#transId geneId source chrom start end strand proteinId geneName transcriptName geneType transcriptType MGP_C3HHeJ_T0011778.1 MGP_C3HHeJ_G0009882.1 mouse_genomes_project 1 5528306 5528706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019541.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52020592 52053472 - MGP_C3HHeJ_P0019541 Inpp1 protein_coding protein_coding MGP_C3HHeJ_T0019542.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52024592 52034413 - MGP_C3HHeJ_P0019542 Inpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019543.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52024980 52029973 - Inpp1 protein_coding retained_intron MGP_C3HHeJ_T0019544.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52029589 52053352 - MGP_C3HHeJ_P0019544 Inpp1 protein_coding protein_coding MGP_C3HHeJ_T0019545.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52031903 52053235 - Inpp1 protein_coding retained_intron MGP_C3HHeJ_T0019546.1 MGP_C3HHeJ_G0015782.1 mouse_genomes_project 1 52031990 52035296 - MGP_C3HHeJ_P0019546 Inpp1 protein_coding protein_coding MGP_C3HHeJ_T0018617.1 MGP_C3HHeJ_G0015602.1 mouse_genomes_project 1 7089846 7097546 - MGP_C3HHeJ_P0018617 Tcf24 protein_coding protein_coding MGP_C3HHeJ_T0018618.1 MGP_C3HHeJ_G0015602.1 mouse_genomes_project 1 7089854 7092492 - MGP_C3HHeJ_P0018618 Tcf24 protein_coding protein_coding MGP_C3HHeJ_T0011786.1 MGP_C3HHeJ_G0009890.1 mouse_genomes_project 1 6565995 6567165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023728.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187225009 187233307 + MGP_C3HHeJ_P0023728 Srp9 protein_coding protein_coding MGP_C3HHeJ_T0023729.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187225022 187233795 + MGP_C3HHeJ_P0023729 Srp9 protein_coding protein_coding MGP_C3HHeJ_T0023730.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187225053 187228764 + Srp9 protein_coding retained_intron MGP_C3HHeJ_T0023731.1 MGP_C3HHeJ_G0016652.1 mouse_genomes_project 1 187231584 187233193 + Srp9 protein_coding retained_intron MGP_C3HHeJ_T0019737.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044910 58060353 - MGP_C3HHeJ_P0019737 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019738.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044910 58060348 - MGP_C3HHeJ_P0019738 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019739.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044913 58060405 - MGP_C3HHeJ_P0019739 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019740.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58044936 58046102 - Ppil3 protein_coding processed_transcript MGP_C3HHeJ_T0019741.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58047703 58060288 - MGP_C3HHeJ_P0019741 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019742.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58048331 58060358 - MGP_C3HHeJ_P0019742 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019743.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58048335 58060401 - MGP_C3HHeJ_P0019743 Ppil3 protein_coding protein_coding MGP_C3HHeJ_T0019744.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58052668 58060095 - Ppil3 protein_coding retained_intron MGP_C3HHeJ_T0019745.1 MGP_C3HHeJ_G0015821.1 mouse_genomes_project 1 58053322 58055459 - Ppil3 protein_coding retained_intron MGP_C3HHeJ_T0000498.1 MGP_C3HHeJ_G0000445.1 mouse_genomes_project 1 80690658 80691825 - TEC TEC MGP_C3HHeJ_T0019006.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647964 32649259 + Ptpn18 protein_coding retained_intron MGP_C3HHeJ_T0019007.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647967 32662709 + MGP_C3HHeJ_P0019007 Ptpn18 protein_coding protein_coding MGP_C3HHeJ_T0019008.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647979 32660890 + MGP_C3HHeJ_P0019008 Ptpn18 protein_coding protein_coding MGP_C3HHeJ_T0019009.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32647994 32660889 + Ptpn18 protein_coding retained_intron MGP_C3HHeJ_T0019010.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32648026 32662571 + MGP_C3HHeJ_P0019010 Ptpn18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019011.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32651473 32655016 + Ptpn18 protein_coding retained_intron MGP_C3HHeJ_T0019012.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32661644 32664658 + MGP_C3HHeJ_P0019012 Ptpn18 protein_coding protein_coding MGP_C3HHeJ_T0019013.1 MGP_C3HHeJ_G0015681.1 mouse_genomes_project 1 32663423 32664658 + Ptpn18 protein_coding processed_transcript MGP_C3HHeJ_T0098656.1 MGP_C3HHeJ_G0036850.1 mouse_genomes_project 1 139894587 139894691 - Gm25609 snRNA snRNA MGP_C3HHeJ_T0018490.1 MGP_C3HHeJ_G0015579.1 mouse_genomes_project 1 1058859 1210055 - MGP_C3HHeJ_P0018490 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0021807.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134795818 134831096 - MGP_C3HHeJ_P0021807 Tmcc2 protein_coding protein_coding MGP_C3HHeJ_T0021808.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134795819 134807390 - Tmcc2 protein_coding retained_intron MGP_C3HHeJ_T0021809.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134795819 134807391 - MGP_C3HHeJ_P0021809 Tmcc2 protein_coding protein_coding MGP_C3HHeJ_T0021810.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134800102 134806576 - Tmcc2 protein_coding processed_transcript MGP_C3HHeJ_T0021811.1 MGP_C3HHeJ_G0016240.1 mouse_genomes_project 1 134800529 134804452 - Tmcc2 protein_coding processed_transcript MGP_C3HHeJ_T0005966.1 MGP_C3HHeJ_G0004986.1 mouse_genomes_project 1 190929610 190943807 + Gm38093 lincRNA lincRNA MGP_C3HHeJ_T0002885.1 MGP_C3HHeJ_G0002713.1 mouse_genomes_project 1 175438160 175445025 - antisense antisense MGP_C3HHeJ_T0002886.1 MGP_C3HHeJ_G0002713.1 mouse_genomes_project 1 175443722 175445025 - antisense antisense MGP_C3HHeJ_T0023154.1 MGP_C3HHeJ_G0016512.1 mouse_genomes_project 1 175143179 175147819 - MGP_C3HHeJ_P0023154 Fcer1g protein_coding protein_coding MGP_C3HHeJ_T0023155.1 MGP_C3HHeJ_G0016512.1 mouse_genomes_project 1 175143187 175147761 - MGP_C3HHeJ_P0023155 Fcer1g protein_coding protein_coding MGP_C3HHeJ_T0023156.1 MGP_C3HHeJ_G0016512.1 mouse_genomes_project 1 175144652 175147793 - Fcer1g protein_coding retained_intron MGP_C3HHeJ_T0011164.1 MGP_C3HHeJ_G0009297.1 mouse_genomes_project 1 177008508 177008835 - Gm22383 misc_RNA misc_RNA MGP_C3HHeJ_T0005964.1 MGP_C3HHeJ_G0004984.1 mouse_genomes_project 1 190533496 190539057 - 4930532G15Rik lincRNA lincRNA MGP_C3HHeJ_T0022139.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138876504 138956535 - MGP_C3HHeJ_P0022139 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022140.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138876633 138890133 - MGP_C3HHeJ_P0022140 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022141.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138877541 138956129 - MGP_C3HHeJ_P0022141 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022142.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138878987 138956129 - MGP_C3HHeJ_P0022142 Camsap2 protein_coding protein_coding MGP_C3HHeJ_T0022143.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138902839 138905732 - Camsap2 protein_coding processed_transcript MGP_C3HHeJ_T0022144.1 MGP_C3HHeJ_G0016309.1 mouse_genomes_project 1 138940760 138956521 - Camsap2 protein_coding processed_transcript MGP_C3HHeJ_T0011693.1 MGP_C3HHeJ_G0009826.1 mouse_genomes_project 1 109289466 109309755 + MGP_C3HHeJ_P0011693 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011694.1 MGP_C3HHeJ_G0009826.1 mouse_genomes_project 1 109289490 109311804 + polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011695.1 MGP_C3HHeJ_G0009826.1 mouse_genomes_project 1 109292834 109309605 + MGP_C3HHeJ_P0011695 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0019427.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44003500 44018340 + Col3a1 protein_coding retained_intron MGP_C3HHeJ_T0019428.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44003500 44047978 + MGP_C3HHeJ_P0019428 Col3a1 protein_coding protein_coding MGP_C3HHeJ_T0019429.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44003609 44008953 + Col3a1 protein_coding processed_transcript MGP_C3HHeJ_T0019430.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44020910 44022216 + Col3a1 protein_coding retained_intron MGP_C3HHeJ_T0019431.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44028907 44032005 + Col3a1 protein_coding retained_intron MGP_C3HHeJ_T0019432.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44030473 44035377 + MGP_C3HHeJ_P0019432 Col3a1 protein_coding protein_coding MGP_C3HHeJ_T0019433.1 MGP_C3HHeJ_G0015763.1 mouse_genomes_project 1 44034658 44046039 + MGP_C3HHeJ_P0019433 Col3a1 protein_coding protein_coding MGP_C3HHeJ_T0101561.1 MGP_C3HHeJ_G0039527.1 mouse_genomes_project 1 89045414 89046258 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023398.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177761004 177769561 + protein_coding processed_transcript MGP_C3HHeJ_T0023399.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177762408 177801887 + MGP_C3HHeJ_P0023399 protein_coding protein_coding MGP_C3HHeJ_T0023400.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177795125 177808688 + MGP_C3HHeJ_P0023400 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023401.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177797150 177797775 + MGP_C3HHeJ_P0023401 protein_coding protein_coding MGP_C3HHeJ_T0023402.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177797533 177804220 + protein_coding processed_transcript MGP_C3HHeJ_T0023403.1 MGP_C3HHeJ_G0016571.1 mouse_genomes_project 1 177797667 177798345 + protein_coding processed_transcript MGP_C3HHeJ_T0019946.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002837 63004203 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019947.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002837 63036196 - MGP_C3HHeJ_P0019947 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019948.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002845 63006965 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019949.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002930 63006633 - MGP_C3HHeJ_P0019949 Ndufs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019950.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63002976 63036106 - MGP_C3HHeJ_P0019950 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019951.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63009306 63036037 - MGP_C3HHeJ_P0019951 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019952.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63009476 63012064 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019953.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63015904 63036043 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019954.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63018491 63036041 - Ndufs1 protein_coding retained_intron MGP_C3HHeJ_T0019955.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63023415 63036064 - MGP_C3HHeJ_P0019955 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019956.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63024589 63036040 - MGP_C3HHeJ_P0019956 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019957.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63028666 63036167 - MGP_C3HHeJ_P0019957 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0019958.1 MGP_C3HHeJ_G0015855.1 mouse_genomes_project 1 63030259 63036207 - MGP_C3HHeJ_P0019958 Ndufs1 protein_coding protein_coding MGP_C3HHeJ_T0021701.1 MGP_C3HHeJ_G0016217.1 mouse_genomes_project 1 133441561 133486577 - MGP_C3HHeJ_P0021701 Mapkapk2 protein_coding protein_coding MGP_C3HHeJ_T0021702.1 MGP_C3HHeJ_G0016217.1 mouse_genomes_project 1 133444750 133460531 - MGP_C3HHeJ_P0021702 Mapkapk2 protein_coding protein_coding MGP_C3HHeJ_T0009444.1 MGP_C3HHeJ_G0007577.1 mouse_genomes_project 1 135381937 135382058 - Gm44300 miRNA miRNA MGP_C3HHeJ_T0000578.1 MGP_C3HHeJ_G0000525.1 mouse_genomes_project 1 128545198 128546213 - TEC TEC MGP_C3HHeJ_T0012131.1 MGP_C3HHeJ_G0010235.1 mouse_genomes_project 1 126821840 126822246 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009471.1 MGP_C3HHeJ_G0007604.1 mouse_genomes_project 1 185566041 185566108 + Mir6904 miRNA miRNA MGP_C3HHeJ_T0018883.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635414 21709188 - MGP_C3HHeJ_P0018883 Fam135a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018884.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635414 21652539 - MGP_C3HHeJ_P0018884 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018885.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635566 21726145 - MGP_C3HHeJ_P0018885 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018886.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635912 21726133 - MGP_C3HHeJ_P0018886 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018887.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21635925 21654866 - MGP_C3HHeJ_P0018887 Fam135a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018888.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21636002 21726284 - MGP_C3HHeJ_P0018888 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018889.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21649339 21654230 - MGP_C3HHeJ_P0018889 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018890.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21654501 21726167 - MGP_C3HHeJ_P0018890 Fam135a protein_coding protein_coding MGP_C3HHeJ_T0018891.1 MGP_C3HHeJ_G0015659.1 mouse_genomes_project 1 21678417 21726292 - Fam135a protein_coding retained_intron MGP_C3HHeJ_T0012058.1 MGP_C3HHeJ_G0010162.1 mouse_genomes_project 1 100137135 100137849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021141.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071208 94081257 + MGP_C3HHeJ_P0021141 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021142.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071250 94080988 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021143.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071278 94073834 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021144.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071546 94077153 + MGP_C3HHeJ_P0021144 Rnpepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021145.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94071634 94076349 + MGP_C3HHeJ_P0021145 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021146.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94076259 94080988 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021147.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077206 94080988 + MGP_C3HHeJ_P0021147 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021148.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077220 94079632 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021149.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077427 94078489 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021150.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077562 94079481 + MGP_C3HHeJ_P0021150 Rnpepl1 protein_coding protein_coding MGP_C3HHeJ_T0021151.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94077831 94079633 + Rnpepl1 protein_coding retained_intron MGP_C3HHeJ_T0021152.1 MGP_C3HHeJ_G0016095.1 mouse_genomes_project 1 94080029 94084799 + MGP_C3HHeJ_P0021152 Rnpepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002718.1 MGP_C3HHeJ_G0002587.1 mouse_genomes_project 1 36295230 36315126 + Gm15457 antisense antisense MGP_C3HHeJ_T0018753.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13579963 13899067 - MGP_C3HHeJ_P0018753 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018754.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580090 13898989 - MGP_C3HHeJ_P0018754 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018755.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580093 13898989 - MGP_C3HHeJ_P0018755 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018756.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580099 13899067 - MGP_C3HHeJ_P0018756 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018757.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13580105 13899799 - MGP_C3HHeJ_P0018757 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018758.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13714487 13898955 - MGP_C3HHeJ_P0018758 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018759.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13714566 13899008 - MGP_C3HHeJ_P0018759 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018760.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13714651 13899754 - MGP_C3HHeJ_P0018760 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018761.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13715276 13747037 - Stau2 protein_coding processed_transcript MGP_C3HHeJ_T0018762.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13715369 13899001 - MGP_C3HHeJ_P0018762 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018763.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13715377 13899014 - MGP_C3HHeJ_P0018763 Stau2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018764.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13716672 13899068 - MGP_C3HHeJ_P0018764 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018765.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13763037 13899031 - MGP_C3HHeJ_P0018765 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018766.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13818956 13899767 - MGP_C3HHeJ_P0018766 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018767.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13833725 13899021 - MGP_C3HHeJ_P0018767 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018768.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13834114 13899708 - MGP_C3HHeJ_P0018768 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0018769.1 MGP_C3HHeJ_G0015626.1 mouse_genomes_project 1 13834223 13899707 - MGP_C3HHeJ_P0018769 Stau2 protein_coding protein_coding MGP_C3HHeJ_T0005833.1 MGP_C3HHeJ_G0004883.1 mouse_genomes_project 1 136470370 136482592 + Gm1627 lincRNA lincRNA MGP_C3HHeJ_T0019934.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62539846 62578314 + Nrp2 protein_coding retained_intron MGP_C3HHeJ_T0019935.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62539846 62660116 + MGP_C3HHeJ_P0019935 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019936.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62539846 62660116 + MGP_C3HHeJ_P0019936 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019937.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62660116 + MGP_C3HHeJ_P0019937 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019938.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62636470 + MGP_C3HHeJ_P0019938 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019939.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62638793 + MGP_C3HHeJ_P0019939 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0019940.1 MGP_C3HHeJ_G0015853.1 mouse_genomes_project 1 62540263 62660116 + MGP_C3HHeJ_P0019940 Nrp2 protein_coding protein_coding MGP_C3HHeJ_T0012266.1 MGP_C3HHeJ_G0010370.1 mouse_genomes_project 1 196371554 196371981 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023414.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178301050 178312993 - protein_coding processed_transcript MGP_C3HHeJ_T0023415.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178304657 178312196 - MGP_C3HHeJ_P0023415 protein_coding protein_coding MGP_C3HHeJ_T0023416.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178304824 178312288 - protein_coding processed_transcript MGP_C3HHeJ_T0023418.1 MGP_C3HHeJ_G0016578.1 mouse_genomes_project 1 178307268 178312309 - protein_coding retained_intron MGP_C3HHeJ_T0009376.1 MGP_C3HHeJ_G0007509.1 mouse_genomes_project 1 5663902 5664012 - Gm23358 miRNA miRNA MGP_C3HHeJ_T0011926.1 MGP_C3HHeJ_G0010030.1 mouse_genomes_project 1 48710453 48710890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005718.1 MGP_C3HHeJ_G0004787.1 mouse_genomes_project 1 74032010 74133142 - Gm29183 lincRNA lincRNA MGP_C3HHeJ_T0000380.1 MGP_C3HHeJ_G0000328.1 mouse_genomes_project 1 23046356 23049611 - TEC TEC MGP_C3HHeJ_T0020173.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72486263 72511662 - MGP_C3HHeJ_P0020173 Pecr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020174.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72486268 72511716 - MGP_C3HHeJ_P0020174 Pecr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020175.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72486268 72511717 - MGP_C3HHeJ_P0020175 Pecr protein_coding protein_coding MGP_C3HHeJ_T0020176.1 MGP_C3HHeJ_G0015898.1 mouse_genomes_project 1 72494065 72511662 - MGP_C3HHeJ_P0020176 Pecr protein_coding protein_coding MGP_C3HHeJ_T0012216.1 MGP_C3HHeJ_G0010320.1 mouse_genomes_project 1 169305389 169306221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101572.1 MGP_C3HHeJ_G0039538.1 mouse_genomes_project 1 103977058 104063262 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024017.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197481497 197521235 - MGP_C3HHeJ_P0024017 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024018.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197481512 197521265 - MGP_C3HHeJ_P0024018 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024019.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197481722 197521256 - MGP_C3HHeJ_P0024019 Rcor3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024020.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483535 197499266 - MGP_C3HHeJ_P0024020 Rcor3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024021.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483738 197521287 - MGP_C3HHeJ_P0024021 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024022.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483762 197521057 - MGP_C3HHeJ_P0024022 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024023.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197483858 197506931 - MGP_C3HHeJ_P0024023 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024024.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197484339 197521152 - MGP_C3HHeJ_P0024024 Rcor3 protein_coding protein_coding MGP_C3HHeJ_T0024025.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197489137 197491803 - Rcor3 protein_coding retained_intron MGP_C3HHeJ_T0024026.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197511170 197514582 - Rcor3 protein_coding retained_intron MGP_C3HHeJ_T0024027.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197517522 197521260 - Rcor3 protein_coding retained_intron MGP_C3HHeJ_T0024028.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197519721 197521235 - Rcor3 protein_coding processed_transcript MGP_C3HHeJ_T0024029.1 MGP_C3HHeJ_G0016713.1 mouse_genomes_project 1 197520012 197521249 - Rcor3 protein_coding processed_transcript MGP_C3HHeJ_T0005746.1 MGP_C3HHeJ_G0004810.1 mouse_genomes_project 1 89432193 89439083 + Gm28888 lincRNA lincRNA MGP_C3HHeJ_T0022494.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158546766 158548277 - BC034090 protein_coding retained_intron MGP_C3HHeJ_T0022495.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158547815 158579134 - MGP_C3HHeJ_P0022495 BC034090 protein_coding protein_coding MGP_C3HHeJ_T0022496.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158551816 158560132 - BC034090 protein_coding processed_transcript MGP_C3HHeJ_T0022497.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158552566 158559881 - BC034090 protein_coding processed_transcript MGP_C3HHeJ_T0022498.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158560396 158564601 - BC034090 protein_coding processed_transcript MGP_C3HHeJ_T0022499.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158560746 158567618 - MGP_C3HHeJ_P0022499 BC034090 protein_coding protein_coding MGP_C3HHeJ_T0022500.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158560830 158575811 - BC034090 protein_coding retained_intron MGP_C3HHeJ_T0022501.1 MGP_C3HHeJ_G0016378.1 mouse_genomes_project 1 158563820 158566611 - BC034090 protein_coding retained_intron MGP_C3HHeJ_T0023258.1 MGP_C3HHeJ_G0016532.1 mouse_genomes_project 1 175912791 175926832 - MGP_C3HHeJ_P0023258 Slamf7 protein_coding protein_coding MGP_C3HHeJ_T0023259.1 MGP_C3HHeJ_G0016532.1 mouse_genomes_project 1 175913585 175926912 - MGP_C3HHeJ_P0023259 Slamf7 protein_coding protein_coding MGP_C3HHeJ_T0023260.1 MGP_C3HHeJ_G0016532.1 mouse_genomes_project 1 175914098 175926832 - MGP_C3HHeJ_P0023260 Slamf7 protein_coding protein_coding MGP_C3HHeJ_T0023115.1 MGP_C3HHeJ_G0016504.1 mouse_genomes_project 1 174939449 174949392 - Fcgr3 protein_coding retained_intron MGP_C3HHeJ_T0023116.1 MGP_C3HHeJ_G0016504.1 mouse_genomes_project 1 174941804 174950753 - MGP_C3HHeJ_P0023116 Fcgr3 protein_coding protein_coding MGP_C3HHeJ_T0023117.1 MGP_C3HHeJ_G0016504.1 mouse_genomes_project 1 174941824 174950753 - MGP_C3HHeJ_P0023117 Fcgr3 protein_coding protein_coding MGP_C3HHeJ_T0000384.1 MGP_C3HHeJ_G0000332.1 mouse_genomes_project 1 23365109 23370561 - TEC TEC MGP_C3HHeJ_T0023379.1 MGP_C3HHeJ_G0016561.1 mouse_genomes_project 1 177227084 177228165 - MGP_C3HHeJ_P0023379 Apcs protein_coding protein_coding MGP_C3HHeJ_T0012256.1 MGP_C3HHeJ_G0010360.1 mouse_genomes_project 1 188751617 188752083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011970.1 MGP_C3HHeJ_G0010074.1 mouse_genomes_project 1 60903546 60904098 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000676.1 MGP_C3HHeJ_G0000621.1 mouse_genomes_project 1 162808441 162808853 - TEC TEC MGP_C3HHeJ_T0098617.1 MGP_C3HHeJ_G0036811.1 mouse_genomes_project 1 58082809 58082916 - Gm23966 snRNA snRNA MGP_C3HHeJ_T0000433.1 MGP_C3HHeJ_G0000380.1 mouse_genomes_project 1 44190013 44197220 - TEC TEC MGP_C3HHeJ_T0099847.1 MGP_C3HHeJ_G0038041.1 mouse_genomes_project 1 57758800 57758908 - Gm24548 snoRNA snoRNA MGP_C3HHeJ_T0099894.1 MGP_C3HHeJ_G0038088.1 mouse_genomes_project 1 157383749 157383854 - Gm25336 snoRNA snoRNA MGP_C3HHeJ_T0000503.1 MGP_C3HHeJ_G0000450.1 mouse_genomes_project 1 81215584 81217524 - TEC TEC MGP_C3HHeJ_T0012164.1 MGP_C3HHeJ_G0010268.1 mouse_genomes_project 1 147150425 147152096 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000323.1 MGP_C3HHeJ_G0000273.1 mouse_genomes_project 1 505444 507753 - TEC TEC MGP_C3HHeJ_T0012004.1 MGP_C3HHeJ_G0010108.1 mouse_genomes_project 1 71921709 71922060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011875.1 MGP_C3HHeJ_G0009979.1 mouse_genomes_project 1 32859449 32860095 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012194.1 MGP_C3HHeJ_G0010298.1 mouse_genomes_project 1 158512462 158513044 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011925.1 MGP_C3HHeJ_G0010029.1 mouse_genomes_project 1 48623844 48624284 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020762.1 MGP_C3HHeJ_G0016006.1 mouse_genomes_project 1 86735073 86747336 + MGP_C3HHeJ_P0020762 2810459M11Rik protein_coding protein_coding MGP_C3HHeJ_T0020763.1 MGP_C3HHeJ_G0016006.1 mouse_genomes_project 1 86735073 86745230 + MGP_C3HHeJ_P0020763 2810459M11Rik protein_coding protein_coding MGP_C3HHeJ_T0099868.1 MGP_C3HHeJ_G0038062.1 mouse_genomes_project 1 98063962 98064090 + Gm26078 snoRNA snoRNA MGP_C3HHeJ_T0011997.1 MGP_C3HHeJ_G0010101.1 mouse_genomes_project 1 67653903 67655887 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005600.1 MGP_C3HHeJ_G0004706.1 mouse_genomes_project 1 32610528 32616785 - Gm37233 lincRNA lincRNA MGP_C3HHeJ_T0021915.1 MGP_C3HHeJ_G0016260.1 mouse_genomes_project 1 136145586 136150593 - MGP_C3HHeJ_P0021915 Zbed6 protein_coding protein_coding MGP_C3HHeJ_T0011168.1 MGP_C3HHeJ_G0009301.1 mouse_genomes_project 1 196581913 196582021 + Gm24748 misc_RNA misc_RNA MGP_C3HHeJ_T0021741.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093450 134121095 + MGP_C3HHeJ_P0021741 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021742.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093462 134118410 + MGP_C3HHeJ_P0021742 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021743.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093493 134117322 + MGP_C3HHeJ_P0021743 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021744.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134093521 134117489 + MGP_C3HHeJ_P0021744 Rab7b protein_coding protein_coding MGP_C3HHeJ_T0021745.1 MGP_C3HHeJ_G0016226.1 mouse_genomes_project 1 134102503 134111694 + Rab7b protein_coding processed_transcript MGP_C3HHeJ_T0011888.1 MGP_C3HHeJ_G0009992.1 mouse_genomes_project 1 37730691 37731246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005720.1 MGP_C3HHeJ_G0004789.1 mouse_genomes_project 1 76740527 76847488 + Gm29069 lincRNA lincRNA MGP_C3HHeJ_T0101100.1 MGP_C3HHeJ_G0039283.1 mouse_genomes_project 1 187661093 187662027 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101101.1 MGP_C3HHeJ_G0039283.1 mouse_genomes_project 1 187661515 187676826 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0012192.1 MGP_C3HHeJ_G0010296.1 mouse_genomes_project 1 158356973 158357184 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098648.1 MGP_C3HHeJ_G0036842.1 mouse_genomes_project 1 131149409 131149520 - Gm23056 snRNA snRNA MGP_C3HHeJ_T0012186.1 MGP_C3HHeJ_G0010290.1 mouse_genomes_project 1 155321530 155322335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101082.1 MGP_C3HHeJ_G0039275.1 mouse_genomes_project 1 44749415 44759749 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101083.1 MGP_C3HHeJ_G0039275.1 mouse_genomes_project 1 44749758 44759717 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101084.1 MGP_C3HHeJ_G0039275.1 mouse_genomes_project 1 44758910 44759526 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0098310.1 MGP_C3HHeJ_G0036522.1 mouse_genomes_project 1 36450166 36451177 - Gm37062 sense_intronic sense_intronic MGP_C3HHeJ_T0005797.1 MGP_C3HHeJ_G0004854.1 mouse_genomes_project 1 120342214 120349206 + Gm28867 lincRNA lincRNA MGP_C3HHeJ_T0011856.1 MGP_C3HHeJ_G0009960.1 mouse_genomes_project 1 29328891 29329533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101559.1 MGP_C3HHeJ_G0039525.1 mouse_genomes_project 1 88928072 88928821 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021750.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134202556 134227351 + MGP_C3HHeJ_P0021750 Pm20d1 protein_coding protein_coding MGP_C3HHeJ_T0021751.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134202573 134227363 + MGP_C3HHeJ_P0021751 Pm20d1 protein_coding protein_coding MGP_C3HHeJ_T0021752.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134217306 134221542 + MGP_C3HHeJ_P0021752 Pm20d1 protein_coding protein_coding MGP_C3HHeJ_T0021753.1 MGP_C3HHeJ_G0016228.1 mouse_genomes_project 1 134217344 134217582 + Pm20d1 protein_coding processed_transcript MGP_C3HHeJ_T0101607.1 MGP_C3HHeJ_G0039573.1 mouse_genomes_project 1 186037238 186037349 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002926.1 MGP_C3HHeJ_G0002748.1 mouse_genomes_project 1 197245099 197246723 - Gm38037 antisense antisense MGP_C3HHeJ_T0022532.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159353889 159386404 - MGP_C3HHeJ_P0022532 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022533.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159353904 159388008 - MGP_C3HHeJ_P0022533 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022534.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159355952 159388061 - MGP_C3HHeJ_P0022534 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022535.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159356702 159384539 - MGP_C3HHeJ_P0022535 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022536.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159356743 159386467 - MGP_C3HHeJ_P0022536 Tor1aip1 protein_coding protein_coding MGP_C3HHeJ_T0022537.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159356743 159388061 - MGP_C3HHeJ_P0022537 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022538.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159367112 159368387 - Tor1aip1 protein_coding retained_intron MGP_C3HHeJ_T0022539.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159367997 159387816 - MGP_C3HHeJ_P0022539 Tor1aip1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022540.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159372982 159387631 - MGP_C3HHeJ_P0022540 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022541.1 MGP_C3HHeJ_G0016384.1 mouse_genomes_project 1 159381806 159387728 - Tor1aip1 protein_coding retained_intron MGP_C3HHeJ_T0098635.1 MGP_C3HHeJ_G0036829.1 mouse_genomes_project 1 94537299 94537402 + Gm26446 snRNA snRNA MGP_C3HHeJ_T0023276.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176298530 176325862 - MGP_C3HHeJ_P0023276 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023277.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176298530 176324710 - MGP_C3HHeJ_P0023277 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023278.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176301872 176324710 - MGP_C3HHeJ_P0023278 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023279.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176302214 176306469 - Vangl2 protein_coding processed_transcript MGP_C3HHeJ_T0023280.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176307294 176324124 - MGP_C3HHeJ_P0023280 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0023281.1 MGP_C3HHeJ_G0016538.1 mouse_genomes_project 1 176307377 176324683 - MGP_C3HHeJ_P0023281 Vangl2 protein_coding protein_coding MGP_C3HHeJ_T0101605.1 MGP_C3HHeJ_G0039571.1 mouse_genomes_project 1 182756815 182765922 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023583.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184916684 185123812 + MGP_C3HHeJ_P0023583 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023584.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184916797 185126259 + MGP_C3HHeJ_P0023584 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023585.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184916972 185070273 + MGP_C3HHeJ_P0023585 Cdc42bpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023586.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184917322 185122822 + MGP_C3HHeJ_P0023586 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023587.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184917322 185122822 + MGP_C3HHeJ_P0023587 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023588.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184931825 184998890 + Cdc42bpa protein_coding processed_transcript MGP_C3HHeJ_T0023589.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 184947582 184995635 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023590.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185042864 185053228 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023591.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185059525 185123244 + MGP_C3HHeJ_P0023591 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023592.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185065398 185077339 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023593.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185067373 185070548 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023594.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185067573 185126258 + MGP_C3HHeJ_P0023594 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023595.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185067646 185109893 + MGP_C3HHeJ_P0023595 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023596.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185069720 185097460 + MGP_C3HHeJ_P0023596 Cdc42bpa protein_coding protein_coding MGP_C3HHeJ_T0023597.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185069738 185074689 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0023598.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185081972 185099288 + Cdc42bpa protein_coding processed_transcript MGP_C3HHeJ_T0023599.1 MGP_C3HHeJ_G0016627.1 mouse_genomes_project 1 185121662 185122950 + Cdc42bpa protein_coding retained_intron MGP_C3HHeJ_T0019802.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58839400 58857739 - MGP_C3HHeJ_P0019802 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019803.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58839407 58857451 - MGP_C3HHeJ_P0019803 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019804.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58839721 58858022 - MGP_C3HHeJ_P0019804 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019805.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58846034 58857752 - MGP_C3HHeJ_P0019805 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019806.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58846623 58851955 - Tmem237 protein_coding retained_intron MGP_C3HHeJ_T0019807.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58846929 58858048 - MGP_C3HHeJ_P0019807 Tmem237 protein_coding protein_coding MGP_C3HHeJ_T0019808.1 MGP_C3HHeJ_G0015832.1 mouse_genomes_project 1 58847710 58853597 - Tmem237 protein_coding retained_intron MGP_C3HHeJ_T0020139.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919570 71086241 + MGP_C3HHeJ_P0020139 Vwc2l protein_coding protein_coding MGP_C3HHeJ_T0020140.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919607 70926058 + Vwc2l protein_coding retained_intron MGP_C3HHeJ_T0020141.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919757 71086226 + MGP_C3HHeJ_P0020141 Vwc2l protein_coding protein_coding MGP_C3HHeJ_T0020142.1 MGP_C3HHeJ_G0015892.1 mouse_genomes_project 1 70919778 71083333 + MGP_C3HHeJ_P0020142 Vwc2l protein_coding protein_coding MGP_C3HHeJ_T0022899.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168084181 168105497 - MGP_C3HHeJ_P0022899 Atp1b1 protein_coding protein_coding MGP_C3HHeJ_T0022900.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168088531 168090792 - Atp1b1 protein_coding processed_transcript MGP_C3HHeJ_T0022901.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168088531 168100924 - MGP_C3HHeJ_P0022901 Atp1b1 protein_coding protein_coding MGP_C3HHeJ_T0022902.1 MGP_C3HHeJ_G0016451.1 mouse_genomes_project 1 168100408 168105164 - Atp1b1 protein_coding retained_intron MGP_C3HHeJ_T0011829.1 MGP_C3HHeJ_G0009933.1 mouse_genomes_project 1 20304423 20305225 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000375.1 MGP_C3HHeJ_G0000323.1 mouse_genomes_project 1 22965170 22966201 - TEC TEC MGP_C3HHeJ_T0005904.1 MGP_C3HHeJ_G0004938.1 mouse_genomes_project 1 168733224 168737315 - 4930568G15Rik lincRNA lincRNA MGP_C3HHeJ_T0005905.1 MGP_C3HHeJ_G0004938.1 mouse_genomes_project 1 168735817 168761909 - 4930568G15Rik lincRNA lincRNA MGP_C3HHeJ_T0023007.1 MGP_C3HHeJ_G0016472.1 mouse_genomes_project 1 170201273 170217620 - MGP_C3HHeJ_P0023007 Gm4846 protein_coding protein_coding MGP_C3HHeJ_T0019562.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52425319 52547674 - MGP_C3HHeJ_P0019562 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019563.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52433058 52547673 - MGP_C3HHeJ_P0019563 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019564.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52503624 52547631 - MGP_C3HHeJ_P0019564 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019565.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52521225 52529080 - MGP_C3HHeJ_P0019565 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019566.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52521247 52547671 - MGP_C3HHeJ_P0019566 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019567.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52528618 52547671 - MGP_C3HHeJ_P0019567 Pms1 protein_coding protein_coding MGP_C3HHeJ_T0019568.1 MGP_C3HHeJ_G0015787.1 mouse_genomes_project 1 52545948 52547671 - Pms1 protein_coding retained_intron MGP_C3HHeJ_T0021863.1 MGP_C3HHeJ_G0016249.1 mouse_genomes_project 1 135600483 135609122 + MGP_C3HHeJ_P0021863 Ppp1r15b protein_coding protein_coding MGP_C3HHeJ_T0021864.1 MGP_C3HHeJ_G0016249.1 mouse_genomes_project 1 135600683 135609122 + Ppp1r15b protein_coding processed_transcript MGP_C3HHeJ_T0012067.1 MGP_C3HHeJ_G0010171.1 mouse_genomes_project 1 102858727 102859432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011964.1 MGP_C3HHeJ_G0010068.1 mouse_genomes_project 1 60520319 60521385 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012066.1 MGP_C3HHeJ_G0010170.1 mouse_genomes_project 1 102846989 102847438 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000652.1 MGP_C3HHeJ_G0000597.1 mouse_genomes_project 1 155489693 155490042 - TEC TEC MGP_C3HHeJ_T0000541.1 MGP_C3HHeJ_G0000488.1 mouse_genomes_project 1 96903984 96905719 - TEC TEC MGP_C3HHeJ_T0011820.1 MGP_C3HHeJ_G0009924.1 mouse_genomes_project 1 17907278 17908618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098612.1 MGP_C3HHeJ_G0036806.1 mouse_genomes_project 1 44419747 44419854 - Gm23216 snRNA snRNA MGP_C3HHeJ_T0000629.1 MGP_C3HHeJ_G0000574.1 mouse_genomes_project 1 141690901 141694289 - TEC TEC MGP_C3HHeJ_T0000762.1 MGP_C3HHeJ_G0000705.1 mouse_genomes_project 1 195227892 195231366 - TEC TEC MGP_C3HHeJ_T0012212.1 MGP_C3HHeJ_G0010316.1 mouse_genomes_project 1 167341087 167342129 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000543.1 MGP_C3HHeJ_G0000490.1 mouse_genomes_project 1 97612375 97614669 + TEC TEC MGP_C3HHeJ_T0020771.1 MGP_C3HHeJ_G0016008.1 mouse_genomes_project 1 86793294 86806238 - MGP_C3HHeJ_P0020771 Htr2b protein_coding protein_coding MGP_C3HHeJ_T0020772.1 MGP_C3HHeJ_G0016008.1 mouse_genomes_project 1 86794369 86804940 - MGP_C3HHeJ_P0020772 Htr2b protein_coding protein_coding MGP_C3HHeJ_T0023198.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202643 175209644 - MGP_C3HHeJ_P0023198 Ufc1 protein_coding protein_coding MGP_C3HHeJ_T0023199.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202645 175204499 - Ufc1 protein_coding retained_intron MGP_C3HHeJ_T0023200.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202774 175209561 - MGP_C3HHeJ_P0023200 Ufc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023201.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202792 175209607 - MGP_C3HHeJ_P0023201 Ufc1 protein_coding protein_coding MGP_C3HHeJ_T0023202.1 MGP_C3HHeJ_G0016518.1 mouse_genomes_project 1 175202857 175209560 - Ufc1 protein_coding retained_intron MGP_C3HHeJ_T0000331.1 MGP_C3HHeJ_G0000281.1 mouse_genomes_project 1 2017791 2019906 - TEC TEC MGP_C3HHeJ_T0000692.1 MGP_C3HHeJ_G0000637.1 mouse_genomes_project 1 165294092 165295215 + TEC TEC MGP_C3HHeJ_T0005923.1 MGP_C3HHeJ_G0004955.1 mouse_genomes_project 1 181061319 181166778 - lincRNA lincRNA MGP_C3HHeJ_T0023526.1 MGP_C3HHeJ_G0016612.1 mouse_genomes_project 1 182425334 182462519 - MGP_C3HHeJ_P0023526 Adss protein_coding protein_coding MGP_C3HHeJ_T0023527.1 MGP_C3HHeJ_G0016612.1 mouse_genomes_project 1 182425548 182430974 - Adss protein_coding retained_intron MGP_C3HHeJ_T0023528.1 MGP_C3HHeJ_G0016612.1 mouse_genomes_project 1 182436990 182462509 - Adss protein_coding retained_intron MGP_C3HHeJ_T0021286.1 MGP_C3HHeJ_G0016124.1 mouse_genomes_project 1 98424507 98501268 - MGP_C3HHeJ_P0021286 Slco6c1 protein_coding protein_coding MGP_C3HHeJ_T0021287.1 MGP_C3HHeJ_G0016124.1 mouse_genomes_project 1 98425095 98501363 - MGP_C3HHeJ_P0021287 Slco6c1 protein_coding protein_coding MGP_C3HHeJ_T0097958.1 MGP_C3HHeJ_G0036170.1 mouse_genomes_project 1 83164426 83164524 + n-R5s213 rRNA rRNA MGP_C3HHeJ_T0021011.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014249 92022769 - MGP_C3HHeJ_P0021011 Rab17 protein_coding protein_coding MGP_C3HHeJ_T0021012.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014251 92020770 - MGP_C3HHeJ_P0021012 Rab17 protein_coding protein_coding MGP_C3HHeJ_T0021013.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014847 92022656 - Rab17 protein_coding processed_transcript MGP_C3HHeJ_T0021014.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92014970 92020720 - Rab17 protein_coding processed_transcript MGP_C3HHeJ_T0021015.1 MGP_C3HHeJ_G0016065.1 mouse_genomes_project 1 92016111 92022752 - MGP_C3HHeJ_P0021015 Rab17 protein_coding protein_coding MGP_C3HHeJ_T0012175.1 MGP_C3HHeJ_G0010279.1 mouse_genomes_project 1 152013970 152014195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099869.1 MGP_C3HHeJ_G0038063.1 mouse_genomes_project 1 101712087 101712219 - Gm23602 snoRNA snoRNA MGP_C3HHeJ_T0005641.1 MGP_C3HHeJ_G0004730.1 mouse_genomes_project 1 42399619 42400231 + Gm29157 lincRNA lincRNA MGP_C3HHeJ_T0101540.1 MGP_C3HHeJ_G0039506.1 mouse_genomes_project 1 15415705 15426997 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024113.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544248 200571209 - Cd46 protein_coding retained_intron MGP_C3HHeJ_T0024114.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544313 200596216 - MGP_C3HHeJ_P0024114 Cd46 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024115.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544336 200586171 - Cd46 protein_coding retained_intron MGP_C3HHeJ_T0024116.1 MGP_C3HHeJ_G0016728.1 mouse_genomes_project 1 200544405 200596216 - MGP_C3HHeJ_P0024116 Cd46 protein_coding protein_coding MGP_C3HHeJ_T0022294.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447716 153462177 + MGP_C3HHeJ_P0022294 Pdc protein_coding protein_coding MGP_C3HHeJ_T0022295.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447716 153462176 + MGP_C3HHeJ_P0022295 Pdc protein_coding protein_coding MGP_C3HHeJ_T0022296.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447725 153461589 + MGP_C3HHeJ_P0022296 Pdc protein_coding protein_coding MGP_C3HHeJ_T0022297.1 MGP_C3HHeJ_G0016341.1 mouse_genomes_project 1 153447728 153462174 + MGP_C3HHeJ_P0022297 Pdc protein_coding protein_coding MGP_C3HHeJ_T0005730.1 MGP_C3HHeJ_G0004798.1 mouse_genomes_project 1 80616089 80623349 + 9830004L10Rik lincRNA lincRNA MGP_C3HHeJ_T0005731.1 MGP_C3HHeJ_G0004798.1 mouse_genomes_project 1 80618270 80623349 + 9830004L10Rik lincRNA lincRNA MGP_C3HHeJ_T0005732.1 MGP_C3HHeJ_G0004798.1 mouse_genomes_project 1 80618292 80623394 + 9830004L10Rik lincRNA lincRNA MGP_C3HHeJ_T0000430.1 MGP_C3HHeJ_G0000377.1 mouse_genomes_project 1 42127160 42129651 + TEC TEC MGP_C3HHeJ_T0101089.1 MGP_C3HHeJ_G0039278.1 mouse_genomes_project 1 139446930 139447269 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011805.1 MGP_C3HHeJ_G0009909.1 mouse_genomes_project 1 13397516 13398069 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098602.1 MGP_C3HHeJ_G0036796.1 mouse_genomes_project 1 22958496 22958603 - Gm22260 snRNA snRNA MGP_C3HHeJ_T0018625.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7159295 7172814 - MGP_C3HHeJ_P0018625 Cops5 protein_coding protein_coding MGP_C3HHeJ_T0018626.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7159537 7169816 - MGP_C3HHeJ_P0018626 Cops5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018627.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7161892 7172628 - MGP_C3HHeJ_P0018627 Cops5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018628.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7165373 7172836 - MGP_C3HHeJ_P0018628 Cops5 protein_coding protein_coding MGP_C3HHeJ_T0018629.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7165601 7172625 - Cops5 protein_coding retained_intron MGP_C3HHeJ_T0018630.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7167726 7172855 - Cops5 protein_coding retained_intron MGP_C3HHeJ_T0018631.1 MGP_C3HHeJ_G0015604.1 mouse_genomes_project 1 7171966 7172632 - Cops5 protein_coding retained_intron MGP_C3HHeJ_T0012183.1 MGP_C3HHeJ_G0010287.1 mouse_genomes_project 1 154294610 154296770 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002704.1 MGP_C3HHeJ_G0002575.1 mouse_genomes_project 1 18556400 18558025 + Gm28287 antisense antisense MGP_C3HHeJ_T0002789.1 MGP_C3HHeJ_G0002641.1 mouse_genomes_project 1 93980061 93997008 - Gm29481 antisense antisense MGP_C3HHeJ_T0002742.1 MGP_C3HHeJ_G0002606.1 mouse_genomes_project 1 57507743 57515012 - Gm17234 antisense antisense MGP_C3HHeJ_T0012037.1 MGP_C3HHeJ_G0010141.1 mouse_genomes_project 1 87923007 87924809 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002739.1 MGP_C3HHeJ_G0002604.1 mouse_genomes_project 1 54150439 54207910 + 4930444A19Rik antisense antisense MGP_C3HHeJ_T0002740.1 MGP_C3HHeJ_G0002604.1 mouse_genomes_project 1 54159175 54238605 + 4930444A19Rik antisense antisense MGP_C3HHeJ_T0018735.1 MGP_C3HHeJ_G0015619.1 mouse_genomes_project 1 12178418 12224430 - MGP_C3HHeJ_P0018735 Trpa1 protein_coding protein_coding MGP_C3HHeJ_T0000660.1 MGP_C3HHeJ_G0000605.1 mouse_genomes_project 1 159323599 159324808 + TEC TEC MGP_C3HHeJ_T0011749.1 MGP_C3HHeJ_G0009853.1 mouse_genomes_project 1 574218 575144 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012023.1 MGP_C3HHeJ_G0010127.1 mouse_genomes_project 1 83313219 83313402 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023976.1 MGP_C3HHeJ_G0016704.1 mouse_genomes_project 1 196718415 196743736 + MGP_C3HHeJ_P0023976 Tmem206 protein_coding protein_coding MGP_C3HHeJ_T0002732.1 MGP_C3HHeJ_G0002598.1 mouse_genomes_project 1 41714177 41715425 + 8430432A02Rik antisense antisense MGP_C3HHeJ_T0023142.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175128062 175134569 - MGP_C3HHeJ_P0023142 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023143.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175129854 175134503 - MGP_C3HHeJ_P0023143 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023144.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175129854 175134239 - MGP_C3HHeJ_P0023144 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023145.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175130415 175134506 - MGP_C3HHeJ_P0023145 Tomm40l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023146.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175132880 175134515 - MGP_C3HHeJ_P0023146 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023147.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175132951 175134499 - MGP_C3HHeJ_P0023147 Tomm40l protein_coding protein_coding MGP_C3HHeJ_T0023148.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175133140 175134487 - Tomm40l protein_coding processed_transcript MGP_C3HHeJ_T0023149.1 MGP_C3HHeJ_G0016510.1 mouse_genomes_project 1 175133233 175134551 - Tomm40l protein_coding retained_intron MGP_C3HHeJ_T0012238.1 MGP_C3HHeJ_G0010342.1 mouse_genomes_project 1 181468610 181468915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022159.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139501800 139625330 - MGP_C3HHeJ_P0022159 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022160.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139503505 139613682 - MGP_C3HHeJ_P0022160 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022161.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139504543 139625262 - MGP_C3HHeJ_P0022161 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022162.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139504692 139617546 - MGP_C3HHeJ_P0022162 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0022163.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139551138 139604717 - Nr5a2 protein_coding retained_intron MGP_C3HHeJ_T0022164.1 MGP_C3HHeJ_G0016313.1 mouse_genomes_project 1 139605118 139613293 - MGP_C3HHeJ_P0022164 Nr5a2 protein_coding protein_coding MGP_C3HHeJ_T0005878.1 MGP_C3HHeJ_G0004919.1 mouse_genomes_project 1 158870237 158877534 - Gm5532 lincRNA lincRNA MGP_C3HHeJ_T0005879.1 MGP_C3HHeJ_G0004919.1 mouse_genomes_project 1 158875438 158877566 - Gm5532 lincRNA lincRNA MGP_C3HHeJ_T0098624.1 MGP_C3HHeJ_G0036818.1 mouse_genomes_project 1 68472429 68472523 - Gm25542 snRNA snRNA MGP_C3HHeJ_T0000539.1 MGP_C3HHeJ_G0000486.1 mouse_genomes_project 1 94713532 94715919 + TEC TEC MGP_C3HHeJ_T0000607.1 MGP_C3HHeJ_G0000553.1 mouse_genomes_project 1 136979209 136980191 - TEC TEC MGP_C3HHeJ_T0022188.1 MGP_C3HHeJ_G0016318.1 mouse_genomes_project 1 141578287 141583155 - MGP_C3HHeJ_P0022188 2310009B15Rik protein_coding protein_coding MGP_C3HHeJ_T0022189.1 MGP_C3HHeJ_G0016318.1 mouse_genomes_project 1 141578288 141580655 - 2310009B15Rik protein_coding retained_intron MGP_C3HHeJ_T0022190.1 MGP_C3HHeJ_G0016318.1 mouse_genomes_project 1 141578337 141583150 - MGP_C3HHeJ_P0022190 2310009B15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000351.1 MGP_C3HHeJ_G0000301.1 mouse_genomes_project 1 10534565 10536487 - TEC TEC MGP_C3HHeJ_T0005961.1 MGP_C3HHeJ_G0004981.1 mouse_genomes_project 1 189866835 189869750 + Gm34342 lincRNA lincRNA MGP_C3HHeJ_T0000654.1 MGP_C3HHeJ_G0000599.1 mouse_genomes_project 1 156510334 156513675 - TEC TEC MGP_C3HHeJ_T0005652.1 MGP_C3HHeJ_G0004740.1 mouse_genomes_project 1 50736626 50741863 - Gm17767 lincRNA lincRNA MGP_C3HHeJ_T0005653.1 MGP_C3HHeJ_G0004740.1 mouse_genomes_project 1 50739038 50829146 - Gm17767 lincRNA lincRNA MGP_C3HHeJ_T0005832.1 MGP_C3HHeJ_G0004882.1 mouse_genomes_project 1 136336682 136339882 + Gm28441 lincRNA lincRNA MGP_C3HHeJ_T0019460.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45910161 45955755 - MGP_C3HHeJ_P0019460 Slc39a10 protein_coding protein_coding MGP_C3HHeJ_T0019461.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45919624 45937898 - Slc39a10 protein_coding retained_intron MGP_C3HHeJ_T0019462.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45937638 45993888 - MGP_C3HHeJ_P0019462 Slc39a10 protein_coding protein_coding MGP_C3HHeJ_T0019463.1 MGP_C3HHeJ_G0015771.1 mouse_genomes_project 1 45937736 45989107 - MGP_C3HHeJ_P0019463 Slc39a10 protein_coding protein_coding MGP_C3HHeJ_T0000531.1 MGP_C3HHeJ_G0000478.1 mouse_genomes_project 1 90834380 90836419 + TEC TEC MGP_C3HHeJ_T0019825.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 58999168 59098153 + MGP_C3HHeJ_P0019825 Cdk15 protein_coding protein_coding MGP_C3HHeJ_T0019826.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 58999169 59097703 + MGP_C3HHeJ_P0019826 Cdk15 protein_coding protein_coding MGP_C3HHeJ_T0019827.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 58999390 59000141 + Cdk15 protein_coding processed_transcript MGP_C3HHeJ_T0019828.1 MGP_C3HHeJ_G0015835.1 mouse_genomes_project 1 59046903 59097782 + Cdk15 protein_coding processed_transcript MGP_C3HHeJ_T0023600.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185125893 185154141 - MGP_C3HHeJ_P0023600 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023601.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185125893 185156676 - MGP_C3HHeJ_P0023601 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023602.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185127674 185156594 - MGP_C3HHeJ_P0023602 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023603.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185127806 185139287 - MGP_C3HHeJ_P0023603 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023604.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185128046 185156637 - MGP_C3HHeJ_P0023604 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023605.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185130778 185156617 - MGP_C3HHeJ_P0023605 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023606.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185130785 185142753 - MGP_C3HHeJ_P0023606 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023607.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185131860 185139578 - Coq8a protein_coding retained_intron MGP_C3HHeJ_T0023608.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139662 185156617 - MGP_C3HHeJ_P0023608 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023609.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139727 185154139 - MGP_C3HHeJ_P0023609 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023610.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139764 185156731 - MGP_C3HHeJ_P0023610 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023611.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139791 185143456 - MGP_C3HHeJ_P0023611 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023612.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139797 185156628 - MGP_C3HHeJ_P0023612 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023613.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139800 185154318 - MGP_C3HHeJ_P0023613 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023614.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139851 185156628 - MGP_C3HHeJ_P0023614 Coq8a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023615.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185139903 185161190 - MGP_C3HHeJ_P0023615 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0023616.1 MGP_C3HHeJ_G0016628.1 mouse_genomes_project 1 185142828 185156558 - MGP_C3HHeJ_P0023616 Coq8a protein_coding protein_coding MGP_C3HHeJ_T0011944.1 MGP_C3HHeJ_G0010048.1 mouse_genomes_project 1 54654429 54659179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018519.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1987592 2103765 - MGP_C3HHeJ_P0018519 Rgs20 protein_coding protein_coding MGP_C3HHeJ_T0018520.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1987595 2159347 - MGP_C3HHeJ_P0018520 Rgs20 protein_coding protein_coding MGP_C3HHeJ_T0018521.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1988465 2103765 - MGP_C3HHeJ_P0018521 Rgs20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018522.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 1990333 2159344 - MGP_C3HHeJ_P0018522 Rgs20 protein_coding protein_coding MGP_C3HHeJ_T0018523.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 2001967 2103765 - Rgs20 protein_coding retained_intron MGP_C3HHeJ_T0018524.1 MGP_C3HHeJ_G0015586.1 mouse_genomes_project 1 2151226 2159335 - Rgs20 protein_coding processed_transcript MGP_C3HHeJ_T0016745.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6675262 6743999 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0016746.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6677880 6744044 - 2610203C22Rik processed_transcript retained_intron MGP_C3HHeJ_T0016747.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6713649 6744051 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0016748.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6714254 6744082 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0016749.1 MGP_C3HHeJ_G0014848.1 mouse_genomes_project 1 6716657 6744071 - 2610203C22Rik processed_transcript antisense MGP_C3HHeJ_T0000517.1 MGP_C3HHeJ_G0000464.1 mouse_genomes_project 1 87319834 87321009 + TEC TEC MGP_C3HHeJ_T0000458.1 MGP_C3HHeJ_G0000405.1 mouse_genomes_project 1 60691710 60693111 + TEC TEC MGP_C3HHeJ_T0005918.1 MGP_C3HHeJ_G0004950.1 mouse_genomes_project 1 174851001 174855563 + Gm10522 lincRNA lincRNA MGP_C3HHeJ_T0005791.1 MGP_C3HHeJ_G0004850.1 mouse_genomes_project 1 109688207 109722175 + D830032E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005792.1 MGP_C3HHeJ_G0004850.1 mouse_genomes_project 1 109688233 109722188 + D830032E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005793.1 MGP_C3HHeJ_G0004850.1 mouse_genomes_project 1 109707654 109802057 + D830032E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005774.1 MGP_C3HHeJ_G0004836.1 mouse_genomes_project 1 97285171 97317074 - 1700063A18Rik lincRNA lincRNA MGP_C3HHeJ_T0002738.1 MGP_C3HHeJ_G0002603.1 mouse_genomes_project 1 52432059 52433642 + Gm28777 antisense antisense MGP_C3HHeJ_T0098309.1 MGP_C3HHeJ_G0036521.1 mouse_genomes_project 1 35212599 35215530 - Gm38115 sense_intronic sense_intronic MGP_C3HHeJ_T0012120.1 MGP_C3HHeJ_G0010224.1 mouse_genomes_project 1 123581490 123581955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005624.1 MGP_C3HHeJ_G0004724.1 mouse_genomes_project 1 40823941 40824404 - Gm29664 lincRNA lincRNA MGP_C3HHeJ_T0020675.1 MGP_C3HHeJ_G0015990.1 mouse_genomes_project 1 83619814 83620806 + MGP_C3HHeJ_P0020675 Krtap28-13 protein_coding protein_coding MGP_C3HHeJ_T0018892.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21803599 21881806 + MGP_C3HHeJ_P0018892 Col9a1 protein_coding protein_coding MGP_C3HHeJ_T0018893.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21823142 21881806 + MGP_C3HHeJ_P0018893 Col9a1 protein_coding protein_coding MGP_C3HHeJ_T0018894.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21824972 21849081 + Col9a1 protein_coding processed_transcript MGP_C3HHeJ_T0018895.1 MGP_C3HHeJ_G0015660.1 mouse_genomes_project 1 21857814 21859253 + Col9a1 protein_coding processed_transcript MGP_C3HHeJ_T0099899.1 MGP_C3HHeJ_G0038093.1 mouse_genomes_project 1 164588810 164588872 + Gm22489 snoRNA snoRNA MGP_C3HHeJ_T0018611.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029033 7070467 + MGP_C3HHeJ_P0018611 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018612.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029033 7045202 + MGP_C3HHeJ_P0018612 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018613.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029063 7069967 + MGP_C3HHeJ_P0018613 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018614.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7029065 7071597 + MGP_C3HHeJ_P0018614 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018615.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7031732 7043943 + MGP_C3HHeJ_P0018615 Mcmdc2 protein_coding protein_coding MGP_C3HHeJ_T0018616.1 MGP_C3HHeJ_G0015601.1 mouse_genomes_project 1 7061773 7070467 + MGP_C3HHeJ_P0018616 Mcmdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021517.1 MGP_C3HHeJ_G0016175.1 mouse_genomes_project 1 122391831 122394422 + MGP_C3HHeJ_P0021517 C1ql2 protein_coding protein_coding MGP_C3HHeJ_T0021061.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92449522 92473999 - MGP_C3HHeJ_P0021061 Ilkap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021062.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92449526 92459983 - MGP_C3HHeJ_P0021062 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021063.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451491 92474082 - MGP_C3HHeJ_P0021063 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021064.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451492 92474054 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0021065.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451619 92459930 - MGP_C3HHeJ_P0021065 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021066.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451671 92454559 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0021067.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451714 92474092 - MGP_C3HHeJ_P0021067 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021068.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92451715 92474100 - MGP_C3HHeJ_P0021068 Ilkap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021069.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92456396 92474114 - Ilkap protein_coding processed_transcript MGP_C3HHeJ_T0021070.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92459981 92474084 - MGP_C3HHeJ_P0021070 Ilkap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021071.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92460611 92464161 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0021072.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92460700 92474077 - MGP_C3HHeJ_P0021072 Ilkap protein_coding protein_coding MGP_C3HHeJ_T0021073.1 MGP_C3HHeJ_G0016074.1 mouse_genomes_project 1 92465588 92474093 - Ilkap protein_coding retained_intron MGP_C3HHeJ_T0023515.1 MGP_C3HHeJ_G0016609.1 mouse_genomes_project 1 181654998 181891526 - MGP_C3HHeJ_P0023515 Akt3 protein_coding protein_coding MGP_C3HHeJ_T0023516.1 MGP_C3HHeJ_G0016609.1 mouse_genomes_project 1 181657040 181891497 - MGP_C3HHeJ_P0023516 Akt3 protein_coding protein_coding MGP_C3HHeJ_T0023517.1 MGP_C3HHeJ_G0016609.1 mouse_genomes_project 1 181657041 181900894 - MGP_C3HHeJ_P0023517 Akt3 protein_coding protein_coding MGP_C3HHeJ_T0097962.1 MGP_C3HHeJ_G0036174.1 mouse_genomes_project 1 91359242 91359349 + Gm27648 rRNA rRNA MGP_C3HHeJ_T0098608.1 MGP_C3HHeJ_G0036802.1 mouse_genomes_project 1 31432367 31432467 + Gm25792 snRNA snRNA MGP_C3HHeJ_T0023221.1 MGP_C3HHeJ_G0016521.1 mouse_genomes_project 1 175259257 175274909 + MGP_C3HHeJ_P0023221 Pfdn2 protein_coding protein_coding MGP_C3HHeJ_T0023222.1 MGP_C3HHeJ_G0016521.1 mouse_genomes_project 1 175272037 175273621 + Pfdn2 protein_coding processed_transcript MGP_C3HHeJ_T0023855.1 MGP_C3HHeJ_G0016681.1 mouse_genomes_project 1 191936029 191961299 - MGP_C3HHeJ_P0023855 Rrp15 protein_coding protein_coding MGP_C3HHeJ_T0023856.1 MGP_C3HHeJ_G0016681.1 mouse_genomes_project 1 191936143 191961266 - Rrp15 protein_coding retained_intron MGP_C3HHeJ_T0005596.1 MGP_C3HHeJ_G0004702.1 mouse_genomes_project 1 29031573 29110391 - lincRNA lincRNA MGP_C3HHeJ_T0011771.1 MGP_C3HHeJ_G0009875.1 mouse_genomes_project 1 4332232 4332410 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021761.1 MGP_C3HHeJ_G0016231.1 mouse_genomes_project 1 134323933 134347845 + MGP_C3HHeJ_P0021761 Nucks1 protein_coding protein_coding MGP_C3HHeJ_T0021762.1 MGP_C3HHeJ_G0016231.1 mouse_genomes_project 1 134323955 134351587 + MGP_C3HHeJ_P0021762 Nucks1 protein_coding protein_coding MGP_C3HHeJ_T0021763.1 MGP_C3HHeJ_G0016231.1 mouse_genomes_project 1 134344328 134345237 + Nucks1 protein_coding retained_intron MGP_C3HHeJ_T0019535.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51893824 51962680 - MGP_C3HHeJ_P0019535 Mfsd6 protein_coding protein_coding MGP_C3HHeJ_T0019536.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51893836 51962263 - MGP_C3HHeJ_P0019536 Mfsd6 protein_coding protein_coding MGP_C3HHeJ_T0019537.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51894973 51897837 - Mfsd6 protein_coding retained_intron MGP_C3HHeJ_T0019538.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51897524 51962680 - MGP_C3HHeJ_P0019538 Mfsd6 protein_coding protein_coding MGP_C3HHeJ_T0019539.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51898441 51908278 - Mfsd6 protein_coding processed_transcript MGP_C3HHeJ_T0019540.1 MGP_C3HHeJ_G0015781.1 mouse_genomes_project 1 51914549 51962576 - Mfsd6 protein_coding retained_intron MGP_C3HHeJ_T0012121.1 MGP_C3HHeJ_G0010225.1 mouse_genomes_project 1 123706560 123706743 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101090.1 MGP_C3HHeJ_G0039279.1 mouse_genomes_project 1 160185124 160187598 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101091.1 MGP_C3HHeJ_G0039279.1 mouse_genomes_project 1 160185425 160185736 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0000770.1 MGP_C3HHeJ_G0000712.1 mouse_genomes_project 1 198708154 198710727 + TEC TEC MGP_C3HHeJ_T0002917.1 MGP_C3HHeJ_G0002741.1 mouse_genomes_project 1 194630587 194632053 + A430027H14Rik antisense antisense MGP_C3HHeJ_T0002918.1 MGP_C3HHeJ_G0002741.1 mouse_genomes_project 1 194631140 194632029 + A430027H14Rik antisense antisense MGP_C3HHeJ_T0012263.1 MGP_C3HHeJ_G0010367.1 mouse_genomes_project 1 194981331 194981472 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020539.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75815623 75831825 + MGP_C3HHeJ_P0020539 Stk11ip protein_coding unknown_likely_coding MGP_C3HHeJ_T0020540.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75815915 75831819 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020541.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75815935 75821832 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020542.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75823024 75824209 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020543.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75823359 75831819 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020544.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75824399 75827068 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020545.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75827261 75828988 + Stk11ip protein_coding retained_intron MGP_C3HHeJ_T0020546.1 MGP_C3HHeJ_G0015962.1 mouse_genomes_project 1 75827768 75828515 + Stk11ip protein_coding processed_transcript MGP_C3HHeJ_T0019438.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44523726 44552185 + MGP_C3HHeJ_P0019438 Wdr75 protein_coding protein_coding MGP_C3HHeJ_T0019439.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44524009 44552170 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019440.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44524063 44530886 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019441.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44524067 44532459 + MGP_C3HHeJ_P0019441 Wdr75 protein_coding protein_coding MGP_C3HHeJ_T0019442.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44530519 44552081 + Wdr75 protein_coding processed_transcript MGP_C3HHeJ_T0019443.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44532216 44533986 + Wdr75 protein_coding processed_transcript MGP_C3HHeJ_T0019444.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44543246 44552185 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019445.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44550834 44552079 + Wdr75 protein_coding retained_intron MGP_C3HHeJ_T0019446.1 MGP_C3HHeJ_G0015765.1 mouse_genomes_project 1 44551126 44552182 + MGP_C3HHeJ_P0019446 Wdr75 protein_coding protein_coding MGP_C3HHeJ_T0019359.1 MGP_C3HHeJ_G0015750.1 mouse_genomes_project 1 41746327 41786985 - MGP_C3HHeJ_P0019359 Fhl2 protein_coding protein_coding MGP_C3HHeJ_T0012005.1 MGP_C3HHeJ_G0010109.1 mouse_genomes_project 1 72232731 72233614 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023429.1 MGP_C3HHeJ_G0016587.1 mouse_genomes_project 1 178717187 178718134 + MGP_C3HHeJ_P0023429 Olfr424 protein_coding protein_coding MGP_C3HHeJ_T0023866.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192426997 192447208 + Gpatch2 protein_coding processed_transcript MGP_C3HHeJ_T0023867.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427000 192569374 + MGP_C3HHeJ_P0023867 Gpatch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023868.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427011 192572186 + MGP_C3HHeJ_P0023868 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0023869.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427027 192522431 + Gpatch2 protein_coding retained_intron MGP_C3HHeJ_T0023870.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427033 192445794 + MGP_C3HHeJ_P0023870 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0023871.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427035 192445278 + MGP_C3HHeJ_P0023871 Gpatch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023872.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427113 192568311 + MGP_C3HHeJ_P0023872 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0023873.1 MGP_C3HHeJ_G0016684.1 mouse_genomes_project 1 192427232 192570457 + MGP_C3HHeJ_P0023873 Gpatch2 protein_coding protein_coding MGP_C3HHeJ_T0011774.1 MGP_C3HHeJ_G0009878.1 mouse_genomes_project 1 4753170 4753456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020789.1 MGP_C3HHeJ_G0016011.1 mouse_genomes_project 1 87009855 87011731 + B3gnt7 protein_coding retained_intron MGP_C3HHeJ_T0020790.1 MGP_C3HHeJ_G0016011.1 mouse_genomes_project 1 87010257 87014328 + MGP_C3HHeJ_P0020790 B3gnt7 protein_coding protein_coding MGP_C3HHeJ_T0020791.1 MGP_C3HHeJ_G0016011.1 mouse_genomes_project 1 87010554 87012872 + MGP_C3HHeJ_P0020791 B3gnt7 protein_coding protein_coding MGP_C3HHeJ_T0005824.1 MGP_C3HHeJ_G0004874.1 mouse_genomes_project 1 132580182 132592604 - Gm16081 lincRNA lincRNA MGP_C3HHeJ_T0098646.1 MGP_C3HHeJ_G0036840.1 mouse_genomes_project 1 126691625 126691729 + Gm25578 snRNA snRNA MGP_C3HHeJ_T0005787.1 MGP_C3HHeJ_G0004846.1 mouse_genomes_project 1 107821640 107840589 - Gm20753 lincRNA lincRNA MGP_C3HHeJ_T0022990.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975534 170036847 + MGP_C3HHeJ_P0022990 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022991.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022991 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022992.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022992 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022993.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022993 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022994.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022994 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022995.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022995 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0022996.1 MGP_C3HHeJ_G0016469.1 mouse_genomes_project 1 169975588 170031294 + MGP_C3HHeJ_P0022996 Ildr2 protein_coding protein_coding MGP_C3HHeJ_T0005856.1 MGP_C3HHeJ_G0004901.1 mouse_genomes_project 1 142119917 142142463 + 4933436E23Rik lincRNA lincRNA MGP_C3HHeJ_T0000656.1 MGP_C3HHeJ_G0000601.1 mouse_genomes_project 1 156976764 156978680 + TEC TEC MGP_C3HHeJ_T0023165.1 MGP_C3HHeJ_G0016514.1 mouse_genomes_project 1 175164164 175175299 + MGP_C3HHeJ_P0023165 Adamts4 protein_coding protein_coding MGP_C3HHeJ_T0023166.1 MGP_C3HHeJ_G0016514.1 mouse_genomes_project 1 175165852 175175299 + MGP_C3HHeJ_P0023166 Adamts4 protein_coding protein_coding MGP_C3HHeJ_T0021474.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121568878 121673864 - MGP_C3HHeJ_P0021474 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021475.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121571972 121673862 - MGP_C3HHeJ_P0021475 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021476.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121578076 121624547 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021477.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121602379 121604667 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021478.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121614983 121673928 - MGP_C3HHeJ_P0021478 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021479.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121619315 121673545 - MGP_C3HHeJ_P0021479 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0021480.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121619683 121623482 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021481.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121641806 121658520 - Epb41l5 protein_coding retained_intron MGP_C3HHeJ_T0021482.1 MGP_C3HHeJ_G0016166.1 mouse_genomes_project 1 121646100 121673552 - MGP_C3HHeJ_P0021482 Epb41l5 protein_coding protein_coding MGP_C3HHeJ_T0011891.1 MGP_C3HHeJ_G0009995.1 mouse_genomes_project 1 40679756 40681718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005913.1 MGP_C3HHeJ_G0004946.1 mouse_genomes_project 1 171035800 171036499 + Gm2453 lincRNA lincRNA MGP_C3HHeJ_T0005914.1 MGP_C3HHeJ_G0004946.1 mouse_genomes_project 1 171036216 171040589 + Gm2453 lincRNA lincRNA MGP_C3HHeJ_T0000441.1 MGP_C3HHeJ_G0000388.1 mouse_genomes_project 1 53972150 53973811 - TEC TEC MGP_C3HHeJ_T0020585.1 MGP_C3HHeJ_G0015970.1 mouse_genomes_project 1 79069809 79084630 + MGP_C3HHeJ_P0020585 Utp14b protein_coding protein_coding MGP_C3HHeJ_T0020586.1 MGP_C3HHeJ_G0015970.1 mouse_genomes_project 1 79070211 79079339 + MGP_C3HHeJ_P0020586 Utp14b protein_coding protein_coding MGP_C3HHeJ_T0021234.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94807976 94824792 - MGP_C3HHeJ_P0021234 Stk25 protein_coding protein_coding MGP_C3HHeJ_T0021235.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94810127 94824699 - Stk25 protein_coding retained_intron MGP_C3HHeJ_T0021236.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94810584 94813587 - Stk25 protein_coding retained_intron MGP_C3HHeJ_T0021237.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94811621 94814014 - Stk25 protein_coding retained_intron MGP_C3HHeJ_T0021238.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94814075 94824549 - MGP_C3HHeJ_P0021238 Stk25 protein_coding protein_coding MGP_C3HHeJ_T0021239.1 MGP_C3HHeJ_G0016111.1 mouse_genomes_project 1 94815356 94849779 - MGP_C3HHeJ_P0021239 Stk25 protein_coding protein_coding MGP_C3HHeJ_T0000734.1 MGP_C3HHeJ_G0000678.1 mouse_genomes_project 1 185324723 185332879 + TEC TEC MGP_C3HHeJ_T0022905.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168823133 168848912 - MGP_C3HHeJ_P0022905 Tbx19 protein_coding protein_coding MGP_C3HHeJ_T0022906.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168824167 168835019 - Tbx19 protein_coding processed_transcript MGP_C3HHeJ_T0022907.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168824225 168839126 - MGP_C3HHeJ_P0022907 Tbx19 protein_coding protein_coding MGP_C3HHeJ_T0022908.1 MGP_C3HHeJ_G0016454.1 mouse_genomes_project 1 168827737 168834704 - Tbx19 protein_coding processed_transcript MGP_C3HHeJ_T0020091.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66707881 + MGP_C3HHeJ_P0020091 Rpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020092.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66703592 + MGP_C3HHeJ_P0020092 Rpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020093.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66707881 + MGP_C3HHeJ_P0020093 Rpe protein_coding protein_coding MGP_C3HHeJ_T0020094.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66688984 66707881 + MGP_C3HHeJ_P0020094 Rpe protein_coding protein_coding MGP_C3HHeJ_T0020095.1 MGP_C3HHeJ_G0015883.1 mouse_genomes_project 1 66689060 66706160 + MGP_C3HHeJ_P0020095 Rpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002894.1 MGP_C3HHeJ_G0002721.1 mouse_genomes_project 1 181555924 181560634 - Gm15423 antisense antisense MGP_C3HHeJ_T0011961.1 MGP_C3HHeJ_G0010065.1 mouse_genomes_project 1 60090636 60090863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011903.1 MGP_C3HHeJ_G0010007.1 mouse_genomes_project 1 43624639 43625384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012119.1 MGP_C3HHeJ_G0010223.1 mouse_genomes_project 1 123567265 123567484 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005852.1 MGP_C3HHeJ_G0004898.1 mouse_genomes_project 1 140906833 140909503 - Gm28556 lincRNA lincRNA MGP_C3HHeJ_T0005721.1 MGP_C3HHeJ_G0004790.1 mouse_genomes_project 1 76805297 76818742 + Gm17751 lincRNA lincRNA MGP_C3HHeJ_T0005722.1 MGP_C3HHeJ_G0004790.1 mouse_genomes_project 1 76805297 76819324 + Gm17751 lincRNA lincRNA MGP_C3HHeJ_T0000507.1 MGP_C3HHeJ_G0000454.1 mouse_genomes_project 1 83343114 83344160 - TEC TEC MGP_C3HHeJ_T0022215.1 MGP_C3HHeJ_G0016323.1 mouse_genomes_project 1 142242496 142269098 + MGP_C3HHeJ_P0022215 F13b protein_coding protein_coding MGP_C3HHeJ_T0022216.1 MGP_C3HHeJ_G0016323.1 mouse_genomes_project 1 142261737 142263247 + F13b protein_coding processed_transcript MGP_C3HHeJ_T0018842.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18726383 18751993 + MGP_C3HHeJ_P0018842 Gsta3 protein_coding protein_coding MGP_C3HHeJ_T0018843.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18726401 18751353 + MGP_C3HHeJ_P0018843 Gsta3 protein_coding protein_coding MGP_C3HHeJ_T0018844.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18726423 18751178 + MGP_C3HHeJ_P0018844 Gsta3 protein_coding protein_coding MGP_C3HHeJ_T0018845.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18736099 18751294 + MGP_C3HHeJ_P0018845 Gsta3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018846.1 MGP_C3HHeJ_G0015648.1 mouse_genomes_project 1 18739848 18742640 + Gsta3 protein_coding retained_intron MGP_C3HHeJ_T0012144.1 MGP_C3HHeJ_G0010248.1 mouse_genomes_project 1 138469906 138470275 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020007.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64528283 64539078 - MGP_C3HHeJ_P0020007 Mettl21a protein_coding protein_coding MGP_C3HHeJ_T0020008.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64528290 64539004 - MGP_C3HHeJ_P0020008 Mettl21a protein_coding protein_coding MGP_C3HHeJ_T0020009.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64529766 64537467 - Mettl21a protein_coding processed_transcript MGP_C3HHeJ_T0020010.1 MGP_C3HHeJ_G0015866.1 mouse_genomes_project 1 64536037 64539020 - Mettl21a protein_coding processed_transcript MGP_C3HHeJ_T0005847.1 MGP_C3HHeJ_G0004894.1 mouse_genomes_project 1 139343611 139378546 + Platr22 lincRNA lincRNA MGP_C3HHeJ_T0002907.1 MGP_C3HHeJ_G0002731.1 mouse_genomes_project 1 190064437 190084305 + Gm38251 antisense antisense MGP_C3HHeJ_T0009473.1 MGP_C3HHeJ_G0007606.1 mouse_genomes_project 1 190399237 190399306 + Mir664 miRNA miRNA MGP_C3HHeJ_T0005975.1 MGP_C3HHeJ_G0004993.1 mouse_genomes_project 1 195752548 195767877 + Gm29678 lincRNA lincRNA MGP_C3HHeJ_T0023167.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184430 175190962 + MGP_C3HHeJ_P0023167 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023168.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184441 175188381 + MGP_C3HHeJ_P0023168 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023169.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184445 175190963 + MGP_C3HHeJ_P0023169 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023170.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184445 175186032 + MGP_C3HHeJ_P0023170 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023171.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184456 175186133 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0023172.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184467 175190962 + MGP_C3HHeJ_P0023172 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023173.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184476 175190963 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0023174.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184510 175185462 + B4galt3 protein_coding processed_transcript MGP_C3HHeJ_T0023175.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175184920 175185735 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0023176.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175185732 175186697 + MGP_C3HHeJ_P0023176 B4galt3 protein_coding protein_coding MGP_C3HHeJ_T0023177.1 MGP_C3HHeJ_G0016515.1 mouse_genomes_project 1 175187608 175190961 + B4galt3 protein_coding retained_intron MGP_C3HHeJ_T0000512.1 MGP_C3HHeJ_G0000459.1 mouse_genomes_project 1 84996345 84999242 - TEC TEC MGP_C3HHeJ_T0011758.1 MGP_C3HHeJ_G0009862.1 mouse_genomes_project 1 2006454 2006726 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023034.1 MGP_C3HHeJ_G0016482.1 mouse_genomes_project 1 171467022 171624734 + MGP_C3HHeJ_P0023034 Lmx1a protein_coding protein_coding MGP_C3HHeJ_T0023035.1 MGP_C3HHeJ_G0016482.1 mouse_genomes_project 1 171467342 171624734 + MGP_C3HHeJ_P0023035 Lmx1a protein_coding protein_coding MGP_C3HHeJ_T0012188.1 MGP_C3HHeJ_G0010292.1 mouse_genomes_project 1 156159984 156160687 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099828.1 MGP_C3HHeJ_G0038022.1 mouse_genomes_project 1 16437835 16437907 - Gm24075 snoRNA snoRNA MGP_C3HHeJ_T0011998.1 MGP_C3HHeJ_G0010102.1 mouse_genomes_project 1 68378396 68378843 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012135.1 MGP_C3HHeJ_G0010239.1 mouse_genomes_project 1 130746493 130747093 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005788.1 MGP_C3HHeJ_G0004847.1 mouse_genomes_project 1 108072632 108074453 - A530053M12Rik lincRNA lincRNA MGP_C3HHeJ_T0012142.1 MGP_C3HHeJ_G0010246.1 mouse_genomes_project 1 136009878 136010670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011870.1 MGP_C3HHeJ_G0009974.1 mouse_genomes_project 1 32722550 32722842 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020484.1 MGP_C3HHeJ_G0015954.1 mouse_genomes_project 1 75649217 75657459 + MGP_C3HHeJ_P0020484 Des protein_coding protein_coding MGP_C3HHeJ_T0020485.1 MGP_C3HHeJ_G0015954.1 mouse_genomes_project 1 75650405 75651283 + Des protein_coding retained_intron MGP_C3HHeJ_T0020486.1 MGP_C3HHeJ_G0015954.1 mouse_genomes_project 1 75650909 75652518 + Des protein_coding retained_intron MGP_C3HHeJ_T0012227.1 MGP_C3HHeJ_G0010331.1 mouse_genomes_project 1 173387057 173388213 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020300.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74915463 74919299 + MGP_C3HHeJ_P0020300 Bcs1l protein_coding protein_coding MGP_C3HHeJ_T0020301.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74915474 74919625 + MGP_C3HHeJ_P0020301 Bcs1l protein_coding protein_coding MGP_C3HHeJ_T0020302.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74915548 74919364 + MGP_C3HHeJ_P0020302 Bcs1l protein_coding protein_coding MGP_C3HHeJ_T0020303.1 MGP_C3HHeJ_G0015925.1 mouse_genomes_project 1 74917440 74918083 + Bcs1l protein_coding retained_intron MGP_C3HHeJ_T0000409.1 MGP_C3HHeJ_G0000356.1 mouse_genomes_project 1 32206257 32207872 + TEC TEC MGP_C3HHeJ_T0022912.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168905045 168931113 - MGP_C3HHeJ_P0022912 Tiprl protein_coding protein_coding MGP_C3HHeJ_T0022913.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168907676 168921167 - MGP_C3HHeJ_P0022913 Tiprl protein_coding protein_coding MGP_C3HHeJ_T0022914.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168908341 168909287 - Tiprl protein_coding retained_intron MGP_C3HHeJ_T0022915.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168908485 168931166 - MGP_C3HHeJ_P0022915 Tiprl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022916.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168915196 168931092 - Tiprl protein_coding processed_transcript MGP_C3HHeJ_T0022917.1 MGP_C3HHeJ_G0016456.1 mouse_genomes_project 1 168921102 168931102 - Tiprl protein_coding processed_transcript MGP_C3HHeJ_T0011953.1 MGP_C3HHeJ_G0010057.1 mouse_genomes_project 1 58271524 58278707 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005880.1 MGP_C3HHeJ_G0004920.1 mouse_genomes_project 1 160317067 160407164 - Gm28694 lincRNA lincRNA MGP_C3HHeJ_T0000321.1 MGP_C3HHeJ_G0000271.1 mouse_genomes_project 1 401735 404553 - TEC TEC MGP_C3HHeJ_T0009469.1 MGP_C3HHeJ_G0007602.1 mouse_genomes_project 1 181515348 181515428 + Gm25993 miRNA miRNA MGP_C3HHeJ_T0011802.1 MGP_C3HHeJ_G0009906.1 mouse_genomes_project 1 11026169 11029189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011845.1 MGP_C3HHeJ_G0009949.1 mouse_genomes_project 1 26673522 26676007 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019345.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567350 41569634 + Gpr45 protein_coding processed_transcript MGP_C3HHeJ_T0019346.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567441 41654541 + MGP_C3HHeJ_P0019346 Gpr45 protein_coding protein_coding MGP_C3HHeJ_T0019347.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567617 41649163 + Gpr45 protein_coding processed_transcript MGP_C3HHeJ_T0019348.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41567660 41568357 + Gpr45 protein_coding processed_transcript MGP_C3HHeJ_T0019349.1 MGP_C3HHeJ_G0015747.1 mouse_genomes_project 1 41651144 41652690 + MGP_C3HHeJ_P0019349 Gpr45 protein_coding protein_coding MGP_C3HHeJ_T0012111.1 MGP_C3HHeJ_G0010215.1 mouse_genomes_project 1 121253251 121254053 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011696.1 MGP_C3HHeJ_G0009827.1 mouse_genomes_project 1 178731961 178733011 + MGP_C3HHeJ_P0011696 Olfr421-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0002854.1 MGP_C3HHeJ_G0002689.1 mouse_genomes_project 1 160283930 160284289 + 4930439D14Rik antisense antisense MGP_C3HHeJ_T0022281.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149473465 149930617 + MGP_C3HHeJ_P0022281 Brinp3 protein_coding protein_coding MGP_C3HHeJ_T0022282.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476319 149768239 + MGP_C3HHeJ_P0022282 Brinp3 protein_coding protein_coding MGP_C3HHeJ_T0022283.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476392 149930618 + MGP_C3HHeJ_P0022283 Brinp3 protein_coding protein_coding MGP_C3HHeJ_T0022284.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476409 149930612 + MGP_C3HHeJ_P0022284 Brinp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022285.1 MGP_C3HHeJ_G0016338.1 mouse_genomes_project 1 149476443 149497255 + Brinp3 protein_coding retained_intron MGP_C3HHeJ_T0018896.1 MGP_C3HHeJ_G0015661.1 mouse_genomes_project 1 21891939 22097422 - Col19a1 protein_coding processed_transcript MGP_C3HHeJ_T0018897.1 MGP_C3HHeJ_G0015661.1 mouse_genomes_project 1 21894037 22229845 - MGP_C3HHeJ_P0018897 Col19a1 protein_coding protein_coding MGP_C3HHeJ_T0018898.1 MGP_C3HHeJ_G0015661.1 mouse_genomes_project 1 21911551 22229784 - MGP_C3HHeJ_P0018898 Col19a1 protein_coding protein_coding MGP_C3HHeJ_T0098610.1 MGP_C3HHeJ_G0036804.1 mouse_genomes_project 1 32153813 32153906 - Gm23792 snRNA snRNA MGP_C3HHeJ_T0000550.1 MGP_C3HHeJ_G0000497.1 mouse_genomes_project 1 107358937 107363291 + TEC TEC MGP_C3HHeJ_T0012024.1 MGP_C3HHeJ_G0010128.1 mouse_genomes_project 1 83359675 83360066 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012085.1 MGP_C3HHeJ_G0010189.1 mouse_genomes_project 1 110411445 110411623 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000336.1 MGP_C3HHeJ_G0000286.1 mouse_genomes_project 1 5585158 5588660 - TEC TEC MGP_C3HHeJ_T0012161.1 MGP_C3HHeJ_G0010265.1 mouse_genomes_project 1 145655963 145656258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005962.1 MGP_C3HHeJ_G0004982.1 mouse_genomes_project 1 190236722 190241960 + 4930433J02Rik lincRNA lincRNA MGP_C3HHeJ_T0022263.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146926601 146931397 - MGP_C3HHeJ_P0022263 Rgs2 protein_coding protein_coding MGP_C3HHeJ_T0022264.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146928943 146931371 - MGP_C3HHeJ_P0022264 Rgs2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022265.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146929146 146931268 - MGP_C3HHeJ_P0022265 Rgs2 protein_coding protein_coding MGP_C3HHeJ_T0022266.1 MGP_C3HHeJ_G0016333.1 mouse_genomes_project 1 146929779 146931357 - Rgs2 protein_coding retained_intron MGP_C3HHeJ_T0023385.1 MGP_C3HHeJ_G0016565.1 mouse_genomes_project 1 177533467 177534409 + MGP_C3HHeJ_P0023385 Olfr218 protein_coding protein_coding MGP_C3HHeJ_T0023008.1 MGP_C3HHeJ_G0016473.1 mouse_genomes_project 1 170355441 170374917 - MGP_C3HHeJ_P0023008 Gm4847 protein_coding protein_coding MGP_C3HHeJ_T0000466.1 MGP_C3HHeJ_G0000413.1 mouse_genomes_project 1 62649063 62651611 + TEC TEC MGP_C3HHeJ_T0005816.1 MGP_C3HHeJ_G0004867.1 mouse_genomes_project 1 123271939 123275202 + Gm29359 lincRNA lincRNA MGP_C3HHeJ_T0005603.1 MGP_C3HHeJ_G0004708.1 mouse_genomes_project 1 33863747 33891379 - Gm37068 lincRNA lincRNA MGP_C3HHeJ_T0000552.1 MGP_C3HHeJ_G0000499.1 mouse_genomes_project 1 107738385 107741696 - TEC TEC MGP_C3HHeJ_T0012012.1 MGP_C3HHeJ_G0010116.1 mouse_genomes_project 1 75940981 75941788 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101079.1 MGP_C3HHeJ_G0039273.1 mouse_genomes_project 1 32603823 32604652 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011162.1 MGP_C3HHeJ_G0009295.1 mouse_genomes_project 1 144197764 144197878 + Gm22016 misc_RNA misc_RNA MGP_C3HHeJ_T0023996.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197133854 197206754 + MGP_C3HHeJ_P0023996 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0023997.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197133854 197135418 + MGP_C3HHeJ_P0023997 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0023998.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197134047 197135806 + Lpgat1 protein_coding retained_intron MGP_C3HHeJ_T0023999.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197134409 197202476 + MGP_C3HHeJ_P0023999 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0024000.1 MGP_C3HHeJ_G0016708.1 mouse_genomes_project 1 197134541 197182867 + MGP_C3HHeJ_P0024000 Lpgat1 protein_coding protein_coding MGP_C3HHeJ_T0018671.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8131111 8447977 + MGP_C3HHeJ_P0018671 Prex2 protein_coding protein_coding MGP_C3HHeJ_T0018672.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8131164 8134229 + Prex2 protein_coding retained_intron MGP_C3HHeJ_T0018673.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8234079 8286543 + Prex2 protein_coding retained_intron MGP_C3HHeJ_T0018674.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8276983 8297048 + Prex2 protein_coding retained_intron MGP_C3HHeJ_T0018677.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8400864 8442228 + MGP_C3HHeJ_P0018677 Prex2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018678.1 MGP_C3HHeJ_G0015608.1 mouse_genomes_project 1 8422119 8442427 + MGP_C3HHeJ_P0018678 Prex2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020831.1 MGP_C3HHeJ_G0016024.1 mouse_genomes_project 1 87987522 87992615 + MGP_C3HHeJ_P0020831 Prss56 protein_coding protein_coding MGP_C3HHeJ_T0005949.1 MGP_C3HHeJ_G0004975.1 mouse_genomes_project 1 189002999 189003825 + Gm38108 lincRNA lincRNA MGP_C3HHeJ_T0002741.1 MGP_C3HHeJ_G0002605.1 mouse_genomes_project 1 54726929 54735673 + Gm10561 antisense antisense MGP_C3HHeJ_T0005627.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41190488 41298472 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005628.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250081 41296756 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005629.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250087 41269387 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005630.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41298489 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005631.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41253564 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005632.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41298489 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005633.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250088 41296781 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005634.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250089 41270068 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005635.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250089 41296721 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005636.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41250266 41269308 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005637.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41269247 41298506 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0005638.1 MGP_C3HHeJ_G0004727.1 mouse_genomes_project 1 41296654 41298489 - Pantr1 lincRNA lincRNA MGP_C3HHeJ_T0021980.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980248 136991083 + Klhl12 protein_coding retained_intron MGP_C3HHeJ_T0021981.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980248 137016023 + MGP_C3HHeJ_P0021981 Klhl12 protein_coding protein_coding MGP_C3HHeJ_T0021982.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980248 137016168 + MGP_C3HHeJ_P0021982 Klhl12 protein_coding protein_coding MGP_C3HHeJ_T0021983.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136980272 137016023 + MGP_C3HHeJ_P0021983 Klhl12 protein_coding protein_coding MGP_C3HHeJ_T0021984.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136993144 136998227 + Klhl12 protein_coding retained_intron MGP_C3HHeJ_T0021985.1 MGP_C3HHeJ_G0016277.1 mouse_genomes_project 1 136999642 137011086 + Klhl12 protein_coding retained_intron MGP_C3HHeJ_T0023446.1 MGP_C3HHeJ_G0016596.1 mouse_genomes_project 1 179425297 179514909 - MGP_C3HHeJ_P0023446 Grem2 protein_coding protein_coding MGP_C3HHeJ_T0009431.1 MGP_C3HHeJ_G0007564.1 mouse_genomes_project 1 94445063 94445125 + Mir6901 miRNA miRNA MGP_C3HHeJ_T0019039.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34394992 34499727 - MGP_C3HHeJ_P0019039 Uggt1 protein_coding protein_coding MGP_C3HHeJ_T0019040.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34398469 34420882 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019041.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34398473 34499583 - MGP_C3HHeJ_P0019041 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019042.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34401126 34405533 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019043.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34416799 34428416 - MGP_C3HHeJ_P0019043 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019044.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34417278 34437539 - MGP_C3HHeJ_P0019044 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019045.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34418424 34420012 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019046.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34433577 34499529 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019047.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34440794 34465773 - MGP_C3HHeJ_P0019047 Uggt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019048.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34450885 34463946 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0019049.1 MGP_C3HHeJ_G0015689.1 mouse_genomes_project 1 34499060 34500142 - Uggt1 protein_coding retained_intron MGP_C3HHeJ_T0099862.1 MGP_C3HHeJ_G0038056.1 mouse_genomes_project 1 86780795 86780917 + Gm22786 snoRNA snoRNA MGP_C3HHeJ_T0018794.1 MGP_C3HHeJ_G0015631.1 mouse_genomes_project 1 14354826 14398344 - MGP_C3HHeJ_P0018794 Jph1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018795.1 MGP_C3HHeJ_G0015631.1 mouse_genomes_project 1 14388723 14497676 - MGP_C3HHeJ_P0018795 Jph1 protein_coding protein_coding MGP_C3HHeJ_T0099915.1 MGP_C3HHeJ_G0038109.1 mouse_genomes_project 1 191891093 191891228 + Gm26169 snoRNA snoRNA MGP_C3HHeJ_T0018787.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059017 14075921 + MGP_C3HHeJ_P0018787 Tmem70 protein_coding protein_coding MGP_C3HHeJ_T0018788.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059020 14074940 + Tmem70 protein_coding processed_transcript MGP_C3HHeJ_T0018789.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059020 14076001 + MGP_C3HHeJ_P0018789 Tmem70 protein_coding protein_coding MGP_C3HHeJ_T0018790.1 MGP_C3HHeJ_G0015629.1 mouse_genomes_project 1 14059046 14059622 + Tmem70 protein_coding processed_transcript MGP_C3HHeJ_T0002817.1 MGP_C3HHeJ_G0002660.1 mouse_genomes_project 1 133656792 133657839 + Gm28914 antisense antisense MGP_C3HHeJ_T0000741.1 MGP_C3HHeJ_G0000685.1 mouse_genomes_project 1 187054740 187056965 - TEC TEC MGP_C3HHeJ_T0000432.1 MGP_C3HHeJ_G0000379.1 mouse_genomes_project 1 43271648 43276989 + TEC TEC MGP_C3HHeJ_T0022307.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153523797 153580825 + MGP_C3HHeJ_P0022307 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022308.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153524209 153580945 + MGP_C3HHeJ_P0022308 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022309.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153524343 153526461 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022310.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153542920 153544890 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022311.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153545715 153547331 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022312.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153555671 153559275 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022313.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153560285 153571314 + MGP_C3HHeJ_P0022313 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022314.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153561319 153571311 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022315.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153568347 153574225 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022316.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153569930 153580937 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022317.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153571195 153580937 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022318.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153576927 153580937 + MGP_C3HHeJ_P0022318 Tpr protein_coding protein_coding MGP_C3HHeJ_T0022319.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153578464 153580939 + Tpr protein_coding retained_intron MGP_C3HHeJ_T0022320.1 MGP_C3HHeJ_G0016343.1 mouse_genomes_project 1 153579880 153580801 + Tpr protein_coding processed_transcript MGP_C3HHeJ_T0002755.1 MGP_C3HHeJ_G0002615.1 mouse_genomes_project 1 62300213 62343410 - Pard3bos3 antisense antisense MGP_C3HHeJ_T0018800.1 MGP_C3HHeJ_G0015633.1 mouse_genomes_project 1 15009288 15049026 + MGP_C3HHeJ_P0018800 Pi15 protein_coding protein_coding MGP_C3HHeJ_T0098611.1 MGP_C3HHeJ_G0036805.1 mouse_genomes_project 1 34004608 34004713 + Gm25634 snRNA snRNA MGP_C3HHeJ_T0022298.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153483840 153524040 - MGP_C3HHeJ_P0022298 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022299.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153484133 153524015 - MGP_C3HHeJ_P0022299 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022300.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153484133 153523722 - MGP_C3HHeJ_P0022300 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022301.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153485052 153523679 - MGP_C3HHeJ_P0022301 BC003331 protein_coding protein_coding MGP_C3HHeJ_T0022302.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153485063 153523703 - MGP_C3HHeJ_P0022302 BC003331 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022303.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153505513 153513049 - BC003331 protein_coding retained_intron MGP_C3HHeJ_T0022304.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153506241 153523897 - BC003331 protein_coding processed_transcript MGP_C3HHeJ_T0022305.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153514855 153523708 - BC003331 protein_coding retained_intron MGP_C3HHeJ_T0022306.1 MGP_C3HHeJ_G0016342.1 mouse_genomes_project 1 153518585 153523707 - BC003331 protein_coding retained_intron MGP_C3HHeJ_T0000518.1 MGP_C3HHeJ_G0000465.1 mouse_genomes_project 1 87386677 87388931 + TEC TEC MGP_C3HHeJ_T0023327.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176573570 176600104 - MGP_C3HHeJ_P0023327 Atp1a2 protein_coding protein_coding MGP_C3HHeJ_T0023328.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176576358 176600104 - Atp1a2 protein_coding retained_intron MGP_C3HHeJ_T0023329.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176577712 176578247 - Atp1a2 protein_coding retained_intron MGP_C3HHeJ_T0023330.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176579866 176600104 - MGP_C3HHeJ_P0023330 Atp1a2 protein_coding protein_coding MGP_C3HHeJ_T0023331.1 MGP_C3HHeJ_G0016548.1 mouse_genomes_project 1 176586296 176600104 - Atp1a2 protein_coding retained_intron MGP_C3HHeJ_T0099914.1 MGP_C3HHeJ_G0038108.1 mouse_genomes_project 1 190399169 190399301 + Snora36b snoRNA snoRNA MGP_C3HHeJ_T0022465.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157190163 157199991 + MGP_C3HHeJ_P0022465 Glul protein_coding protein_coding MGP_C3HHeJ_T0022466.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157190825 157197408 + MGP_C3HHeJ_P0022466 Glul protein_coding protein_coding MGP_C3HHeJ_T0022467.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157191335 157196624 + MGP_C3HHeJ_P0022467 Glul protein_coding protein_coding MGP_C3HHeJ_T0022468.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157194065 157197297 + Glul protein_coding processed_transcript MGP_C3HHeJ_T0022469.1 MGP_C3HHeJ_G0016372.1 mouse_genomes_project 1 157196310 157197384 + Glul protein_coding retained_intron MGP_C3HHeJ_T0023679.1 MGP_C3HHeJ_G0016643.1 mouse_genomes_project 1 186078461 186088545 + MGP_C3HHeJ_P0023679 9130409I23Rik protein_coding protein_coding MGP_C3HHeJ_T0023436.1 MGP_C3HHeJ_G0016593.1 mouse_genomes_project 1 178999424 179007826 + MGP_C3HHeJ_P0023436 Olfr414 protein_coding protein_coding MGP_C3HHeJ_T0023437.1 MGP_C3HHeJ_G0016593.1 mouse_genomes_project 1 179006704 179007659 + MGP_C3HHeJ_P0023437 Olfr414 protein_coding protein_coding MGP_C3HHeJ_T0000412.1 MGP_C3HHeJ_G0000359.1 mouse_genomes_project 1 33041928 33044961 + TEC TEC MGP_C3HHeJ_T0023984.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196947070 196985525 - MGP_C3HHeJ_P0023984 Dtl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023985.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196947079 196985548 - MGP_C3HHeJ_P0023985 Dtl protein_coding protein_coding MGP_C3HHeJ_T0023986.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196948827 196985518 - Dtl protein_coding processed_transcript MGP_C3HHeJ_T0023987.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196959503 196985517 - MGP_C3HHeJ_P0023987 Dtl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023988.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196969557 196985515 - Dtl protein_coding retained_intron MGP_C3HHeJ_T0023989.1 MGP_C3HHeJ_G0016706.1 mouse_genomes_project 1 196980822 196985517 - Dtl protein_coding retained_intron MGP_C3HHeJ_T0009450.1 MGP_C3HHeJ_G0007583.1 mouse_genomes_project 1 154618663 154618721 + Mir7682 miRNA miRNA MGP_C3HHeJ_T0000743.1 MGP_C3HHeJ_G0000687.1 mouse_genomes_project 1 187094166 187095806 - TEC TEC MGP_C3HHeJ_T0012265.1 MGP_C3HHeJ_G0010369.1 mouse_genomes_project 1 196370723 196370928 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098324.1 MGP_C3HHeJ_G0036535.1 mouse_genomes_project 1 133800778 133803180 - Gm29488 sense_intronic sense_intronic MGP_C3HHeJ_T0000366.1 MGP_C3HHeJ_G0000316.1 mouse_genomes_project 1 18720529 18722616 + TEC TEC MGP_C3HHeJ_T0005892.1 MGP_C3HHeJ_G0004928.1 mouse_genomes_project 1 166905705 166907528 - Gm26523 lincRNA lincRNA MGP_C3HHeJ_T0101595.1 MGP_C3HHeJ_G0039561.1 mouse_genomes_project 1 178220110 178222992 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098650.1 MGP_C3HHeJ_G0036844.1 mouse_genomes_project 1 133461662 133461756 - Gm25549 snRNA snRNA MGP_C3HHeJ_T0009381.1 MGP_C3HHeJ_G0007514.1 mouse_genomes_project 1 18143789 18143862 + Mir206 miRNA miRNA MGP_C3HHeJ_T0000594.1 MGP_C3HHeJ_G0000541.1 mouse_genomes_project 1 132852075 132853623 + TEC TEC MGP_C3HHeJ_T0020662.1 MGP_C3HHeJ_G0015987.1 mouse_genomes_project 1 83292848 83304661 - MGP_C3HHeJ_P0020662 Tm4sf20 protein_coding protein_coding MGP_C3HHeJ_T0020663.1 MGP_C3HHeJ_G0015987.1 mouse_genomes_project 1 83293601 83304661 - Tm4sf20 protein_coding processed_transcript MGP_C3HHeJ_T0002852.1 MGP_C3HHeJ_G0002687.1 mouse_genomes_project 1 159170720 159211871 + Gm37571 antisense antisense MGP_C3HHeJ_T0000563.1 MGP_C3HHeJ_G0000510.1 mouse_genomes_project 1 123377244 123380302 + TEC TEC MGP_C3HHeJ_T0002733.1 MGP_C3HHeJ_G0002599.1 mouse_genomes_project 1 42398665 42400600 - Gm29155 antisense antisense MGP_C3HHeJ_T0002734.1 MGP_C3HHeJ_G0002599.1 mouse_genomes_project 1 42400288 42400557 - Gm29155 antisense antisense MGP_C3HHeJ_T0016772.1 MGP_C3HHeJ_G0014859.1 mouse_genomes_project 1 63062246 63069531 + Platr12 processed_transcript antisense MGP_C3HHeJ_T0016773.1 MGP_C3HHeJ_G0014859.1 mouse_genomes_project 1 63062641 63069884 + Platr12 processed_transcript lincRNA MGP_C3HHeJ_T0099845.1 MGP_C3HHeJ_G0038039.1 mouse_genomes_project 1 52332235 52332336 + Gm24349 snoRNA snoRNA MGP_C3HHeJ_T0000322.1 MGP_C3HHeJ_G0000272.1 mouse_genomes_project 1 411548 413781 - TEC TEC MGP_C3HHeJ_T0020377.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450013 75452991 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020378.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450013 75452995 + MGP_C3HHeJ_P0020378 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0020379.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450013 75452118 + MGP_C3HHeJ_P0020379 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0020380.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450022 75452991 + MGP_C3HHeJ_P0020380 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0020381.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450025 75451258 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020382.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450033 75450997 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020383.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450068 75451935 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020384.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450145 75452053 + Zfand2b protein_coding retained_intron MGP_C3HHeJ_T0020385.1 MGP_C3HHeJ_G0015942.1 mouse_genomes_project 1 75450295 75452768 + MGP_C3HHeJ_P0020385 Zfand2b protein_coding protein_coding MGP_C3HHeJ_T0000581.1 MGP_C3HHeJ_G0000528.1 mouse_genomes_project 1 129631046 129631589 + TEC TEC MGP_C3HHeJ_T0002850.1 MGP_C3HHeJ_G0002685.1 mouse_genomes_project 1 157006365 157012139 - Gm28513 antisense antisense MGP_C3HHeJ_T0005890.1 MGP_C3HHeJ_G0004927.1 mouse_genomes_project 1 165472827 165483262 + Gm31925 lincRNA lincRNA MGP_C3HHeJ_T0005891.1 MGP_C3HHeJ_G0004927.1 mouse_genomes_project 1 165474465 165485486 + Gm31925 lincRNA lincRNA MGP_C3HHeJ_T0005766.1 MGP_C3HHeJ_G0004829.1 mouse_genomes_project 1 93429382 93434767 + Gm29099 lincRNA lincRNA MGP_C3HHeJ_T0011954.1 MGP_C3HHeJ_G0010058.1 mouse_genomes_project 1 58271524 58278569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000764.1 MGP_C3HHeJ_G0000707.1 mouse_genomes_project 1 196945598 196946605 - TEC TEC MGP_C3HHeJ_T0022109.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138609278 138636793 + MGP_C3HHeJ_P0022109 Tmem9 protein_coding protein_coding MGP_C3HHeJ_T0022110.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138619984 138637868 + MGP_C3HHeJ_P0022110 Tmem9 protein_coding protein_coding MGP_C3HHeJ_T0022111.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138620079 138636818 + MGP_C3HHeJ_P0022111 Tmem9 protein_coding protein_coding MGP_C3HHeJ_T0022112.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138629519 138636925 + Tmem9 protein_coding retained_intron MGP_C3HHeJ_T0022113.1 MGP_C3HHeJ_G0016302.1 mouse_genomes_project 1 138635779 138637306 + Tmem9 protein_coding processed_transcript MGP_C3HHeJ_T0011874.1 MGP_C3HHeJ_G0009978.1 mouse_genomes_project 1 32831671 32833068 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101549.1 MGP_C3HHeJ_G0039515.1 mouse_genomes_project 1 52649437 52651928 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005663.1 MGP_C3HHeJ_G0004747.1 mouse_genomes_project 1 56703920 56705981 + 1700126A01Rik lincRNA lincRNA MGP_C3HHeJ_T0023712.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186981270 187108147 - MGP_C3HHeJ_P0023712 Enah protein_coding protein_coding MGP_C3HHeJ_T0023713.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186989225 187108476 - MGP_C3HHeJ_P0023713 Enah protein_coding protein_coding MGP_C3HHeJ_T0023714.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186989272 187108466 - MGP_C3HHeJ_P0023714 Enah protein_coding protein_coding MGP_C3HHeJ_T0023715.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186989272 187108466 - MGP_C3HHeJ_P0023715 Enah protein_coding protein_coding MGP_C3HHeJ_T0023716.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990151 186993239 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023717.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990305 186991673 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023718.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990333 187102902 - MGP_C3HHeJ_P0023718 Enah protein_coding protein_coding MGP_C3HHeJ_T0023719.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990340 187108147 - MGP_C3HHeJ_P0023719 Enah protein_coding protein_coding MGP_C3HHeJ_T0023720.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990340 187108147 - MGP_C3HHeJ_P0023720 Enah protein_coding protein_coding MGP_C3HHeJ_T0023721.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990340 187108147 - MGP_C3HHeJ_P0023721 Enah protein_coding protein_coding MGP_C3HHeJ_T0023722.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186990535 187002192 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023723.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 186995542 186997432 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023724.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187004282 187008596 - MGP_C3HHeJ_P0023724 Enah protein_coding protein_coding MGP_C3HHeJ_T0023725.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187008030 187043576 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023726.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187019969 187027003 - Enah protein_coding retained_intron MGP_C3HHeJ_T0023727.1 MGP_C3HHeJ_G0016651.1 mouse_genomes_project 1 187043174 187108162 - Enah protein_coding retained_intron MGP_C3HHeJ_T0022997.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098732 170114276 + MGP_C3HHeJ_P0022997 Tada1 protein_coding protein_coding MGP_C3HHeJ_T0022998.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098952 170109583 + Tada1 protein_coding retained_intron MGP_C3HHeJ_T0022999.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098959 170104805 + Tada1 protein_coding retained_intron MGP_C3HHeJ_T0023000.1 MGP_C3HHeJ_G0016470.1 mouse_genomes_project 1 170098974 170102106 + MGP_C3HHeJ_P0023000 Tada1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023361.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176836990 176841472 + Cfap45 protein_coding retained_intron MGP_C3HHeJ_T0023362.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837233 176862996 + MGP_C3HHeJ_P0023362 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023363.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837325 176849914 + Cfap45 protein_coding retained_intron MGP_C3HHeJ_T0023364.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837328 176849808 + MGP_C3HHeJ_P0023364 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023365.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176837370 176849785 + MGP_C3HHeJ_P0023365 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023366.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176843285 176849868 + MGP_C3HHeJ_P0023366 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023367.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176843646 176849868 + MGP_C3HHeJ_P0023367 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0023368.1 MGP_C3HHeJ_G0016555.1 mouse_genomes_project 1 176854799 176857772 + MGP_C3HHeJ_P0023368 Cfap45 protein_coding protein_coding MGP_C3HHeJ_T0012126.1 MGP_C3HHeJ_G0010230.1 mouse_genomes_project 1 125329352 125329469 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021240.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94879200 94890290 + MGP_C3HHeJ_P0021240 Bok protein_coding protein_coding MGP_C3HHeJ_T0021241.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94879242 94889736 + MGP_C3HHeJ_P0021241 Bok protein_coding protein_coding MGP_C3HHeJ_T0021242.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94879803 94888661 + MGP_C3HHeJ_P0021242 Bok protein_coding protein_coding MGP_C3HHeJ_T0021243.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94883814 94889995 + MGP_C3HHeJ_P0021243 Bok protein_coding protein_coding MGP_C3HHeJ_T0021244.1 MGP_C3HHeJ_G0016112.1 mouse_genomes_project 1 94888406 94889981 + Bok protein_coding processed_transcript MGP_C3HHeJ_T0022793.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164398 166192783 + MGP_C3HHeJ_P0022793 Vamp4 protein_coding protein_coding MGP_C3HHeJ_T0022794.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164510 166175899 + Vamp4 protein_coding retained_intron MGP_C3HHeJ_T0022795.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164522 166192782 + MGP_C3HHeJ_P0022795 Vamp4 protein_coding protein_coding MGP_C3HHeJ_T0022796.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166164711 166192777 + MGP_C3HHeJ_P0022796 Vamp4 protein_coding protein_coding MGP_C3HHeJ_T0022797.1 MGP_C3HHeJ_G0016426.1 mouse_genomes_project 1 166168704 166188459 + Vamp4 protein_coding processed_transcript MGP_C3HHeJ_T0021278.1 MGP_C3HHeJ_G0016120.1 mouse_genomes_project 1 96564351 96586014 + MGP_C3HHeJ_P0021278 Fam174a protein_coding protein_coding MGP_C3HHeJ_T0021279.1 MGP_C3HHeJ_G0016120.1 mouse_genomes_project 1 96564356 96578674 + MGP_C3HHeJ_P0021279 Fam174a protein_coding protein_coding MGP_C3HHeJ_T0020016.1 MGP_C3HHeJ_G0015868.1 mouse_genomes_project 1 64656526 64663722 - MGP_C3HHeJ_P0020016 Fzd5 protein_coding protein_coding MGP_C3HHeJ_T0020017.1 MGP_C3HHeJ_G0015868.1 mouse_genomes_project 1 64660439 64663720 - MGP_C3HHeJ_P0020017 Fzd5 protein_coding protein_coding MGP_C3HHeJ_T0005924.1 MGP_C3HHeJ_G0004956.1 mouse_genomes_project 1 182120485 182129369 + Gm37306 lincRNA lincRNA MGP_C3HHeJ_T0019659.1 MGP_C3HHeJ_G0015806.1 mouse_genomes_project 1 54910361 55276440 + MGP_C3HHeJ_P0019659 Plcl1 protein_coding protein_coding MGP_C3HHeJ_T0019660.1 MGP_C3HHeJ_G0015806.1 mouse_genomes_project 1 55223648 55257296 + Plcl1 protein_coding processed_transcript MGP_C3HHeJ_T0000659.1 MGP_C3HHeJ_G0000604.1 mouse_genomes_project 1 159234096 159234843 - TEC TEC MGP_C3HHeJ_T0020815.1 MGP_C3HHeJ_G0016018.1 mouse_genomes_project 1 87417558 87422892 - MGP_C3HHeJ_P0020815 Nppc protein_coding protein_coding MGP_C3HHeJ_T0012267.1 MGP_C3HHeJ_G0010371.1 mouse_genomes_project 1 196806992 196807574 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023640.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622337 185677002 + MGP_C3HHeJ_P0023640 Lin9 protein_coding protein_coding MGP_C3HHeJ_T0023641.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622521 185677009 + MGP_C3HHeJ_P0023641 Lin9 protein_coding protein_coding MGP_C3HHeJ_T0023642.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622540 185666134 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0023643.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622542 185630381 + Lin9 protein_coding processed_transcript MGP_C3HHeJ_T0023644.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622547 185677002 + MGP_C3HHeJ_P0023644 Lin9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023645.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185622553 185658972 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0023646.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185643586 185658024 + MGP_C3HHeJ_P0023646 Lin9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023647.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185663245 185675192 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0023648.1 MGP_C3HHeJ_G0016633.1 mouse_genomes_project 1 185665394 185677002 + Lin9 protein_coding retained_intron MGP_C3HHeJ_T0019601.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 53922118 54017402 - MGP_C3HHeJ_P0019601 Pgap1 protein_coding protein_coding MGP_C3HHeJ_T0019602.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 53977824 54017404 - Pgap1 protein_coding retained_intron MGP_C3HHeJ_T0019603.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 53980402 53983649 - Pgap1 protein_coding retained_intron MGP_C3HHeJ_T0019604.1 MGP_C3HHeJ_G0015796.1 mouse_genomes_project 1 54014322 54017347 - Pgap1 protein_coding retained_intron MGP_C3HHeJ_T0021408.1 MGP_C3HHeJ_G0016153.1 mouse_genomes_project 1 112713122 112808589 - MGP_C3HHeJ_P0021408 Cdh19 protein_coding protein_coding MGP_C3HHeJ_T0021409.1 MGP_C3HHeJ_G0016153.1 mouse_genomes_project 1 112772926 112808810 - Cdh19 protein_coding processed_transcript MGP_C3HHeJ_T0011779.1 MGP_C3HHeJ_G0009883.1 mouse_genomes_project 1 5893788 5893982 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000576.1 MGP_C3HHeJ_G0000523.1 mouse_genomes_project 1 128118937 128121634 - TEC TEC MGP_C3HHeJ_T0000598.1 MGP_C3HHeJ_G0000545.1 mouse_genomes_project 1 134328825 134330736 + TEC TEC MGP_C3HHeJ_T0005598.1 MGP_C3HHeJ_G0004704.1 mouse_genomes_project 1 31355738 31358440 - Gm37591 lincRNA lincRNA MGP_C3HHeJ_T0098677.1 MGP_C3HHeJ_G0036871.1 mouse_genomes_project 1 183273428 183273534 + Gm24919 snRNA snRNA MGP_C3HHeJ_T0099905.1 MGP_C3HHeJ_G0038099.1 mouse_genomes_project 1 164590557 164590634 + Snord80 snoRNA snoRNA MGP_C3HHeJ_T0020865.1 MGP_C3HHeJ_G0016030.1 mouse_genomes_project 1 88198932 88207284 - MGP_C3HHeJ_P0020865 Kcnj13 protein_coding protein_coding MGP_C3HHeJ_T0020866.1 MGP_C3HHeJ_G0016030.1 mouse_genomes_project 1 88199571 88201959 - MGP_C3HHeJ_P0020866 Kcnj13 protein_coding protein_coding MGP_C3HHeJ_T0098329.1 MGP_C3HHeJ_G0036540.1 mouse_genomes_project 1 155883418 155887876 - Gm15479 sense_intronic sense_intronic MGP_C3HHeJ_T0005902.1 MGP_C3HHeJ_G0004937.1 mouse_genomes_project 1 168614740 168616643 + 1700029M03Rik lincRNA lincRNA MGP_C3HHeJ_T0005903.1 MGP_C3HHeJ_G0004937.1 mouse_genomes_project 1 168614742 168615222 + 1700029M03Rik lincRNA lincRNA MGP_C3HHeJ_T0000744.1 MGP_C3HHeJ_G0000688.1 mouse_genomes_project 1 187522489 187523247 - TEC TEC MGP_C3HHeJ_T0000745.1 MGP_C3HHeJ_G0000688.1 mouse_genomes_project 1 187522844 187523246 - TEC TEC MGP_C3HHeJ_T0023932.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196295474 196318059 + MGP_C3HHeJ_P0023932 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023933.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196309546 + Angel2 protein_coding retained_intron MGP_C3HHeJ_T0023934.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196318059 + MGP_C3HHeJ_P0023934 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023935.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196318059 + MGP_C3HHeJ_P0023935 Angel2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023936.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196298854 196318059 + MGP_C3HHeJ_P0023936 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023937.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299946 196308813 + MGP_C3HHeJ_P0023937 Angel2 protein_coding protein_coding MGP_C3HHeJ_T0023938.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299969 196318059 + Angel2 protein_coding processed_transcript MGP_C3HHeJ_T0023939.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299974 196308588 + MGP_C3HHeJ_P0023939 Angel2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023940.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196299976 196309116 + Angel2 protein_coding retained_intron MGP_C3HHeJ_T0023941.1 MGP_C3HHeJ_G0016694.1 mouse_genomes_project 1 196308362 196310380 + Angel2 protein_coding retained_intron MGP_C3HHeJ_T0020646.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83115063 83172130 + Col4a3 protein_coding retained_intron MGP_C3HHeJ_T0020647.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83115118 83254104 + MGP_C3HHeJ_P0020647 Col4a3 protein_coding protein_coding MGP_C3HHeJ_T0020648.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83247286 83250966 + MGP_C3HHeJ_P0020648 Col4a3 protein_coding protein_coding MGP_C3HHeJ_T0020649.1 MGP_C3HHeJ_G0015985.1 mouse_genomes_project 1 83247286 83250867 + MGP_C3HHeJ_P0020649 Col4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002698.1 MGP_C3HHeJ_G0002571.1 mouse_genomes_project 1 15094236 15142998 - Gm16070 antisense antisense MGP_C3HHeJ_T0002699.1 MGP_C3HHeJ_G0002571.1 mouse_genomes_project 1 15111179 15143360 - Gm16070 antisense antisense MGP_C3HHeJ_T0002700.1 MGP_C3HHeJ_G0002571.1 mouse_genomes_project 1 15140697 15142969 - Gm16070 antisense antisense MGP_C3HHeJ_T0009435.1 MGP_C3HHeJ_G0007568.1 mouse_genomes_project 1 97602283 97602393 + Gm22917 miRNA miRNA MGP_C3HHeJ_T0012228.1 MGP_C3HHeJ_G0010332.1 mouse_genomes_project 1 174803036 174803372 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000522.1 MGP_C3HHeJ_G0000469.1 mouse_genomes_project 1 87637050 87639361 + TEC TEC MGP_C3HHeJ_T0101555.1 MGP_C3HHeJ_G0039521.1 mouse_genomes_project 1 70236685 70236773 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000733.1 MGP_C3HHeJ_G0000677.1 mouse_genomes_project 1 185106136 185108807 - TEC TEC MGP_C3HHeJ_T0009446.1 MGP_C3HHeJ_G0007579.1 mouse_genomes_project 1 137357239 137357329 + Gm22232 miRNA miRNA MGP_C3HHeJ_T0005654.1 MGP_C3HHeJ_G0004741.1 mouse_genomes_project 1 50927104 50928681 - Gm28055 lincRNA lincRNA MGP_C3HHeJ_T0005655.1 MGP_C3HHeJ_G0004741.1 mouse_genomes_project 1 50927905 50972854 - Gm28055 lincRNA lincRNA MGP_C3HHeJ_T0000468.1 MGP_C3HHeJ_G0000415.1 mouse_genomes_project 1 64662210 64666618 + TEC TEC MGP_C3HHeJ_T0005719.1 MGP_C3HHeJ_G0004788.1 mouse_genomes_project 1 76327908 76329993 - Gm29065 lincRNA lincRNA MGP_C3HHeJ_T0098313.1 MGP_C3HHeJ_G0036525.1 mouse_genomes_project 1 51101374 51103873 - Gm28323 sense_intronic sense_intronic MGP_C3HHeJ_T0023966.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196476604 196487201 + Batf3 protein_coding processed_transcript MGP_C3HHeJ_T0023967.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196476637 196487660 + Batf3 protein_coding processed_transcript MGP_C3HHeJ_T0023968.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196477082 196487658 + MGP_C3HHeJ_P0023968 Batf3 protein_coding protein_coding MGP_C3HHeJ_T0023969.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196477140 196487201 + Batf3 protein_coding processed_transcript MGP_C3HHeJ_T0023970.1 MGP_C3HHeJ_G0016700.1 mouse_genomes_project 1 196479215 196487624 + Batf3 protein_coding retained_intron MGP_C3HHeJ_T0021081.1 MGP_C3HHeJ_G0016077.1 mouse_genomes_project 1 92564744 92606488 + MGP_C3HHeJ_P0021081 Traf3ip1 protein_coding protein_coding MGP_C3HHeJ_T0021082.1 MGP_C3HHeJ_G0016077.1 mouse_genomes_project 1 92564791 92607839 + MGP_C3HHeJ_P0021082 Traf3ip1 protein_coding protein_coding MGP_C3HHeJ_T0021083.1 MGP_C3HHeJ_G0016077.1 mouse_genomes_project 1 92591025 92607839 + Traf3ip1 protein_coding retained_intron MGP_C3HHeJ_T0000459.1 MGP_C3HHeJ_G0000406.1 mouse_genomes_project 1 60811985 60814470 + TEC TEC MGP_C3HHeJ_T0009419.1 MGP_C3HHeJ_G0007552.1 mouse_genomes_project 1 77847336 77847452 - Mir6352 miRNA miRNA MGP_C3HHeJ_T0018517.1 MGP_C3HHeJ_G0015585.1 mouse_genomes_project 1 1934179 1975942 + MGP_C3HHeJ_P0018517 Tcea1 protein_coding protein_coding MGP_C3HHeJ_T0018518.1 MGP_C3HHeJ_G0015585.1 mouse_genomes_project 1 1934403 1975946 + MGP_C3HHeJ_P0018518 Tcea1 protein_coding protein_coding MGP_C3HHeJ_T0000779.1 MGP_C3HHeJ_G0000721.1 mouse_genomes_project 1 200544796 200547093 + TEC TEC MGP_C3HHeJ_T0022965.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169579414 169649847 - MGP_C3HHeJ_P0022965 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022966.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169579414 169719680 - MGP_C3HHeJ_P0022966 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022967.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589683 169628227 - MGP_C3HHeJ_P0022967 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022968.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589717 169719620 - MGP_C3HHeJ_P0022968 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022969.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589717 169719624 - MGP_C3HHeJ_P0022969 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022970.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589721 169649847 - MGP_C3HHeJ_P0022970 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022971.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589748 169594421 - MGP_C3HHeJ_P0022971 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022972.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589844 169607063 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022973.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589868 169719631 - MGP_C3HHeJ_P0022973 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022974.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589942 169649799 - MGP_C3HHeJ_P0022974 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022975.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169589998 169646618 - MGP_C3HHeJ_P0022975 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022976.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169594187 169649910 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022977.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169594342 169649838 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022978.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169606061 169719617 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022979.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169626266 169719615 - MGP_C3HHeJ_P0022979 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0022980.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169644563 169719631 - Pou2f1 protein_coding retained_intron MGP_C3HHeJ_T0022981.1 MGP_C3HHeJ_G0016465.1 mouse_genomes_project 1 169646597 169719611 - MGP_C3HHeJ_P0022981 Pou2f1 protein_coding protein_coding MGP_C3HHeJ_T0000749.1 MGP_C3HHeJ_G0000692.1 mouse_genomes_project 1 189559043 189559798 + TEC TEC MGP_C3HHeJ_T0022157.1 MGP_C3HHeJ_G0016312.1 mouse_genomes_project 1 139260030 139265183 + MGP_C3HHeJ_P0022157 Zfp281 protein_coding protein_coding MGP_C3HHeJ_T0022158.1 MGP_C3HHeJ_G0016312.1 mouse_genomes_project 1 139260030 139265183 + MGP_C3HHeJ_P0022158 Zfp281 protein_coding protein_coding MGP_C3HHeJ_T0099827.1 MGP_C3HHeJ_G0038021.1 mouse_genomes_project 1 14927991 14928102 + Gm25166 snoRNA snoRNA MGP_C3HHeJ_T0021659.1 MGP_C3HHeJ_G0016204.1 mouse_genomes_project 1 132953885 133000997 - MGP_C3HHeJ_P0021659 Zp3r protein_coding protein_coding MGP_C3HHeJ_T0021660.1 MGP_C3HHeJ_G0016204.1 mouse_genomes_project 1 132953885 133000997 - MGP_C3HHeJ_P0021660 Zp3r protein_coding protein_coding MGP_C3HHeJ_T0021661.1 MGP_C3HHeJ_G0016204.1 mouse_genomes_project 1 132953888 133000988 - MGP_C3HHeJ_P0021661 Zp3r protein_coding protein_coding MGP_C3HHeJ_T0012095.1 MGP_C3HHeJ_G0010199.1 mouse_genomes_project 1 114015591 114018389 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000757.1 MGP_C3HHeJ_G0000700.1 mouse_genomes_project 1 192447833 192455307 + TEC TEC MGP_C3HHeJ_T0002779.1 MGP_C3HHeJ_G0002631.1 mouse_genomes_project 1 86622083 86626157 - Gm28884 antisense antisense MGP_C3HHeJ_T0020799.1 MGP_C3HHeJ_G0016014.1 mouse_genomes_project 1 87140968 87142602 + MGP_C3HHeJ_P0020799 1700019O17Rik protein_coding protein_coding MGP_C3HHeJ_T0098598.1 MGP_C3HHeJ_G0036792.1 mouse_genomes_project 1 7144498 7144602 - Gm24674 snRNA snRNA MGP_C3HHeJ_T0005664.1 MGP_C3HHeJ_G0004748.1 mouse_genomes_project 1 56780872 56796067 - BC055402 lincRNA lincRNA MGP_C3HHeJ_T0002900.1 MGP_C3HHeJ_G0002726.1 mouse_genomes_project 1 185219821 185237053 + Gm31728 antisense antisense MGP_C3HHeJ_T0019176.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35786453 35893887 - MGP_C3HHeJ_P0019176 Mgat4a protein_coding protein_coding MGP_C3HHeJ_T0019177.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35793930 35898449 - MGP_C3HHeJ_P0019177 Mgat4a protein_coding protein_coding MGP_C3HHeJ_T0019178.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35812428 35846861 - MGP_C3HHeJ_P0019178 Mgat4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019179.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35812431 35846823 - MGP_C3HHeJ_P0019179 Mgat4a protein_coding protein_coding MGP_C3HHeJ_T0019180.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35846453 35849566 - Mgat4a protein_coding retained_intron MGP_C3HHeJ_T0019181.1 MGP_C3HHeJ_G0015710.1 mouse_genomes_project 1 35890702 35893734 - Mgat4a protein_coding retained_intron MGP_C3HHeJ_T0012222.1 MGP_C3HHeJ_G0010326.1 mouse_genomes_project 1 170525048 170525360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005584.1 MGP_C3HHeJ_G0004691.1 mouse_genomes_project 1 18143802 18149069 + Gm28653 lincRNA lincRNA MGP_C3HHeJ_T0022267.1 MGP_C3HHeJ_G0016334.1 mouse_genomes_project 1 147065849 147104504 - MGP_C3HHeJ_P0022267 Rgs13 protein_coding protein_coding MGP_C3HHeJ_T0022268.1 MGP_C3HHeJ_G0016334.1 mouse_genomes_project 1 147065862 147104407 - MGP_C3HHeJ_P0022268 Rgs13 protein_coding protein_coding MGP_C3HHeJ_T0009425.1 MGP_C3HHeJ_G0007558.1 mouse_genomes_project 1 86443213 86443291 + Gm25472 miRNA miRNA MGP_C3HHeJ_T0023341.1 MGP_C3HHeJ_G0016551.1 mouse_genomes_project 1 176681558 176689044 + MGP_C3HHeJ_P0023341 Pigm protein_coding protein_coding MGP_C3HHeJ_T0000695.1 MGP_C3HHeJ_G0000640.1 mouse_genomes_project 1 166709549 166711532 + TEC TEC MGP_C3HHeJ_T0023990.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985639 197034434 + MGP_C3HHeJ_P0023990 Ints7 protein_coding protein_coding MGP_C3HHeJ_T0023991.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985729 197019566 + Ints7 protein_coding retained_intron MGP_C3HHeJ_T0023992.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985744 197032370 + MGP_C3HHeJ_P0023992 Ints7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023993.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985764 197018184 + MGP_C3HHeJ_P0023993 Ints7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023994.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985764 197033492 + MGP_C3HHeJ_P0023994 Ints7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023995.1 MGP_C3HHeJ_G0016707.1 mouse_genomes_project 1 196985778 196993531 + Ints7 protein_coding retained_intron MGP_C3HHeJ_T0101604.1 MGP_C3HHeJ_G0039570.1 mouse_genomes_project 1 182521247 182714898 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011143.1 MGP_C3HHeJ_G0009276.1 mouse_genomes_project 1 7307842 7308082 + Gm26348 misc_RNA misc_RNA MGP_C3HHeJ_T0000625.1 MGP_C3HHeJ_G0000570.1 mouse_genomes_project 1 140878499 140884314 - TEC TEC MGP_C3HHeJ_T0000406.1 MGP_C3HHeJ_G0000353.1 mouse_genomes_project 1 31910006 31910347 + TEC TEC MGP_C3HHeJ_T0000403.1 MGP_C3HHeJ_G0000351.1 mouse_genomes_project 1 31825188 31826077 + TEC TEC MGP_C3HHeJ_T0000404.1 MGP_C3HHeJ_G0000351.1 mouse_genomes_project 1 31825207 31826077 + TEC TEC MGP_C3HHeJ_T0098659.1 MGP_C3HHeJ_G0036853.1 mouse_genomes_project 1 147893551 147893657 - Gm22681 snRNA snRNA MGP_C3HHeJ_T0002869.1 MGP_C3HHeJ_G0002700.1 mouse_genomes_project 1 166581389 166664226 + Gm37273 antisense antisense MGP_C3HHeJ_T0000535.1 MGP_C3HHeJ_G0000482.1 mouse_genomes_project 1 91920510 91921347 - TEC TEC MGP_C3HHeJ_T0002754.1 MGP_C3HHeJ_G0002614.1 mouse_genomes_project 1 61971455 61976370 - Pard3bos2 antisense antisense MGP_C3HHeJ_T0018796.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14549137 14570121 + MGP_C3HHeJ_P0018796 Gdap1 protein_coding protein_coding MGP_C3HHeJ_T0018797.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14549179 14564529 + Gdap1 protein_coding retained_intron MGP_C3HHeJ_T0018798.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14549243 14567481 + MGP_C3HHeJ_P0018798 Gdap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018799.1 MGP_C3HHeJ_G0015632.1 mouse_genomes_project 1 14564154 14567899 + Gdap1 protein_coding retained_intron MGP_C3HHeJ_T0097954.1 MGP_C3HHeJ_G0036166.1 mouse_genomes_project 1 35306414 35306533 + n-R5s210 rRNA rRNA MGP_C3HHeJ_T0012250.1 MGP_C3HHeJ_G0010354.1 mouse_genomes_project 1 187163558 187163975 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022746.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164812073 164823211 - MGP_C3HHeJ_P0022746 Prdx6 protein_coding protein_coding MGP_C3HHeJ_T0022747.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164812999 164823178 - MGP_C3HHeJ_P0022747 Prdx6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022748.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813548 164823161 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022749.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813582 164823158 - MGP_C3HHeJ_P0022749 Prdx6 protein_coding protein_coding MGP_C3HHeJ_T0022750.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813619 164823113 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022751.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164813792 164822546 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022752.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164815606 164823158 - Prdx6 protein_coding processed_transcript MGP_C3HHeJ_T0022753.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164820604 164823154 - Prdx6 protein_coding retained_intron MGP_C3HHeJ_T0022754.1 MGP_C3HHeJ_G0016417.1 mouse_genomes_project 1 164821562 164823154 - Prdx6 protein_coding retained_intron MGP_C3HHeJ_T0020401.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474317 75477041 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020402.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75477491 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020403.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020404.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0020405.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + MGP_C3HHeJ_P0020405 Ankzf1 protein_coding protein_coding MGP_C3HHeJ_T0020406.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474326 75481344 + MGP_C3HHeJ_P0020406 Ankzf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020407.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75474358 75477491 + MGP_C3HHeJ_P0020407 Ankzf1 protein_coding protein_coding MGP_C3HHeJ_T0020408.1 MGP_C3HHeJ_G0015945.1 mouse_genomes_project 1 75477649 75478613 + Ankzf1 protein_coding retained_intron MGP_C3HHeJ_T0021703.1 MGP_C3HHeJ_G0016218.1 mouse_genomes_project 1 133519204 133529983 - MGP_C3HHeJ_P0021703 Dyrk3 protein_coding protein_coding MGP_C3HHeJ_T0021704.1 MGP_C3HHeJ_G0016218.1 mouse_genomes_project 1 133521624 133529888 - MGP_C3HHeJ_P0021704 Dyrk3 protein_coding protein_coding MGP_C3HHeJ_T0018881.1 MGP_C3HHeJ_G0015658.1 mouse_genomes_project 1 21619490 21629974 - MGP_C3HHeJ_P0018881 Sdhaf4 protein_coding protein_coding MGP_C3HHeJ_T0018882.1 MGP_C3HHeJ_G0015658.1 mouse_genomes_project 1 21626497 21629948 - Sdhaf4 protein_coding processed_transcript MGP_C3HHeJ_T0012153.1 MGP_C3HHeJ_G0010257.1 mouse_genomes_project 1 141582869 141583092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018667.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7487566 7876318 - MGP_C3HHeJ_P0018667 Cpa6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018668.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7487573 7876318 - MGP_C3HHeJ_P0018668 Cpa6 protein_coding protein_coding MGP_C3HHeJ_T0018669.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7629621 7636558 - Cpa6 protein_coding retained_intron MGP_C3HHeJ_T0018670.1 MGP_C3HHeJ_G0015607.1 mouse_genomes_project 1 7740214 7876278 - Cpa6 protein_coding processed_transcript MGP_C3HHeJ_T0000604.1 MGP_C3HHeJ_G0000550.1 mouse_genomes_project 1 136275083 136279029 - TEC TEC MGP_C3HHeJ_T0022138.1 MGP_C3HHeJ_G0016308.1 mouse_genomes_project 1 138868178 138869255 - MGP_C3HHeJ_P0022138 Gpr25 protein_coding protein_coding MGP_C3HHeJ_T0023075.1 MGP_C3HHeJ_G0016491.1 mouse_genomes_project 1 174026118 174047600 - MGP_C3HHeJ_P0023075 Uhmk1 protein_coding protein_coding MGP_C3HHeJ_T0023076.1 MGP_C3HHeJ_G0016491.1 mouse_genomes_project 1 174027214 174048106 - MGP_C3HHeJ_P0023076 Uhmk1 protein_coding protein_coding MGP_C3HHeJ_T0099864.1 MGP_C3HHeJ_G0038058.1 mouse_genomes_project 1 87060235 87060315 - Gm24148 snoRNA snoRNA MGP_C3HHeJ_T0011907.1 MGP_C3HHeJ_G0010011.1 mouse_genomes_project 1 44317961 44320092 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002851.1 MGP_C3HHeJ_G0002686.1 mouse_genomes_project 1 158566010 158567866 + Gm37622 antisense antisense MGP_C3HHeJ_T0002831.1 MGP_C3HHeJ_G0002670.1 mouse_genomes_project 1 137719468 137720303 + Gm15445 antisense antisense MGP_C3HHeJ_T0101085.1 MGP_C3HHeJ_G0039276.1 mouse_genomes_project 1 79399068 79399217 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0020031.1 MGP_C3HHeJ_G0015872.1 mouse_genomes_project 1 65002814 65006260 - MGP_C3HHeJ_P0020031 Crygc protein_coding protein_coding MGP_C3HHeJ_T0020032.1 MGP_C3HHeJ_G0015872.1 mouse_genomes_project 1 65002820 65006092 - MGP_C3HHeJ_P0020032 Crygc protein_coding protein_coding MGP_C3HHeJ_T0005684.1 MGP_C3HHeJ_G0004764.1 mouse_genomes_project 1 63129594 63135868 - Gm11608 lincRNA lincRNA MGP_C3HHeJ_T0005685.1 MGP_C3HHeJ_G0004764.1 mouse_genomes_project 1 63129594 63135863 - Gm11608 lincRNA lincRNA MGP_C3HHeJ_T0098603.1 MGP_C3HHeJ_G0036797.1 mouse_genomes_project 1 23138602 23138706 + Gm25294 snRNA snRNA MGP_C3HHeJ_T0098684.1 MGP_C3HHeJ_G0036878.1 mouse_genomes_project 1 197195219 197195333 - Gm26203 snRNA snRNA MGP_C3HHeJ_T0011842.1 MGP_C3HHeJ_G0009946.1 mouse_genomes_project 1 25826286 25828159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023036.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171910915 172234807 - MGP_C3HHeJ_P0023036 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023037.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171947363 172234592 - MGP_C3HHeJ_P0023037 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023038.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171952153 172234445 - MGP_C3HHeJ_P0023038 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023039.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171952193 171958486 - Pbx1 protein_coding processed_transcript MGP_C3HHeJ_T0023040.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171952555 172233229 - MGP_C3HHeJ_P0023040 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023041.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 171977404 172234638 - MGP_C3HHeJ_P0023041 Pbx1 protein_coding protein_coding MGP_C3HHeJ_T0023042.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 172002243 172233385 - Pbx1 protein_coding retained_intron MGP_C3HHeJ_T0023043.1 MGP_C3HHeJ_G0016483.1 mouse_genomes_project 1 172226155 172234638 - Pbx1 protein_coding retained_intron MGP_C3HHeJ_T0098604.1 MGP_C3HHeJ_G0036798.1 mouse_genomes_project 1 29713754 29713861 - Gm23032 snRNA snRNA MGP_C3HHeJ_T0012134.1 MGP_C3HHeJ_G0010238.1 mouse_genomes_project 1 130367900 130368380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098336.1 MGP_C3HHeJ_G0036547.1 mouse_genomes_project 1 188532849 188536464 + sense_intronic sense_intronic MGP_C3HHeJ_T0002778.1 MGP_C3HHeJ_G0002630.1 mouse_genomes_project 1 82916803 82919640 - antisense antisense MGP_C3HHeJ_T0020033.1 MGP_C3HHeJ_G0015873.1 mouse_genomes_project 1 65013718 65015788 - MGP_C3HHeJ_P0020033 Crygb protein_coding protein_coding MGP_C3HHeJ_T0019127.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35053401 35080277 + MGP_C3HHeJ_P0019127 Zap70 protein_coding protein_coding MGP_C3HHeJ_T0019128.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35058536 35062642 + MGP_C3HHeJ_P0019128 Zap70 protein_coding protein_coding MGP_C3HHeJ_T0019129.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35062566 35063950 + Zap70 protein_coding retained_intron MGP_C3HHeJ_T0019130.1 MGP_C3HHeJ_G0015703.1 mouse_genomes_project 1 35070523 35080274 + Zap70 protein_coding retained_intron MGP_C3HHeJ_T0002773.1 MGP_C3HHeJ_G0002626.1 mouse_genomes_project 1 75560491 75563541 + Gm28902 antisense antisense MGP_C3HHeJ_T0005733.1 MGP_C3HHeJ_G0004799.1 mouse_genomes_project 1 80659983 80664421 + 2310015K22Rik lincRNA lincRNA MGP_C3HHeJ_T0022392.1 MGP_C3HHeJ_G0016357.1 mouse_genomes_project 1 155971647 155980734 + MGP_C3HHeJ_P0022392 Arpc5 protein_coding protein_coding MGP_C3HHeJ_T0022393.1 MGP_C3HHeJ_G0016357.1 mouse_genomes_project 1 155971647 155980734 + MGP_C3HHeJ_P0022393 Arpc5 protein_coding protein_coding MGP_C3HHeJ_T0022394.1 MGP_C3HHeJ_G0016357.1 mouse_genomes_project 1 155973635 155979532 + Arpc5 protein_coding retained_intron MGP_C3HHeJ_T0098675.1 MGP_C3HHeJ_G0036869.1 mouse_genomes_project 1 180500255 180500362 + Gm23805 snRNA snRNA MGP_C3HHeJ_T0000705.1 MGP_C3HHeJ_G0000650.1 mouse_genomes_project 1 170165201 170166107 - TEC TEC MGP_C3HHeJ_T0000698.1 MGP_C3HHeJ_G0000643.1 mouse_genomes_project 1 168226479 168229569 + TEC TEC MGP_C3HHeJ_T0101543.1 MGP_C3HHeJ_G0039509.1 mouse_genomes_project 1 18760282 18761178 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005830.1 MGP_C3HHeJ_G0004880.1 mouse_genomes_project 1 134781927 134789222 + F730311O21Rik lincRNA lincRNA MGP_C3HHeJ_T0005769.1 MGP_C3HHeJ_G0004832.1 mouse_genomes_project 1 93917178 93919714 - lincRNA lincRNA MGP_C3HHeJ_T0002935.1 MGP_C3HHeJ_G0002752.1 mouse_genomes_project 1 197520220 197535657 + Gm10516 antisense antisense MGP_C3HHeJ_T0002936.1 MGP_C3HHeJ_G0002752.1 mouse_genomes_project 1 197520664 197528599 + Gm10516 antisense antisense MGP_C3HHeJ_T0005589.1 MGP_C3HHeJ_G0004696.1 mouse_genomes_project 1 20882322 20882666 + Gm29107 lincRNA lincRNA MGP_C3HHeJ_T0023129.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175061446 175072955 + MGP_C3HHeJ_P0023129 Mpz protein_coding protein_coding MGP_C3HHeJ_T0023130.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175066243 175071229 + MGP_C3HHeJ_P0023130 Mpz protein_coding protein_coding MGP_C3HHeJ_T0023131.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175070315 175070952 + Mpz protein_coding processed_transcript MGP_C3HHeJ_T0023132.1 MGP_C3HHeJ_G0016507.1 mouse_genomes_project 1 175070424 175070967 + Mpz protein_coding processed_transcript MGP_C3HHeJ_T0023283.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176365480 176382301 - MGP_C3HHeJ_P0023283 Ncstn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023284.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176365480 176382301 - MGP_C3HHeJ_P0023284 Ncstn protein_coding protein_coding MGP_C3HHeJ_T0023285.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176365480 176382301 - MGP_C3HHeJ_P0023285 Ncstn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023286.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176366168 176367533 - Ncstn protein_coding retained_intron MGP_C3HHeJ_T0023287.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176367338 176370734 - Ncstn protein_coding retained_intron MGP_C3HHeJ_T0023288.1 MGP_C3HHeJ_G0016540.1 mouse_genomes_project 1 176380194 176382301 - Ncstn protein_coding retained_intron MGP_C3HHeJ_T0021990.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089571 137172478 + MGP_C3HHeJ_P0021990 Kdm5b protein_coding protein_coding MGP_C3HHeJ_T0021991.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089592 137168748 + MGP_C3HHeJ_P0021991 Kdm5b protein_coding protein_coding MGP_C3HHeJ_T0021992.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089607 137143989 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021993.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137089739 137170106 + MGP_C3HHeJ_P0021993 Kdm5b protein_coding unknown_likely_coding MGP_C3HHeJ_T0021994.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137122145 137124859 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021995.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137159095 137162317 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021996.1 MGP_C3HHeJ_G0016280.1 mouse_genomes_project 1 137160014 137164417 + Kdm5b protein_coding retained_intron MGP_C3HHeJ_T0021326.1 MGP_C3HHeJ_G0016132.1 mouse_genomes_project 1 106891085 106980066 - MGP_C3HHeJ_P0021326 Rnf152 protein_coding protein_coding MGP_C3HHeJ_T0021327.1 MGP_C3HHeJ_G0016132.1 mouse_genomes_project 1 106891088 106980104 - MGP_C3HHeJ_P0021327 Rnf152 protein_coding protein_coding MGP_C3HHeJ_T0002822.1 MGP_C3HHeJ_G0002665.1 mouse_genomes_project 1 135511069 135529408 - Gm28609 antisense antisense MGP_C3HHeJ_T0000761.1 MGP_C3HHeJ_G0000704.1 mouse_genomes_project 1 194934521 194935406 - TEC TEC MGP_C3HHeJ_T0000560.1 MGP_C3HHeJ_G0000507.1 mouse_genomes_project 1 121810251 121818414 - TEC TEC MGP_C3HHeJ_T0012112.1 MGP_C3HHeJ_G0010216.1 mouse_genomes_project 1 121522323 121522716 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019259.1 MGP_C3HHeJ_G0015726.1 mouse_genomes_project 1 37600963 37698017 + MGP_C3HHeJ_P0019259 Npas2 protein_coding protein_coding MGP_C3HHeJ_T0019260.1 MGP_C3HHeJ_G0015726.1 mouse_genomes_project 1 37601444 37780246 + MGP_C3HHeJ_P0019260 Npas2 protein_coding protein_coding MGP_C3HHeJ_T0019261.1 MGP_C3HHeJ_G0015726.1 mouse_genomes_project 1 37757351 37761474 + Npas2 protein_coding processed_transcript MGP_C3HHeJ_T0011981.1 MGP_C3HHeJ_G0010085.1 mouse_genomes_project 1 63251449 63252029 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009462.1 MGP_C3HHeJ_G0007595.1 mouse_genomes_project 1 172295836 172295956 + Mir6348 miRNA miRNA MGP_C3HHeJ_T0000424.1 MGP_C3HHeJ_G0000371.1 mouse_genomes_project 1 37844287 37845172 - TEC TEC MGP_C3HHeJ_T0000369.1 MGP_C3HHeJ_G0000319.1 mouse_genomes_project 1 20842344 20843067 - TEC TEC MGP_C3HHeJ_T0000370.1 MGP_C3HHeJ_G0000319.1 mouse_genomes_project 1 20842646 20843066 - TEC TEC MGP_C3HHeJ_T0005838.1 MGP_C3HHeJ_G0004888.1 mouse_genomes_project 1 138861151 138864330 - Gm37552 lincRNA lincRNA MGP_C3HHeJ_T0000674.1 MGP_C3HHeJ_G0000619.1 mouse_genomes_project 1 161977565 161980652 - TEC TEC MGP_C3HHeJ_T0099873.1 MGP_C3HHeJ_G0038067.1 mouse_genomes_project 1 104797549 104797691 - Gm23965 snoRNA snoRNA MGP_C3HHeJ_T0012088.1 MGP_C3HHeJ_G0010192.1 mouse_genomes_project 1 111408002 111408189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022280.1 MGP_C3HHeJ_G0016337.1 mouse_genomes_project 1 147691447 147714829 - MGP_C3HHeJ_P0022280 Rgs18 protein_coding protein_coding MGP_C3HHeJ_T0011863.1 MGP_C3HHeJ_G0009967.1 mouse_genomes_project 1 31374199 31375892 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000739.1 MGP_C3HHeJ_G0000683.1 mouse_genomes_project 1 186756377 186760190 - TEC TEC MGP_C3HHeJ_T0005881.1 MGP_C3HHeJ_G0004921.1 mouse_genomes_project 1 162403396 162416146 - 1600012P17Rik lincRNA lincRNA MGP_C3HHeJ_T0005882.1 MGP_C3HHeJ_G0004921.1 mouse_genomes_project 1 162405303 162415754 - 1600012P17Rik lincRNA lincRNA MGP_C3HHeJ_T0098592.1 MGP_C3HHeJ_G0036786.1 mouse_genomes_project 1 147659 147769 + Gm26206 snRNA snRNA MGP_C3HHeJ_T0000771.1 MGP_C3HHeJ_G0000713.1 mouse_genomes_project 1 198797645 198798273 + TEC TEC MGP_C3HHeJ_T0019237.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36550504 37019433 - MGP_C3HHeJ_P0019237 Aff3 protein_coding protein_coding MGP_C3HHeJ_T0019238.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36550505 37057475 - MGP_C3HHeJ_P0019238 Aff3 protein_coding protein_coding MGP_C3HHeJ_T0019239.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36552633 37019389 - MGP_C3HHeJ_P0019239 Aff3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019240.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36554475 36570781 - Aff3 protein_coding processed_transcript MGP_C3HHeJ_T0019241.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36717367 37057475 - Aff3 protein_coding processed_transcript MGP_C3HHeJ_T0019242.1 MGP_C3HHeJ_G0015721.1 mouse_genomes_project 1 36925110 37057475 - MGP_C3HHeJ_P0019242 Aff3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101562.1 MGP_C3HHeJ_G0039528.1 mouse_genomes_project 1 89048149 89048399 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099833.1 MGP_C3HHeJ_G0038027.1 mouse_genomes_project 1 22188009 22188146 - Gm26418 snoRNA snoRNA MGP_C3HHeJ_T0002819.1 MGP_C3HHeJ_G0002662.1 mouse_genomes_project 1 134569942 134573239 + Gm29629 antisense antisense MGP_C3HHeJ_T0019037.1 MGP_C3HHeJ_G0015688.1 mouse_genomes_project 1 34316725 34357738 + MGP_C3HHeJ_P0019037 Hs6st1 protein_coding protein_coding MGP_C3HHeJ_T0019038.1 MGP_C3HHeJ_G0015688.1 mouse_genomes_project 1 34352014 34356268 + Hs6st1 protein_coding retained_intron MGP_C3HHeJ_T0000555.1 MGP_C3HHeJ_G0000502.1 mouse_genomes_project 1 110196925 110199174 + TEC TEC MGP_C3HHeJ_T0012197.1 MGP_C3HHeJ_G0010301.1 mouse_genomes_project 1 159545764 159545964 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005597.1 MGP_C3HHeJ_G0004703.1 mouse_genomes_project 1 29059265 29061814 + Gm28644 lincRNA lincRNA MGP_C3HHeJ_T0012139.1 MGP_C3HHeJ_G0010243.1 mouse_genomes_project 1 133615231 133616444 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021196.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94482123 94490758 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021197.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94482131 94516134 - MGP_C3HHeJ_P0021197 Pask protein_coding protein_coding MGP_C3HHeJ_T0021198.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94483191 94486503 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021199.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94483438 94484698 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021200.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94491172 94516810 - Pask protein_coding retained_intron MGP_C3HHeJ_T0021201.1 MGP_C3HHeJ_G0016105.1 mouse_genomes_project 1 94510787 94516827 - MGP_C3HHeJ_P0021201 Pask protein_coding protein_coding MGP_C3HHeJ_T0021696.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316713 133324169 - MGP_C3HHeJ_P0021696 Il19 protein_coding protein_coding MGP_C3HHeJ_T0021697.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316715 133323309 - MGP_C3HHeJ_P0021697 Il19 protein_coding protein_coding MGP_C3HHeJ_T0021698.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316873 133324183 - MGP_C3HHeJ_P0021698 Il19 protein_coding protein_coding MGP_C3HHeJ_T0021699.1 MGP_C3HHeJ_G0016215.1 mouse_genomes_project 1 133316915 133324141 - MGP_C3HHeJ_P0021699 Il19 protein_coding protein_coding MGP_C3HHeJ_T0012130.1 MGP_C3HHeJ_G0010234.1 mouse_genomes_project 1 125978298 125979180 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002748.1 MGP_C3HHeJ_G0002610.1 mouse_genomes_project 1 58889326 58906607 + Gm29017 antisense antisense MGP_C3HHeJ_T0022145.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139031491 139034013 + Ddx59 protein_coding retained_intron MGP_C3HHeJ_T0022146.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139031491 139063976 + MGP_C3HHeJ_P0022146 Ddx59 protein_coding protein_coding MGP_C3HHeJ_T0022147.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139054000 139056243 + Ddx59 protein_coding processed_transcript MGP_C3HHeJ_T0022148.1 MGP_C3HHeJ_G0016310.1 mouse_genomes_project 1 139056219 139057884 + Ddx59 protein_coding retained_intron MGP_C3HHeJ_T0000586.1 MGP_C3HHeJ_G0000533.1 mouse_genomes_project 1 130402368 130403683 + TEC TEC MGP_C3HHeJ_T0012082.1 MGP_C3HHeJ_G0010186.1 mouse_genomes_project 1 109724077 109724676 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000475.1 MGP_C3HHeJ_G0000422.1 mouse_genomes_project 1 66806910 66811613 - TEC TEC MGP_C3HHeJ_T0019493.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359020 51396036 + MGP_C3HHeJ_P0019493 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019494.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359035 51402478 + MGP_C3HHeJ_P0019494 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019495.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359070 51396036 + MGP_C3HHeJ_P0019495 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019496.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359072 51401620 + MGP_C3HHeJ_P0019496 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019497.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359078 51373261 + MGP_C3HHeJ_P0019497 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019498.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359129 51395955 + MGP_C3HHeJ_P0019498 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019499.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359139 51359975 + Stat1 protein_coding retained_intron MGP_C3HHeJ_T0019500.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359152 51378480 + Stat1 protein_coding retained_intron MGP_C3HHeJ_T0019501.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51359204 51401343 + MGP_C3HHeJ_P0019501 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019502.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51390731 51393027 + Stat1 protein_coding retained_intron MGP_C3HHeJ_T0019503.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51390885 51402476 + MGP_C3HHeJ_P0019503 Stat1 protein_coding protein_coding MGP_C3HHeJ_T0019504.1 MGP_C3HHeJ_G0015777.1 mouse_genomes_project 1 51392880 51400173 + MGP_C3HHeJ_P0019504 Stat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011987.1 MGP_C3HHeJ_G0010091.1 mouse_genomes_project 1 64957944 64958597 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005643.1 MGP_C3HHeJ_G0004732.1 mouse_genomes_project 1 45951288 45952236 - Gm28151 lincRNA lincRNA MGP_C3HHeJ_T0012244.1 MGP_C3HHeJ_G0010348.1 mouse_genomes_project 1 185710955 185711433 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099879.1 MGP_C3HHeJ_G0038073.1 mouse_genomes_project 1 120446512 120446643 - Gm26080 snoRNA snoRNA MGP_C3HHeJ_T0101565.1 MGP_C3HHeJ_G0039531.1 mouse_genomes_project 1 89085631 89086489 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011898.1 MGP_C3HHeJ_G0010002.1 mouse_genomes_project 1 42887060 42894773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000344.1 MGP_C3HHeJ_G0000294.1 mouse_genomes_project 1 8514256 8517307 - TEC TEC MGP_C3HHeJ_T0020219.1 MGP_C3HHeJ_G0015909.1 mouse_genomes_project 1 74421212 74447055 + MGP_C3HHeJ_P0020219 Rufy4 protein_coding protein_coding MGP_C3HHeJ_T0020220.1 MGP_C3HHeJ_G0015909.1 mouse_genomes_project 1 74421250 74446605 + MGP_C3HHeJ_P0020220 Rufy4 protein_coding protein_coding MGP_C3HHeJ_T0023423.1 MGP_C3HHeJ_G0016582.1 mouse_genomes_project 1 178628609 178629548 + MGP_C3HHeJ_P0023423 Olfr432 protein_coding protein_coding MGP_C3HHeJ_T0016778.1 MGP_C3HHeJ_G0014862.1 mouse_genomes_project 1 75453096 75467324 - Gm29253 processed_transcript processed_transcript MGP_C3HHeJ_T0002731.1 MGP_C3HHeJ_G0002597.1 mouse_genomes_project 1 41675295 41676163 + Gm28782 antisense antisense MGP_C3HHeJ_T0020983.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91059515 91173704 - MGP_C3HHeJ_P0020983 Iqca protein_coding protein_coding MGP_C3HHeJ_T0020984.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91059518 91108920 - Iqca protein_coding processed_transcript MGP_C3HHeJ_T0020985.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91060009 91173478 - MGP_C3HHeJ_P0020985 Iqca protein_coding unknown_likely_coding MGP_C3HHeJ_T0020986.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91076593 91085006 - MGP_C3HHeJ_P0020986 Iqca protein_coding protein_coding MGP_C3HHeJ_T0020987.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91101111 91108920 - Iqca protein_coding processed_transcript MGP_C3HHeJ_T0020988.1 MGP_C3HHeJ_G0016059.1 mouse_genomes_project 1 91146763 91173704 - Iqca protein_coding processed_transcript MGP_C3HHeJ_T0011167.1 MGP_C3HHeJ_G0009300.1 mouse_genomes_project 1 195835050 195835363 - Gm23153 misc_RNA misc_RNA MGP_C3HHeJ_T0000492.1 MGP_C3HHeJ_G0000439.1 mouse_genomes_project 1 77484558 77488335 - TEC TEC MGP_C3HHeJ_T0005727.1 MGP_C3HHeJ_G0004795.1 mouse_genomes_project 1 79024311 79028968 + Gm29611 lincRNA lincRNA MGP_C3HHeJ_T0000655.1 MGP_C3HHeJ_G0000600.1 mouse_genomes_project 1 156691331 156692151 + TEC TEC MGP_C3HHeJ_T0099884.1 MGP_C3HHeJ_G0038078.1 mouse_genomes_project 1 135271780 135271901 - Gm22609 snoRNA snoRNA MGP_C3HHeJ_T0024093.1 MGP_C3HHeJ_G0016724.1 mouse_genomes_project 1 198695826 198696887 - MGP_C3HHeJ_P0024093 G0s2 protein_coding protein_coding MGP_C3HHeJ_T0000320.1 MGP_C3HHeJ_G0000270.1 mouse_genomes_project 1 112363 113433 + TEC TEC MGP_C3HHeJ_T0005889.1 MGP_C3HHeJ_G0004926.1 mouse_genomes_project 1 164386812 164387276 + Gm38060 lincRNA lincRNA MGP_C3HHeJ_T0023440.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179074764 179414964 + MGP_C3HHeJ_P0023440 Fmn2 protein_coding protein_coding MGP_C3HHeJ_T0023441.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179111211 179158904 + Fmn2 protein_coding processed_transcript MGP_C3HHeJ_T0023442.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179191263 179197762 + Fmn2 protein_coding processed_transcript MGP_C3HHeJ_T0023443.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179191264 179281932 + MGP_C3HHeJ_P0023443 Fmn2 protein_coding protein_coding MGP_C3HHeJ_T0023444.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179194016 179287802 + Fmn2 protein_coding retained_intron MGP_C3HHeJ_T0023445.1 MGP_C3HHeJ_G0016595.1 mouse_genomes_project 1 179296252 179413503 + Fmn2 protein_coding processed_transcript MGP_C3HHeJ_T0000428.1 MGP_C3HHeJ_G0000375.1 mouse_genomes_project 1 41085117 41088966 + TEC TEC MGP_C3HHeJ_T0020937.1 MGP_C3HHeJ_G0016040.1 mouse_genomes_project 1 88942344 89122337 + MGP_C3HHeJ_P0020937 Ugt1a9 protein_coding protein_coding MGP_C3HHeJ_T0019262.1 MGP_C3HHeJ_G0015727.1 mouse_genomes_project 1 37788217 37791695 + MGP_C3HHeJ_P0019262 Rpl31 protein_coding protein_coding MGP_C3HHeJ_T0019263.1 MGP_C3HHeJ_G0015727.1 mouse_genomes_project 1 37788488 37791662 + MGP_C3HHeJ_P0019263 Rpl31 protein_coding protein_coding MGP_C3HHeJ_T0019264.1 MGP_C3HHeJ_G0015727.1 mouse_genomes_project 1 37790177 37791695 + Rpl31 protein_coding retained_intron MGP_C3HHeJ_T0005691.1 MGP_C3HHeJ_G0004770.1 mouse_genomes_project 1 67243341 67338329 + Gm15668 lincRNA lincRNA MGP_C3HHeJ_T0101341.1 MGP_C3HHeJ_G0039417.1 mouse_genomes_project 1 177818018 177822630 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0023549.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183854316 184444759 - MGP_C3HHeJ_P0023549 Smyd3 protein_coding protein_coding MGP_C3HHeJ_T0023550.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183857402 184164017 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023551.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183857507 184295154 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023552.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 183860735 183893732 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023553.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 184299414 184328187 - Smyd3 protein_coding processed_transcript MGP_C3HHeJ_T0023554.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 184316969 184444766 - MGP_C3HHeJ_P0023554 Smyd3 protein_coding protein_coding MGP_C3HHeJ_T0023555.1 MGP_C3HHeJ_G0016619.1 mouse_genomes_project 1 184433309 184444730 - MGP_C3HHeJ_P0023555 Smyd3 protein_coding protein_coding MGP_C3HHeJ_T0099857.1 MGP_C3HHeJ_G0038051.1 mouse_genomes_project 1 66283266 66283403 + Gm24729 snoRNA snoRNA MGP_C3HHeJ_T0023357.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176815431 176822223 + Tagln2 protein_coding retained_intron MGP_C3HHeJ_T0023358.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176815431 176823667 + MGP_C3HHeJ_P0023358 Tagln2 protein_coding protein_coding MGP_C3HHeJ_T0023359.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176815629 176822141 + MGP_C3HHeJ_P0023359 Tagln2 protein_coding protein_coding MGP_C3HHeJ_T0023360.1 MGP_C3HHeJ_G0016554.1 mouse_genomes_project 1 176816653 176823042 + MGP_C3HHeJ_P0023360 Tagln2 protein_coding protein_coding MGP_C3HHeJ_T0019788.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58642220 58681996 - MGP_C3HHeJ_P0019788 Trak2 protein_coding protein_coding MGP_C3HHeJ_T0019789.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58645425 58648897 - Trak2 protein_coding retained_intron MGP_C3HHeJ_T0019790.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58661586 58663388 - Trak2 protein_coding processed_transcript MGP_C3HHeJ_T0019791.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58667631 58709087 - MGP_C3HHeJ_P0019791 Trak2 protein_coding protein_coding MGP_C3HHeJ_T0019792.1 MGP_C3HHeJ_G0015829.1 mouse_genomes_project 1 58681560 58709088 - Trak2 protein_coding retained_intron MGP_C3HHeJ_T0012076.1 MGP_C3HHeJ_G0010180.1 mouse_genomes_project 1 107211413 107211674 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002905.1 MGP_C3HHeJ_G0002730.1 mouse_genomes_project 1 187599266 187608260 + Gm37885 antisense antisense MGP_C3HHeJ_T0002906.1 MGP_C3HHeJ_G0002730.1 mouse_genomes_project 1 187605815 187607388 + Gm37885 antisense antisense MGP_C3HHeJ_T0020194.1 MGP_C3HHeJ_G0015906.1 mouse_genomes_project 1 73117884 73136568 - MGP_C3HHeJ_P0020194 Igfbp5 protein_coding protein_coding MGP_C3HHeJ_T0020195.1 MGP_C3HHeJ_G0015906.1 mouse_genomes_project 1 73118017 73135946 - Igfbp5 protein_coding processed_transcript MGP_C3HHeJ_T0098565.1 MGP_C3HHeJ_G0036764.1 mouse_genomes_project 1 20629397 20821665 - Gm29506 sense_overlapping sense_overlapping MGP_C3HHeJ_T0000408.1 MGP_C3HHeJ_G0000355.1 mouse_genomes_project 1 32096146 32098528 + TEC TEC MGP_C3HHeJ_T0009423.1 MGP_C3HHeJ_G0007556.1 mouse_genomes_project 1 85300101 85300178 + Mir5126 miRNA miRNA MGP_C3HHeJ_T0005586.1 MGP_C3HHeJ_G0004693.1 mouse_genomes_project 1 18360666 18362496 - 6720483E21Rik lincRNA lincRNA MGP_C3HHeJ_T0000765.1 MGP_C3HHeJ_G0000708.1 mouse_genomes_project 1 197006529 197007158 + TEC TEC MGP_C3HHeJ_T0018813.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16685453 16716907 + MGP_C3HHeJ_P0018813 Tfap2b protein_coding protein_coding MGP_C3HHeJ_T0018814.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16685489 16716414 + MGP_C3HHeJ_P0018814 Tfap2b protein_coding protein_coding MGP_C3HHeJ_T0018815.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16688552 16712958 + MGP_C3HHeJ_P0018815 Tfap2b protein_coding protein_coding MGP_C3HHeJ_T0018816.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16688796 16690868 + Tfap2b protein_coding retained_intron MGP_C3HHeJ_T0018817.1 MGP_C3HHeJ_G0015639.1 mouse_genomes_project 1 16690304 16695687 + Tfap2b protein_coding retained_intron MGP_C3HHeJ_T0012040.1 MGP_C3HHeJ_G0010144.1 mouse_genomes_project 1 89922735 89923990 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005842.1 MGP_C3HHeJ_G0004892.1 mouse_genomes_project 1 139257227 139259780 - Platr23 lincRNA lincRNA MGP_C3HHeJ_T0098331.1 MGP_C3HHeJ_G0036542.1 mouse_genomes_project 1 156086922 156088701 - Gm28791 sense_intronic sense_intronic MGP_C3HHeJ_T0000568.1 MGP_C3HHeJ_G0000515.1 mouse_genomes_project 1 125519165 125522173 - TEC TEC MGP_C3HHeJ_T0019681.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368228 57483677 + MGP_C3HHeJ_P0019681 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019682.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368315 57477632 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019683.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368367 57500018 + MGP_C3HHeJ_P0019683 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019684.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368485 57394499 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019685.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368666 57483745 + MGP_C3HHeJ_P0019685 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019686.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368810 57535917 + MGP_C3HHeJ_P0019686 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019687.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368956 57455146 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019688.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368978 57427943 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019689.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57368983 57393641 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0019690.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57391732 57544355 + MGP_C3HHeJ_P0019690 Spats2l protein_coding protein_coding MGP_C3HHeJ_T0019691.1 MGP_C3HHeJ_G0015812.1 mouse_genomes_project 1 57499979 57538270 + Spats2l protein_coding retained_intron MGP_C3HHeJ_T0021736.1 MGP_C3HHeJ_G0016224.1 mouse_genomes_project 1 133999554 134014260 + MGP_C3HHeJ_P0021736 Avpr1b protein_coding protein_coding MGP_C3HHeJ_T0021737.1 MGP_C3HHeJ_G0016224.1 mouse_genomes_project 1 134000038 134012014 + MGP_C3HHeJ_P0021737 Avpr1b protein_coding protein_coding MGP_C3HHeJ_T0098673.1 MGP_C3HHeJ_G0036867.1 mouse_genomes_project 1 177174517 177174614 - Gm24817 snRNA snRNA MGP_C3HHeJ_T0101577.1 MGP_C3HHeJ_G0039543.1 mouse_genomes_project 1 108717036 108722226 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002689.1 MGP_C3HHeJ_G0002565.1 mouse_genomes_project 1 10616978 10627384 + Gm29570 antisense antisense MGP_C3HHeJ_T0021028.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92204988 92207658 + Rbm44 protein_coding retained_intron MGP_C3HHeJ_T0021029.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92205000 92212622 + MGP_C3HHeJ_P0021029 Rbm44 protein_coding protein_coding MGP_C3HHeJ_T0021030.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92205002 92231568 + MGP_C3HHeJ_P0021030 Rbm44 protein_coding protein_coding MGP_C3HHeJ_T0021031.1 MGP_C3HHeJ_G0016067.1 mouse_genomes_project 1 92229401 92231066 + Rbm44 protein_coding retained_intron MGP_C3HHeJ_T0023697.1 MGP_C3HHeJ_G0016647.1 mouse_genomes_project 1 186401826 186515030 + MGP_C3HHeJ_P0023697 Cnih3 protein_coding protein_coding MGP_C3HHeJ_T0023698.1 MGP_C3HHeJ_G0016647.1 mouse_genomes_project 1 186401828 186515762 + MGP_C3HHeJ_P0023698 Cnih3 protein_coding protein_coding MGP_C3HHeJ_T0023699.1 MGP_C3HHeJ_G0016647.1 mouse_genomes_project 1 186402396 186514408 + MGP_C3HHeJ_P0023699 Cnih3 protein_coding protein_coding MGP_C3HHeJ_T0019419.1 MGP_C3HHeJ_G0015761.1 mouse_genomes_project 1 42878947 42900530 - MGP_C3HHeJ_P0019419 Mettl21e protein_coding protein_coding MGP_C3HHeJ_T0019420.1 MGP_C3HHeJ_G0015761.1 mouse_genomes_project 1 42881322 42900482 - Mettl21e protein_coding retained_intron MGP_C3HHeJ_T0009396.1 MGP_C3HHeJ_G0007529.1 mouse_genomes_project 1 41655929 41656014 + Gm24001 miRNA miRNA MGP_C3HHeJ_T0020804.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281305 87323233 - Pde6d protein_coding retained_intron MGP_C3HHeJ_T0020805.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281305 87323233 - MGP_C3HHeJ_P0020805 Pde6d protein_coding protein_coding MGP_C3HHeJ_T0020806.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281333 87323315 - MGP_C3HHeJ_P0020806 Pde6d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020807.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87281831 87323203 - Pde6d protein_coding processed_transcript MGP_C3HHeJ_T0020808.1 MGP_C3HHeJ_G0016016.1 mouse_genomes_project 1 87283703 87323233 - MGP_C3HHeJ_P0020808 Pde6d protein_coding protein_coding MGP_C3HHeJ_T0022879.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167889766 167906107 + MGP_C3HHeJ_P0022879 Slc19a2 protein_coding protein_coding MGP_C3HHeJ_T0022880.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167889775 167906091 + MGP_C3HHeJ_P0022880 Slc19a2 protein_coding protein_coding MGP_C3HHeJ_T0022881.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167889973 167904240 + MGP_C3HHeJ_P0022881 Slc19a2 protein_coding protein_coding MGP_C3HHeJ_T0022882.1 MGP_C3HHeJ_G0016447.1 mouse_genomes_project 1 167903074 167904173 + Slc19a2 protein_coding retained_intron MGP_C3HHeJ_T0018731.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12048743 12051388 - MGP_C3HHeJ_P0018731 Msc protein_coding protein_coding MGP_C3HHeJ_T0018732.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12049143 12050751 - MGP_C3HHeJ_P0018732 Msc protein_coding protein_coding MGP_C3HHeJ_T0018733.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12049332 12050063 - Msc protein_coding retained_intron MGP_C3HHeJ_T0018734.1 MGP_C3HHeJ_G0015618.1 mouse_genomes_project 1 12050164 12051390 - Msc protein_coding retained_intron MGP_C3HHeJ_T0020061.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150239 66359387 + MGP_C3HHeJ_P0020061 protein_coding protein_coding MGP_C3HHeJ_T0020062.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150279 66422306 + MGP_C3HHeJ_P0020062 protein_coding protein_coding MGP_C3HHeJ_T0020063.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150282 66422853 + MGP_C3HHeJ_P0020063 protein_coding protein_coding MGP_C3HHeJ_T0020064.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150431 66299830 + protein_coding processed_transcript MGP_C3HHeJ_T0020065.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66150510 66171062 + protein_coding processed_transcript MGP_C3HHeJ_T0020066.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66234354 66422851 + MGP_C3HHeJ_P0020066 protein_coding protein_coding MGP_C3HHeJ_T0020067.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66234369 66422851 + MGP_C3HHeJ_P0020067 protein_coding protein_coding MGP_C3HHeJ_T0020068.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299109 66419464 + MGP_C3HHeJ_P0020068 protein_coding protein_coding MGP_C3HHeJ_T0020069.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299226 66382709 + protein_coding retained_intron MGP_C3HHeJ_T0020070.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299388 66360061 + protein_coding retained_intron MGP_C3HHeJ_T0020071.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66299492 66380062 + MGP_C3HHeJ_P0020071 protein_coding protein_coding MGP_C3HHeJ_T0020072.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66343473 66422853 + MGP_C3HHeJ_P0020072 protein_coding protein_coding MGP_C3HHeJ_T0020073.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66343476 66422853 + MGP_C3HHeJ_P0020073 protein_coding protein_coding MGP_C3HHeJ_T0020074.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66359281 66392116 + MGP_C3HHeJ_P0020074 protein_coding protein_coding MGP_C3HHeJ_T0020075.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66359471 66391645 + MGP_C3HHeJ_P0020075 protein_coding protein_coding MGP_C3HHeJ_T0020076.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365711 66420232 + protein_coding processed_transcript MGP_C3HHeJ_T0020077.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365744 66392966 + MGP_C3HHeJ_P0020077 protein_coding protein_coding MGP_C3HHeJ_T0020078.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365751 66386993 + protein_coding processed_transcript MGP_C3HHeJ_T0020079.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66365777 66380151 + protein_coding retained_intron MGP_C3HHeJ_T0020080.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66393975 66405895 + protein_coding processed_transcript MGP_C3HHeJ_T0020081.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66394825 66418580 + MGP_C3HHeJ_P0020081 protein_coding protein_coding MGP_C3HHeJ_T0020082.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66394825 66418580 + MGP_C3HHeJ_P0020082 protein_coding protein_coding MGP_C3HHeJ_T0020083.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66395511 66418557 + MGP_C3HHeJ_P0020083 protein_coding protein_coding MGP_C3HHeJ_T0020084.1 MGP_C3HHeJ_G0015881.1 mouse_genomes_project 1 66413954 66419729 + MGP_C3HHeJ_P0020084 protein_coding protein_coding MGP_C3HHeJ_T0099851.1 MGP_C3HHeJ_G0038045.1 mouse_genomes_project 1 59468098 59468179 + Gm26287 snoRNA snoRNA MGP_C3HHeJ_T0011923.1 MGP_C3HHeJ_G0010027.1 mouse_genomes_project 1 48354687 48355682 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018554.1 MGP_C3HHeJ_G0015591.1 mouse_genomes_project 1 3459512 3499114 + MGP_C3HHeJ_P0018554 Fam150a protein_coding protein_coding MGP_C3HHeJ_T0020809.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87323589 87356241 + MGP_C3HHeJ_P0020809 Cops7b protein_coding protein_coding MGP_C3HHeJ_T0020810.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87323623 87330560 + MGP_C3HHeJ_P0020810 Cops7b protein_coding protein_coding MGP_C3HHeJ_T0020811.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87328366 87353368 + MGP_C3HHeJ_P0020811 Cops7b protein_coding protein_coding MGP_C3HHeJ_T0020812.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87328397 87353194 + MGP_C3HHeJ_P0020812 Cops7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020813.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87328408 87353846 + MGP_C3HHeJ_P0020813 Cops7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020814.1 MGP_C3HHeJ_G0016017.1 mouse_genomes_project 1 87338006 87348032 + Cops7b protein_coding processed_transcript MGP_C3HHeJ_T0000546.1 MGP_C3HHeJ_G0000493.1 mouse_genomes_project 1 101285170 101287879 + TEC TEC MGP_C3HHeJ_T0020103.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66916766 66940649 - MGP_C3HHeJ_P0020103 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020104.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66916766 66927997 - MGP_C3HHeJ_P0020104 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020105.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66916768 66927714 - MGP_C3HHeJ_P0020105 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020106.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66917474 66927710 - Myl1 protein_coding processed_transcript MGP_C3HHeJ_T0020107.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66918516 66927693 - MGP_C3HHeJ_P0020107 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020108.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66919112 66940890 - MGP_C3HHeJ_P0020108 Myl1 protein_coding protein_coding MGP_C3HHeJ_T0020109.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66922518 66927050 - Myl1 protein_coding retained_intron MGP_C3HHeJ_T0020110.1 MGP_C3HHeJ_G0015886.1 mouse_genomes_project 1 66939968 66940910 - Myl1 protein_coding retained_intron MGP_C3HHeJ_T0012008.1 MGP_C3HHeJ_G0010112.1 mouse_genomes_project 1 73794371 73795367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099831.1 MGP_C3HHeJ_G0038025.1 mouse_genomes_project 1 18387376 18387507 - Gm24171 snoRNA snoRNA MGP_C3HHeJ_T0012032.1 MGP_C3HHeJ_G0010136.1 mouse_genomes_project 1 85583386 85584308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011788.1 MGP_C3HHeJ_G0009892.1 mouse_genomes_project 1 6659998 6661093 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000365.1 MGP_C3HHeJ_G0000315.1 mouse_genomes_project 1 17524983 17529660 - TEC TEC MGP_C3HHeJ_T0020822.1 MGP_C3HHeJ_G0016020.1 mouse_genomes_project 1 87887843 87891061 - MGP_C3HHeJ_P0020822 Alppl2 protein_coding protein_coding MGP_C3HHeJ_T0020823.1 MGP_C3HHeJ_G0016020.1 mouse_genomes_project 1 87887844 87891078 - MGP_C3HHeJ_P0020823 Alppl2 protein_coding protein_coding MGP_C3HHeJ_T0020824.1 MGP_C3HHeJ_G0016020.1 mouse_genomes_project 1 87889929 87890955 - Alppl2 protein_coding retained_intron MGP_C3HHeJ_T0002909.1 MGP_C3HHeJ_G0002733.1 mouse_genomes_project 1 190479054 190480672 + 2010103J01Rik antisense antisense MGP_C3HHeJ_T0005672.1 MGP_C3HHeJ_G0004754.1 mouse_genomes_project 1 60591035 60608180 + 2310016D23Rik lincRNA lincRNA MGP_C3HHeJ_T0005960.1 MGP_C3HHeJ_G0004980.1 mouse_genomes_project 1 189841058 189847547 + 4930488B22Rik lincRNA lincRNA MGP_C3HHeJ_T0000417.1 MGP_C3HHeJ_G0000364.1 mouse_genomes_project 1 35639630 35639976 - TEC TEC MGP_C3HHeJ_T0021388.1 MGP_C3HHeJ_G0016148.1 mouse_genomes_project 1 109151063 109189986 + MGP_C3HHeJ_P0021388 Serpinb7 protein_coding protein_coding MGP_C3HHeJ_T0021389.1 MGP_C3HHeJ_G0016148.1 mouse_genomes_project 1 109176025 109207310 + MGP_C3HHeJ_P0021389 Serpinb7 protein_coding protein_coding MGP_C3HHeJ_T0000561.1 MGP_C3HHeJ_G0000508.1 mouse_genomes_project 1 122935541 122938650 + TEC TEC MGP_C3HHeJ_T0002776.1 MGP_C3HHeJ_G0002628.1 mouse_genomes_project 1 75680926 75685160 - Gm15178 antisense antisense MGP_C3HHeJ_T0011812.1 MGP_C3HHeJ_G0009916.1 mouse_genomes_project 1 15369117 15370516 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005820.1 MGP_C3HHeJ_G0004871.1 mouse_genomes_project 1 127377643 127386501 - 1700121L03Rik lincRNA lincRNA MGP_C3HHeJ_T0019106.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838824 34969539 - MGP_C3HHeJ_P0019106 Fam178b protein_coding protein_coding MGP_C3HHeJ_T0019107.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838828 34873367 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019108.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838828 34869355 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019109.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34838828 34880435 - MGP_C3HHeJ_P0019109 Fam178b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019110.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34840460 34880978 - MGP_C3HHeJ_P0019110 Fam178b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019111.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34840996 34867728 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019112.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34852523 34880456 - Fam178b protein_coding processed_transcript MGP_C3HHeJ_T0019113.1 MGP_C3HHeJ_G0015700.1 mouse_genomes_project 1 34879999 34969539 - MGP_C3HHeJ_P0019113 Fam178b protein_coding protein_coding MGP_C3HHeJ_T0021379.1 MGP_C3HHeJ_G0016143.1 mouse_genomes_project 1 108675302 108697966 + MGP_C3HHeJ_P0021379 Serpinb13 protein_coding protein_coding MGP_C3HHeJ_T0021380.1 MGP_C3HHeJ_G0016143.1 mouse_genomes_project 1 108675312 108697669 + MGP_C3HHeJ_P0021380 Serpinb13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000666.1 MGP_C3HHeJ_G0000611.1 mouse_genomes_project 1 160203749 160206391 - TEC TEC MGP_C3HHeJ_T0099880.1 MGP_C3HHeJ_G0038074.1 mouse_genomes_project 1 124665326 124665470 + Gm25771 snoRNA snoRNA MGP_C3HHeJ_T0023805.1 MGP_C3HHeJ_G0016670.1 mouse_genomes_project 1 189919511 189943993 - MGP_C3HHeJ_P0023805 Marc1 protein_coding protein_coding MGP_C3HHeJ_T0023806.1 MGP_C3HHeJ_G0016670.1 mouse_genomes_project 1 189920453 189943809 - MGP_C3HHeJ_P0023806 Marc1 protein_coding protein_coding MGP_C3HHeJ_T0011952.1 MGP_C3HHeJ_G0010056.1 mouse_genomes_project 1 58248389 58248741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002807.1 MGP_C3HHeJ_G0002653.1 mouse_genomes_project 1 121542711 121550167 - Gm27184 antisense antisense MGP_C3HHeJ_T0012150.1 MGP_C3HHeJ_G0010254.1 mouse_genomes_project 1 140900742 140901226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005894.1 MGP_C3HHeJ_G0004930.1 mouse_genomes_project 1 167786724 167790369 - Gm16548 lincRNA lincRNA MGP_C3HHeJ_T0000371.1 MGP_C3HHeJ_G0000320.1 mouse_genomes_project 1 21629822 21630212 + TEC TEC MGP_C3HHeJ_T0000372.1 MGP_C3HHeJ_G0000320.1 mouse_genomes_project 1 21629824 21630212 + TEC TEC MGP_C3HHeJ_T0020516.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765481 75770187 - MGP_C3HHeJ_P0020516 Chpf protein_coding protein_coding MGP_C3HHeJ_T0020517.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765487 75770223 - MGP_C3HHeJ_P0020517 Chpf protein_coding protein_coding MGP_C3HHeJ_T0020518.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765488 75769659 - Chpf protein_coding retained_intron MGP_C3HHeJ_T0020519.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75765488 75770035 - MGP_C3HHeJ_P0020519 Chpf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020520.1 MGP_C3HHeJ_G0015958.1 mouse_genomes_project 1 75768422 75770030 - MGP_C3HHeJ_P0020520 Chpf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098641.1 MGP_C3HHeJ_G0036835.1 mouse_genomes_project 1 119545620 119545784 + Gm24030 snRNA snRNA MGP_C3HHeJ_T0020650.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256962 83267551 + Mff protein_coding processed_transcript MGP_C3HHeJ_T0020651.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256963 83288088 + MGP_C3HHeJ_P0020651 Mff protein_coding protein_coding MGP_C3HHeJ_T0020652.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256969 83288091 + MGP_C3HHeJ_P0020652 Mff protein_coding protein_coding MGP_C3HHeJ_T0020653.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256978 83268772 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020654.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83256992 83288094 + MGP_C3HHeJ_P0020654 Mff protein_coding protein_coding MGP_C3HHeJ_T0020655.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83257007 83284755 + MGP_C3HHeJ_P0020655 Mff protein_coding protein_coding MGP_C3HHeJ_T0020656.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83261315 83284609 + MGP_C3HHeJ_P0020656 Mff protein_coding protein_coding MGP_C3HHeJ_T0020657.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83261369 83274846 + MGP_C3HHeJ_P0020657 Mff protein_coding protein_coding MGP_C3HHeJ_T0020658.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83261369 83283549 + MGP_C3HHeJ_P0020658 Mff protein_coding protein_coding MGP_C3HHeJ_T0020659.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83274600 83284687 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020660.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83274939 83278857 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020661.1 MGP_C3HHeJ_G0015986.1 mouse_genomes_project 1 83281356 83284696 + Mff protein_coding retained_intron MGP_C3HHeJ_T0020583.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79069596 79124257 + MGP_C3HHeJ_P0020583 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020584.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79069654 79123481 + MGP_C3HHeJ_P0020584 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020587.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79084010 79104798 + MGP_C3HHeJ_P0020587 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020588.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79096784 79124261 + MGP_C3HHeJ_P0020588 Acsl3 protein_coding protein_coding MGP_C3HHeJ_T0020589.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79097058 79109170 + Acsl3 protein_coding retained_intron MGP_C3HHeJ_T0020590.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79106779 79113547 + Acsl3 protein_coding retained_intron MGP_C3HHeJ_T0020591.1 MGP_C3HHeJ_G0015969.1 mouse_genomes_project 1 79113173 79117803 + Acsl3 protein_coding retained_intron MGP_C3HHeJ_T0000481.1 MGP_C3HHeJ_G0000428.1 mouse_genomes_project 1 68875620 68878894 - TEC TEC MGP_C3HHeJ_T0022447.1 MGP_C3HHeJ_G0016367.1 mouse_genomes_project 1 157003146 157008283 + MGP_C3HHeJ_P0022447 Rgs16 protein_coding protein_coding MGP_C3HHeJ_T0011866.1 MGP_C3HHeJ_G0009970.1 mouse_genomes_project 1 31627834 31628252 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021686.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133248166 133263117 + MGP_C3HHeJ_P0021686 Fcmr protein_coding protein_coding MGP_C3HHeJ_T0021687.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133248277 133257570 + Fcmr protein_coding processed_transcript MGP_C3HHeJ_T0021688.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133260607 133263105 + Fcmr protein_coding processed_transcript MGP_C3HHeJ_T0021689.1 MGP_C3HHeJ_G0016212.1 mouse_genomes_project 1 133260780 133263116 + Fcmr protein_coding processed_transcript MGP_C3HHeJ_T0018704.1 MGP_C3HHeJ_G0015612.1 mouse_genomes_project 1 10347284 10361655 - MGP_C3HHeJ_P0018704 Prdm14 protein_coding protein_coding MGP_C3HHeJ_T0005779.1 MGP_C3HHeJ_G0004840.1 mouse_genomes_project 1 99524441 99545398 + Gm29461 lincRNA lincRNA MGP_C3HHeJ_T0099896.1 MGP_C3HHeJ_G0038090.1 mouse_genomes_project 1 164181626 164181758 + Gm23528 snoRNA snoRNA MGP_C3HHeJ_T0101566.1 MGP_C3HHeJ_G0039532.1 mouse_genomes_project 1 89090862 89091645 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019202.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36248973 36257033 + MGP_C3HHeJ_P0019202 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019203.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36249028 36256862 + MGP_C3HHeJ_P0019203 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019204.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36249029 36251744 + Mrpl30 protein_coding retained_intron MGP_C3HHeJ_T0019205.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36249039 36252482 + MGP_C3HHeJ_P0019205 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019206.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36251430 36256663 + MGP_C3HHeJ_P0019206 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019207.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36252432 36256836 + MGP_C3HHeJ_P0019207 Mrpl30 protein_coding protein_coding MGP_C3HHeJ_T0019208.1 MGP_C3HHeJ_G0015715.1 mouse_genomes_project 1 36255753 36256623 + Mrpl30 protein_coding retained_intron MGP_C3HHeJ_T0000713.1 MGP_C3HHeJ_G0000658.1 mouse_genomes_project 1 177211363 177212224 + TEC TEC MGP_C3HHeJ_T0021191.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94472562 94479217 - MGP_C3HHeJ_P0021191 Mterf4 protein_coding protein_coding MGP_C3HHeJ_T0021192.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94474568 94479269 - MGP_C3HHeJ_P0021192 Mterf4 protein_coding protein_coding MGP_C3HHeJ_T0021193.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94474791 94476257 - Mterf4 protein_coding processed_transcript MGP_C3HHeJ_T0021194.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94475280 94479218 - MGP_C3HHeJ_P0021194 Mterf4 protein_coding protein_coding MGP_C3HHeJ_T0021195.1 MGP_C3HHeJ_G0016104.1 mouse_genomes_project 1 94476852 94479233 - Mterf4 protein_coding retained_intron MGP_C3HHeJ_T0005694.1 MGP_C3HHeJ_G0004773.1 mouse_genomes_project 1 69589409 69592438 + Gm28497 lincRNA lincRNA MGP_C3HHeJ_T0018632.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172673 7174029 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018633.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172692 7183639 + MGP_C3HHeJ_P0018633 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018634.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172903 7277543 + MGP_C3HHeJ_P0018634 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018635.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172912 7201830 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018636.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172935 7199111 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018637.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7172948 7207056 + MGP_C3HHeJ_P0018637 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018638.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174453 7198935 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018639.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174459 7207914 + MGP_C3HHeJ_P0018639 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018640.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174459 7208271 + MGP_C3HHeJ_P0018640 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018641.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174463 7198921 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018642.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174471 7207042 + MGP_C3HHeJ_P0018642 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018643.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174509 7200050 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018644.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7174841 7198886 + MGP_C3HHeJ_P0018644 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018645.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7182591 7276920 + MGP_C3HHeJ_P0018645 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018646.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7196985 7206515 + MGP_C3HHeJ_P0018646 Cspp1 protein_coding protein_coding MGP_C3HHeJ_T0018647.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7211114 7216150 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018648.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7214310 7227456 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018649.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7214800 7224891 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018650.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7214853 7231894 + MGP_C3HHeJ_P0018650 Cspp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018651.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7229385 7231956 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018652.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7237504 7249026 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018653.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7244699 7249015 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018654.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7254331 7275178 + MGP_C3HHeJ_P0018654 Cspp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018655.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7256880 7258202 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018656.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7267138 7271022 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018657.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7270962 7274464 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0018658.1 MGP_C3HHeJ_G0015605.1 mouse_genomes_project 1 7274974 7277097 + Cspp1 protein_coding retained_intron MGP_C3HHeJ_T0000589.1 MGP_C3HHeJ_G0000536.1 mouse_genomes_project 1 132000092 132002765 + TEC TEC MGP_C3HHeJ_T0019784.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58486315 58539975 + MGP_C3HHeJ_P0019784 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0019785.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58486418 58539226 + MGP_C3HHeJ_P0019785 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0019786.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58493360 58539480 + MGP_C3HHeJ_P0019786 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0019787.1 MGP_C3HHeJ_G0015828.1 mouse_genomes_project 1 58493511 58539226 + MGP_C3HHeJ_P0019787 Casp8 protein_coding protein_coding MGP_C3HHeJ_T0022470.1 MGP_C3HHeJ_G0016373.1 mouse_genomes_project 1 157514224 157518731 + MGP_C3HHeJ_P0022470 Zfp648 protein_coding protein_coding MGP_C3HHeJ_T0005799.1 MGP_C3HHeJ_G0004856.1 mouse_genomes_project 1 121318518 121341331 - Gm29456 lincRNA lincRNA MGP_C3HHeJ_T0021677.1 MGP_C3HHeJ_G0016208.1 mouse_genomes_project 1 133092854 133099928 + MGP_C3HHeJ_P0021677 Yod1 protein_coding protein_coding MGP_C3HHeJ_T0022559.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159647604 159746766 - MGP_C3HHeJ_P0022559 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022560.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159647604 159743924 - MGP_C3HHeJ_P0022560 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022561.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159681630 159698394 - Axdnd1 protein_coding processed_transcript MGP_C3HHeJ_T0022562.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159687420 159723920 - Axdnd1 protein_coding processed_transcript MGP_C3HHeJ_T0022563.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159688013 159722473 - MGP_C3HHeJ_P0022563 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022564.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159723980 159726691 - Axdnd1 protein_coding processed_transcript MGP_C3HHeJ_T0022565.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159743974 159745500 - MGP_C3HHeJ_P0022565 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0022566.1 MGP_C3HHeJ_G0016389.1 mouse_genomes_project 1 159743974 159745536 - MGP_C3HHeJ_P0022566 Axdnd1 protein_coding protein_coding MGP_C3HHeJ_T0000565.1 MGP_C3HHeJ_G0000512.1 mouse_genomes_project 1 124633420 124634542 + TEC TEC MGP_C3HHeJ_T0021666.1 MGP_C3HHeJ_G0016206.1 mouse_genomes_project 1 133042557 133091327 - MGP_C3HHeJ_P0021666 Gm29427 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019632.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54565008 54575268 - MGP_C3HHeJ_P0019632 Hspd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019633.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54565015 54575245 - MGP_C3HHeJ_P0019633 Hspd1 protein_coding protein_coding MGP_C3HHeJ_T0019634.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54570287 54575464 - MGP_C3HHeJ_P0019634 Hspd1 protein_coding protein_coding MGP_C3HHeJ_T0019635.1 MGP_C3HHeJ_G0015800.1 mouse_genomes_project 1 54571753 54575464 - MGP_C3HHeJ_P0019635 Hspd1 protein_coding protein_coding MGP_C3HHeJ_T0022484.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491500 158539994 + MGP_C3HHeJ_P0022484 Stx6 protein_coding protein_coding MGP_C3HHeJ_T0022485.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491504 158536279 + MGP_C3HHeJ_P0022485 Stx6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022486.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491533 158532590 + MGP_C3HHeJ_P0022486 Stx6 protein_coding protein_coding MGP_C3HHeJ_T0022487.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491556 158525803 + Stx6 protein_coding processed_transcript MGP_C3HHeJ_T0022488.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158491584 158510612 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022489.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158517757 158522629 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022490.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158521672 158536357 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022491.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158522116 158528095 + Stx6 protein_coding retained_intron MGP_C3HHeJ_T0022492.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158525784 158542552 + MGP_C3HHeJ_P0022492 Stx6 protein_coding protein_coding MGP_C3HHeJ_T0022493.1 MGP_C3HHeJ_G0016377.1 mouse_genomes_project 1 158529353 158536582 + Stx6 protein_coding processed_transcript MGP_C3HHeJ_T0011992.1 MGP_C3HHeJ_G0010096.1 mouse_genomes_project 1 66016591 66017337 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019226.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36426735 36502214 - MGP_C3HHeJ_P0019226 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0019227.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36426745 36462004 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019228.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36427249 36428200 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019229.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36430468 36431652 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019230.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36441571 36457655 - MGP_C3HHeJ_P0019230 Rev1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019231.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36445340 36459526 - MGP_C3HHeJ_P0019231 Rev1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019232.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36448520 36455233 - Rev1 protein_coding processed_transcript MGP_C3HHeJ_T0019233.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36452949 36457721 - Rev1 protein_coding retained_intron MGP_C3HHeJ_T0019234.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36465962 36500848 - MGP_C3HHeJ_P0019234 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0019235.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36471460 36500864 - MGP_C3HHeJ_P0019235 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0019236.1 MGP_C3HHeJ_G0015720.1 mouse_genomes_project 1 36480226 36502353 - MGP_C3HHeJ_P0019236 Rev1 protein_coding protein_coding MGP_C3HHeJ_T0011885.1 MGP_C3HHeJ_G0009989.1 mouse_genomes_project 1 37114334 37114836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002692.1 MGP_C3HHeJ_G0002567.1 mouse_genomes_project 1 13579795 13600149 + Gm28095 antisense antisense MGP_C3HHeJ_T0000557.1 MGP_C3HHeJ_G0000504.1 mouse_genomes_project 1 112789651 112792404 - TEC TEC MGP_C3HHeJ_T0022816.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166393235 166414537 - MGP_C3HHeJ_P0022816 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0022817.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166393930 166413414 - MGP_C3HHeJ_P0022817 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0022818.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166402341 166414537 - Fmo4 protein_coding retained_intron MGP_C3HHeJ_T0022819.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166403098 166407963 - Fmo4 protein_coding retained_intron MGP_C3HHeJ_T0022820.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166407002 166414792 - MGP_C3HHeJ_P0022820 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0022821.1 MGP_C3HHeJ_G0016430.1 mouse_genomes_project 1 166407773 166414838 - MGP_C3HHeJ_P0022821 Fmo4 protein_coding protein_coding MGP_C3HHeJ_T0012038.1 MGP_C3HHeJ_G0010142.1 mouse_genomes_project 1 88925242 88926824 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022101.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138471519 138520194 - MGP_C3HHeJ_P0022101 Pkp1 protein_coding protein_coding MGP_C3HHeJ_T0022102.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138473074 138520107 - MGP_C3HHeJ_P0022102 Pkp1 protein_coding protein_coding MGP_C3HHeJ_T0022103.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138473490 138520129 - MGP_C3HHeJ_P0022103 Pkp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022104.1 MGP_C3HHeJ_G0016300.1 mouse_genomes_project 1 138477442 138478400 - Pkp1 protein_coding retained_intron MGP_C3HHeJ_T0023178.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175190087 175195272 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023179.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175191058 175195272 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023180.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175191058 175195272 - MGP_C3HHeJ_P0023180 Ppox protein_coding protein_coding MGP_C3HHeJ_T0023181.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175191513 175194845 - MGP_C3HHeJ_P0023181 Ppox protein_coding protein_coding MGP_C3HHeJ_T0023182.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175192201 175193898 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023183.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175193931 175194607 - Ppox protein_coding processed_transcript MGP_C3HHeJ_T0023184.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175194178 175195272 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0023185.1 MGP_C3HHeJ_G0016516.1 mouse_genomes_project 1 175194449 175195205 - Ppox protein_coding retained_intron MGP_C3HHeJ_T0101550.1 MGP_C3HHeJ_G0039516.1 mouse_genomes_project 1 58542551 58635229 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011823.1 MGP_C3HHeJ_G0009927.1 mouse_genomes_project 1 18902610 18902826 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020938.1 MGP_C3HHeJ_G0016041.1 mouse_genomes_project 1 88959273 89122344 + MGP_C3HHeJ_P0020938 Ugt1a8 protein_coding protein_coding MGP_C3HHeJ_T0016761.1 MGP_C3HHeJ_G0014854.1 mouse_genomes_project 1 41312385 41318763 - Pantr2 processed_transcript lincRNA MGP_C3HHeJ_T0016762.1 MGP_C3HHeJ_G0014854.1 mouse_genomes_project 1 41312396 41313377 - Pantr2 processed_transcript TEC MGP_C3HHeJ_T0023010.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736222 170831368 + MGP_C3HHeJ_P0023010 Fam78b protein_coding protein_coding MGP_C3HHeJ_T0023011.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736222 170831368 + MGP_C3HHeJ_P0023011 Fam78b protein_coding protein_coding MGP_C3HHeJ_T0023012.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736237 170829143 + MGP_C3HHeJ_P0023012 Fam78b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023013.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736271 170821190 + MGP_C3HHeJ_P0023013 Fam78b protein_coding protein_coding MGP_C3HHeJ_T0023014.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736385 170828790 + MGP_C3HHeJ_P0023014 Fam78b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023015.1 MGP_C3HHeJ_G0016475.1 mouse_genomes_project 1 170736394 170831075 + MGP_C3HHeJ_P0023015 Fam78b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005983.1 MGP_C3HHeJ_G0005000.1 mouse_genomes_project 1 196843516 196873918 - Gm32200 lincRNA lincRNA MGP_C3HHeJ_T0099829.1 MGP_C3HHeJ_G0038023.1 mouse_genomes_project 1 16994240 16994305 - Gm24633 snoRNA snoRNA MGP_C3HHeJ_T0002836.1 MGP_C3HHeJ_G0002675.1 mouse_genomes_project 1 138867788 138882788 + Gm26781 antisense antisense MGP_C3HHeJ_T0019412.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814637 42816451 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0019413.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814740 42851130 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0019414.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814740 42851130 + MGP_C3HHeJ_P0019414 Ercc5 protein_coding protein_coding MGP_C3HHeJ_T0019415.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814802 42826789 + Ercc5 protein_coding processed_transcript MGP_C3HHeJ_T0019416.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42814825 42823201 + Ercc5 protein_coding processed_transcript MGP_C3HHeJ_T0019417.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42821889 42836755 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0019418.1 MGP_C3HHeJ_G0015760.1 mouse_genomes_project 1 42823775 42836974 + Ercc5 protein_coding retained_intron MGP_C3HHeJ_T0099910.1 MGP_C3HHeJ_G0038104.1 mouse_genomes_project 1 169138080 169138165 + Gm24637 snoRNA snoRNA MGP_C3HHeJ_T0021297.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133891 99153670 + MGP_C3HHeJ_P0021297 Gin1 protein_coding protein_coding MGP_C3HHeJ_T0021298.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133898 99141848 + MGP_C3HHeJ_P0021298 Gin1 protein_coding protein_coding MGP_C3HHeJ_T0021299.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133916 99154410 + MGP_C3HHeJ_P0021299 Gin1 protein_coding protein_coding MGP_C3HHeJ_T0021300.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133920 99134725 + Gin1 protein_coding processed_transcript MGP_C3HHeJ_T0021301.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99133929 99153707 + MGP_C3HHeJ_P0021301 Gin1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021302.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99137427 99139749 + Gin1 protein_coding retained_intron MGP_C3HHeJ_T0021303.1 MGP_C3HHeJ_G0016127.1 mouse_genomes_project 1 99141107 99145836 + MGP_C3HHeJ_P0021303 Gin1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020196.1 MGP_C3HHeJ_G0015907.1 mouse_genomes_project 1 73281240 73282076 - MGP_C3HHeJ_P0020196 Tnp1 protein_coding protein_coding MGP_C3HHeJ_T0000438.1 MGP_C3HHeJ_G0000385.1 mouse_genomes_project 1 51891081 51892967 - TEC TEC MGP_C3HHeJ_T0000687.1 MGP_C3HHeJ_G0000632.1 mouse_genomes_project 1 164459957 164461712 + TEC TEC MGP_C3HHeJ_T0002774.1 MGP_C3HHeJ_G0002627.1 mouse_genomes_project 1 75657091 75663884 - Gm15179 antisense antisense MGP_C3HHeJ_T0002775.1 MGP_C3HHeJ_G0002627.1 mouse_genomes_project 1 75657151 75659334 - Gm15179 antisense antisense MGP_C3HHeJ_T0012061.1 MGP_C3HHeJ_G0010165.1 mouse_genomes_project 1 101741121 101741968 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022735.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642872 164690883 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0022736.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642872 164690883 - MGP_C3HHeJ_P0022736 Klhl20 protein_coding protein_coding MGP_C3HHeJ_T0022737.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642877 164690800 - MGP_C3HHeJ_P0022737 Klhl20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022738.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164642895 164650149 - MGP_C3HHeJ_P0022738 Klhl20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022739.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164650968 164690883 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0022740.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164657379 164661592 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0022741.1 MGP_C3HHeJ_G0016415.1 mouse_genomes_project 1 164664807 164690814 - Klhl20 protein_coding retained_intron MGP_C3HHeJ_T0021824.1 MGP_C3HHeJ_G0016243.1 mouse_genomes_project 1 134954113 134956523 + MGP_C3HHeJ_P0021824 Tmem81 protein_coding protein_coding MGP_C3HHeJ_T0021825.1 MGP_C3HHeJ_G0016243.1 mouse_genomes_project 1 134954772 134956523 + MGP_C3HHeJ_P0021825 Tmem81 protein_coding protein_coding MGP_C3HHeJ_T0020522.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770447 75776604 + MGP_C3HHeJ_P0020522 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0020523.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770491 75773528 + MGP_C3HHeJ_P0020523 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0020524.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770495 75776616 + MGP_C3HHeJ_P0020524 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0020525.1 MGP_C3HHeJ_G0015960.1 mouse_genomes_project 1 75770619 75773591 + MGP_C3HHeJ_P0020525 Tmem198 protein_coding protein_coding MGP_C3HHeJ_T0023546.1 MGP_C3HHeJ_G0016618.1 mouse_genomes_project 1 183414324 183609464 + Kif26b protein_coding retained_intron MGP_C3HHeJ_T0023547.1 MGP_C3HHeJ_G0016618.1 mouse_genomes_project 1 183414324 183841557 + MGP_C3HHeJ_P0023547 Kif26b protein_coding protein_coding MGP_C3HHeJ_T0023548.1 MGP_C3HHeJ_G0016618.1 mouse_genomes_project 1 183695387 183835213 + MGP_C3HHeJ_P0023548 Kif26b protein_coding protein_coding MGP_C3HHeJ_T0011767.1 MGP_C3HHeJ_G0009871.1 mouse_genomes_project 1 4114626 4114951 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022757.1 MGP_C3HHeJ_G0016420.1 mouse_genomes_project 1 165358831 165366624 - MGP_C3HHeJ_P0022757 Fasl protein_coding protein_coding MGP_C3HHeJ_T0022758.1 MGP_C3HHeJ_G0016420.1 mouse_genomes_project 1 165359564 165366487 - MGP_C3HHeJ_P0022758 Fasl protein_coding protein_coding MGP_C3HHeJ_T0012172.1 MGP_C3HHeJ_G0010276.1 mouse_genomes_project 1 151589367 151589670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005726.1 MGP_C3HHeJ_G0004794.1 mouse_genomes_project 1 79000769 79017483 - 5730419F03Rik lincRNA lincRNA MGP_C3HHeJ_T0011153.1 MGP_C3HHeJ_G0009286.1 mouse_genomes_project 1 63037356 63037532 + Gm27390 misc_RNA misc_RNA MGP_C3HHeJ_T0022292.1 MGP_C3HHeJ_G0016340.1 mouse_genomes_project 1 153215874 153224249 + MGP_C3HHeJ_P0022292 Ptgs2 protein_coding protein_coding MGP_C3HHeJ_T0022293.1 MGP_C3HHeJ_G0016340.1 mouse_genomes_project 1 153216175 153217171 + MGP_C3HHeJ_P0022293 Ptgs2 protein_coding protein_coding MGP_C3HHeJ_T0023410.1 MGP_C3HHeJ_G0016576.1 mouse_genomes_project 1 178261881 178312288 - MGP_C3HHeJ_P0023410 Ifi203 protein_coding protein_coding MGP_C3HHeJ_T0023413.1 MGP_C3HHeJ_G0016576.1 mouse_genomes_project 1 178296731 178312288 - Ifi203 protein_coding processed_transcript MGP_C3HHeJ_T0023417.1 MGP_C3HHeJ_G0016576.1 mouse_genomes_project 1 178306400 178312196 - Ifi203 protein_coding processed_transcript MGP_C3HHeJ_T0009398.1 MGP_C3HHeJ_G0007531.1 mouse_genomes_project 1 44003635 44003776 + miRNA miRNA MGP_C3HHeJ_T0012274.1 MGP_C3HHeJ_G0010378.1 mouse_genomes_project 1 198906782 198907185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098597.1 MGP_C3HHeJ_G0036791.1 mouse_genomes_project 1 6951926 6952031 - Gm22607 snRNA snRNA MGP_C3HHeJ_T0016765.1 MGP_C3HHeJ_G0014856.1 mouse_genomes_project 1 43108883 43110522 + Gm28893 processed_transcript processed_transcript MGP_C3HHeJ_T0020409.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75480192 75481065 - Glb1l protein_coding processed_transcript MGP_C3HHeJ_T0020410.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75480199 75495881 - MGP_C3HHeJ_P0020410 Glb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020411.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481047 75484547 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020412.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481303 75495881 - MGP_C3HHeJ_P0020412 Glb1l protein_coding protein_coding MGP_C3HHeJ_T0020413.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481447 75494526 - MGP_C3HHeJ_P0020413 Glb1l protein_coding protein_coding MGP_C3HHeJ_T0020414.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481447 75486265 - MGP_C3HHeJ_P0020414 Glb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020415.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75481785 75494597 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020416.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75482049 75484623 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020417.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75484326 75485670 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020418.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75484580 75485198 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0020419.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75486093 75495916 - MGP_C3HHeJ_P0020419 Glb1l protein_coding protein_coding MGP_C3HHeJ_T0020420.1 MGP_C3HHeJ_G0015946.1 mouse_genomes_project 1 75492805 75495856 - Glb1l protein_coding retained_intron MGP_C3HHeJ_T0012240.1 MGP_C3HHeJ_G0010344.1 mouse_genomes_project 1 181912004 181912321 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022759.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165397013 165459293 - MGP_C3HHeJ_P0022759 Suco protein_coding protein_coding MGP_C3HHeJ_T0022760.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165401310 165403633 - Suco protein_coding retained_intron MGP_C3HHeJ_T0022761.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165409006 165410161 - Suco protein_coding retained_intron MGP_C3HHeJ_T0022762.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165416030 165425636 - Suco protein_coding processed_transcript MGP_C3HHeJ_T0022763.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165419673 165425196 - Suco protein_coding retained_intron MGP_C3HHeJ_T0022764.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165425690 165436355 - MGP_C3HHeJ_P0022764 Suco protein_coding protein_coding MGP_C3HHeJ_T0022765.1 MGP_C3HHeJ_G0016421.1 mouse_genomes_project 1 165435441 165440061 - MGP_C3HHeJ_P0022765 Suco protein_coding protein_coding MGP_C3HHeJ_T0012215.1 MGP_C3HHeJ_G0010319.1 mouse_genomes_project 1 169185554 169187134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018587.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662433 6691056 + MGP_C3HHeJ_P0018587 Adhfe1 protein_coding protein_coding MGP_C3HHeJ_T0018588.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662540 6689988 + MGP_C3HHeJ_P0018588 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018589.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662577 6668152 + MGP_C3HHeJ_P0018589 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018590.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662592 6670033 + MGP_C3HHeJ_P0018590 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018591.1 MGP_C3HHeJ_G0015596.1 mouse_genomes_project 1 6662604 6693758 + MGP_C3HHeJ_P0018591 Adhfe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020177.1 MGP_C3HHeJ_G0015899.1 mouse_genomes_project 1 72511771 72529985 + MGP_C3HHeJ_P0020177 Tmem169 protein_coding protein_coding MGP_C3HHeJ_T0020178.1 MGP_C3HHeJ_G0015899.1 mouse_genomes_project 1 72511797 72527639 + MGP_C3HHeJ_P0020178 Tmem169 protein_coding protein_coding MGP_C3HHeJ_T0000750.1 MGP_C3HHeJ_G0000693.1 mouse_genomes_project 1 190498177 190500595 + TEC TEC MGP_C3HHeJ_T0000751.1 MGP_C3HHeJ_G0000694.1 mouse_genomes_project 1 191292572 191292765 - TEC TEC MGP_C3HHeJ_T0000519.1 MGP_C3HHeJ_G0000466.1 mouse_genomes_project 1 87559226 87562216 + TEC TEC MGP_C3HHeJ_T0011790.1 MGP_C3HHeJ_G0009894.1 mouse_genomes_project 1 6660105 6661039 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011980.1 MGP_C3HHeJ_G0010084.1 mouse_genomes_project 1 63242646 63243263 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098642.1 MGP_C3HHeJ_G0036836.1 mouse_genomes_project 1 120453127 120453252 - Gm22710 snRNA snRNA MGP_C3HHeJ_T0018491.1 MGP_C3HHeJ_G0015580.1 mouse_genomes_project 1 1354881 1478334 - MGP_C3HHeJ_P0018491 protein_coding protein_coding MGP_C3HHeJ_T0018492.1 MGP_C3HHeJ_G0015580.1 mouse_genomes_project 1 1405432 1422314 - MGP_C3HHeJ_P0018492 protein_coding protein_coding MGP_C3HHeJ_T0020569.1 MGP_C3HHeJ_G0015966.1 mouse_genomes_project 1 78700154 78813832 + MGP_C3HHeJ_P0020569 Sgpp2 protein_coding protein_coding MGP_C3HHeJ_T0011837.1 MGP_C3HHeJ_G0009941.1 mouse_genomes_project 1 23297505 23298075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024005.1 MGP_C3HHeJ_G0016710.1 mouse_genomes_project 1 197332891 197339398 + MGP_C3HHeJ_P0024005 Slc30a1 protein_coding protein_coding MGP_C3HHeJ_T0024006.1 MGP_C3HHeJ_G0016710.1 mouse_genomes_project 1 197333380 197335299 + MGP_C3HHeJ_P0024006 Slc30a1 protein_coding protein_coding MGP_C3HHeJ_T0012053.1 MGP_C3HHeJ_G0010157.1 mouse_genomes_project 1 96503532 96504380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019489.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51217507 51346069 + MGP_C3HHeJ_P0019489 Stat4 protein_coding protein_coding MGP_C3HHeJ_T0019490.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51244171 51346064 + MGP_C3HHeJ_P0019490 Stat4 protein_coding protein_coding MGP_C3HHeJ_T0019491.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51244554 51311894 + Stat4 protein_coding retained_intron MGP_C3HHeJ_T0019492.1 MGP_C3HHeJ_G0015776.1 mouse_genomes_project 1 51344328 51346068 + Stat4 protein_coding retained_intron MGP_C3HHeJ_T0005877.1 MGP_C3HHeJ_G0004918.1 mouse_genomes_project 1 158390074 158412176 - Gm9530 lincRNA lincRNA MGP_C3HHeJ_T0000422.1 MGP_C3HHeJ_G0000369.1 mouse_genomes_project 1 37159870 37160380 + TEC TEC MGP_C3HHeJ_T0024127.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200643132 200694855 - MGP_C3HHeJ_P0024127 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024128.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200643132 200694854 - MGP_C3HHeJ_P0024128 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024129.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200643138 200672975 - MGP_C3HHeJ_P0024129 Cr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024130.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200645640 200667460 - Cr2 protein_coding retained_intron MGP_C3HHeJ_T0024131.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200645982 200664813 - MGP_C3HHeJ_P0024131 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024132.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200646002 200694787 - MGP_C3HHeJ_P0024132 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024133.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200647079 200667551 - Cr2 protein_coding retained_intron MGP_C3HHeJ_T0024134.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200648251 200694749 - MGP_C3HHeJ_P0024134 Cr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024135.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200676267 200681487 - Cr2 protein_coding processed_transcript MGP_C3HHeJ_T0024136.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200678814 200684238 - MGP_C3HHeJ_P0024136 Cr2 protein_coding protein_coding MGP_C3HHeJ_T0024137.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200678901 200694854 - Cr2 protein_coding processed_transcript MGP_C3HHeJ_T0024138.1 MGP_C3HHeJ_G0016730.1 mouse_genomes_project 1 200683714 200694854 - Cr2 protein_coding processed_transcript MGP_C3HHeJ_T0000569.1 MGP_C3HHeJ_G0000516.1 mouse_genomes_project 1 125539410 125541471 - TEC TEC MGP_C3HHeJ_T0009416.1 MGP_C3HHeJ_G0007549.1 mouse_genomes_project 1 75242680 75242744 - Mir375 miRNA miRNA MGP_C3HHeJ_T0019447.1 MGP_C3HHeJ_G0015766.1 mouse_genomes_project 1 44617348 44618097 - Gm5269 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0019448.1 MGP_C3HHeJ_G0015766.1 mouse_genomes_project 1 44617764 44617902 - MGP_C3HHeJ_P0019448 Gm5269 protein_coding protein_coding MGP_C3HHeJ_T0019169.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773595 35781734 + MGP_C3HHeJ_P0019169 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019170.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773626 35781874 + MGP_C3HHeJ_P0019170 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019171.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773633 35780229 + MGP_C3HHeJ_P0019171 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019172.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773642 35780021 + MGP_C3HHeJ_P0019172 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019173.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773658 35781737 + MGP_C3HHeJ_P0019173 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019174.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35773664 35775011 + MGP_C3HHeJ_P0019174 Unc50 protein_coding protein_coding MGP_C3HHeJ_T0019175.1 MGP_C3HHeJ_G0015709.1 mouse_genomes_project 1 35774800 35780363 + Unc50 protein_coding retained_intron MGP_C3HHeJ_T0009378.1 MGP_C3HHeJ_G0007511.1 mouse_genomes_project 1 9606847 9606968 + Mir6341 miRNA miRNA MGP_C3HHeJ_T0002794.1 MGP_C3HHeJ_G0002646.1 mouse_genomes_project 1 94824262 94825579 + Gm28536 antisense antisense MGP_C3HHeJ_T0021483.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121677394 121857124 - MGP_C3HHeJ_P0021483 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021484.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121682971 121712360 - MGP_C3HHeJ_P0021484 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021485.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121714381 121856858 - MGP_C3HHeJ_P0021485 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021486.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121717404 121766216 - MGP_C3HHeJ_P0021486 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021487.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121729752 121739631 - Ptpn4 protein_coding retained_intron MGP_C3HHeJ_T0021488.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121750081 121801395 - MGP_C3HHeJ_P0021488 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021489.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121768184 121821911 - MGP_C3HHeJ_P0021489 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021490.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121782923 121856582 - MGP_C3HHeJ_P0021490 Ptpn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021491.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121783263 121856582 - MGP_C3HHeJ_P0021491 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021492.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121790890 121821931 - MGP_C3HHeJ_P0021492 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0021493.1 MGP_C3HHeJ_G0016167.1 mouse_genomes_project 1 121790950 121856510 - MGP_C3HHeJ_P0021493 Ptpn4 protein_coding protein_coding MGP_C3HHeJ_T0024030.1 MGP_C3HHeJ_G0016714.1 mouse_genomes_project 1 197577468 197919335 + MGP_C3HHeJ_P0024030 Kcnh1 protein_coding protein_coding MGP_C3HHeJ_T0024031.1 MGP_C3HHeJ_G0016714.1 mouse_genomes_project 1 197577468 197919335 + MGP_C3HHeJ_P0024031 Kcnh1 protein_coding protein_coding MGP_C3HHeJ_T0024032.1 MGP_C3HHeJ_G0016714.1 mouse_genomes_project 1 197834649 197919335 + MGP_C3HHeJ_P0024032 Kcnh1 protein_coding protein_coding MGP_C3HHeJ_T0023757.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101231 188121320 + MGP_C3HHeJ_P0023757 Tlr5 protein_coding protein_coding MGP_C3HHeJ_T0023758.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101231 188121673 + MGP_C3HHeJ_P0023758 Tlr5 protein_coding protein_coding MGP_C3HHeJ_T0023759.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101265 188116716 + Tlr5 protein_coding processed_transcript MGP_C3HHeJ_T0023760.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188101271 188116480 + Tlr5 protein_coding processed_transcript MGP_C3HHeJ_T0023761.1 MGP_C3HHeJ_G0016660.1 mouse_genomes_project 1 188117804 188121628 + MGP_C3HHeJ_P0023761 Tlr5 protein_coding protein_coding MGP_C3HHeJ_T0023529.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183046219 183118629 + MGP_C3HHeJ_P0023529 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0023530.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183046334 183126327 + MGP_C3HHeJ_P0023530 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0023531.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183047091 183117066 + MGP_C3HHeJ_P0023531 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0023532.1 MGP_C3HHeJ_G0016613.1 mouse_genomes_project 1 183125128 183126321 + MGP_C3HHeJ_P0023532 Desi2 protein_coding protein_coding MGP_C3HHeJ_T0005585.1 MGP_C3HHeJ_G0004692.1 mouse_genomes_project 1 18303007 18306004 + Gm28065 lincRNA lincRNA MGP_C3HHeJ_T0000448.1 MGP_C3HHeJ_G0000395.1 mouse_genomes_project 1 56551819 56553657 + TEC TEC MGP_C3HHeJ_T0101581.1 MGP_C3HHeJ_G0039547.1 mouse_genomes_project 1 119765369 119819091 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000533.1 MGP_C3HHeJ_G0000480.1 mouse_genomes_project 1 91559501 91562299 + TEC TEC MGP_C3HHeJ_T0019407.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42783894 42791556 + MGP_C3HHeJ_P0019407 protein_coding protein_coding MGP_C3HHeJ_T0019408.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42783937 42791319 + protein_coding processed_transcript MGP_C3HHeJ_T0019409.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42784445 42791337 + protein_coding processed_transcript MGP_C3HHeJ_T0019410.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42784561 42812747 + MGP_C3HHeJ_P0019410 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019411.1 MGP_C3HHeJ_G0015759.1 mouse_genomes_project 1 42784966 42791397 + MGP_C3HHeJ_P0019411 protein_coding protein_coding MGP_C3HHeJ_T0021268.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95025983 95027532 + MGP_C3HHeJ_P0021268 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0021269.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95026348 95216356 + MGP_C3HHeJ_P0021269 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0021270.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95027356 95031098 + D2hgdh protein_coding processed_transcript MGP_C3HHeJ_T0021271.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95027358 95041456 + MGP_C3HHeJ_P0021271 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0021272.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95027635 95031537 + D2hgdh protein_coding processed_transcript MGP_C3HHeJ_T0021273.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95030887 95041366 + MGP_C3HHeJ_P0021273 D2hgdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021274.1 MGP_C3HHeJ_G0016117.1 mouse_genomes_project 1 95195045 95203836 + MGP_C3HHeJ_P0021274 D2hgdh protein_coding protein_coding MGP_C3HHeJ_T0011854.1 MGP_C3HHeJ_G0009958.1 mouse_genomes_project 1 29309495 29310054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000374.1 MGP_C3HHeJ_G0000322.1 mouse_genomes_project 1 22951971 22955098 - TEC TEC MGP_C3HHeJ_T0020826.1 MGP_C3HHeJ_G0016022.1 mouse_genomes_project 1 87932623 87934799 + Akp3 protein_coding retained_intron MGP_C3HHeJ_T0020827.1 MGP_C3HHeJ_G0016022.1 mouse_genomes_project 1 87932658 87935563 + MGP_C3HHeJ_P0020827 Akp3 protein_coding protein_coding MGP_C3HHeJ_T0005837.1 MGP_C3HHeJ_G0004887.1 mouse_genomes_project 1 138856150 138858957 + A430034D21Rik lincRNA lincRNA MGP_C3HHeJ_T0019900.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231060 60301550 + MGP_C3HHeJ_P0019900 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019901.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231136 60301550 + MGP_C3HHeJ_P0019901 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019902.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231136 60297480 + MGP_C3HHeJ_P0019902 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019903.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231175 60299910 + MGP_C3HHeJ_P0019903 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019904.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231222 60265064 + Abi2 protein_coding retained_intron MGP_C3HHeJ_T0019905.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231236 60267684 + MGP_C3HHeJ_P0019905 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019906.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231244 60297550 + MGP_C3HHeJ_P0019906 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019907.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60231249 60254688 + Abi2 protein_coding retained_intron MGP_C3HHeJ_T0019908.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60257265 60298150 + MGP_C3HHeJ_P0019908 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019909.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60257389 60297312 + MGP_C3HHeJ_P0019909 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019910.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60257394 60297475 + MGP_C3HHeJ_P0019910 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0019911.1 MGP_C3HHeJ_G0015847.1 mouse_genomes_project 1 60259124 60297696 + MGP_C3HHeJ_P0019911 Abi2 protein_coding protein_coding MGP_C3HHeJ_T0012189.1 MGP_C3HHeJ_G0010293.1 mouse_genomes_project 1 156541445 156542457 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009438.1 MGP_C3HHeJ_G0007571.1 mouse_genomes_project 1 107211563 107211645 + Gm22426 miRNA miRNA MGP_C3HHeJ_T0099886.1 MGP_C3HHeJ_G0038080.1 mouse_genomes_project 1 137032499 137032625 + Gm25612 snoRNA snoRNA MGP_C3HHeJ_T0023157.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175148998 - Ndufs2 protein_coding retained_intron MGP_C3HHeJ_T0023158.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175160617 - Ndufs2 protein_coding retained_intron MGP_C3HHeJ_T0023159.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175150984 - Ndufs2 protein_coding processed_transcript MGP_C3HHeJ_T0023160.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175160617 - MGP_C3HHeJ_P0023160 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0023161.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175148306 175160617 - MGP_C3HHeJ_P0023161 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0023162.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175150600 175153500 - Ndufs2 protein_coding processed_transcript MGP_C3HHeJ_T0023163.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175151975 175164987 - MGP_C3HHeJ_P0023163 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0023164.1 MGP_C3HHeJ_G0016513.1 mouse_genomes_project 1 175152193 175165124 - MGP_C3HHeJ_P0023164 Ndufs2 protein_coding protein_coding MGP_C3HHeJ_T0022711.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164555333 164587810 - MGP_C3HHeJ_P0022711 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022712.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164561196 164587810 - MGP_C3HHeJ_P0022712 Zbtb37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022713.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164561202 164587795 - MGP_C3HHeJ_P0022713 Zbtb37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022714.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164570185 164587223 - MGP_C3HHeJ_P0022714 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022715.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164571689 164587809 - MGP_C3HHeJ_P0022715 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022716.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164571853 164587248 - MGP_C3HHeJ_P0022716 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0022717.1 MGP_C3HHeJ_G0016412.1 mouse_genomes_project 1 164585399 164587777 - MGP_C3HHeJ_P0022717 Zbtb37 protein_coding protein_coding MGP_C3HHeJ_T0002872.1 MGP_C3HHeJ_G0002703.1 mouse_genomes_project 1 168459009 168470340 - Gm32569 antisense antisense MGP_C3HHeJ_T0002873.1 MGP_C3HHeJ_G0002703.1 mouse_genomes_project 1 168459135 168558459 - Gm32569 antisense antisense MGP_C3HHeJ_T0019587.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53239163 53636259 - MGP_C3HHeJ_P0019587 Hecw2 protein_coding protein_coding MGP_C3HHeJ_T0019588.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53239169 53637245 - MGP_C3HHeJ_P0019588 Hecw2 protein_coding protein_coding MGP_C3HHeJ_T0019589.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53266530 53275010 - Hecw2 protein_coding processed_transcript MGP_C3HHeJ_T0019590.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53272855 53300314 - Hecw2 protein_coding processed_transcript MGP_C3HHeJ_T0019591.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53367187 53637245 - MGP_C3HHeJ_P0019591 Hecw2 protein_coding protein_coding MGP_C3HHeJ_T0019592.1 MGP_C3HHeJ_G0015793.1 mouse_genomes_project 1 53377971 53637379 - Hecw2 protein_coding retained_intron MGP_C3HHeJ_T0018836.1 MGP_C3HHeJ_G0015645.1 mouse_genomes_project 1 18423129 18427036 + Efhc1 protein_coding processed_transcript MGP_C3HHeJ_T0018837.1 MGP_C3HHeJ_G0015645.1 mouse_genomes_project 1 18423191 18467410 + MGP_C3HHeJ_P0018837 Efhc1 protein_coding protein_coding MGP_C3HHeJ_T0024040.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198255540 198266809 - MGP_C3HHeJ_P0024040 Sertad4 protein_coding protein_coding MGP_C3HHeJ_T0024041.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198255541 198262800 - MGP_C3HHeJ_P0024041 Sertad4 protein_coding protein_coding MGP_C3HHeJ_T0024042.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198258115 198262800 - MGP_C3HHeJ_P0024042 Sertad4 protein_coding protein_coding MGP_C3HHeJ_T0024043.1 MGP_C3HHeJ_G0016716.1 mouse_genomes_project 1 198265254 198266539 - Sertad4 protein_coding processed_transcript MGP_C3HHeJ_T0020615.1 MGP_C3HHeJ_G0015977.1 mouse_genomes_project 1 80631667 80648900 - MGP_C3HHeJ_P0020615 Fam124b protein_coding protein_coding MGP_C3HHeJ_T0020616.1 MGP_C3HHeJ_G0015977.1 mouse_genomes_project 1 80633287 80653430 - Fam124b protein_coding processed_transcript MGP_C3HHeJ_T0000538.1 MGP_C3HHeJ_G0000485.1 mouse_genomes_project 1 93113615 93116121 - TEC TEC MGP_C3HHeJ_T0020991.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642407 91652050 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020992.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642409 91650393 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020993.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642430 91644587 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020994.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642430 91649964 + Cops8 protein_coding processed_transcript MGP_C3HHeJ_T0020995.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642459 91651107 + MGP_C3HHeJ_P0020995 Cops8 protein_coding protein_coding MGP_C3HHeJ_T0020996.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91642481 91652267 + MGP_C3HHeJ_P0020996 Cops8 protein_coding protein_coding MGP_C3HHeJ_T0020997.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91648580 91650255 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0020998.1 MGP_C3HHeJ_G0016061.1 mouse_genomes_project 1 91650272 91651320 + Cops8 protein_coding retained_intron MGP_C3HHeJ_T0000521.1 MGP_C3HHeJ_G0000468.1 mouse_genomes_project 1 87593266 87596050 + TEC TEC MGP_C3HHeJ_T0020349.1 MGP_C3HHeJ_G0015935.1 mouse_genomes_project 1 75229351 75232538 - MGP_C3HHeJ_P0020349 Cryba2 protein_coding protein_coding MGP_C3HHeJ_T0020350.1 MGP_C3HHeJ_G0015935.1 mouse_genomes_project 1 75229952 75232287 - MGP_C3HHeJ_P0020350 Cryba2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011798.1 MGP_C3HHeJ_G0009902.1 mouse_genomes_project 1 9750089 9750978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020155.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789026 71864659 - MGP_C3HHeJ_P0020155 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020156.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789029 71864659 - MGP_C3HHeJ_P0020156 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020157.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789029 71864659 - MGP_C3HHeJ_P0020157 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020158.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789029 71864659 - MGP_C3HHeJ_P0020158 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020159.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789030 71864662 - MGP_C3HHeJ_P0020159 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020160.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789030 71864659 - MGP_C3HHeJ_P0020160 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020161.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789030 71864687 - MGP_C3HHeJ_P0020161 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020162.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71789032 71813102 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020163.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71790367 71794578 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020164.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71793603 71803903 - MGP_C3HHeJ_P0020164 Fn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020165.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71801894 71805911 - MGP_C3HHeJ_P0020165 Fn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020166.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71803921 71806379 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020167.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71807631 71829134 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020168.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71834244 71847016 - MGP_C3HHeJ_P0020168 Fn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020169.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71848552 71864648 - MGP_C3HHeJ_P0020169 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0020170.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71850204 71864659 - Fn1 protein_coding retained_intron MGP_C3HHeJ_T0020171.1 MGP_C3HHeJ_G0015896.1 mouse_genomes_project 1 71851370 71864659 - MGP_C3HHeJ_P0020171 Fn1 protein_coding protein_coding MGP_C3HHeJ_T0002786.1 MGP_C3HHeJ_G0002638.1 mouse_genomes_project 1 92376357 92394361 - Gm17090 antisense antisense MGP_C3HHeJ_T0023685.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186183047 186202291 + MGP_C3HHeJ_P0023685 Cnih4 protein_coding protein_coding MGP_C3HHeJ_T0023686.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186183109 186202291 + MGP_C3HHeJ_P0023686 Cnih4 protein_coding protein_coding MGP_C3HHeJ_T0023687.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186186854 186199678 + Cnih4 protein_coding processed_transcript MGP_C3HHeJ_T0023688.1 MGP_C3HHeJ_G0016645.1 mouse_genomes_project 1 186187836 186199646 + Cnih4 protein_coding retained_intron MGP_C3HHeJ_T0020304.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921244 74929617 - MGP_C3HHeJ_P0020304 Rnf25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020305.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921244 74929642 - MGP_C3HHeJ_P0020305 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020306.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921249 74929622 - MGP_C3HHeJ_P0020306 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020307.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74921718 74922298 - Rnf25 protein_coding retained_intron MGP_C3HHeJ_T0020308.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74922705 74928809 - MGP_C3HHeJ_P0020308 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020309.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74923381 74928844 - MGP_C3HHeJ_P0020309 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020310.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74925631 74926014 - Rnf25 protein_coding retained_intron MGP_C3HHeJ_T0020311.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74925779 74929590 - MGP_C3HHeJ_P0020311 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0020312.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74925966 74929639 - Rnf25 protein_coding retained_intron MGP_C3HHeJ_T0020313.1 MGP_C3HHeJ_G0015926.1 mouse_genomes_project 1 74926149 74929610 - MGP_C3HHeJ_P0020313 Rnf25 protein_coding protein_coding MGP_C3HHeJ_T0022940.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169280420 169330469 - MGP_C3HHeJ_P0022940 Mpzl1 protein_coding protein_coding MGP_C3HHeJ_T0022941.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169281558 169292911 - MGP_C3HHeJ_P0022941 Mpzl1 protein_coding protein_coding MGP_C3HHeJ_T0022942.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169281597 169330589 - MGP_C3HHeJ_P0022942 Mpzl1 protein_coding protein_coding MGP_C3HHeJ_T0022943.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169288930 169297732 - Mpzl1 protein_coding processed_transcript MGP_C3HHeJ_T0022944.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169291343 169292867 - Mpzl1 protein_coding retained_intron MGP_C3HHeJ_T0022945.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169292757 169306310 - Mpzl1 protein_coding processed_transcript MGP_C3HHeJ_T0022946.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169292825 169330518 - MGP_C3HHeJ_P0022946 Mpzl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022947.1 MGP_C3HHeJ_G0016461.1 mouse_genomes_project 1 169295551 169330162 - Mpzl1 protein_coding processed_transcript MGP_C3HHeJ_T0099842.1 MGP_C3HHeJ_G0038036.1 mouse_genomes_project 1 42560999 42561124 + Gm26352 snoRNA snoRNA MGP_C3HHeJ_T0022866.1 MGP_C3HHeJ_G0016442.1 mouse_genomes_project 1 167616983 167619309 + MGP_C3HHeJ_P0022866 Mettl18 protein_coding protein_coding MGP_C3HHeJ_T0022867.1 MGP_C3HHeJ_G0016442.1 mouse_genomes_project 1 167616983 167619309 + MGP_C3HHeJ_P0022867 Mettl18 protein_coding protein_coding MGP_C3HHeJ_T0005689.1 MGP_C3HHeJ_G0004768.1 mouse_genomes_project 1 64539619 64547872 + Gm28982 lincRNA lincRNA MGP_C3HHeJ_T0002764.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73248890 73291183 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002765.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73281857 73291966 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002766.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73282202 73291957 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002767.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73289012 73291958 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0002768.1 MGP_C3HHeJ_G0002621.1 mouse_genomes_project 1 73291027 73291966 + 1700027A15Rik antisense antisense MGP_C3HHeJ_T0012057.1 MGP_C3HHeJ_G0010161.1 mouse_genomes_project 1 99619862 99620269 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019703.1 MGP_C3HHeJ_G0015814.1 mouse_genomes_project 1 57592708 57624118 + MGP_C3HHeJ_P0019703 Sgol2a protein_coding protein_coding MGP_C3HHeJ_T0019704.1 MGP_C3HHeJ_G0015814.1 mouse_genomes_project 1 57620934 57624117 + Sgol2a protein_coding retained_intron MGP_C3HHeJ_T0022178.1 MGP_C3HHeJ_G0016315.1 mouse_genomes_project 1 141000275 141016003 + MGP_C3HHeJ_P0022178 Atp6v1g3 protein_coding protein_coding MGP_C3HHeJ_T0005703.1 MGP_C3HHeJ_G0004778.1 mouse_genomes_project 1 72212690 72268787 - 4930556G22Rik lincRNA lincRNA MGP_C3HHeJ_T0020950.1 MGP_C3HHeJ_G0016046.1 mouse_genomes_project 1 89100644 89122337 + MGP_C3HHeJ_P0020950 Ugt1a2 protein_coding protein_coding MGP_C3HHeJ_T0011988.1 MGP_C3HHeJ_G0010092.1 mouse_genomes_project 1 65375057 65375379 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023427.1 MGP_C3HHeJ_G0016585.1 mouse_genomes_project 1 178672377 178678723 + MGP_C3HHeJ_P0023427 Olfr427 protein_coding protein_coding MGP_C3HHeJ_T0000572.1 MGP_C3HHeJ_G0000519.1 mouse_genomes_project 1 125714877 125718639 - TEC TEC MGP_C3HHeJ_T0099898.1 MGP_C3HHeJ_G0038092.1 mouse_genomes_project 1 164588354 164588434 + Gm26224 snoRNA snoRNA MGP_C3HHeJ_T0023847.1 MGP_C3HHeJ_G0016679.1 mouse_genomes_project 1 191273300 191297704 - MGP_C3HHeJ_P0023847 Lyplal1 protein_coding protein_coding MGP_C3HHeJ_T0023848.1 MGP_C3HHeJ_G0016679.1 mouse_genomes_project 1 191274102 191297682 - Lyplal1 protein_coding processed_transcript MGP_C3HHeJ_T0005729.1 MGP_C3HHeJ_G0004797.1 mouse_genomes_project 1 79240388 79241783 + Gm29187 lincRNA lincRNA MGP_C3HHeJ_T0019066.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34597498 34636112 - MGP_C3HHeJ_P0019066 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019067.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34597498 34636088 - MGP_C3HHeJ_P0019067 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019068.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34599341 34636102 - MGP_C3HHeJ_P0019068 Kansl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019069.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34599341 34634946 - MGP_C3HHeJ_P0019069 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019070.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34620413 34634973 - MGP_C3HHeJ_P0019070 Kansl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019071.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34623817 34636086 - MGP_C3HHeJ_P0019071 Kansl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019072.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34632557 34634973 - MGP_C3HHeJ_P0019072 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0019073.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34632840 34636088 - Kansl3 protein_coding retained_intron MGP_C3HHeJ_T0019074.1 MGP_C3HHeJ_G0015692.1 mouse_genomes_project 1 34634897 34636033 - MGP_C3HHeJ_P0019074 Kansl3 protein_coding protein_coding MGP_C3HHeJ_T0022207.1 MGP_C3HHeJ_G0016321.1 mouse_genomes_project 1 142161808 142181378 + MGP_C3HHeJ_P0022207 Zbtb41 protein_coding protein_coding MGP_C3HHeJ_T0022208.1 MGP_C3HHeJ_G0016321.1 mouse_genomes_project 1 142161902 142192526 + MGP_C3HHeJ_P0022208 Zbtb41 protein_coding protein_coding MGP_C3HHeJ_T0022209.1 MGP_C3HHeJ_G0016321.1 mouse_genomes_project 1 142163174 142188704 + MGP_C3HHeJ_P0022209 Zbtb41 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023740.1 MGP_C3HHeJ_G0016655.1 mouse_genomes_project 1 187523397 187577574 + MGP_C3HHeJ_P0023740 Trp53bp2 protein_coding protein_coding MGP_C3HHeJ_T0023741.1 MGP_C3HHeJ_G0016655.1 mouse_genomes_project 1 187556336 187576924 + Trp53bp2 protein_coding retained_intron MGP_C3HHeJ_T0023742.1 MGP_C3HHeJ_G0016655.1 mouse_genomes_project 1 187558992 187563829 + MGP_C3HHeJ_P0023742 Trp53bp2 protein_coding protein_coding MGP_C3HHeJ_T0000493.1 MGP_C3HHeJ_G0000440.1 mouse_genomes_project 1 78766311 78767120 + TEC TEC MGP_C3HHeJ_T0009389.1 MGP_C3HHeJ_G0007522.1 mouse_genomes_project 1 32290557 32290630 + Mir6896 miRNA miRNA MGP_C3HHeJ_T0020592.1 MGP_C3HHeJ_G0015971.1 mouse_genomes_project 1 79235873 79239164 + MGP_C3HHeJ_P0020592 Kcne4 protein_coding protein_coding MGP_C3HHeJ_T0020593.1 MGP_C3HHeJ_G0015971.1 mouse_genomes_project 1 79236042 79239164 + MGP_C3HHeJ_P0020593 Kcne4 protein_coding protein_coding MGP_C3HHeJ_T0012151.1 MGP_C3HHeJ_G0010255.1 mouse_genomes_project 1 141102917 141103068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020314.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929689 74964427 + MGP_C3HHeJ_P0020314 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020315.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929724 74964424 + Stk36 protein_coding retained_intron MGP_C3HHeJ_T0020316.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929747 74961633 + MGP_C3HHeJ_P0020316 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020317.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929758 74934391 + MGP_C3HHeJ_P0020317 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020318.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74929883 74963576 + MGP_C3HHeJ_P0020318 Stk36 protein_coding protein_coding MGP_C3HHeJ_T0020319.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74932075 74937266 + MGP_C3HHeJ_P0020319 Stk36 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020320.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74948267 74951829 + Stk36 protein_coding retained_intron MGP_C3HHeJ_T0020321.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74948744 74963619 + Stk36 protein_coding processed_transcript MGP_C3HHeJ_T0020322.1 MGP_C3HHeJ_G0015927.1 mouse_genomes_project 1 74952382 74964427 + Stk36 protein_coding retained_intron MGP_C3HHeJ_T0019547.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52082812 52086772 + Hibch protein_coding retained_intron MGP_C3HHeJ_T0019548.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52082927 52120985 + Hibch protein_coding retained_intron MGP_C3HHeJ_T0019549.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52082993 52155750 + MGP_C3HHeJ_P0019549 Hibch protein_coding protein_coding MGP_C3HHeJ_T0019550.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52101798 52135528 + Hibch protein_coding processed_transcript MGP_C3HHeJ_T0019551.1 MGP_C3HHeJ_G0015783.1 mouse_genomes_project 1 52136840 52149198 + Hibch protein_coding retained_intron MGP_C3HHeJ_T0000362.1 MGP_C3HHeJ_G0000312.1 mouse_genomes_project 1 14015139 14018119 + TEC TEC MGP_C3HHeJ_T0012237.1 MGP_C3HHeJ_G0010341.1 mouse_genomes_project 1 181270026 181270684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005812.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140849 123174484 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0005813.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140915 123171214 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0005814.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140918 123234627 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0005815.1 MGP_C3HHeJ_G0004866.1 mouse_genomes_project 1 123140973 123142377 + Celrr lincRNA lincRNA MGP_C3HHeJ_T0000596.1 MGP_C3HHeJ_G0000543.1 mouse_genomes_project 1 133474393 133480262 - TEC TEC MGP_C3HHeJ_T0005728.1 MGP_C3HHeJ_G0004796.1 mouse_genomes_project 1 79211813 79675312 - lincRNA lincRNA MGP_C3HHeJ_T0099908.1 MGP_C3HHeJ_G0038102.1 mouse_genomes_project 1 166652364 166652498 - Gm22671 snoRNA snoRNA MGP_C3HHeJ_T0023032.1 MGP_C3HHeJ_G0016480.1 mouse_genomes_project 1 171207574 171228546 - MGP_C3HHeJ_P0023032 Lrrc52 protein_coding protein_coding MGP_C3HHeJ_T0021802.1 MGP_C3HHeJ_G0016238.1 mouse_genomes_project 1 134737604 134746335 + MGP_C3HHeJ_P0021802 Klhdc8a protein_coding protein_coding MGP_C3HHeJ_T0002845.1 MGP_C3HHeJ_G0002682.1 mouse_genomes_project 1 154512601 154517047 - Gm10138 antisense antisense MGP_C3HHeJ_T0002846.1 MGP_C3HHeJ_G0002682.1 mouse_genomes_project 1 154515702 154518202 - Gm10138 antisense antisense MGP_C3HHeJ_T0002847.1 MGP_C3HHeJ_G0002682.1 mouse_genomes_project 1 154517333 154517707 - Gm10138 antisense pseudogene MGP_C3HHeJ_T0005771.1 MGP_C3HHeJ_G0004834.1 mouse_genomes_project 1 96021829 96027199 + 4930440C22Rik lincRNA lincRNA MGP_C3HHeJ_T0005772.1 MGP_C3HHeJ_G0004834.1 mouse_genomes_project 1 96022188 96027219 + 4930440C22Rik lincRNA lincRNA MGP_C3HHeJ_T0099855.1 MGP_C3HHeJ_G0038049.1 mouse_genomes_project 1 63038059 63038094 + Gm26457 snoRNA snoRNA MGP_C3HHeJ_T0012105.1 MGP_C3HHeJ_G0010209.1 mouse_genomes_project 1 119589845 119590319 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023879.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193511450 193606519 + protein_coding retained_intron MGP_C3HHeJ_T0023880.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193511462 193702162 + protein_coding retained_intron MGP_C3HHeJ_T0023881.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193512461 194226625 + MGP_C3HHeJ_P0023881 protein_coding protein_coding MGP_C3HHeJ_T0023882.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 193787733 193930400 + protein_coding retained_intron MGP_C3HHeJ_T0023883.1 MGP_C3HHeJ_G0016686.1 mouse_genomes_project 1 194215383 194226549 + MGP_C3HHeJ_P0023883 protein_coding protein_coding MGP_C3HHeJ_T0002716.1 MGP_C3HHeJ_G0002585.1 mouse_genomes_project 1 35971919 35973033 + 4930556I23Rik antisense antisense MGP_C3HHeJ_T0021245.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94896455 94952705 - MGP_C3HHeJ_P0021245 Thap4 protein_coding protein_coding MGP_C3HHeJ_T0021246.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94901668 94927670 - MGP_C3HHeJ_P0021246 Thap4 protein_coding protein_coding MGP_C3HHeJ_T0021247.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94901671 94952789 - MGP_C3HHeJ_P0021247 Thap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021248.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94901672 94911087 - MGP_C3HHeJ_P0021248 Thap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021249.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94910884 94947420 - MGP_C3HHeJ_P0021249 Thap4 protein_coding protein_coding MGP_C3HHeJ_T0021250.1 MGP_C3HHeJ_G0016113.1 mouse_genomes_project 1 94920370 94952575 - Thap4 protein_coding retained_intron MGP_C3HHeJ_T0012259.1 MGP_C3HHeJ_G0010363.1 mouse_genomes_project 1 192221782 192222380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011171.1 MGP_C3HHeJ_G0009304.1 mouse_genomes_project 1 200779973 200780071 - Gm27940 misc_RNA misc_RNA MGP_C3HHeJ_T0022785.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166124934 166141359 - MGP_C3HHeJ_P0022785 Mettl13 protein_coding protein_coding MGP_C3HHeJ_T0022786.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166126486 166141330 - MGP_C3HHeJ_P0022786 Mettl13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022787.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166128649 166137170 - MGP_C3HHeJ_P0022787 Mettl13 protein_coding protein_coding MGP_C3HHeJ_T0022788.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166129950 166141064 - Mettl13 protein_coding processed_transcript MGP_C3HHeJ_T0022789.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166131727 166139335 - MGP_C3HHeJ_P0022789 Mettl13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022790.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166134256 166141346 - Mettl13 protein_coding retained_intron MGP_C3HHeJ_T0022791.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166136443 166141336 - Mettl13 protein_coding retained_intron MGP_C3HHeJ_T0022792.1 MGP_C3HHeJ_G0016425.1 mouse_genomes_project 1 166139635 166141337 - Mettl13 protein_coding retained_intron MGP_C3HHeJ_T0022851.1 MGP_C3HHeJ_G0016439.1 mouse_genomes_project 1 167392765 167533618 + MGP_C3HHeJ_P0022851 Kifap3 protein_coding protein_coding MGP_C3HHeJ_T0022852.1 MGP_C3HHeJ_G0016439.1 mouse_genomes_project 1 167392765 167533618 + MGP_C3HHeJ_P0022852 Kifap3 protein_coding protein_coding MGP_C3HHeJ_T0000628.1 MGP_C3HHeJ_G0000573.1 mouse_genomes_project 1 141294297 141297957 - TEC TEC MGP_C3HHeJ_T0000359.1 MGP_C3HHeJ_G0000309.1 mouse_genomes_project 1 12691856 12693389 + TEC TEC MGP_C3HHeJ_T0011819.1 MGP_C3HHeJ_G0009923.1 mouse_genomes_project 1 16816955 16819199 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101569.1 MGP_C3HHeJ_G0039535.1 mouse_genomes_project 1 93747589 93747701 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021723.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133684719 133925256 - MGP_C3HHeJ_P0021723 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021724.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133688826 133699922 - MGP_C3HHeJ_P0021724 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021725.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694456 133729804 - Srgap2 protein_coding processed_transcript MGP_C3HHeJ_T0021726.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694686 133925256 - MGP_C3HHeJ_P0021726 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021727.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694687 133703781 - Srgap2 protein_coding processed_transcript MGP_C3HHeJ_T0021728.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133694689 133741210 - MGP_C3HHeJ_P0021728 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021729.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133695224 133695849 - Srgap2 protein_coding processed_transcript MGP_C3HHeJ_T0021730.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133696109 133763705 - MGP_C3HHeJ_P0021730 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021731.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133712854 133728997 - Srgap2 protein_coding retained_intron MGP_C3HHeJ_T0021732.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133761666 133925261 - Srgap2 protein_coding retained_intron MGP_C3HHeJ_T0021733.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133805766 133912149 - MGP_C3HHeJ_P0021733 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0021734.1 MGP_C3HHeJ_G0016222.1 mouse_genomes_project 1 133831602 133902419 - MGP_C3HHeJ_P0021734 Srgap2 protein_coding protein_coding MGP_C3HHeJ_T0005674.1 MGP_C3HHeJ_G0004756.1 mouse_genomes_project 1 61140010 61145852 + Gm11587 lincRNA lincRNA MGP_C3HHeJ_T0101564.1 MGP_C3HHeJ_G0039530.1 mouse_genomes_project 1 89048164 89048948 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098665.1 MGP_C3HHeJ_G0036859.1 mouse_genomes_project 1 171104847 171104954 + Gm24182 snRNA snRNA MGP_C3HHeJ_T0009420.1 MGP_C3HHeJ_G0007553.1 mouse_genomes_project 1 82651710 82651814 + Mir6344 miRNA miRNA MGP_C3HHeJ_T0022461.1 MGP_C3HHeJ_G0016370.1 mouse_genomes_project 1 157125292 157190428 - MGP_C3HHeJ_P0022461 Teddm2 protein_coding protein_coding MGP_C3HHeJ_T0022462.1 MGP_C3HHeJ_G0016370.1 mouse_genomes_project 1 157125292 157126946 - MGP_C3HHeJ_P0022462 Teddm2 protein_coding protein_coding MGP_C3HHeJ_T0022464.1 MGP_C3HHeJ_G0016370.1 mouse_genomes_project 1 157187289 157190448 - Teddm2 protein_coding retained_intron MGP_C3HHeJ_T0023263.1 MGP_C3HHeJ_G0016534.1 mouse_genomes_project 1 176050695 176098292 + MGP_C3HHeJ_P0023263 Slamf1 protein_coding protein_coding MGP_C3HHeJ_T0023264.1 MGP_C3HHeJ_G0016534.1 mouse_genomes_project 1 176050723 176092946 + Slamf1 protein_coding retained_intron MGP_C3HHeJ_T0023748.1 MGP_C3HHeJ_G0016657.1 mouse_genomes_project 1 187688052 187733660 + Capn8 protein_coding processed_transcript MGP_C3HHeJ_T0023749.1 MGP_C3HHeJ_G0016657.1 mouse_genomes_project 1 187688057 187759410 + MGP_C3HHeJ_P0023749 Capn8 protein_coding protein_coding MGP_C3HHeJ_T0023750.1 MGP_C3HHeJ_G0016657.1 mouse_genomes_project 1 187688083 187759298 + MGP_C3HHeJ_P0023750 Capn8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009468.1 MGP_C3HHeJ_G0007601.1 mouse_genomes_project 1 181404541 181404640 - Mir350 miRNA miRNA MGP_C3HHeJ_T0005851.1 MGP_C3HHeJ_G0004897.1 mouse_genomes_project 1 140676543 140679947 + A430106G13Rik lincRNA lincRNA MGP_C3HHeJ_T0011833.1 MGP_C3HHeJ_G0009937.1 mouse_genomes_project 1 21750914 21751781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097953.1 MGP_C3HHeJ_G0036165.1 mouse_genomes_project 1 29147584 29147722 - Gm27362 rRNA rRNA MGP_C3HHeJ_T0009478.1 MGP_C3HHeJ_G0007611.1 mouse_genomes_project 1 198940988 198941056 - Mir205 miRNA miRNA MGP_C3HHeJ_T0012262.1 MGP_C3HHeJ_G0010366.1 mouse_genomes_project 1 194557421 194557802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000383.1 MGP_C3HHeJ_G0000331.1 mouse_genomes_project 1 23350963 23354958 - TEC TEC MGP_C3HHeJ_T0000410.1 MGP_C3HHeJ_G0000357.1 mouse_genomes_project 1 32415540 32417765 + TEC TEC MGP_C3HHeJ_T0000754.1 MGP_C3HHeJ_G0000697.1 mouse_genomes_project 1 191926259 191928138 - TEC TEC MGP_C3HHeJ_T0099876.1 MGP_C3HHeJ_G0038070.1 mouse_genomes_project 1 111453294 111453424 - Gm22159 snoRNA snoRNA MGP_C3HHeJ_T0021114.1 MGP_C3HHeJ_G0016083.1 mouse_genomes_project 1 93581682 93619220 - MGP_C3HHeJ_P0021114 protein_coding protein_coding MGP_C3HHeJ_T0021115.1 MGP_C3HHeJ_G0016083.1 mouse_genomes_project 1 93613741 93653213 - MGP_C3HHeJ_P0021115 protein_coding protein_coding MGP_C3HHeJ_T0009402.1 MGP_C3HHeJ_G0007535.1 mouse_genomes_project 1 53283225 53283297 + Mir7681 miRNA miRNA MGP_C3HHeJ_T0012198.1 MGP_C3HHeJ_G0010302.1 mouse_genomes_project 1 160767821 160768223 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023836.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539232 190588101 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023837.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539232 190606541 + MGP_C3HHeJ_P0023837 Eprs protein_coding protein_coding MGP_C3HHeJ_T0023838.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539246 190543123 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023839.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539267 190606540 + MGP_C3HHeJ_P0023839 Eprs protein_coding unknown_likely_coding MGP_C3HHeJ_T0023840.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539320 190553069 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023841.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190539372 190557935 + MGP_C3HHeJ_P0023841 Eprs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023842.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190541626 190549420 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023843.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190543739 190554981 + MGP_C3HHeJ_P0023843 Eprs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023844.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190543746 190550440 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0023845.1 MGP_C3HHeJ_G0016677.1 mouse_genomes_project 1 190577791 190581447 + Eprs protein_coding retained_intron MGP_C3HHeJ_T0000686.1 MGP_C3HHeJ_G0000631.1 mouse_genomes_project 1 164303541 164307569 + TEC TEC MGP_C3HHeJ_T0005739.1 MGP_C3HHeJ_G0004804.1 mouse_genomes_project 1 84246782 84510692 - 4933436I20Rik lincRNA lincRNA MGP_C3HHeJ_T0005740.1 MGP_C3HHeJ_G0004804.1 mouse_genomes_project 1 84443094 84510718 - 4933436I20Rik lincRNA lincRNA MGP_C3HHeJ_T0005948.1 MGP_C3HHeJ_G0004974.1 mouse_genomes_project 1 188823900 188886332 + Gm34068 lincRNA lincRNA MGP_C3HHeJ_T0019016.1 MGP_C3HHeJ_G0015683.1 mouse_genomes_project 1 32738909 32753372 + MGP_C3HHeJ_P0019016 Cfc1 protein_coding protein_coding MGP_C3HHeJ_T0021746.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134149421 134176883 + MGP_C3HHeJ_P0021746 Slc26a9 protein_coding protein_coding MGP_C3HHeJ_T0021747.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134149437 134169386 + MGP_C3HHeJ_P0021747 Slc26a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021748.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134155782 134156487 + Slc26a9 protein_coding retained_intron MGP_C3HHeJ_T0021749.1 MGP_C3HHeJ_G0016227.1 mouse_genomes_project 1 134155890 134159387 + MGP_C3HHeJ_P0021749 Slc26a9 protein_coding protein_coding MGP_C3HHeJ_T0000746.1 MGP_C3HHeJ_G0000689.1 mouse_genomes_project 1 187609942 187614084 + TEC TEC MGP_C3HHeJ_T0009428.1 MGP_C3HHeJ_G0007561.1 mouse_genomes_project 1 88874344 88874454 + Gm25198 miRNA miRNA MGP_C3HHeJ_T0000637.1 MGP_C3HHeJ_G0000582.1 mouse_genomes_project 1 144436994 144438266 + TEC TEC MGP_C3HHeJ_T0002893.1 MGP_C3HHeJ_G0002720.1 mouse_genomes_project 1 181386738 181391097 + Gm36992 antisense antisense MGP_C3HHeJ_T0002725.1 MGP_C3HHeJ_G0002592.1 mouse_genomes_project 1 38092973 38100179 + D930019O06Rik antisense antisense MGP_C3HHeJ_T0022278.1 MGP_C3HHeJ_G0016336.1 mouse_genomes_project 1 147447486 147499341 - Rgs21 protein_coding processed_transcript MGP_C3HHeJ_T0022279.1 MGP_C3HHeJ_G0016336.1 mouse_genomes_project 1 147449437 147483194 - MGP_C3HHeJ_P0022279 Rgs21 protein_coding protein_coding MGP_C3HHeJ_T0018838.1 MGP_C3HHeJ_G0015646.1 mouse_genomes_project 1 18472883 18555526 - MGP_C3HHeJ_P0018838 Tram2 protein_coding protein_coding MGP_C3HHeJ_T0018839.1 MGP_C3HHeJ_G0015646.1 mouse_genomes_project 1 18480898 18517724 - Tram2 protein_coding processed_transcript MGP_C3HHeJ_T0005955.1 MGP_C3HHeJ_G0004977.1 mouse_genomes_project 1 189488184 189494130 - Gm37712 lincRNA lincRNA MGP_C3HHeJ_T0098660.1 MGP_C3HHeJ_G0036854.1 mouse_genomes_project 1 152805739 152805845 - Gm23535 snRNA snRNA MGP_C3HHeJ_T0002843.1 MGP_C3HHeJ_G0002681.1 mouse_genomes_project 1 153755960 153803148 + antisense antisense MGP_C3HHeJ_T0002844.1 MGP_C3HHeJ_G0002681.1 mouse_genomes_project 1 153755993 153923085 + antisense antisense MGP_C3HHeJ_T0097956.1 MGP_C3HHeJ_G0036168.1 mouse_genomes_project 1 74045836 74045962 + Gm25329 rRNA rRNA MGP_C3HHeJ_T0016792.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99381561 99386164 - B230216N24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016793.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99381572 99400690 - B230216N24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0016794.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99382162 99400724 - B230216N24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0016795.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99382313 99410522 - B230216N24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0016796.1 MGP_C3HHeJ_G0014868.1 mouse_genomes_project 1 99398747 99400685 - B230216N24Rik processed_transcript retained_intron MGP_C3HHeJ_T0000639.1 MGP_C3HHeJ_G0000584.1 mouse_genomes_project 1 148275609 148278863 - TEC TEC MGP_C3HHeJ_T0000591.1 MGP_C3HHeJ_G0000538.1 mouse_genomes_project 1 132156915 132159142 + TEC TEC MGP_C3HHeJ_T0022471.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157706357 158050618 - MGP_C3HHeJ_P0022471 Cacna1e protein_coding protein_coding MGP_C3HHeJ_T0022472.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157708145 158050182 - MGP_C3HHeJ_P0022472 Cacna1e protein_coding protein_coding MGP_C3HHeJ_T0022473.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157710325 158050181 - MGP_C3HHeJ_P0022473 Cacna1e protein_coding unknown_likely_coding MGP_C3HHeJ_T0022474.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157788189 157795802 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0022475.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 157800180 158144014 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0022476.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 158023389 158212725 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0022477.1 MGP_C3HHeJ_G0016374.1 mouse_genomes_project 1 158210389 158212248 - Cacna1e protein_coding retained_intron MGP_C3HHeJ_T0002781.1 MGP_C3HHeJ_G0002633.1 mouse_genomes_project 1 87010218 87011083 - Gm28626 antisense antisense MGP_C3HHeJ_T0099861.1 MGP_C3HHeJ_G0038055.1 mouse_genomes_project 1 84526155 84526279 + Gm24555 snoRNA snoRNA MGP_C3HHeJ_T0022219.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939741 143050500 - MGP_C3HHeJ_P0022219 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022222.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939746 143050689 - MGP_C3HHeJ_P0022222 protein_coding protein_coding MGP_C3HHeJ_T0022223.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939749 143050598 - MGP_C3HHeJ_P0022223 protein_coding protein_coding MGP_C3HHeJ_T0022224.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939750 143050689 - MGP_C3HHeJ_P0022224 protein_coding protein_coding MGP_C3HHeJ_T0022225.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939753 143005702 - MGP_C3HHeJ_P0022225 protein_coding protein_coding MGP_C3HHeJ_T0022227.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 142939770 143050600 - MGP_C3HHeJ_P0022227 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022228.1 MGP_C3HHeJ_G0016325.1 mouse_genomes_project 1 143050411 143051042 - protein_coding retained_intron MGP_C3HHeJ_T0099872.1 MGP_C3HHeJ_G0038066.1 mouse_genomes_project 1 104515600 104515734 - Gm22034 snoRNA snoRNA MGP_C3HHeJ_T0000462.1 MGP_C3HHeJ_G0000409.1 mouse_genomes_project 1 61503942 61512445 + TEC TEC MGP_C3HHeJ_T0002727.1 MGP_C3HHeJ_G0002594.1 mouse_genomes_project 1 39038020 39047765 - Gm35801 antisense antisense MGP_C3HHeJ_T0002728.1 MGP_C3HHeJ_G0002594.1 mouse_genomes_project 1 39038040 39047751 - Gm35801 antisense antisense MGP_C3HHeJ_T0011169.1 MGP_C3HHeJ_G0009302.1 mouse_genomes_project 1 198412684 198412973 - Gm23583 misc_RNA misc_RNA MGP_C3HHeJ_T0098631.1 MGP_C3HHeJ_G0036825.1 mouse_genomes_project 1 78267164 78267328 - Gm26263 snRNA snRNA MGP_C3HHeJ_T0011844.1 MGP_C3HHeJ_G0009948.1 mouse_genomes_project 1 26430542 26430785 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002898.1 MGP_C3HHeJ_G0002724.1 mouse_genomes_project 1 183195676 183198740 - antisense antisense MGP_C3HHeJ_T0011784.1 MGP_C3HHeJ_G0009888.1 mouse_genomes_project 1 6514184 6516098 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005770.1 MGP_C3HHeJ_G0004833.1 mouse_genomes_project 1 94291702 94292886 - Gm28086 lincRNA lincRNA MGP_C3HHeJ_T0000580.1 MGP_C3HHeJ_G0000527.1 mouse_genomes_project 1 129498088 129502849 + TEC TEC MGP_C3HHeJ_T0022799.1 MGP_C3HHeJ_G0016428.1 mouse_genomes_project 1 166244795 166254379 - 7420461P10Rik protein_coding processed_transcript MGP_C3HHeJ_T0022800.1 MGP_C3HHeJ_G0016428.1 mouse_genomes_project 1 166244795 166255644 - MGP_C3HHeJ_P0022800 7420461P10Rik protein_coding protein_coding MGP_C3HHeJ_T0022801.1 MGP_C3HHeJ_G0016428.1 mouse_genomes_project 1 166244805 166255757 - MGP_C3HHeJ_P0022801 7420461P10Rik protein_coding protein_coding MGP_C3HHeJ_T0099854.1 MGP_C3HHeJ_G0038048.1 mouse_genomes_project 1 63038050 63038128 + Gm26457 snoRNA snoRNA MGP_C3HHeJ_T0022235.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146516242 146624284 - MGP_C3HHeJ_P0022235 Cdc73 protein_coding protein_coding MGP_C3HHeJ_T0022236.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146523597 146559081 - Cdc73 protein_coding processed_transcript MGP_C3HHeJ_T0022237.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146552360 146555087 - Cdc73 protein_coding retained_intron MGP_C3HHeJ_T0022238.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146557967 146561029 - Cdc73 protein_coding retained_intron MGP_C3HHeJ_T0022240.1 MGP_C3HHeJ_G0016328.1 mouse_genomes_project 1 146613132 146623592 - MGP_C3HHeJ_P0022240 Cdc73 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021290.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99069851 99078973 - Ppip5k2 protein_coding retained_intron MGP_C3HHeJ_T0021291.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99069851 99134131 - MGP_C3HHeJ_P0021291 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021292.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99069851 99134131 - MGP_C3HHeJ_P0021292 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021293.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99071468 99125263 - MGP_C3HHeJ_P0021293 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021294.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99075257 99080370 - MGP_C3HHeJ_P0021294 Ppip5k2 protein_coding protein_coding MGP_C3HHeJ_T0021295.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99082608 99085172 - Ppip5k2 protein_coding retained_intron MGP_C3HHeJ_T0021296.1 MGP_C3HHeJ_G0016126.1 mouse_genomes_project 1 99105939 99109898 - Ppip5k2 protein_coding retained_intron MGP_C3HHeJ_T0019720.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58001733 58019339 + MGP_C3HHeJ_P0019720 Bzw1 protein_coding protein_coding MGP_C3HHeJ_T0019721.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58001893 58011774 + MGP_C3HHeJ_P0019721 Bzw1 protein_coding protein_coding MGP_C3HHeJ_T0019722.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58001901 58017468 + MGP_C3HHeJ_P0019722 Bzw1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019723.1 MGP_C3HHeJ_G0015819.1 mouse_genomes_project 1 58002239 58017007 + MGP_C3HHeJ_P0019723 Bzw1 protein_coding protein_coding MGP_C3HHeJ_T0012231.1 MGP_C3HHeJ_G0010335.1 mouse_genomes_project 1 175557141 175557311 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000700.1 MGP_C3HHeJ_G0000645.1 mouse_genomes_project 1 169084415 169085750 + TEC TEC MGP_C3HHeJ_T0009410.1 MGP_C3HHeJ_G0007543.1 mouse_genomes_project 1 64307133 64307202 + Gm25748 miRNA miRNA MGP_C3HHeJ_T0021266.1 MGP_C3HHeJ_G0016116.1 mouse_genomes_project 1 95004960 95023176 + MGP_C3HHeJ_P0021266 Ing5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021267.1 MGP_C3HHeJ_G0016116.1 mouse_genomes_project 1 95004980 95023181 + MGP_C3HHeJ_P0021267 Ing5 protein_coding protein_coding MGP_C3HHeJ_T0023732.1 MGP_C3HHeJ_G0016653.1 mouse_genomes_project 1 187382815 187389848 - MGP_C3HHeJ_P0023732 Degs1 protein_coding protein_coding MGP_C3HHeJ_T0023733.1 MGP_C3HHeJ_G0016653.1 mouse_genomes_project 1 187385540 187389848 - Degs1 protein_coding retained_intron MGP_C3HHeJ_T0023734.1 MGP_C3HHeJ_G0016653.1 mouse_genomes_project 1 187386047 187389268 - MGP_C3HHeJ_P0023734 Degs1 protein_coding protein_coding MGP_C3HHeJ_T0021322.1 MGP_C3HHeJ_G0016130.1 mouse_genomes_project 1 101208511 101947367 + MGP_C3HHeJ_P0021322 Cntnap5b protein_coding protein_coding MGP_C3HHeJ_T0021323.1 MGP_C3HHeJ_G0016130.1 mouse_genomes_project 1 101563902 101948460 + MGP_C3HHeJ_P0021323 Cntnap5b protein_coding protein_coding MGP_C3HHeJ_T0021324.1 MGP_C3HHeJ_G0016130.1 mouse_genomes_project 1 101711799 101832845 + Cntnap5b protein_coding processed_transcript MGP_C3HHeJ_T0012041.1 MGP_C3HHeJ_G0010145.1 mouse_genomes_project 1 90040547 90040790 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018809.1 MGP_C3HHeJ_G0015637.1 mouse_genomes_project 1 15694287 15706845 - MGP_C3HHeJ_P0018809 Defb41 protein_coding protein_coding MGP_C3HHeJ_T0018810.1 MGP_C3HHeJ_G0015637.1 mouse_genomes_project 1 15702230 15706787 - MGP_C3HHeJ_P0018810 Defb41 protein_coding protein_coding MGP_C3HHeJ_T0022982.1 MGP_C3HHeJ_G0016466.1 mouse_genomes_project 1 169816740 169849901 - MGP_C3HHeJ_P0022982 Dusp27 protein_coding protein_coding MGP_C3HHeJ_T0022983.1 MGP_C3HHeJ_G0016466.1 mouse_genomes_project 1 169816745 169849875 - MGP_C3HHeJ_P0022983 Dusp27 protein_coding protein_coding MGP_C3HHeJ_T0002719.1 MGP_C3HHeJ_G0002588.1 mouse_genomes_project 1 36609271 36619444 + Gm16150 antisense antisense MGP_C3HHeJ_T0002720.1 MGP_C3HHeJ_G0002588.1 mouse_genomes_project 1 36613540 36620507 + Gm16150 antisense antisense MGP_C3HHeJ_T0018945.1 MGP_C3HHeJ_G0015673.1 mouse_genomes_project 1 31596498 31825160 - MGP_C3HHeJ_P0018945 Prim2 protein_coding protein_coding MGP_C3HHeJ_T0018946.1 MGP_C3HHeJ_G0015673.1 mouse_genomes_project 1 31623080 31776499 - Prim2 protein_coding retained_intron MGP_C3HHeJ_T0018947.1 MGP_C3HHeJ_G0015673.1 mouse_genomes_project 1 31775241 31777681 - Prim2 protein_coding retained_intron MGP_C3HHeJ_T0009474.1 MGP_C3HHeJ_G0007607.1 mouse_genomes_project 1 190480187 190480254 + Mir194-1 miRNA miRNA MGP_C3HHeJ_T0020999.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91813833 91894111 - MGP_C3HHeJ_P0020999 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021000.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91813833 91894111 - MGP_C3HHeJ_P0021000 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021001.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91814760 91894092 - MGP_C3HHeJ_P0021001 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021002.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91815289 91821235 - Col6a3 protein_coding retained_intron MGP_C3HHeJ_T0021003.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91839422 91858286 - Col6a3 protein_coding retained_intron MGP_C3HHeJ_T0021004.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91843061 91843891 - Col6a3 protein_coding retained_intron MGP_C3HHeJ_T0021005.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91852782 91894068 - MGP_C3HHeJ_P0021005 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0021006.1 MGP_C3HHeJ_G0016062.1 mouse_genomes_project 1 91872445 91894111 - MGP_C3HHeJ_P0021006 Col6a3 protein_coding protein_coding MGP_C3HHeJ_T0011825.1 MGP_C3HHeJ_G0009929.1 mouse_genomes_project 1 19059231 19060355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023689.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186206835 186254930 - MGP_C3HHeJ_P0023689 Wdr26 protein_coding protein_coding MGP_C3HHeJ_T0023690.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186206839 186254844 - MGP_C3HHeJ_P0023690 Wdr26 protein_coding protein_coding MGP_C3HHeJ_T0023691.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186210680 186254804 - MGP_C3HHeJ_P0023691 Wdr26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023692.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186211258 186217850 - MGP_C3HHeJ_P0023692 Wdr26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023693.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186213990 186217323 - MGP_C3HHeJ_P0023693 Wdr26 protein_coding protein_coding MGP_C3HHeJ_T0023694.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186215890 186217980 - Wdr26 protein_coding processed_transcript MGP_C3HHeJ_T0023695.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186220985 186230036 - Wdr26 protein_coding retained_intron MGP_C3HHeJ_T0023696.1 MGP_C3HHeJ_G0016646.1 mouse_genomes_project 1 186236499 186241296 - Wdr26 protein_coding retained_intron MGP_C3HHeJ_T0023134.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126019 175130898 + MGP_C3HHeJ_P0023134 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023135.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126020 175130896 + MGP_C3HHeJ_P0023135 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023136.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126035 175132755 + MGP_C3HHeJ_P0023136 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023137.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126043 175131054 + Nr1i3 protein_coding retained_intron MGP_C3HHeJ_T0023138.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126051 175130898 + MGP_C3HHeJ_P0023138 Nr1i3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023139.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126070 175131246 + Nr1i3 protein_coding retained_intron MGP_C3HHeJ_T0023140.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126070 175130897 + MGP_C3HHeJ_P0023140 Nr1i3 protein_coding protein_coding MGP_C3HHeJ_T0023141.1 MGP_C3HHeJ_G0016509.1 mouse_genomes_project 1 175126401 175130771 + Nr1i3 protein_coding retained_intron MGP_C3HHeJ_T0000534.1 MGP_C3HHeJ_G0000481.1 mouse_genomes_project 1 91887419 91889276 - TEC TEC MGP_C3HHeJ_T0012116.1 MGP_C3HHeJ_G0010220.1 mouse_genomes_project 1 121920496 121921160 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002940.1 MGP_C3HHeJ_G0002756.1 mouse_genomes_project 1 198716636 198717760 - Gm37650 antisense antisense MGP_C3HHeJ_T0020445.1 MGP_C3HHeJ_G0015949.1 mouse_genomes_project 1 75505197 75508771 - MGP_C3HHeJ_P0020445 A630095N17Rik protein_coding protein_coding MGP_C3HHeJ_T0020446.1 MGP_C3HHeJ_G0015949.1 mouse_genomes_project 1 75505358 75517159 - MGP_C3HHeJ_P0020446 A630095N17Rik protein_coding protein_coding MGP_C3HHeJ_T0020447.1 MGP_C3HHeJ_G0015949.1 mouse_genomes_project 1 75515931 75517171 - MGP_C3HHeJ_P0020447 A630095N17Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011867.1 MGP_C3HHeJ_G0009971.1 mouse_genomes_project 1 31811998 31812326 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098657.1 MGP_C3HHeJ_G0036851.1 mouse_genomes_project 1 144180615 144180722 + Gm25457 snRNA snRNA MGP_C3HHeJ_T0019973.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349401 63484601 + MGP_C3HHeJ_P0019973 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019974.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349405 63507808 + MGP_C3HHeJ_P0019974 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019975.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349420 63479677 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019976.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349445 63441567 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019977.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349722 63504448 + MGP_C3HHeJ_P0019977 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019978.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63349722 63507808 + MGP_C3HHeJ_P0019978 Adam23 protein_coding protein_coding MGP_C3HHeJ_T0019979.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63374672 63455051 + Adam23 protein_coding processed_transcript MGP_C3HHeJ_T0019980.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63398231 63507808 + Adam23 protein_coding processed_transcript MGP_C3HHeJ_T0019981.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63445694 63449218 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019982.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63465242 63477493 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019983.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63490322 63493710 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0019984.1 MGP_C3HHeJ_G0015859.1 mouse_genomes_project 1 63496549 63504342 + Adam23 protein_coding retained_intron MGP_C3HHeJ_T0012147.1 MGP_C3HHeJ_G0010251.1 mouse_genomes_project 1 139446930 139447269 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005977.1 MGP_C3HHeJ_G0004995.1 mouse_genomes_project 1 195959926 195970149 + Gm30932 lincRNA lincRNA MGP_C3HHeJ_T0020323.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987426 75029239 + MGP_C3HHeJ_P0020323 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020324.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987431 75010855 + MGP_C3HHeJ_P0020324 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020325.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987498 74998923 + Ttll4 protein_coding retained_intron MGP_C3HHeJ_T0020326.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 74987498 75007529 + MGP_C3HHeJ_P0020326 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020327.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75004635 75023477 + MGP_C3HHeJ_P0020327 Ttll4 protein_coding protein_coding MGP_C3HHeJ_T0020328.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75010823 75014126 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0020329.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75011453 75014148 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0020330.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75014920 75016176 + Ttll4 protein_coding retained_intron MGP_C3HHeJ_T0020331.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75015570 75027332 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0020332.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75020712 75025378 + Ttll4 protein_coding retained_intron MGP_C3HHeJ_T0020333.1 MGP_C3HHeJ_G0015928.1 mouse_genomes_project 1 75021233 75023341 + Ttll4 protein_coding processed_transcript MGP_C3HHeJ_T0018599.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912413 7020939 + MGP_C3HHeJ_P0018599 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018600.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912449 7020941 + MGP_C3HHeJ_P0018600 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018601.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912449 7020866 + MGP_C3HHeJ_P0018601 Sgk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018602.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912464 6947767 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0018603.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912491 7019714 + MGP_C3HHeJ_P0018603 Sgk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018604.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6912514 7020104 + MGP_C3HHeJ_P0018604 Sgk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018605.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965574 7020939 + MGP_C3HHeJ_P0018605 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018606.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965623 6985456 + Sgk3 protein_coding processed_transcript MGP_C3HHeJ_T0018607.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965623 6992373 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0018608.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 6965699 7019949 + MGP_C3HHeJ_P0018608 Sgk3 protein_coding protein_coding MGP_C3HHeJ_T0018609.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 7003510 7009288 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0018610.1 MGP_C3HHeJ_G0015600.1 mouse_genomes_project 1 7015534 7019283 + Sgk3 protein_coding retained_intron MGP_C3HHeJ_T0000525.1 MGP_C3HHeJ_G0000472.1 mouse_genomes_project 1 87782297 87782945 + TEC TEC MGP_C3HHeJ_T0022019.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137696508 137709477 + MGP_C3HHeJ_P0022019 Ptpn7 protein_coding protein_coding MGP_C3HHeJ_T0022020.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137696533 137712024 + MGP_C3HHeJ_P0022020 Ptpn7 protein_coding protein_coding MGP_C3HHeJ_T0022021.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137697116 137703750 + Ptpn7 protein_coding retained_intron MGP_C3HHeJ_T0022022.1 MGP_C3HHeJ_G0016285.1 mouse_genomes_project 1 137697117 137711666 + MGP_C3HHeJ_P0022022 Ptpn7 protein_coding protein_coding MGP_C3HHeJ_T0016766.1 MGP_C3HHeJ_G0014857.1 mouse_genomes_project 1 51316710 51396711 + Gm28177 processed_transcript processed_transcript MGP_C3HHeJ_T0011969.1 MGP_C3HHeJ_G0010073.1 mouse_genomes_project 1 60768028 60768264 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020024.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64942591 64962607 - MGP_C3HHeJ_P0020024 Akr1cl protein_coding protein_coding MGP_C3HHeJ_T0020025.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64942591 64962619 - MGP_C3HHeJ_P0020025 Akr1cl protein_coding protein_coding MGP_C3HHeJ_T0020026.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64944364 64946438 - Akr1cl protein_coding retained_intron MGP_C3HHeJ_T0020027.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64945962 64962546 - MGP_C3HHeJ_P0020027 Akr1cl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020028.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64957549 64962592 - Akr1cl protein_coding processed_transcript MGP_C3HHeJ_T0020029.1 MGP_C3HHeJ_G0015870.1 mouse_genomes_project 1 64959391 64962608 - Akr1cl protein_coding retained_intron MGP_C3HHeJ_T0101578.1 MGP_C3HHeJ_G0039544.1 mouse_genomes_project 1 108906107 108908660 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016782.1 MGP_C3HHeJ_G0014864.1 mouse_genomes_project 1 87067776 87076205 + C130036L24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016783.1 MGP_C3HHeJ_G0014864.1 mouse_genomes_project 1 87067786 87082981 + C130036L24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016784.1 MGP_C3HHeJ_G0014864.1 mouse_genomes_project 1 87067790 87070973 + C130036L24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016854.1 MGP_C3HHeJ_G0014881.1 mouse_genomes_project 1 168517638 168528738 + Gm20743 processed_transcript lincRNA MGP_C3HHeJ_T0016855.1 MGP_C3HHeJ_G0014881.1 mouse_genomes_project 1 168517863 168590726 + Gm20743 processed_transcript antisense MGP_C3HHeJ_T0018804.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537095 15569979 - Crisp4 protein_coding retained_intron MGP_C3HHeJ_T0018805.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537095 15569985 - MGP_C3HHeJ_P0018805 Crisp4 protein_coding protein_coding MGP_C3HHeJ_T0018806.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537108 15559529 - MGP_C3HHeJ_P0018806 Crisp4 protein_coding protein_coding MGP_C3HHeJ_T0018807.1 MGP_C3HHeJ_G0015635.1 mouse_genomes_project 1 15537504 15569985 - MGP_C3HHeJ_P0018807 Crisp4 protein_coding protein_coding MGP_C3HHeJ_T0023389.1 MGP_C3HHeJ_G0016568.1 mouse_genomes_project 1 177594648 177595639 + MGP_C3HHeJ_P0023389 Olfr418 protein_coding protein_coding MGP_C3HHeJ_T0022836.1 MGP_C3HHeJ_G0016433.1 mouse_genomes_project 1 166512649 166535215 - MGP_C3HHeJ_P0022836 Fmo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022837.1 MGP_C3HHeJ_G0016433.1 mouse_genomes_project 1 166512821 166534918 - MGP_C3HHeJ_P0022837 Fmo6 protein_coding protein_coding MGP_C3HHeJ_T0023253.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175862440 175882742 - MGP_C3HHeJ_P0023253 Ly9 protein_coding protein_coding MGP_C3HHeJ_T0023254.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175862449 175882690 - MGP_C3HHeJ_P0023254 Ly9 protein_coding protein_coding MGP_C3HHeJ_T0023255.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175862465 175882666 - MGP_C3HHeJ_P0023255 Ly9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023256.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175866100 175882661 - MGP_C3HHeJ_P0023256 Ly9 protein_coding protein_coding MGP_C3HHeJ_T0023257.1 MGP_C3HHeJ_G0016531.1 mouse_genomes_project 1 175875030 175882692 - Ly9 protein_coding retained_intron MGP_C3HHeJ_T0012174.1 MGP_C3HHeJ_G0010278.1 mouse_genomes_project 1 152010766 152011249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020989.1 MGP_C3HHeJ_G0016060.1 mouse_genomes_project 1 91225137 91237909 + MGP_C3HHeJ_P0020989 Ackr3 protein_coding protein_coding MGP_C3HHeJ_T0020990.1 MGP_C3HHeJ_G0016060.1 mouse_genomes_project 1 91225163 91234991 + MGP_C3HHeJ_P0020990 Ackr3 protein_coding protein_coding MGP_C3HHeJ_T0021764.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134381075 134401074 + MGP_C3HHeJ_P0021764 Slc45a3 protein_coding protein_coding MGP_C3HHeJ_T0021765.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134388713 134401069 + MGP_C3HHeJ_P0021765 Slc45a3 protein_coding protein_coding MGP_C3HHeJ_T0021766.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134394823 134396050 + MGP_C3HHeJ_P0021766 Slc45a3 protein_coding protein_coding MGP_C3HHeJ_T0021767.1 MGP_C3HHeJ_G0016232.1 mouse_genomes_project 1 134397068 134400011 + Slc45a3 protein_coding processed_transcript MGP_C3HHeJ_T0023884.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194232537 194272256 - MGP_C3HHeJ_P0023884 Kctd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023885.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194232537 194272268 - MGP_C3HHeJ_P0023885 Kctd3 protein_coding protein_coding MGP_C3HHeJ_T0023886.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233693 194236065 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023887.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233806 194235683 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023888.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233918 194240927 - MGP_C3HHeJ_P0023888 Kctd3 protein_coding protein_coding MGP_C3HHeJ_T0023889.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194233961 194235182 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023890.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194235243 194238940 - Kctd3 protein_coding processed_transcript MGP_C3HHeJ_T0023891.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194240877 194244137 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023892.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194243127 194272269 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023893.1 MGP_C3HHeJ_G0016687.1 mouse_genomes_project 1 194259453 194261859 - Kctd3 protein_coding retained_intron MGP_C3HHeJ_T0023556.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184459754 184479202 - MGP_C3HHeJ_P0023556 protein_coding protein_coding MGP_C3HHeJ_T0023558.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184460951 184466141 - protein_coding processed_transcript MGP_C3HHeJ_T0023559.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184461312 184466287 - protein_coding processed_transcript MGP_C3HHeJ_T0023560.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184463687 184479152 - protein_coding processed_transcript MGP_C3HHeJ_T0023561.1 MGP_C3HHeJ_G0016620.1 mouse_genomes_project 1 184466128 184478598 - protein_coding processed_transcript MGP_C3HHeJ_T0022575.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159887573 159958818 + MGP_C3HHeJ_P0022575 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0022576.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159887774 159984801 + MGP_C3HHeJ_P0022576 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0022577.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159887836 159977959 + MGP_C3HHeJ_P0022577 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0022578.1 MGP_C3HHeJ_G0016391.1 mouse_genomes_project 1 159949207 159963600 + MGP_C3HHeJ_P0022578 Abl2 protein_coding protein_coding MGP_C3HHeJ_T0000662.1 MGP_C3HHeJ_G0000607.1 mouse_genomes_project 1 159610268 159610905 - TEC TEC MGP_C3HHeJ_T0011831.1 MGP_C3HHeJ_G0009935.1 mouse_genomes_project 1 20923646 20924290 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012056.1 MGP_C3HHeJ_G0010160.1 mouse_genomes_project 1 99616231 99617215 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005619.1 MGP_C3HHeJ_G0004721.1 mouse_genomes_project 1 40046792 40049904 - Gm28634 lincRNA lincRNA MGP_C3HHeJ_T0024108.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441309 200463810 + MGP_C3HHeJ_P0024108 Cd34 protein_coding protein_coding MGP_C3HHeJ_T0024109.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441365 200463810 + MGP_C3HHeJ_P0024109 Cd34 protein_coding protein_coding MGP_C3HHeJ_T0024110.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441395 200453261 + Cd34 protein_coding retained_intron MGP_C3HHeJ_T0024111.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441441 200443720 + Cd34 protein_coding retained_intron MGP_C3HHeJ_T0024112.1 MGP_C3HHeJ_G0016727.1 mouse_genomes_project 1 200441485 200461081 + MGP_C3HHeJ_P0024112 Cd34 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012199.1 MGP_C3HHeJ_G0010303.1 mouse_genomes_project 1 160998323 160998845 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023680.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186116015 186175739 - MGP_C3HHeJ_P0023680 Nvl protein_coding protein_coding MGP_C3HHeJ_T0023681.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186120880 186122997 - Nvl protein_coding processed_transcript MGP_C3HHeJ_T0023682.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186122487 186124754 - Nvl protein_coding retained_intron MGP_C3HHeJ_T0023683.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186125210 186134371 - Nvl protein_coding retained_intron MGP_C3HHeJ_T0023684.1 MGP_C3HHeJ_G0016644.1 mouse_genomes_project 1 186166482 186168977 - Nvl protein_coding retained_intron MGP_C3HHeJ_T0099882.1 MGP_C3HHeJ_G0038076.1 mouse_genomes_project 1 129600400 129600509 + Gm23734 snoRNA snoRNA MGP_C3HHeJ_T0097963.1 MGP_C3HHeJ_G0036175.1 mouse_genomes_project 1 106500635 106500747 - n-R5s216 rRNA rRNA MGP_C3HHeJ_T0022909.1 MGP_C3HHeJ_G0016455.1 mouse_genomes_project 1 168860101 168884263 - MGP_C3HHeJ_P0022909 Sft2d2 protein_coding protein_coding MGP_C3HHeJ_T0022910.1 MGP_C3HHeJ_G0016455.1 mouse_genomes_project 1 168861635 168884146 - MGP_C3HHeJ_P0022910 Sft2d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022911.1 MGP_C3HHeJ_G0016455.1 mouse_genomes_project 1 168865002 168884142 - MGP_C3HHeJ_P0022911 Sft2d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018996.1 MGP_C3HHeJ_G0015679.1 mouse_genomes_project 1 32620190 32628180 - MGP_C3HHeJ_P0018996 Ccdc115 protein_coding protein_coding MGP_C3HHeJ_T0018997.1 MGP_C3HHeJ_G0015679.1 mouse_genomes_project 1 32620198 32622908 - Ccdc115 protein_coding retained_intron MGP_C3HHeJ_T0005696.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109083 72112877 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0005697.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109088 72112408 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0005698.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109373 72110809 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0005699.1 MGP_C3HHeJ_G0004775.1 mouse_genomes_project 1 72109474 72112260 + Gm8883 lincRNA lincRNA MGP_C3HHeJ_T0022340.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154540670 154604106 - MGP_C3HHeJ_P0022340 Swt1 protein_coding protein_coding MGP_C3HHeJ_T0022341.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154541333 154604087 - MGP_C3HHeJ_P0022341 Swt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022342.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154543378 154545328 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022343.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154552574 154557628 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022344.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154564498 154577973 - MGP_C3HHeJ_P0022344 Swt1 protein_coding protein_coding MGP_C3HHeJ_T0022345.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154574961 154599261 - MGP_C3HHeJ_P0022345 Swt1 protein_coding protein_coding MGP_C3HHeJ_T0022346.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154575596 154579534 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022347.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154586068 154587890 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022348.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154591230 154599046 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0022349.1 MGP_C3HHeJ_G0016347.1 mouse_genomes_project 1 154602674 154604106 - Swt1 protein_coding retained_intron MGP_C3HHeJ_T0023406.1 MGP_C3HHeJ_G0016574.1 mouse_genomes_project 1 178161738 178205281 + MGP_C3HHeJ_P0023406 protein_coding protein_coding MGP_C3HHeJ_T0012275.1 MGP_C3HHeJ_G0010379.1 mouse_genomes_project 1 199310424 199311352 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000715.1 MGP_C3HHeJ_G0000660.1 mouse_genomes_project 1 180551223 180553167 - TEC TEC MGP_C3HHeJ_T0020011.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64612953 64650583 + MGP_C3HHeJ_P0020011 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020012.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64613320 64648885 + MGP_C3HHeJ_P0020012 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020013.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64613686 64635319 + MGP_C3HHeJ_P0020013 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020014.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64613848 64650579 + MGP_C3HHeJ_P0020014 Ccnyl1 protein_coding protein_coding MGP_C3HHeJ_T0020015.1 MGP_C3HHeJ_G0015867.1 mouse_genomes_project 1 64624829 64648578 + MGP_C3HHeJ_P0020015 Ccnyl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0000777.1 MGP_C3HHeJ_G0000719.1 mouse_genomes_project 1 200495867 200498804 + TEC TEC MGP_C3HHeJ_T0022418.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156444087 156569790 - MGP_C3HHeJ_P0022418 Lamc1 protein_coding protein_coding MGP_C3HHeJ_T0022419.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156444087 156455024 - MGP_C3HHeJ_P0022419 Lamc1 protein_coding protein_coding MGP_C3HHeJ_T0022420.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156454640 156455298 - Lamc1 protein_coding retained_intron MGP_C3HHeJ_T0022421.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156454694 156465213 - MGP_C3HHeJ_P0022421 Lamc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022422.1 MGP_C3HHeJ_G0016362.1 mouse_genomes_project 1 156474499 156476344 - Lamc1 protein_coding retained_intron MGP_C3HHeJ_T0018568.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4212648 4308228 + MGP_C3HHeJ_P0018568 Pcmtd1 protein_coding protein_coding MGP_C3HHeJ_T0018569.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4212698 4295483 + Pcmtd1 protein_coding processed_transcript MGP_C3HHeJ_T0018570.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4212760 4306720 + Pcmtd1 protein_coding processed_transcript MGP_C3HHeJ_T0018571.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4279387 4304674 + MGP_C3HHeJ_P0018571 Pcmtd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018572.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4286619 4297952 + Pcmtd1 protein_coding retained_intron MGP_C3HHeJ_T0018573.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4294665 4307216 + Pcmtd1 protein_coding retained_intron MGP_C3HHeJ_T0018574.1 MGP_C3HHeJ_G0015593.1 mouse_genomes_project 1 4295137 4307257 + Pcmtd1 protein_coding retained_intron MGP_C3HHeJ_T0021844.1 MGP_C3HHeJ_G0016246.1 mouse_genomes_project 1 135338540 135398221 + MGP_C3HHeJ_P0021844 Lrrn2 protein_coding protein_coding MGP_C3HHeJ_T0021845.1 MGP_C3HHeJ_G0016246.1 mouse_genomes_project 1 135338622 135395366 + Lrrn2 protein_coding processed_transcript MGP_C3HHeJ_T0000773.1 MGP_C3HHeJ_G0000715.1 mouse_genomes_project 1 200144302 200146166 + TEC TEC MGP_C3HHeJ_T0023971.1 MGP_C3HHeJ_G0016701.1 mouse_genomes_project 1 196546028 196548262 - MGP_C3HHeJ_P0023971 Fam71a protein_coding protein_coding MGP_C3HHeJ_T0002796.1 MGP_C3HHeJ_G0002648.1 mouse_genomes_project 1 98224534 98264579 + Panct2 antisense antisense MGP_C3HHeJ_T0002797.1 MGP_C3HHeJ_G0002648.1 mouse_genomes_project 1 98225629 98235998 + Panct2 antisense antisense MGP_C3HHeJ_T0002798.1 MGP_C3HHeJ_G0002648.1 mouse_genomes_project 1 98225641 98232665 + Panct2 antisense antisense MGP_C3HHeJ_T0019265.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37791820 37906716 - MGP_C3HHeJ_P0019265 Tbc1d8 protein_coding protein_coding MGP_C3HHeJ_T0019266.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37792192 37792770 - MGP_C3HHeJ_P0019266 Tbc1d8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019267.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37792632 37906622 - MGP_C3HHeJ_P0019267 Tbc1d8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019268.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37793624 37906661 - MGP_C3HHeJ_P0019268 Tbc1d8 protein_coding protein_coding MGP_C3HHeJ_T0019269.1 MGP_C3HHeJ_G0015728.1 mouse_genomes_project 1 37811529 37812965 - Tbc1d8 protein_coding retained_intron MGP_C3HHeJ_T0012050.1 MGP_C3HHeJ_G0010154.1 mouse_genomes_project 1 94601110 94601899 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000544.1 MGP_C3HHeJ_G0000491.1 mouse_genomes_project 1 98913381 98914566 - TEC TEC MGP_C3HHeJ_T0009379.1 MGP_C3HHeJ_G0007512.1 mouse_genomes_project 1 10497393 10497475 + Gm27881 miRNA miRNA MGP_C3HHeJ_T0021124.1 MGP_C3HHeJ_G0016089.1 mouse_genomes_project 1 93773055 93774111 + MGP_C3HHeJ_P0021124 Olfr12 protein_coding protein_coding MGP_C3HHeJ_T0002895.1 MGP_C3HHeJ_G0002722.1 mouse_genomes_project 1 182077063 182077810 - Gm26801 antisense antisense MGP_C3HHeJ_T0002896.1 MGP_C3HHeJ_G0002722.1 mouse_genomes_project 1 182077772 182093361 - Gm26801 antisense antisense MGP_C3HHeJ_T0016798.1 MGP_C3HHeJ_G0014870.1 mouse_genomes_project 1 134913060 134925042 - 6030442K20Rik processed_transcript antisense MGP_C3HHeJ_T0016799.1 MGP_C3HHeJ_G0014870.1 mouse_genomes_project 1 134924055 134925061 - 6030442K20Rik processed_transcript retained_intron MGP_C3HHeJ_T0005755.1 MGP_C3HHeJ_G0004818.1 mouse_genomes_project 1 91173930 91180525 + 4930434B07Rik lincRNA lincRNA MGP_C3HHeJ_T0000510.1 MGP_C3HHeJ_G0000457.1 mouse_genomes_project 1 84009300 84010103 - TEC TEC MGP_C3HHeJ_T0012093.1 MGP_C3HHeJ_G0010197.1 mouse_genomes_project 1 113917917 113918480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000373.1 MGP_C3HHeJ_G0000321.1 mouse_genomes_project 1 21726567 21729373 + TEC TEC MGP_C3HHeJ_T0009383.1 MGP_C3HHeJ_G0007516.1 mouse_genomes_project 1 20858936 20859007 + Mir30a miRNA miRNA MGP_C3HHeJ_T0002910.1 MGP_C3HHeJ_G0002734.1 mouse_genomes_project 1 190607536 190619990 - 9630028B13Rik antisense antisense MGP_C3HHeJ_T0099888.1 MGP_C3HHeJ_G0038082.1 mouse_genomes_project 1 140427461 140427577 + Gm22727 snoRNA snoRNA MGP_C3HHeJ_T0005754.1 MGP_C3HHeJ_G0004817.1 mouse_genomes_project 1 90350567 90398641 - C030007H22Rik lincRNA lincRNA MGP_C3HHeJ_T0000346.1 MGP_C3HHeJ_G0000296.1 mouse_genomes_project 1 8865278 8867423 + TEC TEC MGP_C3HHeJ_T0021559.1 MGP_C3HHeJ_G0016185.1 mouse_genomes_project 1 127865610 128072824 + MGP_C3HHeJ_P0021559 Gpr39 protein_coding protein_coding MGP_C3HHeJ_T0021560.1 MGP_C3HHeJ_G0016185.1 mouse_genomes_project 1 128037488 128072135 + Gpr39 protein_coding processed_transcript MGP_C3HHeJ_T0021472.1 MGP_C3HHeJ_G0016165.1 mouse_genomes_project 1 121549967 121552791 + MGP_C3HHeJ_P0021472 Tmem185b protein_coding protein_coding MGP_C3HHeJ_T0021473.1 MGP_C3HHeJ_G0016165.1 mouse_genomes_project 1 121549980 121551037 + Tmem185b protein_coding processed_transcript MGP_C3HHeJ_T0021112.1 MGP_C3HHeJ_G0016082.1 mouse_genomes_project 1 93581048 93581808 - MGP_C3HHeJ_P0021112 Olfr1416 protein_coding protein_coding MGP_C3HHeJ_T0021113.1 MGP_C3HHeJ_G0016082.1 mouse_genomes_project 1 93581048 93587718 - MGP_C3HHeJ_P0021113 Olfr1416 protein_coding protein_coding MGP_C3HHeJ_T0012127.1 MGP_C3HHeJ_G0010231.1 mouse_genomes_project 1 125410664 125413298 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011922.1 MGP_C3HHeJ_G0010026.1 mouse_genomes_project 1 48292557 48292772 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022027.1 MGP_C3HHeJ_G0016287.1 mouse_genomes_project 1 137728023 137735467 - MGP_C3HHeJ_P0022027 Gpr37l1 protein_coding protein_coding MGP_C3HHeJ_T0023244.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175369738 175407546 + MGP_C3HHeJ_P0023244 F11r protein_coding protein_coding MGP_C3HHeJ_T0023245.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175369782 175401857 + F11r protein_coding retained_intron MGP_C3HHeJ_T0023246.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175369844 175405194 + MGP_C3HHeJ_P0023246 F11r protein_coding unknown_likely_coding MGP_C3HHeJ_T0023247.1 MGP_C3HHeJ_G0016527.1 mouse_genomes_project 1 175404849 175405644 + F11r protein_coding retained_intron MGP_C3HHeJ_T0011804.1 MGP_C3HHeJ_G0009908.1 mouse_genomes_project 1 13102892 13102992 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000559.1 MGP_C3HHeJ_G0000506.1 mouse_genomes_project 1 121654897 121655823 - TEC TEC MGP_C3HHeJ_T0002730.1 MGP_C3HHeJ_G0002596.1 mouse_genomes_project 1 39253927 39269024 + Gm37915 antisense antisense MGP_C3HHeJ_T0016777.1 MGP_C3HHeJ_G0014861.1 mouse_genomes_project 1 75191842 75219086 + Gm16582 processed_transcript processed_transcript MGP_C3HHeJ_T0011929.1 MGP_C3HHeJ_G0010033.1 mouse_genomes_project 1 49718140 49718302 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002784.1 MGP_C3HHeJ_G0002636.1 mouse_genomes_project 1 88701419 88702372 - Gm19582 antisense antisense MGP_C3HHeJ_T0022048.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137961612 138011730 - MGP_C3HHeJ_P0022048 Ipo9 protein_coding protein_coding MGP_C3HHeJ_T0022049.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137963762 138011689 - MGP_C3HHeJ_P0022049 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022050.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137963762 138011722 - MGP_C3HHeJ_P0022050 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022051.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137964405 137967899 - MGP_C3HHeJ_P0022051 Ipo9 protein_coding protein_coding MGP_C3HHeJ_T0022052.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137965093 137967854 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022053.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137965575 137968005 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022054.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137965680 137966854 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022055.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137967920 137969098 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022056.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137968741 137983339 - Ipo9 protein_coding processed_transcript MGP_C3HHeJ_T0022057.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137973414 137983430 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022058.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137982315 138011664 - MGP_C3HHeJ_P0022058 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022059.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137985989 137987109 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022060.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137986439 138000320 - Ipo9 protein_coding retained_intron MGP_C3HHeJ_T0022061.1 MGP_C3HHeJ_G0016293.1 mouse_genomes_project 1 137987825 138011650 - MGP_C3HHeJ_P0022061 Ipo9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011947.1 MGP_C3HHeJ_G0010051.1 mouse_genomes_project 1 54877729 54878077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020634.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81550659 81793335 + MGP_C3HHeJ_P0020634 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020635.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81550908 81793310 + MGP_C3HHeJ_P0020635 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020636.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81551010 81765139 + MGP_C3HHeJ_P0020636 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020637.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81551017 81794497 + MGP_C3HHeJ_P0020637 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0020638.1 MGP_C3HHeJ_G0015980.1 mouse_genomes_project 1 81551276 81840530 + MGP_C3HHeJ_P0020638 Nyap2 protein_coding protein_coding MGP_C3HHeJ_T0000680.1 MGP_C3HHeJ_G0000625.1 mouse_genomes_project 1 164104235 164107778 - TEC TEC MGP_C3HHeJ_T0011764.1 MGP_C3HHeJ_G0009868.1 mouse_genomes_project 1 3484085 3484558 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018827.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266620 18284116 - MGP_C3HHeJ_P0018827 Mcm3 protein_coding protein_coding MGP_C3HHeJ_T0018828.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266625 18284064 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0018829.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266658 18267373 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0018830.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18266817 18268569 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0018831.1 MGP_C3HHeJ_G0015643.1 mouse_genomes_project 1 18268332 18269576 - Mcm3 protein_coding retained_intron MGP_C3HHeJ_T0023649.1 MGP_C3HHeJ_G0016634.1 mouse_genomes_project 1 185679357 185685001 - MGP_C3HHeJ_P0023649 Mixl1 protein_coding protein_coding MGP_C3HHeJ_T0009408.1 MGP_C3HHeJ_G0007541.1 mouse_genomes_project 1 63135973 63136111 - Gm24513 miRNA miRNA MGP_C3HHeJ_T0011894.1 MGP_C3HHeJ_G0009998.1 mouse_genomes_project 1 42441542 42442821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000388.1 MGP_C3HHeJ_G0000336.1 mouse_genomes_project 1 23458355 23462905 - TEC TEC MGP_C3HHeJ_T0019809.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858562 58895959 - MGP_C3HHeJ_P0019809 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019810.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858562 58898927 - MGP_C3HHeJ_P0019810 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019811.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858562 58900680 - MGP_C3HHeJ_P0019811 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019812.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858563 58898927 - MGP_C3HHeJ_P0019812 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019813.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858567 58883309 - Mpp4 protein_coding processed_transcript MGP_C3HHeJ_T0019814.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858771 58895952 - MGP_C3HHeJ_P0019814 Mpp4 protein_coding protein_coding MGP_C3HHeJ_T0019815.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58858880 58898858 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0019816.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58876760 58890627 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0019817.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58876762 58888914 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0019818.1 MGP_C3HHeJ_G0015833.1 mouse_genomes_project 1 58886368 58898863 - Mpp4 protein_coding retained_intron MGP_C3HHeJ_T0005929.1 MGP_C3HHeJ_G0004960.1 mouse_genomes_project 1 185480893 185492158 - Gm37267 lincRNA lincRNA MGP_C3HHeJ_T0021376.1 MGP_C3HHeJ_G0016142.1 mouse_genomes_project 1 108624604 108647957 + MGP_C3HHeJ_P0021376 Serpinb12 protein_coding protein_coding MGP_C3HHeJ_T0021377.1 MGP_C3HHeJ_G0016142.1 mouse_genomes_project 1 108629914 108647957 + MGP_C3HHeJ_P0021377 Serpinb12 protein_coding protein_coding MGP_C3HHeJ_T0021378.1 MGP_C3HHeJ_G0016142.1 mouse_genomes_project 1 108629916 108641335 + Serpinb12 protein_coding retained_intron MGP_C3HHeJ_T0005626.1 MGP_C3HHeJ_G0004726.1 mouse_genomes_project 1 40917980 40942662 - Gm28140 lincRNA lincRNA MGP_C3HHeJ_T0011909.1 MGP_C3HHeJ_G0010013.1 mouse_genomes_project 1 44562360 44565364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012101.1 MGP_C3HHeJ_G0010205.1 mouse_genomes_project 1 115488105 115488841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011163.1 MGP_C3HHeJ_G0009296.1 mouse_genomes_project 1 169190131 169190382 - Gm23599 misc_RNA misc_RNA MGP_C3HHeJ_T0011793.1 MGP_C3HHeJ_G0009897.1 mouse_genomes_project 1 7952756 7953979 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011830.1 MGP_C3HHeJ_G0009934.1 mouse_genomes_project 1 20554506 20558077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011986.1 MGP_C3HHeJ_G0010090.1 mouse_genomes_project 1 64862992 64863371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022859.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167564567 167616891 - MGP_C3HHeJ_P0022859 BC055324 protein_coding protein_coding MGP_C3HHeJ_T0022861.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167572328 167616891 - MGP_C3HHeJ_P0022861 BC055324 protein_coding protein_coding MGP_C3HHeJ_T0022862.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167572849 167582045 - MGP_C3HHeJ_P0022862 BC055324 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022863.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167588667 167593875 - BC055324 protein_coding retained_intron MGP_C3HHeJ_T0022864.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167608984 167616859 - MGP_C3HHeJ_P0022864 BC055324 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022865.1 MGP_C3HHeJ_G0016441.1 mouse_genomes_project 1 167611832 167616636 - BC055324 protein_coding processed_transcript MGP_C3HHeJ_T0016858.1 MGP_C3HHeJ_G0014883.1 mouse_genomes_project 1 173765879 173767400 - Gm15852 processed_transcript processed_transcript MGP_C3HHeJ_T0020345.1 MGP_C3HHeJ_G0015933.1 mouse_genomes_project 1 75195879 75198678 + MGP_C3HHeJ_P0020345 Cdk5r2 protein_coding protein_coding MGP_C3HHeJ_T0021757.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273436 134280081 + MGP_C3HHeJ_P0021757 Rab29 protein_coding protein_coding MGP_C3HHeJ_T0021758.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273452 134280229 + MGP_C3HHeJ_P0021758 Rab29 protein_coding protein_coding MGP_C3HHeJ_T0021759.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273723 134279844 + MGP_C3HHeJ_P0021759 Rab29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021760.1 MGP_C3HHeJ_G0016230.1 mouse_genomes_project 1 134273865 134277189 + Rab29 protein_coding retained_intron MGP_C3HHeJ_T0020037.1 MGP_C3HHeJ_G0015876.1 mouse_genomes_project 1 65038003 65058059 - MGP_C3HHeJ_P0020037 D630023F18Rik protein_coding protein_coding MGP_C3HHeJ_T0020038.1 MGP_C3HHeJ_G0015876.1 mouse_genomes_project 1 65040031 65058038 - MGP_C3HHeJ_P0020038 D630023F18Rik protein_coding protein_coding MGP_C3HHeJ_T0020039.1 MGP_C3HHeJ_G0015876.1 mouse_genomes_project 1 65041434 65057959 - MGP_C3HHeJ_P0020039 D630023F18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000582.1 MGP_C3HHeJ_G0000529.1 mouse_genomes_project 1 130216931 130222921 - TEC TEC MGP_C3HHeJ_T0021700.1 MGP_C3HHeJ_G0016216.1 mouse_genomes_project 1 133406800 133411929 + MGP_C3HHeJ_P0021700 Il10 protein_coding protein_coding MGP_C3HHeJ_T0021635.1 MGP_C3HHeJ_G0016197.1 mouse_genomes_project 1 130531814 130575026 - MGP_C3HHeJ_P0021635 Lct protein_coding protein_coding MGP_C3HHeJ_T0021636.1 MGP_C3HHeJ_G0016197.1 mouse_genomes_project 1 130534629 130540314 - Lct protein_coding retained_intron MGP_C3HHeJ_T0018722.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11433991 11584108 - MGP_C3HHeJ_P0018722 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018723.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11433995 11584143 - MGP_C3HHeJ_P0018723 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018724.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11434703 11584027 - MGP_C3HHeJ_P0018724 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018725.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11435680 11578470 - MGP_C3HHeJ_P0018725 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018726.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11474599 11503138 - MGP_C3HHeJ_P0018726 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018727.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11525494 11578519 - MGP_C3HHeJ_P0018727 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018728.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11543265 11578528 - MGP_C3HHeJ_P0018728 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018729.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11543333 11583744 - MGP_C3HHeJ_P0018729 Eya1 protein_coding protein_coding MGP_C3HHeJ_T0018730.1 MGP_C3HHeJ_G0015617.1 mouse_genomes_project 1 11575110 11583959 - Eya1 protein_coding retained_intron MGP_C3HHeJ_T0021457.1 MGP_C3HHeJ_G0016161.1 mouse_genomes_project 1 120621173 120631791 + Tfcp2l1 protein_coding processed_transcript MGP_C3HHeJ_T0021458.1 MGP_C3HHeJ_G0016161.1 mouse_genomes_project 1 120621174 120680190 + MGP_C3HHeJ_P0021458 Tfcp2l1 protein_coding protein_coding MGP_C3HHeJ_T0016779.1 MGP_C3HHeJ_G0014863.1 mouse_genomes_project 1 83224807 83257162 - C430014B12Rik processed_transcript antisense MGP_C3HHeJ_T0016780.1 MGP_C3HHeJ_G0014863.1 mouse_genomes_project 1 83251894 83257214 - C430014B12Rik processed_transcript antisense MGP_C3HHeJ_T0016781.1 MGP_C3HHeJ_G0014863.1 mouse_genomes_project 1 83253754 83257192 - C430014B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0002678.1 MGP_C3HHeJ_G0002560.1 mouse_genomes_project 1 507053 554359 + Gm1992 antisense antisense MGP_C3HHeJ_T0011840.1 MGP_C3HHeJ_G0009944.1 mouse_genomes_project 1 25120464 25120881 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009443.1 MGP_C3HHeJ_G0007576.1 mouse_genomes_project 1 134631531 134631628 + Mir135b miRNA miRNA MGP_C3HHeJ_T0000376.1 MGP_C3HHeJ_G0000324.1 mouse_genomes_project 1 22976729 22980104 - TEC TEC MGP_C3HHeJ_T0018770.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13921958 14015892 - MGP_C3HHeJ_P0018770 Ube2w protein_coding protein_coding MGP_C3HHeJ_T0018771.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13952314 13973092 - Ube2w protein_coding processed_transcript MGP_C3HHeJ_T0018772.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13957501 14016069 - MGP_C3HHeJ_P0018772 Ube2w protein_coding protein_coding MGP_C3HHeJ_T0018773.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13969629 14015839 - MGP_C3HHeJ_P0018773 Ube2w protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018774.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13971851 14015864 - Ube2w protein_coding retained_intron MGP_C3HHeJ_T0018775.1 MGP_C3HHeJ_G0015627.1 mouse_genomes_project 1 13990960 14015864 - Ube2w protein_coding retained_intron MGP_C3HHeJ_T0000429.1 MGP_C3HHeJ_G0000376.1 mouse_genomes_project 1 41253610 41254286 + TEC TEC MGP_C3HHeJ_T0000396.1 MGP_C3HHeJ_G0000344.1 mouse_genomes_project 1 28838517 28841538 - TEC TEC MGP_C3HHeJ_T0023776.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188399285 188401217 + Aida protein_coding retained_intron MGP_C3HHeJ_T0023777.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188399744 188431428 + MGP_C3HHeJ_P0023777 Aida protein_coding protein_coding MGP_C3HHeJ_T0023778.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188400022 188406607 + Aida protein_coding processed_transcript MGP_C3HHeJ_T0023779.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188400100 188428740 + MGP_C3HHeJ_P0023779 Aida protein_coding protein_coding MGP_C3HHeJ_T0023780.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188400265 188420713 + MGP_C3HHeJ_P0023780 Aida protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023781.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188406524 188426475 + Aida protein_coding retained_intron MGP_C3HHeJ_T0023782.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188408183 188428739 + Aida protein_coding retained_intron MGP_C3HHeJ_T0023783.1 MGP_C3HHeJ_G0016663.1 mouse_genomes_project 1 188408323 188421007 + Aida protein_coding retained_intron MGP_C3HHeJ_T0005763.1 MGP_C3HHeJ_G0004826.1 mouse_genomes_project 1 92553278 92555029 + Gm28382 lincRNA lincRNA MGP_C3HHeJ_T0022072.1 MGP_C3HHeJ_G0016296.1 mouse_genomes_project 1 138364273 138367299 + MGP_C3HHeJ_P0022072 Phlda3 protein_coding protein_coding MGP_C3HHeJ_T0022073.1 MGP_C3HHeJ_G0016296.1 mouse_genomes_project 1 138365288 138367085 + Phlda3 protein_coding processed_transcript MGP_C3HHeJ_T0000537.1 MGP_C3HHeJ_G0000484.1 mouse_genomes_project 1 93070018 93075583 + TEC TEC MGP_C3HHeJ_T0000423.1 MGP_C3HHeJ_G0000370.1 mouse_genomes_project 1 37389620 37391258 + TEC TEC MGP_C3HHeJ_T0005752.1 MGP_C3HHeJ_G0004815.1 mouse_genomes_project 1 90007664 90013762 + 1700067G17Rik lincRNA lincRNA MGP_C3HHeJ_T0000506.1 MGP_C3HHeJ_G0000453.1 mouse_genomes_project 1 82876575 82879408 + TEC TEC MGP_C3HHeJ_T0101551.1 MGP_C3HHeJ_G0039517.1 mouse_genomes_project 1 58735258 58746071 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019193.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36230258 36233864 + MGP_C3HHeJ_P0019193 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0019194.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36230726 36234749 + MGP_C3HHeJ_P0019194 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0019195.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36230894 36233981 + MGP_C3HHeJ_P0019195 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0019196.1 MGP_C3HHeJ_G0015713.1 mouse_genomes_project 1 36231082 36234075 + MGP_C3HHeJ_P0019196 Lipt1 protein_coding protein_coding MGP_C3HHeJ_T0020733.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86391728 86413060 - A630001G21Rik protein_coding processed_transcript MGP_C3HHeJ_T0020734.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86391728 86457795 - MGP_C3HHeJ_P0020734 A630001G21Rik protein_coding protein_coding MGP_C3HHeJ_T0020735.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86392334 86413108 - MGP_C3HHeJ_P0020735 A630001G21Rik protein_coding protein_coding MGP_C3HHeJ_T0020736.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86392337 86413060 - MGP_C3HHeJ_P0020736 A630001G21Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020737.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86392735 86413033 - A630001G21Rik protein_coding processed_transcript MGP_C3HHeJ_T0020738.1 MGP_C3HHeJ_G0016000.1 mouse_genomes_project 1 86401259 86413040 - A630001G21Rik protein_coding processed_transcript MGP_C3HHeJ_T0099859.1 MGP_C3HHeJ_G0038053.1 mouse_genomes_project 1 67251546 67251675 + Gm26342 snoRNA snoRNA MGP_C3HHeJ_T0019367.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42403660 42483855 - MGP_C3HHeJ_P0019367 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0019368.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42406205 42483796 - MGP_C3HHeJ_P0019368 Uxs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019369.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42421714 42483855 - MGP_C3HHeJ_P0019369 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0019370.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42428442 42483076 - Uxs1 protein_coding processed_transcript MGP_C3HHeJ_T0019371.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42428442 42483805 - MGP_C3HHeJ_P0019371 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0019372.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42431578 42483817 - Uxs1 protein_coding processed_transcript MGP_C3HHeJ_T0019373.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42435728 42483817 - MGP_C3HHeJ_P0019373 Uxs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019374.1 MGP_C3HHeJ_G0015753.1 mouse_genomes_project 1 42446741 42483829 - MGP_C3HHeJ_P0019374 Uxs1 protein_coding protein_coding MGP_C3HHeJ_T0009442.1 MGP_C3HHeJ_G0007575.1 mouse_genomes_project 1 133896691 133896855 - Gm24273 miRNA miRNA MGP_C3HHeJ_T0012261.1 MGP_C3HHeJ_G0010365.1 mouse_genomes_project 1 194348853 194350752 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016819.1 MGP_C3HHeJ_G0014875.1 mouse_genomes_project 1 141700023 141704190 + Gm37423 processed_transcript retained_intron MGP_C3HHeJ_T0011157.1 MGP_C3HHeJ_G0009290.1 mouse_genomes_project 1 86464703 86464967 + Gm22906 misc_RNA misc_RNA MGP_C3HHeJ_T0021655.1 MGP_C3HHeJ_G0016202.1 mouse_genomes_project 1 132803121 132837226 - MGP_C3HHeJ_P0021655 protein_coding protein_coding MGP_C3HHeJ_T0012018.1 MGP_C3HHeJ_G0010122.1 mouse_genomes_project 1 80832032 80834114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011810.1 MGP_C3HHeJ_G0009914.1 mouse_genomes_project 1 14800744 14801215 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021589.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130028522 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021590.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130030733 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021591.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130030733 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021592.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130033335 + Ccnt2 protein_coding retained_intron MGP_C3HHeJ_T0021593.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130043029 + MGP_C3HHeJ_P0021593 Ccnt2 protein_coding protein_coding MGP_C3HHeJ_T0021594.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130009084 130040900 + MGP_C3HHeJ_P0021594 Ccnt2 protein_coding protein_coding MGP_C3HHeJ_T0021595.1 MGP_C3HHeJ_G0016191.1 mouse_genomes_project 1 130031502 130043029 + Ccnt2 protein_coding processed_transcript MGP_C3HHeJ_T0098643.1 MGP_C3HHeJ_G0036837.1 mouse_genomes_project 1 120676847 120676977 + Gm23497 snRNA snRNA MGP_C3HHeJ_T0011776.1 MGP_C3HHeJ_G0009880.1 mouse_genomes_project 1 4822948 4823820 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024099.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198777163 198801105 - MGP_C3HHeJ_P0024099 Camk1g protein_coding protein_coding MGP_C3HHeJ_T0024100.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198777163 198801032 - MGP_C3HHeJ_P0024100 Camk1g protein_coding protein_coding MGP_C3HHeJ_T0024101.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198779574 198790584 - MGP_C3HHeJ_P0024101 Camk1g protein_coding protein_coding MGP_C3HHeJ_T0024102.1 MGP_C3HHeJ_G0016725.1 mouse_genomes_project 1 198785605 198801052 - Camk1g protein_coding retained_intron MGP_C3HHeJ_T0022822.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166424089 166457776 - MGP_C3HHeJ_P0022822 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0022823.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166424295 166425002 - Fmo1 protein_coding processed_transcript MGP_C3HHeJ_T0022824.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166424578 166429200 - Fmo1 protein_coding processed_transcript MGP_C3HHeJ_T0022825.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166426095 166429200 - Fmo1 protein_coding retained_intron MGP_C3HHeJ_T0022826.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166428332 166451088 - MGP_C3HHeJ_P0022826 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0022827.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166430797 166450946 - MGP_C3HHeJ_P0022827 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0022828.1 MGP_C3HHeJ_G0016431.1 mouse_genomes_project 1 166430823 166450840 - MGP_C3HHeJ_P0022828 Fmo1 protein_coding protein_coding MGP_C3HHeJ_T0000736.1 MGP_C3HHeJ_G0000680.1 mouse_genomes_project 1 185344324 185347395 + TEC TEC MGP_C3HHeJ_T0099867.1 MGP_C3HHeJ_G0038061.1 mouse_genomes_project 1 96283303 96283413 - Gm23181 snoRNA snoRNA MGP_C3HHeJ_T0005578.1 MGP_C3HHeJ_G0004685.1 mouse_genomes_project 1 10292333 10303471 + Gm29283 lincRNA lincRNA MGP_C3HHeJ_T0012243.1 MGP_C3HHeJ_G0010347.1 mouse_genomes_project 1 184471006 184471525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000627.1 MGP_C3HHeJ_G0000572.1 mouse_genomes_project 1 141278206 141280610 - TEC TEC MGP_C3HHeJ_T0009407.1 MGP_C3HHeJ_G0007540.1 mouse_genomes_project 1 63058087 63059396 + miRNA miRNA MGP_C3HHeJ_T0101096.1 MGP_C3HHeJ_G0039281.1 mouse_genomes_project 1 176773546 176790387 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101097.1 MGP_C3HHeJ_G0039281.1 mouse_genomes_project 1 176789451 176790305 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0020977.1 MGP_C3HHeJ_G0016057.1 mouse_genomes_project 1 90943367 90946575 - MGP_C3HHeJ_P0020977 Gbx2 protein_coding protein_coding MGP_C3HHeJ_T0020978.1 MGP_C3HHeJ_G0016057.1 mouse_genomes_project 1 90943377 90944597 - Gbx2 protein_coding retained_intron MGP_C3HHeJ_T0000689.1 MGP_C3HHeJ_G0000634.1 mouse_genomes_project 1 164464350 164467919 + TEC TEC MGP_C3HHeJ_T0000630.1 MGP_C3HHeJ_G0000575.1 mouse_genomes_project 1 141762300 141765093 + TEC TEC MGP_C3HHeJ_T0020235.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593481 74596010 + MGP_C3HHeJ_P0020235 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020236.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593596 74666651 + MGP_C3HHeJ_P0020236 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020237.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593601 74595190 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0020238.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593605 74660522 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0020239.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74593606 74666661 + MGP_C3HHeJ_P0020239 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020240.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74594328 74595829 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0020248.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74645673 74666653 + MGP_C3HHeJ_P0020248 Pnkd protein_coding protein_coding MGP_C3HHeJ_T0020249.1 MGP_C3HHeJ_G0015915.1 mouse_genomes_project 1 74645726 74649324 + Pnkd protein_coding retained_intron MGP_C3HHeJ_T0005825.1 MGP_C3HHeJ_G0004875.1 mouse_genomes_project 1 132794199 132802830 - Gm15675 lincRNA lincRNA MGP_C3HHeJ_T0021608.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130192267 130341207 - MGP_C3HHeJ_P0021608 Zranb3 protein_coding protein_coding MGP_C3HHeJ_T0021609.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130192753 130341746 - MGP_C3HHeJ_P0021609 Zranb3 protein_coding protein_coding MGP_C3HHeJ_T0021610.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130203226 130210983 - Zranb3 protein_coding processed_transcript MGP_C3HHeJ_T0021611.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130225289 130341792 - Zranb3 protein_coding processed_transcript MGP_C3HHeJ_T0021612.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130234603 130341208 - Zranb3 protein_coding retained_intron MGP_C3HHeJ_T0021613.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130234991 130256735 - Zranb3 protein_coding processed_transcript MGP_C3HHeJ_T0021614.1 MGP_C3HHeJ_G0016194.1 mouse_genomes_project 1 130296574 130341199 - Zranb3 protein_coding retained_intron MGP_C3HHeJ_T0101331.1 MGP_C3HHeJ_G0039412.1 mouse_genomes_project 1 52582255 52589341 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101332.1 MGP_C3HHeJ_G0039412.1 mouse_genomes_project 1 52582281 52599171 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0002904.1 MGP_C3HHeJ_G0002729.1 mouse_genomes_project 1 185965148 185971204 - 2210411M09Rik antisense antisense MGP_C3HHeJ_T0098259.1 MGP_C3HHeJ_G0036471.1 mouse_genomes_project 1 88601691 88601963 + Gm25395 scaRNA scaRNA MGP_C3HHeJ_T0000509.1 MGP_C3HHeJ_G0000456.1 mouse_genomes_project 1 83898906 83900195 - TEC TEC MGP_C3HHeJ_T0022083.1 MGP_C3HHeJ_G0016298.1 mouse_genomes_project 1 138418066 138432558 + MGP_C3HHeJ_P0022083 Lad1 protein_coding protein_coding MGP_C3HHeJ_T0022084.1 MGP_C3HHeJ_G0016298.1 mouse_genomes_project 1 138429210 138431923 + Lad1 protein_coding processed_transcript MGP_C3HHeJ_T0022085.1 MGP_C3HHeJ_G0016298.1 mouse_genomes_project 1 138429749 138431678 + Lad1 protein_coding processed_transcript MGP_C3HHeJ_T0011892.1 MGP_C3HHeJ_G0009996.1 mouse_genomes_project 1 41896023 41897035 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000485.1 MGP_C3HHeJ_G0000432.1 mouse_genomes_project 1 72061075 72064596 - TEC TEC MGP_C3HHeJ_T0022925.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152053 169156068 + Mpc2 protein_coding retained_intron MGP_C3HHeJ_T0022926.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152453 169173351 + MGP_C3HHeJ_P0022926 Mpc2 protein_coding protein_coding MGP_C3HHeJ_T0022927.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152640 169169831 + Mpc2 protein_coding retained_intron MGP_C3HHeJ_T0022928.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169152781 169173245 + MGP_C3HHeJ_P0022928 Mpc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022929.1 MGP_C3HHeJ_G0016459.1 mouse_genomes_project 1 169170278 169173256 + Mpc2 protein_coding processed_transcript MGP_C3HHeJ_T0012169.1 MGP_C3HHeJ_G0010273.1 mouse_genomes_project 1 148262441 148262834 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101588.1 MGP_C3HHeJ_G0039554.1 mouse_genomes_project 1 162673177 162675122 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019560.1 MGP_C3HHeJ_G0015786.1 mouse_genomes_project 1 52389785 52423785 - MGP_C3HHeJ_P0019560 1700019A02Rik protein_coding protein_coding MGP_C3HHeJ_T0019561.1 MGP_C3HHeJ_G0015786.1 mouse_genomes_project 1 52389808 52423757 - MGP_C3HHeJ_P0019561 1700019A02Rik protein_coding protein_coding MGP_C3HHeJ_T0021678.1 MGP_C3HHeJ_G0016209.1 mouse_genomes_project 1 133107546 133121412 + MGP_C3HHeJ_P0021678 AA986860 protein_coding protein_coding MGP_C3HHeJ_T0021679.1 MGP_C3HHeJ_G0016209.1 mouse_genomes_project 1 133107680 133119253 + AA986860 protein_coding processed_transcript MGP_C3HHeJ_T0021680.1 MGP_C3HHeJ_G0016209.1 mouse_genomes_project 1 133117061 133121411 + AA986860 protein_coding retained_intron MGP_C3HHeJ_T0022210.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194292 142234911 + MGP_C3HHeJ_P0022210 Aspm protein_coding protein_coding MGP_C3HHeJ_T0022211.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194293 142213843 + Aspm protein_coding retained_intron MGP_C3HHeJ_T0022212.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194295 142234914 + MGP_C3HHeJ_P0022212 Aspm protein_coding protein_coding MGP_C3HHeJ_T0022213.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142194339 142196677 + Aspm protein_coding retained_intron MGP_C3HHeJ_T0022214.1 MGP_C3HHeJ_G0016322.1 mouse_genomes_project 1 142224347 142228216 + Aspm protein_coding processed_transcript MGP_C3HHeJ_T0018971.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32025250 32081040 - MGP_C3HHeJ_P0018971 Bend6 protein_coding protein_coding MGP_C3HHeJ_T0018972.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32025250 32080999 - MGP_C3HHeJ_P0018972 Bend6 protein_coding protein_coding MGP_C3HHeJ_T0018973.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32035891 32056930 - Bend6 protein_coding processed_transcript MGP_C3HHeJ_T0018974.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32036352 32057292 - Bend6 protein_coding retained_intron MGP_C3HHeJ_T0018975.1 MGP_C3HHeJ_G0015677.1 mouse_genomes_project 1 32047222 32056940 - Bend6 protein_coding processed_transcript MGP_C3HHeJ_T0023942.1 MGP_C3HHeJ_G0016695.1 mouse_genomes_project 1 196318592 196351302 - MGP_C3HHeJ_P0023942 Vash2 protein_coding protein_coding MGP_C3HHeJ_T0023943.1 MGP_C3HHeJ_G0016695.1 mouse_genomes_project 1 196318594 196351008 - MGP_C3HHeJ_P0023943 Vash2 protein_coding protein_coding MGP_C3HHeJ_T0023944.1 MGP_C3HHeJ_G0016695.1 mouse_genomes_project 1 196344907 196351220 - Vash2 protein_coding processed_transcript MGP_C3HHeJ_T0018801.1 MGP_C3HHeJ_G0015634.1 mouse_genomes_project 1 15142758 15185690 + MGP_C3HHeJ_P0018801 Crispld1 protein_coding protein_coding MGP_C3HHeJ_T0018802.1 MGP_C3HHeJ_G0015634.1 mouse_genomes_project 1 15142772 15161565 + MGP_C3HHeJ_P0018802 Crispld1 protein_coding protein_coding MGP_C3HHeJ_T0018803.1 MGP_C3HHeJ_G0015634.1 mouse_genomes_project 1 15142801 15186459 + MGP_C3HHeJ_P0018803 Crispld1 protein_coding protein_coding MGP_C3HHeJ_T0002769.1 MGP_C3HHeJ_G0002622.1 mouse_genomes_project 1 74587548 74588254 + Gm28364 antisense antisense MGP_C3HHeJ_T0016755.1 MGP_C3HHeJ_G0014851.1 mouse_genomes_project 1 34833828 34835794 + D430040D24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016756.1 MGP_C3HHeJ_G0014851.1 mouse_genomes_project 1 34834486 34841753 + D430040D24Rik processed_transcript antisense MGP_C3HHeJ_T0005670.1 MGP_C3HHeJ_G0004752.1 mouse_genomes_project 1 59244014 59248140 - Gm26813 lincRNA lincRNA MGP_C3HHeJ_T0000529.1 MGP_C3HHeJ_G0000476.1 mouse_genomes_project 1 89627866 89629627 + TEC TEC MGP_C3HHeJ_T0011935.1 MGP_C3HHeJ_G0010039.1 mouse_genomes_project 1 51758105 51758568 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000358.1 MGP_C3HHeJ_G0000308.1 mouse_genomes_project 1 12086293 12090614 + TEC TEC MGP_C3HHeJ_T0098332.1 MGP_C3HHeJ_G0036543.1 mouse_genomes_project 1 163839658 163846099 - Gm37529 sense_intronic sense_intronic MGP_C3HHeJ_T0000393.1 MGP_C3HHeJ_G0000341.1 mouse_genomes_project 1 23513325 23514547 + TEC TEC MGP_C3HHeJ_T0012219.1 MGP_C3HHeJ_G0010323.1 mouse_genomes_project 1 169656516 169658425 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000402.1 MGP_C3HHeJ_G0000350.1 mouse_genomes_project 1 31767780 31770855 - TEC TEC MGP_C3HHeJ_T0020840.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88046958 + MGP_C3HHeJ_P0020840 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020841.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88041173 + MGP_C3HHeJ_P0020841 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020842.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88033075 + MGP_C3HHeJ_P0020842 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020843.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88046958 + MGP_C3HHeJ_P0020843 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020844.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020359 88035324 + MGP_C3HHeJ_P0020844 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020845.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020384 88033068 + MGP_C3HHeJ_P0020845 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020846.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020424 88032341 + MGP_C3HHeJ_P0020846 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0020847.1 MGP_C3HHeJ_G0016027.1 mouse_genomes_project 1 88020731 88034532 + MGP_C3HHeJ_P0020847 Eif4e2 protein_coding protein_coding MGP_C3HHeJ_T0005796.1 MGP_C3HHeJ_G0004853.1 mouse_genomes_project 1 115805553 115878252 - 9330185C12Rik lincRNA lincRNA MGP_C3HHeJ_T0020224.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540135 74540944 + MGP_C3HHeJ_P0020224 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0020225.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540552 74574629 + MGP_C3HHeJ_P0020225 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0020226.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540572 74574411 + MGP_C3HHeJ_P0020226 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0020227.1 MGP_C3HHeJ_G0015912.1 mouse_genomes_project 1 74540605 74574412 + MGP_C3HHeJ_P0020227 Arpc2 protein_coding protein_coding MGP_C3HHeJ_T0023016.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170967830 171036053 - MGP_C3HHeJ_P0023016 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023017.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170970793 171035617 - MGP_C3HHeJ_P0023017 Uck2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023018.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170971179 170981792 - MGP_C3HHeJ_P0023018 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023019.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170971284 170989159 - MGP_C3HHeJ_P0023019 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023020.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170974845 171035334 - MGP_C3HHeJ_P0023020 Uck2 protein_coding protein_coding MGP_C3HHeJ_T0023021.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170979648 171035611 - MGP_C3HHeJ_P0023021 Uck2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023022.1 MGP_C3HHeJ_G0016476.1 mouse_genomes_project 1 170982438 171035440 - Uck2 protein_coding processed_transcript MGP_C3HHeJ_T0000728.1 MGP_C3HHeJ_G0000673.1 mouse_genomes_project 1 182297791 182299022 - TEC TEC MGP_C3HHeJ_T0019281.1 MGP_C3HHeJ_G0015733.1 mouse_genomes_project 1 38247421 38248597 - MGP_C3HHeJ_P0019281 Gm3646 protein_coding protein_coding MGP_C3HHeJ_T0009386.1 MGP_C3HHeJ_G0007519.1 mouse_genomes_project 1 27306992 27307088 - Gm23785 miRNA miRNA MGP_C3HHeJ_T0022700.1 MGP_C3HHeJ_G0016410.1 mouse_genomes_project 1 164455587 164524406 + MGP_C3HHeJ_P0022700 Rc3h1 protein_coding protein_coding MGP_C3HHeJ_T0022701.1 MGP_C3HHeJ_G0016410.1 mouse_genomes_project 1 164479431 164517236 + MGP_C3HHeJ_P0022701 Rc3h1 protein_coding protein_coding MGP_C3HHeJ_T0022702.1 MGP_C3HHeJ_G0016410.1 mouse_genomes_project 1 164500252 164501407 + Rc3h1 protein_coding retained_intron MGP_C3HHeJ_T0021132.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 93990756 94020380 + MGP_C3HHeJ_P0021132 Gpc1 protein_coding protein_coding MGP_C3HHeJ_T0021133.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 93991080 93994789 + Gpc1 protein_coding processed_transcript MGP_C3HHeJ_T0021134.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 94012450 94015224 + Gpc1 protein_coding retained_intron MGP_C3HHeJ_T0021135.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 94015817 94017126 + Gpc1 protein_coding retained_intron MGP_C3HHeJ_T0021136.1 MGP_C3HHeJ_G0016092.1 mouse_genomes_project 1 94016023 94017199 + Gpc1 protein_coding retained_intron MGP_C3HHeJ_T0011984.1 MGP_C3HHeJ_G0010088.1 mouse_genomes_project 1 64071859 64072324 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022591.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160153458 160283695 - MGP_C3HHeJ_P0022591 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022592.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160156038 160283692 - MGP_C3HHeJ_P0022592 Ralgps2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022593.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160156038 160283636 - MGP_C3HHeJ_P0022593 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022594.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160156981 160283480 - MGP_C3HHeJ_P0022594 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022595.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160157387 160283624 - MGP_C3HHeJ_P0022595 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022596.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160157393 160283701 - MGP_C3HHeJ_P0022596 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022597.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160158101 160163450 - Ralgps2 protein_coding retained_intron MGP_C3HHeJ_T0022598.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160162962 160283719 - MGP_C3HHeJ_P0022598 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022599.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160166386 160283660 - MGP_C3HHeJ_P0022599 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022600.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160168738 160283686 - MGP_C3HHeJ_P0022600 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022601.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160168757 160282911 - MGP_C3HHeJ_P0022601 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022602.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160178339 160180691 - Ralgps2 protein_coding retained_intron MGP_C3HHeJ_T0022603.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160178393 160182535 - Ralgps2 protein_coding retained_intron MGP_C3HHeJ_T0022606.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160231225 160283227 - MGP_C3HHeJ_P0022606 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0022607.1 MGP_C3HHeJ_G0016394.1 mouse_genomes_project 1 160244818 160282874 - MGP_C3HHeJ_P0022607 Ralgps2 protein_coding protein_coding MGP_C3HHeJ_T0011919.1 MGP_C3HHeJ_G0010023.1 mouse_genomes_project 1 47829791 47831328 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005724.1 MGP_C3HHeJ_G0004792.1 mouse_genomes_project 1 77865850 77867700 + Gm28386 lincRNA lincRNA MGP_C3HHeJ_T0005704.1 MGP_C3HHeJ_G0004779.1 mouse_genomes_project 1 72341150 72356074 - Gm4319 lincRNA lincRNA MGP_C3HHeJ_T0011859.1 MGP_C3HHeJ_G0009963.1 mouse_genomes_project 1 29607248 29609109 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024033.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 197905882 198177573 - MGP_C3HHeJ_P0024033 Hhat protein_coding protein_coding MGP_C3HHeJ_T0024034.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 197922003 198177583 - MGP_C3HHeJ_P0024034 Hhat protein_coding protein_coding MGP_C3HHeJ_T0024035.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 197952254 198177578 - MGP_C3HHeJ_P0024035 Hhat protein_coding non_stop_decay MGP_C3HHeJ_T0024036.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198031156 198133350 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0024037.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198056134 198094908 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0024038.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198133338 198144732 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0024039.1 MGP_C3HHeJ_G0016715.1 mouse_genomes_project 1 198143862 198177352 - Hhat protein_coding processed_transcript MGP_C3HHeJ_T0022321.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022321 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022322.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022322 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022323.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022323 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022324.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580421 153595875 - MGP_C3HHeJ_P0022324 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022325.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580825 153596442 - MGP_C3HHeJ_P0022325 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022326.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153580878 153596442 - MGP_C3HHeJ_P0022326 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022327.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153586289 153596442 - MGP_C3HHeJ_P0022327 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022328.1 MGP_C3HHeJ_G0016344.1 mouse_genomes_project 1 153588483 153596442 - MGP_C3HHeJ_P0022328 Prg4 protein_coding protein_coding MGP_C3HHeJ_T0022435.1 MGP_C3HHeJ_G0016365.1 mouse_genomes_project 1 156752681 156803226 - MGP_C3HHeJ_P0022435 Npl protein_coding protein_coding MGP_C3HHeJ_T0022436.1 MGP_C3HHeJ_G0016365.1 mouse_genomes_project 1 156801602 156802892 - Npl protein_coding retained_intron MGP_C3HHeJ_T0023079.1 MGP_C3HHeJ_G0016493.1 mouse_genomes_project 1 174129245 174137327 - MGP_C3HHeJ_P0023079 Gm7694 protein_coding protein_coding MGP_C3HHeJ_T0019505.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51404777 51476541 - MGP_C3HHeJ_P0019505 Gls protein_coding protein_coding MGP_C3HHeJ_T0019506.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407270 51475614 - MGP_C3HHeJ_P0019506 Gls protein_coding protein_coding MGP_C3HHeJ_T0019507.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407457 51433020 - MGP_C3HHeJ_P0019507 Gls protein_coding protein_coding MGP_C3HHeJ_T0019508.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407593 51410305 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019509.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51407611 51410475 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019510.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51409776 51433021 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019511.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51426299 51476550 - MGP_C3HHeJ_P0019511 Gls protein_coding protein_coding MGP_C3HHeJ_T0019512.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51427475 51444038 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019513.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51427475 51455538 - MGP_C3HHeJ_P0019513 Gls protein_coding protein_coding MGP_C3HHeJ_T0019514.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51429878 51433020 - MGP_C3HHeJ_P0019514 Gls protein_coding protein_coding MGP_C3HHeJ_T0019515.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51431663 51440090 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019516.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51433310 51458923 - Gls protein_coding processed_transcript MGP_C3HHeJ_T0019517.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51439193 51443930 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019518.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51447725 51458923 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019519.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51448736 51457862 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019520.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51450856 51459272 - Gls protein_coding retained_intron MGP_C3HHeJ_T0019521.1 MGP_C3HHeJ_G0015778.1 mouse_genomes_project 1 51457846 51476129 - Gls protein_coding processed_transcript MGP_C3HHeJ_T0020386.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75453082 75461757 - MGP_C3HHeJ_P0020386 Abcb6 protein_coding protein_coding MGP_C3HHeJ_T0020387.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75453084 75461651 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0020388.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75453123 75454235 - MGP_C3HHeJ_P0020388 Abcb6 protein_coding protein_coding MGP_C3HHeJ_T0020389.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75454085 75461651 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0020390.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75456917 75460314 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0020391.1 MGP_C3HHeJ_G0015943.1 mouse_genomes_project 1 75459274 75461741 - Abcb6 protein_coding retained_intron MGP_C3HHeJ_T0005604.1 MGP_C3HHeJ_G0004709.1 mouse_genomes_project 1 34047098 34050814 + Gm28415 lincRNA lincRNA MGP_C3HHeJ_T0011772.1 MGP_C3HHeJ_G0009876.1 mouse_genomes_project 1 4453211 4454223 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020267.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74724999 74755879 + MGP_C3HHeJ_P0020267 Vil1 protein_coding protein_coding MGP_C3HHeJ_T0020268.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74737523 74741488 + MGP_C3HHeJ_P0020268 Vil1 protein_coding protein_coding MGP_C3HHeJ_T0020269.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74739886 74741481 + Vil1 protein_coding retained_intron MGP_C3HHeJ_T0020270.1 MGP_C3HHeJ_G0015920.1 mouse_genomes_project 1 74742155 74744436 + Vil1 protein_coding retained_intron MGP_C3HHeJ_T0098238.1 MGP_C3HHeJ_G0036450.1 mouse_genomes_project 1 44507938 44508141 + Gm23984 ribozyme ribozyme MGP_C3HHeJ_T0019114.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978739 34980937 + MGP_C3HHeJ_P0019114 Cox5b protein_coding protein_coding MGP_C3HHeJ_T0019115.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978865 34980642 + MGP_C3HHeJ_P0019115 Cox5b protein_coding protein_coding MGP_C3HHeJ_T0019116.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978883 34979806 + Cox5b protein_coding retained_intron MGP_C3HHeJ_T0019117.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978897 34979763 + Cox5b protein_coding retained_intron MGP_C3HHeJ_T0019118.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978899 34980641 + Cox5b protein_coding processed_transcript MGP_C3HHeJ_T0019119.1 MGP_C3HHeJ_G0015701.1 mouse_genomes_project 1 34978943 34980642 + MGP_C3HHeJ_P0019119 Cox5b protein_coding protein_coding MGP_C3HHeJ_T0098335.1 MGP_C3HHeJ_G0036546.1 mouse_genomes_project 1 169142971 169146046 - Gm37864 sense_intronic sense_intronic MGP_C3HHeJ_T0012009.1 MGP_C3HHeJ_G0010113.1 mouse_genomes_project 1 75837080 75837428 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011942.1 MGP_C3HHeJ_G0010046.1 mouse_genomes_project 1 54610214 54610930 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011858.1 MGP_C3HHeJ_G0009962.1 mouse_genomes_project 1 29328893 29329533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012123.1 MGP_C3HHeJ_G0010227.1 mouse_genomes_project 1 124286696 124287531 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000490.1 MGP_C3HHeJ_G0000437.1 mouse_genomes_project 1 75297314 75326355 + TEC TEC MGP_C3HHeJ_T0021960.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136872580 136889137 - MGP_C3HHeJ_P0021960 Tmem183a protein_coding protein_coding MGP_C3HHeJ_T0021961.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136874165 136889099 - MGP_C3HHeJ_P0021961 Tmem183a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021962.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136874393 136877442 - Tmem183a protein_coding retained_intron MGP_C3HHeJ_T0021963.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136882596 136889111 - Tmem183a protein_coding retained_intron MGP_C3HHeJ_T0021964.1 MGP_C3HHeJ_G0016273.1 mouse_genomes_project 1 136882862 136888848 - MGP_C3HHeJ_P0021964 Tmem183a protein_coding protein_coding MGP_C3HHeJ_T0023631.1 MGP_C3HHeJ_G0016631.1 mouse_genomes_project 1 185403437 185455644 - MGP_C3HHeJ_P0023631 Stum protein_coding protein_coding MGP_C3HHeJ_T0023632.1 MGP_C3HHeJ_G0016631.1 mouse_genomes_project 1 185409663 185455681 - MGP_C3HHeJ_P0023632 Stum protein_coding protein_coding MGP_C3HHeJ_T0018823.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18240185 18247310 - MGP_C3HHeJ_P0018823 Il17f protein_coding protein_coding MGP_C3HHeJ_T0018824.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18240718 18242593 - Il17f protein_coding retained_intron MGP_C3HHeJ_T0018825.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18240770 18254608 - MGP_C3HHeJ_P0018825 Il17f protein_coding protein_coding MGP_C3HHeJ_T0018826.1 MGP_C3HHeJ_G0015642.1 mouse_genomes_project 1 18250515 18254608 - Il17f protein_coding processed_transcript MGP_C3HHeJ_T0002777.1 MGP_C3HHeJ_G0002629.1 mouse_genomes_project 1 78715242 78729713 - Gm28410 antisense antisense MGP_C3HHeJ_T0019017.1 MGP_C3HHeJ_G0015684.1 mouse_genomes_project 1 32801662 32812834 + MGP_C3HHeJ_P0019017 Amer3 protein_coding protein_coding MGP_C3HHeJ_T0002870.1 MGP_C3HHeJ_G0002701.1 mouse_genomes_project 1 166884836 166891537 + Gm20471 antisense antisense MGP_C3HHeJ_T0021116.1 MGP_C3HHeJ_G0016084.1 mouse_genomes_project 1 93650195 93659785 - MGP_C3HHeJ_P0021116 protein_coding protein_coding MGP_C3HHeJ_T0021117.1 MGP_C3HHeJ_G0016084.1 mouse_genomes_project 1 93650570 93659785 - MGP_C3HHeJ_P0021117 protein_coding protein_coding MGP_C3HHeJ_T0021118.1 MGP_C3HHeJ_G0016084.1 mouse_genomes_project 1 93650570 93659689 - MGP_C3HHeJ_P0021118 protein_coding protein_coding MGP_C3HHeJ_T0098308.1 MGP_C3HHeJ_G0036520.1 mouse_genomes_project 1 701418 713841 - Gm19938 sense_intronic sense_intronic MGP_C3HHeJ_T0021546.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127572575 127621721 - MGP_C3HHeJ_P0021546 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021547.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127573162 127621874 - MGP_C3HHeJ_P0021547 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021548.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127580072 127581898 - protein_coding retained_intron MGP_C3HHeJ_T0021549.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127590507 127593585 - protein_coding retained_intron MGP_C3HHeJ_T0021550.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127590526 127622120 - MGP_C3HHeJ_P0021550 protein_coding protein_coding MGP_C3HHeJ_T0021551.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127590556 127620994 - MGP_C3HHeJ_P0021551 protein_coding protein_coding MGP_C3HHeJ_T0021552.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127591935 127621847 - MGP_C3HHeJ_P0021552 protein_coding protein_coding MGP_C3HHeJ_T0021553.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127591992 127622100 - MGP_C3HHeJ_P0021553 protein_coding protein_coding MGP_C3HHeJ_T0021554.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127592001 127621863 - MGP_C3HHeJ_P0021554 protein_coding protein_coding MGP_C3HHeJ_T0021555.1 MGP_C3HHeJ_G0016183.1 mouse_genomes_project 1 127600715 127621821 - protein_coding retained_intron MGP_C3HHeJ_T0000447.1 MGP_C3HHeJ_G0000394.1 mouse_genomes_project 1 55489574 55489927 - TEC TEC MGP_C3HHeJ_T0005588.1 MGP_C3HHeJ_G0004695.1 mouse_genomes_project 1 20880134 20880533 + Gm27028 lincRNA lincRNA MGP_C3HHeJ_T0023700.1 MGP_C3HHeJ_G0016648.1 mouse_genomes_project 1 186563321 186565140 - MGP_C3HHeJ_P0023700 Ccdc121 protein_coding protein_coding MGP_C3HHeJ_T0016827.1 MGP_C3HHeJ_G0014879.1 mouse_genomes_project 1 163090407 163162659 + Gm10530 processed_transcript sense_intronic MGP_C3HHeJ_T0016828.1 MGP_C3HHeJ_G0014879.1 mouse_genomes_project 1 163159444 163162659 + Gm10530 processed_transcript lincRNA MGP_C3HHeJ_T0012075.1 MGP_C3HHeJ_G0010179.1 mouse_genomes_project 1 106935169 106935495 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021386.1 MGP_C3HHeJ_G0016147.1 mouse_genomes_project 1 109118143 109131140 + MGP_C3HHeJ_P0021386 Serpinb11 protein_coding protein_coding MGP_C3HHeJ_T0021387.1 MGP_C3HHeJ_G0016147.1 mouse_genomes_project 1 109118874 109137447 + MGP_C3HHeJ_P0021387 Serpinb11 protein_coding protein_coding MGP_C3HHeJ_T0019646.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54668286 54727461 - MGP_C3HHeJ_P0019646 Rftn2 protein_coding protein_coding MGP_C3HHeJ_T0019647.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54669875 54727461 - MGP_C3HHeJ_P0019647 Rftn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019648.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54701193 54727461 - MGP_C3HHeJ_P0019648 Rftn2 protein_coding protein_coding MGP_C3HHeJ_T0019649.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54703487 54705843 - Rftn2 protein_coding processed_transcript MGP_C3HHeJ_T0019650.1 MGP_C3HHeJ_G0015803.1 mouse_genomes_project 1 54724620 54727461 - Rftn2 protein_coding processed_transcript MGP_C3HHeJ_T0099852.1 MGP_C3HHeJ_G0038046.1 mouse_genomes_project 1 59468630 59468714 + Snord11 snoRNA snoRNA MGP_C3HHeJ_T0000442.1 MGP_C3HHeJ_G0000389.1 mouse_genomes_project 1 54208259 54209669 - TEC TEC MGP_C3HHeJ_T0021787.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134541429 134570123 - MGP_C3HHeJ_P0021787 Cdk18 protein_coding protein_coding MGP_C3HHeJ_T0021788.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544614 134546942 - Cdk18 protein_coding retained_intron MGP_C3HHeJ_T0021789.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544792 134570044 - MGP_C3HHeJ_P0021789 Cdk18 protein_coding protein_coding MGP_C3HHeJ_T0021790.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544859 134546719 - MGP_C3HHeJ_P0021790 Cdk18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021791.1 MGP_C3HHeJ_G0016235.1 mouse_genomes_project 1 134544962 134546284 - Cdk18 protein_coding retained_intron MGP_C3HHeJ_T0011166.1 MGP_C3HHeJ_G0009299.1 mouse_genomes_project 1 189996382 189996657 - Gm23780 misc_RNA misc_RNA MGP_C3HHeJ_T0021538.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123615967 123632613 - MGP_C3HHeJ_P0021538 Ddx18 protein_coding protein_coding MGP_C3HHeJ_T0021539.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123617274 123623827 - Ddx18 protein_coding retained_intron MGP_C3HHeJ_T0021540.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123622016 123624893 - MGP_C3HHeJ_P0021540 Ddx18 protein_coding protein_coding MGP_C3HHeJ_T0021541.1 MGP_C3HHeJ_G0016181.1 mouse_genomes_project 1 123629216 123632346 - Ddx18 protein_coding processed_transcript MGP_C3HHeJ_T0000699.1 MGP_C3HHeJ_G0000644.1 mouse_genomes_project 1 168530132 168533653 - TEC TEC MGP_C3HHeJ_T0002848.1 MGP_C3HHeJ_G0002683.1 mouse_genomes_project 1 155060170 155071697 + Gm28610 antisense antisense MGP_C3HHeJ_T0019959.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036198 63039860 + MGP_C3HHeJ_P0019959 Eef1b2 protein_coding protein_coding MGP_C3HHeJ_T0019960.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036502 63038736 + MGP_C3HHeJ_P0019960 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019961.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036503 63039030 + MGP_C3HHeJ_P0019961 Eef1b2 protein_coding protein_coding MGP_C3HHeJ_T0019962.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036504 63037883 + Eef1b2 protein_coding processed_transcript MGP_C3HHeJ_T0019963.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036518 63038942 + MGP_C3HHeJ_P0019963 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019964.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036518 63038996 + MGP_C3HHeJ_P0019964 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019965.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036520 63037797 + Eef1b2 protein_coding processed_transcript MGP_C3HHeJ_T0019966.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036558 63038253 + MGP_C3HHeJ_P0019966 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019967.1 MGP_C3HHeJ_G0015856.1 mouse_genomes_project 1 63036596 63038272 + MGP_C3HHeJ_P0019967 Eef1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101574.1 MGP_C3HHeJ_G0039540.1 mouse_genomes_project 1 104929303 104981927 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099911.1 MGP_C3HHeJ_G0038105.1 mouse_genomes_project 1 169258556 169258683 - Gm23208 snoRNA snoRNA MGP_C3HHeJ_T0005874.1 MGP_C3HHeJ_G0004916.1 mouse_genomes_project 1 157568841 157584201 + 4930532M18Rik lincRNA lincRNA MGP_C3HHeJ_T0005875.1 MGP_C3HHeJ_G0004916.1 mouse_genomes_project 1 157570145 157584022 + 4930532M18Rik lincRNA lincRNA MGP_C3HHeJ_T0101592.1 MGP_C3HHeJ_G0039558.1 mouse_genomes_project 1 177406309 177406609 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098614.1 MGP_C3HHeJ_G0036808.1 mouse_genomes_project 1 51677720 51677829 - Gm23460 snRNA snRNA MGP_C3HHeJ_T0000691.1 MGP_C3HHeJ_G0000636.1 mouse_genomes_project 1 164553412 164554263 - TEC TEC MGP_C3HHeJ_T0098312.1 MGP_C3HHeJ_G0036524.1 mouse_genomes_project 1 51074951 51076230 - Gm29453 sense_intronic sense_intronic MGP_C3HHeJ_T0019923.1 MGP_C3HHeJ_G0015850.1 mouse_genomes_project 1 60698827 60729906 + Ctla4 protein_coding processed_transcript MGP_C3HHeJ_T0019924.1 MGP_C3HHeJ_G0015850.1 mouse_genomes_project 1 60726214 60733018 + MGP_C3HHeJ_P0019924 Ctla4 protein_coding protein_coding MGP_C3HHeJ_T0019925.1 MGP_C3HHeJ_G0015850.1 mouse_genomes_project 1 60726360 60731955 + MGP_C3HHeJ_P0019925 Ctla4 protein_coding protein_coding MGP_C3HHeJ_T0011775.1 MGP_C3HHeJ_G0009879.1 mouse_genomes_project 1 4761472 4763567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012258.1 MGP_C3HHeJ_G0010362.1 mouse_genomes_project 1 191066931 191067528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000758.1 MGP_C3HHeJ_G0000701.1 mouse_genomes_project 1 192886571 192887064 - TEC TEC MGP_C3HHeJ_T0024007.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197400262 197412220 + MGP_C3HHeJ_P0024007 Rd3 protein_coding protein_coding MGP_C3HHeJ_T0024008.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197400265 197409285 + MGP_C3HHeJ_P0024008 Rd3 protein_coding protein_coding MGP_C3HHeJ_T0024009.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197401143 197409284 + MGP_C3HHeJ_P0024009 Rd3 protein_coding protein_coding MGP_C3HHeJ_T0024010.1 MGP_C3HHeJ_G0016711.1 mouse_genomes_project 1 197407062 197409285 + Rd3 protein_coding retained_intron MGP_C3HHeJ_T0000368.1 MGP_C3HHeJ_G0000318.1 mouse_genomes_project 1 19413766 19415063 - TEC TEC MGP_C3HHeJ_T0019705.1 MGP_C3HHeJ_G0015815.1 mouse_genomes_project 1 57629136 57709134 + MGP_C3HHeJ_P0019705 Aox1 protein_coding protein_coding MGP_C3HHeJ_T0019706.1 MGP_C3HHeJ_G0015815.1 mouse_genomes_project 1 57629169 57673738 + Aox1 protein_coding retained_intron MGP_C3HHeJ_T0019707.1 MGP_C3HHeJ_G0015815.1 mouse_genomes_project 1 57629222 57662785 + MGP_C3HHeJ_P0019707 Aox1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099820.1 MGP_C3HHeJ_G0038014.1 mouse_genomes_project 1 7071978 7072065 - Snord87 snoRNA snoRNA MGP_C3HHeJ_T0099897.1 MGP_C3HHeJ_G0038091.1 mouse_genomes_project 1 164424200 164424321 - Gm24988 snoRNA snoRNA MGP_C3HHeJ_T0020979.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90965721 91031971 - MGP_C3HHeJ_P0020979 Asb18 protein_coding protein_coding MGP_C3HHeJ_T0020980.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90968663 91032060 - MGP_C3HHeJ_P0020980 Asb18 protein_coding protein_coding MGP_C3HHeJ_T0020981.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90968750 91031971 - MGP_C3HHeJ_P0020981 Asb18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020982.1 MGP_C3HHeJ_G0016058.1 mouse_genomes_project 1 90968751 91031971 - MGP_C3HHeJ_P0020982 Asb18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021683.1 MGP_C3HHeJ_G0016211.1 mouse_genomes_project 1 133207730 133233284 + MGP_C3HHeJ_P0021683 Pigr protein_coding protein_coding MGP_C3HHeJ_T0021684.1 MGP_C3HHeJ_G0016211.1 mouse_genomes_project 1 133207934 133225728 + MGP_C3HHeJ_P0021684 Pigr protein_coding protein_coding MGP_C3HHeJ_T0021685.1 MGP_C3HHeJ_G0016211.1 mouse_genomes_project 1 133210056 133225696 + MGP_C3HHeJ_P0021685 Pigr protein_coding protein_coding MGP_C3HHeJ_T0000530.1 MGP_C3HHeJ_G0000477.1 mouse_genomes_project 1 90478909 90481293 + TEC TEC MGP_C3HHeJ_T0019912.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60302683 60389098 - MGP_C3HHeJ_P0019912 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019913.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60303576 60319903 - MGP_C3HHeJ_P0019913 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019914.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60303627 60389084 - MGP_C3HHeJ_P0019914 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019915.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60311028 60389088 - MGP_C3HHeJ_P0019915 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0019916.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60313675 60316634 - Raph1 protein_coding retained_intron MGP_C3HHeJ_T0019917.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60321955 60323618 - Raph1 protein_coding retained_intron MGP_C3HHeJ_T0019918.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60334257 60343186 - Raph1 protein_coding retained_intron MGP_C3HHeJ_T0019919.1 MGP_C3HHeJ_G0015848.1 mouse_genomes_project 1 60346592 60389423 - MGP_C3HHeJ_P0019919 Raph1 protein_coding protein_coding MGP_C3HHeJ_T0101585.1 MGP_C3HHeJ_G0039551.1 mouse_genomes_project 1 142325117 142392772 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002803.1 MGP_C3HHeJ_G0002651.1 mouse_genomes_project 1 108223347 108257261 + D630008O14Rik antisense antisense MGP_C3HHeJ_T0002804.1 MGP_C3HHeJ_G0002651.1 mouse_genomes_project 1 108223347 108240392 + D630008O14Rik antisense antisense MGP_C3HHeJ_T0002679.1 MGP_C3HHeJ_G0002561.1 mouse_genomes_project 1 2052156 2058264 + Gm16041 antisense antisense MGP_C3HHeJ_T0011861.1 MGP_C3HHeJ_G0009965.1 mouse_genomes_project 1 31151733 31153866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011834.1 MGP_C3HHeJ_G0009938.1 mouse_genomes_project 1 22558393 22559591 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002744.1 MGP_C3HHeJ_G0002608.1 mouse_genomes_project 1 58754706 58796174 + Gm29018 antisense antisense MGP_C3HHeJ_T0002745.1 MGP_C3HHeJ_G0002608.1 mouse_genomes_project 1 58771745 58773597 + Gm29018 antisense antisense MGP_C3HHeJ_T0012154.1 MGP_C3HHeJ_G0010258.1 mouse_genomes_project 1 141648670 141649109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018940.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269433 30772174 + MGP_C3HHeJ_P0018940 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0018941.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269448 30347722 + MGP_C3HHeJ_P0018941 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0018942.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269467 30441263 + MGP_C3HHeJ_P0018942 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0018943.1 MGP_C3HHeJ_G0015671.1 mouse_genomes_project 1 30269606 30410615 + MGP_C3HHeJ_P0018943 Khdrbs2 protein_coding protein_coding MGP_C3HHeJ_T0009481.1 MGP_C3HHeJ_G0007614.1 mouse_genomes_project 1 200539960 200540048 + Mir29c miRNA miRNA MGP_C3HHeJ_T0098634.1 MGP_C3HHeJ_G0036828.1 mouse_genomes_project 1 88227798 88227893 - Gm23504 snRNA snRNA MGP_C3HHeJ_T0011899.1 MGP_C3HHeJ_G0010003.1 mouse_genomes_project 1 43033685 43034674 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021949.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136719498 136755719 - MGP_C3HHeJ_P0021949 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0021950.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136719500 136756572 - MGP_C3HHeJ_P0021950 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0021951.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136721624 136756538 - MGP_C3HHeJ_P0021951 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0021952.1 MGP_C3HHeJ_G0016270.1 mouse_genomes_project 1 136723672 136756505 - MGP_C3HHeJ_P0021952 Adora1 protein_coding protein_coding MGP_C3HHeJ_T0099843.1 MGP_C3HHeJ_G0038037.1 mouse_genomes_project 1 44480996 44481127 + Gm23974 snoRNA snoRNA MGP_C3HHeJ_T0012065.1 MGP_C3HHeJ_G0010169.1 mouse_genomes_project 1 102122118 102122475 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022165.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775175 140830151 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022166.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775721 140891937 - MGP_C3HHeJ_P0022166 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022167.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775727 140891898 - MGP_C3HHeJ_P0022167 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022168.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140775734 140891931 - MGP_C3HHeJ_P0022168 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022169.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140825739 140829184 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022170.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140825961 140891865 - MGP_C3HHeJ_P0022170 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022171.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140831046 140834428 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022172.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140831547 140891931 - MGP_C3HHeJ_P0022172 Ptprc protein_coding protein_coding MGP_C3HHeJ_T0022173.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140833180 140891930 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022174.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140837530 140891927 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022175.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140840685 140892339 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022176.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140888607 140891820 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0022177.1 MGP_C3HHeJ_G0016314.1 mouse_genomes_project 1 140889374 140891880 - Ptprc protein_coding retained_intron MGP_C3HHeJ_T0098260.1 MGP_C3HHeJ_G0036472.1 mouse_genomes_project 1 88611882 88612147 + Scarna6 scaRNA scaRNA MGP_C3HHeJ_T0011958.1 MGP_C3HHeJ_G0010062.1 mouse_genomes_project 1 59435080 59435465 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005848.1 MGP_C3HHeJ_G0004895.1 mouse_genomes_project 1 140623852 140627470 - Gm26979 lincRNA lincRNA MGP_C3HHeJ_T0019243.1 MGP_C3HHeJ_G0015722.1 mouse_genomes_project 1 37188156 37229032 - MGP_C3HHeJ_P0019243 Lonrf2 protein_coding protein_coding MGP_C3HHeJ_T0019244.1 MGP_C3HHeJ_G0015722.1 mouse_genomes_project 1 37188979 37213844 - MGP_C3HHeJ_P0019244 Lonrf2 protein_coding protein_coding MGP_C3HHeJ_T0019245.1 MGP_C3HHeJ_G0015722.1 mouse_genomes_project 1 37227800 37228978 - Lonrf2 protein_coding retained_intron MGP_C3HHeJ_T0002919.1 MGP_C3HHeJ_G0002742.1 mouse_genomes_project 1 195143215 195146695 - Gm26574 antisense antisense MGP_C3HHeJ_T0005676.1 MGP_C3HHeJ_G0004758.1 mouse_genomes_project 1 61279516 61311653 + Gm11588 lincRNA lincRNA MGP_C3HHeJ_T0011959.1 MGP_C3HHeJ_G0010063.1 mouse_genomes_project 1 59739857 59741919 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000600.1 MGP_C3HHeJ_G0000547.1 mouse_genomes_project 1 134531557 134537516 + TEC TEC MGP_C3HHeJ_T0098630.1 MGP_C3HHeJ_G0036824.1 mouse_genomes_project 1 74512872 74512979 + Gm25524 snRNA snRNA MGP_C3HHeJ_T0099846.1 MGP_C3HHeJ_G0038040.1 mouse_genomes_project 1 57009377 57009507 - Gm22371 snoRNA snoRNA MGP_C3HHeJ_T0098647.1 MGP_C3HHeJ_G0036841.1 mouse_genomes_project 1 130764607 130764712 - Gm25384 snRNA snRNA MGP_C3HHeJ_T0011857.1 MGP_C3HHeJ_G0009961.1 mouse_genomes_project 1 29328892 29329533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020281.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869552 74895093 + MGP_C3HHeJ_P0020281 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020282.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869552 74895093 + MGP_C3HHeJ_P0020282 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020283.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869552 74895093 + MGP_C3HHeJ_P0020283 Plcd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020284.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869567 74887911 + Plcd4 protein_coding retained_intron MGP_C3HHeJ_T0020285.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869567 74893276 + MGP_C3HHeJ_P0020285 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020286.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74869567 74893276 + MGP_C3HHeJ_P0020286 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020287.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74871024 74872936 + Plcd4 protein_coding retained_intron MGP_C3HHeJ_T0020288.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74871028 74893276 + MGP_C3HHeJ_P0020288 Plcd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020289.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74871028 74893276 + MGP_C3HHeJ_P0020289 Plcd4 protein_coding protein_coding MGP_C3HHeJ_T0020290.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74887731 74892600 + Plcd4 protein_coding processed_transcript MGP_C3HHeJ_T0020291.1 MGP_C3HHeJ_G0015923.1 mouse_genomes_project 1 74891735 74892925 + Plcd4 protein_coding retained_intron MGP_C3HHeJ_T0098637.1 MGP_C3HHeJ_G0036831.1 mouse_genomes_project 1 99402752 99402859 + Gm24465 snRNA snRNA MGP_C3HHeJ_T0020739.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86473673 86534298 + MGP_C3HHeJ_P0020739 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020740.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86473773 86500535 + MGP_C3HHeJ_P0020740 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020741.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86474693 86520231 + MGP_C3HHeJ_P0020741 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020742.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86474736 86533087 + MGP_C3HHeJ_P0020742 Cab39 protein_coding protein_coding MGP_C3HHeJ_T0020743.1 MGP_C3HHeJ_G0016001.1 mouse_genomes_project 1 86525991 86528982 + Cab39 protein_coding retained_intron MGP_C3HHeJ_T0005582.1 MGP_C3HHeJ_G0004689.1 mouse_genomes_project 1 15751042 15757125 + lincRNA lincRNA MGP_C3HHeJ_T0011887.1 MGP_C3HHeJ_G0009991.1 mouse_genomes_project 1 37686706 37686989 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009464.1 MGP_C3HHeJ_G0007597.1 mouse_genomes_project 1 174968580 174968642 - Gm27844 miRNA miRNA MGP_C3HHeJ_T0019350.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41666228 41720209 - MGP_C3HHeJ_P0019350 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019351.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41666248 41714319 - MGP_C3HHeJ_P0019351 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019352.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41673736 41679962 - Tgfbrap1 protein_coding retained_intron MGP_C3HHeJ_T0019353.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41678919 41714037 - MGP_C3HHeJ_P0019353 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019354.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41693093 41720195 - MGP_C3HHeJ_P0019354 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019355.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41695838 41714053 - Tgfbrap1 protein_coding retained_intron MGP_C3HHeJ_T0019356.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41696079 41720224 - Tgfbrap1 protein_coding retained_intron MGP_C3HHeJ_T0019357.1 MGP_C3HHeJ_G0015748.1 mouse_genomes_project 1 41697213 41719951 - MGP_C3HHeJ_P0019357 Tgfbrap1 protein_coding protein_coding MGP_C3HHeJ_T0019213.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36350805 36364223 - MGP_C3HHeJ_P0019213 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019214.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353010 36364801 - MGP_C3HHeJ_P0019214 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019215.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353010 36364151 - MGP_C3HHeJ_P0019215 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019216.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353012 36364132 - Txndc9 protein_coding retained_intron MGP_C3HHeJ_T0019217.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353256 36362761 - MGP_C3HHeJ_P0019217 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019218.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36353259 36364524 - MGP_C3HHeJ_P0019218 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019219.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36357173 36363574 - MGP_C3HHeJ_P0019219 Txndc9 protein_coding protein_coding MGP_C3HHeJ_T0019220.1 MGP_C3HHeJ_G0015718.1 mouse_genomes_project 1 36362830 36364170 - Txndc9 protein_coding retained_intron MGP_C3HHeJ_T0002721.1 MGP_C3HHeJ_G0002589.1 mouse_genomes_project 1 36689888 36693917 + Gm16151 antisense antisense MGP_C3HHeJ_T0000732.1 MGP_C3HHeJ_G0000676.1 mouse_genomes_project 1 184978135 184980599 + TEC TEC MGP_C3HHeJ_T0022542.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159386983 159422831 + MGP_C3HHeJ_P0022542 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022543.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159387306 159406810 + MGP_C3HHeJ_P0022543 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022544.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159387352 159413430 + MGP_C3HHeJ_P0022544 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022545.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159387713 159405373 + MGP_C3HHeJ_P0022545 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022546.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392463 159404402 + Tor1aip2 protein_coding processed_transcript MGP_C3HHeJ_T0022547.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392463 159422831 + MGP_C3HHeJ_P0022547 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022548.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392490 159405373 + MGP_C3HHeJ_P0022548 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022549.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159392490 159405373 + MGP_C3HHeJ_P0022549 Tor1aip2 protein_coding protein_coding MGP_C3HHeJ_T0022550.1 MGP_C3HHeJ_G0016385.1 mouse_genomes_project 1 159417195 159418823 + Tor1aip2 protein_coding retained_intron MGP_C3HHeJ_T0021694.1 MGP_C3HHeJ_G0016214.1 mouse_genomes_project 1 133289062 133292879 - MGP_C3HHeJ_P0021694 Il20 protein_coding protein_coding MGP_C3HHeJ_T0021695.1 MGP_C3HHeJ_G0016214.1 mouse_genomes_project 1 133289492 133292654 - MGP_C3HHeJ_P0021695 Il20 protein_coding protein_coding MGP_C3HHeJ_T0021459.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120833167 121055465 - MGP_C3HHeJ_P0021459 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021460.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021460 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021461.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021461 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021462.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021462 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021463.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021463 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021464.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847501 121055185 - MGP_C3HHeJ_P0021464 Gli2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021465.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847503 121055185 - MGP_C3HHeJ_P0021465 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021466.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120847503 121055185 - MGP_C3HHeJ_P0021466 Gli2 protein_coding protein_coding MGP_C3HHeJ_T0021467.1 MGP_C3HHeJ_G0016162.1 mouse_genomes_project 1 120866989 120983667 - Gli2 protein_coding processed_transcript MGP_C3HHeJ_T0019475.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975664 51140842 - MGP_C3HHeJ_P0019475 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019476.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975880 51140712 - MGP_C3HHeJ_P0019476 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019477.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975887 51132083 - MGP_C3HHeJ_P0019477 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019478.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50975892 51140699 - MGP_C3HHeJ_P0019478 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019479.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50986432 50990559 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019480.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50988610 50996980 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019481.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50988678 50993481 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019482.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 50992964 51002450 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019483.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51002406 51021260 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019484.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51005732 51008239 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019485.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51023512 51121304 - MGP_C3HHeJ_P0019485 Myo1b protein_coding protein_coding MGP_C3HHeJ_T0019486.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51025238 51047680 - Myo1b protein_coding processed_transcript MGP_C3HHeJ_T0019487.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51037801 51140683 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0019488.1 MGP_C3HHeJ_G0015775.1 mouse_genomes_project 1 51089544 51140692 - Myo1b protein_coding retained_intron MGP_C3HHeJ_T0005895.1 MGP_C3HHeJ_G0004931.1 mouse_genomes_project 1 168109591 168111139 + Gm32391 lincRNA lincRNA MGP_C3HHeJ_T0023420.1 MGP_C3HHeJ_G0016580.1 mouse_genomes_project 1 178586586 178594780 - MGP_C3HHeJ_P0023420 protein_coding protein_coding MGP_C3HHeJ_T0023421.1 MGP_C3HHeJ_G0016580.1 mouse_genomes_project 1 178587816 178594835 - protein_coding retained_intron MGP_C3HHeJ_T0098616.1 MGP_C3HHeJ_G0036810.1 mouse_genomes_project 1 57054747 57054904 + Gm24014 snRNA snRNA MGP_C3HHeJ_T0098333.1 MGP_C3HHeJ_G0036544.1 mouse_genomes_project 1 164273954 164274594 - Gm37328 sense_intronic sense_intronic MGP_C3HHeJ_T0012233.1 MGP_C3HHeJ_G0010337.1 mouse_genomes_project 1 176020907 176021459 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000633.1 MGP_C3HHeJ_G0000578.1 mouse_genomes_project 1 141883122 141885753 + TEC TEC MGP_C3HHeJ_T0020149.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756687 71779213 + MGP_C3HHeJ_P0020149 Atic protein_coding protein_coding MGP_C3HHeJ_T0020150.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756716 71762736 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020151.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756716 71759489 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020152.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756716 71772901 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020153.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71756750 71762736 + Atic protein_coding retained_intron MGP_C3HHeJ_T0020154.1 MGP_C3HHeJ_G0015895.1 mouse_genomes_project 1 71768403 71772498 + Atic protein_coding retained_intron MGP_C3HHeJ_T0022849.1 MGP_C3HHeJ_G0016438.1 mouse_genomes_project 1 167315896 167336751 - MGP_C3HHeJ_P0022849 Mettl11b protein_coding protein_coding MGP_C3HHeJ_T0022850.1 MGP_C3HHeJ_G0016438.1 mouse_genomes_project 1 167316639 167336751 - MGP_C3HHeJ_P0022850 Mettl11b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016811.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138732115 138737076 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0016812.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138733656 138737064 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0016813.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138733656 138737064 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0016814.1 MGP_C3HHeJ_G0014872.1 mouse_genomes_project 1 138733656 138737064 - Gm15850 processed_transcript processed_transcript MGP_C3HHeJ_T0011931.1 MGP_C3HHeJ_G0010035.1 mouse_genomes_project 1 51163847 51164259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018598.1 MGP_C3HHeJ_G0015599.1 mouse_genomes_project 1 6829840 6858829 - MGP_C3HHeJ_P0018598 Vcpip1 protein_coding protein_coding MGP_C3HHeJ_T0016774.1 MGP_C3HHeJ_G0014860.1 mouse_genomes_project 1 64602167 64613158 - 2810408I11Rik processed_transcript antisense MGP_C3HHeJ_T0016775.1 MGP_C3HHeJ_G0014860.1 mouse_genomes_project 1 64605568 64613107 - 2810408I11Rik processed_transcript antisense MGP_C3HHeJ_T0016776.1 MGP_C3HHeJ_G0014860.1 mouse_genomes_project 1 64611622 64613127 - 2810408I11Rik processed_transcript retained_intron MGP_C3HHeJ_T0000474.1 MGP_C3HHeJ_G0000421.1 mouse_genomes_project 1 66797988 66800169 + TEC TEC MGP_C3HHeJ_T0005926.1 MGP_C3HHeJ_G0004958.1 mouse_genomes_project 1 182303626 182305028 - 2310043L19Rik lincRNA lincRNA MGP_C3HHeJ_T0020747.1 MGP_C3HHeJ_G0016003.1 mouse_genomes_project 1 86617315 86620587 + MGP_C3HHeJ_P0020747 4933407L21Rik protein_coding protein_coding MGP_C3HHeJ_T0020748.1 MGP_C3HHeJ_G0016003.1 mouse_genomes_project 1 86617559 86629450 + MGP_C3HHeJ_P0020748 4933407L21Rik protein_coding protein_coding MGP_C3HHeJ_T0020749.1 MGP_C3HHeJ_G0016003.1 mouse_genomes_project 1 86617718 86620587 + 4933407L21Rik protein_coding retained_intron MGP_C3HHeJ_T0019150.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35533481 35577535 + MGP_C3HHeJ_P0019150 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0019151.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35538113 35597844 + MGP_C3HHeJ_P0019151 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0019152.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35538113 35597844 + MGP_C3HHeJ_P0019152 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0019153.1 MGP_C3HHeJ_G0015706.1 mouse_genomes_project 1 35538934 35599073 + MGP_C3HHeJ_P0019153 Cnga3 protein_coding protein_coding MGP_C3HHeJ_T0012140.1 MGP_C3HHeJ_G0010244.1 mouse_genomes_project 1 133844512 133844768 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012015.1 MGP_C3HHeJ_G0010119.1 mouse_genomes_project 1 79937024 79938383 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011791.1 MGP_C3HHeJ_G0009895.1 mouse_genomes_project 1 6916449 6916806 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024057.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198566374 198585282 + MGP_C3HHeJ_P0024057 Irf6 protein_coding protein_coding MGP_C3HHeJ_T0024058.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198566417 198580127 + Irf6 protein_coding retained_intron MGP_C3HHeJ_T0024059.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198569926 198577439 + Irf6 protein_coding retained_intron MGP_C3HHeJ_T0024061.1 MGP_C3HHeJ_G0016719.1 mouse_genomes_project 1 198581761 198582748 + Irf6 protein_coding retained_intron MGP_C3HHeJ_T0000471.1 MGP_C3HHeJ_G0000418.1 mouse_genomes_project 1 66758959 66761514 - TEC TEC MGP_C3HHeJ_T0005593.1 MGP_C3HHeJ_G0004699.1 mouse_genomes_project 1 22680984 22681636 - Gm29414 lincRNA lincRNA MGP_C3HHeJ_T0002710.1 MGP_C3HHeJ_G0002580.1 mouse_genomes_project 1 33027768 33030317 - Gm38336 antisense antisense MGP_C3HHeJ_T0098626.1 MGP_C3HHeJ_G0036820.1 mouse_genomes_project 1 70790736 70790843 + Gm23422 snRNA snRNA MGP_C3HHeJ_T0022114.1 MGP_C3HHeJ_G0016303.1 mouse_genomes_project 1 138653218 138653785 + MGP_C3HHeJ_P0022114 Ascl5 protein_coding protein_coding MGP_C3HHeJ_T0023223.1 MGP_C3HHeJ_G0016522.1 mouse_genomes_project 1 175274097 175276441 - MGP_C3HHeJ_P0023223 Klhdc9 protein_coding protein_coding MGP_C3HHeJ_T0021768.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428296 134448492 + MGP_C3HHeJ_P0021768 Elk4 protein_coding protein_coding MGP_C3HHeJ_T0021769.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428564 134445712 + MGP_C3HHeJ_P0021769 Elk4 protein_coding protein_coding MGP_C3HHeJ_T0021770.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428787 134435214 + Elk4 protein_coding processed_transcript MGP_C3HHeJ_T0021771.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428797 134435072 + Elk4 protein_coding processed_transcript MGP_C3HHeJ_T0021772.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134428985 134439383 + MGP_C3HHeJ_P0021772 Elk4 protein_coding protein_coding MGP_C3HHeJ_T0021773.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134438885 134454597 + MGP_C3HHeJ_P0021773 Elk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021774.1 MGP_C3HHeJ_G0016233.1 mouse_genomes_project 1 134439520 134453679 + Elk4 protein_coding processed_transcript MGP_C3HHeJ_T0005937.1 MGP_C3HHeJ_G0004966.1 mouse_genomes_project 1 186881134 186891022 + lincRNA lincRNA MGP_C3HHeJ_T0005938.1 MGP_C3HHeJ_G0004966.1 mouse_genomes_project 1 186884071 186891000 + lincRNA lincRNA MGP_C3HHeJ_T0005939.1 MGP_C3HHeJ_G0004966.1 mouse_genomes_project 1 186889738 186892055 + lincRNA lincRNA MGP_C3HHeJ_T0000610.1 MGP_C3HHeJ_G0000556.1 mouse_genomes_project 1 138065574 138066595 - TEC TEC MGP_C3HHeJ_T0011792.1 MGP_C3HHeJ_G0009896.1 mouse_genomes_project 1 7852744 7853236 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005857.1 MGP_C3HHeJ_G0004902.1 mouse_genomes_project 1 142147757 142153369 + Gm34816 lincRNA lincRNA MGP_C3HHeJ_T0000364.1 MGP_C3HHeJ_G0000314.1 mouse_genomes_project 1 17100037 17103076 + TEC TEC MGP_C3HHeJ_T0023261.1 MGP_C3HHeJ_G0016533.1 mouse_genomes_project 1 175962049 175984942 + MGP_C3HHeJ_P0023261 Cd48 protein_coding protein_coding MGP_C3HHeJ_T0023262.1 MGP_C3HHeJ_G0016533.1 mouse_genomes_project 1 175962050 175984940 + MGP_C3HHeJ_P0023262 Cd48 protein_coding protein_coding MGP_C3HHeJ_T0000719.1 MGP_C3HHeJ_G0000664.1 mouse_genomes_project 1 181377165 181378584 - TEC TEC MGP_C3HHeJ_T0012106.1 MGP_C3HHeJ_G0010210.1 mouse_genomes_project 1 120233335 120234498 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002823.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135725086 135744451 - Gm19461 antisense antisense MGP_C3HHeJ_T0002824.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135725896 135731797 - Gm19461 antisense antisense MGP_C3HHeJ_T0002825.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135728591 135728981 - Gm19461 antisense antisense MGP_C3HHeJ_T0002826.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135728971 135731031 - Gm19461 antisense antisense MGP_C3HHeJ_T0002827.1 MGP_C3HHeJ_G0002666.1 mouse_genomes_project 1 135731219 135733351 - Gm19461 antisense antisense MGP_C3HHeJ_T0011978.1 MGP_C3HHeJ_G0010082.1 mouse_genomes_project 1 62891770 62892138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101590.1 MGP_C3HHeJ_G0039556.1 mouse_genomes_project 1 173677447 173677651 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012096.1 MGP_C3HHeJ_G0010200.1 mouse_genomes_project 1 114029575 114030240 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005963.1 MGP_C3HHeJ_G0004983.1 mouse_genomes_project 1 190242631 190250192 + Gm37662 lincRNA lincRNA MGP_C3HHeJ_T0002790.1 MGP_C3HHeJ_G0002642.1 mouse_genomes_project 1 94001286 94008031 - Gm29480 antisense antisense MGP_C3HHeJ_T0005572.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071469 7073629 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005573.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071533 7072740 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005574.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071535 7073628 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005575.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071535 7072414 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0005576.1 MGP_C3HHeJ_G0004683.1 mouse_genomes_project 1 7071535 7073614 - Snhg6 lincRNA lincRNA MGP_C3HHeJ_T0011835.1 MGP_C3HHeJ_G0009939.1 mouse_genomes_project 1 22669404 22670207 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019210.1 MGP_C3HHeJ_G0015717.1 mouse_genomes_project 1 36307711 36309978 - Lyg1 protein_coding processed_transcript MGP_C3HHeJ_T0019211.1 MGP_C3HHeJ_G0015717.1 mouse_genomes_project 1 36307711 36318740 - MGP_C3HHeJ_P0019211 Lyg1 protein_coding protein_coding MGP_C3HHeJ_T0019212.1 MGP_C3HHeJ_G0015717.1 mouse_genomes_project 1 36307713 36318740 - MGP_C3HHeJ_P0019212 Lyg1 protein_coding protein_coding MGP_C3HHeJ_T0023282.1 MGP_C3HHeJ_G0016539.1 mouse_genomes_project 1 176351890 176357175 - MGP_C3HHeJ_P0023282 Nhlh1 protein_coding protein_coding MGP_C3HHeJ_T0012155.1 MGP_C3HHeJ_G0010259.1 mouse_genomes_project 1 141716005 141716642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012100.1 MGP_C3HHeJ_G0010204.1 mouse_genomes_project 1 115470896 115471432 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000489.1 MGP_C3HHeJ_G0000436.1 mouse_genomes_project 1 74824670 74827533 - TEC TEC MGP_C3HHeJ_T0019326.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39047183 39102165 + MGP_C3HHeJ_P0019326 Slc9a4 protein_coding protein_coding MGP_C3HHeJ_T0019327.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39047306 39052524 + Slc9a4 protein_coding processed_transcript MGP_C3HHeJ_T0019328.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39069690 39072001 + Slc9a4 protein_coding processed_transcript MGP_C3HHeJ_T0019329.1 MGP_C3HHeJ_G0015741.1 mouse_genomes_project 1 39100407 39101856 + Slc9a4 protein_coding retained_intron MGP_C3HHeJ_T0009397.1 MGP_C3HHeJ_G0007530.1 mouse_genomes_project 1 42576845 42576955 - Gm24180 miRNA miRNA MGP_C3HHeJ_T0000515.1 MGP_C3HHeJ_G0000462.1 mouse_genomes_project 1 85418060 85422763 - TEC TEC MGP_C3HHeJ_T0020609.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80231434 80298448 - MGP_C3HHeJ_P0020609 Serpine2 protein_coding protein_coding MGP_C3HHeJ_T0020610.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80234032 80259664 - MGP_C3HHeJ_P0020610 Serpine2 protein_coding protein_coding MGP_C3HHeJ_T0020611.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80240243 80300952 - MGP_C3HHeJ_P0020611 Serpine2 protein_coding protein_coding MGP_C3HHeJ_T0020612.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80253008 80298448 - Serpine2 protein_coding retained_intron MGP_C3HHeJ_T0020613.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80255259 80258646 - Serpine2 protein_coding retained_intron MGP_C3HHeJ_T0020614.1 MGP_C3HHeJ_G0015976.1 mouse_genomes_project 1 80295945 80297083 - Serpine2 protein_coding retained_intron MGP_C3HHeJ_T0002939.1 MGP_C3HHeJ_G0002755.1 mouse_genomes_project 1 198621681 198646474 + 4930570N18Rik antisense antisense MGP_C3HHeJ_T0000329.1 MGP_C3HHeJ_G0000279.1 mouse_genomes_project 1 1851328 1852481 - TEC TEC MGP_C3HHeJ_T0022614.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160495041 160791677 - MGP_C3HHeJ_P0022614 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022615.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160500390 160791016 - MGP_C3HHeJ_P0022615 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022616.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160539956 160617666 - MGP_C3HHeJ_P0022616 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022617.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160540149 160629618 - MGP_C3HHeJ_P0022617 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022618.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160543084 160545427 - Rasal2 protein_coding processed_transcript MGP_C3HHeJ_T0022619.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160543084 160605262 - MGP_C3HHeJ_P0022619 Rasal2 protein_coding protein_coding MGP_C3HHeJ_T0022620.1 MGP_C3HHeJ_G0016397.1 mouse_genomes_project 1 160658160 160791677 - Rasal2 protein_coding retained_intron MGP_C3HHeJ_T0000597.1 MGP_C3HHeJ_G0000544.1 mouse_genomes_project 1 133737964 133739346 - TEC TEC MGP_C3HHeJ_T0023826.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190450503 190498123 - MGP_C3HHeJ_P0023826 Iars2 protein_coding protein_coding MGP_C3HHeJ_T0023827.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190451346 190454064 - Iars2 protein_coding processed_transcript MGP_C3HHeJ_T0023828.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190460825 190498123 - MGP_C3HHeJ_P0023828 Iars2 protein_coding protein_coding MGP_C3HHeJ_T0023829.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190478713 190498123 - MGP_C3HHeJ_P0023829 Iars2 protein_coding protein_coding MGP_C3HHeJ_T0023830.1 MGP_C3HHeJ_G0016675.1 mouse_genomes_project 1 190489910 190498123 - Iars2 protein_coding retained_intron MGP_C3HHeJ_T0019692.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57552992 57567976 - MGP_C3HHeJ_P0019692 Kctd18 protein_coding protein_coding MGP_C3HHeJ_T0019693.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57553139 57568020 - MGP_C3HHeJ_P0019693 Kctd18 protein_coding protein_coding MGP_C3HHeJ_T0019694.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57553144 57567416 - MGP_C3HHeJ_P0019694 Kctd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019695.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57553963 57617175 - MGP_C3HHeJ_P0019695 Kctd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019696.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57554471 57567940 - MGP_C3HHeJ_P0019696 Kctd18 protein_coding protein_coding MGP_C3HHeJ_T0019697.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57554583 57561339 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019698.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57554611 57559994 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019699.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57557945 57567944 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019700.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57559049 57560873 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019701.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57561457 57567971 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0019702.1 MGP_C3HHeJ_G0015813.1 mouse_genomes_project 1 57561493 57567971 - Kctd18 protein_coding retained_intron MGP_C3HHeJ_T0011902.1 MGP_C3HHeJ_G0010006.1 mouse_genomes_project 1 43539273 43539730 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009455.1 MGP_C3HHeJ_G0007588.1 mouse_genomes_project 1 163813333 163813442 - Mir1927 miRNA miRNA MGP_C3HHeJ_T0023009.1 MGP_C3HHeJ_G0016474.1 mouse_genomes_project 1 170389681 170407382 - MGP_C3HHeJ_P0023009 Fmo9 protein_coding protein_coding MGP_C3HHeJ_T0000685.1 MGP_C3HHeJ_G0000630.1 mouse_genomes_project 1 164275646 164276073 - TEC TEC MGP_C3HHeJ_T0019858.1 MGP_C3HHeJ_G0015840.1 mouse_genomes_project 1 59537783 59662795 + MGP_C3HHeJ_P0019858 Bmpr2 protein_coding protein_coding MGP_C3HHeJ_T0019859.1 MGP_C3HHeJ_G0015840.1 mouse_genomes_project 1 59630177 59632778 + Bmpr2 protein_coding retained_intron MGP_C3HHeJ_T0019860.1 MGP_C3HHeJ_G0015840.1 mouse_genomes_project 1 59631903 59636622 + Bmpr2 protein_coding retained_intron MGP_C3HHeJ_T0020720.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85447158 85518769 + MGP_C3HHeJ_P0020720 Fbxo36 protein_coding protein_coding MGP_C3HHeJ_T0020721.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85447170 85518769 + Fbxo36 protein_coding processed_transcript MGP_C3HHeJ_T0020722.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85479893 85518769 + Fbxo36 protein_coding processed_transcript MGP_C3HHeJ_T0020723.1 MGP_C3HHeJ_G0015997.1 mouse_genomes_project 1 85482910 85518769 + Fbxo36 protein_coding processed_transcript MGP_C3HHeJ_T0024103.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200112411 200115073 + Plxna2 protein_coding retained_intron MGP_C3HHeJ_T0024104.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200114030 200313869 + MGP_C3HHeJ_P0024104 Plxna2 protein_coding protein_coding MGP_C3HHeJ_T0024105.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200138842 200153580 + Plxna2 protein_coding processed_transcript MGP_C3HHeJ_T0024106.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200260779 200282848 + MGP_C3HHeJ_P0024106 Plxna2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024107.1 MGP_C3HHeJ_G0016726.1 mouse_genomes_project 1 200300925 200311227 + Plxna2 protein_coding retained_intron MGP_C3HHeJ_T0012080.1 MGP_C3HHeJ_G0010184.1 mouse_genomes_project 1 108113731 108114002 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012143.1 MGP_C3HHeJ_G0010247.1 mouse_genomes_project 1 136544797 136545735 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018818.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 17520774 18081141 - MGP_C3HHeJ_P0018818 Pkhd1 protein_coding protein_coding MGP_C3HHeJ_T0018819.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 17840823 17878432 - Pkhd1 protein_coding processed_transcript MGP_C3HHeJ_T0018820.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 18048372 18081141 - Pkhd1 protein_coding retained_intron MGP_C3HHeJ_T0018821.1 MGP_C3HHeJ_G0015640.1 mouse_genomes_project 1 18069296 18081117 - Pkhd1 protein_coding processed_transcript MGP_C3HHeJ_T0101092.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160791433 160799896 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101093.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160791721 160799893 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101094.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160792059 160792353 + transcribed_processed_pseudogene TEC MGP_C3HHeJ_T0101095.1 MGP_C3HHeJ_G0039280.1 mouse_genomes_project 1 160799561 160799812 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0012225.1 MGP_C3HHeJ_G0010329.1 mouse_genomes_project 1 173239047 173239495 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000723.1 MGP_C3HHeJ_G0000668.1 mouse_genomes_project 1 181680315 181681847 - TEC TEC MGP_C3HHeJ_T0002874.1 MGP_C3HHeJ_G0002704.1 mouse_genomes_project 1 169185923 169187300 - Gm38325 antisense antisense MGP_C3HHeJ_T0011759.1 MGP_C3HHeJ_G0009863.1 mouse_genomes_project 1 2151507 2153095 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002841.1 MGP_C3HHeJ_G0002679.1 mouse_genomes_project 1 149829047 149867109 - Gm15584 antisense antisense MGP_C3HHeJ_T0012137.1 MGP_C3HHeJ_G0010241.1 mouse_genomes_project 1 131015653 131016075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019754.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58078432 58123330 - MGP_C3HHeJ_P0019754 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0019755.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58079865 58119637 - MGP_C3HHeJ_P0019755 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0019756.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58097499 58098638 - Orc2 protein_coding retained_intron MGP_C3HHeJ_T0019757.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58101407 58123146 - MGP_C3HHeJ_P0019757 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0019758.1 MGP_C3HHeJ_G0015823.1 mouse_genomes_project 1 58117801 58123176 - MGP_C3HHeJ_P0019758 Orc2 protein_coding protein_coding MGP_C3HHeJ_T0022395.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156013433 156042231 + MGP_C3HHeJ_P0022395 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022396.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156013948 156030429 + MGP_C3HHeJ_P0022396 protein_coding protein_coding MGP_C3HHeJ_T0022397.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156014089 156018866 + protein_coding retained_intron MGP_C3HHeJ_T0022398.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156017117 156030428 + protein_coding retained_intron MGP_C3HHeJ_T0022399.1 MGP_C3HHeJ_G0016358.1 mouse_genomes_project 1 156029705 156030621 + protein_coding retained_intron MGP_C3HHeJ_T0101499.1 MGP_C3HHeJ_G0039489.1 mouse_genomes_project 1 63830381 63848404 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0009475.1 MGP_C3HHeJ_G0007608.1 mouse_genomes_project 1 190480449 190480561 + Mir215 miRNA miRNA MGP_C3HHeJ_T0011960.1 MGP_C3HHeJ_G0010064.1 mouse_genomes_project 1 59923973 59925706 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016865.1 MGP_C3HHeJ_G0014887.1 mouse_genomes_project 1 182112014 182114337 + Gm29856 processed_transcript processed_transcript MGP_C3HHeJ_T0016866.1 MGP_C3HHeJ_G0014887.1 mouse_genomes_project 1 182113315 182114338 + Gm29856 processed_transcript processed_transcript MGP_C3HHeJ_T0099823.1 MGP_C3HHeJ_G0038017.1 mouse_genomes_project 1 11011069 11011200 - Gm26273 snoRNA snoRNA MGP_C3HHeJ_T0011846.1 MGP_C3HHeJ_G0009950.1 mouse_genomes_project 1 26845042 26845349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012103.1 MGP_C3HHeJ_G0010207.1 mouse_genomes_project 1 118626990 118627385 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020192.1 MGP_C3HHeJ_G0015905.1 mouse_genomes_project 1 73081942 73112447 + MGP_C3HHeJ_P0020192 Igfbp2 protein_coding protein_coding MGP_C3HHeJ_T0020193.1 MGP_C3HHeJ_G0015905.1 mouse_genomes_project 1 73108651 73112101 + Igfbp2 protein_coding retained_intron MGP_C3HHeJ_T0101567.1 MGP_C3HHeJ_G0039533.1 mouse_genomes_project 1 93719447 93719630 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0019522.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51690585 51735849 - MGP_C3HHeJ_P0019522 Nab1 protein_coding protein_coding MGP_C3HHeJ_T0019523.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51690585 51735470 - MGP_C3HHeJ_P0019523 Nab1 protein_coding protein_coding MGP_C3HHeJ_T0019524.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51692511 51725884 - MGP_C3HHeJ_P0019524 Nab1 protein_coding protein_coding MGP_C3HHeJ_T0019525.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51692534 51700353 - Nab1 protein_coding retained_intron MGP_C3HHeJ_T0019526.1 MGP_C3HHeJ_G0015779.1 mouse_genomes_project 1 51725457 51735485 - Nab1 protein_coding processed_transcript MGP_C3HHeJ_T0097966.1 MGP_C3HHeJ_G0036178.1 mouse_genomes_project 1 140694725 140694845 - Gm23782 rRNA rRNA MGP_C3HHeJ_T0012110.1 MGP_C3HHeJ_G0010214.1 mouse_genomes_project 1 121164546 121165526 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098672.1 MGP_C3HHeJ_G0036866.1 mouse_genomes_project 1 176024280 176024387 - Gm22950 snRNA snRNA MGP_C3HHeJ_T0002863.1 MGP_C3HHeJ_G0002697.1 mouse_genomes_project 1 165561934 165619941 + Gm38304 antisense antisense MGP_C3HHeJ_T0011917.1 MGP_C3HHeJ_G0010021.1 mouse_genomes_project 1 47410077 47411063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012017.1 MGP_C3HHeJ_G0010121.1 mouse_genomes_project 1 80530848 80531112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000454.1 MGP_C3HHeJ_G0000401.1 mouse_genomes_project 1 59717421 59722825 + TEC TEC MGP_C3HHeJ_T0005662.1 MGP_C3HHeJ_G0004746.1 mouse_genomes_project 1 56080349 56082402 + Gm28240 lincRNA lincRNA MGP_C3HHeJ_T0005571.1 MGP_C3HHeJ_G0004682.1 mouse_genomes_project 1 6751936 6753352 - Gm29520 lincRNA lincRNA MGP_C3HHeJ_T0023800.1 MGP_C3HHeJ_G0016668.1 mouse_genomes_project 1 189113371 189114643 - 1700056E22Rik protein_coding antisense MGP_C3HHeJ_T0023801.1 MGP_C3HHeJ_G0016668.1 mouse_genomes_project 1 189113373 189114340 - MGP_C3HHeJ_P0023801 1700056E22Rik protein_coding protein_coding MGP_C3HHeJ_T0011756.1 MGP_C3HHeJ_G0009860.1 mouse_genomes_project 1 1803535 1804166 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009411.1 MGP_C3HHeJ_G0007544.1 mouse_genomes_project 1 67684501 67684579 + Gm22548 miRNA miRNA MGP_C3HHeJ_T0005945.1 MGP_C3HHeJ_G0004971.1 mouse_genomes_project 1 188423988 188427295 - lincRNA lincRNA MGP_C3HHeJ_T0098620.1 MGP_C3HHeJ_G0036814.1 mouse_genomes_project 1 63486871 63486974 - Gm22281 snRNA snRNA MGP_C3HHeJ_T0022604.1 MGP_C3HHeJ_G0016395.1 mouse_genomes_project 1 160188259 160208580 + MGP_C3HHeJ_P0022604 Angptl1 protein_coding protein_coding MGP_C3HHeJ_T0022605.1 MGP_C3HHeJ_G0016395.1 mouse_genomes_project 1 160188645 160195285 + MGP_C3HHeJ_P0022605 Angptl1 protein_coding protein_coding MGP_C3HHeJ_T0002921.1 MGP_C3HHeJ_G0002744.1 mouse_genomes_project 1 195503998 195504962 + Gm28172 antisense antisense MGP_C3HHeJ_T0009412.1 MGP_C3HHeJ_G0007545.1 mouse_genomes_project 1 74154903 74155002 - Mir6351 miRNA miRNA MGP_C3HHeJ_T0005841.1 MGP_C3HHeJ_G0004891.1 mouse_genomes_project 1 139237389 139239825 - 4933409D19Rik lincRNA lincRNA MGP_C3HHeJ_T0005927.1 MGP_C3HHeJ_G0004959.1 mouse_genomes_project 1 185164910 185175872 - Gm37336 lincRNA lincRNA MGP_C3HHeJ_T0005928.1 MGP_C3HHeJ_G0004959.1 mouse_genomes_project 1 185175469 185175937 - Gm37336 lincRNA lincRNA MGP_C3HHeJ_T0019593.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53692986 53714883 + Ccdc150 protein_coding retained_intron MGP_C3HHeJ_T0019594.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53692986 53829899 + MGP_C3HHeJ_P0019594 Ccdc150 protein_coding protein_coding MGP_C3HHeJ_T0019595.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53693025 53829642 + MGP_C3HHeJ_P0019595 Ccdc150 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019596.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53775257 53829780 + Ccdc150 protein_coding processed_transcript MGP_C3HHeJ_T0019597.1 MGP_C3HHeJ_G0015794.1 mouse_genomes_project 1 53816046 53829775 + Ccdc150 protein_coding retained_intron MGP_C3HHeJ_T0009429.1 MGP_C3HHeJ_G0007562.1 mouse_genomes_project 1 93565789 93565849 - Mir6900 miRNA miRNA MGP_C3HHeJ_T0012221.1 MGP_C3HHeJ_G0010325.1 mouse_genomes_project 1 170494634 170497061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000400.1 MGP_C3HHeJ_G0000348.1 mouse_genomes_project 1 30820797 30823267 + TEC TEC MGP_C3HHeJ_T0020144.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71442370 71617807 - MGP_C3HHeJ_P0020144 Abca12 protein_coding protein_coding MGP_C3HHeJ_T0020145.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71486051 71503112 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0020146.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71509311 71617807 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0020147.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71532146 71535315 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0020148.1 MGP_C3HHeJ_G0015894.1 mouse_genomes_project 1 71561137 71617793 - Abca12 protein_coding retained_intron MGP_C3HHeJ_T0024117.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200601372 200636765 - MGP_C3HHeJ_P0024117 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024118.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200602649 200636744 - MGP_C3HHeJ_P0024118 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024119.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200609140 200612815 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0024120.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200609236 200636982 - MGP_C3HHeJ_P0024120 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024121.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200609242 200623062 - MGP_C3HHeJ_P0024121 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024122.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200620073 200634883 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0024123.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200620200 200637007 - MGP_C3HHeJ_P0024123 Cr1l protein_coding protein_coding MGP_C3HHeJ_T0024124.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200631335 200636955 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0024125.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200634614 200636751 - MGP_C3HHeJ_P0024125 Cr1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024126.1 MGP_C3HHeJ_G0016729.1 mouse_genomes_project 1 200635066 200636776 - Cr1l protein_coding retained_intron MGP_C3HHeJ_T0020945.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89026332 89119660 + protein_coding retained_intron MGP_C3HHeJ_T0020946.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89026332 89122337 + MGP_C3HHeJ_P0020946 protein_coding protein_coding MGP_C3HHeJ_T0020947.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89026398 89117572 + MGP_C3HHeJ_P0020947 protein_coding protein_coding MGP_C3HHeJ_T0020948.1 MGP_C3HHeJ_G0016044.1 mouse_genomes_project 1 89029942 89122337 + MGP_C3HHeJ_P0020948 protein_coding protein_coding MGP_C3HHeJ_T0098314.1 MGP_C3HHeJ_G0036526.1 mouse_genomes_project 1 51937487 51939978 - Gm29670 sense_intronic sense_intronic MGP_C3HHeJ_T0012177.1 MGP_C3HHeJ_G0010281.1 mouse_genomes_project 1 152124534 152126569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005758.1 MGP_C3HHeJ_G0004821.1 mouse_genomes_project 1 91490139 91491250 - Gm28722 lincRNA lincRNA MGP_C3HHeJ_T0021091.1 MGP_C3HHeJ_G0016079.1 mouse_genomes_project 1 92890276 92937517 + MGP_C3HHeJ_P0021091 Twist2 protein_coding protein_coding MGP_C3HHeJ_T0021092.1 MGP_C3HHeJ_G0016079.1 mouse_genomes_project 1 92890285 92892806 + MGP_C3HHeJ_P0021092 Twist2 protein_coding protein_coding MGP_C3HHeJ_T0022191.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141694819 141796197 + MGP_C3HHeJ_P0022191 Dennd1b protein_coding protein_coding MGP_C3HHeJ_T0022192.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141695093 141903942 + MGP_C3HHeJ_P0022192 Dennd1b protein_coding protein_coding MGP_C3HHeJ_T0022193.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141695112 141818947 + MGP_C3HHeJ_P0022193 Dennd1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022194.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141695253 141906848 + MGP_C3HHeJ_P0022194 Dennd1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022195.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141699229 141903942 + MGP_C3HHeJ_P0022195 Dennd1b protein_coding protein_coding MGP_C3HHeJ_T0022196.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141786208 141788973 + Dennd1b protein_coding retained_intron MGP_C3HHeJ_T0022197.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141818942 141864447 + Dennd1b protein_coding retained_intron MGP_C3HHeJ_T0022198.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141854204 141903882 + Dennd1b protein_coding processed_transcript MGP_C3HHeJ_T0022199.1 MGP_C3HHeJ_G0016319.1 mouse_genomes_project 1 141861802 141901993 + Dennd1b protein_coding processed_transcript MGP_C3HHeJ_T0005911.1 MGP_C3HHeJ_G0004944.1 mouse_genomes_project 1 170711982 170734534 - Gm16701 lincRNA lincRNA MGP_C3HHeJ_T0000453.1 MGP_C3HHeJ_G0000400.1 mouse_genomes_project 1 59670755 59671476 - TEC TEC MGP_C3HHeJ_T0019389.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749700 42766452 - MGP_C3HHeJ_P0019389 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019390.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749703 42766499 - MGP_C3HHeJ_P0019390 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019391.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749897 42766423 - MGP_C3HHeJ_P0019391 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019392.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749897 42766404 - MGP_C3HHeJ_P0019392 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019393.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749947 42766484 - MGP_C3HHeJ_P0019393 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019394.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749948 42766502 - MGP_C3HHeJ_P0019394 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019395.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42749949 42765738 - MGP_C3HHeJ_P0019395 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019396.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42750116 42766494 - MGP_C3HHeJ_P0019396 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019397.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42750988 42766462 - MGP_C3HHeJ_P0019397 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019398.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751104 42766074 - MGP_C3HHeJ_P0019398 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019399.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751590 42766475 - MGP_C3HHeJ_P0019399 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019400.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751596 42766498 - MGP_C3HHeJ_P0019400 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0019401.1 MGP_C3HHeJ_G0015757.1 mouse_genomes_project 1 42751602 42764070 - MGP_C3HHeJ_P0019401 Tex30 protein_coding protein_coding MGP_C3HHeJ_T0009392.1 MGP_C3HHeJ_G0007525.1 mouse_genomes_project 1 34610403 34610480 - Mir6898 miRNA miRNA MGP_C3HHeJ_T0098317.1 MGP_C3HHeJ_G0036529.1 mouse_genomes_project 1 69818900 69820776 - Gm28112 sense_intronic sense_intronic MGP_C3HHeJ_T0000479.1 MGP_C3HHeJ_G0000426.1 mouse_genomes_project 1 68725840 68727206 - TEC TEC MGP_C3HHeJ_T0012170.1 MGP_C3HHeJ_G0010274.1 mouse_genomes_project 1 149400517 149401118 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000769.1 MGP_C3HHeJ_G0000711.1 mouse_genomes_project 1 198683276 198685497 - TEC TEC MGP_C3HHeJ_T0000574.1 MGP_C3HHeJ_G0000521.1 mouse_genomes_project 1 126575387 126579052 - TEC TEC MGP_C3HHeJ_T0005946.1 MGP_C3HHeJ_G0004972.1 mouse_genomes_project 1 188525512 188525895 + Gm37986 lincRNA lincRNA MGP_C3HHeJ_T0021120.1 MGP_C3HHeJ_G0016086.1 mouse_genomes_project 1 93739501 93740592 + MGP_C3HHeJ_P0021120 Olfr1412 protein_coding protein_coding MGP_C3HHeJ_T0012052.1 MGP_C3HHeJ_G0010156.1 mouse_genomes_project 1 95669959 95671239 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099826.1 MGP_C3HHeJ_G0038020.1 mouse_genomes_project 1 13099950 13100082 + Gm25168 snoRNA snoRNA MGP_C3HHeJ_T0020918.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88701359 88798698 + MGP_C3HHeJ_P0020918 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0020919.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88729105 88766288 + Dgkd protein_coding retained_intron MGP_C3HHeJ_T0020920.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88768441 88772515 + Dgkd protein_coding retained_intron MGP_C3HHeJ_T0020921.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88782525 88792461 + MGP_C3HHeJ_P0020921 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0020922.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88788604 88799388 + MGP_C3HHeJ_P0020922 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0020923.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88789490 88794473 + Dgkd protein_coding retained_intron MGP_C3HHeJ_T0020924.1 MGP_C3HHeJ_G0016037.1 mouse_genomes_project 1 88792592 88799386 + MGP_C3HHeJ_P0020924 Dgkd protein_coding protein_coding MGP_C3HHeJ_T0011770.1 MGP_C3HHeJ_G0009874.1 mouse_genomes_project 1 4265413 4265801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012159.1 MGP_C3HHeJ_G0010263.1 mouse_genomes_project 1 144139770 144140332 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011936.1 MGP_C3HHeJ_G0010040.1 mouse_genomes_project 1 51990117 51990528 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000735.1 MGP_C3HHeJ_G0000679.1 mouse_genomes_project 1 185340549 185341421 + TEC TEC MGP_C3HHeJ_T0021865.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135720426 135780254 + MGP_C3HHeJ_P0021865 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021866.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135731685 135741405 + MGP_C3HHeJ_P0021866 Plekha6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021867.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135731685 135775854 + MGP_C3HHeJ_P0021867 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021868.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135733687 135778035 + MGP_C3HHeJ_P0021868 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021869.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135744098 135746977 + Plekha6 protein_coding processed_transcript MGP_C3HHeJ_T0021870.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135744777 135775854 + MGP_C3HHeJ_P0021870 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021871.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135748890 135756454 + MGP_C3HHeJ_P0021871 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021872.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135748896 135759598 + MGP_C3HHeJ_P0021872 Plekha6 protein_coding protein_coding MGP_C3HHeJ_T0021873.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135768568 135771045 + Plekha6 protein_coding retained_intron MGP_C3HHeJ_T0021874.1 MGP_C3HHeJ_G0016250.1 mouse_genomes_project 1 135774769 135778436 + Plekha6 protein_coding retained_intron MGP_C3HHeJ_T0020775.1 MGP_C3HHeJ_G0016009.1 mouse_genomes_project 1 86827970 86861177 + MGP_C3HHeJ_P0020775 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099885.1 MGP_C3HHeJ_G0038079.1 mouse_genomes_project 1 136085567 136085700 + Gm23939 snoRNA snoRNA MGP_C3HHeJ_T0011975.1 MGP_C3HHeJ_G0010079.1 mouse_genomes_project 1 61938711 61938970 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101580.1 MGP_C3HHeJ_G0039546.1 mouse_genomes_project 1 119751008 119767987 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098594.1 MGP_C3HHeJ_G0036788.1 mouse_genomes_project 1 1595311 1595418 + Gm22307 snRNA snRNA MGP_C3HHeJ_T0022586.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160015186 160059202 - MGP_C3HHeJ_P0022586 Fam20b protein_coding protein_coding MGP_C3HHeJ_T0022587.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160015225 160059216 - MGP_C3HHeJ_P0022587 Fam20b protein_coding protein_coding MGP_C3HHeJ_T0022588.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160023549 160038959 - Fam20b protein_coding retained_intron MGP_C3HHeJ_T0022589.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160038804 160043914 - Fam20b protein_coding processed_transcript MGP_C3HHeJ_T0022590.1 MGP_C3HHeJ_G0016393.1 mouse_genomes_project 1 160041741 160057088 - Fam20b protein_coding retained_intron MGP_C3HHeJ_T0011752.1 MGP_C3HHeJ_G0009856.1 mouse_genomes_project 1 1601725 1602175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021935.1 MGP_C3HHeJ_G0016266.1 mouse_genomes_project 1 136588210 136592162 - MGP_C3HHeJ_P0021935 Btg2 protein_coding protein_coding MGP_C3HHeJ_T0000337.1 MGP_C3HHeJ_G0000287.1 mouse_genomes_project 1 5719235 5725251 - TEC TEC MGP_C3HHeJ_T0011996.1 MGP_C3HHeJ_G0010100.1 mouse_genomes_project 1 66946828 66948468 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098599.1 MGP_C3HHeJ_G0036793.1 mouse_genomes_project 1 7696789 7696896 - Gm25253 snRNA snRNA MGP_C3HHeJ_T0002783.1 MGP_C3HHeJ_G0002635.1 mouse_genomes_project 1 88074332 88075026 - Efhd1os antisense antisense MGP_C3HHeJ_T0012059.1 MGP_C3HHeJ_G0010163.1 mouse_genomes_project 1 101069991 101071837 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023100.1 MGP_C3HHeJ_G0016500.1 mouse_genomes_project 1 174783820 174790400 - MGP_C3HHeJ_P0023100 Fcrlb protein_coding protein_coding MGP_C3HHeJ_T0011878.1 MGP_C3HHeJ_G0009982.1 mouse_genomes_project 1 33145016 33147157 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005941.1 MGP_C3HHeJ_G0004968.1 mouse_genomes_project 1 187394861 187410205 + 1700047M11Rik lincRNA lincRNA MGP_C3HHeJ_T0005942.1 MGP_C3HHeJ_G0004968.1 mouse_genomes_project 1 187407713 187410167 + 1700047M11Rik lincRNA lincRNA MGP_C3HHeJ_T0022200.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141924856 142116640 - MGP_C3HHeJ_P0022200 Crb1 protein_coding protein_coding MGP_C3HHeJ_T0022201.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141926044 141930061 - Crb1 protein_coding retained_intron MGP_C3HHeJ_T0022202.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141957356 142116663 - MGP_C3HHeJ_P0022202 Crb1 protein_coding protein_coding MGP_C3HHeJ_T0022203.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141973315 141982947 - Crb1 protein_coding retained_intron MGP_C3HHeJ_T0022204.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141975360 142116604 - MGP_C3HHeJ_P0022204 Crb1 protein_coding protein_coding MGP_C3HHeJ_T0022205.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141976422 142065439 - MGP_C3HHeJ_P0022205 Crb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022206.1 MGP_C3HHeJ_G0016320.1 mouse_genomes_project 1 141976437 142065459 - MGP_C3HHeJ_P0022206 Crb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012049.1 MGP_C3HHeJ_G0010153.1 mouse_genomes_project 1 94480047 94480593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011797.1 MGP_C3HHeJ_G0009901.1 mouse_genomes_project 1 9296078 9296948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019598.1 MGP_C3HHeJ_G0015795.1 mouse_genomes_project 1 53851845 53888979 - MGP_C3HHeJ_P0019598 Gtf3c3 protein_coding protein_coding MGP_C3HHeJ_T0019599.1 MGP_C3HHeJ_G0015795.1 mouse_genomes_project 1 53869888 53873794 - Gtf3c3 protein_coding retained_intron MGP_C3HHeJ_T0019600.1 MGP_C3HHeJ_G0015795.1 mouse_genomes_project 1 53877043 53878651 - Gtf3c3 protein_coding retained_intron MGP_C3HHeJ_T0023975.1 MGP_C3HHeJ_G0016703.1 mouse_genomes_project 1 196697983 196711134 - MGP_C3HHeJ_P0023975 Nenf protein_coding protein_coding MGP_C3HHeJ_T0099901.1 MGP_C3HHeJ_G0038095.1 mouse_genomes_project 1 164589638 164589699 + Gm23212 snoRNA snoRNA MGP_C3HHeJ_T0000414.1 MGP_C3HHeJ_G0000361.1 mouse_genomes_project 1 34743130 34745290 + TEC TEC MGP_C3HHeJ_T0005798.1 MGP_C3HHeJ_G0004855.1 mouse_genomes_project 1 121060314 121061689 + Gm26831 lincRNA lincRNA MGP_C3HHeJ_T0011860.1 MGP_C3HHeJ_G0009964.1 mouse_genomes_project 1 29796338 29797171 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000642.1 MGP_C3HHeJ_G0000587.1 mouse_genomes_project 1 150342625 150343802 - TEC TEC MGP_C3HHeJ_T0011803.1 MGP_C3HHeJ_G0009907.1 mouse_genomes_project 1 13102253 13102800 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016797.1 MGP_C3HHeJ_G0014869.1 mouse_genomes_project 1 134381062 134435102 + Gm29103 processed_transcript processed_transcript MGP_C3HHeJ_T0097970.1 MGP_C3HHeJ_G0036182.1 mouse_genomes_project 1 157625659 157625779 - n-R5s220 rRNA rRNA MGP_C3HHeJ_T0005762.1 MGP_C3HHeJ_G0004825.1 mouse_genomes_project 1 92480167 92481318 - 1700020N18Rik lincRNA lincRNA MGP_C3HHeJ_T0000599.1 MGP_C3HHeJ_G0000546.1 mouse_genomes_project 1 134347629 134348136 - TEC TEC MGP_C3HHeJ_T0097974.1 MGP_C3HHeJ_G0036186.1 mouse_genomes_project 1 191303617 191303723 + Gm23821 rRNA rRNA MGP_C3HHeJ_T0002813.1 MGP_C3HHeJ_G0002658.1 mouse_genomes_project 1 133116951 133118117 - Gm28857 antisense antisense MGP_C3HHeJ_T0022045.1 MGP_C3HHeJ_G0016292.1 mouse_genomes_project 1 137950402 137954537 - MGP_C3HHeJ_P0022045 Shisa4 protein_coding protein_coding MGP_C3HHeJ_T0022046.1 MGP_C3HHeJ_G0016292.1 mouse_genomes_project 1 137950405 137952799 - Shisa4 protein_coding retained_intron MGP_C3HHeJ_T0022047.1 MGP_C3HHeJ_G0016292.1 mouse_genomes_project 1 137953187 137954377 - Shisa4 protein_coding retained_intron MGP_C3HHeJ_T0021350.1 MGP_C3HHeJ_G0016135.1 mouse_genomes_project 1 107433344 107499868 + MGP_C3HHeJ_P0021350 Tnfrsf11a protein_coding protein_coding MGP_C3HHeJ_T0021351.1 MGP_C3HHeJ_G0016135.1 mouse_genomes_project 1 107433376 107468315 + Tnfrsf11a protein_coding retained_intron MGP_C3HHeJ_T0021352.1 MGP_C3HHeJ_G0016135.1 mouse_genomes_project 1 107473765 107480642 + Tnfrsf11a protein_coding retained_intron MGP_C3HHeJ_T0002861.1 MGP_C3HHeJ_G0002696.1 mouse_genomes_project 1 164715487 164720249 - 4930469G21Rik antisense antisense MGP_C3HHeJ_T0002862.1 MGP_C3HHeJ_G0002696.1 mouse_genomes_project 1 164717772 164720249 - 4930469G21Rik antisense antisense MGP_C3HHeJ_T0021469.1 MGP_C3HHeJ_G0016164.1 mouse_genomes_project 1 121493320 121527649 - MGP_C3HHeJ_P0021469 Ralb protein_coding protein_coding MGP_C3HHeJ_T0021470.1 MGP_C3HHeJ_G0016164.1 mouse_genomes_project 1 121495159 121501080 - MGP_C3HHeJ_P0021470 Ralb protein_coding protein_coding MGP_C3HHeJ_T0021471.1 MGP_C3HHeJ_G0016164.1 mouse_genomes_project 1 121504133 121527649 - Ralb protein_coding retained_intron MGP_C3HHeJ_T0000726.1 MGP_C3HHeJ_G0000671.1 mouse_genomes_project 1 181808805 181811570 - TEC TEC MGP_C3HHeJ_T0019636.1 MGP_C3HHeJ_G0015801.1 mouse_genomes_project 1 54575352 54578528 + MGP_C3HHeJ_P0019636 Hspe1 protein_coding protein_coding MGP_C3HHeJ_T0019637.1 MGP_C3HHeJ_G0015801.1 mouse_genomes_project 1 54575534 54577136 + Hspe1 protein_coding retained_intron MGP_C3HHeJ_T0021046.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369578 92394335 + MGP_C3HHeJ_P0021046 Scly protein_coding protein_coding MGP_C3HHeJ_T0021047.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369600 92374777 + Scly protein_coding retained_intron MGP_C3HHeJ_T0021048.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369608 92381542 + MGP_C3HHeJ_P0021048 Scly protein_coding protein_coding MGP_C3HHeJ_T0021049.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369609 92382650 + MGP_C3HHeJ_P0021049 Scly protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021050.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369610 92384129 + Scly protein_coding retained_intron MGP_C3HHeJ_T0021051.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369644 92381508 + MGP_C3HHeJ_P0021051 Scly protein_coding protein_coding MGP_C3HHeJ_T0021052.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369647 92381614 + MGP_C3HHeJ_P0021052 Scly protein_coding protein_coding MGP_C3HHeJ_T0021053.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92369667 92376702 + Scly protein_coding processed_transcript MGP_C3HHeJ_T0021054.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92371196 92374135 + MGP_C3HHeJ_P0021054 Scly protein_coding protein_coding MGP_C3HHeJ_T0021055.1 MGP_C3HHeJ_G0016070.1 mouse_genomes_project 1 92374062 92382671 + MGP_C3HHeJ_P0021055 Scly protein_coding protein_coding MGP_C3HHeJ_T0000478.1 MGP_C3HHeJ_G0000425.1 mouse_genomes_project 1 68689820 68691884 - TEC TEC MGP_C3HHeJ_T0000516.1 MGP_C3HHeJ_G0000463.1 mouse_genomes_project 1 86815138 86818099 + TEC TEC MGP_C3HHeJ_T0000644.1 MGP_C3HHeJ_G0000589.1 mouse_genomes_project 1 152507619 152509075 - TEC TEC MGP_C3HHeJ_T0019994.1 MGP_C3HHeJ_G0015863.1 mouse_genomes_project 1 63678247 63692483 - MGP_C3HHeJ_P0019994 4933402D24Rik protein_coding protein_coding MGP_C3HHeJ_T0021966.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136928946 136931326 + Cyb5r1 protein_coding processed_transcript MGP_C3HHeJ_T0021967.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929116 136935074 + MGP_C3HHeJ_P0021967 Cyb5r1 protein_coding protein_coding MGP_C3HHeJ_T0021968.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929116 136935070 + MGP_C3HHeJ_P0021968 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021969.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929330 136930938 + Cyb5r1 protein_coding processed_transcript MGP_C3HHeJ_T0021970.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929338 136930930 + Cyb5r1 protein_coding processed_transcript MGP_C3HHeJ_T0021971.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929339 136933001 + MGP_C3HHeJ_P0021971 Cyb5r1 protein_coding protein_coding MGP_C3HHeJ_T0021972.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929355 136932202 + Cyb5r1 protein_coding retained_intron MGP_C3HHeJ_T0021973.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929363 136933335 + Cyb5r1 protein_coding retained_intron MGP_C3HHeJ_T0021974.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929648 136934305 + MGP_C3HHeJ_P0021974 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021975.1 MGP_C3HHeJ_G0016275.1 mouse_genomes_project 1 136929648 136931003 + MGP_C3HHeJ_P0021975 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016743.1 MGP_C3HHeJ_G0014847.1 mouse_genomes_project 1 1560929 1563757 + Gm37587 processed_transcript retained_intron MGP_C3HHeJ_T0016744.1 MGP_C3HHeJ_G0014847.1 mouse_genomes_project 1 1561852 1563939 + Gm37587 processed_transcript antisense MGP_C3HHeJ_T0019829.1 MGP_C3HHeJ_G0015836.1 mouse_genomes_project 1 59237958 59242490 + MGP_C3HHeJ_P0019829 Fzd7 protein_coding protein_coding MGP_C3HHeJ_T0005753.1 MGP_C3HHeJ_G0004816.1 mouse_genomes_project 1 90290366 90348370 - Gm28342 lincRNA lincRNA MGP_C3HHeJ_T0022363.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154742710 154826265 + MGP_C3HHeJ_P0022363 Fam129a protein_coding protein_coding MGP_C3HHeJ_T0022364.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154742897 154905152 + MGP_C3HHeJ_P0022364 Fam129a protein_coding protein_coding MGP_C3HHeJ_T0022365.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154742976 154902555 + MGP_C3HHeJ_P0022365 Fam129a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022366.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154743020 154872378 + MGP_C3HHeJ_P0022366 Fam129a protein_coding protein_coding MGP_C3HHeJ_T0022367.1 MGP_C3HHeJ_G0016350.1 mouse_genomes_project 1 154858802 154902555 + Fam129a protein_coding processed_transcript MGP_C3HHeJ_T0098566.1 MGP_C3HHeJ_G0036765.1 mouse_genomes_project 1 41298588 41348778 + Gm20646 sense_overlapping sense_overlapping MGP_C3HHeJ_T0098567.1 MGP_C3HHeJ_G0036765.1 mouse_genomes_project 1 41298588 41352601 + Gm20646 sense_overlapping sense_overlapping MGP_C3HHeJ_T0022368.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154939954 155002677 + MGP_C3HHeJ_P0022368 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0022369.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154939957 155005793 + MGP_C3HHeJ_P0022369 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0022370.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154940043 155002721 + MGP_C3HHeJ_P0022370 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0022371.1 MGP_C3HHeJ_G0016351.1 mouse_genomes_project 1 154940043 155002721 + MGP_C3HHeJ_P0022371 Edem3 protein_coding protein_coding MGP_C3HHeJ_T0011895.1 MGP_C3HHeJ_G0009999.1 mouse_genomes_project 1 42545421 42545966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000382.1 MGP_C3HHeJ_G0000330.1 mouse_genomes_project 1 23303452 23306394 - TEC TEC MGP_C3HHeJ_T0018832.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18362628 18410200 + MGP_C3HHeJ_P0018832 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0018833.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18389790 18409603 + MGP_C3HHeJ_P0018833 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0018834.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18389824 18406300 + MGP_C3HHeJ_P0018834 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0018835.1 MGP_C3HHeJ_G0015644.1 mouse_genomes_project 1 18393606 18406307 + MGP_C3HHeJ_P0018835 Paqr8 protein_coding protein_coding MGP_C3HHeJ_T0022579.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159988867 160011313 - MGP_C3HHeJ_P0022579 Tor3a protein_coding protein_coding MGP_C3HHeJ_T0022580.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159988867 160011313 - MGP_C3HHeJ_P0022580 Tor3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022581.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159988867 160011282 - MGP_C3HHeJ_P0022581 Tor3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022582.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159990291 160011271 - MGP_C3HHeJ_P0022582 Tor3a protein_coding protein_coding MGP_C3HHeJ_T0022583.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159990920 159993661 - Tor3a protein_coding processed_transcript MGP_C3HHeJ_T0022584.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 159997373 160003714 - Tor3a protein_coding processed_transcript MGP_C3HHeJ_T0022585.1 MGP_C3HHeJ_G0016392.1 mouse_genomes_project 1 160003675 160011292 - MGP_C3HHeJ_P0022585 Tor3a protein_coding protein_coding MGP_C3HHeJ_T0019254.1 MGP_C3HHeJ_G0015724.1 mouse_genomes_project 1 37336424 37347532 + MGP_C3HHeJ_P0019254 Nms protein_coding protein_coding MGP_C3HHeJ_T0019255.1 MGP_C3HHeJ_G0015724.1 mouse_genomes_project 1 37336478 37345899 + MGP_C3HHeJ_P0019255 Nms protein_coding protein_coding MGP_C3HHeJ_T0020744.1 MGP_C3HHeJ_G0016002.1 mouse_genomes_project 1 86583460 86597886 + MGP_C3HHeJ_P0020744 Itm2c protein_coding protein_coding MGP_C3HHeJ_T0020745.1 MGP_C3HHeJ_G0016002.1 mouse_genomes_project 1 86583798 86597900 + MGP_C3HHeJ_P0020745 Itm2c protein_coding protein_coding MGP_C3HHeJ_T0020746.1 MGP_C3HHeJ_G0016002.1 mouse_genomes_project 1 86595371 86597002 + Itm2c protein_coding retained_intron MGP_C3HHeJ_T0098671.1 MGP_C3HHeJ_G0036865.1 mouse_genomes_project 1 176023052 176023107 - Gm26412 snRNA snRNA MGP_C3HHeJ_T0022031.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137838193 137859389 - MGP_C3HHeJ_P0022031 Rnpep protein_coding protein_coding MGP_C3HHeJ_T0022032.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137838193 137859389 - MGP_C3HHeJ_P0022032 Rnpep protein_coding protein_coding MGP_C3HHeJ_T0022033.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137840686 137842897 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022034.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137842523 137846947 - Rnpep protein_coding processed_transcript MGP_C3HHeJ_T0022035.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137846858 137850056 - Rnpep protein_coding processed_transcript MGP_C3HHeJ_T0022036.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137846860 137848242 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022037.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137851160 137852726 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022038.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137852656 137854423 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0022039.1 MGP_C3HHeJ_G0016289.1 mouse_genomes_project 1 137852952 137855226 - Rnpep protein_coding retained_intron MGP_C3HHeJ_T0012213.1 MGP_C3HHeJ_G0010317.1 mouse_genomes_project 1 167655489 167655878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023557.1 MGP_C3HHeJ_G0016621.1 mouse_genomes_project 1 184459757 184478992 - MGP_C3HHeJ_P0023557 protein_coding protein_coding MGP_C3HHeJ_T0023573.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184689631 184749320 - MGP_C3HHeJ_P0023573 Ahctf1 protein_coding protein_coding MGP_C3HHeJ_T0023574.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184690074 184697147 - MGP_C3HHeJ_P0023574 Ahctf1 protein_coding protein_coding MGP_C3HHeJ_T0023575.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184690828 184698318 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0023576.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184698436 184702727 - MGP_C3HHeJ_P0023576 Ahctf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023577.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184705000 184710645 - MGP_C3HHeJ_P0023577 Ahctf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023578.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184713032 184715656 - MGP_C3HHeJ_P0023578 Ahctf1 protein_coding protein_coding MGP_C3HHeJ_T0023579.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184738568 184741724 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0023580.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184744426 184747712 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0023581.1 MGP_C3HHeJ_G0016625.1 mouse_genomes_project 1 184744432 184749246 - Ahctf1 protein_coding retained_intron MGP_C3HHeJ_T0002839.1 MGP_C3HHeJ_G0002678.1 mouse_genomes_project 1 149399530 149473657 - Gm29514 antisense antisense MGP_C3HHeJ_T0002840.1 MGP_C3HHeJ_G0002678.1 mouse_genomes_project 1 149406902 149473766 - Gm29514 antisense antisense MGP_C3HHeJ_T0011160.1 MGP_C3HHeJ_G0009293.1 mouse_genomes_project 1 106087281 106087611 + Gm23537 misc_RNA misc_RNA MGP_C3HHeJ_T0020599.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80139136 80197828 - MGP_C3HHeJ_P0020599 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020600.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80142234 80197797 - MGP_C3HHeJ_P0020600 Wdfy1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020601.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80154935 80213401 - MGP_C3HHeJ_P0020601 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020602.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80157183 80197828 - MGP_C3HHeJ_P0020602 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020603.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80157196 80197828 - MGP_C3HHeJ_P0020603 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0020604.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80157385 80161951 - Wdfy1 protein_coding processed_transcript MGP_C3HHeJ_T0020605.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80170048 80197780 - Wdfy1 protein_coding retained_intron MGP_C3HHeJ_T0020606.1 MGP_C3HHeJ_G0015974.1 mouse_genomes_project 1 80170281 80198100 - MGP_C3HHeJ_P0020606 Wdfy1 protein_coding protein_coding MGP_C3HHeJ_T0019337.1 MGP_C3HHeJ_G0015745.1 mouse_genomes_project 1 41300441 41308493 + MGP_C3HHeJ_P0019337 Pou3f3 protein_coding protein_coding MGP_C3HHeJ_T0000710.1 MGP_C3HHeJ_G0000655.1 mouse_genomes_project 1 175968055 175969761 + TEC TEC MGP_C3HHeJ_T0011973.1 MGP_C3HHeJ_G0010077.1 mouse_genomes_project 1 61378998 61379388 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097831.1 MGP_C3HHeJ_G0036043.1 mouse_genomes_project 1 32938156 32939105 + pseudogene pseudogene MGP_C3HHeJ_T0020925.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88799326 88831530 - MGP_C3HHeJ_P0020925 Usp40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020926.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88799328 88869529 - MGP_C3HHeJ_P0020926 Usp40 protein_coding protein_coding MGP_C3HHeJ_T0020927.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88800650 88869512 - MGP_C3HHeJ_P0020927 Usp40 protein_coding protein_coding MGP_C3HHeJ_T0020928.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88800650 88869512 - MGP_C3HHeJ_P0020928 Usp40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020929.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88803906 88805881 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020930.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88821049 88823224 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020931.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88841837 88869506 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020932.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88866871 88869528 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020933.1 MGP_C3HHeJ_G0016038.1 mouse_genomes_project 1 88866871 88869207 - Usp40 protein_coding retained_intron MGP_C3HHeJ_T0020034.1 MGP_C3HHeJ_G0015874.1 mouse_genomes_project 1 65032604 65034978 - Cryga protein_coding retained_intron MGP_C3HHeJ_T0020035.1 MGP_C3HHeJ_G0015874.1 mouse_genomes_project 1 65032604 65034991 - MGP_C3HHeJ_P0020035 Cryga protein_coding protein_coding MGP_C3HHeJ_T0023431.1 MGP_C3HHeJ_G0016589.1 mouse_genomes_project 1 178762253 178833701 + MGP_C3HHeJ_P0023431 Spta1 protein_coding protein_coding MGP_C3HHeJ_T0023432.1 MGP_C3HHeJ_G0016589.1 mouse_genomes_project 1 178804590 178832809 + Spta1 protein_coding retained_intron MGP_C3HHeJ_T0000774.1 MGP_C3HHeJ_G0000716.1 mouse_genomes_project 1 200163240 200165066 + TEC TEC MGP_C3HHeJ_T0012190.1 MGP_C3HHeJ_G0010294.1 mouse_genomes_project 1 156875910 156877009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000352.1 MGP_C3HHeJ_G0000302.1 mouse_genomes_project 1 10583875 10588448 - TEC TEC MGP_C3HHeJ_T0012171.1 MGP_C3HHeJ_G0010275.1 mouse_genomes_project 1 151086297 151086768 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019338.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460365 41518040 + MGP_C3HHeJ_P0019338 Mrps9 protein_coding protein_coding MGP_C3HHeJ_T0019339.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460367 41512030 + Mrps9 protein_coding processed_transcript MGP_C3HHeJ_T0019340.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460367 41514364 + Mrps9 protein_coding processed_transcript MGP_C3HHeJ_T0019341.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41460376 41493232 + Mrps9 protein_coding retained_intron MGP_C3HHeJ_T0019342.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41472910 41511479 + Mrps9 protein_coding retained_intron MGP_C3HHeJ_T0019343.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41500087 41518034 + MGP_C3HHeJ_P0019343 Mrps9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019344.1 MGP_C3HHeJ_G0015746.1 mouse_genomes_project 1 41515407 41518034 + Mrps9 protein_coding retained_intron MGP_C3HHeJ_T0000330.1 MGP_C3HHeJ_G0000280.1 mouse_genomes_project 1 1983774 1984886 - TEC TEC MGP_C3HHeJ_T0002705.1 MGP_C3HHeJ_G0002576.1 mouse_genomes_project 1 18736686 18758124 - Gm28836 antisense antisense MGP_C3HHeJ_T0012129.1 MGP_C3HHeJ_G0010233.1 mouse_genomes_project 1 125925360 125926553 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019018.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 32892463 33031148 + MGP_C3HHeJ_P0019018 protein_coding protein_coding MGP_C3HHeJ_T0019019.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 32947175 33030238 + MGP_C3HHeJ_P0019019 protein_coding protein_coding MGP_C3HHeJ_T0019020.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 32965971 33025553 + MGP_C3HHeJ_P0019020 protein_coding protein_coding MGP_C3HHeJ_T0019021.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020173 33031724 + MGP_C3HHeJ_P0019021 protein_coding protein_coding MGP_C3HHeJ_T0019022.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020190 33027627 + protein_coding retained_intron MGP_C3HHeJ_T0019023.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020191 33025107 + protein_coding retained_intron MGP_C3HHeJ_T0019024.1 MGP_C3HHeJ_G0015685.1 mouse_genomes_project 1 33020210 33027320 + MGP_C3HHeJ_P0019024 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012226.1 MGP_C3HHeJ_G0010330.1 mouse_genomes_project 1 173381645 173382229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016822.1 MGP_C3HHeJ_G0014877.1 mouse_genomes_project 1 153186906 153215661 - Ptgs2os processed_transcript antisense MGP_C3HHeJ_T0016823.1 MGP_C3HHeJ_G0014877.1 mouse_genomes_project 1 153214024 153215807 - Ptgs2os processed_transcript retained_intron MGP_C3HHeJ_T0023033.1 MGP_C3HHeJ_G0016481.1 mouse_genomes_project 1 171370729 171416500 + MGP_C3HHeJ_P0023033 Rxrg protein_coding protein_coding MGP_C3HHeJ_T0022883.1 MGP_C3HHeJ_G0016448.1 mouse_genomes_project 1 167916306 167928573 + MGP_C3HHeJ_P0022883 Ccdc181 protein_coding protein_coding MGP_C3HHeJ_T0011972.1 MGP_C3HHeJ_G0010076.1 mouse_genomes_project 1 61033826 61034528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021812.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134859618 134913587 + MGP_C3HHeJ_P0021812 Dstyk protein_coding protein_coding MGP_C3HHeJ_T0021813.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134859667 134910724 + MGP_C3HHeJ_P0021813 Dstyk protein_coding protein_coding MGP_C3HHeJ_T0021814.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134860440 134876069 + Dstyk protein_coding processed_transcript MGP_C3HHeJ_T0021815.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134893346 134895558 + MGP_C3HHeJ_P0021815 Dstyk protein_coding protein_coding MGP_C3HHeJ_T0021816.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134898532 134904301 + Dstyk protein_coding retained_intron MGP_C3HHeJ_T0021817.1 MGP_C3HHeJ_G0016241.1 mouse_genomes_project 1 134909040 134909988 + Dstyk protein_coding retained_intron MGP_C3HHeJ_T0019197.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36233321 36248905 - MGP_C3HHeJ_P0019197 Mitd1 protein_coding protein_coding MGP_C3HHeJ_T0019198.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36237407 36248909 - MGP_C3HHeJ_P0019198 Mitd1 protein_coding protein_coding MGP_C3HHeJ_T0019199.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36237409 36238638 - Mitd1 protein_coding processed_transcript MGP_C3HHeJ_T0019200.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36237507 36240382 - Mitd1 protein_coding processed_transcript MGP_C3HHeJ_T0019201.1 MGP_C3HHeJ_G0015714.1 mouse_genomes_project 1 36240442 36248774 - Mitd1 protein_coding retained_intron MGP_C3HHeJ_T0012223.1 MGP_C3HHeJ_G0010327.1 mouse_genomes_project 1 170935866 170936275 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012180.1 MGP_C3HHeJ_G0010284.1 mouse_genomes_project 1 153263851 153264453 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021846.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135417742 135485376 - MGP_C3HHeJ_P0021846 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021847.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135419911 135430690 - Mdm4 protein_coding processed_transcript MGP_C3HHeJ_T0021848.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135449134 135485386 - MGP_C3HHeJ_P0021848 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021849.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135449691 135485395 - MGP_C3HHeJ_P0021849 Mdm4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021850.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135450516 135485392 - MGP_C3HHeJ_P0021850 Mdm4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021851.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135450643 135485394 - MGP_C3HHeJ_P0021851 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021852.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135455930 135478889 - Mdm4 protein_coding processed_transcript MGP_C3HHeJ_T0021853.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135455933 135463765 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021854.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135458768 135460718 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021855.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135460466 135463568 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021856.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135468523 135485368 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0021857.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135468577 135490738 - MGP_C3HHeJ_P0021857 Mdm4 protein_coding protein_coding MGP_C3HHeJ_T0021858.1 MGP_C3HHeJ_G0016247.1 mouse_genomes_project 1 135477731 135485376 - Mdm4 protein_coding retained_intron MGP_C3HHeJ_T0019605.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54112668 54115942 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019606.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54112668 54399583 - MGP_C3HHeJ_P0019606 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019607.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54112670 54399583 - MGP_C3HHeJ_P0019607 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019608.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54116425 54124847 - MGP_C3HHeJ_P0019608 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019609.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54118997 54234809 - MGP_C3HHeJ_P0019609 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0019610.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54122239 54159627 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019611.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54134787 54191743 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019612.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54191234 54193090 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019613.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54200099 54206738 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019614.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54206395 54399550 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019615.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54214392 54237504 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019616.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54231658 54239872 - Ankrd44 protein_coding processed_transcript MGP_C3HHeJ_T0019617.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54231976 54399583 - Ankrd44 protein_coding retained_intron MGP_C3HHeJ_T0019618.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54233457 54291194 - Ankrd44 protein_coding processed_transcript MGP_C3HHeJ_T0019619.1 MGP_C3HHeJ_G0015797.1 mouse_genomes_project 1 54237872 54363185 - MGP_C3HHeJ_P0019619 Ankrd44 protein_coding protein_coding MGP_C3HHeJ_T0000457.1 MGP_C3HHeJ_G0000404.1 mouse_genomes_project 1 60591544 60593596 + TEC TEC MGP_C3HHeJ_T0012156.1 MGP_C3HHeJ_G0010260.1 mouse_genomes_project 1 141862022 141862797 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021416.1 MGP_C3HHeJ_G0016156.1 mouse_genomes_project 1 118785340 118809067 + MGP_C3HHeJ_P0021416 Gm19965 protein_coding protein_coding MGP_C3HHeJ_T0019360.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42082795 42173770 + MGP_C3HHeJ_P0019360 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0019361.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42083967 42100908 + Nck2 protein_coding processed_transcript MGP_C3HHeJ_T0019362.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42083967 42212398 + MGP_C3HHeJ_P0019362 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0019363.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42095330 42100936 + Nck2 protein_coding processed_transcript MGP_C3HHeJ_T0019364.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42172542 42194766 + MGP_C3HHeJ_P0019364 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0019365.1 MGP_C3HHeJ_G0015751.1 mouse_genomes_project 1 42173706 42210036 + MGP_C3HHeJ_P0019365 Nck2 protein_coding protein_coding MGP_C3HHeJ_T0000470.1 MGP_C3HHeJ_G0000417.1 mouse_genomes_project 1 66755300 66758403 - TEC TEC MGP_C3HHeJ_T0011989.1 MGP_C3HHeJ_G0010093.1 mouse_genomes_project 1 65406100 65406408 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019713.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815028 57878883 + MGP_C3HHeJ_P0019713 Aox4 protein_coding protein_coding MGP_C3HHeJ_T0019714.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815063 57870690 + Aox4 protein_coding processed_transcript MGP_C3HHeJ_T0019715.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815082 57820042 + Aox4 protein_coding processed_transcript MGP_C3HHeJ_T0019716.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57815849 57817994 + Aox4 protein_coding retained_intron MGP_C3HHeJ_T0019717.1 MGP_C3HHeJ_G0015817.1 mouse_genomes_project 1 57847449 57851993 + Aox4 protein_coding retained_intron MGP_C3HHeJ_T0002887.1 MGP_C3HHeJ_G0002714.1 mouse_genomes_project 1 175912745 175913896 + Gm37787 antisense antisense MGP_C3HHeJ_T0019098.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824773 34834477 - MGP_C3HHeJ_P0019098 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019099.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824776 34834477 - MGP_C3HHeJ_P0019099 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019100.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824776 34833654 - MGP_C3HHeJ_P0019100 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019101.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34824776 34833685 - MGP_C3HHeJ_P0019101 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019102.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34827857 34829026 - Sema4c protein_coding retained_intron MGP_C3HHeJ_T0019103.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34829355 34830358 - Sema4c protein_coding retained_intron MGP_C3HHeJ_T0019104.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34830527 34833662 - MGP_C3HHeJ_P0019104 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0019105.1 MGP_C3HHeJ_G0015699.1 mouse_genomes_project 1 34832059 34834378 - MGP_C3HHeJ_P0019105 Sema4c protein_coding protein_coding MGP_C3HHeJ_T0021358.1 MGP_C3HHeJ_G0016137.1 mouse_genomes_project 1 107840816 108066705 + MGP_C3HHeJ_P0021358 Phlpp1 protein_coding protein_coding MGP_C3HHeJ_T0021359.1 MGP_C3HHeJ_G0016137.1 mouse_genomes_project 1 107952605 107958604 + Phlpp1 protein_coding retained_intron MGP_C3HHeJ_T0021360.1 MGP_C3HHeJ_G0016137.1 mouse_genomes_project 1 107982155 107984781 + Phlpp1 protein_coding processed_transcript MGP_C3HHeJ_T0022229.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143121436 143501863 + MGP_C3HHeJ_P0022229 Kcnt2 protein_coding protein_coding MGP_C3HHeJ_T0022230.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143121473 143499574 + MGP_C3HHeJ_P0022230 Kcnt2 protein_coding protein_coding MGP_C3HHeJ_T0022231.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143121485 143499871 + MGP_C3HHeJ_P0022231 Kcnt2 protein_coding protein_coding MGP_C3HHeJ_T0022232.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143330357 143331365 + Kcnt2 protein_coding retained_intron MGP_C3HHeJ_T0022233.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143330522 143412849 + Kcnt2 protein_coding processed_transcript MGP_C3HHeJ_T0022234.1 MGP_C3HHeJ_G0016327.1 mouse_genomes_project 1 143406308 143464868 + MGP_C3HHeJ_P0022234 Kcnt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023849.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191830996 191921378 - MGP_C3HHeJ_P0023849 Tgfb2 protein_coding protein_coding MGP_C3HHeJ_T0023850.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191832423 191921089 - MGP_C3HHeJ_P0023850 Tgfb2 protein_coding protein_coding MGP_C3HHeJ_T0023851.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191833784 191862632 - Tgfb2 protein_coding retained_intron MGP_C3HHeJ_T0023852.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191840737 191862698 - Tgfb2 protein_coding retained_intron MGP_C3HHeJ_T0023853.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191844612 191881579 - Tgfb2 protein_coding processed_transcript MGP_C3HHeJ_T0023854.1 MGP_C3HHeJ_G0016680.1 mouse_genomes_project 1 191905778 191919722 - Tgfb2 protein_coding processed_transcript MGP_C3HHeJ_T0002849.1 MGP_C3HHeJ_G0002684.1 mouse_genomes_project 1 156952565 156954811 - Gm29529 antisense antisense MGP_C3HHeJ_T0098682.1 MGP_C3HHeJ_G0036876.1 mouse_genomes_project 1 194019437 194019541 + Gm25269 snRNA snRNA MGP_C3HHeJ_T0002911.1 MGP_C3HHeJ_G0002735.1 mouse_genomes_project 1 191921083 191922442 + Gm29491 antisense antisense MGP_C3HHeJ_T0021084.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619776 92635341 + MGP_C3HHeJ_P0021084 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021085.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619799 92626188 + Asb1 protein_coding processed_transcript MGP_C3HHeJ_T0021086.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619946 92638842 + MGP_C3HHeJ_P0021086 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021087.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619964 92634077 + MGP_C3HHeJ_P0021087 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021088.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92619964 92634077 + MGP_C3HHeJ_P0021088 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021089.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92620312 92632016 + MGP_C3HHeJ_P0021089 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0021090.1 MGP_C3HHeJ_G0016078.1 mouse_genomes_project 1 92620312 92634370 + MGP_C3HHeJ_P0021090 Asb1 protein_coding protein_coding MGP_C3HHeJ_T0023538.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183198911 183212366 - MGP_C3HHeJ_P0023538 Hnrnpu protein_coding protein_coding MGP_C3HHeJ_T0023539.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183199400 183204889 - Hnrnpu protein_coding retained_intron MGP_C3HHeJ_T0023540.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183206434 183207495 - Hnrnpu protein_coding retained_intron MGP_C3HHeJ_T0023541.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183206671 183209115 - Hnrnpu protein_coding processed_transcript MGP_C3HHeJ_T0023542.1 MGP_C3HHeJ_G0016616.1 mouse_genomes_project 1 183210210 183210974 - Hnrnpu protein_coding retained_intron MGP_C3HHeJ_T0023092.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174746333 174760556 - MGP_C3HHeJ_P0023092 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023093.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747019 174760639 - MGP_C3HHeJ_P0023093 Dusp12 protein_coding protein_coding MGP_C3HHeJ_T0023094.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747019 174760298 - MGP_C3HHeJ_P0023094 Dusp12 protein_coding protein_coding MGP_C3HHeJ_T0023095.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747019 174760494 - MGP_C3HHeJ_P0023095 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023096.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747020 174760506 - MGP_C3HHeJ_P0023096 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023097.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174747351 174760495 - MGP_C3HHeJ_P0023097 Dusp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023098.1 MGP_C3HHeJ_G0016498.1 mouse_genomes_project 1 174753329 174760103 - MGP_C3HHeJ_P0023098 Dusp12 protein_coding protein_coding MGP_C3HHeJ_T0024060.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198581304 198591091 + MGP_C3HHeJ_P0024060 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024062.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586726 198589557 + MGP_C3HHeJ_P0024062 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024063.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586750 198588090 + MGP_C3HHeJ_P0024063 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024064.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586835 198591091 + MGP_C3HHeJ_P0024064 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024065.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586838 198589559 + MGP_C3HHeJ_P0024065 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024066.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586838 198587685 + MGP_C3HHeJ_P0024066 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024067.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198586844 198587811 + MGP_C3HHeJ_P0024067 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0024068.1 MGP_C3HHeJ_G0016720.1 mouse_genomes_project 1 198587002 198587854 + MGP_C3HHeJ_P0024068 A130010J15Rik protein_coding protein_coding MGP_C3HHeJ_T0005976.1 MGP_C3HHeJ_G0004994.1 mouse_genomes_project 1 195770069 195796637 - Gm30725 lincRNA lincRNA MGP_C3HHeJ_T0005665.1 MGP_C3HHeJ_G0004749.1 mouse_genomes_project 1 56943957 56962280 - 4930558J18Rik lincRNA lincRNA MGP_C3HHeJ_T0021886.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135843029 135859850 + MGP_C3HHeJ_P0021886 Etnk2 protein_coding protein_coding MGP_C3HHeJ_T0021887.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135843033 135854508 + Etnk2 protein_coding retained_intron MGP_C3HHeJ_T0021888.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135843305 135858903 + MGP_C3HHeJ_P0021888 Etnk2 protein_coding protein_coding MGP_C3HHeJ_T0021889.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135845221 135848592 + Etnk2 protein_coding retained_intron MGP_C3HHeJ_T0021890.1 MGP_C3HHeJ_G0016255.1 mouse_genomes_project 1 135846744 135856493 + Etnk2 protein_coding processed_transcript MGP_C3HHeJ_T0000340.1 MGP_C3HHeJ_G0000290.1 mouse_genomes_project 1 7096931 7098301 + TEC TEC MGP_C3HHeJ_T0022179.1 MGP_C3HHeJ_G0016316.1 mouse_genomes_project 1 141207169 141288360 - MGP_C3HHeJ_P0022179 Nek7 protein_coding protein_coding MGP_C3HHeJ_T0022180.1 MGP_C3HHeJ_G0016316.1 mouse_genomes_project 1 141238817 141346716 - Nek7 protein_coding retained_intron MGP_C3HHeJ_T0005973.1 MGP_C3HHeJ_G0004991.1 mouse_genomes_project 1 192662941 192677819 + Gm37896 lincRNA lincRNA MGP_C3HHeJ_T0099904.1 MGP_C3HHeJ_G0038098.1 mouse_genomes_project 1 164590554 164590635 + Snord80 snoRNA snoRNA MGP_C3HHeJ_T0019998.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449434 64524146 + MGP_C3HHeJ_P0019998 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0019999.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449468 64478332 + Creb1 protein_coding retained_intron MGP_C3HHeJ_T0020000.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449473 64498510 + MGP_C3HHeJ_P0020000 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0020001.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449473 64523067 + MGP_C3HHeJ_P0020001 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0020002.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449496 64494327 + Creb1 protein_coding processed_transcript MGP_C3HHeJ_T0020003.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449523 64519278 + MGP_C3HHeJ_P0020003 Creb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020004.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64449558 64519288 + MGP_C3HHeJ_P0020004 Creb1 protein_coding protein_coding MGP_C3HHeJ_T0020005.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64479937 64481579 + Creb1 protein_coding retained_intron MGP_C3HHeJ_T0020006.1 MGP_C3HHeJ_G0015865.1 mouse_genomes_project 1 64495601 64499443 + Creb1 protein_coding retained_intron MGP_C3HHeJ_T0000747.1 MGP_C3HHeJ_G0000690.1 mouse_genomes_project 1 187811002 187812956 + TEC TEC MGP_C3HHeJ_T0019578.1 MGP_C3HHeJ_G0015790.1 mouse_genomes_project 1 52581556 52610372 - MGP_C3HHeJ_P0019578 Gm28551 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098664.1 MGP_C3HHeJ_G0036858.1 mouse_genomes_project 1 167010533 167010641 + Gm24940 snRNA snRNA MGP_C3HHeJ_T0002902.1 MGP_C3HHeJ_G0002728.1 mouse_genomes_project 1 185810072 185813156 + H3f3aos antisense antisense MGP_C3HHeJ_T0002903.1 MGP_C3HHeJ_G0002728.1 mouse_genomes_project 1 185810080 185812985 + H3f3aos antisense antisense MGP_C3HHeJ_T0005782.1 MGP_C3HHeJ_G0004842.1 mouse_genomes_project 1 102650944 102666493 + Gm20268 lincRNA lincRNA MGP_C3HHeJ_T0002878.1 MGP_C3HHeJ_G0002708.1 mouse_genomes_project 1 170988457 170997477 + Gm37982 antisense antisense MGP_C3HHeJ_T0012054.1 MGP_C3HHeJ_G0010158.1 mouse_genomes_project 1 97951711 97952462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019464.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50105828 50118854 + Tmeff2 protein_coding processed_transcript MGP_C3HHeJ_T0019465.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50105828 50120372 + Tmeff2 protein_coding processed_transcript MGP_C3HHeJ_T0019466.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50114903 50186450 + MGP_C3HHeJ_P0019466 Tmeff2 protein_coding protein_coding MGP_C3HHeJ_T0019467.1 MGP_C3HHeJ_G0015772.1 mouse_genomes_project 1 50133395 50406028 + MGP_C3HHeJ_P0019467 Tmeff2 protein_coding protein_coding MGP_C3HHeJ_T0019322.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 38984418 39019544 + MGP_C3HHeJ_P0019322 Il18rap protein_coding protein_coding MGP_C3HHeJ_T0019323.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 38984461 39007533 + Il18rap protein_coding retained_intron MGP_C3HHeJ_T0019324.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 38984504 38994941 + Il18rap protein_coding retained_intron MGP_C3HHeJ_T0019325.1 MGP_C3HHeJ_G0015740.1 mouse_genomes_project 1 39009740 39015742 + Il18rap protein_coding retained_intron MGP_C3HHeJ_T0021520.1 MGP_C3HHeJ_G0016177.1 mouse_genomes_project 1 122659613 122665187 + MGP_C3HHeJ_P0021520 En1 protein_coding protein_coding MGP_C3HHeJ_T0000727.1 MGP_C3HHeJ_G0000672.1 mouse_genomes_project 1 181868729 181869525 - TEC TEC MGP_C3HHeJ_T0021288.1 MGP_C3HHeJ_G0016125.1 mouse_genomes_project 1 98975262 99031422 - MGP_C3HHeJ_P0021288 D1Ertd622e protein_coding protein_coding MGP_C3HHeJ_T0021289.1 MGP_C3HHeJ_G0016125.1 mouse_genomes_project 1 99015298 99031024 - MGP_C3HHeJ_P0021289 D1Ertd622e protein_coding protein_coding MGP_C3HHeJ_T0099890.1 MGP_C3HHeJ_G0038084.1 mouse_genomes_project 1 146710314 146710449 + Gm25663 snoRNA snoRNA MGP_C3HHeJ_T0099821.1 MGP_C3HHeJ_G0038015.1 mouse_genomes_project 1 8060189 8060280 + Gm22963 snoRNA snoRNA MGP_C3HHeJ_T0020676.1 MGP_C3HHeJ_G0015991.1 mouse_genomes_project 1 83677791 83680192 + MGP_C3HHeJ_P0020676 Ccl20 protein_coding protein_coding MGP_C3HHeJ_T0020677.1 MGP_C3HHeJ_G0015991.1 mouse_genomes_project 1 83677799 83680193 + MGP_C3HHeJ_P0020677 Ccl20 protein_coding protein_coding MGP_C3HHeJ_T0020678.1 MGP_C3HHeJ_G0015991.1 mouse_genomes_project 1 83677818 83680193 + MGP_C3HHeJ_P0020678 Ccl20 protein_coding protein_coding MGP_C3HHeJ_T0020466.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75560085 75567430 - MGP_C3HHeJ_P0020466 Resp18 protein_coding protein_coding MGP_C3HHeJ_T0020467.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75560087 75562152 - Resp18 protein_coding retained_intron MGP_C3HHeJ_T0020468.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75560197 75567331 - MGP_C3HHeJ_P0020468 Resp18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020469.1 MGP_C3HHeJ_G0015952.1 mouse_genomes_project 1 75561958 75567299 - Resp18 protein_coding retained_intron MGP_C3HHeJ_T0000387.1 MGP_C3HHeJ_G0000335.1 mouse_genomes_project 1 23437901 23441495 - TEC TEC MGP_C3HHeJ_T0023963.1 MGP_C3HHeJ_G0016699.1 mouse_genomes_project 1 196438579 196451320 + MGP_C3HHeJ_P0023963 Nsl1 protein_coding protein_coding MGP_C3HHeJ_T0023964.1 MGP_C3HHeJ_G0016699.1 mouse_genomes_project 1 196438591 196453053 + MGP_C3HHeJ_P0023964 Nsl1 protein_coding protein_coding MGP_C3HHeJ_T0023965.1 MGP_C3HHeJ_G0016699.1 mouse_genomes_project 1 196438598 196465185 + MGP_C3HHeJ_P0023965 Nsl1 protein_coding protein_coding MGP_C3HHeJ_T0009430.1 MGP_C3HHeJ_G0007563.1 mouse_genomes_project 1 94009650 94009716 + Mir149 miRNA miRNA MGP_C3HHeJ_T0005884.1 MGP_C3HHeJ_G0004923.1 mouse_genomes_project 1 163519583 163522214 - Gm37294 lincRNA lincRNA MGP_C3HHeJ_T0101328.1 MGP_C3HHeJ_G0039411.1 mouse_genomes_project 1 18780602 18793522 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101329.1 MGP_C3HHeJ_G0039411.1 mouse_genomes_project 1 18780994 18793355 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101330.1 MGP_C3HHeJ_G0039411.1 mouse_genomes_project 1 18785228 18793457 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0018619.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098237 7143821 - MGP_C3HHeJ_P0018619 Ppp1r42 protein_coding protein_coding MGP_C3HHeJ_T0018620.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098237 7119282 - MGP_C3HHeJ_P0018620 Ppp1r42 protein_coding protein_coding MGP_C3HHeJ_T0018621.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098237 7137290 - MGP_C3HHeJ_P0018621 Ppp1r42 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018622.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7098436 7143815 - MGP_C3HHeJ_P0018622 Ppp1r42 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018623.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7108422 7143815 - MGP_C3HHeJ_P0018623 Ppp1r42 protein_coding protein_coding MGP_C3HHeJ_T0018624.1 MGP_C3HHeJ_G0015603.1 mouse_genomes_project 1 7128641 7143815 - Ppp1r42 protein_coding retained_intron MGP_C3HHeJ_T0098316.1 MGP_C3HHeJ_G0036528.1 mouse_genomes_project 1 69750119 69753606 - Gm29112 sense_intronic sense_intronic MGP_C3HHeJ_T0000495.1 MGP_C3HHeJ_G0000442.1 mouse_genomes_project 1 80049588 80051104 - TEC TEC MGP_C3HHeJ_T0000775.1 MGP_C3HHeJ_G0000717.1 mouse_genomes_project 1 200171001 200174565 + TEC TEC MGP_C3HHeJ_T0002760.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864323 71868933 + Apol7d antisense antisense MGP_C3HHeJ_T0002761.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864374 71873523 + Apol7d antisense antisense MGP_C3HHeJ_T0002762.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864821 71874313 + Apol7d antisense antisense MGP_C3HHeJ_T0002763.1 MGP_C3HHeJ_G0002620.1 mouse_genomes_project 1 71864825 71868721 + Apol7d antisense antisense MGP_C3HHeJ_T0019651.1 MGP_C3HHeJ_G0015804.1 mouse_genomes_project 1 54737056 54748354 + MGP_C3HHeJ_P0019651 Mars2 protein_coding protein_coding MGP_C3HHeJ_T0018874.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21465092 21528943 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018875.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21465855 21542398 - MGP_C3HHeJ_P0018875 Smap1 protein_coding protein_coding MGP_C3HHeJ_T0018876.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21466408 21468008 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018877.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21466659 21542266 - MGP_C3HHeJ_P0018877 Smap1 protein_coding protein_coding MGP_C3HHeJ_T0018878.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21468510 21489123 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018879.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21468763 21528910 - Smap1 protein_coding processed_transcript MGP_C3HHeJ_T0018880.1 MGP_C3HHeJ_G0015657.1 mouse_genomes_project 1 21469025 21507970 - Smap1 protein_coding retained_intron MGP_C3HHeJ_T0009440.1 MGP_C3HHeJ_G0007573.1 mouse_genomes_project 1 120955537 120955618 + Mir6346 miRNA miRNA MGP_C3HHeJ_T0000439.1 MGP_C3HHeJ_G0000386.1 mouse_genomes_project 1 53223565 53225022 + TEC TEC MGP_C3HHeJ_T0000694.1 MGP_C3HHeJ_G0000639.1 mouse_genomes_project 1 166071757 166074021 + TEC TEC MGP_C3HHeJ_T0011161.1 MGP_C3HHeJ_G0009294.1 mouse_genomes_project 1 133491623 133491976 - Gm25717 misc_RNA misc_RNA MGP_C3HHeJ_T0005896.1 MGP_C3HHeJ_G0004932.1 mouse_genomes_project 1 168153383 168164957 + Gm26685 lincRNA lincRNA MGP_C3HHeJ_T0005804.1 MGP_C3HHeJ_G0004859.1 mouse_genomes_project 1 121926165 121934241 + lincRNA lincRNA MGP_C3HHeJ_T0019870.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59874387 59903691 - MGP_C3HHeJ_P0019870 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019871.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59881922 59904428 - MGP_C3HHeJ_P0019871 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019872.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59881922 59903929 - MGP_C3HHeJ_P0019872 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019873.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59888140 59891600 - Wdr12 protein_coding retained_intron MGP_C3HHeJ_T0019874.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59888850 59891777 - Wdr12 protein_coding processed_transcript MGP_C3HHeJ_T0019875.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59893878 59903918 - MGP_C3HHeJ_P0019875 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019876.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59893878 59903908 - MGP_C3HHeJ_P0019876 Wdr12 protein_coding protein_coding MGP_C3HHeJ_T0019877.1 MGP_C3HHeJ_G0015843.1 mouse_genomes_project 1 59899835 59903480 - Wdr12 protein_coding retained_intron MGP_C3HHeJ_T0021542.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125463166 126226313 - MGP_C3HHeJ_P0021542 Dpp10 protein_coding protein_coding MGP_C3HHeJ_T0021543.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125473189 126224665 - MGP_C3HHeJ_P0021543 Dpp10 protein_coding protein_coding MGP_C3HHeJ_T0021544.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125763306 125810951 - Dpp10 protein_coding processed_transcript MGP_C3HHeJ_T0021545.1 MGP_C3HHeJ_G0016182.1 mouse_genomes_project 1 125784721 126224757 - Dpp10 protein_coding processed_transcript MGP_C3HHeJ_T0019585.1 MGP_C3HHeJ_G0015792.1 mouse_genomes_project 1 53186343 53217347 - MGP_C3HHeJ_P0019585 Stk17b protein_coding protein_coding MGP_C3HHeJ_T0019586.1 MGP_C3HHeJ_G0015792.1 mouse_genomes_project 1 53192823 53194944 - Stk17b protein_coding retained_intron MGP_C3HHeJ_T0012089.1 MGP_C3HHeJ_G0010193.1 mouse_genomes_project 1 112214978 112215516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012019.1 MGP_C3HHeJ_G0010123.1 mouse_genomes_project 1 81431211 81431678 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012145.1 MGP_C3HHeJ_G0010249.1 mouse_genomes_project 1 139132971 139133343 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009388.1 MGP_C3HHeJ_G0007521.1 mouse_genomes_project 1 27958569 27958679 + Gm23771 miRNA miRNA MGP_C3HHeJ_T0019120.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34985716 34997625 - MGP_C3HHeJ_P0019120 Actr1b protein_coding protein_coding MGP_C3HHeJ_T0019121.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34988815 34989252 - Actr1b protein_coding retained_intron MGP_C3HHeJ_T0019122.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34989303 34997564 - Actr1b protein_coding retained_intron MGP_C3HHeJ_T0019123.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34989394 34997295 - MGP_C3HHeJ_P0019123 Actr1b protein_coding protein_coding MGP_C3HHeJ_T0019124.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34989415 35003165 - MGP_C3HHeJ_P0019124 Actr1b protein_coding protein_coding MGP_C3HHeJ_T0019125.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34990107 34994788 - Actr1b protein_coding retained_intron MGP_C3HHeJ_T0019126.1 MGP_C3HHeJ_G0015702.1 mouse_genomes_project 1 34994162 34997536 - Actr1b protein_coding processed_transcript MGP_C3HHeJ_T0012092.1 MGP_C3HHeJ_G0010196.1 mouse_genomes_project 1 113672491 113675682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022241.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146636964 146676748 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022242.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146663933 146676750 + MGP_C3HHeJ_P0022242 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022243.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664461 146672712 + Glrx2 protein_coding processed_transcript MGP_C3HHeJ_T0022244.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664461 146679373 + MGP_C3HHeJ_P0022244 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022245.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664470 146673078 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022246.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664514 146672815 + Glrx2 protein_coding processed_transcript MGP_C3HHeJ_T0022247.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664519 146676750 + MGP_C3HHeJ_P0022247 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022248.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664522 146675573 + MGP_C3HHeJ_P0022248 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022249.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146664550 146677283 + MGP_C3HHeJ_P0022249 Glrx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022250.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146665279 146680906 + MGP_C3HHeJ_P0022250 Glrx2 protein_coding protein_coding MGP_C3HHeJ_T0022251.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146673387 146675638 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022252.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146674958 146676660 + Glrx2 protein_coding retained_intron MGP_C3HHeJ_T0022253.1 MGP_C3HHeJ_G0016330.1 mouse_genomes_project 1 146675944 146676749 + Glrx2 protein_coding processed_transcript MGP_C3HHeJ_T0005802.1 MGP_C3HHeJ_G0004858.1 mouse_genomes_project 1 121553287 121559977 - 3830432H09Rik lincRNA lincRNA MGP_C3HHeJ_T0005803.1 MGP_C3HHeJ_G0004858.1 mouse_genomes_project 1 121554100 121559057 - 3830432H09Rik lincRNA lincRNA MGP_C3HHeJ_T0011868.1 MGP_C3HHeJ_G0009972.1 mouse_genomes_project 1 32135763 32136097 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020877.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88289810 88326522 - MGP_C3HHeJ_P0020877 Ngef protein_coding protein_coding MGP_C3HHeJ_T0020878.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88289810 88395577 - MGP_C3HHeJ_P0020878 Ngef protein_coding protein_coding MGP_C3HHeJ_T0020879.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88291661 88299145 - MGP_C3HHeJ_P0020879 Ngef protein_coding protein_coding MGP_C3HHeJ_T0020880.1 MGP_C3HHeJ_G0016032.1 mouse_genomes_project 1 88292705 88299185 - Ngef protein_coding retained_intron MGP_C3HHeJ_T0002818.1 MGP_C3HHeJ_G0002661.1 mouse_genomes_project 1 133660615 133664031 + Gm28913 antisense antisense MGP_C3HHeJ_T0020085.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447406 66687847 + MGP_C3HHeJ_P0020085 Unc80 protein_coding protein_coding MGP_C3HHeJ_T0020086.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447453 66490132 + MGP_C3HHeJ_P0020086 Unc80 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020087.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447469 66467313 + Unc80 protein_coding retained_intron MGP_C3HHeJ_T0020088.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66447486 66671192 + MGP_C3HHeJ_P0020088 Unc80 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020089.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66662094 66662672 + Unc80 protein_coding retained_intron MGP_C3HHeJ_T0020090.1 MGP_C3HHeJ_G0015882.1 mouse_genomes_project 1 66668034 66684626 + MGP_C3HHeJ_P0020090 Unc80 protein_coding protein_coding MGP_C3HHeJ_T0000714.1 MGP_C3HHeJ_G0000659.1 mouse_genomes_project 1 179965213 179967023 - TEC TEC MGP_C3HHeJ_T0101339.1 MGP_C3HHeJ_G0039416.1 mouse_genomes_project 1 174086800 174088498 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101340.1 MGP_C3HHeJ_G0039416.1 mouse_genomes_project 1 174088138 174088339 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0009467.1 MGP_C3HHeJ_G0007600.1 mouse_genomes_project 1 177888474 177888544 + Gm44339 miRNA miRNA MGP_C3HHeJ_T0002915.1 MGP_C3HHeJ_G0002739.1 mouse_genomes_project 1 192837864 192873435 - Gm36388 antisense antisense MGP_C3HHeJ_T0000737.1 MGP_C3HHeJ_G0000681.1 mouse_genomes_project 1 185445531 185449264 - TEC TEC MGP_C3HHeJ_T0005642.1 MGP_C3HHeJ_G0004731.1 mouse_genomes_project 1 42402478 42402977 - Gm29156 lincRNA lincRNA MGP_C3HHeJ_T0011813.1 MGP_C3HHeJ_G0009917.1 mouse_genomes_project 1 15404194 15407320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000669.1 MGP_C3HHeJ_G0000614.1 mouse_genomes_project 1 160728141 160729318 - TEC TEC MGP_C3HHeJ_T0011148.1 MGP_C3HHeJ_G0009281.1 mouse_genomes_project 1 36338935 36339172 + Gm23409 misc_RNA misc_RNA MGP_C3HHeJ_T0022028.1 MGP_C3HHeJ_G0016288.1 mouse_genomes_project 1 137829080 137834078 - MGP_C3HHeJ_P0022028 Elf3 protein_coding protein_coding MGP_C3HHeJ_T0022029.1 MGP_C3HHeJ_G0016288.1 mouse_genomes_project 1 137829084 137833948 - MGP_C3HHeJ_P0022029 Elf3 protein_coding protein_coding MGP_C3HHeJ_T0022030.1 MGP_C3HHeJ_G0016288.1 mouse_genomes_project 1 137832175 137833168 - Elf3 protein_coding retained_intron MGP_C3HHeJ_T0018719.1 MGP_C3HHeJ_G0015615.1 mouse_genomes_project 1 10851753 10898072 - MGP_C3HHeJ_P0018719 Lactb2 protein_coding protein_coding MGP_C3HHeJ_T0018720.1 MGP_C3HHeJ_G0015615.1 mouse_genomes_project 1 10858597 10867015 - Lactb2 protein_coding retained_intron MGP_C3HHeJ_T0022678.1 MGP_C3HHeJ_G0016407.1 mouse_genomes_project 1 163698803 163705471 + MGP_C3HHeJ_P0022678 Mrps14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022679.1 MGP_C3HHeJ_G0016407.1 mouse_genomes_project 1 163698803 163713724 + MGP_C3HHeJ_P0022679 Mrps14 protein_coding protein_coding MGP_C3HHeJ_T0022680.1 MGP_C3HHeJ_G0016407.1 mouse_genomes_project 1 163698891 163705463 + MGP_C3HHeJ_P0022680 Mrps14 protein_coding protein_coding MGP_C3HHeJ_T0000614.1 MGP_C3HHeJ_G0000560.1 mouse_genomes_project 1 139932626 139934542 + TEC TEC MGP_C3HHeJ_T0099891.1 MGP_C3HHeJ_G0038085.1 mouse_genomes_project 1 148235201 148235328 - Gm25460 snoRNA snoRNA MGP_C3HHeJ_T0021202.1 MGP_C3HHeJ_G0016106.1 mouse_genomes_project 1 94516198 94548594 + MGP_C3HHeJ_P0021202 Ppp1r7 protein_coding protein_coding MGP_C3HHeJ_T0021203.1 MGP_C3HHeJ_G0016106.1 mouse_genomes_project 1 94516999 94525966 + MGP_C3HHeJ_P0021203 Ppp1r7 protein_coding protein_coding MGP_C3HHeJ_T0021204.1 MGP_C3HHeJ_G0016106.1 mouse_genomes_project 1 94517051 94525897 + MGP_C3HHeJ_P0021204 Ppp1r7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000361.1 MGP_C3HHeJ_G0000311.1 mouse_genomes_project 1 13559488 13561809 - TEC TEC MGP_C3HHeJ_T0012187.1 MGP_C3HHeJ_G0010291.1 mouse_genomes_project 1 155607989 155608441 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019773.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386930 58391156 + protein_coding processed_transcript MGP_C3HHeJ_T0019774.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386930 58436244 + protein_coding processed_transcript MGP_C3HHeJ_T0019775.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386932 58414908 + protein_coding processed_transcript MGP_C3HHeJ_T0019776.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386938 58391573 + protein_coding processed_transcript MGP_C3HHeJ_T0019777.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386956 58391159 + protein_coding processed_transcript MGP_C3HHeJ_T0019778.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58386966 58396003 + protein_coding processed_transcript MGP_C3HHeJ_T0019779.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58387138 58435825 + MGP_C3HHeJ_P0019779 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019780.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58390563 58416889 + MGP_C3HHeJ_P0019780 protein_coding protein_coding MGP_C3HHeJ_T0019781.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58390571 58401519 + protein_coding processed_transcript MGP_C3HHeJ_T0019782.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58391155 58396011 + protein_coding retained_intron MGP_C3HHeJ_T0019783.1 MGP_C3HHeJ_G0015827.1 mouse_genomes_project 1 58410063 58434356 + protein_coding processed_transcript MGP_C3HHeJ_T0023001.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170105276 170130225 - MGP_C3HHeJ_P0023001 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023002.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170112882 170129834 - MGP_C3HHeJ_P0023002 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023003.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170114268 170130271 - MGP_C3HHeJ_P0023003 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023004.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170116051 170130230 - MGP_C3HHeJ_P0023004 Pogk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023005.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170116823 170130306 - MGP_C3HHeJ_P0023005 Pogk protein_coding protein_coding MGP_C3HHeJ_T0023006.1 MGP_C3HHeJ_G0016471.1 mouse_genomes_project 1 170123792 170129732 - MGP_C3HHeJ_P0023006 Pogk protein_coding protein_coding MGP_C3HHeJ_T0005648.1 MGP_C3HHeJ_G0004736.1 mouse_genomes_project 1 50021147 50023474 + Gm28321 lincRNA lincRNA MGP_C3HHeJ_T0009479.1 MGP_C3HHeJ_G0007612.1 mouse_genomes_project 1 200320133 200320197 + Mir3962 miRNA miRNA MGP_C3HHeJ_T0009385.1 MGP_C3HHeJ_G0007518.1 mouse_genomes_project 1 27238273 27238361 + Gm22679 miRNA miRNA MGP_C3HHeJ_T0019569.1 MGP_C3HHeJ_G0015788.1 mouse_genomes_project 1 52547750 52552609 + Ormdl1 protein_coding retained_intron MGP_C3HHeJ_T0019570.1 MGP_C3HHeJ_G0015788.1 mouse_genomes_project 1 52547750 52566014 + MGP_C3HHeJ_P0019570 Ormdl1 protein_coding protein_coding MGP_C3HHeJ_T0011971.1 MGP_C3HHeJ_G0010075.1 mouse_genomes_project 1 60950868 60953495 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012158.1 MGP_C3HHeJ_G0010262.1 mouse_genomes_project 1 142887747 142893237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019468.1 MGP_C3HHeJ_G0015773.1 mouse_genomes_project 1 50505725 50520175 + MGP_C3HHeJ_P0019468 Sdpr protein_coding protein_coding MGP_C3HHeJ_T0020954.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89208879 89229666 - MGP_C3HHeJ_P0020954 protein_coding protein_coding MGP_C3HHeJ_T0020955.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89211237 89229640 - MGP_C3HHeJ_P0020955 protein_coding protein_coding MGP_C3HHeJ_T0020956.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89212371 89229418 - MGP_C3HHeJ_P0020956 protein_coding protein_coding MGP_C3HHeJ_T0020957.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89216656 89220569 - MGP_C3HHeJ_P0020957 protein_coding protein_coding MGP_C3HHeJ_T0020958.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89220513 89224399 - protein_coding retained_intron MGP_C3HHeJ_T0020959.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89220554 89222563 - protein_coding retained_intron MGP_C3HHeJ_T0020960.1 MGP_C3HHeJ_G0016050.1 mouse_genomes_project 1 89226243 89229662 - protein_coding retained_intron MGP_C3HHeJ_T0021166.1 MGP_C3HHeJ_G0016098.1 mouse_genomes_project 1 94166618 94173763 + MGP_C3HHeJ_P0021166 Aqp12 protein_coding protein_coding MGP_C3HHeJ_T0011951.1 MGP_C3HHeJ_G0010055.1 mouse_genomes_project 1 57150136 57152890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021936.1 MGP_C3HHeJ_G0016267.1 mouse_genomes_project 1 136630288 136667756 + MGP_C3HHeJ_P0021936 Chit1 protein_coding protein_coding MGP_C3HHeJ_T0021937.1 MGP_C3HHeJ_G0016267.1 mouse_genomes_project 1 136630288 136667756 + MGP_C3HHeJ_P0021937 Chit1 protein_coding protein_coding MGP_C3HHeJ_T0021938.1 MGP_C3HHeJ_G0016267.1 mouse_genomes_project 1 136653907 136667755 + MGP_C3HHeJ_P0021938 Chit1 protein_coding protein_coding MGP_C3HHeJ_T0021965.1 MGP_C3HHeJ_G0016274.1 mouse_genomes_project 1 136914185 136919223 + MGP_C3HHeJ_P0021965 4933406M09Rik protein_coding protein_coding MGP_C3HHeJ_T0097955.1 MGP_C3HHeJ_G0036167.1 mouse_genomes_project 1 45223479 45223598 + n-R5s211 rRNA rRNA MGP_C3HHeJ_T0005673.1 MGP_C3HHeJ_G0004755.1 mouse_genomes_project 1 61099650 61105874 - Gm28083 lincRNA lincRNA MGP_C3HHeJ_T0098325.1 MGP_C3HHeJ_G0036536.1 mouse_genomes_project 1 137989729 137994323 - Gm28277 sense_intronic sense_intronic MGP_C3HHeJ_T0023492.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365253 181440052 - MGP_C3HHeJ_P0023492 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023493.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365262 181446952 - MGP_C3HHeJ_P0023493 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023494.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365262 181387555 - MGP_C3HHeJ_P0023494 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023495.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365263 181426561 - MGP_C3HHeJ_P0023495 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023496.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365701 181382351 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023497.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365739 181388738 - MGP_C3HHeJ_P0023497 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023498.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181365941 181426571 - MGP_C3HHeJ_P0023498 Cep170 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023499.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181366750 181382000 - MGP_C3HHeJ_P0023499 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023500.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181367188 181386619 - Cep170 protein_coding processed_transcript MGP_C3HHeJ_T0023501.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181372083 181374706 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023502.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181387373 181421176 - MGP_C3HHeJ_P0023502 Cep170 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023503.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181404931 181411230 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023504.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181406690 181415240 - MGP_C3HHeJ_P0023504 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023505.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181411364 181446952 - MGP_C3HHeJ_P0023505 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0023506.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181421328 181440058 - Cep170 protein_coding retained_intron MGP_C3HHeJ_T0023507.1 MGP_C3HHeJ_G0016607.1 mouse_genomes_project 1 181421405 181440052 - MGP_C3HHeJ_P0023507 Cep170 protein_coding protein_coding MGP_C3HHeJ_T0000748.1 MGP_C3HHeJ_G0000691.1 mouse_genomes_project 1 188049807 188053258 + TEC TEC MGP_C3HHeJ_T0000335.1 MGP_C3HHeJ_G0000285.1 mouse_genomes_project 1 4279860 4283890 + TEC TEC MGP_C3HHeJ_T0012002.1 MGP_C3HHeJ_G0010106.1 mouse_genomes_project 1 71345115 71345890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018659.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7278345 7376086 - MGP_C3HHeJ_P0018659 Arfgef1 protein_coding protein_coding MGP_C3HHeJ_T0018660.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7279464 7282479 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018661.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7288177 7295322 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018662.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7297202 7300856 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018663.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7301549 7302612 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018664.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7315516 7376086 - MGP_C3HHeJ_P0018664 Arfgef1 protein_coding protein_coding MGP_C3HHeJ_T0018665.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7352405 7353567 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0018666.1 MGP_C3HHeJ_G0015606.1 mouse_genomes_project 1 7352620 7357688 - Arfgef1 protein_coding retained_intron MGP_C3HHeJ_T0011962.1 MGP_C3HHeJ_G0010066.1 mouse_genomes_project 1 60343733 60343983 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019366.1 MGP_C3HHeJ_G0015752.1 mouse_genomes_project 1 42387321 42399283 + MGP_C3HHeJ_P0019366 1500015O10Rik protein_coding protein_coding MGP_C3HHeJ_T0011985.1 MGP_C3HHeJ_G0010089.1 mouse_genomes_project 1 64366062 64366280 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016862.1 MGP_C3HHeJ_G0014886.1 mouse_genomes_project 1 176855315 176868140 - 4933439K11Rik processed_transcript lincRNA MGP_C3HHeJ_T0016863.1 MGP_C3HHeJ_G0014886.1 mouse_genomes_project 1 176858829 176868277 - 4933439K11Rik processed_transcript lincRNA MGP_C3HHeJ_T0016864.1 MGP_C3HHeJ_G0014886.1 mouse_genomes_project 1 176866720 176875568 - 4933439K11Rik processed_transcript antisense MGP_C3HHeJ_T0009447.1 MGP_C3HHeJ_G0007580.1 mouse_genomes_project 1 138037937 138038018 - Mir1231 miRNA miRNA MGP_C3HHeJ_T0101594.1 MGP_C3HHeJ_G0039560.1 mouse_genomes_project 1 177483677 177484860 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098568.1 MGP_C3HHeJ_G0036766.1 mouse_genomes_project 1 107006908 107039445 - sense_overlapping sense_overlapping MGP_C3HHeJ_T0000595.1 MGP_C3HHeJ_G0000542.1 mouse_genomes_project 1 133102701 133104392 - TEC TEC MGP_C3HHeJ_T0023386.1 MGP_C3HHeJ_G0016566.1 mouse_genomes_project 1 177546239 177547273 + MGP_C3HHeJ_P0023386 Olfr1404 protein_coding protein_coding MGP_C3HHeJ_T0012064.1 MGP_C3HHeJ_G0010168.1 mouse_genomes_project 1 102108084 102108751 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012071.1 MGP_C3HHeJ_G0010175.1 mouse_genomes_project 1 105892588 105892895 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000611.1 MGP_C3HHeJ_G0000557.1 mouse_genomes_project 1 138110005 138112251 - TEC TEC MGP_C3HHeJ_T0098632.1 MGP_C3HHeJ_G0036826.1 mouse_genomes_project 1 88058368 88058469 + Gm26187 snRNA snRNA MGP_C3HHeJ_T0020221.1 MGP_C3HHeJ_G0015910.1 mouse_genomes_project 1 74452825 74459767 + MGP_C3HHeJ_P0020221 Cxcr2 protein_coding protein_coding MGP_C3HHeJ_T0011818.1 MGP_C3HHeJ_G0009922.1 mouse_genomes_project 1 16804580 16805052 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012046.1 MGP_C3HHeJ_G0010150.1 mouse_genomes_project 1 92557983 92560101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101337.1 MGP_C3HHeJ_G0039415.1 mouse_genomes_project 1 98721112 98834664 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101338.1 MGP_C3HHeJ_G0039415.1 mouse_genomes_project 1 98824395 98941746 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0097969.1 MGP_C3HHeJ_G0036181.1 mouse_genomes_project 1 152947280 152947415 + n-R5s219 rRNA rRNA MGP_C3HHeJ_T0005569.1 MGP_C3HHeJ_G0004680.1 mouse_genomes_project 1 4514762 4520229 - lincRNA retained_intron MGP_C3HHeJ_T0005888.1 MGP_C3HHeJ_G0004925.1 mouse_genomes_project 1 164350655 164353569 + Gm37083 lincRNA lincRNA MGP_C3HHeJ_T0099835.1 MGP_C3HHeJ_G0038029.1 mouse_genomes_project 1 29302265 29302392 - Gm26145 snoRNA snoRNA MGP_C3HHeJ_T0023857.1 MGP_C3HHeJ_G0016682.1 mouse_genomes_project 1 192182799 192186011 + MGP_C3HHeJ_P0023857 D1Pas1 protein_coding protein_coding MGP_C3HHeJ_T0005859.1 MGP_C3HHeJ_G0004904.1 mouse_genomes_project 1 152198522 152222777 + Gm29020 lincRNA lincRNA MGP_C3HHeJ_T0005984.1 MGP_C3HHeJ_G0005001.1 mouse_genomes_project 1 196902033 196905029 - Gm37432 lincRNA lincRNA MGP_C3HHeJ_T0021876.1 MGP_C3HHeJ_G0016252.1 mouse_genomes_project 1 135787421 135807930 + MGP_C3HHeJ_P0021876 protein_coding protein_coding MGP_C3HHeJ_T0021877.1 MGP_C3HHeJ_G0016252.1 mouse_genomes_project 1 135787421 135807964 + MGP_C3HHeJ_P0021877 protein_coding protein_coding MGP_C3HHeJ_T0021882.1 MGP_C3HHeJ_G0016252.1 mouse_genomes_project 1 135802236 135807964 + MGP_C3HHeJ_P0021882 protein_coding protein_coding MGP_C3HHeJ_T0002811.1 MGP_C3HHeJ_G0002656.1 mouse_genomes_project 1 130197617 130205543 + Gm28800 antisense antisense MGP_C3HHeJ_T0012060.1 MGP_C3HHeJ_G0010164.1 mouse_genomes_project 1 101468455 101469019 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000622.1 MGP_C3HHeJ_G0000567.1 mouse_genomes_project 1 140642637 140646650 + TEC TEC MGP_C3HHeJ_T0000682.1 MGP_C3HHeJ_G0000627.1 mouse_genomes_project 1 164140171 164142251 - TEC TEC MGP_C3HHeJ_T0009439.1 MGP_C3HHeJ_G0007572.1 mouse_genomes_project 1 108227892 108228028 - Mir3473f miRNA miRNA MGP_C3HHeJ_T0000661.1 MGP_C3HHeJ_G0000606.1 mouse_genomes_project 1 159377843 159381641 - TEC TEC MGP_C3HHeJ_T0098261.1 MGP_C3HHeJ_G0036473.1 mouse_genomes_project 1 129557143 129557273 + Gm23370 scaRNA scaRNA MGP_C3HHeJ_T0020898.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578089 88594682 + MGP_C3HHeJ_P0020898 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020899.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578232 88619755 + MGP_C3HHeJ_P0020899 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020900.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578275 88592685 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020901.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578295 88613526 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020902.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578295 88619749 + MGP_C3HHeJ_P0020902 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020903.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578305 88619752 + MGP_C3HHeJ_P0020903 Atg16l1 protein_coding protein_coding MGP_C3HHeJ_T0020904.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578307 88619752 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020905.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88578312 88590671 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020906.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88589588 88599896 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020907.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88600318 88603712 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0020908.1 MGP_C3HHeJ_G0016035.1 mouse_genomes_project 1 88603211 88615889 + Atg16l1 protein_coding retained_intron MGP_C3HHeJ_T0000724.1 MGP_C3HHeJ_G0000669.1 mouse_genomes_project 1 181710991 181712292 - TEC TEC MGP_C3HHeJ_T0011151.1 MGP_C3HHeJ_G0009284.1 mouse_genomes_project 1 49743927 49744241 + Gm25843 misc_RNA misc_RNA MGP_C3HHeJ_T0005957.1 MGP_C3HHeJ_G0004978.1 mouse_genomes_project 1 189652560 189685182 - 1700112H15Rik lincRNA lincRNA MGP_C3HHeJ_T0021602.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130115373 130182005 + MGP_C3HHeJ_P0021602 Rab3gap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021603.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130115410 130181997 + MGP_C3HHeJ_P0021603 Rab3gap1 protein_coding protein_coding MGP_C3HHeJ_T0021604.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130115439 130140674 + Rab3gap1 protein_coding retained_intron MGP_C3HHeJ_T0021605.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130137564 130142577 + Rab3gap1 protein_coding retained_intron MGP_C3HHeJ_T0021606.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130161389 130164583 + Rab3gap1 protein_coding retained_intron MGP_C3HHeJ_T0021607.1 MGP_C3HHeJ_G0016193.1 mouse_genomes_project 1 130176344 130181041 + Rab3gap1 protein_coding processed_transcript MGP_C3HHeJ_T0021016.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92058451 92171965 + MGP_C3HHeJ_P0021016 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021017.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92058491 92187904 + MGP_C3HHeJ_P0021017 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021018.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92058493 92194420 + MGP_C3HHeJ_P0021018 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021019.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113146 92194424 + MGP_C3HHeJ_P0021019 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021020.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113156 92182680 + MGP_C3HHeJ_P0021020 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021021.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113209 92163926 + MGP_C3HHeJ_P0021021 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021022.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113209 92194398 + MGP_C3HHeJ_P0021022 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021023.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92113288 92193767 + MGP_C3HHeJ_P0021023 Lrrfip1 protein_coding protein_coding MGP_C3HHeJ_T0021024.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92175517 92182286 + Lrrfip1 protein_coding processed_transcript MGP_C3HHeJ_T0021025.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92175536 92180217 + Lrrfip1 protein_coding processed_transcript MGP_C3HHeJ_T0021026.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92185324 92187890 + Lrrfip1 protein_coding processed_transcript MGP_C3HHeJ_T0021027.1 MGP_C3HHeJ_G0016066.1 mouse_genomes_project 1 92190744 92193658 + Lrrfip1 protein_coding retained_intron MGP_C3HHeJ_T0000532.1 MGP_C3HHeJ_G0000479.1 mouse_genomes_project 1 91248194 91249561 - TEC TEC MGP_C3HHeJ_T0012205.1 MGP_C3HHeJ_G0010309.1 mouse_genomes_project 1 162901233 162901443 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018917.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28775973 28846597 - MGP_C3HHeJ_P0018917 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018918.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28775976 28836595 - MGP_C3HHeJ_P0018918 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018919.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28777180 28789532 - MGP_C3HHeJ_P0018919 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018920.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28779824 28787929 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018921.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28790723 28792354 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018922.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28792383 28846707 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018923.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28794106 28846939 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018924.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28799734 28846816 - MGP_C3HHeJ_P0018924 Phf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018925.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28800565 28803369 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018926.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28803942 28836409 - Phf3 protein_coding processed_transcript MGP_C3HHeJ_T0018927.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28808953 28810268 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0018928.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28810729 28846912 - MGP_C3HHeJ_P0018928 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018929.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28836408 28846264 - MGP_C3HHeJ_P0018929 Phf3 protein_coding protein_coding MGP_C3HHeJ_T0018930.1 MGP_C3HHeJ_G0015666.1 mouse_genomes_project 1 28845666 28846487 - Phf3 protein_coding retained_intron MGP_C3HHeJ_T0000426.1 MGP_C3HHeJ_G0000373.1 mouse_genomes_project 1 38551415 38554486 + TEC TEC MGP_C3HHeJ_T0019182.1 MGP_C3HHeJ_G0015711.1 mouse_genomes_project 1 35969338 35982850 - MGP_C3HHeJ_P0019182 2010300C02Rik protein_coding protein_coding MGP_C3HHeJ_T0019183.1 MGP_C3HHeJ_G0015711.1 mouse_genomes_project 1 35969338 36080827 - MGP_C3HHeJ_P0019183 2010300C02Rik protein_coding protein_coding MGP_C3HHeJ_T0019184.1 MGP_C3HHeJ_G0015711.1 mouse_genomes_project 1 35996041 36080537 - MGP_C3HHeJ_P0019184 2010300C02Rik protein_coding protein_coding MGP_C3HHeJ_T0099903.1 MGP_C3HHeJ_G0038097.1 mouse_genomes_project 1 164590310 164590394 + Mir5117 snoRNA snoRNA MGP_C3HHeJ_T0099895.1 MGP_C3HHeJ_G0038089.1 mouse_genomes_project 1 163457310 163457420 - Gm24719 snoRNA snoRNA MGP_C3HHeJ_T0012027.1 MGP_C3HHeJ_G0010131.1 mouse_genomes_project 1 83625986 83626358 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000729.1 MGP_C3HHeJ_G0000674.1 mouse_genomes_project 1 183145336 183145930 - TEC TEC MGP_C3HHeJ_T0000730.1 MGP_C3HHeJ_G0000674.1 mouse_genomes_project 1 183145382 183145928 - TEC pseudogene MGP_C3HHeJ_T0098605.1 MGP_C3HHeJ_G0036799.1 mouse_genomes_project 1 30312577 30312684 - Gm25814 snRNA snRNA MGP_C3HHeJ_T0099906.1 MGP_C3HHeJ_G0038100.1 mouse_genomes_project 1 164591041 164591118 + Snord47 snoRNA snoRNA MGP_C3HHeJ_T0023265.1 MGP_C3HHeJ_G0016535.1 mouse_genomes_project 1 176136811 176163410 + Cd84 protein_coding processed_transcript MGP_C3HHeJ_T0023266.1 MGP_C3HHeJ_G0016535.1 mouse_genomes_project 1 176137653 176152299 + MGP_C3HHeJ_P0023266 Cd84 protein_coding protein_coding MGP_C3HHeJ_T0023267.1 MGP_C3HHeJ_G0016535.1 mouse_genomes_project 1 176137721 176174049 + MGP_C3HHeJ_P0023267 Cd84 protein_coding protein_coding MGP_C3HHeJ_T0011814.1 MGP_C3HHeJ_G0009918.1 mouse_genomes_project 1 15704101 15705086 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020047.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121107 65140652 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020048.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121113 65182870 + MGP_C3HHeJ_P0020048 Pikfyve protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020049.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121117 65162027 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020050.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121118 65126886 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020051.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121120 65141120 + Pikfyve protein_coding processed_transcript MGP_C3HHeJ_T0020052.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121126 65215206 + MGP_C3HHeJ_P0020052 Pikfyve protein_coding protein_coding MGP_C3HHeJ_T0020053.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121128 65169152 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0020054.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121137 65126590 + MGP_C3HHeJ_P0020054 Pikfyve protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020055.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65121174 65210523 + MGP_C3HHeJ_P0020055 Pikfyve protein_coding protein_coding MGP_C3HHeJ_T0020056.1 MGP_C3HHeJ_G0015878.1 mouse_genomes_project 1 65131162 65152179 + Pikfyve protein_coding retained_intron MGP_C3HHeJ_T0000500.1 MGP_C3HHeJ_G0000447.1 mouse_genomes_project 1 80762912 80764730 - TEC TEC MGP_C3HHeJ_T0005687.1 MGP_C3HHeJ_G0004766.1 mouse_genomes_project 1 63948180 63951647 + Gm26649 lincRNA lincRNA MGP_C3HHeJ_T0097973.1 MGP_C3HHeJ_G0036185.1 mouse_genomes_project 1 186922765 186922881 - Gm26004 rRNA rRNA MGP_C3HHeJ_T0000624.1 MGP_C3HHeJ_G0000569.1 mouse_genomes_project 1 140682399 140683583 + TEC TEC MGP_C3HHeJ_T0101539.1 MGP_C3HHeJ_G0039505.1 mouse_genomes_project 1 15403391 15409459 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021285.1 MGP_C3HHeJ_G0016123.1 mouse_genomes_project 1 98120852 98225580 - MGP_C3HHeJ_P0021285 Slco4c1 protein_coding protein_coding MGP_C3HHeJ_T0002892.1 MGP_C3HHeJ_G0002719.1 mouse_genomes_project 1 176626404 176627072 + Gm36937 antisense antisense MGP_C3HHeJ_T0020828.1 MGP_C3HHeJ_G0016023.1 mouse_genomes_project 1 87951877 87960038 - MGP_C3HHeJ_P0020828 Ecel1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020829.1 MGP_C3HHeJ_G0016023.1 mouse_genomes_project 1 87952108 87953143 - Ecel1 protein_coding retained_intron MGP_C3HHeJ_T0020830.1 MGP_C3HHeJ_G0016023.1 mouse_genomes_project 1 87959244 87959533 - Ecel1 protein_coding processed_transcript MGP_C3HHeJ_T0021803.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134754801 134773274 + MGP_C3HHeJ_P0021803 Nuak2 protein_coding protein_coding MGP_C3HHeJ_T0021804.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134754801 134773469 + MGP_C3HHeJ_P0021804 Nuak2 protein_coding protein_coding MGP_C3HHeJ_T0021805.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134754840 134756412 + Nuak2 protein_coding processed_transcript MGP_C3HHeJ_T0021806.1 MGP_C3HHeJ_G0016239.1 mouse_genomes_project 1 134767244 134770441 + Nuak2 protein_coding retained_intron MGP_C3HHeJ_T0098654.1 MGP_C3HHeJ_G0036848.1 mouse_genomes_project 1 139344774 139344872 + Gm24086 snRNA snRNA MGP_C3HHeJ_T0000377.1 MGP_C3HHeJ_G0000325.1 mouse_genomes_project 1 22995132 22998558 - TEC TEC MGP_C3HHeJ_T0021801.1 MGP_C3HHeJ_G0016237.1 mouse_genomes_project 1 134663726 134664446 - MGP_C3HHeJ_P0021801 Gm10188 protein_coding protein_coding MGP_C3HHeJ_T0022023.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137713530 137724167 + MGP_C3HHeJ_P0022023 Arl8a protein_coding protein_coding MGP_C3HHeJ_T0022024.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137714375 137724167 + MGP_C3HHeJ_P0022024 Arl8a protein_coding protein_coding MGP_C3HHeJ_T0022025.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137718598 137720807 + Arl8a protein_coding retained_intron MGP_C3HHeJ_T0022026.1 MGP_C3HHeJ_G0016286.1 mouse_genomes_project 1 137720693 137723211 + Arl8a protein_coding retained_intron MGP_C3HHeJ_T0011927.1 MGP_C3HHeJ_G0010031.1 mouse_genomes_project 1 49223065 49224203 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021372.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108551065 108575172 + MGP_C3HHeJ_P0021372 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0021373.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108551066 108572167 + MGP_C3HHeJ_P0021373 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0021374.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108551095 108575172 + MGP_C3HHeJ_P0021374 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0021375.1 MGP_C3HHeJ_G0016141.1 mouse_genomes_project 1 108562044 108575171 + MGP_C3HHeJ_P0021375 Serpinb5 protein_coding protein_coding MGP_C3HHeJ_T0012036.1 MGP_C3HHeJ_G0010140.1 mouse_genomes_project 1 87527009 87527431 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098330.1 MGP_C3HHeJ_G0036541.1 mouse_genomes_project 1 155936515 155956950 - Gm28792 sense_intronic sense_intronic MGP_C3HHeJ_T0012246.1 MGP_C3HHeJ_G0010350.1 mouse_genomes_project 1 186079788 186080435 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019620.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54465380 54512861 - MGP_C3HHeJ_P0019620 Sf3b1 protein_coding protein_coding MGP_C3HHeJ_T0019621.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54465384 54471327 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019622.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54469164 54472753 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019623.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54484025 54512844 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019624.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54488540 54495995 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0019625.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54493053 54512774 - MGP_C3HHeJ_P0019625 Sf3b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019626.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54496602 54512753 - Sf3b1 protein_coding processed_transcript MGP_C3HHeJ_T0019627.1 MGP_C3HHeJ_G0015798.1 mouse_genomes_project 1 54496732 54497731 - Sf3b1 protein_coding retained_intron MGP_C3HHeJ_T0012236.1 MGP_C3HHeJ_G0010340.1 mouse_genomes_project 1 180963519 180964036 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000649.1 MGP_C3HHeJ_G0000594.1 mouse_genomes_project 1 154231367 154233463 + TEC TEC MGP_C3HHeJ_T0019724.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58022174 58037159 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019725.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58024847 - Clk1 protein_coding processed_transcript MGP_C3HHeJ_T0019726.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58025423 - Clk1 protein_coding processed_transcript MGP_C3HHeJ_T0019727.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58029029 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019728.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58037159 - MGP_C3HHeJ_P0019728 Clk1 protein_coding protein_coding MGP_C3HHeJ_T0019729.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58037159 - MGP_C3HHeJ_P0019729 Clk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019730.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58023985 58037159 - MGP_C3HHeJ_P0019730 Clk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019731.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58024301 58025811 - Clk1 protein_coding processed_transcript MGP_C3HHeJ_T0019732.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58026575 58032447 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019733.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58026600 58033307 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019734.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58028406 58037159 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019735.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58029173 58029690 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0019736.1 MGP_C3HHeJ_G0015820.1 mouse_genomes_project 1 58033674 58037159 - Clk1 protein_coding retained_intron MGP_C3HHeJ_T0011769.1 MGP_C3HHeJ_G0009873.1 mouse_genomes_project 1 4154785 4156088 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016815.1 MGP_C3HHeJ_G0014873.1 mouse_genomes_project 1 139028136 139031740 - 9230116N13Rik processed_transcript antisense MGP_C3HHeJ_T0016816.1 MGP_C3HHeJ_G0014873.1 mouse_genomes_project 1 139029063 139031715 - 9230116N13Rik processed_transcript retained_intron MGP_C3HHeJ_T0098318.1 MGP_C3HHeJ_G0036530.1 mouse_genomes_project 1 74604109 74606412 + Gm29358 sense_intronic sense_intronic MGP_C3HHeJ_T0098319.1 MGP_C3HHeJ_G0036530.1 mouse_genomes_project 1 74604147 74607374 + Gm29358 sense_intronic sense_intronic MGP_C3HHeJ_T0023488.1 MGP_C3HHeJ_G0016606.1 mouse_genomes_project 1 180575390 180579503 - MGP_C3HHeJ_P0023488 Rbm8a2 protein_coding protein_coding MGP_C3HHeJ_T0020641.1 MGP_C3HHeJ_G0015983.1 mouse_genomes_project 1 82839504 82963409 + MGP_C3HHeJ_P0020641 Rhbdd1 protein_coding protein_coding MGP_C3HHeJ_T0020642.1 MGP_C3HHeJ_G0015983.1 mouse_genomes_project 1 82839694 82842783 + Rhbdd1 protein_coding retained_intron MGP_C3HHeJ_T0020643.1 MGP_C3HHeJ_G0015983.1 mouse_genomes_project 1 82862121 82963409 + MGP_C3HHeJ_P0020643 Rhbdd1 protein_coding protein_coding MGP_C3HHeJ_T0018976.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32081473 32489067 + MGP_C3HHeJ_P0018976 Dst protein_coding protein_coding MGP_C3HHeJ_T0018977.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32081520 32489067 + MGP_C3HHeJ_P0018977 Dst protein_coding unknown_likely_coding MGP_C3HHeJ_T0018978.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180104 32353182 + MGP_C3HHeJ_P0018978 Dst protein_coding protein_coding MGP_C3HHeJ_T0018979.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180106 32314247 + MGP_C3HHeJ_P0018979 Dst protein_coding protein_coding MGP_C3HHeJ_T0018980.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180350 32314248 + MGP_C3HHeJ_P0018980 Dst protein_coding protein_coding MGP_C3HHeJ_T0018981.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32180404 32341525 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018982.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32186023 32490173 + MGP_C3HHeJ_P0018982 Dst protein_coding protein_coding MGP_C3HHeJ_T0018983.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32186023 32490184 + MGP_C3HHeJ_P0018983 Dst protein_coding protein_coding MGP_C3HHeJ_T0018984.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32186036 32490175 + MGP_C3HHeJ_P0018984 Dst protein_coding protein_coding MGP_C3HHeJ_T0018985.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32258162 32292439 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018986.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32297310 32331247 + Dst protein_coding processed_transcript MGP_C3HHeJ_T0018987.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32337068 32489927 + MGP_C3HHeJ_P0018987 Dst protein_coding protein_coding MGP_C3HHeJ_T0018988.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32337143 32371645 + MGP_C3HHeJ_P0018988 Dst protein_coding protein_coding MGP_C3HHeJ_T0018989.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32337143 32362290 + MGP_C3HHeJ_P0018989 Dst protein_coding protein_coding MGP_C3HHeJ_T0018990.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32338731 32342226 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018991.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32357294 32361634 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018992.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32437609 32489927 + MGP_C3HHeJ_P0018992 Dst protein_coding protein_coding MGP_C3HHeJ_T0018993.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32450977 32452700 + Dst protein_coding retained_intron MGP_C3HHeJ_T0018994.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32473900 32484938 + MGP_C3HHeJ_P0018994 Dst protein_coding protein_coding MGP_C3HHeJ_T0018995.1 MGP_C3HHeJ_G0015678.1 mouse_genomes_project 1 32474891 32488126 + MGP_C3HHeJ_P0018995 Dst protein_coding protein_coding MGP_C3HHeJ_T0009441.1 MGP_C3HHeJ_G0007574.1 mouse_genomes_project 1 130441692 130441762 + Mir128-1 miRNA miRNA MGP_C3HHeJ_T0021954.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819517 136858269 - MGP_C3HHeJ_P0021954 Ppfia4 protein_coding protein_coding MGP_C3HHeJ_T0021955.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819518 136871186 - MGP_C3HHeJ_P0021955 Ppfia4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021956.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819518 136852617 - MGP_C3HHeJ_P0021956 Ppfia4 protein_coding protein_coding MGP_C3HHeJ_T0021957.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819519 136828724 - Ppfia4 protein_coding processed_transcript MGP_C3HHeJ_T0021958.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136819523 136828686 - Ppfia4 protein_coding retained_intron MGP_C3HHeJ_T0021959.1 MGP_C3HHeJ_G0016272.1 mouse_genomes_project 1 136821115 136835484 - Ppfia4 protein_coding retained_intron MGP_C3HHeJ_T0022412.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156342587 156410042 - MGP_C3HHeJ_P0022412 Lamc2 protein_coding protein_coding MGP_C3HHeJ_T0022413.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156342587 156409642 - MGP_C3HHeJ_P0022413 Lamc2 protein_coding protein_coding MGP_C3HHeJ_T0022414.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156344004 156347066 - Lamc2 protein_coding retained_intron MGP_C3HHeJ_T0022415.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156345929 156348834 - MGP_C3HHeJ_P0022415 Lamc2 protein_coding protein_coding MGP_C3HHeJ_T0022416.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156371123 156373010 - Lamc2 protein_coding retained_intron MGP_C3HHeJ_T0022417.1 MGP_C3HHeJ_G0016361.1 mouse_genomes_project 1 156378232 156410042 - Lamc2 protein_coding retained_intron MGP_C3HHeJ_T0022625.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160896260 160967905 + MGP_C3HHeJ_P0022625 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022626.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160896342 160967908 + MGP_C3HHeJ_P0022626 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022627.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160924619 160967905 + MGP_C3HHeJ_P0022627 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022628.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160932003 160961702 + MGP_C3HHeJ_P0022628 Sec16b protein_coding protein_coding MGP_C3HHeJ_T0022629.1 MGP_C3HHeJ_G0016399.1 mouse_genomes_project 1 160936920 160943396 + Sec16b protein_coding retained_intron MGP_C3HHeJ_T0023289.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382034 176421140 + MGP_C3HHeJ_P0023289 Copa protein_coding protein_coding MGP_C3HHeJ_T0023290.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382148 176393001 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023291.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382310 176409681 + MGP_C3HHeJ_P0023291 Copa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023292.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382336 176403590 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023293.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176382337 176421145 + MGP_C3HHeJ_P0023293 Copa protein_coding protein_coding MGP_C3HHeJ_T0023294.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176394690 176400713 + Copa protein_coding processed_transcript MGP_C3HHeJ_T0023295.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176399184 176405121 + MGP_C3HHeJ_P0023295 Copa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023296.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176410921 176414300 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023297.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176413068 176421143 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023298.1 MGP_C3HHeJ_G0016541.1 mouse_genomes_project 1 176416949 176418188 + Copa protein_coding retained_intron MGP_C3HHeJ_T0023422.1 MGP_C3HHeJ_G0016581.1 mouse_genomes_project 1 178619510 178621879 + MGP_C3HHeJ_P0023422 Olfr433 protein_coding protein_coding MGP_C3HHeJ_T0011766.1 MGP_C3HHeJ_G0009870.1 mouse_genomes_project 1 4048027 4048057 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009415.1 MGP_C3HHeJ_G0007548.1 mouse_genomes_project 1 74914070 74914147 - Gm25035 miRNA miRNA MGP_C3HHeJ_T0005568.1 MGP_C3HHeJ_G0004679.1 mouse_genomes_project 1 1640253 1643376 - Gm37323 lincRNA lincRNA MGP_C3HHeJ_T0012025.1 MGP_C3HHeJ_G0010129.1 mouse_genomes_project 1 83559594 83561020 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022335.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517441 154537398 + MGP_C3HHeJ_P0022335 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0022336.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517473 154529781 + MGP_C3HHeJ_P0022336 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0022337.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517482 154537391 + MGP_C3HHeJ_P0022337 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0022338.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154517548 154536341 + MGP_C3HHeJ_P0022338 Ivns1abp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022339.1 MGP_C3HHeJ_G0016346.1 mouse_genomes_project 1 154534221 154535009 + MGP_C3HHeJ_P0022339 Ivns1abp protein_coding protein_coding MGP_C3HHeJ_T0023081.1 MGP_C3HHeJ_G0016495.1 mouse_genomes_project 1 174139768 174143075 + MGP_C3HHeJ_P0023081 1700015E13Rik protein_coding protein_coding MGP_C3HHeJ_T0000499.1 MGP_C3HHeJ_G0000446.1 mouse_genomes_project 1 80710948 80712631 - TEC TEC MGP_C3HHeJ_T0022525.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159197194 159323209 - MGP_C3HHeJ_P0022525 Cep350 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022526.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159197200 159323500 - MGP_C3HHeJ_P0022526 Cep350 protein_coding protein_coding MGP_C3HHeJ_T0022527.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159200777 159213658 - Cep350 protein_coding processed_transcript MGP_C3HHeJ_T0022528.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159215612 159239333 - Cep350 protein_coding processed_transcript MGP_C3HHeJ_T0022529.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159221008 159238124 - Cep350 protein_coding processed_transcript MGP_C3HHeJ_T0022530.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159287547 159323135 - MGP_C3HHeJ_P0022530 Cep350 protein_coding protein_coding MGP_C3HHeJ_T0022531.1 MGP_C3HHeJ_G0016383.1 mouse_genomes_project 1 159320223 159323429 - Cep350 protein_coding retained_intron MGP_C3HHeJ_T0012260.1 MGP_C3HHeJ_G0010364.1 mouse_genomes_project 1 192282326 192282651 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021119.1 MGP_C3HHeJ_G0016085.1 mouse_genomes_project 1 93717929 93719011 + MGP_C3HHeJ_P0021119 Olfr1413 protein_coding protein_coding MGP_C3HHeJ_T0022766.1 MGP_C3HHeJ_G0016422.1 mouse_genomes_project 1 165519323 165572302 - MGP_C3HHeJ_P0022766 4930558K02Rik protein_coding protein_coding MGP_C3HHeJ_T0022767.1 MGP_C3HHeJ_G0016422.1 mouse_genomes_project 1 165519328 165561883 - 4930558K02Rik protein_coding processed_transcript MGP_C3HHeJ_T0000675.1 MGP_C3HHeJ_G0000620.1 mouse_genomes_project 1 162704173 162707037 + TEC TEC MGP_C3HHeJ_T0020337.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75074798 75084806 - MGP_C3HHeJ_P0020337 Prkag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020338.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75076069 75085072 - MGP_C3HHeJ_P0020338 Prkag3 protein_coding protein_coding MGP_C3HHeJ_T0020339.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75076069 75084428 - MGP_C3HHeJ_P0020339 Prkag3 protein_coding protein_coding MGP_C3HHeJ_T0020340.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75077331 75084718 - MGP_C3HHeJ_P0020340 Prkag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020341.1 MGP_C3HHeJ_G0015930.1 mouse_genomes_project 1 75083368 75084755 - MGP_C3HHeJ_P0020341 Prkag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002782.1 MGP_C3HHeJ_G0002634.1 mouse_genomes_project 1 87700261 87858486 - Gm28375 antisense antisense MGP_C3HHeJ_T0011940.1 MGP_C3HHeJ_G0010044.1 mouse_genomes_project 1 54026588 54027167 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097972.1 MGP_C3HHeJ_G0036184.1 mouse_genomes_project 1 169496648 169496766 - Gm24808 rRNA rRNA MGP_C3HHeJ_T0005723.1 MGP_C3HHeJ_G0004791.1 mouse_genomes_project 1 77225165 77366808 - Gm816 lincRNA lincRNA MGP_C3HHeJ_T0098633.1 MGP_C3HHeJ_G0036827.1 mouse_genomes_project 1 88153517 88153624 - Gm22549 snRNA snRNA MGP_C3HHeJ_T0016829.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164587384 164590489 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016830.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164587567 164591502 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016831.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164587889 164591498 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016832.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588027 164591500 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016833.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588123 164591500 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016834.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588123 164590504 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016835.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588123 164591496 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016836.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164590013 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016837.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164591497 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016838.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016839.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588126 164591502 + Gas5 processed_transcript lincRNA MGP_C3HHeJ_T0016840.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588127 164591206 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016841.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588128 164590518 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016842.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588132 164589584 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016843.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588138 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016844.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588144 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016845.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588146 164591438 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016846.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588148 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016847.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164588979 164589845 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016848.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164589651 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016849.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590246 164591495 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016850.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590267 164591085 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016851.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590307 164591498 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016852.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590677 164591500 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0016853.1 MGP_C3HHeJ_G0014880.1 mouse_genomes_project 1 164590739 164591502 + Gas5 processed_transcript retained_intron MGP_C3HHeJ_T0000443.1 MGP_C3HHeJ_G0000390.1 mouse_genomes_project 1 54387040 54389790 - TEC TEC MGP_C3HHeJ_T0012146.1 MGP_C3HHeJ_G0010250.1 mouse_genomes_project 1 139149466 139151456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101557.1 MGP_C3HHeJ_G0039523.1 mouse_genomes_project 1 78826860 78827121 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023817.1 MGP_C3HHeJ_G0016672.1 mouse_genomes_project 1 190011203 190023469 - MGP_C3HHeJ_P0023817 C130074G19Rik protein_coding protein_coding MGP_C3HHeJ_T0000619.1 MGP_C3HHeJ_G0000565.1 mouse_genomes_project 1 140630545 140633861 + TEC TEC MGP_C3HHeJ_T0005920.1 MGP_C3HHeJ_G0004952.1 mouse_genomes_project 1 175349072 175369522 - Gm26641 lincRNA lincRNA MGP_C3HHeJ_T0021556.1 MGP_C3HHeJ_G0016184.1 mouse_genomes_project 1 127743222 127751244 + MGP_C3HHeJ_P0021556 Slc35f5 protein_coding protein_coding MGP_C3HHeJ_T0021557.1 MGP_C3HHeJ_G0016184.1 mouse_genomes_project 1 127743643 127781044 + MGP_C3HHeJ_P0021557 Slc35f5 protein_coding protein_coding MGP_C3HHeJ_T0021558.1 MGP_C3HHeJ_G0016184.1 mouse_genomes_project 1 127769740 127780377 + MGP_C3HHeJ_P0021558 Slc35f5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012074.1 MGP_C3HHeJ_G0010178.1 mouse_genomes_project 1 106237985 106238759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018998.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628358 32637809 + MGP_C3HHeJ_P0018998 Imp4 protein_coding protein_coding MGP_C3HHeJ_T0018999.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628405 32631016 + Imp4 protein_coding retained_intron MGP_C3HHeJ_T0019000.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628412 32632308 + MGP_C3HHeJ_P0019000 Imp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019001.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628412 32632839 + MGP_C3HHeJ_P0019001 Imp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019002.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628444 32632479 + Imp4 protein_coding processed_transcript MGP_C3HHeJ_T0019003.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628460 32631907 + Imp4 protein_coding processed_transcript MGP_C3HHeJ_T0019004.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32628548 32632966 + MGP_C3HHeJ_P0019004 Imp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019005.1 MGP_C3HHeJ_G0015680.1 mouse_genomes_project 1 32636699 32637391 + Imp4 protein_coding processed_transcript MGP_C3HHeJ_T0020117.1 MGP_C3HHeJ_G0015888.1 mouse_genomes_project 1 67118252 67230933 + MGP_C3HHeJ_P0020117 Cps1 protein_coding protein_coding MGP_C3HHeJ_T0011999.1 MGP_C3HHeJ_G0010103.1 mouse_genomes_project 1 69285969 69286355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012063.1 MGP_C3HHeJ_G0010167.1 mouse_genomes_project 1 102059257 102059810 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022385.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155715838 155971411 - MGP_C3HHeJ_P0022385 Rgl1 protein_coding protein_coding MGP_C3HHeJ_T0022386.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155716029 155825323 - MGP_C3HHeJ_P0022386 Rgl1 protein_coding protein_coding MGP_C3HHeJ_T0022387.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155717824 155971457 - MGP_C3HHeJ_P0022387 Rgl1 protein_coding protein_coding MGP_C3HHeJ_T0022388.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155751575 155753112 - Rgl1 protein_coding retained_intron MGP_C3HHeJ_T0022389.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155757610 155792870 - Rgl1 protein_coding processed_transcript MGP_C3HHeJ_T0022390.1 MGP_C3HHeJ_G0016355.1 mouse_genomes_project 1 155757610 155825135 - MGP_C3HHeJ_P0022390 Rgl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000602.1 MGP_C3HHeJ_G0000549.1 mouse_genomes_project 1 135598015 135601122 - TEC TEC MGP_C3HHeJ_T0000603.1 MGP_C3HHeJ_G0000549.1 mouse_genomes_project 1 135600519 135601122 - TEC TEC MGP_C3HHeJ_T0101602.1 MGP_C3HHeJ_G0039568.1 mouse_genomes_project 1 178966679 178967777 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009458.1 MGP_C3HHeJ_G0007591.1 mouse_genomes_project 1 166273446 166273509 - Gm27616 miRNA miRNA MGP_C3HHeJ_T0000683.1 MGP_C3HHeJ_G0000628.1 mouse_genomes_project 1 164145191 164148686 - TEC TEC MGP_C3HHeJ_T0000477.1 MGP_C3HHeJ_G0000424.1 mouse_genomes_project 1 68204427 68206794 - TEC TEC MGP_C3HHeJ_T0000677.1 MGP_C3HHeJ_G0000622.1 mouse_genomes_project 1 163070856 163073093 + TEC TEC MGP_C3HHeJ_T0020672.1 MGP_C3HHeJ_G0015989.1 mouse_genomes_project 1 83568713 83594751 - MGP_C3HHeJ_P0020672 Slc19a3 protein_coding protein_coding MGP_C3HHeJ_T0020673.1 MGP_C3HHeJ_G0015989.1 mouse_genomes_project 1 83568714 83576897 - Slc19a3 protein_coding processed_transcript MGP_C3HHeJ_T0020674.1 MGP_C3HHeJ_G0015989.1 mouse_genomes_project 1 83569990 83594734 - MGP_C3HHeJ_P0020674 Slc19a3 protein_coding protein_coding MGP_C3HHeJ_T0101573.1 MGP_C3HHeJ_G0039539.1 mouse_genomes_project 1 104737754 104834469 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018811.1 MGP_C3HHeJ_G0015638.1 mouse_genomes_project 1 16575747 16635602 + MGP_C3HHeJ_P0018811 Tfap2d protein_coding protein_coding MGP_C3HHeJ_T0018812.1 MGP_C3HHeJ_G0015638.1 mouse_genomes_project 1 16579892 16617762 + Tfap2d protein_coding processed_transcript MGP_C3HHeJ_T0022074.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138377518 138384530 + Tnni1 protein_coding processed_transcript MGP_C3HHeJ_T0022075.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138382493 138405019 + MGP_C3HHeJ_P0022075 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022076.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398870 138410405 + MGP_C3HHeJ_P0022076 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022077.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398889 138410050 + Tnni1 protein_coding processed_transcript MGP_C3HHeJ_T0022078.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398889 138410405 + MGP_C3HHeJ_P0022078 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022079.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398979 138410116 + MGP_C3HHeJ_P0022079 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022080.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138398987 138409158 + MGP_C3HHeJ_P0022080 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022081.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138399301 138410405 + MGP_C3HHeJ_P0022081 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0022082.1 MGP_C3HHeJ_G0016297.1 mouse_genomes_project 1 138404452 138409332 + MGP_C3HHeJ_P0022082 Tnni1 protein_coding protein_coding MGP_C3HHeJ_T0016785.1 MGP_C3HHeJ_G0014865.1 mouse_genomes_project 1 88927995 89121924 - processed_transcript processed_transcript MGP_C3HHeJ_T0016786.1 MGP_C3HHeJ_G0014865.1 mouse_genomes_project 1 89111960 89121893 - processed_transcript processed_transcript MGP_C3HHeJ_T0021395.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109361049 109379249 + MGP_C3HHeJ_P0021395 Serpinb8 protein_coding protein_coding MGP_C3HHeJ_T0021396.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109361049 109380824 + MGP_C3HHeJ_P0021396 Serpinb8 protein_coding protein_coding MGP_C3HHeJ_T0021397.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109361089 109376497 + Serpinb8 protein_coding retained_intron MGP_C3HHeJ_T0021398.1 MGP_C3HHeJ_G0016151.1 mouse_genomes_project 1 109376226 109377672 + MGP_C3HHeJ_P0021398 Serpinb8 protein_coding protein_coding MGP_C3HHeJ_T0011780.1 MGP_C3HHeJ_G0009884.1 mouse_genomes_project 1 5948883 5949222 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101542.1 MGP_C3HHeJ_G0039508.1 mouse_genomes_project 1 18657573 18667095 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012083.1 MGP_C3HHeJ_G0010187.1 mouse_genomes_project 1 109735683 109735869 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012001.1 MGP_C3HHeJ_G0010105.1 mouse_genomes_project 1 71238644 71239023 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022121.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138737281 138783813 + MGP_C3HHeJ_P0022121 Kif21b protein_coding protein_coding MGP_C3HHeJ_T0022122.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138737346 138755849 + Kif21b protein_coding retained_intron MGP_C3HHeJ_T0022123.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138737614 138783823 + MGP_C3HHeJ_P0022123 Kif21b protein_coding unknown_likely_coding MGP_C3HHeJ_T0022124.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138766184 138770871 + MGP_C3HHeJ_P0022124 Kif21b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022125.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138768775 138770657 + Kif21b protein_coding retained_intron MGP_C3HHeJ_T0022126.1 MGP_C3HHeJ_G0016305.1 mouse_genomes_project 1 138775128 138778114 + Kif21b protein_coding processed_transcript MGP_C3HHeJ_T0020036.1 MGP_C3HHeJ_G0015875.1 mouse_genomes_project 1 65032834 65053291 - MGP_C3HHeJ_P0020036 Gm28845 protein_coding protein_coding MGP_C3HHeJ_T0021690.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133264399 133269780 - MGP_C3HHeJ_P0021690 Il24 protein_coding protein_coding MGP_C3HHeJ_T0021691.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133264399 133268322 - MGP_C3HHeJ_P0021691 Il24 protein_coding protein_coding MGP_C3HHeJ_T0021692.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133264780 133269665 - MGP_C3HHeJ_P0021692 Il24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021693.1 MGP_C3HHeJ_G0016213.1 mouse_genomes_project 1 133267112 133269739 - MGP_C3HHeJ_P0021693 Il24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000712.1 MGP_C3HHeJ_G0000657.1 mouse_genomes_project 1 176829441 176831008 + TEC TEC MGP_C3HHeJ_T0000452.1 MGP_C3HHeJ_G0000399.1 mouse_genomes_project 1 59579288 59582726 + TEC TEC MGP_C3HHeJ_T0002793.1 MGP_C3HHeJ_G0002645.1 mouse_genomes_project 1 94479317 94490655 + Gm28535 antisense antisense MGP_C3HHeJ_T0005775.1 MGP_C3HHeJ_G0004837.1 mouse_genomes_project 1 97848135 97862321 - Gm29601 lincRNA lincRNA MGP_C3HHeJ_T0022953.1 MGP_C3HHeJ_G0016463.1 mouse_genomes_project 1 169474261 169486119 + MGP_C3HHeJ_P0022953 Creg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022954.1 MGP_C3HHeJ_G0016463.1 mouse_genomes_project 1 169474261 169486119 + MGP_C3HHeJ_P0022954 Creg1 protein_coding protein_coding MGP_C3HHeJ_T0022955.1 MGP_C3HHeJ_G0016463.1 mouse_genomes_project 1 169479964 169484729 + MGP_C3HHeJ_P0022955 Creg1 protein_coding protein_coding MGP_C3HHeJ_T0005666.1 MGP_C3HHeJ_G0004750.1 mouse_genomes_project 1 58123368 58130826 + Gm15834 lincRNA lincRNA MGP_C3HHeJ_T0005667.1 MGP_C3HHeJ_G0004750.1 mouse_genomes_project 1 58123372 58136221 + Gm15834 lincRNA lincRNA MGP_C3HHeJ_T0005668.1 MGP_C3HHeJ_G0004750.1 mouse_genomes_project 1 58123375 58142433 + Gm15834 lincRNA lincRNA MGP_C3HHeJ_T0012211.1 MGP_C3HHeJ_G0010315.1 mouse_genomes_project 1 166224790 166225501 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022448.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157012318 157027106 + MGP_C3HHeJ_P0022448 Rnasel protein_coding protein_coding MGP_C3HHeJ_T0022449.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157015149 157028429 + MGP_C3HHeJ_P0022449 Rnasel protein_coding protein_coding MGP_C3HHeJ_T0022450.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157015174 157027170 + MGP_C3HHeJ_P0022450 Rnasel protein_coding protein_coding MGP_C3HHeJ_T0022451.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157015190 157026953 + Rnasel protein_coding retained_intron MGP_C3HHeJ_T0022452.1 MGP_C3HHeJ_G0016368.1 mouse_genomes_project 1 157021769 157026953 + Rnasel protein_coding processed_transcript MGP_C3HHeJ_T0021933.1 MGP_C3HHeJ_G0016265.1 mouse_genomes_project 1 136549610 136560591 + MGP_C3HHeJ_P0021933 Fmod protein_coding protein_coding MGP_C3HHeJ_T0021934.1 MGP_C3HHeJ_G0016265.1 mouse_genomes_project 1 136549852 136552831 + MGP_C3HHeJ_P0021934 Fmod protein_coding protein_coding MGP_C3HHeJ_T0099909.1 MGP_C3HHeJ_G0038103.1 mouse_genomes_project 1 166718905 166719027 + Gm22434 snoRNA snoRNA MGP_C3HHeJ_T0000631.1 MGP_C3HHeJ_G0000576.1 mouse_genomes_project 1 141802519 141804980 + TEC TEC MGP_C3HHeJ_T0000385.1 MGP_C3HHeJ_G0000333.1 mouse_genomes_project 1 23401793 23405189 - TEC TEC MGP_C3HHeJ_T0005725.1 MGP_C3HHeJ_G0004793.1 mouse_genomes_project 1 78312433 78347640 - Gm28387 lincRNA lincRNA MGP_C3HHeJ_T0011884.1 MGP_C3HHeJ_G0009988.1 mouse_genomes_project 1 36875864 36876393 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020640.1 MGP_C3HHeJ_G0015982.1 mouse_genomes_project 1 82753970 82756792 + MGP_C3HHeJ_P0020640 Gm9747 protein_coding protein_coding MGP_C3HHeJ_T0005693.1 MGP_C3HHeJ_G0004772.1 mouse_genomes_project 1 68108248 68109769 + Gm15671 lincRNA lincRNA MGP_C3HHeJ_T0000456.1 MGP_C3HHeJ_G0000403.1 mouse_genomes_project 1 60422350 60423780 - TEC TEC MGP_C3HHeJ_T0012099.1 MGP_C3HHeJ_G0010203.1 mouse_genomes_project 1 114846723 114848113 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023972.1 MGP_C3HHeJ_G0016702.1 mouse_genomes_project 1 196553741 196568346 - MGP_C3HHeJ_P0023972 Atf3 protein_coding protein_coding MGP_C3HHeJ_T0023973.1 MGP_C3HHeJ_G0016702.1 mouse_genomes_project 1 196553741 196605209 - MGP_C3HHeJ_P0023973 Atf3 protein_coding protein_coding MGP_C3HHeJ_T0023974.1 MGP_C3HHeJ_G0016702.1 mouse_genomes_project 1 196554870 196568114 - Atf3 protein_coding processed_transcript MGP_C3HHeJ_T0023080.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174133711 174161468 - Nos1ap protein_coding processed_transcript MGP_C3HHeJ_T0023082.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174151298 174441553 - MGP_C3HHeJ_P0023082 Nos1ap protein_coding protein_coding MGP_C3HHeJ_T0023083.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174151338 174154615 - Nos1ap protein_coding retained_intron MGP_C3HHeJ_T0023084.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174152551 174158178 - Nos1ap protein_coding processed_transcript MGP_C3HHeJ_T0023085.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174161280 174441056 - MGP_C3HHeJ_P0023085 Nos1ap protein_coding protein_coding MGP_C3HHeJ_T0023086.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174161426 174440989 - MGP_C3HHeJ_P0023086 Nos1ap protein_coding protein_coding MGP_C3HHeJ_T0023087.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174171876 174298112 - Nos1ap protein_coding processed_transcript MGP_C3HHeJ_T0023088.1 MGP_C3HHeJ_G0016494.1 mouse_genomes_project 1 174208956 174441541 - Nos1ap protein_coding retained_intron MGP_C3HHeJ_T0022918.1 MGP_C3HHeJ_G0016457.1 mouse_genomes_project 1 168987598 169013568 + MGP_C3HHeJ_P0022918 Gpr161 protein_coding protein_coding MGP_C3HHeJ_T0022919.1 MGP_C3HHeJ_G0016457.1 mouse_genomes_project 1 168994419 169018650 + MGP_C3HHeJ_P0022919 Gpr161 protein_coding protein_coding MGP_C3HHeJ_T0101579.1 MGP_C3HHeJ_G0039545.1 mouse_genomes_project 1 109031847 109046703 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022684.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163731878 163872276 - MGP_C3HHeJ_P0022684 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022685.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163738758 163744566 - Rabgap1l protein_coding retained_intron MGP_C3HHeJ_T0022686.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163739274 163767609 - MGP_C3HHeJ_P0022686 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022687.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163739326 163824807 - MGP_C3HHeJ_P0022687 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022688.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163739376 163803945 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022689.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163750050 163764155 - Rabgap1l protein_coding retained_intron MGP_C3HHeJ_T0022690.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163764138 163766922 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022691.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163772733 163826639 - MGP_C3HHeJ_P0022691 Rabgap1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022692.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163773094 163971371 - MGP_C3HHeJ_P0022692 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022693.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163773366 164344912 - MGP_C3HHeJ_P0022693 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022694.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163800489 163804132 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022695.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163805211 163810831 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022696.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163806923 163825245 - Rabgap1l protein_coding processed_transcript MGP_C3HHeJ_T0022697.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 163971103 163986051 - Rabgap1l protein_coding retained_intron MGP_C3HHeJ_T0022698.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 164219432 164344904 - MGP_C3HHeJ_P0022698 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0022699.1 MGP_C3HHeJ_G0016409.1 mouse_genomes_project 1 164283960 164345176 - MGP_C3HHeJ_P0022699 Rabgap1l protein_coding protein_coding MGP_C3HHeJ_T0019469.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50689818 50704629 - MGP_C3HHeJ_P0019469 Nabp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019470.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50689963 50704296 - MGP_C3HHeJ_P0019470 Nabp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019471.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50693814 50704629 - MGP_C3HHeJ_P0019471 Nabp1 protein_coding protein_coding MGP_C3HHeJ_T0019472.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50695202 50704144 - MGP_C3HHeJ_P0019472 Nabp1 protein_coding protein_coding MGP_C3HHeJ_T0019473.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50695296 50697355 - Nabp1 protein_coding retained_intron MGP_C3HHeJ_T0019474.1 MGP_C3HHeJ_G0015774.1 mouse_genomes_project 1 50701820 50704629 - Nabp1 protein_coding retained_intron MGP_C3HHeJ_T0019552.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52157695 52197986 - MGP_C3HHeJ_P0019552 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019553.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52157695 52188074 - MGP_C3HHeJ_P0019553 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019554.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52157695 52187568 - MGP_C3HHeJ_P0019554 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019555.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52160646 52251381 - MGP_C3HHeJ_P0019555 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019556.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52160651 52206760 - MGP_C3HHeJ_P0019556 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0019557.1 MGP_C3HHeJ_G0015784.1 mouse_genomes_project 1 52160661 52225769 - MGP_C3HHeJ_P0019557 1700019D03Rik protein_coding protein_coding MGP_C3HHeJ_T0011934.1 MGP_C3HHeJ_G0010038.1 mouse_genomes_project 1 51738403 51739399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098679.1 MGP_C3HHeJ_G0036873.1 mouse_genomes_project 1 185832382 185832490 + Gm24836 snRNA snRNA MGP_C3HHeJ_T0012195.1 MGP_C3HHeJ_G0010299.1 mouse_genomes_project 1 159207732 159207991 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009480.1 MGP_C3HHeJ_G0007613.1 mouse_genomes_project 1 200539453 200539534 + Mir29b-2 miRNA miRNA MGP_C3HHeJ_T0019941.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62806872 62950525 - MGP_C3HHeJ_P0019941 Ino80d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019942.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62915219 62972672 - MGP_C3HHeJ_P0019942 Ino80d protein_coding protein_coding MGP_C3HHeJ_T0019943.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62917371 62920798 - Ino80d protein_coding retained_intron MGP_C3HHeJ_T0019944.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62919386 62972964 - MGP_C3HHeJ_P0019944 Ino80d protein_coding protein_coding MGP_C3HHeJ_T0019945.1 MGP_C3HHeJ_G0015854.1 mouse_genomes_project 1 62919400 62972885 - MGP_C3HHeJ_P0019945 Ino80d protein_coding protein_coding MGP_C3HHeJ_T0099866.1 MGP_C3HHeJ_G0038060.1 mouse_genomes_project 1 95832295 95832364 - Gm23389 snoRNA snoRNA MGP_C3HHeJ_T0000616.1 MGP_C3HHeJ_G0000562.1 mouse_genomes_project 1 140457955 140461682 - TEC TEC MGP_C3HHeJ_T0097961.1 MGP_C3HHeJ_G0036173.1 mouse_genomes_project 1 90560864 90560979 + Gm25180 rRNA rRNA MGP_C3HHeJ_T0005849.1 MGP_C3HHeJ_G0004896.1 mouse_genomes_project 1 140635863 140679269 - Gm26936 lincRNA lincRNA MGP_C3HHeJ_T0005850.1 MGP_C3HHeJ_G0004896.1 mouse_genomes_project 1 140673522 140679244 - Gm26936 lincRNA lincRNA MGP_C3HHeJ_T0022903.1 MGP_C3HHeJ_G0016452.1 mouse_genomes_project 1 168451325 168479307 + MGP_C3HHeJ_P0022903 Dpt protein_coding protein_coding MGP_C3HHeJ_T0022502.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158610425 158762022 - MGP_C3HHeJ_P0022502 Xpr1 protein_coding protein_coding MGP_C3HHeJ_T0022503.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158613704 158762100 - MGP_C3HHeJ_P0022503 Xpr1 protein_coding protein_coding MGP_C3HHeJ_T0022504.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158616905 158647696 - Xpr1 protein_coding retained_intron MGP_C3HHeJ_T0022505.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158617390 158762108 - MGP_C3HHeJ_P0022505 Xpr1 protein_coding protein_coding MGP_C3HHeJ_T0022506.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158624831 158627575 - Xpr1 protein_coding retained_intron MGP_C3HHeJ_T0022507.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158662711 158762088 - Xpr1 protein_coding retained_intron MGP_C3HHeJ_T0022508.1 MGP_C3HHeJ_G0016379.1 mouse_genomes_project 1 158722575 158725654 - Xpr1 protein_coding processed_transcript MGP_C3HHeJ_T0011811.1 MGP_C3HHeJ_G0009915.1 mouse_genomes_project 1 14834271 14834757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020346.1 MGP_C3HHeJ_G0015934.1 mouse_genomes_project 1 75221206 75225131 - MGP_C3HHeJ_P0020346 Fev protein_coding protein_coding MGP_C3HHeJ_T0020347.1 MGP_C3HHeJ_G0015934.1 mouse_genomes_project 1 75221703 75225034 - MGP_C3HHeJ_P0020347 Fev protein_coding protein_coding MGP_C3HHeJ_T0020348.1 MGP_C3HHeJ_G0015934.1 mouse_genomes_project 1 75222104 75224325 - Fev protein_coding retained_intron MGP_C3HHeJ_T0021385.1 MGP_C3HHeJ_G0016146.1 mouse_genomes_project 1 109013147 109019358 - MGP_C3HHeJ_P0021385 Serpinb3c protein_coding protein_coding MGP_C3HHeJ_T0098322.1 MGP_C3HHeJ_G0036533.1 mouse_genomes_project 1 92911251 92912722 + Gm29101 sense_intronic sense_intronic MGP_C3HHeJ_T0011827.1 MGP_C3HHeJ_G0009931.1 mouse_genomes_project 1 19613353 19613905 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021582.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129715566 129907117 - MGP_C3HHeJ_P0021582 Tmem163 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021583.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129715578 129907042 - MGP_C3HHeJ_P0021583 Tmem163 protein_coding protein_coding MGP_C3HHeJ_T0021584.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129719892 129908568 - MGP_C3HHeJ_P0021584 Tmem163 protein_coding protein_coding MGP_C3HHeJ_T0021585.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129720355 129730175 - Tmem163 protein_coding retained_intron MGP_C3HHeJ_T0021586.1 MGP_C3HHeJ_G0016189.1 mouse_genomes_project 1 129720539 129768957 - Tmem163 protein_coding processed_transcript MGP_C3HHeJ_T0023858.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192260685 192426955 - MGP_C3HHeJ_P0023858 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023859.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192264448 192426936 - MGP_C3HHeJ_P0023859 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023860.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192320009 192349786 - MGP_C3HHeJ_P0023860 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023861.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192324807 192426927 - MGP_C3HHeJ_P0023861 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023862.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192342173 192349976 - MGP_C3HHeJ_P0023862 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023863.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192342173 192426911 - MGP_C3HHeJ_P0023863 Spata17 protein_coding protein_coding MGP_C3HHeJ_T0023864.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192342180 192349963 - Spata17 protein_coding processed_transcript MGP_C3HHeJ_T0023865.1 MGP_C3HHeJ_G0016683.1 mouse_genomes_project 1 192399889 192426936 - Spata17 protein_coding processed_transcript MGP_C3HHeJ_T0000520.1 MGP_C3HHeJ_G0000467.1 mouse_genomes_project 1 87585165 87588625 + TEC TEC MGP_C3HHeJ_T0011932.1 MGP_C3HHeJ_G0010036.1 mouse_genomes_project 1 51166216 51168188 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000592.1 MGP_C3HHeJ_G0000539.1 mouse_genomes_project 1 132243305 132246177 + TEC TEC MGP_C3HHeJ_T0019282.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352096 38481390 + MGP_C3HHeJ_P0019282 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019283.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352096 38481390 + MGP_C3HHeJ_P0019283 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019284.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352353 38353640 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019285.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352353 38443741 + MGP_C3HHeJ_P0019285 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019286.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352362 38479838 + MGP_C3HHeJ_P0019286 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019287.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352362 38479838 + MGP_C3HHeJ_P0019287 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019288.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352363 38479838 + MGP_C3HHeJ_P0019288 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019289.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352407 38480053 + MGP_C3HHeJ_P0019289 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019290.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38352413 38480009 + MGP_C3HHeJ_P0019290 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019291.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38416876 38436718 + Map4k4 protein_coding processed_transcript MGP_C3HHeJ_T0019292.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38417571 38430358 + Map4k4 protein_coding processed_transcript MGP_C3HHeJ_T0019293.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38453251 38454218 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019294.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38453549 38460402 + MGP_C3HHeJ_P0019294 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019295.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38453550 38458569 + MGP_C3HHeJ_P0019295 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019296.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38454333 38464351 + MGP_C3HHeJ_P0019296 Map4k4 protein_coding protein_coding MGP_C3HHeJ_T0019297.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38461052 38463025 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019298.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38467615 38468462 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0019299.1 MGP_C3HHeJ_G0015734.1 mouse_genomes_project 1 38478265 38479509 + Map4k4 protein_coding retained_intron MGP_C3HHeJ_T0023665.1 MGP_C3HHeJ_G0016640.1 mouse_genomes_project 1 185947058 185950417 + MGP_C3HHeJ_P0023665 Lefty1 protein_coding protein_coding MGP_C3HHeJ_T0023666.1 MGP_C3HHeJ_G0016640.1 mouse_genomes_project 1 185948887 185949827 + Lefty1 protein_coding retained_intron MGP_C3HHeJ_T0023269.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207250 176246509 + MGP_C3HHeJ_P0023269 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023270.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207272 176235687 + MGP_C3HHeJ_P0023270 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023271.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207417 176208414 + Slamf6 protein_coding retained_intron MGP_C3HHeJ_T0023272.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176207443 176239883 + MGP_C3HHeJ_P0023272 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023273.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176209225 176226023 + MGP_C3HHeJ_P0023273 Slamf6 protein_coding protein_coding MGP_C3HHeJ_T0023274.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176223440 176226360 + Slamf6 protein_coding retained_intron MGP_C3HHeJ_T0023275.1 MGP_C3HHeJ_G0016537.1 mouse_genomes_project 1 176234403 176240678 + Slamf6 protein_coding processed_transcript MGP_C3HHeJ_T0012124.1 MGP_C3HHeJ_G0010228.1 mouse_genomes_project 1 124907386 124907763 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002750.1 MGP_C3HHeJ_G0002612.1 mouse_genomes_project 1 59292666 59295085 - 1700122D07Rik antisense antisense MGP_C3HHeJ_T0020566.1 MGP_C3HHeJ_G0015965.1 mouse_genomes_project 1 78489074 78586139 - MGP_C3HHeJ_P0020566 Pax3 protein_coding protein_coding MGP_C3HHeJ_T0020567.1 MGP_C3HHeJ_G0015965.1 mouse_genomes_project 1 78489077 78586435 - MGP_C3HHeJ_P0020567 Pax3 protein_coding protein_coding MGP_C3HHeJ_T0020568.1 MGP_C3HHeJ_G0015965.1 mouse_genomes_project 1 78572355 78586414 - Pax3 protein_coding processed_transcript MGP_C3HHeJ_T0022853.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167547678 167573277 + MGP_C3HHeJ_P0022853 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022854.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167548339 167573701 + MGP_C3HHeJ_P0022854 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022855.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167548364 167573685 + MGP_C3HHeJ_P0022855 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022856.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167548379 167573684 + MGP_C3HHeJ_P0022856 Scyl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022857.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167559689 167573689 + MGP_C3HHeJ_P0022857 Scyl3 protein_coding protein_coding MGP_C3HHeJ_T0022858.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167562345 167563419 + Scyl3 protein_coding processed_transcript MGP_C3HHeJ_T0022860.1 MGP_C3HHeJ_G0016440.1 mouse_genomes_project 1 167569787 167572377 + Scyl3 protein_coding retained_intron MGP_C3HHeJ_T0011957.1 MGP_C3HHeJ_G0010061.1 mouse_genomes_project 1 58892897 58894280 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023090.1 MGP_C3HHeJ_G0016497.1 mouse_genomes_project 1 174560647 174740964 - MGP_C3HHeJ_P0023090 Atf6 protein_coding protein_coding MGP_C3HHeJ_T0023091.1 MGP_C3HHeJ_G0016497.1 mouse_genomes_project 1 174654352 174656450 - Atf6 protein_coding retained_intron MGP_C3HHeJ_T0022681.1 MGP_C3HHeJ_G0016408.1 mouse_genomes_project 1 163713922 163725576 - MGP_C3HHeJ_P0022681 Cacybp protein_coding protein_coding MGP_C3HHeJ_T0022682.1 MGP_C3HHeJ_G0016408.1 mouse_genomes_project 1 163718819 163725506 - MGP_C3HHeJ_P0022682 Cacybp protein_coding protein_coding MGP_C3HHeJ_T0022683.1 MGP_C3HHeJ_G0016408.1 mouse_genomes_project 1 163720788 163725427 - Cacybp protein_coding retained_intron MGP_C3HHeJ_T0012167.1 MGP_C3HHeJ_G0010271.1 mouse_genomes_project 1 148107691 148108684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000405.1 MGP_C3HHeJ_G0000352.1 mouse_genomes_project 1 31828685 31830999 - TEC TEC MGP_C3HHeJ_T0023752.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903296 187997646 + MGP_C3HHeJ_P0023752 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023753.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903448 188037089 + MGP_C3HHeJ_P0023753 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023754.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903831 187976023 + MGP_C3HHeJ_P0023754 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023755.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187903992 187976049 + MGP_C3HHeJ_P0023755 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0023756.1 MGP_C3HHeJ_G0016659.1 mouse_genomes_project 1 187904331 188038448 + MGP_C3HHeJ_P0023756 Susd4 protein_coding protein_coding MGP_C3HHeJ_T0019330.1 MGP_C3HHeJ_G0015742.1 mouse_genomes_project 1 39159344 39251816 + MGP_C3HHeJ_P0019330 Slc9a2 protein_coding protein_coding MGP_C3HHeJ_T0019331.1 MGP_C3HHeJ_G0015742.1 mouse_genomes_project 1 39160367 39206355 + MGP_C3HHeJ_P0019331 Slc9a2 protein_coding protein_coding MGP_C3HHeJ_T0019332.1 MGP_C3HHeJ_G0015742.1 mouse_genomes_project 1 39237091 39238404 + Slc9a2 protein_coding retained_intron MGP_C3HHeJ_T0005794.1 MGP_C3HHeJ_G0004851.1 mouse_genomes_project 1 113250494 113311980 - Gm29088 lincRNA lincRNA MGP_C3HHeJ_T0020241.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74596801 74612350 - MGP_C3HHeJ_P0020241 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020242.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74596806 74612836 - protein_coding retained_intron MGP_C3HHeJ_T0020243.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74596806 74604202 - protein_coding retained_intron MGP_C3HHeJ_T0020244.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74597855 74599770 - MGP_C3HHeJ_P0020244 protein_coding protein_coding MGP_C3HHeJ_T0020245.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74602104 74612700 - protein_coding processed_transcript MGP_C3HHeJ_T0020246.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74602452 74614108 - MGP_C3HHeJ_P0020246 protein_coding protein_coding MGP_C3HHeJ_T0020247.1 MGP_C3HHeJ_G0015916.1 mouse_genomes_project 1 74602469 74612605 - MGP_C3HHeJ_P0020247 protein_coding protein_coding MGP_C3HHeJ_T0012028.1 MGP_C3HHeJ_G0010132.1 mouse_genomes_project 1 83719836 83722120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005768.1 MGP_C3HHeJ_G0004831.1 mouse_genomes_project 1 93867227 93870197 - Gm29483 lincRNA lincRNA MGP_C3HHeJ_T0011765.1 MGP_C3HHeJ_G0009869.1 mouse_genomes_project 1 4026328 4026977 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098663.1 MGP_C3HHeJ_G0036857.1 mouse_genomes_project 1 155039548 155039681 - Gm25279 snRNA snRNA MGP_C3HHeJ_T0019434.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44072479 44207510 - MGP_C3HHeJ_P0019434 Col5a2 protein_coding protein_coding MGP_C3HHeJ_T0019435.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44089100 44093696 - Col5a2 protein_coding retained_intron MGP_C3HHeJ_T0019436.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44114492 44207510 - Col5a2 protein_coding retained_intron MGP_C3HHeJ_T0019437.1 MGP_C3HHeJ_G0015764.1 mouse_genomes_project 1 44117783 44122717 - Col5a2 protein_coding retained_intron MGP_C3HHeJ_T0022840.1 MGP_C3HHeJ_G0016435.1 mouse_genomes_project 1 166618771 166683762 - MGP_C3HHeJ_P0022840 Mroh9 protein_coding protein_coding MGP_C3HHeJ_T0023820.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190358449 190452537 + MGP_C3HHeJ_P0023820 Rab3gap2 protein_coding protein_coding MGP_C3HHeJ_T0023821.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190358449 190449963 + MGP_C3HHeJ_P0023821 Rab3gap2 protein_coding protein_coding MGP_C3HHeJ_T0023822.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190358510 190360785 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0023823.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190427252 190452522 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0023824.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190427415 190450501 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0023825.1 MGP_C3HHeJ_G0016674.1 mouse_genomes_project 1 190443572 190447473 + Rab3gap2 protein_coding retained_intron MGP_C3HHeJ_T0018555.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3600146 3972337 + MGP_C3HHeJ_P0018555 St18 protein_coding protein_coding MGP_C3HHeJ_T0018556.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3600246 3972343 + MGP_C3HHeJ_P0018556 St18 protein_coding protein_coding MGP_C3HHeJ_T0018557.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838199 3972343 + MGP_C3HHeJ_P0018557 St18 protein_coding protein_coding MGP_C3HHeJ_T0018558.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838201 3905181 + MGP_C3HHeJ_P0018558 St18 protein_coding protein_coding MGP_C3HHeJ_T0018559.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838218 3905306 + MGP_C3HHeJ_P0018559 St18 protein_coding protein_coding MGP_C3HHeJ_T0018560.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838249 3970876 + MGP_C3HHeJ_P0018560 St18 protein_coding protein_coding MGP_C3HHeJ_T0018561.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3838250 3970219 + MGP_C3HHeJ_P0018561 St18 protein_coding protein_coding MGP_C3HHeJ_T0018562.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3843027 3912850 + MGP_C3HHeJ_P0018562 St18 protein_coding protein_coding MGP_C3HHeJ_T0018563.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3845733 3972343 + MGP_C3HHeJ_P0018563 St18 protein_coding protein_coding MGP_C3HHeJ_T0018564.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3912952 3919607 + MGP_C3HHeJ_P0018564 St18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018565.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3927597 3944375 + St18 protein_coding processed_transcript MGP_C3HHeJ_T0018566.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3938678 3960364 + St18 protein_coding processed_transcript MGP_C3HHeJ_T0018567.1 MGP_C3HHeJ_G0015592.1 mouse_genomes_project 1 3968747 3971010 + MGP_C3HHeJ_P0018567 St18 protein_coding protein_coding MGP_C3HHeJ_T0000558.1 MGP_C3HHeJ_G0000505.1 mouse_genomes_project 1 113706398 113706913 + TEC TEC MGP_C3HHeJ_T0101587.1 MGP_C3HHeJ_G0039553.1 mouse_genomes_project 1 142787081 142841454 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012200.1 MGP_C3HHeJ_G0010304.1 mouse_genomes_project 1 161002449 161003054 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020278.1 MGP_C3HHeJ_G0015922.1 mouse_genomes_project 1 74830195 74855524 + MGP_C3HHeJ_P0020278 Cnot9 protein_coding protein_coding MGP_C3HHeJ_T0020279.1 MGP_C3HHeJ_G0015922.1 mouse_genomes_project 1 74830197 74851773 + Cnot9 protein_coding processed_transcript MGP_C3HHeJ_T0020280.1 MGP_C3HHeJ_G0015922.1 mouse_genomes_project 1 74848212 74852859 + Cnot9 protein_coding retained_intron MGP_C3HHeJ_T0098569.1 MGP_C3HHeJ_G0036767.1 mouse_genomes_project 1 194489509 194490166 - 2900042K21Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0019995.1 MGP_C3HHeJ_G0015864.1 mouse_genomes_project 1 63948164 64040768 - MGP_C3HHeJ_P0019995 Klf7 protein_coding protein_coding MGP_C3HHeJ_T0019996.1 MGP_C3HHeJ_G0015864.1 mouse_genomes_project 1 63960589 64040759 - MGP_C3HHeJ_P0019996 Klf7 protein_coding protein_coding MGP_C3HHeJ_T0019997.1 MGP_C3HHeJ_G0015864.1 mouse_genomes_project 1 63998471 64041560 - MGP_C3HHeJ_P0019997 Klf7 protein_coding protein_coding MGP_C3HHeJ_T0019970.1 MGP_C3HHeJ_G0015858.1 mouse_genomes_project 1 63136012 63188253 + MGP_C3HHeJ_P0019970 Zdbf2 protein_coding protein_coding MGP_C3HHeJ_T0019971.1 MGP_C3HHeJ_G0015858.1 mouse_genomes_project 1 63136016 63167861 + MGP_C3HHeJ_P0019971 Zdbf2 protein_coding protein_coding MGP_C3HHeJ_T0019972.1 MGP_C3HHeJ_G0015858.1 mouse_genomes_project 1 63163458 63188252 + MGP_C3HHeJ_P0019972 Zdbf2 protein_coding protein_coding MGP_C3HHeJ_T0000345.1 MGP_C3HHeJ_G0000295.1 mouse_genomes_project 1 8568764 8571235 + TEC TEC MGP_C3HHeJ_T0000436.1 MGP_C3HHeJ_G0000383.1 mouse_genomes_project 1 46707515 46708421 + TEC TEC MGP_C3HHeJ_T0000548.1 MGP_C3HHeJ_G0000495.1 mouse_genomes_project 1 106390877 106393892 + TEC TEC MGP_C3HHeJ_T0000339.1 MGP_C3HHeJ_G0000289.1 mouse_genomes_project 1 6393537 6396802 + TEC TEC MGP_C3HHeJ_T0019864.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59773644 59782082 - Ica1l protein_coding processed_transcript MGP_C3HHeJ_T0019865.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59780222 59837385 - MGP_C3HHeJ_P0019865 Ica1l protein_coding protein_coding MGP_C3HHeJ_T0019866.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59780229 59837420 - MGP_C3HHeJ_P0019866 Ica1l protein_coding protein_coding MGP_C3HHeJ_T0019867.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59782278 59819621 - MGP_C3HHeJ_P0019867 Ica1l protein_coding protein_coding MGP_C3HHeJ_T0019868.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59806098 59814007 - Ica1l protein_coding retained_intron MGP_C3HHeJ_T0019869.1 MGP_C3HHeJ_G0015842.1 mouse_genomes_project 1 59811634 59837482 - Ica1l protein_coding processed_transcript MGP_C3HHeJ_T0011911.1 MGP_C3HHeJ_G0010015.1 mouse_genomes_project 1 44709102 44709567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005971.1 MGP_C3HHeJ_G0004990.1 mouse_genomes_project 1 192141172 192144352 + 1700023G09Rik lincRNA lincRNA MGP_C3HHeJ_T0005972.1 MGP_C3HHeJ_G0004990.1 mouse_genomes_project 1 192141201 192143566 + 1700023G09Rik lincRNA lincRNA MGP_C3HHeJ_T0000496.1 MGP_C3HHeJ_G0000443.1 mouse_genomes_project 1 80198768 80200593 + TEC TEC MGP_C3HHeJ_T0000390.1 MGP_C3HHeJ_G0000338.1 mouse_genomes_project 1 23486559 23489869 - TEC TEC MGP_C3HHeJ_T0012245.1 MGP_C3HHeJ_G0010349.1 mouse_genomes_project 1 185880490 185880939 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099871.1 MGP_C3HHeJ_G0038065.1 mouse_genomes_project 1 103937218 103937317 - Gm23036 snoRNA snoRNA MGP_C3HHeJ_T0011965.1 MGP_C3HHeJ_G0010069.1 mouse_genomes_project 1 60596875 60598218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098629.1 MGP_C3HHeJ_G0036823.1 mouse_genomes_project 1 72482100 72482291 + Gm25939 snRNA snRNA MGP_C3HHeJ_T0011851.1 MGP_C3HHeJ_G0009955.1 mouse_genomes_project 1 28862116 28862481 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101102.1 MGP_C3HHeJ_G0039284.1 mouse_genomes_project 1 188307747 188309122 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101103.1 MGP_C3HHeJ_G0039284.1 mouse_genomes_project 1 188308114 188308890 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0022329.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153692899 154141893 - MGP_C3HHeJ_P0022329 Hmcn1 protein_coding protein_coding MGP_C3HHeJ_T0022330.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153693902 154141893 - MGP_C3HHeJ_P0022330 Hmcn1 protein_coding protein_coding MGP_C3HHeJ_T0022331.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153694059 153714039 - MGP_C3HHeJ_P0022331 Hmcn1 protein_coding protein_coding MGP_C3HHeJ_T0022332.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153694086 153695980 - Hmcn1 protein_coding retained_intron MGP_C3HHeJ_T0022333.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 153708261 153711442 - Hmcn1 protein_coding processed_transcript MGP_C3HHeJ_T0022334.1 MGP_C3HHeJ_G0016345.1 mouse_genomes_project 1 154015163 154142277 - Hmcn1 protein_coding retained_intron MGP_C3HHeJ_T0000612.1 MGP_C3HHeJ_G0000558.1 mouse_genomes_project 1 138496505 138499201 - TEC TEC MGP_C3HHeJ_T0000780.1 MGP_C3HHeJ_G0000722.1 mouse_genomes_project 1 200582192 200584432 - TEC TEC MGP_C3HHeJ_T0099878.1 MGP_C3HHeJ_G0038072.1 mouse_genomes_project 1 115618121 115618255 - Gm24937 snoRNA snoRNA MGP_C3HHeJ_T0098680.1 MGP_C3HHeJ_G0036874.1 mouse_genomes_project 1 186889887 186889981 - Gm23690 snRNA snRNA MGP_C3HHeJ_T0023369.1 MGP_C3HHeJ_G0016556.1 mouse_genomes_project 1 176873363 176883608 + MGP_C3HHeJ_P0023369 Vsig8 protein_coding protein_coding MGP_C3HHeJ_T0023370.1 MGP_C3HHeJ_G0016556.1 mouse_genomes_project 1 176878929 176883607 + MGP_C3HHeJ_P0023370 Vsig8 protein_coding protein_coding MGP_C3HHeJ_T0009472.1 MGP_C3HHeJ_G0007605.1 mouse_genomes_project 1 189954813 189954895 - Mir1981 miRNA miRNA MGP_C3HHeJ_T0000626.1 MGP_C3HHeJ_G0000571.1 mouse_genomes_project 1 140987524 140987945 + TEC TEC MGP_C3HHeJ_T0000671.1 MGP_C3HHeJ_G0000616.1 mouse_genomes_project 1 161348407 161561190 + TEC TEC MGP_C3HHeJ_T0000501.1 MGP_C3HHeJ_G0000448.1 mouse_genomes_project 1 81137768 81141316 - TEC TEC MGP_C3HHeJ_T0000679.1 MGP_C3HHeJ_G0000624.1 mouse_genomes_project 1 163832813 163833959 - TEC TEC MGP_C3HHeJ_T0005618.1 MGP_C3HHeJ_G0004720.1 mouse_genomes_project 1 39669894 39683555 - 4930448I06Rik lincRNA lincRNA MGP_C3HHeJ_T0005974.1 MGP_C3HHeJ_G0004992.1 mouse_genomes_project 1 193495334 193507345 + Gm38064 lincRNA lincRNA MGP_C3HHeJ_T0000486.1 MGP_C3HHeJ_G0000433.1 mouse_genomes_project 1 73495055 73497565 - TEC TEC MGP_C3HHeJ_T0012014.1 MGP_C3HHeJ_G0010118.1 mouse_genomes_project 1 77921606 77921898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012272.1 MGP_C3HHeJ_G0010376.1 mouse_genomes_project 1 198299607 198300039 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098315.1 MGP_C3HHeJ_G0036527.1 mouse_genomes_project 1 69244745 69259615 - Gm16076 sense_intronic sense_intronic MGP_C3HHeJ_T0002834.1 MGP_C3HHeJ_G0002673.1 mouse_genomes_project 1 138721936 138725182 - Gm37759 antisense antisense MGP_C3HHeJ_T0023376.1 MGP_C3HHeJ_G0016559.1 mouse_genomes_project 1 176959571 176961771 - MGP_C3HHeJ_P0023376 Dusp23 protein_coding protein_coding MGP_C3HHeJ_T0005579.1 MGP_C3HHeJ_G0004686.1 mouse_genomes_project 1 14051490 14056226 + D030040B21Rik lincRNA lincRNA MGP_C3HHeJ_T0005759.1 MGP_C3HHeJ_G0004822.1 mouse_genomes_project 1 91709950 91714585 + Gm9991 lincRNA lincRNA MGP_C3HHeJ_T0002706.1 MGP_C3HHeJ_G0002577.1 mouse_genomes_project 1 29160877 29174945 + Gm29128 antisense antisense MGP_C3HHeJ_T0000465.1 MGP_C3HHeJ_G0000412.1 mouse_genomes_project 1 62088630 62091148 + TEC TEC MGP_C3HHeJ_T0012021.1 MGP_C3HHeJ_G0010125.1 mouse_genomes_project 1 82247730 82249982 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005738.1 MGP_C3HHeJ_G0004803.1 mouse_genomes_project 1 83598780 83599737 - Krtap28-10 lincRNA lincRNA MGP_C3HHeJ_T0020437.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75499330 75504397 - MGP_C3HHeJ_P0020437 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020438.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75500074 75503727 - MGP_C3HHeJ_P0020438 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020439.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75500714 75502537 - MGP_C3HHeJ_P0020439 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020440.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501058 75502517 - MGP_C3HHeJ_P0020440 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020441.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501537 75504346 - Tuba4a protein_coding retained_intron MGP_C3HHeJ_T0020442.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501959 75504968 - MGP_C3HHeJ_P0020442 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020443.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75501991 75503991 - MGP_C3HHeJ_P0020443 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0020444.1 MGP_C3HHeJ_G0015948.1 mouse_genomes_project 1 75502015 75503991 - MGP_C3HHeJ_P0020444 Tuba4a protein_coding protein_coding MGP_C3HHeJ_T0000725.1 MGP_C3HHeJ_G0000670.1 mouse_genomes_project 1 181772614 181773907 - TEC TEC MGP_C3HHeJ_T0002876.1 MGP_C3HHeJ_G0002706.1 mouse_genomes_project 1 170026765 170029609 - 5330438I03Rik antisense antisense MGP_C3HHeJ_T0009424.1 MGP_C3HHeJ_G0007557.1 mouse_genomes_project 1 86430722 86430849 + Mir8096 miRNA miRNA MGP_C3HHeJ_T0000334.1 MGP_C3HHeJ_G0000284.1 mouse_genomes_project 1 3972639 3975548 - TEC TEC MGP_C3HHeJ_T0000536.1 MGP_C3HHeJ_G0000483.1 mouse_genomes_project 1 93010294 93013590 + TEC TEC MGP_C3HHeJ_T0101558.1 MGP_C3HHeJ_G0039524.1 mouse_genomes_project 1 87868843 87871814 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023340.1 MGP_C3HHeJ_G0016550.1 mouse_genomes_project 1 176645169 176678182 + MGP_C3HHeJ_P0023340 Kcnj10 protein_coding protein_coding MGP_C3HHeJ_T0000473.1 MGP_C3HHeJ_G0000420.1 mouse_genomes_project 1 66785390 66786529 - TEC TEC MGP_C3HHeJ_T0012079.1 MGP_C3HHeJ_G0010183.1 mouse_genomes_project 1 107757556 107758504 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000367.1 MGP_C3HHeJ_G0000317.1 mouse_genomes_project 1 18998921 19001248 - TEC TEC MGP_C3HHeJ_T0021878.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135787421 135808143 + MGP_C3HHeJ_P0021878 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021879.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135787421 135807936 + MGP_C3HHeJ_P0021879 protein_coding protein_coding MGP_C3HHeJ_T0021881.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135800145 135808143 + MGP_C3HHeJ_P0021881 protein_coding protein_coding MGP_C3HHeJ_T0021883.1 MGP_C3HHeJ_G0016253.1 mouse_genomes_project 1 135805453 135807964 + MGP_C3HHeJ_P0021883 protein_coding protein_coding MGP_C3HHeJ_T0005594.1 MGP_C3HHeJ_G0004700.1 mouse_genomes_project 1 25715807 25736941 + Gm5524 lincRNA lincRNA MGP_C3HHeJ_T0011782.1 MGP_C3HHeJ_G0009886.1 mouse_genomes_project 1 6065289 6068313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099841.1 MGP_C3HHeJ_G0038035.1 mouse_genomes_project 1 41477985 41478119 - Gm23126 snoRNA snoRNA MGP_C3HHeJ_T0000702.1 MGP_C3HHeJ_G0000647.1 mouse_genomes_project 1 169273389 169274198 + TEC TEC MGP_C3HHeJ_T0021153.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94094781 94109391 + MGP_C3HHeJ_P0021153 Capn10 protein_coding protein_coding MGP_C3HHeJ_T0021154.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94095171 94102436 + MGP_C3HHeJ_P0021154 Capn10 protein_coding protein_coding MGP_C3HHeJ_T0021155.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94095238 94109379 + MGP_C3HHeJ_P0021155 Capn10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021156.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94101922 94106553 + MGP_C3HHeJ_P0021156 Capn10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021157.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94104153 94105194 + Capn10 protein_coding retained_intron MGP_C3HHeJ_T0021158.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94108002 94108405 + Capn10 protein_coding processed_transcript MGP_C3HHeJ_T0021159.1 MGP_C3HHeJ_G0016096.1 mouse_genomes_project 1 94108334 94109040 + Capn10 protein_coding retained_intron MGP_C3HHeJ_T0009453.1 MGP_C3HHeJ_G0007586.1 mouse_genomes_project 1 161932559 161932668 + Mir488 miRNA miRNA MGP_C3HHeJ_T0019897.1 MGP_C3HHeJ_G0015846.1 mouse_genomes_project 1 60165191 60194581 + Cyp20a1 protein_coding retained_intron MGP_C3HHeJ_T0019898.1 MGP_C3HHeJ_G0015846.1 mouse_genomes_project 1 60165191 60209914 + MGP_C3HHeJ_P0019898 Cyp20a1 protein_coding protein_coding MGP_C3HHeJ_T0019899.1 MGP_C3HHeJ_G0015846.1 mouse_genomes_project 1 60165191 60209914 + MGP_C3HHeJ_P0019899 Cyp20a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000360.1 MGP_C3HHeJ_G0000310.1 mouse_genomes_project 1 13203805 13206974 + TEC TEC MGP_C3HHeJ_T0005870.1 MGP_C3HHeJ_G0004913.1 mouse_genomes_project 1 157329670 157336609 - Gm28286 lincRNA lincRNA MGP_C3HHeJ_T0005587.1 MGP_C3HHeJ_G0004694.1 mouse_genomes_project 1 19538514 19541195 + Gm26580 lincRNA lincRNA MGP_C3HHeJ_T0000523.1 MGP_C3HHeJ_G0000470.1 mouse_genomes_project 1 87665380 87666951 + TEC TEC MGP_C3HHeJ_T0016867.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200478591 200523949 + A330023F24Rik processed_transcript lincRNA MGP_C3HHeJ_T0016868.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200478601 200529836 + A330023F24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016869.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200519843 200539343 + A330023F24Rik processed_transcript lincRNA MGP_C3HHeJ_T0016870.1 MGP_C3HHeJ_G0014888.1 mouse_genomes_project 1 200526516 200540318 + A330023F24Rik processed_transcript retained_intron MGP_C3HHeJ_T0099834.1 MGP_C3HHeJ_G0038028.1 mouse_genomes_project 1 24278202 24278308 + Gm24064 snoRNA snoRNA MGP_C3HHeJ_T0021891.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135861815 135872731 - MGP_C3HHeJ_P0021891 Sox13 protein_coding protein_coding MGP_C3HHeJ_T0021892.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135861815 135903885 - MGP_C3HHeJ_P0021892 Sox13 protein_coding protein_coding MGP_C3HHeJ_T0021893.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135863163 135872783 - MGP_C3HHeJ_P0021893 Sox13 protein_coding protein_coding MGP_C3HHeJ_T0021894.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135863490 135865039 - Sox13 protein_coding retained_intron MGP_C3HHeJ_T0021895.1 MGP_C3HHeJ_G0016256.1 mouse_genomes_project 1 135864049 135865947 - Sox13 protein_coding retained_intron MGP_C3HHeJ_T0023525.1 MGP_C3HHeJ_G0016611.1 mouse_genomes_project 1 182392595 182417745 + MGP_C3HHeJ_P0023525 1700016C15Rik protein_coding protein_coding MGP_C3HHeJ_T0005658.1 MGP_C3HHeJ_G0004744.1 mouse_genomes_project 1 55456440 55502178 + 9130227L01Rik lincRNA lincRNA MGP_C3HHeJ_T0005659.1 MGP_C3HHeJ_G0004744.1 mouse_genomes_project 1 55490084 55502408 + 9130227L01Rik lincRNA lincRNA MGP_C3HHeJ_T0012117.1 MGP_C3HHeJ_G0010221.1 mouse_genomes_project 1 122012785 122013305 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012214.1 MGP_C3HHeJ_G0010318.1 mouse_genomes_project 1 168137254 168137570 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011920.1 MGP_C3HHeJ_G0010024.1 mouse_genomes_project 1 47886677 47887608 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019746.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060069 58079118 + MGP_C3HHeJ_P0019746 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019747.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060185 58099005 + MGP_C3HHeJ_P0019747 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019748.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060546 58065426 + MGP_C3HHeJ_P0019748 Nif3l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019749.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58060647 58062969 + MGP_C3HHeJ_P0019749 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019750.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58062549 58077928 + MGP_C3HHeJ_P0019750 Nif3l1 protein_coding protein_coding MGP_C3HHeJ_T0019751.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58064085 58073462 + Nif3l1 protein_coding retained_intron MGP_C3HHeJ_T0019752.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58068188 58070973 + Nif3l1 protein_coding retained_intron MGP_C3HHeJ_T0019753.1 MGP_C3HHeJ_G0015822.1 mouse_genomes_project 1 58073346 58077046 + Nif3l1 protein_coding retained_intron MGP_C3HHeJ_T0021494.1 MGP_C3HHeJ_G0016168.1 mouse_genomes_project 1 121935243 121940561 - MGP_C3HHeJ_P0021494 Tmem177 protein_coding protein_coding MGP_C3HHeJ_T0009466.1 MGP_C3HHeJ_G0007599.1 mouse_genomes_project 1 175919700 175919761 - Mir7683 miRNA miRNA MGP_C3HHeJ_T0016752.1 MGP_C3HHeJ_G0014850.1 mouse_genomes_project 1 32656983 32659408 - Gm28417 processed_transcript retained_intron MGP_C3HHeJ_T0016753.1 MGP_C3HHeJ_G0014850.1 mouse_genomes_project 1 32659128 32662073 - Gm28417 processed_transcript antisense MGP_C3HHeJ_T0016754.1 MGP_C3HHeJ_G0014850.1 mouse_genomes_project 1 32660481 32662037 - Gm28417 processed_transcript antisense MGP_C3HHeJ_T0005622.1 MGP_C3HHeJ_G0004723.1 mouse_genomes_project 1 40815528 40816911 + Gm9915 lincRNA lincRNA MGP_C3HHeJ_T0005623.1 MGP_C3HHeJ_G0004723.1 mouse_genomes_project 1 40815529 40816911 + Gm9915 lincRNA lincRNA MGP_C3HHeJ_T0020596.1 MGP_C3HHeJ_G0015973.1 mouse_genomes_project 1 80035950 80106220 - MGP_C3HHeJ_P0020596 Ap1s3 protein_coding protein_coding MGP_C3HHeJ_T0020597.1 MGP_C3HHeJ_G0015973.1 mouse_genomes_project 1 80038089 80106213 - MGP_C3HHeJ_P0020597 Ap1s3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020598.1 MGP_C3HHeJ_G0015973.1 mouse_genomes_project 1 80038430 80106216 - MGP_C3HHeJ_P0020598 Ap1s3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099900.1 MGP_C3HHeJ_G0038094.1 mouse_genomes_project 1 164589016 164589099 + Gm22357 snoRNA snoRNA MGP_C3HHeJ_T0101552.1 MGP_C3HHeJ_G0039518.1 mouse_genomes_project 1 65355298 65355570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097952.1 MGP_C3HHeJ_G0036164.1 mouse_genomes_project 1 24714145 24714264 - n-R5s209 rRNA rRNA MGP_C3HHeJ_T0011816.1 MGP_C3HHeJ_G0009920.1 mouse_genomes_project 1 16509220 16509332 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023044.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173286775 173322602 - MGP_C3HHeJ_P0023044 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023045.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173287154 173322566 - MGP_C3HHeJ_P0023045 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023046.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173296268 173312643 - MGP_C3HHeJ_P0023046 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023047.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173300732 173322549 - MGP_C3HHeJ_P0023047 Nuf2 protein_coding protein_coding MGP_C3HHeJ_T0023048.1 MGP_C3HHeJ_G0016484.1 mouse_genomes_project 1 173315282 173322556 - Nuf2 protein_coding retained_intron MGP_C3HHeJ_T0023533.1 MGP_C3HHeJ_G0016614.1 mouse_genomes_project 1 183193698 183196904 + Cox20 protein_coding retained_intron MGP_C3HHeJ_T0023534.1 MGP_C3HHeJ_G0016614.1 mouse_genomes_project 1 183193698 183197262 + MGP_C3HHeJ_P0023534 Cox20 protein_coding protein_coding MGP_C3HHeJ_T0020970.1 MGP_C3HHeJ_G0016055.1 mouse_genomes_project 1 90065208 90146092 + MGP_C3HHeJ_P0020970 Sh3bp4 protein_coding protein_coding MGP_C3HHeJ_T0020971.1 MGP_C3HHeJ_G0016055.1 mouse_genomes_project 1 90065246 90103902 + Sh3bp4 protein_coding processed_transcript MGP_C3HHeJ_T0021181.1 MGP_C3HHeJ_G0016101.1 mouse_genomes_project 1 94319946 94329563 - MGP_C3HHeJ_P0021181 2310007B03Rik protein_coding protein_coding MGP_C3HHeJ_T0021182.1 MGP_C3HHeJ_G0016101.1 mouse_genomes_project 1 94320180 94329485 - MGP_C3HHeJ_P0021182 2310007B03Rik protein_coding protein_coding MGP_C3HHeJ_T0002880.1 MGP_C3HHeJ_G0002710.1 mouse_genomes_project 1 173803162 173806160 + 3110045C21Rik antisense antisense MGP_C3HHeJ_T0002881.1 MGP_C3HHeJ_G0002710.1 mouse_genomes_project 1 173803205 173806134 + 3110045C21Rik antisense antisense MGP_C3HHeJ_T0020835.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88010076 88013717 + MGP_C3HHeJ_P0020835 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020836.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011226 88013716 + MGP_C3HHeJ_P0020836 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020837.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011227 88019140 + MGP_C3HHeJ_P0020837 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020838.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011301 88013716 + MGP_C3HHeJ_P0020838 Chrng protein_coding protein_coding MGP_C3HHeJ_T0020839.1 MGP_C3HHeJ_G0016026.1 mouse_genomes_project 1 88011490 88014016 + Chrng protein_coding retained_intron MGP_C3HHeJ_T0098667.1 MGP_C3HHeJ_G0036861.1 mouse_genomes_project 1 174613070 174613177 - Gm23523 snRNA snRNA MGP_C3HHeJ_T0002912.1 MGP_C3HHeJ_G0002736.1 mouse_genomes_project 1 192179911 192182987 - Gm37912 antisense antisense MGP_C3HHeJ_T0011755.1 MGP_C3HHeJ_G0009859.1 mouse_genomes_project 1 1753121 1754327 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000615.1 MGP_C3HHeJ_G0000561.1 mouse_genomes_project 1 140002604 140003013 - TEC TEC MGP_C3HHeJ_T0019304.1 MGP_C3HHeJ_G0015736.1 mouse_genomes_project 1 38680246 38775382 + MGP_C3HHeJ_P0019304 Il1r1 protein_coding protein_coding MGP_C3HHeJ_T0019305.1 MGP_C3HHeJ_G0015736.1 mouse_genomes_project 1 38724936 38774326 + MGP_C3HHeJ_P0019305 Il1r1 protein_coding protein_coding MGP_C3HHeJ_T0019306.1 MGP_C3HHeJ_G0015736.1 mouse_genomes_project 1 38725007 38735525 + Il1r1 protein_coding processed_transcript MGP_C3HHeJ_T0005614.1 MGP_C3HHeJ_G0004718.1 mouse_genomes_project 1 37447069 37456225 - Gm37821 lincRNA lincRNA MGP_C3HHeJ_T0000420.1 MGP_C3HHeJ_G0000367.1 mouse_genomes_project 1 36018715 36020635 + TEC TEC MGP_C3HHeJ_T0098662.1 MGP_C3HHeJ_G0036856.1 mouse_genomes_project 1 154430058 154430149 - Gm24402 snRNA snRNA MGP_C3HHeJ_T0023056.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173783266 173802995 - MGP_C3HHeJ_P0023056 Hsd17b7 protein_coding protein_coding MGP_C3HHeJ_T0023057.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173786585 173799478 - Hsd17b7 protein_coding processed_transcript MGP_C3HHeJ_T0023058.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173789209 173802995 - MGP_C3HHeJ_P0023058 Hsd17b7 protein_coding protein_coding MGP_C3HHeJ_T0023059.1 MGP_C3HHeJ_G0016488.1 mouse_genomes_project 1 173793137 173799905 - Hsd17b7 protein_coding processed_transcript MGP_C3HHeJ_T0005660.1 MGP_C3HHeJ_G0004745.1 mouse_genomes_project 1 55550536 55551762 + 1700003I22Rik lincRNA lincRNA MGP_C3HHeJ_T0005661.1 MGP_C3HHeJ_G0004745.1 mouse_genomes_project 1 55550581 55551696 + 1700003I22Rik lincRNA lincRNA MGP_C3HHeJ_T0011905.1 MGP_C3HHeJ_G0010009.1 mouse_genomes_project 1 44217592 44218116 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022567.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159750157 159801460 - MGP_C3HHeJ_P0022567 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0022568.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159755393 159794079 - MGP_C3HHeJ_P0022568 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0022569.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159756320 159758267 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022570.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159756571 159758713 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022571.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159766525 159801369 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022572.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159766951 159801425 - MGP_C3HHeJ_P0022572 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0022573.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159772736 159801326 - Soat1 protein_coding retained_intron MGP_C3HHeJ_T0022574.1 MGP_C3HHeJ_G0016390.1 mouse_genomes_project 1 159772969 159801393 - MGP_C3HHeJ_P0022574 Soat1 protein_coding protein_coding MGP_C3HHeJ_T0005932.1 MGP_C3HHeJ_G0004963.1 mouse_genomes_project 1 186090542 186093632 + Gm37406 lincRNA lincRNA MGP_C3HHeJ_T0000549.1 MGP_C3HHeJ_G0000496.1 mouse_genomes_project 1 106528576 106531534 + TEC TEC MGP_C3HHeJ_T0002683.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6858094 6906229 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002684.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6858402 6902703 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002685.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6858927 6883455 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002686.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6859033 6883294 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0002687.1 MGP_C3HHeJ_G0002563.1 mouse_genomes_project 1 6894869 6902549 + 1700034P13Rik antisense antisense MGP_C3HHeJ_T0098596.1 MGP_C3HHeJ_G0036790.1 mouse_genomes_project 1 6574278 6574381 + Gm24765 snRNA snRNA MGP_C3HHeJ_T0021140.1 MGP_C3HHeJ_G0016094.1 mouse_genomes_project 1 94067406 94068861 + MGP_C3HHeJ_P0021140 Dusp28 protein_coding protein_coding MGP_C3HHeJ_T0022645.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162134656 162393823 - MGP_C3HHeJ_P0022645 Pappa2 protein_coding protein_coding MGP_C3HHeJ_T0022646.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162188945 162239567 - MGP_C3HHeJ_P0022646 Pappa2 protein_coding protein_coding MGP_C3HHeJ_T0022647.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162239371 162272710 - Pappa2 protein_coding retained_intron MGP_C3HHeJ_T0022648.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162257394 162267288 - Pappa2 protein_coding processed_transcript MGP_C3HHeJ_T0022649.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162393531 162395804 - Pappa2 protein_coding processed_transcript MGP_C3HHeJ_T0022650.1 MGP_C3HHeJ_G0016402.1 mouse_genomes_project 1 162393582 162416173 - Pappa2 protein_coding processed_transcript MGP_C3HHeJ_T0020726.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86339059 86372891 + MGP_C3HHeJ_P0020726 Sp100 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020727.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86339059 86386457 + MGP_C3HHeJ_P0020727 Sp100 protein_coding protein_coding MGP_C3HHeJ_T0020728.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86346837 86359565 + Sp100 protein_coding processed_transcript MGP_C3HHeJ_T0020729.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86348729 86356212 + Sp100 protein_coding retained_intron MGP_C3HHeJ_T0020730.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86370461 86376194 + Sp100 protein_coding retained_intron MGP_C3HHeJ_T0020731.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86370819 86385917 + MGP_C3HHeJ_P0020731 Sp100 protein_coding protein_coding MGP_C3HHeJ_T0020732.1 MGP_C3HHeJ_G0015999.1 mouse_genomes_project 1 86379952 86384506 + MGP_C3HHeJ_P0020732 Sp100 protein_coding protein_coding MGP_C3HHeJ_T0005909.1 MGP_C3HHeJ_G0004942.1 mouse_genomes_project 1 169811007 169811168 + Gm37923 lincRNA lincRNA MGP_C3HHeJ_T0021167.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94176955 94272773 - MGP_C3HHeJ_P0021167 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021168.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179244 94272782 - MGP_C3HHeJ_P0021168 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021169.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179433 94272902 - MGP_C3HHeJ_P0021169 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021170.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179773 94272798 - MGP_C3HHeJ_P0021170 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021171.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94179950 94252246 - MGP_C3HHeJ_P0021171 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0021172.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94183814 94186202 - MGP_C3HHeJ_P0021172 Kif1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021173.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94184986 94188699 - Kif1a protein_coding retained_intron MGP_C3HHeJ_T0021174.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94200528 94272797 - Kif1a protein_coding processed_transcript MGP_C3HHeJ_T0021175.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94203983 94219953 - MGP_C3HHeJ_P0021175 Kif1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021176.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94235957 94238583 - Kif1a protein_coding processed_transcript MGP_C3HHeJ_T0021177.1 MGP_C3HHeJ_G0016099.1 mouse_genomes_project 1 94247548 94272785 - MGP_C3HHeJ_P0021177 Kif1a protein_coding protein_coding MGP_C3HHeJ_T0020111.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66987957 67026791 - MGP_C3HHeJ_P0020111 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020112.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66987957 67026784 - MGP_C3HHeJ_P0020112 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020113.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66990842 67026753 - MGP_C3HHeJ_P0020113 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020114.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66994467 67008592 - Lancl1 protein_coding processed_transcript MGP_C3HHeJ_T0020115.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 66997374 67026753 - MGP_C3HHeJ_P0020115 Lancl1 protein_coding protein_coding MGP_C3HHeJ_T0020116.1 MGP_C3HHeJ_G0015887.1 mouse_genomes_project 1 67007135 67009744 - Lancl1 protein_coding retained_intron MGP_C3HHeJ_T0005705.1 MGP_C3HHeJ_G0004780.1 mouse_genomes_project 1 72464135 72493210 + D230017M19Rik lincRNA lincRNA MGP_C3HHeJ_T0005706.1 MGP_C3HHeJ_G0004780.1 mouse_genomes_project 1 72471741 72502105 + D230017M19Rik lincRNA lincRNA MGP_C3HHeJ_T0005707.1 MGP_C3HHeJ_G0004780.1 mouse_genomes_project 1 72491778 72494248 + D230017M19Rik lincRNA lincRNA MGP_C3HHeJ_T0002729.1 MGP_C3HHeJ_G0002595.1 mouse_genomes_project 1 39170242 39176488 - Gm37623 antisense antisense MGP_C3HHeJ_T0022070.1 MGP_C3HHeJ_G0016295.1 mouse_genomes_project 1 138318279 138349301 + MGP_C3HHeJ_P0022070 Csrp1 protein_coding protein_coding MGP_C3HHeJ_T0022071.1 MGP_C3HHeJ_G0016295.1 mouse_genomes_project 1 138326592 138349301 + MGP_C3HHeJ_P0022071 Csrp1 protein_coding protein_coding MGP_C3HHeJ_T0019793.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58719419 + Stradb protein_coding retained_intron MGP_C3HHeJ_T0019794.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58725790 + Stradb protein_coding retained_intron MGP_C3HHeJ_T0019795.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58729455 + MGP_C3HHeJ_P0019795 Stradb protein_coding protein_coding MGP_C3HHeJ_T0019796.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58733659 + MGP_C3HHeJ_P0019796 Stradb protein_coding protein_coding MGP_C3HHeJ_T0019797.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58733066 + MGP_C3HHeJ_P0019797 Stradb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019798.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58709179 58732941 + MGP_C3HHeJ_P0019798 Stradb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019799.1 MGP_C3HHeJ_G0015830.1 mouse_genomes_project 1 58729000 58732303 + MGP_C3HHeJ_P0019799 Stradb protein_coding protein_coding MGP_C3HHeJ_T0022557.1 MGP_C3HHeJ_G0016388.1 mouse_genomes_project 1 159634274 159652256 + MGP_C3HHeJ_P0022557 Nphs2 protein_coding protein_coding MGP_C3HHeJ_T0022558.1 MGP_C3HHeJ_G0016388.1 mouse_genomes_project 1 159634590 159650652 + MGP_C3HHeJ_P0022558 Nphs2 protein_coding protein_coding MGP_C3HHeJ_T0098323.1 MGP_C3HHeJ_G0036534.1 mouse_genomes_project 1 107207635 107208088 - Gm28404 sense_intronic sense_intronic MGP_C3HHeJ_T0002743.1 MGP_C3HHeJ_G0002607.1 mouse_genomes_project 1 57860920 57930917 - Gm15759 antisense antisense MGP_C3HHeJ_T0021424.1 MGP_C3HHeJ_G0016159.1 mouse_genomes_project 1 120302070 120313995 + MGP_C3HHeJ_P0021424 Nifk protein_coding protein_coding MGP_C3HHeJ_T0021425.1 MGP_C3HHeJ_G0016159.1 mouse_genomes_project 1 120302085 120313114 + MGP_C3HHeJ_P0021425 Nifk protein_coding protein_coding MGP_C3HHeJ_T0021426.1 MGP_C3HHeJ_G0016159.1 mouse_genomes_project 1 120302384 120309553 + MGP_C3HHeJ_P0021426 Nifk protein_coding protein_coding MGP_C3HHeJ_T0005595.1 MGP_C3HHeJ_G0004701.1 mouse_genomes_project 1 28704619 28706023 - Gm9898 lincRNA lincRNA MGP_C3HHeJ_T0020369.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423379 75428509 + MGP_C3HHeJ_P0020369 Fam134a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020370.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423387 75428513 + MGP_C3HHeJ_P0020370 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020371.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423395 75428509 + MGP_C3HHeJ_P0020371 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020372.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423581 75425264 + MGP_C3HHeJ_P0020372 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020373.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423766 75428507 + MGP_C3HHeJ_P0020373 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020374.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423783 75424977 + MGP_C3HHeJ_P0020374 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0020375.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75423979 75424709 + Fam134a protein_coding retained_intron MGP_C3HHeJ_T0020376.1 MGP_C3HHeJ_G0015941.1 mouse_genomes_project 1 75425903 75426361 + MGP_C3HHeJ_P0020376 Fam134a protein_coding protein_coding MGP_C3HHeJ_T0023224.1 MGP_C3HHeJ_G0016523.1 mouse_genomes_project 1 175286166 175314076 + MGP_C3HHeJ_P0023224 Nectin4 protein_coding protein_coding MGP_C3HHeJ_T0023225.1 MGP_C3HHeJ_G0016523.1 mouse_genomes_project 1 175286419 175314387 + MGP_C3HHeJ_P0023225 Nectin4 protein_coding protein_coding MGP_C3HHeJ_T0023226.1 MGP_C3HHeJ_G0016523.1 mouse_genomes_project 1 175286422 175314074 + MGP_C3HHeJ_P0023226 Nectin4 protein_coding protein_coding MGP_C3HHeJ_T0020644.1 MGP_C3HHeJ_G0015984.1 mouse_genomes_project 1 82966463 83114992 - MGP_C3HHeJ_P0020644 Col4a4 protein_coding protein_coding MGP_C3HHeJ_T0020645.1 MGP_C3HHeJ_G0015984.1 mouse_genomes_project 1 83062803 83114935 - Col4a4 protein_coding retained_intron MGP_C3HHeJ_T0000450.1 MGP_C3HHeJ_G0000397.1 mouse_genomes_project 1 59200509 59202147 - TEC TEC MGP_C3HHeJ_T0005910.1 MGP_C3HHeJ_G0004943.1 mouse_genomes_project 1 170097525 170099554 - Gm15853 lincRNA lincRNA MGP_C3HHeJ_T0101593.1 MGP_C3HHeJ_G0039559.1 mouse_genomes_project 1 177427652 177427904 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005708.1 MGP_C3HHeJ_G0004781.1 mouse_genomes_project 1 73562314 73598871 + Gm29185 lincRNA lincRNA MGP_C3HHeJ_T0005692.1 MGP_C3HHeJ_G0004771.1 mouse_genomes_project 1 67851321 67867099 + Gm15669 lincRNA lincRNA MGP_C3HHeJ_T0023572.1 MGP_C3HHeJ_G0016624.1 mouse_genomes_project 1 184628111 184689923 - MGP_C3HHeJ_P0023572 Gm1305 protein_coding protein_coding MGP_C3HHeJ_T0000353.1 MGP_C3HHeJ_G0000303.1 mouse_genomes_project 1 10594744 10596995 - TEC TEC MGP_C3HHeJ_T0000342.1 MGP_C3HHeJ_G0000292.1 mouse_genomes_project 1 7339785 7341507 - TEC TEC MGP_C3HHeJ_T0000707.1 MGP_C3HHeJ_G0000652.1 mouse_genomes_project 1 172145434 172147710 - TEC TEC MGP_C3HHeJ_T0011773.1 MGP_C3HHeJ_G0009877.1 mouse_genomes_project 1 4568705 4569882 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020538.1 MGP_C3HHeJ_G0015961.1 mouse_genomes_project 1 75798165 75801455 + MGP_C3HHeJ_P0020538 Inha protein_coding protein_coding MGP_C3HHeJ_T0023435.1 MGP_C3HHeJ_G0016592.1 mouse_genomes_project 1 178976212 178977222 + MGP_C3HHeJ_P0023435 Olfr248 protein_coding protein_coding MGP_C3HHeJ_T0012202.1 MGP_C3HHeJ_G0010306.1 mouse_genomes_project 1 161018525 161018698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023803.1 MGP_C3HHeJ_G0016669.1 mouse_genomes_project 1 189857083 189862559 - MGP_C3HHeJ_P0023803 Hlx protein_coding protein_coding MGP_C3HHeJ_T0023804.1 MGP_C3HHeJ_G0016669.1 mouse_genomes_project 1 189857090 189861540 - MGP_C3HHeJ_P0023804 Hlx protein_coding protein_coding MGP_C3HHeJ_T0011147.1 MGP_C3HHeJ_G0009280.1 mouse_genomes_project 1 30838188 30838480 + Gm23024 misc_RNA misc_RNA MGP_C3HHeJ_T0020351.1 MGP_C3HHeJ_G0015936.1 mouse_genomes_project 1 75245176 75278579 - MGP_C3HHeJ_P0020351 Ccdc108 protein_coding protein_coding MGP_C3HHeJ_T0020352.1 MGP_C3HHeJ_G0015936.1 mouse_genomes_project 1 75265311 75278574 - Ccdc108 protein_coding retained_intron MGP_C3HHeJ_T0020353.1 MGP_C3HHeJ_G0015936.1 mouse_genomes_project 1 75266400 75278572 - Ccdc108 protein_coding retained_intron MGP_C3HHeJ_T0020292.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74892425 74915203 - MGP_C3HHeJ_P0020292 Zfp142 protein_coding protein_coding MGP_C3HHeJ_T0020293.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74893724 74915200 - MGP_C3HHeJ_P0020293 Zfp142 protein_coding protein_coding MGP_C3HHeJ_T0020294.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74893800 74915320 - MGP_C3HHeJ_P0020294 Zfp142 protein_coding protein_coding MGP_C3HHeJ_T0020295.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74893981 74915421 - MGP_C3HHeJ_P0020295 Zfp142 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020296.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74894167 74912848 - MGP_C3HHeJ_P0020296 Zfp142 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020297.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74909417 74915370 - Zfp142 protein_coding retained_intron MGP_C3HHeJ_T0020298.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74909424 74915127 - Zfp142 protein_coding retained_intron MGP_C3HHeJ_T0020299.1 MGP_C3HHeJ_G0015924.1 mouse_genomes_project 1 74912769 74915308 - Zfp142 protein_coding processed_transcript MGP_C3HHeJ_T0022372.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155036281 155280043 - MGP_C3HHeJ_P0022372 1700025G04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022373.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155069165 155280198 - MGP_C3HHeJ_P0022373 1700025G04Rik protein_coding protein_coding MGP_C3HHeJ_T0022374.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155077566 155106415 - 1700025G04Rik protein_coding retained_intron MGP_C3HHeJ_T0022375.1 MGP_C3HHeJ_G0016352.1 mouse_genomes_project 1 155077903 155245315 - MGP_C3HHeJ_P0022375 1700025G04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000620.1 MGP_C3HHeJ_G0000566.1 mouse_genomes_project 1 140634730 140637751 + TEC TEC MGP_C3HHeJ_T0000621.1 MGP_C3HHeJ_G0000566.1 mouse_genomes_project 1 140635649 140637751 + TEC TEC MGP_C3HHeJ_T0011949.1 MGP_C3HHeJ_G0010053.1 mouse_genomes_project 1 56881094 56882071 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098619.1 MGP_C3HHeJ_G0036813.1 mouse_genomes_project 1 63173409 63173513 - Gm23448 snRNA snRNA MGP_C3HHeJ_T0020559.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77721333 77865659 - MGP_C3HHeJ_P0020559 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0020560.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77721337 77865650 - MGP_C3HHeJ_P0020560 Epha4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020561.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77727273 77865659 - MGP_C3HHeJ_P0020561 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0020562.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77727752 77731752 - MGP_C3HHeJ_P0020562 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0020563.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77727770 77865650 - MGP_C3HHeJ_P0020563 Epha4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020564.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77752064 77865656 - Epha4 protein_coding retained_intron MGP_C3HHeJ_T0020565.1 MGP_C3HHeJ_G0015964.1 mouse_genomes_project 1 77756397 77865654 - MGP_C3HHeJ_P0020565 Epha4 protein_coding protein_coding MGP_C3HHeJ_T0022463.1 MGP_C3HHeJ_G0016371.1 mouse_genomes_project 1 157150451 157163495 + MGP_C3HHeJ_P0022463 protein_coding protein_coding MGP_C3HHeJ_T0020359.1 MGP_C3HHeJ_G0015939.1 mouse_genomes_project 1 75406140 75414495 - MGP_C3HHeJ_P0020359 Slc23a3 protein_coding protein_coding MGP_C3HHeJ_T0020360.1 MGP_C3HHeJ_G0015939.1 mouse_genomes_project 1 75412316 75414151 - Slc23a3 protein_coding retained_intron MGP_C3HHeJ_T0000781.1 MGP_C3HHeJ_G0000723.1 mouse_genomes_project 1 200750975 200753691 - TEC TEC MGP_C3HHeJ_T0019256.1 MGP_C3HHeJ_G0015725.1 mouse_genomes_project 1 37384968 37391859 + MGP_C3HHeJ_P0019256 Pdcl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019257.1 MGP_C3HHeJ_G0015725.1 mouse_genomes_project 1 37384971 37393585 + MGP_C3HHeJ_P0019257 Pdcl3 protein_coding protein_coding MGP_C3HHeJ_T0019258.1 MGP_C3HHeJ_G0015725.1 mouse_genomes_project 1 37392101 37393588 + Pdcl3 protein_coding retained_intron MGP_C3HHeJ_T0011146.1 MGP_C3HHeJ_G0009279.1 mouse_genomes_project 1 27216318 27216430 - Gm25586 misc_RNA misc_RNA MGP_C3HHeJ_T0012010.1 MGP_C3HHeJ_G0010114.1 mouse_genomes_project 1 75863859 75864351 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020392.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462220 75474093 - MGP_C3HHeJ_P0020392 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020393.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462225 75474363 - MGP_C3HHeJ_P0020393 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020394.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462225 75474090 - MGP_C3HHeJ_P0020394 Atg9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020395.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462225 75472549 - MGP_C3HHeJ_P0020395 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020396.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75462226 75474090 - MGP_C3HHeJ_P0020396 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020397.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75465167 75468225 - MGP_C3HHeJ_P0020397 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0020398.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75469723 75473892 - Atg9a protein_coding retained_intron MGP_C3HHeJ_T0020399.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75471935 75474129 - Atg9a protein_coding retained_intron MGP_C3HHeJ_T0020400.1 MGP_C3HHeJ_G0015944.1 mouse_genomes_project 1 75472283 75473881 - MGP_C3HHeJ_P0020400 Atg9a protein_coding protein_coding MGP_C3HHeJ_T0023099.1 MGP_C3HHeJ_G0016499.1 mouse_genomes_project 1 174760163 174760985 + MGP_C3HHeJ_P0023099 Gm26620 protein_coding protein_coding MGP_C3HHeJ_T0012149.1 MGP_C3HHeJ_G0010253.1 mouse_genomes_project 1 139458793 139459330 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020180.1 MGP_C3HHeJ_G0015901.1 mouse_genomes_project 1 72653897 72770075 - MGP_C3HHeJ_P0020180 March4 protein_coding protein_coding MGP_C3HHeJ_T0011955.1 MGP_C3HHeJ_G0010059.1 mouse_genomes_project 1 58404841 58415976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023582.1 MGP_C3HHeJ_G0016626.1 mouse_genomes_project 1 184749015 184750316 + MGP_C3HHeJ_P0023582 Gm10518 protein_coding protein_coding MGP_C3HHeJ_T0005785.1 MGP_C3HHeJ_G0004845.1 mouse_genomes_project 1 107642978 107653948 - Gm7160 lincRNA lincRNA MGP_C3HHeJ_T0005786.1 MGP_C3HHeJ_G0004845.1 mouse_genomes_project 1 107652892 107653918 - Gm7160 lincRNA lincRNA MGP_C3HHeJ_T0023460.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180218504 180259252 + MGP_C3HHeJ_P0023460 Kmo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023461.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230148 180260143 + MGP_C3HHeJ_P0023461 Kmo protein_coding protein_coding MGP_C3HHeJ_T0023462.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230153 180253367 + Kmo protein_coding retained_intron MGP_C3HHeJ_T0023463.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230178 180235494 + Kmo protein_coding processed_transcript MGP_C3HHeJ_T0023464.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230332 180261357 + MGP_C3HHeJ_P0023464 Kmo protein_coding protein_coding MGP_C3HHeJ_T0023465.1 MGP_C3HHeJ_G0016599.1 mouse_genomes_project 1 180230391 180247813 + Kmo protein_coding processed_transcript MGP_C3HHeJ_T0019458.1 MGP_C3HHeJ_G0015769.1 mouse_genomes_project 1 44804850 44833988 + protein_coding processed_transcript MGP_C3HHeJ_T0005790.1 MGP_C3HHeJ_G0004849.1 mouse_genomes_project 1 109460484 109466842 + Gm15389 lincRNA lincRNA MGP_C3HHeJ_T0018575.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5415977 6405810 - MGP_C3HHeJ_P0018575 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018576.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5415977 6405145 - MGP_C3HHeJ_P0018576 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018577.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5415977 6405436 - MGP_C3HHeJ_P0018577 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018578.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417180 6406451 - MGP_C3HHeJ_P0018578 Sntg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018579.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417685 5530401 - Sntg1 protein_coding processed_transcript MGP_C3HHeJ_T0018580.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417927 5530360 - Sntg1 protein_coding processed_transcript MGP_C3HHeJ_T0018581.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5417977 5881909 - MGP_C3HHeJ_P0018581 Sntg1 protein_coding protein_coding MGP_C3HHeJ_T0018582.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5756706 6405854 - MGP_C3HHeJ_P0018582 Sntg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018583.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 5861799 6406081 - Sntg1 protein_coding retained_intron MGP_C3HHeJ_T0018584.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 6052123 6054238 - Sntg1 protein_coding retained_intron MGP_C3HHeJ_T0018585.1 MGP_C3HHeJ_G0015594.1 mouse_genomes_project 1 6052386 6404798 - Sntg1 protein_coding processed_transcript MGP_C3HHeJ_T0019878.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59904029 59958723 + MGP_C3HHeJ_P0019878 Carf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019879.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59904046 59914845 + Carf protein_coding retained_intron MGP_C3HHeJ_T0019880.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59904046 59933998 + MGP_C3HHeJ_P0019880 Carf protein_coding protein_coding MGP_C3HHeJ_T0019881.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59907028 59910264 + Carf protein_coding retained_intron MGP_C3HHeJ_T0019882.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59908461 59958378 + MGP_C3HHeJ_P0019882 Carf protein_coding unknown_likely_coding MGP_C3HHeJ_T0019883.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59913885 59958491 + MGP_C3HHeJ_P0019883 Carf protein_coding protein_coding MGP_C3HHeJ_T0019884.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59913885 59958491 + MGP_C3HHeJ_P0019884 Carf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019885.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59947258 59949674 + Carf protein_coding retained_intron MGP_C3HHeJ_T0019886.1 MGP_C3HHeJ_G0015844.1 mouse_genomes_project 1 59948910 59955718 + MGP_C3HHeJ_P0019886 Carf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012206.1 MGP_C3HHeJ_G0010310.1 mouse_genomes_project 1 164441839 164442304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012201.1 MGP_C3HHeJ_G0010305.1 mouse_genomes_project 1 161017836 161018034 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023203.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242161 175255940 + MGP_C3HHeJ_P0023203 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023204.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242415 175255934 + MGP_C3HHeJ_P0023204 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023205.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242424 175255295 + MGP_C3HHeJ_P0023205 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023206.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242582 175253908 + MGP_C3HHeJ_P0023206 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023207.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175242623 175254563 + MGP_C3HHeJ_P0023207 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023208.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175243724 175252023 + MGP_C3HHeJ_P0023208 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023209.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175244001 175251952 + MGP_C3HHeJ_P0023209 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023210.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175245069 175255229 + MGP_C3HHeJ_P0023210 Dedd protein_coding protein_coding MGP_C3HHeJ_T0023211.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175250422 175253745 + Dedd protein_coding retained_intron MGP_C3HHeJ_T0023212.1 MGP_C3HHeJ_G0016519.1 mouse_genomes_project 1 175251596 175253838 + MGP_C3HHeJ_P0023212 Dedd protein_coding protein_coding MGP_C3HHeJ_T0011908.1 MGP_C3HHeJ_G0010012.1 mouse_genomes_project 1 44503285 44504466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012122.1 MGP_C3HHeJ_G0010226.1 mouse_genomes_project 1 124044782 124046090 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011871.1 MGP_C3HHeJ_G0009975.1 mouse_genomes_project 1 32742705 32743180 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101086.1 MGP_C3HHeJ_G0039277.1 mouse_genomes_project 1 117613551 117629200 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101087.1 MGP_C3HHeJ_G0039277.1 mouse_genomes_project 1 117613966 117615153 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101088.1 MGP_C3HHeJ_G0039277.1 mouse_genomes_project 1 117614394 117629205 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0020750.1 MGP_C3HHeJ_G0016004.1 mouse_genomes_project 1 86627142 86649916 - MGP_C3HHeJ_P0020750 Gpr55 protein_coding protein_coding MGP_C3HHeJ_T0011938.1 MGP_C3HHeJ_G0010042.1 mouse_genomes_project 1 52620192 52620515 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011881.1 MGP_C3HHeJ_G0009985.1 mouse_genomes_project 1 33198281 33198516 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000553.1 MGP_C3HHeJ_G0000500.1 mouse_genomes_project 1 107890441 107895394 + TEC TEC MGP_C3HHeJ_T0012062.1 MGP_C3HHeJ_G0010166.1 mouse_genomes_project 1 101742115 101743818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022988.1 MGP_C3HHeJ_G0016468.1 mouse_genomes_project 1 169921804 169959651 - MGP_C3HHeJ_P0022988 Mael protein_coding protein_coding MGP_C3HHeJ_T0022989.1 MGP_C3HHeJ_G0016468.1 mouse_genomes_project 1 169921988 169959648 - MGP_C3HHeJ_P0022989 Mael protein_coding protein_coding MGP_C3HHeJ_T0000419.1 MGP_C3HHeJ_G0000366.1 mouse_genomes_project 1 35836558 35839312 - TEC TEC MGP_C3HHeJ_T0021587.1 MGP_C3HHeJ_G0016190.1 mouse_genomes_project 1 129962875 130002055 + MGP_C3HHeJ_P0021587 Acmsd protein_coding protein_coding MGP_C3HHeJ_T0021588.1 MGP_C3HHeJ_G0016190.1 mouse_genomes_project 1 129990192 130002055 + Acmsd protein_coding processed_transcript MGP_C3HHeJ_T0012251.1 MGP_C3HHeJ_G0010355.1 mouse_genomes_project 1 187227670 187228454 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019579.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52601601 52610457 - MGP_C3HHeJ_P0019579 Asnsd1 protein_coding protein_coding MGP_C3HHeJ_T0019580.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52601629 52610457 - MGP_C3HHeJ_P0019580 Asnsd1 protein_coding protein_coding MGP_C3HHeJ_T0019581.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52605535 52610457 - MGP_C3HHeJ_P0019581 Asnsd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019582.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52605942 52608980 - MGP_C3HHeJ_P0019582 Asnsd1 protein_coding protein_coding MGP_C3HHeJ_T0019583.1 MGP_C3HHeJ_G0015791.1 mouse_genomes_project 1 52608021 52610275 - Asnsd1 protein_coding retained_intron MGP_C3HHeJ_T0002791.1 MGP_C3HHeJ_G0002643.1 mouse_genomes_project 1 94068803 94071190 - 5033417F24Rik antisense antisense MGP_C3HHeJ_T0019638.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621287 54648589 + MGP_C3HHeJ_P0019638 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019639.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621287 54646562 + MGP_C3HHeJ_P0019639 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019640.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621316 54648588 + Mob4 protein_coding retained_intron MGP_C3HHeJ_T0019641.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621338 54645623 + MGP_C3HHeJ_P0019641 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019642.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621343 54645983 + MGP_C3HHeJ_P0019642 Mob4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019643.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621376 54645407 + MGP_C3HHeJ_P0019643 Mob4 protein_coding protein_coding MGP_C3HHeJ_T0019644.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54621382 54636123 + Mob4 protein_coding retained_intron MGP_C3HHeJ_T0019645.1 MGP_C3HHeJ_G0015802.1 mouse_genomes_project 1 54639582 54640470 + Mob4 protein_coding retained_intron MGP_C3HHeJ_T0020940.1 MGP_C3HHeJ_G0016043.1 mouse_genomes_project 1 88975080 89122343 + MGP_C3HHeJ_P0020940 protein_coding protein_coding MGP_C3HHeJ_T0020944.1 MGP_C3HHeJ_G0016043.1 mouse_genomes_project 1 88999196 89122337 + MGP_C3HHeJ_P0020944 protein_coding protein_coding MGP_C3HHeJ_T0012141.1 MGP_C3HHeJ_G0010245.1 mouse_genomes_project 1 134723440 134723797 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000528.1 MGP_C3HHeJ_G0000475.1 mouse_genomes_project 1 88748074 88751067 + TEC TEC MGP_C3HHeJ_T0099892.1 MGP_C3HHeJ_G0038086.1 mouse_genomes_project 1 151439134 151439263 - Gm22966 snoRNA snoRNA MGP_C3HHeJ_T0016760.1 MGP_C3HHeJ_G0014853.1 mouse_genomes_project 1 37988104 37992540 - Gm15832 processed_transcript processed_transcript MGP_C3HHeJ_T0021251.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94948959 94974020 + MGP_C3HHeJ_P0021251 Atg4b protein_coding protein_coding MGP_C3HHeJ_T0021252.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952829 94991097 + MGP_C3HHeJ_P0021252 Atg4b protein_coding protein_coding MGP_C3HHeJ_T0021253.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952912 94976625 + MGP_C3HHeJ_P0021253 Atg4b protein_coding protein_coding MGP_C3HHeJ_T0021254.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952959 94985408 + MGP_C3HHeJ_P0021254 Atg4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021255.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94952969 94988661 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021256.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94953086 94965827 + Atg4b protein_coding processed_transcript MGP_C3HHeJ_T0021257.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94965803 94973785 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021258.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94984827 94985564 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021259.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94985281 94988359 + MGP_C3HHeJ_P0021259 Atg4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021260.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94986065 94987063 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0021261.1 MGP_C3HHeJ_G0016114.1 mouse_genomes_project 1 94986700 94988381 + Atg4b protein_coding retained_intron MGP_C3HHeJ_T0023051.1 MGP_C3HHeJ_G0016486.1 mouse_genomes_project 1 173557444 173563989 - MGP_C3HHeJ_P0023051 Rgs4 protein_coding protein_coding MGP_C3HHeJ_T0023052.1 MGP_C3HHeJ_G0016486.1 mouse_genomes_project 1 173557810 173563991 - MGP_C3HHeJ_P0023052 Rgs4 protein_coding protein_coding MGP_C3HHeJ_T0023053.1 MGP_C3HHeJ_G0016486.1 mouse_genomes_project 1 173560208 173563972 - Rgs4 protein_coding retained_intron MGP_C3HHeJ_T0005747.1 MGP_C3HHeJ_G0004811.1 mouse_genomes_project 1 89525778 89536144 + Gm19589 lincRNA lincRNA MGP_C3HHeJ_T0012030.1 MGP_C3HHeJ_G0010134.1 mouse_genomes_project 1 83880550 83881338 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011794.1 MGP_C3HHeJ_G0009898.1 mouse_genomes_project 1 8018834 8019589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002746.1 MGP_C3HHeJ_G0002609.1 mouse_genomes_project 1 58857477 58859767 + G730003C15Rik antisense antisense MGP_C3HHeJ_T0002747.1 MGP_C3HHeJ_G0002609.1 mouse_genomes_project 1 58857477 58859769 + G730003C15Rik antisense antisense MGP_C3HHeJ_T0000706.1 MGP_C3HHeJ_G0000651.1 mouse_genomes_project 1 172132819 172134519 - TEC TEC MGP_C3HHeJ_T0012182.1 MGP_C3HHeJ_G0010286.1 mouse_genomes_project 1 154261983 154262906 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002792.1 MGP_C3HHeJ_G0002644.1 mouse_genomes_project 1 94093940 94112040 - 9430060I03Rik antisense antisense MGP_C3HHeJ_T0000668.1 MGP_C3HHeJ_G0000613.1 mouse_genomes_project 1 160396623 160398952 + TEC TEC MGP_C3HHeJ_T0022149.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139090653 139120527 + Kif14 protein_coding retained_intron MGP_C3HHeJ_T0022150.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139092245 139158802 + MGP_C3HHeJ_P0022150 Kif14 protein_coding protein_coding MGP_C3HHeJ_T0022151.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139092245 139154937 + MGP_C3HHeJ_P0022151 Kif14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022152.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139092268 139158802 + MGP_C3HHeJ_P0022152 Kif14 protein_coding protein_coding MGP_C3HHeJ_T0022153.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139093313 139096032 + Kif14 protein_coding retained_intron MGP_C3HHeJ_T0022154.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139100675 139104842 + Kif14 protein_coding processed_transcript MGP_C3HHeJ_T0022155.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139100675 139104842 + Kif14 protein_coding processed_transcript MGP_C3HHeJ_T0022156.1 MGP_C3HHeJ_G0016311.1 mouse_genomes_project 1 139100675 139104842 + MGP_C3HHeJ_P0022156 Kif14 protein_coding protein_coding MGP_C3HHeJ_T0098328.1 MGP_C3HHeJ_G0036539.1 mouse_genomes_project 1 146709029 146712694 + Gm29170 sense_intronic sense_intronic MGP_C3HHeJ_T0000399.1 MGP_C3HHeJ_G0000347.1 mouse_genomes_project 1 30638454 30641823 + TEC TEC MGP_C3HHeJ_T0023337.1 MGP_C3HHeJ_G0016549.1 mouse_genomes_project 1 176623893 176632563 - MGP_C3HHeJ_P0023337 Kcnj9 protein_coding protein_coding MGP_C3HHeJ_T0023338.1 MGP_C3HHeJ_G0016549.1 mouse_genomes_project 1 176625494 176632527 - MGP_C3HHeJ_P0023338 Kcnj9 protein_coding protein_coding MGP_C3HHeJ_T0023339.1 MGP_C3HHeJ_G0016549.1 mouse_genomes_project 1 176628550 176631352 - Kcnj9 protein_coding retained_intron MGP_C3HHeJ_T0101591.1 MGP_C3HHeJ_G0039557.1 mouse_genomes_project 1 177378973 177379832 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012207.1 MGP_C3HHeJ_G0010311.1 mouse_genomes_project 1 164875138 164876335 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000505.1 MGP_C3HHeJ_G0000452.1 mouse_genomes_project 1 82625030 82626834 + TEC TEC MGP_C3HHeJ_T0023387.1 MGP_C3HHeJ_G0016567.1 mouse_genomes_project 1 177551910 177557837 - MGP_C3HHeJ_P0023387 Fcer1a protein_coding protein_coding MGP_C3HHeJ_T0023388.1 MGP_C3HHeJ_G0016567.1 mouse_genomes_project 1 177552019 177557817 - MGP_C3HHeJ_P0023388 Fcer1a protein_coding protein_coding MGP_C3HHeJ_T0023031.1 MGP_C3HHeJ_G0016479.1 mouse_genomes_project 1 171128308 171153322 - MGP_C3HHeJ_P0023031 Mgst3 protein_coding protein_coding MGP_C3HHeJ_T0020966.1 MGP_C3HHeJ_G0016053.1 mouse_genomes_project 1 89473381 89483554 - MGP_C3HHeJ_P0020966 Glrp1 protein_coding protein_coding MGP_C3HHeJ_T0011991.1 MGP_C3HHeJ_G0010095.1 mouse_genomes_project 1 65488884 65489658 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000605.1 MGP_C3HHeJ_G0000551.1 mouse_genomes_project 1 136330570 136332268 + TEC TEC MGP_C3HHeJ_T0019661.1 MGP_C3HHeJ_G0015807.1 mouse_genomes_project 1 56191012 56192404 - MGP_C3HHeJ_P0019661 Hsfy2 protein_coding protein_coding MGP_C3HHeJ_T0011821.1 MGP_C3HHeJ_G0009925.1 mouse_genomes_project 1 18285134 18286320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011824.1 MGP_C3HHeJ_G0009928.1 mouse_genomes_project 1 18926608 18926804 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000379.1 MGP_C3HHeJ_G0000327.1 mouse_genomes_project 1 23024655 23027761 - TEC TEC MGP_C3HHeJ_T0099887.1 MGP_C3HHeJ_G0038081.1 mouse_genomes_project 1 140046870 140046967 - Gm23534 snoRNA snoRNA MGP_C3HHeJ_T0005819.1 MGP_C3HHeJ_G0004870.1 mouse_genomes_project 1 126706325 127057150 - lincRNA lincRNA MGP_C3HHeJ_T0021361.1 MGP_C3HHeJ_G0016138.1 mouse_genomes_project 1 108219595 108401083 - MGP_C3HHeJ_P0021361 Bcl2 protein_coding protein_coding MGP_C3HHeJ_T0021362.1 MGP_C3HHeJ_G0016138.1 mouse_genomes_project 1 108397152 108399988 - MGP_C3HHeJ_P0021362 Bcl2 protein_coding protein_coding MGP_C3HHeJ_T0012178.1 MGP_C3HHeJ_G0010282.1 mouse_genomes_project 1 152271240 152272776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021754.1 MGP_C3HHeJ_G0016229.1 mouse_genomes_project 1 134234231 134237167 + Slc41a1 protein_coding processed_transcript MGP_C3HHeJ_T0021755.1 MGP_C3HHeJ_G0016229.1 mouse_genomes_project 1 134234715 134255745 + MGP_C3HHeJ_P0021755 Slc41a1 protein_coding protein_coding MGP_C3HHeJ_T0021756.1 MGP_C3HHeJ_G0016229.1 mouse_genomes_project 1 134249719 134253509 + Slc41a1 protein_coding retained_intron MGP_C3HHeJ_T0018936.1 MGP_C3HHeJ_G0015669.1 mouse_genomes_project 1 29208506 29242415 + MGP_C3HHeJ_P0018936 Lgsn protein_coding protein_coding MGP_C3HHeJ_T0018937.1 MGP_C3HHeJ_G0015669.1 mouse_genomes_project 1 29223347 29242415 + MGP_C3HHeJ_P0018937 Lgsn protein_coding protein_coding MGP_C3HHeJ_T0000401.1 MGP_C3HHeJ_G0000349.1 mouse_genomes_project 1 31096316 31101323 - TEC TEC MGP_C3HHeJ_T0023652.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185795738 185809929 - MGP_C3HHeJ_P0023652 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023653.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185798724 185809831 - MGP_C3HHeJ_P0023653 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023654.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185798724 185810240 - MGP_C3HHeJ_P0023654 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023655.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185806515 185809900 - MGP_C3HHeJ_P0023655 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0023656.1 MGP_C3HHeJ_G0016636.1 mouse_genomes_project 1 185806523 185809900 - MGP_C3HHeJ_P0023656 H3f3a protein_coding protein_coding MGP_C3HHeJ_T0005907.1 MGP_C3HHeJ_G0004940.1 mouse_genomes_project 1 169486678 169487970 - Gm36972 lincRNA lincRNA MGP_C3HHeJ_T0012234.1 MGP_C3HHeJ_G0010338.1 mouse_genomes_project 1 176387918 176388248 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023953.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417181 196438500 - MGP_C3HHeJ_P0023953 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023954.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417193 196438472 - MGP_C3HHeJ_P0023954 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023955.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417197 196438473 - MGP_C3HHeJ_P0023955 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023956.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417197 196438472 - MGP_C3HHeJ_P0023956 Tatdn3 protein_coding protein_coding MGP_C3HHeJ_T0023957.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417200 196422300 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023958.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196417463 196438425 - MGP_C3HHeJ_P0023958 Tatdn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023959.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196429123 196433045 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023960.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196432097 196433640 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023961.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196432979 196438472 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023962.1 MGP_C3HHeJ_G0016698.1 mouse_genomes_project 1 196434252 196438472 - Tatdn3 protein_coding retained_intron MGP_C3HHeJ_T0023543.1 MGP_C3HHeJ_G0016617.1 mouse_genomes_project 1 183289779 183321379 + Efcab2 protein_coding processed_transcript MGP_C3HHeJ_T0023544.1 MGP_C3HHeJ_G0016617.1 mouse_genomes_project 1 183289797 183370798 + MGP_C3HHeJ_P0023544 Efcab2 protein_coding protein_coding MGP_C3HHeJ_T0023545.1 MGP_C3HHeJ_G0016617.1 mouse_genomes_project 1 183332218 183367753 + Efcab2 protein_coding processed_transcript MGP_C3HHeJ_T0023227.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314742 175336156 + Arhgap30 protein_coding retained_intron MGP_C3HHeJ_T0023228.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314742 175336098 + Arhgap30 protein_coding retained_intron MGP_C3HHeJ_T0023229.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314742 175336098 + MGP_C3HHeJ_P0023229 Arhgap30 protein_coding protein_coding MGP_C3HHeJ_T0023230.1 MGP_C3HHeJ_G0016524.1 mouse_genomes_project 1 175314787 175318604 + Arhgap30 protein_coding retained_intron MGP_C3HHeJ_T0023795.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530389 188531031 + Hhipl2 protein_coding processed_transcript MGP_C3HHeJ_T0023796.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530663 188553242 + MGP_C3HHeJ_P0023796 Hhipl2 protein_coding protein_coding MGP_C3HHeJ_T0023797.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530760 188537944 + Hhipl2 protein_coding processed_transcript MGP_C3HHeJ_T0023798.1 MGP_C3HHeJ_G0016666.1 mouse_genomes_project 1 188530965 188552921 + MGP_C3HHeJ_P0023798 Hhipl2 protein_coding protein_coding MGP_C3HHeJ_T0098676.1 MGP_C3HHeJ_G0036870.1 mouse_genomes_project 1 181330173 181330281 + Gm26104 snRNA snRNA MGP_C3HHeJ_T0019185.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36116651 36221952 - MGP_C3HHeJ_P0019185 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019186.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36122977 36212247 - MGP_C3HHeJ_P0019186 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019187.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36122977 36223302 - MGP_C3HHeJ_P0019187 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019188.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36150450 36212220 - MGP_C3HHeJ_P0019188 Tsga10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019189.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36185962 36221709 - MGP_C3HHeJ_P0019189 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019190.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36186994 36221946 - MGP_C3HHeJ_P0019190 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019191.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36187830 36221946 - MGP_C3HHeJ_P0019191 Tsga10 protein_coding protein_coding MGP_C3HHeJ_T0019192.1 MGP_C3HHeJ_G0015712.1 mouse_genomes_project 1 36196933 36200593 - Tsga10 protein_coding retained_intron MGP_C3HHeJ_T0023377.1 MGP_C3HHeJ_G0016560.1 mouse_genomes_project 1 177021905 177024612 + MGP_C3HHeJ_P0023377 Crp protein_coding protein_coding MGP_C3HHeJ_T0023378.1 MGP_C3HHeJ_G0016560.1 mouse_genomes_project 1 177021906 177162309 + Crp protein_coding processed_transcript MGP_C3HHeJ_T0012031.1 MGP_C3HHeJ_G0010135.1 mouse_genomes_project 1 84765927 84766473 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011757.1 MGP_C3HHeJ_G0009861.1 mouse_genomes_project 1 1844451 1845371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023659.1 MGP_C3HHeJ_G0016638.1 mouse_genomes_project 1 185901592 185907588 + MGP_C3HHeJ_P0023659 Lefty2 protein_coding protein_coding MGP_C3HHeJ_T0023660.1 MGP_C3HHeJ_G0016638.1 mouse_genomes_project 1 185902942 185905972 + Lefty2 protein_coding retained_intron MGP_C3HHeJ_T0005899.1 MGP_C3HHeJ_G0004935.1 mouse_genomes_project 1 168336427 168368126 + Gm37184 lincRNA lincRNA MGP_C3HHeJ_T0099881.1 MGP_C3HHeJ_G0038075.1 mouse_genomes_project 1 125538106 125538237 - Gm24791 snoRNA snoRNA MGP_C3HHeJ_T0018776.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14035384 14050823 - MGP_C3HHeJ_P0018776 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018777.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036425 14050981 - MGP_C3HHeJ_P0018777 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018778.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036800 14050957 - MGP_C3HHeJ_P0018778 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018779.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036827 14050977 - MGP_C3HHeJ_P0018779 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018780.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14036849 14050853 - MGP_C3HHeJ_P0018780 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018781.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14037001 14041878 - MGP_C3HHeJ_P0018781 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018782.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14037131 14050564 - MGP_C3HHeJ_P0018782 Tceb1 protein_coding protein_coding MGP_C3HHeJ_T0018783.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14040670 14050839 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0018784.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14040789 14050854 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0018785.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14041519 14050817 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0018786.1 MGP_C3HHeJ_G0015628.1 mouse_genomes_project 1 14041574 14050981 - Tceb1 protein_coding retained_intron MGP_C3HHeJ_T0021304.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99155814 99199674 - MGP_C3HHeJ_P0021304 Pam protein_coding protein_coding MGP_C3HHeJ_T0021305.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180048 99448933 - MGP_C3HHeJ_P0021305 Pam protein_coding protein_coding MGP_C3HHeJ_T0021306.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180049 99448944 - MGP_C3HHeJ_P0021306 Pam protein_coding protein_coding MGP_C3HHeJ_T0021307.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180054 99328187 - MGP_C3HHeJ_P0021307 Pam protein_coding protein_coding MGP_C3HHeJ_T0021308.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180666 99199252 - MGP_C3HHeJ_P0021308 Pam protein_coding protein_coding MGP_C3HHeJ_T0021309.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99180926 99193510 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021310.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99184521 99199744 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021311.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99196394 99199254 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021312.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99211787 99223327 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021313.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99213496 99247054 - MGP_C3HHeJ_P0021313 Pam protein_coding protein_coding MGP_C3HHeJ_T0021314.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99285413 99328000 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021315.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99308425 99328176 - Pam protein_coding processed_transcript MGP_C3HHeJ_T0021316.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99406831 99410725 - Pam protein_coding retained_intron MGP_C3HHeJ_T0021317.1 MGP_C3HHeJ_G0016128.1 mouse_genomes_project 1 99410814 99448958 - Pam protein_coding processed_transcript MGP_C3HHeJ_T0000338.1 MGP_C3HHeJ_G0000288.1 mouse_genomes_project 1 6307321 6308371 - TEC TEC MGP_C3HHeJ_T0101554.1 MGP_C3HHeJ_G0039520.1 mouse_genomes_project 1 65356218 65356386 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012113.1 MGP_C3HHeJ_G0010217.1 mouse_genomes_project 1 121813008 121813718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021596.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050199 130075407 - MGP_C3HHeJ_P0021596 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021597.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050208 130075407 - MGP_C3HHeJ_P0021597 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021598.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050208 130075407 - MGP_C3HHeJ_P0021598 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021599.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050217 130075407 - MGP_C3HHeJ_P0021599 Map3k19 protein_coding protein_coding MGP_C3HHeJ_T0021600.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130050217 130089753 - MGP_C3HHeJ_P0021600 Map3k19 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021601.1 MGP_C3HHeJ_G0016192.1 mouse_genomes_project 1 130075316 130089753 - MGP_C3HHeJ_P0021601 Map3k19 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023077.1 MGP_C3HHeJ_G0016492.1 mouse_genomes_project 1 174062994 174086454 + MGP_C3HHeJ_P0023077 Sh2d1b2 protein_coding protein_coding MGP_C3HHeJ_T0023078.1 MGP_C3HHeJ_G0016492.1 mouse_genomes_project 1 174063022 174084486 + MGP_C3HHeJ_P0023078 Sh2d1b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005656.1 MGP_C3HHeJ_G0004742.1 mouse_genomes_project 1 51758768 51822645 + Gm553 lincRNA lincRNA MGP_C3HHeJ_T0012109.1 MGP_C3HHeJ_G0010213.1 mouse_genomes_project 1 120807897 120808216 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005734.1 MGP_C3HHeJ_G0004800.1 mouse_genomes_project 1 80831750 80835180 + Gm29125 lincRNA lincRNA MGP_C3HHeJ_T0021353.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107654072 107698452 + MGP_C3HHeJ_P0021353 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021354.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107654355 107698445 + MGP_C3HHeJ_P0021354 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021355.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107667784 107696826 + MGP_C3HHeJ_P0021355 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021356.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107667799 107691879 + MGP_C3HHeJ_P0021356 Zcchc2 protein_coding protein_coding MGP_C3HHeJ_T0021357.1 MGP_C3HHeJ_G0016136.1 mouse_genomes_project 1 107675405 107687627 + MGP_C3HHeJ_P0021357 Zcchc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000484.1 MGP_C3HHeJ_G0000431.1 mouse_genomes_project 1 70762441 70768278 - TEC TEC MGP_C3HHeJ_T0000407.1 MGP_C3HHeJ_G0000354.1 mouse_genomes_project 1 32062935 32064563 - TEC TEC MGP_C3HHeJ_T0012000.1 MGP_C3HHeJ_G0010104.1 mouse_genomes_project 1 69523613 69524364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022286.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152935341 153031966 - MGP_C3HHeJ_P0022286 Pla2g4a protein_coding protein_coding MGP_C3HHeJ_T0022287.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152935766 153042132 - MGP_C3HHeJ_P0022287 Pla2g4a protein_coding protein_coding MGP_C3HHeJ_T0022288.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152992138 153073190 - MGP_C3HHeJ_P0022288 Pla2g4a protein_coding protein_coding MGP_C3HHeJ_T0022289.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 152992178 153010724 - Pla2g4a protein_coding processed_transcript MGP_C3HHeJ_T0022290.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 153028403 153073216 - Pla2g4a protein_coding retained_intron MGP_C3HHeJ_T0022291.1 MGP_C3HHeJ_G0016339.1 mouse_genomes_project 1 153041938 153073187 - Pla2g4a protein_coding processed_transcript MGP_C3HHeJ_T0097957.1 MGP_C3HHeJ_G0036169.1 mouse_genomes_project 1 77486083 77486177 + Gm25974 rRNA rRNA MGP_C3HHeJ_T0012098.1 MGP_C3HHeJ_G0010202.1 mouse_genomes_project 1 114750697 114752841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021232.1 MGP_C3HHeJ_G0016110.1 mouse_genomes_project 1 94693849 94810202 + MGP_C3HHeJ_P0021232 Farp2 protein_coding protein_coding MGP_C3HHeJ_T0021233.1 MGP_C3HHeJ_G0016110.1 mouse_genomes_project 1 94693882 94767484 + MGP_C3HHeJ_P0021233 Farp2 protein_coding protein_coding MGP_C3HHeJ_T0021035.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321001 92345800 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021036.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321008 92356060 + MGP_C3HHeJ_P0021036 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021037.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321016 92356345 + MGP_C3HHeJ_P0021037 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021038.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321034 92360674 + MGP_C3HHeJ_P0021038 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021039.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321062 92356093 + MGP_C3HHeJ_P0021039 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021040.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321263 92356247 + MGP_C3HHeJ_P0021040 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021041.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92321353 92335907 + MGP_C3HHeJ_P0021041 Ube2f protein_coding protein_coding MGP_C3HHeJ_T0021042.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92335256 92346765 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021043.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92345269 92346873 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021044.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92346431 92355711 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0021045.1 MGP_C3HHeJ_G0016069.1 mouse_genomes_project 1 92353969 92355336 + Ube2f protein_coding retained_intron MGP_C3HHeJ_T0011869.1 MGP_C3HHeJ_G0009973.1 mouse_genomes_project 1 32552204 32553837 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005922.1 MGP_C3HHeJ_G0004954.1 mouse_genomes_project 1 180892766 180896329 + Gm38101 lincRNA lincRNA MGP_C3HHeJ_T0022406.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166522 156339008 + MGP_C3HHeJ_P0022406 Nmnat2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022407.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166527 156339105 + MGP_C3HHeJ_P0022407 Nmnat2 protein_coding protein_coding MGP_C3HHeJ_T0022408.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166570 156313124 + MGP_C3HHeJ_P0022408 Nmnat2 protein_coding protein_coding MGP_C3HHeJ_T0022409.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156166803 156296017 + Nmnat2 protein_coding processed_transcript MGP_C3HHeJ_T0022410.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156250835 156293330 + Nmnat2 protein_coding retained_intron MGP_C3HHeJ_T0022411.1 MGP_C3HHeJ_G0016360.1 mouse_genomes_project 1 156312515 156313633 + Nmnat2 protein_coding processed_transcript MGP_C3HHeJ_T0012176.1 MGP_C3HHeJ_G0010280.1 mouse_genomes_project 1 152049058 152053031 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023231.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337157 175343991 + MGP_C3HHeJ_P0023231 Usf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023232.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337157 175345009 + MGP_C3HHeJ_P0023232 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023233.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337157 175342843 + MGP_C3HHeJ_P0023233 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023234.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337170 175341599 + Usf1 protein_coding processed_transcript MGP_C3HHeJ_T0023235.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337178 175343226 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0023236.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337218 175341475 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0023237.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337228 175344625 + MGP_C3HHeJ_P0023237 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023238.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175337525 175344611 + MGP_C3HHeJ_P0023238 Usf1 protein_coding protein_coding MGP_C3HHeJ_T0023239.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175343199 175343800 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0023240.1 MGP_C3HHeJ_G0016525.1 mouse_genomes_project 1 175343329 175344301 + Usf1 protein_coding retained_intron MGP_C3HHeJ_T0005822.1 MGP_C3HHeJ_G0004873.1 mouse_genomes_project 1 129087531 129091852 - 4930599A14Rik lincRNA lincRNA MGP_C3HHeJ_T0005823.1 MGP_C3HHeJ_G0004873.1 mouse_genomes_project 1 129090052 129091878 - 4930599A14Rik lincRNA lincRNA MGP_C3HHeJ_T0012229.1 MGP_C3HHeJ_G0010333.1 mouse_genomes_project 1 174814483 174814778 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011149.1 MGP_C3HHeJ_G0009282.1 mouse_genomes_project 1 46848626 46848896 - Gm23829 misc_RNA misc_RNA MGP_C3HHeJ_T0000566.1 MGP_C3HHeJ_G0000513.1 mouse_genomes_project 1 124974311 124976036 + TEC TEC MGP_C3HHeJ_T0019459.1 MGP_C3HHeJ_G0015770.1 mouse_genomes_project 1 45021880 45629225 + protein_coding processed_transcript MGP_C3HHeJ_T0021178.1 MGP_C3HHeJ_G0016100.1 mouse_genomes_project 1 94303971 94314157 + MGP_C3HHeJ_P0021178 Agxt protein_coding protein_coding MGP_C3HHeJ_T0021179.1 MGP_C3HHeJ_G0016100.1 mouse_genomes_project 1 94304299 94306743 + Agxt protein_coding retained_intron MGP_C3HHeJ_T0021180.1 MGP_C3HHeJ_G0016100.1 mouse_genomes_project 1 94308611 94314153 + Agxt protein_coding processed_transcript MGP_C3HHeJ_T0012152.1 MGP_C3HHeJ_G0010256.1 mouse_genomes_project 1 141417293 141417615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019926.1 MGP_C3HHeJ_G0015851.1 mouse_genomes_project 1 60800327 60818303 + MGP_C3HHeJ_P0019926 Icos protein_coding protein_coding MGP_C3HHeJ_T0019927.1 MGP_C3HHeJ_G0015851.1 mouse_genomes_project 1 60800327 60822810 + MGP_C3HHeJ_P0019927 Icos protein_coding protein_coding MGP_C3HHeJ_T0098621.1 MGP_C3HHeJ_G0036815.1 mouse_genomes_project 1 64930014 64930170 - Gm24788 snRNA snRNA MGP_C3HHeJ_T0009460.1 MGP_C3HHeJ_G0007593.1 mouse_genomes_project 1 171040857 171040958 + Mir6347 miRNA miRNA MGP_C3HHeJ_T0099883.1 MGP_C3HHeJ_G0038077.1 mouse_genomes_project 1 130742700 130742834 + Gm23902 snoRNA snoRNA MGP_C3HHeJ_T0005970.1 MGP_C3HHeJ_G0004989.1 mouse_genomes_project 1 191961336 191964782 + A430105J06Rik lincRNA lincRNA MGP_C3HHeJ_T0002859.1 MGP_C3HHeJ_G0002694.1 mouse_genomes_project 1 164583555 164584438 + Gm37362 antisense antisense MGP_C3HHeJ_T0024048.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198503486 198527049 - MGP_C3HHeJ_P0024048 Diexf protein_coding protein_coding MGP_C3HHeJ_T0024049.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198504948 198529931 - MGP_C3HHeJ_P0024049 Diexf protein_coding protein_coding MGP_C3HHeJ_T0024050.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198516776 198543599 - MGP_C3HHeJ_P0024050 Diexf protein_coding protein_coding MGP_C3HHeJ_T0024051.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198516792 198543571 - MGP_C3HHeJ_P0024051 Diexf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024052.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198520127 198527752 - Diexf protein_coding retained_intron MGP_C3HHeJ_T0024053.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198532851 198534845 - Diexf protein_coding retained_intron MGP_C3HHeJ_T0024054.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198533016 198541680 - Diexf protein_coding processed_transcript MGP_C3HHeJ_T0024055.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198534415 198543534 - MGP_C3HHeJ_P0024055 Diexf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024056.1 MGP_C3HHeJ_G0016718.1 mouse_genomes_project 1 198534433 198536182 - Diexf protein_coding processed_transcript MGP_C3HHeJ_T0024086.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198640277 198663500 - MGP_C3HHeJ_P0024086 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024087.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198640325 198662467 - MGP_C3HHeJ_P0024087 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024088.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198640332 198687722 - MGP_C3HHeJ_P0024088 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024089.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198642284 198664431 - MGP_C3HHeJ_P0024089 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024090.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198649611 198661269 - MGP_C3HHeJ_P0024090 Hsd11b1 protein_coding protein_coding MGP_C3HHeJ_T0024091.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198657900 198659882 - Hsd11b1 protein_coding retained_intron MGP_C3HHeJ_T0024092.1 MGP_C3HHeJ_G0016723.1 mouse_genomes_project 1 198659128 198662293 - Hsd11b1 protein_coding processed_transcript MGP_C3HHeJ_T0011918.1 MGP_C3HHeJ_G0010022.1 mouse_genomes_project 1 47621857 47622070 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022127.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787288 138814688 - MGP_C3HHeJ_P0022127 Mroh3 protein_coding protein_coding MGP_C3HHeJ_T0022128.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787466 138797422 - MGP_C3HHeJ_P0022128 Mroh3 protein_coding protein_coding MGP_C3HHeJ_T0022129.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787466 138818967 - MGP_C3HHeJ_P0022129 Mroh3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022130.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138787476 138789644 - Mroh3 protein_coding retained_intron MGP_C3HHeJ_T0022131.1 MGP_C3HHeJ_G0016306.1 mouse_genomes_project 1 138797494 138806298 - MGP_C3HHeJ_P0022131 Mroh3 protein_coding protein_coding MGP_C3HHeJ_T0002858.1 MGP_C3HHeJ_G0002693.1 mouse_genomes_project 1 163780450 163972596 + Gm36975 antisense antisense MGP_C3HHeJ_T0021631.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130485972 130505494 + MGP_C3HHeJ_P0021631 Ubxn4 protein_coding protein_coding MGP_C3HHeJ_T0021632.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130486170 130525735 + MGP_C3HHeJ_P0021632 Ubxn4 protein_coding protein_coding MGP_C3HHeJ_T0021633.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130505462 130519523 + Ubxn4 protein_coding retained_intron MGP_C3HHeJ_T0021634.1 MGP_C3HHeJ_G0016196.1 mouse_genomes_project 1 130520983 130523377 + Ubxn4 protein_coding retained_intron MGP_C3HHeJ_T0012108.1 MGP_C3HHeJ_G0010212.1 mouse_genomes_project 1 120645482 120645796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019131.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35089792 35241856 - MGP_C3HHeJ_P0019131 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019132.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35089795 35242151 - MGP_C3HHeJ_P0019132 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019133.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35098602 35114296 - Tmem131 protein_coding retained_intron MGP_C3HHeJ_T0019134.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35105776 35107768 - Tmem131 protein_coding retained_intron MGP_C3HHeJ_T0019135.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35111363 35116475 - MGP_C3HHeJ_P0019135 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019136.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35113131 35116866 - MGP_C3HHeJ_P0019136 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0019137.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35116373 35122342 - MGP_C3HHeJ_P0019137 Tmem131 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019138.1 MGP_C3HHeJ_G0015704.1 mouse_genomes_project 1 35140232 35245966 - MGP_C3HHeJ_P0019138 Tmem131 protein_coding protein_coding MGP_C3HHeJ_T0011753.1 MGP_C3HHeJ_G0009857.1 mouse_genomes_project 1 1668879 1669815 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023518.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182093306 182097187 + MGP_C3HHeJ_P0023518 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023519.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182093314 182097236 + MGP_C3HHeJ_P0023519 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023520.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182094739 182097879 + MGP_C3HHeJ_P0023520 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023521.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182094751 182097677 + MGP_C3HHeJ_P0023521 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023522.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182094827 182097609 + MGP_C3HHeJ_P0023522 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0023523.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182095721 182096596 + Zbtb18 protein_coding processed_transcript MGP_C3HHeJ_T0023524.1 MGP_C3HHeJ_G0016610.1 mouse_genomes_project 1 182095911 182103815 + MGP_C3HHeJ_P0023524 Zbtb18 protein_coding protein_coding MGP_C3HHeJ_T0000717.1 MGP_C3HHeJ_G0000662.1 mouse_genomes_project 1 180788193 180790629 + TEC TEC MGP_C3HHeJ_T0101600.1 MGP_C3HHeJ_G0039566.1 mouse_genomes_project 1 178722678 178723621 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016763.1 MGP_C3HHeJ_G0014855.1 mouse_genomes_project 1 42754677 42774992 - Gm29247 processed_transcript processed_transcript MGP_C3HHeJ_T0016764.1 MGP_C3HHeJ_G0014855.1 mouse_genomes_project 1 42754778 42775736 - Gm29247 processed_transcript processed_transcript MGP_C3HHeJ_T0005916.1 MGP_C3HHeJ_G0004948.1 mouse_genomes_project 1 174007052 174008197 + Gm37748 lincRNA lincRNA MGP_C3HHeJ_T0021058.1 MGP_C3HHeJ_G0016072.1 mouse_genomes_project 1 92426731 92438075 + MGP_C3HHeJ_P0021058 Klhl30 protein_coding protein_coding MGP_C3HHeJ_T0005715.1 MGP_C3HHeJ_G0004785.1 mouse_genomes_project 1 73811459 73818889 + Gm29186 lincRNA lincRNA MGP_C3HHeJ_T0002812.1 MGP_C3HHeJ_G0002657.1 mouse_genomes_project 1 132838811 132934597 + antisense antisense MGP_C3HHeJ_T0005862.1 MGP_C3HHeJ_G0004906.1 mouse_genomes_project 1 153278591 153283960 - Ptgs2os2 lincRNA lincRNA MGP_C3HHeJ_T0011915.1 MGP_C3HHeJ_G0010019.1 mouse_genomes_project 1 46577367 46578698 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011750.1 MGP_C3HHeJ_G0009854.1 mouse_genomes_project 1 1315272 1320048 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101597.1 MGP_C3HHeJ_G0039563.1 mouse_genomes_project 1 178554033 178563599 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021275.1 MGP_C3HHeJ_G0016118.1 mouse_genomes_project 1 95253715 95258680 + MGP_C3HHeJ_P0021275 Neu4 protein_coding protein_coding MGP_C3HHeJ_T0021276.1 MGP_C3HHeJ_G0016118.1 mouse_genomes_project 1 95253757 95261597 + MGP_C3HHeJ_P0021276 Neu4 protein_coding protein_coding MGP_C3HHeJ_T0002838.1 MGP_C3HHeJ_G0002677.1 mouse_genomes_project 1 143460269 143549512 - 4930590L20Rik antisense antisense MGP_C3HHeJ_T0000651.1 MGP_C3HHeJ_G0000596.1 mouse_genomes_project 1 154676336 154679364 - TEC TEC MGP_C3HHeJ_T0022755.1 MGP_C3HHeJ_G0016418.1 mouse_genomes_project 1 164971096 164994042 + MGP_C3HHeJ_P0022755 Tnfsf4 protein_coding protein_coding MGP_C3HHeJ_T0021338.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311482 107336590 + 2310035C23Rik protein_coding processed_transcript MGP_C3HHeJ_T0021339.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311482 107405932 + MGP_C3HHeJ_P0021339 2310035C23Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021340.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311504 107405935 + MGP_C3HHeJ_P0021340 2310035C23Rik protein_coding protein_coding MGP_C3HHeJ_T0021341.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311534 107407051 + MGP_C3HHeJ_P0021341 2310035C23Rik protein_coding protein_coding MGP_C3HHeJ_T0021342.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311544 107405571 + MGP_C3HHeJ_P0021342 2310035C23Rik protein_coding protein_coding MGP_C3HHeJ_T0021343.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107311558 107312772 + 2310035C23Rik protein_coding processed_transcript MGP_C3HHeJ_T0021344.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107312062 107390375 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021345.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107346119 107407046 + MGP_C3HHeJ_P0021345 2310035C23Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021346.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107354660 107367328 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021347.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107381949 107386436 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021348.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107392085 107405385 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0021349.1 MGP_C3HHeJ_G0016134.1 mouse_genomes_project 1 107392853 107402853 + 2310035C23Rik protein_coding retained_intron MGP_C3HHeJ_T0097971.1 MGP_C3HHeJ_G0036183.1 mouse_genomes_project 1 165126272 165126390 - Gm25488 rRNA rRNA MGP_C3HHeJ_T0005917.1 MGP_C3HHeJ_G0004949.1 mouse_genomes_project 1 174007254 174010412 - Gm37502 lincRNA lincRNA MGP_C3HHeJ_T0011155.1 MGP_C3HHeJ_G0009288.1 mouse_genomes_project 1 73684637 73684791 + Gm27315 misc_RNA misc_RNA MGP_C3HHeJ_T0022630.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161665573 161774779 - MGP_C3HHeJ_P0022630 Brinp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022631.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161665573 161774876 - MGP_C3HHeJ_P0022631 Brinp2 protein_coding protein_coding MGP_C3HHeJ_T0022632.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161717532 161718292 - Brinp2 protein_coding processed_transcript MGP_C3HHeJ_T0022633.1 MGP_C3HHeJ_G0016400.1 mouse_genomes_project 1 161770857 161774845 - Brinp2 protein_coding retained_intron MGP_C3HHeJ_T0021500.1 MGP_C3HHeJ_G0016171.1 mouse_genomes_project 1 122101316 122108939 - MGP_C3HHeJ_P0021500 Tmem37 protein_coding protein_coding MGP_C3HHeJ_T0005987.1 MGP_C3HHeJ_G0005003.1 mouse_genomes_project 1 198455013 198456442 - Gm31406 lincRNA lincRNA MGP_C3HHeJ_T0098606.1 MGP_C3HHeJ_G0036800.1 mouse_genomes_project 1 30671447 30671510 - Gm24732 snRNA snRNA MGP_C3HHeJ_T0011799.1 MGP_C3HHeJ_G0009903.1 mouse_genomes_project 1 9857994 9858681 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018592.1 MGP_C3HHeJ_G0015597.1 mouse_genomes_project 1 6714435 6740015 + MGP_C3HHeJ_P0018592 3110035E14Rik protein_coding protein_coding MGP_C3HHeJ_T0011946.1 MGP_C3HHeJ_G0010050.1 mouse_genomes_project 1 54837578 54837974 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016860.1 MGP_C3HHeJ_G0014885.1 mouse_genomes_project 1 175956727 175961978 - A630035G10Rik processed_transcript lincRNA MGP_C3HHeJ_T0016861.1 MGP_C3HHeJ_G0014885.1 mouse_genomes_project 1 175960164 175962021 - A630035G10Rik processed_transcript retained_intron MGP_C3HHeJ_T0019025.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33031633 33062522 - MGP_C3HHeJ_P0019025 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019026.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33031640 33062537 - MGP_C3HHeJ_P0019026 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019027.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33035639 33062436 - MGP_C3HHeJ_P0019027 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019028.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33035756 33062457 - MGP_C3HHeJ_P0019028 Fam168b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019029.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33036413 33062506 - MGP_C3HHeJ_P0019029 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019030.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33038016 33062485 - Fam168b protein_coding processed_transcript MGP_C3HHeJ_T0019031.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33038103 33062476 - MGP_C3HHeJ_P0019031 Fam168b protein_coding protein_coding MGP_C3HHeJ_T0019032.1 MGP_C3HHeJ_G0015686.1 mouse_genomes_project 1 33047095 33062537 - Fam168b protein_coding retained_intron MGP_C3HHeJ_T0023107.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174828447 174845058 - MGP_C3HHeJ_P0023107 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023108.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830120 174845058 - MGP_C3HHeJ_P0023108 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023109.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830294 174831191 - Fcgr2b protein_coding processed_transcript MGP_C3HHeJ_T0023110.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830329 174845494 - MGP_C3HHeJ_P0023110 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023111.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174830553 174845058 - MGP_C3HHeJ_P0023111 Fcgr2b protein_coding protein_coding MGP_C3HHeJ_T0023112.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174833868 174845058 - Fcgr2b protein_coding retained_intron MGP_C3HHeJ_T0023113.1 MGP_C3HHeJ_G0016502.1 mouse_genomes_project 1 174838794 174845058 - Fcgr2b protein_coding retained_intron MGP_C3HHeJ_T0012276.1 MGP_C3HHeJ_G0010380.1 mouse_genomes_project 1 200317862 200318220 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005611.1 MGP_C3HHeJ_G0004715.1 mouse_genomes_project 1 34590416 34591132 + 4930403P22Rik lincRNA lincRNA MGP_C3HHeJ_T0022269.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147171410 147178356 - MGP_C3HHeJ_P0022269 Rgs1 protein_coding protein_coding MGP_C3HHeJ_T0022270.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147172327 147178170 - Rgs1 protein_coding retained_intron MGP_C3HHeJ_T0022271.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173086 147178174 - MGP_C3HHeJ_P0022271 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022272.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173709 147178174 - MGP_C3HHeJ_P0022272 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022273.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173786 147178142 - MGP_C3HHeJ_P0022273 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022274.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147173786 147178172 - MGP_C3HHeJ_P0022274 Rgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022275.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147174576 147178173 - MGP_C3HHeJ_P0022275 Rgs1 protein_coding protein_coding MGP_C3HHeJ_T0022276.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147176906 147178172 - Rgs1 protein_coding retained_intron MGP_C3HHeJ_T0022277.1 MGP_C3HHeJ_G0016335.1 mouse_genomes_project 1 147176909 147178175 - Rgs1 protein_coding retained_intron MGP_C3HHeJ_T0101335.1 MGP_C3HHeJ_G0039414.1 mouse_genomes_project 1 98262958 98349551 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101336.1 MGP_C3HHeJ_G0039414.1 mouse_genomes_project 1 98280964 98349211 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0005982.1 MGP_C3HHeJ_G0004999.1 mouse_genomes_project 1 196655589 196679285 + Gm37168 lincRNA lincRNA MGP_C3HHeJ_T0005864.1 MGP_C3HHeJ_G0004908.1 mouse_genomes_project 1 154297017 154301341 + C730036E19Rik lincRNA lincRNA MGP_C3HHeJ_T0011941.1 MGP_C3HHeJ_G0010045.1 mouse_genomes_project 1 54552835 54553641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002787.1 MGP_C3HHeJ_G0002639.1 mouse_genomes_project 1 92886561 92891749 - Gm29100 antisense antisense MGP_C3HHeJ_T0000350.1 MGP_C3HHeJ_G0000300.1 mouse_genomes_project 1 10527392 10528088 - TEC TEC MGP_C3HHeJ_T0000395.1 MGP_C3HHeJ_G0000343.1 mouse_genomes_project 1 28813053 28815932 - TEC TEC MGP_C3HHeJ_T0016800.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672545 137673483 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016801.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672546 137696403 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016802.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672548 137673355 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016803.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137672675 137673636 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016804.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137674059 137674508 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016805.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137674318 137675584 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016806.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137675212 137676138 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016807.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137690244 137696377 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016808.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137690262 137692168 - Ptprv processed_transcript retained_intron MGP_C3HHeJ_T0016809.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137693369 137694973 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0016810.1 MGP_C3HHeJ_G0014871.1 mouse_genomes_project 1 137693480 137696352 - Ptprv processed_transcript processed_transcript MGP_C3HHeJ_T0020190.1 MGP_C3HHeJ_G0015903.1 mouse_genomes_project 1 72881067 72939481 - MGP_C3HHeJ_P0020190 Ankar protein_coding protein_coding MGP_C3HHeJ_T0002735.1 MGP_C3HHeJ_G0002600.1 mouse_genomes_project 1 43444529 43449784 - 4930521E06Rik antisense antisense MGP_C3HHeJ_T0021079.1 MGP_C3HHeJ_G0016076.1 mouse_genomes_project 1 92493091 92535876 - MGP_C3HHeJ_P0021079 Per2 protein_coding protein_coding MGP_C3HHeJ_T0021080.1 MGP_C3HHeJ_G0016076.1 mouse_genomes_project 1 92524286 92526430 - Per2 protein_coding processed_transcript MGP_C3HHeJ_T0023430.1 MGP_C3HHeJ_G0016588.1 mouse_genomes_project 1 178739200 178740246 + MGP_C3HHeJ_P0023430 Olfr420 protein_coding protein_coding MGP_C3HHeJ_T0020639.1 MGP_C3HHeJ_G0015981.1 mouse_genomes_project 1 82753959 82814460 - MGP_C3HHeJ_P0020639 Irs1 protein_coding protein_coding MGP_C3HHeJ_T0020222.1 MGP_C3HHeJ_G0015911.1 mouse_genomes_project 1 74491673 74494516 - MGP_C3HHeJ_P0020222 Cxcr1 protein_coding protein_coding MGP_C3HHeJ_T0020223.1 MGP_C3HHeJ_G0015911.1 mouse_genomes_project 1 74491673 74493120 - MGP_C3HHeJ_P0020223 Cxcr1 protein_coding protein_coding MGP_C3HHeJ_T0009406.1 MGP_C3HHeJ_G0007539.1 mouse_genomes_project 1 63021433 63021520 + Gm24557 miRNA miRNA MGP_C3HHeJ_T0101326.1 MGP_C3HHeJ_G0039410.1 mouse_genomes_project 1 15450355 15475806 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101327.1 MGP_C3HHeJ_G0039410.1 mouse_genomes_project 1 15465248 15475285 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0002800.1 MGP_C3HHeJ_G0002650.1 mouse_genomes_project 1 106979402 106986241 + Gm17634 antisense antisense MGP_C3HHeJ_T0002801.1 MGP_C3HHeJ_G0002650.1 mouse_genomes_project 1 106980156 106986383 + Gm17634 antisense antisense MGP_C3HHeJ_T0002802.1 MGP_C3HHeJ_G0002650.1 mouse_genomes_project 1 106980542 106980906 + Gm17634 antisense antisense MGP_C3HHeJ_T0011165.1 MGP_C3HHeJ_G0009298.1 mouse_genomes_project 1 181426907 181427172 + Gm25288 misc_RNA misc_RNA MGP_C3HHeJ_T0022984.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852216 169891451 + MGP_C3HHeJ_P0022984 Gpa33 protein_coding protein_coding MGP_C3HHeJ_T0022985.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852318 169882469 + MGP_C3HHeJ_P0022985 Gpa33 protein_coding protein_coding MGP_C3HHeJ_T0022986.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852395 169879076 + Gpa33 protein_coding processed_transcript MGP_C3HHeJ_T0022987.1 MGP_C3HHeJ_G0016467.1 mouse_genomes_project 1 169852445 169891450 + MGP_C3HHeJ_P0022987 Gpa33 protein_coding protein_coding MGP_C3HHeJ_T0011838.1 MGP_C3HHeJ_G0009942.1 mouse_genomes_project 1 23692013 23692569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018508.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881326 1923572 + MGP_C3HHeJ_P0018508 Lypla1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018509.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881361 1921788 + MGP_C3HHeJ_P0018509 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018510.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881368 1916309 + MGP_C3HHeJ_P0018510 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018512.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881434 1920224 + MGP_C3HHeJ_P0018512 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018513.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881436 1915992 + MGP_C3HHeJ_P0018513 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018514.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881449 1920402 + MGP_C3HHeJ_P0018514 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018515.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1881479 1921788 + MGP_C3HHeJ_P0018515 Lypla1 protein_coding protein_coding MGP_C3HHeJ_T0018516.1 MGP_C3HHeJ_G0015583.1 mouse_genomes_project 1 1911924 1917847 + Lypla1 protein_coding retained_intron MGP_C3HHeJ_T0000363.1 MGP_C3HHeJ_G0000313.1 mouse_genomes_project 1 14318263 14319090 + TEC TEC MGP_C3HHeJ_T0005744.1 MGP_C3HHeJ_G0004808.1 mouse_genomes_project 1 87947101 87951211 - Gm29374 lincRNA lincRNA MGP_C3HHeJ_T0000482.1 MGP_C3HHeJ_G0000429.1 mouse_genomes_project 1 69930983 69932869 + TEC TEC MGP_C3HHeJ_T0009463.1 MGP_C3HHeJ_G0007596.1 mouse_genomes_project 1 172827129 172827249 - Mir6354 miRNA miRNA MGP_C3HHeJ_T0002830.1 MGP_C3HHeJ_G0002669.1 mouse_genomes_project 1 137673007 137677210 + Gm10535 antisense antisense MGP_C3HHeJ_T0023023.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171059561 171083985 + MGP_C3HHeJ_P0023023 Tmco1 protein_coding protein_coding MGP_C3HHeJ_T0023024.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171059853 171083985 + MGP_C3HHeJ_P0023024 Tmco1 protein_coding protein_coding MGP_C3HHeJ_T0023025.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171059919 171087166 + MGP_C3HHeJ_P0023025 Tmco1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023026.1 MGP_C3HHeJ_G0016477.1 mouse_genomes_project 1 171066710 171083800 + MGP_C3HHeJ_P0023026 Tmco1 protein_coding protein_coding MGP_C3HHeJ_T0099913.1 MGP_C3HHeJ_G0038107.1 mouse_genomes_project 1 177266362 177266485 - Gm26077 snoRNA snoRNA MGP_C3HHeJ_T0012115.1 MGP_C3HHeJ_G0010219.1 mouse_genomes_project 1 121898369 121898599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000681.1 MGP_C3HHeJ_G0000626.1 mouse_genomes_project 1 164124026 164125284 - TEC TEC MGP_C3HHeJ_T0000434.1 MGP_C3HHeJ_G0000381.1 mouse_genomes_project 1 45978569 45982425 - TEC TEC MGP_C3HHeJ_T0020607.1 MGP_C3HHeJ_G0015975.1 mouse_genomes_project 1 80213275 80218705 + MGP_C3HHeJ_P0020607 Mrpl44 protein_coding protein_coding MGP_C3HHeJ_T0020608.1 MGP_C3HHeJ_G0015975.1 mouse_genomes_project 1 80213373 80215808 + Mrpl44 protein_coding retained_intron MGP_C3HHeJ_T0101596.1 MGP_C3HHeJ_G0039562.1 mouse_genomes_project 1 178552538 178554178 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012273.1 MGP_C3HHeJ_G0010377.1 mouse_genomes_project 1 198468450 198468565 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098683.1 MGP_C3HHeJ_G0036877.1 mouse_genomes_project 1 197184882 197184986 - Gm22446 snRNA snRNA MGP_C3HHeJ_T0002702.1 MGP_C3HHeJ_G0002573.1 mouse_genomes_project 1 16533148 16577566 - Gm15825 antisense antisense MGP_C3HHeJ_T0005695.1 MGP_C3HHeJ_G0004774.1 mouse_genomes_project 1 69642459 69645891 - Gm29113 lincRNA lincRNA MGP_C3HHeJ_T0005834.1 MGP_C3HHeJ_G0004884.1 mouse_genomes_project 1 136958924 136962877 + Platr1 lincRNA lincRNA MGP_C3HHeJ_T0023299.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426723 176435210 + MGP_C3HHeJ_P0023299 Pex19 protein_coding protein_coding MGP_C3HHeJ_T0023300.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426724 176430966 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0023301.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426730 176437470 + MGP_C3HHeJ_P0023301 Pex19 protein_coding protein_coding MGP_C3HHeJ_T0023302.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426741 176430132 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0023303.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176426741 176428859 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0023304.1 MGP_C3HHeJ_G0016542.1 mouse_genomes_project 1 176433822 176434627 + Pex19 protein_coding retained_intron MGP_C3HHeJ_T0012136.1 MGP_C3HHeJ_G0010240.1 mouse_genomes_project 1 130764302 130764610 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011795.1 MGP_C3HHeJ_G0009899.1 mouse_genomes_project 1 8362953 8363562 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018791.1 MGP_C3HHeJ_G0015630.1 mouse_genomes_project 1 14085220 14090377 + Ly96 protein_coding retained_intron MGP_C3HHeJ_T0018792.1 MGP_C3HHeJ_G0015630.1 mouse_genomes_project 1 14085604 14108990 + MGP_C3HHeJ_P0018792 Ly96 protein_coding protein_coding MGP_C3HHeJ_T0018793.1 MGP_C3HHeJ_G0015630.1 mouse_genomes_project 1 14085679 14108916 + MGP_C3HHeJ_P0018793 Ly96 protein_coding protein_coding MGP_C3HHeJ_T0022453.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045502 157079721 - MGP_C3HHeJ_P0022453 Rgsl1 protein_coding protein_coding MGP_C3HHeJ_T0022454.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045504 157119818 - MGP_C3HHeJ_P0022454 Rgsl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022455.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045507 157119846 - MGP_C3HHeJ_P0022455 Rgsl1 protein_coding protein_coding MGP_C3HHeJ_T0022456.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157045513 157098721 - MGP_C3HHeJ_P0022456 Rgsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022457.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157047809 157056877 - Rgsl1 protein_coding processed_transcript MGP_C3HHeJ_T0022458.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157051263 157119838 - MGP_C3HHeJ_P0022458 Rgsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022459.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157058727 157094044 - Rgsl1 protein_coding retained_intron MGP_C3HHeJ_T0022460.1 MGP_C3HHeJ_G0016369.1 mouse_genomes_project 1 157070721 157085395 - Rgsl1 protein_coding processed_transcript MGP_C3HHeJ_T0020354.1 MGP_C3HHeJ_G0015937.1 mouse_genomes_project 1 75288343 75294713 - MGP_C3HHeJ_P0020354 Ihh protein_coding protein_coding MGP_C3HHeJ_T0020355.1 MGP_C3HHeJ_G0015937.1 mouse_genomes_project 1 75290756 75294483 - Ihh protein_coding retained_intron MGP_C3HHeJ_T0012055.1 MGP_C3HHeJ_G0010159.1 mouse_genomes_project 1 98353793 98354757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000524.1 MGP_C3HHeJ_G0000471.1 mouse_genomes_project 1 87688081 87690715 + TEC TEC MGP_C3HHeJ_T0099916.1 MGP_C3HHeJ_G0038110.1 mouse_genomes_project 1 193868852 193868983 - Gm25095 snoRNA snoRNA MGP_C3HHeJ_T0000772.1 MGP_C3HHeJ_G0000714.1 mouse_genomes_project 1 198927168 198929314 + TEC TEC MGP_C3HHeJ_T0002879.1 MGP_C3HHeJ_G0002709.1 mouse_genomes_project 1 171792012 171914017 + Gm20711 antisense antisense MGP_C3HHeJ_T0018848.1 MGP_C3HHeJ_G0015650.1 mouse_genomes_project 1 18868584 18870952 + MGP_C3HHeJ_P0018848 protein_coding protein_coding MGP_C3HHeJ_T0019887.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 59993098 60158913 + MGP_C3HHeJ_P0019887 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019888.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 59993311 59999200 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019889.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60037974 60051292 + MGP_C3HHeJ_P0019889 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019890.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60042994 60045671 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019891.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60051194 60105272 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019892.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60083540 60146911 + MGP_C3HHeJ_P0019892 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019893.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60083548 60152082 + MGP_C3HHeJ_P0019893 Nbeal1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019894.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60089373 60092591 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0019895.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60102003 60115533 + MGP_C3HHeJ_P0019895 Nbeal1 protein_coding protein_coding MGP_C3HHeJ_T0019896.1 MGP_C3HHeJ_G0015845.1 mouse_genomes_project 1 60107168 60109430 + Nbeal1 protein_coding retained_intron MGP_C3HHeJ_T0002842.1 MGP_C3HHeJ_G0002680.1 mouse_genomes_project 1 153448988 153469376 - 2310030A07Rik antisense antisense MGP_C3HHeJ_T0000397.1 MGP_C3HHeJ_G0000345.1 mouse_genomes_project 1 30571337 30573146 + TEC TEC MGP_C3HHeJ_T0005915.1 MGP_C3HHeJ_G0004947.1 mouse_genomes_project 1 173117798 173135170 - Gm37839 lincRNA lincRNA MGP_C3HHeJ_T0012026.1 MGP_C3HHeJ_G0010130.1 mouse_genomes_project 1 83571583 83572213 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002920.1 MGP_C3HHeJ_G0002743.1 mouse_genomes_project 1 195192757 195197475 + Gm37422 antisense antisense MGP_C3HHeJ_T0011924.1 MGP_C3HHeJ_G0010028.1 mouse_genomes_project 1 48518021 48519727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002714.1 MGP_C3HHeJ_G0002584.1 mouse_genomes_project 1 35670468 35674913 - 4930439A04Rik antisense antisense MGP_C3HHeJ_T0002715.1 MGP_C3HHeJ_G0002584.1 mouse_genomes_project 1 35674295 35674929 - 4930439A04Rik antisense antisense MGP_C3HHeJ_T0005944.1 MGP_C3HHeJ_G0004970.1 mouse_genomes_project 1 188121925 188122079 + Gm38079 lincRNA lincRNA MGP_C3HHeJ_T0009470.1 MGP_C3HHeJ_G0007603.1 mouse_genomes_project 1 183243158 183243279 - Gm27458 miRNA miRNA MGP_C3HHeJ_T0000491.1 MGP_C3HHeJ_G0000438.1 mouse_genomes_project 1 75759545 75761737 - TEC TEC MGP_C3HHeJ_T0023923.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196063163 196282327 - MGP_C3HHeJ_P0023923 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023924.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196138100 196200289 - MGP_C3HHeJ_P0023924 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023925.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196138100 196282350 - MGP_C3HHeJ_P0023925 Rps6kc1 protein_coding protein_coding MGP_C3HHeJ_T0023926.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196138100 196282318 - MGP_C3HHeJ_P0023926 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023927.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196160721 196212024 - Rps6kc1 protein_coding retained_intron MGP_C3HHeJ_T0023928.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196163100 196282314 - Rps6kc1 protein_coding retained_intron MGP_C3HHeJ_T0023929.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196175145 196176721 - Rps6kc1 protein_coding retained_intron MGP_C3HHeJ_T0023930.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196241838 196270152 - Rps6kc1 protein_coding processed_transcript MGP_C3HHeJ_T0023931.1 MGP_C3HHeJ_G0016693.1 mouse_genomes_project 1 196255176 196282349 - MGP_C3HHeJ_P0023931 Rps6kc1 protein_coding protein_coding MGP_C3HHeJ_T0101599.1 MGP_C3HHeJ_G0039565.1 mouse_genomes_project 1 178671154 178671620 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000673.1 MGP_C3HHeJ_G0000618.1 mouse_genomes_project 1 161962550 161965168 + TEC TEC MGP_C3HHeJ_T0000608.1 MGP_C3HHeJ_G0000554.1 mouse_genomes_project 1 137346831 137348921 - TEC TEC MGP_C3HHeJ_T0002821.1 MGP_C3HHeJ_G0002664.1 mouse_genomes_project 1 135184256 135187728 + Gm10538 antisense antisense MGP_C3HHeJ_T0012248.1 MGP_C3HHeJ_G0010352.1 mouse_genomes_project 1 186326961 186328808 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011777.1 MGP_C3HHeJ_G0009881.1 mouse_genomes_project 1 4881007 4883230 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011751.1 MGP_C3HHeJ_G0009855.1 mouse_genomes_project 1 1588498 1592335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021032.1 MGP_C3HHeJ_G0016068.1 mouse_genomes_project 1 92240587 92267548 + MGP_C3HHeJ_P0021032 Ramp1 protein_coding protein_coding MGP_C3HHeJ_T0021033.1 MGP_C3HHeJ_G0016068.1 mouse_genomes_project 1 92240807 92267548 + MGP_C3HHeJ_P0021033 Ramp1 protein_coding protein_coding MGP_C3HHeJ_T0021034.1 MGP_C3HHeJ_G0016068.1 mouse_genomes_project 1 92240811 92286371 + MGP_C3HHeJ_P0021034 Ramp1 protein_coding protein_coding MGP_C3HHeJ_T0009432.1 MGP_C3HHeJ_G0007565.1 mouse_genomes_project 1 94519412 94519476 + Mir6902 miRNA miRNA MGP_C3HHeJ_T0002934.1 MGP_C3HHeJ_G0002751.1 mouse_genomes_project 1 197474279 197482580 + Gm26879 antisense antisense MGP_C3HHeJ_T0011967.1 MGP_C3HHeJ_G0010071.1 mouse_genomes_project 1 60713267 60713798 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021884.1 MGP_C3HHeJ_G0016254.1 mouse_genomes_project 1 135829975 135839783 + MGP_C3HHeJ_P0021884 Ren1 protein_coding protein_coding MGP_C3HHeJ_T0021885.1 MGP_C3HHeJ_G0016254.1 mouse_genomes_project 1 135831374 135833742 + MGP_C3HHeJ_P0021885 Ren1 protein_coding protein_coding MGP_C3HHeJ_T0023405.1 MGP_C3HHeJ_G0016573.1 mouse_genomes_project 1 178161736 178168225 + MGP_C3HHeJ_P0023405 protein_coding protein_coding MGP_C3HHeJ_T0002752.1 MGP_C3HHeJ_G0002613.1 mouse_genomes_project 1 61605097 61691287 - Pard3bos1 antisense antisense MGP_C3HHeJ_T0002753.1 MGP_C3HHeJ_G0002613.1 mouse_genomes_project 1 61625511 61691365 - Pard3bos1 antisense antisense MGP_C3HHeJ_T0009476.1 MGP_C3HHeJ_G0007609.1 mouse_genomes_project 1 195835134 195835222 - miRNA miRNA MGP_C3HHeJ_T0011862.1 MGP_C3HHeJ_G0009966.1 mouse_genomes_project 1 31248370 31249121 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023874.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 192830163 193288724 + MGP_C3HHeJ_P0023874 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0023875.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 192830401 193460469 + MGP_C3HHeJ_P0023875 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0023876.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 192831067 193021877 + Esrrg protein_coding processed_transcript MGP_C3HHeJ_T0023877.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 193235809 193460968 + MGP_C3HHeJ_P0023877 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0023878.1 MGP_C3HHeJ_G0016685.1 mouse_genomes_project 1 193235850 193460967 + MGP_C3HHeJ_P0023878 Esrrg protein_coding protein_coding MGP_C3HHeJ_T0097964.1 MGP_C3HHeJ_G0036176.1 mouse_genomes_project 1 120632312 120632429 - Gm22094 rRNA rRNA MGP_C3HHeJ_T0005650.1 MGP_C3HHeJ_G0004738.1 mouse_genomes_project 1 50413979 50416481 + Gm29325 lincRNA lincRNA MGP_C3HHeJ_T0011883.1 MGP_C3HHeJ_G0009987.1 mouse_genomes_project 1 35837899 35839689 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005737.1 MGP_C3HHeJ_G0004802.1 mouse_genomes_project 1 83357039 83357582 + Gm28942 lincRNA lincRNA MGP_C3HHeJ_T0016790.1 MGP_C3HHeJ_G0014867.1 mouse_genomes_project 1 90945629 90947258 + D130058E05Rik processed_transcript antisense MGP_C3HHeJ_T0016791.1 MGP_C3HHeJ_G0014867.1 mouse_genomes_project 1 90945656 90948686 + D130058E05Rik processed_transcript retained_intron MGP_C3HHeJ_T0024069.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198588711 198619966 - MGP_C3HHeJ_P0024069 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024070.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198588752 198620179 - MGP_C3HHeJ_P0024070 Traf3ip3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024071.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198588762 198620179 - MGP_C3HHeJ_P0024071 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024072.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198592495 198598073 - MGP_C3HHeJ_P0024072 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024073.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198592499 198616454 - Traf3ip3 protein_coding retained_intron MGP_C3HHeJ_T0024074.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198597828 198607555 - MGP_C3HHeJ_P0024074 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024075.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198597917 198600395 - MGP_C3HHeJ_P0024075 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024076.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198598444 198620087 - Traf3ip3 protein_coding retained_intron MGP_C3HHeJ_T0024077.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198607620 198620148 - Traf3ip3 protein_coding retained_intron MGP_C3HHeJ_T0024078.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198607787 198616603 - MGP_C3HHeJ_P0024078 Traf3ip3 protein_coding protein_coding MGP_C3HHeJ_T0024079.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198616659 198620130 - Traf3ip3 protein_coding processed_transcript MGP_C3HHeJ_T0024080.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198616666 198620134 - Traf3ip3 protein_coding processed_transcript MGP_C3HHeJ_T0024081.1 MGP_C3HHeJ_G0016721.1 mouse_genomes_project 1 198619527 198620335 - Traf3ip3 protein_coding processed_transcript MGP_C3HHeJ_T0021390.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109266923 109286062 + MGP_C3HHeJ_P0021390 Serpinb2 protein_coding protein_coding MGP_C3HHeJ_T0021391.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109266997 109286056 + MGP_C3HHeJ_P0021391 Serpinb2 protein_coding protein_coding MGP_C3HHeJ_T0021392.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109282511 109295814 + MGP_C3HHeJ_P0021392 Serpinb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021393.1 MGP_C3HHeJ_G0016149.1 mouse_genomes_project 1 109284225 109292999 + MGP_C3HHeJ_P0021393 Serpinb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005644.1 MGP_C3HHeJ_G0004733.1 mouse_genomes_project 1 46251763 46284565 + Gm28826 lincRNA lincRNA MGP_C3HHeJ_T0098609.1 MGP_C3HHeJ_G0036803.1 mouse_genomes_project 1 31567228 31567334 + Gm23453 snRNA snRNA MGP_C3HHeJ_T0020664.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376366 83438727 + MGP_C3HHeJ_P0020664 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020665.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376380 83433926 + MGP_C3HHeJ_P0020665 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020666.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376552 83433926 + MGP_C3HHeJ_P0020666 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020667.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376554 83433824 + MGP_C3HHeJ_P0020667 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020668.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376557 83433066 + MGP_C3HHeJ_P0020668 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020669.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376557 83433220 + MGP_C3HHeJ_P0020669 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020670.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376617 83432667 + MGP_C3HHeJ_P0020670 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0020671.1 MGP_C3HHeJ_G0015988.1 mouse_genomes_project 1 83376956 83417676 + MGP_C3HHeJ_P0020671 Agfg1 protein_coding protein_coding MGP_C3HHeJ_T0005679.1 MGP_C3HHeJ_G0004761.1 mouse_genomes_project 1 62662789 62673803 - Gm4208 lincRNA lincRNA MGP_C3HHeJ_T0011912.1 MGP_C3HHeJ_G0010016.1 mouse_genomes_project 1 44741083 44741347 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023701.1 MGP_C3HHeJ_G0016649.1 mouse_genomes_project 1 186807525 186823487 + protein_coding retained_intron MGP_C3HHeJ_T0023702.1 MGP_C3HHeJ_G0016649.1 mouse_genomes_project 1 186809573 186837667 + MGP_C3HHeJ_P0023702 protein_coding protein_coding MGP_C3HHeJ_T0023703.1 MGP_C3HHeJ_G0016649.1 mouse_genomes_project 1 186811277 186815512 + protein_coding processed_transcript MGP_C3HHeJ_T0099860.1 MGP_C3HHeJ_G0038054.1 mouse_genomes_project 1 79945523 79945649 - Gm24160 snoRNA snoRNA MGP_C3HHeJ_T0023373.1 MGP_C3HHeJ_G0016558.1 mouse_genomes_project 1 176921070 176926824 - MGP_C3HHeJ_P0023373 Fcrl6 protein_coding protein_coding MGP_C3HHeJ_T0023374.1 MGP_C3HHeJ_G0016558.1 mouse_genomes_project 1 176921965 176926820 - Fcrl6 protein_coding retained_intron MGP_C3HHeJ_T0023375.1 MGP_C3HHeJ_G0016558.1 mouse_genomes_project 1 176922404 176926824 - Fcrl6 protein_coding retained_intron MGP_C3HHeJ_T0005925.1 MGP_C3HHeJ_G0004957.1 mouse_genomes_project 1 182248187 182253691 - Gm37280 lincRNA lincRNA MGP_C3HHeJ_T0009382.1 MGP_C3HHeJ_G0007515.1 mouse_genomes_project 1 18147552 18147671 + Mir133b miRNA miRNA MGP_C3HHeJ_T0002833.1 MGP_C3HHeJ_G0002672.1 mouse_genomes_project 1 138174935 138190115 + Gm4793 antisense antisense MGP_C3HHeJ_T0002914.1 MGP_C3HHeJ_G0002738.1 mouse_genomes_project 1 192564703 192595314 - Gm38155 antisense antisense MGP_C3HHeJ_T0011849.1 MGP_C3HHeJ_G0009953.1 mouse_genomes_project 1 28762621 28762949 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005645.1 MGP_C3HHeJ_G0004734.1 mouse_genomes_project 1 48364049 48452699 + C230029F24Rik lincRNA lincRNA MGP_C3HHeJ_T0005646.1 MGP_C3HHeJ_G0004734.1 mouse_genomes_project 1 48364049 48454980 + C230029F24Rik lincRNA lincRNA MGP_C3HHeJ_T0023241.1 MGP_C3HHeJ_G0016526.1 mouse_genomes_project 1 175344738 175345233 + Tstd1 protein_coding processed_transcript MGP_C3HHeJ_T0023242.1 MGP_C3HHeJ_G0016526.1 mouse_genomes_project 1 175344899 175346219 + MGP_C3HHeJ_P0023242 Tstd1 protein_coding protein_coding MGP_C3HHeJ_T0023243.1 MGP_C3HHeJ_G0016526.1 mouse_genomes_project 1 175345585 175346218 + Tstd1 protein_coding retained_intron MGP_C3HHeJ_T0021125.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93793469 - protein_coding retained_intron MGP_C3HHeJ_T0021126.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93795483 - MGP_C3HHeJ_P0021126 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021127.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93795545 - MGP_C3HHeJ_P0021127 protein_coding protein_coding MGP_C3HHeJ_T0021128.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93790704 93794124 - MGP_C3HHeJ_P0021128 protein_coding protein_coding MGP_C3HHeJ_T0021129.1 MGP_C3HHeJ_G0016090.1 mouse_genomes_project 1 93792929 93795545 - protein_coding retained_intron MGP_C3HHeJ_T0005826.1 MGP_C3HHeJ_G0004876.1 mouse_genomes_project 1 133145302 133165530 + Gm28856 lincRNA lincRNA MGP_C3HHeJ_T0011876.1 MGP_C3HHeJ_G0009980.1 mouse_genomes_project 1 32968145 32968293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011916.1 MGP_C3HHeJ_G0010020.1 mouse_genomes_project 1 47010636 47011463 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000526.1 MGP_C3HHeJ_G0000473.1 mouse_genomes_project 1 87837624 87840552 + TEC TEC MGP_C3HHeJ_T0011847.1 MGP_C3HHeJ_G0009951.1 mouse_genomes_project 1 27142914 27143464 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005711.1 MGP_C3HHeJ_G0004783.1 mouse_genomes_project 1 73692113 73719521 + D530049I02Rik lincRNA lincRNA MGP_C3HHeJ_T0019086.1 MGP_C3HHeJ_G0015695.1 mouse_genomes_project 1 34740317 34778719 + MGP_C3HHeJ_P0019086 Cnnm4 protein_coding protein_coding MGP_C3HHeJ_T0019087.1 MGP_C3HHeJ_G0015695.1 mouse_genomes_project 1 34741174 34742546 + Cnnm4 protein_coding retained_intron MGP_C3HHeJ_T0005757.1 MGP_C3HHeJ_G0004820.1 mouse_genomes_project 1 91305632 91309087 + Gm28723 lincRNA lincRNA MGP_C3HHeJ_T0000667.1 MGP_C3HHeJ_G0000612.1 mouse_genomes_project 1 160219855 160225067 - TEC TEC MGP_C3HHeJ_T0000767.1 MGP_C3HHeJ_G0000710.1 mouse_genomes_project 1 198244170 198246267 - TEC TEC MGP_C3HHeJ_T0000768.1 MGP_C3HHeJ_G0000710.1 mouse_genomes_project 1 198244221 198245772 - TEC TEC MGP_C3HHeJ_T0023743.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187582391 187632378 - MGP_C3HHeJ_P0023743 Capn2 protein_coding protein_coding MGP_C3HHeJ_T0023744.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187585345 187594931 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0023745.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187587670 187596618 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0023746.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187598987 187608348 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0023747.1 MGP_C3HHeJ_G0016656.1 mouse_genomes_project 1 187598992 187632462 - Capn2 protein_coding retained_intron MGP_C3HHeJ_T0005967.1 MGP_C3HHeJ_G0004987.1 mouse_genomes_project 1 191366773 191415755 + Gm37134 lincRNA lincRNA MGP_C3HHeJ_T0000427.1 MGP_C3HHeJ_G0000374.1 mouse_genomes_project 1 39049997 39053905 - TEC TEC MGP_C3HHeJ_T0011893.1 MGP_C3HHeJ_G0009997.1 mouse_genomes_project 1 42043549 42043929 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020961.1 MGP_C3HHeJ_G0016051.1 mouse_genomes_project 1 89271224 89361740 + MGP_C3HHeJ_P0020961 Trpm8 protein_coding protein_coding MGP_C3HHeJ_T0020962.1 MGP_C3HHeJ_G0016051.1 mouse_genomes_project 1 89279273 89362182 + MGP_C3HHeJ_P0020962 Trpm8 protein_coding protein_coding MGP_C3HHeJ_T0020963.1 MGP_C3HHeJ_G0016051.1 mouse_genomes_project 1 89292690 89361740 + MGP_C3HHeJ_P0020963 Trpm8 protein_coding protein_coding MGP_C3HHeJ_T0012090.1 MGP_C3HHeJ_G0010194.1 mouse_genomes_project 1 112406777 112407599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009422.1 MGP_C3HHeJ_G0007555.1 mouse_genomes_project 1 84818367 84818480 - Mir6353 miRNA miRNA MGP_C3HHeJ_T0021007.1 MGP_C3HHeJ_G0016063.1 mouse_genomes_project 1 91966012 92007395 + MGP_C3HHeJ_P0021007 Mlph protein_coding protein_coding MGP_C3HHeJ_T0021008.1 MGP_C3HHeJ_G0016063.1 mouse_genomes_project 1 91978610 91979364 + MGP_C3HHeJ_P0021008 Mlph protein_coding protein_coding MGP_C3HHeJ_T0021009.1 MGP_C3HHeJ_G0016063.1 mouse_genomes_project 1 91993547 91994619 + Mlph protein_coding retained_intron MGP_C3HHeJ_T0002708.1 MGP_C3HHeJ_G0002579.1 mouse_genomes_project 1 32801208 32801717 - 1700101I19Rik antisense antisense MGP_C3HHeJ_T0002709.1 MGP_C3HHeJ_G0002579.1 mouse_genomes_project 1 32801230 32801619 - 1700101I19Rik antisense antisense MGP_C3HHeJ_T0000327.1 MGP_C3HHeJ_G0000277.1 mouse_genomes_project 1 805259 807610 + TEC TEC MGP_C3HHeJ_T0020448.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521500 75531369 + MGP_C3HHeJ_P0020448 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020449.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521559 75530485 + MGP_C3HHeJ_P0020449 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020450.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521559 75530485 + MGP_C3HHeJ_P0020450 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020451.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521563 75531373 + MGP_C3HHeJ_P0020451 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020452.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521581 75531371 + MGP_C3HHeJ_P0020452 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020453.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521607 75530736 + MGP_C3HHeJ_P0020453 Dnajb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020454.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521650 75531371 + MGP_C3HHeJ_P0020454 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020455.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521708 75524422 + MGP_C3HHeJ_P0020455 Dnajb2 protein_coding protein_coding MGP_C3HHeJ_T0020456.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75521866 75522776 + Dnajb2 protein_coding retained_intron MGP_C3HHeJ_T0020457.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75522169 75522619 + Dnajb2 protein_coding retained_intron MGP_C3HHeJ_T0020458.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75524012 75526596 + Dnajb2 protein_coding retained_intron MGP_C3HHeJ_T0020459.1 MGP_C3HHeJ_G0015950.1 mouse_genomes_project 1 75527083 75530608 + MGP_C3HHeJ_P0020459 Dnajb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101601.1 MGP_C3HHeJ_G0039567.1 mouse_genomes_project 1 178757914 178759294 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005735.1 MGP_C3HHeJ_G0004801.1 mouse_genomes_project 1 80894500 80924112 + 1700016L21Rik lincRNA lincRNA MGP_C3HHeJ_T0005736.1 MGP_C3HHeJ_G0004801.1 mouse_genomes_project 1 80894508 80928319 + 1700016L21Rik lincRNA lincRNA MGP_C3HHeJ_T0011144.1 MGP_C3HHeJ_G0009277.1 mouse_genomes_project 1 11175176 11175484 + Gm25491 misc_RNA misc_RNA MGP_C3HHeJ_T0018899.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22324279 22357756 + MGP_C3HHeJ_P0018899 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0018900.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22324358 22377234 + MGP_C3HHeJ_P0018900 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0018901.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22324376 22413234 + MGP_C3HHeJ_P0018901 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0018902.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22373981 22390117 + Lmbrd1 protein_coding retained_intron MGP_C3HHeJ_T0018903.1 MGP_C3HHeJ_G0015662.1 mouse_genomes_project 1 22390041 22409594 + MGP_C3HHeJ_P0018903 Lmbrd1 protein_coding protein_coding MGP_C3HHeJ_T0022768.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165561920 165566171 + MGP_C3HHeJ_P0022768 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022769.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165561922 165565066 + MGP_C3HHeJ_P0022769 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022770.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165561962 165566170 + MGP_C3HHeJ_P0022770 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022771.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165562033 165563608 + MGP_C3HHeJ_P0022771 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022772.1 MGP_C3HHeJ_G0016423.1 mouse_genomes_project 1 165562036 165563267 + MGP_C3HHeJ_P0022772 Pigc protein_coding protein_coding MGP_C3HHeJ_T0022105.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138555016 138564531 - MGP_C3HHeJ_P0022105 Igfn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022106.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138555023 138607471 - MGP_C3HHeJ_P0022106 Igfn1 protein_coding protein_coding MGP_C3HHeJ_T0022107.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138555462 138585664 - MGP_C3HHeJ_P0022107 Igfn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022108.1 MGP_C3HHeJ_G0016301.1 mouse_genomes_project 1 138556036 138583873 - MGP_C3HHeJ_P0022108 Igfn1 protein_coding protein_coding MGP_C3HHeJ_T0000606.1 MGP_C3HHeJ_G0000552.1 mouse_genomes_project 1 136610974 136613729 - TEC TEC MGP_C3HHeJ_T0011159.1 MGP_C3HHeJ_G0009292.1 mouse_genomes_project 1 99288147 99288459 + Gm25413 misc_RNA misc_RNA MGP_C3HHeJ_T0023411.1 MGP_C3HHeJ_G0016577.1 mouse_genomes_project 1 178261946 178285042 - MGP_C3HHeJ_P0023411 Ifi204 protein_coding protein_coding MGP_C3HHeJ_T0023412.1 MGP_C3HHeJ_G0016577.1 mouse_genomes_project 1 178275825 178285109 - Ifi204 protein_coding retained_intron MGP_C3HHeJ_T0023945.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375976 196382479 - Mfsd7b protein_coding retained_intron MGP_C3HHeJ_T0023946.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375976 196396674 - MGP_C3HHeJ_P0023946 Mfsd7b protein_coding protein_coding MGP_C3HHeJ_T0023947.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375978 196396483 - MGP_C3HHeJ_P0023947 Mfsd7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023948.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196375979 196378585 - Mfsd7b protein_coding retained_intron MGP_C3HHeJ_T0023949.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196383547 196385741 - Mfsd7b protein_coding retained_intron MGP_C3HHeJ_T0023950.1 MGP_C3HHeJ_G0016696.1 mouse_genomes_project 1 196395424 196396640 - MGP_C3HHeJ_P0023950 Mfsd7b protein_coding protein_coding MGP_C3HHeJ_T0009403.1 MGP_C3HHeJ_G0007536.1 mouse_genomes_project 1 54241629 54241734 + Gm24053 miRNA miRNA MGP_C3HHeJ_T0011928.1 MGP_C3HHeJ_G0010032.1 mouse_genomes_project 1 49351648 49352395 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009449.1 MGP_C3HHeJ_G0007582.1 mouse_genomes_project 1 140676651 140676731 + Mir181b-1 miRNA miRNA MGP_C3HHeJ_T0012253.1 MGP_C3HHeJ_G0010357.1 mouse_genomes_project 1 188381057 188397151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005800.1 MGP_C3HHeJ_G0004857.1 mouse_genomes_project 1 121343697 121353047 + Gm29455 lincRNA lincRNA MGP_C3HHeJ_T0005801.1 MGP_C3HHeJ_G0004857.1 mouse_genomes_project 1 121343739 121400366 + Gm29455 lincRNA lincRNA MGP_C3HHeJ_T0012224.1 MGP_C3HHeJ_G0010328.1 mouse_genomes_project 1 171047260 171047627 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000451.1 MGP_C3HHeJ_G0000398.1 mouse_genomes_project 1 59405817 59407689 - TEC TEC MGP_C3HHeJ_T0002927.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197312293 197327028 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002928.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197316395 197325267 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002929.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197316397 197325394 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002930.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197316586 197327861 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002931.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197320274 197333644 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0002932.1 MGP_C3HHeJ_G0002749.1 mouse_genomes_project 1 197326111 197333652 - 1700034H15Rik antisense antisense MGP_C3HHeJ_T0022773.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165575108 165888128 - MGP_C3HHeJ_P0022773 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022774.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165575113 165578372 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022775.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165579942 166072112 - MGP_C3HHeJ_P0022775 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022776.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165582852 166072112 - MGP_C3HHeJ_P0022776 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022777.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165584152 165588652 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022778.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165598927 165888072 - MGP_C3HHeJ_P0022778 Dnm3 protein_coding protein_coding MGP_C3HHeJ_T0022779.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165609214 165729491 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022780.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165865540 165888087 - Dnm3 protein_coding processed_transcript MGP_C3HHeJ_T0022781.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165874985 165906161 - Dnm3 protein_coding processed_transcript MGP_C3HHeJ_T0022782.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165911332 166072090 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0022783.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165976752 166017081 - Dnm3 protein_coding processed_transcript MGP_C3HHeJ_T0022784.1 MGP_C3HHeJ_G0016424.1 mouse_genomes_project 1 165997167 165999641 - Dnm3 protein_coding retained_intron MGP_C3HHeJ_T0016767.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56544749 56550239 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0016768.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56546519 56548650 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0016769.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56546521 56619406 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0016770.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56547373 56550235 + 9130024F11Rik processed_transcript TEC MGP_C3HHeJ_T0016771.1 MGP_C3HHeJ_G0014858.1 mouse_genomes_project 1 56617283 56626975 + 9130024F11Rik processed_transcript antisense MGP_C3HHeJ_T0012163.1 MGP_C3HHeJ_G0010267.1 mouse_genomes_project 1 146044866 146046136 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002938.1 MGP_C3HHeJ_G0002754.1 mouse_genomes_project 1 198600528 198605634 + Gm15872 antisense antisense MGP_C3HHeJ_T0012217.1 MGP_C3HHeJ_G0010321.1 mouse_genomes_project 1 169339974 169340764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012239.1 MGP_C3HHeJ_G0010343.1 mouse_genomes_project 1 181517082 181517919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101547.1 MGP_C3HHeJ_G0039513.1 mouse_genomes_project 1 44783970 44786350 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011158.1 MGP_C3HHeJ_G0009291.1 mouse_genomes_project 1 90689865 90690176 + Gm26037 misc_RNA misc_RNA MGP_C3HHeJ_T0023562.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184479304 184560881 + MGP_C3HHeJ_P0023562 Cnst protein_coding protein_coding MGP_C3HHeJ_T0023563.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184479433 184515919 + Cnst protein_coding retained_intron MGP_C3HHeJ_T0023564.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184479443 184535440 + Cnst protein_coding retained_intron MGP_C3HHeJ_T0023565.1 MGP_C3HHeJ_G0016622.1 mouse_genomes_project 1 184526471 184537548 + Cnst protein_coding processed_transcript MGP_C3HHeJ_T0097832.1 MGP_C3HHeJ_G0036044.1 mouse_genomes_project 1 121550232 121552032 + pseudogene pseudogene MGP_C3HHeJ_T0021775.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134444856 134492814 - MGP_C3HHeJ_P0021775 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021776.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134445299 134451048 - Mfsd4a protein_coding retained_intron MGP_C3HHeJ_T0021777.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448664 134492868 - MGP_C3HHeJ_P0021777 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021778.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448822 134492866 - MGP_C3HHeJ_P0021778 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021779.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448822 134492729 - MGP_C3HHeJ_P0021779 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021780.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134448849 134492965 - MGP_C3HHeJ_P0021780 Mfsd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021781.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134459790 134492795 - MGP_C3HHeJ_P0021781 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021782.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134459799 134492836 - MGP_C3HHeJ_P0021782 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021783.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134461833 134466902 - Mfsd4a protein_coding processed_transcript MGP_C3HHeJ_T0021784.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134461937 134492803 - MGP_C3HHeJ_P0021784 Mfsd4a protein_coding protein_coding MGP_C3HHeJ_T0021785.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134463662 134471556 - Mfsd4a protein_coding retained_intron MGP_C3HHeJ_T0021786.1 MGP_C3HHeJ_G0016234.1 mouse_genomes_project 1 134471433 134479056 - MGP_C3HHeJ_P0021786 Mfsd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018808.1 MGP_C3HHeJ_G0015636.1 mouse_genomes_project 1 15679365 15680336 - MGP_C3HHeJ_P0018808 Defb18 protein_coding protein_coding MGP_C3HHeJ_T0000545.1 MGP_C3HHeJ_G0000492.1 mouse_genomes_project 1 99230977 99232661 - TEC TEC MGP_C3HHeJ_T0018533.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2665870 2668726 + Oprk1 protein_coding retained_intron MGP_C3HHeJ_T0018534.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2665897 2683541 + MGP_C3HHeJ_P0018534 Oprk1 protein_coding protein_coding MGP_C3HHeJ_T0018535.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2665961 2680272 + MGP_C3HHeJ_P0018535 Oprk1 protein_coding protein_coding MGP_C3HHeJ_T0018536.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2666345 2681420 + MGP_C3HHeJ_P0018536 Oprk1 protein_coding protein_coding MGP_C3HHeJ_T0018537.1 MGP_C3HHeJ_G0015588.1 mouse_genomes_project 1 2673908 2680559 + Oprk1 protein_coding retained_intron MGP_C3HHeJ_T0005919.1 MGP_C3HHeJ_G0004951.1 mouse_genomes_project 1 175233801 175239390 - Gm20045 lincRNA lincRNA MGP_C3HHeJ_T0099838.1 MGP_C3HHeJ_G0038032.1 mouse_genomes_project 1 37955181 37955397 + Gm24826 snoRNA snoRNA MGP_C3HHeJ_T0000444.1 MGP_C3HHeJ_G0000391.1 mouse_genomes_project 1 54537916 54539710 - TEC TEC MGP_C3HHeJ_T0011976.1 MGP_C3HHeJ_G0010080.1 mouse_genomes_project 1 62497778 62498865 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019768.1 MGP_C3HHeJ_G0015825.1 mouse_genomes_project 1 58207359 58217698 + MGP_C3HHeJ_P0019768 Ndufb3 protein_coding protein_coding MGP_C3HHeJ_T0002857.1 MGP_C3HHeJ_G0002692.1 mouse_genomes_project 1 163412881 163416234 - Gm38039 antisense antisense MGP_C3HHeJ_T0005988.1 MGP_C3HHeJ_G0005004.1 mouse_genomes_project 1 198940763 198943701 - 4631405K08Rik lincRNA lincRNA MGP_C3HHeJ_T0009456.1 MGP_C3HHeJ_G0007589.1 mouse_genomes_project 1 165815038 165815148 + Mir199a-2 miRNA miRNA MGP_C3HHeJ_T0011761.1 MGP_C3HHeJ_G0009865.1 mouse_genomes_project 1 2696326 2696720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005865.1 MGP_C3HHeJ_G0004909.1 mouse_genomes_project 1 154933531 154939602 - 2810414N06Rik lincRNA lincRNA MGP_C3HHeJ_T0005649.1 MGP_C3HHeJ_G0004737.1 mouse_genomes_project 1 50109574 50110884 + Gm28322 lincRNA lincRNA MGP_C3HHeJ_T0000461.1 MGP_C3HHeJ_G0000408.1 mouse_genomes_project 1 61487602 61490338 + TEC TEC MGP_C3HHeJ_T0018939.1 MGP_C3HHeJ_G0015670.1 mouse_genomes_project 1 29259597 29261048 + MGP_C3HHeJ_P0018939 Pih1d3 protein_coding protein_coding MGP_C3HHeJ_T0020197.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74205207 74420118 - MGP_C3HHeJ_P0020197 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020198.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74205208 74420120 - MGP_C3HHeJ_P0020198 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020199.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74205208 74386320 - MGP_C3HHeJ_P0020199 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020200.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74208887 74223500 - MGP_C3HHeJ_P0020200 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020201.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74209069 74289860 - MGP_C3HHeJ_P0020201 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020202.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74209093 74289860 - MGP_C3HHeJ_P0020202 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020203.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74209506 74420118 - MGP_C3HHeJ_P0020203 Tns1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020204.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220114 74235994 - MGP_C3HHeJ_P0020204 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020205.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220401 74223204 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020206.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220401 74225798 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020207.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74220614 74225492 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020208.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74248348 74258066 - MGP_C3HHeJ_P0020208 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020209.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74275229 74281623 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020210.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74284258 74292803 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020211.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74284910 74310740 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020212.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74286637 74292803 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0020213.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74286742 74295887 - MGP_C3HHeJ_P0020213 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020214.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74287701 74331486 - MGP_C3HHeJ_P0020214 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020215.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74289306 74292186 - Tns1 protein_coding retained_intron MGP_C3HHeJ_T0020216.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74289775 74391787 - MGP_C3HHeJ_P0020216 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020217.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74291545 74391830 - MGP_C3HHeJ_P0020217 Tns1 protein_coding protein_coding MGP_C3HHeJ_T0020218.1 MGP_C3HHeJ_G0015908.1 mouse_genomes_project 1 74296624 74331510 - Tns1 protein_coding processed_transcript MGP_C3HHeJ_T0023066.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971284 174006830 - MGP_C3HHeJ_P0023066 Uap1 protein_coding protein_coding MGP_C3HHeJ_T0023067.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971349 174006819 - MGP_C3HHeJ_P0023067 Uap1 protein_coding protein_coding MGP_C3HHeJ_T0023068.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971350 174006819 - MGP_C3HHeJ_P0023068 Uap1 protein_coding protein_coding MGP_C3HHeJ_T0023069.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173971381 173973061 - Uap1 protein_coding retained_intron MGP_C3HHeJ_T0023070.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173979672 174006665 - Uap1 protein_coding retained_intron MGP_C3HHeJ_T0023071.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173991217 173991793 - Uap1 protein_coding processed_transcript MGP_C3HHeJ_T0023072.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173991235 174006639 - Uap1 protein_coding processed_transcript MGP_C3HHeJ_T0023073.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 173996170 174006662 - Uap1 protein_coding retained_intron MGP_C3HHeJ_T0023074.1 MGP_C3HHeJ_G0016490.1 mouse_genomes_project 1 174000099 174006759 - Uap1 protein_coding processed_transcript MGP_C3HHeJ_T0021641.1 MGP_C3HHeJ_G0016199.1 mouse_genomes_project 1 130611378 130668030 - MGP_C3HHeJ_P0021641 Dars protein_coding protein_coding MGP_C3HHeJ_T0021642.1 MGP_C3HHeJ_G0016199.1 mouse_genomes_project 1 130623519 130628129 - Dars protein_coding retained_intron MGP_C3HHeJ_T0021643.1 MGP_C3HHeJ_G0016199.1 mouse_genomes_project 1 130662788 130668039 - MGP_C3HHeJ_P0021643 Dars protein_coding protein_coding MGP_C3HHeJ_T0021713.1 MGP_C3HHeJ_G0016220.1 mouse_genomes_project 1 133573100 133596446 - MGP_C3HHeJ_P0021713 Rassf5 protein_coding protein_coding MGP_C3HHeJ_T0021714.1 MGP_C3HHeJ_G0016220.1 mouse_genomes_project 1 133575215 133642485 - MGP_C3HHeJ_P0021714 Rassf5 protein_coding protein_coding MGP_C3HHeJ_T0021715.1 MGP_C3HHeJ_G0016220.1 mouse_genomes_project 1 133603952 133642613 - Rassf5 protein_coding processed_transcript MGP_C3HHeJ_T0023791.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188497323 188520275 + MGP_C3HHeJ_P0023791 Taf1a protein_coding protein_coding MGP_C3HHeJ_T0023792.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188497327 188517935 + MGP_C3HHeJ_P0023792 Taf1a protein_coding protein_coding MGP_C3HHeJ_T0023793.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188497404 188521132 + MGP_C3HHeJ_P0023793 Taf1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0023794.1 MGP_C3HHeJ_G0016665.1 mouse_genomes_project 1 188519530 188521133 + MGP_C3HHeJ_P0023794 Taf1a protein_coding protein_coding MGP_C3HHeJ_T0009380.1 MGP_C3HHeJ_G0007513.1 mouse_genomes_project 1 11447601 11449225 + miRNA miRNA MGP_C3HHeJ_T0022884.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167930525 167949592 - MGP_C3HHeJ_P0022884 Blzf1 protein_coding protein_coding MGP_C3HHeJ_T0022885.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167932114 167949597 - MGP_C3HHeJ_P0022885 Blzf1 protein_coding protein_coding MGP_C3HHeJ_T0022886.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167932855 167949597 - MGP_C3HHeJ_P0022886 Blzf1 protein_coding protein_coding MGP_C3HHeJ_T0022887.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167941649 167949380 - Blzf1 protein_coding processed_transcript MGP_C3HHeJ_T0022889.1 MGP_C3HHeJ_G0016449.1 mouse_genomes_project 1 167947309 167949579 - Blzf1 protein_coding retained_intron MGP_C3HHeJ_T0023428.1 MGP_C3HHeJ_G0016586.1 mouse_genomes_project 1 178695518 178696442 - MGP_C3HHeJ_P0023428 Olfr231 protein_coding protein_coding MGP_C3HHeJ_T0005860.1 MGP_C3HHeJ_G0004905.1 mouse_genomes_project 1 152512390 152551258 - Gm29398 lincRNA lincRNA MGP_C3HHeJ_T0005861.1 MGP_C3HHeJ_G0004905.1 mouse_genomes_project 1 152521625 152551257 - Gm29398 lincRNA lincRNA MGP_C3HHeJ_T0097959.1 MGP_C3HHeJ_G0036171.1 mouse_genomes_project 1 83781403 83781524 - n-R5s214 rRNA rRNA MGP_C3HHeJ_T0011760.1 MGP_C3HHeJ_G0009864.1 mouse_genomes_project 1 2347783 2348825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019680.1 MGP_C3HHeJ_G0015811.1 mouse_genomes_project 1 56992701 57005109 + MGP_C3HHeJ_P0019680 9430016H08Rik protein_coding protein_coding MGP_C3HHeJ_T0099840.1 MGP_C3HHeJ_G0038034.1 mouse_genomes_project 1 38014169 38014299 - Gm23722 snoRNA snoRNA MGP_C3HHeJ_T0022869.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167685266 167707466 + MGP_C3HHeJ_P0022869 Sell protein_coding protein_coding MGP_C3HHeJ_T0022870.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167685369 167703957 + MGP_C3HHeJ_P0022870 Sell protein_coding protein_coding MGP_C3HHeJ_T0022871.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167685473 167702977 + MGP_C3HHeJ_P0022871 Sell protein_coding protein_coding MGP_C3HHeJ_T0022872.1 MGP_C3HHeJ_G0016444.1 mouse_genomes_project 1 167692246 167703281 + MGP_C3HHeJ_P0022872 Sell protein_coding protein_coding MGP_C3HHeJ_T0020679.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722854 83744075 + Daw1 protein_coding retained_intron MGP_C3HHeJ_T0020680.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722864 83775297 + MGP_C3HHeJ_P0020680 Daw1 protein_coding protein_coding MGP_C3HHeJ_T0020681.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722864 83775303 + MGP_C3HHeJ_P0020681 Daw1 protein_coding protein_coding MGP_C3HHeJ_T0020682.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722871 83775299 + MGP_C3HHeJ_P0020682 Daw1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020683.1 MGP_C3HHeJ_G0015992.1 mouse_genomes_project 1 83722883 83775303 + MGP_C3HHeJ_P0020683 Daw1 protein_coding protein_coding MGP_C3HHeJ_T0022423.1 MGP_C3HHeJ_G0016363.1 mouse_genomes_project 1 156673028 156700440 + MGP_C3HHeJ_P0022423 Shcbp1l protein_coding protein_coding MGP_C3HHeJ_T0022424.1 MGP_C3HHeJ_G0016363.1 mouse_genomes_project 1 156673038 156687788 + MGP_C3HHeJ_P0022424 Shcbp1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022425.1 MGP_C3HHeJ_G0016363.1 mouse_genomes_project 1 156693213 156696844 + Shcbp1l protein_coding retained_intron MGP_C3HHeJ_T0000571.1 MGP_C3HHeJ_G0000518.1 mouse_genomes_project 1 125621230 125622724 - TEC TEC MGP_C3HHeJ_T0023027.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171105813 171124875 + MGP_C3HHeJ_P0023027 Aldh9a1 protein_coding protein_coding MGP_C3HHeJ_T0023028.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171106058 171110248 + Aldh9a1 protein_coding processed_transcript MGP_C3HHeJ_T0023029.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171106134 171111650 + Aldh9a1 protein_coding retained_intron MGP_C3HHeJ_T0023030.1 MGP_C3HHeJ_G0016478.1 mouse_genomes_project 1 171120508 171123990 + Aldh9a1 protein_coding retained_intron MGP_C3HHeJ_T0019571.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569673 52582393 + MGP_C3HHeJ_P0019571 Osgepl1 protein_coding protein_coding MGP_C3HHeJ_T0019572.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569703 52582224 + MGP_C3HHeJ_P0019572 Osgepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019573.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569706 52572682 + Osgepl1 protein_coding processed_transcript MGP_C3HHeJ_T0019574.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569706 52574708 + Osgepl1 protein_coding retained_intron MGP_C3HHeJ_T0019575.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569712 52580114 + MGP_C3HHeJ_P0019575 Osgepl1 protein_coding protein_coding MGP_C3HHeJ_T0019576.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52569722 52582217 + MGP_C3HHeJ_P0019576 Osgepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019577.1 MGP_C3HHeJ_G0015789.1 mouse_genomes_project 1 52575758 52582225 + Osgepl1 protein_coding retained_intron MGP_C3HHeJ_T0021903.1 MGP_C3HHeJ_G0016259.1 mouse_genomes_project 1 136105149 136151026 - MGP_C3HHeJ_P0021903 Gm38394 protein_coding protein_coding MGP_C3HHeJ_T0021834.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135018266 135162002 - MGP_C3HHeJ_P0021834 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021835.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019061 135162082 - MGP_C3HHeJ_P0021835 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021836.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019351 135196649 - MGP_C3HHeJ_P0021836 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021837.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019437 135161978 - MGP_C3HHeJ_P0021837 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021838.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135019440 135087914 - MGP_C3HHeJ_P0021838 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021839.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135025383 135037041 - Nfasc protein_coding processed_transcript MGP_C3HHeJ_T0021840.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135051034 135196683 - MGP_C3HHeJ_P0021840 Nfasc protein_coding protein_coding MGP_C3HHeJ_T0021841.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135052832 135056358 - Nfasc protein_coding retained_intron MGP_C3HHeJ_T0021842.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135070544 135075681 - Nfasc protein_coding retained_intron MGP_C3HHeJ_T0021843.1 MGP_C3HHeJ_G0016245.1 mouse_genomes_project 1 135118487 135196664 - Nfasc protein_coding processed_transcript MGP_C3HHeJ_T0011879.1 MGP_C3HHeJ_G0009983.1 mouse_genomes_project 1 33182216 33182445 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018904.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729700 22894034 - MGP_C3HHeJ_P0018904 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018905.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729774 23508838 - MGP_C3HHeJ_P0018905 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018906.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729774 23512190 - MGP_C3HHeJ_P0018906 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018907.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729774 23512384 - MGP_C3HHeJ_P0018907 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018908.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729902 23509459 - MGP_C3HHeJ_P0018908 Adgrb3 protein_coding protein_coding MGP_C3HHeJ_T0018909.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22729915 22894308 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018910.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22754309 22894254 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018911.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22787542 22869460 - Adgrb3 protein_coding processed_transcript MGP_C3HHeJ_T0018912.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22864986 22870430 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018913.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 22883283 22894035 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0018914.1 MGP_C3HHeJ_G0015663.1 mouse_genomes_project 1 23173006 23509046 - Adgrb3 protein_coding retained_intron MGP_C3HHeJ_T0098613.1 MGP_C3HHeJ_G0036807.1 mouse_genomes_project 1 47558524 47558645 - Gm23240 snRNA snRNA MGP_C3HHeJ_T0009409.1 MGP_C3HHeJ_G0007542.1 mouse_genomes_project 1 63961101 63961165 - Mir6899 miRNA miRNA MGP_C3HHeJ_T0020470.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75596961 75606726 - MGP_C3HHeJ_P0020470 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020471.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75596961 75606704 - MGP_C3HHeJ_P0020471 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020472.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75597005 75606060 - MGP_C3HHeJ_P0020472 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020473.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75597630 75606012 - MGP_C3HHeJ_P0020473 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020474.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75597630 75606216 - MGP_C3HHeJ_P0020474 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020475.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75598248 75602825 - Dnpep protein_coding retained_intron MGP_C3HHeJ_T0020476.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75601533 75606476 - Dnpep protein_coding retained_intron MGP_C3HHeJ_T0020477.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75603429 75605870 - MGP_C3HHeJ_P0020477 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020478.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75603432 75606088 - MGP_C3HHeJ_P0020478 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020479.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75604267 75606380 - MGP_C3HHeJ_P0020479 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020480.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605049 75606514 - MGP_C3HHeJ_P0020480 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020481.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605413 75606439 - Dnpep protein_coding retained_intron MGP_C3HHeJ_T0020482.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605436 75607057 - MGP_C3HHeJ_P0020482 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0020483.1 MGP_C3HHeJ_G0015953.1 mouse_genomes_project 1 75605620 75606449 - MGP_C3HHeJ_P0020483 Dnpep protein_coding protein_coding MGP_C3HHeJ_T0012048.1 MGP_C3HHeJ_G0010152.1 mouse_genomes_project 1 94159676 94163052 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005965.1 MGP_C3HHeJ_G0004985.1 mouse_genomes_project 1 190626370 190634819 - Gm2061 lincRNA lincRNA MGP_C3HHeJ_T0012033.1 MGP_C3HHeJ_G0010137.1 mouse_genomes_project 1 87029865 87030195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023657.1 MGP_C3HHeJ_G0016637.1 mouse_genomes_project 1 185854358 185872530 + MGP_C3HHeJ_P0023657 Sde2 protein_coding protein_coding MGP_C3HHeJ_T0023658.1 MGP_C3HHeJ_G0016637.1 mouse_genomes_project 1 185866516 185870670 + Sde2 protein_coding retained_intron MGP_C3HHeJ_T0021859.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506608 135528232 + MGP_C3HHeJ_P0021859 Pik3c2b protein_coding protein_coding MGP_C3HHeJ_T0021860.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506953 135529036 + Pik3c2b protein_coding retained_intron MGP_C3HHeJ_T0021861.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506953 135543851 + Pik3c2b protein_coding retained_intron MGP_C3HHeJ_T0021862.1 MGP_C3HHeJ_G0016248.1 mouse_genomes_project 1 135506953 135572504 + MGP_C3HHeJ_P0021862 Pik3c2b protein_coding protein_coding MGP_C3HHeJ_T0012039.1 MGP_C3HHeJ_G0010143.1 mouse_genomes_project 1 89711017 89711476 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005599.1 MGP_C3HHeJ_G0004705.1 mouse_genomes_project 1 32510715 32511590 - Gm37958 lincRNA lincRNA MGP_C3HHeJ_T0018962.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31923332 31976130 - MGP_C3HHeJ_P0018962 Zfp451 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018963.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31923332 31976272 - MGP_C3HHeJ_P0018963 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018964.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31939312 31967132 - MGP_C3HHeJ_P0018964 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018965.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31940824 31945706 - MGP_C3HHeJ_P0018965 Zfp451 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018966.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31940957 31976171 - MGP_C3HHeJ_P0018966 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018967.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31943946 31975956 - Zfp451 protein_coding processed_transcript MGP_C3HHeJ_T0018968.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31948210 31962507 - Zfp451 protein_coding processed_transcript MGP_C3HHeJ_T0018969.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31953876 31976315 - MGP_C3HHeJ_P0018969 Zfp451 protein_coding protein_coding MGP_C3HHeJ_T0018970.1 MGP_C3HHeJ_G0015676.1 mouse_genomes_project 1 31975271 31976340 - Zfp451 protein_coding retained_intron MGP_C3HHeJ_T0020848.1 MGP_C3HHeJ_G0016028.1 mouse_genomes_project 1 88074214 88122619 + MGP_C3HHeJ_P0020848 Efhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020849.1 MGP_C3HHeJ_G0016028.1 mouse_genomes_project 1 88074214 88122622 + MGP_C3HHeJ_P0020849 Efhd1 protein_coding protein_coding MGP_C3HHeJ_T0020850.1 MGP_C3HHeJ_G0016028.1 mouse_genomes_project 1 88121008 88121525 + Efhd1 protein_coding processed_transcript MGP_C3HHeJ_T0098618.1 MGP_C3HHeJ_G0036812.1 mouse_genomes_project 1 61312618 61312721 + Gm25839 snRNA snRNA MGP_C3HHeJ_T0000480.1 MGP_C3HHeJ_G0000427.1 mouse_genomes_project 1 68821824 68824197 - TEC TEC MGP_C3HHeJ_T0012210.1 MGP_C3HHeJ_G0010314.1 mouse_genomes_project 1 165908568 165908998 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000664.1 MGP_C3HHeJ_G0000609.1 mouse_genomes_project 1 159913127 159919650 + TEC TEC MGP_C3HHeJ_T0021121.1 MGP_C3HHeJ_G0016087.1 mouse_genomes_project 1 93748719 93749717 + MGP_C3HHeJ_P0021121 Olfr1411 protein_coding protein_coding MGP_C3HHeJ_T0022217.1 MGP_C3HHeJ_G0016324.1 mouse_genomes_project 1 142279363 142292504 - MGP_C3HHeJ_P0022217 protein_coding protein_coding MGP_C3HHeJ_T0022218.1 MGP_C3HHeJ_G0016324.1 mouse_genomes_project 1 142282966 142285859 - MGP_C3HHeJ_P0022218 protein_coding protein_coding MGP_C3HHeJ_T0011994.1 MGP_C3HHeJ_G0010098.1 mouse_genomes_project 1 66034409 66034821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005657.1 MGP_C3HHeJ_G0004743.1 mouse_genomes_project 1 51809414 51819694 - Gm28178 lincRNA lincRNA MGP_C3HHeJ_T0002866.1 MGP_C3HHeJ_G0002699.1 mouse_genomes_project 1 165814847 165822760 + Dnm3os antisense antisense MGP_C3HHeJ_T0002867.1 MGP_C3HHeJ_G0002699.1 mouse_genomes_project 1 165814847 165822762 + Dnm3os antisense antisense MGP_C3HHeJ_T0002868.1 MGP_C3HHeJ_G0002699.1 mouse_genomes_project 1 165814888 165819325 + Dnm3os antisense antisense MGP_C3HHeJ_T0011853.1 MGP_C3HHeJ_G0009957.1 mouse_genomes_project 1 29194659 29194884 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012047.1 MGP_C3HHeJ_G0010151.1 mouse_genomes_project 1 93530018 93530430 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000488.1 MGP_C3HHeJ_G0000435.1 mouse_genomes_project 1 74616330 74619191 + TEC TEC MGP_C3HHeJ_T0023818.1 MGP_C3HHeJ_G0016673.1 mouse_genomes_project 1 190038101 190145308 - MGP_C3HHeJ_P0023818 Mark1 protein_coding protein_coding MGP_C3HHeJ_T0023819.1 MGP_C3HHeJ_G0016673.1 mouse_genomes_project 1 190060818 190145213 - MGP_C3HHeJ_P0023819 Mark1 protein_coding protein_coding MGP_C3HHeJ_T0005930.1 MGP_C3HHeJ_G0004961.1 mouse_genomes_project 1 185755393 185761899 - Gm38293 lincRNA lincRNA MGP_C3HHeJ_T0005709.1 MGP_C3HHeJ_G0004782.1 mouse_genomes_project 1 73683163 73698721 - Pinc lincRNA lincRNA MGP_C3HHeJ_T0005710.1 MGP_C3HHeJ_G0004782.1 mouse_genomes_project 1 73688479 73698721 - Pinc lincRNA lincRNA MGP_C3HHeJ_T0022888.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167946228 168084798 + MGP_C3HHeJ_P0022888 Nme7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022890.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167949779 168084373 + MGP_C3HHeJ_P0022890 Nme7 protein_coding protein_coding MGP_C3HHeJ_T0022891.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167949834 167993638 + Nme7 protein_coding processed_transcript MGP_C3HHeJ_T0022892.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167949855 167955433 + Nme7 protein_coding retained_intron MGP_C3HHeJ_T0022893.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167950180 168084367 + MGP_C3HHeJ_P0022893 Nme7 protein_coding protein_coding MGP_C3HHeJ_T0022894.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167950204 167978445 + Nme7 protein_coding retained_intron MGP_C3HHeJ_T0022895.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167955144 167992384 + MGP_C3HHeJ_P0022895 Nme7 protein_coding protein_coding MGP_C3HHeJ_T0022896.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 167989421 168026835 + Nme7 protein_coding retained_intron MGP_C3HHeJ_T0022897.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 168018456 168084309 + Nme7 protein_coding processed_transcript MGP_C3HHeJ_T0022898.1 MGP_C3HHeJ_G0016450.1 mouse_genomes_project 1 168018456 168084365 + Nme7 protein_coding processed_transcript MGP_C3HHeJ_T0002889.1 MGP_C3HHeJ_G0002716.1 mouse_genomes_project 1 176389357 176392120 - Gm37756 antisense antisense MGP_C3HHeJ_T0012084.1 MGP_C3HHeJ_G0010188.1 mouse_genomes_project 1 110160343 110162812 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005678.1 MGP_C3HHeJ_G0004760.1 mouse_genomes_project 1 61448754 61453466 - 4930587A21Rik lincRNA lincRNA MGP_C3HHeJ_T0005985.1 MGP_C3HHeJ_G0005002.1 mouse_genomes_project 1 198252713 198253787 + 1700065J18Rik lincRNA lincRNA MGP_C3HHeJ_T0005986.1 MGP_C3HHeJ_G0005002.1 mouse_genomes_project 1 198252723 198253793 + 1700065J18Rik lincRNA lincRNA MGP_C3HHeJ_T0022551.1 MGP_C3HHeJ_G0016386.1 mouse_genomes_project 1 159430624 159519504 - MGP_C3HHeJ_P0022551 Fam163a protein_coding protein_coding MGP_C3HHeJ_T0000613.1 MGP_C3HHeJ_G0000559.1 mouse_genomes_project 1 138659583 138661836 + TEC TEC MGP_C3HHeJ_T0000455.1 MGP_C3HHeJ_G0000402.1 mouse_genomes_project 1 60174985 60176042 + TEC TEC MGP_C3HHeJ_T0099877.1 MGP_C3HHeJ_G0038071.1 mouse_genomes_project 1 114351483 114351619 + Gm22331 snoRNA snoRNA MGP_C3HHeJ_T0005591.1 MGP_C3HHeJ_G0004698.1 mouse_genomes_project 1 22619125 22620893 - Gm28237 lincRNA lincRNA MGP_C3HHeJ_T0005592.1 MGP_C3HHeJ_G0004698.1 mouse_genomes_project 1 22619912 22621075 - Gm28237 lincRNA lincRNA MGP_C3HHeJ_T0002923.1 MGP_C3HHeJ_G0002746.1 mouse_genomes_project 1 196395865 196396702 + A230020J21Rik antisense antisense MGP_C3HHeJ_T0002924.1 MGP_C3HHeJ_G0002746.1 mouse_genomes_project 1 196395866 196400345 + A230020J21Rik antisense antisense MGP_C3HHeJ_T0019279.1 MGP_C3HHeJ_G0015732.1 mouse_genomes_project 1 38108737 38165557 - MGP_C3HHeJ_P0019279 Rfx8 protein_coding protein_coding MGP_C3HHeJ_T0019280.1 MGP_C3HHeJ_G0015732.1 mouse_genomes_project 1 38124303 38135336 - Rfx8 protein_coding processed_transcript MGP_C3HHeJ_T0021130.1 MGP_C3HHeJ_G0016091.1 mouse_genomes_project 1 93797777 93802401 - MGP_C3HHeJ_P0021130 Otos protein_coding protein_coding MGP_C3HHeJ_T0021131.1 MGP_C3HHeJ_G0016091.1 mouse_genomes_project 1 93797778 93801814 - Otos protein_coding retained_intron MGP_C3HHeJ_T0000640.1 MGP_C3HHeJ_G0000585.1 mouse_genomes_project 1 149455468 149461231 - TEC TEC MGP_C3HHeJ_T0098601.1 MGP_C3HHeJ_G0036795.1 mouse_genomes_project 1 17908618 17908720 - Gm24162 snRNA snRNA MGP_C3HHeJ_T0018679.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565947 8762813 + MGP_C3HHeJ_P0018679 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018680.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565947 9132741 + MGP_C3HHeJ_P0018680 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018681.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565954 8671955 + A830018L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0018682.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565954 8693193 + A830018L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0018683.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8565954 9090174 + MGP_C3HHeJ_P0018683 A830018L16Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018684.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8566112 8760890 + MGP_C3HHeJ_P0018684 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018685.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8566352 9132237 + MGP_C3HHeJ_P0018685 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018686.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8566352 9132237 + MGP_C3HHeJ_P0018686 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018687.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8671916 8760506 + MGP_C3HHeJ_P0018687 A830018L16Rik protein_coding protein_coding MGP_C3HHeJ_T0018688.1 MGP_C3HHeJ_G0015609.1 mouse_genomes_project 1 8739765 8757186 + A830018L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0018867.1 MGP_C3HHeJ_G0015654.1 mouse_genomes_project 1 20682607 20684388 - MGP_C3HHeJ_P0018867 4933415F23Rik protein_coding protein_coding MGP_C3HHeJ_T0011807.1 MGP_C3HHeJ_G0009911.1 mouse_genomes_project 1 14144092 14144510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023321.1 MGP_C3HHeJ_G0016545.1 mouse_genomes_project 1 176512959 176522906 - MGP_C3HHeJ_P0023321 Casq1 protein_coding protein_coding MGP_C3HHeJ_T0023322.1 MGP_C3HHeJ_G0016545.1 mouse_genomes_project 1 176512960 176517020 - Casq1 protein_coding retained_intron MGP_C3HHeJ_T0023323.1 MGP_C3HHeJ_G0016545.1 mouse_genomes_project 1 176518205 176522753 - MGP_C3HHeJ_P0023323 Casq1 protein_coding protein_coding MGP_C3HHeJ_T0022115.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138655150 138724890 + MGP_C3HHeJ_P0022115 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022116.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138655184 138724895 + MGP_C3HHeJ_P0022116 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022117.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138655301 138725182 + MGP_C3HHeJ_P0022117 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022118.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138676039 138724889 + MGP_C3HHeJ_P0022118 Cacna1s protein_coding protein_coding MGP_C3HHeJ_T0022119.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138710727 138717376 + Cacna1s protein_coding retained_intron MGP_C3HHeJ_T0022120.1 MGP_C3HHeJ_G0016304.1 mouse_genomes_project 1 138722615 138724889 + Cacna1s protein_coding processed_transcript MGP_C3HHeJ_T0101563.1 MGP_C3HHeJ_G0039529.1 mouse_genomes_project 1 89048158 89048372 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0020684.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83814391 83985964 - MGP_C3HHeJ_P0020684 Sphkap protein_coding protein_coding MGP_C3HHeJ_T0020685.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83815690 83985771 - MGP_C3HHeJ_P0020685 Sphkap protein_coding unknown_likely_coding MGP_C3HHeJ_T0020686.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83815694 83839351 - MGP_C3HHeJ_P0020686 Sphkap protein_coding protein_coding MGP_C3HHeJ_T0020687.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83825326 83985929 - Sphkap protein_coding retained_intron MGP_C3HHeJ_T0020688.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83907366 83985903 - Sphkap protein_coding retained_intron MGP_C3HHeJ_T0020689.1 MGP_C3HHeJ_G0015993.1 mouse_genomes_project 1 83957837 83985929 - Sphkap protein_coding retained_intron MGP_C3HHeJ_T0000326.1 MGP_C3HHeJ_G0000276.1 mouse_genomes_project 1 734946 736580 + TEC TEC MGP_C3HHeJ_T0012204.1 MGP_C3HHeJ_G0010308.1 mouse_genomes_project 1 162847615 162848121 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000511.1 MGP_C3HHeJ_G0000458.1 mouse_genomes_project 1 84736038 84737682 - TEC TEC MGP_C3HHeJ_T0000740.1 MGP_C3HHeJ_G0000684.1 mouse_genomes_project 1 187037209 187040453 - TEC TEC MGP_C3HHeJ_T0012235.1 MGP_C3HHeJ_G0010339.1 mouse_genomes_project 1 177096048 177096479 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012097.1 MGP_C3HHeJ_G0010201.1 mouse_genomes_project 1 114289603 114290272 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005885.1 MGP_C3HHeJ_G0004924.1 mouse_genomes_project 1 163553157 163556408 - 4930562F07Rik lincRNA lincRNA MGP_C3HHeJ_T0005886.1 MGP_C3HHeJ_G0004924.1 mouse_genomes_project 1 163553157 163556341 - 4930562F07Rik lincRNA lincRNA MGP_C3HHeJ_T0005887.1 MGP_C3HHeJ_G0004924.1 mouse_genomes_project 1 163553392 163556365 - 4930562F07Rik lincRNA lincRNA MGP_C3HHeJ_T0022669.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522264 163525711 + 4930523C07Rik protein_coding retained_intron MGP_C3HHeJ_T0022670.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522266 163549943 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022671.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522266 163558630 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022672.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522287 163551202 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022673.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163522329 163549912 + 4930523C07Rik protein_coding lincRNA MGP_C3HHeJ_T0022674.1 MGP_C3HHeJ_G0016405.1 mouse_genomes_project 1 163553584 163553884 + MGP_C3HHeJ_P0022674 4930523C07Rik protein_coding protein_coding MGP_C3HHeJ_T0002916.1 MGP_C3HHeJ_G0002740.1 mouse_genomes_project 1 193247362 193249778 - 9330162B11Rik antisense antisense MGP_C3HHeJ_T0005651.1 MGP_C3HHeJ_G0004739.1 mouse_genomes_project 1 50681889 50682889 - 1700072G22Rik lincRNA lincRNA MGP_C3HHeJ_T0024044.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198302853 198449513 - MGP_C3HHeJ_P0024044 Syt14 protein_coding protein_coding MGP_C3HHeJ_T0024045.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198307606 198449400 - MGP_C3HHeJ_P0024045 Syt14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024046.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198308830 198449455 - MGP_C3HHeJ_P0024046 Syt14 protein_coding protein_coding MGP_C3HHeJ_T0024047.1 MGP_C3HHeJ_G0016717.1 mouse_genomes_project 1 198343480 198449382 - Syt14 protein_coding retained_intron MGP_C3HHeJ_T0020909.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88658979 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020910.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88673810 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020911.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88674296 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020912.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88651295 + Sag protein_coding retained_intron MGP_C3HHeJ_T0020913.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88693209 + MGP_C3HHeJ_P0020913 Sag protein_coding protein_coding MGP_C3HHeJ_T0020914.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88630998 88693344 + MGP_C3HHeJ_P0020914 Sag protein_coding protein_coding MGP_C3HHeJ_T0020915.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88645595 88658153 + Sag protein_coding processed_transcript MGP_C3HHeJ_T0020916.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88654893 88658163 + Sag protein_coding processed_transcript MGP_C3HHeJ_T0020917.1 MGP_C3HHeJ_G0016036.1 mouse_genomes_project 1 88660166 88674314 + Sag protein_coding retained_intron MGP_C3HHeJ_T0022948.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169342585 169415634 - MGP_C3HHeJ_P0022948 Rcsd1 protein_coding protein_coding MGP_C3HHeJ_T0022949.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169345016 169415596 - MGP_C3HHeJ_P0022949 Rcsd1 protein_coding protein_coding MGP_C3HHeJ_T0022950.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169366790 169416941 - MGP_C3HHeJ_P0022950 Rcsd1 protein_coding protein_coding MGP_C3HHeJ_T0022951.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169412069 169417274 - Rcsd1 protein_coding retained_intron MGP_C3HHeJ_T0022952.1 MGP_C3HHeJ_G0016462.1 mouse_genomes_project 1 169415986 169417305 - Rcsd1 protein_coding processed_transcript MGP_C3HHeJ_T0000641.1 MGP_C3HHeJ_G0000586.1 mouse_genomes_project 1 150123377 150125277 + TEC TEC MGP_C3HHeJ_T0098636.1 MGP_C3HHeJ_G0036830.1 mouse_genomes_project 1 95009496 95009598 - Gm22089 snRNA snRNA MGP_C3HHeJ_T0101603.1 MGP_C3HHeJ_G0039569.1 mouse_genomes_project 1 181489765 181489925 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099830.1 MGP_C3HHeJ_G0038024.1 mouse_genomes_project 1 18309627 18309759 - Gm24723 snoRNA snoRNA MGP_C3HHeJ_T0000502.1 MGP_C3HHeJ_G0000449.1 mouse_genomes_project 1 81195400 81197256 - TEC TEC MGP_C3HHeJ_T0009413.1 MGP_C3HHeJ_G0007546.1 mouse_genomes_project 1 74506313 74506380 - Mir1928 miRNA miRNA MGP_C3HHeJ_T0005818.1 MGP_C3HHeJ_G0004869.1 mouse_genomes_project 1 124300277 124350715 + Gm28590 lincRNA lincRNA MGP_C3HHeJ_T0012125.1 MGP_C3HHeJ_G0010229.1 mouse_genomes_project 1 125277756 125279054 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101556.1 MGP_C3HHeJ_G0039522.1 mouse_genomes_project 1 75805172 75805455 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023324.1 MGP_C3HHeJ_G0016546.1 mouse_genomes_project 1 176527896 176564116 - MGP_C3HHeJ_P0023324 Atp1a4 protein_coding protein_coding MGP_C3HHeJ_T0023325.1 MGP_C3HHeJ_G0016546.1 mouse_genomes_project 1 176552610 176559646 - Atp1a4 protein_coding processed_transcript MGP_C3HHeJ_T0023049.1 MGP_C3HHeJ_G0016485.1 mouse_genomes_project 1 173453998 173496678 + MGP_C3HHeJ_P0023049 Rgs5 protein_coding protein_coding MGP_C3HHeJ_T0023050.1 MGP_C3HHeJ_G0016485.1 mouse_genomes_project 1 173454019 173482978 + MGP_C3HHeJ_P0023050 Rgs5 protein_coding protein_coding MGP_C3HHeJ_T0011877.1 MGP_C3HHeJ_G0009981.1 mouse_genomes_project 1 32968493 32968848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016859.1 MGP_C3HHeJ_G0014884.1 mouse_genomes_project 1 174741836 174754595 + Gm9929 processed_transcript processed_transcript MGP_C3HHeJ_T0018847.1 MGP_C3HHeJ_G0015649.1 mouse_genomes_project 1 18868584 18884437 + MGP_C3HHeJ_P0018847 protein_coding protein_coding MGP_C3HHeJ_T0016824.1 MGP_C3HHeJ_G0014878.1 mouse_genomes_project 1 156640223 156650043 - processed_transcript processed_transcript MGP_C3HHeJ_T0016825.1 MGP_C3HHeJ_G0014878.1 mouse_genomes_project 1 156640223 156644113 - processed_transcript retained_intron MGP_C3HHeJ_T0016826.1 MGP_C3HHeJ_G0014878.1 mouse_genomes_project 1 156642621 156650184 - processed_transcript lincRNA MGP_C3HHeJ_T0021818.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925361 134952374 + MGP_C3HHeJ_P0021818 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021819.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925431 134953543 + MGP_C3HHeJ_P0021819 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021820.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925487 134938477 + MGP_C3HHeJ_P0021820 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021821.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925505 134951676 + MGP_C3HHeJ_P0021821 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021822.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134925638 134938561 + MGP_C3HHeJ_P0021822 Rbbp5 protein_coding protein_coding MGP_C3HHeJ_T0021823.1 MGP_C3HHeJ_G0016242.1 mouse_genomes_project 1 134951616 134953539 + Rbbp5 protein_coding retained_intron MGP_C3HHeJ_T0005745.1 MGP_C3HHeJ_G0004809.1 mouse_genomes_project 1 89416614 89436133 - Gm29538 lincRNA lincRNA MGP_C3HHeJ_T0020967.1 MGP_C3HHeJ_G0016054.1 mouse_genomes_project 1 89652326 89682949 - MGP_C3HHeJ_P0020967 Arl4c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020968.1 MGP_C3HHeJ_G0016054.1 mouse_genomes_project 1 89652328 89682949 - MGP_C3HHeJ_P0020968 Arl4c protein_coding protein_coding MGP_C3HHeJ_T0020969.1 MGP_C3HHeJ_G0016054.1 mouse_genomes_project 1 89679297 89683294 - MGP_C3HHeJ_P0020969 Arl4c protein_coding protein_coding MGP_C3HHeJ_T0019652.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54748541 54804281 - MGP_C3HHeJ_P0019652 Boll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019653.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54770506 54867310 - MGP_C3HHeJ_P0019653 Boll protein_coding protein_coding MGP_C3HHeJ_T0019654.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54804171 54869295 - MGP_C3HHeJ_P0019654 Boll protein_coding protein_coding MGP_C3HHeJ_T0019655.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54804171 54869888 - MGP_C3HHeJ_P0019655 Boll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019656.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54804171 54869888 - MGP_C3HHeJ_P0019656 Boll protein_coding protein_coding MGP_C3HHeJ_T0019657.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54852121 54870038 - MGP_C3HHeJ_P0019657 Boll protein_coding protein_coding MGP_C3HHeJ_T0019658.1 MGP_C3HHeJ_G0015805.1 mouse_genomes_project 1 54854902 54867310 - Boll protein_coding processed_transcript MGP_C3HHeJ_T0005761.1 MGP_C3HHeJ_G0004824.1 mouse_genomes_project 1 92368443 92375671 - Gm26683 lincRNA lincRNA MGP_C3HHeJ_T0099902.1 MGP_C3HHeJ_G0038096.1 mouse_genomes_project 1 164589940 164590006 + Snord78 snoRNA snoRNA MGP_C3HHeJ_T0022254.1 MGP_C3HHeJ_G0016331.1 mouse_genomes_project 1 146682017 146708456 - MGP_C3HHeJ_P0022254 Trove2 protein_coding protein_coding MGP_C3HHeJ_T0022255.1 MGP_C3HHeJ_G0016331.1 mouse_genomes_project 1 146687146 146708310 - Trove2 protein_coding retained_intron MGP_C3HHeJ_T0101105.1 MGP_C3HHeJ_G0039286.1 mouse_genomes_project 1 190667714 190679856 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101106.1 MGP_C3HHeJ_G0039286.1 mouse_genomes_project 1 190679084 190679714 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101104.1 MGP_C3HHeJ_G0039285.1 mouse_genomes_project 1 188308206 188308890 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0098320.1 MGP_C3HHeJ_G0036531.1 mouse_genomes_project 1 83271734 83273669 + sense_intronic sense_intronic MGP_C3HHeJ_T0002737.1 MGP_C3HHeJ_G0002602.1 mouse_genomes_project 1 50437073 50550376 - 9330175M20Rik antisense antisense MGP_C3HHeJ_T0002890.1 MGP_C3HHeJ_G0002717.1 mouse_genomes_project 1 176516085 176516745 + Gm17224 antisense antisense MGP_C3HHeJ_T0000583.1 MGP_C3HHeJ_G0000530.1 mouse_genomes_project 1 130336333 130340216 - TEC TEC MGP_C3HHeJ_T0002758.1 MGP_C3HHeJ_G0002618.1 mouse_genomes_project 1 66299666 66306156 - Gm10558 antisense antisense MGP_C3HHeJ_T0002860.1 MGP_C3HHeJ_G0002695.1 mouse_genomes_project 1 164593252 164594039 + Gm37634 antisense antisense MGP_C3HHeJ_T0012094.1 MGP_C3HHeJ_G0010198.1 mouse_genomes_project 1 113919552 113923767 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005639.1 MGP_C3HHeJ_G0004728.1 mouse_genomes_project 1 41358525 41360695 + Dalir lincRNA lincRNA MGP_C3HHeJ_T0019988.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63654545 63677996 + MGP_C3HHeJ_P0019988 Fastkd2 protein_coding protein_coding MGP_C3HHeJ_T0019989.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63654572 63660445 + Fastkd2 protein_coding retained_intron MGP_C3HHeJ_T0019990.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63654574 63675879 + Fastkd2 protein_coding retained_intron MGP_C3HHeJ_T0019991.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63660311 63671400 + Fastkd2 protein_coding processed_transcript MGP_C3HHeJ_T0019992.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63671363 63673618 + Fastkd2 protein_coding retained_intron MGP_C3HHeJ_T0019993.1 MGP_C3HHeJ_G0015862.1 mouse_genomes_project 1 63674562 63675806 + Fastkd2 protein_coding processed_transcript MGP_C3HHeJ_T0000411.1 MGP_C3HHeJ_G0000358.1 mouse_genomes_project 1 32450289 32451536 - TEC TEC MGP_C3HHeJ_T0012107.1 MGP_C3HHeJ_G0010211.1 mouse_genomes_project 1 120473171 120474159 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019800.1 MGP_C3HHeJ_G0015831.1 mouse_genomes_project 1 58787429 58833712 - MGP_C3HHeJ_P0019800 Als2cr11 protein_coding protein_coding MGP_C3HHeJ_T0019801.1 MGP_C3HHeJ_G0015831.1 mouse_genomes_project 1 58806512 58821660 - Als2cr11 protein_coding processed_transcript MGP_C3HHeJ_T0009417.1 MGP_C3HHeJ_G0007550.1 mouse_genomes_project 1 75494715 75494831 - Gm27943 miRNA miRNA MGP_C3HHeJ_T0000759.1 MGP_C3HHeJ_G0000702.1 mouse_genomes_project 1 193406198 193408635 + TEC TEC MGP_C3HHeJ_T0018840.1 MGP_C3HHeJ_G0015647.1 mouse_genomes_project 1 18702903 18715975 + MGP_C3HHeJ_P0018840 Tmem14a protein_coding protein_coding MGP_C3HHeJ_T0018841.1 MGP_C3HHeJ_G0015647.1 mouse_genomes_project 1 18702990 18715972 + MGP_C3HHeJ_P0018841 Tmem14a protein_coding protein_coding MGP_C3HHeJ_T0098666.1 MGP_C3HHeJ_G0036860.1 mouse_genomes_project 1 173618544 173618651 - Gm22114 snRNA snRNA MGP_C3HHeJ_T0000609.1 MGP_C3HHeJ_G0000555.1 mouse_genomes_project 1 137368024 137375634 - TEC TEC MGP_C3HHeJ_T0005610.1 MGP_C3HHeJ_G0004714.1 mouse_genomes_project 1 34384638 34393760 + Gm33280 lincRNA lincRNA MGP_C3HHeJ_T0020825.1 MGP_C3HHeJ_G0016021.1 mouse_genomes_project 1 87903527 87907132 - MGP_C3HHeJ_P0020825 Alpi protein_coding protein_coding MGP_C3HHeJ_T0099858.1 MGP_C3HHeJ_G0038052.1 mouse_genomes_project 1 66852624 66852754 + Gm25832 snoRNA snoRNA MGP_C3HHeJ_T0005700.1 MGP_C3HHeJ_G0004776.1 mouse_genomes_project 1 72115740 72144010 - Gm28818 lincRNA lincRNA MGP_C3HHeJ_T0005701.1 MGP_C3HHeJ_G0004776.1 mouse_genomes_project 1 72119678 72121870 - Gm28818 lincRNA lincRNA MGP_C3HHeJ_T0000635.1 MGP_C3HHeJ_G0000580.1 mouse_genomes_project 1 144237136 144237582 + TEC TEC MGP_C3HHeJ_T0000469.1 MGP_C3HHeJ_G0000416.1 mouse_genomes_project 1 66678565 66680313 - TEC TEC MGP_C3HHeJ_T0018948.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877491 31882414 + Rab23 protein_coding processed_transcript MGP_C3HHeJ_T0018949.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877491 31885468 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018950.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877499 31901581 + MGP_C3HHeJ_P0018950 Rab23 protein_coding protein_coding MGP_C3HHeJ_T0018951.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877513 31901574 + MGP_C3HHeJ_P0018951 Rab23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018952.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877514 31884053 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018953.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31877742 31894459 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018954.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31878011 31901578 + MGP_C3HHeJ_P0018954 Rab23 protein_coding protein_coding MGP_C3HHeJ_T0018955.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31893632 31899728 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018956.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31895682 31898387 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0018957.1 MGP_C3HHeJ_G0015674.1 mouse_genomes_project 1 31897153 31899789 + Rab23 protein_coding retained_intron MGP_C3HHeJ_T0000487.1 MGP_C3HHeJ_G0000434.1 mouse_genomes_project 1 74596097 74596416 - TEC TEC MGP_C3HHeJ_T0000547.1 MGP_C3HHeJ_G0000494.1 mouse_genomes_project 1 105276324 105279205 + TEC TEC MGP_C3HHeJ_T0012022.1 MGP_C3HHeJ_G0010126.1 mouse_genomes_project 1 82306152 82306858 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018525.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2159079 2248151 + MGP_C3HHeJ_P0018525 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018526.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172678 2248340 + MGP_C3HHeJ_P0018526 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018527.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172708 2185372 + MGP_C3HHeJ_P0018527 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018528.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172722 2230854 + Atp6v1h protein_coding retained_intron MGP_C3HHeJ_T0018529.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172730 2176386 + Atp6v1h protein_coding retained_intron MGP_C3HHeJ_T0018530.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172730 2185303 + MGP_C3HHeJ_P0018530 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018531.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172752 2248230 + MGP_C3HHeJ_P0018531 Atp6v1h protein_coding protein_coding MGP_C3HHeJ_T0018532.1 MGP_C3HHeJ_G0015587.1 mouse_genomes_project 1 2172762 2189424 + Atp6v1h protein_coding retained_intron MGP_C3HHeJ_T0002749.1 MGP_C3HHeJ_G0002611.1 mouse_genomes_project 1 59290846 59306765 - Gm28411 antisense antisense MGP_C3HHeJ_T0002751.1 MGP_C3HHeJ_G0002611.1 mouse_genomes_project 1 59300251 59307498 - Gm28411 antisense antisense MGP_C3HHeJ_T0021735.1 MGP_C3HHeJ_G0016223.1 mouse_genomes_project 1 133925811 133937782 + MGP_C3HHeJ_P0021735 Fam72a protein_coding protein_coding MGP_C3HHeJ_T0018493.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1555312 1560792 - MGP_C3HHeJ_P0018493 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018494.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1555631 1561136 - MGP_C3HHeJ_P0018494 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018495.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1555771 1561733 - MGP_C3HHeJ_P0018495 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018496.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556094 1560742 - MGP_C3HHeJ_P0018496 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018497.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556838 1557986 - Sox17 protein_coding retained_intron MGP_C3HHeJ_T0018498.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556839 1560709 - MGP_C3HHeJ_P0018498 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018499.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556846 1558117 - MGP_C3HHeJ_P0018499 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0018500.1 MGP_C3HHeJ_G0015581.1 mouse_genomes_project 1 1556848 1560775 - MGP_C3HHeJ_P0018500 Sox17 protein_coding protein_coding MGP_C3HHeJ_T0002703.1 MGP_C3HHeJ_G0002574.1 mouse_genomes_project 1 17822302 17857550 + 4930486I03Rik antisense antisense MGP_C3HHeJ_T0000658.1 MGP_C3HHeJ_G0000603.1 mouse_genomes_project 1 159141270 159141505 + TEC TEC MGP_C3HHeJ_T0002933.1 MGP_C3HHeJ_G0002750.1 mouse_genomes_project 1 197409728 197414061 - Gm26670 antisense antisense MGP_C3HHeJ_T0023133.1 MGP_C3HHeJ_G0016508.1 mouse_genomes_project 1 175084973 175107944 - MGP_C3HHeJ_P0023133 Pcp4l1 protein_coding protein_coding MGP_C3HHeJ_T0019336.1 MGP_C3HHeJ_G0015744.1 mouse_genomes_project 1 39291304 39346579 + MGP_C3HHeJ_P0019336 Tmem182 protein_coding protein_coding MGP_C3HHeJ_T0005712.1 MGP_C3HHeJ_G0004784.1 mouse_genomes_project 1 73804632 73808150 - C530043A13Rik lincRNA lincRNA MGP_C3HHeJ_T0005713.1 MGP_C3HHeJ_G0004784.1 mouse_genomes_project 1 73804634 73807983 - C530043A13Rik lincRNA lincRNA MGP_C3HHeJ_T0005714.1 MGP_C3HHeJ_G0004784.1 mouse_genomes_project 1 73805755 73812312 - C530043A13Rik lincRNA lincRNA MGP_C3HHeJ_T0021513.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122225258 122302838 - MGP_C3HHeJ_P0021513 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0021514.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122258617 122308666 - MGP_C3HHeJ_P0021514 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0021515.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122260879 122308005 - MGP_C3HHeJ_P0021515 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0021516.1 MGP_C3HHeJ_G0016174.1 mouse_genomes_project 1 122261898 122307812 - MGP_C3HHeJ_P0021516 Steap3 protein_coding protein_coding MGP_C3HHeJ_T0000562.1 MGP_C3HHeJ_G0000509.1 mouse_genomes_project 1 123349209 123349885 - TEC TEC MGP_C3HHeJ_T0012072.1 MGP_C3HHeJ_G0010176.1 mouse_genomes_project 1 106070928 106071404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000703.1 MGP_C3HHeJ_G0000648.1 mouse_genomes_project 1 169557814 169558376 - TEC TEC MGP_C3HHeJ_T0012218.1 MGP_C3HHeJ_G0010322.1 mouse_genomes_project 1 169442840 169443902 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012102.1 MGP_C3HHeJ_G0010206.1 mouse_genomes_project 1 117141482 117142056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002864.1 MGP_C3HHeJ_G0002698.1 mouse_genomes_project 1 165597761 165609247 + 2810442N19Rik antisense antisense MGP_C3HHeJ_T0002865.1 MGP_C3HHeJ_G0002698.1 mouse_genomes_project 1 165597964 165609256 + 2810442N19Rik antisense antisense MGP_C3HHeJ_T0012160.1 MGP_C3HHeJ_G0010264.1 mouse_genomes_project 1 145378925 145379540 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005577.1 MGP_C3HHeJ_G0004684.1 mouse_genomes_project 1 9868221 9869074 - Gm29663 lincRNA lincRNA MGP_C3HHeJ_T0000634.1 MGP_C3HHeJ_G0000579.1 mouse_genomes_project 1 143141759 143145125 + TEC TEC MGP_C3HHeJ_T0000638.1 MGP_C3HHeJ_G0000583.1 mouse_genomes_project 1 145684679 145684813 + TEC TEC MGP_C3HHeJ_T0012077.1 MGP_C3HHeJ_G0010181.1 mouse_genomes_project 1 107255986 107256603 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005906.1 MGP_C3HHeJ_G0004939.1 mouse_genomes_project 1 169429970 169431192 + Gm37073 lincRNA lincRNA MGP_C3HHeJ_T0000756.1 MGP_C3HHeJ_G0000699.1 mouse_genomes_project 1 192296010 192298962 - TEC TEC MGP_C3HHeJ_T0021417.1 MGP_C3HHeJ_G0016157.1 mouse_genomes_project 1 119985662 120007365 + MGP_C3HHeJ_P0021417 protein_coding protein_coding MGP_C3HHeJ_T0020460.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75532706 75550867 - MGP_C3HHeJ_P0020460 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020461.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75542490 75543630 - Ptprn protein_coding retained_intron MGP_C3HHeJ_T0020462.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544123 75550547 - MGP_C3HHeJ_P0020462 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020463.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544123 75550704 - MGP_C3HHeJ_P0020463 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020464.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544191 75551156 - MGP_C3HHeJ_P0020464 Ptprn protein_coding protein_coding MGP_C3HHeJ_T0020465.1 MGP_C3HHeJ_G0015951.1 mouse_genomes_project 1 75544215 75550862 - Ptprn protein_coding processed_transcript MGP_C3HHeJ_T0023767.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188378878 188399688 - MGP_C3HHeJ_P0023767 Brox protein_coding protein_coding MGP_C3HHeJ_T0023768.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188378880 188399952 - MGP_C3HHeJ_P0023768 Brox protein_coding protein_coding MGP_C3HHeJ_T0023769.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188379590 188399965 - MGP_C3HHeJ_P0023769 Brox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023770.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188386485 188388899 - Brox protein_coding retained_intron MGP_C3HHeJ_T0023771.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188388842 188395422 - Brox protein_coding retained_intron MGP_C3HHeJ_T0023772.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188388897 188399924 - MGP_C3HHeJ_P0023772 Brox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023773.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188390457 188394989 - Brox protein_coding retained_intron MGP_C3HHeJ_T0023774.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188393559 188399952 - Brox protein_coding processed_transcript MGP_C3HHeJ_T0023775.1 MGP_C3HHeJ_G0016662.1 mouse_genomes_project 1 188394653 188398569 - MGP_C3HHeJ_P0023775 Brox protein_coding protein_coding MGP_C3HHeJ_T0000551.1 MGP_C3HHeJ_G0000498.1 mouse_genomes_project 1 107543811 107547160 - TEC TEC MGP_C3HHeJ_T0019033.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33069422 33093528 + MGP_C3HHeJ_P0019033 Plekhb2 protein_coding protein_coding MGP_C3HHeJ_T0019034.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33069438 33099153 + MGP_C3HHeJ_P0019034 Plekhb2 protein_coding protein_coding MGP_C3HHeJ_T0019035.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33071456 33083059 + MGP_C3HHeJ_P0019035 Plekhb2 protein_coding protein_coding MGP_C3HHeJ_T0019036.1 MGP_C3HHeJ_G0015687.1 mouse_genomes_project 1 33097227 33099150 + Plekhb2 protein_coding processed_transcript MGP_C3HHeJ_T0002788.1 MGP_C3HHeJ_G0002640.1 mouse_genomes_project 1 93715638 93716014 - 1700054K02Rik antisense antisense MGP_C3HHeJ_T0005683.1 MGP_C3HHeJ_G0004763.1 mouse_genomes_project 1 62975755 62986078 + Gm20342 lincRNA lincRNA MGP_C3HHeJ_T0019920.1 MGP_C3HHeJ_G0015849.1 mouse_genomes_project 1 60535150 60575364 + Cd28 protein_coding processed_transcript MGP_C3HHeJ_T0019921.1 MGP_C3HHeJ_G0015849.1 mouse_genomes_project 1 60558515 60585552 + MGP_C3HHeJ_P0019921 Cd28 protein_coding protein_coding MGP_C3HHeJ_T0019922.1 MGP_C3HHeJ_G0015849.1 mouse_genomes_project 1 60558559 60576827 + Cd28 protein_coding retained_intron MGP_C3HHeJ_T0018716.1 MGP_C3HHeJ_G0015614.1 mouse_genomes_project 1 10788032 10817253 - MGP_C3HHeJ_P0018716 Tram1 protein_coding protein_coding MGP_C3HHeJ_T0018717.1 MGP_C3HHeJ_G0015614.1 mouse_genomes_project 1 10802495 10806148 - Tram1 protein_coding retained_intron MGP_C3HHeJ_T0018718.1 MGP_C3HHeJ_G0015614.1 mouse_genomes_project 1 10804469 10817218 - MGP_C3HHeJ_P0018718 Tram1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022841.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166849767 166917566 - MGP_C3HHeJ_P0022841 Prrx1 protein_coding protein_coding MGP_C3HHeJ_T0022842.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166849767 166917528 - MGP_C3HHeJ_P0022842 Prrx1 protein_coding protein_coding MGP_C3HHeJ_T0022843.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166852229 166893716 - Prrx1 protein_coding processed_transcript MGP_C3HHeJ_T0022844.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166857500 166917524 - MGP_C3HHeJ_P0022844 Prrx1 protein_coding protein_coding MGP_C3HHeJ_T0022845.1 MGP_C3HHeJ_G0016436.1 mouse_genomes_project 1 166887300 166917527 - Prrx1 protein_coding retained_intron MGP_C3HHeJ_T0005748.1 MGP_C3HHeJ_G0004812.1 mouse_genomes_project 1 89631089 89632883 + Gm29336 lincRNA lincRNA MGP_C3HHeJ_T0022725.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623111 164641218 + MGP_C3HHeJ_P0022725 Cenpl protein_coding protein_coding MGP_C3HHeJ_T0022726.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623165 164640836 + MGP_C3HHeJ_P0022726 Cenpl protein_coding protein_coding MGP_C3HHeJ_T0022727.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623165 164640836 + MGP_C3HHeJ_P0022727 Cenpl protein_coding protein_coding MGP_C3HHeJ_T0022728.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623290 164640822 + MGP_C3HHeJ_P0022728 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022729.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623348 164640822 + MGP_C3HHeJ_P0022729 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022730.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623364 164641222 + MGP_C3HHeJ_P0022730 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022731.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623383 164636711 + MGP_C3HHeJ_P0022731 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022732.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164623414 164640836 + MGP_C3HHeJ_P0022732 Cenpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022733.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164624802 164625402 + Cenpl protein_coding processed_transcript MGP_C3HHeJ_T0022734.1 MGP_C3HHeJ_G0016414.1 mouse_genomes_project 1 164628277 164636622 + Cenpl protein_coding processed_transcript MGP_C3HHeJ_T0000587.1 MGP_C3HHeJ_G0000534.1 mouse_genomes_project 1 131574080 131576567 + TEC TEC MGP_C3HHeJ_T0012013.1 MGP_C3HHeJ_G0010117.1 mouse_genomes_project 1 76424250 76424650 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022391.1 MGP_C3HHeJ_G0016356.1 mouse_genomes_project 1 155955676 155962650 + MGP_C3HHeJ_P0022391 Apobec4 protein_coding protein_coding MGP_C3HHeJ_T0011864.1 MGP_C3HHeJ_G0009968.1 mouse_genomes_project 1 31456472 31457385 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000752.1 MGP_C3HHeJ_G0000695.1 mouse_genomes_project 1 191371701 191372189 + TEC TEC MGP_C3HHeJ_T0098600.1 MGP_C3HHeJ_G0036794.1 mouse_genomes_project 1 10573542 10573654 - Gm23169 snRNA snRNA MGP_C3HHeJ_T0011872.1 MGP_C3HHeJ_G0009976.1 mouse_genomes_project 1 32828062 32828485 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099819.1 MGP_C3HHeJ_G0038013.1 mouse_genomes_project 1 4403534 4403664 + Gm23274 snoRNA snoRNA MGP_C3HHeJ_T0000398.1 MGP_C3HHeJ_G0000346.1 mouse_genomes_project 1 30593469 30595014 + TEC TEC MGP_C3HHeJ_T0021056.1 MGP_C3HHeJ_G0016071.1 mouse_genomes_project 1 92395340 92424001 + MGP_C3HHeJ_P0021056 Espnl protein_coding protein_coding MGP_C3HHeJ_T0021057.1 MGP_C3HHeJ_G0016071.1 mouse_genomes_project 1 92395398 92421579 + MGP_C3HHeJ_P0021057 Espnl protein_coding protein_coding MGP_C3HHeJ_T0020521.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75770225 75778144 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020526.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75776735 75797458 - MGP_C3HHeJ_P0020526 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020527.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75777761 75778713 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020528.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75778133 75778989 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020529.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75781444 75796738 - MGP_C3HHeJ_P0020529 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020530.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75781759 75783978 - MGP_C3HHeJ_P0020530 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020531.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75781879 75782722 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020532.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75782268 75783542 - Obsl1 protein_coding processed_transcript MGP_C3HHeJ_T0020533.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75783305 75783952 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020534.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75787442 75797458 - MGP_C3HHeJ_P0020534 Obsl1 protein_coding protein_coding MGP_C3HHeJ_T0020535.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75787443 75794777 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020536.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75792777 75797549 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0020537.1 MGP_C3HHeJ_G0015959.1 mouse_genomes_project 1 75792777 75797458 - Obsl1 protein_coding retained_intron MGP_C3HHeJ_T0019278.1 MGP_C3HHeJ_G0015731.1 mouse_genomes_project 1 38060882 38094272 - MGP_C3HHeJ_P0019278 Creg2 protein_coding protein_coding MGP_C3HHeJ_T0101609.1 MGP_C3HHeJ_G0039575.1 mouse_genomes_project 1 186486029 186486707 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021656.1 MGP_C3HHeJ_G0016203.1 mouse_genomes_project 1 132804020 132838980 - MGP_C3HHeJ_P0021656 Cd55 protein_coding protein_coding MGP_C3HHeJ_T0021657.1 MGP_C3HHeJ_G0016203.1 mouse_genomes_project 1 132805147 132814007 - Cd55 protein_coding retained_intron MGP_C3HHeJ_T0021658.1 MGP_C3HHeJ_G0016203.1 mouse_genomes_project 1 132811391 132817196 - MGP_C3HHeJ_P0021658 Cd55 protein_coding protein_coding MGP_C3HHeJ_T0020881.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88326048 88418330 + MGP_C3HHeJ_P0020881 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020882.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88395733 88419498 + MGP_C3HHeJ_P0020882 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020883.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88395733 88419481 + MGP_C3HHeJ_P0020883 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020884.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88395752 88418225 + MGP_C3HHeJ_P0020884 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020885.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88405725 88419505 + MGP_C3HHeJ_P0020885 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020886.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88416209 88419481 + MGP_C3HHeJ_P0020886 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0020887.1 MGP_C3HHeJ_G0016033.1 mouse_genomes_project 1 88416209 88419487 + MGP_C3HHeJ_P0020887 Neu2 protein_coding protein_coding MGP_C3HHeJ_T0011983.1 MGP_C3HHeJ_G0010087.1 mouse_genomes_project 1 63763570 63764322 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005686.1 MGP_C3HHeJ_G0004765.1 mouse_genomes_project 1 63876950 63881220 + Gm13749 lincRNA lincRNA MGP_C3HHeJ_T0005867.1 MGP_C3HHeJ_G0004911.1 mouse_genomes_project 1 157234170 157236235 + Gm29290 lincRNA lincRNA MGP_C3HHeJ_T0023433.1 MGP_C3HHeJ_G0016590.1 mouse_genomes_project 1 178835142 178836230 - MGP_C3HHeJ_P0023433 Olfr419 protein_coding protein_coding MGP_C3HHeJ_T0011855.1 MGP_C3HHeJ_G0009959.1 mouse_genomes_project 1 29322924 29323488 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005640.1 MGP_C3HHeJ_G0004729.1 mouse_genomes_project 1 41874100 41929090 - Gm29040 lincRNA lincRNA MGP_C3HHeJ_T0012104.1 MGP_C3HHeJ_G0010208.1 mouse_genomes_project 1 119405893 119407169 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009452.1 MGP_C3HHeJ_G0007585.1 mouse_genomes_project 1 158655905 158656029 + Gm22569 miRNA miRNA MGP_C3HHeJ_T0012068.1 MGP_C3HHeJ_G0010172.1 mouse_genomes_project 1 103249848 103250578 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020059.1 MGP_C3HHeJ_G0015880.1 mouse_genomes_project 1 65916488 65918303 + MGP_C3HHeJ_P0020059 protein_coding protein_coding MGP_C3HHeJ_T0020060.1 MGP_C3HHeJ_G0015880.1 mouse_genomes_project 1 65916506 65918302 + MGP_C3HHeJ_P0020060 protein_coding protein_coding MGP_C3HHeJ_T0022350.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604192 154619979 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022351.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604192 154635115 + MGP_C3HHeJ_P0022351 Trmt1l protein_coding protein_coding MGP_C3HHeJ_T0022352.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604287 154612338 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022353.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604292 154627067 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022354.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604298 154606286 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022355.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604317 154612338 + Trmt1l protein_coding retained_intron MGP_C3HHeJ_T0022356.1 MGP_C3HHeJ_G0016348.1 mouse_genomes_project 1 154604356 154635115 + MGP_C3HHeJ_P0022356 Trmt1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000413.1 MGP_C3HHeJ_G0000360.1 mouse_genomes_project 1 34281172 34282545 - TEC TEC MGP_C3HHeJ_T0002855.1 MGP_C3HHeJ_G0002690.1 mouse_genomes_project 1 160887581 160906058 - Gm15486 antisense antisense MGP_C3HHeJ_T0011800.1 MGP_C3HHeJ_G0009904.1 mouse_genomes_project 1 10285525 10285846 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009418.1 MGP_C3HHeJ_G0007551.1 mouse_genomes_project 1 76826747 76826831 + Mir6343 miRNA miRNA MGP_C3HHeJ_T0022651.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162696974 162719331 + MGP_C3HHeJ_P0022651 Rfwd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022652.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162696974 162819980 + MGP_C3HHeJ_P0022652 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022653.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162697264 162758747 + MGP_C3HHeJ_P0022653 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022654.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162697306 162719354 + MGP_C3HHeJ_P0022654 Rfwd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022655.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162708039 162736246 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022656.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162718459 162777145 + MGP_C3HHeJ_P0022656 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022657.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162727903 162779036 + MGP_C3HHeJ_P0022657 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022658.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162735993 162743806 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022659.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162777183 162779657 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022660.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162777194 162796068 + MGP_C3HHeJ_P0022660 Rfwd2 protein_coding protein_coding MGP_C3HHeJ_T0022661.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162778981 162796149 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022662.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162792027 162796997 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0022663.1 MGP_C3HHeJ_G0016403.1 mouse_genomes_project 1 162814715 162817407 + Rfwd2 protein_coding retained_intron MGP_C3HHeJ_T0005702.1 MGP_C3HHeJ_G0004777.1 mouse_genomes_project 1 72187106 72234042 - 4933417E11Rik lincRNA lincRNA MGP_C3HHeJ_T0000693.1 MGP_C3HHeJ_G0000638.1 mouse_genomes_project 1 165390354 165395028 - TEC TEC MGP_C3HHeJ_T0022000.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137299732 137511649 - MGP_C3HHeJ_P0022000 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0022001.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137300637 137305456 - Ppp1r12b protein_coding processed_transcript MGP_C3HHeJ_T0022002.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137304167 137394684 - Ppp1r12b protein_coding processed_transcript MGP_C3HHeJ_T0022003.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137305071 137511560 - MGP_C3HHeJ_P0022003 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0022004.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137305511 137511491 - MGP_C3HHeJ_P0022004 Ppp1r12b protein_coding unknown_likely_coding MGP_C3HHeJ_T0022005.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137311011 137511649 - MGP_C3HHeJ_P0022005 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0022006.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137324983 137351908 - Ppp1r12b protein_coding retained_intron MGP_C3HHeJ_T0022007.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137327503 137329884 - Ppp1r12b protein_coding retained_intron MGP_C3HHeJ_T0022008.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137382309 137384068 - Ppp1r12b protein_coding processed_transcript MGP_C3HHeJ_T0022009.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137382312 137511637 - Ppp1r12b protein_coding retained_intron MGP_C3HHeJ_T0022010.1 MGP_C3HHeJ_G0016282.1 mouse_genomes_project 1 137502525 137511651 - MGP_C3HHeJ_P0022010 Ppp1r12b protein_coding protein_coding MGP_C3HHeJ_T0018916.1 MGP_C3HHeJ_G0015665.1 mouse_genomes_project 1 26644972 26649131 - MGP_C3HHeJ_P0018916 Gm597 protein_coding protein_coding MGP_C3HHeJ_T0024011.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421131 197422545 - Traf5 protein_coding retained_intron MGP_C3HHeJ_T0024012.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421131 197423899 - MGP_C3HHeJ_P0024012 Traf5 protein_coding protein_coding MGP_C3HHeJ_T0024013.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421356 197451176 - MGP_C3HHeJ_P0024013 Traf5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024014.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197421356 197474484 - MGP_C3HHeJ_P0024014 Traf5 protein_coding protein_coding MGP_C3HHeJ_T0024015.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197430729 197435307 - MGP_C3HHeJ_P0024015 Traf5 protein_coding protein_coding MGP_C3HHeJ_T0024016.1 MGP_C3HHeJ_G0016712.1 mouse_genomes_project 1 197431756 197435307 - Traf5 protein_coding retained_intron MGP_C3HHeJ_T0000665.1 MGP_C3HHeJ_G0000610.1 mouse_genomes_project 1 160015199 160015600 + TEC TEC MGP_C3HHeJ_T0022220.1 MGP_C3HHeJ_G0016326.1 mouse_genomes_project 1 142939746 142994751 - MGP_C3HHeJ_P0022220 protein_coding protein_coding MGP_C3HHeJ_T0022221.1 MGP_C3HHeJ_G0016326.1 mouse_genomes_project 1 142939746 142994751 - MGP_C3HHeJ_P0022221 protein_coding protein_coding MGP_C3HHeJ_T0022226.1 MGP_C3HHeJ_G0016326.1 mouse_genomes_project 1 142939755 142995340 - MGP_C3HHeJ_P0022226 protein_coding protein_coding MGP_C3HHeJ_T0098622.1 MGP_C3HHeJ_G0036816.1 mouse_genomes_project 1 66416355 66416506 + Gm25411 snRNA snRNA MGP_C3HHeJ_T0022086.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435567 138452370 + MGP_C3HHeJ_P0022086 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022087.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435599 138452370 + MGP_C3HHeJ_P0022087 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022088.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435603 138438926 + Tnnt2 protein_coding retained_intron MGP_C3HHeJ_T0022089.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435603 138443929 + Tnnt2 protein_coding retained_intron MGP_C3HHeJ_T0022090.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435615 138447226 + MGP_C3HHeJ_P0022090 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022091.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435623 138452370 + MGP_C3HHeJ_P0022091 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022092.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138435626 138452370 + MGP_C3HHeJ_P0022092 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022093.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138439905 138448636 + MGP_C3HHeJ_P0022093 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022094.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440063 138452370 + MGP_C3HHeJ_P0022094 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022095.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022095 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022096.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022096 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022097.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022097 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022098.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022098 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022099.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138440081 138452370 + MGP_C3HHeJ_P0022099 Tnnt2 protein_coding protein_coding MGP_C3HHeJ_T0022100.1 MGP_C3HHeJ_G0016299.1 mouse_genomes_project 1 138448626 138448918 + Tnnt2 protein_coding retained_intron MGP_C3HHeJ_T0022846.1 MGP_C3HHeJ_G0016437.1 mouse_genomes_project 1 166993158 167011920 - MGP_C3HHeJ_P0022846 Gorab protein_coding protein_coding MGP_C3HHeJ_T0022847.1 MGP_C3HHeJ_G0016437.1 mouse_genomes_project 1 166993162 167011907 - MGP_C3HHeJ_P0022847 Gorab protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022848.1 MGP_C3HHeJ_G0016437.1 mouse_genomes_project 1 167002666 167011862 - Gorab protein_coding retained_intron MGP_C3HHeJ_T0012114.1 MGP_C3HHeJ_G0010218.1 mouse_genomes_project 1 121837270 121837633 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021901.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136105060 136151026 - MGP_C3HHeJ_P0021901 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021902.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136105069 136151088 - MGP_C3HHeJ_P0021902 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021904.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136110653 136113334 - Zc3h11a protein_coding processed_transcript MGP_C3HHeJ_T0021905.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136113231 136126227 - MGP_C3HHeJ_P0021905 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021906.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136125940 136151086 - MGP_C3HHeJ_P0021906 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021907.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136126198 136151066 - MGP_C3HHeJ_P0021907 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021908.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136127326 136151068 - Zc3h11a protein_coding retained_intron MGP_C3HHeJ_T0021909.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136127617 136150990 - MGP_C3HHeJ_P0021909 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021910.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136132740 136151004 - MGP_C3HHeJ_P0021910 Zc3h11a protein_coding protein_coding MGP_C3HHeJ_T0021911.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136134176 136150989 - Zc3h11a protein_coding retained_intron MGP_C3HHeJ_T0021912.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136134429 136151076 - Zc3h11a protein_coding processed_transcript MGP_C3HHeJ_T0021913.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136144027 136151067 - Zc3h11a protein_coding processed_transcript MGP_C3HHeJ_T0021914.1 MGP_C3HHeJ_G0016258.1 mouse_genomes_project 1 136144371 136151088 - Zc3h11a protein_coding retained_intron MGP_C3HHeJ_T0005795.1 MGP_C3HHeJ_G0004852.1 mouse_genomes_project 1 115183260 115184795 + Gm28189 lincRNA lincRNA MGP_C3HHeJ_T0000753.1 MGP_C3HHeJ_G0000696.1 mouse_genomes_project 1 191546671 191547783 + TEC TEC MGP_C3HHeJ_T0020764.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756278 86762704 + protein_coding retained_intron MGP_C3HHeJ_T0020765.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756278 86763588 + protein_coding processed_transcript MGP_C3HHeJ_T0020766.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756511 86827083 + MGP_C3HHeJ_P0020766 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020767.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756511 86833455 + MGP_C3HHeJ_P0020767 protein_coding protein_coding MGP_C3HHeJ_T0020768.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756533 86759555 + protein_coding retained_intron MGP_C3HHeJ_T0020769.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756584 86764212 + protein_coding retained_intron MGP_C3HHeJ_T0020770.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86756763 86769313 + protein_coding processed_transcript MGP_C3HHeJ_T0020773.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86805084 86827134 + protein_coding processed_transcript MGP_C3HHeJ_T0020774.1 MGP_C3HHeJ_G0016007.1 mouse_genomes_project 1 86822404 86827101 + protein_coding retained_intron MGP_C3HHeJ_T0018915.1 MGP_C3HHeJ_G0015664.1 mouse_genomes_project 1 24397678 24405163 - MGP_C3HHeJ_P0018915 4931408C20Rik protein_coding protein_coding MGP_C3HHeJ_T0020949.1 MGP_C3HHeJ_G0016045.1 mouse_genomes_project 1 89061838 89122337 + MGP_C3HHeJ_P0020949 Ugt1a5 protein_coding protein_coding MGP_C3HHeJ_T0021418.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120275022 120291625 - MGP_C3HHeJ_P0021418 Tsn protein_coding protein_coding MGP_C3HHeJ_T0021419.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120279883 120290447 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0021420.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120281123 120290196 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0021421.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120284924 120291671 - Tsn protein_coding processed_transcript MGP_C3HHeJ_T0021422.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120288916 120291445 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0021423.1 MGP_C3HHeJ_G0016158.1 mouse_genomes_project 1 120290889 120291986 - Tsn protein_coding retained_intron MGP_C3HHeJ_T0000391.1 MGP_C3HHeJ_G0000339.1 mouse_genomes_project 1 23491406 23492422 - TEC TEC MGP_C3HHeJ_T0021518.1 MGP_C3HHeJ_G0016176.1 mouse_genomes_project 1 122528236 122560753 - MGP_C3HHeJ_P0021518 Marco protein_coding protein_coding MGP_C3HHeJ_T0021519.1 MGP_C3HHeJ_G0016176.1 mouse_genomes_project 1 122545556 122560485 - MGP_C3HHeJ_P0021519 Marco protein_coding protein_coding MGP_C3HHeJ_T0021495.1 MGP_C3HHeJ_G0016169.1 mouse_genomes_project 1 121952371 122022824 - MGP_C3HHeJ_P0021495 Cfap221 protein_coding protein_coding MGP_C3HHeJ_T0021496.1 MGP_C3HHeJ_G0016169.1 mouse_genomes_project 1 121952549 122020850 - MGP_C3HHeJ_P0021496 Cfap221 protein_coding protein_coding MGP_C3HHeJ_T0021497.1 MGP_C3HHeJ_G0016169.1 mouse_genomes_project 1 121986920 122022868 - MGP_C3HHeJ_P0021497 Cfap221 protein_coding protein_coding MGP_C3HHeJ_T0098337.1 MGP_C3HHeJ_G0036548.1 mouse_genomes_project 1 192328408 192331900 - Gm15509 sense_intronic sense_intronic MGP_C3HHeJ_T0000347.1 MGP_C3HHeJ_G0000297.1 mouse_genomes_project 1 10282907 10283458 - TEC TEC MGP_C3HHeJ_T0098623.1 MGP_C3HHeJ_G0036817.1 mouse_genomes_project 1 66842188 66842248 + Gm27934 snRNA snRNA MGP_C3HHeJ_T0002814.1 MGP_C3HHeJ_G0002659.1 mouse_genomes_project 1 133191022 133205131 - Gm15848 antisense antisense MGP_C3HHeJ_T0002815.1 MGP_C3HHeJ_G0002659.1 mouse_genomes_project 1 133191248 133201721 - Gm15848 antisense antisense MGP_C3HHeJ_T0002816.1 MGP_C3HHeJ_G0002659.1 mouse_genomes_project 1 133198448 133201751 - Gm15848 antisense antisense MGP_C3HHeJ_T0005625.1 MGP_C3HHeJ_G0004725.1 mouse_genomes_project 1 40850894 40851293 + lincRNA lincRNA MGP_C3HHeJ_T0021394.1 MGP_C3HHeJ_G0016150.1 mouse_genomes_project 1 109295843 109309605 + MGP_C3HHeJ_P0021394 protein_coding protein_coding MGP_C3HHeJ_T0021986.1 MGP_C3HHeJ_G0016278.1 mouse_genomes_project 1 137019793 137035936 + MGP_C3HHeJ_P0021986 Rabif protein_coding protein_coding MGP_C3HHeJ_T0022256.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708659 146739319 + MGP_C3HHeJ_P0022256 Uchl5 protein_coding protein_coding MGP_C3HHeJ_T0022257.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708663 146715623 + Uchl5 protein_coding retained_intron MGP_C3HHeJ_T0022258.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708668 146739480 + MGP_C3HHeJ_P0022258 Uchl5 protein_coding protein_coding MGP_C3HHeJ_T0022259.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708692 146717706 + Uchl5 protein_coding retained_intron MGP_C3HHeJ_T0022260.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146708708 146731853 + MGP_C3HHeJ_P0022260 Uchl5 protein_coding protein_coding MGP_C3HHeJ_T0022261.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146715003 146726105 + Uchl5 protein_coding retained_intron MGP_C3HHeJ_T0022262.1 MGP_C3HHeJ_G0016332.1 mouse_genomes_project 1 146726043 146738881 + MGP_C3HHeJ_P0022262 Uchl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005831.1 MGP_C3HHeJ_G0004881.1 mouse_genomes_project 1 136095609 136099621 + Gm26706 lincRNA lincRNA MGP_C3HHeJ_T0009457.1 MGP_C3HHeJ_G0007590.1 mouse_genomes_project 1 165820581 165820691 + Mir214 miRNA miRNA MGP_C3HHeJ_T0000378.1 MGP_C3HHeJ_G0000326.1 mouse_genomes_project 1 23006313 23008846 - TEC TEC MGP_C3HHeJ_T0023466.1 MGP_C3HHeJ_G0016600.1 mouse_genomes_project 1 180261661 180292031 - MGP_C3HHeJ_P0023466 Opn3 protein_coding protein_coding MGP_C3HHeJ_T0023650.1 MGP_C3HHeJ_G0016635.1 mouse_genomes_project 1 185716098 185745771 + MGP_C3HHeJ_P0023650 Acbd3 protein_coding protein_coding MGP_C3HHeJ_T0023651.1 MGP_C3HHeJ_G0016635.1 mouse_genomes_project 1 185719912 185724550 + Acbd3 protein_coding retained_intron MGP_C3HHeJ_T0021468.1 MGP_C3HHeJ_G0016163.1 mouse_genomes_project 1 121431057 121439122 - MGP_C3HHeJ_P0021468 Inhbb protein_coding protein_coding MGP_C3HHeJ_T0009459.1 MGP_C3HHeJ_G0007592.1 mouse_genomes_project 1 169402397 169402540 + Gm44458 miRNA miRNA MGP_C3HHeJ_T0019097.1 MGP_C3HHeJ_G0015698.1 mouse_genomes_project 1 34811976 34823320 - MGP_C3HHeJ_P0019097 Ankrd39 protein_coding protein_coding MGP_C3HHeJ_T0009426.1 MGP_C3HHeJ_G0007559.1 mouse_genomes_project 1 87060208 87060355 - Mir3535 miRNA miRNA MGP_C3HHeJ_T0000632.1 MGP_C3HHeJ_G0000577.1 mouse_genomes_project 1 141815874 141820008 - TEC TEC MGP_C3HHeJ_T0005840.1 MGP_C3HHeJ_G0004890.1 mouse_genomes_project 1 139209666 139212206 - Gm33994 lincRNA lincRNA MGP_C3HHeJ_T0021939.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701220 136710312 + MGP_C3HHeJ_P0021939 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021940.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701448 136710305 + MGP_C3HHeJ_P0021940 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021941.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701448 136710457 + MGP_C3HHeJ_P0021941 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021942.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701518 136706827 + MGP_C3HHeJ_P0021942 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021943.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701525 136706837 + MGP_C3HHeJ_P0021943 Chil1 protein_coding protein_coding MGP_C3HHeJ_T0021944.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136701526 136707114 + Chil1 protein_coding retained_intron MGP_C3HHeJ_T0021945.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136702845 136706896 + Chil1 protein_coding retained_intron MGP_C3HHeJ_T0021946.1 MGP_C3HHeJ_G0016268.1 mouse_genomes_project 1 136709401 136710303 + Chil1 protein_coding retained_intron MGP_C3HHeJ_T0005675.1 MGP_C3HHeJ_G0004757.1 mouse_genomes_project 1 61211738 61231018 + 9530026F06Rik lincRNA lincRNA MGP_C3HHeJ_T0099848.1 MGP_C3HHeJ_G0038042.1 mouse_genomes_project 1 58807680 58807811 + Gm25502 snoRNA snoRNA MGP_C3HHeJ_T0021662.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133008130 133034915 - MGP_C3HHeJ_P0021662 C4bp protein_coding protein_coding MGP_C3HHeJ_T0021663.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133010171 133021714 - MGP_C3HHeJ_P0021663 C4bp protein_coding protein_coding MGP_C3HHeJ_T0021664.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133016367 133034893 - MGP_C3HHeJ_P0021664 C4bp protein_coding protein_coding MGP_C3HHeJ_T0021665.1 MGP_C3HHeJ_G0016205.1 mouse_genomes_project 1 133031062 133034907 - C4bp protein_coding retained_intron MGP_C3HHeJ_T0005776.1 MGP_C3HHeJ_G0004838.1 mouse_genomes_project 1 97917799 97970532 - 4930533P14Rik lincRNA lincRNA MGP_C3HHeJ_T0012193.1 MGP_C3HHeJ_G0010297.1 mouse_genomes_project 1 158512460 158513041 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022239.1 MGP_C3HHeJ_G0016329.1 mouse_genomes_project 1 146559163 146573105 + MGP_C3HHeJ_P0022239 B3galt2 protein_coding protein_coding MGP_C3HHeJ_T0020939.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88975080 89123352 + MGP_C3HHeJ_P0020939 protein_coding protein_coding MGP_C3HHeJ_T0020941.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88986915 89117572 + MGP_C3HHeJ_P0020941 protein_coding protein_coding MGP_C3HHeJ_T0020942.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88986917 89123352 + MGP_C3HHeJ_P0020942 protein_coding protein_coding MGP_C3HHeJ_T0020943.1 MGP_C3HHeJ_G0016042.1 mouse_genomes_project 1 88986967 89121766 + MGP_C3HHeJ_P0020943 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099824.1 MGP_C3HHeJ_G0038018.1 mouse_genomes_project 1 12331035 12331155 - Gm26345 snoRNA snoRNA MGP_C3HHeJ_T0021414.1 MGP_C3HHeJ_G0016155.1 mouse_genomes_project 1 117629336 118583145 + MGP_C3HHeJ_P0021414 Cntnap5a protein_coding protein_coding MGP_C3HHeJ_T0021415.1 MGP_C3HHeJ_G0016155.1 mouse_genomes_project 1 117629717 118575825 + MGP_C3HHeJ_P0021415 Cntnap5a protein_coding unknown_likely_coding MGP_C3HHeJ_T0021646.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564317 131720392 + Thsd7b protein_coding retained_intron MGP_C3HHeJ_T0021647.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564359 132525317 + MGP_C3HHeJ_P0021647 Thsd7b protein_coding protein_coding MGP_C3HHeJ_T0021648.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564478 132356239 + MGP_C3HHeJ_P0021648 Thsd7b protein_coding protein_coding MGP_C3HHeJ_T0021649.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131564500 131921022 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0021650.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131821747 131921145 + MGP_C3HHeJ_P0021650 Thsd7b protein_coding protein_coding MGP_C3HHeJ_T0021651.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 131905763 131908532 + Thsd7b protein_coding retained_intron MGP_C3HHeJ_T0021652.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 132214960 132491210 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0021653.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 132471859 132525315 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0021654.1 MGP_C3HHeJ_G0016201.1 mouse_genomes_project 1 132471874 132473427 + Thsd7b protein_coding processed_transcript MGP_C3HHeJ_T0011956.1 MGP_C3HHeJ_G0010060.1 mouse_genomes_project 1 58474208 58474659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098668.1 MGP_C3HHeJ_G0036862.1 mouse_genomes_project 1 174705107 174705214 - Gm25235 snRNA snRNA MGP_C3HHeJ_T0097968.1 MGP_C3HHeJ_G0036180.1 mouse_genomes_project 1 152833335 152833444 - n-R5s218 rRNA rRNA MGP_C3HHeJ_T0020577.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78909490 78928694 + MGP_C3HHeJ_P0020577 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020578.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78909659 78930234 + MGP_C3HHeJ_P0020578 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020579.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78909668 78939306 + MGP_C3HHeJ_P0020579 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020580.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78910314 78923856 + MGP_C3HHeJ_P0020580 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020581.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78910369 78939308 + MGP_C3HHeJ_P0020581 Mogat1 protein_coding protein_coding MGP_C3HHeJ_T0020582.1 MGP_C3HHeJ_G0015968.1 mouse_genomes_project 1 78938762 78939308 + Mogat1 protein_coding processed_transcript MGP_C3HHeJ_T0101583.1 MGP_C3HHeJ_G0039549.1 mouse_genomes_project 1 134320619 134321410 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011754.1 MGP_C3HHeJ_G0009858.1 mouse_genomes_project 1 1748835 1750283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005808.1 MGP_C3HHeJ_G0004862.1 mouse_genomes_project 1 122821709 122826832 + Gm29346 lincRNA lincRNA MGP_C3HHeJ_T0000570.1 MGP_C3HHeJ_G0000517.1 mouse_genomes_project 1 125610077 125613297 - TEC TEC MGP_C3HHeJ_T0023434.1 MGP_C3HHeJ_G0016591.1 mouse_genomes_project 1 178961016 178961946 + MGP_C3HHeJ_P0023434 Olfr417 protein_coding protein_coding MGP_C3HHeJ_T0002711.1 MGP_C3HHeJ_G0002581.1 mouse_genomes_project 1 34356671 34357738 - Gm37335 antisense antisense MGP_C3HHeJ_T0023920.1 MGP_C3HHeJ_G0016692.1 mouse_genomes_project 1 195452904 195506049 - MGP_C3HHeJ_P0023920 Prox1 protein_coding protein_coding MGP_C3HHeJ_T0023921.1 MGP_C3HHeJ_G0016692.1 mouse_genomes_project 1 195457322 195504728 - MGP_C3HHeJ_P0023921 Prox1 protein_coding protein_coding MGP_C3HHeJ_T0023922.1 MGP_C3HHeJ_G0016692.1 mouse_genomes_project 1 195457879 195506015 - MGP_C3HHeJ_P0023922 Prox1 protein_coding protein_coding MGP_C3HHeJ_T0023316.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176499818 176509844 - MGP_C3HHeJ_P0023316 Pea15a protein_coding protein_coding MGP_C3HHeJ_T0023317.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176499818 176509844 - MGP_C3HHeJ_P0023317 Pea15a protein_coding protein_coding MGP_C3HHeJ_T0023318.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176501503 176502903 - Pea15a protein_coding processed_transcript MGP_C3HHeJ_T0023319.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176502248 176509737 - MGP_C3HHeJ_P0023319 Pea15a protein_coding protein_coding MGP_C3HHeJ_T0023320.1 MGP_C3HHeJ_G0016544.1 mouse_genomes_project 1 176502862 176509844 - Pea15a protein_coding retained_intron MGP_C3HHeJ_T0005777.1 MGP_C3HHeJ_G0004839.1 mouse_genomes_project 1 99479842 99486560 + 1810006J02Rik lincRNA lincRNA MGP_C3HHeJ_T0005778.1 MGP_C3HHeJ_G0004839.1 mouse_genomes_project 1 99479853 99493015 + 1810006J02Rik lincRNA lincRNA MGP_C3HHeJ_T0022664.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 162998505 163416237 + MGP_C3HHeJ_P0022664 Tnr protein_coding protein_coding MGP_C3HHeJ_T0022665.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 162998577 163211404 + Tnr protein_coding retained_intron MGP_C3HHeJ_T0022666.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 163211118 163407843 + MGP_C3HHeJ_P0022666 Tnr protein_coding protein_coding MGP_C3HHeJ_T0022667.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 163248547 163331141 + MGP_C3HHeJ_P0022667 Tnr protein_coding protein_coding MGP_C3HHeJ_T0022668.1 MGP_C3HHeJ_G0016404.1 mouse_genomes_project 1 163331195 163344418 + MGP_C3HHeJ_P0022668 Tnr protein_coding protein_coding MGP_C3HHeJ_T0011904.1 MGP_C3HHeJ_G0010008.1 mouse_genomes_project 1 43865703 43866641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005853.1 MGP_C3HHeJ_G0004899.1 mouse_genomes_project 1 141370035 141408887 - Gm5833 lincRNA lincRNA MGP_C3HHeJ_T0005854.1 MGP_C3HHeJ_G0004899.1 mouse_genomes_project 1 141398221 141408875 - Gm5833 lincRNA lincRNA MGP_C3HHeJ_T0099865.1 MGP_C3HHeJ_G0038059.1 mouse_genomes_project 1 87064487 87064557 - Snord82 snoRNA snoRNA MGP_C3HHeJ_T0002756.1 MGP_C3HHeJ_G0002616.1 mouse_genomes_project 1 62552274 62555613 - Gm29083 antisense antisense MGP_C3HHeJ_T0012271.1 MGP_C3HHeJ_G0010375.1 mouse_genomes_project 1 198228767 198229221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000483.1 MGP_C3HHeJ_G0000430.1 mouse_genomes_project 1 70477851 70480251 - TEC TEC MGP_C3HHeJ_T0098638.1 MGP_C3HHeJ_G0036832.1 mouse_genomes_project 1 100400408 100400508 + Gm23434 snRNA snRNA MGP_C3HHeJ_T0011822.1 MGP_C3HHeJ_G0009926.1 mouse_genomes_project 1 18417211 18418412 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024082.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626338 198627576 + Lamb3 protein_coding retained_intron MGP_C3HHeJ_T0024083.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626364 198774690 + MGP_C3HHeJ_P0024083 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024084.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626371 198755506 + MGP_C3HHeJ_P0024084 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024085.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198626389 198677338 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0024094.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198697944 198706246 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0024095.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198730839 198774690 + MGP_C3HHeJ_P0024095 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024096.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198731067 198732224 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0024097.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198731089 198774687 + MGP_C3HHeJ_P0024097 Lamb3 protein_coding protein_coding MGP_C3HHeJ_T0024098.1 MGP_C3HHeJ_G0016722.1 mouse_genomes_project 1 198750215 198755505 + Lamb3 protein_coding processed_transcript MGP_C3HHeJ_T0018743.1 MGP_C3HHeJ_G0015623.1 mouse_genomes_project 1 13411672 13423089 - MGP_C3HHeJ_P0018743 4930444P10Rik protein_coding protein_coding MGP_C3HHeJ_T0018744.1 MGP_C3HHeJ_G0015623.1 mouse_genomes_project 1 13411672 13441595 - MGP_C3HHeJ_P0018744 4930444P10Rik protein_coding protein_coding MGP_C3HHeJ_T0018745.1 MGP_C3HHeJ_G0015623.1 mouse_genomes_project 1 13411672 13441595 - MGP_C3HHeJ_P0018745 4930444P10Rik protein_coding protein_coding MGP_C3HHeJ_T0021399.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111757676 111771191 + MGP_C3HHeJ_P0021399 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021400.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111757955 111922517 + MGP_C3HHeJ_P0021400 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021401.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758226 111770562 + MGP_C3HHeJ_P0021401 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021402.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758251 111769621 + MGP_C3HHeJ_P0021402 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021403.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758474 111921569 + MGP_C3HHeJ_P0021403 Cdh7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021404.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758526 111774130 + MGP_C3HHeJ_P0021404 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021405.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111758982 111921375 + MGP_C3HHeJ_P0021405 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021406.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111769220 111921563 + MGP_C3HHeJ_P0021406 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0021407.1 MGP_C3HHeJ_G0016152.1 mouse_genomes_project 1 111880611 111920432 + MGP_C3HHeJ_P0021407 Cdh7 protein_coding protein_coding MGP_C3HHeJ_T0002759.1 MGP_C3HHeJ_G0002619.1 mouse_genomes_project 1 69666034 69702955 + Gm29114 antisense antisense MGP_C3HHeJ_T0005866.1 MGP_C3HHeJ_G0004910.1 mouse_genomes_project 1 156983350 157000645 - C230024C17Rik lincRNA lincRNA MGP_C3HHeJ_T0005979.1 MGP_C3HHeJ_G0004997.1 mouse_genomes_project 1 196511912 196513270 + Gm38161 lincRNA lincRNA MGP_C3HHeJ_T0022878.1 MGP_C3HHeJ_G0016446.1 mouse_genomes_project 1 167789989 167861045 + MGP_C3HHeJ_P0022878 F5 protein_coding protein_coding MGP_C3HHeJ_T0019985.1 MGP_C3HHeJ_G0015860.1 mouse_genomes_project 1 63533902 63610107 - MGP_C3HHeJ_P0019985 Dytn protein_coding protein_coding MGP_C3HHeJ_T0019986.1 MGP_C3HHeJ_G0015860.1 mouse_genomes_project 1 63585860 63610090 - Dytn protein_coding retained_intron MGP_C3HHeJ_T0012184.1 MGP_C3HHeJ_G0010288.1 mouse_genomes_project 1 154689005 154689874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022044.1 MGP_C3HHeJ_G0016291.1 mouse_genomes_project 1 137902089 137947411 + MGP_C3HHeJ_P0022044 Lmod1 protein_coding protein_coding MGP_C3HHeJ_T0005883.1 MGP_C3HHeJ_G0004922.1 mouse_genomes_project 1 162573468 162605107 + 4930562F17Rik lincRNA lincRNA MGP_C3HHeJ_T0009454.1 MGP_C3HHeJ_G0007587.1 mouse_genomes_project 1 162811381 162811447 + Mir1843b miRNA miRNA MGP_C3HHeJ_T0018742.1 MGP_C3HHeJ_G0015622.1 mouse_genomes_project 1 13204336 13239644 - MGP_C3HHeJ_P0018742 Sbspon protein_coding protein_coding MGP_C3HHeJ_T0012016.1 MGP_C3HHeJ_G0010120.1 mouse_genomes_project 1 80392830 80393308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005677.1 MGP_C3HHeJ_G0004759.1 mouse_genomes_project 1 61317127 61318205 + Gm28449 lincRNA lincRNA MGP_C3HHeJ_T0018705.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10376371 10613348 - MGP_C3HHeJ_P0018705 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0018706.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10376425 10614992 - MGP_C3HHeJ_P0018706 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0018707.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10379744 10614992 - MGP_C3HHeJ_P0018707 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0018708.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10382571 10383886 - Ncoa2 protein_coding processed_transcript MGP_C3HHeJ_T0018709.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10383855 10385765 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018710.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10385686 10388263 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018711.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10403353 10614992 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018712.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10404780 10614938 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018713.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10422294 10613338 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018714.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10424627 10614938 - Ncoa2 protein_coding retained_intron MGP_C3HHeJ_T0018715.1 MGP_C3HHeJ_G0015613.1 mouse_genomes_project 1 10430126 10537300 - MGP_C3HHeJ_P0018715 Ncoa2 protein_coding protein_coding MGP_C3HHeJ_T0019316.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38936579 38962839 + MGP_C3HHeJ_P0019316 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019317.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38936703 38962841 + MGP_C3HHeJ_P0019317 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019318.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38936997 38962839 + MGP_C3HHeJ_P0019318 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019319.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38937033 38972102 + MGP_C3HHeJ_P0019319 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019320.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38937033 38972103 + MGP_C3HHeJ_P0019320 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0019321.1 MGP_C3HHeJ_G0015739.1 mouse_genomes_project 1 38937033 38972082 + MGP_C3HHeJ_P0019321 Il18r1 protein_coding protein_coding MGP_C3HHeJ_T0020143.1 MGP_C3HHeJ_G0015893.1 mouse_genomes_project 1 71226521 71296848 - MGP_C3HHeJ_P0020143 Bard1 protein_coding protein_coding MGP_C3HHeJ_T0023447.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179641687 180085175 - MGP_C3HHeJ_P0023447 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023448.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179641688 180084951 - MGP_C3HHeJ_P0023448 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023449.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179641817 180085065 - MGP_C3HHeJ_P0023449 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023450.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642334 180083801 - MGP_C3HHeJ_P0023450 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023451.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642334 179668659 - MGP_C3HHeJ_P0023451 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023452.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642334 179668719 - MGP_C3HHeJ_P0023452 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023453.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179642335 179661981 - MGP_C3HHeJ_P0023453 Rgs7 protein_coding protein_coding MGP_C3HHeJ_T0023454.1 MGP_C3HHeJ_G0016597.1 mouse_genomes_project 1 179657869 179661501 - Rgs7 protein_coding retained_intron MGP_C3HHeJ_T0012165.1 MGP_C3HHeJ_G0010269.1 mouse_genomes_project 1 147239848 147240253 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021074.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92487775 92489515 - Hes6 protein_coding retained_intron MGP_C3HHeJ_T0021075.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92487775 92489501 - Hes6 protein_coding retained_intron MGP_C3HHeJ_T0021076.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92487775 92489515 - MGP_C3HHeJ_P0021076 Hes6 protein_coding protein_coding MGP_C3HHeJ_T0021077.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92488579 92489501 - Hes6 protein_coding retained_intron MGP_C3HHeJ_T0021078.1 MGP_C3HHeJ_G0016075.1 mouse_genomes_project 1 92488640 92490331 - Hes6 protein_coding processed_transcript MGP_C3HHeJ_T0098652.1 MGP_C3HHeJ_G0036846.1 mouse_genomes_project 1 136802050 136802157 - Gm24517 snRNA snRNA MGP_C3HHeJ_T0021738.1 MGP_C3HHeJ_G0016225.1 mouse_genomes_project 1 134050586 134085433 + MGP_C3HHeJ_P0021738 Ctse protein_coding protein_coding MGP_C3HHeJ_T0021739.1 MGP_C3HHeJ_G0016225.1 mouse_genomes_project 1 134050774 134085431 + MGP_C3HHeJ_P0021739 Ctse protein_coding protein_coding MGP_C3HHeJ_T0021740.1 MGP_C3HHeJ_G0016225.1 mouse_genomes_project 1 134071861 134075397 + Ctse protein_coding retained_intron MGP_C3HHeJ_T0098311.1 MGP_C3HHeJ_G0036523.1 mouse_genomes_project 1 50368440 50370722 + Gm28320 sense_intronic sense_intronic MGP_C3HHeJ_T0020265.1 MGP_C3HHeJ_G0015919.1 mouse_genomes_project 1 74708940 74712651 + MGP_C3HHeJ_P0020265 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020266.1 MGP_C3HHeJ_G0015919.1 mouse_genomes_project 1 74709231 74711136 + MGP_C3HHeJ_P0020266 protein_coding protein_coding MGP_C3HHeJ_T0019667.1 MGP_C3HHeJ_G0015809.1 mouse_genomes_project 1 56962355 56971749 + MGP_C3HHeJ_P0019667 1700066M21Rik protein_coding protein_coding MGP_C3HHeJ_T0019668.1 MGP_C3HHeJ_G0015809.1 mouse_genomes_project 1 56962368 56964898 + 1700066M21Rik protein_coding processed_transcript MGP_C3HHeJ_T0019669.1 MGP_C3HHeJ_G0015809.1 mouse_genomes_project 1 56962375 56964814 + 1700066M21Rik protein_coding processed_transcript MGP_C3HHeJ_T0021667.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133064558 133089956 - MGP_C3HHeJ_P0021667 protein_coding protein_coding MGP_C3HHeJ_T0021668.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133064565 133067622 - protein_coding retained_intron MGP_C3HHeJ_T0021669.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133065654 133104824 - MGP_C3HHeJ_P0021669 protein_coding protein_coding MGP_C3HHeJ_T0021670.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133066391 133089957 - MGP_C3HHeJ_P0021670 protein_coding protein_coding MGP_C3HHeJ_T0021671.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133066391 133089957 - MGP_C3HHeJ_P0021671 protein_coding protein_coding MGP_C3HHeJ_T0021672.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073073 133089956 - MGP_C3HHeJ_P0021672 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021673.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073073 133089956 - MGP_C3HHeJ_P0021673 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021674.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073073 133089956 - MGP_C3HHeJ_P0021674 protein_coding protein_coding MGP_C3HHeJ_T0021675.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133073261 133091349 - MGP_C3HHeJ_P0021675 protein_coding protein_coding MGP_C3HHeJ_T0021676.1 MGP_C3HHeJ_G0016207.1 mouse_genomes_project 1 133082960 133092766 - MGP_C3HHeJ_P0021676 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000472.1 MGP_C3HHeJ_G0000419.1 mouse_genomes_project 1 66765211 66769811 + TEC TEC MGP_C3HHeJ_T0011748.1 MGP_C3HHeJ_G0009852.1 mouse_genomes_project 1 288958 289436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020342.1 MGP_C3HHeJ_G0015931.1 mouse_genomes_project 1 75108338 75121573 + MGP_C3HHeJ_P0020342 Wnt6 protein_coding protein_coding MGP_C3HHeJ_T0020343.1 MGP_C3HHeJ_G0015931.1 mouse_genomes_project 1 75118689 75120853 + Wnt6 protein_coding retained_intron MGP_C3HHeJ_T0009399.1 MGP_C3HHeJ_G0007532.1 mouse_genomes_project 1 46564638 46564743 - Mir6350 miRNA miRNA MGP_C3HHeJ_T0002712.1 MGP_C3HHeJ_G0002582.1 mouse_genomes_project 1 34798403 34799107 - Gm38033 antisense antisense MGP_C3HHeJ_T0005893.1 MGP_C3HHeJ_G0004929.1 mouse_genomes_project 1 167216195 167219349 + Gm29500 lincRNA lincRNA MGP_C3HHeJ_T0009377.1 MGP_C3HHeJ_G0007510.1 mouse_genomes_project 1 5894820 5894930 + Gm24276 miRNA miRNA MGP_C3HHeJ_T0005839.1 MGP_C3HHeJ_G0004889.1 mouse_genomes_project 1 139170499 139188719 + Gm37799 lincRNA lincRNA MGP_C3HHeJ_T0021219.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660834 94681846 + MGP_C3HHeJ_P0021219 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021220.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660837 94683233 + MGP_C3HHeJ_P0021220 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021221.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660856 94691528 + MGP_C3HHeJ_P0021221 Sept2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021222.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660865 94680483 + Sept2 protein_coding retained_intron MGP_C3HHeJ_T0021223.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660879 94680089 + MGP_C3HHeJ_P0021223 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021224.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660903 94664215 + Sept2 protein_coding retained_intron MGP_C3HHeJ_T0021225.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660903 94683237 + MGP_C3HHeJ_P0021225 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021226.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94660952 94683262 + MGP_C3HHeJ_P0021226 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021227.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94661064 94681764 + MGP_C3HHeJ_P0021227 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021228.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94661067 94681846 + MGP_C3HHeJ_P0021228 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021229.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94661317 94683260 + MGP_C3HHeJ_P0021229 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021230.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94687920 94689747 + Sept2 protein_coding retained_intron MGP_C3HHeJ_T0021231.1 MGP_C3HHeJ_G0016109.1 mouse_genomes_project 1 94688295 94690074 + MGP_C3HHeJ_P0021231 Sept2 protein_coding protein_coding MGP_C3HHeJ_T0021427.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602186 + MGP_C3HHeJ_P0021427 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021428.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602254 + MGP_C3HHeJ_P0021428 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021429.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602186 + MGP_C3HHeJ_P0021429 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021430.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120379839 120602186 + MGP_C3HHeJ_P0021430 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021431.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380125 120496958 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021432.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380243 120599955 + MGP_C3HHeJ_P0021432 Clasp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021433.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380252 120600372 + MGP_C3HHeJ_P0021433 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021434.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380252 120600372 + MGP_C3HHeJ_P0021434 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021435.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380252 120602248 + MGP_C3HHeJ_P0021435 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021436.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380253 120600529 + MGP_C3HHeJ_P0021436 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021437.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380254 120501282 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021438.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380270 120599955 + MGP_C3HHeJ_P0021438 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021439.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120380314 120601994 + MGP_C3HHeJ_P0021439 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021440.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120410861 120602257 + MGP_C3HHeJ_P0021440 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021441.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120411025 120605351 + MGP_C3HHeJ_P0021441 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021442.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120411025 120599902 + MGP_C3HHeJ_P0021442 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021443.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120453574 120491512 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021444.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120463595 120599889 + Clasp1 protein_coding processed_transcript MGP_C3HHeJ_T0021445.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120463650 120497641 + Clasp1 protein_coding processed_transcript MGP_C3HHeJ_T0021446.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120464411 120495135 + Clasp1 protein_coding processed_transcript MGP_C3HHeJ_T0021447.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120465596 120498662 + MGP_C3HHeJ_P0021447 Clasp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021448.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120476606 120599927 + MGP_C3HHeJ_P0021448 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021449.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120503944 120520302 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021450.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120506424 120542330 + MGP_C3HHeJ_P0021450 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021451.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120526523 120602214 + MGP_C3HHeJ_P0021451 Clasp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021452.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120529210 120531935 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021453.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120541629 120542349 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021454.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120542395 120574887 + MGP_C3HHeJ_P0021454 Clasp1 protein_coding protein_coding MGP_C3HHeJ_T0021455.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120548647 120550739 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0021456.1 MGP_C3HHeJ_G0016160.1 mouse_genomes_project 1 120597441 120602186 + Clasp1 protein_coding retained_intron MGP_C3HHeJ_T0005570.1 MGP_C3HHeJ_G0004681.1 mouse_genomes_project 1 4649192 4671846 + Gm30414 lincRNA lincRNA MGP_C3HHeJ_T0011990.1 MGP_C3HHeJ_G0010094.1 mouse_genomes_project 1 65459049 65459454 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023951.1 MGP_C3HHeJ_G0016697.1 mouse_genomes_project 1 196408289 196414214 + MGP_C3HHeJ_P0023951 Spata45 protein_coding protein_coding MGP_C3HHeJ_T0023952.1 MGP_C3HHeJ_G0016697.1 mouse_genomes_project 1 196408469 196414221 + MGP_C3HHeJ_P0023952 Spata45 protein_coding protein_coding MGP_C3HHeJ_T0005828.1 MGP_C3HHeJ_G0004878.1 mouse_genomes_project 1 134634472 134637221 - 1700037F24Rik lincRNA lincRNA MGP_C3HHeJ_T0000415.1 MGP_C3HHeJ_G0000362.1 mouse_genomes_project 1 35170967 35171110 - TEC TEC MGP_C3HHeJ_T0018699.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10084896 10210233 - MGP_C3HHeJ_P0018699 Slco5a1 protein_coding protein_coding MGP_C3HHeJ_T0018700.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10092726 10210652 - MGP_C3HHeJ_P0018700 Slco5a1 protein_coding protein_coding MGP_C3HHeJ_T0018701.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10092726 10210652 - MGP_C3HHeJ_P0018701 Slco5a1 protein_coding protein_coding MGP_C3HHeJ_T0018702.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10094369 10138803 - Slco5a1 protein_coding processed_transcript MGP_C3HHeJ_T0018703.1 MGP_C3HHeJ_G0015611.1 mouse_genomes_project 1 10194649 10210915 - Slco5a1 protein_coding processed_transcript MGP_C3HHeJ_T0000577.1 MGP_C3HHeJ_G0000524.1 mouse_genomes_project 1 128278897 128280219 - TEC TEC MGP_C3HHeJ_T0023751.1 MGP_C3HHeJ_G0016658.1 mouse_genomes_project 1 187884651 187886706 - MGP_C3HHeJ_P0023751 Ccdc185 protein_coding protein_coding MGP_C3HHeJ_T0019843.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446855 59454551 + Nop58 protein_coding processed_transcript MGP_C3HHeJ_T0019844.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446861 59475351 + MGP_C3HHeJ_P0019844 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019845.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446869 59458744 + MGP_C3HHeJ_P0019845 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019846.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446887 59454573 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019847.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446890 59452874 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019848.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446893 59482866 + MGP_C3HHeJ_P0019848 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019849.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446905 59458719 + MGP_C3HHeJ_P0019849 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019850.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59446938 59461089 + MGP_C3HHeJ_P0019850 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019851.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59452063 59461053 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019852.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59454328 59468050 + Nop58 protein_coding retained_intron MGP_C3HHeJ_T0019853.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59458693 59468002 + MGP_C3HHeJ_P0019853 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019854.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59461082 59470905 + MGP_C3HHeJ_P0019854 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019855.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59467999 59472940 + MGP_C3HHeJ_P0019855 Nop58 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019856.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59468038 59475120 + MGP_C3HHeJ_P0019856 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0019857.1 MGP_C3HHeJ_G0015839.1 mouse_genomes_project 1 59468549 59475121 + MGP_C3HHeJ_P0019857 Nop58 protein_coding protein_coding MGP_C3HHeJ_T0023846.1 MGP_C3HHeJ_G0016678.1 mouse_genomes_project 1 190634099 190647973 + MGP_C3HHeJ_P0023846 Slc30a10 protein_coding protein_coding MGP_C3HHeJ_T0005980.1 MGP_C3HHeJ_G0004998.1 mouse_genomes_project 1 196611623 196613005 + D730003I15Rik lincRNA lincRNA MGP_C3HHeJ_T0005981.1 MGP_C3HHeJ_G0004998.1 mouse_genomes_project 1 196611643 196613310 + D730003I15Rik lincRNA lincRNA MGP_C3HHeJ_T0101582.1 MGP_C3HHeJ_G0039548.1 mouse_genomes_project 1 133042609 133058849 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022040.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137870642 137890192 - MGP_C3HHeJ_P0022040 Timm17a protein_coding protein_coding MGP_C3HHeJ_T0022041.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137877175 137886274 - Timm17a protein_coding retained_intron MGP_C3HHeJ_T0022042.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137879937 137890105 - MGP_C3HHeJ_P0022042 Timm17a protein_coding protein_coding MGP_C3HHeJ_T0022043.1 MGP_C3HHeJ_G0016290.1 mouse_genomes_project 1 137885559 137887761 - MGP_C3HHeJ_P0022043 Timm17a protein_coding protein_coding MGP_C3HHeJ_T0012255.1 MGP_C3HHeJ_G0010359.1 mouse_genomes_project 1 188479641 188480033 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098670.1 MGP_C3HHeJ_G0036864.1 mouse_genomes_project 1 175443961 175444077 - Gm24871 snRNA snRNA MGP_C3HHeJ_T0005716.1 MGP_C3HHeJ_G0004786.1 mouse_genomes_project 1 73900986 74025777 - 6030407O03Rik lincRNA lincRNA MGP_C3HHeJ_T0005717.1 MGP_C3HHeJ_G0004786.1 mouse_genomes_project 1 73900986 74164623 - 6030407O03Rik lincRNA lincRNA MGP_C3HHeJ_T0005810.1 MGP_C3HHeJ_G0004864.1 mouse_genomes_project 1 122912658 122923469 - Gm29348 lincRNA lincRNA MGP_C3HHeJ_T0018958.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31907483 31919584 - MGP_C3HHeJ_P0018958 Bag2 protein_coding protein_coding MGP_C3HHeJ_T0018959.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31908738 31910719 - Bag2 protein_coding retained_intron MGP_C3HHeJ_T0018960.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31908801 31919530 - MGP_C3HHeJ_P0018960 Bag2 protein_coding protein_coding MGP_C3HHeJ_T0018961.1 MGP_C3HHeJ_G0015675.1 mouse_genomes_project 1 31918563 31919516 - Bag2 protein_coding retained_intron MGP_C3HHeJ_T0011943.1 MGP_C3HHeJ_G0010047.1 mouse_genomes_project 1 54617353 54618344 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011850.1 MGP_C3HHeJ_G0009954.1 mouse_genomes_project 1 28862034 28862481 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098674.1 MGP_C3HHeJ_G0036868.1 mouse_genomes_project 1 180403444 180403620 + Gm25560 snRNA snRNA MGP_C3HHeJ_T0009404.1 MGP_C3HHeJ_G0007537.1 mouse_genomes_project 1 60441235 60441341 - Gm23762 miRNA miRNA MGP_C3HHeJ_T0002941.1 MGP_C3HHeJ_G0002757.1 mouse_genomes_project 1 200458290 200479177 - Gm16897 antisense antisense MGP_C3HHeJ_T0011900.1 MGP_C3HHeJ_G0010004.1 mouse_genomes_project 1 43182253 43182562 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098607.1 MGP_C3HHeJ_G0036801.1 mouse_genomes_project 1 31335319 31335429 + Gm24901 snRNA snRNA MGP_C3HHeJ_T0009451.1 MGP_C3HHeJ_G0007584.1 mouse_genomes_project 1 157190145 157190256 + Mir8114 miRNA miRNA MGP_C3HHeJ_T0011966.1 MGP_C3HHeJ_G0010070.1 mouse_genomes_project 1 60614757 60615584 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002757.1 MGP_C3HHeJ_G0002617.1 mouse_genomes_project 1 63998022 64010132 + Gm13748 antisense antisense MGP_C3HHeJ_T0023799.1 MGP_C3HHeJ_G0016667.1 mouse_genomes_project 1 189091143 189119100 + MGP_C3HHeJ_P0023799 Dusp10 protein_coding protein_coding MGP_C3HHeJ_T0023802.1 MGP_C3HHeJ_G0016667.1 mouse_genomes_project 1 189114722 189163112 + MGP_C3HHeJ_P0023802 Dusp10 protein_coding protein_coding MGP_C3HHeJ_T0023910.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195031265 195150852 + Ptpn14 protein_coding retained_intron MGP_C3HHeJ_T0023911.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195092262 195182953 + MGP_C3HHeJ_P0023911 Ptpn14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023912.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195093364 195162219 + Ptpn14 protein_coding retained_intron MGP_C3HHeJ_T0023913.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195093400 195182966 + MGP_C3HHeJ_P0023913 Ptpn14 protein_coding protein_coding MGP_C3HHeJ_T0023914.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195155285 195162706 + Ptpn14 protein_coding retained_intron MGP_C3HHeJ_T0023915.1 MGP_C3HHeJ_G0016690.1 mouse_genomes_project 1 195175146 195175921 + Ptpn14 protein_coding processed_transcript MGP_C3HHeJ_T0016750.1 MGP_C3HHeJ_G0014849.1 mouse_genomes_project 1 32343507 32356660 - Gm26788 processed_transcript antisense MGP_C3HHeJ_T0016751.1 MGP_C3HHeJ_G0014849.1 mouse_genomes_project 1 32353417 32356835 - Gm26788 processed_transcript retained_intron MGP_C3HHeJ_T0000527.1 MGP_C3HHeJ_G0000474.1 mouse_genomes_project 1 88713157 88713981 + TEC TEC MGP_C3HHeJ_T0005583.1 MGP_C3HHeJ_G0004690.1 mouse_genomes_project 1 16721022 16722063 + Gm28340 lincRNA lincRNA MGP_C3HHeJ_T0101568.1 MGP_C3HHeJ_G0039534.1 mouse_genomes_project 1 93741166 93741212 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023894.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194487091 194631349 - MGP_C3HHeJ_P0023894 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023895.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194487098 194692685 - MGP_C3HHeJ_P0023895 Kcnk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023896.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194487098 194630989 - MGP_C3HHeJ_P0023896 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023897.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488905 194692630 - MGP_C3HHeJ_P0023897 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023898.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488914 194692625 - MGP_C3HHeJ_P0023898 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023899.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488951 194630512 - MGP_C3HHeJ_P0023899 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023900.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194488951 194630864 - MGP_C3HHeJ_P0023900 Kcnk2 protein_coding protein_coding MGP_C3HHeJ_T0023901.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194489186 194494370 - Kcnk2 protein_coding processed_transcript MGP_C3HHeJ_T0023902.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194489223 194522844 - Kcnk2 protein_coding processed_transcript MGP_C3HHeJ_T0023903.1 MGP_C3HHeJ_G0016688.1 mouse_genomes_project 1 194625359 194634136 - Kcnk2 protein_coding processed_transcript MGP_C3HHeJ_T0000731.1 MGP_C3HHeJ_G0000675.1 mouse_genomes_project 1 183214185 183216055 + TEC TEC MGP_C3HHeJ_T0098327.1 MGP_C3HHeJ_G0036538.1 mouse_genomes_project 1 141709991 141711571 + 4930596I21Rik sense_intronic sense_intronic MGP_C3HHeJ_T0005968.1 MGP_C3HHeJ_G0004988.1 mouse_genomes_project 1 191722210 191770795 - A730004F24Rik lincRNA lincRNA MGP_C3HHeJ_T0005969.1 MGP_C3HHeJ_G0004988.1 mouse_genomes_project 1 191722254 191771004 - A730004F24Rik lincRNA lincRNA MGP_C3HHeJ_T0022868.1 MGP_C3HHeJ_G0016443.1 mouse_genomes_project 1 167671571 167680997 + MGP_C3HHeJ_P0022868 Sele protein_coding protein_coding MGP_C3HHeJ_T0005943.1 MGP_C3HHeJ_G0004969.1 mouse_genomes_project 1 187818803 187819302 + Gm37218 lincRNA lincRNA MGP_C3HHeJ_T0012003.1 MGP_C3HHeJ_G0010107.1 mouse_genomes_project 1 71696693 71696771 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005811.1 MGP_C3HHeJ_G0004865.1 mouse_genomes_project 1 122922656 122923991 + Gm29347 lincRNA lincRNA MGP_C3HHeJ_T0020776.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852194 86948380 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020777.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852198 86914607 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020778.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852198 86961902 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020779.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852200 86868921 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020780.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852212 86880730 + Armc9 protein_coding processed_transcript MGP_C3HHeJ_T0020781.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852212 86979770 + MGP_C3HHeJ_P0020781 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020782.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852213 86863226 + MGP_C3HHeJ_P0020782 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020783.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852224 86981342 + MGP_C3HHeJ_P0020783 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020784.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852229 86954555 + MGP_C3HHeJ_P0020784 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020785.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86852233 86876635 + Armc9 protein_coding retained_intron MGP_C3HHeJ_T0020786.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86897287 86954458 + MGP_C3HHeJ_P0020786 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020787.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86903410 86954555 + MGP_C3HHeJ_P0020787 Armc9 protein_coding protein_coding MGP_C3HHeJ_T0020788.1 MGP_C3HHeJ_G0016010.1 mouse_genomes_project 1 86946619 86971718 + MGP_C3HHeJ_P0020788 Armc9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005743.1 MGP_C3HHeJ_G0004807.1 mouse_genomes_project 1 87901173 87901936 + lincRNA lincRNA MGP_C3HHeJ_T0009414.1 MGP_C3HHeJ_G0007547.1 mouse_genomes_project 1 74711376 74711461 + Mir26b miRNA miRNA MGP_C3HHeJ_T0012118.1 MGP_C3HHeJ_G0010222.1 mouse_genomes_project 1 122887908 122888118 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011882.1 MGP_C3HHeJ_G0009986.1 mouse_genomes_project 1 34204144 34205048 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011948.1 MGP_C3HHeJ_G0010052.1 mouse_genomes_project 1 54887970 54888863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098263.1 MGP_C3HHeJ_G0036475.1 mouse_genomes_project 1 162811306 162811446 + Scarna3a scaRNA scaRNA MGP_C3HHeJ_T0002877.1 MGP_C3HHeJ_G0002707.1 mouse_genomes_project 1 170099474 170100129 - Gm15853 antisense antisense MGP_C3HHeJ_T0000425.1 MGP_C3HHeJ_G0000372.1 mouse_genomes_project 1 38503550 38504892 - TEC TEC MGP_C3HHeJ_T0099889.1 MGP_C3HHeJ_G0038083.1 mouse_genomes_project 1 142851206 142851348 + Gm26048 snoRNA snoRNA MGP_C3HHeJ_T0020179.1 MGP_C3HHeJ_G0015900.1 mouse_genomes_project 1 72534308 72622643 + MGP_C3HHeJ_P0020179 Xrcc5 protein_coding protein_coding MGP_C3HHeJ_T0101544.1 MGP_C3HHeJ_G0039510.1 mouse_genomes_project 1 18813718 18818783 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022132.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138822117 138842757 - MGP_C3HHeJ_P0022132 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0022133.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138828852 138838864 - MGP_C3HHeJ_P0022133 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0022134.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138828890 138838885 - MGP_C3HHeJ_P0022134 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0022135.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138832137 138836237 - 5730559C18Rik protein_coding retained_intron MGP_C3HHeJ_T0022136.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138834767 138842612 - MGP_C3HHeJ_P0022136 5730559C18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022137.1 MGP_C3HHeJ_G0016307.1 mouse_genomes_project 1 138834788 138838594 - MGP_C3HHeJ_P0022137 5730559C18Rik protein_coding protein_coding MGP_C3HHeJ_T0023381.1 MGP_C3HHeJ_G0016563.1 mouse_genomes_project 1 177462732 177464982 - MGP_C3HHeJ_P0023381 Olfr1408 protein_coding protein_coding MGP_C3HHeJ_T0023382.1 MGP_C3HHeJ_G0016563.1 mouse_genomes_project 1 177462732 177471383 - MGP_C3HHeJ_P0023382 Olfr1408 protein_coding protein_coding MGP_C3HHeJ_T0098649.1 MGP_C3HHeJ_G0036843.1 mouse_genomes_project 1 132974351 132974458 - Gm23623 snRNA snRNA MGP_C3HHeJ_T0018487.1 MGP_C3HHeJ_G0015578.1 mouse_genomes_project 1 248980 259441 - Xkr4 protein_coding processed_transcript MGP_C3HHeJ_T0018488.1 MGP_C3HHeJ_G0015578.1 mouse_genomes_project 1 249602 258729 - Xkr4 protein_coding processed_transcript MGP_C3HHeJ_T0018489.1 MGP_C3HHeJ_G0015578.1 mouse_genomes_project 1 257578 726432 - MGP_C3HHeJ_P0018489 Xkr4 protein_coding protein_coding MGP_C3HHeJ_T0019078.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34686442 34707361 - MGP_C3HHeJ_P0019078 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019079.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34688636 34712932 - MGP_C3HHeJ_P0019079 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019080.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34689765 34709533 - Lman2l protein_coding retained_intron MGP_C3HHeJ_T0019081.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34689765 34712932 - MGP_C3HHeJ_P0019081 Lman2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019082.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34689765 34712932 - MGP_C3HHeJ_P0019082 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019083.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34691111 34694972 - MGP_C3HHeJ_P0019083 Lman2l protein_coding protein_coding MGP_C3HHeJ_T0019084.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34694997 34712932 - MGP_C3HHeJ_P0019084 Lman2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019085.1 MGP_C3HHeJ_G0015694.1 mouse_genomes_project 1 34711409 34712918 - Lman2l protein_coding retained_intron MGP_C3HHeJ_T0020698.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 84974645 85300484 - MGP_C3HHeJ_P0020698 Dner protein_coding protein_coding MGP_C3HHeJ_T0020699.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 85142081 85300282 - Dner protein_coding retained_intron MGP_C3HHeJ_T0020700.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 85185062 85245357 - MGP_C3HHeJ_P0020700 Dner protein_coding protein_coding MGP_C3HHeJ_T0020701.1 MGP_C3HHeJ_G0015995.1 mouse_genomes_project 1 85187351 85228735 - MGP_C3HHeJ_P0020701 Dner protein_coding protein_coding MGP_C3HHeJ_T0012249.1 MGP_C3HHeJ_G0010353.1 mouse_genomes_project 1 186454816 186455109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011768.1 MGP_C3HHeJ_G0009872.1 mouse_genomes_project 1 4130188 4130347 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019861.1 MGP_C3HHeJ_G0015841.1 mouse_genomes_project 1 59699283 59776501 + MGP_C3HHeJ_P0019861 Fam117b protein_coding protein_coding MGP_C3HHeJ_T0019862.1 MGP_C3HHeJ_G0015841.1 mouse_genomes_project 1 59760219 59772670 + MGP_C3HHeJ_P0019862 Fam117b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019863.1 MGP_C3HHeJ_G0015841.1 mouse_genomes_project 1 59770335 59772093 + Fam117b protein_coding retained_intron MGP_C3HHeJ_T0005773.1 MGP_C3HHeJ_G0004835.1 mouse_genomes_project 1 96957645 96974257 - 4930598F16Rik lincRNA lincRNA MGP_C3HHeJ_T0000575.1 MGP_C3HHeJ_G0000522.1 mouse_genomes_project 1 127035144 127038171 - TEC TEC MGP_C3HHeJ_T0000467.1 MGP_C3HHeJ_G0000414.1 mouse_genomes_project 1 63110763 63111242 - TEC TEC MGP_C3HHeJ_T0000590.1 MGP_C3HHeJ_G0000537.1 mouse_genomes_project 1 132128634 132132475 + TEC TEC MGP_C3HHeJ_T0011995.1 MGP_C3HHeJ_G0010099.1 mouse_genomes_project 1 66773604 66776138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020181.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72864415 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020182.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72831288 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020183.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72828143 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020184.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72870653 + MGP_C3HHeJ_P0020184 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020185.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72814194 + MGP_C3HHeJ_P0020185 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020186.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811452 72827703 + MGP_C3HHeJ_P0020186 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020187.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72811816 72870653 + MGP_C3HHeJ_P0020187 Smarcal1 protein_coding protein_coding MGP_C3HHeJ_T0020188.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72813840 72864415 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020189.1 MGP_C3HHeJ_G0015902.1 mouse_genomes_project 1 72848549 72865795 + Smarcal1 protein_coding retained_intron MGP_C3HHeJ_T0020250.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74676181 74683224 + MGP_C3HHeJ_P0020250 Catip protein_coding protein_coding MGP_C3HHeJ_T0020251.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74676385 74681745 + MGP_C3HHeJ_P0020251 Catip protein_coding protein_coding MGP_C3HHeJ_T0020252.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74676461 74683301 + MGP_C3HHeJ_P0020252 Catip protein_coding protein_coding MGP_C3HHeJ_T0020253.1 MGP_C3HHeJ_G0015917.1 mouse_genomes_project 1 74678570 74680695 + Catip protein_coding retained_intron MGP_C3HHeJ_T0002853.1 MGP_C3HHeJ_G0002688.1 mouse_genomes_project 1 159626854 159628348 + 4930518J20Rik antisense antisense MGP_C3HHeJ_T0020972.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90450316 90910619 + MGP_C3HHeJ_P0020972 Agap1 protein_coding protein_coding MGP_C3HHeJ_T0020973.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90450384 90903003 + MGP_C3HHeJ_P0020973 Agap1 protein_coding protein_coding MGP_C3HHeJ_T0020974.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90450766 90455189 + Agap1 protein_coding retained_intron MGP_C3HHeJ_T0020975.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90578161 90908279 + MGP_C3HHeJ_P0020975 Agap1 protein_coding protein_coding MGP_C3HHeJ_T0020976.1 MGP_C3HHeJ_G0016056.1 mouse_genomes_project 1 90578672 90901896 + MGP_C3HHeJ_P0020976 Agap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0005827.1 MGP_C3HHeJ_G0004877.1 mouse_genomes_project 1 134459820 134492848 + Gm26892 lincRNA lincRNA MGP_C3HHeJ_T0099849.1 MGP_C3HHeJ_G0038043.1 mouse_genomes_project 1 59453818 59453905 + Snord70 snoRNA snoRNA MGP_C3HHeJ_T0019052.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565415 34576873 + MGP_C3HHeJ_P0019052 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019053.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34575958 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019054.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34577557 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019055.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34576884 + Arid5a protein_coding processed_transcript MGP_C3HHeJ_T0019056.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34578741 + MGP_C3HHeJ_P0019056 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019057.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34578198 + MGP_C3HHeJ_P0019057 Arid5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019058.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34581699 + MGP_C3HHeJ_P0019058 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019059.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34575112 + MGP_C3HHeJ_P0019059 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019060.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565436 34578196 + MGP_C3HHeJ_P0019060 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019061.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565440 34570451 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019062.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565461 34574249 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019063.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34565515 34577873 + MGP_C3HHeJ_P0019063 Arid5a protein_coding protein_coding MGP_C3HHeJ_T0019064.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34573674 34575806 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0019065.1 MGP_C3HHeJ_G0015691.1 mouse_genomes_project 1 34574696 34575802 + Arid5a protein_coding retained_intron MGP_C3HHeJ_T0009390.1 MGP_C3HHeJ_G0007523.1 mouse_genomes_project 1 32616641 32616720 - Mir5103 miRNA miRNA MGP_C3HHeJ_T0012254.1 MGP_C3HHeJ_G0010358.1 mouse_genomes_project 1 188423497 188424412 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012035.1 MGP_C3HHeJ_G0010139.1 mouse_genomes_project 1 87196863 87197211 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021987.1 MGP_C3HHeJ_G0016279.1 mouse_genomes_project 1 137069214 137077822 - MGP_C3HHeJ_P0021987 Mgat4e protein_coding protein_coding MGP_C3HHeJ_T0021988.1 MGP_C3HHeJ_G0016279.1 mouse_genomes_project 1 137069220 137075237 - MGP_C3HHeJ_P0021988 Mgat4e protein_coding protein_coding MGP_C3HHeJ_T0021989.1 MGP_C3HHeJ_G0016279.1 mouse_genomes_project 1 137069230 137075165 - MGP_C3HHeJ_P0021989 Mgat4e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022011.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137518152 137531998 + MGP_C3HHeJ_P0022011 Ube2t protein_coding unknown_likely_coding MGP_C3HHeJ_T0022012.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137518252 137532214 + MGP_C3HHeJ_P0022012 Ube2t protein_coding protein_coding MGP_C3HHeJ_T0022013.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137518278 137521688 + Ube2t protein_coding retained_intron MGP_C3HHeJ_T0022014.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137528055 137532211 + MGP_C3HHeJ_P0022014 Ube2t protein_coding protein_coding MGP_C3HHeJ_T0022015.1 MGP_C3HHeJ_G0016283.1 mouse_genomes_project 1 137530005 137530907 + Ube2t protein_coding retained_intron MGP_C3HHeJ_T0002805.1 MGP_C3HHeJ_G0002652.1 mouse_genomes_project 1 120451809 120453254 - antisense antisense MGP_C3HHeJ_T0002806.1 MGP_C3HHeJ_G0002652.1 mouse_genomes_project 1 120452656 120452734 - antisense antisense MGP_C3HHeJ_T0097960.1 MGP_C3HHeJ_G0036172.1 mouse_genomes_project 1 86351284 86351388 + n-R5s215 rRNA rRNA MGP_C3HHeJ_T0016820.1 MGP_C3HHeJ_G0014876.1 mouse_genomes_project 1 149820217 149825059 - A230059L01Rik processed_transcript antisense MGP_C3HHeJ_T0016821.1 MGP_C3HHeJ_G0014876.1 mouse_genomes_project 1 149823871 149826557 - A230059L01Rik processed_transcript TEC MGP_C3HHeJ_T0000513.1 MGP_C3HHeJ_G0000460.1 mouse_genomes_project 1 85270124 85274379 - TEC TEC MGP_C3HHeJ_T0002707.1 MGP_C3HHeJ_G0002578.1 mouse_genomes_project 1 32628018 32633182 - Gm28306 antisense antisense MGP_C3HHeJ_T0000579.1 MGP_C3HHeJ_G0000526.1 mouse_genomes_project 1 129467693 129469087 + TEC TEC MGP_C3HHeJ_T0022062.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138015805 138175868 - MGP_C3HHeJ_P0022062 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022063.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138015805 138175518 - MGP_C3HHeJ_P0022063 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022064.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138019985 138198369 - MGP_C3HHeJ_P0022064 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022065.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138035709 138037242 - Nav1 protein_coding retained_intron MGP_C3HHeJ_T0022066.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138038650 138051405 - MGP_C3HHeJ_P0022066 Nav1 protein_coding protein_coding MGP_C3HHeJ_T0022067.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138041105 138044549 - Nav1 protein_coding retained_intron MGP_C3HHeJ_T0022068.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138041105 138097526 - Nav1 protein_coding retained_intron MGP_C3HHeJ_T0022069.1 MGP_C3HHeJ_G0016294.1 mouse_genomes_project 1 138041988 138097593 - Nav1 protein_coding processed_transcript MGP_C3HHeJ_T0000684.1 MGP_C3HHeJ_G0000629.1 mouse_genomes_project 1 164184076 164186366 - TEC TEC MGP_C3HHeJ_T0011930.1 MGP_C3HHeJ_G0010034.1 mouse_genomes_project 1 50534828 50535853 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018822.1 MGP_C3HHeJ_G0015641.1 mouse_genomes_project 1 18189875 18193466 + MGP_C3HHeJ_P0018822 Il17a protein_coding protein_coding MGP_C3HHeJ_T0011921.1 MGP_C3HHeJ_G0010025.1 mouse_genomes_project 1 47989514 47990525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002736.1 MGP_C3HHeJ_G0002601.1 mouse_genomes_project 1 50357612 50361354 - Gm28319 antisense antisense MGP_C3HHeJ_T0023425.1 MGP_C3HHeJ_G0016584.1 mouse_genomes_project 1 178660482 178666099 + MGP_C3HHeJ_P0023425 Olfr429 protein_coding protein_coding MGP_C3HHeJ_T0023426.1 MGP_C3HHeJ_G0016584.1 mouse_genomes_project 1 178665156 178666099 + MGP_C3HHeJ_P0023426 Olfr429 protein_coding protein_coding MGP_C3HHeJ_T0022478.1 MGP_C3HHeJ_G0016375.1 mouse_genomes_project 1 158426245 158429521 - MGP_C3HHeJ_P0022478 Ier5 protein_coding protein_coding MGP_C3HHeJ_T0023383.1 MGP_C3HHeJ_G0016564.1 mouse_genomes_project 1 177513266 177514329 - MGP_C3HHeJ_P0023383 Olfr1406 protein_coding protein_coding MGP_C3HHeJ_T0023384.1 MGP_C3HHeJ_G0016564.1 mouse_genomes_project 1 177513993 177520392 - MGP_C3HHeJ_P0023384 Olfr1406 protein_coding protein_coding MGP_C3HHeJ_T0000421.1 MGP_C3HHeJ_G0000368.1 mouse_genomes_project 1 36052428 36054645 - TEC TEC MGP_C3HHeJ_T0009405.1 MGP_C3HHeJ_G0007538.1 mouse_genomes_project 1 62870468 62870573 + Gm44468 miRNA miRNA MGP_C3HHeJ_T0020030.1 MGP_C3HHeJ_G0015871.1 mouse_genomes_project 1 64979390 64982438 - MGP_C3HHeJ_P0020030 protein_coding protein_coding MGP_C3HHeJ_T0020514.1 MGP_C3HHeJ_G0015957.1 mouse_genomes_project 1 75739858 75765253 + MGP_C3HHeJ_P0020514 Asic4 protein_coding protein_coding MGP_C3HHeJ_T0020515.1 MGP_C3HHeJ_G0015957.1 mouse_genomes_project 1 75740121 75765256 + MGP_C3HHeJ_P0020515 Asic4 protein_coding protein_coding MGP_C3HHeJ_T0009461.1 MGP_C3HHeJ_G0007594.1 mouse_genomes_project 1 171095869 171095925 - Gm25911 miRNA miRNA MGP_C3HHeJ_T0022437.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156911234 156962478 + MGP_C3HHeJ_P0022437 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022438.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156919151 156953175 + MGP_C3HHeJ_P0022438 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022439.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156922686 156955140 + MGP_C3HHeJ_P0022439 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022440.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923373 156954932 + MGP_C3HHeJ_P0022440 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022441.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923411 156957733 + MGP_C3HHeJ_P0022441 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022442.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923692 156953225 + MGP_C3HHeJ_P0022442 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022443.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923756 156953230 + MGP_C3HHeJ_P0022443 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022444.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923772 156955101 + MGP_C3HHeJ_P0022444 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022445.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156923808 156959822 + MGP_C3HHeJ_P0022445 Rgs8 protein_coding protein_coding MGP_C3HHeJ_T0022446.1 MGP_C3HHeJ_G0016366.1 mouse_genomes_project 1 156925588 156929943 + Rgs8 protein_coding processed_transcript MGP_C3HHeJ_T0012252.1 MGP_C3HHeJ_G0010356.1 mouse_genomes_project 1 187506777 187507770 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009421.1 MGP_C3HHeJ_G0007554.1 mouse_genomes_project 1 83376329 83376382 + Gm22396 miRNA miRNA MGP_C3HHeJ_T0098640.1 MGP_C3HHeJ_G0036834.1 mouse_genomes_project 1 109536834 109536941 - Gm24267 snRNA snRNA MGP_C3HHeJ_T0098685.1 MGP_C3HHeJ_G0036879.1 mouse_genomes_project 1 198153022 198153138 + Gm22265 snRNA snRNA MGP_C3HHeJ_T0022904.1 MGP_C3HHeJ_G0016453.1 mouse_genomes_project 1 168585594 168589478 - MGP_C3HHeJ_P0022904 Xcl1 protein_coding protein_coding MGP_C3HHeJ_T0012157.1 MGP_C3HHeJ_G0010261.1 mouse_genomes_project 1 142847899 142848320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099875.1 MGP_C3HHeJ_G0038069.1 mouse_genomes_project 1 109656448 109656580 + Gm22438 snoRNA snoRNA MGP_C3HHeJ_T0012133.1 MGP_C3HHeJ_G0010237.1 mouse_genomes_project 1 129264187 129266037 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018736.1 MGP_C3HHeJ_G0015620.1 mouse_genomes_project 1 12612241 13059854 + MGP_C3HHeJ_P0018736 Kcnb2 protein_coding protein_coding MGP_C3HHeJ_T0018737.1 MGP_C3HHeJ_G0015620.1 mouse_genomes_project 1 12637769 13070968 + MGP_C3HHeJ_P0018737 Kcnb2 protein_coding protein_coding MGP_C3HHeJ_T0019987.1 MGP_C3HHeJ_G0015861.1 mouse_genomes_project 1 63622837 63654250 - MGP_C3HHeJ_P0019987 Mdh1b protein_coding protein_coding MGP_C3HHeJ_T0000709.1 MGP_C3HHeJ_G0000654.1 mouse_genomes_project 1 175269807 175271064 + TEC TEC MGP_C3HHeJ_T0023916.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195193314 195237732 - MGP_C3HHeJ_P0023916 Smyd2 protein_coding protein_coding MGP_C3HHeJ_T0023917.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195193316 195201825 - Smyd2 protein_coding processed_transcript MGP_C3HHeJ_T0023918.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195193464 195195195 - Smyd2 protein_coding retained_intron MGP_C3HHeJ_T0023919.1 MGP_C3HHeJ_G0016691.1 mouse_genomes_project 1 195197868 195237622 - Smyd2 protein_coding retained_intron MGP_C3HHeJ_T0020101.1 MGP_C3HHeJ_G0015885.1 mouse_genomes_project 1 66817900 66849086 - MGP_C3HHeJ_P0020101 Acadl protein_coding protein_coding MGP_C3HHeJ_T0020102.1 MGP_C3HHeJ_G0015885.1 mouse_genomes_project 1 66831527 66844159 - Acadl protein_coding processed_transcript MGP_C3HHeJ_T0012203.1 MGP_C3HHeJ_G0010307.1 mouse_genomes_project 1 162606858 162607341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000325.1 MGP_C3HHeJ_G0000275.1 mouse_genomes_project 1 645894 648837 - TEC TEC MGP_C3HHeJ_T0099822.1 MGP_C3HHeJ_G0038016.1 mouse_genomes_project 1 8270438 8270566 - Gm24173 snoRNA snoRNA MGP_C3HHeJ_T0011836.1 MGP_C3HHeJ_G0009940.1 mouse_genomes_project 1 22888949 22889392 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101584.1 MGP_C3HHeJ_G0039550.1 mouse_genomes_project 1 137047950 137052094 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011906.1 MGP_C3HHeJ_G0010010.1 mouse_genomes_project 1 44223560 44224533 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021059.1 MGP_C3HHeJ_G0016073.1 mouse_genomes_project 1 92442091 92449879 + MGP_C3HHeJ_P0021059 Fam132b protein_coding protein_coding MGP_C3HHeJ_T0021060.1 MGP_C3HHeJ_G0016073.1 mouse_genomes_project 1 92446355 92449754 + MGP_C3HHeJ_P0021060 Fam132b protein_coding protein_coding MGP_C3HHeJ_T0000514.1 MGP_C3HHeJ_G0000461.1 mouse_genomes_project 1 85405329 85407363 - TEC TEC MGP_C3HHeJ_T0019819.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58898674 58976181 - MGP_C3HHeJ_P0019819 Als2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019820.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58900216 58976241 - MGP_C3HHeJ_P0019820 Als2 protein_coding protein_coding MGP_C3HHeJ_T0019821.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58901348 58976103 - MGP_C3HHeJ_P0019821 Als2 protein_coding protein_coding MGP_C3HHeJ_T0019822.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58930294 58976241 - Als2 protein_coding retained_intron MGP_C3HHeJ_T0019823.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58954697 58976236 - MGP_C3HHeJ_P0019823 Als2 protein_coding protein_coding MGP_C3HHeJ_T0019824.1 MGP_C3HHeJ_G0015834.1 mouse_genomes_project 1 58955390 58958173 - Als2 protein_coding retained_intron MGP_C3HHeJ_T0005620.1 MGP_C3HHeJ_G0004722.1 mouse_genomes_project 1 40331257 40503204 + Gm29260 lincRNA lincRNA MGP_C3HHeJ_T0005621.1 MGP_C3HHeJ_G0004722.1 mouse_genomes_project 1 40481606 40483337 + Gm29260 lincRNA lincRNA MGP_C3HHeJ_T0021208.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94584548 94660646 - MGP_C3HHeJ_P0021208 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021209.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94587160 94625211 - MGP_C3HHeJ_P0021209 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021210.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94587400 94620324 - MGP_C3HHeJ_P0021210 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021211.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94607978 94625177 - Hdlbp protein_coding retained_intron MGP_C3HHeJ_T0021212.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94610428 94625207 - MGP_C3HHeJ_P0021212 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021213.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94610845 94620493 - MGP_C3HHeJ_P0021213 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021214.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94616651 94624957 - MGP_C3HHeJ_P0021214 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021215.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94616687 94660660 - MGP_C3HHeJ_P0021215 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021216.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94619829 94625174 - Hdlbp protein_coding retained_intron MGP_C3HHeJ_T0021217.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94620219 94660222 - MGP_C3HHeJ_P0021217 Hdlbp protein_coding protein_coding MGP_C3HHeJ_T0021218.1 MGP_C3HHeJ_G0016108.1 mouse_genomes_project 1 94657015 94660225 - Hdlbp protein_coding retained_intron MGP_C3HHeJ_T0019402.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42771492 42783746 - MGP_C3HHeJ_P0019402 Kdelc1 protein_coding protein_coding MGP_C3HHeJ_T0019403.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42771831 42783691 - Kdelc1 protein_coding retained_intron MGP_C3HHeJ_T0019404.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42771833 42783703 - MGP_C3HHeJ_P0019404 Kdelc1 protein_coding protein_coding MGP_C3HHeJ_T0019405.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42777028 42783703 - Kdelc1 protein_coding retained_intron MGP_C3HHeJ_T0019406.1 MGP_C3HHeJ_G0015758.1 mouse_genomes_project 1 42779728 42783639 - MGP_C3HHeJ_P0019406 Kdelc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002780.1 MGP_C3HHeJ_G0002632.1 mouse_genomes_project 1 86978583 87008324 - Gm16341 antisense antisense MGP_C3HHeJ_T0000564.1 MGP_C3HHeJ_G0000511.1 mouse_genomes_project 1 123764777 123765526 + TEC TEC MGP_C3HHeJ_T0002680.1 MGP_C3HHeJ_G0002562.1 mouse_genomes_project 1 3307492 3312921 - 4732440D04Rik antisense antisense MGP_C3HHeJ_T0002681.1 MGP_C3HHeJ_G0002562.1 mouse_genomes_project 1 3310920 3312218 - 4732440D04Rik antisense antisense MGP_C3HHeJ_T0002682.1 MGP_C3HHeJ_G0002562.1 mouse_genomes_project 1 3312239 3312920 - 4732440D04Rik antisense antisense MGP_C3HHeJ_T0099870.1 MGP_C3HHeJ_G0038064.1 mouse_genomes_project 1 103620351 103620483 - Gm24122 snoRNA snoRNA MGP_C3HHeJ_T0019050.1 MGP_C3HHeJ_G0015690.1 mouse_genomes_project 1 34520616 34529412 - MGP_C3HHeJ_P0019050 Neurl3 protein_coding protein_coding MGP_C3HHeJ_T0019051.1 MGP_C3HHeJ_G0015690.1 mouse_genomes_project 1 34524836 34530624 - MGP_C3HHeJ_P0019051 Neurl3 protein_coding protein_coding MGP_C3HHeJ_T0005912.1 MGP_C3HHeJ_G0004945.1 mouse_genomes_project 1 170733100 170735647 - Gm16701 lincRNA lincRNA MGP_C3HHeJ_T0022703.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527751 164530955 + Serpinc1 protein_coding retained_intron MGP_C3HHeJ_T0022704.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527772 164548597 + MGP_C3HHeJ_P0022704 Serpinc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022705.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527812 164558285 + MGP_C3HHeJ_P0022705 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022706.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164527854 164538778 + MGP_C3HHeJ_P0022706 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022707.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164533897 164548626 + MGP_C3HHeJ_P0022707 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022708.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164536206 164538868 + Serpinc1 protein_coding retained_intron MGP_C3HHeJ_T0022709.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164536662 164556081 + MGP_C3HHeJ_P0022709 Serpinc1 protein_coding protein_coding MGP_C3HHeJ_T0022710.1 MGP_C3HHeJ_G0016411.1 mouse_genomes_project 1 164538496 164554881 + MGP_C3HHeJ_P0022710 Serpinc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002772.1 MGP_C3HHeJ_G0002625.1 mouse_genomes_project 1 75537954 75543060 + Gm28294 antisense antisense MGP_C3HHeJ_T0021010.1 MGP_C3HHeJ_G0016064.1 mouse_genomes_project 1 92009345 92010265 + MGP_C3HHeJ_P0021010 Prlh protein_coding protein_coding MGP_C3HHeJ_T0000701.1 MGP_C3HHeJ_G0000646.1 mouse_genomes_project 1 169159636 169160670 + TEC TEC MGP_C3HHeJ_T0023438.1 MGP_C3HHeJ_G0016594.1 mouse_genomes_project 1 179019336 179026605 + MGP_C3HHeJ_P0023438 Olfr220 protein_coding protein_coding MGP_C3HHeJ_T0023439.1 MGP_C3HHeJ_G0016594.1 mouse_genomes_project 1 179025627 179026605 + MGP_C3HHeJ_P0023439 Olfr220 protein_coding protein_coding MGP_C3HHeJ_T0009384.1 MGP_C3HHeJ_G0007517.1 mouse_genomes_project 1 20880298 20880382 + Mir30c-2 miRNA miRNA MGP_C3HHeJ_T0005669.1 MGP_C3HHeJ_G0004751.1 mouse_genomes_project 1 59124080 59140710 + Gm29016 lincRNA lincRNA MGP_C3HHeJ_T0005647.1 MGP_C3HHeJ_G0004735.1 mouse_genomes_project 1 49583618 49584146 - Gm29665 lincRNA lincRNA MGP_C3HHeJ_T0011839.1 MGP_C3HHeJ_G0009943.1 mouse_genomes_project 1 24178965 24179616 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005671.1 MGP_C3HHeJ_G0004753.1 mouse_genomes_project 1 60588857 60593969 - Gm11579 lincRNA lincRNA MGP_C3HHeJ_T0022426.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156703623 156735474 - MGP_C3HHeJ_P0022426 Dhx9 protein_coding protein_coding MGP_C3HHeJ_T0022427.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156703623 156735526 - MGP_C3HHeJ_P0022427 Dhx9 protein_coding protein_coding MGP_C3HHeJ_T0022428.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156710498 156735511 - MGP_C3HHeJ_P0022428 Dhx9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022429.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156710504 156726005 - MGP_C3HHeJ_P0022429 Dhx9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022430.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156712207 156735517 - MGP_C3HHeJ_P0022430 Dhx9 protein_coding protein_coding MGP_C3HHeJ_T0022431.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156720060 156726019 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0022432.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156724704 156735524 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0022433.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156726142 156728416 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0022434.1 MGP_C3HHeJ_G0016364.1 mouse_genomes_project 1 156730236 156735500 - Dhx9 protein_coding retained_intron MGP_C3HHeJ_T0012006.1 MGP_C3HHeJ_G0010110.1 mouse_genomes_project 1 72318089 72318736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000431.1 MGP_C3HHeJ_G0000378.1 mouse_genomes_project 1 42200976 42202268 + TEC TEC MGP_C3HHeJ_T0002891.1 MGP_C3HHeJ_G0002718.1 mouse_genomes_project 1 176543055 176544055 + Gm37950 antisense antisense MGP_C3HHeJ_T0022181.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141549966 141567168 - MGP_C3HHeJ_P0022181 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022182.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141549966 141572787 - MGP_C3HHeJ_P0022182 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022183.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141549966 141574069 - MGP_C3HHeJ_P0022183 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022184.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141553915 141572875 - MGP_C3HHeJ_P0022184 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022185.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141555705 141567140 - MGP_C3HHeJ_P0022185 Lhx9 protein_coding protein_coding MGP_C3HHeJ_T0022186.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141556475 141558410 - Lhx9 protein_coding retained_intron MGP_C3HHeJ_T0022187.1 MGP_C3HHeJ_G0016317.1 mouse_genomes_project 1 141557611 141567165 - MGP_C3HHeJ_P0022187 Lhx9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000449.1 MGP_C3HHeJ_G0000396.1 mouse_genomes_project 1 58488646 58492487 + TEC TEC MGP_C3HHeJ_T0002837.1 MGP_C3HHeJ_G0002676.1 mouse_genomes_project 1 141240699 141275901 + Gm28501 antisense antisense MGP_C3HHeJ_T0011982.1 MGP_C3HHeJ_G0010086.1 mouse_genomes_project 1 63594438 63594942 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005805.1 MGP_C3HHeJ_G0004860.1 mouse_genomes_project 1 122488080 122490731 + 1700012E03Rik lincRNA lincRNA MGP_C3HHeJ_T0012086.1 MGP_C3HHeJ_G0010190.1 mouse_genomes_project 1 110569931 110571802 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009448.1 MGP_C3HHeJ_G0007581.1 mouse_genomes_project 1 140676467 140676554 + Mir181a-1 miRNA miRNA MGP_C3HHeJ_T0011832.1 MGP_C3HHeJ_G0009936.1 mouse_genomes_project 1 21074172 21075160 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099912.1 MGP_C3HHeJ_G0038106.1 mouse_genomes_project 1 175222014 175222105 + Gm25151 snoRNA snoRNA MGP_C3HHeJ_T0019527.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51867968 51889193 + MGP_C3HHeJ_P0019527 protein_coding protein_coding MGP_C3HHeJ_T0019528.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868002 51889193 + MGP_C3HHeJ_P0019528 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019529.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868012 51887910 + MGP_C3HHeJ_P0019529 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019530.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868017 51888003 + protein_coding retained_intron MGP_C3HHeJ_T0019531.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51868062 51887976 + MGP_C3HHeJ_P0019531 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019532.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51878781 51889193 + protein_coding retained_intron MGP_C3HHeJ_T0019533.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51879249 51887930 + protein_coding processed_transcript MGP_C3HHeJ_T0019534.1 MGP_C3HHeJ_G0015780.1 mouse_genomes_project 1 51882446 51887301 + protein_coding retained_intron MGP_C3HHeJ_T0005863.1 MGP_C3HHeJ_G0004907.1 mouse_genomes_project 1 154149883 154153425 + Gm29188 lincRNA lincRNA MGP_C3HHeJ_T0000697.1 MGP_C3HHeJ_G0000642.1 mouse_genomes_project 1 168071780 168074062 + TEC TEC MGP_C3HHeJ_T0011841.1 MGP_C3HHeJ_G0009945.1 mouse_genomes_project 1 25734968 25735622 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005607.1 MGP_C3HHeJ_G0004712.1 mouse_genomes_project 1 34253419 34261471 - Gm33222 lincRNA lincRNA MGP_C3HHeJ_T0005608.1 MGP_C3HHeJ_G0004712.1 mouse_genomes_project 1 34253502 34261417 - Gm33222 lincRNA lincRNA MGP_C3HHeJ_T0000494.1 MGP_C3HHeJ_G0000441.1 mouse_genomes_project 1 78858959 78860438 - TEC TEC MGP_C3HHeJ_T0020875.1 MGP_C3HHeJ_G0016031.1 mouse_genomes_project 1 88281620 88286833 + MGP_C3HHeJ_P0020875 3110079O15Rik protein_coding protein_coding MGP_C3HHeJ_T0020876.1 MGP_C3HHeJ_G0016031.1 mouse_genomes_project 1 88283888 88286809 + 3110079O15Rik protein_coding processed_transcript MGP_C3HHeJ_T0022756.1 MGP_C3HHeJ_G0016419.1 mouse_genomes_project 1 165076021 165086654 + MGP_C3HHeJ_P0022756 Tnfsf18 protein_coding protein_coding MGP_C3HHeJ_T0099839.1 MGP_C3HHeJ_G0038033.1 mouse_genomes_project 1 37989280 37989390 - Snord89 snoRNA snoRNA MGP_C3HHeJ_T0098669.1 MGP_C3HHeJ_G0036863.1 mouse_genomes_project 1 174903164 174903328 + Gm26110 snRNA snRNA MGP_C3HHeJ_T0019421.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261704 43503475 + MGP_C3HHeJ_P0019421 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019422.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261886 43495239 + MGP_C3HHeJ_P0019422 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019423.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261886 43503463 + MGP_C3HHeJ_P0019423 Gulp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019424.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43261920 43494832 + Gulp1 protein_coding processed_transcript MGP_C3HHeJ_T0019425.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43262786 43413798 + MGP_C3HHeJ_P0019425 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019426.1 MGP_C3HHeJ_G0015762.1 mouse_genomes_project 1 43400556 43503462 + MGP_C3HHeJ_P0019426 Gulp1 protein_coding protein_coding MGP_C3HHeJ_T0019154.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640143 35689014 + Inpp4a protein_coding processed_transcript MGP_C3HHeJ_T0019155.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640169 35750780 + MGP_C3HHeJ_P0019155 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019156.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640171 35643045 + Inpp4a protein_coding retained_intron MGP_C3HHeJ_T0019157.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640193 35739651 + MGP_C3HHeJ_P0019157 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019158.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640586 35748376 + MGP_C3HHeJ_P0019158 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019159.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35640586 35748820 + MGP_C3HHeJ_P0019159 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019160.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35697900 35743775 + MGP_C3HHeJ_P0019160 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019161.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35697900 35748556 + MGP_C3HHeJ_P0019161 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019162.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35698422 35748346 + MGP_C3HHeJ_P0019162 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019163.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35709703 35744519 + MGP_C3HHeJ_P0019163 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019164.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35709703 35744527 + MGP_C3HHeJ_P0019164 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019165.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35709707 35744524 + MGP_C3HHeJ_P0019165 Inpp4a protein_coding protein_coding MGP_C3HHeJ_T0019166.1 MGP_C3HHeJ_G0015707.1 mouse_genomes_project 1 35717986 35720390 + Inpp4a protein_coding retained_intron MGP_C3HHeJ_T0018501.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1846522 1858828 - MGP_C3HHeJ_P0018501 Mrpl15 protein_coding protein_coding MGP_C3HHeJ_T0018502.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1847248 1858795 - MGP_C3HHeJ_P0018502 Mrpl15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018503.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1847701 1858816 - MGP_C3HHeJ_P0018503 Mrpl15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018504.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1849653 1858857 - Mrpl15 protein_coding processed_transcript MGP_C3HHeJ_T0018505.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1853160 1857687 - Mrpl15 protein_coding retained_intron MGP_C3HHeJ_T0018506.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1854414 1858857 - MGP_C3HHeJ_P0018506 Mrpl15 protein_coding protein_coding MGP_C3HHeJ_T0018507.1 MGP_C3HHeJ_G0015582.1 mouse_genomes_project 1 1856678 1858810 - Mrpl15 protein_coding retained_intron MGP_C3HHeJ_T0018850.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18934374 19540246 - MGP_C3HHeJ_P0018850 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018851.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18934379 19540607 - MGP_C3HHeJ_P0018851 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018852.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18938153 19540246 - MGP_C3HHeJ_P0018852 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018853.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18938153 19540246 - MGP_C3HHeJ_P0018853 Kcnq5 protein_coding protein_coding MGP_C3HHeJ_T0018854.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 18938153 19540246 - MGP_C3HHeJ_P0018854 Kcnq5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018855.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 19010474 19540330 - Kcnq5 protein_coding retained_intron MGP_C3HHeJ_T0018856.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 19052616 19151005 - MGP_C3HHeJ_P0018856 Kcnq5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018857.1 MGP_C3HHeJ_G0015652.1 mouse_genomes_project 1 19131450 19431574 - Kcnq5 protein_coding processed_transcript MGP_C3HHeJ_T0011873.1 MGP_C3HHeJ_G0009977.1 mouse_genomes_project 1 32831335 32831570 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012051.1 MGP_C3HHeJ_G0010155.1 mouse_genomes_project 1 95415990 95416832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011963.1 MGP_C3HHeJ_G0010067.1 mouse_genomes_project 1 60357924 60358341 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011977.1 MGP_C3HHeJ_G0010081.1 mouse_genomes_project 1 62501930 62502813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012081.1 MGP_C3HHeJ_G0010185.1 mouse_genomes_project 1 108579630 108580649 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018511.1 MGP_C3HHeJ_G0015584.1 mouse_genomes_project 1 1881430 1964836 + MGP_C3HHeJ_P0018511 Gm37988 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000328.1 MGP_C3HHeJ_G0000278.1 mouse_genomes_project 1 1425346 1426830 - TEC TEC MGP_C3HHeJ_T0023831.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500886 190531742 + MGP_C3HHeJ_P0023831 protein_coding protein_coding MGP_C3HHeJ_T0023832.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500910 190516925 + MGP_C3HHeJ_P0023832 protein_coding protein_coding MGP_C3HHeJ_T0023833.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500917 190529604 + MGP_C3HHeJ_P0023833 protein_coding protein_coding MGP_C3HHeJ_T0023834.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190500944 190518334 + protein_coding processed_transcript MGP_C3HHeJ_T0023835.1 MGP_C3HHeJ_G0016676.1 mouse_genomes_project 1 190508132 190529449 + MGP_C3HHeJ_P0023835 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022634.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161784972 162114699 + MGP_C3HHeJ_P0022634 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022635.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161785003 162114701 + MGP_C3HHeJ_P0022635 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022636.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161785038 162035745 + MGP_C3HHeJ_P0022636 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022637.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161786235 162034337 + MGP_C3HHeJ_P0022637 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022638.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161786248 162102462 + MGP_C3HHeJ_P0022638 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022639.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161936822 161947949 + Astn1 protein_coding processed_transcript MGP_C3HHeJ_T0022640.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 161981390 162021474 + MGP_C3HHeJ_P0022640 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022641.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162021224 162033506 + Astn1 protein_coding retained_intron MGP_C3HHeJ_T0022642.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162078464 162090542 + MGP_C3HHeJ_P0022642 Astn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022643.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162078612 162107191 + MGP_C3HHeJ_P0022643 Astn1 protein_coding protein_coding MGP_C3HHeJ_T0022644.1 MGP_C3HHeJ_G0016401.1 mouse_genomes_project 1 162101769 162111452 + Astn1 protein_coding processed_transcript MGP_C3HHeJ_T0019759.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58142008 58207299 - MGP_C3HHeJ_P0019759 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019760.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58146223 58207242 - MGP_C3HHeJ_P0019760 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019761.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58146962 58185927 - MGP_C3HHeJ_P0019761 Fam126b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019762.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58148302 58207167 - MGP_C3HHeJ_P0019762 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019763.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58171645 58207251 - MGP_C3HHeJ_P0019763 Fam126b protein_coding protein_coding MGP_C3HHeJ_T0019764.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58176791 58207240 - Fam126b protein_coding processed_transcript MGP_C3HHeJ_T0019765.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58176818 58207253 - Fam126b protein_coding retained_intron MGP_C3HHeJ_T0019766.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58182403 58185193 - Fam126b protein_coding retained_intron MGP_C3HHeJ_T0019767.1 MGP_C3HHeJ_G0015824.1 mouse_genomes_project 1 58185576 58207273 - Fam126b protein_coding retained_intron MGP_C3HHeJ_T0012148.1 MGP_C3HHeJ_G0010252.1 mouse_genomes_project 1 139452771 139453502 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019014.1 MGP_C3HHeJ_G0015682.1 mouse_genomes_project 1 32687956 32694660 + MGP_C3HHeJ_P0019014 protein_coding protein_coding MGP_C3HHeJ_T0019015.1 MGP_C3HHeJ_G0015682.1 mouse_genomes_project 1 32687967 32691723 + MGP_C3HHeJ_P0019015 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005989.1 MGP_C3HHeJ_G0005005.1 mouse_genomes_project 1 199683739 199694309 - 4930503O07Rik lincRNA lincRNA MGP_C3HHeJ_T0000601.1 MGP_C3HHeJ_G0000548.1 mouse_genomes_project 1 135401727 135403536 - TEC TEC MGP_C3HHeJ_T0009436.1 MGP_C3HHeJ_G0007569.1 mouse_genomes_project 1 99916455 99916565 + Gm26134 miRNA miRNA MGP_C3HHeJ_T0009433.1 MGP_C3HHeJ_G0007566.1 mouse_genomes_project 1 94525474 94525602 + Mir6345 miRNA miRNA MGP_C3HHeJ_T0101080.1 MGP_C3HHeJ_G0039274.1 mouse_genomes_project 1 35056465 35056775 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101081.1 MGP_C3HHeJ_G0039274.1 mouse_genomes_project 1 35056620 35057477 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0020118.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68116191 69262061 - MGP_C3HHeJ_P0020118 Erbb4 protein_coding protein_coding MGP_C3HHeJ_T0020119.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68116191 69262364 - MGP_C3HHeJ_P0020119 Erbb4 protein_coding protein_coding MGP_C3HHeJ_T0020120.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68341357 69262061 - MGP_C3HHeJ_P0020120 Erbb4 protein_coding protein_coding MGP_C3HHeJ_T0020121.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68375225 68383454 - Erbb4 protein_coding processed_transcript MGP_C3HHeJ_T0020122.1 MGP_C3HHeJ_G0015889.1 mouse_genomes_project 1 68383285 68416455 - Erbb4 protein_coding retained_intron MGP_C3HHeJ_T0000653.1 MGP_C3HHeJ_G0000598.1 mouse_genomes_project 1 156146798 156147236 + TEC TEC MGP_C3HHeJ_T0012270.1 MGP_C3HHeJ_G0010374.1 mouse_genomes_project 1 197416800 197417032 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005580.1 MGP_C3HHeJ_G0004687.1 mouse_genomes_project 1 14527685 14532974 + Gm28783 lincRNA lincRNA MGP_C3HHeJ_T0021926.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136402750 136406879 - Optc protein_coding retained_intron MGP_C3HHeJ_T0021927.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136402750 136413774 - MGP_C3HHeJ_P0021927 Optc protein_coding protein_coding MGP_C3HHeJ_T0021928.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136402751 136414601 - MGP_C3HHeJ_P0021928 Optc protein_coding protein_coding MGP_C3HHeJ_T0021929.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136403250 136413728 - MGP_C3HHeJ_P0021929 Optc protein_coding protein_coding MGP_C3HHeJ_T0021930.1 MGP_C3HHeJ_G0016263.1 mouse_genomes_project 1 136406385 136413604 - MGP_C3HHeJ_P0021930 Optc protein_coding protein_coding MGP_C3HHeJ_T0021578.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129428016 129613423 + Mgat5 protein_coding retained_intron MGP_C3HHeJ_T0021579.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129428019 129717331 + MGP_C3HHeJ_P0021579 Mgat5 protein_coding protein_coding MGP_C3HHeJ_T0021580.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129428029 129623032 + Mgat5 protein_coding retained_intron MGP_C3HHeJ_T0021581.1 MGP_C3HHeJ_G0016188.1 mouse_genomes_project 1 129532122 129712726 + MGP_C3HHeJ_P0021581 Mgat5 protein_coding protein_coding MGP_C3HHeJ_T0000778.1 MGP_C3HHeJ_G0000720.1 mouse_genomes_project 1 200516227 200518951 + TEC TEC MGP_C3HHeJ_T0019385.1 MGP_C3HHeJ_G0015755.1 mouse_genomes_project 1 42665274 42675873 - MGP_C3HHeJ_P0019385 Mettl21c protein_coding protein_coding MGP_C3HHeJ_T0019386.1 MGP_C3HHeJ_G0015755.1 mouse_genomes_project 1 42665801 42673335 - Mettl21c protein_coding processed_transcript MGP_C3HHeJ_T0019387.1 MGP_C3HHeJ_G0015755.1 mouse_genomes_project 1 42666376 42675901 - Mettl21c protein_coding retained_intron MGP_C3HHeJ_T0022517.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159128171 159131566 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0022518.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159130300 159165160 - MGP_C3HHeJ_P0022518 Qsox1 protein_coding protein_coding MGP_C3HHeJ_T0022519.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159130301 159165122 - MGP_C3HHeJ_P0022519 Qsox1 protein_coding protein_coding MGP_C3HHeJ_T0022520.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159130304 159165115 - MGP_C3HHeJ_P0022520 Qsox1 protein_coding protein_coding MGP_C3HHeJ_T0022521.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159132061 159134137 - Qsox1 protein_coding processed_transcript MGP_C3HHeJ_T0022522.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159146300 159165091 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0022523.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159146474 159147549 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0022524.1 MGP_C3HHeJ_G0016382.1 mouse_genomes_project 1 159153592 159165109 - Qsox1 protein_coding retained_intron MGP_C3HHeJ_T0005855.1 MGP_C3HHeJ_G0004900.1 mouse_genomes_project 1 141602300 141602978 - 1700019P21Rik lincRNA lincRNA MGP_C3HHeJ_T0000440.1 MGP_C3HHeJ_G0000387.1 mouse_genomes_project 1 53588303 53590936 - TEC TEC MGP_C3HHeJ_T0023617.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190340 185193402 - Psen2 protein_coding processed_transcript MGP_C3HHeJ_T0023618.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190340 185219693 - MGP_C3HHeJ_P0023618 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023619.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190340 185216531 - MGP_C3HHeJ_P0023619 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023620.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190342 185192905 - Psen2 protein_coding retained_intron MGP_C3HHeJ_T0023621.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190342 185209347 - MGP_C3HHeJ_P0023621 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023622.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190725 185193399 - Psen2 protein_coding processed_transcript MGP_C3HHeJ_T0023623.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190779 185211547 - MGP_C3HHeJ_P0023623 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023624.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190782 185209154 - MGP_C3HHeJ_P0023624 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0023625.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185190804 185193362 - Psen2 protein_coding processed_transcript MGP_C3HHeJ_T0023626.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185195860 185219637 - Psen2 protein_coding retained_intron MGP_C3HHeJ_T0023627.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185198510 185202473 - Psen2 protein_coding retained_intron MGP_C3HHeJ_T0023628.1 MGP_C3HHeJ_G0016629.1 mouse_genomes_project 1 185209034 185226831 - MGP_C3HHeJ_P0023628 Psen2 protein_coding protein_coding MGP_C3HHeJ_T0021918.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136194254 136301652 - MGP_C3HHeJ_P0021918 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021919.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136196515 136196720 - MGP_C3HHeJ_P0021919 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021920.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136197659 136253748 - MGP_C3HHeJ_P0021920 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021921.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136197659 136253748 - MGP_C3HHeJ_P0021921 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021922.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136201310 136253682 - MGP_C3HHeJ_P0021922 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021923.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136208911 136253282 - MGP_C3HHeJ_P0021923 Atp2b4 protein_coding protein_coding MGP_C3HHeJ_T0021924.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136211253 136212860 - Atp2b4 protein_coding retained_intron MGP_C3HHeJ_T0021925.1 MGP_C3HHeJ_G0016262.1 mouse_genomes_project 1 136253700 136301647 - Atp2b4 protein_coding processed_transcript MGP_C3HHeJ_T0000573.1 MGP_C3HHeJ_G0000520.1 mouse_genomes_project 1 126001369 126004231 - TEC TEC MGP_C3HHeJ_T0020361.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75415158 75423240 - MGP_C3HHeJ_P0020361 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020362.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75416373 75422291 - MGP_C3HHeJ_P0020362 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020363.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75416376 75419475 - Cnppd1 protein_coding retained_intron MGP_C3HHeJ_T0020364.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75416376 75423299 - MGP_C3HHeJ_P0020364 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020365.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75417390 75418462 - Cnppd1 protein_coding retained_intron MGP_C3HHeJ_T0020366.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75417697 75418407 - Cnppd1 protein_coding retained_intron MGP_C3HHeJ_T0020367.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75419945 75422403 - MGP_C3HHeJ_P0020367 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0020368.1 MGP_C3HHeJ_G0015940.1 mouse_genomes_project 1 75420195 75423313 - MGP_C3HHeJ_P0020368 Cnppd1 protein_coding protein_coding MGP_C3HHeJ_T0022515.1 MGP_C3HHeJ_G0016381.1 mouse_genomes_project 1 159048579 159094966 - MGP_C3HHeJ_P0022515 Lhx4 protein_coding protein_coding MGP_C3HHeJ_T0022516.1 MGP_C3HHeJ_G0016381.1 mouse_genomes_project 1 159056242 159104703 - MGP_C3HHeJ_P0022516 Lhx4 protein_coding protein_coding MGP_C3HHeJ_T0023473.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477766 180509202 + MGP_C3HHeJ_P0023473 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023474.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477979 180484859 + MGP_C3HHeJ_P0023474 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023475.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477981 180487866 + MGP_C3HHeJ_P0023475 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023476.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180477998 180487888 + MGP_C3HHeJ_P0023476 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023477.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180478364 180487884 + MGP_C3HHeJ_P0023477 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023478.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180488685 180496714 + MGP_C3HHeJ_P0023478 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023479.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180497164 180504434 + MGP_C3HHeJ_P0023479 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023480.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180499945 180504251 + Exo1 protein_coding retained_intron MGP_C3HHeJ_T0023481.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180500083 180501911 + MGP_C3HHeJ_P0023481 Exo1 protein_coding protein_coding MGP_C3HHeJ_T0023482.1 MGP_C3HHeJ_G0016603.1 mouse_genomes_project 1 180503282 180504446 + Exo1 protein_coding processed_transcript MGP_C3HHeJ_T0009394.1 MGP_C3HHeJ_G0007527.1 mouse_genomes_project 1 34948671 34948746 + Gm24133 miRNA miRNA MGP_C3HHeJ_T0005935.1 MGP_C3HHeJ_G0004965.1 mouse_genomes_project 1 186719026 186742419 + lincRNA lincRNA MGP_C3HHeJ_T0005936.1 MGP_C3HHeJ_G0004965.1 mouse_genomes_project 1 186719052 186731781 + lincRNA lincRNA MGP_C3HHeJ_T0005947.1 MGP_C3HHeJ_G0004973.1 mouse_genomes_project 1 188634521 188635055 + Gm33973 lincRNA lincRNA MGP_C3HHeJ_T0021896.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136088222 136095416 - MGP_C3HHeJ_P0021896 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0021897.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136088240 136095246 - MGP_C3HHeJ_P0021897 Snrpe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021898.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136090431 136095448 - MGP_C3HHeJ_P0021898 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0021899.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136090867 136095124 - MGP_C3HHeJ_P0021899 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0021900.1 MGP_C3HHeJ_G0016257.1 mouse_genomes_project 1 136093205 136095414 - MGP_C3HHeJ_P0021900 Snrpe protein_coding protein_coding MGP_C3HHeJ_T0022873.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167749701 167788160 + MGP_C3HHeJ_P0022873 Selp protein_coding protein_coding MGP_C3HHeJ_T0022874.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167776334 167777809 + Selp protein_coding retained_intron MGP_C3HHeJ_T0022875.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167776893 167787275 + MGP_C3HHeJ_P0022875 Selp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022876.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167779718 167788145 + Selp protein_coding retained_intron MGP_C3HHeJ_T0022877.1 MGP_C3HHeJ_G0016445.1 mouse_genomes_project 1 167783714 167787288 + Selp protein_coding retained_intron MGP_C3HHeJ_T0005898.1 MGP_C3HHeJ_G0004934.1 mouse_genomes_project 1 168294314 168317559 - lincRNA lincRNA MGP_C3HHeJ_T0005933.1 MGP_C3HHeJ_G0004964.1 mouse_genomes_project 1 186270841 186273354 + A430110L20Rik lincRNA lincRNA MGP_C3HHeJ_T0005934.1 MGP_C3HHeJ_G0004964.1 mouse_genomes_project 1 186270931 186273346 + A430110L20Rik lincRNA lincRNA MGP_C3HHeJ_T0023248.1 MGP_C3HHeJ_G0016528.1 mouse_genomes_project 1 175444391 175445663 + MGP_C3HHeJ_P0023248 Alyref2 protein_coding protein_coding MGP_C3HHeJ_T0101589.1 MGP_C3HHeJ_G0039555.1 mouse_genomes_project 1 164737664 164806470 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021137.1 MGP_C3HHeJ_G0016093.1 mouse_genomes_project 1 94020794 94062186 - MGP_C3HHeJ_P0021137 Ankmy1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021138.1 MGP_C3HHeJ_G0016093.1 mouse_genomes_project 1 94030120 94062509 - MGP_C3HHeJ_P0021138 Ankmy1 protein_coding protein_coding MGP_C3HHeJ_T0021139.1 MGP_C3HHeJ_G0016093.1 mouse_genomes_project 1 94030120 94062509 - MGP_C3HHeJ_P0021139 Ankmy1 protein_coding protein_coding MGP_C3HHeJ_T0011781.1 MGP_C3HHeJ_G0009885.1 mouse_genomes_project 1 5948885 5949225 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000333.1 MGP_C3HHeJ_G0000283.1 mouse_genomes_project 1 2920428 2922197 - TEC TEC MGP_C3HHeJ_T0020271.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74755830 74829941 - MGP_C3HHeJ_P0020271 Usp37 protein_coding protein_coding MGP_C3HHeJ_T0020272.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74758076 74870949 - MGP_C3HHeJ_P0020272 Usp37 protein_coding protein_coding MGP_C3HHeJ_T0020273.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74759459 74791959 - Usp37 protein_coding processed_transcript MGP_C3HHeJ_T0020274.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74769773 74829923 - Usp37 protein_coding retained_intron MGP_C3HHeJ_T0020275.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74820048 74829944 - MGP_C3HHeJ_P0020275 Usp37 protein_coding protein_coding MGP_C3HHeJ_T0020276.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74824202 74829929 - Usp37 protein_coding retained_intron MGP_C3HHeJ_T0020277.1 MGP_C3HHeJ_G0015921.1 mouse_genomes_project 1 74824286 74830421 - Usp37 protein_coding processed_transcript MGP_C3HHeJ_T0005873.1 MGP_C3HHeJ_G0004915.1 mouse_genomes_project 1 157556162 157570049 - 4930452N14Rik lincRNA lincRNA MGP_C3HHeJ_T0002937.1 MGP_C3HHeJ_G0002753.1 mouse_genomes_project 1 198265975 198267299 + Gm15867 antisense antisense MGP_C3HHeJ_T0000688.1 MGP_C3HHeJ_G0000633.1 mouse_genomes_project 1 164462535 164463428 + TEC TEC MGP_C3HHeJ_T0019449.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44638554 44656146 - MGP_C3HHeJ_P0019449 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019450.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44645735 44656173 - Slc40a1 protein_coding retained_intron MGP_C3HHeJ_T0019451.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44649477 44653873 - Slc40a1 protein_coding processed_transcript MGP_C3HHeJ_T0019452.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44649485 44655826 - Slc40a1 protein_coding processed_transcript MGP_C3HHeJ_T0019453.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44651776 44657083 - MGP_C3HHeJ_P0019453 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019454.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44651776 44657083 - MGP_C3HHeJ_P0019454 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019455.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44651776 44657083 - MGP_C3HHeJ_P0019455 Slc40a1 protein_coding protein_coding MGP_C3HHeJ_T0019456.1 MGP_C3HHeJ_G0015767.1 mouse_genomes_project 1 44654295 44657087 - Slc40a1 protein_coding retained_intron MGP_C3HHeJ_T0023213.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175251624 175259027 - Nit1 protein_coding retained_intron MGP_C3HHeJ_T0023214.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175251624 175259174 - MGP_C3HHeJ_P0023214 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023215.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175254183 175259192 - MGP_C3HHeJ_P0023215 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023216.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175254941 175259186 - Nit1 protein_coding retained_intron MGP_C3HHeJ_T0023217.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175255852 175259191 - MGP_C3HHeJ_P0023217 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023218.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175257385 175259171 - MGP_C3HHeJ_P0023218 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0023219.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175257440 175258010 - Nit1 protein_coding retained_intron MGP_C3HHeJ_T0023220.1 MGP_C3HHeJ_G0016520.1 mouse_genomes_project 1 175257763 175259191 - MGP_C3HHeJ_P0023220 Nit1 protein_coding protein_coding MGP_C3HHeJ_T0011933.1 MGP_C3HHeJ_G0010037.1 mouse_genomes_project 1 51534397 51535796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005742.1 MGP_C3HHeJ_G0004806.1 mouse_genomes_project 1 86661199 86675789 - Gm28100 lincRNA lincRNA MGP_C3HHeJ_T0012242.1 MGP_C3HHeJ_G0010346.1 mouse_genomes_project 1 183648638 183649112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020594.1 MGP_C3HHeJ_G0015972.1 mouse_genomes_project 1 79869003 79874456 - MGP_C3HHeJ_P0020594 Scg2 protein_coding protein_coding MGP_C3HHeJ_T0020595.1 MGP_C3HHeJ_G0015972.1 mouse_genomes_project 1 79869003 79874378 - MGP_C3HHeJ_P0020595 Scg2 protein_coding protein_coding MGP_C3HHeJ_T0022621.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160802353 160878372 + MGP_C3HHeJ_P0022621 BC026585 protein_coding protein_coding MGP_C3HHeJ_T0022622.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160840730 160878489 + MGP_C3HHeJ_P0022622 BC026585 protein_coding protein_coding MGP_C3HHeJ_T0022623.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160846421 160856320 + MGP_C3HHeJ_P0022623 BC026585 protein_coding protein_coding MGP_C3HHeJ_T0022624.1 MGP_C3HHeJ_G0016398.1 mouse_genomes_project 1 160857901 160882305 + MGP_C3HHeJ_P0022624 BC026585 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002901.1 MGP_C3HHeJ_G0002727.1 mouse_genomes_project 1 185733265 185747403 - Gm37768 antisense antisense MGP_C3HHeJ_T0022509.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158906277 158920446 + MGP_C3HHeJ_P0022509 Acbd6 protein_coding protein_coding MGP_C3HHeJ_T0022510.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158906279 159041166 + MGP_C3HHeJ_P0022510 Acbd6 protein_coding protein_coding MGP_C3HHeJ_T0022511.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158906283 158935948 + MGP_C3HHeJ_P0022511 Acbd6 protein_coding protein_coding MGP_C3HHeJ_T0022512.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158911274 159036935 + Acbd6 protein_coding processed_transcript MGP_C3HHeJ_T0022513.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 158915405 158920417 + Acbd6 protein_coding retained_intron MGP_C3HHeJ_T0022514.1 MGP_C3HHeJ_G0016380.1 mouse_genomes_project 1 159036830 159038207 + MGP_C3HHeJ_P0022514 Acbd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098615.1 MGP_C3HHeJ_G0036809.1 mouse_genomes_project 1 53323358 53323472 - Gm24251 snRNA snRNA MGP_C3HHeJ_T0002884.1 MGP_C3HHeJ_G0002712.1 mouse_genomes_project 1 174842275 174846681 + Gm38204 antisense antisense MGP_C3HHeJ_T0005809.1 MGP_C3HHeJ_G0004863.1 mouse_genomes_project 1 122880596 122901705 + Gm29345 lincRNA lincRNA MGP_C3HHeJ_T0012162.1 MGP_C3HHeJ_G0010266.1 mouse_genomes_project 1 145656254 145657451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101098.1 MGP_C3HHeJ_G0039282.1 mouse_genomes_project 1 185293681 185297142 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101099.1 MGP_C3HHeJ_G0039282.1 mouse_genomes_project 1 185293885 185294935 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0018689.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9893800 10073728 + MGP_C3HHeJ_P0018689 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018690.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9893846 10072907 + MGP_C3HHeJ_P0018690 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018691.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9894055 10064282 + MGP_C3HHeJ_P0018691 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018692.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9924811 10033184 + Sulf1 protein_coding retained_intron MGP_C3HHeJ_T0018693.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9924881 10072913 + MGP_C3HHeJ_P0018693 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018694.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9925816 9994612 + MGP_C3HHeJ_P0018694 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018695.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9934469 9994702 + MGP_C3HHeJ_P0018695 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0018696.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 9993505 9996881 + Sulf1 protein_coding retained_intron MGP_C3HHeJ_T0018697.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 10046211 10050690 + Sulf1 protein_coding retained_intron MGP_C3HHeJ_T0018698.1 MGP_C3HHeJ_G0015610.1 mouse_genomes_project 1 10054694 10073728 + MGP_C3HHeJ_P0018698 Sulf1 protein_coding protein_coding MGP_C3HHeJ_T0020344.1 MGP_C3HHeJ_G0015932.1 mouse_genomes_project 1 75128406 75142191 + MGP_C3HHeJ_P0020344 Wnt10a protein_coding protein_coding MGP_C3HHeJ_T0002835.1 MGP_C3HHeJ_G0002674.1 mouse_genomes_project 1 138824656 138833646 + Gm26568 antisense antisense MGP_C3HHeJ_T0101541.1 MGP_C3HHeJ_G0039507.1 mouse_genomes_project 1 15641451 15664026 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011785.1 MGP_C3HHeJ_G0009889.1 mouse_genomes_project 1 6557448 6558084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021093.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93022815 93238689 - MGP_C3HHeJ_P0021093 Hdac4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0021094.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93022815 93271755 - MGP_C3HHeJ_P0021094 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021095.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93026794 93238805 - MGP_C3HHeJ_P0021095 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021096.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93026995 93100879 - Hdac4 protein_coding processed_transcript MGP_C3HHeJ_T0021097.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93027240 93028896 - Hdac4 protein_coding retained_intron MGP_C3HHeJ_T0021098.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93049403 93069533 - MGP_C3HHeJ_P0021098 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021099.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93083069 93086645 - Hdac4 protein_coding retained_intron MGP_C3HHeJ_T0021100.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93097693 93100884 - Hdac4 protein_coding retained_intron MGP_C3HHeJ_T0021101.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93123206 93271711 - MGP_C3HHeJ_P0021101 Hdac4 protein_coding protein_coding MGP_C3HHeJ_T0021102.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93123217 93204294 - Hdac4 protein_coding processed_transcript MGP_C3HHeJ_T0021103.1 MGP_C3HHeJ_G0016080.1 mouse_genomes_project 1 93123301 93204294 - Hdac4 protein_coding processed_transcript MGP_C3HHeJ_T0012138.1 MGP_C3HHeJ_G0010242.1 mouse_genomes_project 1 132505412 132505821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023762.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188185625 188324671 - MGP_C3HHeJ_P0023762 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0023763.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188185625 188248640 - MGP_C3HHeJ_P0023763 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0023764.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188185625 188324666 - MGP_C3HHeJ_P0023764 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0023765.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188195531 188248710 - Disp1 protein_coding retained_intron MGP_C3HHeJ_T0023766.1 MGP_C3HHeJ_G0016661.1 mouse_genomes_project 1 188233041 188324703 - MGP_C3HHeJ_P0023766 Disp1 protein_coding protein_coding MGP_C3HHeJ_T0098639.1 MGP_C3HHeJ_G0036833.1 mouse_genomes_project 1 107609404 107609511 + Gm26214 snRNA snRNA MGP_C3HHeJ_T0005756.1 MGP_C3HHeJ_G0004819.1 mouse_genomes_project 1 91278395 91283240 - Gm28721 lincRNA lincRNA MGP_C3HHeJ_T0005843.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139313920 139335555 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005844.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139319624 139327680 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005845.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139328348 139338213 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005846.1 MGP_C3HHeJ_G0004893.1 mouse_genomes_project 1 139328581 139338211 + Gm19705 lincRNA lincRNA MGP_C3HHeJ_T0005858.1 MGP_C3HHeJ_G0004903.1 mouse_genomes_project 1 151339016 151352763 - Gm29515 lincRNA lincRNA MGP_C3HHeJ_T0011910.1 MGP_C3HHeJ_G0010014.1 mouse_genomes_project 1 44636109 44637285 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002770.1 MGP_C3HHeJ_G0002623.1 mouse_genomes_project 1 75111388 75113848 - Gm29539 antisense antisense MGP_C3HHeJ_T0000355.1 MGP_C3HHeJ_G0000305.1 mouse_genomes_project 1 11083683 11085932 - TEC TEC MGP_C3HHeJ_T0011897.1 MGP_C3HHeJ_G0010001.1 mouse_genomes_project 1 42674336 42674516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000663.1 MGP_C3HHeJ_G0000608.1 mouse_genomes_project 1 159782908 159785501 + TEC TEC MGP_C3HHeJ_T0000554.1 MGP_C3HHeJ_G0000501.1 mouse_genomes_project 1 108287675 108289755 - TEC TEC MGP_C3HHeJ_T0012007.1 MGP_C3HHeJ_G0010111.1 mouse_genomes_project 1 73604095 73604429 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011968.1 MGP_C3HHeJ_G0010072.1 mouse_genomes_project 1 60713267 60713792 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000584.1 MGP_C3HHeJ_G0000531.1 mouse_genomes_project 1 130371647 130374143 + TEC TEC MGP_C3HHeJ_T0101608.1 MGP_C3HHeJ_G0039574.1 mouse_genomes_project 1 186096554 186105594 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098593.1 MGP_C3HHeJ_G0036787.1 mouse_genomes_project 1 839079 839137 - Gm27396 snRNA snRNA MGP_C3HHeJ_T0000460.1 MGP_C3HHeJ_G0000407.1 mouse_genomes_project 1 61376758 61377040 + TEC TEC MGP_C3HHeJ_T0011865.1 MGP_C3HHeJ_G0009969.1 mouse_genomes_project 1 31513041 31515322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011974.1 MGP_C3HHeJ_G0010078.1 mouse_genomes_project 1 61821450 61821728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022016.1 MGP_C3HHeJ_G0016284.1 mouse_genomes_project 1 137542351 137669341 - MGP_C3HHeJ_P0022016 Lgr6 protein_coding protein_coding MGP_C3HHeJ_T0022017.1 MGP_C3HHeJ_G0016284.1 mouse_genomes_project 1 137545958 137669067 - MGP_C3HHeJ_P0022017 Lgr6 protein_coding protein_coding MGP_C3HHeJ_T0022018.1 MGP_C3HHeJ_G0016284.1 mouse_genomes_project 1 137563179 137582637 - Lgr6 protein_coding processed_transcript MGP_C3HHeJ_T0005690.1 MGP_C3HHeJ_G0004769.1 mouse_genomes_project 1 64572369 64575189 + Gm29152 lincRNA lincRNA MGP_C3HHeJ_T0019088.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34781821 34799107 + MGP_C3HHeJ_P0019088 Cnnm3 protein_coding protein_coding MGP_C3HHeJ_T0019089.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34781821 34799107 + MGP_C3HHeJ_P0019089 Cnnm3 protein_coding protein_coding MGP_C3HHeJ_T0019090.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34783051 34790609 + Cnnm3 protein_coding retained_intron MGP_C3HHeJ_T0019091.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34788742 34789748 + Cnnm3 protein_coding retained_intron MGP_C3HHeJ_T0019092.1 MGP_C3HHeJ_G0015696.1 mouse_genomes_project 1 34790934 34796470 + Cnnm3 protein_coding retained_intron MGP_C3HHeJ_T0099874.1 MGP_C3HHeJ_G0038068.1 mouse_genomes_project 1 109193487 109193618 - Gm24553 snoRNA snoRNA MGP_C3HHeJ_T0022552.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159574900 159627030 - MGP_C3HHeJ_P0022552 Tdrd5 protein_coding protein_coding MGP_C3HHeJ_T0022553.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159574902 159626714 - MGP_C3HHeJ_P0022553 Tdrd5 protein_coding protein_coding MGP_C3HHeJ_T0022554.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159580263 159584031 - Tdrd5 protein_coding processed_transcript MGP_C3HHeJ_T0022555.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159587527 159594900 - Tdrd5 protein_coding retained_intron MGP_C3HHeJ_T0022556.1 MGP_C3HHeJ_G0016387.1 mouse_genomes_project 1 159614464 159626972 - MGP_C3HHeJ_P0022556 Tdrd5 protein_coding protein_coding MGP_C3HHeJ_T0021122.1 MGP_C3HHeJ_G0016088.1 mouse_genomes_project 1 93760064 93761073 + MGP_C3HHeJ_P0021122 Olfr1410 protein_coding protein_coding MGP_C3HHeJ_T0021123.1 MGP_C3HHeJ_G0016088.1 mouse_genomes_project 1 93760064 93761033 + MGP_C3HHeJ_P0021123 Olfr1410 protein_coding protein_coding MGP_C3HHeJ_T0020501.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725325 75732600 + MGP_C3HHeJ_P0020501 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020502.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725338 75732599 + MGP_C3HHeJ_P0020502 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020503.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725356 75728269 + MGP_C3HHeJ_P0020503 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020504.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725362 75729928 + MGP_C3HHeJ_P0020504 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020505.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725363 75730941 + MGP_C3HHeJ_P0020505 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020506.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725377 75731035 + MGP_C3HHeJ_P0020506 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020507.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725379 75728815 + MGP_C3HHeJ_P0020507 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020508.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725482 75730950 + MGP_C3HHeJ_P0020508 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020509.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75725508 75727724 + MGP_C3HHeJ_P0020509 Gmppa protein_coding protein_coding MGP_C3HHeJ_T0020510.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75726337 75731454 + MGP_C3HHeJ_P0020510 Gmppa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020511.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75731045 75732358 + Gmppa protein_coding retained_intron MGP_C3HHeJ_T0020512.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75731591 75732599 + Gmppa protein_coding retained_intron MGP_C3HHeJ_T0020513.1 MGP_C3HHeJ_G0015956.1 mouse_genomes_project 1 75731649 75732605 + Gmppa protein_coding retained_intron MGP_C3HHeJ_T0019375.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42589957 42605729 + Tpp2 protein_coding processed_transcript MGP_C3HHeJ_T0019376.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590317 42658830 + MGP_C3HHeJ_P0019376 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019377.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590324 42613325 + Tpp2 protein_coding retained_intron MGP_C3HHeJ_T0019378.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590325 42613325 + Tpp2 protein_coding retained_intron MGP_C3HHeJ_T0019379.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590325 42658859 + MGP_C3HHeJ_P0019379 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019380.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590343 42646899 + MGP_C3HHeJ_P0019380 Tpp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019381.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42590355 42646880 + MGP_C3HHeJ_P0019381 Tpp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019382.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42627680 42633659 + MGP_C3HHeJ_P0019382 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019383.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42639579 42658859 + MGP_C3HHeJ_P0019383 Tpp2 protein_coding protein_coding MGP_C3HHeJ_T0019384.1 MGP_C3HHeJ_G0015754.1 mouse_genomes_project 1 42656678 42658195 + Tpp2 protein_coding retained_intron MGP_C3HHeJ_T0002809.1 MGP_C3HHeJ_G0002655.1 mouse_genomes_project 1 129987049 130008975 - 2900009J06Rik antisense antisense MGP_C3HHeJ_T0002810.1 MGP_C3HHeJ_G0002655.1 mouse_genomes_project 1 129987049 130009013 - 2900009J06Rik antisense antisense MGP_C3HHeJ_T0101560.1 MGP_C3HHeJ_G0039526.1 mouse_genomes_project 1 89014145 89014539 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101546.1 MGP_C3HHeJ_G0039512.1 mouse_genomes_project 1 18901435 18902705 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011806.1 MGP_C3HHeJ_G0009910.1 mouse_genomes_project 1 14056927 14057610 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021916.1 MGP_C3HHeJ_G0016261.1 mouse_genomes_project 1 136170443 136181449 - MGP_C3HHeJ_P0021916 Lax1 protein_coding protein_coding MGP_C3HHeJ_T0021917.1 MGP_C3HHeJ_G0016261.1 mouse_genomes_project 1 136171812 136181427 - MGP_C3HHeJ_P0021917 Lax1 protein_coding protein_coding MGP_C3HHeJ_T0023904.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194935777 194984090 - MGP_C3HHeJ_P0023904 Cenpf protein_coding protein_coding MGP_C3HHeJ_T0023905.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194937865 194944026 - MGP_C3HHeJ_P0023905 Cenpf protein_coding protein_coding MGP_C3HHeJ_T0023906.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194954721 194984090 - MGP_C3HHeJ_P0023906 Cenpf protein_coding protein_coding MGP_C3HHeJ_T0023907.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194963756 194967145 - Cenpf protein_coding retained_intron MGP_C3HHeJ_T0023908.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194979828 194984039 - MGP_C3HHeJ_P0023908 Cenpf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023909.1 MGP_C3HHeJ_G0016689.1 mouse_genomes_project 1 194983063 194984090 - Cenpf protein_coding retained_intron MGP_C3HHeJ_T0099907.1 MGP_C3HHeJ_G0038101.1 mouse_genomes_project 1 164591267 164591343 + Gm25789 snoRNA snoRNA MGP_C3HHeJ_T0023629.1 MGP_C3HHeJ_G0016630.1 mouse_genomes_project 1 185297076 185395854 + MGP_C3HHeJ_P0023629 Itpkb protein_coding protein_coding MGP_C3HHeJ_T0023630.1 MGP_C3HHeJ_G0016630.1 mouse_genomes_project 1 185300457 185305050 + Itpkb protein_coding retained_intron MGP_C3HHeJ_T0011801.1 MGP_C3HHeJ_G0009905.1 mouse_genomes_project 1 10646626 10647267 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101606.1 MGP_C3HHeJ_G0039572.1 mouse_genomes_project 1 185989243 185989375 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012044.1 MGP_C3HHeJ_G0010148.1 mouse_genomes_project 1 92367285 92368177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005760.1 MGP_C3HHeJ_G0004823.1 mouse_genomes_project 1 92027571 92028373 - Gm28199 lincRNA lincRNA MGP_C3HHeJ_T0012257.1 MGP_C3HHeJ_G0010361.1 mouse_genomes_project 1 188992725 188992872 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020018.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64713839 64886159 - MGP_C3HHeJ_P0020018 Plekhm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020019.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64716977 64886159 - MGP_C3HHeJ_P0020019 Plekhm3 protein_coding protein_coding MGP_C3HHeJ_T0020020.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64721665 64764433 - Plekhm3 protein_coding processed_transcript MGP_C3HHeJ_T0020021.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64788896 64856694 - Plekhm3 protein_coding retained_intron MGP_C3HHeJ_T0020022.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64866812 64886110 - MGP_C3HHeJ_P0020022 Plekhm3 protein_coding protein_coding MGP_C3HHeJ_T0020023.1 MGP_C3HHeJ_G0015869.1 mouse_genomes_project 1 64882506 64886062 - Plekhm3 protein_coding processed_transcript MGP_C3HHeJ_T0000742.1 MGP_C3HHeJ_G0000686.1 mouse_genomes_project 1 187073380 187077249 - TEC TEC MGP_C3HHeJ_T0005921.1 MGP_C3HHeJ_G0004953.1 mouse_genomes_project 1 180172044 180176181 + Gm36307 lincRNA lincRNA MGP_C3HHeJ_T0022357.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154634957 154655262 - MGP_C3HHeJ_P0022357 Rnf2 protein_coding protein_coding MGP_C3HHeJ_T0022358.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649690 154680621 - MGP_C3HHeJ_P0022358 Rnf2 protein_coding protein_coding MGP_C3HHeJ_T0022359.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649722 154650602 - Rnf2 protein_coding retained_intron MGP_C3HHeJ_T0022360.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649884 154663019 - MGP_C3HHeJ_P0022360 Rnf2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0022361.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154649887 154653219 - Rnf2 protein_coding processed_transcript MGP_C3HHeJ_T0022362.1 MGP_C3HHeJ_G0016349.1 mouse_genomes_project 1 154656000 154680582 - MGP_C3HHeJ_P0022362 Rnf2 protein_coding protein_coding MGP_C3HHeJ_T0020851.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138705 88167783 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020852.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138710 88266383 + MGP_C3HHeJ_P0020852 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020853.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138736 88264731 + MGP_C3HHeJ_P0020853 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020854.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138737 88169845 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020855.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138740 88238613 + MGP_C3HHeJ_P0020855 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020856.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138753 88140715 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0020857.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138755 88203453 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020858.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88138773 88247142 + MGP_C3HHeJ_P0020858 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020859.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88166506 88264731 + MGP_C3HHeJ_P0020859 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020860.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88166506 88264731 + MGP_C3HHeJ_P0020860 Gigyf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020861.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88176373 88191545 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0020862.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88176733 88178228 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0020863.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88198886 88219864 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020864.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88198907 88219595 + MGP_C3HHeJ_P0020864 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020867.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88216222 88256432 + MGP_C3HHeJ_P0020867 Gigyf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020868.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88216281 88220253 + MGP_C3HHeJ_P0020868 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020869.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88217467 88220163 + MGP_C3HHeJ_P0020869 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020870.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88217499 88223254 + MGP_C3HHeJ_P0020870 Gigyf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020871.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88217515 88219918 + MGP_C3HHeJ_P0020871 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020872.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88219930 88232893 + MGP_C3HHeJ_P0020872 Gigyf2 protein_coding protein_coding MGP_C3HHeJ_T0020873.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88246462 88266383 + Gigyf2 protein_coding processed_transcript MGP_C3HHeJ_T0020874.1 MGP_C3HHeJ_G0016029.1 mouse_genomes_project 1 88257728 88264794 + Gigyf2 protein_coding retained_intron MGP_C3HHeJ_T0019274.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 37991830 38017830 - MGP_C3HHeJ_P0019274 Rnf149 protein_coding protein_coding MGP_C3HHeJ_T0019275.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 37993006 38017781 - MGP_C3HHeJ_P0019275 Rnf149 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019276.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 37996140 37999295 - Rnf149 protein_coding retained_intron MGP_C3HHeJ_T0019277.1 MGP_C3HHeJ_G0015730.1 mouse_genomes_project 1 38005634 38017728 - MGP_C3HHeJ_P0019277 Rnf149 protein_coding protein_coding MGP_C3HHeJ_T0005940.1 MGP_C3HHeJ_G0004967.1 mouse_genomes_project 1 186933739 186935355 - Gm5533 lincRNA lincRNA MGP_C3HHeJ_T0020953.1 MGP_C3HHeJ_G0016049.1 mouse_genomes_project 1 89197825 89206578 + MGP_C3HHeJ_P0020953 protein_coding protein_coding MGP_C3HHeJ_T0011809.1 MGP_C3HHeJ_G0009913.1 mouse_genomes_project 1 14661527 14661906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011886.1 MGP_C3HHeJ_G0009990.1 mouse_genomes_project 1 37302374 37303146 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097965.1 MGP_C3HHeJ_G0036177.1 mouse_genomes_project 1 137717213 137717314 - Gm26280 rRNA rRNA MGP_C3HHeJ_T0000588.1 MGP_C3HHeJ_G0000535.1 mouse_genomes_project 1 131666210 131667169 + TEC TEC MGP_C3HHeJ_T0000704.1 MGP_C3HHeJ_G0000649.1 mouse_genomes_project 1 169558879 169559878 - TEC TEC MGP_C3HHeJ_T0000646.1 MGP_C3HHeJ_G0000591.1 mouse_genomes_project 1 152532755 152534790 - TEC TEC MGP_C3HHeJ_T0011848.1 MGP_C3HHeJ_G0009952.1 mouse_genomes_project 1 27897810 27898432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018539.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3303828 3331932 + MGP_C3HHeJ_P0018539 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018540.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3303858 3335997 + MGP_C3HHeJ_P0018540 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018541.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3312290 3328392 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018542.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3312470 3371389 + MGP_C3HHeJ_P0018542 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018543.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3312635 3331631 + MGP_C3HHeJ_P0018543 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018544.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3325686 3346679 + MGP_C3HHeJ_P0018544 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018545.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3338595 3346008 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018546.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3346737 3371604 + MGP_C3HHeJ_P0018546 Rb1cc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018547.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3347626 3348909 + Rb1cc1 protein_coding processed_transcript MGP_C3HHeJ_T0018548.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3347744 3363581 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018549.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3358564 3360616 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018550.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3360664 3362665 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018551.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3360694 3371603 + MGP_C3HHeJ_P0018551 Rb1cc1 protein_coding protein_coding MGP_C3HHeJ_T0018552.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3363376 3370537 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0018553.1 MGP_C3HHeJ_G0015590.1 mouse_genomes_project 1 3368449 3372689 + Rb1cc1 protein_coding retained_intron MGP_C3HHeJ_T0011170.1 MGP_C3HHeJ_G0009303.1 mouse_genomes_project 1 200357139 200357433 + Gm23885 misc_RNA misc_RNA MGP_C3HHeJ_T0005990.1 MGP_C3HHeJ_G0005006.1 mouse_genomes_project 1 200491669 200497954 - Gm32250 lincRNA lincRNA MGP_C3HHeJ_T0000711.1 MGP_C3HHeJ_G0000656.1 mouse_genomes_project 1 176693189 176695923 - TEC TEC MGP_C3HHeJ_T0011939.1 MGP_C3HHeJ_G0010043.1 mouse_genomes_project 1 52621157 52621730 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018944.1 MGP_C3HHeJ_G0015672.1 mouse_genomes_project 1 30646050 30650260 - MGP_C3HHeJ_P0018944 Gm5415 protein_coding protein_coding MGP_C3HHeJ_T0005615.1 MGP_C3HHeJ_G0004719.1 mouse_genomes_project 1 38289591 38296102 - 1700066B17Rik lincRNA lincRNA MGP_C3HHeJ_T0005616.1 MGP_C3HHeJ_G0004719.1 mouse_genomes_project 1 38292857 38297733 - 1700066B17Rik lincRNA lincRNA MGP_C3HHeJ_T0005617.1 MGP_C3HHeJ_G0004719.1 mouse_genomes_project 1 38292862 38297737 - 1700066B17Rik lincRNA lincRNA MGP_C3HHeJ_T0012241.1 MGP_C3HHeJ_G0010345.1 mouse_genomes_project 1 182452056 182452666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002828.1 MGP_C3HHeJ_G0002667.1 mouse_genomes_project 1 136413132 136421209 + Gm15851 antisense antisense MGP_C3HHeJ_T0021537.1 MGP_C3HHeJ_G0016180.1 mouse_genomes_project 1 123569527 123590771 - MGP_C3HHeJ_P0021537 Htr5b protein_coding protein_coding MGP_C3HHeJ_T0009395.1 MGP_C3HHeJ_G0007528.1 mouse_genomes_project 1 37594419 37594516 - Mir6349 miRNA miRNA MGP_C3HHeJ_T0021160.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94112314 94142091 + MGP_C3HHeJ_P0021160 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021161.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94119062 94142414 + MGP_C3HHeJ_P0021161 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021162.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94132523 94144449 + MGP_C3HHeJ_P0021162 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021163.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94132523 94145658 + MGP_C3HHeJ_P0021163 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021164.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94134748 94145269 + MGP_C3HHeJ_P0021164 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0021165.1 MGP_C3HHeJ_G0016097.1 mouse_genomes_project 1 94138321 94145796 + MGP_C3HHeJ_P0021165 Gpr35 protein_coding protein_coding MGP_C3HHeJ_T0000542.1 MGP_C3HHeJ_G0000489.1 mouse_genomes_project 1 96996284 96998389 + TEC TEC MGP_C3HHeJ_T0098627.1 MGP_C3HHeJ_G0036821.1 mouse_genomes_project 1 72454494 72454702 + Gm25360 snRNA snRNA MGP_C3HHeJ_T0000386.1 MGP_C3HHeJ_G0000334.1 mouse_genomes_project 1 23416237 23419818 - TEC TEC MGP_C3HHeJ_T0000696.1 MGP_C3HHeJ_G0000641.1 mouse_genomes_project 1 166910663 166912937 - TEC TEC MGP_C3HHeJ_T0021363.1 MGP_C3HHeJ_G0016139.1 mouse_genomes_project 1 108407267 108447685 - MGP_C3HHeJ_P0021363 Kdsr protein_coding protein_coding MGP_C3HHeJ_T0021364.1 MGP_C3HHeJ_G0016139.1 mouse_genomes_project 1 108435459 108447657 - Kdsr protein_coding retained_intron MGP_C3HHeJ_T0021365.1 MGP_C3HHeJ_G0016139.1 mouse_genomes_project 1 108445059 108447641 - Kdsr protein_coding retained_intron MGP_C3HHeJ_T0012191.1 MGP_C3HHeJ_G0010295.1 mouse_genomes_project 1 157637867 157638420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000504.1 MGP_C3HHeJ_G0000451.1 mouse_genomes_project 1 82028865 82030870 - TEC TEC MGP_C3HHeJ_T0020228.1 MGP_C3HHeJ_G0015913.1 mouse_genomes_project 1 74584937 74586012 + MGP_C3HHeJ_P0020228 Gpbar1 protein_coding protein_coding MGP_C3HHeJ_T0011763.1 MGP_C3HHeJ_G0009867.1 mouse_genomes_project 1 3478084 3478707 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020702.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85318218 85447834 - MGP_C3HHeJ_P0020702 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020703.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85318218 85413142 - MGP_C3HHeJ_P0020703 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020704.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85321293 85413142 - MGP_C3HHeJ_P0020704 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020705.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85321293 85347769 - MGP_C3HHeJ_P0020705 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020706.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85321606 85328742 - MGP_C3HHeJ_P0020706 Trip12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020707.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85323239 85325915 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020708.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85325645 85328813 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020709.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85341763 85352894 - MGP_C3HHeJ_P0020709 Trip12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020710.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85347649 85349035 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020711.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85347710 85413142 - MGP_C3HHeJ_P0020711 Trip12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020712.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85352892 85413142 - MGP_C3HHeJ_P0020712 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020713.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85355138 85358674 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020714.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85364472 85365237 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020715.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85364508 85391862 - MGP_C3HHeJ_P0020715 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020716.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85380849 85382660 - Trip12 protein_coding retained_intron MGP_C3HHeJ_T0020717.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85381263 85413142 - MGP_C3HHeJ_P0020717 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020718.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85392297 85447584 - MGP_C3HHeJ_P0020718 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0020719.1 MGP_C3HHeJ_G0015996.1 mouse_genomes_project 1 85392541 85446153 - MGP_C3HHeJ_P0020719 Trip12 protein_coding protein_coding MGP_C3HHeJ_T0005612.1 MGP_C3HHeJ_G0004716.1 mouse_genomes_project 1 35027872 35033572 - Gm33533 lincRNA lincRNA MGP_C3HHeJ_T0019388.1 MGP_C3HHeJ_G0015756.1 mouse_genomes_project 1 42718165 42724150 - MGP_C3HHeJ_P0019388 Gm8251 protein_coding protein_coding MGP_C3HHeJ_T0098653.1 MGP_C3HHeJ_G0036847.1 mouse_genomes_project 1 137932470 137932576 - Gm22796 snRNA snRNA MGP_C3HHeJ_T0011817.1 MGP_C3HHeJ_G0009921.1 mouse_genomes_project 1 16532705 16532984 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002726.1 MGP_C3HHeJ_G0002593.1 mouse_genomes_project 1 38538560 38548751 - Gm16894 antisense antisense MGP_C3HHeJ_T0002832.1 MGP_C3HHeJ_G0002671.1 mouse_genomes_project 1 137824151 137841936 + Gm26642 antisense antisense MGP_C3HHeJ_T0005836.1 MGP_C3HHeJ_G0004886.1 mouse_genomes_project 1 138197515 138282830 - Gm38399 lincRNA lincRNA MGP_C3HHeJ_T0000760.1 MGP_C3HHeJ_G0000703.1 mouse_genomes_project 1 194334100 194335639 + TEC TEC MGP_C3HHeJ_T0023467.1 MGP_C3HHeJ_G0016601.1 mouse_genomes_project 1 180281480 180287588 - MGP_C3HHeJ_P0023467 Chml protein_coding protein_coding MGP_C3HHeJ_T0020888.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440250 88547195 + MGP_C3HHeJ_P0020888 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020889.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440294 88455318 + Inpp5d protein_coding retained_intron MGP_C3HHeJ_T0020890.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440300 88547191 + MGP_C3HHeJ_P0020890 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020891.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440327 88465644 + Inpp5d protein_coding processed_transcript MGP_C3HHeJ_T0020892.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440336 88547191 + MGP_C3HHeJ_P0020892 Inpp5d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020893.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440427 88547198 + MGP_C3HHeJ_P0020893 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020894.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88440565 88489805 + MGP_C3HHeJ_P0020894 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020895.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88441612 88489729 + MGP_C3HHeJ_P0020895 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020896.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88502398 88547190 + MGP_C3HHeJ_P0020896 Inpp5d protein_coding protein_coding MGP_C3HHeJ_T0020897.1 MGP_C3HHeJ_G0016034.1 mouse_genomes_project 1 88536028 88538847 + Inpp5d protein_coding processed_transcript MGP_C3HHeJ_T0000348.1 MGP_C3HHeJ_G0000298.1 mouse_genomes_project 1 10416239 10419732 - TEC TEC MGP_C3HHeJ_T0023807.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189945747 189982903 - MGP_C3HHeJ_P0023807 Marc2 protein_coding protein_coding MGP_C3HHeJ_T0023808.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946357 189962884 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023809.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946361 189956680 - Marc2 protein_coding retained_intron MGP_C3HHeJ_T0023810.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946371 189962669 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023811.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946373 189951850 - Marc2 protein_coding retained_intron MGP_C3HHeJ_T0023812.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189946439 189962659 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023813.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189951642 189982830 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023814.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189954781 189983473 - MGP_C3HHeJ_P0023814 Marc2 protein_coding protein_coding MGP_C3HHeJ_T0023815.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189963186 189982593 - Marc2 protein_coding processed_transcript MGP_C3HHeJ_T0023816.1 MGP_C3HHeJ_G0016671.1 mouse_genomes_project 1 189964341 189982869 - Marc2 protein_coding retained_intron MGP_C3HHeJ_T0023249.1 MGP_C3HHeJ_G0016529.1 mouse_genomes_project 1 175629525 175790836 - MGP_C3HHeJ_P0023249 Itln1 protein_coding protein_coding MGP_C3HHeJ_T0023251.1 MGP_C3HHeJ_G0016529.1 mouse_genomes_project 1 175785537 175788234 - MGP_C3HHeJ_P0023251 Itln1 protein_coding protein_coding MGP_C3HHeJ_T0101576.1 MGP_C3HHeJ_G0039542.1 mouse_genomes_project 1 106858422 106858637 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101548.1 MGP_C3HHeJ_G0039514.1 mouse_genomes_project 1 51375070 51375958 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005950.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469023 189502257 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005951.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469023 189502225 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005952.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469023 189502254 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005953.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469027 189505951 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005954.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189469038 189505979 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0005956.1 MGP_C3HHeJ_G0004976.1 mouse_genomes_project 1 189494375 189505951 + Gm37223 lincRNA lincRNA MGP_C3HHeJ_T0097967.1 MGP_C3HHeJ_G0036179.1 mouse_genomes_project 1 141604286 141604402 - n-R5s217 rRNA rRNA MGP_C3HHeJ_T0002690.1 MGP_C3HHeJ_G0002566.1 mouse_genomes_project 1 12048334 12073707 + Gm9947 antisense antisense MGP_C3HHeJ_T0002691.1 MGP_C3HHeJ_G0002566.1 mouse_genomes_project 1 12050851 12053771 + Gm9947 antisense antisense MGP_C3HHeJ_T0101586.1 MGP_C3HHeJ_G0039552.1 mouse_genomes_project 1 142697616 142783959 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101571.1 MGP_C3HHeJ_G0039537.1 mouse_genomes_project 1 103674087 103674686 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0023101.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174795209 174806689 - MGP_C3HHeJ_P0023101 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023102.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174795508 174799482 - MGP_C3HHeJ_P0023102 Fcrla protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023103.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174795515 174806689 - MGP_C3HHeJ_P0023103 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023104.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174797997 174806661 - MGP_C3HHeJ_P0023104 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023105.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174798710 174806666 - MGP_C3HHeJ_P0023105 Fcrla protein_coding protein_coding MGP_C3HHeJ_T0023106.1 MGP_C3HHeJ_G0016501.1 mouse_genomes_project 1 174798730 174806640 - Fcrla protein_coding processed_transcript MGP_C3HHeJ_T0098645.1 MGP_C3HHeJ_G0036839.1 mouse_genomes_project 1 124622098 124622247 + Gm24547 snRNA snRNA MGP_C3HHeJ_T0021280.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96841073 96924794 - MGP_C3HHeJ_P0021280 St8sia4 protein_coding protein_coding MGP_C3HHeJ_T0021281.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96874995 96924758 - MGP_C3HHeJ_P0021281 St8sia4 protein_coding protein_coding MGP_C3HHeJ_T0021282.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96915557 96924791 - St8sia4 protein_coding retained_intron MGP_C3HHeJ_T0021283.1 MGP_C3HHeJ_G0016121.1 mouse_genomes_project 1 96921197 96924788 - St8sia4 protein_coding retained_intron MGP_C3HHeJ_T0020040.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65092211 65112758 - MGP_C3HHeJ_P0020040 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020041.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65092213 65120904 - MGP_C3HHeJ_P0020041 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020042.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65099794 65120863 - MGP_C3HHeJ_P0020042 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020043.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65099839 65120925 - MGP_C3HHeJ_P0020043 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020044.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65102184 65109134 - MGP_C3HHeJ_P0020044 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020045.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65104715 65120884 - MGP_C3HHeJ_P0020045 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0020046.1 MGP_C3HHeJ_G0015877.1 mouse_genomes_project 1 65108865 65120904 - MGP_C3HHeJ_P0020046 Idh1 protein_coding protein_coding MGP_C3HHeJ_T0023419.1 MGP_C3HHeJ_G0016579.1 mouse_genomes_project 1 178534760 178549832 - MGP_C3HHeJ_P0023419 Ifi202b protein_coding protein_coding MGP_C3HHeJ_T0022956.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499495 169585414 + MGP_C3HHeJ_P0022956 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022957.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499495 169585414 + MGP_C3HHeJ_P0022957 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022958.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499495 169585414 + MGP_C3HHeJ_P0022958 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022959.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499503 169575827 + MGP_C3HHeJ_P0022959 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022960.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499537 169581697 + MGP_C3HHeJ_P0022960 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022961.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499579 169583355 + MGP_C3HHeJ_P0022961 Cd247 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022962.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169499579 169584510 + MGP_C3HHeJ_P0022962 Cd247 protein_coding protein_coding MGP_C3HHeJ_T0022963.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169571976 169575316 + Cd247 protein_coding retained_intron MGP_C3HHeJ_T0022964.1 MGP_C3HHeJ_G0016464.1 mouse_genomes_project 1 169578915 169591538 + Cd247 protein_coding processed_transcript MGP_C3HHeJ_T0023380.1 MGP_C3HHeJ_G0016562.1 mouse_genomes_project 1 177287996 177289432 + MGP_C3HHeJ_P0023380 Olfr16 protein_coding protein_coding MGP_C3HHeJ_T0099856.1 MGP_C3HHeJ_G0038050.1 mouse_genomes_project 1 63038377 63038509 + Snora41 snoRNA snoRNA MGP_C3HHeJ_T0002925.1 MGP_C3HHeJ_G0002747.1 mouse_genomes_project 1 196453938 196454794 - Gm38188 antisense antisense MGP_C3HHeJ_T0023535.1 MGP_C3HHeJ_G0016615.1 mouse_genomes_project 1 183197642 183212297 - MGP_C3HHeJ_P0023535 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023536.1 MGP_C3HHeJ_G0016615.1 mouse_genomes_project 1 183197702 183205190 - MGP_C3HHeJ_P0023536 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023537.1 MGP_C3HHeJ_G0016615.1 mouse_genomes_project 1 183198188 183203976 - MGP_C3HHeJ_P0023537 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011852.1 MGP_C3HHeJ_G0009956.1 mouse_genomes_project 1 28862116 28862478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019670.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974562 56993475 - MGP_C3HHeJ_P0019670 Tyw5 protein_coding protein_coding MGP_C3HHeJ_T0019671.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974565 56992845 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0019672.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974565 56993048 - MGP_C3HHeJ_P0019672 Tyw5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019673.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974730 56977097 - Tyw5 protein_coding processed_transcript MGP_C3HHeJ_T0019674.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974741 56980024 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0019675.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56974991 56992817 - MGP_C3HHeJ_P0019675 Tyw5 protein_coding protein_coding MGP_C3HHeJ_T0019676.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56975011 56978066 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0019677.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56977037 56987849 - Tyw5 protein_coding processed_transcript MGP_C3HHeJ_T0019678.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56977754 56992845 - MGP_C3HHeJ_P0019678 Tyw5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019679.1 MGP_C3HHeJ_G0015810.1 mouse_genomes_project 1 56979510 56992911 - Tyw5 protein_coding retained_intron MGP_C3HHeJ_T0023390.1 MGP_C3HHeJ_G0016569.1 mouse_genomes_project 1 177667411 177669278 - Ackr1 protein_coding processed_transcript MGP_C3HHeJ_T0023391.1 MGP_C3HHeJ_G0016569.1 mouse_genomes_project 1 177667415 177669030 - MGP_C3HHeJ_P0023391 Ackr1 protein_coding protein_coding MGP_C3HHeJ_T0023392.1 MGP_C3HHeJ_G0016569.1 mouse_genomes_project 1 177667417 177669201 - MGP_C3HHeJ_P0023392 Ackr1 protein_coding protein_coding MGP_C3HHeJ_T0000763.1 MGP_C3HHeJ_G0000706.1 mouse_genomes_project 1 196636622 196638468 + TEC TEC MGP_C3HHeJ_T0021931.1 MGP_C3HHeJ_G0016264.1 mouse_genomes_project 1 136416690 136427801 - MGP_C3HHeJ_P0021931 Prelp protein_coding protein_coding MGP_C3HHeJ_T0021932.1 MGP_C3HHeJ_G0016264.1 mouse_genomes_project 1 136419106 136427798 - Prelp protein_coding processed_transcript MGP_C3HHeJ_T0019662.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56360317 56547544 - MGP_C3HHeJ_P0019662 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019663.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56360322 56546900 - MGP_C3HHeJ_P0019663 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019664.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56360324 56543210 - MGP_C3HHeJ_P0019664 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019665.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56520651 56543178 - MGP_C3HHeJ_P0019665 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019666.1 MGP_C3HHeJ_G0015808.1 mouse_genomes_project 1 56543077 56553667 - MGP_C3HHeJ_P0019666 Satb2 protein_coding protein_coding MGP_C3HHeJ_T0019167.1 MGP_C3HHeJ_G0015708.1 mouse_genomes_project 1 35760380 35773560 - MGP_C3HHeJ_P0019167 Coa5 protein_coding protein_coding MGP_C3HHeJ_T0019168.1 MGP_C3HHeJ_G0015708.1 mouse_genomes_project 1 35771967 35773457 - Coa5 protein_coding retained_intron MGP_C3HHeJ_T0011914.1 MGP_C3HHeJ_G0010018.1 mouse_genomes_project 1 45997622 45997918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012043.1 MGP_C3HHeJ_G0010147.1 mouse_genomes_project 1 92232200 92232920 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022400.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156043111 156111008 - MGP_C3HHeJ_P0022400 Smg7 protein_coding protein_coding MGP_C3HHeJ_T0022401.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156043112 156086571 - MGP_C3HHeJ_P0022401 Smg7 protein_coding protein_coding MGP_C3HHeJ_T0022402.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156044986 156111032 - MGP_C3HHeJ_P0022402 Smg7 protein_coding protein_coding MGP_C3HHeJ_T0022403.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156051378 156079562 - Smg7 protein_coding processed_transcript MGP_C3HHeJ_T0022404.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156051400 156055150 - Smg7 protein_coding processed_transcript MGP_C3HHeJ_T0022405.1 MGP_C3HHeJ_G0016359.1 mouse_genomes_project 1 156052070 156055065 - Smg7 protein_coding retained_intron MGP_C3HHeJ_T0021366.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108452049 108484712 - MGP_C3HHeJ_P0021366 Vps4b protein_coding protein_coding MGP_C3HHeJ_T0021367.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108457420 108484773 - MGP_C3HHeJ_P0021367 Vps4b protein_coding protein_coding MGP_C3HHeJ_T0021368.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108465289 108470782 - Vps4b protein_coding retained_intron MGP_C3HHeJ_T0021369.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108467432 108468612 - Vps4b protein_coding retained_intron MGP_C3HHeJ_T0021370.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108473787 108477932 - Vps4b protein_coding processed_transcript MGP_C3HHeJ_T0021371.1 MGP_C3HHeJ_G0016140.1 mouse_genomes_project 1 108479082 108484622 - Vps4b protein_coding retained_intron MGP_C3HHeJ_T0020229.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74586227 74593290 - MGP_C3HHeJ_P0020229 Aamp protein_coding protein_coding MGP_C3HHeJ_T0020230.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74586233 74592568 - Aamp protein_coding retained_intron MGP_C3HHeJ_T0020231.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74586233 74593232 - MGP_C3HHeJ_P0020231 Aamp protein_coding protein_coding MGP_C3HHeJ_T0020232.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74587320 74592531 - MGP_C3HHeJ_P0020232 Aamp protein_coding protein_coding MGP_C3HHeJ_T0020233.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74587447 74589530 - Aamp protein_coding retained_intron MGP_C3HHeJ_T0020234.1 MGP_C3HHeJ_G0015914.1 mouse_genomes_project 1 74589583 74592973 - MGP_C3HHeJ_P0020234 Aamp protein_coding protein_coding MGP_C3HHeJ_T0023424.1 MGP_C3HHeJ_G0016583.1 mouse_genomes_project 1 178646896 178647850 + MGP_C3HHeJ_P0023424 Olfr430 protein_coding protein_coding MGP_C3HHeJ_T0021507.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122155716 122222749 + MGP_C3HHeJ_P0021507 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021508.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122155724 122222749 + MGP_C3HHeJ_P0021508 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021509.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122155729 122222749 + MGP_C3HHeJ_P0021509 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021510.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122186061 122201010 + 3110009E18Rik protein_coding processed_transcript MGP_C3HHeJ_T0021511.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122186133 122205060 + MGP_C3HHeJ_P0021511 3110009E18Rik protein_coding protein_coding MGP_C3HHeJ_T0021512.1 MGP_C3HHeJ_G0016173.1 mouse_genomes_project 1 122196024 122209097 + 3110009E18Rik protein_coding processed_transcript MGP_C3HHeJ_T0011152.1 MGP_C3HHeJ_G0009285.1 mouse_genomes_project 1 59385368 59385453 + Gm24545 misc_RNA misc_RNA MGP_C3HHeJ_T0023483.1 MGP_C3HHeJ_G0016604.1 mouse_genomes_project 1 180516087 180517984 + MGP_C3HHeJ_P0023483 Gm38100 protein_coding protein_coding MGP_C3HHeJ_T0023484.1 MGP_C3HHeJ_G0016604.1 mouse_genomes_project 1 180516128 180517457 + MGP_C3HHeJ_P0023484 Gm38100 protein_coding protein_coding MGP_C3HHeJ_T0023186.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196030 175202072 - MGP_C3HHeJ_P0023186 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0023187.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196034 175202005 - MGP_C3HHeJ_P0023187 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0023188.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196043 175197001 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023189.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196043 175202036 - MGP_C3HHeJ_P0023189 Usp21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023190.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196043 175202042 - MGP_C3HHeJ_P0023190 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0023191.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196387 175197261 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023192.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175196893 175198668 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023193.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175197125 175198079 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023194.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175197499 175199695 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023195.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175197612 175201031 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023196.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175198543 175202040 - Usp21 protein_coding retained_intron MGP_C3HHeJ_T0023197.1 MGP_C3HHeJ_G0016517.1 mouse_genomes_project 1 175199012 175200887 - MGP_C3HHeJ_P0023197 Usp21 protein_coding protein_coding MGP_C3HHeJ_T0101570.1 MGP_C3HHeJ_G0039536.1 mouse_genomes_project 1 98544024 98668666 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022920.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169020588 169151882 - MGP_C3HHeJ_P0022920 Dcaf6 protein_coding protein_coding MGP_C3HHeJ_T0022921.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169021207 169051121 - Dcaf6 protein_coding retained_intron MGP_C3HHeJ_T0022922.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169050180 169094600 - MGP_C3HHeJ_P0022922 Dcaf6 protein_coding protein_coding MGP_C3HHeJ_T0022923.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169050610 169094615 - MGP_C3HHeJ_P0022923 Dcaf6 protein_coding protein_coding MGP_C3HHeJ_T0022924.1 MGP_C3HHeJ_G0016458.1 mouse_genomes_project 1 169067782 169151892 - Dcaf6 protein_coding processed_transcript MGP_C3HHeJ_T0020421.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495940 75500709 + MGP_C3HHeJ_P0020421 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020422.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495948 75496974 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020423.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495950 75497338 + MGP_C3HHeJ_P0020423 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020424.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495972 75499345 + MGP_C3HHeJ_P0020424 Stk16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020425.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495976 75497337 + MGP_C3HHeJ_P0020425 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020426.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495978 75499342 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020427.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75495982 75498240 + Stk16 protein_coding processed_transcript MGP_C3HHeJ_T0020428.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75496156 75498331 + MGP_C3HHeJ_P0020428 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020429.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75496342 75499054 + MGP_C3HHeJ_P0020429 Stk16 protein_coding protein_coding MGP_C3HHeJ_T0020430.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497064 75498290 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020431.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497105 75498196 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020432.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497107 75497508 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020433.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497501 75498258 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020434.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497726 75499119 + Stk16 protein_coding processed_transcript MGP_C3HHeJ_T0020435.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75497734 75499016 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0020436.1 MGP_C3HHeJ_G0015947.1 mouse_genomes_project 1 75498163 75499134 + Stk16 protein_coding retained_intron MGP_C3HHeJ_T0000446.1 MGP_C3HHeJ_G0000393.1 mouse_genomes_project 1 55075658 55077254 + TEC TEC MGP_C3HHeJ_T0099863.1 MGP_C3HHeJ_G0038057.1 mouse_genomes_project 1 87059396 87059529 - Snora75 snoRNA snoRNA MGP_C3HHeJ_T0002899.1 MGP_C3HHeJ_G0002725.1 mouse_genomes_project 1 183801044 183819962 - Gm16564 antisense antisense MGP_C3HHeJ_T0012069.1 MGP_C3HHeJ_G0010173.1 mouse_genomes_project 1 103385555 103385791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021947.1 MGP_C3HHeJ_G0016269.1 mouse_genomes_project 1 136713723 136721507 + MGP_C3HHeJ_P0021947 Mybph protein_coding protein_coding MGP_C3HHeJ_T0021948.1 MGP_C3HHeJ_G0016269.1 mouse_genomes_project 1 136713732 136721508 + MGP_C3HHeJ_P0021948 Mybph protein_coding protein_coding MGP_C3HHeJ_T0019836.1 MGP_C3HHeJ_G0015838.1 mouse_genomes_project 1 59345697 59432632 - Sumo1 protein_coding processed_transcript MGP_C3HHeJ_T0019841.1 MGP_C3HHeJ_G0015838.1 mouse_genomes_project 1 59399653 59432674 - MGP_C3HHeJ_P0019841 Sumo1 protein_coding protein_coding MGP_C3HHeJ_T0019842.1 MGP_C3HHeJ_G0015838.1 mouse_genomes_project 1 59403613 59432674 - Sumo1 protein_coding retained_intron MGP_C3HHeJ_T0009387.1 MGP_C3HHeJ_G0007520.1 mouse_genomes_project 1 27365793 27365918 + Mir6342 miRNA miRNA MGP_C3HHeJ_T0022479.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158458539 158479040 - MGP_C3HHeJ_P0022479 Mr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022480.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158459136 158465281 - Mr1 protein_coding retained_intron MGP_C3HHeJ_T0022481.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158459140 158479019 - MGP_C3HHeJ_P0022481 Mr1 protein_coding protein_coding MGP_C3HHeJ_T0022482.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158460093 158479040 - MGP_C3HHeJ_P0022482 Mr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022483.1 MGP_C3HHeJ_G0016376.1 mouse_genomes_project 1 158467046 158479050 - Mr1 protein_coding retained_intron MGP_C3HHeJ_T0011901.1 MGP_C3HHeJ_G0010005.1 mouse_genomes_project 1 43354164 43354584 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002913.1 MGP_C3HHeJ_G0002737.1 mouse_genomes_project 1 192332672 192335387 + 1700007P06Rik antisense antisense MGP_C3HHeJ_T0021792.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134624875 134695555 + MGP_C3HHeJ_P0021792 Lemd1 protein_coding protein_coding MGP_C3HHeJ_T0021793.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134624899 134693710 + MGP_C3HHeJ_P0021793 Lemd1 protein_coding protein_coding MGP_C3HHeJ_T0021794.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134624901 134642964 + Lemd1 protein_coding processed_transcript MGP_C3HHeJ_T0021795.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134634366 134639201 + Lemd1 protein_coding processed_transcript MGP_C3HHeJ_T0021796.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134637269 134637927 + Lemd1 protein_coding processed_transcript MGP_C3HHeJ_T0021797.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134660462 134693517 + MGP_C3HHeJ_P0021797 Lemd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021798.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134660491 134693337 + MGP_C3HHeJ_P0021798 Lemd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021799.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134662862 134664297 + Lemd1 protein_coding retained_intron MGP_C3HHeJ_T0021800.1 MGP_C3HHeJ_G0016236.1 mouse_genomes_project 1 134662862 134693362 + MGP_C3HHeJ_P0021800 Lemd1 protein_coding protein_coding MGP_C3HHeJ_T0016856.1 MGP_C3HHeJ_G0014882.1 mouse_genomes_project 1 169491889 169500182 + Gm16565 processed_transcript sense_overlapping MGP_C3HHeJ_T0016857.1 MGP_C3HHeJ_G0014882.1 mouse_genomes_project 1 169492013 169492982 + Gm16565 processed_transcript processed_transcript MGP_C3HHeJ_T0011815.1 MGP_C3HHeJ_G0009919.1 mouse_genomes_project 1 16161777 16162686 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005680.1 MGP_C3HHeJ_G0004762.1 mouse_genomes_project 1 62971925 62973599 + Ino80dos lincRNA lincRNA MGP_C3HHeJ_T0005681.1 MGP_C3HHeJ_G0004762.1 mouse_genomes_project 1 62972822 62973970 + Ino80dos lincRNA lincRNA MGP_C3HHeJ_T0005682.1 MGP_C3HHeJ_G0004762.1 mouse_genomes_project 1 62973378 63016467 + Ino80dos lincRNA lincRNA MGP_C3HHeJ_T0021561.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128066587 128111859 - MGP_C3HHeJ_P0021561 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021562.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128071246 128111032 - MGP_C3HHeJ_P0021562 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021563.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128071280 128112574 - MGP_C3HHeJ_P0021563 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021564.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128072063 128110561 - MGP_C3HHeJ_P0021564 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021565.1 MGP_C3HHeJ_G0016186.1 mouse_genomes_project 1 128072480 128112747 - MGP_C3HHeJ_P0021565 Lypd1 protein_coding protein_coding MGP_C3HHeJ_T0021205.1 MGP_C3HHeJ_G0016107.1 mouse_genomes_project 1 94549034 94582912 + MGP_C3HHeJ_P0021205 Ano7 protein_coding protein_coding MGP_C3HHeJ_T0021206.1 MGP_C3HHeJ_G0016107.1 mouse_genomes_project 1 94549034 94582008 + MGP_C3HHeJ_P0021206 Ano7 protein_coding protein_coding MGP_C3HHeJ_T0021207.1 MGP_C3HHeJ_G0016107.1 mouse_genomes_project 1 94580465 94582178 + MGP_C3HHeJ_P0021207 Ano7 protein_coding protein_coding MGP_C3HHeJ_T0000617.1 MGP_C3HHeJ_G0000563.1 mouse_genomes_project 1 140505820 140506115 + TEC TEC MGP_C3HHeJ_T0005900.1 MGP_C3HHeJ_G0004936.1 mouse_genomes_project 1 168355827 168367868 - lincRNA lincRNA MGP_C3HHeJ_T0005901.1 MGP_C3HHeJ_G0004936.1 mouse_genomes_project 1 168356004 168367896 - lincRNA lincRNA MGP_C3HHeJ_T0002717.1 MGP_C3HHeJ_G0002586.1 mouse_genomes_project 1 36222171 36229909 + Gm26805 antisense antisense MGP_C3HHeJ_T0019333.1 MGP_C3HHeJ_G0015743.1 mouse_genomes_project 1 39254580 39274342 - MGP_C3HHeJ_P0019333 Mfsd9 protein_coding protein_coding MGP_C3HHeJ_T0019334.1 MGP_C3HHeJ_G0015743.1 mouse_genomes_project 1 39254583 39274366 - MGP_C3HHeJ_P0019334 Mfsd9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019335.1 MGP_C3HHeJ_G0015743.1 mouse_genomes_project 1 39265171 39274336 - Mfsd9 protein_coding retained_intron MGP_C3HHeJ_T0012029.1 MGP_C3HHeJ_G0010133.1 mouse_genomes_project 1 83776772 83777613 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098595.1 MGP_C3HHeJ_G0036789.1 mouse_genomes_project 1 1791819 1791922 - Gm25493 snRNA snRNA MGP_C3HHeJ_T0011880.1 MGP_C3HHeJ_G0009984.1 mouse_genomes_project 1 33182653 33183089 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009477.1 MGP_C3HHeJ_G0007610.1 mouse_genomes_project 1 197422480 197422561 - Mir3473c miRNA miRNA MGP_C3HHeJ_T0000508.1 MGP_C3HHeJ_G0000455.1 mouse_genomes_project 1 83617170 83618263 - TEC TEC MGP_C3HHeJ_T0099893.1 MGP_C3HHeJ_G0038087.1 mouse_genomes_project 1 156687929 156688069 + Gm25588 snoRNA snoRNA MGP_C3HHeJ_T0002871.1 MGP_C3HHeJ_G0002702.1 mouse_genomes_project 1 167778448 167782235 - Gm16587 antisense antisense MGP_C3HHeJ_T0021104.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93539692 93575115 - MGP_C3HHeJ_P0021104 Ndufa10 protein_coding protein_coding MGP_C3HHeJ_T0021105.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93539961 93575012 - MGP_C3HHeJ_P0021105 Ndufa10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021106.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93540523 93562022 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021107.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93552732 93564296 - Ndufa10 protein_coding processed_transcript MGP_C3HHeJ_T0021108.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93563528 93572169 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021109.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93564409 93572358 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021110.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93568721 93575002 - MGP_C3HHeJ_P0021110 Ndufa10 protein_coding protein_coding MGP_C3HHeJ_T0021111.1 MGP_C3HHeJ_G0016081.1 mouse_genomes_project 1 93574033 93575022 - Ndufa10 protein_coding retained_intron MGP_C3HHeJ_T0021615.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342045 130422408 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021616.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342065 130418410 + MGP_C3HHeJ_P0021616 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021617.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342068 130478391 + MGP_C3HHeJ_P0021617 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021618.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342068 130428132 + MGP_C3HHeJ_P0021618 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021619.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130342075 130351328 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021620.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130381451 130426181 + MGP_C3HHeJ_P0021620 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021621.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130381474 130392814 + MGP_C3HHeJ_P0021621 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021622.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130391301 130418463 + MGP_C3HHeJ_P0021622 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021623.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130410819 130417422 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021624.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130413938 130418398 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021625.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130416115 130427932 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021626.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130418423 130432782 + MGP_C3HHeJ_P0021626 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021627.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130421017 130450553 + MGP_C3HHeJ_P0021627 R3hdm1 protein_coding protein_coding MGP_C3HHeJ_T0021628.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130432113 130435822 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021629.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130446323 130478390 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0021630.1 MGP_C3HHeJ_G0016195.1 mouse_genomes_project 1 130476033 130478391 + R3hdm1 protein_coding retained_intron MGP_C3HHeJ_T0020792.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87052918 87067603 - MGP_C3HHeJ_P0020792 Ncl protein_coding protein_coding MGP_C3HHeJ_T0020793.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87058722 87067567 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020794.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87058723 87059439 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020795.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87058791 87060291 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020796.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87059328 87060534 - Ncl protein_coding retained_intron MGP_C3HHeJ_T0020797.1 MGP_C3HHeJ_G0016012.1 mouse_genomes_project 1 87065538 87067172 - MGP_C3HHeJ_P0020797 Ncl protein_coding protein_coding MGP_C3HHeJ_T0009400.1 MGP_C3HHeJ_G0007533.1 mouse_genomes_project 1 48212327 48212769 + Gm22693 miRNA miRNA MGP_C3HHeJ_T0012181.1 MGP_C3HHeJ_G0010285.1 mouse_genomes_project 1 153679701 153680061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000672.1 MGP_C3HHeJ_G0000617.1 mouse_genomes_project 1 161799645 161804213 + TEC TEC MGP_C3HHeJ_T0009427.1 MGP_C3HHeJ_G0007560.1 mouse_genomes_project 1 87386028 87386085 - Gm22955 miRNA miRNA MGP_C3HHeJ_T0023268.1 MGP_C3HHeJ_G0016536.1 mouse_genomes_project 1 176184748 176187244 + MGP_C3HHeJ_P0023268 Gm10521 protein_coding protein_coding MGP_C3HHeJ_T0098658.1 MGP_C3HHeJ_G0036852.1 mouse_genomes_project 1 147542441 147542548 - Gm23672 snRNA snRNA MGP_C3HHeJ_T0005780.1 MGP_C3HHeJ_G0004841.1 mouse_genomes_project 1 99955189 99976475 + Gm7967 lincRNA lincRNA MGP_C3HHeJ_T0005781.1 MGP_C3HHeJ_G0004841.1 mouse_genomes_project 1 99955190 99976235 + Gm7967 lincRNA lincRNA MGP_C3HHeJ_T0009465.1 MGP_C3HHeJ_G0007598.1 mouse_genomes_project 1 174975788 174975850 - Mir6546 miRNA miRNA MGP_C3HHeJ_T0012042.1 MGP_C3HHeJ_G0010146.1 mouse_genomes_project 1 90241290 90242046 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012034.1 MGP_C3HHeJ_G0010138.1 mouse_genomes_project 1 87034788 87035551 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019358.1 MGP_C3HHeJ_G0015749.1 mouse_genomes_project 1 41720296 41737521 + MGP_C3HHeJ_P0019358 AI597479 protein_coding protein_coding MGP_C3HHeJ_T0020191.1 MGP_C3HHeJ_G0015904.1 mouse_genomes_project 1 72956309 72958860 + MGP_C3HHeJ_P0020191 Rpl37a protein_coding protein_coding MGP_C3HHeJ_T0009437.1 MGP_C3HHeJ_G0007570.1 mouse_genomes_project 1 102350291 102350400 + Gm25537 miRNA miRNA MGP_C3HHeJ_T0020952.1 MGP_C3HHeJ_G0016048.1 mouse_genomes_project 1 89111960 89122337 + MGP_C3HHeJ_P0020952 Ugt1a1 protein_coding protein_coding MGP_C3HHeJ_T0020123.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69693280 69844724 - MGP_C3HHeJ_P0020123 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020124.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69693825 69846076 - MGP_C3HHeJ_P0020124 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020125.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69846108 - MGP_C3HHeJ_P0020125 Ikzf2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0020126.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69843001 - MGP_C3HHeJ_P0020126 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020127.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69843001 - MGP_C3HHeJ_P0020127 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020128.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69694011 69843001 - MGP_C3HHeJ_P0020128 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020129.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69732881 69844138 - MGP_C3HHeJ_P0020129 Ikzf2 protein_coding protein_coding MGP_C3HHeJ_T0020130.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69840401 69843380 - Ikzf2 protein_coding retained_intron MGP_C3HHeJ_T0020131.1 MGP_C3HHeJ_G0015890.1 mouse_genomes_project 1 69840402 69845971 - Ikzf2 protein_coding retained_intron MGP_C3HHeJ_T0002713.1 MGP_C3HHeJ_G0002583.1 mouse_genomes_project 1 35438583 35439575 - Gm37020 antisense antisense MGP_C3HHeJ_T0019718.1 MGP_C3HHeJ_G0015818.1 mouse_genomes_project 1 57888607 57985370 + MGP_C3HHeJ_P0019718 Aox2 protein_coding protein_coding MGP_C3HHeJ_T0019719.1 MGP_C3HHeJ_G0015818.1 mouse_genomes_project 1 57892814 57981436 + MGP_C3HHeJ_P0019719 Aox2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101333.1 MGP_C3HHeJ_G0039413.1 mouse_genomes_project 1 58269533 58302022 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101334.1 MGP_C3HHeJ_G0039413.1 mouse_genomes_project 1 58301135 58301265 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0000670.1 MGP_C3HHeJ_G0000615.1 mouse_genomes_project 1 160783404 160785800 - TEC TEC MGP_C3HHeJ_T0101575.1 MGP_C3HHeJ_G0039541.1 mouse_genomes_project 1 106214459 106215819 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011843.1 MGP_C3HHeJ_G0009947.1 mouse_genomes_project 1 26430540 26430814 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000678.1 MGP_C3HHeJ_G0000623.1 mouse_genomes_project 1 163725643 163727517 + TEC TEC MGP_C3HHeJ_T0000645.1 MGP_C3HHeJ_G0000590.1 mouse_genomes_project 1 152509852 152511310 - TEC TEC MGP_C3HHeJ_T0012045.1 MGP_C3HHeJ_G0010149.1 mouse_genomes_project 1 92545930 92546123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020617.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80701139 80777230 - MGP_C3HHeJ_P0020617 Cul3 protein_coding protein_coding MGP_C3HHeJ_T0020618.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80703039 80777061 - MGP_C3HHeJ_P0020618 Cul3 protein_coding protein_coding MGP_C3HHeJ_T0020619.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80703163 80713659 - MGP_C3HHeJ_P0020619 Cul3 protein_coding protein_coding MGP_C3HHeJ_T0020620.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80703458 80712782 - Cul3 protein_coding retained_intron MGP_C3HHeJ_T0020621.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80723268 80777057 - MGP_C3HHeJ_P0020621 Cul3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020622.1 MGP_C3HHeJ_G0015978.1 mouse_genomes_project 1 80725068 80777029 - MGP_C3HHeJ_P0020622 Cul3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020816.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456581 87510181 + Dis3l2 protein_coding processed_transcript MGP_C3HHeJ_T0020817.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456592 87850987 + MGP_C3HHeJ_P0020817 Dis3l2 protein_coding protein_coding MGP_C3HHeJ_T0020818.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456601 87649983 + Dis3l2 protein_coding retained_intron MGP_C3HHeJ_T0020819.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456601 87850087 + MGP_C3HHeJ_P0020819 Dis3l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020820.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87456616 87850984 + MGP_C3HHeJ_P0020820 Dis3l2 protein_coding protein_coding MGP_C3HHeJ_T0020821.1 MGP_C3HHeJ_G0016019.1 mouse_genomes_project 1 87615561 87616296 + Dis3l2 protein_coding retained_intron MGP_C3HHeJ_T0011154.1 MGP_C3HHeJ_G0009287.1 mouse_genomes_project 1 70089084 70089359 - Gm22665 misc_RNA misc_RNA MGP_C3HHeJ_T0012020.1 MGP_C3HHeJ_G0010124.1 mouse_genomes_project 1 82062667 82065994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023455.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180197999 180223761 - MGP_C3HHeJ_P0023455 Fh1 protein_coding protein_coding MGP_C3HHeJ_T0023456.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180199001 180201907 - Fh1 protein_coding retained_intron MGP_C3HHeJ_T0023457.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180199003 180204269 - Fh1 protein_coding retained_intron MGP_C3HHeJ_T0023458.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180199009 180207336 - MGP_C3HHeJ_P0023458 Fh1 protein_coding protein_coding MGP_C3HHeJ_T0023459.1 MGP_C3HHeJ_G0016598.1 mouse_genomes_project 1 180212904 180223699 - MGP_C3HHeJ_P0023459 Fh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023408.1 MGP_C3HHeJ_G0016575.1 mouse_genomes_project 1 178234005 178252508 - MGP_C3HHeJ_P0023408 AI607873 protein_coding protein_coding MGP_C3HHeJ_T0023409.1 MGP_C3HHeJ_G0016575.1 mouse_genomes_project 1 178234258 178252444 - MGP_C3HHeJ_P0023409 AI607873 protein_coding protein_coding MGP_C3HHeJ_T0005749.1 MGP_C3HHeJ_G0004813.1 mouse_genomes_project 1 89746533 89747380 + Platr5 lincRNA lincRNA MGP_C3HHeJ_T0005750.1 MGP_C3HHeJ_G0004813.1 mouse_genomes_project 1 89746597 89747353 + Platr5 lincRNA lincRNA MGP_C3HHeJ_T0021644.1 MGP_C3HHeJ_G0016200.1 mouse_genomes_project 1 130839337 130843412 - MGP_C3HHeJ_P0021644 Cxcr4 protein_coding protein_coding MGP_C3HHeJ_T0021645.1 MGP_C3HHeJ_G0016200.1 mouse_genomes_project 1 130840229 130843415 - MGP_C3HHeJ_P0021645 Cxcr4 protein_coding protein_coding MGP_C3HHeJ_T0005991.1 MGP_C3HHeJ_G0005007.1 mouse_genomes_project 1 200520337 200520688 - Gm37027 lincRNA lincRNA MGP_C3HHeJ_T0020096.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66707320 66786942 - MGP_C3HHeJ_P0020096 Kansl1l protein_coding protein_coding MGP_C3HHeJ_T0020097.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66707437 66803233 - MGP_C3HHeJ_P0020097 Kansl1l protein_coding protein_coding MGP_C3HHeJ_T0020098.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66724271 66803249 - MGP_C3HHeJ_P0020098 Kansl1l protein_coding protein_coding MGP_C3HHeJ_T0020099.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66766702 66794507 - Kansl1l protein_coding processed_transcript MGP_C3HHeJ_T0020100.1 MGP_C3HHeJ_G0015884.1 mouse_genomes_project 1 66786473 66803233 - Kansl1l protein_coding retained_intron MGP_C3HHeJ_T0023468.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180297806 180344666 + Wdr64 protein_coding processed_transcript MGP_C3HHeJ_T0023469.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180297806 180418396 + MGP_C3HHeJ_P0023469 Wdr64 protein_coding protein_coding MGP_C3HHeJ_T0023470.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180297806 180418396 + MGP_C3HHeJ_P0023470 Wdr64 protein_coding protein_coding MGP_C3HHeJ_T0023471.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180298002 180418028 + MGP_C3HHeJ_P0023471 Wdr64 protein_coding protein_coding MGP_C3HHeJ_T0023472.1 MGP_C3HHeJ_G0016602.1 mouse_genomes_project 1 180369783 180418393 + MGP_C3HHeJ_P0023472 Wdr64 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021185.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94404638 94474429 + MGP_C3HHeJ_P0021185 Sned1 protein_coding protein_coding MGP_C3HHeJ_T0021186.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94404648 94454999 + Sned1 protein_coding retained_intron MGP_C3HHeJ_T0021187.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94444945 94452808 + Sned1 protein_coding processed_transcript MGP_C3HHeJ_T0021188.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94451727 94469140 + MGP_C3HHeJ_P0021188 Sned1 protein_coding protein_coding MGP_C3HHeJ_T0021189.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94457334 94469829 + Sned1 protein_coding retained_intron MGP_C3HHeJ_T0021190.1 MGP_C3HHeJ_G0016103.1 mouse_genomes_project 1 94469047 94469951 + Sned1 protein_coding retained_intron MGP_C3HHeJ_T0000354.1 MGP_C3HHeJ_G0000304.1 mouse_genomes_project 1 10870084 10878505 - TEC TEC MGP_C3HHeJ_T0012168.1 MGP_C3HHeJ_G0010272.1 mouse_genomes_project 1 148127383 148128379 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011156.1 MGP_C3HHeJ_G0009289.1 mouse_genomes_project 1 75100576 75100669 + Gm27507 misc_RNA misc_RNA MGP_C3HHeJ_T0020751.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86706029 86713907 + Spata3 protein_coding processed_transcript MGP_C3HHeJ_T0020752.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86707918 86718549 + Spata3 protein_coding processed_transcript MGP_C3HHeJ_T0020753.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711177 86719259 + MGP_C3HHeJ_P0020753 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020754.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711178 86713904 + MGP_C3HHeJ_P0020754 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020755.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711181 86713906 + MGP_C3HHeJ_P0020755 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020756.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711181 86719259 + MGP_C3HHeJ_P0020756 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020757.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711181 86716411 + MGP_C3HHeJ_P0020757 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020758.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711188 86719222 + MGP_C3HHeJ_P0020758 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020759.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711195 86718563 + MGP_C3HHeJ_P0020759 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020760.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711196 86713907 + MGP_C3HHeJ_P0020760 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0020761.1 MGP_C3HHeJ_G0016005.1 mouse_genomes_project 1 86711340 86718565 + MGP_C3HHeJ_P0020761 Spata3 protein_coding protein_coding MGP_C3HHeJ_T0002856.1 MGP_C3HHeJ_G0002691.1 mouse_genomes_project 1 161912065 161982989 - Gm37679 antisense antisense MGP_C3HHeJ_T0012087.1 MGP_C3HHeJ_G0010191.1 mouse_genomes_project 1 110806049 110807176 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021705.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133551832 + Eif2d protein_coding retained_intron MGP_C3HHeJ_T0021706.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133570169 + MGP_C3HHeJ_P0021706 Eif2d protein_coding protein_coding MGP_C3HHeJ_T0021707.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133576303 + MGP_C3HHeJ_P0021707 Eif2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021708.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133568930 + MGP_C3HHeJ_P0021708 Eif2d protein_coding protein_coding MGP_C3HHeJ_T0021709.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133576717 + MGP_C3HHeJ_P0021709 Eif2d protein_coding protein_coding MGP_C3HHeJ_T0021710.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133571542 + MGP_C3HHeJ_P0021710 Eif2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021711.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133547196 133583969 + MGP_C3HHeJ_P0021711 Eif2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021712.1 MGP_C3HHeJ_G0016219.1 mouse_genomes_project 1 133561557 133568201 + Eif2d protein_coding processed_transcript MGP_C3HHeJ_T0023675.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 185989295 186010732 - MGP_C3HHeJ_P0023675 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0023676.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 186003269 186032145 - MGP_C3HHeJ_P0023676 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0023677.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 186003269 186032145 - MGP_C3HHeJ_P0023677 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0023678.1 MGP_C3HHeJ_G0016642.1 mouse_genomes_project 1 186010710 186035480 - MGP_C3HHeJ_P0023678 Ephx1 protein_coding protein_coding MGP_C3HHeJ_T0000381.1 MGP_C3HHeJ_G0000329.1 mouse_genomes_project 1 23290235 23293089 - TEC TEC MGP_C3HHeJ_T0021501.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147856 122155483 - MGP_C3HHeJ_P0021501 Dbi protein_coding protein_coding MGP_C3HHeJ_T0021502.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147860 122155547 - MGP_C3HHeJ_P0021502 Dbi protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021503.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147939 122154700 - Dbi protein_coding processed_transcript MGP_C3HHeJ_T0021504.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122147970 122155467 - MGP_C3HHeJ_P0021504 Dbi protein_coding protein_coding MGP_C3HHeJ_T0021505.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122150580 122155577 - Dbi protein_coding retained_intron MGP_C3HHeJ_T0021506.1 MGP_C3HHeJ_G0016172.1 mouse_genomes_project 1 122154287 122155544 - Dbi protein_coding retained_intron MGP_C3HHeJ_T0018586.1 MGP_C3HHeJ_G0015595.1 mouse_genomes_project 1 6659882 6661925 + MGP_C3HHeJ_P0018586 Rrs1 protein_coding protein_coding MGP_C3HHeJ_T0021521.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123353399 123376926 - MGP_C3HHeJ_P0021521 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021522.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123354951 123356375 - Insig2 protein_coding retained_intron MGP_C3HHeJ_T0021523.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123354982 123376938 - MGP_C3HHeJ_P0021523 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021524.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123355936 123361489 - Insig2 protein_coding retained_intron MGP_C3HHeJ_T0021525.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123355993 123376910 - MGP_C3HHeJ_P0021525 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021526.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123356293 123372266 - MGP_C3HHeJ_P0021526 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021527.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123360920 123368803 - Insig2 protein_coding retained_intron MGP_C3HHeJ_T0021528.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123368738 123376827 - MGP_C3HHeJ_P0021528 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021529.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123368808 123376833 - MGP_C3HHeJ_P0021529 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0021530.1 MGP_C3HHeJ_G0016178.1 mouse_genomes_project 1 123368835 123381708 - MGP_C3HHeJ_P0021530 Insig2 protein_coding protein_coding MGP_C3HHeJ_T0000349.1 MGP_C3HHeJ_G0000299.1 mouse_genomes_project 1 10466990 10468606 - TEC TEC MGP_C3HHeJ_T0005978.1 MGP_C3HHeJ_G0004996.1 mouse_genomes_project 1 196362822 196364808 + Gm31373 lincRNA lincRNA MGP_C3HHeJ_T0000643.1 MGP_C3HHeJ_G0000588.1 mouse_genomes_project 1 150567263 150572061 + TEC TEC MGP_C3HHeJ_T0020172.1 MGP_C3HHeJ_G0015897.1 mouse_genomes_project 1 72387116 72440730 - MGP_C3HHeJ_P0020172 Mreg protein_coding protein_coding MGP_C3HHeJ_T0011783.1 MGP_C3HHeJ_G0009887.1 mouse_genomes_project 1 6363911 6364429 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005835.1 MGP_C3HHeJ_G0004885.1 mouse_genomes_project 1 137179460 137183713 - Gm26783 lincRNA lincRNA MGP_C3HHeJ_T0002688.1 MGP_C3HHeJ_G0002564.1 mouse_genomes_project 1 7114746 7125956 + Gm15818 antisense antisense MGP_C3HHeJ_T0012208.1 MGP_C3HHeJ_G0010312.1 mouse_genomes_project 1 165324530 165326120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019246.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257375 37290926 - MGP_C3HHeJ_P0019246 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019247.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257375 37290847 - MGP_C3HHeJ_P0019247 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019248.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257383 37265145 - MGP_C3HHeJ_P0019248 Chst10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019249.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37257385 37290998 - MGP_C3HHeJ_P0019249 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019250.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37263565 37290990 - MGP_C3HHeJ_P0019250 Chst10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019251.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37267344 37290971 - MGP_C3HHeJ_P0019251 Chst10 protein_coding protein_coding MGP_C3HHeJ_T0019252.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37283390 37290823 - Chst10 protein_coding retained_intron MGP_C3HHeJ_T0019253.1 MGP_C3HHeJ_G0015723.1 mouse_genomes_project 1 37283391 37290847 - Chst10 protein_coding retained_intron MGP_C3HHeJ_T0023118.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175022728 175035982 + MGP_C3HHeJ_P0023118 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023119.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175022799 175035932 + MGP_C3HHeJ_P0023119 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023120.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175030947 175036120 + MGP_C3HHeJ_P0023120 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023121.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175030950 175032425 + Cfap126 protein_coding processed_transcript MGP_C3HHeJ_T0023122.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175031945 175035192 + MGP_C3HHeJ_P0023122 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0023123.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175032418 175036095 + MGP_C3HHeJ_P0023123 Cfap126 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023124.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175032442 175035236 + MGP_C3HHeJ_P0023124 Cfap126 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023125.1 MGP_C3HHeJ_G0016505.1 mouse_genomes_project 1 175034220 175035812 + MGP_C3HHeJ_P0023125 Cfap126 protein_coding protein_coding MGP_C3HHeJ_T0098661.1 MGP_C3HHeJ_G0036855.1 mouse_genomes_project 1 154213137 154213244 - Gm22756 snRNA snRNA MGP_C3HHeJ_T0022930.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177319 169263111 + MGP_C3HHeJ_P0022930 Adcy10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022931.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177319 169262506 + MGP_C3HHeJ_P0022931 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022932.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177319 169263481 + MGP_C3HHeJ_P0022932 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022933.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177325 169262505 + MGP_C3HHeJ_P0022933 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022934.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177329 169181677 + Adcy10 protein_coding processed_transcript MGP_C3HHeJ_T0022935.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169177347 169262503 + MGP_C3HHeJ_P0022935 Adcy10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022936.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169196069 169254453 + MGP_C3HHeJ_P0022936 Adcy10 protein_coding protein_coding MGP_C3HHeJ_T0022937.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169201824 169229986 + Adcy10 protein_coding retained_intron MGP_C3HHeJ_T0022938.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169209606 169211418 + Adcy10 protein_coding retained_intron MGP_C3HHeJ_T0022939.1 MGP_C3HHeJ_G0016460.1 mouse_genomes_project 1 169229809 169238013 + Adcy10 protein_coding processed_transcript MGP_C3HHeJ_T0000720.1 MGP_C3HHeJ_G0000665.1 mouse_genomes_project 1 181525019 181525742 + TEC TEC MGP_C3HHeJ_T0012232.1 MGP_C3HHeJ_G0010336.1 mouse_genomes_project 1 175959395 175959923 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019139.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35330020 35382073 + MGP_C3HHeJ_P0019139 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019140.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35332717 35368891 + MGP_C3HHeJ_P0019140 Vwa3b protein_coding non_stop_decay MGP_C3HHeJ_T0019141.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35332729 35382072 + MGP_C3HHeJ_P0019141 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019142.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35332797 35381802 + MGP_C3HHeJ_P0019142 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019143.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35338742 35500640 + MGP_C3HHeJ_P0019143 Vwa3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019144.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35338788 35501644 + MGP_C3HHeJ_P0019144 Vwa3b protein_coding unknown_likely_coding MGP_C3HHeJ_T0019145.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35406919 35415481 + Vwa3b protein_coding retained_intron MGP_C3HHeJ_T0019146.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35407056 35435296 + Vwa3b protein_coding processed_transcript MGP_C3HHeJ_T0019147.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35441810 35447652 + MGP_C3HHeJ_P0019147 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019148.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35461272 35501636 + MGP_C3HHeJ_P0019148 Vwa3b protein_coding protein_coding MGP_C3HHeJ_T0019149.1 MGP_C3HHeJ_G0015705.1 mouse_genomes_project 1 35500885 35501644 + Vwa3b protein_coding retained_intron MGP_C3HHeJ_T0023089.1 MGP_C3HHeJ_G0016496.1 mouse_genomes_project 1 174500816 174540412 + MGP_C3HHeJ_P0023089 Olfml2b protein_coding protein_coding MGP_C3HHeJ_T0022742.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164701984 164724279 + MGP_C3HHeJ_P0022742 Ankrd45 protein_coding protein_coding MGP_C3HHeJ_T0022743.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164702005 164731211 + MGP_C3HHeJ_P0022743 Ankrd45 protein_coding protein_coding MGP_C3HHeJ_T0022744.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164702016 164728625 + MGP_C3HHeJ_P0022744 Ankrd45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0022745.1 MGP_C3HHeJ_G0016416.1 mouse_genomes_project 1 164702033 164725197 + MGP_C3HHeJ_P0022745 Ankrd45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000343.1 MGP_C3HHeJ_G0000293.1 mouse_genomes_project 1 7603128 7605879 - TEC TEC MGP_C3HHeJ_T0005821.1 MGP_C3HHeJ_G0004872.1 mouse_genomes_project 1 127630884 127633705 + Gm28706 lincRNA lincRNA MGP_C3HHeJ_T0005606.1 MGP_C3HHeJ_G0004711.1 mouse_genomes_project 1 34228339 34232665 - Gm37146 lincRNA lincRNA MGP_C3HHeJ_T0005765.1 MGP_C3HHeJ_G0004828.1 mouse_genomes_project 1 93083069 93086647 + Gm26720 lincRNA lincRNA MGP_C3HHeJ_T0011950.1 MGP_C3HHeJ_G0010054.1 mouse_genomes_project 1 57103927 57104809 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0022376.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155564683 155587897 - MGP_C3HHeJ_P0022376 Tsen15 protein_coding protein_coding MGP_C3HHeJ_T0022377.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155564786 155566031 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0022378.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155565153 155587807 - MGP_C3HHeJ_P0022378 Tsen15 protein_coding protein_coding MGP_C3HHeJ_T0022379.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155565160 155578250 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0022380.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155565723 155578597 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0022381.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155577849 155587903 - Tsen15 protein_coding processed_transcript MGP_C3HHeJ_T0022382.1 MGP_C3HHeJ_G0016353.1 mouse_genomes_project 1 155578707 155587835 - Tsen15 protein_coding retained_intron MGP_C3HHeJ_T0011889.1 MGP_C3HHeJ_G0009993.1 mouse_genomes_project 1 38818953 38819638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019769.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58299482 58637683 - MGP_C3HHeJ_P0019769 Als2cr12 protein_coding protein_coding MGP_C3HHeJ_T0019770.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58299482 58360538 - MGP_C3HHeJ_P0019770 Als2cr12 protein_coding protein_coding MGP_C3HHeJ_T0019771.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58299725 58360538 - MGP_C3HHeJ_P0019771 Als2cr12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019772.1 MGP_C3HHeJ_G0015826.1 mouse_genomes_project 1 58326101 58357501 - Als2cr12 protein_coding retained_intron MGP_C3HHeJ_T0023342.1 MGP_C3HHeJ_G0016552.1 mouse_genomes_project 1 176790771 176793987 + MGP_C3HHeJ_P0023342 Slamf9 protein_coding protein_coding MGP_C3HHeJ_T0020623.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960270 81227024 - MGP_C3HHeJ_P0020623 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020624.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960385 81059276 - MGP_C3HHeJ_P0020624 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020625.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960750 81137075 - MGP_C3HHeJ_P0020625 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020626.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960838 80989013 - MGP_C3HHeJ_P0020626 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020627.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80960910 81137041 - MGP_C3HHeJ_P0020627 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020628.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80962088 80965537 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020629.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 80979669 80981549 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020630.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81048380 81227103 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020631.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81052082 81173655 - MGP_C3HHeJ_P0020631 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020632.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81059044 81137058 - MGP_C3HHeJ_P0020632 Dock10 protein_coding protein_coding MGP_C3HHeJ_T0020633.1 MGP_C3HHeJ_G0015979.1 mouse_genomes_project 1 81116175 81227063 - Dock10 protein_coding retained_intron MGP_C3HHeJ_T0020690.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84635396 84884127 - MGP_C3HHeJ_P0020690 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020691.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84636331 84936666 - MGP_C3HHeJ_P0020691 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020692.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84637026 84653137 - Pid1 protein_coding processed_transcript MGP_C3HHeJ_T0020693.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84680286 84883905 - MGP_C3HHeJ_P0020693 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020694.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84713232 84968998 - MGP_C3HHeJ_P0020694 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020695.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84720770 84944281 - MGP_C3HHeJ_P0020695 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020696.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84761072 84884093 - MGP_C3HHeJ_P0020696 Pid1 protein_coding protein_coding MGP_C3HHeJ_T0020697.1 MGP_C3HHeJ_G0015994.1 mouse_genomes_project 1 84882674 84884105 - Pid1 protein_coding retained_intron MGP_C3HHeJ_T0000708.1 MGP_C3HHeJ_G0000653.1 mouse_genomes_project 1 172474917 172475526 - TEC TEC MGP_C3HHeJ_T0020964.1 MGP_C3HHeJ_G0016052.1 mouse_genomes_project 1 89379870 89393372 + MGP_C3HHeJ_P0020964 Spp2 protein_coding protein_coding MGP_C3HHeJ_T0020965.1 MGP_C3HHeJ_G0016052.1 mouse_genomes_project 1 89380126 89399124 + MGP_C3HHeJ_P0020965 Spp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011789.1 MGP_C3HHeJ_G0009893.1 mouse_genomes_project 1 6660018 6661028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000416.1 MGP_C3HHeJ_G0000363.1 mouse_genomes_project 1 35221790 35225471 - TEC TEC MGP_C3HHeJ_T0023114.1 MGP_C3HHeJ_G0016503.1 mouse_genomes_project 1 174894076 174905360 + MGP_C3HHeJ_P0023114 Fcgr4 protein_coding protein_coding MGP_C3HHeJ_T0098321.1 MGP_C3HHeJ_G0036532.1 mouse_genomes_project 1 90566694 90574532 + Gm28499 sense_intronic sense_intronic MGP_C3HHeJ_T0023566.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184595374 184619907 + MGP_C3HHeJ_P0023566 Sccpdh protein_coding protein_coding MGP_C3HHeJ_T0023567.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184595374 184619907 + MGP_C3HHeJ_P0023567 Sccpdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023568.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184595424 184605553 + Sccpdh protein_coding retained_intron MGP_C3HHeJ_T0023569.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184612103 184619543 + MGP_C3HHeJ_P0023569 Sccpdh protein_coding protein_coding MGP_C3HHeJ_T0023570.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184612132 184617209 + MGP_C3HHeJ_P0023570 Sccpdh protein_coding protein_coding MGP_C3HHeJ_T0023571.1 MGP_C3HHeJ_G0016623.1 mouse_genomes_project 1 184616562 184619551 + Sccpdh protein_coding retained_intron MGP_C3HHeJ_T0020798.1 MGP_C3HHeJ_G0016013.1 mouse_genomes_project 1 87097371 87099283 - MGP_C3HHeJ_P0020798 Nmur1 protein_coding protein_coding MGP_C3HHeJ_T0000540.1 MGP_C3HHeJ_G0000487.1 mouse_genomes_project 1 96579409 96581947 + TEC TEC MGP_C3HHeJ_T0000497.1 MGP_C3HHeJ_G0000444.1 mouse_genomes_project 1 80579455 80581284 - TEC TEC MGP_C3HHeJ_T0005767.1 MGP_C3HHeJ_G0004830.1 mouse_genomes_project 1 93729509 93739424 + lincRNA lincRNA MGP_C3HHeJ_T0020800.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264623 87267412 + MGP_C3HHeJ_P0020800 protein_coding protein_coding MGP_C3HHeJ_T0020801.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264627 87267630 + protein_coding processed_transcript MGP_C3HHeJ_T0020802.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264693 87267951 + MGP_C3HHeJ_P0020802 protein_coding protein_coding MGP_C3HHeJ_T0020803.1 MGP_C3HHeJ_G0016015.1 mouse_genomes_project 1 87264791 87267897 + MGP_C3HHeJ_P0020803 protein_coding unknown_likely_coding MGP_C3HHeJ_T0011913.1 MGP_C3HHeJ_G0010017.1 mouse_genomes_project 1 44758533 44759607 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002875.1 MGP_C3HHeJ_G0002705.1 mouse_genomes_project 1 169561947 169562837 - Gm37469 antisense antisense MGP_C3HHeJ_T0021566.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113282 129043860 - MGP_C3HHeJ_P0021566 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021567.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113282 129043860 - MGP_C3HHeJ_P0021567 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021568.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113293 128711501 - MGP_C3HHeJ_P0021568 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021569.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128113965 128169819 - Nckap5 protein_coding processed_transcript MGP_C3HHeJ_T0021570.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128114387 128669244 - MGP_C3HHeJ_P0021570 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021571.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128114387 128666150 - MGP_C3HHeJ_P0021571 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021572.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128114604 128227287 - MGP_C3HHeJ_P0021572 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021573.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128232050 128239693 - Nckap5 protein_coding processed_transcript MGP_C3HHeJ_T0021574.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128439692 129044027 - MGP_C3HHeJ_P0021574 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021575.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128476810 128958349 - MGP_C3HHeJ_P0021575 Nckap5 protein_coding protein_coding MGP_C3HHeJ_T0021576.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128748274 128958337 - Nckap5 protein_coding retained_intron MGP_C3HHeJ_T0021577.1 MGP_C3HHeJ_G0016187.1 mouse_genomes_project 1 128750816 129043709 - Nckap5 protein_coding retained_intron MGP_C3HHeJ_T0101545.1 MGP_C3HHeJ_G0039511.1 mouse_genomes_project 1 18861361 18862473 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009393.1 MGP_C3HHeJ_G0007526.1 mouse_genomes_project 1 34776517 34776658 + miRNA miRNA MGP_C3HHeJ_T0000324.1 MGP_C3HHeJ_G0000274.1 mouse_genomes_project 1 553256 555313 - TEC TEC MGP_C3HHeJ_T0021875.1 MGP_C3HHeJ_G0016251.1 mouse_genomes_project 1 135787394 135801297 + MGP_C3HHeJ_P0021875 Golt1a protein_coding protein_coding MGP_C3HHeJ_T0021880.1 MGP_C3HHeJ_G0016251.1 mouse_genomes_project 1 135787484 135799321 + MGP_C3HHeJ_P0021880 Golt1a protein_coding protein_coding MGP_C3HHeJ_T0023060.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173806070 173946918 - MGP_C3HHeJ_P0023060 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023061.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173806071 173924010 - MGP_C3HHeJ_P0023061 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023062.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173811713 173946858 - MGP_C3HHeJ_P0023062 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023063.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173838584 173947086 - MGP_C3HHeJ_P0023063 Ddr2 protein_coding protein_coding MGP_C3HHeJ_T0023064.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173871109 173947119 - Ddr2 protein_coding retained_intron MGP_C3HHeJ_T0023065.1 MGP_C3HHeJ_G0016489.1 mouse_genomes_project 1 173918721 173933191 - Ddr2 protein_coding processed_transcript MGP_C3HHeJ_T0021976.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938709 136956652 + MGP_C3HHeJ_P0021976 Adipor1 protein_coding protein_coding MGP_C3HHeJ_T0021977.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938787 136956649 + MGP_C3HHeJ_P0021977 Adipor1 protein_coding protein_coding MGP_C3HHeJ_T0021978.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938802 136939272 + Adipor1 protein_coding processed_transcript MGP_C3HHeJ_T0021979.1 MGP_C3HHeJ_G0016276.1 mouse_genomes_project 1 136938895 136950230 + Adipor1 protein_coding retained_intron MGP_C3HHeJ_T0018746.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13450959 13451747 - Rpl7 protein_coding processed_transcript MGP_C3HHeJ_T0018747.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13450959 13454221 - MGP_C3HHeJ_P0018747 Rpl7 protein_coding protein_coding MGP_C3HHeJ_T0018748.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13450970 13453975 - Rpl7 protein_coding retained_intron MGP_C3HHeJ_T0018749.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13451192 13452421 - Rpl7 protein_coding retained_intron MGP_C3HHeJ_T0018750.1 MGP_C3HHeJ_G0015624.1 mouse_genomes_project 1 13452155 13453957 - Rpl7 protein_coding retained_intron MGP_C3HHeJ_T0020334.1 MGP_C3HHeJ_G0015929.1 mouse_genomes_project 1 75046412 75073768 + MGP_C3HHeJ_P0020334 Cyp27a1 protein_coding protein_coding MGP_C3HHeJ_T0020335.1 MGP_C3HHeJ_G0015929.1 mouse_genomes_project 1 75071226 75072592 + Cyp27a1 protein_coding retained_intron MGP_C3HHeJ_T0020336.1 MGP_C3HHeJ_G0015929.1 mouse_genomes_project 1 75072684 75073699 + Cyp27a1 protein_coding retained_intron MGP_C3HHeJ_T0012247.1 MGP_C3HHeJ_G0010351.1 mouse_genomes_project 1 186120357 186121494 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021382.1 MGP_C3HHeJ_G0016145.1 mouse_genomes_project 1 108869459 109019348 - MGP_C3HHeJ_P0021382 Serpinb3b protein_coding protein_coding MGP_C3HHeJ_T0021383.1 MGP_C3HHeJ_G0016145.1 mouse_genomes_project 1 108993031 109000196 - MGP_C3HHeJ_P0021383 Serpinb3b protein_coding protein_coding MGP_C3HHeJ_T0005751.1 MGP_C3HHeJ_G0004814.1 mouse_genomes_project 1 89857665 89866222 - Gm29337 lincRNA lincRNA MGP_C3HHeJ_T0021681.1 MGP_C3HHeJ_G0016210.1 mouse_genomes_project 1 133181950 133195790 + MGP_C3HHeJ_P0021681 Fcamr protein_coding protein_coding MGP_C3HHeJ_T0021682.1 MGP_C3HHeJ_G0016210.1 mouse_genomes_project 1 133181950 133195758 + MGP_C3HHeJ_P0021682 Fcamr protein_coding protein_coding MGP_C3HHeJ_T0022718.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164593233 164623057 - MGP_C3HHeJ_P0022718 Dars2 protein_coding protein_coding MGP_C3HHeJ_T0022719.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164593814 164623041 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022720.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164594123 164599590 - Dars2 protein_coding processed_transcript MGP_C3HHeJ_T0022721.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164594129 164623055 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022722.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164597630 164623006 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022723.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164615009 164616040 - Dars2 protein_coding retained_intron MGP_C3HHeJ_T0022724.1 MGP_C3HHeJ_G0016413.1 mouse_genomes_project 1 164615368 164623029 - Dars2 protein_coding processed_transcript MGP_C3HHeJ_T0019558.1 MGP_C3HHeJ_G0015785.1 mouse_genomes_project 1 52293930 52300370 + MGP_C3HHeJ_P0019558 Mstn protein_coding protein_coding MGP_C3HHeJ_T0019559.1 MGP_C3HHeJ_G0015785.1 mouse_genomes_project 1 52293947 52300336 + MGP_C3HHeJ_P0019559 Mstn protein_coding protein_coding MGP_C3HHeJ_T0011945.1 MGP_C3HHeJ_G0010049.1 mouse_genomes_project 1 54654430 54659177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023661.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185912761 185916557 + MGP_C3HHeJ_P0023661 Pycr2 protein_coding protein_coding MGP_C3HHeJ_T0023662.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185912777 185915088 + Pycr2 protein_coding retained_intron MGP_C3HHeJ_T0023663.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185912791 185916556 + Pycr2 protein_coding retained_intron MGP_C3HHeJ_T0023664.1 MGP_C3HHeJ_G0016639.1 mouse_genomes_project 1 185914383 185915371 + Pycr2 protein_coding retained_intron MGP_C3HHeJ_T0022838.1 MGP_C3HHeJ_G0016434.1 mouse_genomes_project 1 166552695 166582903 - MGP_C3HHeJ_P0022838 Fmo3 protein_coding protein_coding MGP_C3HHeJ_T0022839.1 MGP_C3HHeJ_G0016434.1 mouse_genomes_project 1 166563169 166582904 - Fmo3 protein_coding retained_intron MGP_C3HHeJ_T0002897.1 MGP_C3HHeJ_G0002723.1 mouse_genomes_project 1 183187821 183193118 - B230369F24Rik antisense antisense MGP_C3HHeJ_T0005876.1 MGP_C3HHeJ_G0004917.1 mouse_genomes_project 1 158335979 158383806 - Gm29282 lincRNA lincRNA MGP_C3HHeJ_T0023508.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181589371 + Sdccag8 protein_coding retained_intron MGP_C3HHeJ_T0023509.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181478814 + Sdccag8 protein_coding retained_intron MGP_C3HHeJ_T0023510.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181493003 + MGP_C3HHeJ_P0023510 Sdccag8 protein_coding protein_coding MGP_C3HHeJ_T0023511.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181655363 + MGP_C3HHeJ_P0023511 Sdccag8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023512.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447544 181655363 + MGP_C3HHeJ_P0023512 Sdccag8 protein_coding protein_coding MGP_C3HHeJ_T0023513.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181447873 181647621 + MGP_C3HHeJ_P0023513 Sdccag8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023514.1 MGP_C3HHeJ_G0016608.1 mouse_genomes_project 1 181632473 181655363 + Sdccag8 protein_coding processed_transcript MGP_C3HHeJ_T0023054.1 MGP_C3HHeJ_G0016487.1 mouse_genomes_project 1 173760343 173767805 + MGP_C3HHeJ_P0023054 Ccdc190 protein_coding protein_coding MGP_C3HHeJ_T0023055.1 MGP_C3HHeJ_G0016487.1 mouse_genomes_project 1 173761624 173767565 + MGP_C3HHeJ_P0023055 Ccdc190 protein_coding protein_coding MGP_C3HHeJ_T0021953.1 MGP_C3HHeJ_G0016271.1 mouse_genomes_project 1 136812750 136815310 + MGP_C3HHeJ_P0021953 Myog protein_coding protein_coding MGP_C3HHeJ_T0020832.1 MGP_C3HHeJ_G0016025.1 mouse_genomes_project 1 87994818 87995978 + Chrnd protein_coding retained_intron MGP_C3HHeJ_T0020833.1 MGP_C3HHeJ_G0016025.1 mouse_genomes_project 1 87994848 88005515 + MGP_C3HHeJ_P0020833 Chrnd protein_coding protein_coding MGP_C3HHeJ_T0020834.1 MGP_C3HHeJ_G0016025.1 mouse_genomes_project 1 87995055 88005514 + MGP_C3HHeJ_P0020834 Chrnd protein_coding protein_coding MGP_C3HHeJ_T0011979.1 MGP_C3HHeJ_G0010083.1 mouse_genomes_project 1 62931499 62931745 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011796.1 MGP_C3HHeJ_G0009900.1 mouse_genomes_project 1 8775382 8775644 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012128.1 MGP_C3HHeJ_G0010232.1 mouse_genomes_project 1 125424124 125424373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011890.1 MGP_C3HHeJ_G0009994.1 mouse_genomes_project 1 39353351 39353847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098326.1 MGP_C3HHeJ_G0036537.1 mouse_genomes_project 1 140639479 140640725 + Gm26930 sense_intronic sense_intronic MGP_C3HHeJ_T0005908.1 MGP_C3HHeJ_G0004941.1 mouse_genomes_project 1 169719961 169761503 + Gm26665 lincRNA lincRNA MGP_C3HHeJ_T0019307.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38782637 38787469 + Il1rl2 protein_coding retained_intron MGP_C3HHeJ_T0019308.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38782654 38830575 + MGP_C3HHeJ_P0019308 Il1rl2 protein_coding protein_coding MGP_C3HHeJ_T0019309.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38782717 38832666 + MGP_C3HHeJ_P0019309 Il1rl2 protein_coding protein_coding MGP_C3HHeJ_T0019310.1 MGP_C3HHeJ_G0015737.1 mouse_genomes_project 1 38783638 38787199 + MGP_C3HHeJ_P0019310 Il1rl2 protein_coding protein_coding MGP_C3HHeJ_T0005871.1 MGP_C3HHeJ_G0004914.1 mouse_genomes_project 1 157339905 157423908 - A830008E24Rik lincRNA lincRNA MGP_C3HHeJ_T0005872.1 MGP_C3HHeJ_G0004914.1 mouse_genomes_project 1 157350395 157425706 - A830008E24Rik lincRNA lincRNA MGP_C3HHeJ_T0012230.1 MGP_C3HHeJ_G0010334.1 mouse_genomes_project 1 175278488 175278824 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023343.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797200 176804972 + MGP_C3HHeJ_P0023343 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023344.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797610 176807029 + MGP_C3HHeJ_P0023344 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023345.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797617 176805009 + Igsf9 protein_coding processed_transcript MGP_C3HHeJ_T0023346.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797626 176814259 + MGP_C3HHeJ_P0023346 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023347.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797631 176805192 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023348.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797631 176806419 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023349.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797642 176814259 + MGP_C3HHeJ_P0023349 Igsf9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023350.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176797725 176814260 + MGP_C3HHeJ_P0023350 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023351.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176806474 176807368 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023352.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176807351 176810255 + MGP_C3HHeJ_P0023352 Igsf9 protein_coding protein_coding MGP_C3HHeJ_T0023353.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176809322 176811117 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023354.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176809349 176811143 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023355.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176810147 176811605 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0023356.1 MGP_C3HHeJ_G0016553.1 mouse_genomes_project 1 176813174 176813996 + Igsf9 protein_coding retained_intron MGP_C3HHeJ_T0101553.1 MGP_C3HHeJ_G0039519.1 mouse_genomes_project 1 65355572 65356252 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0021637.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130578300 130607332 - MGP_C3HHeJ_P0021637 Mcm6 protein_coding protein_coding MGP_C3HHeJ_T0021638.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130578303 130607315 - MGP_C3HHeJ_P0021638 Mcm6 protein_coding protein_coding MGP_C3HHeJ_T0021639.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130586107 130593344 - Mcm6 protein_coding retained_intron MGP_C3HHeJ_T0021640.1 MGP_C3HHeJ_G0016198.1 mouse_genomes_project 1 130587662 130590765 - Mcm6 protein_coding retained_intron MGP_C3HHeJ_T0002701.1 MGP_C3HHeJ_G0002572.1 mouse_genomes_project 1 15157586 15228001 - Gm28153 antisense antisense MGP_C3HHeJ_T0000389.1 MGP_C3HHeJ_G0000337.1 mouse_genomes_project 1 23479751 23483369 - TEC TEC MGP_C3HHeJ_T0022798.1 MGP_C3HHeJ_G0016427.1 mouse_genomes_project 1 166236757 166247232 + MGP_C3HHeJ_P0022798 Myoc protein_coding protein_coding MGP_C3HHeJ_T0011787.1 MGP_C3HHeJ_G0009891.1 mouse_genomes_project 1 6612507 6614692 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018933.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29160077 29259357 - MGP_C3HHeJ_P0018933 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0018934.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29166013 29259417 - MGP_C3HHeJ_P0018934 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0018935.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29166566 29259388 - MGP_C3HHeJ_P0018935 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0018938.1 MGP_C3HHeJ_G0015668.1 mouse_genomes_project 1 29240620 29259444 - MGP_C3HHeJ_P0018938 4931428L18Rik protein_coding protein_coding MGP_C3HHeJ_T0020724.1 MGP_C3HHeJ_G0015998.1 mouse_genomes_project 1 85524024 85552579 - MGP_C3HHeJ_P0020724 Slc16a14 protein_coding protein_coding MGP_C3HHeJ_T0020725.1 MGP_C3HHeJ_G0015998.1 mouse_genomes_project 1 85546940 85552302 - MGP_C3HHeJ_P0020725 Slc16a14 protein_coding protein_coding MGP_C3HHeJ_T0018738.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13152821 13195315 + MGP_C3HHeJ_P0018738 Terf1 protein_coding protein_coding MGP_C3HHeJ_T0018739.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13152832 13169000 + Terf1 protein_coding processed_transcript MGP_C3HHeJ_T0018740.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13152839 13194733 + MGP_C3HHeJ_P0018740 Terf1 protein_coding protein_coding MGP_C3HHeJ_T0018741.1 MGP_C3HHeJ_G0015621.1 mouse_genomes_project 1 13154817 13169088 + Terf1 protein_coding retained_intron MGP_C3HHeJ_T0016787.1 MGP_C3HHeJ_G0014866.1 mouse_genomes_project 1 90655626 90688972 - 4933400F21Rik processed_transcript antisense MGP_C3HHeJ_T0016788.1 MGP_C3HHeJ_G0014866.1 mouse_genomes_project 1 90682575 90688958 - 4933400F21Rik processed_transcript antisense MGP_C3HHeJ_T0016789.1 MGP_C3HHeJ_G0014866.1 mouse_genomes_project 1 90686173 90688952 - 4933400F21Rik processed_transcript retained_intron MGP_C3HHeJ_T0020570.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78811516 78882356 - MGP_C3HHeJ_P0020570 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020571.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78818611 78882394 - MGP_C3HHeJ_P0020571 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020572.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78818628 78882359 - MGP_C3HHeJ_P0020572 Farsb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020573.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78856503 78882356 - MGP_C3HHeJ_P0020573 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020574.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78864697 78882292 - Farsb protein_coding processed_transcript MGP_C3HHeJ_T0020575.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78866083 78882339 - MGP_C3HHeJ_P0020575 Farsb protein_coding protein_coding MGP_C3HHeJ_T0020576.1 MGP_C3HHeJ_G0015967.1 mouse_genomes_project 1 78871368 78882334 - Farsb protein_coding retained_intron MGP_C3HHeJ_T0002696.1 MGP_C3HHeJ_G0002569.1 mouse_genomes_project 1 14431036 14491424 + antisense antisense MGP_C3HHeJ_T0020951.1 MGP_C3HHeJ_G0016047.1 mouse_genomes_project 1 89104775 89105826 - MGP_C3HHeJ_P0020951 Dnajb3 protein_coding protein_coding MGP_C3HHeJ_T0005741.1 MGP_C3HHeJ_G0004805.1 mouse_genomes_project 1 86454422 86464685 + 9930111H07Rik lincRNA lincRNA MGP_C3HHeJ_T0000437.1 MGP_C3HHeJ_G0000384.1 mouse_genomes_project 1 50756913 50759284 - TEC TEC MGP_C3HHeJ_T0000718.1 MGP_C3HHeJ_G0000663.1 mouse_genomes_project 1 180995344 180998899 - TEC TEC MGP_C3HHeJ_T0018849.1 MGP_C3HHeJ_G0015651.1 mouse_genomes_project 1 18918875 18922076 + MGP_C3HHeJ_P0018849 Khdc1b protein_coding protein_coding MGP_C3HHeJ_T0098651.1 MGP_C3HHeJ_G0036845.1 mouse_genomes_project 1 134529831 134529947 + Gm26034 snRNA snRNA MGP_C3HHeJ_T0099850.1 MGP_C3HHeJ_G0038044.1 mouse_genomes_project 1 59454393 59454477 + Gm26293 snoRNA snoRNA MGP_C3HHeJ_T0012132.1 MGP_C3HHeJ_G0010236.1 mouse_genomes_project 1 127856472 127857101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000464.1 MGP_C3HHeJ_G0000411.1 mouse_genomes_project 1 61644188 61645108 + TEC TEC MGP_C3HHeJ_T0011937.1 MGP_C3HHeJ_G0010041.1 mouse_genomes_project 1 52109559 52110421 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0023305.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176450988 176497885 + MGP_C3HHeJ_P0023305 Dcaf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023306.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176450993 176492012 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023307.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451022 176498597 + MGP_C3HHeJ_P0023307 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0023308.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451044 176493238 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023309.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451046 176498556 + MGP_C3HHeJ_P0023309 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0023310.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451082 176499479 + MGP_C3HHeJ_P0023310 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0023311.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176451849 176493238 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023312.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176477986 176480231 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023313.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176478090 176496012 + MGP_C3HHeJ_P0023313 Dcaf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023314.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176482323 176486839 + Dcaf8 protein_coding retained_intron MGP_C3HHeJ_T0023315.1 MGP_C3HHeJ_G0016543.1 mouse_genomes_project 1 176490811 176500096 + MGP_C3HHeJ_P0023315 Dcaf8 protein_coding protein_coding MGP_C3HHeJ_T0000755.1 MGP_C3HHeJ_G0000698.1 mouse_genomes_project 1 192288962 192291261 - TEC TEC MGP_C3HHeJ_T0000394.1 MGP_C3HHeJ_G0000342.1 mouse_genomes_project 1 26419608 26421122 + TEC TEC MGP_C3HHeJ_T0000738.1 MGP_C3HHeJ_G0000682.1 mouse_genomes_project 1 186434271 186435582 + TEC TEC MGP_C3HHeJ_T0011808.1 MGP_C3HHeJ_G0009912.1 mouse_genomes_project 1 14153410 14155621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0019708.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715835 57717715 + Aox3 protein_coding retained_intron MGP_C3HHeJ_T0019709.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715841 57805342 + MGP_C3HHeJ_P0019709 Aox3 protein_coding protein_coding MGP_C3HHeJ_T0019710.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715843 57724811 + Aox3 protein_coding retained_intron MGP_C3HHeJ_T0019711.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57715891 57742630 + MGP_C3HHeJ_P0019711 Aox3 protein_coding protein_coding MGP_C3HHeJ_T0019712.1 MGP_C3HHeJ_G0015816.1 mouse_genomes_project 1 57773840 57776464 + Aox3 protein_coding retained_intron MGP_C3HHeJ_T0000585.1 MGP_C3HHeJ_G0000532.1 mouse_genomes_project 1 130383092 130385835 + TEC TEC MGP_C3HHeJ_T0023735.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187419985 187450078 - MGP_C3HHeJ_P0023735 Fbxo28 protein_coding protein_coding MGP_C3HHeJ_T0023736.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187422071 187425271 - Fbxo28 protein_coding retained_intron MGP_C3HHeJ_T0023737.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187423346 187450060 - MGP_C3HHeJ_P0023737 Fbxo28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023738.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187423874 187450031 - MGP_C3HHeJ_P0023738 Fbxo28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023739.1 MGP_C3HHeJ_G0016654.1 mouse_genomes_project 1 187424127 187450089 - MGP_C3HHeJ_P0023739 Fbxo28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005868.1 MGP_C3HHeJ_G0004912.1 mouse_genomes_project 1 157303427 157306249 - Gm29291 lincRNA lincRNA MGP_C3HHeJ_T0005869.1 MGP_C3HHeJ_G0004912.1 mouse_genomes_project 1 157303583 157306253 - Gm29291 lincRNA lincRNA MGP_C3HHeJ_T0009401.1 MGP_C3HHeJ_G0007534.1 mouse_genomes_project 1 52746053 52746178 - Gm25240 miRNA miRNA MGP_C3HHeJ_T0021277.1 MGP_C3HHeJ_G0016119.1 mouse_genomes_project 1 95272492 95286661 - MGP_C3HHeJ_P0021277 Pdcd1 protein_coding protein_coding MGP_C3HHeJ_T0005897.1 MGP_C3HHeJ_G0004933.1 mouse_genomes_project 1 168285122 168293504 + lincRNA lincRNA MGP_C3HHeJ_T0019270.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37973003 37987424 + MGP_C3HHeJ_P0019270 Cnot11 protein_coding protein_coding MGP_C3HHeJ_T0019271.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37973813 37987408 + MGP_C3HHeJ_P0019271 Cnot11 protein_coding protein_coding MGP_C3HHeJ_T0019272.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37976256 37987002 + Cnot11 protein_coding retained_intron MGP_C3HHeJ_T0019273.1 MGP_C3HHeJ_G0015729.1 mouse_genomes_project 1 37978051 37985920 + MGP_C3HHeJ_P0019273 Cnot11 protein_coding protein_coding MGP_C3HHeJ_T0012268.1 MGP_C3HHeJ_G0010372.1 mouse_genomes_project 1 196886993 196887458 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098628.1 MGP_C3HHeJ_G0036822.1 mouse_genomes_project 1 72471933 72472124 + Gm24497 snRNA snRNA MGP_C3HHeJ_T0099837.1 MGP_C3HHeJ_G0038031.1 mouse_genomes_project 1 37955181 37955396 + Gm24826 snoRNA snoRNA MGP_C3HHeJ_T0099844.1 MGP_C3HHeJ_G0038038.1 mouse_genomes_project 1 51164526 51164648 - Gm27607 snoRNA snoRNA MGP_C3HHeJ_T0000357.1 MGP_C3HHeJ_G0000307.1 mouse_genomes_project 1 11528439 11528878 - TEC TEC MGP_C3HHeJ_T0020057.1 MGP_C3HHeJ_G0015879.1 mouse_genomes_project 1 65219773 65285271 + MGP_C3HHeJ_P0020057 Pth2r protein_coding protein_coding MGP_C3HHeJ_T0020058.1 MGP_C3HHeJ_G0015879.1 mouse_genomes_project 1 65250720 65329086 + MGP_C3HHeJ_P0020058 Pth2r protein_coding protein_coding MGP_C3HHeJ_T0000435.1 MGP_C3HHeJ_G0000382.1 mouse_genomes_project 1 46528665 46530608 - TEC TEC MGP_C3HHeJ_T0000690.1 MGP_C3HHeJ_G0000635.1 mouse_genomes_project 1 164534881 164536049 + TEC TEC MGP_C3HHeJ_T0022675.1 MGP_C3HHeJ_G0016406.1 mouse_genomes_project 1 163564130 163649776 - MGP_C3HHeJ_P0022675 Tnn protein_coding protein_coding MGP_C3HHeJ_T0022676.1 MGP_C3HHeJ_G0016406.1 mouse_genomes_project 1 163565073 163644084 - MGP_C3HHeJ_P0022676 Tnn protein_coding protein_coding MGP_C3HHeJ_T0022677.1 MGP_C3HHeJ_G0016406.1 mouse_genomes_project 1 163565136 163644051 - MGP_C3HHeJ_P0022677 Tnn protein_coding unknown_likely_coding MGP_C3HHeJ_T0000650.1 MGP_C3HHeJ_G0000595.1 mouse_genomes_project 1 154621565 154624000 + TEC TEC MGP_C3HHeJ_T0098262.1 MGP_C3HHeJ_G0036474.1 mouse_genomes_project 1 129557144 129557273 + Gm23370 scaRNA scaRNA MGP_C3HHeJ_T0021410.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113737050 113743116 - Dsel protein_coding processed_transcript MGP_C3HHeJ_T0021411.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113737054 113743266 - MGP_C3HHeJ_P0021411 Dsel protein_coding protein_coding MGP_C3HHeJ_T0021412.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113741671 113743231 - Dsel protein_coding processed_transcript MGP_C3HHeJ_T0021413.1 MGP_C3HHeJ_G0016154.1 mouse_genomes_project 1 113742443 113743228 - Dsel protein_coding processed_transcript MGP_C3HHeJ_T0012220.1 MGP_C3HHeJ_G0010324.1 mouse_genomes_project 1 169767224 169767577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000623.1 MGP_C3HHeJ_G0000568.1 mouse_genomes_project 1 140658697 140663933 + TEC TEC MGP_C3HHeJ_T0012179.1 MGP_C3HHeJ_G0010283.1 mouse_genomes_project 1 153133378 153135443 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0021318.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99775203 99872593 + MGP_C3HHeJ_P0021318 Slco6d1 protein_coding protein_coding MGP_C3HHeJ_T0021319.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99775206 99880179 + MGP_C3HHeJ_P0021319 Slco6d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021320.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99775233 99872460 + MGP_C3HHeJ_P0021320 Slco6d1 protein_coding protein_coding MGP_C3HHeJ_T0021321.1 MGP_C3HHeJ_G0016129.1 mouse_genomes_project 1 99863079 99872596 + Slco6d1 protein_coding processed_transcript MGP_C3HHeJ_T0000392.1 MGP_C3HHeJ_G0000340.1 mouse_genomes_project 1 23507097 23507427 - TEC TEC MGP_C3HHeJ_T0000776.1 MGP_C3HHeJ_G0000718.1 mouse_genomes_project 1 200227719 200228251 + TEC TEC MGP_C3HHeJ_T0011150.1 MGP_C3HHeJ_G0009283.1 mouse_genomes_project 1 49394385 49394517 - Gm27330 misc_RNA misc_RNA MGP_C3HHeJ_T0002771.1 MGP_C3HHeJ_G0002624.1 mouse_genomes_project 1 75245476 75250773 + Gm15841 antisense antisense MGP_C3HHeJ_T0000476.1 MGP_C3HHeJ_G0000423.1 mouse_genomes_project 1 67991860 67994161 + TEC TEC MGP_C3HHeJ_T0020487.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75664168 75721717 + MGP_C3HHeJ_P0020487 Speg protein_coding protein_coding MGP_C3HHeJ_T0020488.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75670979 75693360 + MGP_C3HHeJ_P0020488 Speg protein_coding protein_coding MGP_C3HHeJ_T0020489.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75670979 75677141 + MGP_C3HHeJ_P0020489 Speg protein_coding protein_coding MGP_C3HHeJ_T0020490.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75670991 75672249 + Speg protein_coding retained_intron MGP_C3HHeJ_T0020491.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75671003 75676691 + MGP_C3HHeJ_P0020491 Speg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020492.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75673403 75676744 + Speg protein_coding retained_intron MGP_C3HHeJ_T0020493.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75673531 75680719 + MGP_C3HHeJ_P0020493 Speg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020494.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75674215 75677900 + Speg protein_coding processed_transcript MGP_C3HHeJ_T0020495.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75674313 75721700 + MGP_C3HHeJ_P0020495 Speg protein_coding protein_coding MGP_C3HHeJ_T0020496.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75688885 75692787 + MGP_C3HHeJ_P0020496 Speg protein_coding protein_coding MGP_C3HHeJ_T0020497.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75689321 75693167 + MGP_C3HHeJ_P0020497 Speg protein_coding protein_coding MGP_C3HHeJ_T0020498.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75689435 75693359 + MGP_C3HHeJ_P0020498 Speg protein_coding protein_coding MGP_C3HHeJ_T0020499.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75689810 75693004 + MGP_C3HHeJ_P0020499 Speg protein_coding protein_coding MGP_C3HHeJ_T0020500.1 MGP_C3HHeJ_G0015955.1 mouse_genomes_project 1 75712248 75717019 + Speg protein_coding retained_intron MGP_C3HHeJ_T0023977.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196745513 196796707 - MGP_C3HHeJ_P0023977 Ppp2r5a protein_coding protein_coding MGP_C3HHeJ_T0023978.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196751250 196752911 - Ppp2r5a protein_coding retained_intron MGP_C3HHeJ_T0023979.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196752779 196786142 - Ppp2r5a protein_coding processed_transcript MGP_C3HHeJ_T0023980.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196753405 196767487 - MGP_C3HHeJ_P0023980 Ppp2r5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023981.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196758149 196767476 - Ppp2r5a protein_coding retained_intron MGP_C3HHeJ_T0023982.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196772491 196799097 - Ppp2r5a protein_coding processed_transcript MGP_C3HHeJ_T0023983.1 MGP_C3HHeJ_G0016705.1 mouse_genomes_project 1 196798453 196802864 - Ppp2r5a protein_coding retained_intron MGP_C3HHeJ_T0020547.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842107 75843319 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020548.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842111 75857953 + MGP_C3HHeJ_P0020548 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020549.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842273 75843850 + MGP_C3HHeJ_P0020549 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020550.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842307 75854668 + MGP_C3HHeJ_P0020550 Slc4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020551.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842338 75843556 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020552.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842344 75843823 + MGP_C3HHeJ_P0020552 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020553.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842455 75856660 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020554.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75842467 75843346 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020555.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75845410 75847194 + MGP_C3HHeJ_P0020555 Slc4a3 protein_coding protein_coding MGP_C3HHeJ_T0020556.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75845579 75846941 + Slc4a3 protein_coding retained_intron MGP_C3HHeJ_T0020557.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75846406 75850952 + MGP_C3HHeJ_P0020557 Slc4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0020558.1 MGP_C3HHeJ_G0015963.1 mouse_genomes_project 1 75847520 75849544 + MGP_C3HHeJ_P0020558 Slc4a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023485.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180558009 180891852 - MGP_C3HHeJ_P0023485 Pld5 protein_coding protein_coding MGP_C3HHeJ_T0023486.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180558110 180891866 - MGP_C3HHeJ_P0023486 Pld5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023487.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180559861 180828263 - MGP_C3HHeJ_P0023487 Pld5 protein_coding protein_coding MGP_C3HHeJ_T0023489.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180592578 180891829 - Pld5 protein_coding retained_intron MGP_C3HHeJ_T0023490.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180643626 180828162 - Pld5 protein_coding retained_intron MGP_C3HHeJ_T0023491.1 MGP_C3HHeJ_G0016605.1 mouse_genomes_project 1 180877313 180891828 - MGP_C3HHeJ_P0023491 Pld5 protein_coding protein_coding MGP_C3HHeJ_T0000556.1 MGP_C3HHeJ_G0000503.1 mouse_genomes_project 1 112780218 112785828 - TEC TEC MGP_C3HHeJ_T0098334.1 MGP_C3HHeJ_G0036545.1 mouse_genomes_project 1 168923109 168929294 - Gm38190 sense_intronic sense_intronic MGP_C3HHeJ_T0022383.1 MGP_C3HHeJ_G0016354.1 mouse_genomes_project 1 155600732 155709740 + MGP_C3HHeJ_P0022383 Colgalt2 protein_coding protein_coding MGP_C3HHeJ_T0022384.1 MGP_C3HHeJ_G0016354.1 mouse_genomes_project 1 155600732 155708863 + MGP_C3HHeJ_P0022384 Colgalt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005601.1 MGP_C3HHeJ_G0004707.1 mouse_genomes_project 1 32665948 32674868 - 4930568A12Rik lincRNA lincRNA MGP_C3HHeJ_T0005602.1 MGP_C3HHeJ_G0004707.1 mouse_genomes_project 1 32670238 32675190 - 4930568A12Rik lincRNA lincRNA MGP_C3HHeJ_T0021328.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107160362 107306579 - MGP_C3HHeJ_P0021328 Pign protein_coding protein_coding MGP_C3HHeJ_T0021329.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107160366 107311284 - MGP_C3HHeJ_P0021329 Pign protein_coding protein_coding MGP_C3HHeJ_T0021330.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107163109 107209536 - Pign protein_coding processed_transcript MGP_C3HHeJ_T0021331.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107192589 107311265 - MGP_C3HHeJ_P0021331 Pign protein_coding protein_coding MGP_C3HHeJ_T0021332.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107198791 107311284 - MGP_C3HHeJ_P0021332 Pign protein_coding protein_coding MGP_C3HHeJ_T0021333.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107294186 107311299 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021334.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107294186 107311298 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021335.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107294341 107297214 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021336.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107305829 107311295 - Pign protein_coding retained_intron MGP_C3HHeJ_T0021337.1 MGP_C3HHeJ_G0016133.1 mouse_genomes_project 1 107306758 107311294 - Pign protein_coding retained_intron MGP_C3HHeJ_T0019300.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38536406 38575034 + MGP_C3HHeJ_P0019300 Il1r2 protein_coding protein_coding MGP_C3HHeJ_T0019301.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38547598 38591062 + MGP_C3HHeJ_P0019301 Il1r2 protein_coding protein_coding MGP_C3HHeJ_T0019302.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38547692 38591050 + MGP_C3HHeJ_P0019302 Il1r2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019303.1 MGP_C3HHeJ_G0015735.1 mouse_genomes_project 1 38548884 38565309 + MGP_C3HHeJ_P0019303 Il1r2 protein_coding protein_coding MGP_C3HHeJ_T0005590.1 MGP_C3HHeJ_G0004697.1 mouse_genomes_project 1 21173436 21197066 + Gm28822 lincRNA lincRNA MGP_C3HHeJ_T0021498.1 MGP_C3HHeJ_G0016170.1 mouse_genomes_project 1 122034454 122097477 + MGP_C3HHeJ_P0021498 Sctr protein_coding protein_coding MGP_C3HHeJ_T0021499.1 MGP_C3HHeJ_G0016170.1 mouse_genomes_project 1 122034594 122097475 + MGP_C3HHeJ_P0021499 Sctr protein_coding protein_coding MGP_C3HHeJ_T0019968.1 MGP_C3HHeJ_G0015857.1 mouse_genomes_project 1 63042064 63076506 - MGP_C3HHeJ_P0019968 Gpr1 protein_coding protein_coding MGP_C3HHeJ_T0019969.1 MGP_C3HHeJ_G0015857.1 mouse_genomes_project 1 63070662 63076186 - Gpr1 protein_coding processed_transcript MGP_C3HHeJ_T0002922.1 MGP_C3HHeJ_G0002745.1 mouse_genomes_project 1 195505628 195556097 + Prox1os antisense antisense MGP_C3HHeJ_T0000356.1 MGP_C3HHeJ_G0000306.1 mouse_genomes_project 1 11371177 11374782 - TEC TEC MGP_C3HHeJ_T0005605.1 MGP_C3HHeJ_G0004710.1 mouse_genomes_project 1 34119082 34120343 + 1110002O04Rik lincRNA lincRNA MGP_C3HHeJ_T0000567.1 MGP_C3HHeJ_G0000514.1 mouse_genomes_project 1 125510774 125514284 - TEC TEC MGP_C3HHeJ_T0002724.1 MGP_C3HHeJ_G0002591.1 mouse_genomes_project 1 37277465 37280873 + Gm37707 antisense antisense MGP_C3HHeJ_T0005783.1 MGP_C3HHeJ_G0004843.1 mouse_genomes_project 1 103400690 103402824 - Gm28187 lincRNA lincRNA MGP_C3HHeJ_T0018872.1 MGP_C3HHeJ_G0015656.1 mouse_genomes_project 1 21382746 21435124 + MGP_C3HHeJ_P0018872 B3gat2 protein_coding protein_coding MGP_C3HHeJ_T0018873.1 MGP_C3HHeJ_G0015656.1 mouse_genomes_project 1 21383370 21465434 + MGP_C3HHeJ_P0018873 B3gat2 protein_coding protein_coding MGP_C3HHeJ_T0018751.1 MGP_C3HHeJ_G0015625.1 mouse_genomes_project 1 13456966 13484767 + MGP_C3HHeJ_P0018751 Rdh10 protein_coding protein_coding MGP_C3HHeJ_T0018752.1 MGP_C3HHeJ_G0015625.1 mouse_genomes_project 1 13481678 13483723 + Rdh10 protein_coding retained_intron MGP_C3HHeJ_T0005764.1 MGP_C3HHeJ_G0004827.1 mouse_genomes_project 1 92690580 92702801 + Gm28380 lincRNA lincRNA MGP_C3HHeJ_T0005613.1 MGP_C3HHeJ_G0004717.1 mouse_genomes_project 1 36504629 36532370 + Gm5099 lincRNA lincRNA MGP_C3HHeJ_T0098644.1 MGP_C3HHeJ_G0036838.1 mouse_genomes_project 1 121554018 121554122 + Gm25322 snRNA snRNA MGP_C3HHeJ_T0000636.1 MGP_C3HHeJ_G0000581.1 mouse_genomes_project 1 144303056 144306166 - TEC TEC MGP_C3HHeJ_T0019311.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38902618 38921321 + MGP_C3HHeJ_P0019311 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019312.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38911177 38916013 + MGP_C3HHeJ_P0019312 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019313.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38914232 38936443 + MGP_C3HHeJ_P0019313 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019314.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38914381 38922743 + MGP_C3HHeJ_P0019314 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0019315.1 MGP_C3HHeJ_G0015738.1 mouse_genomes_project 1 38915233 38936424 + MGP_C3HHeJ_P0019315 Il1rl1 protein_coding protein_coding MGP_C3HHeJ_T0002808.1 MGP_C3HHeJ_G0002654.1 mouse_genomes_project 1 123547695 123551603 - Gm15392 antisense antisense MGP_C3HHeJ_T0012070.1 MGP_C3HHeJ_G0010174.1 mouse_genomes_project 1 103986342 103986609 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012173.1 MGP_C3HHeJ_G0010277.1 mouse_genomes_project 1 151709049 151709839 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005817.1 MGP_C3HHeJ_G0004868.1 mouse_genomes_project 1 123404161 123409178 - 2210011K15Rik lincRNA lincRNA MGP_C3HHeJ_T0000341.1 MGP_C3HHeJ_G0000291.1 mouse_genomes_project 1 7197086 7198006 - TEC TEC MGP_C3HHeJ_T0000463.1 MGP_C3HHeJ_G0000410.1 mouse_genomes_project 1 61536353 61537718 + TEC TEC MGP_C3HHeJ_T0005931.1 MGP_C3HHeJ_G0004962.1 mouse_genomes_project 1 185797474 185805065 + Gm17275 lincRNA lincRNA MGP_C3HHeJ_T0000716.1 MGP_C3HHeJ_G0000661.1 mouse_genomes_project 1 180632568 180634212 - TEC TEC MGP_C3HHeJ_T0098625.1 MGP_C3HHeJ_G0036819.1 mouse_genomes_project 1 70117048 70117174 - Gm23879 snRNA snRNA MGP_C3HHeJ_T0000618.1 MGP_C3HHeJ_G0000564.1 mouse_genomes_project 1 140615052 140618926 + TEC TEC MGP_C3HHeJ_T0002888.1 MGP_C3HHeJ_G0002715.1 mouse_genomes_project 1 176199964 176209090 - Gm37065 antisense antisense MGP_C3HHeJ_T0002697.1 MGP_C3HHeJ_G0002570.1 mouse_genomes_project 1 15031169 15060101 - Gm28154 antisense antisense MGP_C3HHeJ_T0012196.1 MGP_C3HHeJ_G0010300.1 mouse_genomes_project 1 159217228 159217534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0020254.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690060 74702845 + MGP_C3HHeJ_P0020254 Slc11a1 protein_coding protein_coding MGP_C3HHeJ_T0020255.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690068 74703142 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020256.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690068 74703154 + MGP_C3HHeJ_P0020256 Slc11a1 protein_coding protein_coding MGP_C3HHeJ_T0020257.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690090 74703141 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020258.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690118 74698751 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020259.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74690437 74691756 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020260.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74691522 74694716 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020261.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74698575 74701096 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020262.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74699956 74700757 + Slc11a1 protein_coding retained_intron MGP_C3HHeJ_T0020263.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74700263 74701096 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0020264.1 MGP_C3HHeJ_G0015918.1 mouse_genomes_project 1 74700522 74702287 + Slc11a1 protein_coding processed_transcript MGP_C3HHeJ_T0000766.1 MGP_C3HHeJ_G0000709.1 mouse_genomes_project 1 197520013 197520146 + TEC TEC MGP_C3HHeJ_T0021183.1 MGP_C3HHeJ_G0016102.1 mouse_genomes_project 1 94337340 94399874 + MGP_C3HHeJ_P0021183 Crocc2 protein_coding protein_coding MGP_C3HHeJ_T0021184.1 MGP_C3HHeJ_G0016102.1 mouse_genomes_project 1 94348626 94397658 + MGP_C3HHeJ_P0021184 Crocc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018721.1 MGP_C3HHeJ_G0015616.1 mouse_genomes_project 1 10911121 10949636 + MGP_C3HHeJ_P0018721 Xkr9 protein_coding protein_coding MGP_C3HHeJ_T0012073.1 MGP_C3HHeJ_G0010177.1 mouse_genomes_project 1 106113158 106114226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005789.1 MGP_C3HHeJ_G0004848.1 mouse_genomes_project 1 109142171 109144383 - Gm15391 lincRNA lincRNA MGP_C3HHeJ_T0023371.1 MGP_C3HHeJ_G0016557.1 mouse_genomes_project 1 176901418 176910189 - MGP_C3HHeJ_P0023371 Slamf8 protein_coding protein_coding MGP_C3HHeJ_T0023372.1 MGP_C3HHeJ_G0016557.1 mouse_genomes_project 1 176908599 176910070 - Slamf8 protein_coding retained_intron MGP_C3HHeJ_T0011828.1 MGP_C3HHeJ_G0009932.1 mouse_genomes_project 1 19806256 19806703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018868.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20946115 20964462 - MGP_C3HHeJ_P0018868 Ogfrl1 protein_coding protein_coding MGP_C3HHeJ_T0018869.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20949397 20962058 - Ogfrl1 protein_coding retained_intron MGP_C3HHeJ_T0018870.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20951535 20979809 - MGP_C3HHeJ_P0018870 Ogfrl1 protein_coding protein_coding MGP_C3HHeJ_T0018871.1 MGP_C3HHeJ_G0015655.1 mouse_genomes_project 1 20972920 20980040 - Ogfrl1 protein_coding processed_transcript MGP_C3HHeJ_T0002799.1 MGP_C3HHeJ_G0002649.1 mouse_genomes_project 1 106533616 106534515 - Gm15699 antisense antisense MGP_C3HHeJ_T0021716.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133651628 133662413 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021717.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133651882 133678545 - MGP_C3HHeJ_P0021717 Ikbke protein_coding protein_coding MGP_C3HHeJ_T0021718.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133651887 133675404 - MGP_C3HHeJ_P0021718 Ikbke protein_coding protein_coding MGP_C3HHeJ_T0021719.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133656305 133663570 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021720.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133660624 133667826 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021721.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133668182 133669823 - Ikbke protein_coding retained_intron MGP_C3HHeJ_T0021722.1 MGP_C3HHeJ_G0016221.1 mouse_genomes_project 1 133671072 133675166 - MGP_C3HHeJ_P0021722 Ikbke protein_coding protein_coding MGP_C3HHeJ_T0011896.1 MGP_C3HHeJ_G0010000.1 mouse_genomes_project 1 42556361 42557177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012091.1 MGP_C3HHeJ_G0010195.1 mouse_genomes_project 1 113250722 113251503 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005784.1 MGP_C3HHeJ_G0004844.1 mouse_genomes_project 1 106732676 106744848 + Gm29012 lincRNA lincRNA MGP_C3HHeJ_T0012166.1 MGP_C3HHeJ_G0010270.1 mouse_genomes_project 1 147886175 147887319 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099836.1 MGP_C3HHeJ_G0038030.1 mouse_genomes_project 1 33390836 33390965 - Gm25096 snoRNA snoRNA MGP_C3HHeJ_T0023150.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137086 175138411 + MGP_C3HHeJ_P0023150 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023151.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137114 175138410 + MGP_C3HHeJ_P0023151 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023152.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137116 175138405 + MGP_C3HHeJ_P0023152 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023153.1 MGP_C3HHeJ_G0016511.1 mouse_genomes_project 1 175137123 175138369 + MGP_C3HHeJ_P0023153 Apoa2 protein_coding protein_coding MGP_C3HHeJ_T0023704.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186891615 186924684 - MGP_C3HHeJ_P0023704 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023705.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186891636 186896799 - Lbr protein_coding retained_intron MGP_C3HHeJ_T0023706.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186896151 186905789 - MGP_C3HHeJ_P0023706 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023707.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186897830 186906057 - Lbr protein_coding retained_intron MGP_C3HHeJ_T0023708.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186917401 186925351 - MGP_C3HHeJ_P0023708 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023709.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186917430 186924666 - MGP_C3HHeJ_P0023709 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023710.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186917581 186925164 - MGP_C3HHeJ_P0023710 Lbr protein_coding protein_coding MGP_C3HHeJ_T0023711.1 MGP_C3HHeJ_G0016650.1 mouse_genomes_project 1 186920774 186924631 - MGP_C3HHeJ_P0023711 Lbr protein_coding protein_coding MGP_C3HHeJ_T0099853.1 MGP_C3HHeJ_G0038047.1 mouse_genomes_project 1 62878281 62878395 + Gm24942 snoRNA snoRNA MGP_C3HHeJ_T0005688.1 MGP_C3HHeJ_G0004767.1 mouse_genomes_project 1 64099964 64216343 - Gm28981 lincRNA lincRNA MGP_C3HHeJ_T0018538.1 MGP_C3HHeJ_G0015589.1 mouse_genomes_project 1 2990552 2994244 - MGP_C3HHeJ_P0018538 Npbwr1 protein_coding protein_coding MGP_C3HHeJ_T0005609.1 MGP_C3HHeJ_G0004713.1 mouse_genomes_project 1 34261498 34262320 + 4930535G08Rik lincRNA lincRNA MGP_C3HHeJ_T0000721.1 MGP_C3HHeJ_G0000666.1 mouse_genomes_project 1 181607271 181609717 + TEC TEC MGP_C3HHeJ_T0024001.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197246173 197257649 + MGP_C3HHeJ_P0024001 Nek2 protein_coding protein_coding MGP_C3HHeJ_T0024002.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197246239 197253069 + Nek2 protein_coding retained_intron MGP_C3HHeJ_T0024003.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197246911 197250600 + Nek2 protein_coding retained_intron MGP_C3HHeJ_T0024004.1 MGP_C3HHeJ_G0016709.1 mouse_genomes_project 1 197251922 197254765 + Nek2 protein_coding processed_transcript MGP_C3HHeJ_T0019830.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59273341 59394729 + MGP_C3HHeJ_P0019830 Gm973 protein_coding protein_coding MGP_C3HHeJ_T0019831.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59282145 59284823 + MGP_C3HHeJ_P0019831 Gm973 protein_coding protein_coding MGP_C3HHeJ_T0019832.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59282509 59355857 + MGP_C3HHeJ_P0019832 Gm973 protein_coding unknown_likely_coding MGP_C3HHeJ_T0019833.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59302314 59316521 + Gm973 protein_coding retained_intron MGP_C3HHeJ_T0019834.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59306807 59321941 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019835.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59318234 59325772 + Gm973 protein_coding retained_intron MGP_C3HHeJ_T0019837.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59365566 59387050 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019838.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59365600 59389092 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019839.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59378202 59387032 + Gm973 protein_coding processed_transcript MGP_C3HHeJ_T0019840.1 MGP_C3HHeJ_G0015837.1 mouse_genomes_project 1 59389111 59396637 + MGP_C3HHeJ_P0019840 Gm973 protein_coding protein_coding MGP_C3HHeJ_T0012185.1 MGP_C3HHeJ_G0010289.1 mouse_genomes_project 1 154700308 154700549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000657.1 MGP_C3HHeJ_G0000602.1 mouse_genomes_project 1 157179446 157182003 - TEC TEC MGP_C3HHeJ_T0012269.1 MGP_C3HHeJ_G0010373.1 mouse_genomes_project 1 197213481 197213813 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002908.1 MGP_C3HHeJ_G0002732.1 mouse_genomes_project 1 190399975 190406039 - Gm34882 antisense antisense MGP_C3HHeJ_T0021531.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485079 123565848 + MGP_C3HHeJ_P0021531 Ccdc93 protein_coding protein_coding MGP_C3HHeJ_T0021532.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485105 123505720 + Ccdc93 protein_coding retained_intron MGP_C3HHeJ_T0021533.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485125 123506413 + Ccdc93 protein_coding processed_transcript MGP_C3HHeJ_T0021534.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485138 123500683 + Ccdc93 protein_coding processed_transcript MGP_C3HHeJ_T0021535.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123485140 123560010 + MGP_C3HHeJ_P0021535 Ccdc93 protein_coding protein_coding MGP_C3HHeJ_T0021536.1 MGP_C3HHeJ_G0016179.1 mouse_genomes_project 1 123549616 123557902 + Ccdc93 protein_coding retained_intron MGP_C3HHeJ_T0000593.1 MGP_C3HHeJ_G0000540.1 mouse_genomes_project 1 132845621 132847876 + TEC TEC MGP_C3HHeJ_T0098678.1 MGP_C3HHeJ_G0036872.1 mouse_genomes_project 1 183530078 183530245 + Gm24405 snRNA snRNA MGP_C3HHeJ_T0023126.1 MGP_C3HHeJ_G0016506.1 mouse_genomes_project 1 175036317 175061339 - MGP_C3HHeJ_P0023126 Sdhc protein_coding protein_coding MGP_C3HHeJ_T0023127.1 MGP_C3HHeJ_G0016506.1 mouse_genomes_project 1 175038551 175061327 - MGP_C3HHeJ_P0023127 Sdhc protein_coding protein_coding MGP_C3HHeJ_T0023128.1 MGP_C3HHeJ_G0016506.1 mouse_genomes_project 1 175048655 175061324 - MGP_C3HHeJ_P0023128 Sdhc protein_coding protein_coding MGP_C3HHeJ_T0021325.1 MGP_C3HHeJ_G0016131.1 mouse_genomes_project 1 106382010 106611900 + MGP_C3HHeJ_P0021325 Cdh20 protein_coding protein_coding MGP_C3HHeJ_T0018858.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018858 protein_coding protein_coding MGP_C3HHeJ_T0018859.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018859 protein_coding protein_coding MGP_C3HHeJ_T0018860.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018860 protein_coding protein_coding MGP_C3HHeJ_T0018861.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018861 protein_coding protein_coding MGP_C3HHeJ_T0018862.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19859740 20372596 - MGP_C3HHeJ_P0018862 protein_coding protein_coding MGP_C3HHeJ_T0018863.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19860404 19890843 - MGP_C3HHeJ_P0018863 protein_coding protein_coding MGP_C3HHeJ_T0018864.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19861914 20372596 - MGP_C3HHeJ_P0018864 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018865.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 19861914 20014490 - MGP_C3HHeJ_P0018865 protein_coding protein_coding MGP_C3HHeJ_T0018866.1 MGP_C3HHeJ_G0015653.1 mouse_genomes_project 1 20019600 20372596 - MGP_C3HHeJ_P0018866 protein_coding protein_coding MGP_C3HHeJ_T0011145.1 MGP_C3HHeJ_G0009278.1 mouse_genomes_project 1 13226471 13226774 + Gm23259 misc_RNA misc_RNA MGP_C3HHeJ_T0000332.1 MGP_C3HHeJ_G0000282.1 mouse_genomes_project 1 2479259 2481292 + TEC TEC MGP_C3HHeJ_T0023633.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185547542 185558006 + MGP_C3HHeJ_P0023633 Parp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023634.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185547547 185580167 + MGP_C3HHeJ_P0023634 Parp1 protein_coding protein_coding MGP_C3HHeJ_T0023635.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185547844 185556469 + MGP_C3HHeJ_P0023635 Parp1 protein_coding protein_coding MGP_C3HHeJ_T0023636.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185568307 185570491 + Parp1 protein_coding retained_intron MGP_C3HHeJ_T0023637.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185577137 185579109 + Parp1 protein_coding retained_intron MGP_C3HHeJ_T0023638.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185577748 185579019 + Parp1 protein_coding retained_intron MGP_C3HHeJ_T0023639.1 MGP_C3HHeJ_G0016632.1 mouse_genomes_project 1 185577900 185580165 + MGP_C3HHeJ_P0023639 Parp1 protein_coding protein_coding MGP_C3HHeJ_T0002785.1 MGP_C3HHeJ_G0002637.1 mouse_genomes_project 1 89320583 89326025 - 4930453O03Rik antisense antisense MGP_C3HHeJ_T0005829.1 MGP_C3HHeJ_G0004879.1 mouse_genomes_project 1 134712966 134718634 - Gm29630 lincRNA lincRNA MGP_C3HHeJ_T0012209.1 MGP_C3HHeJ_G0010313.1 mouse_genomes_project 1 165402772 165403976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005581.1 MGP_C3HHeJ_G0004688.1 mouse_genomes_project 1 14574410 14579111 + Gm28784 lincRNA lincRNA MGP_C3HHeJ_T0009445.1 MGP_C3HHeJ_G0007578.1 mouse_genomes_project 1 136221393 136221481 - Mir6903 miRNA miRNA MGP_C3HHeJ_T0002820.1 MGP_C3HHeJ_G0002663.1 mouse_genomes_project 1 134820562 134821945 + Gm15849 antisense antisense MGP_C3HHeJ_T0011762.1 MGP_C3HHeJ_G0009866.1 mouse_genomes_project 1 3132096 3133179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012264.1 MGP_C3HHeJ_G0010368.1 mouse_genomes_project 1 195137300 195137562 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002882.1 MGP_C3HHeJ_G0002711.1 mouse_genomes_project 1 174047725 174048424 + 4930500M09Rik antisense antisense MGP_C3HHeJ_T0002883.1 MGP_C3HHeJ_G0002711.1 mouse_genomes_project 1 174047725 174049291 + 4930500M09Rik antisense antisense MGP_C3HHeJ_T0000445.1 MGP_C3HHeJ_G0000392.1 mouse_genomes_project 1 54947071 54951825 + TEC TEC MGP_C3HHeJ_T0019221.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36364917 36429529 + MGP_C3HHeJ_P0019221 Eif5b protein_coding protein_coding MGP_C3HHeJ_T0019222.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36365036 36425971 + Eif5b protein_coding retained_intron MGP_C3HHeJ_T0019223.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36414863 36419356 + Eif5b protein_coding retained_intron MGP_C3HHeJ_T0019224.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36416757 36420592 + Eif5b protein_coding processed_transcript MGP_C3HHeJ_T0019225.1 MGP_C3HHeJ_G0015719.1 mouse_genomes_project 1 36418549 36422719 + Eif5b protein_coding retained_intron MGP_C3HHeJ_T0020934.1 MGP_C3HHeJ_G0016039.1 mouse_genomes_project 1 88927990 89117572 + MGP_C3HHeJ_P0020934 protein_coding protein_coding MGP_C3HHeJ_T0020935.1 MGP_C3HHeJ_G0016039.1 mouse_genomes_project 1 88928013 89122344 + MGP_C3HHeJ_P0020935 protein_coding protein_coding MGP_C3HHeJ_T0020936.1 MGP_C3HHeJ_G0016039.1 mouse_genomes_project 1 88928074 89117504 + MGP_C3HHeJ_P0020936 protein_coding protein_coding MGP_C3HHeJ_T0022829.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166467175 166493012 - MGP_C3HHeJ_P0022829 Fmo2 protein_coding protein_coding MGP_C3HHeJ_T0022830.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166467180 166479285 - Fmo2 protein_coding retained_intron MGP_C3HHeJ_T0022831.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166469294 166492965 - MGP_C3HHeJ_P0022831 Fmo2 protein_coding protein_coding MGP_C3HHeJ_T0022832.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166470897 166473556 - Fmo2 protein_coding processed_transcript MGP_C3HHeJ_T0022833.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166480337 166492784 - MGP_C3HHeJ_P0022833 Fmo2 protein_coding protein_coding MGP_C3HHeJ_T0022834.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166480847 166493026 - Fmo2 protein_coding retained_intron MGP_C3HHeJ_T0022835.1 MGP_C3HHeJ_G0016432.1 mouse_genomes_project 1 166491980 166493020 - Fmo2 protein_coding retained_intron MGP_C3HHeJ_T0019209.1 MGP_C3HHeJ_G0015716.1 mouse_genomes_project 1 36265387 36276490 - MGP_C3HHeJ_P0019209 Lyg2 protein_coding protein_coding MGP_C3HHeJ_T0012011.1 MGP_C3HHeJ_G0010115.1 mouse_genomes_project 1 75927364 75928945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016817.1 MGP_C3HHeJ_G0014874.1 mouse_genomes_project 1 140598439 140599581 + Gm4258 processed_transcript retained_intron MGP_C3HHeJ_T0016818.1 MGP_C3HHeJ_G0014874.1 mouse_genomes_project 1 140598442 140707902 + Gm4258 processed_transcript lincRNA MGP_C3HHeJ_T0099825.1 MGP_C3HHeJ_G0038019.1 mouse_genomes_project 1 13029458 13029570 - Gm25227 snoRNA snoRNA MGP_C3HHeJ_T0000418.1 MGP_C3HHeJ_G0000365.1 mouse_genomes_project 1 35671727 35672261 - TEC TEC MGP_C3HHeJ_T0020132.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990562 70430741 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020133.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990563 70430642 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020134.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990580 70918988 + MGP_C3HHeJ_P0020134 Spag16 protein_coding protein_coding MGP_C3HHeJ_T0020135.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69990584 70093854 + MGP_C3HHeJ_P0020135 Spag16 protein_coding protein_coding MGP_C3HHeJ_T0020136.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 69999849 70041853 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020137.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 70113985 70918988 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0020138.1 MGP_C3HHeJ_G0015891.1 mouse_genomes_project 1 70114012 70446925 + Spag16 protein_coding processed_transcript MGP_C3HHeJ_T0098655.1 MGP_C3HHeJ_G0036849.1 mouse_genomes_project 1 139656140 139656200 - Gm23763 snRNA snRNA MGP_C3HHeJ_T0002829.1 MGP_C3HHeJ_G0002668.1 mouse_genomes_project 1 137382388 137394679 + Gm28892 antisense antisense MGP_C3HHeJ_T0098681.1 MGP_C3HHeJ_G0036875.1 mouse_genomes_project 1 189706748 189706846 - Gm23349 snRNA snRNA MGP_C3HHeJ_T0019628.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54539367 54559274 + MGP_C3HHeJ_P0019628 Coq10b protein_coding protein_coding MGP_C3HHeJ_T0019629.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54539367 54558525 + MGP_C3HHeJ_P0019629 Coq10b protein_coding protein_coding MGP_C3HHeJ_T0019630.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54539466 54540691 + Coq10b protein_coding retained_intron MGP_C3HHeJ_T0019631.1 MGP_C3HHeJ_G0015799.1 mouse_genomes_project 1 54546210 54548329 + Coq10b protein_coding retained_intron MGP_C3HHeJ_T0021262.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 94993077 95002892 - MGP_C3HHeJ_P0021262 Dtymk protein_coding protein_coding MGP_C3HHeJ_T0021263.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 94993225 95000009 - MGP_C3HHeJ_P0021263 Dtymk protein_coding protein_coding MGP_C3HHeJ_T0021264.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 94999387 95000369 - Dtymk protein_coding processed_transcript MGP_C3HHeJ_T0021265.1 MGP_C3HHeJ_G0016115.1 mouse_genomes_project 1 95001053 95002864 - MGP_C3HHeJ_P0021265 Dtymk protein_coding protein_coding MGP_C3HHeJ_T0019075.1 MGP_C3HHeJ_G0015693.1 mouse_genomes_project 1 34639246 34688679 + MGP_C3HHeJ_P0019075 Fer1l5 protein_coding protein_coding MGP_C3HHeJ_T0019076.1 MGP_C3HHeJ_G0015693.1 mouse_genomes_project 1 34652435 34671430 + MGP_C3HHeJ_P0019076 Fer1l5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0019077.1 MGP_C3HHeJ_G0015693.1 mouse_genomes_project 1 34683459 34688682 + MGP_C3HHeJ_P0019077 Fer1l5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000722.1 MGP_C3HHeJ_G0000667.1 mouse_genomes_project 1 181670382 181672279 - TEC TEC MGP_C3HHeJ_T0021826.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134957308 134971043 - MGP_C3HHeJ_P0021826 Cntn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021827.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134957308 134963516 - MGP_C3HHeJ_P0021827 Cntn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0021828.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134959653 134991475 - Cntn2 protein_coding retained_intron MGP_C3HHeJ_T0021829.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134959657 134991524 - MGP_C3HHeJ_P0021829 Cntn2 protein_coding protein_coding MGP_C3HHeJ_T0021830.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134959667 134991450 - Cntn2 protein_coding retained_intron MGP_C3HHeJ_T0021831.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134964879 134966867 - Cntn2 protein_coding retained_intron MGP_C3HHeJ_T0021832.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134976648 134981534 - MGP_C3HHeJ_P0021832 Cntn2 protein_coding protein_coding MGP_C3HHeJ_T0021833.1 MGP_C3HHeJ_G0016244.1 mouse_genomes_project 1 134981306 134991841 - MGP_C3HHeJ_P0021833 Cntn2 protein_coding protein_coding MGP_C3HHeJ_T0002795.1 MGP_C3HHeJ_G0002647.1 mouse_genomes_project 1 94926847 94948538 + Gm10550 antisense antisense MGP_C3HHeJ_T0022802.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166270320 166341289 - MGP_C3HHeJ_P0022802 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022803.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166270322 166341320 - MGP_C3HHeJ_P0022803 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022804.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166271380 166304990 - MGP_C3HHeJ_P0022804 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022805.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166271383 166305416 - MGP_C3HHeJ_P0022805 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022806.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166272178 166341245 - MGP_C3HHeJ_P0022806 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022807.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166272690 166341314 - MGP_C3HHeJ_P0022807 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022808.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166283013 166288415 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022809.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166310590 166341168 - MGP_C3HHeJ_P0022809 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022810.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166313025 166314240 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022811.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166320655 166341261 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022812.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166321308 166341114 - MGP_C3HHeJ_P0022812 Prrc2c protein_coding protein_coding MGP_C3HHeJ_T0022813.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166323668 166325632 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022814.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166329381 166331486 - Prrc2c protein_coding retained_intron MGP_C3HHeJ_T0022815.1 MGP_C3HHeJ_G0016429.1 mouse_genomes_project 1 166331021 166341251 - Prrc2c protein_coding processed_transcript MGP_C3HHeJ_T0009434.1 MGP_C3HHeJ_G0007567.1 mouse_genomes_project 1 97561752 97561841 - Gm24586 miRNA miRNA MGP_C3HHeJ_T0099832.1 MGP_C3HHeJ_G0038026.1 mouse_genomes_project 1 20831559 20831680 + Gm24176 snoRNA snoRNA MGP_C3HHeJ_T0012078.1 MGP_C3HHeJ_G0010182.1 mouse_genomes_project 1 107620136 107620691 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011993.1 MGP_C3HHeJ_G0010097.1 mouse_genomes_project 1 66017494 66017832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101598.1 MGP_C3HHeJ_G0039564.1 mouse_genomes_project 1 178630232 178630776 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0022608.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452683 160462161 - MGP_C3HHeJ_P0022608 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022609.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452683 160462161 - MGP_C3HHeJ_P0022609 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022610.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452691 160462160 - MGP_C3HHeJ_P0022610 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022611.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452698 160462191 - MGP_C3HHeJ_P0022611 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022612.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452857 160461899 - MGP_C3HHeJ_P0022612 Tex35 protein_coding protein_coding MGP_C3HHeJ_T0022613.1 MGP_C3HHeJ_G0016396.1 mouse_genomes_project 1 160452859 160462156 - MGP_C3HHeJ_P0022613 Tex35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005958.1 MGP_C3HHeJ_G0004979.1 mouse_genomes_project 1 189736584 189759519 - Gm37800 lincRNA lincRNA MGP_C3HHeJ_T0005959.1 MGP_C3HHeJ_G0004979.1 mouse_genomes_project 1 189737222 189748053 - Gm37800 lincRNA lincRNA MGP_C3HHeJ_T0000648.1 MGP_C3HHeJ_G0000593.1 mouse_genomes_project 1 153452819 153454962 + TEC TEC MGP_C3HHeJ_T0019928.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472005 61919044 + Pard3b protein_coding processed_transcript MGP_C3HHeJ_T0019929.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472005 62482346 + MGP_C3HHeJ_P0019929 Pard3b protein_coding protein_coding MGP_C3HHeJ_T0019930.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472056 61607528 + Pard3b protein_coding retained_intron MGP_C3HHeJ_T0019931.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472067 62011605 + Pard3b protein_coding retained_intron MGP_C3HHeJ_T0019932.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472424 62478011 + MGP_C3HHeJ_P0019932 Pard3b protein_coding protein_coding MGP_C3HHeJ_T0019933.1 MGP_C3HHeJ_G0015852.1 mouse_genomes_project 1 61472424 62482346 + MGP_C3HHeJ_P0019933 Pard3b protein_coding protein_coding MGP_C3HHeJ_T0011826.1 MGP_C3HHeJ_G0009930.1 mouse_genomes_project 1 19059264 19060353 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000647.1 MGP_C3HHeJ_G0000592.1 mouse_genomes_project 1 152535837 152538143 - TEC TEC MGP_C3HHeJ_T0018593.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6780125 6812684 - MGP_C3HHeJ_P0018593 Mybl1 protein_coding protein_coding MGP_C3HHeJ_T0018594.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6782246 6812499 - MGP_C3HHeJ_P0018594 Mybl1 protein_coding protein_coding MGP_C3HHeJ_T0018595.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6788835 6791311 - Mybl1 protein_coding retained_intron MGP_C3HHeJ_T0018596.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6790972 6796147 - Mybl1 protein_coding retained_intron MGP_C3HHeJ_T0018597.1 MGP_C3HHeJ_G0015598.1 mouse_genomes_project 1 6794537 6812129 - MGP_C3HHeJ_P0018597 Mybl1 protein_coding protein_coding MGP_C3HHeJ_T0023667.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954472 185965257 + MGP_C3HHeJ_P0023667 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023668.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954586 185967957 + MGP_C3HHeJ_P0023668 Tmem63a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0023669.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954587 185988198 + MGP_C3HHeJ_P0023669 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023670.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185954702 185969060 + MGP_C3HHeJ_P0023670 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023671.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185956163 185988189 + MGP_C3HHeJ_P0023671 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023672.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185958034 185958843 + MGP_C3HHeJ_P0023672 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023673.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185958090 185960967 + MGP_C3HHeJ_P0023673 Tmem63a protein_coding protein_coding MGP_C3HHeJ_T0023674.1 MGP_C3HHeJ_G0016641.1 mouse_genomes_project 1 185973193 185973968 + Tmem63a protein_coding retained_intron MGP_C3HHeJ_T0002693.1 MGP_C3HHeJ_G0002568.1 mouse_genomes_project 1 13609731 13615077 + Gm7568 antisense antisense MGP_C3HHeJ_T0002694.1 MGP_C3HHeJ_G0002568.1 mouse_genomes_project 1 13609731 13624071 + Gm7568 antisense antisense MGP_C3HHeJ_T0002695.1 MGP_C3HHeJ_G0002568.1 mouse_genomes_project 1 13609768 13615073 + Gm7568 antisense antisense MGP_C3HHeJ_T0002722.1 MGP_C3HHeJ_G0002590.1 mouse_genomes_project 1 36767365 36777285 + Gm16152 antisense antisense MGP_C3HHeJ_T0002723.1 MGP_C3HHeJ_G0002590.1 mouse_genomes_project 1 36771361 36772777 + Gm16152 antisense antisense MGP_C3HHeJ_T0023784.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188432676 188453992 - MGP_C3HHeJ_P0023784 protein_coding protein_coding MGP_C3HHeJ_T0023785.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188432778 188440610 - MGP_C3HHeJ_P0023785 protein_coding protein_coding MGP_C3HHeJ_T0023786.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188433291 188478114 - MGP_C3HHeJ_P0023786 protein_coding unknown_likely_coding MGP_C3HHeJ_T0023787.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188441596 188446440 - MGP_C3HHeJ_P0023787 protein_coding protein_coding MGP_C3HHeJ_T0023788.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188452427 188459804 - protein_coding retained_intron MGP_C3HHeJ_T0023789.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188452923 188459782 - MGP_C3HHeJ_P0023789 protein_coding protein_coding MGP_C3HHeJ_T0023790.1 MGP_C3HHeJ_G0016664.1 mouse_genomes_project 1 188467113 188478111 - MGP_C3HHeJ_P0023790 protein_coding protein_coding MGP_C3HHeJ_T0023393.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177668783 177703232 - MGP_C3HHeJ_P0023393 Cadm3 protein_coding protein_coding MGP_C3HHeJ_T0023394.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177671518 177703222 - MGP_C3HHeJ_P0023394 Cadm3 protein_coding protein_coding MGP_C3HHeJ_T0023395.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177672370 177677445 - Cadm3 protein_coding retained_intron MGP_C3HHeJ_T0023396.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177678023 177703185 - Cadm3 protein_coding retained_intron MGP_C3HHeJ_T0023397.1 MGP_C3HHeJ_G0016570.1 mouse_genomes_project 1 177680417 177703170 - Cadm3 protein_coding retained_intron MGP_C3HHeJ_T0009391.1 MGP_C3HHeJ_G0007524.1 mouse_genomes_project 1 34399239 34399301 - Mir6897 miRNA miRNA MGP_C3HHeJ_T0010250.1 MGP_C3HHeJ_G0008383.1 mouse_genomes_project 2 7689027 7689135 + Gm22677 miRNA miRNA MGP_C3HHeJ_T0052515.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775748 18785799 + MGP_C3HHeJ_P0052515 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052516.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775763 18785166 + MGP_C3HHeJ_P0052516 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052517.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775783 18784069 + MGP_C3HHeJ_P0052517 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052518.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775797 18782332 + MGP_C3HHeJ_P0052518 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0052519.1 MGP_C3HHeJ_G0025121.1 mouse_genomes_project 2 18775811 18785098 + MGP_C3HHeJ_P0052519 Thnsl1 protein_coding protein_coding MGP_C3HHeJ_T0057416.1 MGP_C3HHeJ_G0026241.1 mouse_genomes_project 2 133347018 133347737 + MGP_C3HHeJ_P0057416 Gm11037 protein_coding protein_coding MGP_C3HHeJ_T0054173.1 MGP_C3HHeJ_G0025402.1 mouse_genomes_project 2 34798296 34799235 + MGP_C3HHeJ_P0054173 Olfr342 protein_coding protein_coding MGP_C3HHeJ_T0056836.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122925653 122947533 + MGP_C3HHeJ_P0056836 Map1a protein_coding protein_coding MGP_C3HHeJ_T0056837.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122925823 122927097 + Map1a protein_coding processed_transcript MGP_C3HHeJ_T0056838.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122932084 122946127 + MGP_C3HHeJ_P0056838 Map1a protein_coding protein_coding MGP_C3HHeJ_T0056839.1 MGP_C3HHeJ_G0026106.1 mouse_genomes_project 2 122932093 122944310 + Map1a protein_coding processed_transcript MGP_C3HHeJ_T0007325.1 MGP_C3HHeJ_G0006002.1 mouse_genomes_project 2 173033442 173034250 - Gm14260 lincRNA lincRNA MGP_C3HHeJ_T0056787.1 MGP_C3HHeJ_G0026099.1 mouse_genomes_project 2 122675919 122715240 - MGP_C3HHeJ_P0056787 Tgm5 protein_coding protein_coding MGP_C3HHeJ_T0056788.1 MGP_C3HHeJ_G0026099.1 mouse_genomes_project 2 122703302 122715221 - Tgm5 protein_coding retained_intron MGP_C3HHeJ_T0003880.1 MGP_C3HHeJ_G0003463.1 mouse_genomes_project 2 30991578 30993825 - Gm13523 antisense antisense MGP_C3HHeJ_T0059548.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186131850 186168372 + MGP_C3HHeJ_P0059548 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059549.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186131891 186165510 + MGP_C3HHeJ_P0059549 Dnajc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059550.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186131916 186165508 + MGP_C3HHeJ_P0059550 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059551.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186132177 186162047 + MGP_C3HHeJ_P0059551 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059552.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186132312 186162865 + MGP_C3HHeJ_P0059552 Dnajc5 protein_coding protein_coding MGP_C3HHeJ_T0059553.1 MGP_C3HHeJ_G0026743.1 mouse_genomes_project 2 186162600 186163533 + Dnajc5 protein_coding processed_transcript MGP_C3HHeJ_T0007336.1 MGP_C3HHeJ_G0006011.1 mouse_genomes_project 2 174294016 174295621 - Gm17619 lincRNA lincRNA MGP_C3HHeJ_T0052465.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16877957 16891070 + Msrb2 protein_coding processed_transcript MGP_C3HHeJ_T0052466.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16878153 16904270 + MGP_C3HHeJ_P0052466 Msrb2 protein_coding protein_coding MGP_C3HHeJ_T0052467.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16878185 16902614 + Msrb2 protein_coding processed_transcript MGP_C3HHeJ_T0052468.1 MGP_C3HHeJ_G0025114.1 mouse_genomes_project 2 16878358 16903558 + Msrb2 protein_coding processed_transcript MGP_C3HHeJ_T0013567.1 MGP_C3HHeJ_G0011671.1 mouse_genomes_project 2 110418538 110419024 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011407.1 MGP_C3HHeJ_G0009540.1 mouse_genomes_project 2 71787768 71788076 + Zakit misc_RNA misc_RNA MGP_C3HHeJ_T0058810.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291464 168292602 + Wfdc2 protein_coding processed_transcript MGP_C3HHeJ_T0058811.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291630 168297562 + MGP_C3HHeJ_P0058811 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0058812.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291750 168297562 + MGP_C3HHeJ_P0058812 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0058813.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168291765 168297562 + MGP_C3HHeJ_P0058813 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0058814.1 MGP_C3HHeJ_G0026574.1 mouse_genomes_project 2 168292070 168293238 + MGP_C3HHeJ_P0058814 Wfdc2 protein_coding protein_coding MGP_C3HHeJ_T0055131.1 MGP_C3HHeJ_G0025599.1 mouse_genomes_project 2 76251106 76254056 + MGP_C3HHeJ_P0055131 Dfnb59 protein_coding protein_coding MGP_C3HHeJ_T0055132.1 MGP_C3HHeJ_G0025599.1 mouse_genomes_project 2 76251129 76258428 + MGP_C3HHeJ_P0055132 Dfnb59 protein_coding protein_coding MGP_C3HHeJ_T0055133.1 MGP_C3HHeJ_G0025599.1 mouse_genomes_project 2 76252903 76261119 + MGP_C3HHeJ_P0055133 Dfnb59 protein_coding protein_coding MGP_C3HHeJ_T0003861.1 MGP_C3HHeJ_G0003446.1 mouse_genomes_project 2 24898978 24916459 - Dbhos antisense antisense MGP_C3HHeJ_T0013613.1 MGP_C3HHeJ_G0011717.1 mouse_genomes_project 2 133541623 133541902 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058089.1 MGP_C3HHeJ_G0026417.1 mouse_genomes_project 2 157033456 157048257 - MGP_C3HHeJ_P0058089 Sun5 protein_coding protein_coding MGP_C3HHeJ_T0058090.1 MGP_C3HHeJ_G0026417.1 mouse_genomes_project 2 157038700 157048257 - Sun5 protein_coding processed_transcript MGP_C3HHeJ_T0058091.1 MGP_C3HHeJ_G0026417.1 mouse_genomes_project 2 157042571 157048257 - Sun5 protein_coding processed_transcript MGP_C3HHeJ_T0054222.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35774877 35942979 - MGP_C3HHeJ_P0054222 Strbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054228.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35862413 35943045 - MGP_C3HHeJ_P0054228 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054229.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35862566 35887060 - Strbp protein_coding processed_transcript MGP_C3HHeJ_T0054230.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35872136 35879101 - MGP_C3HHeJ_P0054230 Strbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054231.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35875753 36001324 - MGP_C3HHeJ_P0054231 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054232.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35929408 36001397 - Strbp protein_coding processed_transcript MGP_C3HHeJ_T0054233.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35929937 35954164 - MGP_C3HHeJ_P0054233 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054234.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35935329 36001908 - MGP_C3HHeJ_P0054234 Strbp protein_coding protein_coding MGP_C3HHeJ_T0054235.1 MGP_C3HHeJ_G0025430.1 mouse_genomes_project 2 35942879 36001198 - Strbp protein_coding processed_transcript MGP_C3HHeJ_T0013472.1 MGP_C3HHeJ_G0011576.1 mouse_genomes_project 2 78507602 78507770 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013369.1 MGP_C3HHeJ_G0011473.1 mouse_genomes_project 2 38553298 38553761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010266.1 MGP_C3HHeJ_G0008399.1 mouse_genomes_project 2 7698872 7698983 + miRNA miRNA MGP_C3HHeJ_T0056282.1 MGP_C3HHeJ_G0025961.1 mouse_genomes_project 2 110861110 110871982 + MGP_C3HHeJ_P0056282 Lin7c protein_coding protein_coding MGP_C3HHeJ_T0056283.1 MGP_C3HHeJ_G0025961.1 mouse_genomes_project 2 110861127 110867652 + Lin7c protein_coding retained_intron MGP_C3HHeJ_T0055357.1 MGP_C3HHeJ_G0025643.1 mouse_genomes_project 2 84580544 84583748 + MGP_C3HHeJ_P0055357 Timm10 protein_coding protein_coding MGP_C3HHeJ_T0055358.1 MGP_C3HHeJ_G0025643.1 mouse_genomes_project 2 84580931 84583648 + MGP_C3HHeJ_P0055358 Timm10 protein_coding protein_coding MGP_C3HHeJ_T0007057.1 MGP_C3HHeJ_G0005785.1 mouse_genomes_project 2 8581721 8638356 - 8030442B05Rik lincRNA lincRNA MGP_C3HHeJ_T0013592.1 MGP_C3HHeJ_G0011696.1 mouse_genomes_project 2 123039361 123039608 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057260.1 MGP_C3HHeJ_G0026206.1 mouse_genomes_project 2 131434769 131444936 - MGP_C3HHeJ_P0057260 Il1a protein_coding protein_coding MGP_C3HHeJ_T0059150.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172926929 172994236 - MGP_C3HHeJ_P0059150 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059151.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172941981 172948923 - MGP_C3HHeJ_P0059151 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059152.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172963302 172993921 - MGP_C3HHeJ_P0059152 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059153.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172972772 172993938 - MGP_C3HHeJ_P0059153 Zfp64 protein_coding protein_coding MGP_C3HHeJ_T0059154.1 MGP_C3HHeJ_G0026648.1 mouse_genomes_project 2 172989171 172993915 - Zfp64 protein_coding retained_intron MGP_C3HHeJ_T0013444.1 MGP_C3HHeJ_G0011548.1 mouse_genomes_project 2 69084240 69084673 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054346.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43494809 43636053 - MGP_C3HHeJ_P0054346 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054347.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43498304 43630703 - MGP_C3HHeJ_P0054347 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054348.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43498306 43628226 - MGP_C3HHeJ_P0054348 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054349.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43498306 43630997 - MGP_C3HHeJ_P0054349 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054350.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43499517 43630720 - MGP_C3HHeJ_P0054350 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054351.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43499583 43627999 - MGP_C3HHeJ_P0054351 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054352.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43499624 43630608 - MGP_C3HHeJ_P0054352 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054353.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43507989 43628163 - MGP_C3HHeJ_P0054353 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054354.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43512878 43628884 - MGP_C3HHeJ_P0054354 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054355.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43512903 43536564 - MGP_C3HHeJ_P0054355 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054356.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43512969 43627955 - MGP_C3HHeJ_P0054356 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054357.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43513868 43567671 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054358.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43513870 43628866 - MGP_C3HHeJ_P0054358 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054359.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43520305 43628786 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054360.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43531076 43630986 - MGP_C3HHeJ_P0054360 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054361.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43534469 43630807 - Zeb2 protein_coding retained_intron MGP_C3HHeJ_T0054362.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43534548 43630963 - Zeb2 protein_coding retained_intron MGP_C3HHeJ_T0054363.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43536552 43628338 - MGP_C3HHeJ_P0054363 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054364.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43536637 43631002 - MGP_C3HHeJ_P0054364 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054365.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43536708 43628465 - MGP_C3HHeJ_P0054365 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054366.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43609395 43628444 - MGP_C3HHeJ_P0054366 Zeb2 protein_coding protein_coding MGP_C3HHeJ_T0054367.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43621777 43630966 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054368.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43621777 43628198 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054369.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43621777 43630934 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054370.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43623004 43627787 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054371.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43623865 43628195 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0054372.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43624224 43630719 - Zeb2 protein_coding retained_intron MGP_C3HHeJ_T0054373.1 MGP_C3HHeJ_G0025450.1 mouse_genomes_project 2 43627799 43631222 - Zeb2 protein_coding processed_transcript MGP_C3HHeJ_T0101872.1 MGP_C3HHeJ_G0039837.1 mouse_genomes_project 2 20076716 20078911 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010292.1 MGP_C3HHeJ_G0008425.1 mouse_genomes_project 2 17418700 17418776 + Gm44457 miRNA miRNA MGP_C3HHeJ_T0056735.1 MGP_C3HHeJ_G0026091.1 mouse_genomes_project 2 122222253 122236657 + MGP_C3HHeJ_P0056735 Haus2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056736.1 MGP_C3HHeJ_G0026091.1 mouse_genomes_project 2 122222323 122235969 + MGP_C3HHeJ_P0056736 Haus2 protein_coding protein_coding MGP_C3HHeJ_T0055377.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84745301 84783723 - MGP_C3HHeJ_P0055377 P2rx3 protein_coding protein_coding MGP_C3HHeJ_T0055378.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84745502 84781583 - MGP_C3HHeJ_P0055378 P2rx3 protein_coding protein_coding MGP_C3HHeJ_T0055379.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84745672 84783356 - MGP_C3HHeJ_P0055379 P2rx3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055380.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84771373 84779571 - P2rx3 protein_coding processed_transcript MGP_C3HHeJ_T0055381.1 MGP_C3HHeJ_G0025649.1 mouse_genomes_project 2 84778313 84779455 - P2rx3 protein_coding processed_transcript MGP_C3HHeJ_T0017659.1 MGP_C3HHeJ_G0015238.1 mouse_genomes_project 2 148426397 148467965 + BC039771 processed_transcript processed_transcript MGP_C3HHeJ_T0017660.1 MGP_C3HHeJ_G0015238.1 mouse_genomes_project 2 148454170 148507796 + BC039771 processed_transcript processed_transcript MGP_C3HHeJ_T0056333.1 MGP_C3HHeJ_G0025993.1 mouse_genomes_project 2 113113246 113115152 - MGP_C3HHeJ_P0056333 Olfr1306 protein_coding protein_coding MGP_C3HHeJ_T0004011.1 MGP_C3HHeJ_G0003553.1 mouse_genomes_project 2 131383461 131404979 + Gm14024 antisense antisense MGP_C3HHeJ_T0003819.1 MGP_C3HHeJ_G0003415.1 mouse_genomes_project 2 2931041 2935652 + Gm13267 antisense antisense MGP_C3HHeJ_T0003820.1 MGP_C3HHeJ_G0003415.1 mouse_genomes_project 2 2931131 2934423 + Gm13267 antisense antisense MGP_C3HHeJ_T0055489.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87551313 87554651 - MGP_C3HHeJ_P0055489 Pramel7 protein_coding protein_coding MGP_C3HHeJ_T0055490.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87553116 87558894 - Pramel7 protein_coding processed_transcript MGP_C3HHeJ_T0055491.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87553210 87562889 - Pramel7 protein_coding processed_transcript MGP_C3HHeJ_T0055492.1 MGP_C3HHeJ_G0025737.1 mouse_genomes_project 2 87553352 87558903 - Pramel7 protein_coding processed_transcript MGP_C3HHeJ_T0100470.1 MGP_C3HHeJ_G0038664.1 mouse_genomes_project 2 97666308 97666431 + Gm22957 snoRNA snoRNA MGP_C3HHeJ_T0052894.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23248397 23258092 - MGP_C3HHeJ_P0052894 Mamdc4 protein_coding protein_coding MGP_C3HHeJ_T0052895.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23248419 23258134 - MGP_C3HHeJ_P0052895 Mamdc4 protein_coding protein_coding MGP_C3HHeJ_T0052896.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23248592 23257030 - MGP_C3HHeJ_P0052896 Mamdc4 protein_coding protein_coding MGP_C3HHeJ_T0052897.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23255233 23256261 - Mamdc4 protein_coding processed_transcript MGP_C3HHeJ_T0052898.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23255277 23255891 - Mamdc4 protein_coding processed_transcript MGP_C3HHeJ_T0052899.1 MGP_C3HHeJ_G0025189.1 mouse_genomes_project 2 23256949 23261620 - Mamdc4 protein_coding processed_transcript MGP_C3HHeJ_T0003812.1 MGP_C3HHeJ_G0003411.1 mouse_genomes_project 2 1117763 1126714 - 1700080N15Rik antisense antisense MGP_C3HHeJ_T0003813.1 MGP_C3HHeJ_G0003411.1 mouse_genomes_project 2 1117765 1126714 - 1700080N15Rik antisense antisense MGP_C3HHeJ_T0003814.1 MGP_C3HHeJ_G0003411.1 mouse_genomes_project 2 1121173 1126712 - 1700080N15Rik antisense antisense MGP_C3HHeJ_T0058858.1 MGP_C3HHeJ_G0026595.1 mouse_genomes_project 2 168586294 168588434 - Spata25 protein_coding processed_transcript MGP_C3HHeJ_T0058859.1 MGP_C3HHeJ_G0026595.1 mouse_genomes_project 2 168587287 168588443 - MGP_C3HHeJ_P0058859 Spata25 protein_coding protein_coding MGP_C3HHeJ_T0001002.1 MGP_C3HHeJ_G0000939.1 mouse_genomes_project 2 9670060 9671462 - TEC TEC MGP_C3HHeJ_T0057369.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132894458 133038975 - MGP_C3HHeJ_P0057369 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057370.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132899065 132909981 - MGP_C3HHeJ_P0057370 4930402H24Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057371.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132900534 132917172 - MGP_C3HHeJ_P0057371 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057372.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132929770 132932753 - 4930402H24Rik protein_coding retained_intron MGP_C3HHeJ_T0057373.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132932249 132951687 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057374.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132932260 132964901 - MGP_C3HHeJ_P0057374 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057375.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132941707 133039061 - 4930402H24Rik protein_coding retained_intron MGP_C3HHeJ_T0057376.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132971381 132972458 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057377.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132971578 133007184 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057378.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132979067 133039040 - 4930402H24Rik protein_coding retained_intron MGP_C3HHeJ_T0057379.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 132999274 133010771 - 4930402H24Rik protein_coding processed_transcript MGP_C3HHeJ_T0057380.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133001205 133039074 - MGP_C3HHeJ_P0057380 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057381.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133007151 133039066 - MGP_C3HHeJ_P0057381 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057382.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133007186 133039063 - MGP_C3HHeJ_P0057382 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057383.1 MGP_C3HHeJ_G0026235.1 mouse_genomes_project 2 133009142 133111481 - MGP_C3HHeJ_P0057383 4930402H24Rik protein_coding protein_coding MGP_C3HHeJ_T0055845.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109203 92315273 + MGP_C3HHeJ_P0055845 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055846.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109207 92315272 + MGP_C3HHeJ_P0055846 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055847.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109251 92197525 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0055848.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109251 92197525 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0055849.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109253 92315272 + MGP_C3HHeJ_P0055849 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055850.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92109294 92315273 + MGP_C3HHeJ_P0055850 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055851.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92150414 92315273 + MGP_C3HHeJ_P0055851 Ambra1 protein_coding protein_coding MGP_C3HHeJ_T0055852.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92157802 92212328 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0055853.1 MGP_C3HHeJ_G0025878.1 mouse_genomes_project 2 92198223 92213161 + Ambra1 protein_coding processed_transcript MGP_C3HHeJ_T0001004.1 MGP_C3HHeJ_G0000941.1 mouse_genomes_project 2 9705853 9708465 - TEC TEC MGP_C3HHeJ_T0058201.1 MGP_C3HHeJ_G0026449.1 mouse_genomes_project 2 158542828 158544613 + MGP_C3HHeJ_P0058201 Map1lc3a protein_coding protein_coding MGP_C3HHeJ_T0058202.1 MGP_C3HHeJ_G0026449.1 mouse_genomes_project 2 158543074 158544610 + Map1lc3a protein_coding processed_transcript MGP_C3HHeJ_T0058203.1 MGP_C3HHeJ_G0026449.1 mouse_genomes_project 2 158543420 158544608 + Map1lc3a protein_coding processed_transcript MGP_C3HHeJ_T0007259.1 MGP_C3HHeJ_G0005947.1 mouse_genomes_project 2 140316953 140323743 - Gm14062 lincRNA lincRNA MGP_C3HHeJ_T0017508.1 MGP_C3HHeJ_G0015155.1 mouse_genomes_project 2 7555462 7596725 - Gm13261 processed_transcript processed_transcript MGP_C3HHeJ_T0054184.1 MGP_C3HHeJ_G0025412.1 mouse_genomes_project 2 35149275 35150223 + MGP_C3HHeJ_P0054184 Olfr352 protein_coding protein_coding MGP_C3HHeJ_T0013693.1 MGP_C3HHeJ_G0011797.1 mouse_genomes_project 2 160188395 160202687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056937.1 MGP_C3HHeJ_G0026123.1 mouse_genomes_project 2 123778133 123838199 - MGP_C3HHeJ_P0056937 Spg11 protein_coding protein_coding MGP_C3HHeJ_T0056938.1 MGP_C3HHeJ_G0026123.1 mouse_genomes_project 2 123811978 123838109 - Spg11 protein_coding processed_transcript MGP_C3HHeJ_T0056939.1 MGP_C3HHeJ_G0026123.1 mouse_genomes_project 2 123826377 123838188 - Spg11 protein_coding processed_transcript MGP_C3HHeJ_T0055630.1 MGP_C3HHeJ_G0025846.1 mouse_genomes_project 2 90327994 90361615 - MGP_C3HHeJ_P0055630 protein_coding protein_coding MGP_C3HHeJ_T0013441.1 MGP_C3HHeJ_G0011545.1 mouse_genomes_project 2 67340164 67340703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052336.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925043 10925950 + MGP_C3HHeJ_P0052336 Vim protein_coding protein_coding MGP_C3HHeJ_T0052337.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925068 10933930 + MGP_C3HHeJ_P0052337 Vim protein_coding protein_coding MGP_C3HHeJ_T0052338.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925397 10933929 + MGP_C3HHeJ_P0052338 Vim protein_coding protein_coding MGP_C3HHeJ_T0052339.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925438 10929721 + Vim protein_coding retained_intron MGP_C3HHeJ_T0052340.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10925639 10928565 + Vim protein_coding retained_intron MGP_C3HHeJ_T0052341.1 MGP_C3HHeJ_G0025090.1 mouse_genomes_project 2 10930484 10933582 + Vim protein_coding retained_intron MGP_C3HHeJ_T0013590.1 MGP_C3HHeJ_G0011694.1 mouse_genomes_project 2 121447194 121447529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013674.1 MGP_C3HHeJ_G0011778.1 mouse_genomes_project 2 155686769 155686986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099196.1 MGP_C3HHeJ_G0037390.1 mouse_genomes_project 2 70904856 70904960 + Gm23253 snRNA snRNA MGP_C3HHeJ_T0052886.1 MGP_C3HHeJ_G0025187.1 mouse_genomes_project 2 23201458 23232126 - MGP_C3HHeJ_P0052886 Traf2 protein_coding protein_coding MGP_C3HHeJ_T0052887.1 MGP_C3HHeJ_G0025187.1 mouse_genomes_project 2 23202342 23223931 - Traf2 protein_coding retained_intron MGP_C3HHeJ_T0052888.1 MGP_C3HHeJ_G0025187.1 mouse_genomes_project 2 23202342 23232096 - MGP_C3HHeJ_P0052888 Traf2 protein_coding protein_coding MGP_C3HHeJ_T0059463.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788160 185789685 + MGP_C3HHeJ_P0059463 Ppdpf protein_coding protein_coding MGP_C3HHeJ_T0059464.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788209 185789655 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0059465.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788249 185789418 + MGP_C3HHeJ_P0059465 Ppdpf protein_coding protein_coding MGP_C3HHeJ_T0059466.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788260 185789418 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0059467.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788448 185789418 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0059468.1 MGP_C3HHeJ_G0026728.1 mouse_genomes_project 2 185788826 185789418 + Ppdpf protein_coding retained_intron MGP_C3HHeJ_T0055524.1 MGP_C3HHeJ_G0025762.1 mouse_genomes_project 2 88044069 88045042 - MGP_C3HHeJ_P0055524 Olfr1156 protein_coding protein_coding MGP_C3HHeJ_T0010270.1 MGP_C3HHeJ_G0008403.1 mouse_genomes_project 2 7712115 7712218 + Gm22239 miRNA miRNA MGP_C3HHeJ_T0099208.1 MGP_C3HHeJ_G0037402.1 mouse_genomes_project 2 118658243 118658407 + Gm25189 snRNA snRNA MGP_C3HHeJ_T0053490.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231225 28293413 + MGP_C3HHeJ_P0053490 Nup188 protein_coding protein_coding MGP_C3HHeJ_T0053491.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231225 28256492 + MGP_C3HHeJ_P0053491 Nup188 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053492.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231245 28252252 + Nup188 protein_coding processed_transcript MGP_C3HHeJ_T0053493.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231252 28251970 + MGP_C3HHeJ_P0053493 Nup188 protein_coding protein_coding MGP_C3HHeJ_T0053494.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231255 28251969 + MGP_C3HHeJ_P0053494 Nup188 protein_coding protein_coding MGP_C3HHeJ_T0053495.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28231257 28275841 + Nup188 protein_coding retained_intron MGP_C3HHeJ_T0053496.1 MGP_C3HHeJ_G0025299.1 mouse_genomes_project 2 28292086 28293292 + Nup188 protein_coding retained_intron MGP_C3HHeJ_T0058071.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804137 156848853 + MGP_C3HHeJ_P0058071 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058072.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804137 156848853 + MGP_C3HHeJ_P0058072 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058073.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804140 156848853 + MGP_C3HHeJ_P0058073 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058074.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804140 156848853 + MGP_C3HHeJ_P0058074 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058075.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804140 156848853 + MGP_C3HHeJ_P0058075 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058076.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848853 + MGP_C3HHeJ_P0058076 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058077.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848853 + MGP_C3HHeJ_P0058077 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058078.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848853 + MGP_C3HHeJ_P0058078 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058079.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804141 156848849 + MGP_C3HHeJ_P0058079 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058080.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156804304 156848439 + MGP_C3HHeJ_P0058080 Dnmt3b protein_coding protein_coding MGP_C3HHeJ_T0058081.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156822426 156824585 + Dnmt3b protein_coding retained_intron MGP_C3HHeJ_T0058082.1 MGP_C3HHeJ_G0026414.1 mouse_genomes_project 2 156825995 156827043 + Dnmt3b protein_coding retained_intron MGP_C3HHeJ_T0058798.1 MGP_C3HHeJ_G0026571.1 mouse_genomes_project 2 168194255 168197669 - MGP_C3HHeJ_P0058798 Trp53tg5 protein_coding protein_coding MGP_C3HHeJ_T0055391.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84794786 84798906 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055392.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84794819 84821473 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055393.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84795396 84810840 + MGP_C3HHeJ_P0055393 Tnks1bp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055394.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797233 84798824 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055395.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797233 84821477 + MGP_C3HHeJ_P0055395 Tnks1bp1 protein_coding protein_coding MGP_C3HHeJ_T0055396.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797381 84821467 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055397.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84797666 84805319 + Tnks1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0055398.1 MGP_C3HHeJ_G0025651.1 mouse_genomes_project 2 84804920 84821477 + MGP_C3HHeJ_P0055398 Tnks1bp1 protein_coding protein_coding MGP_C3HHeJ_T0055078.1 MGP_C3HHeJ_G0025578.1 mouse_genomes_project 2 74197375 74200067 + MGP_C3HHeJ_P0055078 Hoxd12 protein_coding protein_coding MGP_C3HHeJ_T0052595.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21948916 21964245 + MGP_C3HHeJ_P0052595 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052596.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21948919 21951473 + Il1rn protein_coding retained_intron MGP_C3HHeJ_T0052597.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21948919 21962208 + MGP_C3HHeJ_P0052597 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052598.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21957351 21962558 + MGP_C3HHeJ_P0052598 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052599.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21957373 21963687 + MGP_C3HHeJ_P0052599 Il1rn protein_coding protein_coding MGP_C3HHeJ_T0052600.1 MGP_C3HHeJ_G0025142.1 mouse_genomes_project 2 21957411 21959105 + Il1rn protein_coding processed_transcript MGP_C3HHeJ_T0013341.1 MGP_C3HHeJ_G0011445.1 mouse_genomes_project 2 31801920 31804168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057433.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133421903 133427250 + Ap5s1 protein_coding processed_transcript MGP_C3HHeJ_T0057434.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133421911 133429668 + MGP_C3HHeJ_P0057434 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057435.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426172 133429934 + Ap5s1 protein_coding processed_transcript MGP_C3HHeJ_T0057436.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426199 133429526 + Ap5s1 protein_coding processed_transcript MGP_C3HHeJ_T0057437.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426226 133430443 + MGP_C3HHeJ_P0057437 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057438.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426242 133430446 + MGP_C3HHeJ_P0057438 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057439.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426242 133430446 + MGP_C3HHeJ_P0057439 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0057440.1 MGP_C3HHeJ_G0026246.1 mouse_genomes_project 2 133426406 133429796 + MGP_C3HHeJ_P0057440 Ap5s1 protein_coding protein_coding MGP_C3HHeJ_T0099181.1 MGP_C3HHeJ_G0037375.1 mouse_genomes_project 2 22995783 22995878 + Gm25220 snRNA snRNA MGP_C3HHeJ_T0007297.1 MGP_C3HHeJ_G0005978.1 mouse_genomes_project 2 166317571 166318646 + Gm14246 lincRNA lincRNA MGP_C3HHeJ_T0052018.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 429789 449006 - MGP_C3HHeJ_P0052018 Suv39h2 protein_coding protein_coding MGP_C3HHeJ_T0052019.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 431554 448935 - MGP_C3HHeJ_P0052019 Suv39h2 protein_coding protein_coding MGP_C3HHeJ_T0052020.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 431555 448394 - MGP_C3HHeJ_P0052020 Suv39h2 protein_coding protein_coding MGP_C3HHeJ_T0052021.1 MGP_C3HHeJ_G0025041.1 mouse_genomes_project 2 431577 448944 - MGP_C3HHeJ_P0052021 Suv39h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0017619.1 MGP_C3HHeJ_G0015219.1 mouse_genomes_project 2 115929582 115974159 + Gm13972 processed_transcript processed_transcript MGP_C3HHeJ_T0007070.1 MGP_C3HHeJ_G0005795.1 mouse_genomes_project 2 21934567 21935100 + Gm13411 lincRNA lincRNA MGP_C3HHeJ_T0055405.1 MGP_C3HHeJ_G0025656.1 mouse_genomes_project 2 85172963 85173893 - MGP_C3HHeJ_P0055405 Olfr992 protein_coding protein_coding MGP_C3HHeJ_T0053576.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782636 28799352 + MGP_C3HHeJ_P0053576 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053577.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782751 28799336 + MGP_C3HHeJ_P0053577 Ntmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053578.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782752 28798704 + MGP_C3HHeJ_P0053578 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053579.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782767 28791914 + Ntmt1 protein_coding processed_transcript MGP_C3HHeJ_T0053580.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782804 28792378 + Ntmt1 protein_coding processed_transcript MGP_C3HHeJ_T0053581.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28782923 28798871 + MGP_C3HHeJ_P0053581 Ntmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053582.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28783000 28797009 + MGP_C3HHeJ_P0053582 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053583.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28794456 28797129 + MGP_C3HHeJ_P0053583 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0053584.1 MGP_C3HHeJ_G0025308.1 mouse_genomes_project 2 28796162 28798878 + MGP_C3HHeJ_P0053584 Ntmt1 protein_coding protein_coding MGP_C3HHeJ_T0055423.1 MGP_C3HHeJ_G0025674.1 mouse_genomes_project 2 85683886 85684822 + MGP_C3HHeJ_P0055423 Olfr1023 protein_coding protein_coding MGP_C3HHeJ_T0099184.1 MGP_C3HHeJ_G0037378.1 mouse_genomes_project 2 27844899 27844996 - Gm23865 snRNA snRNA MGP_C3HHeJ_T0013575.1 MGP_C3HHeJ_G0011679.1 mouse_genomes_project 2 112914436 112915647 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004112.1 MGP_C3HHeJ_G0003629.1 mouse_genomes_project 2 178448054 178509694 - Gm10714 antisense antisense MGP_C3HHeJ_T0004113.1 MGP_C3HHeJ_G0003629.1 mouse_genomes_project 2 178448576 178448905 - Gm10714 antisense antisense MGP_C3HHeJ_T0013389.1 MGP_C3HHeJ_G0011493.1 mouse_genomes_project 2 49216154 49217018 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010393.1 MGP_C3HHeJ_G0008526.1 mouse_genomes_project 2 166749309 166749434 + Gm22174 miRNA miRNA MGP_C3HHeJ_T0101897.1 MGP_C3HHeJ_G0039862.1 mouse_genomes_project 2 86352557 86353500 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001042.1 MGP_C3HHeJ_G0000979.1 mouse_genomes_project 2 36855956 36858552 - TEC TEC MGP_C3HHeJ_T0007299.1 MGP_C3HHeJ_G0005980.1 mouse_genomes_project 2 166780012 166802014 + Gm11454 lincRNA lincRNA MGP_C3HHeJ_T0059210.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287045 177299057 + MGP_C3HHeJ_P0059210 Rbm38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059211.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287059 177299872 + Rbm38 protein_coding retained_intron MGP_C3HHeJ_T0059212.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287186 177298953 + MGP_C3HHeJ_P0059212 Rbm38 protein_coding protein_coding MGP_C3HHeJ_T0059213.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287257 177298794 + MGP_C3HHeJ_P0059213 Rbm38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059214.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177287584 177298853 + MGP_C3HHeJ_P0059214 Rbm38 protein_coding protein_coding MGP_C3HHeJ_T0059215.1 MGP_C3HHeJ_G0026670.1 mouse_genomes_project 2 177288195 177299844 + Rbm38 protein_coding retained_intron MGP_C3HHeJ_T0013431.1 MGP_C3HHeJ_G0011535.1 mouse_genomes_project 2 63673070 63673848 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059175.1 MGP_C3HHeJ_G0026654.1 mouse_genomes_project 2 174625706 174633124 + MGP_C3HHeJ_P0059175 Pfdn4 protein_coding protein_coding MGP_C3HHeJ_T0059176.1 MGP_C3HHeJ_G0026654.1 mouse_genomes_project 2 174625707 174633337 + MGP_C3HHeJ_P0059176 Pfdn4 protein_coding protein_coding MGP_C3HHeJ_T0013660.1 MGP_C3HHeJ_G0011764.1 mouse_genomes_project 2 150918158 150918652 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059471.1 MGP_C3HHeJ_G0026731.1 mouse_genomes_project 2 185821999 185824862 + MGP_C3HHeJ_P0059471 BC051628 protein_coding protein_coding MGP_C3HHeJ_T0059472.1 MGP_C3HHeJ_G0026731.1 mouse_genomes_project 2 185822025 185824457 + MGP_C3HHeJ_P0059472 BC051628 protein_coding protein_coding MGP_C3HHeJ_T0003875.1 MGP_C3HHeJ_G0003458.1 mouse_genomes_project 2 29930331 29935815 - Gm13441 antisense antisense MGP_C3HHeJ_T0054466.1 MGP_C3HHeJ_G0025466.1 mouse_genomes_project 2 51162177 51188542 - MGP_C3HHeJ_P0054466 Arl5a protein_coding unknown_likely_coding MGP_C3HHeJ_T0054467.1 MGP_C3HHeJ_G0025466.1 mouse_genomes_project 2 51162178 51188808 - MGP_C3HHeJ_P0054467 Arl5a protein_coding protein_coding MGP_C3HHeJ_T0054468.1 MGP_C3HHeJ_G0025466.1 mouse_genomes_project 2 51166620 51176614 - Arl5a protein_coding retained_intron MGP_C3HHeJ_T0013547.1 MGP_C3HHeJ_G0011651.1 mouse_genomes_project 2 104537490 104538222 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013619.1 MGP_C3HHeJ_G0011723.1 mouse_genomes_project 2 134930007 134930462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059221.1 MGP_C3HHeJ_G0026673.1 mouse_genomes_project 2 177494486 177506799 - MGP_C3HHeJ_P0059221 Zbp1 protein_coding protein_coding MGP_C3HHeJ_T0059222.1 MGP_C3HHeJ_G0026673.1 mouse_genomes_project 2 177494489 177506773 - Zbp1 protein_coding retained_intron MGP_C3HHeJ_T0059223.1 MGP_C3HHeJ_G0026673.1 mouse_genomes_project 2 177501609 177506786 - MGP_C3HHeJ_P0059223 Zbp1 protein_coding protein_coding MGP_C3HHeJ_T0013477.1 MGP_C3HHeJ_G0011581.1 mouse_genomes_project 2 80231837 80232119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013529.1 MGP_C3HHeJ_G0011633.1 mouse_genomes_project 2 97548606 97549276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099217.1 MGP_C3HHeJ_G0037411.1 mouse_genomes_project 2 135293343 135293511 + Gm25704 snRNA snRNA MGP_C3HHeJ_T0007258.1 MGP_C3HHeJ_G0005946.1 mouse_genomes_project 2 140086790 140264136 + Gm14064 lincRNA lincRNA MGP_C3HHeJ_T0010367.1 MGP_C3HHeJ_G0008500.1 mouse_genomes_project 2 123737078 123737152 + Gm27325 miRNA miRNA MGP_C3HHeJ_T0000992.1 MGP_C3HHeJ_G0000929.1 mouse_genomes_project 2 7244172 7245854 + TEC TEC MGP_C3HHeJ_T0058691.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166669032 166699656 + MGP_C3HHeJ_P0058691 Ift52 protein_coding protein_coding MGP_C3HHeJ_T0058692.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166669169 166685374 + MGP_C3HHeJ_P0058692 Ift52 protein_coding protein_coding MGP_C3HHeJ_T0058693.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166669197 166676671 + Ift52 protein_coding processed_transcript MGP_C3HHeJ_T0058694.1 MGP_C3HHeJ_G0026533.1 mouse_genomes_project 2 166675572 166682533 + Ift52 protein_coding processed_transcript MGP_C3HHeJ_T0001050.1 MGP_C3HHeJ_G0000987.1 mouse_genomes_project 2 68192096 68195317 + TEC TEC MGP_C3HHeJ_T0052708.1 MGP_C3HHeJ_G0025156.1 mouse_genomes_project 2 22841546 22845467 - MGP_C3HHeJ_P0052708 Tor4a protein_coding protein_coding MGP_C3HHeJ_T0052709.1 MGP_C3HHeJ_G0025156.1 mouse_genomes_project 2 22843637 22845340 - MGP_C3HHeJ_P0052709 Tor4a protein_coding protein_coding MGP_C3HHeJ_T0052710.1 MGP_C3HHeJ_G0025156.1 mouse_genomes_project 2 22844372 22845352 - MGP_C3HHeJ_P0052710 Tor4a protein_coding protein_coding MGP_C3HHeJ_T0056317.1 MGP_C3HHeJ_G0025977.1 mouse_genomes_project 2 112291163 112292517 + MGP_C3HHeJ_P0056317 protein_coding protein_coding MGP_C3HHeJ_T0052679.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699069 22707592 + MGP_C3HHeJ_P0052679 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052680.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699087 22705273 + MGP_C3HHeJ_P0052680 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052681.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699093 22707591 + MGP_C3HHeJ_P0052681 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052682.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699098 22707592 + MGP_C3HHeJ_P0052682 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052683.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699117 22701590 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052684.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699121 22699811 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052685.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699127 22707592 + MGP_C3HHeJ_P0052685 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052686.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699127 22707592 + MGP_C3HHeJ_P0052686 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052687.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699139 22703767 + MGP_C3HHeJ_P0052687 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052688.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699149 22707592 + MGP_C3HHeJ_P0052688 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052689.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699170 22707592 + MGP_C3HHeJ_P0052689 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052690.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699182 22707592 + MGP_C3HHeJ_P0052690 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052691.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22699182 22707339 + MGP_C3HHeJ_P0052691 Nsmf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052692.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22700594 22702058 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052693.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22701857 22707592 + MGP_C3HHeJ_P0052693 Nsmf protein_coding protein_coding MGP_C3HHeJ_T0052694.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22702286 22704370 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052695.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22704846 22705818 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0052696.1 MGP_C3HHeJ_G0025152.1 mouse_genomes_project 2 22705539 22706420 + Nsmf protein_coding retained_intron MGP_C3HHeJ_T0007156.1 MGP_C3HHeJ_G0005863.1 mouse_genomes_project 2 74280971 74281614 + Gm14426 lincRNA lincRNA MGP_C3HHeJ_T0007335.1 MGP_C3HHeJ_G0006010.1 mouse_genomes_project 2 174157796 174167209 - A630075F10Rik lincRNA lincRNA MGP_C3HHeJ_T0010379.1 MGP_C3HHeJ_G0008512.1 mouse_genomes_project 2 148634367 148634555 + Gm25026 miRNA miRNA MGP_C3HHeJ_T0013692.1 MGP_C3HHeJ_G0011796.1 mouse_genomes_project 2 160188395 160202690 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052329.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10610781 10832196 - MGP_C3HHeJ_P0052329 Cubn protein_coding unknown_likely_coding MGP_C3HHeJ_T0052330.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10611867 10832196 - MGP_C3HHeJ_P0052330 Cubn protein_coding protein_coding MGP_C3HHeJ_T0052331.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10761848 10796303 - Cubn protein_coding retained_intron MGP_C3HHeJ_T0052332.1 MGP_C3HHeJ_G0025088.1 mouse_genomes_project 2 10797315 10800156 - Cubn protein_coding retained_intron MGP_C3HHeJ_T0013709.1 MGP_C3HHeJ_G0011813.1 mouse_genomes_project 2 168225335 168226060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007271.1 MGP_C3HHeJ_G0005956.1 mouse_genomes_project 2 152132181 152137039 + Gm14135 lincRNA lincRNA MGP_C3HHeJ_T0057925.1 MGP_C3HHeJ_G0026365.1 mouse_genomes_project 2 154957246 154992400 + MGP_C3HHeJ_P0057925 Angpt4 protein_coding protein_coding MGP_C3HHeJ_T0052494.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18402443 18525696 - MGP_C3HHeJ_P0052494 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052495.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18402443 18524536 - MGP_C3HHeJ_P0052495 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052496.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18402464 18524535 - MGP_C3HHeJ_P0052496 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052497.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18403118 18525341 - MGP_C3HHeJ_P0052497 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052498.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404476 18407772 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052499.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404567 18439290 - MGP_C3HHeJ_P0052499 Arhgap21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052500.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404768 18414413 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052501.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18404904 18409156 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052502.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18407565 18410230 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052503.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18407566 18414406 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052504.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18413439 18426910 - MGP_C3HHeJ_P0052504 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052505.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18413953 18415627 - Arhgap21 protein_coding retained_intron MGP_C3HHeJ_T0052506.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18442418 18470855 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052507.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18445960 18500369 - MGP_C3HHeJ_P0052507 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052508.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18470960 18525440 - MGP_C3HHeJ_P0052508 Arhgap21 protein_coding protein_coding MGP_C3HHeJ_T0052509.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18524412 18525299 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052510.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18524437 18525647 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0052511.1 MGP_C3HHeJ_G0025119.1 mouse_genomes_project 2 18524504 18525695 - Arhgap21 protein_coding processed_transcript MGP_C3HHeJ_T0055417.1 MGP_C3HHeJ_G0025668.1 mouse_genomes_project 2 85579793 85580732 + MGP_C3HHeJ_P0055417 Olfr1015 protein_coding protein_coding MGP_C3HHeJ_T0101904.1 MGP_C3HHeJ_G0039869.1 mouse_genomes_project 2 87319907 87321268 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052619.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22226418 22384095 - MGP_C3HHeJ_P0052619 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052620.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22226425 22384072 - MGP_C3HHeJ_P0052620 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052621.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22228906 22383990 - MGP_C3HHeJ_P0052621 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052622.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22228910 22230066 - MGP_C3HHeJ_P0052622 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052623.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22229101 22383990 - MGP_C3HHeJ_P0052623 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052624.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22229101 22383990 - MGP_C3HHeJ_P0052624 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052625.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22230522 22240854 - MGP_C3HHeJ_P0052625 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052626.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22232463 22259529 - MGP_C3HHeJ_P0052626 Cacna1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052627.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22245131 22254557 - MGP_C3HHeJ_P0052627 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0052628.1 MGP_C3HHeJ_G0025145.1 mouse_genomes_project 2 22301488 22307857 - MGP_C3HHeJ_P0052628 Cacna1b protein_coding protein_coding MGP_C3HHeJ_T0101524.1 MGP_C3HHeJ_G0026739.1 mouse_genomes_project 2 185991292 185994651 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101525.1 MGP_C3HHeJ_G0026739.1 mouse_genomes_project 2 185991453 185994264 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0053134.1 MGP_C3HHeJ_G0025236.1 mouse_genomes_project 2 24666886 24680756 - MGP_C3HHeJ_P0053134 Surf4 protein_coding protein_coding MGP_C3HHeJ_T0053135.1 MGP_C3HHeJ_G0025236.1 mouse_genomes_project 2 24668808 24680230 - MGP_C3HHeJ_P0053135 Surf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053136.1 MGP_C3HHeJ_G0025236.1 mouse_genomes_project 2 24671816 24680609 - MGP_C3HHeJ_P0053136 Surf4 protein_coding protein_coding MGP_C3HHeJ_T0059093.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171894848 171940526 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059094.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895118 171945174 + MGP_C3HHeJ_P0059094 Ptpn1 protein_coding protein_coding MGP_C3HHeJ_T0059095.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895163 171932403 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059096.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895163 171945174 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059097.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895186 171928305 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059098.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171895186 171932351 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0059099.1 MGP_C3HHeJ_G0026637.1 mouse_genomes_project 2 171915122 171929685 + Ptpn1 protein_coding processed_transcript MGP_C3HHeJ_T0007118.1 MGP_C3HHeJ_G0005832.1 mouse_genomes_project 2 50070649 50074648 - lincRNA lincRNA MGP_C3HHeJ_T0100473.1 MGP_C3HHeJ_G0038667.1 mouse_genomes_project 2 104972821 104972951 - Gm22501 snoRNA snoRNA MGP_C3HHeJ_T0001025.1 MGP_C3HHeJ_G0000962.1 mouse_genomes_project 2 21054404 21055922 + TEC TEC MGP_C3HHeJ_T0100513.1 MGP_C3HHeJ_G0038707.1 mouse_genomes_project 2 170969330 170969419 + Gm23201 snoRNA snoRNA MGP_C3HHeJ_T0057475.1 MGP_C3HHeJ_G0026251.1 mouse_genomes_project 2 133792646 133809109 - MGP_C3HHeJ_P0057475 Adra1d protein_coding protein_coding MGP_C3HHeJ_T0011394.1 MGP_C3HHeJ_G0009527.1 mouse_genomes_project 2 18767714 18767891 - Gm23007 misc_RNA misc_RNA MGP_C3HHeJ_T0053892.1 MGP_C3HHeJ_G0025354.1 mouse_genomes_project 2 30845710 30847969 - 6330409D20Rik protein_coding processed_transcript MGP_C3HHeJ_T0053893.1 MGP_C3HHeJ_G0025354.1 mouse_genomes_project 2 30845710 30853837 - MGP_C3HHeJ_P0053893 6330409D20Rik protein_coding protein_coding MGP_C3HHeJ_T0054495.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296472 53980588 + MGP_C3HHeJ_P0054495 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054496.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296542 53980588 + MGP_C3HHeJ_P0054496 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054497.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296542 53980588 + MGP_C3HHeJ_P0054497 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054498.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53296646 53584631 + MGP_C3HHeJ_P0054498 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0054499.1 MGP_C3HHeJ_G0025473.1 mouse_genomes_project 2 53391545 53975208 + MGP_C3HHeJ_P0054499 Galnt13 protein_coding protein_coding MGP_C3HHeJ_T0003920.1 MGP_C3HHeJ_G0003493.1 mouse_genomes_project 2 66528472 66629464 - Gm13599 antisense antisense MGP_C3HHeJ_T0057987.1 MGP_C3HHeJ_G0026394.1 mouse_genomes_project 2 155818590 155819749 + MGP_C3HHeJ_P0057987 Id1 protein_coding protein_coding MGP_C3HHeJ_T0057988.1 MGP_C3HHeJ_G0026394.1 mouse_genomes_project 2 155818590 155819749 + MGP_C3HHeJ_P0057988 Id1 protein_coding protein_coding MGP_C3HHeJ_T0013436.1 MGP_C3HHeJ_G0011540.1 mouse_genomes_project 2 65630894 65631266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098389.1 MGP_C3HHeJ_G0036595.1 mouse_genomes_project 2 1089032 1092644 + Gm38085 sense_intronic sense_intronic MGP_C3HHeJ_T0007351.1 MGP_C3HHeJ_G0006025.1 mouse_genomes_project 2 185415711 185490468 - Gm14342 lincRNA lincRNA MGP_C3HHeJ_T0054114.1 MGP_C3HHeJ_G0025388.1 mouse_genomes_project 2 33607687 33632262 - MGP_C3HHeJ_P0054114 4930402F06Rik protein_coding protein_coding MGP_C3HHeJ_T0054115.1 MGP_C3HHeJ_G0025388.1 mouse_genomes_project 2 33607707 33632144 - MGP_C3HHeJ_P0054115 4930402F06Rik protein_coding protein_coding MGP_C3HHeJ_T0058602.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162134470 + Actr5 protein_coding retained_intron MGP_C3HHeJ_T0058603.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162124038 + Actr5 protein_coding retained_intron MGP_C3HHeJ_T0058604.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162134470 + MGP_C3HHeJ_P0058604 Actr5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058605.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162119768 162134483 + MGP_C3HHeJ_P0058605 Actr5 protein_coding protein_coding MGP_C3HHeJ_T0058606.1 MGP_C3HHeJ_G0026515.1 mouse_genomes_project 2 162126509 162131969 + Actr5 protein_coding processed_transcript MGP_C3HHeJ_T0003927.1 MGP_C3HHeJ_G0003499.1 mouse_genomes_project 2 69876476 69882185 - Erich2os antisense antisense MGP_C3HHeJ_T0057785.1 MGP_C3HHeJ_G0026321.1 mouse_genomes_project 2 149889864 149891991 - MGP_C3HHeJ_P0057785 Nkx2-4 protein_coding protein_coding MGP_C3HHeJ_T0058263.1 MGP_C3HHeJ_G0026459.1 mouse_genomes_project 2 159027256 159027313 - MGP_C3HHeJ_P0058263 Gm17581 protein_coding protein_coding MGP_C3HHeJ_T0057324.1 MGP_C3HHeJ_G0026222.1 mouse_genomes_project 2 132580752 132582182 + MGP_C3HHeJ_P0057324 Tmem239 protein_coding protein_coding MGP_C3HHeJ_T0058118.1 MGP_C3HHeJ_G0026428.1 mouse_genomes_project 2 157407581 157424665 + MGP_C3HHeJ_P0058118 Bpifb5 protein_coding protein_coding MGP_C3HHeJ_T0017580.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91240796 91249939 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017581.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91242793 91250340 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017582.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91242793 91250132 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017583.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91243074 91249677 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0017584.1 MGP_C3HHeJ_G0015203.1 mouse_genomes_project 2 91246118 91249750 - Ptpmt1 processed_transcript processed_transcript MGP_C3HHeJ_T0053560.1 MGP_C3HHeJ_G0025305.1 mouse_genomes_project 2 28426227 28428908 - MGP_C3HHeJ_P0053560 Ier5l protein_coding protein_coding MGP_C3HHeJ_T0099218.1 MGP_C3HHeJ_G0037412.1 mouse_genomes_project 2 135632898 135632957 + Gm27449 snRNA snRNA MGP_C3HHeJ_T0058111.1 MGP_C3HHeJ_G0026425.1 mouse_genomes_project 2 157332667 157338990 + MGP_C3HHeJ_P0058111 Bpifa1 protein_coding protein_coding MGP_C3HHeJ_T0058112.1 MGP_C3HHeJ_G0026425.1 mouse_genomes_project 2 157332686 157334945 + Bpifa1 protein_coding processed_transcript MGP_C3HHeJ_T0058113.1 MGP_C3HHeJ_G0026425.1 mouse_genomes_project 2 157334118 157337516 + Bpifa1 protein_coding processed_transcript MGP_C3HHeJ_T0013348.1 MGP_C3HHeJ_G0011452.1 mouse_genomes_project 2 33733369 33733676 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017538.1 MGP_C3HHeJ_G0015173.1 mouse_genomes_project 2 28682583 28690457 - Gm14488 processed_transcript processed_transcript MGP_C3HHeJ_T0017539.1 MGP_C3HHeJ_G0015173.1 mouse_genomes_project 2 28682586 28687528 - Gm14488 processed_transcript retained_intron MGP_C3HHeJ_T0055607.1 MGP_C3HHeJ_G0025832.1 mouse_genomes_project 2 89984346 89985596 - MGP_C3HHeJ_P0055607 protein_coding protein_coding MGP_C3HHeJ_T0053455.1 MGP_C3HHeJ_G0025291.1 mouse_genomes_project 2 28112635 28115212 + MGP_C3HHeJ_P0053455 Endog protein_coding protein_coding MGP_C3HHeJ_T0055532.1 MGP_C3HHeJ_G0025770.1 mouse_genomes_project 2 88149795 88150740 - MGP_C3HHeJ_P0055532 Olfr1162 protein_coding protein_coding MGP_C3HHeJ_T0055533.1 MGP_C3HHeJ_G0025770.1 mouse_genomes_project 2 88149795 88151230 - MGP_C3HHeJ_P0055533 Olfr1162 protein_coding protein_coding MGP_C3HHeJ_T0004036.1 MGP_C3HHeJ_G0003569.1 mouse_genomes_project 2 145570274 145570882 + Kif16bos antisense antisense MGP_C3HHeJ_T0059408.1 MGP_C3HHeJ_G0026721.1 mouse_genomes_project 2 185530611 185535596 + Birc7 protein_coding retained_intron MGP_C3HHeJ_T0059409.1 MGP_C3HHeJ_G0026721.1 mouse_genomes_project 2 185530611 185535599 + MGP_C3HHeJ_P0059409 Birc7 protein_coding protein_coding MGP_C3HHeJ_T0010260.1 MGP_C3HHeJ_G0008393.1 mouse_genomes_project 2 7694622 7694703 + Mir669d-2 miRNA miRNA MGP_C3HHeJ_T0003854.1 MGP_C3HHeJ_G0003443.1 mouse_genomes_project 2 24120274 24126007 + Gm13563 antisense antisense MGP_C3HHeJ_T0003855.1 MGP_C3HHeJ_G0003443.1 mouse_genomes_project 2 24124300 24126543 + Gm13563 antisense antisense MGP_C3HHeJ_T0003856.1 MGP_C3HHeJ_G0003443.1 mouse_genomes_project 2 24126205 24127767 + Gm13563 antisense antisense MGP_C3HHeJ_T0007301.1 MGP_C3HHeJ_G0005982.1 mouse_genomes_project 2 168278362 168288730 + Gm14317 lincRNA lincRNA MGP_C3HHeJ_T0055529.1 MGP_C3HHeJ_G0025767.1 mouse_genomes_project 2 88105123 88106970 - MGP_C3HHeJ_P0055529 protein_coding protein_coding MGP_C3HHeJ_T0053563.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28769705 28778571 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053564.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770237 28776643 - MGP_C3HHeJ_P0053564 1700001O22Rik protein_coding protein_coding MGP_C3HHeJ_T0053565.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770404 28771601 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053566.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770499 28778597 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053567.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770502 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053568.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770509 28775937 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053569.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770516 28778593 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053570.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770540 28778579 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053571.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770593 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053572.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28770610 28771812 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053573.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28771044 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053574.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28771118 28778580 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0053575.1 MGP_C3HHeJ_G0025307.1 mouse_genomes_project 2 28772189 28778559 - 1700001O22Rik protein_coding processed_transcript MGP_C3HHeJ_T0003991.1 MGP_C3HHeJ_G0003536.1 mouse_genomes_project 2 116902544 116928893 - Gm13977 antisense antisense MGP_C3HHeJ_T0054191.1 MGP_C3HHeJ_G0025419.1 mouse_genomes_project 2 35359046 35362558 + MGP_C3HHeJ_P0054191 Olfr360 protein_coding protein_coding MGP_C3HHeJ_T0054192.1 MGP_C3HHeJ_G0025419.1 mouse_genomes_project 2 35361604 35362558 + MGP_C3HHeJ_P0054192 Olfr360 protein_coding protein_coding MGP_C3HHeJ_T0007146.1 MGP_C3HHeJ_G0005855.1 mouse_genomes_project 2 73418681 73427960 + Gm10822 lincRNA lincRNA MGP_C3HHeJ_T0056941.1 MGP_C3HHeJ_G0026125.1 mouse_genomes_project 2 123867796 123873187 + MGP_C3HHeJ_P0056941 B2m protein_coding protein_coding MGP_C3HHeJ_T0054770.1 MGP_C3HHeJ_G0025518.1 mouse_genomes_project 2 65870363 65983133 - MGP_C3HHeJ_P0054770 Scn7a protein_coding protein_coding MGP_C3HHeJ_T0058700.1 MGP_C3HHeJ_G0026535.1 mouse_genomes_project 2 166743516 166744338 - MGP_C3HHeJ_P0058700 Gtsf1l protein_coding protein_coding MGP_C3HHeJ_T0011396.1 MGP_C3HHeJ_G0009529.1 mouse_genomes_project 2 22223896 22224221 + Gm25455 misc_RNA misc_RNA MGP_C3HHeJ_T0013574.1 MGP_C3HHeJ_G0011678.1 mouse_genomes_project 2 112851382 112851538 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053691.1 MGP_C3HHeJ_G0025325.1 mouse_genomes_project 2 29843365 29848967 - MGP_C3HHeJ_P0053691 Qrfp protein_coding protein_coding MGP_C3HHeJ_T0052629.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22410864 22518111 - MGP_C3HHeJ_P0052629 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052630.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22411212 22548235 - MGP_C3HHeJ_P0052630 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052631.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22411212 22426423 - MGP_C3HHeJ_P0052631 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052632.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22411212 22548235 - MGP_C3HHeJ_P0052632 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052633.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22412019 22548277 - MGP_C3HHeJ_P0052633 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052634.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22425300 22445241 - Ehmt1 protein_coding retained_intron MGP_C3HHeJ_T0052635.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22426337 22463844 - MGP_C3HHeJ_P0052635 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052636.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22426395 22427350 - Ehmt1 protein_coding processed_transcript MGP_C3HHeJ_T0052637.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22443177 22548251 - MGP_C3HHeJ_P0052637 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052638.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22444821 22478996 - MGP_C3HHeJ_P0052638 Ehmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052639.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22459354 22548240 - Ehmt1 protein_coding retained_intron MGP_C3HHeJ_T0052640.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22472279 22503959 - MGP_C3HHeJ_P0052640 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052641.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22489642 22510791 - MGP_C3HHeJ_P0052641 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052642.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22489711 22548268 - MGP_C3HHeJ_P0052642 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0052643.1 MGP_C3HHeJ_G0025146.1 mouse_genomes_project 2 22490308 22548259 - MGP_C3HHeJ_P0052643 Ehmt1 protein_coding protein_coding MGP_C3HHeJ_T0056271.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110629213 110682570 + MGP_C3HHeJ_P0056271 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056272.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110630410 110682570 + MGP_C3HHeJ_P0056272 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056273.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110630410 110682570 + MGP_C3HHeJ_P0056273 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056274.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110630410 110682570 + MGP_C3HHeJ_P0056274 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056275.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110631545 110682570 + MGP_C3HHeJ_P0056275 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056276.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110646986 110682570 + MGP_C3HHeJ_P0056276 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056277.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110647576 110682570 + MGP_C3HHeJ_P0056277 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056278.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110648092 110682570 + MGP_C3HHeJ_P0056278 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056279.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110648938 110682570 + MGP_C3HHeJ_P0056279 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056280.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110648998 110682570 + MGP_C3HHeJ_P0056280 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0056281.1 MGP_C3HHeJ_G0025960.1 mouse_genomes_project 2 110664873 110682570 + MGP_C3HHeJ_P0056281 Bdnf protein_coding protein_coding MGP_C3HHeJ_T0055485.1 MGP_C3HHeJ_G0025733.1 mouse_genomes_project 2 87449721 87450702 + MGP_C3HHeJ_P0055485 Olfr1122 protein_coding protein_coding MGP_C3HHeJ_T0057902.1 MGP_C3HHeJ_G0026359.1 mouse_genomes_project 2 154610969 154628348 + MGP_C3HHeJ_P0057902 Sdcbp2 protein_coding protein_coding MGP_C3HHeJ_T0055534.1 MGP_C3HHeJ_G0025771.1 mouse_genomes_project 2 88171028 88171979 - MGP_C3HHeJ_P0055534 Olfr1163 protein_coding protein_coding MGP_C3HHeJ_T0013376.1 MGP_C3HHeJ_G0011480.1 mouse_genomes_project 2 43854144 43854378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010280.1 MGP_C3HHeJ_G0008413.1 mouse_genomes_project 2 7717504 7717584 + Mir466g miRNA miRNA MGP_C3HHeJ_T0057965.1 MGP_C3HHeJ_G0026380.1 mouse_genomes_project 2 155549754 155552626 + MGP_C3HHeJ_P0057965 Defb20 protein_coding protein_coding MGP_C3HHeJ_T0013271.1 MGP_C3HHeJ_G0011375.1 mouse_genomes_project 2 2188169 2188995 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003888.1 MGP_C3HHeJ_G0003468.1 mouse_genomes_project 2 32475504 32492585 + C79798 antisense antisense MGP_C3HHeJ_T0013267.1 MGP_C3HHeJ_G0011371.1 mouse_genomes_project 2 1063718 1064282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053534.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28351477 28366764 - MGP_C3HHeJ_P0053534 Crat protein_coding protein_coding MGP_C3HHeJ_T0053535.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28351482 28357691 - Crat protein_coding processed_transcript MGP_C3HHeJ_T0053536.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28352107 28366806 - MGP_C3HHeJ_P0053536 Crat protein_coding protein_coding MGP_C3HHeJ_T0053537.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28353504 28356299 - MGP_C3HHeJ_P0053537 Crat protein_coding protein_coding MGP_C3HHeJ_T0053538.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28353584 28366517 - MGP_C3HHeJ_P0053538 Crat protein_coding protein_coding MGP_C3HHeJ_T0053539.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28353643 28355972 - MGP_C3HHeJ_P0053539 Crat protein_coding protein_coding MGP_C3HHeJ_T0053540.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28359094 28366301 - MGP_C3HHeJ_P0053540 Crat protein_coding protein_coding MGP_C3HHeJ_T0053541.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28359139 28366541 - MGP_C3HHeJ_P0053541 Crat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053542.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28364041 28365332 - Crat protein_coding processed_transcript MGP_C3HHeJ_T0053543.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28364137 28366511 - MGP_C3HHeJ_P0053543 Crat protein_coding protein_coding MGP_C3HHeJ_T0053544.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28364158 28366326 - MGP_C3HHeJ_P0053544 Crat protein_coding protein_coding MGP_C3HHeJ_T0053545.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28365052 28366593 - Crat protein_coding processed_transcript MGP_C3HHeJ_T0053546.1 MGP_C3HHeJ_G0025303.1 mouse_genomes_project 2 28365587 28366400 - MGP_C3HHeJ_P0053546 Crat protein_coding protein_coding MGP_C3HHeJ_T0013665.1 MGP_C3HHeJ_G0011769.1 mouse_genomes_project 2 153320752 153321147 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017658.1 MGP_C3HHeJ_G0015237.1 mouse_genomes_project 2 141751075 142221905 - processed_transcript processed_transcript MGP_C3HHeJ_T0013297.1 MGP_C3HHeJ_G0011401.1 mouse_genomes_project 2 15219735 15220886 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055556.1 MGP_C3HHeJ_G0025792.1 mouse_genomes_project 2 88916538 88918922 + MGP_C3HHeJ_P0055556 Olfr1201 protein_coding protein_coding MGP_C3HHeJ_T0055617.1 MGP_C3HHeJ_G0025839.1 mouse_genomes_project 2 90154461 90157891 + MGP_C3HHeJ_P0055617 Olfr1258 protein_coding protein_coding MGP_C3HHeJ_T0055618.1 MGP_C3HHeJ_G0025839.1 mouse_genomes_project 2 90156955 90157891 + MGP_C3HHeJ_P0055618 Olfr1258 protein_coding protein_coding MGP_C3HHeJ_T0053137.1 MGP_C3HHeJ_G0025237.1 mouse_genomes_project 2 24680874 24690147 + MGP_C3HHeJ_P0053137 Stkld1 protein_coding protein_coding MGP_C3HHeJ_T0053138.1 MGP_C3HHeJ_G0025237.1 mouse_genomes_project 2 24680896 24705265 + MGP_C3HHeJ_P0053138 Stkld1 protein_coding protein_coding MGP_C3HHeJ_T0053139.1 MGP_C3HHeJ_G0025237.1 mouse_genomes_project 2 24682150 24705160 + MGP_C3HHeJ_P0053139 Stkld1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0013278.1 MGP_C3HHeJ_G0011382.1 mouse_genomes_project 2 8119069 8119880 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054307.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37555925 37589118 - MGP_C3HHeJ_P0054307 Ppp6c protein_coding protein_coding MGP_C3HHeJ_T0054308.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37558305 37588949 - MGP_C3HHeJ_P0054308 Ppp6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054309.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37558348 37588987 - MGP_C3HHeJ_P0054309 Ppp6c protein_coding protein_coding MGP_C3HHeJ_T0054310.1 MGP_C3HHeJ_G0025445.1 mouse_genomes_project 2 37559068 37562562 - Ppp6c protein_coding processed_transcript MGP_C3HHeJ_T0057445.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480242 133501637 + Pank2 protein_coding processed_transcript MGP_C3HHeJ_T0057446.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480247 133518239 + MGP_C3HHeJ_P0057446 Pank2 protein_coding protein_coding MGP_C3HHeJ_T0057447.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480272 133515124 + MGP_C3HHeJ_P0057447 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057448.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480315 133518237 + MGP_C3HHeJ_P0057448 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057449.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480543 133514967 + MGP_C3HHeJ_P0057449 Pank2 protein_coding protein_coding MGP_C3HHeJ_T0057450.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133480586 133515327 + Pank2 protein_coding processed_transcript MGP_C3HHeJ_T0057451.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133492278 133512157 + MGP_C3HHeJ_P0057451 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057452.1 MGP_C3HHeJ_G0026248.1 mouse_genomes_project 2 133492386 133514944 + MGP_C3HHeJ_P0057452 Pank2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003829.1 MGP_C3HHeJ_G0003423.1 mouse_genomes_project 2 11019448 11021367 + Gm37126 antisense antisense MGP_C3HHeJ_T0007191.1 MGP_C3HHeJ_G0005892.1 mouse_genomes_project 2 99964179 99964664 - Gm29235 lincRNA lincRNA MGP_C3HHeJ_T0055996.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465743 94469894 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0055997.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465743 94469925 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0055998.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465743 94496746 - MGP_C3HHeJ_P0055998 Alkbh3 protein_coding protein_coding MGP_C3HHeJ_T0055999.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465822 94466820 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056000.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94465830 94496669 - MGP_C3HHeJ_P0056000 Alkbh3 protein_coding protein_coding MGP_C3HHeJ_T0056001.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94481278 94496370 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056002.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94481347 94490237 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056003.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94481347 94496693 - MGP_C3HHeJ_P0056003 Alkbh3 protein_coding protein_coding MGP_C3HHeJ_T0056004.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94490823 94496693 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056005.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94491293 94496691 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0056006.1 MGP_C3HHeJ_G0025904.1 mouse_genomes_project 2 94493086 94496691 - Alkbh3 protein_coding processed_transcript MGP_C3HHeJ_T0010375.1 MGP_C3HHeJ_G0008508.1 mouse_genomes_project 2 133506804 133506890 + Mir103-2 miRNA miRNA MGP_C3HHeJ_T0017700.1 MGP_C3HHeJ_G0015257.1 mouse_genomes_project 2 176637507 176654677 - Gm14455 processed_transcript processed_transcript MGP_C3HHeJ_T0007114.1 MGP_C3HHeJ_G0005828.1 mouse_genomes_project 2 48475004 48481965 - Gm13480 lincRNA lincRNA MGP_C3HHeJ_T0056661.1 MGP_C3HHeJ_G0026083.1 mouse_genomes_project 2 121885847 121898252 - Pla2g4f protein_coding retained_intron MGP_C3HHeJ_T0056662.1 MGP_C3HHeJ_G0026083.1 mouse_genomes_project 2 121885856 121900057 - MGP_C3HHeJ_P0056662 Pla2g4f protein_coding protein_coding MGP_C3HHeJ_T0010295.1 MGP_C3HHeJ_G0008428.1 mouse_genomes_project 2 22567271 22567397 + Gm22875 miRNA miRNA MGP_C3HHeJ_T0010314.1 MGP_C3HHeJ_G0008447.1 mouse_genomes_project 2 30405496 30405575 + Gm23363 miRNA miRNA MGP_C3HHeJ_T0007072.1 MGP_C3HHeJ_G0005797.1 mouse_genomes_project 2 22768542 22792846 - Gm13387 lincRNA lincRNA MGP_C3HHeJ_T0007073.1 MGP_C3HHeJ_G0005797.1 mouse_genomes_project 2 22788472 22792846 - Gm13387 lincRNA lincRNA MGP_C3HHeJ_T0007074.1 MGP_C3HHeJ_G0005797.1 mouse_genomes_project 2 22791266 22792773 - Gm13387 lincRNA lincRNA MGP_C3HHeJ_T0010351.1 MGP_C3HHeJ_G0008484.1 mouse_genomes_project 2 94726247 94726337 - Mir129-2 miRNA miRNA MGP_C3HHeJ_T0100515.1 MGP_C3HHeJ_G0038709.1 mouse_genomes_project 2 172325473 172325610 + Gm22704 snoRNA snoRNA MGP_C3HHeJ_T0017572.1 MGP_C3HHeJ_G0015196.1 mouse_genomes_project 2 83526649 83550508 - Gm13684 processed_transcript processed_transcript MGP_C3HHeJ_T0055348.1 MGP_C3HHeJ_G0025639.1 mouse_genomes_project 2 84488392 84489879 - MGP_C3HHeJ_P0055348 Gm19426 protein_coding protein_coding MGP_C3HHeJ_T0059530.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 185994826 186071106 - MGP_C3HHeJ_P0059530 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0059531.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 185997950 186032272 - MGP_C3HHeJ_P0059531 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0059532.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 186018450 186071106 - MGP_C3HHeJ_P0059532 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0059533.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 186029421 186071106 - Zbtb46 protein_coding retained_intron MGP_C3HHeJ_T0059534.1 MGP_C3HHeJ_G0026740.1 mouse_genomes_project 2 186032111 186071059 - MGP_C3HHeJ_P0059534 Zbtb46 protein_coding protein_coding MGP_C3HHeJ_T0017612.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115283970 115298406 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017613.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284078 115303602 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017614.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284079 115302894 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017615.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284081 115303415 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017616.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284094 115291039 + A530058N18Rik processed_transcript retained_intron MGP_C3HHeJ_T0017617.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284112 115287881 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017618.1 MGP_C3HHeJ_G0015218.1 mouse_genomes_project 2 115284113 115302762 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0056350.1 MGP_C3HHeJ_G0026007.1 mouse_genomes_project 2 113494868 113638456 + MGP_C3HHeJ_P0056350 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007148.1 MGP_C3HHeJ_G0005857.1 mouse_genomes_project 2 73666552 73667102 + Gm28640 lincRNA lincRNA MGP_C3HHeJ_T0017590.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93481167 93488867 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017591.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93481167 93488867 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017592.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93482559 93488894 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017593.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93482560 93487165 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017594.1 MGP_C3HHeJ_G0015208.1 mouse_genomes_project 2 93485899 93501813 + 4631405J19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0053720.1 MGP_C3HHeJ_G0025331.1 mouse_genomes_project 2 30156885 30173512 + MGP_C3HHeJ_P0053720 Plpp7 protein_coding protein_coding MGP_C3HHeJ_T0053721.1 MGP_C3HHeJ_G0025331.1 mouse_genomes_project 2 30156922 30172818 + MGP_C3HHeJ_P0053721 Plpp7 protein_coding protein_coding MGP_C3HHeJ_T0053722.1 MGP_C3HHeJ_G0025331.1 mouse_genomes_project 2 30157512 30173500 + MGP_C3HHeJ_P0053722 Plpp7 protein_coding protein_coding MGP_C3HHeJ_T0003838.1 MGP_C3HHeJ_G0003431.1 mouse_genomes_project 2 17838406 17858040 - Gm17171 antisense antisense MGP_C3HHeJ_T0001006.1 MGP_C3HHeJ_G0000943.1 mouse_genomes_project 2 10328338 10330939 + TEC TEC MGP_C3HHeJ_T0017654.1 MGP_C3HHeJ_G0015235.1 mouse_genomes_project 2 133517180 133518886 + Gm14233 processed_transcript processed_transcript MGP_C3HHeJ_T0007212.1 MGP_C3HHeJ_G0005910.1 mouse_genomes_project 2 116473891 116476128 + Gm28493 lincRNA lincRNA MGP_C3HHeJ_T0059156.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173712485 174004493 + MGP_C3HHeJ_P0059156 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059157.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173713142 173977632 + MGP_C3HHeJ_P0059157 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059158.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173974021 174168354 + MGP_C3HHeJ_P0059158 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059159.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173974021 174168354 + MGP_C3HHeJ_P0059159 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0059160.1 MGP_C3HHeJ_G0026650.1 mouse_genomes_project 2 173974963 174004493 + MGP_C3HHeJ_P0059160 Tshz2 protein_coding protein_coding MGP_C3HHeJ_T0011401.1 MGP_C3HHeJ_G0009534.1 mouse_genomes_project 2 43630205 43630266 + Gm27676 misc_RNA misc_RNA MGP_C3HHeJ_T0057188.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129825006 129874898 - MGP_C3HHeJ_P0057188 Nphp1 protein_coding protein_coding MGP_C3HHeJ_T0057189.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129825008 129828939 - Nphp1 protein_coding processed_transcript MGP_C3HHeJ_T0057190.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129825010 129874941 - MGP_C3HHeJ_P0057190 Nphp1 protein_coding protein_coding MGP_C3HHeJ_T0057191.1 MGP_C3HHeJ_G0026186.1 mouse_genomes_project 2 129830020 129838328 - Nphp1 protein_coding retained_intron MGP_C3HHeJ_T0013481.1 MGP_C3HHeJ_G0011585.1 mouse_genomes_project 2 80649387 80651393 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054197.1 MGP_C3HHeJ_G0025424.1 mouse_genomes_project 2 35619656 35620640 + MGP_C3HHeJ_P0054197 Olfr368 protein_coding protein_coding MGP_C3HHeJ_T0010286.1 MGP_C3HHeJ_G0008419.1 mouse_genomes_project 2 7720495 7720622 + Mir669i miRNA miRNA MGP_C3HHeJ_T0058187.1 MGP_C3HHeJ_G0026446.1 mouse_genomes_project 2 158322032 158337015 - MGP_C3HHeJ_P0058187 protein_coding protein_coding MGP_C3HHeJ_T0058188.1 MGP_C3HHeJ_G0026446.1 mouse_genomes_project 2 158328311 158336965 - MGP_C3HHeJ_P0058188 protein_coding protein_coding MGP_C3HHeJ_T0058189.1 MGP_C3HHeJ_G0026446.1 mouse_genomes_project 2 158331105 158336965 - protein_coding retained_intron MGP_C3HHeJ_T0053166.1 MGP_C3HHeJ_G0025242.1 mouse_genomes_project 2 24815353 24826514 - MGP_C3HHeJ_P0053166 Tmem8c protein_coding protein_coding MGP_C3HHeJ_T0053167.1 MGP_C3HHeJ_G0025242.1 mouse_genomes_project 2 24815355 24822203 - MGP_C3HHeJ_P0053167 Tmem8c protein_coding protein_coding MGP_C3HHeJ_T0013474.1 MGP_C3HHeJ_G0011578.1 mouse_genomes_project 2 78707593 78707795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001030.1 MGP_C3HHeJ_G0000967.1 mouse_genomes_project 2 31122220 31127422 - TEC TEC MGP_C3HHeJ_T0055477.1 MGP_C3HHeJ_G0025725.1 mouse_genomes_project 2 87133799 87134738 - MGP_C3HHeJ_P0055477 Olfr1110 protein_coding protein_coding MGP_C3HHeJ_T0057224.1 MGP_C3HHeJ_G0026194.1 mouse_genomes_project 2 130812955 130916717 + MGP_C3HHeJ_P0057224 Mertk protein_coding protein_coding MGP_C3HHeJ_T0057225.1 MGP_C3HHeJ_G0026194.1 mouse_genomes_project 2 130886646 130916506 + Mertk protein_coding processed_transcript MGP_C3HHeJ_T0007342.1 MGP_C3HHeJ_G0006016.1 mouse_genomes_project 2 176166821 176167822 - Gm14272 lincRNA lincRNA MGP_C3HHeJ_T0055453.1 MGP_C3HHeJ_G0025703.1 mouse_genomes_project 2 86430553 86431501 - MGP_C3HHeJ_P0055453 Olfr1079 protein_coding protein_coding MGP_C3HHeJ_T0055454.1 MGP_C3HHeJ_G0025703.1 mouse_genomes_project 2 86430553 86435084 - MGP_C3HHeJ_P0055454 Olfr1079 protein_coding protein_coding MGP_C3HHeJ_T0052808.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037207 23043100 + MGP_C3HHeJ_P0052808 Sapcd2 protein_coding protein_coding MGP_C3HHeJ_T0052809.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037216 23041690 + MGP_C3HHeJ_P0052809 Sapcd2 protein_coding protein_coding MGP_C3HHeJ_T0052810.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037220 23041690 + MGP_C3HHeJ_P0052810 Sapcd2 protein_coding protein_coding MGP_C3HHeJ_T0052811.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23037246 23040029 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0052812.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23039907 23041159 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0052813.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23040660 23041664 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0052814.1 MGP_C3HHeJ_G0025176.1 mouse_genomes_project 2 23040846 23041687 + Sapcd2 protein_coding processed_transcript MGP_C3HHeJ_T0058623.1 MGP_C3HHeJ_G0026519.1 mouse_genomes_project 2 163875450 163877679 - MGP_C3HHeJ_P0058623 Gm826 protein_coding protein_coding MGP_C3HHeJ_T0058624.1 MGP_C3HHeJ_G0026519.1 mouse_genomes_project 2 163875801 163898132 - Gm826 protein_coding processed_transcript MGP_C3HHeJ_T0058625.1 MGP_C3HHeJ_G0026519.1 mouse_genomes_project 2 163875918 163891468 - MGP_C3HHeJ_P0058625 Gm826 protein_coding protein_coding MGP_C3HHeJ_T0101880.1 MGP_C3HHeJ_G0039845.1 mouse_genomes_project 2 34810071 34810374 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100429.1 MGP_C3HHeJ_G0038623.1 mouse_genomes_project 2 8238409 8238538 - Gm23877 snoRNA snoRNA MGP_C3HHeJ_T0003849.1 MGP_C3HHeJ_G0003439.1 mouse_genomes_project 2 23397083 23400950 - A230005M16Rik antisense antisense MGP_C3HHeJ_T0003850.1 MGP_C3HHeJ_G0003439.1 mouse_genomes_project 2 23397740 23399499 - A230005M16Rik antisense antisense MGP_C3HHeJ_T0052572.1 MGP_C3HHeJ_G0025132.1 mouse_genomes_project 2 20743710 20809833 + MGP_C3HHeJ_P0052572 4931423N10Rik protein_coding protein_coding MGP_C3HHeJ_T0052573.1 MGP_C3HHeJ_G0025132.1 mouse_genomes_project 2 20743731 20807336 + MGP_C3HHeJ_P0052573 4931423N10Rik protein_coding protein_coding MGP_C3HHeJ_T0057106.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065117 129093570 + Ap4e1 protein_coding retained_intron MGP_C3HHeJ_T0057107.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065121 129069953 + Ap4e1 protein_coding retained_intron MGP_C3HHeJ_T0057108.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065124 129102091 + MGP_C3HHeJ_P0057108 Ap4e1 protein_coding protein_coding MGP_C3HHeJ_T0057109.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065130 129126432 + MGP_C3HHeJ_P0057109 Ap4e1 protein_coding protein_coding MGP_C3HHeJ_T0057110.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065152 129084995 + MGP_C3HHeJ_P0057110 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057111.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065154 129119058 + MGP_C3HHeJ_P0057111 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057112.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129065154 129104448 + MGP_C3HHeJ_P0057112 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057113.1 MGP_C3HHeJ_G0026166.1 mouse_genomes_project 2 129106612 129118887 + MGP_C3HHeJ_P0057113 Ap4e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098284.1 MGP_C3HHeJ_G0036496.1 mouse_genomes_project 2 160335882 160336018 - Gm27653 scaRNA scaRNA MGP_C3HHeJ_T0055401.1 MGP_C3HHeJ_G0025653.1 mouse_genomes_project 2 84904773 84942633 - MGP_C3HHeJ_P0055401 Lrrc55 protein_coding protein_coding MGP_C3HHeJ_T0055402.1 MGP_C3HHeJ_G0025653.1 mouse_genomes_project 2 84934004 84942633 - MGP_C3HHeJ_P0055402 Lrrc55 protein_coding protein_coding MGP_C3HHeJ_T0057722.1 MGP_C3HHeJ_G0026309.1 mouse_genomes_project 2 147321928 147323241 + MGP_C3HHeJ_P0057722 Gm561 protein_coding protein_coding MGP_C3HHeJ_T0055600.1 MGP_C3HHeJ_G0025827.1 mouse_genomes_project 2 89735951 89736875 - MGP_C3HHeJ_P0055600 Olfr1245 protein_coding protein_coding MGP_C3HHeJ_T0099232.1 MGP_C3HHeJ_G0037426.1 mouse_genomes_project 2 185784407 185784511 + Gm24892 snRNA snRNA MGP_C3HHeJ_T0010319.1 MGP_C3HHeJ_G0008452.1 mouse_genomes_project 2 30820776 30820858 - Mir2861 miRNA miRNA MGP_C3HHeJ_T0003999.1 MGP_C3HHeJ_G0003544.1 mouse_genomes_project 2 123561214 123562152 - Gm14019 antisense antisense MGP_C3HHeJ_T0055062.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74048205 74107177 - MGP_C3HHeJ_P0055062 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055063.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74048248 74107177 - MGP_C3HHeJ_P0055063 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055064.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74048255 74061014 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055065.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74049247 74107160 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055066.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74049955 74106452 - MGP_C3HHeJ_P0055066 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055067.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74059816 74107608 - MGP_C3HHeJ_P0055067 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055068.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74065285 74106746 - MGP_C3HHeJ_P0055068 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0055069.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74075269 74082887 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055070.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74075895 74107664 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055071.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74078945 74079785 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055072.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74079238 74107145 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055073.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74097032 74107109 - Lnpk1 protein_coding processed_transcript MGP_C3HHeJ_T0055074.1 MGP_C3HHeJ_G0025575.1 mouse_genomes_project 2 74097297 74107123 - MGP_C3HHeJ_P0055074 Lnpk1 protein_coding protein_coding MGP_C3HHeJ_T0057312.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132469418 132543949 + MGP_C3HHeJ_P0057312 Ebf4 protein_coding protein_coding MGP_C3HHeJ_T0057313.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + Ebf4 protein_coding retained_intron MGP_C3HHeJ_T0057314.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057314 Ebf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057315.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057315 Ebf4 protein_coding protein_coding MGP_C3HHeJ_T0057316.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057316 Ebf4 protein_coding protein_coding MGP_C3HHeJ_T0057317.1 MGP_C3HHeJ_G0026218.1 mouse_genomes_project 2 132470188 132543949 + MGP_C3HHeJ_P0057317 Ebf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099177.1 MGP_C3HHeJ_G0037371.1 mouse_genomes_project 2 17811201 17811308 + Gm23970 snRNA snRNA MGP_C3HHeJ_T0057941.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355626 155375967 + MGP_C3HHeJ_P0057941 Tbc1d20 protein_coding protein_coding MGP_C3HHeJ_T0057942.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355649 155369810 + MGP_C3HHeJ_P0057942 Tbc1d20 protein_coding protein_coding MGP_C3HHeJ_T0057943.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355670 155375967 + Tbc1d20 protein_coding retained_intron MGP_C3HHeJ_T0057944.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155355978 155370156 + MGP_C3HHeJ_P0057944 Tbc1d20 protein_coding protein_coding MGP_C3HHeJ_T0057945.1 MGP_C3HHeJ_G0026372.1 mouse_genomes_project 2 155369926 155372789 + Tbc1d20 protein_coding retained_intron MGP_C3HHeJ_T0011391.1 MGP_C3HHeJ_G0009524.1 mouse_genomes_project 2 5576861 5577152 - Gm24534 misc_RNA misc_RNA MGP_C3HHeJ_T0013542.1 MGP_C3HHeJ_G0011646.1 mouse_genomes_project 2 102865248 102865687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054695.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63051982 63180767 - MGP_C3HHeJ_P0054695 Fign protein_coding protein_coding MGP_C3HHeJ_T0054696.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63057794 63180793 - MGP_C3HHeJ_P0054696 Fign protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054697.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63060901 63180743 - Fign protein_coding processed_transcript MGP_C3HHeJ_T0054698.1 MGP_C3HHeJ_G0025507.1 mouse_genomes_project 2 63061070 63180765 - Fign protein_coding processed_transcript MGP_C3HHeJ_T0004082.1 MGP_C3HHeJ_G0003607.1 mouse_genomes_project 2 167337205 167338157 + 0610039K10Rik antisense antisense MGP_C3HHeJ_T0004083.1 MGP_C3HHeJ_G0003607.1 mouse_genomes_project 2 167337205 167338156 + 0610039K10Rik antisense antisense MGP_C3HHeJ_T0059588.1 MGP_C3HHeJ_G0026748.1 mouse_genomes_project 2 186286227 186288032 - MGP_C3HHeJ_P0059588 Sox18 protein_coding protein_coding MGP_C3HHeJ_T0057018.1 MGP_C3HHeJ_G0026144.1 mouse_genomes_project 2 127088071 127106303 + MGP_C3HHeJ_P0057018 Ctxn2 protein_coding protein_coding MGP_C3HHeJ_T0011413.1 MGP_C3HHeJ_G0009546.1 mouse_genomes_project 2 105915153 105915388 - Gm27308 misc_RNA misc_RNA MGP_C3HHeJ_T0057458.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737444 133766999 + MGP_C3HHeJ_P0057458 Smox protein_coding protein_coding MGP_C3HHeJ_T0057459.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737712 133771969 + MGP_C3HHeJ_P0057459 Smox protein_coding protein_coding MGP_C3HHeJ_T0057460.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737871 133767038 + MGP_C3HHeJ_P0057460 Smox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057461.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + Smox protein_coding retained_intron MGP_C3HHeJ_T0057462.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057462 Smox protein_coding protein_coding MGP_C3HHeJ_T0057463.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057463 Smox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057464.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057464 Smox protein_coding protein_coding MGP_C3HHeJ_T0057465.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057465 Smox protein_coding protein_coding MGP_C3HHeJ_T0057466.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057466 Smox protein_coding protein_coding MGP_C3HHeJ_T0057467.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057467 Smox protein_coding protein_coding MGP_C3HHeJ_T0057468.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737891 133771958 + MGP_C3HHeJ_P0057468 Smox protein_coding protein_coding MGP_C3HHeJ_T0057469.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737912 133772708 + MGP_C3HHeJ_P0057469 Smox protein_coding protein_coding MGP_C3HHeJ_T0057470.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133737941 133771953 + MGP_C3HHeJ_P0057470 Smox protein_coding protein_coding MGP_C3HHeJ_T0057471.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133738212 133758866 + MGP_C3HHeJ_P0057471 Smox protein_coding protein_coding MGP_C3HHeJ_T0057472.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133755640 133758903 + Smox protein_coding processed_transcript MGP_C3HHeJ_T0057473.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133766941 133771665 + MGP_C3HHeJ_P0057473 Smox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057474.1 MGP_C3HHeJ_G0026250.1 mouse_genomes_project 2 133768680 133771927 + Smox protein_coding retained_intron MGP_C3HHeJ_T0010345.1 MGP_C3HHeJ_G0008478.1 mouse_genomes_project 2 92616578 92616676 + Mir1955 miRNA miRNA MGP_C3HHeJ_T0057930.1 MGP_C3HHeJ_G0026367.1 mouse_genomes_project 2 155054735 155058773 + MGP_C3HHeJ_P0057930 Slc52a3 protein_coding protein_coding MGP_C3HHeJ_T0055352.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84548098 84561909 + MGP_C3HHeJ_P0055352 Ube2l6 protein_coding protein_coding MGP_C3HHeJ_T0055353.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84548104 84555604 + MGP_C3HHeJ_P0055353 Ube2l6 protein_coding protein_coding MGP_C3HHeJ_T0055354.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84551912 84562066 + Ube2l6 protein_coding processed_transcript MGP_C3HHeJ_T0055355.1 MGP_C3HHeJ_G0025641.1 mouse_genomes_project 2 84555441 84560043 + Ube2l6 protein_coding retained_intron MGP_C3HHeJ_T0010329.1 MGP_C3HHeJ_G0008462.1 mouse_genomes_project 2 51042235 51042385 + Gm22095 miRNA miRNA MGP_C3HHeJ_T0007101.1 MGP_C3HHeJ_G0005818.1 mouse_genomes_project 2 34496281 34497007 + Gm13431 lincRNA lincRNA MGP_C3HHeJ_T0007102.1 MGP_C3HHeJ_G0005818.1 mouse_genomes_project 2 34496329 34502449 + Gm13431 lincRNA lincRNA MGP_C3HHeJ_T0007103.1 MGP_C3HHeJ_G0005818.1 mouse_genomes_project 2 34499996 34502381 + Gm13431 lincRNA lincRNA MGP_C3HHeJ_T0058343.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390669 159434159 - MGP_C3HHeJ_P0058343 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058344.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390672 159434112 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058345.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390672 159434163 - MGP_C3HHeJ_P0058345 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058348.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159390674 159434167 - MGP_C3HHeJ_P0058348 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058349.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392165 159393128 - Cpne1 protein_coding processed_transcript MGP_C3HHeJ_T0058350.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392187 159434125 - MGP_C3HHeJ_P0058350 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058351.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392221 159395085 - MGP_C3HHeJ_P0058351 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058352.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392226 159395110 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058353.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392340 159434128 - MGP_C3HHeJ_P0058353 Cpne1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058354.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392345 159396993 - MGP_C3HHeJ_P0058354 Cpne1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058355.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159392930 159395385 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058356.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159393033 159434189 - MGP_C3HHeJ_P0058356 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058357.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159396231 159434133 - MGP_C3HHeJ_P0058357 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058358.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159396252 159397424 - Cpne1 protein_coding retained_intron MGP_C3HHeJ_T0058359.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159396999 159434183 - MGP_C3HHeJ_P0058359 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058360.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159397406 159434133 - MGP_C3HHeJ_P0058360 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058361.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159397732 159434087 - MGP_C3HHeJ_P0058361 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0058362.1 MGP_C3HHeJ_G0026473.1 mouse_genomes_project 2 159397743 159423321 - MGP_C3HHeJ_P0058362 Cpne1 protein_coding protein_coding MGP_C3HHeJ_T0053585.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28799415 28804573 - Asb6 protein_coding retained_intron MGP_C3HHeJ_T0053586.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28799415 28806652 - MGP_C3HHeJ_P0053586 Asb6 protein_coding protein_coding MGP_C3HHeJ_T0053587.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28800788 28804584 - MGP_C3HHeJ_P0053587 Asb6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053588.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28801474 28804610 - Asb6 protein_coding retained_intron MGP_C3HHeJ_T0053589.1 MGP_C3HHeJ_G0025309.1 mouse_genomes_project 2 28801778 28803813 - Asb6 protein_coding retained_intron MGP_C3HHeJ_T0098394.1 MGP_C3HHeJ_G0036600.1 mouse_genomes_project 2 3998583 4001124 - Gm10855 sense_intronic sense_intronic MGP_C3HHeJ_T0007339.1 MGP_C3HHeJ_G0006014.1 mouse_genomes_project 2 175374287 175376735 + Gm14640 lincRNA lincRNA MGP_C3HHeJ_T0053733.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315521 30335119 + MGP_C3HHeJ_P0053733 Pomt1 protein_coding protein_coding MGP_C3HHeJ_T0053734.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315574 30316632 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053735.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315603 30322947 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053736.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315616 30335115 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053737.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30315968 30322572 + MGP_C3HHeJ_P0053737 Pomt1 protein_coding protein_coding MGP_C3HHeJ_T0053738.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30316270 30322662 + MGP_C3HHeJ_P0053738 Pomt1 protein_coding protein_coding MGP_C3HHeJ_T0053739.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30323308 30329859 + MGP_C3HHeJ_P0053739 Pomt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053740.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30324239 30327641 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053741.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30326522 30330721 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0053742.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30327612 30332735 + MGP_C3HHeJ_P0053742 Pomt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053743.1 MGP_C3HHeJ_G0025333.1 mouse_genomes_project 2 30330222 30331642 + Pomt1 protein_coding retained_intron MGP_C3HHeJ_T0052584.1 MGP_C3HHeJ_G0025136.1 mouse_genomes_project 2 21654464 21681578 - MGP_C3HHeJ_P0052584 Tbpl2 protein_coding protein_coding MGP_C3HHeJ_T0052585.1 MGP_C3HHeJ_G0025136.1 mouse_genomes_project 2 21654658 21681515 - MGP_C3HHeJ_P0052585 Tbpl2 protein_coding protein_coding MGP_C3HHeJ_T0054194.1 MGP_C3HHeJ_G0025421.1 mouse_genomes_project 2 35401210 35402164 - MGP_C3HHeJ_P0054194 Olfr362 protein_coding protein_coding MGP_C3HHeJ_T0010273.1 MGP_C3HHeJ_G0008406.1 mouse_genomes_project 2 7713321 7713430 + Mir297b miRNA miRNA MGP_C3HHeJ_T0056288.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110992920 111016304 + MGP_C3HHeJ_P0056288 Ccdc34 protein_coding protein_coding MGP_C3HHeJ_T0056289.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110993065 111130111 + MGP_C3HHeJ_P0056289 Ccdc34 protein_coding protein_coding MGP_C3HHeJ_T0056290.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110993083 111016310 + MGP_C3HHeJ_P0056290 Ccdc34 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056291.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 110997125 111012283 + Ccdc34 protein_coding retained_intron MGP_C3HHeJ_T0056292.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 111009043 111015875 + Ccdc34 protein_coding retained_intron MGP_C3HHeJ_T0056293.1 MGP_C3HHeJ_G0025963.1 mouse_genomes_project 2 111011911 111015690 + Ccdc34 protein_coding retained_intron MGP_C3HHeJ_T0013480.1 MGP_C3HHeJ_G0011584.1 mouse_genomes_project 2 80614067 80615195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055177.1 MGP_C3HHeJ_G0025604.1 mouse_genomes_project 2 76803856 76862526 - MGP_C3HHeJ_P0055177 Sestd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055178.1 MGP_C3HHeJ_G0025604.1 mouse_genomes_project 2 76814494 76817037 - Sestd1 protein_coding processed_transcript MGP_C3HHeJ_T0055179.1 MGP_C3HHeJ_G0025604.1 mouse_genomes_project 2 76814496 76897609 - Sestd1 protein_coding processed_transcript MGP_C3HHeJ_T0058108.1 MGP_C3HHeJ_G0026424.1 mouse_genomes_project 2 157320001 157328040 + MGP_C3HHeJ_P0058108 Bpifa3 protein_coding protein_coding MGP_C3HHeJ_T0058109.1 MGP_C3HHeJ_G0026424.1 mouse_genomes_project 2 157320001 157328040 + MGP_C3HHeJ_P0058109 Bpifa3 protein_coding protein_coding MGP_C3HHeJ_T0058110.1 MGP_C3HHeJ_G0026424.1 mouse_genomes_project 2 157325231 157327303 + MGP_C3HHeJ_P0058110 Bpifa3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055104.1 MGP_C3HHeJ_G0025589.1 mouse_genomes_project 2 75239337 75269090 - MGP_C3HHeJ_P0055104 Nfe2l2 protein_coding protein_coding MGP_C3HHeJ_T0055105.1 MGP_C3HHeJ_G0025589.1 mouse_genomes_project 2 75255508 75268938 - Nfe2l2 protein_coding processed_transcript MGP_C3HHeJ_T0052946.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552068 23605364 + MGP_C3HHeJ_P0052946 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052947.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552129 23577261 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052948.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552188 23604436 + MGP_C3HHeJ_P0052948 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052949.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23552302 23604436 + MGP_C3HHeJ_P0052949 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052950.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566102 23605882 + MGP_C3HHeJ_P0052950 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052951.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566176 23583494 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052952.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566182 23604930 + MGP_C3HHeJ_P0052952 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052953.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566189 23605399 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052954.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566192 23606592 + MGP_C3HHeJ_P0052954 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052955.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23566200 23604436 + MGP_C3HHeJ_P0052955 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052956.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23582661 23604911 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052957.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23589209 23591714 + MGP_C3HHeJ_P0052957 Kcnt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052958.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23591820 23598228 + MGP_C3HHeJ_P0052958 Kcnt1 protein_coding protein_coding MGP_C3HHeJ_T0052959.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23596381 23605242 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0052960.1 MGP_C3HHeJ_G0025208.1 mouse_genomes_project 2 23599212 23604559 + Kcnt1 protein_coding retained_intron MGP_C3HHeJ_T0057077.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128651046 128701427 - MGP_C3HHeJ_P0057077 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057078.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128652517 128701361 - MGP_C3HHeJ_P0057078 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057079.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128652519 128701403 - MGP_C3HHeJ_P0057079 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057080.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128662270 128702194 - MGP_C3HHeJ_P0057080 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057081.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128662655 128701345 - MGP_C3HHeJ_P0057081 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057082.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128671406 128701451 - MGP_C3HHeJ_P0057082 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057083.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128675999 128701198 - Gabpb1 protein_coding processed_transcript MGP_C3HHeJ_T0057084.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128677290 128701211 - MGP_C3HHeJ_P0057084 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0057085.1 MGP_C3HHeJ_G0026161.1 mouse_genomes_project 2 128677367 128687700 - MGP_C3HHeJ_P0057085 Gabpb1 protein_coding protein_coding MGP_C3HHeJ_T0013528.1 MGP_C3HHeJ_G0011632.1 mouse_genomes_project 2 96638257 96638417 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010373.1 MGP_C3HHeJ_G0008506.1 mouse_genomes_project 2 132710470 132710533 - Gm23876 miRNA miRNA MGP_C3HHeJ_T0007079.1 MGP_C3HHeJ_G0005801.1 mouse_genomes_project 2 23870065 23871063 + 1810012K08Rik lincRNA lincRNA MGP_C3HHeJ_T0013471.1 MGP_C3HHeJ_G0011575.1 mouse_genomes_project 2 78314542 78315040 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013309.1 MGP_C3HHeJ_G0011413.1 mouse_genomes_project 2 17200765 17202118 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057103.1 MGP_C3HHeJ_G0026165.1 mouse_genomes_project 2 128938066 128983174 - MGP_C3HHeJ_P0057103 Sppl2a protein_coding protein_coding MGP_C3HHeJ_T0057104.1 MGP_C3HHeJ_G0026165.1 mouse_genomes_project 2 128941922 128967961 - MGP_C3HHeJ_P0057104 Sppl2a protein_coding protein_coding MGP_C3HHeJ_T0057105.1 MGP_C3HHeJ_G0026165.1 mouse_genomes_project 2 128962480 128971982 - Sppl2a protein_coding retained_intron MGP_C3HHeJ_T0053235.1 MGP_C3HHeJ_G0025257.1 mouse_genomes_project 2 26319298 26325670 + Gbgt1 protein_coding processed_transcript MGP_C3HHeJ_T0053236.1 MGP_C3HHeJ_G0025257.1 mouse_genomes_project 2 26319298 26327823 + MGP_C3HHeJ_P0053236 Gbgt1 protein_coding protein_coding MGP_C3HHeJ_T0053237.1 MGP_C3HHeJ_G0025257.1 mouse_genomes_project 2 26320153 26327823 + MGP_C3HHeJ_P0053237 Gbgt1 protein_coding protein_coding MGP_C3HHeJ_T0054559.1 MGP_C3HHeJ_G0025487.1 mouse_genomes_project 2 58411188 58431966 + MGP_C3HHeJ_P0054559 Dapl1 protein_coding protein_coding MGP_C3HHeJ_T0054560.1 MGP_C3HHeJ_G0025487.1 mouse_genomes_project 2 58411204 58431966 + Dapl1 protein_coding processed_transcript MGP_C3HHeJ_T0053847.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30701826 30722424 + MGP_C3HHeJ_P0053847 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053848.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30701843 30721477 + MGP_C3HHeJ_P0053848 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053849.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30709087 30723701 + MGP_C3HHeJ_P0053849 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053850.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30709101 30723701 + MGP_C3HHeJ_P0053850 St6galnac6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053851.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710132 30723699 + MGP_C3HHeJ_P0053851 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053852.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710146 30719725 + St6galnac6 protein_coding retained_intron MGP_C3HHeJ_T0053853.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710525 30723699 + MGP_C3HHeJ_P0053853 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053854.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30710778 30714389 + MGP_C3HHeJ_P0053854 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053855.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30711074 30717878 + MGP_C3HHeJ_P0053855 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053856.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30711104 30717898 + MGP_C3HHeJ_P0053856 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0053857.1 MGP_C3HHeJ_G0025348.1 mouse_genomes_project 2 30711363 30723708 + MGP_C3HHeJ_P0053857 St6galnac6 protein_coding protein_coding MGP_C3HHeJ_T0013675.1 MGP_C3HHeJ_G0011779.1 mouse_genomes_project 2 155827934 155828535 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013347.1 MGP_C3HHeJ_G0011451.1 mouse_genomes_project 2 33725707 33726229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010291.1 MGP_C3HHeJ_G0008424.1 mouse_genomes_project 2 15507435 15507493 + Mir7655 miRNA miRNA MGP_C3HHeJ_T0010316.1 MGP_C3HHeJ_G0008449.1 mouse_genomes_project 2 30755162 30755248 + Mir1954 miRNA miRNA MGP_C3HHeJ_T0056161.1 MGP_C3HHeJ_G0025936.1 mouse_genomes_project 2 104862333 104864317 + MGP_C3HHeJ_P0056161 A930018P22Rik protein_coding protein_coding MGP_C3HHeJ_T0058500.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160522304 160588264 - MGP_C3HHeJ_P0058500 Rbl1 protein_coding protein_coding MGP_C3HHeJ_T0058501.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160549018 160588286 - Rbl1 protein_coding retained_intron MGP_C3HHeJ_T0058502.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160557528 160588278 - Rbl1 protein_coding retained_intron MGP_C3HHeJ_T0058503.1 MGP_C3HHeJ_G0026494.1 mouse_genomes_project 2 160570596 160574715 - Rbl1 protein_coding retained_intron MGP_C3HHeJ_T0010275.1 MGP_C3HHeJ_G0008408.1 mouse_genomes_project 2 7713857 7713954 + Gm26092 miRNA miRNA MGP_C3HHeJ_T0058998.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907203 169998608 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0058999.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907723 169909073 - Sulf2 protein_coding retained_intron MGP_C3HHeJ_T0059000.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907841 169997839 - MGP_C3HHeJ_P0059000 Sulf2 protein_coding protein_coding MGP_C3HHeJ_T0059001.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169907868 169911169 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0059002.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169926402 169997809 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0059003.1 MGP_C3HHeJ_G0026619.1 mouse_genomes_project 2 169973674 169997426 - Sulf2 protein_coding processed_transcript MGP_C3HHeJ_T0007190.1 MGP_C3HHeJ_G0005891.1 mouse_genomes_project 2 97532504 97632300 - 4930445B16Rik lincRNA lincRNA MGP_C3HHeJ_T0053111.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24656681 24660165 + MGP_C3HHeJ_P0053111 Rpl7a protein_coding protein_coding MGP_C3HHeJ_T0053112.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24657663 24659904 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053113.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24657667 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053114.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24657852 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053115.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24659038 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053116.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24659465 24660165 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0053117.1 MGP_C3HHeJ_G0025233.1 mouse_genomes_project 2 24659517 24660059 + Rpl7a protein_coding processed_transcript MGP_C3HHeJ_T0013385.1 MGP_C3HHeJ_G0011489.1 mouse_genomes_project 2 47976569 47977344 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054288.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370132 37421701 - MGP_C3HHeJ_P0054288 Golga1 protein_coding protein_coding MGP_C3HHeJ_T0054289.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370368 37421728 - MGP_C3HHeJ_P0054289 Golga1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054290.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370374 37409224 - MGP_C3HHeJ_P0054290 Golga1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054291.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37370650 37372278 - Golga1 protein_coding processed_transcript MGP_C3HHeJ_T0054292.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37371524 37372438 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0054293.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37371684 37373433 - MGP_C3HHeJ_P0054293 Golga1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054294.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37372025 37373113 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0054295.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37377338 37421701 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0054296.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37397601 37412332 - MGP_C3HHeJ_P0054296 Golga1 protein_coding protein_coding MGP_C3HHeJ_T0054297.1 MGP_C3HHeJ_G0025443.1 mouse_genomes_project 2 37403306 37421698 - Golga1 protein_coding retained_intron MGP_C3HHeJ_T0001036.1 MGP_C3HHeJ_G0000973.1 mouse_genomes_project 2 34335016 34338188 - TEC TEC MGP_C3HHeJ_T0052990.1 MGP_C3HHeJ_G0025214.1 mouse_genomes_project 2 23983046 24035267 - MGP_C3HHeJ_P0052990 Ccdc187 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052992.1 MGP_C3HHeJ_G0025214.1 mouse_genomes_project 2 24011441 24035441 - MGP_C3HHeJ_P0052992 Ccdc187 protein_coding protein_coding MGP_C3HHeJ_T0052993.1 MGP_C3HHeJ_G0025214.1 mouse_genomes_project 2 24020867 24028943 - MGP_C3HHeJ_P0052993 Ccdc187 protein_coding protein_coding MGP_C3HHeJ_T0010293.1 MGP_C3HHeJ_G0008426.1 mouse_genomes_project 2 20152316 20152384 + Mir3967 miRNA miRNA MGP_C3HHeJ_T0098398.1 MGP_C3HHeJ_G0036604.1 mouse_genomes_project 2 116237294 116238312 + Gm28492 sense_intronic sense_intronic MGP_C3HHeJ_T0056162.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104887465 105166587 - MGP_C3HHeJ_P0056162 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0056163.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104891438 104975271 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056164.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104893171 105007211 - MGP_C3HHeJ_P0056164 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0056165.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104896568 104902842 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056166.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104928539 104985812 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056167.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 104952437 105005562 - D430041D05Rik protein_coding retained_intron MGP_C3HHeJ_T0056168.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 105002707 105166245 - MGP_C3HHeJ_P0056168 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0056169.1 MGP_C3HHeJ_G0025937.1 mouse_genomes_project 2 105003000 105166246 - MGP_C3HHeJ_P0056169 D430041D05Rik protein_coding protein_coding MGP_C3HHeJ_T0058839.1 MGP_C3HHeJ_G0026589.1 mouse_genomes_project 2 168526262 168529272 + MGP_C3HHeJ_P0058839 Ube2c protein_coding protein_coding MGP_C3HHeJ_T0058840.1 MGP_C3HHeJ_G0026589.1 mouse_genomes_project 2 168526267 168535187 + MGP_C3HHeJ_P0058840 Ube2c protein_coding protein_coding MGP_C3HHeJ_T0004114.1 MGP_C3HHeJ_G0003630.1 mouse_genomes_project 2 178608958 178623697 - Nespas antisense antisense MGP_C3HHeJ_T0004115.1 MGP_C3HHeJ_G0003630.1 mouse_genomes_project 2 178609915 178623650 - Nespas antisense antisense MGP_C3HHeJ_T0004116.1 MGP_C3HHeJ_G0003630.1 mouse_genomes_project 2 178612074 178613157 - Nespas antisense antisense MGP_C3HHeJ_T0052727.1 MGP_C3HHeJ_G0025160.1 mouse_genomes_project 2 22870728 22873244 - MGP_C3HHeJ_P0052727 Tubb4b protein_coding protein_coding MGP_C3HHeJ_T0052728.1 MGP_C3HHeJ_G0025160.1 mouse_genomes_project 2 22872064 22873196 - Tubb4b protein_coding processed_transcript MGP_C3HHeJ_T0003851.1 MGP_C3HHeJ_G0003440.1 mouse_genomes_project 2 23472281 23475352 + antisense antisense MGP_C3HHeJ_T0003810.1 MGP_C3HHeJ_G0003409.1 mouse_genomes_project 2 442587 448521 + Gm13184 antisense antisense MGP_C3HHeJ_T0052135.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3126058 3159759 - MGP_C3HHeJ_P0052135 Proser2 protein_coding protein_coding MGP_C3HHeJ_T0052136.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3128477 3159694 - MGP_C3HHeJ_P0052136 Proser2 protein_coding protein_coding MGP_C3HHeJ_T0052137.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3129652 3159687 - MGP_C3HHeJ_P0052137 Proser2 protein_coding protein_coding MGP_C3HHeJ_T0052138.1 MGP_C3HHeJ_G0025062.1 mouse_genomes_project 2 3154354 3159729 - Proser2 protein_coding processed_transcript MGP_C3HHeJ_T0017639.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130298943 130535463 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017640.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130405231 130535644 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017641.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130424806 130535670 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017642.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130424982 130535493 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017643.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130452287 130535563 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017644.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130475851 130535509 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0017645.1 MGP_C3HHeJ_G0015228.1 mouse_genomes_project 2 130475852 130535214 - Gm14005 processed_transcript processed_transcript MGP_C3HHeJ_T0059399.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185302501 185322936 + MGP_C3HHeJ_P0059399 Slc17a9 protein_coding protein_coding MGP_C3HHeJ_T0059400.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185302617 185312038 + Slc17a9 protein_coding retained_intron MGP_C3HHeJ_T0059401.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185302638 185316845 + Slc17a9 protein_coding processed_transcript MGP_C3HHeJ_T0059402.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185316150 185321994 + Slc17a9 protein_coding processed_transcript MGP_C3HHeJ_T0059403.1 MGP_C3HHeJ_G0026718.1 mouse_genomes_project 2 185318006 185322072 + Slc17a9 protein_coding retained_intron MGP_C3HHeJ_T0055445.1 MGP_C3HHeJ_G0025695.1 mouse_genomes_project 2 86212414 86213353 - MGP_C3HHeJ_P0055445 Olfr1054 protein_coding protein_coding MGP_C3HHeJ_T0057178.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129675192 129694862 + MGP_C3HHeJ_P0057178 Mrps5 protein_coding protein_coding MGP_C3HHeJ_T0057179.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129675389 129692550 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057180.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129675389 129684072 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057181.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129678395 129683694 + MGP_C3HHeJ_P0057181 Mrps5 protein_coding protein_coding MGP_C3HHeJ_T0057182.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129683671 129686388 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057183.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129687839 129691880 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0057184.1 MGP_C3HHeJ_G0026183.1 mouse_genomes_project 2 129688044 129689257 + Mrps5 protein_coding retained_intron MGP_C3HHeJ_T0007174.1 MGP_C3HHeJ_G0005879.1 mouse_genomes_project 2 91597583 91602836 - Gm17281 lincRNA lincRNA MGP_C3HHeJ_T0004019.1 MGP_C3HHeJ_G0003559.1 mouse_genomes_project 2 134390820 134468046 + Gm14051 antisense antisense MGP_C3HHeJ_T0004045.1 MGP_C3HHeJ_G0003575.1 mouse_genomes_project 2 148295854 148300185 - Gm14092 antisense antisense MGP_C3HHeJ_T0004017.1 MGP_C3HHeJ_G0003557.1 mouse_genomes_project 2 133808439 133810005 + Gm14285 antisense antisense MGP_C3HHeJ_T0057811.1 MGP_C3HHeJ_G0026332.1 mouse_genomes_project 2 151624979 151627991 - MGP_C3HHeJ_P0057811 Cst11 protein_coding protein_coding MGP_C3HHeJ_T0101910.1 MGP_C3HHeJ_G0039875.1 mouse_genomes_project 2 87947916 87948969 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057156.1 MGP_C3HHeJ_G0026177.1 mouse_genomes_project 2 129443486 129447535 + MGP_C3HHeJ_P0057156 Adra2b protein_coding protein_coding MGP_C3HHeJ_T0057157.1 MGP_C3HHeJ_G0026177.1 mouse_genomes_project 2 129443564 129447535 + MGP_C3HHeJ_P0057157 Adra2b protein_coding protein_coding MGP_C3HHeJ_T0056188.1 MGP_C3HHeJ_G0025941.1 mouse_genomes_project 2 105489264 105491696 - MGP_C3HHeJ_P0056188 Pin1rt1 protein_coding protein_coding MGP_C3HHeJ_T0057017.1 MGP_C3HHeJ_G0026143.1 mouse_genomes_project 2 127049081 127073257 - MGP_C3HHeJ_P0057017 Gm9833 protein_coding protein_coding MGP_C3HHeJ_T0055500.1 MGP_C3HHeJ_G0025740.1 mouse_genomes_project 2 87651379 87655244 + MGP_C3HHeJ_P0055500 Olfr1129 protein_coding protein_coding MGP_C3HHeJ_T0055512.1 MGP_C3HHeJ_G0025751.1 mouse_genomes_project 2 87815356 87816292 - MGP_C3HHeJ_P0055512 Olfr1138 protein_coding protein_coding MGP_C3HHeJ_T0007086.1 MGP_C3HHeJ_G0005806.1 mouse_genomes_project 2 28494011 28498311 + Gm14487 lincRNA lincRNA MGP_C3HHeJ_T0058772.1 MGP_C3HHeJ_G0026561.1 mouse_genomes_project 2 167954677 167961102 - MGP_C3HHeJ_P0058772 Svs3a protein_coding protein_coding MGP_C3HHeJ_T0058569.1 MGP_C3HHeJ_G0026507.1 mouse_genomes_project 2 161636683 161684912 - MGP_C3HHeJ_P0058569 D630003M21Rik protein_coding protein_coding MGP_C3HHeJ_T0058570.1 MGP_C3HHeJ_G0026507.1 mouse_genomes_project 2 161641893 161684912 - MGP_C3HHeJ_P0058570 D630003M21Rik protein_coding protein_coding MGP_C3HHeJ_T0058571.1 MGP_C3HHeJ_G0026507.1 mouse_genomes_project 2 161651480 161684912 - MGP_C3HHeJ_P0058571 D630003M21Rik protein_coding protein_coding MGP_C3HHeJ_T0053954.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31109876 31218174 - MGP_C3HHeJ_P0053954 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053955.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31110026 31265505 - MGP_C3HHeJ_P0053955 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053956.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31110026 31216141 - MGP_C3HHeJ_P0053956 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053957.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31129734 31133431 - Garnl3 protein_coding retained_intron MGP_C3HHeJ_T0053958.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31134030 31237593 - Garnl3 protein_coding processed_transcript MGP_C3HHeJ_T0053959.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31141088 31161544 - MGP_C3HHeJ_P0053959 Garnl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053960.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31145185 31153954 - Garnl3 protein_coding retained_intron MGP_C3HHeJ_T0053961.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31174201 31217721 - Garnl3 protein_coding processed_transcript MGP_C3HHeJ_T0053962.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181766 31216330 - Garnl3 protein_coding processed_transcript MGP_C3HHeJ_T0053963.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181771 31265719 - MGP_C3HHeJ_P0053963 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0053964.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181773 31265723 - MGP_C3HHeJ_P0053964 Garnl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053965.1 MGP_C3HHeJ_G0025364.1 mouse_genomes_project 2 31181818 31264677 - MGP_C3HHeJ_P0053965 Garnl3 protein_coding protein_coding MGP_C3HHeJ_T0007062.1 MGP_C3HHeJ_G0005790.1 mouse_genomes_project 2 16304007 16306581 - Carlr lincRNA lincRNA MGP_C3HHeJ_T0003894.1 MGP_C3HHeJ_G0003474.1 mouse_genomes_project 2 37036129 37044861 + Nr5a1os antisense antisense MGP_C3HHeJ_T0055871.1 MGP_C3HHeJ_G0025882.1 mouse_genomes_project 2 92344587 92346540 + MGP_C3HHeJ_P0055871 Gm9821 protein_coding protein_coding MGP_C3HHeJ_T0052092.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2035468 2052945 - Optn protein_coding processed_transcript MGP_C3HHeJ_T0052093.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2035468 2086507 - MGP_C3HHeJ_P0052093 Optn protein_coding protein_coding MGP_C3HHeJ_T0052094.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2035470 2086400 - MGP_C3HHeJ_P0052094 Optn protein_coding protein_coding MGP_C3HHeJ_T0052095.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2036127 2054239 - Optn protein_coding processed_transcript MGP_C3HHeJ_T0052096.1 MGP_C3HHeJ_G0025053.1 mouse_genomes_project 2 2068201 2086513 - Optn protein_coding processed_transcript MGP_C3HHeJ_T0054740.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021400 65219379 + MGP_C3HHeJ_P0054740 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054741.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021475 65213439 + MGP_C3HHeJ_P0054741 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054742.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021478 65058551 + Csrnp3 protein_coding retained_intron MGP_C3HHeJ_T0054743.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65021488 65211112 + MGP_C3HHeJ_P0054743 Csrnp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054744.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65040257 65130908 + Csrnp3 protein_coding retained_intron MGP_C3HHeJ_T0054745.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65110946 65211779 + MGP_C3HHeJ_P0054745 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054746.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65112675 65211317 + MGP_C3HHeJ_P0054746 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054747.1 MGP_C3HHeJ_G0025513.1 mouse_genomes_project 2 65130417 65210886 + MGP_C3HHeJ_P0054747 Csrnp3 protein_coding protein_coding MGP_C3HHeJ_T0054707.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206626 64367016 - MGP_C3HHeJ_P0054707 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054708.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64367016 - MGP_C3HHeJ_P0054708 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054709.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64367016 - MGP_C3HHeJ_P0054709 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054710.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64367111 - MGP_C3HHeJ_P0054710 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054711.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64206637 64366963 - MGP_C3HHeJ_P0054711 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054712.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64222728 64229341 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054713.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64250293 64367434 - MGP_C3HHeJ_P0054713 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054714.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64258102 64367486 - MGP_C3HHeJ_P0054714 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054715.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64260672 64364385 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054716.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64260705 64366963 - MGP_C3HHeJ_P0054716 Cobll1 protein_coding protein_coding MGP_C3HHeJ_T0054717.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64273702 64367437 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054718.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64276259 64367793 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0054719.1 MGP_C3HHeJ_G0025509.1 mouse_genomes_project 2 64276423 64366864 - Cobll1 protein_coding processed_transcript MGP_C3HHeJ_T0017544.1 MGP_C3HHeJ_G0015176.1 mouse_genomes_project 2 33135341 33138490 + Gm13448 processed_transcript processed_transcript MGP_C3HHeJ_T0097893.1 MGP_C3HHeJ_G0036105.1 mouse_genomes_project 2 27637333 27637664 - pseudogene pseudogene MGP_C3HHeJ_T0053749.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371391 - MGP_C3HHeJ_P0053749 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053750.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30366187 - MGP_C3HHeJ_P0053750 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053751.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371328 - MGP_C3HHeJ_P0053751 Swi5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053752.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371258 - MGP_C3HHeJ_P0053752 Swi5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053753.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361317 30371398 - MGP_C3HHeJ_P0053753 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053754.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30361419 30371392 - MGP_C3HHeJ_P0053754 Swi5 protein_coding protein_coding MGP_C3HHeJ_T0053755.1 MGP_C3HHeJ_G0025335.1 mouse_genomes_project 2 30366603 30371354 - Swi5 protein_coding retained_intron MGP_C3HHeJ_T0052132.1 MGP_C3HHeJ_G0025061.1 mouse_genomes_project 2 2985496 3091194 + MGP_C3HHeJ_P0052132 Upf2 protein_coding protein_coding MGP_C3HHeJ_T0052133.1 MGP_C3HHeJ_G0025061.1 mouse_genomes_project 2 3057856 3091189 + MGP_C3HHeJ_P0052133 Upf2 protein_coding protein_coding MGP_C3HHeJ_T0052134.1 MGP_C3HHeJ_G0025061.1 mouse_genomes_project 2 3084942 3089993 + Upf2 protein_coding processed_transcript MGP_C3HHeJ_T0011408.1 MGP_C3HHeJ_G0009541.1 mouse_genomes_project 2 73350362 73350529 - Gm27421 misc_RNA misc_RNA MGP_C3HHeJ_T0013358.1 MGP_C3HHeJ_G0011462.1 mouse_genomes_project 2 36809040 36809175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056575.1 MGP_C3HHeJ_G0026064.1 mouse_genomes_project 2 121052488 121085089 - MGP_C3HHeJ_P0056575 Exd1 protein_coding protein_coding MGP_C3HHeJ_T0056576.1 MGP_C3HHeJ_G0026064.1 mouse_genomes_project 2 121052494 121078968 - MGP_C3HHeJ_P0056576 Exd1 protein_coding protein_coding MGP_C3HHeJ_T0056577.1 MGP_C3HHeJ_G0026064.1 mouse_genomes_project 2 121076306 121084656 - MGP_C3HHeJ_P0056577 Exd1 protein_coding protein_coding MGP_C3HHeJ_T0059274.1 MGP_C3HHeJ_G0026686.1 mouse_genomes_project 2 178784281 178792539 + MGP_C3HHeJ_P0059274 Tubb1 protein_coding protein_coding MGP_C3HHeJ_T0101909.1 MGP_C3HHeJ_G0039874.1 mouse_genomes_project 2 87941607 87942052 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004001.1 MGP_C3HHeJ_G0003546.1 mouse_genomes_project 2 127165387 127175279 - Gm14002 antisense antisense MGP_C3HHeJ_T0010365.1 MGP_C3HHeJ_G0008498.1 mouse_genomes_project 2 122603994 122604071 - Gm44325 miRNA miRNA MGP_C3HHeJ_T0058114.1 MGP_C3HHeJ_G0026426.1 mouse_genomes_project 2 157352442 157358286 + MGP_C3HHeJ_P0058114 Bpifa5 protein_coding protein_coding MGP_C3HHeJ_T0013717.1 MGP_C3HHeJ_G0011821.1 mouse_genomes_project 2 171001334 171001532 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010369.1 MGP_C3HHeJ_G0008502.1 mouse_genomes_project 2 128949865 128950001 - Mir3473g miRNA miRNA MGP_C3HHeJ_T0053696.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005230 30026086 + MGP_C3HHeJ_P0053696 Aif1l protein_coding protein_coding MGP_C3HHeJ_T0053697.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005247 30028305 + MGP_C3HHeJ_P0053697 Aif1l protein_coding protein_coding MGP_C3HHeJ_T0053698.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005359 30024599 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053699.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30005413 30026192 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053700.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30015240 30025878 + Aif1l protein_coding processed_transcript MGP_C3HHeJ_T0053701.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30016221 30024595 + Aif1l protein_coding processed_transcript MGP_C3HHeJ_T0053702.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30016811 30025802 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053703.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30018157 30025849 + Aif1l protein_coding processed_transcript MGP_C3HHeJ_T0053704.1 MGP_C3HHeJ_G0025328.1 mouse_genomes_project 2 30024168 30026009 + Aif1l protein_coding retained_intron MGP_C3HHeJ_T0053828.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30636974 30671843 + Fam102a protein_coding retained_intron MGP_C3HHeJ_T0053829.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30636975 30637833 + MGP_C3HHeJ_P0053829 Fam102a protein_coding protein_coding MGP_C3HHeJ_T0053830.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30637001 30671849 + MGP_C3HHeJ_P0053830 Fam102a protein_coding protein_coding MGP_C3HHeJ_T0053831.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30637375 30659941 + MGP_C3HHeJ_P0053831 Fam102a protein_coding protein_coding MGP_C3HHeJ_T0053832.1 MGP_C3HHeJ_G0025343.1 mouse_genomes_project 2 30641832 30661979 + Fam102a protein_coding processed_transcript MGP_C3HHeJ_T0055611.1 MGP_C3HHeJ_G0025835.1 mouse_genomes_project 2 90049479 90051171 + MGP_C3HHeJ_P0055611 protein_coding protein_coding MGP_C3HHeJ_T0055448.1 MGP_C3HHeJ_G0025698.1 mouse_genomes_project 2 86267506 86270893 - MGP_C3HHeJ_P0055448 protein_coding protein_coding MGP_C3HHeJ_T0013366.1 MGP_C3HHeJ_G0011470.1 mouse_genomes_project 2 37914144 37914736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052284.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9412902 9609547 - MGP_C3HHeJ_P0052284 Itga8 protein_coding protein_coding MGP_C3HHeJ_T0052285.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9413749 9609517 - MGP_C3HHeJ_P0052285 Itga8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052286.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9415340 9438534 - MGP_C3HHeJ_P0052286 Itga8 protein_coding protein_coding MGP_C3HHeJ_T0052287.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9482534 9495159 - Itga8 protein_coding retained_intron MGP_C3HHeJ_T0052288.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9523207 9549426 - Itga8 protein_coding processed_transcript MGP_C3HHeJ_T0052289.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9556761 9609547 - Itga8 protein_coding retained_intron MGP_C3HHeJ_T0052290.1 MGP_C3HHeJ_G0025083.1 mouse_genomes_project 2 9594588 9609213 - Itga8 protein_coding processed_transcript MGP_C3HHeJ_T0010402.1 MGP_C3HHeJ_G0008535.1 mouse_genomes_project 2 178007902 178008021 - Mir6340 miRNA miRNA MGP_C3HHeJ_T0053118.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660227 24661606 - Surf1 protein_coding retained_intron MGP_C3HHeJ_T0053119.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660229 24663315 - MGP_C3HHeJ_P0053119 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053120.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660229 24663147 - MGP_C3HHeJ_P0053120 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053121.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660229 24663377 - MGP_C3HHeJ_P0053121 Surf1 protein_coding protein_coding MGP_C3HHeJ_T0053122.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660423 24663167 - MGP_C3HHeJ_P0053122 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053123.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24660423 24663192 - MGP_C3HHeJ_P0053123 Surf1 protein_coding protein_coding MGP_C3HHeJ_T0053124.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24661077 24663158 - Surf1 protein_coding retained_intron MGP_C3HHeJ_T0053125.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24661321 24662339 - Surf1 protein_coding retained_intron MGP_C3HHeJ_T0053126.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24661704 24663179 - MGP_C3HHeJ_P0053126 Surf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053127.1 MGP_C3HHeJ_G0025234.1 mouse_genomes_project 2 24662303 24663192 - MGP_C3HHeJ_P0053127 Surf1 protein_coding protein_coding MGP_C3HHeJ_T0013387.1 MGP_C3HHeJ_G0011491.1 mouse_genomes_project 2 49096303 49096585 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007282.1 MGP_C3HHeJ_G0005965.1 mouse_genomes_project 2 159770139 159772736 - Gm14225 lincRNA lincRNA MGP_C3HHeJ_T0054438.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691663 50718947 - MGP_C3HHeJ_P0054438 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054439.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691677 50718729 - MGP_C3HHeJ_P0054439 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054440.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691681 50718741 - MGP_C3HHeJ_P0054440 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054441.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50691701 50695729 - MGP_C3HHeJ_P0054441 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054442.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50700662 50719204 - MGP_C3HHeJ_P0054442 Nmi protein_coding protein_coding MGP_C3HHeJ_T0054443.1 MGP_C3HHeJ_G0025462.1 mouse_genomes_project 2 50704942 50718697 - Nmi protein_coding retained_intron MGP_C3HHeJ_T0007105.1 MGP_C3HHeJ_G0005820.1 mouse_genomes_project 2 36740178 36772714 + Gm13589 lincRNA lincRNA MGP_C3HHeJ_T0003879.1 MGP_C3HHeJ_G0003462.1 mouse_genomes_project 2 30961511 30963494 + Gm13524 antisense antisense MGP_C3HHeJ_T0004060.1 MGP_C3HHeJ_G0003589.1 mouse_genomes_project 2 157849856 157852538 - Gm14198 antisense antisense MGP_C3HHeJ_T0007116.1 MGP_C3HHeJ_G0005830.1 mouse_genomes_project 2 49916798 49917279 + Gm28639 lincRNA lincRNA MGP_C3HHeJ_T0017674.1 MGP_C3HHeJ_G0015246.1 mouse_genomes_project 2 161564637 161565389 + Gm20412 processed_transcript processed_transcript MGP_C3HHeJ_T0010361.1 MGP_C3HHeJ_G0008494.1 mouse_genomes_project 2 116990135 116990224 + Mir1951 miRNA miRNA MGP_C3HHeJ_T0057125.1 MGP_C3HHeJ_G0026169.1 mouse_genomes_project 2 129200405 129205054 - MGP_C3HHeJ_P0057125 Itpripl1 protein_coding protein_coding MGP_C3HHeJ_T0057126.1 MGP_C3HHeJ_G0026169.1 mouse_genomes_project 2 129202020 129204917 - MGP_C3HHeJ_P0057126 Itpripl1 protein_coding protein_coding MGP_C3HHeJ_T0057127.1 MGP_C3HHeJ_G0026169.1 mouse_genomes_project 2 129202140 129204202 - MGP_C3HHeJ_P0057127 Itpripl1 protein_coding protein_coding MGP_C3HHeJ_T0056652.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121662459 121730119 - MGP_C3HHeJ_P0056652 Ehd4 protein_coding protein_coding MGP_C3HHeJ_T0056653.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121675987 121704224 - Ehd4 protein_coding processed_transcript MGP_C3HHeJ_T0056654.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121676172 121712073 - Ehd4 protein_coding processed_transcript MGP_C3HHeJ_T0056655.1 MGP_C3HHeJ_G0026080.1 mouse_genomes_project 2 121696906 121729972 - Ehd4 protein_coding processed_transcript MGP_C3HHeJ_T0053308.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062021 27120582 - MGP_C3HHeJ_P0053308 Ntng2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053309.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062274 27120556 - MGP_C3HHeJ_P0053309 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053310.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062301 27120497 - MGP_C3HHeJ_P0053310 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053311.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062301 27120497 - MGP_C3HHeJ_P0053311 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053312.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27062301 27120497 - MGP_C3HHeJ_P0053312 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053313.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27065948 27071482 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053314.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27066121 27072380 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053315.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27068019 27071482 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053316.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27068133 27072380 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0053317.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27071279 27125462 - MGP_C3HHeJ_P0053317 Ntng2 protein_coding protein_coding MGP_C3HHeJ_T0053318.1 MGP_C3HHeJ_G0025272.1 mouse_genomes_project 2 27101104 27120589 - Ntng2 protein_coding processed_transcript MGP_C3HHeJ_T0003940.1 MGP_C3HHeJ_G0003506.1 mouse_genomes_project 2 72932234 72939466 + Gm13707 antisense antisense MGP_C3HHeJ_T0055709.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91398844 91408504 - MGP_C3HHeJ_P0055709 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055710.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91398844 91408316 - MGP_C3HHeJ_P0055710 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055711.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91399927 91408370 - MGP_C3HHeJ_P0055711 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055712.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91400175 91402500 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055713.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91400178 91401440 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055714.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91400458 91408385 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055715.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91401694 91403230 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055716.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91402634 91408326 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055717.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91403099 91408274 - MGP_C3HHeJ_P0055717 Slc39a13 protein_coding protein_coding MGP_C3HHeJ_T0055718.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91406517 91406958 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0055719.1 MGP_C3HHeJ_G0025861.1 mouse_genomes_project 2 91407204 91408326 - Slc39a13 protein_coding processed_transcript MGP_C3HHeJ_T0054963.1 MGP_C3HHeJ_G0025557.1 mouse_genomes_project 2 70953597 70956943 - MGP_C3HHeJ_P0054963 Dlx2 protein_coding protein_coding MGP_C3HHeJ_T0054964.1 MGP_C3HHeJ_G0025557.1 mouse_genomes_project 2 70955054 70956139 - Dlx2 protein_coding retained_intron MGP_C3HHeJ_T0056754.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122360629 122468821 - MGP_C3HHeJ_P0056754 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056755.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122360629 122468635 - MGP_C3HHeJ_P0056755 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056756.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122360629 122468621 - MGP_C3HHeJ_P0056756 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056757.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122373473 122468605 - MGP_C3HHeJ_P0056757 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056758.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122379739 122468579 - MGP_C3HHeJ_P0056758 Ttbk2 protein_coding protein_coding MGP_C3HHeJ_T0056759.1 MGP_C3HHeJ_G0026094.1 mouse_genomes_project 2 122421174 122468652 - Ttbk2 protein_coding processed_transcript MGP_C3HHeJ_T0055456.1 MGP_C3HHeJ_G0025705.1 mouse_genomes_project 2 86625003 86625936 - MGP_C3HHeJ_P0055456 Olfr1086 protein_coding protein_coding MGP_C3HHeJ_T0007178.1 MGP_C3HHeJ_G0005883.1 mouse_genomes_project 2 92959753 92971137 - Gm13817 lincRNA lincRNA MGP_C3HHeJ_T0010304.1 MGP_C3HHeJ_G0008437.1 mouse_genomes_project 2 26563016 26563090 + Mir3088 miRNA miRNA MGP_C3HHeJ_T0056358.1 MGP_C3HHeJ_G0026008.1 mouse_genomes_project 2 113592012 113599011 - MGP_C3HHeJ_P0056358 Emc4 protein_coding protein_coding MGP_C3HHeJ_T0056359.1 MGP_C3HHeJ_G0026008.1 mouse_genomes_project 2 113593999 113599004 - Emc4 protein_coding processed_transcript MGP_C3HHeJ_T0057193.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129880246 129912428 - MGP_C3HHeJ_P0057193 Bub1 protein_coding protein_coding MGP_C3HHeJ_T0057194.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129883629 129884392 - Bub1 protein_coding retained_intron MGP_C3HHeJ_T0057195.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129888601 129893976 - Bub1 protein_coding processed_transcript MGP_C3HHeJ_T0057196.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129890648 129895025 - Bub1 protein_coding processed_transcript MGP_C3HHeJ_T0057197.1 MGP_C3HHeJ_G0026188.1 mouse_genomes_project 2 129904239 129912367 - Bub1 protein_coding retained_intron MGP_C3HHeJ_T0100502.1 MGP_C3HHeJ_G0038696.1 mouse_genomes_project 2 161138929 161139063 - Gm25407 snoRNA snoRNA MGP_C3HHeJ_T0056007.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94521407 94556060 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0056008.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94521407 94648645 - MGP_C3HHeJ_P0056008 Hsd17b12 protein_coding protein_coding MGP_C3HHeJ_T0056009.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94521420 94648590 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0056010.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94522238 94556355 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0056011.1 MGP_C3HHeJ_G0025905.1 mouse_genomes_project 2 94604974 94648574 - Hsd17b12 protein_coding processed_transcript MGP_C3HHeJ_T0052802.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23023425 23029219 - MGP_C3HHeJ_P0052802 Uap1l1 protein_coding protein_coding MGP_C3HHeJ_T0052803.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23025025 23026267 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052804.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23025026 23027235 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052805.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23025030 23027665 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052806.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23026879 23028194 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052807.1 MGP_C3HHeJ_G0025175.1 mouse_genomes_project 2 23027654 23029152 - Uap1l1 protein_coding processed_transcript MGP_C3HHeJ_T0053039.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128087 24135871 + MGP_C3HHeJ_P0053039 Pmpca protein_coding protein_coding MGP_C3HHeJ_T0053040.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128096 24132690 + MGP_C3HHeJ_P0053040 Pmpca protein_coding protein_coding MGP_C3HHeJ_T0053041.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128102 24129044 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0053042.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128102 24128951 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0053043.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24128104 24130715 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0053044.1 MGP_C3HHeJ_G0025221.1 mouse_genomes_project 2 24129675 24131147 + Pmpca protein_coding processed_transcript MGP_C3HHeJ_T0059282.1 MGP_C3HHeJ_G0026689.1 mouse_genomes_project 2 178982440 179055416 + MGP_C3HHeJ_P0059282 Zfp831 protein_coding protein_coding MGP_C3HHeJ_T0017585.1 MGP_C3HHeJ_G0015204.1 mouse_genomes_project 2 91380135 91389908 - Gm13778 processed_transcript processed_transcript MGP_C3HHeJ_T0017586.1 MGP_C3HHeJ_G0015204.1 mouse_genomes_project 2 91380438 91389923 - Gm13778 processed_transcript processed_transcript MGP_C3HHeJ_T0013368.1 MGP_C3HHeJ_G0011472.1 mouse_genomes_project 2 38020566 38020686 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013559.1 MGP_C3HHeJ_G0011663.1 mouse_genomes_project 2 107788123 107788593 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055415.1 MGP_C3HHeJ_G0025666.1 mouse_genomes_project 2 85548466 85549402 - MGP_C3HHeJ_P0055415 Olfr1012 protein_coding protein_coding MGP_C3HHeJ_T0007267.1 MGP_C3HHeJ_G0005954.1 mouse_genomes_project 2 150778357 150814453 - 9030622O22Rik lincRNA lincRNA MGP_C3HHeJ_T0007268.1 MGP_C3HHeJ_G0005954.1 mouse_genomes_project 2 150811005 150885777 - 9030622O22Rik lincRNA lincRNA MGP_C3HHeJ_T0007269.1 MGP_C3HHeJ_G0005954.1 mouse_genomes_project 2 150811159 150883846 - 9030622O22Rik lincRNA lincRNA MGP_C3HHeJ_T0058595.1 MGP_C3HHeJ_G0026512.1 mouse_genomes_project 2 161993060 161998643 + MGP_C3HHeJ_P0058595 Adig protein_coding protein_coding MGP_C3HHeJ_T0058596.1 MGP_C3HHeJ_G0026512.1 mouse_genomes_project 2 161993101 161998643 + MGP_C3HHeJ_P0058596 Adig protein_coding protein_coding MGP_C3HHeJ_T0058597.1 MGP_C3HHeJ_G0026512.1 mouse_genomes_project 2 161993187 161996354 + Adig protein_coding processed_transcript MGP_C3HHeJ_T0053319.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27218175 27407083 + MGP_C3HHeJ_P0053319 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053320.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27218189 27359856 + MGP_C3HHeJ_P0053320 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053321.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27249824 27391753 + MGP_C3HHeJ_P0053321 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053322.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27249824 27381741 + MGP_C3HHeJ_P0053322 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053323.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27250498 27381638 + MGP_C3HHeJ_P0053323 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053324.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27250517 27406845 + MGP_C3HHeJ_P0053324 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053325.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27250589 27359052 + MGP_C3HHeJ_P0053325 Med27 protein_coding protein_coding MGP_C3HHeJ_T0053326.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27263327 27405141 + Med27 protein_coding processed_transcript MGP_C3HHeJ_T0053327.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27377933 27381963 + Med27 protein_coding retained_intron MGP_C3HHeJ_T0053328.1 MGP_C3HHeJ_G0025273.1 mouse_genomes_project 2 27387157 27406971 + Med27 protein_coding processed_transcript MGP_C3HHeJ_T0058788.1 MGP_C3HHeJ_G0026568.1 mouse_genomes_project 2 168148232 168167155 - MGP_C3HHeJ_P0058788 Sdc4 protein_coding protein_coding MGP_C3HHeJ_T0058789.1 MGP_C3HHeJ_G0026568.1 mouse_genomes_project 2 168149880 168167856 - Sdc4 protein_coding processed_transcript MGP_C3HHeJ_T0055572.1 MGP_C3HHeJ_G0025806.1 mouse_genomes_project 2 89226187 89227123 - MGP_C3HHeJ_P0055572 Olfr1218 protein_coding protein_coding MGP_C3HHeJ_T0055224.1 MGP_C3HHeJ_G0025610.1 mouse_genomes_project 2 79143922 79148152 - MGP_C3HHeJ_P0055224 Neurod1 protein_coding protein_coding MGP_C3HHeJ_T0058523.1 MGP_C3HHeJ_G0026498.1 mouse_genomes_project 2 160777195 160809262 + MGP_C3HHeJ_P0058523 Manbal protein_coding protein_coding MGP_C3HHeJ_T0059198.1 MGP_C3HHeJ_G0026667.1 mouse_genomes_project 2 177130900 177204353 - MGP_C3HHeJ_P0059198 Bmp7 protein_coding protein_coding MGP_C3HHeJ_T0059199.1 MGP_C3HHeJ_G0026667.1 mouse_genomes_project 2 177180244 177204124 - Bmp7 protein_coding retained_intron MGP_C3HHeJ_T0055138.1 MGP_C3HHeJ_G0025601.1 mouse_genomes_project 2 76278273 76300275 + MGP_C3HHeJ_P0055138 Plekha3 protein_coding protein_coding MGP_C3HHeJ_T0055139.1 MGP_C3HHeJ_G0025601.1 mouse_genomes_project 2 76293293 76296211 + Plekha3 protein_coding processed_transcript MGP_C3HHeJ_T0007092.1 MGP_C3HHeJ_G0005811.1 mouse_genomes_project 2 31877824 31880374 - 9430024E24Rik lincRNA lincRNA MGP_C3HHeJ_T0057441.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133451877 133465763 + MGP_C3HHeJ_P0057441 Mavs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057442.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133451881 133465766 + MGP_C3HHeJ_P0057442 Mavs protein_coding protein_coding MGP_C3HHeJ_T0057443.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133451919 133465766 + MGP_C3HHeJ_P0057443 Mavs protein_coding protein_coding MGP_C3HHeJ_T0057444.1 MGP_C3HHeJ_G0026247.1 mouse_genomes_project 2 133459679 133463406 + Mavs protein_coding processed_transcript MGP_C3HHeJ_T0098108.1 MGP_C3HHeJ_G0036320.1 mouse_genomes_project 2 113696908 113697022 - n-R5s202 rRNA rRNA MGP_C3HHeJ_T0056460.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119958904 119962023 - MGP_C3HHeJ_P0056460 Srp14 protein_coding protein_coding MGP_C3HHeJ_T0056461.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119958905 119961156 - Srp14 protein_coding processed_transcript MGP_C3HHeJ_T0056462.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119958915 119961960 - Srp14 protein_coding processed_transcript MGP_C3HHeJ_T0056463.1 MGP_C3HHeJ_G0026035.1 mouse_genomes_project 2 119960837 119961947 - MGP_C3HHeJ_P0056463 Srp14 protein_coding protein_coding MGP_C3HHeJ_T0013642.1 MGP_C3HHeJ_G0011746.1 mouse_genomes_project 2 146561844 146562175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100436.1 MGP_C3HHeJ_G0038630.1 mouse_genomes_project 2 24386898 24387030 - Snora17 snoRNA snoRNA MGP_C3HHeJ_T0003961.1 MGP_C3HHeJ_G0003520.1 mouse_genomes_project 2 89078287 89086486 - Gm13763 antisense antisense MGP_C3HHeJ_T0013440.1 MGP_C3HHeJ_G0011544.1 mouse_genomes_project 2 67012736 67012819 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007168.1 MGP_C3HHeJ_G0005873.1 mouse_genomes_project 2 79145386 79152499 + Gm26755 lincRNA lincRNA MGP_C3HHeJ_T0057606.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139301827 139482578 + MGP_C3HHeJ_P0057606 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0057607.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302110 139411803 + MGP_C3HHeJ_P0057607 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0057608.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302217 139485087 + Slx4ip protein_coding processed_transcript MGP_C3HHeJ_T0057609.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302777 139481196 + Slx4ip protein_coding processed_transcript MGP_C3HHeJ_T0057610.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139302777 139485087 + MGP_C3HHeJ_P0057610 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0057611.1 MGP_C3HHeJ_G0026280.1 mouse_genomes_project 2 139316538 139482707 + MGP_C3HHeJ_P0057611 Slx4ip protein_coding protein_coding MGP_C3HHeJ_T0100441.1 MGP_C3HHeJ_G0038635.1 mouse_genomes_project 2 30300261 30300346 + Gm22192 snoRNA snoRNA MGP_C3HHeJ_T0013499.1 MGP_C3HHeJ_G0011603.1 mouse_genomes_project 2 87211478 87212940 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053252.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26393130 26411325 - MGP_C3HHeJ_P0053252 Gtf3c5 protein_coding protein_coding MGP_C3HHeJ_T0053253.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26393130 26411235 - MGP_C3HHeJ_P0053253 Gtf3c5 protein_coding protein_coding MGP_C3HHeJ_T0053254.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26395574 26399411 - Gtf3c5 protein_coding retained_intron MGP_C3HHeJ_T0053255.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26400469 26402145 - Gtf3c5 protein_coding retained_intron MGP_C3HHeJ_T0053256.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26407276 26411313 - Gtf3c5 protein_coding retained_intron MGP_C3HHeJ_T0053257.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26407809 26411034 - MGP_C3HHeJ_P0053257 Gtf3c5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053258.1 MGP_C3HHeJ_G0025261.1 mouse_genomes_project 2 26411050 26411797 - Gtf3c5 protein_coding processed_transcript MGP_C3HHeJ_T0053804.1 MGP_C3HHeJ_G0025338.1 mouse_genomes_project 2 30468763 30473532 - MGP_C3HHeJ_P0053804 1110008P14Rik protein_coding protein_coding MGP_C3HHeJ_T0053805.1 MGP_C3HHeJ_G0025338.1 mouse_genomes_project 2 30470770 30473608 - MGP_C3HHeJ_P0053805 1110008P14Rik protein_coding protein_coding MGP_C3HHeJ_T0013296.1 MGP_C3HHeJ_G0011400.1 mouse_genomes_project 2 14593784 14594590 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053464.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129345 28154748 - MGP_C3HHeJ_P0053464 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053465.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129347 28154717 - Kyat1 protein_coding processed_transcript MGP_C3HHeJ_T0053466.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129347 28154676 - MGP_C3HHeJ_P0053466 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053467.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129352 28143000 - MGP_C3HHeJ_P0053467 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053468.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129352 28154702 - MGP_C3HHeJ_P0053468 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053469.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129489 28138338 - MGP_C3HHeJ_P0053469 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053470.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28129489 28138338 - MGP_C3HHeJ_P0053470 Kyat1 protein_coding protein_coding MGP_C3HHeJ_T0053471.1 MGP_C3HHeJ_G0025293.1 mouse_genomes_project 2 28135343 28154690 - Kyat1 protein_coding processed_transcript MGP_C3HHeJ_T0055548.1 MGP_C3HHeJ_G0025784.1 mouse_genomes_project 2 88698211 88699132 + MGP_C3HHeJ_P0055548 Olfr1189 protein_coding protein_coding MGP_C3HHeJ_T0013462.1 MGP_C3HHeJ_G0011566.1 mouse_genomes_project 2 74422050 74422685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056519.1 MGP_C3HHeJ_G0026048.1 mouse_genomes_project 2 120528713 120540919 - MGP_C3HHeJ_P0056519 Ccdc32 protein_coding protein_coding MGP_C3HHeJ_T0056520.1 MGP_C3HHeJ_G0026048.1 mouse_genomes_project 2 120532654 120540919 - MGP_C3HHeJ_P0056520 Ccdc32 protein_coding protein_coding MGP_C3HHeJ_T0056521.1 MGP_C3HHeJ_G0026048.1 mouse_genomes_project 2 120532725 120540903 - MGP_C3HHeJ_P0056521 Ccdc32 protein_coding protein_coding MGP_C3HHeJ_T0013483.1 MGP_C3HHeJ_G0011587.1 mouse_genomes_project 2 81921026 81921621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013432.1 MGP_C3HHeJ_G0011536.1 mouse_genomes_project 2 63974948 63975452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052459.1 MGP_C3HHeJ_G0025111.1 mouse_genomes_project 2 16348712 16507610 - MGP_C3HHeJ_P0052459 Pip4k2a protein_coding protein_coding MGP_C3HHeJ_T0052460.1 MGP_C3HHeJ_G0025111.1 mouse_genomes_project 2 16350828 16374047 - MGP_C3HHeJ_P0052460 Pip4k2a protein_coding protein_coding MGP_C3HHeJ_T0052461.1 MGP_C3HHeJ_G0025111.1 mouse_genomes_project 2 16353954 16413687 - MGP_C3HHeJ_P0052461 Pip4k2a protein_coding protein_coding MGP_C3HHeJ_T0010396.1 MGP_C3HHeJ_G0008529.1 mouse_genomes_project 2 171588965 171589061 - Gm22355 miRNA miRNA MGP_C3HHeJ_T0055606.1 MGP_C3HHeJ_G0025831.1 mouse_genomes_project 2 89954497 89955641 - MGP_C3HHeJ_P0055606 protein_coding protein_coding MGP_C3HHeJ_T0056141.1 MGP_C3HHeJ_G0025930.1 mouse_genomes_project 2 104697055 104751566 - 4931422A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0056148.1 MGP_C3HHeJ_G0025930.1 mouse_genomes_project 2 104722605 104752075 - MGP_C3HHeJ_P0056148 4931422A03Rik protein_coding protein_coding MGP_C3HHeJ_T0056149.1 MGP_C3HHeJ_G0025930.1 mouse_genomes_project 2 104749666 104752128 - 4931422A03Rik protein_coding retained_intron MGP_C3HHeJ_T0053976.1 MGP_C3HHeJ_G0025367.1 mouse_genomes_project 2 31544325 31572685 - MGP_C3HHeJ_P0053976 Zbtb34 protein_coding protein_coding MGP_C3HHeJ_T0053977.1 MGP_C3HHeJ_G0025367.1 mouse_genomes_project 2 31544325 31569583 - MGP_C3HHeJ_P0053977 Zbtb34 protein_coding protein_coding MGP_C3HHeJ_T0053978.1 MGP_C3HHeJ_G0025367.1 mouse_genomes_project 2 31550136 31572678 - Zbtb34 protein_coding processed_transcript MGP_C3HHeJ_T0010337.1 MGP_C3HHeJ_G0008470.1 mouse_genomes_project 2 74248620 74248688 + Mir10b miRNA miRNA MGP_C3HHeJ_T0056792.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122771984 122776696 + Adal protein_coding retained_intron MGP_C3HHeJ_T0056793.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122771995 122790152 + MGP_C3HHeJ_P0056793 Adal protein_coding protein_coding MGP_C3HHeJ_T0056794.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772000 122776694 + Adal protein_coding retained_intron MGP_C3HHeJ_T0056795.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772009 122782852 + Adal protein_coding processed_transcript MGP_C3HHeJ_T0056796.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772055 122789063 + MGP_C3HHeJ_P0056796 Adal protein_coding protein_coding MGP_C3HHeJ_T0056797.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122772077 122783040 + Adal protein_coding retained_intron MGP_C3HHeJ_T0056798.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122773448 122790158 + MGP_C3HHeJ_P0056798 Adal protein_coding protein_coding MGP_C3HHeJ_T0056799.1 MGP_C3HHeJ_G0026102.1 mouse_genomes_project 2 122782615 122789813 + Adal protein_coding retained_intron MGP_C3HHeJ_T0013697.1 MGP_C3HHeJ_G0011801.1 mouse_genomes_project 2 161881294 161881583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054093.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33408116 33428672 - MGP_C3HHeJ_P0054093 Rab14 protein_coding protein_coding MGP_C3HHeJ_T0054094.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33408116 33428672 - MGP_C3HHeJ_P0054094 Rab14 protein_coding protein_coding MGP_C3HHeJ_T0054095.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33409709 33411631 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054096.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33410770 33411729 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054097.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33411183 33428524 - Rab14 protein_coding retained_intron MGP_C3HHeJ_T0054098.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33413865 33420244 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054099.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33415286 33419003 - Rab14 protein_coding retained_intron MGP_C3HHeJ_T0054100.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33417480 33428341 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054101.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33419101 33420424 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0054102.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33423560 33428534 - Rab14 protein_coding retained_intron MGP_C3HHeJ_T0054103.1 MGP_C3HHeJ_G0025384.1 mouse_genomes_project 2 33427425 33428530 - Rab14 protein_coding processed_transcript MGP_C3HHeJ_T0101876.1 MGP_C3HHeJ_G0039841.1 mouse_genomes_project 2 34565550 34566456 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013650.1 MGP_C3HHeJ_G0011754.1 mouse_genomes_project 2 148648110 148648725 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058753.1 MGP_C3HHeJ_G0026552.1 mouse_genomes_project 2 167744001 167756955 - Tomm34 protein_coding retained_intron MGP_C3HHeJ_T0058754.1 MGP_C3HHeJ_G0026552.1 mouse_genomes_project 2 167744001 167764326 - MGP_C3HHeJ_P0058754 Tomm34 protein_coding protein_coding MGP_C3HHeJ_T0058755.1 MGP_C3HHeJ_G0026552.1 mouse_genomes_project 2 167744001 167764259 - MGP_C3HHeJ_P0058755 Tomm34 protein_coding protein_coding MGP_C3HHeJ_T0001056.1 MGP_C3HHeJ_G0000993.1 mouse_genomes_project 2 74911976 74912571 - TEC TEC MGP_C3HHeJ_T0052387.1 MGP_C3HHeJ_G0025100.1 mouse_genomes_project 2 12946801 13669135 + MGP_C3HHeJ_P0052387 Malrd1 protein_coding protein_coding MGP_C3HHeJ_T0004120.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186192744 186199388 + Uckl1os antisense antisense MGP_C3HHeJ_T0004121.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186192749 186194956 + Uckl1os antisense antisense MGP_C3HHeJ_T0004122.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186192782 186194967 + Uckl1os antisense antisense MGP_C3HHeJ_T0004123.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186193753 186195246 + Uckl1os antisense antisense MGP_C3HHeJ_T0004124.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186193796 186196420 + Uckl1os antisense antisense MGP_C3HHeJ_T0004125.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186193862 186195479 + Uckl1os antisense antisense MGP_C3HHeJ_T0004126.1 MGP_C3HHeJ_G0003634.1 mouse_genomes_project 2 186196510 186199439 + Uckl1os antisense antisense MGP_C3HHeJ_T0013704.1 MGP_C3HHeJ_G0011808.1 mouse_genomes_project 2 165090315 165090791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013443.1 MGP_C3HHeJ_G0011547.1 mouse_genomes_project 2 68641570 68642072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052034.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 593009 766544 + MGP_C3HHeJ_P0052034 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052035.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 695550 768899 + MGP_C3HHeJ_P0052035 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052036.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 695570 766678 + MGP_C3HHeJ_P0052036 Fam107b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052037.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 756162 758426 + MGP_C3HHeJ_P0052037 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052038.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 756188 768897 + MGP_C3HHeJ_P0052038 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0052039.1 MGP_C3HHeJ_G0025045.1 mouse_genomes_project 2 759400 766382 + MGP_C3HHeJ_P0052039 Fam107b protein_coding protein_coding MGP_C3HHeJ_T0007294.1 MGP_C3HHeJ_G0005975.1 mouse_genomes_project 2 164768797 164808551 + Gm14243 lincRNA lincRNA MGP_C3HHeJ_T0013434.1 MGP_C3HHeJ_G0011538.1 mouse_genomes_project 2 64427027 64428219 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055995.1 MGP_C3HHeJ_G0025903.1 mouse_genomes_project 2 94445452 94481455 - MGP_C3HHeJ_P0055995 Gm27027 protein_coding protein_coding MGP_C3HHeJ_T0007208.1 MGP_C3HHeJ_G0005906.1 mouse_genomes_project 2 112003918 112010228 - Gm13942 lincRNA lincRNA MGP_C3HHeJ_T0017668.1 MGP_C3HHeJ_G0015243.1 mouse_genomes_project 2 159934117 159939370 - Gm14169 processed_transcript processed_transcript MGP_C3HHeJ_T0055292.1 MGP_C3HHeJ_G0025628.1 mouse_genomes_project 2 84072193 84171846 - MGP_C3HHeJ_P0055292 Calcrl protein_coding protein_coding MGP_C3HHeJ_T0055293.1 MGP_C3HHeJ_G0025628.1 mouse_genomes_project 2 84072226 84119493 - MGP_C3HHeJ_P0055293 Calcrl protein_coding protein_coding MGP_C3HHeJ_T0055294.1 MGP_C3HHeJ_G0025628.1 mouse_genomes_project 2 84119429 84171701 - Calcrl protein_coding processed_transcript MGP_C3HHeJ_T0053898.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30870649 30888788 - MGP_C3HHeJ_P0053898 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0053907.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30875573 30888989 - MGP_C3HHeJ_P0053907 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0053908.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30875736 30888842 - MGP_C3HHeJ_P0053908 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0053909.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30877524 30889038 - MGP_C3HHeJ_P0053909 Ttc16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053910.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30886164 30888992 - Ttc16 protein_coding retained_intron MGP_C3HHeJ_T0053911.1 MGP_C3HHeJ_G0025355.1 mouse_genomes_project 2 30887911 30889036 - MGP_C3HHeJ_P0053911 Ttc16 protein_coding protein_coding MGP_C3HHeJ_T0013666.1 MGP_C3HHeJ_G0011770.1 mouse_genomes_project 2 153485523 153486731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004016.1 MGP_C3HHeJ_G0003556.1 mouse_genomes_project 2 133373596 133385396 + Gm14232 antisense antisense MGP_C3HHeJ_T0053613.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980382 29022794 + MGP_C3HHeJ_P0053613 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053614.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980437 28982338 + Usp20 protein_coding retained_intron MGP_C3HHeJ_T0053615.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980466 29006800 + MGP_C3HHeJ_P0053615 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053616.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980500 29002155 + MGP_C3HHeJ_P0053616 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053617.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28980532 28998266 + MGP_C3HHeJ_P0053617 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053618.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994012 29001824 + MGP_C3HHeJ_P0053618 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053619.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994113 29002155 + MGP_C3HHeJ_P0053619 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053620.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994399 29022790 + MGP_C3HHeJ_P0053620 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053621.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28994405 29005601 + Usp20 protein_coding processed_transcript MGP_C3HHeJ_T0053622.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 28997029 29005630 + MGP_C3HHeJ_P0053622 Usp20 protein_coding protein_coding MGP_C3HHeJ_T0053623.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 29001766 29002932 + Usp20 protein_coding retained_intron MGP_C3HHeJ_T0053624.1 MGP_C3HHeJ_G0025315.1 mouse_genomes_project 2 29019026 29020589 + Usp20 protein_coding retained_intron MGP_C3HHeJ_T0013572.1 MGP_C3HHeJ_G0011676.1 mouse_genomes_project 2 112734302 112735240 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054190.1 MGP_C3HHeJ_G0025418.1 mouse_genomes_project 2 35290638 35291631 - MGP_C3HHeJ_P0054190 Olfr358 protein_coding protein_coding MGP_C3HHeJ_T0013435.1 MGP_C3HHeJ_G0011539.1 mouse_genomes_project 2 65331570 65331792 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057040.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127804731 127833327 - MGP_C3HHeJ_P0057040 Cops2 protein_coding protein_coding MGP_C3HHeJ_T0057041.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127806034 127833227 - MGP_C3HHeJ_P0057041 Cops2 protein_coding protein_coding MGP_C3HHeJ_T0057042.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127806037 127833327 - MGP_C3HHeJ_P0057042 Cops2 protein_coding protein_coding MGP_C3HHeJ_T0057043.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127816832 127833184 - Cops2 protein_coding processed_transcript MGP_C3HHeJ_T0057044.1 MGP_C3HHeJ_G0026153.1 mouse_genomes_project 2 127823957 127833251 - Cops2 protein_coding processed_transcript MGP_C3HHeJ_T0013500.1 MGP_C3HHeJ_G0011604.1 mouse_genomes_project 2 87281971 87282641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011429.1 MGP_C3HHeJ_G0009562.1 mouse_genomes_project 2 178614329 178614393 + Gm27899 misc_RNA misc_RNA MGP_C3HHeJ_T0055424.1 MGP_C3HHeJ_G0025675.1 mouse_genomes_project 2 85701121 85702105 - MGP_C3HHeJ_P0055424 Olfr1024 protein_coding protein_coding MGP_C3HHeJ_T0055570.1 MGP_C3HHeJ_G0025804.1 mouse_genomes_project 2 89157078 89158014 - MGP_C3HHeJ_P0055570 Olfr1216 protein_coding protein_coding MGP_C3HHeJ_T0010259.1 MGP_C3HHeJ_G0008392.1 mouse_genomes_project 2 7692238 7692336 + Mir669l miRNA miRNA MGP_C3HHeJ_T0013561.1 MGP_C3HHeJ_G0011665.1 mouse_genomes_project 2 107871522 107872020 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054517.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57064098 57098398 - MGP_C3HHeJ_P0054517 Cytip protein_coding protein_coding MGP_C3HHeJ_T0054518.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57068803 57131114 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054519.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57068888 57131124 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054520.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57069020 57094689 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054521.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57082449 57098024 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054522.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57082624 57131125 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054523.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57097880 57131129 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0054524.1 MGP_C3HHeJ_G0025479.1 mouse_genomes_project 2 57097941 57098560 - Cytip protein_coding processed_transcript MGP_C3HHeJ_T0056342.1 MGP_C3HHeJ_G0026002.1 mouse_genomes_project 2 113353299 113354946 + MGP_C3HHeJ_P0056342 protein_coding protein_coding MGP_C3HHeJ_T0003862.1 MGP_C3HHeJ_G0003447.1 mouse_genomes_project 2 24943818 24991495 + Sardhos antisense antisense MGP_C3HHeJ_T0058098.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157114485 157119069 + Bpifb4 protein_coding retained_intron MGP_C3HHeJ_T0058099.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157114494 157140501 + MGP_C3HHeJ_P0058099 Bpifb4 protein_coding protein_coding MGP_C3HHeJ_T0058100.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157117329 157140276 + MGP_C3HHeJ_P0058100 Bpifb4 protein_coding protein_coding MGP_C3HHeJ_T0058101.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157118735 157121304 + Bpifb4 protein_coding retained_intron MGP_C3HHeJ_T0058102.1 MGP_C3HHeJ_G0026421.1 mouse_genomes_project 2 157120389 157140276 + MGP_C3HHeJ_P0058102 Bpifb4 protein_coding protein_coding MGP_C3HHeJ_T0052082.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2004612 2026639 - MGP_C3HHeJ_P0052082 Mcm10 protein_coding protein_coding MGP_C3HHeJ_T0052083.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005622 2010699 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052084.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005622 2016349 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052085.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005622 2027168 - MGP_C3HHeJ_P0052085 Mcm10 protein_coding protein_coding MGP_C3HHeJ_T0052086.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2005929 2008062 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052087.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2006158 2009643 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052088.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2013811 2019890 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052089.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2018832 2020110 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0052090.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2021301 2027130 - Mcm10 protein_coding processed_transcript MGP_C3HHeJ_T0052091.1 MGP_C3HHeJ_G0025052.1 mouse_genomes_project 2 2021788 2027092 - Mcm10 protein_coding retained_intron MGP_C3HHeJ_T0055539.1 MGP_C3HHeJ_G0025776.1 mouse_genomes_project 2 88508068 88508992 - MGP_C3HHeJ_P0055539 Olfr1179 protein_coding protein_coding MGP_C3HHeJ_T0057924.1 MGP_C3HHeJ_G0026364.1 mouse_genomes_project 2 154888926 154920719 + MGP_C3HHeJ_P0057924 Rspo4 protein_coding protein_coding MGP_C3HHeJ_T0054802.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68487339 68502284 - MGP_C3HHeJ_P0054802 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054803.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68490308 68502594 - MGP_C3HHeJ_P0054803 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054804.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68493554 68501585 - MGP_C3HHeJ_P0054804 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054805.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68493597 68502617 - MGP_C3HHeJ_P0054805 Spc25 protein_coding protein_coding MGP_C3HHeJ_T0054806.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68495091 68502560 - Spc25 protein_coding processed_transcript MGP_C3HHeJ_T0054807.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68496366 68501670 - Spc25 protein_coding processed_transcript MGP_C3HHeJ_T0054808.1 MGP_C3HHeJ_G0025527.1 mouse_genomes_project 2 68502074 68502616 - Spc25 protein_coding processed_transcript MGP_C3HHeJ_T0099233.1 MGP_C3HHeJ_G0037427.1 mouse_genomes_project 2 186033816 186033919 - Gm22708 snRNA snRNA MGP_C3HHeJ_T0100514.1 MGP_C3HHeJ_G0038708.1 mouse_genomes_project 2 170969608 170969698 + Snord12 snoRNA snoRNA MGP_C3HHeJ_T0054608.1 MGP_C3HHeJ_G0025492.1 mouse_genomes_project 2 59210793 59246275 - MGP_C3HHeJ_P0054608 Cd302 protein_coding protein_coding MGP_C3HHeJ_T0054609.1 MGP_C3HHeJ_G0025492.1 mouse_genomes_project 2 59210793 59246205 - MGP_C3HHeJ_P0054609 Cd302 protein_coding protein_coding MGP_C3HHeJ_T0053263.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468058 26500691 + MGP_C3HHeJ_P0053263 Tsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053264.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468067 26519229 + MGP_C3HHeJ_P0053264 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053265.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468071 26516610 + MGP_C3HHeJ_P0053265 Tsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053266.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468071 26519229 + MGP_C3HHeJ_P0053266 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053267.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468073 26519229 + MGP_C3HHeJ_P0053267 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053268.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468080 26501937 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053269.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26468084 26494977 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053270.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26485551 26519229 + MGP_C3HHeJ_P0053270 Tsc1 protein_coding protein_coding MGP_C3HHeJ_T0053271.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26490355 26492983 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053272.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26498032 26501371 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0053273.1 MGP_C3HHeJ_G0025263.1 mouse_genomes_project 2 26500461 26501513 + Tsc1 protein_coding retained_intron MGP_C3HHeJ_T0013701.1 MGP_C3HHeJ_G0011805.1 mouse_genomes_project 2 163406274 163407140 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053070.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24324650 24335196 + MGP_C3HHeJ_P0053070 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053071.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24325692 24338496 + MGP_C3HHeJ_P0053071 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053072.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24329770 24338493 + MGP_C3HHeJ_P0053072 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053073.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24329786 24338494 + MGP_C3HHeJ_P0053073 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053074.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24329811 24338932 + MGP_C3HHeJ_P0053074 Egfl7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053075.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332439 24338493 + MGP_C3HHeJ_P0053075 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053077.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332470 24336720 + Egfl7 protein_coding processed_transcript MGP_C3HHeJ_T0053078.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332481 24336751 + MGP_C3HHeJ_P0053078 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053079.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24332498 24336301 + MGP_C3HHeJ_P0053079 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053080.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24334354 24338255 + MGP_C3HHeJ_P0053080 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053081.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24335146 24337375 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0053082.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24336331 24336784 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0053083.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24336776 24338488 + MGP_C3HHeJ_P0053083 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053084.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24336840 24338494 + MGP_C3HHeJ_P0053084 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053085.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337245 24338494 + MGP_C3HHeJ_P0053085 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053086.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337246 24338494 + MGP_C3HHeJ_P0053086 Egfl7 protein_coding protein_coding MGP_C3HHeJ_T0053087.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337257 24338102 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0053088.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337834 24338493 + Egfl7 protein_coding processed_transcript MGP_C3HHeJ_T0053089.1 MGP_C3HHeJ_G0025225.1 mouse_genomes_project 2 24337958 24338494 + Egfl7 protein_coding retained_intron MGP_C3HHeJ_T0099223.1 MGP_C3HHeJ_G0037417.1 mouse_genomes_project 2 150708292 150708399 - Gm25516 snRNA snRNA MGP_C3HHeJ_T0053681.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715417 29725906 + Abl1 protein_coding retained_intron MGP_C3HHeJ_T0053682.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715578 29735175 + Abl1 protein_coding processed_transcript MGP_C3HHeJ_T0053683.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715592 29840792 + MGP_C3HHeJ_P0053683 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053684.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29715593 29837590 + MGP_C3HHeJ_P0053684 Abl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053685.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29716506 29812484 + MGP_C3HHeJ_P0053685 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053686.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29716652 29813116 + MGP_C3HHeJ_P0053686 Abl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053687.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29794014 29841478 + MGP_C3HHeJ_P0053687 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053688.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29794244 29813116 + MGP_C3HHeJ_P0053688 Abl1 protein_coding protein_coding MGP_C3HHeJ_T0053689.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29826146 29830528 + Abl1 protein_coding retained_intron MGP_C3HHeJ_T0053690.1 MGP_C3HHeJ_G0025324.1 mouse_genomes_project 2 29833896 29835243 + Abl1 protein_coding retained_intron MGP_C3HHeJ_T0013591.1 MGP_C3HHeJ_G0011695.1 mouse_genomes_project 2 122679385 122680153 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003877.1 MGP_C3HHeJ_G0003460.1 mouse_genomes_project 2 30074064 30074765 - Gm13609 antisense antisense MGP_C3HHeJ_T0010277.1 MGP_C3HHeJ_G0008410.1 mouse_genomes_project 2 7716343 7716441 + Mir669m-2 miRNA miRNA MGP_C3HHeJ_T0010338.1 MGP_C3HHeJ_G0008471.1 mouse_genomes_project 2 75221917 75221991 + Gm24574 miRNA miRNA MGP_C3HHeJ_T0057259.1 MGP_C3HHeJ_G0026205.1 mouse_genomes_project 2 131404660 131432186 - MGP_C3HHeJ_P0057259 Ckap2l protein_coding protein_coding MGP_C3HHeJ_T0100510.1 MGP_C3HHeJ_G0038704.1 mouse_genomes_project 2 166394419 166394545 + Gm22936 snoRNA snoRNA MGP_C3HHeJ_T0055654.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106728 91142761 + MGP_C3HHeJ_P0055654 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055655.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106728 91162468 + MGP_C3HHeJ_P0055655 Agbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055656.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106729 91136186 + MGP_C3HHeJ_P0055656 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055657.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91106745 91141748 + MGP_C3HHeJ_P0055657 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055658.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107171 91139786 + MGP_C3HHeJ_P0055658 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055659.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107198 91157311 + Agbl2 protein_coding processed_transcript MGP_C3HHeJ_T0055660.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107506 91141748 + MGP_C3HHeJ_P0055660 Agbl2 protein_coding protein_coding MGP_C3HHeJ_T0055661.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107560 91141030 + MGP_C3HHeJ_P0055661 Agbl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055662.1 MGP_C3HHeJ_G0025853.1 mouse_genomes_project 2 91107993 91122234 + Agbl2 protein_coding processed_transcript MGP_C3HHeJ_T0017556.1 MGP_C3HHeJ_G0015183.1 mouse_genomes_project 2 56071205 56075003 + processed_transcript processed_transcript MGP_C3HHeJ_T0013719.1 MGP_C3HHeJ_G0011823.1 mouse_genomes_project 2 171462430 171462707 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054809.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68507959 68526072 + G6pc2 protein_coding processed_transcript MGP_C3HHeJ_T0054810.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68519358 68527230 + MGP_C3HHeJ_P0054810 G6pc2 protein_coding protein_coding MGP_C3HHeJ_T0054811.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68519385 68527230 + MGP_C3HHeJ_P0054811 G6pc2 protein_coding protein_coding MGP_C3HHeJ_T0054812.1 MGP_C3HHeJ_G0025528.1 mouse_genomes_project 2 68519415 68526224 + G6pc2 protein_coding processed_transcript MGP_C3HHeJ_T0013715.1 MGP_C3HHeJ_G0011819.1 mouse_genomes_project 2 170907632 170910679 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058270.1 MGP_C3HHeJ_G0026462.1 mouse_genomes_project 2 159120300 159121988 - MGP_C3HHeJ_P0058270 BC029722 protein_coding protein_coding MGP_C3HHeJ_T0059516.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185971980 185987837 + MGP_C3HHeJ_P0059516 Zgpat protein_coding protein_coding MGP_C3HHeJ_T0059517.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185972463 185987825 + MGP_C3HHeJ_P0059517 Zgpat protein_coding protein_coding MGP_C3HHeJ_T0059518.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185972481 185990671 + MGP_C3HHeJ_P0059518 Zgpat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059519.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185972510 185990669 + Zgpat protein_coding retained_intron MGP_C3HHeJ_T0059520.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185985436 185986862 + Zgpat protein_coding retained_intron MGP_C3HHeJ_T0059521.1 MGP_C3HHeJ_G0026737.1 mouse_genomes_project 2 185986681 185987781 + MGP_C3HHeJ_P0059521 Zgpat protein_coding protein_coding MGP_C3HHeJ_T0056025.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224266 102240485 - MGP_C3HHeJ_P0056025 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056026.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224331 102296646 - MGP_C3HHeJ_P0056026 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056027.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224367 102296598 - MGP_C3HHeJ_P0056027 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056028.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102224371 102249233 - B230118H07Rik protein_coding processed_transcript MGP_C3HHeJ_T0056029.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102240394 102295960 - MGP_C3HHeJ_P0056029 B230118H07Rik protein_coding protein_coding MGP_C3HHeJ_T0056030.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102277036 102296665 - B230118H07Rik protein_coding retained_intron MGP_C3HHeJ_T0056031.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102277562 102288743 - B230118H07Rik protein_coding retained_intron MGP_C3HHeJ_T0056032.1 MGP_C3HHeJ_G0025909.1 mouse_genomes_project 2 102278072 102317135 - B230118H07Rik protein_coding retained_intron MGP_C3HHeJ_T0054283.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37358646 37369198 + Arpc5l protein_coding processed_transcript MGP_C3HHeJ_T0054284.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37361362 37369749 + MGP_C3HHeJ_P0054284 Arpc5l protein_coding protein_coding MGP_C3HHeJ_T0054285.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37361427 37367771 + Arpc5l protein_coding processed_transcript MGP_C3HHeJ_T0054286.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37361443 37369265 + MGP_C3HHeJ_P0054286 Arpc5l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054287.1 MGP_C3HHeJ_G0025442.1 mouse_genomes_project 2 37363304 37369749 + Arpc5l protein_coding processed_transcript MGP_C3HHeJ_T0100465.1 MGP_C3HHeJ_G0038659.1 mouse_genomes_project 2 80600215 80600346 + Gm22652 snoRNA snoRNA MGP_C3HHeJ_T0056873.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123029888 123053417 - MGP_C3HHeJ_P0056873 Catsper2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056874.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123030273 123053572 - MGP_C3HHeJ_P0056874 Catsper2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056875.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123031614 123053600 - MGP_C3HHeJ_P0056875 Catsper2 protein_coding protein_coding MGP_C3HHeJ_T0056876.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123031616 123035606 - Catsper2 protein_coding retained_intron MGP_C3HHeJ_T0056877.1 MGP_C3HHeJ_G0026110.1 mouse_genomes_project 2 123050053 123052099 - Catsper2 protein_coding retained_intron MGP_C3HHeJ_T0013538.1 MGP_C3HHeJ_G0011642.1 mouse_genomes_project 2 101028842 101029629 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058585.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888382 161989702 + MGP_C3HHeJ_P0058585 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058586.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888387 161989702 + MGP_C3HHeJ_P0058586 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058587.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888410 161915484 + Ralgapb protein_coding retained_intron MGP_C3HHeJ_T0058588.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888413 161927059 + Ralgapb protein_coding retained_intron MGP_C3HHeJ_T0058589.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888416 161930699 + Ralgapb protein_coding processed_transcript MGP_C3HHeJ_T0058590.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888485 161988109 + MGP_C3HHeJ_P0058590 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058591.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161888636 161908328 + MGP_C3HHeJ_P0058591 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058592.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161923966 161989702 + MGP_C3HHeJ_P0058592 Ralgapb protein_coding protein_coding MGP_C3HHeJ_T0058593.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161953066 161962698 + Ralgapb protein_coding retained_intron MGP_C3HHeJ_T0058594.1 MGP_C3HHeJ_G0026511.1 mouse_genomes_project 2 161967005 161973989 + Ralgapb protein_coding processed_transcript MGP_C3HHeJ_T0101884.1 MGP_C3HHeJ_G0039849.1 mouse_genomes_project 2 37323539 37327661 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013733.1 MGP_C3HHeJ_G0011837.1 mouse_genomes_project 2 183877378 183878129 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017568.1 MGP_C3HHeJ_G0015192.1 mouse_genomes_project 2 74205807 74216557 + Gm28309 processed_transcript processed_transcript MGP_C3HHeJ_T0057549.1 MGP_C3HHeJ_G0026268.1 mouse_genomes_project 2 135152779 135165293 - MGP_C3HHeJ_P0057549 Lrrn4 protein_coding protein_coding MGP_C3HHeJ_T0004074.1 MGP_C3HHeJ_G0003602.1 mouse_genomes_project 2 164408902 164461712 - Gm16751 antisense antisense MGP_C3HHeJ_T0013304.1 MGP_C3HHeJ_G0011408.1 mouse_genomes_project 2 16148567 16148829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054406.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48279348 48440601 + MGP_C3HHeJ_P0054406 Kif5c protein_coding protein_coding MGP_C3HHeJ_T0054407.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48364315 48396243 + MGP_C3HHeJ_P0054407 Kif5c protein_coding protein_coding MGP_C3HHeJ_T0054408.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48387790 48401576 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0054409.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48398602 48401567 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0054410.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48410516 48423379 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0054411.1 MGP_C3HHeJ_G0025455.1 mouse_genomes_project 2 48418181 48424900 + Kif5c protein_coding processed_transcript MGP_C3HHeJ_T0007125.1 MGP_C3HHeJ_G0005837.1 mouse_genomes_project 2 54312076 54316423 - Gm26794 lincRNA lincRNA MGP_C3HHeJ_T0004103.1 MGP_C3HHeJ_G0003623.1 mouse_genomes_project 2 174695142 174697513 + Gm14637 antisense antisense MGP_C3HHeJ_T0007201.1 MGP_C3HHeJ_G0005899.1 mouse_genomes_project 2 106273450 106274310 + 4930527A07Rik lincRNA lincRNA MGP_C3HHeJ_T0013517.1 MGP_C3HHeJ_G0011621.1 mouse_genomes_project 2 92012306 92012544 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017648.1 MGP_C3HHeJ_G0015231.1 mouse_genomes_project 2 131340696 131362481 - 9830144P21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017649.1 MGP_C3HHeJ_G0015231.1 mouse_genomes_project 2 131360226 131366614 - 9830144P21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0052291.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736280 - Fam188a protein_coding processed_transcript MGP_C3HHeJ_T0052292.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736302 - MGP_C3HHeJ_P0052292 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052293.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736280 - MGP_C3HHeJ_P0052293 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052294.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736276 - MGP_C3HHeJ_P0052294 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052295.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660237 9736267 - MGP_C3HHeJ_P0052295 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052296.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660240 9736284 - MGP_C3HHeJ_P0052296 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052297.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660606 9669886 - MGP_C3HHeJ_P0052297 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052298.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660892 9713867 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052299.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9660940 9736120 - Fam188a protein_coding processed_transcript MGP_C3HHeJ_T0052300.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9663904 9736242 - MGP_C3HHeJ_P0052300 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052301.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9669759 9736263 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052302.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9677273 9679118 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052303.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9677442 9736281 - MGP_C3HHeJ_P0052303 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052304.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9701960 9702796 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052305.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9702661 9725737 - MGP_C3HHeJ_P0052305 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052306.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9715640 9736273 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052307.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9716025 9725876 - Fam188a protein_coding retained_intron MGP_C3HHeJ_T0052308.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9717040 9736223 - MGP_C3HHeJ_P0052308 Fam188a protein_coding protein_coding MGP_C3HHeJ_T0052309.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9717051 9736081 - MGP_C3HHeJ_P0052309 Fam188a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052310.1 MGP_C3HHeJ_G0025084.1 mouse_genomes_project 2 9719979 9720711 - Fam188a protein_coding processed_transcript MGP_C3HHeJ_T0058756.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167763478 167781453 + MGP_C3HHeJ_P0058756 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0058757.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167769029 167856490 + MGP_C3HHeJ_P0058757 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0058758.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167776458 167793828 + Stk4 protein_coding processed_transcript MGP_C3HHeJ_T0058759.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167796509 167815507 + MGP_C3HHeJ_P0058759 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0058760.1 MGP_C3HHeJ_G0026553.1 mouse_genomes_project 2 167806998 167856490 + MGP_C3HHeJ_P0058760 Stk4 protein_coding protein_coding MGP_C3HHeJ_T0057662.1 MGP_C3HHeJ_G0026294.1 mouse_genomes_project 2 145753205 145756446 + MGP_C3HHeJ_P0057662 Otor protein_coding protein_coding MGP_C3HHeJ_T0007095.1 MGP_C3HHeJ_G0005813.1 mouse_genomes_project 2 32155736 32157815 + Gm13404 lincRNA lincRNA MGP_C3HHeJ_T0013349.1 MGP_C3HHeJ_G0011453.1 mouse_genomes_project 2 34406580 34406945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003956.1 MGP_C3HHeJ_G0003516.1 mouse_genomes_project 2 80126128 80131977 + Gm13752 antisense antisense MGP_C3HHeJ_T0054772.1 MGP_C3HHeJ_G0025520.1 mouse_genomes_project 2 66673527 66752339 + MGP_C3HHeJ_P0054772 Xirp2 protein_coding protein_coding MGP_C3HHeJ_T0054773.1 MGP_C3HHeJ_G0025520.1 mouse_genomes_project 2 66673527 66752347 + MGP_C3HHeJ_P0054773 Xirp2 protein_coding protein_coding MGP_C3HHeJ_T0100507.1 MGP_C3HHeJ_G0038701.1 mouse_genomes_project 2 161848542 161848675 + Gm25129 snoRNA snoRNA MGP_C3HHeJ_T0100495.1 MGP_C3HHeJ_G0038689.1 mouse_genomes_project 2 153840849 153840993 + Gm23598 snoRNA snoRNA MGP_C3HHeJ_T0004085.1 MGP_C3HHeJ_G0003609.1 mouse_genomes_project 2 167836670 167841387 + Gm11455 antisense antisense MGP_C3HHeJ_T0054116.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635260 33668055 - MGP_C3HHeJ_P0054116 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054117.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635260 33703544 - MGP_C3HHeJ_P0054117 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054118.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635264 33703727 - MGP_C3HHeJ_P0054118 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054119.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33635264 33703527 - MGP_C3HHeJ_P0054119 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054120.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33637190 33658403 - MGP_C3HHeJ_P0054120 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054121.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33637190 33658403 - MGP_C3HHeJ_P0054121 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054122.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33643000 33678426 - MGP_C3HHeJ_P0054122 Ggta1 protein_coding protein_coding MGP_C3HHeJ_T0054123.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33658404 33682156 - Ggta1 protein_coding processed_transcript MGP_C3HHeJ_T0054124.1 MGP_C3HHeJ_G0025389.1 mouse_genomes_project 2 33667935 33705406 - Ggta1 protein_coding processed_transcript MGP_C3HHeJ_T0052077.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991065 2000650 + MGP_C3HHeJ_P0052077 Ucma protein_coding protein_coding MGP_C3HHeJ_T0052078.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991068 1996222 + Ucma protein_coding processed_transcript MGP_C3HHeJ_T0052079.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991094 2000642 + MGP_C3HHeJ_P0052079 Ucma protein_coding protein_coding MGP_C3HHeJ_T0052080.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991124 2000647 + MGP_C3HHeJ_P0052080 Ucma protein_coding protein_coding MGP_C3HHeJ_T0052081.1 MGP_C3HHeJ_G0025051.1 mouse_genomes_project 2 1991127 2000547 + MGP_C3HHeJ_P0052081 Ucma protein_coding protein_coding MGP_C3HHeJ_T0004077.1 MGP_C3HHeJ_G0003605.1 mouse_genomes_project 2 167161196 167162245 + 2310001K24Rik antisense antisense MGP_C3HHeJ_T0004078.1 MGP_C3HHeJ_G0003605.1 mouse_genomes_project 2 167161784 167162243 + 2310001K24Rik antisense antisense MGP_C3HHeJ_T0100493.1 MGP_C3HHeJ_G0038687.1 mouse_genomes_project 2 151485842 151485954 + Gm25866 snoRNA snoRNA MGP_C3HHeJ_T0055551.1 MGP_C3HHeJ_G0025787.1 mouse_genomes_project 2 88836109 88836726 - MGP_C3HHeJ_P0055551 protein_coding protein_coding MGP_C3HHeJ_T0057238.1 MGP_C3HHeJ_G0026200.1 mouse_genomes_project 2 131159672 131170402 - MGP_C3HHeJ_P0057238 protein_coding protein_coding MGP_C3HHeJ_T0054404.1 MGP_C3HHeJ_G0025454.1 mouse_genomes_project 2 48110788 48211217 + MGP_C3HHeJ_P0054404 Epc2 protein_coding protein_coding MGP_C3HHeJ_T0054405.1 MGP_C3HHeJ_G0025454.1 mouse_genomes_project 2 48188143 48196350 + MGP_C3HHeJ_P0054405 Epc2 protein_coding protein_coding MGP_C3HHeJ_T0013414.1 MGP_C3HHeJ_G0011518.1 mouse_genomes_project 2 57273869 57282079 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099187.1 MGP_C3HHeJ_G0037381.1 mouse_genomes_project 2 35572794 35572901 + Gm22306 snRNA snRNA MGP_C3HHeJ_T0010284.1 MGP_C3HHeJ_G0008417.1 mouse_genomes_project 2 7719958 7720056 + Mir297a-4 miRNA miRNA MGP_C3HHeJ_T0059278.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178799735 178807512 - MGP_C3HHeJ_P0059278 Slmo2 protein_coding protein_coding MGP_C3HHeJ_T0059279.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178800340 178807583 - MGP_C3HHeJ_P0059279 Slmo2 protein_coding protein_coding MGP_C3HHeJ_T0059280.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178803818 178807540 - Slmo2 protein_coding retained_intron MGP_C3HHeJ_T0059281.1 MGP_C3HHeJ_G0026688.1 mouse_genomes_project 2 178804027 178807580 - MGP_C3HHeJ_P0059281 Slmo2 protein_coding protein_coding MGP_C3HHeJ_T0057517.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134799404 - Gpcpd1 protein_coding retained_intron MGP_C3HHeJ_T0057518.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835532 - MGP_C3HHeJ_P0057518 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057519.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835477 - MGP_C3HHeJ_P0057519 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057520.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835486 - MGP_C3HHeJ_P0057520 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057521.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835547 - MGP_C3HHeJ_P0057521 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057522.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786452 134835534 - MGP_C3HHeJ_P0057522 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057523.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134786453 134835547 - MGP_C3HHeJ_P0057523 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057524.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134790095 134835432 - MGP_C3HHeJ_P0057524 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057525.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134791521 134795502 - MGP_C3HHeJ_P0057525 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057526.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134807840 134835486 - MGP_C3HHeJ_P0057526 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057527.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134811292 134844988 - MGP_C3HHeJ_P0057527 Gpcpd1 protein_coding protein_coding MGP_C3HHeJ_T0057528.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134811404 134835516 - Gpcpd1 protein_coding processed_transcript MGP_C3HHeJ_T0057529.1 MGP_C3HHeJ_G0026262.1 mouse_genomes_project 2 134821881 134835545 - Gpcpd1 protein_coding processed_transcript MGP_C3HHeJ_T0056059.1 MGP_C3HHeJ_G0025917.1 mouse_genomes_project 2 103157360 103160502 - MGP_C3HHeJ_P0056059 protein_coding protein_coding MGP_C3HHeJ_T0007196.1 MGP_C3HHeJ_G0005895.1 mouse_genomes_project 2 103931743 103935892 - Gm13869 lincRNA lincRNA MGP_C3HHeJ_T0054514.1 MGP_C3HHeJ_G0025477.1 mouse_genomes_project 2 56935749 56982580 + MGP_C3HHeJ_P0054514 Galnt5 protein_coding protein_coding MGP_C3HHeJ_T0054515.1 MGP_C3HHeJ_G0025477.1 mouse_genomes_project 2 56935749 56976590 + MGP_C3HHeJ_P0054515 Galnt5 protein_coding protein_coding MGP_C3HHeJ_T0001037.1 MGP_C3HHeJ_G0000974.1 mouse_genomes_project 2 34527989 34530013 - TEC TEC MGP_C3HHeJ_T0007311.1 MGP_C3HHeJ_G0005991.1 mouse_genomes_project 2 170369330 170372807 - Gm14267 lincRNA lincRNA MGP_C3HHeJ_T0100496.1 MGP_C3HHeJ_G0038690.1 mouse_genomes_project 2 154024083 154024212 + Gm22187 snoRNA snoRNA MGP_C3HHeJ_T0059110.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172190437 172212693 - MGP_C3HHeJ_P0059110 Dpm1 protein_coding protein_coding MGP_C3HHeJ_T0059111.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191670 172199054 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059112.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191670 172212905 - MGP_C3HHeJ_P0059112 Dpm1 protein_coding protein_coding MGP_C3HHeJ_T0059113.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191671 172197319 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059114.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191905 172194651 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059115.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191931 172212642 - MGP_C3HHeJ_P0059115 Dpm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059116.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172191977 172205629 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059117.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172192773 172212390 - Dpm1 protein_coding processed_transcript MGP_C3HHeJ_T0059118.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172198966 172212544 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0059119.1 MGP_C3HHeJ_G0026642.1 mouse_genomes_project 2 172202268 172212676 - Dpm1 protein_coding retained_intron MGP_C3HHeJ_T0058855.1 MGP_C3HHeJ_G0026593.1 mouse_genomes_project 2 168564603 168582036 + MGP_C3HHeJ_P0058855 Zswim3 protein_coding protein_coding MGP_C3HHeJ_T0054215.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35733393 35787232 + MGP_C3HHeJ_P0054215 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054216.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35733399 35858991 + MGP_C3HHeJ_P0054216 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054217.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35733410 35779813 + Rabgap1 protein_coding retained_intron MGP_C3HHeJ_T0054218.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35741747 35743900 + Rabgap1 protein_coding processed_transcript MGP_C3HHeJ_T0054219.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35742356 35766784 + MGP_C3HHeJ_P0054219 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054220.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35742356 35837038 + MGP_C3HHeJ_P0054220 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054221.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35742378 35859008 + MGP_C3HHeJ_P0054221 Rabgap1 protein_coding protein_coding MGP_C3HHeJ_T0054223.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35782509 35785589 + Rabgap1 protein_coding retained_intron MGP_C3HHeJ_T0054224.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35783573 35801414 + Rabgap1 protein_coding processed_transcript MGP_C3HHeJ_T0054226.1 MGP_C3HHeJ_G0025429.1 mouse_genomes_project 2 35808604 35857607 + Rabgap1 protein_coding processed_transcript MGP_C3HHeJ_T0052455.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16194788 16199641 + Spag6 protein_coding processed_transcript MGP_C3HHeJ_T0052456.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16194808 16199794 + Spag6 protein_coding processed_transcript MGP_C3HHeJ_T0052457.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16199779 16254979 + MGP_C3HHeJ_P0052457 Spag6 protein_coding protein_coding MGP_C3HHeJ_T0052458.1 MGP_C3HHeJ_G0025110.1 mouse_genomes_project 2 16199840 16234441 + MGP_C3HHeJ_P0052458 Spag6 protein_coding protein_coding MGP_C3HHeJ_T0013371.1 MGP_C3HHeJ_G0011475.1 mouse_genomes_project 2 38661691 38662208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007256.1 MGP_C3HHeJ_G0005944.1 mouse_genomes_project 2 139614448 139615198 + Gm28214 lincRNA lincRNA MGP_C3HHeJ_T0058964.1 MGP_C3HHeJ_G0026615.1 mouse_genomes_project 2 169298015 169313312 + MGP_C3HHeJ_P0058964 Slc2a10 protein_coding protein_coding MGP_C3HHeJ_T0058965.1 MGP_C3HHeJ_G0026615.1 mouse_genomes_project 2 169302666 169308174 + Slc2a10 protein_coding processed_transcript MGP_C3HHeJ_T0010397.1 MGP_C3HHeJ_G0008530.1 mouse_genomes_project 2 172036509 172036587 - Gm24327 miRNA miRNA MGP_C3HHeJ_T0003826.1 MGP_C3HHeJ_G0003421.1 mouse_genomes_project 2 8777423 8786181 + Gm10851 antisense antisense MGP_C3HHeJ_T0054627.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59732872 59956095 - MGP_C3HHeJ_P0054627 Rbms1 protein_coding protein_coding MGP_C3HHeJ_T0054628.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59735541 59870768 - MGP_C3HHeJ_P0054628 Rbms1 protein_coding protein_coding MGP_C3HHeJ_T0054629.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59736310 59870800 - MGP_C3HHeJ_P0054629 Rbms1 protein_coding protein_coding MGP_C3HHeJ_T0054630.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59737142 59745885 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054631.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59739017 59764310 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054632.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59830672 59877385 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054633.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59830672 59878360 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054634.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59877541 59877838 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0054635.1 MGP_C3HHeJ_G0025496.1 mouse_genomes_project 2 59877753 59878326 - Rbms1 protein_coding processed_transcript MGP_C3HHeJ_T0097897.1 MGP_C3HHeJ_G0036109.1 mouse_genomes_project 2 111553727 111553936 - pseudogene pseudogene MGP_C3HHeJ_T0057838.1 MGP_C3HHeJ_G0026344.1 mouse_genomes_project 2 153082382 153205938 + MGP_C3HHeJ_P0057838 protein_coding protein_coding MGP_C3HHeJ_T0058743.1 MGP_C3HHeJ_G0026548.1 mouse_genomes_project 2 167531241 167537053 + MGP_C3HHeJ_P0058743 Kcnk15 protein_coding protein_coding MGP_C3HHeJ_T0058744.1 MGP_C3HHeJ_G0026548.1 mouse_genomes_project 2 167531323 167537857 + MGP_C3HHeJ_P0058744 Kcnk15 protein_coding protein_coding MGP_C3HHeJ_T0013527.1 MGP_C3HHeJ_G0011631.1 mouse_genomes_project 2 96151347 96151486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054817.1 MGP_C3HHeJ_G0025530.1 mouse_genomes_project 2 68696283 68720134 + MGP_C3HHeJ_P0054817 Dhrs9 protein_coding protein_coding MGP_C3HHeJ_T0101930.1 MGP_C3HHeJ_G0039895.1 mouse_genomes_project 2 151795036 151799009 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052772.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052772 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052773.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969807 - MGP_C3HHeJ_P0052773 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052774.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969740 - MGP_C3HHeJ_P0052774 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052775.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052775 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052776.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052776 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052777.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969740 - MGP_C3HHeJ_P0052777 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052778.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969740 - MGP_C3HHeJ_P0052778 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052779.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941643 22969715 - MGP_C3HHeJ_P0052779 Grin1 protein_coding protein_coding MGP_C3HHeJ_T0052780.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22941819 22954435 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052781.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22942520 22947142 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052782.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22954130 22955720 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052783.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22954233 22956017 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052784.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22961420 22969746 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0052785.1 MGP_C3HHeJ_G0025172.1 mouse_genomes_project 2 22965020 22969783 - Grin1 protein_coding processed_transcript MGP_C3HHeJ_T0057663.1 MGP_C3HHeJ_G0026295.1 mouse_genomes_project 2 146237903 146494361 + MGP_C3HHeJ_P0057663 Pcsk2 protein_coding protein_coding MGP_C3HHeJ_T0057664.1 MGP_C3HHeJ_G0026295.1 mouse_genomes_project 2 146238018 146268270 + Pcsk2 protein_coding processed_transcript MGP_C3HHeJ_T0055023.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72851639 72896903 - MGP_C3HHeJ_P0055023 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055024.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72852091 72896743 - MGP_C3HHeJ_P0055024 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055025.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72853123 72896774 - MGP_C3HHeJ_P0055025 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055026.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72857780 72872842 - MGP_C3HHeJ_P0055026 Gpr155 protein_coding protein_coding MGP_C3HHeJ_T0055027.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72861025 72896729 - Gpr155 protein_coding processed_transcript MGP_C3HHeJ_T0055028.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72861025 72896729 - Gpr155 protein_coding retained_intron MGP_C3HHeJ_T0055029.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72872750 72880460 - Gpr155 protein_coding processed_transcript MGP_C3HHeJ_T0055030.1 MGP_C3HHeJ_G0025569.1 mouse_genomes_project 2 72891736 72896742 - Gpr155 protein_coding retained_intron MGP_C3HHeJ_T0059231.1 MGP_C3HHeJ_G0026677.1 mouse_genomes_project 2 177966219 178014216 + MGP_C3HHeJ_P0059231 Rab22a protein_coding protein_coding MGP_C3HHeJ_T0059232.1 MGP_C3HHeJ_G0026677.1 mouse_genomes_project 2 177966219 178014188 + MGP_C3HHeJ_P0059232 Rab22a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059233.1 MGP_C3HHeJ_G0026677.1 mouse_genomes_project 2 177966315 178008027 + MGP_C3HHeJ_P0059233 Rab22a protein_coding protein_coding MGP_C3HHeJ_T0056482.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120210299 120231881 - MGP_C3HHeJ_P0056482 Plcb2 protein_coding protein_coding MGP_C3HHeJ_T0056483.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120210778 120231802 - MGP_C3HHeJ_P0056483 Plcb2 protein_coding protein_coding MGP_C3HHeJ_T0056484.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120210962 120214153 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0056485.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120211481 120212524 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0056486.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120213599 120216892 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0056487.1 MGP_C3HHeJ_G0026040.1 mouse_genomes_project 2 120217020 120231834 - Plcb2 protein_coding retained_intron MGP_C3HHeJ_T0058161.1 MGP_C3HHeJ_G0026441.1 mouse_genomes_project 2 157873141 157920534 + Chmp4b protein_coding processed_transcript MGP_C3HHeJ_T0058162.1 MGP_C3HHeJ_G0026441.1 mouse_genomes_project 2 157878635 157920539 + MGP_C3HHeJ_P0058162 Chmp4b protein_coding protein_coding MGP_C3HHeJ_T0058163.1 MGP_C3HHeJ_G0026441.1 mouse_genomes_project 2 157914580 157920035 + Chmp4b protein_coding retained_intron MGP_C3HHeJ_T0013582.1 MGP_C3HHeJ_G0011686.1 mouse_genomes_project 2 115985709 115986491 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013628.1 MGP_C3HHeJ_G0011732.1 mouse_genomes_project 2 139156245 139156715 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013605.1 MGP_C3HHeJ_G0011709.1 mouse_genomes_project 2 131500132 131500233 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101927.1 MGP_C3HHeJ_G0039892.1 mouse_genomes_project 2 131516570 131517696 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017705.1 MGP_C3HHeJ_G0015260.1 mouse_genomes_project 2 184512925 184515077 + 4921531C22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017706.1 MGP_C3HHeJ_G0015260.1 mouse_genomes_project 2 184513512 184514051 + 4921531C22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0057957.1 MGP_C3HHeJ_G0026375.1 mouse_genomes_project 2 155433552 155441418 - MGP_C3HHeJ_P0057957 Nrsn2 protein_coding protein_coding MGP_C3HHeJ_T0055286.1 MGP_C3HHeJ_G0025625.1 mouse_genomes_project 2 83606706 83671690 + MGP_C3HHeJ_P0055286 Fam171b protein_coding protein_coding MGP_C3HHeJ_T0055287.1 MGP_C3HHeJ_G0025625.1 mouse_genomes_project 2 83654857 83657235 + Fam171b protein_coding processed_transcript MGP_C3HHeJ_T0057236.1 MGP_C3HHeJ_G0026199.1 mouse_genomes_project 2 131083898 131134702 + MGP_C3HHeJ_P0057236 Zc3h6 protein_coding protein_coding MGP_C3HHeJ_T0057237.1 MGP_C3HHeJ_G0026199.1 mouse_genomes_project 2 131083905 131110379 + MGP_C3HHeJ_P0057237 Zc3h6 protein_coding protein_coding MGP_C3HHeJ_T0057619.1 MGP_C3HHeJ_G0026284.1 mouse_genomes_project 2 142222368 142305657 + MGP_C3HHeJ_P0057619 Ism1 protein_coding protein_coding MGP_C3HHeJ_T0057620.1 MGP_C3HHeJ_G0026284.1 mouse_genomes_project 2 142222368 142305658 + MGP_C3HHeJ_P0057620 Ism1 protein_coding protein_coding MGP_C3HHeJ_T0057235.1 MGP_C3HHeJ_G0026198.1 mouse_genomes_project 2 131083085 131084222 - MGP_C3HHeJ_P0057235 Gm10762 protein_coding protein_coding MGP_C3HHeJ_T0058607.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162161735 162255993 + Ppp1r16b protein_coding retained_intron MGP_C3HHeJ_T0058608.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162161735 162263287 + MGP_C3HHeJ_P0058608 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0058609.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162163070 162263287 + MGP_C3HHeJ_P0058609 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0058610.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162163456 162263287 + MGP_C3HHeJ_P0058610 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0058611.1 MGP_C3HHeJ_G0026516.1 mouse_genomes_project 2 162192257 162263287 + MGP_C3HHeJ_P0058611 Ppp1r16b protein_coding protein_coding MGP_C3HHeJ_T0057584.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138436973 138444286 + MGP_C3HHeJ_P0057584 Lamp5 protein_coding protein_coding MGP_C3HHeJ_T0057585.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138442681 138456969 + MGP_C3HHeJ_P0057585 Lamp5 protein_coding protein_coding MGP_C3HHeJ_T0057586.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138443006 138446249 + Lamp5 protein_coding retained_intron MGP_C3HHeJ_T0057587.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138443006 138443968 + Lamp5 protein_coding processed_transcript MGP_C3HHeJ_T0057588.1 MGP_C3HHeJ_G0026275.1 mouse_genomes_project 2 138444185 138456957 + Lamp5 protein_coding processed_transcript MGP_C3HHeJ_T0056435.1 MGP_C3HHeJ_G0026027.1 mouse_genomes_project 2 118276982 118277915 - MGP_C3HHeJ_P0056435 Olfr1466 protein_coding protein_coding MGP_C3HHeJ_T0003897.1 MGP_C3HHeJ_G0003476.1 mouse_genomes_project 2 37350011 37351557 - Gm13496 antisense antisense MGP_C3HHeJ_T0003938.1 MGP_C3HHeJ_G0003504.1 mouse_genomes_project 2 72867401 72874664 + Gm13703 antisense antisense MGP_C3HHeJ_T0007179.1 MGP_C3HHeJ_G0005884.1 mouse_genomes_project 2 93172315 93191365 + Gm13816 lincRNA lincRNA MGP_C3HHeJ_T0100428.1 MGP_C3HHeJ_G0038622.1 mouse_genomes_project 2 7273993 7274121 - Gm23608 snoRNA snoRNA MGP_C3HHeJ_T0017573.1 MGP_C3HHeJ_G0015197.1 mouse_genomes_project 2 84822044 84829894 - processed_transcript processed_transcript MGP_C3HHeJ_T0056450.1 MGP_C3HHeJ_G0026032.1 mouse_genomes_project 2 119680466 119734063 - MGP_C3HHeJ_P0056450 Fsip1 protein_coding protein_coding MGP_C3HHeJ_T0056451.1 MGP_C3HHeJ_G0026032.1 mouse_genomes_project 2 119721503 119734053 - MGP_C3HHeJ_P0056451 Fsip1 protein_coding protein_coding MGP_C3HHeJ_T0054185.1 MGP_C3HHeJ_G0025413.1 mouse_genomes_project 2 35169620 35170556 - MGP_C3HHeJ_P0054185 Olfr353 protein_coding protein_coding MGP_C3HHeJ_T0053250.1 MGP_C3HHeJ_G0025260.1 mouse_genomes_project 2 26380239 26387807 - MGP_C3HHeJ_P0053250 Cel protein_coding protein_coding MGP_C3HHeJ_T0053251.1 MGP_C3HHeJ_G0025260.1 mouse_genomes_project 2 26384961 26387848 - Cel protein_coding processed_transcript MGP_C3HHeJ_T0055487.1 MGP_C3HHeJ_G0025735.1 mouse_genomes_project 2 87495923 87496877 + MGP_C3HHeJ_P0055487 Olfr1124 protein_coding protein_coding MGP_C3HHeJ_T0055478.1 MGP_C3HHeJ_G0025726.1 mouse_genomes_project 2 87152839 87153778 - MGP_C3HHeJ_P0055478 Olfr1111 protein_coding protein_coding MGP_C3HHeJ_T0101175.1 MGP_C3HHeJ_G0039324.1 mouse_genomes_project 2 106334370 106334760 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0057935.1 MGP_C3HHeJ_G0026370.1 mouse_genomes_project 2 155207775 155213312 + MGP_C3HHeJ_P0057935 Tcf15 protein_coding protein_coding MGP_C3HHeJ_T0099230.1 MGP_C3HHeJ_G0037424.1 mouse_genomes_project 2 170644197 170644300 + Gm24477 snRNA snRNA MGP_C3HHeJ_T0017702.1 MGP_C3HHeJ_G0015259.1 mouse_genomes_project 2 179184205 179186778 - Gm14617 processed_transcript retained_intron MGP_C3HHeJ_T0017703.1 MGP_C3HHeJ_G0015259.1 mouse_genomes_project 2 179184332 179189318 - Gm14617 processed_transcript lincRNA MGP_C3HHeJ_T0017704.1 MGP_C3HHeJ_G0015259.1 mouse_genomes_project 2 179186200 179189195 - Gm14617 processed_transcript lincRNA MGP_C3HHeJ_T0013694.1 MGP_C3HHeJ_G0011798.1 mouse_genomes_project 2 160238573 160239117 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053765.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441912 - MGP_C3HHeJ_P0053765 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053766.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441873 - MGP_C3HHeJ_P0053766 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053767.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441894 - MGP_C3HHeJ_P0053767 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053768.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441900 - MGP_C3HHeJ_P0053768 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053769.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441948 - MGP_C3HHeJ_P0053769 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053770.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394636 30441893 - MGP_C3HHeJ_P0053770 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053771.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394643 30441844 - MGP_C3HHeJ_P0053771 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053772.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30394662 30407808 - MGP_C3HHeJ_P0053772 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053773.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395006 30441880 - MGP_C3HHeJ_P0053773 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053774.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395089 30396801 - Dnm1 protein_coding retained_intron MGP_C3HHeJ_T0053775.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395640 30399089 - MGP_C3HHeJ_P0053775 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053776.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30395644 30441912 - MGP_C3HHeJ_P0053776 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053777.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30396015 30399059 - MGP_C3HHeJ_P0053777 Dnm1 protein_coding protein_coding MGP_C3HHeJ_T0053778.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30396428 30399055 - MGP_C3HHeJ_P0053778 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053779.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30398392 30404563 - Dnm1 protein_coding processed_transcript MGP_C3HHeJ_T0053780.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30398407 30399243 - Dnm1 protein_coding retained_intron MGP_C3HHeJ_T0053781.1 MGP_C3HHeJ_G0025336.1 mouse_genomes_project 2 30427063 30441861 - MGP_C3HHeJ_P0053781 Dnm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010307.1 MGP_C3HHeJ_G0008440.1 mouse_genomes_project 2 27751189 27751254 + Mir219b miRNA miRNA MGP_C3HHeJ_T0055542.1 MGP_C3HHeJ_G0025779.1 mouse_genomes_project 2 88575066 88575978 + MGP_C3HHeJ_P0055542 Olfr1183 protein_coding protein_coding MGP_C3HHeJ_T0055594.1 MGP_C3HHeJ_G0025824.1 mouse_genomes_project 2 89643045 89643990 - MGP_C3HHeJ_P0055594 Olfr1241 protein_coding protein_coding MGP_C3HHeJ_T0017655.1 MGP_C3HHeJ_G0015236.1 mouse_genomes_project 2 134072264 134101218 - 5330413P13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017656.1 MGP_C3HHeJ_G0015236.1 mouse_genomes_project 2 134097184 134101223 - 5330413P13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017657.1 MGP_C3HHeJ_G0015236.1 mouse_genomes_project 2 134097401 134101186 - 5330413P13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010296.1 MGP_C3HHeJ_G0008429.1 mouse_genomes_project 2 22699823 22699890 - Gm24328 miRNA miRNA MGP_C3HHeJ_T0053012.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099703 24118639 - MGP_C3HHeJ_P0053012 Snapc4 protein_coding protein_coding MGP_C3HHeJ_T0053013.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099705 24101963 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053014.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099712 24118643 - MGP_C3HHeJ_P0053014 Snapc4 protein_coding protein_coding MGP_C3HHeJ_T0053015.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24099714 24118622 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053016.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24103552 24104709 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053017.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106395 24110570 - MGP_C3HHeJ_P0053017 Snapc4 protein_coding protein_coding MGP_C3HHeJ_T0053018.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106424 24110550 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053019.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106445 24108081 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053020.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24106922 24111067 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053021.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24107771 24110294 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053022.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24107771 24118625 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053023.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24110500 24111677 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053024.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24114576 24118643 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053025.1 MGP_C3HHeJ_G0025219.1 mouse_genomes_project 2 24115281 24118616 - Snapc4 protein_coding processed_transcript MGP_C3HHeJ_T0053337.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27660266 27687185 - MGP_C3HHeJ_P0053337 Trub2 protein_coding protein_coding MGP_C3HHeJ_T0053341.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27674362 27687197 - MGP_C3HHeJ_P0053341 Trub2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053342.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27675778 27688039 - MGP_C3HHeJ_P0053342 Trub2 protein_coding protein_coding MGP_C3HHeJ_T0053343.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27677200 27687171 - MGP_C3HHeJ_P0053343 Trub2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053344.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27677269 27687159 - MGP_C3HHeJ_P0053344 Trub2 protein_coding protein_coding MGP_C3HHeJ_T0053345.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27678106 27687208 - MGP_C3HHeJ_P0053345 Trub2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053346.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27678265 27681881 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0053347.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27678719 27681735 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0053348.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27682757 27687167 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0053349.1 MGP_C3HHeJ_G0025276.1 mouse_genomes_project 2 27684458 27687170 - Trub2 protein_coding retained_intron MGP_C3HHeJ_T0004053.1 MGP_C3HHeJ_G0003582.1 mouse_genomes_project 2 154911312 154912958 - Rspo4os antisense antisense MGP_C3HHeJ_T0101169.1 MGP_C3HHeJ_G0039320.1 mouse_genomes_project 2 37518536 37523286 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101170.1 MGP_C3HHeJ_G0039320.1 mouse_genomes_project 2 37522267 37523040 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0003993.1 MGP_C3HHeJ_G0003538.1 mouse_genomes_project 2 119784482 119787727 + 1700054M17Rik antisense antisense MGP_C3HHeJ_T0101869.1 MGP_C3HHeJ_G0039834.1 mouse_genomes_project 2 9178258 9188375 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007061.1 MGP_C3HHeJ_G0005789.1 mouse_genomes_project 2 14603666 14607411 - Gm13322 lincRNA lincRNA MGP_C3HHeJ_T0056297.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111554597 111605477 + MGP_C3HHeJ_P0056297 Slc5a12 protein_coding protein_coding MGP_C3HHeJ_T0056298.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111554606 111605484 + MGP_C3HHeJ_P0056298 Slc5a12 protein_coding protein_coding MGP_C3HHeJ_T0056299.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111554727 111583299 + Slc5a12 protein_coding retained_intron MGP_C3HHeJ_T0056300.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111555032 111563697 + Slc5a12 protein_coding processed_transcript MGP_C3HHeJ_T0056301.1 MGP_C3HHeJ_G0025966.1 mouse_genomes_project 2 111563631 111604293 + Slc5a12 protein_coding processed_transcript MGP_C3HHeJ_T0052771.1 MGP_C3HHeJ_G0025171.1 mouse_genomes_project 2 22940377 22941643 + MGP_C3HHeJ_P0052771 Lrrc26 protein_coding protein_coding MGP_C3HHeJ_T0013345.1 MGP_C3HHeJ_G0011449.1 mouse_genomes_project 2 33183490 33183657 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099228.1 MGP_C3HHeJ_G0037422.1 mouse_genomes_project 2 167205750 167205853 + Gm25881 snRNA snRNA MGP_C3HHeJ_T0056253.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107832678 107844455 - MGP_C3HHeJ_P0056253 Arl14ep protein_coding protein_coding MGP_C3HHeJ_T0056254.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107834587 107840568 - MGP_C3HHeJ_P0056254 Arl14ep protein_coding protein_coding MGP_C3HHeJ_T0056255.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107835348 107839454 - Arl14ep protein_coding retained_intron MGP_C3HHeJ_T0056256.1 MGP_C3HHeJ_G0025955.1 mouse_genomes_project 2 107837541 107844428 - Arl14ep protein_coding retained_intron MGP_C3HHeJ_T0007324.1 MGP_C3HHeJ_G0006001.1 mouse_genomes_project 2 173022181 173022820 + 1700017J07Rik lincRNA lincRNA MGP_C3HHeJ_T0013459.1 MGP_C3HHeJ_G0011563.1 mouse_genomes_project 2 73331970 73332234 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057916.1 MGP_C3HHeJ_G0026362.1 mouse_genomes_project 2 154740922 154746221 + MGP_C3HHeJ_P0057916 Tmem74b protein_coding protein_coding MGP_C3HHeJ_T0057917.1 MGP_C3HHeJ_G0026362.1 mouse_genomes_project 2 154741225 154751036 + MGP_C3HHeJ_P0057917 Tmem74b protein_coding protein_coding MGP_C3HHeJ_T0007251.1 MGP_C3HHeJ_G0005939.1 mouse_genomes_project 2 135740666 135766446 + A430048G15Rik lincRNA lincRNA MGP_C3HHeJ_T0013446.1 MGP_C3HHeJ_G0011550.1 mouse_genomes_project 2 69149893 69151080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101913.1 MGP_C3HHeJ_G0039878.1 mouse_genomes_project 2 88431444 88432588 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055434.1 MGP_C3HHeJ_G0025684.1 mouse_genomes_project 2 86000350 86002577 - MGP_C3HHeJ_P0055434 Olfr1042 protein_coding protein_coding MGP_C3HHeJ_T0056319.1 MGP_C3HHeJ_G0025979.1 mouse_genomes_project 2 112429223 112429893 - MGP_C3HHeJ_P0056319 protein_coding protein_coding MGP_C3HHeJ_T0013601.1 MGP_C3HHeJ_G0011705.1 mouse_genomes_project 2 129773014 129774858 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059015.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170793106 170832725 + Cse1l protein_coding processed_transcript MGP_C3HHeJ_T0059016.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170793125 170834564 + MGP_C3HHeJ_P0059016 Cse1l protein_coding protein_coding MGP_C3HHeJ_T0059017.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170793177 170834276 + MGP_C3HHeJ_P0059017 Cse1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059018.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170802793 170833968 + MGP_C3HHeJ_P0059018 Cse1l protein_coding protein_coding MGP_C3HHeJ_T0059019.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815037 170833983 + MGP_C3HHeJ_P0059019 Cse1l protein_coding protein_coding MGP_C3HHeJ_T0059020.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815072 170820572 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059021.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815231 170823256 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059022.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170815275 170825590 + Cse1l protein_coding processed_transcript MGP_C3HHeJ_T0059023.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170822923 170833028 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059024.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170822950 170829629 + MGP_C3HHeJ_P0059024 Cse1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059025.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170825261 170829425 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0059026.1 MGP_C3HHeJ_G0026622.1 mouse_genomes_project 2 170829007 170829994 + Cse1l protein_coding retained_intron MGP_C3HHeJ_T0056086.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103796698 103820133 + MGP_C3HHeJ_P0056086 Apip protein_coding protein_coding MGP_C3HHeJ_T0056087.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103796718 103820120 + Apip protein_coding processed_transcript MGP_C3HHeJ_T0056088.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103805966 103819279 + Apip protein_coding processed_transcript MGP_C3HHeJ_T0056089.1 MGP_C3HHeJ_G0025922.1 mouse_genomes_project 2 103819324 103820127 + Apip protein_coding processed_transcript MGP_C3HHeJ_T0059297.1 MGP_C3HHeJ_G0026693.1 mouse_genomes_project 2 182913419 182916686 - MGP_C3HHeJ_P0059297 Ppp1r3d protein_coding protein_coding MGP_C3HHeJ_T0054720.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64447057 64496462 - MGP_C3HHeJ_P0054720 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054721.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64447112 64496918 - MGP_C3HHeJ_P0054721 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054722.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64455127 64497033 - MGP_C3HHeJ_P0054722 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054723.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64482474 64497033 - Slc38a11 protein_coding processed_transcript MGP_C3HHeJ_T0054724.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64483038 64496999 - MGP_C3HHeJ_P0054724 Slc38a11 protein_coding protein_coding MGP_C3HHeJ_T0054725.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64485887 64496922 - Slc38a11 protein_coding processed_transcript MGP_C3HHeJ_T0054726.1 MGP_C3HHeJ_G0025510.1 mouse_genomes_project 2 64487796 64497029 - Slc38a11 protein_coding processed_transcript MGP_C3HHeJ_T0003885.1 MGP_C3HHeJ_G0003467.1 mouse_genomes_project 2 31970219 31977993 + Nron antisense antisense MGP_C3HHeJ_T0003886.1 MGP_C3HHeJ_G0003467.1 mouse_genomes_project 2 31970231 31976857 + Nron antisense antisense MGP_C3HHeJ_T0003887.1 MGP_C3HHeJ_G0003467.1 mouse_genomes_project 2 31970262 31975840 + Nron antisense antisense MGP_C3HHeJ_T0057555.1 MGP_C3HHeJ_G0026271.1 mouse_genomes_project 2 136835949 136892469 - MGP_C3HHeJ_P0057555 Hao1 protein_coding protein_coding MGP_C3HHeJ_T0057556.1 MGP_C3HHeJ_G0026271.1 mouse_genomes_project 2 136867418 136892408 - Hao1 protein_coding processed_transcript MGP_C3HHeJ_T0003830.1 MGP_C3HHeJ_G0003424.1 mouse_genomes_project 2 12090854 12118058 - Gm10848 antisense antisense MGP_C3HHeJ_T0054171.1 MGP_C3HHeJ_G0025400.1 mouse_genomes_project 2 34725679 34726618 + MGP_C3HHeJ_P0054171 Olfr340 protein_coding protein_coding MGP_C3HHeJ_T0017662.1 MGP_C3HHeJ_G0015240.1 mouse_genomes_project 2 153634068 153635510 + E130215H24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0058306.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159288303 159325294 - MGP_C3HHeJ_P0058306 6430550D23Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058311.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159317820 159321835 - MGP_C3HHeJ_P0058311 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058312.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159317987 159325310 - 6430550D23Rik protein_coding retained_intron MGP_C3HHeJ_T0058313.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159318646 159321294 - MGP_C3HHeJ_P0058313 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058314.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320550 159325306 - MGP_C3HHeJ_P0058314 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058315.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320643 159325364 - MGP_C3HHeJ_P0058315 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058316.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320730 159321835 - MGP_C3HHeJ_P0058316 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058317.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320773 159321544 - MGP_C3HHeJ_P0058317 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0058318.1 MGP_C3HHeJ_G0026469.1 mouse_genomes_project 2 159320805 159321544 - MGP_C3HHeJ_P0058318 6430550D23Rik protein_coding protein_coding MGP_C3HHeJ_T0057592.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905043 138918649 + protein_coding processed_transcript MGP_C3HHeJ_T0057593.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905088 138909881 + protein_coding processed_transcript MGP_C3HHeJ_T0057594.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905124 138955646 + MGP_C3HHeJ_P0057594 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057595.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138905314 138917348 + protein_coding processed_transcript MGP_C3HHeJ_T0057596.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138918652 138954344 + MGP_C3HHeJ_P0057596 protein_coding protein_coding MGP_C3HHeJ_T0057597.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138934690 138960335 + MGP_C3HHeJ_P0057597 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057598.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138957238 138958034 + protein_coding processed_transcript MGP_C3HHeJ_T0057599.1 MGP_C3HHeJ_G0026277.1 mouse_genomes_project 2 138957253 138960395 + protein_coding processed_transcript MGP_C3HHeJ_T0100486.1 MGP_C3HHeJ_G0038680.1 mouse_genomes_project 2 132450977 132451063 + Gm23187 snoRNA snoRNA MGP_C3HHeJ_T0007181.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93920055 93937104 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0007182.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93920056 93923956 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0007183.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93920057 93933632 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0007184.1 MGP_C3HHeJ_G0005886.1 mouse_genomes_project 2 93935671 93935908 + Gm10804 lincRNA lincRNA MGP_C3HHeJ_T0059309.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184444375 184512719 - MGP_C3HHeJ_P0059309 Taf4 protein_coding protein_coding MGP_C3HHeJ_T0059310.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184445662 184473126 - MGP_C3HHeJ_P0059310 Taf4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059311.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184454414 184455395 - Taf4 protein_coding processed_transcript MGP_C3HHeJ_T0059312.1 MGP_C3HHeJ_G0026697.1 mouse_genomes_project 2 184455190 184462527 - Taf4 protein_coding processed_transcript MGP_C3HHeJ_T0017663.1 MGP_C3HHeJ_G0015241.1 mouse_genomes_project 2 155407428 155440104 + Gm14164 processed_transcript processed_transcript MGP_C3HHeJ_T0017664.1 MGP_C3HHeJ_G0015241.1 mouse_genomes_project 2 155439527 155439929 + Gm14164 processed_transcript processed_transcript MGP_C3HHeJ_T0003986.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115325630 115332650 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003987.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115325691 115332627 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003988.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115326541 115332130 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003989.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115327570 115332435 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0003990.1 MGP_C3HHeJ_G0003535.1 mouse_genomes_project 2 115327595 115337019 + C130080G10Rik antisense antisense MGP_C3HHeJ_T0099190.1 MGP_C3HHeJ_G0037384.1 mouse_genomes_project 2 42927612 42927721 + Gm22867 snRNA snRNA MGP_C3HHeJ_T0052940.1 MGP_C3HHeJ_G0025203.1 mouse_genomes_project 2 23453233 23455764 + MGP_C3HHeJ_P0052940 Lcn3 protein_coding protein_coding MGP_C3HHeJ_T0003870.1 MGP_C3HHeJ_G0003453.1 mouse_genomes_project 2 28364708 28366331 + Gm16323 antisense antisense MGP_C3HHeJ_T0007048.1 MGP_C3HHeJ_G0005778.1 mouse_genomes_project 2 4602757 4604124 + Gm28641 lincRNA lincRNA MGP_C3HHeJ_T0055562.1 MGP_C3HHeJ_G0025798.1 mouse_genomes_project 2 89076715 89077651 - MGP_C3HHeJ_P0055562 Olfr1211 protein_coding protein_coding MGP_C3HHeJ_T0058828.1 MGP_C3HHeJ_G0026584.1 mouse_genomes_project 2 168432072 168434738 + MGP_C3HHeJ_P0058828 Wfdc13 protein_coding protein_coding MGP_C3HHeJ_T0056309.1 MGP_C3HHeJ_G0025970.1 mouse_genomes_project 2 112081498 112100064 - MGP_C3HHeJ_P0056309 Gm15130 protein_coding protein_coding MGP_C3HHeJ_T0057866.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153864349 153888410 + Gins1 protein_coding processed_transcript MGP_C3HHeJ_T0057867.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153869465 153893793 + MGP_C3HHeJ_P0057867 Gins1 protein_coding protein_coding MGP_C3HHeJ_T0057868.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153869488 153888604 + Gins1 protein_coding processed_transcript MGP_C3HHeJ_T0057869.1 MGP_C3HHeJ_G0026353.1 mouse_genomes_project 2 153875153 153890052 + Gins1 protein_coding processed_transcript MGP_C3HHeJ_T0053456.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114595 28119572 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053457.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114595 28119585 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053458.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114610 28118648 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053459.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114613 28119127 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053460.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114613 28119593 - MGP_C3HHeJ_P0053460 D2Wsu81e protein_coding protein_coding MGP_C3HHeJ_T0053461.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28114615 28119602 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0053462.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28116073 28119108 - D2Wsu81e protein_coding processed_transcript MGP_C3HHeJ_T0053463.1 MGP_C3HHeJ_G0025292.1 mouse_genomes_project 2 28117505 28119598 - D2Wsu81e protein_coding retained_intron MGP_C3HHeJ_T0007281.1 MGP_C3HHeJ_G0005964.1 mouse_genomes_project 2 158361744 158364034 - 2310005A03Rik lincRNA lincRNA MGP_C3HHeJ_T0013595.1 MGP_C3HHeJ_G0011699.1 mouse_genomes_project 2 123396141 123396820 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011422.1 MGP_C3HHeJ_G0009555.1 mouse_genomes_project 2 150115114 150115572 + Nkx2-2os misc_RNA misc_RNA MGP_C3HHeJ_T0011420.1 MGP_C3HHeJ_G0009553.1 mouse_genomes_project 2 148232181 148232506 - Gm22390 misc_RNA misc_RNA MGP_C3HHeJ_T0056917.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562404 123633521 + MGP_C3HHeJ_P0056917 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056918.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562404 123633521 + MGP_C3HHeJ_P0056918 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056919.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562563 123597192 + Casc4 protein_coding retained_intron MGP_C3HHeJ_T0056920.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562564 123603207 + Casc4 protein_coding retained_intron MGP_C3HHeJ_T0056921.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562564 123633406 + MGP_C3HHeJ_P0056921 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056922.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123562564 123633368 + MGP_C3HHeJ_P0056922 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0056923.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123563139 123631152 + Casc4 protein_coding processed_transcript MGP_C3HHeJ_T0056924.1 MGP_C3HHeJ_G0026119.1 mouse_genomes_project 2 123595789 123631117 + MGP_C3HHeJ_P0056924 Casc4 protein_coding protein_coding MGP_C3HHeJ_T0013702.1 MGP_C3HHeJ_G0011806.1 mouse_genomes_project 2 164413679 164414537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011432.1 MGP_C3HHeJ_G0009565.1 mouse_genomes_project 2 185426282 185426400 + Gm22842 misc_RNA misc_RNA MGP_C3HHeJ_T0053007.1 MGP_C3HHeJ_G0025217.1 mouse_genomes_project 2 24085062 24089042 - Dnlz protein_coding processed_transcript MGP_C3HHeJ_T0053008.1 MGP_C3HHeJ_G0025217.1 mouse_genomes_project 2 24085062 24089052 - MGP_C3HHeJ_P0053008 Dnlz protein_coding protein_coding MGP_C3HHeJ_T0059389.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185235312 185279638 - MGP_C3HHeJ_P0059389 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059390.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185245621 185287287 - MGP_C3HHeJ_P0059390 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059391.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185245623 185253250 - MGP_C3HHeJ_P0059391 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059392.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185246546 185279638 - MGP_C3HHeJ_P0059392 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059393.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185258349 185287287 - MGP_C3HHeJ_P0059393 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059394.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185258364 185279638 - MGP_C3HHeJ_P0059394 Dido1 protein_coding protein_coding MGP_C3HHeJ_T0059395.1 MGP_C3HHeJ_G0026716.1 mouse_genomes_project 2 185262317 185279280 - Dido1 protein_coding processed_transcript MGP_C3HHeJ_T0004029.1 MGP_C3HHeJ_G0003564.1 mouse_genomes_project 2 137534282 137580299 - 4930545L23Rik antisense antisense MGP_C3HHeJ_T0057166.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129541460 129609263 - MGP_C3HHeJ_P0057166 Kcnip3 protein_coding protein_coding MGP_C3HHeJ_T0057167.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129541460 129609263 - MGP_C3HHeJ_P0057167 Kcnip3 protein_coding protein_coding MGP_C3HHeJ_T0057168.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129543088 129568805 - MGP_C3HHeJ_P0057168 Kcnip3 protein_coding protein_coding MGP_C3HHeJ_T0057169.1 MGP_C3HHeJ_G0026180.1 mouse_genomes_project 2 129543170 129609987 - Kcnip3 protein_coding processed_transcript MGP_C3HHeJ_T0013696.1 MGP_C3HHeJ_G0011800.1 mouse_genomes_project 2 160551362 160551722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053026.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128065 - MGP_C3HHeJ_P0053026 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053027.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128040 - MGP_C3HHeJ_P0053027 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053028.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128046 - MGP_C3HHeJ_P0053028 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053029.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121550 24128053 - MGP_C3HHeJ_P0053029 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053030.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24121551 24126330 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053031.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24122303 24123962 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053032.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24122312 24124358 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053033.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125403 24128032 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053034.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125403 24128055 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053035.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125761 24128044 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053036.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125853 24127443 - MGP_C3HHeJ_P0053036 Sdccag3 protein_coding protein_coding MGP_C3HHeJ_T0053037.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24125874 24128016 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0053038.1 MGP_C3HHeJ_G0025220.1 mouse_genomes_project 2 24126304 24127914 - Sdccag3 protein_coding processed_transcript MGP_C3HHeJ_T0055086.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74234482 74274814 + MGP_C3HHeJ_P0055086 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055091.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74255463 74270758 + MGP_C3HHeJ_P0055091 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055092.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74258978 74274458 + MGP_C3HHeJ_P0055092 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055093.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74262082 74274443 + MGP_C3HHeJ_P0055093 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055094.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74272216 74273139 + MGP_C3HHeJ_P0055094 Hoxd3 protein_coding protein_coding MGP_C3HHeJ_T0055095.1 MGP_C3HHeJ_G0025583.1 mouse_genomes_project 2 74272264 74274985 + Hoxd3 protein_coding retained_intron MGP_C3HHeJ_T0057490.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134294834 134391396 - MGP_C3HHeJ_P0057490 Slc23a2 protein_coding protein_coding MGP_C3HHeJ_T0057491.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134297752 134299024 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057492.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134303046 134309373 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057493.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134317241 134391396 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057494.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134318013 134320293 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057495.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134331392 134338008 - Slc23a2 protein_coding processed_transcript MGP_C3HHeJ_T0057496.1 MGP_C3HHeJ_G0026257.1 mouse_genomes_project 2 134337602 134354840 - MGP_C3HHeJ_P0057496 Slc23a2 protein_coding protein_coding MGP_C3HHeJ_T0013596.1 MGP_C3HHeJ_G0011700.1 mouse_genomes_project 2 123928479 123928830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099227.1 MGP_C3HHeJ_G0037421.1 mouse_genomes_project 2 166453670 166453828 - Gm24478 snRNA snRNA MGP_C3HHeJ_T0056337.1 MGP_C3HHeJ_G0025997.1 mouse_genomes_project 2 113234801 113235740 - MGP_C3HHeJ_P0056337 protein_coding protein_coding MGP_C3HHeJ_T0010343.1 MGP_C3HHeJ_G0008476.1 mouse_genomes_project 2 91767450 91767533 - Gm22071 miRNA miRNA MGP_C3HHeJ_T0003984.1 MGP_C3HHeJ_G0003533.1 mouse_genomes_project 2 114764538 114767866 - Gm13964 antisense antisense MGP_C3HHeJ_T0099231.1 MGP_C3HHeJ_G0037425.1 mouse_genomes_project 2 185275353 185275460 + Gm22502 snRNA snRNA MGP_C3HHeJ_T0099213.1 MGP_C3HHeJ_G0037407.1 mouse_genomes_project 2 128658153 128658302 - Gm23753 snRNA snRNA MGP_C3HHeJ_T0052931.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23365083 23369906 + MGP_C3HHeJ_P0052931 Lcn6 protein_coding protein_coding MGP_C3HHeJ_T0052932.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23367563 23369903 + MGP_C3HHeJ_P0052932 Lcn6 protein_coding protein_coding MGP_C3HHeJ_T0052933.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23368258 23369899 + MGP_C3HHeJ_P0052933 Lcn6 protein_coding protein_coding MGP_C3HHeJ_T0052934.1 MGP_C3HHeJ_G0025198.1 mouse_genomes_project 2 23368410 23369899 + Lcn6 protein_coding processed_transcript MGP_C3HHeJ_T0017570.1 MGP_C3HHeJ_G0015194.1 mouse_genomes_project 2 75348287 75354260 + Gm13657 processed_transcript processed_transcript MGP_C3HHeJ_T0055540.1 MGP_C3HHeJ_G0025777.1 mouse_genomes_project 2 88517982 88518912 - MGP_C3HHeJ_P0055540 Olfr1180 protein_coding protein_coding MGP_C3HHeJ_T0054487.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51950758 52007843 - MGP_C3HHeJ_P0054487 Prpf40a protein_coding protein_coding MGP_C3HHeJ_T0054488.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51955280 51961426 - Prpf40a protein_coding processed_transcript MGP_C3HHeJ_T0054489.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51969208 52007902 - MGP_C3HHeJ_P0054489 Prpf40a protein_coding protein_coding MGP_C3HHeJ_T0054490.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51988296 52007822 - Prpf40a protein_coding processed_transcript MGP_C3HHeJ_T0054491.1 MGP_C3HHeJ_G0025470.1 mouse_genomes_project 2 51992069 52007843 - Prpf40a protein_coding processed_transcript MGP_C3HHeJ_T0052410.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15490287 15494184 - Skida1 protein_coding processed_transcript MGP_C3HHeJ_T0052411.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15493694 15498663 - MGP_C3HHeJ_P0052411 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0052412.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15494864 15498061 - MGP_C3HHeJ_P0052412 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0052413.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15497327 15498396 - MGP_C3HHeJ_P0052413 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0052414.1 MGP_C3HHeJ_G0025105.1 mouse_genomes_project 2 15497755 15498643 - MGP_C3HHeJ_P0052414 Skida1 protein_coding protein_coding MGP_C3HHeJ_T0017559.1 MGP_C3HHeJ_G0015185.1 mouse_genomes_project 2 58295453 58299634 - 5330411J11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017560.1 MGP_C3HHeJ_G0015185.1 mouse_genomes_project 2 58296744 58301053 - 5330411J11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0056189.1 MGP_C3HHeJ_G0025942.1 mouse_genomes_project 2 105497090 105518258 - MGP_C3HHeJ_P0056189 Depdc7 protein_coding protein_coding MGP_C3HHeJ_T0056190.1 MGP_C3HHeJ_G0025942.1 mouse_genomes_project 2 105497915 105498510 - Depdc7 protein_coding retained_intron MGP_C3HHeJ_T0056973.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124473652 124477404 + MGP_C3HHeJ_P0056973 AA467197 protein_coding protein_coding MGP_C3HHeJ_T0056974.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124474517 124477868 + MGP_C3HHeJ_P0056974 AA467197 protein_coding protein_coding MGP_C3HHeJ_T0056975.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124474582 124477618 + AA467197 protein_coding processed_transcript MGP_C3HHeJ_T0056976.1 MGP_C3HHeJ_G0026136.1 mouse_genomes_project 2 124474582 124477760 + MGP_C3HHeJ_P0056976 AA467197 protein_coding protein_coding MGP_C3HHeJ_T0059275.1 MGP_C3HHeJ_G0026687.1 mouse_genomes_project 2 178795718 178798752 - MGP_C3HHeJ_P0059275 Atp5e protein_coding protein_coding MGP_C3HHeJ_T0059276.1 MGP_C3HHeJ_G0026687.1 mouse_genomes_project 2 178795721 178798696 - Atp5e protein_coding retained_intron MGP_C3HHeJ_T0059277.1 MGP_C3HHeJ_G0026687.1 mouse_genomes_project 2 178797162 178798736 - Atp5e protein_coding retained_intron MGP_C3HHeJ_T0055241.1 MGP_C3HHeJ_G0025614.1 mouse_genomes_project 2 80017464 80020349 + MGP_C3HHeJ_P0055241 Prdx6b protein_coding protein_coding MGP_C3HHeJ_T0055519.1 MGP_C3HHeJ_G0025757.1 mouse_genomes_project 2 87934458 87935760 + MGP_C3HHeJ_P0055519 Olfr1148 protein_coding protein_coding MGP_C3HHeJ_T0017588.1 MGP_C3HHeJ_G0015206.1 mouse_genomes_project 2 92837717 92861117 + D930015M05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011400.1 MGP_C3HHeJ_G0009533.1 mouse_genomes_project 2 43628880 43629011 + Gm27761 misc_RNA misc_RNA MGP_C3HHeJ_T0057985.1 MGP_C3HHeJ_G0026393.1 mouse_genomes_project 2 155768378 155769314 + MGP_C3HHeJ_P0057985 Mcts2 protein_coding protein_coding MGP_C3HHeJ_T0052944.1 MGP_C3HHeJ_G0025206.1 mouse_genomes_project 2 23509435 23511820 + MGP_C3HHeJ_P0052944 Lcn9 protein_coding protein_coding MGP_C3HHeJ_T0056039.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102384176 102479290 - MGP_C3HHeJ_P0056039 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056040.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102384176 102523174 - MGP_C3HHeJ_P0056040 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056041.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102386131 102479291 - MGP_C3HHeJ_P0056041 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056042.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102387139 102479233 - MGP_C3HHeJ_P0056042 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056043.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102414836 102523174 - MGP_C3HHeJ_P0056043 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056044.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102434127 102568634 - MGP_C3HHeJ_P0056044 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056045.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102447732 102479637 - MGP_C3HHeJ_P0056045 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056046.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102447776 102496634 - MGP_C3HHeJ_P0056046 Prr5l protein_coding protein_coding MGP_C3HHeJ_T0056047.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102447887 102479316 - Prr5l protein_coding processed_transcript MGP_C3HHeJ_T0056048.1 MGP_C3HHeJ_G0025913.1 mouse_genomes_project 2 102515640 102568647 - Prr5l protein_coding processed_transcript MGP_C3HHeJ_T0058598.1 MGP_C3HHeJ_G0026513.1 mouse_genomes_project 2 162003542 162042545 + MGP_C3HHeJ_P0058598 Arhgap40 protein_coding protein_coding MGP_C3HHeJ_T0058599.1 MGP_C3HHeJ_G0026513.1 mouse_genomes_project 2 162003542 162042690 + MGP_C3HHeJ_P0058599 Arhgap40 protein_coding protein_coding MGP_C3HHeJ_T0058600.1 MGP_C3HHeJ_G0026513.1 mouse_genomes_project 2 162033537 162042690 + Arhgap40 protein_coding retained_intron MGP_C3HHeJ_T0058832.1 MGP_C3HHeJ_G0026587.1 mouse_genomes_project 2 168483886 168499368 - MGP_C3HHeJ_P0058832 Wfdc3 protein_coding protein_coding MGP_C3HHeJ_T0058833.1 MGP_C3HHeJ_G0026587.1 mouse_genomes_project 2 168483886 168496750 - MGP_C3HHeJ_P0058833 Wfdc3 protein_coding protein_coding MGP_C3HHeJ_T0058834.1 MGP_C3HHeJ_G0026587.1 mouse_genomes_project 2 168497001 168499368 - Wfdc3 protein_coding processed_transcript MGP_C3HHeJ_T0013400.1 MGP_C3HHeJ_G0011504.1 mouse_genomes_project 2 52209951 52210930 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058489.1 MGP_C3HHeJ_G0026492.1 mouse_genomes_project 2 160462051 160471584 + MGP_C3HHeJ_P0058489 Tldc2 protein_coding protein_coding MGP_C3HHeJ_T0058490.1 MGP_C3HHeJ_G0026492.1 mouse_genomes_project 2 160463504 160471602 + MGP_C3HHeJ_P0058490 Tldc2 protein_coding protein_coding MGP_C3HHeJ_T0007218.1 MGP_C3HHeJ_G0005914.1 mouse_genomes_project 2 117425386 117426608 - 2700033N17Rik lincRNA lincRNA MGP_C3HHeJ_T0059300.1 MGP_C3HHeJ_G0026695.1 mouse_genomes_project 2 182935191 182992057 + MGP_C3HHeJ_P0059300 Cdh26 protein_coding protein_coding MGP_C3HHeJ_T0059301.1 MGP_C3HHeJ_G0026695.1 mouse_genomes_project 2 182935267 182992059 + MGP_C3HHeJ_P0059301 Cdh26 protein_coding protein_coding MGP_C3HHeJ_T0059302.1 MGP_C3HHeJ_G0026695.1 mouse_genomes_project 2 182964735 182971265 + Cdh26 protein_coding retained_intron MGP_C3HHeJ_T0052991.1 MGP_C3HHeJ_G0025215.1 mouse_genomes_project 2 23988470 23994268 - MGP_C3HHeJ_P0052991 C030048H21Rik protein_coding protein_coding MGP_C3HHeJ_T0004061.1 MGP_C3HHeJ_G0003590.1 mouse_genomes_project 2 158830977 158840885 - Acss2os antisense antisense MGP_C3HHeJ_T0007326.1 MGP_C3HHeJ_G0006003.1 mouse_genomes_project 2 173072352 173073713 + Gm9873 lincRNA lincRNA MGP_C3HHeJ_T0007327.1 MGP_C3HHeJ_G0006003.1 mouse_genomes_project 2 173072597 173073694 + Gm9873 lincRNA lincRNA MGP_C3HHeJ_T0057841.1 MGP_C3HHeJ_G0026347.1 mouse_genomes_project 2 153549771 153575148 - MGP_C3HHeJ_P0057841 Apmap protein_coding protein_coding MGP_C3HHeJ_T0057842.1 MGP_C3HHeJ_G0026347.1 mouse_genomes_project 2 153553812 153566835 - Apmap protein_coding processed_transcript MGP_C3HHeJ_T0057843.1 MGP_C3HHeJ_G0026347.1 mouse_genomes_project 2 153561203 153575125 - Apmap protein_coding processed_transcript MGP_C3HHeJ_T0056327.1 MGP_C3HHeJ_G0025987.1 mouse_genomes_project 2 112789447 112790386 - MGP_C3HHeJ_P0056327 protein_coding protein_coding MGP_C3HHeJ_T0058815.1 MGP_C3HHeJ_G0026575.1 mouse_genomes_project 2 168298742 168302232 - MGP_C3HHeJ_P0058815 Spint3 protein_coding protein_coding MGP_C3HHeJ_T0052757.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22912057 22919316 + MGP_C3HHeJ_P0052757 Tprn protein_coding protein_coding MGP_C3HHeJ_T0052758.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22913680 22918987 + Tprn protein_coding processed_transcript MGP_C3HHeJ_T0052759.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22916994 22918602 + Tprn protein_coding processed_transcript MGP_C3HHeJ_T0052760.1 MGP_C3HHeJ_G0025167.1 mouse_genomes_project 2 22918366 22918946 + Tprn protein_coding processed_transcript MGP_C3HHeJ_T0004034.1 MGP_C3HHeJ_G0003568.1 mouse_genomes_project 2 143828719 143884790 - Macrod2os1 antisense antisense MGP_C3HHeJ_T0056215.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106465682 106497601 + MGP_C3HHeJ_P0056215 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056216.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106465702 106496701 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056217.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106465717 106484125 + MGP_C3HHeJ_P0056217 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056218.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106469370 106497481 + MGP_C3HHeJ_P0056218 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056219.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106471397 106473312 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056220.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472005 106496594 + MGP_C3HHeJ_P0056220 Pax6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056221.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472544 106473423 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056222.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472627 106473259 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056223.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472627 106497481 + MGP_C3HHeJ_P0056223 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056224.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106472963 106497310 + MGP_C3HHeJ_P0056224 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056225.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106473579 106497598 + MGP_C3HHeJ_P0056225 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056226.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106475729 106486052 + MGP_C3HHeJ_P0056226 Pax6 protein_coding protein_coding MGP_C3HHeJ_T0056227.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106477205 106492498 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056228.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479051 106485239 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056229.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479802 106492509 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056230.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479847 106492541 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056231.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479874 106496592 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056232.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479876 106492007 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056233.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479886 106492519 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056234.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106479976 106491978 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056235.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106484008 106485200 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0056236.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106485578 106497601 + Pax6 protein_coding processed_transcript MGP_C3HHeJ_T0056237.1 MGP_C3HHeJ_G0025950.1 mouse_genomes_project 2 106492758 106493401 + Pax6 protein_coding retained_intron MGP_C3HHeJ_T0013263.1 MGP_C3HHeJ_G0011367.1 mouse_genomes_project 2 511639 511955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004066.1 MGP_C3HHeJ_G0003594.1 mouse_genomes_project 2 159132242 159133406 + Gm16098 antisense antisense MGP_C3HHeJ_T0004021.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748087 134769718 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004022.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748169 134769759 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004023.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748169 134771325 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004024.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748181 134781427 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004025.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748197 134781320 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0004026.1 MGP_C3HHeJ_G0003561.1 mouse_genomes_project 2 134748197 134769719 + 1700026D11Rik antisense antisense MGP_C3HHeJ_T0013734.1 MGP_C3HHeJ_G0011838.1 mouse_genomes_project 2 184531589 184531986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055565.1 MGP_C3HHeJ_G0025801.1 mouse_genomes_project 2 89116128 89123430 - MGP_C3HHeJ_P0055565 protein_coding protein_coding MGP_C3HHeJ_T0055566.1 MGP_C3HHeJ_G0025801.1 mouse_genomes_project 2 89116627 89123400 - protein_coding processed_transcript MGP_C3HHeJ_T0055567.1 MGP_C3HHeJ_G0025801.1 mouse_genomes_project 2 89116844 89123424 - protein_coding processed_transcript MGP_C3HHeJ_T0098390.1 MGP_C3HHeJ_G0036596.1 mouse_genomes_project 2 1124556 1128200 + Gm37814 sense_intronic sense_intronic MGP_C3HHeJ_T0054748.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65268310 65311539 - MGP_C3HHeJ_P0054748 Galnt3 protein_coding protein_coding MGP_C3HHeJ_T0054749.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65269630 65280648 - Galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0054750.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65276586 65279503 - Galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0054751.1 MGP_C3HHeJ_G0025514.1 mouse_genomes_project 2 65283050 65289840 - Galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0054699.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64022704 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0054700.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64025000 - MGP_C3HHeJ_P0054700 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054701.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64136073 - MGP_C3HHeJ_P0054701 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054702.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64018684 64024925 - MGP_C3HHeJ_P0054702 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054703.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64036174 64041901 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0054704.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64037640 64084049 - MGP_C3HHeJ_P0054704 Grb14 protein_coding protein_coding MGP_C3HHeJ_T0054705.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64043750 64084026 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0054706.1 MGP_C3HHeJ_G0025508.1 mouse_genomes_project 2 64135958 64141940 - Grb14 protein_coding processed_transcript MGP_C3HHeJ_T0001020.1 MGP_C3HHeJ_G0000957.1 mouse_genomes_project 2 12336936 12338873 + TEC TEC MGP_C3HHeJ_T0055521.1 MGP_C3HHeJ_G0025759.1 mouse_genomes_project 2 87969451 87970384 + MGP_C3HHeJ_P0055521 Olfr1152 protein_coding protein_coding MGP_C3HHeJ_T0101871.1 MGP_C3HHeJ_G0039836.1 mouse_genomes_project 2 20074345 20078911 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055450.1 MGP_C3HHeJ_G0025700.1 mouse_genomes_project 2 86343391 86344274 - MGP_C3HHeJ_P0055450 protein_coding protein_coding MGP_C3HHeJ_T0013361.1 MGP_C3HHeJ_G0011465.1 mouse_genomes_project 2 37515014 37515740 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013334.1 MGP_C3HHeJ_G0011438.1 mouse_genomes_project 2 28918116 28918496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098400.1 MGP_C3HHeJ_G0036606.1 mouse_genomes_project 2 138046447 138047420 + Gm14209 sense_intronic sense_intronic MGP_C3HHeJ_T0007163.1 MGP_C3HHeJ_G0005870.1 mouse_genomes_project 2 77485036 77487323 + Gm13661 lincRNA lincRNA MGP_C3HHeJ_T0003918.1 MGP_C3HHeJ_G0003492.1 mouse_genomes_project 2 65625027 65732115 + Gm13629 antisense antisense MGP_C3HHeJ_T0003919.1 MGP_C3HHeJ_G0003492.1 mouse_genomes_project 2 65625043 65695495 + Gm13629 antisense antisense MGP_C3HHeJ_T0003943.1 MGP_C3HHeJ_G0003508.1 mouse_genomes_project 2 73115016 73135958 + Chn1os3 antisense antisense MGP_C3HHeJ_T0003944.1 MGP_C3HHeJ_G0003508.1 mouse_genomes_project 2 73115314 73117691 + Chn1os3 antisense antisense MGP_C3HHeJ_T0001068.1 MGP_C3HHeJ_G0001004.1 mouse_genomes_project 2 159403458 159405131 - TEC TEC MGP_C3HHeJ_T0056310.1 MGP_C3HHeJ_G0025971.1 mouse_genomes_project 2 112111128 112169594 - MGP_C3HHeJ_P0056310 4930430A15Rik protein_coding protein_coding MGP_C3HHeJ_T0056311.1 MGP_C3HHeJ_G0025971.1 mouse_genomes_project 2 112153742 112197489 - MGP_C3HHeJ_P0056311 4930430A15Rik protein_coding protein_coding MGP_C3HHeJ_T0013680.1 MGP_C3HHeJ_G0011784.1 mouse_genomes_project 2 158734178 158737312 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056247.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107559874 107740114 + MGP_C3HHeJ_P0056247 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056248.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107561824 107612337 + MGP_C3HHeJ_P0056248 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056249.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107562213 107738966 + MGP_C3HHeJ_P0056249 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056250.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107562235 107653416 + Mpped2 protein_coding processed_transcript MGP_C3HHeJ_T0056251.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107562461 107738795 + MGP_C3HHeJ_P0056251 Mpped2 protein_coding protein_coding MGP_C3HHeJ_T0056252.1 MGP_C3HHeJ_G0025954.1 mouse_genomes_project 2 107598024 107653561 + Mpped2 protein_coding processed_transcript MGP_C3HHeJ_T0056335.1 MGP_C3HHeJ_G0025995.1 mouse_genomes_project 2 113189682 113190645 - MGP_C3HHeJ_P0056335 Olfr1309 protein_coding protein_coding MGP_C3HHeJ_T0100467.1 MGP_C3HHeJ_G0038661.1 mouse_genomes_project 2 91966065 91966176 + Snord67 snoRNA snoRNA MGP_C3HHeJ_T0056389.1 MGP_C3HHeJ_G0026018.1 mouse_genomes_project 2 115105629 115120897 - MGP_C3HHeJ_P0056389 Arhgap11a protein_coding protein_coding MGP_C3HHeJ_T0056390.1 MGP_C3HHeJ_G0026018.1 mouse_genomes_project 2 115105917 115121105 - MGP_C3HHeJ_P0056390 Arhgap11a protein_coding protein_coding MGP_C3HHeJ_T0057397.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259572 133263018 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057398.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259798 133272791 - MGP_C3HHeJ_P0057398 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057399.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259806 133272546 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057400.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259844 133265349 - MGP_C3HHeJ_P0057400 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057401.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133259856 133272522 - MGP_C3HHeJ_P0057401 Adam33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057402.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133260090 133272791 - MGP_C3HHeJ_P0057402 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057403.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133260091 133265463 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057404.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262023 133263508 - MGP_C3HHeJ_P0057404 Adam33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057405.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262071 133263498 - Adam33 protein_coding processed_transcript MGP_C3HHeJ_T0057406.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262202 133263041 - Adam33 protein_coding processed_transcript MGP_C3HHeJ_T0057407.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133262503 133263511 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0057408.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133266515 133272490 - MGP_C3HHeJ_P0057408 Adam33 protein_coding protein_coding MGP_C3HHeJ_T0057409.1 MGP_C3HHeJ_G0026238.1 mouse_genomes_project 2 133271034 133272520 - Adam33 protein_coding retained_intron MGP_C3HHeJ_T0098106.1 MGP_C3HHeJ_G0036318.1 mouse_genomes_project 2 105037594 105037707 + Gm25554 rRNA rRNA MGP_C3HHeJ_T0004054.1 MGP_C3HHeJ_G0003583.1 mouse_genomes_project 2 154995099 154998460 - Gm14154 antisense antisense MGP_C3HHeJ_T0058164.1 MGP_C3HHeJ_G0026442.1 mouse_genomes_project 2 158002518 158003294 - Gm14214 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0058165.1 MGP_C3HHeJ_G0026442.1 mouse_genomes_project 2 158002518 158003196 - MGP_C3HHeJ_P0058165 Gm14214 protein_coding protein_coding MGP_C3HHeJ_T0057033.1 MGP_C3HHeJ_G0026150.1 mouse_genomes_project 2 127599489 127691890 - MGP_C3HHeJ_P0057033 Shc4 protein_coding protein_coding MGP_C3HHeJ_T0057034.1 MGP_C3HHeJ_G0026150.1 mouse_genomes_project 2 127601624 127641239 - MGP_C3HHeJ_P0057034 Shc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057036.1 MGP_C3HHeJ_G0026150.1 mouse_genomes_project 2 127660389 127692651 - Shc4 protein_coding retained_intron MGP_C3HHeJ_T0004072.1 MGP_C3HHeJ_G0003600.1 mouse_genomes_project 2 162105173 162106084 - Gm14205 antisense antisense MGP_C3HHeJ_T0055140.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76307995 76587676 - MGP_C3HHeJ_P0055140 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055141.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76307995 76587676 - MGP_C3HHeJ_P0055141 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055142.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76307999 76587768 - MGP_C3HHeJ_P0055142 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055143.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76309046 76585403 - MGP_C3HHeJ_P0055143 Ttn protein_coding unknown_likely_coding MGP_C3HHeJ_T0055144.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76309046 76585403 - MGP_C3HHeJ_P0055144 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055145.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76418577 76542065 - MGP_C3HHeJ_P0055145 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055146.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419085 76496729 - MGP_C3HHeJ_P0055146 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055147.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419119 76474485 - MGP_C3HHeJ_P0055147 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055148.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419120 76474485 - MGP_C3HHeJ_P0055148 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055149.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419120 76474485 - MGP_C3HHeJ_P0055149 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055150.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419120 76474485 - MGP_C3HHeJ_P0055150 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055151.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76419138 76474485 - MGP_C3HHeJ_P0055151 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055152.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76425512 76430924 - MGP_C3HHeJ_P0055152 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055153.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76426911 76446667 - MGP_C3HHeJ_P0055153 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055154.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76435754 76436788 - MGP_C3HHeJ_P0055154 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055155.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76436529 76438621 - MGP_C3HHeJ_P0055155 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055156.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76441478 76442328 - MGP_C3HHeJ_P0055156 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055157.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76441478 76444410 - MGP_C3HHeJ_P0055157 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055158.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76449746 76453274 - MGP_C3HHeJ_P0055158 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055159.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76455374 76477416 - MGP_C3HHeJ_P0055159 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055160.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76495554 76496311 - Ttn protein_coding processed_transcript MGP_C3HHeJ_T0055161.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76520483 76587676 - MGP_C3HHeJ_P0055161 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055162.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76545748 76548349 - Ttn protein_coding retained_intron MGP_C3HHeJ_T0055163.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76568038 76587768 - Ttn protein_coding retained_intron MGP_C3HHeJ_T0055164.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76568844 76587768 - MGP_C3HHeJ_P0055164 Ttn protein_coding protein_coding MGP_C3HHeJ_T0055165.1 MGP_C3HHeJ_G0025602.1 mouse_genomes_project 2 76576805 76587768 - Ttn protein_coding retained_intron MGP_C3HHeJ_T0057968.1 MGP_C3HHeJ_G0026383.1 mouse_genomes_project 2 155591837 155595030 + MGP_C3HHeJ_P0057968 Defb28 protein_coding protein_coding MGP_C3HHeJ_T0058235.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158847199 158880287 - MGP_C3HHeJ_P0058235 Gss protein_coding protein_coding MGP_C3HHeJ_T0058236.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158847207 158880191 - MGP_C3HHeJ_P0058236 Gss protein_coding protein_coding MGP_C3HHeJ_T0058237.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158847507 158858690 - MGP_C3HHeJ_P0058237 Gss protein_coding protein_coding MGP_C3HHeJ_T0058238.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158848229 158860075 - Gss protein_coding retained_intron MGP_C3HHeJ_T0058241.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158858650 158868855 - MGP_C3HHeJ_P0058241 Gss protein_coding protein_coding MGP_C3HHeJ_T0058242.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158862480 158880204 - Gss protein_coding processed_transcript MGP_C3HHeJ_T0058243.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158863216 158873773 - Gss protein_coding retained_intron MGP_C3HHeJ_T0058244.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158863287 158880044 - MGP_C3HHeJ_P0058244 Gss protein_coding protein_coding MGP_C3HHeJ_T0058245.1 MGP_C3HHeJ_G0026455.1 mouse_genomes_project 2 158863999 158868847 - Gss protein_coding processed_transcript MGP_C3HHeJ_T0013600.1 MGP_C3HHeJ_G0011704.1 mouse_genomes_project 2 129682434 129691878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054971.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323432 71354491 + MGP_C3HHeJ_P0054971 Pdk1 protein_coding protein_coding MGP_C3HHeJ_T0054972.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323528 71334579 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054973.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323534 71336959 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054974.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323554 71352619 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054975.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323759 71334831 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054976.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71323951 71339599 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054977.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71325287 71334254 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0054978.1 MGP_C3HHeJ_G0025559.1 mouse_genomes_project 2 71338064 71347126 + Pdk1 protein_coding processed_transcript MGP_C3HHeJ_T0013552.1 MGP_C3HHeJ_G0011656.1 mouse_genomes_project 2 105304008 105305031 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059338.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184661883 184711142 + MGP_C3HHeJ_P0059338 Osbpl2 protein_coding protein_coding MGP_C3HHeJ_T0059339.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184661912 184685627 + Osbpl2 protein_coding processed_transcript MGP_C3HHeJ_T0059340.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184661981 184707681 + Osbpl2 protein_coding retained_intron MGP_C3HHeJ_T0059341.1 MGP_C3HHeJ_G0026703.1 mouse_genomes_project 2 184697919 184699949 + Osbpl2 protein_coding retained_intron MGP_C3HHeJ_T0058022.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156103059 156115104 - MGP_C3HHeJ_P0058022 Pdrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058023.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156103059 156115104 - MGP_C3HHeJ_P0058023 Pdrg1 protein_coding protein_coding MGP_C3HHeJ_T0058024.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156103640 156112167 - Pdrg1 protein_coding retained_intron MGP_C3HHeJ_T0058025.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156104465 156115043 - MGP_C3HHeJ_P0058025 Pdrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058026.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156111889 156115023 - Pdrg1 protein_coding retained_intron MGP_C3HHeJ_T0058027.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156112059 156115039 - MGP_C3HHeJ_P0058027 Pdrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058028.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156113027 156115054 - Pdrg1 protein_coding retained_intron MGP_C3HHeJ_T0058029.1 MGP_C3HHeJ_G0026402.1 mouse_genomes_project 2 156113691 156115019 - Pdrg1 protein_coding processed_transcript MGP_C3HHeJ_T0055113.1 MGP_C3HHeJ_G0025591.1 mouse_genomes_project 2 75521900 75526408 - MGP_C3HHeJ_P0055113 protein_coding protein_coding MGP_C3HHeJ_T0058580.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844646 161855158 + MGP_C3HHeJ_P0058580 Snhg11 protein_coding protein_coding MGP_C3HHeJ_T0058581.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844669 161846215 + Snhg11 protein_coding retained_intron MGP_C3HHeJ_T0058582.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844706 161850598 + MGP_C3HHeJ_P0058582 Snhg11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058583.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844723 161848071 + Snhg11 protein_coding retained_intron MGP_C3HHeJ_T0058584.1 MGP_C3HHeJ_G0026510.1 mouse_genomes_project 2 161844733 161850071 + MGP_C3HHeJ_P0058584 Snhg11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013516.1 MGP_C3HHeJ_G0011620.1 mouse_genomes_project 2 91892036 91892341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013531.1 MGP_C3HHeJ_G0011635.1 mouse_genomes_project 2 98481273 98482325 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055558.1 MGP_C3HHeJ_G0025794.1 mouse_genomes_project 2 88965106 88967532 + MGP_C3HHeJ_P0055558 Olfr1205 protein_coding protein_coding MGP_C3HHeJ_T0053654.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29322563 29474828 + MGP_C3HHeJ_P0053654 Hmcn2 protein_coding protein_coding MGP_C3HHeJ_T0053655.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29322563 29474485 + MGP_C3HHeJ_P0053655 Hmcn2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053656.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29411509 29417033 + MGP_C3HHeJ_P0053656 Hmcn2 protein_coding protein_coding MGP_C3HHeJ_T0053657.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29451175 29474813 + Hmcn2 protein_coding retained_intron MGP_C3HHeJ_T0053658.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29459847 29474827 + Hmcn2 protein_coding processed_transcript MGP_C3HHeJ_T0053659.1 MGP_C3HHeJ_G0025319.1 mouse_genomes_project 2 29468804 29472087 + Hmcn2 protein_coding retained_intron MGP_C3HHeJ_T0052976.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23764996 23812097 - MGP_C3HHeJ_P0052976 Nacc2 protein_coding protein_coding MGP_C3HHeJ_T0052977.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23764996 23852625 - MGP_C3HHeJ_P0052977 Nacc2 protein_coding protein_coding MGP_C3HHeJ_T0052978.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23770543 23771970 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052979.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23773849 23811739 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052980.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23773971 23810295 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052981.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23809726 23853027 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0052982.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23810005 23852590 - MGP_C3HHeJ_P0052982 Nacc2 protein_coding protein_coding MGP_C3HHeJ_T0052983.1 MGP_C3HHeJ_G0025211.1 mouse_genomes_project 2 23810247 23852595 - Nacc2 protein_coding processed_transcript MGP_C3HHeJ_T0003895.1 MGP_C3HHeJ_G0003475.1 mouse_genomes_project 2 37155824 37171464 + Nr6a1os antisense antisense MGP_C3HHeJ_T0003896.1 MGP_C3HHeJ_G0003475.1 mouse_genomes_project 2 37155908 37186060 + Nr6a1os antisense antisense MGP_C3HHeJ_T0056326.1 MGP_C3HHeJ_G0025986.1 mouse_genomes_project 2 112765282 112766221 - MGP_C3HHeJ_P0056326 Olfr1297 protein_coding protein_coding MGP_C3HHeJ_T0056243.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106759697 106813609 - Dnajc24 protein_coding processed_transcript MGP_C3HHeJ_T0056244.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106759877 106813568 - MGP_C3HHeJ_P0056244 Dnajc24 protein_coding protein_coding MGP_C3HHeJ_T0056245.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106759925 106813548 - Dnajc24 protein_coding processed_transcript MGP_C3HHeJ_T0056246.1 MGP_C3HHeJ_G0025953.1 mouse_genomes_project 2 106763353 106812537 - Dnajc24 protein_coding processed_transcript MGP_C3HHeJ_T0100504.1 MGP_C3HHeJ_G0038698.1 mouse_genomes_project 2 161826810 161826923 - Gm26003 snoRNA snoRNA MGP_C3HHeJ_T0059571.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186196372 186207103 - MGP_C3HHeJ_P0059571 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059572.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186196374 186205225 - MGP_C3HHeJ_P0059572 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059573.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186198858 186200672 - Zfp512b protein_coding retained_intron MGP_C3HHeJ_T0059574.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186199446 186200578 - MGP_C3HHeJ_P0059574 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059575.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186199452 186200630 - MGP_C3HHeJ_P0059575 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0059576.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186200989 186201951 - Zfp512b protein_coding retained_intron MGP_C3HHeJ_T0059577.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186201385 186203045 - MGP_C3HHeJ_P0059577 Zfp512b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059578.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186202371 186203592 - Zfp512b protein_coding processed_transcript MGP_C3HHeJ_T0059579.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186204328 186207058 - Zfp512b protein_coding processed_transcript MGP_C3HHeJ_T0059580.1 MGP_C3HHeJ_G0026745.1 mouse_genomes_project 2 186204827 186207103 - MGP_C3HHeJ_P0059580 Zfp512b protein_coding protein_coding MGP_C3HHeJ_T0007059.1 MGP_C3HHeJ_G0005787.1 mouse_genomes_project 2 8624069 8626091 + Gm13291 lincRNA lincRNA MGP_C3HHeJ_T0017596.1 MGP_C3HHeJ_G0015210.1 mouse_genomes_project 2 94894786 94900318 + 2810002D19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013405.1 MGP_C3HHeJ_G0011509.1 mouse_genomes_project 2 54166028 54167054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053806.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476302 30479392 - Lcn2 protein_coding processed_transcript MGP_C3HHeJ_T0053807.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476302 30479467 - MGP_C3HHeJ_P0053807 Lcn2 protein_coding protein_coding MGP_C3HHeJ_T0053808.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476308 30477669 - Lcn2 protein_coding retained_intron MGP_C3HHeJ_T0053809.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30476852 30477777 - Lcn2 protein_coding retained_intron MGP_C3HHeJ_T0053810.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30477114 30479922 - MGP_C3HHeJ_P0053810 Lcn2 protein_coding protein_coding MGP_C3HHeJ_T0053811.1 MGP_C3HHeJ_G0025339.1 mouse_genomes_project 2 30478225 30479429 - Lcn2 protein_coding retained_intron MGP_C3HHeJ_T0057665.1 MGP_C3HHeJ_G0026296.1 mouse_genomes_project 2 146504639 146546837 - MGP_C3HHeJ_P0057665 Bfsp1 protein_coding protein_coding MGP_C3HHeJ_T0057666.1 MGP_C3HHeJ_G0026296.1 mouse_genomes_project 2 146504639 146546607 - MGP_C3HHeJ_P0057666 Bfsp1 protein_coding protein_coding MGP_C3HHeJ_T0001000.1 MGP_C3HHeJ_G0000937.1 mouse_genomes_project 2 8787940 8790043 - TEC TEC MGP_C3HHeJ_T0013643.1 MGP_C3HHeJ_G0011747.1 mouse_genomes_project 2 146565067 146565400 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097896.1 MGP_C3HHeJ_G0036108.1 mouse_genomes_project 2 94445014 94445763 - pseudogene pseudogene MGP_C3HHeJ_T0007331.1 MGP_C3HHeJ_G0006007.1 mouse_genomes_project 2 173472132 173478400 - 4930529I22Rik lincRNA lincRNA MGP_C3HHeJ_T0053979.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31593250 31605007 - MGP_C3HHeJ_P0053979 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053980.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31593250 31612208 - MGP_C3HHeJ_P0053980 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053981.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31596485 31612181 - MGP_C3HHeJ_P0053981 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053982.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31597582 31607736 - MGP_C3HHeJ_P0053982 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0053983.1 MGP_C3HHeJ_G0025368.1 mouse_genomes_project 2 31597851 31612235 - MGP_C3HHeJ_P0053983 Zbtb43 protein_coding protein_coding MGP_C3HHeJ_T0100462.1 MGP_C3HHeJ_G0038656.1 mouse_genomes_project 2 66647489 66647621 + Gm23328 snoRNA snoRNA MGP_C3HHeJ_T0010353.1 MGP_C3HHeJ_G0008486.1 mouse_genomes_project 2 94746693 94746793 - Mir670 miRNA miRNA MGP_C3HHeJ_T0054195.1 MGP_C3HHeJ_G0025422.1 mouse_genomes_project 2 35482720 35487973 + MGP_C3HHeJ_P0054195 protein_coding protein_coding MGP_C3HHeJ_T0055959.1 MGP_C3HHeJ_G0025897.1 mouse_genomes_project 2 94038850 94042643 + MGP_C3HHeJ_P0055959 Gm10803 protein_coding protein_coding MGP_C3HHeJ_T0055114.1 MGP_C3HHeJ_G0025592.1 mouse_genomes_project 2 75564829 75567294 - MGP_C3HHeJ_P0055114 Ttc30a2 protein_coding protein_coding MGP_C3HHeJ_T0017688.1 MGP_C3HHeJ_G0015249.1 mouse_genomes_project 2 163497651 163531644 + 4933416E03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013424.1 MGP_C3HHeJ_G0011528.1 mouse_genomes_project 2 59552490 59553632 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058777.1 MGP_C3HHeJ_G0026565.1 mouse_genomes_project 2 168076650 168079085 - MGP_C3HHeJ_P0058777 Slpi protein_coding protein_coding MGP_C3HHeJ_T0058778.1 MGP_C3HHeJ_G0026565.1 mouse_genomes_project 2 168076742 168078645 - MGP_C3HHeJ_P0058778 Slpi protein_coding protein_coding MGP_C3HHeJ_T0058779.1 MGP_C3HHeJ_G0026565.1 mouse_genomes_project 2 168078172 168112606 - MGP_C3HHeJ_P0058779 Slpi protein_coding protein_coding MGP_C3HHeJ_T0052786.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988484 23005797 + MGP_C3HHeJ_P0052786 Man1b1 protein_coding protein_coding MGP_C3HHeJ_T0052787.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988875 23014831 + MGP_C3HHeJ_P0052787 Man1b1 protein_coding protein_coding MGP_C3HHeJ_T0052788.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988908 23007065 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0052789.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22988919 22994316 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0052790.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 22994259 23007779 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0052791.1 MGP_C3HHeJ_G0025173.1 mouse_genomes_project 2 23007513 23008217 + Man1b1 protein_coding processed_transcript MGP_C3HHeJ_T0058676.1 MGP_C3HHeJ_G0026529.1 mouse_genomes_project 2 166559127 166559782 - MGP_C3HHeJ_P0058676 Cisd3 protein_coding protein_coding MGP_C3HHeJ_T0013502.1 MGP_C3HHeJ_G0011606.1 mouse_genomes_project 2 87378776 87379008 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057812.1 MGP_C3HHeJ_G0026333.1 mouse_genomes_project 2 151638029 151641942 + MGP_C3HHeJ_P0057812 8030411F24Rik protein_coding protein_coding MGP_C3HHeJ_T0056949.1 MGP_C3HHeJ_G0026130.1 mouse_genomes_project 2 124023823 124027858 + MGP_C3HHeJ_P0056949 Duoxa2 protein_coding protein_coding MGP_C3HHeJ_T0017647.1 MGP_C3HHeJ_G0015230.1 mouse_genomes_project 2 131183293 131188184 - Gm14022 processed_transcript processed_transcript MGP_C3HHeJ_T0100448.1 MGP_C3HHeJ_G0038642.1 mouse_genomes_project 2 38674495 38674621 + Gm24467 snoRNA snoRNA MGP_C3HHeJ_T0101178.1 MGP_C3HHeJ_G0039327.1 mouse_genomes_project 2 134098905 134099145 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0059354.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806449 184807518 + MGP_C3HHeJ_P0059354 Rps21 protein_coding protein_coding MGP_C3HHeJ_T0059355.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806451 184807515 + Rps21 protein_coding retained_intron MGP_C3HHeJ_T0059356.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806490 184807067 + Rps21 protein_coding retained_intron MGP_C3HHeJ_T0059357.1 MGP_C3HHeJ_G0026706.1 mouse_genomes_project 2 184806490 184807216 + Rps21 protein_coding retained_intron MGP_C3HHeJ_T0057284.1 MGP_C3HHeJ_G0026212.1 mouse_genomes_project 2 132172554 132210559 + MGP_C3HHeJ_P0057284 protein_coding protein_coding MGP_C3HHeJ_T0053547.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367031 28402841 + MGP_C3HHeJ_P0053547 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053548.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367123 28402842 + MGP_C3HHeJ_P0053548 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053549.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367129 28386014 + MGP_C3HHeJ_P0053549 Ptpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053550.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367134 28402653 + MGP_C3HHeJ_P0053550 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053551.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367188 28402840 + Ptpa protein_coding retained_intron MGP_C3HHeJ_T0053552.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28367294 28382390 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0053553.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28382341 28393137 + Ptpa protein_coding retained_intron MGP_C3HHeJ_T0053554.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28393264 28401986 + MGP_C3HHeJ_P0053554 Ptpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053555.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28396888 28402167 + MGP_C3HHeJ_P0053555 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053556.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28397770 28401842 + MGP_C3HHeJ_P0053556 Ptpa protein_coding protein_coding MGP_C3HHeJ_T0053557.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28398254 28401935 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0053558.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28400691 28402110 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0053559.1 MGP_C3HHeJ_G0025304.1 mouse_genomes_project 2 28400751 28401812 + Ptpa protein_coding processed_transcript MGP_C3HHeJ_T0013508.1 MGP_C3HHeJ_G0011612.1 mouse_genomes_project 2 87639267 87639991 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003816.1 MGP_C3HHeJ_G0003413.1 mouse_genomes_project 2 1583776 1585040 - Gm13179 antisense antisense MGP_C3HHeJ_T0003817.1 MGP_C3HHeJ_G0003413.1 mouse_genomes_project 2 1584080 1585040 - Gm13179 antisense antisense MGP_C3HHeJ_T0010248.1 MGP_C3HHeJ_G0008381.1 mouse_genomes_project 2 6394167 6394244 - Gm23963 miRNA miRNA MGP_C3HHeJ_T0057798.1 MGP_C3HHeJ_G0026326.1 mouse_genomes_project 2 151267634 151271357 - MGP_C3HHeJ_P0057798 Thbd protein_coding protein_coding MGP_C3HHeJ_T0003977.1 MGP_C3HHeJ_G0003528.1 mouse_genomes_project 2 106333127 106467858 - Pax6os1 antisense antisense MGP_C3HHeJ_T0003978.1 MGP_C3HHeJ_G0003528.1 mouse_genomes_project 2 106334216 106467808 - Pax6os1 antisense antisense MGP_C3HHeJ_T0013653.1 MGP_C3HHeJ_G0011757.1 mouse_genomes_project 2 149680862 149681465 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055872.1 MGP_C3HHeJ_G0025883.1 mouse_genomes_project 2 92388048 92430199 - MGP_C3HHeJ_P0055872 Creb3l1 protein_coding protein_coding MGP_C3HHeJ_T0058249.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158921865 158984227 - MGP_C3HHeJ_P0058249 Trpc4ap protein_coding protein_coding MGP_C3HHeJ_T0058250.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158921902 158984175 - MGP_C3HHeJ_P0058250 Trpc4ap protein_coding protein_coding MGP_C3HHeJ_T0058251.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158922339 158925337 - Trpc4ap protein_coding processed_transcript MGP_C3HHeJ_T0058252.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158923190 158925383 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058253.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158926576 158961843 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058254.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158926583 158928135 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058255.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158931213 158952594 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058256.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158942233 158984225 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058257.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158954661 158957292 - Trpc4ap protein_coding retained_intron MGP_C3HHeJ_T0058258.1 MGP_C3HHeJ_G0026457.1 mouse_genomes_project 2 158961848 158983966 - Trpc4ap protein_coding processed_transcript MGP_C3HHeJ_T0013661.1 MGP_C3HHeJ_G0011765.1 mouse_genomes_project 2 151277096 151277331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001033.1 MGP_C3HHeJ_G0000970.1 mouse_genomes_project 2 33671742 33672733 - TEC TEC MGP_C3HHeJ_T0054376.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47539579 47586806 - MGP_C3HHeJ_P0054376 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054377.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47541635 47546193 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054378.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47542071 47586761 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054379.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47542134 47546848 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054380.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47542169 47548755 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054381.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47547583 47586764 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054382.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47553384 47587569 - MGP_C3HHeJ_P0054382 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054383.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47566531 47577901 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054384.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47568863 47586764 - MGP_C3HHeJ_P0054384 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054385.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47570058 47571108 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054386.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47574011 47586762 - Orc4 protein_coding processed_transcript MGP_C3HHeJ_T0054387.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47574307 47586771 - MGP_C3HHeJ_P0054387 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0054388.1 MGP_C3HHeJ_G0025452.1 mouse_genomes_project 2 47574378 47587807 - MGP_C3HHeJ_P0054388 Orc4 protein_coding protein_coding MGP_C3HHeJ_T0004111.1 MGP_C3HHeJ_G0003628.1 mouse_genomes_project 2 177566358 177568089 + Pmepa1os antisense antisense MGP_C3HHeJ_T0058884.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168644122 168648873 + Pcif1 protein_coding retained_intron MGP_C3HHeJ_T0058885.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168644183 168660146 + MGP_C3HHeJ_P0058885 Pcif1 protein_coding protein_coding MGP_C3HHeJ_T0058886.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168644870 168648784 + Pcif1 protein_coding retained_intron MGP_C3HHeJ_T0058887.1 MGP_C3HHeJ_G0026599.1 mouse_genomes_project 2 168649606 168650368 + Pcif1 protein_coding retained_intron MGP_C3HHeJ_T0007283.1 MGP_C3HHeJ_G0005966.1 mouse_genomes_project 2 159777024 159780744 - Gm14224 lincRNA lincRNA MGP_C3HHeJ_T0101388.1 MGP_C3HHeJ_G0039439.1 mouse_genomes_project 2 35556204 35560097 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101389.1 MGP_C3HHeJ_G0039439.1 mouse_genomes_project 2 35559665 35560610 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013416.1 MGP_C3HHeJ_G0011520.1 mouse_genomes_project 2 57854637 57854966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051991.1 MGP_C3HHeJ_G0025034.1 mouse_genomes_project 2 73602 190248 + MGP_C3HHeJ_P0051991 Fam171a1 protein_coding protein_coding MGP_C3HHeJ_T0051992.1 MGP_C3HHeJ_G0025034.1 mouse_genomes_project 2 73731 190245 + MGP_C3HHeJ_P0051992 Fam171a1 protein_coding protein_coding MGP_C3HHeJ_T0055612.1 MGP_C3HHeJ_G0025836.1 mouse_genomes_project 2 90069415 90075120 - MGP_C3HHeJ_P0055612 Olfr1256 protein_coding protein_coding MGP_C3HHeJ_T0055613.1 MGP_C3HHeJ_G0025836.1 mouse_genomes_project 2 90069415 90070336 - MGP_C3HHeJ_P0055613 Olfr1256 protein_coding protein_coding MGP_C3HHeJ_T0013519.1 MGP_C3HHeJ_G0011623.1 mouse_genomes_project 2 92659664 92659997 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013520.1 MGP_C3HHeJ_G0011624.1 mouse_genomes_project 2 92739231 92739921 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054778.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67470786 67748071 - MGP_C3HHeJ_P0054778 Stk39 protein_coding protein_coding MGP_C3HHeJ_T0054779.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67470789 67632318 - Stk39 protein_coding retained_intron MGP_C3HHeJ_T0054780.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472081 67483675 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054781.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472081 67512509 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054782.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472081 67512514 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054783.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67472087 67512487 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0054784.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67524890 67747743 - Stk39 protein_coding retained_intron MGP_C3HHeJ_T0054785.1 MGP_C3HHeJ_G0025522.1 mouse_genomes_project 2 67624088 67657226 - Stk39 protein_coding processed_transcript MGP_C3HHeJ_T0057729.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147911172 148389992 + MGP_C3HHeJ_P0057729 Slc24a3 protein_coding protein_coding MGP_C3HHeJ_T0057730.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147911337 148263114 + Slc24a3 protein_coding processed_transcript MGP_C3HHeJ_T0057731.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147977998 148389992 + Slc24a3 protein_coding processed_transcript MGP_C3HHeJ_T0057732.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 147978009 148388192 + MGP_C3HHeJ_P0057732 Slc24a3 protein_coding protein_coding MGP_C3HHeJ_T0057733.1 MGP_C3HHeJ_G0026312.1 mouse_genomes_project 2 148357118 148366218 + Slc24a3 protein_coding processed_transcript MGP_C3HHeJ_T0058835.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168499419 168524642 + MGP_C3HHeJ_P0058835 Dnttip1 protein_coding protein_coding MGP_C3HHeJ_T0058836.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168499450 168504889 + MGP_C3HHeJ_P0058836 Dnttip1 protein_coding protein_coding MGP_C3HHeJ_T0058837.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168499467 168516579 + MGP_C3HHeJ_P0058837 Dnttip1 protein_coding protein_coding MGP_C3HHeJ_T0058838.1 MGP_C3HHeJ_G0026588.1 mouse_genomes_project 2 168507632 168514578 + Dnttip1 protein_coding retained_intron MGP_C3HHeJ_T0052462.1 MGP_C3HHeJ_G0025112.1 mouse_genomes_project 2 16507826 16509281 + MGP_C3HHeJ_P0052462 4930426L09Rik protein_coding protein_coding MGP_C3HHeJ_T0001058.1 MGP_C3HHeJ_G0000995.1 mouse_genomes_project 2 96348945 96372689 + TEC TEC MGP_C3HHeJ_T0099201.1 MGP_C3HHeJ_G0037395.1 mouse_genomes_project 2 80741291 80741398 - Gm23452 snRNA snRNA MGP_C3HHeJ_T0007164.1 MGP_C3HHeJ_G0005871.1 mouse_genomes_project 2 77686627 77706470 + lincRNA lincRNA MGP_C3HHeJ_T0007165.1 MGP_C3HHeJ_G0005871.1 mouse_genomes_project 2 77686673 77847039 + lincRNA lincRNA MGP_C3HHeJ_T0056033.1 MGP_C3HHeJ_G0025910.1 mouse_genomes_project 2 102292388 102300185 + MGP_C3HHeJ_P0056033 Rag2 protein_coding protein_coding MGP_C3HHeJ_T0056034.1 MGP_C3HHeJ_G0025910.1 mouse_genomes_project 2 102292416 102298709 + MGP_C3HHeJ_P0056034 Rag2 protein_coding protein_coding MGP_C3HHeJ_T0056320.1 MGP_C3HHeJ_G0025980.1 mouse_genomes_project 2 112458919 112465675 - MGP_C3HHeJ_P0056320 Olfr1283 protein_coding protein_coding MGP_C3HHeJ_T0058007.1 MGP_C3HHeJ_G0026398.1 mouse_genomes_project 2 156001452 156012970 + MGP_C3HHeJ_P0058007 Mylk2 protein_coding protein_coding MGP_C3HHeJ_T0001028.1 MGP_C3HHeJ_G0000965.1 mouse_genomes_project 2 22515855 22520920 - TEC TEC MGP_C3HHeJ_T0057648.1 MGP_C3HHeJ_G0026291.1 mouse_genomes_project 2 143241181 143261708 - Flrt3 protein_coding processed_transcript MGP_C3HHeJ_T0057649.1 MGP_C3HHeJ_G0026291.1 mouse_genomes_project 2 143248465 143261727 - MGP_C3HHeJ_P0057649 Flrt3 protein_coding protein_coding MGP_C3HHeJ_T0057650.1 MGP_C3HHeJ_G0026291.1 mouse_genomes_project 2 143249584 143261658 - MGP_C3HHeJ_P0057650 Flrt3 protein_coding protein_coding MGP_C3HHeJ_T0003915.1 MGP_C3HHeJ_G0003489.1 mouse_genomes_project 2 65032058 65040280 - Gm13619 antisense antisense MGP_C3HHeJ_T0053992.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32350799 32562915 - MGP_C3HHeJ_P0053992 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0053993.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32352214 32476586 - Pbx3 protein_coding processed_transcript MGP_C3HHeJ_T0053994.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32352222 32562915 - MGP_C3HHeJ_P0053994 Pbx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053995.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32352222 32562915 - MGP_C3HHeJ_P0053995 Pbx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053996.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32356200 32561841 - MGP_C3HHeJ_P0053996 Pbx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053997.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32397193 32564879 - MGP_C3HHeJ_P0053997 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0053998.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32408190 32562248 - MGP_C3HHeJ_P0053998 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0053999.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32408317 32562145 - MGP_C3HHeJ_P0053999 Pbx3 protein_coding protein_coding MGP_C3HHeJ_T0054000.1 MGP_C3HHeJ_G0025371.1 mouse_genomes_project 2 32559106 32562787 - Pbx3 protein_coding retained_intron MGP_C3HHeJ_T0011412.1 MGP_C3HHeJ_G0009545.1 mouse_genomes_project 2 105912950 105913072 - Gm27636 misc_RNA misc_RNA MGP_C3HHeJ_T0058049.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347421 156382328 + MGP_C3HHeJ_P0058049 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058050.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347429 156375229 + MGP_C3HHeJ_P0058050 Pofut1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058051.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347429 156375229 + MGP_C3HHeJ_P0058051 Pofut1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058052.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347439 156371213 + MGP_C3HHeJ_P0058052 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058053.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347457 156358244 + Pofut1 protein_coding retained_intron MGP_C3HHeJ_T0058054.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156347466 156378584 + MGP_C3HHeJ_P0058054 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058055.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156366226 156379367 + MGP_C3HHeJ_P0058055 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0058056.1 MGP_C3HHeJ_G0026408.1 mouse_genomes_project 2 156366316 156380144 + MGP_C3HHeJ_P0058056 Pofut1 protein_coding protein_coding MGP_C3HHeJ_T0007250.1 MGP_C3HHeJ_G0005938.1 mouse_genomes_project 2 135242130 135243494 + Gm14102 lincRNA lincRNA MGP_C3HHeJ_T0055663.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91176998 91197886 + MGP_C3HHeJ_P0055663 Mtch2 protein_coding protein_coding MGP_C3HHeJ_T0055664.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177021 91196464 + MGP_C3HHeJ_P0055664 Mtch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055665.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177033 91178158 + Mtch2 protein_coding processed_transcript MGP_C3HHeJ_T0055666.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177074 91197716 + MGP_C3HHeJ_P0055666 Mtch2 protein_coding protein_coding MGP_C3HHeJ_T0055667.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177096 91182696 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055668.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177116 91197716 + MGP_C3HHeJ_P0055668 Mtch2 protein_coding protein_coding MGP_C3HHeJ_T0055669.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177130 91196467 + Mtch2 protein_coding processed_transcript MGP_C3HHeJ_T0055670.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91177142 91196346 + MGP_C3HHeJ_P0055670 Mtch2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055671.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91183266 91186823 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055672.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91183901 91187940 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055673.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91192315 91196547 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0055674.1 MGP_C3HHeJ_G0025854.1 mouse_genomes_project 2 91194534 91196464 + Mtch2 protein_coding retained_intron MGP_C3HHeJ_T0054818.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68739507 68911891 - MGP_C3HHeJ_P0054818 Lrp2 protein_coding protein_coding MGP_C3HHeJ_T0054819.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68823857 68911855 - MGP_C3HHeJ_P0054819 Lrp2 protein_coding protein_coding MGP_C3HHeJ_T0054820.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68825276 68826799 - Lrp2 protein_coding processed_transcript MGP_C3HHeJ_T0054821.1 MGP_C3HHeJ_G0025531.1 mouse_genomes_project 2 68845911 68911855 - MGP_C3HHeJ_P0054821 Lrp2 protein_coding protein_coding MGP_C3HHeJ_T0099214.1 MGP_C3HHeJ_G0037408.1 mouse_genomes_project 2 130190734 130190871 + Gm23101 snRNA snRNA MGP_C3HHeJ_T0052262.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9003212 9004291 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0052263.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9003214 9037142 - MGP_C3HHeJ_P0052263 Fbxo18 protein_coding protein_coding MGP_C3HHeJ_T0052264.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9004306 9009546 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052265.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9008166 9037067 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052266.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9008753 9017125 - MGP_C3HHeJ_P0052266 Fbxo18 protein_coding protein_coding MGP_C3HHeJ_T0052267.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9009771 9012083 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052268.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9011992 9018042 - Fbxo18 protein_coding retained_intron MGP_C3HHeJ_T0052269.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9022500 9037110 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0052270.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9023793 9037108 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0052271.1 MGP_C3HHeJ_G0025081.1 mouse_genomes_project 2 9027063 9037067 - Fbxo18 protein_coding processed_transcript MGP_C3HHeJ_T0055261.1 MGP_C3HHeJ_G0025620.1 mouse_genomes_project 2 80382011 80401967 + MGP_C3HHeJ_P0055261 Nup35 protein_coding protein_coding MGP_C3HHeJ_T0007328.1 MGP_C3HHeJ_G0006004.1 mouse_genomes_project 2 173161257 173165219 + Gm14258 lincRNA lincRNA MGP_C3HHeJ_T0010333.1 MGP_C3HHeJ_G0008466.1 mouse_genomes_project 2 66921015 66921075 + Mir7224 miRNA miRNA MGP_C3HHeJ_T0001040.1 MGP_C3HHeJ_G0000977.1 mouse_genomes_project 2 36407398 36410303 - TEC TEC MGP_C3HHeJ_T0055550.1 MGP_C3HHeJ_G0025786.1 mouse_genomes_project 2 88812407 88813334 - MGP_C3HHeJ_P0055550 Olfr1195 protein_coding protein_coding MGP_C3HHeJ_T0052917.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23309835 23311774 - MGP_C3HHeJ_P0052917 Tmem141 protein_coding protein_coding MGP_C3HHeJ_T0052918.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23309835 23311754 - MGP_C3HHeJ_P0052918 Tmem141 protein_coding protein_coding MGP_C3HHeJ_T0052919.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23309872 23311732 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052920.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23310095 23311549 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052921.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23310815 23311740 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052922.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23310815 23311737 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0052923.1 MGP_C3HHeJ_G0025194.1 mouse_genomes_project 2 23311262 23311676 - Tmem141 protein_coding processed_transcript MGP_C3HHeJ_T0007303.1 MGP_C3HHeJ_G0005984.1 mouse_genomes_project 2 169807548 169816480 - Platr29 lincRNA lincRNA MGP_C3HHeJ_T0013583.1 MGP_C3HHeJ_G0011687.1 mouse_genomes_project 2 116359477 116360371 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058057.1 MGP_C3HHeJ_G0026409.1 mouse_genomes_project 2 156411366 156457748 + MGP_C3HHeJ_P0058057 Kif3b protein_coding protein_coding MGP_C3HHeJ_T0013433.1 MGP_C3HHeJ_G0011537.1 mouse_genomes_project 2 64408611 64409621 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013534.1 MGP_C3HHeJ_G0011638.1 mouse_genomes_project 2 99197969 99198294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007085.1 MGP_C3HHeJ_G0005805.1 mouse_genomes_project 2 26113804 26122654 - Gm13373 lincRNA lincRNA MGP_C3HHeJ_T0003914.1 MGP_C3HHeJ_G0003488.1 mouse_genomes_project 2 64660349 64663674 + Gm13595 antisense antisense MGP_C3HHeJ_T0056680.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993421 122013762 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056681.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993726 122009611 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056682.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993727 122059861 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056683.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993735 122014527 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056684.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993749 122063518 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056685.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993839 122009609 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056686.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121993863 122005777 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056687.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121994293 122064376 + MGP_C3HHeJ_P0056687 Ganc protein_coding protein_coding MGP_C3HHeJ_T0056688.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121994299 122004480 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056689.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121994505 122063541 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056690.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 121995651 122062891 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056691.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 122001731 122035249 + Ganc protein_coding retained_intron MGP_C3HHeJ_T0056692.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 122013603 122021108 + Ganc protein_coding processed_transcript MGP_C3HHeJ_T0056693.1 MGP_C3HHeJ_G0026086.1 mouse_genomes_project 2 122055135 122063013 + Ganc protein_coding retained_intron MGP_C3HHeJ_T0058319.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159325431 159335543 + MGP_C3HHeJ_P0058319 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058320.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159325492 159335543 + MGP_C3HHeJ_P0058320 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058321.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159325609 159328609 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0058322.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159326005 159334902 + MGP_C3HHeJ_P0058322 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058323.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159327824 159335351 + MGP_C3HHeJ_P0058323 Ergic3 protein_coding protein_coding MGP_C3HHeJ_T0058324.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159333772 159335414 + Ergic3 protein_coding processed_transcript MGP_C3HHeJ_T0058325.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334478 159335360 + Ergic3 protein_coding processed_transcript MGP_C3HHeJ_T0058326.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334757 159335543 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0058327.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334809 159335543 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0058328.1 MGP_C3HHeJ_G0026470.1 mouse_genomes_project 2 159334911 159335541 + Ergic3 protein_coding retained_intron MGP_C3HHeJ_T0101885.1 MGP_C3HHeJ_G0039850.1 mouse_genomes_project 2 37746792 37753443 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056314.1 MGP_C3HHeJ_G0025974.1 mouse_genomes_project 2 112251015 112251927 - MGP_C3HHeJ_P0056314 Olfr1277 protein_coding protein_coding MGP_C3HHeJ_T0058119.1 MGP_C3HHeJ_G0026429.1 mouse_genomes_project 2 157441481 157455691 + protein_coding retained_intron MGP_C3HHeJ_T0058120.1 MGP_C3HHeJ_G0026429.1 mouse_genomes_project 2 157441481 157459653 + MGP_C3HHeJ_P0058120 protein_coding protein_coding MGP_C3HHeJ_T0058122.1 MGP_C3HHeJ_G0026429.1 mouse_genomes_project 2 157455242 157459653 + protein_coding processed_transcript MGP_C3HHeJ_T0001066.1 MGP_C3HHeJ_G0001002.1 mouse_genomes_project 2 139089432 139089698 + TEC TEC MGP_C3HHeJ_T0010332.1 MGP_C3HHeJ_G0008465.1 mouse_genomes_project 2 64497294 64497399 - Mir6337 miRNA miRNA MGP_C3HHeJ_T0010336.1 MGP_C3HHeJ_G0008469.1 mouse_genomes_project 2 74223361 74223498 - Gm44463 miRNA miRNA MGP_C3HHeJ_T0052837.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23099384 23119222 + MGP_C3HHeJ_P0052837 Abca2 protein_coding protein_coding MGP_C3HHeJ_T0052838.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23111989 23113599 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052839.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23113629 23114495 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052840.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23115843 23117547 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052841.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23116346 23117749 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052842.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23116503 23117224 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0052843.1 MGP_C3HHeJ_G0025180.1 mouse_genomes_project 2 23116524 23117158 + Abca2 protein_coding processed_transcript MGP_C3HHeJ_T0055543.1 MGP_C3HHeJ_G0025780.1 mouse_genomes_project 2 88598309 88599245 + MGP_C3HHeJ_P0055543 Olfr1184 protein_coding protein_coding MGP_C3HHeJ_T0013363.1 MGP_C3HHeJ_G0011467.1 mouse_genomes_project 2 37598541 37598857 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007123.1 MGP_C3HHeJ_G0005836.1 mouse_genomes_project 2 54284946 54299892 + Gm14033 lincRNA lincRNA MGP_C3HHeJ_T0007124.1 MGP_C3HHeJ_G0005836.1 mouse_genomes_project 2 54284971 54311998 + Gm14033 lincRNA lincRNA MGP_C3HHeJ_T0013303.1 MGP_C3HHeJ_G0011407.1 mouse_genomes_project 2 16137585 16137902 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055962.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94143750 94312582 - MGP_C3HHeJ_P0055962 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055963.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94179064 94312601 - MGP_C3HHeJ_P0055963 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055964.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94179546 94188548 - Ext2 protein_coding retained_intron MGP_C3HHeJ_T0055965.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94179560 94312578 - MGP_C3HHeJ_P0055965 Ext2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055966.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94186393 94190752 - MGP_C3HHeJ_P0055966 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055967.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94186976 94187947 - MGP_C3HHeJ_P0055967 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055968.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94199406 94312582 - Ext2 protein_coding processed_transcript MGP_C3HHeJ_T0055969.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94251201 94284412 - Ext2 protein_coding retained_intron MGP_C3HHeJ_T0055970.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94294545 94312598 - MGP_C3HHeJ_P0055970 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055971.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94301545 94312578 - Ext2 protein_coding retained_intron MGP_C3HHeJ_T0055972.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94301970 94312581 - MGP_C3HHeJ_P0055972 Ext2 protein_coding protein_coding MGP_C3HHeJ_T0055973.1 MGP_C3HHeJ_G0025899.1 mouse_genomes_project 2 94302355 94312586 - Ext2 protein_coding processed_transcript MGP_C3HHeJ_T0053692.1 MGP_C3HHeJ_G0025326.1 mouse_genomes_project 2 29851677 29885850 - MGP_C3HHeJ_P0053692 Fibcd1 protein_coding protein_coding MGP_C3HHeJ_T0013359.1 MGP_C3HHeJ_G0011463.1 mouse_genomes_project 2 37105450 37106056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056506.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120366760 120386017 + MGP_C3HHeJ_P0056506 Ivd protein_coding protein_coding MGP_C3HHeJ_T0056507.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120366834 120373462 + Ivd protein_coding retained_intron MGP_C3HHeJ_T0056508.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120374442 120375347 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056509.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120375372 120380047 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056510.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120375850 120377846 + Ivd protein_coding retained_intron MGP_C3HHeJ_T0056511.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120377391 120383637 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056512.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120378783 120384072 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056513.1 MGP_C3HHeJ_G0026045.1 mouse_genomes_project 2 120379520 120380978 + Ivd protein_coding processed_transcript MGP_C3HHeJ_T0056158.1 MGP_C3HHeJ_G0025934.1 mouse_genomes_project 2 104796386 104812323 + MGP_C3HHeJ_P0056158 Cd59b protein_coding protein_coding MGP_C3HHeJ_T0056376.1 MGP_C3HHeJ_G0026014.1 mouse_genomes_project 2 114541250 114558385 + MGP_C3HHeJ_P0056376 Tmco5b protein_coding protein_coding MGP_C3HHeJ_T0007176.1 MGP_C3HHeJ_G0005881.1 mouse_genomes_project 2 92468344 92472726 - 2900072N19Rik lincRNA lincRNA MGP_C3HHeJ_T0010340.1 MGP_C3HHeJ_G0008473.1 mouse_genomes_project 2 76080301 76080404 + Gm23164 miRNA miRNA MGP_C3HHeJ_T0056394.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115373616 115447890 - MGP_C3HHeJ_P0056394 Aqr protein_coding protein_coding MGP_C3HHeJ_T0056395.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115377608 115447828 - MGP_C3HHeJ_P0056395 Aqr protein_coding protein_coding MGP_C3HHeJ_T0056396.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115384567 115391645 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056397.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115405437 115413592 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056398.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115405818 115447797 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056399.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115425102 115447889 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056400.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115430980 115447889 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0056401.1 MGP_C3HHeJ_G0026021.1 mouse_genomes_project 2 115442407 115447967 - Aqr protein_coding processed_transcript MGP_C3HHeJ_T0052769.1 MGP_C3HHeJ_G0025170.1 mouse_genomes_project 2 22938607 22939650 + MGP_C3HHeJ_P0052769 Tmem210 protein_coding protein_coding MGP_C3HHeJ_T0052770.1 MGP_C3HHeJ_G0025170.1 mouse_genomes_project 2 22938663 22939652 + Tmem210 protein_coding processed_transcript MGP_C3HHeJ_T0007090.1 MGP_C3HHeJ_G0005809.1 mouse_genomes_project 2 30625257 30629436 + Gm13412 lincRNA lincRNA MGP_C3HHeJ_T0003845.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23298047 23321484 + Fcnaos antisense antisense MGP_C3HHeJ_T0003846.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23305727 23321484 + Fcnaos antisense antisense MGP_C3HHeJ_T0003847.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23317368 23321485 + Fcnaos antisense antisense MGP_C3HHeJ_T0003848.1 MGP_C3HHeJ_G0003438.1 mouse_genomes_project 2 23320371 23321487 + Fcnaos antisense antisense MGP_C3HHeJ_T0054881.1 MGP_C3HHeJ_G0025543.1 mouse_genomes_project 2 69846383 69849151 + MGP_C3HHeJ_P0054881 Sp5 protein_coding protein_coding MGP_C3HHeJ_T0056315.1 MGP_C3HHeJ_G0025975.1 mouse_genomes_project 2 112267800 112268807 + MGP_C3HHeJ_P0056315 Olfr1278 protein_coding protein_coding MGP_C3HHeJ_T0059522.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185987120 185990158 + MGP_C3HHeJ_P0059522 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059523.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988277 185990671 + MGP_C3HHeJ_P0059523 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059524.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988400 185990597 + Lime1 protein_coding retained_intron MGP_C3HHeJ_T0059525.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988400 185989997 + Lime1 protein_coding retained_intron MGP_C3HHeJ_T0059526.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988400 185990666 + MGP_C3HHeJ_P0059526 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059527.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185988914 185990671 + MGP_C3HHeJ_P0059527 Lime1 protein_coding protein_coding MGP_C3HHeJ_T0059529.1 MGP_C3HHeJ_G0026738.1 mouse_genomes_project 2 185989528 185990356 + Lime1 protein_coding retained_intron MGP_C3HHeJ_T0058904.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168772028 168807326 - MGP_C3HHeJ_P0058904 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058905.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168772031 168807276 - MGP_C3HHeJ_P0058905 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058906.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168772034 168807247 - MGP_C3HHeJ_P0058906 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058907.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168774345 168776328 - Ncoa5 protein_coding retained_intron MGP_C3HHeJ_T0058908.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168781774 168807262 - Ncoa5 protein_coding retained_intron MGP_C3HHeJ_T0058909.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168785688 168807288 - MGP_C3HHeJ_P0058909 Ncoa5 protein_coding protein_coding MGP_C3HHeJ_T0058910.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168795356 168795898 - Ncoa5 protein_coding processed_transcript MGP_C3HHeJ_T0058911.1 MGP_C3HHeJ_G0026603.1 mouse_genomes_project 2 168795626 168807246 - Ncoa5 protein_coding retained_intron MGP_C3HHeJ_T0010268.1 MGP_C3HHeJ_G0008401.1 mouse_genomes_project 2 7699453 7711639 + miRNA miRNA MGP_C3HHeJ_T0013598.1 MGP_C3HHeJ_G0011702.1 mouse_genomes_project 2 128907914 128908763 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100497.1 MGP_C3HHeJ_G0038691.1 mouse_genomes_project 2 154037763 154037899 - snoRNA snoRNA MGP_C3HHeJ_T0101888.1 MGP_C3HHeJ_G0039853.1 mouse_genomes_project 2 85162292 85163188 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057128.1 MGP_C3HHeJ_G0026170.1 mouse_genomes_project 2 129263705 129286186 - MGP_C3HHeJ_P0057128 1810024B03Rik protein_coding protein_coding MGP_C3HHeJ_T0057129.1 MGP_C3HHeJ_G0026170.1 mouse_genomes_project 2 129279912 129286160 - 1810024B03Rik protein_coding processed_transcript MGP_C3HHeJ_T0055834.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92045879 92069605 - MGP_C3HHeJ_P0055834 Atg13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055835.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92045882 92088030 - MGP_C3HHeJ_P0055835 Atg13 protein_coding protein_coding MGP_C3HHeJ_T0055836.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92045883 92087973 - MGP_C3HHeJ_P0055836 Atg13 protein_coding protein_coding MGP_C3HHeJ_T0055837.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92047582 92053420 - Atg13 protein_coding processed_transcript MGP_C3HHeJ_T0055838.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92050642 92056443 - Atg13 protein_coding processed_transcript MGP_C3HHeJ_T0055839.1 MGP_C3HHeJ_G0025876.1 mouse_genomes_project 2 92059912 92083213 - Atg13 protein_coding processed_transcript MGP_C3HHeJ_T0058092.1 MGP_C3HHeJ_G0026418.1 mouse_genomes_project 2 157051491 157071491 + MGP_C3HHeJ_P0058092 Bpifb2 protein_coding protein_coding MGP_C3HHeJ_T0058093.1 MGP_C3HHeJ_G0026418.1 mouse_genomes_project 2 157051521 157052832 + Bpifb2 protein_coding retained_intron MGP_C3HHeJ_T0052594.1 MGP_C3HHeJ_G0025141.1 mouse_genomes_project 2 21903744 21906369 + MGP_C3HHeJ_P0052594 Il1f10 protein_coding protein_coding MGP_C3HHeJ_T0013521.1 MGP_C3HHeJ_G0011625.1 mouse_genomes_project 2 92991101 92991513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100471.1 MGP_C3HHeJ_G0038665.1 mouse_genomes_project 2 97779042 97779171 + Gm22313 snoRNA snoRNA MGP_C3HHeJ_T0003840.1 MGP_C3HHeJ_G0003433.1 mouse_genomes_project 2 18263132 18266991 - Gm13362 antisense antisense MGP_C3HHeJ_T0101874.1 MGP_C3HHeJ_G0039839.1 mouse_genomes_project 2 21866827 21871436 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007047.1 MGP_C3HHeJ_G0005777.1 mouse_genomes_project 2 4148143 4153360 + Gm26565 lincRNA lincRNA MGP_C3HHeJ_T0057345.1 MGP_C3HHeJ_G0026227.1 mouse_genomes_project 2 132755488 132756403 + MGP_C3HHeJ_P0057345 Oxt protein_coding protein_coding MGP_C3HHeJ_T0007132.1 MGP_C3HHeJ_G0005844.1 mouse_genomes_project 2 65311861 65362138 + Gm28638 lincRNA lincRNA MGP_C3HHeJ_T0056318.1 MGP_C3HHeJ_G0025978.1 mouse_genomes_project 2 112363860 112364985 + MGP_C3HHeJ_P0056318 protein_coding protein_coding MGP_C3HHeJ_T0059267.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178749312 178761011 + MGP_C3HHeJ_P0059267 Nelfcd protein_coding protein_coding MGP_C3HHeJ_T0059268.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178749359 178761011 + MGP_C3HHeJ_P0059268 Nelfcd protein_coding protein_coding MGP_C3HHeJ_T0059269.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178749388 178756181 + Nelfcd protein_coding processed_transcript MGP_C3HHeJ_T0059270.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178756900 178758422 + Nelfcd protein_coding retained_intron MGP_C3HHeJ_T0059271.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178758188 178759457 + Nelfcd protein_coding retained_intron MGP_C3HHeJ_T0059272.1 MGP_C3HHeJ_G0026684.1 mouse_genomes_project 2 178759870 178760906 + Nelfcd protein_coding retained_intron MGP_C3HHeJ_T0057793.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150888609 150891682 - MGP_C3HHeJ_P0057793 Foxa2 protein_coding protein_coding MGP_C3HHeJ_T0057794.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150888609 150892703 - MGP_C3HHeJ_P0057794 Foxa2 protein_coding protein_coding MGP_C3HHeJ_T0057795.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150889274 150892630 - MGP_C3HHeJ_P0057795 Foxa2 protein_coding protein_coding MGP_C3HHeJ_T0057796.1 MGP_C3HHeJ_G0026324.1 mouse_genomes_project 2 150889972 150891198 - Foxa2 protein_coding processed_transcript MGP_C3HHeJ_T0098109.1 MGP_C3HHeJ_G0036321.1 mouse_genomes_project 2 119829065 119829159 + Gm22651 rRNA rRNA MGP_C3HHeJ_T0053782.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30440952 30469964 + MGP_C3HHeJ_P0053782 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053783.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30454838 30459236 + Ciz1 protein_coding processed_transcript MGP_C3HHeJ_T0053784.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30454838 30459357 + MGP_C3HHeJ_P0053784 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053785.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30454889 30461951 + MGP_C3HHeJ_P0053785 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053786.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455026 30469964 + MGP_C3HHeJ_P0053786 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053787.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455026 30469970 + MGP_C3HHeJ_P0053787 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053788.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455181 30472640 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053789.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455261 30457680 + Ciz1 protein_coding processed_transcript MGP_C3HHeJ_T0053790.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455382 30462152 + MGP_C3HHeJ_P0053790 Ciz1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053791.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455584 30456816 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053792.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455633 30469970 + MGP_C3HHeJ_P0053792 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053793.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30455638 30469965 + MGP_C3HHeJ_P0053793 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053794.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30457173 30459343 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053795.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30459240 30463122 + MGP_C3HHeJ_P0053795 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053796.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30459300 30464134 + MGP_C3HHeJ_P0053796 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053797.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30461890 30463579 + Ciz1 protein_coding processed_transcript MGP_C3HHeJ_T0053798.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30462737 30467205 + MGP_C3HHeJ_P0053798 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0053799.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30463663 30466223 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053800.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30464145 30466667 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053801.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30465875 30469966 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053802.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30466774 30468057 + Ciz1 protein_coding retained_intron MGP_C3HHeJ_T0053803.1 MGP_C3HHeJ_G0025337.1 mouse_genomes_project 2 30467155 30471896 + MGP_C3HHeJ_P0053803 Ciz1 protein_coding protein_coding MGP_C3HHeJ_T0001021.1 MGP_C3HHeJ_G0000958.1 mouse_genomes_project 2 12361132 12362458 + TEC TEC MGP_C3HHeJ_T0003954.1 MGP_C3HHeJ_G0003515.1 mouse_genomes_project 2 77097426 77117294 + Gm13944 antisense antisense MGP_C3HHeJ_T0003955.1 MGP_C3HHeJ_G0003515.1 mouse_genomes_project 2 77097434 77117639 + Gm13944 antisense antisense MGP_C3HHeJ_T0055561.1 MGP_C3HHeJ_G0025797.1 mouse_genomes_project 2 89056410 89057343 - MGP_C3HHeJ_P0055561 Olfr1209 protein_coding protein_coding MGP_C3HHeJ_T0010258.1 MGP_C3HHeJ_G0008391.1 mouse_genomes_project 2 7691942 7692036 + Mir466f-2 miRNA miRNA MGP_C3HHeJ_T0013615.1 MGP_C3HHeJ_G0011719.1 mouse_genomes_project 2 133693742 133694259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004097.1 MGP_C3HHeJ_G0003617.1 mouse_genomes_project 2 171116355 171117579 + Gm14291 antisense antisense MGP_C3HHeJ_T0058601.1 MGP_C3HHeJ_G0026514.1 mouse_genomes_project 2 162105030 162110012 + MGP_C3HHeJ_P0058601 Slc32a1 protein_coding protein_coding MGP_C3HHeJ_T0055573.1 MGP_C3HHeJ_G0025807.1 mouse_genomes_project 2 89265291 89266227 - MGP_C3HHeJ_P0055573 Olfr1220 protein_coding protein_coding MGP_C3HHeJ_T0056349.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113494379 113588253 + MGP_C3HHeJ_P0056349 protein_coding protein_coding MGP_C3HHeJ_T0056351.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113495288 113585137 + MGP_C3HHeJ_P0056351 protein_coding protein_coding MGP_C3HHeJ_T0056352.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113495364 113592158 + MGP_C3HHeJ_P0056352 protein_coding protein_coding MGP_C3HHeJ_T0056353.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113518120 113592158 + MGP_C3HHeJ_P0056353 protein_coding protein_coding MGP_C3HHeJ_T0056354.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113576009 113580503 + protein_coding processed_transcript MGP_C3HHeJ_T0056355.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113581389 113583112 + protein_coding processed_transcript MGP_C3HHeJ_T0056356.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113583075 113585994 + protein_coding processed_transcript MGP_C3HHeJ_T0056357.1 MGP_C3HHeJ_G0026006.1 mouse_genomes_project 2 113585302 113592165 + protein_coding retained_intron MGP_C3HHeJ_T0054210.1 MGP_C3HHeJ_G0025427.1 mouse_genomes_project 2 35715626 35721046 - MGP_C3HHeJ_P0054210 Zbtb6 protein_coding protein_coding MGP_C3HHeJ_T0054211.1 MGP_C3HHeJ_G0025427.1 mouse_genomes_project 2 35715629 35733286 - MGP_C3HHeJ_P0054211 Zbtb6 protein_coding protein_coding MGP_C3HHeJ_T0057453.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133516699 133571199 - MGP_C3HHeJ_P0057453 Rnf24 protein_coding protein_coding MGP_C3HHeJ_T0057454.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133516700 133532015 - MGP_C3HHeJ_P0057454 Rnf24 protein_coding protein_coding MGP_C3HHeJ_T0057455.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133516702 133548541 - MGP_C3HHeJ_P0057455 Rnf24 protein_coding protein_coding MGP_C3HHeJ_T0057456.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133521696 133571180 - MGP_C3HHeJ_P0057456 Rnf24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057457.1 MGP_C3HHeJ_G0026249.1 mouse_genomes_project 2 133531257 133571210 - Rnf24 protein_coding retained_intron MGP_C3HHeJ_T0098111.1 MGP_C3HHeJ_G0036323.1 mouse_genomes_project 2 122255867 122255992 - n-R5s205 rRNA rRNA MGP_C3HHeJ_T0052564.1 MGP_C3HHeJ_G0025130.1 mouse_genomes_project 2 20646846 20690514 - MGP_C3HHeJ_P0052564 Mastl protein_coding protein_coding MGP_C3HHeJ_T0052565.1 MGP_C3HHeJ_G0025130.1 mouse_genomes_project 2 20670450 20690387 - Mastl protein_coding processed_transcript MGP_C3HHeJ_T0013549.1 MGP_C3HHeJ_G0011653.1 mouse_genomes_project 2 104567172 104567454 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057554.1 MGP_C3HHeJ_G0026270.1 mouse_genomes_project 2 135865027 135876338 + MGP_C3HHeJ_P0057554 Bmp2 protein_coding protein_coding MGP_C3HHeJ_T0004086.1 MGP_C3HHeJ_G0003610.1 mouse_genomes_project 2 167878541 167897528 + A730032A03Rik antisense antisense MGP_C3HHeJ_T0004087.1 MGP_C3HHeJ_G0003610.1 mouse_genomes_project 2 167893732 167897528 + A730032A03Rik antisense antisense MGP_C3HHeJ_T0056294.1 MGP_C3HHeJ_G0025964.1 mouse_genomes_project 2 111216597 111271576 - MGP_C3HHeJ_P0056294 Bbox1 protein_coding protein_coding MGP_C3HHeJ_T0056295.1 MGP_C3HHeJ_G0025964.1 mouse_genomes_project 2 111258862 111281378 - MGP_C3HHeJ_P0056295 Bbox1 protein_coding protein_coding MGP_C3HHeJ_T0052765.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22921908 22936378 + MGP_C3HHeJ_P0052765 Anapc2 protein_coding protein_coding MGP_C3HHeJ_T0052766.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22922025 22927147 + Anapc2 protein_coding processed_transcript MGP_C3HHeJ_T0052767.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22922908 22929181 + MGP_C3HHeJ_P0052767 Anapc2 protein_coding protein_coding MGP_C3HHeJ_T0052768.1 MGP_C3HHeJ_G0025169.1 mouse_genomes_project 2 22929768 22931233 + Anapc2 protein_coding processed_transcript MGP_C3HHeJ_T0010410.1 MGP_C3HHeJ_G0008543.1 mouse_genomes_project 2 185494846 185494914 + Mir124a-3 miRNA miRNA MGP_C3HHeJ_T0007175.1 MGP_C3HHeJ_G0005880.1 mouse_genomes_project 2 92454479 92512656 - lincRNA lincRNA MGP_C3HHeJ_T0058829.1 MGP_C3HHeJ_G0026585.1 mouse_genomes_project 2 168447995 168451946 + MGP_C3HHeJ_P0058829 Spint4 protein_coding protein_coding MGP_C3HHeJ_T0013695.1 MGP_C3HHeJ_G0011799.1 mouse_genomes_project 2 160243608 160243845 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055894.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793522 92799459 - MGP_C3HHeJ_P0055894 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055895.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793522 92799530 - MGP_C3HHeJ_P0055895 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055896.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793523 92799509 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055897.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793527 92799491 - MGP_C3HHeJ_P0055897 Gyltl1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055898.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793528 92799484 - MGP_C3HHeJ_P0055898 Gyltl1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055899.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793536 92799501 - MGP_C3HHeJ_P0055899 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055900.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793536 92800440 - MGP_C3HHeJ_P0055900 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055901.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92793547 92799506 - MGP_C3HHeJ_P0055901 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055902.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92794268 92794998 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055903.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92794451 92795253 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055904.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92795494 92797951 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055905.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92795790 92798138 - Gyltl1b protein_coding processed_transcript MGP_C3HHeJ_T0055906.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92795863 92798546 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055907.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92796545 92799506 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055908.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92798182 92799491 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0055909.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92798407 92803715 - MGP_C3HHeJ_P0055909 Gyltl1b protein_coding protein_coding MGP_C3HHeJ_T0055910.1 MGP_C3HHeJ_G0025885.1 mouse_genomes_project 2 92798457 92800418 - Gyltl1b protein_coding retained_intron MGP_C3HHeJ_T0052720.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22860758 22862203 - Stpg3 protein_coding processed_transcript MGP_C3HHeJ_T0052721.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22860759 22863183 - Stpg3 protein_coding processed_transcript MGP_C3HHeJ_T0052722.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22861110 22863182 - MGP_C3HHeJ_P0052722 Stpg3 protein_coding protein_coding MGP_C3HHeJ_T0052723.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22861313 22863189 - MGP_C3HHeJ_P0052723 Stpg3 protein_coding protein_coding MGP_C3HHeJ_T0052724.1 MGP_C3HHeJ_G0025158.1 mouse_genomes_project 2 22861469 22863143 - Stpg3 protein_coding processed_transcript MGP_C3HHeJ_T0013401.1 MGP_C3HHeJ_G0011505.1 mouse_genomes_project 2 52365034 52365801 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057152.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129418969 129437947 + MGP_C3HHeJ_P0057152 Astl protein_coding protein_coding MGP_C3HHeJ_T0057153.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129421955 129437946 + MGP_C3HHeJ_P0057153 Astl protein_coding protein_coding MGP_C3HHeJ_T0057154.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129421969 129437945 + MGP_C3HHeJ_P0057154 Astl protein_coding protein_coding MGP_C3HHeJ_T0057155.1 MGP_C3HHeJ_G0026176.1 mouse_genomes_project 2 129422243 129430466 + MGP_C3HHeJ_P0057155 Astl protein_coding protein_coding MGP_C3HHeJ_T0053899.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870857 30875640 + MGP_C3HHeJ_P0053899 Tor2a protein_coding protein_coding MGP_C3HHeJ_T0053900.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870868 30875335 + MGP_C3HHeJ_P0053900 Tor2a protein_coding protein_coding MGP_C3HHeJ_T0053901.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870878 30875126 + MGP_C3HHeJ_P0053901 Tor2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053902.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870883 30875640 + MGP_C3HHeJ_P0053902 Tor2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053903.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870899 30875638 + Tor2a protein_coding retained_intron MGP_C3HHeJ_T0053904.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870914 30871607 + Tor2a protein_coding processed_transcript MGP_C3HHeJ_T0053905.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30870942 30874990 + MGP_C3HHeJ_P0053905 Tor2a protein_coding protein_coding MGP_C3HHeJ_T0053906.1 MGP_C3HHeJ_G0025356.1 mouse_genomes_project 2 30873917 30875185 + Tor2a protein_coding retained_intron MGP_C3HHeJ_T0010272.1 MGP_C3HHeJ_G0008405.1 mouse_genomes_project 2 7713024 7713120 + Gm23542 miRNA miRNA MGP_C3HHeJ_T0052360.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 11983989 11986663 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052361.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 11986355 12383652 + MGP_C3HHeJ_P0052361 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052362.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 11987171 12355792 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052363.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12117551 12383651 + Cacnb2 protein_coding processed_transcript MGP_C3HHeJ_T0052364.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12143190 12356626 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052365.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12216057 12367087 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052366.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12216123 12378835 + MGP_C3HHeJ_P0052366 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052367.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12268742 12367002 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052368.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12268743 12367087 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052369.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12268756 12378773 + MGP_C3HHeJ_P0052369 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052370.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269078 12358602 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052371.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269508 12292780 + MGP_C3HHeJ_P0052371 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052372.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269835 12360354 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052373.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12269839 12382840 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0052374.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12355710 12374001 + MGP_C3HHeJ_P0052374 Cacnb2 protein_coding protein_coding MGP_C3HHeJ_T0052375.1 MGP_C3HHeJ_G0025097.1 mouse_genomes_project 2 12374736 12377038 + Cacnb2 protein_coding retained_intron MGP_C3HHeJ_T0100516.1 MGP_C3HHeJ_G0038710.1 mouse_genomes_project 2 172915728 172915857 - Gm25214 snoRNA snoRNA MGP_C3HHeJ_T0053285.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26675253 26682359 + Ddx31 protein_coding processed_transcript MGP_C3HHeJ_T0053286.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26675306 26744173 + MGP_C3HHeJ_P0053286 Ddx31 protein_coding protein_coding MGP_C3HHeJ_T0053287.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26679749 26691075 + Ddx31 protein_coding processed_transcript MGP_C3HHeJ_T0053288.1 MGP_C3HHeJ_G0025267.1 mouse_genomes_project 2 26691984 26694921 + Ddx31 protein_coding processed_transcript MGP_C3HHeJ_T0100505.1 MGP_C3HHeJ_G0038699.1 mouse_genomes_project 2 161828248 161828380 - Gm23925 snoRNA snoRNA MGP_C3HHeJ_T0054831.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69024822 69054364 - MGP_C3HHeJ_P0054831 Fastkd1 protein_coding protein_coding MGP_C3HHeJ_T0054832.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69024944 69054216 - MGP_C3HHeJ_P0054832 Fastkd1 protein_coding protein_coding MGP_C3HHeJ_T0054833.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69043706 69056271 - Fastkd1 protein_coding retained_intron MGP_C3HHeJ_T0054834.1 MGP_C3HHeJ_G0025534.1 mouse_genomes_project 2 69048374 69056289 - Fastkd1 protein_coding retained_intron MGP_C3HHeJ_T0059013.1 MGP_C3HHeJ_G0026621.1 mouse_genomes_project 2 170688584 170785375 + MGP_C3HHeJ_P0059013 Arfgef2 protein_coding protein_coding MGP_C3HHeJ_T0059014.1 MGP_C3HHeJ_G0026621.1 mouse_genomes_project 2 170709823 170732627 + MGP_C3HHeJ_P0059014 Arfgef2 protein_coding protein_coding MGP_C3HHeJ_T0013395.1 MGP_C3HHeJ_G0011499.1 mouse_genomes_project 2 50552253 50552918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100457.1 MGP_C3HHeJ_G0038651.1 mouse_genomes_project 2 56570261 56570412 - Gm25388 snoRNA snoRNA MGP_C3HHeJ_T0013530.1 MGP_C3HHeJ_G0011634.1 mouse_genomes_project 2 97591334 97592735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003945.1 MGP_C3HHeJ_G0003509.1 mouse_genomes_project 2 73176271 73178265 + Chn1os1 antisense antisense MGP_C3HHeJ_T0003933.1 MGP_C3HHeJ_G0003502.1 mouse_genomes_project 2 71707816 71712567 - Rapgef4os3 antisense antisense MGP_C3HHeJ_T0056588.1 MGP_C3HHeJ_G0026068.1 mouse_genomes_project 2 121205311 121215524 - MGP_C3HHeJ_P0056588 Ndufaf1 protein_coding protein_coding MGP_C3HHeJ_T0056589.1 MGP_C3HHeJ_G0026068.1 mouse_genomes_project 2 121211498 121215502 - Ndufaf1 protein_coding processed_transcript MGP_C3HHeJ_T0056590.1 MGP_C3HHeJ_G0026068.1 mouse_genomes_project 2 121211678 121215517 - Ndufaf1 protein_coding processed_transcript MGP_C3HHeJ_T0056056.1 MGP_C3HHeJ_G0025916.1 mouse_genomes_project 2 103000099 103105600 - MGP_C3HHeJ_P0056056 Trim44 protein_coding protein_coding MGP_C3HHeJ_T0056057.1 MGP_C3HHeJ_G0025916.1 mouse_genomes_project 2 103004468 103104957 - MGP_C3HHeJ_P0056057 Trim44 protein_coding protein_coding MGP_C3HHeJ_T0056058.1 MGP_C3HHeJ_G0025916.1 mouse_genomes_project 2 103058672 103113653 - MGP_C3HHeJ_P0056058 Trim44 protein_coding protein_coding MGP_C3HHeJ_T0000999.1 MGP_C3HHeJ_G0000936.1 mouse_genomes_project 2 8622853 8623974 - TEC TEC MGP_C3HHeJ_T0010298.1 MGP_C3HHeJ_G0008431.1 mouse_genomes_project 2 23113460 23113516 + Mir3087 miRNA miRNA MGP_C3HHeJ_T0058418.1 MGP_C3HHeJ_G0026480.1 mouse_genomes_project 2 159632108 159632966 - MGP_C3HHeJ_P0058418 Scand1 protein_coding protein_coding MGP_C3HHeJ_T0007228.1 MGP_C3HHeJ_G0005921.1 mouse_genomes_project 2 119286578 119377677 + 4930412B13Rik lincRNA lincRNA MGP_C3HHeJ_T0059027.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170835652 170896151 - MGP_C3HHeJ_P0059027 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059028.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836250 170843488 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059029.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836250 170896138 - MGP_C3HHeJ_P0059029 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059030.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836250 170895976 - MGP_C3HHeJ_P0059030 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059031.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170836376 170896172 - MGP_C3HHeJ_P0059031 Stau1 protein_coding protein_coding MGP_C3HHeJ_T0059032.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170837349 170839335 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059033.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170837395 170853686 - MGP_C3HHeJ_P0059033 Stau1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059034.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170837797 170839060 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059035.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170840407 170848426 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059036.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170841010 170852411 - Stau1 protein_coding retained_intron MGP_C3HHeJ_T0059037.1 MGP_C3HHeJ_G0026623.1 mouse_genomes_project 2 170852476 170870330 - Stau1 protein_coding processed_transcript MGP_C3HHeJ_T0057005.1 MGP_C3HHeJ_G0026141.1 mouse_genomes_project 2 127016283 127037839 + MGP_C3HHeJ_P0057005 Slc24a5 protein_coding protein_coding MGP_C3HHeJ_T0057006.1 MGP_C3HHeJ_G0026141.1 mouse_genomes_project 2 127017398 127032476 + Slc24a5 protein_coding processed_transcript MGP_C3HHeJ_T0057007.1 MGP_C3HHeJ_G0026141.1 mouse_genomes_project 2 127028939 127032329 + Slc24a5 protein_coding retained_intron MGP_C3HHeJ_T0055483.1 MGP_C3HHeJ_G0025731.1 mouse_genomes_project 2 87408816 87409761 + MGP_C3HHeJ_P0055483 Olfr1120 protein_coding protein_coding MGP_C3HHeJ_T0052936.1 MGP_C3HHeJ_G0025200.1 mouse_genomes_project 2 23388902 23394560 + MGP_C3HHeJ_P0052936 Obp2a protein_coding protein_coding MGP_C3HHeJ_T0056886.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093675 123097772 + MGP_C3HHeJ_P0056886 Serf2 protein_coding protein_coding MGP_C3HHeJ_T0056887.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093848 123097357 + Serf2 protein_coding retained_intron MGP_C3HHeJ_T0056888.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093858 123095790 + MGP_C3HHeJ_P0056888 Serf2 protein_coding protein_coding MGP_C3HHeJ_T0056889.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093863 123095554 + MGP_C3HHeJ_P0056889 Serf2 protein_coding protein_coding MGP_C3HHeJ_T0056890.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093892 123102692 + MGP_C3HHeJ_P0056890 Serf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056891.1 MGP_C3HHeJ_G0026114.1 mouse_genomes_project 2 123093892 123102690 + MGP_C3HHeJ_P0056891 Serf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057989.1 MGP_C3HHeJ_G0026395.1 mouse_genomes_project 2 155838522 155850164 + MGP_C3HHeJ_P0057989 Cox4i2 protein_coding protein_coding MGP_C3HHeJ_T0057990.1 MGP_C3HHeJ_G0026395.1 mouse_genomes_project 2 155839443 155850161 + MGP_C3HHeJ_P0057990 Cox4i2 protein_coding protein_coding MGP_C3HHeJ_T0053329.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514896 27639352 + MGP_C3HHeJ_P0053329 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053330.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514917 27639362 + MGP_C3HHeJ_P0053330 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053331.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514946 27639970 + MGP_C3HHeJ_P0053331 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053332.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27514998 27639361 + MGP_C3HHeJ_P0053332 Rapgef1 protein_coding protein_coding MGP_C3HHeJ_T0053333.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27515727 27637326 + MGP_C3HHeJ_P0053333 Rapgef1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053334.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27629778 27634847 + Rapgef1 protein_coding processed_transcript MGP_C3HHeJ_T0053335.1 MGP_C3HHeJ_G0025274.1 mouse_genomes_project 2 27631558 27633223 + Rapgef1 protein_coding retained_intron MGP_C3HHeJ_T0059088.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171587197 171606160 - MGP_C3HHeJ_P0059088 protein_coding protein_coding MGP_C3HHeJ_T0059089.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171587829 171636484 - protein_coding processed_transcript MGP_C3HHeJ_T0059090.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171588337 171589781 - protein_coding retained_intron MGP_C3HHeJ_T0059091.1 MGP_C3HHeJ_G0026635.1 mouse_genomes_project 2 171598788 171606158 - protein_coding retained_intron MGP_C3HHeJ_T0017579.1 MGP_C3HHeJ_G0015202.1 mouse_genomes_project 2 89277783 89282558 - Gm13764 processed_transcript processed_transcript MGP_C3HHeJ_T0057541.1 MGP_C3HHeJ_G0026266.1 mouse_genomes_project 2 135098116 135127709 + MGP_C3HHeJ_P0057541 Mcm8 protein_coding protein_coding MGP_C3HHeJ_T0057542.1 MGP_C3HHeJ_G0026266.1 mouse_genomes_project 2 135098116 135127408 + MGP_C3HHeJ_P0057542 Mcm8 protein_coding protein_coding MGP_C3HHeJ_T0057543.1 MGP_C3HHeJ_G0026266.1 mouse_genomes_project 2 135098199 135100000 + Mcm8 protein_coding processed_transcript MGP_C3HHeJ_T0001013.1 MGP_C3HHeJ_G0000950.1 mouse_genomes_project 2 11391467 11394066 - TEC TEC MGP_C3HHeJ_T0058765.1 MGP_C3HHeJ_G0026557.1 mouse_genomes_project 2 167899826 167901094 - MGP_C3HHeJ_P0058765 Wfdc15a protein_coding protein_coding MGP_C3HHeJ_T0007344.1 MGP_C3HHeJ_G0006018.1 mouse_genomes_project 2 176494902 176497290 + Gm14275 lincRNA lincRNA MGP_C3HHeJ_T0013381.1 MGP_C3HHeJ_G0011485.1 mouse_genomes_project 2 46907029 46907281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055819.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92014292 92020343 - MGP_C3HHeJ_P0055819 Zfp408 protein_coding protein_coding MGP_C3HHeJ_T0055820.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92014311 92020355 - MGP_C3HHeJ_P0055820 Zfp408 protein_coding protein_coding MGP_C3HHeJ_T0055821.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92016901 92018859 - Zfp408 protein_coding retained_intron MGP_C3HHeJ_T0055822.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92018291 92020323 - MGP_C3HHeJ_P0055822 Zfp408 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055823.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92018639 92020307 - Zfp408 protein_coding processed_transcript MGP_C3HHeJ_T0055824.1 MGP_C3HHeJ_G0025874.1 mouse_genomes_project 2 92019499 92020324 - Zfp408 protein_coding processed_transcript MGP_C3HHeJ_T0056858.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994704 122997031 + MGP_C3HHeJ_P0056858 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056859.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994766 123000705 + MGP_C3HHeJ_P0056859 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056860.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994830 122996768 + MGP_C3HHeJ_P0056860 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056861.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122994897 122997959 + MGP_C3HHeJ_P0056861 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056862.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995602 123000705 + MGP_C3HHeJ_P0056862 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056863.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995648 122997956 + MGP_C3HHeJ_P0056863 Ckmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056864.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995651 122997352 + Ckmt1 protein_coding retained_intron MGP_C3HHeJ_T0056865.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995658 122997598 + MGP_C3HHeJ_P0056865 Ckmt1 protein_coding protein_coding MGP_C3HHeJ_T0056866.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122995836 122997010 + MGP_C3HHeJ_P0056866 Ckmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056867.1 MGP_C3HHeJ_G0026108.1 mouse_genomes_project 2 122999889 123000704 + Ckmt1 protein_coding retained_intron MGP_C3HHeJ_T0055520.1 MGP_C3HHeJ_G0025758.1 mouse_genomes_project 2 87959143 87960194 + MGP_C3HHeJ_P0055520 Olfr1151 protein_coding protein_coding MGP_C3HHeJ_T0010409.1 MGP_C3HHeJ_G0008542.1 mouse_genomes_project 2 184951114 184951218 + Mir133a-2 miRNA miRNA MGP_C3HHeJ_T0013672.1 MGP_C3HHeJ_G0011776.1 mouse_genomes_project 2 155528469 155528777 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013673.1 MGP_C3HHeJ_G0011777.1 mouse_genomes_project 2 155540086 155540569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057961.1 MGP_C3HHeJ_G0026378.1 mouse_genomes_project 2 155483846 155513752 + MGP_C3HHeJ_P0057961 6820408C15Rik protein_coding protein_coding MGP_C3HHeJ_T0057962.1 MGP_C3HHeJ_G0026378.1 mouse_genomes_project 2 155496400 155513751 + MGP_C3HHeJ_P0057962 6820408C15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057963.1 MGP_C3HHeJ_G0026378.1 mouse_genomes_project 2 155496427 155509065 + MGP_C3HHeJ_P0057963 6820408C15Rik protein_coding protein_coding MGP_C3HHeJ_T0055948.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884857 93929643 - MGP_C3HHeJ_P0055948 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055949.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884857 93929734 - MGP_C3HHeJ_P0055949 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055950.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884862 93930178 - MGP_C3HHeJ_P0055950 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055951.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93884900 93886033 - Cd82 protein_coding processed_transcript MGP_C3HHeJ_T0055952.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93885575 93919916 - MGP_C3HHeJ_P0055952 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055953.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93886402 93929618 - MGP_C3HHeJ_P0055953 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055954.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93887572 93919920 - MGP_C3HHeJ_P0055954 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055955.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93887572 93929144 - MGP_C3HHeJ_P0055955 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055956.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93896299 93930372 - MGP_C3HHeJ_P0055956 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0055957.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93899623 93929675 - Cd82 protein_coding processed_transcript MGP_C3HHeJ_T0055958.1 MGP_C3HHeJ_G0025896.1 mouse_genomes_project 2 93903523 93930144 - MGP_C3HHeJ_P0055958 Cd82 protein_coding protein_coding MGP_C3HHeJ_T0059179.1 MGP_C3HHeJ_G0026657.1 mouse_genomes_project 2 176214331 176221562 - MGP_C3HHeJ_P0059179 Cbln4 protein_coding protein_coding MGP_C3HHeJ_T0010387.1 MGP_C3HHeJ_G0008520.1 mouse_genomes_project 2 160980459 160980546 - Gm23134 miRNA miRNA MGP_C3HHeJ_T0054445.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828474 50882707 + MGP_C3HHeJ_P0054445 Rif1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054446.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828526 50878355 + MGP_C3HHeJ_P0054446 Rif1 protein_coding protein_coding MGP_C3HHeJ_T0054447.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828531 50878357 + MGP_C3HHeJ_P0054447 Rif1 protein_coding protein_coding MGP_C3HHeJ_T0054448.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50828761 50831896 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054449.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50845226 50863088 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054450.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50848803 50854049 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054451.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50867009 50878029 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054452.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50867486 50878082 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0054453.1 MGP_C3HHeJ_G0025464.1 mouse_genomes_project 2 50868158 50878355 + Rif1 protein_coding processed_transcript MGP_C3HHeJ_T0101908.1 MGP_C3HHeJ_G0039873.1 mouse_genomes_project 2 87924495 87925432 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056012.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94786575 94895301 - MGP_C3HHeJ_P0056012 Ttc17 protein_coding protein_coding MGP_C3HHeJ_T0056013.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94786577 94895315 - MGP_C3HHeJ_P0056013 Ttc17 protein_coding protein_coding MGP_C3HHeJ_T0056014.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94813427 94895324 - MGP_C3HHeJ_P0056014 Ttc17 protein_coding protein_coding MGP_C3HHeJ_T0056015.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94840405 94849638 - Ttc17 protein_coding processed_transcript MGP_C3HHeJ_T0056016.1 MGP_C3HHeJ_G0025906.1 mouse_genomes_project 2 94866431 94893637 - Ttc17 protein_coding processed_transcript MGP_C3HHeJ_T0053160.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781351 - Slc2a6 protein_coding processed_transcript MGP_C3HHeJ_T0053161.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781375 - Slc2a6 protein_coding processed_transcript MGP_C3HHeJ_T0053162.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781338 - MGP_C3HHeJ_P0053162 Slc2a6 protein_coding protein_coding MGP_C3HHeJ_T0053163.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24773159 24781427 - MGP_C3HHeJ_P0053163 Slc2a6 protein_coding protein_coding MGP_C3HHeJ_T0053164.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24777496 24779420 - Slc2a6 protein_coding processed_transcript MGP_C3HHeJ_T0053165.1 MGP_C3HHeJ_G0025241.1 mouse_genomes_project 2 24779516 24781420 - MGP_C3HHeJ_P0053165 Slc2a6 protein_coding protein_coding MGP_C3HHeJ_T0007171.1 MGP_C3HHeJ_G0005876.1 mouse_genomes_project 2 84249312 84274053 - Gm13710 lincRNA lincRNA MGP_C3HHeJ_T0055547.1 MGP_C3HHeJ_G0025783.1 mouse_genomes_project 2 88663098 88664038 + MGP_C3HHeJ_P0055547 protein_coding protein_coding MGP_C3HHeJ_T0007039.1 MGP_C3HHeJ_G0005771.1 mouse_genomes_project 2 910077 913393 - Gm13191 lincRNA lincRNA MGP_C3HHeJ_T0057035.1 MGP_C3HHeJ_G0026151.1 mouse_genomes_project 2 127641303 127642990 + MGP_C3HHeJ_P0057035 Eid1 protein_coding protein_coding MGP_C3HHeJ_T0007119.1 MGP_C3HHeJ_G0005833.1 mouse_genomes_project 2 50135441 50154683 - 1700057H21Rik lincRNA lincRNA MGP_C3HHeJ_T0007120.1 MGP_C3HHeJ_G0005833.1 mouse_genomes_project 2 50135507 50153836 - 1700057H21Rik lincRNA lincRNA MGP_C3HHeJ_T0055769.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555331 91582409 - Ddb2 protein_coding processed_transcript MGP_C3HHeJ_T0055770.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555347 91583823 - Ddb2 protein_coding processed_transcript MGP_C3HHeJ_T0055771.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555362 91583801 - MGP_C3HHeJ_P0055771 Ddb2 protein_coding protein_coding MGP_C3HHeJ_T0055772.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555380 91583876 - Ddb2 protein_coding processed_transcript MGP_C3HHeJ_T0055773.1 MGP_C3HHeJ_G0025867.1 mouse_genomes_project 2 91555615 91583898 - MGP_C3HHeJ_P0055773 Ddb2 protein_coding protein_coding MGP_C3HHeJ_T0004093.1 MGP_C3HHeJ_G0003613.1 mouse_genomes_project 2 168942419 168946972 + Gm14397 antisense antisense MGP_C3HHeJ_T0100438.1 MGP_C3HHeJ_G0038632.1 mouse_genomes_project 2 24659064 24659138 + Gm22879 snoRNA snoRNA MGP_C3HHeJ_T0059180.1 MGP_C3HHeJ_G0026658.1 mouse_genomes_project 2 176454875 176457494 + MGP_C3HHeJ_P0059180 Mc3r protein_coding protein_coding MGP_C3HHeJ_T0057135.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129320790 129327652 - MGP_C3HHeJ_P0057135 Ciao1 protein_coding protein_coding MGP_C3HHeJ_T0057136.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129322470 129327456 - MGP_C3HHeJ_P0057136 Ciao1 protein_coding protein_coding MGP_C3HHeJ_T0057137.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129322725 129325882 - Ciao1 protein_coding retained_intron MGP_C3HHeJ_T0057138.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129322852 129327456 - MGP_C3HHeJ_P0057138 Ciao1 protein_coding protein_coding MGP_C3HHeJ_T0057139.1 MGP_C3HHeJ_G0026172.1 mouse_genomes_project 2 129325691 129327456 - MGP_C3HHeJ_P0057139 Ciao1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100476.1 MGP_C3HHeJ_G0038670.1 mouse_genomes_project 2 109004999 109005130 - Gm23749 snoRNA snoRNA MGP_C3HHeJ_T0058634.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164299786 164330978 + MGP_C3HHeJ_P0058634 Plcg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058635.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164299796 164344429 + MGP_C3HHeJ_P0058635 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0058636.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164300185 164316364 + MGP_C3HHeJ_P0058636 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0058637.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164300219 164331762 + MGP_C3HHeJ_P0058637 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0058638.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164309462 164330982 + Plcg1 protein_coding processed_transcript MGP_C3HHeJ_T0058640.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164320962 164330631 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058641.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164321027 164327383 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058642.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164322542 164323340 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058643.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164323022 164323645 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058644.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164323047 164327923 + Plcg1 protein_coding processed_transcript MGP_C3HHeJ_T0058645.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164323381 164325623 + Plcg1 protein_coding retained_intron MGP_C3HHeJ_T0058646.1 MGP_C3HHeJ_G0026523.1 mouse_genomes_project 2 164328593 164330693 + MGP_C3HHeJ_P0058646 Plcg1 protein_coding protein_coding MGP_C3HHeJ_T0007188.1 MGP_C3HHeJ_G0005889.1 mouse_genomes_project 2 95878056 95881162 + Gm13794 lincRNA lincRNA MGP_C3HHeJ_T0054793.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140772 68400190 + MGP_C3HHeJ_P0054793 Cers6 protein_coding protein_coding MGP_C3HHeJ_T0054794.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140773 68142056 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054795.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140781 68356286 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054796.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140801 68216592 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054797.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68140917 68394500 + MGP_C3HHeJ_P0054797 Cers6 protein_coding protein_coding MGP_C3HHeJ_T0054798.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68228823 68334902 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0054799.1 MGP_C3HHeJ_G0025525.1 mouse_genomes_project 2 68241474 68335258 + Cers6 protein_coding retained_intron MGP_C3HHeJ_T0056363.1 MGP_C3HHeJ_G0026011.1 mouse_genomes_project 2 113706356 113707955 - MGP_C3HHeJ_P0056363 Chrm5 protein_coding protein_coding MGP_C3HHeJ_T0017684.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162089487 162104923 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0017685.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162092184 162104987 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0017686.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162097017 162104870 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0017687.1 MGP_C3HHeJ_G0015248.1 mouse_genomes_project 2 162097156 162104854 - Gm14204 processed_transcript processed_transcript MGP_C3HHeJ_T0054212.1 MGP_C3HHeJ_G0025428.1 mouse_genomes_project 2 35722292 35733236 - MGP_C3HHeJ_P0054212 Zbtb26 protein_coding protein_coding MGP_C3HHeJ_T0054213.1 MGP_C3HHeJ_G0025428.1 mouse_genomes_project 2 35725142 35733235 - MGP_C3HHeJ_P0054213 Zbtb26 protein_coding protein_coding MGP_C3HHeJ_T0054214.1 MGP_C3HHeJ_G0025428.1 mouse_genomes_project 2 35728593 35733250 - Zbtb26 protein_coding processed_transcript MGP_C3HHeJ_T0058993.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169823198 169903825 + MGP_C3HHeJ_P0058993 Ncoa3 protein_coding protein_coding MGP_C3HHeJ_T0058994.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169823199 169906297 + MGP_C3HHeJ_P0058994 Ncoa3 protein_coding protein_coding MGP_C3HHeJ_T0058995.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169880302 169884762 + Ncoa3 protein_coding processed_transcript MGP_C3HHeJ_T0058996.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169893206 169898569 + Ncoa3 protein_coding retained_intron MGP_C3HHeJ_T0058997.1 MGP_C3HHeJ_G0026618.1 mouse_genomes_project 2 169899809 169902558 + Ncoa3 protein_coding retained_intron MGP_C3HHeJ_T0001015.1 MGP_C3HHeJ_G0000952.1 mouse_genomes_project 2 11539429 11539570 - TEC TEC MGP_C3HHeJ_T0058762.1 MGP_C3HHeJ_G0026555.1 mouse_genomes_project 2 167877284 167883708 - MGP_C3HHeJ_P0058762 Wfdc5 protein_coding protein_coding MGP_C3HHeJ_T0058763.1 MGP_C3HHeJ_G0026555.1 mouse_genomes_project 2 167878424 167883564 - MGP_C3HHeJ_P0058763 Wfdc5 protein_coding protein_coding MGP_C3HHeJ_T0007306.1 MGP_C3HHeJ_G0005987.1 mouse_genomes_project 2 170056489 170057887 - Gm11467 lincRNA lincRNA MGP_C3HHeJ_T0057612.1 MGP_C3HHeJ_G0026281.1 mouse_genomes_project 2 139494599 139531210 - MGP_C3HHeJ_P0057612 Jag1 protein_coding protein_coding MGP_C3HHeJ_T0057613.1 MGP_C3HHeJ_G0026281.1 mouse_genomes_project 2 139495906 139498964 - Jag1 protein_coding retained_intron MGP_C3HHeJ_T0100451.1 MGP_C3HHeJ_G0038645.1 mouse_genomes_project 2 44876440 44876563 + Gm23072 snoRNA snoRNA MGP_C3HHeJ_T0055554.1 MGP_C3HHeJ_G0025790.1 mouse_genomes_project 2 88884345 88885278 - MGP_C3HHeJ_P0055554 Olfr1199 protein_coding protein_coding MGP_C3HHeJ_T0007290.1 MGP_C3HHeJ_G0005971.1 mouse_genomes_project 2 161828247 161828379 - Gm23925 lincRNA lincRNA MGP_C3HHeJ_T0007346.1 MGP_C3HHeJ_G0006020.1 mouse_genomes_project 2 179190448 179201960 - Gm14618 lincRNA lincRNA MGP_C3HHeJ_T0056656.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121746584 121772055 - Pla2g4e protein_coding retained_intron MGP_C3HHeJ_T0056657.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121746584 121824614 - MGP_C3HHeJ_P0056657 Pla2g4e protein_coding protein_coding MGP_C3HHeJ_T0056658.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121752323 121824367 - Pla2g4e protein_coding retained_intron MGP_C3HHeJ_T0056659.1 MGP_C3HHeJ_G0026081.1 mouse_genomes_project 2 121770229 121824393 - Pla2g4e protein_coding processed_transcript MGP_C3HHeJ_T0055288.1 MGP_C3HHeJ_G0025626.1 mouse_genomes_project 2 83712239 83731869 - MGP_C3HHeJ_P0055288 Zswim2 protein_coding protein_coding MGP_C3HHeJ_T0055289.1 MGP_C3HHeJ_G0025626.1 mouse_genomes_project 2 83713929 83731871 - MGP_C3HHeJ_P0055289 Zswim2 protein_coding protein_coding MGP_C3HHeJ_T0055290.1 MGP_C3HHeJ_G0025626.1 mouse_genomes_project 2 83720149 83720590 - Zswim2 protein_coding processed_transcript MGP_C3HHeJ_T0004100.1 MGP_C3HHeJ_G0003620.1 mouse_genomes_project 2 174466404 174490313 + Bcas1os2 antisense antisense MGP_C3HHeJ_T0055538.1 MGP_C3HHeJ_G0025775.1 mouse_genomes_project 2 88494596 88495568 + MGP_C3HHeJ_P0055538 Olfr1178 protein_coding protein_coding MGP_C3HHeJ_T0099175.1 MGP_C3HHeJ_G0037369.1 mouse_genomes_project 2 8318852 8318985 - Gm26478 snRNA snRNA MGP_C3HHeJ_T0007096.1 MGP_C3HHeJ_G0005814.1 mouse_genomes_project 2 32194350 32284731 - C230014O12Rik lincRNA lincRNA MGP_C3HHeJ_T0007098.1 MGP_C3HHeJ_G0005814.1 mouse_genomes_project 2 32277045 32284737 - C230014O12Rik lincRNA lincRNA MGP_C3HHeJ_T0056958.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124075823 124093945 - MGP_C3HHeJ_P0056958 protein_coding protein_coding MGP_C3HHeJ_T0056959.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124075824 124096038 - MGP_C3HHeJ_P0056959 protein_coding protein_coding MGP_C3HHeJ_T0056960.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076059 124095952 - MGP_C3HHeJ_P0056960 protein_coding protein_coding MGP_C3HHeJ_T0056961.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076059 124096282 - MGP_C3HHeJ_P0056961 protein_coding protein_coding MGP_C3HHeJ_T0056962.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076059 124086570 - MGP_C3HHeJ_P0056962 protein_coding protein_coding MGP_C3HHeJ_T0056963.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076130 124085221 - MGP_C3HHeJ_P0056963 protein_coding protein_coding MGP_C3HHeJ_T0056964.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076130 124085247 - MGP_C3HHeJ_P0056964 protein_coding protein_coding MGP_C3HHeJ_T0056965.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076284 124096252 - MGP_C3HHeJ_P0056965 protein_coding protein_coding MGP_C3HHeJ_T0056966.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076319 124084201 - MGP_C3HHeJ_P0056966 protein_coding protein_coding MGP_C3HHeJ_T0056967.1 MGP_C3HHeJ_G0026133.1 mouse_genomes_project 2 124076435 124081103 - protein_coding retained_intron MGP_C3HHeJ_T0057778.1 MGP_C3HHeJ_G0026319.1 mouse_genomes_project 2 149653628 149771470 + MGP_C3HHeJ_P0057778 Kiz protein_coding protein_coding MGP_C3HHeJ_T0057779.1 MGP_C3HHeJ_G0026319.1 mouse_genomes_project 2 149653673 149688113 + MGP_C3HHeJ_P0057779 Kiz protein_coding protein_coding MGP_C3HHeJ_T0057780.1 MGP_C3HHeJ_G0026319.1 mouse_genomes_project 2 149753149 149771465 + Kiz protein_coding retained_intron MGP_C3HHeJ_T0001023.1 MGP_C3HHeJ_G0000960.1 mouse_genomes_project 2 12463570 12466331 + TEC TEC MGP_C3HHeJ_T0054847.1 MGP_C3HHeJ_G0025536.1 mouse_genomes_project 2 69104596 69139590 - MGP_C3HHeJ_P0054847 Ccdc173 protein_coding protein_coding MGP_C3HHeJ_T0054848.1 MGP_C3HHeJ_G0025536.1 mouse_genomes_project 2 69129505 69130563 - Ccdc173 protein_coding processed_transcript MGP_C3HHeJ_T0001038.1 MGP_C3HHeJ_G0000975.1 mouse_genomes_project 2 36320837 36324787 - TEC TEC MGP_C3HHeJ_T0055728.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521696 - MGP_C3HHeJ_P0055728 Madd protein_coding protein_coding MGP_C3HHeJ_T0055729.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055729 Madd protein_coding protein_coding MGP_C3HHeJ_T0055730.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055730 Madd protein_coding protein_coding MGP_C3HHeJ_T0055731.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055731 Madd protein_coding protein_coding MGP_C3HHeJ_T0055732.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521698 - MGP_C3HHeJ_P0055732 Madd protein_coding protein_coding MGP_C3HHeJ_T0055733.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91525227 - MGP_C3HHeJ_P0055733 Madd protein_coding protein_coding MGP_C3HHeJ_T0055734.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521702 - MGP_C3HHeJ_P0055734 Madd protein_coding protein_coding MGP_C3HHeJ_T0055735.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055735 Madd protein_coding protein_coding MGP_C3HHeJ_T0055736.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91521707 - MGP_C3HHeJ_P0055736 Madd protein_coding protein_coding MGP_C3HHeJ_T0055737.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91525268 - MGP_C3HHeJ_P0055737 Madd protein_coding protein_coding MGP_C3HHeJ_T0055738.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91526199 - MGP_C3HHeJ_P0055738 Madd protein_coding protein_coding MGP_C3HHeJ_T0055739.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478523 91525267 - MGP_C3HHeJ_P0055739 Madd protein_coding protein_coding MGP_C3HHeJ_T0055740.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055741.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055742.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055743.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055744.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0055745.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91478524 91526199 - MGP_C3HHeJ_P0055745 Madd protein_coding protein_coding MGP_C3HHeJ_T0055746.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91479513 91480420 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055747.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91484191 91497437 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055748.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91484420 91494977 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055749.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91494632 91497281 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055750.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91498043 91502843 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055751.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91503531 91525405 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055752.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91503878 91525426 - MGP_C3HHeJ_P0055752 Madd protein_coding protein_coding MGP_C3HHeJ_T0055753.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91510301 91518206 - MGP_C3HHeJ_P0055753 Madd protein_coding protein_coding MGP_C3HHeJ_T0055754.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91520017 91526218 - Madd protein_coding retained_intron MGP_C3HHeJ_T0055755.1 MGP_C3HHeJ_G0025864.1 mouse_genomes_project 2 91520829 91525418 - Madd protein_coding processed_transcript MGP_C3HHeJ_T0053239.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26335514 26365314 + MGP_C3HHeJ_P0053239 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053240.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26335715 26377526 + MGP_C3HHeJ_P0053240 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053241.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355746 26377511 + MGP_C3HHeJ_P0053241 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053242.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355933 26377081 + MGP_C3HHeJ_P0053242 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0053243.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355940 26377515 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053244.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26355942 26377523 + MGP_C3HHeJ_P0053244 Ralgds protein_coding unknown_likely_coding MGP_C3HHeJ_T0053245.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26363089 26365266 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053246.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26364696 26369521 + MGP_C3HHeJ_P0053246 Ralgds protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053247.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26369737 26371665 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053248.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26371994 26373421 + Ralgds protein_coding retained_intron MGP_C3HHeJ_T0053249.1 MGP_C3HHeJ_G0025259.1 mouse_genomes_project 2 26373502 26376770 + MGP_C3HHeJ_P0053249 Ralgds protein_coding protein_coding MGP_C3HHeJ_T0055591.1 MGP_C3HHeJ_G0025821.1 mouse_genomes_project 2 89568478 89569426 - MGP_C3HHeJ_P0055591 Olfr1238 protein_coding protein_coding MGP_C3HHeJ_T0013497.1 MGP_C3HHeJ_G0011601.1 mouse_genomes_project 2 87121491 87122026 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013611.1 MGP_C3HHeJ_G0011715.1 mouse_genomes_project 2 133196346 133196964 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056302.1 MGP_C3HHeJ_G0025967.1 mouse_genomes_project 2 111613264 111921888 - MGP_C3HHeJ_P0056302 Ano3 protein_coding protein_coding MGP_C3HHeJ_T0056303.1 MGP_C3HHeJ_G0025967.1 mouse_genomes_project 2 111646760 111921338 - Ano3 protein_coding retained_intron MGP_C3HHeJ_T0056304.1 MGP_C3HHeJ_G0025967.1 mouse_genomes_project 2 111670406 111721127 - MGP_C3HHeJ_P0056304 Ano3 protein_coding protein_coding MGP_C3HHeJ_T0007238.1 MGP_C3HHeJ_G0005929.1 mouse_genomes_project 2 127238895 127240185 - Gm14003 lincRNA lincRNA MGP_C3HHeJ_T0003965.1 MGP_C3HHeJ_G0003523.1 mouse_genomes_project 2 102728085 102755913 + Gm13919 antisense antisense MGP_C3HHeJ_T0003966.1 MGP_C3HHeJ_G0003523.1 mouse_genomes_project 2 102728093 102730722 + Gm13919 antisense antisense MGP_C3HHeJ_T0057829.1 MGP_C3HHeJ_G0026342.1 mouse_genomes_project 2 152714393 152715083 - MGP_C3HHeJ_P0057829 C530025M09Rik protein_coding protein_coding MGP_C3HHeJ_T0055480.1 MGP_C3HHeJ_G0025728.1 mouse_genomes_project 2 87224477 87242984 + MGP_C3HHeJ_P0055480 Olfr1113 protein_coding protein_coding MGP_C3HHeJ_T0013579.1 MGP_C3HHeJ_G0011683.1 mouse_genomes_project 2 113621322 113621622 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055368.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684123 84685360 + MGP_C3HHeJ_P0055368 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055369.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684161 84685859 + MGP_C3HHeJ_P0055369 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055370.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684190 84692099 + MGP_C3HHeJ_P0055370 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055371.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684208 84705844 + MGP_C3HHeJ_P0055371 Slc43a3 protein_coding protein_coding MGP_C3HHeJ_T0055372.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684233 84685207 + Slc43a3 protein_coding processed_transcript MGP_C3HHeJ_T0055373.1 MGP_C3HHeJ_G0025646.1 mouse_genomes_project 2 84684415 84695647 + Slc43a3 protein_coding retained_intron MGP_C3HHeJ_T0055537.1 MGP_C3HHeJ_G0025774.1 mouse_genomes_project 2 88448414 88449362 + MGP_C3HHeJ_P0055537 Olfr1176 protein_coding protein_coding MGP_C3HHeJ_T0059193.1 MGP_C3HHeJ_G0026664.1 mouse_genomes_project 2 176664420 176672683 - MGP_C3HHeJ_P0059193 Gcnt7 protein_coding protein_coding MGP_C3HHeJ_T0059194.1 MGP_C3HHeJ_G0026664.1 mouse_genomes_project 2 176664421 176668841 - MGP_C3HHeJ_P0059194 Gcnt7 protein_coding protein_coding MGP_C3HHeJ_T0100430.1 MGP_C3HHeJ_G0038624.1 mouse_genomes_project 2 17216777 17216909 + Gm24670 snoRNA snoRNA MGP_C3HHeJ_T0057174.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129662873 129675083 - MGP_C3HHeJ_P0057174 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0057175.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129663717 129672653 - MGP_C3HHeJ_P0057175 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0057176.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129663724 129672661 - MGP_C3HHeJ_P0057176 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0057177.1 MGP_C3HHeJ_G0026182.1 mouse_genomes_project 2 129665124 129669500 - MGP_C3HHeJ_P0057177 Zfp661 protein_coding protein_coding MGP_C3HHeJ_T0013730.1 MGP_C3HHeJ_G0011834.1 mouse_genomes_project 2 181687655 181688052 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011393.1 MGP_C3HHeJ_G0009526.1 mouse_genomes_project 2 18100837 18100926 + Gm27446 misc_RNA misc_RNA MGP_C3HHeJ_T0017610.1 MGP_C3HHeJ_G0015217.1 mouse_genomes_project 2 115283931 115340805 + A530058N18Rik processed_transcript antisense MGP_C3HHeJ_T0017611.1 MGP_C3HHeJ_G0015217.1 mouse_genomes_project 2 115283935 115332685 + A530058N18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017569.1 MGP_C3HHeJ_G0015193.1 mouse_genomes_project 2 75269218 75274494 + E030042O20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0004070.1 MGP_C3HHeJ_G0003598.1 mouse_genomes_project 2 161514289 161538095 - 2010009K17Rik antisense antisense MGP_C3HHeJ_T0010267.1 MGP_C3HHeJ_G0008400.1 mouse_genomes_project 2 7699171 7699273 + Gm24342 miRNA miRNA MGP_C3HHeJ_T0013554.1 MGP_C3HHeJ_G0011658.1 mouse_genomes_project 2 105596240 105597423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013487.1 MGP_C3HHeJ_G0011591.1 mouse_genomes_project 2 83220608 83221092 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017563.1 MGP_C3HHeJ_G0015188.1 mouse_genomes_project 2 69398896 69402391 + Gm13631 processed_transcript processed_transcript MGP_C3HHeJ_T0099212.1 MGP_C3HHeJ_G0037406.1 mouse_genomes_project 2 128099182 128099269 - Gm26496 snRNA snRNA MGP_C3HHeJ_T0010317.1 MGP_C3HHeJ_G0008450.1 mouse_genomes_project 2 30778685 30778750 + miRNA miRNA MGP_C3HHeJ_T0057198.1 MGP_C3HHeJ_G0026189.1 mouse_genomes_project 2 129919589 129960790 + Acoxl protein_coding processed_transcript MGP_C3HHeJ_T0057199.1 MGP_C3HHeJ_G0026189.1 mouse_genomes_project 2 129935217 130225622 + MGP_C3HHeJ_P0057199 Acoxl protein_coding protein_coding MGP_C3HHeJ_T0057200.1 MGP_C3HHeJ_G0026189.1 mouse_genomes_project 2 129997052 130225257 + MGP_C3HHeJ_P0057200 Acoxl protein_coding protein_coding MGP_C3HHeJ_T0007206.1 MGP_C3HHeJ_G0005904.1 mouse_genomes_project 2 109119084 109229111 - Gm13912 lincRNA lincRNA MGP_C3HHeJ_T0017557.1 MGP_C3HHeJ_G0015184.1 mouse_genomes_project 2 56114815 56117097 - A930012O16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017558.1 MGP_C3HHeJ_G0015184.1 mouse_genomes_project 2 56114815 56117097 - A930012O16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017692.1 MGP_C3HHeJ_G0015253.1 mouse_genomes_project 2 171101527 171106056 + 1110018N20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017693.1 MGP_C3HHeJ_G0015253.1 mouse_genomes_project 2 171101737 171106322 + 1110018N20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017694.1 MGP_C3HHeJ_G0015253.1 mouse_genomes_project 2 171102272 171106605 + 1110018N20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0054030.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32985128 33009860 - MGP_C3HHeJ_P0054030 Rabepk protein_coding protein_coding MGP_C3HHeJ_T0054031.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32986458 33009710 - MGP_C3HHeJ_P0054031 Rabepk protein_coding protein_coding MGP_C3HHeJ_T0054032.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32986669 33003927 - MGP_C3HHeJ_P0054032 Rabepk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054033.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32992641 33009956 - MGP_C3HHeJ_P0054033 Rabepk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054034.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32993033 33009993 - MGP_C3HHeJ_P0054034 Rabepk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054035.1 MGP_C3HHeJ_G0025375.1 mouse_genomes_project 2 32993505 33009846 - Rabepk protein_coding retained_intron MGP_C3HHeJ_T0052407.1 MGP_C3HHeJ_G0025104.1 mouse_genomes_project 2 15474821 15487349 - MGP_C3HHeJ_P0052407 A930004D18Rik protein_coding protein_coding MGP_C3HHeJ_T0052408.1 MGP_C3HHeJ_G0025104.1 mouse_genomes_project 2 15477554 15478389 - A930004D18Rik protein_coding processed_transcript MGP_C3HHeJ_T0052409.1 MGP_C3HHeJ_G0025104.1 mouse_genomes_project 2 15477602 15478500 - A930004D18Rik protein_coding processed_transcript MGP_C3HHeJ_T0007215.1 MGP_C3HHeJ_G0005913.1 mouse_genomes_project 2 116839848 116858484 - 3110099E03Rik lincRNA lincRNA MGP_C3HHeJ_T0007216.1 MGP_C3HHeJ_G0005913.1 mouse_genomes_project 2 116841366 116874581 - 3110099E03Rik lincRNA lincRNA MGP_C3HHeJ_T0007217.1 MGP_C3HHeJ_G0005913.1 mouse_genomes_project 2 116842073 116858490 - 3110099E03Rik lincRNA lincRNA MGP_C3HHeJ_T0007235.1 MGP_C3HHeJ_G0005926.1 mouse_genomes_project 2 126048942 126059124 - 4930517E11Rik lincRNA lincRNA MGP_C3HHeJ_T0055443.1 MGP_C3HHeJ_G0025693.1 mouse_genomes_project 2 86179014 86179953 + MGP_C3HHeJ_P0055443 Olfr1052 protein_coding protein_coding MGP_C3HHeJ_T0052119.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2906749 2930964 - MGP_C3HHeJ_P0052119 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052120.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2906791 2930866 - MGP_C3HHeJ_P0052120 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052121.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2907357 2912231 - MGP_C3HHeJ_P0052121 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052122.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2907755 2910559 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052123.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2909173 2910053 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052124.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2909560 2912795 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052125.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2912176 2913762 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052126.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2912244 2914143 - Sec61a2 protein_coding processed_transcript MGP_C3HHeJ_T0052127.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2913626 2930851 - MGP_C3HHeJ_P0052127 Sec61a2 protein_coding protein_coding MGP_C3HHeJ_T0052128.1 MGP_C3HHeJ_G0025059.1 mouse_genomes_project 2 2917619 2930866 - Sec61a2 protein_coding retained_intron MGP_C3HHeJ_T0057413.1 MGP_C3HHeJ_G0026240.1 mouse_genomes_project 2 133339759 133359834 + MGP_C3HHeJ_P0057413 Hspa12b protein_coding protein_coding MGP_C3HHeJ_T0057414.1 MGP_C3HHeJ_G0026240.1 mouse_genomes_project 2 133339921 133350857 + MGP_C3HHeJ_P0057414 Hspa12b protein_coding protein_coding MGP_C3HHeJ_T0057415.1 MGP_C3HHeJ_G0026240.1 mouse_genomes_project 2 133339973 133358740 + MGP_C3HHeJ_P0057415 Hspa12b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007100.1 MGP_C3HHeJ_G0005817.1 mouse_genomes_project 2 33746978 33749453 + Gm35202 lincRNA lincRNA MGP_C3HHeJ_T0010289.1 MGP_C3HHeJ_G0008422.1 mouse_genomes_project 2 14378551 14378661 - Gm24933 miRNA miRNA MGP_C3HHeJ_T0003837.1 MGP_C3HHeJ_G0003430.1 mouse_genomes_project 2 17155740 17158693 - Gm13348 antisense antisense MGP_C3HHeJ_T0054822.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68980967 69002348 + MGP_C3HHeJ_P0054822 Bbs5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054823.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981004 69002601 + MGP_C3HHeJ_P0054823 Bbs5 protein_coding protein_coding MGP_C3HHeJ_T0054824.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981012 69002601 + MGP_C3HHeJ_P0054824 Bbs5 protein_coding protein_coding MGP_C3HHeJ_T0054825.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981026 68984550 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054826.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981049 68989222 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054827.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68981059 68988064 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054828.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68990397 69000058 + Bbs5 protein_coding retained_intron MGP_C3HHeJ_T0054829.1 MGP_C3HHeJ_G0025532.1 mouse_genomes_project 2 68992252 69002601 + MGP_C3HHeJ_P0054829 Bbs5 protein_coding protein_coding MGP_C3HHeJ_T0003836.1 MGP_C3HHeJ_G0003429.1 mouse_genomes_project 2 16954008 16959096 - Ptf1aos antisense antisense MGP_C3HHeJ_T0013669.1 MGP_C3HHeJ_G0011773.1 mouse_genomes_project 2 153955996 153956779 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054147.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34373705 - MGP_C3HHeJ_P0054147 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054148.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34373705 - MGP_C3HHeJ_P0054148 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054149.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34375052 - MGP_C3HHeJ_P0054149 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054150.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351562 34374915 - MGP_C3HHeJ_P0054150 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054151.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34351563 34375052 - MGP_C3HHeJ_P0054151 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054152.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34353294 34363884 - MGP_C3HHeJ_P0054152 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054153.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34353297 34374535 - MGP_C3HHeJ_P0054153 Lhx6 protein_coding protein_coding MGP_C3HHeJ_T0054154.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34363835 34373237 - Lhx6 protein_coding retained_intron MGP_C3HHeJ_T0054155.1 MGP_C3HHeJ_G0025394.1 mouse_genomes_project 2 34370941 34374899 - Lhx6 protein_coding processed_transcript MGP_C3HHeJ_T0007226.1 MGP_C3HHeJ_G0005919.1 mouse_genomes_project 2 119267279 119268807 - Gm28183 lincRNA lincRNA MGP_C3HHeJ_T0058860.1 MGP_C3HHeJ_G0026596.1 mouse_genomes_project 2 168591265 168595136 - MGP_C3HHeJ_P0058860 Neurl2 protein_coding protein_coding MGP_C3HHeJ_T0058407.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515542 159571498 + MGP_C3HHeJ_P0058407 Phf20 protein_coding protein_coding MGP_C3HHeJ_T0058408.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515718 159626396 + MGP_C3HHeJ_P0058408 Phf20 protein_coding protein_coding MGP_C3HHeJ_T0058409.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515810 159630005 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058410.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515830 159540715 + Phf20 protein_coding retained_intron MGP_C3HHeJ_T0058411.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159515832 159571700 + Phf20 protein_coding retained_intron MGP_C3HHeJ_T0058412.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159539680 159569013 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058413.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159580353 159591075 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058414.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159600446 159610258 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058415.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159611478 159616338 + Phf20 protein_coding retained_intron MGP_C3HHeJ_T0058416.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159613762 159616430 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0058417.1 MGP_C3HHeJ_G0026479.1 mouse_genomes_project 2 159614139 159622071 + Phf20 protein_coding processed_transcript MGP_C3HHeJ_T0013633.1 MGP_C3HHeJ_G0011737.1 mouse_genomes_project 2 142671694 142672075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055926.1 MGP_C3HHeJ_G0025890.1 mouse_genomes_project 2 92881281 92888665 - MGP_C3HHeJ_P0055926 Slc35c1 protein_coding protein_coding MGP_C3HHeJ_T0055927.1 MGP_C3HHeJ_G0025890.1 mouse_genomes_project 2 92881284 92889409 - MGP_C3HHeJ_P0055927 Slc35c1 protein_coding protein_coding MGP_C3HHeJ_T0055928.1 MGP_C3HHeJ_G0025890.1 mouse_genomes_project 2 92887556 92888580 - MGP_C3HHeJ_P0055928 Slc35c1 protein_coding protein_coding MGP_C3HHeJ_T0013428.1 MGP_C3HHeJ_G0011532.1 mouse_genomes_project 2 60712713 60713412 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099202.1 MGP_C3HHeJ_G0037396.1 mouse_genomes_project 2 84447652 84447753 + Gm27942 snRNA snRNA MGP_C3HHeJ_T0013280.1 MGP_C3HHeJ_G0011384.1 mouse_genomes_project 2 8179102 8179940 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017638.1 MGP_C3HHeJ_G0015227.1 mouse_genomes_project 2 127074041 127085706 - Gm14004 processed_transcript processed_transcript MGP_C3HHeJ_T0011406.1 MGP_C3HHeJ_G0009539.1 mouse_genomes_project 2 67759978 67760220 + Gm26321 misc_RNA misc_RNA MGP_C3HHeJ_T0101895.1 MGP_C3HHeJ_G0039860.1 mouse_genomes_project 2 85731526 85732868 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007104.1 MGP_C3HHeJ_G0005819.1 mouse_genomes_project 2 35378366 35379243 - Gm13434 lincRNA lincRNA MGP_C3HHeJ_T0003960.1 MGP_C3HHeJ_G0003519.1 mouse_genomes_project 2 84942865 84944611 + Gm13716 antisense antisense MGP_C3HHeJ_T0058259.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 158993526 159021126 - MGP_C3HHeJ_P0058259 Edem2 protein_coding protein_coding MGP_C3HHeJ_T0058260.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 158997572 159005201 - Edem2 protein_coding processed_transcript MGP_C3HHeJ_T0058261.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 159000405 159002875 - Edem2 protein_coding retained_intron MGP_C3HHeJ_T0058262.1 MGP_C3HHeJ_G0026458.1 mouse_genomes_project 2 159000888 159008263 - Edem2 protein_coding retained_intron MGP_C3HHeJ_T0058166.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024324 158101539 + MGP_C3HHeJ_P0058166 Raly protein_coding protein_coding MGP_C3HHeJ_T0058167.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024334 158098013 + MGP_C3HHeJ_P0058167 Raly protein_coding protein_coding MGP_C3HHeJ_T0058168.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024338 158101555 + MGP_C3HHeJ_P0058168 Raly protein_coding protein_coding MGP_C3HHeJ_T0058169.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024346 158096113 + MGP_C3HHeJ_P0058169 Raly protein_coding protein_coding MGP_C3HHeJ_T0058170.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024361 158101538 + MGP_C3HHeJ_P0058170 Raly protein_coding protein_coding MGP_C3HHeJ_T0058171.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024385 158101555 + MGP_C3HHeJ_P0058171 Raly protein_coding protein_coding MGP_C3HHeJ_T0058172.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024580 158098226 + MGP_C3HHeJ_P0058172 Raly protein_coding protein_coding MGP_C3HHeJ_T0058173.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024582 158082648 + Raly protein_coding processed_transcript MGP_C3HHeJ_T0058174.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024597 158091541 + Raly protein_coding processed_transcript MGP_C3HHeJ_T0058176.1 MGP_C3HHeJ_G0026443.1 mouse_genomes_project 2 158024941 158091654 + Raly protein_coding processed_transcript MGP_C3HHeJ_T0013445.1 MGP_C3HHeJ_G0011549.1 mouse_genomes_project 2 69149893 69150994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013420.1 MGP_C3HHeJ_G0011524.1 mouse_genomes_project 2 58315893 58316689 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053289.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26746282 26754998 - MGP_C3HHeJ_P0053289 Barhl1 protein_coding protein_coding MGP_C3HHeJ_T0053290.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26746287 26751099 - Barhl1 protein_coding processed_transcript MGP_C3HHeJ_T0053291.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26747572 26755017 - MGP_C3HHeJ_P0053291 Barhl1 protein_coding protein_coding MGP_C3HHeJ_T0053292.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26747572 26755239 - MGP_C3HHeJ_P0053292 Barhl1 protein_coding protein_coding MGP_C3HHeJ_T0053293.1 MGP_C3HHeJ_G0025268.1 mouse_genomes_project 2 26748243 26754091 - Barhl1 protein_coding processed_transcript MGP_C3HHeJ_T0099188.1 MGP_C3HHeJ_G0037382.1 mouse_genomes_project 2 36799258 36799366 + Gm25081 snRNA snRNA MGP_C3HHeJ_T0055211.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79020081 79028185 - MGP_C3HHeJ_P0055211 Cerkl protein_coding protein_coding MGP_C3HHeJ_T0055212.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79021290 79122210 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055213.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022040 79023265 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055214.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022068 79122147 - MGP_C3HHeJ_P0055214 Cerkl protein_coding protein_coding MGP_C3HHeJ_T0055215.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022113 79122147 - MGP_C3HHeJ_P0055215 Cerkl protein_coding unknown_likely_coding MGP_C3HHeJ_T0055216.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022131 79122163 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055217.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022131 79122147 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055218.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79022133 79122253 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055219.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79028150 79148186 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055220.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79033103 79061746 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055221.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79044695 79061771 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055222.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79078855 79082481 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0055223.1 MGP_C3HHeJ_G0025609.1 mouse_genomes_project 2 79080189 79084366 - Cerkl protein_coding processed_transcript MGP_C3HHeJ_T0052033.1 MGP_C3HHeJ_G0025044.1 mouse_genomes_project 2 531021 531372 + MGP_C3HHeJ_P0052033 protein_coding protein_coding MGP_C3HHeJ_T0055419.1 MGP_C3HHeJ_G0025670.1 mouse_genomes_project 2 85615205 85616141 + MGP_C3HHeJ_P0055419 Olfr1018 protein_coding protein_coding MGP_C3HHeJ_T0054542.1 MGP_C3HHeJ_G0025485.1 mouse_genomes_project 2 57820237 57866646 + MGP_C3HHeJ_P0054542 Gm11099 protein_coding protein_coding MGP_C3HHeJ_T0013301.1 MGP_C3HHeJ_G0011405.1 mouse_genomes_project 2 15810681 15811092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058843.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542343 168548979 + MGP_C3HHeJ_P0058843 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058844.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542511 168550302 + MGP_C3HHeJ_P0058844 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058845.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542511 168549544 + MGP_C3HHeJ_P0058845 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058846.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168542537 168544133 + MGP_C3HHeJ_P0058846 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058847.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168543294 168549116 + MGP_C3HHeJ_P0058847 Snx21 protein_coding protein_coding MGP_C3HHeJ_T0058848.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168546902 168550308 + Snx21 protein_coding retained_intron MGP_C3HHeJ_T0058849.1 MGP_C3HHeJ_G0026591.1 mouse_genomes_project 2 168548143 168550300 + Snx21 protein_coding processed_transcript MGP_C3HHeJ_T0056977.1 MGP_C3HHeJ_G0026137.1 mouse_genomes_project 2 124515770 124539698 - MGP_C3HHeJ_P0056977 Slc30a4 protein_coding protein_coding MGP_C3HHeJ_T0056978.1 MGP_C3HHeJ_G0026137.1 mouse_genomes_project 2 124518798 124539722 - MGP_C3HHeJ_P0056978 Slc30a4 protein_coding protein_coding MGP_C3HHeJ_T0101520.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147181782 147190260 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101521.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147186860 147223292 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101522.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147186925 147189191 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101523.1 MGP_C3HHeJ_G0039499.1 mouse_genomes_project 2 147187641 147189198 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0052070.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1883812 1920301 + MGP_C3HHeJ_P0052070 Sephs1 protein_coding protein_coding MGP_C3HHeJ_T0052071.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1884483 1917881 + MGP_C3HHeJ_P0052071 Sephs1 protein_coding protein_coding MGP_C3HHeJ_T0052072.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1886295 1891540 + Sephs1 protein_coding processed_transcript MGP_C3HHeJ_T0052073.1 MGP_C3HHeJ_G0025049.1 mouse_genomes_project 2 1886622 1915277 + Sephs1 protein_coding processed_transcript MGP_C3HHeJ_T0054176.1 MGP_C3HHeJ_G0025405.1 mouse_genomes_project 2 34960560 34961490 + MGP_C3HHeJ_P0054176 Olfr346 protein_coding protein_coding MGP_C3HHeJ_T0057285.1 MGP_C3HHeJ_G0026213.1 mouse_genomes_project 2 132271582 132313307 + Tgm6 protein_coding processed_transcript MGP_C3HHeJ_T0057286.1 MGP_C3HHeJ_G0026213.1 mouse_genomes_project 2 132282934 132313307 + Tgm6 protein_coding processed_transcript MGP_C3HHeJ_T0057287.1 MGP_C3HHeJ_G0026213.1 mouse_genomes_project 2 132282934 132313307 + MGP_C3HHeJ_P0057287 Tgm6 protein_coding protein_coding MGP_C3HHeJ_T0056878.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123053582 123082529 + MGP_C3HHeJ_P0056878 Pdia3 protein_coding protein_coding MGP_C3HHeJ_T0056879.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123053690 123066469 + Pdia3 protein_coding processed_transcript MGP_C3HHeJ_T0056880.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123053915 123076636 + MGP_C3HHeJ_P0056880 Pdia3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056881.1 MGP_C3HHeJ_G0026111.1 mouse_genomes_project 2 123066497 123075083 + Pdia3 protein_coding retained_intron MGP_C3HHeJ_T0059607.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333676 186339655 + MGP_C3HHeJ_P0059607 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059608.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333702 186339645 + MGP_C3HHeJ_P0059608 Oprl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059609.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333706 186337257 + MGP_C3HHeJ_P0059609 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059610.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333727 186339644 + MGP_C3HHeJ_P0059610 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059611.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333743 186339642 + MGP_C3HHeJ_P0059611 Oprl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059612.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333754 186339644 + Oprl1 protein_coding processed_transcript MGP_C3HHeJ_T0059613.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186333761 186335039 + Oprl1 protein_coding processed_transcript MGP_C3HHeJ_T0059614.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334008 186339642 + MGP_C3HHeJ_P0059614 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059615.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334253 186338018 + MGP_C3HHeJ_P0059615 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059616.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334362 186338039 + MGP_C3HHeJ_P0059616 Oprl1 protein_coding protein_coding MGP_C3HHeJ_T0059617.1 MGP_C3HHeJ_G0026752.1 mouse_genomes_project 2 186334363 186338039 + MGP_C3HHeJ_P0059617 Oprl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098110.1 MGP_C3HHeJ_G0036322.1 mouse_genomes_project 2 121175242 121175361 + n-R5s204 rRNA rRNA MGP_C3HHeJ_T0010283.1 MGP_C3HHeJ_G0008416.1 mouse_genomes_project 2 7718988 7719109 + Mir466l miRNA miRNA MGP_C3HHeJ_T0100494.1 MGP_C3HHeJ_G0038688.1 mouse_genomes_project 2 152443061 152443153 - Gm24551 snoRNA snoRNA MGP_C3HHeJ_T0004000.1 MGP_C3HHeJ_G0003545.1 mouse_genomes_project 2 124575649 124580745 - Bloc1s6os antisense antisense MGP_C3HHeJ_T0013360.1 MGP_C3HHeJ_G0011464.1 mouse_genomes_project 2 37278908 37279495 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054180.1 MGP_C3HHeJ_G0025408.1 mouse_genomes_project 2 35067986 35068925 + MGP_C3HHeJ_P0054180 Olfr50 protein_coding protein_coding MGP_C3HHeJ_T0010308.1 MGP_C3HHeJ_G0008441.1 mouse_genomes_project 2 27917124 27917195 + Mir6997 miRNA miRNA MGP_C3HHeJ_T0053358.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27722307 27748688 + Urm1 protein_coding processed_transcript MGP_C3HHeJ_T0053359.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731858 27748917 + Urm1 protein_coding processed_transcript MGP_C3HHeJ_T0053360.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731858 27750545 + MGP_C3HHeJ_P0053360 Urm1 protein_coding protein_coding MGP_C3HHeJ_T0053361.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731877 27748964 + Urm1 protein_coding processed_transcript MGP_C3HHeJ_T0053362.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27731911 27738152 + Urm1 protein_coding retained_intron MGP_C3HHeJ_T0053363.1 MGP_C3HHeJ_G0025280.1 mouse_genomes_project 2 27747190 27749607 + Urm1 protein_coding retained_intron MGP_C3HHeJ_T0058532.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160974466 160984461 - MGP_C3HHeJ_P0058532 Blcap protein_coding protein_coding MGP_C3HHeJ_T0058533.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160974466 160984437 - MGP_C3HHeJ_P0058533 Blcap protein_coding protein_coding MGP_C3HHeJ_T0058534.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160976205 160989117 - MGP_C3HHeJ_P0058534 Blcap protein_coding protein_coding MGP_C3HHeJ_T0058535.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160976291 160978111 - Blcap protein_coding processed_transcript MGP_C3HHeJ_T0058546.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160983689 160984431 - Blcap protein_coding processed_transcript MGP_C3HHeJ_T0058547.1 MGP_C3HHeJ_G0026500.1 mouse_genomes_project 2 160984974 160989117 - Blcap protein_coding processed_transcript MGP_C3HHeJ_T0013307.1 MGP_C3HHeJ_G0011411.1 mouse_genomes_project 2 17026186 17026414 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013555.1 MGP_C3HHeJ_G0011659.1 mouse_genomes_project 2 105656238 105656582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054169.1 MGP_C3HHeJ_G0025398.1 mouse_genomes_project 2 34651074 34651995 + MGP_C3HHeJ_P0054169 Olfr338 protein_coding protein_coding MGP_C3HHeJ_T0055096.1 MGP_C3HHeJ_G0025586.1 mouse_genomes_project 2 74288562 74290718 + MGP_C3HHeJ_P0055096 Hoxd1 protein_coding protein_coding MGP_C3HHeJ_T0099183.1 MGP_C3HHeJ_G0037377.1 mouse_genomes_project 2 26422992 26423096 + Gm22675 snRNA snRNA MGP_C3HHeJ_T0010391.1 MGP_C3HHeJ_G0008524.1 mouse_genomes_project 2 162575857 162575950 + Gm44319 miRNA miRNA MGP_C3HHeJ_T0059436.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185620764 185641512 - MGP_C3HHeJ_P0059436 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0059437.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185620765 185630730 - MGP_C3HHeJ_P0059437 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0059438.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185624711 185641742 - MGP_C3HHeJ_P0059438 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0059439.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185631826 185641662 - Chrna4 protein_coding processed_transcript MGP_C3HHeJ_T0059440.1 MGP_C3HHeJ_G0026725.1 mouse_genomes_project 2 185636425 185645994 - MGP_C3HHeJ_P0059440 Chrna4 protein_coding protein_coding MGP_C3HHeJ_T0055129.1 MGP_C3HHeJ_G0025598.1 mouse_genomes_project 2 76232697 76250646 - MGP_C3HHeJ_P0055129 Prkra protein_coding protein_coding MGP_C3HHeJ_T0055130.1 MGP_C3HHeJ_G0025598.1 mouse_genomes_project 2 76239420 76243359 - Prkra protein_coding processed_transcript MGP_C3HHeJ_T0055541.1 MGP_C3HHeJ_G0025778.1 mouse_genomes_project 2 88552990 88555042 - MGP_C3HHeJ_P0055541 protein_coding protein_coding MGP_C3HHeJ_T0056528.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629403 120638356 + MGP_C3HHeJ_P0056528 Rad51 protein_coding protein_coding MGP_C3HHeJ_T0056529.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629417 120652835 + MGP_C3HHeJ_P0056529 Rad51 protein_coding protein_coding MGP_C3HHeJ_T0056530.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629424 120649146 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0056531.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120629427 120652583 + MGP_C3HHeJ_P0056531 Rad51 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056532.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120635320 120636772 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0056533.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120638312 120663252 + MGP_C3HHeJ_P0056533 Rad51 protein_coding protein_coding MGP_C3HHeJ_T0056534.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120647056 120650006 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0056535.1 MGP_C3HHeJ_G0026051.1 mouse_genomes_project 2 120649712 120650759 + Rad51 protein_coding retained_intron MGP_C3HHeJ_T0017530.1 MGP_C3HHeJ_G0015167.1 mouse_genomes_project 2 25309121 25312058 + Gm13421 processed_transcript processed_transcript MGP_C3HHeJ_T0017531.1 MGP_C3HHeJ_G0015167.1 mouse_genomes_project 2 25309124 25311881 + Gm13421 processed_transcript processed_transcript MGP_C3HHeJ_T0052098.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2331263 2756548 - MGP_C3HHeJ_P0052098 Camk1d protein_coding protein_coding MGP_C3HHeJ_T0052099.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2336693 2724752 - MGP_C3HHeJ_P0052099 Camk1d protein_coding protein_coding MGP_C3HHeJ_T0052100.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2490855 2725106 - Camk1d protein_coding processed_transcript MGP_C3HHeJ_T0052101.1 MGP_C3HHeJ_G0025055.1 mouse_genomes_project 2 2606237 2756536 - Camk1d protein_coding processed_transcript MGP_C3HHeJ_T0013450.1 MGP_C3HHeJ_G0011554.1 mouse_genomes_project 2 71210316 71210846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013333.1 MGP_C3HHeJ_G0011437.1 mouse_genomes_project 2 27379634 27379925 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056472.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120091278 120138352 + MGP_C3HHeJ_P0056472 Bub1b protein_coding protein_coding MGP_C3HHeJ_T0056473.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120093204 120102866 + Bub1b protein_coding retained_intron MGP_C3HHeJ_T0056474.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120123400 120125115 + Bub1b protein_coding retained_intron MGP_C3HHeJ_T0056475.1 MGP_C3HHeJ_G0026037.1 mouse_genomes_project 2 120124822 120133509 + Bub1b protein_coding retained_intron MGP_C3HHeJ_T0056497.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321245 120344418 + MGP_C3HHeJ_P0056497 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056498.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321474 120340898 + MGP_C3HHeJ_P0056498 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056499.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321474 120340966 + MGP_C3HHeJ_P0056499 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056500.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321475 120340875 + MGP_C3HHeJ_P0056500 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056501.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321496 120341359 + MGP_C3HHeJ_P0056501 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056502.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321519 120337757 + MGP_C3HHeJ_P0056502 Knstrn protein_coding protein_coding MGP_C3HHeJ_T0056503.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120321538 120340785 + MGP_C3HHeJ_P0056503 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056504.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120338354 120343865 + MGP_C3HHeJ_P0056504 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056505.1 MGP_C3HHeJ_G0026044.1 mouse_genomes_project 2 120340791 120361548 + MGP_C3HHeJ_P0056505 Knstrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098391.1 MGP_C3HHeJ_G0036597.1 mouse_genomes_project 2 1165369 1167929 + Gm37107 sense_intronic sense_intronic MGP_C3HHeJ_T0056392.1 MGP_C3HHeJ_G0026020.1 mouse_genomes_project 2 115318614 115324198 - MGP_C3HHeJ_P0056392 Actc1 protein_coding protein_coding MGP_C3HHeJ_T0056393.1 MGP_C3HHeJ_G0026020.1 mouse_genomes_project 2 115323224 115324845 - MGP_C3HHeJ_P0056393 Actc1 protein_coding protein_coding MGP_C3HHeJ_T0056969.1 MGP_C3HHeJ_G0026135.1 mouse_genomes_project 2 124410445 124431506 - MGP_C3HHeJ_P0056969 Gatm protein_coding protein_coding MGP_C3HHeJ_T0056970.1 MGP_C3HHeJ_G0026135.1 mouse_genomes_project 2 124411463 124414485 - Gatm protein_coding processed_transcript MGP_C3HHeJ_T0056971.1 MGP_C3HHeJ_G0026135.1 mouse_genomes_project 2 124411580 124414763 - Gatm protein_coding retained_intron MGP_C3HHeJ_T0013712.1 MGP_C3HHeJ_G0011816.1 mouse_genomes_project 2 169750865 169751462 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056578.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121085154 121127011 + MGP_C3HHeJ_P0056578 Chp1 protein_coding protein_coding MGP_C3HHeJ_T0056579.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121085182 121128881 + MGP_C3HHeJ_P0056579 Chp1 protein_coding protein_coding MGP_C3HHeJ_T0056580.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121085273 121112970 + Chp1 protein_coding retained_intron MGP_C3HHeJ_T0056581.1 MGP_C3HHeJ_G0026065.1 mouse_genomes_project 2 121107822 121127256 + Chp1 protein_coding retained_intron MGP_C3HHeJ_T0013589.1 MGP_C3HHeJ_G0011693.1 mouse_genomes_project 2 121222154 121222540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052355.1 MGP_C3HHeJ_G0025094.1 mouse_genomes_project 2 11522408 11572466 + MGP_C3HHeJ_P0052355 Tmem236 protein_coding protein_coding MGP_C3HHeJ_T0058491.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160472584 160511834 - MGP_C3HHeJ_P0058491 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058492.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160474477 160511662 - MGP_C3HHeJ_P0058492 Samhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058493.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160474477 160511689 - MGP_C3HHeJ_P0058493 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058494.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160476436 160511791 - MGP_C3HHeJ_P0058494 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058495.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160476770 160487312 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0058496.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160478389 160511775 - MGP_C3HHeJ_P0058496 Samhd1 protein_coding protein_coding MGP_C3HHeJ_T0058497.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160485979 160487311 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0058498.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160496227 160511506 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0058499.1 MGP_C3HHeJ_G0026493.1 mouse_genomes_project 2 160498510 160506721 - Samhd1 protein_coding retained_intron MGP_C3HHeJ_T0054855.1 MGP_C3HHeJ_G0025538.1 mouse_genomes_project 2 69175909 69178290 + Klhl23 protein_coding processed_transcript MGP_C3HHeJ_T0054856.1 MGP_C3HHeJ_G0025538.1 mouse_genomes_project 2 69176335 69190621 + MGP_C3HHeJ_P0054856 Klhl23 protein_coding protein_coding MGP_C3HHeJ_T0054857.1 MGP_C3HHeJ_G0025538.1 mouse_genomes_project 2 69178320 69180211 + Klhl23 protein_coding processed_transcript MGP_C3HHeJ_T0052863.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147852 23151192 - MGP_C3HHeJ_P0052863 Ptgds protein_coding protein_coding MGP_C3HHeJ_T0052864.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147852 23150988 - MGP_C3HHeJ_P0052864 Ptgds protein_coding protein_coding MGP_C3HHeJ_T0052865.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147852 23150895 - MGP_C3HHeJ_P0052865 Ptgds protein_coding protein_coding MGP_C3HHeJ_T0052866.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147854 23150529 - Ptgds protein_coding retained_intron MGP_C3HHeJ_T0052867.1 MGP_C3HHeJ_G0025183.1 mouse_genomes_project 2 23147855 23150303 - Ptgds protein_coding processed_transcript MGP_C3HHeJ_T0055615.1 MGP_C3HHeJ_G0025838.1 mouse_genomes_project 2 90110649 90113965 + MGP_C3HHeJ_P0055615 Olfr1257 protein_coding protein_coding MGP_C3HHeJ_T0055616.1 MGP_C3HHeJ_G0025838.1 mouse_genomes_project 2 90113001 90114017 + MGP_C3HHeJ_P0055616 Olfr1257 protein_coding protein_coding MGP_C3HHeJ_T0010354.1 MGP_C3HHeJ_G0008487.1 mouse_genomes_project 2 95034113 95034192 - Gm44461 miRNA miRNA MGP_C3HHeJ_T0054111.1 MGP_C3HHeJ_G0025386.1 mouse_genomes_project 2 33543476 33566467 - MGP_C3HHeJ_P0054111 Stom protein_coding protein_coding MGP_C3HHeJ_T0054112.1 MGP_C3HHeJ_G0025386.1 mouse_genomes_project 2 33544829 33549994 - Stom protein_coding retained_intron MGP_C3HHeJ_T0054298.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37422426 37552306 - MGP_C3HHeJ_P0054298 protein_coding protein_coding MGP_C3HHeJ_T0054299.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37430977 37552277 - MGP_C3HHeJ_P0054299 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054300.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37431219 37552264 - MGP_C3HHeJ_P0054300 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054301.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37431284 37456506 - MGP_C3HHeJ_P0054301 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054302.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37437151 37552302 - MGP_C3HHeJ_P0054302 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054303.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37459578 37552306 - protein_coding retained_intron MGP_C3HHeJ_T0054304.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37462456 37552302 - protein_coding retained_intron MGP_C3HHeJ_T0054305.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37465683 37467738 - protein_coding retained_intron MGP_C3HHeJ_T0054306.1 MGP_C3HHeJ_G0025444.1 mouse_genomes_project 2 37465832 37480101 - protein_coding retained_intron MGP_C3HHeJ_T0101914.1 MGP_C3HHeJ_G0039879.1 mouse_genomes_project 2 88452639 88453575 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100499.1 MGP_C3HHeJ_G0038693.1 mouse_genomes_project 2 154283654 154283790 - snoRNA snoRNA MGP_C3HHeJ_T0013631.1 MGP_C3HHeJ_G0011735.1 mouse_genomes_project 2 142412870 142413298 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058628.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164210306 164291013 + MGP_C3HHeJ_P0058628 Top1 protein_coding protein_coding MGP_C3HHeJ_T0058629.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164210398 164214526 + Top1 protein_coding processed_transcript MGP_C3HHeJ_T0058630.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164234579 164250399 + Top1 protein_coding retained_intron MGP_C3HHeJ_T0058631.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164251116 164259041 + Top1 protein_coding retained_intron MGP_C3HHeJ_T0058632.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164269292 164270829 + Top1 protein_coding processed_transcript MGP_C3HHeJ_T0058633.1 MGP_C3HHeJ_G0026522.1 mouse_genomes_project 2 164285735 164289633 + Top1 protein_coding retained_intron MGP_C3HHeJ_T0059049.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966070 170970195 + protein_coding antisense MGP_C3HHeJ_T0059050.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966070 170970194 + MGP_C3HHeJ_P0059050 protein_coding protein_coding MGP_C3HHeJ_T0059051.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966071 170969907 + protein_coding retained_intron MGP_C3HHeJ_T0059052.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966357 170969715 + protein_coding retained_intron MGP_C3HHeJ_T0059053.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966359 170970055 + protein_coding retained_intron MGP_C3HHeJ_T0059054.1 MGP_C3HHeJ_G0026626.1 mouse_genomes_project 2 170966785 170970195 + protein_coding retained_intron MGP_C3HHeJ_T0099179.1 MGP_C3HHeJ_G0037373.1 mouse_genomes_project 2 22675289 22675393 - Gm24875 snRNA snRNA MGP_C3HHeJ_T0013577.1 MGP_C3HHeJ_G0011681.1 mouse_genomes_project 2 113125885 113127638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055545.1 MGP_C3HHeJ_G0025782.1 mouse_genomes_project 2 88644164 88644551 - MGP_C3HHeJ_P0055545 Olfr1187-ps1 protein_coding protein_coding MGP_C3HHeJ_T0055546.1 MGP_C3HHeJ_G0025782.1 mouse_genomes_project 2 88644167 88644470 - MGP_C3HHeJ_P0055546 Olfr1187-ps1 protein_coding protein_coding MGP_C3HHeJ_T0007348.1 MGP_C3HHeJ_G0006022.1 mouse_genomes_project 2 183930148 183932093 + 4930591A17Rik lincRNA lincRNA MGP_C3HHeJ_T0053208.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25452587 25521480 + MGP_C3HHeJ_P0053208 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053209.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25487342 25541131 + MGP_C3HHeJ_P0053209 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053210.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25488633 25541131 + MGP_C3HHeJ_P0053210 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053211.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25516880 25543905 + MGP_C3HHeJ_P0053211 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053212.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25516880 25542365 + MGP_C3HHeJ_P0053212 Rxra protein_coding protein_coding MGP_C3HHeJ_T0053213.1 MGP_C3HHeJ_G0025250.1 mouse_genomes_project 2 25519782 25529619 + Rxra protein_coding processed_transcript MGP_C3HHeJ_T0059404.1 MGP_C3HHeJ_G0026719.1 mouse_genomes_project 2 185359267 185361787 - MGP_C3HHeJ_P0059404 Bhlhe23 protein_coding protein_coding MGP_C3HHeJ_T0054280.1 MGP_C3HHeJ_G0025441.1 mouse_genomes_project 2 37354878 37358923 - MGP_C3HHeJ_P0054280 Rpl35 protein_coding protein_coding MGP_C3HHeJ_T0054281.1 MGP_C3HHeJ_G0025441.1 mouse_genomes_project 2 37354917 37358342 - Rpl35 protein_coding processed_transcript MGP_C3HHeJ_T0054282.1 MGP_C3HHeJ_G0025441.1 mouse_genomes_project 2 37357910 37358421 - Rpl35 protein_coding processed_transcript MGP_C3HHeJ_T0099225.1 MGP_C3HHeJ_G0037419.1 mouse_genomes_project 2 156253704 156253807 + Gm25643 snRNA snRNA MGP_C3HHeJ_T0013466.1 MGP_C3HHeJ_G0011570.1 mouse_genomes_project 2 76920244 76921354 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007237.1 MGP_C3HHeJ_G0005928.1 mouse_genomes_project 2 126650542 126652971 + Gm13994 lincRNA lincRNA MGP_C3HHeJ_T0013461.1 MGP_C3HHeJ_G0011565.1 mouse_genomes_project 2 74154190 74154649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059063.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345702 171404660 + MGP_C3HHeJ_P0059063 Slc9a8 protein_coding protein_coding MGP_C3HHeJ_T0059064.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345711 171402296 + MGP_C3HHeJ_P0059064 Slc9a8 protein_coding protein_coding MGP_C3HHeJ_T0059065.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345711 171404658 + MGP_C3HHeJ_P0059065 Slc9a8 protein_coding protein_coding MGP_C3HHeJ_T0059066.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345713 171350125 + Slc9a8 protein_coding retained_intron MGP_C3HHeJ_T0059067.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345720 171372355 + Slc9a8 protein_coding retained_intron MGP_C3HHeJ_T0059068.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345722 171404659 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059069.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345727 171360592 + Slc9a8 protein_coding retained_intron MGP_C3HHeJ_T0059070.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345728 171395369 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059071.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171345732 171404659 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059072.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171348109 171395396 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059073.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171376370 171395394 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059074.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171376459 171396736 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0059075.1 MGP_C3HHeJ_G0026630.1 mouse_genomes_project 2 171376559 171404659 + Slc9a8 protein_coding processed_transcript MGP_C3HHeJ_T0098112.1 MGP_C3HHeJ_G0036324.1 mouse_genomes_project 2 123588619 123588733 - Gm23983 rRNA rRNA MGP_C3HHeJ_T0053281.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26657130 26675208 - MGP_C3HHeJ_P0053281 Gtf3c4 protein_coding protein_coding MGP_C3HHeJ_T0053282.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26657136 26675134 - MGP_C3HHeJ_P0053282 Gtf3c4 protein_coding protein_coding MGP_C3HHeJ_T0053283.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26670051 26675134 - Gtf3c4 protein_coding processed_transcript MGP_C3HHeJ_T0053284.1 MGP_C3HHeJ_G0025266.1 mouse_genomes_project 2 26670151 26675200 - Gtf3c4 protein_coding processed_transcript MGP_C3HHeJ_T0056124.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104485793 104523191 - MGP_C3HHeJ_P0056124 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056125.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104487870 104522646 - MGP_C3HHeJ_P0056125 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056126.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104491337 104497012 - MGP_C3HHeJ_P0056126 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056127.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104492042 104496024 - MGP_C3HHeJ_P0056127 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056128.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104492680 104496915 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056129.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104495941 104498503 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056130.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104496979 104497942 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056131.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104497228 104503599 - MGP_C3HHeJ_P0056131 Caprin1 protein_coding protein_coding MGP_C3HHeJ_T0056132.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104497231 104500239 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056133.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104497701 104499885 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056134.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104502193 104522475 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056135.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104503754 104522086 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056136.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104506651 104522515 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0056137.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104507049 104522410 - Caprin1 protein_coding processed_transcript MGP_C3HHeJ_T0056138.1 MGP_C3HHeJ_G0025928.1 mouse_genomes_project 2 104521993 104523141 - Caprin1 protein_coding retained_intron MGP_C3HHeJ_T0013602.1 MGP_C3HHeJ_G0011706.1 mouse_genomes_project 2 130658980 130659961 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057822.1 MGP_C3HHeJ_G0026339.1 mouse_genomes_project 2 151735342 151739197 - MGP_C3HHeJ_P0057822 Cst3 protein_coding protein_coding MGP_C3HHeJ_T0057823.1 MGP_C3HHeJ_G0026339.1 mouse_genomes_project 2 151736089 151739072 - Cst3 protein_coding processed_transcript MGP_C3HHeJ_T0057824.1 MGP_C3HHeJ_G0026339.1 mouse_genomes_project 2 151736465 151739313 - MGP_C3HHeJ_P0057824 Cst3 protein_coding protein_coding MGP_C3HHeJ_T0001032.1 MGP_C3HHeJ_G0000969.1 mouse_genomes_project 2 33509880 33511501 + TEC TEC MGP_C3HHeJ_T0055518.1 MGP_C3HHeJ_G0025756.1 mouse_genomes_project 2 87910149 87911127 + MGP_C3HHeJ_P0055518 Olfr1145 protein_coding protein_coding MGP_C3HHeJ_T0003844.1 MGP_C3HHeJ_G0003437.1 mouse_genomes_project 2 22941682 22949388 + Grin1os antisense antisense MGP_C3HHeJ_T0013654.1 MGP_C3HHeJ_G0011758.1 mouse_genomes_project 2 149951171 149951972 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055365.1 MGP_C3HHeJ_G0025645.1 mouse_genomes_project 2 84625870 84641610 - MGP_C3HHeJ_P0055365 Rtn4rl2 protein_coding protein_coding MGP_C3HHeJ_T0055366.1 MGP_C3HHeJ_G0025645.1 mouse_genomes_project 2 84625892 84641592 - MGP_C3HHeJ_P0055366 Rtn4rl2 protein_coding protein_coding MGP_C3HHeJ_T0055367.1 MGP_C3HHeJ_G0025645.1 mouse_genomes_project 2 84634462 84641376 - Rtn4rl2 protein_coding processed_transcript MGP_C3HHeJ_T0010339.1 MGP_C3HHeJ_G0008472.1 mouse_genomes_project 2 75913010 75913124 + Gm44337 miRNA miRNA MGP_C3HHeJ_T0003912.1 MGP_C3HHeJ_G0003486.1 mouse_genomes_project 2 61845569 61847184 + Gm13569 antisense antisense MGP_C3HHeJ_T0052736.1 MGP_C3HHeJ_G0025162.1 mouse_genomes_project 2 22883018 22885330 - MGP_C3HHeJ_P0052736 Rnf224 protein_coding protein_coding MGP_C3HHeJ_T0052737.1 MGP_C3HHeJ_G0025162.1 mouse_genomes_project 2 22883525 22885232 - MGP_C3HHeJ_P0052737 Rnf224 protein_coding protein_coding MGP_C3HHeJ_T0101920.1 MGP_C3HHeJ_G0039885.1 mouse_genomes_project 2 90738582 90760681 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017562.1 MGP_C3HHeJ_G0015187.1 mouse_genomes_project 2 69227381 69228151 - Gm13625 processed_transcript processed_transcript MGP_C3HHeJ_T0056348.1 MGP_C3HHeJ_G0026005.1 mouse_genomes_project 2 113490474 113491821 + MGP_C3HHeJ_P0056348 Nop10 protein_coding protein_coding MGP_C3HHeJ_T0013299.1 MGP_C3HHeJ_G0011403.1 mouse_genomes_project 2 15639454 15639868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010326.1 MGP_C3HHeJ_G0008459.1 mouse_genomes_project 2 37187519 37187608 + Mir181b-2 miRNA miRNA MGP_C3HHeJ_T0054612.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59384969 59527401 - MGP_C3HHeJ_P0054612 Pla2r1 protein_coding protein_coding MGP_C3HHeJ_T0054613.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59387451 59392448 - Pla2r1 protein_coding processed_transcript MGP_C3HHeJ_T0054614.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59408986 59411521 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0054615.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59419212 59527401 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0054616.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59420083 59423346 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0054617.1 MGP_C3HHeJ_G0025494.1 mouse_genomes_project 2 59505075 59527401 - Pla2r1 protein_coding retained_intron MGP_C3HHeJ_T0056544.1 MGP_C3HHeJ_G0026054.1 mouse_genomes_project 2 120688164 120728180 - MGP_C3HHeJ_P0056544 Dnajc17 protein_coding protein_coding MGP_C3HHeJ_T0056546.1 MGP_C3HHeJ_G0026054.1 mouse_genomes_project 2 120695086 120699319 - Dnajc17 protein_coding processed_transcript MGP_C3HHeJ_T0056547.1 MGP_C3HHeJ_G0026054.1 mouse_genomes_project 2 120699356 120728167 - Dnajc17 protein_coding retained_intron MGP_C3HHeJ_T0054055.1 MGP_C3HHeJ_G0025378.1 mouse_genomes_project 2 33092158 33102678 + Cutal protein_coding retained_intron MGP_C3HHeJ_T0054056.1 MGP_C3HHeJ_G0025378.1 mouse_genomes_project 2 33092225 33110505 + MGP_C3HHeJ_P0054056 Cutal protein_coding protein_coding MGP_C3HHeJ_T0013566.1 MGP_C3HHeJ_G0011670.1 mouse_genomes_project 2 109659291 109660282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013328.1 MGP_C3HHeJ_G0011432.1 mouse_genomes_project 2 24300108 24300677 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100463.1 MGP_C3HHeJ_G0038657.1 mouse_genomes_project 2 71454540 71454667 - Gm26408 snoRNA snoRNA MGP_C3HHeJ_T0058821.1 MGP_C3HHeJ_G0026579.1 mouse_genomes_project 2 168352096 168361799 + MGP_C3HHeJ_P0058821 Wfdc6a protein_coding protein_coding MGP_C3HHeJ_T0055515.1 MGP_C3HHeJ_G0025754.1 mouse_genomes_project 2 87882552 87883503 + MGP_C3HHeJ_P0055515 Olfr152 protein_coding protein_coding MGP_C3HHeJ_T0055516.1 MGP_C3HHeJ_G0025754.1 mouse_genomes_project 2 87882558 87883503 + MGP_C3HHeJ_P0055516 Olfr152 protein_coding protein_coding MGP_C3HHeJ_T0052587.1 MGP_C3HHeJ_G0025138.1 mouse_genomes_project 2 21818609 21833149 + MGP_C3HHeJ_P0052587 Il1f6 protein_coding protein_coding MGP_C3HHeJ_T0052588.1 MGP_C3HHeJ_G0025138.1 mouse_genomes_project 2 21818696 21832972 + Il1f6 protein_coding processed_transcript MGP_C3HHeJ_T0059330.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642039 184647063 - MGP_C3HHeJ_P0059330 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059331.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642225 184646726 - MGP_C3HHeJ_P0059331 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059332.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642452 184646726 - MGP_C3HHeJ_P0059332 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059333.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642452 184646726 - MGP_C3HHeJ_P0059333 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059334.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184642853 184646749 - MGP_C3HHeJ_P0059334 Hrh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059335.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184643070 184646726 - MGP_C3HHeJ_P0059335 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059336.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184643070 184646726 - MGP_C3HHeJ_P0059336 Hrh3 protein_coding protein_coding MGP_C3HHeJ_T0059337.1 MGP_C3HHeJ_G0026702.1 mouse_genomes_project 2 184643558 184645910 - Hrh3 protein_coding retained_intron MGP_C3HHeJ_T0017516.1 MGP_C3HHeJ_G0015159.1 mouse_genomes_project 2 15503787 15506208 - 1810059C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011419.1 MGP_C3HHeJ_G0009552.1 mouse_genomes_project 2 145033205 145033509 + Gm23179 misc_RNA misc_RNA MGP_C3HHeJ_T0007270.1 MGP_C3HHeJ_G0005955.1 mouse_genomes_project 2 151321447 151331216 + Gm14120 lincRNA lincRNA MGP_C3HHeJ_T0007246.1 MGP_C3HHeJ_G0005935.1 mouse_genomes_project 2 134685742 134712048 + 4921508D12Rik lincRNA lincRNA MGP_C3HHeJ_T0055930.1 MGP_C3HHeJ_G0025892.1 mouse_genomes_project 2 93363278 93407352 + MGP_C3HHeJ_P0055930 Syt13 protein_coding protein_coding MGP_C3HHeJ_T0013357.1 MGP_C3HHeJ_G0011461.1 mouse_genomes_project 2 35970342 35971138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017532.1 MGP_C3HHeJ_G0015168.1 mouse_genomes_project 2 25667614 25671742 - 2810430I11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0057209.1 MGP_C3HHeJ_G0026191.1 mouse_genomes_project 2 130567182 130568436 + MGP_C3HHeJ_P0057209 Gm29010 protein_coding protein_coding MGP_C3HHeJ_T0101882.1 MGP_C3HHeJ_G0039847.1 mouse_genomes_project 2 35304921 35305865 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013537.1 MGP_C3HHeJ_G0011641.1 mouse_genomes_project 2 100960187 100960443 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007162.1 MGP_C3HHeJ_G0005869.1 mouse_genomes_project 2 76942049 76945582 + Gm13943 lincRNA lincRNA MGP_C3HHeJ_T0010331.1 MGP_C3HHeJ_G0008464.1 mouse_genomes_project 2 60774500 60774584 - Gm22403 miRNA miRNA MGP_C3HHeJ_T0101889.1 MGP_C3HHeJ_G0039854.1 mouse_genomes_project 2 85371510 85372431 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055931.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93416459 93502652 - MGP_C3HHeJ_P0055931 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0055932.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93427110 93503225 - MGP_C3HHeJ_P0055932 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0055933.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93438422 93467144 - MGP_C3HHeJ_P0055933 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0055934.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93462072 93467171 - Prdm11 protein_coding processed_transcript MGP_C3HHeJ_T0055935.1 MGP_C3HHeJ_G0025893.1 mouse_genomes_project 2 93465875 93503248 - MGP_C3HHeJ_P0055935 Prdm11 protein_coding protein_coding MGP_C3HHeJ_T0010321.1 MGP_C3HHeJ_G0008454.1 mouse_genomes_project 2 31498770 31498823 - Gm25998 miRNA miRNA MGP_C3HHeJ_T0059092.1 MGP_C3HHeJ_G0026636.1 mouse_genomes_project 2 171635576 171637080 + MGP_C3HHeJ_P0059092 Cebpb protein_coding protein_coding MGP_C3HHeJ_T0013727.1 MGP_C3HHeJ_G0011831.1 mouse_genomes_project 2 178366231 178366886 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007138.1 MGP_C3HHeJ_G0005850.1 mouse_genomes_project 2 71196171 71198243 - Gm17250 lincRNA lincRNA MGP_C3HHeJ_T0054655.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60814980 60816607 + Tbr1 protein_coding processed_transcript MGP_C3HHeJ_T0054656.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60816501 60826162 + MGP_C3HHeJ_P0054656 Tbr1 protein_coding protein_coding MGP_C3HHeJ_T0054657.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60818310 60824579 + MGP_C3HHeJ_P0054657 Tbr1 protein_coding protein_coding MGP_C3HHeJ_T0054658.1 MGP_C3HHeJ_G0025499.1 mouse_genomes_project 2 60818321 60823849 + Tbr1 protein_coding processed_transcript MGP_C3HHeJ_T0013614.1 MGP_C3HHeJ_G0011718.1 mouse_genomes_project 2 133642192 133642517 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057600.1 MGP_C3HHeJ_G0026278.1 mouse_genomes_project 2 139125245 139194769 + MGP_C3HHeJ_P0057600 Snap25 protein_coding protein_coding MGP_C3HHeJ_T0057601.1 MGP_C3HHeJ_G0026278.1 mouse_genomes_project 2 139125246 139175054 + Snap25 protein_coding retained_intron MGP_C3HHeJ_T0057602.1 MGP_C3HHeJ_G0026278.1 mouse_genomes_project 2 139125270 139193692 + MGP_C3HHeJ_P0057602 Snap25 protein_coding protein_coding MGP_C3HHeJ_T0054909.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346300 70442938 - MGP_C3HHeJ_P0054909 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054910.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346307 70442968 - MGP_C3HHeJ_P0054910 Mettl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054911.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346307 70442968 - MGP_C3HHeJ_P0054911 Mettl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054912.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70346307 70442968 - MGP_C3HHeJ_P0054912 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054913.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70347907 70355186 - MGP_C3HHeJ_P0054913 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054914.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70348225 70364525 - MGP_C3HHeJ_P0054914 Mettl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054915.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70348792 70357976 - Mettl8 protein_coding retained_intron MGP_C3HHeJ_T0054916.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70361299 70442957 - MGP_C3HHeJ_P0054916 Mettl8 protein_coding protein_coding MGP_C3HHeJ_T0054917.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70363393 70442968 - Mettl8 protein_coding retained_intron MGP_C3HHeJ_T0054918.1 MGP_C3HHeJ_G0025549.1 mouse_genomes_project 2 70375656 70402740 - Mettl8 protein_coding retained_intron MGP_C3HHeJ_T0057805.1 MGP_C3HHeJ_G0026330.1 mouse_genomes_project 2 151560109 151599887 - MGP_C3HHeJ_P0057805 Napb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057806.1 MGP_C3HHeJ_G0026330.1 mouse_genomes_project 2 151560109 151599941 - MGP_C3HHeJ_P0057806 Napb protein_coding protein_coding MGP_C3HHeJ_T0057807.1 MGP_C3HHeJ_G0026330.1 mouse_genomes_project 2 151572542 151599865 - Napb protein_coding retained_intron MGP_C3HHeJ_T0098401.1 MGP_C3HHeJ_G0036607.1 mouse_genomes_project 2 148072724 148115392 + Gm14093 sense_intronic sense_intronic MGP_C3HHeJ_T0056728.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222391 - MGP_C3HHeJ_P0056728 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056729.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222226 - MGP_C3HHeJ_P0056729 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056730.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222381 - MGP_C3HHeJ_P0056730 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056731.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217099 122222186 - MGP_C3HHeJ_P0056731 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056732.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122217681 122220843 - MGP_C3HHeJ_P0056732 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056733.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122218854 122222379 - MGP_C3HHeJ_P0056733 Lrrc57 protein_coding protein_coding MGP_C3HHeJ_T0056734.1 MGP_C3HHeJ_G0026090.1 mouse_genomes_project 2 122221688 122222173 - Lrrc57 protein_coding retained_intron MGP_C3HHeJ_T0017622.1 MGP_C3HHeJ_G0015221.1 mouse_genomes_project 2 119730344 119758661 - Gm29232 processed_transcript processed_transcript MGP_C3HHeJ_T0010301.1 MGP_C3HHeJ_G0008434.1 mouse_genomes_project 2 24337174 24337232 - Mir126b miRNA miRNA MGP_C3HHeJ_T0013327.1 MGP_C3HHeJ_G0011431.1 mouse_genomes_project 2 23697393 23698030 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013638.1 MGP_C3HHeJ_G0011742.1 mouse_genomes_project 2 145810526 145811146 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098248.1 MGP_C3HHeJ_G0036460.1 mouse_genomes_project 2 133640952 133641254 - Gm22902 ribozyme ribozyme MGP_C3HHeJ_T0057119.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129164775 129195629 - MGP_C3HHeJ_P0057119 Ncaph protein_coding protein_coding MGP_C3HHeJ_T0057120.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129164793 129174833 - Ncaph protein_coding retained_intron MGP_C3HHeJ_T0057121.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129164916 129195577 - MGP_C3HHeJ_P0057121 Ncaph protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057122.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129168751 129177882 - Ncaph protein_coding retained_intron MGP_C3HHeJ_T0057123.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129182518 129183666 - Ncaph protein_coding retained_intron MGP_C3HHeJ_T0057124.1 MGP_C3HHeJ_G0026168.1 mouse_genomes_project 2 129189298 129195572 - Ncaph protein_coding processed_transcript MGP_C3HHeJ_T0052319.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10399375 10605370 - MGP_C3HHeJ_P0052319 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052320.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10399566 10605452 - MGP_C3HHeJ_P0052320 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052321.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10399749 10605431 - MGP_C3HHeJ_P0052321 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052322.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10496527 10605345 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052323.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10550591 10605370 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052324.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10551361 10605307 - MGP_C3HHeJ_P0052324 Rsu1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052325.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10553184 10605258 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052326.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10553697 10605328 - MGP_C3HHeJ_P0052326 Rsu1 protein_coding protein_coding MGP_C3HHeJ_T0052327.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10601497 10605348 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0052328.1 MGP_C3HHeJ_G0025087.1 mouse_genomes_project 2 10604796 10605333 - Rsu1 protein_coding retained_intron MGP_C3HHeJ_T0007112.1 MGP_C3HHeJ_G0005826.1 mouse_genomes_project 2 44983823 45010526 - Gm13470 lincRNA lincRNA MGP_C3HHeJ_T0004088.1 MGP_C3HHeJ_G0003611.1 mouse_genomes_project 2 168507735 168525984 - Gm11457 antisense antisense MGP_C3HHeJ_T0004089.1 MGP_C3HHeJ_G0003611.1 mouse_genomes_project 2 168507745 168525989 - Gm11457 antisense antisense MGP_C3HHeJ_T0004090.1 MGP_C3HHeJ_G0003611.1 mouse_genomes_project 2 168507757 168526031 - Gm11457 antisense antisense MGP_C3HHeJ_T0055006.1 MGP_C3HHeJ_G0025564.1 mouse_genomes_project 2 72458787 72474414 - MGP_C3HHeJ_P0055006 Gm11084 protein_coding protein_coding MGP_C3HHeJ_T0055504.1 MGP_C3HHeJ_G0025744.1 mouse_genomes_project 2 87720371 87721298 - MGP_C3HHeJ_P0055504 Olfr1132 protein_coding protein_coding MGP_C3HHeJ_T0004044.1 MGP_C3HHeJ_G0003574.1 mouse_genomes_project 2 147040410 147041591 + 1700108N11Rik antisense antisense MGP_C3HHeJ_T0055017.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823031 72848930 + MGP_C3HHeJ_P0055017 Scrn3 protein_coding protein_coding MGP_C3HHeJ_T0055018.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823084 72831236 + MGP_C3HHeJ_P0055018 Scrn3 protein_coding protein_coding MGP_C3HHeJ_T0055019.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823089 72826241 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0055020.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823089 72840914 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0055021.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72823106 72832462 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0055022.1 MGP_C3HHeJ_G0025568.1 mouse_genomes_project 2 72829839 72847411 + Scrn3 protein_coding processed_transcript MGP_C3HHeJ_T0052818.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23067431 23076371 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052819.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23068549 23078209 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052820.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073101 23079495 + MGP_C3HHeJ_P0052820 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052821.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073137 23076879 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052822.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073199 23077878 + MGP_C3HHeJ_P0052822 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052823.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073201 23079495 + MGP_C3HHeJ_P0052823 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052824.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073224 23078346 + MGP_C3HHeJ_P0052824 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052825.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073269 23077142 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052826.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23073478 23078034 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052827.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23074115 23079492 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052828.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23076337 23079495 + MGP_C3HHeJ_P0052828 Npdc1 protein_coding protein_coding MGP_C3HHeJ_T0052829.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23077312 23079257 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052830.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23077722 23079489 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052831.1 MGP_C3HHeJ_G0025178.1 mouse_genomes_project 2 23078873 23079492 + Npdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052388.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 13762731 14169274 + MGP_C3HHeJ_P0052388 Plxdc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052389.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 13763573 14169656 + MGP_C3HHeJ_P0052389 Plxdc2 protein_coding protein_coding MGP_C3HHeJ_T0052390.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 13763803 14169824 + MGP_C3HHeJ_P0052390 Plxdc2 protein_coding protein_coding MGP_C3HHeJ_T0052391.1 MGP_C3HHeJ_G0025101.1 mouse_genomes_project 2 14046411 14169657 + Plxdc2 protein_coding processed_transcript MGP_C3HHeJ_T0010327.1 MGP_C3HHeJ_G0008460.1 mouse_genomes_project 2 40878675 40878805 - Mir6336 miRNA miRNA MGP_C3HHeJ_T0058264.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159046904 159051214 + MGP_C3HHeJ_P0058264 Procr protein_coding protein_coding MGP_C3HHeJ_T0058265.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159046910 159050072 + MGP_C3HHeJ_P0058265 Procr protein_coding protein_coding MGP_C3HHeJ_T0058266.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159046937 159049539 + Procr protein_coding retained_intron MGP_C3HHeJ_T0058267.1 MGP_C3HHeJ_G0026460.1 mouse_genomes_project 2 159047130 159051211 + Procr protein_coding processed_transcript MGP_C3HHeJ_T0058652.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164454381 164481815 + MGP_C3HHeJ_P0058652 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058653.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164461791 164481820 + MGP_C3HHeJ_P0058653 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058654.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164461791 164481820 + MGP_C3HHeJ_P0058654 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058655.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164461854 164481610 + MGP_C3HHeJ_P0058655 Lpin3 protein_coding protein_coding MGP_C3HHeJ_T0058656.1 MGP_C3HHeJ_G0026525.1 mouse_genomes_project 2 164477366 164479555 + Lpin3 protein_coding processed_transcript MGP_C3HHeJ_T0056634.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121599913 121616418 + MGP_C3HHeJ_P0056634 Gm28042 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056636.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121599924 121616418 + MGP_C3HHeJ_P0056636 Gm28042 protein_coding protein_coding MGP_C3HHeJ_T0056637.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121599927 121613851 + MGP_C3HHeJ_P0056637 Gm28042 protein_coding protein_coding MGP_C3HHeJ_T0056641.1 MGP_C3HHeJ_G0026077.1 mouse_genomes_project 2 121604125 121607263 + MGP_C3HHeJ_P0056641 Gm28042 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058146.1 MGP_C3HHeJ_G0026435.1 mouse_genomes_project 2 157756657 157760501 + 1700003F12Rik protein_coding retained_intron MGP_C3HHeJ_T0058148.1 MGP_C3HHeJ_G0026435.1 mouse_genomes_project 2 157759570 157760686 + MGP_C3HHeJ_P0058148 1700003F12Rik protein_coding protein_coding MGP_C3HHeJ_T0058149.1 MGP_C3HHeJ_G0026435.1 mouse_genomes_project 2 157759609 157760686 + MGP_C3HHeJ_P0058149 1700003F12Rik protein_coding protein_coding MGP_C3HHeJ_T0013707.1 MGP_C3HHeJ_G0011811.1 mouse_genomes_project 2 166546762 166547452 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010359.1 MGP_C3HHeJ_G0008492.1 mouse_genomes_project 2 113869712 113869834 + Gm44374 miRNA miRNA MGP_C3HHeJ_T0056438.1 MGP_C3HHeJ_G0026029.1 mouse_genomes_project 2 118659672 118670101 + Fam98b protein_coding retained_intron MGP_C3HHeJ_T0056439.1 MGP_C3HHeJ_G0026029.1 mouse_genomes_project 2 118659672 118682892 + MGP_C3HHeJ_P0056439 Fam98b protein_coding protein_coding MGP_C3HHeJ_T0056440.1 MGP_C3HHeJ_G0026029.1 mouse_genomes_project 2 118668638 118670099 + Fam98b protein_coding processed_transcript MGP_C3HHeJ_T0056925.1 MGP_C3HHeJ_G0026120.1 mouse_genomes_project 2 123646396 123648992 - MGP_C3HHeJ_P0056925 protein_coding protein_coding MGP_C3HHeJ_T0100483.1 MGP_C3HHeJ_G0038677.1 mouse_genomes_project 2 132241127 132241256 + snoRNA snoRNA MGP_C3HHeJ_T0052242.1 MGP_C3HHeJ_G0025078.1 mouse_genomes_project 2 8884911 8885570 - MGP_C3HHeJ_P0052242 Gm17490 protein_coding protein_coding MGP_C3HHeJ_T0055225.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333153 79371554 + MGP_C3HHeJ_P0055225 Ssfa2 protein_coding protein_coding MGP_C3HHeJ_T0055226.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333338 79371554 + MGP_C3HHeJ_P0055226 Ssfa2 protein_coding protein_coding MGP_C3HHeJ_T0055227.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333367 79371554 + MGP_C3HHeJ_P0055227 Ssfa2 protein_coding protein_coding MGP_C3HHeJ_T0055228.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79333373 79334358 + Ssfa2 protein_coding processed_transcript MGP_C3HHeJ_T0055229.1 MGP_C3HHeJ_G0025611.1 mouse_genomes_project 2 79337105 79371554 + Ssfa2 protein_coding processed_transcript MGP_C3HHeJ_T0013458.1 MGP_C3HHeJ_G0011562.1 mouse_genomes_project 2 72675379 72675724 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055462.1 MGP_C3HHeJ_G0025711.1 mouse_genomes_project 2 86785115 86786122 - MGP_C3HHeJ_P0055462 protein_coding protein_coding MGP_C3HHeJ_T0007210.1 MGP_C3HHeJ_G0005908.1 mouse_genomes_project 2 116135823 116367233 + lincRNA lincRNA MGP_C3HHeJ_T0013295.1 MGP_C3HHeJ_G0011399.1 mouse_genomes_project 2 14397924 14398935 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056330.1 MGP_C3HHeJ_G0025990.1 mouse_genomes_project 2 112979346 112980294 + MGP_C3HHeJ_P0056330 Olfr1302 protein_coding protein_coding MGP_C3HHeJ_T0059462.1 MGP_C3HHeJ_G0026727.1 mouse_genomes_project 2 185752115 185761487 - MGP_C3HHeJ_P0059462 Eef1a2 protein_coding protein_coding MGP_C3HHeJ_T0054684.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61616407 61666571 - MGP_C3HHeJ_P0054684 Ifih1 protein_coding protein_coding MGP_C3HHeJ_T0054685.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61618056 61666513 - MGP_C3HHeJ_P0054685 Ifih1 protein_coding protein_coding MGP_C3HHeJ_T0054686.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61628779 61666615 - Ifih1 protein_coding retained_intron MGP_C3HHeJ_T0054687.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61649964 61659830 - Ifih1 protein_coding processed_transcript MGP_C3HHeJ_T0054688.1 MGP_C3HHeJ_G0025504.1 mouse_genomes_project 2 61653999 61666518 - Ifih1 protein_coding retained_intron MGP_C3HHeJ_T0098113.1 MGP_C3HHeJ_G0036325.1 mouse_genomes_project 2 148087742 148087836 + Gm22731 rRNA rRNA MGP_C3HHeJ_T0007134.1 MGP_C3HHeJ_G0005846.1 mouse_genomes_project 2 66390251 66401317 + Gm1322 lincRNA lincRNA MGP_C3HHeJ_T0013329.1 MGP_C3HHeJ_G0011433.1 mouse_genomes_project 2 24465549 24466244 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098107.1 MGP_C3HHeJ_G0036319.1 mouse_genomes_project 2 106807757 106807873 + n-R5s201 rRNA rRNA MGP_C3HHeJ_T0055374.1 MGP_C3HHeJ_G0025647.1 mouse_genomes_project 2 84727208 84730392 + MGP_C3HHeJ_P0055374 Prg2 protein_coding protein_coding MGP_C3HHeJ_T0058780.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168128823 - MGP_C3HHeJ_P0058780 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058781.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168128825 - MGP_C3HHeJ_P0058781 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058782.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168129371 - MGP_C3HHeJ_P0058782 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058783.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168112903 168128823 - MGP_C3HHeJ_P0058783 Matn4 protein_coding protein_coding MGP_C3HHeJ_T0058784.1 MGP_C3HHeJ_G0026566.1 mouse_genomes_project 2 168118211 168128824 - Matn4 protein_coding retained_intron MGP_C3HHeJ_T0054239.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36101771 36598453 - MGP_C3HHeJ_P0054239 Dennd1a protein_coding protein_coding MGP_C3HHeJ_T0054240.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36103852 36155209 - MGP_C3HHeJ_P0054240 Dennd1a protein_coding protein_coding MGP_C3HHeJ_T0054241.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36119698 36598468 - MGP_C3HHeJ_P0054241 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054242.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36241472 36598455 - MGP_C3HHeJ_P0054242 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054243.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36241517 36598266 - MGP_C3HHeJ_P0054243 Dennd1a protein_coding protein_coding MGP_C3HHeJ_T0054244.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36327376 36470036 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0054245.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36347546 36598436 - MGP_C3HHeJ_P0054245 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054246.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36430616 36598296 - MGP_C3HHeJ_P0054246 Dennd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054247.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36463209 36549891 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0054248.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36467692 36471774 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0054249.1 MGP_C3HHeJ_G0025433.1 mouse_genomes_project 2 36543786 36598292 - Dennd1a protein_coding retained_intron MGP_C3HHeJ_T0101174.1 MGP_C3HHeJ_G0039323.1 mouse_genomes_project 2 74391431 74392037 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0052469.1 MGP_C3HHeJ_G0025115.1 mouse_genomes_project 2 16958084 16959923 + MGP_C3HHeJ_P0052469 Ptf1a protein_coding protein_coding MGP_C3HHeJ_T0007350.1 MGP_C3HHeJ_G0006024.1 mouse_genomes_project 2 185403392 185409667 - Gm14340 lincRNA lincRNA MGP_C3HHeJ_T0013523.1 MGP_C3HHeJ_G0011627.1 mouse_genomes_project 2 94282992 94283503 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059155.1 MGP_C3HHeJ_G0026649.1 mouse_genomes_project 2 173657918 173663741 - MGP_C3HHeJ_P0059155 Gm11011 protein_coding protein_coding MGP_C3HHeJ_T0003997.1 MGP_C3HHeJ_G0003542.1 mouse_genomes_project 2 121597268 121599874 - Gm13999 antisense antisense MGP_C3HHeJ_T0013664.1 MGP_C3HHeJ_G0011768.1 mouse_genomes_project 2 153003748 153004743 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056377.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114590593 114991031 + MGP_C3HHeJ_P0056377 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056378.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114590628 114761909 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056379.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114590639 114984135 + MGP_C3HHeJ_P0056379 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056380.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114625219 114983886 + MGP_C3HHeJ_P0056380 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056381.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114704955 114984135 + MGP_C3HHeJ_P0056381 Fmn1 protein_coding protein_coding MGP_C3HHeJ_T0056382.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114956369 114964386 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056383.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114956384 114984132 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056384.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114956384 114984014 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0056385.1 MGP_C3HHeJ_G0026015.1 mouse_genomes_project 2 114982950 114984010 + Fmn1 protein_coding processed_transcript MGP_C3HHeJ_T0004073.1 MGP_C3HHeJ_G0003601.1 mouse_genomes_project 2 164312402 164320385 - Gm27206 antisense antisense MGP_C3HHeJ_T0055452.1 MGP_C3HHeJ_G0025702.1 mouse_genomes_project 2 86399591 86400533 + MGP_C3HHeJ_P0055452 Olfr1076 protein_coding protein_coding MGP_C3HHeJ_T0101898.1 MGP_C3HHeJ_G0039863.1 mouse_genomes_project 2 86378928 86379815 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013731.1 MGP_C3HHeJ_G0011835.1 mouse_genomes_project 2 183529521 183530536 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007278.1 MGP_C3HHeJ_G0005962.1 mouse_genomes_project 2 155776127 155778086 - Gm26841 lincRNA lincRNA MGP_C3HHeJ_T0013490.1 MGP_C3HHeJ_G0011594.1 mouse_genomes_project 2 83342513 83342654 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013408.1 MGP_C3HHeJ_G0011512.1 mouse_genomes_project 2 54918520 54918753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054572.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58791003 58823140 - MGP_C3HHeJ_P0054572 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054573.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58793825 58823103 - MGP_C3HHeJ_P0054573 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054574.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58799962 58801365 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054575.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58799971 58800319 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054576.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58800199 58817398 - MGP_C3HHeJ_P0054576 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054577.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58800326 58802200 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054578.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58801311 58823113 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054579.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58810884 58818720 - MGP_C3HHeJ_P0054579 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054580.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58813590 58818902 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0054581.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58817222 58823142 - MGP_C3HHeJ_P0054581 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054582.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58817223 58823130 - MGP_C3HHeJ_P0054582 Wdsub1 protein_coding protein_coding MGP_C3HHeJ_T0054583.1 MGP_C3HHeJ_G0025489.1 mouse_genomes_project 2 58818887 58823147 - Wdsub1 protein_coding processed_transcript MGP_C3HHeJ_T0007255.1 MGP_C3HHeJ_G0005943.1 mouse_genomes_project 2 138193895 138194878 - Gm14210 lincRNA lincRNA MGP_C3HHeJ_T0007261.1 MGP_C3HHeJ_G0005949.1 mouse_genomes_project 2 146864524 146884430 - lincRNA lincRNA MGP_C3HHeJ_T0007262.1 MGP_C3HHeJ_G0005949.1 mouse_genomes_project 2 146865689 146874262 - lincRNA lincRNA MGP_C3HHeJ_T0057976.1 MGP_C3HHeJ_G0026390.1 mouse_genomes_project 2 155703265 155703987 - MGP_C3HHeJ_P0057976 Defb25 protein_coding protein_coding MGP_C3HHeJ_T0011423.1 MGP_C3HHeJ_G0009556.1 mouse_genomes_project 2 159701545 159701761 + Gm22316 misc_RNA misc_RNA MGP_C3HHeJ_T0007041.1 MGP_C3HHeJ_G0005773.1 mouse_genomes_project 2 2162676 2266738 - Gm26776 lincRNA lincRNA MGP_C3HHeJ_T0057589.1 MGP_C3HHeJ_G0026276.1 mouse_genomes_project 2 138467928 138791521 - MGP_C3HHeJ_P0057589 Pak7 protein_coding protein_coding MGP_C3HHeJ_T0057590.1 MGP_C3HHeJ_G0026276.1 mouse_genomes_project 2 138468721 138791543 - MGP_C3HHeJ_P0057590 Pak7 protein_coding protein_coding MGP_C3HHeJ_T0057591.1 MGP_C3HHeJ_G0026276.1 mouse_genomes_project 2 138664650 138791550 - Pak7 protein_coding retained_intron MGP_C3HHeJ_T0055438.1 MGP_C3HHeJ_G0025688.1 mouse_genomes_project 2 86039657 86042191 - MGP_C3HHeJ_P0055438 Olfr1045 protein_coding protein_coding MGP_C3HHeJ_T0007296.1 MGP_C3HHeJ_G0005977.1 mouse_genomes_project 2 164943316 164944256 + Gm14241 lincRNA lincRNA MGP_C3HHeJ_T0055807.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91895208 91990449 + MGP_C3HHeJ_P0055807 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055808.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91895424 91923390 + Ckap5 protein_coding processed_transcript MGP_C3HHeJ_T0055809.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914302 91933685 + Ckap5 protein_coding retained_intron MGP_C3HHeJ_T0055810.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914304 91990447 + MGP_C3HHeJ_P0055810 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055811.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914304 91990447 + MGP_C3HHeJ_P0055811 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055812.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91914315 91990448 + MGP_C3HHeJ_P0055812 Ckap5 protein_coding protein_coding MGP_C3HHeJ_T0055813.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91923265 91933688 + Ckap5 protein_coding retained_intron MGP_C3HHeJ_T0055814.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91964760 91976330 + Ckap5 protein_coding processed_transcript MGP_C3HHeJ_T0055815.1 MGP_C3HHeJ_G0025872.1 mouse_genomes_project 2 91966083 91970687 + Ckap5 protein_coding retained_intron MGP_C3HHeJ_T0053076.1 MGP_C3HHeJ_G0025226.1 mouse_genomes_project 2 24332448 24382295 + MGP_C3HHeJ_P0053076 Gm20532 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053238.1 MGP_C3HHeJ_G0025258.1 mouse_genomes_project 2 26328502 26328871 + MGP_C3HHeJ_P0053238 Gm10134 protein_coding protein_coding MGP_C3HHeJ_T0013457.1 MGP_C3HHeJ_G0011561.1 mouse_genomes_project 2 72629101 72629900 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013607.1 MGP_C3HHeJ_G0011711.1 mouse_genomes_project 2 132260260 132261580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057972.1 MGP_C3HHeJ_G0026387.1 mouse_genomes_project 2 155652114 155656939 - MGP_C3HHeJ_P0057972 Defb19 protein_coding protein_coding MGP_C3HHeJ_T0007352.1 MGP_C3HHeJ_G0006026.1 mouse_genomes_project 2 185424920 185438223 + Gm14344 lincRNA lincRNA MGP_C3HHeJ_T0054172.1 MGP_C3HHeJ_G0025401.1 mouse_genomes_project 2 34756303 34757245 - MGP_C3HHeJ_P0054172 Olfr341 protein_coding protein_coding MGP_C3HHeJ_T0052426.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15655592 15679494 - MGP_C3HHeJ_P0052426 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052427.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15666271 15873644 - MGP_C3HHeJ_P0052427 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052428.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15669167 15676839 - Dnajc1 protein_coding processed_transcript MGP_C3HHeJ_T0052429.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15673685 15873663 - MGP_C3HHeJ_P0052429 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052430.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15677071 15873475 - MGP_C3HHeJ_P0052430 Dnajc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052431.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15677071 15873253 - MGP_C3HHeJ_P0052431 Dnajc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052432.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15677091 15873254 - MGP_C3HHeJ_P0052432 Dnajc1 protein_coding protein_coding MGP_C3HHeJ_T0052433.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15679467 15769354 - MGP_C3HHeJ_P0052433 Dnajc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052434.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15768975 15772596 - Dnajc1 protein_coding retained_intron MGP_C3HHeJ_T0052435.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15770922 15873657 - Dnajc1 protein_coding processed_transcript MGP_C3HHeJ_T0052436.1 MGP_C3HHeJ_G0025107.1 mouse_genomes_project 2 15780563 15873663 - Dnajc1 protein_coding retained_intron MGP_C3HHeJ_T0004067.1 MGP_C3HHeJ_G0003595.1 mouse_genomes_project 2 159653915 159660942 - Gm14252 antisense antisense MGP_C3HHeJ_T0013274.1 MGP_C3HHeJ_G0011378.1 mouse_genomes_project 2 5244063 5244717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055180.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77043609 77358240 - MGP_C3HHeJ_P0055180 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055181.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77043609 77155427 - MGP_C3HHeJ_P0055181 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055182.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77043609 77340268 - MGP_C3HHeJ_P0055182 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055183.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77044075 77460291 - MGP_C3HHeJ_P0055183 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055184.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77048889 77155423 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055185.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77083860 77340268 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055186.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77106529 77155344 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055187.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77137442 77340375 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055188.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77163033 77460734 - MGP_C3HHeJ_P0055188 Zfp385b protein_coding protein_coding MGP_C3HHeJ_T0055189.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77163784 77198505 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0055190.1 MGP_C3HHeJ_G0025605.1 mouse_genomes_project 2 77460711 77463110 - Zfp385b protein_coding processed_transcript MGP_C3HHeJ_T0053474.1 MGP_C3HHeJ_G0025295.1 mouse_genomes_project 2 28183265 28226971 + MGP_C3HHeJ_P0053474 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058442.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 159939652 160098307 + MGP_C3HHeJ_P0058442 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058443.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 159939652 160098309 + MGP_C3HHeJ_P0058443 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058444.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160027675 160097125 + MGP_C3HHeJ_P0058444 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058445.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160027675 160097120 + MGP_C3HHeJ_P0058445 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058446.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160048757 160082201 + MGP_C3HHeJ_P0058446 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058447.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049216 160096671 + MGP_C3HHeJ_P0058447 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058448.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049230 160097070 + MGP_C3HHeJ_P0058448 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058449.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049231 160096901 + Dlgap4 protein_coding retained_intron MGP_C3HHeJ_T0058450.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049242 160082442 + MGP_C3HHeJ_P0058450 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058451.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049245 160082279 + MGP_C3HHeJ_P0058451 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058452.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049247 160096790 + MGP_C3HHeJ_P0058452 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058453.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049255 160096849 + MGP_C3HHeJ_P0058453 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058454.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160049677 160098309 + MGP_C3HHeJ_P0058454 Dlgap4 protein_coding protein_coding MGP_C3HHeJ_T0058455.1 MGP_C3HHeJ_G0026484.1 mouse_genomes_project 2 160093759 160096725 + Dlgap4 protein_coding processed_transcript MGP_C3HHeJ_T0100452.1 MGP_C3HHeJ_G0038646.1 mouse_genomes_project 2 45176238 45176355 - Gm25264 snoRNA snoRNA MGP_C3HHeJ_T0013617.1 MGP_C3HHeJ_G0011721.1 mouse_genomes_project 2 134159362 134160236 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003891.1 MGP_C3HHeJ_G0003471.1 mouse_genomes_project 2 36596384 36598369 + Gm13556 antisense antisense MGP_C3HHeJ_T0059287.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182603929 182834456 + MGP_C3HHeJ_P0059287 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059288.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182604133 182832455 + MGP_C3HHeJ_P0059288 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059289.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182627327 182832460 + MGP_C3HHeJ_P0059289 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059290.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182661215 182832455 + MGP_C3HHeJ_P0059290 Phactr3 protein_coding protein_coding MGP_C3HHeJ_T0059291.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182823519 182827730 + Phactr3 protein_coding retained_intron MGP_C3HHeJ_T0059292.1 MGP_C3HHeJ_G0026691.1 mouse_genomes_project 2 182823755 182828794 + Phactr3 protein_coding retained_intron MGP_C3HHeJ_T0013683.1 MGP_C3HHeJ_G0011787.1 mouse_genomes_project 2 158826123 158826414 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052344.1 MGP_C3HHeJ_G0025092.1 mouse_genomes_project 2 11198342 11414336 - MGP_C3HHeJ_P0052344 Hacd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052345.1 MGP_C3HHeJ_G0025092.1 mouse_genomes_project 2 11386133 11414167 - MGP_C3HHeJ_P0052345 Hacd1 protein_coding protein_coding MGP_C3HHeJ_T0017533.1 MGP_C3HHeJ_G0015169.1 mouse_genomes_project 2 25812224 25817245 - Gm13372 processed_transcript processed_transcript MGP_C3HHeJ_T0058123.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157529867 157564548 - MGP_C3HHeJ_P0058123 Cdk5rap1 protein_coding protein_coding MGP_C3HHeJ_T0058124.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157529873 157564285 - MGP_C3HHeJ_P0058124 Cdk5rap1 protein_coding protein_coding MGP_C3HHeJ_T0058125.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157536746 157564327 - Cdk5rap1 protein_coding processed_transcript MGP_C3HHeJ_T0058126.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157545820 157549558 - Cdk5rap1 protein_coding retained_intron MGP_C3HHeJ_T0058127.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157551212 157564297 - MGP_C3HHeJ_P0058127 Cdk5rap1 protein_coding protein_coding MGP_C3HHeJ_T0058128.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157557418 157562363 - Cdk5rap1 protein_coding processed_transcript MGP_C3HHeJ_T0058129.1 MGP_C3HHeJ_G0026431.1 mouse_genomes_project 2 157562255 157564257 - Cdk5rap1 protein_coding processed_transcript MGP_C3HHeJ_T0101902.1 MGP_C3HHeJ_G0039867.1 mouse_genomes_project 2 86538966 86545268 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058950.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169141592 169158980 - MGP_C3HHeJ_P0058950 Zfp663 protein_coding protein_coding MGP_C3HHeJ_T0058951.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169141593 169150446 - MGP_C3HHeJ_P0058951 Zfp663 protein_coding protein_coding MGP_C3HHeJ_T0058952.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169144106 169149711 - Zfp663 protein_coding processed_transcript MGP_C3HHeJ_T0058953.1 MGP_C3HHeJ_G0026609.1 mouse_genomes_project 2 169144339 169158974 - MGP_C3HHeJ_P0058953 Zfp663 protein_coding protein_coding MGP_C3HHeJ_T0003815.1 MGP_C3HHeJ_G0003412.1 mouse_genomes_project 2 1452823 1461060 - Gm13175 antisense antisense MGP_C3HHeJ_T0059293.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182841256 182909900 - MGP_C3HHeJ_P0059293 Sycp2 protein_coding protein_coding MGP_C3HHeJ_T0059294.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182842082 182872936 - Sycp2 protein_coding processed_transcript MGP_C3HHeJ_T0059295.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182867395 182873276 - Sycp2 protein_coding retained_intron MGP_C3HHeJ_T0059296.1 MGP_C3HHeJ_G0026692.1 mouse_genomes_project 2 182896296 182909637 - MGP_C3HHeJ_P0059296 Sycp2 protein_coding protein_coding MGP_C3HHeJ_T0010285.1 MGP_C3HHeJ_G0008418.1 mouse_genomes_project 2 7720228 7720318 + Gm24806 miRNA miRNA MGP_C3HHeJ_T0100440.1 MGP_C3HHeJ_G0038634.1 mouse_genomes_project 2 29195378 29195502 + Gm22516 snoRNA snoRNA MGP_C3HHeJ_T0058553.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161420958 161470757 - MGP_C3HHeJ_P0058553 Tti1 protein_coding protein_coding MGP_C3HHeJ_T0058554.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161420967 161448488 - MGP_C3HHeJ_P0058554 Tti1 protein_coding protein_coding MGP_C3HHeJ_T0058555.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161434434 161446338 - Tti1 protein_coding processed_transcript MGP_C3HHeJ_T0058556.1 MGP_C3HHeJ_G0026504.1 mouse_genomes_project 2 161447895 161451358 - MGP_C3HHeJ_P0058556 Tti1 protein_coding protein_coding MGP_C3HHeJ_T0055577.1 MGP_C3HHeJ_G0025810.1 mouse_genomes_project 2 89309951 89310887 - MGP_C3HHeJ_P0055577 Olfr1223 protein_coding protein_coding MGP_C3HHeJ_T0057239.1 MGP_C3HHeJ_G0026201.1 mouse_genomes_project 2 131188439 131219598 + MGP_C3HHeJ_P0057239 Ttl protein_coding protein_coding MGP_C3HHeJ_T0057240.1 MGP_C3HHeJ_G0026201.1 mouse_genomes_project 2 131188482 131190603 + Ttl protein_coding processed_transcript MGP_C3HHeJ_T0057241.1 MGP_C3HHeJ_G0026201.1 mouse_genomes_project 2 131198564 131213041 + MGP_C3HHeJ_P0057241 Ttl protein_coding protein_coding MGP_C3HHeJ_T0054236.1 MGP_C3HHeJ_G0025432.1 mouse_genomes_project 2 36076430 36101884 + MGP_C3HHeJ_P0054236 Crb2 protein_coding protein_coding MGP_C3HHeJ_T0054237.1 MGP_C3HHeJ_G0025432.1 mouse_genomes_project 2 36092648 36095001 + MGP_C3HHeJ_P0054237 Crb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054238.1 MGP_C3HHeJ_G0025432.1 mouse_genomes_project 2 36097947 36099397 + Crb2 protein_coding processed_transcript MGP_C3HHeJ_T0003821.1 MGP_C3HHeJ_G0003416.1 mouse_genomes_project 2 3223014 3357096 + A230108P19Rik antisense antisense MGP_C3HHeJ_T0059536.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108514 186126473 + MGP_C3HHeJ_P0059536 Tpd52l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059537.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108536 186119645 + Tpd52l2 protein_coding processed_transcript MGP_C3HHeJ_T0059538.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108537 186129324 + MGP_C3HHeJ_P0059538 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059539.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108553 186128729 + MGP_C3HHeJ_P0059539 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059540.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108555 186126484 + MGP_C3HHeJ_P0059540 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059541.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108559 186129320 + MGP_C3HHeJ_P0059541 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059542.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108571 186127614 + MGP_C3HHeJ_P0059542 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059543.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108601 186113935 + Tpd52l2 protein_coding retained_intron MGP_C3HHeJ_T0059544.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186108603 186126745 + MGP_C3HHeJ_P0059544 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059545.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186111225 186124413 + MGP_C3HHeJ_P0059545 Tpd52l2 protein_coding protein_coding MGP_C3HHeJ_T0059546.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186111246 186114531 + Tpd52l2 protein_coding retained_intron MGP_C3HHeJ_T0059547.1 MGP_C3HHeJ_G0026742.1 mouse_genomes_project 2 186123934 186126691 + Tpd52l2 protein_coding retained_intron MGP_C3HHeJ_T0013640.1 MGP_C3HHeJ_G0011744.1 mouse_genomes_project 2 146046465 146046615 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010335.1 MGP_C3HHeJ_G0008468.1 mouse_genomes_project 2 72435962 72436087 - Gm25960 miRNA miRNA MGP_C3HHeJ_T0058504.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160592301 160681551 - MGP_C3HHeJ_P0058504 Mroh8 protein_coding protein_coding MGP_C3HHeJ_T0058505.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160594445 160680833 - MGP_C3HHeJ_P0058505 Mroh8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0058506.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160606221 160607635 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0058507.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160637475 160681291 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0058508.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160650797 160654778 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0058509.1 MGP_C3HHeJ_G0026495.1 mouse_genomes_project 2 160666256 160681551 - Mroh8 protein_coding processed_transcript MGP_C3HHeJ_T0007106.1 MGP_C3HHeJ_G0005821.1 mouse_genomes_project 2 43677576 43690516 + Gm28643 lincRNA lincRNA MGP_C3HHeJ_T0010262.1 MGP_C3HHeJ_G0008395.1 mouse_genomes_project 2 7695221 7695325 + Mir297a-2 miRNA miRNA MGP_C3HHeJ_T0010371.1 MGP_C3HHeJ_G0008504.1 mouse_genomes_project 2 131044657 131044763 - Gm22859 miRNA miRNA MGP_C3HHeJ_T0017517.1 MGP_C3HHeJ_G0015160.1 mouse_genomes_project 2 16247279 16265451 - Gm20539 processed_transcript processed_transcript MGP_C3HHeJ_T0011428.1 MGP_C3HHeJ_G0009561.1 mouse_genomes_project 2 170966152 170966341 + Gm27494 misc_RNA misc_RNA MGP_C3HHeJ_T0053837.1 MGP_C3HHeJ_G0025345.1 mouse_genomes_project 2 30676276 30677777 - MGP_C3HHeJ_P0053837 9430097D07Rik protein_coding protein_coding MGP_C3HHeJ_T0055619.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204696 90209783 + MGP_C3HHeJ_P0055619 Olfr1260 protein_coding protein_coding MGP_C3HHeJ_T0055620.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204703 90209263 + Olfr1260 protein_coding processed_transcript MGP_C3HHeJ_T0055621.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204706 90209213 + MGP_C3HHeJ_P0055621 Olfr1260 protein_coding protein_coding MGP_C3HHeJ_T0055622.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90204712 90209270 + Olfr1260 protein_coding processed_transcript MGP_C3HHeJ_T0055623.1 MGP_C3HHeJ_G0025840.1 mouse_genomes_project 2 90208850 90209783 + MGP_C3HHeJ_P0055623 Olfr1260 protein_coding protein_coding MGP_C3HHeJ_T0053350.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687029 27698611 + MGP_C3HHeJ_P0053350 Coq4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053351.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687756 27697269 + MGP_C3HHeJ_P0053351 Coq4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053352.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687795 27698410 + MGP_C3HHeJ_P0053352 Coq4 protein_coding protein_coding MGP_C3HHeJ_T0053353.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27687807 27696669 + MGP_C3HHeJ_P0053353 Coq4 protein_coding protein_coding MGP_C3HHeJ_T0053354.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27689513 27690175 + Coq4 protein_coding retained_intron MGP_C3HHeJ_T0053355.1 MGP_C3HHeJ_G0025278.1 mouse_genomes_project 2 27696231 27697653 + Coq4 protein_coding retained_intron MGP_C3HHeJ_T0056800.1 MGP_C3HHeJ_G0026103.1 mouse_genomes_project 2 122793648 122803984 - MGP_C3HHeJ_P0056800 Zscan29 protein_coding protein_coding MGP_C3HHeJ_T0056801.1 MGP_C3HHeJ_G0026103.1 mouse_genomes_project 2 122793648 122802983 - MGP_C3HHeJ_P0056801 Zscan29 protein_coding protein_coding MGP_C3HHeJ_T0056802.1 MGP_C3HHeJ_G0026103.1 mouse_genomes_project 2 122794434 122797373 - Zscan29 protein_coding retained_intron MGP_C3HHeJ_T0054947.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70785913 70840157 + MGP_C3HHeJ_P0054947 Hat1 protein_coding protein_coding MGP_C3HHeJ_T0054948.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70786215 70840157 + MGP_C3HHeJ_P0054948 Hat1 protein_coding protein_coding MGP_C3HHeJ_T0054949.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70805860 70808833 + Hat1 protein_coding processed_transcript MGP_C3HHeJ_T0054950.1 MGP_C3HHeJ_G0025554.1 mouse_genomes_project 2 70817845 70837346 + Hat1 protein_coding processed_transcript MGP_C3HHeJ_T0013288.1 MGP_C3HHeJ_G0011392.1 mouse_genomes_project 2 12105451 12106442 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055479.1 MGP_C3HHeJ_G0025727.1 mouse_genomes_project 2 87203131 87204088 + MGP_C3HHeJ_P0055479 Olfr1112 protein_coding protein_coding MGP_C3HHeJ_T0007232.1 MGP_C3HHeJ_G0005924.1 mouse_genomes_project 2 121136384 121142870 + 1700020I14Rik lincRNA lincRNA MGP_C3HHeJ_T0007233.1 MGP_C3HHeJ_G0005924.1 mouse_genomes_project 2 121136390 121149615 + 1700020I14Rik lincRNA lincRNA MGP_C3HHeJ_T0017597.1 MGP_C3HHeJ_G0015211.1 mouse_genomes_project 2 104529993 104537227 - 4930547E08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0055267.1 MGP_C3HHeJ_G0025622.1 mouse_genomes_project 2 82775983 82842332 + MGP_C3HHeJ_P0055267 Fsip2 protein_coding protein_coding MGP_C3HHeJ_T0055268.1 MGP_C3HHeJ_G0025622.1 mouse_genomes_project 2 82781848 82797900 + MGP_C3HHeJ_P0055268 Fsip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055269.1 MGP_C3HHeJ_G0025622.1 mouse_genomes_project 2 82813989 82842332 + MGP_C3HHeJ_P0055269 Fsip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100464.1 MGP_C3HHeJ_G0038658.1 mouse_genomes_project 2 80451296 80451423 + Gm25420 snoRNA snoRNA MGP_C3HHeJ_T0007058.1 MGP_C3HHeJ_G0005786.1 mouse_genomes_project 2 8582843 8587467 + Gm13293 lincRNA lincRNA MGP_C3HHeJ_T0052589.1 MGP_C3HHeJ_G0025139.1 mouse_genomes_project 2 21866252 21876729 - MGP_C3HHeJ_P0052589 protein_coding protein_coding MGP_C3HHeJ_T0000996.1 MGP_C3HHeJ_G0000933.1 mouse_genomes_project 2 8457364 8459929 + TEC TEC MGP_C3HHeJ_T0101896.1 MGP_C3HHeJ_G0039861.1 mouse_genomes_project 2 85973105 85974062 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058470.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160292391 160363698 - MGP_C3HHeJ_P0058470 Ndrg3 protein_coding protein_coding MGP_C3HHeJ_T0058471.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160292391 160363711 - MGP_C3HHeJ_P0058471 Ndrg3 protein_coding protein_coding MGP_C3HHeJ_T0058472.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160293449 160314198 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058473.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160296198 160299911 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058474.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160299208 160363690 - MGP_C3HHeJ_P0058474 Ndrg3 protein_coding protein_coding MGP_C3HHeJ_T0058475.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160310956 160324353 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058476.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160316149 160363655 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058477.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160319220 160363582 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0058478.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160328069 160363702 - Ndrg3 protein_coding retained_intron MGP_C3HHeJ_T0058479.1 MGP_C3HHeJ_G0026489.1 mouse_genomes_project 2 160341679 160363651 - Ndrg3 protein_coding processed_transcript MGP_C3HHeJ_T0013671.1 MGP_C3HHeJ_G0011775.1 mouse_genomes_project 2 154843124 154844263 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054763.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65662504 65832190 - MGP_C3HHeJ_P0054763 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054764.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65662504 65832190 - MGP_C3HHeJ_P0054764 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054765.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65664510 65831891 - MGP_C3HHeJ_P0054765 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054766.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65664510 65831891 - MGP_C3HHeJ_P0054766 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054767.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65665532 65831891 - MGP_C3HHeJ_P0054767 Scn9a protein_coding protein_coding MGP_C3HHeJ_T0054768.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65726102 65729263 - Scn9a protein_coding retained_intron MGP_C3HHeJ_T0054769.1 MGP_C3HHeJ_G0025517.1 mouse_genomes_project 2 65750701 65832200 - Scn9a protein_coding retained_intron MGP_C3HHeJ_T0100459.1 MGP_C3HHeJ_G0038653.1 mouse_genomes_project 2 60490334 60490463 + Gm22338 snoRNA snoRNA MGP_C3HHeJ_T0017650.1 MGP_C3HHeJ_G0015232.1 mouse_genomes_project 2 131432343 131442952 + Gm14023 processed_transcript processed_transcript MGP_C3HHeJ_T0013411.1 MGP_C3HHeJ_G0011515.1 mouse_genomes_project 2 56152781 56157022 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010247.1 MGP_C3HHeJ_G0008380.1 mouse_genomes_project 2 35095 35202 + Gm27306 miRNA miRNA MGP_C3HHeJ_T0007187.1 MGP_C3HHeJ_G0005888.1 mouse_genomes_project 2 95221053 95222779 - Gm13793 lincRNA lincRNA MGP_C3HHeJ_T0003911.1 MGP_C3HHeJ_G0003485.1 mouse_genomes_project 2 61370157 61485723 + Gm13561 antisense antisense MGP_C3HHeJ_T0055270.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426683 83440533 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055271.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426739 83435758 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055272.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426825 83442419 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055273.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426855 83446510 + MGP_C3HHeJ_P0055273 Zc3h15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055274.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83426855 83447395 + MGP_C3HHeJ_P0055274 Zc3h15 protein_coding protein_coding MGP_C3HHeJ_T0055275.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83438848 83440296 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0055276.1 MGP_C3HHeJ_G0025623.1 mouse_genomes_project 2 83439341 83443770 + Zc3h15 protein_coding processed_transcript MGP_C3HHeJ_T0010302.1 MGP_C3HHeJ_G0008435.1 mouse_genomes_project 2 25161899 25161999 + Gm24049 miRNA miRNA MGP_C3HHeJ_T0007308.1 MGP_C3HHeJ_G0005989.1 mouse_genomes_project 2 170243137 170261230 - Gm14268 lincRNA lincRNA MGP_C3HHeJ_T0007309.1 MGP_C3HHeJ_G0005989.1 mouse_genomes_project 2 170243423 170261260 - Gm14268 lincRNA lincRNA MGP_C3HHeJ_T0004056.1 MGP_C3HHeJ_G0003585.1 mouse_genomes_project 2 155623235 155627529 - Gm14161 antisense antisense MGP_C3HHeJ_T0057045.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127833296 127834476 + Galk2 protein_coding processed_transcript MGP_C3HHeJ_T0057046.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127833321 127963681 + MGP_C3HHeJ_P0057046 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057047.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127833335 127869579 + MGP_C3HHeJ_P0057047 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057048.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840242 127962969 + MGP_C3HHeJ_P0057048 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057049.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840242 127905475 + MGP_C3HHeJ_P0057049 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057050.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840380 127887021 + Galk2 protein_coding processed_transcript MGP_C3HHeJ_T0057051.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840387 127872802 + MGP_C3HHeJ_P0057051 Galk2 protein_coding protein_coding MGP_C3HHeJ_T0057052.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840391 127905531 + MGP_C3HHeJ_P0057052 Galk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057053.1 MGP_C3HHeJ_G0026154.1 mouse_genomes_project 2 127840405 127929627 + Galk2 protein_coding retained_intron MGP_C3HHeJ_T0057946.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155378304 155384968 - Rbck1 protein_coding retained_intron MGP_C3HHeJ_T0057947.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155378304 155394384 - MGP_C3HHeJ_P0057947 Rbck1 protein_coding protein_coding MGP_C3HHeJ_T0057948.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155378304 155394625 - MGP_C3HHeJ_P0057948 Rbck1 protein_coding protein_coding MGP_C3HHeJ_T0057949.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155380282 155385469 - Rbck1 protein_coding retained_intron MGP_C3HHeJ_T0057950.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155380750 155386335 - MGP_C3HHeJ_P0057950 Rbck1 protein_coding protein_coding MGP_C3HHeJ_T0057951.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155384908 155386587 - Rbck1 protein_coding retained_intron MGP_C3HHeJ_T0057952.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155386510 155389728 - Rbck1 protein_coding processed_transcript MGP_C3HHeJ_T0057953.1 MGP_C3HHeJ_G0026373.1 mouse_genomes_project 2 155388374 155394356 - Rbck1 protein_coding processed_transcript MGP_C3HHeJ_T0013268.1 MGP_C3HHeJ_G0011372.1 mouse_genomes_project 2 1835960 1836437 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007177.1 MGP_C3HHeJ_G0005882.1 mouse_genomes_project 2 92913186 92959869 + Gm13814 lincRNA lincRNA MGP_C3HHeJ_T0055451.1 MGP_C3HHeJ_G0025701.1 mouse_genomes_project 2 86372389 86373358 - MGP_C3HHeJ_P0055451 Olfr228 protein_coding protein_coding MGP_C3HHeJ_T0057668.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146642809 146648463 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057669.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146642809 146706340 - MGP_C3HHeJ_P0057669 Rrbp1 protein_coding protein_coding MGP_C3HHeJ_T0057670.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146643542 146645151 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057671.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146645906 146651364 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057672.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146652564 146653827 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057673.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146656693 146663581 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057674.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146660826 146679048 - Rrbp1 protein_coding processed_transcript MGP_C3HHeJ_T0057675.1 MGP_C3HHeJ_G0026298.1 mouse_genomes_project 2 146681735 146706340 - MGP_C3HHeJ_P0057675 Rrbp1 protein_coding protein_coding MGP_C3HHeJ_T0058279.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153394 159238801 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058280.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153394 159238801 - MGP_C3HHeJ_P0058280 Uqcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058281.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153396 159238784 - MGP_C3HHeJ_P0058281 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058282.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153396 159238777 - MGP_C3HHeJ_P0058282 Uqcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058283.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159153421 159239051 - MGP_C3HHeJ_P0058283 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058284.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154437 159238759 - MGP_C3HHeJ_P0058284 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058285.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154674 159158190 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058286.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154731 159238785 - MGP_C3HHeJ_P0058286 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058287.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154750 159239051 - MGP_C3HHeJ_P0058287 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058288.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159154941 159238773 - MGP_C3HHeJ_P0058288 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058289.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159157400 159239004 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058290.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159157864 159238784 - MGP_C3HHeJ_P0058290 Uqcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058291.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159164313 159238791 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058292.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159177480 159238797 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058293.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159194605 159238801 - MGP_C3HHeJ_P0058293 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0058294.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159194617 159219409 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058295.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159194624 159239017 - Uqcc1 protein_coding processed_transcript MGP_C3HHeJ_T0058296.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159216773 159238787 - Uqcc1 protein_coding retained_intron MGP_C3HHeJ_T0058297.1 MGP_C3HHeJ_G0026465.1 mouse_genomes_project 2 159218168 159238791 - MGP_C3HHeJ_P0058297 Uqcc1 protein_coding protein_coding MGP_C3HHeJ_T0003839.1 MGP_C3HHeJ_G0003432.1 mouse_genomes_project 2 17961826 17965065 - antisense antisense MGP_C3HHeJ_T0055470.1 MGP_C3HHeJ_G0025718.1 mouse_genomes_project 2 86980258 86981233 + MGP_C3HHeJ_P0055470 Olfr1102 protein_coding protein_coding MGP_C3HHeJ_T0003824.1 MGP_C3HHeJ_G0003419.1 mouse_genomes_project 2 7062487 7064092 + Gm13256 antisense antisense MGP_C3HHeJ_T0101912.1 MGP_C3HHeJ_G0039877.1 mouse_genomes_project 2 88203948 88204899 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013539.1 MGP_C3HHeJ_G0011643.1 mouse_genomes_project 2 101076473 101077820 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013667.1 MGP_C3HHeJ_G0011771.1 mouse_genomes_project 2 153896045 153896402 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010256.1 MGP_C3HHeJ_G0008389.1 mouse_genomes_project 2 7691336 7691440 + Gm23578 miRNA miRNA MGP_C3HHeJ_T0010255.1 MGP_C3HHeJ_G0008388.1 mouse_genomes_project 2 7691057 7691154 + Mir669b miRNA miRNA MGP_C3HHeJ_T0007128.1 MGP_C3HHeJ_G0005840.1 mouse_genomes_project 2 59957278 59967986 - Gm13582 lincRNA lincRNA MGP_C3HHeJ_T0098396.1 MGP_C3HHeJ_G0036602.1 mouse_genomes_project 2 18478055 18487594 - Gm13380 sense_intronic sense_intronic MGP_C3HHeJ_T0055291.1 MGP_C3HHeJ_G0025627.1 mouse_genomes_project 2 83746022 83749712 + MGP_C3HHeJ_P0055291 protein_coding protein_coding MGP_C3HHeJ_T0056545.1 MGP_C3HHeJ_G0026055.1 mouse_genomes_project 2 120690221 120693279 + MGP_C3HHeJ_P0056545 Gm14137 protein_coding protein_coding MGP_C3HHeJ_T0001027.1 MGP_C3HHeJ_G0000964.1 mouse_genomes_project 2 22500974 22502772 - TEC TEC MGP_C3HHeJ_T0007285.1 MGP_C3HHeJ_G0005968.1 mouse_genomes_project 2 159940394 159941406 - Gm14174 lincRNA lincRNA MGP_C3HHeJ_T0011409.1 MGP_C3HHeJ_G0009542.1 mouse_genomes_project 2 78202406 78202636 - Gm23149 misc_RNA misc_RNA MGP_C3HHeJ_T0059469.1 MGP_C3HHeJ_G0026729.1 mouse_genomes_project 2 185794119 185803171 - MGP_C3HHeJ_P0059469 Ptk6 protein_coding protein_coding MGP_C3HHeJ_T0059191.1 MGP_C3HHeJ_G0026663.1 mouse_genomes_project 2 176654672 176685598 + MGP_C3HHeJ_P0059191 Rtfdc1 protein_coding protein_coding MGP_C3HHeJ_T0059192.1 MGP_C3HHeJ_G0026663.1 mouse_genomes_project 2 176654718 176680759 + Rtfdc1 protein_coding retained_intron MGP_C3HHeJ_T0059195.1 MGP_C3HHeJ_G0026663.1 mouse_genomes_project 2 176667075 176685598 + Rtfdc1 protein_coding processed_transcript MGP_C3HHeJ_T0003866.1 MGP_C3HHeJ_G0003450.1 mouse_genomes_project 2 27221237 27268443 - Gm13402 antisense antisense MGP_C3HHeJ_T0059076.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171408792 171421851 - MGP_C3HHeJ_P0059076 Spata2 protein_coding protein_coding MGP_C3HHeJ_T0059077.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171409095 171421809 - MGP_C3HHeJ_P0059077 Spata2 protein_coding protein_coding MGP_C3HHeJ_T0059078.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171412411 171413722 - Spata2 protein_coding retained_intron MGP_C3HHeJ_T0059079.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171413246 171421836 - Spata2 protein_coding processed_transcript MGP_C3HHeJ_T0059080.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171413297 171421809 - Spata2 protein_coding processed_transcript MGP_C3HHeJ_T0059081.1 MGP_C3HHeJ_G0026631.1 mouse_genomes_project 2 171413404 171421842 - Spata2 protein_coding processed_transcript MGP_C3HHeJ_T0057975.1 MGP_C3HHeJ_G0026389.1 mouse_genomes_project 2 155681909 155693286 + MGP_C3HHeJ_P0057975 Defb36 protein_coding protein_coding MGP_C3HHeJ_T0058548.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161164313 161324348 + MGP_C3HHeJ_P0058548 Ctnnbl1 protein_coding protein_coding MGP_C3HHeJ_T0058549.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161220602 161239588 + Ctnnbl1 protein_coding processed_transcript MGP_C3HHeJ_T0058550.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161222018 161250669 + Ctnnbl1 protein_coding processed_transcript MGP_C3HHeJ_T0058551.1 MGP_C3HHeJ_G0026502.1 mouse_genomes_project 2 161222051 161266562 + Ctnnbl1 protein_coding processed_transcript MGP_C3HHeJ_T0099221.1 MGP_C3HHeJ_G0037415.1 mouse_genomes_project 2 142127828 142127932 + Gm27385 snRNA snRNA MGP_C3HHeJ_T0007108.1 MGP_C3HHeJ_G0005823.1 mouse_genomes_project 2 44238729 44240535 + 1700019E08Rik lincRNA lincRNA MGP_C3HHeJ_T0007109.1 MGP_C3HHeJ_G0005823.1 mouse_genomes_project 2 44238924 44240154 + 1700019E08Rik lincRNA lincRNA MGP_C3HHeJ_T0057918.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154754690 154779987 - MGP_C3HHeJ_P0057918 Psmf1 protein_coding protein_coding MGP_C3HHeJ_T0057919.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154754940 154759874 - Psmf1 protein_coding retained_intron MGP_C3HHeJ_T0057920.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154754940 154779970 - MGP_C3HHeJ_P0057920 Psmf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057921.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154757143 154782863 - MGP_C3HHeJ_P0057921 Psmf1 protein_coding protein_coding MGP_C3HHeJ_T0057922.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154758363 154768808 - Psmf1 protein_coding retained_intron MGP_C3HHeJ_T0057923.1 MGP_C3HHeJ_G0026363.1 mouse_genomes_project 2 154766324 154779970 - Psmf1 protein_coding retained_intron MGP_C3HHeJ_T0007087.1 MGP_C3HHeJ_G0005807.1 mouse_genomes_project 2 28595711 28657428 + 9330198N18Rik lincRNA lincRNA MGP_C3HHeJ_T0007172.1 MGP_C3HHeJ_G0005877.1 mouse_genomes_project 2 84979801 84991393 + Gm13715 lincRNA lincRNA MGP_C3HHeJ_T0013496.1 MGP_C3HHeJ_G0011600.1 mouse_genomes_project 2 86205652 86208581 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013732.1 MGP_C3HHeJ_G0011836.1 mouse_genomes_project 2 183752710 183753281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013468.1 MGP_C3HHeJ_G0011572.1 mouse_genomes_project 2 77602308 77603102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053915.1 MGP_C3HHeJ_G0025358.1 mouse_genomes_project 2 30890785 30897833 - MGP_C3HHeJ_P0053915 Cfap157 protein_coding protein_coding MGP_C3HHeJ_T0053916.1 MGP_C3HHeJ_G0025358.1 mouse_genomes_project 2 30891619 30892551 - Cfap157 protein_coding retained_intron MGP_C3HHeJ_T0000998.1 MGP_C3HHeJ_G0000935.1 mouse_genomes_project 2 8604000 8606174 - TEC TEC MGP_C3HHeJ_T0056107.1 MGP_C3HHeJ_G0025926.1 mouse_genomes_project 2 104285734 104437831 + MGP_C3HHeJ_P0056107 Abtb2 protein_coding protein_coding MGP_C3HHeJ_T0056108.1 MGP_C3HHeJ_G0025926.1 mouse_genomes_project 2 104434442 104436625 + Abtb2 protein_coding processed_transcript MGP_C3HHeJ_T0056109.1 MGP_C3HHeJ_G0025926.1 mouse_genomes_project 2 104434488 104437831 + Abtb2 protein_coding processed_transcript MGP_C3HHeJ_T0013449.1 MGP_C3HHeJ_G0011553.1 mouse_genomes_project 2 70809413 70809794 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056159.1 MGP_C3HHeJ_G0025935.1 mouse_genomes_project 2 104830106 104847333 + Cd59a protein_coding processed_transcript MGP_C3HHeJ_T0056160.1 MGP_C3HHeJ_G0025935.1 mouse_genomes_project 2 104830106 104848380 + MGP_C3HHeJ_P0056160 Cd59a protein_coding protein_coding MGP_C3HHeJ_T0053833.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30672950 30675672 + MGP_C3HHeJ_P0053833 Dpm2 protein_coding protein_coding MGP_C3HHeJ_T0053834.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30672950 30675656 + MGP_C3HHeJ_P0053834 Dpm2 protein_coding protein_coding MGP_C3HHeJ_T0053835.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30672959 30675174 + Dpm2 protein_coding retained_intron MGP_C3HHeJ_T0053836.1 MGP_C3HHeJ_G0025344.1 mouse_genomes_project 2 30674139 30675549 + Dpm2 protein_coding retained_intron MGP_C3HHeJ_T0055724.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459307 91477680 + MGP_C3HHeJ_P0055724 Mybpc3 protein_coding protein_coding MGP_C3HHeJ_T0055725.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459307 91477674 + MGP_C3HHeJ_P0055725 Mybpc3 protein_coding protein_coding MGP_C3HHeJ_T0055726.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459307 91477674 + MGP_C3HHeJ_P0055726 Mybpc3 protein_coding protein_coding MGP_C3HHeJ_T0055727.1 MGP_C3HHeJ_G0025863.1 mouse_genomes_project 2 91459332 91477681 + MGP_C3HHeJ_P0055727 Mybpc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003922.1 MGP_C3HHeJ_G0003495.1 mouse_genomes_project 2 67751886 67753556 + Gm13596 antisense antisense MGP_C3HHeJ_T0013365.1 MGP_C3HHeJ_G0011469.1 mouse_genomes_project 2 37889521 37890004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052581.1 MGP_C3HHeJ_G0025135.1 mouse_genomes_project 2 21582425 21631099 - MGP_C3HHeJ_P0052581 Hnmt protein_coding protein_coding MGP_C3HHeJ_T0052582.1 MGP_C3HHeJ_G0025135.1 mouse_genomes_project 2 21582455 21630789 - MGP_C3HHeJ_P0052582 Hnmt protein_coding protein_coding MGP_C3HHeJ_T0052583.1 MGP_C3HHeJ_G0025135.1 mouse_genomes_project 2 21583044 21630576 - MGP_C3HHeJ_P0052583 Hnmt protein_coding protein_coding MGP_C3HHeJ_T0013720.1 MGP_C3HHeJ_G0011824.1 mouse_genomes_project 2 171531034 171531510 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053095.1 MGP_C3HHeJ_G0025228.1 mouse_genomes_project 2 24375117 24383158 + MGP_C3HHeJ_P0053095 Fam69b protein_coding protein_coding MGP_C3HHeJ_T0053096.1 MGP_C3HHeJ_G0025228.1 mouse_genomes_project 2 24375154 24379668 + Fam69b protein_coding processed_transcript MGP_C3HHeJ_T0053097.1 MGP_C3HHeJ_G0025228.1 mouse_genomes_project 2 24380863 24381686 + Fam69b protein_coding processed_transcript MGP_C3HHeJ_T0057481.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134195885 134201183 + MGP_C3HHeJ_P0057481 protein_coding protein_coding MGP_C3HHeJ_T0057482.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134195886 134201183 + MGP_C3HHeJ_P0057482 protein_coding protein_coding MGP_C3HHeJ_T0057483.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134195886 134201183 + MGP_C3HHeJ_P0057483 protein_coding protein_coding MGP_C3HHeJ_T0057484.1 MGP_C3HHeJ_G0026255.1 mouse_genomes_project 2 134196061 134201183 + MGP_C3HHeJ_P0057484 protein_coding protein_coding MGP_C3HHeJ_T0055632.1 MGP_C3HHeJ_G0025848.1 mouse_genomes_project 2 90396146 90397061 - MGP_C3HHeJ_P0055632 Olfr1270 protein_coding protein_coding MGP_C3HHeJ_T0058639.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164317183 164446490 - Zhx3 protein_coding processed_transcript MGP_C3HHeJ_T0058647.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164333660 164446064 - MGP_C3HHeJ_P0058647 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058648.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164334257 164427678 - MGP_C3HHeJ_P0058648 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058649.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164338911 164446482 - MGP_C3HHeJ_P0058649 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058650.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164350572 164446321 - MGP_C3HHeJ_P0058650 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0058651.1 MGP_C3HHeJ_G0026524.1 mouse_genomes_project 2 164350609 164446482 - MGP_C3HHeJ_P0058651 Zhx3 protein_coding protein_coding MGP_C3HHeJ_T0013453.1 MGP_C3HHeJ_G0011557.1 mouse_genomes_project 2 72037109 72037451 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056817.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122826770 122845374 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056818.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122828328 122906169 - MGP_C3HHeJ_P0056818 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056819.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122828328 122906103 - MGP_C3HHeJ_P0056819 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056820.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122831736 122869076 - MGP_C3HHeJ_P0056820 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056821.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122833124 122838393 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056822.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122836112 122841159 - MGP_C3HHeJ_P0056822 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056823.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122838492 122841975 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056824.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122841820 122854598 - MGP_C3HHeJ_P0056824 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056825.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122842245 122854589 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056826.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122844700 122851808 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056827.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122849295 122854736 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056828.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122849531 122906083 - MGP_C3HHeJ_P0056828 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056829.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122861490 122868759 - MGP_C3HHeJ_P0056829 Trp53bp1 protein_coding protein_coding MGP_C3HHeJ_T0056830.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122865161 122868891 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056831.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122869893 122886061 - MGP_C3HHeJ_P0056831 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056832.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122890554 122906131 - Trp53bp1 protein_coding processed_transcript MGP_C3HHeJ_T0056833.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122893859 122905048 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056834.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122902074 122906123 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0056835.1 MGP_C3HHeJ_G0026105.1 mouse_genomes_project 2 122904391 122906132 - Trp53bp1 protein_coding retained_intron MGP_C3HHeJ_T0010381.1 MGP_C3HHeJ_G0008514.1 mouse_genomes_project 2 155018091 155018180 - Mir1953 miRNA miRNA MGP_C3HHeJ_T0054727.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64602450 64723697 - MGP_C3HHeJ_P0054727 protein_coding protein_coding MGP_C3HHeJ_T0054728.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64603595 64724548 - MGP_C3HHeJ_P0054728 protein_coding protein_coding MGP_C3HHeJ_T0054729.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64642651 64648825 - protein_coding processed_transcript MGP_C3HHeJ_T0054730.1 MGP_C3HHeJ_G0025511.1 mouse_genomes_project 2 64680478 64685379 - MGP_C3HHeJ_P0054730 protein_coding protein_coding MGP_C3HHeJ_T0055681.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91236864 91242642 + MGP_C3HHeJ_P0055681 Kbtbd4 protein_coding protein_coding MGP_C3HHeJ_T0055682.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91236867 91242642 + MGP_C3HHeJ_P0055682 Kbtbd4 protein_coding protein_coding MGP_C3HHeJ_T0055683.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91236893 91237742 + Kbtbd4 protein_coding processed_transcript MGP_C3HHeJ_T0055684.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91237199 91238178 + Kbtbd4 protein_coding processed_transcript MGP_C3HHeJ_T0055685.1 MGP_C3HHeJ_G0025857.1 mouse_genomes_project 2 91241244 91243707 + Kbtbd4 protein_coding processed_transcript MGP_C3HHeJ_T0007056.1 MGP_C3HHeJ_G0005784.1 mouse_genomes_project 2 8558528 8563050 - Gm38171 lincRNA lincRNA MGP_C3HHeJ_T0017626.1 MGP_C3HHeJ_G0015223.1 mouse_genomes_project 2 121824203 121824878 - Gm13997 processed_transcript processed_transcript MGP_C3HHeJ_T0013270.1 MGP_C3HHeJ_G0011374.1 mouse_genomes_project 2 1968698 1968923 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056719.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178015 122214127 + MGP_C3HHeJ_P0056719 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056720.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178035 122214127 + MGP_C3HHeJ_P0056720 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056721.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178041 122214127 + MGP_C3HHeJ_P0056721 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056722.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178065 122209638 + MGP_C3HHeJ_P0056722 Snap23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056723.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178067 122197815 + Snap23 protein_coding retained_intron MGP_C3HHeJ_T0056724.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178067 122199136 + MGP_C3HHeJ_P0056724 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056725.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122178082 122209551 + MGP_C3HHeJ_P0056725 Snap23 protein_coding protein_coding MGP_C3HHeJ_T0056726.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122199109 122208270 + Snap23 protein_coding retained_intron MGP_C3HHeJ_T0056727.1 MGP_C3HHeJ_G0026089.1 mouse_genomes_project 2 122203380 122209633 + Snap23 protein_coding processed_transcript MGP_C3HHeJ_T0013536.1 MGP_C3HHeJ_G0011640.1 mouse_genomes_project 2 100654999 100655183 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013636.1 MGP_C3HHeJ_G0011740.1 mouse_genomes_project 2 144471290 144479877 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057054.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127962864 128150426 - MGP_C3HHeJ_P0057054 Fam227b protein_coding protein_coding MGP_C3HHeJ_T0057055.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127963009 128150406 - MGP_C3HHeJ_P0057055 Fam227b protein_coding protein_coding MGP_C3HHeJ_T0057056.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127963009 128138750 - MGP_C3HHeJ_P0057056 Fam227b protein_coding protein_coding MGP_C3HHeJ_T0057057.1 MGP_C3HHeJ_G0026155.1 mouse_genomes_project 2 127981099 128150426 - Fam227b protein_coding retained_intron MGP_C3HHeJ_T0017651.1 MGP_C3HHeJ_G0015233.1 mouse_genomes_project 2 132722601 132743338 - 4930473A02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0055481.1 MGP_C3HHeJ_G0025729.1 mouse_genomes_project 2 87319880 87321316 + MGP_C3HHeJ_P0055481 Olfr1116 protein_coding protein_coding MGP_C3HHeJ_T0004107.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177391939 177395783 + Ctcflos antisense antisense MGP_C3HHeJ_T0004108.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177391956 177418836 + Ctcflos antisense antisense MGP_C3HHeJ_T0004109.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177401883 177415876 + Ctcflos antisense antisense MGP_C3HHeJ_T0004110.1 MGP_C3HHeJ_G0003627.1 mouse_genomes_project 2 177411595 177419770 + Ctcflos antisense antisense MGP_C3HHeJ_T0056238.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106501269 106701349 - MGP_C3HHeJ_P0056238 Elp4 protein_coding protein_coding MGP_C3HHeJ_T0056239.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106530745 106658716 - MGP_C3HHeJ_P0056239 Elp4 protein_coding protein_coding MGP_C3HHeJ_T0056240.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106599212 106621365 - Elp4 protein_coding retained_intron MGP_C3HHeJ_T0056241.1 MGP_C3HHeJ_G0025951.1 mouse_genomes_project 2 106658803 106701269 - Elp4 protein_coding processed_transcript MGP_C3HHeJ_T0007099.1 MGP_C3HHeJ_G0005816.1 mouse_genomes_project 2 33452561 33454275 + Gm13605 lincRNA lincRNA MGP_C3HHeJ_T0013287.1 MGP_C3HHeJ_G0011391.1 mouse_genomes_project 2 12076906 12077285 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003958.1 MGP_C3HHeJ_G0003518.1 mouse_genomes_project 2 84903297 84917263 + Gm13713 antisense antisense MGP_C3HHeJ_T0003959.1 MGP_C3HHeJ_G0003518.1 mouse_genomes_project 2 84903297 84939259 + Gm13713 antisense antisense MGP_C3HHeJ_T0007200.1 MGP_C3HHeJ_G0005898.1 mouse_genomes_project 2 104640172 104648504 + Gm13881 lincRNA lincRNA MGP_C3HHeJ_T0058799.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210536 168215198 + MGP_C3HHeJ_P0058799 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058800.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210885 168215706 + MGP_C3HHeJ_P0058800 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058801.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210885 168215198 + MGP_C3HHeJ_P0058801 Dbndd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058802.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168210911 168214647 + MGP_C3HHeJ_P0058802 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058803.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168211307 168217779 + MGP_C3HHeJ_P0058803 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0058804.1 MGP_C3HHeJ_G0026572.1 mouse_genomes_project 2 168212251 168215198 + MGP_C3HHeJ_P0058804 Dbndd2 protein_coding protein_coding MGP_C3HHeJ_T0057140.1 MGP_C3HHeJ_G0026173.1 mouse_genomes_project 2 129327743 129340910 + MGP_C3HHeJ_P0057140 Tmem127 protein_coding protein_coding MGP_C3HHeJ_T0057141.1 MGP_C3HHeJ_G0026173.1 mouse_genomes_project 2 129327804 129336974 + MGP_C3HHeJ_P0057141 Tmem127 protein_coding protein_coding MGP_C3HHeJ_T0057142.1 MGP_C3HHeJ_G0026173.1 mouse_genomes_project 2 129327808 129337346 + MGP_C3HHeJ_P0057142 Tmem127 protein_coding protein_coding MGP_C3HHeJ_T0010303.1 MGP_C3HHeJ_G0008436.1 mouse_genomes_project 2 25214560 25214642 - Mir7578 miRNA miRNA MGP_C3HHeJ_T0058771.1 MGP_C3HHeJ_G0026560.1 mouse_genomes_project 2 167954466 167961053 - MGP_C3HHeJ_P0058771 protein_coding protein_coding MGP_C3HHeJ_T0013729.1 MGP_C3HHeJ_G0011833.1 mouse_genomes_project 2 178925528 178926101 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057247.1 MGP_C3HHeJ_G0026203.1 mouse_genomes_project 2 131257344 131261770 + MGP_C3HHeJ_P0057247 Chchd5 protein_coding protein_coding MGP_C3HHeJ_T0057248.1 MGP_C3HHeJ_G0026203.1 mouse_genomes_project 2 131257448 131261649 + Chchd5 protein_coding processed_transcript MGP_C3HHeJ_T0057249.1 MGP_C3HHeJ_G0026203.1 mouse_genomes_project 2 131257494 131261116 + Chchd5 protein_coding retained_intron MGP_C3HHeJ_T0054198.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35636320 35646364 - MGP_C3HHeJ_P0054198 Pdcl protein_coding protein_coding MGP_C3HHeJ_T0054199.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35636834 35646285 - MGP_C3HHeJ_P0054199 Pdcl protein_coding protein_coding MGP_C3HHeJ_T0054200.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35638365 35646221 - MGP_C3HHeJ_P0054200 Pdcl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054201.1 MGP_C3HHeJ_G0025425.1 mouse_genomes_project 2 35638404 35646228 - MGP_C3HHeJ_P0054201 Pdcl protein_coding protein_coding MGP_C3HHeJ_T0059350.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184724844 184728115 - Lama5 protein_coding processed_transcript MGP_C3HHeJ_T0059351.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184724844 184774020 - MGP_C3HHeJ_P0059351 Lama5 protein_coding protein_coding MGP_C3HHeJ_T0059352.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184724925 184726059 - Lama5 protein_coding processed_transcript MGP_C3HHeJ_T0059353.1 MGP_C3HHeJ_G0026705.1 mouse_genomes_project 2 184725639 184726875 - Lama5 protein_coding processed_transcript MGP_C3HHeJ_T0056179.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105432879 105457476 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0056182.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105451188 105486617 - MGP_C3HHeJ_P0056182 Tcp11l1 protein_coding protein_coding MGP_C3HHeJ_T0056183.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105453147 105486623 - MGP_C3HHeJ_P0056183 Tcp11l1 protein_coding protein_coding MGP_C3HHeJ_T0056184.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105457999 105486630 - Tcp11l1 protein_coding retained_intron MGP_C3HHeJ_T0056185.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105470811 105479533 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0056186.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105472357 105486554 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0056187.1 MGP_C3HHeJ_G0025940.1 mouse_genomes_project 2 105478015 105486627 - Tcp11l1 protein_coding processed_transcript MGP_C3HHeJ_T0010253.1 MGP_C3HHeJ_G0008386.1 mouse_genomes_project 2 7690496 7690617 + Mir669f miRNA miRNA MGP_C3HHeJ_T0058268.1 MGP_C3HHeJ_G0026461.1 mouse_genomes_project 2 159076395 159120937 + MGP_C3HHeJ_P0058268 Mmp24 protein_coding protein_coding MGP_C3HHeJ_T0058269.1 MGP_C3HHeJ_G0026461.1 mouse_genomes_project 2 159108631 159111899 + Mmp24 protein_coding retained_intron MGP_C3HHeJ_T0010279.1 MGP_C3HHeJ_G0008412.1 mouse_genomes_project 2 7717209 7717305 + Mir669o miRNA miRNA MGP_C3HHeJ_T0100458.1 MGP_C3HHeJ_G0038652.1 mouse_genomes_project 2 60278102 60278234 + Gm26422 snoRNA snoRNA MGP_C3HHeJ_T0057705.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251596 147265839 + MGP_C3HHeJ_P0057705 Polr3f protein_coding protein_coding MGP_C3HHeJ_T0057706.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251620 147254574 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057707.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251626 147259017 + MGP_C3HHeJ_P0057707 Polr3f protein_coding protein_coding MGP_C3HHeJ_T0057708.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147251658 147258534 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057709.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147256203 147262638 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057710.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147259784 147260472 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057711.1 MGP_C3HHeJ_G0026306.1 mouse_genomes_project 2 147260019 147262738 + Polr3f protein_coding processed_transcript MGP_C3HHeJ_T0057621.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142381790 142624476 - MGP_C3HHeJ_P0057621 Tasp1 protein_coding protein_coding MGP_C3HHeJ_T0057622.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142381790 142624451 - MGP_C3HHeJ_P0057622 Tasp1 protein_coding protein_coding MGP_C3HHeJ_T0057623.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142381790 142624496 - MGP_C3HHeJ_P0057623 Tasp1 protein_coding protein_coding MGP_C3HHeJ_T0057624.1 MGP_C3HHeJ_G0026285.1 mouse_genomes_project 2 142529729 142598823 - Tasp1 protein_coding retained_intron MGP_C3HHeJ_T0059316.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184582943 184583955 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059317.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184582944 184588983 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059318.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184582944 184589021 - MGP_C3HHeJ_P0059318 Psma7 protein_coding protein_coding MGP_C3HHeJ_T0059319.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184583389 184584059 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059320.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184584204 184585392 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059321.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184584639 184586716 - Psma7 protein_coding retained_intron MGP_C3HHeJ_T0059322.1 MGP_C3HHeJ_G0026699.1 mouse_genomes_project 2 184585866 184588973 - Psma7 protein_coding processed_transcript MGP_C3HHeJ_T0055446.1 MGP_C3HHeJ_G0025696.1 mouse_genomes_project 2 86221675 86222611 - MGP_C3HHeJ_P0055446 Olfr1055 protein_coding protein_coding MGP_C3HHeJ_T0058419.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632560 159690089 + MGP_C3HHeJ_P0058419 Cnbd2 protein_coding protein_coding MGP_C3HHeJ_T0058420.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632839 159660225 + Cnbd2 protein_coding processed_transcript MGP_C3HHeJ_T0058421.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632878 159640903 + Cnbd2 protein_coding retained_intron MGP_C3HHeJ_T0058422.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159632894 159690092 + MGP_C3HHeJ_P0058422 Cnbd2 protein_coding protein_coding MGP_C3HHeJ_T0058423.1 MGP_C3HHeJ_G0026481.1 mouse_genomes_project 2 159655441 159660827 + Cnbd2 protein_coding processed_transcript MGP_C3HHeJ_T0053434.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023511 28025587 - Zdhhc12 protein_coding processed_transcript MGP_C3HHeJ_T0053435.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023511 28026216 - MGP_C3HHeJ_P0053435 Zdhhc12 protein_coding protein_coding MGP_C3HHeJ_T0053436.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023518 28026203 - MGP_C3HHeJ_P0053436 Zdhhc12 protein_coding protein_coding MGP_C3HHeJ_T0053437.1 MGP_C3HHeJ_G0025288.1 mouse_genomes_project 2 28023898 28026184 - Zdhhc12 protein_coding retained_intron MGP_C3HHeJ_T0058748.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167713044 167741172 + MGP_C3HHeJ_P0058748 Pabpc1l protein_coding protein_coding MGP_C3HHeJ_T0058749.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167719761 167732615 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0058750.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167727286 167732842 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0058751.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167738105 167741172 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0058752.1 MGP_C3HHeJ_G0026551.1 mouse_genomes_project 2 167738647 167740801 + Pabpc1l protein_coding processed_transcript MGP_C3HHeJ_T0101891.1 MGP_C3HHeJ_G0039856.1 mouse_genomes_project 2 85430834 85431779 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057192.1 MGP_C3HHeJ_G0026187.1 mouse_genomes_project 2 129877427 129878529 - MGP_C3HHeJ_P0057192 1500011K16Rik protein_coding protein_coding MGP_C3HHeJ_T0098104.1 MGP_C3HHeJ_G0036316.1 mouse_genomes_project 2 84445183 84445296 - n-R5s200 rRNA rRNA MGP_C3HHeJ_T0056611.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121354713 121375137 + MGP_C3HHeJ_P0056611 Tyro3 protein_coding protein_coding MGP_C3HHeJ_T0056612.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121356262 121362667 + Tyro3 protein_coding processed_transcript MGP_C3HHeJ_T0056613.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121356350 121360352 + Tyro3 protein_coding processed_transcript MGP_C3HHeJ_T0056614.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121356535 121375137 + MGP_C3HHeJ_P0056614 Tyro3 protein_coding protein_coding MGP_C3HHeJ_T0056615.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121358124 121360310 + Tyro3 protein_coding processed_transcript MGP_C3HHeJ_T0056616.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121360103 121365010 + Tyro3 protein_coding retained_intron MGP_C3HHeJ_T0056617.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121366226 121375124 + Tyro3 protein_coding retained_intron MGP_C3HHeJ_T0056618.1 MGP_C3HHeJ_G0026073.1 mouse_genomes_project 2 121367862 121369408 + Tyro3 protein_coding retained_intron MGP_C3HHeJ_T0056211.1 MGP_C3HHeJ_G0025948.1 mouse_genomes_project 2 106022505 106175624 + MGP_C3HHeJ_P0056211 Them7 protein_coding protein_coding MGP_C3HHeJ_T0056212.1 MGP_C3HHeJ_G0025948.1 mouse_genomes_project 2 106022527 106174863 + Them7 protein_coding processed_transcript MGP_C3HHeJ_T0057676.1 MGP_C3HHeJ_G0026299.1 mouse_genomes_project 2 146728116 146769541 + MGP_C3HHeJ_P0057676 Banf2 protein_coding protein_coding MGP_C3HHeJ_T0057677.1 MGP_C3HHeJ_G0026299.1 mouse_genomes_project 2 146728159 146769541 + MGP_C3HHeJ_P0057677 Banf2 protein_coding protein_coding MGP_C3HHeJ_T0055575.1 MGP_C3HHeJ_G0025809.1 mouse_genomes_project 2 89290132 89291068 - MGP_C3HHeJ_P0055575 Olfr1222 protein_coding protein_coding MGP_C3HHeJ_T0055576.1 MGP_C3HHeJ_G0025809.1 mouse_genomes_project 2 89290417 89291070 - MGP_C3HHeJ_P0055576 Olfr1222 protein_coding protein_coding MGP_C3HHeJ_T0055816.1 MGP_C3HHeJ_G0025873.1 mouse_genomes_project 2 91996014 92007084 - MGP_C3HHeJ_P0055816 F2 protein_coding protein_coding MGP_C3HHeJ_T0055817.1 MGP_C3HHeJ_G0025873.1 mouse_genomes_project 2 91996023 92007077 - MGP_C3HHeJ_P0055817 F2 protein_coding protein_coding MGP_C3HHeJ_T0055818.1 MGP_C3HHeJ_G0025873.1 mouse_genomes_project 2 92001841 92007065 - F2 protein_coding processed_transcript MGP_C3HHeJ_T0054145.1 MGP_C3HHeJ_G0025392.1 mouse_genomes_project 2 34305281 34318362 - MGP_C3HHeJ_P0054145 Ndufa8 protein_coding protein_coding MGP_C3HHeJ_T0003964.1 MGP_C3HHeJ_G0003522.1 mouse_genomes_project 2 93867043 93882290 + Gm13807 antisense antisense MGP_C3HHeJ_T0054001.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598671 32691064 + MGP_C3HHeJ_P0054001 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054002.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598769 32624683 + MGP_C3HHeJ_P0054002 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054003.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598772 32672194 + Mapkap1 protein_coding processed_transcript MGP_C3HHeJ_T0054004.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598775 32821431 + MGP_C3HHeJ_P0054004 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054005.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32598778 32821447 + MGP_C3HHeJ_P0054005 Mapkap1 protein_coding protein_coding MGP_C3HHeJ_T0054006.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32631721 32730421 + Mapkap1 protein_coding processed_transcript MGP_C3HHeJ_T0054007.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32637574 32691221 + MGP_C3HHeJ_P0054007 Mapkap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054008.1 MGP_C3HHeJ_G0025372.1 mouse_genomes_project 2 32817464 32821802 + Mapkap1 protein_coding processed_transcript MGP_C3HHeJ_T0057825.1 MGP_C3HHeJ_G0026340.1 mouse_genomes_project 2 152288582 152292065 + MGP_C3HHeJ_P0057825 Cst10 protein_coding protein_coding MGP_C3HHeJ_T0057826.1 MGP_C3HHeJ_G0026340.1 mouse_genomes_project 2 152288774 152292065 + MGP_C3HHeJ_P0057826 Cst10 protein_coding protein_coding MGP_C3HHeJ_T0057827.1 MGP_C3HHeJ_G0026340.1 mouse_genomes_project 2 152288858 152292065 + MGP_C3HHeJ_P0057827 Cst10 protein_coding protein_coding MGP_C3HHeJ_T0056332.1 MGP_C3HHeJ_G0025992.1 mouse_genomes_project 2 113074300 113075239 - MGP_C3HHeJ_P0056332 Olfr1305 protein_coding protein_coding MGP_C3HHeJ_T0010294.1 MGP_C3HHeJ_G0008427.1 mouse_genomes_project 2 20165592 20165687 + Gm23636 miRNA miRNA MGP_C3HHeJ_T0013343.1 MGP_C3HHeJ_G0011447.1 mouse_genomes_project 2 32604888 32605248 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013321.1 MGP_C3HHeJ_G0011425.1 mouse_genomes_project 2 21778313 21779797 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001041.1 MGP_C3HHeJ_G0000978.1 mouse_genomes_project 2 36819385 36824242 + TEC TEC MGP_C3HHeJ_T0059216.1 MGP_C3HHeJ_G0026671.1 mouse_genomes_project 2 177373502 177401671 - MGP_C3HHeJ_P0059216 Ctcfl protein_coding protein_coding MGP_C3HHeJ_T0013522.1 MGP_C3HHeJ_G0011626.1 mouse_genomes_project 2 93321240 93321663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013290.1 MGP_C3HHeJ_G0011394.1 mouse_genomes_project 2 12743526 12744322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007338.1 MGP_C3HHeJ_G0006013.1 mouse_genomes_project 2 175351208 175427796 + Gm14266 lincRNA lincRNA MGP_C3HHeJ_T0007341.1 MGP_C3HHeJ_G0006013.1 mouse_genomes_project 2 175411175 175429954 + Gm14266 lincRNA lincRNA MGP_C3HHeJ_T0001009.1 MGP_C3HHeJ_G0000946.1 mouse_genomes_project 2 10444041 10446301 - TEC TEC MGP_C3HHeJ_T0056367.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888628 113910139 - Ryr3 protein_coding processed_transcript MGP_C3HHeJ_T0056368.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888637 114472366 - MGP_C3HHeJ_P0056368 Ryr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056369.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888653 114289866 - MGP_C3HHeJ_P0056369 Ryr3 protein_coding protein_coding MGP_C3HHeJ_T0056370.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113888653 114472427 - MGP_C3HHeJ_P0056370 Ryr3 protein_coding protein_coding MGP_C3HHeJ_T0056371.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113889319 114472444 - Ryr3 protein_coding processed_transcript MGP_C3HHeJ_T0056372.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 113894013 113897889 - Ryr3 protein_coding processed_transcript MGP_C3HHeJ_T0056373.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 114112509 114164522 - Ryr3 protein_coding retained_intron MGP_C3HHeJ_T0056374.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 114223257 114472438 - Ryr3 protein_coding retained_intron MGP_C3HHeJ_T0056375.1 MGP_C3HHeJ_G0026013.1 mouse_genomes_project 2 114255340 114472460 - Ryr3 protein_coding retained_intron MGP_C3HHeJ_T0057265.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732567 131752036 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057266.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131752039 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057267.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131773399 + MGP_C3HHeJ_P0057267 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057268.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131757444 + MGP_C3HHeJ_P0057268 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057269.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732571 131773399 + MGP_C3HHeJ_P0057269 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057270.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732597 131752228 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057271.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732646 131773407 + MGP_C3HHeJ_P0057271 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057272.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732927 131773399 + MGP_C3HHeJ_P0057272 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057273.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131732937 131773407 + MGP_C3HHeJ_P0057273 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057274.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733287 131773407 + MGP_C3HHeJ_P0057274 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057275.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733294 131771768 + Sirpa protein_coding processed_transcript MGP_C3HHeJ_T0057276.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733300 131771476 + MGP_C3HHeJ_P0057276 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057277.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131733345 131771363 + MGP_C3HHeJ_P0057277 Sirpa protein_coding protein_coding MGP_C3HHeJ_T0057278.1 MGP_C3HHeJ_G0026209.1 mouse_genomes_project 2 131761874 131769223 + Sirpa protein_coding retained_intron MGP_C3HHeJ_T0017547.1 MGP_C3HHeJ_G0015178.1 mouse_genomes_project 2 34481865 34483774 + Gm13429 processed_transcript processed_transcript MGP_C3HHeJ_T0017548.1 MGP_C3HHeJ_G0015178.1 mouse_genomes_project 2 34482336 34492409 + Gm13429 processed_transcript processed_transcript MGP_C3HHeJ_T0017549.1 MGP_C3HHeJ_G0015178.1 mouse_genomes_project 2 34490277 34492408 + Gm13429 processed_transcript processed_transcript MGP_C3HHeJ_T0007293.1 MGP_C3HHeJ_G0005974.1 mouse_genomes_project 2 164500979 164502087 - Gm14228 lincRNA lincRNA MGP_C3HHeJ_T0001026.1 MGP_C3HHeJ_G0000963.1 mouse_genomes_project 2 21839294 21841078 + TEC TEC MGP_C3HHeJ_T0013585.1 MGP_C3HHeJ_G0011689.1 mouse_genomes_project 2 119965637 119966502 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056569.1 MGP_C3HHeJ_G0026061.1 mouse_genomes_project 2 120849186 120859368 + MGP_C3HHeJ_P0056569 Dll4 protein_coding protein_coding MGP_C3HHeJ_T0056570.1 MGP_C3HHeJ_G0026061.1 mouse_genomes_project 2 120851940 120855697 + Dll4 protein_coding processed_transcript MGP_C3HHeJ_T0055134.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76266038 76276068 - MGP_C3HHeJ_P0055134 Fkbp7 protein_coding protein_coding MGP_C3HHeJ_T0055135.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76266057 76268238 - Fkbp7 protein_coding processed_transcript MGP_C3HHeJ_T0055136.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76268701 76276114 - MGP_C3HHeJ_P0055136 Fkbp7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055137.1 MGP_C3HHeJ_G0025600.1 mouse_genomes_project 2 76274359 76276083 - Fkbp7 protein_coding retained_intron MGP_C3HHeJ_T0003898.1 MGP_C3HHeJ_G0003477.1 mouse_genomes_project 2 42562358 42568405 - Arhgap15os antisense antisense MGP_C3HHeJ_T0017630.1 MGP_C3HHeJ_G0015225.1 mouse_genomes_project 2 124456609 124458736 + processed_transcript processed_transcript MGP_C3HHeJ_T0017631.1 MGP_C3HHeJ_G0015225.1 mouse_genomes_project 2 124456630 124469631 + processed_transcript processed_transcript MGP_C3HHeJ_T0007236.1 MGP_C3HHeJ_G0005927.1 mouse_genomes_project 2 126147569 126151975 - 4930583P06Rik lincRNA lincRNA MGP_C3HHeJ_T0055825.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92020423 92043591 + MGP_C3HHeJ_P0055825 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055826.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92020681 92043591 + MGP_C3HHeJ_P0055826 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055827.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92020785 92043591 + MGP_C3HHeJ_P0055827 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055828.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92022061 92025095 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055829.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92022061 92025097 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055830.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92022310 92038906 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055831.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92023771 92043567 + MGP_C3HHeJ_P0055831 Arhgap1 protein_coding protein_coding MGP_C3HHeJ_T0055832.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92039093 92041939 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055833.1 MGP_C3HHeJ_G0025875.1 mouse_genomes_project 2 92040508 92041625 + Arhgap1 protein_coding processed_transcript MGP_C3HHeJ_T0055592.1 MGP_C3HHeJ_G0025822.1 mouse_genomes_project 2 89581909 89582827 - MGP_C3HHeJ_P0055592 Olfr1239 protein_coding protein_coding MGP_C3HHeJ_T0059554.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183414 186184653 - MGP_C3HHeJ_P0059554 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059555.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183417 186184063 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059556.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183428 186196242 - MGP_C3HHeJ_P0059556 Uckl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059557.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183430 186184147 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059558.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183496 186186805 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059559.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183576 186196238 - MGP_C3HHeJ_P0059559 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059560.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183879 186187392 - MGP_C3HHeJ_P0059560 Uckl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059561.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186183918 186187392 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059562.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184029 186185640 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059563.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184115 186187401 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059564.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184271 186188741 - Uckl1 protein_coding processed_transcript MGP_C3HHeJ_T0059565.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186184626 186186423 - Uckl1 protein_coding processed_transcript MGP_C3HHeJ_T0059566.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186186589 186188765 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059567.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186187517 186199161 - MGP_C3HHeJ_P0059567 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059568.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186187562 186189099 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0059569.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186187573 186193217 - MGP_C3HHeJ_P0059569 Uckl1 protein_coding protein_coding MGP_C3HHeJ_T0059570.1 MGP_C3HHeJ_G0026744.1 mouse_genomes_project 2 186188549 186196248 - Uckl1 protein_coding retained_intron MGP_C3HHeJ_T0055602.1 MGP_C3HHeJ_G0025829.1 mouse_genomes_project 2 89766639 89767584 - MGP_C3HHeJ_P0055602 Olfr1247 protein_coding protein_coding MGP_C3HHeJ_T0055603.1 MGP_C3HHeJ_G0025829.1 mouse_genomes_project 2 89766639 89771689 - MGP_C3HHeJ_P0055603 Olfr1247 protein_coding protein_coding MGP_C3HHeJ_T0055604.1 MGP_C3HHeJ_G0025829.1 mouse_genomes_project 2 89767340 89769183 - MGP_C3HHeJ_P0055604 Olfr1247 protein_coding protein_coding MGP_C3HHeJ_T0003957.1 MGP_C3HHeJ_G0003517.1 mouse_genomes_project 2 83489455 83489915 - Gm13686 antisense antisense MGP_C3HHeJ_T0057966.1 MGP_C3HHeJ_G0026381.1 mouse_genomes_project 2 155558332 155563057 - MGP_C3HHeJ_P0057966 Defb22 protein_coding protein_coding MGP_C3HHeJ_T0007310.1 MGP_C3HHeJ_G0005990.1 mouse_genomes_project 2 170314311 170326765 + 5031425F14Rik lincRNA lincRNA MGP_C3HHeJ_T0013689.1 MGP_C3HHeJ_G0011793.1 mouse_genomes_project 2 159702180 159702662 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055601.1 MGP_C3HHeJ_G0025828.1 mouse_genomes_project 2 89749955 89750900 - MGP_C3HHeJ_P0055601 Olfr1246 protein_coding protein_coding MGP_C3HHeJ_T0101918.1 MGP_C3HHeJ_G0039883.1 mouse_genomes_project 2 90351107 90352032 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054444.1 MGP_C3HHeJ_G0025463.1 mouse_genomes_project 2 50790231 50809737 + MGP_C3HHeJ_P0054444 Tnfaip6 protein_coding protein_coding MGP_C3HHeJ_T0099191.1 MGP_C3HHeJ_G0037385.1 mouse_genomes_project 2 47015685 47015805 - Gm25338 snRNA snRNA MGP_C3HHeJ_T0013505.1 MGP_C3HHeJ_G0011609.1 mouse_genomes_project 2 87585964 87586376 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001049.1 MGP_C3HHeJ_G0000986.1 mouse_genomes_project 2 68176970 68180575 + TEC TEC MGP_C3HHeJ_T0003852.1 MGP_C3HHeJ_G0003441.1 mouse_genomes_project 2 23768463 23769755 + Gm13554 antisense antisense MGP_C3HHeJ_T0007230.1 MGP_C3HHeJ_G0005923.1 mouse_genomes_project 2 119749447 119755401 - A930104D05Rik lincRNA lincRNA MGP_C3HHeJ_T0007231.1 MGP_C3HHeJ_G0005923.1 mouse_genomes_project 2 119752237 119755233 - A930104D05Rik lincRNA lincRNA MGP_C3HHeJ_T0052984.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23932947 23941025 - MGP_C3HHeJ_P0052984 Lhx3 protein_coding protein_coding MGP_C3HHeJ_T0052985.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23932951 23935602 - Lhx3 protein_coding retained_intron MGP_C3HHeJ_T0052986.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23932951 23939311 - MGP_C3HHeJ_P0052986 Lhx3 protein_coding protein_coding MGP_C3HHeJ_T0052987.1 MGP_C3HHeJ_G0025212.1 mouse_genomes_project 2 23935211 23936177 - Lhx3 protein_coding retained_intron MGP_C3HHeJ_T0100491.1 MGP_C3HHeJ_G0038685.1 mouse_genomes_project 2 146964563 146964801 - Snord17 snoRNA snoRNA MGP_C3HHeJ_T0053274.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26520141 26527678 - MGP_C3HHeJ_P0053274 Spaca9 protein_coding protein_coding MGP_C3HHeJ_T0053275.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26520145 26527710 - MGP_C3HHeJ_P0053275 Spaca9 protein_coding protein_coding MGP_C3HHeJ_T0053276.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26521073 26527754 - Spaca9 protein_coding processed_transcript MGP_C3HHeJ_T0053277.1 MGP_C3HHeJ_G0025264.1 mouse_genomes_project 2 26521768 26527701 - Spaca9 protein_coding processed_transcript MGP_C3HHeJ_T0013686.1 MGP_C3HHeJ_G0011790.1 mouse_genomes_project 2 159643266 159643526 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001048.1 MGP_C3HHeJ_G0000985.1 mouse_genomes_project 2 67148856 67153742 + TEC TEC MGP_C3HHeJ_T0013685.1 MGP_C3HHeJ_G0011789.1 mouse_genomes_project 2 159373258 159373801 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058822.1 MGP_C3HHeJ_G0026580.1 mouse_genomes_project 2 168378321 168382428 - MGP_C3HHeJ_P0058822 Wfdc16 protein_coding protein_coding MGP_C3HHeJ_T0001054.1 MGP_C3HHeJ_G0000991.1 mouse_genomes_project 2 68300968 68304741 + TEC TEC MGP_C3HHeJ_T0056343.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113463185 113474749 + MGP_C3HHeJ_P0056343 Lpcat4 protein_coding protein_coding MGP_C3HHeJ_T0056344.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113465190 113471618 + Lpcat4 protein_coding processed_transcript MGP_C3HHeJ_T0056345.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113465687 113466477 + Lpcat4 protein_coding processed_transcript MGP_C3HHeJ_T0056346.1 MGP_C3HHeJ_G0026003.1 mouse_genomes_project 2 113472142 113474531 + Lpcat4 protein_coding processed_transcript MGP_C3HHeJ_T0055584.1 MGP_C3HHeJ_G0025816.1 mouse_genomes_project 2 89446612 89447530 - MGP_C3HHeJ_P0055584 Olfr1230 protein_coding protein_coding MGP_C3HHeJ_T0058714.1 MGP_C3HHeJ_G0026540.1 mouse_genomes_project 2 167155618 167161869 - MGP_C3HHeJ_P0058714 Fitm2 protein_coding protein_coding MGP_C3HHeJ_T0058920.1 MGP_C3HHeJ_G0026606.1 mouse_genomes_project 2 168892260 169021664 - MGP_C3HHeJ_P0058920 Cdh22 protein_coding protein_coding MGP_C3HHeJ_T0058921.1 MGP_C3HHeJ_G0026606.1 mouse_genomes_project 2 168893080 168965619 - MGP_C3HHeJ_P0058921 Cdh22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057332.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598514 132614778 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057333.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598540 132620594 + MGP_C3HHeJ_P0057333 Vps16 protein_coding protein_coding MGP_C3HHeJ_T0057334.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598540 132616242 + MGP_C3HHeJ_P0057334 Vps16 protein_coding protein_coding MGP_C3HHeJ_T0057335.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132598579 132616621 + Vps16 protein_coding processed_transcript MGP_C3HHeJ_T0057336.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132613960 132615392 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057337.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132615954 132618030 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057338.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132616646 132617632 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057339.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132617932 132619724 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0057340.1 MGP_C3HHeJ_G0026224.1 mouse_genomes_project 2 132619491 132620059 + Vps16 protein_coding retained_intron MGP_C3HHeJ_T0054895.1 MGP_C3HHeJ_G0025546.1 mouse_genomes_project 2 70038411 70039272 - MGP_C3HHeJ_P0054895 Gm26558 protein_coding protein_coding MGP_C3HHeJ_T0098387.1 MGP_C3HHeJ_G0036593.1 mouse_genomes_project 2 321370 324181 - Gm37525 sense_intronic sense_intronic MGP_C3HHeJ_T0055410.1 MGP_C3HHeJ_G0025661.1 mouse_genomes_project 2 85377371 85378316 + MGP_C3HHeJ_P0055410 Olfr998 protein_coding protein_coding MGP_C3HHeJ_T0058374.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159440459 159461523 - MGP_C3HHeJ_P0058374 protein_coding protein_coding MGP_C3HHeJ_T0058375.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159440470 159456007 - MGP_C3HHeJ_P0058375 protein_coding protein_coding MGP_C3HHeJ_T0058376.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159454684 159461490 - protein_coding retained_intron MGP_C3HHeJ_T0058377.1 MGP_C3HHeJ_G0026476.1 mouse_genomes_project 2 159459240 159461517 - MGP_C3HHeJ_P0058377 protein_coding protein_coding MGP_C3HHeJ_T0007284.1 MGP_C3HHeJ_G0005967.1 mouse_genomes_project 2 159896939 159902591 + Gm14168 lincRNA lincRNA MGP_C3HHeJ_T0004004.1 MGP_C3HHeJ_G0003549.1 mouse_genomes_project 2 129776513 129785380 + Gm14244 antisense antisense MGP_C3HHeJ_T0058816.1 MGP_C3HHeJ_G0026576.1 mouse_genomes_project 2 168326030 168331284 - MGP_C3HHeJ_P0058816 Eppin protein_coding protein_coding MGP_C3HHeJ_T0056566.1 MGP_C3HHeJ_G0026060.1 mouse_genomes_project 2 120812522 120819379 + Vps18 protein_coding retained_intron MGP_C3HHeJ_T0056567.1 MGP_C3HHeJ_G0026060.1 mouse_genomes_project 2 120812524 120822309 + MGP_C3HHeJ_P0056567 Vps18 protein_coding protein_coding MGP_C3HHeJ_T0056568.1 MGP_C3HHeJ_G0026060.1 mouse_genomes_project 2 120812569 120822182 + Vps18 protein_coding processed_transcript MGP_C3HHeJ_T0098281.1 MGP_C3HHeJ_G0036493.1 mouse_genomes_project 2 104764100 104764239 + Gm24644 scaRNA scaRNA MGP_C3HHeJ_T0013460.1 MGP_C3HHeJ_G0011564.1 mouse_genomes_project 2 73492974 73493975 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052215.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723576 8809424 - MGP_C3HHeJ_P0052215 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052216.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723934 8755861 - MGP_C3HHeJ_P0052216 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052217.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723967 8755861 - MGP_C3HHeJ_P0052217 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052218.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723969 8755861 - MGP_C3HHeJ_P0052218 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052219.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723969 8809269 - MGP_C3HHeJ_P0052219 Pfkfb3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052220.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8723971 8752143 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0052221.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755861 - MGP_C3HHeJ_P0052221 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052222.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755861 - MGP_C3HHeJ_P0052222 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052223.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755861 - MGP_C3HHeJ_P0052223 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052224.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8726550 8755460 - MGP_C3HHeJ_P0052224 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052225.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8727907 8755850 - MGP_C3HHeJ_P0052225 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052226.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8727907 8755850 - MGP_C3HHeJ_P0052226 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052227.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8730098 8755861 - MGP_C3HHeJ_P0052227 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052228.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8730110 8755861 - MGP_C3HHeJ_P0052228 Pfkfb3 protein_coding protein_coding MGP_C3HHeJ_T0052229.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8733645 8755835 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052230.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8734755 8735857 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052231.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8744092 8755777 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0052232.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8746055 8755557 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052233.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8746355 8752109 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0052234.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8746382 8755056 - Pfkfb3 protein_coding retained_intron MGP_C3HHeJ_T0052235.1 MGP_C3HHeJ_G0025076.1 mouse_genomes_project 2 8747651 8754623 - Pfkfb3 protein_coding processed_transcript MGP_C3HHeJ_T0013311.1 MGP_C3HHeJ_G0011415.1 mouse_genomes_project 2 17576125 17576924 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059085.1 MGP_C3HHeJ_G0026633.1 mouse_genomes_project 2 171465459 171474029 + MGP_C3HHeJ_P0059085 Snai1 protein_coding protein_coding MGP_C3HHeJ_T0057971.1 MGP_C3HHeJ_G0026386.1 mouse_genomes_project 2 155646912 155649113 + MGP_C3HHeJ_P0057971 Defb21 protein_coding protein_coding MGP_C3HHeJ_T0001024.1 MGP_C3HHeJ_G0000961.1 mouse_genomes_project 2 12951313 12953054 + TEC TEC MGP_C3HHeJ_T0056448.1 MGP_C3HHeJ_G0026031.1 mouse_genomes_project 2 119585908 119601123 + MGP_C3HHeJ_P0056448 Thbs1 protein_coding protein_coding MGP_C3HHeJ_T0056449.1 MGP_C3HHeJ_G0026031.1 mouse_genomes_project 2 119596932 119597757 + Thbs1 protein_coding processed_transcript MGP_C3HHeJ_T0059410.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185536360 185556346 - MGP_C3HHeJ_P0059410 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059411.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185536360 185544733 - MGP_C3HHeJ_P0059411 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059412.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185536360 185556346 - MGP_C3HHeJ_P0059412 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059413.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185537573 185556267 - MGP_C3HHeJ_P0059413 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059414.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185538769 185556341 - MGP_C3HHeJ_P0059414 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0059415.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185544819 185555966 - Nkain4 protein_coding processed_transcript MGP_C3HHeJ_T0059416.1 MGP_C3HHeJ_G0026722.1 mouse_genomes_project 2 185545395 185551246 - MGP_C3HHeJ_P0059416 Nkain4 protein_coding protein_coding MGP_C3HHeJ_T0058300.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270672 159301608 + Cep250 protein_coding retained_intron MGP_C3HHeJ_T0058301.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270777 159313465 + MGP_C3HHeJ_P0058301 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058302.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270777 159313465 + MGP_C3HHeJ_P0058302 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058303.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270777 159313465 + MGP_C3HHeJ_P0058303 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058304.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270791 159289470 + MGP_C3HHeJ_P0058304 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058305.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159270813 159282969 + MGP_C3HHeJ_P0058305 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058307.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159291404 159314857 + Cep250 protein_coding retained_intron MGP_C3HHeJ_T0058308.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159294562 159296450 + Cep250 protein_coding retained_intron MGP_C3HHeJ_T0058309.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159300877 159304574 + MGP_C3HHeJ_P0058309 Cep250 protein_coding protein_coding MGP_C3HHeJ_T0058310.1 MGP_C3HHeJ_G0026468.1 mouse_genomes_project 2 159300909 159305567 + MGP_C3HHeJ_P0058310 Cep250 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007221.1 MGP_C3HHeJ_G0005916.1 mouse_genomes_project 2 118289469 118303575 + D330050G23Rik lincRNA lincRNA MGP_C3HHeJ_T0007222.1 MGP_C3HHeJ_G0005916.1 mouse_genomes_project 2 118289492 118303410 + D330050G23Rik lincRNA lincRNA MGP_C3HHeJ_T0007223.1 MGP_C3HHeJ_G0005916.1 mouse_genomes_project 2 118289511 118295455 + D330050G23Rik lincRNA lincRNA MGP_C3HHeJ_T0101390.1 MGP_C3HHeJ_G0039440.1 mouse_genomes_project 2 36994376 37011111 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013571.1 MGP_C3HHeJ_G0011675.1 mouse_genomes_project 2 112576725 112672999 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000995.1 MGP_C3HHeJ_G0000932.1 mouse_genomes_project 2 8418540 8421212 - TEC TEC MGP_C3HHeJ_T0057061.1 MGP_C3HHeJ_G0026157.1 mouse_genomes_project 2 128150562 128163924 + MGP_C3HHeJ_P0057061 Dtwd1 protein_coding protein_coding MGP_C3HHeJ_T0057062.1 MGP_C3HHeJ_G0026157.1 mouse_genomes_project 2 128152966 128163927 + MGP_C3HHeJ_P0057062 Dtwd1 protein_coding protein_coding MGP_C3HHeJ_T0058378.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461375 159463130 + MGP_C3HHeJ_P0058378 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0058379.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461569 159463127 + MGP_C3HHeJ_P0058379 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0058380.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461573 159463116 + MGP_C3HHeJ_P0058380 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0058381.1 MGP_C3HHeJ_G0026477.1 mouse_genomes_project 2 159461576 159463127 + MGP_C3HHeJ_P0058381 Romo1 protein_coding protein_coding MGP_C3HHeJ_T0017627.1 MGP_C3HHeJ_G0015224.1 mouse_genomes_project 2 122468921 122485724 + AV039307 processed_transcript processed_transcript MGP_C3HHeJ_T0017628.1 MGP_C3HHeJ_G0015224.1 mouse_genomes_project 2 122468933 122485858 + AV039307 processed_transcript processed_transcript MGP_C3HHeJ_T0017629.1 MGP_C3HHeJ_G0015224.1 mouse_genomes_project 2 122485401 122485725 + AV039307 processed_transcript processed_transcript MGP_C3HHeJ_T0058063.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156538962 156671507 - MGP_C3HHeJ_P0058063 Nol4l protein_coding protein_coding MGP_C3HHeJ_T0058064.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156549326 156579284 - Nol4l protein_coding processed_transcript MGP_C3HHeJ_T0058065.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156594654 156628834 - Nol4l protein_coding processed_transcript MGP_C3HHeJ_T0058066.1 MGP_C3HHeJ_G0026411.1 mouse_genomes_project 2 156598453 156615385 - Nol4l protein_coding processed_transcript MGP_C3HHeJ_T0055502.1 MGP_C3HHeJ_G0025742.1 mouse_genomes_project 2 87712679 87713609 + MGP_C3HHeJ_P0055502 protein_coding protein_coding MGP_C3HHeJ_T0010352.1 MGP_C3HHeJ_G0008485.1 mouse_genomes_project 2 94726261 94726326 + Mir129b miRNA miRNA MGP_C3HHeJ_T0054062.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33160766 33180295 - MGP_C3HHeJ_P0054062 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054063.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33165085 33180335 - protein_coding processed_transcript MGP_C3HHeJ_T0054064.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33174825 33176889 - MGP_C3HHeJ_P0054064 protein_coding protein_coding MGP_C3HHeJ_T0054065.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33174934 33176914 - protein_coding retained_intron MGP_C3HHeJ_T0054066.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33174946 33177658 - protein_coding processed_transcript MGP_C3HHeJ_T0054067.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33176299 33180350 - protein_coding retained_intron MGP_C3HHeJ_T0054068.1 MGP_C3HHeJ_G0025380.1 mouse_genomes_project 2 33176904 33180315 - protein_coding processed_transcript MGP_C3HHeJ_T0059342.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184719957 184724758 + MGP_C3HHeJ_P0059342 Adrm1 protein_coding protein_coding MGP_C3HHeJ_T0059343.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720067 184720911 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059344.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720078 184724756 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059345.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720078 184721753 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059346.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720086 184724607 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059347.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720131 184724758 + Adrm1 protein_coding processed_transcript MGP_C3HHeJ_T0059348.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184720625 184724756 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0059349.1 MGP_C3HHeJ_G0026704.1 mouse_genomes_project 2 184723826 184724754 + Adrm1 protein_coding retained_intron MGP_C3HHeJ_T0001043.1 MGP_C3HHeJ_G0000980.1 mouse_genomes_project 2 37084527 37085300 - TEC TEC MGP_C3HHeJ_T0059004.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170435425 170586255 - MGP_C3HHeJ_P0059004 Prex1 protein_coding protein_coding MGP_C3HHeJ_T0059005.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170436053 170451148 - MGP_C3HHeJ_P0059005 Prex1 protein_coding protein_coding MGP_C3HHeJ_T0059006.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170437404 170442065 - Prex1 protein_coding processed_transcript MGP_C3HHeJ_T0059007.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170468769 170472179 - Prex1 protein_coding retained_intron MGP_C3HHeJ_T0059008.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170504035 170576417 - Prex1 protein_coding processed_transcript MGP_C3HHeJ_T0059009.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170514998 170586328 - Prex1 protein_coding retained_intron MGP_C3HHeJ_T0059010.1 MGP_C3HHeJ_G0026620.1 mouse_genomes_project 2 170515211 170586139 - Prex1 protein_coding retained_intron MGP_C3HHeJ_T0099199.1 MGP_C3HHeJ_G0037393.1 mouse_genomes_project 2 79038230 79038333 + Gm22606 snRNA snRNA MGP_C3HHeJ_T0055001.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72420982 72468175 - MGP_C3HHeJ_P0055001 Sp3 protein_coding protein_coding MGP_C3HHeJ_T0055002.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72421203 72468155 - MGP_C3HHeJ_P0055002 Sp3 protein_coding protein_coding MGP_C3HHeJ_T0055003.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72421207 72466526 - Sp3 protein_coding processed_transcript MGP_C3HHeJ_T0055004.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72422867 72425672 - Sp3 protein_coding processed_transcript MGP_C3HHeJ_T0055005.1 MGP_C3HHeJ_G0025563.1 mouse_genomes_project 2 72431492 72457706 - Sp3 protein_coding processed_transcript MGP_C3HHeJ_T0003818.1 MGP_C3HHeJ_G0003414.1 mouse_genomes_project 2 2054321 2058175 + 4930551O13Rik antisense antisense MGP_C3HHeJ_T0007054.1 MGP_C3HHeJ_G0005782.1 mouse_genomes_project 2 6762488 6770607 - Gm13218 lincRNA lincRNA MGP_C3HHeJ_T0057242.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131224288 131248596 + MGP_C3HHeJ_P0057242 Polr1b protein_coding protein_coding MGP_C3HHeJ_T0057243.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131224348 131253748 + MGP_C3HHeJ_P0057243 Polr1b protein_coding protein_coding MGP_C3HHeJ_T0057244.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131243499 131246317 + Polr1b protein_coding processed_transcript MGP_C3HHeJ_T0057245.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131246481 131250790 + Polr1b protein_coding processed_transcript MGP_C3HHeJ_T0057246.1 MGP_C3HHeJ_G0026202.1 mouse_genomes_project 2 131249538 131251490 + Polr1b protein_coding processed_transcript MGP_C3HHeJ_T0017551.1 MGP_C3HHeJ_G0015180.1 mouse_genomes_project 2 48975193 49051342 + Gm13483 processed_transcript processed_transcript MGP_C3HHeJ_T0017552.1 MGP_C3HHeJ_G0015180.1 mouse_genomes_project 2 48975247 49121834 + Gm13483 processed_transcript processed_transcript MGP_C3HHeJ_T0058299.1 MGP_C3HHeJ_G0026467.1 mouse_genomes_project 2 159250026 159254394 - MGP_C3HHeJ_P0058299 Gdf5 protein_coding protein_coding MGP_C3HHeJ_T0013337.1 MGP_C3HHeJ_G0011441.1 mouse_genomes_project 2 30039876 30041282 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007133.1 MGP_C3HHeJ_G0005845.1 mouse_genomes_project 2 66373708 66413110 - Gm13598 lincRNA lincRNA MGP_C3HHeJ_T0007040.1 MGP_C3HHeJ_G0005772.1 mouse_genomes_project 2 1123346 1129527 + Gm13189 lincRNA lincRNA MGP_C3HHeJ_T0056174.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105361427 105441054 + MGP_C3HHeJ_P0056174 Cstf3 protein_coding protein_coding MGP_C3HHeJ_T0056175.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105361436 105385448 + Cstf3 protein_coding retained_intron MGP_C3HHeJ_T0056176.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105361522 105383455 + Cstf3 protein_coding retained_intron MGP_C3HHeJ_T0056177.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105398280 105436403 + MGP_C3HHeJ_P0056177 Cstf3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056178.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105431136 105439064 + Cstf3 protein_coding processed_transcript MGP_C3HHeJ_T0056180.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105438761 105439805 + Cstf3 protein_coding processed_transcript MGP_C3HHeJ_T0056181.1 MGP_C3HHeJ_G0025939.1 mouse_genomes_project 2 105439291 105440364 + Cstf3 protein_coding processed_transcript MGP_C3HHeJ_T0059086.1 MGP_C3HHeJ_G0026634.1 mouse_genomes_project 2 171553415 171576755 - MGP_C3HHeJ_P0059086 Ube2v1 protein_coding protein_coding MGP_C3HHeJ_T0059087.1 MGP_C3HHeJ_G0026634.1 mouse_genomes_project 2 171560699 171576758 - Ube2v1 protein_coding retained_intron MGP_C3HHeJ_T0052102.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2831483 2881106 - MGP_C3HHeJ_P0052102 Cdc123 protein_coding protein_coding MGP_C3HHeJ_T0052103.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2831854 2835788 - Cdc123 protein_coding processed_transcript MGP_C3HHeJ_T0052104.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2835550 2841557 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052105.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2842014 2847957 - Cdc123 protein_coding processed_transcript MGP_C3HHeJ_T0052106.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2842133 2869086 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052107.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2846689 2869581 - MGP_C3HHeJ_P0052107 Cdc123 protein_coding protein_coding MGP_C3HHeJ_T0052108.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2847852 2880883 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052109.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2857613 2859608 - Cdc123 protein_coding retained_intron MGP_C3HHeJ_T0052110.1 MGP_C3HHeJ_G0025056.1 mouse_genomes_project 2 2859304 2880793 - Cdc123 protein_coding processed_transcript MGP_C3HHeJ_T0057037.1 MGP_C3HHeJ_G0026152.1 mouse_genomes_project 2 127707577 127754703 - MGP_C3HHeJ_P0057037 Secisbp2l protein_coding protein_coding MGP_C3HHeJ_T0057038.1 MGP_C3HHeJ_G0026152.1 mouse_genomes_project 2 127715371 127730953 - MGP_C3HHeJ_P0057038 Secisbp2l protein_coding protein_coding MGP_C3HHeJ_T0057039.1 MGP_C3HHeJ_G0026152.1 mouse_genomes_project 2 127720992 127722881 - Secisbp2l protein_coding retained_intron MGP_C3HHeJ_T0099226.1 MGP_C3HHeJ_G0037420.1 mouse_genomes_project 2 161151502 161151598 + Gm23463 snRNA snRNA MGP_C3HHeJ_T0001057.1 MGP_C3HHeJ_G0000994.1 mouse_genomes_project 2 78636637 78769031 + TEC TEC MGP_C3HHeJ_T0013412.1 MGP_C3HHeJ_G0011516.1 mouse_genomes_project 2 56327862 56328405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052761.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22920469 22921841 - Ssna1 protein_coding processed_transcript MGP_C3HHeJ_T0052762.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22920469 22921847 - MGP_C3HHeJ_P0052762 Ssna1 protein_coding protein_coding MGP_C3HHeJ_T0052763.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22920516 22921869 - Ssna1 protein_coding processed_transcript MGP_C3HHeJ_T0052764.1 MGP_C3HHeJ_G0025168.1 mouse_genomes_project 2 22921136 22921835 - Ssna1 protein_coding processed_transcript MGP_C3HHeJ_T0099209.1 MGP_C3HHeJ_G0037403.1 mouse_genomes_project 2 119550872 119551030 - Gm25308 snRNA snRNA MGP_C3HHeJ_T0007263.1 MGP_C3HHeJ_G0005950.1 mouse_genomes_project 2 149320746 149324922 + 4933406D12Rik lincRNA lincRNA MGP_C3HHeJ_T0003842.1 MGP_C3HHeJ_G0003435.1 mouse_genomes_project 2 18918516 18945920 - Gm13327 antisense antisense MGP_C3HHeJ_T0010376.1 MGP_C3HHeJ_G0008509.1 mouse_genomes_project 2 135878160 135878247 + Mir3090 miRNA miRNA MGP_C3HHeJ_T0004095.1 MGP_C3HHeJ_G0003615.1 mouse_genomes_project 2 169702060 169704083 + Gm11465 antisense antisense MGP_C3HHeJ_T0054610.1 MGP_C3HHeJ_G0025493.1 mouse_genomes_project 2 59253877 59344846 - MGP_C3HHeJ_P0054610 Ly75 protein_coding protein_coding MGP_C3HHeJ_T0054611.1 MGP_C3HHeJ_G0025493.1 mouse_genomes_project 2 59255534 59344774 - MGP_C3HHeJ_P0054611 Ly75 protein_coding protein_coding MGP_C3HHeJ_T0057701.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147193020 147251277 - MGP_C3HHeJ_P0057701 Dzank1 protein_coding protein_coding MGP_C3HHeJ_T0057702.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147193022 147251293 - MGP_C3HHeJ_P0057702 Dzank1 protein_coding protein_coding MGP_C3HHeJ_T0057703.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147231807 147251243 - Dzank1 protein_coding retained_intron MGP_C3HHeJ_T0057704.1 MGP_C3HHeJ_G0026305.1 mouse_genomes_project 2 147245431 147250527 - Dzank1 protein_coding processed_transcript MGP_C3HHeJ_T0059120.1 MGP_C3HHeJ_G0026643.1 mouse_genomes_project 2 172212935 172214901 + MGP_C3HHeJ_P0059120 Mocs3 protein_coding protein_coding MGP_C3HHeJ_T0054849.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139637 69145678 + MGP_C3HHeJ_P0054849 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0054850.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139650 69147248 + MGP_C3HHeJ_P0054850 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0054851.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139664 69147248 + MGP_C3HHeJ_P0054851 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0054852.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139674 69142489 + Phospho2 protein_coding processed_transcript MGP_C3HHeJ_T0054853.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69139726 69151472 + Phospho2 protein_coding processed_transcript MGP_C3HHeJ_T0054854.1 MGP_C3HHeJ_G0025537.1 mouse_genomes_project 2 69140989 69147247 + MGP_C3HHeJ_P0054854 Phospho2 protein_coding protein_coding MGP_C3HHeJ_T0013393.1 MGP_C3HHeJ_G0011497.1 mouse_genomes_project 2 50256611 50257714 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054599.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59168682 59208012 + MGP_C3HHeJ_P0054599 March7 protein_coding protein_coding MGP_C3HHeJ_T0054600.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59168708 59209477 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054601.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59168868 59206774 + MGP_C3HHeJ_P0054601 March7 protein_coding protein_coding MGP_C3HHeJ_T0054602.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59183578 59206758 + MGP_C3HHeJ_P0054602 March7 protein_coding protein_coding MGP_C3HHeJ_T0054603.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59190908 59193200 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054604.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59195560 59206758 + MGP_C3HHeJ_P0054604 March7 protein_coding protein_coding MGP_C3HHeJ_T0054605.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59195694 59201941 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054606.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59201875 59206756 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0054607.1 MGP_C3HHeJ_G0025491.1 mouse_genomes_project 2 59206143 59206758 + March7 protein_coding processed_transcript MGP_C3HHeJ_T0055929.1 MGP_C3HHeJ_G0025891.1 mouse_genomes_project 2 93029410 93044929 + MGP_C3HHeJ_P0055929 Chst1 protein_coding protein_coding MGP_C3HHeJ_T0010324.1 MGP_C3HHeJ_G0008457.1 mouse_genomes_project 2 36959880 36960006 - Gm27634 miRNA miRNA MGP_C3HHeJ_T0052927.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23348118 23351672 + MGP_C3HHeJ_P0052927 Lcn5 protein_coding protein_coding MGP_C3HHeJ_T0052928.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23348121 23351816 + MGP_C3HHeJ_P0052928 Lcn5 protein_coding protein_coding MGP_C3HHeJ_T0052929.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23348121 23352148 + MGP_C3HHeJ_P0052929 Lcn5 protein_coding protein_coding MGP_C3HHeJ_T0052930.1 MGP_C3HHeJ_G0025197.1 mouse_genomes_project 2 23351088 23351812 + Lcn5 protein_coding processed_transcript MGP_C3HHeJ_T0056284.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110889359 110989223 + MGP_C3HHeJ_P0056284 Lgr4 protein_coding protein_coding MGP_C3HHeJ_T0056285.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110889359 110989224 + MGP_C3HHeJ_P0056285 Lgr4 protein_coding protein_coding MGP_C3HHeJ_T0056286.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110949871 110972692 + Lgr4 protein_coding processed_transcript MGP_C3HHeJ_T0056287.1 MGP_C3HHeJ_G0025962.1 mouse_genomes_project 2 110975344 110976277 + Lgr4 protein_coding retained_intron MGP_C3HHeJ_T0010383.1 MGP_C3HHeJ_G0008516.1 mouse_genomes_project 2 155954656 155954716 + Mir5622 miRNA miRNA MGP_C3HHeJ_T0055277.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512710 83547614 + Itgav protein_coding retained_intron MGP_C3HHeJ_T0055278.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512710 83601099 + MGP_C3HHeJ_P0055278 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055279.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512765 83537247 + MGP_C3HHeJ_P0055279 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055280.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512770 83529606 + Itgav protein_coding processed_transcript MGP_C3HHeJ_T0055281.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512779 83537675 + Itgav protein_coding retained_intron MGP_C3HHeJ_T0055282.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512840 83514101 + Itgav protein_coding processed_transcript MGP_C3HHeJ_T0055283.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83512868 83601099 + MGP_C3HHeJ_P0055283 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055284.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83596033 83598169 + MGP_C3HHeJ_P0055284 Itgav protein_coding protein_coding MGP_C3HHeJ_T0055285.1 MGP_C3HHeJ_G0025624.1 mouse_genomes_project 2 83597104 83601099 + MGP_C3HHeJ_P0055285 Itgav protein_coding protein_coding MGP_C3HHeJ_T0054174.1 MGP_C3HHeJ_G0025403.1 mouse_genomes_project 2 34835018 34835948 + MGP_C3HHeJ_P0054174 Olfr344 protein_coding protein_coding MGP_C3HHeJ_T0056737.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122247744 122303885 + MGP_C3HHeJ_P0056737 protein_coding protein_coding MGP_C3HHeJ_T0056738.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122247842 122343930 + MGP_C3HHeJ_P0056738 protein_coding protein_coding MGP_C3HHeJ_T0056739.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122247842 122342508 + MGP_C3HHeJ_P0056739 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056740.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122307339 122343930 + MGP_C3HHeJ_P0056740 protein_coding protein_coding MGP_C3HHeJ_T0056741.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122326941 122343680 + MGP_C3HHeJ_P0056741 protein_coding protein_coding MGP_C3HHeJ_T0056742.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122330192 122359701 + MGP_C3HHeJ_P0056742 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056743.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122341561 122343728 + protein_coding retained_intron MGP_C3HHeJ_T0056744.1 MGP_C3HHeJ_G0026092.1 mouse_genomes_project 2 122343115 122357171 + protein_coding processed_transcript MGP_C3HHeJ_T0003962.1 MGP_C3HHeJ_G0003521.1 mouse_genomes_project 2 90794239 90800088 + 4933423P22Rik antisense antisense MGP_C3HHeJ_T0003963.1 MGP_C3HHeJ_G0003521.1 mouse_genomes_project 2 90794253 90803433 + 4933423P22Rik antisense antisense MGP_C3HHeJ_T0013418.1 MGP_C3HHeJ_G0011522.1 mouse_genomes_project 2 58055522 58056047 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054188.1 MGP_C3HHeJ_G0025416.1 mouse_genomes_project 2 35220027 35220975 + MGP_C3HHeJ_P0054188 Olfr356 protein_coding protein_coding MGP_C3HHeJ_T0058278.1 MGP_C3HHeJ_G0026464.1 mouse_genomes_project 2 159133000 159140300 - MGP_C3HHeJ_P0058278 Fam83c protein_coding protein_coding MGP_C3HHeJ_T0013284.1 MGP_C3HHeJ_G0011388.1 mouse_genomes_project 2 9738435 9738835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013403.1 MGP_C3HHeJ_G0011507.1 mouse_genomes_project 2 53130461 53131936 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100435.1 MGP_C3HHeJ_G0038629.1 mouse_genomes_project 2 24385556 24385683 - Snora43 snoRNA snoRNA MGP_C3HHeJ_T0054057.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33116215 33136447 - MGP_C3HHeJ_P0054057 Phf19 protein_coding protein_coding MGP_C3HHeJ_T0054058.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33116242 33126611 - Phf19 protein_coding processed_transcript MGP_C3HHeJ_T0054059.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33120540 33127366 - Phf19 protein_coding processed_transcript MGP_C3HHeJ_T0054060.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33121427 33136497 - Phf19 protein_coding retained_intron MGP_C3HHeJ_T0054061.1 MGP_C3HHeJ_G0025379.1 mouse_genomes_project 2 33129556 33136488 - MGP_C3HHeJ_P0054061 Phf19 protein_coding protein_coding MGP_C3HHeJ_T0003979.1 MGP_C3HHeJ_G0003529.1 mouse_genomes_project 2 106509218 106510318 + Gm13954 antisense antisense MGP_C3HHeJ_T0013324.1 MGP_C3HHeJ_G0011428.1 mouse_genomes_project 2 22296689 22297335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007314.1 MGP_C3HHeJ_G0005993.1 mouse_genomes_project 2 171637838 171678290 + A530013C23Rik lincRNA lincRNA MGP_C3HHeJ_T0007315.1 MGP_C3HHeJ_G0005993.1 mouse_genomes_project 2 171637842 171644452 + A530013C23Rik lincRNA lincRNA MGP_C3HHeJ_T0056316.1 MGP_C3HHeJ_G0025976.1 mouse_genomes_project 2 112282185 112283127 + MGP_C3HHeJ_P0056316 protein_coding protein_coding MGP_C3HHeJ_T0017632.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124539104 124555595 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017633.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124539964 124558071 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017634.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124539966 124555595 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017635.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124541971 124558072 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017636.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124541973 124555706 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017637.1 MGP_C3HHeJ_G0015226.1 mouse_genomes_project 2 124545778 124558931 + 4930417H01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0052707.1 MGP_C3HHeJ_G0025155.1 mouse_genomes_project 2 22829312 22831894 + MGP_C3HHeJ_P0052707 Nrarp protein_coding protein_coding MGP_C3HHeJ_T0057143.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129349811 129364376 + Stard7 protein_coding processed_transcript MGP_C3HHeJ_T0057144.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129350175 129378768 + MGP_C3HHeJ_P0057144 Stard7 protein_coding protein_coding MGP_C3HHeJ_T0057145.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129350297 129378761 + MGP_C3HHeJ_P0057145 Stard7 protein_coding protein_coding MGP_C3HHeJ_T0057146.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129364025 129375648 + Stard7 protein_coding retained_intron MGP_C3HHeJ_T0057147.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129369840 129377137 + Stard7 protein_coding retained_intron MGP_C3HHeJ_T0057148.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129371834 129377162 + Stard7 protein_coding processed_transcript MGP_C3HHeJ_T0057149.1 MGP_C3HHeJ_G0026174.1 mouse_genomes_project 2 129371836 129377191 + Stard7 protein_coding processed_transcript MGP_C3HHeJ_T0004020.1 MGP_C3HHeJ_G0003560.1 mouse_genomes_project 2 134503925 134511882 + AV099323 antisense antisense MGP_C3HHeJ_T0053472.1 MGP_C3HHeJ_G0025294.1 mouse_genomes_project 2 28180412 28208023 + MGP_C3HHeJ_P0053472 Gm28035 protein_coding protein_coding MGP_C3HHeJ_T0053473.1 MGP_C3HHeJ_G0025294.1 mouse_genomes_project 2 28180419 28208028 + MGP_C3HHeJ_P0053473 Gm28035 protein_coding protein_coding MGP_C3HHeJ_T0017523.1 MGP_C3HHeJ_G0015163.1 mouse_genomes_project 2 23471604 23482980 - Gm13538 processed_transcript processed_transcript MGP_C3HHeJ_T0053098.1 MGP_C3HHeJ_G0025229.1 mouse_genomes_project 2 24420858 24424467 - MGP_C3HHeJ_P0053098 Lcn4 protein_coding protein_coding MGP_C3HHeJ_T0052529.1 MGP_C3HHeJ_G0025125.1 mouse_genomes_project 2 20120494 20193604 + MGP_C3HHeJ_P0052529 Gad2 protein_coding protein_coding MGP_C3HHeJ_T0052530.1 MGP_C3HHeJ_G0025125.1 mouse_genomes_project 2 20121593 20128291 + Gad2 protein_coding processed_transcript MGP_C3HHeJ_T0017671.1 MGP_C3HHeJ_G0015245.1 mouse_genomes_project 2 160193380 160212094 - 5430405H02Rik processed_transcript antisense MGP_C3HHeJ_T0017672.1 MGP_C3HHeJ_G0015245.1 mouse_genomes_project 2 160201459 160212025 - 5430405H02Rik processed_transcript antisense MGP_C3HHeJ_T0017673.1 MGP_C3HHeJ_G0015245.1 mouse_genomes_project 2 160201459 160212076 - 5430405H02Rik processed_transcript antisense MGP_C3HHeJ_T0056926.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123648900 123721838 + MGP_C3HHeJ_P0056926 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056927.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649315 123720587 + MGP_C3HHeJ_P0056927 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056928.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649364 123702586 + Ctdspl2 protein_coding retained_intron MGP_C3HHeJ_T0056929.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649384 123720811 + Ctdspl2 protein_coding processed_transcript MGP_C3HHeJ_T0056930.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649390 123702183 + Ctdspl2 protein_coding processed_transcript MGP_C3HHeJ_T0056931.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649390 123698774 + Ctdspl2 protein_coding retained_intron MGP_C3HHeJ_T0056932.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123649563 123718926 + MGP_C3HHeJ_P0056932 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056933.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123661691 123721787 + MGP_C3HHeJ_P0056933 Ctdspl2 protein_coding protein_coding MGP_C3HHeJ_T0056934.1 MGP_C3HHeJ_G0026121.1 mouse_genomes_project 2 123671026 123712197 + Ctdspl2 protein_coding retained_intron MGP_C3HHeJ_T0056957.1 MGP_C3HHeJ_G0026132.1 mouse_genomes_project 2 124040595 124074925 + MGP_C3HHeJ_P0056957 Duox1 protein_coding protein_coding MGP_C3HHeJ_T0098247.1 MGP_C3HHeJ_G0036459.1 mouse_genomes_project 2 107972933 107973203 - Gm24885 ribozyme ribozyme MGP_C3HHeJ_T0013484.1 MGP_C3HHeJ_G0011588.1 mouse_genomes_project 2 82328561 82329090 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007066.1 MGP_C3HHeJ_G0005792.1 mouse_genomes_project 2 17200225 17210793 - Gm13346 lincRNA lincRNA MGP_C3HHeJ_T0057657.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145737784 145747586 + MGP_C3HHeJ_P0057657 Snrpb2 protein_coding protein_coding MGP_C3HHeJ_T0057658.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145737806 145740480 + Snrpb2 protein_coding retained_intron MGP_C3HHeJ_T0057659.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145737876 145744157 + MGP_C3HHeJ_P0057659 Snrpb2 protein_coding protein_coding MGP_C3HHeJ_T0057660.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145739147 145744157 + Snrpb2 protein_coding retained_intron MGP_C3HHeJ_T0057661.1 MGP_C3HHeJ_G0026293.1 mouse_genomes_project 2 145742918 145747586 + Snrpb2 protein_coding retained_intron MGP_C3HHeJ_T0053744.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30334232 30335929 - Uck1 protein_coding retained_intron MGP_C3HHeJ_T0053745.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30335109 30339276 - MGP_C3HHeJ_P0053745 Uck1 protein_coding protein_coding MGP_C3HHeJ_T0053746.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30335528 30338904 - MGP_C3HHeJ_P0053746 Uck1 protein_coding protein_coding MGP_C3HHeJ_T0053747.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30337106 30338893 - Uck1 protein_coding retained_intron MGP_C3HHeJ_T0053748.1 MGP_C3HHeJ_G0025334.1 mouse_genomes_project 2 30337355 30339321 - Uck1 protein_coding retained_intron MGP_C3HHeJ_T0010341.1 MGP_C3HHeJ_G0008474.1 mouse_genomes_project 2 76687737 76687819 - Gm44360 miRNA miRNA MGP_C3HHeJ_T0055486.1 MGP_C3HHeJ_G0025734.1 mouse_genomes_project 2 87478992 87479964 + MGP_C3HHeJ_P0055486 Olfr1123 protein_coding protein_coding MGP_C3HHeJ_T0004105.1 MGP_C3HHeJ_G0003625.1 mouse_genomes_project 2 176533192 176548412 + Gm14273 antisense antisense MGP_C3HHeJ_T0101892.1 MGP_C3HHeJ_G0039857.1 mouse_genomes_project 2 85445837 85446563 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055511.1 MGP_C3HHeJ_G0025750.1 mouse_genomes_project 2 87793488 87794421 - MGP_C3HHeJ_P0055511 Olfr1137 protein_coding protein_coding MGP_C3HHeJ_T0053984.1 MGP_C3HHeJ_G0025369.1 mouse_genomes_project 2 31706989 31788950 - MGP_C3HHeJ_P0053984 Lmx1b protein_coding protein_coding MGP_C3HHeJ_T0053985.1 MGP_C3HHeJ_G0025369.1 mouse_genomes_project 2 31710346 31788937 - MGP_C3HHeJ_P0053985 Lmx1b protein_coding protein_coding MGP_C3HHeJ_T0053986.1 MGP_C3HHeJ_G0025369.1 mouse_genomes_project 2 31713177 31779889 - Lmx1b protein_coding processed_transcript MGP_C3HHeJ_T0098105.1 MGP_C3HHeJ_G0036317.1 mouse_genomes_project 2 93849138 93849241 - Gm23380 rRNA rRNA MGP_C3HHeJ_T0055720.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91420442 91454569 + MGP_C3HHeJ_P0055720 Spi1 protein_coding protein_coding MGP_C3HHeJ_T0055721.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91420460 91430637 + Spi1 protein_coding processed_transcript MGP_C3HHeJ_T0055722.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91436422 91455959 + MGP_C3HHeJ_P0055722 Spi1 protein_coding protein_coding MGP_C3HHeJ_T0055723.1 MGP_C3HHeJ_G0025862.1 mouse_genomes_project 2 91437106 91453518 + MGP_C3HHeJ_P0055723 Spi1 protein_coding protein_coding MGP_C3HHeJ_T0100474.1 MGP_C3HHeJ_G0038668.1 mouse_genomes_project 2 105349679 105349815 + Gm22439 snoRNA snoRNA MGP_C3HHeJ_T0013622.1 MGP_C3HHeJ_G0011726.1 mouse_genomes_project 2 135264553 135265555 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057627.1 MGP_C3HHeJ_G0026287.1 mouse_genomes_project 2 142720913 142722439 + MGP_C3HHeJ_P0057627 Gm17374 protein_coding protein_coding MGP_C3HHeJ_T0100442.1 MGP_C3HHeJ_G0038636.1 mouse_genomes_project 2 30303946 30304031 + Gm25632 snoRNA snoRNA MGP_C3HHeJ_T0013551.1 MGP_C3HHeJ_G0011655.1 mouse_genomes_project 2 104614489 104614750 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100503.1 MGP_C3HHeJ_G0038697.1 mouse_genomes_project 2 161824875 161825006 - Gm24411 snoRNA snoRNA MGP_C3HHeJ_T0004012.1 MGP_C3HHeJ_G0003554.1 mouse_genomes_project 2 131507260 131513111 + Il1bos antisense antisense MGP_C3HHeJ_T0004013.1 MGP_C3HHeJ_G0003554.1 mouse_genomes_project 2 131507265 131513096 + Il1bos antisense antisense MGP_C3HHeJ_T0004014.1 MGP_C3HHeJ_G0003554.1 mouse_genomes_project 2 131510491 131512440 + Il1bos antisense antisense MGP_C3HHeJ_T0057954.1 MGP_C3HHeJ_G0026374.1 mouse_genomes_project 2 155399313 155405862 - MGP_C3HHeJ_P0057954 Trib3 protein_coding protein_coding MGP_C3HHeJ_T0057955.1 MGP_C3HHeJ_G0026374.1 mouse_genomes_project 2 155401639 155405818 - Trib3 protein_coding processed_transcript MGP_C3HHeJ_T0057956.1 MGP_C3HHeJ_G0026374.1 mouse_genomes_project 2 155404793 155405800 - Trib3 protein_coding retained_intron MGP_C3HHeJ_T0057970.1 MGP_C3HHeJ_G0026385.1 mouse_genomes_project 2 155643519 155643720 + MGP_C3HHeJ_P0057970 Gm17416 protein_coding protein_coding MGP_C3HHeJ_T0059178.1 MGP_C3HHeJ_G0026656.1 mouse_genomes_project 2 174862497 175018302 + MGP_C3HHeJ_P0059178 Dok5 protein_coding protein_coding MGP_C3HHeJ_T0013276.1 MGP_C3HHeJ_G0011380.1 mouse_genomes_project 2 6423446 6423876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001010.1 MGP_C3HHeJ_G0000947.1 mouse_genomes_project 2 10489775 10491639 - TEC TEC MGP_C3HHeJ_T0055463.1 MGP_C3HHeJ_G0025712.1 mouse_genomes_project 2 86812094 86813087 + MGP_C3HHeJ_P0055463 Olfr1094 protein_coding protein_coding MGP_C3HHeJ_T0052449.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16177857 16183374 + Bmi1 protein_coding processed_transcript MGP_C3HHeJ_T0052450.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16177909 16185490 + MGP_C3HHeJ_P0052450 Bmi1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052451.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16178783 16184685 + MGP_C3HHeJ_P0052451 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0052452.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16181346 16185022 + MGP_C3HHeJ_P0052452 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0052453.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16182002 16184039 + MGP_C3HHeJ_P0052453 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0052454.1 MGP_C3HHeJ_G0025109.1 mouse_genomes_project 2 16182115 16183865 + MGP_C3HHeJ_P0052454 Bmi1 protein_coding protein_coding MGP_C3HHeJ_T0010306.1 MGP_C3HHeJ_G0008439.1 mouse_genomes_project 2 27751173 27751270 - Mir219a-2 miRNA miRNA MGP_C3HHeJ_T0017701.1 MGP_C3HHeJ_G0015258.1 mouse_genomes_project 2 177287649 177288102 - Gm20490 processed_transcript processed_transcript MGP_C3HHeJ_T0007068.1 MGP_C3HHeJ_G0005794.1 mouse_genomes_project 2 20263675 20271022 + 1700092C17Rik lincRNA lincRNA MGP_C3HHeJ_T0007069.1 MGP_C3HHeJ_G0005794.1 mouse_genomes_project 2 20270720 20270990 + 1700092C17Rik lincRNA lincRNA MGP_C3HHeJ_T0056905.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123215504 123447057 - MGP_C3HHeJ_P0056905 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056906.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123215504 123256331 - MGP_C3HHeJ_P0056906 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056907.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123215504 123501184 - MGP_C3HHeJ_P0056907 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056908.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123217713 123225638 - MGP_C3HHeJ_P0056908 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056909.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218271 123447057 - MGP_C3HHeJ_P0056909 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056910.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218273 123501120 - MGP_C3HHeJ_P0056910 Frmd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056911.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218274 123501089 - MGP_C3HHeJ_P0056911 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056912.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123218622 123500928 - MGP_C3HHeJ_P0056912 Frmd5 protein_coding protein_coding MGP_C3HHeJ_T0056913.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123219015 123228682 - Frmd5 protein_coding processed_transcript MGP_C3HHeJ_T0056914.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123231306 123501154 - Frmd5 protein_coding retained_intron MGP_C3HHeJ_T0056915.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123238839 123500969 - MGP_C3HHeJ_P0056915 Frmd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056916.1 MGP_C3HHeJ_G0026118.1 mouse_genomes_project 2 123238891 123253903 - Frmd5 protein_coding processed_transcript MGP_C3HHeJ_T0058956.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169197690 169268993 - MGP_C3HHeJ_P0058956 Slc13a3 protein_coding protein_coding MGP_C3HHeJ_T0058957.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169197957 169268993 - MGP_C3HHeJ_P0058957 Slc13a3 protein_coding protein_coding MGP_C3HHeJ_T0058958.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169199367 169201718 - Slc13a3 protein_coding retained_intron MGP_C3HHeJ_T0058959.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169204535 169212933 - Slc13a3 protein_coding retained_intron MGP_C3HHeJ_T0058960.1 MGP_C3HHeJ_G0026612.1 mouse_genomes_project 2 169238866 169268962 - Slc13a3 protein_coding retained_intron MGP_C3HHeJ_T0057691.1 MGP_C3HHeJ_G0026304.1 mouse_genomes_project 2 147086989 147091715 + MGP_C3HHeJ_P0057691 Pet117 protein_coding protein_coding MGP_C3HHeJ_T0013413.1 MGP_C3HHeJ_G0011517.1 mouse_genomes_project 2 56560243 56560420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100478.1 MGP_C3HHeJ_G0038672.1 mouse_genomes_project 2 113728121 113728250 + Gm22676 snoRNA snoRNA MGP_C3HHeJ_T0055796.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91621887 91805969 - MGP_C3HHeJ_P0055796 1110051M20Rik protein_coding protein_coding MGP_C3HHeJ_T0055797.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91625721 91805961 - MGP_C3HHeJ_P0055797 1110051M20Rik protein_coding protein_coding MGP_C3HHeJ_T0055798.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91630351 91631751 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055799.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91654524 91805990 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055800.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91744325 91806016 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055801.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91780138 91805984 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055802.1 MGP_C3HHeJ_G0025870.1 mouse_genomes_project 2 91780187 91806051 - 1110051M20Rik protein_coding processed_transcript MGP_C3HHeJ_T0055089.1 MGP_C3HHeJ_G0025585.1 mouse_genomes_project 2 74249278 74274461 + MGP_C3HHeJ_P0055089 Gm28230 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057325.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132591422 132598424 - Pced1a protein_coding processed_transcript MGP_C3HHeJ_T0057326.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132591857 132598454 - MGP_C3HHeJ_P0057326 Pced1a protein_coding protein_coding MGP_C3HHeJ_T0057327.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132592380 132598457 - Pced1a protein_coding processed_transcript MGP_C3HHeJ_T0057328.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132592404 132598442 - Pced1a protein_coding retained_intron MGP_C3HHeJ_T0057329.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132593133 132598863 - MGP_C3HHeJ_P0057329 Pced1a protein_coding protein_coding MGP_C3HHeJ_T0057330.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132593144 132598877 - Pced1a protein_coding retained_intron MGP_C3HHeJ_T0057331.1 MGP_C3HHeJ_G0026223.1 mouse_genomes_project 2 132596064 132598486 - Pced1a protein_coding retained_intron MGP_C3HHeJ_T0054177.1 MGP_C3HHeJ_G0025406.1 mouse_genomes_project 2 35008308 35009247 + MGP_C3HHeJ_P0054177 Olfr347 protein_coding protein_coding MGP_C3HHeJ_T0054335.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43070350 43266133 - MGP_C3HHeJ_P0054335 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054336.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43070352 43370561 - MGP_C3HHeJ_P0054336 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054337.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43071068 43077294 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054338.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43076316 43077661 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054339.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43081426 43436872 - MGP_C3HHeJ_P0054339 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054340.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43138091 43436975 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054341.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43140226 43437368 - MGP_C3HHeJ_P0054341 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054342.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43261590 43334831 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054343.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43293197 43436947 - MGP_C3HHeJ_P0054343 Gtdc1 protein_coding protein_coding MGP_C3HHeJ_T0054344.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43300261 43436945 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0054345.1 MGP_C3HHeJ_G0025449.1 mouse_genomes_project 2 43302726 43436860 - Gtdc1 protein_coding processed_transcript MGP_C3HHeJ_T0057349.1 MGP_C3HHeJ_G0026230.1 mouse_genomes_project 2 132794551 132814194 - MGP_C3HHeJ_P0057349 Fastkd5 protein_coding protein_coding MGP_C3HHeJ_T0057350.1 MGP_C3HHeJ_G0026230.1 mouse_genomes_project 2 132794956 132797380 - MGP_C3HHeJ_P0057350 Fastkd5 protein_coding protein_coding MGP_C3HHeJ_T0055568.1 MGP_C3HHeJ_G0025802.1 mouse_genomes_project 2 89129751 89130687 - MGP_C3HHeJ_P0055568 Olfr1214 protein_coding protein_coding MGP_C3HHeJ_T0056492.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281834 120318547 + MGP_C3HHeJ_P0056492 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056493.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281837 120300235 + MGP_C3HHeJ_P0056493 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056494.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281854 120318666 + MGP_C3HHeJ_P0056494 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056495.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281857 120295106 + MGP_C3HHeJ_P0056495 Disp2 protein_coding protein_coding MGP_C3HHeJ_T0056496.1 MGP_C3HHeJ_G0026043.1 mouse_genomes_project 2 120281874 120295105 + Disp2 protein_coding retained_intron MGP_C3HHeJ_T0057631.1 MGP_C3HHeJ_G0026288.1 mouse_genomes_project 2 142742197 142775929 + MGP_C3HHeJ_P0057631 Ndufaf5 protein_coding protein_coding MGP_C3HHeJ_T0057632.1 MGP_C3HHeJ_G0026288.1 mouse_genomes_project 2 142742261 142743863 + Ndufaf5 protein_coding retained_intron MGP_C3HHeJ_T0057633.1 MGP_C3HHeJ_G0026288.1 mouse_genomes_project 2 142742578 142775872 + Ndufaf5 protein_coding processed_transcript MGP_C3HHeJ_T0003934.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72466700 72476375 + Sp3os antisense antisense MGP_C3HHeJ_T0003935.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72466700 72476140 + Sp3os antisense antisense MGP_C3HHeJ_T0003936.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72466792 72476244 + Sp3os antisense antisense MGP_C3HHeJ_T0003937.1 MGP_C3HHeJ_G0003503.1 mouse_genomes_project 2 72474938 72476305 + Sp3os antisense antisense MGP_C3HHeJ_T0059478.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185855658 185894689 - MGP_C3HHeJ_P0059478 Gmeb2 protein_coding protein_coding MGP_C3HHeJ_T0059479.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185857994 185883619 - MGP_C3HHeJ_P0059479 Gmeb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059480.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185858978 185860335 - Gmeb2 protein_coding retained_intron MGP_C3HHeJ_T0059481.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185860121 185893813 - MGP_C3HHeJ_P0059481 Gmeb2 protein_coding protein_coding MGP_C3HHeJ_T0059482.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185860141 185894427 - MGP_C3HHeJ_P0059482 Gmeb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059483.1 MGP_C3HHeJ_G0026733.1 mouse_genomes_project 2 185869781 185894685 - Gmeb2 protein_coding retained_intron MGP_C3HHeJ_T0056402.1 MGP_C3HHeJ_G0026022.1 mouse_genomes_project 2 115458991 115467014 - MGP_C3HHeJ_P0056402 Zfp770 protein_coding protein_coding MGP_C3HHeJ_T0056403.1 MGP_C3HHeJ_G0026022.1 mouse_genomes_project 2 115464104 115466985 - Zfp770 protein_coding processed_transcript MGP_C3HHeJ_T0003916.1 MGP_C3HHeJ_G0003490.1 mouse_genomes_project 2 65125987 65136134 - Gm13617 antisense antisense MGP_C3HHeJ_T0010386.1 MGP_C3HHeJ_G0008519.1 mouse_genomes_project 2 159734880 159734972 - Gm22759 miRNA miRNA MGP_C3HHeJ_T0001031.1 MGP_C3HHeJ_G0000968.1 mouse_genomes_project 2 31761301 31761580 + TEC TEC MGP_C3HHeJ_T0053927.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31046280 31082540 - MGP_C3HHeJ_P0053927 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053928.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31046284 31082899 - MGP_C3HHeJ_P0053928 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053929.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31050035 31062274 - MGP_C3HHeJ_P0053929 Lrsam1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053930.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31056289 31059244 - Lrsam1 protein_coding retained_intron MGP_C3HHeJ_T0053931.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075505 31082884 - MGP_C3HHeJ_P0053931 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053932.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075507 31082877 - MGP_C3HHeJ_P0053932 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053933.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075520 31081191 - MGP_C3HHeJ_P0053933 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053934.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31075524 31082536 - MGP_C3HHeJ_P0053934 Lrsam1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053935.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31078533 31082878 - MGP_C3HHeJ_P0053935 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053936.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31078540 31082878 - MGP_C3HHeJ_P0053936 Lrsam1 protein_coding protein_coding MGP_C3HHeJ_T0053937.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31081531 31082885 - Lrsam1 protein_coding processed_transcript MGP_C3HHeJ_T0053938.1 MGP_C3HHeJ_G0025361.1 mouse_genomes_project 2 31082358 31082891 - Lrsam1 protein_coding processed_transcript MGP_C3HHeJ_T0013302.1 MGP_C3HHeJ_G0011406.1 mouse_genomes_project 2 16060007 16060080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059396.1 MGP_C3HHeJ_G0026717.1 mouse_genomes_project 2 185287404 185295948 + MGP_C3HHeJ_P0059396 Gid8 protein_coding protein_coding MGP_C3HHeJ_T0059397.1 MGP_C3HHeJ_G0026717.1 mouse_genomes_project 2 185288974 185292027 + Gid8 protein_coding processed_transcript MGP_C3HHeJ_T0059398.1 MGP_C3HHeJ_G0026717.1 mouse_genomes_project 2 185289833 185295945 + MGP_C3HHeJ_P0059398 Gid8 protein_coding protein_coding MGP_C3HHeJ_T0055258.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80358795 80401969 + Gm4353 protein_coding retained_intron MGP_C3HHeJ_T0055260.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80382010 80401965 + MGP_C3HHeJ_P0055260 Gm4353 protein_coding protein_coding MGP_C3HHeJ_T0055262.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80382026 80399068 + MGP_C3HHeJ_P0055262 Gm4353 protein_coding protein_coding MGP_C3HHeJ_T0055263.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80382462 80389681 + Gm4353 protein_coding processed_transcript MGP_C3HHeJ_T0055264.1 MGP_C3HHeJ_G0025619.1 mouse_genomes_project 2 80387419 80396482 + Gm4353 protein_coding processed_transcript MGP_C3HHeJ_T0055469.1 MGP_C3HHeJ_G0025717.1 mouse_genomes_project 2 86969268 86970198 - MGP_C3HHeJ_P0055469 Olfr1101 protein_coding protein_coding MGP_C3HHeJ_T0058382.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464570 159498735 - MGP_C3HHeJ_P0058382 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058383.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464577 159498077 - MGP_C3HHeJ_P0058383 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058384.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464580 159498664 - MGP_C3HHeJ_P0058384 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058385.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159464580 159498646 - MGP_C3HHeJ_P0058385 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058386.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159465271 159498681 - MGP_C3HHeJ_P0058386 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058387.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159465271 159498673 - MGP_C3HHeJ_P0058387 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058388.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159466566 159482202 - MGP_C3HHeJ_P0058388 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058389.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159479037 159498639 - MGP_C3HHeJ_P0058389 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058390.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159479039 159482491 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058391.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159480021 159488135 - Rbm39 protein_coding processed_transcript MGP_C3HHeJ_T0058392.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159481192 159487046 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058393.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159482084 159498656 - MGP_C3HHeJ_P0058393 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058394.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159482198 159491447 - Rbm39 protein_coding processed_transcript MGP_C3HHeJ_T0058395.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159486436 159496228 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058396.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159488731 159495877 - Rbm39 protein_coding processed_transcript MGP_C3HHeJ_T0058397.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159491318 159498658 - MGP_C3HHeJ_P0058397 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058398.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159491417 159498644 - MGP_C3HHeJ_P0058398 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058399.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159491439 159496398 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058400.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159493180 159498409 - MGP_C3HHeJ_P0058400 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058401.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159493184 159498653 - MGP_C3HHeJ_P0058401 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058402.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159493269 159498735 - MGP_C3HHeJ_P0058402 Rbm39 protein_coding protein_coding MGP_C3HHeJ_T0058403.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159495654 159498693 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058404.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159495854 159498646 - MGP_C3HHeJ_P0058404 Rbm39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058405.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159497055 159498709 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0058406.1 MGP_C3HHeJ_G0026478.1 mouse_genomes_project 2 159497057 159498642 - Rbm39 protein_coding retained_intron MGP_C3HHeJ_T0013326.1 MGP_C3HHeJ_G0011430.1 mouse_genomes_project 2 23239591 23239832 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052926.1 MGP_C3HHeJ_G0025196.1 mouse_genomes_project 2 23343296 23346394 + MGP_C3HHeJ_P0052926 Lcn8 protein_coding protein_coding MGP_C3HHeJ_T0001071.1 MGP_C3HHeJ_G0001007.1 mouse_genomes_project 2 174055033 174056206 - TEC TEC MGP_C3HHeJ_T0001072.1 MGP_C3HHeJ_G0001007.1 mouse_genomes_project 2 174055146 174056006 - TEC TEC MGP_C3HHeJ_T0052245.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8932501 8993893 + MGP_C3HHeJ_P0052245 protein_coding protein_coding MGP_C3HHeJ_T0052247.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963670 8994269 + protein_coding processed_transcript MGP_C3HHeJ_T0052248.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963716 8979215 + protein_coding retained_intron MGP_C3HHeJ_T0052249.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963728 8994612 + protein_coding processed_transcript MGP_C3HHeJ_T0052250.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963784 8994626 + MGP_C3HHeJ_P0052250 protein_coding protein_coding MGP_C3HHeJ_T0052251.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8963893 8994045 + protein_coding processed_transcript MGP_C3HHeJ_T0052252.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964053 8980754 + MGP_C3HHeJ_P0052252 protein_coding protein_coding MGP_C3HHeJ_T0052253.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964100 8981041 + protein_coding retained_intron MGP_C3HHeJ_T0052254.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964118 8994630 + MGP_C3HHeJ_P0052254 protein_coding protein_coding MGP_C3HHeJ_T0052255.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964151 8994961 + MGP_C3HHeJ_P0052255 protein_coding protein_coding MGP_C3HHeJ_T0052256.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964151 8994045 + MGP_C3HHeJ_P0052256 protein_coding protein_coding MGP_C3HHeJ_T0052257.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964152 8994045 + MGP_C3HHeJ_P0052257 protein_coding protein_coding MGP_C3HHeJ_T0052258.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8964189 8993893 + MGP_C3HHeJ_P0052258 protein_coding protein_coding MGP_C3HHeJ_T0052259.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8978975 8980935 + protein_coding retained_intron MGP_C3HHeJ_T0052260.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8979079 8994061 + MGP_C3HHeJ_P0052260 protein_coding protein_coding MGP_C3HHeJ_T0052261.1 MGP_C3HHeJ_G0025080.1 mouse_genomes_project 2 8983812 8994612 + protein_coding retained_intron MGP_C3HHeJ_T0053966.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31267485 31476408 - MGP_C3HHeJ_P0053966 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053967.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31267489 31476408 - MGP_C3HHeJ_P0053967 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053968.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31267489 31476408 - MGP_C3HHeJ_P0053968 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053969.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31271041 31476408 - MGP_C3HHeJ_P0053969 Ralgps1 protein_coding protein_coding MGP_C3HHeJ_T0053970.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31277375 31292194 - Ralgps1 protein_coding processed_transcript MGP_C3HHeJ_T0053975.1 MGP_C3HHeJ_G0025365.1 mouse_genomes_project 2 31393364 31476408 - Ralgps1 protein_coding retained_intron MGP_C3HHeJ_T0013294.1 MGP_C3HHeJ_G0011398.1 mouse_genomes_project 2 13349634 13350247 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056602.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316153 121343204 - MGP_C3HHeJ_P0056602 Rpap1 protein_coding protein_coding MGP_C3HHeJ_T0056603.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316807 121343228 - MGP_C3HHeJ_P0056603 Rpap1 protein_coding protein_coding MGP_C3HHeJ_T0056604.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316808 121343237 - MGP_C3HHeJ_P0056604 Rpap1 protein_coding protein_coding MGP_C3HHeJ_T0056605.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316811 121343200 - MGP_C3HHeJ_P0056605 Rpap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056606.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121316814 121343220 - MGP_C3HHeJ_P0056606 Rpap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056607.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121321604 121343219 - Rpap1 protein_coding retained_intron MGP_C3HHeJ_T0056608.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121332664 121343214 - Rpap1 protein_coding retained_intron MGP_C3HHeJ_T0056609.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121332878 121336268 - Rpap1 protein_coding retained_intron MGP_C3HHeJ_T0056610.1 MGP_C3HHeJ_G0026072.1 mouse_genomes_project 2 121333217 121343229 - Rpap1 protein_coding processed_transcript MGP_C3HHeJ_T0100485.1 MGP_C3HHeJ_G0038679.1 mouse_genomes_project 2 132450019 132450152 + Gm24451 snoRNA snoRNA MGP_C3HHeJ_T0013422.1 MGP_C3HHeJ_G0011526.1 mouse_genomes_project 2 59050758 59051067 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059100.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171945952 171977313 - Fam65c protein_coding processed_transcript MGP_C3HHeJ_T0059101.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171945954 171977313 - MGP_C3HHeJ_P0059101 Fam65c protein_coding protein_coding MGP_C3HHeJ_T0059102.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171951989 171953687 - Fam65c protein_coding retained_intron MGP_C3HHeJ_T0059103.1 MGP_C3HHeJ_G0026638.1 mouse_genomes_project 2 171955701 171958247 - Fam65c protein_coding retained_intron MGP_C3HHeJ_T0017553.1 MGP_C3HHeJ_G0015181.1 mouse_genomes_project 2 51188918 51198772 + A430018G15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017554.1 MGP_C3HHeJ_G0015181.1 mouse_genomes_project 2 51188918 51195782 + A430018G15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0000990.1 MGP_C3HHeJ_G0000927.1 mouse_genomes_project 2 4006820 4017785 + TEC TEC MGP_C3HHeJ_T0055476.1 MGP_C3HHeJ_G0025724.1 mouse_genomes_project 2 87105519 87106458 - MGP_C3HHeJ_P0055476 Olfr259 protein_coding protein_coding MGP_C3HHeJ_T0054494.1 MGP_C3HHeJ_G0025472.1 mouse_genomes_project 2 52911372 52912832 - MGP_C3HHeJ_P0054494 Rprm protein_coding protein_coding MGP_C3HHeJ_T0056464.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120018736 120040457 - MGP_C3HHeJ_P0056464 Bmf protein_coding protein_coding MGP_C3HHeJ_T0056465.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120020211 120038326 - MGP_C3HHeJ_P0056465 Bmf protein_coding protein_coding MGP_C3HHeJ_T0056466.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120021949 120035354 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056467.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120022030 120036083 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056468.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120022397 120040432 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056469.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120035950 120037794 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056470.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120036002 120038366 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0056471.1 MGP_C3HHeJ_G0026036.1 mouse_genomes_project 2 120037675 120040445 - Bmf protein_coding processed_transcript MGP_C3HHeJ_T0057535.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135086180 135092601 - Trmt6 protein_coding retained_intron MGP_C3HHeJ_T0057536.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135086180 135098031 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0057537.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135086180 135098030 - MGP_C3HHeJ_P0057537 Trmt6 protein_coding protein_coding MGP_C3HHeJ_T0057538.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135092382 135097734 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0057539.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135092407 135094481 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0057540.1 MGP_C3HHeJ_G0026265.1 mouse_genomes_project 2 135093739 135097989 - Trmt6 protein_coding processed_transcript MGP_C3HHeJ_T0056404.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115788106 115930045 - MGP_C3HHeJ_P0056404 Dph6 protein_coding protein_coding MGP_C3HHeJ_T0056405.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115789669 115818361 - Dph6 protein_coding processed_transcript MGP_C3HHeJ_T0056406.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115789763 115930063 - MGP_C3HHeJ_P0056406 Dph6 protein_coding protein_coding MGP_C3HHeJ_T0056407.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115792721 115930120 - Dph6 protein_coding retained_intron MGP_C3HHeJ_T0056408.1 MGP_C3HHeJ_G0026023.1 mouse_genomes_project 2 115917340 115930063 - Dph6 protein_coding retained_intron MGP_C3HHeJ_T0099178.1 MGP_C3HHeJ_G0037372.1 mouse_genomes_project 2 22649540 22649647 - Gm25518 snRNA snRNA MGP_C3HHeJ_T0013455.1 MGP_C3HHeJ_G0011559.1 mouse_genomes_project 2 72440999 72441296 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101899.1 MGP_C3HHeJ_G0039864.1 mouse_genomes_project 2 86417807 86418749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057960.1 MGP_C3HHeJ_G0026377.1 mouse_genomes_project 2 155480217 155483287 - MGP_C3HHeJ_P0057960 Zcchc3 protein_coding protein_coding MGP_C3HHeJ_T0007229.1 MGP_C3HHeJ_G0005922.1 mouse_genomes_project 2 119597443 119598040 - Gm29233 lincRNA lincRNA MGP_C3HHeJ_T0101917.1 MGP_C3HHeJ_G0039882.1 mouse_genomes_project 2 90327994 90328924 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058670.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165130901 166297379 - MGP_C3HHeJ_P0058670 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058671.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165130901 166297379 - MGP_C3HHeJ_P0058671 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058672.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165135266 166297326 - MGP_C3HHeJ_P0058672 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058673.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165136417 166297379 - MGP_C3HHeJ_P0058673 Ptprt protein_coding protein_coding MGP_C3HHeJ_T0058674.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165308259 165413203 - Ptprt protein_coding processed_transcript MGP_C3HHeJ_T0058675.1 MGP_C3HHeJ_G0026528.1 mouse_genomes_project 2 165650269 165774349 - Ptprt protein_coding processed_transcript MGP_C3HHeJ_T0056760.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122479366 122597056 - MGP_C3HHeJ_P0056760 Ubr1 protein_coding protein_coding MGP_C3HHeJ_T0056761.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122481670 122490673 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056762.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122492196 122511328 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056763.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122523083 122535793 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056764.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122543622 122553118 - Ubr1 protein_coding processed_transcript MGP_C3HHeJ_T0056765.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122568177 122596954 - Ubr1 protein_coding retained_intron MGP_C3HHeJ_T0056766.1 MGP_C3HHeJ_G0026095.1 mouse_genomes_project 2 122588460 122597033 - Ubr1 protein_coding retained_intron MGP_C3HHeJ_T0055427.1 MGP_C3HHeJ_G0025677.1 mouse_genomes_project 2 85722596 85723520 + MGP_C3HHeJ_P0055427 Olfr1026 protein_coding protein_coding MGP_C3HHeJ_T0058850.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168549259 168552962 - Acot8 protein_coding retained_intron MGP_C3HHeJ_T0058851.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168549259 168564388 - MGP_C3HHeJ_P0058851 Acot8 protein_coding protein_coding MGP_C3HHeJ_T0058852.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168549259 168564388 - MGP_C3HHeJ_P0058852 Acot8 protein_coding protein_coding MGP_C3HHeJ_T0058853.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168552280 168564387 - MGP_C3HHeJ_P0058853 Acot8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058854.1 MGP_C3HHeJ_G0026592.1 mouse_genomes_project 2 168558958 168564328 - Acot8 protein_coding retained_intron MGP_C3HHeJ_T0055044.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73339259 73418325 - MGP_C3HHeJ_P0055044 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055045.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73339270 73418314 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055046.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73341572 73387462 - MGP_C3HHeJ_P0055046 Atf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055047.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73341672 73392130 - MGP_C3HHeJ_P0055047 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055048.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73349056 73418299 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055049.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73352498 73418216 - MGP_C3HHeJ_P0055049 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055050.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73368524 73418314 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055051.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73369094 73418279 - MGP_C3HHeJ_P0055051 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055052.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73369095 73418239 - MGP_C3HHeJ_P0055052 Atf2 protein_coding protein_coding MGP_C3HHeJ_T0055053.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73369389 73374260 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055054.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73387099 73418280 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055055.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73387192 73418314 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0055056.1 MGP_C3HHeJ_G0025573.1 mouse_genomes_project 2 73398214 73418236 - Atf2 protein_coding processed_transcript MGP_C3HHeJ_T0013699.1 MGP_C3HHeJ_G0011803.1 mouse_genomes_project 2 161955318 161955510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054752.1 MGP_C3HHeJ_G0025515.1 mouse_genomes_project 2 65370346 65444363 - MGP_C3HHeJ_P0054752 Ttc21b protein_coding protein_coding MGP_C3HHeJ_T0054753.1 MGP_C3HHeJ_G0025515.1 mouse_genomes_project 2 65403933 65423022 - Ttc21b protein_coding retained_intron MGP_C3HHeJ_T0054754.1 MGP_C3HHeJ_G0025515.1 mouse_genomes_project 2 65417012 65437246 - Ttc21b protein_coding retained_intron MGP_C3HHeJ_T0058298.1 MGP_C3HHeJ_G0026466.1 mouse_genomes_project 2 159249731 159251758 + MGP_C3HHeJ_P0058298 Gm15557 protein_coding protein_coding MGP_C3HHeJ_T0054074.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33308152 33325373 - MGP_C3HHeJ_P0054074 AI182371 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054075.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33309740 33325405 - MGP_C3HHeJ_P0054075 AI182371 protein_coding protein_coding MGP_C3HHeJ_T0054076.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33311735 33325404 - MGP_C3HHeJ_P0054076 AI182371 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054077.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33312076 33319666 - AI182371 protein_coding processed_transcript MGP_C3HHeJ_T0054078.1 MGP_C3HHeJ_G0025382.1 mouse_genomes_project 2 33314783 33326263 - AI182371 protein_coding processed_transcript MGP_C3HHeJ_T0057024.1 MGP_C3HHeJ_G0026146.1 mouse_genomes_project 2 127203293 127213789 + MGP_C3HHeJ_P0057024 Dut protein_coding protein_coding MGP_C3HHeJ_T0057025.1 MGP_C3HHeJ_G0026146.1 mouse_genomes_project 2 127203585 127214659 + MGP_C3HHeJ_P0057025 Dut protein_coding protein_coding MGP_C3HHeJ_T0057026.1 MGP_C3HHeJ_G0026146.1 mouse_genomes_project 2 127204003 127205130 + Dut protein_coding processed_transcript MGP_C3HHeJ_T0053590.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28811240 28860578 + MGP_C3HHeJ_P0053590 Prrx2 protein_coding protein_coding MGP_C3HHeJ_T0053591.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28822523 28860607 + MGP_C3HHeJ_P0053591 Prrx2 protein_coding protein_coding MGP_C3HHeJ_T0053592.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28822908 28858013 + Prrx2 protein_coding retained_intron MGP_C3HHeJ_T0053593.1 MGP_C3HHeJ_G0025310.1 mouse_genomes_project 2 28858674 28860476 + Prrx2 protein_coding retained_intron MGP_C3HHeJ_T0007219.1 MGP_C3HHeJ_G0005915.1 mouse_genomes_project 2 117426388 117445241 + G630016G05Rik lincRNA lincRNA MGP_C3HHeJ_T0007220.1 MGP_C3HHeJ_G0005915.1 mouse_genomes_project 2 117427049 117445240 + G630016G05Rik lincRNA lincRNA MGP_C3HHeJ_T0101925.1 MGP_C3HHeJ_G0039890.1 mouse_genomes_project 2 123144078 123194905 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099215.1 MGP_C3HHeJ_G0037409.1 mouse_genomes_project 2 131450260 131450411 - Gm25703 snRNA snRNA MGP_C3HHeJ_T0052392.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14766474 15157582 - MGP_C3HHeJ_P0052392 protein_coding protein_coding MGP_C3HHeJ_T0052393.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14766619 14885066 - MGP_C3HHeJ_P0052393 protein_coding protein_coding MGP_C3HHeJ_T0052394.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14771261 14782984 - protein_coding processed_transcript MGP_C3HHeJ_T0052395.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14771261 14884672 - MGP_C3HHeJ_P0052395 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052396.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14773322 14949504 - MGP_C3HHeJ_P0052396 protein_coding protein_coding MGP_C3HHeJ_T0052397.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14798061 14811984 - protein_coding processed_transcript MGP_C3HHeJ_T0052398.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14799679 14812027 - protein_coding processed_transcript MGP_C3HHeJ_T0052399.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14799936 14812053 - MGP_C3HHeJ_P0052399 protein_coding protein_coding MGP_C3HHeJ_T0052400.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14802656 14812014 - protein_coding processed_transcript MGP_C3HHeJ_T0052401.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14813947 14886921 - MGP_C3HHeJ_P0052401 protein_coding protein_coding MGP_C3HHeJ_T0052402.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14813950 14886923 - MGP_C3HHeJ_P0052402 protein_coding protein_coding MGP_C3HHeJ_T0052403.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14818252 14884755 - MGP_C3HHeJ_P0052403 protein_coding protein_coding MGP_C3HHeJ_T0052404.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 14855188 14946561 - protein_coding processed_transcript MGP_C3HHeJ_T0052405.1 MGP_C3HHeJ_G0025102.1 mouse_genomes_project 2 15153924 15158003 - protein_coding processed_transcript MGP_C3HHeJ_T0004030.1 MGP_C3HHeJ_G0003565.1 mouse_genomes_project 2 137691419 137951329 - 9630028H03Rik antisense antisense MGP_C3HHeJ_T0004031.1 MGP_C3HHeJ_G0003565.1 mouse_genomes_project 2 137948274 137951041 - 9630028H03Rik antisense antisense MGP_C3HHeJ_T0055695.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91371254 91381773 + MGP_C3HHeJ_P0055695 Rapsn protein_coding protein_coding MGP_C3HHeJ_T0055696.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91371261 91381770 + MGP_C3HHeJ_P0055696 Rapsn protein_coding protein_coding MGP_C3HHeJ_T0055697.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91371275 91381773 + MGP_C3HHeJ_P0055697 Rapsn protein_coding protein_coding MGP_C3HHeJ_T0055698.1 MGP_C3HHeJ_G0025859.1 mouse_genomes_project 2 91378763 91381524 + Rapsn protein_coding retained_intron MGP_C3HHeJ_T0059082.1 MGP_C3HHeJ_G0026632.1 mouse_genomes_project 2 171421608 171447849 + MGP_C3HHeJ_P0059082 Rnf114 protein_coding protein_coding MGP_C3HHeJ_T0059083.1 MGP_C3HHeJ_G0026632.1 mouse_genomes_project 2 171433435 171447856 + MGP_C3HHeJ_P0059083 Rnf114 protein_coding protein_coding MGP_C3HHeJ_T0059084.1 MGP_C3HHeJ_G0026632.1 mouse_genomes_project 2 171433792 171447847 + MGP_C3HHeJ_P0059084 Rnf114 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056386.1 MGP_C3HHeJ_G0026016.1 mouse_genomes_project 2 115013190 115026383 - MGP_C3HHeJ_P0056386 Grem1 protein_coding protein_coding MGP_C3HHeJ_T0056074.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103521352 103613937 - MGP_C3HHeJ_P0056074 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056075.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103521352 103613897 - MGP_C3HHeJ_P0056075 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056076.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103522741 103613767 - MGP_C3HHeJ_P0056076 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056077.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103522757 103613782 - MGP_C3HHeJ_P0056077 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056078.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524330 103613622 - MGP_C3HHeJ_P0056078 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056079.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524330 103613641 - MGP_C3HHeJ_P0056079 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056080.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524340 103613622 - MGP_C3HHeJ_P0056080 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056081.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103524343 103613618 - MGP_C3HHeJ_P0056081 Cd44 protein_coding protein_coding MGP_C3HHeJ_T0056082.1 MGP_C3HHeJ_G0025920.1 mouse_genomes_project 2 103562814 103613730 - Cd44 protein_coding retained_intron MGP_C3HHeJ_T0100475.1 MGP_C3HHeJ_G0038669.1 mouse_genomes_project 2 108790954 108791086 - Gm23439 snoRNA snoRNA MGP_C3HHeJ_T0013512.1 MGP_C3HHeJ_G0011616.1 mouse_genomes_project 2 88676095 88686317 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055610.1 MGP_C3HHeJ_G0025834.1 mouse_genomes_project 2 90044955 90050483 + MGP_C3HHeJ_P0055610 Olfr1255 protein_coding protein_coding MGP_C3HHeJ_T0011402.1 MGP_C3HHeJ_G0009535.1 mouse_genomes_project 2 43631619 43631696 + Gm27645 misc_RNA misc_RNA MGP_C3HHeJ_T0056868.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123000695 123017992 - MGP_C3HHeJ_P0056868 Strc protein_coding protein_coding MGP_C3HHeJ_T0056869.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123005448 123012066 - MGP_C3HHeJ_P0056869 Strc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056870.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123009925 123012050 - Strc protein_coding processed_transcript MGP_C3HHeJ_T0056871.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123010004 123011829 - Strc protein_coding retained_intron MGP_C3HHeJ_T0056872.1 MGP_C3HHeJ_G0026109.1 mouse_genomes_project 2 123013382 123024700 - Strc protein_coding retained_intron MGP_C3HHeJ_T0098116.1 MGP_C3HHeJ_G0036328.1 mouse_genomes_project 2 170526620 170526736 - Gm23152 rRNA rRNA MGP_C3HHeJ_T0010368.1 MGP_C3HHeJ_G0008501.1 mouse_genomes_project 2 124477477 124477556 + Mir147 miRNA miRNA MGP_C3HHeJ_T0003892.1 MGP_C3HHeJ_G0003472.1 mouse_genomes_project 2 36661880 36662840 - Gm27197 antisense antisense MGP_C3HHeJ_T0017555.1 MGP_C3HHeJ_G0015182.1 mouse_genomes_project 2 56018634 56071129 - BB557941 processed_transcript processed_transcript MGP_C3HHeJ_T0100461.1 MGP_C3HHeJ_G0038655.1 mouse_genomes_project 2 64509891 64510005 - Gm24138 snoRNA snoRNA MGP_C3HHeJ_T0052902.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23263239 23269552 - MGP_C3HHeJ_P0052902 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0052903.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23263253 23269581 - MGP_C3HHeJ_P0052903 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0052904.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23264796 23267721 - MGP_C3HHeJ_P0052904 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0052905.1 MGP_C3HHeJ_G0025191.1 mouse_genomes_project 2 23267634 23268087 - MGP_C3HHeJ_P0052905 Gm996 protein_coding protein_coding MGP_C3HHeJ_T0098399.1 MGP_C3HHeJ_G0036605.1 mouse_genomes_project 2 131632550 131656129 - Gm14040 sense_intronic sense_intronic MGP_C3HHeJ_T0056789.1 MGP_C3HHeJ_G0026100.1 mouse_genomes_project 2 122724336 122740352 - MGP_C3HHeJ_P0056789 Tgm7 protein_coding protein_coding MGP_C3HHeJ_T0053140.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24705331 24716104 - MGP_C3HHeJ_P0053140 Rexo4 protein_coding protein_coding MGP_C3HHeJ_T0053141.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24705334 24716104 - MGP_C3HHeJ_P0053141 Rexo4 protein_coding protein_coding MGP_C3HHeJ_T0053142.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706094 24708355 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053143.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706196 24707453 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053144.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706309 24715997 - MGP_C3HHeJ_P0053144 Rexo4 protein_coding protein_coding MGP_C3HHeJ_T0053145.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24706769 24708088 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053146.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24708101 24715996 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053147.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24709808 24711984 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0053148.1 MGP_C3HHeJ_G0025238.1 mouse_genomes_project 2 24714596 24716042 - Rexo4 protein_coding processed_transcript MGP_C3HHeJ_T0057790.1 MGP_C3HHeJ_G0026323.1 mouse_genomes_project 2 150176251 150182121 + MGP_C3HHeJ_P0057790 Pax1 protein_coding protein_coding MGP_C3HHeJ_T0057791.1 MGP_C3HHeJ_G0026323.1 mouse_genomes_project 2 150179236 150188625 + MGP_C3HHeJ_P0057791 Pax1 protein_coding protein_coding MGP_C3HHeJ_T0057792.1 MGP_C3HHeJ_G0026323.1 mouse_genomes_project 2 150182523 150207950 + Pax1 protein_coding retained_intron MGP_C3HHeJ_T0013380.1 MGP_C3HHeJ_G0011484.1 mouse_genomes_project 2 46742675 46743108 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052941.1 MGP_C3HHeJ_G0025204.1 mouse_genomes_project 2 23464681 23467944 + MGP_C3HHeJ_P0052941 Lcn11 protein_coding protein_coding MGP_C3HHeJ_T0013382.1 MGP_C3HHeJ_G0011486.1 mouse_genomes_project 2 47019504 47019818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058708.1 MGP_C3HHeJ_G0026538.1 mouse_genomes_project 2 167085854 167105374 - MGP_C3HHeJ_P0058708 Oser1 protein_coding protein_coding MGP_C3HHeJ_T0058709.1 MGP_C3HHeJ_G0026538.1 mouse_genomes_project 2 167103553 167105227 - Oser1 protein_coding processed_transcript MGP_C3HHeJ_T0053917.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30901006 30962571 - MGP_C3HHeJ_P0053917 Stxbp1 protein_coding protein_coding MGP_C3HHeJ_T0053918.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30901011 30931290 - Stxbp1 protein_coding processed_transcript MGP_C3HHeJ_T0053919.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30901365 30962528 - MGP_C3HHeJ_P0053919 Stxbp1 protein_coding protein_coding MGP_C3HHeJ_T0053920.1 MGP_C3HHeJ_G0025359.1 mouse_genomes_project 2 30930613 30931696 - Stxbp1 protein_coding retained_intron MGP_C3HHeJ_T0053561.1 MGP_C3HHeJ_G0025306.1 mouse_genomes_project 2 28557993 28573452 + MGP_C3HHeJ_P0053561 Cstad protein_coding protein_coding MGP_C3HHeJ_T0053562.1 MGP_C3HHeJ_G0025306.1 mouse_genomes_project 2 28568948 28572726 + Cstad protein_coding processed_transcript MGP_C3HHeJ_T0013687.1 MGP_C3HHeJ_G0011791.1 mouse_genomes_project 2 159643266 159643525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013340.1 MGP_C3HHeJ_G0011444.1 mouse_genomes_project 2 31457759 31458026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055191.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77540540 77592480 - MGP_C3HHeJ_P0055191 Cwc22 protein_coding protein_coding MGP_C3HHeJ_T0055192.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77550773 77552672 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055193.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77560931 77592504 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055194.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77571372 77592488 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055195.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77574616 77592243 - MGP_C3HHeJ_P0055195 Cwc22 protein_coding protein_coding MGP_C3HHeJ_T0055196.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77574702 77592494 - MGP_C3HHeJ_P0055196 Cwc22 protein_coding protein_coding MGP_C3HHeJ_T0055197.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77574758 77582498 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0055198.1 MGP_C3HHeJ_G0025606.1 mouse_genomes_project 2 77576104 77582556 - Cwc22 protein_coding processed_transcript MGP_C3HHeJ_T0054389.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587037 47904406 + MGP_C3HHeJ_P0054389 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054390.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587047 47756439 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054391.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587052 47966176 + MGP_C3HHeJ_P0054391 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054392.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587491 47658507 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054393.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587492 47591599 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054394.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587594 47756303 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054395.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587672 47886831 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054396.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47587678 47696018 + Mbd5 protein_coding processed_transcript MGP_C3HHeJ_T0054397.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47887242 47968908 + MGP_C3HHeJ_P0054397 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054398.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47887443 47916502 + MGP_C3HHeJ_P0054398 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054399.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47900408 47966202 + MGP_C3HHeJ_P0054399 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0054400.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47916606 47974623 + MGP_C3HHeJ_P0054400 Mbd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054401.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47923892 47965856 + MGP_C3HHeJ_P0054401 Mbd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054402.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47923893 47965867 + MGP_C3HHeJ_P0054402 Mbd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054403.1 MGP_C3HHeJ_G0025453.1 mouse_genomes_project 2 47924041 47966090 + MGP_C3HHeJ_P0054403 Mbd5 protein_coding protein_coding MGP_C3HHeJ_T0010366.1 MGP_C3HHeJ_G0008499.1 mouse_genomes_project 2 123095169 123095270 - Gm22953 miRNA miRNA MGP_C3HHeJ_T0004118.1 MGP_C3HHeJ_G0003632.1 mouse_genomes_project 2 184885656 184893530 + Gata5os antisense antisense MGP_C3HHeJ_T0055625.1 MGP_C3HHeJ_G0025842.1 mouse_genomes_project 2 90252709 90253643 + MGP_C3HHeJ_P0055625 Olfr1263 protein_coding protein_coding MGP_C3HHeJ_T0098103.1 MGP_C3HHeJ_G0036315.1 mouse_genomes_project 2 81314770 81314878 - Gm23900 rRNA rRNA MGP_C3HHeJ_T0054659.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058311 61338209 + MGP_C3HHeJ_P0054659 Slc4a10 protein_coding protein_coding MGP_C3HHeJ_T0054660.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058434 61336302 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0054661.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058434 61338209 + MGP_C3HHeJ_P0054661 Slc4a10 protein_coding protein_coding MGP_C3HHeJ_T0054662.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61058494 61338209 + MGP_C3HHeJ_P0054662 Slc4a10 protein_coding protein_coding MGP_C3HHeJ_T0054663.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61161219 61171617 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0054664.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61276993 61278729 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0054665.1 MGP_C3HHeJ_G0025500.1 mouse_genomes_project 2 61328106 61336856 + Slc4a10 protein_coding processed_transcript MGP_C3HHeJ_T0056409.1 MGP_C3HHeJ_G0026024.1 mouse_genomes_project 2 116929053 117131884 + MGP_C3HHeJ_P0056409 BC052040 protein_coding protein_coding MGP_C3HHeJ_T0056410.1 MGP_C3HHeJ_G0026024.1 mouse_genomes_project 2 116929070 117131884 + MGP_C3HHeJ_P0056410 BC052040 protein_coding protein_coding MGP_C3HHeJ_T0056411.1 MGP_C3HHeJ_G0026024.1 mouse_genomes_project 2 116929138 116992050 + BC052040 protein_coding processed_transcript MGP_C3HHeJ_T0057880.1 MGP_C3HHeJ_G0026356.1 mouse_genomes_project 2 153997421 154007577 - MGP_C3HHeJ_P0057880 protein_coding protein_coding MGP_C3HHeJ_T0013374.1 MGP_C3HHeJ_G0011478.1 mouse_genomes_project 2 40542011 40542244 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053045.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24135264 24138832 - MGP_C3HHeJ_P0053045 Inpp5e protein_coding protein_coding MGP_C3HHeJ_T0053046.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24135802 24148327 - Inpp5e protein_coding processed_transcript MGP_C3HHeJ_T0053047.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24136045 24148346 - Inpp5e protein_coding processed_transcript MGP_C3HHeJ_T0053048.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24136587 24147730 - MGP_C3HHeJ_P0053048 Inpp5e protein_coding protein_coding MGP_C3HHeJ_T0053049.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24138620 24139837 - Inpp5e protein_coding processed_transcript MGP_C3HHeJ_T0053050.1 MGP_C3HHeJ_G0025222.1 mouse_genomes_project 2 24138773 24141567 - MGP_C3HHeJ_P0053050 Inpp5e protein_coding protein_coding MGP_C3HHeJ_T0057637.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978508 145044148 + MGP_C3HHeJ_P0057637 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057638.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978555 143296437 + MGP_C3HHeJ_P0057638 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057639.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978555 145044148 + MGP_C3HHeJ_P0057639 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057640.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978629 143006547 + MGP_C3HHeJ_P0057640 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057641.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978632 143416360 + Macrod2 protein_coding retained_intron MGP_C3HHeJ_T0057642.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978634 143006550 + MGP_C3HHeJ_P0057642 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057643.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978634 145035606 + MGP_C3HHeJ_P0057643 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057644.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978641 143101871 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057645.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978655 143236020 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057646.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978659 143004091 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057647.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 142978794 143004091 + MGP_C3HHeJ_P0057647 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0057651.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 143622069 143744574 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057652.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 144176200 145044148 + Macrod2 protein_coding processed_transcript MGP_C3HHeJ_T0057653.1 MGP_C3HHeJ_G0026290.1 mouse_genomes_project 2 144829964 144887963 + MGP_C3HHeJ_P0057653 Macrod2 protein_coding protein_coding MGP_C3HHeJ_T0003834.1 MGP_C3HHeJ_G0003427.1 mouse_genomes_project 2 15482147 15489245 + Gm13330 antisense antisense MGP_C3HHeJ_T0010312.1 MGP_C3HHeJ_G0008445.1 mouse_genomes_project 2 30109556 30109619 + Mir7674 miRNA miRNA MGP_C3HHeJ_T0100434.1 MGP_C3HHeJ_G0038628.1 mouse_genomes_project 2 24385555 24385694 - Snhg7 snoRNA snoRNA MGP_C3HHeJ_T0055552.1 MGP_C3HHeJ_G0025788.1 mouse_genomes_project 2 88836171 88898593 - MGP_C3HHeJ_P0055552 protein_coding protein_coding MGP_C3HHeJ_T0056110.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440651 104484123 - MGP_C3HHeJ_P0056110 Nat10 protein_coding protein_coding MGP_C3HHeJ_T0056111.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440655 104484094 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056112.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440655 104484094 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056113.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104440655 104484050 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056114.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104441056 104443825 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056115.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104441322 104484057 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056116.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104451217 104453889 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056117.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104451412 104452655 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056118.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104453734 104461943 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056119.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104458145 104484123 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056120.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104468800 104483779 - MGP_C3HHeJ_P0056120 Nat10 protein_coding protein_coding MGP_C3HHeJ_T0056121.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104471599 104484114 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056122.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104477763 104484048 - Nat10 protein_coding retained_intron MGP_C3HHeJ_T0056123.1 MGP_C3HHeJ_G0025927.1 mouse_genomes_project 2 104477900 104480072 - MGP_C3HHeJ_P0056123 Nat10 protein_coding protein_coding MGP_C3HHeJ_T0013679.1 MGP_C3HHeJ_G0011783.1 mouse_genomes_project 2 158460224 158460853 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004043.1 MGP_C3HHeJ_G0003573.1 mouse_genomes_project 2 146940005 146941614 + 4930444E06Rik antisense antisense MGP_C3HHeJ_T0013509.1 MGP_C3HHeJ_G0011613.1 mouse_genomes_project 2 87731665 87732122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054136.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004422 34250055 - MGP_C3HHeJ_P0054136 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054137.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004433 34250421 - MGP_C3HHeJ_P0054137 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054138.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004433 34250421 - MGP_C3HHeJ_P0054138 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054139.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34004854 34250563 - MGP_C3HHeJ_P0054139 Ttll11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054140.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34041145 34144753 - Ttll11 protein_coding processed_transcript MGP_C3HHeJ_T0054141.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34152022 34209348 - Ttll11 protein_coding processed_transcript MGP_C3HHeJ_T0054142.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34165087 34250710 - Ttll11 protein_coding processed_transcript MGP_C3HHeJ_T0054143.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34165382 34214992 - MGP_C3HHeJ_P0054143 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054144.1 MGP_C3HHeJ_G0025391.1 mouse_genomes_project 2 34165402 34216574 - MGP_C3HHeJ_P0054144 Ttll11 protein_coding protein_coding MGP_C3HHeJ_T0054193.1 MGP_C3HHeJ_G0025420.1 mouse_genomes_project 2 35374856 35375825 - MGP_C3HHeJ_P0054193 Olfr361 protein_coding protein_coding MGP_C3HHeJ_T0059417.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569716 185584932 + MGP_C3HHeJ_P0059417 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059418.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569725 185585000 + MGP_C3HHeJ_P0059418 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059419.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569736 185584174 + MGP_C3HHeJ_P0059419 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059420.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569756 185584934 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059421.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569758 185584920 + Arfgap1 protein_coding processed_transcript MGP_C3HHeJ_T0059422.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569768 185584934 + MGP_C3HHeJ_P0059422 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059423.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569770 185575414 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059424.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185569791 185584785 + MGP_C3HHeJ_P0059424 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059425.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185573524 185583947 + MGP_C3HHeJ_P0059425 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059426.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185573539 185583844 + MGP_C3HHeJ_P0059426 Arfgap1 protein_coding protein_coding MGP_C3HHeJ_T0059427.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185575970 185579226 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059428.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185575987 185580516 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059429.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185576315 185579998 + Arfgap1 protein_coding retained_intron MGP_C3HHeJ_T0059430.1 MGP_C3HHeJ_G0026723.1 mouse_genomes_project 2 185582822 185583871 + Arfgap1 protein_coding processed_transcript MGP_C3HHeJ_T0013351.1 MGP_C3HHeJ_G0011455.1 mouse_genomes_project 2 35190048 35190544 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007240.1 MGP_C3HHeJ_G0005931.1 mouse_genomes_project 2 130293000 130308326 + Gm14009 lincRNA lincRNA MGP_C3HHeJ_T0057749.1 MGP_C3HHeJ_G0026315.1 mouse_genomes_project 2 148674016 148691305 - MGP_C3HHeJ_P0057749 Crnkl1 protein_coding protein_coding MGP_C3HHeJ_T0057750.1 MGP_C3HHeJ_G0026315.1 mouse_genomes_project 2 148686683 148687682 - Crnkl1 protein_coding retained_intron MGP_C3HHeJ_T0057751.1 MGP_C3HHeJ_G0026315.1 mouse_genomes_project 2 148688262 148691005 - Crnkl1 protein_coding retained_intron MGP_C3HHeJ_T0057690.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147086981 147091387 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057692.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147087070 147127312 + MGP_C3HHeJ_P0057692 Csrp2bp protein_coding protein_coding MGP_C3HHeJ_T0057693.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147091796 147111972 + MGP_C3HHeJ_P0057693 Csrp2bp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057694.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147093380 147107192 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057695.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147093845 147119343 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057696.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147106909 147112037 + Csrp2bp protein_coding retained_intron MGP_C3HHeJ_T0057697.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147106923 147112018 + Csrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0057698.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147120916 147127334 + Csrp2bp protein_coding retained_intron MGP_C3HHeJ_T0057699.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147121116 147122923 + MGP_C3HHeJ_P0057699 Csrp2bp protein_coding protein_coding MGP_C3HHeJ_T0057700.1 MGP_C3HHeJ_G0026303.1 mouse_genomes_project 2 147122647 147127335 + MGP_C3HHeJ_P0057700 Csrp2bp protein_coding protein_coding MGP_C3HHeJ_T0059161.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174207639 174230182 - MGP_C3HHeJ_P0059161 Zfp217 protein_coding protein_coding MGP_C3HHeJ_T0059162.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174207642 174241633 - MGP_C3HHeJ_P0059162 Zfp217 protein_coding protein_coding MGP_C3HHeJ_T0059163.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174219328 174230182 - Zfp217 protein_coding processed_transcript MGP_C3HHeJ_T0059164.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174219614 174232912 - Zfp217 protein_coding processed_transcript MGP_C3HHeJ_T0059165.1 MGP_C3HHeJ_G0026651.1 mouse_genomes_project 2 174219714 174247040 - Zfp217 protein_coding processed_transcript MGP_C3HHeJ_T0059378.1 MGP_C3HHeJ_G0026713.1 mouse_genomes_project 2 185161288 185167851 + MGP_C3HHeJ_P0059378 Ogfr protein_coding protein_coding MGP_C3HHeJ_T0059379.1 MGP_C3HHeJ_G0026713.1 mouse_genomes_project 2 185161505 185165890 + Ogfr protein_coding retained_intron MGP_C3HHeJ_T0010300.1 MGP_C3HHeJ_G0008433.1 mouse_genomes_project 2 24337168 24337241 + Mir126a miRNA miRNA MGP_C3HHeJ_T0013469.1 MGP_C3HHeJ_G0011573.1 mouse_genomes_project 2 78158236 78158875 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054125.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33804495 33981493 + MGP_C3HHeJ_P0054125 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054126.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33830443 33981491 + MGP_C3HHeJ_P0054126 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054127.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33869497 33981491 + MGP_C3HHeJ_P0054127 Dab2ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054128.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33869676 33981491 + MGP_C3HHeJ_P0054128 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054129.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33869676 33981495 + MGP_C3HHeJ_P0054129 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054130.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33910939 33959296 + Dab2ip protein_coding retained_intron MGP_C3HHeJ_T0054131.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33911098 33981493 + MGP_C3HHeJ_P0054131 Dab2ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054132.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33911176 33960382 + Dab2ip protein_coding processed_transcript MGP_C3HHeJ_T0054133.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33942446 33981491 + MGP_C3HHeJ_P0054133 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054134.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33942785 33979442 + MGP_C3HHeJ_P0054134 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0054135.1 MGP_C3HHeJ_G0025390.1 mouse_genomes_project 2 33960775 33981493 + MGP_C3HHeJ_P0054135 Dab2ip protein_coding protein_coding MGP_C3HHeJ_T0057250.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333469 131346355 + MGP_C3HHeJ_P0057250 Slc20a1 protein_coding protein_coding MGP_C3HHeJ_T0057251.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333506 131335922 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0057252.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333506 131339058 + MGP_C3HHeJ_P0057252 Slc20a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057253.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333508 131339849 + Slc20a1 protein_coding processed_transcript MGP_C3HHeJ_T0057254.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333508 131335920 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0057255.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131333849 131334559 + MGP_C3HHeJ_P0057255 Slc20a1 protein_coding protein_coding MGP_C3HHeJ_T0057256.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131334015 131346348 + MGP_C3HHeJ_P0057256 Slc20a1 protein_coding protein_coding MGP_C3HHeJ_T0057257.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131341058 131342997 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0057258.1 MGP_C3HHeJ_G0026204.1 mouse_genomes_project 2 131342098 131342765 + Slc20a1 protein_coding retained_intron MGP_C3HHeJ_T0007312.1 MGP_C3HHeJ_G0005992.1 mouse_genomes_project 2 171006554 171009587 - lincRNA lincRNA MGP_C3HHeJ_T0007313.1 MGP_C3HHeJ_G0005992.1 mouse_genomes_project 2 171007445 171008931 - lincRNA lincRNA MGP_C3HHeJ_T0058037.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156260961 156312740 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058038.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156260961 156318344 + MGP_C3HHeJ_P0058038 Tm9sf4 protein_coding protein_coding MGP_C3HHeJ_T0058039.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156261199 156295518 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058040.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156261206 156299989 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0058041.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156296852 156298641 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0058042.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156297379 156307924 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058043.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156300794 156311780 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058044.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156301983 156306078 + Tm9sf4 protein_coding processed_transcript MGP_C3HHeJ_T0058045.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156307410 156318344 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0058046.1 MGP_C3HHeJ_G0026406.1 mouse_genomes_project 2 156310012 156318344 + Tm9sf4 protein_coding retained_intron MGP_C3HHeJ_T0100477.1 MGP_C3HHeJ_G0038671.1 mouse_genomes_project 2 113034492 113034623 + Gm26421 snoRNA snoRNA MGP_C3HHeJ_T0055628.1 MGP_C3HHeJ_G0025845.1 mouse_genomes_project 2 90291994 90292903 - MGP_C3HHeJ_P0055628 Olfr140 protein_coding protein_coding MGP_C3HHeJ_T0055629.1 MGP_C3HHeJ_G0025845.1 mouse_genomes_project 2 90291994 90305426 - MGP_C3HHeJ_P0055629 Olfr140 protein_coding protein_coding MGP_C3HHeJ_T0007302.1 MGP_C3HHeJ_G0005983.1 mouse_genomes_project 2 169405815 169406140 - Gm28163 lincRNA lincRNA MGP_C3HHeJ_T0056882.1 MGP_C3HHeJ_G0026112.1 mouse_genomes_project 2 123082869 123088736 - MGP_C3HHeJ_P0056882 Ell3 protein_coding protein_coding MGP_C3HHeJ_T0056883.1 MGP_C3HHeJ_G0026112.1 mouse_genomes_project 2 123082886 123086462 - MGP_C3HHeJ_P0056883 Ell3 protein_coding protein_coding MGP_C3HHeJ_T0056885.1 MGP_C3HHeJ_G0026112.1 mouse_genomes_project 2 123083839 123085012 - Ell3 protein_coding retained_intron MGP_C3HHeJ_T0054928.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600590 70653317 + MGP_C3HHeJ_P0054928 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054929.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600625 70653313 + MGP_C3HHeJ_P0054929 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054930.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600625 70653322 + MGP_C3HHeJ_P0054930 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054931.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600642 70653310 + MGP_C3HHeJ_P0054931 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054932.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600690 70637325 + Dync1i2 protein_coding processed_transcript MGP_C3HHeJ_T0054933.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600718 70653322 + MGP_C3HHeJ_P0054933 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054934.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600856 70653316 + MGP_C3HHeJ_P0054934 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054935.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600868 70652878 + MGP_C3HHeJ_P0054935 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054936.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600876 70653322 + MGP_C3HHeJ_P0054936 Dync1i2 protein_coding protein_coding MGP_C3HHeJ_T0054937.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70600888 70620917 + Dync1i2 protein_coding retained_intron MGP_C3HHeJ_T0054938.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70625036 70650362 + Dync1i2 protein_coding retained_intron MGP_C3HHeJ_T0054939.1 MGP_C3HHeJ_G0025552.1 mouse_genomes_project 2 70650563 70653077 + Dync1i2 protein_coding retained_intron MGP_C3HHeJ_T0007329.1 MGP_C3HHeJ_G0006005.1 mouse_genomes_project 2 173299053 173301807 + 9430093N23Rik lincRNA lincRNA MGP_C3HHeJ_T0007158.1 MGP_C3HHeJ_G0005865.1 mouse_genomes_project 2 74713216 74743721 - A330043C09Rik lincRNA lincRNA MGP_C3HHeJ_T0004003.1 MGP_C3HHeJ_G0003548.1 mouse_genomes_project 2 128701774 128709727 + Gm27003 antisense antisense MGP_C3HHeJ_T0058520.1 MGP_C3HHeJ_G0026497.1 mouse_genomes_project 2 160737507 160755331 - Ghrh protein_coding processed_transcript MGP_C3HHeJ_T0058521.1 MGP_C3HHeJ_G0026497.1 mouse_genomes_project 2 160737507 160754470 - MGP_C3HHeJ_P0058521 Ghrh protein_coding protein_coding MGP_C3HHeJ_T0058522.1 MGP_C3HHeJ_G0026497.1 mouse_genomes_project 2 160737507 160745387 - MGP_C3HHeJ_P0058522 Ghrh protein_coding protein_coding MGP_C3HHeJ_T0057849.1 MGP_C3HHeJ_G0026349.1 mouse_genomes_project 2 153647280 153655939 - MGP_C3HHeJ_P0057849 Vsx1 protein_coding protein_coding MGP_C3HHeJ_T0099197.1 MGP_C3HHeJ_G0037391.1 mouse_genomes_project 2 74146991 74147098 + Gm22975 snRNA snRNA MGP_C3HHeJ_T0052924.1 MGP_C3HHeJ_G0025195.1 mouse_genomes_project 2 23314364 23317729 - MGP_C3HHeJ_P0052924 Fcna protein_coding protein_coding MGP_C3HHeJ_T0052925.1 MGP_C3HHeJ_G0025195.1 mouse_genomes_project 2 23314663 23316987 - Fcna protein_coding processed_transcript MGP_C3HHeJ_T0013332.1 MGP_C3HHeJ_G0011436.1 mouse_genomes_project 2 26642332 26642456 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003905.1 MGP_C3HHeJ_G0003482.1 mouse_genomes_project 2 59298272 59332060 + Gm13571 antisense antisense MGP_C3HHeJ_T0003906.1 MGP_C3HHeJ_G0003482.1 mouse_genomes_project 2 59316182 59324709 + Gm13571 antisense antisense MGP_C3HHeJ_T0010392.1 MGP_C3HHeJ_G0008525.1 mouse_genomes_project 2 166722762 166722828 + Mir7003 miRNA miRNA MGP_C3HHeJ_T0054534.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57519090 57595108 + Upp2 protein_coding processed_transcript MGP_C3HHeJ_T0054535.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57519110 57540081 + Upp2 protein_coding processed_transcript MGP_C3HHeJ_T0054536.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57519179 57748155 + MGP_C3HHeJ_P0054536 Upp2 protein_coding protein_coding MGP_C3HHeJ_T0054537.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57708861 57746426 + MGP_C3HHeJ_P0054537 Upp2 protein_coding protein_coding MGP_C3HHeJ_T0054538.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57709099 57745852 + MGP_C3HHeJ_P0054538 Upp2 protein_coding protein_coding MGP_C3HHeJ_T0054539.1 MGP_C3HHeJ_G0025483.1 mouse_genomes_project 2 57720524 57745486 + Upp2 protein_coding processed_transcript MGP_C3HHeJ_T0013427.1 MGP_C3HHeJ_G0011531.1 mouse_genomes_project 2 60222559 60222850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058271.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159122395 159132380 - MGP_C3HHeJ_P0058271 Eif6 protein_coding protein_coding MGP_C3HHeJ_T0058272.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159122400 159125038 - Eif6 protein_coding processed_transcript MGP_C3HHeJ_T0058273.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159122596 159131891 - MGP_C3HHeJ_P0058273 Eif6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058274.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159125394 159131891 - Eif6 protein_coding retained_intron MGP_C3HHeJ_T0058275.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159125394 159131891 - MGP_C3HHeJ_P0058275 Eif6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058276.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159126336 159132221 - MGP_C3HHeJ_P0058276 Eif6 protein_coding protein_coding MGP_C3HHeJ_T0058277.1 MGP_C3HHeJ_G0026463.1 mouse_genomes_project 2 159130614 159132118 - MGP_C3HHeJ_P0058277 Eif6 protein_coding protein_coding MGP_C3HHeJ_T0056053.1 MGP_C3HHeJ_G0025915.1 mouse_genomes_project 2 102637143 102877255 - MGP_C3HHeJ_P0056053 Ldlrad3 protein_coding protein_coding MGP_C3HHeJ_T0056054.1 MGP_C3HHeJ_G0025915.1 mouse_genomes_project 2 102637143 102877228 - MGP_C3HHeJ_P0056054 Ldlrad3 protein_coding protein_coding MGP_C3HHeJ_T0056055.1 MGP_C3HHeJ_G0025915.1 mouse_genomes_project 2 102802176 102828598 - Ldlrad3 protein_coding processed_transcript MGP_C3HHeJ_T0098115.1 MGP_C3HHeJ_G0036327.1 mouse_genomes_project 2 170038206 170038311 + Gm22687 rRNA rRNA MGP_C3HHeJ_T0013291.1 MGP_C3HHeJ_G0011395.1 mouse_genomes_project 2 12786335 12787305 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055106.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75408571 75517402 + MGP_C3HHeJ_P0055106 Agps protein_coding protein_coding MGP_C3HHeJ_T0055107.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75408583 75480491 + MGP_C3HHeJ_P0055107 Agps protein_coding protein_coding MGP_C3HHeJ_T0055108.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75408899 75512130 + MGP_C3HHeJ_P0055108 Agps protein_coding protein_coding MGP_C3HHeJ_T0055109.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75452325 75462857 + MGP_C3HHeJ_P0055109 Agps protein_coding protein_coding MGP_C3HHeJ_T0055110.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75457876 75477074 + Agps protein_coding processed_transcript MGP_C3HHeJ_T0055111.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75479391 75512200 + MGP_C3HHeJ_P0055111 Agps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055112.1 MGP_C3HHeJ_G0025590.1 mouse_genomes_project 2 75494446 75496945 + Agps protein_coding retained_intron MGP_C3HHeJ_T0057977.1 MGP_C3HHeJ_G0026391.1 mouse_genomes_project 2 155707923 155716187 + MGP_C3HHeJ_P0057977 Rem1 protein_coding protein_coding MGP_C3HHeJ_T0057978.1 MGP_C3HHeJ_G0026391.1 mouse_genomes_project 2 155707925 155709289 + MGP_C3HHeJ_P0057978 Rem1 protein_coding protein_coding MGP_C3HHeJ_T0057979.1 MGP_C3HHeJ_G0026391.1 mouse_genomes_project 2 155713948 155716191 + Rem1 protein_coding retained_intron MGP_C3HHeJ_T0055505.1 MGP_C3HHeJ_G0025745.1 mouse_genomes_project 2 87736388 87737451 - MGP_C3HHeJ_P0055505 Olfr1133 protein_coding protein_coding MGP_C3HHeJ_T0057343.1 MGP_C3HHeJ_G0026226.1 mouse_genomes_project 2 132743330 132744973 + Mrps26 protein_coding retained_intron MGP_C3HHeJ_T0057344.1 MGP_C3HHeJ_G0026226.1 mouse_genomes_project 2 132743330 132748058 + MGP_C3HHeJ_P0057344 Mrps26 protein_coding protein_coding MGP_C3HHeJ_T0100481.1 MGP_C3HHeJ_G0038675.1 mouse_genomes_project 2 130893792 130893918 + Gm23172 snoRNA snoRNA MGP_C3HHeJ_T0052900.1 MGP_C3HHeJ_G0025190.1 mouse_genomes_project 2 23260204 23261999 - MGP_C3HHeJ_P0052900 Phpt1 protein_coding protein_coding MGP_C3HHeJ_T0052901.1 MGP_C3HHeJ_G0025190.1 mouse_genomes_project 2 23260276 23261653 - Phpt1 protein_coding processed_transcript MGP_C3HHeJ_T0013384.1 MGP_C3HHeJ_G0011488.1 mouse_genomes_project 2 47823540 47823969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011414.1 MGP_C3HHeJ_G0009547.1 mouse_genomes_project 2 115541949 115542267 + Gm25103 misc_RNA misc_RNA MGP_C3HHeJ_T0017707.1 MGP_C3HHeJ_G0015261.1 mouse_genomes_project 2 185350122 185360290 - Gm14343 processed_transcript processed_transcript MGP_C3HHeJ_T0057870.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153897031 153975080 - MGP_C3HHeJ_P0057870 Ninl protein_coding protein_coding MGP_C3HHeJ_T0057871.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153899552 153903578 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057872.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153900066 153915461 - MGP_C3HHeJ_P0057872 Ninl protein_coding protein_coding MGP_C3HHeJ_T0057873.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153915159 153916593 - Ninl protein_coding retained_intron MGP_C3HHeJ_T0057874.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153921227 153934560 - MGP_C3HHeJ_P0057874 Ninl protein_coding protein_coding MGP_C3HHeJ_T0057875.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153926849 153934694 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057876.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153926941 153975014 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057877.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153929662 153975058 - Ninl protein_coding processed_transcript MGP_C3HHeJ_T0057878.1 MGP_C3HHeJ_G0026354.1 mouse_genomes_project 2 153937602 154007606 - MGP_C3HHeJ_P0057878 Ninl protein_coding protein_coding MGP_C3HHeJ_T0004037.1 MGP_C3HHeJ_G0003570.1 mouse_genomes_project 2 146225008 146239585 - Pcsk2os1 antisense antisense MGP_C3HHeJ_T0004038.1 MGP_C3HHeJ_G0003570.1 mouse_genomes_project 2 146227500 146235452 - Pcsk2os1 antisense antisense MGP_C3HHeJ_T0004106.1 MGP_C3HHeJ_G0003626.1 mouse_genomes_project 2 177290830 177299724 - Gm14453 antisense antisense MGP_C3HHeJ_T0017526.1 MGP_C3HHeJ_G0015165.1 mouse_genomes_project 2 24185823 24199559 + 0610009E02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017527.1 MGP_C3HHeJ_G0015165.1 mouse_genomes_project 2 24186051 24198175 + 0610009E02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017528.1 MGP_C3HHeJ_G0015165.1 mouse_genomes_project 2 24186069 24199570 + 0610009E02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013623.1 MGP_C3HHeJ_G0011727.1 mouse_genomes_project 2 135333975 135334341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004027.1 MGP_C3HHeJ_G0003562.1 mouse_genomes_project 2 134969598 134975993 - Gm14097 antisense antisense MGP_C3HHeJ_T0055488.1 MGP_C3HHeJ_G0025736.1 mouse_genomes_project 2 87512687 87515895 + MGP_C3HHeJ_P0055488 Olfr1126 protein_coding protein_coding MGP_C3HHeJ_T0017646.1 MGP_C3HHeJ_G0015229.1 mouse_genomes_project 2 131133090 131137960 + Gm14027 processed_transcript processed_transcript MGP_C3HHeJ_T0055441.1 MGP_C3HHeJ_G0025691.1 mouse_genomes_project 2 86104328 86105152 - MGP_C3HHeJ_P0055441 Olfr1049 protein_coding protein_coding MGP_C3HHeJ_T0011397.1 MGP_C3HHeJ_G0009530.1 mouse_genomes_project 2 31977358 31977728 + Nron misc_RNA misc_RNA MGP_C3HHeJ_T0053356.1 MGP_C3HHeJ_G0025279.1 mouse_genomes_project 2 27704154 27719755 + MGP_C3HHeJ_P0053356 Slc27a4 protein_coding protein_coding MGP_C3HHeJ_T0053357.1 MGP_C3HHeJ_G0025279.1 mouse_genomes_project 2 27708518 27713136 + Slc27a4 protein_coding processed_transcript MGP_C3HHeJ_T0013711.1 MGP_C3HHeJ_G0011815.1 mouse_genomes_project 2 169473149 169473510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007320.1 MGP_C3HHeJ_G0005997.1 mouse_genomes_project 2 171818051 171822009 + Gm14319 lincRNA lincRNA MGP_C3HHeJ_T0013507.1 MGP_C3HHeJ_G0011611.1 mouse_genomes_project 2 87636160 87637010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013535.1 MGP_C3HHeJ_G0011639.1 mouse_genomes_project 2 100138039 100138667 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007113.1 MGP_C3HHeJ_G0005827.1 mouse_genomes_project 2 46670721 47094158 - lincRNA lincRNA MGP_C3HHeJ_T0001062.1 MGP_C3HHeJ_G0000999.1 mouse_genomes_project 2 129348998 129349648 - TEC TEC MGP_C3HHeJ_T0001063.1 MGP_C3HHeJ_G0000999.1 mouse_genomes_project 2 129349302 129349626 - TEC TEC MGP_C3HHeJ_T0001065.1 MGP_C3HHeJ_G0001001.1 mouse_genomes_project 2 131331957 131333900 - TEC TEC MGP_C3HHeJ_T0007050.1 MGP_C3HHeJ_G0005780.1 mouse_genomes_project 2 6333438 6342497 + 1700061F12Rik lincRNA lincRNA MGP_C3HHeJ_T0057089.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128798121 128808076 - Usp50 protein_coding processed_transcript MGP_C3HHeJ_T0057090.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128798496 128821577 - MGP_C3HHeJ_P0057090 Usp50 protein_coding protein_coding MGP_C3HHeJ_T0057091.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128813927 128821570 - MGP_C3HHeJ_P0057091 Usp50 protein_coding protein_coding MGP_C3HHeJ_T0057092.1 MGP_C3HHeJ_G0026163.1 mouse_genomes_project 2 128815856 128821591 - Usp50 protein_coding retained_intron MGP_C3HHeJ_T0100487.1 MGP_C3HHeJ_G0038681.1 mouse_genomes_project 2 132451479 132451549 + Gm23650 snoRNA snoRNA MGP_C3HHeJ_T0004032.1 MGP_C3HHeJ_G0003566.1 mouse_genomes_project 2 138526527 138529667 + Gm14218 antisense antisense MGP_C3HHeJ_T0001070.1 MGP_C3HHeJ_G0001006.1 mouse_genomes_project 2 173703557 173707820 - TEC TEC MGP_C3HHeJ_T0013479.1 MGP_C3HHeJ_G0011583.1 mouse_genomes_project 2 80340406 80341014 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007276.1 MGP_C3HHeJ_G0005960.1 mouse_genomes_project 2 154787379 154789780 - 4930556L07Rik lincRNA lincRNA MGP_C3HHeJ_T0100456.1 MGP_C3HHeJ_G0038650.1 mouse_genomes_project 2 53442171 53442310 - Gm24549 snoRNA snoRNA MGP_C3HHeJ_T0097892.1 MGP_C3HHeJ_G0036104.1 mouse_genomes_project 2 20406267 20406683 - pseudogene pseudogene MGP_C3HHeJ_T0055513.1 MGP_C3HHeJ_G0025752.1 mouse_genomes_project 2 87846412 87847348 + MGP_C3HHeJ_P0055513 Olfr1140 protein_coding protein_coding MGP_C3HHeJ_T0101887.1 MGP_C3HHeJ_G0039852.1 mouse_genomes_project 2 84898617 84901159 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013606.1 MGP_C3HHeJ_G0011710.1 mouse_genomes_project 2 131899069 131900054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007207.1 MGP_C3HHeJ_G0005905.1 mouse_genomes_project 2 109967896 109970671 + Gm13923 lincRNA lincRNA MGP_C3HHeJ_T0001034.1 MGP_C3HHeJ_G0000971.1 mouse_genomes_project 2 34016420 34019435 - TEC TEC MGP_C3HHeJ_T0017609.1 MGP_C3HHeJ_G0015216.1 mouse_genomes_project 2 114663435 114673319 + Gm13965 processed_transcript processed_transcript MGP_C3HHeJ_T0007045.1 MGP_C3HHeJ_G0005776.1 mouse_genomes_project 2 3516149 3522691 + Gm13391 lincRNA lincRNA MGP_C3HHeJ_T0007046.1 MGP_C3HHeJ_G0005776.1 mouse_genomes_project 2 3516420 3517261 + Gm13391 lincRNA lincRNA MGP_C3HHeJ_T0055582.1 MGP_C3HHeJ_G0025815.1 mouse_genomes_project 2 89432124 89433143 - MGP_C3HHeJ_P0055582 Olfr1229 protein_coding protein_coding MGP_C3HHeJ_T0055583.1 MGP_C3HHeJ_G0025815.1 mouse_genomes_project 2 89432181 89438028 - MGP_C3HHeJ_P0055583 Olfr1229 protein_coding protein_coding MGP_C3HHeJ_T0100479.1 MGP_C3HHeJ_G0038673.1 mouse_genomes_project 2 122632432 122632646 + Gm22865 snoRNA snoRNA MGP_C3HHeJ_T0099220.1 MGP_C3HHeJ_G0037414.1 mouse_genomes_project 2 138410321 138410422 - Gm26227 snRNA snRNA MGP_C3HHeJ_T0011431.1 MGP_C3HHeJ_G0009564.1 mouse_genomes_project 2 178623597 178623722 + Gm27849 misc_RNA misc_RNA MGP_C3HHeJ_T0057561.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137138933 137842547 + MGP_C3HHeJ_P0057561 Plcb1 protein_coding protein_coding MGP_C3HHeJ_T0057562.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139025 137842558 + MGP_C3HHeJ_P0057562 Plcb1 protein_coding protein_coding MGP_C3HHeJ_T0057563.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139041 137348599 + Plcb1 protein_coding retained_intron MGP_C3HHeJ_T0057564.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139095 137621568 + Plcb1 protein_coding retained_intron MGP_C3HHeJ_T0057565.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137139396 137766915 + MGP_C3HHeJ_P0057565 Plcb1 protein_coding protein_coding MGP_C3HHeJ_T0057566.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137587992 137629168 + Plcb1 protein_coding processed_transcript MGP_C3HHeJ_T0057567.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137588039 137629173 + MGP_C3HHeJ_P0057567 Plcb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057568.1 MGP_C3HHeJ_G0026273.1 mouse_genomes_project 2 137615350 137622457 + Plcb1 protein_coding processed_transcript MGP_C3HHeJ_T0056035.1 MGP_C3HHeJ_G0025911.1 mouse_genomes_project 2 102305885 102317104 - MGP_C3HHeJ_P0056035 Rag1 protein_coding protein_coding MGP_C3HHeJ_T0053168.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24833711 24863955 + MGP_C3HHeJ_P0053168 Adamtsl2 protein_coding protein_coding MGP_C3HHeJ_T0053169.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24852269 24863949 + Adamtsl2 protein_coding retained_intron MGP_C3HHeJ_T0053170.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24853016 24853632 + Adamtsl2 protein_coding processed_transcript MGP_C3HHeJ_T0053171.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24858759 24862380 + Adamtsl2 protein_coding retained_intron MGP_C3HHeJ_T0053172.1 MGP_C3HHeJ_G0025243.1 mouse_genomes_project 2 24859636 24863955 + Adamtsl2 protein_coding retained_intron MGP_C3HHeJ_T0053421.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27983682 28000279 + MGP_C3HHeJ_P0053421 Set protein_coding protein_coding MGP_C3HHeJ_T0053422.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27989516 27999533 + MGP_C3HHeJ_P0053422 Set protein_coding protein_coding MGP_C3HHeJ_T0053423.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27990363 28001081 + Set protein_coding processed_transcript MGP_C3HHeJ_T0053424.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27996431 28001414 + MGP_C3HHeJ_P0053424 Set protein_coding protein_coding MGP_C3HHeJ_T0053425.1 MGP_C3HHeJ_G0025286.1 mouse_genomes_project 2 27997168 27999606 + Set protein_coding processed_transcript MGP_C3HHeJ_T0013612.1 MGP_C3HHeJ_G0011716.1 mouse_genomes_project 2 133196438 133196907 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055627.1 MGP_C3HHeJ_G0025844.1 mouse_genomes_project 2 90258891 90259818 - MGP_C3HHeJ_P0055627 Olfr1264 protein_coding protein_coding MGP_C3HHeJ_T0056170.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105182551 105253307 - MGP_C3HHeJ_P0056170 Hipk3 protein_coding protein_coding MGP_C3HHeJ_T0056171.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105185854 105252551 - MGP_C3HHeJ_P0056171 Hipk3 protein_coding protein_coding MGP_C3HHeJ_T0056172.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105185928 105252815 - MGP_C3HHeJ_P0056172 Hipk3 protein_coding protein_coding MGP_C3HHeJ_T0056173.1 MGP_C3HHeJ_G0025938.1 mouse_genomes_project 2 105189732 105195132 - Hipk3 protein_coding processed_transcript MGP_C3HHeJ_T0058510.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681018 160691968 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058511.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681060 160734324 + MGP_C3HHeJ_P0058511 Rpn2 protein_coding protein_coding MGP_C3HHeJ_T0058512.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681147 160734324 + MGP_C3HHeJ_P0058512 Rpn2 protein_coding protein_coding MGP_C3HHeJ_T0058513.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681427 160734061 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058514.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160681570 160693118 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058515.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160685989 160733740 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058516.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160697248 160697760 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058517.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160718015 160719673 + Rpn2 protein_coding processed_transcript MGP_C3HHeJ_T0058518.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160719641 160730478 + Rpn2 protein_coding retained_intron MGP_C3HHeJ_T0058519.1 MGP_C3HHeJ_G0026496.1 mouse_genomes_project 2 160727814 160730167 + Rpn2 protein_coding retained_intron MGP_C3HHeJ_T0099211.1 MGP_C3HHeJ_G0037405.1 mouse_genomes_project 2 124112425 124112577 - Gm24409 snRNA snRNA MGP_C3HHeJ_T0059358.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184807612 184824388 - MGP_C3HHeJ_P0059358 Cables2 protein_coding protein_coding MGP_C3HHeJ_T0059359.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184807778 184824355 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0059360.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184809984 184811349 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0059361.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184811715 184824388 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0059362.1 MGP_C3HHeJ_G0026707.1 mouse_genomes_project 2 184812438 184824338 - Cables2 protein_coding retained_intron MGP_C3HHeJ_T0010403.1 MGP_C3HHeJ_G0008536.1 mouse_genomes_project 2 178575767 178575835 + Gm27591 miRNA miRNA MGP_C3HHeJ_T0013668.1 MGP_C3HHeJ_G0011772.1 mouse_genomes_project 2 153908995 153909478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010364.1 MGP_C3HHeJ_G0008497.1 mouse_genomes_project 2 121589863 121589926 + Mir7665 miRNA miRNA MGP_C3HHeJ_T0056441.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118687945 118754051 - MGP_C3HHeJ_P0056441 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056442.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118687946 118753927 - MGP_C3HHeJ_P0056442 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056443.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056443 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056444.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056444 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056445.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056445 Rasgrp1 protein_coding protein_coding MGP_C3HHeJ_T0056446.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118690496 118753759 - MGP_C3HHeJ_P0056446 Rasgrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056447.1 MGP_C3HHeJ_G0026030.1 mouse_genomes_project 2 118708089 118753975 - Rasgrp1 protein_coding retained_intron MGP_C3HHeJ_T0013503.1 MGP_C3HHeJ_G0011607.1 mouse_genomes_project 2 87385751 87386624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101900.1 MGP_C3HHeJ_G0039865.1 mouse_genomes_project 2 86421454 86422991 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013690.1 MGP_C3HHeJ_G0011794.1 mouse_genomes_project 2 159958885 159959525 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055007.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72587187 72716394 - MGP_C3HHeJ_P0055007 Ola1 protein_coding protein_coding MGP_C3HHeJ_T0055008.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72587586 72716373 - Ola1 protein_coding processed_transcript MGP_C3HHeJ_T0055009.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72587588 72714907 - MGP_C3HHeJ_P0055009 Ola1 protein_coding protein_coding MGP_C3HHeJ_T0055010.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72635875 72716280 - MGP_C3HHeJ_P0055010 Ola1 protein_coding protein_coding MGP_C3HHeJ_T0055011.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72699972 72716359 - Ola1 protein_coding processed_transcript MGP_C3HHeJ_T0055012.1 MGP_C3HHeJ_G0025565.1 mouse_genomes_project 2 72714817 72720871 - Ola1 protein_coding processed_transcript MGP_C3HHeJ_T0013718.1 MGP_C3HHeJ_G0011822.1 mouse_genomes_project 2 171202125 171202484 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013682.1 MGP_C3HHeJ_G0011786.1 mouse_genomes_project 2 158764367 158764693 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013285.1 MGP_C3HHeJ_G0011389.1 mouse_genomes_project 2 12055983 12056700 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010252.1 MGP_C3HHeJ_G0008385.1 mouse_genomes_project 2 7690211 7690305 + Mir466f-1 miRNA miRNA MGP_C3HHeJ_T0056582.1 MGP_C3HHeJ_G0026066.1 mouse_genomes_project 2 121152831 121161649 - Oip5 protein_coding retained_intron MGP_C3HHeJ_T0056583.1 MGP_C3HHeJ_G0026066.1 mouse_genomes_project 2 121153276 121161649 - MGP_C3HHeJ_P0056583 Oip5 protein_coding protein_coding MGP_C3HHeJ_T0053278.1 MGP_C3HHeJ_G0025265.1 mouse_genomes_project 2 26528190 26647602 + MGP_C3HHeJ_P0053278 Ak8 protein_coding protein_coding MGP_C3HHeJ_T0053279.1 MGP_C3HHeJ_G0025265.1 mouse_genomes_project 2 26528233 26564183 + Ak8 protein_coding processed_transcript MGP_C3HHeJ_T0053280.1 MGP_C3HHeJ_G0025265.1 mouse_genomes_project 2 26572994 26590896 + Ak8 protein_coding processed_transcript MGP_C3HHeJ_T0052022.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 458712 489849 - MGP_C3HHeJ_P0052022 protein_coding protein_coding MGP_C3HHeJ_T0052023.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 458838 460025 - protein_coding retained_intron MGP_C3HHeJ_T0052024.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 460820 461916 - protein_coding retained_intron MGP_C3HHeJ_T0052025.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 466078 470690 - protein_coding retained_intron MGP_C3HHeJ_T0052026.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 473086 480046 - protein_coding retained_intron MGP_C3HHeJ_T0052027.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 481561 489792 - MGP_C3HHeJ_P0052027 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052028.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 483443 489825 - MGP_C3HHeJ_P0052028 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052029.1 MGP_C3HHeJ_G0025042.1 mouse_genomes_project 2 487922 489778 - protein_coding retained_intron MGP_C3HHeJ_T0007149.1 MGP_C3HHeJ_G0005858.1 mouse_genomes_project 2 73672129 73687878 + Gm13667 lincRNA lincRNA MGP_C3HHeJ_T0013656.1 MGP_C3HHeJ_G0011760.1 mouse_genomes_project 2 150097691 150098667 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052738.1 MGP_C3HHeJ_G0025163.1 mouse_genomes_project 2 22888325 22889496 - MGP_C3HHeJ_P0052738 Cysrt1 protein_coding protein_coding MGP_C3HHeJ_T0052739.1 MGP_C3HHeJ_G0025163.1 mouse_genomes_project 2 22888496 22889405 - MGP_C3HHeJ_P0052739 Cysrt1 protein_coding protein_coding MGP_C3HHeJ_T0052740.1 MGP_C3HHeJ_G0025163.1 mouse_genomes_project 2 22888664 22891960 - MGP_C3HHeJ_P0052740 Cysrt1 protein_coding protein_coding MGP_C3HHeJ_T0056642.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121605686 121614221 + protein_coding retained_intron MGP_C3HHeJ_T0056643.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121605702 121616415 + protein_coding retained_intron MGP_C3HHeJ_T0056644.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121605702 121614220 + MGP_C3HHeJ_P0056644 protein_coding protein_coding MGP_C3HHeJ_T0056645.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121606812 121608387 + protein_coding retained_intron MGP_C3HHeJ_T0056646.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121611124 121612704 + protein_coding retained_intron MGP_C3HHeJ_T0056647.1 MGP_C3HHeJ_G0026078.1 mouse_genomes_project 2 121613225 121613946 + protein_coding retained_intron MGP_C3HHeJ_T0052040.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 993790 1153142 + Frmd4a protein_coding processed_transcript MGP_C3HHeJ_T0052041.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 993807 997978 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052042.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 993817 1611740 + MGP_C3HHeJ_P0052042 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052043.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1139092 1157561 + Frmd4a protein_coding processed_transcript MGP_C3HHeJ_T0052044.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1139101 1611641 + MGP_C3HHeJ_P0052044 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052045.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1285363 1570193 + MGP_C3HHeJ_P0052045 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052046.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1285730 1536627 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052047.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1285848 1557977 + MGP_C3HHeJ_P0052047 Frmd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052048.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1316243 1592359 + MGP_C3HHeJ_P0052048 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052049.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1381610 1527528 + MGP_C3HHeJ_P0052049 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052050.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1381612 1424090 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052051.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1392918 1611742 + MGP_C3HHeJ_P0052051 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052052.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1393380 1421942 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052053.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1393414 1535465 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052054.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1413470 1611744 + MGP_C3HHeJ_P0052054 Frmd4a protein_coding protein_coding MGP_C3HHeJ_T0052055.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1469556 1494498 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052056.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1557470 1595702 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052057.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1557491 1585932 + Frmd4a protein_coding retained_intron MGP_C3HHeJ_T0052058.1 MGP_C3HHeJ_G0025046.1 mouse_genomes_project 2 1563903 1592395 + MGP_C3HHeJ_P0052058 Frmd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007209.1 MGP_C3HHeJ_G0005907.1 mouse_genomes_project 2 115544002 115545265 - Gm29234 lincRNA lincRNA MGP_C3HHeJ_T0056536.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120652546 120672828 - MGP_C3HHeJ_P0056536 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0056537.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120654600 120656421 - Rmdn3 protein_coding retained_intron MGP_C3HHeJ_T0056538.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120657963 120663243 - Rmdn3 protein_coding retained_intron MGP_C3HHeJ_T0056539.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120661964 120663252 - Rmdn3 protein_coding retained_intron MGP_C3HHeJ_T0056540.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120669831 120672618 - MGP_C3HHeJ_P0056540 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0056541.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120669861 120672742 - MGP_C3HHeJ_P0056541 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0056542.1 MGP_C3HHeJ_G0026052.1 mouse_genomes_project 2 120669871 120672758 - MGP_C3HHeJ_P0056542 Rmdn3 protein_coding protein_coding MGP_C3HHeJ_T0053219.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25982400 26004449 + Olfm1 protein_coding processed_transcript MGP_C3HHeJ_T0053220.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25982400 26020330 + MGP_C3HHeJ_P0053220 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0053221.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25982501 26020604 + MGP_C3HHeJ_P0053221 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0053222.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25994967 26004449 + MGP_C3HHeJ_P0053222 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0053223.1 MGP_C3HHeJ_G0025253.1 mouse_genomes_project 2 25994967 26020604 + MGP_C3HHeJ_P0053223 Olfm1 protein_coding protein_coding MGP_C3HHeJ_T0057766.1 MGP_C3HHeJ_G0026317.1 mouse_genomes_project 2 148974316 148977398 + MGP_C3HHeJ_P0057766 Insm1 protein_coding protein_coding MGP_C3HHeJ_T0055444.1 MGP_C3HHeJ_G0025694.1 mouse_genomes_project 2 86191104 86192046 - MGP_C3HHeJ_P0055444 Olfr1053 protein_coding protein_coding MGP_C3HHeJ_T0058524.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160832715 160887821 + MGP_C3HHeJ_P0058524 Src protein_coding protein_coding MGP_C3HHeJ_T0058525.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160838969 160870641 + Src protein_coding processed_transcript MGP_C3HHeJ_T0058526.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839133 160887848 + MGP_C3HHeJ_P0058526 Src protein_coding protein_coding MGP_C3HHeJ_T0058527.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839146 160887824 + MGP_C3HHeJ_P0058527 Src protein_coding protein_coding MGP_C3HHeJ_T0058528.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839245 160873814 + Src protein_coding processed_transcript MGP_C3HHeJ_T0058529.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160839245 160870540 + Src protein_coding processed_transcript MGP_C3HHeJ_T0058530.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160870604 160887824 + MGP_C3HHeJ_P0058530 Src protein_coding protein_coding MGP_C3HHeJ_T0058531.1 MGP_C3HHeJ_G0026499.1 mouse_genomes_project 2 160872307 160885590 + MGP_C3HHeJ_P0058531 Src protein_coding protein_coding MGP_C3HHeJ_T0054813.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544215 68655586 - MGP_C3HHeJ_P0054813 Abcb11 protein_coding protein_coding MGP_C3HHeJ_T0054814.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544222 68655588 - MGP_C3HHeJ_P0054814 Abcb11 protein_coding protein_coding MGP_C3HHeJ_T0054815.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544222 68655572 - MGP_C3HHeJ_P0054815 Abcb11 protein_coding protein_coding MGP_C3HHeJ_T0054816.1 MGP_C3HHeJ_G0025529.1 mouse_genomes_project 2 68544243 68545012 - Abcb11 protein_coding processed_transcript MGP_C3HHeJ_T0057964.1 MGP_C3HHeJ_G0026379.1 mouse_genomes_project 2 155529749 155537115 - MGP_C3HHeJ_P0057964 Defb23 protein_coding protein_coding MGP_C3HHeJ_T0017661.1 MGP_C3HHeJ_G0015239.1 mouse_genomes_project 2 153572813 153576835 + Gm14123 processed_transcript processed_transcript MGP_C3HHeJ_T0013493.1 MGP_C3HHeJ_G0011597.1 mouse_genomes_project 2 85015677 85015898 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001022.1 MGP_C3HHeJ_G0000959.1 mouse_genomes_project 2 12437397 12439781 - TEC TEC MGP_C3HHeJ_T0007279.1 MGP_C3HHeJ_G0005963.1 mouse_genomes_project 2 157951616 157952916 - Gm14216 lincRNA lincRNA MGP_C3HHeJ_T0007280.1 MGP_C3HHeJ_G0005963.1 mouse_genomes_project 2 157951634 157971001 - Gm14216 lincRNA lincRNA MGP_C3HHeJ_T0055341.1 MGP_C3HHeJ_G0025637.1 mouse_genomes_project 2 84467277 84473501 - MGP_C3HHeJ_P0055341 Clp1 protein_coding protein_coding MGP_C3HHeJ_T0055342.1 MGP_C3HHeJ_G0025637.1 mouse_genomes_project 2 84468036 84473609 - MGP_C3HHeJ_P0055342 Clp1 protein_coding protein_coding MGP_C3HHeJ_T0055343.1 MGP_C3HHeJ_G0025637.1 mouse_genomes_project 2 84468038 84473535 - Clp1 protein_coding processed_transcript MGP_C3HHeJ_T0013352.1 MGP_C3HHeJ_G0011456.1 mouse_genomes_project 2 35326588 35326997 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059243.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178433365 178446087 + MGP_C3HHeJ_P0059243 Npepl1 protein_coding protein_coding MGP_C3HHeJ_T0059244.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178434170 178443399 + MGP_C3HHeJ_P0059244 Npepl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059245.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178434196 178445719 + Npepl1 protein_coding retained_intron MGP_C3HHeJ_T0059246.1 MGP_C3HHeJ_G0026681.1 mouse_genomes_project 2 178434589 178439120 + Npepl1 protein_coding retained_intron MGP_C3HHeJ_T0100472.1 MGP_C3HHeJ_G0038666.1 mouse_genomes_project 2 97804260 97804389 - Gm23317 snoRNA snoRNA MGP_C3HHeJ_T0100444.1 MGP_C3HHeJ_G0038638.1 mouse_genomes_project 2 30947051 30947179 + Gm24165 snoRNA snoRNA MGP_C3HHeJ_T0058805.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223059 168233637 + MGP_C3HHeJ_P0058805 Pigt protein_coding protein_coding MGP_C3HHeJ_T0058806.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223074 168228655 + MGP_C3HHeJ_P0058806 Pigt protein_coding protein_coding MGP_C3HHeJ_T0058807.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223085 168228931 + Pigt protein_coding retained_intron MGP_C3HHeJ_T0058808.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168223100 168233637 + MGP_C3HHeJ_P0058808 Pigt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058809.1 MGP_C3HHeJ_G0026573.1 mouse_genomes_project 2 168225456 168227146 + Pigt protein_coding retained_intron MGP_C3HHeJ_T0007248.1 MGP_C3HHeJ_G0005937.1 mouse_genomes_project 2 134856231 134920862 + AU019990 lincRNA lincRNA MGP_C3HHeJ_T0007249.1 MGP_C3HHeJ_G0005937.1 mouse_genomes_project 2 134856231 134918054 + AU019990 lincRNA lincRNA MGP_C3HHeJ_T0054529.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57325206 57463561 - Acvr1 protein_coding processed_transcript MGP_C3HHeJ_T0054530.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57390203 57475549 - MGP_C3HHeJ_P0054530 Acvr1 protein_coding protein_coding MGP_C3HHeJ_T0054531.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57390212 57518619 - MGP_C3HHeJ_P0054531 Acvr1 protein_coding protein_coding MGP_C3HHeJ_T0054533.1 MGP_C3HHeJ_G0025481.1 mouse_genomes_project 2 57423906 57488766 - MGP_C3HHeJ_P0054533 Acvr1 protein_coding protein_coding MGP_C3HHeJ_T0057346.1 MGP_C3HHeJ_G0026228.1 mouse_genomes_project 2 132760918 132762853 - MGP_C3HHeJ_P0057346 Avp protein_coding protein_coding MGP_C3HHeJ_T0056157.1 MGP_C3HHeJ_G0025933.1 mouse_genomes_project 2 104790588 104790873 - MGP_C3HHeJ_P0056157 Gm10799 protein_coding protein_coding MGP_C3HHeJ_T0057800.1 MGP_C3HHeJ_G0026328.1 mouse_genomes_project 2 151537998 151541425 + MGP_C3HHeJ_P0057800 Nxt1 protein_coding protein_coding MGP_C3HHeJ_T0057801.1 MGP_C3HHeJ_G0026328.1 mouse_genomes_project 2 151538023 151541425 + MGP_C3HHeJ_P0057801 Nxt1 protein_coding protein_coding MGP_C3HHeJ_T0001047.1 MGP_C3HHeJ_G0000984.1 mouse_genomes_project 2 38077529 38089948 + TEC TEC MGP_C3HHeJ_T0004059.1 MGP_C3HHeJ_G0003588.1 mouse_genomes_project 2 156803377 156804974 - Dnmt3bos antisense antisense MGP_C3HHeJ_T0013560.1 MGP_C3HHeJ_G0011664.1 mouse_genomes_project 2 107794241 107794845 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056790.1 MGP_C3HHeJ_G0026101.1 mouse_genomes_project 2 122758871 122771935 - MGP_C3HHeJ_P0056790 Lcmt2 protein_coding protein_coding MGP_C3HHeJ_T0056791.1 MGP_C3HHeJ_G0026101.1 mouse_genomes_project 2 122769154 122772210 - MGP_C3HHeJ_P0056791 Lcmt2 protein_coding protein_coding MGP_C3HHeJ_T0013344.1 MGP_C3HHeJ_G0011448.1 mouse_genomes_project 2 32629554 32629810 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101911.1 MGP_C3HHeJ_G0039876.1 mouse_genomes_project 2 88097084 88097976 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013282.1 MGP_C3HHeJ_G0011386.1 mouse_genomes_project 2 8667083 8668080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052346.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432628 11496403 + MGP_C3HHeJ_P0052346 Stam protein_coding protein_coding MGP_C3HHeJ_T0052347.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432638 11474658 + Stam protein_coding processed_transcript MGP_C3HHeJ_T0052348.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432719 11491134 + MGP_C3HHeJ_P0052348 Stam protein_coding protein_coding MGP_C3HHeJ_T0052349.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432752 11494309 + MGP_C3HHeJ_P0052349 Stam protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052350.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11432957 11475118 + MGP_C3HHeJ_P0052350 Stam protein_coding protein_coding MGP_C3HHeJ_T0052351.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11474381 11475213 + Stam protein_coding retained_intron MGP_C3HHeJ_T0052352.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11475091 11477435 + Stam protein_coding processed_transcript MGP_C3HHeJ_T0052353.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11476888 11485951 + Stam protein_coding retained_intron MGP_C3HHeJ_T0052354.1 MGP_C3HHeJ_G0025093.1 mouse_genomes_project 2 11480166 11485893 + Stam protein_coding retained_intron MGP_C3HHeJ_T0013618.1 MGP_C3HHeJ_G0011722.1 mouse_genomes_project 2 134343304 134344294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013698.1 MGP_C3HHeJ_G0011802.1 mouse_genomes_project 2 161885047 161885358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056325.1 MGP_C3HHeJ_G0025985.1 mouse_genomes_project 2 112701277 112702216 - MGP_C3HHeJ_P0056325 protein_coding protein_coding MGP_C3HHeJ_T0013565.1 MGP_C3HHeJ_G0011669.1 mouse_genomes_project 2 109508334 109508594 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054432.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50664383 50676990 - MGP_C3HHeJ_P0054432 Rbm43 protein_coding protein_coding MGP_C3HHeJ_T0054433.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50664383 50677146 - MGP_C3HHeJ_P0054433 Rbm43 protein_coding protein_coding MGP_C3HHeJ_T0054434.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50664386 50676627 - MGP_C3HHeJ_P0054434 Rbm43 protein_coding protein_coding MGP_C3HHeJ_T0054435.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50665317 50666947 - Rbm43 protein_coding processed_transcript MGP_C3HHeJ_T0054436.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50665582 50673691 - Rbm43 protein_coding processed_transcript MGP_C3HHeJ_T0054437.1 MGP_C3HHeJ_G0025461.1 mouse_genomes_project 2 50665801 50676657 - Rbm43 protein_coding processed_transcript MGP_C3HHeJ_T0056773.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636776 122643472 + MGP_C3HHeJ_P0056773 Ccndbp1 protein_coding protein_coding MGP_C3HHeJ_T0056774.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636811 122641288 + Ccndbp1 protein_coding processed_transcript MGP_C3HHeJ_T0056775.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636816 122644849 + MGP_C3HHeJ_P0056775 Ccndbp1 protein_coding protein_coding MGP_C3HHeJ_T0056776.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122636854 122645233 + MGP_C3HHeJ_P0056776 Ccndbp1 protein_coding protein_coding MGP_C3HHeJ_T0056777.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122637048 122638919 + Ccndbp1 protein_coding retained_intron MGP_C3HHeJ_T0056778.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122639394 122640096 + Ccndbp1 protein_coding retained_intron MGP_C3HHeJ_T0056779.1 MGP_C3HHeJ_G0026097.1 mouse_genomes_project 2 122640830 122641300 + Ccndbp1 protein_coding processed_transcript MGP_C3HHeJ_T0058677.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571569 166576561 + Srsf6 protein_coding retained_intron MGP_C3HHeJ_T0058678.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571569 166578477 + MGP_C3HHeJ_P0058678 Srsf6 protein_coding protein_coding MGP_C3HHeJ_T0058679.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571603 166576379 + MGP_C3HHeJ_P0058679 Srsf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058680.1 MGP_C3HHeJ_G0026530.1 mouse_genomes_project 2 166571702 166573547 + MGP_C3HHeJ_P0058680 Srsf6 protein_coding protein_coding MGP_C3HHeJ_T0052611.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22033588 22090509 - MGP_C3HHeJ_P0052611 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052612.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22034422 22036111 - Pax8 protein_coding retained_intron MGP_C3HHeJ_T0052613.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22034548 22090007 - MGP_C3HHeJ_P0052613 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052614.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22034576 22090007 - MGP_C3HHeJ_P0052614 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052615.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22043537 22090484 - MGP_C3HHeJ_P0052615 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052616.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22055063 22090125 - MGP_C3HHeJ_P0052616 Pax8 protein_coding protein_coding MGP_C3HHeJ_T0052617.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22056884 22059787 - Pax8 protein_coding processed_transcript MGP_C3HHeJ_T0052618.1 MGP_C3HHeJ_G0025144.1 mouse_genomes_project 2 22086797 22090484 - Pax8 protein_coding retained_intron MGP_C3HHeJ_T0000991.1 MGP_C3HHeJ_G0000928.1 mouse_genomes_project 2 6804618 6805314 - TEC TEC MGP_C3HHeJ_T0057425.1 MGP_C3HHeJ_G0026244.1 mouse_genomes_project 2 133389231 133394117 - MGP_C3HHeJ_P0057425 Cenpb protein_coding protein_coding MGP_C3HHeJ_T0058785.1 MGP_C3HHeJ_G0026567.1 mouse_genomes_project 2 168127349 168138886 + Rbpjl protein_coding retained_intron MGP_C3HHeJ_T0058786.1 MGP_C3HHeJ_G0026567.1 mouse_genomes_project 2 168127402 168139543 + MGP_C3HHeJ_P0058786 Rbpjl protein_coding protein_coding MGP_C3HHeJ_T0058787.1 MGP_C3HHeJ_G0026567.1 mouse_genomes_project 2 168127417 168135549 + Rbpjl protein_coding processed_transcript MGP_C3HHeJ_T0054225.1 MGP_C3HHeJ_G0025431.1 mouse_genomes_project 2 35808417 35809257 + Gpr21 protein_coding processed_transcript MGP_C3HHeJ_T0054227.1 MGP_C3HHeJ_G0025431.1 mouse_genomes_project 2 35808711 35812689 + MGP_C3HHeJ_P0054227 Gpr21 protein_coding protein_coding MGP_C3HHeJ_T0010411.1 MGP_C3HHeJ_G0008544.1 mouse_genomes_project 2 186202204 186202273 - Mir7006 miRNA miRNA MGP_C3HHeJ_T0101923.1 MGP_C3HHeJ_G0039888.1 mouse_genomes_project 2 110433037 110457433 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055509.1 MGP_C3HHeJ_G0025748.1 mouse_genomes_project 2 87766119 87767052 - MGP_C3HHeJ_P0055509 Olfr1135 protein_coding protein_coding MGP_C3HHeJ_T0013684.1 MGP_C3HHeJ_G0011788.1 mouse_genomes_project 2 158830322 158830784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052697.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726204 22728016 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0052698.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726222 22731617 + MGP_C3HHeJ_P0052698 Entpd8 protein_coding protein_coding MGP_C3HHeJ_T0052699.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726225 22731617 + MGP_C3HHeJ_P0052699 Entpd8 protein_coding protein_coding MGP_C3HHeJ_T0052700.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22726409 22731616 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0052701.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22727711 22731053 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0052702.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22727718 22731617 + MGP_C3HHeJ_P0052702 Entpd8 protein_coding protein_coding MGP_C3HHeJ_T0052703.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22727933 22729635 + MGP_C3HHeJ_P0052703 Entpd8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052704.1 MGP_C3HHeJ_G0025153.1 mouse_genomes_project 2 22730577 22731475 + Entpd8 protein_coding retained_intron MGP_C3HHeJ_T0059124.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172469756 172586327 - MGP_C3HHeJ_P0059124 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059125.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172469756 172586222 - MGP_C3HHeJ_P0059125 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059126.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172469759 172548202 - Nfatc2 protein_coding processed_transcript MGP_C3HHeJ_T0059127.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172514238 172598602 - Nfatc2 protein_coding processed_transcript MGP_C3HHeJ_T0059128.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172515142 172598627 - MGP_C3HHeJ_P0059128 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059129.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172515428 172586153 - MGP_C3HHeJ_P0059129 Nfatc2 protein_coding protein_coding MGP_C3HHeJ_T0059130.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172529503 172586293 - Nfatc2 protein_coding retained_intron MGP_C3HHeJ_T0059131.1 MGP_C3HHeJ_G0026645.1 mouse_genomes_project 2 172562396 172586327 - Nfatc2 protein_coding retained_intron MGP_C3HHeJ_T0007145.1 MGP_C3HHeJ_G0005854.1 mouse_genomes_project 2 72971620 72989488 + Gm13708 lincRNA lincRNA MGP_C3HHeJ_T0058068.1 MGP_C3HHeJ_G0026413.1 mouse_genomes_project 2 156770376 156786095 - MGP_C3HHeJ_P0058068 Commd7 protein_coding protein_coding MGP_C3HHeJ_T0058069.1 MGP_C3HHeJ_G0026413.1 mouse_genomes_project 2 156772173 156786045 - Commd7 protein_coding retained_intron MGP_C3HHeJ_T0058070.1 MGP_C3HHeJ_G0026413.1 mouse_genomes_project 2 156772173 156786054 - MGP_C3HHeJ_P0058070 Commd7 protein_coding protein_coding MGP_C3HHeJ_T0013442.1 MGP_C3HHeJ_G0011546.1 mouse_genomes_project 2 68111947 68112337 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013273.1 MGP_C3HHeJ_G0011377.1 mouse_genomes_project 2 3161763 3163247 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007225.1 MGP_C3HHeJ_G0005918.1 mouse_genomes_project 2 118837700 118842146 - Gm13982 lincRNA lincRNA MGP_C3HHeJ_T0054263.1 MGP_C3HHeJ_G0025437.1 mouse_genomes_project 2 37017474 37035188 - MGP_C3HHeJ_P0054263 Nr5a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054264.1 MGP_C3HHeJ_G0025437.1 mouse_genomes_project 2 37024779 37034646 - Nr5a1 protein_coding retained_intron MGP_C3HHeJ_T0099224.1 MGP_C3HHeJ_G0037418.1 mouse_genomes_project 2 155485382 155485445 + Gm27343 snRNA snRNA MGP_C3HHeJ_T0013688.1 MGP_C3HHeJ_G0011792.1 mouse_genomes_project 2 159668389 159668933 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052097.1 MGP_C3HHeJ_G0025054.1 mouse_genomes_project 2 2162703 2266752 + MGP_C3HHeJ_P0052097 Ccdc3 protein_coding protein_coding MGP_C3HHeJ_T0004050.1 MGP_C3HHeJ_G0003580.1 mouse_genomes_project 2 154578287 154579905 - Gm14167 antisense antisense MGP_C3HHeJ_T0013678.1 MGP_C3HHeJ_G0011782.1 mouse_genomes_project 2 157941044 157941265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054160.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34405631 34461579 + MGP_C3HHeJ_P0054160 Mrrf protein_coding protein_coding MGP_C3HHeJ_T0054161.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34405640 34408059 + Mrrf protein_coding retained_intron MGP_C3HHeJ_T0054162.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34405876 34417150 + MGP_C3HHeJ_P0054162 Mrrf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054163.1 MGP_C3HHeJ_G0025396.1 mouse_genomes_project 2 34416333 34430191 + Mrrf protein_coding processed_transcript MGP_C3HHeJ_T0052566.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20690858 20735505 + MGP_C3HHeJ_P0052566 Yme1l1 protein_coding protein_coding MGP_C3HHeJ_T0052567.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20691007 20711582 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052568.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20691017 20695105 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052569.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20691322 20699104 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052570.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20702899 20708110 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0052571.1 MGP_C3HHeJ_G0025131.1 mouse_genomes_project 2 20728585 20730822 + Yme1l1 protein_coding processed_transcript MGP_C3HHeJ_T0056105.1 MGP_C3HHeJ_G0025925.1 mouse_genomes_project 2 104176055 104207174 - MGP_C3HHeJ_P0056105 Cat protein_coding protein_coding MGP_C3HHeJ_T0056106.1 MGP_C3HHeJ_G0025925.1 mouse_genomes_project 2 104176800 104207139 - MGP_C3HHeJ_P0056106 Cat protein_coding protein_coding MGP_C3HHeJ_T0003822.1 MGP_C3HHeJ_G0003417.1 mouse_genomes_project 2 3473815 3478063 - Gm13388 antisense antisense MGP_C3HHeJ_T0003864.1 MGP_C3HHeJ_G0003449.1 mouse_genomes_project 2 26386641 26404611 + Gm13381 antisense antisense MGP_C3HHeJ_T0003865.1 MGP_C3HHeJ_G0003449.1 mouse_genomes_project 2 26386972 26404893 + Gm13381 antisense antisense MGP_C3HHeJ_T0001019.1 MGP_C3HHeJ_G0000956.1 mouse_genomes_project 2 12113899 12116263 - TEC TEC MGP_C3HHeJ_T0054178.1 MGP_C3HHeJ_G0025407.1 mouse_genomes_project 2 35059120 35062312 + MGP_C3HHeJ_P0054178 Olfr348 protein_coding protein_coding MGP_C3HHeJ_T0054179.1 MGP_C3HHeJ_G0025407.1 mouse_genomes_project 2 35061370 35062312 + MGP_C3HHeJ_P0054179 Olfr348 protein_coding protein_coding MGP_C3HHeJ_T0055295.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179250 84220329 - MGP_C3HHeJ_P0055295 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055296.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179250 84221824 - MGP_C3HHeJ_P0055296 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055297.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179255 84181029 - Tfpi protein_coding processed_transcript MGP_C3HHeJ_T0055298.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84179255 84220719 - MGP_C3HHeJ_P0055298 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055299.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84224802 - MGP_C3HHeJ_P0055299 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055300.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84224814 - MGP_C3HHeJ_P0055300 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055301.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84224787 - MGP_C3HHeJ_P0055301 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055302.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84186574 84204248 - MGP_C3HHeJ_P0055302 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055303.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84187157 84220348 - MGP_C3HHeJ_P0055303 Tfpi protein_coding protein_coding MGP_C3HHeJ_T0055304.1 MGP_C3HHeJ_G0025629.1 mouse_genomes_project 2 84190503 84220344 - Tfpi protein_coding processed_transcript MGP_C3HHeJ_T0058954.1 MGP_C3HHeJ_G0026610.1 mouse_genomes_project 2 169164506 169179744 - MGP_C3HHeJ_P0058954 Zfp334 protein_coding protein_coding MGP_C3HHeJ_T0056897.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123097641 123102886 + MGP_C3HHeJ_P0056897 Hypk protein_coding protein_coding MGP_C3HHeJ_T0056898.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101071 123102812 + Hypk protein_coding retained_intron MGP_C3HHeJ_T0056899.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101341 123103048 + MGP_C3HHeJ_P0056899 Hypk protein_coding protein_coding MGP_C3HHeJ_T0056900.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101502 123102685 + Hypk protein_coding retained_intron MGP_C3HHeJ_T0056901.1 MGP_C3HHeJ_G0026115.1 mouse_genomes_project 2 123101512 123102739 + Hypk protein_coding processed_transcript MGP_C3HHeJ_T0055230.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407112 79516949 + MGP_C3HHeJ_P0055230 Ppp1r1c protein_coding protein_coding MGP_C3HHeJ_T0055231.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407254 79515168 + MGP_C3HHeJ_P0055231 Ppp1r1c protein_coding protein_coding MGP_C3HHeJ_T0055232.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407255 79522229 + MGP_C3HHeJ_P0055232 Ppp1r1c protein_coding protein_coding MGP_C3HHeJ_T0055233.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79407394 79525132 + Ppp1r1c protein_coding processed_transcript MGP_C3HHeJ_T0055234.1 MGP_C3HHeJ_G0025612.1 mouse_genomes_project 2 79491933 79515924 + Ppp1r1c protein_coding processed_transcript MGP_C3HHeJ_T0013635.1 MGP_C3HHeJ_G0011739.1 mouse_genomes_project 2 143722586 143723372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101870.1 MGP_C3HHeJ_G0039835.1 mouse_genomes_project 2 18607487 18708628 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013532.1 MGP_C3HHeJ_G0011636.1 mouse_genomes_project 2 98482184 98482673 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055514.1 MGP_C3HHeJ_G0025753.1 mouse_genomes_project 2 87852930 87853865 - MGP_C3HHeJ_P0055514 Olfr1141 protein_coding protein_coding MGP_C3HHeJ_T0056322.1 MGP_C3HHeJ_G0025982.1 mouse_genomes_project 2 112606833 112607730 + MGP_C3HHeJ_P0056322 Olfr1289 protein_coding protein_coding MGP_C3HHeJ_T0007091.1 MGP_C3HHeJ_G0005810.1 mouse_genomes_project 2 31636812 31650614 + Gm13530 lincRNA lincRNA MGP_C3HHeJ_T0010355.1 MGP_C3HHeJ_G0008488.1 mouse_genomes_project 2 104567327 104567423 + Gm22757 miRNA miRNA MGP_C3HHeJ_T0059121.1 MGP_C3HHeJ_G0026644.1 mouse_genomes_project 2 172244974 172266743 - MGP_C3HHeJ_P0059121 Kcng1 protein_coding protein_coding MGP_C3HHeJ_T0059122.1 MGP_C3HHeJ_G0026644.1 mouse_genomes_project 2 172246555 172255039 - MGP_C3HHeJ_P0059122 Kcng1 protein_coding protein_coding MGP_C3HHeJ_T0059123.1 MGP_C3HHeJ_G0026644.1 mouse_genomes_project 2 172254806 172268157 - MGP_C3HHeJ_P0059123 Kcng1 protein_coding protein_coding MGP_C3HHeJ_T0013470.1 MGP_C3HHeJ_G0011574.1 mouse_genomes_project 2 78254384 78255638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013391.1 MGP_C3HHeJ_G0011495.1 mouse_genomes_project 2 49607479 49609351 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052535.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406468 20423643 + Pdss1 protein_coding processed_transcript MGP_C3HHeJ_T0052536.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406468 20450566 + MGP_C3HHeJ_P0052536 Pdss1 protein_coding protein_coding MGP_C3HHeJ_T0052537.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406541 20427157 + MGP_C3HHeJ_P0052537 Pdss1 protein_coding protein_coding MGP_C3HHeJ_T0052538.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406565 20412774 + MGP_C3HHeJ_P0052538 Pdss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052539.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20406994 20417768 + MGP_C3HHeJ_P0052539 Pdss1 protein_coding protein_coding MGP_C3HHeJ_T0052540.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20444372 20450555 + Pdss1 protein_coding retained_intron MGP_C3HHeJ_T0052541.1 MGP_C3HHeJ_G0025127.1 mouse_genomes_project 2 20445808 20450542 + MGP_C3HHeJ_P0052541 Pdss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055873.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608106 92790306 + MGP_C3HHeJ_P0055873 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055874.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608175 92790312 + MGP_C3HHeJ_P0055874 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055875.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608268 92640850 + Phf21a protein_coding processed_transcript MGP_C3HHeJ_T0055876.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608276 92789357 + MGP_C3HHeJ_P0055876 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055877.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608276 92747337 + MGP_C3HHeJ_P0055877 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055878.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608302 92641359 + Phf21a protein_coding retained_intron MGP_C3HHeJ_T0055879.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608302 92648186 + MGP_C3HHeJ_P0055879 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055880.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92608780 92655037 + MGP_C3HHeJ_P0055880 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055881.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92610055 92648189 + MGP_C3HHeJ_P0055881 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055882.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92610079 92789365 + MGP_C3HHeJ_P0055882 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055883.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92611061 92648201 + MGP_C3HHeJ_P0055883 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055884.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055884 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055885.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055885 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055886.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055886 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055887.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648066 92793143 + MGP_C3HHeJ_P0055887 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055888.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648158 92793143 + MGP_C3HHeJ_P0055888 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055889.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92648166 92754160 + MGP_C3HHeJ_P0055889 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055890.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92655040 92788894 + MGP_C3HHeJ_P0055890 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055891.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92747496 92757722 + MGP_C3HHeJ_P0055891 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055892.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92757750 92787641 + MGP_C3HHeJ_P0055892 Phf21a protein_coding protein_coding MGP_C3HHeJ_T0055893.1 MGP_C3HHeJ_G0025884.1 mouse_genomes_project 2 92777376 92785454 + Phf21a protein_coding retained_intron MGP_C3HHeJ_T0055598.1 MGP_C3HHeJ_G0025826.1 mouse_genomes_project 2 89689259 89690490 - MGP_C3HHeJ_P0055598 Olfr1243 protein_coding protein_coding MGP_C3HHeJ_T0055599.1 MGP_C3HHeJ_G0025826.1 mouse_genomes_project 2 89690138 89693142 - Olfr1243 protein_coding processed_transcript MGP_C3HHeJ_T0013317.1 MGP_C3HHeJ_G0011421.1 mouse_genomes_project 2 20524595 20525132 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007291.1 MGP_C3HHeJ_G0005972.1 mouse_genomes_project 2 163463207 163497687 - Gm14223 lincRNA lincRNA MGP_C3HHeJ_T0013681.1 MGP_C3HHeJ_G0011785.1 mouse_genomes_project 2 158735016 158735331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013489.1 MGP_C3HHeJ_G0011593.1 mouse_genomes_project 2 83253709 83253919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054182.1 MGP_C3HHeJ_G0025410.1 mouse_genomes_project 2 35128248 35129187 + MGP_C3HHeJ_P0054182 Olfr350 protein_coding protein_coding MGP_C3HHeJ_T0058715.1 MGP_C3HHeJ_G0026541.1 mouse_genomes_project 2 167182210 167192878 + MGP_C3HHeJ_P0058715 R3hdml protein_coding protein_coding MGP_C3HHeJ_T0056431.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118265931 118281583 + MGP_C3HHeJ_P0056431 Tmco5 protein_coding protein_coding MGP_C3HHeJ_T0056432.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118265934 118281539 + MGP_C3HHeJ_P0056432 Tmco5 protein_coding protein_coding MGP_C3HHeJ_T0056433.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118265948 118281896 + MGP_C3HHeJ_P0056433 Tmco5 protein_coding protein_coding MGP_C3HHeJ_T0056434.1 MGP_C3HHeJ_G0026026.1 mouse_genomes_project 2 118275377 118281896 + Tmco5 protein_coding processed_transcript MGP_C3HHeJ_T0053369.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27802980 27814864 + MGP_C3HHeJ_P0053369 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053370.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27802993 27806337 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053371.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803479 27836012 + MGP_C3HHeJ_P0053371 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053372.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803544 27836012 + MGP_C3HHeJ_P0053372 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053373.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803554 27844568 + MGP_C3HHeJ_P0053373 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053374.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803554 27845218 + MGP_C3HHeJ_P0053374 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053375.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803557 27844568 + MGP_C3HHeJ_P0053375 Odf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053376.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803570 27816033 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053377.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803574 27816003 + MGP_C3HHeJ_P0053377 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053378.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803576 27845218 + MGP_C3HHeJ_P0053378 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053379.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803577 27836012 + MGP_C3HHeJ_P0053379 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053380.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803584 27815250 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053381.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803593 27817836 + MGP_C3HHeJ_P0053381 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053382.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803654 27845219 + MGP_C3HHeJ_P0053382 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053383.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803822 27836012 + MGP_C3HHeJ_P0053383 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053384.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803842 27804750 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053385.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803902 27836012 + MGP_C3HHeJ_P0053385 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053386.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27803915 27844568 + MGP_C3HHeJ_P0053386 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053387.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27804299 27836009 + MGP_C3HHeJ_P0053387 Odf2 protein_coding protein_coding MGP_C3HHeJ_T0053388.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27805755 27814878 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053389.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27817300 27828300 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053390.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27817331 27828741 + Odf2 protein_coding processed_transcript MGP_C3HHeJ_T0053391.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27826050 27828704 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053392.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27827820 27832622 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0053393.1 MGP_C3HHeJ_G0025282.1 mouse_genomes_project 2 27838944 27840218 + Odf2 protein_coding retained_intron MGP_C3HHeJ_T0013437.1 MGP_C3HHeJ_G0011541.1 mouse_genomes_project 2 65715141 65716292 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056584.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161477 121198770 + MGP_C3HHeJ_P0056584 Nusap1 protein_coding protein_coding MGP_C3HHeJ_T0056585.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161873 121182000 + Nusap1 protein_coding processed_transcript MGP_C3HHeJ_T0056586.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161896 121201074 + MGP_C3HHeJ_P0056586 Nusap1 protein_coding protein_coding MGP_C3HHeJ_T0056587.1 MGP_C3HHeJ_G0026067.1 mouse_genomes_project 2 121161908 121174628 + Nusap1 protein_coding processed_transcript MGP_C3HHeJ_T0055458.1 MGP_C3HHeJ_G0025707.1 mouse_genomes_project 2 86707239 86708175 - MGP_C3HHeJ_P0055458 Olfr1089 protein_coding protein_coding MGP_C3HHeJ_T0010401.1 MGP_C3HHeJ_G0008534.1 mouse_genomes_project 2 177127141 177127219 - Gm22773 miRNA miRNA MGP_C3HHeJ_T0101886.1 MGP_C3HHeJ_G0039851.1 mouse_genomes_project 2 69593966 69596140 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054261.1 MGP_C3HHeJ_G0025436.1 mouse_genomes_project 2 36908527 36966888 - MGP_C3HHeJ_P0054261 Psmb7 protein_coding protein_coding MGP_C3HHeJ_T0054262.1 MGP_C3HHeJ_G0025436.1 mouse_genomes_project 2 36933724 36966721 - Psmb7 protein_coding retained_intron MGP_C3HHeJ_T0003925.1 MGP_C3HHeJ_G0003498.1 mouse_genomes_project 2 69862408 69937015 - Gad1os antisense antisense MGP_C3HHeJ_T0003926.1 MGP_C3HHeJ_G0003498.1 mouse_genomes_project 2 69862715 69863939 - Gad1os antisense antisense MGP_C3HHeJ_T0055206.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938364 78940791 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0055207.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938438 79022662 + MGP_C3HHeJ_P0055207 Itga4 protein_coding protein_coding MGP_C3HHeJ_T0055208.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938510 78957840 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0055209.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938659 78978603 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0055210.1 MGP_C3HHeJ_G0025608.1 mouse_genomes_project 2 78938885 78978307 + Itga4 protein_coding processed_transcript MGP_C3HHeJ_T0059638.1 MGP_C3HHeJ_G0026756.1 mouse_genomes_project 2 186527159 186529387 + MGP_C3HHeJ_P0059638 protein_coding protein_coding MGP_C3HHeJ_T0053173.1 MGP_C3HHeJ_G0025244.1 mouse_genomes_project 2 24865353 24896572 - MGP_C3HHeJ_P0053173 Fam163b protein_coding protein_coding MGP_C3HHeJ_T0013580.1 MGP_C3HHeJ_G0011684.1 mouse_genomes_project 2 113641280 113644545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004046.1 MGP_C3HHeJ_G0003576.1 mouse_genomes_project 2 149016421 149024302 + A930019D19Rik antisense antisense MGP_C3HHeJ_T0011424.1 MGP_C3HHeJ_G0009557.1 mouse_genomes_project 2 160209468 160209714 + Gm27651 misc_RNA misc_RNA MGP_C3HHeJ_T0101935.1 MGP_C3HHeJ_G0039900.1 mouse_genomes_project 2 179454592 179457161 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013705.1 MGP_C3HHeJ_G0011809.1 mouse_genomes_project 2 166442645 166442978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054469.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192209 51458888 - MGP_C3HHeJ_P0054469 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054470.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192214 51333898 - MGP_C3HHeJ_P0054470 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054471.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192214 51459125 - MGP_C3HHeJ_P0054471 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054472.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51192214 51333905 - MGP_C3HHeJ_P0054472 Cacnb4 protein_coding protein_coding MGP_C3HHeJ_T0054473.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51331521 51332044 - Cacnb4 protein_coding processed_transcript MGP_C3HHeJ_T0054474.1 MGP_C3HHeJ_G0025467.1 mouse_genomes_project 2 51458033 51458450 - Cacnb4 protein_coding processed_transcript MGP_C3HHeJ_T0057507.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134513677 134552614 + MGP_C3HHeJ_P0057507 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0057508.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134513776 134553693 + MGP_C3HHeJ_P0057508 Cds2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057509.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134513979 134561687 + MGP_C3HHeJ_P0057509 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0057510.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134536091 134552010 + MGP_C3HHeJ_P0057510 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0057511.1 MGP_C3HHeJ_G0026260.1 mouse_genomes_project 2 134557705 134561730 + MGP_C3HHeJ_P0057511 Cds2 protein_coding protein_coding MGP_C3HHeJ_T0004075.1 MGP_C3HHeJ_G0003603.1 mouse_genomes_project 2 166023900 166027030 + Ptprtos antisense antisense MGP_C3HHeJ_T0007157.1 MGP_C3HHeJ_G0005864.1 mouse_genomes_project 2 74689556 74702484 - Gm13652 lincRNA lincRNA MGP_C3HHeJ_T0054979.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436537 71721054 + MGP_C3HHeJ_P0054979 Rapgef4 protein_coding protein_coding MGP_C3HHeJ_T0054980.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436544 71489231 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054981.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436556 71598351 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054982.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71436584 71719956 + MGP_C3HHeJ_P0054982 Rapgef4 protein_coding protein_coding MGP_C3HHeJ_T0054983.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71509434 71721052 + MGP_C3HHeJ_P0054983 Rapgef4 protein_coding protein_coding MGP_C3HHeJ_T0054984.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71509815 71598527 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054985.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71597760 71656555 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054986.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71597777 71620868 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054987.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71639181 71721052 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054988.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71659092 71668737 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0054989.1 MGP_C3HHeJ_G0025560.1 mouse_genomes_project 2 71705145 71720235 + Rapgef4 protein_coding processed_transcript MGP_C3HHeJ_T0007082.1 MGP_C3HHeJ_G0005804.1 mouse_genomes_project 2 25882897 25916364 + F730016J06Rik lincRNA lincRNA MGP_C3HHeJ_T0007083.1 MGP_C3HHeJ_G0005804.1 mouse_genomes_project 2 25882903 25902502 + F730016J06Rik lincRNA lincRNA MGP_C3HHeJ_T0007084.1 MGP_C3HHeJ_G0005804.1 mouse_genomes_project 2 25906857 25913836 + F730016J06Rik lincRNA lincRNA MGP_C3HHeJ_T0055638.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 90995031 91058332 + MGP_C3HHeJ_P0055638 Nup160 protein_coding protein_coding MGP_C3HHeJ_T0055639.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91002985 91010933 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055640.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91007515 91012652 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055641.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91008505 91020637 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055642.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91017929 91020258 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055643.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91039319 91039672 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0055644.1 MGP_C3HHeJ_G0025851.1 mouse_genomes_project 2 91054727 91057788 + Nup160 protein_coding processed_transcript MGP_C3HHeJ_T0100446.1 MGP_C3HHeJ_G0038640.1 mouse_genomes_project 2 31345788 31345925 - Gm23546 snoRNA snoRNA MGP_C3HHeJ_T0013648.1 MGP_C3HHeJ_G0011752.1 mouse_genomes_project 2 148254360 148254824 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007110.1 MGP_C3HHeJ_G0005824.1 mouse_genomes_project 2 44276162 44297473 + Gm13465 lincRNA lincRNA MGP_C3HHeJ_T0013350.1 MGP_C3HHeJ_G0011454.1 mouse_genomes_project 2 35041364 35041937 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101873.1 MGP_C3HHeJ_G0039838.1 mouse_genomes_project 2 20079052 20079543 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058823.1 MGP_C3HHeJ_G0026581.1 mouse_genomes_project 2 168395177 168402142 - MGP_C3HHeJ_P0058823 Wfdc9 protein_coding protein_coding MGP_C3HHeJ_T0058824.1 MGP_C3HHeJ_G0026581.1 mouse_genomes_project 2 168395333 168397312 - MGP_C3HHeJ_P0058824 Wfdc9 protein_coding protein_coding MGP_C3HHeJ_T0003983.1 MGP_C3HHeJ_G0003532.1 mouse_genomes_project 2 114704572 114706196 - Gm13966 antisense antisense MGP_C3HHeJ_T0054475.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51476203 51528872 - MGP_C3HHeJ_P0054475 Stam2 protein_coding protein_coding MGP_C3HHeJ_T0054476.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51486483 51528953 - MGP_C3HHeJ_P0054476 Stam2 protein_coding protein_coding MGP_C3HHeJ_T0054477.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51496380 51528852 - Stam2 protein_coding retained_intron MGP_C3HHeJ_T0054478.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51496662 51528862 - MGP_C3HHeJ_P0054478 Stam2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054479.1 MGP_C3HHeJ_G0025468.1 mouse_genomes_project 2 51506397 51528828 - MGP_C3HHeJ_P0054479 Stam2 protein_coding protein_coding MGP_C3HHeJ_T0007242.1 MGP_C3HHeJ_G0005933.1 mouse_genomes_project 2 130529966 130530891 + Gm14010 lincRNA lincRNA MGP_C3HHeJ_T0053652.1 MGP_C3HHeJ_G0025318.1 mouse_genomes_project 2 29253750 29304084 + MGP_C3HHeJ_P0053652 Ncs1 protein_coding protein_coding MGP_C3HHeJ_T0053653.1 MGP_C3HHeJ_G0025318.1 mouse_genomes_project 2 29254093 29300421 + MGP_C3HHeJ_P0053653 Ncs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013331.1 MGP_C3HHeJ_G0011435.1 mouse_genomes_project 2 26625898 26626118 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013448.1 MGP_C3HHeJ_G0011552.1 mouse_genomes_project 2 70236876 70237774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007126.1 MGP_C3HHeJ_G0005838.1 mouse_genomes_project 2 58986676 58988373 + Gm13572 lincRNA lincRNA MGP_C3HHeJ_T0056329.1 MGP_C3HHeJ_G0025989.1 mouse_genomes_project 2 112937241 112938180 + MGP_C3HHeJ_P0056329 Olfr1301 protein_coding protein_coding MGP_C3HHeJ_T0059441.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678011 185738582 - MGP_C3HHeJ_P0059441 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059442.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678011 185738496 - MGP_C3HHeJ_P0059442 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059443.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678018 185738409 - MGP_C3HHeJ_P0059443 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059444.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059444 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059445.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059445 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059446.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059446 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059447.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185678020 185738459 - MGP_C3HHeJ_P0059447 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059448.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185682013 185738543 - MGP_C3HHeJ_P0059448 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059449.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185682931 185717110 - MGP_C3HHeJ_P0059449 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059450.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185682935 185738204 - MGP_C3HHeJ_P0059450 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059451.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185683331 185738413 - MGP_C3HHeJ_P0059451 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059452.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185684835 185712224 - MGP_C3HHeJ_P0059452 Kcnq2 protein_coding protein_coding MGP_C3HHeJ_T0059453.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185684885 185697887 - Kcnq2 protein_coding processed_transcript MGP_C3HHeJ_T0059454.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185687014 185703264 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059455.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185688410 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059456.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185698706 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059457.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185698931 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059458.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738459 - Kcnq2 protein_coding processed_transcript MGP_C3HHeJ_T0059459.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738525 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059460.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0059461.1 MGP_C3HHeJ_G0026726.1 mouse_genomes_project 2 185710911 185738459 - Kcnq2 protein_coding retained_intron MGP_C3HHeJ_T0055332.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84414084 84420587 - protein_coding processed_transcript MGP_C3HHeJ_T0055333.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84414162 84420581 - protein_coding processed_transcript MGP_C3HHeJ_T0055334.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84414210 84420577 - MGP_C3HHeJ_P0055334 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055335.1 MGP_C3HHeJ_G0025634.1 mouse_genomes_project 2 84418653 84421678 - MGP_C3HHeJ_P0055335 protein_coding protein_coding MGP_C3HHeJ_T0017540.1 MGP_C3HHeJ_G0015174.1 mouse_genomes_project 2 29152400 29158215 - D330023K18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017541.1 MGP_C3HHeJ_G0015174.1 mouse_genomes_project 2 29156564 29158215 - D330023K18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0055356.1 MGP_C3HHeJ_G0025642.1 mouse_genomes_project 2 84562906 84576193 - MGP_C3HHeJ_P0055356 Smtnl1 protein_coding protein_coding MGP_C3HHeJ_T0052059.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1619402 1651310 - MGP_C3HHeJ_P0052059 Prpf18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052060.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1619402 1651415 - MGP_C3HHeJ_P0052060 Prpf18 protein_coding protein_coding MGP_C3HHeJ_T0052061.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1621281 1651435 - Prpf18 protein_coding processed_transcript MGP_C3HHeJ_T0052062.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1621372 1651442 - MGP_C3HHeJ_P0052062 Prpf18 protein_coding protein_coding MGP_C3HHeJ_T0052063.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1636251 1651410 - MGP_C3HHeJ_P0052063 Prpf18 protein_coding protein_coding MGP_C3HHeJ_T0052064.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1636275 1651416 - Prpf18 protein_coding processed_transcript MGP_C3HHeJ_T0052065.1 MGP_C3HHeJ_G0025047.1 mouse_genomes_project 2 1641757 1651432 - Prpf18 protein_coding processed_transcript MGP_C3HHeJ_T0017534.1 MGP_C3HHeJ_G0015170.1 mouse_genomes_project 2 27117563 27125450 - 6530402F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017535.1 MGP_C3HHeJ_G0015170.1 mouse_genomes_project 2 27123366 27125463 - 6530402F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017520.1 MGP_C3HHeJ_G0015162.1 mouse_genomes_project 2 22054304 22104321 + Gm13415 processed_transcript antisense MGP_C3HHeJ_T0017521.1 MGP_C3HHeJ_G0015162.1 mouse_genomes_project 2 22056721 22079817 + Gm13415 processed_transcript antisense MGP_C3HHeJ_T0017522.1 MGP_C3HHeJ_G0015162.1 mouse_genomes_project 2 22056735 22059151 + Gm13415 processed_transcript retained_intron MGP_C3HHeJ_T0013706.1 MGP_C3HHeJ_G0011810.1 mouse_genomes_project 2 166535211 166538399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003996.1 MGP_C3HHeJ_G0003541.1 mouse_genomes_project 2 120507086 120510681 + Gm14089 antisense antisense MGP_C3HHeJ_T0003843.1 MGP_C3HHeJ_G0003436.1 mouse_genomes_project 2 22829335 22831894 - Gm38287 antisense antisense MGP_C3HHeJ_T0013426.1 MGP_C3HHeJ_G0011530.1 mouse_genomes_project 2 60020929 60021549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101933.1 MGP_C3HHeJ_G0039898.1 mouse_genomes_project 2 160238155 160280613 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054329.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234815 42894620 + MGP_C3HHeJ_P0054329 Arhgap15 protein_coding protein_coding MGP_C3HHeJ_T0054330.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234825 42885290 + MGP_C3HHeJ_P0054330 Arhgap15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054331.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234860 42383967 + Arhgap15 protein_coding processed_transcript MGP_C3HHeJ_T0054332.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42234861 42885294 + MGP_C3HHeJ_P0054332 Arhgap15 protein_coding protein_coding MGP_C3HHeJ_T0054333.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42275438 42884155 + MGP_C3HHeJ_P0054333 Arhgap15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054334.1 MGP_C3HHeJ_G0025448.1 mouse_genomes_project 2 42568121 42651232 + Arhgap15 protein_coding processed_transcript MGP_C3HHeJ_T0056412.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117425259 - MGP_C3HHeJ_P0056412 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056413.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117425259 - MGP_C3HHeJ_P0056413 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056414.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117424463 - MGP_C3HHeJ_P0056414 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056415.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217363 117424463 - MGP_C3HHeJ_P0056415 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056416.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217444 117424137 - MGP_C3HHeJ_P0056416 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056417.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117217599 117423930 - MGP_C3HHeJ_P0056417 Meis2 protein_coding protein_coding MGP_C3HHeJ_T0056418.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218203 117227243 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056419.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218526 117223167 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056420.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218572 117401634 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056421.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218617 117227154 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056422.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117218758 117227243 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056423.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117219169 117227262 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056424.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117221175 117227246 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056425.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117279441 117409309 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056426.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117355400 117421935 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056427.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117398214 117408841 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0056428.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117408712 117422996 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056429.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117408712 117422105 - Meis2 protein_coding processed_transcript MGP_C3HHeJ_T0056430.1 MGP_C3HHeJ_G0026025.1 mouse_genomes_project 2 117408735 117418422 - Meis2 protein_coding retained_intron MGP_C3HHeJ_T0058058.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156470200 156535512 + MGP_C3HHeJ_P0058058 Asxl1 protein_coding protein_coding MGP_C3HHeJ_T0058059.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156470689 156535519 + MGP_C3HHeJ_P0058059 Asxl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0058060.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156472030 156481486 + Asxl1 protein_coding processed_transcript MGP_C3HHeJ_T0058061.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156472158 156521408 + Asxl1 protein_coding processed_transcript MGP_C3HHeJ_T0058062.1 MGP_C3HHeJ_G0026410.1 mouse_genomes_project 2 156522673 156528342 + Asxl1 protein_coding retained_intron MGP_C3HHeJ_T0055081.1 MGP_C3HHeJ_G0025580.1 mouse_genomes_project 2 74214286 74217468 + MGP_C3HHeJ_P0055081 Hoxd10 protein_coding protein_coding MGP_C3HHeJ_T0007340.1 MGP_C3HHeJ_G0006015.1 mouse_genomes_project 2 175393055 175398038 + 1700007M16Rik lincRNA lincRNA MGP_C3HHeJ_T0054374.1 MGP_C3HHeJ_G0025451.1 mouse_genomes_project 2 47446773 47540025 + MGP_C3HHeJ_P0054374 Acvr2a protein_coding protein_coding MGP_C3HHeJ_T0054375.1 MGP_C3HHeJ_G0025451.1 mouse_genomes_project 2 47527144 47537004 + Acvr2a protein_coding processed_transcript MGP_C3HHeJ_T0013603.1 MGP_C3HHeJ_G0011707.1 mouse_genomes_project 2 130692346 130692620 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013362.1 MGP_C3HHeJ_G0011466.1 mouse_genomes_project 2 37578631 37578994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013691.1 MGP_C3HHeJ_G0011795.1 mouse_genomes_project 2 160127938 160128530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053594.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28879209 28893040 - MGP_C3HHeJ_P0053594 Ptges protein_coding protein_coding MGP_C3HHeJ_T0053595.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28882020 28891523 - Ptges protein_coding processed_transcript MGP_C3HHeJ_T0053596.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28882034 28924002 - Ptges protein_coding processed_transcript MGP_C3HHeJ_T0053597.1 MGP_C3HHeJ_G0025311.1 mouse_genomes_project 2 28882226 28887204 - Ptges protein_coding processed_transcript MGP_C3HHeJ_T0011421.1 MGP_C3HHeJ_G0009554.1 mouse_genomes_project 2 150058498 150058822 - Gm22261 misc_RNA misc_RNA MGP_C3HHeJ_T0052142.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3358151 3488476 + MGP_C3HHeJ_P0052142 Usp6nl protein_coding protein_coding MGP_C3HHeJ_T0052143.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3358256 3463042 + Usp6nl protein_coding processed_transcript MGP_C3HHeJ_T0052144.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3387580 3485524 + MGP_C3HHeJ_P0052144 Usp6nl protein_coding protein_coding MGP_C3HHeJ_T0052145.1 MGP_C3HHeJ_G0025064.1 mouse_genomes_project 2 3462951 3466865 + Usp6nl protein_coding processed_transcript MGP_C3HHeJ_T0052198.1 MGP_C3HHeJ_G0025072.1 mouse_genomes_project 2 7292907 7333436 - MGP_C3HHeJ_P0052198 Itih2 protein_coding protein_coding MGP_C3HHeJ_T0052199.1 MGP_C3HHeJ_G0025072.1 mouse_genomes_project 2 7310826 7333848 - MGP_C3HHeJ_P0052199 Itih2 protein_coding protein_coding MGP_C3HHeJ_T0052200.1 MGP_C3HHeJ_G0025072.1 mouse_genomes_project 2 7329053 7334169 - MGP_C3HHeJ_P0052200 Itih2 protein_coding protein_coding MGP_C3HHeJ_T0055326.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410318 84411874 - MGP_C3HHeJ_P0055326 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055327.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410324 84411812 - MGP_C3HHeJ_P0055327 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055328.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410410 84411780 - MGP_C3HHeJ_P0055328 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055329.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84410798 84411801 - MGP_C3HHeJ_P0055329 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055330.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84411053 84411780 - 2700094K13Rik protein_coding retained_intron MGP_C3HHeJ_T0055331.1 MGP_C3HHeJ_G0025633.1 mouse_genomes_project 2 84411120 84411758 - MGP_C3HHeJ_P0055331 2700094K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055840.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088305 92091285 + MGP_C3HHeJ_P0055840 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055841.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088306 92091683 + MGP_C3HHeJ_P0055841 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055842.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088370 92094359 + MGP_C3HHeJ_P0055842 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055843.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92088375 92100474 + MGP_C3HHeJ_P0055843 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0055844.1 MGP_C3HHeJ_G0025877.1 mouse_genomes_project 2 92091152 92098216 + MGP_C3HHeJ_P0055844 Harbi1 protein_coding protein_coding MGP_C3HHeJ_T0052472.1 MGP_C3HHeJ_G0025117.1 mouse_genomes_project 2 17180232 17183064 + MGP_C3HHeJ_P0052472 Otud1 protein_coding protein_coding MGP_C3HHeJ_T0058888.1 MGP_C3HHeJ_G0026600.1 mouse_genomes_project 2 168657573 168678437 - MGP_C3HHeJ_P0058888 Zfp335 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058889.1 MGP_C3HHeJ_G0026600.1 mouse_genomes_project 2 168657573 168678437 - MGP_C3HHeJ_P0058889 Zfp335 protein_coding protein_coding MGP_C3HHeJ_T0058890.1 MGP_C3HHeJ_G0026600.1 mouse_genomes_project 2 168668419 168674345 - MGP_C3HHeJ_P0058890 Zfp335 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013714.1 MGP_C3HHeJ_G0011818.1 mouse_genomes_project 2 170367502 170367998 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013372.1 MGP_C3HHeJ_G0011476.1 mouse_genomes_project 2 39358007 39358971 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003998.1 MGP_C3HHeJ_G0003543.1 mouse_genomes_project 2 122929736 122932639 - Gm14978 antisense antisense MGP_C3HHeJ_T0003868.1 MGP_C3HHeJ_G0003452.1 mouse_genomes_project 2 28179492 28180922 - 1700084E18Rik antisense antisense MGP_C3HHeJ_T0003869.1 MGP_C3HHeJ_G0003452.1 mouse_genomes_project 2 28180190 28180922 - 1700084E18Rik antisense pseudogene MGP_C3HHeJ_T0055676.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91225772 91229588 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055677.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91225774 91236952 - MGP_C3HHeJ_P0055677 Ndufs3 protein_coding protein_coding MGP_C3HHeJ_T0055678.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91225776 91234811 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055679.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91229429 91236767 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055680.1 MGP_C3HHeJ_G0025856.1 mouse_genomes_project 2 91235949 91236827 - Ndufs3 protein_coding processed_transcript MGP_C3HHeJ_T0055564.1 MGP_C3HHeJ_G0025800.1 mouse_genomes_project 2 89116128 89117064 - MGP_C3HHeJ_P0055564 protein_coding protein_coding MGP_C3HHeJ_T0058094.1 MGP_C3HHeJ_G0026419.1 mouse_genomes_project 2 157076635 157089039 + MGP_C3HHeJ_P0058094 Bpifb6 protein_coding protein_coding MGP_C3HHeJ_T0058095.1 MGP_C3HHeJ_G0026419.1 mouse_genomes_project 2 157076642 157083171 + MGP_C3HHeJ_P0058095 Bpifb6 protein_coding protein_coding MGP_C3HHeJ_T0054951.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855077 70934818 + MGP_C3HHeJ_P0054951 Metap1d protein_coding protein_coding MGP_C3HHeJ_T0054952.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855134 70925540 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054953.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855152 70934821 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054954.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70855164 70934413 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054955.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70919824 70926731 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0054956.1 MGP_C3HHeJ_G0025555.1 mouse_genomes_project 2 70924996 70925866 + Metap1d protein_coding processed_transcript MGP_C3HHeJ_T0056436.1 MGP_C3HHeJ_G0026028.1 mouse_genomes_project 2 118521433 118589026 + MGP_C3HHeJ_P0056436 Spred1 protein_coding protein_coding MGP_C3HHeJ_T0056437.1 MGP_C3HHeJ_G0026028.1 mouse_genomes_project 2 118521697 118578701 + MGP_C3HHeJ_P0056437 Spred1 protein_coding protein_coding MGP_C3HHeJ_T0055336.1 MGP_C3HHeJ_G0025635.1 mouse_genomes_project 2 84420939 84430622 + MGP_C3HHeJ_P0055336 Med19 protein_coding protein_coding MGP_C3HHeJ_T0055337.1 MGP_C3HHeJ_G0025635.1 mouse_genomes_project 2 84428039 84429906 + Med19 protein_coding processed_transcript MGP_C3HHeJ_T0057781.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149816975 149884552 + MGP_C3HHeJ_P0057781 Xrn2 protein_coding protein_coding MGP_C3HHeJ_T0057782.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149835438 149844943 + Xrn2 protein_coding retained_intron MGP_C3HHeJ_T0057783.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149849216 149854400 + Xrn2 protein_coding retained_intron MGP_C3HHeJ_T0057784.1 MGP_C3HHeJ_G0026320.1 mouse_genomes_project 2 149867988 149875452 + Xrn2 protein_coding retained_intron MGP_C3HHeJ_T0057818.1 MGP_C3HHeJ_G0026336.1 mouse_genomes_project 2 151676552 151686984 + MGP_C3HHeJ_P0057818 Cst13 protein_coding protein_coding MGP_C3HHeJ_T0007243.1 MGP_C3HHeJ_G0005934.1 mouse_genomes_project 2 131355002 131371608 + A730036I17Rik lincRNA lincRNA MGP_C3HHeJ_T0007244.1 MGP_C3HHeJ_G0005934.1 mouse_genomes_project 2 131355061 131369277 + A730036I17Rik lincRNA lincRNA MGP_C3HHeJ_T0007245.1 MGP_C3HHeJ_G0005934.1 mouse_genomes_project 2 131364058 131367994 + A730036I17Rik lincRNA lincRNA MGP_C3HHeJ_T0056633.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599903 121604864 + MGP_C3HHeJ_P0056633 Jmjd7 protein_coding protein_coding MGP_C3HHeJ_T0056635.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599924 121602808 + MGP_C3HHeJ_P0056635 Jmjd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056638.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599936 121604146 + Jmjd7 protein_coding processed_transcript MGP_C3HHeJ_T0056639.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121599977 121603663 + Jmjd7 protein_coding processed_transcript MGP_C3HHeJ_T0056640.1 MGP_C3HHeJ_G0026076.1 mouse_genomes_project 2 121600014 121602655 + MGP_C3HHeJ_P0056640 Jmjd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057497.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489267 134498400 - MGP_C3HHeJ_P0057497 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057498.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489267 134498362 - MGP_C3HHeJ_P0057498 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057499.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489267 134498247 - MGP_C3HHeJ_P0057499 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057500.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134489269 134498381 - MGP_C3HHeJ_P0057500 Tmem230 protein_coding protein_coding MGP_C3HHeJ_T0057501.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134495912 134498352 - Tmem230 protein_coding processed_transcript MGP_C3HHeJ_T0057502.1 MGP_C3HHeJ_G0026258.1 mouse_genomes_project 2 134496444 134498349 - Tmem230 protein_coding retained_intron MGP_C3HHeJ_T0055493.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574090 87576758 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055494.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574090 87576749 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055495.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574108 87576929 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055496.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574951 87576842 + Pramel6 protein_coding processed_transcript MGP_C3HHeJ_T0055497.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87574951 87578402 + MGP_C3HHeJ_P0055497 Pramel6 protein_coding protein_coding MGP_C3HHeJ_T0055498.1 MGP_C3HHeJ_G0025738.1 mouse_genomes_project 2 87575984 87578395 + MGP_C3HHeJ_P0055498 Pramel6 protein_coding protein_coding MGP_C3HHeJ_T0059055.1 MGP_C3HHeJ_G0026627.1 mouse_genomes_project 2 171011138 171101625 - MGP_C3HHeJ_P0059055 Kcnb1 protein_coding protein_coding MGP_C3HHeJ_T0058575.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770119 161785130 + Lbp protein_coding processed_transcript MGP_C3HHeJ_T0058576.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770119 161774140 + MGP_C3HHeJ_P0058576 Lbp protein_coding protein_coding MGP_C3HHeJ_T0058577.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770119 161799061 + MGP_C3HHeJ_P0058577 Lbp protein_coding protein_coding MGP_C3HHeJ_T0058578.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161770238 161782790 + Lbp protein_coding retained_intron MGP_C3HHeJ_T0058579.1 MGP_C3HHeJ_G0026509.1 mouse_genomes_project 2 161778362 161788811 + MGP_C3HHeJ_P0058579 Lbp protein_coding protein_coding MGP_C3HHeJ_T0013464.1 MGP_C3HHeJ_G0011568.1 mouse_genomes_project 2 75397373 75398139 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059506.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185964926 185972401 - MGP_C3HHeJ_P0059506 Arfrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059507.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185964982 185967238 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059508.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185965591 185972302 - MGP_C3HHeJ_P0059508 Arfrp1 protein_coding protein_coding MGP_C3HHeJ_T0059509.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966412 185972393 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059510.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966525 185972379 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059511.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966599 185971864 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059512.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966806 185972420 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0059513.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185966812 185972397 - MGP_C3HHeJ_P0059513 Arfrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059514.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185968546 185972326 - Arfrp1 protein_coding processed_transcript MGP_C3HHeJ_T0059515.1 MGP_C3HHeJ_G0026736.1 mouse_genomes_project 2 185971342 185972410 - Arfrp1 protein_coding retained_intron MGP_C3HHeJ_T0013394.1 MGP_C3HHeJ_G0011498.1 mouse_genomes_project 2 50326946 50327181 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017697.1 MGP_C3HHeJ_G0015256.1 mouse_genomes_project 2 176135550 176141454 - 1700028P15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017698.1 MGP_C3HHeJ_G0015256.1 mouse_genomes_project 2 176136857 176140752 - 1700028P15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017699.1 MGP_C3HHeJ_G0015256.1 mouse_genomes_project 2 176136858 176141479 - 1700028P15Rik processed_transcript retained_intron MGP_C3HHeJ_T0010264.1 MGP_C3HHeJ_G0008397.1 mouse_genomes_project 2 7697790 7697863 + Mir466 miRNA miRNA MGP_C3HHeJ_T0004028.1 MGP_C3HHeJ_G0003563.1 mouse_genomes_project 2 135130478 135131736 - Gm14104 antisense antisense MGP_C3HHeJ_T0013652.1 MGP_C3HHeJ_G0011756.1 mouse_genomes_project 2 149680862 149681464 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007323.1 MGP_C3HHeJ_G0006000.1 mouse_genomes_project 2 172275507 172281608 - Gm14262 lincRNA lincRNA MGP_C3HHeJ_T0013514.1 MGP_C3HHeJ_G0011618.1 mouse_genomes_project 2 91366426 91366771 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056060.1 MGP_C3HHeJ_G0025918.1 mouse_genomes_project 2 103259317 103347359 + MGP_C3HHeJ_P0056060 Pamr1 protein_coding protein_coding MGP_C3HHeJ_T0056061.1 MGP_C3HHeJ_G0025918.1 mouse_genomes_project 2 103259454 103340066 + Pamr1 protein_coding retained_intron MGP_C3HHeJ_T0056062.1 MGP_C3HHeJ_G0025918.1 mouse_genomes_project 2 103340443 103345098 + Pamr1 protein_coding retained_intron MGP_C3HHeJ_T0052994.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24057754 24085179 + MGP_C3HHeJ_P0052994 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052995.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24057831 24085179 + MGP_C3HHeJ_P0052995 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052996.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24061981 24085179 + MGP_C3HHeJ_P0052996 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052997.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24065799 24085179 + MGP_C3HHeJ_P0052997 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0052998.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24067541 24069895 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0052999.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24068052 24077392 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053000.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24068242 24076862 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053001.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24072591 24085179 + MGP_C3HHeJ_P0053001 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0053002.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24072634 24077473 + MGP_C3HHeJ_P0053002 Gpsm1 protein_coding protein_coding MGP_C3HHeJ_T0053003.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24076372 24082273 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053004.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24076389 24081666 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053005.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24079230 24084217 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0053006.1 MGP_C3HHeJ_G0025216.1 mouse_genomes_project 2 24081179 24083852 + Gpsm1 protein_coding processed_transcript MGP_C3HHeJ_T0057534.1 MGP_C3HHeJ_G0026264.1 mouse_genomes_project 2 135059914 135076030 + MGP_C3HHeJ_P0057534 Chgb protein_coding protein_coding MGP_C3HHeJ_T0054755.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460371 65503683 - MGP_C3HHeJ_P0054755 Scn1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054756.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460374 65600679 - MGP_C3HHeJ_P0054756 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054757.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460375 65624985 - MGP_C3HHeJ_P0054757 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054758.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65460377 65537900 - MGP_C3HHeJ_P0054758 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054759.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65462478 65537882 - MGP_C3HHeJ_P0054759 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054760.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65462485 65503876 - MGP_C3HHeJ_P0054760 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054761.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65511742 65624988 - MGP_C3HHeJ_P0054761 Scn1a protein_coding protein_coding MGP_C3HHeJ_T0054762.1 MGP_C3HHeJ_G0025516.1 mouse_genomes_project 2 65535078 65624962 - Scn1a protein_coding retained_intron MGP_C3HHeJ_T0056362.1 MGP_C3HHeJ_G0026010.1 mouse_genomes_project 2 113681813 113699827 + MGP_C3HHeJ_P0056362 Emc7 protein_coding protein_coding MGP_C3HHeJ_T0013510.1 MGP_C3HHeJ_G0011614.1 mouse_genomes_project 2 87959144 87959491 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055581.1 MGP_C3HHeJ_G0025814.1 mouse_genomes_project 2 89401301 89402273 - MGP_C3HHeJ_P0055581 Olfr1228 protein_coding protein_coding MGP_C3HHeJ_T0058891.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168707802 168716525 + MGP_C3HHeJ_P0058891 Mmp9 protein_coding protein_coding MGP_C3HHeJ_T0058892.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168715850 168723495 + MGP_C3HHeJ_P0058892 Mmp9 protein_coding protein_coding MGP_C3HHeJ_T0058893.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168718331 168718898 + Mmp9 protein_coding retained_intron MGP_C3HHeJ_T0058894.1 MGP_C3HHeJ_G0026601.1 mouse_genomes_project 2 168722030 168723495 + Mmp9 protein_coding processed_transcript MGP_C3HHeJ_T0057030.1 MGP_C3HHeJ_G0026148.1 mouse_genomes_project 2 127470911 127473689 + MGP_C3HHeJ_P0057030 Gm9913 protein_coding protein_coding MGP_C3HHeJ_T0057210.1 MGP_C3HHeJ_G0026192.1 mouse_genomes_project 2 130695629 130698025 + MGP_C3HHeJ_P0057210 protein_coding protein_coding MGP_C3HHeJ_T0057211.1 MGP_C3HHeJ_G0026192.1 mouse_genomes_project 2 130695692 130703240 + MGP_C3HHeJ_P0057211 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057212.1 MGP_C3HHeJ_G0026192.1 mouse_genomes_project 2 130698345 130701001 + MGP_C3HHeJ_P0057212 protein_coding protein_coding MGP_C3HHeJ_T0058775.1 MGP_C3HHeJ_G0026564.1 mouse_genomes_project 2 168052814 168054475 + MGP_C3HHeJ_P0058775 Svs5 protein_coding protein_coding MGP_C3HHeJ_T0058776.1 MGP_C3HHeJ_G0026564.1 mouse_genomes_project 2 168053528 168054475 + MGP_C3HHeJ_P0058776 Svs5 protein_coding protein_coding MGP_C3HHeJ_T0004117.1 MGP_C3HHeJ_G0003631.1 mouse_genomes_project 2 184642487 184644077 + Gm17180 antisense antisense MGP_C3HHeJ_T0007170.1 MGP_C3HHeJ_G0005875.1 mouse_genomes_project 2 82932864 82959459 - Gm28675 lincRNA lincRNA MGP_C3HHeJ_T0001046.1 MGP_C3HHeJ_G0000983.1 mouse_genomes_project 2 37540146 37543626 - TEC TEC MGP_C3HHeJ_T0055382.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783494 84793874 + MGP_C3HHeJ_P0055382 Ssrp1 protein_coding protein_coding MGP_C3HHeJ_T0055383.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783711 84793871 + MGP_C3HHeJ_P0055383 Ssrp1 protein_coding protein_coding MGP_C3HHeJ_T0055384.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783713 84785534 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055385.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783715 84792537 + MGP_C3HHeJ_P0055385 Ssrp1 protein_coding protein_coding MGP_C3HHeJ_T0055386.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84783793 84786718 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055387.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84786374 84787285 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055388.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84787436 84789063 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055389.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84792015 84793483 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0055390.1 MGP_C3HHeJ_G0025650.1 mouse_genomes_project 2 84792119 84793050 + Ssrp1 protein_coding processed_transcript MGP_C3HHeJ_T0054183.1 MGP_C3HHeJ_G0025411.1 mouse_genomes_project 2 35138421 35139354 - MGP_C3HHeJ_P0054183 Olfr351 protein_coding protein_coding MGP_C3HHeJ_T0055578.1 MGP_C3HHeJ_G0025811.1 mouse_genomes_project 2 89320360 89321296 - MGP_C3HHeJ_P0055578 Olfr1224-ps1 protein_coding protein_coding MGP_C3HHeJ_T0007211.1 MGP_C3HHeJ_G0005909.1 mouse_genomes_project 2 116195414 116553616 - lincRNA lincRNA MGP_C3HHeJ_T0055586.1 MGP_C3HHeJ_G0025818.1 mouse_genomes_project 2 89475922 89476858 - MGP_C3HHeJ_P0055586 Olfr1232 protein_coding protein_coding MGP_C3HHeJ_T0013417.1 MGP_C3HHeJ_G0011521.1 mouse_genomes_project 2 57917477 57919161 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013498.1 MGP_C3HHeJ_G0011602.1 mouse_genomes_project 2 87169395 87170566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013367.1 MGP_C3HHeJ_G0011471.1 mouse_genomes_project 2 37930255 37931352 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056156.1 MGP_C3HHeJ_G0025932.1 mouse_genomes_project 2 104788399 104790028 + MGP_C3HHeJ_P0056156 Gm10912 protein_coding protein_coding MGP_C3HHeJ_T0101177.1 MGP_C3HHeJ_G0039326.1 mouse_genomes_project 2 132999029 132999511 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0054276.1 MGP_C3HHeJ_G0025439.1 mouse_genomes_project 2 37271007 37309668 + MGP_C3HHeJ_P0054276 Olfml2a protein_coding protein_coding MGP_C3HHeJ_T0001001.1 MGP_C3HHeJ_G0000938.1 mouse_genomes_project 2 8940850 8941271 + TEC TEC MGP_C3HHeJ_T0057859.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153790977 153801055 - Abhd12 protein_coding processed_transcript MGP_C3HHeJ_T0057860.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153790977 153863703 - MGP_C3HHeJ_P0057860 Abhd12 protein_coding protein_coding MGP_C3HHeJ_T0057861.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153791001 153863693 - MGP_C3HHeJ_P0057861 Abhd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057862.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153791600 153798207 - MGP_C3HHeJ_P0057862 Abhd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057863.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153795843 153863624 - Abhd12 protein_coding processed_transcript MGP_C3HHeJ_T0057864.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153801517 153809975 - Abhd12 protein_coding retained_intron MGP_C3HHeJ_T0057865.1 MGP_C3HHeJ_G0026352.1 mouse_genomes_project 2 153804814 153863609 - MGP_C3HHeJ_P0057865 Abhd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013578.1 MGP_C3HHeJ_G0011682.1 mouse_genomes_project 2 113337479 113338424 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055037.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73129824 73177933 - MGP_C3HHeJ_P0055037 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055038.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73129832 73296360 - MGP_C3HHeJ_P0055038 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055039.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73129832 73296360 - MGP_C3HHeJ_P0055039 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055040.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73132256 73236722 - MGP_C3HHeJ_P0055040 Chn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055041.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73144078 73173060 - MGP_C3HHeJ_P0055041 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0055042.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73144796 73296340 - MGP_C3HHeJ_P0055042 Chn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055043.1 MGP_C3HHeJ_G0025572.1 mouse_genomes_project 2 73196374 73296055 - MGP_C3HHeJ_P0055043 Chn1 protein_coding protein_coding MGP_C3HHeJ_T0053610.1 MGP_C3HHeJ_G0025314.1 mouse_genomes_project 2 28967729 28980045 - MGP_C3HHeJ_P0053610 BC005624 protein_coding protein_coding MGP_C3HHeJ_T0053611.1 MGP_C3HHeJ_G0025314.1 mouse_genomes_project 2 28973077 28978610 - BC005624 protein_coding retained_intron MGP_C3HHeJ_T0053612.1 MGP_C3HHeJ_G0025314.1 mouse_genomes_project 2 28979006 28980305 - BC005624 protein_coding retained_intron MGP_C3HHeJ_T0004099.1 MGP_C3HHeJ_G0003619.1 mouse_genomes_project 2 171977223 171978201 + Gm14236 antisense antisense MGP_C3HHeJ_T0013518.1 MGP_C3HHeJ_G0011622.1 mouse_genomes_project 2 92095087 92096348 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057712.1 MGP_C3HHeJ_G0026307.1 mouse_genomes_project 2 147266108 147274713 - MGP_C3HHeJ_P0057712 Rbbp9 protein_coding protein_coding MGP_C3HHeJ_T0057713.1 MGP_C3HHeJ_G0026307.1 mouse_genomes_project 2 147267664 147274634 - Rbbp9 protein_coding processed_transcript MGP_C3HHeJ_T0054202.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35661627 35713004 - MGP_C3HHeJ_P0054202 Rc3h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054203.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35663722 35712914 - MGP_C3HHeJ_P0054203 Rc3h2 protein_coding protein_coding MGP_C3HHeJ_T0054204.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35665349 35666061 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054205.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35666301 35669756 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054206.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35676425 35678661 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054207.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35685963 35688661 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0054208.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35699680 35704848 - Rc3h2 protein_coding processed_transcript MGP_C3HHeJ_T0054209.1 MGP_C3HHeJ_G0025426.1 mouse_genomes_project 2 35703644 35707123 - Rc3h2 protein_coding retained_intron MGP_C3HHeJ_T0003994.1 MGP_C3HHeJ_G0003539.1 mouse_genomes_project 2 120248316 120251359 + Inafm2 antisense antisense MGP_C3HHeJ_T0055455.1 MGP_C3HHeJ_G0025704.1 mouse_genomes_project 2 86499029 86500305 - MGP_C3HHeJ_P0055455 Olfr1085 protein_coding protein_coding MGP_C3HHeJ_T0013279.1 MGP_C3HHeJ_G0011383.1 mouse_genomes_project 2 8124031 8124452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056150.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751493 104785824 + MGP_C3HHeJ_P0056150 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0056151.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751598 104778601 + MGP_C3HHeJ_P0056151 Fbxo3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056152.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751610 104780108 + MGP_C3HHeJ_P0056152 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0056153.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751612 104785587 + MGP_C3HHeJ_P0056153 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0056154.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751614 104780075 + Fbxo3 protein_coding processed_transcript MGP_C3HHeJ_T0056155.1 MGP_C3HHeJ_G0025931.1 mouse_genomes_project 2 104751626 104780089 + MGP_C3HHeJ_P0056155 Fbxo3 protein_coding protein_coding MGP_C3HHeJ_T0054507.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116223 56259489 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0054508.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116266 56262354 + MGP_C3HHeJ_P0054508 Gpd2 protein_coding protein_coding MGP_C3HHeJ_T0054509.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116885 56262354 + MGP_C3HHeJ_P0054509 Gpd2 protein_coding protein_coding MGP_C3HHeJ_T0054510.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56116970 56262354 + MGP_C3HHeJ_P0054510 Gpd2 protein_coding protein_coding MGP_C3HHeJ_T0054511.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56122982 56189051 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0054512.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56145038 56148012 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0054513.1 MGP_C3HHeJ_G0025476.1 mouse_genomes_project 2 56147281 56148012 + Gpd2 protein_coding processed_transcript MGP_C3HHeJ_T0058175.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158024630 158310393 + MGP_C3HHeJ_P0058175 a protein_coding protein_coding MGP_C3HHeJ_T0058182.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158211617 158308325 + a protein_coding processed_transcript MGP_C3HHeJ_T0058183.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158211656 158313677 + MGP_C3HHeJ_P0058183 a protein_coding protein_coding MGP_C3HHeJ_T0058184.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158289443 158313298 + MGP_C3HHeJ_P0058184 a protein_coding protein_coding MGP_C3HHeJ_T0058185.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158289502 158313678 + MGP_C3HHeJ_P0058185 a protein_coding protein_coding MGP_C3HHeJ_T0058186.1 MGP_C3HHeJ_G0026444.1 mouse_genomes_project 2 158310280 158313677 + a protein_coding retained_intron MGP_C3HHeJ_T0055675.1 MGP_C3HHeJ_G0025855.1 mouse_genomes_project 2 91217113 91221752 + MGP_C3HHeJ_P0055675 C1qtnf4 protein_coding protein_coding MGP_C3HHeJ_T0101926.1 MGP_C3HHeJ_G0039891.1 mouse_genomes_project 2 124263206 124263482 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0053475.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210440 28226971 + MGP_C3HHeJ_P0053475 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053476.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210766 28226972 + MGP_C3HHeJ_P0053476 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053477.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210958 28226971 + MGP_C3HHeJ_P0053477 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053478.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28210972 28225865 + MGP_C3HHeJ_P0053478 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053479.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211056 28225044 + MGP_C3HHeJ_P0053479 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053480.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211086 28226960 + MGP_C3HHeJ_P0053480 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053481.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211088 28224325 + Phyhd1 protein_coding processed_transcript MGP_C3HHeJ_T0053482.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211093 28225913 + MGP_C3HHeJ_P0053482 Phyhd1 protein_coding protein_coding MGP_C3HHeJ_T0053483.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211100 28226921 + MGP_C3HHeJ_P0053483 Phyhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053484.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28211100 28226921 + MGP_C3HHeJ_P0053484 Phyhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053485.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28221801 28226963 + MGP_C3HHeJ_P0053485 Phyhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053486.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28224429 28226677 + Phyhd1 protein_coding retained_intron MGP_C3HHeJ_T0053487.1 MGP_C3HHeJ_G0025296.1 mouse_genomes_project 2 28224476 28225309 + Phyhd1 protein_coding retained_intron MGP_C3HHeJ_T0013404.1 MGP_C3HHeJ_G0011508.1 mouse_genomes_project 2 53214805 53215356 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013724.1 MGP_C3HHeJ_G0011828.1 mouse_genomes_project 2 175096940 175099064 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058115.1 MGP_C3HHeJ_G0026427.1 mouse_genomes_project 2 157374722 157404214 + MGP_C3HHeJ_P0058115 Bpifb1 protein_coding protein_coding MGP_C3HHeJ_T0058116.1 MGP_C3HHeJ_G0026427.1 mouse_genomes_project 2 157374727 157404187 + Bpifb1 protein_coding retained_intron MGP_C3HHeJ_T0058117.1 MGP_C3HHeJ_G0026427.1 mouse_genomes_project 2 157384270 157404188 + MGP_C3HHeJ_P0058117 Bpifb1 protein_coding protein_coding MGP_C3HHeJ_T0017536.1 MGP_C3HHeJ_G0015171.1 mouse_genomes_project 2 27643908 27646240 - processed_transcript processed_transcript MGP_C3HHeJ_T0003901.1 MGP_C3HHeJ_G0003479.1 mouse_genomes_project 2 51148717 51151054 + antisense antisense MGP_C3HHeJ_T0058424.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744612 159868519 + MGP_C3HHeJ_P0058424 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058425.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744751 159868519 + MGP_C3HHeJ_P0058425 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058426.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744755 159827035 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0058427.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744787 159847469 + MGP_C3HHeJ_P0058427 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058428.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744804 159868519 + MGP_C3HHeJ_P0058428 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058429.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159744815 159868519 + MGP_C3HHeJ_P0058429 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058430.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159800637 159824278 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0058431.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159800924 159868519 + MGP_C3HHeJ_P0058431 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058432.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159818465 159868519 + MGP_C3HHeJ_P0058432 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058433.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159818495 159868519 + MGP_C3HHeJ_P0058433 Epb41l1 protein_coding protein_coding MGP_C3HHeJ_T0058434.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159831002 159838722 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0058435.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159858947 159865324 + Epb41l1 protein_coding retained_intron MGP_C3HHeJ_T0058436.1 MGP_C3HHeJ_G0026482.1 mouse_genomes_project 2 159862701 159865664 + Epb41l1 protein_coding processed_transcript MGP_C3HHeJ_T0100437.1 MGP_C3HHeJ_G0038631.1 mouse_genomes_project 2 24658107 24658181 + Gm23969 snoRNA snoRNA MGP_C3HHeJ_T0058009.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156032188 156042601 - MGP_C3HHeJ_P0058009 Dusp15 protein_coding protein_coding MGP_C3HHeJ_T0058010.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156032213 156035748 - Dusp15 protein_coding retained_intron MGP_C3HHeJ_T0058011.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156036124 156042727 - MGP_C3HHeJ_P0058011 Dusp15 protein_coding protein_coding MGP_C3HHeJ_T0058012.1 MGP_C3HHeJ_G0026400.1 mouse_genomes_project 2 156036168 156042843 - MGP_C3HHeJ_P0058012 Dusp15 protein_coding protein_coding MGP_C3HHeJ_T0099210.1 MGP_C3HHeJ_G0037404.1 mouse_genomes_project 2 122765676 122765782 - Gm23858 snRNA snRNA MGP_C3HHeJ_T0056979.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581970 124592997 + MGP_C3HHeJ_P0056979 Bloc1s6 protein_coding protein_coding MGP_C3HHeJ_T0056980.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581980 124589501 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056981.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581986 124591620 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056982.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581994 124582624 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056983.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124581997 124589567 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0056984.1 MGP_C3HHeJ_G0026138.1 mouse_genomes_project 2 124582026 124590527 + Bloc1s6 protein_coding processed_transcript MGP_C3HHeJ_T0058035.1 MGP_C3HHeJ_G0026405.1 mouse_genomes_project 2 156204482 156248851 + MGP_C3HHeJ_P0058035 Hck protein_coding protein_coding MGP_C3HHeJ_T0058036.1 MGP_C3HHeJ_G0026405.1 mouse_genomes_project 2 156204482 156248853 + MGP_C3HHeJ_P0058036 Hck protein_coding protein_coding MGP_C3HHeJ_T0013553.1 MGP_C3HHeJ_G0011657.1 mouse_genomes_project 2 105354529 105354717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101878.1 MGP_C3HHeJ_G0039843.1 mouse_genomes_project 2 34597936 34598875 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010278.1 MGP_C3HHeJ_G0008411.1 mouse_genomes_project 2 7716650 7716744 + Mir466n miRNA miRNA MGP_C3HHeJ_T0013463.1 MGP_C3HHeJ_G0011567.1 mouse_genomes_project 2 75200049 75200794 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057426.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133400998 133412535 + MGP_C3HHeJ_P0057426 Cdc25b protein_coding protein_coding MGP_C3HHeJ_T0057427.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133401007 133412537 + MGP_C3HHeJ_P0057427 Cdc25b protein_coding protein_coding MGP_C3HHeJ_T0057428.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133402207 133405964 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057429.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133405395 133406148 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057430.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133405788 133407438 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057431.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133405858 133407325 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0057432.1 MGP_C3HHeJ_G0026245.1 mouse_genomes_project 2 133406919 133408452 + Cdc25b protein_coding retained_intron MGP_C3HHeJ_T0013655.1 MGP_C3HHeJ_G0011759.1 mouse_genomes_project 2 150088632 150089114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013713.1 MGP_C3HHeJ_G0011817.1 mouse_genomes_project 2 169788445 169789007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100469.1 MGP_C3HHeJ_G0038663.1 mouse_genomes_project 2 95284367 95284499 - Gm26396 snoRNA snoRNA MGP_C3HHeJ_T0057318.1 MGP_C3HHeJ_G0026219.1 mouse_genomes_project 2 132565051 132571852 - MGP_C3HHeJ_P0057318 Cpxm1 protein_coding protein_coding MGP_C3HHeJ_T0057319.1 MGP_C3HHeJ_G0026219.1 mouse_genomes_project 2 132565052 132567553 - Cpxm1 protein_coding retained_intron MGP_C3HHeJ_T0052201.1 MGP_C3HHeJ_G0025073.1 mouse_genomes_project 2 7358365 7461220 + MGP_C3HHeJ_P0052201 Itih5 protein_coding protein_coding MGP_C3HHeJ_T0052705.1 MGP_C3HHeJ_G0025154.1 mouse_genomes_project 2 22731567 22741042 - MGP_C3HHeJ_P0052705 Noxa1 protein_coding protein_coding MGP_C3HHeJ_T0052706.1 MGP_C3HHeJ_G0025154.1 mouse_genomes_project 2 22731567 22741024 - MGP_C3HHeJ_P0052706 Noxa1 protein_coding protein_coding MGP_C3HHeJ_T0010349.1 MGP_C3HHeJ_G0008482.1 mouse_genomes_project 2 93887674 93887753 - Mir7001 miRNA miRNA MGP_C3HHeJ_T0010254.1 MGP_C3HHeJ_G0008387.1 mouse_genomes_project 2 7690762 7690881 + Mir669e miRNA miRNA MGP_C3HHeJ_T0055484.1 MGP_C3HHeJ_G0025732.1 mouse_genomes_project 2 87423436 87424381 + MGP_C3HHeJ_P0055484 Olfr1121 protein_coding protein_coding MGP_C3HHeJ_T0013312.1 MGP_C3HHeJ_G0011416.1 mouse_genomes_project 2 18814818 18815154 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001044.1 MGP_C3HHeJ_G0000981.1 mouse_genomes_project 2 37186667 37188626 - TEC TEC MGP_C3HHeJ_T0001005.1 MGP_C3HHeJ_G0000942.1 mouse_genomes_project 2 10322833 10326069 + TEC TEC MGP_C3HHeJ_T0013423.1 MGP_C3HHeJ_G0011527.1 mouse_genomes_project 2 59084408 59085848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056673.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121942628 121993595 - MGP_C3HHeJ_P0056673 Tmem87a protein_coding protein_coding MGP_C3HHeJ_T0056674.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121942628 121993615 - MGP_C3HHeJ_P0056674 Tmem87a protein_coding protein_coding MGP_C3HHeJ_T0056675.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121942632 121993621 - Tmem87a protein_coding processed_transcript MGP_C3HHeJ_T0056676.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121943267 121993603 - Tmem87a protein_coding processed_transcript MGP_C3HHeJ_T0056677.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121951156 121993604 - MGP_C3HHeJ_P0056677 Tmem87a protein_coding protein_coding MGP_C3HHeJ_T0056678.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121968511 121993639 - Tmem87a protein_coding processed_transcript MGP_C3HHeJ_T0056679.1 MGP_C3HHeJ_G0026085.1 mouse_genomes_project 2 121969025 121993607 - Tmem87a protein_coding retained_intron MGP_C3HHeJ_T0101936.1 MGP_C3HHeJ_G0039901.1 mouse_genomes_project 2 181517363 181519932 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001011.1 MGP_C3HHeJ_G0000948.1 mouse_genomes_project 2 10573520 10575209 - TEC TEC MGP_C3HHeJ_T0057686.1 MGP_C3HHeJ_G0026301.1 mouse_genomes_project 2 146969480 146978236 + MGP_C3HHeJ_P0057686 Mgme1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054666.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61341546 61426683 - MGP_C3HHeJ_P0054666 Dpp4 protein_coding protein_coding MGP_C3HHeJ_T0054667.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61346939 61358328 - Dpp4 protein_coding retained_intron MGP_C3HHeJ_T0054668.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61365341 61370794 - Dpp4 protein_coding processed_transcript MGP_C3HHeJ_T0054669.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61378659 61392194 - Dpp4 protein_coding retained_intron MGP_C3HHeJ_T0054670.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61388198 61426473 - Dpp4 protein_coding retained_intron MGP_C3HHeJ_T0054671.1 MGP_C3HHeJ_G0025501.1 mouse_genomes_project 2 61422153 61426311 - Dpp4 protein_coding processed_transcript MGP_C3HHeJ_T0057093.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128830851 128919789 - MGP_C3HHeJ_P0057093 Trpm7 protein_coding protein_coding MGP_C3HHeJ_T0057094.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128830858 128834815 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057095.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128832103 128841883 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057096.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128832174 128837103 - MGP_C3HHeJ_P0057096 Trpm7 protein_coding protein_coding MGP_C3HHeJ_T0057097.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128836254 128837086 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057098.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128836539 128844315 - Trpm7 protein_coding processed_transcript MGP_C3HHeJ_T0057099.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128855568 128860837 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057100.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128873110 128877741 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057101.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128874708 128919999 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0057102.1 MGP_C3HHeJ_G0026164.1 mouse_genomes_project 2 128874711 128878080 - Trpm7 protein_coding retained_intron MGP_C3HHeJ_T0053176.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24942829 24989482 - Sardh protein_coding processed_transcript MGP_C3HHeJ_T0053177.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24942829 25004047 - MGP_C3HHeJ_P0053177 Sardh protein_coding protein_coding MGP_C3HHeJ_T0053178.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24943633 24948374 - Sardh protein_coding retained_intron MGP_C3HHeJ_T0053179.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24943818 24966045 - Sardh protein_coding processed_transcript MGP_C3HHeJ_T0053180.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24952821 24975789 - Sardh protein_coding retained_intron MGP_C3HHeJ_T0053181.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24967162 24971739 - Sardh protein_coding processed_transcript MGP_C3HHeJ_T0053182.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24967198 24981989 - Sardh protein_coding retained_intron MGP_C3HHeJ_T0053183.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24998253 25003629 - MGP_C3HHeJ_P0053183 Sardh protein_coding protein_coding MGP_C3HHeJ_T0053184.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 24998271 25005118 - MGP_C3HHeJ_P0053184 Sardh protein_coding protein_coding MGP_C3HHeJ_T0053185.1 MGP_C3HHeJ_G0025246.1 mouse_genomes_project 2 25001070 25004195 - MGP_C3HHeJ_P0053185 Sardh protein_coding protein_coding MGP_C3HHeJ_T0007295.1 MGP_C3HHeJ_G0005976.1 mouse_genomes_project 2 164795089 164795681 - Gm14242 lincRNA lincRNA MGP_C3HHeJ_T0055100.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75221756 75228568 + MGP_C3HHeJ_P0055100 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0055101.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75221756 75228568 + MGP_C3HHeJ_P0055101 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0055102.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75221934 75228664 + MGP_C3HHeJ_P0055102 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0055103.1 MGP_C3HHeJ_G0025588.1 mouse_genomes_project 2 75225620 75228664 + MGP_C3HHeJ_P0055103 Hnrnpa3 protein_coding protein_coding MGP_C3HHeJ_T0059227.1 MGP_C3HHeJ_G0026675.1 mouse_genomes_project 2 177825764 177832561 + MGP_C3HHeJ_P0059227 1700021F07Rik protein_coding protein_coding MGP_C3HHeJ_T0055461.1 MGP_C3HHeJ_G0025710.1 mouse_genomes_project 2 86785113 86786120 - MGP_C3HHeJ_P0055461 protein_coding protein_coding MGP_C3HHeJ_T0056903.1 MGP_C3HHeJ_G0026117.1 mouse_genomes_project 2 123175344 123212922 + MGP_C3HHeJ_P0056903 Wdr76 protein_coding protein_coding MGP_C3HHeJ_T0056904.1 MGP_C3HHeJ_G0026117.1 mouse_genomes_project 2 123175369 123212475 + MGP_C3HHeJ_P0056904 Wdr76 protein_coding protein_coding MGP_C3HHeJ_T0011411.1 MGP_C3HHeJ_G0009544.1 mouse_genomes_project 2 105912118 105912412 - Gm27538 misc_RNA misc_RNA MGP_C3HHeJ_T0004047.1 MGP_C3HHeJ_G0003577.1 mouse_genomes_project 2 149992887 150145901 + antisense antisense MGP_C3HHeJ_T0101877.1 MGP_C3HHeJ_G0039842.1 mouse_genomes_project 2 34576152 34577091 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055858.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331708 92380615 - MGP_C3HHeJ_P0055858 Dgkz protein_coding protein_coding MGP_C3HHeJ_T0055859.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331708 92368771 - MGP_C3HHeJ_P0055859 Dgkz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055860.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331710 92366841 - MGP_C3HHeJ_P0055860 Dgkz protein_coding protein_coding MGP_C3HHeJ_T0055861.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331711 92349312 - MGP_C3HHeJ_P0055861 Dgkz protein_coding protein_coding MGP_C3HHeJ_T0055862.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92331711 92368784 - MGP_C3HHeJ_P0055862 Dgkz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055863.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332120 92332817 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055864.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332268 92333466 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055865.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332326 92334384 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055866.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332339 92333396 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055867.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92332665 92334485 - Dgkz protein_coding retained_intron MGP_C3HHeJ_T0055868.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92334791 92336913 - Dgkz protein_coding processed_transcript MGP_C3HHeJ_T0055869.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92339642 92349196 - MGP_C3HHeJ_P0055869 Dgkz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055870.1 MGP_C3HHeJ_G0025881.1 mouse_genomes_project 2 92339893 92344142 - Dgkz protein_coding processed_transcript MGP_C3HHeJ_T0059484.1 MGP_C3HHeJ_G0026734.1 mouse_genomes_project 2 185913031 185921067 - MGP_C3HHeJ_P0059484 Stmn3 protein_coding protein_coding MGP_C3HHeJ_T0098101.1 MGP_C3HHeJ_G0036313.1 mouse_genomes_project 2 60810230 60810347 + Gm25966 rRNA rRNA MGP_C3HHeJ_T0058739.1 MGP_C3HHeJ_G0026546.1 mouse_genomes_project 2 167417617 167441269 - MGP_C3HHeJ_P0058739 Ada protein_coding protein_coding MGP_C3HHeJ_T0058740.1 MGP_C3HHeJ_G0026546.1 mouse_genomes_project 2 167421046 167421898 - Ada protein_coding processed_transcript MGP_C3HHeJ_T0053489.1 MGP_C3HHeJ_G0025298.1 mouse_genomes_project 2 28229059 28231163 - MGP_C3HHeJ_P0053489 Dolk protein_coding protein_coding MGP_C3HHeJ_T0013339.1 MGP_C3HHeJ_G0011443.1 mouse_genomes_project 2 30502056 30502658 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054771.1 MGP_C3HHeJ_G0025519.1 mouse_genomes_project 2 66660348 66660702 - MGP_C3HHeJ_P0054771 Gm26727 protein_coding protein_coding MGP_C3HHeJ_T0013599.1 MGP_C3HHeJ_G0011703.1 mouse_genomes_project 2 129656828 129657678 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052272.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9037435 9038419 + MGP_C3HHeJ_P0052272 Ankrd16 protein_coding protein_coding MGP_C3HHeJ_T0052273.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038050 9049602 + MGP_C3HHeJ_P0052273 Ankrd16 protein_coding protein_coding MGP_C3HHeJ_T0052274.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038083 9049606 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052275.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038086 9049580 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052276.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038123 9049602 + MGP_C3HHeJ_P0052276 Ankrd16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052277.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9038131 9040824 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052278.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9039444 9049045 + MGP_C3HHeJ_P0052278 Ankrd16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052279.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9042848 9049597 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052280.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9042868 9049191 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052281.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9043764 9049578 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052282.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9043852 9049573 + MGP_C3HHeJ_P0052282 Ankrd16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052283.1 MGP_C3HHeJ_G0025082.1 mouse_genomes_project 2 9045717 9049399 + Ankrd16 protein_coding retained_intron MGP_C3HHeJ_T0052406.1 MGP_C3HHeJ_G0025103.1 mouse_genomes_project 2 15438545 15439087 - MGP_C3HHeJ_P0052406 H2afb1 protein_coding protein_coding MGP_C3HHeJ_T0052188.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7252955 7278742 - MGP_C3HHeJ_P0052188 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052189.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7252969 7278825 - MGP_C3HHeJ_P0052189 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052190.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7252969 7278759 - MGP_C3HHeJ_P0052190 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052191.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7256531 7278797 - MGP_C3HHeJ_P0052191 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052192.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7261673 7278174 - MGP_C3HHeJ_P0052192 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052193.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7261817 7278491 - MGP_C3HHeJ_P0052193 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0052194.1 MGP_C3HHeJ_G0025070.1 mouse_genomes_project 2 7262499 7278370 - MGP_C3HHeJ_P0052194 Atp5c1 protein_coding protein_coding MGP_C3HHeJ_T0100466.1 MGP_C3HHeJ_G0038660.1 mouse_genomes_project 2 85197008 85197152 + Gm23716 snoRNA snoRNA MGP_C3HHeJ_T0053864.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749428 30785802 + MGP_C3HHeJ_P0053864 Eng protein_coding protein_coding MGP_C3HHeJ_T0053865.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749428 30786342 + MGP_C3HHeJ_P0053865 Eng protein_coding protein_coding MGP_C3HHeJ_T0053866.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749455 30786353 + MGP_C3HHeJ_P0053866 Eng protein_coding protein_coding MGP_C3HHeJ_T0053867.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30749826 30753201 + Eng protein_coding processed_transcript MGP_C3HHeJ_T0053868.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30776420 30777323 + Eng protein_coding retained_intron MGP_C3HHeJ_T0053869.1 MGP_C3HHeJ_G0025350.1 mouse_genomes_project 2 30776943 30784939 + MGP_C3HHeJ_P0053869 Eng protein_coding protein_coding MGP_C3HHeJ_T0100508.1 MGP_C3HHeJ_G0038702.1 mouse_genomes_project 2 162651664 162651796 + Gm25090 snoRNA snoRNA MGP_C3HHeJ_T0007272.1 MGP_C3HHeJ_G0005957.1 mouse_genomes_project 2 152627432 152682584 - Gm14133 lincRNA lincRNA MGP_C3HHeJ_T0007273.1 MGP_C3HHeJ_G0005957.1 mouse_genomes_project 2 152637358 152682626 - Gm14133 lincRNA lincRNA MGP_C3HHeJ_T0051998.1 MGP_C3HHeJ_G0025037.1 mouse_genomes_project 2 302319 311010 + MGP_C3HHeJ_P0051998 Acbd7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051999.1 MGP_C3HHeJ_G0025037.1 mouse_genomes_project 2 306406 311232 + MGP_C3HHeJ_P0051999 Acbd7 protein_coding protein_coding MGP_C3HHeJ_T0056090.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103988103 104027959 - MGP_C3HHeJ_P0056090 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056091.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103988695 104027847 - MGP_C3HHeJ_P0056091 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056092.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103991181 104008470 - MGP_C3HHeJ_P0056092 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056093.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103991378 103998939 - Ehf protein_coding retained_intron MGP_C3HHeJ_T0056094.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103991746 104024246 - MGP_C3HHeJ_P0056094 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056095.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 103998790 104015647 - MGP_C3HHeJ_P0056095 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056096.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 104001480 104027601 - MGP_C3HHeJ_P0056096 Ehf protein_coding protein_coding MGP_C3HHeJ_T0056097.1 MGP_C3HHeJ_G0025923.1 mouse_genomes_project 2 104003783 104027848 - Ehf protein_coding retained_intron MGP_C3HHeJ_T0013377.1 MGP_C3HHeJ_G0011481.1 mouse_genomes_project 2 44189374 44189787 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001035.1 MGP_C3HHeJ_G0000972.1 mouse_genomes_project 2 34106962 34109950 + TEC TEC MGP_C3HHeJ_T0057752.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691074 148722103 + MGP_C3HHeJ_P0057752 protein_coding protein_coding MGP_C3HHeJ_T0057753.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691074 148797506 + MGP_C3HHeJ_P0057753 protein_coding protein_coding MGP_C3HHeJ_T0057754.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691095 148724077 + MGP_C3HHeJ_P0057754 protein_coding protein_coding MGP_C3HHeJ_T0057755.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691095 148721331 + MGP_C3HHeJ_P0057755 protein_coding protein_coding MGP_C3HHeJ_T0057756.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691098 148721186 + MGP_C3HHeJ_P0057756 protein_coding protein_coding MGP_C3HHeJ_T0057757.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691104 148966620 + MGP_C3HHeJ_P0057757 protein_coding protein_coding MGP_C3HHeJ_T0057758.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148691106 148711501 + MGP_C3HHeJ_P0057758 protein_coding protein_coding MGP_C3HHeJ_T0057759.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148795931 148852448 + protein_coding processed_transcript MGP_C3HHeJ_T0057760.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148799749 148886031 + protein_coding retained_intron MGP_C3HHeJ_T0057761.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148799881 148886162 + MGP_C3HHeJ_P0057761 protein_coding protein_coding MGP_C3HHeJ_T0057762.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148801705 148966616 + protein_coding processed_transcript MGP_C3HHeJ_T0057763.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148909192 148966539 + protein_coding processed_transcript MGP_C3HHeJ_T0057764.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148965843 148966616 + protein_coding processed_transcript MGP_C3HHeJ_T0057765.1 MGP_C3HHeJ_G0026316.1 mouse_genomes_project 2 148966191 148966374 + MGP_C3HHeJ_P0057765 protein_coding protein_coding MGP_C3HHeJ_T0013543.1 MGP_C3HHeJ_G0011647.1 mouse_genomes_project 2 102900023 102900992 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054186.1 MGP_C3HHeJ_G0025414.1 mouse_genomes_project 2 35187901 35188855 + MGP_C3HHeJ_P0054186 Olfr354 protein_coding protein_coding MGP_C3HHeJ_T0058912.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829015 168837123 + MGP_C3HHeJ_P0058912 Cd40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058913.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829015 168850285 + MGP_C3HHeJ_P0058913 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058914.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829024 168848990 + MGP_C3HHeJ_P0058914 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058915.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829068 168848081 + MGP_C3HHeJ_P0058915 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058916.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829069 168837180 + MGP_C3HHeJ_P0058916 Cd40 protein_coding protein_coding MGP_C3HHeJ_T0058917.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168829092 168848336 + MGP_C3HHeJ_P0058917 Cd40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058918.1 MGP_C3HHeJ_G0026604.1 mouse_genomes_project 2 168837075 168841103 + Cd40 protein_coding retained_intron MGP_C3HHeJ_T0010404.1 MGP_C3HHeJ_G0008537.1 mouse_genomes_project 2 178594769 178594848 - Mir296 miRNA miRNA MGP_C3HHeJ_T0099195.1 MGP_C3HHeJ_G0037389.1 mouse_genomes_project 2 70849093 70849194 - Gm23166 snRNA snRNA MGP_C3HHeJ_T0003835.1 MGP_C3HHeJ_G0003428.1 mouse_genomes_project 2 16941672 16944552 - Gm13344 antisense antisense MGP_C3HHeJ_T0055974.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94317659 94335301 - MGP_C3HHeJ_P0055974 Accs protein_coding protein_coding MGP_C3HHeJ_T0055975.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94319641 94335045 - MGP_C3HHeJ_P0055975 Accs protein_coding protein_coding MGP_C3HHeJ_T0055976.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94319641 94335165 - MGP_C3HHeJ_P0055976 Accs protein_coding protein_coding MGP_C3HHeJ_T0055977.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94320191 94323559 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055978.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94321222 94335303 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055979.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94322214 94333306 - MGP_C3HHeJ_P0055979 Accs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055980.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94323392 94327693 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055981.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94326704 94327806 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055982.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94327991 94335182 - MGP_C3HHeJ_P0055982 Accs protein_coding protein_coding MGP_C3HHeJ_T0055983.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94328220 94335299 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055984.1 MGP_C3HHeJ_G0025900.1 mouse_genomes_project 2 94328231 94335299 - Accs protein_coding retained_intron MGP_C3HHeJ_T0055075.1 MGP_C3HHeJ_G0025576.1 mouse_genomes_project 2 74175290 74181980 - MGP_C3HHeJ_P0055075 Evx2 protein_coding protein_coding MGP_C3HHeJ_T0055076.1 MGP_C3HHeJ_G0025576.1 mouse_genomes_project 2 74178045 74181842 - MGP_C3HHeJ_P0055076 Evx2 protein_coding protein_coding MGP_C3HHeJ_T0010287.1 MGP_C3HHeJ_G0008420.1 mouse_genomes_project 2 7721046 7721171 + Mir669h miRNA miRNA MGP_C3HHeJ_T0100484.1 MGP_C3HHeJ_G0038678.1 mouse_genomes_project 2 132449288 132449356 + Snord110 snoRNA snoRNA MGP_C3HHeJ_T0059370.1 MGP_C3HHeJ_G0026711.1 mouse_genomes_project 2 185054901 185116033 + MGP_C3HHeJ_P0059370 Ntsr1 protein_coding protein_coding MGP_C3HHeJ_T0059371.1 MGP_C3HHeJ_G0026711.1 mouse_genomes_project 2 185055152 185115272 + MGP_C3HHeJ_P0059371 Ntsr1 protein_coding protein_coding MGP_C3HHeJ_T0101879.1 MGP_C3HHeJ_G0039844.1 mouse_genomes_project 2 34611508 34611961 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058158.1 MGP_C3HHeJ_G0026440.1 mouse_genomes_project 2 157830745 157867446 + MGP_C3HHeJ_P0058158 Zfp341 protein_coding protein_coding MGP_C3HHeJ_T0058159.1 MGP_C3HHeJ_G0026440.1 mouse_genomes_project 2 157830804 157867403 + MGP_C3HHeJ_P0058159 Zfp341 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058160.1 MGP_C3HHeJ_G0026440.1 mouse_genomes_project 2 157830818 157867403 + MGP_C3HHeJ_P0058160 Zfp341 protein_coding protein_coding MGP_C3HHeJ_T0057926.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155019960 155030780 - MGP_C3HHeJ_P0057926 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0057927.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155019960 155024498 - MGP_C3HHeJ_P0057927 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0057928.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155019960 155024529 - MGP_C3HHeJ_P0057928 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0057929.1 MGP_C3HHeJ_G0026366.1 mouse_genomes_project 2 155020299 155023957 - MGP_C3HHeJ_P0057929 Fam110a protein_coding protein_coding MGP_C3HHeJ_T0055525.1 MGP_C3HHeJ_G0025763.1 mouse_genomes_project 2 88056717 88057656 - MGP_C3HHeJ_P0055525 Olfr1157 protein_coding protein_coding MGP_C3HHeJ_T0100453.1 MGP_C3HHeJ_G0038647.1 mouse_genomes_project 2 48054619 48054740 - Gm25215 snoRNA snoRNA MGP_C3HHeJ_T0054429.1 MGP_C3HHeJ_G0025459.1 mouse_genomes_project 2 49823387 49841886 - MGP_C3HHeJ_P0054429 Rnd3 protein_coding protein_coding MGP_C3HHeJ_T0054430.1 MGP_C3HHeJ_G0025459.1 mouse_genomes_project 2 49830048 49842100 - Rnd3 protein_coding retained_intron MGP_C3HHeJ_T0099200.1 MGP_C3HHeJ_G0037394.1 mouse_genomes_project 2 80295515 80295618 + Gm24461 snRNA snRNA MGP_C3HHeJ_T0099172.1 MGP_C3HHeJ_G0037366.1 mouse_genomes_project 2 1372344 1372451 - Gm23691 snRNA snRNA MGP_C3HHeJ_T0099216.1 MGP_C3HHeJ_G0037410.1 mouse_genomes_project 2 134993758 134993861 + Gm22245 snRNA snRNA MGP_C3HHeJ_T0055459.1 MGP_C3HHeJ_G0025708.1 mouse_genomes_project 2 86736915 86737857 - MGP_C3HHeJ_P0055459 Olfr1090 protein_coding protein_coding MGP_C3HHeJ_T0054250.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36653693 36668217 + Lhx2 protein_coding retained_intron MGP_C3HHeJ_T0054251.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36655301 36669349 + MGP_C3HHeJ_P0054251 Lhx2 protein_coding protein_coding MGP_C3HHeJ_T0054252.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36666291 36669155 + MGP_C3HHeJ_P0054252 Lhx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054253.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36666297 36685039 + MGP_C3HHeJ_P0054253 Lhx2 protein_coding protein_coding MGP_C3HHeJ_T0054254.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36667055 36669097 + MGP_C3HHeJ_P0054254 Lhx2 protein_coding protein_coding MGP_C3HHeJ_T0054255.1 MGP_C3HHeJ_G0025434.1 mouse_genomes_project 2 36668325 36674522 + Lhx2 protein_coding retained_intron MGP_C3HHeJ_T0007150.1 MGP_C3HHeJ_G0005859.1 mouse_genomes_project 2 73837451 73846226 - 4930441J16Rik lincRNA lincRNA MGP_C3HHeJ_T0052180.1 MGP_C3HHeJ_G0025067.1 mouse_genomes_project 2 7066474 7069144 + MGP_C3HHeJ_P0052180 4930412O13Rik protein_coding protein_coding MGP_C3HHeJ_T0052181.1 MGP_C3HHeJ_G0025067.1 mouse_genomes_project 2 7067858 7068558 + MGP_C3HHeJ_P0052181 4930412O13Rik protein_coding protein_coding MGP_C3HHeJ_T0007197.1 MGP_C3HHeJ_G0005896.1 mouse_genomes_project 2 104062569 104096623 - A930006I01Rik lincRNA lincRNA MGP_C3HHeJ_T0053059.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24198082 24243981 - MGP_C3HHeJ_P0053059 Notch1 protein_coding protein_coding MGP_C3HHeJ_T0053060.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24202397 24202927 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053061.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24207793 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053062.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206974 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053063.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206834 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053064.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206547 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053065.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24205650 24206343 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053066.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24208722 24209929 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053067.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24210004 24210678 - Notch1 protein_coding processed_transcript MGP_C3HHeJ_T0053068.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24211455 24256771 - MGP_C3HHeJ_P0053068 Notch1 protein_coding protein_coding MGP_C3HHeJ_T0053069.1 MGP_C3HHeJ_G0025224.1 mouse_genomes_project 2 24238313 24243983 - Notch1 protein_coding retained_intron MGP_C3HHeJ_T0013676.1 MGP_C3HHeJ_G0011780.1 mouse_genomes_project 2 156545353 156545635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001051.1 MGP_C3HHeJ_G0000988.1 mouse_genomes_project 2 68243780 68245273 + TEC TEC MGP_C3HHeJ_T0054691.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 61718583 62232566 - MGP_C3HHeJ_P0054691 Kcnh7 protein_coding protein_coding MGP_C3HHeJ_T0054692.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 61822341 62232575 - MGP_C3HHeJ_P0054692 Kcnh7 protein_coding protein_coding MGP_C3HHeJ_T0054693.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 61822427 62232458 - MGP_C3HHeJ_P0054693 Kcnh7 protein_coding protein_coding MGP_C3HHeJ_T0054694.1 MGP_C3HHeJ_G0025506.1 mouse_genomes_project 2 62229756 62232550 - Kcnh7 protein_coding processed_transcript MGP_C3HHeJ_T0013305.1 MGP_C3HHeJ_G0011409.1 mouse_genomes_project 2 16263549 16264330 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055425.1 MGP_C3HHeJ_G0025676.1 mouse_genomes_project 2 85717257 85718196 + MGP_C3HHeJ_P0055425 Olfr1025-ps1 protein_coding protein_coding MGP_C3HHeJ_T0055426.1 MGP_C3HHeJ_G0025676.1 mouse_genomes_project 2 85717257 85718178 + MGP_C3HHeJ_P0055426 Olfr1025-ps1 protein_coding protein_coding MGP_C3HHeJ_T0055536.1 MGP_C3HHeJ_G0025773.1 mouse_genomes_project 2 88345317 88346504 - MGP_C3HHeJ_P0055536 Olfr1167 protein_coding protein_coding MGP_C3HHeJ_T0059177.1 MGP_C3HHeJ_G0026655.1 mouse_genomes_project 2 174698506 174720614 - MGP_C3HHeJ_P0059177 4930470P17Rik protein_coding protein_coding MGP_C3HHeJ_T0007353.1 MGP_C3HHeJ_G0006027.1 mouse_genomes_project 2 185436965 185438355 + Gm14339 lincRNA lincRNA MGP_C3HHeJ_T0003980.1 MGP_C3HHeJ_G0003530.1 mouse_genomes_project 2 111002512 111024548 - Ccdc34os antisense antisense MGP_C3HHeJ_T0003981.1 MGP_C3HHeJ_G0003530.1 mouse_genomes_project 2 111002513 111024551 - Ccdc34os antisense antisense MGP_C3HHeJ_T0052868.1 MGP_C3HHeJ_G0025184.1 mouse_genomes_project 2 23172046 23175113 - MGP_C3HHeJ_P0052868 Lcn12 protein_coding protein_coding MGP_C3HHeJ_T0052869.1 MGP_C3HHeJ_G0025184.1 mouse_genomes_project 2 23172048 23174634 - MGP_C3HHeJ_P0052869 Lcn12 protein_coding protein_coding MGP_C3HHeJ_T0007292.1 MGP_C3HHeJ_G0005973.1 mouse_genomes_project 2 163566958 163593047 + 9130015L21Rik lincRNA lincRNA MGP_C3HHeJ_T0013563.1 MGP_C3HHeJ_G0011667.1 mouse_genomes_project 2 109387034 109387662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007227.1 MGP_C3HHeJ_G0005920.1 mouse_genomes_project 2 119272466 119278633 - Gm13985 lincRNA lincRNA MGP_C3HHeJ_T0056139.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104688651 104711125 + MGP_C3HHeJ_P0056139 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056140.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104688660 104711953 + MGP_C3HHeJ_P0056140 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056142.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104699614 104711167 + MGP_C3HHeJ_P0056142 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056143.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700198 104711930 + MGP_C3HHeJ_P0056143 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056144.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700210 104706219 + MGP_C3HHeJ_P0056144 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056145.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700292 104711949 + MGP_C3HHeJ_P0056145 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056146.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104700313 104711914 + MGP_C3HHeJ_P0056146 Lmo2 protein_coding protein_coding MGP_C3HHeJ_T0056147.1 MGP_C3HHeJ_G0025929.1 mouse_genomes_project 2 104701248 104710991 + Lmo2 protein_coding processed_transcript MGP_C3HHeJ_T0003907.1 MGP_C3HHeJ_G0003483.1 mouse_genomes_project 2 59376590 59377645 + Gm13580 antisense antisense MGP_C3HHeJ_T0056767.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122603360 122636199 + MGP_C3HHeJ_P0056767 Tmem62 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056768.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122603642 122636191 + MGP_C3HHeJ_P0056768 Tmem62 protein_coding protein_coding MGP_C3HHeJ_T0056769.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122604013 122606885 + Tmem62 protein_coding retained_intron MGP_C3HHeJ_T0056770.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122607349 122617798 + Tmem62 protein_coding processed_transcript MGP_C3HHeJ_T0056771.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122610635 122613224 + Tmem62 protein_coding processed_transcript MGP_C3HHeJ_T0056772.1 MGP_C3HHeJ_G0026096.1 mouse_genomes_project 2 122623704 122635390 + Tmem62 protein_coding retained_intron MGP_C3HHeJ_T0058790.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168181111 168184929 + Sys1 protein_coding processed_transcript MGP_C3HHeJ_T0058791.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168181123 168189466 + MGP_C3HHeJ_P0058791 Sys1 protein_coding protein_coding MGP_C3HHeJ_T0058792.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168181235 168185301 + Sys1 protein_coding processed_transcript MGP_C3HHeJ_T0058794.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168184963 168189462 + MGP_C3HHeJ_P0058794 Sys1 protein_coding protein_coding MGP_C3HHeJ_T0058795.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168184992 168198412 + MGP_C3HHeJ_P0058795 Sys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058796.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168185045 168203454 + MGP_C3HHeJ_P0058796 Sys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058797.1 MGP_C3HHeJ_G0026569.1 mouse_genomes_project 2 168185301 168198412 + MGP_C3HHeJ_P0058797 Sys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010388.1 MGP_C3HHeJ_G0008521.1 mouse_genomes_project 2 161699381 161699443 - Mir7685 miRNA miRNA MGP_C3HHeJ_T0057308.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132453570 132458788 - MGP_C3HHeJ_P0057308 Idh3b protein_coding protein_coding MGP_C3HHeJ_T0057309.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132453573 132454802 - MGP_C3HHeJ_P0057309 Idh3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057310.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132456391 132458675 - Idh3b protein_coding retained_intron MGP_C3HHeJ_T0057311.1 MGP_C3HHeJ_G0026217.1 mouse_genomes_project 2 132457903 132458656 - Idh3b protein_coding retained_intron MGP_C3HHeJ_T0097895.1 MGP_C3HHeJ_G0036107.1 mouse_genomes_project 2 92318640 92319041 - pseudogene pseudogene MGP_C3HHeJ_T0054009.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32874840 32962906 - MGP_C3HHeJ_P0054009 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054010.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32876422 32962195 - MGP_C3HHeJ_P0054010 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054011.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32877231 32962300 - MGP_C3HHeJ_P0054011 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054012.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32877231 32962300 - MGP_C3HHeJ_P0054012 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054013.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32877729 32908944 - MGP_C3HHeJ_P0054013 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054014.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32878140 32882890 - MGP_C3HHeJ_P0054014 Gapvd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054015.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32894121 32909204 - Gapvd1 protein_coding processed_transcript MGP_C3HHeJ_T0054016.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32898849 32905683 - Gapvd1 protein_coding retained_intron MGP_C3HHeJ_T0054017.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32904453 32935874 - MGP_C3HHeJ_P0054017 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054018.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32904474 32935777 - MGP_C3HHeJ_P0054018 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0054019.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32908860 32917716 - MGP_C3HHeJ_P0054019 Gapvd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054020.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32908904 32917831 - Gapvd1 protein_coding processed_transcript MGP_C3HHeJ_T0054021.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32914725 32918227 - Gapvd1 protein_coding retained_intron MGP_C3HHeJ_T0054022.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32933244 32962164 - Gapvd1 protein_coding retained_intron MGP_C3HHeJ_T0054023.1 MGP_C3HHeJ_G0025373.1 mouse_genomes_project 2 32935847 32962150 - MGP_C3HHeJ_P0054023 Gapvd1 protein_coding protein_coding MGP_C3HHeJ_T0017690.1 MGP_C3HHeJ_G0015251.1 mouse_genomes_project 2 166297394 166305201 + 9430021M05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0004010.1 MGP_C3HHeJ_G0003552.1 mouse_genomes_project 2 131312097 131315628 - antisense antisense MGP_C3HHeJ_T0101905.1 MGP_C3HHeJ_G0039870.1 mouse_genomes_project 2 87593346 87594202 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007319.1 MGP_C3HHeJ_G0005996.1 mouse_genomes_project 2 171781732 171788571 - 1200007C13Rik lincRNA lincRNA MGP_C3HHeJ_T0052463.1 MGP_C3HHeJ_G0025113.1 mouse_genomes_project 2 16710252 16820026 + MGP_C3HHeJ_P0052463 Armc3 protein_coding protein_coding MGP_C3HHeJ_T0052464.1 MGP_C3HHeJ_G0025113.1 mouse_genomes_project 2 16710252 16820026 + MGP_C3HHeJ_P0052464 Armc3 protein_coding protein_coding MGP_C3HHeJ_T0003811.1 MGP_C3HHeJ_G0003410.1 mouse_genomes_project 2 736192 738384 - Gm13185 antisense antisense MGP_C3HHeJ_T0100501.1 MGP_C3HHeJ_G0038695.1 mouse_genomes_project 2 158942021 158942154 - Gm22334 snoRNA snoRNA MGP_C3HHeJ_T0059056.1 MGP_C3HHeJ_G0026628.1 mouse_genomes_project 2 171105601 171157989 - MGP_C3HHeJ_P0059056 Ptgis protein_coding protein_coding MGP_C3HHeJ_T0059057.1 MGP_C3HHeJ_G0026628.1 mouse_genomes_project 2 171117686 171158004 - MGP_C3HHeJ_P0059057 Ptgis protein_coding protein_coding MGP_C3HHeJ_T0059058.1 MGP_C3HHeJ_G0026628.1 mouse_genomes_project 2 171121301 171123196 - Ptgis protein_coding retained_intron MGP_C3HHeJ_T0007274.1 MGP_C3HHeJ_G0005958.1 mouse_genomes_project 2 153685845 153686483 - Gm28450 lincRNA lincRNA MGP_C3HHeJ_T0054113.1 MGP_C3HHeJ_G0025387.1 mouse_genomes_project 2 33584671 33598857 - MGP_C3HHeJ_P0054113 4930568D16Rik protein_coding protein_coding MGP_C3HHeJ_T0055854.1 MGP_C3HHeJ_G0025879.1 mouse_genomes_project 2 92325358 92326798 + MGP_C3HHeJ_P0055854 Chrm4 protein_coding protein_coding MGP_C3HHeJ_T0007277.1 MGP_C3HHeJ_G0005961.1 mouse_genomes_project 2 154875060 154878102 + Gm14155 lincRNA lincRNA MGP_C3HHeJ_T0055587.1 MGP_C3HHeJ_G0025819.1 mouse_genomes_project 2 89489960 89490878 - MGP_C3HHeJ_P0055587 Olfr1233 protein_coding protein_coding MGP_C3HHeJ_T0054256.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36831455 36915097 + MGP_C3HHeJ_P0054256 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054257.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36831480 36907967 + MGP_C3HHeJ_P0054257 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054258.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36831626 36906258 + MGP_C3HHeJ_P0054258 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054259.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36834393 36880669 + MGP_C3HHeJ_P0054259 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0054260.1 MGP_C3HHeJ_G0025435.1 mouse_genomes_project 2 36834438 36883749 + MGP_C3HHeJ_P0054260 Nek6 protein_coding protein_coding MGP_C3HHeJ_T0057512.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134596895 134645382 - MGP_C3HHeJ_P0057512 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057513.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134630292 134645380 - MGP_C3HHeJ_P0057513 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057514.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134630292 134645355 - MGP_C3HHeJ_P0057514 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057515.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134631144 134645402 - MGP_C3HHeJ_P0057515 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0057516.1 MGP_C3HHeJ_G0026261.1 mouse_genomes_project 2 134641524 134645376 - MGP_C3HHeJ_P0057516 Prokr2 protein_coding protein_coding MGP_C3HHeJ_T0013625.1 MGP_C3HHeJ_G0011729.1 mouse_genomes_project 2 137082191 137082504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052644.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554005 22565531 - MGP_C3HHeJ_P0052644 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052645.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554005 22565442 - MGP_C3HHeJ_P0052645 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052646.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554008 22565424 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052647.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554642 22565446 - MGP_C3HHeJ_P0052647 Arrdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052648.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554708 22565424 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052649.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554811 22565421 - MGP_C3HHeJ_P0052649 Arrdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052650.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554836 22555854 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052651.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22554976 22565453 - MGP_C3HHeJ_P0052651 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052652.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555325 22556557 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0052653.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555565 22565333 - MGP_C3HHeJ_P0052653 Arrdc1 protein_coding protein_coding MGP_C3HHeJ_T0052654.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555648 22556785 - Arrdc1 protein_coding processed_transcript MGP_C3HHeJ_T0052655.1 MGP_C3HHeJ_G0025147.1 mouse_genomes_project 2 22555938 22565467 - Arrdc1 protein_coding retained_intron MGP_C3HHeJ_T0013608.1 MGP_C3HHeJ_G0011712.1 mouse_genomes_project 2 132574712 132575545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017620.1 MGP_C3HHeJ_G0015220.1 mouse_genomes_project 2 119323771 119584180 - Gm13986 processed_transcript processed_transcript MGP_C3HHeJ_T0017621.1 MGP_C3HHeJ_G0015220.1 mouse_genomes_project 2 119542967 119584069 - Gm13986 processed_transcript processed_transcript MGP_C3HHeJ_T0052003.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381063 394663 - MGP_C3HHeJ_P0052003 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052004.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381063 391034 - MGP_C3HHeJ_P0052004 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052005.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381066 391056 - MGP_C3HHeJ_P0052005 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052006.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381067 391144 - MGP_C3HHeJ_P0052006 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052007.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381130 390596 - MGP_C3HHeJ_P0052007 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0052008.1 MGP_C3HHeJ_G0025039.1 mouse_genomes_project 2 381287 394609 - MGP_C3HHeJ_P0052008 Meig1 protein_coding protein_coding MGP_C3HHeJ_T0053101.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24634094 24638327 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053102.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24634391 24637889 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053103.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24634455 24645343 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053104.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24636150 24648797 - MGP_C3HHeJ_P0053104 Surf6 protein_coding protein_coding MGP_C3HHeJ_T0053105.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24636487 24648768 - MGP_C3HHeJ_P0053105 Surf6 protein_coding protein_coding MGP_C3HHeJ_T0053106.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24638390 24648708 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0053107.1 MGP_C3HHeJ_G0025231.1 mouse_genomes_project 2 24645011 24645686 - Surf6 protein_coding processed_transcript MGP_C3HHeJ_T0099176.1 MGP_C3HHeJ_G0037370.1 mouse_genomes_project 2 15615248 15615353 + Gm25147 snRNA snRNA MGP_C3HHeJ_T0007343.1 MGP_C3HHeJ_G0006017.1 mouse_genomes_project 2 176174575 176183180 - Gm14641 lincRNA lincRNA MGP_C3HHeJ_T0053675.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695633 29708236 + MGP_C3HHeJ_P0053675 Exosc2 protein_coding protein_coding MGP_C3HHeJ_T0053676.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695637 29707309 + Exosc2 protein_coding retained_intron MGP_C3HHeJ_T0053677.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695652 29706848 + MGP_C3HHeJ_P0053677 Exosc2 protein_coding protein_coding MGP_C3HHeJ_T0053678.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29695661 29704803 + MGP_C3HHeJ_P0053678 Exosc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053679.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29699557 29704876 + Exosc2 protein_coding processed_transcript MGP_C3HHeJ_T0053680.1 MGP_C3HHeJ_G0025323.1 mouse_genomes_project 2 29704626 29706841 + Exosc2 protein_coding retained_intron MGP_C3HHeJ_T0058825.1 MGP_C3HHeJ_G0026582.1 mouse_genomes_project 2 168401603 168402927 + MGP_C3HHeJ_P0058825 Wfdc10 protein_coding protein_coding MGP_C3HHeJ_T0000993.1 MGP_C3HHeJ_G0000930.1 mouse_genomes_project 2 8237455 8237566 - TEC TEC MGP_C3HHeJ_T0058972.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598617 169678935 - MGP_C3HHeJ_P0058972 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058973.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598617 169706812 - MGP_C3HHeJ_P0058973 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058974.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598620 169704305 - MGP_C3HHeJ_P0058974 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058975.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169598620 169704305 - MGP_C3HHeJ_P0058975 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058976.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169599828 169706833 - MGP_C3HHeJ_P0058976 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058977.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169599855 169706709 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058978.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169599855 169699816 - MGP_C3HHeJ_P0058978 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058979.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169600065 169706935 - MGP_C3HHeJ_P0058979 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058980.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169643580 169697164 - MGP_C3HHeJ_P0058980 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058981.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169643637 169719530 - MGP_C3HHeJ_P0058981 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058982.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169650819 169678935 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058983.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169659747 169721679 - MGP_C3HHeJ_P0058983 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058984.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169662490 169682760 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058985.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169665452 169672916 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058986.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169672826 169697987 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058987.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169672826 169697795 - MGP_C3HHeJ_P0058987 Zmynd8 protein_coding protein_coding MGP_C3HHeJ_T0058988.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169672827 169701938 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058989.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169694394 169706270 - Zmynd8 protein_coding processed_transcript MGP_C3HHeJ_T0058990.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169696257 169706299 - Zmynd8 protein_coding retained_intron MGP_C3HHeJ_T0058991.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169696535 169697577 - Zmynd8 protein_coding retained_intron MGP_C3HHeJ_T0058992.1 MGP_C3HHeJ_G0026617.1 mouse_genomes_project 2 169696643 169706812 - Zmynd8 protein_coding retained_intron MGP_C3HHeJ_T0013318.1 MGP_C3HHeJ_G0011422.1 mouse_genomes_project 2 20738277 20739918 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053625.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025413 29147775 - MGP_C3HHeJ_P0053625 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053626.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025414 29147981 - MGP_C3HHeJ_P0053626 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053627.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025414 29098594 - MGP_C3HHeJ_P0053627 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053628.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29025415 29147969 - MGP_C3HHeJ_P0053628 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053629.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29026002 29147930 - MGP_C3HHeJ_P0053629 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053630.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29027402 29098594 - Fnbp1 protein_coding processed_transcript MGP_C3HHeJ_T0053631.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29031915 29107896 - MGP_C3HHeJ_P0053631 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053632.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032220 29147775 - MGP_C3HHeJ_P0053632 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053633.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032231 29147775 - MGP_C3HHeJ_P0053633 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053634.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032231 29147775 - MGP_C3HHeJ_P0053634 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053635.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032231 29147775 - MGP_C3HHeJ_P0053635 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053636.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29032312 29054636 - MGP_C3HHeJ_P0053636 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053637.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29052495 29147912 - MGP_C3HHeJ_P0053637 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053638.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29054758 29147928 - MGP_C3HHeJ_P0053638 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053639.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29058135 29118826 - MGP_C3HHeJ_P0053639 Fnbp1 protein_coding protein_coding MGP_C3HHeJ_T0053640.1 MGP_C3HHeJ_G0025316.1 mouse_genomes_project 2 29098184 29107994 - Fnbp1 protein_coding processed_transcript MGP_C3HHeJ_T0013476.1 MGP_C3HHeJ_G0011580.1 mouse_genomes_project 2 79854730 79855553 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059470.1 MGP_C3HHeJ_G0026730.1 mouse_genomes_project 2 185805960 185813618 - MGP_C3HHeJ_P0059470 Srms protein_coding protein_coding MGP_C3HHeJ_T0056560.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120758162 120770441 + MGP_C3HHeJ_P0056560 Spint1 protein_coding protein_coding MGP_C3HHeJ_T0056561.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120758277 120770122 + MGP_C3HHeJ_P0056561 Spint1 protein_coding protein_coding MGP_C3HHeJ_T0056562.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120758353 120770454 + MGP_C3HHeJ_P0056562 Spint1 protein_coding protein_coding MGP_C3HHeJ_T0056563.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120767294 120769829 + Spint1 protein_coding retained_intron MGP_C3HHeJ_T0056564.1 MGP_C3HHeJ_G0026058.1 mouse_genomes_project 2 120769131 120769976 + Spint1 protein_coding retained_intron MGP_C3HHeJ_T0057347.1 MGP_C3HHeJ_G0026229.1 mouse_genomes_project 2 132770298 132814205 - MGP_C3HHeJ_P0057347 Ubox5 protein_coding protein_coding MGP_C3HHeJ_T0057348.1 MGP_C3HHeJ_G0026229.1 mouse_genomes_project 2 132780598 132814194 - MGP_C3HHeJ_P0057348 Ubox5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0017623.1 MGP_C3HHeJ_G0015222.1 mouse_genomes_project 2 120844624 120849597 - Gm14207 processed_transcript processed_transcript MGP_C3HHeJ_T0017624.1 MGP_C3HHeJ_G0015222.1 mouse_genomes_project 2 120844624 120848946 - Gm14207 processed_transcript processed_transcript MGP_C3HHeJ_T0017625.1 MGP_C3HHeJ_G0015222.1 mouse_genomes_project 2 120844779 120848967 - Gm14207 processed_transcript processed_transcript MGP_C3HHeJ_T0013310.1 MGP_C3HHeJ_G0011414.1 mouse_genomes_project 2 17494642 17496073 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007347.1 MGP_C3HHeJ_G0006021.1 mouse_genomes_project 2 179204891 179215124 + Gm14616 lincRNA lincRNA MGP_C3HHeJ_T0054636.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582453 60656889 + MGP_C3HHeJ_P0054636 Tank protein_coding protein_coding MGP_C3HHeJ_T0054637.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582454 60656889 + MGP_C3HHeJ_P0054637 Tank protein_coding protein_coding MGP_C3HHeJ_T0054638.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582479 60656808 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054639.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60582479 60646625 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054640.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597513 60656889 + MGP_C3HHeJ_P0054640 Tank protein_coding protein_coding MGP_C3HHeJ_T0054641.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597533 60656889 + MGP_C3HHeJ_P0054641 Tank protein_coding protein_coding MGP_C3HHeJ_T0054642.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597572 60654517 + MGP_C3HHeJ_P0054642 Tank protein_coding protein_coding MGP_C3HHeJ_T0054643.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597600 60619587 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054644.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60597601 60656808 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054645.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60630462 60648908 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0054646.1 MGP_C3HHeJ_G0025497.1 mouse_genomes_project 2 60646548 60652695 + Tank protein_coding processed_transcript MGP_C3HHeJ_T0053259.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26436290 26448814 - MGP_C3HHeJ_P0053259 Gfi1b protein_coding protein_coding MGP_C3HHeJ_T0053260.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26436295 26448777 - MGP_C3HHeJ_P0053260 Gfi1b protein_coding protein_coding MGP_C3HHeJ_T0053261.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26441615 26442237 - Gfi1b protein_coding processed_transcript MGP_C3HHeJ_T0053262.1 MGP_C3HHeJ_G0025262.1 mouse_genomes_project 2 26441622 26448814 - Gfi1b protein_coding processed_transcript MGP_C3HHeJ_T0001029.1 MGP_C3HHeJ_G0000966.1 mouse_genomes_project 2 30587579 30591734 + TEC TEC MGP_C3HHeJ_T0013645.1 MGP_C3HHeJ_G0011749.1 mouse_genomes_project 2 147068221 147068624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056198.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791447 105799151 - Eif3m protein_coding retained_intron MGP_C3HHeJ_T0056199.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791447 105808958 - MGP_C3HHeJ_P0056199 Eif3m protein_coding protein_coding MGP_C3HHeJ_T0056200.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791450 105798704 - MGP_C3HHeJ_P0056200 Eif3m protein_coding protein_coding MGP_C3HHeJ_T0056201.1 MGP_C3HHeJ_G0025946.1 mouse_genomes_project 2 105791480 105808921 - MGP_C3HHeJ_P0056201 Eif3m protein_coding protein_coding MGP_C3HHeJ_T0055624.1 MGP_C3HHeJ_G0025841.1 mouse_genomes_project 2 90232707 90236485 + MGP_C3HHeJ_P0055624 protein_coding protein_coding MGP_C3HHeJ_T0003995.1 MGP_C3HHeJ_G0003540.1 mouse_genomes_project 2 120336671 120340839 - Gm14091 antisense antisense MGP_C3HHeJ_T0007137.1 MGP_C3HHeJ_G0005849.1 mouse_genomes_project 2 71185907 71193490 + Gm13647 lincRNA lincRNA MGP_C3HHeJ_T0056364.1 MGP_C3HHeJ_G0026012.1 mouse_genomes_project 2 113720562 113891954 + MGP_C3HHeJ_P0056364 Aven protein_coding protein_coding MGP_C3HHeJ_T0056365.1 MGP_C3HHeJ_G0026012.1 mouse_genomes_project 2 113816620 113887343 + Aven protein_coding processed_transcript MGP_C3HHeJ_T0056366.1 MGP_C3HHeJ_G0026012.1 mouse_genomes_project 2 113816972 113888185 + MGP_C3HHeJ_P0056366 Aven protein_coding protein_coding MGP_C3HHeJ_T0100449.1 MGP_C3HHeJ_G0038643.1 mouse_genomes_project 2 41266231 41266363 + Gm24350 snoRNA snoRNA MGP_C3HHeJ_T0011417.1 MGP_C3HHeJ_G0009550.1 mouse_genomes_project 2 129558886 129559178 - Gm22613 misc_RNA misc_RNA MGP_C3HHeJ_T0000989.1 MGP_C3HHeJ_G0000926.1 mouse_genomes_project 2 3523757 3527189 + TEC TEC MGP_C3HHeJ_T0052111.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2880960 2907658 + MGP_C3HHeJ_P0052111 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052112.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2880975 2904521 + MGP_C3HHeJ_P0052112 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052113.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2881194 2893238 + Nudt5 protein_coding retained_intron MGP_C3HHeJ_T0052114.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2881194 2900266 + MGP_C3HHeJ_P0052114 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052115.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2881231 2898206 + MGP_C3HHeJ_P0052115 Nudt5 protein_coding protein_coding MGP_C3HHeJ_T0052116.1 MGP_C3HHeJ_G0025057.1 mouse_genomes_project 2 2884070 2897053 + Nudt5 protein_coding processed_transcript MGP_C3HHeJ_T0056339.1 MGP_C3HHeJ_G0025999.1 mouse_genomes_project 2 113273694 113274630 - MGP_C3HHeJ_P0056339 Olfr1313 protein_coding protein_coding MGP_C3HHeJ_T0057019.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110894 127188571 + MGP_C3HHeJ_P0057019 Slc12a1 protein_coding protein_coding MGP_C3HHeJ_T0057020.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110969 127125393 + Slc12a1 protein_coding retained_intron MGP_C3HHeJ_T0057021.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110989 127188568 + MGP_C3HHeJ_P0057021 Slc12a1 protein_coding protein_coding MGP_C3HHeJ_T0057022.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127110989 127188571 + MGP_C3HHeJ_P0057022 Slc12a1 protein_coding protein_coding MGP_C3HHeJ_T0057023.1 MGP_C3HHeJ_G0026145.1 mouse_genomes_project 2 127112318 127187431 + MGP_C3HHeJ_P0057023 Slc12a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010362.1 MGP_C3HHeJ_G0008495.1 mouse_genomes_project 2 118591882 118591982 + Mir674 miRNA miRNA MGP_C3HHeJ_T0007071.1 MGP_C3HHeJ_G0005796.1 mouse_genomes_project 2 22163159 22187888 - Gm13417 lincRNA lincRNA MGP_C3HHeJ_T0059581.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186206172 186232261 + MGP_C3HHeJ_P0059581 Prpf6 protein_coding protein_coding MGP_C3HHeJ_T0059585.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186216699 186271226 + MGP_C3HHeJ_P0059585 Prpf6 protein_coding protein_coding MGP_C3HHeJ_T0059586.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186216702 186271235 + MGP_C3HHeJ_P0059586 Prpf6 protein_coding protein_coding MGP_C3HHeJ_T0059587.1 MGP_C3HHeJ_G0026746.1 mouse_genomes_project 2 186216756 186257024 + Prpf6 protein_coding retained_intron MGP_C3HHeJ_T0010311.1 MGP_C3HHeJ_G0008444.1 mouse_genomes_project 2 29635401 29635465 + Mir6998 miRNA miRNA MGP_C3HHeJ_T0058464.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160212258 160222690 + MGP_C3HHeJ_P0058464 1110008F13Rik protein_coding protein_coding MGP_C3HHeJ_T0058465.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160212269 160222525 + 1110008F13Rik protein_coding processed_transcript MGP_C3HHeJ_T0058466.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160212275 160216118 + 1110008F13Rik protein_coding retained_intron MGP_C3HHeJ_T0058468.1 MGP_C3HHeJ_G0026487.1 mouse_genomes_project 2 160221668 160222523 + 1110008F13Rik protein_coding processed_transcript MGP_C3HHeJ_T0052074.1 MGP_C3HHeJ_G0025050.1 mouse_genomes_project 2 1928712 1948472 + MGP_C3HHeJ_P0052074 Phyh protein_coding protein_coding MGP_C3HHeJ_T0052075.1 MGP_C3HHeJ_G0025050.1 mouse_genomes_project 2 1928773 1938597 + Phyh protein_coding processed_transcript MGP_C3HHeJ_T0052076.1 MGP_C3HHeJ_G0025050.1 mouse_genomes_project 2 1947224 1948085 + Phyh protein_coding processed_transcript MGP_C3HHeJ_T0101176.1 MGP_C3HHeJ_G0039325.1 mouse_genomes_project 2 113211377 113212502 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013629.1 MGP_C3HHeJ_G0011733.1 mouse_genomes_project 2 141399860 141400174 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055580.1 MGP_C3HHeJ_G0025813.1 mouse_genomes_project 2 89369767 89370700 - MGP_C3HHeJ_P0055580 Olfr1226 protein_coding protein_coding MGP_C3HHeJ_T0010281.1 MGP_C3HHeJ_G0008414.1 mouse_genomes_project 2 7717800 7717881 + Mir466h miRNA miRNA MGP_C3HHeJ_T0059372.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185153487 185157819 + MGP_C3HHeJ_P0059372 Mrgbp protein_coding protein_coding MGP_C3HHeJ_T0059373.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154896 185158472 + MGP_C3HHeJ_P0059373 Mrgbp protein_coding protein_coding MGP_C3HHeJ_T0059374.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154907 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0059375.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154910 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0059376.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154916 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0059377.1 MGP_C3HHeJ_G0026712.1 mouse_genomes_project 2 185154942 185158489 + Mrgbp protein_coding retained_intron MGP_C3HHeJ_T0099171.1 MGP_C3HHeJ_G0037365.1 mouse_genomes_project 2 257194 257335 - Gm22005 snRNA snRNA MGP_C3HHeJ_T0054277.1 MGP_C3HHeJ_G0025440.1 mouse_genomes_project 2 37350774 37359455 + MGP_C3HHeJ_P0054277 Wdr38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054278.1 MGP_C3HHeJ_G0025440.1 mouse_genomes_project 2 37351617 37354881 + MGP_C3HHeJ_P0054278 Wdr38 protein_coding protein_coding MGP_C3HHeJ_T0054279.1 MGP_C3HHeJ_G0025440.1 mouse_genomes_project 2 37351630 37353573 + Wdr38 protein_coding processed_transcript MGP_C3HHeJ_T0007129.1 MGP_C3HHeJ_G0005841.1 mouse_genomes_project 2 61451755 61456018 - Gm13565 lincRNA lincRNA MGP_C3HHeJ_T0057008.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127033874 127038164 - Myef2 protein_coding processed_transcript MGP_C3HHeJ_T0057009.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127035432 127073271 - MGP_C3HHeJ_P0057009 Myef2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057010.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127035729 127073302 - MGP_C3HHeJ_P0057010 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057011.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127036902 127073299 - MGP_C3HHeJ_P0057011 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057012.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127036903 127073337 - MGP_C3HHeJ_P0057012 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057013.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127036903 127073336 - MGP_C3HHeJ_P0057013 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057014.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127037986 127066539 - MGP_C3HHeJ_P0057014 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057015.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127044617 127073090 - MGP_C3HHeJ_P0057015 Myef2 protein_coding protein_coding MGP_C3HHeJ_T0057016.1 MGP_C3HHeJ_G0026142.1 mouse_genomes_project 2 127048471 127073251 - Myef2 protein_coding retained_intron MGP_C3HHeJ_T0057417.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133359836 133374094 - MGP_C3HHeJ_P0057417 1700037H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057418.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133359837 133362541 - 1700037H04Rik protein_coding retained_intron MGP_C3HHeJ_T0057419.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133359837 133374080 - MGP_C3HHeJ_P0057419 1700037H04Rik protein_coding protein_coding MGP_C3HHeJ_T0057420.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133360306 133374084 - MGP_C3HHeJ_P0057420 1700037H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057421.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133360316 133374141 - MGP_C3HHeJ_P0057421 1700037H04Rik protein_coding protein_coding MGP_C3HHeJ_T0057422.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133360673 133374102 - MGP_C3HHeJ_P0057422 1700037H04Rik protein_coding protein_coding MGP_C3HHeJ_T0057423.1 MGP_C3HHeJ_G0026242.1 mouse_genomes_project 2 133361793 133374102 - 1700037H04Rik protein_coding processed_transcript MGP_C3HHeJ_T0054561.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58541964 58784285 + MGP_C3HHeJ_P0054561 Tanc1 protein_coding protein_coding MGP_C3HHeJ_T0054562.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58541995 58579327 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054563.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58559970 58576875 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054564.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58576680 58783853 + MGP_C3HHeJ_P0054564 Tanc1 protein_coding protein_coding MGP_C3HHeJ_T0054565.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58626866 58783861 + MGP_C3HHeJ_P0054565 Tanc1 protein_coding protein_coding MGP_C3HHeJ_T0054566.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58638359 58656349 + Tanc1 protein_coding processed_transcript MGP_C3HHeJ_T0054567.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58675718 58757973 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054568.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58702359 58705448 + Tanc1 protein_coding processed_transcript MGP_C3HHeJ_T0054569.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58715531 58721320 + Tanc1 protein_coding processed_transcript MGP_C3HHeJ_T0054570.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58742355 58745792 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0054571.1 MGP_C3HHeJ_G0025488.1 mouse_genomes_project 2 58779875 58783851 + Tanc1 protein_coding retained_intron MGP_C3HHeJ_T0055499.1 MGP_C3HHeJ_G0025739.1 mouse_genomes_project 2 87618496 87619535 - MGP_C3HHeJ_P0055499 Olfr1128 protein_coding protein_coding MGP_C3HHeJ_T0017587.1 MGP_C3HHeJ_G0015205.1 mouse_genomes_project 2 91537830 91545802 - Gm13783 processed_transcript processed_transcript MGP_C3HHeJ_T0001064.1 MGP_C3HHeJ_G0001000.1 mouse_genomes_project 2 131330791 131331832 - TEC TEC MGP_C3HHeJ_T0053605.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954464 28961771 - MGP_C3HHeJ_P0053605 Tor1a protein_coding protein_coding MGP_C3HHeJ_T0053606.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954517 28961710 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0053607.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954849 28957686 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0053608.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28954890 28957713 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0053609.1 MGP_C3HHeJ_G0025313.1 mouse_genomes_project 2 28960748 28961726 - Tor1a protein_coding retained_intron MGP_C3HHeJ_T0056803.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122803512 122817177 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056804.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804026 122832256 + MGP_C3HHeJ_P0056804 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056805.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804067 122832255 + MGP_C3HHeJ_P0056805 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056806.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804073 122832256 + MGP_C3HHeJ_P0056806 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056807.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804098 122832255 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056808.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804104 122808675 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056809.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804126 122827702 + MGP_C3HHeJ_P0056809 Tubgcp4 protein_coding protein_coding MGP_C3HHeJ_T0056810.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804151 122817220 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056811.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122804440 122819461 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056812.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122806425 122817223 + Tubgcp4 protein_coding processed_transcript MGP_C3HHeJ_T0056813.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122816359 122817550 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056814.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122820095 122830535 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056815.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122820841 122825151 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0056816.1 MGP_C3HHeJ_G0026104.1 mouse_genomes_project 2 122824684 122829717 + Tubgcp4 protein_coding retained_intron MGP_C3HHeJ_T0003904.1 MGP_C3HHeJ_G0003481.1 mouse_genomes_project 2 57207879 57219229 + Gm13544 antisense antisense MGP_C3HHeJ_T0057072.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128609029 128642498 - MGP_C3HHeJ_P0057072 Hdc protein_coding protein_coding MGP_C3HHeJ_T0057073.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128609946 128615356 - Hdc protein_coding processed_transcript MGP_C3HHeJ_T0057074.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128617337 128642481 - Hdc protein_coding retained_intron MGP_C3HHeJ_T0057075.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128622816 128626146 - Hdc protein_coding processed_transcript MGP_C3HHeJ_T0057076.1 MGP_C3HHeJ_G0026160.1 mouse_genomes_project 2 128640108 128643119 - Hdc protein_coding processed_transcript MGP_C3HHeJ_T0054024.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979211 32984789 + MGP_C3HHeJ_P0054024 Hspa5 protein_coding protein_coding MGP_C3HHeJ_T0054025.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979336 32983773 + MGP_C3HHeJ_P0054025 Hspa5 protein_coding protein_coding MGP_C3HHeJ_T0054026.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979340 32980549 + MGP_C3HHeJ_P0054026 Hspa5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054027.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32979822 32981434 + Hspa5 protein_coding retained_intron MGP_C3HHeJ_T0054028.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32980907 32981575 + Hspa5 protein_coding retained_intron MGP_C3HHeJ_T0054029.1 MGP_C3HHeJ_G0025374.1 mouse_genomes_project 2 32982088 32982857 + Hspa5 protein_coding retained_intron MGP_C3HHeJ_T0056313.1 MGP_C3HHeJ_G0025973.1 mouse_genomes_project 2 112237654 112238593 + MGP_C3HHeJ_P0056313 Olfr1276 protein_coding protein_coding MGP_C3HHeJ_T0055077.1 MGP_C3HHeJ_G0025577.1 mouse_genomes_project 2 74190669 74193959 + MGP_C3HHeJ_P0055077 Hoxd13 protein_coding protein_coding MGP_C3HHeJ_T0056391.1 MGP_C3HHeJ_G0026019.1 mouse_genomes_project 2 115279969 115283988 - MGP_C3HHeJ_P0056391 Gjd2 protein_coding protein_coding MGP_C3HHeJ_T0101934.1 MGP_C3HHeJ_G0039899.1 mouse_genomes_project 2 178103833 178163180 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0058437.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872825 159893287 + MGP_C3HHeJ_P0058437 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0058438.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872837 159894104 + MGP_C3HHeJ_P0058438 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0058439.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872849 159875942 + Aar2 protein_coding processed_transcript MGP_C3HHeJ_T0058440.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872851 159876323 + MGP_C3HHeJ_P0058440 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0058441.1 MGP_C3HHeJ_G0026483.1 mouse_genomes_project 2 159872865 159876076 + MGP_C3HHeJ_P0058441 Aar2 protein_coding protein_coding MGP_C3HHeJ_T0052846.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137906 23139745 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0052847.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137906 23139845 + MGP_C3HHeJ_P0052847 Clic3 protein_coding protein_coding MGP_C3HHeJ_T0052848.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137917 23139845 + MGP_C3HHeJ_P0052848 Clic3 protein_coding protein_coding MGP_C3HHeJ_T0052849.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137959 23139845 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0052850.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23137965 23139752 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0052851.1 MGP_C3HHeJ_G0025182.1 mouse_genomes_project 2 23138704 23139284 + Clic3 protein_coding processed_transcript MGP_C3HHeJ_T0101915.1 MGP_C3HHeJ_G0039880.1 mouse_genomes_project 2 88746944 88748584 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052756.1 MGP_C3HHeJ_G0025166.1 mouse_genomes_project 2 22904946 22905800 + MGP_C3HHeJ_P0052756 Tmem203 protein_coding protein_coding MGP_C3HHeJ_T0056334.1 MGP_C3HHeJ_G0025994.1 mouse_genomes_project 2 113168749 113169712 - MGP_C3HHeJ_P0056334 Olfr1308 protein_coding protein_coding MGP_C3HHeJ_T0052870.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181135 23185091 - MGP_C3HHeJ_P0052870 C8g protein_coding protein_coding MGP_C3HHeJ_T0052871.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181135 23183488 - MGP_C3HHeJ_P0052871 C8g protein_coding protein_coding MGP_C3HHeJ_T0052872.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181140 23182740 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052873.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181140 23181987 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052874.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181140 23182720 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052875.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181142 23182728 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0052876.1 MGP_C3HHeJ_G0025185.1 mouse_genomes_project 2 23181381 23182599 - C8g protein_coding processed_transcript MGP_C3HHeJ_T0058826.1 MGP_C3HHeJ_G0026583.1 mouse_genomes_project 2 168408803 168420750 - MGP_C3HHeJ_P0058826 Wfdc11 protein_coding protein_coding MGP_C3HHeJ_T0058827.1 MGP_C3HHeJ_G0026583.1 mouse_genomes_project 2 168408946 168411369 - MGP_C3HHeJ_P0058827 Wfdc11 protein_coding protein_coding MGP_C3HHeJ_T0055473.1 MGP_C3HHeJ_G0025721.1 mouse_genomes_project 2 87036335 87037274 - MGP_C3HHeJ_P0055473 Olfr1106 protein_coding protein_coding MGP_C3HHeJ_T0007166.1 MGP_C3HHeJ_G0005872.1 mouse_genomes_project 2 77890074 77954214 + Gm14461 lincRNA lincRNA MGP_C3HHeJ_T0007167.1 MGP_C3HHeJ_G0005872.1 mouse_genomes_project 2 77953675 77953984 + Gm14461 lincRNA lincRNA MGP_C3HHeJ_T0013300.1 MGP_C3HHeJ_G0011404.1 mouse_genomes_project 2 15711877 15712356 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013265.1 MGP_C3HHeJ_G0011369.1 mouse_genomes_project 2 667072 668141 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013482.1 MGP_C3HHeJ_G0011586.1 mouse_genomes_project 2 80666299 80666914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053214.1 MGP_C3HHeJ_G0025251.1 mouse_genomes_project 2 25671114 25827264 + MGP_C3HHeJ_P0053214 Col5a1 protein_coding protein_coding MGP_C3HHeJ_T0053215.1 MGP_C3HHeJ_G0025251.1 mouse_genomes_project 2 25803168 25823823 + MGP_C3HHeJ_P0053215 Col5a1 protein_coding protein_coding MGP_C3HHeJ_T0057991.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155867675 155918653 - MGP_C3HHeJ_P0057991 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057992.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155867679 155917591 - MGP_C3HHeJ_P0057992 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057993.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155868418 155915461 - Bcl2l1 protein_coding processed_transcript MGP_C3HHeJ_T0057994.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155915052 155917566 - MGP_C3HHeJ_P0057994 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057995.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155915287 155917236 - MGP_C3HHeJ_P0057995 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057996.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916352 155918037 - MGP_C3HHeJ_P0057996 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057997.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916454 155917577 - MGP_C3HHeJ_P0057997 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057998.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916626 155917543 - MGP_C3HHeJ_P0057998 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0057999.1 MGP_C3HHeJ_G0026396.1 mouse_genomes_project 2 155916682 155918635 - MGP_C3HHeJ_P0057999 Bcl2l1 protein_coding protein_coding MGP_C3HHeJ_T0007203.1 MGP_C3HHeJ_G0005901.1 mouse_genomes_project 2 106854960 106856962 - Gm29053 lincRNA lincRNA MGP_C3HHeJ_T0057892.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580039 154599236 + MGP_C3HHeJ_P0057892 Fkbp1a protein_coding protein_coding MGP_C3HHeJ_T0057893.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580141 154598372 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057894.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580150 154597164 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057895.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580150 154582234 + Fkbp1a protein_coding retained_intron MGP_C3HHeJ_T0057896.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580171 154597372 + Fkbp1a protein_coding retained_intron MGP_C3HHeJ_T0057897.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580177 154598486 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057898.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580252 154595028 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057899.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154580293 154598197 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0057900.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154581455 154599234 + MGP_C3HHeJ_P0057900 Fkbp1a protein_coding protein_coding MGP_C3HHeJ_T0057901.1 MGP_C3HHeJ_G0026358.1 mouse_genomes_project 2 154582966 154598257 + Fkbp1a protein_coding processed_transcript MGP_C3HHeJ_T0058612.1 MGP_C3HHeJ_G0026517.1 mouse_genomes_project 2 162265045 162283590 + MGP_C3HHeJ_P0058612 Fam83d protein_coding protein_coding MGP_C3HHeJ_T0058613.1 MGP_C3HHeJ_G0026517.1 mouse_genomes_project 2 162278360 162283590 + Fam83d protein_coding retained_intron MGP_C3HHeJ_T0058346.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159390672 159434125 - MGP_C3HHeJ_P0058346 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058347.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159390672 159417316 - MGP_C3HHeJ_P0058347 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058363.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397761 159443856 - MGP_C3HHeJ_P0058363 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058364.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397761 159443856 - MGP_C3HHeJ_P0058364 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058365.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397761 159443856 - MGP_C3HHeJ_P0058365 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058366.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397923 159434150 - MGP_C3HHeJ_P0058366 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058367.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159397929 159416159 - MGP_C3HHeJ_P0058367 Gm28036 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058368.1 MGP_C3HHeJ_G0026474.1 mouse_genomes_project 2 159398256 159434155 - MGP_C3HHeJ_P0058368 Gm28036 protein_coding protein_coding MGP_C3HHeJ_T0013456.1 MGP_C3HHeJ_G0011560.1 mouse_genomes_project 2 72614180 72614671 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011426.1 MGP_C3HHeJ_G0009559.1 mouse_genomes_project 2 168516677 168516993 + Gm22596 misc_RNA misc_RNA MGP_C3HHeJ_T0007080.1 MGP_C3HHeJ_G0005802.1 mouse_genomes_project 2 23918261 23923211 - Gm13553 lincRNA lincRNA MGP_C3HHeJ_T0059364.1 MGP_C3HHeJ_G0026709.1 mouse_genomes_project 2 184877934 184887499 - MGP_C3HHeJ_P0059364 Gata5 protein_coding protein_coding MGP_C3HHeJ_T0013620.1 MGP_C3HHeJ_G0011724.1 mouse_genomes_project 2 134944111 134944716 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052174.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7042167 7063823 - MGP_C3HHeJ_P0052174 Gata3 protein_coding protein_coding MGP_C3HHeJ_T0052175.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7048240 7058904 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0052176.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7059718 7060631 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0052177.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7059933 7075257 - MGP_C3HHeJ_P0052177 Gata3 protein_coding protein_coding MGP_C3HHeJ_T0052178.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7063066 7073007 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0052179.1 MGP_C3HHeJ_G0025066.1 mouse_genomes_project 2 7063121 7075225 - Gata3 protein_coding processed_transcript MGP_C3HHeJ_T0101932.1 MGP_C3HHeJ_G0039897.1 mouse_genomes_project 2 157224964 157229314 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052129.1 MGP_C3HHeJ_G0025060.1 mouse_genomes_project 2 2931646 2976950 - MGP_C3HHeJ_P0052129 Dhtkd1 protein_coding protein_coding MGP_C3HHeJ_T0052130.1 MGP_C3HHeJ_G0025060.1 mouse_genomes_project 2 2932716 2976901 - MGP_C3HHeJ_P0052130 Dhtkd1 protein_coding protein_coding MGP_C3HHeJ_T0052131.1 MGP_C3HHeJ_G0025060.1 mouse_genomes_project 2 2939145 2947155 - Dhtkd1 protein_coding processed_transcript MGP_C3HHeJ_T0007140.1 MGP_C3HHeJ_G0005852.1 mouse_genomes_project 2 72178620 72208172 + 8430437L04Rik lincRNA lincRNA MGP_C3HHeJ_T0054940.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70661073 70762201 - MGP_C3HHeJ_P0054940 Slc25a12 protein_coding protein_coding MGP_C3HHeJ_T0054941.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70664127 70761985 - MGP_C3HHeJ_P0054941 Slc25a12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054942.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70664514 70684124 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0054943.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70668993 70672170 - Slc25a12 protein_coding retained_intron MGP_C3HHeJ_T0054944.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70703526 70723646 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0054945.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70724542 70738790 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0054946.1 MGP_C3HHeJ_G0025553.1 mouse_genomes_project 2 70738647 70742591 - Slc25a12 protein_coding processed_transcript MGP_C3HHeJ_T0057226.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130934066 130972192 + MGP_C3HHeJ_P0057226 Tmem87b protein_coding protein_coding MGP_C3HHeJ_T0057227.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130934287 130972195 + MGP_C3HHeJ_P0057227 Tmem87b protein_coding unknown_likely_coding MGP_C3HHeJ_T0057228.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130934332 130969723 + MGP_C3HHeJ_P0057228 Tmem87b protein_coding protein_coding MGP_C3HHeJ_T0057229.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130948252 130968247 + Tmem87b protein_coding processed_transcript MGP_C3HHeJ_T0057230.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130957790 130967656 + Tmem87b protein_coding retained_intron MGP_C3HHeJ_T0057231.1 MGP_C3HHeJ_G0026195.1 mouse_genomes_project 2 130967890 130969342 + Tmem87b protein_coding processed_transcript MGP_C3HHeJ_T0058133.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642175 157748936 + MGP_C3HHeJ_P0058133 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058134.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642178 157736220 + MGP_C3HHeJ_P0058134 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058135.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642189 157748936 + MGP_C3HHeJ_P0058135 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058136.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642229 157727631 + MGP_C3HHeJ_P0058136 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058137.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157642536 157713877 + MGP_C3HHeJ_P0058137 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058138.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157719629 157748936 + MGP_C3HHeJ_P0058138 Cbfa2t2 protein_coding protein_coding MGP_C3HHeJ_T0058139.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157725768 157727859 + Cbfa2t2 protein_coding retained_intron MGP_C3HHeJ_T0058140.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157733790 157741201 + Cbfa2t2 protein_coding retained_intron MGP_C3HHeJ_T0058141.1 MGP_C3HHeJ_G0026433.1 mouse_genomes_project 2 157740640 157744567 + Cbfa2t2 protein_coding retained_intron MGP_C3HHeJ_T0007349.1 MGP_C3HHeJ_G0006023.1 mouse_genomes_project 2 184923290 184938701 - B230312C02Rik lincRNA lincRNA MGP_C3HHeJ_T0057850.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706159 153729119 + MGP_C3HHeJ_P0057850 Entpd6 protein_coding protein_coding MGP_C3HHeJ_T0057851.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706198 153720806 + Entpd6 protein_coding retained_intron MGP_C3HHeJ_T0057852.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706209 153721256 + Entpd6 protein_coding processed_transcript MGP_C3HHeJ_T0057853.1 MGP_C3HHeJ_G0026350.1 mouse_genomes_project 2 153706288 153710342 + Entpd6 protein_coding processed_transcript MGP_C3HHeJ_T0013634.1 MGP_C3HHeJ_G0011738.1 mouse_genomes_project 2 143552047 143552532 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017608.1 MGP_C3HHeJ_G0015215.1 mouse_genomes_project 2 110873366 110885016 - Platr8 processed_transcript processed_transcript MGP_C3HHeJ_T0055435.1 MGP_C3HHeJ_G0025685.1 mouse_genomes_project 2 86004190 86005135 - MGP_C3HHeJ_P0055435 Olfr1043 protein_coding protein_coding MGP_C3HHeJ_T0052741.1 MGP_C3HHeJ_G0025164.1 mouse_genomes_project 2 22891762 22892905 + MGP_C3HHeJ_P0052741 Rnf208 protein_coding protein_coding MGP_C3HHeJ_T0052742.1 MGP_C3HHeJ_G0025164.1 mouse_genomes_project 2 22892436 22893769 + MGP_C3HHeJ_P0052742 Rnf208 protein_coding protein_coding MGP_C3HHeJ_T0052743.1 MGP_C3HHeJ_G0025164.1 mouse_genomes_project 2 22892445 22893770 + MGP_C3HHeJ_P0052743 Rnf208 protein_coding protein_coding MGP_C3HHeJ_T0055522.1 MGP_C3HHeJ_G0025760.1 mouse_genomes_project 2 87993700 87994657 + MGP_C3HHeJ_P0055522 Olfr1153 protein_coding protein_coding MGP_C3HHeJ_T0100492.1 MGP_C3HHeJ_G0038686.1 mouse_genomes_project 2 151002225 151002538 + Gm24221 snoRNA snoRNA MGP_C3HHeJ_T0101168.1 MGP_C3HHeJ_G0039319.1 mouse_genomes_project 2 22100076 22100662 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013728.1 MGP_C3HHeJ_G0011832.1 mouse_genomes_project 2 178774503 178774864 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055408.1 MGP_C3HHeJ_G0025659.1 mouse_genomes_project 2 85215648 85216761 - MGP_C3HHeJ_P0055408 Olfr995 protein_coding protein_coding MGP_C3HHeJ_T0057603.1 MGP_C3HHeJ_G0026279.1 mouse_genomes_project 2 139283749 139301992 - MGP_C3HHeJ_P0057603 Mkks protein_coding protein_coding MGP_C3HHeJ_T0057604.1 MGP_C3HHeJ_G0026279.1 mouse_genomes_project 2 139283749 139301999 - MGP_C3HHeJ_P0057604 Mkks protein_coding protein_coding MGP_C3HHeJ_T0057605.1 MGP_C3HHeJ_G0026279.1 mouse_genomes_project 2 139291188 139301764 - MGP_C3HHeJ_P0057605 Mkks protein_coding protein_coding MGP_C3HHeJ_T0010385.1 MGP_C3HHeJ_G0008518.1 mouse_genomes_project 2 158910420 158910499 + Mir499 miRNA miRNA MGP_C3HHeJ_T0058710.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122436 167141972 + MGP_C3HHeJ_P0058710 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0058711.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122438 167141623 + MGP_C3HHeJ_P0058711 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0058712.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122438 167140603 + MGP_C3HHeJ_P0058712 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0058713.1 MGP_C3HHeJ_G0026539.1 mouse_genomes_project 2 167122493 167140445 + MGP_C3HHeJ_P0058713 Gdap1l1 protein_coding protein_coding MGP_C3HHeJ_T0003968.1 MGP_C3HHeJ_G0003525.1 mouse_genomes_project 2 103446555 103455388 - Gm13872 antisense antisense MGP_C3HHeJ_T0003969.1 MGP_C3HHeJ_G0003525.1 mouse_genomes_project 2 103452296 103455375 - Gm13872 antisense antisense MGP_C3HHeJ_T0003970.1 MGP_C3HHeJ_G0003525.1 mouse_genomes_project 2 103453283 103455389 - Gm13872 antisense antisense MGP_C3HHeJ_T0001003.1 MGP_C3HHeJ_G0000940.1 mouse_genomes_project 2 9688256 9691302 - TEC TEC MGP_C3HHeJ_T0055428.1 MGP_C3HHeJ_G0025678.1 mouse_genomes_project 2 85800986 85801943 + MGP_C3HHeJ_P0055428 Olfr1030 protein_coding protein_coding MGP_C3HHeJ_T0101924.1 MGP_C3HHeJ_G0039889.1 mouse_genomes_project 2 120807684 120807925 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0053663.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594809 29640502 + MGP_C3HHeJ_P0053663 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053664.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594949 29617423 + MGP_C3HHeJ_P0053664 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053665.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594950 29607060 + Fubp3 protein_coding retained_intron MGP_C3HHeJ_T0053666.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594972 29620714 + MGP_C3HHeJ_P0053666 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053667.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594975 29640495 + MGP_C3HHeJ_P0053667 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053668.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29594985 29620700 + MGP_C3HHeJ_P0053668 Fubp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053669.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29625422 29636088 + MGP_C3HHeJ_P0053669 Fubp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053670.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29626857 29638913 + MGP_C3HHeJ_P0053670 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053671.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29635511 29639692 + MGP_C3HHeJ_P0053671 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053672.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29637741 29640494 + MGP_C3HHeJ_P0053672 Fubp3 protein_coding protein_coding MGP_C3HHeJ_T0053673.1 MGP_C3HHeJ_G0025321.1 mouse_genomes_project 2 29638159 29640496 + Fubp3 protein_coding retained_intron MGP_C3HHeJ_T0001008.1 MGP_C3HHeJ_G0000945.1 mouse_genomes_project 2 10356497 10360456 + TEC TEC MGP_C3HHeJ_T0098402.1 MGP_C3HHeJ_G0036608.1 mouse_genomes_project 2 164153261 164155099 + Gm14222 sense_intronic sense_intronic MGP_C3HHeJ_T0055031.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72939931 72965973 - MGP_C3HHeJ_P0055031 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055032.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72948718 72998355 - MGP_C3HHeJ_P0055032 protein_coding protein_coding MGP_C3HHeJ_T0055033.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72955712 72963875 - MGP_C3HHeJ_P0055033 protein_coding protein_coding MGP_C3HHeJ_T0055034.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72955772 73042746 - protein_coding processed_transcript MGP_C3HHeJ_T0055035.1 MGP_C3HHeJ_G0025570.1 mouse_genomes_project 2 72959192 73042649 - protein_coding processed_transcript MGP_C3HHeJ_T0100480.1 MGP_C3HHeJ_G0038674.1 mouse_genomes_project 2 129761223 129761281 + Gm22889 snoRNA snoRNA MGP_C3HHeJ_T0013491.1 MGP_C3HHeJ_G0011595.1 mouse_genomes_project 2 83533786 83535039 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052574.1 MGP_C3HHeJ_G0025133.1 mouse_genomes_project 2 20871708 20959362 + MGP_C3HHeJ_P0052574 Nxph2 protein_coding protein_coding MGP_C3HHeJ_T0054788.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67951175 67982515 + MGP_C3HHeJ_P0054788 4932414N04Rik protein_coding protein_coding MGP_C3HHeJ_T0054789.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67952573 68033132 + MGP_C3HHeJ_P0054789 4932414N04Rik protein_coding protein_coding MGP_C3HHeJ_T0054790.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67952602 67963475 + 4932414N04Rik protein_coding processed_transcript MGP_C3HHeJ_T0054791.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 67954527 68033130 + MGP_C3HHeJ_P0054791 4932414N04Rik protein_coding protein_coding MGP_C3HHeJ_T0054792.1 MGP_C3HHeJ_G0025524.1 mouse_genomes_project 2 68008053 68009052 + 4932414N04Rik protein_coding retained_intron MGP_C3HHeJ_T0052512.1 MGP_C3HHeJ_G0025120.1 mouse_genomes_project 2 18750059 18775390 - MGP_C3HHeJ_P0052512 Enkur protein_coding protein_coding MGP_C3HHeJ_T0052513.1 MGP_C3HHeJ_G0025120.1 mouse_genomes_project 2 18764128 18775264 - Enkur protein_coding processed_transcript MGP_C3HHeJ_T0052514.1 MGP_C3HHeJ_G0025120.1 mouse_genomes_project 2 18766482 18775377 - Enkur protein_coding processed_transcript MGP_C3HHeJ_T0007322.1 MGP_C3HHeJ_G0005999.1 mouse_genomes_project 2 172131505 172133416 - E130018N17Rik lincRNA lincRNA MGP_C3HHeJ_T0013546.1 MGP_C3HHeJ_G0011650.1 mouse_genomes_project 2 104263130 104263560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055774.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91602794 91608388 + MGP_C3HHeJ_P0055774 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055775.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91602955 91603969 + Pacsin3 protein_coding retained_intron MGP_C3HHeJ_T0055776.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91602984 91607360 + MGP_C3HHeJ_P0055776 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055777.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603002 91611499 + MGP_C3HHeJ_P0055777 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055778.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603653 91608065 + MGP_C3HHeJ_P0055778 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055779.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603653 91611498 + MGP_C3HHeJ_P0055779 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055780.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603653 91611499 + MGP_C3HHeJ_P0055780 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055781.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91603678 91608154 + MGP_C3HHeJ_P0055781 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055782.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91604169 91611499 + MGP_C3HHeJ_P0055782 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055783.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91604175 91608120 + MGP_C3HHeJ_P0055783 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055784.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91606024 91607048 + Pacsin3 protein_coding processed_transcript MGP_C3HHeJ_T0055785.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91606647 91608417 + MGP_C3HHeJ_P0055785 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0055786.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91607623 91608488 + Pacsin3 protein_coding retained_intron MGP_C3HHeJ_T0055787.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91609732 91610353 + Pacsin3 protein_coding retained_intron MGP_C3HHeJ_T0055788.1 MGP_C3HHeJ_G0025868.1 mouse_genomes_project 2 91609925 91611179 + MGP_C3HHeJ_P0055788 Pacsin3 protein_coding protein_coding MGP_C3HHeJ_T0000988.1 MGP_C3HHeJ_G0000925.1 mouse_genomes_project 2 753308 754660 - TEC TEC MGP_C3HHeJ_T0013725.1 MGP_C3HHeJ_G0011829.1 mouse_genomes_project 2 176282411 176283026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098102.1 MGP_C3HHeJ_G0036314.1 mouse_genomes_project 2 74471746 74471846 - n-R5s198 rRNA rRNA MGP_C3HHeJ_T0017537.1 MGP_C3HHeJ_G0015172.1 mouse_genomes_project 2 28254226 28273141 - Gm14471 processed_transcript processed_transcript MGP_C3HHeJ_T0054175.1 MGP_C3HHeJ_G0025404.1 mouse_genomes_project 2 34907498 34908434 + MGP_C3HHeJ_P0054175 Olfr345 protein_coding protein_coding MGP_C3HHeJ_T0053340.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 27662906 30394076 + Golga2 protein_coding retained_intron MGP_C3HHeJ_T0053756.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30370706 30382597 + MGP_C3HHeJ_P0053756 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053757.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371575 30394087 + MGP_C3HHeJ_P0053757 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053758.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371635 30394078 + MGP_C3HHeJ_P0053758 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053759.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371655 30389125 + MGP_C3HHeJ_P0053759 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053760.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371668 30394079 + MGP_C3HHeJ_P0053760 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053761.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371673 30384131 + MGP_C3HHeJ_P0053761 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053762.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30371677 30388366 + MGP_C3HHeJ_P0053762 Golga2 protein_coding protein_coding MGP_C3HHeJ_T0053763.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30383609 30384092 + Golga2 protein_coding retained_intron MGP_C3HHeJ_T0053764.1 MGP_C3HHeJ_G0025277.1 mouse_genomes_project 2 30386033 30389115 + Golga2 protein_coding retained_intron MGP_C3HHeJ_T0101893.1 MGP_C3HHeJ_G0039858.1 mouse_genomes_project 2 85448764 85449218 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003883.1 MGP_C3HHeJ_G0003466.1 mouse_genomes_project 2 31789653 31791054 + C130021I20Rik antisense antisense MGP_C3HHeJ_T0003884.1 MGP_C3HHeJ_G0003466.1 mouse_genomes_project 2 31789791 31794815 + C130021I20Rik antisense antisense MGP_C3HHeJ_T0054311.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968433 38989314 - Lrp1b protein_coding processed_transcript MGP_C3HHeJ_T0054312.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968435 41094005 - MGP_C3HHeJ_P0054312 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054313.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968721 39006636 - MGP_C3HHeJ_P0054313 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054314.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38968721 39086279 - MGP_C3HHeJ_P0054314 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054315.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 38973464 39037953 - MGP_C3HHeJ_P0054315 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054316.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39060540 39083256 - Lrp1b protein_coding retained_intron MGP_C3HHeJ_T0054317.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39191913 40200551 - MGP_C3HHeJ_P0054317 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054318.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39686934 41093437 - MGP_C3HHeJ_P0054318 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054319.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 39910502 41093453 - Lrp1b protein_coding retained_intron MGP_C3HHeJ_T0054320.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 40478839 41093306 - MGP_C3HHeJ_P0054320 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0054321.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 40748333 41093636 - Lrp1b protein_coding retained_intron MGP_C3HHeJ_T0054322.1 MGP_C3HHeJ_G0025446.1 mouse_genomes_project 2 41090244 41093395 - MGP_C3HHeJ_P0054322 Lrp1b protein_coding protein_coding MGP_C3HHeJ_T0056360.1 MGP_C3HHeJ_G0026009.1 mouse_genomes_project 2 113610351 113646368 + MGP_C3HHeJ_P0056360 Katnbl1 protein_coding protein_coding MGP_C3HHeJ_T0056361.1 MGP_C3HHeJ_G0026009.1 mouse_genomes_project 2 113610366 113639653 + Katnbl1 protein_coding retained_intron MGP_C3HHeJ_T0055407.1 MGP_C3HHeJ_G0025658.1 mouse_genomes_project 2 85207716 85208661 - MGP_C3HHeJ_P0055407 Olfr994 protein_coding protein_coding MGP_C3HHeJ_T0058047.1 MGP_C3HHeJ_G0026407.1 mouse_genomes_project 2 156333652 156347315 - MGP_C3HHeJ_P0058047 Plagl2 protein_coding protein_coding MGP_C3HHeJ_T0058048.1 MGP_C3HHeJ_G0026407.1 mouse_genomes_project 2 156333665 156343796 - MGP_C3HHeJ_P0058048 Plagl2 protein_coding protein_coding MGP_C3HHeJ_T0013346.1 MGP_C3HHeJ_G0011450.1 mouse_genomes_project 2 33569886 33570513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010347.1 MGP_C3HHeJ_G0008480.1 mouse_genomes_project 2 93021972 93022044 + Mir7221 miRNA miRNA MGP_C3HHeJ_T0017689.1 MGP_C3HHeJ_G0015250.1 mouse_genomes_project 2 165121927 165122250 - Gm29229 processed_transcript processed_transcript MGP_C3HHeJ_T0013409.1 MGP_C3HHeJ_G0011513.1 mouse_genomes_project 2 55969504 55970194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055553.1 MGP_C3HHeJ_G0025789.1 mouse_genomes_project 2 88874579 88875506 - MGP_C3HHeJ_P0055553 Olfr1198 protein_coding protein_coding MGP_C3HHeJ_T0055409.1 MGP_C3HHeJ_G0025660.1 mouse_genomes_project 2 85254545 85289758 - MGP_C3HHeJ_P0055409 4833423E24Rik protein_coding protein_coding MGP_C3HHeJ_T0013726.1 MGP_C3HHeJ_G0011830.1 mouse_genomes_project 2 178302898 178303108 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055120.1 MGP_C3HHeJ_G0025596.1 mouse_genomes_project 2 75975623 75991900 + MGP_C3HHeJ_P0055120 Rbm45 protein_coding protein_coding MGP_C3HHeJ_T0013402.1 MGP_C3HHeJ_G0011506.1 mouse_genomes_project 2 53087642 53088459 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057170.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129614380 129629399 - MGP_C3HHeJ_P0057170 Prom2 protein_coding protein_coding MGP_C3HHeJ_T0057171.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129614862 129629317 - MGP_C3HHeJ_P0057171 Prom2 protein_coding protein_coding MGP_C3HHeJ_T0057172.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129622702 129623134 - Prom2 protein_coding processed_transcript MGP_C3HHeJ_T0057173.1 MGP_C3HHeJ_G0026181.1 mouse_genomes_project 2 129628169 129629346 - Prom2 protein_coding retained_intron MGP_C3HHeJ_T0004098.1 MGP_C3HHeJ_G0003618.1 mouse_genomes_project 2 171606712 171613376 + Gm14320 antisense antisense MGP_C3HHeJ_T0013373.1 MGP_C3HHeJ_G0011477.1 mouse_genomes_project 2 39401947 39402300 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004119.1 MGP_C3HHeJ_G0003633.1 mouse_genomes_project 2 185556110 185569304 + Gm14341 antisense antisense MGP_C3HHeJ_T0058067.1 MGP_C3HHeJ_G0026412.1 mouse_genomes_project 2 156628892 156629944 + MGP_C3HHeJ_P0058067 4930404H24Rik protein_coding protein_coding MGP_C3HHeJ_T0057130.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129286291 129300883 + Snrnp200 protein_coding retained_intron MGP_C3HHeJ_T0057131.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129286304 129320278 + MGP_C3HHeJ_P0057131 Snrnp200 protein_coding protein_coding MGP_C3HHeJ_T0057132.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129299856 129304834 + Snrnp200 protein_coding processed_transcript MGP_C3HHeJ_T0057133.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129316673 129318138 + Snrnp200 protein_coding retained_intron MGP_C3HHeJ_T0057134.1 MGP_C3HHeJ_G0026171.1 mouse_genomes_project 2 129317903 129319787 + Snrnp200 protein_coding retained_intron MGP_C3HHeJ_T0056523.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560607 120584005 + MGP_C3HHeJ_P0056523 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056524.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560607 120619931 + MGP_C3HHeJ_P0056524 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056525.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560635 120580703 + MGP_C3HHeJ_P0056525 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056526.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120560638 120587652 + MGP_C3HHeJ_P0056526 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0056527.1 MGP_C3HHeJ_G0026050.1 mouse_genomes_project 2 120570917 120622128 + MGP_C3HHeJ_P0056527 Casc5 protein_coding protein_coding MGP_C3HHeJ_T0098282.1 MGP_C3HHeJ_G0036494.1 mouse_genomes_project 2 107679667 107679791 + Gm22813 scaRNA scaRNA MGP_C3HHeJ_T0001061.1 MGP_C3HHeJ_G0000998.1 mouse_genomes_project 2 119508756 119514635 + TEC TEC MGP_C3HHeJ_T0055324.1 MGP_C3HHeJ_G0025632.1 mouse_genomes_project 2 84400980 84403344 + Btbd18 protein_coding processed_transcript MGP_C3HHeJ_T0055325.1 MGP_C3HHeJ_G0025632.1 mouse_genomes_project 2 84401447 84409883 + MGP_C3HHeJ_P0055325 Btbd18 protein_coding protein_coding MGP_C3HHeJ_T0056387.1 MGP_C3HHeJ_G0026017.1 mouse_genomes_project 2 115047091 115098118 - MGP_C3HHeJ_P0056387 Scg5 protein_coding protein_coding MGP_C3HHeJ_T0056388.1 MGP_C3HHeJ_G0026017.1 mouse_genomes_project 2 115096329 115097753 - Scg5 protein_coding processed_transcript MGP_C3HHeJ_T0054079.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334209 33406019 + MGP_C3HHeJ_P0054079 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054080.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334209 33406731 + MGP_C3HHeJ_P0054080 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054081.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334209 33357158 + MGP_C3HHeJ_P0054081 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054082.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334325 33406729 + MGP_C3HHeJ_P0054082 Cntrl protein_coding unknown_likely_coding MGP_C3HHeJ_T0054083.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33334336 33406331 + MGP_C3HHeJ_P0054083 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054084.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33352630 33374418 + MGP_C3HHeJ_P0054084 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054085.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358664 33387383 + MGP_C3HHeJ_P0054085 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054086.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358664 33406731 + MGP_C3HHeJ_P0054086 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054087.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358688 33364120 + MGP_C3HHeJ_P0054087 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054088.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33358688 33374418 + MGP_C3HHeJ_P0054088 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054089.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33371842 33374418 + MGP_C3HHeJ_P0054089 Cntrl protein_coding protein_coding MGP_C3HHeJ_T0054090.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33387054 33392855 + MGP_C3HHeJ_P0054090 Cntrl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054091.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33388805 33393283 + Cntrl protein_coding retained_intron MGP_C3HHeJ_T0054092.1 MGP_C3HHeJ_G0025383.1 mouse_genomes_project 2 33403156 33406720 + Cntrl protein_coding retained_intron MGP_C3HHeJ_T0013338.1 MGP_C3HHeJ_G0011442.1 mouse_genomes_project 2 30352635 30354007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017545.1 MGP_C3HHeJ_G0015177.1 mouse_genomes_project 2 33795767 33804932 - Gm13446 processed_transcript processed_transcript MGP_C3HHeJ_T0017546.1 MGP_C3HHeJ_G0015177.1 mouse_genomes_project 2 33801078 33804715 - Gm13446 processed_transcript processed_transcript MGP_C3HHeJ_T0100490.1 MGP_C3HHeJ_G0038684.1 mouse_genomes_project 2 146960173 146960311 - Gm26165 snoRNA snoRNA MGP_C3HHeJ_T0053838.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30676889 30677900 + Pip5kl1 protein_coding processed_transcript MGP_C3HHeJ_T0053839.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30677810 30685900 + MGP_C3HHeJ_P0053839 Pip5kl1 protein_coding protein_coding MGP_C3HHeJ_T0053840.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30677935 30685889 + MGP_C3HHeJ_P0053840 Pip5kl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053841.1 MGP_C3HHeJ_G0025346.1 mouse_genomes_project 2 30682044 30685890 + Pip5kl1 protein_coding retained_intron MGP_C3HHeJ_T0052356.1 MGP_C3HHeJ_G0025095.1 mouse_genomes_project 2 11579839 11696735 + MGP_C3HHeJ_P0052356 Mrc1 protein_coding protein_coding MGP_C3HHeJ_T0052357.1 MGP_C3HHeJ_G0025095.1 mouse_genomes_project 2 11693238 11696605 + Mrc1 protein_coding retained_intron MGP_C3HHeJ_T0003873.1 MGP_C3HHeJ_G0003456.1 mouse_genomes_project 2 29657855 29664992 - Gm13425 antisense antisense MGP_C3HHeJ_T0056017.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94908403 94934914 - MGP_C3HHeJ_P0056017 Api5 protein_coding protein_coding MGP_C3HHeJ_T0056018.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94912961 94934890 - Api5 protein_coding processed_transcript MGP_C3HHeJ_T0056019.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94917037 94935058 - Api5 protein_coding retained_intron MGP_C3HHeJ_T0056020.1 MGP_C3HHeJ_G0025907.1 mouse_genomes_project 2 94921778 94926708 - Api5 protein_coding processed_transcript MGP_C3HHeJ_T0010315.1 MGP_C3HHeJ_G0008448.1 mouse_genomes_project 2 30405691 30405801 + Mir199b miRNA miRNA MGP_C3HHeJ_T0059224.1 MGP_C3HHeJ_G0026674.1 mouse_genomes_project 2 177512313 177566194 - MGP_C3HHeJ_P0059224 Pmepa1 protein_coding protein_coding MGP_C3HHeJ_T0059225.1 MGP_C3HHeJ_G0026674.1 mouse_genomes_project 2 177515901 177565850 - MGP_C3HHeJ_P0059225 Pmepa1 protein_coding protein_coding MGP_C3HHeJ_T0059226.1 MGP_C3HHeJ_G0026674.1 mouse_genomes_project 2 177516066 177522577 - Pmepa1 protein_coding retained_intron MGP_C3HHeJ_T0013342.1 MGP_C3HHeJ_G0011446.1 mouse_genomes_project 2 31801920 31804168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052000.1 MGP_C3HHeJ_G0025038.1 mouse_genomes_project 2 312220 339008 - MGP_C3HHeJ_P0052000 Olah protein_coding protein_coding MGP_C3HHeJ_T0052001.1 MGP_C3HHeJ_G0025038.1 mouse_genomes_project 2 312225 369433 - MGP_C3HHeJ_P0052001 Olah protein_coding protein_coding MGP_C3HHeJ_T0052002.1 MGP_C3HHeJ_G0025038.1 mouse_genomes_project 2 312255 338986 - MGP_C3HHeJ_P0052002 Olah protein_coding protein_coding MGP_C3HHeJ_T0007257.1 MGP_C3HHeJ_G0005945.1 mouse_genomes_project 2 139717198 139757888 + Gm14055 lincRNA lincRNA MGP_C3HHeJ_T0059324.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615104 184630307 + MGP_C3HHeJ_P0059324 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059325.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615120 184630429 + protein_coding retained_intron MGP_C3HHeJ_T0059326.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615124 184625243 + protein_coding retained_intron MGP_C3HHeJ_T0059327.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184615124 184630436 + MGP_C3HHeJ_P0059327 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059328.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184623235 184627508 + protein_coding retained_intron MGP_C3HHeJ_T0059329.1 MGP_C3HHeJ_G0026701.1 mouse_genomes_project 2 184627521 184630434 + protein_coding retained_intron MGP_C3HHeJ_T0010297.1 MGP_C3HHeJ_G0008430.1 mouse_genomes_project 2 22704521 22704584 + Mir7664 miRNA miRNA MGP_C3HHeJ_T0101392.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177884148 177965999 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101393.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177885266 177965999 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101394.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177886027 177934740 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101395.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177889731 177965999 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101396.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177890678 177895573 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101397.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177891411 177896124 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101398.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177900916 177965999 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101399.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177900916 177965828 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101400.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177901943 177913630 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101401.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177901957 177966100 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101402.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177913291 177965964 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101403.1 MGP_C3HHeJ_G0039442.1 mouse_genomes_project 2 177920509 177965995 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101929.1 MGP_C3HHeJ_G0039894.1 mouse_genomes_project 2 141667716 141667945 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0052988.1 MGP_C3HHeJ_G0025213.1 mouse_genomes_project 2 23941858 23970614 - MGP_C3HHeJ_P0052988 Qsox2 protein_coding protein_coding MGP_C3HHeJ_T0052989.1 MGP_C3HHeJ_G0025213.1 mouse_genomes_project 2 23941860 23970787 - MGP_C3HHeJ_P0052989 Qsox2 protein_coding protein_coding MGP_C3HHeJ_T0054416.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48741251 48868875 + MGP_C3HHeJ_P0054416 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054417.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48741284 48865976 + MGP_C3HHeJ_P0054417 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054418.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48741286 48868870 + MGP_C3HHeJ_P0054418 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054419.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48802767 48868869 + MGP_C3HHeJ_P0054419 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0054420.1 MGP_C3HHeJ_G0025457.1 mouse_genomes_project 2 48840252 48849366 + MGP_C3HHeJ_P0054420 Lypd6 protein_coding protein_coding MGP_C3HHeJ_T0007241.1 MGP_C3HHeJ_G0005932.1 mouse_genomes_project 2 130341668 130343646 - Gm14012 lincRNA lincRNA MGP_C3HHeJ_T0059217.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439567 177445793 + MGP_C3HHeJ_P0059217 Pck1 protein_coding protein_coding MGP_C3HHeJ_T0059218.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439592 177441329 + Pck1 protein_coding processed_transcript MGP_C3HHeJ_T0059219.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439592 177440979 + Pck1 protein_coding retained_intron MGP_C3HHeJ_T0059220.1 MGP_C3HHeJ_G0026672.1 mouse_genomes_project 2 177439601 177445791 + Pck1 protein_coding retained_intron MGP_C3HHeJ_T0055254.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358604 80374462 + MGP_C3HHeJ_P0055254 Dusp19 protein_coding protein_coding MGP_C3HHeJ_T0055255.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358659 80374531 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0055256.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358785 80373625 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0055257.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358790 80366900 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0055259.1 MGP_C3HHeJ_G0025618.1 mouse_genomes_project 2 80358825 80375169 + Dusp19 protein_coding processed_transcript MGP_C3HHeJ_T0017505.1 MGP_C3HHeJ_G0015154.1 mouse_genomes_project 2 1270206 1285958 - Gm13187 processed_transcript processed_transcript MGP_C3HHeJ_T0017506.1 MGP_C3HHeJ_G0015154.1 mouse_genomes_project 2 1274444 1286013 - Gm13187 processed_transcript processed_transcript MGP_C3HHeJ_T0017507.1 MGP_C3HHeJ_G0015154.1 mouse_genomes_project 2 1285356 1286013 - Gm13187 processed_transcript processed_transcript MGP_C3HHeJ_T0051997.1 MGP_C3HHeJ_G0025036.1 mouse_genomes_project 2 298184 301879 - MGP_C3HHeJ_P0051997 Rpp38 protein_coding protein_coding MGP_C3HHeJ_T0007169.1 MGP_C3HHeJ_G0005874.1 mouse_genomes_project 2 82193657 82209777 - A130030D18Rik lincRNA lincRNA MGP_C3HHeJ_T0013438.1 MGP_C3HHeJ_G0011542.1 mouse_genomes_project 2 66060062 66061576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052522.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19828850 20113648 + MGP_C3HHeJ_P0052522 Myo3a protein_coding protein_coding MGP_C3HHeJ_T0052523.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19828852 19899239 + Myo3a protein_coding processed_transcript MGP_C3HHeJ_T0052524.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19828852 19890143 + Myo3a protein_coding processed_transcript MGP_C3HHeJ_T0052525.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 19842455 19997910 + MGP_C3HHeJ_P0052525 Myo3a protein_coding protein_coding MGP_C3HHeJ_T0052526.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 20043978 20113643 + MGP_C3HHeJ_P0052526 Myo3a protein_coding protein_coding MGP_C3HHeJ_T0052527.1 MGP_C3HHeJ_G0025123.1 mouse_genomes_project 2 20063576 20096331 + Myo3a protein_coding processed_transcript MGP_C3HHeJ_T0055993.1 MGP_C3HHeJ_G0025902.1 mouse_genomes_project 2 94444445 94445685 - MGP_C3HHeJ_P0055993 protein_coding protein_coding MGP_C3HHeJ_T0055994.1 MGP_C3HHeJ_G0025902.1 mouse_genomes_project 2 94444451 94445837 - MGP_C3HHeJ_P0055994 protein_coding protein_coding MGP_C3HHeJ_T0059365.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185009988 185029377 + MGP_C3HHeJ_P0059365 Slco4a1 protein_coding protein_coding MGP_C3HHeJ_T0059366.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185010077 185029355 + Slco4a1 protein_coding processed_transcript MGP_C3HHeJ_T0059367.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185014738 185029377 + MGP_C3HHeJ_P0059367 Slco4a1 protein_coding protein_coding MGP_C3HHeJ_T0059368.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185020830 185022154 + Slco4a1 protein_coding retained_intron MGP_C3HHeJ_T0059369.1 MGP_C3HHeJ_G0026710.1 mouse_genomes_project 2 185026247 185029362 + Slco4a1 protein_coding retained_intron MGP_C3HHeJ_T0100482.1 MGP_C3HHeJ_G0038676.1 mouse_genomes_project 2 132226594 132226681 + snoRNA snoRNA MGP_C3HHeJ_T0017542.1 MGP_C3HHeJ_G0015175.1 mouse_genomes_project 2 30108696 30123691 - Gm16534 processed_transcript processed_transcript MGP_C3HHeJ_T0017543.1 MGP_C3HHeJ_G0015175.1 mouse_genomes_project 2 30109491 30124438 - Gm16534 processed_transcript processed_transcript MGP_C3HHeJ_T0010290.1 MGP_C3HHeJ_G0008423.1 mouse_genomes_project 2 14984271 14984384 + Mir6419 miRNA miRNA MGP_C3HHeJ_T0052009.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396145 435086 + MGP_C3HHeJ_P0052009 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052010.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396145 438105 + MGP_C3HHeJ_P0052010 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052011.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396164 411318 + Dclre1c protein_coding processed_transcript MGP_C3HHeJ_T0052012.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396164 428067 + MGP_C3HHeJ_P0052012 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052013.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396179 411356 + Dclre1c protein_coding processed_transcript MGP_C3HHeJ_T0052014.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396179 435078 + MGP_C3HHeJ_P0052014 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052015.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 396216 416181 + Dclre1c protein_coding retained_intron MGP_C3HHeJ_T0052016.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 414803 432896 + MGP_C3HHeJ_P0052016 Dclre1c protein_coding protein_coding MGP_C3HHeJ_T0052017.1 MGP_C3HHeJ_G0025040.1 mouse_genomes_project 2 426923 427842 + Dclre1c protein_coding processed_transcript MGP_C3HHeJ_T0057840.1 MGP_C3HHeJ_G0026346.1 mouse_genomes_project 2 153537106 153545636 + MGP_C3HHeJ_P0057840 Cst7 protein_coding protein_coding MGP_C3HHeJ_T0055359.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592113 84617541 + MGP_C3HHeJ_P0055359 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055360.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592658 84604127 + MGP_C3HHeJ_P0055360 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055361.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592671 84617549 + MGP_C3HHeJ_P0055361 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055362.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84592680 84616351 + Slc43a1 protein_coding retained_intron MGP_C3HHeJ_T0055363.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84593461 84617544 + MGP_C3HHeJ_P0055363 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0055364.1 MGP_C3HHeJ_G0025644.1 mouse_genomes_project 2 84593887 84617557 + MGP_C3HHeJ_P0055364 Slc43a1 protein_coding protein_coding MGP_C3HHeJ_T0013576.1 MGP_C3HHeJ_G0011680.1 mouse_genomes_project 2 113057810 113058625 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004062.1 MGP_C3HHeJ_G0003591.1 mouse_genomes_project 2 158878000 158880328 + Gssos2 antisense antisense MGP_C3HHeJ_T0004063.1 MGP_C3HHeJ_G0003591.1 mouse_genomes_project 2 158879384 158880314 + Gssos2 antisense antisense MGP_C3HHeJ_T0055447.1 MGP_C3HHeJ_G0025697.1 mouse_genomes_project 2 86230288 86231230 - MGP_C3HHeJ_P0055447 Olfr1056 protein_coding protein_coding MGP_C3HHeJ_T0055437.1 MGP_C3HHeJ_G0025687.1 mouse_genomes_project 2 86023948 86024908 - MGP_C3HHeJ_P0055437 Olfr52 protein_coding protein_coding MGP_C3HHeJ_T0003902.1 MGP_C3HHeJ_G0003480.1 mouse_genomes_project 2 57101805 57111066 + Gm13546 antisense antisense MGP_C3HHeJ_T0003903.1 MGP_C3HHeJ_G0003480.1 mouse_genomes_project 2 57103755 57110340 + Gm13546 antisense antisense MGP_C3HHeJ_T0055960.1 MGP_C3HHeJ_G0025898.1 mouse_genomes_project 2 94123773 94163722 + MGP_C3HHeJ_P0055960 Alx4 protein_coding protein_coding MGP_C3HHeJ_T0055961.1 MGP_C3HHeJ_G0025898.1 mouse_genomes_project 2 94123777 94163722 + MGP_C3HHeJ_P0055961 Alx4 protein_coding protein_coding MGP_C3HHeJ_T0054957.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70938329 70944191 + MGP_C3HHeJ_P0054957 Dlx1 protein_coding protein_coding MGP_C3HHeJ_T0054958.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70938899 70940282 + MGP_C3HHeJ_P0054958 Dlx1 protein_coding protein_coding MGP_C3HHeJ_T0054959.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70939317 70940448 + MGP_C3HHeJ_P0054959 Dlx1 protein_coding protein_coding MGP_C3HHeJ_T0054960.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70940069 70942736 + MGP_C3HHeJ_P0054960 Dlx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054961.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70940163 70944192 + Dlx1 protein_coding retained_intron MGP_C3HHeJ_T0054962.1 MGP_C3HHeJ_G0025556.1 mouse_genomes_project 2 70940996 70942905 + Dlx1 protein_coding retained_intron MGP_C3HHeJ_T0059197.1 MGP_C3HHeJ_G0026666.1 mouse_genomes_project 2 176778492 176779895 + protein_coding processed_transcript MGP_C3HHeJ_T0057341.1 MGP_C3HHeJ_G0026225.1 mouse_genomes_project 2 132626802 132732854 + MGP_C3HHeJ_P0057341 Ptpra protein_coding protein_coding MGP_C3HHeJ_T0057342.1 MGP_C3HHeJ_G0026225.1 mouse_genomes_project 2 132650561 132737595 + MGP_C3HHeJ_P0057342 Ptpra protein_coding protein_coding MGP_C3HHeJ_T0017598.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327676 105337650 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017599.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327692 105337647 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017600.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327697 105341040 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017601.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327705 105337723 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017602.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105327973 105337644 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0017603.1 MGP_C3HHeJ_G0015212.1 mouse_genomes_project 2 105336782 105338429 + Platr14 processed_transcript processed_transcript MGP_C3HHeJ_T0013383.1 MGP_C3HHeJ_G0011487.1 mouse_genomes_project 2 47441715 47442686 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004033.1 MGP_C3HHeJ_G0003567.1 mouse_genomes_project 2 143827958 143833610 - Macrod2os2 antisense antisense MGP_C3HHeJ_T0004035.1 MGP_C3HHeJ_G0003567.1 mouse_genomes_project 2 143830272 143830659 - Macrod2os2 antisense antisense MGP_C3HHeJ_T0013336.1 MGP_C3HHeJ_G0011440.1 mouse_genomes_project 2 29684798 29685756 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013355.1 MGP_C3HHeJ_G0011459.1 mouse_genomes_project 2 35780319 35781089 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057031.1 MGP_C3HHeJ_G0026149.1 mouse_genomes_project 2 127532037 127597017 - MGP_C3HHeJ_P0057031 Cep152 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057032.1 MGP_C3HHeJ_G0026149.1 mouse_genomes_project 2 127532042 127597156 - MGP_C3HHeJ_P0057032 Cep152 protein_coding protein_coding MGP_C3HHeJ_T0003860.1 MGP_C3HHeJ_G0003445.1 mouse_genomes_project 2 24791783 24795352 + Gm13398 antisense antisense MGP_C3HHeJ_T0055922.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92832413 92862852 - MGP_C3HHeJ_P0055922 Cry2 protein_coding protein_coding MGP_C3HHeJ_T0055923.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92840085 92862845 - MGP_C3HHeJ_P0055923 Cry2 protein_coding protein_coding MGP_C3HHeJ_T0055924.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92853980 92862845 - Cry2 protein_coding processed_transcript MGP_C3HHeJ_T0055925.1 MGP_C3HHeJ_G0025889.1 mouse_genomes_project 2 92855730 92861201 - Cry2 protein_coding processed_transcript MGP_C3HHeJ_T0007077.1 MGP_C3HHeJ_G0005800.1 mouse_genomes_project 2 23868350 23872041 - C330006A16Rik lincRNA lincRNA MGP_C3HHeJ_T0007078.1 MGP_C3HHeJ_G0005800.1 mouse_genomes_project 2 23869902 23870322 - C330006A16Rik lincRNA lincRNA MGP_C3HHeJ_T0058572.1 MGP_C3HHeJ_G0026508.1 mouse_genomes_project 2 161714201 161749101 + MGP_C3HHeJ_P0058572 Bpi protein_coding protein_coding MGP_C3HHeJ_T0058573.1 MGP_C3HHeJ_G0026508.1 mouse_genomes_project 2 161714201 161748965 + MGP_C3HHeJ_P0058573 Bpi protein_coding protein_coding MGP_C3HHeJ_T0058574.1 MGP_C3HHeJ_G0026508.1 mouse_genomes_project 2 161714201 161749104 + MGP_C3HHeJ_P0058574 Bpi protein_coding protein_coding MGP_C3HHeJ_T0052243.1 MGP_C3HHeJ_G0025079.1 mouse_genomes_project 2 8901493 8950726 + MGP_C3HHeJ_P0052243 Il2ra protein_coding protein_coding MGP_C3HHeJ_T0052244.1 MGP_C3HHeJ_G0025079.1 mouse_genomes_project 2 8901535 8907441 + MGP_C3HHeJ_P0052244 Il2ra protein_coding protein_coding MGP_C3HHeJ_T0052246.1 MGP_C3HHeJ_G0025079.1 mouse_genomes_project 2 8937432 8937934 + Il2ra protein_coding retained_intron MGP_C3HHeJ_T0010356.1 MGP_C3HHeJ_G0008489.1 mouse_genomes_project 2 104571645 104571741 - Gm22761 miRNA miRNA MGP_C3HHeJ_T0052906.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23270841 23298677 - MGP_C3HHeJ_P0052906 Rabl6 protein_coding protein_coding MGP_C3HHeJ_T0052907.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23271934 23279834 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052908.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23271934 23298621 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052909.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23271958 23272884 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052910.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23273012 23273647 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052911.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23273497 23275797 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052912.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23275934 23278621 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052913.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23276016 23298641 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0052914.1 MGP_C3HHeJ_G0025192.1 mouse_genomes_project 2 23286337 23298612 - Rabl6 protein_coding processed_transcript MGP_C3HHeJ_T0013306.1 MGP_C3HHeJ_G0011410.1 mouse_genomes_project 2 16609559 16610957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059132.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172754804 - MGP_C3HHeJ_P0059132 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059133.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172747420 - MGP_C3HHeJ_P0059133 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059134.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172755143 - MGP_C3HHeJ_P0059134 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059135.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632448 172754966 - MGP_C3HHeJ_P0059135 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059136.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172632473 172754968 - MGP_C3HHeJ_P0059136 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059137.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172662233 172671273 - Atp9a protein_coding processed_transcript MGP_C3HHeJ_T0059138.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172667974 172754804 - Atp9a protein_coding retained_intron MGP_C3HHeJ_T0059139.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172693496 172755385 - MGP_C3HHeJ_P0059139 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059140.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172693504 172755419 - MGP_C3HHeJ_P0059140 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059141.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172710523 172726981 - MGP_C3HHeJ_P0059141 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0059142.1 MGP_C3HHeJ_G0026646.1 mouse_genomes_project 2 172710590 172727030 - MGP_C3HHeJ_P0059142 Atp9a protein_coding protein_coding MGP_C3HHeJ_T0013269.1 MGP_C3HHeJ_G0011373.1 mouse_genomes_project 2 1951915 1952226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056565.1 MGP_C3HHeJ_G0026059.1 mouse_genomes_project 2 120792558 120794630 - MGP_C3HHeJ_P0056565 Rhov protein_coding protein_coding MGP_C3HHeJ_T0011399.1 MGP_C3HHeJ_G0009532.1 mouse_genomes_project 2 38971554 38971724 - Gm27348 misc_RNA misc_RNA MGP_C3HHeJ_T0004071.1 MGP_C3HHeJ_G0003599.1 mouse_genomes_project 2 161647737 161651479 + 1700060C20Rik antisense antisense MGP_C3HHeJ_T0007160.1 MGP_C3HHeJ_G0005867.1 mouse_genomes_project 2 75025559 75031360 - Gm13660 lincRNA lincRNA MGP_C3HHeJ_T0058919.1 MGP_C3HHeJ_G0026605.1 mouse_genomes_project 2 168857793 168869443 - MGP_C3HHeJ_P0058919 1700025C18Rik protein_coding protein_coding MGP_C3HHeJ_T0058103.1 MGP_C3HHeJ_G0026422.1 mouse_genomes_project 2 157151346 157176891 + MGP_C3HHeJ_P0058103 Bpifa6 protein_coding protein_coding MGP_C3HHeJ_T0013581.1 MGP_C3HHeJ_G0011685.1 mouse_genomes_project 2 114648300 114648818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053488.1 MGP_C3HHeJ_G0025297.1 mouse_genomes_project 2 28225841 28249238 + MGP_C3HHeJ_P0053488 Gm28038 protein_coding protein_coding MGP_C3HHeJ_T0101916.1 MGP_C3HHeJ_G0039881.1 mouse_genomes_project 2 89537708 89544763 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0053394.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27848865 27880699 + MGP_C3HHeJ_P0053394 Gle1 protein_coding protein_coding MGP_C3HHeJ_T0053395.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27848867 27855526 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053396.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27848962 27856066 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053397.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27858919 27860345 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053398.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27859282 27861322 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053399.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27866453 27869064 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0053400.1 MGP_C3HHeJ_G0025283.1 mouse_genomes_project 2 27875818 27878545 + Gle1 protein_coding retained_intron MGP_C3HHeJ_T0055242.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80041343 80050677 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0055243.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80041343 80080157 + MGP_C3HHeJ_P0055243 Dnajc10 protein_coding protein_coding MGP_C3HHeJ_T0055244.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80057453 80059814 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0055245.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80059713 80066973 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0055246.1 MGP_C3HHeJ_G0025615.1 mouse_genomes_project 2 80073775 80077063 + Dnajc10 protein_coding processed_transcript MGP_C3HHeJ_T0010350.1 MGP_C3HHeJ_G0008483.1 mouse_genomes_project 2 94674783 94674885 - Gm23630 miRNA miRNA MGP_C3HHeJ_T0053438.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28029850 28058573 - MGP_C3HHeJ_P0053438 Zer1 protein_coding protein_coding MGP_C3HHeJ_T0053439.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28029850 28058445 - MGP_C3HHeJ_P0053439 Zer1 protein_coding protein_coding MGP_C3HHeJ_T0053440.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28033793 28035764 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053441.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28034449 28036733 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053442.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28039299 28058576 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053443.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28039560 28058570 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053444.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28040791 28044765 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0053445.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28041168 28041634 - Zer1 protein_coding processed_transcript MGP_C3HHeJ_T0053446.1 MGP_C3HHeJ_G0025289.1 mouse_genomes_project 2 28041506 28042534 - Zer1 protein_coding retained_intron MGP_C3HHeJ_T0013573.1 MGP_C3HHeJ_G0011677.1 mouse_genomes_project 2 112843444 112844380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052575.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21067696 21134842 - MGP_C3HHeJ_P0052575 Spopl protein_coding protein_coding MGP_C3HHeJ_T0052576.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21072148 21134816 - MGP_C3HHeJ_P0052576 Spopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052577.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21072746 21134716 - MGP_C3HHeJ_P0052577 Spopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052578.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21073010 21078764 - Spopl protein_coding retained_intron MGP_C3HHeJ_T0052579.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21081343 21097765 - Spopl protein_coding retained_intron MGP_C3HHeJ_T0052580.1 MGP_C3HHeJ_G0025134.1 mouse_genomes_project 2 21103507 21134844 - MGP_C3HHeJ_P0052580 Spopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054196.1 MGP_C3HHeJ_G0025423.1 mouse_genomes_project 2 35508563 35509493 + MGP_C3HHeJ_P0054196 Olfr366 protein_coding protein_coding MGP_C3HHeJ_T0007193.1 MGP_C3HHeJ_G0005894.1 mouse_genomes_project 2 103903091 103908195 + Gm13874 lincRNA lincRNA MGP_C3HHeJ_T0007194.1 MGP_C3HHeJ_G0005894.1 mouse_genomes_project 2 103903475 103908195 + Gm13874 lincRNA lincRNA MGP_C3HHeJ_T0007195.1 MGP_C3HHeJ_G0005894.1 mouse_genomes_project 2 103907528 103913021 + Gm13874 lincRNA lincRNA MGP_C3HHeJ_T0057477.1 MGP_C3HHeJ_G0026253.1 mouse_genomes_project 2 134165194 134182500 + MGP_C3HHeJ_P0057477 Prnp protein_coding protein_coding MGP_C3HHeJ_T0057478.1 MGP_C3HHeJ_G0026253.1 mouse_genomes_project 2 134165208 134173426 + Prnp protein_coding processed_transcript MGP_C3HHeJ_T0010318.1 MGP_C3HHeJ_G0008451.1 mouse_genomes_project 2 30791313 30791450 - Mir8093 miRNA miRNA MGP_C3HHeJ_T0010320.1 MGP_C3HHeJ_G0008453.1 mouse_genomes_project 2 30820869 30820942 - Mir3960 miRNA miRNA MGP_C3HHeJ_T0017652.1 MGP_C3HHeJ_G0015234.1 mouse_genomes_project 2 133081318 133111431 - A730017L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017653.1 MGP_C3HHeJ_G0015234.1 mouse_genomes_project 2 133085549 133111454 - A730017L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100450.1 MGP_C3HHeJ_G0038644.1 mouse_genomes_project 2 41266231 41266364 + Gm24350 snoRNA snoRNA MGP_C3HHeJ_T0059473.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829616 185844789 - MGP_C3HHeJ_P0059473 Helz2 protein_coding protein_coding MGP_C3HHeJ_T0059474.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829617 185844787 - MGP_C3HHeJ_P0059474 Helz2 protein_coding protein_coding MGP_C3HHeJ_T0059475.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829620 185844725 - MGP_C3HHeJ_P0059475 Helz2 protein_coding protein_coding MGP_C3HHeJ_T0059476.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185829623 185838775 - Helz2 protein_coding retained_intron MGP_C3HHeJ_T0059477.1 MGP_C3HHeJ_G0026732.1 mouse_genomes_project 2 185840177 185844787 - Helz2 protein_coding retained_intron MGP_C3HHeJ_T0101181.1 MGP_C3HHeJ_G0039329.1 mouse_genomes_project 2 163528468 163528916 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0007202.1 MGP_C3HHeJ_G0005900.1 mouse_genomes_project 2 106454740 106457571 - Paupar lincRNA lincRNA MGP_C3HHeJ_T0056021.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 96830200 98172597 + MGP_C3HHeJ_P0056021 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0056022.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 96830247 98171914 + MGP_C3HHeJ_P0056022 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0056023.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 98006758 98172595 + MGP_C3HHeJ_P0056023 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0056024.1 MGP_C3HHeJ_G0025908.1 mouse_genomes_project 2 98007191 98169994 + MGP_C3HHeJ_P0056024 Lrrc4c protein_coding protein_coding MGP_C3HHeJ_T0057786.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149985460 149994695 - MGP_C3HHeJ_P0057786 Nkx2-2 protein_coding protein_coding MGP_C3HHeJ_T0057787.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149991870 149995000 - MGP_C3HHeJ_P0057787 Nkx2-2 protein_coding protein_coding MGP_C3HHeJ_T0057788.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149994900 150002724 - Nkx2-2 protein_coding processed_transcript MGP_C3HHeJ_T0057789.1 MGP_C3HHeJ_G0026322.1 mouse_genomes_project 2 149994977 150002723 - Nkx2-2 protein_coding processed_transcript MGP_C3HHeJ_T0011418.1 MGP_C3HHeJ_G0009551.1 mouse_genomes_project 2 132893584 132893956 - Gm24893 misc_RNA misc_RNA MGP_C3HHeJ_T0017696.1 MGP_C3HHeJ_G0015255.1 mouse_genomes_project 2 172782370 172784337 + Gm14261 processed_transcript processed_transcript MGP_C3HHeJ_T0013430.1 MGP_C3HHeJ_G0011534.1 mouse_genomes_project 2 61691836 61693424 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099193.1 MGP_C3HHeJ_G0037387.1 mouse_genomes_project 2 53863921 53864062 + Gm25489 snRNA snRNA MGP_C3HHeJ_T0058746.1 MGP_C3HHeJ_G0026550.1 mouse_genomes_project 2 167676620 167701783 + MGP_C3HHeJ_P0058746 Ywhab protein_coding protein_coding MGP_C3HHeJ_T0058747.1 MGP_C3HHeJ_G0026550.1 mouse_genomes_project 2 167677169 167698487 + MGP_C3HHeJ_P0058747 Ywhab protein_coding protein_coding MGP_C3HHeJ_T0052139.1 MGP_C3HHeJ_G0025063.1 mouse_genomes_project 2 3218228 3243286 - MGP_C3HHeJ_P0052139 Echdc3 protein_coding protein_coding MGP_C3HHeJ_T0052140.1 MGP_C3HHeJ_G0025063.1 mouse_genomes_project 2 3219272 3225972 - Echdc3 protein_coding processed_transcript MGP_C3HHeJ_T0052141.1 MGP_C3HHeJ_G0025063.1 mouse_genomes_project 2 3236257 3243232 - Echdc3 protein_coding retained_intron MGP_C3HHeJ_T0100433.1 MGP_C3HHeJ_G0038627.1 mouse_genomes_project 2 20413331 20413451 + Gm25544 snoRNA snoRNA MGP_C3HHeJ_T0053194.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25209334 25239407 - MGP_C3HHeJ_P0053194 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053195.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25209334 25239695 - MGP_C3HHeJ_P0053195 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053196.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25209355 25239682 - MGP_C3HHeJ_P0053196 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053197.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25211598 25228125 - MGP_C3HHeJ_P0053197 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053198.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25213280 25275256 - MGP_C3HHeJ_P0053198 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053199.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25213280 25239663 - MGP_C3HHeJ_P0053199 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053200.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25217004 25239662 - Brd3 protein_coding processed_transcript MGP_C3HHeJ_T0053201.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25227539 25239616 - MGP_C3HHeJ_P0053201 Brd3 protein_coding protein_coding MGP_C3HHeJ_T0053202.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25227900 25228591 - Brd3 protein_coding processed_transcript MGP_C3HHeJ_T0053203.1 MGP_C3HHeJ_G0025248.1 mouse_genomes_project 2 25228007 25239190 - Brd3 protein_coding processed_transcript MGP_C3HHeJ_T0013515.1 MGP_C3HHeJ_G0011619.1 mouse_genomes_project 2 91697007 91697175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055249.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80233120 80318084 - MGP_C3HHeJ_P0055249 Nckap1 protein_coding protein_coding MGP_C3HHeJ_T0055250.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80233126 80318200 - MGP_C3HHeJ_P0055250 Nckap1 protein_coding protein_coding MGP_C3HHeJ_T0055251.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80240819 80261769 - Nckap1 protein_coding processed_transcript MGP_C3HHeJ_T0055252.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80281509 80292008 - Nckap1 protein_coding processed_transcript MGP_C3HHeJ_T0055253.1 MGP_C3HHeJ_G0025617.1 mouse_genomes_project 2 80285331 80291728 - Nckap1 protein_coding processed_transcript MGP_C3HHeJ_T0057820.1 MGP_C3HHeJ_G0026338.1 mouse_genomes_project 2 151709510 151714407 - MGP_C3HHeJ_P0057820 9230104L09Rik protein_coding protein_coding MGP_C3HHeJ_T0057821.1 MGP_C3HHeJ_G0026338.1 mouse_genomes_project 2 151709703 151728073 - 9230104L09Rik protein_coding processed_transcript MGP_C3HHeJ_T0058214.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661713 158715271 - MGP_C3HHeJ_P0058214 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058215.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661722 158750895 - MGP_C3HHeJ_P0058215 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058216.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661726 158667742 - Ncoa6 protein_coding retained_intron MGP_C3HHeJ_T0058217.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158661726 158676526 - Ncoa6 protein_coding retained_intron MGP_C3HHeJ_T0058218.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158679799 158750983 - MGP_C3HHeJ_P0058218 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058219.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158691024 158694541 - Ncoa6 protein_coding processed_transcript MGP_C3HHeJ_T0058220.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158695913 158715273 - MGP_C3HHeJ_P0058220 Ncoa6 protein_coding protein_coding MGP_C3HHeJ_T0058221.1 MGP_C3HHeJ_G0026452.1 mouse_genomes_project 2 158712501 158750913 - Ncoa6 protein_coding processed_transcript MGP_C3HHeJ_T0056265.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229510 110289656 + MGP_C3HHeJ_P0056265 Kif18a protein_coding protein_coding MGP_C3HHeJ_T0056266.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229598 110245148 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056267.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229612 110256497 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056268.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229624 110259829 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056269.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110229641 110244879 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056270.1 MGP_C3HHeJ_G0025959.1 mouse_genomes_project 2 110240860 110245148 + Kif18a protein_coding retained_intron MGP_C3HHeJ_T0056571.1 MGP_C3HHeJ_G0026062.1 mouse_genomes_project 2 120876403 120879553 + MGP_C3HHeJ_P0056571 Chac1 protein_coding protein_coding MGP_C3HHeJ_T0007038.1 MGP_C3HHeJ_G0005770.1 mouse_genomes_project 2 844470 860193 + lincRNA lincRNA MGP_C3HHeJ_T0058966.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169389297 169583458 + MGP_C3HHeJ_P0058966 Eya2 protein_coding protein_coding MGP_C3HHeJ_T0058967.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169461937 169583466 + MGP_C3HHeJ_P0058967 Eya2 protein_coding protein_coding MGP_C3HHeJ_T0058968.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169461957 169521435 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0058969.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169519165 169576015 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0058970.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169571562 169576873 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0058971.1 MGP_C3HHeJ_G0026616.1 mouse_genomes_project 2 169579106 169583005 + Eya2 protein_coding processed_transcript MGP_C3HHeJ_T0007131.1 MGP_C3HHeJ_G0005843.1 mouse_genomes_project 2 63476460 63487525 - Gm13575 lincRNA lincRNA MGP_C3HHeJ_T0054187.1 MGP_C3HHeJ_G0025415.1 mouse_genomes_project 2 35210203 35211136 - MGP_C3HHeJ_P0054187 Olfr355 protein_coding protein_coding MGP_C3HHeJ_T0007135.1 MGP_C3HHeJ_G0005847.1 mouse_genomes_project 2 66922588 66932865 - Gm26743 lincRNA lincRNA MGP_C3HHeJ_T0054412.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48453990 48625851 + MGP_C3HHeJ_P0054412 Lypd6b protein_coding protein_coding MGP_C3HHeJ_T0054413.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48454033 48608025 + Lypd6b protein_coding processed_transcript MGP_C3HHeJ_T0054414.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48513879 48619576 + Lypd6b protein_coding processed_transcript MGP_C3HHeJ_T0054415.1 MGP_C3HHeJ_G0025456.1 mouse_genomes_project 2 48615054 48625851 + MGP_C3HHeJ_P0054415 Lypd6b protein_coding unknown_likely_coding MGP_C3HHeJ_T0007224.1 MGP_C3HHeJ_G0005917.1 mouse_genomes_project 2 118366607 118370463 - Gm29340 lincRNA lincRNA MGP_C3HHeJ_T0052590.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888267 21892162 + MGP_C3HHeJ_P0052590 Il1f5 protein_coding protein_coding MGP_C3HHeJ_T0052591.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888524 21890332 + Il1f5 protein_coding retained_intron MGP_C3HHeJ_T0052592.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888535 21892883 + Il1f5 protein_coding processed_transcript MGP_C3HHeJ_T0052593.1 MGP_C3HHeJ_G0025140.1 mouse_genomes_project 2 21888752 21892626 + MGP_C3HHeJ_P0052593 Il1f5 protein_coding protein_coding MGP_C3HHeJ_T0058728.1 MGP_C3HHeJ_G0026544.1 mouse_genomes_project 2 167314601 167337487 - MGP_C3HHeJ_P0058728 Serinc3 protein_coding protein_coding MGP_C3HHeJ_T0058729.1 MGP_C3HHeJ_G0026544.1 mouse_genomes_project 2 167329185 167337481 - Serinc3 protein_coding processed_transcript MGP_C3HHeJ_T0000997.1 MGP_C3HHeJ_G0000934.1 mouse_genomes_project 2 8576194 8577083 + TEC TEC MGP_C3HHeJ_T0013588.1 MGP_C3HHeJ_G0011692.1 mouse_genomes_project 2 121040730 121042851 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001039.1 MGP_C3HHeJ_G0000976.1 mouse_genomes_project 2 36331905 36337238 + TEC TEC MGP_C3HHeJ_T0055549.1 MGP_C3HHeJ_G0025785.1 mouse_genomes_project 2 88746849 88747952 + MGP_C3HHeJ_P0055549 Olfr1193 protein_coding protein_coding MGP_C3HHeJ_T0003947.1 MGP_C3HHeJ_G0003511.1 mouse_genomes_project 2 74219127 74219942 - Gm28793 antisense antisense MGP_C3HHeJ_T0013488.1 MGP_C3HHeJ_G0011592.1 mouse_genomes_project 2 83224659 83225361 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052586.1 MGP_C3HHeJ_G0025137.1 mouse_genomes_project 2 21791950 21802556 + MGP_C3HHeJ_P0052586 Il1f9 protein_coding protein_coding MGP_C3HHeJ_T0056902.1 MGP_C3HHeJ_G0026116.1 mouse_genomes_project 2 123105735 123130402 - MGP_C3HHeJ_P0056902 protein_coding protein_coding MGP_C3HHeJ_T0007337.1 MGP_C3HHeJ_G0006012.1 mouse_genomes_project 2 174776342 174787040 - Gm14264 lincRNA lincRNA MGP_C3HHeJ_T0004076.1 MGP_C3HHeJ_G0003604.1 mouse_genomes_project 2 167099687 167100254 + 2900093K20Rik antisense antisense MGP_C3HHeJ_T0053511.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315437 28336780 + MGP_C3HHeJ_P0053511 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053512.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315449 28319914 + Fam73b protein_coding processed_transcript MGP_C3HHeJ_T0053513.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315458 28330287 + MGP_C3HHeJ_P0053513 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053514.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315470 28320521 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053515.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315497 28321622 + MGP_C3HHeJ_P0053515 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053516.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28315500 28336778 + MGP_C3HHeJ_P0053516 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053517.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28318899 28320522 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053518.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28319631 28322419 + MGP_C3HHeJ_P0053518 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053519.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28322498 28327852 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053520.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28329427 28333266 + Fam73b protein_coding retained_intron MGP_C3HHeJ_T0053521.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28332971 28335359 + MGP_C3HHeJ_P0053521 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0053522.1 MGP_C3HHeJ_G0025301.1 mouse_genomes_project 2 28333202 28335465 + MGP_C3HHeJ_P0053522 Fam73b protein_coding protein_coding MGP_C3HHeJ_T0056331.1 MGP_C3HHeJ_G0025991.1 mouse_genomes_project 2 113024269 113025470 - MGP_C3HHeJ_P0056331 Olfr1303 protein_coding protein_coding MGP_C3HHeJ_T0053660.1 MGP_C3HHeJ_G0025320.1 mouse_genomes_project 2 29484275 29540190 + MGP_C3HHeJ_P0053660 Ass1 protein_coding protein_coding MGP_C3HHeJ_T0053661.1 MGP_C3HHeJ_G0025320.1 mouse_genomes_project 2 29484302 29540191 + MGP_C3HHeJ_P0053661 Ass1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053662.1 MGP_C3HHeJ_G0025320.1 mouse_genomes_project 2 29536484 29540049 + Ass1 protein_coding retained_intron MGP_C3HHeJ_T0055526.1 MGP_C3HHeJ_G0025764.1 mouse_genomes_project 2 88072441 88073398 - MGP_C3HHeJ_P0055526 Olfr74 protein_coding protein_coding MGP_C3HHeJ_T0055544.1 MGP_C3HHeJ_G0025781.1 mouse_genomes_project 2 88633086 88633998 + MGP_C3HHeJ_P0055544 Olfr1186 protein_coding protein_coding MGP_C3HHeJ_T0056194.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105647716 105737040 + MGP_C3HHeJ_P0056194 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056195.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105667623 105791529 + MGP_C3HHeJ_P0056195 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056196.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105689644 105779428 + MGP_C3HHeJ_P0056196 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056197.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105781586 105809736 + MGP_C3HHeJ_P0056197 Ccdc73 protein_coding protein_coding MGP_C3HHeJ_T0056202.1 MGP_C3HHeJ_G0025945.1 mouse_genomes_project 2 105808998 105809789 + Ccdc73 protein_coding processed_transcript MGP_C3HHeJ_T0017529.1 MGP_C3HHeJ_G0015166.1 mouse_genomes_project 2 24197288 24198496 + Gm13568 processed_transcript processed_transcript MGP_C3HHeJ_T0055633.1 MGP_C3HHeJ_G0025849.1 mouse_genomes_project 2 90540047 90540974 - MGP_C3HHeJ_P0055633 Olfr1272 protein_coding protein_coding MGP_C3HHeJ_T0052662.1 MGP_C3HHeJ_G0025150.1 mouse_genomes_project 2 22611549 22612531 - MGP_C3HHeJ_P0052662 Mrpl41 protein_coding protein_coding MGP_C3HHeJ_T0052663.1 MGP_C3HHeJ_G0025150.1 mouse_genomes_project 2 22611927 22612422 - MGP_C3HHeJ_P0052663 Mrpl41 protein_coding protein_coding MGP_C3HHeJ_T0055789.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612112 91624414 + MGP_C3HHeJ_P0055789 Arfgap2 protein_coding protein_coding MGP_C3HHeJ_T0055790.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612143 91613365 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0055791.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612152 91622605 + MGP_C3HHeJ_P0055791 Arfgap2 protein_coding protein_coding MGP_C3HHeJ_T0055792.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612153 91615572 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0055793.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91612521 91614209 + Arfgap2 protein_coding processed_transcript MGP_C3HHeJ_T0055794.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91616161 91620427 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0055795.1 MGP_C3HHeJ_G0025869.1 mouse_genomes_project 2 91616911 91620945 + Arfgap2 protein_coding retained_intron MGP_C3HHeJ_T0098392.1 MGP_C3HHeJ_G0036598.1 mouse_genomes_project 2 1202374 1204643 + Gm38348 sense_intronic sense_intronic MGP_C3HHeJ_T0011392.1 MGP_C3HHeJ_G0009525.1 mouse_genomes_project 2 10561413 10561600 + Gm27540 misc_RNA misc_RNA MGP_C3HHeJ_T0056203.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105916461 105967843 + MGP_C3HHeJ_P0056203 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056204.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105916928 105966574 + MGP_C3HHeJ_P0056204 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056205.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105916933 105966497 + MGP_C3HHeJ_P0056205 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056206.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105917142 105966913 + MGP_C3HHeJ_P0056206 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056207.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105920715 105923850 + Wt1 protein_coding retained_intron MGP_C3HHeJ_T0056208.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105920798 105967847 + MGP_C3HHeJ_P0056208 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056209.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105920798 105967843 + MGP_C3HHeJ_P0056209 Wt1 protein_coding protein_coding MGP_C3HHeJ_T0056210.1 MGP_C3HHeJ_G0025947.1 mouse_genomes_project 2 105956972 105964193 + Wt1 protein_coding retained_intron MGP_C3HHeJ_T0100489.1 MGP_C3HHeJ_G0038683.1 mouse_genomes_project 2 145448310 145448426 + Gm22310 snoRNA snoRNA MGP_C3HHeJ_T0055338.1 MGP_C3HHeJ_G0025636.1 mouse_genomes_project 2 84430376 84459857 - MGP_C3HHeJ_P0055338 Zdhhc5 protein_coding protein_coding MGP_C3HHeJ_T0055339.1 MGP_C3HHeJ_G0025636.1 mouse_genomes_project 2 84455492 84459363 - Zdhhc5 protein_coding processed_transcript MGP_C3HHeJ_T0055340.1 MGP_C3HHeJ_G0025636.1 mouse_genomes_project 2 84455641 84459713 - Zdhhc5 protein_coding processed_transcript MGP_C3HHeJ_T0055985.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94341912 94355708 - MGP_C3HHeJ_P0055985 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055986.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94341913 94343573 - MGP_C3HHeJ_P0055986 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055987.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94341918 94343285 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0055988.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94347626 94351377 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0055989.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94348340 94355708 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0055990.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94352435 94355623 - MGP_C3HHeJ_P0055990 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055991.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94352435 94355633 - MGP_C3HHeJ_P0055991 Accsl protein_coding protein_coding MGP_C3HHeJ_T0055992.1 MGP_C3HHeJ_G0025901.1 mouse_genomes_project 2 94352587 94355244 - Accsl protein_coding processed_transcript MGP_C3HHeJ_T0007067.1 MGP_C3HHeJ_G0005793.1 mouse_genomes_project 2 18663121 18686606 + Gm13376 lincRNA lincRNA MGP_C3HHeJ_T0052473.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17441080 18298472 + MGP_C3HHeJ_P0052473 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052474.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17820606 18365413 + MGP_C3HHeJ_P0052474 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052475.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17820606 18211540 + MGP_C3HHeJ_P0052475 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052476.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 17874534 18211406 + MGP_C3HHeJ_P0052476 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052477.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18049042 18365402 + MGP_C3HHeJ_P0052477 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052478.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18049042 18365402 + MGP_C3HHeJ_P0052478 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052479.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059406 18364763 + MGP_C3HHeJ_P0052479 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052480.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059426 18265635 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0052481.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059443 18365414 + MGP_C3HHeJ_P0052481 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052482.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18059473 18362917 + MGP_C3HHeJ_P0052482 Etl4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052483.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18089227 18263303 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052484.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18089269 18211804 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052485.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18100968 18263393 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052486.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18267067 18297642 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052487.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18276112 18358308 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0052488.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18276112 18340099 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0052489.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18276359 18363068 + MGP_C3HHeJ_P0052489 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052490.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18290970 18365591 + MGP_C3HHeJ_P0052490 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052491.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18290970 18365232 + MGP_C3HHeJ_P0052491 Etl4 protein_coding protein_coding MGP_C3HHeJ_T0052492.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18353567 18363759 + Etl4 protein_coding processed_transcript MGP_C3HHeJ_T0052493.1 MGP_C3HHeJ_G0025118.1 mouse_genomes_project 2 18362331 18365402 + Etl4 protein_coding retained_intron MGP_C3HHeJ_T0007049.1 MGP_C3HHeJ_G0005779.1 mouse_genomes_project 2 4800607 4862740 - Gm13211 lincRNA lincRNA MGP_C3HHeJ_T0013630.1 MGP_C3HHeJ_G0011734.1 mouse_genomes_project 2 141894928 141895437 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004094.1 MGP_C3HHeJ_G0003614.1 mouse_genomes_project 2 169237027 169245245 + Gm14437 antisense antisense MGP_C3HHeJ_T0055557.1 MGP_C3HHeJ_G0025793.1 mouse_genomes_project 2 88948033 88948822 + MGP_C3HHeJ_P0055557 protein_coding protein_coding MGP_C3HHeJ_T0055440.1 MGP_C3HHeJ_G0025690.1 mouse_genomes_project 2 86081433 86082396 - MGP_C3HHeJ_P0055440 Olfr1048 protein_coding protein_coding MGP_C3HHeJ_T0007321.1 MGP_C3HHeJ_G0005998.1 mouse_genomes_project 2 172126900 172132436 - Gm14235 lincRNA lincRNA MGP_C3HHeJ_T0053842.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689212 30701816 + MGP_C3HHeJ_P0053842 St6galnac4 protein_coding protein_coding MGP_C3HHeJ_T0053843.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689256 30696393 + St6galnac4 protein_coding retained_intron MGP_C3HHeJ_T0053844.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689698 30699819 + St6galnac4 protein_coding retained_intron MGP_C3HHeJ_T0053845.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30689742 30701193 + MGP_C3HHeJ_P0053845 St6galnac4 protein_coding protein_coding MGP_C3HHeJ_T0053846.1 MGP_C3HHeJ_G0025347.1 mouse_genomes_project 2 30696393 30699307 + MGP_C3HHeJ_P0053846 St6galnac4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010263.1 MGP_C3HHeJ_G0008396.1 mouse_genomes_project 2 7697502 7697599 + Mir467c miRNA miRNA MGP_C3HHeJ_T0007252.1 MGP_C3HHeJ_G0005940.1 mouse_genomes_project 2 135776201 135778868 + Gm14100 lincRNA lincRNA MGP_C3HHeJ_T0013308.1 MGP_C3HHeJ_G0011412.1 mouse_genomes_project 2 17174724 17174829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099182.1 MGP_C3HHeJ_G0037376.1 mouse_genomes_project 2 25308500 25308626 - Gm25541 snRNA snRNA MGP_C3HHeJ_T0013283.1 MGP_C3HHeJ_G0011387.1 mouse_genomes_project 2 8864740 8866004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052437.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172560 16176963 + MGP_C3HHeJ_P0052437 Commd3 protein_coding protein_coding MGP_C3HHeJ_T0052438.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172599 16176964 + MGP_C3HHeJ_P0052438 Commd3 protein_coding protein_coding MGP_C3HHeJ_T0052439.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172609 16175425 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052440.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172611 16175368 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052441.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172612 16175245 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052442.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16172699 16175133 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052443.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16174390 16175130 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052444.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16174693 16176661 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052445.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16174817 16176714 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052446.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16175079 16176656 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052447.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16175156 16175739 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0052448.1 MGP_C3HHeJ_G0025108.1 mouse_genomes_project 2 16175381 16176234 + Commd3 protein_coding processed_transcript MGP_C3HHeJ_T0007042.1 MGP_C3HHeJ_G0005774.1 mouse_genomes_project 2 3162159 3169609 + Gm10857 lincRNA lincRNA MGP_C3HHeJ_T0007043.1 MGP_C3HHeJ_G0005774.1 mouse_genomes_project 2 3162173 3169554 + Gm10857 lincRNA lincRNA MGP_C3HHeJ_T0059059.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171215705 171267351 - MGP_C3HHeJ_P0059059 B4galt5 protein_coding protein_coding MGP_C3HHeJ_T0059060.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171218451 171222915 - MGP_C3HHeJ_P0059060 B4galt5 protein_coding protein_coding MGP_C3HHeJ_T0059061.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171224826 171231072 - B4galt5 protein_coding processed_transcript MGP_C3HHeJ_T0059062.1 MGP_C3HHeJ_G0026629.1 mouse_genomes_project 2 171224826 171231117 - B4galt5 protein_coding processed_transcript MGP_C3HHeJ_T0058335.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383926 159388257 + Spag4 protein_coding retained_intron MGP_C3HHeJ_T0058336.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383949 159389381 + Spag4 protein_coding retained_intron MGP_C3HHeJ_T0058337.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383978 159387980 + Spag4 protein_coding retained_intron MGP_C3HHeJ_T0058338.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159383995 159388257 + MGP_C3HHeJ_P0058338 Spag4 protein_coding protein_coding MGP_C3HHeJ_T0058339.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159384188 159386081 + MGP_C3HHeJ_P0058339 Spag4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058340.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159384304 159386288 + MGP_C3HHeJ_P0058340 Spag4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058341.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159384493 159386796 + MGP_C3HHeJ_P0058341 Spag4 protein_coding protein_coding MGP_C3HHeJ_T0058342.1 MGP_C3HHeJ_G0026472.1 mouse_genomes_project 2 159385486 159388134 + Spag4 protein_coding processed_transcript MGP_C3HHeJ_T0010405.1 MGP_C3HHeJ_G0008538.1 mouse_genomes_project 2 178595226 178595308 - Mir298 miRNA miRNA MGP_C3HHeJ_T0059380.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185170882 185196878 + MGP_C3HHeJ_P0059380 Col9a3 protein_coding protein_coding MGP_C3HHeJ_T0059381.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185171314 185196874 + MGP_C3HHeJ_P0059381 Col9a3 protein_coding protein_coding MGP_C3HHeJ_T0059382.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185171898 185180485 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0059383.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185177892 185188115 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0059384.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185188802 185195987 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0059385.1 MGP_C3HHeJ_G0026714.1 mouse_genomes_project 2 185190955 185196291 + Col9a3 protein_coding retained_intron MGP_C3HHeJ_T0056548.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728001 120729923 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056549.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728396 120729986 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056550.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728416 120731149 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056551.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728425 120730527 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056552.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120728431 120736765 + MGP_C3HHeJ_P0056552 Zfyve19 protein_coding protein_coding MGP_C3HHeJ_T0056553.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120730221 120734600 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056554.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120730845 120731103 + Zfyve19 protein_coding processed_transcript MGP_C3HHeJ_T0056555.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120731024 120734622 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056556.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120734166 120736108 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0056557.1 MGP_C3HHeJ_G0026056.1 mouse_genomes_project 2 120735975 120736760 + Zfyve19 protein_coding retained_intron MGP_C3HHeJ_T0013277.1 MGP_C3HHeJ_G0011381.1 mouse_genomes_project 2 6745793 6746301 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055585.1 MGP_C3HHeJ_G0025817.1 mouse_genomes_project 2 89452910 89453852 - MGP_C3HHeJ_P0055585 Olfr1231 protein_coding protein_coding MGP_C3HHeJ_T0001007.1 MGP_C3HHeJ_G0000944.1 mouse_genomes_project 2 10331076 10332689 + TEC TEC MGP_C3HHeJ_T0053497.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293955 28309131 - MGP_C3HHeJ_P0053497 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053498.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293955 28309207 - MGP_C3HHeJ_P0053498 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053499.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293957 28309180 - MGP_C3HHeJ_P0053499 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053500.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293957 28309156 - MGP_C3HHeJ_P0053500 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053501.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28293957 28309223 - MGP_C3HHeJ_P0053501 Sh3glb2 protein_coding protein_coding MGP_C3HHeJ_T0053502.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28294281 28309196 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053503.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28294287 28295248 - Sh3glb2 protein_coding processed_transcript MGP_C3HHeJ_T0053504.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28294966 28309228 - Sh3glb2 protein_coding processed_transcript MGP_C3HHeJ_T0053505.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28295032 28296803 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053506.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28295254 28296734 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053507.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28297214 28305255 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053508.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28297236 28304770 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0053509.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28298629 28309136 - Sh3glb2 protein_coding processed_transcript MGP_C3HHeJ_T0053510.1 MGP_C3HHeJ_G0025300.1 mouse_genomes_project 2 28298886 28309151 - Sh3glb2 protein_coding retained_intron MGP_C3HHeJ_T0054104.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485899 33537381 + MGP_C3HHeJ_P0054104 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054105.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485903 33532742 + MGP_C3HHeJ_P0054105 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054106.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485915 33523060 + MGP_C3HHeJ_P0054106 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054107.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485928 33523058 + MGP_C3HHeJ_P0054107 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054108.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33485968 33519938 + MGP_C3HHeJ_P0054108 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054109.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33511870 33537383 + MGP_C3HHeJ_P0054109 Gsn protein_coding protein_coding MGP_C3HHeJ_T0054110.1 MGP_C3HHeJ_G0025385.1 mouse_genomes_project 2 33512003 33514516 + Gsn protein_coding retained_intron MGP_C3HHeJ_T0054492.1 MGP_C3HHeJ_G0025471.1 mouse_genomes_project 2 52008347 52038183 + Arl6ip6 protein_coding processed_transcript MGP_C3HHeJ_T0054493.1 MGP_C3HHeJ_G0025471.1 mouse_genomes_project 2 52008709 52039867 + MGP_C3HHeJ_P0054493 Arl6ip6 protein_coding protein_coding MGP_C3HHeJ_T0053447.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067904 28088830 + MGP_C3HHeJ_P0053447 Tbc1d13 protein_coding protein_coding MGP_C3HHeJ_T0053448.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067904 28071455 + MGP_C3HHeJ_P0053448 Tbc1d13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053449.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067930 28069311 + Tbc1d13 protein_coding retained_intron MGP_C3HHeJ_T0053450.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067949 28071338 + Tbc1d13 protein_coding processed_transcript MGP_C3HHeJ_T0053451.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067964 28070835 + MGP_C3HHeJ_P0053451 Tbc1d13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053452.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28067979 28071672 + Tbc1d13 protein_coding processed_transcript MGP_C3HHeJ_T0053453.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28071188 28077250 + Tbc1d13 protein_coding processed_transcript MGP_C3HHeJ_T0053454.1 MGP_C3HHeJ_G0025290.1 mouse_genomes_project 2 28077004 28081804 + Tbc1d13 protein_coding retained_intron MGP_C3HHeJ_T0013486.1 MGP_C3HHeJ_G0011590.1 mouse_genomes_project 2 82448931 82449271 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058659.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164525089 164690963 - MGP_C3HHeJ_P0058659 Chd6 protein_coding protein_coding MGP_C3HHeJ_T0058660.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164537953 164539533 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058661.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164538075 164542808 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058662.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164558491 164563055 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058663.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164561193 164690963 - MGP_C3HHeJ_P0058663 Chd6 protein_coding protein_coding MGP_C3HHeJ_T0058664.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164570903 164587978 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058665.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164587518 164691016 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058666.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164593576 164597734 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058667.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164605370 164609033 - Chd6 protein_coding processed_transcript MGP_C3HHeJ_T0058668.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164609323 164632117 - MGP_C3HHeJ_P0058668 Chd6 protein_coding protein_coding MGP_C3HHeJ_T0058669.1 MGP_C3HHeJ_G0026527.1 mouse_genomes_project 2 164614507 164690945 - Chd6 protein_coding retained_intron MGP_C3HHeJ_T0058961.1 MGP_C3HHeJ_G0026613.1 mouse_genomes_project 2 169284119 169287553 - MGP_C3HHeJ_P0058961 Trp53rka protein_coding protein_coding MGP_C3HHeJ_T0058962.1 MGP_C3HHeJ_G0026613.1 mouse_genomes_project 2 169285198 169287345 - Trp53rka protein_coding processed_transcript MGP_C3HHeJ_T0054927.1 MGP_C3HHeJ_G0025551.1 mouse_genomes_project 2 70505563 70533178 + MGP_C3HHeJ_P0054927 Cybrd1 protein_coding protein_coding MGP_C3HHeJ_T0057294.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448228 132453573 + protein_coding retained_intron MGP_C3HHeJ_T0057295.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448230 132452695 + protein_coding retained_intron MGP_C3HHeJ_T0057296.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448239 132451320 + MGP_C3HHeJ_P0057296 protein_coding protein_coding MGP_C3HHeJ_T0057297.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448258 132452213 + MGP_C3HHeJ_P0057297 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057298.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448276 132449881 + MGP_C3HHeJ_P0057298 protein_coding protein_coding MGP_C3HHeJ_T0057299.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132448615 132449479 + protein_coding retained_intron MGP_C3HHeJ_T0057300.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132449578 132450049 + protein_coding retained_intron MGP_C3HHeJ_T0057301.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132449941 132452695 + MGP_C3HHeJ_P0057301 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057302.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450082 132451353 + protein_coding retained_intron MGP_C3HHeJ_T0057303.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450257 132451738 + protein_coding retained_intron MGP_C3HHeJ_T0057304.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450379 132451742 + MGP_C3HHeJ_P0057304 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057305.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132450447 132451065 + protein_coding retained_intron MGP_C3HHeJ_T0057306.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132451004 132452246 + protein_coding retained_intron MGP_C3HHeJ_T0057307.1 MGP_C3HHeJ_G0026216.1 mouse_genomes_project 2 132451097 132452013 + MGP_C3HHeJ_P0057307 protein_coding protein_coding MGP_C3HHeJ_T0017589.1 MGP_C3HHeJ_G0015207.1 mouse_genomes_project 2 93299370 93361844 - Gm13791 processed_transcript processed_transcript MGP_C3HHeJ_T0057114.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129196 129147448 + Blvra protein_coding retained_intron MGP_C3HHeJ_T0057115.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129198 129156653 + MGP_C3HHeJ_P0057115 Blvra protein_coding protein_coding MGP_C3HHeJ_T0057116.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129210 129149907 + MGP_C3HHeJ_P0057116 Blvra protein_coding protein_coding MGP_C3HHeJ_T0057117.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129129224 129146997 + MGP_C3HHeJ_P0057117 Blvra protein_coding protein_coding MGP_C3HHeJ_T0057118.1 MGP_C3HHeJ_G0026167.1 mouse_genomes_project 2 129138625 129151680 + MGP_C3HHeJ_P0057118 Blvra protein_coding protein_coding MGP_C3HHeJ_T0017524.1 MGP_C3HHeJ_G0015164.1 mouse_genomes_project 2 24089583 24108891 + Gm13562 processed_transcript processed_transcript MGP_C3HHeJ_T0017525.1 MGP_C3HHeJ_G0015164.1 mouse_genomes_project 2 24102435 24106702 + Gm13562 processed_transcript processed_transcript MGP_C3HHeJ_T0013677.1 MGP_C3HHeJ_G0011781.1 mouse_genomes_project 2 157276035 157278234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013703.1 MGP_C3HHeJ_G0011807.1 mouse_genomes_project 2 164895598 164896055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013485.1 MGP_C3HHeJ_G0011589.1 mouse_genomes_project 2 82366861 82367452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053152.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24768413 + MGP_C3HHeJ_P0053152 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053153.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24768988 + MGP_C3HHeJ_P0053153 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053154.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24772886 + MGP_C3HHeJ_P0053154 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053155.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761489 24772886 + MGP_C3HHeJ_P0053155 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053156.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761576 24769985 + Cacfd1 protein_coding processed_transcript MGP_C3HHeJ_T0053157.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24761645 24767467 + MGP_C3HHeJ_P0053157 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053158.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24762156 24772095 + MGP_C3HHeJ_P0053158 Cacfd1 protein_coding protein_coding MGP_C3HHeJ_T0053159.1 MGP_C3HHeJ_G0025240.1 mouse_genomes_project 2 24767146 24768999 + Cacfd1 protein_coding retained_intron MGP_C3HHeJ_T0017691.1 MGP_C3HHeJ_G0015252.1 mouse_genomes_project 2 169678445 169679796 + BC046401 processed_transcript processed_transcript MGP_C3HHeJ_T0053294.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26765457 26902643 - MGP_C3HHeJ_P0053294 Cfap77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053295.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26765461 26902658 - MGP_C3HHeJ_P0053295 Cfap77 protein_coding protein_coding MGP_C3HHeJ_T0053296.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26766226 26886092 - Cfap77 protein_coding processed_transcript MGP_C3HHeJ_T0053297.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26796845 26902685 - MGP_C3HHeJ_P0053297 Cfap77 protein_coding protein_coding MGP_C3HHeJ_T0053298.1 MGP_C3HHeJ_G0025269.1 mouse_genomes_project 2 26899515 26902678 - Cfap77 protein_coding processed_transcript MGP_C3HHeJ_T0055634.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90738560 90739252 - Ptprj protein_coding processed_transcript MGP_C3HHeJ_T0055635.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90738562 90794174 - MGP_C3HHeJ_P0055635 Ptprj protein_coding protein_coding MGP_C3HHeJ_T0055636.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90741925 90898012 - MGP_C3HHeJ_P0055636 Ptprj protein_coding protein_coding MGP_C3HHeJ_T0055637.1 MGP_C3HHeJ_G0025850.1 mouse_genomes_project 2 90741925 90786323 - MGP_C3HHeJ_P0055637 Ptprj protein_coding protein_coding MGP_C3HHeJ_T0058701.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166866799 166993334 + MGP_C3HHeJ_P0058701 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058702.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166868227 166942043 + MGP_C3HHeJ_P0058702 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058703.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166891378 166992466 + MGP_C3HHeJ_P0058703 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058704.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166891469 166992266 + MGP_C3HHeJ_P0058704 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0058705.1 MGP_C3HHeJ_G0026536.1 mouse_genomes_project 2 166989541 166992266 + MGP_C3HHeJ_P0058705 Tox2 protein_coding protein_coding MGP_C3HHeJ_T0053723.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30226256 30313469 + MGP_C3HHeJ_P0053723 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053724.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30226322 30313454 + MGP_C3HHeJ_P0053724 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053725.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30259688 30310094 + MGP_C3HHeJ_P0053725 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053726.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30284675 30297950 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053727.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30290489 30297609 + MGP_C3HHeJ_P0053727 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053728.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30294369 30297904 + MGP_C3HHeJ_P0053728 Prrc2b protein_coding protein_coding MGP_C3HHeJ_T0053729.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30295503 30297448 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053730.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30295571 30299659 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053731.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30297821 30300611 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0053732.1 MGP_C3HHeJ_G0025332.1 mouse_genomes_project 2 30298059 30299727 + Prrc2b protein_coding processed_transcript MGP_C3HHeJ_T0059234.1 MGP_C3HHeJ_G0026678.1 mouse_genomes_project 2 178028451 178031136 + MGP_C3HHeJ_P0059234 1700010B08Rik protein_coding protein_coding MGP_C3HHeJ_T0003917.1 MGP_C3HHeJ_G0003491.1 mouse_genomes_project 2 65373852 65378784 + Gm13618 antisense antisense MGP_C3HHeJ_T0054896.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038739 70090085 + MGP_C3HHeJ_P0054896 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054897.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038739 70069571 + MGP_C3HHeJ_P0054897 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054898.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038739 70069553 + MGP_C3HHeJ_P0054898 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054899.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70038753 70067188 + MGP_C3HHeJ_P0054899 Gorasp2 protein_coding protein_coding MGP_C3HHeJ_T0054900.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70039363 70055778 + Gorasp2 protein_coding processed_transcript MGP_C3HHeJ_T0054901.1 MGP_C3HHeJ_G0025547.1 mouse_genomes_project 2 70065640 70069549 + Gorasp2 protein_coding processed_transcript MGP_C3HHeJ_T0056942.1 MGP_C3HHeJ_G0026126.1 mouse_genomes_project 2 123880899 123900998 + MGP_C3HHeJ_P0056942 Trim69 protein_coding protein_coding MGP_C3HHeJ_T0056943.1 MGP_C3HHeJ_G0026126.1 mouse_genomes_project 2 123881001 123900995 + Trim69 protein_coding processed_transcript MGP_C3HHeJ_T0007093.1 MGP_C3HHeJ_G0005812.1 mouse_genomes_project 2 32110867 32117193 - Gm13403 lincRNA lincRNA MGP_C3HHeJ_T0007094.1 MGP_C3HHeJ_G0005812.1 mouse_genomes_project 2 32112974 32117225 - Gm13403 lincRNA lincRNA MGP_C3HHeJ_T0055608.1 MGP_C3HHeJ_G0025833.1 mouse_genomes_project 2 90021668 90026432 - MGP_C3HHeJ_P0055608 Olfr1254 protein_coding protein_coding MGP_C3HHeJ_T0055609.1 MGP_C3HHeJ_G0025833.1 mouse_genomes_project 2 90021668 90022613 - MGP_C3HHeJ_P0055609 Olfr1254 protein_coding protein_coding MGP_C3HHeJ_T0100443.1 MGP_C3HHeJ_G0038637.1 mouse_genomes_project 2 30778686 30778823 + Gm26236 snoRNA snoRNA MGP_C3HHeJ_T0058955.1 MGP_C3HHeJ_G0026611.1 mouse_genomes_project 2 169185244 169193079 - MGP_C3HHeJ_P0058955 Ocstamp protein_coding protein_coding MGP_C3HHeJ_T0054421.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48958038 48975079 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054422.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48958038 48975101 - MGP_C3HHeJ_P0054422 Mmadhc protein_coding protein_coding MGP_C3HHeJ_T0054423.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48958507 48975071 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054424.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48959298 48975065 - MGP_C3HHeJ_P0054424 Mmadhc protein_coding protein_coding MGP_C3HHeJ_T0054425.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48959311 48974807 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054426.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48959323 48967357 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054427.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48966010 48975060 - Mmadhc protein_coding processed_transcript MGP_C3HHeJ_T0054428.1 MGP_C3HHeJ_G0025458.1 mouse_genomes_project 2 48966023 48975185 - MGP_C3HHeJ_P0054428 Mmadhc protein_coding protein_coding MGP_C3HHeJ_T0013639.1 MGP_C3HHeJ_G0011743.1 mouse_genomes_project 2 145827125 145827926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013593.1 MGP_C3HHeJ_G0011697.1 mouse_genomes_project 2 123043641 123043874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013649.1 MGP_C3HHeJ_G0011753.1 mouse_genomes_project 2 148454389 148454701 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013663.1 MGP_C3HHeJ_G0011767.1 mouse_genomes_project 2 152241645 152242364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053858.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30724652 30737954 + MGP_C3HHeJ_P0053858 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053859.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30728331 30737950 + MGP_C3HHeJ_P0053859 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053860.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30728332 30734070 + MGP_C3HHeJ_P0053860 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053861.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30731284 30734033 + MGP_C3HHeJ_P0053861 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053862.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30732398 30737948 + MGP_C3HHeJ_P0053862 Ak1 protein_coding protein_coding MGP_C3HHeJ_T0053863.1 MGP_C3HHeJ_G0025349.1 mouse_genomes_project 2 30732415 30736296 + Ak1 protein_coding retained_intron MGP_C3HHeJ_T0101903.1 MGP_C3HHeJ_G0039868.1 mouse_genomes_project 2 86993124 86994063 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055474.1 MGP_C3HHeJ_G0025722.1 mouse_genomes_project 2 87060594 87061533 - MGP_C3HHeJ_P0055474 Olfr1107 protein_coding protein_coding MGP_C3HHeJ_T0059044.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170938881 170966152 - MGP_C3HHeJ_P0059044 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059045.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170938887 170946584 - MGP_C3HHeJ_P0059045 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059046.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170947114 170963563 - MGP_C3HHeJ_P0059046 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059047.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170947199 170965854 - MGP_C3HHeJ_P0059047 Znfx1 protein_coding protein_coding MGP_C3HHeJ_T0059048.1 MGP_C3HHeJ_G0026625.1 mouse_genomes_project 2 170952167 170965777 - Znfx1 protein_coding retained_intron MGP_C3HHeJ_T0053174.1 MGP_C3HHeJ_G0025245.1 mouse_genomes_project 2 24918988 24937637 + MGP_C3HHeJ_P0053174 Dbh protein_coding protein_coding MGP_C3HHeJ_T0053175.1 MGP_C3HHeJ_G0025245.1 mouse_genomes_project 2 24931529 24931809 + Dbh protein_coding processed_transcript MGP_C3HHeJ_T0056884.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123082918 123100209 - MGP_C3HHeJ_P0056884 Serinc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056892.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095676 123101160 - MGP_C3HHeJ_P0056892 Serinc4 protein_coding protein_coding MGP_C3HHeJ_T0056893.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095676 123101072 - MGP_C3HHeJ_P0056893 Serinc4 protein_coding protein_coding MGP_C3HHeJ_T0056894.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095688 123100209 - MGP_C3HHeJ_P0056894 Serinc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056895.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123095746 123100203 - MGP_C3HHeJ_P0056895 Serinc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056896.1 MGP_C3HHeJ_G0026113.1 mouse_genomes_project 2 123096505 123098105 - Serinc4 protein_coding retained_intron MGP_C3HHeJ_T0052937.1 MGP_C3HHeJ_G0025201.1 mouse_genomes_project 2 23397972 23398955 + MGP_C3HHeJ_P0052937 Bmyc protein_coding protein_coding MGP_C3HHeJ_T0059597.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304794 186310222 - MGP_C3HHeJ_P0059597 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059598.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304800 186305863 - MGP_C3HHeJ_P0059598 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059599.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304803 186310242 - MGP_C3HHeJ_P0059599 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059600.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304885 186308139 - MGP_C3HHeJ_P0059600 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059601.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186304888 186310252 - MGP_C3HHeJ_P0059601 Rgs19 protein_coding protein_coding MGP_C3HHeJ_T0059602.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186305697 186309953 - Rgs19 protein_coding processed_transcript MGP_C3HHeJ_T0059603.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186305782 186310271 - Rgs19 protein_coding processed_transcript MGP_C3HHeJ_T0059604.1 MGP_C3HHeJ_G0026750.1 mouse_genomes_project 2 186306024 186310229 - Rgs19 protein_coding processed_transcript MGP_C3HHeJ_T0056257.1 MGP_C3HHeJ_G0025956.1 mouse_genomes_project 2 107929727 107933229 - MGP_C3HHeJ_P0056257 Fshb protein_coding protein_coding MGP_C3HHeJ_T0054050.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33067299 33088662 - MGP_C3HHeJ_P0054050 Psmd5 protein_coding protein_coding MGP_C3HHeJ_T0054051.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33069671 33088633 - Psmd5 protein_coding retained_intron MGP_C3HHeJ_T0054052.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33070012 33075261 - MGP_C3HHeJ_P0054052 Psmd5 protein_coding protein_coding MGP_C3HHeJ_T0054053.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33084638 33092668 - Psmd5 protein_coding processed_transcript MGP_C3HHeJ_T0054054.1 MGP_C3HHeJ_G0025377.1 mouse_genomes_project 2 33088807 33089910 - Psmd5 protein_coding processed_transcript MGP_C3HHeJ_T0003992.1 MGP_C3HHeJ_G0003537.1 mouse_genomes_project 2 118232368 118264419 - Gm13990 antisense antisense MGP_C3HHeJ_T0010346.1 MGP_C3HHeJ_G0008479.1 mouse_genomes_project 2 92816225 92816288 - Mir7000 miRNA miRNA MGP_C3HHeJ_T0052744.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22894328 22904891 - MGP_C3HHeJ_P0052744 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052745.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22894370 22904894 - MGP_C3HHeJ_P0052745 Ndor1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052746.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22895077 22897494 - Ndor1 protein_coding processed_transcript MGP_C3HHeJ_T0052747.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22896736 22904917 - MGP_C3HHeJ_P0052747 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052748.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22896935 22904894 - MGP_C3HHeJ_P0052748 Ndor1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052749.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22897094 22897979 - Ndor1 protein_coding retained_intron MGP_C3HHeJ_T0052750.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22898979 22904854 - MGP_C3HHeJ_P0052750 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052751.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22899007 22899850 - Ndor1 protein_coding retained_intron MGP_C3HHeJ_T0052752.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22899631 22904924 - MGP_C3HHeJ_P0052752 Ndor1 protein_coding protein_coding MGP_C3HHeJ_T0052753.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22899682 22904876 - Ndor1 protein_coding processed_transcript MGP_C3HHeJ_T0052754.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22900995 22904769 - Ndor1 protein_coding retained_intron MGP_C3HHeJ_T0052755.1 MGP_C3HHeJ_G0025165.1 mouse_genomes_project 2 22901255 22905530 - MGP_C3HHeJ_P0052755 Ndor1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056191.1 MGP_C3HHeJ_G0025943.1 mouse_genomes_project 2 105530954 105592777 - MGP_C3HHeJ_P0056191 Qser1 protein_coding protein_coding MGP_C3HHeJ_T0010395.1 MGP_C3HHeJ_G0008528.1 mouse_genomes_project 2 169732635 169732740 - Gm22692 miRNA miRNA MGP_C3HHeJ_T0058031.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167098 156183712 + Ccm2l protein_coding processed_transcript MGP_C3HHeJ_T0058032.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167127 156172240 + Ccm2l protein_coding processed_transcript MGP_C3HHeJ_T0058033.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167141 156172051 + MGP_C3HHeJ_P0058033 Ccm2l protein_coding protein_coding MGP_C3HHeJ_T0058034.1 MGP_C3HHeJ_G0026404.1 mouse_genomes_project 2 156167150 156183176 + MGP_C3HHeJ_P0058034 Ccm2l protein_coding protein_coding MGP_C3HHeJ_T0003932.1 MGP_C3HHeJ_G0003501.1 mouse_genomes_project 2 71685001 71692621 - Rapgef4os2 antisense antisense MGP_C3HHeJ_T0007298.1 MGP_C3HHeJ_G0005979.1 mouse_genomes_project 2 166504970 166506928 - lincRNA lincRNA MGP_C3HHeJ_T0013594.1 MGP_C3HHeJ_G0011698.1 mouse_genomes_project 2 123377781 123378741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017675.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161822151 161825295 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017676.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161823758 161829962 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017677.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824216 161829974 - Snhg17 processed_transcript retained_intron MGP_C3HHeJ_T0017678.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824216 161829971 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017679.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824216 161830032 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017680.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824236 161829965 - Snhg17 processed_transcript retained_intron MGP_C3HHeJ_T0017681.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161824473 161826915 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017682.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161827689 161829927 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0017683.1 MGP_C3HHeJ_G0015247.1 mouse_genomes_project 2 161829318 161829994 - Snhg17 processed_transcript lincRNA MGP_C3HHeJ_T0054878.1 MGP_C3HHeJ_G0025542.1 mouse_genomes_project 2 69399111 69791484 + MGP_C3HHeJ_P0054878 Myo3b protein_coding protein_coding MGP_C3HHeJ_T0054879.1 MGP_C3HHeJ_G0025542.1 mouse_genomes_project 2 69445738 69791487 + MGP_C3HHeJ_P0054879 Myo3b protein_coding protein_coding MGP_C3HHeJ_T0054880.1 MGP_C3HHeJ_G0025542.1 mouse_genomes_project 2 69458861 69545181 + MGP_C3HHeJ_P0054880 Myo3b protein_coding protein_coding MGP_C3HHeJ_T0056312.1 MGP_C3HHeJ_G0025972.1 mouse_genomes_project 2 112198732 112199671 - MGP_C3HHeJ_P0056312 Olfr1275 protein_coding protein_coding MGP_C3HHeJ_T0059273.1 MGP_C3HHeJ_G0026685.1 mouse_genomes_project 2 178761001 178772638 - MGP_C3HHeJ_P0059273 Ctsz protein_coding protein_coding MGP_C3HHeJ_T0057799.1 MGP_C3HHeJ_G0026327.1 mouse_genomes_project 2 151294704 151302121 - MGP_C3HHeJ_P0057799 Cd93 protein_coding protein_coding MGP_C3HHeJ_T0004064.1 MGP_C3HHeJ_G0003592.1 mouse_genomes_project 2 158879795 158882430 + Gssos1 antisense antisense MGP_C3HHeJ_T0004048.1 MGP_C3HHeJ_G0003578.1 mouse_genomes_project 2 149995973 149996965 + 6430503K07Rik antisense antisense MGP_C3HHeJ_T0017665.1 MGP_C3HHeJ_G0015242.1 mouse_genomes_project 2 156465518 156470166 - 2500004C02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017666.1 MGP_C3HHeJ_G0015242.1 mouse_genomes_project 2 156466877 156467584 - 2500004C02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017667.1 MGP_C3HHeJ_G0015242.1 mouse_genomes_project 2 156466997 156470429 - 2500004C02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010342.1 MGP_C3HHeJ_G0008475.1 mouse_genomes_project 2 84487338 84487402 - Mir130a miRNA miRNA MGP_C3HHeJ_T0052889.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243129 23247365 + MGP_C3HHeJ_P0052889 Edf1 protein_coding protein_coding MGP_C3HHeJ_T0052890.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243153 23246644 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0052891.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243179 23246547 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0052892.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23243421 23247144 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0052893.1 MGP_C3HHeJ_G0025188.1 mouse_genomes_project 2 23245867 23247365 + Edf1 protein_coding processed_transcript MGP_C3HHeJ_T0055523.1 MGP_C3HHeJ_G0025761.1 mouse_genomes_project 2 88037642 88038587 - MGP_C3HHeJ_P0055523 Olfr1155 protein_coding protein_coding MGP_C3HHeJ_T0057813.1 MGP_C3HHeJ_G0026334.1 mouse_genomes_project 2 151645645 151649711 + MGP_C3HHeJ_P0057813 Cst12 protein_coding protein_coding MGP_C3HHeJ_T0057814.1 MGP_C3HHeJ_G0026334.1 mouse_genomes_project 2 151645656 151649820 + MGP_C3HHeJ_P0057814 Cst12 protein_coding protein_coding MGP_C3HHeJ_T0007180.1 MGP_C3HHeJ_G0005885.1 mouse_genomes_project 2 93545029 93557138 - Gm13802 lincRNA lincRNA MGP_C3HHeJ_T0059323.1 MGP_C3HHeJ_G0026700.1 mouse_genomes_project 2 184589096 184614730 + MGP_C3HHeJ_P0059323 Ss18l1 protein_coding protein_coding MGP_C3HHeJ_T0059264.1 MGP_C3HHeJ_G0026683.1 mouse_genomes_project 2 178659879 178677300 - MGP_C3HHeJ_P0059264 Gm20721 protein_coding protein_coding MGP_C3HHeJ_T0010382.1 MGP_C3HHeJ_G0008515.1 mouse_genomes_project 2 155859801 155859886 - Gm23802 miRNA miRNA MGP_C3HHeJ_T0054069.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33203573 33286741 - MGP_C3HHeJ_P0054069 Hc protein_coding protein_coding MGP_C3HHeJ_T0054070.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33203945 33242371 - MGP_C3HHeJ_P0054070 Hc protein_coding protein_coding MGP_C3HHeJ_T0054071.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33212754 33216110 - Hc protein_coding processed_transcript MGP_C3HHeJ_T0054072.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33212848 33223577 - Hc protein_coding retained_intron MGP_C3HHeJ_T0054073.1 MGP_C3HHeJ_G0025381.1 mouse_genomes_project 2 33217729 33229053 - Hc protein_coding processed_transcript MGP_C3HHeJ_T0003941.1 MGP_C3HHeJ_G0003507.1 mouse_genomes_project 2 73102708 73107072 + Chrna1os antisense antisense MGP_C3HHeJ_T0003942.1 MGP_C3HHeJ_G0003507.1 mouse_genomes_project 2 73102718 73107093 + Chrna1os antisense antisense MGP_C3HHeJ_T0053149.1 MGP_C3HHeJ_G0025239.1 mouse_genomes_project 2 24728994 24753998 + MGP_C3HHeJ_P0053149 Adamts13 protein_coding protein_coding MGP_C3HHeJ_T0053150.1 MGP_C3HHeJ_G0025239.1 mouse_genomes_project 2 24729071 24761192 + MGP_C3HHeJ_P0053150 Adamts13 protein_coding protein_coding MGP_C3HHeJ_T0053151.1 MGP_C3HHeJ_G0025239.1 mouse_genomes_project 2 24756350 24761009 + Adamts13 protein_coding processed_transcript MGP_C3HHeJ_T0055571.1 MGP_C3HHeJ_G0025805.1 mouse_genomes_project 2 89223032 89235959 - MGP_C3HHeJ_P0055571 Olfr1219 protein_coding protein_coding MGP_C3HHeJ_T0055472.1 MGP_C3HHeJ_G0025720.1 mouse_genomes_project 2 87020085 87021024 - MGP_C3HHeJ_P0055472 Olfr1105 protein_coding protein_coding MGP_C3HHeJ_T0052942.1 MGP_C3HHeJ_G0025205.1 mouse_genomes_project 2 23482188 23502203 - MGP_C3HHeJ_P0052942 Glt6d1 protein_coding protein_coding MGP_C3HHeJ_T0052943.1 MGP_C3HHeJ_G0025205.1 mouse_genomes_project 2 23483543 23502186 - Glt6d1 protein_coding processed_transcript MGP_C3HHeJ_T0053693.1 MGP_C3HHeJ_G0025327.1 mouse_genomes_project 2 29930688 30000185 + MGP_C3HHeJ_P0053693 Lamc3 protein_coding protein_coding MGP_C3HHeJ_T0053694.1 MGP_C3HHeJ_G0025327.1 mouse_genomes_project 2 29930741 30001478 + MGP_C3HHeJ_P0053694 Lamc3 protein_coding protein_coding MGP_C3HHeJ_T0053695.1 MGP_C3HHeJ_G0025327.1 mouse_genomes_project 2 29979130 29979769 + Lamc3 protein_coding processed_transcript MGP_C3HHeJ_T0010323.1 MGP_C3HHeJ_G0008456.1 mouse_genomes_project 2 36531792 36531874 - Gm44455 miRNA miRNA MGP_C3HHeJ_T0055121.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014529 76015953 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0055122.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014559 76202497 + MGP_C3HHeJ_P0055122 Osbpl6 protein_coding protein_coding MGP_C3HHeJ_T0055123.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014559 76202501 + MGP_C3HHeJ_P0055123 Osbpl6 protein_coding protein_coding MGP_C3HHeJ_T0055124.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014579 76198450 + MGP_C3HHeJ_P0055124 Osbpl6 protein_coding protein_coding MGP_C3HHeJ_T0055125.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76014582 76015489 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0055126.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76100186 76142544 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0055127.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76149317 76197899 + MGP_C3HHeJ_P0055127 Osbpl6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055128.1 MGP_C3HHeJ_G0025597.1 mouse_genomes_project 2 76169097 76181052 + Osbpl6 protein_coding processed_transcript MGP_C3HHeJ_T0052938.1 MGP_C3HHeJ_G0025202.1 mouse_genomes_project 2 23423352 23426424 + MGP_C3HHeJ_P0052938 Obp2b protein_coding protein_coding MGP_C3HHeJ_T0052939.1 MGP_C3HHeJ_G0025202.1 mouse_genomes_project 2 23424359 23426459 + MGP_C3HHeJ_P0052939 Obp2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0055413.1 MGP_C3HHeJ_G0025664.1 mouse_genomes_project 2 85484278 85485220 + MGP_C3HHeJ_P0055413 Olfr1008 protein_coding protein_coding MGP_C3HHeJ_T0056336.1 MGP_C3HHeJ_G0025996.1 mouse_genomes_project 2 113222095 113223034 - MGP_C3HHeJ_P0056336 protein_coding protein_coding MGP_C3HHeJ_T0003893.1 MGP_C3HHeJ_G0003473.1 mouse_genomes_project 2 36674012 36678413 - Gm13584 antisense antisense MGP_C3HHeJ_T0001014.1 MGP_C3HHeJ_G0000951.1 mouse_genomes_project 2 11496588 11500060 + TEC TEC MGP_C3HHeJ_T0057882.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522876 154547660 + MGP_C3HHeJ_P0057882 Nsfl1c protein_coding protein_coding MGP_C3HHeJ_T0057883.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522883 154543322 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057884.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522984 154537454 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057885.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522987 154547655 + MGP_C3HHeJ_P0057885 Nsfl1c protein_coding protein_coding MGP_C3HHeJ_T0057886.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154522998 154547764 + MGP_C3HHeJ_P0057886 Nsfl1c protein_coding protein_coding MGP_C3HHeJ_T0057887.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154523005 154539640 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057888.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154538543 154546012 + Nsfl1c protein_coding processed_transcript MGP_C3HHeJ_T0057889.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154539196 154547339 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057890.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154539953 154546042 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0057891.1 MGP_C3HHeJ_G0026357.1 mouse_genomes_project 2 154545449 154547612 + Nsfl1c protein_coding retained_intron MGP_C3HHeJ_T0056296.1 MGP_C3HHeJ_G0025965.1 mouse_genomes_project 2 111327821 111330096 - MGP_C3HHeJ_P0056296 Fibin protein_coding protein_coding MGP_C3HHeJ_T0007185.1 MGP_C3HHeJ_G0005887.1 mouse_genomes_project 2 94737253 94750089 - lincRNA lincRNA MGP_C3HHeJ_T0007186.1 MGP_C3HHeJ_G0005887.1 mouse_genomes_project 2 94746359 94750108 - lincRNA lincRNA MGP_C3HHeJ_T0059618.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186377269 186445797 + MGP_C3HHeJ_P0059618 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059619.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186377333 186444043 + MGP_C3HHeJ_P0059619 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059620.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186380969 186411896 + Myt1 protein_coding processed_transcript MGP_C3HHeJ_T0059621.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186381243 186421820 + MGP_C3HHeJ_P0059621 Myt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059622.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186398503 186432416 + MGP_C3HHeJ_P0059622 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059623.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186412310 186445732 + Myt1 protein_coding retained_intron MGP_C3HHeJ_T0059624.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186413601 186423351 + Myt1 protein_coding processed_transcript MGP_C3HHeJ_T0059625.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186428008 186436909 + MGP_C3HHeJ_P0059625 Myt1 protein_coding protein_coding MGP_C3HHeJ_T0059626.1 MGP_C3HHeJ_G0026753.1 mouse_genomes_project 2 186436368 186438807 + Myt1 protein_coding retained_intron MGP_C3HHeJ_T0007213.1 MGP_C3HHeJ_G0005911.1 mouse_genomes_project 2 116671424 116683169 - 4930528P14Rik lincRNA lincRNA MGP_C3HHeJ_T0055559.1 MGP_C3HHeJ_G0025795.1 mouse_genomes_project 2 88984789 88985578 + MGP_C3HHeJ_P0055559 protein_coding protein_coding MGP_C3HHeJ_T0007333.1 MGP_C3HHeJ_G0006009.1 mouse_genomes_project 2 173713112 173977631 - lincRNA lincRNA MGP_C3HHeJ_T0007334.1 MGP_C3HHeJ_G0006009.1 mouse_genomes_project 2 173713142 173977631 - lincRNA lincRNA MGP_C3HHeJ_T0057625.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142685534 142742113 - MGP_C3HHeJ_P0057625 Esf1 protein_coding protein_coding MGP_C3HHeJ_T0057626.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142717680 142724212 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0057628.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142725792 142730369 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0057629.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142725827 142727750 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0057630.1 MGP_C3HHeJ_G0026286.1 mouse_genomes_project 2 142729248 142730369 - Esf1 protein_coding retained_intron MGP_C3HHeJ_T0098285.1 MGP_C3HHeJ_G0036497.1 mouse_genomes_project 2 175463725 175463989 - Gm26489 scaRNA scaRNA MGP_C3HHeJ_T0054525.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57201915 57294481 - MGP_C3HHeJ_P0054525 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0054526.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57201915 57294481 - MGP_C3HHeJ_P0054526 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0054527.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57202098 57294409 - MGP_C3HHeJ_P0054527 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0054528.1 MGP_C3HHeJ_G0025480.1 mouse_genomes_project 2 57229140 57259312 - MGP_C3HHeJ_P0054528 Acvr1c protein_coding protein_coding MGP_C3HHeJ_T0013390.1 MGP_C3HHeJ_G0011494.1 mouse_genomes_project 2 49358273 49358685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007264.1 MGP_C3HHeJ_G0005951.1 mouse_genomes_project 2 149624201 149635559 - Gm14114 lincRNA lincRNA MGP_C3HHeJ_T0054503.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 55997240 56005225 - MGP_C3HHeJ_P0054503 Nr4a2 protein_coding protein_coding MGP_C3HHeJ_T0054504.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 55997244 56015224 - MGP_C3HHeJ_P0054504 Nr4a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054505.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 56002422 56005478 - Nr4a2 protein_coding processed_transcript MGP_C3HHeJ_T0054506.1 MGP_C3HHeJ_G0025475.1 mouse_genomes_project 2 56003411 56004813 - Nr4a2 protein_coding processed_transcript MGP_C3HHeJ_T0057234.1 MGP_C3HHeJ_G0026197.1 mouse_genomes_project 2 131045338 131065067 - MGP_C3HHeJ_P0057234 Zc3h8 protein_coding protein_coding MGP_C3HHeJ_T0057931.1 MGP_C3HHeJ_G0026368.1 mouse_genomes_project 2 155138939 155153157 + MGP_C3HHeJ_P0057931 Scrt2 protein_coding protein_coding MGP_C3HHeJ_T0057479.1 MGP_C3HHeJ_G0026254.1 mouse_genomes_project 2 134165223 134201183 + MGP_C3HHeJ_P0057479 protein_coding protein_coding MGP_C3HHeJ_T0057480.1 MGP_C3HHeJ_G0026254.1 mouse_genomes_project 2 134165223 134201183 + MGP_C3HHeJ_P0057480 protein_coding protein_coding MGP_C3HHeJ_T0013473.1 MGP_C3HHeJ_G0011577.1 mouse_genomes_project 2 78690155 78690606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058209.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158650721 158657173 + MGP_C3HHeJ_P0058209 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0058210.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652149 158660892 + MGP_C3HHeJ_P0058210 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0058211.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652175 158657797 + MGP_C3HHeJ_P0058211 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0058212.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652195 158657072 + Trp53inp2 protein_coding retained_intron MGP_C3HHeJ_T0058213.1 MGP_C3HHeJ_G0026451.1 mouse_genomes_project 2 158652537 158657084 + MGP_C3HHeJ_P0058213 Trp53inp2 protein_coding protein_coding MGP_C3HHeJ_T0013272.1 MGP_C3HHeJ_G0011376.1 mouse_genomes_project 2 2317734 2317959 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058793.1 MGP_C3HHeJ_G0026570.1 mouse_genomes_project 2 168184959 168215191 + MGP_C3HHeJ_P0058793 Gm20458 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011415.1 MGP_C3HHeJ_G0009548.1 mouse_genomes_project 2 118357477 118357790 + Gm24914 misc_RNA misc_RNA MGP_C3HHeJ_T0003863.1 MGP_C3HHeJ_G0003448.1 mouse_genomes_project 2 25085740 25090334 + AA645442 antisense antisense MGP_C3HHeJ_T0058861.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594552 168602554 + MGP_C3HHeJ_P0058861 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058862.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594552 168601464 + MGP_C3HHeJ_P0058862 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058863.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594566 168595439 + Ctsa protein_coding processed_transcript MGP_C3HHeJ_T0058864.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594580 168602554 + MGP_C3HHeJ_P0058864 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058865.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594588 168595742 + MGP_C3HHeJ_P0058865 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058866.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594605 168595459 + Ctsa protein_coding processed_transcript MGP_C3HHeJ_T0058867.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168594605 168597371 + MGP_C3HHeJ_P0058867 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058868.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595486 168596101 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058869.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595494 168598468 + MGP_C3HHeJ_P0058869 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058870.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595526 168596554 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058871.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595537 168597943 + MGP_C3HHeJ_P0058871 Ctsa protein_coding protein_coding MGP_C3HHeJ_T0058872.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595709 168596873 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058873.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595709 168598501 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058874.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595752 168597938 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0058875.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168595989 168597401 + Ctsa protein_coding processed_transcript MGP_C3HHeJ_T0058876.1 MGP_C3HHeJ_G0026597.1 mouse_genomes_project 2 168596152 168597149 + Ctsa protein_coding retained_intron MGP_C3HHeJ_T0004079.1 MGP_C3HHeJ_G0003606.1 mouse_genomes_project 2 167183697 167226427 - Hnf4aos antisense antisense MGP_C3HHeJ_T0004080.1 MGP_C3HHeJ_G0003606.1 mouse_genomes_project 2 167183697 167226427 - Hnf4aos antisense antisense MGP_C3HHeJ_T0004081.1 MGP_C3HHeJ_G0003606.1 mouse_genomes_project 2 167184084 167226399 - Hnf4aos antisense antisense MGP_C3HHeJ_T0007247.1 MGP_C3HHeJ_G0005936.1 mouse_genomes_project 2 134740669 134758610 - Gm14095 lincRNA lincRNA MGP_C3HHeJ_T0013641.1 MGP_C3HHeJ_G0011745.1 mouse_genomes_project 2 146539312 146539740 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013494.1 MGP_C3HHeJ_G0011598.1 mouse_genomes_project 2 85542704 85543636 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010249.1 MGP_C3HHeJ_G0008382.1 mouse_genomes_project 2 7688554 7688675 + Gm22072 miRNA miRNA MGP_C3HHeJ_T0055431.1 MGP_C3HHeJ_G0025681.1 mouse_genomes_project 2 85921791 85926454 + MGP_C3HHeJ_P0055431 Olfr1036 protein_coding protein_coding MGP_C3HHeJ_T0004104.1 MGP_C3HHeJ_G0003624.1 mouse_genomes_project 2 176224557 176228152 + Gm14271 antisense antisense MGP_C3HHeJ_T0003921.1 MGP_C3HHeJ_G0003494.1 mouse_genomes_project 2 66716109 66742339 - Gm13601 antisense antisense MGP_C3HHeJ_T0057714.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280070 147293855 + MGP_C3HHeJ_P0057714 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057715.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280097 147318660 + MGP_C3HHeJ_P0057715 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057716.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280122 147284045 + MGP_C3HHeJ_P0057716 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057717.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280153 147284154 + Sec23b protein_coding processed_transcript MGP_C3HHeJ_T0057718.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280160 147292638 + MGP_C3HHeJ_P0057718 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057719.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147280175 147290480 + MGP_C3HHeJ_P0057719 Sec23b protein_coding protein_coding MGP_C3HHeJ_T0057720.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147290726 147318660 + Sec23b protein_coding processed_transcript MGP_C3HHeJ_T0057721.1 MGP_C3HHeJ_G0026308.1 mouse_genomes_project 2 147302950 147308005 + Sec23b protein_coding processed_transcript MGP_C3HHeJ_T0101875.1 MGP_C3HHeJ_G0039840.1 mouse_genomes_project 2 33053697 33054462 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0057288.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132332377 132340237 - Snrpb protein_coding retained_intron MGP_C3HHeJ_T0057289.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132332598 132340337 - MGP_C3HHeJ_P0057289 Snrpb protein_coding protein_coding MGP_C3HHeJ_T0057290.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132332751 132340337 - MGP_C3HHeJ_P0057290 Snrpb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057291.1 MGP_C3HHeJ_G0026214.1 mouse_genomes_project 2 132337787 132340268 - Snrpb protein_coding retained_intron MGP_C3HHeJ_T0013262.1 MGP_C3HHeJ_G0011366.1 mouse_genomes_project 2 24647 25163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013286.1 MGP_C3HHeJ_G0011390.1 mouse_genomes_project 2 12075051 12075386 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013379.1 MGP_C3HHeJ_G0011483.1 mouse_genomes_project 2 44970452 44970802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057384.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133111569 133238526 + MGP_C3HHeJ_P0057384 Atrn protein_coding protein_coding MGP_C3HHeJ_T0057385.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133111575 133213842 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0057386.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133112005 133143283 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0057387.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133191123 133202915 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0057388.1 MGP_C3HHeJ_G0026236.1 mouse_genomes_project 2 133204520 133213874 + Atrn protein_coding retained_intron MGP_C3HHeJ_T0099173.1 MGP_C3HHeJ_G0037367.1 mouse_genomes_project 2 2296958 2297145 - Gm23118 snRNA snRNA MGP_C3HHeJ_T0010390.1 MGP_C3HHeJ_G0008523.1 mouse_genomes_project 2 162236816 162236942 + Gm26141 miRNA miRNA MGP_C3HHeJ_T0013354.1 MGP_C3HHeJ_G0011458.1 mouse_genomes_project 2 35494214 35495237 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055501.1 MGP_C3HHeJ_G0025741.1 mouse_genomes_project 2 87677883 87684656 + MGP_C3HHeJ_P0055501 Olfr1130 protein_coding protein_coding MGP_C3HHeJ_T0010282.1 MGP_C3HHeJ_G0008415.1 mouse_genomes_project 2 7718711 7718813 + Mir297a-3 miRNA miRNA MGP_C3HHeJ_T0099180.1 MGP_C3HHeJ_G0037374.1 mouse_genomes_project 2 22857208 22857313 + Gm22572 snRNA snRNA MGP_C3HHeJ_T0053224.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26269457 26272957 + Ppp1r26 protein_coding processed_transcript MGP_C3HHeJ_T0053225.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26269523 26273281 + Ppp1r26 protein_coding processed_transcript MGP_C3HHeJ_T0053226.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26270595 26273117 + Ppp1r26 protein_coding processed_transcript MGP_C3HHeJ_T0053227.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26270595 26277943 + MGP_C3HHeJ_P0053227 Ppp1r26 protein_coding protein_coding MGP_C3HHeJ_T0053228.1 MGP_C3HHeJ_G0025254.1 mouse_genomes_project 2 26270595 26277940 + MGP_C3HHeJ_P0053228 Ppp1r26 protein_coding protein_coding MGP_C3HHeJ_T0058774.1 MGP_C3HHeJ_G0026563.1 mouse_genomes_project 2 168033232 168034933 + MGP_C3HHeJ_P0058774 Svs6 protein_coding protein_coding MGP_C3HHeJ_T0011403.1 MGP_C3HHeJ_G0009536.1 mouse_genomes_project 2 43805434 43805635 + Vis1 misc_RNA misc_RNA MGP_C3HHeJ_T0013558.1 MGP_C3HHeJ_G0011662.1 mouse_genomes_project 2 107100624 107100894 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058456.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160111684 160119781 + MGP_C3HHeJ_P0058456 Myl9 protein_coding protein_coding MGP_C3HHeJ_T0058457.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160111718 160119484 + Myl9 protein_coding processed_transcript MGP_C3HHeJ_T0058458.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160111721 160118657 + Myl9 protein_coding processed_transcript MGP_C3HHeJ_T0058459.1 MGP_C3HHeJ_G0026485.1 mouse_genomes_project 2 160116639 160119287 + Myl9 protein_coding processed_transcript MGP_C3HHeJ_T0007275.1 MGP_C3HHeJ_G0005959.1 mouse_genomes_project 2 153705398 153707880 - Gm26681 lincRNA lincRNA MGP_C3HHeJ_T0017564.1 MGP_C3HHeJ_G0015189.1 mouse_genomes_project 2 71195599 71198281 + Gm13663 processed_transcript processed_transcript MGP_C3HHeJ_T0017565.1 MGP_C3HHeJ_G0015189.1 mouse_genomes_project 2 71196559 71198241 + Gm13663 processed_transcript processed_transcript MGP_C3HHeJ_T0007239.1 MGP_C3HHeJ_G0005930.1 mouse_genomes_project 2 128532760 128564465 - Gm26697 lincRNA lincRNA MGP_C3HHeJ_T0056572.1 MGP_C3HHeJ_G0026063.1 mouse_genomes_project 2 120897796 121009752 - MGP_C3HHeJ_P0056572 Ino80 protein_coding protein_coding MGP_C3HHeJ_T0056573.1 MGP_C3HHeJ_G0026063.1 mouse_genomes_project 2 120926543 121009678 - MGP_C3HHeJ_P0056573 Ino80 protein_coding protein_coding MGP_C3HHeJ_T0056574.1 MGP_C3HHeJ_G0026063.1 mouse_genomes_project 2 120959125 120965520 - Ino80 protein_coding retained_intron MGP_C3HHeJ_T0007260.1 MGP_C3HHeJ_G0005948.1 mouse_genomes_project 2 141055983 141115241 + Gm14061 lincRNA lincRNA MGP_C3HHeJ_T0007115.1 MGP_C3HHeJ_G0005829.1 mouse_genomes_project 2 49245586 49249931 + Gm13485 lincRNA lincRNA MGP_C3HHeJ_T0058486.1 MGP_C3HHeJ_G0026491.1 mouse_genomes_project 2 160390359 160454469 - MGP_C3HHeJ_P0058486 Soga1 protein_coding protein_coding MGP_C3HHeJ_T0058487.1 MGP_C3HHeJ_G0026491.1 mouse_genomes_project 2 160395430 160402252 - Soga1 protein_coding processed_transcript MGP_C3HHeJ_T0058488.1 MGP_C3HHeJ_G0026491.1 mouse_genomes_project 2 160412369 160415545 - Soga1 protein_coding processed_transcript MGP_C3HHeJ_T0052146.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586943 4485222 - MGP_C3HHeJ_P0052146 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052147.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586954 3781097 - MGP_C3HHeJ_P0052147 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052148.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586954 3949050 - MGP_C3HHeJ_P0052148 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052149.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3586954 3949050 - MGP_C3HHeJ_P0052149 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052150.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3589134 3949050 - MGP_C3HHeJ_P0052150 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052151.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3590740 4153349 - MGP_C3HHeJ_P0052151 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052152.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592118 3949001 - MGP_C3HHeJ_P0052152 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052153.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592152 4153289 - MGP_C3HHeJ_P0052153 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052154.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592152 3781097 - MGP_C3HHeJ_P0052154 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052155.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3592946 3781410 - MGP_C3HHeJ_P0052155 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052156.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3593551 3781095 - MGP_C3HHeJ_P0052156 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052157.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3593551 3781095 - MGP_C3HHeJ_P0052157 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052158.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3593686 3949000 - MGP_C3HHeJ_P0052158 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052159.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3594229 3936652 - MGP_C3HHeJ_P0052159 Celf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052160.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3594242 3643361 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052161.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3601259 4485115 - MGP_C3HHeJ_P0052161 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052162.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3633786 3781097 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052163.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3654792 3667609 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052164.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3658386 3948682 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052165.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3667157 4485420 - MGP_C3HHeJ_P0052165 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052166.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3671667 3948946 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052167.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3674956 3781698 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052168.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3676132 3936027 - MGP_C3HHeJ_P0052168 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052169.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3715071 3948946 - Celf2 protein_coding retained_intron MGP_C3HHeJ_T0052170.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3718781 4153254 - MGP_C3HHeJ_P0052170 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052171.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 3780937 3781691 - MGP_C3HHeJ_P0052171 Celf2 protein_coding protein_coding MGP_C3HHeJ_T0052172.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 4148143 4153360 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0052173.1 MGP_C3HHeJ_G0025065.1 mouse_genomes_project 2 4483297 4583132 - Celf2 protein_coding processed_transcript MGP_C3HHeJ_T0057932.1 MGP_C3HHeJ_G0026369.1 mouse_genomes_project 2 155165026 155168841 + Srxn1 protein_coding processed_transcript MGP_C3HHeJ_T0057933.1 MGP_C3HHeJ_G0026369.1 mouse_genomes_project 2 155165026 155168730 + Srxn1 protein_coding processed_transcript MGP_C3HHeJ_T0057934.1 MGP_C3HHeJ_G0026369.1 mouse_genomes_project 2 155165034 155170895 + MGP_C3HHeJ_P0057934 Srxn1 protein_coding protein_coding MGP_C3HHeJ_T0055614.1 MGP_C3HHeJ_G0025837.1 mouse_genomes_project 2 90078050 90078956 - MGP_C3HHeJ_P0055614 Olfr48 protein_coding protein_coding MGP_C3HHeJ_T0056708.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122113969 122147991 - MGP_C3HHeJ_P0056708 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056709.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122114443 122174352 - MGP_C3HHeJ_P0056709 Zfp106 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056710.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122114686 122121354 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056711.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122127373 122129132 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056712.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122131300 122133227 - MGP_C3HHeJ_P0056712 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056713.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122134877 122174399 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056714.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122135340 122137140 - Zfp106 protein_coding retained_intron MGP_C3HHeJ_T0056715.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122136964 122140680 - MGP_C3HHeJ_P0056715 Zfp106 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056716.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122140507 122174428 - MGP_C3HHeJ_P0056716 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056717.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122143732 122163635 - MGP_C3HHeJ_P0056717 Zfp106 protein_coding protein_coding MGP_C3HHeJ_T0056718.1 MGP_C3HHeJ_G0026088.1 mouse_genomes_project 2 122143865 122174419 - Zfp106 protein_coding processed_transcript MGP_C3HHeJ_T0055317.1 MGP_C3HHeJ_G0025631.1 mouse_genomes_project 2 84340455 84420579 - MGP_C3HHeJ_P0055317 protein_coding protein_coding MGP_C3HHeJ_T0054181.1 MGP_C3HHeJ_G0025409.1 mouse_genomes_project 2 35092091 35093033 - MGP_C3HHeJ_P0054181 Olfr3 protein_coding protein_coding MGP_C3HHeJ_T0101883.1 MGP_C3HHeJ_G0039848.1 mouse_genomes_project 2 35402772 35403026 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056968.1 MGP_C3HHeJ_G0026134.1 mouse_genomes_project 2 124212592 124251000 + protein_coding retained_intron MGP_C3HHeJ_T0058150.1 MGP_C3HHeJ_G0026436.1 mouse_genomes_project 2 157762462 157763963 + MGP_C3HHeJ_P0058150 Actl10 protein_coding protein_coding MGP_C3HHeJ_T0056476.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120162183 120198006 + MGP_C3HHeJ_P0056476 Pak6 protein_coding protein_coding MGP_C3HHeJ_T0056477.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120162642 120163834 + Pak6 protein_coding retained_intron MGP_C3HHeJ_T0056478.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120162944 120176533 + Pak6 protein_coding processed_transcript MGP_C3HHeJ_T0056479.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120175991 120198004 + MGP_C3HHeJ_P0056479 Pak6 protein_coding protein_coding MGP_C3HHeJ_T0056480.1 MGP_C3HHeJ_G0026038.1 mouse_genomes_project 2 120176025 120197213 + Pak6 protein_coding retained_intron MGP_C3HHeJ_T0058565.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161563885 161595698 - MGP_C3HHeJ_P0058565 Tgm2 protein_coding protein_coding MGP_C3HHeJ_T0058566.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161575770 161595655 - MGP_C3HHeJ_P0058566 Tgm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058567.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161578806 161595628 - Tgm2 protein_coding retained_intron MGP_C3HHeJ_T0058568.1 MGP_C3HHeJ_G0026506.1 mouse_genomes_project 2 161582748 161588162 - Tgm2 protein_coding processed_transcript MGP_C3HHeJ_T0052342.1 MGP_C3HHeJ_G0025091.1 mouse_genomes_project 2 11004604 11148920 - MGP_C3HHeJ_P0052342 St8sia6 protein_coding protein_coding MGP_C3HHeJ_T0052343.1 MGP_C3HHeJ_G0025091.1 mouse_genomes_project 2 11010737 11148149 - St8sia6 protein_coding processed_transcript MGP_C3HHeJ_T0057264.1 MGP_C3HHeJ_G0026208.1 mouse_genomes_project 2 131595983 131674091 - MGP_C3HHeJ_P0057264 F830045P16Rik protein_coding protein_coding MGP_C3HHeJ_T0055593.1 MGP_C3HHeJ_G0025823.1 mouse_genomes_project 2 89600272 89601217 - MGP_C3HHeJ_P0055593 Olfr1240 protein_coding protein_coding MGP_C3HHeJ_T0058614.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291799 162357965 + MGP_C3HHeJ_P0058614 Dhx35 protein_coding protein_coding MGP_C3HHeJ_T0058615.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291799 162357965 + MGP_C3HHeJ_P0058615 Dhx35 protein_coding protein_coding MGP_C3HHeJ_T0058616.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291854 162357965 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058617.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291857 162345032 + Dhx35 protein_coding retained_intron MGP_C3HHeJ_T0058618.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291877 162327696 + MGP_C3HHeJ_P0058618 Dhx35 protein_coding protein_coding MGP_C3HHeJ_T0058619.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162291883 162316516 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058620.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162292915 162298505 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058621.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162325527 162333058 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0058622.1 MGP_C3HHeJ_G0026518.1 mouse_genomes_project 2 162348708 162357119 + Dhx35 protein_coding processed_transcript MGP_C3HHeJ_T0056994.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126015278 126072901 + Sema6d protein_coding retained_intron MGP_C3HHeJ_T0056995.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126015278 126607143 + MGP_C3HHeJ_P0056995 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0056996.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126072552 126440593 + Sema6d protein_coding processed_transcript MGP_C3HHeJ_T0056997.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126546842 126601263 + Sema6d protein_coding retained_intron MGP_C3HHeJ_T0056998.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126605600 + MGP_C3HHeJ_P0056998 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0056999.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126605600 + MGP_C3HHeJ_P0056999 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057000.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126604329 + MGP_C3HHeJ_P0057000 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057001.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547032 126605600 + MGP_C3HHeJ_P0057001 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057002.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547309 126605597 + MGP_C3HHeJ_P0057002 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057003.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126547337 126604329 + MGP_C3HHeJ_P0057003 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0057004.1 MGP_C3HHeJ_G0026140.1 mouse_genomes_project 2 126592017 126603687 + MGP_C3HHeJ_P0057004 Sema6d protein_coding protein_coding MGP_C3HHeJ_T0054882.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69881804 69913823 + MGP_C3HHeJ_P0054882 Erich2 protein_coding protein_coding MGP_C3HHeJ_T0054883.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69881816 69913823 + MGP_C3HHeJ_P0054883 Erich2 protein_coding protein_coding MGP_C3HHeJ_T0054884.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69882445 69910257 + Erich2 protein_coding retained_intron MGP_C3HHeJ_T0054885.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69882445 69896852 + Erich2 protein_coding retained_intron MGP_C3HHeJ_T0054886.1 MGP_C3HHeJ_G0025544.1 mouse_genomes_project 2 69882482 69900662 + MGP_C3HHeJ_P0054886 Erich2 protein_coding protein_coding MGP_C3HHeJ_T0100509.1 MGP_C3HHeJ_G0038703.1 mouse_genomes_project 2 164575854 164575979 + Gm25561 snoRNA snoRNA MGP_C3HHeJ_T0013425.1 MGP_C3HHeJ_G0011529.1 mouse_genomes_project 2 59570901 59571148 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056321.1 MGP_C3HHeJ_G0025981.1 mouse_genomes_project 2 112554950 112555889 + MGP_C3HHeJ_P0056321 Olfr1288 protein_coding protein_coding MGP_C3HHeJ_T0055626.1 MGP_C3HHeJ_G0025843.1 mouse_genomes_project 2 90252819 90253643 + MGP_C3HHeJ_P0055626 Olfr1261 protein_coding protein_coding MGP_C3HHeJ_T0003867.1 MGP_C3HHeJ_G0003451.1 mouse_genomes_project 2 27777872 27779467 - 2600006K01Rik antisense antisense MGP_C3HHeJ_T0057828.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152713080 152787011 + MGP_C3HHeJ_P0057828 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057830.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714657 152893170 + MGP_C3HHeJ_P0057830 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057831.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714738 152787052 + MGP_C3HHeJ_P0057831 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057832.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714770 152787048 + MGP_C3HHeJ_P0057832 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057833.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152714791 152787178 + MGP_C3HHeJ_P0057833 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057834.1 MGP_C3HHeJ_G0026341.1 mouse_genomes_project 2 152783537 152893170 + MGP_C3HHeJ_P0057834 Syndig1 protein_coding protein_coding MGP_C3HHeJ_T0057359.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854771 132868734 + MGP_C3HHeJ_P0057359 Itpa protein_coding protein_coding MGP_C3HHeJ_T0057360.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854966 132863135 + Itpa protein_coding retained_intron MGP_C3HHeJ_T0057361.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854969 132862842 + Itpa protein_coding processed_transcript MGP_C3HHeJ_T0057362.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132854987 132859265 + Itpa protein_coding retained_intron MGP_C3HHeJ_T0057363.1 MGP_C3HHeJ_G0026233.1 mouse_genomes_project 2 132855026 132868152 + Itpa protein_coding processed_transcript MGP_C3HHeJ_T0013478.1 MGP_C3HHeJ_G0011582.1 mouse_genomes_project 2 80286111 80286796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007155.1 MGP_C3HHeJ_G0005862.1 mouse_genomes_project 2 74279200 74280261 + Gm14424 lincRNA lincRNA MGP_C3HHeJ_T0057213.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130717974 130801055 - MGP_C3HHeJ_P0057213 Anapc1 protein_coding protein_coding MGP_C3HHeJ_T0057214.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130723277 130726035 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057215.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130725465 130730737 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057216.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130730266 130735355 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057217.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130731631 130736534 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057218.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130736437 130737932 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057219.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130752178 130801040 - MGP_C3HHeJ_P0057219 Anapc1 protein_coding protein_coding MGP_C3HHeJ_T0057220.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130769030 130774459 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057221.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130770876 130775307 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057222.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130791098 130801039 - Anapc1 protein_coding processed_transcript MGP_C3HHeJ_T0057223.1 MGP_C3HHeJ_G0026193.1 mouse_genomes_project 2 130798716 130801018 - MGP_C3HHeJ_P0057223 Anapc1 protein_coding protein_coding MGP_C3HHeJ_T0053336.1 MGP_C3HHeJ_G0025275.1 mouse_genomes_project 2 27658354 27662482 + Gm13547 protein_coding processed_transcript MGP_C3HHeJ_T0053338.1 MGP_C3HHeJ_G0025275.1 mouse_genomes_project 2 27660570 27663132 + MGP_C3HHeJ_P0053338 Gm13547 protein_coding protein_coding MGP_C3HHeJ_T0053339.1 MGP_C3HHeJ_G0025275.1 mouse_genomes_project 2 27660603 27663010 + MGP_C3HHeJ_P0053339 Gm13547 protein_coding protein_coding MGP_C3HHeJ_T0055464.1 MGP_C3HHeJ_G0025713.1 mouse_genomes_project 2 86872868 86874994 - MGP_C3HHeJ_P0055464 protein_coding protein_coding MGP_C3HHeJ_T0010399.1 MGP_C3HHeJ_G0008532.1 mouse_genomes_project 2 172638704 172638768 - Mir7004 miRNA miRNA MGP_C3HHeJ_T0013587.1 MGP_C3HHeJ_G0011691.1 mouse_genomes_project 2 120519229 120519498 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013501.1 MGP_C3HHeJ_G0011605.1 mouse_genomes_project 2 87315193 87315728 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056347.1 MGP_C3HHeJ_G0026004.1 mouse_genomes_project 2 113475585 113487733 - MGP_C3HHeJ_P0056347 Nutm1 protein_coding protein_coding MGP_C3HHeJ_T0053705.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30029289 30110982 + MGP_C3HHeJ_P0053705 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053706.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30029339 30034774 + Nup214 protein_coding retained_intron MGP_C3HHeJ_T0053707.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30034589 30046179 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053708.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30049609 30053486 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053709.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30052749 30058635 + MGP_C3HHeJ_P0053709 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053710.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30067689 30069063 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053711.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30083742 30090369 + Nup214 protein_coding processed_transcript MGP_C3HHeJ_T0053712.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30092622 30113053 + MGP_C3HHeJ_P0053712 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053713.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30101164 30110978 + MGP_C3HHeJ_P0053713 Nup214 protein_coding protein_coding MGP_C3HHeJ_T0053715.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30109605 30111465 + Nup214 protein_coding retained_intron MGP_C3HHeJ_T0053716.1 MGP_C3HHeJ_G0025329.1 mouse_genomes_project 2 30110302 30110976 + Nup214 protein_coding retained_intron MGP_C3HHeJ_T0055305.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055305 protein_coding protein_coding MGP_C3HHeJ_T0055306.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055306 protein_coding protein_coding MGP_C3HHeJ_T0055307.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055307 protein_coding protein_coding MGP_C3HHeJ_T0055308.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055308 protein_coding protein_coding MGP_C3HHeJ_T0055309.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339092 84392830 - MGP_C3HHeJ_P0055309 protein_coding protein_coding MGP_C3HHeJ_T0055310.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339094 84392830 - MGP_C3HHeJ_P0055310 protein_coding protein_coding MGP_C3HHeJ_T0055311.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339094 84392830 - MGP_C3HHeJ_P0055311 protein_coding protein_coding MGP_C3HHeJ_T0055312.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339094 84392830 - MGP_C3HHeJ_P0055312 protein_coding protein_coding MGP_C3HHeJ_T0055313.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339802 84392825 - MGP_C3HHeJ_P0055313 protein_coding protein_coding MGP_C3HHeJ_T0055314.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339804 84392627 - protein_coding processed_transcript MGP_C3HHeJ_T0055315.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339804 84392597 - MGP_C3HHeJ_P0055315 protein_coding protein_coding MGP_C3HHeJ_T0055316.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84339804 84391590 - MGP_C3HHeJ_P0055316 protein_coding protein_coding MGP_C3HHeJ_T0055318.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84341549 84348676 - protein_coding processed_transcript MGP_C3HHeJ_T0055319.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84341645 84348696 - protein_coding processed_transcript MGP_C3HHeJ_T0055320.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84341908 84392839 - MGP_C3HHeJ_P0055320 protein_coding protein_coding MGP_C3HHeJ_T0055321.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84347985 84351605 - protein_coding processed_transcript MGP_C3HHeJ_T0055322.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84363409 84377981 - protein_coding processed_transcript MGP_C3HHeJ_T0055323.1 MGP_C3HHeJ_G0025630.1 mouse_genomes_project 2 84363448 84390647 - protein_coding processed_transcript MGP_C3HHeJ_T0055403.1 MGP_C3HHeJ_G0025654.1 mouse_genomes_project 2 85124480 85125555 - MGP_C3HHeJ_P0055403 protein_coding protein_coding MGP_C3HHeJ_T0003872.1 MGP_C3HHeJ_G0003455.1 mouse_genomes_project 2 29216526 29218404 - Gm13405 antisense antisense MGP_C3HHeJ_T0053870.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786292 30798951 - MGP_C3HHeJ_P0053870 Fpgs protein_coding protein_coding MGP_C3HHeJ_T0053871.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786293 30798901 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053872.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786500 30789640 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053873.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30786985 30788688 - Fpgs protein_coding processed_transcript MGP_C3HHeJ_T0053874.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30790185 30791186 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053875.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30790532 30808708 - MGP_C3HHeJ_P0053875 Fpgs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053876.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30790697 30791521 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053877.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30791099 30808716 - MGP_C3HHeJ_P0053877 Fpgs protein_coding protein_coding MGP_C3HHeJ_T0053878.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30797216 30798010 - Fpgs protein_coding retained_intron MGP_C3HHeJ_T0053879.1 MGP_C3HHeJ_G0025351.1 mouse_genomes_project 2 30797478 30808602 - MGP_C3HHeJ_P0053879 Fpgs protein_coding protein_coding MGP_C3HHeJ_T0003948.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74225603 74234610 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0003949.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74232425 74235082 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0003950.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74232575 74238548 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0003951.1 MGP_C3HHeJ_G0003512.1 mouse_genomes_project 2 74235681 74238682 - Hoxd3os1 antisense antisense MGP_C3HHeJ_T0055468.1 MGP_C3HHeJ_G0025716.1 mouse_genomes_project 2 86961669 86962635 - MGP_C3HHeJ_P0055468 Olfr1100 protein_coding protein_coding MGP_C3HHeJ_T0017509.1 MGP_C3HHeJ_G0015156.1 mouse_genomes_project 2 10605637 10662517 + Gm13270 processed_transcript antisense MGP_C3HHeJ_T0017510.1 MGP_C3HHeJ_G0015156.1 mouse_genomes_project 2 10605638 10608437 + Gm13270 processed_transcript retained_intron MGP_C3HHeJ_T0059143.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172762675 172783430 - MGP_C3HHeJ_P0059143 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059144.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172762675 172783430 - MGP_C3HHeJ_P0059144 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059145.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172762675 172783258 - MGP_C3HHeJ_P0059145 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059146.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172769244 172770273 - MGP_C3HHeJ_P0059146 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059147.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172770510 172781475 - MGP_C3HHeJ_P0059147 Sall4 protein_coding protein_coding MGP_C3HHeJ_T0059148.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172770943 172784172 - Sall4 protein_coding processed_transcript MGP_C3HHeJ_T0059149.1 MGP_C3HHeJ_G0026647.1 mouse_genomes_project 2 172771082 172783346 - Sall4 protein_coding processed_transcript MGP_C3HHeJ_T0007173.1 MGP_C3HHeJ_G0005878.1 mouse_genomes_project 2 91584061 91585268 + A330069E16Rik lincRNA lincRNA MGP_C3HHeJ_T0055605.1 MGP_C3HHeJ_G0025830.1 mouse_genomes_project 2 89954456 89955441 - MGP_C3HHeJ_P0055605 protein_coding protein_coding MGP_C3HHeJ_T0058536.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978181 160980603 + MGP_C3HHeJ_P0058536 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058537.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978210 160980337 + MGP_C3HHeJ_P0058537 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058538.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978213 160980621 + MGP_C3HHeJ_P0058538 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058539.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978219 160980603 + MGP_C3HHeJ_P0058539 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058540.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978224 160980091 + MGP_C3HHeJ_P0058540 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058541.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978226 160979471 + MGP_C3HHeJ_P0058541 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058542.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978227 160979881 + MGP_C3HHeJ_P0058542 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058543.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978233 160979879 + MGP_C3HHeJ_P0058543 Nnat protein_coding protein_coding MGP_C3HHeJ_T0058544.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160978243 160980616 + Nnat protein_coding retained_intron MGP_C3HHeJ_T0058545.1 MGP_C3HHeJ_G0026501.1 mouse_genomes_project 2 160979107 160979954 + Nnat protein_coding retained_intron MGP_C3HHeJ_T0059363.1 MGP_C3HHeJ_G0026708.1 mouse_genomes_project 2 184828533 184840772 - MGP_C3HHeJ_P0059363 Rbbp8nl protein_coding protein_coding MGP_C3HHeJ_T0013281.1 MGP_C3HHeJ_G0011385.1 mouse_genomes_project 2 8321831 8322765 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053889.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30831574 30868599 + MGP_C3HHeJ_P0053889 Sh2d3c protein_coding protein_coding MGP_C3HHeJ_T0053890.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30840792 30857665 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053891.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30840792 30869117 + MGP_C3HHeJ_P0053891 Sh2d3c protein_coding protein_coding MGP_C3HHeJ_T0053894.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30848371 30854142 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053895.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30854310 30859885 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053896.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30854312 30856497 + Sh2d3c protein_coding processed_transcript MGP_C3HHeJ_T0053897.1 MGP_C3HHeJ_G0025353.1 mouse_genomes_project 2 30854376 30868607 + MGP_C3HHeJ_P0053897 Sh2d3c protein_coding unknown_likely_coding MGP_C3HHeJ_T0055265.1 MGP_C3HHeJ_G0025621.1 mouse_genomes_project 2 81850468 82063536 + MGP_C3HHeJ_P0055265 Zfp804a protein_coding protein_coding MGP_C3HHeJ_T0055266.1 MGP_C3HHeJ_G0025621.1 mouse_genomes_project 2 82037077 82060985 + Zfp804a protein_coding processed_transcript MGP_C3HHeJ_T0013545.1 MGP_C3HHeJ_G0011649.1 mouse_genomes_project 2 103957268 103957695 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059247.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178612041 178668672 + MGP_C3HHeJ_P0059247 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059248.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178612041 178625156 + MGP_C3HHeJ_P0059248 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059249.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178613079 178668672 + MGP_C3HHeJ_P0059249 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059250.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677090 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059251.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677332 + MGP_C3HHeJ_P0059251 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059252.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178630279 + MGP_C3HHeJ_P0059252 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059253.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677090 + MGP_C3HHeJ_P0059253 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059254.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178626119 178677300 + MGP_C3HHeJ_P0059254 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059255.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657130 178675829 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059256.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657259 178677090 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059257.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657290 178658508 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059258.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657317 178668672 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059259.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178657583 178675867 + Gnas protein_coding processed_transcript MGP_C3HHeJ_T0059260.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659566 178677332 + MGP_C3HHeJ_P0059260 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059261.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659657 178677332 + MGP_C3HHeJ_P0059261 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059262.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659847 178668672 + MGP_C3HHeJ_P0059262 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059263.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178659856 178677336 + MGP_C3HHeJ_P0059263 Gnas protein_coding protein_coding MGP_C3HHeJ_T0059265.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178672291 178675997 + Gnas protein_coding retained_intron MGP_C3HHeJ_T0059266.1 MGP_C3HHeJ_G0026682.1 mouse_genomes_project 2 178675237 178676316 + Gnas protein_coding retained_intron MGP_C3HHeJ_T0000314.1 MGP_C3HHeJ_G0000264.1 mouse_genomes_project 2 20078985 20079054 + mt-Ts1 Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0004084.1 MGP_C3HHeJ_G0003608.1 mouse_genomes_project 2 167376721 167384021 - Gm16316 antisense antisense MGP_C3HHeJ_T0059182.1 MGP_C3HHeJ_G0026660.1 mouse_genomes_project 2 176566905 176581220 - MGP_C3HHeJ_P0059182 Aurka protein_coding unknown_likely_coding MGP_C3HHeJ_T0059183.1 MGP_C3HHeJ_G0026660.1 mouse_genomes_project 2 176567676 176573640 - Aurka protein_coding retained_intron MGP_C3HHeJ_T0059184.1 MGP_C3HHeJ_G0026660.1 mouse_genomes_project 2 176577057 176581028 - Aurka protein_coding retained_intron MGP_C3HHeJ_T0056840.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947263 122992182 - MGP_C3HHeJ_P0056840 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056841.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947263 122987859 - MGP_C3HHeJ_P0056841 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056842.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947263 122992185 - MGP_C3HHeJ_P0056842 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056843.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947593 122987827 - MGP_C3HHeJ_P0056843 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056844.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122947599 122992248 - MGP_C3HHeJ_P0056844 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056845.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122959144 122974228 - MGP_C3HHeJ_P0056845 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056846.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122959179 122971811 - MGP_C3HHeJ_P0056846 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056847.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122959257 122973798 - MGP_C3HHeJ_P0056847 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056848.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122965124 122974224 - MGP_C3HHeJ_P0056848 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0056849.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122965905 122974088 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056850.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122969431 122991929 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056851.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122971551 122979048 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056852.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122977430 122992163 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056853.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122980598 122985633 - MGP_C3HHeJ_P0056853 Ppip5k1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056854.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122983455 122992182 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056855.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122983869 122991927 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056856.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122985033 122991924 - Ppip5k1 protein_coding retained_intron MGP_C3HHeJ_T0056857.1 MGP_C3HHeJ_G0026107.1 mouse_genomes_project 2 122987318 122992136 - MGP_C3HHeJ_P0056857 Ppip5k1 protein_coding protein_coding MGP_C3HHeJ_T0053303.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 26982533 26989457 + MGP_C3HHeJ_P0053303 Setx protein_coding protein_coding MGP_C3HHeJ_T0053304.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 26983344 27047909 + MGP_C3HHeJ_P0053304 Setx protein_coding protein_coding MGP_C3HHeJ_T0053305.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 26984238 26989661 + Setx protein_coding retained_intron MGP_C3HHeJ_T0053306.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 27019560 27025110 + Setx protein_coding processed_transcript MGP_C3HHeJ_T0053307.1 MGP_C3HHeJ_G0025271.1 mouse_genomes_project 2 27026805 27043879 + MGP_C3HHeJ_P0053307 Setx protein_coding protein_coding MGP_C3HHeJ_T0055467.1 MGP_C3HHeJ_G0025715.1 mouse_genomes_project 2 86941088 86942027 - MGP_C3HHeJ_P0055467 Olfr1099 protein_coding protein_coding MGP_C3HHeJ_T0017575.1 MGP_C3HHeJ_G0015199.1 mouse_genomes_project 2 87134359 87138943 - Gm13734 processed_transcript processed_transcript MGP_C3HHeJ_T0055349.1 MGP_C3HHeJ_G0025640.1 mouse_genomes_project 2 84511581 84523364 - MGP_C3HHeJ_P0055349 Serping1 protein_coding protein_coding MGP_C3HHeJ_T0055350.1 MGP_C3HHeJ_G0025640.1 mouse_genomes_project 2 84511700 84523404 - MGP_C3HHeJ_P0055350 Serping1 protein_coding protein_coding MGP_C3HHeJ_T0055351.1 MGP_C3HHeJ_G0025640.1 mouse_genomes_project 2 84519272 84521270 - Serping1 protein_coding processed_transcript MGP_C3HHeJ_T0013315.1 MGP_C3HHeJ_G0011419.1 mouse_genomes_project 2 20271492 20271827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017595.1 MGP_C3HHeJ_G0015209.1 mouse_genomes_project 2 94465227 94468767 + Alkbh3os1 processed_transcript processed_transcript MGP_C3HHeJ_T0010398.1 MGP_C3HHeJ_G0008531.1 mouse_genomes_project 2 172159603 172159698 - Gm24561 miRNA miRNA MGP_C3HHeJ_T0056340.1 MGP_C3HHeJ_G0026000.1 mouse_genomes_project 2 113286181 113287120 - MGP_C3HHeJ_P0056340 Olfr1314 protein_coding protein_coding MGP_C3HHeJ_T0053009.1 MGP_C3HHeJ_G0025218.1 mouse_genomes_project 2 24089117 24096686 - MGP_C3HHeJ_P0053009 Card9 protein_coding protein_coding MGP_C3HHeJ_T0053010.1 MGP_C3HHeJ_G0025218.1 mouse_genomes_project 2 24089128 24089714 - Card9 protein_coding processed_transcript MGP_C3HHeJ_T0053011.1 MGP_C3HHeJ_G0025218.1 mouse_genomes_project 2 24089128 24097857 - MGP_C3HHeJ_P0053011 Card9 protein_coding protein_coding MGP_C3HHeJ_T0013465.1 MGP_C3HHeJ_G0011569.1 mouse_genomes_project 2 76870696 76871129 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059313.1 MGP_C3HHeJ_G0026698.1 mouse_genomes_project 2 184570765 184581240 + MGP_C3HHeJ_P0059313 Lsm14b protein_coding protein_coding MGP_C3HHeJ_T0059314.1 MGP_C3HHeJ_G0026698.1 mouse_genomes_project 2 184570964 184581247 + MGP_C3HHeJ_P0059314 Lsm14b protein_coding protein_coding MGP_C3HHeJ_T0059315.1 MGP_C3HHeJ_G0026698.1 mouse_genomes_project 2 184573687 184579590 + Lsm14b protein_coding processed_transcript MGP_C3HHeJ_T0057728.1 MGP_C3HHeJ_G0026311.1 mouse_genomes_project 2 147560036 147560796 + MGP_C3HHeJ_P0057728 Scp2d1 protein_coding protein_coding MGP_C3HHeJ_T0004068.1 MGP_C3HHeJ_G0003596.1 mouse_genomes_project 2 159692347 159693417 - Gm14170 antisense antisense MGP_C3HHeJ_T0007214.1 MGP_C3HHeJ_G0005912.1 mouse_genomes_project 2 116683273 116685858 + Gm13976 lincRNA lincRNA MGP_C3HHeJ_T0052520.1 MGP_C3HHeJ_G0025122.1 mouse_genomes_project 2 18944350 19419858 + MGP_C3HHeJ_P0052520 Gpr158 protein_coding protein_coding MGP_C3HHeJ_T0052521.1 MGP_C3HHeJ_G0025122.1 mouse_genomes_project 2 18944375 19400511 + Gpr158 protein_coding retained_intron MGP_C3HHeJ_T0059303.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 183958205 184431650 + MGP_C3HHeJ_P0059303 Cdh4 protein_coding protein_coding MGP_C3HHeJ_T0059304.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 183958396 184380080 + MGP_C3HHeJ_P0059304 Cdh4 protein_coding protein_coding MGP_C3HHeJ_T0059305.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 183959965 184308843 + Cdh4 protein_coding processed_transcript MGP_C3HHeJ_T0059306.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 184305970 184325774 + Cdh4 protein_coding processed_transcript MGP_C3HHeJ_T0059307.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 184426160 184428426 + Cdh4 protein_coding retained_intron MGP_C3HHeJ_T0059308.1 MGP_C3HHeJ_G0026696.1 mouse_genomes_project 2 184426185 184426970 + MGP_C3HHeJ_P0059308 Cdh4 protein_coding protein_coding MGP_C3HHeJ_T0057150.1 MGP_C3HHeJ_G0026175.1 mouse_genomes_project 2 129416540 129418717 + MGP_C3HHeJ_P0057150 Dusp2 protein_coding protein_coding MGP_C3HHeJ_T0057151.1 MGP_C3HHeJ_G0026175.1 mouse_genomes_project 2 129416991 129417844 + Dusp2 protein_coding retained_intron MGP_C3HHeJ_T0052601.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21980690 22007369 + MGP_C3HHeJ_P0052601 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052602.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21980720 22028067 + MGP_C3HHeJ_P0052602 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052603.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998442 22021840 + MGP_C3HHeJ_P0052603 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052604.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998445 22007522 + MGP_C3HHeJ_P0052604 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052605.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998446 22010431 + Psd4 protein_coding processed_transcript MGP_C3HHeJ_T0052606.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21998463 22007416 + MGP_C3HHeJ_P0052606 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052607.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21999679 22007702 + MGP_C3HHeJ_P0052607 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052608.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 21999727 22021311 + MGP_C3HHeJ_P0052608 Psd4 protein_coding protein_coding MGP_C3HHeJ_T0052609.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 22014146 22016363 + MGP_C3HHeJ_P0052609 Psd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052610.1 MGP_C3HHeJ_G0025143.1 mouse_genomes_project 2 22018739 22020118 + Psd4 protein_coding retained_intron MGP_C3HHeJ_T0017550.1 MGP_C3HHeJ_G0015179.1 mouse_genomes_project 2 36995755 36999765 + Gm13587 processed_transcript processed_transcript MGP_C3HHeJ_T0057424.1 MGP_C3HHeJ_G0026243.1 mouse_genomes_project 2 133385085 133388801 - MGP_C3HHeJ_P0057424 Spef1 protein_coding protein_coding MGP_C3HHeJ_T0059627.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186455847 186475813 + MGP_C3HHeJ_P0059627 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059628.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186455906 186475798 + MGP_C3HHeJ_P0059628 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059629.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186458834 186464597 + MGP_C3HHeJ_P0059629 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059630.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186460457 186464651 + Pcmtd2 protein_coding retained_intron MGP_C3HHeJ_T0059631.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186462439 186473690 + MGP_C3HHeJ_P0059631 Pcmtd2 protein_coding protein_coding MGP_C3HHeJ_T0059632.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469307 186473954 + Pcmtd2 protein_coding processed_transcript MGP_C3HHeJ_T0059633.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469315 186473829 + Pcmtd2 protein_coding processed_transcript MGP_C3HHeJ_T0059634.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469349 186473607 + Pcmtd2 protein_coding processed_transcript MGP_C3HHeJ_T0059635.1 MGP_C3HHeJ_G0026754.1 mouse_genomes_project 2 186469912 186473857 + Pcmtd2 protein_coding retained_intron MGP_C3HHeJ_T0013322.1 MGP_C3HHeJ_G0011426.1 mouse_genomes_project 2 22111517 22112461 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058155.1 MGP_C3HHeJ_G0026438.1 mouse_genomes_project 2 157799961 157820273 - MGP_C3HHeJ_P0058155 Pxmp4 protein_coding protein_coding MGP_C3HHeJ_T0058156.1 MGP_C3HHeJ_G0026438.1 mouse_genomes_project 2 157809458 157820253 - MGP_C3HHeJ_P0058156 Pxmp4 protein_coding protein_coding MGP_C3HHeJ_T0057201.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227778 130231769 + Bcl2l11 protein_coding processed_transcript MGP_C3HHeJ_T0057202.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227778 130233248 + MGP_C3HHeJ_P0057202 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057203.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227778 130262699 + MGP_C3HHeJ_P0057203 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057204.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227779 130264286 + MGP_C3HHeJ_P0057204 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057205.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227780 130260161 + MGP_C3HHeJ_P0057205 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057206.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130227790 130262966 + MGP_C3HHeJ_P0057206 Bcl2l11 protein_coding protein_coding MGP_C3HHeJ_T0057207.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130229312 130231899 + Bcl2l11 protein_coding processed_transcript MGP_C3HHeJ_T0057208.1 MGP_C3HHeJ_G0026190.1 mouse_genomes_project 2 130229868 130230476 + Bcl2l11 protein_coding processed_transcript MGP_C3HHeJ_T0058153.1 MGP_C3HHeJ_G0026437.1 mouse_genomes_project 2 157770088 157782309 - MGP_C3HHeJ_P0058153 E2f1 protein_coding protein_coding MGP_C3HHeJ_T0058154.1 MGP_C3HHeJ_G0026437.1 mouse_genomes_project 2 157770315 157782137 - MGP_C3HHeJ_P0058154 E2f1 protein_coding protein_coding MGP_C3HHeJ_T0013735.1 MGP_C3HHeJ_G0011839.1 mouse_genomes_project 2 186342703 186343605 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059298.1 MGP_C3HHeJ_G0026694.1 mouse_genomes_project 2 182916737 182929099 + MGP_C3HHeJ_P0059298 Fam217b protein_coding protein_coding MGP_C3HHeJ_T0059299.1 MGP_C3HHeJ_G0026694.1 mouse_genomes_project 2 182916795 182923761 + Fam217b protein_coding processed_transcript MGP_C3HHeJ_T0056591.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121228032 121287900 + MGP_C3HHeJ_P0056591 Rtf1 protein_coding protein_coding MGP_C3HHeJ_T0056592.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121228061 121245649 + Rtf1 protein_coding processed_transcript MGP_C3HHeJ_T0056593.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121263402 121264783 + Rtf1 protein_coding retained_intron MGP_C3HHeJ_T0056594.1 MGP_C3HHeJ_G0026069.1 mouse_genomes_project 2 121279080 121280043 + Rtf1 protein_coding retained_intron MGP_C3HHeJ_T0052729.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22877438 22882907 - MGP_C3HHeJ_P0052729 Slc34a3 protein_coding protein_coding MGP_C3HHeJ_T0052730.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22879322 22881590 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052731.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880504 22882761 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052732.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880545 22882754 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052733.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880550 22882252 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052734.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880821 22882777 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0052735.1 MGP_C3HHeJ_G0025161.1 mouse_genomes_project 2 22880969 22882731 - Slc34a3 protein_coding processed_transcript MGP_C3HHeJ_T0010334.1 MGP_C3HHeJ_G0008467.1 mouse_genomes_project 2 67027813 67027911 + Mir6335 miRNA miRNA MGP_C3HHeJ_T0055506.1 MGP_C3HHeJ_G0025746.1 mouse_genomes_project 2 87747985 87751978 - MGP_C3HHeJ_P0055506 protein_coding protein_coding MGP_C3HHeJ_T0055508.1 MGP_C3HHeJ_G0025746.1 mouse_genomes_project 2 87748463 87751978 - protein_coding processed_transcript MGP_C3HHeJ_T0017607.1 MGP_C3HHeJ_G0015214.1 mouse_genomes_project 2 110627681 110628610 + Gm20638 processed_transcript processed_transcript MGP_C3HHeJ_T0099235.1 MGP_C3HHeJ_G0037429.1 mouse_genomes_project 2 186277884 186277991 + Gm25879 snRNA snRNA MGP_C3HHeJ_T0098395.1 MGP_C3HHeJ_G0036601.1 mouse_genomes_project 2 4017176 4018404 - Gm10115 sense_intronic sense_intronic MGP_C3HHeJ_T0055631.1 MGP_C3HHeJ_G0025847.1 mouse_genomes_project 2 90384907 90386064 - MGP_C3HHeJ_P0055631 Olfr32 protein_coding protein_coding MGP_C3HHeJ_T0013492.1 MGP_C3HHeJ_G0011596.1 mouse_genomes_project 2 83792890 83793261 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057914.1 MGP_C3HHeJ_G0026361.1 mouse_genomes_project 2 154682836 154707370 - MGP_C3HHeJ_P0057914 Rad21l protein_coding protein_coding MGP_C3HHeJ_T0057915.1 MGP_C3HHeJ_G0026361.1 mouse_genomes_project 2 154682836 154707370 - MGP_C3HHeJ_P0057915 Rad21l protein_coding protein_coding MGP_C3HHeJ_T0052557.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20602564 20645305 + MGP_C3HHeJ_P0052557 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052558.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20602597 20645305 + MGP_C3HHeJ_P0052558 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052559.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20602631 20609822 + MGP_C3HHeJ_P0052559 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052560.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603464 20645303 + MGP_C3HHeJ_P0052560 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052561.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603468 20645305 + MGP_C3HHeJ_P0052561 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0052562.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603485 20643312 + MGP_C3HHeJ_P0052562 Acbd5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0052563.1 MGP_C3HHeJ_G0025129.1 mouse_genomes_project 2 20603723 20621817 + MGP_C3HHeJ_P0052563 Acbd5 protein_coding protein_coding MGP_C3HHeJ_T0099186.1 MGP_C3HHeJ_G0037380.1 mouse_genomes_project 2 33138720 33138824 + Gm24905 snRNA snRNA MGP_C3HHeJ_T0013264.1 MGP_C3HHeJ_G0011368.1 mouse_genomes_project 2 660616 661405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010276.1 MGP_C3HHeJ_G0008409.1 mouse_genomes_project 2 7714444 7714542 + Mir669m-1 miRNA miRNA MGP_C3HHeJ_T0052531.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20282844 20348550 + Apbb1ip protein_coding processed_transcript MGP_C3HHeJ_T0052532.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20282844 20387792 + MGP_C3HHeJ_P0052532 Apbb1ip protein_coding protein_coding MGP_C3HHeJ_T0052533.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20283140 20364818 + Apbb1ip protein_coding processed_transcript MGP_C3HHeJ_T0052534.1 MGP_C3HHeJ_G0025126.1 mouse_genomes_project 2 20283195 20340919 + Apbb1ip protein_coding retained_intron MGP_C3HHeJ_T0010325.1 MGP_C3HHeJ_G0008458.1 mouse_genomes_project 2 37186424 37186500 + Mir181a-2 miRNA miRNA MGP_C3HHeJ_T0001060.1 MGP_C3HHeJ_G0000997.1 mouse_genomes_project 2 117434469 117435402 - TEC TEC MGP_C3HHeJ_T0003881.1 MGP_C3HHeJ_G0003464.1 mouse_genomes_project 2 31311925 31315908 + Gm13528 antisense antisense MGP_C3HHeJ_T0055535.1 MGP_C3HHeJ_G0025772.1 mouse_genomes_project 2 88194874 88195855 - MGP_C3HHeJ_P0055535 Olfr1164 protein_coding protein_coding MGP_C3HHeJ_T0058820.1 MGP_C3HHeJ_G0026578.1 mouse_genomes_project 2 168351933 168361943 + MGP_C3HHeJ_P0058820 Wfdc6b protein_coding protein_coding MGP_C3HHeJ_T0059038.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170916481 170938036 + MGP_C3HHeJ_P0059038 Ddx27 protein_coding protein_coding MGP_C3HHeJ_T0059039.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170916598 170928035 + MGP_C3HHeJ_P0059039 Ddx27 protein_coding protein_coding MGP_C3HHeJ_T0059040.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170916598 170926755 + MGP_C3HHeJ_P0059040 Ddx27 protein_coding protein_coding MGP_C3HHeJ_T0059041.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170928422 170930084 + Ddx27 protein_coding retained_intron MGP_C3HHeJ_T0059042.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170929763 170930512 + Ddx27 protein_coding retained_intron MGP_C3HHeJ_T0059043.1 MGP_C3HHeJ_G0026624.1 mouse_genomes_project 2 170936935 170937992 + Ddx27 protein_coding retained_intron MGP_C3HHeJ_T0059166.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457034 174538249 - MGP_C3HHeJ_P0059166 Bcas1 protein_coding protein_coding MGP_C3HHeJ_T0059167.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457186 174531083 - MGP_C3HHeJ_P0059167 Bcas1 protein_coding protein_coding MGP_C3HHeJ_T0059168.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457187 174538249 - MGP_C3HHeJ_P0059168 Bcas1 protein_coding protein_coding MGP_C3HHeJ_T0059169.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457974 174459784 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059170.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174457988 174467158 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059171.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174458132 174459839 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059172.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174497665 174498698 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0059173.1 MGP_C3HHeJ_G0026652.1 mouse_genomes_project 2 174508141 174538249 - Bcas1 protein_coding processed_transcript MGP_C3HHeJ_T0100445.1 MGP_C3HHeJ_G0038639.1 mouse_genomes_project 2 31084575 31084705 + Snora65 snoRNA snoRNA MGP_C3HHeJ_T0057485.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134230861 134271943 - MGP_C3HHeJ_P0057485 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0057486.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134234217 134272143 - MGP_C3HHeJ_P0057486 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0057487.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134242920 134263115 - Rassf2 protein_coding retained_intron MGP_C3HHeJ_T0057488.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134244903 134272199 - MGP_C3HHeJ_P0057488 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0057489.1 MGP_C3HHeJ_G0026256.1 mouse_genomes_project 2 134251701 134271108 - MGP_C3HHeJ_P0057489 Rassf2 protein_coding protein_coding MGP_C3HHeJ_T0010394.1 MGP_C3HHeJ_G0008527.1 mouse_genomes_project 2 168076893 168076964 - Mir7678 miRNA miRNA MGP_C3HHeJ_T0053987.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31891385 32057120 - MGP_C3HHeJ_P0053987 Mvb12b protein_coding protein_coding MGP_C3HHeJ_T0053988.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31948646 31952095 - Mvb12b protein_coding retained_intron MGP_C3HHeJ_T0053989.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31950503 32056019 - Mvb12b protein_coding processed_transcript MGP_C3HHeJ_T0053990.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 31989452 32056019 - MGP_C3HHeJ_P0053990 Mvb12b protein_coding protein_coding MGP_C3HHeJ_T0053991.1 MGP_C3HHeJ_G0025370.1 mouse_genomes_project 2 32039798 32056656 - Mvb12b protein_coding processed_transcript MGP_C3HHeJ_T0057063.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128320101 128507519 - MGP_C3HHeJ_P0057063 Atp8b4 protein_coding protein_coding MGP_C3HHeJ_T0057064.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128321632 128498401 - MGP_C3HHeJ_P0057064 Atp8b4 protein_coding protein_coding MGP_C3HHeJ_T0057065.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128371359 128498381 - Atp8b4 protein_coding retained_intron MGP_C3HHeJ_T0057066.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128371403 128507661 - MGP_C3HHeJ_P0057066 Atp8b4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057067.1 MGP_C3HHeJ_G0026158.1 mouse_genomes_project 2 128396649 128508346 - MGP_C3HHeJ_P0057067 Atp8b4 protein_coding protein_coding MGP_C3HHeJ_T0010271.1 MGP_C3HHeJ_G0008404.1 mouse_genomes_project 2 7712445 7712547 + Gm22925 miRNA miRNA MGP_C3HHeJ_T0100454.1 MGP_C3HHeJ_G0038648.1 mouse_genomes_project 2 52521984 52522093 - Gm23315 snoRNA snoRNA MGP_C3HHeJ_T0056328.1 MGP_C3HHeJ_G0025988.1 mouse_genomes_project 2 112805246 112806185 + MGP_C3HHeJ_P0056328 protein_coding protein_coding MGP_C3HHeJ_T0001069.1 MGP_C3HHeJ_G0001005.1 mouse_genomes_project 2 160195399 160198745 - TEC TEC MGP_C3HHeJ_T0056341.1 MGP_C3HHeJ_G0026001.1 mouse_genomes_project 2 113337447 113338704 - MGP_C3HHeJ_P0056341 protein_coding protein_coding MGP_C3HHeJ_T0057967.1 MGP_C3HHeJ_G0026382.1 mouse_genomes_project 2 155581500 155585301 - MGP_C3HHeJ_P0057967 Defb26 protein_coding protein_coding MGP_C3HHeJ_T0053827.1 MGP_C3HHeJ_G0025342.1 mouse_genomes_project 2 30547393 30553890 + MGP_C3HHeJ_P0053827 Naif1 protein_coding protein_coding MGP_C3HHeJ_T0007136.1 MGP_C3HHeJ_G0005848.1 mouse_genomes_project 2 71166719 71179298 + Platr26 lincRNA lincRNA MGP_C3HHeJ_T0004069.1 MGP_C3HHeJ_G0003597.1 mouse_genomes_project 2 160961637 160962842 - Gm14286 antisense antisense MGP_C3HHeJ_T0007141.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72224539 72294026 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0007142.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72225198 72229546 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0007143.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72264431 72294071 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0007144.1 MGP_C3HHeJ_G0005853.1 mouse_genomes_project 2 72264748 72279912 - 6430710C18Rik lincRNA lincRNA MGP_C3HHeJ_T0052844.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23136209 23142021 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052845.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23136209 23141269 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052852.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140518 23141386 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052853.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140550 23142163 - MGP_C3HHeJ_P0052853 BC029214 protein_coding protein_coding MGP_C3HHeJ_T0052854.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140552 23142141 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052855.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140553 23141348 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052856.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140553 23141733 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052857.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140599 23142077 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052858.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140629 23142034 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052859.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23140883 23142100 - MGP_C3HHeJ_P0052859 BC029214 protein_coding protein_coding MGP_C3HHeJ_T0052860.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23141080 23142092 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052861.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23141096 23141996 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0052862.1 MGP_C3HHeJ_G0025181.1 mouse_genomes_project 2 23141327 23142017 - BC029214 protein_coding processed_transcript MGP_C3HHeJ_T0056258.1 MGP_C3HHeJ_G0025957.1 mouse_genomes_project 2 108167141 108174969 + MGP_C3HHeJ_P0056258 Kcna4 protein_coding protein_coding MGP_C3HHeJ_T0056259.1 MGP_C3HHeJ_G0025957.1 mouse_genomes_project 2 108167895 108170941 + Kcna4 protein_coding processed_transcript MGP_C3HHeJ_T0055503.1 MGP_C3HHeJ_G0025743.1 mouse_genomes_project 2 87712679 87713603 + MGP_C3HHeJ_P0055503 protein_coding protein_coding MGP_C3HHeJ_T0053417.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27955598 27972920 - MGP_C3HHeJ_P0053417 Wdr34 protein_coding protein_coding MGP_C3HHeJ_T0053418.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27955964 27956558 - Wdr34 protein_coding retained_intron MGP_C3HHeJ_T0053419.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27957846 27959099 - Wdr34 protein_coding retained_intron MGP_C3HHeJ_T0053420.1 MGP_C3HHeJ_G0025285.1 mouse_genomes_project 2 27971219 27972900 - Wdr34 protein_coding processed_transcript MGP_C3HHeJ_T0101179.1 MGP_C3HHeJ_G0039328.1 mouse_genomes_project 2 153242652 153243332 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101180.1 MGP_C3HHeJ_G0039328.1 mouse_genomes_project 2 153242885 153243641 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0055482.1 MGP_C3HHeJ_G0025730.1 mouse_genomes_project 2 87319907 87321271 + MGP_C3HHeJ_P0055482 protein_coding protein_coding MGP_C3HHeJ_T0057159.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129520403 129528688 - MGP_C3HHeJ_P0057159 Fahd2a protein_coding protein_coding MGP_C3HHeJ_T0057160.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129520404 129528703 - Fahd2a protein_coding retained_intron MGP_C3HHeJ_T0057161.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129520459 129522500 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0057162.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129521025 129528695 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0057163.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129522302 129528618 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0057164.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129522591 129528654 - Fahd2a protein_coding retained_intron MGP_C3HHeJ_T0057165.1 MGP_C3HHeJ_G0026179.1 mouse_genomes_project 2 129524611 129528646 - Fahd2a protein_coding processed_transcript MGP_C3HHeJ_T0007354.1 MGP_C3HHeJ_G0006028.1 mouse_genomes_project 2 185494911 185496027 + Gm27032 lincRNA lincRNA MGP_C3HHeJ_T0058695.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166708212 166741171 + MGP_C3HHeJ_P0058695 Mybl2 protein_coding protein_coding MGP_C3HHeJ_T0058696.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166712872 166719147 + Mybl2 protein_coding processed_transcript MGP_C3HHeJ_T0058697.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166722884 166727801 + Mybl2 protein_coding retained_intron MGP_C3HHeJ_T0058698.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166729402 166738287 + MGP_C3HHeJ_P0058698 Mybl2 protein_coding protein_coding MGP_C3HHeJ_T0058699.1 MGP_C3HHeJ_G0026534.1 mouse_genomes_project 2 166729810 166735425 + Mybl2 protein_coding retained_intron MGP_C3HHeJ_T0013604.1 MGP_C3HHeJ_G0011708.1 mouse_genomes_project 2 131076057 131076536 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017604.1 MGP_C3HHeJ_G0015213.1 mouse_genomes_project 2 107504009 107504465 - BB218582 processed_transcript processed_transcript MGP_C3HHeJ_T0017605.1 MGP_C3HHeJ_G0015213.1 mouse_genomes_project 2 107504012 107511486 - BB218582 processed_transcript processed_transcript MGP_C3HHeJ_T0017606.1 MGP_C3HHeJ_G0015213.1 mouse_genomes_project 2 107508315 107511456 - BB218582 processed_transcript processed_transcript MGP_C3HHeJ_T0052470.1 MGP_C3HHeJ_G0025116.1 mouse_genomes_project 2 16975266 17071937 - MGP_C3HHeJ_P0052470 4921504E06Rik protein_coding protein_coding MGP_C3HHeJ_T0052471.1 MGP_C3HHeJ_G0025116.1 mouse_genomes_project 2 17010793 17071937 - 4921504E06Rik protein_coding retained_intron MGP_C3HHeJ_T0003982.1 MGP_C3HHeJ_G0003531.1 mouse_genomes_project 2 114650735 114704986 - Gm13963 antisense antisense MGP_C3HHeJ_T0058817.1 MGP_C3HHeJ_G0026577.1 mouse_genomes_project 2 168334146 168352027 - MGP_C3HHeJ_P0058817 Wfdc8 protein_coding protein_coding MGP_C3HHeJ_T0058818.1 MGP_C3HHeJ_G0026577.1 mouse_genomes_project 2 168334154 168357117 - MGP_C3HHeJ_P0058818 Wfdc8 protein_coding protein_coding MGP_C3HHeJ_T0058819.1 MGP_C3HHeJ_G0026577.1 mouse_genomes_project 2 168334902 168352027 - MGP_C3HHeJ_P0058819 Wfdc8 protein_coding protein_coding MGP_C3HHeJ_T0055588.1 MGP_C3HHeJ_G0025820.1 mouse_genomes_project 2 89514404 89516783 - MGP_C3HHeJ_P0055588 Olfr1234 protein_coding protein_coding MGP_C3HHeJ_T0055589.1 MGP_C3HHeJ_G0025820.1 mouse_genomes_project 2 89514404 89515349 - MGP_C3HHeJ_P0055589 Olfr1234 protein_coding protein_coding MGP_C3HHeJ_T0055590.1 MGP_C3HHeJ_G0025820.1 mouse_genomes_project 2 89515485 89516787 - Olfr1234 protein_coding processed_transcript MGP_C3HHeJ_T0003953.1 MGP_C3HHeJ_G0003514.1 mouse_genomes_project 2 76326791 76391092 + Gm13938 antisense antisense MGP_C3HHeJ_T0003871.1 MGP_C3HHeJ_G0003454.1 mouse_genomes_project 2 28778728 28782240 + 4930527E20Rik antisense antisense MGP_C3HHeJ_T0010360.1 MGP_C3HHeJ_G0008493.1 mouse_genomes_project 2 115422904 115422959 - Mir7002 miRNA miRNA MGP_C3HHeJ_T0013548.1 MGP_C3HHeJ_G0011652.1 mouse_genomes_project 2 104545440 104545914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011416.1 MGP_C3HHeJ_G0009549.1 mouse_genomes_project 2 128263244 128263536 - Gm24739 misc_RNA misc_RNA MGP_C3HHeJ_T0054800.1 MGP_C3HHeJ_G0025526.1 mouse_genomes_project 2 68423149 68485752 + MGP_C3HHeJ_P0054800 Nostrin protein_coding protein_coding MGP_C3HHeJ_T0054801.1 MGP_C3HHeJ_G0025526.1 mouse_genomes_project 2 68474893 68481976 + Nostrin protein_coding processed_transcript MGP_C3HHeJ_T0013410.1 MGP_C3HHeJ_G0011514.1 mouse_genomes_project 2 56100612 56100801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056543.1 MGP_C3HHeJ_G0026053.1 mouse_genomes_project 2 120683720 120688055 + MGP_C3HHeJ_P0056543 Gchfr protein_coding protein_coding MGP_C3HHeJ_T0004041.1 MGP_C3HHeJ_G0003572.1 mouse_genomes_project 2 146754731 146764386 - Banf2os antisense antisense MGP_C3HHeJ_T0004042.1 MGP_C3HHeJ_G0003572.1 mouse_genomes_project 2 146755158 146764363 - Banf2os antisense antisense MGP_C3HHeJ_T0004049.1 MGP_C3HHeJ_G0003579.1 mouse_genomes_project 2 150175854 150176736 - AI646519 antisense antisense MGP_C3HHeJ_T0010374.1 MGP_C3HHeJ_G0008507.1 mouse_genomes_project 2 133248586 133248666 - Mir6973b miRNA miRNA MGP_C3HHeJ_T0055460.1 MGP_C3HHeJ_G0025709.1 mouse_genomes_project 2 86765183 86766152 + MGP_C3HHeJ_P0055460 Olfr1093 protein_coding protein_coding MGP_C3HHeJ_T0013451.1 MGP_C3HHeJ_G0011555.1 mouse_genomes_project 2 71820723 71821019 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004057.1 MGP_C3HHeJ_G0003586.1 mouse_genomes_project 2 155733889 155735329 - 1700030C14Rik antisense antisense MGP_C3HHeJ_T0054036.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33014861 33033947 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054037.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015525 33037100 - MGP_C3HHeJ_P0054037 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054038.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015685 33034208 - MGP_C3HHeJ_P0054038 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054039.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015686 33037262 - MGP_C3HHeJ_P0054039 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054040.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015688 33037257 - MGP_C3HHeJ_P0054040 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054041.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33015688 33037098 - MGP_C3HHeJ_P0054041 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054042.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33016600 33037228 - MGP_C3HHeJ_P0054042 Fbxw2 protein_coding protein_coding MGP_C3HHeJ_T0054043.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33017625 33019013 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054044.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33022188 33037338 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054045.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33023087 33037194 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054046.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33026470 33037244 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054047.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33032883 33037234 - Fbxw2 protein_coding retained_intron MGP_C3HHeJ_T0054048.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33033630 33037049 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0054049.1 MGP_C3HHeJ_G0025376.1 mouse_genomes_project 2 33036289 33037242 - Fbxw2 protein_coding processed_transcript MGP_C3HHeJ_T0013524.1 MGP_C3HHeJ_G0011628.1 mouse_genomes_project 2 94428949 94429529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001017.1 MGP_C3HHeJ_G0000954.1 mouse_genomes_project 2 12057131 12058540 + TEC TEC MGP_C3HHeJ_T0059283.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179106655 179130001 + MGP_C3HHeJ_P0059283 Edn3 protein_coding protein_coding MGP_C3HHeJ_T0059284.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179106835 179127939 + MGP_C3HHeJ_P0059284 Edn3 protein_coding protein_coding MGP_C3HHeJ_T0059285.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179107088 179128544 + Edn3 protein_coding retained_intron MGP_C3HHeJ_T0059286.1 MGP_C3HHeJ_G0026690.1 mouse_genomes_project 2 179115958 179128499 + Edn3 protein_coding processed_transcript MGP_C3HHeJ_T0055915.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811381 92812447 + 1700029I15Rik protein_coding retained_intron MGP_C3HHeJ_T0055916.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811761 92812447 + MGP_C3HHeJ_P0055916 1700029I15Rik protein_coding protein_coding MGP_C3HHeJ_T0055917.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811761 92814550 + MGP_C3HHeJ_P0055917 1700029I15Rik protein_coding protein_coding MGP_C3HHeJ_T0055918.1 MGP_C3HHeJ_G0025887.1 mouse_genomes_project 2 92811761 92812433 + MGP_C3HHeJ_P0055918 1700029I15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007063.1 MGP_C3HHeJ_G0005791.1 mouse_genomes_project 2 16855915 16863005 + lincRNA lincRNA MGP_C3HHeJ_T0007064.1 MGP_C3HHeJ_G0005791.1 mouse_genomes_project 2 16856436 16864853 + lincRNA lincRNA MGP_C3HHeJ_T0007065.1 MGP_C3HHeJ_G0005791.1 mouse_genomes_project 2 16856535 16862739 + lincRNA lincRNA MGP_C3HHeJ_T0058121.1 MGP_C3HHeJ_G0026430.1 mouse_genomes_project 2 157441481 157459657 + MGP_C3HHeJ_P0058121 protein_coding protein_coding MGP_C3HHeJ_T0013313.1 MGP_C3HHeJ_G0011417.1 mouse_genomes_project 2 19027831 19028452 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059174.1 MGP_C3HHeJ_G0026653.1 mouse_genomes_project 2 174594892 174610744 - MGP_C3HHeJ_P0059174 Cyp24a1 protein_coding protein_coding MGP_C3HHeJ_T0052967.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23701389 23716103 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052968.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23701389 23729930 - MGP_C3HHeJ_P0052968 Ubac1 protein_coding protein_coding MGP_C3HHeJ_T0052969.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23701652 23717406 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052970.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23713586 23724495 - MGP_C3HHeJ_P0052970 Ubac1 protein_coding protein_coding MGP_C3HHeJ_T0052971.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23714709 23729715 - MGP_C3HHeJ_P0052971 Ubac1 protein_coding protein_coding MGP_C3HHeJ_T0052972.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23717077 23719136 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052973.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23718717 23725661 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052974.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23723094 23729749 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0052975.1 MGP_C3HHeJ_G0025210.1 mouse_genomes_project 2 23724147 23729785 - Ubac1 protein_coding processed_transcript MGP_C3HHeJ_T0055416.1 MGP_C3HHeJ_G0025667.1 mouse_genomes_project 2 85570066 85571160 + MGP_C3HHeJ_P0055416 Olfr1014 protein_coding protein_coding MGP_C3HHeJ_T0013316.1 MGP_C3HHeJ_G0011420.1 mouse_genomes_project 2 20424236 20424776 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007265.1 MGP_C3HHeJ_G0005952.1 mouse_genomes_project 2 150133367 150134890 - Gm14110 lincRNA lincRNA MGP_C3HHeJ_T0011427.1 MGP_C3HHeJ_G0009560.1 mouse_genomes_project 2 170553442 170553789 + Gm25265 misc_RNA misc_RNA MGP_C3HHeJ_T0013319.1 MGP_C3HHeJ_G0011423.1 mouse_genomes_project 2 21070336 21070784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057530.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134961431 135029778 + MGP_C3HHeJ_P0057530 1110034G24Rik protein_coding protein_coding MGP_C3HHeJ_T0057531.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134964658 135029226 + MGP_C3HHeJ_P0057531 1110034G24Rik protein_coding protein_coding MGP_C3HHeJ_T0057532.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134964784 135029778 + MGP_C3HHeJ_P0057532 1110034G24Rik protein_coding protein_coding MGP_C3HHeJ_T0057533.1 MGP_C3HHeJ_G0026263.1 mouse_genomes_project 2 134975586 135029305 + 1110034G24Rik protein_coding processed_transcript MGP_C3HHeJ_T0056036.1 MGP_C3HHeJ_G0025912.1 mouse_genomes_project 2 102346040 102353833 + Traf6 protein_coding processed_transcript MGP_C3HHeJ_T0056037.1 MGP_C3HHeJ_G0025912.1 mouse_genomes_project 2 102346051 102369263 + MGP_C3HHeJ_P0056037 Traf6 protein_coding protein_coding MGP_C3HHeJ_T0056038.1 MGP_C3HHeJ_G0025912.1 mouse_genomes_project 2 102351812 102357678 + Traf6 protein_coding processed_transcript MGP_C3HHeJ_T0053426.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008099 28011541 + MGP_C3HHeJ_P0053426 Pkn3 protein_coding protein_coding MGP_C3HHeJ_T0053427.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008158 28023581 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053428.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008628 28010398 + MGP_C3HHeJ_P0053428 Pkn3 protein_coding protein_coding MGP_C3HHeJ_T0053429.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28008999 28023587 + MGP_C3HHeJ_P0053429 Pkn3 protein_coding protein_coding MGP_C3HHeJ_T0053430.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28009113 28016828 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053431.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28009169 28023590 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053432.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28011266 28013637 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0053433.1 MGP_C3HHeJ_G0025287.1 mouse_genomes_project 2 28015925 28018317 + Pkn3 protein_coding retained_intron MGP_C3HHeJ_T0052657.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598414 22609596 + MGP_C3HHeJ_P0052657 Dph7 protein_coding protein_coding MGP_C3HHeJ_T0052658.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598436 22609594 + MGP_C3HHeJ_P0052658 Dph7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052659.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598466 22603140 + MGP_C3HHeJ_P0052659 Dph7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052660.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598480 22609596 + Dph7 protein_coding retained_intron MGP_C3HHeJ_T0052661.1 MGP_C3HHeJ_G0025149.1 mouse_genomes_project 2 22598487 22607104 + MGP_C3HHeJ_P0052661 Dph7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013323.1 MGP_C3HHeJ_G0011427.1 mouse_genomes_project 2 22215312 22216924 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057767.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 148997143 149275436 - MGP_C3HHeJ_P0057767 Ralgapa2 protein_coding protein_coding MGP_C3HHeJ_T0057768.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149001223 149207866 - MGP_C3HHeJ_P0057768 Ralgapa2 protein_coding protein_coding MGP_C3HHeJ_T0057769.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149002039 149018519 - Ralgapa2 protein_coding processed_transcript MGP_C3HHeJ_T0057770.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149005452 149275331 - MGP_C3HHeJ_P0057770 Ralgapa2 protein_coding protein_coding MGP_C3HHeJ_T0057771.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149015719 149150821 - MGP_C3HHeJ_P0057771 Ralgapa2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057772.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149071679 149275331 - MGP_C3HHeJ_P0057772 Ralgapa2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057773.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149121443 149168654 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057774.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149167207 149175275 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057775.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149182463 149275343 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057776.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149191817 149275436 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0057777.1 MGP_C3HHeJ_G0026318.1 mouse_genomes_project 2 149246957 149275458 - Ralgapa2 protein_coding retained_intron MGP_C3HHeJ_T0010288.1 MGP_C3HHeJ_G0008421.1 mouse_genomes_project 2 11616373 11616452 + Mir511 miRNA miRNA MGP_C3HHeJ_T0057936.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294823 155343635 + MGP_C3HHeJ_P0057936 Csnk2a1 protein_coding protein_coding MGP_C3HHeJ_T0057937.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294860 155335123 + Csnk2a1 protein_coding retained_intron MGP_C3HHeJ_T0057938.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294880 155328865 + MGP_C3HHeJ_P0057938 Csnk2a1 protein_coding protein_coding MGP_C3HHeJ_T0057939.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294892 155325432 + MGP_C3HHeJ_P0057939 Csnk2a1 protein_coding protein_coding MGP_C3HHeJ_T0057940.1 MGP_C3HHeJ_G0026371.1 mouse_genomes_project 2 155294897 155320892 + Csnk2a1 protein_coding retained_intron MGP_C3HHeJ_T0058627.1 MGP_C3HHeJ_G0026521.1 mouse_genomes_project 2 164138294 164189568 - MGP_C3HHeJ_P0058627 protein_coding protein_coding MGP_C3HHeJ_T0013511.1 MGP_C3HHeJ_G0011615.1 mouse_genomes_project 2 87973246 87973773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058204.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158544782 158568508 - Pigu protein_coding processed_transcript MGP_C3HHeJ_T0058205.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158544782 158627325 - MGP_C3HHeJ_P0058205 Pigu protein_coding protein_coding MGP_C3HHeJ_T0058206.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158544783 158627319 - MGP_C3HHeJ_P0058206 Pigu protein_coding protein_coding MGP_C3HHeJ_T0058207.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158568471 158571845 - Pigu protein_coding processed_transcript MGP_C3HHeJ_T0058208.1 MGP_C3HHeJ_G0026450.1 mouse_genomes_project 2 158601687 158627314 - Pigu protein_coding retained_intron MGP_C3HHeJ_T0057903.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154628891 154670786 - MGP_C3HHeJ_P0057903 Snph protein_coding protein_coding MGP_C3HHeJ_T0057904.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154628891 154670810 - MGP_C3HHeJ_P0057904 Snph protein_coding protein_coding MGP_C3HHeJ_T0057905.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154628906 154670804 - MGP_C3HHeJ_P0057905 Snph protein_coding protein_coding MGP_C3HHeJ_T0057906.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154630067 154670830 - MGP_C3HHeJ_P0057906 Snph protein_coding protein_coding MGP_C3HHeJ_T0057907.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154635497 154670708 - MGP_C3HHeJ_P0057907 Snph protein_coding protein_coding MGP_C3HHeJ_T0057908.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639158 154670763 - Snph protein_coding retained_intron MGP_C3HHeJ_T0057909.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639321 154670777 - MGP_C3HHeJ_P0057909 Snph protein_coding protein_coding MGP_C3HHeJ_T0057910.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639338 154670798 - MGP_C3HHeJ_P0057910 Snph protein_coding protein_coding MGP_C3HHeJ_T0057911.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154639546 154670810 - Snph protein_coding processed_transcript MGP_C3HHeJ_T0057912.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154659461 154670804 - Snph protein_coding processed_transcript MGP_C3HHeJ_T0057913.1 MGP_C3HHeJ_G0026360.1 mouse_genomes_project 2 154669969 154670790 - Snph protein_coding retained_intron MGP_C3HHeJ_T0003952.1 MGP_C3HHeJ_G0003513.1 mouse_genomes_project 2 74703528 74885676 + 2600014E21Rik antisense antisense MGP_C3HHeJ_T0013439.1 MGP_C3HHeJ_G0011543.1 mouse_genomes_project 2 66142562 66143055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052379.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12454985 12490405 + MGP_C3HHeJ_P0052379 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0052381.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12460830 12490409 + MGP_C3HHeJ_P0052381 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0052382.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12460877 12484548 + MGP_C3HHeJ_P0052382 Arl5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052383.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12460937 12485524 + MGP_C3HHeJ_P0052383 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0052384.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12476091 12484558 + MGP_C3HHeJ_P0052384 Arl5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052385.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12477914 12481124 + Arl5b protein_coding retained_intron MGP_C3HHeJ_T0052386.1 MGP_C3HHeJ_G0025099.1 mouse_genomes_project 2 12482951 12490405 + MGP_C3HHeJ_P0052386 Arl5b protein_coding protein_coding MGP_C3HHeJ_T0010372.1 MGP_C3HHeJ_G0008505.1 mouse_genomes_project 2 132176545 132176662 - miRNA miRNA MGP_C3HHeJ_T0057687.1 MGP_C3HHeJ_G0026302.1 mouse_genomes_project 2 147009656 147040647 - MGP_C3HHeJ_P0057687 Ovol2 protein_coding protein_coding MGP_C3HHeJ_T0057688.1 MGP_C3HHeJ_G0026302.1 mouse_genomes_project 2 147009656 147041098 - MGP_C3HHeJ_P0057688 Ovol2 protein_coding protein_coding MGP_C3HHeJ_T0057689.1 MGP_C3HHeJ_G0026302.1 mouse_genomes_project 2 147022254 147040278 - Ovol2 protein_coding processed_transcript MGP_C3HHeJ_T0056338.1 MGP_C3HHeJ_G0025998.1 mouse_genomes_project 2 113255514 113256468 - MGP_C3HHeJ_P0056338 Olfr1312 protein_coding protein_coding MGP_C3HHeJ_T0058222.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158772732 158798136 - MGP_C3HHeJ_P0058222 Ggt7 protein_coding protein_coding MGP_C3HHeJ_T0058223.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158777314 158781750 - Ggt7 protein_coding retained_intron MGP_C3HHeJ_T0058224.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158778383 158785831 - Ggt7 protein_coding retained_intron MGP_C3HHeJ_T0058225.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158783350 158789630 - MGP_C3HHeJ_P0058225 Ggt7 protein_coding protein_coding MGP_C3HHeJ_T0058226.1 MGP_C3HHeJ_G0026453.1 mouse_genomes_project 2 158787459 158801656 - MGP_C3HHeJ_P0058226 Ggt7 protein_coding protein_coding MGP_C3HHeJ_T0013419.1 MGP_C3HHeJ_G0011523.1 mouse_genomes_project 2 58311092 58311522 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054584.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58839946 58959507 - MGP_C3HHeJ_P0054584 Baz2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0054585.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58839950 59076044 - MGP_C3HHeJ_P0054585 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054586.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58840032 58947907 - MGP_C3HHeJ_P0054586 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054587.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58843772 58853124 - MGP_C3HHeJ_P0054587 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054588.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58854767 58864519 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054589.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58857497 58861138 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054590.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58865308 58888152 - MGP_C3HHeJ_P0054590 Baz2b protein_coding protein_coding MGP_C3HHeJ_T0054591.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58893397 58899980 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054592.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58918711 59076087 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054593.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58924825 59042123 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054594.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 58946268 59075939 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054595.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59028882 59168635 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054596.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59163342 59168597 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054597.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59163809 59167955 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0054598.1 MGP_C3HHeJ_G0025490.1 mouse_genomes_project 2 59163810 59168544 - Baz2b protein_coding processed_transcript MGP_C3HHeJ_T0013557.1 MGP_C3HHeJ_G0011661.1 mouse_genomes_project 2 106830234 106830390 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055119.1 MGP_C3HHeJ_G0025595.1 mouse_genomes_project 2 75960279 75966849 - MGP_C3HHeJ_P0055119 Cyct protein_coding protein_coding MGP_C3HHeJ_T0007300.1 MGP_C3HHeJ_G0005981.1 mouse_genomes_project 2 166811746 166815808 - Gm14254 lincRNA lincRNA MGP_C3HHeJ_T0052945.1 MGP_C3HHeJ_G0025207.1 mouse_genomes_project 2 23529547 23533801 - MGP_C3HHeJ_P0052945 Sohlh1 protein_coding protein_coding MGP_C3HHeJ_T0058745.1 MGP_C3HHeJ_G0026549.1 mouse_genomes_project 2 167537861 167599439 - MGP_C3HHeJ_P0058745 Rims4 protein_coding protein_coding MGP_C3HHeJ_T0013375.1 MGP_C3HHeJ_G0011479.1 mouse_genomes_project 2 43299798 43302485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013525.1 MGP_C3HHeJ_G0011629.1 mouse_genomes_project 2 94872293 94872890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055563.1 MGP_C3HHeJ_G0025799.1 mouse_genomes_project 2 89106733 89107669 + MGP_C3HHeJ_P0055563 Olfr1212 protein_coding protein_coding MGP_C3HHeJ_T0053099.1 MGP_C3HHeJ_G0025230.1 mouse_genomes_project 2 24586827 24601093 - MGP_C3HHeJ_P0053099 Abo protein_coding protein_coding MGP_C3HHeJ_T0053100.1 MGP_C3HHeJ_G0025230.1 mouse_genomes_project 2 24586827 24610614 - MGP_C3HHeJ_P0053100 Abo protein_coding protein_coding MGP_C3HHeJ_T0013513.1 MGP_C3HHeJ_G0011617.1 mouse_genomes_project 2 89358231 89359038 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056242.1 MGP_C3HHeJ_G0025952.1 mouse_genomes_project 2 106701422 106758476 + MGP_C3HHeJ_P0056242 Immp1l protein_coding protein_coding MGP_C3HHeJ_T0011404.1 MGP_C3HHeJ_G0009537.1 mouse_genomes_project 2 48583364 48583474 - Gm25223 misc_RNA misc_RNA MGP_C3HHeJ_T0055531.1 MGP_C3HHeJ_G0025769.1 mouse_genomes_project 2 88134184 88135126 - MGP_C3HHeJ_P0055531 Olfr73 protein_coding protein_coding MGP_C3HHeJ_T0007318.1 MGP_C3HHeJ_G0005995.1 mouse_genomes_project 2 171733786 171736048 + 9230111E07Rik lincRNA lincRNA MGP_C3HHeJ_T0055855.1 MGP_C3HHeJ_G0025880.1 mouse_genomes_project 2 92327730 92329614 - MGP_C3HHeJ_P0055855 Mdk protein_coding protein_coding MGP_C3HHeJ_T0055856.1 MGP_C3HHeJ_G0025880.1 mouse_genomes_project 2 92327753 92329706 - MGP_C3HHeJ_P0055856 Mdk protein_coding protein_coding MGP_C3HHeJ_T0055857.1 MGP_C3HHeJ_G0025880.1 mouse_genomes_project 2 92327891 92329625 - MGP_C3HHeJ_P0055857 Mdk protein_coding protein_coding MGP_C3HHeJ_T0057723.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147327771 147504222 + MGP_C3HHeJ_P0057723 Dtd1 protein_coding protein_coding MGP_C3HHeJ_T0057724.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147349948 147503904 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0057725.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147408966 147481116 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0057726.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147467124 147503958 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0057727.1 MGP_C3HHeJ_G0026310.1 mouse_genomes_project 2 147472522 147503739 + Dtd1 protein_coding processed_transcript MGP_C3HHeJ_T0056488.1 MGP_C3HHeJ_G0026041.1 mouse_genomes_project 2 120256498 120264996 - MGP_C3HHeJ_P0056488 protein_coding protein_coding MGP_C3HHeJ_T0056489.1 MGP_C3HHeJ_G0026041.1 mouse_genomes_project 2 120259832 120264960 - protein_coding retained_intron MGP_C3HHeJ_T0058008.1 MGP_C3HHeJ_G0026399.1 mouse_genomes_project 2 156022409 156023720 - MGP_C3HHeJ_P0058008 Foxs1 protein_coding protein_coding MGP_C3HHeJ_T0059200.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177242279 177258143 + Spo11 protein_coding retained_intron MGP_C3HHeJ_T0059201.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177244393 177258137 + MGP_C3HHeJ_P0059201 Spo11 protein_coding protein_coding MGP_C3HHeJ_T0059202.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177244400 177258139 + MGP_C3HHeJ_P0059202 Spo11 protein_coding protein_coding MGP_C3HHeJ_T0059203.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177244400 177258148 + MGP_C3HHeJ_P0059203 Spo11 protein_coding protein_coding MGP_C3HHeJ_T0059204.1 MGP_C3HHeJ_G0026668.1 mouse_genomes_project 2 177250430 177256614 + Spo11 protein_coding processed_transcript MGP_C3HHeJ_T0058688.1 MGP_C3HHeJ_G0026532.1 mouse_genomes_project 2 166635933 166664171 + MGP_C3HHeJ_P0058688 Sgk2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0058689.1 MGP_C3HHeJ_G0026532.1 mouse_genomes_project 2 166636018 166665223 + MGP_C3HHeJ_P0058689 Sgk2 protein_coding protein_coding MGP_C3HHeJ_T0058690.1 MGP_C3HHeJ_G0026532.1 mouse_genomes_project 2 166648061 166656784 + Sgk2 protein_coding retained_intron MGP_C3HHeJ_T0003985.1 MGP_C3HHeJ_G0003534.1 mouse_genomes_project 2 114962309 114982830 - 4930533B01Rik antisense antisense MGP_C3HHeJ_T0007204.1 MGP_C3HHeJ_G0005902.1 mouse_genomes_project 2 107321391 107386734 - Gm14015 lincRNA lincRNA MGP_C3HHeJ_T0052358.1 MGP_C3HHeJ_G0025096.1 mouse_genomes_project 2 11755833 11867307 + MGP_C3HHeJ_P0052358 Slc39a12 protein_coding protein_coding MGP_C3HHeJ_T0052359.1 MGP_C3HHeJ_G0025096.1 mouse_genomes_project 2 11756024 11757052 + MGP_C3HHeJ_P0052359 Slc39a12 protein_coding protein_coding MGP_C3HHeJ_T0056481.1 MGP_C3HHeJ_G0026039.1 mouse_genomes_project 2 120201892 120206753 - MGP_C3HHeJ_P0056481 Ankrd63 protein_coding protein_coding MGP_C3HHeJ_T0013550.1 MGP_C3HHeJ_G0011654.1 mouse_genomes_project 2 104571642 104571884 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057569.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036015 138123919 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057570.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036558 138124006 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057571.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036619 138259712 + Plcb4 protein_coding retained_intron MGP_C3HHeJ_T0057572.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138036715 138367730 + MGP_C3HHeJ_P0057572 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057573.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138122997 138294097 + Plcb4 protein_coding retained_intron MGP_C3HHeJ_T0057574.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138122997 138399466 + MGP_C3HHeJ_P0057574 Plcb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057575.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138146600 138292024 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057576.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138187498 138399265 + MGP_C3HHeJ_P0057576 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057577.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138254667 138400801 + MGP_C3HHeJ_P0057577 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057578.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138269584 138324018 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057579.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138326784 138335065 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057580.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138331182 138335018 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057581.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138367745 138372908 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0057582.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138372587 138400792 + MGP_C3HHeJ_P0057582 Plcb4 protein_coding protein_coding MGP_C3HHeJ_T0057583.1 MGP_C3HHeJ_G0026274.1 mouse_genomes_project 2 138393426 138394240 + Plcb4 protein_coding processed_transcript MGP_C3HHeJ_T0055699.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91389998 91396448 + MGP_C3HHeJ_P0055699 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055700.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390044 91403423 + MGP_C3HHeJ_P0055700 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055701.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390084 91391925 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055702.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390089 91396448 + MGP_C3HHeJ_P0055702 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055703.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390267 91393835 + MGP_C3HHeJ_P0055703 Psmc3 protein_coding protein_coding MGP_C3HHeJ_T0055704.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390290 91392986 + MGP_C3HHeJ_P0055704 Psmc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055705.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390371 91391708 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055706.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390467 91391543 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055707.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91390562 91391918 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0055708.1 MGP_C3HHeJ_G0025860.1 mouse_genomes_project 2 91394098 91396450 + Psmc3 protein_coding processed_transcript MGP_C3HHeJ_T0057321.1 MGP_C3HHeJ_G0026221.1 mouse_genomes_project 2 132579533 132580345 + MGP_C3HHeJ_P0057321 1700020A23Rik protein_coding protein_coding MGP_C3HHeJ_T0057322.1 MGP_C3HHeJ_G0026221.1 mouse_genomes_project 2 132579539 132580293 + MGP_C3HHeJ_P0057322 1700020A23Rik protein_coding protein_coding MGP_C3HHeJ_T0057323.1 MGP_C3HHeJ_G0026221.1 mouse_genomes_project 2 132579560 132580349 + MGP_C3HHeJ_P0057323 1700020A23Rik protein_coding protein_coding MGP_C3HHeJ_T0054675.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518257 61595149 - MGP_C3HHeJ_P0054675 Fap protein_coding protein_coding MGP_C3HHeJ_T0054676.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518427 61595054 - Fap protein_coding processed_transcript MGP_C3HHeJ_T0054677.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518437 61520737 - MGP_C3HHeJ_P0054677 Fap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054678.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518498 61594925 - MGP_C3HHeJ_P0054678 Fap protein_coding protein_coding MGP_C3HHeJ_T0054679.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518498 61594925 - MGP_C3HHeJ_P0054679 Fap protein_coding protein_coding MGP_C3HHeJ_T0054680.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61518498 61594925 - MGP_C3HHeJ_P0054680 Fap protein_coding protein_coding MGP_C3HHeJ_T0054681.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61545853 61584311 - Fap protein_coding retained_intron MGP_C3HHeJ_T0054682.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61554287 61594997 - Fap protein_coding retained_intron MGP_C3HHeJ_T0054683.1 MGP_C3HHeJ_G0025503.1 mouse_genomes_project 2 61567658 61594634 - MGP_C3HHeJ_P0054683 Fap protein_coding protein_coding MGP_C3HHeJ_T0057654.1 MGP_C3HHeJ_G0026292.1 mouse_genomes_project 2 145274946 145566239 - MGP_C3HHeJ_P0057654 Kif16b protein_coding protein_coding MGP_C3HHeJ_T0057655.1 MGP_C3HHeJ_G0026292.1 mouse_genomes_project 2 145276183 145309100 - Kif16b protein_coding retained_intron MGP_C3HHeJ_T0057656.1 MGP_C3HHeJ_G0026292.1 mouse_genomes_project 2 145277230 145566079 - MGP_C3HHeJ_P0057656 Kif16b protein_coding unknown_likely_coding MGP_C3HHeJ_T0007198.1 MGP_C3HHeJ_G0005897.1 mouse_genomes_project 2 104101501 104112901 - BC016548 lincRNA lincRNA MGP_C3HHeJ_T0007199.1 MGP_C3HHeJ_G0005897.1 mouse_genomes_project 2 104107835 104112899 - BC016548 lincRNA lincRNA MGP_C3HHeJ_T0098393.1 MGP_C3HHeJ_G0036599.1 mouse_genomes_project 2 1301516 1303924 + Gm36988 sense_intronic sense_intronic MGP_C3HHeJ_T0058730.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350156 167414792 + Pkig protein_coding retained_intron MGP_C3HHeJ_T0058731.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350156 167417192 + MGP_C3HHeJ_P0058731 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058732.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350169 167417188 + MGP_C3HHeJ_P0058732 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058733.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350185 167416722 + MGP_C3HHeJ_P0058733 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058734.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350228 167412232 + MGP_C3HHeJ_P0058734 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058735.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350247 167416825 + MGP_C3HHeJ_P0058735 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058736.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167350250 167416552 + MGP_C3HHeJ_P0058736 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058737.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167353269 167416507 + MGP_C3HHeJ_P0058737 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058738.1 MGP_C3HHeJ_G0026545.1 mouse_genomes_project 2 167385716 167417186 + MGP_C3HHeJ_P0058738 Pkig protein_coding protein_coding MGP_C3HHeJ_T0058000.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155935982 155985681 + MGP_C3HHeJ_P0058000 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058001.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155935982 155985681 + MGP_C3HHeJ_P0058001 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058002.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155935996 155985014 + MGP_C3HHeJ_P0058002 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058003.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155936013 155985014 + MGP_C3HHeJ_P0058003 Tpx2 protein_coding protein_coding MGP_C3HHeJ_T0058004.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155936100 155944031 + Tpx2 protein_coding processed_transcript MGP_C3HHeJ_T0058005.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155959211 155971586 + Tpx2 protein_coding retained_intron MGP_C3HHeJ_T0058006.1 MGP_C3HHeJ_G0026397.1 mouse_genomes_project 2 155972788 155974890 + Tpx2 protein_coding retained_intron MGP_C3HHeJ_T0059196.1 MGP_C3HHeJ_G0026665.1 mouse_genomes_project 2 176688155 176689967 + MGP_C3HHeJ_P0059196 Fam209 protein_coding protein_coding MGP_C3HHeJ_T0057879.1 MGP_C3HHeJ_G0026355.1 mouse_genomes_project 2 153997406 154007622 - MGP_C3HHeJ_P0057879 protein_coding protein_coding MGP_C3HHeJ_T0057881.1 MGP_C3HHeJ_G0026355.1 mouse_genomes_project 2 153998478 154007586 - protein_coding processed_transcript MGP_C3HHeJ_T0052664.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613465 22698772 + MGP_C3HHeJ_P0052664 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052665.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613505 22698772 + MGP_C3HHeJ_P0052665 Pnpla7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052666.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613520 22619665 + MGP_C3HHeJ_P0052666 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052667.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613521 22634215 + MGP_C3HHeJ_P0052667 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052668.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613533 22617733 + Pnpla7 protein_coding processed_transcript MGP_C3HHeJ_T0052669.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22613580 22683989 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052670.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22619745 22626223 + Pnpla7 protein_coding processed_transcript MGP_C3HHeJ_T0052671.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22634569 22637575 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052672.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22635051 22654577 + MGP_C3HHeJ_P0052672 Pnpla7 protein_coding protein_coding MGP_C3HHeJ_T0052673.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22684163 22698772 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052674.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696066 22696805 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052675.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696380 22698483 + MGP_C3HHeJ_P0052675 Pnpla7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052676.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696435 22697051 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052677.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22696622 22697566 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0052678.1 MGP_C3HHeJ_G0025151.1 mouse_genomes_project 2 22697868 22698570 + Pnpla7 protein_coding retained_intron MGP_C3HHeJ_T0055082.1 MGP_C3HHeJ_G0025581.1 mouse_genomes_project 2 74220082 74222564 + MGP_C3HHeJ_P0055082 Hoxd9 protein_coding protein_coding MGP_C3HHeJ_T0052832.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23093948 23095865 + MGP_C3HHeJ_P0052832 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052833.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23094060 23097053 + MGP_C3HHeJ_P0052833 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052834.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23094234 23097056 + MGP_C3HHeJ_P0052834 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052835.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23094375 23097056 + MGP_C3HHeJ_P0052835 Fut7 protein_coding protein_coding MGP_C3HHeJ_T0052836.1 MGP_C3HHeJ_G0025179.1 mouse_genomes_project 2 23095329 23095773 + Fut7 protein_coding processed_transcript MGP_C3HHeJ_T0058104.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157184660 157192472 + MGP_C3HHeJ_P0058104 Bpifa2 protein_coding protein_coding MGP_C3HHeJ_T0058105.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157184671 157190837 + MGP_C3HHeJ_P0058105 Bpifa2 protein_coding protein_coding MGP_C3HHeJ_T0058106.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157190105 157192003 + Bpifa2 protein_coding retained_intron MGP_C3HHeJ_T0058107.1 MGP_C3HHeJ_G0026423.1 mouse_genomes_project 2 157190988 157192469 + Bpifa2 protein_coding retained_intron MGP_C3HHeJ_T0057815.1 MGP_C3HHeJ_G0026335.1 mouse_genomes_project 2 151655055 151661906 + MGP_C3HHeJ_P0057815 Cst8 protein_coding protein_coding MGP_C3HHeJ_T0057816.1 MGP_C3HHeJ_G0026335.1 mouse_genomes_project 2 151655104 151661906 + MGP_C3HHeJ_P0057816 Cst8 protein_coding protein_coding MGP_C3HHeJ_T0057817.1 MGP_C3HHeJ_G0026335.1 mouse_genomes_project 2 151655173 151661906 + Cst8 protein_coding processed_transcript MGP_C3HHeJ_T0007076.1 MGP_C3HHeJ_G0005799.1 mouse_genomes_project 2 23263254 23267923 + Gm26702 lincRNA lincRNA MGP_C3HHeJ_T0055803.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91819765 91841508 + Lrp4 protein_coding processed_transcript MGP_C3HHeJ_T0055804.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91819765 91880758 + MGP_C3HHeJ_P0055804 Lrp4 protein_coding protein_coding MGP_C3HHeJ_T0055805.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91838476 91843092 + Lrp4 protein_coding processed_transcript MGP_C3HHeJ_T0055806.1 MGP_C3HHeJ_G0025871.1 mouse_genomes_project 2 91838539 91841063 + Lrp4 protein_coding processed_transcript MGP_C3HHeJ_T0101928.1 MGP_C3HHeJ_G0039893.1 mouse_genomes_project 2 141355125 141355710 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100455.1 MGP_C3HHeJ_G0038649.1 mouse_genomes_project 2 52928150 52928283 + Gm22298 snoRNA snoRNA MGP_C3HHeJ_T0057476.1 MGP_C3HHeJ_G0026252.1 mouse_genomes_project 2 134107283 134113329 - MGP_C3HHeJ_P0057476 Erv3 protein_coding protein_coding MGP_C3HHeJ_T0098280.1 MGP_C3HHeJ_G0036492.1 mouse_genomes_project 2 50203093 50203223 - Gm23505 scaRNA scaRNA MGP_C3HHeJ_T0053641.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158033 29225530 + MGP_C3HHeJ_P0053641 Gpr107 protein_coding protein_coding MGP_C3HHeJ_T0053642.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158256 29174878 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053643.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158274 29197801 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053644.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29158274 29161527 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053645.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29177988 29190539 + Gpr107 protein_coding processed_transcript MGP_C3HHeJ_T0053646.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29190964 29216215 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053647.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29191294 29194438 + Gpr107 protein_coding processed_transcript MGP_C3HHeJ_T0053648.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29194456 29216397 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053649.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29203948 29214764 + Gpr107 protein_coding processed_transcript MGP_C3HHeJ_T0053650.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29213688 29217119 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0053651.1 MGP_C3HHeJ_G0025317.1 mouse_genomes_project 2 29217156 29221623 + Gpr107 protein_coding retained_intron MGP_C3HHeJ_T0058467.1 MGP_C3HHeJ_G0026488.1 mouse_genomes_project 2 160221583 160236366 - MGP_C3HHeJ_P0058467 Sla2 protein_coding protein_coding MGP_C3HHeJ_T0058469.1 MGP_C3HHeJ_G0026488.1 mouse_genomes_project 2 160222048 160236480 - MGP_C3HHeJ_P0058469 Sla2 protein_coding protein_coding MGP_C3HHeJ_T0007075.1 MGP_C3HHeJ_G0005798.1 mouse_genomes_project 2 22978508 22988718 - lincRNA lincRNA MGP_C3HHeJ_T0058130.1 MGP_C3HHeJ_G0026432.1 mouse_genomes_project 2 157567860 157607843 - MGP_C3HHeJ_P0058130 Snta1 protein_coding protein_coding MGP_C3HHeJ_T0058131.1 MGP_C3HHeJ_G0026432.1 mouse_genomes_project 2 157567860 157607825 - MGP_C3HHeJ_P0058131 Snta1 protein_coding protein_coding MGP_C3HHeJ_T0058132.1 MGP_C3HHeJ_G0026432.1 mouse_genomes_project 2 157597918 157607724 - Snta1 protein_coding processed_transcript MGP_C3HHeJ_T0007111.1 MGP_C3HHeJ_G0005825.1 mouse_genomes_project 2 44290868 44295853 - Gm13467 lincRNA lincRNA MGP_C3HHeJ_T0056628.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121543868 121599829 + MGP_C3HHeJ_P0056628 Mapkbp1 protein_coding protein_coding MGP_C3HHeJ_T0056629.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121544223 121599823 + MGP_C3HHeJ_P0056629 Mapkbp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056630.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121583192 121584601 + Mapkbp1 protein_coding retained_intron MGP_C3HHeJ_T0056631.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121584549 121587126 + Mapkbp1 protein_coding retained_intron MGP_C3HHeJ_T0056632.1 MGP_C3HHeJ_G0026075.1 mouse_genomes_project 2 121594498 121595472 + Mapkbp1 protein_coding retained_intron MGP_C3HHeJ_T0010330.1 MGP_C3HHeJ_G0008463.1 mouse_genomes_project 2 55682851 55682948 + Mir195b miRNA miRNA MGP_C3HHeJ_T0097894.1 MGP_C3HHeJ_G0036106.1 mouse_genomes_project 2 91249723 91249996 + pseudogene pseudogene MGP_C3HHeJ_T0056308.1 MGP_C3HHeJ_G0025969.1 mouse_genomes_project 2 112040796 112057992 - MGP_C3HHeJ_P0056308 Gm13941 protein_coding protein_coding MGP_C3HHeJ_T0013506.1 MGP_C3HHeJ_G0011610.1 mouse_genomes_project 2 87620794 87621087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007051.1 MGP_C3HHeJ_G0005781.1 mouse_genomes_project 2 6519130 6577345 + Gm13219 lincRNA lincRNA MGP_C3HHeJ_T0007052.1 MGP_C3HHeJ_G0005781.1 mouse_genomes_project 2 6519189 6618469 + Gm13219 lincRNA lincRNA MGP_C3HHeJ_T0007053.1 MGP_C3HHeJ_G0005781.1 mouse_genomes_project 2 6519219 6578706 + Gm13219 lincRNA lincRNA MGP_C3HHeJ_T0055911.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92803521 92810060 + Pex16 protein_coding processed_transcript MGP_C3HHeJ_T0055912.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92804151 92810061 + MGP_C3HHeJ_P0055912 Pex16 protein_coding protein_coding MGP_C3HHeJ_T0055913.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92804338 92808166 + Pex16 protein_coding processed_transcript MGP_C3HHeJ_T0055914.1 MGP_C3HHeJ_G0025886.1 mouse_genomes_project 2 92804404 92805549 + Pex16 protein_coding processed_transcript MGP_C3HHeJ_T0052415.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15504831 15672324 + MGP_C3HHeJ_P0052415 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052416.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15513983 15575582 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052417.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514225 15672325 + MGP_C3HHeJ_P0052417 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052418.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514273 15579352 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052419.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514276 15670907 + MGP_C3HHeJ_P0052419 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052420.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514394 15577046 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052421.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514423 15560627 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052422.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15514430 15514845 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052423.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15533835 15667087 + MGP_C3HHeJ_P0052423 Mllt10 protein_coding protein_coding MGP_C3HHeJ_T0052424.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15576942 15616152 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0052425.1 MGP_C3HHeJ_G0025106.1 mouse_genomes_project 2 15626892 15647280 + Mllt10 protein_coding processed_transcript MGP_C3HHeJ_T0054887.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69927038 69940889 + MGP_C3HHeJ_P0054887 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054888.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935700 69977976 + MGP_C3HHeJ_P0054888 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054889.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935700 69962802 + MGP_C3HHeJ_P0054889 Gad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054890.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935821 69950770 + Gad1 protein_coding retained_intron MGP_C3HHeJ_T0054891.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69935854 69958241 + MGP_C3HHeJ_P0054891 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054892.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69936556 69958762 + MGP_C3HHeJ_P0054892 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054893.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69937099 69959587 + MGP_C3HHeJ_P0054893 Gad1 protein_coding protein_coding MGP_C3HHeJ_T0054894.1 MGP_C3HHeJ_G0025545.1 mouse_genomes_project 2 69940034 69977974 + Gad1 protein_coding processed_transcript MGP_C3HHeJ_T0100512.1 MGP_C3HHeJ_G0038706.1 mouse_genomes_project 2 170966609 170966702 + Gm25878 snoRNA snoRNA MGP_C3HHeJ_T0101894.1 MGP_C3HHeJ_G0039859.1 mouse_genomes_project 2 85602813 85603501 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0055919.1 MGP_C3HHeJ_G0025888.1 mouse_genomes_project 2 92812519 92821569 - MGP_C3HHeJ_P0055919 Mapk8ip1 protein_coding protein_coding MGP_C3HHeJ_T0055920.1 MGP_C3HHeJ_G0025888.1 mouse_genomes_project 2 92812523 92830051 - MGP_C3HHeJ_P0055920 Mapk8ip1 protein_coding protein_coding MGP_C3HHeJ_T0055921.1 MGP_C3HHeJ_G0025888.1 mouse_genomes_project 2 92818739 92821570 - Mapk8ip1 protein_coding processed_transcript MGP_C3HHeJ_T0059636.1 MGP_C3HHeJ_G0026755.1 mouse_genomes_project 2 186482729 186489221 + MGP_C3HHeJ_P0059636 Polr3k protein_coding protein_coding MGP_C3HHeJ_T0059637.1 MGP_C3HHeJ_G0026755.1 mouse_genomes_project 2 186482752 186484602 + Polr3k protein_coding retained_intron MGP_C3HHeJ_T0007189.1 MGP_C3HHeJ_G0005890.1 mouse_genomes_project 2 96322899 96325410 + Gm13799 lincRNA lincRNA MGP_C3HHeJ_T0055115.1 MGP_C3HHeJ_G0025593.1 mouse_genomes_project 2 75567370 75571797 - MGP_C3HHeJ_P0055115 protein_coding protein_coding MGP_C3HHeJ_T0057282.1 MGP_C3HHeJ_G0026211.1 mouse_genomes_project 2 131958357 131987105 + MGP_C3HHeJ_P0057282 protein_coding protein_coding MGP_C3HHeJ_T0057283.1 MGP_C3HHeJ_G0026211.1 mouse_genomes_project 2 131958357 131990417 + MGP_C3HHeJ_P0057283 protein_coding protein_coding MGP_C3HHeJ_T0013721.1 MGP_C3HHeJ_G0011825.1 mouse_genomes_project 2 172226908 172227338 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052030.1 MGP_C3HHeJ_G0025043.1 mouse_genomes_project 2 490064 503461 + Cdnf protein_coding processed_transcript MGP_C3HHeJ_T0052031.1 MGP_C3HHeJ_G0025043.1 mouse_genomes_project 2 490099 506015 + MGP_C3HHeJ_P0052031 Cdnf protein_coding protein_coding MGP_C3HHeJ_T0052032.1 MGP_C3HHeJ_G0025043.1 mouse_genomes_project 2 490918 503539 + Cdnf protein_coding processed_transcript MGP_C3HHeJ_T0004058.1 MGP_C3HHeJ_G0003587.1 mouse_genomes_project 2 156081447 156083060 - Gm14199 antisense antisense MGP_C3HHeJ_T0013570.1 MGP_C3HHeJ_G0011674.1 mouse_genomes_project 2 112576725 112625401 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100511.1 MGP_C3HHeJ_G0038705.1 mouse_genomes_project 2 168365551 168365682 + Gm24473 snoRNA snoRNA MGP_C3HHeJ_T0007044.1 MGP_C3HHeJ_G0005775.1 mouse_genomes_project 2 3291296 3292617 - Gm13383 lincRNA lincRNA MGP_C3HHeJ_T0004096.1 MGP_C3HHeJ_G0003616.1 mouse_genomes_project 2 170831713 170832483 + Gm17096 antisense antisense MGP_C3HHeJ_T0017574.1 MGP_C3HHeJ_G0015198.1 mouse_genomes_project 2 86848638 86849957 - Gm13723 processed_transcript processed_transcript MGP_C3HHeJ_T0059228.1 MGP_C3HHeJ_G0026676.1 mouse_genomes_project 2 177873463 177883196 - MGP_C3HHeJ_P0059228 Ankrd60 protein_coding protein_coding MGP_C3HHeJ_T0059229.1 MGP_C3HHeJ_G0026676.1 mouse_genomes_project 2 177873501 177883029 - MGP_C3HHeJ_P0059229 Ankrd60 protein_coding protein_coding MGP_C3HHeJ_T0059230.1 MGP_C3HHeJ_G0026676.1 mouse_genomes_project 2 177877182 177883104 - Ankrd60 protein_coding processed_transcript MGP_C3HHeJ_T0007304.1 MGP_C3HHeJ_G0005985.1 mouse_genomes_project 2 169811285 169823080 - Gm11464 lincRNA lincRNA MGP_C3HHeJ_T0017511.1 MGP_C3HHeJ_G0015157.1 mouse_genomes_project 2 11428862 11432465 - Stamos processed_transcript antisense MGP_C3HHeJ_T0017512.1 MGP_C3HHeJ_G0015157.1 mouse_genomes_project 2 11431018 11432379 - Stamos processed_transcript retained_intron MGP_C3HHeJ_T0054990.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71743962 71902990 + MGP_C3HHeJ_P0054990 Zak protein_coding protein_coding MGP_C3HHeJ_T0054991.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744053 71867610 + MGP_C3HHeJ_P0054991 Zak protein_coding protein_coding MGP_C3HHeJ_T0054992.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744089 71859350 + Zak protein_coding retained_intron MGP_C3HHeJ_T0054993.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744102 71849956 + Zak protein_coding retained_intron MGP_C3HHeJ_T0054994.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71744119 71825320 + Zak protein_coding retained_intron MGP_C3HHeJ_T0054995.1 MGP_C3HHeJ_G0025561.1 mouse_genomes_project 2 71757398 71816099 + MGP_C3HHeJ_P0054995 Zak protein_coding protein_coding MGP_C3HHeJ_T0057364.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132871228 132875676 - Slc4a11 protein_coding retained_intron MGP_C3HHeJ_T0057365.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132871228 132885282 - MGP_C3HHeJ_P0057365 Slc4a11 protein_coding protein_coding MGP_C3HHeJ_T0057366.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132873691 132885232 - Slc4a11 protein_coding retained_intron MGP_C3HHeJ_T0057367.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132878574 132879724 - Slc4a11 protein_coding retained_intron MGP_C3HHeJ_T0057368.1 MGP_C3HHeJ_G0026234.1 mouse_genomes_project 2 132879290 132885232 - MGP_C3HHeJ_P0057368 Slc4a11 protein_coding protein_coding MGP_C3HHeJ_T0013627.1 MGP_C3HHeJ_G0011731.1 mouse_genomes_project 2 138807780 138808484 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101919.1 MGP_C3HHeJ_G0039884.1 mouse_genomes_project 2 90554311 90555236 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000994.1 MGP_C3HHeJ_G0000931.1 mouse_genomes_project 2 8409134 8410063 + TEC TEC MGP_C3HHeJ_T0007305.1 MGP_C3HHeJ_G0005986.1 mouse_genomes_project 2 170038302 170039372 - Gm11466 lincRNA lincRNA MGP_C3HHeJ_T0011398.1 MGP_C3HHeJ_G0009531.1 mouse_genomes_project 2 34356966 34357109 - Gm27953 misc_RNA misc_RNA MGP_C3HHeJ_T0007345.1 MGP_C3HHeJ_G0006019.1 mouse_genomes_project 2 177696341 177697494 + Gm14642 lincRNA lincRNA MGP_C3HHeJ_T0007159.1 MGP_C3HHeJ_G0005866.1 mouse_genomes_project 2 75002646 75010769 + Gm13658 lincRNA lincRNA MGP_C3HHeJ_T0013292.1 MGP_C3HHeJ_G0011396.1 mouse_genomes_project 2 12800743 12801716 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013406.1 MGP_C3HHeJ_G0011510.1 mouse_genomes_project 2 54651543 54652955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059105.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172162431 172188312 - MGP_C3HHeJ_P0059105 Adnp protein_coding protein_coding MGP_C3HHeJ_T0059106.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172162431 172188502 - MGP_C3HHeJ_P0059106 Adnp protein_coding protein_coding MGP_C3HHeJ_T0059108.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172166413 172188099 - Adnp protein_coding processed_transcript MGP_C3HHeJ_T0059109.1 MGP_C3HHeJ_G0026640.1 mouse_genomes_project 2 172185746 172188099 - Adnp protein_coding retained_intron MGP_C3HHeJ_T0054323.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030490 42038560 + Kynu protein_coding processed_transcript MGP_C3HHeJ_T0054324.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030490 42166654 + MGP_C3HHeJ_P0054324 Kynu protein_coding protein_coding MGP_C3HHeJ_T0054325.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030503 42164152 + MGP_C3HHeJ_P0054325 Kynu protein_coding protein_coding MGP_C3HHeJ_T0054326.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42030515 42117458 + MGP_C3HHeJ_P0054326 Kynu protein_coding protein_coding MGP_C3HHeJ_T0054327.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42077447 42084027 + Kynu protein_coding processed_transcript MGP_C3HHeJ_T0054328.1 MGP_C3HHeJ_G0025447.1 mouse_genomes_project 2 42154327 42165360 + Kynu protein_coding processed_transcript MGP_C3HHeJ_T0013708.1 MGP_C3HHeJ_G0011812.1 mouse_genomes_project 2 166628791 166631543 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013356.1 MGP_C3HHeJ_G0011460.1 mouse_genomes_project 2 35955399 35955775 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054689.1 MGP_C3HHeJ_G0025505.1 mouse_genomes_project 2 61686075 61719279 + MGP_C3HHeJ_P0054689 Gca protein_coding protein_coding MGP_C3HHeJ_T0054690.1 MGP_C3HHeJ_G0025505.1 mouse_genomes_project 2 61709516 61715630 + Gca protein_coding processed_transcript MGP_C3HHeJ_T0055756.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526441 91536977 - Nr1h3 protein_coding retained_intron MGP_C3HHeJ_T0055757.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526441 91537068 - MGP_C3HHeJ_P0055757 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055758.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526441 91536987 - MGP_C3HHeJ_P0055758 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055759.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526472 91537103 - MGP_C3HHeJ_P0055759 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055760.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526472 91536837 - MGP_C3HHeJ_P0055760 Nr1h3 protein_coding protein_coding MGP_C3HHeJ_T0055761.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91526586 91534698 - Nr1h3 protein_coding retained_intron MGP_C3HHeJ_T0055762.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91532457 91533208 - Nr1h3 protein_coding retained_intron MGP_C3HHeJ_T0055763.1 MGP_C3HHeJ_G0025865.1 mouse_genomes_project 2 91533984 91545858 - Nr1h3 protein_coding processed_transcript MGP_C3HHeJ_T0010269.1 MGP_C3HHeJ_G0008402.1 mouse_genomes_project 2 7711818 7711915 + Mir669a-2 miRNA miRNA MGP_C3HHeJ_T0098388.1 MGP_C3HHeJ_G0036594.1 mouse_genomes_project 2 1076311 1079661 + Gm10862 sense_intronic sense_intronic MGP_C3HHeJ_T0101921.1 MGP_C3HHeJ_G0039886.1 mouse_genomes_project 2 90746648 90761581 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010299.1 MGP_C3HHeJ_G0008432.1 mouse_genomes_project 2 24210238 24210299 - Mir6996 miRNA miRNA MGP_C3HHeJ_T0101922.1 MGP_C3HHeJ_G0039887.1 mouse_genomes_project 2 107992394 107992587 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101881.1 MGP_C3HHeJ_G0039846.1 mouse_genomes_project 2 35122692 35123274 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0056063.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103363642 103500106 + MGP_C3HHeJ_P0056063 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056064.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103364206 103444618 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056065.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103364241 103444615 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056066.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103364264 103487459 + MGP_C3HHeJ_P0056066 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056067.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103380323 103444615 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056068.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103414053 103448523 + MGP_C3HHeJ_P0056068 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056069.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103414135 103491092 + MGP_C3HHeJ_P0056069 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056070.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103414135 103487468 + MGP_C3HHeJ_P0056070 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056071.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103427654 103444611 + Slc1a2 protein_coding processed_transcript MGP_C3HHeJ_T0056072.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103462501 103486946 + MGP_C3HHeJ_P0056072 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0056073.1 MGP_C3HHeJ_G0025919.1 mouse_genomes_project 2 103469600 103490906 + MGP_C3HHeJ_P0056073 Slc1a2 protein_coding protein_coding MGP_C3HHeJ_T0052333.1 MGP_C3HHeJ_G0025089.1 mouse_genomes_project 2 10849408 10887065 - MGP_C3HHeJ_P0052333 Trdmt1 protein_coding protein_coding MGP_C3HHeJ_T0052334.1 MGP_C3HHeJ_G0025089.1 mouse_genomes_project 2 10856508 10887047 - Trdmt1 protein_coding processed_transcript MGP_C3HHeJ_T0052335.1 MGP_C3HHeJ_G0025089.1 mouse_genomes_project 2 10864546 10887060 - MGP_C3HHeJ_P0052335 Trdmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013397.1 MGP_C3HHeJ_G0011501.1 mouse_genomes_project 2 51122855 51124840 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013467.1 MGP_C3HHeJ_G0011571.1 mouse_genomes_project 2 76963895 76964501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055569.1 MGP_C3HHeJ_G0025803.1 mouse_genomes_project 2 89145293 89146232 - MGP_C3HHeJ_P0055569 Olfr1215 protein_coding protein_coding MGP_C3HHeJ_T0013314.1 MGP_C3HHeJ_G0011418.1 mouse_genomes_project 2 20214501 20214862 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056950.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124027161 124031821 - MGP_C3HHeJ_P0056950 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056951.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124028521 124038618 - MGP_C3HHeJ_P0056951 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056952.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124028524 124030684 - Duoxa1 protein_coding processed_transcript MGP_C3HHeJ_T0056953.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124028717 124031799 - MGP_C3HHeJ_P0056953 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056954.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124029741 124038655 - MGP_C3HHeJ_P0056954 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056955.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124030187 124038569 - MGP_C3HHeJ_P0056955 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0056956.1 MGP_C3HHeJ_G0026131.1 mouse_genomes_project 2 124030566 124038576 - MGP_C3HHeJ_P0056956 Duoxa1 protein_coding protein_coding MGP_C3HHeJ_T0004055.1 MGP_C3HHeJ_G0003584.1 mouse_genomes_project 2 155132236 155134190 - AA387200 antisense antisense MGP_C3HHeJ_T0013662.1 MGP_C3HHeJ_G0011766.1 mouse_genomes_project 2 152213537 152215255 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013670.1 MGP_C3HHeJ_G0011774.1 mouse_genomes_project 2 154738390 154738841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056305.1 MGP_C3HHeJ_G0025968.1 mouse_genomes_project 2 111679364 111701730 + MGP_C3HHeJ_P0056305 Muc15 protein_coding protein_coding MGP_C3HHeJ_T0056306.1 MGP_C3HHeJ_G0025968.1 mouse_genomes_project 2 111679635 111701730 + MGP_C3HHeJ_P0056306 Muc15 protein_coding protein_coding MGP_C3HHeJ_T0056307.1 MGP_C3HHeJ_G0025968.1 mouse_genomes_project 2 111679672 111699782 + MGP_C3HHeJ_P0056307 Muc15 protein_coding protein_coding MGP_C3HHeJ_T0013533.1 MGP_C3HHeJ_G0011637.1 mouse_genomes_project 2 98879475 98879647 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057678.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146946865 146969501 - MGP_C3HHeJ_P0057678 Snx5 protein_coding protein_coding MGP_C3HHeJ_T0057679.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146946865 146969167 - MGP_C3HHeJ_P0057679 Snx5 protein_coding protein_coding MGP_C3HHeJ_T0057680.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146947806 146951411 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057681.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146947858 146950383 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057682.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146951430 146953109 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057683.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146952396 146953088 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057684.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146952499 146959347 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0057685.1 MGP_C3HHeJ_G0026300.1 mouse_genomes_project 2 146968048 146969379 - Snx5 protein_coding processed_transcript MGP_C3HHeJ_T0055116.1 MGP_C3HHeJ_G0025594.1 mouse_genomes_project 2 75581068 75597992 - MGP_C3HHeJ_P0055116 Pde11a protein_coding protein_coding MGP_C3HHeJ_T0055117.1 MGP_C3HHeJ_G0025594.1 mouse_genomes_project 2 75581827 75938899 - MGP_C3HHeJ_P0055117 Pde11a protein_coding protein_coding MGP_C3HHeJ_T0055118.1 MGP_C3HHeJ_G0025594.1 mouse_genomes_project 2 75620258 75817785 - MGP_C3HHeJ_P0055118 Pde11a protein_coding protein_coding MGP_C3HHeJ_T0058030.1 MGP_C3HHeJ_G0026403.1 mouse_genomes_project 2 156132867 156156894 + MGP_C3HHeJ_P0058030 Xkr7 protein_coding protein_coding MGP_C3HHeJ_T0053912.1 MGP_C3HHeJ_G0025357.1 mouse_genomes_project 2 30889190 30891002 + MGP_C3HHeJ_P0053912 Ptrh1 protein_coding protein_coding MGP_C3HHeJ_T0053913.1 MGP_C3HHeJ_G0025357.1 mouse_genomes_project 2 30889220 30890160 + Ptrh1 protein_coding processed_transcript MGP_C3HHeJ_T0053914.1 MGP_C3HHeJ_G0025357.1 mouse_genomes_project 2 30889269 30890854 + Ptrh1 protein_coding retained_intron MGP_C3HHeJ_T0056558.1 MGP_C3HHeJ_G0026057.1 mouse_genomes_project 2 120737829 120750753 - MGP_C3HHeJ_P0056558 Ppp1r14d protein_coding protein_coding MGP_C3HHeJ_T0056559.1 MGP_C3HHeJ_G0026057.1 mouse_genomes_project 2 120737850 120750712 - MGP_C3HHeJ_P0056559 Ppp1r14d protein_coding protein_coding MGP_C3HHeJ_T0056619.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467182 121488853 + Mga protein_coding retained_intron MGP_C3HHeJ_T0056620.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467194 121534655 + MGP_C3HHeJ_P0056620 Mga protein_coding protein_coding MGP_C3HHeJ_T0056621.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467198 121497700 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056622.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121467255 121530527 + MGP_C3HHeJ_P0056622 Mga protein_coding protein_coding MGP_C3HHeJ_T0056623.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121492542 121495097 + Mga protein_coding retained_intron MGP_C3HHeJ_T0056624.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121510629 121516588 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056625.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121511133 121516381 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056626.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121528051 121535055 + Mga protein_coding processed_transcript MGP_C3HHeJ_T0056627.1 MGP_C3HHeJ_G0026074.1 mouse_genomes_project 2 121530137 121531955 + Mga protein_coding retained_intron MGP_C3HHeJ_T0059431.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185589008 185618713 + MGP_C3HHeJ_P0059431 Col20a1 protein_coding protein_coding MGP_C3HHeJ_T0059432.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185589008 185619925 + MGP_C3HHeJ_P0059432 Col20a1 protein_coding protein_coding MGP_C3HHeJ_T0059433.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185591542 185619930 + MGP_C3HHeJ_P0059433 Col20a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059434.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185602876 185605863 + MGP_C3HHeJ_P0059434 Col20a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059435.1 MGP_C3HHeJ_G0026724.1 mouse_genomes_project 2 185615645 185619925 + MGP_C3HHeJ_P0059435 Col20a1 protein_coding protein_coding MGP_C3HHeJ_T0059605.1 MGP_C3HHeJ_G0026751.1 mouse_genomes_project 2 186313120 186314770 - MGP_C3HHeJ_P0059605 Lkaaear1 protein_coding protein_coding MGP_C3HHeJ_T0059606.1 MGP_C3HHeJ_G0026751.1 mouse_genomes_project 2 186313123 186313744 - MGP_C3HHeJ_P0059606 Lkaaear1 protein_coding protein_coding MGP_C3HHeJ_T0098100.1 MGP_C3HHeJ_G0036312.1 mouse_genomes_project 2 27340580 27340715 + Gm24976 rRNA rRNA MGP_C3HHeJ_T0052117.1 MGP_C3HHeJ_G0025058.1 mouse_genomes_project 2 2897897 2898752 - Gm13199 protein_coding processed_transcript MGP_C3HHeJ_T0052118.1 MGP_C3HHeJ_G0025058.1 mouse_genomes_project 2 2897898 2898741 - MGP_C3HHeJ_P0052118 Gm13199 protein_coding protein_coding MGP_C3HHeJ_T0101173.1 MGP_C3HHeJ_G0039322.1 mouse_genomes_project 2 51525742 51526127 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0004018.1 MGP_C3HHeJ_G0003558.1 mouse_genomes_project 2 133905570 133976064 - Gm14280 antisense antisense MGP_C3HHeJ_T0056947.1 MGP_C3HHeJ_G0026129.1 mouse_genomes_project 2 124004583 124023178 - MGP_C3HHeJ_P0056947 Duox2 protein_coding protein_coding MGP_C3HHeJ_T0056948.1 MGP_C3HHeJ_G0026129.1 mouse_genomes_project 2 124008038 124010920 - Duox2 protein_coding processed_transcript MGP_C3HHeJ_T0056944.1 MGP_C3HHeJ_G0026127.1 mouse_genomes_project 2 123908204 123926818 + MGP_C3HHeJ_P0056944 Terb2 protein_coding protein_coding MGP_C3HHeJ_T0056945.1 MGP_C3HHeJ_G0026127.1 mouse_genomes_project 2 123908406 123925382 + Terb2 protein_coding processed_transcript MGP_C3HHeJ_T0058552.1 MGP_C3HHeJ_G0026503.1 mouse_genomes_project 2 161349125 161380351 + MGP_C3HHeJ_P0058552 Vstm2l protein_coding protein_coding MGP_C3HHeJ_T0007081.1 MGP_C3HHeJ_G0005803.1 mouse_genomes_project 2 25879452 25880935 - Gm13371 lincRNA lincRNA MGP_C3HHeJ_T0001012.1 MGP_C3HHeJ_G0000949.1 mouse_genomes_project 2 11368593 11372557 - TEC TEC MGP_C3HHeJ_T0100468.1 MGP_C3HHeJ_G0038662.1 mouse_genomes_project 2 95120437 95120568 + Gm24318 snoRNA snoRNA MGP_C3HHeJ_T0010328.1 MGP_C3HHeJ_G0008461.1 mouse_genomes_project 2 43536748 43536826 - Mir5129 miRNA miRNA MGP_C3HHeJ_T0017695.1 MGP_C3HHeJ_G0015254.1 mouse_genomes_project 2 171484571 171548526 + Gm11476 processed_transcript processed_transcript MGP_C3HHeJ_T0058877.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168600962 168620051 - MGP_C3HHeJ_P0058877 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058878.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168600962 168620129 - MGP_C3HHeJ_P0058878 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058879.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168600962 168619960 - MGP_C3HHeJ_P0058879 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058880.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168608550 168619214 - Pltp protein_coding retained_intron MGP_C3HHeJ_T0058881.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168614896 168620044 - Pltp protein_coding processed_transcript MGP_C3HHeJ_T0058882.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168615033 168620038 - MGP_C3HHeJ_P0058882 Pltp protein_coding protein_coding MGP_C3HHeJ_T0058883.1 MGP_C3HHeJ_G0026598.1 mouse_genomes_project 2 168616739 168620048 - MGP_C3HHeJ_P0058883 Pltp protein_coding protein_coding MGP_C3HHeJ_T0010363.1 MGP_C3HHeJ_G0008496.1 mouse_genomes_project 2 119725529 119725628 - Gm22800 miRNA miRNA MGP_C3HHeJ_T0053946.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31095595 31105078 - Slc2a8 protein_coding retained_intron MGP_C3HHeJ_T0053947.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31095595 31105092 - MGP_C3HHeJ_P0053947 Slc2a8 protein_coding protein_coding MGP_C3HHeJ_T0053948.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31096190 31105027 - MGP_C3HHeJ_P0053948 Slc2a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053949.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31096190 31105027 - MGP_C3HHeJ_P0053949 Slc2a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053950.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31096190 31105027 - MGP_C3HHeJ_P0053950 Slc2a8 protein_coding protein_coding MGP_C3HHeJ_T0053951.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31098532 31105081 - MGP_C3HHeJ_P0053951 Slc2a8 protein_coding protein_coding MGP_C3HHeJ_T0053952.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31099516 31105029 - Slc2a8 protein_coding retained_intron MGP_C3HHeJ_T0053953.1 MGP_C3HHeJ_G0025363.1 mouse_genomes_project 2 31104495 31105093 - Slc2a8 protein_coding processed_transcript MGP_C3HHeJ_T0013526.1 MGP_C3HHeJ_G0011630.1 mouse_genomes_project 2 95091403 95092004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058938.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169077144 169111258 - MGP_C3HHeJ_P0058938 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058939.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169078268 169087428 - MGP_C3HHeJ_P0058939 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058940.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169078268 169116911 - MGP_C3HHeJ_P0058940 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058941.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169078268 169116911 - MGP_C3HHeJ_P0058941 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058942.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169080225 169116911 - MGP_C3HHeJ_P0058942 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058943.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169080230 169107335 - MGP_C3HHeJ_P0058943 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058944.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169088729 169104738 - Elmo2 protein_coding processed_transcript MGP_C3HHeJ_T0058945.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169089118 169102179 - MGP_C3HHeJ_P0058945 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058946.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169095140 169102069 - Elmo2 protein_coding retained_intron MGP_C3HHeJ_T0058947.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169099339 169106783 - MGP_C3HHeJ_P0058947 Elmo2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058948.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169102106 169107007 - MGP_C3HHeJ_P0058948 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058949.1 MGP_C3HHeJ_G0026608.1 mouse_genomes_project 2 169106103 169116911 - MGP_C3HHeJ_P0058949 Elmo2 protein_coding protein_coding MGP_C3HHeJ_T0058197.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507194 158521347 + Dynlrb1 protein_coding processed_transcript MGP_C3HHeJ_T0058198.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507196 158521352 + MGP_C3HHeJ_P0058198 Dynlrb1 protein_coding protein_coding MGP_C3HHeJ_T0058199.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507269 158521210 + MGP_C3HHeJ_P0058199 Dynlrb1 protein_coding protein_coding MGP_C3HHeJ_T0058200.1 MGP_C3HHeJ_G0026448.1 mouse_genomes_project 2 158507472 158521155 + Dynlrb1 protein_coding processed_transcript MGP_C3HHeJ_T0097891.1 MGP_C3HHeJ_G0036103.1 mouse_genomes_project 2 11986039 11986661 - pseudogene pseudogene MGP_C3HHeJ_T0057058.1 MGP_C3HHeJ_G0026156.1 mouse_genomes_project 2 128016935 128018381 + Fgf7 protein_coding processed_transcript MGP_C3HHeJ_T0057059.1 MGP_C3HHeJ_G0026156.1 mouse_genomes_project 2 128016935 128084566 + MGP_C3HHeJ_P0057059 Fgf7 protein_coding protein_coding MGP_C3HHeJ_T0057060.1 MGP_C3HHeJ_G0026156.1 mouse_genomes_project 2 128017250 128083902 + MGP_C3HHeJ_P0057060 Fgf7 protein_coding protein_coding MGP_C3HHeJ_T0058177.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158105622 158135928 - MGP_C3HHeJ_P0058177 Eif2s2 protein_coding protein_coding MGP_C3HHeJ_T0058178.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158105630 158135775 - MGP_C3HHeJ_P0058178 Eif2s2 protein_coding protein_coding MGP_C3HHeJ_T0058179.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158127313 158135824 - Eif2s2 protein_coding retained_intron MGP_C3HHeJ_T0058180.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158127345 158135788 - MGP_C3HHeJ_P0058180 Eif2s2 protein_coding protein_coding MGP_C3HHeJ_T0058181.1 MGP_C3HHeJ_G0026445.1 mouse_genomes_project 2 158127348 158135801 - Eif2s2 protein_coding retained_intron MGP_C3HHeJ_T0007060.1 MGP_C3HHeJ_G0005788.1 mouse_genomes_project 2 10004935 10014368 + Gm37565 lincRNA lincRNA MGP_C3HHeJ_T0010251.1 MGP_C3HHeJ_G0008384.1 mouse_genomes_project 2 7689930 7690014 + Mir466m miRNA miRNA MGP_C3HHeJ_T0007147.1 MGP_C3HHeJ_G0005856.1 mouse_genomes_project 2 73637328 73638747 - A630050E04Rik lincRNA lincRNA MGP_C3HHeJ_T0013710.1 MGP_C3HHeJ_G0011814.1 mouse_genomes_project 2 168386523 168386779 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003973.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105868049 105881418 - Wt1os antisense antisense MGP_C3HHeJ_T0003974.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105868376 105916443 - Wt1os antisense antisense MGP_C3HHeJ_T0003975.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105869426 105869635 - Wt1os antisense antisense MGP_C3HHeJ_T0003976.1 MGP_C3HHeJ_G0003527.1 mouse_genomes_project 2 105885138 105916336 - Wt1os antisense antisense MGP_C3HHeJ_T0007097.1 MGP_C3HHeJ_G0005815.1 mouse_genomes_project 2 32274398 32288446 - Gm38389 lincRNA lincRNA MGP_C3HHeJ_T0058741.1 MGP_C3HHeJ_G0026547.1 mouse_genomes_project 2 167506121 167514280 + Wisp2 protein_coding processed_transcript MGP_C3HHeJ_T0058742.1 MGP_C3HHeJ_G0026547.1 mouse_genomes_project 2 167506149 167518452 + MGP_C3HHeJ_P0058742 Wisp2 protein_coding protein_coding MGP_C3HHeJ_T0058626.1 MGP_C3HHeJ_G0026520.1 mouse_genomes_project 2 163928193 163931562 - MGP_C3HHeJ_P0058626 Mafb protein_coding protein_coding MGP_C3HHeJ_T0099198.1 MGP_C3HHeJ_G0037392.1 mouse_genomes_project 2 75250471 75250570 - Gm24996 snRNA snRNA MGP_C3HHeJ_T0003857.1 MGP_C3HHeJ_G0003444.1 mouse_genomes_project 2 24388032 24393704 + Snhg7os antisense antisense MGP_C3HHeJ_T0003858.1 MGP_C3HHeJ_G0003444.1 mouse_genomes_project 2 24391074 24393704 + Snhg7os antisense antisense MGP_C3HHeJ_T0003859.1 MGP_C3HHeJ_G0003444.1 mouse_genomes_project 2 24391648 24393704 + Snhg7os antisense antisense MGP_C3HHeJ_T0013659.1 MGP_C3HHeJ_G0011763.1 mouse_genomes_project 2 150501610 150502049 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055574.1 MGP_C3HHeJ_G0025808.1 mouse_genomes_project 2 89276849 89277785 - MGP_C3HHeJ_P0055574 Olfr1221 protein_coding protein_coding MGP_C3HHeJ_T0013399.1 MGP_C3HHeJ_G0011503.1 mouse_genomes_project 2 51396696 51397113 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010370.1 MGP_C3HHeJ_G0008503.1 mouse_genomes_project 2 129980787 129980913 + Gm22411 miRNA miRNA MGP_C3HHeJ_T0058480.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160367019 160378959 - MGP_C3HHeJ_P0058480 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058481.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160367031 160379038 - MGP_C3HHeJ_P0058481 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058482.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160369478 160378914 - MGP_C3HHeJ_P0058482 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058483.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160373439 160375140 - Dsn1 protein_coding retained_intron MGP_C3HHeJ_T0058484.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160374519 160378185 - MGP_C3HHeJ_P0058484 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058485.1 MGP_C3HHeJ_G0026490.1 mouse_genomes_project 2 160377203 160378458 - MGP_C3HHeJ_P0058485 Dsn1 protein_coding protein_coding MGP_C3HHeJ_T0058246.1 MGP_C3HHeJ_G0026456.1 mouse_genomes_project 2 158898681 158921902 + MGP_C3HHeJ_P0058246 Myh7b protein_coding protein_coding MGP_C3HHeJ_T0058247.1 MGP_C3HHeJ_G0026456.1 mouse_genomes_project 2 158916617 158917976 + Myh7b protein_coding processed_transcript MGP_C3HHeJ_T0058248.1 MGP_C3HHeJ_G0026456.1 mouse_genomes_project 2 158921045 158921798 + Myh7b protein_coding retained_intron MGP_C3HHeJ_T0059187.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605005 176641258 + MGP_C3HHeJ_P0059187 Cass4 protein_coding protein_coding MGP_C3HHeJ_T0059188.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605032 176646817 + MGP_C3HHeJ_P0059188 Cass4 protein_coding protein_coding MGP_C3HHeJ_T0059189.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605111 176645920 + MGP_C3HHeJ_P0059189 Cass4 protein_coding protein_coding MGP_C3HHeJ_T0059190.1 MGP_C3HHeJ_G0026662.1 mouse_genomes_project 2 176605181 176645703 + MGP_C3HHeJ_P0059190 Cass4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053090.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24338868 24349983 - Agpat2 protein_coding processed_transcript MGP_C3HHeJ_T0053091.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24338868 24350104 - MGP_C3HHeJ_P0053091 Agpat2 protein_coding protein_coding MGP_C3HHeJ_T0053092.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24340314 24350189 - Agpat2 protein_coding processed_transcript MGP_C3HHeJ_T0053093.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24341929 24349488 - Agpat2 protein_coding processed_transcript MGP_C3HHeJ_T0053094.1 MGP_C3HHeJ_G0025227.1 mouse_genomes_project 2 24342252 24349698 - MGP_C3HHeJ_P0053094 Agpat2 protein_coding protein_coding MGP_C3HHeJ_T0056098.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104134592 104173190 + MGP_C3HHeJ_P0056098 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056099.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104134617 104167953 + Elf5 protein_coding retained_intron MGP_C3HHeJ_T0056100.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104146964 104173193 + MGP_C3HHeJ_P0056100 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056101.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104147028 104172051 + MGP_C3HHeJ_P0056101 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056102.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104147729 104171241 + MGP_C3HHeJ_P0056102 Elf5 protein_coding protein_coding MGP_C3HHeJ_T0056103.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104169542 104171225 + Elf5 protein_coding processed_transcript MGP_C3HHeJ_T0056104.1 MGP_C3HHeJ_G0025924.1 mouse_genomes_project 2 104170947 104172033 + Elf5 protein_coding processed_transcript MGP_C3HHeJ_T0000313.1 MGP_C3HHeJ_G0000263.1 mouse_genomes_project 2 20078912 20078982 - mt-Td Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0004005.1 MGP_C3HHeJ_G0003550.1 mouse_genomes_project 2 130865330 130867839 - Gm14011 antisense antisense MGP_C3HHeJ_T0007253.1 MGP_C3HHeJ_G0005941.1 mouse_genomes_project 2 138022207 138029059 + lincRNA lincRNA MGP_C3HHeJ_T0058657.1 MGP_C3HHeJ_G0026526.1 mouse_genomes_project 2 164482254 164488135 - MGP_C3HHeJ_P0058657 Emilin3 protein_coding protein_coding MGP_C3HHeJ_T0058658.1 MGP_C3HHeJ_G0026526.1 mouse_genomes_project 2 164482255 164488146 - MGP_C3HHeJ_P0058658 Emilin3 protein_coding protein_coding MGP_C3HHeJ_T0013407.1 MGP_C3HHeJ_G0011511.1 mouse_genomes_project 2 54841543 54843950 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013624.1 MGP_C3HHeJ_G0011728.1 mouse_genomes_project 2 135496542 135497152 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054618.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59573145 59649965 - MGP_C3HHeJ_P0054618 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054619.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59575025 59705392 - MGP_C3HHeJ_P0054619 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054620.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59579039 59705392 - MGP_C3HHeJ_P0054620 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054621.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59579933 59649980 - MGP_C3HHeJ_P0054621 Itgb6 protein_coding protein_coding MGP_C3HHeJ_T0054622.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59610844 59649947 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054623.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59629449 59650008 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054624.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59645501 59649957 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054625.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59650897 59686088 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0054626.1 MGP_C3HHeJ_G0025495.1 mouse_genomes_project 2 59673921 59686065 - Itgb6 protein_coding processed_transcript MGP_C3HHeJ_T0011410.1 MGP_C3HHeJ_G0009543.1 mouse_genomes_project 2 105911721 105911981 - Gm27715 misc_RNA misc_RNA MGP_C3HHeJ_T0055087.1 MGP_C3HHeJ_G0025584.1 mouse_genomes_project 2 74234484 74251419 + Hoxd4 protein_coding processed_transcript MGP_C3HHeJ_T0055088.1 MGP_C3HHeJ_G0025584.1 mouse_genomes_project 2 74244528 74251711 + MGP_C3HHeJ_P0055088 Hoxd4 protein_coding protein_coding MGP_C3HHeJ_T0055090.1 MGP_C3HHeJ_G0025584.1 mouse_genomes_project 2 74249624 74251674 + MGP_C3HHeJ_P0055090 Hoxd4 protein_coding protein_coding MGP_C3HHeJ_T0013626.1 MGP_C3HHeJ_G0011730.1 mouse_genomes_project 2 138802644 138803286 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056596.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304449 121313308 - MGP_C3HHeJ_P0056596 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056597.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304451 121311616 - Ltk protein_coding retained_intron MGP_C3HHeJ_T0056598.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304451 121313344 - MGP_C3HHeJ_P0056598 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056599.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304455 121313444 - MGP_C3HHeJ_P0056599 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056600.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304457 121311620 - MGP_C3HHeJ_P0056600 Ltk protein_coding protein_coding MGP_C3HHeJ_T0056601.1 MGP_C3HHeJ_G0026071.1 mouse_genomes_project 2 121304459 121311614 - Ltk protein_coding retained_intron MGP_C3HHeJ_T0099189.1 MGP_C3HHeJ_G0037383.1 mouse_genomes_project 2 37382361 37382468 + Gm26127 snRNA snRNA MGP_C3HHeJ_T0003923.1 MGP_C3HHeJ_G0003496.1 mouse_genomes_project 2 68554236 68581105 + Gm13613 antisense antisense MGP_C3HHeJ_T0058764.1 MGP_C3HHeJ_G0026556.1 mouse_genomes_project 2 167890196 167891574 - MGP_C3HHeJ_P0058764 Wfdc12 protein_coding protein_coding MGP_C3HHeJ_T0055944.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93659598 93794445 - MGP_C3HHeJ_P0055944 Tspan18 protein_coding protein_coding MGP_C3HHeJ_T0055945.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93662097 93689954 - MGP_C3HHeJ_P0055945 Tspan18 protein_coding protein_coding MGP_C3HHeJ_T0055946.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93771273 93794463 - Tspan18 protein_coding processed_transcript MGP_C3HHeJ_T0055947.1 MGP_C3HHeJ_G0025895.1 mouse_genomes_project 2 93771273 93772518 - Tspan18 protein_coding processed_transcript MGP_C3HHeJ_T0058766.1 MGP_C3HHeJ_G0026558.1 mouse_genomes_project 2 167911535 167919570 - MGP_C3HHeJ_P0058766 Wfdc15b protein_coding protein_coding MGP_C3HHeJ_T0058767.1 MGP_C3HHeJ_G0026558.1 mouse_genomes_project 2 167911535 167919541 - MGP_C3HHeJ_P0058767 Wfdc15b protein_coding protein_coding MGP_C3HHeJ_T0058768.1 MGP_C3HHeJ_G0026558.1 mouse_genomes_project 2 167911536 167912665 - MGP_C3HHeJ_P0058768 Wfdc15b protein_coding protein_coding MGP_C3HHeJ_T0055449.1 MGP_C3HHeJ_G0025699.1 mouse_genomes_project 2 86299879 86300821 - MGP_C3HHeJ_P0055449 protein_coding protein_coding MGP_C3HHeJ_T0057544.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135131145 135151260 + MGP_C3HHeJ_P0057544 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0057545.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135131155 135148616 + MGP_C3HHeJ_P0057545 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0057546.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135131167 135151260 + MGP_C3HHeJ_P0057546 Crls1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057547.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135132213 135150917 + MGP_C3HHeJ_P0057547 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0057548.1 MGP_C3HHeJ_G0026267.1 mouse_genomes_project 2 135132217 135150368 + MGP_C3HHeJ_P0057548 Crls1 protein_coding protein_coding MGP_C3HHeJ_T0017571.1 MGP_C3HHeJ_G0015195.1 mouse_genomes_project 2 77523718 77525433 - Gm13727 processed_transcript processed_transcript MGP_C3HHeJ_T0057734.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148539107 148577390 + MGP_C3HHeJ_P0057734 Rin2 protein_coding protein_coding MGP_C3HHeJ_T0057735.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148540351 148643698 + MGP_C3HHeJ_P0057735 Rin2 protein_coding protein_coding MGP_C3HHeJ_T0057736.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148540487 148643698 + MGP_C3HHeJ_P0057736 Rin2 protein_coding protein_coding MGP_C3HHeJ_T0057737.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148540533 148577792 + MGP_C3HHeJ_P0057737 Rin2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057738.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148577237 148599903 + Rin2 protein_coding processed_transcript MGP_C3HHeJ_T0057739.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148577376 148600172 + Rin2 protein_coding processed_transcript MGP_C3HHeJ_T0057740.1 MGP_C3HHeJ_G0026313.1 mouse_genomes_project 2 148618199 148635056 + Rin2 protein_coding processed_transcript MGP_C3HHeJ_T0058329.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159336402 159370501 - MGP_C3HHeJ_P0058329 Fer1l4 protein_coding protein_coding MGP_C3HHeJ_T0058330.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159336403 159342150 - Fer1l4 protein_coding retained_intron MGP_C3HHeJ_T0058331.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159336404 159354276 - Fer1l4 protein_coding retained_intron MGP_C3HHeJ_T0058332.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159346567 159348622 - MGP_C3HHeJ_P0058332 Fer1l4 protein_coding protein_coding MGP_C3HHeJ_T0058333.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159346716 159348624 - Fer1l4 protein_coding retained_intron MGP_C3HHeJ_T0058334.1 MGP_C3HHeJ_G0026471.1 mouse_genomes_project 2 159352650 159355011 - MGP_C3HHeJ_P0058334 Fer1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013584.1 MGP_C3HHeJ_G0011688.1 mouse_genomes_project 2 118649560 118650119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010377.1 MGP_C3HHeJ_G0008510.1 mouse_genomes_project 2 141301837 141301916 + Mir1952 miRNA miRNA MGP_C3HHeJ_T0055595.1 MGP_C3HHeJ_G0025825.1 mouse_genomes_project 2 89656161 89657335 - MGP_C3HHeJ_P0055595 Olfr1242 protein_coding protein_coding MGP_C3HHeJ_T0055596.1 MGP_C3HHeJ_G0025825.1 mouse_genomes_project 2 89656257 89662481 - MGP_C3HHeJ_P0055596 Olfr1242 protein_coding protein_coding MGP_C3HHeJ_T0055597.1 MGP_C3HHeJ_G0025825.1 mouse_genomes_project 2 89657008 89661972 - Olfr1242 protein_coding processed_transcript MGP_C3HHeJ_T0003946.1 MGP_C3HHeJ_G0003510.1 mouse_genomes_project 2 74107304 74112770 + 4930445N08Rik antisense antisense MGP_C3HHeJ_T0054864.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69227167 69241770 - MGP_C3HHeJ_P0054864 Mettl5 protein_coding protein_coding MGP_C3HHeJ_T0054865.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69227183 69241752 - MGP_C3HHeJ_P0054865 Mettl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054866.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69227187 69229800 - Mettl5 protein_coding retained_intron MGP_C3HHeJ_T0054867.1 MGP_C3HHeJ_G0025540.1 mouse_genomes_project 2 69233071 69241759 - Mettl5 protein_coding retained_intron MGP_C3HHeJ_T0055418.1 MGP_C3HHeJ_G0025669.1 mouse_genomes_project 2 85593662 85594592 - MGP_C3HHeJ_P0055418 Olfr1016 protein_coding protein_coding MGP_C3HHeJ_T0003899.1 MGP_C3HHeJ_G0003478.1 mouse_genomes_project 2 43628847 43631799 + Zeb2os antisense antisense MGP_C3HHeJ_T0003900.1 MGP_C3HHeJ_G0003478.1 mouse_genomes_project 2 43629977 43631799 + Zeb2os antisense antisense MGP_C3HHeJ_T0056946.1 MGP_C3HHeJ_G0026128.1 mouse_genomes_project 2 123959073 123990827 + MGP_C3HHeJ_P0056946 Sord protein_coding protein_coding MGP_C3HHeJ_T0013475.1 MGP_C3HHeJ_G0011579.1 mouse_genomes_project 2 79050785 79051316 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055414.1 MGP_C3HHeJ_G0025665.1 mouse_genomes_project 2 85513088 85514033 + MGP_C3HHeJ_P0055414 Olfr1009 protein_coding protein_coding MGP_C3HHeJ_T0056595.1 MGP_C3HHeJ_G0026070.1 mouse_genomes_project 2 121295451 121304393 + MGP_C3HHeJ_P0056595 Itpka protein_coding protein_coding MGP_C3HHeJ_T0013289.1 MGP_C3HHeJ_G0011393.1 mouse_genomes_project 2 12538216 12539300 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004091.1 MGP_C3HHeJ_G0003612.1 mouse_genomes_project 2 168678033 168686906 + Zfp335os antisense antisense MGP_C3HHeJ_T0004092.1 MGP_C3HHeJ_G0003612.1 mouse_genomes_project 2 168680724 168686516 + Zfp335os antisense antisense MGP_C3HHeJ_T0058460.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160184214 160203637 + MGP_C3HHeJ_P0058460 Tgif2 protein_coding protein_coding MGP_C3HHeJ_T0058461.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160185227 160196704 + MGP_C3HHeJ_P0058461 Tgif2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058462.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160198985 160202233 + Tgif2 protein_coding processed_transcript MGP_C3HHeJ_T0058463.1 MGP_C3HHeJ_G0026486.1 mouse_genomes_project 2 160199865 160202587 + Tgif2 protein_coding processed_transcript MGP_C3HHeJ_T0056453.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868200 119907715 + MGP_C3HHeJ_P0056453 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056454.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868218 119958296 + MGP_C3HHeJ_P0056454 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056455.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868429 119958288 + MGP_C3HHeJ_P0056455 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056456.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868694 119958286 + MGP_C3HHeJ_P0056456 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056457.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119868694 119958285 + MGP_C3HHeJ_P0056457 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056458.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119918399 119933318 + MGP_C3HHeJ_P0056458 Eif2ak4 protein_coding protein_coding MGP_C3HHeJ_T0056459.1 MGP_C3HHeJ_G0026034.1 mouse_genomes_project 2 119938146 119943810 + Eif2ak4 protein_coding processed_transcript MGP_C3HHeJ_T0058681.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584773 166617394 + L3mbtl1 protein_coding retained_intron MGP_C3HHeJ_T0058682.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584775 166619835 + MGP_C3HHeJ_P0058682 L3mbtl1 protein_coding protein_coding MGP_C3HHeJ_T0058683.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584776 166591312 + L3mbtl1 protein_coding processed_transcript MGP_C3HHeJ_T0058684.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584776 166591384 + MGP_C3HHeJ_P0058684 L3mbtl1 protein_coding protein_coding MGP_C3HHeJ_T0058685.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166584801 166589670 + L3mbtl1 protein_coding processed_transcript MGP_C3HHeJ_T0058686.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166590429 166591975 + L3mbtl1 protein_coding processed_transcript MGP_C3HHeJ_T0058687.1 MGP_C3HHeJ_G0026531.1 mouse_genomes_project 2 166590429 166591975 + MGP_C3HHeJ_P0058687 L3mbtl1 protein_coding protein_coding MGP_C3HHeJ_T0052236.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8842037 8860695 - MGP_C3HHeJ_P0052236 Rbm17 protein_coding protein_coding MGP_C3HHeJ_T0052237.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8842039 8842591 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052238.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8842041 8843769 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052239.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8843991 8845582 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052240.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8845515 8847459 - Rbm17 protein_coding retained_intron MGP_C3HHeJ_T0052241.1 MGP_C3HHeJ_G0025077.1 mouse_genomes_project 2 8854114 8861618 - MGP_C3HHeJ_P0052241 Rbm17 protein_coding protein_coding MGP_C3HHeJ_T0013716.1 MGP_C3HHeJ_G0011820.1 mouse_genomes_project 2 170995228 170995784 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054164.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34509927 34531555 + MGP_C3HHeJ_P0054164 Ptgs1 protein_coding protein_coding MGP_C3HHeJ_T0054165.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34510057 34517344 + Ptgs1 protein_coding processed_transcript MGP_C3HHeJ_T0054166.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34515529 34531552 + Ptgs1 protein_coding processed_transcript MGP_C3HHeJ_T0054167.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34519993 34520749 + Ptgs1 protein_coding retained_intron MGP_C3HHeJ_T0054168.1 MGP_C3HHeJ_G0025397.1 mouse_genomes_project 2 34521755 34524486 + Ptgs1 protein_coding retained_intron MGP_C3HHeJ_T0004015.1 MGP_C3HHeJ_G0003555.1 mouse_genomes_project 2 131703426 131704448 - Gm14041 antisense antisense MGP_C3HHeJ_T0013388.1 MGP_C3HHeJ_G0011492.1 mouse_genomes_project 2 49215712 49215891 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010274.1 MGP_C3HHeJ_G0008407.1 mouse_genomes_project 2 7713621 7713717 + Mir466d miRNA miRNA MGP_C3HHeJ_T0056694.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122058609 122110713 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056695.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122058609 122110573 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056696.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122066441 122110713 + MGP_C3HHeJ_P0056696 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056697.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122066441 122110713 + MGP_C3HHeJ_P0056697 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056698.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122066735 122110299 + MGP_C3HHeJ_P0056698 Capn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0056699.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081642 122110713 + MGP_C3HHeJ_P0056699 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056700.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081644 122110713 + MGP_C3HHeJ_P0056700 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056701.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081694 122110713 + MGP_C3HHeJ_P0056701 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056702.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081700 122110314 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056703.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122081700 122110713 + MGP_C3HHeJ_P0056703 Capn3 protein_coding protein_coding MGP_C3HHeJ_T0056704.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122090510 122090785 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056705.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122106048 122109017 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056706.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122107032 122108842 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0056707.1 MGP_C3HHeJ_G0026087.1 mouse_genomes_project 2 122107106 122109195 + Capn3 protein_coding processed_transcript MGP_C3HHeJ_T0055430.1 MGP_C3HHeJ_G0025680.1 mouse_genomes_project 2 85870649 85871334 + MGP_C3HHeJ_P0055430 protein_coding protein_coding MGP_C3HHeJ_T0056049.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571851 102582561 + Commd9 protein_coding processed_transcript MGP_C3HHeJ_T0056050.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571857 102587267 + MGP_C3HHeJ_P0056050 Commd9 protein_coding protein_coding MGP_C3HHeJ_T0056051.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571864 102582827 + Commd9 protein_coding retained_intron MGP_C3HHeJ_T0056052.1 MGP_C3HHeJ_G0025914.1 mouse_genomes_project 2 102571867 102581020 + Commd9 protein_coding retained_intron MGP_C3HHeJ_T0058922.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169066247 - Slc35c2 protein_coding retained_intron MGP_C3HHeJ_T0058923.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076869 - MGP_C3HHeJ_P0058923 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058924.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076941 - MGP_C3HHeJ_P0058924 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058925.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076869 - MGP_C3HHeJ_P0058925 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058926.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076983 - MGP_C3HHeJ_P0058926 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058927.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169064959 169076938 - MGP_C3HHeJ_P0058927 Slc35c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058928.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169065857 169071337 - Slc35c2 protein_coding retained_intron MGP_C3HHeJ_T0058929.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169066759 169072482 - MGP_C3HHeJ_P0058929 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058930.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169066795 169072714 - MGP_C3HHeJ_P0058930 Slc35c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058931.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069022 169072714 - MGP_C3HHeJ_P0058931 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058932.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069191 169076950 - MGP_C3HHeJ_P0058932 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058933.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069191 169076949 - MGP_C3HHeJ_P0058933 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058934.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069279 169075666 - MGP_C3HHeJ_P0058934 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058935.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069284 169076941 - MGP_C3HHeJ_P0058935 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0058936.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169069954 169076952 - Slc35c2 protein_coding retained_intron MGP_C3HHeJ_T0058937.1 MGP_C3HHeJ_G0026607.1 mouse_genomes_project 2 169071992 169076886 - MGP_C3HHeJ_P0058937 Slc35c2 protein_coding protein_coding MGP_C3HHeJ_T0055436.1 MGP_C3HHeJ_G0025686.1 mouse_genomes_project 2 86013020 86013965 - MGP_C3HHeJ_P0055436 Olfr1044 protein_coding protein_coding MGP_C3HHeJ_T0058721.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289527 167310343 + MGP_C3HHeJ_P0058721 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058722.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289535 167307831 + MGP_C3HHeJ_P0058722 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058723.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289562 167304184 + Ttpal protein_coding retained_intron MGP_C3HHeJ_T0058724.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289562 167297998 + MGP_C3HHeJ_P0058724 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058725.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289564 167310344 + MGP_C3HHeJ_P0058725 Ttpal protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058726.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167289776 167303228 + MGP_C3HHeJ_P0058726 Ttpal protein_coding protein_coding MGP_C3HHeJ_T0058727.1 MGP_C3HHeJ_G0026543.1 mouse_genomes_project 2 167302850 167306757 + Ttpal protein_coding retained_intron MGP_C3HHeJ_T0055475.1 MGP_C3HHeJ_G0025723.1 mouse_genomes_project 2 87090870 87091809 - MGP_C3HHeJ_P0055475 Olfr1109 protein_coding protein_coding MGP_C3HHeJ_T0003924.1 MGP_C3HHeJ_G0003497.1 mouse_genomes_project 2 69241883 69244879 + Mettl5os antisense antisense MGP_C3HHeJ_T0052877.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23183624 23188843 + MGP_C3HHeJ_P0052877 Fbxw5 protein_coding protein_coding MGP_C3HHeJ_T0052878.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184187 23186922 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052879.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184189 23187185 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052880.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184230 23186558 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052881.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23184250 23186976 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052882.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23185929 23186956 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052883.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23186409 23187172 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0052884.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23186597 23188206 + MGP_C3HHeJ_P0052884 Fbxw5 protein_coding protein_coding MGP_C3HHeJ_T0052885.1 MGP_C3HHeJ_G0025186.1 mouse_genomes_project 2 23187278 23188317 + Fbxw5 protein_coding processed_transcript MGP_C3HHeJ_T0053939.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31082843 31085781 + MGP_C3HHeJ_P0053939 Rpl12 protein_coding protein_coding MGP_C3HHeJ_T0053940.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083004 31086630 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053941.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083013 31085330 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053942.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083016 31084223 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053943.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083024 31084596 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0053944.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083024 31085328 + MGP_C3HHeJ_P0053944 Rpl12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053945.1 MGP_C3HHeJ_G0025362.1 mouse_genomes_project 2 31083550 31084351 + Rpl12 protein_coding retained_intron MGP_C3HHeJ_T0001055.1 MGP_C3HHeJ_G0000992.1 mouse_genomes_project 2 69896377 69897098 - TEC TEC MGP_C3HHeJ_T0056522.1 MGP_C3HHeJ_G0026049.1 mouse_genomes_project 2 120546328 120551304 + MGP_C3HHeJ_P0056522 Rpusd2 protein_coding protein_coding MGP_C3HHeJ_T0055471.1 MGP_C3HHeJ_G0025719.1 mouse_genomes_project 2 87004793 87005726 - MGP_C3HHeJ_P0055471 Olfr1104 protein_coding protein_coding MGP_C3HHeJ_T0100460.1 MGP_C3HHeJ_G0038654.1 mouse_genomes_project 2 61838894 61839030 - Gm22020 snoRNA snoRNA MGP_C3HHeJ_T0013293.1 MGP_C3HHeJ_G0011397.1 mouse_genomes_project 2 12898864 12899294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011395.1 MGP_C3HHeJ_G0009528.1 mouse_genomes_project 2 21392774 21392949 + Gm26323 misc_RNA misc_RNA MGP_C3HHeJ_T0052318.1 MGP_C3HHeJ_G0025086.1 mouse_genomes_project 2 10321925 10330259 - MGP_C3HHeJ_P0052318 C1ql3 protein_coding protein_coding MGP_C3HHeJ_T0013610.1 MGP_C3HHeJ_G0011714.1 mouse_genomes_project 2 133196333 133196969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054919.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70442712 70469717 + MGP_C3HHeJ_P0054919 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054920.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443128 70479808 + MGP_C3HHeJ_P0054920 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054921.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443142 70461168 + MGP_C3HHeJ_P0054921 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054922.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443165 70483090 + MGP_C3HHeJ_P0054922 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054923.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443168 70466461 + MGP_C3HHeJ_P0054923 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054924.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443230 70473351 + MGP_C3HHeJ_P0054924 Dcaf17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054925.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70443236 70471743 + MGP_C3HHeJ_P0054925 Dcaf17 protein_coding protein_coding MGP_C3HHeJ_T0054926.1 MGP_C3HHeJ_G0025550.1 mouse_genomes_project 2 70458322 70465054 + Dcaf17 protein_coding processed_transcript MGP_C3HHeJ_T0052182.1 MGP_C3HHeJ_G0025068.1 mouse_genomes_project 2 7068263 7074763 - 9230102O04Rik protein_coding processed_transcript MGP_C3HHeJ_T0052183.1 MGP_C3HHeJ_G0025068.1 mouse_genomes_project 2 7068264 7069216 - MGP_C3HHeJ_P0052183 9230102O04Rik protein_coding protein_coding MGP_C3HHeJ_T0017669.1 MGP_C3HHeJ_G0015244.1 mouse_genomes_project 2 160042742 160049095 - 4930405A21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017670.1 MGP_C3HHeJ_G0015244.1 mouse_genomes_project 2 160044154 160049012 - 4930405A21Rik processed_transcript retained_intron MGP_C3HHeJ_T0003889.1 MGP_C3HHeJ_G0003469.1 mouse_genomes_project 2 33216742 33236172 + Gm13449 antisense antisense MGP_C3HHeJ_T0054516.1 MGP_C3HHeJ_G0025478.1 mouse_genomes_project 2 56981828 56990585 - MGP_C3HHeJ_P0054516 Ermn protein_coding protein_coding MGP_C3HHeJ_T0057292.1 MGP_C3HHeJ_G0026215.1 mouse_genomes_project 2 132359622 132438110 + MGP_C3HHeJ_P0057292 Tmc2 protein_coding protein_coding MGP_C3HHeJ_T0057293.1 MGP_C3HHeJ_G0026215.1 mouse_genomes_project 2 132362077 132437882 + MGP_C3HHeJ_P0057293 Tmc2 protein_coding protein_coding MGP_C3HHeJ_T0013392.1 MGP_C3HHeJ_G0011496.1 mouse_genomes_project 2 49929436 49930260 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057354.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132840781 132841524 - Ddrgk1 protein_coding retained_intron MGP_C3HHeJ_T0057355.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132840902 132851324 - MGP_C3HHeJ_P0057355 Ddrgk1 protein_coding protein_coding MGP_C3HHeJ_T0057356.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132840941 132844084 - Ddrgk1 protein_coding processed_transcript MGP_C3HHeJ_T0057357.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132841037 132848469 - MGP_C3HHeJ_P0057357 Ddrgk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057358.1 MGP_C3HHeJ_G0026232.1 mouse_genomes_project 2 132841945 132850547 - Ddrgk1 protein_coding processed_transcript MGP_C3HHeJ_T0099194.1 MGP_C3HHeJ_G0037388.1 mouse_genomes_project 2 62489270 62489377 - Gm23503 snRNA snRNA MGP_C3HHeJ_T0056192.1 MGP_C3HHeJ_G0025944.1 mouse_genomes_project 2 105609189 105628144 - MGP_C3HHeJ_P0056192 Prrg4 protein_coding protein_coding MGP_C3HHeJ_T0056193.1 MGP_C3HHeJ_G0025944.1 mouse_genomes_project 2 105617613 105627761 - MGP_C3HHeJ_P0056193 Prrg4 protein_coding protein_coding MGP_C3HHeJ_T0055527.1 MGP_C3HHeJ_G0025765.1 mouse_genomes_project 2 88088432 88089890 + MGP_C3HHeJ_P0055527 Olfr1158 protein_coding protein_coding MGP_C3HHeJ_T0003939.1 MGP_C3HHeJ_G0003505.1 mouse_genomes_project 2 72881239 72889628 + Gm13709 antisense antisense MGP_C3HHeJ_T0052202.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7592563 7662224 + MGP_C3HHeJ_P0052202 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052203.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7592564 7662224 + MGP_C3HHeJ_P0052203 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052204.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7592571 7627320 + Sfmbt2 protein_coding processed_transcript MGP_C3HHeJ_T0052205.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595185 7662224 + MGP_C3HHeJ_P0052205 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052206.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595185 7802335 + MGP_C3HHeJ_P0052206 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0052207.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595197 7616024 + Sfmbt2 protein_coding processed_transcript MGP_C3HHeJ_T0052208.1 MGP_C3HHeJ_G0025074.1 mouse_genomes_project 2 7595199 7802347 + MGP_C3HHeJ_P0052208 Sfmbt2 protein_coding protein_coding MGP_C3HHeJ_T0013564.1 MGP_C3HHeJ_G0011668.1 mouse_genomes_project 2 109502800 109503731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101890.1 MGP_C3HHeJ_G0039855.1 mouse_genomes_project 2 85397819 85398749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010305.1 MGP_C3HHeJ_G0008438.1 mouse_genomes_project 2 27356635 27356715 - Mir133c miRNA miRNA MGP_C3HHeJ_T0055560.1 MGP_C3HHeJ_G0025796.1 mouse_genomes_project 2 89042327 89043254 - MGP_C3HHeJ_P0055560 Olfr1208 protein_coding protein_coding MGP_C3HHeJ_T0013609.1 MGP_C3HHeJ_G0011713.1 mouse_genomes_project 2 133082485 133084076 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013447.1 MGP_C3HHeJ_G0011551.1 mouse_genomes_project 2 69995189 69995438 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055079.1 MGP_C3HHeJ_G0025579.1 mouse_genomes_project 2 74201918 74209385 + Hoxd11 protein_coding processed_transcript MGP_C3HHeJ_T0055080.1 MGP_C3HHeJ_G0025579.1 mouse_genomes_project 2 74204689 74206530 + MGP_C3HHeJ_P0055080 Hoxd11 protein_coding protein_coding MGP_C3HHeJ_T0007122.1 MGP_C3HHeJ_G0005835.1 mouse_genomes_project 2 51657284 51661086 - Gm26603 lincRNA lincRNA MGP_C3HHeJ_T0055507.1 MGP_C3HHeJ_G0025747.1 mouse_genomes_project 2 87747985 87750433 - MGP_C3HHeJ_P0055507 protein_coding protein_coding MGP_C3HHeJ_T0055166.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76619399 76786397 - MGP_C3HHeJ_P0055166 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055167.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76619492 76786379 - MGP_C3HHeJ_P0055167 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055168.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76621044 76629415 - MGP_C3HHeJ_P0055168 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055169.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76624548 76632194 - Ccdc141 protein_coding processed_transcript MGP_C3HHeJ_T0055170.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76632884 76640148 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055171.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76640145 76656101 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055172.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76640145 76656751 - MGP_C3HHeJ_P0055172 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0055173.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76656991 76786398 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055174.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76688227 76786372 - Ccdc141 protein_coding retained_intron MGP_C3HHeJ_T0055175.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76747615 76786362 - MGP_C3HHeJ_P0055175 Ccdc141 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055176.1 MGP_C3HHeJ_G0025603.1 mouse_genomes_project 2 76777742 76786338 - MGP_C3HHeJ_P0055176 Ccdc141 protein_coding protein_coding MGP_C3HHeJ_T0101391.1 MGP_C3HHeJ_G0039441.1 mouse_genomes_project 2 86847928 86848876 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013495.1 MGP_C3HHeJ_G0011599.1 mouse_genomes_project 2 85607817 85608013 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013320.1 MGP_C3HHeJ_G0011424.1 mouse_genomes_project 2 21258402 21259306 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004065.1 MGP_C3HHeJ_G0003593.1 mouse_genomes_project 2 158881041 158881952 - Gm14257 antisense antisense MGP_C3HHeJ_T0004002.1 MGP_C3HHeJ_G0003547.1 mouse_genomes_project 2 127230782 127233412 + A530010F05Rik antisense antisense MGP_C3HHeJ_T0001018.1 MGP_C3HHeJ_G0000955.1 mouse_genomes_project 2 12091685 12094359 + TEC TEC MGP_C3HHeJ_T0010408.1 MGP_C3HHeJ_G0008541.1 mouse_genomes_project 2 184941805 184941882 + Mir1a-1 miRNA miRNA MGP_C3HHeJ_T0053921.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 30993937 31046319 + MGP_C3HHeJ_P0053921 Fam129b protein_coding protein_coding MGP_C3HHeJ_T0053922.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31014366 31028671 + MGP_C3HHeJ_P0053922 Fam129b protein_coding protein_coding MGP_C3HHeJ_T0053923.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31029620 31031300 + Fam129b protein_coding retained_intron MGP_C3HHeJ_T0053924.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31034305 31040619 + Fam129b protein_coding processed_transcript MGP_C3HHeJ_T0053925.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31038235 31041702 + Fam129b protein_coding processed_transcript MGP_C3HHeJ_T0053926.1 MGP_C3HHeJ_G0025360.1 mouse_genomes_project 2 31041236 31043234 + Fam129b protein_coding processed_transcript MGP_C3HHeJ_T0003874.1 MGP_C3HHeJ_G0003457.1 mouse_genomes_project 2 29702665 29715511 - Gm13427 antisense antisense MGP_C3HHeJ_T0007254.1 MGP_C3HHeJ_G0005942.1 mouse_genomes_project 2 138062346 138071204 - Gm14211 lincRNA lincRNA MGP_C3HHeJ_T0053364.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27778313 27780505 + MGP_C3HHeJ_P0053364 Cercam protein_coding protein_coding MGP_C3HHeJ_T0053365.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27778643 27796071 + MGP_C3HHeJ_P0053365 Cercam protein_coding protein_coding MGP_C3HHeJ_T0053366.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27778693 27780459 + MGP_C3HHeJ_P0053366 Cercam protein_coding protein_coding MGP_C3HHeJ_T0053367.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27784752 27788699 + Cercam protein_coding retained_intron MGP_C3HHeJ_T0053368.1 MGP_C3HHeJ_G0025281.1 mouse_genomes_project 2 27785299 27793237 + Cercam protein_coding retained_intron MGP_C3HHeJ_T0057086.1 MGP_C3HHeJ_G0026162.1 mouse_genomes_project 2 128744505 128796336 + Usp8 protein_coding processed_transcript MGP_C3HHeJ_T0057087.1 MGP_C3HHeJ_G0026162.1 mouse_genomes_project 2 128744520 128796385 + MGP_C3HHeJ_P0057087 Usp8 protein_coding protein_coding MGP_C3HHeJ_T0057088.1 MGP_C3HHeJ_G0026162.1 mouse_genomes_project 2 128744537 128796378 + MGP_C3HHeJ_P0057088 Usp8 protein_coding protein_coding MGP_C3HHeJ_T0052915.1 MGP_C3HHeJ_G0025193.1 mouse_genomes_project 2 23298790 23307447 - MGP_C3HHeJ_P0052915 Ccdc183 protein_coding protein_coding MGP_C3HHeJ_T0052916.1 MGP_C3HHeJ_G0025193.1 mouse_genomes_project 2 23298848 23307428 - Ccdc183 protein_coding processed_transcript MGP_C3HHeJ_T0100500.1 MGP_C3HHeJ_G0038694.1 mouse_genomes_project 2 154301635 154301855 + Gm24199 snoRNA snoRNA MGP_C3HHeJ_T0010357.1 MGP_C3HHeJ_G0008490.1 mouse_genomes_project 2 105184935 105185015 - Mir1902 miRNA miRNA MGP_C3HHeJ_T0004102.1 MGP_C3HHeJ_G0003622.1 mouse_genomes_project 2 174612954 174626189 - Gm16796 antisense antisense MGP_C3HHeJ_T0007121.1 MGP_C3HHeJ_G0005834.1 mouse_genomes_project 2 50375969 50456048 - Gm13490 lincRNA lincRNA MGP_C3HHeJ_T0057854.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153744672 153790243 + MGP_C3HHeJ_P0057854 Pygb protein_coding protein_coding MGP_C3HHeJ_T0057855.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153746941 153771941 + Pygb protein_coding processed_transcript MGP_C3HHeJ_T0057856.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153773261 153775700 + Pygb protein_coding retained_intron MGP_C3HHeJ_T0057857.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153782091 153786958 + Pygb protein_coding retained_intron MGP_C3HHeJ_T0057858.1 MGP_C3HHeJ_G0026351.1 mouse_genomes_project 2 153786872 153789119 + Pygb protein_coding retained_intron MGP_C3HHeJ_T0099174.1 MGP_C3HHeJ_G0037368.1 mouse_genomes_project 2 4436520 4436617 + Gm24340 snRNA snRNA MGP_C3HHeJ_T0052656.1 MGP_C3HHeJ_G0025148.1 mouse_genomes_project 2 22581784 22595076 + MGP_C3HHeJ_P0052656 Zmynd19 protein_coding protein_coding MGP_C3HHeJ_T0001059.1 MGP_C3HHeJ_G0000996.1 mouse_genomes_project 2 104085234 104088639 - TEC TEC MGP_C3HHeJ_T0013266.1 MGP_C3HHeJ_G0011370.1 mouse_genomes_project 2 1028341 1029638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057232.1 MGP_C3HHeJ_G0026196.1 mouse_genomes_project 2 130980979 131016134 + MGP_C3HHeJ_P0057232 Fbln7 protein_coding protein_coding MGP_C3HHeJ_T0057233.1 MGP_C3HHeJ_G0026196.1 mouse_genomes_project 2 130981941 131016130 + MGP_C3HHeJ_P0057233 Fbln7 protein_coding protein_coding MGP_C3HHeJ_T0013562.1 MGP_C3HHeJ_G0011666.1 mouse_genomes_project 2 107881511 107882521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0058190.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388905 158394636 + Itch protein_coding retained_intron MGP_C3HHeJ_T0058191.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388905 158435853 + Itch protein_coding retained_intron MGP_C3HHeJ_T0058192.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388905 158493674 + MGP_C3HHeJ_P0058192 Itch protein_coding protein_coding MGP_C3HHeJ_T0058193.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388920 158438698 + Itch protein_coding retained_intron MGP_C3HHeJ_T0058194.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388927 158464273 + Itch protein_coding processed_transcript MGP_C3HHeJ_T0058195.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388955 158493672 + MGP_C3HHeJ_P0058195 Itch protein_coding protein_coding MGP_C3HHeJ_T0058196.1 MGP_C3HHeJ_G0026447.1 mouse_genomes_project 2 158388957 158478537 + Itch protein_coding retained_intron MGP_C3HHeJ_T0055015.1 MGP_C3HHeJ_G0025567.1 mouse_genomes_project 2 72796416 72822919 - MGP_C3HHeJ_P0055015 protein_coding unknown_likely_coding MGP_C3HHeJ_T0055016.1 MGP_C3HHeJ_G0025567.1 mouse_genomes_project 2 72816326 72822997 - protein_coding processed_transcript MGP_C3HHeJ_T0058013.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053710 156101435 + MGP_C3HHeJ_P0058013 Ttll9 protein_coding protein_coding MGP_C3HHeJ_T0058014.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053731 156097328 + MGP_C3HHeJ_P0058014 Ttll9 protein_coding protein_coding MGP_C3HHeJ_T0058015.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053731 156097277 + MGP_C3HHeJ_P0058015 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058016.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053731 156097284 + MGP_C3HHeJ_P0058016 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058017.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156053736 156101066 + MGP_C3HHeJ_P0058017 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058018.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156063728 156101435 + MGP_C3HHeJ_P0058018 Ttll9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058019.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156065006 156075752 + MGP_C3HHeJ_P0058019 Ttll9 protein_coding protein_coding MGP_C3HHeJ_T0058020.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156080889 156092059 + Ttll9 protein_coding retained_intron MGP_C3HHeJ_T0058021.1 MGP_C3HHeJ_G0026401.1 mouse_genomes_project 2 156096886 156102652 + Ttll9 protein_coding retained_intron MGP_C3HHeJ_T0055517.1 MGP_C3HHeJ_G0025755.1 mouse_genomes_project 2 87901652 87902597 + MGP_C3HHeJ_P0055517 Olfr1143 protein_coding protein_coding MGP_C3HHeJ_T0007153.1 MGP_C3HHeJ_G0005861.1 mouse_genomes_project 2 74274964 74277049 - Haglr lincRNA lincRNA MGP_C3HHeJ_T0007154.1 MGP_C3HHeJ_G0005861.1 mouse_genomes_project 2 74276975 74288479 - Haglr lincRNA lincRNA MGP_C3HHeJ_T0003913.1 MGP_C3HHeJ_G0003487.1 mouse_genomes_project 2 64367145 64368065 + Gm13594 antisense antisense MGP_C3HHeJ_T0010384.1 MGP_C3HHeJ_G0008517.1 mouse_genomes_project 2 158626711 158626820 + Mir695 miRNA miRNA MGP_C3HHeJ_T0057802.1 MGP_C3HHeJ_G0026329.1 mouse_genomes_project 2 151547151 151559074 + MGP_C3HHeJ_P0057802 Gzf1 protein_coding protein_coding MGP_C3HHeJ_T0057803.1 MGP_C3HHeJ_G0026329.1 mouse_genomes_project 2 151547339 151550178 + MGP_C3HHeJ_P0057803 Gzf1 protein_coding protein_coding MGP_C3HHeJ_T0057804.1 MGP_C3HHeJ_G0026329.1 mouse_genomes_project 2 151550740 151556340 + Gzf1 protein_coding processed_transcript MGP_C3HHeJ_T0059181.1 MGP_C3HHeJ_G0026659.1 mouse_genomes_project 2 176555313 176566260 + MGP_C3HHeJ_P0059181 Fam210b protein_coding protein_coding MGP_C3HHeJ_T0056780.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122647665 122667089 - MGP_C3HHeJ_P0056780 Epb42 protein_coding protein_coding MGP_C3HHeJ_T0056781.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122647993 122657270 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0056782.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122647993 122652585 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0056783.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122649178 122651795 - Epb42 protein_coding retained_intron MGP_C3HHeJ_T0056784.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122653427 122666852 - MGP_C3HHeJ_P0056784 Epb42 protein_coding protein_coding MGP_C3HHeJ_T0056785.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122657716 122666698 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0056786.1 MGP_C3HHeJ_G0026098.1 mouse_genomes_project 2 122663419 122666762 - Epb42 protein_coding processed_transcript MGP_C3HHeJ_T0055936.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645415 93656771 + MGP_C3HHeJ_P0055936 Trp53i11 protein_coding protein_coding MGP_C3HHeJ_T0055937.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645415 93659598 + MGP_C3HHeJ_P0055937 Trp53i11 protein_coding protein_coding MGP_C3HHeJ_T0055938.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645428 93657301 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055939.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645428 93658155 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055940.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645451 93659588 + MGP_C3HHeJ_P0055940 Trp53i11 protein_coding protein_coding MGP_C3HHeJ_T0055941.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93645537 93647430 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055942.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93647058 93659596 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0055943.1 MGP_C3HHeJ_G0025894.1 mouse_genomes_project 2 93656770 93658437 + Trp53i11 protein_coding processed_transcript MGP_C3HHeJ_T0010380.1 MGP_C3HHeJ_G0008513.1 mouse_genomes_project 2 150898889 150898968 + Gm27420 miRNA miRNA MGP_C3HHeJ_T0059535.1 MGP_C3HHeJ_G0026741.1 mouse_genomes_project 2 186104783 186106558 + MGP_C3HHeJ_P0059535 Abhd16b protein_coding protein_coding MGP_C3HHeJ_T0057158.1 MGP_C3HHeJ_G0026178.1 mouse_genomes_project 2 129509385 129520281 + MGP_C3HHeJ_P0057158 Gpat2 protein_coding protein_coding MGP_C3HHeJ_T0059485.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926263 185963714 + MGP_C3HHeJ_P0059485 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059486.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926277 185954556 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059487.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926286 185963676 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059488.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926286 185963714 + MGP_C3HHeJ_P0059488 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059489.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926309 185963714 + MGP_C3HHeJ_P0059489 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059490.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926309 185963714 + MGP_C3HHeJ_P0059490 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059491.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926309 185963676 + MGP_C3HHeJ_P0059491 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059492.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185926487 185930219 + MGP_C3HHeJ_P0059492 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059493.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185935141 185963714 + MGP_C3HHeJ_P0059493 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059494.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185943451 185954146 + MGP_C3HHeJ_P0059494 Rtel1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059495.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185946638 185954129 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059496.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185956552 185957053 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059497.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185957115 185959161 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059498.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185957225 185958253 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059499.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185959179 185962650 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059500.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185961497 185962911 + Rtel1 protein_coding processed_transcript MGP_C3HHeJ_T0059501.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185962300 185963115 + Rtel1 protein_coding retained_intron MGP_C3HHeJ_T0059502.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185962791 185963713 + Rtel1 protein_coding processed_transcript MGP_C3HHeJ_T0059503.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185962862 185963712 + MGP_C3HHeJ_P0059503 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059504.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185963067 185963714 + MGP_C3HHeJ_P0059504 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0059505.1 MGP_C3HHeJ_G0026735.1 mouse_genomes_project 2 185963067 185963714 + MGP_C3HHeJ_P0059505 Rtel1 protein_coding protein_coding MGP_C3HHeJ_T0010407.1 MGP_C3HHeJ_G0008540.1 mouse_genomes_project 2 184806608 184806684 + Mir3091 miRNA miRNA MGP_C3HHeJ_T0013378.1 MGP_C3HHeJ_G0011482.1 mouse_genomes_project 2 44358330 44359329 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0052935.1 MGP_C3HHeJ_G0025199.1 mouse_genomes_project 2 23371023 23374379 + MGP_C3HHeJ_P0052935 Lcn10 protein_coding protein_coding MGP_C3HHeJ_T0053812.1 MGP_C3HHeJ_G0025340.1 mouse_genomes_project 2 30488954 30499847 + MGP_C3HHeJ_P0053812 Ptges2 protein_coding protein_coding MGP_C3HHeJ_T0053813.1 MGP_C3HHeJ_G0025340.1 mouse_genomes_project 2 30489498 30495090 + MGP_C3HHeJ_P0053813 Ptges2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053814.1 MGP_C3HHeJ_G0025340.1 mouse_genomes_project 2 30491602 30495643 + Ptges2 protein_coding retained_intron MGP_C3HHeJ_T0003827.1 MGP_C3HHeJ_G0003422.1 mouse_genomes_project 2 9608570 9619589 + E030013I19Rik antisense antisense MGP_C3HHeJ_T0003828.1 MGP_C3HHeJ_G0003422.1 mouse_genomes_project 2 9608943 9620604 + E030013I19Rik antisense antisense MGP_C3HHeJ_T0053108.1 MGP_C3HHeJ_G0025232.1 mouse_genomes_project 2 24651179 24656595 - MGP_C3HHeJ_P0053108 Med22 protein_coding protein_coding MGP_C3HHeJ_T0053109.1 MGP_C3HHeJ_G0025232.1 mouse_genomes_project 2 24651505 24656487 - MGP_C3HHeJ_P0053109 Med22 protein_coding protein_coding MGP_C3HHeJ_T0053110.1 MGP_C3HHeJ_G0025232.1 mouse_genomes_project 2 24654026 24656496 - MGP_C3HHeJ_P0053110 Med22 protein_coding protein_coding MGP_C3HHeJ_T0013454.1 MGP_C3HHeJ_G0011558.1 mouse_genomes_project 2 72103422 72104579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007289.1 MGP_C3HHeJ_G0005970.1 mouse_genomes_project 2 161016264 161018001 - Platr27 lincRNA lincRNA MGP_C3HHeJ_T0013658.1 MGP_C3HHeJ_G0011762.1 mouse_genomes_project 2 150474691 150475021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010265.1 MGP_C3HHeJ_G0008398.1 mouse_genomes_project 2 7698325 7698452 + Gm22091 miRNA miRNA MGP_C3HHeJ_T0017576.1 MGP_C3HHeJ_G0015200.1 mouse_genomes_project 2 88134760 88137675 - processed_transcript processed_transcript MGP_C3HHeJ_T0013632.1 MGP_C3HHeJ_G0011736.1 mouse_genomes_project 2 142630345 142630783 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010389.1 MGP_C3HHeJ_G0008522.1 mouse_genomes_project 2 162133854 162133912 + Mir3474 miRNA miRNA MGP_C3HHeJ_T0053598.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28946810 28952867 + MGP_C3HHeJ_P0053598 Tor1b protein_coding protein_coding MGP_C3HHeJ_T0053599.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28946830 28952863 + Tor1b protein_coding retained_intron MGP_C3HHeJ_T0053600.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28946842 28950346 + MGP_C3HHeJ_P0053600 Tor1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053601.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28947023 28950837 + Tor1b protein_coding retained_intron MGP_C3HHeJ_T0053602.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28947038 28952864 + MGP_C3HHeJ_P0053602 Tor1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053603.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28947603 28950725 + MGP_C3HHeJ_P0053603 Tor1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053604.1 MGP_C3HHeJ_G0025312.1 mouse_genomes_project 2 28949104 28950964 + Tor1b protein_coding processed_transcript MGP_C3HHeJ_T0099185.1 MGP_C3HHeJ_G0037379.1 mouse_genomes_project 2 30695586 30695691 - Gm23369 snRNA snRNA MGP_C3HHeJ_T0013386.1 MGP_C3HHeJ_G0011490.1 mouse_genomes_project 2 48343488 48343966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057261.1 MGP_C3HHeJ_G0026207.1 mouse_genomes_project 2 131501933 131508502 - MGP_C3HHeJ_P0057261 Il1b protein_coding protein_coding MGP_C3HHeJ_T0057262.1 MGP_C3HHeJ_G0026207.1 mouse_genomes_project 2 131502485 131504715 - Il1b protein_coding processed_transcript MGP_C3HHeJ_T0057263.1 MGP_C3HHeJ_G0026207.1 mouse_genomes_project 2 131507092 131508502 - Il1b protein_coding retained_intron MGP_C3HHeJ_T0054454.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893036 51100003 - MGP_C3HHeJ_P0054454 Neb protein_coding protein_coding MGP_C3HHeJ_T0054455.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893049 51092059 - MGP_C3HHeJ_P0054455 Neb protein_coding unknown_likely_coding MGP_C3HHeJ_T0054456.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893051 51096339 - MGP_C3HHeJ_P0054456 Neb protein_coding protein_coding MGP_C3HHeJ_T0054457.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893051 50981398 - MGP_C3HHeJ_P0054457 Neb protein_coding protein_coding MGP_C3HHeJ_T0054458.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893505 50914313 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054459.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50893649 50933436 - MGP_C3HHeJ_P0054459 Neb protein_coding protein_coding MGP_C3HHeJ_T0054460.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50912738 50919370 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054461.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50930598 50933015 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054462.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50934867 50949162 - MGP_C3HHeJ_P0054462 Neb protein_coding protein_coding MGP_C3HHeJ_T0054463.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 50978517 51015536 - MGP_C3HHeJ_P0054463 Neb protein_coding protein_coding MGP_C3HHeJ_T0054464.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 51080863 51096967 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054465.1 MGP_C3HHeJ_G0025465.1 mouse_genomes_project 2 51090042 51100003 - Neb protein_coding processed_transcript MGP_C3HHeJ_T0054265.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37047592 37266756 - MGP_C3HHeJ_P0054265 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054266.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37047596 37264656 - MGP_C3HHeJ_P0054266 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054267.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37047596 37113038 - MGP_C3HHeJ_P0054267 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054268.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37061849 37064717 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054269.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37062979 37067210 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054270.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37063387 37113043 - MGP_C3HHeJ_P0054270 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054271.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37064676 37113634 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054272.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37064795 37264714 - MGP_C3HHeJ_P0054272 Nr6a1 protein_coding protein_coding MGP_C3HHeJ_T0054273.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37066693 37112992 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0054274.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37067209 37091484 - Nr6a1 protein_coding retained_intron MGP_C3HHeJ_T0054275.1 MGP_C3HHeJ_G0025438.1 mouse_genomes_project 2 37110455 37112992 - Nr6a1 protein_coding processed_transcript MGP_C3HHeJ_T0013644.1 MGP_C3HHeJ_G0011748.1 mouse_genomes_project 2 146959818 146960126 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056514.1 MGP_C3HHeJ_G0026046.1 mouse_genomes_project 2 120406641 120422666 + MGP_C3HHeJ_P0056514 Bahd1 protein_coding protein_coding MGP_C3HHeJ_T0056515.1 MGP_C3HHeJ_G0026046.1 mouse_genomes_project 2 120407717 120432013 + MGP_C3HHeJ_P0056515 Bahd1 protein_coding protein_coding MGP_C3HHeJ_T0056516.1 MGP_C3HHeJ_G0026046.1 mouse_genomes_project 2 120422088 120432004 + MGP_C3HHeJ_P0056516 Bahd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0057068.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128563209 128599788 + MGP_C3HHeJ_P0057068 Slc27a2 protein_coding protein_coding MGP_C3HHeJ_T0057069.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128564392 128575548 + Slc27a2 protein_coding processed_transcript MGP_C3HHeJ_T0057070.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128566922 128599482 + MGP_C3HHeJ_P0057070 Slc27a2 protein_coding protein_coding MGP_C3HHeJ_T0057071.1 MGP_C3HHeJ_G0026159.1 mouse_genomes_project 2 128575622 128587048 + Slc27a2 protein_coding processed_transcript MGP_C3HHeJ_T0055433.1 MGP_C3HHeJ_G0025683.1 mouse_genomes_project 2 85986724 85987666 - MGP_C3HHeJ_P0055433 protein_coding protein_coding MGP_C3HHeJ_T0053051.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24148573 24185342 - MGP_C3HHeJ_P0053051 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053052.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24148573 24169573 - MGP_C3HHeJ_P0053052 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053053.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24148575 24185344 - MGP_C3HHeJ_P0053053 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053054.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24149431 24152233 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0053055.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24149861 24155411 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0053056.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24153559 24158937 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0053057.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24176041 24179883 - MGP_C3HHeJ_P0053057 Sec16a protein_coding protein_coding MGP_C3HHeJ_T0053058.1 MGP_C3HHeJ_G0025223.1 mouse_genomes_project 2 24182091 24185328 - Sec16a protein_coding processed_transcript MGP_C3HHeJ_T0054731.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64791964 64934121 + MGP_C3HHeJ_P0054731 protein_coding protein_coding MGP_C3HHeJ_T0054732.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64791964 64864708 + MGP_C3HHeJ_P0054732 protein_coding protein_coding MGP_C3HHeJ_T0054733.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64792004 64794435 + protein_coding retained_intron MGP_C3HHeJ_T0054734.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64843212 64846314 + protein_coding retained_intron MGP_C3HHeJ_T0054735.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64843288 64931761 + MGP_C3HHeJ_P0054735 protein_coding protein_coding MGP_C3HHeJ_T0054736.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64844961 64934121 + MGP_C3HHeJ_P0054736 protein_coding protein_coding MGP_C3HHeJ_T0054737.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64856802 64858389 + protein_coding retained_intron MGP_C3HHeJ_T0054738.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64894457 64905351 + MGP_C3HHeJ_P0054738 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054739.1 MGP_C3HHeJ_G0025512.1 mouse_genomes_project 2 64894480 64905302 + MGP_C3HHeJ_P0054739 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055083.1 MGP_C3HHeJ_G0025582.1 mouse_genomes_project 2 74226970 74229165 + MGP_C3HHeJ_P0055083 Hoxd8 protein_coding protein_coding MGP_C3HHeJ_T0055084.1 MGP_C3HHeJ_G0025582.1 mouse_genomes_project 2 74227260 74230297 + MGP_C3HHeJ_P0055084 Hoxd8 protein_coding protein_coding MGP_C3HHeJ_T0055085.1 MGP_C3HHeJ_G0025582.1 mouse_genomes_project 2 74227507 74229660 + MGP_C3HHeJ_P0055085 Hoxd8 protein_coding protein_coding MGP_C3HHeJ_T0057187.1 MGP_C3HHeJ_G0026185.1 mouse_genomes_project 2 129789274 129815594 - MGP_C3HHeJ_P0057187 Mall protein_coding protein_coding MGP_C3HHeJ_T0057839.1 MGP_C3HHeJ_G0026345.1 mouse_genomes_project 2 153182673 153206366 + MGP_C3HHeJ_P0057839 protein_coding protein_coding MGP_C3HHeJ_T0058830.1 MGP_C3HHeJ_G0026586.1 mouse_genomes_project 2 168465510 168468266 + MGP_C3HHeJ_P0058830 Spint5 protein_coding protein_coding MGP_C3HHeJ_T0058831.1 MGP_C3HHeJ_G0026586.1 mouse_genomes_project 2 168465510 168468266 + MGP_C3HHeJ_P0058831 Spint5 protein_coding protein_coding MGP_C3HHeJ_T0013275.1 MGP_C3HHeJ_G0011379.1 mouse_genomes_project 2 5744265 5744812 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057550.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135183796 135229036 - Fermt1 protein_coding retained_intron MGP_C3HHeJ_T0057551.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135183796 135229313 - MGP_C3HHeJ_P0057551 Fermt1 protein_coding protein_coding MGP_C3HHeJ_T0057552.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135219504 135225498 - Fermt1 protein_coding processed_transcript MGP_C3HHeJ_T0057553.1 MGP_C3HHeJ_G0026269.1 mouse_genomes_project 2 135222487 135225364 - Fermt1 protein_coding processed_transcript MGP_C3HHeJ_T0011425.1 MGP_C3HHeJ_G0009558.1 mouse_genomes_project 2 161976873 161976959 + Gm24379 misc_RNA misc_RNA MGP_C3HHeJ_T0057980.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750885 155790006 + MGP_C3HHeJ_P0057980 H13 protein_coding protein_coding MGP_C3HHeJ_T0057981.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750910 155764771 + H13 protein_coding retained_intron MGP_C3HHeJ_T0057982.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750912 155786404 + MGP_C3HHeJ_P0057982 H13 protein_coding protein_coding MGP_C3HHeJ_T0057983.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750912 155768036 + MGP_C3HHeJ_P0057983 H13 protein_coding protein_coding MGP_C3HHeJ_T0057984.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155750958 155785496 + MGP_C3HHeJ_P0057984 H13 protein_coding protein_coding MGP_C3HHeJ_T0057986.1 MGP_C3HHeJ_G0026392.1 mouse_genomes_project 2 155773203 155777635 + H13 protein_coding retained_intron MGP_C3HHeJ_T0055764.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545908 91551333 + MGP_C3HHeJ_P0055764 Acp2 protein_coding protein_coding MGP_C3HHeJ_T0055765.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545932 91557858 + MGP_C3HHeJ_P0055765 Acp2 protein_coding protein_coding MGP_C3HHeJ_T0055766.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545947 91555902 + Acp2 protein_coding retained_intron MGP_C3HHeJ_T0055767.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545947 91549066 + MGP_C3HHeJ_P0055767 Acp2 protein_coding protein_coding MGP_C3HHeJ_T0055768.1 MGP_C3HHeJ_G0025866.1 mouse_genomes_project 2 91545951 91546677 + Acp2 protein_coding processed_transcript MGP_C3HHeJ_T0010261.1 MGP_C3HHeJ_G0008394.1 mouse_genomes_project 2 7694914 7695013 + Mir466f-3 miRNA miRNA MGP_C3HHeJ_T0057410.1 MGP_C3HHeJ_G0026239.1 mouse_genomes_project 2 133278946 133297299 - MGP_C3HHeJ_P0057410 Siglec1 protein_coding protein_coding MGP_C3HHeJ_T0057411.1 MGP_C3HHeJ_G0026239.1 mouse_genomes_project 2 133281780 133297299 - MGP_C3HHeJ_P0057411 Siglec1 protein_coding protein_coding MGP_C3HHeJ_T0057412.1 MGP_C3HHeJ_G0026239.1 mouse_genomes_project 2 133294106 133297299 - MGP_C3HHeJ_P0057412 Siglec1 protein_coding protein_coding MGP_C3HHeJ_T0057969.1 MGP_C3HHeJ_G0026384.1 mouse_genomes_project 2 155612235 155613620 - MGP_C3HHeJ_P0057969 Defb29 protein_coding protein_coding MGP_C3HHeJ_T0007266.1 MGP_C3HHeJ_G0005953.1 mouse_genomes_project 2 150539067 150545742 + A530006G24Rik lincRNA lincRNA MGP_C3HHeJ_T0057617.1 MGP_C3HHeJ_G0026283.1 mouse_genomes_project 2 142008344 142179099 + MGP_C3HHeJ_P0057617 Sptlc3 protein_coding protein_coding MGP_C3HHeJ_T0057618.1 MGP_C3HHeJ_G0026283.1 mouse_genomes_project 2 142008351 142179717 + MGP_C3HHeJ_P0057618 Sptlc3 protein_coding protein_coding MGP_C3HHeJ_T0056517.1 MGP_C3HHeJ_G0026047.1 mouse_genomes_project 2 120433970 120436060 + MGP_C3HHeJ_P0056517 Chst14 protein_coding protein_coding MGP_C3HHeJ_T0056518.1 MGP_C3HHeJ_G0026047.1 mouse_genomes_project 2 120433988 120436054 + MGP_C3HHeJ_P0056518 Chst14 protein_coding protein_coding MGP_C3HHeJ_T0010378.1 MGP_C3HHeJ_G0008511.1 mouse_genomes_project 2 147351473 147351564 - Gm24823 miRNA miRNA MGP_C3HHeJ_T0056663.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121902324 121940506 - MGP_C3HHeJ_P0056663 Vps39 protein_coding protein_coding MGP_C3HHeJ_T0056664.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121902324 121940494 - MGP_C3HHeJ_P0056664 Vps39 protein_coding protein_coding MGP_C3HHeJ_T0056665.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121902690 121940490 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0056666.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121903907 121905455 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056667.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121905718 121909389 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056668.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121907751 121940478 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056669.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121911750 121919171 - Vps39 protein_coding retained_intron MGP_C3HHeJ_T0056670.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121925040 121931533 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0056671.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121930579 121940490 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0056672.1 MGP_C3HHeJ_G0026084.1 mouse_genomes_project 2 121935783 121940494 - Vps39 protein_coding processed_transcript MGP_C3HHeJ_T0100432.1 MGP_C3HHeJ_G0038626.1 mouse_genomes_project 2 19383025 19383148 - Gm24886 snoRNA snoRNA MGP_C3HHeJ_T0004051.1 MGP_C3HHeJ_G0003581.1 mouse_genomes_project 2 154718196 154725175 - Tmem74bos antisense antisense MGP_C3HHeJ_T0004052.1 MGP_C3HHeJ_G0003581.1 mouse_genomes_project 2 154719749 154724899 - Tmem74bos antisense antisense MGP_C3HHeJ_T0098579.1 MGP_C3HHeJ_G0036775.1 mouse_genomes_project 2 185586397 185589749 + 9230112E08Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0098580.1 MGP_C3HHeJ_G0036775.1 mouse_genomes_project 2 185586705 185588065 + 9230112E08Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0017577.1 MGP_C3HHeJ_G0015201.1 mouse_genomes_project 2 88884945 88888463 - Gm13760 processed_transcript processed_transcript MGP_C3HHeJ_T0017578.1 MGP_C3HHeJ_G0015201.1 mouse_genomes_project 2 88885255 88888935 - Gm13760 processed_transcript processed_transcript MGP_C3HHeJ_T0100506.1 MGP_C3HHeJ_G0038700.1 mouse_genomes_project 2 161847230 161847363 + Gm25187 snoRNA snoRNA MGP_C3HHeJ_T0058083.1 MGP_C3HHeJ_G0026415.1 mouse_genomes_project 2 156906073 156942075 + MGP_C3HHeJ_P0058083 Mapre1 protein_coding protein_coding MGP_C3HHeJ_T0058084.1 MGP_C3HHeJ_G0026415.1 mouse_genomes_project 2 156906401 156924593 + Mapre1 protein_coding processed_transcript MGP_C3HHeJ_T0058085.1 MGP_C3HHeJ_G0026415.1 mouse_genomes_project 2 156910192 156922589 + Mapre1 protein_coding processed_transcript MGP_C3HHeJ_T0055344.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480284 84484875 + MGP_C3HHeJ_P0055344 Ypel4 protein_coding protein_coding MGP_C3HHeJ_T0055345.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480324 84484875 + MGP_C3HHeJ_P0055345 Ypel4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0055346.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480349 84481845 + Ypel4 protein_coding processed_transcript MGP_C3HHeJ_T0055347.1 MGP_C3HHeJ_G0025638.1 mouse_genomes_project 2 84480453 84484869 + Ypel4 protein_coding retained_intron MGP_C3HHeJ_T0059405.1 MGP_C3HHeJ_G0026720.1 mouse_genomes_project 2 185505210 185521782 - MGP_C3HHeJ_P0059405 Ythdf1 protein_coding protein_coding MGP_C3HHeJ_T0059406.1 MGP_C3HHeJ_G0026720.1 mouse_genomes_project 2 185506203 185521782 - MGP_C3HHeJ_P0059406 Ythdf1 protein_coding protein_coding MGP_C3HHeJ_T0059407.1 MGP_C3HHeJ_G0026720.1 mouse_genomes_project 2 185512602 185521220 - MGP_C3HHeJ_P0059407 Ythdf1 protein_coding protein_coding MGP_C3HHeJ_T0052184.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7104212 7244735 - MGP_C3HHeJ_P0052184 Taf3 protein_coding protein_coding MGP_C3HHeJ_T0052185.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7104954 7133131 - Taf3 protein_coding processed_transcript MGP_C3HHeJ_T0052186.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7105739 7108498 - MGP_C3HHeJ_P0052186 Taf3 protein_coding protein_coding MGP_C3HHeJ_T0052187.1 MGP_C3HHeJ_G0025069.1 mouse_genomes_project 2 7105741 7108072 - MGP_C3HHeJ_P0052187 Taf3 protein_coding protein_coding MGP_C3HHeJ_T0007127.1 MGP_C3HHeJ_G0005839.1 mouse_genomes_project 2 59075442 59076166 + Gm13620 lincRNA lincRNA MGP_C3HHeJ_T0055645.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91067618 91105036 + MGP_C3HHeJ_P0055645 Fnbp4 protein_coding protein_coding MGP_C3HHeJ_T0055646.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91067852 91099475 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055647.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91075199 91080453 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055648.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91080602 91086782 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055649.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91081405 91090854 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055650.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91086469 91091075 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055651.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91091103 91099369 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055652.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91091660 91099458 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0055653.1 MGP_C3HHeJ_G0025852.1 mouse_genomes_project 2 91098542 91099366 + Fnbp4 protein_coding processed_transcript MGP_C3HHeJ_T0054858.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217532 69227756 + MGP_C3HHeJ_P0054858 Ssb protein_coding protein_coding MGP_C3HHeJ_T0054859.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217532 69227816 + MGP_C3HHeJ_P0054859 Ssb protein_coding protein_coding MGP_C3HHeJ_T0054860.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217593 69227480 + MGP_C3HHeJ_P0054860 Ssb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054861.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69217656 69223519 + MGP_C3HHeJ_P0054861 Ssb protein_coding protein_coding MGP_C3HHeJ_T0054862.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69219258 69225117 + Ssb protein_coding processed_transcript MGP_C3HHeJ_T0054863.1 MGP_C3HHeJ_G0025539.1 mouse_genomes_project 2 69224745 69227480 + MGP_C3HHeJ_P0054863 Ssb protein_coding protein_coding MGP_C3HHeJ_T0007307.1 MGP_C3HHeJ_G0005988.1 mouse_genomes_project 2 170126372 170146678 + Gm11468 lincRNA lincRNA MGP_C3HHeJ_T0003882.1 MGP_C3HHeJ_G0003465.1 mouse_genomes_project 2 31589767 31592171 + Gm13536 antisense antisense MGP_C3HHeJ_T0013647.1 MGP_C3HHeJ_G0011751.1 mouse_genomes_project 2 147672025 147672846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007316.1 MGP_C3HHeJ_G0005994.1 mouse_genomes_project 2 171729200 171734303 + Gm14321 lincRNA lincRNA MGP_C3HHeJ_T0007317.1 MGP_C3HHeJ_G0005994.1 mouse_genomes_project 2 171729269 171733860 + Gm14321 lincRNA lincRNA MGP_C3HHeJ_T0017567.1 MGP_C3HHeJ_G0015191.1 mouse_genomes_project 2 72897300 72930824 + D230022J07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0054835.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69065680 69066926 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054836.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69065940 69100581 + MGP_C3HHeJ_P0054836 Ppig protein_coding protein_coding MGP_C3HHeJ_T0054837.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69065989 69079533 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054838.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69066038 69078568 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054839.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69066228 69100581 + MGP_C3HHeJ_P0054839 Ppig protein_coding protein_coding MGP_C3HHeJ_T0054840.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69066461 69082349 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054841.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69072209 69082052 + MGP_C3HHeJ_P0054841 Ppig protein_coding protein_coding MGP_C3HHeJ_T0054842.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69077987 69088311 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054843.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69078235 69079286 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054844.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69078404 69079303 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054845.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69081917 69088397 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0054846.1 MGP_C3HHeJ_G0025535.1 mouse_genomes_project 2 69088452 69096126 + Ppig protein_coding processed_transcript MGP_C3HHeJ_T0003908.1 MGP_C3HHeJ_G0003484.1 mouse_genomes_project 2 59524849 59528016 + Gm13583 antisense antisense MGP_C3HHeJ_T0003909.1 MGP_C3HHeJ_G0003484.1 mouse_genomes_project 2 59524851 59524974 + Gm13583 antisense antisense MGP_C3HHeJ_T0003910.1 MGP_C3HHeJ_G0003484.1 mouse_genomes_project 2 59526447 59527367 + Gm13583 antisense antisense MGP_C3HHeJ_T0056452.1 MGP_C3HHeJ_G0026033.1 mouse_genomes_project 2 119756341 119851914 - MGP_C3HHeJ_P0056452 Gpr176 protein_coding protein_coding MGP_C3HHeJ_T0010358.1 MGP_C3HHeJ_G0008491.1 mouse_genomes_project 2 106797496 106797621 + Gm22002 miRNA miRNA MGP_C3HHeJ_T0007055.1 MGP_C3HHeJ_G0005783.1 mouse_genomes_project 2 8264670 8288457 + Gm13264 lincRNA lincRNA MGP_C3HHeJ_T0098283.1 MGP_C3HHeJ_G0036495.1 mouse_genomes_project 2 107679668 107679791 + Gm22813 scaRNA scaRNA MGP_C3HHeJ_T0010322.1 MGP_C3HHeJ_G0008455.1 mouse_genomes_project 2 35986270 35986354 - Mir5128 miRNA miRNA MGP_C3HHeJ_T0007161.1 MGP_C3HHeJ_G0005868.1 mouse_genomes_project 2 75294418 75295000 - Gm13656 lincRNA lincRNA MGP_C3HHeJ_T0001067.1 MGP_C3HHeJ_G0001003.1 mouse_genomes_project 2 151753966 151754331 - TEC TEC MGP_C3HHeJ_T0055686.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272159 91319980 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055687.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272174 91355157 + MGP_C3HHeJ_P0055687 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055688.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272235 91330841 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055689.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91272314 91333747 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055690.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91273652 91353240 + MGP_C3HHeJ_P0055690 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055691.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91297618 91320042 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0055692.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91319971 91355150 + MGP_C3HHeJ_P0055692 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055693.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91330803 91355157 + MGP_C3HHeJ_P0055693 Celf1 protein_coding protein_coding MGP_C3HHeJ_T0055694.1 MGP_C3HHeJ_G0025858.1 mouse_genomes_project 2 91344724 91349032 + Celf1 protein_coding processed_transcript MGP_C3HHeJ_T0057351.1 MGP_C3HHeJ_G0026231.1 mouse_genomes_project 2 132818464 132823702 - MGP_C3HHeJ_P0057351 Lzts3 protein_coding protein_coding MGP_C3HHeJ_T0057352.1 MGP_C3HHeJ_G0026231.1 mouse_genomes_project 2 132818464 132823702 - MGP_C3HHeJ_P0057352 Lzts3 protein_coding protein_coding MGP_C3HHeJ_T0057353.1 MGP_C3HHeJ_G0026231.1 mouse_genomes_project 2 132818468 132829577 - MGP_C3HHeJ_P0057353 Lzts3 protein_coding protein_coding MGP_C3HHeJ_T0053971.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350052 31381703 + MGP_C3HHeJ_P0053971 Angptl2 protein_coding protein_coding MGP_C3HHeJ_T0053972.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350056 31378505 + Angptl2 protein_coding retained_intron MGP_C3HHeJ_T0053973.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350081 31364108 + Angptl2 protein_coding retained_intron MGP_C3HHeJ_T0053974.1 MGP_C3HHeJ_G0025366.1 mouse_genomes_project 2 31350100 31376379 + MGP_C3HHeJ_P0053974 Angptl2 protein_coding protein_coding MGP_C3HHeJ_T0057279.1 MGP_C3HHeJ_G0026210.1 mouse_genomes_project 2 131830958 131844239 - MGP_C3HHeJ_P0057279 protein_coding protein_coding MGP_C3HHeJ_T0057280.1 MGP_C3HHeJ_G0026210.1 mouse_genomes_project 2 131832889 131843064 - MGP_C3HHeJ_P0057280 protein_coding protein_coding MGP_C3HHeJ_T0057281.1 MGP_C3HHeJ_G0026210.1 mouse_genomes_project 2 131842391 131844250 - protein_coding retained_intron MGP_C3HHeJ_T0055439.1 MGP_C3HHeJ_G0025689.1 mouse_genomes_project 2 86073360 86074320 - MGP_C3HHeJ_P0055439 Olfr1047 protein_coding protein_coding MGP_C3HHeJ_T0057819.1 MGP_C3HHeJ_G0026337.1 mouse_genomes_project 2 151692561 151697485 + MGP_C3HHeJ_P0057819 Cst9 protein_coding protein_coding MGP_C3HHeJ_T0058895.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728422 168730781 + MGP_C3HHeJ_P0058895 Slc12a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058896.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728436 168742517 + Slc12a5 protein_coding processed_transcript MGP_C3HHeJ_T0058897.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728444 168769233 + MGP_C3HHeJ_P0058897 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058898.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168728466 168771394 + MGP_C3HHeJ_P0058898 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058899.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168736007 168771403 + MGP_C3HHeJ_P0058899 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058900.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168736264 168771399 + MGP_C3HHeJ_P0058900 Slc12a5 protein_coding protein_coding MGP_C3HHeJ_T0058901.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168736306 168761207 + MGP_C3HHeJ_P0058901 Slc12a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058902.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168753352 168757574 + Slc12a5 protein_coding retained_intron MGP_C3HHeJ_T0058903.1 MGP_C3HHeJ_G0026602.1 mouse_genomes_project 2 168768254 168771394 + Slc12a5 protein_coding retained_intron MGP_C3HHeJ_T0010257.1 MGP_C3HHeJ_G0008390.1 mouse_genomes_project 2 7691610 7691731 + Mir669d miRNA miRNA MGP_C3HHeJ_T0007117.1 MGP_C3HHeJ_G0005831.1 mouse_genomes_project 2 49940073 49995125 + Gm13497 lincRNA lincRNA MGP_C3HHeJ_T0054774.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 66798591 67057447 + B3galt1 protein_coding processed_transcript MGP_C3HHeJ_T0054775.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 66994100 67384750 + MGP_C3HHeJ_P0054775 B3galt1 protein_coding protein_coding MGP_C3HHeJ_T0054776.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 67363110 67387114 + MGP_C3HHeJ_P0054776 B3galt1 protein_coding protein_coding MGP_C3HHeJ_T0054777.1 MGP_C3HHeJ_G0025521.1 mouse_genomes_project 2 67384312 67389289 + MGP_C3HHeJ_P0054777 B3galt1 protein_coding protein_coding MGP_C3HHeJ_T0017561.1 MGP_C3HHeJ_G0015186.1 mouse_genomes_project 2 65598261 65612147 + Gm13630 processed_transcript processed_transcript MGP_C3HHeJ_T0004101.1 MGP_C3HHeJ_G0003621.1 mouse_genomes_project 2 174515722 174517734 + Bcas1os1 antisense antisense MGP_C3HHeJ_T0053128.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663213 24667030 + MGP_C3HHeJ_P0053128 Surf2 protein_coding protein_coding MGP_C3HHeJ_T0053129.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663227 24667019 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0053130.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663515 24666668 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0053131.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663515 24667013 + Surf2 protein_coding retained_intron MGP_C3HHeJ_T0053132.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24663659 24666800 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0053133.1 MGP_C3HHeJ_G0025235.1 mouse_genomes_project 2 24664274 24666682 + Surf2 protein_coding processed_transcript MGP_C3HHeJ_T0099206.1 MGP_C3HHeJ_G0037400.1 mouse_genomes_project 2 111173884 111173991 + Gm22997 snRNA snRNA MGP_C3HHeJ_T0099219.1 MGP_C3HHeJ_G0037413.1 mouse_genomes_project 2 135901044 135901151 - Gm25258 snRNA snRNA MGP_C3HHeJ_T0052311.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251077 10319449 + MGP_C3HHeJ_P0052311 Pter protein_coding protein_coding MGP_C3HHeJ_T0052312.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251098 10298150 + Pter protein_coding processed_transcript MGP_C3HHeJ_T0052313.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251105 10319450 + MGP_C3HHeJ_P0052313 Pter protein_coding protein_coding MGP_C3HHeJ_T0052314.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251128 10321924 + MGP_C3HHeJ_P0052314 Pter protein_coding protein_coding MGP_C3HHeJ_T0052315.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251136 10320083 + MGP_C3HHeJ_P0052315 Pter protein_coding protein_coding MGP_C3HHeJ_T0052316.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10251137 10299532 + Pter protein_coding processed_transcript MGP_C3HHeJ_T0052317.1 MGP_C3HHeJ_G0025085.1 mouse_genomes_project 2 10295559 10320328 + Pter protein_coding retained_intron MGP_C3HHeJ_T0056083.1 MGP_C3HHeJ_G0025921.1 mouse_genomes_project 2 103743509 103796537 - MGP_C3HHeJ_P0056083 Pdhx protein_coding protein_coding MGP_C3HHeJ_T0056084.1 MGP_C3HHeJ_G0025921.1 mouse_genomes_project 2 103755728 103796359 - MGP_C3HHeJ_P0056084 Pdhx protein_coding protein_coding MGP_C3HHeJ_T0056085.1 MGP_C3HHeJ_G0025921.1 mouse_genomes_project 2 103762649 103796486 - MGP_C3HHeJ_P0056085 Pdhx protein_coding protein_coding MGP_C3HHeJ_T0003971.1 MGP_C3HHeJ_G0003526.1 mouse_genomes_project 2 105004249 105023730 + Gm13883 antisense antisense MGP_C3HHeJ_T0003972.1 MGP_C3HHeJ_G0003526.1 mouse_genomes_project 2 105004249 105008131 + Gm13883 antisense antisense MGP_C3HHeJ_T0059104.1 MGP_C3HHeJ_G0026639.1 mouse_genomes_project 2 172054051 172074839 + MGP_C3HHeJ_P0059104 Pard6b protein_coding protein_coding MGP_C3HHeJ_T0013556.1 MGP_C3HHeJ_G0011660.1 mouse_genomes_project 2 105824059 105824480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013700.1 MGP_C3HHeJ_G0011804.1 mouse_genomes_project 2 163313856 163314388 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055555.1 MGP_C3HHeJ_G0025791.1 mouse_genomes_project 2 88895784 88898593 - MGP_C3HHeJ_P0055555 protein_coding protein_coding MGP_C3HHeJ_T0052066.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1717109 1801288 + MGP_C3HHeJ_P0052066 Bend7 protein_coding protein_coding MGP_C3HHeJ_T0052067.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1717112 1789666 + MGP_C3HHeJ_P0052067 Bend7 protein_coding protein_coding MGP_C3HHeJ_T0052068.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1717423 1801650 + MGP_C3HHeJ_P0052068 Bend7 protein_coding protein_coding MGP_C3HHeJ_T0052069.1 MGP_C3HHeJ_G0025048.1 mouse_genomes_project 2 1752538 1802867 + Bend7 protein_coding processed_transcript MGP_C3HHeJ_T0013646.1 MGP_C3HHeJ_G0011750.1 mouse_genomes_project 2 147493897 147496151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055528.1 MGP_C3HHeJ_G0025766.1 mouse_genomes_project 2 88104929 88106972 - MGP_C3HHeJ_P0055528 Olfr1160 protein_coding protein_coding MGP_C3HHeJ_T0007139.1 MGP_C3HHeJ_G0005851.1 mouse_genomes_project 2 71409220 71410536 + Gm13746 lincRNA lincRNA MGP_C3HHeJ_T0059205.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177265268 177280892 + MGP_C3HHeJ_P0059205 Rae1 protein_coding protein_coding MGP_C3HHeJ_T0059206.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177265275 177274588 + MGP_C3HHeJ_P0059206 Rae1 protein_coding protein_coding MGP_C3HHeJ_T0059207.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177271771 177274587 + Rae1 protein_coding retained_intron MGP_C3HHeJ_T0059208.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177276803 177277962 + Rae1 protein_coding retained_intron MGP_C3HHeJ_T0059209.1 MGP_C3HHeJ_G0026669.1 mouse_genomes_project 2 177277601 177280580 + Rae1 protein_coding retained_intron MGP_C3HHeJ_T0010348.1 MGP_C3HHeJ_G0008481.1 mouse_genomes_project 2 93024369 93024444 + Mir7222 miRNA miRNA MGP_C3HHeJ_T0013568.1 MGP_C3HHeJ_G0011672.1 mouse_genomes_project 2 111163470 111164455 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0056935.1 MGP_C3HHeJ_G0026122.1 mouse_genomes_project 2 123737088 123737848 + Eif3j1 protein_coding processed_transcript MGP_C3HHeJ_T0056936.1 MGP_C3HHeJ_G0026122.1 mouse_genomes_project 2 123737109 123762944 + MGP_C3HHeJ_P0056936 Eif3j1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010309.1 MGP_C3HHeJ_G0008442.1 mouse_genomes_project 2 28318880 28318976 + miRNA miRNA MGP_C3HHeJ_T0052711.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848297 22860041 - MGP_C3HHeJ_P0052711 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052712.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848298 22860041 - MGP_C3HHeJ_P0052712 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052713.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848301 22859933 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0052714.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22848623 22852379 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0052715.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22849270 22852507 - MGP_C3HHeJ_P0052715 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052716.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22849739 22852187 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0052717.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22852476 22859278 - MGP_C3HHeJ_P0052717 Nelfb protein_coding protein_coding MGP_C3HHeJ_T0052718.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22852536 22858626 - Nelfb protein_coding processed_transcript MGP_C3HHeJ_T0052719.1 MGP_C3HHeJ_G0025157.1 mouse_genomes_project 2 22853752 22859252 - Nelfb protein_coding retained_intron MGP_C3HHeJ_T0013452.1 MGP_C3HHeJ_G0011556.1 mouse_genomes_project 2 72010106 72010507 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101515.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 106813681 106857091 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101516.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 106854715 107234875 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101517.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 107055109 107234875 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101518.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 107059511 107179000 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101519.1 MGP_C3HHeJ_G0039498.1 mouse_genomes_project 2 107232939 107262517 + unitary_pseudogene retained_intron MGP_C3HHeJ_T0053216.1 MGP_C3HHeJ_G0025252.1 mouse_genomes_project 2 25863074 25871582 - MGP_C3HHeJ_P0053216 Fcnb protein_coding protein_coding MGP_C3HHeJ_T0053217.1 MGP_C3HHeJ_G0025252.1 mouse_genomes_project 2 25864795 25871582 - MGP_C3HHeJ_P0053217 Fcnb protein_coding protein_coding MGP_C3HHeJ_T0053218.1 MGP_C3HHeJ_G0025252.1 mouse_genomes_project 2 25866435 25871582 - MGP_C3HHeJ_P0053218 Fcnb protein_coding protein_coding MGP_C3HHeJ_T0010406.1 MGP_C3HHeJ_G0008539.1 mouse_genomes_project 2 184728226 184728295 - Mir7005 miRNA miRNA MGP_C3HHeJ_T0001052.1 MGP_C3HHeJ_G0000989.1 mouse_genomes_project 2 68270548 68274551 + TEC TEC MGP_C3HHeJ_T0055429.1 MGP_C3HHeJ_G0025679.1 mouse_genomes_project 2 85809573 85810584 + MGP_C3HHeJ_P0055429 Olfr1031 protein_coding protein_coding MGP_C3HHeJ_T0057389.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133247899 133251356 - MGP_C3HHeJ_P0057389 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057390.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133247906 133249725 - Gfra4 protein_coding retained_intron MGP_C3HHeJ_T0057391.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133247907 133249779 - Gfra4 protein_coding retained_intron MGP_C3HHeJ_T0057392.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133248443 133250950 - MGP_C3HHeJ_P0057392 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057393.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133248475 133250950 - MGP_C3HHeJ_P0057393 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057394.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133248475 133251356 - MGP_C3HHeJ_P0057394 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057395.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133249499 133251356 - MGP_C3HHeJ_P0057395 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0057396.1 MGP_C3HHeJ_G0026237.1 mouse_genomes_project 2 133249499 133250950 - MGP_C3HHeJ_P0057396 Gfra4 protein_coding protein_coding MGP_C3HHeJ_T0056985.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608619 124664327 + MGP_C3HHeJ_P0056985 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056986.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608771 124631979 + MGP_C3HHeJ_P0056986 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056987.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608773 124631986 + MGP_C3HHeJ_P0056987 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056988.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124608791 124611922 + Sqrdl protein_coding processed_transcript MGP_C3HHeJ_T0056989.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124617137 124654071 + Sqrdl protein_coding retained_intron MGP_C3HHeJ_T0056990.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124628873 124664311 + MGP_C3HHeJ_P0056990 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0056991.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124631834 124634854 + Sqrdl protein_coding processed_transcript MGP_C3HHeJ_T0056992.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124631851 124664096 + MGP_C3HHeJ_P0056992 Sqrdl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0056993.1 MGP_C3HHeJ_G0026139.1 mouse_genomes_project 2 124651346 124664317 + MGP_C3HHeJ_P0056993 Sqrdl protein_coding protein_coding MGP_C3HHeJ_T0054500.1 MGP_C3HHeJ_G0025474.1 mouse_genomes_project 2 54314532 54486192 + MGP_C3HHeJ_P0054500 Kcnj3 protein_coding protein_coding MGP_C3HHeJ_T0054501.1 MGP_C3HHeJ_G0025474.1 mouse_genomes_project 2 54315718 54483575 + MGP_C3HHeJ_P0054501 Kcnj3 protein_coding protein_coding MGP_C3HHeJ_T0054502.1 MGP_C3HHeJ_G0025474.1 mouse_genomes_project 2 54315727 54486186 + MGP_C3HHeJ_P0054502 Kcnj3 protein_coding protein_coding MGP_C3HHeJ_T0056745.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122344009 122359323 - MGP_C3HHeJ_P0056745 Cdan1 protein_coding protein_coding MGP_C3HHeJ_T0056746.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122344365 122359324 - MGP_C3HHeJ_P0056746 Cdan1 protein_coding protein_coding MGP_C3HHeJ_T0056747.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122346029 122468343 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0056748.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122346464 122348356 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0056749.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122350201 122352261 - Cdan1 protein_coding retained_intron MGP_C3HHeJ_T0056750.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122353416 122355783 - Cdan1 protein_coding retained_intron MGP_C3HHeJ_T0056751.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122355723 122356444 - Cdan1 protein_coding retained_intron MGP_C3HHeJ_T0056752.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122356433 122359312 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0056753.1 MGP_C3HHeJ_G0026093.1 mouse_genomes_project 2 122357747 122359296 - Cdan1 protein_coding processed_transcript MGP_C3HHeJ_T0054189.1 MGP_C3HHeJ_G0025417.1 mouse_genomes_project 2 35283007 35283934 + MGP_C3HHeJ_P0054189 Olfr357 protein_coding protein_coding MGP_C3HHeJ_T0053714.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30108665 30146130 - MGP_C3HHeJ_P0053714 Fam78a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053717.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30126393 30145244 - MGP_C3HHeJ_P0053717 Fam78a protein_coding protein_coding MGP_C3HHeJ_T0053718.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30128946 30140813 - Fam78a protein_coding processed_transcript MGP_C3HHeJ_T0053719.1 MGP_C3HHeJ_G0025330.1 mouse_genomes_project 2 30144732 30146345 - Fam78a protein_coding processed_transcript MGP_C3HHeJ_T0056324.1 MGP_C3HHeJ_G0025984.1 mouse_genomes_project 2 112681639 112682578 - MGP_C3HHeJ_P0056324 protein_coding protein_coding MGP_C3HHeJ_T0053299.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26909091 26940644 + MGP_C3HHeJ_P0053299 Ttf1 protein_coding protein_coding MGP_C3HHeJ_T0053300.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26909095 26940604 + Ttf1 protein_coding retained_intron MGP_C3HHeJ_T0053301.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26927777 26934560 + Ttf1 protein_coding retained_intron MGP_C3HHeJ_T0053302.1 MGP_C3HHeJ_G0025270.1 mouse_genomes_project 2 26936372 26937656 + Ttf1 protein_coding retained_intron MGP_C3HHeJ_T0055530.1 MGP_C3HHeJ_G0025768.1 mouse_genomes_project 2 88125133 88126099 + MGP_C3HHeJ_P0055530 Olfr1161 protein_coding protein_coding MGP_C3HHeJ_T0052528.1 MGP_C3HHeJ_G0025124.1 mouse_genomes_project 2 20078680 20080477 - MGP_C3HHeJ_P0052528 protein_coding protein_coding MGP_C3HHeJ_T0100447.1 MGP_C3HHeJ_G0038641.1 mouse_genomes_project 2 35689119 35689230 - Snord90 snoRNA snoRNA MGP_C3HHeJ_T0003841.1 MGP_C3HHeJ_G0003434.1 mouse_genomes_project 2 18525868 18526812 + Gm13375 antisense antisense MGP_C3HHeJ_T0003833.1 MGP_C3HHeJ_G0003426.1 mouse_genomes_project 2 14979817 14980756 + Gm13324 antisense antisense MGP_C3HHeJ_T0057797.1 MGP_C3HHeJ_G0026325.1 mouse_genomes_project 2 151258510 151259934 + MGP_C3HHeJ_P0057797 Sstr4 protein_coding protein_coding MGP_C3HHeJ_T0058769.1 MGP_C3HHeJ_G0026559.1 mouse_genomes_project 2 167935104 167937642 - MGP_C3HHeJ_P0058769 Svs2 protein_coding protein_coding MGP_C3HHeJ_T0058770.1 MGP_C3HHeJ_G0026559.1 mouse_genomes_project 2 167935703 167937440 - MGP_C3HHeJ_P0058770 Svs2 protein_coding protein_coding MGP_C3HHeJ_T0054544.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58068314 58267498 + MGP_C3HHeJ_P0054544 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054545.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58068314 58267499 + MGP_C3HHeJ_P0054545 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054546.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069152 58250151 + MGP_C3HHeJ_P0054546 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054547.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069152 58267118 + MGP_C3HHeJ_P0054547 Pkp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054548.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069180 58267502 + MGP_C3HHeJ_P0054548 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054549.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069192 58216634 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054550.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58069215 58250154 + MGP_C3HHeJ_P0054550 Pkp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054551.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58070099 58124105 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054552.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58070099 58216866 + MGP_C3HHeJ_P0054552 Pkp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054553.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58109900 58124120 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054554.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58123756 58267501 + MGP_C3HHeJ_P0054554 Pkp4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054555.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58138822 58267499 + MGP_C3HHeJ_P0054555 Pkp4 protein_coding protein_coding MGP_C3HHeJ_T0054556.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58176620 58219737 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054557.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58234102 58267499 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0054558.1 MGP_C3HHeJ_G0025486.1 mouse_genomes_project 2 58253474 58259534 + Pkp4 protein_coding processed_transcript MGP_C3HHeJ_T0003878.1 MGP_C3HHeJ_G0003461.1 mouse_genomes_project 2 30311713 30315314 - Gm13610 antisense antisense MGP_C3HHeJ_T0100498.1 MGP_C3HHeJ_G0038692.1 mouse_genomes_project 2 154165770 154165906 + Gm23261 snoRNA snoRNA MGP_C3HHeJ_T0013364.1 MGP_C3HHeJ_G0011468.1 mouse_genomes_project 2 37630575 37631340 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054647.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720448 60812427 + MGP_C3HHeJ_P0054647 Psmd14 protein_coding protein_coding MGP_C3HHeJ_T0054648.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720496 60732997 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054649.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720514 60777023 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054650.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720534 60737835 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054651.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60720545 60773495 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054652.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60724577 60763180 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054653.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60777500 60812104 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0054654.1 MGP_C3HHeJ_G0025498.1 mouse_genomes_project 2 60788644 60812125 + Psmd14 protein_coding processed_transcript MGP_C3HHeJ_T0004039.1 MGP_C3HHeJ_G0003571.1 mouse_genomes_project 2 146430506 146466378 - Pcsk2os2 antisense antisense MGP_C3HHeJ_T0004040.1 MGP_C3HHeJ_G0003571.1 mouse_genomes_project 2 146432087 146473153 - Pcsk2os2 antisense antisense MGP_C3HHeJ_T0055421.1 MGP_C3HHeJ_G0025672.1 mouse_genomes_project 2 85636546 85644068 + MGP_C3HHeJ_P0055421 Olfr1020 protein_coding protein_coding MGP_C3HHeJ_T0100488.1 MGP_C3HHeJ_G0038682.1 mouse_genomes_project 2 132451798 132451870 + Snord57 snoRNA snoRNA MGP_C3HHeJ_T0051993.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250053 298115 + MGP_C3HHeJ_P0051993 Nmt2 protein_coding protein_coding MGP_C3HHeJ_T0051994.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250098 295959 + MGP_C3HHeJ_P0051994 Nmt2 protein_coding protein_coding MGP_C3HHeJ_T0051995.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250109 295441 + MGP_C3HHeJ_P0051995 Nmt2 protein_coding protein_coding MGP_C3HHeJ_T0051996.1 MGP_C3HHeJ_G0025035.1 mouse_genomes_project 2 250122 275182 + Nmt2 protein_coding processed_transcript MGP_C3HHeJ_T0059107.1 MGP_C3HHeJ_G0026641.1 mouse_genomes_project 2 172162431 172212678 - MGP_C3HHeJ_P0059107 Gm20716 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013421.1 MGP_C3HHeJ_G0011525.1 mouse_genomes_project 2 58932990 58933384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100431.1 MGP_C3HHeJ_G0038625.1 mouse_genomes_project 2 17466433 17466524 + Gm25859 snoRNA snoRNA MGP_C3HHeJ_T0007192.1 MGP_C3HHeJ_G0005893.1 mouse_genomes_project 2 102557723 102568876 + Gm13905 lincRNA lincRNA MGP_C3HHeJ_T0101907.1 MGP_C3HHeJ_G0039872.1 mouse_genomes_project 2 87917687 87918609 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0059185.1 MGP_C3HHeJ_G0026661.1 mouse_genomes_project 2 176581187 176586577 + MGP_C3HHeJ_P0059185 Cstf1 protein_coding protein_coding MGP_C3HHeJ_T0059186.1 MGP_C3HHeJ_G0026661.1 mouse_genomes_project 2 176581240 176592962 + MGP_C3HHeJ_P0059186 Cstf1 protein_coding protein_coding MGP_C3HHeJ_T0057958.1 MGP_C3HHeJ_G0026376.1 mouse_genomes_project 2 155461807 155466260 - MGP_C3HHeJ_P0057958 Sox12 protein_coding protein_coding MGP_C3HHeJ_T0057959.1 MGP_C3HHeJ_G0026376.1 mouse_genomes_project 2 155461810 155466243 - MGP_C3HHeJ_P0057959 Sox12 protein_coding protein_coding MGP_C3HHeJ_T0057027.1 MGP_C3HHeJ_G0026147.1 mouse_genomes_project 2 127256838 127472191 - MGP_C3HHeJ_P0057027 Fbn1 protein_coding protein_coding MGP_C3HHeJ_T0057028.1 MGP_C3HHeJ_G0026147.1 mouse_genomes_project 2 127256871 127473801 - MGP_C3HHeJ_P0057028 Fbn1 protein_coding protein_coding MGP_C3HHeJ_T0057029.1 MGP_C3HHeJ_G0026147.1 mouse_genomes_project 2 127348177 127471878 - Fbn1 protein_coding retained_intron MGP_C3HHeJ_T0099229.1 MGP_C3HHeJ_G0037423.1 mouse_genomes_project 2 168340550 168340657 + Gm25512 snRNA snRNA MGP_C3HHeJ_T0058716.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167197075 167238114 + MGP_C3HHeJ_P0058716 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0058717.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167231444 167245671 + Hnf4a protein_coding processed_transcript MGP_C3HHeJ_T0058718.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167231814 167259463 + MGP_C3HHeJ_P0058718 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0058719.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167231815 167259458 + MGP_C3HHeJ_P0058719 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0058720.1 MGP_C3HHeJ_G0026542.1 mouse_genomes_project 2 167235569 167245670 + MGP_C3HHeJ_P0058720 Hnf4a protein_coding protein_coding MGP_C3HHeJ_T0003967.1 MGP_C3HHeJ_G0003524.1 mouse_genomes_project 2 102747051 102750845 + Gm13920 antisense antisense MGP_C3HHeJ_T0052792.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014894 23018964 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052793.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014905 23018950 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052794.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014908 23015493 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052795.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23014908 23018978 - MGP_C3HHeJ_P0052795 Dpp7 protein_coding protein_coding MGP_C3HHeJ_T0052796.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23015772 23018677 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052797.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23015978 23018916 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052798.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23017086 23018916 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052799.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23017615 23018972 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052800.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23018060 23018965 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0052801.1 MGP_C3HHeJ_G0025174.1 mouse_genomes_project 2 23018321 23018951 - Dpp7 protein_coding processed_transcript MGP_C3HHeJ_T0059589.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186296693 186303724 + Tcea2 protein_coding retained_intron MGP_C3HHeJ_T0059590.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186296693 186304453 + MGP_C3HHeJ_P0059590 Tcea2 protein_coding protein_coding MGP_C3HHeJ_T0059591.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186297573 186304433 + MGP_C3HHeJ_P0059591 Tcea2 protein_coding protein_coding MGP_C3HHeJ_T0059592.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299268 186304427 + MGP_C3HHeJ_P0059592 Tcea2 protein_coding protein_coding MGP_C3HHeJ_T0059593.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299549 186302670 + Tcea2 protein_coding processed_transcript MGP_C3HHeJ_T0059594.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299958 186304293 + Tcea2 protein_coding retained_intron MGP_C3HHeJ_T0059595.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186299984 186303311 + Tcea2 protein_coding retained_intron MGP_C3HHeJ_T0059596.1 MGP_C3HHeJ_G0026749.1 mouse_genomes_project 2 186303889 186304444 + Tcea2 protein_coding processed_transcript MGP_C3HHeJ_T0055432.1 MGP_C3HHeJ_G0025682.1 mouse_genomes_project 2 85986706 85987666 - MGP_C3HHeJ_P0055432 protein_coding protein_coding MGP_C3HHeJ_T0058773.1 MGP_C3HHeJ_G0026562.1 mouse_genomes_project 2 167980919 167983426 - MGP_C3HHeJ_P0058773 Svs4 protein_coding protein_coding MGP_C3HHeJ_T0007130.1 MGP_C3HHeJ_G0005842.1 mouse_genomes_project 2 61467804 61471517 - Gm13564 lincRNA lincRNA MGP_C3HHeJ_T0098397.1 MGP_C3HHeJ_G0036603.1 mouse_genomes_project 2 57661554 57689371 + Gm13558 sense_intronic sense_intronic MGP_C3HHeJ_T0058369.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159411158 159434180 - MGP_C3HHeJ_P0058369 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058370.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159411158 159434180 - MGP_C3HHeJ_P0058370 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058371.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159416715 159434140 - MGP_C3HHeJ_P0058371 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058372.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159417151 159434202 - MGP_C3HHeJ_P0058372 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0058373.1 MGP_C3HHeJ_G0026475.1 mouse_genomes_project 2 159417180 159434185 - MGP_C3HHeJ_P0058373 Rbm12 protein_coding protein_coding MGP_C3HHeJ_T0053674.1 MGP_C3HHeJ_G0025322.1 mouse_genomes_project 2 29664439 29680178 + MGP_C3HHeJ_P0053674 Prdm12 protein_coding protein_coding MGP_C3HHeJ_T0011405.1 MGP_C3HHeJ_G0009538.1 mouse_genomes_project 2 65793127 65793411 + Gm23046 misc_RNA misc_RNA MGP_C3HHeJ_T0099207.1 MGP_C3HHeJ_G0037401.1 mouse_genomes_project 2 114545064 114545226 + Gm26505 snRNA snRNA MGP_C3HHeJ_T0056260.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110039301 110227062 - MGP_C3HHeJ_P0056260 Mettl15 protein_coding protein_coding MGP_C3HHeJ_T0056261.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110039304 110227052 - Mettl15 protein_coding processed_transcript MGP_C3HHeJ_T0056262.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110073272 110229521 - MGP_C3HHeJ_P0056262 Mettl15 protein_coding protein_coding MGP_C3HHeJ_T0056263.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110184974 110229499 - Mettl15 protein_coding retained_intron MGP_C3HHeJ_T0056264.1 MGP_C3HHeJ_G0025958.1 mouse_genomes_project 2 110185039 110229475 - Mettl15 protein_coding processed_transcript MGP_C3HHeJ_T0010313.1 MGP_C3HHeJ_G0008446.1 mouse_genomes_project 2 30249664 30249743 + Gm27805 miRNA miRNA MGP_C3HHeJ_T0059235.1 MGP_C3HHeJ_G0026679.1 mouse_genomes_project 2 178047324 178094733 + MGP_C3HHeJ_P0059235 Vapb protein_coding protein_coding MGP_C3HHeJ_T0059236.1 MGP_C3HHeJ_G0026679.1 mouse_genomes_project 2 178077348 178087644 + Vapb protein_coding processed_transcript MGP_C3HHeJ_T0055404.1 MGP_C3HHeJ_G0025655.1 mouse_genomes_project 2 85124480 85125556 - MGP_C3HHeJ_P0055404 protein_coding protein_coding MGP_C3HHeJ_T0057503.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134499767 134503883 - MGP_C3HHeJ_P0057503 protein_coding protein_coding MGP_C3HHeJ_T0057504.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134500479 134503165 - protein_coding processed_transcript MGP_C3HHeJ_T0057505.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134501899 134503536 - protein_coding retained_intron MGP_C3HHeJ_T0057506.1 MGP_C3HHeJ_G0026259.1 mouse_genomes_project 2 134501999 134503171 - protein_coding retained_intron MGP_C3HHeJ_T0099192.1 MGP_C3HHeJ_G0037386.1 mouse_genomes_project 2 52097634 52097740 - Gm25898 snRNA snRNA MGP_C3HHeJ_T0055579.1 MGP_C3HHeJ_G0025812.1 mouse_genomes_project 2 89344008 89344944 - MGP_C3HHeJ_P0055579 Olfr1225 protein_coding protein_coding MGP_C3HHeJ_T0052195.1 MGP_C3HHeJ_G0025071.1 mouse_genomes_project 2 7278907 7290134 + Kin protein_coding processed_transcript MGP_C3HHeJ_T0052196.1 MGP_C3HHeJ_G0025071.1 mouse_genomes_project 2 7278938 7291121 + MGP_C3HHeJ_P0052196 Kin protein_coding protein_coding MGP_C3HHeJ_T0052197.1 MGP_C3HHeJ_G0025071.1 mouse_genomes_project 2 7288611 7290494 + Kin protein_coding processed_transcript MGP_C3HHeJ_T0017518.1 MGP_C3HHeJ_G0015161.1 mouse_genomes_project 2 16964249 16965573 + 1810010K12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017519.1 MGP_C3HHeJ_G0015161.1 mouse_genomes_project 2 16964891 16967417 + 1810010K12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013586.1 MGP_C3HHeJ_G0011690.1 mouse_genomes_project 2 120087296 120087781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007205.1 MGP_C3HHeJ_G0005903.1 mouse_genomes_project 2 107436675 107442725 - Gm14014 lincRNA lincRNA MGP_C3HHeJ_T0013621.1 MGP_C3HHeJ_G0011725.1 mouse_genomes_project 2 134951055 134952026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055510.1 MGP_C3HHeJ_G0025749.1 mouse_genomes_project 2 87781253 87782186 - MGP_C3HHeJ_P0055510 Olfr1136 protein_coding protein_coding MGP_C3HHeJ_T0055036.1 MGP_C3HHeJ_G0025571.1 mouse_genomes_project 2 73078153 73098205 - MGP_C3HHeJ_P0055036 Chrna1 protein_coding protein_coding MGP_C3HHeJ_T0054868.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69252951 69384147 + MGP_C3HHeJ_P0054868 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054869.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69252951 69384147 + MGP_C3HHeJ_P0054869 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054870.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69253008 69296237 + MGP_C3HHeJ_P0054870 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054871.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69293520 69302878 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054872.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69348761 69369294 + MGP_C3HHeJ_P0054872 Ubr3 protein_coding protein_coding MGP_C3HHeJ_T0054873.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69353713 69382679 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054874.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69360474 69369432 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054875.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69369112 69376599 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054876.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69380261 69381320 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0054877.1 MGP_C3HHeJ_G0025541.1 mouse_genomes_project 2 69380645 69382354 + Ubr3 protein_coding processed_transcript MGP_C3HHeJ_T0055457.1 MGP_C3HHeJ_G0025706.1 mouse_genomes_project 2 86638629 86639571 - MGP_C3HHeJ_P0055457 Olfr1087 protein_coding protein_coding MGP_C3HHeJ_T0059386.1 MGP_C3HHeJ_G0026715.1 mouse_genomes_project 2 185196644 185218205 - MGP_C3HHeJ_P0059386 Tcfl5 protein_coding protein_coding MGP_C3HHeJ_T0059387.1 MGP_C3HHeJ_G0026715.1 mouse_genomes_project 2 185210900 185218205 - MGP_C3HHeJ_P0059387 Tcfl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059388.1 MGP_C3HHeJ_G0026715.1 mouse_genomes_project 2 185213112 185217993 - Tcfl5 protein_coding retained_intron MGP_C3HHeJ_T0003831.1 MGP_C3HHeJ_G0003425.1 mouse_genomes_project 2 12119266 12143541 - Gm13269 antisense antisense MGP_C3HHeJ_T0003832.1 MGP_C3HHeJ_G0003425.1 mouse_genomes_project 2 12119266 12147086 - Gm13269 antisense antisense MGP_C3HHeJ_T0013651.1 MGP_C3HHeJ_G0011755.1 mouse_genomes_project 2 149680798 149681635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099204.1 MGP_C3HHeJ_G0037398.1 mouse_genomes_project 2 91543185 91543291 + Gm23390 snRNA snRNA MGP_C3HHeJ_T0010344.1 MGP_C3HHeJ_G0008477.1 mouse_genomes_project 2 92343754 92343815 - Mir6999 miRNA miRNA MGP_C3HHeJ_T0003876.1 MGP_C3HHeJ_G0003459.1 mouse_genomes_project 2 30016582 30017436 - Gm13442 antisense antisense MGP_C3HHeJ_T0058706.1 MGP_C3HHeJ_G0026537.1 mouse_genomes_project 2 167006218 167075410 - MGP_C3HHeJ_P0058706 Jph2 protein_coding protein_coding MGP_C3HHeJ_T0058707.1 MGP_C3HHeJ_G0026537.1 mouse_genomes_project 2 167006218 167075454 - MGP_C3HHeJ_P0058707 Jph2 protein_coding protein_coding MGP_C3HHeJ_T0056660.1 MGP_C3HHeJ_G0026082.1 mouse_genomes_project 2 121846578 121869844 - MGP_C3HHeJ_P0056660 Pla2g4d protein_coding protein_coding MGP_C3HHeJ_T0057634.1 MGP_C3HHeJ_G0026289.1 mouse_genomes_project 2 142814550 142972904 - MGP_C3HHeJ_P0057634 Sel1l2 protein_coding protein_coding MGP_C3HHeJ_T0057635.1 MGP_C3HHeJ_G0026289.1 mouse_genomes_project 2 142880520 142884155 - Sel1l2 protein_coding processed_transcript MGP_C3HHeJ_T0057636.1 MGP_C3HHeJ_G0026289.1 mouse_genomes_project 2 142880525 142972906 - MGP_C3HHeJ_P0057636 Sel1l2 protein_coding protein_coding MGP_C3HHeJ_T0053815.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511028 30527661 - MGP_C3HHeJ_P0053815 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053816.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511028 30548359 - MGP_C3HHeJ_P0053816 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053817.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511031 30548382 - MGP_C3HHeJ_P0053817 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053818.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511511 30527294 - MGP_C3HHeJ_P0053818 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053819.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30511601 30520547 - MGP_C3HHeJ_P0053819 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053820.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30512750 30513113 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0053821.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30513633 30516992 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0053822.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30513713 30514372 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0053823.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30513959 30527647 - MGP_C3HHeJ_P0053823 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053824.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30515589 30518522 - MGP_C3HHeJ_P0053824 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053825.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30515671 30527646 - MGP_C3HHeJ_P0053825 Slc25a25 protein_coding protein_coding MGP_C3HHeJ_T0053826.1 MGP_C3HHeJ_G0025341.1 mouse_genomes_project 2 30523890 30527711 - Slc25a25 protein_coding retained_intron MGP_C3HHeJ_T0058157.1 MGP_C3HHeJ_G0026439.1 mouse_genomes_project 2 157830385 157830886 - MGP_C3HHeJ_P0058157 4930519P11Rik protein_coding protein_coding MGP_C3HHeJ_T0055411.1 MGP_C3HHeJ_G0025662.1 mouse_genomes_project 2 85448564 85472490 - MGP_C3HHeJ_P0055411 Olfr1006 protein_coding protein_coding MGP_C3HHeJ_T0001053.1 MGP_C3HHeJ_G0000990.1 mouse_genomes_project 2 68295681 68296547 + TEC TEC MGP_C3HHeJ_T0001016.1 MGP_C3HHeJ_G0000953.1 mouse_genomes_project 2 11993255 11995876 + TEC TEC MGP_C3HHeJ_T0058761.1 MGP_C3HHeJ_G0026554.1 mouse_genomes_project 2 167864575 167872068 - MGP_C3HHeJ_P0058761 Kcns1 protein_coding protein_coding MGP_C3HHeJ_T0099205.1 MGP_C3HHeJ_G0037399.1 mouse_genomes_project 2 103609551 103609658 + Gm23731 snRNA snRNA MGP_C3HHeJ_T0013616.1 MGP_C3HHeJ_G0011720.1 mouse_genomes_project 2 134099960 134101251 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003823.1 MGP_C3HHeJ_G0003418.1 mouse_genomes_project 2 3948323 3951146 + Gm13389 antisense antisense MGP_C3HHeJ_T0054532.1 MGP_C3HHeJ_G0025482.1 mouse_genomes_project 2 57416269 57417232 + MGP_C3HHeJ_P0054532 Gm17409 protein_coding protein_coding MGP_C3HHeJ_T0100439.1 MGP_C3HHeJ_G0038633.1 mouse_genomes_project 2 24659376 24659447 + Gm24134 snoRNA snoRNA MGP_C3HHeJ_T0003853.1 MGP_C3HHeJ_G0003442.1 mouse_genomes_project 2 23939437 23942019 + Gm27196 antisense antisense MGP_C3HHeJ_T0013541.1 MGP_C3HHeJ_G0011645.1 mouse_genomes_project 2 102865245 102865687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054830.1 MGP_C3HHeJ_G0025533.1 mouse_genomes_project 2 69005149 69019001 + MGP_C3HHeJ_P0054830 Klhl41 protein_coding protein_coding MGP_C3HHeJ_T0099222.1 MGP_C3HHeJ_G0037416.1 mouse_genomes_project 2 143023767 143023874 - Gm23846 snRNA snRNA MGP_C3HHeJ_T0017566.1 MGP_C3HHeJ_G0015190.1 mouse_genomes_project 2 71198005 71207882 + Gm13662 processed_transcript processed_transcript MGP_C3HHeJ_T0013723.1 MGP_C3HHeJ_G0011827.1 mouse_genomes_project 2 174574515 174574821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013325.1 MGP_C3HHeJ_G0011429.1 mouse_genomes_project 2 23228664 23228904 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055420.1 MGP_C3HHeJ_G0025671.1 mouse_genomes_project 2 85633595 85634528 - MGP_C3HHeJ_P0055420 Olfr1019 protein_coding protein_coding MGP_C3HHeJ_T0053186.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25020164 25187498 - MGP_C3HHeJ_P0053186 Vav2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0053187.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25020168 25187931 - MGP_C3HHeJ_P0053187 Vav2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053188.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25020168 25188052 - MGP_C3HHeJ_P0053188 Vav2 protein_coding protein_coding MGP_C3HHeJ_T0053189.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25026519 25035084 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053190.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25026983 25036622 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053191.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25027645 25029863 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053192.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25027645 25029940 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053193.1 MGP_C3HHeJ_G0025247.1 mouse_genomes_project 2 25061125 25103900 - Vav2 protein_coding processed_transcript MGP_C3HHeJ_T0053204.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25283755 25289252 + Wdr5 protein_coding processed_transcript MGP_C3HHeJ_T0053205.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25283755 25305231 + MGP_C3HHeJ_P0053205 Wdr5 protein_coding protein_coding MGP_C3HHeJ_T0053206.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25288359 25303739 + MGP_C3HHeJ_P0053206 Wdr5 protein_coding protein_coding MGP_C3HHeJ_T0053207.1 MGP_C3HHeJ_G0025249.1 mouse_genomes_project 2 25297040 25302051 + Wdr5 protein_coding processed_transcript MGP_C3HHeJ_T0054996.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71938096 71950489 + MGP_C3HHeJ_P0054996 Cdca7 protein_coding protein_coding MGP_C3HHeJ_T0054997.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71938190 71944435 + MGP_C3HHeJ_P0054997 Cdca7 protein_coding protein_coding MGP_C3HHeJ_T0054998.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71938327 71943798 + Cdca7 protein_coding processed_transcript MGP_C3HHeJ_T0054999.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71945501 71946681 + Cdca7 protein_coding processed_transcript MGP_C3HHeJ_T0055000.1 MGP_C3HHeJ_G0025562.1 mouse_genomes_project 2 71947044 71948140 + Cdca7 protein_coding processed_transcript MGP_C3HHeJ_T0056940.1 MGP_C3HHeJ_G0026124.1 mouse_genomes_project 2 123839885 123908122 - MGP_C3HHeJ_P0056940 Patl2 protein_coding protein_coding MGP_C3HHeJ_T0053232.1 MGP_C3HHeJ_G0025256.1 mouse_genomes_project 2 26289879 26292992 + MGP_C3HHeJ_P0053232 Mrps2 protein_coding protein_coding MGP_C3HHeJ_T0053233.1 MGP_C3HHeJ_G0025256.1 mouse_genomes_project 2 26289895 26292979 + Mrps2 protein_coding processed_transcript MGP_C3HHeJ_T0053234.1 MGP_C3HHeJ_G0025256.1 mouse_genomes_project 2 26289903 26292979 + Mrps2 protein_coding processed_transcript MGP_C3HHeJ_T0013657.1 MGP_C3HHeJ_G0011761.1 mouse_genomes_project 2 150216822 150217131 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054146.1 MGP_C3HHeJ_G0025393.1 mouse_genomes_project 2 34318413 34349328 + MGP_C3HHeJ_P0054146 Morn5 protein_coding protein_coding MGP_C3HHeJ_T0099234.1 MGP_C3HHeJ_G0037428.1 mouse_genomes_project 2 186123906 186124069 + Gm25184 snRNA snRNA MGP_C3HHeJ_T0004006.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131285280 131309054 - AI847159 antisense antisense MGP_C3HHeJ_T0004007.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131306569 131309054 - AI847159 antisense antisense MGP_C3HHeJ_T0004008.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131306573 131306963 - AI847159 antisense antisense MGP_C3HHeJ_T0004009.1 MGP_C3HHeJ_G0003551.1 mouse_genomes_project 2 131306617 131309089 - AI847159 antisense antisense MGP_C3HHeJ_T0007286.1 MGP_C3HHeJ_G0005969.1 mouse_genomes_project 2 160174959 160184028 - Gm14230 lincRNA lincRNA MGP_C3HHeJ_T0007287.1 MGP_C3HHeJ_G0005969.1 mouse_genomes_project 2 160182029 160184100 - Gm14230 lincRNA lincRNA MGP_C3HHeJ_T0007288.1 MGP_C3HHeJ_G0005969.1 mouse_genomes_project 2 160182679 160184008 - Gm14230 lincRNA lincRNA MGP_C3HHeJ_T0055442.1 MGP_C3HHeJ_G0025692.1 mouse_genomes_project 2 86133118 86154843 - MGP_C3HHeJ_P0055442 protein_coding protein_coding MGP_C3HHeJ_T0052209.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8400230 8493906 + Prkcq protein_coding retained_intron MGP_C3HHeJ_T0052210.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8400428 8521875 + Prkcq protein_coding retained_intron MGP_C3HHeJ_T0052211.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8453036 8539991 + MGP_C3HHeJ_P0052211 Prkcq protein_coding protein_coding MGP_C3HHeJ_T0052212.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8456936 8539986 + MGP_C3HHeJ_P0052212 Prkcq protein_coding protein_coding MGP_C3HHeJ_T0052213.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8477986 8484526 + Prkcq protein_coding retained_intron MGP_C3HHeJ_T0052214.1 MGP_C3HHeJ_G0025075.1 mouse_genomes_project 2 8480385 8540565 + Prkcq protein_coding processed_transcript MGP_C3HHeJ_T0013540.1 MGP_C3HHeJ_G0011644.1 mouse_genomes_project 2 102233387 102233598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057557.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136939659 136990067 - MGP_C3HHeJ_P0057557 Tmx4 protein_coding protein_coding MGP_C3HHeJ_T0057558.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136944477 136990054 - Tmx4 protein_coding processed_transcript MGP_C3HHeJ_T0057559.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136952908 136989963 - MGP_C3HHeJ_P0057559 Tmx4 protein_coding protein_coding MGP_C3HHeJ_T0057560.1 MGP_C3HHeJ_G0026272.1 mouse_genomes_project 2 136985431 136990012 - MGP_C3HHeJ_P0057560 Tmx4 protein_coding protein_coding MGP_C3HHeJ_T0007107.1 MGP_C3HHeJ_G0005822.1 mouse_genomes_project 2 43882172 43929984 + Gm13479 lincRNA lincRNA MGP_C3HHeJ_T0003825.1 MGP_C3HHeJ_G0003420.1 mouse_genomes_project 2 7095845 7104342 + Gm13262 antisense antisense MGP_C3HHeJ_T0013415.1 MGP_C3HHeJ_G0011519.1 mouse_genomes_project 2 57694584 57695447 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013722.1 MGP_C3HHeJ_G0011826.1 mouse_genomes_project 2 172409151 172409996 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007088.1 MGP_C3HHeJ_G0005808.1 mouse_genomes_project 2 28624146 28636566 - Gm14486 lincRNA lincRNA MGP_C3HHeJ_T0007089.1 MGP_C3HHeJ_G0005808.1 mouse_genomes_project 2 28624291 28646261 - Gm14486 lincRNA lincRNA MGP_C3HHeJ_T0055097.1 MGP_C3HHeJ_G0025587.1 mouse_genomes_project 2 74359104 74414122 + MGP_C3HHeJ_P0055097 Mtx2 protein_coding protein_coding MGP_C3HHeJ_T0055098.1 MGP_C3HHeJ_G0025587.1 mouse_genomes_project 2 74359131 74404501 + Mtx2 protein_coding retained_intron MGP_C3HHeJ_T0055099.1 MGP_C3HHeJ_G0025587.1 mouse_genomes_project 2 74404667 74412195 + Mtx2 protein_coding retained_intron MGP_C3HHeJ_T0057667.1 MGP_C3HHeJ_G0026297.1 mouse_genomes_project 2 146606281 146638740 + MGP_C3HHeJ_P0057667 Dstn protein_coding protein_coding MGP_C3HHeJ_T0052961.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23626859 23686069 - MGP_C3HHeJ_P0052961 protein_coding protein_coding MGP_C3HHeJ_T0052962.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23638927 23666832 - MGP_C3HHeJ_P0052962 protein_coding protein_coding MGP_C3HHeJ_T0052963.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23638946 23665741 - MGP_C3HHeJ_P0052963 protein_coding protein_coding MGP_C3HHeJ_T0052964.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23639120 23666740 - MGP_C3HHeJ_P0052964 protein_coding protein_coding MGP_C3HHeJ_T0052965.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23650671 23686216 - MGP_C3HHeJ_P0052965 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0052966.1 MGP_C3HHeJ_G0025209.1 mouse_genomes_project 2 23665734 23686064 - MGP_C3HHeJ_P0052966 protein_coding protein_coding MGP_C3HHeJ_T0013398.1 MGP_C3HHeJ_G0011502.1 mouse_genomes_project 2 51327304 51327587 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007234.1 MGP_C3HHeJ_G0005925.1 mouse_genomes_project 2 122141349 122147977 + Gm26899 lincRNA lincRNA MGP_C3HHeJ_T0053880.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30810354 30819017 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053881.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30812024 30820237 - MGP_C3HHeJ_P0053881 Cdk9 protein_coding protein_coding MGP_C3HHeJ_T0053882.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30812423 30821046 - MGP_C3HHeJ_P0053882 Cdk9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053883.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30812691 30820980 - MGP_C3HHeJ_P0053883 Cdk9 protein_coding protein_coding MGP_C3HHeJ_T0053884.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30814293 30817691 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053885.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30817501 30818319 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053886.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30817625 30818472 - Cdk9 protein_coding retained_intron MGP_C3HHeJ_T0053887.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30817825 30820727 - MGP_C3HHeJ_P0053887 Cdk9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053888.1 MGP_C3HHeJ_G0025352.1 mouse_genomes_project 2 30818127 30820223 - MGP_C3HHeJ_P0053888 Cdk9 protein_coding protein_coding MGP_C3HHeJ_T0054902.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70089855 70205708 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054903.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70089855 70206039 - MGP_C3HHeJ_P0054903 Tlk1 protein_coding protein_coding MGP_C3HHeJ_T0054904.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70091589 70095673 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054905.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70093760 70095353 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054906.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70123419 70205634 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054907.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70126653 70205622 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054908.1 MGP_C3HHeJ_G0025548.1 mouse_genomes_project 2 70128402 70205539 - Tlk1 protein_coding processed_transcript MGP_C3HHeJ_T0054480.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655421 51949857 + MGP_C3HHeJ_P0054480 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054481.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655429 51947935 + MGP_C3HHeJ_P0054481 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054482.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655429 51950258 + MGP_C3HHeJ_P0054482 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054483.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51655704 51949864 + MGP_C3HHeJ_P0054483 Fmnl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0054484.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51930524 51949857 + MGP_C3HHeJ_P0054484 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054485.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51936396 51949857 + MGP_C3HHeJ_P0054485 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0054486.1 MGP_C3HHeJ_G0025469.1 mouse_genomes_project 2 51942066 51948260 + MGP_C3HHeJ_P0054486 Fmnl2 protein_coding protein_coding MGP_C3HHeJ_T0011430.1 MGP_C3HHeJ_G0009563.1 mouse_genomes_project 2 178623331 178623453 + Gm27869 misc_RNA misc_RNA MGP_C3HHeJ_T0058841.1 MGP_C3HHeJ_G0026590.1 mouse_genomes_project 2 168533525 168536106 - MGP_C3HHeJ_P0058841 Tnnc2 protein_coding protein_coding MGP_C3HHeJ_T0058842.1 MGP_C3HHeJ_G0026590.1 mouse_genomes_project 2 168534308 168536332 - Tnnc2 protein_coding processed_transcript MGP_C3HHeJ_T0058557.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161470820 161522757 + MGP_C3HHeJ_P0058557 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058558.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161470831 161491078 + Rprd1b protein_coding retained_intron MGP_C3HHeJ_T0058559.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471015 161522757 + Rprd1b protein_coding processed_transcript MGP_C3HHeJ_T0058560.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471024 161522757 + MGP_C3HHeJ_P0058560 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058561.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471044 161522757 + MGP_C3HHeJ_P0058561 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058562.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161471122 161580724 + MGP_C3HHeJ_P0058562 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058563.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161485790 161519623 + MGP_C3HHeJ_P0058563 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0058564.1 MGP_C3HHeJ_G0026505.1 mouse_genomes_project 2 161490326 161514433 + MGP_C3HHeJ_P0058564 Rprd1b protein_coding protein_coding MGP_C3HHeJ_T0010400.1 MGP_C3HHeJ_G0008533.1 mouse_genomes_project 2 173115584 173115705 + Gm26469 miRNA miRNA MGP_C3HHeJ_T0099203.1 MGP_C3HHeJ_G0037397.1 mouse_genomes_project 2 85682239 85682419 - Gm24037 snRNA snRNA MGP_C3HHeJ_T0055412.1 MGP_C3HHeJ_G0025663.1 mouse_genomes_project 2 85455915 85459629 - MGP_C3HHeJ_P0055412 Olfr154 protein_coding protein_coding MGP_C3HHeJ_T0058142.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157753971 157769533 - MGP_C3HHeJ_P0058142 Necab3 protein_coding protein_coding MGP_C3HHeJ_T0058143.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157753971 157769548 - MGP_C3HHeJ_P0058143 Necab3 protein_coding protein_coding MGP_C3HHeJ_T0058144.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157754617 157756367 - Necab3 protein_coding retained_intron MGP_C3HHeJ_T0058145.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157756618 157769572 - MGP_C3HHeJ_P0058145 Necab3 protein_coding protein_coding MGP_C3HHeJ_T0058147.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157756713 157769526 - Necab3 protein_coding processed_transcript MGP_C3HHeJ_T0058151.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157764972 157769534 - Necab3 protein_coding retained_intron MGP_C3HHeJ_T0058152.1 MGP_C3HHeJ_G0026434.1 mouse_genomes_project 2 157765350 157767961 - Necab3 protein_coding retained_intron MGP_C3HHeJ_T0010310.1 MGP_C3HHeJ_G0008443.1 mouse_genomes_project 2 28691609 28691693 + Mir3089 miRNA miRNA MGP_C3HHeJ_T0052725.1 MGP_C3HHeJ_G0025159.1 mouse_genomes_project 2 22867313 22870809 + MGP_C3HHeJ_P0052725 Fam166a protein_coding protein_coding MGP_C3HHeJ_T0052726.1 MGP_C3HHeJ_G0025159.1 mouse_genomes_project 2 22869926 22870809 + Fam166a protein_coding processed_transcript MGP_C3HHeJ_T0054965.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71193708 71270780 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0054966.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71237013 71271469 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0054967.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71237024 71307017 + MGP_C3HHeJ_P0054967 Itga6 protein_coding protein_coding MGP_C3HHeJ_T0054968.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71237223 71308597 + MGP_C3HHeJ_P0054968 Itga6 protein_coding protein_coding MGP_C3HHeJ_T0054969.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71288413 71289247 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0054970.1 MGP_C3HHeJ_G0025558.1 mouse_genomes_project 2 71299361 71308662 + Itga6 protein_coding processed_transcript MGP_C3HHeJ_T0057844.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153584685 153634833 - MGP_C3HHeJ_P0057844 Acss1 protein_coding protein_coding MGP_C3HHeJ_T0057845.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153594894 153604423 - Acss1 protein_coding processed_transcript MGP_C3HHeJ_T0057846.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153594974 153604421 - Acss1 protein_coding processed_transcript MGP_C3HHeJ_T0057847.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153604287 153635075 - Acss1 protein_coding processed_transcript MGP_C3HHeJ_T0057848.1 MGP_C3HHeJ_G0026348.1 mouse_genomes_project 2 153626175 153634789 - Acss1 protein_coding retained_intron MGP_C3HHeJ_T0058096.1 MGP_C3HHeJ_G0026420.1 mouse_genomes_project 2 157094468 157109205 + MGP_C3HHeJ_P0058096 Bpifb3 protein_coding protein_coding MGP_C3HHeJ_T0058097.1 MGP_C3HHeJ_G0026420.1 mouse_genomes_project 2 157094632 157109202 + MGP_C3HHeJ_P0058097 Bpifb3 protein_coding protein_coding MGP_C3HHeJ_T0013504.1 MGP_C3HHeJ_G0011608.1 mouse_genomes_project 2 87455476 87461579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013298.1 MGP_C3HHeJ_G0011402.1 mouse_genomes_project 2 15444024 15444289 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057320.1 MGP_C3HHeJ_G0026220.1 mouse_genomes_project 2 132579513 132582536 + MGP_C3HHeJ_P0057320 Gm28372 protein_coding protein_coding MGP_C3HHeJ_T0007330.1 MGP_C3HHeJ_G0006006.1 mouse_genomes_project 2 173462082 173468506 + Gm14250 lincRNA lincRNA MGP_C3HHeJ_T0053401.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27886926 27955501 + MGP_C3HHeJ_P0053401 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053402.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27886926 27955504 + MGP_C3HHeJ_P0053402 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053403.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887043 27915212 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053404.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887045 27888516 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053405.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887046 27955498 + MGP_C3HHeJ_P0053405 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053406.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887046 27955504 + MGP_C3HHeJ_P0053406 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053407.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887046 27904950 + MGP_C3HHeJ_P0053407 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053408.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27887049 27955504 + MGP_C3HHeJ_P0053408 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053409.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27899677 27955237 + MGP_C3HHeJ_P0053409 Sptan1 protein_coding protein_coding MGP_C3HHeJ_T0053410.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27913130 27915205 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053411.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27925941 27932160 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053412.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27928145 27930704 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053413.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27945873 27949036 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053414.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27951616 27954570 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053415.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27951649 27954554 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0053416.1 MGP_C3HHeJ_G0025284.1 mouse_genomes_project 2 27954361 27955228 + Sptan1 protein_coding retained_intron MGP_C3HHeJ_T0054431.1 MGP_C3HHeJ_G0025460.1 mouse_genomes_project 2 50343747 50344645 + MGP_C3HHeJ_P0054431 Tas2r134 protein_coding protein_coding MGP_C3HHeJ_T0059582.1 MGP_C3HHeJ_G0026747.1 mouse_genomes_project 2 186209499 186213494 - MGP_C3HHeJ_P0059582 Samd10 protein_coding protein_coding MGP_C3HHeJ_T0059583.1 MGP_C3HHeJ_G0026747.1 mouse_genomes_project 2 186209502 186213480 - MGP_C3HHeJ_P0059583 Samd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059584.1 MGP_C3HHeJ_G0026747.1 mouse_genomes_project 2 186211073 186211888 - Samd10 protein_coding retained_intron MGP_C3HHeJ_T0058856.1 MGP_C3HHeJ_G0026594.1 mouse_genomes_project 2 168582591 168586777 + MGP_C3HHeJ_P0058856 Zswim1 protein_coding protein_coding MGP_C3HHeJ_T0058857.1 MGP_C3HHeJ_G0026594.1 mouse_genomes_project 2 168582918 168585174 + MGP_C3HHeJ_P0058857 Zswim1 protein_coding protein_coding MGP_C3HHeJ_T0054170.1 MGP_C3HHeJ_G0025399.1 mouse_genomes_project 2 34704201 34705131 + MGP_C3HHeJ_P0054170 Olfr339 protein_coding protein_coding MGP_C3HHeJ_T0057741.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659921 148672954 + MGP_C3HHeJ_P0057741 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057742.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659933 148672080 + MGP_C3HHeJ_P0057742 Naa20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057743.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659937 148672086 + MGP_C3HHeJ_P0057743 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057744.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659942 148672160 + MGP_C3HHeJ_P0057744 Naa20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057745.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659958 148672418 + MGP_C3HHeJ_P0057745 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057746.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659974 148666918 + MGP_C3HHeJ_P0057746 Naa20 protein_coding protein_coding MGP_C3HHeJ_T0057747.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148659977 148668523 + Naa20 protein_coding retained_intron MGP_C3HHeJ_T0057748.1 MGP_C3HHeJ_G0026314.1 mouse_genomes_project 2 148668413 148672263 + Naa20 protein_coding retained_intron MGP_C3HHeJ_T0057808.1 MGP_C3HHeJ_G0026331.1 mouse_genomes_project 2 151614446 151619526 + MGP_C3HHeJ_P0057808 Cstl1 protein_coding protein_coding MGP_C3HHeJ_T0057809.1 MGP_C3HHeJ_G0026331.1 mouse_genomes_project 2 151614449 151619471 + MGP_C3HHeJ_P0057809 Cstl1 protein_coding protein_coding MGP_C3HHeJ_T0057810.1 MGP_C3HHeJ_G0026331.1 mouse_genomes_project 2 151614484 151619471 + MGP_C3HHeJ_P0057810 Cstl1 protein_coding protein_coding MGP_C3HHeJ_T0007332.1 MGP_C3HHeJ_G0006008.1 mouse_genomes_project 2 173552411 173578504 + Gm14249 lincRNA lincRNA MGP_C3HHeJ_T0007151.1 MGP_C3HHeJ_G0005860.1 mouse_genomes_project 2 74217882 74219725 + Gm14396 lincRNA lincRNA MGP_C3HHeJ_T0007152.1 MGP_C3HHeJ_G0005860.1 mouse_genomes_project 2 74217963 74219725 + Gm14396 lincRNA lincRNA MGP_C3HHeJ_T0013370.1 MGP_C3HHeJ_G0011474.1 mouse_genomes_project 2 38554571 38554938 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0053229.1 MGP_C3HHeJ_G0025255.1 mouse_genomes_project 2 26283807 26287666 - 1700007K13Rik protein_coding processed_transcript MGP_C3HHeJ_T0053230.1 MGP_C3HHeJ_G0025255.1 mouse_genomes_project 2 26283807 26288146 - MGP_C3HHeJ_P0053230 1700007K13Rik protein_coding protein_coding MGP_C3HHeJ_T0053231.1 MGP_C3HHeJ_G0025255.1 mouse_genomes_project 2 26284154 26288130 - MGP_C3HHeJ_P0053231 1700007K13Rik protein_coding protein_coding MGP_C3HHeJ_T0055013.1 MGP_C3HHeJ_G0025566.1 mouse_genomes_project 2 72780104 72785651 + MGP_C3HHeJ_P0055013 Sp9 protein_coding protein_coding MGP_C3HHeJ_T0055014.1 MGP_C3HHeJ_G0025566.1 mouse_genomes_project 2 72780145 72794479 + Sp9 protein_coding processed_transcript MGP_C3HHeJ_T0013569.1 MGP_C3HHeJ_G0011673.1 mouse_genomes_project 2 112143142 112147886 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101931.1 MGP_C3HHeJ_G0039896.1 mouse_genomes_project 2 156858158 156894693 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0054156.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34385714 34405824 - MGP_C3HHeJ_P0054156 Rbm18 protein_coding protein_coding MGP_C3HHeJ_T0054157.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34387235 34405819 - MGP_C3HHeJ_P0054157 Rbm18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054158.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34387410 34405858 - MGP_C3HHeJ_P0054158 Rbm18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0054159.1 MGP_C3HHeJ_G0025395.1 mouse_genomes_project 2 34395448 34405854 - Rbm18 protein_coding retained_intron MGP_C3HHeJ_T0055199.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78530430 78533600 + MGP_C3HHeJ_P0055199 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055200.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78530506 78579267 + MGP_C3HHeJ_P0055200 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055201.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78531847 78586833 + MGP_C3HHeJ_P0055201 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055202.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78532040 78580079 + Ube2e3 protein_coding retained_intron MGP_C3HHeJ_T0055203.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78532134 78535752 + Ube2e3 protein_coding retained_intron MGP_C3HHeJ_T0055204.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78532478 78585837 + MGP_C3HHeJ_P0055204 Ube2e3 protein_coding protein_coding MGP_C3HHeJ_T0055205.1 MGP_C3HHeJ_G0025607.1 mouse_genomes_project 2 78583936 78585592 + Ube2e3 protein_coding retained_intron MGP_C3HHeJ_T0013429.1 MGP_C3HHeJ_G0011533.1 mouse_genomes_project 2 60983870 60984189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013637.1 MGP_C3HHeJ_G0011741.1 mouse_genomes_project 2 145231231 145232161 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055375.1 MGP_C3HHeJ_G0025648.1 mouse_genomes_project 2 84734940 84740401 + Prg3 protein_coding processed_transcript MGP_C3HHeJ_T0055376.1 MGP_C3HHeJ_G0025648.1 mouse_genomes_project 2 84734940 84740500 + MGP_C3HHeJ_P0055376 Prg3 protein_coding protein_coding MGP_C3HHeJ_T0057185.1 MGP_C3HHeJ_G0026184.1 mouse_genomes_project 2 129722649 129746078 - MGP_C3HHeJ_P0057185 Mal protein_coding protein_coding MGP_C3HHeJ_T0057186.1 MGP_C3HHeJ_G0026184.1 mouse_genomes_project 2 129724297 129745602 - MGP_C3HHeJ_P0057186 Mal protein_coding protein_coding MGP_C3HHeJ_T0013544.1 MGP_C3HHeJ_G0011648.1 mouse_genomes_project 2 103011881 103012175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013335.1 MGP_C3HHeJ_G0011439.1 mouse_genomes_project 2 29573600 29574395 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0054672.1 MGP_C3HHeJ_G0025502.1 mouse_genomes_project 2 61490059 61499179 - MGP_C3HHeJ_P0054672 Gcg protein_coding protein_coding MGP_C3HHeJ_T0054673.1 MGP_C3HHeJ_G0025502.1 mouse_genomes_project 2 61491261 61499174 - MGP_C3HHeJ_P0054673 Gcg protein_coding protein_coding MGP_C3HHeJ_T0054674.1 MGP_C3HHeJ_G0025502.1 mouse_genomes_project 2 61492099 61496207 - Gcg protein_coding processed_transcript MGP_C3HHeJ_T0054786.1 MGP_C3HHeJ_G0025523.1 mouse_genomes_project 2 67863361 67911309 + MGP_C3HHeJ_P0054786 4933409G03Rik protein_coding protein_coding MGP_C3HHeJ_T0054787.1 MGP_C3HHeJ_G0025523.1 mouse_genomes_project 2 67884173 67909627 + MGP_C3HHeJ_P0054787 4933409G03Rik protein_coding protein_coding MGP_C3HHeJ_T0055406.1 MGP_C3HHeJ_G0025657.1 mouse_genomes_project 2 85190695 85191640 - MGP_C3HHeJ_P0055406 Olfr993 protein_coding protein_coding MGP_C3HHeJ_T0056323.1 MGP_C3HHeJ_G0025983.1 mouse_genomes_project 2 112612535 112615258 - MGP_C3HHeJ_P0056323 Olfr1290 protein_coding protein_coding MGP_C3HHeJ_T0098114.1 MGP_C3HHeJ_G0036326.1 mouse_genomes_project 2 167858369 167858487 - n-R5s207 rRNA rRNA MGP_C3HHeJ_T0058227.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801366 158846765 + MGP_C3HHeJ_P0058227 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058228.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801451 158808661 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0058229.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801475 158871913 + MGP_C3HHeJ_P0058229 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058230.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801487 158836352 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0058231.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801525 158846099 + MGP_C3HHeJ_P0058231 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058232.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158801525 158846099 + MGP_C3HHeJ_P0058232 Acss2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0058233.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158833184 158833822 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0058234.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158833195 158841319 + MGP_C3HHeJ_P0058234 Acss2 protein_coding protein_coding MGP_C3HHeJ_T0058239.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158854250 158871455 + Acss2 protein_coding processed_transcript MGP_C3HHeJ_T0058240.1 MGP_C3HHeJ_G0026454.1 mouse_genomes_project 2 158858547 158862675 + Acss2 protein_coding retained_intron MGP_C3HHeJ_T0056213.1 MGP_C3HHeJ_G0025949.1 mouse_genomes_project 2 106181968 106195017 - MGP_C3HHeJ_P0056213 Rcn1 protein_coding protein_coding MGP_C3HHeJ_T0056214.1 MGP_C3HHeJ_G0025949.1 mouse_genomes_project 2 106182606 106191057 - Rcn1 protein_coding retained_intron MGP_C3HHeJ_T0013396.1 MGP_C3HHeJ_G0011500.1 mouse_genomes_project 2 50680112 50680649 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055057.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73438466 73441346 - MGP_C3HHeJ_P0055057 Atp5g3 protein_coding protein_coding MGP_C3HHeJ_T0055058.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73438466 73441345 - MGP_C3HHeJ_P0055058 Atp5g3 protein_coding protein_coding MGP_C3HHeJ_T0055059.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73438750 73441302 - Atp5g3 protein_coding processed_transcript MGP_C3HHeJ_T0055060.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73439202 73440479 - Atp5g3 protein_coding processed_transcript MGP_C3HHeJ_T0055061.1 MGP_C3HHeJ_G0025574.1 mouse_genomes_project 2 73439337 73441311 - Atp5g3 protein_coding processed_transcript MGP_C3HHeJ_T0056490.1 MGP_C3HHeJ_G0026042.1 mouse_genomes_project 2 120275062 120280297 + MGP_C3HHeJ_P0056490 Phgr1 protein_coding protein_coding MGP_C3HHeJ_T0056491.1 MGP_C3HHeJ_G0026042.1 mouse_genomes_project 2 120275062 120280298 + MGP_C3HHeJ_P0056491 Phgr1 protein_coding protein_coding MGP_C3HHeJ_T0052815.1 MGP_C3HHeJ_G0025177.1 mouse_genomes_project 2 23063954 23069402 + MGP_C3HHeJ_P0052815 Entpd2 protein_coding protein_coding MGP_C3HHeJ_T0052816.1 MGP_C3HHeJ_G0025177.1 mouse_genomes_project 2 23063996 23069373 + Entpd2 protein_coding processed_transcript MGP_C3HHeJ_T0052817.1 MGP_C3HHeJ_G0025177.1 mouse_genomes_project 2 23066833 23067930 + Entpd2 protein_coding processed_transcript MGP_C3HHeJ_T0101901.1 MGP_C3HHeJ_G0039866.1 mouse_genomes_project 2 86538966 86545268 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101906.1 MGP_C3HHeJ_G0039871.1 mouse_genomes_project 2 87908388 87908701 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017513.1 MGP_C3HHeJ_G0015158.1 mouse_genomes_project 2 11887101 11917161 + Gm13266 processed_transcript lincRNA MGP_C3HHeJ_T0017514.1 MGP_C3HHeJ_G0015158.1 mouse_genomes_project 2 11887101 11910137 + Gm13266 processed_transcript retained_intron MGP_C3HHeJ_T0017515.1 MGP_C3HHeJ_G0015158.1 mouse_genomes_project 2 11887109 11909957 + Gm13266 processed_transcript lincRNA MGP_C3HHeJ_T0101171.1 MGP_C3HHeJ_G0039321.1 mouse_genomes_project 2 50140460 50140815 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101172.1 MGP_C3HHeJ_G0039321.1 mouse_genomes_project 2 50140608 50140759 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0059237.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398354 178415503 + MGP_C3HHeJ_P0059237 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059238.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398364 178413804 + MGP_C3HHeJ_P0059238 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059239.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398368 178416596 + MGP_C3HHeJ_P0059239 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059240.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178398968 178422838 + MGP_C3HHeJ_P0059240 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059241.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178399104 178422837 + MGP_C3HHeJ_P0059241 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0059242.1 MGP_C3HHeJ_G0026680.1 mouse_genomes_project 2 178399112 178420037 + MGP_C3HHeJ_P0059242 Stx16 protein_coding protein_coding MGP_C3HHeJ_T0013353.1 MGP_C3HHeJ_G0011457.1 mouse_genomes_project 2 35367181 35372534 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0057973.1 MGP_C3HHeJ_G0026388.1 mouse_genomes_project 2 155669774 155677111 - Defb45 protein_coding processed_transcript MGP_C3HHeJ_T0057974.1 MGP_C3HHeJ_G0026388.1 mouse_genomes_project 2 155669774 155674194 - MGP_C3HHeJ_P0057974 Defb45 protein_coding protein_coding MGP_C3HHeJ_T0055247.1 MGP_C3HHeJ_G0025616.1 mouse_genomes_project 2 80144511 80182264 - MGP_C3HHeJ_P0055247 Frzb protein_coding protein_coding MGP_C3HHeJ_T0055248.1 MGP_C3HHeJ_G0025616.1 mouse_genomes_project 2 80145654 80173245 - Frzb protein_coding processed_transcript MGP_C3HHeJ_T0055235.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79541253 79851655 - MGP_C3HHeJ_P0055235 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055236.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79564252 79615729 - MGP_C3HHeJ_P0055236 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055237.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79564252 79615729 - MGP_C3HHeJ_P0055237 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055238.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79570351 79635860 - MGP_C3HHeJ_P0055238 Pde1a protein_coding protein_coding MGP_C3HHeJ_T0055239.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79611980 79750756 - Pde1a protein_coding processed_transcript MGP_C3HHeJ_T0055240.1 MGP_C3HHeJ_G0025613.1 mouse_genomes_project 2 79621247 79852279 - Pde1a protein_coding processed_transcript MGP_C3HHeJ_T0013330.1 MGP_C3HHeJ_G0011434.1 mouse_genomes_project 2 24789178 24790056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003890.1 MGP_C3HHeJ_G0003470.1 mouse_genomes_project 2 34081961 34086157 + 9030204H09Rik antisense antisense MGP_C3HHeJ_T0013597.1 MGP_C3HHeJ_G0011701.1 mouse_genomes_project 2 124223584 124224177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0055399.1 MGP_C3HHeJ_G0025652.1 mouse_genomes_project 2 84878781 84882483 + MGP_C3HHeJ_P0055399 Aplnr protein_coding protein_coding MGP_C3HHeJ_T0055400.1 MGP_C3HHeJ_G0025652.1 mouse_genomes_project 2 84879949 84882481 + MGP_C3HHeJ_P0055400 Aplnr protein_coding protein_coding MGP_C3HHeJ_T0057835.1 MGP_C3HHeJ_G0026343.1 mouse_genomes_project 2 153007572 153035495 - MGP_C3HHeJ_P0057835 Zfp120 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0057836.1 MGP_C3HHeJ_G0026343.1 mouse_genomes_project 2 153007641 153035459 - MGP_C3HHeJ_P0057836 Zfp120 protein_coding protein_coding MGP_C3HHeJ_T0057837.1 MGP_C3HHeJ_G0026343.1 mouse_genomes_project 2 153012795 153035473 - Zfp120 protein_coding processed_transcript MGP_C3HHeJ_T0057614.1 MGP_C3HHeJ_G0026282.1 mouse_genomes_project 2 140720203 141005726 + Btbd3 protein_coding processed_transcript MGP_C3HHeJ_T0057615.1 MGP_C3HHeJ_G0026282.1 mouse_genomes_project 2 140720211 141055884 + Btbd3 protein_coding processed_transcript MGP_C3HHeJ_T0057616.1 MGP_C3HHeJ_G0026282.1 mouse_genomes_project 2 140742462 140748045 + MGP_C3HHeJ_P0057616 Btbd3 protein_coding protein_coding MGP_C3HHeJ_T0001045.1 MGP_C3HHeJ_G0000982.1 mouse_genomes_project 2 37196571 37199934 + TEC TEC MGP_C3HHeJ_T0055422.1 MGP_C3HHeJ_G0025673.1 mouse_genomes_project 2 85654047 85654995 + MGP_C3HHeJ_P0055422 Olfr1022 protein_coding protein_coding MGP_C3HHeJ_T0052542.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450372 20550642 - MGP_C3HHeJ_P0052542 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052543.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450372 20550596 - MGP_C3HHeJ_P0052543 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052544.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450385 20550642 - MGP_C3HHeJ_P0052544 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052545.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450607 20550523 - MGP_C3HHeJ_P0052545 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052546.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450663 20550588 - MGP_C3HHeJ_P0052546 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052547.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450663 20550538 - MGP_C3HHeJ_P0052547 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052548.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450663 20550505 - MGP_C3HHeJ_P0052548 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052549.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450668 20550631 - MGP_C3HHeJ_P0052549 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052550.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20450668 20550586 - MGP_C3HHeJ_P0052550 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052551.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20451191 20550541 - MGP_C3HHeJ_P0052551 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052552.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20451532 20550620 - MGP_C3HHeJ_P0052552 Abi1 protein_coding protein_coding MGP_C3HHeJ_T0052553.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20452107 20457316 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0052554.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20452111 20460124 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0052555.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20456788 20470667 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0052556.1 MGP_C3HHeJ_G0025128.1 mouse_genomes_project 2 20460047 20472426 - Abi1 protein_coding retained_intron MGP_C3HHeJ_T0003928.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70926032 70938170 - Dlx1as antisense antisense MGP_C3HHeJ_T0003929.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70933617 70938178 - Dlx1as antisense antisense MGP_C3HHeJ_T0003930.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70938089 70948020 - Dlx1as antisense antisense MGP_C3HHeJ_T0003931.1 MGP_C3HHeJ_G0003500.1 mouse_genomes_project 2 70942999 70948101 - Dlx1as antisense antisense MGP_C3HHeJ_T0053523.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343293 28351536 + MGP_C3HHeJ_P0053523 Dolpp1 protein_coding protein_coding MGP_C3HHeJ_T0053524.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343455 28351534 + MGP_C3HHeJ_P0053524 Dolpp1 protein_coding protein_coding MGP_C3HHeJ_T0053525.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343455 28351534 + MGP_C3HHeJ_P0053525 Dolpp1 protein_coding protein_coding MGP_C3HHeJ_T0053526.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343467 28348331 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053527.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343469 28346939 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053528.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343478 28351535 + MGP_C3HHeJ_P0053528 Dolpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053529.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343479 28347184 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053530.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343484 28350695 + MGP_C3HHeJ_P0053530 Dolpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0053531.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28343493 28348823 + Dolpp1 protein_coding retained_intron MGP_C3HHeJ_T0053532.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28346625 28351534 + Dolpp1 protein_coding processed_transcript MGP_C3HHeJ_T0053533.1 MGP_C3HHeJ_G0025302.1 mouse_genomes_project 2 28348436 28350995 + Dolpp1 protein_coding processed_transcript MGP_C3HHeJ_T0016258.1 MGP_C3HHeJ_G0014362.1 mouse_genomes_project X 81796287 81796613 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016664.1 MGP_C3HHeJ_G0014768.1 mouse_genomes_project X 160720202 160722483 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097363.1 MGP_C3HHeJ_G0035856.1 mouse_genomes_project X 149964953 149977640 - MGP_C3HHeJ_P0097363 Ribc1 protein_coding protein_coding MGP_C3HHeJ_T0097364.1 MGP_C3HHeJ_G0035856.1 mouse_genomes_project X 149970928 149977615 - Ribc1 protein_coding processed_transcript MGP_C3HHeJ_T0095643.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45213756 45219470 - MGP_C3HHeJ_P0095643 protein_coding protein_coding MGP_C3HHeJ_T0095644.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45213756 45229154 - MGP_C3HHeJ_P0095644 protein_coding protein_coding MGP_C3HHeJ_T0095645.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45213765 45229264 - MGP_C3HHeJ_P0095645 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095646.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45217568 45226770 - MGP_C3HHeJ_P0095646 protein_coding protein_coding MGP_C3HHeJ_T0095647.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45224371 45229154 - MGP_C3HHeJ_P0095647 protein_coding protein_coding MGP_C3HHeJ_T0095648.1 MGP_C3HHeJ_G0035377.1 mouse_genomes_project X 45226350 45229140 - protein_coding processed_transcript MGP_C3HHeJ_T0015998.1 MGP_C3HHeJ_G0014102.1 mouse_genomes_project X 7377853 7378198 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016635.1 MGP_C3HHeJ_G0014739.1 mouse_genomes_project X 155612765 155613811 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016575.1 MGP_C3HHeJ_G0014679.1 mouse_genomes_project X 141930790 141933398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016026.1 MGP_C3HHeJ_G0014130.1 mouse_genomes_project X 14446153 14446649 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102364.1 MGP_C3HHeJ_G0040327.1 mouse_genomes_project X 99669523 99670260 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095933.1 MGP_C3HHeJ_G0035484.1 mouse_genomes_project X 69877987 69882083 + MGP_C3HHeJ_P0095933 Dusp9 protein_coding protein_coding MGP_C3HHeJ_T0097250.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148322193 148369718 - MGP_C3HHeJ_P0097250 Tmem29 protein_coding protein_coding MGP_C3HHeJ_T0097251.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148322193 148390293 - MGP_C3HHeJ_P0097251 Tmem29 protein_coding protein_coding MGP_C3HHeJ_T0097252.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148323215 148390293 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097253.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333030 148390297 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097254.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333030 148369687 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097255.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333036 148369486 - MGP_C3HHeJ_P0097255 Tmem29 protein_coding protein_coding MGP_C3HHeJ_T0097256.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333372 148390297 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097257.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333558 148364103 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097258.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148333623 148369486 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097259.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148341414 148390297 - Tmem29 protein_coding retained_intron MGP_C3HHeJ_T0097260.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148365729 148369744 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0097261.1 MGP_C3HHeJ_G0035842.1 mouse_genomes_project X 148366534 148369370 - Tmem29 protein_coding processed_transcript MGP_C3HHeJ_T0005520.1 MGP_C3HHeJ_G0004644.1 mouse_genomes_project X 71915288 71917105 + Gm15063 antisense antisense MGP_C3HHeJ_T0096652.1 MGP_C3HHeJ_G0035646.1 mouse_genomes_project X 99061703 99071450 - MGP_C3HHeJ_P0096652 protein_coding protein_coding MGP_C3HHeJ_T0099743.1 MGP_C3HHeJ_G0037937.1 mouse_genomes_project X 8954122 8954213 - Gm25552 snRNA snRNA MGP_C3HHeJ_T0005523.1 MGP_C3HHeJ_G0004647.1 mouse_genomes_project X 90772232 90852811 + Gm14798 antisense antisense MGP_C3HHeJ_T0096345.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81951395 82015741 + MGP_C3HHeJ_P0096345 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096346.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81951845 81995059 + MGP_C3HHeJ_P0096346 protein_coding protein_coding MGP_C3HHeJ_T0096347.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81951850 81954290 + protein_coding processed_transcript MGP_C3HHeJ_T0096348.1 MGP_C3HHeJ_G0035564.1 mouse_genomes_project X 81952814 81994849 + MGP_C3HHeJ_P0096348 protein_coding protein_coding MGP_C3HHeJ_T0096873.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430020 118084597 + MGP_C3HHeJ_P0096873 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096874.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430020 118084597 + MGP_C3HHeJ_P0096874 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096875.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430088 117432219 + Pcdh11x protein_coding retained_intron MGP_C3HHeJ_T0096876.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430088 118088874 + MGP_C3HHeJ_P0096876 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096877.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117430164 118084597 + MGP_C3HHeJ_P0096877 Pcdh11x protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096878.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117508163 118088862 + MGP_C3HHeJ_P0096878 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096879.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117508937 117559349 + MGP_C3HHeJ_P0096879 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096880.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117548727 118084597 + MGP_C3HHeJ_P0096880 Pcdh11x protein_coding protein_coding MGP_C3HHeJ_T0096881.1 MGP_C3HHeJ_G0035724.1 mouse_genomes_project X 117548727 118084595 + MGP_C3HHeJ_P0096881 Pcdh11x protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016630.1 MGP_C3HHeJ_G0014734.1 mouse_genomes_project X 154163839 154164746 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095576.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333239 43393655 + MGP_C3HHeJ_P0095576 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0095577.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333290 43382911 + MGP_C3HHeJ_P0095577 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0095578.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333307 43382894 + Ocrl protein_coding processed_transcript MGP_C3HHeJ_T0095579.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333319 43336456 + Ocrl protein_coding retained_intron MGP_C3HHeJ_T0095580.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43333842 43393660 + MGP_C3HHeJ_P0095580 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0095581.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43351316 43352459 + Ocrl protein_coding retained_intron MGP_C3HHeJ_T0095582.1 MGP_C3HHeJ_G0035358.1 mouse_genomes_project X 43364429 43374292 + MGP_C3HHeJ_P0095582 Ocrl protein_coding protein_coding MGP_C3HHeJ_T0097167.1 MGP_C3HHeJ_G0035820.1 mouse_genomes_project X 139321155 139335351 - MGP_C3HHeJ_P0097167 Irs4 protein_coding protein_coding MGP_C3HHeJ_T0011063.1 MGP_C3HHeJ_G0009196.1 mouse_genomes_project X 55607479 55607576 - Gm44500 miRNA miRNA MGP_C3HHeJ_T0016084.1 MGP_C3HHeJ_G0014188.1 mouse_genomes_project X 39688786 39689234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016617.1 MGP_C3HHeJ_G0014721.1 mouse_genomes_project X 151746860 151747626 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101288.1 MGP_C3HHeJ_G0039387.1 mouse_genomes_project X 2806274 2807094 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016027.1 MGP_C3HHeJ_G0014131.1 mouse_genomes_project X 14779563 14779960 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096905.1 MGP_C3HHeJ_G0035735.1 mouse_genomes_project X 131136635 131157548 + MGP_C3HHeJ_P0096905 Srpx2 protein_coding protein_coding MGP_C3HHeJ_T0095919.1 MGP_C3HHeJ_G0035481.1 mouse_genomes_project X 69665137 69688197 - MGP_C3HHeJ_P0095919 Haus7 protein_coding protein_coding MGP_C3HHeJ_T0095920.1 MGP_C3HHeJ_G0035481.1 mouse_genomes_project X 69665137 69688197 - MGP_C3HHeJ_P0095920 Haus7 protein_coding protein_coding MGP_C3HHeJ_T0095921.1 MGP_C3HHeJ_G0035481.1 mouse_genomes_project X 69665139 69675954 - Haus7 protein_coding processed_transcript MGP_C3HHeJ_T0016036.1 MGP_C3HHeJ_G0014140.1 mouse_genomes_project X 15960260 15960630 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011094.1 MGP_C3HHeJ_G0009227.1 mouse_genomes_project X 70591426 70591494 + Mir7092 miRNA miRNA MGP_C3HHeJ_T0016555.1 MGP_C3HHeJ_G0014659.1 mouse_genomes_project X 139480590 139481563 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016011.1 MGP_C3HHeJ_G0014115.1 mouse_genomes_project X 9993951 9994828 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016018.1 MGP_C3HHeJ_G0014122.1 mouse_genomes_project X 11600851 11602026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015988.1 MGP_C3HHeJ_G0014092.1 mouse_genomes_project X 5570141 5570607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016551.1 MGP_C3HHeJ_G0014655.1 mouse_genomes_project X 139036015 139036231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097077.1 MGP_C3HHeJ_G0035792.1 mouse_genomes_project X 135052410 136350734 + MGP_C3HHeJ_P0097077 Il1rapl2 protein_coding protein_coding MGP_C3HHeJ_T0097078.1 MGP_C3HHeJ_G0035792.1 mouse_genomes_project X 135052821 135994197 + Il1rapl2 protein_coding retained_intron MGP_C3HHeJ_T0097079.1 MGP_C3HHeJ_G0035792.1 mouse_genomes_project X 135130463 136350412 + MGP_C3HHeJ_P0097079 Il1rapl2 protein_coding protein_coding MGP_C3HHeJ_T0016269.1 MGP_C3HHeJ_G0014373.1 mouse_genomes_project X 84834295 84834637 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016090.1 MGP_C3HHeJ_G0014194.1 mouse_genomes_project X 41197974 41198209 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099752.1 MGP_C3HHeJ_G0037946.1 mouse_genomes_project X 18004937 18005047 + Gm26131 snRNA snRNA MGP_C3HHeJ_T0016574.1 MGP_C3HHeJ_G0014678.1 mouse_genomes_project X 141916618 141916774 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009302.1 MGP_C3HHeJ_G0007460.1 mouse_genomes_project X 63513177 63514194 + 1700036O09Rik lincRNA lincRNA MGP_C3HHeJ_T0096812.1 MGP_C3HHeJ_G0035699.1 mouse_genomes_project X 106499527 106501350 + MGP_C3HHeJ_P0096812 Gm6377 protein_coding protein_coding MGP_C3HHeJ_T0096813.1 MGP_C3HHeJ_G0035699.1 mouse_genomes_project X 106499529 106503211 + MGP_C3HHeJ_P0096813 Gm6377 protein_coding protein_coding MGP_C3HHeJ_T0095158.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2841699 2843933 - Rbm3 protein_coding processed_transcript MGP_C3HHeJ_T0095159.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2841702 2849274 - MGP_C3HHeJ_P0095159 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095160.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2843508 2849256 - MGP_C3HHeJ_P0095160 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095161.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845083 2849457 - MGP_C3HHeJ_P0095161 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095162.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845085 2849300 - MGP_C3HHeJ_P0095162 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095163.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845096 2849350 - MGP_C3HHeJ_P0095163 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095164.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845096 2849273 - MGP_C3HHeJ_P0095164 Rbm3 protein_coding protein_coding MGP_C3HHeJ_T0095165.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2845206 2849273 - MGP_C3HHeJ_P0095165 Rbm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095166.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2846589 2849274 - MGP_C3HHeJ_P0095166 Rbm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095167.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2846812 2849299 - Rbm3 protein_coding retained_intron MGP_C3HHeJ_T0095168.1 MGP_C3HHeJ_G0035223.1 mouse_genomes_project X 2847939 2849336 - Rbm3 protein_coding retained_intron MGP_C3HHeJ_T0097389.1 MGP_C3HHeJ_G0035861.1 mouse_genomes_project X 150322287 150347486 - MGP_C3HHeJ_P0097389 Gpr173 protein_coding protein_coding MGP_C3HHeJ_T0097390.1 MGP_C3HHeJ_G0035861.1 mouse_genomes_project X 150345797 150347486 - Gpr173 protein_coding processed_transcript MGP_C3HHeJ_T0016686.1 MGP_C3HHeJ_G0014790.1 mouse_genomes_project X 165400069 165400516 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096844.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109779374 109807779 + Zfp711 protein_coding retained_intron MGP_C3HHeJ_T0096845.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109779374 109817911 + MGP_C3HHeJ_P0096845 Zfp711 protein_coding protein_coding MGP_C3HHeJ_T0096846.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109780440 109817920 + MGP_C3HHeJ_P0096846 Zfp711 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096847.1 MGP_C3HHeJ_G0035711.1 mouse_genomes_project X 109794137 109814759 + MGP_C3HHeJ_P0096847 Zfp711 protein_coding protein_coding MGP_C3HHeJ_T0016490.1 MGP_C3HHeJ_G0014594.1 mouse_genomes_project X 128181358 128182752 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095863.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67588265 67661346 - MGP_C3HHeJ_P0095863 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095864.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67588265 67661142 - MGP_C3HHeJ_P0095864 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095865.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67588265 67661346 - MGP_C3HHeJ_P0095865 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095866.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67590827 67661346 - MGP_C3HHeJ_P0095866 Cd99l2 protein_coding protein_coding MGP_C3HHeJ_T0095867.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67607530 67661146 - Cd99l2 protein_coding retained_intron MGP_C3HHeJ_T0095868.1 MGP_C3HHeJ_G0035456.1 mouse_genomes_project X 67660395 67661102 - Cd99l2 protein_coding processed_transcript MGP_C3HHeJ_T0016601.1 MGP_C3HHeJ_G0014705.1 mouse_genomes_project X 148631964 148632559 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016339.1 MGP_C3HHeJ_G0014443.1 mouse_genomes_project X 96573716 96574010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016609.1 MGP_C3HHeJ_G0014713.1 mouse_genomes_project X 149717827 149718543 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096995.1 MGP_C3HHeJ_G0035761.1 mouse_genomes_project X 132803806 132814927 + MGP_C3HHeJ_P0096995 protein_coding protein_coding MGP_C3HHeJ_T0096676.1 MGP_C3HHeJ_G0035653.1 mouse_genomes_project X 99701025 99704928 + MGP_C3HHeJ_P0096676 protein_coding protein_coding MGP_C3HHeJ_T0096677.1 MGP_C3HHeJ_G0035653.1 mouse_genomes_project X 99701025 99704928 + MGP_C3HHeJ_P0096677 protein_coding protein_coding MGP_C3HHeJ_T0095671.1 MGP_C3HHeJ_G0035386.1 mouse_genomes_project X 47202522 47251136 - MGP_C3HHeJ_P0095671 Usp26 protein_coding protein_coding MGP_C3HHeJ_T0095672.1 MGP_C3HHeJ_G0035386.1 mouse_genomes_project X 47202522 47251047 - MGP_C3HHeJ_P0095672 Usp26 protein_coding protein_coding MGP_C3HHeJ_T0099791.1 MGP_C3HHeJ_G0037985.1 mouse_genomes_project X 107921634 107921825 - Gm26108 snRNA snRNA MGP_C3HHeJ_T0101064.1 MGP_C3HHeJ_G0039258.1 mouse_genomes_project X 154686782 154686879 - Gm23404 snoRNA snoRNA MGP_C3HHeJ_T0096703.1 MGP_C3HHeJ_G0035667.1 mouse_genomes_project X 101432158 101580212 - MGP_C3HHeJ_P0096703 Abcb7 protein_coding protein_coding MGP_C3HHeJ_T0096704.1 MGP_C3HHeJ_G0035667.1 mouse_genomes_project X 101493686 101580222 - Abcb7 protein_coding retained_intron MGP_C3HHeJ_T0016307.1 MGP_C3HHeJ_G0014411.1 mouse_genomes_project X 91086835 91087783 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096866.1 MGP_C3HHeJ_G0035718.1 mouse_genomes_project X 113618059 113657925 + MGP_C3HHeJ_P0096866 Cpxcr1 protein_coding protein_coding MGP_C3HHeJ_T0005517.1 MGP_C3HHeJ_G0004641.1 mouse_genomes_project X 67607908 67638448 + Gm16189 antisense antisense MGP_C3HHeJ_T0102363.1 MGP_C3HHeJ_G0040326.1 mouse_genomes_project X 92497002 92497537 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095590.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43607628 43644390 - MGP_C3HHeJ_P0095590 Zdhhc9 protein_coding protein_coding MGP_C3HHeJ_T0095591.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43607628 43644199 - MGP_C3HHeJ_P0095591 Zdhhc9 protein_coding protein_coding MGP_C3HHeJ_T0095592.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43616587 43644177 - Zdhhc9 protein_coding retained_intron MGP_C3HHeJ_T0095593.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43625553 43644114 - Zdhhc9 protein_coding retained_intron MGP_C3HHeJ_T0095594.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43637233 43643840 - Zdhhc9 protein_coding processed_transcript MGP_C3HHeJ_T0095595.1 MGP_C3HHeJ_G0035362.1 mouse_genomes_project X 43642179 43644170 - Zdhhc9 protein_coding processed_transcript MGP_C3HHeJ_T0096697.1 MGP_C3HHeJ_G0035665.1 mouse_genomes_project X 101101317 101129468 - MGP_C3HHeJ_P0096697 Rlim protein_coding protein_coding MGP_C3HHeJ_T0096698.1 MGP_C3HHeJ_G0035665.1 mouse_genomes_project X 101101317 101129468 - MGP_C3HHeJ_P0096698 Rlim protein_coding protein_coding MGP_C3HHeJ_T0096699.1 MGP_C3HHeJ_G0035665.1 mouse_genomes_project X 101125978 101129468 - Rlim protein_coding retained_intron MGP_C3HHeJ_T0016589.1 MGP_C3HHeJ_G0014693.1 mouse_genomes_project X 143773419 143773786 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015991.1 MGP_C3HHeJ_G0014095.1 mouse_genomes_project X 6106120 6106749 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016532.1 MGP_C3HHeJ_G0014636.1 mouse_genomes_project X 134716956 134719057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016452.1 MGP_C3HHeJ_G0014556.1 mouse_genomes_project X 114851154 114853133 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096885.1 MGP_C3HHeJ_G0035728.1 mouse_genomes_project X 124498005 124499611 + MGP_C3HHeJ_P0096885 4921511C20Rik protein_coding protein_coding MGP_C3HHeJ_T0016302.1 MGP_C3HHeJ_G0014406.1 mouse_genomes_project X 90661595 90663119 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095687.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48743625 48769967 - MGP_C3HHeJ_P0095687 Fam122b protein_coding protein_coding MGP_C3HHeJ_T0095688.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48743635 48769181 - MGP_C3HHeJ_P0095688 Fam122b protein_coding protein_coding MGP_C3HHeJ_T0095689.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48743956 48769960 - MGP_C3HHeJ_P0095689 Fam122b protein_coding protein_coding MGP_C3HHeJ_T0095690.1 MGP_C3HHeJ_G0035394.1 mouse_genomes_project X 48745072 48769967 - Fam122b protein_coding processed_transcript MGP_C3HHeJ_T0097607.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697585 162798466 + MGP_C3HHeJ_P0097607 Pir protein_coding protein_coding MGP_C3HHeJ_T0097608.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697645 162802354 + MGP_C3HHeJ_P0097608 Pir protein_coding protein_coding MGP_C3HHeJ_T0097609.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697725 162701339 + Pir protein_coding retained_intron MGP_C3HHeJ_T0097610.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697761 162779121 + Pir protein_coding retained_intron MGP_C3HHeJ_T0097611.1 MGP_C3HHeJ_G0035924.1 mouse_genomes_project X 162697787 162740490 + Pir protein_coding processed_transcript MGP_C3HHeJ_T0102350.1 MGP_C3HHeJ_G0040313.1 mouse_genomes_project X 71809711 71831514 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009293.1 MGP_C3HHeJ_G0007455.1 mouse_genomes_project X 44768314 44800737 - Gm14696 lincRNA lincRNA MGP_C3HHeJ_T0097678.1 MGP_C3HHeJ_G0035943.1 mouse_genomes_project X 165827017 165864022 - MGP_C3HHeJ_P0097678 Prps2 protein_coding protein_coding MGP_C3HHeJ_T0097679.1 MGP_C3HHeJ_G0035943.1 mouse_genomes_project X 165853695 165863983 - Prps2 protein_coding processed_transcript MGP_C3HHeJ_T0011073.1 MGP_C3HHeJ_G0009206.1 mouse_genomes_project X 62862238 62862313 - Mir463 miRNA miRNA MGP_C3HHeJ_T0095425.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31656218 31661641 - Gm14569 protein_coding processed_transcript MGP_C3HHeJ_T0095426.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31656218 31659298 - Gm14569 protein_coding processed_transcript MGP_C3HHeJ_T0095427.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31656218 31714233 - MGP_C3HHeJ_P0095427 Gm14569 protein_coding protein_coding MGP_C3HHeJ_T0095428.1 MGP_C3HHeJ_G0035308.1 mouse_genomes_project X 31670784 31704520 - Gm14569 protein_coding processed_transcript MGP_C3HHeJ_T0016317.1 MGP_C3HHeJ_G0014421.1 mouse_genomes_project X 91581556 91582972 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097585.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162363133 162386232 - MGP_C3HHeJ_P0097585 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0097586.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162366707 162377859 - Zrsr2 protein_coding retained_intron MGP_C3HHeJ_T0097587.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162367610 162371119 - Zrsr2 protein_coding retained_intron MGP_C3HHeJ_T0097588.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162376581 162378101 - Zrsr2 protein_coding retained_intron MGP_C3HHeJ_T0097589.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162378028 162386241 - MGP_C3HHeJ_P0097589 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0097590.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162381233 162385805 - Zrsr2 protein_coding processed_transcript MGP_C3HHeJ_T0097591.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162381282 162386195 - MGP_C3HHeJ_P0097591 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0097592.1 MGP_C3HHeJ_G0035917.1 mouse_genomes_project X 162384114 162386304 - MGP_C3HHeJ_P0097592 Zrsr2 protein_coding protein_coding MGP_C3HHeJ_T0101020.1 MGP_C3HHeJ_G0039214.1 mouse_genomes_project X 38051034 38051164 - Gm23705 snoRNA snoRNA MGP_C3HHeJ_T0102348.1 MGP_C3HHeJ_G0040311.1 mouse_genomes_project X 71061129 71061996 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016577.1 MGP_C3HHeJ_G0014681.1 mouse_genomes_project X 142155647 142157013 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011688.1 MGP_C3HHeJ_G0009821.1 mouse_genomes_project X 160668934 160669208 - Gm23867 misc_RNA misc_RNA MGP_C3HHeJ_T0101033.1 MGP_C3HHeJ_G0039227.1 mouse_genomes_project X 73187057 73187196 + Gm23280 snoRNA snoRNA MGP_C3HHeJ_T0095148.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2825811 2835523 - MGP_C3HHeJ_P0095148 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095149.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2825813 2835573 - MGP_C3HHeJ_P0095149 Wdr13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095150.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2825834 2835485 - MGP_C3HHeJ_P0095150 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095151.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2827814 2835538 - MGP_C3HHeJ_P0095151 Wdr13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095152.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2827918 2835535 - MGP_C3HHeJ_P0095152 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095153.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2828211 2831028 - Wdr13 protein_coding retained_intron MGP_C3HHeJ_T0095154.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2830544 2835534 - Wdr13 protein_coding processed_transcript MGP_C3HHeJ_T0095155.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2831651 2835560 - MGP_C3HHeJ_P0095155 Wdr13 protein_coding protein_coding MGP_C3HHeJ_T0095156.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2832228 2835194 - Wdr13 protein_coding retained_intron MGP_C3HHeJ_T0095157.1 MGP_C3HHeJ_G0035222.1 mouse_genomes_project X 2834799 2835607 - Wdr13 protein_coding processed_transcript MGP_C3HHeJ_T0011042.1 MGP_C3HHeJ_G0009175.1 mouse_genomes_project X 37036406 37036491 + Gm22413 miRNA miRNA MGP_C3HHeJ_T0015960.1 MGP_C3HHeJ_G0014064.1 mouse_genomes_project X 209036 210885 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011126.1 MGP_C3HHeJ_G0009259.1 mouse_genomes_project X 144726601 144726688 + Mir1912 miRNA miRNA MGP_C3HHeJ_T0096840.1 MGP_C3HHeJ_G0035709.1 mouse_genomes_project X 109572574 109592115 - MGP_C3HHeJ_P0096840 Satl1 protein_coding protein_coding MGP_C3HHeJ_T0096841.1 MGP_C3HHeJ_G0035709.1 mouse_genomes_project X 109572576 109593072 - MGP_C3HHeJ_P0096841 Satl1 protein_coding protein_coding MGP_C3HHeJ_T0016193.1 MGP_C3HHeJ_G0014297.1 mouse_genomes_project X 66660228 66660721 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016646.1 MGP_C3HHeJ_G0014750.1 mouse_genomes_project X 156538323 156544373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016492.1 MGP_C3HHeJ_G0014596.1 mouse_genomes_project X 128739878 128740908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097047.1 MGP_C3HHeJ_G0035783.1 mouse_genomes_project X 134207172 134227678 - MGP_C3HHeJ_P0097047 Glra4 protein_coding protein_coding MGP_C3HHeJ_T0097048.1 MGP_C3HHeJ_G0035783.1 mouse_genomes_project X 134216508 134227678 - Glra4 protein_coding retained_intron MGP_C3HHeJ_T0096508.1 MGP_C3HHeJ_G0035614.1 mouse_genomes_project X 96702132 96737318 + MGP_C3HHeJ_P0096508 Tmem28 protein_coding protein_coding MGP_C3HHeJ_T0011134.1 MGP_C3HHeJ_G0009267.1 mouse_genomes_project X 149877741 149877849 + Mir98 miRNA miRNA MGP_C3HHeJ_T0095318.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442619 15480921 + MGP_C3HHeJ_P0095318 Rp2 protein_coding protein_coding MGP_C3HHeJ_T0095319.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442619 15480917 + MGP_C3HHeJ_P0095319 Rp2 protein_coding protein_coding MGP_C3HHeJ_T0095320.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442697 15480917 + MGP_C3HHeJ_P0095320 Rp2 protein_coding protein_coding MGP_C3HHeJ_T0095321.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442713 15486219 + MGP_C3HHeJ_P0095321 Rp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095322.1 MGP_C3HHeJ_G0035277.1 mouse_genomes_project X 15442757 15486196 + MGP_C3HHeJ_P0095322 Rp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009365.1 MGP_C3HHeJ_G0007500.1 mouse_genomes_project X 165634388 165642331 + Gm15228 lincRNA lincRNA MGP_C3HHeJ_T0005532.1 MGP_C3HHeJ_G0004654.1 mouse_genomes_project X 139334925 139336251 + Gm15295 antisense antisense MGP_C3HHeJ_T0016033.1 MGP_C3HHeJ_G0014137.1 mouse_genomes_project X 15470020 15470813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011041.1 MGP_C3HHeJ_G0009174.1 mouse_genomes_project X 35358425 35358496 - Gm26194 miRNA miRNA MGP_C3HHeJ_T0099756.1 MGP_C3HHeJ_G0037950.1 mouse_genomes_project X 34647639 34647744 - Gm26437 snRNA snRNA MGP_C3HHeJ_T0016118.1 MGP_C3HHeJ_G0014222.1 mouse_genomes_project X 48814838 48815472 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011678.1 MGP_C3HHeJ_G0009811.1 mouse_genomes_project X 126432955 126433233 - Gm22225 misc_RNA misc_RNA MGP_C3HHeJ_T0016651.1 MGP_C3HHeJ_G0014755.1 mouse_genomes_project X 157383950 157386527 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011088.1 MGP_C3HHeJ_G0009221.1 mouse_genomes_project X 68779766 68779873 - Mir767 miRNA miRNA MGP_C3HHeJ_T0015994.1 MGP_C3HHeJ_G0014098.1 mouse_genomes_project X 6773809 6774250 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018370.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056013 2065282 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018371.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056283 2057022 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018372.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056299 2067185 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018373.1 MGP_C3HHeJ_G0015526.1 mouse_genomes_project X 2056302 2090923 - 2010204K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0095421.1 MGP_C3HHeJ_G0035306.1 mouse_genomes_project X 31560757 31575016 + Lonrf3 protein_coding retained_intron MGP_C3HHeJ_T0095422.1 MGP_C3HHeJ_G0035306.1 mouse_genomes_project X 31560757 31594729 + MGP_C3HHeJ_P0095422 Lonrf3 protein_coding protein_coding MGP_C3HHeJ_T0095423.1 MGP_C3HHeJ_G0035306.1 mouse_genomes_project X 31561620 31574159 + MGP_C3HHeJ_P0095423 Lonrf3 protein_coding protein_coding MGP_C3HHeJ_T0095393.1 MGP_C3HHeJ_G0035295.1 mouse_genomes_project X 16298018 16299233 - MGP_C3HHeJ_P0095393 Gm21876 protein_coding protein_coding MGP_C3HHeJ_T0096960.1 MGP_C3HHeJ_G0035750.1 mouse_genomes_project X 131962276 131972514 + MGP_C3HHeJ_P0096960 Armcx4 protein_coding protein_coding MGP_C3HHeJ_T0016326.1 MGP_C3HHeJ_G0014430.1 mouse_genomes_project X 93091888 93093308 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102340.1 MGP_C3HHeJ_G0040303.1 mouse_genomes_project X 33210202 33214989 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097276.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148514336 148546009 + MGP_C3HHeJ_P0097276 Pfkfb1 protein_coding protein_coding MGP_C3HHeJ_T0097277.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148514363 148538633 + Pfkfb1 protein_coding processed_transcript MGP_C3HHeJ_T0097278.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148516028 148566205 + MGP_C3HHeJ_P0097278 Pfkfb1 protein_coding protein_coding MGP_C3HHeJ_T0097279.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148520585 148566205 + MGP_C3HHeJ_P0097279 Pfkfb1 protein_coding protein_coding MGP_C3HHeJ_T0097280.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148520717 148566184 + Pfkfb1 protein_coding retained_intron MGP_C3HHeJ_T0097281.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148539634 148545532 + Pfkfb1 protein_coding processed_transcript MGP_C3HHeJ_T0097282.1 MGP_C3HHeJ_G0035845.1 mouse_genomes_project X 148546166 148564304 + Pfkfb1 protein_coding processed_transcript MGP_C3HHeJ_T0102335.1 MGP_C3HHeJ_G0040298.1 mouse_genomes_project X 8115427 8115565 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005530.1 MGP_C3HHeJ_G0004652.1 mouse_genomes_project X 100487962 100489175 - Gm26952 antisense antisense MGP_C3HHeJ_T0101072.1 MGP_C3HHeJ_G0039266.1 mouse_genomes_project X 168237527 168237646 - Gm25651 snoRNA snoRNA MGP_C3HHeJ_T0016466.1 MGP_C3HHeJ_G0014570.1 mouse_genomes_project X 117594343 117594995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095222.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4898156 4985366 - MGP_C3HHeJ_P0095222 Srpx protein_coding protein_coding MGP_C3HHeJ_T0095223.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4898734 4985393 - MGP_C3HHeJ_P0095223 Srpx protein_coding protein_coding MGP_C3HHeJ_T0095224.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4899085 4985289 - MGP_C3HHeJ_P0095224 Srpx protein_coding protein_coding MGP_C3HHeJ_T0095225.1 MGP_C3HHeJ_G0035248.1 mouse_genomes_project X 4931542 4985360 - Srpx protein_coding processed_transcript MGP_C3HHeJ_T0005527.1 MGP_C3HHeJ_G0004650.1 mouse_genomes_project X 96332127 96333856 + Gm14808 antisense antisense MGP_C3HHeJ_T0096365.1 MGP_C3HHeJ_G0035571.1 mouse_genomes_project X 85866808 85873348 - MGP_C3HHeJ_P0096365 Pet2 protein_coding protein_coding MGP_C3HHeJ_T0096366.1 MGP_C3HHeJ_G0035571.1 mouse_genomes_project X 85866808 85873348 - MGP_C3HHeJ_P0096366 Pet2 protein_coding protein_coding MGP_C3HHeJ_T0095453.1 MGP_C3HHeJ_G0035318.1 mouse_genomes_project X 32338556 32341439 - MGP_C3HHeJ_P0095453 Rpl39 protein_coding protein_coding MGP_C3HHeJ_T0095454.1 MGP_C3HHeJ_G0035318.1 mouse_genomes_project X 32339679 32341203 - Rpl39 protein_coding retained_intron MGP_C3HHeJ_T0095455.1 MGP_C3HHeJ_G0035318.1 mouse_genomes_project X 32340573 32341193 - Rpl39 protein_coding retained_intron MGP_C3HHeJ_T0016201.1 MGP_C3HHeJ_G0014305.1 mouse_genomes_project X 69522944 69527175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016394.1 MGP_C3HHeJ_G0014498.1 mouse_genomes_project X 103892495 103893368 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098217.1 MGP_C3HHeJ_G0036429.1 mouse_genomes_project X 5388455 5388564 + Gm25885 rRNA rRNA MGP_C3HHeJ_T0096705.1 MGP_C3HHeJ_G0035668.1 mouse_genomes_project X 101656018 101683240 + MGP_C3HHeJ_P0096705 Uprt protein_coding protein_coding MGP_C3HHeJ_T0016453.1 MGP_C3HHeJ_G0014557.1 mouse_genomes_project X 115014618 115016703 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097139.1 MGP_C3HHeJ_G0035811.1 mouse_genomes_project X 138014917 138024389 + Prps1 protein_coding processed_transcript MGP_C3HHeJ_T0097140.1 MGP_C3HHeJ_G0035811.1 mouse_genomes_project X 138014917 138035061 + MGP_C3HHeJ_P0097140 Prps1 protein_coding protein_coding MGP_C3HHeJ_T0016272.1 MGP_C3HHeJ_G0014376.1 mouse_genomes_project X 85062331 85062802 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096306.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74750766 74899851 - MGP_C3HHeJ_P0096306 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096307.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74750766 74899960 - MGP_C3HHeJ_P0096307 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096308.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74750766 74899965 - MGP_C3HHeJ_P0096308 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096309.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74771627 74899924 - Prrg1 protein_coding processed_transcript MGP_C3HHeJ_T0096310.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74783657 74899851 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096311.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74783674 74899965 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096312.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74786750 74899963 - MGP_C3HHeJ_P0096312 Prrg1 protein_coding protein_coding MGP_C3HHeJ_T0096313.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74827838 74899960 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096314.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74830844 74899959 - Prrg1 protein_coding retained_intron MGP_C3HHeJ_T0096315.1 MGP_C3HHeJ_G0035556.1 mouse_genomes_project X 74831310 74899921 - Prrg1 protein_coding processed_transcript MGP_C3HHeJ_T0016218.1 MGP_C3HHeJ_G0014322.1 mouse_genomes_project X 72267052 72268364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011132.1 MGP_C3HHeJ_G0009265.1 mouse_genomes_project X 149824244 149824320 + Mir3113 miRNA miRNA MGP_C3HHeJ_T0016628.1 MGP_C3HHeJ_G0014732.1 mouse_genomes_project X 153522333 153523884 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099740.1 MGP_C3HHeJ_G0037934.1 mouse_genomes_project X 2775570 2775672 + Gm22083 snRNA snRNA MGP_C3HHeJ_T0016429.1 MGP_C3HHeJ_G0014533.1 mouse_genomes_project X 110223378 110225085 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009336.1 MGP_C3HHeJ_G0007480.1 mouse_genomes_project X 112075250 112076859 + 4930555B12Rik lincRNA lincRNA MGP_C3HHeJ_T0016510.1 MGP_C3HHeJ_G0014614.1 mouse_genomes_project X 132926565 132927308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018440.1 MGP_C3HHeJ_G0015548.1 mouse_genomes_project X 131960319 131962220 - B230119M05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0096301.1 MGP_C3HHeJ_G0035552.1 mouse_genomes_project X 74378742 74459328 + MGP_C3HHeJ_P0096301 Gm5938 protein_coding protein_coding MGP_C3HHeJ_T0096302.1 MGP_C3HHeJ_G0035552.1 mouse_genomes_project X 74380135 74458395 + Gm5938 protein_coding retained_intron MGP_C3HHeJ_T0016579.1 MGP_C3HHeJ_G0014683.1 mouse_genomes_project X 142228030 142229157 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099812.1 MGP_C3HHeJ_G0038006.1 mouse_genomes_project X 161240717 161240824 - Gm23901 snRNA snRNA MGP_C3HHeJ_T0016670.1 MGP_C3HHeJ_G0014774.1 mouse_genomes_project X 161236421 161236863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018415.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102240674 102275772 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018416.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102242285 102275722 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018417.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102242294 102275718 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018418.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102244333 102275800 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018419.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102244880 102275800 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018420.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102246138 102275763 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018421.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102246750 102275719 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018422.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102247282 102275731 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018423.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102247480 102275711 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018424.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102247555 102275784 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018425.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102268521 102275780 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018426.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102273540 102275770 - 5530601H04Rik processed_transcript retained_intron MGP_C3HHeJ_T0018427.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102274787 102284660 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018428.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102280282 102281048 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018429.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102280502 102284857 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018430.1 MGP_C3HHeJ_G0015545.1 mouse_genomes_project X 102282515 102284684 - 5530601H04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0097130.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137555445 137611647 - MGP_C3HHeJ_P0097130 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097131.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137571382 137611372 - MGP_C3HHeJ_P0097131 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097132.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137576929 137611791 - MGP_C3HHeJ_P0097132 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097133.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137577529 137611659 - MGP_C3HHeJ_P0097133 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0097134.1 MGP_C3HHeJ_G0035808.1 mouse_genomes_project X 137584110 137611630 - MGP_C3HHeJ_P0097134 Nup62cl protein_coding protein_coding MGP_C3HHeJ_T0096503.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96338836 96344337 - MGP_C3HHeJ_P0096503 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096504.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96338840 96343776 - MGP_C3HHeJ_P0096504 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096505.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96338870 96343824 - MGP_C3HHeJ_P0096505 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096506.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96339217 96343781 - MGP_C3HHeJ_P0096506 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0096507.1 MGP_C3HHeJ_G0035613.1 mouse_genomes_project X 96339249 96343761 - MGP_C3HHeJ_P0096507 Pja1 protein_coding protein_coding MGP_C3HHeJ_T0097407.1 MGP_C3HHeJ_G0035869.1 mouse_genomes_project X 151300210 151450233 + MGP_C3HHeJ_P0097407 Klf8 protein_coding protein_coding MGP_C3HHeJ_T0097408.1 MGP_C3HHeJ_G0035869.1 mouse_genomes_project X 151300492 151476351 + MGP_C3HHeJ_P0097408 Klf8 protein_coding protein_coding MGP_C3HHeJ_T0097409.1 MGP_C3HHeJ_G0035869.1 mouse_genomes_project X 151437312 151476016 + MGP_C3HHeJ_P0097409 Klf8 protein_coding protein_coding MGP_C3HHeJ_T0016142.1 MGP_C3HHeJ_G0014246.1 mouse_genomes_project X 55959432 55960028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009294.1 MGP_C3HHeJ_G0007456.1 mouse_genomes_project X 48545606 48547028 - Gm28730 lincRNA lincRNA MGP_C3HHeJ_T0009295.1 MGP_C3HHeJ_G0007456.1 mouse_genomes_project X 48545614 48547012 - Gm28730 lincRNA lincRNA MGP_C3HHeJ_T0009296.1 MGP_C3HHeJ_G0007456.1 mouse_genomes_project X 48545719 48547572 - Gm28730 lincRNA lincRNA MGP_C3HHeJ_T0096692.1 MGP_C3HHeJ_G0035662.1 mouse_genomes_project X 100529648 100590670 + MGP_C3HHeJ_P0096692 Gm26992 protein_coding protein_coding MGP_C3HHeJ_T0011056.1 MGP_C3HHeJ_G0009189.1 mouse_genomes_project X 48542715 48542784 - Mir450-2 miRNA miRNA MGP_C3HHeJ_T0016096.1 MGP_C3HHeJ_G0014200.1 mouse_genomes_project X 43005855 43008325 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011691.1 MGP_C3HHeJ_G0009824.1 mouse_genomes_project X 161470521 161470777 - Gm23501 misc_RNA misc_RNA MGP_C3HHeJ_T0016481.1 MGP_C3HHeJ_G0014585.1 mouse_genomes_project X 125197015 125199800 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097243.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200399 145435381 - MGP_C3HHeJ_P0097243 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097244.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200401 145242735 - MGP_C3HHeJ_P0097244 protein_coding protein_coding MGP_C3HHeJ_T0097245.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200406 145285321 - MGP_C3HHeJ_P0097245 protein_coding protein_coding MGP_C3HHeJ_T0097246.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200413 145227773 - protein_coding retained_intron MGP_C3HHeJ_T0097247.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145200413 145285290 - MGP_C3HHeJ_P0097247 protein_coding protein_coding MGP_C3HHeJ_T0097248.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145202839 145249636 - MGP_C3HHeJ_P0097248 protein_coding protein_coding MGP_C3HHeJ_T0097249.1 MGP_C3HHeJ_G0035841.1 mouse_genomes_project X 145214287 145233078 - protein_coding processed_transcript MGP_C3HHeJ_T0016104.1 MGP_C3HHeJ_G0014208.1 mouse_genomes_project X 45793747 45794627 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096745.1 MGP_C3HHeJ_G0035677.1 mouse_genomes_project X 103236010 103242704 + MGP_C3HHeJ_P0096745 Cox7b protein_coding protein_coding MGP_C3HHeJ_T0096746.1 MGP_C3HHeJ_G0035677.1 mouse_genomes_project X 103236026 103236440 + Cox7b protein_coding processed_transcript MGP_C3HHeJ_T0096747.1 MGP_C3HHeJ_G0035677.1 mouse_genomes_project X 103239644 103242212 + Cox7b protein_coding retained_intron MGP_C3HHeJ_T0016145.1 MGP_C3HHeJ_G0014249.1 mouse_genomes_project X 56538673 56539115 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016196.1 MGP_C3HHeJ_G0014300.1 mouse_genomes_project X 66881894 66882499 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009299.1 MGP_C3HHeJ_G0007458.1 mouse_genomes_project X 56979989 57020559 + Gm14664 lincRNA lincRNA MGP_C3HHeJ_T0011027.1 MGP_C3HHeJ_G0009160.1 mouse_genomes_project X 1882308 1882376 - Mir188 miRNA miRNA MGP_C3HHeJ_T0016436.1 MGP_C3HHeJ_G0014540.1 mouse_genomes_project X 111923811 111924249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011104.1 MGP_C3HHeJ_G0009237.1 mouse_genomes_project X 100690631 100690707 - Mir421 miRNA miRNA MGP_C3HHeJ_T0005539.1 MGP_C3HHeJ_G0004657.1 mouse_genomes_project X 153858748 153859321 + Gm15156 antisense antisense MGP_C3HHeJ_T0099771.1 MGP_C3HHeJ_G0037965.1 mouse_genomes_project X 68800827 68800934 + Gm23461 snRNA snRNA MGP_C3HHeJ_T0016167.1 MGP_C3HHeJ_G0014271.1 mouse_genomes_project X 60112563 60112916 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096082.1 MGP_C3HHeJ_G0035504.1 mouse_genomes_project X 70440751 70471486 + MGP_C3HHeJ_P0096082 Tktl1 protein_coding protein_coding MGP_C3HHeJ_T0096083.1 MGP_C3HHeJ_G0035504.1 mouse_genomes_project X 70440782 70459933 + MGP_C3HHeJ_P0096083 Tktl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096374.1 MGP_C3HHeJ_G0035579.1 mouse_genomes_project X 88829667 89324752 - MGP_C3HHeJ_P0096374 Mageb18 protein_coding protein_coding MGP_C3HHeJ_T0096375.1 MGP_C3HHeJ_G0035579.1 mouse_genomes_project X 88829989 88831560 - MGP_C3HHeJ_P0096375 Mageb18 protein_coding protein_coding MGP_C3HHeJ_T0095207.1 MGP_C3HHeJ_G0035241.1 mouse_genomes_project X 4115092 4121065 - MGP_C3HHeJ_P0095207 Gm14862 protein_coding protein_coding MGP_C3HHeJ_T0011673.1 MGP_C3HHeJ_G0009806.1 mouse_genomes_project X 100725155 100725248 + Gm27987 misc_RNA misc_RNA MGP_C3HHeJ_T0095465.1 MGP_C3HHeJ_G0035325.1 mouse_genomes_project X 32479330 32490301 - MGP_C3HHeJ_P0095465 Rhox1 protein_coding protein_coding MGP_C3HHeJ_T0016181.1 MGP_C3HHeJ_G0014285.1 mouse_genomes_project X 64049900 64050203 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016121.1 MGP_C3HHeJ_G0014225.1 mouse_genomes_project X 49325459 49325753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095209.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4286457 4320405 - MGP_C3HHeJ_P0095209 Cybb protein_coding protein_coding MGP_C3HHeJ_T0095210.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4298045 4320350 - MGP_C3HHeJ_P0095210 Cybb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095211.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4300503 4302653 - Cybb protein_coding retained_intron MGP_C3HHeJ_T0095212.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4308137 4345934 - MGP_C3HHeJ_P0095212 Cybb protein_coding protein_coding MGP_C3HHeJ_T0095213.1 MGP_C3HHeJ_G0035243.1 mouse_genomes_project X 4316069 4320351 - Cybb protein_coding retained_intron MGP_C3HHeJ_T0095142.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2751880 2765469 - MGP_C3HHeJ_P0095142 Suv39h1 protein_coding protein_coding MGP_C3HHeJ_T0095143.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2752135 2765330 - Suv39h1 protein_coding retained_intron MGP_C3HHeJ_T0095144.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2752144 2764967 - MGP_C3HHeJ_P0095144 Suv39h1 protein_coding protein_coding MGP_C3HHeJ_T0095145.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2758118 2765438 - MGP_C3HHeJ_P0095145 Suv39h1 protein_coding protein_coding MGP_C3HHeJ_T0095146.1 MGP_C3HHeJ_G0035220.1 mouse_genomes_project X 2761138 2765022 - Suv39h1 protein_coding retained_intron MGP_C3HHeJ_T0011065.1 MGP_C3HHeJ_G0009198.1 mouse_genomes_project X 57095242 57095335 + Gm24396 miRNA miRNA MGP_C3HHeJ_T0011687.1 MGP_C3HHeJ_G0009820.1 mouse_genomes_project X 150950460 150950770 - Gm26035 misc_RNA misc_RNA MGP_C3HHeJ_T0102336.1 MGP_C3HHeJ_G0040299.1 mouse_genomes_project X 8135617 8135755 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102351.1 MGP_C3HHeJ_G0040314.1 mouse_genomes_project X 72728786 72729746 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016637.1 MGP_C3HHeJ_G0014741.1 mouse_genomes_project X 155794675 155795372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011024.1 MGP_C3HHeJ_G0009157.1 mouse_genomes_project X 1871940 1872032 - Mir500 miRNA miRNA MGP_C3HHeJ_T0015992.1 MGP_C3HHeJ_G0014096.1 mouse_genomes_project X 6502554 6502770 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097468.1 MGP_C3HHeJ_G0035891.1 mouse_genomes_project X 156071748 156313682 - MGP_C3HHeJ_P0097468 Cnksr2 protein_coding protein_coding MGP_C3HHeJ_T0097469.1 MGP_C3HHeJ_G0035891.1 mouse_genomes_project X 156083055 156313682 - MGP_C3HHeJ_P0097469 Cnksr2 protein_coding protein_coding MGP_C3HHeJ_T0097470.1 MGP_C3HHeJ_G0035891.1 mouse_genomes_project X 156108846 156117644 - Cnksr2 protein_coding retained_intron MGP_C3HHeJ_T0097438.1 MGP_C3HHeJ_G0035882.1 mouse_genomes_project X 153546943 153561493 - MGP_C3HHeJ_P0097438 Prdx4 protein_coding protein_coding MGP_C3HHeJ_T0097439.1 MGP_C3HHeJ_G0035882.1 mouse_genomes_project X 153551471 153563780 - MGP_C3HHeJ_P0097439 Prdx4 protein_coding protein_coding MGP_C3HHeJ_T0097440.1 MGP_C3HHeJ_G0035882.1 mouse_genomes_project X 153559817 153561500 - Prdx4 protein_coding processed_transcript MGP_C3HHeJ_T0096442.1 MGP_C3HHeJ_G0035595.1 mouse_genomes_project X 92263141 92289390 - MGP_C3HHeJ_P0096442 Amer1 protein_coding protein_coding MGP_C3HHeJ_T0101051.1 MGP_C3HHeJ_G0039245.1 mouse_genomes_project X 129753301 129753432 - Gm23768 snoRNA snoRNA MGP_C3HHeJ_T0096046.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273783 70283888 - MGP_C3HHeJ_P0096046 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096047.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273787 70283885 - MGP_C3HHeJ_P0096047 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096048.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273795 70283885 - MGP_C3HHeJ_P0096048 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096049.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70273795 70283885 - MGP_C3HHeJ_P0096049 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096050.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70274671 70283796 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096051.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70274671 70283796 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096052.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70274836 70283883 - MGP_C3HHeJ_P0096052 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096053.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275223 70278200 - MGP_C3HHeJ_P0096053 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096054.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275237 70279807 - MGP_C3HHeJ_P0096054 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096055.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275305 70283715 - MGP_C3HHeJ_P0096055 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096056.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70275305 70283715 - MGP_C3HHeJ_P0096056 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096057.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70276413 70280854 - MGP_C3HHeJ_P0096057 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096058.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70276995 70282362 - MGP_C3HHeJ_P0096058 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096059.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70280865 70282517 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096060.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70280865 70282957 - MGP_C3HHeJ_P0096060 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096061.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282052 70283039 - MGP_C3HHeJ_P0096061 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096062.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282094 70282810 - MGP_C3HHeJ_P0096062 Irak1 protein_coding protein_coding MGP_C3HHeJ_T0096063.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282103 70283697 - Irak1 protein_coding processed_transcript MGP_C3HHeJ_T0096064.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282483 70283778 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096065.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282498 70283346 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0096066.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282611 70283478 - Irak1 protein_coding processed_transcript MGP_C3HHeJ_T0096067.1 MGP_C3HHeJ_G0035500.1 mouse_genomes_project X 70282960 70283801 - Irak1 protein_coding retained_intron MGP_C3HHeJ_T0016331.1 MGP_C3HHeJ_G0014435.1 mouse_genomes_project X 93923967 93924772 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095416.1 MGP_C3HHeJ_G0035304.1 mouse_genomes_project X 31332940 31393115 + MGP_C3HHeJ_P0095416 Il13ra1 protein_coding protein_coding MGP_C3HHeJ_T0097039.1 MGP_C3HHeJ_G0035778.1 mouse_genomes_project X 133638463 133639516 + MGP_C3HHeJ_P0097039 Ngfrap1 protein_coding protein_coding MGP_C3HHeJ_T0096230.1 MGP_C3HHeJ_G0035531.1 mouse_genomes_project X 71295210 71391006 - MGP_C3HHeJ_P0096230 Gab3 protein_coding protein_coding MGP_C3HHeJ_T0096231.1 MGP_C3HHeJ_G0035531.1 mouse_genomes_project X 71295388 71390849 - MGP_C3HHeJ_P0096231 Gab3 protein_coding protein_coding MGP_C3HHeJ_T0096232.1 MGP_C3HHeJ_G0035531.1 mouse_genomes_project X 71295390 71392455 - Gab3 protein_coding processed_transcript MGP_C3HHeJ_T0102358.1 MGP_C3HHeJ_G0040321.1 mouse_genomes_project X 82776696 82777728 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097049.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134272415 134295652 + MGP_C3HHeJ_P0097049 Plp1 protein_coding protein_coding MGP_C3HHeJ_T0097050.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134272534 134293710 + MGP_C3HHeJ_P0097050 Plp1 protein_coding protein_coding MGP_C3HHeJ_T0097051.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134287373 134288804 + Plp1 protein_coding retained_intron MGP_C3HHeJ_T0097052.1 MGP_C3HHeJ_G0035784.1 mouse_genomes_project X 134289462 134290702 + Plp1 protein_coding retained_intron MGP_C3HHeJ_T0016622.1 MGP_C3HHeJ_G0014726.1 mouse_genomes_project X 153177560 153179995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016024.1 MGP_C3HHeJ_G0014128.1 mouse_genomes_project X 13963667 13964073 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095302.1 MGP_C3HHeJ_G0035271.1 mouse_genomes_project X 13154614 13155459 + MGP_C3HHeJ_P0095302 Dusp21 protein_coding protein_coding MGP_C3HHeJ_T0102371.1 MGP_C3HHeJ_G0040334.1 mouse_genomes_project X 145465223 145465551 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099797.1 MGP_C3HHeJ_G0037991.1 mouse_genomes_project X 125842632 125842740 + Gm24522 snRNA snRNA MGP_C3HHeJ_T0016136.1 MGP_C3HHeJ_G0014240.1 mouse_genomes_project X 54318184 54318601 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005544.1 MGP_C3HHeJ_G0004661.1 mouse_genomes_project X 160266876 160267431 + Gm15202 antisense antisense MGP_C3HHeJ_T0097168.1 MGP_C3HHeJ_G0035821.1 mouse_genomes_project X 139480590 139481625 - MGP_C3HHeJ_P0097168 protein_coding protein_coding MGP_C3HHeJ_T0009315.1 MGP_C3HHeJ_G0007472.1 mouse_genomes_project X 96279746 96290115 - Gm14809 lincRNA lincRNA MGP_C3HHeJ_T0095897.1 MGP_C3HHeJ_G0035468.1 mouse_genomes_project X 69016173 69033599 + MGP_C3HHeJ_P0095897 Gabrq protein_coding protein_coding MGP_C3HHeJ_T0095898.1 MGP_C3HHeJ_G0035468.1 mouse_genomes_project X 69016431 69029540 + MGP_C3HHeJ_P0095898 Gabrq protein_coding protein_coding MGP_C3HHeJ_T0009348.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150279854 150306223 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009349.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150280006 150306223 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009350.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150280006 150306223 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009351.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150280083 150306191 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009352.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150293956 150296739 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009353.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150294052 150306198 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0009354.1 MGP_C3HHeJ_G0007491.1 mouse_genomes_project X 150298524 150306198 - Kantr lincRNA lincRNA MGP_C3HHeJ_T0016306.1 MGP_C3HHeJ_G0014410.1 mouse_genomes_project X 90767257 90768024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096359.1 MGP_C3HHeJ_G0035568.1 mouse_genomes_project X 82589462 82593646 + MGP_C3HHeJ_P0096359 Nr0b1 protein_coding protein_coding MGP_C3HHeJ_T0016475.1 MGP_C3HHeJ_G0014579.1 mouse_genomes_project X 119961025 119961766 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005535.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149235498 149294064 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0005536.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149236748 149242810 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0005537.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149236748 149260696 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0005538.1 MGP_C3HHeJ_G0004656.1 mouse_genomes_project X 149262622 149291097 - A230072E10Rik antisense antisense MGP_C3HHeJ_T0097492.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 157935675 158299604 + MGP_C3HHeJ_P0097492 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097493.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 157935944 158238297 + Sh3kbp1 protein_coding retained_intron MGP_C3HHeJ_T0097494.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 157935944 158294704 + MGP_C3HHeJ_P0097494 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097495.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158007403 158182229 + MGP_C3HHeJ_P0097495 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097496.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158018690 158295702 + MGP_C3HHeJ_P0097496 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097497.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158018690 158295400 + MGP_C3HHeJ_P0097497 Sh3kbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097498.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158155489 158297199 + MGP_C3HHeJ_P0097498 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097499.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158155502 158295702 + MGP_C3HHeJ_P0097499 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097500.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158155980 158297451 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097501.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158237070 158294854 + MGP_C3HHeJ_P0097501 Sh3kbp1 protein_coding protein_coding MGP_C3HHeJ_T0097502.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158260278 158293423 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097503.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158261274 158297452 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097504.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158261493 158295702 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0097505.1 MGP_C3HHeJ_G0035896.1 mouse_genomes_project X 158261599 158294725 + Sh3kbp1 protein_coding processed_transcript MGP_C3HHeJ_T0011118.1 MGP_C3HHeJ_G0009251.1 mouse_genomes_project X 133107427 133107531 - Mir1970 miRNA miRNA MGP_C3HHeJ_T0016129.1 MGP_C3HHeJ_G0014233.1 mouse_genomes_project X 53514838 53515084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096864.1 MGP_C3HHeJ_G0035716.1 mouse_genomes_project X 112052938 112053823 + MGP_C3HHeJ_P0096864 Ube2dnl1 protein_coding protein_coding MGP_C3HHeJ_T0018394.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220334 48222365 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0018395.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220334 48222365 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0018396.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220334 48222365 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0018397.1 MGP_C3HHeJ_G0015536.1 mouse_genomes_project X 48220336 48222732 - Kis2 processed_transcript processed_transcript MGP_C3HHeJ_T0011679.1 MGP_C3HHeJ_G0009812.1 mouse_genomes_project X 129883360 129883563 + Gm22143 misc_RNA misc_RNA MGP_C3HHeJ_T0016616.1 MGP_C3HHeJ_G0014720.1 mouse_genomes_project X 151588084 151588469 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097951.1 MGP_C3HHeJ_G0036163.1 mouse_genomes_project X 46653357 46654464 - pseudogene pseudogene MGP_C3HHeJ_T0011081.1 MGP_C3HHeJ_G0009214.1 mouse_genomes_project X 62909246 62909320 - Mir465 miRNA miRNA MGP_C3HHeJ_T0097044.1 MGP_C3HHeJ_G0035782.1 mouse_genomes_project X 134180885 134191534 - MGP_C3HHeJ_P0097044 Morf4l2 protein_coding protein_coding MGP_C3HHeJ_T0097045.1 MGP_C3HHeJ_G0035782.1 mouse_genomes_project X 134182271 134190363 - MGP_C3HHeJ_P0097045 Morf4l2 protein_coding protein_coding MGP_C3HHeJ_T0097046.1 MGP_C3HHeJ_G0035782.1 mouse_genomes_project X 134185474 134191151 - Morf4l2 protein_coding processed_transcript MGP_C3HHeJ_T0016044.1 MGP_C3HHeJ_G0014148.1 mouse_genomes_project X 17578678 17579221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016671.1 MGP_C3HHeJ_G0014775.1 mouse_genomes_project X 161286129 161286529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096882.1 MGP_C3HHeJ_G0035725.1 mouse_genomes_project X 119611580 119614415 - MGP_C3HHeJ_P0096882 Nap1l3 protein_coding protein_coding MGP_C3HHeJ_T0096084.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489786 70516397 - MGP_C3HHeJ_P0096084 Flna protein_coding protein_coding MGP_C3HHeJ_T0096085.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489786 70513241 - MGP_C3HHeJ_P0096085 Flna protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096086.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489788 70513377 - MGP_C3HHeJ_P0096086 Flna protein_coding protein_coding MGP_C3HHeJ_T0096087.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70489866 70513398 - MGP_C3HHeJ_P0096087 Flna protein_coding protein_coding MGP_C3HHeJ_T0096088.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70490114 70513207 - MGP_C3HHeJ_P0096088 Flna protein_coding protein_coding MGP_C3HHeJ_T0096089.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70491135 70492805 - Flna protein_coding processed_transcript MGP_C3HHeJ_T0096090.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70491159 70493115 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096091.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70492773 70493946 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096092.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70493197 70494815 - MGP_C3HHeJ_P0096092 Flna protein_coding protein_coding MGP_C3HHeJ_T0096093.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70493562 70494294 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096094.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70494177 70495389 - MGP_C3HHeJ_P0096094 Flna protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096095.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70494411 70495125 - Flna protein_coding retained_intron MGP_C3HHeJ_T0096096.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70494705 70496896 - MGP_C3HHeJ_P0096096 Flna protein_coding protein_coding MGP_C3HHeJ_T0096097.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70497021 70502289 - Flna protein_coding processed_transcript MGP_C3HHeJ_T0096098.1 MGP_C3HHeJ_G0035505.1 mouse_genomes_project X 70502407 70504759 - Flna protein_coding processed_transcript MGP_C3HHeJ_T0016543.1 MGP_C3HHeJ_G0014647.1 mouse_genomes_project X 137441717 137443197 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095338.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15767143 15792306 + MGP_C3HHeJ_P0095338 Uba1 protein_coding protein_coding MGP_C3HHeJ_T0095339.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15767238 15779442 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0095340.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15768244 15778356 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0095341.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15772036 15792306 + MGP_C3HHeJ_P0095341 Uba1 protein_coding protein_coding MGP_C3HHeJ_T0095342.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15787215 15790327 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0095343.1 MGP_C3HHeJ_G0035282.1 mouse_genomes_project X 15789721 15791332 + Uba1 protein_coding processed_transcript MGP_C3HHeJ_T0096714.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103007048 103144837 - MGP_C3HHeJ_P0096714 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096715.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103009850 103011484 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096716.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103011183 103013233 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096717.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103027458 103035724 - MGP_C3HHeJ_P0096717 Atrx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096718.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103027484 103039250 - Atrx protein_coding processed_transcript MGP_C3HHeJ_T0096719.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103035742 103047880 - MGP_C3HHeJ_P0096719 Atrx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096720.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103047632 103057113 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096721.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103047987 103057297 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096722.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103056723 103062164 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096723.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103057076 103061879 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096724.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103061789 103087338 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096725.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103062351 103087669 - MGP_C3HHeJ_P0096725 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096726.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103066955 103101586 - MGP_C3HHeJ_P0096726 Atrx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096727.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103077089 103087379 - MGP_C3HHeJ_P0096727 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096728.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103087203 103144800 - MGP_C3HHeJ_P0096728 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096729.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103088581 103144776 - MGP_C3HHeJ_P0096729 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096730.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089033 103144804 - MGP_C3HHeJ_P0096730 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096731.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089033 103144784 - MGP_C3HHeJ_P0096731 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096732.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089313 103144801 - MGP_C3HHeJ_P0096732 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096733.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089514 103144793 - MGP_C3HHeJ_P0096733 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096734.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103089553 103144781 - MGP_C3HHeJ_P0096734 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096735.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103090438 103092457 - Atrx protein_coding retained_intron MGP_C3HHeJ_T0096736.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103090458 103144672 - MGP_C3HHeJ_P0096736 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096737.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103094024 103144066 - MGP_C3HHeJ_P0096737 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096738.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103098118 103144737 - MGP_C3HHeJ_P0096738 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096739.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103101543 103144831 - MGP_C3HHeJ_P0096739 Atrx protein_coding protein_coding MGP_C3HHeJ_T0096740.1 MGP_C3HHeJ_G0035675.1 mouse_genomes_project X 103114744 103144780 - Atrx protein_coding processed_transcript MGP_C3HHeJ_T0016419.1 MGP_C3HHeJ_G0014523.1 mouse_genomes_project X 109491446 109491718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097308.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 148983638 149030169 + MGP_C3HHeJ_P0097308 Fgd1 protein_coding protein_coding MGP_C3HHeJ_T0097309.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 148984658 149030169 + MGP_C3HHeJ_P0097309 Fgd1 protein_coding protein_coding MGP_C3HHeJ_T0097310.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 149006749 149009035 + Fgd1 protein_coding retained_intron MGP_C3HHeJ_T0097311.1 MGP_C3HHeJ_G0035849.1 mouse_genomes_project X 149026757 149027829 + Fgd1 protein_coding retained_intron MGP_C3HHeJ_T0009291.1 MGP_C3HHeJ_G0007453.1 mouse_genomes_project X 34048537 34078701 - Gm14565 lincRNA lincRNA MGP_C3HHeJ_T0095205.1 MGP_C3HHeJ_G0035239.1 mouse_genomes_project X 3958932 3960713 + MGP_C3HHeJ_P0095205 4930402K13Rik protein_coding protein_coding MGP_C3HHeJ_T0002440.1 MGP_C3HHeJ_G0002358.1 mouse_genomes_project X 37531286 37533477 - TEC TEC MGP_C3HHeJ_T0016017.1 MGP_C3HHeJ_G0014121.1 mouse_genomes_project X 11600713 11603308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015971.1 MGP_C3HHeJ_G0014075.1 mouse_genomes_project X 2554682 2555952 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101031.1 MGP_C3HHeJ_G0039225.1 mouse_genomes_project X 71409933 71410051 + Gm25520 snoRNA snoRNA MGP_C3HHeJ_T0096639.1 MGP_C3HHeJ_G0035643.1 mouse_genomes_project X 98737223 98741623 + MGP_C3HHeJ_P0096639 8030474K03Rik protein_coding protein_coding MGP_C3HHeJ_T0096640.1 MGP_C3HHeJ_G0035643.1 mouse_genomes_project X 98737253 98741625 + 8030474K03Rik protein_coding processed_transcript MGP_C3HHeJ_T0096641.1 MGP_C3HHeJ_G0035643.1 mouse_genomes_project X 98739655 98741627 + MGP_C3HHeJ_P0096641 8030474K03Rik protein_coding protein_coding MGP_C3HHeJ_T0016438.1 MGP_C3HHeJ_G0014542.1 mouse_genomes_project X 112098593 112099099 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016387.1 MGP_C3HHeJ_G0014491.1 mouse_genomes_project X 102706856 102707462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016305.1 MGP_C3HHeJ_G0014409.1 mouse_genomes_project X 90730918 90731420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095962.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70027815 70035750 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095963.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70027815 70035750 - MGP_C3HHeJ_P0095963 Idh3g protein_coding protein_coding MGP_C3HHeJ_T0095964.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70027895 70029750 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095965.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70028522 70029549 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095966.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70028888 70029665 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095967.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70028926 70035475 - Idh3g protein_coding processed_transcript MGP_C3HHeJ_T0095968.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70029273 70030560 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095969.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70029440 70031072 - Idh3g protein_coding retained_intron MGP_C3HHeJ_T0095970.1 MGP_C3HHeJ_G0035491.1 mouse_genomes_project X 70029831 70031221 - Idh3g protein_coding processed_transcript MGP_C3HHeJ_T0097402.1 MGP_C3HHeJ_G0035866.1 mouse_genomes_project X 151079446 151080856 - MGP_C3HHeJ_P0097402 Mageh1 protein_coding protein_coding MGP_C3HHeJ_T0095461.1 MGP_C3HHeJ_G0035321.1 mouse_genomes_project X 32411565 32430596 - MGP_C3HHeJ_P0095461 Akap14 protein_coding protein_coding MGP_C3HHeJ_T0015975.1 MGP_C3HHeJ_G0014079.1 mouse_genomes_project X 2727894 2728416 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097403.1 MGP_C3HHeJ_G0035867.1 mouse_genomes_project X 151172049 151186376 + MGP_C3HHeJ_P0097403 Foxr2 protein_coding protein_coding MGP_C3HHeJ_T0097404.1 MGP_C3HHeJ_G0035867.1 mouse_genomes_project X 151180427 151186376 + MGP_C3HHeJ_P0097404 Foxr2 protein_coding protein_coding MGP_C3HHeJ_T0102377.1 MGP_C3HHeJ_G0040340.1 mouse_genomes_project X 157379378 157383021 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095534.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37439796 37452776 + Xiap protein_coding processed_transcript MGP_C3HHeJ_T0095535.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37447948 37491332 + MGP_C3HHeJ_P0095535 Xiap protein_coding protein_coding MGP_C3HHeJ_T0095536.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37448536 37491332 + MGP_C3HHeJ_P0095536 Xiap protein_coding protein_coding MGP_C3HHeJ_T0095537.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37448548 37452776 + Xiap protein_coding processed_transcript MGP_C3HHeJ_T0095538.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37448893 37491332 + Xiap protein_coding processed_transcript MGP_C3HHeJ_T0095539.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37451463 37491332 + MGP_C3HHeJ_P0095539 Xiap protein_coding protein_coding MGP_C3HHeJ_T0095540.1 MGP_C3HHeJ_G0035347.1 mouse_genomes_project X 37475401 37491332 + MGP_C3HHeJ_P0095540 Xiap protein_coding protein_coding MGP_C3HHeJ_T0018386.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45986952 45996366 - processed_transcript processed_transcript MGP_C3HHeJ_T0018387.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45986952 46062159 - processed_transcript processed_transcript MGP_C3HHeJ_T0018388.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45986959 45994354 - processed_transcript processed_transcript MGP_C3HHeJ_T0018389.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45989274 46001847 - processed_transcript processed_transcript MGP_C3HHeJ_T0018390.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 45989483 45992511 - processed_transcript processed_transcript MGP_C3HHeJ_T0018391.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 46045566 46062201 - processed_transcript processed_transcript MGP_C3HHeJ_T0018392.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 46053348 46062209 - processed_transcript processed_transcript MGP_C3HHeJ_T0018393.1 MGP_C3HHeJ_G0015535.1 mouse_genomes_project X 46053348 46062219 - processed_transcript processed_transcript MGP_C3HHeJ_T0018379.1 MGP_C3HHeJ_G0015531.1 mouse_genomes_project X 7982129 7985315 + 5730405O15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018380.1 MGP_C3HHeJ_G0015531.1 mouse_genomes_project X 7982165 7985402 + 5730405O15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016504.1 MGP_C3HHeJ_G0014608.1 mouse_genomes_project X 132006894 132008929 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016006.1 MGP_C3HHeJ_G0014110.1 mouse_genomes_project X 8272966 8275227 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016355.1 MGP_C3HHeJ_G0014459.1 mouse_genomes_project X 99631873 99632467 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016398.1 MGP_C3HHeJ_G0014502.1 mouse_genomes_project X 104027233 104027451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018439.1 MGP_C3HHeJ_G0015547.1 mouse_genomes_project X 131126489 131128992 - 4930570D08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0096816.1 MGP_C3HHeJ_G0035702.1 mouse_genomes_project X 108417684 108438558 + MGP_C3HHeJ_P0096816 Cylc1 protein_coding protein_coding MGP_C3HHeJ_T0016171.1 MGP_C3HHeJ_G0014275.1 mouse_genomes_project X 61218272 61218522 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096996.1 MGP_C3HHeJ_G0035762.1 mouse_genomes_project X 132803811 132814911 + MGP_C3HHeJ_P0096996 protein_coding protein_coding MGP_C3HHeJ_T0101046.1 MGP_C3HHeJ_G0039240.1 mouse_genomes_project X 118933603 118933739 + Gm23277 snoRNA snoRNA MGP_C3HHeJ_T0009277.1 MGP_C3HHeJ_G0007444.1 mouse_genomes_project X 8198340 8199983 - 2010308F09Rik lincRNA lincRNA MGP_C3HHeJ_T0009278.1 MGP_C3HHeJ_G0007444.1 mouse_genomes_project X 8198383 8214099 - 2010308F09Rik lincRNA lincRNA MGP_C3HHeJ_T0101066.1 MGP_C3HHeJ_G0039260.1 mouse_genomes_project X 155675836 155675972 + Gm24281 snoRNA snoRNA MGP_C3HHeJ_T0095889.1 MGP_C3HHeJ_G0035464.1 mouse_genomes_project X 68406101 68407049 + MGP_C3HHeJ_P0095889 Magea4 protein_coding protein_coding MGP_C3HHeJ_T0098227.1 MGP_C3HHeJ_G0036439.1 mouse_genomes_project X 99901920 99902021 - Gm26152 rRNA rRNA MGP_C3HHeJ_T0095953.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005883 70021367 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0095954.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005883 70021367 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0095955.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005883 70021367 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0095956.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70005892 70021367 + MGP_C3HHeJ_P0095956 Plxnb3 protein_coding protein_coding MGP_C3HHeJ_T0095957.1 MGP_C3HHeJ_G0035489.1 mouse_genomes_project X 70014384 70018518 + Plxnb3 protein_coding retained_intron MGP_C3HHeJ_T0101036.1 MGP_C3HHeJ_G0039230.1 mouse_genomes_project X 89895978 89896061 + Gm24123 snoRNA snoRNA MGP_C3HHeJ_T0015979.1 MGP_C3HHeJ_G0014083.1 mouse_genomes_project X 3419452 3421937 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005519.1 MGP_C3HHeJ_G0004643.1 mouse_genomes_project X 71895420 71896128 + Gm15384 antisense antisense MGP_C3HHeJ_T0011123.1 MGP_C3HHeJ_G0009256.1 mouse_genomes_project X 141466127 141466249 - miRNA miRNA MGP_C3HHeJ_T0099769.1 MGP_C3HHeJ_G0037963.1 mouse_genomes_project X 60939559 60939665 + Gm26111 snRNA snRNA MGP_C3HHeJ_T0016474.1 MGP_C3HHeJ_G0014578.1 mouse_genomes_project X 119675725 119676028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005504.1 MGP_C3HHeJ_G0004630.1 mouse_genomes_project X 32161474 32162626 + Gm15008 antisense antisense MGP_C3HHeJ_T0015982.1 MGP_C3HHeJ_G0014086.1 mouse_genomes_project X 3842558 3843838 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097103.1 MGP_C3HHeJ_G0035801.1 mouse_genomes_project X 137084136 137205325 + MGP_C3HHeJ_P0097103 Rnf128 protein_coding protein_coding MGP_C3HHeJ_T0097104.1 MGP_C3HHeJ_G0035801.1 mouse_genomes_project X 137136398 137205332 + MGP_C3HHeJ_P0097104 Rnf128 protein_coding protein_coding MGP_C3HHeJ_T0097105.1 MGP_C3HHeJ_G0035801.1 mouse_genomes_project X 137137145 137203927 + Rnf128 protein_coding processed_transcript MGP_C3HHeJ_T0096883.1 MGP_C3HHeJ_G0035726.1 mouse_genomes_project X 123961279 123964677 - MGP_C3HHeJ_P0096883 4932411N23Rik protein_coding protein_coding MGP_C3HHeJ_T0016276.1 MGP_C3HHeJ_G0014380.1 mouse_genomes_project X 85210694 85211816 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095479.1 MGP_C3HHeJ_G0035335.1 mouse_genomes_project X 33494347 33501616 + MGP_C3HHeJ_P0095479 Zbtb33 protein_coding protein_coding MGP_C3HHeJ_T0095480.1 MGP_C3HHeJ_G0035335.1 mouse_genomes_project X 33494366 33499239 + MGP_C3HHeJ_P0095480 Zbtb33 protein_coding protein_coding MGP_C3HHeJ_T0095481.1 MGP_C3HHeJ_G0035335.1 mouse_genomes_project X 33494388 33498623 + MGP_C3HHeJ_P0095481 Zbtb33 protein_coding protein_coding MGP_C3HHeJ_T0016213.1 MGP_C3HHeJ_G0014317.1 mouse_genomes_project X 71316202 71317218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101026.1 MGP_C3HHeJ_G0039220.1 mouse_genomes_project X 66799375 66799507 + Gm22785 snoRNA snoRNA MGP_C3HHeJ_T0016265.1 MGP_C3HHeJ_G0014369.1 mouse_genomes_project X 83205299 83205609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096834.1 MGP_C3HHeJ_G0035707.1 mouse_genomes_project X 109432730 109437525 + MGP_C3HHeJ_P0096834 4933403O08Rik protein_coding protein_coding MGP_C3HHeJ_T0096835.1 MGP_C3HHeJ_G0035707.1 mouse_genomes_project X 109434145 109437525 + MGP_C3HHeJ_P0096835 4933403O08Rik protein_coding protein_coding MGP_C3HHeJ_T0096836.1 MGP_C3HHeJ_G0035707.1 mouse_genomes_project X 109434254 109437452 + MGP_C3HHeJ_P0096836 4933403O08Rik protein_coding protein_coding MGP_C3HHeJ_T0096990.1 MGP_C3HHeJ_G0035757.1 mouse_genomes_project X 132494380 132496597 - MGP_C3HHeJ_P0096990 Tceal6 protein_coding protein_coding MGP_C3HHeJ_T0097694.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167704439 167715576 - MGP_C3HHeJ_P0097694 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097695.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - Amelx protein_coding processed_transcript MGP_C3HHeJ_T0097696.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - MGP_C3HHeJ_P0097696 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097697.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - MGP_C3HHeJ_P0097697 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097698.1 MGP_C3HHeJ_G0035947.1 mouse_genomes_project X 167708347 167715576 - MGP_C3HHeJ_P0097698 Amelx protein_coding protein_coding MGP_C3HHeJ_T0097447.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155689178 155743460 - MGP_C3HHeJ_P0097447 Sms protein_coding protein_coding MGP_C3HHeJ_T0097448.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155706126 155710994 - Sms protein_coding retained_intron MGP_C3HHeJ_T0097449.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155709006 155743217 - Sms protein_coding retained_intron MGP_C3HHeJ_T0097450.1 MGP_C3HHeJ_G0035886.1 mouse_genomes_project X 155715996 155742545 - MGP_C3HHeJ_P0097450 Sms protein_coding protein_coding MGP_C3HHeJ_T0016070.1 MGP_C3HHeJ_G0014174.1 mouse_genomes_project X 36318496 36319607 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016140.1 MGP_C3HHeJ_G0014244.1 mouse_genomes_project X 55781589 55782646 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016116.1 MGP_C3HHeJ_G0014220.1 mouse_genomes_project X 48357116 48357607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011068.1 MGP_C3HHeJ_G0009201.1 mouse_genomes_project X 62841775 62841840 - Mir742 miRNA miRNA MGP_C3HHeJ_T0096656.1 MGP_C3HHeJ_G0035649.1 mouse_genomes_project X 99146346 99150800 - MGP_C3HHeJ_P0096656 Rps4x protein_coding protein_coding MGP_C3HHeJ_T0096657.1 MGP_C3HHeJ_G0035649.1 mouse_genomes_project X 99146479 99148143 - Rps4x protein_coding retained_intron MGP_C3HHeJ_T0096658.1 MGP_C3HHeJ_G0035649.1 mouse_genomes_project X 99149032 99150742 - Rps4x protein_coding retained_intron MGP_C3HHeJ_T0095044.1 MGP_C3HHeJ_G0035201.1 mouse_genomes_project X 2345630 2369640 + MGP_C3HHeJ_P0095044 Gpkow protein_coding protein_coding MGP_C3HHeJ_T0095045.1 MGP_C3HHeJ_G0035201.1 mouse_genomes_project X 2362060 2366505 + MGP_C3HHeJ_P0095045 Gpkow protein_coding protein_coding MGP_C3HHeJ_T0095046.1 MGP_C3HHeJ_G0035201.1 mouse_genomes_project X 2364408 2366694 + Gpkow protein_coding retained_intron MGP_C3HHeJ_T0016073.1 MGP_C3HHeJ_G0014177.1 mouse_genomes_project X 37118884 37120191 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095238.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5605318 5606764 + Mid1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0095239.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5605324 5608701 + MGP_C3HHeJ_P0095239 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0095240.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5607706 5610007 + MGP_C3HHeJ_P0095240 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0095241.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5607706 5610007 + MGP_C3HHeJ_P0095241 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0095242.1 MGP_C3HHeJ_G0035252.1 mouse_genomes_project X 5607784 5608701 + MGP_C3HHeJ_P0095242 Mid1ip1 protein_coding protein_coding MGP_C3HHeJ_T0099795.1 MGP_C3HHeJ_G0037989.1 mouse_genomes_project X 124438821 124438926 + Gm22139 snRNA snRNA MGP_C3HHeJ_T0098234.1 MGP_C3HHeJ_G0036446.1 mouse_genomes_project X 157741515 157741624 + Gm23806 rRNA rRNA MGP_C3HHeJ_T0096262.1 MGP_C3HHeJ_G0035536.1 mouse_genomes_project X 71722284 71739893 + MGP_C3HHeJ_P0096262 Fundc2 protein_coding protein_coding MGP_C3HHeJ_T0096263.1 MGP_C3HHeJ_G0035536.1 mouse_genomes_project X 71722306 71727852 + Fundc2 protein_coding retained_intron MGP_C3HHeJ_T0096264.1 MGP_C3HHeJ_G0035536.1 mouse_genomes_project X 71727478 71737762 + Fundc2 protein_coding processed_transcript MGP_C3HHeJ_T0097041.1 MGP_C3HHeJ_G0035780.1 mouse_genomes_project X 133816318 133842106 - MGP_C3HHeJ_P0097041 Kir3dl2 protein_coding protein_coding MGP_C3HHeJ_T0095398.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370322 18438852 - MGP_C3HHeJ_P0095398 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095399.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370330 18439754 - MGP_C3HHeJ_P0095399 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095400.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370331 18469604 - MGP_C3HHeJ_P0095400 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095401.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18370331 18419932 - MGP_C3HHeJ_P0095401 Klhl13 protein_coding protein_coding MGP_C3HHeJ_T0095402.1 MGP_C3HHeJ_G0035299.1 mouse_genomes_project X 18387463 18450346 - Klhl13 protein_coding processed_transcript MGP_C3HHeJ_T0011131.1 MGP_C3HHeJ_G0009264.1 mouse_genomes_project X 148472133 148472194 - Mir3620 miRNA miRNA MGP_C3HHeJ_T0096225.1 MGP_C3HHeJ_G0035526.1 mouse_genomes_project X 71143912 71153025 + MGP_C3HHeJ_P0096225 protein_coding protein_coding MGP_C3HHeJ_T0011044.1 MGP_C3HHeJ_G0009177.1 mouse_genomes_project X 44103258 44103377 + Gm27828 miRNA miRNA MGP_C3HHeJ_T0095141.1 MGP_C3HHeJ_G0035219.1 mouse_genomes_project X 2687914 2703705 - MGP_C3HHeJ_P0095141 Glod5 protein_coding protein_coding MGP_C3HHeJ_T0016583.1 MGP_C3HHeJ_G0014687.1 mouse_genomes_project X 143292816 143293281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095509.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36783561 36996953 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0095510.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36783795 37058659 + MGP_C3HHeJ_P0095510 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095511.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36783937 37060675 + MGP_C3HHeJ_P0095511 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095512.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784031 37058666 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0095513.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784069 37060672 + MGP_C3HHeJ_P0095513 Gria3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095514.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784115 36997408 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0095515.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36784198 37054575 + MGP_C3HHeJ_P0095515 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095516.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36785373 36858161 + MGP_C3HHeJ_P0095516 Gria3 protein_coding protein_coding MGP_C3HHeJ_T0095517.1 MGP_C3HHeJ_G0035345.1 mouse_genomes_project X 36994050 37005116 + Gria3 protein_coding retained_intron MGP_C3HHeJ_T0016585.1 MGP_C3HHeJ_G0014689.1 mouse_genomes_project X 143446252 143446710 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095549.1 MGP_C3HHeJ_G0035349.1 mouse_genomes_project X 37867508 37869342 + MGP_C3HHeJ_P0095549 Gm43337 protein_coding protein_coding MGP_C3HHeJ_T0016393.1 MGP_C3HHeJ_G0014497.1 mouse_genomes_project X 103503696 103506881 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097672.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165783550 165809413 - MGP_C3HHeJ_P0097672 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097673.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165783552 165809443 - MGP_C3HHeJ_P0097673 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097674.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165783835 165809382 - MGP_C3HHeJ_P0097674 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097675.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165786963 165809376 - MGP_C3HHeJ_P0097675 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097676.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165786977 165809395 - MGP_C3HHeJ_P0097676 Tlr7 protein_coding protein_coding MGP_C3HHeJ_T0097677.1 MGP_C3HHeJ_G0035942.1 mouse_genomes_project X 165796575 165809328 - Tlr7 protein_coding processed_transcript MGP_C3HHeJ_T0009317.1 MGP_C3HHeJ_G0007474.1 mouse_genomes_project X 100568329 100575436 - Xist lincRNA lincRNA MGP_C3HHeJ_T0009318.1 MGP_C3HHeJ_G0007474.1 mouse_genomes_project X 100569244 100592165 - Xist lincRNA lincRNA MGP_C3HHeJ_T0009319.1 MGP_C3HHeJ_G0007474.1 mouse_genomes_project X 100577582 100578534 - Xist lincRNA lincRNA MGP_C3HHeJ_T0009279.1 MGP_C3HHeJ_G0007445.1 mouse_genomes_project X 9824485 9856848 + Gm14505 lincRNA lincRNA MGP_C3HHeJ_T0095424.1 MGP_C3HHeJ_G0035307.1 mouse_genomes_project X 31636151 31637330 + MGP_C3HHeJ_P0095424 protein_coding protein_coding MGP_C3HHeJ_T0018463.1 MGP_C3HHeJ_G0015557.1 mouse_genomes_project X 168528871 168532933 - G530011O06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0096400.1 MGP_C3HHeJ_G0035587.1 mouse_genomes_project X 90945145 90978263 - MGP_C3HHeJ_P0096400 Eif2s3x protein_coding protein_coding MGP_C3HHeJ_T0096401.1 MGP_C3HHeJ_G0035587.1 mouse_genomes_project X 90964520 90978205 - MGP_C3HHeJ_P0096401 Eif2s3x protein_coding protein_coding MGP_C3HHeJ_T0096402.1 MGP_C3HHeJ_G0035587.1 mouse_genomes_project X 90967762 90978416 - Eif2s3x protein_coding processed_transcript MGP_C3HHeJ_T0102374.1 MGP_C3HHeJ_G0040337.1 mouse_genomes_project X 152313722 152314205 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096177.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70644794 70647750 - MGP_C3HHeJ_P0096177 Ubl4a protein_coding protein_coding MGP_C3HHeJ_T0096178.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70644795 70647635 - Ubl4a protein_coding processed_transcript MGP_C3HHeJ_T0096179.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646348 70647543 - MGP_C3HHeJ_P0096179 Ubl4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096180.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646386 70647573 - Ubl4a protein_coding retained_intron MGP_C3HHeJ_T0096181.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646541 70652291 - MGP_C3HHeJ_P0096181 Ubl4a protein_coding protein_coding MGP_C3HHeJ_T0096182.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646819 70647590 - Ubl4a protein_coding retained_intron MGP_C3HHeJ_T0096183.1 MGP_C3HHeJ_G0035515.1 mouse_genomes_project X 70646873 70647580 - Ubl4a protein_coding processed_transcript MGP_C3HHeJ_T0102373.1 MGP_C3HHeJ_G0040336.1 mouse_genomes_project X 151167361 151168031 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016488.1 MGP_C3HHeJ_G0014592.1 mouse_genomes_project X 127675308 127676096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016309.1 MGP_C3HHeJ_G0014413.1 mouse_genomes_project X 91092488 91093389 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016642.1 MGP_C3HHeJ_G0014746.1 mouse_genomes_project X 155915186 155915520 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011070.1 MGP_C3HHeJ_G0009203.1 mouse_genomes_project X 62848878 62848956 - Mir883b miRNA miRNA MGP_C3HHeJ_T0101309.1 MGP_C3HHeJ_G0039399.1 mouse_genomes_project X 104858854 104860073 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101310.1 MGP_C3HHeJ_G0039399.1 mouse_genomes_project X 104858863 104860018 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0005528.1 MGP_C3HHeJ_G0004651.1 mouse_genomes_project X 98738329 98744791 + antisense antisense MGP_C3HHeJ_T0005529.1 MGP_C3HHeJ_G0004651.1 mouse_genomes_project X 98739655 98741627 + antisense antisense MGP_C3HHeJ_T0096577.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98170415 98174936 - MGP_C3HHeJ_P0096577 Il2rg protein_coding protein_coding MGP_C3HHeJ_T0096578.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98170975 98174115 - MGP_C3HHeJ_P0096578 Il2rg protein_coding protein_coding MGP_C3HHeJ_T0096579.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98173346 98174871 - Il2rg protein_coding retained_intron MGP_C3HHeJ_T0096580.1 MGP_C3HHeJ_G0035633.1 mouse_genomes_project X 98173876 98174839 - Il2rg protein_coding processed_transcript MGP_C3HHeJ_T0016052.1 MGP_C3HHeJ_G0014156.1 mouse_genomes_project X 31609573 31609867 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016333.1 MGP_C3HHeJ_G0014437.1 mouse_genomes_project X 94685907 94686634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016292.1 MGP_C3HHeJ_G0014396.1 mouse_genomes_project X 88171027 88172174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095327.1 MGP_C3HHeJ_G0035279.1 mouse_genomes_project X 15648698 15661083 + MGP_C3HHeJ_P0095327 Rgn protein_coding protein_coding MGP_C3HHeJ_T0016248.1 MGP_C3HHeJ_G0014352.1 mouse_genomes_project X 77264565 77264698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016203.1 MGP_C3HHeJ_G0014307.1 mouse_genomes_project X 70266620 70267421 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095881.1 MGP_C3HHeJ_G0035461.1 mouse_genomes_project X 68153776 68157804 + MGP_C3HHeJ_P0095881 Prrg3 protein_coding protein_coding MGP_C3HHeJ_T0095882.1 MGP_C3HHeJ_G0035461.1 mouse_genomes_project X 68153777 68161249 + MGP_C3HHeJ_P0095882 Prrg3 protein_coding protein_coding MGP_C3HHeJ_T0095883.1 MGP_C3HHeJ_G0035461.1 mouse_genomes_project X 68154134 68163787 + MGP_C3HHeJ_P0095883 Prrg3 protein_coding protein_coding MGP_C3HHeJ_T0005492.1 MGP_C3HHeJ_G0004624.1 mouse_genomes_project X 2218463 2227081 + Ppp1r3fos antisense antisense MGP_C3HHeJ_T0005493.1 MGP_C3HHeJ_G0004624.1 mouse_genomes_project X 2219355 2224481 + Ppp1r3fos antisense antisense MGP_C3HHeJ_T0095446.1 MGP_C3HHeJ_G0035315.1 mouse_genomes_project X 32137759 32153594 - MGP_C3HHeJ_P0095446 Nkrf protein_coding protein_coding MGP_C3HHeJ_T0095806.1 MGP_C3HHeJ_G0035442.1 mouse_genomes_project X 63709720 63720874 - MGP_C3HHeJ_P0095806 protein_coding protein_coding MGP_C3HHeJ_T0096497.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95851597 95919194 + MGP_C3HHeJ_P0096497 Stard8 protein_coding protein_coding MGP_C3HHeJ_T0096498.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95893890 95928259 + MGP_C3HHeJ_P0096498 Stard8 protein_coding protein_coding MGP_C3HHeJ_T0096499.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95895235 95919345 + Stard8 protein_coding processed_transcript MGP_C3HHeJ_T0096500.1 MGP_C3HHeJ_G0035611.1 mouse_genomes_project X 95922134 95923971 + Stard8 protein_coding processed_transcript MGP_C3HHeJ_T0101052.1 MGP_C3HHeJ_G0039246.1 mouse_genomes_project X 132593133 132593247 - snoRNA snoRNA MGP_C3HHeJ_T0018409.1 MGP_C3HHeJ_G0015540.1 mouse_genomes_project X 69299540 69308405 + processed_transcript processed_transcript MGP_C3HHeJ_T0095018.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254016 2282093 + MGP_C3HHeJ_P0095018 Cacna1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095019.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254031 2265033 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095020.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254032 2282096 + MGP_C3HHeJ_P0095020 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095021.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254053 2266057 + MGP_C3HHeJ_P0095021 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095022.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254062 2282096 + MGP_C3HHeJ_P0095022 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095023.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2254077 2282094 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095024.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2273129 2274841 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095025.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2274093 2277146 + MGP_C3HHeJ_P0095025 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095026.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2274093 2277399 + MGP_C3HHeJ_P0095026 Cacna1f protein_coding protein_coding MGP_C3HHeJ_T0095027.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2275088 2276662 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095028.1 MGP_C3HHeJ_G0035196.1 mouse_genomes_project X 2278175 2279889 + Cacna1f protein_coding retained_intron MGP_C3HHeJ_T0095778.1 MGP_C3HHeJ_G0035426.1 mouse_genomes_project X 55907902 55939458 + MGP_C3HHeJ_P0095778 F9 protein_coding protein_coding MGP_C3HHeJ_T0016430.1 MGP_C3HHeJ_G0014534.1 mouse_genomes_project X 110409841 110411606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095329.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721509 15758962 + MGP_C3HHeJ_P0095329 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095330.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721628 15758975 + MGP_C3HHeJ_P0095330 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095331.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721789 15758975 + MGP_C3HHeJ_P0095331 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095332.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721791 15756569 + Rbm10 protein_coding processed_transcript MGP_C3HHeJ_T0095333.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721919 15758969 + MGP_C3HHeJ_P0095333 Rbm10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095334.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15721939 15758969 + MGP_C3HHeJ_P0095334 Rbm10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095335.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15724104 15758758 + MGP_C3HHeJ_P0095335 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095336.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15724104 15758758 + MGP_C3HHeJ_P0095336 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0095337.1 MGP_C3HHeJ_G0035281.1 mouse_genomes_project X 15724104 15758758 + MGP_C3HHeJ_P0095337 Rbm10 protein_coding protein_coding MGP_C3HHeJ_T0016515.1 MGP_C3HHeJ_G0014619.1 mouse_genomes_project X 133798611 133799056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016078.1 MGP_C3HHeJ_G0014182.1 mouse_genomes_project X 38282241 38282632 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099800.1 MGP_C3HHeJ_G0037994.1 mouse_genomes_project X 135900108 135900213 - Gm23958 snRNA snRNA MGP_C3HHeJ_T0016561.1 MGP_C3HHeJ_G0014665.1 mouse_genomes_project X 139635501 139635759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099808.1 MGP_C3HHeJ_G0038002.1 mouse_genomes_project X 152001511 152001611 - Gm25895 snRNA snRNA MGP_C3HHeJ_T0016303.1 MGP_C3HHeJ_G0014407.1 mouse_genomes_project X 90672516 90672787 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096678.1 MGP_C3HHeJ_G0035654.1 mouse_genomes_project X 99747297 99754276 + MGP_C3HHeJ_P0096678 Dmrtc1c1 protein_coding protein_coding MGP_C3HHeJ_T0096679.1 MGP_C3HHeJ_G0035654.1 mouse_genomes_project X 99748557 99750251 + MGP_C3HHeJ_P0096679 Dmrtc1c1 protein_coding protein_coding MGP_C3HHeJ_T0095252.1 MGP_C3HHeJ_G0035255.1 mouse_genomes_project X 7580892 7600513 - MGP_C3HHeJ_P0095252 1810030O07Rik protein_coding protein_coding MGP_C3HHeJ_T0018459.1 MGP_C3HHeJ_G0015554.1 mouse_genomes_project X 151080909 151123694 + 9530051G07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016649.1 MGP_C3HHeJ_G0014753.1 mouse_genomes_project X 157130655 157131540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016669.1 MGP_C3HHeJ_G0014773.1 mouse_genomes_project X 161235466 161236152 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097596.1 MGP_C3HHeJ_G0035920.1 mouse_genomes_project X 162494382 162499790 - MGP_C3HHeJ_P0097596 protein_coding protein_coding MGP_C3HHeJ_T0097597.1 MGP_C3HHeJ_G0035920.1 mouse_genomes_project X 162494382 162499819 - MGP_C3HHeJ_P0097597 protein_coding protein_coding MGP_C3HHeJ_T0097598.1 MGP_C3HHeJ_G0035920.1 mouse_genomes_project X 162495555 162500162 - MGP_C3HHeJ_P0097598 protein_coding protein_coding MGP_C3HHeJ_T0097006.1 MGP_C3HHeJ_G0035766.1 mouse_genomes_project X 133031578 133047641 - MGP_C3HHeJ_P0097006 protein_coding protein_coding MGP_C3HHeJ_T0097007.1 MGP_C3HHeJ_G0035766.1 mouse_genomes_project X 133031578 133041688 - MGP_C3HHeJ_P0097007 protein_coding protein_coding MGP_C3HHeJ_T0016365.1 MGP_C3HHeJ_G0014469.1 mouse_genomes_project X 100598517 100598918 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095732.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52721580 52822541 + MGP_C3HHeJ_P0095732 protein_coding protein_coding MGP_C3HHeJ_T0095733.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52723861 52822573 + MGP_C3HHeJ_P0095733 protein_coding protein_coding MGP_C3HHeJ_T0095734.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52738839 52844611 + MGP_C3HHeJ_P0095734 protein_coding protein_coding MGP_C3HHeJ_T0095735.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52757151 52757682 + MGP_C3HHeJ_P0095735 protein_coding protein_coding MGP_C3HHeJ_T0095736.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52806979 52822556 + MGP_C3HHeJ_P0095736 protein_coding protein_coding MGP_C3HHeJ_T0095737.1 MGP_C3HHeJ_G0035414.1 mouse_genomes_project X 52810465 52822563 + MGP_C3HHeJ_P0095737 protein_coding protein_coding MGP_C3HHeJ_T0016456.1 MGP_C3HHeJ_G0014560.1 mouse_genomes_project X 115035617 115037358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101320.1 MGP_C3HHeJ_G0039407.1 mouse_genomes_project X 167897374 167899690 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016666.1 MGP_C3HHeJ_G0014770.1 mouse_genomes_project X 161065091 161065546 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095541.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532615 37664991 + MGP_C3HHeJ_P0095541 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095542.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532707 37664981 + MGP_C3HHeJ_P0095542 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095543.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532836 37599656 + Stag2 protein_coding retained_intron MGP_C3HHeJ_T0095544.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37532978 37593124 + MGP_C3HHeJ_P0095544 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095545.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37533449 37598395 + Stag2 protein_coding processed_transcript MGP_C3HHeJ_T0095546.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37534683 37664991 + MGP_C3HHeJ_P0095546 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095547.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37534996 37593127 + MGP_C3HHeJ_P0095547 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0095548.1 MGP_C3HHeJ_G0035348.1 mouse_genomes_project X 37536162 37608005 + MGP_C3HHeJ_P0095548 Stag2 protein_coding protein_coding MGP_C3HHeJ_T0005514.1 MGP_C3HHeJ_G0004639.1 mouse_genomes_project X 65412334 65417008 - Gm14705 antisense antisense MGP_C3HHeJ_T0005515.1 MGP_C3HHeJ_G0004639.1 mouse_genomes_project X 65413696 65416080 - Gm14705 antisense antisense MGP_C3HHeJ_T0005542.1 MGP_C3HHeJ_G0004659.1 mouse_genomes_project X 158820628 158832517 - Gm15241 antisense antisense MGP_C3HHeJ_T0098255.1 MGP_C3HHeJ_G0036467.1 mouse_genomes_project X 78475743 78475962 + Gm26174 ribozyme ribozyme MGP_C3HHeJ_T0101034.1 MGP_C3HHeJ_G0039228.1 mouse_genomes_project X 74858655 74858789 - Gm22843 snoRNA snoRNA MGP_C3HHeJ_T0095563.1 MGP_C3HHeJ_G0035352.1 mouse_genomes_project X 38984774 38987147 + MGP_C3HHeJ_P0095563 Gm362 protein_coding protein_coding MGP_C3HHeJ_T0016391.1 MGP_C3HHeJ_G0014495.1 mouse_genomes_project X 102942408 102942795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011035.1 MGP_C3HHeJ_G0009168.1 mouse_genomes_project X 15937306 15937384 - Gm24824 miRNA miRNA MGP_C3HHeJ_T0009284.1 MGP_C3HHeJ_G0007448.1 mouse_genomes_project X 16331265 16349212 - 4930453H23Rik lincRNA lincRNA MGP_C3HHeJ_T0009285.1 MGP_C3HHeJ_G0007448.1 mouse_genomes_project X 16331742 16332000 - 4930453H23Rik lincRNA lincRNA MGP_C3HHeJ_T0009286.1 MGP_C3HHeJ_G0007448.1 mouse_genomes_project X 16345956 16349111 - 4930453H23Rik lincRNA lincRNA MGP_C3HHeJ_T0011120.1 MGP_C3HHeJ_G0009253.1 mouse_genomes_project X 137862476 137862541 + Mir3475 miRNA miRNA MGP_C3HHeJ_T0101313.1 MGP_C3HHeJ_G0039402.1 mouse_genomes_project X 134250593 134250915 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096683.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957358 99961015 - MGP_C3HHeJ_P0096683 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0096684.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957364 99960704 - MGP_C3HHeJ_P0096684 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0096685.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957364 99960615 - MGP_C3HHeJ_P0096685 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0096686.1 MGP_C3HHeJ_G0035656.1 mouse_genomes_project X 99957954 99962512 - MGP_C3HHeJ_P0096686 Dmrtc1a protein_coding protein_coding MGP_C3HHeJ_T0016662.1 MGP_C3HHeJ_G0014766.1 mouse_genomes_project X 159612015 159612619 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011080.1 MGP_C3HHeJ_G0009213.1 mouse_genomes_project X 62906592 62906674 - Mir465b-2 miRNA miRNA MGP_C3HHeJ_T0016065.1 MGP_C3HHeJ_G0014169.1 mouse_genomes_project X 35382362 35382791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016352.1 MGP_C3HHeJ_G0014456.1 mouse_genomes_project X 99139599 99140063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011084.1 MGP_C3HHeJ_G0009217.1 mouse_genomes_project X 64053020 64053095 - Mir509 miRNA miRNA MGP_C3HHeJ_T0097451.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155789207 155822734 - Mbtps2 protein_coding processed_transcript MGP_C3HHeJ_T0097452.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155801842 155852234 - MGP_C3HHeJ_P0097452 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0097453.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155819674 155852169 - MGP_C3HHeJ_P0097453 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0097454.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155819675 155852169 - MGP_C3HHeJ_P0097454 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0097456.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155822794 155833547 - Mbtps2 protein_coding processed_transcript MGP_C3HHeJ_T0097457.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155824889 155852170 - Mbtps2 protein_coding retained_intron MGP_C3HHeJ_T0097458.1 MGP_C3HHeJ_G0035887.1 mouse_genomes_project X 155826618 155852198 - MGP_C3HHeJ_P0097458 Mbtps2 protein_coding protein_coding MGP_C3HHeJ_T0099755.1 MGP_C3HHeJ_G0037949.1 mouse_genomes_project X 32313663 32313772 - Gm26099 snRNA snRNA MGP_C3HHeJ_T0009342.1 MGP_C3HHeJ_G0007486.1 mouse_genomes_project X 138354851 138374738 + Eif2c5 lincRNA lincRNA MGP_C3HHeJ_T0102344.1 MGP_C3HHeJ_G0040307.1 mouse_genomes_project X 51653387 51662564 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016565.1 MGP_C3HHeJ_G0014669.1 mouse_genomes_project X 140022847 140023060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016141.1 MGP_C3HHeJ_G0014245.1 mouse_genomes_project X 55953544 55954663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016440.1 MGP_C3HHeJ_G0014544.1 mouse_genomes_project X 112586771 112587401 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011048.1 MGP_C3HHeJ_G0009181.1 mouse_genomes_project X 48219464 48219539 - Mir363 miRNA miRNA MGP_C3HHeJ_T0016545.1 MGP_C3HHeJ_G0014649.1 mouse_genomes_project X 138003327 138004156 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016383.1 MGP_C3HHeJ_G0014487.1 mouse_genomes_project X 102236063 102236844 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096279.1 MGP_C3HHeJ_G0035540.1 mouse_genomes_project X 71863132 71872904 + MGP_C3HHeJ_P0096279 Vbp1 protein_coding protein_coding MGP_C3HHeJ_T0096280.1 MGP_C3HHeJ_G0035540.1 mouse_genomes_project X 71863132 71883785 + MGP_C3HHeJ_P0096280 Vbp1 protein_coding protein_coding MGP_C3HHeJ_T0096281.1 MGP_C3HHeJ_G0035540.1 mouse_genomes_project X 71863150 71870612 + Vbp1 protein_coding retained_intron MGP_C3HHeJ_T0016439.1 MGP_C3HHeJ_G0014543.1 mouse_genomes_project X 112421542 112424491 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096316.1 MGP_C3HHeJ_G0035557.1 mouse_genomes_project X 75026237 75027876 + MGP_C3HHeJ_P0096316 Fam47c protein_coding protein_coding MGP_C3HHeJ_T0096959.1 MGP_C3HHeJ_G0035749.1 mouse_genomes_project X 131865726 131871535 + MGP_C3HHeJ_P0096959 protein_coding protein_coding MGP_C3HHeJ_T0096426.1 MGP_C3HHeJ_G0035593.1 mouse_genomes_project X 91851340 91856152 - MGP_C3HHeJ_P0096426 Spin4 protein_coding protein_coding MGP_C3HHeJ_T0016032.1 MGP_C3HHeJ_G0014136.1 mouse_genomes_project X 15460677 15461749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016539.1 MGP_C3HHeJ_G0014643.1 mouse_genomes_project X 136875532 136876206 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096868.1 MGP_C3HHeJ_G0035720.1 mouse_genomes_project X 115590162 115591223 + MGP_C3HHeJ_P0096868 protein_coding protein_coding MGP_C3HHeJ_T0016287.1 MGP_C3HHeJ_G0014391.1 mouse_genomes_project X 87835246 87838123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016146.1 MGP_C3HHeJ_G0014250.1 mouse_genomes_project X 56630282 56631076 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095981.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70108638 70125321 - MGP_C3HHeJ_P0095981 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095982.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70108815 70136617 - MGP_C3HHeJ_P0095982 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095983.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70109524 70125220 - MGP_C3HHeJ_P0095983 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095984.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70109751 70111247 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095985.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70109857 70111615 - MGP_C3HHeJ_P0095985 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095986.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70111277 70112517 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095987.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70111531 70112267 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095988.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70112334 70113486 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095989.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70113925 70115008 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095990.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70114278 70115976 - MGP_C3HHeJ_P0095990 L1cam protein_coding protein_coding MGP_C3HHeJ_T0095991.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70118565 70136578 - L1cam protein_coding retained_intron MGP_C3HHeJ_T0095992.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70121102 70152050 - L1cam protein_coding processed_transcript MGP_C3HHeJ_T0095993.1 MGP_C3HHeJ_G0035494.1 mouse_genomes_project X 70121179 70125698 - MGP_C3HHeJ_P0095993 L1cam protein_coding protein_coding MGP_C3HHeJ_T0097033.1 MGP_C3HHeJ_G0035775.1 mouse_genomes_project X 133570044 133570655 - MGP_C3HHeJ_P0097033 Bex1 protein_coding protein_coding MGP_C3HHeJ_T0097034.1 MGP_C3HHeJ_G0035775.1 mouse_genomes_project X 133570615 133571034 - Bex1 protein_coding retained_intron MGP_C3HHeJ_T0095203.1 MGP_C3HHeJ_G0035237.1 mouse_genomes_project X 3936828 3937486 + MGP_C3HHeJ_P0095203 protein_coding protein_coding MGP_C3HHeJ_T0101069.1 MGP_C3HHeJ_G0039263.1 mouse_genomes_project X 161137455 161137574 + Gm23786 snoRNA snoRNA MGP_C3HHeJ_T0016546.1 MGP_C3HHeJ_G0014650.1 mouse_genomes_project X 138194383 138194837 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096694.1 MGP_C3HHeJ_G0035664.1 mouse_genomes_project X 100831006 100957231 - MGP_C3HHeJ_P0096694 Slc16a2 protein_coding protein_coding MGP_C3HHeJ_T0096695.1 MGP_C3HHeJ_G0035664.1 mouse_genomes_project X 100833460 100840064 - Slc16a2 protein_coding retained_intron MGP_C3HHeJ_T0096696.1 MGP_C3HHeJ_G0035664.1 mouse_genomes_project X 100839993 100869329 - Slc16a2 protein_coding processed_transcript MGP_C3HHeJ_T0016221.1 MGP_C3HHeJ_G0014325.1 mouse_genomes_project X 72738987 72739291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009331.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102554453 102611562 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0009332.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102556531 102611562 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0009333.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102586198 102611540 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0009334.1 MGP_C3HHeJ_G0007478.1 mouse_genomes_project X 102588866 102607700 - 5330434G04Rik lincRNA lincRNA MGP_C3HHeJ_T0095391.1 MGP_C3HHeJ_G0035294.1 mouse_genomes_project X 16231117 16236490 + MGP_C3HHeJ_P0095391 Ssxa1 protein_coding protein_coding MGP_C3HHeJ_T0095392.1 MGP_C3HHeJ_G0035294.1 mouse_genomes_project X 16233669 16236490 + MGP_C3HHeJ_P0095392 Ssxa1 protein_coding protein_coding MGP_C3HHeJ_T0095701.1 MGP_C3HHeJ_G0035403.1 mouse_genomes_project X 49326671 49329018 - MGP_C3HHeJ_P0095701 Zfp36l3 protein_coding protein_coding MGP_C3HHeJ_T0016340.1 MGP_C3HHeJ_G0014444.1 mouse_genomes_project X 96678129 96679322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011121.1 MGP_C3HHeJ_G0009254.1 mouse_genomes_project X 140356094 140356192 + Mir652 miRNA miRNA MGP_C3HHeJ_T0016409.1 MGP_C3HHeJ_G0014513.1 mouse_genomes_project X 106302450 106303262 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009287.1 MGP_C3HHeJ_G0007449.1 mouse_genomes_project X 16435116 16464271 - Gm6938 lincRNA lincRNA MGP_C3HHeJ_T0101030.1 MGP_C3HHeJ_G0039224.1 mouse_genomes_project X 70915897 70916032 + Gm26417 snoRNA snoRNA MGP_C3HHeJ_T0011685.1 MGP_C3HHeJ_G0009818.1 mouse_genomes_project X 138213605 138213907 - Gm22025 misc_RNA misc_RNA MGP_C3HHeJ_T0016342.1 MGP_C3HHeJ_G0014446.1 mouse_genomes_project X 97214170 97215308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099757.1 MGP_C3HHeJ_G0037951.1 mouse_genomes_project X 38644371 38644561 + Gm24763 snRNA snRNA MGP_C3HHeJ_T0102369.1 MGP_C3HHeJ_G0040332.1 mouse_genomes_project X 134609750 134610584 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009343.1 MGP_C3HHeJ_G0007487.1 mouse_genomes_project X 141788397 141800975 + lincRNA lincRNA MGP_C3HHeJ_T0096808.1 MGP_C3HHeJ_G0035697.1 mouse_genomes_project X 106305501 106314341 - MGP_C3HHeJ_P0096808 Hmgn5 protein_coding protein_coding MGP_C3HHeJ_T0097043.1 MGP_C3HHeJ_G0035781.1 mouse_genomes_project X 134155847 134159344 + MGP_C3HHeJ_P0097043 Tceal1 protein_coding protein_coding MGP_C3HHeJ_T0009290.1 MGP_C3HHeJ_G0007452.1 mouse_genomes_project X 33808907 33815058 + Gm7598 lincRNA lincRNA MGP_C3HHeJ_T0096521.1 MGP_C3HHeJ_G0035616.1 mouse_genomes_project X 97290158 97299902 - MGP_C3HHeJ_P0096521 Awat2 protein_coding protein_coding MGP_C3HHeJ_T0011135.1 MGP_C3HHeJ_G0009268.1 mouse_genomes_project X 161266537 161266615 - Mir3473a miRNA miRNA MGP_C3HHeJ_T0099785.1 MGP_C3HHeJ_G0037979.1 mouse_genomes_project X 103029271 103029454 + Gm26020 snRNA snRNA MGP_C3HHeJ_T0096925.1 MGP_C3HHeJ_G0035740.1 mouse_genomes_project X 131423280 131443221 + MGP_C3HHeJ_P0096925 Arl13a protein_coding protein_coding MGP_C3HHeJ_T0016571.1 MGP_C3HHeJ_G0014675.1 mouse_genomes_project X 141778384 141784174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016416.1 MGP_C3HHeJ_G0014520.1 mouse_genomes_project X 109012893 109013538 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097060.1 MGP_C3HHeJ_G0035788.1 mouse_genomes_project X 134448215 134466979 - MGP_C3HHeJ_P0097060 protein_coding protein_coding MGP_C3HHeJ_T0097664.1 MGP_C3HHeJ_G0035940.1 mouse_genomes_project X 165678485 165680707 - MGP_C3HHeJ_P0097664 Tmsb4x protein_coding protein_coding MGP_C3HHeJ_T0097665.1 MGP_C3HHeJ_G0035940.1 mouse_genomes_project X 165678487 165680541 - MGP_C3HHeJ_P0097665 Tmsb4x protein_coding protein_coding MGP_C3HHeJ_T0097666.1 MGP_C3HHeJ_G0035940.1 mouse_genomes_project X 165678684 165680219 - MGP_C3HHeJ_P0097666 Tmsb4x protein_coding protein_coding MGP_C3HHeJ_T0009300.1 MGP_C3HHeJ_G0007459.1 mouse_genomes_project X 58502508 58508053 - 1700019B21Rik lincRNA lincRNA MGP_C3HHeJ_T0009301.1 MGP_C3HHeJ_G0007459.1 mouse_genomes_project X 58502508 58520272 - 1700019B21Rik lincRNA lincRNA MGP_C3HHeJ_T0016048.1 MGP_C3HHeJ_G0014152.1 mouse_genomes_project X 30990323 30991556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099767.1 MGP_C3HHeJ_G0037961.1 mouse_genomes_project X 56169925 56170032 + Gm22287 snRNA snRNA MGP_C3HHeJ_T0016010.1 MGP_C3HHeJ_G0014114.1 mouse_genomes_project X 9267836 9268702 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101023.1 MGP_C3HHeJ_G0039217.1 mouse_genomes_project X 63631905 63632014 - Gm26276 snoRNA snoRNA MGP_C3HHeJ_T0099798.1 MGP_C3HHeJ_G0037992.1 mouse_genomes_project X 131753940 131754047 + Gm23124 snRNA snRNA MGP_C3HHeJ_T0097536.1 MGP_C3HHeJ_G0035904.1 mouse_genomes_project X 159237993 159242930 - MGP_C3HHeJ_P0097536 Gja6 protein_coding protein_coding MGP_C3HHeJ_T0016195.1 MGP_C3HHeJ_G0014299.1 mouse_genomes_project X 66730174 66730550 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095779.1 MGP_C3HHeJ_G0035427.1 mouse_genomes_project X 55964382 56088643 - MGP_C3HHeJ_P0095779 Mcf2 protein_coding protein_coding MGP_C3HHeJ_T0095780.1 MGP_C3HHeJ_G0035427.1 mouse_genomes_project X 55964382 56057724 - MGP_C3HHeJ_P0095780 Mcf2 protein_coding protein_coding MGP_C3HHeJ_T0095781.1 MGP_C3HHeJ_G0035427.1 mouse_genomes_project X 55964385 56057667 - MGP_C3HHeJ_P0095781 Mcf2 protein_coding protein_coding MGP_C3HHeJ_T0016064.1 MGP_C3HHeJ_G0014168.1 mouse_genomes_project X 35169177 35169747 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095029.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2285370 2300049 + MGP_C3HHeJ_P0095029 Syp protein_coding protein_coding MGP_C3HHeJ_T0095030.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2285537 2294171 + Syp protein_coding retained_intron MGP_C3HHeJ_T0095031.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2285621 2291096 + MGP_C3HHeJ_P0095031 Syp protein_coding protein_coding MGP_C3HHeJ_T0095032.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2286204 2291085 + Syp protein_coding processed_transcript MGP_C3HHeJ_T0095033.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2286660 2291044 + Syp protein_coding retained_intron MGP_C3HHeJ_T0095034.1 MGP_C3HHeJ_G0035197.1 mouse_genomes_project X 2290710 2291835 + Syp protein_coding retained_intron MGP_C3HHeJ_T0096803.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106027303 106135979 - MGP_C3HHeJ_P0096803 Brwd3 protein_coding protein_coding MGP_C3HHeJ_T0096804.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106032854 106136003 - MGP_C3HHeJ_P0096804 Brwd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096805.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106032854 106136003 - MGP_C3HHeJ_P0096805 Brwd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096806.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106102131 106135971 - Brwd3 protein_coding retained_intron MGP_C3HHeJ_T0096807.1 MGP_C3HHeJ_G0035696.1 mouse_genomes_project X 106122459 106135977 - MGP_C3HHeJ_P0096807 Brwd3 protein_coding protein_coding MGP_C3HHeJ_T0097537.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159458807 159599714 + MGP_C3HHeJ_P0097537 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097538.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159478617 159599700 + MGP_C3HHeJ_P0097538 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097539.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159503988 159599766 + MGP_C3HHeJ_P0097539 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097540.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159504010 159601010 + MGP_C3HHeJ_P0097540 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097541.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159504010 159601027 + MGP_C3HHeJ_P0097541 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097542.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159504298 159597608 + MGP_C3HHeJ_P0097542 Scml2 protein_coding protein_coding MGP_C3HHeJ_T0097543.1 MGP_C3HHeJ_G0035905.1 mouse_genomes_project X 159573730 159579022 + Scml2 protein_coding processed_transcript MGP_C3HHeJ_T0015968.1 MGP_C3HHeJ_G0014072.1 mouse_genomes_project X 2192078 2192373 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097700.1 MGP_C3HHeJ_G0035948.1 mouse_genomes_project X 167781907 167849050 - MGP_C3HHeJ_P0097700 Hccs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097701.1 MGP_C3HHeJ_G0035948.1 mouse_genomes_project X 167840207 167848958 - MGP_C3HHeJ_P0097701 Hccs protein_coding protein_coding MGP_C3HHeJ_T0097702.1 MGP_C3HHeJ_G0035948.1 mouse_genomes_project X 167840207 167848972 - MGP_C3HHeJ_P0097702 Hccs protein_coding protein_coding MGP_C3HHeJ_T0016056.1 MGP_C3HHeJ_G0014160.1 mouse_genomes_project X 33729529 33730201 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016553.1 MGP_C3HHeJ_G0014657.1 mouse_genomes_project X 139279114 139279414 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096691.1 MGP_C3HHeJ_G0035661.1 mouse_genomes_project X 100521546 100532219 + MGP_C3HHeJ_P0096691 Tsx protein_coding protein_coding MGP_C3HHeJ_T0016263.1 MGP_C3HHeJ_G0014367.1 mouse_genomes_project X 82198914 82199173 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016163.1 MGP_C3HHeJ_G0014267.1 mouse_genomes_project X 58877027 58877249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016454.1 MGP_C3HHeJ_G0014558.1 mouse_genomes_project X 115033951 115034396 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011082.1 MGP_C3HHeJ_G0009215.1 mouse_genomes_project X 64031031 64031097 - Mir201 miRNA miRNA MGP_C3HHeJ_T0096842.1 MGP_C3HHeJ_G0035710.1 mouse_genomes_project X 109685541 109743814 + MGP_C3HHeJ_P0096842 2010106E10Rik protein_coding protein_coding MGP_C3HHeJ_T0096843.1 MGP_C3HHeJ_G0035710.1 mouse_genomes_project X 109685541 109743824 + MGP_C3HHeJ_P0096843 2010106E10Rik protein_coding protein_coding MGP_C3HHeJ_T0101495.1 MGP_C3HHeJ_G0039487.1 mouse_genomes_project X 148739760 148785114 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101496.1 MGP_C3HHeJ_G0039487.1 mouse_genomes_project X 148778139 148780363 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101497.1 MGP_C3HHeJ_G0039487.1 mouse_genomes_project X 148781752 148785227 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0096788.1 MGP_C3HHeJ_G0035690.1 mouse_genomes_project X 104707332 104714360 - MGP_C3HHeJ_P0096788 Itm2a protein_coding protein_coding MGP_C3HHeJ_T0016486.1 MGP_C3HHeJ_G0014590.1 mouse_genomes_project X 127548459 127549719 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095196.1 MGP_C3HHeJ_G0035230.1 mouse_genomes_project X 3068917 3402251 + MGP_C3HHeJ_P0095196 protein_coding protein_coding MGP_C3HHeJ_T0016225.1 MGP_C3HHeJ_G0014329.1 mouse_genomes_project X 73318494 73318933 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002447.1 MGP_C3HHeJ_G0002365.1 mouse_genomes_project X 150276182 150277659 - TEC TEC MGP_C3HHeJ_T0095930.1 MGP_C3HHeJ_G0035483.1 mouse_genomes_project X 69738190 69807030 + MGP_C3HHeJ_P0095930 Atp2b3 protein_coding protein_coding MGP_C3HHeJ_T0095931.1 MGP_C3HHeJ_G0035483.1 mouse_genomes_project X 69738190 69794237 + MGP_C3HHeJ_P0095931 Atp2b3 protein_coding protein_coding MGP_C3HHeJ_T0095932.1 MGP_C3HHeJ_G0035483.1 mouse_genomes_project X 69738190 69807030 + MGP_C3HHeJ_P0095932 Atp2b3 protein_coding protein_coding MGP_C3HHeJ_T0101021.1 MGP_C3HHeJ_G0039215.1 mouse_genomes_project X 47297986 47298103 + Gm22539 snoRNA snoRNA MGP_C3HHeJ_T0016491.1 MGP_C3HHeJ_G0014595.1 mouse_genomes_project X 128345077 128346387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097720.1 MGP_C3HHeJ_G0035951.1 mouse_genomes_project X 168532391 168532700 - MGP_C3HHeJ_P0097720 Gm21860 protein_coding protein_coding MGP_C3HHeJ_T0098303.1 MGP_C3HHeJ_G0036515.1 mouse_genomes_project X 31046637 31046912 + Gm25624 scaRNA scaRNA MGP_C3HHeJ_T0096272.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760061 71803717 + MGP_C3HHeJ_P0096272 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096273.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760130 71801734 + MGP_C3HHeJ_P0096273 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096274.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760133 71800481 + Brcc3 protein_coding retained_intron MGP_C3HHeJ_T0096275.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760143 71801457 + MGP_C3HHeJ_P0096275 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096276.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760149 71786437 + MGP_C3HHeJ_P0096276 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096277.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71760740 71783921 + MGP_C3HHeJ_P0096277 Brcc3 protein_coding protein_coding MGP_C3HHeJ_T0096278.1 MGP_C3HHeJ_G0035539.1 mouse_genomes_project X 71782423 71800973 + Brcc3 protein_coding retained_intron MGP_C3HHeJ_T0096372.1 MGP_C3HHeJ_G0035577.1 mouse_genomes_project X 88621349 88622384 - MGP_C3HHeJ_P0096372 protein_coding protein_coding MGP_C3HHeJ_T0011074.1 MGP_C3HHeJ_G0009207.1 mouse_genomes_project X 62863545 62863623 - Mir880 miRNA miRNA MGP_C3HHeJ_T0016552.1 MGP_C3HHeJ_G0014656.1 mouse_genomes_project X 139224027 139224537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016412.1 MGP_C3HHeJ_G0014516.1 mouse_genomes_project X 107704298 107706704 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096265.1 MGP_C3HHeJ_G0035537.1 mouse_genomes_project X 71748279 71759999 - MGP_C3HHeJ_P0096265 Cmc4 protein_coding protein_coding MGP_C3HHeJ_T0096266.1 MGP_C3HHeJ_G0035537.1 mouse_genomes_project X 71748459 71760018 - MGP_C3HHeJ_P0096266 Cmc4 protein_coding protein_coding MGP_C3HHeJ_T0096267.1 MGP_C3HHeJ_G0035537.1 mouse_genomes_project X 71748503 71753348 - MGP_C3HHeJ_P0096267 Cmc4 protein_coding protein_coding MGP_C3HHeJ_T0016517.1 MGP_C3HHeJ_G0014621.1 mouse_genomes_project X 133931329 133932409 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097003.1 MGP_C3HHeJ_G0035764.1 mouse_genomes_project X 132923573 132937684 - MGP_C3HHeJ_P0097003 Prame protein_coding protein_coding MGP_C3HHeJ_T0097004.1 MGP_C3HHeJ_G0035764.1 mouse_genomes_project X 132923715 132926377 - MGP_C3HHeJ_P0097004 Prame protein_coding protein_coding MGP_C3HHeJ_T0016682.1 MGP_C3HHeJ_G0014786.1 mouse_genomes_project X 164504443 164506376 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099748.1 MGP_C3HHeJ_G0037942.1 mouse_genomes_project X 14814757 14814864 - Gm23678 snRNA snRNA MGP_C3HHeJ_T0018460.1 MGP_C3HHeJ_G0015555.1 mouse_genomes_project X 161123965 161125501 - Gm15201 processed_transcript processed_transcript MGP_C3HHeJ_T0097636.1 MGP_C3HHeJ_G0035931.1 mouse_genomes_project X 163443969 163445028 - MGP_C3HHeJ_P0097636 Gm17604 protein_coding protein_coding MGP_C3HHeJ_T0016069.1 MGP_C3HHeJ_G0014173.1 mouse_genomes_project X 36082103 36082382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011108.1 MGP_C3HHeJ_G0009241.1 mouse_genomes_project X 101270577 101270677 - Mir672 miRNA miRNA MGP_C3HHeJ_T0016250.1 MGP_C3HHeJ_G0014354.1 mouse_genomes_project X 78687813 78688099 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096373.1 MGP_C3HHeJ_G0035578.1 mouse_genomes_project X 88714137 88715044 - MGP_C3HHeJ_P0096373 Mageb2 protein_coding protein_coding MGP_C3HHeJ_T0099803.1 MGP_C3HHeJ_G0037997.1 mouse_genomes_project X 143360694 143360792 - Gm27659 snRNA snRNA MGP_C3HHeJ_T0095730.1 MGP_C3HHeJ_G0035413.1 mouse_genomes_project X 52640469 52665120 - MGP_C3HHeJ_P0095730 Mtap7d3 protein_coding protein_coding MGP_C3HHeJ_T0095731.1 MGP_C3HHeJ_G0035413.1 mouse_genomes_project X 52652473 52665108 - MGP_C3HHeJ_P0095731 Mtap7d3 protein_coding protein_coding MGP_C3HHeJ_T0016495.1 MGP_C3HHeJ_G0014599.1 mouse_genomes_project X 129385573 129386516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011049.1 MGP_C3HHeJ_G0009182.1 mouse_genomes_project X 48219609 48219700 - Mir92-2 miRNA miRNA MGP_C3HHeJ_T0016289.1 MGP_C3HHeJ_G0014393.1 mouse_genomes_project X 87859361 87865564 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016075.1 MGP_C3HHeJ_G0014179.1 mouse_genomes_project X 37297622 37298195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094995.1 MGP_C3HHeJ_G0035189.1 mouse_genomes_project X 1592619 1643711 - MGP_C3HHeJ_P0094995 Ccnb3 protein_coding protein_coding MGP_C3HHeJ_T0094996.1 MGP_C3HHeJ_G0035189.1 mouse_genomes_project X 1592619 1655789 - MGP_C3HHeJ_P0094996 Ccnb3 protein_coding protein_coding MGP_C3HHeJ_T0096368.1 MGP_C3HHeJ_G0035573.1 mouse_genomes_project X 86459222 86461977 - MGP_C3HHeJ_P0096368 4930415L06Rik protein_coding protein_coding MGP_C3HHeJ_T0016462.1 MGP_C3HHeJ_G0014566.1 mouse_genomes_project X 117239364 117240194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016407.1 MGP_C3HHeJ_G0014511.1 mouse_genomes_project X 105699120 105700446 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096120.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70555482 70556486 + Taz protein_coding processed_transcript MGP_C3HHeJ_T0096121.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70555482 70556436 + Taz protein_coding processed_transcript MGP_C3HHeJ_T0096122.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556267 70563722 + MGP_C3HHeJ_P0096122 Taz protein_coding protein_coding MGP_C3HHeJ_T0096123.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70559458 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096124.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70561606 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096125.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70563719 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096126.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556320 70563719 + MGP_C3HHeJ_P0096126 Taz protein_coding protein_coding MGP_C3HHeJ_T0096127.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556330 70561850 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096128.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556330 70562275 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096129.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556332 70563719 + MGP_C3HHeJ_P0096129 Taz protein_coding protein_coding MGP_C3HHeJ_T0096130.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556336 70557540 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096131.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556342 70562729 + MGP_C3HHeJ_P0096131 Taz protein_coding protein_coding MGP_C3HHeJ_T0096132.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556359 70557885 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096133.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556491 70562415 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096134.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556578 70562971 + MGP_C3HHeJ_P0096134 Taz protein_coding protein_coding MGP_C3HHeJ_T0096135.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70556652 70563056 + MGP_C3HHeJ_P0096135 Taz protein_coding protein_coding MGP_C3HHeJ_T0096136.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70557507 70562919 + MGP_C3HHeJ_P0096136 Taz protein_coding protein_coding MGP_C3HHeJ_T0096137.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70561235 70562180 + Taz protein_coding retained_intron MGP_C3HHeJ_T0096138.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70561590 70563305 + MGP_C3HHeJ_P0096138 Taz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096139.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70561642 70563459 + MGP_C3HHeJ_P0096139 Taz protein_coding protein_coding MGP_C3HHeJ_T0096140.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70562232 70563302 + MGP_C3HHeJ_P0096140 Taz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096141.1 MGP_C3HHeJ_G0035509.1 mouse_genomes_project X 70562243 70563252 + Taz protein_coding retained_intron MGP_C3HHeJ_T0101054.1 MGP_C3HHeJ_G0039248.1 mouse_genomes_project X 132816589 132816703 - snoRNA snoRNA MGP_C3HHeJ_T0016663.1 MGP_C3HHeJ_G0014767.1 mouse_genomes_project X 159844926 159845845 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095810.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693543 64734438 + MGP_C3HHeJ_P0095810 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095811.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693584 64722577 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095812.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693584 64724561 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095813.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693584 64695107 + Fmr1 protein_coding processed_transcript MGP_C3HHeJ_T0095814.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693626 64734438 + MGP_C3HHeJ_P0095814 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095815.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693804 64734438 + MGP_C3HHeJ_P0095815 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095816.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693804 64734438 + MGP_C3HHeJ_P0095816 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095817.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693813 64734438 + MGP_C3HHeJ_P0095817 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095818.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64693819 64734438 + MGP_C3HHeJ_P0095818 Fmr1 protein_coding protein_coding MGP_C3HHeJ_T0095819.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64710483 64721874 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095820.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64713346 64714020 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0095821.1 MGP_C3HHeJ_G0035446.1 mouse_genomes_project X 64727532 64729003 + Fmr1 protein_coding retained_intron MGP_C3HHeJ_T0009355.1 MGP_C3HHeJ_G0007492.1 mouse_genomes_project X 159633254 159657527 + lincRNA lincRNA MGP_C3HHeJ_T0095939.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69915080 69925412 + MGP_C3HHeJ_P0095939 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095940.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69916612 69924197 + MGP_C3HHeJ_P0095940 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095941.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69916694 69925415 + MGP_C3HHeJ_P0095941 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095942.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69916824 69920231 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095943.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69918412 69920250 + MGP_C3HHeJ_P0095943 Slc6a8 protein_coding protein_coding MGP_C3HHeJ_T0095944.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69919751 69925412 + MGP_C3HHeJ_P0095944 Slc6a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095945.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69919964 69922674 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095946.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921059 69924006 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095947.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921783 69922905 + Slc6a8 protein_coding processed_transcript MGP_C3HHeJ_T0095948.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921798 69922821 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0095949.1 MGP_C3HHeJ_G0035486.1 mouse_genomes_project X 69921798 69922908 + Slc6a8 protein_coding retained_intron MGP_C3HHeJ_T0096987.1 MGP_C3HHeJ_G0035756.1 mouse_genomes_project X 132258828 132297227 - MGP_C3HHeJ_P0096987 Zmat1 protein_coding protein_coding MGP_C3HHeJ_T0096988.1 MGP_C3HHeJ_G0035756.1 mouse_genomes_project X 132258831 132297251 - MGP_C3HHeJ_P0096988 Zmat1 protein_coding protein_coding MGP_C3HHeJ_T0096989.1 MGP_C3HHeJ_G0035756.1 mouse_genomes_project X 132260233 132266055 - Zmat1 protein_coding retained_intron MGP_C3HHeJ_T0096975.1 MGP_C3HHeJ_G0035753.1 mouse_genomes_project X 132034148 132038687 + MGP_C3HHeJ_P0096975 protein_coding protein_coding MGP_C3HHeJ_T0095795.1 MGP_C3HHeJ_G0035435.1 mouse_genomes_project X 60233828 60234767 - MGP_C3HHeJ_P0095795 Olfr1173 protein_coding protein_coding MGP_C3HHeJ_T0015986.1 MGP_C3HHeJ_G0014090.1 mouse_genomes_project X 3928664 3929490 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096527.1 MGP_C3HHeJ_G0035620.1 mouse_genomes_project X 97464123 97470079 + MGP_C3HHeJ_P0096527 Awat1 protein_coding protein_coding MGP_C3HHeJ_T0016021.1 MGP_C3HHeJ_G0014125.1 mouse_genomes_project X 12927043 12927880 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016484.1 MGP_C3HHeJ_G0014588.1 mouse_genomes_project X 126666800 126667586 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009341.1 MGP_C3HHeJ_G0007485.1 mouse_genomes_project X 137729977 137828119 - Gm15046 lincRNA lincRNA MGP_C3HHeJ_T0016153.1 MGP_C3HHeJ_G0014257.1 mouse_genomes_project X 57419157 57420000 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096655.1 MGP_C3HHeJ_G0035648.1 mouse_genomes_project X 99097486 99113776 - MGP_C3HHeJ_P0096655 Ercc6l protein_coding protein_coding MGP_C3HHeJ_T0009316.1 MGP_C3HHeJ_G0007473.1 mouse_genomes_project X 97634857 97644149 + Gm14902 lincRNA lincRNA MGP_C3HHeJ_T0095606.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928209 43969112 - Aifm1 protein_coding retained_intron MGP_C3HHeJ_T0095607.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928209 43969245 - MGP_C3HHeJ_P0095607 Aifm1 protein_coding protein_coding MGP_C3HHeJ_T0095608.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928209 43969249 - MGP_C3HHeJ_P0095608 Aifm1 protein_coding protein_coding MGP_C3HHeJ_T0095609.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43928210 43936166 - Aifm1 protein_coding processed_transcript MGP_C3HHeJ_T0095610.1 MGP_C3HHeJ_G0035366.1 mouse_genomes_project X 43938727 43939788 - Aifm1 protein_coding processed_transcript MGP_C3HHeJ_T0011058.1 MGP_C3HHeJ_G0009191.1 mouse_genomes_project X 48547667 48547766 - Mir351 miRNA miRNA MGP_C3HHeJ_T0102332.1 MGP_C3HHeJ_G0040295.1 mouse_genomes_project X 3402159 3402251 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095799.1 MGP_C3HHeJ_G0035438.1 mouse_genomes_project X 60407036 60419142 - MGP_C3HHeJ_P0095799 Slitrk4 protein_coding protein_coding MGP_C3HHeJ_T0095800.1 MGP_C3HHeJ_G0035438.1 mouse_genomes_project X 60411914 60419125 - MGP_C3HHeJ_P0095800 Slitrk4 protein_coding protein_coding MGP_C3HHeJ_T0095801.1 MGP_C3HHeJ_G0035438.1 mouse_genomes_project X 60414865 60417968 - MGP_C3HHeJ_P0095801 Slitrk4 protein_coding protein_coding MGP_C3HHeJ_T0101056.1 MGP_C3HHeJ_G0039250.1 mouse_genomes_project X 134663483 134663602 + Gm23679 snoRNA snoRNA MGP_C3HHeJ_T0016260.1 MGP_C3HHeJ_G0014364.1 mouse_genomes_project X 82171064 82171432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016610.1 MGP_C3HHeJ_G0014714.1 mouse_genomes_project X 149739463 149739850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099817.1 MGP_C3HHeJ_G0038011.1 mouse_genomes_project X 167095894 167096006 - Gm23197 snRNA snRNA MGP_C3HHeJ_T0096818.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565664 108642687 - MGP_C3HHeJ_P0096818 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096819.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565664 108642839 - MGP_C3HHeJ_P0096819 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096820.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565665 108664581 - MGP_C3HHeJ_P0096820 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096821.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108565665 108642839 - MGP_C3HHeJ_P0096821 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096822.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108567251 108642749 - MGP_C3HHeJ_P0096822 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096823.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108613528 108664560 - MGP_C3HHeJ_P0096823 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096824.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108613560 108643242 - MGP_C3HHeJ_P0096824 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096825.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108614467 108710257 - MGP_C3HHeJ_P0096825 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096826.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108618809 108642283 - MGP_C3HHeJ_P0096826 Rps6ka6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096827.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108618886 108717999 - MGP_C3HHeJ_P0096827 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096828.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108625861 108718011 - MGP_C3HHeJ_P0096828 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0096829.1 MGP_C3HHeJ_G0035704.1 mouse_genomes_project X 108629959 108716393 - MGP_C3HHeJ_P0096829 Rps6ka6 protein_coding protein_coding MGP_C3HHeJ_T0095907.1 MGP_C3HHeJ_G0035472.1 mouse_genomes_project X 69227666 69232240 - MGP_C3HHeJ_P0095907 Pnma5 protein_coding protein_coding MGP_C3HHeJ_T0095908.1 MGP_C3HHeJ_G0035472.1 mouse_genomes_project X 69227673 69231240 - MGP_C3HHeJ_P0095908 Pnma5 protein_coding protein_coding MGP_C3HHeJ_T0095769.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54952758 55470756 - MGP_C3HHeJ_P0095769 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095770.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54952758 55028755 - MGP_C3HHeJ_P0095770 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095771.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54952758 55061963 - MGP_C3HHeJ_P0095771 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095772.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 54954130 55027532 - Fgf13 protein_coding processed_transcript MGP_C3HHeJ_T0095773.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55025756 55027480 - Fgf13 protein_coding processed_transcript MGP_C3HHeJ_T0095774.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55025759 55470157 - MGP_C3HHeJ_P0095774 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095775.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55153179 55470756 - MGP_C3HHeJ_P0095775 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095776.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55153256 55470506 - MGP_C3HHeJ_P0095776 Fgf13 protein_coding protein_coding MGP_C3HHeJ_T0095777.1 MGP_C3HHeJ_G0035425.1 mouse_genomes_project X 55469498 55470733 - Fgf13 protein_coding retained_intron MGP_C3HHeJ_T0016372.1 MGP_C3HHeJ_G0014476.1 mouse_genomes_project X 100816149 100816867 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016425.1 MGP_C3HHeJ_G0014529.1 mouse_genomes_project X 109968649 109969630 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016639.1 MGP_C3HHeJ_G0014743.1 mouse_genomes_project X 155857888 155858020 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016242.1 MGP_C3HHeJ_G0014346.1 mouse_genomes_project X 76211925 76212768 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015972.1 MGP_C3HHeJ_G0014076.1 mouse_genomes_project X 2554751 2555950 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095583.1 MGP_C3HHeJ_G0035359.1 mouse_genomes_project X 43454783 43464308 - MGP_C3HHeJ_P0095583 Apln protein_coding protein_coding MGP_C3HHeJ_T0097110.1 MGP_C3HHeJ_G0035805.1 mouse_genomes_project X 137348557 137359121 + MGP_C3HHeJ_P0097110 Cldn2 protein_coding protein_coding MGP_C3HHeJ_T0097111.1 MGP_C3HHeJ_G0035805.1 mouse_genomes_project X 137350521 137356448 + MGP_C3HHeJ_P0097111 Cldn2 protein_coding protein_coding MGP_C3HHeJ_T0097112.1 MGP_C3HHeJ_G0035805.1 mouse_genomes_project X 137353815 137356836 + MGP_C3HHeJ_P0097112 Cldn2 protein_coding protein_coding MGP_C3HHeJ_T0016029.1 MGP_C3HHeJ_G0014133.1 mouse_genomes_project X 14931480 14931696 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016401.1 MGP_C3HHeJ_G0014505.1 mouse_genomes_project X 104474209 104475094 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096362.1 MGP_C3HHeJ_G0035570.1 mouse_genomes_project X 83148218 84563792 - MGP_C3HHeJ_P0096362 Il1rapl1 protein_coding protein_coding MGP_C3HHeJ_T0096363.1 MGP_C3HHeJ_G0035570.1 mouse_genomes_project X 83155585 84326913 - MGP_C3HHeJ_P0096363 Il1rapl1 protein_coding protein_coding MGP_C3HHeJ_T0096364.1 MGP_C3HHeJ_G0035570.1 mouse_genomes_project X 83178940 84563792 - MGP_C3HHeJ_P0096364 Il1rapl1 protein_coding protein_coding MGP_C3HHeJ_T0016086.1 MGP_C3HHeJ_G0014190.1 mouse_genomes_project X 39903322 39903662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102360.1 MGP_C3HHeJ_G0040323.1 mouse_genomes_project X 85749533 85750587 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011071.1 MGP_C3HHeJ_G0009204.1 mouse_genomes_project X 62851636 62851703 - Mir471 miRNA miRNA MGP_C3HHeJ_T0011097.1 MGP_C3HHeJ_G0009230.1 mouse_genomes_project X 91040442 91040506 + Mir7673 miRNA miRNA MGP_C3HHeJ_T0096886.1 MGP_C3HHeJ_G0035729.1 mouse_genomes_project X 124844135 124858295 - MGP_C3HHeJ_P0096886 Cldn34c4 protein_coding protein_coding MGP_C3HHeJ_T0102370.1 MGP_C3HHeJ_G0040333.1 mouse_genomes_project X 145459211 145461126 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016080.1 MGP_C3HHeJ_G0014184.1 mouse_genomes_project X 38869388 38869560 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016485.1 MGP_C3HHeJ_G0014589.1 mouse_genomes_project X 126740157 126740480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011114.1 MGP_C3HHeJ_G0009247.1 mouse_genomes_project X 128036890 128037000 - Gm26209 miRNA miRNA MGP_C3HHeJ_T0016514.1 MGP_C3HHeJ_G0014618.1 mouse_genomes_project X 133490378 133490731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101049.1 MGP_C3HHeJ_G0039243.1 mouse_genomes_project X 128070010 128070139 - Gm25170 snoRNA snoRNA MGP_C3HHeJ_T0095035.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2303034 2313640 + MGP_C3HHeJ_P0095035 Prickle3 protein_coding protein_coding MGP_C3HHeJ_T0095036.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2303246 2306903 + Prickle3 protein_coding retained_intron MGP_C3HHeJ_T0095037.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2304307 2313827 + MGP_C3HHeJ_P0095037 Prickle3 protein_coding protein_coding MGP_C3HHeJ_T0095038.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2308537 2313640 + Prickle3 protein_coding retained_intron MGP_C3HHeJ_T0095039.1 MGP_C3HHeJ_G0035198.1 mouse_genomes_project X 2311804 2312844 + Prickle3 protein_coding retained_intron MGP_C3HHeJ_T0095440.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123374 32123946 + Ube2a protein_coding processed_transcript MGP_C3HHeJ_T0095441.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123805 32124842 + Ube2a protein_coding retained_intron MGP_C3HHeJ_T0095442.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123805 32133470 + MGP_C3HHeJ_P0095442 Ube2a protein_coding protein_coding MGP_C3HHeJ_T0095443.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123815 32134144 + MGP_C3HHeJ_P0095443 Ube2a protein_coding protein_coding MGP_C3HHeJ_T0095444.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32123960 32134449 + MGP_C3HHeJ_P0095444 Ube2a protein_coding protein_coding MGP_C3HHeJ_T0095445.1 MGP_C3HHeJ_G0035314.1 mouse_genomes_project X 32131696 32133475 + Ube2a protein_coding retained_intron MGP_C3HHeJ_T0016214.1 MGP_C3HHeJ_G0014318.1 mouse_genomes_project X 71457422 71457629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102345.1 MGP_C3HHeJ_G0040308.1 mouse_genomes_project X 53551919 53552063 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095695.1 MGP_C3HHeJ_G0035397.1 mouse_genomes_project X 48956008 48964404 + MGP_C3HHeJ_P0095695 Etd protein_coding protein_coding MGP_C3HHeJ_T0102365.1 MGP_C3HHeJ_G0040328.1 mouse_genomes_project X 103530077 103533471 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095487.1 MGP_C3HHeJ_G0035337.1 mouse_genomes_project X 33636118 33656692 + MGP_C3HHeJ_P0095487 Atp1b4 protein_coding protein_coding MGP_C3HHeJ_T0095488.1 MGP_C3HHeJ_G0035337.1 mouse_genomes_project X 33636118 33656692 + MGP_C3HHeJ_P0095488 Atp1b4 protein_coding protein_coding MGP_C3HHeJ_T0016693.1 MGP_C3HHeJ_G0014797.1 mouse_genomes_project X 167055290 167055623 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016405.1 MGP_C3HHeJ_G0014509.1 mouse_genomes_project X 104716877 104717192 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005547.1 MGP_C3HHeJ_G0004664.1 mouse_genomes_project X 168533062 168538396 - Gm15726 antisense antisense MGP_C3HHeJ_T0016373.1 MGP_C3HHeJ_G0014477.1 mouse_genomes_project X 100901104 100901627 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016040.1 MGP_C3HHeJ_G0014144.1 mouse_genomes_project X 16760131 16760512 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099759.1 MGP_C3HHeJ_G0037953.1 mouse_genomes_project X 43666560 43666719 + Gm24038 snRNA snRNA MGP_C3HHeJ_T0097157.1 MGP_C3HHeJ_G0035817.1 mouse_genomes_project X 138532725 138570397 + Atg4a protein_coding processed_transcript MGP_C3HHeJ_T0097158.1 MGP_C3HHeJ_G0035817.1 mouse_genomes_project X 138532737 138744066 + MGP_C3HHeJ_P0097158 Atg4a protein_coding protein_coding MGP_C3HHeJ_T0097159.1 MGP_C3HHeJ_G0035817.1 mouse_genomes_project X 138742449 138744207 + Atg4a protein_coding retained_intron MGP_C3HHeJ_T0016648.1 MGP_C3HHeJ_G0014752.1 mouse_genomes_project X 156797039 156797624 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095699.1 MGP_C3HHeJ_G0035401.1 mouse_genomes_project X 49277767 49291414 + MGP_C3HHeJ_P0095699 4930502E18Rik protein_coding protein_coding MGP_C3HHeJ_T0011122.1 MGP_C3HHeJ_G0009255.1 mouse_genomes_project X 140588960 140589055 - Gm44351 miRNA miRNA MGP_C3HHeJ_T0011072.1 MGP_C3HHeJ_G0009205.1 mouse_genomes_project X 62855817 62855888 - Mir741 miRNA miRNA MGP_C3HHeJ_T0011689.1 MGP_C3HHeJ_G0009822.1 mouse_genomes_project X 161074620 161074921 + Gm22257 misc_RNA misc_RNA MGP_C3HHeJ_T0097529.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159101653 159268796 - MGP_C3HHeJ_P0097529 Cdkl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097530.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159101653 159268763 - MGP_C3HHeJ_P0097530 Cdkl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097531.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159115430 159331582 - MGP_C3HHeJ_P0097531 Cdkl5 protein_coding protein_coding MGP_C3HHeJ_T0097533.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159130273 159148341 - Cdkl5 protein_coding processed_transcript MGP_C3HHeJ_T0097534.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159132514 159268763 - MGP_C3HHeJ_P0097534 Cdkl5 protein_coding protein_coding MGP_C3HHeJ_T0097535.1 MGP_C3HHeJ_G0035903.1 mouse_genomes_project X 159179877 159183425 - Cdkl5 protein_coding retained_intron MGP_C3HHeJ_T0015983.1 MGP_C3HHeJ_G0014087.1 mouse_genomes_project X 3865652 3866315 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011112.1 MGP_C3HHeJ_G0009245.1 mouse_genomes_project X 110265603 110265673 - Mir361 miRNA miRNA MGP_C3HHeJ_T0016039.1 MGP_C3HHeJ_G0014143.1 mouse_genomes_project X 16632787 16634170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096113.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70545998 70555979 - MGP_C3HHeJ_P0096113 Dnase1l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096114.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546004 70555307 - MGP_C3HHeJ_P0096114 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096115.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546005 70555908 - MGP_C3HHeJ_P0096115 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096116.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546106 70555169 - MGP_C3HHeJ_P0096116 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096117.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70546760 70555246 - MGP_C3HHeJ_P0096117 Dnase1l1 protein_coding protein_coding MGP_C3HHeJ_T0096118.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70547155 70550201 - Dnase1l1 protein_coding retained_intron MGP_C3HHeJ_T0096119.1 MGP_C3HHeJ_G0035508.1 mouse_genomes_project X 70550139 70555197 - Dnase1l1 protein_coding retained_intron MGP_C3HHeJ_T0016384.1 MGP_C3HHeJ_G0014488.1 mouse_genomes_project X 102348647 102350629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016435.1 MGP_C3HHeJ_G0014539.1 mouse_genomes_project X 111640517 111641878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011115.1 MGP_C3HHeJ_G0009248.1 mouse_genomes_project X 131300409 131300491 + Mir3112 miRNA miRNA MGP_C3HHeJ_T0096918.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131312530 131339454 - MGP_C3HHeJ_P0096918 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096919.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131313161 131339365 - MGP_C3HHeJ_P0096919 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096920.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131313253 131339308 - MGP_C3HHeJ_P0096920 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096921.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131335394 131461759 - MGP_C3HHeJ_P0096921 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0096922.1 MGP_C3HHeJ_G0035738.1 mouse_genomes_project X 131335394 131370006 - MGP_C3HHeJ_P0096922 Nox1 protein_coding protein_coding MGP_C3HHeJ_T0095698.1 MGP_C3HHeJ_G0035400.1 mouse_genomes_project X 49191956 49192963 - MGP_C3HHeJ_P0095698 Cxx1b protein_coding protein_coding MGP_C3HHeJ_T0097415.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819289 151836875 + MGP_C3HHeJ_P0097415 2210013O21Rik protein_coding protein_coding MGP_C3HHeJ_T0097416.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819309 151837531 + MGP_C3HHeJ_P0097416 2210013O21Rik protein_coding protein_coding MGP_C3HHeJ_T0097417.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819326 151824887 + MGP_C3HHeJ_P0097417 2210013O21Rik protein_coding protein_coding MGP_C3HHeJ_T0097418.1 MGP_C3HHeJ_G0035873.1 mouse_genomes_project X 151819638 151836733 + 2210013O21Rik protein_coding processed_transcript MGP_C3HHeJ_T0016494.1 MGP_C3HHeJ_G0014598.1 mouse_genomes_project X 129365182 129366084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095471.1 MGP_C3HHeJ_G0035330.1 mouse_genomes_project X 33318457 33323369 - MGP_C3HHeJ_P0095471 Btg1-ps2 protein_coding protein_coding MGP_C3HHeJ_T0095472.1 MGP_C3HHeJ_G0035330.1 mouse_genomes_project X 33318540 33320068 - Btg1-ps2 protein_coding processed_transcript MGP_C3HHeJ_T0016046.1 MGP_C3HHeJ_G0014150.1 mouse_genomes_project X 18559614 18560064 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095369.1 MGP_C3HHeJ_G0035287.1 mouse_genomes_project X 15988928 15993532 + MGP_C3HHeJ_P0095369 Timp1 protein_coding protein_coding MGP_C3HHeJ_T0095370.1 MGP_C3HHeJ_G0035287.1 mouse_genomes_project X 15988983 15993534 + MGP_C3HHeJ_P0095370 Timp1 protein_coding protein_coding MGP_C3HHeJ_T0096443.1 MGP_C3HHeJ_G0035596.1 mouse_genomes_project X 92320928 92328695 - MGP_C3HHeJ_P0096443 Asb12 protein_coding protein_coding MGP_C3HHeJ_T0016288.1 MGP_C3HHeJ_G0014392.1 mouse_genomes_project X 87854282 87855306 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095147.1 MGP_C3HHeJ_G0035221.1 mouse_genomes_project X 2772279 2782591 - MGP_C3HHeJ_P0095147 Was protein_coding protein_coding MGP_C3HHeJ_T0016655.1 MGP_C3HHeJ_G0014759.1 mouse_genomes_project X 158341967 158342401 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016674.1 MGP_C3HHeJ_G0014778.1 mouse_genomes_project X 161726328 161726798 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016521.1 MGP_C3HHeJ_G0014625.1 mouse_genomes_project X 134148335 134148742 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095489.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33734229 33788477 - MGP_C3HHeJ_P0095489 Lamp2 protein_coding protein_coding MGP_C3HHeJ_T0095490.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33737934 33788477 - MGP_C3HHeJ_P0095490 Lamp2 protein_coding protein_coding MGP_C3HHeJ_T0095491.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33751357 33788477 - MGP_C3HHeJ_P0095491 Lamp2 protein_coding protein_coding MGP_C3HHeJ_T0095492.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33761744 33775404 - Lamp2 protein_coding retained_intron MGP_C3HHeJ_T0095493.1 MGP_C3HHeJ_G0035338.1 mouse_genomes_project X 33785138 33788437 - Lamp2 protein_coding processed_transcript MGP_C3HHeJ_T0016123.1 MGP_C3HHeJ_G0014227.1 mouse_genomes_project X 49759986 49760163 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016647.1 MGP_C3HHeJ_G0014751.1 mouse_genomes_project X 156596790 156597367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096480.1 MGP_C3HHeJ_G0035608.1 mouse_genomes_project X 94992284 95167427 + MGP_C3HHeJ_P0096480 Ar protein_coding protein_coding MGP_C3HHeJ_T0016360.1 MGP_C3HHeJ_G0014464.1 mouse_genomes_project X 100376071 100377875 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016520.1 MGP_C3HHeJ_G0014624.1 mouse_genomes_project X 134011992 134012621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016081.1 MGP_C3HHeJ_G0014185.1 mouse_genomes_project X 38983365 38983648 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016228.1 MGP_C3HHeJ_G0014332.1 mouse_genomes_project X 73989297 73989897 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097384.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150315541 150321115 - Tspyl2 protein_coding retained_intron MGP_C3HHeJ_T0097385.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150315541 150321115 - Tspyl2 protein_coding retained_intron MGP_C3HHeJ_T0097386.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150315544 150321115 - MGP_C3HHeJ_P0097386 Tspyl2 protein_coding protein_coding MGP_C3HHeJ_T0097387.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150317990 150320534 - MGP_C3HHeJ_P0097387 Tspyl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097388.1 MGP_C3HHeJ_G0035860.1 mouse_genomes_project X 150318954 150320491 - Tspyl2 protein_coding retained_intron MGP_C3HHeJ_T0102375.1 MGP_C3HHeJ_G0040338.1 mouse_genomes_project X 152353198 152355468 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096900.1 MGP_C3HHeJ_G0035733.1 mouse_genomes_project X 131085373 131099966 + MGP_C3HHeJ_P0096900 Tnmd protein_coding protein_coding MGP_C3HHeJ_T0095116.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2567958 2572761 - MGP_C3HHeJ_P0095116 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095117.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2568022 2572471 - MGP_C3HHeJ_P0095117 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095118.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2568150 2572691 - MGP_C3HHeJ_P0095118 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095119.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2568233 2572492 - MGP_C3HHeJ_P0095119 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0095120.1 MGP_C3HHeJ_G0035211.1 mouse_genomes_project X 2569366 2572388 - MGP_C3HHeJ_P0095120 Pqbp1 protein_coding protein_coding MGP_C3HHeJ_T0016529.1 MGP_C3HHeJ_G0014633.1 mouse_genomes_project X 134624555 134625153 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096450.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92780899 92802424 - MGP_C3HHeJ_P0096450 Las1l protein_coding protein_coding MGP_C3HHeJ_T0096451.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92786514 92802397 - Las1l protein_coding retained_intron MGP_C3HHeJ_T0096452.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92790850 92792587 - Las1l protein_coding processed_transcript MGP_C3HHeJ_T0096453.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92791320 92795442 - Las1l protein_coding processed_transcript MGP_C3HHeJ_T0096454.1 MGP_C3HHeJ_G0035599.1 mouse_genomes_project X 92793818 92802473 - Las1l protein_coding retained_intron MGP_C3HHeJ_T0016636.1 MGP_C3HHeJ_G0014740.1 mouse_genomes_project X 155671670 155672580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016322.1 MGP_C3HHeJ_G0014426.1 mouse_genomes_project X 92090415 92091398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011669.1 MGP_C3HHeJ_G0009802.1 mouse_genomes_project X 100578439 100578565 - Gm27927 misc_RNA misc_RNA MGP_C3HHeJ_T0016161.1 MGP_C3HHeJ_G0014265.1 mouse_genomes_project X 58220305 58221405 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016400.1 MGP_C3HHeJ_G0014504.1 mouse_genomes_project X 104091879 104092171 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096294.1 MGP_C3HHeJ_G0035548.1 mouse_genomes_project X 73824738 73977537 + MGP_C3HHeJ_P0096294 Tbl1x protein_coding protein_coding MGP_C3HHeJ_T0096295.1 MGP_C3HHeJ_G0035548.1 mouse_genomes_project X 73824939 73974298 + Tbl1x protein_coding retained_intron MGP_C3HHeJ_T0096522.1 MGP_C3HHeJ_G0035617.1 mouse_genomes_project X 97317314 97318187 + MGP_C3HHeJ_P0096522 Otud6a protein_coding protein_coding MGP_C3HHeJ_T0011682.1 MGP_C3HHeJ_G0009815.1 mouse_genomes_project X 135286441 135286726 - Gm25393 misc_RNA misc_RNA MGP_C3HHeJ_T0096470.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566184 93569252 + Gpr165 protein_coding retained_intron MGP_C3HHeJ_T0096471.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566235 93572120 + MGP_C3HHeJ_P0096471 Gpr165 protein_coding protein_coding MGP_C3HHeJ_T0096472.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566256 93568517 + Gpr165 protein_coding retained_intron MGP_C3HHeJ_T0096473.1 MGP_C3HHeJ_G0035604.1 mouse_genomes_project X 93566928 93572014 + Gpr165 protein_coding retained_intron MGP_C3HHeJ_T0016122.1 MGP_C3HHeJ_G0014226.1 mouse_genomes_project X 49401411 49401892 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016587.1 MGP_C3HHeJ_G0014691.1 mouse_genomes_project X 143695171 143695705 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009347.1 MGP_C3HHeJ_G0007490.1 mouse_genomes_project X 149115926 149117872 + Gm15138 lincRNA lincRNA MGP_C3HHeJ_T0096491.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95785152 95794005 + MGP_C3HHeJ_P0096491 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096492.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786146 95792509 + MGP_C3HHeJ_P0096492 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096493.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786174 95788755 + MGP_C3HHeJ_P0096493 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096494.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786634 95793780 + Yipf6 protein_coding retained_intron MGP_C3HHeJ_T0096495.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95786634 95797896 + MGP_C3HHeJ_P0096495 Yipf6 protein_coding protein_coding MGP_C3HHeJ_T0096496.1 MGP_C3HHeJ_G0035610.1 mouse_genomes_project X 95787080 95792909 + Yipf6 protein_coding retained_intron MGP_C3HHeJ_T0096690.1 MGP_C3HHeJ_G0035660.1 mouse_genomes_project X 100461733 100502976 + MGP_C3HHeJ_P0096690 Chic1 protein_coding protein_coding MGP_C3HHeJ_T0096766.1 MGP_C3HHeJ_G0035683.1 mouse_genomes_project X 103854131 103884277 - MGP_C3HHeJ_P0096766 Cysltr1 protein_coding protein_coding MGP_C3HHeJ_T0096767.1 MGP_C3HHeJ_G0035683.1 mouse_genomes_project X 103857682 103860724 - MGP_C3HHeJ_P0096767 Cysltr1 protein_coding protein_coding MGP_C3HHeJ_T0096700.1 MGP_C3HHeJ_G0035666.1 mouse_genomes_project X 101231519 101348154 - MGP_C3HHeJ_P0096700 C77370 protein_coding protein_coding MGP_C3HHeJ_T0096701.1 MGP_C3HHeJ_G0035666.1 mouse_genomes_project X 101231520 101348086 - MGP_C3HHeJ_P0096701 C77370 protein_coding protein_coding MGP_C3HHeJ_T0096702.1 MGP_C3HHeJ_G0035666.1 mouse_genomes_project X 101237799 101348113 - MGP_C3HHeJ_P0096702 C77370 protein_coding protein_coding MGP_C3HHeJ_T0009314.1 MGP_C3HHeJ_G0007471.1 mouse_genomes_project X 96275506 96314485 - Gm14812 lincRNA lincRNA MGP_C3HHeJ_T0097378.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206551 150247696 + MGP_C3HHeJ_P0097378 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097379.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206760 150248463 + MGP_C3HHeJ_P0097379 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097380.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206785 150220279 + Kdm5c protein_coding retained_intron MGP_C3HHeJ_T0097381.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150206803 150247700 + MGP_C3HHeJ_P0097381 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097382.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150243733 150245484 + MGP_C3HHeJ_P0097382 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0097383.1 MGP_C3HHeJ_G0035859.1 mouse_genomes_project X 150245840 150247324 + MGP_C3HHeJ_P0097383 Kdm5c protein_coding protein_coding MGP_C3HHeJ_T0095197.1 MGP_C3HHeJ_G0035231.1 mouse_genomes_project X 3114288 3116626 + MGP_C3HHeJ_P0095197 protein_coding protein_coding MGP_C3HHeJ_T0016130.1 MGP_C3HHeJ_G0014234.1 mouse_genomes_project X 53541305 53542481 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095705.1 MGP_C3HHeJ_G0035406.1 mouse_genomes_project X 52265929 52267132 + MGP_C3HHeJ_P0095705 Gm2174 protein_coding protein_coding MGP_C3HHeJ_T0016356.1 MGP_C3HHeJ_G0014460.1 mouse_genomes_project X 100138037 100138727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016150.1 MGP_C3HHeJ_G0014254.1 mouse_genomes_project X 56909078 56909803 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016566.1 MGP_C3HHeJ_G0014670.1 mouse_genomes_project X 140035519 140035729 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016176.1 MGP_C3HHeJ_G0014280.1 mouse_genomes_project X 63050321 63050850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098222.1 MGP_C3HHeJ_G0036434.1 mouse_genomes_project X 64995151 64995272 - n-R5s7 rRNA rRNA MGP_C3HHeJ_T0016528.1 MGP_C3HHeJ_G0014632.1 mouse_genomes_project X 134609750 134610584 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095589.1 MGP_C3HHeJ_G0035361.1 mouse_genomes_project X 43581333 43596442 + MGP_C3HHeJ_P0095589 Sash3 protein_coding protein_coding MGP_C3HHeJ_T0016115.1 MGP_C3HHeJ_G0014219.1 mouse_genomes_project X 48260960 48261283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016320.1 MGP_C3HHeJ_G0014424.1 mouse_genomes_project X 91824033 91825278 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016443.1 MGP_C3HHeJ_G0014547.1 mouse_genomes_project X 112826982 112827372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095700.1 MGP_C3HHeJ_G0035402.1 mouse_genomes_project X 49295872 49310389 - MGP_C3HHeJ_P0095700 1700013H16Rik protein_coding protein_coding MGP_C3HHeJ_T0016381.1 MGP_C3HHeJ_G0014485.1 mouse_genomes_project X 102148677 102149175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098256.1 MGP_C3HHeJ_G0036468.1 mouse_genomes_project X 150892459 150892700 + Gm24687 ribozyme ribozyme MGP_C3HHeJ_T0016675.1 MGP_C3HHeJ_G0014779.1 mouse_genomes_project X 161882431 161883916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016234.1 MGP_C3HHeJ_G0014338.1 mouse_genomes_project X 74708246 74712607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015965.1 MGP_C3HHeJ_G0014069.1 mouse_genomes_project X 1777333 1777764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097073.1 MGP_C3HHeJ_G0035790.1 mouse_genomes_project X 134554168 134587446 + MGP_C3HHeJ_P0097073 Fam199x protein_coding protein_coding MGP_C3HHeJ_T0095417.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422374 31427631 + MGP_C3HHeJ_P0095417 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0095418.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422416 31427639 + MGP_C3HHeJ_P0095418 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0095419.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422429 31427638 + MGP_C3HHeJ_P0095419 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0095420.1 MGP_C3HHeJ_G0035305.1 mouse_genomes_project X 31422456 31427638 + MGP_C3HHeJ_P0095420 Zcchc12 protein_coding protein_coding MGP_C3HHeJ_T0009309.1 MGP_C3HHeJ_G0007466.1 mouse_genomes_project X 87675875 87676499 + Gm14773 lincRNA lincRNA MGP_C3HHeJ_T0016330.1 MGP_C3HHeJ_G0014434.1 mouse_genomes_project X 93836190 93836582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011078.1 MGP_C3HHeJ_G0009211.1 mouse_genomes_project X 62876966 62877041 - Mir470 miRNA miRNA MGP_C3HHeJ_T0016251.1 MGP_C3HHeJ_G0014355.1 mouse_genomes_project X 78727185 78728335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101061.1 MGP_C3HHeJ_G0039255.1 mouse_genomes_project X 148719946 148720074 - Gm24907 snoRNA snoRNA MGP_C3HHeJ_T0016206.1 MGP_C3HHeJ_G0014310.1 mouse_genomes_project X 70780210 70780654 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095226.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 4931542 5094287 - MGP_C3HHeJ_P0095226 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095227.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5027096 5094287 - MGP_C3HHeJ_P0095227 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095228.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5027554 5094060 - MGP_C3HHeJ_P0095228 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095229.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5030477 5094287 - MGP_C3HHeJ_P0095229 Rpgr protein_coding protein_coding MGP_C3HHeJ_T0095230.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5052868 5094125 - Rpgr protein_coding retained_intron MGP_C3HHeJ_T0095231.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5084431 5094100 - Rpgr protein_coding retained_intron MGP_C3HHeJ_T0095232.1 MGP_C3HHeJ_G0035249.1 mouse_genomes_project X 5090929 5093849 - Rpgr protein_coding processed_transcript MGP_C3HHeJ_T0095951.1 MGP_C3HHeJ_G0035488.1 mouse_genomes_project X 69961561 69983378 + MGP_C3HHeJ_P0095951 Abcd1 protein_coding protein_coding MGP_C3HHeJ_T0095952.1 MGP_C3HHeJ_G0035488.1 mouse_genomes_project X 69961704 69976396 + MGP_C3HHeJ_P0095952 Abcd1 protein_coding protein_coding MGP_C3HHeJ_T0097638.1 MGP_C3HHeJ_G0035933.1 mouse_genomes_project X 164611735 164630802 + MGP_C3HHeJ_P0097638 Gemin8 protein_coding protein_coding MGP_C3HHeJ_T0097639.1 MGP_C3HHeJ_G0035933.1 mouse_genomes_project X 164619405 164621785 + MGP_C3HHeJ_P0097639 Gemin8 protein_coding protein_coding MGP_C3HHeJ_T0097511.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158719624 158793910 + Adgrg2 protein_coding retained_intron MGP_C3HHeJ_T0097512.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158719624 158802242 + MGP_C3HHeJ_P0097512 Adgrg2 protein_coding protein_coding MGP_C3HHeJ_T0097513.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158748122 158829136 + MGP_C3HHeJ_P0097513 Adgrg2 protein_coding protein_coding MGP_C3HHeJ_T0097514.1 MGP_C3HHeJ_G0035899.1 mouse_genomes_project X 158756596 158829385 + MGP_C3HHeJ_P0097514 Adgrg2 protein_coding protein_coding MGP_C3HHeJ_T0095841.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67338846 67452848 + MGP_C3HHeJ_P0095841 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095842.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67342981 67452848 + MGP_C3HHeJ_P0095842 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095843.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67342981 67452848 + MGP_C3HHeJ_P0095843 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095844.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67342981 67390938 + MGP_C3HHeJ_P0095844 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095845.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343003 67452841 + MGP_C3HHeJ_P0095845 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095846.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343006 67433703 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095847.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343011 67432424 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095848.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343014 67452818 + MGP_C3HHeJ_P0095848 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095849.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343034 67447866 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095850.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343057 67452818 + MGP_C3HHeJ_P0095850 Mtm1 protein_coding protein_coding MGP_C3HHeJ_T0095851.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343060 67364690 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095852.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67343060 67384467 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0095853.1 MGP_C3HHeJ_G0035454.1 mouse_genomes_project X 67436258 67453244 + Mtm1 protein_coding retained_intron MGP_C3HHeJ_T0097107.1 MGP_C3HHeJ_G0035803.1 mouse_genomes_project X 137254712 137255381 - protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0016277.1 MGP_C3HHeJ_G0014381.1 mouse_genomes_project X 85467924 85468197 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098231.1 MGP_C3HHeJ_G0036443.1 mouse_genomes_project X 150285338 150285449 + n-R5s15 rRNA rRNA MGP_C3HHeJ_T0016618.1 MGP_C3HHeJ_G0014722.1 mouse_genomes_project X 151876620 151876900 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018412.1 MGP_C3HHeJ_G0015543.1 mouse_genomes_project X 98202415 98227981 + Gm21986 processed_transcript processed_transcript MGP_C3HHeJ_T0096910.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284310 131312156 + MGP_C3HHeJ_P0096910 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096911.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284320 131312929 + MGP_C3HHeJ_P0096911 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096912.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284338 131300957 + MGP_C3HHeJ_P0096912 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096913.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284434 131286610 + Cstf2 protein_coding processed_transcript MGP_C3HHeJ_T0096914.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284457 131312929 + Cstf2 protein_coding retained_intron MGP_C3HHeJ_T0096915.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131284457 131287747 + MGP_C3HHeJ_P0096915 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096916.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131287510 131299367 + MGP_C3HHeJ_P0096916 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0096917.1 MGP_C3HHeJ_G0035737.1 mouse_genomes_project X 131291374 131299404 + MGP_C3HHeJ_P0096917 Cstf2 protein_coding protein_coding MGP_C3HHeJ_T0016182.1 MGP_C3HHeJ_G0014286.1 mouse_genomes_project X 64343080 64343446 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016254.1 MGP_C3HHeJ_G0014358.1 mouse_genomes_project X 80420948 80421380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096344.1 MGP_C3HHeJ_G0035563.1 mouse_genomes_project X 81613449 81634549 + MGP_C3HHeJ_P0096344 Fthl17a protein_coding protein_coding MGP_C3HHeJ_T0101028.1 MGP_C3HHeJ_G0039222.1 mouse_genomes_project X 70060002 70060067 + Gm23615 snoRNA snoRNA MGP_C3HHeJ_T0097602.1 MGP_C3HHeJ_G0035922.1 mouse_genomes_project X 162566357 162615444 + MGP_C3HHeJ_P0097602 Ace2 protein_coding protein_coding MGP_C3HHeJ_T0097603.1 MGP_C3HHeJ_G0035922.1 mouse_genomes_project X 162567503 162615444 + MGP_C3HHeJ_P0097603 Ace2 protein_coding protein_coding MGP_C3HHeJ_T0097604.1 MGP_C3HHeJ_G0035922.1 mouse_genomes_project X 162589228 162612848 + MGP_C3HHeJ_P0097604 Ace2 protein_coding protein_coding MGP_C3HHeJ_T0099749.1 MGP_C3HHeJ_G0037943.1 mouse_genomes_project X 15718527 15718700 - Gm23628 snRNA snRNA MGP_C3HHeJ_T0095683.1 MGP_C3HHeJ_G0035392.1 mouse_genomes_project X 48480575 48514686 + MGP_C3HHeJ_P0095683 Hprt protein_coding protein_coding MGP_C3HHeJ_T0096789.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104983888 105005884 + MGP_C3HHeJ_P0096789 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0096790.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104983888 104997098 + MGP_C3HHeJ_P0096790 Tbx22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096791.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104992436 105003757 + MGP_C3HHeJ_P0096791 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0096792.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104994887 105005887 + MGP_C3HHeJ_P0096792 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0096793.1 MGP_C3HHeJ_G0035691.1 mouse_genomes_project X 104994939 105004482 + MGP_C3HHeJ_P0096793 Tbx22 protein_coding protein_coding MGP_C3HHeJ_T0005525.1 MGP_C3HHeJ_G0004649.1 mouse_genomes_project X 93109380 93113091 + F630028O10Rik antisense antisense MGP_C3HHeJ_T0005526.1 MGP_C3HHeJ_G0004649.1 mouse_genomes_project X 93109420 93113091 + F630028O10Rik antisense antisense MGP_C3HHeJ_T0095298.1 MGP_C3HHeJ_G0035269.1 mouse_genomes_project X 12134082 12326839 - MGP_C3HHeJ_P0095298 Efhc2 protein_coding protein_coding MGP_C3HHeJ_T0016241.1 MGP_C3HHeJ_G0014345.1 mouse_genomes_project X 75302749 75302971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016246.1 MGP_C3HHeJ_G0014350.1 mouse_genomes_project X 76854683 76856825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096227.1 MGP_C3HHeJ_G0035528.1 mouse_genomes_project X 71218980 71236254 + MGP_C3HHeJ_P0096227 protein_coding protein_coding MGP_C3HHeJ_T0099786.1 MGP_C3HHeJ_G0037980.1 mouse_genomes_project X 103085339 103085451 + Gm23656 snRNA snRNA MGP_C3HHeJ_T0011692.1 MGP_C3HHeJ_G0009825.1 mouse_genomes_project X 167823774 167823943 + Gm27980 misc_RNA misc_RNA MGP_C3HHeJ_T0099763.1 MGP_C3HHeJ_G0037957.1 mouse_genomes_project X 52591456 52591562 + Gm23258 snRNA snRNA MGP_C3HHeJ_T0095651.1 MGP_C3HHeJ_G0035380.1 mouse_genomes_project X 45856374 45857373 - MGP_C3HHeJ_P0095651 Olfr1324 protein_coding protein_coding MGP_C3HHeJ_T0016154.1 MGP_C3HHeJ_G0014258.1 mouse_genomes_project X 57578657 57579092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097163.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139076275 139289301 + MGP_C3HHeJ_P0097163 Col4a5 protein_coding protein_coding MGP_C3HHeJ_T0097164.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139076300 139289247 + MGP_C3HHeJ_P0097164 Col4a5 protein_coding protein_coding MGP_C3HHeJ_T0097165.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139226192 139289301 + MGP_C3HHeJ_P0097165 Col4a5 protein_coding protein_coding MGP_C3HHeJ_T0097166.1 MGP_C3HHeJ_G0035819.1 mouse_genomes_project X 139254412 139271783 + Col4a5 protein_coding processed_transcript MGP_C3HHeJ_T0096711.1 MGP_C3HHeJ_G0035672.1 mouse_genomes_project X 102326790 102330340 + MGP_C3HHeJ_P0096711 Magee1 protein_coding protein_coding MGP_C3HHeJ_T0095659.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46550338 46640309 - MGP_C3HHeJ_P0095659 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095660.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553151 46640467 - MGP_C3HHeJ_P0095660 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095661.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553151 46581126 - MGP_C3HHeJ_P0095661 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095662.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553523 46561844 - Mbnl3 protein_coding retained_intron MGP_C3HHeJ_T0095663.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553560 46599155 - MGP_C3HHeJ_P0095663 Mbnl3 protein_coding protein_coding MGP_C3HHeJ_T0095664.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46553956 46573982 - Mbnl3 protein_coding processed_transcript MGP_C3HHeJ_T0095665.1 MGP_C3HHeJ_G0035384.1 mouse_genomes_project X 46598897 46641009 - Mbnl3 protein_coding processed_transcript MGP_C3HHeJ_T0016207.1 MGP_C3HHeJ_G0014311.1 mouse_genomes_project X 70791246 70791634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011039.1 MGP_C3HHeJ_G0009172.1 mouse_genomes_project X 33515559 33515639 + Mir3110 miRNA miRNA MGP_C3HHeJ_T0016535.1 MGP_C3HHeJ_G0014639.1 mouse_genomes_project X 136006257 136007500 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095611.1 MGP_C3HHeJ_G0035367.1 mouse_genomes_project X 43975668 43986607 + MGP_C3HHeJ_P0095611 Rab33a protein_coding protein_coding MGP_C3HHeJ_T0096869.1 MGP_C3HHeJ_G0035721.1 mouse_genomes_project X 115639672 115640733 - MGP_C3HHeJ_P0096869 protein_coding protein_coding MGP_C3HHeJ_T0101298.1 MGP_C3HHeJ_G0039393.1 mouse_genomes_project X 49599436 49599672 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096895.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815491 130920396 - MGP_C3HHeJ_P0096895 Pcdh19 protein_coding protein_coding MGP_C3HHeJ_T0096896.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815506 130919791 - MGP_C3HHeJ_P0096896 Pcdh19 protein_coding protein_coding MGP_C3HHeJ_T0096897.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815510 130918420 - MGP_C3HHeJ_P0096897 Pcdh19 protein_coding protein_coding MGP_C3HHeJ_T0096898.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130815511 130820643 - MGP_C3HHeJ_P0096898 Pcdh19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096899.1 MGP_C3HHeJ_G0035732.1 mouse_genomes_project X 130913886 130917518 - Pcdh19 protein_coding processed_transcript MGP_C3HHeJ_T0011664.1 MGP_C3HHeJ_G0009797.1 mouse_genomes_project X 64693487 64693615 + Gm27838 misc_RNA misc_RNA MGP_C3HHeJ_T0099813.1 MGP_C3HHeJ_G0038007.1 mouse_genomes_project X 161549274 161549381 - Gm22746 snRNA snRNA MGP_C3HHeJ_T0096258.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71486712 71722202 - MGP_C3HHeJ_P0096258 F8 protein_coding protein_coding MGP_C3HHeJ_T0096259.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71486716 71719927 - MGP_C3HHeJ_P0096259 F8 protein_coding protein_coding MGP_C3HHeJ_T0096260.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71672840 71722500 - MGP_C3HHeJ_P0096260 F8 protein_coding protein_coding MGP_C3HHeJ_T0096261.1 MGP_C3HHeJ_G0035535.1 mouse_genomes_project X 71690059 71722177 - MGP_C3HHeJ_P0096261 F8 protein_coding protein_coding MGP_C3HHeJ_T0016434.1 MGP_C3HHeJ_G0014538.1 mouse_genomes_project X 111357002 111357741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097580.1 MGP_C3HHeJ_G0035915.1 mouse_genomes_project X 162184392 162185583 - MGP_C3HHeJ_P0097580 Rnf138rt1 protein_coding protein_coding MGP_C3HHeJ_T0016563.1 MGP_C3HHeJ_G0014667.1 mouse_genomes_project X 139816583 139816841 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096303.1 MGP_C3HHeJ_G0035553.1 mouse_genomes_project X 74505877 74511403 + MGP_C3HHeJ_P0096303 protein_coding protein_coding MGP_C3HHeJ_T0016415.1 MGP_C3HHeJ_G0014519.1 mouse_genomes_project X 108754936 108758233 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016367.1 MGP_C3HHeJ_G0014471.1 mouse_genomes_project X 100624711 100625140 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011079.1 MGP_C3HHeJ_G0009212.1 mouse_genomes_project X 62900462 62900520 - Mir465d miRNA miRNA MGP_C3HHeJ_T0009289.1 MGP_C3HHeJ_G0007451.1 mouse_genomes_project X 32059927 32062816 - Mdrl lincRNA lincRNA MGP_C3HHeJ_T0097035.1 MGP_C3HHeJ_G0035776.1 mouse_genomes_project X 133570850 133580911 + MGP_C3HHeJ_P0097035 Tceal7 protein_coding protein_coding MGP_C3HHeJ_T0097036.1 MGP_C3HHeJ_G0035776.1 mouse_genomes_project X 133579564 133581624 + MGP_C3HHeJ_P0097036 Tceal7 protein_coding protein_coding MGP_C3HHeJ_T0096754.1 MGP_C3HHeJ_G0035680.1 mouse_genomes_project X 103407432 103424483 + MGP_C3HHeJ_P0096754 protein_coding protein_coding MGP_C3HHeJ_T0096755.1 MGP_C3HHeJ_G0035680.1 mouse_genomes_project X 103411972 103415125 + protein_coding retained_intron MGP_C3HHeJ_T0016222.1 MGP_C3HHeJ_G0014326.1 mouse_genomes_project X 73005704 73006419 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016451.1 MGP_C3HHeJ_G0014555.1 mouse_genomes_project X 114809218 114810207 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016091.1 MGP_C3HHeJ_G0014195.1 mouse_genomes_project X 41544206 41545739 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097391.1 MGP_C3HHeJ_G0035862.1 mouse_genomes_project X 150569664 150570300 + MGP_C3HHeJ_P0097391 Cldn34a protein_coding protein_coding MGP_C3HHeJ_T0099804.1 MGP_C3HHeJ_G0037998.1 mouse_genomes_project X 144005381 144005441 - Gm26151 snRNA snRNA MGP_C3HHeJ_T0097557.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161169077 161201973 - Txlng protein_coding retained_intron MGP_C3HHeJ_T0097558.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161169077 161218959 - MGP_C3HHeJ_P0097558 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097559.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161169077 161218959 - MGP_C3HHeJ_P0097559 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097560.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161179076 161218959 - MGP_C3HHeJ_P0097560 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097561.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161180761 161218845 - MGP_C3HHeJ_P0097561 Txlng protein_coding protein_coding MGP_C3HHeJ_T0097562.1 MGP_C3HHeJ_G0035910.1 mouse_genomes_project X 161217564 161218959 - Txlng protein_coding processed_transcript MGP_C3HHeJ_T0095794.1 MGP_C3HHeJ_G0035434.1 mouse_genomes_project X 58456550 58457372 + MGP_C3HHeJ_P0095794 4931400O07Rik protein_coding protein_coding MGP_C3HHeJ_T0096305.1 MGP_C3HHeJ_G0035555.1 mouse_genomes_project X 74674146 74675632 + MGP_C3HHeJ_P0096305 4930480E11Rik protein_coding protein_coding MGP_C3HHeJ_T0016173.1 MGP_C3HHeJ_G0014277.1 mouse_genomes_project X 62162187 62162445 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095893.1 MGP_C3HHeJ_G0035466.1 mouse_genomes_project X 68570963 68575952 - MGP_C3HHeJ_P0095893 Magea10 protein_coding protein_coding MGP_C3HHeJ_T0016346.1 MGP_C3HHeJ_G0014450.1 mouse_genomes_project X 98143904 98144173 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097109.1 MGP_C3HHeJ_G0035804.1 mouse_genomes_project X 137327591 137330396 - MGP_C3HHeJ_P0097109 Ripply1 protein_coding protein_coding MGP_C3HHeJ_T0097459.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960387 156013936 + MGP_C3HHeJ_P0097459 Smpx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097460.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960387 155964490 + MGP_C3HHeJ_P0097460 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097461.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960450 156013934 + MGP_C3HHeJ_P0097461 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097462.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960604 156013934 + MGP_C3HHeJ_P0097462 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097463.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155960737 156013559 + MGP_C3HHeJ_P0097463 Smpx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097464.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155964075 156013586 + MGP_C3HHeJ_P0097464 Smpx protein_coding protein_coding MGP_C3HHeJ_T0097465.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155975750 156013556 + Smpx protein_coding retained_intron MGP_C3HHeJ_T0097466.1 MGP_C3HHeJ_G0035889.1 mouse_genomes_project X 155981867 156013628 + Smpx protein_coding retained_intron MGP_C3HHeJ_T0095658.1 MGP_C3HHeJ_G0035383.1 mouse_genomes_project X 46427506 46441581 - MGP_C3HHeJ_P0095658 Rap2c protein_coding protein_coding MGP_C3HHeJ_T0097565.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292598 161380104 + MGP_C3HHeJ_P0097565 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097566.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292605 161314077 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097567.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292605 161313752 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097568.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292965 161429536 + MGP_C3HHeJ_P0097568 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097569.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161292992 161429719 + MGP_C3HHeJ_P0097569 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097570.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293129 161429712 + MGP_C3HHeJ_P0097570 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097571.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293145 161294931 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097572.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293230 161429536 + MGP_C3HHeJ_P0097572 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097573.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161293531 161314948 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097574.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161322194 161331074 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097575.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161335532 161376769 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097576.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161335913 161336203 + Ctps2 protein_coding processed_transcript MGP_C3HHeJ_T0097577.1 MGP_C3HHeJ_G0035912.1 mouse_genomes_project X 161336019 161431760 + MGP_C3HHeJ_P0097577 Ctps2 protein_coding protein_coding MGP_C3HHeJ_T0097027.1 MGP_C3HHeJ_G0035773.1 mouse_genomes_project X 133490352 133490962 + MGP_C3HHeJ_P0097027 Bex4 protein_coding protein_coding MGP_C3HHeJ_T0016516.1 MGP_C3HHeJ_G0014620.1 mouse_genomes_project X 133930967 133932455 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097410.1 MGP_C3HHeJ_G0035870.1 mouse_genomes_project X 151577323 151580668 + MGP_C3HHeJ_P0097410 Ubqln2 protein_coding protein_coding MGP_C3HHeJ_T0098223.1 MGP_C3HHeJ_G0036435.1 mouse_genomes_project X 67255669 67255787 + n-R5s8 rRNA rRNA MGP_C3HHeJ_T0016108.1 MGP_C3HHeJ_G0014212.1 mouse_genomes_project X 46653357 46654457 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016644.1 MGP_C3HHeJ_G0014748.1 mouse_genomes_project X 156434604 156435688 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016626.1 MGP_C3HHeJ_G0014730.1 mouse_genomes_project X 153400844 153401474 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096865.1 MGP_C3HHeJ_G0035717.1 mouse_genomes_project X 112055462 112056391 + MGP_C3HHeJ_P0096865 Ube2dnl2 protein_coding protein_coding MGP_C3HHeJ_T0018376.1 MGP_C3HHeJ_G0015529.1 mouse_genomes_project X 2789966 2807682 + processed_transcript processed_transcript MGP_C3HHeJ_T0016256.1 MGP_C3HHeJ_G0014360.1 mouse_genomes_project X 81600115 81600318 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101295.1 MGP_C3HHeJ_G0039391.1 mouse_genomes_project X 17601262 17602025 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101296.1 MGP_C3HHeJ_G0039391.1 mouse_genomes_project X 17601359 17601968 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0015985.1 MGP_C3HHeJ_G0014089.1 mouse_genomes_project X 3928660 3929492 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016593.1 MGP_C3HHeJ_G0014697.1 mouse_genomes_project X 144316430 144317638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095138.1 MGP_C3HHeJ_G0035218.1 mouse_genomes_project X 2636182 2645117 - MGP_C3HHeJ_P0095138 Gata1 protein_coding protein_coding MGP_C3HHeJ_T0095139.1 MGP_C3HHeJ_G0035218.1 mouse_genomes_project X 2639370 2656106 - MGP_C3HHeJ_P0095139 Gata1 protein_coding protein_coding MGP_C3HHeJ_T0095140.1 MGP_C3HHeJ_G0035218.1 mouse_genomes_project X 2639959 2641161 - MGP_C3HHeJ_P0095140 Gata1 protein_coding protein_coding MGP_C3HHeJ_T0016211.1 MGP_C3HHeJ_G0014315.1 mouse_genomes_project X 71057655 71058039 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009275.1 MGP_C3HHeJ_G0007443.1 mouse_genomes_project X 7257788 7272985 - Gm14635 lincRNA lincRNA MGP_C3HHeJ_T0009276.1 MGP_C3HHeJ_G0007443.1 mouse_genomes_project X 7258643 7263229 - Gm14635 lincRNA lincRNA MGP_C3HHeJ_T0097684.1 MGP_C3HHeJ_G0035945.1 mouse_genomes_project X 167166002 167188655 - MGP_C3HHeJ_P0097684 Msl3 protein_coding protein_coding MGP_C3HHeJ_T0097685.1 MGP_C3HHeJ_G0035945.1 mouse_genomes_project X 167168864 167173758 - Msl3 protein_coding retained_intron MGP_C3HHeJ_T0097686.1 MGP_C3HHeJ_G0035945.1 mouse_genomes_project X 167173429 167187345 - Msl3 protein_coding retained_intron MGP_C3HHeJ_T0096817.1 MGP_C3HHeJ_G0035703.1 mouse_genomes_project X 108476323 108476677 + MGP_C3HHeJ_P0096817 Gm10112 protein_coding protein_coding MGP_C3HHeJ_T0016536.1 MGP_C3HHeJ_G0014640.1 mouse_genomes_project X 136232336 136234985 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097156.1 MGP_C3HHeJ_G0035816.1 mouse_genomes_project X 138524916 138532474 - MGP_C3HHeJ_P0097156 Psmd10 protein_coding protein_coding MGP_C3HHeJ_T0095641.1 MGP_C3HHeJ_G0035375.1 mouse_genomes_project X 45128214 45129174 + MGP_C3HHeJ_P0095641 Olfr1320 protein_coding protein_coding MGP_C3HHeJ_T0016313.1 MGP_C3HHeJ_G0014417.1 mouse_genomes_project X 91336386 91336795 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095550.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880226 37901536 + Sh2d1a protein_coding processed_transcript MGP_C3HHeJ_T0095551.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880270 37906995 + MGP_C3HHeJ_P0095551 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095552.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880335 37899828 + MGP_C3HHeJ_P0095552 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095553.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880399 37899828 + MGP_C3HHeJ_P0095553 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095554.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37880505 37899607 + MGP_C3HHeJ_P0095554 Sh2d1a protein_coding protein_coding MGP_C3HHeJ_T0095555.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37892040 37899705 + Sh2d1a protein_coding processed_transcript MGP_C3HHeJ_T0095556.1 MGP_C3HHeJ_G0035350.1 mouse_genomes_project X 37904253 37906999 + Sh2d1a protein_coding retained_intron MGP_C3HHeJ_T0016344.1 MGP_C3HHeJ_G0014448.1 mouse_genomes_project X 97476520 97476920 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096369.1 MGP_C3HHeJ_G0035574.1 mouse_genomes_project X 87403698 87404691 + MGP_C3HHeJ_P0096369 Gm44 protein_coding protein_coding MGP_C3HHeJ_T0101019.1 MGP_C3HHeJ_G0039213.1 mouse_genomes_project X 32338948 32339079 - Snora69 snoRNA snoRNA MGP_C3HHeJ_T0009313.1 MGP_C3HHeJ_G0007470.1 mouse_genomes_project X 93835859 93836674 - BC061195 lincRNA lincRNA MGP_C3HHeJ_T0011659.1 MGP_C3HHeJ_G0009792.1 mouse_genomes_project X 32327501 32327772 - Gm24809 misc_RNA misc_RNA MGP_C3HHeJ_T0016294.1 MGP_C3HHeJ_G0014398.1 mouse_genomes_project X 88570443 88574003 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095498.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33935746 33950081 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0095499.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33935823 33951674 + MGP_C3HHeJ_P0095499 Mcts1 protein_coding protein_coding MGP_C3HHeJ_T0095500.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33936467 33943169 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0095501.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33936552 33951550 + MGP_C3HHeJ_P0095501 Mcts1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095502.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33946970 33951674 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0095503.1 MGP_C3HHeJ_G0035340.1 mouse_genomes_project X 33948050 33951648 + Mcts1 protein_coding processed_transcript MGP_C3HHeJ_T0016132.1 MGP_C3HHeJ_G0014236.1 mouse_genomes_project X 53629188 53630175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095184.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2952813 2967188 - MGP_C3HHeJ_P0095184 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095185.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2954548 2967092 - MGP_C3HHeJ_P0095185 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095186.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2954548 2967177 - MGP_C3HHeJ_P0095186 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095187.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2959379 2966990 - Ftsj1 protein_coding retained_intron MGP_C3HHeJ_T0095188.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2959676 2961086 - MGP_C3HHeJ_P0095188 Ftsj1 protein_coding protein_coding MGP_C3HHeJ_T0095189.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2959707 2960567 - Ftsj1 protein_coding processed_transcript MGP_C3HHeJ_T0095190.1 MGP_C3HHeJ_G0035227.1 mouse_genomes_project X 2963251 2967145 - Ftsj1 protein_coding retained_intron MGP_C3HHeJ_T0095762.1 MGP_C3HHeJ_G0035422.1 mouse_genomes_project X 53360444 53367515 - MGP_C3HHeJ_P0095762 Gpr101 protein_coding protein_coding MGP_C3HHeJ_T0102342.1 MGP_C3HHeJ_G0040305.1 mouse_genomes_project X 41947436 41948207 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015961.1 MGP_C3HHeJ_G0014065.1 mouse_genomes_project X 300096 302355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095040.1 MGP_C3HHeJ_G0035199.1 mouse_genomes_project X 2313679 2316878 - MGP_C3HHeJ_P0095040 Plp2 protein_coding protein_coding MGP_C3HHeJ_T0095041.1 MGP_C3HHeJ_G0035199.1 mouse_genomes_project X 2314817 2316801 - Plp2 protein_coding retained_intron MGP_C3HHeJ_T0016180.1 MGP_C3HHeJ_G0014284.1 mouse_genomes_project X 63755167 63755730 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095994.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70147386 70167924 - MGP_C3HHeJ_P0095994 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0095999.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150296 70167918 - MGP_C3HHeJ_P0095999 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096000.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150302 70167884 - MGP_C3HHeJ_P0096000 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096001.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096002.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096003.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096004.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096005.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096006.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - MGP_C3HHeJ_P0096006 Arhgap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096007.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150476 70167859 - MGP_C3HHeJ_P0096007 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096008.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150482 70167859 - MGP_C3HHeJ_P0096008 Arhgap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096009.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70150620 70167817 - MGP_C3HHeJ_P0096009 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096010.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70152355 70153371 - Arhgap4 protein_coding processed_transcript MGP_C3HHeJ_T0096011.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70152758 70154011 - MGP_C3HHeJ_P0096011 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096012.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70152815 70155571 - MGP_C3HHeJ_P0096012 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096013.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70155257 70179757 - Arhgap4 protein_coding retained_intron MGP_C3HHeJ_T0096014.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70155261 70156683 - Arhgap4 protein_coding processed_transcript MGP_C3HHeJ_T0096015.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70156053 70162246 - MGP_C3HHeJ_P0096015 Arhgap4 protein_coding protein_coding MGP_C3HHeJ_T0096016.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70162974 70167886 - Arhgap4 protein_coding processed_transcript MGP_C3HHeJ_T0096017.1 MGP_C3HHeJ_G0035495.1 mouse_genomes_project X 70163367 70167881 - MGP_C3HHeJ_P0096017 Arhgap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016189.1 MGP_C3HHeJ_G0014293.1 mouse_genomes_project X 64965002 64965858 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101040.1 MGP_C3HHeJ_G0039234.1 mouse_genomes_project X 101224274 101224412 - Gm22266 snoRNA snoRNA MGP_C3HHeJ_T0098232.1 MGP_C3HHeJ_G0036444.1 mouse_genomes_project X 153776145 153776264 + n-R5s16 rRNA rRNA MGP_C3HHeJ_T0005531.1 MGP_C3HHeJ_G0004653.1 mouse_genomes_project X 100538683 100593905 + Tsix antisense antisense MGP_C3HHeJ_T0009344.1 MGP_C3HHeJ_G0007488.1 mouse_genomes_project X 148230257 148250927 - Gm15104 lincRNA lincRNA MGP_C3HHeJ_T0009345.1 MGP_C3HHeJ_G0007488.1 mouse_genomes_project X 148230607 148231021 - Gm15104 lincRNA lincRNA MGP_C3HHeJ_T0009340.1 MGP_C3HHeJ_G0007484.1 mouse_genomes_project X 130920306 130938759 + Gm26851 lincRNA lincRNA MGP_C3HHeJ_T0095789.1 MGP_C3HHeJ_G0035430.1 mouse_genomes_project X 56829518 56831583 - MGP_C3HHeJ_P0095789 Sox3 protein_coding protein_coding MGP_C3HHeJ_T0005508.1 MGP_C3HHeJ_G0004634.1 mouse_genomes_project X 48037258 48081437 + A630012P03Rik antisense antisense MGP_C3HHeJ_T0005509.1 MGP_C3HHeJ_G0004634.1 mouse_genomes_project X 48037258 48081437 + A630012P03Rik antisense antisense MGP_C3HHeJ_T0016219.1 MGP_C3HHeJ_G0014323.1 mouse_genomes_project X 72367582 72368004 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099753.1 MGP_C3HHeJ_G0037947.1 mouse_genomes_project X 31596286 31596390 + Gm25047 snRNA snRNA MGP_C3HHeJ_T0011109.1 MGP_C3HHeJ_G0009242.1 mouse_genomes_project X 102550453 102550541 - Mir384 miRNA miRNA MGP_C3HHeJ_T0101042.1 MGP_C3HHeJ_G0039236.1 mouse_genomes_project X 111065666 111065790 - Gm23985 snoRNA snoRNA MGP_C3HHeJ_T0095696.1 MGP_C3HHeJ_G0035398.1 mouse_genomes_project X 49107348 49110325 - MGP_C3HHeJ_P0095696 Gm14597 protein_coding protein_coding MGP_C3HHeJ_T0016569.1 MGP_C3HHeJ_G0014673.1 mouse_genomes_project X 140397384 140397847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016312.1 MGP_C3HHeJ_G0014416.1 mouse_genomes_project X 91325778 91326385 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095463.1 MGP_C3HHeJ_G0035323.1 mouse_genomes_project X 32456498 32457721 + MGP_C3HHeJ_P0095463 Rnf113a1 protein_coding protein_coding MGP_C3HHeJ_T0097203.1 MGP_C3HHeJ_G0035832.1 mouse_genomes_project X 141440534 141466319 - MGP_C3HHeJ_P0097203 Capn6 protein_coding protein_coding MGP_C3HHeJ_T0097204.1 MGP_C3HHeJ_G0035832.1 mouse_genomes_project X 141454970 141466237 - Capn6 protein_coding retained_intron MGP_C3HHeJ_T0096455.1 MGP_C3HHeJ_G0035600.1 mouse_genomes_project X 92952707 93031693 + MGP_C3HHeJ_P0096455 Msn protein_coding protein_coding MGP_C3HHeJ_T0096456.1 MGP_C3HHeJ_G0035600.1 mouse_genomes_project X 92952722 93013510 + Msn protein_coding processed_transcript MGP_C3HHeJ_T0096457.1 MGP_C3HHeJ_G0035600.1 mouse_genomes_project X 92952762 93011430 + Msn protein_coding processed_transcript MGP_C3HHeJ_T0095452.1 MGP_C3HHeJ_G0035317.1 mouse_genomes_project X 32301643 32303217 + MGP_C3HHeJ_P0095452 Sowahd protein_coding protein_coding MGP_C3HHeJ_T0096233.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404381 71418225 + MGP_C3HHeJ_P0096233 Dkc1 protein_coding protein_coding MGP_C3HHeJ_T0096234.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404580 71411072 + MGP_C3HHeJ_P0096234 Dkc1 protein_coding protein_coding MGP_C3HHeJ_T0096235.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404613 71407415 + MGP_C3HHeJ_P0096235 Dkc1 protein_coding protein_coding MGP_C3HHeJ_T0096236.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404626 71407325 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0096237.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404628 71407475 + Dkc1 protein_coding processed_transcript MGP_C3HHeJ_T0096238.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71404642 71410994 + MGP_C3HHeJ_P0096238 Dkc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096239.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71405073 71407347 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0096240.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71408445 71415659 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0096241.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71408580 71416691 + MGP_C3HHeJ_P0096241 Dkc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096242.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71408786 71414166 + Dkc1 protein_coding processed_transcript MGP_C3HHeJ_T0096243.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71409472 71414214 + Dkc1 protein_coding processed_transcript MGP_C3HHeJ_T0096244.1 MGP_C3HHeJ_G0035532.1 mouse_genomes_project X 71414396 71416724 + Dkc1 protein_coding retained_intron MGP_C3HHeJ_T0016337.1 MGP_C3HHeJ_G0014441.1 mouse_genomes_project X 95812208 95812603 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096360.1 MGP_C3HHeJ_G0035569.1 mouse_genomes_project X 82643011 82649157 - MGP_C3HHeJ_P0096360 Mageb4 protein_coding protein_coding MGP_C3HHeJ_T0096361.1 MGP_C3HHeJ_G0035569.1 mouse_genomes_project X 82643013 82649157 - MGP_C3HHeJ_P0096361 Mageb4 protein_coding protein_coding MGP_C3HHeJ_T0095206.1 MGP_C3HHeJ_G0035240.1 mouse_genomes_project X 4064742 4132243 + MGP_C3HHeJ_P0095206 Lancl3 protein_coding protein_coding MGP_C3HHeJ_T0095218.1 MGP_C3HHeJ_G0035245.1 mouse_genomes_project X 4710286 4710867 + MGP_C3HHeJ_P0095218 Hypm protein_coding protein_coding MGP_C3HHeJ_T0096598.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98334209 - MGP_C3HHeJ_P0096598 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096599.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98334076 - MGP_C3HHeJ_P0096599 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096600.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98333159 - MGP_C3HHeJ_P0096600 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096601.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98317744 98333275 - MGP_C3HHeJ_P0096601 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096602.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98319339 98323095 - Zmym3 protein_coding processed_transcript MGP_C3HHeJ_T0096603.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98326604 98328280 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096604.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98327561 98330838 - Zmym3 protein_coding processed_transcript MGP_C3HHeJ_T0096605.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98327869 98328527 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096606.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328289 98330737 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096607.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328290 98333170 - MGP_C3HHeJ_P0096607 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096608.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328293 98334045 - MGP_C3HHeJ_P0096608 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096609.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328293 98333202 - MGP_C3HHeJ_P0096609 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096610.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328298 98333577 - MGP_C3HHeJ_P0096610 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096611.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328318 98333725 - MGP_C3HHeJ_P0096611 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0096612.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98328375 98330734 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096613.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98329547 98333190 - Zmym3 protein_coding processed_transcript MGP_C3HHeJ_T0096614.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98329634 98331051 - Zmym3 protein_coding retained_intron MGP_C3HHeJ_T0096615.1 MGP_C3HHeJ_G0035637.1 mouse_genomes_project X 98329743 98333221 - MGP_C3HHeJ_P0096615 Zmym3 protein_coding protein_coding MGP_C3HHeJ_T0016047.1 MGP_C3HHeJ_G0014151.1 mouse_genomes_project X 19008672 19009888 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095792.1 MGP_C3HHeJ_G0035433.1 mouse_genomes_project X 58254957 58263538 + MGP_C3HHeJ_P0095792 4933402E13Rik protein_coding protein_coding MGP_C3HHeJ_T0095793.1 MGP_C3HHeJ_G0035433.1 mouse_genomes_project X 58258601 58263538 + MGP_C3HHeJ_P0095793 4933402E13Rik protein_coding protein_coding MGP_C3HHeJ_T0101303.1 MGP_C3HHeJ_G0039396.1 mouse_genomes_project X 100635628 100639553 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101304.1 MGP_C3HHeJ_G0039396.1 mouse_genomes_project X 100635637 100639975 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0016188.1 MGP_C3HHeJ_G0014292.1 mouse_genomes_project X 64818926 64819154 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096377.1 MGP_C3HHeJ_G0035581.1 mouse_genomes_project X 90017345 90019283 + Arx protein_coding retained_intron MGP_C3HHeJ_T0096378.1 MGP_C3HHeJ_G0035581.1 mouse_genomes_project X 90017396 90029220 + MGP_C3HHeJ_P0096378 Arx protein_coding protein_coding MGP_C3HHeJ_T0096379.1 MGP_C3HHeJ_G0035581.1 mouse_genomes_project X 90017410 90028925 + MGP_C3HHeJ_P0096379 Arx protein_coding protein_coding MGP_C3HHeJ_T0097187.1 MGP_C3HHeJ_G0035829.1 mouse_genomes_project X 140735286 140739990 + MGP_C3HHeJ_P0097187 Rgag1 protein_coding protein_coding MGP_C3HHeJ_T0099741.1 MGP_C3HHeJ_G0037935.1 mouse_genomes_project X 4186818 4186977 + Gm25481 snRNA snRNA MGP_C3HHeJ_T0096523.1 MGP_C3HHeJ_G0035618.1 mouse_genomes_project X 97384338 97407571 + MGP_C3HHeJ_P0096523 Igbp1 protein_coding protein_coding MGP_C3HHeJ_T0096524.1 MGP_C3HHeJ_G0035618.1 mouse_genomes_project X 97384402 97389450 + Igbp1 protein_coding retained_intron MGP_C3HHeJ_T0095198.1 MGP_C3HHeJ_G0035232.1 mouse_genomes_project X 3167434 3402251 + MGP_C3HHeJ_P0095198 protein_coding protein_coding MGP_C3HHeJ_T0016345.1 MGP_C3HHeJ_G0014449.1 mouse_genomes_project X 97951553 97951836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016619.1 MGP_C3HHeJ_G0014723.1 mouse_genomes_project X 152340064 152340663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095288.1 MGP_C3HHeJ_G0035263.1 mouse_genomes_project X 9189044 9189565 + MGP_C3HHeJ_P0095288 Gm14501 protein_coding protein_coding MGP_C3HHeJ_T0095173.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2891645 2904089 - MGP_C3HHeJ_P0095173 Ebp protein_coding protein_coding MGP_C3HHeJ_T0095174.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2891647 2893491 - Ebp protein_coding retained_intron MGP_C3HHeJ_T0095175.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2893064 2903977 - MGP_C3HHeJ_P0095175 Ebp protein_coding protein_coding MGP_C3HHeJ_T0095176.1 MGP_C3HHeJ_G0035225.1 mouse_genomes_project X 2900385 2903475 - Ebp protein_coding retained_intron MGP_C3HHeJ_T0095619.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082461 44090085 + Slc25a14 protein_coding processed_transcript MGP_C3HHeJ_T0095620.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082626 44121075 + MGP_C3HHeJ_P0095620 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0095621.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082626 44121075 + MGP_C3HHeJ_P0095621 Slc25a14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095622.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082626 44121075 + MGP_C3HHeJ_P0095622 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0095623.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082797 44111113 + Slc25a14 protein_coding processed_transcript MGP_C3HHeJ_T0095624.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082813 44121075 + MGP_C3HHeJ_P0095624 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0095625.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44082868 44094319 + Slc25a14 protein_coding retained_intron MGP_C3HHeJ_T0095626.1 MGP_C3HHeJ_G0035369.1 mouse_genomes_project X 44083010 44121073 + MGP_C3HHeJ_P0095626 Slc25a14 protein_coding protein_coding MGP_C3HHeJ_T0101293.1 MGP_C3HHeJ_G0039390.1 mouse_genomes_project X 16492069 16501535 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101294.1 MGP_C3HHeJ_G0039390.1 mouse_genomes_project X 16492144 16494227 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096796.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105103363 105193103 + MGP_C3HHeJ_P0096796 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0096797.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105127250 105190753 + MGP_C3HHeJ_P0096797 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0096798.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105127345 105193103 + MGP_C3HHeJ_P0096798 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0096799.1 MGP_C3HHeJ_G0035693.1 mouse_genomes_project X 105127345 105190594 + MGP_C3HHeJ_P0096799 Fam46d protein_coding protein_coding MGP_C3HHeJ_T0016164.1 MGP_C3HHeJ_G0014268.1 mouse_genomes_project X 59087022 59087935 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011037.1 MGP_C3HHeJ_G0009170.1 mouse_genomes_project X 19117000 19117102 + Gm25299 miRNA miRNA MGP_C3HHeJ_T0097008.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133083420 + Gprasp1 protein_coding processed_transcript MGP_C3HHeJ_T0097010.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133129581 + MGP_C3HHeJ_P0097010 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0097011.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133129581 + MGP_C3HHeJ_P0097011 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0097012.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064407 133129581 + MGP_C3HHeJ_P0097012 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0097013.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133064409 133101076 + Gprasp1 protein_coding processed_transcript MGP_C3HHeJ_T0097015.1 MGP_C3HHeJ_G0035767.1 mouse_genomes_project X 133120370 133129573 + MGP_C3HHeJ_P0097015 Gprasp1 protein_coding protein_coding MGP_C3HHeJ_T0096887.1 MGP_C3HHeJ_G0035730.1 mouse_genomes_project X 125528538 125530402 + MGP_C3HHeJ_P0096887 Rbm31y protein_coding protein_coding MGP_C3HHeJ_T0102341.1 MGP_C3HHeJ_G0040304.1 mouse_genomes_project X 33702751 33704434 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011091.1 MGP_C3HHeJ_G0009224.1 mouse_genomes_project X 70283497 70283568 - Mir5132 miRNA miRNA MGP_C3HHeJ_T0095678.1 MGP_C3HHeJ_G0035390.1 mouse_genomes_project X 48269204 48277479 + MGP_C3HHeJ_P0095678 Ccdc160 protein_coding protein_coding MGP_C3HHeJ_T0009358.1 MGP_C3HHeJ_G0007495.1 mouse_genomes_project X 165067744 165071184 - Gm15226 lincRNA lincRNA MGP_C3HHeJ_T0098237.1 MGP_C3HHeJ_G0036449.1 mouse_genomes_project X 166408889 166408999 + Gm24772 rRNA rRNA MGP_C3HHeJ_T0016202.1 MGP_C3HHeJ_G0014306.1 mouse_genomes_project X 69535371 69535803 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016433.1 MGP_C3HHeJ_G0014537.1 mouse_genomes_project X 111232520 111234218 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016463.1 MGP_C3HHeJ_G0014567.1 mouse_genomes_project X 117311250 117311705 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095904.1 MGP_C3HHeJ_G0035471.1 mouse_genomes_project X 69178491 69225461 + MGP_C3HHeJ_P0095904 Zfp185 protein_coding protein_coding MGP_C3HHeJ_T0095905.1 MGP_C3HHeJ_G0035471.1 mouse_genomes_project X 69178512 69225461 + MGP_C3HHeJ_P0095905 Zfp185 protein_coding protein_coding MGP_C3HHeJ_T0095906.1 MGP_C3HHeJ_G0035471.1 mouse_genomes_project X 69179405 69188722 + MGP_C3HHeJ_P0095906 Zfp185 protein_coding protein_coding MGP_C3HHeJ_T0099760.1 MGP_C3HHeJ_G0037954.1 mouse_genomes_project X 43745437 43745541 + Gm22528 snRNA snRNA MGP_C3HHeJ_T0016191.1 MGP_C3HHeJ_G0014295.1 mouse_genomes_project X 66496807 66497731 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095673.1 MGP_C3HHeJ_G0035387.1 mouse_genomes_project X 47420082 47424159 - MGP_C3HHeJ_P0095673 1700080O16Rik protein_coding protein_coding MGP_C3HHeJ_T0095674.1 MGP_C3HHeJ_G0035387.1 mouse_genomes_project X 47420279 47422435 - MGP_C3HHeJ_P0095674 1700080O16Rik protein_coding protein_coding MGP_C3HHeJ_T0005512.1 MGP_C3HHeJ_G0004637.1 mouse_genomes_project X 56481200 56744839 + antisense antisense MGP_C3HHeJ_T0095297.1 MGP_C3HHeJ_G0035268.1 mouse_genomes_project X 11873086 11901360 - MGP_C3HHeJ_P0095297 Ndp protein_coding protein_coding MGP_C3HHeJ_T0009280.1 MGP_C3HHeJ_G0007446.1 mouse_genomes_project X 10930125 10941001 - Drr1 lincRNA lincRNA MGP_C3HHeJ_T0009281.1 MGP_C3HHeJ_G0007446.1 mouse_genomes_project X 10930125 10932800 - Drr1 lincRNA lincRNA MGP_C3HHeJ_T0018454.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150347354 150425937 + processed_transcript processed_transcript MGP_C3HHeJ_T0018455.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150347809 150425937 + processed_transcript processed_transcript MGP_C3HHeJ_T0018456.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150347809 150385875 + processed_transcript processed_transcript MGP_C3HHeJ_T0018457.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150348623 150366601 + processed_transcript processed_transcript MGP_C3HHeJ_T0018458.1 MGP_C3HHeJ_G0015553.1 mouse_genomes_project X 150385425 150425937 + processed_transcript processed_transcript MGP_C3HHeJ_T0016160.1 MGP_C3HHeJ_G0014264.1 mouse_genomes_project X 58167573 58168075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009330.1 MGP_C3HHeJ_G0007477.1 mouse_genomes_project X 102021937 102030894 + lincRNA lincRNA MGP_C3HHeJ_T0016298.1 MGP_C3HHeJ_G0014402.1 mouse_genomes_project X 89145210 89145386 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016162.1 MGP_C3HHeJ_G0014266.1 mouse_genomes_project X 58349045 58349767 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016549.1 MGP_C3HHeJ_G0014653.1 mouse_genomes_project X 138897543 138897906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098233.1 MGP_C3HHeJ_G0036445.1 mouse_genomes_project X 155888639 155888733 - Gm23381 rRNA rRNA MGP_C3HHeJ_T0016371.1 MGP_C3HHeJ_G0014475.1 mouse_genomes_project X 100812053 100812372 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016049.1 MGP_C3HHeJ_G0014153.1 mouse_genomes_project X 31441563 31441938 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016168.1 MGP_C3HHeJ_G0014272.1 mouse_genomes_project X 60893844 60894702 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005503.1 MGP_C3HHeJ_G0004629.1 mouse_genomes_project X 32059927 32062831 + Gm14549 antisense antisense MGP_C3HHeJ_T0101314.1 MGP_C3HHeJ_G0039403.1 mouse_genomes_project X 134501522 134501818 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0094990.1 MGP_C3HHeJ_G0035185.1 mouse_genomes_project X 791273 795684 - MGP_C3HHeJ_P0094990 Nudt10 protein_coding protein_coding MGP_C3HHeJ_T0099768.1 MGP_C3HHeJ_G0037962.1 mouse_genomes_project X 57902341 57902448 + Gm25412 snRNA snRNA MGP_C3HHeJ_T0005511.1 MGP_C3HHeJ_G0004636.1 mouse_genomes_project X 53053378 53058321 + Gm14718 antisense antisense MGP_C3HHeJ_T0016460.1 MGP_C3HHeJ_G0014564.1 mouse_genomes_project X 116517840 116518578 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011030.1 MGP_C3HHeJ_G0009163.1 mouse_genomes_project X 7803934 7804028 - Gm25063 miRNA miRNA MGP_C3HHeJ_T0016390.1 MGP_C3HHeJ_G0014494.1 mouse_genomes_project X 102922732 102923573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096688.1 MGP_C3HHeJ_G0035658.1 mouse_genomes_project X 100312743 100314105 + MGP_C3HHeJ_P0096688 1700029P11Rik protein_coding protein_coding MGP_C3HHeJ_T0102359.1 MGP_C3HHeJ_G0040322.1 mouse_genomes_project X 82804329 82805370 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016417.1 MGP_C3HHeJ_G0014521.1 mouse_genomes_project X 109048204 109048753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016557.1 MGP_C3HHeJ_G0014661.1 mouse_genomes_project X 139481259 139481530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099792.1 MGP_C3HHeJ_G0037986.1 mouse_genomes_project X 110498936 110499062 - Gm24831 snRNA snRNA MGP_C3HHeJ_T0097264.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148472123 148495647 + MGP_C3HHeJ_P0097264 Alas2 protein_coding protein_coding MGP_C3HHeJ_T0097265.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148472207 148495631 + MGP_C3HHeJ_P0097265 Alas2 protein_coding protein_coding MGP_C3HHeJ_T0097266.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148478785 148482412 + Alas2 protein_coding retained_intron MGP_C3HHeJ_T0097267.1 MGP_C3HHeJ_G0035844.1 mouse_genomes_project X 148491398 148495631 + Alas2 protein_coding processed_transcript MGP_C3HHeJ_T0099779.1 MGP_C3HHeJ_G0037973.1 mouse_genomes_project X 97899828 97899891 + Gm24577 snRNA snRNA MGP_C3HHeJ_T0096226.1 MGP_C3HHeJ_G0035527.1 mouse_genomes_project X 71218916 71236254 + MGP_C3HHeJ_P0096226 protein_coding protein_coding MGP_C3HHeJ_T0097100.1 MGP_C3HHeJ_G0035800.1 mouse_genomes_project X 136996578 137073983 + MGP_C3HHeJ_P0097100 D330045A20Rik protein_coding protein_coding MGP_C3HHeJ_T0097101.1 MGP_C3HHeJ_G0035800.1 mouse_genomes_project X 136996582 137014089 + D330045A20Rik protein_coding processed_transcript MGP_C3HHeJ_T0097102.1 MGP_C3HHeJ_G0035800.1 mouse_genomes_project X 136996582 137073983 + MGP_C3HHeJ_P0097102 D330045A20Rik protein_coding protein_coding MGP_C3HHeJ_T0016000.1 MGP_C3HHeJ_G0014104.1 mouse_genomes_project X 7597471 7597579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095434.1 MGP_C3HHeJ_G0035312.1 mouse_genomes_project X 32040484 32043680 + MGP_C3HHeJ_P0095434 Slc25a5 protein_coding protein_coding MGP_C3HHeJ_T0095435.1 MGP_C3HHeJ_G0035312.1 mouse_genomes_project X 32042151 32043426 + Slc25a5 protein_coding retained_intron MGP_C3HHeJ_T0016051.1 MGP_C3HHeJ_G0014155.1 mouse_genomes_project X 31531642 31532138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009364.1 MGP_C3HHeJ_G0007499.1 mouse_genomes_project X 165555251 165570620 - Gm15232 lincRNA lincRNA MGP_C3HHeJ_T0096327.1 MGP_C3HHeJ_G0035560.1 mouse_genomes_project X 77711025 77758380 - MGP_C3HHeJ_P0096327 4930595M18Rik protein_coding protein_coding MGP_C3HHeJ_T0096099.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523812 70527011 + MGP_C3HHeJ_P0096099 Emd protein_coding protein_coding MGP_C3HHeJ_T0096100.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523877 70526485 + MGP_C3HHeJ_P0096100 Emd protein_coding protein_coding MGP_C3HHeJ_T0096101.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523886 70524811 + Emd protein_coding processed_transcript MGP_C3HHeJ_T0096102.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523935 70534968 + MGP_C3HHeJ_P0096102 Emd protein_coding protein_coding MGP_C3HHeJ_T0096103.1 MGP_C3HHeJ_G0035506.1 mouse_genomes_project X 70523941 70526447 + MGP_C3HHeJ_P0096103 Emd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097548.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160785620 160950299 - MGP_C3HHeJ_P0097548 Reps2 protein_coding protein_coding MGP_C3HHeJ_T0097549.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160785620 161031263 - MGP_C3HHeJ_P0097549 Reps2 protein_coding protein_coding MGP_C3HHeJ_T0097550.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160785620 161031311 - MGP_C3HHeJ_P0097550 Reps2 protein_coding protein_coding MGP_C3HHeJ_T0097551.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160908586 160950397 - Reps2 protein_coding processed_transcript MGP_C3HHeJ_T0097552.1 MGP_C3HHeJ_G0035908.1 mouse_genomes_project X 160928958 160936587 - Reps2 protein_coding retained_intron MGP_C3HHeJ_T0095755.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53250888 53260343 - MGP_C3HHeJ_P0095755 Rbmx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095756.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53253720 53260324 - MGP_C3HHeJ_P0095756 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0095757.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53253724 53260398 - MGP_C3HHeJ_P0095757 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0095758.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53254278 53260382 - MGP_C3HHeJ_P0095758 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0095759.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53255382 53260321 - MGP_C3HHeJ_P0095759 Rbmx protein_coding unknown_likely_coding MGP_C3HHeJ_T0095760.1 MGP_C3HHeJ_G0035420.1 mouse_genomes_project X 53257504 53260159 - MGP_C3HHeJ_P0095760 Rbmx protein_coding protein_coding MGP_C3HHeJ_T0102372.1 MGP_C3HHeJ_G0040335.1 mouse_genomes_project X 150078944 150079972 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099775.1 MGP_C3HHeJ_G0037969.1 mouse_genomes_project X 78484987 78485087 + Gm22686 snRNA snRNA MGP_C3HHeJ_T0096689.1 MGP_C3HHeJ_G0035659.1 mouse_genomes_project X 100425084 100434278 + MGP_C3HHeJ_P0096689 Cdx4 protein_coding protein_coding MGP_C3HHeJ_T0097371.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150114729 150198770 + MGP_C3HHeJ_P0097371 Iqsec2 protein_coding protein_coding MGP_C3HHeJ_T0097372.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150114733 150198771 + MGP_C3HHeJ_P0097372 Iqsec2 protein_coding protein_coding MGP_C3HHeJ_T0097373.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150114934 150166958 + MGP_C3HHeJ_P0097373 Iqsec2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097374.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150151124 150176317 + Iqsec2 protein_coding processed_transcript MGP_C3HHeJ_T0097375.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150151124 150166947 + Iqsec2 protein_coding processed_transcript MGP_C3HHeJ_T0097376.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150151124 150166947 + Iqsec2 protein_coding processed_transcript MGP_C3HHeJ_T0097377.1 MGP_C3HHeJ_G0035858.1 mouse_genomes_project X 150175323 150197422 + MGP_C3HHeJ_P0097377 Iqsec2 protein_coding protein_coding MGP_C3HHeJ_T0016397.1 MGP_C3HHeJ_G0014501.1 mouse_genomes_project X 103922428 103923782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016016.1 MGP_C3HHeJ_G0014120.1 mouse_genomes_project X 11388693 11388945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095097.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2513521 2514166 + Otud5 protein_coding processed_transcript MGP_C3HHeJ_T0095098.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2513988 2550062 + MGP_C3HHeJ_P0095098 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095099.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514013 2548296 + MGP_C3HHeJ_P0095099 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095100.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514213 2548721 + MGP_C3HHeJ_P0095100 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095101.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514239 2548726 + MGP_C3HHeJ_P0095101 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095102.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514273 2550056 + MGP_C3HHeJ_P0095102 Otud5 protein_coding protein_coding MGP_C3HHeJ_T0095103.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514762 2548720 + Otud5 protein_coding retained_intron MGP_C3HHeJ_T0095104.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2514763 2541401 + Otud5 protein_coding retained_intron MGP_C3HHeJ_T0095105.1 MGP_C3HHeJ_G0035208.1 mouse_genomes_project X 2527494 2541001 + Otud5 protein_coding retained_intron MGP_C3HHeJ_T0096458.1 MGP_C3HHeJ_G0035601.1 mouse_genomes_project X 93116542 93152296 - MGP_C3HHeJ_P0096458 Vsig4 protein_coding protein_coding MGP_C3HHeJ_T0096459.1 MGP_C3HHeJ_G0035601.1 mouse_genomes_project X 93119289 93152270 - Vsig4 protein_coding processed_transcript MGP_C3HHeJ_T0096870.1 MGP_C3HHeJ_G0035722.1 mouse_genomes_project X 116803045 116804210 - MGP_C3HHeJ_P0096870 protein_coding protein_coding MGP_C3HHeJ_T0096567.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 97991012 98128014 - MGP_C3HHeJ_P0096567 Snx12 protein_coding protein_coding MGP_C3HHeJ_T0096568.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 98117452 98128024 - MGP_C3HHeJ_P0096568 Snx12 protein_coding protein_coding MGP_C3HHeJ_T0096569.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 98117452 98128010 - MGP_C3HHeJ_P0096569 Snx12 protein_coding protein_coding MGP_C3HHeJ_T0096570.1 MGP_C3HHeJ_G0035629.1 mouse_genomes_project X 98118964 98120017 - Snx12 protein_coding processed_transcript MGP_C3HHeJ_T0096943.1 MGP_C3HHeJ_G0035745.1 mouse_genomes_project X 131716592 131732971 - MGP_C3HHeJ_P0096943 Taf7l protein_coding protein_coding MGP_C3HHeJ_T0096944.1 MGP_C3HHeJ_G0035745.1 mouse_genomes_project X 131717032 131731475 - MGP_C3HHeJ_P0096944 Taf7l protein_coding protein_coding MGP_C3HHeJ_T0096945.1 MGP_C3HHeJ_G0035745.1 mouse_genomes_project X 131726357 131731470 - Taf7l protein_coding processed_transcript MGP_C3HHeJ_T0099780.1 MGP_C3HHeJ_G0037974.1 mouse_genomes_project X 97899903 97899967 + Gm27510 snRNA snRNA MGP_C3HHeJ_T0098216.1 MGP_C3HHeJ_G0036428.1 mouse_genomes_project X 723073 723347 + n-R5s2 rRNA rRNA MGP_C3HHeJ_T0099762.1 MGP_C3HHeJ_G0037956.1 mouse_genomes_project X 52563133 52563298 + Gm26312 snRNA snRNA MGP_C3HHeJ_T0097405.1 MGP_C3HHeJ_G0035868.1 mouse_genomes_project X 151194440 151227395 + MGP_C3HHeJ_P0097405 Rragb protein_coding protein_coding MGP_C3HHeJ_T0097406.1 MGP_C3HHeJ_G0035868.1 mouse_genomes_project X 151194446 151208496 + MGP_C3HHeJ_P0097406 Rragb protein_coding protein_coding MGP_C3HHeJ_T0016042.1 MGP_C3HHeJ_G0014146.1 mouse_genomes_project X 17359670 17361639 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096509.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97196336 + Eda protein_coding retained_intron MGP_C3HHeJ_T0096510.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288135 + MGP_C3HHeJ_P0096510 Eda protein_coding protein_coding MGP_C3HHeJ_T0096511.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288132 + MGP_C3HHeJ_P0096511 Eda protein_coding protein_coding MGP_C3HHeJ_T0096512.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288135 + MGP_C3HHeJ_P0096512 Eda protein_coding protein_coding MGP_C3HHeJ_T0096513.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288132 + MGP_C3HHeJ_P0096513 Eda protein_coding protein_coding MGP_C3HHeJ_T0096514.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288133 + MGP_C3HHeJ_P0096514 Eda protein_coding protein_coding MGP_C3HHeJ_T0096515.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288133 + MGP_C3HHeJ_P0096515 Eda protein_coding protein_coding MGP_C3HHeJ_T0096516.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866691 97288133 + MGP_C3HHeJ_P0096516 Eda protein_coding protein_coding MGP_C3HHeJ_T0096517.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866866 97283185 + MGP_C3HHeJ_P0096517 Eda protein_coding protein_coding MGP_C3HHeJ_T0096518.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 96866866 97284529 + MGP_C3HHeJ_P0096518 Eda protein_coding protein_coding MGP_C3HHeJ_T0096519.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 97271415 97281811 + Eda protein_coding processed_transcript MGP_C3HHeJ_T0096520.1 MGP_C3HHeJ_G0035615.1 mouse_genomes_project X 97274629 97282409 + Eda protein_coding processed_transcript MGP_C3HHeJ_T0016174.1 MGP_C3HHeJ_G0014278.1 mouse_genomes_project X 62825040 62826233 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096528.1 MGP_C3HHeJ_G0035621.1 mouse_genomes_project X 97481665 97486373 - MGP_C3HHeJ_P0096528 P2ry4 protein_coding protein_coding MGP_C3HHeJ_T0098305.1 MGP_C3HHeJ_G0036517.1 mouse_genomes_project X 93010307 93010443 - Gm24718 scaRNA scaRNA MGP_C3HHeJ_T0005494.1 MGP_C3HHeJ_G0004625.1 mouse_genomes_project X 2297902 2303033 - Gm14703 antisense antisense MGP_C3HHeJ_T0016099.1 MGP_C3HHeJ_G0014203.1 mouse_genomes_project X 44347073 44347370 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016406.1 MGP_C3HHeJ_G0014510.1 mouse_genomes_project X 105356533 105361360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016410.1 MGP_C3HHeJ_G0014514.1 mouse_genomes_project X 106417409 106418293 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016511.1 MGP_C3HHeJ_G0014615.1 mouse_genomes_project X 133066851 133068672 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102347.1 MGP_C3HHeJ_G0040310.1 mouse_genomes_project X 71040987 71042098 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096581.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180606 98204042 + MGP_C3HHeJ_P0096581 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096582.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180805 98204042 + MGP_C3HHeJ_P0096582 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096583.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180836 98204042 + MGP_C3HHeJ_P0096583 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096584.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98180836 98204042 + MGP_C3HHeJ_P0096584 Med12 protein_coding protein_coding MGP_C3HHeJ_T0096585.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98189272 98190734 + Med12 protein_coding retained_intron MGP_C3HHeJ_T0096586.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98189762 98190505 + Med12 protein_coding processed_transcript MGP_C3HHeJ_T0096587.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98192600 98204042 + Med12 protein_coding retained_intron MGP_C3HHeJ_T0096588.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98199710 98202644 + Med12 protein_coding processed_transcript MGP_C3HHeJ_T0096589.1 MGP_C3HHeJ_G0035634.1 mouse_genomes_project X 98203145 98203964 + Med12 protein_coding processed_transcript MGP_C3HHeJ_T0018402.1 MGP_C3HHeJ_G0015538.1 mouse_genomes_project X 49246146 49247485 - processed_transcript TEC MGP_C3HHeJ_T0018403.1 MGP_C3HHeJ_G0015538.1 mouse_genomes_project X 49247159 49263514 - processed_transcript lincRNA MGP_C3HHeJ_T0101038.1 MGP_C3HHeJ_G0039232.1 mouse_genomes_project X 91228361 91228471 - Gm24595 snoRNA snoRNA MGP_C3HHeJ_T0016244.1 MGP_C3HHeJ_G0014348.1 mouse_genomes_project X 76517296 76517455 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095914.1 MGP_C3HHeJ_G0035478.1 mouse_genomes_project X 69570250 69586675 + MGP_C3HHeJ_P0095914 Zfp275 protein_coding protein_coding MGP_C3HHeJ_T0095915.1 MGP_C3HHeJ_G0035478.1 mouse_genomes_project X 69572054 69579433 + Zfp275 protein_coding retained_intron MGP_C3HHeJ_T0096707.1 MGP_C3HHeJ_G0035670.1 mouse_genomes_project X 102046966 102049282 - MGP_C3HHeJ_P0096707 Magee2 protein_coding protein_coding MGP_C3HHeJ_T0016509.1 MGP_C3HHeJ_G0014613.1 mouse_genomes_project X 132524341 132525087 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095902.1 MGP_C3HHeJ_G0035470.1 mouse_genomes_project X 69116999 69144256 + MGP_C3HHeJ_P0095902 Nsdhl protein_coding protein_coding MGP_C3HHeJ_T0095903.1 MGP_C3HHeJ_G0035470.1 mouse_genomes_project X 69128742 69139394 + Nsdhl protein_coding retained_intron MGP_C3HHeJ_T0096693.1 MGP_C3HHeJ_G0035663.1 mouse_genomes_project X 100753902 100754987 + MGP_C3HHeJ_P0096693 Zcchc13 protein_coding protein_coding MGP_C3HHeJ_T0015970.1 MGP_C3HHeJ_G0014074.1 mouse_genomes_project X 2415745 2416041 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016314.1 MGP_C3HHeJ_G0014418.1 mouse_genomes_project X 91383124 91383602 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099778.1 MGP_C3HHeJ_G0037972.1 mouse_genomes_project X 95659061 95659168 + Gm26000 snRNA snRNA MGP_C3HHeJ_T0016464.1 MGP_C3HHeJ_G0014568.1 mouse_genomes_project X 117490087 117490340 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095746.1 MGP_C3HHeJ_G0035418.1 mouse_genomes_project X 53066065 53078672 + MGP_C3HHeJ_P0095746 Cd40lg protein_coding protein_coding MGP_C3HHeJ_T0099750.1 MGP_C3HHeJ_G0037944.1 mouse_genomes_project X 15915370 15915475 - Gm26065 snRNA snRNA MGP_C3HHeJ_T0095684.1 MGP_C3HHeJ_G0035393.1 mouse_genomes_project X 48565105 48740472 - MGP_C3HHeJ_P0095684 Plac1 protein_coding protein_coding MGP_C3HHeJ_T0095685.1 MGP_C3HHeJ_G0035393.1 mouse_genomes_project X 48565106 48611325 - MGP_C3HHeJ_P0095685 Plac1 protein_coding protein_coding MGP_C3HHeJ_T0095686.1 MGP_C3HHeJ_G0035393.1 mouse_genomes_project X 48565282 48707235 - MGP_C3HHeJ_P0095686 Plac1 protein_coding protein_coding MGP_C3HHeJ_T0097637.1 MGP_C3HHeJ_G0035932.1 mouse_genomes_project X 163573383 163784036 - MGP_C3HHeJ_P0097637 Glra2 protein_coding protein_coding MGP_C3HHeJ_T0095462.1 MGP_C3HHeJ_G0035322.1 mouse_genomes_project X 32448784 32456417 - MGP_C3HHeJ_P0095462 Ndufa1 protein_coding protein_coding MGP_C3HHeJ_T0015974.1 MGP_C3HHeJ_G0014078.1 mouse_genomes_project X 2722868 2723736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095714.1 MGP_C3HHeJ_G0035409.1 mouse_genomes_project X 52372152 52378030 - MGP_C3HHeJ_P0095714 Gm648 protein_coding protein_coding MGP_C3HHeJ_T0097605.1 MGP_C3HHeJ_G0035923.1 mouse_genomes_project X 162620742 162686775 - MGP_C3HHeJ_P0097605 Bmx protein_coding protein_coding MGP_C3HHeJ_T0097606.1 MGP_C3HHeJ_G0035923.1 mouse_genomes_project X 162621255 162678963 - MGP_C3HHeJ_P0097606 Bmx protein_coding protein_coding MGP_C3HHeJ_T0095791.1 MGP_C3HHeJ_G0035432.1 mouse_genomes_project X 57671907 57673366 + MGP_C3HHeJ_P0095791 Ldoc1 protein_coding protein_coding MGP_C3HHeJ_T0095177.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904424 2917397 - MGP_C3HHeJ_P0095177 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095178.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904425 2917363 - MGP_C3HHeJ_P0095178 Porcn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095179.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904426 2917373 - MGP_C3HHeJ_P0095179 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095180.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904426 2917373 - MGP_C3HHeJ_P0095180 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095181.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904426 2917373 - MGP_C3HHeJ_P0095181 Porcn protein_coding protein_coding MGP_C3HHeJ_T0095182.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2904429 2917369 - MGP_C3HHeJ_P0095182 Porcn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095183.1 MGP_C3HHeJ_G0035226.1 mouse_genomes_project X 2914310 2917385 - Porcn protein_coding retained_intron MGP_C3HHeJ_T0096625.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457129 98526471 + MGP_C3HHeJ_P0096625 Taf1 protein_coding protein_coding MGP_C3HHeJ_T0096626.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457136 98527525 + MGP_C3HHeJ_P0096626 Taf1 protein_coding protein_coding MGP_C3HHeJ_T0096627.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457154 98526471 + MGP_C3HHeJ_P0096627 Taf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096628.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98457154 98474132 + MGP_C3HHeJ_P0096628 Taf1 protein_coding protein_coding MGP_C3HHeJ_T0096629.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98481242 98526471 + Taf1 protein_coding retained_intron MGP_C3HHeJ_T0096630.1 MGP_C3HHeJ_G0035640.1 mouse_genomes_project X 98515983 98526008 + Taf1 protein_coding processed_transcript MGP_C3HHeJ_T0016297.1 MGP_C3HHeJ_G0014401.1 mouse_genomes_project X 88704430 88705092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097016.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165839 133175995 + MGP_C3HHeJ_P0097016 Gprasp2 protein_coding protein_coding MGP_C3HHeJ_T0097017.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165861 133175991 + MGP_C3HHeJ_P0097017 Gprasp2 protein_coding protein_coding MGP_C3HHeJ_T0097018.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165896 133171458 + Gprasp2 protein_coding processed_transcript MGP_C3HHeJ_T0097019.1 MGP_C3HHeJ_G0035769.1 mouse_genomes_project X 133165909 133171335 + Gprasp2 protein_coding processed_transcript MGP_C3HHeJ_T0011124.1 MGP_C3HHeJ_G0009257.1 mouse_genomes_project X 144712386 144712491 + Gm22650 miRNA miRNA MGP_C3HHeJ_T0097188.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140916884 141024037 - MGP_C3HHeJ_P0097188 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097189.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140916894 141028200 - MGP_C3HHeJ_P0097189 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097190.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140928376 141027818 - MGP_C3HHeJ_P0097190 Chrdl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097191.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140928384 141028122 - MGP_C3HHeJ_P0097191 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097192.1 MGP_C3HHeJ_G0035830.1 mouse_genomes_project X 140928386 141027834 - MGP_C3HHeJ_P0097192 Chrdl1 protein_coding protein_coding MGP_C3HHeJ_T0097232.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143129273 143189615 - MGP_C3HHeJ_P0097232 Amot protein_coding protein_coding MGP_C3HHeJ_T0097233.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143134672 143171718 - MGP_C3HHeJ_P0097233 Amot protein_coding protein_coding MGP_C3HHeJ_T0097234.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143142552 143144717 - Amot protein_coding retained_intron MGP_C3HHeJ_T0097235.1 MGP_C3HHeJ_G0035838.1 mouse_genomes_project X 143158497 143189875 - MGP_C3HHeJ_P0097235 Amot protein_coding protein_coding MGP_C3HHeJ_T0016043.1 MGP_C3HHeJ_G0014147.1 mouse_genomes_project X 17440288 17440763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016568.1 MGP_C3HHeJ_G0014672.1 mouse_genomes_project X 140238137 140238548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016478.1 MGP_C3HHeJ_G0014582.1 mouse_genomes_project X 124042034 124044071 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016148.1 MGP_C3HHeJ_G0014252.1 mouse_genomes_project X 56755550 56756125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095121.1 MGP_C3HHeJ_G0035212.1 mouse_genomes_project X 2572848 2583380 + MGP_C3HHeJ_P0095121 Timm17b protein_coding protein_coding MGP_C3HHeJ_T0095122.1 MGP_C3HHeJ_G0035212.1 mouse_genomes_project X 2573162 2580621 + MGP_C3HHeJ_P0095122 Timm17b protein_coding protein_coding MGP_C3HHeJ_T0095123.1 MGP_C3HHeJ_G0035212.1 mouse_genomes_project X 2580404 2581999 + Timm17b protein_coding retained_intron MGP_C3HHeJ_T0095763.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53908026 53917872 + MGP_C3HHeJ_P0095763 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0095764.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53917066 53922983 + MGP_C3HHeJ_P0095764 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0095765.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53917422 53922983 + MGP_C3HHeJ_P0095765 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0095766.1 MGP_C3HHeJ_G0035423.1 mouse_genomes_project X 53917433 53928158 + MGP_C3HHeJ_P0095766 Zic3 protein_coding protein_coding MGP_C3HHeJ_T0016275.1 MGP_C3HHeJ_G0014379.1 mouse_genomes_project X 85204584 85204776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015980.1 MGP_C3HHeJ_G0014084.1 mouse_genomes_project X 3752705 3754202 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018398.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48549458 48551603 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018399.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48549619 48551573 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018400.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48550182 48551601 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018401.1 MGP_C3HHeJ_G0015537.1 mouse_genomes_project X 48550605 48551603 - C430049B03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016395.1 MGP_C3HHeJ_G0014499.1 mouse_genomes_project X 103892693 103892986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016487.1 MGP_C3HHeJ_G0014591.1 mouse_genomes_project X 127658964 127659640 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096708.1 MGP_C3HHeJ_G0035671.1 mouse_genomes_project X 102285003 102290434 + MGP_C3HHeJ_P0096708 Pbdc1 protein_coding protein_coding MGP_C3HHeJ_T0096709.1 MGP_C3HHeJ_G0035671.1 mouse_genomes_project X 102285008 102323503 + MGP_C3HHeJ_P0096709 Pbdc1 protein_coding protein_coding MGP_C3HHeJ_T0096710.1 MGP_C3HHeJ_G0035671.1 mouse_genomes_project X 102285022 102288408 + Pbdc1 protein_coding retained_intron MGP_C3HHeJ_T0016261.1 MGP_C3HHeJ_G0014365.1 mouse_genomes_project X 82173876 82174313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016295.1 MGP_C3HHeJ_G0014399.1 mouse_genomes_project X 88621349 88622384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096752.1 MGP_C3HHeJ_G0035679.1 mouse_genomes_project X 103364000 103364419 + Tlr13 protein_coding retained_intron MGP_C3HHeJ_T0096753.1 MGP_C3HHeJ_G0035679.1 mouse_genomes_project X 103364025 103382233 + MGP_C3HHeJ_P0096753 Tlr13 protein_coding protein_coding MGP_C3HHeJ_T0016057.1 MGP_C3HHeJ_G0014161.1 mouse_genomes_project X 34100854 34101148 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096268.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71753879 71759977 - MGP_C3HHeJ_P0096268 Mtcp1 protein_coding protein_coding MGP_C3HHeJ_T0096269.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71754085 71759852 - Mtcp1 protein_coding processed_transcript MGP_C3HHeJ_T0096270.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71754212 71760022 - MGP_C3HHeJ_P0096270 Mtcp1 protein_coding protein_coding MGP_C3HHeJ_T0096271.1 MGP_C3HHeJ_G0035538.1 mouse_genomes_project X 71756607 71760002 - Mtcp1 protein_coding retained_intron MGP_C3HHeJ_T0002441.1 MGP_C3HHeJ_G0002359.1 mouse_genomes_project X 69633405 69634661 + TEC TEC MGP_C3HHeJ_T0101059.1 MGP_C3HHeJ_G0039253.1 mouse_genomes_project X 144707386 144707514 + Snora35 snoRNA snoRNA MGP_C3HHeJ_T0097028.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133521613 133524869 - MGP_C3HHeJ_P0097028 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0097029.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133522710 133524960 - MGP_C3HHeJ_P0097029 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0097030.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133523514 133524834 - MGP_C3HHeJ_P0097030 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0097031.1 MGP_C3HHeJ_G0035774.1 mouse_genomes_project X 133523618 133524819 - MGP_C3HHeJ_P0097031 Tceal8 protein_coding protein_coding MGP_C3HHeJ_T0096229.1 MGP_C3HHeJ_G0035530.1 mouse_genomes_project X 71267708 71268819 + MGP_C3HHeJ_P0096229 protein_coding protein_coding MGP_C3HHeJ_T0009312.1 MGP_C3HHeJ_G0007469.1 mouse_genomes_project X 92597523 92598312 - 1700010D01Rik lincRNA lincRNA MGP_C3HHeJ_T0095285.1 MGP_C3HHeJ_G0035262.1 mouse_genomes_project X 8625106 8631187 + MGP_C3HHeJ_P0095285 Gpr82 protein_coding protein_coding MGP_C3HHeJ_T0016658.1 MGP_C3HHeJ_G0014762.1 mouse_genomes_project X 158627083 158627565 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016347.1 MGP_C3HHeJ_G0014451.1 mouse_genomes_project X 98400850 98401062 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097667.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165712144 165730820 - MGP_C3HHeJ_P0097667 Tlr8 protein_coding protein_coding MGP_C3HHeJ_T0097668.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165712180 165730322 - MGP_C3HHeJ_P0097668 Tlr8 protein_coding protein_coding MGP_C3HHeJ_T0097669.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165714267 165730833 - Tlr8 protein_coding processed_transcript MGP_C3HHeJ_T0097670.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165714991 165730863 - MGP_C3HHeJ_P0097670 Tlr8 protein_coding protein_coding MGP_C3HHeJ_T0097671.1 MGP_C3HHeJ_G0035941.1 mouse_genomes_project X 165725886 165730818 - Tlr8 protein_coding processed_transcript MGP_C3HHeJ_T0016060.1 MGP_C3HHeJ_G0014164.1 mouse_genomes_project X 34465774 34466030 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096367.1 MGP_C3HHeJ_G0035572.1 mouse_genomes_project X 86237358 86240582 + MGP_C3HHeJ_P0096367 4932429P05Rik protein_coding protein_coding MGP_C3HHeJ_T0097657.1 MGP_C3HHeJ_G0035937.1 mouse_genomes_project X 164902271 164923863 - MGP_C3HHeJ_P0097657 Rab9 protein_coding protein_coding MGP_C3HHeJ_T0097658.1 MGP_C3HHeJ_G0035937.1 mouse_genomes_project X 164902768 164923642 - MGP_C3HHeJ_P0097658 Rab9 protein_coding protein_coding MGP_C3HHeJ_T0097659.1 MGP_C3HHeJ_G0035937.1 mouse_genomes_project X 164903171 164919431 - MGP_C3HHeJ_P0097659 Rab9 protein_coding protein_coding MGP_C3HHeJ_T0005522.1 MGP_C3HHeJ_G0004646.1 mouse_genomes_project X 82123313 82129780 + Gm14764 antisense antisense MGP_C3HHeJ_T0016111.1 MGP_C3HHeJ_G0014215.1 mouse_genomes_project X 46673345 46674034 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095470.1 MGP_C3HHeJ_G0035329.1 mouse_genomes_project X 33162607 33165152 - MGP_C3HHeJ_P0095470 protein_coding protein_coding MGP_C3HHeJ_T0099758.1 MGP_C3HHeJ_G0037952.1 mouse_genomes_project X 41208191 41208298 - Gm25078 snRNA snRNA MGP_C3HHeJ_T0096712.1 MGP_C3HHeJ_G0035673.1 mouse_genomes_project X 102725083 102725951 + MGP_C3HHeJ_P0096712 Cypt2 protein_coding protein_coding MGP_C3HHeJ_T0098220.1 MGP_C3HHeJ_G0036432.1 mouse_genomes_project X 16856888 16856967 + Gm25553 rRNA rRNA MGP_C3HHeJ_T0102368.1 MGP_C3HHeJ_G0040331.1 mouse_genomes_project X 133050085 133052326 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095872.1 MGP_C3HHeJ_G0035458.1 mouse_genomes_project X 67841150 67846714 + MGP_C3HHeJ_P0095872 Gpr50 protein_coding protein_coding MGP_C3HHeJ_T0095873.1 MGP_C3HHeJ_G0035458.1 mouse_genomes_project X 67841449 67844849 + Gpr50 protein_coding processed_transcript MGP_C3HHeJ_T0095874.1 MGP_C3HHeJ_G0035458.1 mouse_genomes_project X 67841449 67844849 + Gpr50 protein_coding processed_transcript MGP_C3HHeJ_T0096669.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096669 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096670.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096670 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096671.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096671 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096672.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096672 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096673.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096673 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096674.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99483626 99615213 - MGP_C3HHeJ_P0096674 Phka1 protein_coding protein_coding MGP_C3HHeJ_T0096675.1 MGP_C3HHeJ_G0035652.1 mouse_genomes_project X 99524321 99615213 - Phka1 protein_coding retained_intron MGP_C3HHeJ_T0101062.1 MGP_C3HHeJ_G0039256.1 mouse_genomes_project X 149483362 149483468 - Gm24460 snoRNA snoRNA MGP_C3HHeJ_T0096475.1 MGP_C3HHeJ_G0035606.1 mouse_genomes_project X 93943533 93953006 + MGP_C3HHeJ_P0096475 Pgr15l protein_coding protein_coding MGP_C3HHeJ_T0097291.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718457 148726433 - MGP_C3HHeJ_P0097291 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097292.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718508 148725056 - Maged2 protein_coding retained_intron MGP_C3HHeJ_T0097293.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718508 148725795 - MGP_C3HHeJ_P0097293 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097294.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718511 148726357 - MGP_C3HHeJ_P0097294 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097295.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148718804 148724803 - MGP_C3HHeJ_P0097295 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097296.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148722961 148725166 - MGP_C3HHeJ_P0097296 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097297.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148722978 148725242 - MGP_C3HHeJ_P0097297 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097298.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148723187 148724549 - Maged2 protein_coding processed_transcript MGP_C3HHeJ_T0097299.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148723225 148726369 - MGP_C3HHeJ_P0097299 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0097300.1 MGP_C3HHeJ_G0035847.1 mouse_genomes_project X 148723962 148725046 - MGP_C3HHeJ_P0097300 Maged2 protein_coding protein_coding MGP_C3HHeJ_T0005513.1 MGP_C3HHeJ_G0004638.1 mouse_genomes_project X 56831805 56836204 + Gm14662 antisense antisense MGP_C3HHeJ_T0097599.1 MGP_C3HHeJ_G0035921.1 mouse_genomes_project X 162512563 162544793 + MGP_C3HHeJ_P0097599 Tmem27 protein_coding protein_coding MGP_C3HHeJ_T0097600.1 MGP_C3HHeJ_G0035921.1 mouse_genomes_project X 162513914 162544792 + MGP_C3HHeJ_P0097600 Tmem27 protein_coding protein_coding MGP_C3HHeJ_T0097601.1 MGP_C3HHeJ_G0035921.1 mouse_genomes_project X 162515912 162544147 + MGP_C3HHeJ_P0097601 Tmem27 protein_coding protein_coding MGP_C3HHeJ_T0016653.1 MGP_C3HHeJ_G0014757.1 mouse_genomes_project X 157887326 157887602 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097074.1 MGP_C3HHeJ_G0035791.1 mouse_genomes_project X 134626443 134631430 - MGP_C3HHeJ_P0097074 Esx1 protein_coding protein_coding MGP_C3HHeJ_T0097075.1 MGP_C3HHeJ_G0035791.1 mouse_genomes_project X 134626443 134631275 - MGP_C3HHeJ_P0097075 Esx1 protein_coding protein_coding MGP_C3HHeJ_T0097076.1 MGP_C3HHeJ_G0035791.1 mouse_genomes_project X 134629160 134633317 - MGP_C3HHeJ_P0097076 Esx1 protein_coding protein_coding MGP_C3HHeJ_T0095830.1 MGP_C3HHeJ_G0035449.1 mouse_genomes_project X 66399782 66425845 - MGP_C3HHeJ_P0095830 Ids protein_coding protein_coding MGP_C3HHeJ_T0095831.1 MGP_C3HHeJ_G0035449.1 mouse_genomes_project X 66411830 66421851 - MGP_C3HHeJ_P0095831 Ids protein_coding protein_coding MGP_C3HHeJ_T0097178.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999071 - MGP_C3HHeJ_P0097178 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097179.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999262 - MGP_C3HHeJ_P0097179 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097180.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999231 - MGP_C3HHeJ_P0097180 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097181.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139918539 139999231 - MGP_C3HHeJ_P0097181 Acsl4 protein_coding protein_coding MGP_C3HHeJ_T0097182.1 MGP_C3HHeJ_G0035826.1 mouse_genomes_project X 139921216 139935240 - Acsl4 protein_coding processed_transcript MGP_C3HHeJ_T0015999.1 MGP_C3HHeJ_G0014103.1 mouse_genomes_project X 7578316 7578676 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095007.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2202224 2219147 - MGP_C3HHeJ_P0095007 Ppp1r3f protein_coding protein_coding MGP_C3HHeJ_T0095008.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2203880 2219112 - MGP_C3HHeJ_P0095008 Ppp1r3f protein_coding protein_coding MGP_C3HHeJ_T0095009.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2204150 2209116 - Ppp1r3f protein_coding processed_transcript MGP_C3HHeJ_T0095010.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2205170 2217707 - MGP_C3HHeJ_P0095010 Ppp1r3f protein_coding protein_coding MGP_C3HHeJ_T0095011.1 MGP_C3HHeJ_G0035193.1 mouse_genomes_project X 2207158 2209147 - Ppp1r3f protein_coding processed_transcript MGP_C3HHeJ_T0009274.1 MGP_C3HHeJ_G0007442.1 mouse_genomes_project X 5596289 5607559 - Gm10489 lincRNA lincRNA MGP_C3HHeJ_T0011690.1 MGP_C3HHeJ_G0009823.1 mouse_genomes_project X 161079989 161080304 + Gm25557 misc_RNA misc_RNA MGP_C3HHeJ_T0016483.1 MGP_C3HHeJ_G0014587.1 mouse_genomes_project X 126644718 126645720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011092.1 MGP_C3HHeJ_G0009225.1 mouse_genomes_project X 70283818 70283906 - Mir718 miRNA miRNA MGP_C3HHeJ_T0096664.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99250245 99474876 - MGP_C3HHeJ_P0096664 Hdac8 protein_coding protein_coding MGP_C3HHeJ_T0096665.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99375261 99474598 - MGP_C3HHeJ_P0096665 Hdac8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096666.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99377216 99474663 - Hdac8 protein_coding processed_transcript MGP_C3HHeJ_T0096667.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99383928 99474862 - Hdac8 protein_coding processed_transcript MGP_C3HHeJ_T0096668.1 MGP_C3HHeJ_G0035651.1 mouse_genomes_project X 99467676 99474258 - Hdac8 protein_coding retained_intron MGP_C3HHeJ_T0016446.1 MGP_C3HHeJ_G0014550.1 mouse_genomes_project X 114066107 114066410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016061.1 MGP_C3HHeJ_G0014165.1 mouse_genomes_project X 34563697 34564018 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018461.1 MGP_C3HHeJ_G0015556.1 mouse_genomes_project X 167849299 167890049 + Gm15246 processed_transcript processed_transcript MGP_C3HHeJ_T0018462.1 MGP_C3HHeJ_G0015556.1 mouse_genomes_project X 167849299 167897376 + Gm15246 processed_transcript processed_transcript MGP_C3HHeJ_T0096300.1 MGP_C3HHeJ_G0035551.1 mouse_genomes_project X 74318442 74323816 + MGP_C3HHeJ_P0096300 5430402E10Rik protein_coding protein_coding MGP_C3HHeJ_T0101494.1 MGP_C3HHeJ_G0039486.1 mouse_genomes_project X 60204707 60206553 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0016318.1 MGP_C3HHeJ_G0014422.1 mouse_genomes_project X 91583915 91584615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016366.1 MGP_C3HHeJ_G0014470.1 mouse_genomes_project X 100616629 100617407 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016030.1 MGP_C3HHeJ_G0014134.1 mouse_genomes_project X 14959311 14959774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095505.1 MGP_C3HHeJ_G0035342.1 mouse_genomes_project X 34111684 34304927 + MGP_C3HHeJ_P0095505 6030498E09Rik protein_coding protein_coding MGP_C3HHeJ_T0095506.1 MGP_C3HHeJ_G0035342.1 mouse_genomes_project X 34296593 34298065 + MGP_C3HHeJ_P0095506 6030498E09Rik protein_coding protein_coding MGP_C3HHeJ_T0016093.1 MGP_C3HHeJ_G0014197.1 mouse_genomes_project X 42791763 42792665 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096623.1 MGP_C3HHeJ_G0035639.1 mouse_genomes_project X 98368695 98373149 + MGP_C3HHeJ_P0096623 Itgb1bp2 protein_coding protein_coding MGP_C3HHeJ_T0096624.1 MGP_C3HHeJ_G0035639.1 mouse_genomes_project X 98371718 98372752 + Itgb1bp2 protein_coding retained_intron MGP_C3HHeJ_T0016375.1 MGP_C3HHeJ_G0014479.1 mouse_genomes_project X 101028710 101029724 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102366.1 MGP_C3HHeJ_G0040329.1 mouse_genomes_project X 103581234 103705365 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096576.1 MGP_C3HHeJ_G0035632.1 mouse_genomes_project X 98167442 98175704 - MGP_C3HHeJ_P0096576 Gm20489 protein_coding protein_coding MGP_C3HHeJ_T0018369.1 MGP_C3HHeJ_G0015525.1 mouse_genomes_project X 2019465 2021583 + Gm14379 processed_transcript processed_transcript MGP_C3HHeJ_T0016144.1 MGP_C3HHeJ_G0014248.1 mouse_genomes_project X 56500986 56502918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097441.1 MGP_C3HHeJ_G0035883.1 mouse_genomes_project X 153808561 153859285 - MGP_C3HHeJ_P0097441 Ptchd1 protein_coding protein_coding MGP_C3HHeJ_T0097442.1 MGP_C3HHeJ_G0035883.1 mouse_genomes_project X 153808647 153859078 - MGP_C3HHeJ_P0097442 Ptchd1 protein_coding protein_coding MGP_C3HHeJ_T0097443.1 MGP_C3HHeJ_G0035883.1 mouse_genomes_project X 153822784 153859774 - Ptchd1 protein_coding processed_transcript MGP_C3HHeJ_T0016357.1 MGP_C3HHeJ_G0014461.1 mouse_genomes_project X 100138157 100138670 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016022.1 MGP_C3HHeJ_G0014126.1 mouse_genomes_project X 12927045 12927865 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101316.1 MGP_C3HHeJ_G0039405.1 mouse_genomes_project X 150414011 150416211 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101317.1 MGP_C3HHeJ_G0039405.1 mouse_genomes_project X 150414296 150415438 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016689.1 MGP_C3HHeJ_G0014793.1 mouse_genomes_project X 166277682 166278978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016319.1 MGP_C3HHeJ_G0014423.1 mouse_genomes_project X 91599422 91600052 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095124.1 MGP_C3HHeJ_G0035213.1 mouse_genomes_project X 2582721 2582864 - MGP_C3HHeJ_P0095124 protein_coding protein_coding MGP_C3HHeJ_T0094992.1 MGP_C3HHeJ_G0035187.1 mouse_genomes_project X 1046938 1280072 + MGP_C3HHeJ_P0094992 Shroom4 protein_coding protein_coding MGP_C3HHeJ_T0094993.1 MGP_C3HHeJ_G0035187.1 mouse_genomes_project X 1063350 1229494 + MGP_C3HHeJ_P0094993 Shroom4 protein_coding protein_coding MGP_C3HHeJ_T0101039.1 MGP_C3HHeJ_G0039233.1 mouse_genomes_project X 98047764 98047884 - Gm24061 snoRNA snoRNA MGP_C3HHeJ_T0102337.1 MGP_C3HHeJ_G0040300.1 mouse_genomes_project X 32963357 32965135 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016399.1 MGP_C3HHeJ_G0014503.1 mouse_genomes_project X 104027636 104028042 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016594.1 MGP_C3HHeJ_G0014698.1 mouse_genomes_project X 144367532 144368009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016573.1 MGP_C3HHeJ_G0014677.1 mouse_genomes_project X 141884044 141884354 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099811.1 MGP_C3HHeJ_G0038005.1 mouse_genomes_project X 160478377 160478481 + Gm23794 snRNA snRNA MGP_C3HHeJ_T0016385.1 MGP_C3HHeJ_G0014489.1 mouse_genomes_project X 102349602 102350629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095386.1 MGP_C3HHeJ_G0035292.1 mouse_genomes_project X 16191538 16195461 + MGP_C3HHeJ_P0095386 Spaca5 protein_coding protein_coding MGP_C3HHeJ_T0016604.1 MGP_C3HHeJ_G0014708.1 mouse_genomes_project X 149103011 149103371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095747.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53086941 53096330 - Arhgef6 protein_coding retained_intron MGP_C3HHeJ_T0095748.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53086941 53199525 - MGP_C3HHeJ_P0095748 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095749.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53088896 53141200 - MGP_C3HHeJ_P0095749 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095750.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53094670 53106743 - MGP_C3HHeJ_P0095750 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095751.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53104385 53187296 - MGP_C3HHeJ_P0095751 Arhgef6 protein_coding protein_coding MGP_C3HHeJ_T0095752.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53130905 53187298 - Arhgef6 protein_coding retained_intron MGP_C3HHeJ_T0095753.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53159216 53161558 - Arhgef6 protein_coding processed_transcript MGP_C3HHeJ_T0095754.1 MGP_C3HHeJ_G0035419.1 mouse_genomes_project X 53196699 53199302 - Arhgef6 protein_coding retained_intron MGP_C3HHeJ_T0095518.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37171892 37193252 - MGP_C3HHeJ_P0095518 protein_coding protein_coding MGP_C3HHeJ_T0095519.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37171892 37286158 - MGP_C3HHeJ_P0095519 protein_coding protein_coding MGP_C3HHeJ_T0095520.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37174010 37193626 - MGP_C3HHeJ_P0095520 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095521.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37174384 37184796 - MGP_C3HHeJ_P0095521 protein_coding protein_coding MGP_C3HHeJ_T0095522.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37180682 37185284 - MGP_C3HHeJ_P0095522 protein_coding protein_coding MGP_C3HHeJ_T0095523.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37180694 37184948 - MGP_C3HHeJ_P0095523 protein_coding protein_coding MGP_C3HHeJ_T0095524.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37181866 37192721 - protein_coding processed_transcript MGP_C3HHeJ_T0095525.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37191009 37193328 - protein_coding retained_intron MGP_C3HHeJ_T0095526.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37193203 37237935 - protein_coding processed_transcript MGP_C3HHeJ_T0095527.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37193599 37210207 - protein_coding retained_intron MGP_C3HHeJ_T0095528.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37202620 37210349 - protein_coding retained_intron MGP_C3HHeJ_T0095529.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37235567 37286158 - protein_coding retained_intron MGP_C3HHeJ_T0095530.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37239105 37286143 - MGP_C3HHeJ_P0095530 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095531.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37252859 37295042 - MGP_C3HHeJ_P0095531 protein_coding protein_coding MGP_C3HHeJ_T0095532.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37252863 37270574 - MGP_C3HHeJ_P0095532 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095533.1 MGP_C3HHeJ_G0035346.1 mouse_genomes_project X 37258407 37272029 - protein_coding retained_intron MGP_C3HHeJ_T0095047.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383057 2387377 + MGP_C3HHeJ_P0095047 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095048.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383304 2389285 + MGP_C3HHeJ_P0095048 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095049.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383324 2389075 + MGP_C3HHeJ_P0095049 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095050.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383333 2389286 + MGP_C3HHeJ_P0095050 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095051.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383334 2387377 + MGP_C3HHeJ_P0095051 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095052.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383334 2389267 + MGP_C3HHeJ_P0095052 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095053.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383344 2389035 + MGP_C3HHeJ_P0095053 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095054.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383439 2385376 + MGP_C3HHeJ_P0095054 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095055.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383441 2387361 + MGP_C3HHeJ_P0095055 Wdr45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095056.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383446 2387376 + MGP_C3HHeJ_P0095056 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095057.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2383817 2387417 + Wdr45 protein_coding processed_transcript MGP_C3HHeJ_T0095058.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2384011 2389088 + MGP_C3HHeJ_P0095058 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095059.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2384415 2387112 + MGP_C3HHeJ_P0095059 Wdr45 protein_coding protein_coding MGP_C3HHeJ_T0095060.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2384629 2386965 + Wdr45 protein_coding processed_transcript MGP_C3HHeJ_T0095061.1 MGP_C3HHeJ_G0035202.1 mouse_genomes_project X 2387657 2388575 + Wdr45 protein_coding processed_transcript MGP_C3HHeJ_T0016350.1 MGP_C3HHeJ_G0014454.1 mouse_genomes_project X 98746198 98747078 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099746.1 MGP_C3HHeJ_G0037940.1 mouse_genomes_project X 12332725 12332829 + Gm22294 snRNA snRNA MGP_C3HHeJ_T0097524.1 MGP_C3HHeJ_G0035901.1 mouse_genomes_project X 158952136 159051681 - MGP_C3HHeJ_P0097524 Ppef1 protein_coding protein_coding MGP_C3HHeJ_T0097525.1 MGP_C3HHeJ_G0035901.1 mouse_genomes_project X 158971867 159064423 - MGP_C3HHeJ_P0097525 Ppef1 protein_coding protein_coding MGP_C3HHeJ_T0097526.1 MGP_C3HHeJ_G0035901.1 mouse_genomes_project X 159025252 159051645 - MGP_C3HHeJ_P0097526 Ppef1 protein_coding protein_coding MGP_C3HHeJ_T0095468.1 MGP_C3HHeJ_G0035327.1 mouse_genomes_project X 33134977 33139398 - MGP_C3HHeJ_P0095468 Rhox8 protein_coding protein_coding MGP_C3HHeJ_T0016031.1 MGP_C3HHeJ_G0014135.1 mouse_genomes_project X 15417552 15417958 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011093.1 MGP_C3HHeJ_G0009226.1 mouse_genomes_project X 70546814 70546893 - Mir7091 miRNA miRNA MGP_C3HHeJ_T0011051.1 MGP_C3HHeJ_G0009184.1 mouse_genomes_project X 48219884 48219964 - Mir20b miRNA miRNA MGP_C3HHeJ_T0097680.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165955435 166641464 - MGP_C3HHeJ_P0097680 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097681.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165955435 167088106 - MGP_C3HHeJ_P0097681 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097682.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165955439 166404133 - MGP_C3HHeJ_P0097682 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097683.1 MGP_C3HHeJ_G0035944.1 mouse_genomes_project X 165959424 166230957 - MGP_C3HHeJ_P0097683 Frmpd4 protein_coding protein_coding MGP_C3HHeJ_T0097546.1 MGP_C3HHeJ_G0035907.1 mouse_genomes_project X 160189029 160523903 - MGP_C3HHeJ_P0097546 Nhs protein_coding protein_coding MGP_C3HHeJ_T0097547.1 MGP_C3HHeJ_G0035907.1 mouse_genomes_project X 160192548 160523561 - MGP_C3HHeJ_P0097547 Nhs protein_coding protein_coding MGP_C3HHeJ_T0016109.1 MGP_C3HHeJ_G0014213.1 mouse_genomes_project X 46653357 46654474 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096861.1 MGP_C3HHeJ_G0035715.1 mouse_genomes_project X 111623041 111704138 + MGP_C3HHeJ_P0096861 Klhl4 protein_coding protein_coding MGP_C3HHeJ_T0096862.1 MGP_C3HHeJ_G0035715.1 mouse_genomes_project X 111623041 111704138 + MGP_C3HHeJ_P0096862 Klhl4 protein_coding protein_coding MGP_C3HHeJ_T0096863.1 MGP_C3HHeJ_G0035715.1 mouse_genomes_project X 111623312 111703817 + MGP_C3HHeJ_P0096863 Klhl4 protein_coding protein_coding MGP_C3HHeJ_T0011666.1 MGP_C3HHeJ_G0009799.1 mouse_genomes_project X 84335882 84336166 - Gm24812 misc_RNA misc_RNA MGP_C3HHeJ_T0099807.1 MGP_C3HHeJ_G0038001.1 mouse_genomes_project X 151661061 151661168 - Gm25793 snRNA snRNA MGP_C3HHeJ_T0016280.1 MGP_C3HHeJ_G0014384.1 mouse_genomes_project X 85576017 85577497 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096541.1 MGP_C3HHeJ_G0035624.1 mouse_genomes_project X 97517105 97620649 + MGP_C3HHeJ_P0096541 Kif4 protein_coding protein_coding MGP_C3HHeJ_T0096542.1 MGP_C3HHeJ_G0035624.1 mouse_genomes_project X 97525241 97527591 + Kif4 protein_coding retained_intron MGP_C3HHeJ_T0096543.1 MGP_C3HHeJ_G0035624.1 mouse_genomes_project X 97604183 97618085 + Kif4 protein_coding processed_transcript MGP_C3HHeJ_T0015996.1 MGP_C3HHeJ_G0014100.1 mouse_genomes_project X 6894434 6894664 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096771.1 MGP_C3HHeJ_G0035686.1 mouse_genomes_project X 104199995 104213589 + MGP_C3HHeJ_P0096771 Lpar4 protein_coding protein_coding MGP_C3HHeJ_T0016268.1 MGP_C3HHeJ_G0014372.1 mouse_genomes_project X 84478763 84479299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011675.1 MGP_C3HHeJ_G0009808.1 mouse_genomes_project X 100746839 100747044 + Gm27321 misc_RNA misc_RNA MGP_C3HHeJ_T0099747.1 MGP_C3HHeJ_G0037941.1 mouse_genomes_project X 14414967 14415074 + Gm22783 snRNA snRNA MGP_C3HHeJ_T0097177.1 MGP_C3HHeJ_G0035825.1 mouse_genomes_project X 139905298 139906841 - MGP_C3HHeJ_P0097177 Kcne1l protein_coding protein_coding MGP_C3HHeJ_T0096460.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93165045 93308402 - MGP_C3HHeJ_P0096460 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096461.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93165734 93209506 - MGP_C3HHeJ_P0096461 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096462.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93166232 93308391 - MGP_C3HHeJ_P0096462 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096463.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93166390 93227403 - MGP_C3HHeJ_P0096463 Hsf3 protein_coding protein_coding MGP_C3HHeJ_T0096464.1 MGP_C3HHeJ_G0035602.1 mouse_genomes_project X 93178281 93196322 - Hsf3 protein_coding retained_intron MGP_C3HHeJ_T0016274.1 MGP_C3HHeJ_G0014378.1 mouse_genomes_project X 85188154 85190599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097467.1 MGP_C3HHeJ_G0035890.1 mouse_genomes_project X 156068747 156070682 + MGP_C3HHeJ_P0097467 Klhl34 protein_coding protein_coding MGP_C3HHeJ_T0096331.1 MGP_C3HHeJ_G0035562.1 mouse_genomes_project X 79816937 79818355 - MGP_C3HHeJ_P0096331 Tsga8 protein_coding protein_coding MGP_C3HHeJ_T0011077.1 MGP_C3HHeJ_G0009210.1 mouse_genomes_project X 62873446 62873523 - Mir871 miRNA miRNA MGP_C3HHeJ_T0016522.1 MGP_C3HHeJ_G0014626.1 mouse_genomes_project X 134183583 134183921 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095979.1 MGP_C3HHeJ_G0035493.1 mouse_genomes_project X 70042578 70077245 - MGP_C3HHeJ_P0095979 Pdzd4 protein_coding protein_coding MGP_C3HHeJ_T0095980.1 MGP_C3HHeJ_G0035493.1 mouse_genomes_project X 70042578 70077245 - MGP_C3HHeJ_P0095980 Pdzd4 protein_coding protein_coding MGP_C3HHeJ_T0016041.1 MGP_C3HHeJ_G0014145.1 mouse_genomes_project X 17335454 17335808 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016112.1 MGP_C3HHeJ_G0014216.1 mouse_genomes_project X 47076661 47076859 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095214.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4508221 4516941 - MGP_C3HHeJ_P0095214 Dynlt3 protein_coding protein_coding MGP_C3HHeJ_T0095215.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4509928 4513555 - Dynlt3 protein_coding processed_transcript MGP_C3HHeJ_T0095216.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4510210 4516941 - Dynlt3 protein_coding processed_transcript MGP_C3HHeJ_T0095217.1 MGP_C3HHeJ_G0035244.1 mouse_genomes_project X 4510272 4511292 - Dynlt3 protein_coding processed_transcript MGP_C3HHeJ_T0096706.1 MGP_C3HHeJ_G0035669.1 mouse_genomes_project X 101711915 101850649 - MGP_C3HHeJ_P0096706 Zdhhc15 protein_coding protein_coding MGP_C3HHeJ_T0095312.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15179903 15369207 - MGP_C3HHeJ_P0095312 Slc9a7 protein_coding protein_coding MGP_C3HHeJ_T0095313.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15180111 15369084 - MGP_C3HHeJ_P0095313 Slc9a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095314.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15180111 15368925 - MGP_C3HHeJ_P0095314 Slc9a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095315.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15193059 15369186 - Slc9a7 protein_coding retained_intron MGP_C3HHeJ_T0095316.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15228028 15369170 - MGP_C3HHeJ_P0095316 Slc9a7 protein_coding protein_coding MGP_C3HHeJ_T0095317.1 MGP_C3HHeJ_G0035276.1 mouse_genomes_project X 15239478 15369207 - Slc9a7 protein_coding retained_intron MGP_C3HHeJ_T0101041.1 MGP_C3HHeJ_G0039235.1 mouse_genomes_project X 101803835 101803942 + Gm22430 snoRNA snoRNA MGP_C3HHeJ_T0016264.1 MGP_C3HHeJ_G0014368.1 mouse_genomes_project X 82424186 82424700 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101048.1 MGP_C3HHeJ_G0039242.1 mouse_genomes_project X 126293109 126293241 - Gm26029 snoRNA snoRNA MGP_C3HHeJ_T0011050.1 MGP_C3HHeJ_G0009183.1 mouse_genomes_project X 48219754 48219838 - Mir19b-2 miRNA miRNA MGP_C3HHeJ_T0096370.1 MGP_C3HHeJ_G0035575.1 mouse_genomes_project X 88097088 88098123 + MGP_C3HHeJ_P0096370 protein_coding protein_coding MGP_C3HHeJ_T0095596.1 MGP_C3HHeJ_G0035363.1 mouse_genomes_project X 43700336 43727185 + MGP_C3HHeJ_P0095596 Utp14a protein_coding protein_coding MGP_C3HHeJ_T0095597.1 MGP_C3HHeJ_G0035363.1 mouse_genomes_project X 43700371 43711159 + Utp14a protein_coding processed_transcript MGP_C3HHeJ_T0095598.1 MGP_C3HHeJ_G0035363.1 mouse_genomes_project X 43700392 43717401 + Utp14a protein_coding processed_transcript MGP_C3HHeJ_T0016369.1 MGP_C3HHeJ_G0014473.1 mouse_genomes_project X 100717611 100718177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016072.1 MGP_C3HHeJ_G0014176.1 mouse_genomes_project X 37068069 37068453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016255.1 MGP_C3HHeJ_G0014359.1 mouse_genomes_project X 81228270 81228582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101067.1 MGP_C3HHeJ_G0039261.1 mouse_genomes_project X 156666301 156666452 + Gm22522 snoRNA snoRNA MGP_C3HHeJ_T0011667.1 MGP_C3HHeJ_G0009800.1 mouse_genomes_project X 97644148 97644476 + Gm22160 misc_RNA misc_RNA MGP_C3HHeJ_T0095410.1 MGP_C3HHeJ_G0035302.1 mouse_genomes_project X 19099290 19100523 - MGP_C3HHeJ_P0095410 Gm4985 protein_coding protein_coding MGP_C3HHeJ_T0016457.1 MGP_C3HHeJ_G0014561.1 mouse_genomes_project X 115281370 115281721 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095599.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43789508 43810253 + Bcorl1 protein_coding processed_transcript MGP_C3HHeJ_T0095600.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43808995 43855251 + MGP_C3HHeJ_P0095600 Bcorl1 protein_coding protein_coding MGP_C3HHeJ_T0095601.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43809366 43827279 + MGP_C3HHeJ_P0095601 Bcorl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095602.1 MGP_C3HHeJ_G0035364.1 mouse_genomes_project X 43817094 43832112 + MGP_C3HHeJ_P0095602 Bcorl1 protein_coding protein_coding MGP_C3HHeJ_T0016020.1 MGP_C3HHeJ_G0014124.1 mouse_genomes_project X 12655881 12657736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011686.1 MGP_C3HHeJ_G0009819.1 mouse_genomes_project X 142497310 142497632 + Gm26024 misc_RNA misc_RNA MGP_C3HHeJ_T0016252.1 MGP_C3HHeJ_G0014356.1 mouse_genomes_project X 78986944 78987746 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016542.1 MGP_C3HHeJ_G0014646.1 mouse_genomes_project X 137342729 137342835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016524.1 MGP_C3HHeJ_G0014628.1 mouse_genomes_project X 134379777 134380195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016526.1 MGP_C3HHeJ_G0014630.1 mouse_genomes_project X 134501522 134501818 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011062.1 MGP_C3HHeJ_G0009195.1 mouse_genomes_project X 54990607 54990686 - Mir504 miRNA miRNA MGP_C3HHeJ_T0011029.1 MGP_C3HHeJ_G0009162.1 mouse_genomes_project X 2479345 2479466 + Mir1198 miRNA miRNA MGP_C3HHeJ_T0096616.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98348099 98358743 + MGP_C3HHeJ_P0096616 Nono protein_coding protein_coding MGP_C3HHeJ_T0096617.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98348336 98368199 + MGP_C3HHeJ_P0096617 Nono protein_coding protein_coding MGP_C3HHeJ_T0096618.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98348514 98362032 + Nono protein_coding retained_intron MGP_C3HHeJ_T0096619.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98362191 98363932 + Nono protein_coding retained_intron MGP_C3HHeJ_T0096620.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98362906 98367503 + Nono protein_coding retained_intron MGP_C3HHeJ_T0096621.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98364333 98367304 + Nono protein_coding processed_transcript MGP_C3HHeJ_T0096622.1 MGP_C3HHeJ_G0035638.1 mouse_genomes_project X 98365423 98367419 + Nono protein_coding retained_intron MGP_C3HHeJ_T0016253.1 MGP_C3HHeJ_G0014357.1 mouse_genomes_project X 79061129 79062098 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011660.1 MGP_C3HHeJ_G0009793.1 mouse_genomes_project X 45429414 45429709 + Gm23385 misc_RNA misc_RNA MGP_C3HHeJ_T0096104.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542404 70544301 + protein_coding processed_transcript MGP_C3HHeJ_T0096105.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542409 70545898 + MGP_C3HHeJ_P0096105 protein_coding protein_coding MGP_C3HHeJ_T0096106.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542502 70543761 + protein_coding retained_intron MGP_C3HHeJ_T0096107.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542525 70545873 + MGP_C3HHeJ_P0096107 protein_coding protein_coding MGP_C3HHeJ_T0096108.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542532 70544463 + protein_coding retained_intron MGP_C3HHeJ_T0096109.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542955 70545832 + protein_coding retained_intron MGP_C3HHeJ_T0096110.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70542988 70543781 + protein_coding retained_intron MGP_C3HHeJ_T0096111.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70543289 70543951 + protein_coding retained_intron MGP_C3HHeJ_T0096112.1 MGP_C3HHeJ_G0035507.1 mouse_genomes_project X 70543383 70544344 + protein_coding retained_intron MGP_C3HHeJ_T0096030.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180007 70189640 - MGP_C3HHeJ_P0096030 Renbp protein_coding protein_coding MGP_C3HHeJ_T0096031.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180007 70189582 - MGP_C3HHeJ_P0096031 Renbp protein_coding protein_coding MGP_C3HHeJ_T0096032.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180008 70184287 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096033.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180009 70189607 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096034.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70180025 70189546 - MGP_C3HHeJ_P0096034 Renbp protein_coding protein_coding MGP_C3HHeJ_T0096035.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70183148 70187919 - Renbp protein_coding processed_transcript MGP_C3HHeJ_T0096036.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70184152 70186515 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096037.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70186673 70189531 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0096038.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70187931 70189535 - MGP_C3HHeJ_P0096038 Renbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096039.1 MGP_C3HHeJ_G0035498.1 mouse_genomes_project X 70188378 70189542 - Renbp protein_coding retained_intron MGP_C3HHeJ_T0016584.1 MGP_C3HHeJ_G0014688.1 mouse_genomes_project X 143338191 143339139 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016550.1 MGP_C3HHeJ_G0014654.1 mouse_genomes_project X 138954960 138955742 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096926.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462106 131519831 - MGP_C3HHeJ_P0096926 Trmt2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096927.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462862 131519831 - MGP_C3HHeJ_P0096927 Trmt2b protein_coding protein_coding MGP_C3HHeJ_T0096928.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462863 131519776 - Trmt2b protein_coding retained_intron MGP_C3HHeJ_T0096929.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131462867 131519769 - MGP_C3HHeJ_P0096929 Trmt2b protein_coding protein_coding MGP_C3HHeJ_T0096930.1 MGP_C3HHeJ_G0035741.1 mouse_genomes_project X 131503530 131519833 - MGP_C3HHeJ_P0096930 Trmt2b protein_coding protein_coding MGP_C3HHeJ_T0096371.1 MGP_C3HHeJ_G0035576.1 mouse_genomes_project X 88279106 88282581 + MGP_C3HHeJ_P0096371 Mageb5 protein_coding protein_coding MGP_C3HHeJ_T0096465.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93307466 93427203 + MGP_C3HHeJ_P0096465 Heph protein_coding protein_coding MGP_C3HHeJ_T0096466.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308480 93384686 + MGP_C3HHeJ_P0096466 Heph protein_coding protein_coding MGP_C3HHeJ_T0096467.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308497 93427200 + MGP_C3HHeJ_P0096467 Heph protein_coding protein_coding MGP_C3HHeJ_T0096468.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308535 93329895 + Heph protein_coding retained_intron MGP_C3HHeJ_T0096469.1 MGP_C3HHeJ_G0035603.1 mouse_genomes_project X 93308535 93342063 + Heph protein_coding retained_intron MGP_C3HHeJ_T0005507.1 MGP_C3HHeJ_G0004633.1 mouse_genomes_project X 47757457 47796320 + Gm14582 antisense antisense MGP_C3HHeJ_T0016155.1 MGP_C3HHeJ_G0014259.1 mouse_genomes_project X 57580041 57580619 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096288.1 MGP_C3HHeJ_G0035543.1 mouse_genomes_project X 72656546 72659981 + MGP_C3HHeJ_P0096288 protein_coding protein_coding MGP_C3HHeJ_T0099806.1 MGP_C3HHeJ_G0038000.1 mouse_genomes_project X 149338581 149338731 + Gm22248 snRNA snRNA MGP_C3HHeJ_T0011671.1 MGP_C3HHeJ_G0009804.1 mouse_genomes_project X 100602971 100603094 + Gm27875 misc_RNA misc_RNA MGP_C3HHeJ_T0097009.1 MGP_C3HHeJ_G0035768.1 mouse_genomes_project X 133064407 133068997 + MGP_C3HHeJ_P0097009 Armcx5 protein_coding protein_coding MGP_C3HHeJ_T0097014.1 MGP_C3HHeJ_G0035768.1 mouse_genomes_project X 133064409 133067081 + Armcx5 protein_coding retained_intron MGP_C3HHeJ_T0011127.1 MGP_C3HHeJ_G0009260.1 mouse_genomes_project X 144727761 144727847 + Mir1264 miRNA miRNA MGP_C3HHeJ_T0096574.1 MGP_C3HHeJ_G0035631.1 mouse_genomes_project X 98167413 98170013 - Gm614 protein_coding processed_transcript MGP_C3HHeJ_T0096575.1 MGP_C3HHeJ_G0035631.1 mouse_genomes_project X 98167413 98170030 - MGP_C3HHeJ_P0096575 Gm614 protein_coding protein_coding MGP_C3HHeJ_T0016627.1 MGP_C3HHeJ_G0014731.1 mouse_genomes_project X 153406948 153407650 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016447.1 MGP_C3HHeJ_G0014551.1 mouse_genomes_project X 114076119 114076507 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099744.1 MGP_C3HHeJ_G0037938.1 mouse_genomes_project X 9296048 9296239 - Gm25202 snRNA snRNA MGP_C3HHeJ_T0016282.1 MGP_C3HHeJ_G0014386.1 mouse_genomes_project X 85882454 85882962 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096867.1 MGP_C3HHeJ_G0035719.1 mouse_genomes_project X 114186887 114187360 + MGP_C3HHeJ_P0096867 Gm14920 protein_coding protein_coding MGP_C3HHeJ_T0099802.1 MGP_C3HHeJ_G0037996.1 mouse_genomes_project X 142834240 142834385 + Gm25097 snRNA snRNA MGP_C3HHeJ_T0097624.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163371952 163420832 - MGP_C3HHeJ_P0097624 Mospd2 protein_coding protein_coding MGP_C3HHeJ_T0097625.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163372101 163420754 - MGP_C3HHeJ_P0097625 Mospd2 protein_coding protein_coding MGP_C3HHeJ_T0097626.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163373992 163420792 - MGP_C3HHeJ_P0097626 Mospd2 protein_coding protein_coding MGP_C3HHeJ_T0097627.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163394750 163420785 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097628.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163394755 163420785 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097629.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163399834 163420782 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097630.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163403603 163420784 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0097631.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163403929 163420800 - Mospd2 protein_coding processed_transcript MGP_C3HHeJ_T0097632.1 MGP_C3HHeJ_G0035929.1 mouse_genomes_project X 163420117 163420779 - Mospd2 protein_coding retained_intron MGP_C3HHeJ_T0095126.1 MGP_C3HHeJ_G0035215.1 mouse_genomes_project X 2595188 2599777 + MGP_C3HHeJ_P0095126 Pcsk1n protein_coding protein_coding MGP_C3HHeJ_T0015967.1 MGP_C3HHeJ_G0014071.1 mouse_genomes_project X 2180628 2181191 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016673.1 MGP_C3HHeJ_G0014777.1 mouse_genomes_project X 161673986 161674452 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011033.1 MGP_C3HHeJ_G0009166.1 mouse_genomes_project X 14200088 14200183 - Mir221 miRNA miRNA MGP_C3HHeJ_T0095934.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69896747 69901606 - MGP_C3HHeJ_P0095934 Pnck protein_coding protein_coding MGP_C3HHeJ_T0095935.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69896747 69901710 - MGP_C3HHeJ_P0095935 Pnck protein_coding protein_coding MGP_C3HHeJ_T0095936.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69896748 69901999 - MGP_C3HHeJ_P0095936 Pnck protein_coding protein_coding MGP_C3HHeJ_T0095937.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69897004 69898585 - Pnck protein_coding retained_intron MGP_C3HHeJ_T0095938.1 MGP_C3HHeJ_G0035485.1 mouse_genomes_project X 69898029 69901315 - MGP_C3HHeJ_P0095938 Pnck protein_coding protein_coding MGP_C3HHeJ_T0097579.1 MGP_C3HHeJ_G0035914.1 mouse_genomes_project X 161925668 161964965 - MGP_C3HHeJ_P0097579 Grpr protein_coding protein_coding MGP_C3HHeJ_T0016534.1 MGP_C3HHeJ_G0014638.1 mouse_genomes_project X 135563614 135563821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016035.1 MGP_C3HHeJ_G0014139.1 mouse_genomes_project X 15630218 15631545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002445.1 MGP_C3HHeJ_G0002363.1 mouse_genomes_project X 125529057 125530122 + TEC TEC MGP_C3HHeJ_T0095478.1 MGP_C3HHeJ_G0035334.1 mouse_genomes_project X 33416697 33425331 + MGP_C3HHeJ_P0095478 Rhox13 protein_coding protein_coding MGP_C3HHeJ_T0011125.1 MGP_C3HHeJ_G0009258.1 mouse_genomes_project X 144715228 144715336 + Mir764 miRNA miRNA MGP_C3HHeJ_T0018377.1 MGP_C3HHeJ_G0015530.1 mouse_genomes_project X 7691792 7752260 + Gm14634 processed_transcript processed_transcript MGP_C3HHeJ_T0018378.1 MGP_C3HHeJ_G0015530.1 mouse_genomes_project X 7692058 7748987 + Gm14634 processed_transcript processed_transcript MGP_C3HHeJ_T0011061.1 MGP_C3HHeJ_G0009194.1 mouse_genomes_project X 52422103 52422166 - Mir5116 miRNA miRNA MGP_C3HHeJ_T0097471.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157483414 157652768 + MGP_C3HHeJ_P0097471 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097472.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157536417 157591722 + MGP_C3HHeJ_P0097472 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097473.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157537121 157656510 + MGP_C3HHeJ_P0097473 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097474.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157537188 157608963 + MGP_C3HHeJ_P0097474 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097475.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157537389 157609053 + MGP_C3HHeJ_P0097475 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097476.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157557345 157607461 + MGP_C3HHeJ_P0097476 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097477.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157583477 157611466 + MGP_C3HHeJ_P0097477 Rps6ka3 protein_coding protein_coding MGP_C3HHeJ_T0097478.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157650586 157651771 + Rps6ka3 protein_coding processed_transcript MGP_C3HHeJ_T0097479.1 MGP_C3HHeJ_G0035892.1 mouse_genomes_project X 157650671 157652006 + Rps6ka3 protein_coding retained_intron MGP_C3HHeJ_T0095910.1 MGP_C3HHeJ_G0035474.1 mouse_genomes_project X 69311367 69321539 - MGP_C3HHeJ_P0095910 protein_coding protein_coding MGP_C3HHeJ_T0016471.1 MGP_C3HHeJ_G0014575.1 mouse_genomes_project X 119122225 119123344 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015978.1 MGP_C3HHeJ_G0014082.1 mouse_genomes_project X 3416278 3416638 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097152.1 MGP_C3HHeJ_G0035814.1 mouse_genomes_project X 138385853 138390980 - MGP_C3HHeJ_P0097152 Tex13 protein_coding protein_coding MGP_C3HHeJ_T0097153.1 MGP_C3HHeJ_G0035814.1 mouse_genomes_project X 138386814 138388399 - Tex13 protein_coding retained_intron MGP_C3HHeJ_T0016120.1 MGP_C3HHeJ_G0014224.1 mouse_genomes_project X 49315467 49315668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099794.1 MGP_C3HHeJ_G0037988.1 mouse_genomes_project X 113520955 113521119 + Gm24624 snRNA snRNA MGP_C3HHeJ_T0016200.1 MGP_C3HHeJ_G0014304.1 mouse_genomes_project X 68875900 68876236 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016106.1 MGP_C3HHeJ_G0014210.1 mouse_genomes_project X 46475937 46476794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095430.1 MGP_C3HHeJ_G0035310.1 mouse_genomes_project X 31837255 31876059 - MGP_C3HHeJ_P0095430 Akap17b protein_coding protein_coding MGP_C3HHeJ_T0095431.1 MGP_C3HHeJ_G0035310.1 mouse_genomes_project X 31840820 31875760 - MGP_C3HHeJ_P0095431 Akap17b protein_coding protein_coding MGP_C3HHeJ_T0096756.1 MGP_C3HHeJ_G0035681.1 mouse_genomes_project X 103429398 103442344 - MGP_C3HHeJ_P0096756 Taf9b protein_coding protein_coding MGP_C3HHeJ_T0096757.1 MGP_C3HHeJ_G0035681.1 mouse_genomes_project X 103429398 103441087 - MGP_C3HHeJ_P0096757 Taf9b protein_coding protein_coding MGP_C3HHeJ_T0096758.1 MGP_C3HHeJ_G0035681.1 mouse_genomes_project X 103439525 103441936 - MGP_C3HHeJ_P0096758 Taf9b protein_coding protein_coding MGP_C3HHeJ_T0016113.1 MGP_C3HHeJ_G0014217.1 mouse_genomes_project X 47294635 47295168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098307.1 MGP_C3HHeJ_G0036519.1 mouse_genomes_project X 118506555 118506676 - Gm25825 scaRNA scaRNA MGP_C3HHeJ_T0011683.1 MGP_C3HHeJ_G0009816.1 mouse_genomes_project X 135626462 135626721 - Gm24675 misc_RNA misc_RNA MGP_C3HHeJ_T0097183.1 MGP_C3HHeJ_G0035827.1 mouse_genomes_project X 140301161 140464632 + MGP_C3HHeJ_P0097183 Tmem164 protein_coding protein_coding MGP_C3HHeJ_T0097184.1 MGP_C3HHeJ_G0035827.1 mouse_genomes_project X 140302606 140392790 + Tmem164 protein_coding retained_intron MGP_C3HHeJ_T0097185.1 MGP_C3HHeJ_G0035827.1 mouse_genomes_project X 140392492 140469746 + MGP_C3HHeJ_P0097185 Tmem164 protein_coding protein_coding MGP_C3HHeJ_T0015964.1 MGP_C3HHeJ_G0014068.1 mouse_genomes_project X 687772 688363 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097154.1 MGP_C3HHeJ_G0035815.1 mouse_genomes_project X 138483432 138515347 + MGP_C3HHeJ_P0097154 Vsig1 protein_coding protein_coding MGP_C3HHeJ_T0097155.1 MGP_C3HHeJ_G0035815.1 mouse_genomes_project X 138499080 138514108 + Vsig1 protein_coding processed_transcript MGP_C3HHeJ_T0101312.1 MGP_C3HHeJ_G0039401.1 mouse_genomes_project X 127675387 127676096 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096395.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90824685 90879337 - MGP_C3HHeJ_P0096395 Zfx protein_coding protein_coding MGP_C3HHeJ_T0096396.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90834033 90879305 - MGP_C3HHeJ_P0096396 Zfx protein_coding protein_coding MGP_C3HHeJ_T0096397.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90851680 90879039 - MGP_C3HHeJ_P0096397 Zfx protein_coding protein_coding MGP_C3HHeJ_T0096398.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90852178 90879612 - Zfx protein_coding processed_transcript MGP_C3HHeJ_T0096399.1 MGP_C3HHeJ_G0035586.1 mouse_genomes_project X 90869778 90879062 - Zfx protein_coding retained_intron MGP_C3HHeJ_T0099799.1 MGP_C3HHeJ_G0037993.1 mouse_genomes_project X 135784875 135784982 - Gm22057 snRNA snRNA MGP_C3HHeJ_T0016418.1 MGP_C3HHeJ_G0014522.1 mouse_genomes_project X 109214216 109214947 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095704.1 MGP_C3HHeJ_G0035405.1 mouse_genomes_project X 52157203 52176340 + MGP_C3HHeJ_P0095704 Zfp449 protein_coding protein_coding MGP_C3HHeJ_T0016359.1 MGP_C3HHeJ_G0014463.1 mouse_genomes_project X 100322372 100322891 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018381.1 MGP_C3HHeJ_G0015532.1 mouse_genomes_project X 14210775 14221410 - Gm14636 processed_transcript processed_transcript MGP_C3HHeJ_T0018382.1 MGP_C3HHeJ_G0015532.1 mouse_genomes_project X 14216229 14221419 - Gm14636 processed_transcript processed_transcript MGP_C3HHeJ_T0095473.1 MGP_C3HHeJ_G0035331.1 mouse_genomes_project X 33349761 33363214 + MGP_C3HHeJ_P0095473 Rhox10 protein_coding protein_coding MGP_C3HHeJ_T0097301.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148917233 148952502 - MGP_C3HHeJ_P0097301 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0097302.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148917233 148952502 - MGP_C3HHeJ_P0097302 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0097303.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148922310 148928411 - Gnl3l protein_coding retained_intron MGP_C3HHeJ_T0097304.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148931581 148934176 - Gnl3l protein_coding retained_intron MGP_C3HHeJ_T0097305.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148931951 148952502 - MGP_C3HHeJ_P0097305 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0097306.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148936606 148952502 - MGP_C3HHeJ_P0097306 Gnl3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097307.1 MGP_C3HHeJ_G0035848.1 mouse_genomes_project X 148936650 148952502 - MGP_C3HHeJ_P0097307 Gnl3l protein_coding protein_coding MGP_C3HHeJ_T0096946.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131803022 131847628 - MGP_C3HHeJ_P0096946 Btk protein_coding protein_coding MGP_C3HHeJ_T0096947.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131803056 131847616 - MGP_C3HHeJ_P0096947 Btk protein_coding protein_coding MGP_C3HHeJ_T0096948.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131809912 131847628 - Btk protein_coding retained_intron MGP_C3HHeJ_T0096949.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131833140 131846961 - Btk protein_coding processed_transcript MGP_C3HHeJ_T0096950.1 MGP_C3HHeJ_G0035746.1 mouse_genomes_project X 131837420 131848057 - Btk protein_coding processed_transcript MGP_C3HHeJ_T0095373.1 MGP_C3HHeJ_G0035289.1 mouse_genomes_project X 16053931 16071145 - MGP_C3HHeJ_P0095373 Elk1 protein_coding protein_coding MGP_C3HHeJ_T0095374.1 MGP_C3HHeJ_G0035289.1 mouse_genomes_project X 16060257 16071145 - Elk1 protein_coding retained_intron MGP_C3HHeJ_T0096018.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174734 70177724 - Naa10 protein_coding processed_transcript MGP_C3HHeJ_T0096019.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174734 70179831 - MGP_C3HHeJ_P0096019 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096020.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174736 70179811 - MGP_C3HHeJ_P0096020 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096021.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174748 70179775 - MGP_C3HHeJ_P0096021 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096022.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174757 70179771 - MGP_C3HHeJ_P0096022 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096023.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174781 70179719 - MGP_C3HHeJ_P0096023 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096024.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70174953 70177766 - Naa10 protein_coding processed_transcript MGP_C3HHeJ_T0096025.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70175335 70179715 - MGP_C3HHeJ_P0096025 Naa10 protein_coding protein_coding MGP_C3HHeJ_T0096026.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70175722 70178324 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0096027.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70175930 70179793 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0096028.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70178863 70179742 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0096029.1 MGP_C3HHeJ_G0035497.1 mouse_genomes_project X 70178999 70179739 - Naa10 protein_coding retained_intron MGP_C3HHeJ_T0095000.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1787883 1823820 - MGP_C3HHeJ_P0095000 Clcn5 protein_coding protein_coding MGP_C3HHeJ_T0095001.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1793542 1959812 - MGP_C3HHeJ_P0095001 Clcn5 protein_coding protein_coding MGP_C3HHeJ_T0095002.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1794250 1823779 - Clcn5 protein_coding retained_intron MGP_C3HHeJ_T0095003.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1805272 1959937 - MGP_C3HHeJ_P0095003 Clcn5 protein_coding protein_coding MGP_C3HHeJ_T0095004.1 MGP_C3HHeJ_G0035191.1 mouse_genomes_project X 1847928 1959749 - Clcn5 protein_coding processed_transcript MGP_C3HHeJ_T0016678.1 MGP_C3HHeJ_G0014782.1 mouse_genomes_project X 162898325 162901260 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016411.1 MGP_C3HHeJ_G0014515.1 mouse_genomes_project X 107195845 107197397 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016498.1 MGP_C3HHeJ_G0014602.1 mouse_genomes_project X 130329855 130331478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016094.1 MGP_C3HHeJ_G0014198.1 mouse_genomes_project X 42799890 42800856 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018383.1 MGP_C3HHeJ_G0015533.1 mouse_genomes_project X 16082220 16107614 + A230072C01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018384.1 MGP_C3HHeJ_G0015533.1 mouse_genomes_project X 16082650 16107628 + A230072C01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016290.1 MGP_C3HHeJ_G0014394.1 mouse_genomes_project X 88166274 88166662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095628.1 MGP_C3HHeJ_G0035371.1 mouse_genomes_project X 44154314 44163281 + MGP_C3HHeJ_P0095628 Rbmx2 protein_coding protein_coding MGP_C3HHeJ_T0095629.1 MGP_C3HHeJ_G0035371.1 mouse_genomes_project X 44158847 44161624 + Rbmx2 protein_coding processed_transcript MGP_C3HHeJ_T0096255.1 MGP_C3HHeJ_G0035534.1 mouse_genomes_project X 71460054 71477752 - MGP_C3HHeJ_P0096255 Smim9 protein_coding protein_coding MGP_C3HHeJ_T0096256.1 MGP_C3HHeJ_G0035534.1 mouse_genomes_project X 71460232 71475619 - MGP_C3HHeJ_P0096256 Smim9 protein_coding protein_coding MGP_C3HHeJ_T0096257.1 MGP_C3HHeJ_G0035534.1 mouse_genomes_project X 71463119 71477769 - Smim9 protein_coding processed_transcript MGP_C3HHeJ_T0011662.1 MGP_C3HHeJ_G0009795.1 mouse_genomes_project X 62544660 62544925 + Gm23028 misc_RNA misc_RNA MGP_C3HHeJ_T0015990.1 MGP_C3HHeJ_G0014094.1 mouse_genomes_project X 5905591 5906084 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095110.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557475 2567932 + MGP_C3HHeJ_P0095110 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095111.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557678 2567904 + MGP_C3HHeJ_P0095111 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095112.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557757 2567467 + MGP_C3HHeJ_P0095112 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095113.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2557812 2567902 + MGP_C3HHeJ_P0095113 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095114.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2559270 2567900 + MGP_C3HHeJ_P0095114 Slc35a2 protein_coding protein_coding MGP_C3HHeJ_T0095115.1 MGP_C3HHeJ_G0035210.1 mouse_genomes_project X 2566460 2567904 + Slc35a2 protein_coding processed_transcript MGP_C3HHeJ_T0016233.1 MGP_C3HHeJ_G0014337.1 mouse_genomes_project X 74690126 74690646 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016476.1 MGP_C3HHeJ_G0014580.1 mouse_genomes_project X 123492041 123492704 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016505.1 MGP_C3HHeJ_G0014609.1 mouse_genomes_project X 132111572 132112478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016124.1 MGP_C3HHeJ_G0014228.1 mouse_genomes_project X 51582757 51583637 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095675.1 MGP_C3HHeJ_G0035388.1 mouse_genomes_project X 47499398 47614839 - MGP_C3HHeJ_P0095675 Gpc4 protein_coding protein_coding MGP_C3HHeJ_T0016170.1 MGP_C3HHeJ_G0014274.1 mouse_genomes_project X 61090834 61091737 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011119.1 MGP_C3HHeJ_G0009252.1 mouse_genomes_project X 133535743 133535859 + Mir6383 miRNA miRNA MGP_C3HHeJ_T0102349.1 MGP_C3HHeJ_G0040312.1 mouse_genomes_project X 71279956 71280094 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011096.1 MGP_C3HHeJ_G0009229.1 mouse_genomes_project X 81967639 81967722 + Gm44378 miRNA miRNA MGP_C3HHeJ_T0016209.1 MGP_C3HHeJ_G0014313.1 mouse_genomes_project X 70796950 70797421 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016518.1 MGP_C3HHeJ_G0014622.1 mouse_genomes_project X 133931332 133932454 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096994.1 MGP_C3HHeJ_G0035760.1 mouse_genomes_project X 132731889 132742988 + MGP_C3HHeJ_P0096994 protein_coding protein_coding MGP_C3HHeJ_T0011095.1 MGP_C3HHeJ_G0009228.1 mouse_genomes_project X 75203988 75204080 - Gm23556 miRNA miRNA MGP_C3HHeJ_T0009338.1 MGP_C3HHeJ_G0007482.1 mouse_genomes_project X 116856384 116858403 - Gm14929 lincRNA lincRNA MGP_C3HHeJ_T0016316.1 MGP_C3HHeJ_G0014420.1 mouse_genomes_project X 91455885 91457503 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016025.1 MGP_C3HHeJ_G0014129.1 mouse_genomes_project X 13982839 13983456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016541.1 MGP_C3HHeJ_G0014645.1 mouse_genomes_project X 137254726 137255381 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097444.1 MGP_C3HHeJ_G0035884.1 mouse_genomes_project X 153860734 154589383 + MGP_C3HHeJ_P0097444 Gm15155 protein_coding protein_coding MGP_C3HHeJ_T0016235.1 MGP_C3HHeJ_G0014339.1 mouse_genomes_project X 74715221 74716299 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011066.1 MGP_C3HHeJ_G0009199.1 mouse_genomes_project X 62838397 62838459 - Mir743 miRNA miRNA MGP_C3HHeJ_T0097455.1 MGP_C3HHeJ_G0035888.1 mouse_genomes_project X 155819847 155822714 - MGP_C3HHeJ_P0097455 Yy2 protein_coding protein_coding MGP_C3HHeJ_T0096557.1 MGP_C3HHeJ_G0035627.1 mouse_genomes_project X 97732918 97952183 - MGP_C3HHeJ_P0096557 Tex11 protein_coding protein_coding MGP_C3HHeJ_T0096558.1 MGP_C3HHeJ_G0035627.1 mouse_genomes_project X 97732918 97952211 - MGP_C3HHeJ_P0096558 Tex11 protein_coding protein_coding MGP_C3HHeJ_T0096559.1 MGP_C3HHeJ_G0035627.1 mouse_genomes_project X 97765658 97952211 - MGP_C3HHeJ_P0096559 Tex11 protein_coding protein_coding MGP_C3HHeJ_T0016364.1 MGP_C3HHeJ_G0014468.1 mouse_genomes_project X 100595881 100596336 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011043.1 MGP_C3HHeJ_G0009176.1 mouse_genomes_project X 37325096 37325223 + Gm44490 miRNA miRNA MGP_C3HHeJ_T0016459.1 MGP_C3HHeJ_G0014563.1 mouse_genomes_project X 115859201 115860310 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097660.1 MGP_C3HHeJ_G0035938.1 mouse_genomes_project X 164944233 164957027 - MGP_C3HHeJ_P0097660 Tceanc protein_coding protein_coding MGP_C3HHeJ_T0097661.1 MGP_C3HHeJ_G0035938.1 mouse_genomes_project X 164946732 164947812 - MGP_C3HHeJ_P0097661 Tceanc protein_coding protein_coding MGP_C3HHeJ_T0097662.1 MGP_C3HHeJ_G0035938.1 mouse_genomes_project X 164947706 164965718 - MGP_C3HHeJ_P0097662 Tceanc protein_coding protein_coding MGP_C3HHeJ_T0101015.1 MGP_C3HHeJ_G0039209.1 mouse_genomes_project X 1863970 1864046 + Gm26401 snoRNA snoRNA MGP_C3HHeJ_T0016620.1 MGP_C3HHeJ_G0014724.1 mouse_genomes_project X 152569010 152569657 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095568.1 MGP_C3HHeJ_G0035356.1 mouse_genomes_project X 41750803 41752142 + MGP_C3HHeJ_P0095568 Actrt1 protein_coding protein_coding MGP_C3HHeJ_T0016461.1 MGP_C3HHeJ_G0014565.1 mouse_genomes_project X 117085223 117086512 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097419.1 MGP_C3HHeJ_G0035874.1 mouse_genomes_project X 151923345 151924631 + MGP_C3HHeJ_P0097419 Spin2c protein_coding protein_coding MGP_C3HHeJ_T0097420.1 MGP_C3HHeJ_G0035874.1 mouse_genomes_project X 151923361 151924644 + MGP_C3HHeJ_P0097420 Spin2c protein_coding protein_coding MGP_C3HHeJ_T0097421.1 MGP_C3HHeJ_G0035874.1 mouse_genomes_project X 151923413 151925364 + MGP_C3HHeJ_P0097421 Spin2c protein_coding protein_coding MGP_C3HHeJ_T0016657.1 MGP_C3HHeJ_G0014761.1 mouse_genomes_project X 158593809 158594072 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016114.1 MGP_C3HHeJ_G0014218.1 mouse_genomes_project X 48249506 48249918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005543.1 MGP_C3HHeJ_G0004660.1 mouse_genomes_project X 158860197 158865935 - Gm15243 antisense antisense MGP_C3HHeJ_T0015963.1 MGP_C3HHeJ_G0014067.1 mouse_genomes_project X 687772 688282 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016444.1 MGP_C3HHeJ_G0014548.1 mouse_genomes_project X 112959687 112960541 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101057.1 MGP_C3HHeJ_G0039251.1 mouse_genomes_project X 140100682 140100808 - Gm25915 snoRNA snoRNA MGP_C3HHeJ_T0097612.1 MGP_C3HHeJ_G0035925.1 mouse_genomes_project X 162802720 162836106 + MGP_C3HHeJ_P0097612 Vegfd protein_coding protein_coding MGP_C3HHeJ_T0097613.1 MGP_C3HHeJ_G0035925.1 mouse_genomes_project X 162823472 162833084 + Vegfd protein_coding retained_intron MGP_C3HHeJ_T0018411.1 MGP_C3HHeJ_G0015542.1 mouse_genomes_project X 97631101 97634694 - Gm14866 processed_transcript processed_transcript MGP_C3HHeJ_T0096772.1 MGP_C3HHeJ_G0035687.1 mouse_genomes_project X 104371374 104390266 + MGP_C3HHeJ_P0096772 P2ry10 protein_coding protein_coding MGP_C3HHeJ_T0096773.1 MGP_C3HHeJ_G0035687.1 mouse_genomes_project X 104372116 104390270 + MGP_C3HHeJ_P0096773 P2ry10 protein_coding protein_coding MGP_C3HHeJ_T0096774.1 MGP_C3HHeJ_G0035687.1 mouse_genomes_project X 104372160 104390270 + MGP_C3HHeJ_P0096774 P2ry10 protein_coding protein_coding MGP_C3HHeJ_T0011059.1 MGP_C3HHeJ_G0009192.1 mouse_genomes_project X 48548396 48548467 - Mir503 miRNA miRNA MGP_C3HHeJ_T0011674.1 MGP_C3HHeJ_G0009807.1 mouse_genomes_project X 100726253 100726380 + Gm27285 misc_RNA misc_RNA MGP_C3HHeJ_T0016470.1 MGP_C3HHeJ_G0014574.1 mouse_genomes_project X 119038823 119041698 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097055.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134439485 134542863 - MGP_C3HHeJ_P0097055 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097056.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134439491 134495952 - MGP_C3HHeJ_P0097056 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097057.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134439491 134542841 - MGP_C3HHeJ_P0097057 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097058.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134441219 134495977 - MGP_C3HHeJ_P0097058 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097059.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134441361 134496009 - MGP_C3HHeJ_P0097059 Slc25a53 protein_coding protein_coding MGP_C3HHeJ_T0097064.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134504500 134534686 - Slc25a53 protein_coding retained_intron MGP_C3HHeJ_T0097065.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134504539 134542865 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097066.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134506273 134542595 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097067.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134506274 134542835 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097068.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134507042 134521706 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097069.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134519226 134542862 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097070.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134534608 134542587 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0097071.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134536397 134542865 - Slc25a53 protein_coding retained_intron MGP_C3HHeJ_T0097072.1 MGP_C3HHeJ_G0035787.1 mouse_genomes_project X 134537004 134542571 - Slc25a53 protein_coding processed_transcript MGP_C3HHeJ_T0016363.1 MGP_C3HHeJ_G0014467.1 mouse_genomes_project X 100440925 100441349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097236.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673377 144796389 + Htr2c protein_coding retained_intron MGP_C3HHeJ_T0097237.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673377 144702355 + Htr2c protein_coding retained_intron MGP_C3HHeJ_T0097238.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673494 144790853 + Htr2c protein_coding processed_transcript MGP_C3HHeJ_T0097239.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673583 144924606 + MGP_C3HHeJ_P0097239 Htr2c protein_coding protein_coding MGP_C3HHeJ_T0097240.1 MGP_C3HHeJ_G0035839.1 mouse_genomes_project X 144673887 144903843 + MGP_C3HHeJ_P0097240 Htr2c protein_coding protein_coding MGP_C3HHeJ_T0101035.1 MGP_C3HHeJ_G0039229.1 mouse_genomes_project X 78688180 78688317 - Gm24706 snoRNA snoRNA MGP_C3HHeJ_T0096659.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99211601 99216402 - MGP_C3HHeJ_P0096659 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096660.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99211624 99216073 - MGP_C3HHeJ_P0096660 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096661.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99211934 99215167 - MGP_C3HHeJ_P0096661 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096662.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99212041 99214996 - MGP_C3HHeJ_P0096662 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0096663.1 MGP_C3HHeJ_G0035650.1 mouse_genomes_project X 99212106 99216139 - MGP_C3HHeJ_P0096663 Cited1 protein_coding protein_coding MGP_C3HHeJ_T0099745.1 MGP_C3HHeJ_G0037939.1 mouse_genomes_project X 10707155 10707262 - Gm25207 snRNA snRNA MGP_C3HHeJ_T0016423.1 MGP_C3HHeJ_G0014527.1 mouse_genomes_project X 109952408 109952571 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016402.1 MGP_C3HHeJ_G0014506.1 mouse_genomes_project X 104535634 104536105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016175.1 MGP_C3HHeJ_G0014279.1 mouse_genomes_project X 63047431 63048868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095912.1 MGP_C3HHeJ_G0035476.1 mouse_genomes_project X 69355989 69363889 + MGP_C3HHeJ_P0095912 protein_coding protein_coding MGP_C3HHeJ_T0016082.1 MGP_C3HHeJ_G0014186.1 mouse_genomes_project X 39104222 39104940 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101071.1 MGP_C3HHeJ_G0039265.1 mouse_genomes_project X 165845466 165845584 - Gm26368 snoRNA snoRNA MGP_C3HHeJ_T0095128.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2605594 2623962 - MGP_C3HHeJ_P0095128 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095129.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2605596 2623962 - MGP_C3HHeJ_P0095129 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095130.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2605598 2623911 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095131.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2606833 2623962 - MGP_C3HHeJ_P0095131 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095132.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2607029 2610062 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095133.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2613374 2614725 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095134.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2613481 2616017 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095135.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2619429 2623232 - Hdac6 protein_coding retained_intron MGP_C3HHeJ_T0095136.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2619453 2623626 - MGP_C3HHeJ_P0095136 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0095137.1 MGP_C3HHeJ_G0035217.1 mouse_genomes_project X 2623024 2623840 - MGP_C3HHeJ_P0095137 Hdac6 protein_coding protein_coding MGP_C3HHeJ_T0011681.1 MGP_C3HHeJ_G0009814.1 mouse_genomes_project X 134152044 134152337 + Gm23068 misc_RNA misc_RNA MGP_C3HHeJ_T0095204.1 MGP_C3HHeJ_G0035238.1 mouse_genomes_project X 3936843 3937722 + MGP_C3HHeJ_P0095204 protein_coding protein_coding MGP_C3HHeJ_T0016009.1 MGP_C3HHeJ_G0014113.1 mouse_genomes_project X 8900706 8902931 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098235.1 MGP_C3HHeJ_G0036447.1 mouse_genomes_project X 160600217 160600345 + Gm27490 rRNA rRNA MGP_C3HHeJ_T0016177.1 MGP_C3HHeJ_G0014281.1 mouse_genomes_project X 63050324 63050849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096289.1 MGP_C3HHeJ_G0035544.1 mouse_genomes_project X 72656553 72659983 + MGP_C3HHeJ_P0096289 Cldn34b3 protein_coding protein_coding MGP_C3HHeJ_T0097578.1 MGP_C3HHeJ_G0035913.1 mouse_genomes_project X 161358792 161361392 - MGP_C3HHeJ_P0097578 S100g protein_coding protein_coding MGP_C3HHeJ_T0097135.1 MGP_C3HHeJ_G0035809.1 mouse_genomes_project X 137611957 137657518 + MGP_C3HHeJ_P0097135 Pih1h3b protein_coding protein_coding MGP_C3HHeJ_T0096906.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131163959 131188343 - MGP_C3HHeJ_P0096906 Sytl4 protein_coding protein_coding MGP_C3HHeJ_T0096907.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131172538 131207952 - MGP_C3HHeJ_P0096907 Sytl4 protein_coding protein_coding MGP_C3HHeJ_T0096908.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131176396 131187098 - Sytl4 protein_coding processed_transcript MGP_C3HHeJ_T0096909.1 MGP_C3HHeJ_G0035736.1 mouse_genomes_project X 131178438 131207949 - MGP_C3HHeJ_P0096909 Sytl4 protein_coding protein_coding MGP_C3HHeJ_T0016066.1 MGP_C3HHeJ_G0014170.1 mouse_genomes_project X 35382797 35383468 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101055.1 MGP_C3HHeJ_G0039249.1 mouse_genomes_project X 134598581 134598696 - Gm25770 snoRNA snoRNA MGP_C3HHeJ_T0095890.1 MGP_C3HHeJ_G0035465.1 mouse_genomes_project X 68440058 68458848 - MGP_C3HHeJ_P0095890 Gabre protein_coding protein_coding MGP_C3HHeJ_T0095891.1 MGP_C3HHeJ_G0035465.1 mouse_genomes_project X 68445429 68453827 - Gabre protein_coding processed_transcript MGP_C3HHeJ_T0095892.1 MGP_C3HHeJ_G0035465.1 mouse_genomes_project X 68453031 68458848 - Gabre protein_coding retained_intron MGP_C3HHeJ_T0015987.1 MGP_C3HHeJ_G0014091.1 mouse_genomes_project X 4146180 4146444 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095564.1 MGP_C3HHeJ_G0035353.1 mouse_genomes_project X 39741547 39744432 - MGP_C3HHeJ_P0095564 Dcaf12l2 protein_coding protein_coding MGP_C3HHeJ_T0097434.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153478487 153479627 + Acot9 protein_coding processed_transcript MGP_C3HHeJ_T0097435.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153478487 153514996 + MGP_C3HHeJ_P0097435 Acot9 protein_coding protein_coding MGP_C3HHeJ_T0097436.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153478549 153514988 + MGP_C3HHeJ_P0097436 Acot9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097437.1 MGP_C3HHeJ_G0035881.1 mouse_genomes_project X 153511184 153514255 + Acot9 protein_coding retained_intron MGP_C3HHeJ_T0016508.1 MGP_C3HHeJ_G0014612.1 mouse_genomes_project X 132190710 132191343 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016437.1 MGP_C3HHeJ_G0014541.1 mouse_genomes_project X 112015795 112016002 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016376.1 MGP_C3HHeJ_G0014480.1 mouse_genomes_project X 101068402 101069851 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016523.1 MGP_C3HHeJ_G0014627.1 mouse_genomes_project X 134346667 134347125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015995.1 MGP_C3HHeJ_G0014099.1 mouse_genomes_project X 6822583 6822782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018375.1 MGP_C3HHeJ_G0015528.1 mouse_genomes_project X 2373706 2383185 + processed_transcript processed_transcript MGP_C3HHeJ_T0101060.1 MGP_C3HHeJ_G0039254.1 mouse_genomes_project X 145213900 145214029 - Gm25107 snoRNA snoRNA MGP_C3HHeJ_T0096220.1 MGP_C3HHeJ_G0035521.1 mouse_genomes_project X 70866893 70867829 - MGP_C3HHeJ_P0096220 Olfr1326-ps1 protein_coding protein_coding MGP_C3HHeJ_T0095199.1 MGP_C3HHeJ_G0035233.1 mouse_genomes_project X 3446865 3448577 - MGP_C3HHeJ_P0095199 protein_coding protein_coding MGP_C3HHeJ_T0096080.1 MGP_C3HHeJ_G0035503.1 mouse_genomes_project X 70416322 70432367 - MGP_C3HHeJ_P0096080 Tex28 protein_coding protein_coding MGP_C3HHeJ_T0096081.1 MGP_C3HHeJ_G0035503.1 mouse_genomes_project X 70416322 70432367 - MGP_C3HHeJ_P0096081 Tex28 protein_coding protein_coding MGP_C3HHeJ_T0016633.1 MGP_C3HHeJ_G0014737.1 mouse_genomes_project X 155023332 155023615 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097037.1 MGP_C3HHeJ_G0035777.1 mouse_genomes_project X 133602638 133605448 + MGP_C3HHeJ_P0097037 Wbp5 protein_coding protein_coding MGP_C3HHeJ_T0097038.1 MGP_C3HHeJ_G0035777.1 mouse_genomes_project X 133603242 133605448 + MGP_C3HHeJ_P0097038 Wbp5 protein_coding protein_coding MGP_C3HHeJ_T0095459.1 MGP_C3HHeJ_G0035320.1 mouse_genomes_project X 32386926 32411614 + MGP_C3HHeJ_P0095459 Nkap protein_coding protein_coding MGP_C3HHeJ_T0095460.1 MGP_C3HHeJ_G0035320.1 mouse_genomes_project X 32396418 32401736 + Nkap protein_coding retained_intron MGP_C3HHeJ_T0016631.1 MGP_C3HHeJ_G0014735.1 mouse_genomes_project X 154773513 154774520 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095691.1 MGP_C3HHeJ_G0035395.1 mouse_genomes_project X 48773982 48801875 + MGP_C3HHeJ_P0095691 Fam122c protein_coding protein_coding MGP_C3HHeJ_T0095692.1 MGP_C3HHeJ_G0035395.1 mouse_genomes_project X 48773982 48831488 + MGP_C3HHeJ_P0095692 Fam122c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095693.1 MGP_C3HHeJ_G0035395.1 mouse_genomes_project X 48773991 48831488 + MGP_C3HHeJ_P0095693 Fam122c protein_coding protein_coding MGP_C3HHeJ_T0016015.1 MGP_C3HHeJ_G0014119.1 mouse_genomes_project X 11286455 11286842 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016641.1 MGP_C3HHeJ_G0014745.1 mouse_genomes_project X 155901734 155902330 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097230.1 MGP_C3HHeJ_G0035837.1 mouse_genomes_project X 142967535 143028032 - MGP_C3HHeJ_P0097230 Lhfpl1 protein_coding protein_coding MGP_C3HHeJ_T0097231.1 MGP_C3HHeJ_G0035837.1 mouse_genomes_project X 143020104 143028171 - MGP_C3HHeJ_P0097231 Lhfpl1 protein_coding protein_coding MGP_C3HHeJ_T0099805.1 MGP_C3HHeJ_G0037999.1 mouse_genomes_project X 149210775 149210879 - Gm26441 snRNA snRNA MGP_C3HHeJ_T0095219.1 MGP_C3HHeJ_G0035246.1 mouse_genomes_project X 4713063 4713616 + MGP_C3HHeJ_P0095219 4930557A04Rik protein_coding protein_coding MGP_C3HHeJ_T0011069.1 MGP_C3HHeJ_G0009202.1 mouse_genomes_project X 62842160 62842236 - Mir883a miRNA miRNA MGP_C3HHeJ_T0095879.1 MGP_C3HHeJ_G0035460.1 mouse_genomes_project X 68111272 68128470 + MGP_C3HHeJ_P0095879 Gm1141 protein_coding protein_coding MGP_C3HHeJ_T0095880.1 MGP_C3HHeJ_G0035460.1 mouse_genomes_project X 68116951 68124525 + MGP_C3HHeJ_P0095880 Gm1141 protein_coding protein_coding MGP_C3HHeJ_T0016613.1 MGP_C3HHeJ_G0014717.1 mouse_genomes_project X 151166231 151166763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009337.1 MGP_C3HHeJ_G0007481.1 mouse_genomes_project X 114672767 114673136 + Gm28579 lincRNA lincRNA MGP_C3HHeJ_T0016591.1 MGP_C3HHeJ_G0014695.1 mouse_genomes_project X 143971710 143972756 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016002.1 MGP_C3HHeJ_G0014106.1 mouse_genomes_project X 7873933 7875190 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095125.1 MGP_C3HHeJ_G0035214.1 mouse_genomes_project X 2584677 2585169 + MGP_C3HHeJ_P0095125 Gm10490 protein_coding protein_coding MGP_C3HHeJ_T0099742.1 MGP_C3HHeJ_G0037936.1 mouse_genomes_project X 6757028 6757135 + Gm26314 snRNA snRNA MGP_C3HHeJ_T0095922.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69712994 69723199 + Bgn protein_coding processed_transcript MGP_C3HHeJ_T0095923.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69712994 69728711 + MGP_C3HHeJ_P0095923 Bgn protein_coding protein_coding MGP_C3HHeJ_T0095924.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713015 69722851 + Bgn protein_coding retained_intron MGP_C3HHeJ_T0095925.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713025 69715690 + Bgn protein_coding retained_intron MGP_C3HHeJ_T0095926.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713027 69728707 + MGP_C3HHeJ_P0095926 Bgn protein_coding protein_coding MGP_C3HHeJ_T0095927.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69713031 69722835 + Bgn protein_coding retained_intron MGP_C3HHeJ_T0095928.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69722509 69723763 + Bgn protein_coding processed_transcript MGP_C3HHeJ_T0095929.1 MGP_C3HHeJ_G0035482.1 mouse_genomes_project X 69727679 69728704 + Bgn protein_coding processed_transcript MGP_C3HHeJ_T0016053.1 MGP_C3HHeJ_G0014157.1 mouse_genomes_project X 31898718 31899515 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097205.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141496262 141576556 - MGP_C3HHeJ_P0097205 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097206.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141501131 141576449 - MGP_C3HHeJ_P0097206 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097207.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141502202 141576369 - MGP_C3HHeJ_P0097207 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097208.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141503893 141576464 - MGP_C3HHeJ_P0097208 Dcx protein_coding protein_coding MGP_C3HHeJ_T0097209.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141509630 141576295 - Dcx protein_coding retained_intron MGP_C3HHeJ_T0097210.1 MGP_C3HHeJ_G0035833.1 mouse_genomes_project X 141514142 141576364 - Dcx protein_coding retained_intron MGP_C3HHeJ_T0011028.1 MGP_C3HHeJ_G0009161.1 mouse_genomes_project X 1882721 1882817 - Mir532 miRNA miRNA MGP_C3HHeJ_T0095356.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15912848 15979283 + MGP_C3HHeJ_P0095356 Araf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095357.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966698 15979305 + MGP_C3HHeJ_P0095357 Araf protein_coding protein_coding MGP_C3HHeJ_T0095358.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966719 15974296 + Araf protein_coding retained_intron MGP_C3HHeJ_T0095359.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966721 15971074 + MGP_C3HHeJ_P0095359 Araf protein_coding protein_coding MGP_C3HHeJ_T0095360.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966730 15972730 + Araf protein_coding processed_transcript MGP_C3HHeJ_T0095361.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966733 15971059 + MGP_C3HHeJ_P0095361 Araf protein_coding protein_coding MGP_C3HHeJ_T0095362.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966737 15969887 + Araf protein_coding retained_intron MGP_C3HHeJ_T0095363.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15966744 15971620 + MGP_C3HHeJ_P0095363 Araf protein_coding protein_coding MGP_C3HHeJ_T0095364.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15969299 15970384 + Araf protein_coding retained_intron MGP_C3HHeJ_T0095365.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15971587 15978899 + MGP_C3HHeJ_P0095365 Araf protein_coding unknown_likely_coding MGP_C3HHeJ_T0095366.1 MGP_C3HHeJ_G0035285.1 mouse_genomes_project X 15976508 15978994 + MGP_C3HHeJ_P0095366 Araf protein_coding protein_coding MGP_C3HHeJ_T0016656.1 MGP_C3HHeJ_G0014760.1 mouse_genomes_project X 158357658 158358156 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016198.1 MGP_C3HHeJ_G0014302.1 mouse_genomes_project X 67666985 67667290 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097024.1 MGP_C3HHeJ_G0035771.1 mouse_genomes_project X 133414637 133416500 - MGP_C3HHeJ_P0097024 Bex2 protein_coding protein_coding MGP_C3HHeJ_T0096202.1 MGP_C3HHeJ_G0035519.1 mouse_genomes_project X 70689185 70710204 - MGP_C3HHeJ_P0096202 G6pdx protein_coding protein_coding MGP_C3HHeJ_T0096203.1 MGP_C3HHeJ_G0035519.1 mouse_genomes_project X 70690561 70709886 - MGP_C3HHeJ_P0096203 G6pdx protein_coding protein_coding MGP_C3HHeJ_T0096210.1 MGP_C3HHeJ_G0035519.1 mouse_genomes_project X 70708696 70709890 - G6pdx protein_coding retained_intron MGP_C3HHeJ_T0011098.1 MGP_C3HHeJ_G0009231.1 mouse_genomes_project X 91170249 91170359 - Gm44477 miRNA miRNA MGP_C3HHeJ_T0096961.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993511 131997416 + MGP_C3HHeJ_P0096961 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096962.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993518 131997425 + MGP_C3HHeJ_P0096962 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096963.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993536 131994869 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0096964.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993536 131997418 + MGP_C3HHeJ_P0096964 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096965.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993537 131997425 + MGP_C3HHeJ_P0096965 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096966.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993551 131995063 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0096967.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993551 131994584 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0096968.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993561 131997416 + MGP_C3HHeJ_P0096968 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096969.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131993568 131997425 + MGP_C3HHeJ_P0096969 Armcx1 protein_coding protein_coding MGP_C3HHeJ_T0096970.1 MGP_C3HHeJ_G0035751.1 mouse_genomes_project X 131994812 131996023 + Armcx1 protein_coding processed_transcript MGP_C3HHeJ_T0016606.1 MGP_C3HHeJ_G0014710.1 mouse_genomes_project X 149435420 149435576 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016157.1 MGP_C3HHeJ_G0014261.1 mouse_genomes_project X 57794800 57795866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096815.1 MGP_C3HHeJ_G0035701.1 mouse_genomes_project X 108123313 108126244 + MGP_C3HHeJ_P0096815 Pou3f4 protein_coding protein_coding MGP_C3HHeJ_T0096537.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514251 97517307 - Pdzd11 protein_coding retained_intron MGP_C3HHeJ_T0096538.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514254 97517937 - MGP_C3HHeJ_P0096538 Pdzd11 protein_coding protein_coding MGP_C3HHeJ_T0096539.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514276 97517304 - MGP_C3HHeJ_P0096539 Pdzd11 protein_coding protein_coding MGP_C3HHeJ_T0096540.1 MGP_C3HHeJ_G0035623.1 mouse_genomes_project X 97514745 97517640 - Pdzd11 protein_coding processed_transcript MGP_C3HHeJ_T0016499.1 MGP_C3HHeJ_G0014603.1 mouse_genomes_project X 130446931 130447965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016281.1 MGP_C3HHeJ_G0014385.1 mouse_genomes_project X 85858999 85859339 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099764.1 MGP_C3HHeJ_G0037958.1 mouse_genomes_project X 53872755 53872862 + Gm25023 snRNA snRNA MGP_C3HHeJ_T0095432.1 MGP_C3HHeJ_G0035311.1 mouse_genomes_project X 31980677 32019561 + MGP_C3HHeJ_P0095432 Slc25a43 protein_coding protein_coding MGP_C3HHeJ_T0095433.1 MGP_C3HHeJ_G0035311.1 mouse_genomes_project X 31980729 32016681 + Slc25a43 protein_coding processed_transcript MGP_C3HHeJ_T0016266.1 MGP_C3HHeJ_G0014370.1 mouse_genomes_project X 84096766 84097644 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101047.1 MGP_C3HHeJ_G0039241.1 mouse_genomes_project X 124037483 124037606 + Gm23586 snoRNA snoRNA MGP_C3HHeJ_T0095042.1 MGP_C3HHeJ_G0035200.1 mouse_genomes_project X 2318655 2328443 - Magix protein_coding processed_transcript MGP_C3HHeJ_T0095043.1 MGP_C3HHeJ_G0035200.1 mouse_genomes_project X 2320117 2328281 - MGP_C3HHeJ_P0095043 Magix protein_coding protein_coding MGP_C3HHeJ_T0009320.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100602955 100616204 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0009321.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100602974 100604018 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0009322.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100603167 100612890 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0009323.1 MGP_C3HHeJ_G0007475.1 mouse_genomes_project X 100603192 100612611 + Jpx lincRNA lincRNA MGP_C3HHeJ_T0016179.1 MGP_C3HHeJ_G0014283.1 mouse_genomes_project X 63696055 63696970 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095715.1 MGP_C3HHeJ_G0035410.1 mouse_genomes_project X 52419763 52432321 - MGP_C3HHeJ_P0095715 Mmgt1 protein_coding protein_coding MGP_C3HHeJ_T0016105.1 MGP_C3HHeJ_G0014209.1 mouse_genomes_project X 45973476 45973859 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016131.1 MGP_C3HHeJ_G0014235.1 mouse_genomes_project X 53620544 53622553 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095666.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 46824631 47130468 - MGP_C3HHeJ_P0095666 Hs6st2 protein_coding protein_coding MGP_C3HHeJ_T0095667.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 46824631 47130621 - MGP_C3HHeJ_P0095667 Hs6st2 protein_coding protein_coding MGP_C3HHeJ_T0095668.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 47125547 47130113 - Hs6st2 protein_coding retained_intron MGP_C3HHeJ_T0095669.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 47128756 47129330 - Hs6st2 protein_coding processed_transcript MGP_C3HHeJ_T0095670.1 MGP_C3HHeJ_G0035385.1 mouse_genomes_project X 47128942 47129851 - Hs6st2 protein_coding processed_transcript MGP_C3HHeJ_T0096222.1 MGP_C3HHeJ_G0035523.1 mouse_genomes_project X 71129918 71158808 - MGP_C3HHeJ_P0096222 protein_coding protein_coding MGP_C3HHeJ_T0094997.1 MGP_C3HHeJ_G0035190.1 mouse_genomes_project X 1688173 1711166 + MGP_C3HHeJ_P0094997 Akap4 protein_coding protein_coding MGP_C3HHeJ_T0094998.1 MGP_C3HHeJ_G0035190.1 mouse_genomes_project X 1688174 1711161 + MGP_C3HHeJ_P0094998 Akap4 protein_coding protein_coding MGP_C3HHeJ_T0094999.1 MGP_C3HHeJ_G0035190.1 mouse_genomes_project X 1688867 1711148 + MGP_C3HHeJ_P0094999 Akap4 protein_coding protein_coding MGP_C3HHeJ_T0016665.1 MGP_C3HHeJ_G0014769.1 mouse_genomes_project X 160962380 160962834 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096298.1 MGP_C3HHeJ_G0035550.1 mouse_genomes_project X 74163050 74178544 - MGP_C3HHeJ_P0096298 Pbsn protein_coding protein_coding MGP_C3HHeJ_T0096299.1 MGP_C3HHeJ_G0035550.1 mouse_genomes_project X 74163051 74178451 - MGP_C3HHeJ_P0096299 Pbsn protein_coding protein_coding MGP_C3HHeJ_T0097401.1 MGP_C3HHeJ_G0035865.1 mouse_genomes_project X 151033671 151036619 + MGP_C3HHeJ_P0097401 Usp51 protein_coding protein_coding MGP_C3HHeJ_T0096571.1 MGP_C3HHeJ_G0035630.1 mouse_genomes_project X 98160345 98166911 + MGP_C3HHeJ_P0096571 Foxo4 protein_coding protein_coding MGP_C3HHeJ_T0096572.1 MGP_C3HHeJ_G0035630.1 mouse_genomes_project X 98160384 98162253 + Foxo4 protein_coding processed_transcript MGP_C3HHeJ_T0096573.1 MGP_C3HHeJ_G0035630.1 mouse_genomes_project X 98160638 98165051 + MGP_C3HHeJ_P0096573 Foxo4 protein_coding protein_coding MGP_C3HHeJ_T0016668.1 MGP_C3HHeJ_G0014772.1 mouse_genomes_project X 161171250 161218805 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005546.1 MGP_C3HHeJ_G0004663.1 mouse_genomes_project X 167553692 167625434 - Gm15261 antisense antisense MGP_C3HHeJ_T0095311.1 MGP_C3HHeJ_G0035275.1 mouse_genomes_project X 15133465 15171670 + MGP_C3HHeJ_P0095311 Chst7 protein_coding protein_coding MGP_C3HHeJ_T0102356.1 MGP_C3HHeJ_G0040319.1 mouse_genomes_project X 82731307 82732340 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097025.1 MGP_C3HHeJ_G0035772.1 mouse_genomes_project X 133420361 133433557 - MGP_C3HHeJ_P0097025 Nxf3 protein_coding protein_coding MGP_C3HHeJ_T0097026.1 MGP_C3HHeJ_G0035772.1 mouse_genomes_project X 133427873 133433544 - MGP_C3HHeJ_P0097026 Nxf3 protein_coding protein_coding MGP_C3HHeJ_T0101053.1 MGP_C3HHeJ_G0039247.1 mouse_genomes_project X 132672109 132672223 - Gm25868 snoRNA snoRNA MGP_C3HHeJ_T0015989.1 MGP_C3HHeJ_G0014093.1 mouse_genomes_project X 5586444 5586877 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011110.1 MGP_C3HHeJ_G0009243.1 mouse_genomes_project X 102592286 102592384 - Mir325 miRNA miRNA MGP_C3HHeJ_T0016156.1 MGP_C3HHeJ_G0014260.1 mouse_genomes_project X 57745329 57746117 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011128.1 MGP_C3HHeJ_G0009261.1 mouse_genomes_project X 144783228 144783326 + Mir1298 miRNA miRNA MGP_C3HHeJ_T0016548.1 MGP_C3HHeJ_G0014652.1 mouse_genomes_project X 138399737 138400323 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016245.1 MGP_C3HHeJ_G0014349.1 mouse_genomes_project X 76688779 76689464 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099772.1 MGP_C3HHeJ_G0037966.1 mouse_genomes_project X 71303085 71303192 - Gm25629 snRNA snRNA MGP_C3HHeJ_T0096219.1 MGP_C3HHeJ_G0035520.1 mouse_genomes_project X 70760368 70761628 - MGP_C3HHeJ_P0096219 protein_coding protein_coding MGP_C3HHeJ_T0015997.1 MGP_C3HHeJ_G0014101.1 mouse_genomes_project X 7096867 7097217 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097581.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162335869 162361357 + MGP_C3HHeJ_P0097581 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0097582.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162335994 162361050 + MGP_C3HHeJ_P0097582 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0097583.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162335997 162357237 + MGP_C3HHeJ_P0097583 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0097584.1 MGP_C3HHeJ_G0035916.1 mouse_genomes_project X 162338253 162361047 + MGP_C3HHeJ_P0097584 Ap1s2 protein_coding protein_coding MGP_C3HHeJ_T0095782.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56134953 56516756 - MGP_C3HHeJ_P0095782 Atp11c protein_coding protein_coding MGP_C3HHeJ_T0095783.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56134956 56321347 - MGP_C3HHeJ_P0095783 Atp11c protein_coding protein_coding MGP_C3HHeJ_T0095784.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56134956 56321347 - MGP_C3HHeJ_P0095784 Atp11c protein_coding protein_coding MGP_C3HHeJ_T0095785.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56137286 56179111 - Atp11c protein_coding processed_transcript MGP_C3HHeJ_T0095786.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56141589 56321197 - MGP_C3HHeJ_P0095786 Atp11c protein_coding unknown_likely_coding MGP_C3HHeJ_T0095787.1 MGP_C3HHeJ_G0035428.1 mouse_genomes_project X 56147126 56516756 - Atp11c protein_coding processed_transcript MGP_C3HHeJ_T0099774.1 MGP_C3HHeJ_G0037968.1 mouse_genomes_project X 73893143 73893316 + Gm23121 snRNA snRNA MGP_C3HHeJ_T0097086.1 MGP_C3HHeJ_G0035795.1 mouse_genomes_project X 136595603 136601564 - MGP_C3HHeJ_P0097086 Serpina7 protein_coding protein_coding MGP_C3HHeJ_T0097087.1 MGP_C3HHeJ_G0035795.1 mouse_genomes_project X 136595603 136601562 - MGP_C3HHeJ_P0097087 Serpina7 protein_coding protein_coding MGP_C3HHeJ_T0097088.1 MGP_C3HHeJ_G0035795.1 mouse_genomes_project X 136599832 136601583 - MGP_C3HHeJ_P0097088 Serpina7 protein_coding protein_coding MGP_C3HHeJ_T0097398.1 MGP_C3HHeJ_G0035864.1 mouse_genomes_project X 150796589 150814752 + Gpr143 protein_coding processed_transcript MGP_C3HHeJ_T0097399.1 MGP_C3HHeJ_G0035864.1 mouse_genomes_project X 150796654 150827012 + MGP_C3HHeJ_P0097399 Gpr143 protein_coding protein_coding MGP_C3HHeJ_T0097400.1 MGP_C3HHeJ_G0035864.1 mouse_genomes_project X 150796686 150810131 + Gpr143 protein_coding retained_intron MGP_C3HHeJ_T0097593.1 MGP_C3HHeJ_G0035918.1 mouse_genomes_project X 162404424 162457389 - MGP_C3HHeJ_P0097593 Car5b protein_coding protein_coding MGP_C3HHeJ_T0097594.1 MGP_C3HHeJ_G0035918.1 mouse_genomes_project X 162441637 162457373 - Car5b protein_coding retained_intron MGP_C3HHeJ_T0015977.1 MGP_C3HHeJ_G0014081.1 mouse_genomes_project X 2736796 2737065 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099754.1 MGP_C3HHeJ_G0037948.1 mouse_genomes_project X 31642635 31642733 - Gm22364 snRNA snRNA MGP_C3HHeJ_T0016500.1 MGP_C3HHeJ_G0014604.1 mouse_genomes_project X 130650737 130651473 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095323.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15507080 15621945 + MGP_C3HHeJ_P0095323 Jade3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095324.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15507955 15621939 + MGP_C3HHeJ_P0095324 Jade3 protein_coding protein_coding MGP_C3HHeJ_T0095325.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15508055 15594877 + Jade3 protein_coding retained_intron MGP_C3HHeJ_T0095326.1 MGP_C3HHeJ_G0035278.1 mouse_genomes_project X 15544645 15619896 + MGP_C3HHeJ_P0095326 Jade3 protein_coding protein_coding MGP_C3HHeJ_T0096387.1 MGP_C3HHeJ_G0035584.1 mouse_genomes_project X 90496568 90568788 - MGP_C3HHeJ_P0096387 Pdk3 protein_coding protein_coding MGP_C3HHeJ_T0096388.1 MGP_C3HHeJ_G0035584.1 mouse_genomes_project X 90497057 90501086 - Pdk3 protein_coding processed_transcript MGP_C3HHeJ_T0096389.1 MGP_C3HHeJ_G0035584.1 mouse_genomes_project X 90513394 90520850 - Pdk3 protein_coding processed_transcript MGP_C3HHeJ_T0095706.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273467 52328629 + Ddx26b protein_coding processed_transcript MGP_C3HHeJ_T0095707.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273487 52328628 + MGP_C3HHeJ_P0095707 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095708.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273490 52316111 + MGP_C3HHeJ_P0095708 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095709.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273495 52328632 + MGP_C3HHeJ_P0095709 Ddx26b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095710.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52273495 52328629 + MGP_C3HHeJ_P0095710 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095711.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52304225 52328627 + MGP_C3HHeJ_P0095711 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0095712.1 MGP_C3HHeJ_G0035407.1 mouse_genomes_project X 52325863 52328474 + MGP_C3HHeJ_P0095712 Ddx26b protein_coding protein_coding MGP_C3HHeJ_T0096424.1 MGP_C3HHeJ_G0035592.1 mouse_genomes_project X 91416495 91418986 + MGP_C3HHeJ_P0096424 Gspt2 protein_coding protein_coding MGP_C3HHeJ_T0096425.1 MGP_C3HHeJ_G0035592.1 mouse_genomes_project X 91416502 91423677 + MGP_C3HHeJ_P0096425 Gspt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095012.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2225741 2242319 + MGP_C3HHeJ_P0095012 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0095013.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2225758 2242310 + MGP_C3HHeJ_P0095013 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0095014.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2226548 2242310 + MGP_C3HHeJ_P0095014 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0095015.1 MGP_C3HHeJ_G0035194.1 mouse_genomes_project X 2232297 2242319 + MGP_C3HHeJ_P0095015 Foxp3 protein_coding protein_coding MGP_C3HHeJ_T0009297.1 MGP_C3HHeJ_G0007457.1 mouse_genomes_project X 52124881 52127948 + 1600025M17Rik lincRNA lincRNA MGP_C3HHeJ_T0009298.1 MGP_C3HHeJ_G0007457.1 mouse_genomes_project X 52124939 52126808 + 1600025M17Rik lincRNA lincRNA MGP_C3HHeJ_T0096380.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90035619 90365721 - MGP_C3HHeJ_P0096380 Pola1 protein_coding protein_coding MGP_C3HHeJ_T0096381.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90213460 90223918 - Pola1 protein_coding processed_transcript MGP_C3HHeJ_T0096382.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90356637 90365709 - Pola1 protein_coding retained_intron MGP_C3HHeJ_T0096383.1 MGP_C3HHeJ_G0035582.1 mouse_genomes_project X 90356859 90365681 - Pola1 protein_coding processed_transcript MGP_C3HHeJ_T0016137.1 MGP_C3HHeJ_G0014241.1 mouse_genomes_project X 54513308 54514197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095569.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43233708 43313816 - MGP_C3HHeJ_P0095569 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095570.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43233710 43313816 - MGP_C3HHeJ_P0095570 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095571.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43233973 43313849 - MGP_C3HHeJ_P0095571 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095572.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43265190 43313693 - MGP_C3HHeJ_P0095572 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095573.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43291227 43313729 - MGP_C3HHeJ_P0095573 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095574.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43308472 43314238 - MGP_C3HHeJ_P0095574 Smarca1 protein_coding protein_coding MGP_C3HHeJ_T0095575.1 MGP_C3HHeJ_G0035357.1 mouse_genomes_project X 43311126 43314271 - Smarca1 protein_coding processed_transcript MGP_C3HHeJ_T0016615.1 MGP_C3HHeJ_G0014719.1 mouse_genomes_project X 151483302 151484283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095328.1 MGP_C3HHeJ_G0035280.1 mouse_genomes_project X 15719330 15721626 - MGP_C3HHeJ_P0095328 Ndufb11 protein_coding protein_coding MGP_C3HHeJ_T0101297.1 MGP_C3HHeJ_G0039392.1 mouse_genomes_project X 18522366 18522924 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0005495.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2732682 2762950 + Gm14820 antisense antisense MGP_C3HHeJ_T0005496.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2739757 2750534 + Gm14820 antisense antisense MGP_C3HHeJ_T0005497.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2739833 2763668 + Gm14820 antisense antisense MGP_C3HHeJ_T0005498.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2739913 2765328 + Gm14820 antisense antisense MGP_C3HHeJ_T0005499.1 MGP_C3HHeJ_G0004626.1 mouse_genomes_project X 2742190 2763665 + Gm14820 antisense antisense MGP_C3HHeJ_T0099781.1 MGP_C3HHeJ_G0037975.1 mouse_genomes_project X 98148553 98148687 + Gm22472 snRNA snRNA MGP_C3HHeJ_T0095650.1 MGP_C3HHeJ_G0035379.1 mouse_genomes_project X 45416124 45417054 - MGP_C3HHeJ_P0095650 Olfr1323 protein_coding protein_coding MGP_C3HHeJ_T0097705.1 MGP_C3HHeJ_G0035950.1 mouse_genomes_project X 168323395 168327953 - MGP_C3HHeJ_P0097705 4933400A11Rik protein_coding protein_coding MGP_C3HHeJ_T0097706.1 MGP_C3HHeJ_G0035950.1 mouse_genomes_project X 168323516 168327996 - MGP_C3HHeJ_P0097706 4933400A11Rik protein_coding protein_coding MGP_C3HHeJ_T0097707.1 MGP_C3HHeJ_G0035950.1 mouse_genomes_project X 168323563 168327918 - MGP_C3HHeJ_P0097707 4933400A11Rik protein_coding protein_coding MGP_C3HHeJ_T0016249.1 MGP_C3HHeJ_G0014353.1 mouse_genomes_project X 77566570 77567300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016396.1 MGP_C3HHeJ_G0014500.1 mouse_genomes_project X 103913742 103914249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095995.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148046 70150373 + MGP_C3HHeJ_P0095995 Avpr2 protein_coding protein_coding MGP_C3HHeJ_T0095996.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148047 70149366 + Avpr2 protein_coding processed_transcript MGP_C3HHeJ_T0095997.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148054 70151447 + MGP_C3HHeJ_P0095997 Avpr2 protein_coding protein_coding MGP_C3HHeJ_T0095998.1 MGP_C3HHeJ_G0035496.1 mouse_genomes_project X 70148058 70150142 + MGP_C3HHeJ_P0095998 Avpr2 protein_coding protein_coding MGP_C3HHeJ_T0098228.1 MGP_C3HHeJ_G0036440.1 mouse_genomes_project X 133646274 133646393 + n-R5s12 rRNA rRNA MGP_C3HHeJ_T0018441.1 MGP_C3HHeJ_G0015549.1 mouse_genomes_project X 132310800 132325536 - 3632454L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018442.1 MGP_C3HHeJ_G0015549.1 mouse_genomes_project X 132311599 132336936 - 3632454L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018443.1 MGP_C3HHeJ_G0015549.1 mouse_genomes_project X 132315975 132325990 - 3632454L22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016389.1 MGP_C3HHeJ_G0014493.1 mouse_genomes_project X 102904257 102904449 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097335.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149764354 149765852 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097336.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149764471 149768100 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097337.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149764902 149770449 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097338.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766831 149837638 + MGP_C3HHeJ_P0097338 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097339.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766849 149770449 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097340.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766915 149817891 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097341.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766915 149900018 + MGP_C3HHeJ_P0097341 Huwe1 protein_coding protein_coding MGP_C3HHeJ_T0097342.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766925 149900020 + MGP_C3HHeJ_P0097342 Huwe1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097343.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766935 149825229 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097344.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149766935 149838153 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097345.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767246 149799966 + MGP_C3HHeJ_P0097345 Huwe1 protein_coding protein_coding MGP_C3HHeJ_T0097346.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767250 149812279 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097347.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767250 149836823 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097348.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149767250 149804798 + MGP_C3HHeJ_P0097348 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097349.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149799937 149900018 + MGP_C3HHeJ_P0097349 Huwe1 protein_coding protein_coding MGP_C3HHeJ_T0097350.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149824849 149855756 + MGP_C3HHeJ_P0097350 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097351.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149829177 149838507 + MGP_C3HHeJ_P0097351 Huwe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097352.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149847190 149847905 + Huwe1 protein_coding processed_transcript MGP_C3HHeJ_T0097353.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149869529 149874453 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097354.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149873380 149874925 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097355.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149873380 149874728 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097356.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149885809 149887140 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097357.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149885870 149888261 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097358.1 MGP_C3HHeJ_G0035854.1 mouse_genomes_project X 149888785 149892360 + Huwe1 protein_coding retained_intron MGP_C3HHeJ_T0097106.1 MGP_C3HHeJ_G0035802.1 mouse_genomes_project X 137219836 137295835 + MGP_C3HHeJ_P0097106 Tbc1d8b protein_coding protein_coding MGP_C3HHeJ_T0097108.1 MGP_C3HHeJ_G0035802.1 mouse_genomes_project X 137278591 137287663 + Tbc1d8b protein_coding processed_transcript MGP_C3HHeJ_T0016284.1 MGP_C3HHeJ_G0014388.1 mouse_genomes_project X 86298169 86301595 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016690.1 MGP_C3HHeJ_G0014794.1 mouse_genomes_project X 166498334 166499054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097040.1 MGP_C3HHeJ_G0035779.1 mouse_genomes_project X 133807861 133942767 + MGP_C3HHeJ_P0097040 Kir3dl1 protein_coding protein_coding MGP_C3HHeJ_T0098306.1 MGP_C3HHeJ_G0036518.1 mouse_genomes_project X 112548130 112548511 + Gm27414 scaRNA scaRNA MGP_C3HHeJ_T0096304.1 MGP_C3HHeJ_G0035554.1 mouse_genomes_project X 74505917 74511405 + MGP_C3HHeJ_P0096304 protein_coding protein_coding MGP_C3HHeJ_T0016101.1 MGP_C3HHeJ_G0014205.1 mouse_genomes_project X 44623784 44624184 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016240.1 MGP_C3HHeJ_G0014344.1 mouse_genomes_project X 75152886 75155993 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016085.1 MGP_C3HHeJ_G0014189.1 mouse_genomes_project X 39844983 39845378 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016688.1 MGP_C3HHeJ_G0014792.1 mouse_genomes_project X 165921253 165921796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101050.1 MGP_C3HHeJ_G0039244.1 mouse_genomes_project X 129706217 129706341 + Gm26406 snoRNA snoRNA MGP_C3HHeJ_T0009335.1 MGP_C3HHeJ_G0007479.1 mouse_genomes_project X 110156444 110196875 - Gm14936 lincRNA lincRNA MGP_C3HHeJ_T0095396.1 MGP_C3HHeJ_G0035297.1 mouse_genomes_project X 16855847 16883815 + MGP_C3HHeJ_P0095396 Slc6a14 protein_coding protein_coding MGP_C3HHeJ_T0011111.1 MGP_C3HHeJ_G0009244.1 mouse_genomes_project X 103696154 103696264 + Gm27428 miRNA miRNA MGP_C3HHeJ_T0095201.1 MGP_C3HHeJ_G0035235.1 mouse_genomes_project X 3578540 3586007 + MGP_C3HHeJ_P0095201 protein_coding protein_coding MGP_C3HHeJ_T0009303.1 MGP_C3HHeJ_G0007461.1 mouse_genomes_project X 64682524 64693402 - Fmr1os lincRNA lincRNA MGP_C3HHeJ_T0016023.1 MGP_C3HHeJ_G0014127.1 mouse_genomes_project X 13374273 13374430 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016147.1 MGP_C3HHeJ_G0014251.1 mouse_genomes_project X 56650351 56652218 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097226.1 MGP_C3HHeJ_G0035835.1 mouse_genomes_project X 142033318 142366487 - MGP_C3HHeJ_P0097226 Trpc5 protein_coding protein_coding MGP_C3HHeJ_T0097227.1 MGP_C3HHeJ_G0035835.1 mouse_genomes_project X 142070763 142366310 - Trpc5 protein_coding retained_intron MGP_C3HHeJ_T0016386.1 MGP_C3HHeJ_G0014490.1 mouse_genomes_project X 102533914 102534651 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097081.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419453 136517236 + MGP_C3HHeJ_P0097081 Nrk protein_coding protein_coding MGP_C3HHeJ_T0097082.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419454 136472468 + Nrk protein_coding processed_transcript MGP_C3HHeJ_T0097083.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419454 136518676 + MGP_C3HHeJ_P0097083 Nrk protein_coding protein_coding MGP_C3HHeJ_T0097084.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136419454 136517948 + MGP_C3HHeJ_P0097084 Nrk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097085.1 MGP_C3HHeJ_G0035794.1 mouse_genomes_project X 136490839 136497900 + Nrk protein_coding retained_intron MGP_C3HHeJ_T0016012.1 MGP_C3HHeJ_G0014116.1 mouse_genomes_project X 10403626 10403938 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101530.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100265480 100342931 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101531.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100315413 100342931 - unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101532.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100315413 100412434 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101533.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100315479 100339265 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101534.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100316767 100342923 - unitary_pseudogene retained_intron MGP_C3HHeJ_T0101535.1 MGP_C3HHeJ_G0039501.1 mouse_genomes_project X 100318318 100376983 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0097090.1 MGP_C3HHeJ_G0035797.1 mouse_genomes_project X 136681473 136683255 + MGP_C3HHeJ_P0097090 4933428M09Rik protein_coding protein_coding MGP_C3HHeJ_T0016332.1 MGP_C3HHeJ_G0014436.1 mouse_genomes_project X 94032408 94033684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095387.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16199629 16209685 - MGP_C3HHeJ_P0095387 Zfp300 protein_coding protein_coding MGP_C3HHeJ_T0095388.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16202041 16209704 - MGP_C3HHeJ_P0095388 Zfp300 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095389.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16204397 16209442 - Zfp300 protein_coding retained_intron MGP_C3HHeJ_T0095390.1 MGP_C3HHeJ_G0035293.1 mouse_genomes_project X 16204705 16209983 - Zfp300 protein_coding processed_transcript MGP_C3HHeJ_T0097186.1 MGP_C3HHeJ_G0035828.1 mouse_genomes_project X 140478971 140593086 - MGP_C3HHeJ_P0097186 Ammecr1 protein_coding protein_coding MGP_C3HHeJ_T0095466.1 MGP_C3HHeJ_G0035326.1 mouse_genomes_project X 33043919 33047954 + MGP_C3HHeJ_P0095466 Rhox5 protein_coding protein_coding MGP_C3HHeJ_T0095467.1 MGP_C3HHeJ_G0035326.1 mouse_genomes_project X 33043928 33047842 + MGP_C3HHeJ_P0095467 Rhox5 protein_coding protein_coding MGP_C3HHeJ_T0016576.1 MGP_C3HHeJ_G0014680.1 mouse_genomes_project X 141967166 141967496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096888.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884092 127325276 + Diaph2 protein_coding retained_intron MGP_C3HHeJ_T0096889.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884092 127615217 + MGP_C3HHeJ_P0096889 Diaph2 protein_coding protein_coding MGP_C3HHeJ_T0096890.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884146 127477513 + Diaph2 protein_coding retained_intron MGP_C3HHeJ_T0096891.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884155 127610542 + MGP_C3HHeJ_P0096891 Diaph2 protein_coding protein_coding MGP_C3HHeJ_T0096892.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884174 127477186 + Diaph2 protein_coding retained_intron MGP_C3HHeJ_T0096893.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 126884261 127615220 + MGP_C3HHeJ_P0096893 Diaph2 protein_coding protein_coding MGP_C3HHeJ_T0096894.1 MGP_C3HHeJ_G0035731.1 mouse_genomes_project X 127107826 127171732 + Diaph2 protein_coding processed_transcript MGP_C3HHeJ_T0016335.1 MGP_C3HHeJ_G0014439.1 mouse_genomes_project X 95342662 95343150 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095796.1 MGP_C3HHeJ_G0035436.1 mouse_genomes_project X 60288038 60288834 - MGP_C3HHeJ_P0095796 Gm6760 protein_coding protein_coding MGP_C3HHeJ_T0095272.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8483999 8762398 - MGP_C3HHeJ_P0095272 Cask protein_coding unknown_likely_coding MGP_C3HHeJ_T0095273.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8484003 8814951 - MGP_C3HHeJ_P0095273 Cask protein_coding protein_coding MGP_C3HHeJ_T0095274.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8484003 8814988 - MGP_C3HHeJ_P0095274 Cask protein_coding protein_coding MGP_C3HHeJ_T0095275.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8484003 8752282 - MGP_C3HHeJ_P0095275 Cask protein_coding protein_coding MGP_C3HHeJ_T0095276.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8488347 8814966 - MGP_C3HHeJ_P0095276 Cask protein_coding protein_coding MGP_C3HHeJ_T0095277.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8488798 8493786 - MGP_C3HHeJ_P0095277 Cask protein_coding protein_coding MGP_C3HHeJ_T0095278.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8489096 8504676 - MGP_C3HHeJ_P0095278 Cask protein_coding protein_coding MGP_C3HHeJ_T0095279.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8500346 8525872 - MGP_C3HHeJ_P0095279 Cask protein_coding protein_coding MGP_C3HHeJ_T0095280.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8521108 8814988 - Cask protein_coding retained_intron MGP_C3HHeJ_T0095281.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8537644 8641346 - MGP_C3HHeJ_P0095281 Cask protein_coding protein_coding MGP_C3HHeJ_T0095282.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8594586 8814498 - MGP_C3HHeJ_P0095282 Cask protein_coding protein_coding MGP_C3HHeJ_T0095286.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8681053 8819777 - Cask protein_coding processed_transcript MGP_C3HHeJ_T0095287.1 MGP_C3HHeJ_G0035260.1 mouse_genomes_project X 8814499 8815145 - Cask protein_coding processed_transcript MGP_C3HHeJ_T0016262.1 MGP_C3HHeJ_G0014366.1 mouse_genomes_project X 82173878 82174307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096162.1 MGP_C3HHeJ_G0035512.1 mouse_genomes_project X 70587325 70595286 + MGP_C3HHeJ_P0096162 Fam50a protein_coding protein_coding MGP_C3HHeJ_T0096163.1 MGP_C3HHeJ_G0035512.1 mouse_genomes_project X 70587418 70595271 + Fam50a protein_coding retained_intron MGP_C3HHeJ_T0096164.1 MGP_C3HHeJ_G0035512.1 mouse_genomes_project X 70591532 70592030 + Fam50a protein_coding retained_intron MGP_C3HHeJ_T0097113.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137369318 137420396 - MGP_C3HHeJ_P0097113 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097114.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137369590 137420419 - MGP_C3HHeJ_P0097114 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097115.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137370361 137406633 - MGP_C3HHeJ_P0097115 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097116.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137371917 137383790 - Morc4 protein_coding retained_intron MGP_C3HHeJ_T0097117.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137384165 137403690 - MGP_C3HHeJ_P0097117 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0097118.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137405090 137420367 - Morc4 protein_coding retained_intron MGP_C3HHeJ_T0097119.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137405097 137420364 - Morc4 protein_coding processed_transcript MGP_C3HHeJ_T0097120.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137407504 137420152 - Morc4 protein_coding retained_intron MGP_C3HHeJ_T0097121.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137407538 137420115 - MGP_C3HHeJ_P0097121 Morc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097122.1 MGP_C3HHeJ_G0035806.1 mouse_genomes_project X 137407652 137419941 - MGP_C3HHeJ_P0097122 Morc4 protein_coding protein_coding MGP_C3HHeJ_T0102353.1 MGP_C3HHeJ_G0040316.1 mouse_genomes_project X 74190219 74194709 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016559.1 MGP_C3HHeJ_G0014663.1 mouse_genomes_project X 139481261 139481517 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018444.1 MGP_C3HHeJ_G0015550.1 mouse_genomes_project X 133454907 133465721 + 5730412P04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0095293.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11699954 11811184 - MGP_C3HHeJ_P0095293 Maob protein_coding protein_coding MGP_C3HHeJ_T0095294.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11700711 11811093 - MGP_C3HHeJ_P0095294 Maob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095295.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11714258 11811093 - MGP_C3HHeJ_P0095295 Maob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095296.1 MGP_C3HHeJ_G0035267.1 mouse_genomes_project X 11736342 11811138 - MGP_C3HHeJ_P0095296 Maob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096188.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664418 70672974 - MGP_C3HHeJ_P0096188 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096189.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664460 70672805 - MGP_C3HHeJ_P0096189 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096190.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664460 70672705 - MGP_C3HHeJ_P0096190 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096191.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70664903 70672884 - MGP_C3HHeJ_P0096191 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096192.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70665001 70672805 - MGP_C3HHeJ_P0096192 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096193.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666121 70672957 - MGP_C3HHeJ_P0096193 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096194.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666331 70672805 - MGP_C3HHeJ_P0096194 Fam3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096195.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666555 70667455 - Fam3a protein_coding retained_intron MGP_C3HHeJ_T0096196.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666611 70672389 - MGP_C3HHeJ_P0096196 Fam3a protein_coding protein_coding MGP_C3HHeJ_T0096197.1 MGP_C3HHeJ_G0035517.1 mouse_genomes_project X 70666611 70672452 - MGP_C3HHeJ_P0096197 Fam3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011060.1 MGP_C3HHeJ_G0009193.1 mouse_genomes_project X 48548667 48548762 - Mir322 miRNA miRNA MGP_C3HHeJ_T0016055.1 MGP_C3HHeJ_G0014159.1 mouse_genomes_project X 32287427 32290124 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016351.1 MGP_C3HHeJ_G0014455.1 mouse_genomes_project X 99139589 99140063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095375.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16062258 16082528 - Uxt protein_coding processed_transcript MGP_C3HHeJ_T0095376.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16072198 16082554 - MGP_C3HHeJ_P0095376 Uxt protein_coding protein_coding MGP_C3HHeJ_T0095377.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16072459 16082452 - Uxt protein_coding retained_intron MGP_C3HHeJ_T0095378.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16072465 16082537 - Uxt protein_coding processed_transcript MGP_C3HHeJ_T0095379.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16079598 16082523 - Uxt protein_coding retained_intron MGP_C3HHeJ_T0095380.1 MGP_C3HHeJ_G0035290.1 mouse_genomes_project X 16081953 16082511 - Uxt protein_coding processed_transcript MGP_C3HHeJ_T0016034.1 MGP_C3HHeJ_G0014138.1 mouse_genomes_project X 15543608 15543804 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099766.1 MGP_C3HHeJ_G0037960.1 mouse_genomes_project X 55087573 55087667 + Gm26487 snRNA snRNA MGP_C3HHeJ_T0096447.1 MGP_C3HHeJ_G0035598.1 mouse_genomes_project X 92575198 92770323 + Zc3h12b protein_coding processed_transcript MGP_C3HHeJ_T0096448.1 MGP_C3HHeJ_G0035598.1 mouse_genomes_project X 92742273 92773535 + MGP_C3HHeJ_P0096448 Zc3h12b protein_coding protein_coding MGP_C3HHeJ_T0096449.1 MGP_C3HHeJ_G0035598.1 mouse_genomes_project X 92743084 92778202 + MGP_C3HHeJ_P0096449 Zc3h12b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096957.1 MGP_C3HHeJ_G0035748.1 mouse_genomes_project X 131852635 131865594 - MGP_C3HHeJ_P0096957 Gla protein_coding protein_coding MGP_C3HHeJ_T0096958.1 MGP_C3HHeJ_G0035748.1 mouse_genomes_project X 131859758 131864761 - MGP_C3HHeJ_P0096958 Gla protein_coding protein_coding MGP_C3HHeJ_T0016449.1 MGP_C3HHeJ_G0014553.1 mouse_genomes_project X 114558965 114560058 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095127.1 MGP_C3HHeJ_G0035216.1 mouse_genomes_project X 2599642 2604082 - MGP_C3HHeJ_P0095127 Eras protein_coding protein_coding MGP_C3HHeJ_T0096992.1 MGP_C3HHeJ_G0035759.1 mouse_genomes_project X 132495062 133559882 - MGP_C3HHeJ_P0096992 Tceal5 protein_coding protein_coding MGP_C3HHeJ_T0096993.1 MGP_C3HHeJ_G0035759.1 mouse_genomes_project X 132495094 133559977 - MGP_C3HHeJ_P0096993 Tceal5 protein_coding protein_coding MGP_C3HHeJ_T0097032.1 MGP_C3HHeJ_G0035759.1 mouse_genomes_project X 133555287 133560121 - MGP_C3HHeJ_P0097032 Tceal5 protein_coding protein_coding MGP_C3HHeJ_T0016599.1 MGP_C3HHeJ_G0014703.1 mouse_genomes_project X 148396291 148398722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002446.1 MGP_C3HHeJ_G0002364.1 mouse_genomes_project X 132022527 132023953 - TEC TEC MGP_C3HHeJ_T0097091.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712577 136737642 + MGP_C3HHeJ_P0097091 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097092.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712577 136741000 + MGP_C3HHeJ_P0097092 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097093.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712579 136741002 + MGP_C3HHeJ_P0097093 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097094.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136712643 136715821 + Mum1l1 protein_coding retained_intron MGP_C3HHeJ_T0097095.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136741002 + MGP_C3HHeJ_P0097095 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097096.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136741002 + MGP_C3HHeJ_P0097096 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097097.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136737469 + MGP_C3HHeJ_P0097097 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0097098.1 MGP_C3HHeJ_G0035798.1 mouse_genomes_project X 136719702 136737708 + MGP_C3HHeJ_P0097098 Mum1l1 protein_coding protein_coding MGP_C3HHeJ_T0011106.1 MGP_C3HHeJ_G0009239.1 mouse_genomes_project X 100690795 100690844 + Mir374c miRNA miRNA MGP_C3HHeJ_T0016110.1 MGP_C3HHeJ_G0014214.1 mouse_genomes_project X 46653503 46653901 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096403.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000103 91003664 + Klhl15 protein_coding processed_transcript MGP_C3HHeJ_T0096404.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000108 91018506 + MGP_C3HHeJ_P0096404 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096405.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000431 91019829 + MGP_C3HHeJ_P0096405 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096406.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000434 91039384 + MGP_C3HHeJ_P0096406 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096407.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000491 91021734 + MGP_C3HHeJ_P0096407 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096408.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000494 91038613 + Klhl15 protein_coding retained_intron MGP_C3HHeJ_T0096409.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000494 91019833 + MGP_C3HHeJ_P0096409 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096410.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91000815 91039378 + MGP_C3HHeJ_P0096410 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0096411.1 MGP_C3HHeJ_G0035588.1 mouse_genomes_project X 91001317 91043588 + MGP_C3HHeJ_P0096411 Klhl15 protein_coding protein_coding MGP_C3HHeJ_T0016205.1 MGP_C3HHeJ_G0014309.1 mouse_genomes_project X 70772434 70773267 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095565.1 MGP_C3HHeJ_G0035354.1 mouse_genomes_project X 40170367 40173995 - MGP_C3HHeJ_P0095565 Dcaf12l1 protein_coding protein_coding MGP_C3HHeJ_T0095566.1 MGP_C3HHeJ_G0035354.1 mouse_genomes_project X 40170367 40173959 - MGP_C3HHeJ_P0095566 Dcaf12l1 protein_coding protein_coding MGP_C3HHeJ_T0096853.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468058 111019462 + MGP_C3HHeJ_P0096853 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096854.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468070 111015003 + MGP_C3HHeJ_P0096854 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096855.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468124 111018660 + MGP_C3HHeJ_P0096855 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096856.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468800 110928714 + Dach2 protein_coding retained_intron MGP_C3HHeJ_T0096857.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468805 111018969 + MGP_C3HHeJ_P0096857 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096858.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110468805 111017342 + MGP_C3HHeJ_P0096858 Dach2 protein_coding protein_coding MGP_C3HHeJ_T0096859.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110469186 110719672 + Dach2 protein_coding processed_transcript MGP_C3HHeJ_T0096860.1 MGP_C3HHeJ_G0035714.1 mouse_genomes_project X 110893578 111017342 + Dach2 protein_coding processed_transcript MGP_C3HHeJ_T0095202.1 MGP_C3HHeJ_G0035236.1 mouse_genomes_project X 3722701 3725284 + MGP_C3HHeJ_P0095202 B630019K06Rik protein_coding protein_coding MGP_C3HHeJ_T0095834.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66537564 66554924 - MGP_C3HHeJ_P0095834 Tmem185a protein_coding protein_coding MGP_C3HHeJ_T0095835.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66538770 66554924 - MGP_C3HHeJ_P0095835 Tmem185a protein_coding protein_coding MGP_C3HHeJ_T0095836.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66538865 66547923 - Tmem185a protein_coding processed_transcript MGP_C3HHeJ_T0095837.1 MGP_C3HHeJ_G0035452.1 mouse_genomes_project X 66540734 66554886 - Tmem185a protein_coding processed_transcript MGP_C3HHeJ_T0101043.1 MGP_C3HHeJ_G0039237.1 mouse_genomes_project X 113927737 113927852 + Gm24438 snoRNA snoRNA MGP_C3HHeJ_T0016652.1 MGP_C3HHeJ_G0014756.1 mouse_genomes_project X 157696868 157697132 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016680.1 MGP_C3HHeJ_G0014784.1 mouse_genomes_project X 164125170 164125549 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016204.1 MGP_C3HHeJ_G0014308.1 mouse_genomes_project X 70552204 70552420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016315.1 MGP_C3HHeJ_G0014419.1 mouse_genomes_project X 91391754 91392080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096770.1 MGP_C3HHeJ_G0035685.1 mouse_genomes_project X 104108360 104111923 - MGP_C3HHeJ_P0096770 Zcchc5 protein_coding protein_coding MGP_C3HHeJ_T0096971.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132026019 132028880 - MGP_C3HHeJ_P0096971 Armcx6 protein_coding protein_coding MGP_C3HHeJ_T0096972.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132026021 132028966 - MGP_C3HHeJ_P0096972 Armcx6 protein_coding protein_coding MGP_C3HHeJ_T0096973.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132027518 132028896 - Armcx6 protein_coding processed_transcript MGP_C3HHeJ_T0096974.1 MGP_C3HHeJ_G0035752.1 mouse_genomes_project X 132027698 132028910 - Armcx6 protein_coding processed_transcript MGP_C3HHeJ_T0016547.1 MGP_C3HHeJ_G0014651.1 mouse_genomes_project X 138375253 138377792 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016650.1 MGP_C3HHeJ_G0014754.1 mouse_genomes_project X 157373374 157374120 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016343.1 MGP_C3HHeJ_G0014447.1 mouse_genomes_project X 97221838 97222993 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095195.1 MGP_C3HHeJ_G0035229.1 mouse_genomes_project X 3044489 3076330 + MGP_C3HHeJ_P0095195 protein_coding protein_coding MGP_C3HHeJ_T0016467.1 MGP_C3HHeJ_G0014571.1 mouse_genomes_project X 118139979 118141156 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002443.1 MGP_C3HHeJ_G0002361.1 mouse_genomes_project X 100909382 100911394 - TEC TEC MGP_C3HHeJ_T0011680.1 MGP_C3HHeJ_G0009813.1 mouse_genomes_project X 130620123 130620459 - Gm22552 misc_RNA misc_RNA MGP_C3HHeJ_T0096809.1 MGP_C3HHeJ_G0035698.1 mouse_genomes_project X 106390104 106459054 + MGP_C3HHeJ_P0096809 Sh3bgrl protein_coding protein_coding MGP_C3HHeJ_T0096810.1 MGP_C3HHeJ_G0035698.1 mouse_genomes_project X 106390248 106500645 + Sh3bgrl protein_coding processed_transcript MGP_C3HHeJ_T0096811.1 MGP_C3HHeJ_G0035698.1 mouse_genomes_project X 106410574 106450942 + Sh3bgrl protein_coding processed_transcript MGP_C3HHeJ_T0009304.1 MGP_C3HHeJ_G0007462.1 mouse_genomes_project X 69172971 69173493 + Gm14684 lincRNA lincRNA MGP_C3HHeJ_T0097506.1 MGP_C3HHeJ_G0035897.1 mouse_genomes_project X 158309964 158446845 + MGP_C3HHeJ_P0097506 Map3k15 protein_coding protein_coding MGP_C3HHeJ_T0101027.1 MGP_C3HHeJ_G0039221.1 mouse_genomes_project X 70001467 70001590 + Gm25226 snoRNA snoRNA MGP_C3HHeJ_T0097160.1 MGP_C3HHeJ_G0035818.1 mouse_genomes_project X 138746154 139074967 - MGP_C3HHeJ_P0097160 Col4a6 protein_coding protein_coding MGP_C3HHeJ_T0097161.1 MGP_C3HHeJ_G0035818.1 mouse_genomes_project X 138770475 138791880 - Col4a6 protein_coding processed_transcript MGP_C3HHeJ_T0097162.1 MGP_C3HHeJ_G0035818.1 mouse_genomes_project X 138774029 138776914 - Col4a6 protein_coding retained_intron MGP_C3HHeJ_T0016208.1 MGP_C3HHeJ_G0014312.1 mouse_genomes_project X 70796887 70797472 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101044.1 MGP_C3HHeJ_G0039238.1 mouse_genomes_project X 116617857 116617973 - Gm26182 snoRNA snoRNA MGP_C3HHeJ_T0016127.1 MGP_C3HHeJ_G0014231.1 mouse_genomes_project X 51864336 51865059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095474.1 MGP_C3HHeJ_G0035332.1 mouse_genomes_project X 33368788 33377336 - MGP_C3HHeJ_P0095474 Rhox11 protein_coding protein_coding MGP_C3HHeJ_T0018404.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57134221 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018405.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57089341 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018406.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57084677 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018407.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065751 57070534 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018408.1 MGP_C3HHeJ_G0015539.1 mouse_genomes_project X 57065763 57134221 + C230004F18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0097262.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148448711 148515952 - MGP_C3HHeJ_P0097262 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097263.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148449544 148514190 - MGP_C3HHeJ_P0097263 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097268.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148493870 148515952 - MGP_C3HHeJ_P0097268 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097269.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496515 148514193 - Apex2 protein_coding retained_intron MGP_C3HHeJ_T0097270.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496516 148515976 - Apex2 protein_coding processed_transcript MGP_C3HHeJ_T0097271.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496516 148514257 - MGP_C3HHeJ_P0097271 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097272.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148496516 148514204 - MGP_C3HHeJ_P0097272 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097273.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148497467 148512556 - Apex2 protein_coding processed_transcript MGP_C3HHeJ_T0097274.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148497557 148514179 - MGP_C3HHeJ_P0097274 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0097275.1 MGP_C3HHeJ_G0035843.1 mouse_genomes_project X 148510498 148514189 - MGP_C3HHeJ_P0097275 Apex2 protein_coding protein_coding MGP_C3HHeJ_T0016166.1 MGP_C3HHeJ_G0014270.1 mouse_genomes_project X 59417022 59417324 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102376.1 MGP_C3HHeJ_G0040339.1 mouse_genomes_project X 152455993 152459626 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016151.1 MGP_C3HHeJ_G0014255.1 mouse_genomes_project X 57040712 57041865 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095918.1 MGP_C3HHeJ_G0035480.1 mouse_genomes_project X 69661527 69663167 - MGP_C3HHeJ_P0095918 Trex2 protein_coding protein_coding MGP_C3HHeJ_T0016625.1 MGP_C3HHeJ_G0014729.1 mouse_genomes_project X 153369889 153372683 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016482.1 MGP_C3HHeJ_G0014586.1 mouse_genomes_project X 125441394 125442058 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016329.1 MGP_C3HHeJ_G0014433.1 mouse_genomes_project X 93788091 93788626 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016368.1 MGP_C3HHeJ_G0014472.1 mouse_genomes_project X 100643309 100643534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005500.1 MGP_C3HHeJ_G0004627.1 mouse_genomes_project X 2849005 2851541 + Rbm3os antisense antisense MGP_C3HHeJ_T0005501.1 MGP_C3HHeJ_G0004627.1 mouse_genomes_project X 2849493 2851253 + Rbm3os antisense antisense MGP_C3HHeJ_T0011038.1 MGP_C3HHeJ_G0009171.1 mouse_genomes_project X 31613883 31614020 - Gm44485 miRNA miRNA MGP_C3HHeJ_T0016216.1 MGP_C3HHeJ_G0014320.1 mouse_genomes_project X 71808560 71809208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011684.1 MGP_C3HHeJ_G0009817.1 mouse_genomes_project X 137186072 137186396 - Gm24380 misc_RNA misc_RNA MGP_C3HHeJ_T0099816.1 MGP_C3HHeJ_G0038010.1 mouse_genomes_project X 164163426 164163533 - Gm22062 snRNA snRNA MGP_C3HHeJ_T0016239.1 MGP_C3HHeJ_G0014343.1 mouse_genomes_project X 75082407 75083515 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095884.1 MGP_C3HHeJ_G0035462.1 mouse_genomes_project X 68164050 68181433 + MGP_C3HHeJ_P0095884 Fate1 protein_coding protein_coding MGP_C3HHeJ_T0095885.1 MGP_C3HHeJ_G0035462.1 mouse_genomes_project X 68173952 68181433 + MGP_C3HHeJ_P0095885 Fate1 protein_coding protein_coding MGP_C3HHeJ_T0095886.1 MGP_C3HHeJ_G0035462.1 mouse_genomes_project X 68175591 68181155 + Fate1 protein_coding processed_transcript MGP_C3HHeJ_T0095875.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68002965 68014261 + MGP_C3HHeJ_P0095875 Vma21 protein_coding protein_coding MGP_C3HHeJ_T0095876.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68003799 68014261 + MGP_C3HHeJ_P0095876 Vma21 protein_coding protein_coding MGP_C3HHeJ_T0095877.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68003831 68028778 + Vma21 protein_coding processed_transcript MGP_C3HHeJ_T0095878.1 MGP_C3HHeJ_G0035459.1 mouse_genomes_project X 68003831 68014261 + MGP_C3HHeJ_P0095878 Vma21 protein_coding protein_coding MGP_C3HHeJ_T0095808.1 MGP_C3HHeJ_G0035444.1 mouse_genomes_project X 63953932 63955519 - MGP_C3HHeJ_P0095808 4933436I01Rik protein_coding protein_coding MGP_C3HHeJ_T0011665.1 MGP_C3HHeJ_G0009798.1 mouse_genomes_project X 79205127 79205230 - Gm23671 misc_RNA misc_RNA MGP_C3HHeJ_T0016323.1 MGP_C3HHeJ_G0014427.1 mouse_genomes_project X 92155865 92157936 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011668.1 MGP_C3HHeJ_G0009801.1 mouse_genomes_project X 100569956 100570024 - Gm27733 misc_RNA misc_RNA MGP_C3HHeJ_T0095447.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32161966 32241955 - MGP_C3HHeJ_P0095447 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095448.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32164086 32241955 - MGP_C3HHeJ_P0095448 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095449.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32165671 32241955 - MGP_C3HHeJ_P0095449 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095450.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32218899 32244097 - MGP_C3HHeJ_P0095450 Sept6 protein_coding protein_coding MGP_C3HHeJ_T0095451.1 MGP_C3HHeJ_G0035316.1 mouse_genomes_project X 32224205 32241790 - Sept6 protein_coding retained_intron MGP_C3HHeJ_T0016582.1 MGP_C3HHeJ_G0014686.1 mouse_genomes_project X 142949929 142950625 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005516.1 MGP_C3HHeJ_G0004640.1 mouse_genomes_project X 66011371 66223273 - antisense antisense MGP_C3HHeJ_T0016215.1 MGP_C3HHeJ_G0014319.1 mouse_genomes_project X 71598149 71600078 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097480.1 MGP_C3HHeJ_G0035893.1 mouse_genomes_project X 157661128 157665509 + Eif1ax protein_coding retained_intron MGP_C3HHeJ_T0097481.1 MGP_C3HHeJ_G0035893.1 mouse_genomes_project X 157661128 157679811 + MGP_C3HHeJ_P0097481 Eif1ax protein_coding protein_coding MGP_C3HHeJ_T0016059.1 MGP_C3HHeJ_G0014163.1 mouse_genomes_project X 34458779 34459726 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096290.1 MGP_C3HHeJ_G0035545.1 mouse_genomes_project X 72656554 72659983 + MGP_C3HHeJ_P0096290 protein_coding protein_coding MGP_C3HHeJ_T0009292.1 MGP_C3HHeJ_G0007454.1 mouse_genomes_project X 41878617 42199918 - lincRNA lincRNA MGP_C3HHeJ_T0095095.1 MGP_C3HHeJ_G0035207.1 mouse_genomes_project X 2494490 2510432 + MGP_C3HHeJ_P0095095 Kcnd1 protein_coding protein_coding MGP_C3HHeJ_T0095096.1 MGP_C3HHeJ_G0035207.1 mouse_genomes_project X 2494508 2495469 + Kcnd1 protein_coding processed_transcript MGP_C3HHeJ_T0016392.1 MGP_C3HHeJ_G0014496.1 mouse_genomes_project X 103396785 103397398 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016445.1 MGP_C3HHeJ_G0014549.1 mouse_genomes_project X 113378101 113378436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095788.1 MGP_C3HHeJ_G0035429.1 mouse_genomes_project X 56355784 56461554 - MGP_C3HHeJ_P0095788 Gm7073 protein_coding protein_coding MGP_C3HHeJ_T0011067.1 MGP_C3HHeJ_G0009200.1 mouse_genomes_project X 62838896 62838973 - Mir743b miRNA miRNA MGP_C3HHeJ_T0016328.1 MGP_C3HHeJ_G0014432.1 mouse_genomes_project X 93744047 93746412 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016128.1 MGP_C3HHeJ_G0014232.1 mouse_genomes_project X 52114087 52114378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016308.1 MGP_C3HHeJ_G0014412.1 mouse_genomes_project X 91086925 91087778 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095344.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15798133 15810060 + MGP_C3HHeJ_P0095344 Cdk16 protein_coding protein_coding MGP_C3HHeJ_T0095345.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15798178 15804542 + Cdk16 protein_coding processed_transcript MGP_C3HHeJ_T0095346.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15798597 15810060 + MGP_C3HHeJ_P0095346 Cdk16 protein_coding protein_coding MGP_C3HHeJ_T0095347.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15804462 15806465 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095348.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806040 15806665 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095349.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806197 15807388 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095350.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806584 15807347 + Cdk16 protein_coding retained_intron MGP_C3HHeJ_T0095351.1 MGP_C3HHeJ_G0035283.1 mouse_genomes_project X 15806624 15809979 + Cdk16 protein_coding processed_transcript MGP_C3HHeJ_T0016310.1 MGP_C3HHeJ_G0014414.1 mouse_genomes_project X 91105800 91106501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016159.1 MGP_C3HHeJ_G0014263.1 mouse_genomes_project X 58093897 58095127 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095063.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2393546 2403253 - MGP_C3HHeJ_P0095063 Ccdc120 protein_coding protein_coding MGP_C3HHeJ_T0095064.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2399793 2402122 - MGP_C3HHeJ_P0095064 Ccdc120 protein_coding protein_coding MGP_C3HHeJ_T0095065.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400050 2403220 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095066.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400064 2402143 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095067.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400075 2403236 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095068.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400202 2402119 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095069.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400292 2414521 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0095070.1 MGP_C3HHeJ_G0035204.1 mouse_genomes_project X 2400345 2414513 - Ccdc120 protein_coding processed_transcript MGP_C3HHeJ_T0009307.1 MGP_C3HHeJ_G0007465.1 mouse_genomes_project X 82205873 82207644 + Gm14762 lincRNA lincRNA MGP_C3HHeJ_T0009308.1 MGP_C3HHeJ_G0007465.1 mouse_genomes_project X 82206642 82214793 + Gm14762 lincRNA lincRNA MGP_C3HHeJ_T0016562.1 MGP_C3HHeJ_G0014666.1 mouse_genomes_project X 139668700 139669060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016530.1 MGP_C3HHeJ_G0014634.1 mouse_genomes_project X 134639222 134640933 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016334.1 MGP_C3HHeJ_G0014438.1 mouse_genomes_project X 94891151 94893036 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016590.1 MGP_C3HHeJ_G0014694.1 mouse_genomes_project X 143794758 143795842 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097099.1 MGP_C3HHeJ_G0035799.1 mouse_genomes_project X 136849967 136855279 + MGP_C3HHeJ_P0097099 Trap1a protein_coding protein_coding MGP_C3HHeJ_T0095697.1 MGP_C3HHeJ_G0035399.1 mouse_genomes_project X 49157675 49159239 + MGP_C3HHeJ_P0095697 Cxx1c protein_coding protein_coding MGP_C3HHeJ_T0011670.1 MGP_C3HHeJ_G0009803.1 mouse_genomes_project X 100589910 100589991 + Gm27520 misc_RNA misc_RNA MGP_C3HHeJ_T0095308.1 MGP_C3HHeJ_G0035273.1 mouse_genomes_project X 13449068 13496318 - 4930578C19Rik protein_coding processed_transcript MGP_C3HHeJ_T0095309.1 MGP_C3HHeJ_G0035273.1 mouse_genomes_project X 13452614 13496292 - MGP_C3HHeJ_P0095309 4930578C19Rik protein_coding protein_coding MGP_C3HHeJ_T0016480.1 MGP_C3HHeJ_G0014584.1 mouse_genomes_project X 124103930 124104294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101299.1 MGP_C3HHeJ_G0039394.1 mouse_genomes_project X 69060245 69060977 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101300.1 MGP_C3HHeJ_G0039394.1 mouse_genomes_project X 69060245 69061144 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0102343.1 MGP_C3HHeJ_G0040306.1 mouse_genomes_project X 51593310 51608165 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099801.1 MGP_C3HHeJ_G0037995.1 mouse_genomes_project X 138251357 138251464 + Gm23199 snRNA snRNA MGP_C3HHeJ_T0016595.1 MGP_C3HHeJ_G0014699.1 mouse_genomes_project X 144370169 144371105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097211.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964188 141971438 + MGP_C3HHeJ_P0097211 Alg13 protein_coding protein_coding MGP_C3HHeJ_T0097212.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964384 142026093 + MGP_C3HHeJ_P0097212 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097213.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964387 141970391 + MGP_C3HHeJ_P0097213 Alg13 protein_coding protein_coding MGP_C3HHeJ_T0097214.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964387 141970418 + MGP_C3HHeJ_P0097214 Alg13 protein_coding protein_coding MGP_C3HHeJ_T0097215.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964387 141986759 + MGP_C3HHeJ_P0097215 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097216.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964402 142026093 + MGP_C3HHeJ_P0097216 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097217.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964407 141970262 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097218.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141964407 142026098 + MGP_C3HHeJ_P0097218 Alg13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097219.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141982892 141986026 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097220.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141983517 141990304 + Alg13 protein_coding retained_intron MGP_C3HHeJ_T0097221.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141986029 142026098 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097222.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141987460 141993523 + Alg13 protein_coding retained_intron MGP_C3HHeJ_T0097223.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141990280 142025452 + MGP_C3HHeJ_P0097223 Alg13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097224.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 141994605 142026098 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0097225.1 MGP_C3HHeJ_G0035834.1 mouse_genomes_project X 142005773 142021419 + Alg13 protein_coding processed_transcript MGP_C3HHeJ_T0016285.1 MGP_C3HHeJ_G0014389.1 mouse_genomes_project X 86586820 86588987 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098591.1 MGP_C3HHeJ_G0036785.1 mouse_genomes_project X 638258 709096 - Gm26618 sense_overlapping sense_overlapping MGP_C3HHeJ_T0096951.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850140 131852543 + MGP_C3HHeJ_P0096951 Rpl36a protein_coding protein_coding MGP_C3HHeJ_T0096952.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850175 131852549 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0096953.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850176 131852549 + MGP_C3HHeJ_P0096953 Rpl36a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096954.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850187 131852520 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0096955.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131850576 131851503 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0096956.1 MGP_C3HHeJ_G0035747.1 mouse_genomes_project X 131851567 131852483 + Rpl36a protein_coding retained_intron MGP_C3HHeJ_T0011663.1 MGP_C3HHeJ_G0009796.1 mouse_genomes_project X 64691853 64691909 + Gm27979 misc_RNA misc_RNA MGP_C3HHeJ_T0102333.1 MGP_C3HHeJ_G0040296.1 mouse_genomes_project X 3977784 3978297 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095567.1 MGP_C3HHeJ_G0035355.1 mouse_genomes_project X 40494491 40496379 + MGP_C3HHeJ_P0095567 Prr32 protein_coding protein_coding MGP_C3HHeJ_T0005506.1 MGP_C3HHeJ_G0004632.1 mouse_genomes_project X 44787913 44897110 - Gm14697 antisense antisense MGP_C3HHeJ_T0096165.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70604182 70607360 + Plxna3 protein_coding processed_transcript MGP_C3HHeJ_T0096166.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70604182 70619798 + MGP_C3HHeJ_P0096166 Plxna3 protein_coding protein_coding MGP_C3HHeJ_T0096167.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70607573 70619792 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096168.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70608862 70609820 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096169.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70609442 70610948 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096170.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70610348 70611445 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096171.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70613374 70614425 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096172.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70613457 70614268 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0096173.1 MGP_C3HHeJ_G0035513.1 mouse_genomes_project X 70616695 70619054 + Plxna3 protein_coding retained_intron MGP_C3HHeJ_T0011136.1 MGP_C3HHeJ_G0009269.1 mouse_genomes_project X 165422075 165422203 + Gm44376 miRNA miRNA MGP_C3HHeJ_T0016220.1 MGP_C3HHeJ_G0014324.1 mouse_genomes_project X 72683020 72683792 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097426.1 MGP_C3HHeJ_G0035879.1 mouse_genomes_project X 153102883 153105117 - MGP_C3HHeJ_P0097426 protein_coding protein_coding MGP_C3HHeJ_T0009288.1 MGP_C3HHeJ_G0007450.1 mouse_genomes_project X 16492069 16501535 - lincRNA lincRNA MGP_C3HHeJ_T0016468.1 MGP_C3HHeJ_G0014572.1 mouse_genomes_project X 118529581 118531171 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016291.1 MGP_C3HHeJ_G0014395.1 mouse_genomes_project X 88167624 88168573 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095235.1 MGP_C3HHeJ_G0035251.1 mouse_genomes_project X 5363651 5478930 + Tspan7 protein_coding retained_intron MGP_C3HHeJ_T0095236.1 MGP_C3HHeJ_G0035251.1 mouse_genomes_project X 5363651 5478930 + MGP_C3HHeJ_P0095236 Tspan7 protein_coding protein_coding MGP_C3HHeJ_T0095237.1 MGP_C3HHeJ_G0035251.1 mouse_genomes_project X 5363651 5478930 + MGP_C3HHeJ_P0095237 Tspan7 protein_coding protein_coding MGP_C3HHeJ_T0016632.1 MGP_C3HHeJ_G0014736.1 mouse_genomes_project X 154903590 154904059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096412.1 MGP_C3HHeJ_G0035589.1 mouse_genomes_project X 91129843 91141581 - MGP_C3HHeJ_P0096412 Fam90a1b protein_coding protein_coding MGP_C3HHeJ_T0096413.1 MGP_C3HHeJ_G0035589.1 mouse_genomes_project X 91130662 91140557 - MGP_C3HHeJ_P0096413 Fam90a1b protein_coding protein_coding MGP_C3HHeJ_T0096414.1 MGP_C3HHeJ_G0035589.1 mouse_genomes_project X 91131946 91140833 - MGP_C3HHeJ_P0096414 Fam90a1b protein_coding protein_coding MGP_C3HHeJ_T0016533.1 MGP_C3HHeJ_G0014637.1 mouse_genomes_project X 135117764 135121199 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011130.1 MGP_C3HHeJ_G0009263.1 mouse_genomes_project X 144879027 144879139 + Mir448 miRNA miRNA MGP_C3HHeJ_T0016578.1 MGP_C3HHeJ_G0014682.1 mouse_genomes_project X 142228026 142229157 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016676.1 MGP_C3HHeJ_G0014780.1 mouse_genomes_project X 162203405 162203621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096802.1 MGP_C3HHeJ_G0035695.1 mouse_genomes_project X 105959568 105960456 - MGP_C3HHeJ_P0096802 Gm379 protein_coding protein_coding MGP_C3HHeJ_T0097652.1 MGP_C3HHeJ_G0035935.1 mouse_genomes_project X 164836308 164885474 - MGP_C3HHeJ_P0097652 Ofd1 protein_coding protein_coding MGP_C3HHeJ_T0096228.1 MGP_C3HHeJ_G0035529.1 mouse_genomes_project X 71219003 71236254 + MGP_C3HHeJ_P0096228 protein_coding protein_coding MGP_C3HHeJ_T0016139.1 MGP_C3HHeJ_G0014243.1 mouse_genomes_project X 55094334 55095010 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011064.1 MGP_C3HHeJ_G0009197.1 mouse_genomes_project X 56311823 56311913 - Mir505 miRNA miRNA MGP_C3HHeJ_T0097482.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157702309 157796024 + MGP_C3HHeJ_P0097482 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0097483.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157738246 157785767 + MGP_C3HHeJ_P0097483 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0097484.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157752576 157780739 + MGP_C3HHeJ_P0097484 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0097485.1 MGP_C3HHeJ_G0035894.1 mouse_genomes_project X 157752588 157764616 + MGP_C3HHeJ_P0097485 Map7d2 protein_coding protein_coding MGP_C3HHeJ_T0016227.1 MGP_C3HHeJ_G0014331.1 mouse_genomes_project X 73608982 73609510 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016512.1 MGP_C3HHeJ_G0014616.1 mouse_genomes_project X 133339087 133339807 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096814.1 MGP_C3HHeJ_G0035700.1 mouse_genomes_project X 107195802 107197616 + MGP_C3HHeJ_P0096814 protein_coding protein_coding MGP_C3HHeJ_T0097147.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138236244 138250370 + MGP_C3HHeJ_P0097147 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097148.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138236601 138345212 + MGP_C3HHeJ_P0097148 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097149.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138236717 138341492 + MGP_C3HHeJ_P0097149 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097150.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138249689 138345212 + MGP_C3HHeJ_P0097150 Mid2 protein_coding protein_coding MGP_C3HHeJ_T0097151.1 MGP_C3HHeJ_G0035813.1 mouse_genomes_project X 138325396 138328551 + Mid2 protein_coding retained_intron MGP_C3HHeJ_T0095208.1 MGP_C3HHeJ_G0035242.1 mouse_genomes_project X 4168597 4182146 + MGP_C3HHeJ_P0095208 Xk protein_coding protein_coding MGP_C3HHeJ_T0009324.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100678617 100747043 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009325.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100680607 100739667 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009326.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100687278 100739652 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009327.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100687278 100746952 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009328.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100727483 100747043 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0009329.1 MGP_C3HHeJ_G0007476.1 mouse_genomes_project X 100727536 100745789 - Ftx lincRNA lincRNA MGP_C3HHeJ_T0016465.1 MGP_C3HHeJ_G0014569.1 mouse_genomes_project X 117521729 117522185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096775.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448039 104471003 + MGP_C3HHeJ_P0096775 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096776.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448039 104473263 + MGP_C3HHeJ_P0096776 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096777.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448566 104471029 + MGP_C3HHeJ_P0096777 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096778.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448566 104473263 + MGP_C3HHeJ_P0096778 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096779.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448710 104470749 + MGP_C3HHeJ_P0096779 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0096780.1 MGP_C3HHeJ_G0035688.1 mouse_genomes_project X 104448727 104473259 + MGP_C3HHeJ_P0096780 A630033H20Rik protein_coding protein_coding MGP_C3HHeJ_T0095649.1 MGP_C3HHeJ_G0035378.1 mouse_genomes_project X 45310348 45311281 - MGP_C3HHeJ_P0095649 Olfr1322 protein_coding protein_coding MGP_C3HHeJ_T0009306.1 MGP_C3HHeJ_G0007464.1 mouse_genomes_project X 77386545 77389576 - Gm26775 lincRNA lincRNA MGP_C3HHeJ_T0016540.1 MGP_C3HHeJ_G0014644.1 mouse_genomes_project X 137209621 137212333 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096224.1 MGP_C3HHeJ_G0035525.1 mouse_genomes_project X 71143726 71153021 + MGP_C3HHeJ_P0096224 protein_coding protein_coding MGP_C3HHeJ_T0018413.1 MGP_C3HHeJ_G0015544.1 mouse_genomes_project X 99216742 99334002 + Gm14858 processed_transcript processed_transcript MGP_C3HHeJ_T0018414.1 MGP_C3HHeJ_G0015544.1 mouse_genomes_project X 99216871 99221886 + Gm14858 processed_transcript processed_transcript MGP_C3HHeJ_T0016187.1 MGP_C3HHeJ_G0014291.1 mouse_genomes_project X 64633526 64634741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011133.1 MGP_C3HHeJ_G0009266.1 mouse_genomes_project X 149876873 149876956 + Mirlet7f-2 miRNA miRNA MGP_C3HHeJ_T0016135.1 MGP_C3HHeJ_G0014239.1 mouse_genomes_project X 54125760 54126440 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016231.1 MGP_C3HHeJ_G0014335.1 mouse_genomes_project X 74345532 74345778 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009305.1 MGP_C3HHeJ_G0007463.1 mouse_genomes_project X 72267968 72282132 - Gm14715 lincRNA lincRNA MGP_C3HHeJ_T0101016.1 MGP_C3HHeJ_G0039210.1 mouse_genomes_project X 2192406 2192539 - Gm23082 snoRNA snoRNA MGP_C3HHeJ_T0016063.1 MGP_C3HHeJ_G0014167.1 mouse_genomes_project X 35121517 35121908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096349.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82156847 - MGP_C3HHeJ_P0096349 Gk protein_coding protein_coding MGP_C3HHeJ_T0096350.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82156834 - MGP_C3HHeJ_P0096350 Gk protein_coding protein_coding MGP_C3HHeJ_T0096351.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82157029 - MGP_C3HHeJ_P0096351 Gk protein_coding protein_coding MGP_C3HHeJ_T0096352.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82080275 82156863 - MGP_C3HHeJ_P0096352 Gk protein_coding protein_coding MGP_C3HHeJ_T0096353.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82085334 82090789 - Gk protein_coding processed_transcript MGP_C3HHeJ_T0096354.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82090708 82092772 - Gk protein_coding retained_intron MGP_C3HHeJ_T0096355.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82091005 82116576 - Gk protein_coding retained_intron MGP_C3HHeJ_T0096356.1 MGP_C3HHeJ_G0035565.1 mouse_genomes_project X 82138495 82141954 - Gk protein_coding retained_intron MGP_C3HHeJ_T0016623.1 MGP_C3HHeJ_G0014727.1 mouse_genomes_project X 153365645 153366005 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011085.1 MGP_C3HHeJ_G0009218.1 mouse_genomes_project X 67699910 67700002 - Gm23945 miRNA miRNA MGP_C3HHeJ_T0016660.1 MGP_C3HHeJ_G0014764.1 mouse_genomes_project X 159045564 159045847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016420.1 MGP_C3HHeJ_G0014524.1 mouse_genomes_project X 109650483 109654220 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016210.1 MGP_C3HHeJ_G0014314.1 mouse_genomes_project X 70862455 70863204 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101311.1 MGP_C3HHeJ_G0039400.1 mouse_genomes_project X 125528544 125529186 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101025.1 MGP_C3HHeJ_G0039219.1 mouse_genomes_project X 64699177 64699305 - Gm22435 snoRNA snoRNA MGP_C3HHeJ_T0096923.1 MGP_C3HHeJ_G0035739.1 mouse_genomes_project X 131381756 131394638 - MGP_C3HHeJ_P0096923 Xkrx protein_coding protein_coding MGP_C3HHeJ_T0096924.1 MGP_C3HHeJ_G0035739.1 mouse_genomes_project X 131383823 131394786 - Xkrx protein_coding processed_transcript MGP_C3HHeJ_T0095603.1 MGP_C3HHeJ_G0035365.1 mouse_genomes_project X 43860097 43905808 - MGP_C3HHeJ_P0095603 Elf4 protein_coding protein_coding MGP_C3HHeJ_T0095604.1 MGP_C3HHeJ_G0035365.1 mouse_genomes_project X 43860100 43915274 - MGP_C3HHeJ_P0095604 Elf4 protein_coding protein_coding MGP_C3HHeJ_T0095605.1 MGP_C3HHeJ_G0035365.1 mouse_genomes_project X 43865710 43915274 - MGP_C3HHeJ_P0095605 Elf4 protein_coding protein_coding MGP_C3HHeJ_T0016257.1 MGP_C3HHeJ_G0014361.1 mouse_genomes_project X 81605386 81606501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095352.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15815131 15831948 + MGP_C3HHeJ_P0095352 Usp11 protein_coding protein_coding MGP_C3HHeJ_T0095353.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15815159 15824379 + Usp11 protein_coding processed_transcript MGP_C3HHeJ_T0095354.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15815185 15829094 + Usp11 protein_coding retained_intron MGP_C3HHeJ_T0095355.1 MGP_C3HHeJ_G0035284.1 mouse_genomes_project X 15823050 15831946 + Usp11 protein_coding retained_intron MGP_C3HHeJ_T0096427.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91880170 92033283 - MGP_C3HHeJ_P0096427 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096428.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91880173 92001303 - MGP_C3HHeJ_P0096428 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096429.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91880179 92001405 - MGP_C3HHeJ_P0096429 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096430.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91881412 92033286 - MGP_C3HHeJ_P0096430 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096431.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91881501 92033614 - MGP_C3HHeJ_P0096431 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096432.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91882759 92033602 - MGP_C3HHeJ_P0096432 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096433.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91882790 92033637 - MGP_C3HHeJ_P0096433 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096434.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91882839 91914613 - MGP_C3HHeJ_P0096434 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096435.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91883154 91886180 - MGP_C3HHeJ_P0096435 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096436.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91883155 91890186 - MGP_C3HHeJ_P0096436 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096437.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91883208 92000516 - MGP_C3HHeJ_P0096437 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096438.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91910073 92000744 - MGP_C3HHeJ_P0096438 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096439.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91914533 92033233 - MGP_C3HHeJ_P0096439 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096440.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91934583 92001458 - MGP_C3HHeJ_P0096440 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0096441.1 MGP_C3HHeJ_G0035594.1 mouse_genomes_project X 91947005 92001357 - MGP_C3HHeJ_P0096441 Arhgef9 protein_coding protein_coding MGP_C3HHeJ_T0097411.1 MGP_C3HHeJ_G0035871.1 mouse_genomes_project X 151644008 151644839 + MGP_C3HHeJ_P0097411 Cypt3 protein_coding protein_coding MGP_C3HHeJ_T0097412.1 MGP_C3HHeJ_G0035871.1 mouse_genomes_project X 151644008 151644845 + MGP_C3HHeJ_P0097412 Cypt3 protein_coding protein_coding MGP_C3HHeJ_T0096648.1 MGP_C3HHeJ_G0035645.1 mouse_genomes_project X 99020150 99024803 - MGP_C3HHeJ_P0096648 Rgag4 protein_coding protein_coding MGP_C3HHeJ_T0096649.1 MGP_C3HHeJ_G0035645.1 mouse_genomes_project X 99020150 99024911 - MGP_C3HHeJ_P0096649 Rgag4 protein_coding protein_coding MGP_C3HHeJ_T0096650.1 MGP_C3HHeJ_G0035645.1 mouse_genomes_project X 99020340 99021207 - Rgag4 protein_coding processed_transcript MGP_C3HHeJ_T0102346.1 MGP_C3HHeJ_G0040309.1 mouse_genomes_project X 66455936 66456776 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016473.1 MGP_C3HHeJ_G0014577.1 mouse_genomes_project X 119438660 119438956 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095630.1 MGP_C3HHeJ_G0035372.1 mouse_genomes_project X 44300006 44333588 - MGP_C3HHeJ_P0095630 Gm595 protein_coding protein_coding MGP_C3HHeJ_T0098218.1 MGP_C3HHeJ_G0036430.1 mouse_genomes_project X 8165709 8165821 - n-R5s3 rRNA rRNA MGP_C3HHeJ_T0099751.1 MGP_C3HHeJ_G0037945.1 mouse_genomes_project X 17574960 17575063 + Gm25812 snRNA snRNA MGP_C3HHeJ_T0016138.1 MGP_C3HHeJ_G0014242.1 mouse_genomes_project X 54591844 54592306 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095679.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48402544 48438980 + MGP_C3HHeJ_P0095679 Phf6 protein_coding protein_coding MGP_C3HHeJ_T0095680.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48402623 48447361 + MGP_C3HHeJ_P0095680 Phf6 protein_coding protein_coding MGP_C3HHeJ_T0095681.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48415068 48431109 + Phf6 protein_coding processed_transcript MGP_C3HHeJ_T0095682.1 MGP_C3HHeJ_G0035391.1 mouse_genomes_project X 48415070 48431128 + Phf6 protein_coding processed_transcript MGP_C3HHeJ_T0016007.1 MGP_C3HHeJ_G0014111.1 mouse_genomes_project X 8349133 8349946 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011057.1 MGP_C3HHeJ_G0009190.1 mouse_genomes_project X 48543815 48543900 - Mir542 miRNA miRNA MGP_C3HHeJ_T0016496.1 MGP_C3HHeJ_G0014600.1 mouse_genomes_project X 130105913 130106965 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016050.1 MGP_C3HHeJ_G0014154.1 mouse_genomes_project X 31442427 31443033 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016629.1 MGP_C3HHeJ_G0014733.1 mouse_genomes_project X 153704962 153705532 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095475.1 MGP_C3HHeJ_G0035333.1 mouse_genomes_project X 33398310 33406359 - MGP_C3HHeJ_P0095475 Rhox12 protein_coding protein_coding MGP_C3HHeJ_T0095476.1 MGP_C3HHeJ_G0035333.1 mouse_genomes_project X 33398411 33403640 - MGP_C3HHeJ_P0095476 Rhox12 protein_coding protein_coding MGP_C3HHeJ_T0095477.1 MGP_C3HHeJ_G0035333.1 mouse_genomes_project X 33399810 33406239 - MGP_C3HHeJ_P0095477 Rhox12 protein_coding protein_coding MGP_C3HHeJ_T0096184.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70650088 - MGP_C3HHeJ_P0096184 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0096185.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70652319 - MGP_C3HHeJ_P0096185 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0096186.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70652378 - MGP_C3HHeJ_P0096186 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0096187.1 MGP_C3HHeJ_G0035516.1 mouse_genomes_project X 70648293 70652422 - MGP_C3HHeJ_P0096187 Slc10a3 protein_coding protein_coding MGP_C3HHeJ_T0095408.1 MGP_C3HHeJ_G0035301.1 mouse_genomes_project X 19031459 19055437 + MGP_C3HHeJ_P0095408 Gm4907 protein_coding protein_coding MGP_C3HHeJ_T0095409.1 MGP_C3HHeJ_G0035301.1 mouse_genomes_project X 19040650 19055327 + MGP_C3HHeJ_P0095409 Gm4907 protein_coding protein_coding MGP_C3HHeJ_T0011087.1 MGP_C3HHeJ_G0009220.1 mouse_genomes_project X 68446286 68446371 - Mir452 miRNA miRNA MGP_C3HHeJ_T0096282.1 MGP_C3HHeJ_G0035541.1 mouse_genomes_project X 71913882 71920068 - MGP_C3HHeJ_P0096282 Rab39b protein_coding protein_coding MGP_C3HHeJ_T0016102.1 MGP_C3HHeJ_G0014206.1 mouse_genomes_project X 45013682 45013941 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096501.1 MGP_C3HHeJ_G0035612.1 mouse_genomes_project X 95996616 96009433 + MGP_C3HHeJ_P0096501 Efnb1 protein_coding protein_coding MGP_C3HHeJ_T0096502.1 MGP_C3HHeJ_G0035612.1 mouse_genomes_project X 95998610 96007674 + Efnb1 protein_coding processed_transcript MGP_C3HHeJ_T0016098.1 MGP_C3HHeJ_G0014202.1 mouse_genomes_project X 43749138 43749486 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011089.1 MGP_C3HHeJ_G0009222.1 mouse_genomes_project X 68781242 68781322 - Mir105 miRNA miRNA MGP_C3HHeJ_T0095803.1 MGP_C3HHeJ_G0035440.1 mouse_genomes_project X 62433581 62434445 - MGP_C3HHeJ_P0095803 4930447F04Rik protein_coding protein_coding MGP_C3HHeJ_T0016126.1 MGP_C3HHeJ_G0014230.1 mouse_genomes_project X 51864274 51864757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016382.1 MGP_C3HHeJ_G0014486.1 mouse_genomes_project X 102148677 102149172 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016226.1 MGP_C3HHeJ_G0014330.1 mouse_genomes_project X 73606037 73607021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016353.1 MGP_C3HHeJ_G0014457.1 mouse_genomes_project X 99169750 99170107 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095494.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866590 33898346 - MGP_C3HHeJ_P0095494 Cul4b protein_coding protein_coding MGP_C3HHeJ_T0095495.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866590 33910976 - MGP_C3HHeJ_P0095495 Cul4b protein_coding protein_coding MGP_C3HHeJ_T0095496.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866886 33898483 - MGP_C3HHeJ_P0095496 Cul4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095497.1 MGP_C3HHeJ_G0035339.1 mouse_genomes_project X 33866890 33910963 - MGP_C3HHeJ_P0095497 Cul4b protein_coding protein_coding MGP_C3HHeJ_T0102338.1 MGP_C3HHeJ_G0040301.1 mouse_genomes_project X 32968893 32969404 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016614.1 MGP_C3HHeJ_G0014718.1 mouse_genomes_project X 151283004 151283278 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015981.1 MGP_C3HHeJ_G0014085.1 mouse_genomes_project X 3774520 3775114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018385.1 MGP_C3HHeJ_G0015534.1 mouse_genomes_project X 35449320 35868183 + processed_transcript processed_transcript MGP_C3HHeJ_T0097623.1 MGP_C3HHeJ_G0035928.1 mouse_genomes_project X 162940605 162972442 + MGP_C3HHeJ_P0097623 Asb9 protein_coding protein_coding MGP_C3HHeJ_T0016538.1 MGP_C3HHeJ_G0014642.1 mouse_genomes_project X 136759653 136760346 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016687.1 MGP_C3HHeJ_G0014791.1 mouse_genomes_project X 165495761 165496296 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097392.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150615776 150784137 - MGP_C3HHeJ_P0097392 Shroom2 protein_coding protein_coding MGP_C3HHeJ_T0097393.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150616259 150653262 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0097394.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150616259 150784141 - MGP_C3HHeJ_P0097394 Shroom2 protein_coding protein_coding MGP_C3HHeJ_T0097395.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150618795 150681152 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0097396.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150626259 150652643 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0097397.1 MGP_C3HHeJ_G0035863.1 mouse_genomes_project X 150626468 150652829 - Shroom2 protein_coding processed_transcript MGP_C3HHeJ_T0016580.1 MGP_C3HHeJ_G0014684.1 mouse_genomes_project X 142517991 142520601 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097169.1 MGP_C3HHeJ_G0035822.1 mouse_genomes_project X 139484533 139486306 - Gm15294 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0097170.1 MGP_C3HHeJ_G0035822.1 mouse_genomes_project X 139485575 139485941 - MGP_C3HHeJ_P0097170 Gm15294 protein_coding protein_coding MGP_C3HHeJ_T0101318.1 MGP_C3HHeJ_G0039406.1 mouse_genomes_project X 150498714 150500914 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101319.1 MGP_C3HHeJ_G0039406.1 mouse_genomes_project X 150499487 150500629 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0096328.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 79256111 79823163 + protein_coding retained_intron MGP_C3HHeJ_T0096329.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 79256144 81574136 + MGP_C3HHeJ_P0096329 protein_coding protein_coding MGP_C3HHeJ_T0096330.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 79351085 80070159 + protein_coding retained_intron MGP_C3HHeJ_T0096332.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80198946 80239500 + protein_coding processed_transcript MGP_C3HHeJ_T0096333.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80282107 80283109 + protein_coding processed_transcript MGP_C3HHeJ_T0096334.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80432166 80659828 + protein_coding processed_transcript MGP_C3HHeJ_T0096335.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 80947686 81512397 + protein_coding retained_intron MGP_C3HHeJ_T0096336.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81121750 81332493 + protein_coding retained_intron MGP_C3HHeJ_T0096337.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409867 81417131 + protein_coding retained_intron MGP_C3HHeJ_T0096338.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409891 81506022 + protein_coding retained_intron MGP_C3HHeJ_T0096339.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409894 81512395 + protein_coding retained_intron MGP_C3HHeJ_T0096340.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409945 81573041 + MGP_C3HHeJ_P0096340 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096341.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409985 81573034 + MGP_C3HHeJ_P0096341 protein_coding protein_coding MGP_C3HHeJ_T0096342.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81409985 81570493 + MGP_C3HHeJ_P0096342 protein_coding protein_coding MGP_C3HHeJ_T0096343.1 MGP_C3HHeJ_G0035561.1 mouse_genomes_project X 81545945 81570832 + protein_coding processed_transcript MGP_C3HHeJ_T0096525.1 MGP_C3HHeJ_G0035619.1 mouse_genomes_project X 97416289 97437323 + Dgat2l6 protein_coding retained_intron MGP_C3HHeJ_T0096526.1 MGP_C3HHeJ_G0035619.1 mouse_genomes_project X 97416292 97437576 + MGP_C3HHeJ_P0096526 Dgat2l6 protein_coding protein_coding MGP_C3HHeJ_T0095106.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2551697 2553757 + Pim2 protein_coding retained_intron MGP_C3HHeJ_T0095107.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2551737 2556867 + MGP_C3HHeJ_P0095107 Pim2 protein_coding protein_coding MGP_C3HHeJ_T0095108.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2551741 2556863 + MGP_C3HHeJ_P0095108 Pim2 protein_coding protein_coding MGP_C3HHeJ_T0095109.1 MGP_C3HHeJ_G0035209.1 mouse_genomes_project X 2552053 2554837 + Pim2 protein_coding processed_transcript MGP_C3HHeJ_T0011036.1 MGP_C3HHeJ_G0009169.1 mouse_genomes_project X 15981911 15981968 - Mir5617 miRNA miRNA MGP_C3HHeJ_T0016013.1 MGP_C3HHeJ_G0014117.1 mouse_genomes_project X 10541346 10541888 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102354.1 MGP_C3HHeJ_G0040317.1 mouse_genomes_project X 74378794 74389627 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016692.1 MGP_C3HHeJ_G0014796.1 mouse_genomes_project X 166882292 166882687 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016450.1 MGP_C3HHeJ_G0014554.1 mouse_genomes_project X 114662943 114664629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099809.1 MGP_C3HHeJ_G0038003.1 mouse_genomes_project X 152861402 152861510 + Gm22359 snRNA snRNA MGP_C3HHeJ_T0097316.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149115780 149264418 + MGP_C3HHeJ_P0097316 Wnk3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097317.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149145601 149264476 + MGP_C3HHeJ_P0097317 Wnk3 protein_coding protein_coding MGP_C3HHeJ_T0097318.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149145663 149264418 + MGP_C3HHeJ_P0097318 Wnk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097319.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149145663 149267599 + MGP_C3HHeJ_P0097319 Wnk3 protein_coding protein_coding MGP_C3HHeJ_T0097320.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149155273 149174976 + Wnk3 protein_coding processed_transcript MGP_C3HHeJ_T0097321.1 MGP_C3HHeJ_G0035851.1 mouse_genomes_project X 149238044 149269442 + Wnk3 protein_coding processed_transcript MGP_C3HHeJ_T0098221.1 MGP_C3HHeJ_G0036433.1 mouse_genomes_project X 45305155 45305243 + n-R5s6 rRNA rRNA MGP_C3HHeJ_T0102355.1 MGP_C3HHeJ_G0040318.1 mouse_genomes_project X 82702861 82704494 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095822.1 MGP_C3HHeJ_G0035447.1 mouse_genomes_project X 64783505 64841495 + MGP_C3HHeJ_P0095822 Fmr1nb protein_coding protein_coding MGP_C3HHeJ_T0095823.1 MGP_C3HHeJ_G0035447.1 mouse_genomes_project X 64783547 64841495 + MGP_C3HHeJ_P0095823 Fmr1nb protein_coding protein_coding MGP_C3HHeJ_T0095824.1 MGP_C3HHeJ_G0035447.1 mouse_genomes_project X 64783600 64841495 + MGP_C3HHeJ_P0095824 Fmr1nb protein_coding protein_coding MGP_C3HHeJ_T0095220.1 MGP_C3HHeJ_G0035247.1 mouse_genomes_project X 4752913 4855509 + MGP_C3HHeJ_P0095220 Sytl5 protein_coding protein_coding MGP_C3HHeJ_T0095221.1 MGP_C3HHeJ_G0035247.1 mouse_genomes_project X 4752913 4855509 + MGP_C3HHeJ_P0095221 Sytl5 protein_coding protein_coding MGP_C3HHeJ_T0016125.1 MGP_C3HHeJ_G0014229.1 mouse_genomes_project X 51708377 51712983 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096631.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566290 98614520 + MGP_C3HHeJ_P0096631 Ogt protein_coding protein_coding MGP_C3HHeJ_T0096632.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566292 98581016 + Ogt protein_coding retained_intron MGP_C3HHeJ_T0096633.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566294 98615931 + MGP_C3HHeJ_P0096633 Ogt protein_coding protein_coding MGP_C3HHeJ_T0096634.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566324 98582457 + Ogt protein_coding processed_transcript MGP_C3HHeJ_T0096635.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566338 98582725 + Ogt protein_coding retained_intron MGP_C3HHeJ_T0096636.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98566370 98581033 + Ogt protein_coding retained_intron MGP_C3HHeJ_T0096637.1 MGP_C3HHeJ_G0035641.1 mouse_genomes_project X 98583483 98614738 + Ogt protein_coding processed_transcript MGP_C3HHeJ_T0016672.1 MGP_C3HHeJ_G0014776.1 mouse_genomes_project X 161609083 161609564 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016068.1 MGP_C3HHeJ_G0014172.1 mouse_genomes_project X 36050848 36051408 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016354.1 MGP_C3HHeJ_G0014458.1 mouse_genomes_project X 99629791 99631196 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097123.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137438294 137547499 - MGP_C3HHeJ_P0097123 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097124.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137492851 137547461 - MGP_C3HHeJ_P0097124 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097125.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137492883 137547446 - MGP_C3HHeJ_P0097125 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097126.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137493714 137547455 - MGP_C3HHeJ_P0097126 Rbm41 protein_coding protein_coding MGP_C3HHeJ_T0097127.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137516512 137542986 - Rbm41 protein_coding retained_intron MGP_C3HHeJ_T0097128.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137517296 137547440 - Rbm41 protein_coding processed_transcript MGP_C3HHeJ_T0097129.1 MGP_C3HHeJ_G0035807.1 mouse_genomes_project X 137541260 137547470 - Rbm41 protein_coding retained_intron MGP_C3HHeJ_T0094986.1 MGP_C3HHeJ_G0035182.1 mouse_genomes_project X 60259 62627 - MGP_C3HHeJ_P0094986 Mycs protein_coding protein_coding MGP_C3HHeJ_T0095271.1 MGP_C3HHeJ_G0035259.1 mouse_genomes_project X 8433046 8456261 + MGP_C3HHeJ_P0095271 Nyx protein_coding protein_coding MGP_C3HHeJ_T0101307.1 MGP_C3HHeJ_G0039398.1 mouse_genomes_project X 102148656 102149222 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101308.1 MGP_C3HHeJ_G0039398.1 mouse_genomes_project X 102148677 102149172 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016267.1 MGP_C3HHeJ_G0014371.1 mouse_genomes_project X 84204663 84205674 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097563.1 MGP_C3HHeJ_G0035911.1 mouse_genomes_project X 161248902 161280067 - MGP_C3HHeJ_P0097563 Syap1 protein_coding protein_coding MGP_C3HHeJ_T0097564.1 MGP_C3HHeJ_G0035911.1 mouse_genomes_project X 161249754 161255109 - Syap1 protein_coding retained_intron MGP_C3HHeJ_T0095742.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52932903 52953096 + MGP_C3HHeJ_P0095742 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095743.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52934109 52952085 + MGP_C3HHeJ_P0095743 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095744.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52934171 52953096 + MGP_C3HHeJ_P0095744 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095745.1 MGP_C3HHeJ_G0035417.1 mouse_genomes_project X 52945024 52948423 + MGP_C3HHeJ_P0095745 Vgll1 protein_coding protein_coding MGP_C3HHeJ_T0095720.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52569756 52635960 + MGP_C3HHeJ_P0095720 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095721.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52569834 52635952 + MGP_C3HHeJ_P0095721 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095722.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52570092 52634849 + MGP_C3HHeJ_P0095722 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095723.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622056 52635954 + MGP_C3HHeJ_P0095723 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095724.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622342 52635954 + MGP_C3HHeJ_P0095724 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095725.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622349 52635202 + MGP_C3HHeJ_P0095725 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095726.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52622438 52631819 + MGP_C3HHeJ_P0095726 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095727.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52629144 52633280 + MGP_C3HHeJ_P0095727 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095728.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52630338 52631869 + MGP_C3HHeJ_P0095728 Fhl1 protein_coding protein_coding MGP_C3HHeJ_T0095729.1 MGP_C3HHeJ_G0035412.1 mouse_genomes_project X 52630611 52632357 + Fhl1 protein_coding processed_transcript MGP_C3HHeJ_T0096291.1 MGP_C3HHeJ_G0035546.1 mouse_genomes_project X 72771495 72776118 + MGP_C3HHeJ_P0096291 Cldn34b4 protein_coding protein_coding MGP_C3HHeJ_T0096292.1 MGP_C3HHeJ_G0035546.1 mouse_genomes_project X 72771597 72776027 + MGP_C3HHeJ_P0096292 Cldn34b4 protein_coding protein_coding MGP_C3HHeJ_T0095266.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8247367 8263313 + Ddx3x protein_coding processed_transcript MGP_C3HHeJ_T0095267.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8247369 8262783 + MGP_C3HHeJ_P0095267 Ddx3x protein_coding protein_coding MGP_C3HHeJ_T0095268.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8247377 8255922 + Ddx3x protein_coding retained_intron MGP_C3HHeJ_T0095269.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8255333 8256902 + Ddx3x protein_coding retained_intron MGP_C3HHeJ_T0095270.1 MGP_C3HHeJ_G0035258.1 mouse_genomes_project X 8255834 8257965 + Ddx3x protein_coding retained_intron MGP_C3HHeJ_T0095469.1 MGP_C3HHeJ_G0035328.1 mouse_genomes_project X 33162605 33165315 - MGP_C3HHeJ_P0095469 protein_coding protein_coding MGP_C3HHeJ_T0096245.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71418180 71443188 - MGP_C3HHeJ_P0096245 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096246.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71419095 71443016 - MGP_C3HHeJ_P0096246 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096247.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71420163 71443121 - MGP_C3HHeJ_P0096247 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096248.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71420800 71443026 - MGP_C3HHeJ_P0096248 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096249.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71422012 71443026 - Mpp1 protein_coding processed_transcript MGP_C3HHeJ_T0096250.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71424282 71426295 - Mpp1 protein_coding retained_intron MGP_C3HHeJ_T0096251.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71424508 71443026 - MGP_C3HHeJ_P0096251 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096252.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71429918 71443026 - MGP_C3HHeJ_P0096252 Mpp1 protein_coding protein_coding MGP_C3HHeJ_T0096253.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71435176 71443158 - Mpp1 protein_coding retained_intron MGP_C3HHeJ_T0096254.1 MGP_C3HHeJ_G0035533.1 mouse_genomes_project X 71437999 71443125 - MGP_C3HHeJ_P0096254 Mpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0016428.1 MGP_C3HHeJ_G0014532.1 mouse_genomes_project X 110137281 110138216 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094987.1 MGP_C3HHeJ_G0035183.1 mouse_genomes_project X 659954 671055 + MGP_C3HHeJ_P0094987 Nudt11 protein_coding protein_coding MGP_C3HHeJ_T0095482.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501142 33557471 - MGP_C3HHeJ_P0095482 Tmem255a protein_coding protein_coding MGP_C3HHeJ_T0095483.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501875 33557481 - Tmem255a protein_coding retained_intron MGP_C3HHeJ_T0095484.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501875 33557481 - MGP_C3HHeJ_P0095484 Tmem255a protein_coding protein_coding MGP_C3HHeJ_T0095485.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33501875 33557481 - MGP_C3HHeJ_P0095485 Tmem255a protein_coding protein_coding MGP_C3HHeJ_T0095486.1 MGP_C3HHeJ_G0035336.1 mouse_genomes_project X 33520399 33557443 - Tmem255a protein_coding processed_transcript MGP_C3HHeJ_T0095303.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172229 13301195 + MGP_C3HHeJ_P0095303 Kdm6a protein_coding protein_coding MGP_C3HHeJ_T0095304.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172229 13301195 + MGP_C3HHeJ_P0095304 Kdm6a protein_coding protein_coding MGP_C3HHeJ_T0095305.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172302 13279447 + Kdm6a protein_coding retained_intron MGP_C3HHeJ_T0095306.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13172660 13299934 + MGP_C3HHeJ_P0095306 Kdm6a protein_coding unknown_likely_coding MGP_C3HHeJ_T0095307.1 MGP_C3HHeJ_G0035272.1 mouse_genomes_project X 13295798 13299539 + Kdm6a protein_coding retained_intron MGP_C3HHeJ_T0009310.1 MGP_C3HHeJ_G0007467.1 mouse_genomes_project X 89889907 89890599 + 1700003E24Rik lincRNA lincRNA MGP_C3HHeJ_T0016421.1 MGP_C3HHeJ_G0014525.1 mouse_genomes_project X 109657840 109662576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018410.1 MGP_C3HHeJ_G0015541.1 mouse_genomes_project X 70044434 70046814 + Gm14817 processed_transcript processed_transcript MGP_C3HHeJ_T0098230.1 MGP_C3HHeJ_G0036442.1 mouse_genomes_project X 149945569 149945676 + n-R5s14 rRNA rRNA MGP_C3HHeJ_T0095802.1 MGP_C3HHeJ_G0035439.1 mouse_genomes_project X 61195742 61197113 + MGP_C3HHeJ_P0095802 Ctag2 protein_coding protein_coding MGP_C3HHeJ_T0016432.1 MGP_C3HHeJ_G0014536.1 mouse_genomes_project X 111210769 111212122 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011113.1 MGP_C3HHeJ_G0009246.1 mouse_genomes_project X 113290101 113290189 + Gm24683 miRNA miRNA MGP_C3HHeJ_T0016489.1 MGP_C3HHeJ_G0014593.1 mouse_genomes_project X 127715195 127715637 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016605.1 MGP_C3HHeJ_G0014709.1 mouse_genomes_project X 149112133 149112518 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016243.1 MGP_C3HHeJ_G0014347.1 mouse_genomes_project X 76384339 76385041 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016527.1 MGP_C3HHeJ_G0014631.1 mouse_genomes_project X 134605329 134605916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016427.1 MGP_C3HHeJ_G0014531.1 mouse_genomes_project X 110128756 110128964 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101063.1 MGP_C3HHeJ_G0039257.1 mouse_genomes_project X 153354343 153354475 + Gm25429 snoRNA snoRNA MGP_C3HHeJ_T0016643.1 MGP_C3HHeJ_G0014747.1 mouse_genomes_project X 155919145 155919366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096417.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314077 91320750 - MGP_C3HHeJ_P0096417 Maged1 protein_coding protein_coding MGP_C3HHeJ_T0096418.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314079 91316439 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096419.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314079 91320597 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096420.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314079 91316168 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096421.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91314685 91316488 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096422.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91316278 91317430 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0096423.1 MGP_C3HHeJ_G0035591.1 mouse_genomes_project X 91319097 91320610 - Maged1 protein_coding retained_intron MGP_C3HHeJ_T0095253.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7602213 7691588 - MGP_C3HHeJ_P0095253 Med14 protein_coding protein_coding MGP_C3HHeJ_T0095254.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7605879 7643143 - MGP_C3HHeJ_P0095254 Med14 protein_coding protein_coding MGP_C3HHeJ_T0095255.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7606593 7691588 - Med14 protein_coding retained_intron MGP_C3HHeJ_T0095256.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7633405 7640960 - Med14 protein_coding retained_intron MGP_C3HHeJ_T0095257.1 MGP_C3HHeJ_G0035256.1 mouse_genomes_project X 7636161 7691588 - MGP_C3HHeJ_P0095257 Med14 protein_coding protein_coding MGP_C3HHeJ_T0016038.1 MGP_C3HHeJ_G0014142.1 mouse_genomes_project X 16269321 16270118 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016597.1 MGP_C3HHeJ_G0014701.1 mouse_genomes_project X 148289735 148289939 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096748.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103247539 103344974 + MGP_C3HHeJ_P0096748 Atp7a protein_coding protein_coding MGP_C3HHeJ_T0096749.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103247585 103344980 + MGP_C3HHeJ_P0096749 Atp7a protein_coding protein_coding MGP_C3HHeJ_T0096750.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103327642 103338576 + Atp7a protein_coding processed_transcript MGP_C3HHeJ_T0096751.1 MGP_C3HHeJ_G0035678.1 mouse_genomes_project X 103335504 103342459 + Atp7a protein_coding retained_intron MGP_C3HHeJ_T0095233.1 MGP_C3HHeJ_G0035250.1 mouse_genomes_project X 5130214 5199796 + MGP_C3HHeJ_P0095233 Otc protein_coding protein_coding MGP_C3HHeJ_T0095234.1 MGP_C3HHeJ_G0035250.1 mouse_genomes_project X 5130276 5195270 + MGP_C3HHeJ_P0095234 Otc protein_coding protein_coding MGP_C3HHeJ_T0016119.1 MGP_C3HHeJ_G0014223.1 mouse_genomes_project X 49173468 49174028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097061.1 MGP_C3HHeJ_G0035789.1 mouse_genomes_project X 134496074 134499859 + MGP_C3HHeJ_P0097061 Zcchc18 protein_coding protein_coding MGP_C3HHeJ_T0097062.1 MGP_C3HHeJ_G0035789.1 mouse_genomes_project X 134496078 134499597 + MGP_C3HHeJ_P0097062 Zcchc18 protein_coding protein_coding MGP_C3HHeJ_T0097063.1 MGP_C3HHeJ_G0035789.1 mouse_genomes_project X 134496217 134501953 + MGP_C3HHeJ_P0097063 Zcchc18 protein_coding protein_coding MGP_C3HHeJ_T0096848.1 MGP_C3HHeJ_G0035712.1 mouse_genomes_project X 109821271 109891664 - MGP_C3HHeJ_P0096848 Pof1b protein_coding protein_coding MGP_C3HHeJ_T0016293.1 MGP_C3HHeJ_G0014397.1 mouse_genomes_project X 88540304 88540499 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095887.1 MGP_C3HHeJ_G0035463.1 mouse_genomes_project X 68184237 68202953 + MGP_C3HHeJ_P0095887 Cnga2 protein_coding protein_coding MGP_C3HHeJ_T0095888.1 MGP_C3HHeJ_G0035463.1 mouse_genomes_project X 68184243 68194318 + Cnga2 protein_coding processed_transcript MGP_C3HHeJ_T0096884.1 MGP_C3HHeJ_G0035727.1 mouse_genomes_project X 124180830 124204857 + MGP_C3HHeJ_P0096884 Gm382 protein_coding protein_coding MGP_C3HHeJ_T0016158.1 MGP_C3HHeJ_G0014262.1 mouse_genomes_project X 57972481 57973471 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095612.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999788 44049678 - MGP_C3HHeJ_P0095612 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095613.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999788 44052203 - MGP_C3HHeJ_P0095613 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095614.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999789 44052124 - MGP_C3HHeJ_P0095614 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095615.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 43999790 44049306 - MGP_C3HHeJ_P0095615 Zfp280c protein_coding protein_coding MGP_C3HHeJ_T0095616.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 44000921 44001868 - Zfp280c protein_coding retained_intron MGP_C3HHeJ_T0095617.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 44035966 44052142 - Zfp280c protein_coding processed_transcript MGP_C3HHeJ_T0095618.1 MGP_C3HHeJ_G0035368.1 mouse_genomes_project X 44043639 44052255 - Zfp280c protein_coding processed_transcript MGP_C3HHeJ_T0095191.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987049 2988903 + MGP_C3HHeJ_P0095191 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0095192.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987067 2996149 + MGP_C3HHeJ_P0095192 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0095193.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987332 2996149 + MGP_C3HHeJ_P0095193 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0095194.1 MGP_C3HHeJ_G0035228.1 mouse_genomes_project X 2987661 2996144 + MGP_C3HHeJ_P0095194 Slc38a5 protein_coding protein_coding MGP_C3HHeJ_T0016300.1 MGP_C3HHeJ_G0014404.1 mouse_genomes_project X 90261936 90264673 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099770.1 MGP_C3HHeJ_G0037964.1 mouse_genomes_project X 62796650 62796789 + Gm23000 snRNA snRNA MGP_C3HHeJ_T0096481.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95391304 95738755 - MGP_C3HHeJ_P0096481 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096482.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95395155 95738551 - MGP_C3HHeJ_P0096482 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096483.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95395161 95415382 - MGP_C3HHeJ_P0096483 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096484.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95400472 95415328 - Ophn1 protein_coding processed_transcript MGP_C3HHeJ_T0096485.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95554465 95738795 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0096486.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95554693 95738755 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0096487.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95574768 95738755 - MGP_C3HHeJ_P0096487 Ophn1 protein_coding protein_coding MGP_C3HHeJ_T0096488.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95646471 95738379 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0096489.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95721259 95738154 - Ophn1 protein_coding processed_transcript MGP_C3HHeJ_T0096490.1 MGP_C3HHeJ_G0035609.1 mouse_genomes_project X 95734831 95738395 - Ophn1 protein_coding retained_intron MGP_C3HHeJ_T0098304.1 MGP_C3HHeJ_G0036516.1 mouse_genomes_project X 90306849 90306987 - Gm23557 scaRNA scaRNA MGP_C3HHeJ_T0005521.1 MGP_C3HHeJ_G0004645.1 mouse_genomes_project X 72637115 72637695 - Gm14707 antisense antisense MGP_C3HHeJ_T0016229.1 MGP_C3HHeJ_G0014333.1 mouse_genomes_project X 74031820 74033689 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095656.1 MGP_C3HHeJ_G0035382.1 mouse_genomes_project X 46314369 46362726 - MGP_C3HHeJ_P0095656 Frmd7 protein_coding protein_coding MGP_C3HHeJ_T0095657.1 MGP_C3HHeJ_G0035382.1 mouse_genomes_project X 46314369 46362726 - MGP_C3HHeJ_P0095657 Frmd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095169.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2858995 2882221 - MGP_C3HHeJ_P0095169 Tbc1d25 protein_coding protein_coding MGP_C3HHeJ_T0095170.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2858995 2882221 - MGP_C3HHeJ_P0095170 Tbc1d25 protein_coding protein_coding MGP_C3HHeJ_T0095171.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2859006 2881998 - Tbc1d25 protein_coding retained_intron MGP_C3HHeJ_T0095172.1 MGP_C3HHeJ_G0035224.1 mouse_genomes_project X 2859228 2881910 - MGP_C3HHeJ_P0095172 Tbc1d25 protein_coding protein_coding MGP_C3HHeJ_T0095504.1 MGP_C3HHeJ_G0035341.1 mouse_genomes_project X 33968966 33973269 - MGP_C3HHeJ_P0095504 C1galt1c1 protein_coding protein_coding MGP_C3HHeJ_T0095635.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44913081 44945621 + MGP_C3HHeJ_P0095635 Arhgap36 protein_coding protein_coding MGP_C3HHeJ_T0095636.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44919594 44949356 + MGP_C3HHeJ_P0095636 Arhgap36 protein_coding protein_coding MGP_C3HHeJ_T0095637.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44919721 44949354 + MGP_C3HHeJ_P0095637 Arhgap36 protein_coding protein_coding MGP_C3HHeJ_T0095638.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44934174 44949354 + MGP_C3HHeJ_P0095638 Arhgap36 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095639.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44934741 44944362 + Arhgap36 protein_coding processed_transcript MGP_C3HHeJ_T0095640.1 MGP_C3HHeJ_G0035374.1 mouse_genomes_project X 44942988 44944567 + Arhgap36 protein_coding processed_transcript MGP_C3HHeJ_T0095652.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46253779 46312287 + MGP_C3HHeJ_P0095652 Stk26 protein_coding protein_coding MGP_C3HHeJ_T0095653.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46254173 46298469 + Stk26 protein_coding retained_intron MGP_C3HHeJ_T0095654.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46254173 46312287 + MGP_C3HHeJ_P0095654 Stk26 protein_coding protein_coding MGP_C3HHeJ_T0095655.1 MGP_C3HHeJ_G0035381.1 mouse_genomes_project X 46296782 46310243 + Stk26 protein_coding retained_intron MGP_C3HHeJ_T0094988.1 MGP_C3HHeJ_G0035184.1 mouse_genomes_project X 697749 699950 - MGP_C3HHeJ_P0094988 AU022751 protein_coding protein_coding MGP_C3HHeJ_T0094989.1 MGP_C3HHeJ_G0035184.1 mouse_genomes_project X 697749 699950 - MGP_C3HHeJ_P0094989 AU022751 protein_coding protein_coding MGP_C3HHeJ_T0011129.1 MGP_C3HHeJ_G0009262.1 mouse_genomes_project X 144826239 144826377 + Gm24627 miRNA miRNA MGP_C3HHeJ_T0097527.1 MGP_C3HHeJ_G0035902.1 mouse_genomes_project X 159097743 159130786 + MGP_C3HHeJ_P0097527 Rs1 protein_coding protein_coding MGP_C3HHeJ_T0097528.1 MGP_C3HHeJ_G0035902.1 mouse_genomes_project X 159097910 159125976 + MGP_C3HHeJ_P0097528 Rs1 protein_coding protein_coding MGP_C3HHeJ_T0097532.1 MGP_C3HHeJ_G0035902.1 mouse_genomes_project X 159122623 159126473 + Rs1 protein_coding processed_transcript MGP_C3HHeJ_T0095292.1 MGP_C3HHeJ_G0035266.1 mouse_genomes_project X 11612075 11676206 + MGP_C3HHeJ_P0095292 Maoa protein_coding protein_coding MGP_C3HHeJ_T0016681.1 MGP_C3HHeJ_G0014785.1 mouse_genomes_project X 164464779 164465167 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016493.1 MGP_C3HHeJ_G0014597.1 mouse_genomes_project X 129031477 129033617 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018445.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191696 134207680 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018446.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191718 134209379 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018447.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191730 134194460 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018448.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134191760 134207658 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018449.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134192866 134251037 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018450.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134193285 134207695 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0018451.1 MGP_C3HHeJ_G0015551.1 mouse_genomes_project X 134215110 134251046 + BC065397 processed_transcript processed_transcript MGP_C3HHeJ_T0095950.1 MGP_C3HHeJ_G0035487.1 mouse_genomes_project X 69930183 69961140 - MGP_C3HHeJ_P0095950 Bcap31 protein_coding protein_coding MGP_C3HHeJ_T0096474.1 MGP_C3HHeJ_G0035605.1 mouse_genomes_project X 93835859 93836648 - MGP_C3HHeJ_P0096474 1700084M14Rik protein_coding protein_coding MGP_C3HHeJ_T0102361.1 MGP_C3HHeJ_G0040324.1 mouse_genomes_project X 88274778 88275697 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101305.1 MGP_C3HHeJ_G0039397.1 mouse_genomes_project X 100900917 100901666 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101306.1 MGP_C3HHeJ_G0039397.1 mouse_genomes_project X 100901104 100901537 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0016362.1 MGP_C3HHeJ_G0014466.1 mouse_genomes_project X 100422310 100422765 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016217.1 MGP_C3HHeJ_G0014321.1 mouse_genomes_project X 71824224 71824516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005533.1 MGP_C3HHeJ_G0004655.1 mouse_genomes_project X 142115565 142136021 + antisense antisense MGP_C3HHeJ_T0005534.1 MGP_C3HHeJ_G0004655.1 mouse_genomes_project X 142130136 142136018 + antisense antisense MGP_C3HHeJ_T0016607.1 MGP_C3HHeJ_G0014711.1 mouse_genomes_project X 149604303 149605218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016431.1 MGP_C3HHeJ_G0014535.1 mouse_genomes_project X 111200549 111202117 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005502.1 MGP_C3HHeJ_G0004628.1 mouse_genomes_project X 5607789 5609027 - Gm14493 antisense antisense MGP_C3HHeJ_T0096358.1 MGP_C3HHeJ_G0035567.1 mouse_genomes_project X 82433423 82436536 + MGP_C3HHeJ_P0096358 Samt3 protein_coding protein_coding MGP_C3HHeJ_T0095085.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457274 2492769 + MGP_C3HHeJ_P0095085 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095086.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457503 2484685 + MGP_C3HHeJ_P0095086 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095087.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457504 2492765 + MGP_C3HHeJ_P0095087 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095088.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457515 2462054 + Gripap1 protein_coding retained_intron MGP_C3HHeJ_T0095089.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457517 2492765 + MGP_C3HHeJ_P0095089 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095090.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457521 2484685 + MGP_C3HHeJ_P0095090 Gripap1 protein_coding protein_coding MGP_C3HHeJ_T0095091.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2457527 2492158 + Gripap1 protein_coding processed_transcript MGP_C3HHeJ_T0095092.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2465906 2483073 + Gripap1 protein_coding retained_intron MGP_C3HHeJ_T0095093.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2482511 2483060 + Gripap1 protein_coding processed_transcript MGP_C3HHeJ_T0095094.1 MGP_C3HHeJ_G0035206.1 mouse_genomes_project X 2491120 2492765 + Gripap1 protein_coding retained_intron MGP_C3HHeJ_T0016608.1 MGP_C3HHeJ_G0014712.1 mouse_genomes_project X 149706909 149707086 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096830.1 MGP_C3HHeJ_G0035705.1 mouse_genomes_project X 108756865 108860329 - MGP_C3HHeJ_P0096830 Hdx protein_coding protein_coding MGP_C3HHeJ_T0095832.1 MGP_C3HHeJ_G0035450.1 mouse_genomes_project X 66445037 66448577 + MGP_C3HHeJ_P0095832 1110012L19Rik protein_coding protein_coding MGP_C3HHeJ_T0016028.1 MGP_C3HHeJ_G0014132.1 mouse_genomes_project X 14815022 14815355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095403.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847207 18963268 + MGP_C3HHeJ_P0095403 protein_coding protein_coding MGP_C3HHeJ_T0095404.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847233 18909457 + protein_coding retained_intron MGP_C3HHeJ_T0095405.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847252 18963303 + MGP_C3HHeJ_P0095405 protein_coding protein_coding MGP_C3HHeJ_T0095406.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18847315 18914894 + MGP_C3HHeJ_P0095406 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095407.1 MGP_C3HHeJ_G0035300.1 mouse_genomes_project X 18933835 18938549 + protein_coding retained_intron MGP_C3HHeJ_T0018431.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139546 106196135 + processed_transcript processed_transcript MGP_C3HHeJ_T0018432.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139570 106195929 + processed_transcript processed_transcript MGP_C3HHeJ_T0018433.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139646 106274722 + processed_transcript processed_transcript MGP_C3HHeJ_T0018434.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139725 106195922 + processed_transcript processed_transcript MGP_C3HHeJ_T0018435.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139732 106146226 + processed_transcript retained_intron MGP_C3HHeJ_T0018436.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139747 106184104 + processed_transcript processed_transcript MGP_C3HHeJ_T0018437.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106139763 106184308 + processed_transcript processed_transcript MGP_C3HHeJ_T0018438.1 MGP_C3HHeJ_G0015546.1 mouse_genomes_project X 106210402 106275037 + processed_transcript processed_transcript MGP_C3HHeJ_T0016544.1 MGP_C3HHeJ_G0014648.1 mouse_genomes_project X 137635204 137636185 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016190.1 MGP_C3HHeJ_G0014294.1 mouse_genomes_project X 66496783 66497731 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097413.1 MGP_C3HHeJ_G0035872.1 mouse_genomes_project X 151779505 151790747 - MGP_C3HHeJ_P0097413 Kctd12b protein_coding protein_coding MGP_C3HHeJ_T0097414.1 MGP_C3HHeJ_G0035872.1 mouse_genomes_project X 151779505 151790616 - MGP_C3HHeJ_P0097414 Kctd12b protein_coding protein_coding MGP_C3HHeJ_T0016004.1 MGP_C3HHeJ_G0014108.1 mouse_genomes_project X 8203077 8204304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016100.1 MGP_C3HHeJ_G0014204.1 mouse_genomes_project X 44617706 44618055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002444.1 MGP_C3HHeJ_G0002362.1 mouse_genomes_project X 125528538 125530402 + TEC TEC MGP_C3HHeJ_T0016506.1 MGP_C3HHeJ_G0014610.1 mouse_genomes_project X 132111617 132112480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097193.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141150434 141435504 + MGP_C3HHeJ_P0097193 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097194.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141150541 141402712 + MGP_C3HHeJ_P0097194 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097195.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300042 141435504 + MGP_C3HHeJ_P0097195 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097196.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300125 141332011 + MGP_C3HHeJ_P0097196 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097197.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300143 141354796 + MGP_C3HHeJ_P0097197 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097198.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300278 141373201 + MGP_C3HHeJ_P0097198 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097199.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141300331 141435504 + MGP_C3HHeJ_P0097199 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097200.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141301497 141435504 + MGP_C3HHeJ_P0097200 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097201.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141301497 141435504 + MGP_C3HHeJ_P0097201 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0097202.1 MGP_C3HHeJ_G0035831.1 mouse_genomes_project X 141331912 141435508 + MGP_C3HHeJ_P0097202 Pak3 protein_coding protein_coding MGP_C3HHeJ_T0102378.1 MGP_C3HHeJ_G0040341.1 mouse_genomes_project X 158619373 158619666 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095761.1 MGP_C3HHeJ_G0035421.1 mouse_genomes_project X 53276511 53352124 + MGP_C3HHeJ_P0095761 Gm364 protein_coding protein_coding MGP_C3HHeJ_T0096384.1 MGP_C3HHeJ_G0035583.1 mouse_genomes_project X 90391101 90481786 + MGP_C3HHeJ_P0096384 Pcyt1b protein_coding protein_coding MGP_C3HHeJ_T0096385.1 MGP_C3HHeJ_G0035583.1 mouse_genomes_project X 90413153 90481786 + MGP_C3HHeJ_P0096385 Pcyt1b protein_coding protein_coding MGP_C3HHeJ_T0096386.1 MGP_C3HHeJ_G0035583.1 mouse_genomes_project X 90463393 90466687 + Pcyt1b protein_coding processed_transcript MGP_C3HHeJ_T0016379.1 MGP_C3HHeJ_G0014483.1 mouse_genomes_project X 101934042 101934416 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099773.1 MGP_C3HHeJ_G0037967.1 mouse_genomes_project X 71920644 71920808 - Gm25421 snRNA snRNA MGP_C3HHeJ_T0016654.1 MGP_C3HHeJ_G0014758.1 mouse_genomes_project X 157891002 157891565 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096794.1 MGP_C3HHeJ_G0035692.1 mouse_genomes_project X 105091824 105127108 - MGP_C3HHeJ_P0096794 2610002M06Rik protein_coding protein_coding MGP_C3HHeJ_T0096795.1 MGP_C3HHeJ_G0035692.1 mouse_genomes_project X 105096910 105104923 - 2610002M06Rik protein_coding retained_intron MGP_C3HHeJ_T0016638.1 MGP_C3HHeJ_G0014742.1 mouse_genomes_project X 155857570 155857705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016472.1 MGP_C3HHeJ_G0014576.1 mouse_genomes_project X 119322511 119324068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096415.1 MGP_C3HHeJ_G0035590.1 mouse_genomes_project X 91141957 91187232 + MGP_C3HHeJ_P0096415 Apoo protein_coding protein_coding MGP_C3HHeJ_T0096416.1 MGP_C3HHeJ_G0035590.1 mouse_genomes_project X 91141957 91192610 + MGP_C3HHeJ_P0096416 Apoo protein_coding protein_coding MGP_C3HHeJ_T0095250.1 MGP_C3HHeJ_G0035254.1 mouse_genomes_project X 7513882 7522663 + Atp6ap2 protein_coding retained_intron MGP_C3HHeJ_T0095251.1 MGP_C3HHeJ_G0035254.1 mouse_genomes_project X 7513882 7541535 + MGP_C3HHeJ_P0095251 Atp6ap2 protein_coding protein_coding MGP_C3HHeJ_T0011100.1 MGP_C3HHeJ_G0009233.1 mouse_genomes_project X 95570036 95570134 - Gm27554 miRNA miRNA MGP_C3HHeJ_T0016442.1 MGP_C3HHeJ_G0014546.1 mouse_genomes_project X 112724122 112725739 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011025.1 MGP_C3HHeJ_G0009158.1 mouse_genomes_project X 1875564 1875673 - Mir501 miRNA miRNA MGP_C3HHeJ_T0097365.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 149977772 150003956 + MGP_C3HHeJ_P0097365 Smc1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097366.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 149977772 150032335 + MGP_C3HHeJ_P0097366 Smc1a protein_coding protein_coding MGP_C3HHeJ_T0097367.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150004190 150005802 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0097368.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150016282 150017590 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0097369.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150028107 150029149 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0097370.1 MGP_C3HHeJ_G0035857.1 mouse_genomes_project X 150028715 150029421 + Smc1a protein_coding retained_intron MGP_C3HHeJ_T0011055.1 MGP_C3HHeJ_G0009188.1 mouse_genomes_project X 48542570 48542661 - Mir450-1 miRNA miRNA MGP_C3HHeJ_T0102339.1 MGP_C3HHeJ_G0040302.1 mouse_genomes_project X 33200813 33201823 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011107.1 MGP_C3HHeJ_G0009240.1 mouse_genomes_project X 101231056 101231147 + Gm24993 miRNA miRNA MGP_C3HHeJ_T0099789.1 MGP_C3HHeJ_G0037983.1 mouse_genomes_project X 106310649 106310816 - Gm23322 snRNA snRNA MGP_C3HHeJ_T0095716.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52443999 52472738 + MGP_C3HHeJ_P0095716 Slc9a6 protein_coding protein_coding MGP_C3HHeJ_T0095717.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52444017 52501629 + MGP_C3HHeJ_P0095717 Slc9a6 protein_coding protein_coding MGP_C3HHeJ_T0095718.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52444059 52501240 + MGP_C3HHeJ_P0095718 Slc9a6 protein_coding protein_coding MGP_C3HHeJ_T0095719.1 MGP_C3HHeJ_G0035411.1 mouse_genomes_project X 52495641 52501228 + Slc9a6 protein_coding retained_intron MGP_C3HHeJ_T0016341.1 MGP_C3HHeJ_G0014445.1 mouse_genomes_project X 97041275 97041597 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016679.1 MGP_C3HHeJ_G0014783.1 mouse_genomes_project X 163301051 163301328 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016477.1 MGP_C3HHeJ_G0014581.1 mouse_genomes_project X 123761508 123762007 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099788.1 MGP_C3HHeJ_G0037982.1 mouse_genomes_project X 103932330 103932437 - Gm24491 snRNA snRNA MGP_C3HHeJ_T0099787.1 MGP_C3HHeJ_G0037981.1 mouse_genomes_project X 103867343 103867505 - Gm24622 snRNA snRNA MGP_C3HHeJ_T0095005.1 MGP_C3HHeJ_G0035192.1 mouse_genomes_project X 2014824 2019367 - MGP_C3HHeJ_P0095005 Usp27x protein_coding protein_coding MGP_C3HHeJ_T0095006.1 MGP_C3HHeJ_G0035192.1 mouse_genomes_project X 2016131 2019371 - MGP_C3HHeJ_P0095006 Usp27x protein_coding protein_coding MGP_C3HHeJ_T0096590.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98205720 98232257 + MGP_C3HHeJ_P0096590 Nlgn3 protein_coding protein_coding MGP_C3HHeJ_T0096591.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98205733 98225308 + MGP_C3HHeJ_P0096591 Nlgn3 protein_coding protein_coding MGP_C3HHeJ_T0096592.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98205752 98232590 + MGP_C3HHeJ_P0096592 Nlgn3 protein_coding protein_coding MGP_C3HHeJ_T0096593.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98207038 98208639 + Nlgn3 protein_coding processed_transcript MGP_C3HHeJ_T0096594.1 MGP_C3HHeJ_G0035635.1 mouse_genomes_project X 98221023 98224784 + Nlgn3 protein_coding processed_transcript MGP_C3HHeJ_T0101018.1 MGP_C3HHeJ_G0039212.1 mouse_genomes_project X 32017014 32017101 + Gm23613 snoRNA snoRNA MGP_C3HHeJ_T0016349.1 MGP_C3HHeJ_G0014453.1 mouse_genomes_project X 98746197 98747078 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096931.1 MGP_C3HHeJ_G0035742.1 mouse_genomes_project X 131538455 131549126 + MGP_C3HHeJ_P0096931 Tmem35a protein_coding protein_coding MGP_C3HHeJ_T0016694.1 MGP_C3HHeJ_G0014798.1 mouse_genomes_project X 167290815 167291215 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096932.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131552034 131609346 + MGP_C3HHeJ_P0096932 Cenpi protein_coding protein_coding MGP_C3HHeJ_T0096933.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131552105 131609343 + MGP_C3HHeJ_P0096933 Cenpi protein_coding protein_coding MGP_C3HHeJ_T0096934.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131552149 131554201 + MGP_C3HHeJ_P0096934 Cenpi protein_coding protein_coding MGP_C3HHeJ_T0096935.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131556428 131590267 + Cenpi protein_coding processed_transcript MGP_C3HHeJ_T0096936.1 MGP_C3HHeJ_G0035743.1 mouse_genomes_project X 131591936 131609344 + Cenpi protein_coding processed_transcript MGP_C3HHeJ_T0016422.1 MGP_C3HHeJ_G0014526.1 mouse_genomes_project X 109845265 109846173 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096638.1 MGP_C3HHeJ_G0035642.1 mouse_genomes_project X 98672924 98675659 - MGP_C3HHeJ_P0096638 Cxcr3 protein_coding protein_coding MGP_C3HHeJ_T0016037.1 MGP_C3HHeJ_G0014141.1 mouse_genomes_project X 16032156 16032355 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016088.1 MGP_C3HHeJ_G0014192.1 mouse_genomes_project X 40812349 40813504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011032.1 MGP_C3HHeJ_G0009165.1 mouse_genomes_project X 10730860 10730924 + Gm22464 miRNA miRNA MGP_C3HHeJ_T0099814.1 MGP_C3HHeJ_G0038008.1 mouse_genomes_project X 161787989 161788109 - Gm26007 snRNA snRNA MGP_C3HHeJ_T0099790.1 MGP_C3HHeJ_G0037984.1 mouse_genomes_project X 106324840 106324947 - Gm25797 snRNA snRNA MGP_C3HHeJ_T0094991.1 MGP_C3HHeJ_G0035186.1 mouse_genomes_project X 941232 947847 - MGP_C3HHeJ_P0094991 Bmp15 protein_coding protein_coding MGP_C3HHeJ_T0096759.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103688152 103764442 - MGP_C3HHeJ_P0096759 protein_coding protein_coding MGP_C3HHeJ_T0096760.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103695844 103704180 - protein_coding retained_intron MGP_C3HHeJ_T0096761.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103695851 103706060 - protein_coding processed_transcript MGP_C3HHeJ_T0096762.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103705352 103707388 - protein_coding retained_intron MGP_C3HHeJ_T0096763.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103724535 103764190 - MGP_C3HHeJ_P0096763 protein_coding protein_coding MGP_C3HHeJ_T0096764.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103751867 103764065 - MGP_C3HHeJ_P0096764 protein_coding protein_coding MGP_C3HHeJ_T0096765.1 MGP_C3HHeJ_G0035682.1 mouse_genomes_project X 103751879 103764569 - MGP_C3HHeJ_P0096765 protein_coding protein_coding MGP_C3HHeJ_T0095899.1 MGP_C3HHeJ_G0035469.1 mouse_genomes_project X 69112148 69115300 - MGP_C3HHeJ_P0095899 Cetn2 protein_coding protein_coding MGP_C3HHeJ_T0095900.1 MGP_C3HHeJ_G0035469.1 mouse_genomes_project X 69112648 69116759 - MGP_C3HHeJ_P0095900 Cetn2 protein_coding protein_coding MGP_C3HHeJ_T0095901.1 MGP_C3HHeJ_G0035469.1 mouse_genomes_project X 69113352 69116727 - MGP_C3HHeJ_P0095901 Cetn2 protein_coding protein_coding MGP_C3HHeJ_T0096713.1 MGP_C3HHeJ_G0035674.1 mouse_genomes_project X 102973799 102984407 + MGP_C3HHeJ_P0096713 Fgf16 protein_coding protein_coding MGP_C3HHeJ_T0016071.1 MGP_C3HHeJ_G0014175.1 mouse_genomes_project X 36753984 36754240 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016230.1 MGP_C3HHeJ_G0014334.1 mouse_genomes_project X 74079462 74080231 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095016.1 MGP_C3HHeJ_G0035195.1 mouse_genomes_project X 2240884 2252451 - MGP_C3HHeJ_P0095016 Ccdc22 protein_coding protein_coding MGP_C3HHeJ_T0095017.1 MGP_C3HHeJ_G0035195.1 mouse_genomes_project X 2240885 2244355 - Ccdc22 protein_coding retained_intron MGP_C3HHeJ_T0016149.1 MGP_C3HHeJ_G0014253.1 mouse_genomes_project X 56848137 56848593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101291.1 MGP_C3HHeJ_G0039389.1 mouse_genomes_project X 10144115 10144997 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101292.1 MGP_C3HHeJ_G0039389.1 mouse_genomes_project X 10144362 10144911 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011676.1 MGP_C3HHeJ_G0009809.1 mouse_genomes_project X 106411827 106412119 - Gm26415 misc_RNA misc_RNA MGP_C3HHeJ_T0016278.1 MGP_C3HHeJ_G0014382.1 mouse_genomes_project X 85517902 85519068 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095394.1 MGP_C3HHeJ_G0035296.1 mouse_genomes_project X 16607999 16612620 + MGP_C3HHeJ_P0095394 Agtr2 protein_coding protein_coding MGP_C3HHeJ_T0095395.1 MGP_C3HHeJ_G0035296.1 mouse_genomes_project X 16608177 16609759 + Agtr2 protein_coding processed_transcript MGP_C3HHeJ_T0096781.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556089 104603340 + MGP_C3HHeJ_P0096781 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096782.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556118 104603935 + MGP_C3HHeJ_P0096782 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096783.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556175 104602475 + MGP_C3HHeJ_P0096783 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096784.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104556487 104602487 + MGP_C3HHeJ_P0096784 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0096785.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104569973 104599490 + Gpr174 protein_coding processed_transcript MGP_C3HHeJ_T0096786.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104586743 104599621 + Gpr174 protein_coding processed_transcript MGP_C3HHeJ_T0096787.1 MGP_C3HHeJ_G0035689.1 mouse_genomes_project X 104586743 104603937 + MGP_C3HHeJ_P0096787 Gpr174 protein_coding protein_coding MGP_C3HHeJ_T0016667.1 MGP_C3HHeJ_G0014771.1 mouse_genomes_project X 161083741 161084383 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097687.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167310954 167833201 + MGP_C3HHeJ_P0097687 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097688.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167783242 + Arhgap6 protein_coding retained_intron MGP_C3HHeJ_T0097689.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167785860 + MGP_C3HHeJ_P0097689 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097690.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167833201 + MGP_C3HHeJ_P0097690 Arhgap6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097691.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167833201 + MGP_C3HHeJ_P0097691 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097692.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167552638 167790803 + MGP_C3HHeJ_P0097692 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097693.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167632633 167833201 + MGP_C3HHeJ_P0097693 Arhgap6 protein_coding protein_coding MGP_C3HHeJ_T0097699.1 MGP_C3HHeJ_G0035946.1 mouse_genomes_project X 167750101 167823877 + MGP_C3HHeJ_P0097699 Arhgap6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018452.1 MGP_C3HHeJ_G0015552.1 mouse_genomes_project X 136742892 136873868 - Platr21 processed_transcript processed_transcript MGP_C3HHeJ_T0018453.1 MGP_C3HHeJ_G0015552.1 mouse_genomes_project X 136864587 136874840 - Platr21 processed_transcript processed_transcript MGP_C3HHeJ_T0097054.1 MGP_C3HHeJ_G0035786.1 mouse_genomes_project X 134394180 134395232 + MGP_C3HHeJ_P0097054 H2bfm protein_coding protein_coding MGP_C3HHeJ_T0096296.1 MGP_C3HHeJ_G0035549.1 mouse_genomes_project X 74083494 74120790 - MGP_C3HHeJ_P0096296 Prkx protein_coding protein_coding MGP_C3HHeJ_T0096297.1 MGP_C3HHeJ_G0035549.1 mouse_genomes_project X 74093540 74120502 - MGP_C3HHeJ_P0096297 Prkx protein_coding protein_coding MGP_C3HHeJ_T0016426.1 MGP_C3HHeJ_G0014530.1 mouse_genomes_project X 109997665 109998140 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011105.1 MGP_C3HHeJ_G0009238.1 mouse_genomes_project X 100690770 100690865 - Mir374b miRNA miRNA MGP_C3HHeJ_T0016348.1 MGP_C3HHeJ_G0014452.1 mouse_genomes_project X 98442101 98443362 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016388.1 MGP_C3HHeJ_G0014492.1 mouse_genomes_project X 102797968 102798206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016596.1 MGP_C3HHeJ_G0014700.1 mouse_genomes_project X 144642968 144643987 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018374.1 MGP_C3HHeJ_G0015527.1 mouse_genomes_project X 2203530 2252315 - Gm36995 processed_transcript retained_intron MGP_C3HHeJ_T0095258.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8014984 8069013 + MGP_C3HHeJ_P0095258 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0095259.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8015000 8067725 + Usp9x protein_coding retained_intron MGP_C3HHeJ_T0095260.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8015000 8119409 + MGP_C3HHeJ_P0095260 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0095261.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8015669 8135755 + MGP_C3HHeJ_P0095261 Usp9x protein_coding unknown_likely_coding MGP_C3HHeJ_T0095262.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8059247 8068797 + MGP_C3HHeJ_P0095262 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0095263.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8074584 8078095 + Usp9x protein_coding retained_intron MGP_C3HHeJ_T0095264.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8074851 8079307 + Usp9x protein_coding retained_intron MGP_C3HHeJ_T0095265.1 MGP_C3HHeJ_G0035257.1 mouse_genomes_project X 8106938 8115979 + MGP_C3HHeJ_P0095265 Usp9x protein_coding protein_coding MGP_C3HHeJ_T0099777.1 MGP_C3HHeJ_G0037971.1 mouse_genomes_project X 89603217 89603322 + Gm25332 snRNA snRNA MGP_C3HHeJ_T0097136.1 MGP_C3HHeJ_G0035810.1 mouse_genomes_project X 137891775 137991543 + MGP_C3HHeJ_P0097136 Frmpd3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097137.1 MGP_C3HHeJ_G0035810.1 mouse_genomes_project X 137921628 137948022 + MGP_C3HHeJ_P0097137 Frmpd3 protein_coding protein_coding MGP_C3HHeJ_T0097138.1 MGP_C3HHeJ_G0035810.1 mouse_genomes_project X 137936104 137948667 + MGP_C3HHeJ_P0097138 Frmpd3 protein_coding protein_coding MGP_C3HHeJ_T0101068.1 MGP_C3HHeJ_G0039262.1 mouse_genomes_project X 161137453 161137574 + Gm23786 snoRNA snoRNA MGP_C3HHeJ_T0016299.1 MGP_C3HHeJ_G0014403.1 mouse_genomes_project X 89318988 89320548 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095807.1 MGP_C3HHeJ_G0035443.1 mouse_genomes_project X 63723573 63734727 + MGP_C3HHeJ_P0095807 protein_coding protein_coding MGP_C3HHeJ_T0095584.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543651 43571888 + MGP_C3HHeJ_P0095584 Xpnpep2 protein_coding protein_coding MGP_C3HHeJ_T0095585.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543845 43568936 + MGP_C3HHeJ_P0095585 Xpnpep2 protein_coding protein_coding MGP_C3HHeJ_T0095586.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543847 43547082 + Xpnpep2 protein_coding processed_transcript MGP_C3HHeJ_T0095587.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43543855 43571577 + MGP_C3HHeJ_P0095587 Xpnpep2 protein_coding protein_coding MGP_C3HHeJ_T0095588.1 MGP_C3HHeJ_G0035360.1 mouse_genomes_project X 43562662 43566072 + Xpnpep2 protein_coding processed_transcript MGP_C3HHeJ_T0095381.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16150496 16184071 - MGP_C3HHeJ_P0095381 Zfp182 protein_coding protein_coding MGP_C3HHeJ_T0095382.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16150500 16184120 - MGP_C3HHeJ_P0095382 Zfp182 protein_coding protein_coding MGP_C3HHeJ_T0095383.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16151146 16184054 - MGP_C3HHeJ_P0095383 Zfp182 protein_coding protein_coding MGP_C3HHeJ_T0095384.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16153146 16184384 - Zfp182 protein_coding processed_transcript MGP_C3HHeJ_T0095385.1 MGP_C3HHeJ_G0035291.1 mouse_genomes_project X 16179745 16184111 - Zfp182 protein_coding processed_transcript MGP_C3HHeJ_T0016076.1 MGP_C3HHeJ_G0014180.1 mouse_genomes_project X 37509794 37514040 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097640.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164684845 164835264 + MGP_C3HHeJ_P0097640 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097641.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164684906 164835264 + MGP_C3HHeJ_P0097641 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097642.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164684906 164835264 + MGP_C3HHeJ_P0097642 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097643.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164830277 + MGP_C3HHeJ_P0097643 Gpm6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097644.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097644 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097645.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097645 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097646.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097646 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097647.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097647 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097648.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164830277 + MGP_C3HHeJ_P0097648 Gpm6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097649.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097649 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097650.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791034 164835264 + MGP_C3HHeJ_P0097650 Gpm6b protein_coding protein_coding MGP_C3HHeJ_T0097651.1 MGP_C3HHeJ_G0035934.1 mouse_genomes_project X 164791184 164819548 + Gpm6b protein_coding retained_intron MGP_C3HHeJ_T0016077.1 MGP_C3HHeJ_G0014181.1 mouse_genomes_project X 37725698 37725866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097703.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168226945 168544232 + MGP_C3HHeJ_P0097703 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097704.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168226945 168544232 + MGP_C3HHeJ_P0097704 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097708.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168378426 168544232 + MGP_C3HHeJ_P0097708 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097709.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168430204 168544232 + MGP_C3HHeJ_P0097709 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097710.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168430246 168544050 + MGP_C3HHeJ_P0097710 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097711.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168479794 168544232 + MGP_C3HHeJ_P0097711 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097712.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168479794 168543114 + MGP_C3HHeJ_P0097712 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0097713.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168480318 168529088 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097714.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168526713 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097715.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168526713 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097716.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097717.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537201 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097718.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097719.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168529087 168537200 + Mid1 protein_coding processed_transcript MGP_C3HHeJ_T0097721.1 MGP_C3HHeJ_G0035949.1 mouse_genomes_project X 168533462 168544232 + MGP_C3HHeJ_P0097721 Mid1 protein_coding protein_coding MGP_C3HHeJ_T0016408.1 MGP_C3HHeJ_G0014512.1 mouse_genomes_project X 106200226 106200382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102367.1 MGP_C3HHeJ_G0040330.1 mouse_genomes_project X 132553722 132557084 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016338.1 MGP_C3HHeJ_G0014442.1 mouse_genomes_project X 95931813 95932815 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016677.1 MGP_C3HHeJ_G0014781.1 mouse_genomes_project X 162406843 162407019 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015973.1 MGP_C3HHeJ_G0014077.1 mouse_genomes_project X 2626857 2627570 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009346.1 MGP_C3HHeJ_G0007489.1 mouse_genomes_project X 148777011 148777552 - Gm27191 lincRNA lincRNA MGP_C3HHeJ_T0099810.1 MGP_C3HHeJ_G0038004.1 mouse_genomes_project X 155298780 155298944 + Gm22666 snRNA snRNA MGP_C3HHeJ_T0016507.1 MGP_C3HHeJ_G0014611.1 mouse_genomes_project X 132111618 132112480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016640.1 MGP_C3HHeJ_G0014744.1 mouse_genomes_project X 155869443 155869876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016045.1 MGP_C3HHeJ_G0014149.1 mouse_genomes_project X 17585858 17586342 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011102.1 MGP_C3HHeJ_G0009235.1 mouse_genomes_project X 98965094 98965198 - Gm27843 miRNA miRNA MGP_C3HHeJ_T0005524.1 MGP_C3HHeJ_G0004648.1 mouse_genomes_project X 92322175 92421223 + antisense antisense MGP_C3HHeJ_T0101065.1 MGP_C3HHeJ_G0039259.1 mouse_genomes_project X 155543574 155543706 - Gm25795 snoRNA snoRNA MGP_C3HHeJ_T0011137.1 MGP_C3HHeJ_G0009270.1 mouse_genomes_project X 165495748 165495857 - Gm22368 miRNA miRNA MGP_C3HHeJ_T0016311.1 MGP_C3HHeJ_G0014415.1 mouse_genomes_project X 91198194 91198812 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096068.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70286561 70349052 - MGP_C3HHeJ_P0096068 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096069.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70286797 70343416 - MGP_C3HHeJ_P0096069 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096070.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70295751 70349073 - MGP_C3HHeJ_P0096070 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096071.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70295752 70348995 - MGP_C3HHeJ_P0096071 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096072.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70296133 70348993 - MGP_C3HHeJ_P0096072 Mecp2 protein_coding protein_coding MGP_C3HHeJ_T0096073.1 MGP_C3HHeJ_G0035501.1 mouse_genomes_project X 70344415 70348980 - Mecp2 protein_coding retained_intron MGP_C3HHeJ_T0002442.1 MGP_C3HHeJ_G0002360.1 mouse_genomes_project X 100694547 100699329 - TEC TEC MGP_C3HHeJ_T0097595.1 MGP_C3HHeJ_G0035919.1 mouse_genomes_project X 162494379 162495804 - MGP_C3HHeJ_P0097595 Siah1b protein_coding protein_coding MGP_C3HHeJ_T0011117.1 MGP_C3HHeJ_G0009250.1 mouse_genomes_project X 133068390 133068444 + Mir7646 miRNA miRNA MGP_C3HHeJ_T0096221.1 MGP_C3HHeJ_G0035522.1 mouse_genomes_project X 70892616 70893564 + MGP_C3HHeJ_P0096221 Olfr1325 protein_coding protein_coding MGP_C3HHeJ_T0096983.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229255 132241998 - Nxf2 protein_coding retained_intron MGP_C3HHeJ_T0096984.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229257 132250725 - MGP_C3HHeJ_P0096984 Nxf2 protein_coding protein_coding MGP_C3HHeJ_T0096985.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229257 132250725 - MGP_C3HHeJ_P0096985 Nxf2 protein_coding protein_coding MGP_C3HHeJ_T0096986.1 MGP_C3HHeJ_G0035755.1 mouse_genomes_project X 132229257 132249867 - MGP_C3HHeJ_P0096986 Nxf2 protein_coding protein_coding MGP_C3HHeJ_T0101037.1 MGP_C3HHeJ_G0039231.1 mouse_genomes_project X 89980575 89980708 + Gm23454 snoRNA snoRNA MGP_C3HHeJ_T0016531.1 MGP_C3HHeJ_G0014635.1 mouse_genomes_project X 134642038 134642782 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016361.1 MGP_C3HHeJ_G0014465.1 mouse_genomes_project X 100394641 100400110 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101024.1 MGP_C3HHeJ_G0039218.1 mouse_genomes_project X 64571110 64571236 + Gm22332 snoRNA snoRNA MGP_C3HHeJ_T0016581.1 MGP_C3HHeJ_G0014685.1 mouse_genomes_project X 142907195 142907829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016572.1 MGP_C3HHeJ_G0014676.1 mouse_genomes_project X 141879900 141880723 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016184.1 MGP_C3HHeJ_G0014288.1 mouse_genomes_project X 64513813 64514819 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016321.1 MGP_C3HHeJ_G0014425.1 mouse_genomes_project X 92047153 92049138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011090.1 MGP_C3HHeJ_G0009223.1 mouse_genomes_project X 69183376 69183442 + Mir2137 miRNA miRNA MGP_C3HHeJ_T0096040.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70201431 70224982 - MGP_C3HHeJ_P0096040 Hcfc1 protein_coding protein_coding MGP_C3HHeJ_T0096041.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70201434 70207890 - MGP_C3HHeJ_P0096041 Hcfc1 protein_coding protein_coding MGP_C3HHeJ_T0096042.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70201436 70224976 - MGP_C3HHeJ_P0096042 Hcfc1 protein_coding protein_coding MGP_C3HHeJ_T0096043.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70203960 70206072 - Hcfc1 protein_coding retained_intron MGP_C3HHeJ_T0096044.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70205834 70206986 - Hcfc1 protein_coding processed_transcript MGP_C3HHeJ_T0096045.1 MGP_C3HHeJ_G0035499.1 mouse_genomes_project X 70213755 70216064 - Hcfc1 protein_coding processed_transcript MGP_C3HHeJ_T0016325.1 MGP_C3HHeJ_G0014429.1 mouse_genomes_project X 93061977 93062415 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097241.1 MGP_C3HHeJ_G0035840.1 mouse_genomes_project X 145114476 145161401 - MGP_C3HHeJ_P0097241 Il13ra2 protein_coding protein_coding MGP_C3HHeJ_T0097242.1 MGP_C3HHeJ_G0035840.1 mouse_genomes_project X 145114478 145135763 - MGP_C3HHeJ_P0097242 Il13ra2 protein_coding protein_coding MGP_C3HHeJ_T0015966.1 MGP_C3HHeJ_G0014070.1 mouse_genomes_project X 2159393 2159807 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096476.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94193694 94239267 - MGP_C3HHeJ_P0096476 Eda2r protein_coding protein_coding MGP_C3HHeJ_T0096477.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94196991 94239201 - MGP_C3HHeJ_P0096477 Eda2r protein_coding protein_coding MGP_C3HHeJ_T0096478.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94197644 94239267 - Eda2r protein_coding retained_intron MGP_C3HHeJ_T0096479.1 MGP_C3HHeJ_G0035607.1 mouse_genomes_project X 94200011 94239223 - Eda2r protein_coding retained_intron MGP_C3HHeJ_T0016238.1 MGP_C3HHeJ_G0014342.1 mouse_genomes_project X 74978025 74979009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016537.1 MGP_C3HHeJ_G0014641.1 mouse_genomes_project X 136704885 136705595 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016424.1 MGP_C3HHeJ_G0014528.1 mouse_genomes_project X 109952559 109954181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096198.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70672991 70715003 + MGP_C3HHeJ_P0096198 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096199.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70672992 70733184 + MGP_C3HHeJ_P0096199 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096200.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70672992 70733184 + MGP_C3HHeJ_P0096200 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096201.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70673028 70720898 + MGP_C3HHeJ_P0096201 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096204.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705543 70720960 + MGP_C3HHeJ_P0096204 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096205.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705613 70728147 + MGP_C3HHeJ_P0096205 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096206.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705621 70733184 + MGP_C3HHeJ_P0096206 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096207.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705621 70733260 + MGP_C3HHeJ_P0096207 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096208.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705642 70728506 + MGP_C3HHeJ_P0096208 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096209.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70705647 70713878 + MGP_C3HHeJ_P0096209 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096211.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70708911 70718180 + MGP_C3HHeJ_P0096211 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096212.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710290 70724367 + MGP_C3HHeJ_P0096212 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096213.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710324 70733184 + MGP_C3HHeJ_P0096213 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096214.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710680 70729692 + MGP_C3HHeJ_P0096214 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096215.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710713 70730926 + MGP_C3HHeJ_P0096215 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096216.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710731 70714365 + Ikbkg protein_coding retained_intron MGP_C3HHeJ_T0096217.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70710772 70724864 + MGP_C3HHeJ_P0096217 Ikbkg protein_coding protein_coding MGP_C3HHeJ_T0096218.1 MGP_C3HHeJ_G0035518.1 mouse_genomes_project X 70719896 70727629 + Ikbkg protein_coding processed_transcript MGP_C3HHeJ_T0016378.1 MGP_C3HHeJ_G0014482.1 mouse_genomes_project X 101538008 101538473 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102331.1 MGP_C3HHeJ_G0040294.1 mouse_genomes_project X 3114333 3402251 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016008.1 MGP_C3HHeJ_G0014112.1 mouse_genomes_project X 8457445 8457981 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011026.1 MGP_C3HHeJ_G0009159.1 mouse_genomes_project X 1876303 1876368 - Mir362 miRNA miRNA MGP_C3HHeJ_T0095958.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70023257 70027778 + Srpk3 protein_coding retained_intron MGP_C3HHeJ_T0095959.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70023257 70027778 + MGP_C3HHeJ_P0095959 Srpk3 protein_coding protein_coding MGP_C3HHeJ_T0095960.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70026797 70027455 + Srpk3 protein_coding retained_intron MGP_C3HHeJ_T0095961.1 MGP_C3HHeJ_G0035490.1 mouse_genomes_project X 70026830 70027581 + Srpk3 protein_coding retained_intron MGP_C3HHeJ_T0016286.1 MGP_C3HHeJ_G0014390.1 mouse_genomes_project X 87268305 87268822 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096074.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70391920 70416138 + MGP_C3HHeJ_P0096074 Opn1mw protein_coding protein_coding MGP_C3HHeJ_T0096075.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70391922 70416129 + MGP_C3HHeJ_P0096075 Opn1mw protein_coding protein_coding MGP_C3HHeJ_T0096076.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70391937 70408931 + Opn1mw protein_coding processed_transcript MGP_C3HHeJ_T0096077.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70403332 70416134 + Opn1mw protein_coding processed_transcript MGP_C3HHeJ_T0096078.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70403353 70405296 + Opn1mw protein_coding processed_transcript MGP_C3HHeJ_T0096079.1 MGP_C3HHeJ_G0035502.1 mouse_genomes_project X 70403850 70416134 + MGP_C3HHeJ_P0096079 Opn1mw protein_coding protein_coding MGP_C3HHeJ_T0016079.1 MGP_C3HHeJ_G0014183.1 mouse_genomes_project X 38804538 38805196 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096849.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110229886 110377481 - MGP_C3HHeJ_P0096849 Chm protein_coding protein_coding MGP_C3HHeJ_T0096850.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110232467 110236863 - Chm protein_coding processed_transcript MGP_C3HHeJ_T0096851.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110251804 110371396 - Chm protein_coding processed_transcript MGP_C3HHeJ_T0096852.1 MGP_C3HHeJ_G0035713.1 mouse_genomes_project X 110313273 110371396 - Chm protein_coding processed_transcript MGP_C3HHeJ_T0016556.1 MGP_C3HHeJ_G0014660.1 mouse_genomes_project X 139481257 139481530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096293.1 MGP_C3HHeJ_G0035547.1 mouse_genomes_project X 72962595 72982990 - MGP_C3HHeJ_P0096293 Cldn34d protein_coding protein_coding MGP_C3HHeJ_T0095642.1 MGP_C3HHeJ_G0035376.1 mouse_genomes_project X 45162373 45163333 - MGP_C3HHeJ_P0095642 Olfr1321 protein_coding protein_coding MGP_C3HHeJ_T0005505.1 MGP_C3HHeJ_G0004631.1 mouse_genomes_project X 41690130 41750708 - 4930515L19Rik antisense antisense MGP_C3HHeJ_T0016089.1 MGP_C3HHeJ_G0014193.1 mouse_genomes_project X 40959468 40961918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098225.1 MGP_C3HHeJ_G0036437.1 mouse_genomes_project X 79671546 79671663 + n-R5s9 rRNA rRNA MGP_C3HHeJ_T0096357.1 MGP_C3HHeJ_G0035566.1 mouse_genomes_project X 82253722 82275307 + MGP_C3HHeJ_P0096357 5430427O19Rik protein_coding protein_coding MGP_C3HHeJ_T0016273.1 MGP_C3HHeJ_G0014377.1 mouse_genomes_project X 85135190 85135448 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097423.1 MGP_C3HHeJ_G0035876.1 mouse_genomes_project X 152521416 152525356 + MGP_C3HHeJ_P0097423 protein_coding protein_coding MGP_C3HHeJ_T0096653.1 MGP_C3HHeJ_G0035647.1 mouse_genomes_project X 99074934 99083157 + MGP_C3HHeJ_P0096653 Pin4 protein_coding protein_coding MGP_C3HHeJ_T0096654.1 MGP_C3HHeJ_G0035647.1 mouse_genomes_project X 99075056 99083154 + Pin4 protein_coding processed_transcript MGP_C3HHeJ_T0016324.1 MGP_C3HHeJ_G0014428.1 mouse_genomes_project X 92226881 92228995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098219.1 MGP_C3HHeJ_G0036431.1 mouse_genomes_project X 13354115 13354234 - n-R5s5 rRNA rRNA MGP_C3HHeJ_T0016600.1 MGP_C3HHeJ_G0014704.1 mouse_genomes_project X 148612727 148613377 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016236.1 MGP_C3HHeJ_G0014340.1 mouse_genomes_project X 74940102 74940474 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016143.1 MGP_C3HHeJ_G0014247.1 mouse_genomes_project X 56470289 56471120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005518.1 MGP_C3HHeJ_G0004642.1 mouse_genomes_project X 69627944 69638259 - Gm26726 antisense antisense MGP_C3HHeJ_T0097544.1 MGP_C3HHeJ_G0035906.1 mouse_genomes_project X 160068162 160133928 + MGP_C3HHeJ_P0097544 Rai2 protein_coding protein_coding MGP_C3HHeJ_T0097545.1 MGP_C3HHeJ_G0035906.1 mouse_genomes_project X 160068720 160133930 + MGP_C3HHeJ_P0097545 Rai2 protein_coding protein_coding MGP_C3HHeJ_T0016567.1 MGP_C3HHeJ_G0014671.1 mouse_genomes_project X 140147816 140148248 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095299.1 MGP_C3HHeJ_G0035270.1 mouse_genomes_project X 12540472 12554267 - Fundc1 protein_coding processed_transcript MGP_C3HHeJ_T0095300.1 MGP_C3HHeJ_G0035270.1 mouse_genomes_project X 12540472 12554896 - MGP_C3HHeJ_P0095300 Fundc1 protein_coding protein_coding MGP_C3HHeJ_T0095301.1 MGP_C3HHeJ_G0035270.1 mouse_genomes_project X 12540508 12554942 - MGP_C3HHeJ_P0095301 Fundc1 protein_coding protein_coding MGP_C3HHeJ_T0099796.1 MGP_C3HHeJ_G0037990.1 mouse_genomes_project X 125043213 125043320 - Gm25061 snRNA snRNA MGP_C3HHeJ_T0099761.1 MGP_C3HHeJ_G0037955.1 mouse_genomes_project X 43753160 43753261 + Gm22612 snRNA snRNA MGP_C3HHeJ_T0016327.1 MGP_C3HHeJ_G0014431.1 mouse_genomes_project X 93401891 93403599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095809.1 MGP_C3HHeJ_G0035445.1 mouse_genomes_project X 64633526 64635344 + MGP_C3HHeJ_P0095809 protein_coding protein_coding MGP_C3HHeJ_T0096901.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131118844 131126205 - MGP_C3HHeJ_P0096901 Tspan6 protein_coding protein_coding MGP_C3HHeJ_T0096902.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131120477 131126070 - MGP_C3HHeJ_P0096902 Tspan6 protein_coding protein_coding MGP_C3HHeJ_T0096903.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131122296 131126070 - MGP_C3HHeJ_P0096903 Tspan6 protein_coding protein_coding MGP_C3HHeJ_T0096904.1 MGP_C3HHeJ_G0035734.1 mouse_genomes_project X 131124493 131125889 - Tspan6 protein_coding processed_transcript MGP_C3HHeJ_T0015969.1 MGP_C3HHeJ_G0014073.1 mouse_genomes_project X 2334900 2335304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016133.1 MGP_C3HHeJ_G0014237.1 mouse_genomes_project X 53637728 53638322 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005545.1 MGP_C3HHeJ_G0004662.1 mouse_genomes_project X 165842741 165845708 + Gm15239 antisense antisense MGP_C3HHeJ_T0096529.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496888 97509863 + MGP_C3HHeJ_P0096529 Arr3 protein_coding protein_coding MGP_C3HHeJ_T0096530.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496914 97505000 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096531.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496935 97504440 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096532.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496946 97505208 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096533.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97496953 97509863 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0096534.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97497038 97503310 + MGP_C3HHeJ_P0096534 Arr3 protein_coding protein_coding MGP_C3HHeJ_T0096535.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97498003 97509757 + MGP_C3HHeJ_P0096535 Arr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096536.1 MGP_C3HHeJ_G0035622.1 mouse_genomes_project X 97503204 97505807 + Arr3 protein_coding retained_intron MGP_C3HHeJ_T0016117.1 MGP_C3HHeJ_G0014221.1 mouse_genomes_project X 48357665 48359063 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011661.1 MGP_C3HHeJ_G0009794.1 mouse_genomes_project X 48806556 48806863 + Gm23718 misc_RNA misc_RNA MGP_C3HHeJ_T0016259.1 MGP_C3HHeJ_G0014363.1 mouse_genomes_project X 82094751 82095337 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096642.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98796388 98899023 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0096643.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98796388 99029883 + MGP_C3HHeJ_P0096643 Nhsl2 protein_coding protein_coding MGP_C3HHeJ_T0096644.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98796388 99046598 + MGP_C3HHeJ_P0096644 Nhsl2 protein_coding protein_coding MGP_C3HHeJ_T0096645.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98911184 99031488 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0096646.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 98955615 99031463 + MGP_C3HHeJ_P0096646 Nhsl2 protein_coding protein_coding MGP_C3HHeJ_T0096647.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 99004122 99025573 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0096651.1 MGP_C3HHeJ_G0035644.1 mouse_genomes_project X 99026548 99033907 + Nhsl2 protein_coding processed_transcript MGP_C3HHeJ_T0095456.1 MGP_C3HHeJ_G0035319.1 mouse_genomes_project X 32348654 32367505 - MGP_C3HHeJ_P0095456 Upf3b protein_coding protein_coding MGP_C3HHeJ_T0095457.1 MGP_C3HHeJ_G0035319.1 mouse_genomes_project X 32352652 32361876 - MGP_C3HHeJ_P0095457 Upf3b protein_coding protein_coding MGP_C3HHeJ_T0095458.1 MGP_C3HHeJ_G0035319.1 mouse_genomes_project X 32354426 32367505 - Upf3b protein_coding processed_transcript MGP_C3HHeJ_T0095310.1 MGP_C3HHeJ_G0035274.1 mouse_genomes_project X 14526846 14528702 - MGP_C3HHeJ_P0095310 BC049702 protein_coding protein_coding MGP_C3HHeJ_T0016525.1 MGP_C3HHeJ_G0014629.1 mouse_genomes_project X 134397012 134398134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095631.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44458907 44649569 - MGP_C3HHeJ_P0095631 Enox2 protein_coding protein_coding MGP_C3HHeJ_T0095632.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44515855 44743645 - Enox2 protein_coding processed_transcript MGP_C3HHeJ_T0095633.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44519071 44743598 - Enox2 protein_coding processed_transcript MGP_C3HHeJ_T0095634.1 MGP_C3HHeJ_G0035373.1 mouse_genomes_project X 44523370 44743628 - Enox2 protein_coding processed_transcript MGP_C3HHeJ_T0011045.1 MGP_C3HHeJ_G0009178.1 mouse_genomes_project X 46653590 46653670 - Gm25241 miRNA miRNA MGP_C3HHeJ_T0101029.1 MGP_C3HHeJ_G0039223.1 mouse_genomes_project X 70544021 70544158 + Snora70 snoRNA snoRNA MGP_C3HHeJ_T0097283.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567073 148579745 - MGP_C3HHeJ_P0097283 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097284.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567634 148580009 - MGP_C3HHeJ_P0097284 protein_coding protein_coding MGP_C3HHeJ_T0097285.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567634 148580046 - MGP_C3HHeJ_P0097285 protein_coding protein_coding MGP_C3HHeJ_T0097286.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148567752 148578057 - MGP_C3HHeJ_P0097286 protein_coding protein_coding MGP_C3HHeJ_T0097287.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148571398 148573758 - protein_coding retained_intron MGP_C3HHeJ_T0097288.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148571551 148580009 - MGP_C3HHeJ_P0097288 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097289.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148571675 148573807 - protein_coding retained_intron MGP_C3HHeJ_T0097290.1 MGP_C3HHeJ_G0035846.1 mouse_genomes_project X 148573391 148574934 - protein_coding retained_intron MGP_C3HHeJ_T0009366.1 MGP_C3HHeJ_G0007501.1 mouse_genomes_project X 167981670 168012407 + Gm15245 lincRNA lincRNA MGP_C3HHeJ_T0097425.1 MGP_C3HHeJ_G0035878.1 mouse_genomes_project X 152618818 152621499 + MGP_C3HHeJ_P0097425 Samt4 protein_coding protein_coding MGP_C3HHeJ_T0094994.1 MGP_C3HHeJ_G0035188.1 mouse_genomes_project X 1440281 1561792 + MGP_C3HHeJ_P0094994 Dgkk protein_coding protein_coding MGP_C3HHeJ_T0016087.1 MGP_C3HHeJ_G0014191.1 mouse_genomes_project X 40250425 40251395 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016019.1 MGP_C3HHeJ_G0014123.1 mouse_genomes_project X 12257389 12259722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016134.1 MGP_C3HHeJ_G0014238.1 mouse_genomes_project X 54077039 54077363 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009311.1 MGP_C3HHeJ_G0007468.1 mouse_genomes_project X 91606985 91611307 + Gm26617 lincRNA lincRNA MGP_C3HHeJ_T0016570.1 MGP_C3HHeJ_G0014674.1 mouse_genomes_project X 140820726 140821756 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016067.1 MGP_C3HHeJ_G0014171.1 mouse_genomes_project X 35389461 35390913 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016062.1 MGP_C3HHeJ_G0014166.1 mouse_genomes_project X 34818810 34819217 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016603.1 MGP_C3HHeJ_G0014707.1 mouse_genomes_project X 148940205 148940864 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102357.1 MGP_C3HHeJ_G0040320.1 mouse_genomes_project X 82749261 82750284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011076.1 MGP_C3HHeJ_G0009209.1 mouse_genomes_project X 62864960 62865038 - Mir881 miRNA miRNA MGP_C3HHeJ_T0095436.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32071265 32112495 - MGP_C3HHeJ_P0095436 C330007P06Rik protein_coding protein_coding MGP_C3HHeJ_T0095437.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32087121 32105283 - C330007P06Rik protein_coding retained_intron MGP_C3HHeJ_T0095438.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32096006 32112503 - MGP_C3HHeJ_P0095438 C330007P06Rik protein_coding protein_coding MGP_C3HHeJ_T0095439.1 MGP_C3HHeJ_G0035313.1 mouse_genomes_project X 32096013 32123586 - MGP_C3HHeJ_P0095439 C330007P06Rik protein_coding protein_coding MGP_C3HHeJ_T0096997.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132890277 132900477 - MGP_C3HHeJ_P0096997 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0096998.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132890277 132910269 - MGP_C3HHeJ_P0096998 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0096999.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132890485 132905378 - MGP_C3HHeJ_P0096999 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0097000.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132895102 132896856 - Nxf7 protein_coding retained_intron MGP_C3HHeJ_T0097001.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132899939 132910250 - MGP_C3HHeJ_P0097001 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0097002.1 MGP_C3HHeJ_G0035763.1 mouse_genomes_project X 132900122 132908200 - MGP_C3HHeJ_P0097002 Nxf7 protein_coding protein_coding MGP_C3HHeJ_T0095243.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095243 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095244.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095244 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095245.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095245 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095246.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948966 6993659 - MGP_C3HHeJ_P0095246 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095247.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6948969 7079076 - MGP_C3HHeJ_P0095247 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095248.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6972098 7044836 - MGP_C3HHeJ_P0095248 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095249.1 MGP_C3HHeJ_G0035253.1 mouse_genomes_project X 6972188 7044786 - MGP_C3HHeJ_P0095249 Bcor protein_coding protein_coding MGP_C3HHeJ_T0095200.1 MGP_C3HHeJ_G0035234.1 mouse_genomes_project X 3517853 3527156 + MGP_C3HHeJ_P0095200 protein_coding protein_coding MGP_C3HHeJ_T0097053.1 MGP_C3HHeJ_G0035785.1 mouse_genomes_project X 134314569 134325201 - MGP_C3HHeJ_P0097053 Rab9b protein_coding protein_coding MGP_C3HHeJ_T0101289.1 MGP_C3HHeJ_G0039388.1 mouse_genomes_project X 5290004 5291943 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101290.1 MGP_C3HHeJ_G0039388.1 mouse_genomes_project X 5291347 5291838 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0095804.1 MGP_C3HHeJ_G0035441.1 mouse_genomes_project X 62722969 62735003 + MGP_C3HHeJ_P0095804 Slitrk2 protein_coding protein_coding MGP_C3HHeJ_T0095805.1 MGP_C3HHeJ_G0035441.1 mouse_genomes_project X 62726634 62730116 + MGP_C3HHeJ_P0095805 Slitrk2 protein_coding protein_coding MGP_C3HHeJ_T0011101.1 MGP_C3HHeJ_G0009234.1 mouse_genomes_project X 97266797 97266886 + Mir676 miRNA miRNA MGP_C3HHeJ_T0016469.1 MGP_C3HHeJ_G0014573.1 mouse_genomes_project X 118595367 118596014 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096560.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971757 97978360 - Slc7a3 protein_coding retained_intron MGP_C3HHeJ_T0096561.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971769 97978307 - MGP_C3HHeJ_P0096561 Slc7a3 protein_coding protein_coding MGP_C3HHeJ_T0096562.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971770 97979066 - MGP_C3HHeJ_P0096562 Slc7a3 protein_coding protein_coding MGP_C3HHeJ_T0096563.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97971770 97978327 - MGP_C3HHeJ_P0096563 Slc7a3 protein_coding protein_coding MGP_C3HHeJ_T0096564.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97972354 97977135 - Slc7a3 protein_coding processed_transcript MGP_C3HHeJ_T0096565.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97974148 97974812 - Slc7a3 protein_coding retained_intron MGP_C3HHeJ_T0096566.1 MGP_C3HHeJ_G0035628.1 mouse_genomes_project X 97974336 97975038 - Slc7a3 protein_coding retained_intron MGP_C3HHeJ_T0096324.1 MGP_C3HHeJ_G0035559.1 mouse_genomes_project X 77386549 77411314 + Tmem47 protein_coding processed_transcript MGP_C3HHeJ_T0096325.1 MGP_C3HHeJ_G0035559.1 mouse_genomes_project X 77386556 77412269 + MGP_C3HHeJ_P0096325 Tmem47 protein_coding protein_coding MGP_C3HHeJ_T0096326.1 MGP_C3HHeJ_G0035559.1 mouse_genomes_project X 77386567 77414416 + MGP_C3HHeJ_P0096326 Tmem47 protein_coding protein_coding MGP_C3HHeJ_T0096390.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90710651 90718999 + MGP_C3HHeJ_P0096390 AU015836 protein_coding protein_coding MGP_C3HHeJ_T0096391.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90710666 90718999 + MGP_C3HHeJ_P0096391 AU015836 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096392.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90710674 90711651 + MGP_C3HHeJ_P0096392 AU015836 protein_coding protein_coding MGP_C3HHeJ_T0096393.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90711634 90714162 + AU015836 protein_coding processed_transcript MGP_C3HHeJ_T0096394.1 MGP_C3HHeJ_G0035585.1 mouse_genomes_project X 90711788 90718600 + MGP_C3HHeJ_P0096394 AU015836 protein_coding protein_coding MGP_C3HHeJ_T0097633.1 MGP_C3HHeJ_G0035930.1 mouse_genomes_project X 163421048 163437472 + MGP_C3HHeJ_P0097633 Fancb protein_coding protein_coding MGP_C3HHeJ_T0097634.1 MGP_C3HHeJ_G0035930.1 mouse_genomes_project X 163421048 163437472 + MGP_C3HHeJ_P0097634 Fancb protein_coding protein_coding MGP_C3HHeJ_T0097635.1 MGP_C3HHeJ_G0035930.1 mouse_genomes_project X 163421168 163437475 + MGP_C3HHeJ_P0097635 Fancb protein_coding protein_coding MGP_C3HHeJ_T0097359.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149962254 149964814 + MGP_C3HHeJ_P0097359 Hsd17b10 protein_coding protein_coding MGP_C3HHeJ_T0097360.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149962254 149964814 + MGP_C3HHeJ_P0097360 Hsd17b10 protein_coding protein_coding MGP_C3HHeJ_T0097361.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149962558 149964814 + Hsd17b10 protein_coding processed_transcript MGP_C3HHeJ_T0097362.1 MGP_C3HHeJ_G0035855.1 mouse_genomes_project X 149963768 149964814 + Hsd17b10 protein_coding retained_intron MGP_C3HHeJ_T0095909.1 MGP_C3HHeJ_G0035473.1 mouse_genomes_project X 69262930 69266436 + MGP_C3HHeJ_P0095909 Pnma3 protein_coding protein_coding MGP_C3HHeJ_T0016503.1 MGP_C3HHeJ_G0014607.1 mouse_genomes_project X 131957277 131957635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009339.1 MGP_C3HHeJ_G0007483.1 mouse_genomes_project X 126202430 126205280 + 4930558G05Rik lincRNA lincRNA MGP_C3HHeJ_T0098226.1 MGP_C3HHeJ_G0036438.1 mouse_genomes_project X 82813412 82813531 - n-R5s10 rRNA rRNA MGP_C3HHeJ_T0016223.1 MGP_C3HHeJ_G0014327.1 mouse_genomes_project X 73107743 73109695 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099783.1 MGP_C3HHeJ_G0037977.1 mouse_genomes_project X 101155476 101155583 - Gm23378 snRNA snRNA MGP_C3HHeJ_T0095869.1 MGP_C3HHeJ_G0035457.1 mouse_genomes_project X 67725703 67729849 + MGP_C3HHeJ_P0095869 Hmgb3 protein_coding protein_coding MGP_C3HHeJ_T0095870.1 MGP_C3HHeJ_G0035457.1 mouse_genomes_project X 67726990 67729318 + MGP_C3HHeJ_P0095870 Hmgb3 protein_coding protein_coding MGP_C3HHeJ_T0095871.1 MGP_C3HHeJ_G0035457.1 mouse_genomes_project X 67727827 67729317 + Hmgb3 protein_coding retained_intron MGP_C3HHeJ_T0099776.1 MGP_C3HHeJ_G0037970.1 mouse_genomes_project X 84637813 84637920 + Gm25006 snRNA snRNA MGP_C3HHeJ_T0011040.1 MGP_C3HHeJ_G0009173.1 mouse_genomes_project X 34090139 34090205 - Gm25642 miRNA miRNA MGP_C3HHeJ_T0096741.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103186816 103231339 - MGP_C3HHeJ_P0096741 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096742.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103186816 103231346 - MGP_C3HHeJ_P0096742 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096743.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103189210 103231226 - MGP_C3HHeJ_P0096743 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096744.1 MGP_C3HHeJ_G0035676.1 mouse_genomes_project X 103195428 103231220 - MGP_C3HHeJ_P0096744 Magt1 protein_coding protein_coding MGP_C3HHeJ_T0096152.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579135 70586152 + MGP_C3HHeJ_P0096152 Gdi1 protein_coding protein_coding MGP_C3HHeJ_T0096153.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579149 70586150 + Gdi1 protein_coding retained_intron MGP_C3HHeJ_T0096154.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579393 70581159 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0096155.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579404 70586148 + Gdi1 protein_coding retained_intron MGP_C3HHeJ_T0096156.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579450 70581296 + MGP_C3HHeJ_P0096156 Gdi1 protein_coding protein_coding MGP_C3HHeJ_T0096157.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70579945 70581337 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0096158.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70581300 70583849 + Gdi1 protein_coding retained_intron MGP_C3HHeJ_T0096159.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70583307 70585438 + MGP_C3HHeJ_P0096159 Gdi1 protein_coding protein_coding MGP_C3HHeJ_T0096160.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70584133 70585218 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0096161.1 MGP_C3HHeJ_G0035511.1 mouse_genomes_project X 70584662 70585315 + Gdi1 protein_coding processed_transcript MGP_C3HHeJ_T0016441.1 MGP_C3HHeJ_G0014545.1 mouse_genomes_project X 112605211 112606749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016212.1 MGP_C3HHeJ_G0014316.1 mouse_genomes_project X 71148832 71152821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011103.1 MGP_C3HHeJ_G0009236.1 mouse_genomes_project X 99219626 99219722 - Gm26318 miRNA miRNA MGP_C3HHeJ_T0097312.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149027741 149041878 - MGP_C3HHeJ_P0097312 Tsr2 protein_coding protein_coding MGP_C3HHeJ_T0097313.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149027742 149041878 - MGP_C3HHeJ_P0097313 Tsr2 protein_coding protein_coding MGP_C3HHeJ_T0097314.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149030128 149041878 - MGP_C3HHeJ_P0097314 Tsr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097315.1 MGP_C3HHeJ_G0035850.1 mouse_genomes_project X 149030339 149041858 - Tsr2 protein_coding processed_transcript MGP_C3HHeJ_T0101301.1 MGP_C3HHeJ_G0039395.1 mouse_genomes_project X 85467937 85468380 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101302.1 MGP_C3HHeJ_G0039395.1 mouse_genomes_project X 85467990 85468197 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101032.1 MGP_C3HHeJ_G0039226.1 mouse_genomes_project X 72237213 72237340 + Gm23320 snoRNA snoRNA MGP_C3HHeJ_T0016501.1 MGP_C3HHeJ_G0014605.1 mouse_genomes_project X 131277913 131279542 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096283.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132778 72225204 - MGP_C3HHeJ_P0096283 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096284.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132787 72224617 - MGP_C3HHeJ_P0096284 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096285.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132787 72176756 - MGP_C3HHeJ_P0096285 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096286.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72132792 72192862 - MGP_C3HHeJ_P0096286 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0096287.1 MGP_C3HHeJ_G0035542.1 mouse_genomes_project X 72133895 72192984 - MGP_C3HHeJ_P0096287 Pls3 protein_coding protein_coding MGP_C3HHeJ_T0016448.1 MGP_C3HHeJ_G0014552.1 mouse_genomes_project X 114454974 114455247 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016380.1 MGP_C3HHeJ_G0014484.1 mouse_genomes_project X 102148656 102149175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016404.1 MGP_C3HHeJ_G0014508.1 mouse_genomes_project X 104652824 104653851 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016598.1 MGP_C3HHeJ_G0014702.1 mouse_genomes_project X 148356139 148356418 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101045.1 MGP_C3HHeJ_G0039239.1 mouse_genomes_project X 118182303 118182431 + Gm22590 snoRNA snoRNA MGP_C3HHeJ_T0016554.1 MGP_C3HHeJ_G0014658.1 mouse_genomes_project X 139382060 139382543 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016558.1 MGP_C3HHeJ_G0014662.1 mouse_genomes_project X 139481260 139481527 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095627.1 MGP_C3HHeJ_G0035370.1 mouse_genomes_project X 44126758 44133203 - MGP_C3HHeJ_P0095627 Gpr119 protein_coding protein_coding MGP_C3HHeJ_T0096174.1 MGP_C3HHeJ_G0035514.1 mouse_genomes_project X 70627639 70629958 - MGP_C3HHeJ_P0096174 Lage3 protein_coding protein_coding MGP_C3HHeJ_T0096175.1 MGP_C3HHeJ_G0035514.1 mouse_genomes_project X 70628524 70629982 - MGP_C3HHeJ_P0096175 Lage3 protein_coding protein_coding MGP_C3HHeJ_T0096176.1 MGP_C3HHeJ_G0035514.1 mouse_genomes_project X 70628525 70629939 - MGP_C3HHeJ_P0096176 Lage3 protein_coding protein_coding MGP_C3HHeJ_T0095713.1 MGP_C3HHeJ_G0035408.1 mouse_genomes_project X 52346457 52347455 + MGP_C3HHeJ_P0095713 Gm10477 protein_coding protein_coding MGP_C3HHeJ_T0097324.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464062 149571921 + MGP_C3HHeJ_P0097324 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097325.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464062 149580941 + MGP_C3HHeJ_P0097325 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097326.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464062 149524564 + MGP_C3HHeJ_P0097326 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097327.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464559 149546422 + MGP_C3HHeJ_P0097327 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097328.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464571 149571921 + MGP_C3HHeJ_P0097328 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097329.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464577 149536069 + MGP_C3HHeJ_P0097329 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097330.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149464577 149580943 + MGP_C3HHeJ_P0097330 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097331.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149465750 149500661 + MGP_C3HHeJ_P0097331 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097332.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149503929 149506153 + Phf8 protein_coding retained_intron MGP_C3HHeJ_T0097333.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149519793 149529593 + MGP_C3HHeJ_P0097333 Phf8 protein_coding protein_coding MGP_C3HHeJ_T0097334.1 MGP_C3HHeJ_G0035853.1 mouse_genomes_project X 149576900 149580943 + Phf8 protein_coding retained_intron MGP_C3HHeJ_T0015976.1 MGP_C3HHeJ_G0014080.1 mouse_genomes_project X 2732204 2732633 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096800.1 MGP_C3HHeJ_G0035694.1 mouse_genomes_project X 105261081 105263783 - MGP_C3HHeJ_P0096800 Gm732 protein_coding protein_coding MGP_C3HHeJ_T0096801.1 MGP_C3HHeJ_G0035694.1 mouse_genomes_project X 105262222 105263812 - MGP_C3HHeJ_P0096801 Gm732 protein_coding protein_coding MGP_C3HHeJ_T0016152.1 MGP_C3HHeJ_G0014256.1 mouse_genomes_project X 57334507 57335064 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016270.1 MGP_C3HHeJ_G0014374.1 mouse_genomes_project X 84839702 84840013 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016588.1 MGP_C3HHeJ_G0014692.1 mouse_genomes_project X 143697459 143698294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097089.1 MGP_C3HHeJ_G0035796.1 mouse_genomes_project X 136602589 136609748 + MGP_C3HHeJ_P0097089 4930513O06Rik protein_coding protein_coding MGP_C3HHeJ_T0016107.1 MGP_C3HHeJ_G0014211.1 mouse_genomes_project X 46646991 46647428 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016183.1 MGP_C3HHeJ_G0014287.1 mouse_genomes_project X 64346766 64347379 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095790.1 MGP_C3HHeJ_G0035431.1 mouse_genomes_project X 57152834 57155129 - MGP_C3HHeJ_P0095790 Cdr1 protein_coding protein_coding MGP_C3HHeJ_T0016304.1 MGP_C3HHeJ_G0014408.1 mouse_genomes_project X 90724541 90726075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096142.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571294 70578859 + MGP_C3HHeJ_P0096142 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096143.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571340 70576512 + MGP_C3HHeJ_P0096143 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096144.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571359 70577568 + MGP_C3HHeJ_P0096144 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096145.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571360 70578827 + MGP_C3HHeJ_P0096145 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0096146.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571374 70575496 + Atp6ap1 protein_coding retained_intron MGP_C3HHeJ_T0096147.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571430 70577601 + MGP_C3HHeJ_P0096147 Atp6ap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096148.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70571459 70576652 + MGP_C3HHeJ_P0096148 Atp6ap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0096149.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70576061 70577371 + Atp6ap1 protein_coding processed_transcript MGP_C3HHeJ_T0096150.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70576690 70578151 + Atp6ap1 protein_coding retained_intron MGP_C3HHeJ_T0096151.1 MGP_C3HHeJ_G0035510.1 mouse_genomes_project X 70577626 70578153 + MGP_C3HHeJ_P0096151 Atp6ap1 protein_coding protein_coding MGP_C3HHeJ_T0095738.1 MGP_C3HHeJ_G0035415.1 mouse_genomes_project X 52887303 52892988 + MGP_C3HHeJ_P0095738 Brs3 protein_coding protein_coding MGP_C3HHeJ_T0016054.1 MGP_C3HHeJ_G0014158.1 mouse_genomes_project X 32086600 32086757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102362.1 MGP_C3HHeJ_G0040325.1 mouse_genomes_project X 88805528 88806572 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016586.1 MGP_C3HHeJ_G0014690.1 mouse_genomes_project X 143520112 143520930 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095283.1 MGP_C3HHeJ_G0035261.1 mouse_genomes_project X 8600391 8609099 + MGP_C3HHeJ_P0095283 Gpr34 protein_coding protein_coding MGP_C3HHeJ_T0095284.1 MGP_C3HHeJ_G0035261.1 mouse_genomes_project X 8601071 8609101 + MGP_C3HHeJ_P0095284 Gpr34 protein_coding protein_coding MGP_C3HHeJ_T0098254.1 MGP_C3HHeJ_G0036466.1 mouse_genomes_project X 54972096 54972328 - Gm26351 ribozyme ribozyme MGP_C3HHeJ_T0016014.1 MGP_C3HHeJ_G0014118.1 mouse_genomes_project X 10543315 10543652 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011053.1 MGP_C3HHeJ_G0009186.1 mouse_genomes_project X 48220274 48220339 - Mir106a miRNA miRNA MGP_C3HHeJ_T0016169.1 MGP_C3HHeJ_G0014273.1 mouse_genomes_project X 60991457 60992819 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095508.1 MGP_C3HHeJ_G0035344.1 mouse_genomes_project X 35236842 35244186 - MGP_C3HHeJ_P0095508 Cypt14 protein_coding protein_coding MGP_C3HHeJ_T0016621.1 MGP_C3HHeJ_G0014725.1 mouse_genomes_project X 152925573 152926634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016519.1 MGP_C3HHeJ_G0014623.1 mouse_genomes_project X 133939334 133939779 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095397.1 MGP_C3HHeJ_G0035298.1 mouse_genomes_project X 16884909 16886567 - MGP_C3HHeJ_P0095397 Gm28269 protein_coding protein_coding MGP_C3HHeJ_T0096317.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75587573 75840940 - MGP_C3HHeJ_P0096317 protein_coding protein_coding MGP_C3HHeJ_T0096318.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75587628 75840839 - MGP_C3HHeJ_P0096318 protein_coding unknown_likely_coding MGP_C3HHeJ_T0096319.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75646839 75670385 - protein_coding retained_intron MGP_C3HHeJ_T0096320.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75646894 75678052 - MGP_C3HHeJ_P0096320 protein_coding protein_coding MGP_C3HHeJ_T0096321.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75665624 75678130 - protein_coding processed_transcript MGP_C3HHeJ_T0096322.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75721413 75751888 - MGP_C3HHeJ_P0096322 protein_coding protein_coding MGP_C3HHeJ_T0096323.1 MGP_C3HHeJ_G0035558.1 mouse_genomes_project X 75800917 75840839 - MGP_C3HHeJ_P0096323 protein_coding protein_coding MGP_C3HHeJ_T0097445.1 MGP_C3HHeJ_G0035885.1 mouse_genomes_project X 155411408 155656279 - MGP_C3HHeJ_P0097445 Phex protein_coding protein_coding MGP_C3HHeJ_T0097446.1 MGP_C3HHeJ_G0035885.1 mouse_genomes_project X 155467554 155656835 - MGP_C3HHeJ_P0097446 Phex protein_coding protein_coding MGP_C3HHeJ_T0095739.1 MGP_C3HHeJ_G0035416.1 mouse_genomes_project X 52897137 52900761 + MGP_C3HHeJ_P0095739 Htatsf1 protein_coding protein_coding MGP_C3HHeJ_T0095740.1 MGP_C3HHeJ_G0035416.1 mouse_genomes_project X 52897169 52910738 + MGP_C3HHeJ_P0095740 Htatsf1 protein_coding protein_coding MGP_C3HHeJ_T0095741.1 MGP_C3HHeJ_G0035416.1 mouse_genomes_project X 52897452 52900759 + Htatsf1 protein_coding retained_intron MGP_C3HHeJ_T0016095.1 MGP_C3HHeJ_G0014199.1 mouse_genomes_project X 42872606 42873611 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102352.1 MGP_C3HHeJ_G0040315.1 mouse_genomes_project X 74052791 74056869 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016283.1 MGP_C3HHeJ_G0014387.1 mouse_genomes_project X 85902798 85903519 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016659.1 MGP_C3HHeJ_G0014763.1 mouse_genomes_project X 158671769 158675366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009356.1 MGP_C3HHeJ_G0007493.1 mouse_genomes_project X 160172840 160174694 - Scml1 lincRNA lincRNA MGP_C3HHeJ_T0016612.1 MGP_C3HHeJ_G0014716.1 mouse_genomes_project X 150931165 150934571 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097553.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161150789 161166199 + MGP_C3HHeJ_P0097553 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0097554.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161151019 161169957 + MGP_C3HHeJ_P0097554 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0097555.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161151394 161162534 + MGP_C3HHeJ_P0097555 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0097556.1 MGP_C3HHeJ_G0035909.1 mouse_genomes_project X 161164881 161168569 + MGP_C3HHeJ_P0097556 Rbbp7 protein_coding protein_coding MGP_C3HHeJ_T0016083.1 MGP_C3HHeJ_G0014187.1 mouse_genomes_project X 39214135 39214770 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016178.1 MGP_C3HHeJ_G0014282.1 mouse_genomes_project X 63231318 63231936 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095694.1 MGP_C3HHeJ_G0035396.1 mouse_genomes_project X 48850253 48875155 - MGP_C3HHeJ_P0095694 Mospd1 protein_coding protein_coding MGP_C3HHeJ_T0016005.1 MGP_C3HHeJ_G0014109.1 mouse_genomes_project X 8260738 8260919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016624.1 MGP_C3HHeJ_G0014728.1 mouse_genomes_project X 153369880 153372683 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097228.1 MGP_C3HHeJ_G0035836.1 mouse_genomes_project X 142367187 142798259 + MGP_C3HHeJ_P0097228 Zcchc16 protein_coding protein_coding MGP_C3HHeJ_T0097229.1 MGP_C3HHeJ_G0035836.1 mouse_genomes_project X 142795348 142797106 + MGP_C3HHeJ_P0097229 Zcchc16 protein_coding protein_coding MGP_C3HHeJ_T0011677.1 MGP_C3HHeJ_G0009810.1 mouse_genomes_project X 124513578 124513853 + Gm22636 misc_RNA misc_RNA MGP_C3HHeJ_T0016186.1 MGP_C3HHeJ_G0014290.1 mouse_genomes_project X 64633483 64634741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095916.1 MGP_C3HHeJ_G0035479.1 mouse_genomes_project X 69637918 69654831 + MGP_C3HHeJ_P0095916 Zfp92 protein_coding protein_coding MGP_C3HHeJ_T0095917.1 MGP_C3HHeJ_G0035479.1 mouse_genomes_project X 69638382 69656218 + MGP_C3HHeJ_P0095917 Zfp92 protein_coding protein_coding MGP_C3HHeJ_T0097424.1 MGP_C3HHeJ_G0035877.1 mouse_genomes_project X 152521416 152525358 + MGP_C3HHeJ_P0097424 protein_coding protein_coding MGP_C3HHeJ_T0016199.1 MGP_C3HHeJ_G0014303.1 mouse_genomes_project X 67910156 67910371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101315.1 MGP_C3HHeJ_G0039404.1 mouse_genomes_project X 148139460 148140430 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011099.1 MGP_C3HHeJ_G0009232.1 mouse_genomes_project X 93112271 93112381 + Mir223 miRNA miRNA MGP_C3HHeJ_T0098229.1 MGP_C3HHeJ_G0036441.1 mouse_genomes_project X 149733555 149733674 + n-R5s13 rRNA rRNA MGP_C3HHeJ_T0016058.1 MGP_C3HHeJ_G0014162.1 mouse_genomes_project X 34244348 34245906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016414.1 MGP_C3HHeJ_G0014518.1 mouse_genomes_project X 107903476 107906105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097486.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157825195 157853098 + MGP_C3HHeJ_P0097486 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097487.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157832649 157895619 + MGP_C3HHeJ_P0097487 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097488.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157832797 157895606 + MGP_C3HHeJ_P0097488 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097489.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157841725 157853148 + MGP_C3HHeJ_P0097489 A830080D01Rik protein_coding protein_coding MGP_C3HHeJ_T0097490.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157868932 157894740 + A830080D01Rik protein_coding processed_transcript MGP_C3HHeJ_T0097491.1 MGP_C3HHeJ_G0035895.1 mouse_genomes_project X 157869621 157877181 + A830080D01Rik protein_coding retained_intron MGP_C3HHeJ_T0095289.1 MGP_C3HHeJ_G0035264.1 mouse_genomes_project X 11514620 11515441 + MGP_C3HHeJ_P0095289 Cypt1 protein_coding protein_coding MGP_C3HHeJ_T0095290.1 MGP_C3HHeJ_G0035264.1 mouse_genomes_project X 11514623 11515440 + MGP_C3HHeJ_P0095290 Cypt1 protein_coding protein_coding MGP_C3HHeJ_T0097080.1 MGP_C3HHeJ_G0035793.1 mouse_genomes_project X 135690131 135691547 - MGP_C3HHeJ_P0097080 Tex13a protein_coding protein_coding MGP_C3HHeJ_T0016479.1 MGP_C3HHeJ_G0014583.1 mouse_genomes_project X 124090852 124091107 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011023.1 MGP_C3HHeJ_G0009156.1 mouse_genomes_project X 688028 688108 + Gm27907 miRNA miRNA MGP_C3HHeJ_T0099782.1 MGP_C3HHeJ_G0037976.1 mouse_genomes_project X 98861347 98861442 - Gm25828 snRNA snRNA MGP_C3HHeJ_T0016336.1 MGP_C3HHeJ_G0014440.1 mouse_genomes_project X 95373994 95374480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009359.1 MGP_C3HHeJ_G0007496.1 mouse_genomes_project X 165116628 165144513 + Gm1720 lincRNA lincRNA MGP_C3HHeJ_T0016634.1 MGP_C3HHeJ_G0014738.1 mouse_genomes_project X 155250416 155251718 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016611.1 MGP_C3HHeJ_G0014715.1 mouse_genomes_project X 150571542 150572068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097141.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138104955 138108096 - Tsc22d3 protein_coding processed_transcript MGP_C3HHeJ_T0097142.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138104955 138108615 - MGP_C3HHeJ_P0097142 Tsc22d3 protein_coding protein_coding MGP_C3HHeJ_T0097143.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138104964 138108529 - Tsc22d3 protein_coding retained_intron MGP_C3HHeJ_T0097144.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138105689 138172518 - MGP_C3HHeJ_P0097144 Tsc22d3 protein_coding protein_coding MGP_C3HHeJ_T0097145.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138105778 138115047 - MGP_C3HHeJ_P0097145 Tsc22d3 protein_coding protein_coding MGP_C3HHeJ_T0097146.1 MGP_C3HHeJ_G0035812.1 mouse_genomes_project X 138108530 138115238 - Tsc22d3 protein_coding processed_transcript MGP_C3HHeJ_T0102334.1 MGP_C3HHeJ_G0040297.1 mouse_genomes_project X 4146190 4146444 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0095367.1 MGP_C3HHeJ_G0035286.1 mouse_genomes_project X 15979296 16041557 - MGP_C3HHeJ_P0095367 Syn1 protein_coding protein_coding MGP_C3HHeJ_T0095368.1 MGP_C3HHeJ_G0035286.1 mouse_genomes_project X 15979300 16041471 - MGP_C3HHeJ_P0095368 Syn1 protein_coding protein_coding MGP_C3HHeJ_T0016301.1 MGP_C3HHeJ_G0014405.1 mouse_genomes_project X 90374753 90375024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097322.1 MGP_C3HHeJ_G0035852.1 mouse_genomes_project X 149293392 149418103 + Fam120c protein_coding retained_intron MGP_C3HHeJ_T0097323.1 MGP_C3HHeJ_G0035852.1 mouse_genomes_project X 149293392 149418103 + MGP_C3HHeJ_P0097323 Fam120c protein_coding protein_coding MGP_C3HHeJ_T0016224.1 MGP_C3HHeJ_G0014328.1 mouse_genomes_project X 73225571 73225826 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016592.1 MGP_C3HHeJ_G0014696.1 mouse_genomes_project X 144224529 144225003 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011054.1 MGP_C3HHeJ_G0009187.1 mouse_genomes_project X 48542413 48542495 - Mir450b miRNA miRNA MGP_C3HHeJ_T0016003.1 MGP_C3HHeJ_G0014107.1 mouse_genomes_project X 7882460 7882817 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016271.1 MGP_C3HHeJ_G0014375.1 mouse_genomes_project X 85024787 85026495 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096444.1 MGP_C3HHeJ_G0035597.1 mouse_genomes_project X 92506921 92526770 - MGP_C3HHeJ_P0096444 Zc4h2 protein_coding protein_coding MGP_C3HHeJ_T0096445.1 MGP_C3HHeJ_G0035597.1 mouse_genomes_project X 92506924 92526745 - MGP_C3HHeJ_P0096445 Zc4h2 protein_coding protein_coding MGP_C3HHeJ_T0096446.1 MGP_C3HHeJ_G0035597.1 mouse_genomes_project X 92506927 92526871 - MGP_C3HHeJ_P0096446 Zc4h2 protein_coding protein_coding MGP_C3HHeJ_T0016197.1 MGP_C3HHeJ_G0014301.1 mouse_genomes_project X 67098862 67099493 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016513.1 MGP_C3HHeJ_G0014617.1 mouse_genomes_project X 133490378 133490735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016279.1 MGP_C3HHeJ_G0014383.1 mouse_genomes_project X 85545653 85546612 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011034.1 MGP_C3HHeJ_G0009167.1 mouse_genomes_project X 14200687 14200766 - Mir222 miRNA miRNA MGP_C3HHeJ_T0095062.1 MGP_C3HHeJ_G0035203.1 mouse_genomes_project X 2389523 2392897 + MGP_C3HHeJ_P0095062 Praf2 protein_coding protein_coding MGP_C3HHeJ_T0095913.1 MGP_C3HHeJ_G0035477.1 mouse_genomes_project X 69442218 69444723 + MGP_C3HHeJ_P0095913 F8a protein_coding protein_coding MGP_C3HHeJ_T0096595.1 MGP_C3HHeJ_G0035636.1 mouse_genomes_project X 98287337 98296589 + MGP_C3HHeJ_P0096595 Gjb1 protein_coding protein_coding MGP_C3HHeJ_T0096596.1 MGP_C3HHeJ_G0035636.1 mouse_genomes_project X 98288232 98296589 + MGP_C3HHeJ_P0096596 Gjb1 protein_coding protein_coding MGP_C3HHeJ_T0096597.1 MGP_C3HHeJ_G0035636.1 mouse_genomes_project X 98294695 98296589 + MGP_C3HHeJ_P0096597 Gjb1 protein_coding protein_coding MGP_C3HHeJ_T0016602.1 MGP_C3HHeJ_G0014706.1 mouse_genomes_project X 148859070 148860610 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016192.1 MGP_C3HHeJ_G0014296.1 mouse_genomes_project X 66508174 66508699 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016683.1 MGP_C3HHeJ_G0014787.1 mouse_genomes_project X 164649447 164649846 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016296.1 MGP_C3HHeJ_G0014400.1 mouse_genomes_project X 88704429 88705092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016374.1 MGP_C3HHeJ_G0014478.1 mouse_genomes_project X 100916532 100916840 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011116.1 MGP_C3HHeJ_G0009249.1 mouse_genomes_project X 132036313 132036414 + Mir7093 miRNA miRNA MGP_C3HHeJ_T0095797.1 MGP_C3HHeJ_G0035437.1 mouse_genomes_project X 60310993 60316224 + MGP_C3HHeJ_P0095797 3830417A13Rik protein_coding protein_coding MGP_C3HHeJ_T0095798.1 MGP_C3HHeJ_G0035437.1 mouse_genomes_project X 60311793 60314953 + MGP_C3HHeJ_P0095798 3830417A13Rik protein_coding protein_coding MGP_C3HHeJ_T0095429.1 MGP_C3HHeJ_G0035309.1 mouse_genomes_project X 31824421 31835021 + MGP_C3HHeJ_P0095429 Pgrmc1 protein_coding protein_coding MGP_C3HHeJ_T0095507.1 MGP_C3HHeJ_G0035343.1 mouse_genomes_project X 35236837 35244185 - MGP_C3HHeJ_P0095507 Cypt15 protein_coding protein_coding MGP_C3HHeJ_T0101058.1 MGP_C3HHeJ_G0039252.1 mouse_genomes_project X 141049419 141049548 + Gm23325 snoRNA snoRNA MGP_C3HHeJ_T0015962.1 MGP_C3HHeJ_G0014066.1 mouse_genomes_project X 585991 586231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011047.1 MGP_C3HHeJ_G0009180.1 mouse_genomes_project X 47883075 47883184 - Mir717 miRNA miRNA MGP_C3HHeJ_T0016413.1 MGP_C3HHeJ_G0014517.1 mouse_genomes_project X 107836078 107837222 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095371.1 MGP_C3HHeJ_G0035288.1 mouse_genomes_project X 16046006 16052108 - MGP_C3HHeJ_P0095371 Cfp protein_coding protein_coding MGP_C3HHeJ_T0095372.1 MGP_C3HHeJ_G0035288.1 mouse_genomes_project X 16046203 16048167 - Cfp protein_coding processed_transcript MGP_C3HHeJ_T0016564.1 MGP_C3HHeJ_G0014668.1 mouse_genomes_project X 140016049 140016540 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096376.1 MGP_C3HHeJ_G0035580.1 mouse_genomes_project X 89207385 89208228 + MGP_C3HHeJ_P0096376 Gm5941 protein_coding protein_coding MGP_C3HHeJ_T0011075.1 MGP_C3HHeJ_G0009208.1 mouse_genomes_project X 62864523 62864601 - Mir878 miRNA miRNA MGP_C3HHeJ_T0016645.1 MGP_C3HHeJ_G0014749.1 mouse_genomes_project X 156455987 156458653 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005510.1 MGP_C3HHeJ_G0004635.1 mouse_genomes_project X 52182336 52185507 - Gm2155 antisense antisense MGP_C3HHeJ_T0016458.1 MGP_C3HHeJ_G0014562.1 mouse_genomes_project X 115390897 115392702 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016232.1 MGP_C3HHeJ_G0014336.1 mouse_genomes_project X 74661529 74661860 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102380.1 MGP_C3HHeJ_G0040343.1 mouse_genomes_project X 168530935 168542760 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0096687.1 MGP_C3HHeJ_G0035657.1 mouse_genomes_project X 100266685 100269150 - MGP_C3HHeJ_P0096687 Nap1l2 protein_coding protein_coding MGP_C3HHeJ_T0095411.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31098407 31287972 + MGP_C3HHeJ_P0095411 Dock11 protein_coding protein_coding MGP_C3HHeJ_T0095412.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31153138 31287966 + MGP_C3HHeJ_P0095412 Dock11 protein_coding protein_coding MGP_C3HHeJ_T0095413.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31180552 31189502 + Dock11 protein_coding retained_intron MGP_C3HHeJ_T0095414.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31222468 31227859 + Dock11 protein_coding retained_intron MGP_C3HHeJ_T0095415.1 MGP_C3HHeJ_G0035303.1 mouse_genomes_project X 31253111 31287637 + MGP_C3HHeJ_P0095415 Dock11 protein_coding protein_coding MGP_C3HHeJ_T0097620.1 MGP_C3HHeJ_G0035927.1 mouse_genomes_project X 162870545 162892666 + MGP_C3HHeJ_P0097620 Asb11 protein_coding protein_coding MGP_C3HHeJ_T0097621.1 MGP_C3HHeJ_G0035927.1 mouse_genomes_project X 162870561 162880549 + Asb11 protein_coding retained_intron MGP_C3HHeJ_T0097622.1 MGP_C3HHeJ_G0035927.1 mouse_genomes_project X 162871609 162892660 + MGP_C3HHeJ_P0097622 Asb11 protein_coding protein_coding MGP_C3HHeJ_T0016103.1 MGP_C3HHeJ_G0014207.1 mouse_genomes_project X 45370516 45371189 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097663.1 MGP_C3HHeJ_G0035939.1 mouse_genomes_project X 164970149 165033618 - MGP_C3HHeJ_P0097663 Egfl6 protein_coding protein_coding MGP_C3HHeJ_T0096976.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086707 132090086 - MGP_C3HHeJ_P0096976 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096977.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086709 132091781 - MGP_C3HHeJ_P0096977 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096978.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086709 132091556 - MGP_C3HHeJ_P0096978 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096979.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132086709 132091781 - MGP_C3HHeJ_P0096979 Armcx2 protein_coding protein_coding MGP_C3HHeJ_T0096980.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132089047 132090072 - Armcx2 protein_coding processed_transcript MGP_C3HHeJ_T0096981.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132089822 132090503 - Armcx2 protein_coding processed_transcript MGP_C3HHeJ_T0096982.1 MGP_C3HHeJ_G0035754.1 mouse_genomes_project X 132090447 132091521 - Armcx2 protein_coding processed_transcript MGP_C3HHeJ_T0016497.1 MGP_C3HHeJ_G0014601.1 mouse_genomes_project X 130260467 130261255 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016377.1 MGP_C3HHeJ_G0014481.1 mouse_genomes_project X 101155169 101155441 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101022.1 MGP_C3HHeJ_G0039216.1 mouse_genomes_project X 53258810 53258881 - Snord61 snoRNA snoRNA MGP_C3HHeJ_T0097427.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153435940 153439245 - MGP_C3HHeJ_P0097427 Sat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097428.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153435940 153439245 - MGP_C3HHeJ_P0097428 Sat1 protein_coding protein_coding MGP_C3HHeJ_T0097429.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436114 153439128 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0097430.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436114 153437700 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0097431.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436114 153436868 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0097432.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153436123 153439141 - MGP_C3HHeJ_P0097432 Sat1 protein_coding protein_coding MGP_C3HHeJ_T0097433.1 MGP_C3HHeJ_G0035880.1 mouse_genomes_project X 153438250 153439123 - Sat1 protein_coding retained_intron MGP_C3HHeJ_T0009357.1 MGP_C3HHeJ_G0007494.1 mouse_genomes_project X 160176328 160187846 - Gm15205 lincRNA lincRNA MGP_C3HHeJ_T0097171.1 MGP_C3HHeJ_G0035823.1 mouse_genomes_project X 139690004 139799494 - MGP_C3HHeJ_P0097171 Gucy2f protein_coding protein_coding MGP_C3HHeJ_T0095911.1 MGP_C3HHeJ_G0035475.1 mouse_genomes_project X 69326552 69527326 + MGP_C3HHeJ_P0095911 protein_coding protein_coding MGP_C3HHeJ_T0099793.1 MGP_C3HHeJ_G0037987.1 mouse_genomes_project X 112523004 112523128 - Gm25366 snRNA snRNA MGP_C3HHeJ_T0095767.1 MGP_C3HHeJ_G0035424.1 mouse_genomes_project X 54795921 54807259 + MGP_C3HHeJ_P0095767 4930550L24Rik protein_coding protein_coding MGP_C3HHeJ_T0095768.1 MGP_C3HHeJ_G0035424.1 mouse_genomes_project X 54798072 54807259 + MGP_C3HHeJ_P0095768 4930550L24Rik protein_coding protein_coding MGP_C3HHeJ_T0016074.1 MGP_C3HHeJ_G0014178.1 mouse_genomes_project X 37290509 37291175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095839.1 MGP_C3HHeJ_G0035453.1 mouse_genomes_project X 67171164 67279153 + MGP_C3HHeJ_P0095839 Mamld1 protein_coding protein_coding MGP_C3HHeJ_T0095840.1 MGP_C3HHeJ_G0035453.1 mouse_genomes_project X 67171164 67280492 + MGP_C3HHeJ_P0095840 Mamld1 protein_coding protein_coding MGP_C3HHeJ_T0016502.1 MGP_C3HHeJ_G0014606.1 mouse_genomes_project X 131812579 131812944 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016092.1 MGP_C3HHeJ_G0014196.1 mouse_genomes_project X 41866174 41866582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016684.1 MGP_C3HHeJ_G0014788.1 mouse_genomes_project X 164926217 164927615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016455.1 MGP_C3HHeJ_G0014559.1 mouse_genomes_project X 115034523 115034727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095464.1 MGP_C3HHeJ_G0035324.1 mouse_genomes_project X 32474874 32476568 - MGP_C3HHeJ_P0095464 Gm9 protein_coding protein_coding MGP_C3HHeJ_T0097614.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853339 162867451 + MGP_C3HHeJ_P0097614 Piga protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097615.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853339 162867446 + MGP_C3HHeJ_P0097615 Piga protein_coding protein_coding MGP_C3HHeJ_T0097616.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853364 162867444 + MGP_C3HHeJ_P0097616 Piga protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097617.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162853455 162867448 + MGP_C3HHeJ_P0097617 Piga protein_coding protein_coding MGP_C3HHeJ_T0097618.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162856132 162865521 + MGP_C3HHeJ_P0097618 Piga protein_coding protein_coding MGP_C3HHeJ_T0097619.1 MGP_C3HHeJ_G0035926.1 mouse_genomes_project X 162859062 162865608 + Piga protein_coding retained_intron MGP_C3HHeJ_T0095557.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 37905534 38560905 - MGP_C3HHeJ_P0095557 Tenm1 protein_coding protein_coding MGP_C3HHeJ_T0095558.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 37905534 38560926 - MGP_C3HHeJ_P0095558 Tenm1 protein_coding protein_coding MGP_C3HHeJ_T0095559.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 37910059 38666923 - MGP_C3HHeJ_P0095559 Tenm1 protein_coding protein_coding MGP_C3HHeJ_T0095560.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 38210917 38823792 - Tenm1 protein_coding retained_intron MGP_C3HHeJ_T0095561.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 38290646 38823915 - Tenm1 protein_coding retained_intron MGP_C3HHeJ_T0095562.1 MGP_C3HHeJ_G0035351.1 mouse_genomes_project X 38716946 38823792 - Tenm1 protein_coding processed_transcript MGP_C3HHeJ_T0016560.1 MGP_C3HHeJ_G0014664.1 mouse_genomes_project X 139589985 139592132 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016237.1 MGP_C3HHeJ_G0014341.1 mouse_genomes_project X 74962055 74963010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016247.1 MGP_C3HHeJ_G0014351.1 mouse_genomes_project X 76985420 76985645 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099784.1 MGP_C3HHeJ_G0037978.1 mouse_genomes_project X 102229210 102229321 - Gm22090 snRNA snRNA MGP_C3HHeJ_T0095291.1 MGP_C3HHeJ_G0035265.1 mouse_genomes_project X 11600636 11603313 + MGP_C3HHeJ_P0095291 protein_coding protein_coding MGP_C3HHeJ_T0011083.1 MGP_C3HHeJ_G0009216.1 mouse_genomes_project X 64031309 64031387 - Mir547 miRNA miRNA MGP_C3HHeJ_T0096871.1 MGP_C3HHeJ_G0035723.1 mouse_genomes_project X 117042776 117046516 + MGP_C3HHeJ_P0096871 Pabpc5 protein_coding protein_coding MGP_C3HHeJ_T0096872.1 MGP_C3HHeJ_G0035723.1 mouse_genomes_project X 117042805 117046360 + MGP_C3HHeJ_P0096872 Pabpc5 protein_coding protein_coding MGP_C3HHeJ_T0095894.1 MGP_C3HHeJ_G0035467.1 mouse_genomes_project X 68618374 68842783 - MGP_C3HHeJ_P0095894 Gabra3 protein_coding protein_coding MGP_C3HHeJ_T0095895.1 MGP_C3HHeJ_G0035467.1 mouse_genomes_project X 68620268 68843838 - MGP_C3HHeJ_P0095895 Gabra3 protein_coding protein_coding MGP_C3HHeJ_T0095896.1 MGP_C3HHeJ_G0035467.1 mouse_genomes_project X 68693322 68842817 - Gabra3 protein_coding processed_transcript MGP_C3HHeJ_T0097507.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158445702 158461803 - MGP_C3HHeJ_P0097507 Pdha1 protein_coding protein_coding MGP_C3HHeJ_T0097508.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158450784 158452459 - Pdha1 protein_coding retained_intron MGP_C3HHeJ_T0097509.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158452781 158461699 - Pdha1 protein_coding retained_intron MGP_C3HHeJ_T0097510.1 MGP_C3HHeJ_G0035898.1 mouse_genomes_project X 158460286 158461746 - Pdha1 protein_coding processed_transcript MGP_C3HHeJ_T0016001.1 MGP_C3HHeJ_G0014105.1 mouse_genomes_project X 7848422 7849105 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011031.1 MGP_C3HHeJ_G0009164.1 mouse_genomes_project X 8617169 8617238 + Gm25246 miRNA miRNA MGP_C3HHeJ_T0015984.1 MGP_C3HHeJ_G0014088.1 mouse_genomes_project X 3920300 3921232 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096223.1 MGP_C3HHeJ_G0035524.1 mouse_genomes_project X 71143726 71153023 + MGP_C3HHeJ_P0096223 protein_coding protein_coding MGP_C3HHeJ_T0101070.1 MGP_C3HHeJ_G0039264.1 mouse_genomes_project X 162712946 162713076 + Gm22023 snoRNA snoRNA MGP_C3HHeJ_T0095071.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430167 2433679 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0095072.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430193 2434375 + Tfe3 protein_coding processed_transcript MGP_C3HHeJ_T0095073.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430265 2442809 + MGP_C3HHeJ_P0095073 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095074.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430271 2442806 + MGP_C3HHeJ_P0095074 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095075.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430283 2442808 + MGP_C3HHeJ_P0095075 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095076.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430302 2442806 + MGP_C3HHeJ_P0095076 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095077.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430304 2442808 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0095078.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2430374 2442809 + MGP_C3HHeJ_P0095078 Tfe3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0095079.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431550 2434400 + MGP_C3HHeJ_P0095079 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095080.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431566 2442808 + MGP_C3HHeJ_P0095080 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095081.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431648 2442804 + MGP_C3HHeJ_P0095081 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095082.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2431694 2442806 + MGP_C3HHeJ_P0095082 Tfe3 protein_coding protein_coding MGP_C3HHeJ_T0095083.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2432259 2442804 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0095084.1 MGP_C3HHeJ_G0035205.1 mouse_genomes_project X 2437037 2438926 + Tfe3 protein_coding retained_intron MGP_C3HHeJ_T0016165.1 MGP_C3HHeJ_G0014269.1 mouse_genomes_project X 59240735 59242578 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016358.1 MGP_C3HHeJ_G0014462.1 mouse_genomes_project X 100146904 100148212 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0096837.1 MGP_C3HHeJ_G0035708.1 mouse_genomes_project X 109502121 109563497 + MGP_C3HHeJ_P0096837 Apool protein_coding protein_coding MGP_C3HHeJ_T0096838.1 MGP_C3HHeJ_G0035708.1 mouse_genomes_project X 109502135 109539276 + Apool protein_coding retained_intron MGP_C3HHeJ_T0096839.1 MGP_C3HHeJ_G0035708.1 mouse_genomes_project X 109502153 109563177 + MGP_C3HHeJ_P0096839 Apool protein_coding protein_coding MGP_C3HHeJ_T0097020.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237577 133242805 + MGP_C3HHeJ_P0097020 Bhlhb9 protein_coding protein_coding MGP_C3HHeJ_T0097021.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237579 133241053 + MGP_C3HHeJ_P0097021 Bhlhb9 protein_coding protein_coding MGP_C3HHeJ_T0097022.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237579 133242808 + MGP_C3HHeJ_P0097022 Bhlhb9 protein_coding protein_coding MGP_C3HHeJ_T0097023.1 MGP_C3HHeJ_G0035770.1 mouse_genomes_project X 133237709 133239197 + Bhlhb9 protein_coding retained_intron MGP_C3HHeJ_T0098224.1 MGP_C3HHeJ_G0036436.1 mouse_genomes_project X 73150122 73150230 - Gm26041 rRNA rRNA MGP_C3HHeJ_T0016685.1 MGP_C3HHeJ_G0014789.1 mouse_genomes_project X 164929599 164930425 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097515.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158834818 158860473 + MGP_C3HHeJ_P0097515 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097516.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835080 158862509 + Phka2 protein_coding retained_intron MGP_C3HHeJ_T0097517.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835080 158923714 + MGP_C3HHeJ_P0097517 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097518.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835111 158886959 + MGP_C3HHeJ_P0097518 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097519.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158835458 158916832 + MGP_C3HHeJ_P0097519 Phka2 protein_coding protein_coding MGP_C3HHeJ_T0097520.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158856044 158869485 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0097521.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158856054 158869480 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0097522.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158863590 158916864 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0097523.1 MGP_C3HHeJ_G0035900.1 mouse_genomes_project X 158885790 158890753 + Phka2 protein_coding processed_transcript MGP_C3HHeJ_T0101017.1 MGP_C3HHeJ_G0039211.1 mouse_genomes_project X 16626601 16626732 - Gm22592 snoRNA snoRNA MGP_C3HHeJ_T0099765.1 MGP_C3HHeJ_G0037959.1 mouse_genomes_project X 54261108 54261215 - Gm25851 snRNA snRNA MGP_C3HHeJ_T0095676.1 MGP_C3HHeJ_G0035389.1 mouse_genomes_project X 47727908 48076319 - MGP_C3HHeJ_P0095676 Gpc3 protein_coding protein_coding MGP_C3HHeJ_T0095677.1 MGP_C3HHeJ_G0035389.1 mouse_genomes_project X 47847137 48076348 - MGP_C3HHeJ_P0095677 Gpc3 protein_coding protein_coding MGP_C3HHeJ_T0011672.1 MGP_C3HHeJ_G0009805.1 mouse_genomes_project X 100715579 100715650 + Gm27798 misc_RNA misc_RNA MGP_C3HHeJ_T0102379.1 MGP_C3HHeJ_G0040342.1 mouse_genomes_project X 168530935 168538325 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016097.1 MGP_C3HHeJ_G0014201.1 mouse_genomes_project X 43155209 43157878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095971.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70035880 70039677 + MGP_C3HHeJ_P0095971 Ssr4 protein_coding protein_coding MGP_C3HHeJ_T0095972.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70035914 70039679 + MGP_C3HHeJ_P0095972 Ssr4 protein_coding protein_coding MGP_C3HHeJ_T0095973.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036034 70037945 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095974.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036036 70039185 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095975.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036036 70039679 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095976.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036076 70039664 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095977.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70036117 70039016 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0095978.1 MGP_C3HHeJ_G0035492.1 mouse_genomes_project X 70037696 70039683 + Ssr4 protein_coding retained_intron MGP_C3HHeJ_T0099815.1 MGP_C3HHeJ_G0038009.1 mouse_genomes_project X 162696285 162696391 - Gm25367 snRNA snRNA MGP_C3HHeJ_T0005540.1 MGP_C3HHeJ_G0004658.1 mouse_genomes_project X 156018765 156049276 - Gm15169 antisense antisense MGP_C3HHeJ_T0005541.1 MGP_C3HHeJ_G0004658.1 mouse_genomes_project X 156036136 156049269 - Gm15169 antisense antisense MGP_C3HHeJ_T0009360.1 MGP_C3HHeJ_G0007497.1 mouse_genomes_project X 165316101 165322882 - Gm15230 lincRNA lincRNA MGP_C3HHeJ_T0016691.1 MGP_C3HHeJ_G0014795.1 mouse_genomes_project X 166591506 166591975 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016370.1 MGP_C3HHeJ_G0014474.1 mouse_genomes_project X 100768358 100769646 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011052.1 MGP_C3HHeJ_G0009185.1 mouse_genomes_project X 48220102 48220185 - Mir18b miRNA miRNA MGP_C3HHeJ_T0015993.1 MGP_C3HHeJ_G0014097.1 mouse_genomes_project X 6585368 6585491 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095825.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416032 65934987 + MGP_C3HHeJ_P0095825 Aff2 protein_coding protein_coding MGP_C3HHeJ_T0095826.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416243 65609571 + Aff2 protein_coding processed_transcript MGP_C3HHeJ_T0095827.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416438 65850686 + Aff2 protein_coding processed_transcript MGP_C3HHeJ_T0095828.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65416530 65934781 + MGP_C3HHeJ_P0095828 Aff2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0095829.1 MGP_C3HHeJ_G0035448.1 mouse_genomes_project X 65923627 65933726 + Aff2 protein_coding retained_intron MGP_C3HHeJ_T0096544.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97623966 97626568 + Gdpd2 protein_coding processed_transcript MGP_C3HHeJ_T0096545.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97624031 97629332 + Gdpd2 protein_coding retained_intron MGP_C3HHeJ_T0096546.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97624035 97633013 + MGP_C3HHeJ_P0096546 Gdpd2 protein_coding protein_coding MGP_C3HHeJ_T0096547.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97624279 97633013 + MGP_C3HHeJ_P0096547 Gdpd2 protein_coding protein_coding MGP_C3HHeJ_T0096548.1 MGP_C3HHeJ_G0035625.1 mouse_genomes_project X 97630458 97633014 + Gdpd2 protein_coding retained_intron MGP_C3HHeJ_T0097005.1 MGP_C3HHeJ_G0035765.1 mouse_genomes_project X 132961774 133004530 - MGP_C3HHeJ_P0097005 Tcp11x2 protein_coding protein_coding MGP_C3HHeJ_T0011086.1 MGP_C3HHeJ_G0009219.1 mouse_genomes_project X 68445092 68445174 - Mir224 miRNA miRNA MGP_C3HHeJ_T0096768.1 MGP_C3HHeJ_G0035684.1 mouse_genomes_project X 103863048 103995752 + MGP_C3HHeJ_P0096768 Gm5127 protein_coding protein_coding MGP_C3HHeJ_T0096769.1 MGP_C3HHeJ_G0035684.1 mouse_genomes_project X 103863048 103995057 + MGP_C3HHeJ_P0096769 Gm5127 protein_coding protein_coding MGP_C3HHeJ_T0096937.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653224 131709331 + MGP_C3HHeJ_P0096937 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096938.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653301 131713200 + MGP_C3HHeJ_P0096938 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096939.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653448 131710243 + MGP_C3HHeJ_P0096939 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096940.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131653459 131709638 + MGP_C3HHeJ_P0096940 Drp2 protein_coding protein_coding MGP_C3HHeJ_T0096941.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131673532 131692042 + Drp2 protein_coding processed_transcript MGP_C3HHeJ_T0096942.1 MGP_C3HHeJ_G0035744.1 mouse_genomes_project X 131673586 131710031 + Drp2 protein_coding retained_intron MGP_C3HHeJ_T0098236.1 MGP_C3HHeJ_G0036448.1 mouse_genomes_project X 162560553 162560674 + n-R5s18 rRNA rRNA MGP_C3HHeJ_T0096549.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655118 97711918 + MGP_C3HHeJ_P0096549 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096550.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655119 97711920 + MGP_C3HHeJ_P0096550 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096551.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655145 97711920 + MGP_C3HHeJ_P0096551 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096552.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97655391 97711922 + Dlg3 protein_coding retained_intron MGP_C3HHeJ_T0096553.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97662655 97711920 + MGP_C3HHeJ_P0096553 Dlg3 protein_coding protein_coding MGP_C3HHeJ_T0096554.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97665177 97711920 + Dlg3 protein_coding processed_transcript MGP_C3HHeJ_T0096555.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97685766 97700162 + Dlg3 protein_coding processed_transcript MGP_C3HHeJ_T0096556.1 MGP_C3HHeJ_G0035626.1 mouse_genomes_project X 97701548 97708342 + Dlg3 protein_coding processed_transcript MGP_C3HHeJ_T0016172.1 MGP_C3HHeJ_G0014276.1 mouse_genomes_project X 62074323 62076451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097422.1 MGP_C3HHeJ_G0035875.1 mouse_genomes_project X 152455999 152460167 - MGP_C3HHeJ_P0097422 4930524N10Rik protein_coding protein_coding MGP_C3HHeJ_T0016194.1 MGP_C3HHeJ_G0014298.1 mouse_genomes_project X 66696737 66697282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009361.1 MGP_C3HHeJ_G0007498.1 mouse_genomes_project X 165529981 165537510 - Gm8817 lincRNA lincRNA MGP_C3HHeJ_T0009362.1 MGP_C3HHeJ_G0007498.1 mouse_genomes_project X 165530123 165537510 - Gm8817 lincRNA lincRNA MGP_C3HHeJ_T0009363.1 MGP_C3HHeJ_G0007498.1 mouse_genomes_project X 165530339 165535519 - Gm8817 lincRNA lincRNA MGP_C3HHeJ_T0097172.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139834284 139847968 + MGP_C3HHeJ_P0097172 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0097173.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139835450 139847968 + MGP_C3HHeJ_P0097173 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0097174.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139835690 139847968 + MGP_C3HHeJ_P0097174 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0097175.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139835740 139837620 + Nxt2 protein_coding retained_intron MGP_C3HHeJ_T0097176.1 MGP_C3HHeJ_G0035824.1 mouse_genomes_project X 139836634 139847969 + MGP_C3HHeJ_P0097176 Nxt2 protein_coding protein_coding MGP_C3HHeJ_T0016185.1 MGP_C3HHeJ_G0014289.1 mouse_genomes_project X 64616546 64616894 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0095854.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67528076 67557052 + MGP_C3HHeJ_P0095854 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095855.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67528076 67587402 + MGP_C3HHeJ_P0095855 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095856.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67528253 67562617 + MGP_C3HHeJ_P0095856 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095857.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67533159 67557030 + MGP_C3HHeJ_P0095857 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095858.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67533159 67557030 + MGP_C3HHeJ_P0095858 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095859.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67533159 67557030 + MGP_C3HHeJ_P0095859 Mtmr1 protein_coding protein_coding MGP_C3HHeJ_T0095860.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67559472 67560866 + Mtmr1 protein_coding retained_intron MGP_C3HHeJ_T0095861.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67559973 67561247 + Mtmr1 protein_coding retained_intron MGP_C3HHeJ_T0095862.1 MGP_C3HHeJ_G0035455.1 mouse_genomes_project X 67562310 67586869 + Mtmr1 protein_coding retained_intron MGP_C3HHeJ_T0097653.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164885343 164898159 + MGP_C3HHeJ_P0097653 Trappc2 protein_coding protein_coding MGP_C3HHeJ_T0097654.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164885545 164896551 + Trappc2 protein_coding retained_intron MGP_C3HHeJ_T0097655.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164885545 164898157 + MGP_C3HHeJ_P0097655 Trappc2 protein_coding protein_coding MGP_C3HHeJ_T0097656.1 MGP_C3HHeJ_G0035936.1 mouse_genomes_project X 164890072 164898159 + MGP_C3HHeJ_P0097656 Trappc2 protein_coding protein_coding MGP_C3HHeJ_T0011046.1 MGP_C3HHeJ_G0009179.1 mouse_genomes_project X 47837607 47837668 - Mir6384 miRNA miRNA MGP_C3HHeJ_T0016403.1 MGP_C3HHeJ_G0014507.1 mouse_genomes_project X 104581412 104582360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016661.1 MGP_C3HHeJ_G0014765.1 mouse_genomes_project X 159045864 159045994 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059993.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28581374 28639093 + MGP_C3HHeJ_P0059993 Prkci protein_coding protein_coding MGP_C3HHeJ_T0059994.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28590820 28620750 + MGP_C3HHeJ_P0059994 Prkci protein_coding protein_coding MGP_C3HHeJ_T0059995.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28617958 28625598 + Prkci protein_coding processed_transcript MGP_C3HHeJ_T0059996.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28624650 28627425 + MGP_C3HHeJ_P0059996 Prkci protein_coding protein_coding MGP_C3HHeJ_T0059997.1 MGP_C3HHeJ_G0026844.1 mouse_genomes_project 3 28624715 28626170 + Prkci protein_coding retained_intron MGP_C3HHeJ_T0001112.1 MGP_C3HHeJ_G0001046.1 mouse_genomes_project 3 32426906 32427020 + TEC TEC MGP_C3HHeJ_T0001095.1 MGP_C3HHeJ_G0001029.1 mouse_genomes_project 3 27797119 27799232 - TEC TEC MGP_C3HHeJ_T0007491.1 MGP_C3HHeJ_G0006129.1 mouse_genomes_project 3 74766608 74776407 - Platr10 lincRNA lincRNA MGP_C3HHeJ_T0007492.1 MGP_C3HHeJ_G0006129.1 mouse_genomes_project 3 74767002 74767821 - Platr10 lincRNA lincRNA MGP_C3HHeJ_T0061791.1 MGP_C3HHeJ_G0027218.1 mouse_genomes_project 3 92439880 92442218 - MGP_C3HHeJ_P0061791 Smcp protein_coding protein_coding MGP_C3HHeJ_T0061792.1 MGP_C3HHeJ_G0027218.1 mouse_genomes_project 3 92439880 92444970 - MGP_C3HHeJ_P0061792 Smcp protein_coding protein_coding MGP_C3HHeJ_T0060516.1 MGP_C3HHeJ_G0026938.1 mouse_genomes_project 3 53527559 53551454 + MGP_C3HHeJ_P0060516 Sohlh2 protein_coding protein_coding MGP_C3HHeJ_T0014127.1 MGP_C3HHeJ_G0012231.1 mouse_genomes_project 3 124445290 124447420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007670.1 MGP_C3HHeJ_G0006270.1 mouse_genomes_project 3 146493757 146495292 + Gm43447 lincRNA lincRNA MGP_C3HHeJ_T0007461.1 MGP_C3HHeJ_G0006105.1 mouse_genomes_project 3 51065508 51075353 - Gm30292 lincRNA lincRNA MGP_C3HHeJ_T0007553.1 MGP_C3HHeJ_G0006174.1 mouse_genomes_project 3 101049621 101050926 + Gm43121 lincRNA lincRNA MGP_C3HHeJ_T0014204.1 MGP_C3HHeJ_G0012308.1 mouse_genomes_project 3 149179117 149179796 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059693.1 MGP_C3HHeJ_G0026773.1 mouse_genomes_project 3 7511697 7515776 - MGP_C3HHeJ_P0059693 Pmp2 protein_coding protein_coding MGP_C3HHeJ_T0007394.1 MGP_C3HHeJ_G0006052.1 mouse_genomes_project 3 18603541 18604260 - Gm29137 lincRNA lincRNA MGP_C3HHeJ_T0007360.1 MGP_C3HHeJ_G0006032.1 mouse_genomes_project 3 5110574 5143461 - 1700010I02Rik lincRNA lincRNA MGP_C3HHeJ_T0007361.1 MGP_C3HHeJ_G0006032.1 mouse_genomes_project 3 5110574 5143454 - 1700010I02Rik lincRNA lincRNA MGP_C3HHeJ_T0100549.1 MGP_C3HHeJ_G0038743.1 mouse_genomes_project 3 81121546 81121686 + Gm22531 snoRNA snoRNA MGP_C3HHeJ_T0061092.1 MGP_C3HHeJ_G0027077.1 mouse_genomes_project 3 86804344 86817344 + MGP_C3HHeJ_P0061092 Cd5l protein_coding protein_coding MGP_C3HHeJ_T0064040.1 MGP_C3HHeJ_G0027698.1 mouse_genomes_project 3 156497672 156508586 + MGP_C3HHeJ_P0064040 Asb17 protein_coding protein_coding MGP_C3HHeJ_T0064041.1 MGP_C3HHeJ_G0027698.1 mouse_genomes_project 3 156497729 156507115 + MGP_C3HHeJ_P0064041 Asb17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013961.1 MGP_C3HHeJ_G0012065.1 mouse_genomes_project 3 70847962 70848121 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001325.1 MGP_C3HHeJ_G0001256.1 mouse_genomes_project 3 137321474 137324170 - TEC TEC MGP_C3HHeJ_T0063055.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118044525 118118521 - MGP_C3HHeJ_P0063055 Agl protein_coding protein_coding MGP_C3HHeJ_T0063056.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118051217 118117777 - MGP_C3HHeJ_P0063056 Agl protein_coding protein_coding MGP_C3HHeJ_T0063057.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118051761 118089702 - MGP_C3HHeJ_P0063057 Agl protein_coding protein_coding MGP_C3HHeJ_T0063058.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118056769 118118397 - MGP_C3HHeJ_P0063058 Agl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063059.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118062959 118118484 - MGP_C3HHeJ_P0063059 Agl protein_coding protein_coding MGP_C3HHeJ_T0063060.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118088464 118090202 - MGP_C3HHeJ_P0063060 Agl protein_coding protein_coding MGP_C3HHeJ_T0063061.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118099078 118118386 - Agl protein_coding retained_intron MGP_C3HHeJ_T0063062.1 MGP_C3HHeJ_G0027519.1 mouse_genomes_project 3 118100414 118118206 - MGP_C3HHeJ_P0063062 Agl protein_coding protein_coding MGP_C3HHeJ_T0001142.1 MGP_C3HHeJ_G0001076.1 mouse_genomes_project 3 47306630 47307696 + TEC TEC MGP_C3HHeJ_T0001146.1 MGP_C3HHeJ_G0001080.1 mouse_genomes_project 3 48891968 48895672 - TEC TEC MGP_C3HHeJ_T0007580.1 MGP_C3HHeJ_G0006196.1 mouse_genomes_project 3 109363374 109365099 + lincRNA lincRNA MGP_C3HHeJ_T0060213.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35155256 35160195 - MGP_C3HHeJ_P0060213 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060214.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35156120 35160195 - MGP_C3HHeJ_P0060214 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060215.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35156122 35160195 - MGP_C3HHeJ_P0060215 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060216.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35156257 35160169 - MGP_C3HHeJ_P0060216 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0060217.1 MGP_C3HHeJ_G0026883.1 mouse_genomes_project 3 35157216 35160457 - MGP_C3HHeJ_P0060217 Cetn4 protein_coding protein_coding MGP_C3HHeJ_T0001193.1 MGP_C3HHeJ_G0001125.1 mouse_genomes_project 3 57132041 57133147 + TEC TEC MGP_C3HHeJ_T0061889.1 MGP_C3HHeJ_G0027262.1 mouse_genomes_project 3 94729367 94729451 + MGP_C3HHeJ_P0061889 protein_coding protein_coding MGP_C3HHeJ_T0061790.1 MGP_C3HHeJ_G0027217.1 mouse_genomes_project 3 92425346 92428180 - MGP_C3HHeJ_P0061790 Ivl protein_coding protein_coding MGP_C3HHeJ_T0059791.1 MGP_C3HHeJ_G0026807.1 mouse_genomes_project 3 16920284 16939059 - MGP_C3HHeJ_P0059791 1700064H15Rik protein_coding protein_coding MGP_C3HHeJ_T0101195.1 MGP_C3HHeJ_G0039335.1 mouse_genomes_project 3 94495665 94496439 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101196.1 MGP_C3HHeJ_G0039335.1 mouse_genomes_project 3 94495856 94496273 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099301.1 MGP_C3HHeJ_G0037495.1 mouse_genomes_project 3 117730574 117730750 - Gm22361 snRNA snRNA MGP_C3HHeJ_T0007698.1 MGP_C3HHeJ_G0006289.1 mouse_genomes_project 3 156441746 156444529 - 5730460C07Rik lincRNA lincRNA MGP_C3HHeJ_T0064099.1 MGP_C3HHeJ_G0027707.1 mouse_genomes_project 3 157471552 157755838 - MGP_C3HHeJ_P0064099 Tnni3k protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064100.1 MGP_C3HHeJ_G0027707.1 mouse_genomes_project 3 157471560 157755838 - MGP_C3HHeJ_P0064100 Tnni3k protein_coding protein_coding MGP_C3HHeJ_T0064101.1 MGP_C3HHeJ_G0027707.1 mouse_genomes_project 3 157724980 157755781 - Tnni3k protein_coding retained_intron MGP_C3HHeJ_T0062236.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 96999788 97011598 + MGP_C3HHeJ_P0062236 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062237.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 96999846 97011110 + MGP_C3HHeJ_P0062237 Pias3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062238.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000479 97003079 + MGP_C3HHeJ_P0062238 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062239.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000486 97011706 + MGP_C3HHeJ_P0062239 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062240.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000520 97011609 + MGP_C3HHeJ_P0062240 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0062241.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000536 97003370 + Pias3 protein_coding retained_intron MGP_C3HHeJ_T0062242.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97000597 97005080 + MGP_C3HHeJ_P0062242 Pias3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062243.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97003865 97009456 + Pias3 protein_coding retained_intron MGP_C3HHeJ_T0062244.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97004741 97009521 + Pias3 protein_coding retained_intron MGP_C3HHeJ_T0062245.1 MGP_C3HHeJ_G0027333.1 mouse_genomes_project 3 97009800 97010769 + MGP_C3HHeJ_P0062245 Pias3 protein_coding protein_coding MGP_C3HHeJ_T0004167.1 MGP_C3HHeJ_G0003664.1 mouse_genomes_project 3 51390165 51393182 - Gm43803 antisense antisense MGP_C3HHeJ_T0004168.1 MGP_C3HHeJ_G0003664.1 mouse_genomes_project 3 51390182 51391486 - Gm43803 antisense antisense MGP_C3HHeJ_T0001156.1 MGP_C3HHeJ_G0001090.1 mouse_genomes_project 3 49765872 49767981 - TEC TEC MGP_C3HHeJ_T0017796.1 MGP_C3HHeJ_G0015291.1 mouse_genomes_project 3 151434254 151436200 + Gm43572 processed_transcript processed_transcript MGP_C3HHeJ_T0010481.1 MGP_C3HHeJ_G0008614.1 mouse_genomes_project 3 155939985 155940097 + Gm27405 miRNA miRNA MGP_C3HHeJ_T0062753.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108629949 108644599 - MGP_C3HHeJ_P0062753 Ahcyl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062754.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108629951 108663483 - MGP_C3HHeJ_P0062754 Ahcyl1 protein_coding protein_coding MGP_C3HHeJ_T0062755.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108630784 108632428 - Ahcyl1 protein_coding processed_transcript MGP_C3HHeJ_T0062756.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108631314 108637406 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0062757.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108632223 108634315 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0062758.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108635081 108636341 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0062759.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108637979 108662886 - MGP_C3HHeJ_P0062759 Ahcyl1 protein_coding protein_coding MGP_C3HHeJ_T0062760.1 MGP_C3HHeJ_G0027456.1 mouse_genomes_project 3 108638567 108663428 - Ahcyl1 protein_coding retained_intron MGP_C3HHeJ_T0060366.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49432863 49529080 - MGP_C3HHeJ_P0060366 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060367.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435382 49510840 - MGP_C3HHeJ_P0060367 Elf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060368.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435383 49529061 - MGP_C3HHeJ_P0060368 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060369.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435815 49459373 - MGP_C3HHeJ_P0060369 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060370.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435817 49459533 - MGP_C3HHeJ_P0060370 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060371.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435817 49459472 - MGP_C3HHeJ_P0060371 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060372.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49435837 49510798 - MGP_C3HHeJ_P0060372 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060373.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49438835 49440391 - Elf2 protein_coding retained_intron MGP_C3HHeJ_T0060374.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49444995 49529075 - MGP_C3HHeJ_P0060374 Elf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060375.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49444995 49459326 - MGP_C3HHeJ_P0060375 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0060376.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49445011 49528978 - Elf2 protein_coding processed_transcript MGP_C3HHeJ_T0060377.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49445011 49459382 - MGP_C3HHeJ_P0060377 Elf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060378.1 MGP_C3HHeJ_G0026909.1 mouse_genomes_project 3 49445175 49459402 - MGP_C3HHeJ_P0060378 Elf2 protein_coding protein_coding MGP_C3HHeJ_T0059918.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348203 26350183 + MGP_C3HHeJ_P0059918 Rpl22l1 protein_coding protein_coding MGP_C3HHeJ_T0059919.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348236 26350192 + MGP_C3HHeJ_P0059919 Rpl22l1 protein_coding protein_coding MGP_C3HHeJ_T0059920.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348275 26350183 + Rpl22l1 protein_coding retained_intron MGP_C3HHeJ_T0059921.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348277 26350190 + MGP_C3HHeJ_P0059921 Rpl22l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059922.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348332 26349468 + Rpl22l1 protein_coding processed_transcript MGP_C3HHeJ_T0059923.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348364 26350062 + Rpl22l1 protein_coding processed_transcript MGP_C3HHeJ_T0059924.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26348430 26350183 + Rpl22l1 protein_coding processed_transcript MGP_C3HHeJ_T0059925.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26349225 26350183 + Rpl22l1 protein_coding retained_intron MGP_C3HHeJ_T0059926.1 MGP_C3HHeJ_G0026832.1 mouse_genomes_project 3 26349266 26350184 + Rpl22l1 protein_coding retained_intron MGP_C3HHeJ_T0101974.1 MGP_C3HHeJ_G0039939.1 mouse_genomes_project 3 108880024 108884492 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004245.1 MGP_C3HHeJ_G0003718.1 mouse_genomes_project 3 103440289 103458377 - Tspan2os antisense antisense MGP_C3HHeJ_T0098413.1 MGP_C3HHeJ_G0036618.1 mouse_genomes_project 3 94659735 94660990 - Gm43768 sense_intronic sense_intronic MGP_C3HHeJ_T0062956.1 MGP_C3HHeJ_G0027498.1 mouse_genomes_project 3 111314413 111319303 - MGP_C3HHeJ_P0062956 Prmt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062957.1 MGP_C3HHeJ_G0027498.1 mouse_genomes_project 3 111314416 111319298 - MGP_C3HHeJ_P0062957 Prmt6 protein_coding protein_coding MGP_C3HHeJ_T0062958.1 MGP_C3HHeJ_G0027498.1 mouse_genomes_project 3 111316853 111319303 - MGP_C3HHeJ_P0062958 Prmt6 protein_coding protein_coding MGP_C3HHeJ_T0013918.1 MGP_C3HHeJ_G0012022.1 mouse_genomes_project 3 58831564 58832300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062246.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011702 97014183 - MGP_C3HHeJ_P0062246 Nudt17 protein_coding protein_coding MGP_C3HHeJ_T0062247.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011703 97012879 - Nudt17 protein_coding retained_intron MGP_C3HHeJ_T0062248.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011704 97014198 - MGP_C3HHeJ_P0062248 Nudt17 protein_coding protein_coding MGP_C3HHeJ_T0062249.1 MGP_C3HHeJ_G0027334.1 mouse_genomes_project 3 97011803 97014175 - MGP_C3HHeJ_P0062249 Nudt17 protein_coding protein_coding MGP_C3HHeJ_T0013871.1 MGP_C3HHeJ_G0011975.1 mouse_genomes_project 3 44666314 44666556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007421.1 MGP_C3HHeJ_G0006077.1 mouse_genomes_project 3 34325214 34332213 - Gm11548 lincRNA lincRNA MGP_C3HHeJ_T0014185.1 MGP_C3HHeJ_G0012289.1 mouse_genomes_project 3 142183237 142184618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011448.1 MGP_C3HHeJ_G0009581.1 mouse_genomes_project 3 82928063 82928361 - Gm22342 misc_RNA misc_RNA MGP_C3HHeJ_T0004253.1 MGP_C3HHeJ_G0003723.1 mouse_genomes_project 3 105847467 105857385 + Gm42956 antisense antisense MGP_C3HHeJ_T0060700.1 MGP_C3HHeJ_G0026981.1 mouse_genomes_project 3 62597642 62654598 + MGP_C3HHeJ_P0060700 Gmps protein_coding protein_coding MGP_C3HHeJ_T0001258.1 MGP_C3HHeJ_G0001190.1 mouse_genomes_project 3 117861613 117863972 - TEC TEC MGP_C3HHeJ_T0099275.1 MGP_C3HHeJ_G0037469.1 mouse_genomes_project 3 88487415 88487522 - Gm26465 snRNA snRNA MGP_C3HHeJ_T0013823.1 MGP_C3HHeJ_G0011927.1 mouse_genomes_project 3 28559191 28559654 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059708.1 MGP_C3HHeJ_G0026779.1 mouse_genomes_project 3 7658888 7673837 - MGP_C3HHeJ_P0059708 Gm38303 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099316.1 MGP_C3HHeJ_G0037510.1 mouse_genomes_project 3 148738598 148738701 - Gm22078 snRNA snRNA MGP_C3HHeJ_T0098420.1 MGP_C3HHeJ_G0036625.1 mouse_genomes_project 3 101247474 101251116 - Gm43462 sense_intronic sense_intronic MGP_C3HHeJ_T0060210.1 MGP_C3HHeJ_G0026882.1 mouse_genomes_project 3 35069345 35079692 - MGP_C3HHeJ_P0060210 Il21 protein_coding protein_coding MGP_C3HHeJ_T0060211.1 MGP_C3HHeJ_G0026882.1 mouse_genomes_project 3 35072432 35079639 - MGP_C3HHeJ_P0060211 Il21 protein_coding protein_coding MGP_C3HHeJ_T0060212.1 MGP_C3HHeJ_G0026882.1 mouse_genomes_project 3 35077368 35079710 - Il21 protein_coding retained_intron MGP_C3HHeJ_T0061669.1 MGP_C3HHeJ_G0027173.1 mouse_genomes_project 3 89834290 89840303 - MGP_C3HHeJ_P0061669 Creb3l4 protein_coding protein_coding MGP_C3HHeJ_T0061670.1 MGP_C3HHeJ_G0027173.1 mouse_genomes_project 3 89834360 89839934 - MGP_C3HHeJ_P0061670 Creb3l4 protein_coding protein_coding MGP_C3HHeJ_T0100564.1 MGP_C3HHeJ_G0038758.1 mouse_genomes_project 3 99669174 99669303 - Gm22341 snoRNA snoRNA MGP_C3HHeJ_T0059742.1 MGP_C3HHeJ_G0026789.1 mouse_genomes_project 3 12070551 12092569 + MGP_C3HHeJ_P0059742 Car13 protein_coding protein_coding MGP_C3HHeJ_T0061100.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890054 86922794 + MGP_C3HHeJ_P0061100 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061101.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890094 86977475 + MGP_C3HHeJ_P0061101 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061102.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890166 86912397 + MGP_C3HHeJ_P0061102 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061103.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890166 86912397 + MGP_C3HHeJ_P0061103 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0061104.1 MGP_C3HHeJ_G0027079.1 mouse_genomes_project 3 86890166 86912397 + MGP_C3HHeJ_P0061104 Fcrl5 protein_coding protein_coding MGP_C3HHeJ_T0062059.1 MGP_C3HHeJ_G0027289.1 mouse_genomes_project 3 95706141 95717437 + MGP_C3HHeJ_P0062059 Ctsk protein_coding protein_coding MGP_C3HHeJ_T0013926.1 MGP_C3HHeJ_G0012030.1 mouse_genomes_project 3 62436145 62436796 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062729.1 MGP_C3HHeJ_G0027448.1 mouse_genomes_project 3 108243237 108264145 + MGP_C3HHeJ_P0062729 Slc16a4 protein_coding protein_coding MGP_C3HHeJ_T0062730.1 MGP_C3HHeJ_G0027448.1 mouse_genomes_project 3 108243301 108254583 + Slc16a4 protein_coding retained_intron MGP_C3HHeJ_T0062731.1 MGP_C3HHeJ_G0027448.1 mouse_genomes_project 3 108243322 108259747 + MGP_C3HHeJ_P0062731 Slc16a4 protein_coding protein_coding MGP_C3HHeJ_T0062984.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151241 117183263 + MGP_C3HHeJ_P0062984 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062985.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151256 117151883 + MGP_C3HHeJ_P0062985 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062986.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151550 117164392 + MGP_C3HHeJ_P0062986 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062987.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151568 117189669 + MGP_C3HHeJ_P0062987 Dph5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062988.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151576 117165758 + MGP_C3HHeJ_P0062988 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062989.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151586 117183441 + MGP_C3HHeJ_P0062989 Dph5 protein_coding protein_coding MGP_C3HHeJ_T0062990.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151597 117155678 + Dph5 protein_coding retained_intron MGP_C3HHeJ_T0062991.1 MGP_C3HHeJ_G0027505.1 mouse_genomes_project 3 117151598 117156393 + Dph5 protein_coding retained_intron MGP_C3HHeJ_T0010425.1 MGP_C3HHeJ_G0008558.1 mouse_genomes_project 3 33104463 33104555 + Gm25442 miRNA miRNA MGP_C3HHeJ_T0004303.1 MGP_C3HHeJ_G0003754.1 mouse_genomes_project 3 133149560 133164429 + 4930534D22Rik antisense antisense MGP_C3HHeJ_T0061999.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95393221 95402812 - MGP_C3HHeJ_P0061999 Mllt11 protein_coding protein_coding MGP_C3HHeJ_T0062000.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95394115 95406552 - MGP_C3HHeJ_P0062000 Mllt11 protein_coding protein_coding MGP_C3HHeJ_T0062001.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95394125 95406555 - MGP_C3HHeJ_P0062001 Mllt11 protein_coding protein_coding MGP_C3HHeJ_T0062002.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95402220 95404856 - Mllt11 protein_coding processed_transcript MGP_C3HHeJ_T0062006.1 MGP_C3HHeJ_G0027279.1 mouse_genomes_project 3 95403180 95404782 - Mllt11 protein_coding processed_transcript MGP_C3HHeJ_T0013933.1 MGP_C3HHeJ_G0012037.1 mouse_genomes_project 3 64856603 64859388 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001332.1 MGP_C3HHeJ_G0001263.1 mouse_genomes_project 3 139890391 139892733 + TEC TEC MGP_C3HHeJ_T0060486.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062485 53079152 + MGP_C3HHeJ_P0060486 Alg5 protein_coding protein_coding MGP_C3HHeJ_T0060487.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062505 53080675 + MGP_C3HHeJ_P0060487 Alg5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060488.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062513 53074829 + MGP_C3HHeJ_P0060488 Alg5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060489.1 MGP_C3HHeJ_G0026931.1 mouse_genomes_project 3 53062519 53067760 + Alg5 protein_coding retained_intron MGP_C3HHeJ_T0007621.1 MGP_C3HHeJ_G0006227.1 mouse_genomes_project 3 132698511 132701266 + Gm43351 lincRNA lincRNA MGP_C3HHeJ_T0017751.1 MGP_C3HHeJ_G0015275.1 mouse_genomes_project 3 101037719 101040180 + 4930406D18Rik processed_transcript retained_intron MGP_C3HHeJ_T0017752.1 MGP_C3HHeJ_G0015275.1 mouse_genomes_project 3 101037753 101049542 + 4930406D18Rik processed_transcript lincRNA MGP_C3HHeJ_T0013811.1 MGP_C3HHeJ_G0011915.1 mouse_genomes_project 3 22412104 22412387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010441.1 MGP_C3HHeJ_G0008574.1 mouse_genomes_project 3 87984245 87984318 - Mir7011 miRNA miRNA MGP_C3HHeJ_T0060110.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532388 33534296 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060111.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532416 33630648 + Atp11b protein_coding processed_transcript MGP_C3HHeJ_T0060112.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532416 33657209 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060113.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33532416 33657214 + MGP_C3HHeJ_P0060113 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0060114.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33588284 33607110 + MGP_C3HHeJ_P0060114 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0060115.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33589775 33657212 + MGP_C3HHeJ_P0060115 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0060116.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33607983 33610423 + Atp11b protein_coding processed_transcript MGP_C3HHeJ_T0060117.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33628003 33630149 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060118.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33639695 33657209 + Atp11b protein_coding retained_intron MGP_C3HHeJ_T0060119.1 MGP_C3HHeJ_G0026866.1 mouse_genomes_project 3 33640028 33657214 + MGP_C3HHeJ_P0060119 Atp11b protein_coding protein_coding MGP_C3HHeJ_T0007608.1 MGP_C3HHeJ_G0006216.1 mouse_genomes_project 3 127819625 127821648 + Gm42827 lincRNA lincRNA MGP_C3HHeJ_T0007601.1 MGP_C3HHeJ_G0006211.1 mouse_genomes_project 3 123231386 123232204 - Gm43607 lincRNA lincRNA MGP_C3HHeJ_T0061007.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83502825 83650201 - MGP_C3HHeJ_P0061007 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061008.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83502826 83603835 - MGP_C3HHeJ_P0061008 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061009.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83502827 83564461 - MGP_C3HHeJ_P0061009 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061010.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83504260 83564449 - MGP_C3HHeJ_P0061010 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061011.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83505726 83556340 - MGP_C3HHeJ_P0061011 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061012.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83506096 83564417 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061013.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83506111 83614845 - MGP_C3HHeJ_P0061013 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061015.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83519636 83533356 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061016.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83531218 83564446 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061017.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83533494 83534381 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0061018.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83535043 83650789 - MGP_C3HHeJ_P0061018 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061019.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83535054 83650838 - MGP_C3HHeJ_P0061019 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061020.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83536202 83603392 - MGP_C3HHeJ_P0061020 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061021.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83549983 83564433 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061022.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83551280 83564446 - Trim2 protein_coding retained_intron MGP_C3HHeJ_T0061023.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83551882 83564446 - MGP_C3HHeJ_P0061023 Trim2 protein_coding protein_coding MGP_C3HHeJ_T0061024.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83601668 83603392 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0061025.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83645352 83650133 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0061026.1 MGP_C3HHeJ_G0027057.1 mouse_genomes_project 3 83650237 83652272 - Trim2 protein_coding processed_transcript MGP_C3HHeJ_T0062814.1 MGP_C3HHeJ_G0027468.1 mouse_genomes_project 3 109092718 109133149 - MGP_C3HHeJ_P0062814 Gnai3 protein_coding protein_coding MGP_C3HHeJ_T0013987.1 MGP_C3HHeJ_G0012091.1 mouse_genomes_project 3 80815724 80816509 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007635.1 MGP_C3HHeJ_G0006240.1 mouse_genomes_project 3 138906559 138909871 - Gm43357 lincRNA lincRNA MGP_C3HHeJ_T0013865.1 MGP_C3HHeJ_G0011969.1 mouse_genomes_project 3 42459517 42459926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061027.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83790619 83828532 - MGP_C3HHeJ_P0061027 Fhdc1 protein_coding protein_coding MGP_C3HHeJ_T0061028.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83792459 83827597 - MGP_C3HHeJ_P0061028 Fhdc1 protein_coding protein_coding MGP_C3HHeJ_T0061029.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83792532 83828496 - MGP_C3HHeJ_P0061029 Fhdc1 protein_coding protein_coding MGP_C3HHeJ_T0061030.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83797242 83802118 - Fhdc1 protein_coding retained_intron MGP_C3HHeJ_T0061031.1 MGP_C3HHeJ_G0027059.1 mouse_genomes_project 3 83822612 83827088 - Fhdc1 protein_coding processed_transcript MGP_C3HHeJ_T0101948.1 MGP_C3HHeJ_G0039913.1 mouse_genomes_project 3 62981743 62986084 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007376.1 MGP_C3HHeJ_G0006042.1 mouse_genomes_project 3 10841328 10844019 - Gm2464 lincRNA lincRNA MGP_C3HHeJ_T0013828.1 MGP_C3HHeJ_G0011932.1 mouse_genomes_project 3 31809131 31812866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060982.1 MGP_C3HHeJ_G0027049.1 mouse_genomes_project 3 82311441 82317623 + MGP_C3HHeJ_P0060982 Fga protein_coding protein_coding MGP_C3HHeJ_T0060983.1 MGP_C3HHeJ_G0027049.1 mouse_genomes_project 3 82311580 82318985 + MGP_C3HHeJ_P0060983 Fga protein_coding protein_coding MGP_C3HHeJ_T0010461.1 MGP_C3HHeJ_G0008594.1 mouse_genomes_project 3 119843663 119843736 + Mir137 miRNA miRNA MGP_C3HHeJ_T0007688.1 MGP_C3HHeJ_G0006283.1 mouse_genomes_project 3 153608599 153611751 + Gm43468 lincRNA lincRNA MGP_C3HHeJ_T0004187.1 MGP_C3HHeJ_G0003679.1 mouse_genomes_project 3 78409595 78451740 + 4921511C10Rik antisense antisense MGP_C3HHeJ_T0062196.1 MGP_C3HHeJ_G0027317.1 mouse_genomes_project 3 96515634 96517268 - MGP_C3HHeJ_P0062196 Hist2h4 protein_coding protein_coding MGP_C3HHeJ_T0014089.1 MGP_C3HHeJ_G0012193.1 mouse_genomes_project 3 111458466 111459109 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060773.1 MGP_C3HHeJ_G0026999.1 mouse_genomes_project 3 66308153 66351369 - MGP_C3HHeJ_P0060773 Rarres1 protein_coding protein_coding MGP_C3HHeJ_T0014174.1 MGP_C3HHeJ_G0012278.1 mouse_genomes_project 3 138916835 138917151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099269.1 MGP_C3HHeJ_G0037463.1 mouse_genomes_project 3 85379776 85379840 - Gm27811 snRNA snRNA MGP_C3HHeJ_T0062203.1 MGP_C3HHeJ_G0027322.1 mouse_genomes_project 3 96808164 96812199 + MGP_C3HHeJ_P0062203 Hfe2 protein_coding protein_coding MGP_C3HHeJ_T0061300.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88123083 88135576 + MGP_C3HHeJ_P0061300 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061301.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88123146 88131685 + MGP_C3HHeJ_P0061301 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061302.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131297 88140583 + MGP_C3HHeJ_P0061302 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061303.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131330 88140183 + MGP_C3HHeJ_P0061303 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061304.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131356 88140197 + MGP_C3HHeJ_P0061304 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061305.1 MGP_C3HHeJ_G0027118.1 mouse_genomes_project 3 88131360 88140583 + MGP_C3HHeJ_P0061305 Ssr2 protein_coding protein_coding MGP_C3HHeJ_T0061671.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853033 89862996 + MGP_C3HHeJ_P0061671 Crtc2 protein_coding protein_coding MGP_C3HHeJ_T0061672.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853166 89862991 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061673.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853166 89862991 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061674.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853194 89857504 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061675.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89853211 89862991 + Crtc2 protein_coding processed_transcript MGP_C3HHeJ_T0061676.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89856165 89862991 + MGP_C3HHeJ_P0061676 Crtc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061677.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89856921 89858363 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0061678.1 MGP_C3HHeJ_G0027174.1 mouse_genomes_project 3 89857835 89859192 + Crtc2 protein_coding retained_intron MGP_C3HHeJ_T0059998.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687904 28717436 + MGP_C3HHeJ_P0059998 Skil protein_coding protein_coding MGP_C3HHeJ_T0059999.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687907 28694241 + Skil protein_coding retained_intron MGP_C3HHeJ_T0060000.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687907 28717440 + MGP_C3HHeJ_P0060000 Skil protein_coding protein_coding MGP_C3HHeJ_T0060001.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687911 28690740 + MGP_C3HHeJ_P0060001 Skil protein_coding protein_coding MGP_C3HHeJ_T0060002.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28687971 28714149 + MGP_C3HHeJ_P0060002 Skil protein_coding protein_coding MGP_C3HHeJ_T0060003.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28689680 28713860 + MGP_C3HHeJ_P0060003 Skil protein_coding protein_coding MGP_C3HHeJ_T0060004.1 MGP_C3HHeJ_G0026845.1 mouse_genomes_project 3 28690178 28717443 + MGP_C3HHeJ_P0060004 Skil protein_coding unknown_likely_coding MGP_C3HHeJ_T0011445.1 MGP_C3HHeJ_G0009578.1 mouse_genomes_project 3 72253383 72253682 - Gm22538 misc_RNA misc_RNA MGP_C3HHeJ_T0013809.1 MGP_C3HHeJ_G0011913.1 mouse_genomes_project 3 19886425 19887195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063155.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123582329 123724003 + MGP_C3HHeJ_P0063155 Abca4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063156.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123582402 123724229 + MGP_C3HHeJ_P0063156 Abca4 protein_coding protein_coding MGP_C3HHeJ_T0063157.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123584490 123637839 + Abca4 protein_coding processed_transcript MGP_C3HHeJ_T0063158.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123612830 123627147 + Abca4 protein_coding processed_transcript MGP_C3HHeJ_T0063159.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123660890 123669559 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063160.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123662604 123667369 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063161.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123672903 123724231 + MGP_C3HHeJ_P0063161 Abca4 protein_coding protein_coding MGP_C3HHeJ_T0063162.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123705846 123707849 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063163.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123707347 123713648 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0063164.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123713287 123714315 + Abca4 protein_coding processed_transcript MGP_C3HHeJ_T0063165.1 MGP_C3HHeJ_G0027537.1 mouse_genomes_project 3 123716332 123724293 + Abca4 protein_coding retained_intron MGP_C3HHeJ_T0001155.1 MGP_C3HHeJ_G0001089.1 mouse_genomes_project 3 49696606 49699810 + TEC TEC MGP_C3HHeJ_T0100593.1 MGP_C3HHeJ_G0038787.1 mouse_genomes_project 3 156568836 156568917 - Gm24494 snoRNA snoRNA MGP_C3HHeJ_T0063976.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154833136 154864532 - MGP_C3HHeJ_P0063976 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063977.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154833136 154865083 - MGP_C3HHeJ_P0063977 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063978.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834311 154852037 - MGP_C3HHeJ_P0063978 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063979.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834354 154845005 - MGP_C3HHeJ_P0063979 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063980.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834391 154852037 - MGP_C3HHeJ_P0063980 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063981.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154834992 154841566 - Nexn protein_coding processed_transcript MGP_C3HHeJ_T0063982.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154839480 154840877 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0063983.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154840696 154864533 - MGP_C3HHeJ_P0063983 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063984.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154840752 154852091 - MGP_C3HHeJ_P0063984 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063985.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844761 154845205 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0063986.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844772 154864560 - MGP_C3HHeJ_P0063986 Nexn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063987.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844803 154862271 - MGP_C3HHeJ_P0063987 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063988.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844821 154860300 - MGP_C3HHeJ_P0063988 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063989.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154844923 154861295 - MGP_C3HHeJ_P0063989 Nexn protein_coding protein_coding MGP_C3HHeJ_T0063990.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154849252 154865115 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0063991.1 MGP_C3HHeJ_G0027690.1 mouse_genomes_project 3 154849465 154849834 - Nexn protein_coding retained_intron MGP_C3HHeJ_T0099299.1 MGP_C3HHeJ_G0037493.1 mouse_genomes_project 3 110929118 110929224 + Gm25681 snRNA snRNA MGP_C3HHeJ_T0013742.1 MGP_C3HHeJ_G0011846.1 mouse_genomes_project 3 1518352 1518782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099246.1 MGP_C3HHeJ_G0037440.1 mouse_genomes_project 3 43823875 43824038 + Gm25796 snRNA snRNA MGP_C3HHeJ_T0013981.1 MGP_C3HHeJ_G0012085.1 mouse_genomes_project 3 78046636 78047302 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063787.1 MGP_C3HHeJ_G0027657.1 mouse_genomes_project 3 147276258 147305702 - MGP_C3HHeJ_P0063787 Clca1 protein_coding protein_coding MGP_C3HHeJ_T0063788.1 MGP_C3HHeJ_G0027657.1 mouse_genomes_project 3 147276998 147281615 - Clca1 protein_coding processed_transcript MGP_C3HHeJ_T0063789.1 MGP_C3HHeJ_G0027657.1 mouse_genomes_project 3 147286402 147291969 - Clca1 protein_coding processed_transcript MGP_C3HHeJ_T0100533.1 MGP_C3HHeJ_G0038727.1 mouse_genomes_project 3 44318533 44318665 + Gm26081 snoRNA snoRNA MGP_C3HHeJ_T0099297.1 MGP_C3HHeJ_G0037491.1 mouse_genomes_project 3 105542588 105542678 + Gm24223 snRNA snRNA MGP_C3HHeJ_T0001097.1 MGP_C3HHeJ_G0001031.1 mouse_genomes_project 3 27846974 27849038 - TEC TEC MGP_C3HHeJ_T0098462.1 MGP_C3HHeJ_G0036667.1 mouse_genomes_project 3 121213926 121217166 - Gm42664 sense_intronic sense_intronic MGP_C3HHeJ_T0013816.1 MGP_C3HHeJ_G0011920.1 mouse_genomes_project 3 24761921 24762309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061139.1 MGP_C3HHeJ_G0027084.1 mouse_genomes_project 3 87268728 87285673 - MGP_C3HHeJ_P0061139 Ntrk1 protein_coding protein_coding MGP_C3HHeJ_T0001354.1 MGP_C3HHeJ_G0001285.1 mouse_genomes_project 3 157615871 157619856 + TEC TEC MGP_C3HHeJ_T0064033.1 MGP_C3HHeJ_G0027696.1 mouse_genomes_project 3 155435191 155602925 - MGP_C3HHeJ_P0064033 St6galnac5 protein_coding protein_coding MGP_C3HHeJ_T0064034.1 MGP_C3HHeJ_G0027696.1 mouse_genomes_project 3 155595992 155602731 - St6galnac5 protein_coding processed_transcript MGP_C3HHeJ_T0013844.1 MGP_C3HHeJ_G0011948.1 mouse_genomes_project 3 35174704 35175023 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099247.1 MGP_C3HHeJ_G0037441.1 mouse_genomes_project 3 44015959 44016077 + Gm23337 snRNA snRNA MGP_C3HHeJ_T0014167.1 MGP_C3HHeJ_G0012271.1 mouse_genomes_project 3 137380732 137381061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013989.1 MGP_C3HHeJ_G0012093.1 mouse_genomes_project 3 81926111 81926691 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098457.1 MGP_C3HHeJ_G0036662.1 mouse_genomes_project 3 106595065 106596499 - Gm43328 sense_intronic sense_intronic MGP_C3HHeJ_T0004335.1 MGP_C3HHeJ_G0003776.1 mouse_genomes_project 3 157391663 157394356 - Gm20389 antisense antisense MGP_C3HHeJ_T0001081.1 MGP_C3HHeJ_G0001015.1 mouse_genomes_project 3 8130836 8132518 - TEC TEC MGP_C3HHeJ_T0013756.1 MGP_C3HHeJ_G0011860.1 mouse_genomes_project 3 5894569 5894882 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062018.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457102 95461721 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062019.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457174 95463594 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062020.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457244 95459274 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062021.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95457602 95460615 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062022.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95458701 95471919 + MGP_C3HHeJ_P0062022 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062023.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95458701 95471919 + MGP_C3HHeJ_P0062023 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062024.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95458972 95467560 + Fam63a protein_coding retained_intron MGP_C3HHeJ_T0062025.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95459359 95463594 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062026.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95461596 95463772 + MGP_C3HHeJ_P0062026 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062027.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95461956 95463718 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0062028.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95463705 95471916 + MGP_C3HHeJ_P0062028 Fam63a protein_coding protein_coding MGP_C3HHeJ_T0062029.1 MGP_C3HHeJ_G0027284.1 mouse_genomes_project 3 95467738 95471914 + Fam63a protein_coding processed_transcript MGP_C3HHeJ_T0098455.1 MGP_C3HHeJ_G0036660.1 mouse_genomes_project 3 105812529 105814355 - sense_intronic sense_intronic MGP_C3HHeJ_T0062342.1 MGP_C3HHeJ_G0027357.1 mouse_genomes_project 3 98840966 98847798 - MGP_C3HHeJ_P0062342 protein_coding protein_coding MGP_C3HHeJ_T0060960.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81338869 81392913 - MGP_C3HHeJ_P0060960 Gucy1a3 protein_coding protein_coding MGP_C3HHeJ_T0060961.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81338879 81393627 - MGP_C3HHeJ_P0060961 Gucy1a3 protein_coding protein_coding MGP_C3HHeJ_T0060962.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81341007 81348478 - MGP_C3HHeJ_P0060962 Gucy1a3 protein_coding protein_coding MGP_C3HHeJ_T0060963.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81353176 81393629 - Gucy1a3 protein_coding retained_intron MGP_C3HHeJ_T0060964.1 MGP_C3HHeJ_G0027043.1 mouse_genomes_project 3 81365551 81393445 - Gucy1a3 protein_coding processed_transcript MGP_C3HHeJ_T0063877.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148932703 148992534 + MGP_C3HHeJ_P0063877 Uox protein_coding protein_coding MGP_C3HHeJ_T0063880.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961819 148998929 + MGP_C3HHeJ_P0063880 Uox protein_coding protein_coding MGP_C3HHeJ_T0063881.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961890 148977074 + MGP_C3HHeJ_P0063881 Uox protein_coding protein_coding MGP_C3HHeJ_T0063882.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961907 148997269 + MGP_C3HHeJ_P0063882 Uox protein_coding protein_coding MGP_C3HHeJ_T0063883.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148961908 148977192 + Uox protein_coding retained_intron MGP_C3HHeJ_T0063884.1 MGP_C3HHeJ_G0027676.1 mouse_genomes_project 3 148974733 148977097 + Uox protein_coding retained_intron MGP_C3HHeJ_T0061380.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88610243 88616320 - MGP_C3HHeJ_P0061380 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061381.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88610243 88619565 - MGP_C3HHeJ_P0061381 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061382.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88610243 88619586 - MGP_C3HHeJ_P0061382 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061383.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88613395 88616016 - Rusc1 protein_coding retained_intron MGP_C3HHeJ_T0061384.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88614495 88616250 - MGP_C3HHeJ_P0061384 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0061385.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88615329 88616030 - Rusc1 protein_coding retained_intron MGP_C3HHeJ_T0061386.1 MGP_C3HHeJ_G0027129.1 mouse_genomes_project 3 88615513 88616250 - MGP_C3HHeJ_P0061386 Rusc1 protein_coding protein_coding MGP_C3HHeJ_T0063613.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911279 139921016 + MGP_C3HHeJ_P0063613 Lamtor3 protein_coding protein_coding MGP_C3HHeJ_T0063614.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911299 139912288 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0063615.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911299 139921558 + MGP_C3HHeJ_P0063615 Lamtor3 protein_coding protein_coding MGP_C3HHeJ_T0063616.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911335 139921037 + Lamtor3 protein_coding processed_transcript MGP_C3HHeJ_T0063617.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911345 139919613 + MGP_C3HHeJ_P0063617 Lamtor3 protein_coding protein_coding MGP_C3HHeJ_T0063618.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139911617 139919898 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0063619.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139917595 139920952 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0063620.1 MGP_C3HHeJ_G0027618.1 mouse_genomes_project 3 139918975 139921693 + Lamtor3 protein_coding retained_intron MGP_C3HHeJ_T0013870.1 MGP_C3HHeJ_G0011974.1 mouse_genomes_project 3 44446257 44446976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060615.1 MGP_C3HHeJ_G0026961.1 mouse_genomes_project 3 57659977 57662968 - MGP_C3HHeJ_P0060615 P2ry13 protein_coding protein_coding MGP_C3HHeJ_T0004231.1 MGP_C3HHeJ_G0003708.1 mouse_genomes_project 3 96493834 96498041 - Gm20633 antisense antisense MGP_C3HHeJ_T0060209.1 MGP_C3HHeJ_G0026881.1 mouse_genomes_project 3 34964407 34971450 - MGP_C3HHeJ_P0060209 Il2 protein_coding protein_coding MGP_C3HHeJ_T0060990.1 MGP_C3HHeJ_G0027052.1 mouse_genomes_project 3 82421254 82648729 + MGP_C3HHeJ_P0060990 Dchs2 protein_coding protein_coding MGP_C3HHeJ_T0063195.1 MGP_C3HHeJ_G0027544.1 mouse_genomes_project 3 124502135 124508426 - MGP_C3HHeJ_P0063195 Gm10959 protein_coding protein_coding MGP_C3HHeJ_T0007428.1 MGP_C3HHeJ_G0006083.1 mouse_genomes_project 3 35950089 35977933 - Gm43821 lincRNA lincRNA MGP_C3HHeJ_T0062826.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109192511 109201224 - MGP_C3HHeJ_P0062826 Atxn7l2 protein_coding protein_coding MGP_C3HHeJ_T0062827.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109192517 109198864 - Atxn7l2 protein_coding retained_intron MGP_C3HHeJ_T0062828.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109192648 109200731 - MGP_C3HHeJ_P0062828 Atxn7l2 protein_coding protein_coding MGP_C3HHeJ_T0062829.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109197371 109199861 - MGP_C3HHeJ_P0062829 Atxn7l2 protein_coding protein_coding MGP_C3HHeJ_T0062830.1 MGP_C3HHeJ_G0027472.1 mouse_genomes_project 3 109199265 109200758 - Atxn7l2 protein_coding processed_transcript MGP_C3HHeJ_T0001244.1 MGP_C3HHeJ_G0001176.1 mouse_genomes_project 3 105548489 105552807 + TEC TEC MGP_C3HHeJ_T0013936.1 MGP_C3HHeJ_G0012040.1 mouse_genomes_project 3 65021730 65021883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063790.1 MGP_C3HHeJ_G0027658.1 mouse_genomes_project 3 147341765 147370598 - MGP_C3HHeJ_P0063790 Clca2 protein_coding protein_coding MGP_C3HHeJ_T0063791.1 MGP_C3HHeJ_G0027658.1 mouse_genomes_project 3 147343259 147370600 - MGP_C3HHeJ_P0063791 Clca2 protein_coding protein_coding MGP_C3HHeJ_T0063792.1 MGP_C3HHeJ_G0027658.1 mouse_genomes_project 3 147370337 147370937 - Clca2 protein_coding processed_transcript MGP_C3HHeJ_T0001115.1 MGP_C3HHeJ_G0001049.1 mouse_genomes_project 3 33770567 33773210 - TEC TEC MGP_C3HHeJ_T0099322.1 MGP_C3HHeJ_G0037516.1 mouse_genomes_project 3 160185720 160185827 - Gm23379 snRNA snRNA MGP_C3HHeJ_T0011720.1 MGP_C3HHeJ_G0009841.1 mouse_genomes_project 3 92223127 92224442 + MGP_C3HHeJ_P0011720 Sprr2g polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0001096.1 MGP_C3HHeJ_G0001030.1 mouse_genomes_project 3 27842481 27844596 - TEC TEC MGP_C3HHeJ_T0060550.1 MGP_C3HHeJ_G0026944.1 mouse_genomes_project 3 55792969 55807332 + MGP_C3HHeJ_P0060550 Tm4sf4 protein_coding protein_coding MGP_C3HHeJ_T0098287.1 MGP_C3HHeJ_G0036499.1 mouse_genomes_project 3 67935061 67935410 - Gm22009 scaRNA scaRNA MGP_C3HHeJ_T0063525.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200136 137234979 + MGP_C3HHeJ_P0063525 Slc9b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063526.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200167 137217278 + Slc9b2 protein_coding retained_intron MGP_C3HHeJ_T0063527.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200178 137210810 + MGP_C3HHeJ_P0063527 Slc9b2 protein_coding protein_coding MGP_C3HHeJ_T0063528.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137200181 137238474 + MGP_C3HHeJ_P0063528 Slc9b2 protein_coding protein_coding MGP_C3HHeJ_T0063529.1 MGP_C3HHeJ_G0027604.1 mouse_genomes_project 3 137222749 137235211 + Slc9b2 protein_coding retained_intron MGP_C3HHeJ_T0001300.1 MGP_C3HHeJ_G0001232.1 mouse_genomes_project 3 129049571 129052792 - TEC TEC MGP_C3HHeJ_T0007642.1 MGP_C3HHeJ_G0006247.1 mouse_genomes_project 3 140731134 140747227 - 4930425O10Rik lincRNA lincRNA MGP_C3HHeJ_T0013779.1 MGP_C3HHeJ_G0011883.1 mouse_genomes_project 3 11807490 11807969 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063134.1 MGP_C3HHeJ_G0027533.1 mouse_genomes_project 3 123190631 123202754 + MGP_C3HHeJ_P0063134 4930432M17Rik protein_coding protein_coding MGP_C3HHeJ_T0063135.1 MGP_C3HHeJ_G0027533.1 mouse_genomes_project 3 123191186 123202607 + MGP_C3HHeJ_P0063135 4930432M17Rik protein_coding protein_coding MGP_C3HHeJ_T0001152.1 MGP_C3HHeJ_G0001086.1 mouse_genomes_project 3 49487449 49487865 - TEC TEC MGP_C3HHeJ_T0013744.1 MGP_C3HHeJ_G0011848.1 mouse_genomes_project 3 3306365 3306867 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007612.1 MGP_C3HHeJ_G0006220.1 mouse_genomes_project 3 130333722 130605098 + lincRNA lincRNA MGP_C3HHeJ_T0101950.1 MGP_C3HHeJ_G0039915.1 mouse_genomes_project 3 69500082 69501117 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0060441.1 MGP_C3HHeJ_G0026924.1 mouse_genomes_project 3 52143821 52144010 + MGP_C3HHeJ_P0060441 Gm10985 protein_coding protein_coding MGP_C3HHeJ_T0061746.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90184267 90210053 + S100a3 protein_coding processed_transcript MGP_C3HHeJ_T0061747.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90209386 90226872 + MGP_C3HHeJ_P0061747 S100a3 protein_coding protein_coding MGP_C3HHeJ_T0061748.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90211679 90226918 + MGP_C3HHeJ_P0061748 S100a3 protein_coding protein_coding MGP_C3HHeJ_T0061750.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90224608 90227096 + MGP_C3HHeJ_P0061750 S100a3 protein_coding protein_coding MGP_C3HHeJ_T0061751.1 MGP_C3HHeJ_G0027187.1 mouse_genomes_project 3 90224638 90227096 + S100a3 protein_coding retained_intron MGP_C3HHeJ_T0061722.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113814 90124957 - MGP_C3HHeJ_P0061722 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061723.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113814 90124956 - MGP_C3HHeJ_P0061723 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061724.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113814 90124955 - MGP_C3HHeJ_P0061724 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061725.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113816 90124967 - MGP_C3HHeJ_P0061725 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061726.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90113823 90125003 - MGP_C3HHeJ_P0061726 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061727.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90114352 90124979 - MGP_C3HHeJ_P0061727 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061728.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90114553 90124990 - MGP_C3HHeJ_P0061728 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061729.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90117016 90124981 - MGP_C3HHeJ_P0061729 Chtop protein_coding protein_coding MGP_C3HHeJ_T0061730.1 MGP_C3HHeJ_G0027182.1 mouse_genomes_project 3 90117989 90124527 - MGP_C3HHeJ_P0061730 Chtop protein_coding protein_coding MGP_C3HHeJ_T0001122.1 MGP_C3HHeJ_G0001056.1 mouse_genomes_project 3 35563550 35566678 + TEC TEC MGP_C3HHeJ_T0061801.1 MGP_C3HHeJ_G0027226.1 mouse_genomes_project 3 92564185 92565859 - MGP_C3HHeJ_P0061801 Lce1e protein_coding protein_coding MGP_C3HHeJ_T0101182.1 MGP_C3HHeJ_G0039330.1 mouse_genomes_project 3 11992874 11993154 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0061174.1 MGP_C3HHeJ_G0027093.1 mouse_genomes_project 3 87483296 87485610 + Nes protein_coding retained_intron MGP_C3HHeJ_T0061175.1 MGP_C3HHeJ_G0027093.1 mouse_genomes_project 3 87483311 87492939 + MGP_C3HHeJ_P0061175 Nes protein_coding protein_coding MGP_C3HHeJ_T0061176.1 MGP_C3HHeJ_G0027093.1 mouse_genomes_project 3 87483347 87492939 + MGP_C3HHeJ_P0061176 Nes protein_coding protein_coding MGP_C3HHeJ_T0007540.1 MGP_C3HHeJ_G0006162.1 mouse_genomes_project 3 96091555 96098287 + Gm26594 lincRNA lincRNA MGP_C3HHeJ_T0007600.1 MGP_C3HHeJ_G0006210.1 mouse_genomes_project 3 123220555 123230022 - Gm43608 lincRNA lincRNA MGP_C3HHeJ_T0060350.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44477035 44483058 - MGP_C3HHeJ_P0060350 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0060351.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44477035 44482780 - MGP_C3HHeJ_P0060351 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0060352.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44481530 44482780 - MGP_C3HHeJ_P0060352 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0060353.1 MGP_C3HHeJ_G0026905.1 mouse_genomes_project 3 44481894 44482759 - MGP_C3HHeJ_P0060353 Pabpc4l protein_coding protein_coding MGP_C3HHeJ_T0013937.1 MGP_C3HHeJ_G0012041.1 mouse_genomes_project 3 65387788 65388601 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061414.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88711975 88717341 + MGP_C3HHeJ_P0061414 Scamp3 protein_coding protein_coding MGP_C3HHeJ_T0061415.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88711992 88717341 + MGP_C3HHeJ_P0061415 Scamp3 protein_coding protein_coding MGP_C3HHeJ_T0061416.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88711998 88714168 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061417.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712022 88717339 + MGP_C3HHeJ_P0061417 Scamp3 protein_coding protein_coding MGP_C3HHeJ_T0061418.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712033 88713955 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061419.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712039 88714167 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061420.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712123 88715852 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0061421.1 MGP_C3HHeJ_G0027134.1 mouse_genomes_project 3 88712260 88714888 + Scamp3 protein_coding retained_intron MGP_C3HHeJ_T0013848.1 MGP_C3HHeJ_G0011952.1 mouse_genomes_project 3 35817072 35817548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061172.1 MGP_C3HHeJ_G0027092.1 mouse_genomes_project 3 87455622 87460319 + MGP_C3HHeJ_P0061172 Crabp2 protein_coding protein_coding MGP_C3HHeJ_T0061173.1 MGP_C3HHeJ_G0027092.1 mouse_genomes_project 3 87459086 87459928 + Crabp2 protein_coding retained_intron MGP_C3HHeJ_T0004322.1 MGP_C3HHeJ_G0003766.1 mouse_genomes_project 3 144856659 144857679 - Gm15540 antisense antisense MGP_C3HHeJ_T0001186.1 MGP_C3HHeJ_G0001118.1 mouse_genomes_project 3 54472231 54475235 - TEC TEC MGP_C3HHeJ_T0061403.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698543 88711424 + MGP_C3HHeJ_P0061403 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061404.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698565 88700953 + MGP_C3HHeJ_P0061404 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061405.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698566 88711424 + MGP_C3HHeJ_P0061405 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061406.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698567 88711422 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061407.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698567 88707960 + MGP_C3HHeJ_P0061407 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061408.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698588 88711424 + MGP_C3HHeJ_P0061408 Clk2 protein_coding protein_coding MGP_C3HHeJ_T0061409.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88698727 88711424 + MGP_C3HHeJ_P0061409 Clk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061410.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88700912 88704151 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061411.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88706667 88710583 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061412.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88708457 88710250 + Clk2 protein_coding retained_intron MGP_C3HHeJ_T0061413.1 MGP_C3HHeJ_G0027133.1 mouse_genomes_project 3 88709537 88710474 + Clk2 protein_coding processed_transcript MGP_C3HHeJ_T0064035.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 155823724 156373200 - MGP_C3HHeJ_P0064035 St6galnac3 protein_coding protein_coding MGP_C3HHeJ_T0064036.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 155830829 155851032 - MGP_C3HHeJ_P0064036 St6galnac3 protein_coding protein_coding MGP_C3HHeJ_T0064037.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 155832080 156373139 - MGP_C3HHeJ_P0064037 St6galnac3 protein_coding protein_coding MGP_C3HHeJ_T0064038.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 156140896 156141762 - St6galnac3 protein_coding retained_intron MGP_C3HHeJ_T0064039.1 MGP_C3HHeJ_G0027697.1 mouse_genomes_project 3 156141151 156369022 - St6galnac3 protein_coding retained_intron MGP_C3HHeJ_T0004278.1 MGP_C3HHeJ_G0003734.1 mouse_genomes_project 3 117390939 117411494 + antisense antisense MGP_C3HHeJ_T0013894.1 MGP_C3HHeJ_G0011998.1 mouse_genomes_project 3 52322106 52322926 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013810.1 MGP_C3HHeJ_G0011914.1 mouse_genomes_project 3 20700348 20700724 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001224.1 MGP_C3HHeJ_G0001156.1 mouse_genomes_project 3 88295928 88296876 - TEC TEC MGP_C3HHeJ_T0001180.1 MGP_C3HHeJ_G0001112.1 mouse_genomes_project 3 52033157 52034759 + TEC TEC MGP_C3HHeJ_T0004259.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108860261 108869463 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004260.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108863282 108869016 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004261.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108864720 108869048 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004262.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866113 108868942 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004263.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866144 108869023 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004264.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866373 108869059 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004265.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866472 108869024 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004266.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866516 108869033 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004267.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866668 108869039 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004268.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866722 108869050 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004269.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108866752 108869013 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0004270.1 MGP_C3HHeJ_G0003727.1 mouse_genomes_project 3 108867378 108869062 - 4933431E20Rik antisense antisense MGP_C3HHeJ_T0014062.1 MGP_C3HHeJ_G0012166.1 mouse_genomes_project 3 103556860 103557268 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013830.1 MGP_C3HHeJ_G0011934.1 mouse_genomes_project 3 33309520 33310439 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013944.1 MGP_C3HHeJ_G0012048.1 mouse_genomes_project 3 67203876 67204457 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060660.1 MGP_C3HHeJ_G0026973.1 mouse_genomes_project 3 59909596 59913298 - MGP_C3HHeJ_P0060660 B430305J03Rik protein_coding protein_coding MGP_C3HHeJ_T0060017.1 MGP_C3HHeJ_G0026852.1 mouse_genomes_project 3 30136484 30156718 - MGP_C3HHeJ_P0060017 Kcnmb3 protein_coding protein_coding MGP_C3HHeJ_T0062329.1 MGP_C3HHeJ_G0027352.1 mouse_genomes_project 3 98526174 98527616 + MGP_C3HHeJ_P0062329 Adam30 protein_coding protein_coding MGP_C3HHeJ_T0062330.1 MGP_C3HHeJ_G0027352.1 mouse_genomes_project 3 98526204 98529714 + MGP_C3HHeJ_P0062330 Adam30 protein_coding protein_coding MGP_C3HHeJ_T0001247.1 MGP_C3HHeJ_G0001179.1 mouse_genomes_project 3 107650882 107655560 + TEC TEC MGP_C3HHeJ_T0061555.1 MGP_C3HHeJ_G0027157.1 mouse_genomes_project 3 89011508 89023489 + MGP_C3HHeJ_P0061555 Pmvk protein_coding protein_coding MGP_C3HHeJ_T0061556.1 MGP_C3HHeJ_G0027157.1 mouse_genomes_project 3 89011547 89023501 + MGP_C3HHeJ_P0061556 Pmvk protein_coding protein_coding MGP_C3HHeJ_T0061557.1 MGP_C3HHeJ_G0027157.1 mouse_genomes_project 3 89011748 89023491 + MGP_C3HHeJ_P0061557 Pmvk protein_coding protein_coding MGP_C3HHeJ_T0004186.1 MGP_C3HHeJ_G0003678.1 mouse_genomes_project 3 64782239 64786518 + Gm37305 antisense antisense MGP_C3HHeJ_T0101417.1 MGP_C3HHeJ_G0039450.1 mouse_genomes_project 3 140337136 140345744 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101418.1 MGP_C3HHeJ_G0039450.1 mouse_genomes_project 3 140339197 140352850 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101419.1 MGP_C3HHeJ_G0039450.1 mouse_genomes_project 3 140347444 140353922 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0007480.1 MGP_C3HHeJ_G0006119.1 mouse_genomes_project 3 66380833 66382918 - Gm35299 lincRNA lincRNA MGP_C3HHeJ_T0014016.1 MGP_C3HHeJ_G0012120.1 mouse_genomes_project 3 92528837 92529465 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014116.1 MGP_C3HHeJ_G0012220.1 mouse_genomes_project 3 121228036 121228210 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100551.1 MGP_C3HHeJ_G0038745.1 mouse_genomes_project 3 85519309 85519431 + Gm25188 snoRNA snoRNA MGP_C3HHeJ_T0001337.1 MGP_C3HHeJ_G0001268.1 mouse_genomes_project 3 149784331 149788821 - TEC TEC MGP_C3HHeJ_T0007650.1 MGP_C3HHeJ_G0006253.1 mouse_genomes_project 3 145136453 145157817 + 4930519L02Rik lincRNA lincRNA MGP_C3HHeJ_T0013955.1 MGP_C3HHeJ_G0012059.1 mouse_genomes_project 3 69001892 69002172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004213.1 MGP_C3HHeJ_G0003697.1 mouse_genomes_project 3 91949941 91956067 + Gm43735 antisense antisense MGP_C3HHeJ_T0099315.1 MGP_C3HHeJ_G0037509.1 mouse_genomes_project 3 148452468 148452621 - Gm25627 snRNA snRNA MGP_C3HHeJ_T0101977.1 MGP_C3HHeJ_G0039942.1 mouse_genomes_project 3 114344187 114357390 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010478.1 MGP_C3HHeJ_G0008611.1 mouse_genomes_project 3 144729651 144729738 - Mir6381 miRNA miRNA MGP_C3HHeJ_T0001275.1 MGP_C3HHeJ_G0001207.1 mouse_genomes_project 3 124585531 124590246 + TEC TEC MGP_C3HHeJ_T0060841.1 MGP_C3HHeJ_G0027016.1 mouse_genomes_project 3 68882225 68906103 + MGP_C3HHeJ_P0060841 Otol1 protein_coding protein_coding MGP_C3HHeJ_T0001126.1 MGP_C3HHeJ_G0001060.1 mouse_genomes_project 3 36306334 36307515 - TEC TEC MGP_C3HHeJ_T0097900.1 MGP_C3HHeJ_G0036112.1 mouse_genomes_project 3 156435791 156435873 + pseudogene pseudogene MGP_C3HHeJ_T0001265.1 MGP_C3HHeJ_G0001197.1 mouse_genomes_project 3 122519378 122520075 - TEC TEC MGP_C3HHeJ_T0059879.1 MGP_C3HHeJ_G0026823.1 mouse_genomes_project 3 24810010 24832039 + MGP_C3HHeJ_P0059879 Tnfsf10 protein_coding protein_coding MGP_C3HHeJ_T0059880.1 MGP_C3HHeJ_G0026823.1 mouse_genomes_project 3 24810043 24834708 + MGP_C3HHeJ_P0059880 Tnfsf10 protein_coding protein_coding MGP_C3HHeJ_T0100595.1 MGP_C3HHeJ_G0038789.1 mouse_genomes_project 3 159984521 159984653 + Gm24373 snoRNA snoRNA MGP_C3HHeJ_T0004198.1 MGP_C3HHeJ_G0003687.1 mouse_genomes_project 3 87701387 87709401 - 1700113A16Rik antisense antisense MGP_C3HHeJ_T0004199.1 MGP_C3HHeJ_G0003687.1 mouse_genomes_project 3 87701387 87709494 - 1700113A16Rik antisense antisense MGP_C3HHeJ_T0004200.1 MGP_C3HHeJ_G0003687.1 mouse_genomes_project 3 87701840 87709415 - 1700113A16Rik antisense antisense MGP_C3HHeJ_T0101952.1 MGP_C3HHeJ_G0039917.1 mouse_genomes_project 3 79408061 79408212 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010465.1 MGP_C3HHeJ_G0008598.1 mouse_genomes_project 3 129213755 129213829 + Mir302b miRNA miRNA MGP_C3HHeJ_T0063049.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117968362 118011069 - MGP_C3HHeJ_P0063049 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0063050.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117968403 117971166 - Slc35a3 protein_coding processed_transcript MGP_C3HHeJ_T0063051.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117975833 118011211 - MGP_C3HHeJ_P0063051 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0063052.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117975968 118011581 - MGP_C3HHeJ_P0063052 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0063053.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117988728 118011626 - Slc35a3 protein_coding retained_intron MGP_C3HHeJ_T0063054.1 MGP_C3HHeJ_G0027518.1 mouse_genomes_project 3 117992521 118012193 - MGP_C3HHeJ_P0063054 Slc35a3 protein_coding protein_coding MGP_C3HHeJ_T0013903.1 MGP_C3HHeJ_G0012007.1 mouse_genomes_project 3 55895243 55895793 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004291.1 MGP_C3HHeJ_G0003744.1 mouse_genomes_project 3 125978563 125980252 + Gm42823 antisense antisense MGP_C3HHeJ_T0004287.1 MGP_C3HHeJ_G0003741.1 mouse_genomes_project 3 124131079 124140760 + Gm43569 antisense antisense MGP_C3HHeJ_T0060612.1 MGP_C3HHeJ_G0026960.1 mouse_genomes_project 3 57631008 57632200 - Gpr87 protein_coding retained_intron MGP_C3HHeJ_T0060613.1 MGP_C3HHeJ_G0026960.1 mouse_genomes_project 3 57631008 57647190 - MGP_C3HHeJ_P0060613 Gpr87 protein_coding protein_coding MGP_C3HHeJ_T0060614.1 MGP_C3HHeJ_G0026960.1 mouse_genomes_project 3 57631091 57632171 - MGP_C3HHeJ_P0060614 Gpr87 protein_coding protein_coding MGP_C3HHeJ_T0060742.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 64882644 65121900 - MGP_C3HHeJ_P0060742 Veph1 protein_coding protein_coding MGP_C3HHeJ_T0060743.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 64885688 64965490 - Veph1 protein_coding processed_transcript MGP_C3HHeJ_T0060744.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 64886156 65049328 - MGP_C3HHeJ_P0060744 Veph1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060747.1 MGP_C3HHeJ_G0026992.1 mouse_genomes_project 3 65075547 65121811 - Veph1 protein_coding retained_intron MGP_C3HHeJ_T0004204.1 MGP_C3HHeJ_G0003691.1 mouse_genomes_project 3 88857514 88860996 + Gm15998 antisense antisense MGP_C3HHeJ_T0062043.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95530503 - Setdb1 protein_coding retained_intron MGP_C3HHeJ_T0062044.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95533012 - MGP_C3HHeJ_P0062044 Setdb1 protein_coding protein_coding MGP_C3HHeJ_T0062045.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95533010 - MGP_C3HHeJ_P0062045 Setdb1 protein_coding protein_coding MGP_C3HHeJ_T0062046.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95498932 95530557 - MGP_C3HHeJ_P0062046 Setdb1 protein_coding protein_coding MGP_C3HHeJ_T0062047.1 MGP_C3HHeJ_G0027287.1 mouse_genomes_project 3 95515197 95530503 - Setdb1 protein_coding retained_intron MGP_C3HHeJ_T0007659.1 MGP_C3HHeJ_G0006261.1 mouse_genomes_project 3 145752712 145774158 + Gm42703 lincRNA lincRNA MGP_C3HHeJ_T0011453.1 MGP_C3HHeJ_G0009586.1 mouse_genomes_project 3 108374035 108374368 - Gm24383 misc_RNA misc_RNA MGP_C3HHeJ_T0010426.1 MGP_C3HHeJ_G0008559.1 mouse_genomes_project 3 34300843 34300907 - Mir7009 miRNA miRNA MGP_C3HHeJ_T0014212.1 MGP_C3HHeJ_G0012316.1 mouse_genomes_project 3 155402303 155404934 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060551.1 MGP_C3HHeJ_G0026945.1 mouse_genomes_project 3 55822487 55944044 - MGP_C3HHeJ_P0060551 Wwtr1 protein_coding protein_coding MGP_C3HHeJ_T0060552.1 MGP_C3HHeJ_G0026945.1 mouse_genomes_project 3 55822620 55944126 - MGP_C3HHeJ_P0060552 Wwtr1 protein_coding protein_coding MGP_C3HHeJ_T0060938.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80082580 80154367 - MGP_C3HHeJ_P0060938 Glrb protein_coding protein_coding MGP_C3HHeJ_T0060939.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80082581 80154321 - MGP_C3HHeJ_P0060939 Glrb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060940.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80083942 80152798 - MGP_C3HHeJ_P0060940 Glrb protein_coding protein_coding MGP_C3HHeJ_T0060941.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80095020 80154235 - MGP_C3HHeJ_P0060941 Glrb protein_coding protein_coding MGP_C3HHeJ_T0060942.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80095027 80096647 - Glrb protein_coding retained_intron MGP_C3HHeJ_T0060943.1 MGP_C3HHeJ_G0027037.1 mouse_genomes_project 3 80101589 80154296 - MGP_C3HHeJ_P0060943 Glrb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060787.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67568477 67576381 + MGP_C3HHeJ_P0060787 Il12a protein_coding protein_coding MGP_C3HHeJ_T0060788.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67569257 67576377 + MGP_C3HHeJ_P0060788 Il12a protein_coding protein_coding MGP_C3HHeJ_T0060789.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67569360 67575925 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0060790.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67571826 67575857 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0060791.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67571854 67576379 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0060792.1 MGP_C3HHeJ_G0027004.1 mouse_genomes_project 3 67571854 67576381 + Il12a protein_coding retained_intron MGP_C3HHeJ_T0007577.1 MGP_C3HHeJ_G0006193.1 mouse_genomes_project 3 108996798 109007205 - Gm12498 lincRNA lincRNA MGP_C3HHeJ_T0098450.1 MGP_C3HHeJ_G0036655.1 mouse_genomes_project 3 105341678 105344225 - sense_intronic sense_intronic MGP_C3HHeJ_T0059746.1 MGP_C3HHeJ_G0026791.1 mouse_genomes_project 3 12280959 12283039 + Car3 protein_coding retained_intron MGP_C3HHeJ_T0059747.1 MGP_C3HHeJ_G0026791.1 mouse_genomes_project 3 12280985 12290028 + MGP_C3HHeJ_P0059747 Car3 protein_coding protein_coding MGP_C3HHeJ_T0059748.1 MGP_C3HHeJ_G0026791.1 mouse_genomes_project 3 12286667 12289576 + Car3 protein_coding retained_intron MGP_C3HHeJ_T0063720.1 MGP_C3HHeJ_G0027641.1 mouse_genomes_project 3 144621694 144642699 + MGP_C3HHeJ_P0063720 Gbp7 protein_coding protein_coding MGP_C3HHeJ_T0063721.1 MGP_C3HHeJ_G0027641.1 mouse_genomes_project 3 144621694 144639602 + MGP_C3HHeJ_P0063721 Gbp7 protein_coding protein_coding MGP_C3HHeJ_T0062250.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97017121 97033298 - MGP_C3HHeJ_P0062250 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0062251.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97017154 97033111 - MGP_C3HHeJ_P0062251 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0062252.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97022083 97029211 - MGP_C3HHeJ_P0062252 Polr3c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062253.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97024113 97033146 - Polr3c protein_coding retained_intron MGP_C3HHeJ_T0062254.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97028811 97033124 - MGP_C3HHeJ_P0062254 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0062255.1 MGP_C3HHeJ_G0027335.1 mouse_genomes_project 3 97028814 97033145 - MGP_C3HHeJ_P0062255 Polr3c protein_coding protein_coding MGP_C3HHeJ_T0060626.1 MGP_C3HHeJ_G0026964.1 mouse_genomes_project 3 58189088 58212903 + MGP_C3HHeJ_P0060626 Gm5538 protein_coding protein_coding MGP_C3HHeJ_T0060138.1 MGP_C3HHeJ_G0026869.1 mouse_genomes_project 3 33809918 33861111 - MGP_C3HHeJ_P0060138 Ccdc144b protein_coding protein_coding MGP_C3HHeJ_T0060139.1 MGP_C3HHeJ_G0026869.1 mouse_genomes_project 3 33815556 33861096 - MGP_C3HHeJ_P0060139 Ccdc144b protein_coding protein_coding MGP_C3HHeJ_T0060140.1 MGP_C3HHeJ_G0026869.1 mouse_genomes_project 3 33819950 33861096 - MGP_C3HHeJ_P0060140 Ccdc144b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098406.1 MGP_C3HHeJ_G0036612.1 mouse_genomes_project 3 78884561 78888064 - Gm26984 sense_intronic sense_intronic MGP_C3HHeJ_T0063390.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131659613 131678125 + MGP_C3HHeJ_P0063390 Pla2g12a protein_coding protein_coding MGP_C3HHeJ_T0063391.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131659821 131677239 + MGP_C3HHeJ_P0063391 Pla2g12a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063392.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131662642 131677257 + MGP_C3HHeJ_P0063392 Pla2g12a protein_coding protein_coding MGP_C3HHeJ_T0063393.1 MGP_C3HHeJ_G0027576.1 mouse_genomes_project 3 131675129 131678121 + Pla2g12a protein_coding retained_intron MGP_C3HHeJ_T0100594.1 MGP_C3HHeJ_G0038788.1 mouse_genomes_project 3 156569351 156569431 - Snord45c snoRNA snoRNA MGP_C3HHeJ_T0098422.1 MGP_C3HHeJ_G0036627.1 mouse_genomes_project 3 101732782 101736652 - Gm43465 sense_intronic sense_intronic MGP_C3HHeJ_T0017737.1 MGP_C3HHeJ_G0015268.1 mouse_genomes_project 3 81158687 81165016 - Gm9989 processed_transcript lincRNA MGP_C3HHeJ_T0017738.1 MGP_C3HHeJ_G0015268.1 mouse_genomes_project 3 81161885 81165081 - Gm9989 processed_transcript retained_intron MGP_C3HHeJ_T0014145.1 MGP_C3HHeJ_G0012249.1 mouse_genomes_project 3 131874470 131874821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014013.1 MGP_C3HHeJ_G0012117.1 mouse_genomes_project 3 92168725 92168862 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014218.1 MGP_C3HHeJ_G0012322.1 mouse_genomes_project 3 158994861 158995327 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014078.1 MGP_C3HHeJ_G0012182.1 mouse_genomes_project 3 108838790 108840102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060727.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782681 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060728.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782731 - MGP_C3HHeJ_P0060728 Ccnl1 protein_coding protein_coding MGP_C3HHeJ_T0060729.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782644 - MGP_C3HHeJ_P0060729 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060730.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770632 64782651 - MGP_C3HHeJ_P0060730 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060731.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770676 64782514 - MGP_C3HHeJ_P0060731 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060732.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64770990 64782645 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060733.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64771263 64772480 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060734.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64772435 64781338 - MGP_C3HHeJ_P0060734 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060735.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64772989 64775460 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060736.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64773373 64782663 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060737.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64774382 64781371 - MGP_C3HHeJ_P0060737 Ccnl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060738.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64774888 64776350 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060739.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64775730 64777475 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060740.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64775915 64782135 - Ccnl1 protein_coding retained_intron MGP_C3HHeJ_T0060741.1 MGP_C3HHeJ_G0026991.1 mouse_genomes_project 3 64779727 64782385 - MGP_C3HHeJ_P0060741 Ccnl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0004179.1 MGP_C3HHeJ_G0003673.1 mouse_genomes_project 3 60876455 60879464 - 9330121J05Rik antisense antisense MGP_C3HHeJ_T0007582.1 MGP_C3HHeJ_G0006198.1 mouse_genomes_project 3 112963899 113184556 + lincRNA lincRNA MGP_C3HHeJ_T0013760.1 MGP_C3HHeJ_G0011864.1 mouse_genomes_project 3 6949787 6950170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001102.1 MGP_C3HHeJ_G0001036.1 mouse_genomes_project 3 29616045 29618992 + TEC TEC MGP_C3HHeJ_T0062862.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109463043 109552486 - MGP_C3HHeJ_P0062862 5330417C22Rik protein_coding protein_coding MGP_C3HHeJ_T0062863.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109465426 109552573 - MGP_C3HHeJ_P0062863 5330417C22Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062864.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109465532 109552577 - MGP_C3HHeJ_P0062864 5330417C22Rik protein_coding protein_coding MGP_C3HHeJ_T0062865.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109470881 109472310 - 5330417C22Rik protein_coding retained_intron MGP_C3HHeJ_T0062866.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109475157 109478077 - 5330417C22Rik protein_coding retained_intron MGP_C3HHeJ_T0062867.1 MGP_C3HHeJ_G0027480.1 mouse_genomes_project 3 109500146 109552497 - 5330417C22Rik protein_coding retained_intron MGP_C3HHeJ_T0098447.1 MGP_C3HHeJ_G0036652.1 mouse_genomes_project 3 105007426 105010514 - Gm43256 sense_intronic sense_intronic MGP_C3HHeJ_T0061799.1 MGP_C3HHeJ_G0027224.1 mouse_genomes_project 3 92543870 92545602 + MGP_C3HHeJ_P0061799 Lce1c protein_coding protein_coding MGP_C3HHeJ_T0062129.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099435 96108313 - MGP_C3HHeJ_P0062129 Mrps21 protein_coding protein_coding MGP_C3HHeJ_T0062130.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099455 96107413 - MGP_C3HHeJ_P0062130 Mrps21 protein_coding protein_coding MGP_C3HHeJ_T0062131.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099457 96100109 - Mrps21 protein_coding processed_transcript MGP_C3HHeJ_T0062132.1 MGP_C3HHeJ_G0027300.1 mouse_genomes_project 3 96099685 96108161 - MGP_C3HHeJ_P0062132 Mrps21 protein_coding protein_coding MGP_C3HHeJ_T0001135.1 MGP_C3HHeJ_G0001069.1 mouse_genomes_project 3 42612857 42616716 + TEC TEC MGP_C3HHeJ_T0007418.1 MGP_C3HHeJ_G0006074.1 mouse_genomes_project 3 33036614 33056628 - Gm43003 lincRNA lincRNA MGP_C3HHeJ_T0014070.1 MGP_C3HHeJ_G0012174.1 mouse_genomes_project 3 105470497 105470840 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007365.1 MGP_C3HHeJ_G0006035.1 mouse_genomes_project 3 6333816 6343968 + 4930539M17Rik lincRNA lincRNA MGP_C3HHeJ_T0059927.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649182 26718567 + MGP_C3HHeJ_P0059927 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059928.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649459 27148849 + MGP_C3HHeJ_P0059928 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059929.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649722 27245137 + Egfem1 protein_coding retained_intron MGP_C3HHeJ_T0059930.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649878 27262758 + MGP_C3HHeJ_P0059930 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059931.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 26649916 27262059 + MGP_C3HHeJ_P0059931 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0059932.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 27031503 27221313 + Egfem1 protein_coding processed_transcript MGP_C3HHeJ_T0059933.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 27079447 27261927 + MGP_C3HHeJ_P0059933 Egfem1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059934.1 MGP_C3HHeJ_G0026833.1 mouse_genomes_project 3 27079472 27244244 + MGP_C3HHeJ_P0059934 Egfem1 protein_coding protein_coding MGP_C3HHeJ_T0099308.1 MGP_C3HHeJ_G0037502.1 mouse_genomes_project 3 134330083 134330189 - Gm25307 snRNA snRNA MGP_C3HHeJ_T0061517.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88931829 - MGP_C3HHeJ_P0061517 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061518.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88937947 - MGP_C3HHeJ_P0061518 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061519.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88936727 - MGP_C3HHeJ_P0061519 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061520.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88922285 88932311 - MGP_C3HHeJ_P0061520 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061521.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88925779 88938256 - MGP_C3HHeJ_P0061521 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061522.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88926063 88938213 - MGP_C3HHeJ_P0061522 Zbtb7b protein_coding protein_coding MGP_C3HHeJ_T0061523.1 MGP_C3HHeJ_G0027150.1 mouse_genomes_project 3 88937170 88939354 - Zbtb7b protein_coding processed_transcript MGP_C3HHeJ_T0001296.1 MGP_C3HHeJ_G0001228.1 mouse_genomes_project 3 128790345 128792897 - TEC TEC MGP_C3HHeJ_T0007578.1 MGP_C3HHeJ_G0006194.1 mouse_genomes_project 3 109154486 109176269 + Gm12524 lincRNA lincRNA MGP_C3HHeJ_T0004295.1 MGP_C3HHeJ_G0003747.1 mouse_genomes_project 3 129223981 129225314 - Gm43729 antisense antisense MGP_C3HHeJ_T0010463.1 MGP_C3HHeJ_G0008596.1 mouse_genomes_project 3 123847230 123847349 - Mir760 miRNA miRNA MGP_C3HHeJ_T0007466.1 MGP_C3HHeJ_G0006110.1 mouse_genomes_project 3 52956398 52959591 + Gm26678 lincRNA lincRNA MGP_C3HHeJ_T0013785.1 MGP_C3HHeJ_G0011889.1 mouse_genomes_project 3 13166589 13167650 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014068.1 MGP_C3HHeJ_G0012172.1 mouse_genomes_project 3 104947394 104948232 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061773.1 MGP_C3HHeJ_G0027201.1 mouse_genomes_project 3 91958878 91960600 - MGP_C3HHeJ_P0061773 Prr9 protein_coding protein_coding MGP_C3HHeJ_T0013965.1 MGP_C3HHeJ_G0012069.1 mouse_genomes_project 3 73001166 73002243 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013840.1 MGP_C3HHeJ_G0011944.1 mouse_genomes_project 3 34921670 34922366 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059752.1 MGP_C3HHeJ_G0026793.1 mouse_genomes_project 3 12717401 12754243 - MGP_C3HHeJ_P0059752 Gm9733 protein_coding protein_coding MGP_C3HHeJ_T0014012.1 MGP_C3HHeJ_G0012116.1 mouse_genomes_project 3 91857670 91858015 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063822.1 MGP_C3HHeJ_G0027662.1 mouse_genomes_project 3 147951091 147954136 - MGP_C3HHeJ_P0063822 Cyr61 protein_coding protein_coding MGP_C3HHeJ_T0010454.1 MGP_C3HHeJ_G0008587.1 mouse_genomes_project 3 98044251 98044305 - Mir7225 miRNA miRNA MGP_C3HHeJ_T0062410.1 MGP_C3HHeJ_G0027377.1 mouse_genomes_project 3 102254707 102283943 - MGP_C3HHeJ_P0062410 Atp1a1 protein_coding protein_coding MGP_C3HHeJ_T0062411.1 MGP_C3HHeJ_G0027377.1 mouse_genomes_project 3 102254804 102256051 - Atp1a1 protein_coding retained_intron MGP_C3HHeJ_T0062412.1 MGP_C3HHeJ_G0027377.1 mouse_genomes_project 3 102264280 102267522 - Atp1a1 protein_coding retained_intron MGP_C3HHeJ_T0063878.1 MGP_C3HHeJ_G0027677.1 mouse_genomes_project 3 148944691 148980348 - MGP_C3HHeJ_P0063878 Dnase2b protein_coding protein_coding MGP_C3HHeJ_T0063879.1 MGP_C3HHeJ_G0027677.1 mouse_genomes_project 3 148944691 148961355 - MGP_C3HHeJ_P0063879 Dnase2b protein_coding protein_coding MGP_C3HHeJ_T0004281.1 MGP_C3HHeJ_G0003737.1 mouse_genomes_project 3 117925086 117925625 + Gm42457 antisense antisense MGP_C3HHeJ_T0013820.1 MGP_C3HHeJ_G0011924.1 mouse_genomes_project 3 27488320 27488759 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013837.1 MGP_C3HHeJ_G0011941.1 mouse_genomes_project 3 34367983 34368682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101961.1 MGP_C3HHeJ_G0039926.1 mouse_genomes_project 3 90486559 90488442 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014077.1 MGP_C3HHeJ_G0012181.1 mouse_genomes_project 3 108748493 108749109 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061187.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563137 87576617 + MGP_C3HHeJ_P0061187 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0061188.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563137 87576614 + MGP_C3HHeJ_P0061188 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0061189.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563138 87575284 + Gpatch4 protein_coding retained_intron MGP_C3HHeJ_T0061190.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563153 87575824 + MGP_C3HHeJ_P0061190 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0061191.1 MGP_C3HHeJ_G0027096.1 mouse_genomes_project 3 87563157 87576600 + MGP_C3HHeJ_P0061191 Gpatch4 protein_coding protein_coding MGP_C3HHeJ_T0101975.1 MGP_C3HHeJ_G0039940.1 mouse_genomes_project 3 108927157 108929484 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014086.1 MGP_C3HHeJ_G0012190.1 mouse_genomes_project 3 110241135 110242000 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013911.1 MGP_C3HHeJ_G0012015.1 mouse_genomes_project 3 57078503 57080307 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062369.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100732391 100757545 - MGP_C3HHeJ_P0062369 Wdr3 protein_coding protein_coding MGP_C3HHeJ_T0062370.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100732946 100735833 - Wdr3 protein_coding retained_intron MGP_C3HHeJ_T0062371.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100736710 100757545 - Wdr3 protein_coding retained_intron MGP_C3HHeJ_T0062372.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100736712 100737794 - Wdr3 protein_coding retained_intron MGP_C3HHeJ_T0062373.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100751546 100757535 - MGP_C3HHeJ_P0062373 Wdr3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062374.1 MGP_C3HHeJ_G0027366.1 mouse_genomes_project 3 100751546 100757470 - MGP_C3HHeJ_P0062374 Wdr3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001340.1 MGP_C3HHeJ_G0001271.1 mouse_genomes_project 3 153629089 153633517 - TEC TEC MGP_C3HHeJ_T0001199.1 MGP_C3HHeJ_G0001131.1 mouse_genomes_project 3 64307930 64308879 - TEC TEC MGP_C3HHeJ_T0061363.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438685 88440594 - Dap3 protein_coding retained_intron MGP_C3HHeJ_T0061364.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438685 88464838 - MGP_C3HHeJ_P0061364 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061365.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438812 88446037 - MGP_C3HHeJ_P0061365 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061366.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438848 88446070 - MGP_C3HHeJ_P0061366 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061367.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88438878 88464757 - MGP_C3HHeJ_P0061367 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061368.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88443525 88465185 - MGP_C3HHeJ_P0061368 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061369.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88443559 88465999 - MGP_C3HHeJ_P0061369 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061370.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88444494 88465158 - MGP_C3HHeJ_P0061370 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061371.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88444542 88464793 - MGP_C3HHeJ_P0061371 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061372.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88448482 88453401 - MGP_C3HHeJ_P0061372 Dap3 protein_coding protein_coding MGP_C3HHeJ_T0061373.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88463939 88465928 - Dap3 protein_coding processed_transcript MGP_C3HHeJ_T0061375.1 MGP_C3HHeJ_G0027126.1 mouse_genomes_project 3 88465534 88466000 - Dap3 protein_coding processed_transcript MGP_C3HHeJ_T0013861.1 MGP_C3HHeJ_G0011965.1 mouse_genomes_project 3 40503725 40504212 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014135.1 MGP_C3HHeJ_G0012239.1 mouse_genomes_project 3 126142978 126145615 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013866.1 MGP_C3HHeJ_G0011970.1 mouse_genomes_project 3 42669324 42669712 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060991.1 MGP_C3HHeJ_G0027053.1 mouse_genomes_project 3 83075448 83083441 + MGP_C3HHeJ_P0060991 Sfrp2 protein_coding protein_coding MGP_C3HHeJ_T0060992.1 MGP_C3HHeJ_G0027053.1 mouse_genomes_project 3 83075692 83079271 + Sfrp2 protein_coding processed_transcript MGP_C3HHeJ_T0060993.1 MGP_C3HHeJ_G0027053.1 mouse_genomes_project 3 83075980 83081281 + Sfrp2 protein_coding processed_transcript MGP_C3HHeJ_T0061153.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87425984 87430164 + MGP_C3HHeJ_P0061153 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061154.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87425984 87430154 + MGP_C3HHeJ_P0061154 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061155.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87426014 87428544 + MGP_C3HHeJ_P0061155 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061156.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87426035 87427000 + Mrpl24 protein_coding retained_intron MGP_C3HHeJ_T0061157.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87426041 87430164 + MGP_C3HHeJ_P0061157 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0061158.1 MGP_C3HHeJ_G0027089.1 mouse_genomes_project 3 87428139 87430164 + MGP_C3HHeJ_P0061158 Mrpl24 protein_coding protein_coding MGP_C3HHeJ_T0007370.1 MGP_C3HHeJ_G0006038.1 mouse_genomes_project 3 7343958 7346957 - Gm38335 lincRNA lincRNA MGP_C3HHeJ_T0010431.1 MGP_C3HHeJ_G0008564.1 mouse_genomes_project 3 55985702 55985816 + Mir6377 miRNA miRNA MGP_C3HHeJ_T0063742.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144906318 144998683 - MGP_C3HHeJ_P0063742 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063743.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144909127 144998594 - MGP_C3HHeJ_P0063743 Pkn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063744.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144909229 144998337 - MGP_C3HHeJ_P0063744 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063745.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144909229 144998337 - MGP_C3HHeJ_P0063745 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063746.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144915342 144998599 - Pkn2 protein_coding processed_transcript MGP_C3HHeJ_T0063747.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144915424 144918492 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063748.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144920632 144998669 - Pkn2 protein_coding processed_transcript MGP_C3HHeJ_T0063749.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144925989 144937946 - MGP_C3HHeJ_P0063749 Pkn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063750.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144927106 144928930 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063751.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144927900 144945637 - MGP_C3HHeJ_P0063751 Pkn2 protein_coding protein_coding MGP_C3HHeJ_T0063752.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144937656 144945600 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063753.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144946577 144998662 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0063754.1 MGP_C3HHeJ_G0027647.1 mouse_genomes_project 3 144969648 144972441 - Pkn2 protein_coding retained_intron MGP_C3HHeJ_T0010429.1 MGP_C3HHeJ_G0008562.1 mouse_genomes_project 3 44954772 44954887 - Mir6379 miRNA miRNA MGP_C3HHeJ_T0062217.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928575 96932440 + MGP_C3HHeJ_P0062217 Rbm8a protein_coding protein_coding MGP_C3HHeJ_T0062218.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928582 96932440 + MGP_C3HHeJ_P0062218 Rbm8a protein_coding protein_coding MGP_C3HHeJ_T0062219.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928604 96930378 + MGP_C3HHeJ_P0062219 Rbm8a protein_coding protein_coding MGP_C3HHeJ_T0062220.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96928615 96929197 + Rbm8a protein_coding retained_intron MGP_C3HHeJ_T0062221.1 MGP_C3HHeJ_G0027328.1 mouse_genomes_project 3 96929864 96930544 + Rbm8a protein_coding retained_intron MGP_C3HHeJ_T0014152.1 MGP_C3HHeJ_G0012256.1 mouse_genomes_project 3 133209300 133209495 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001369.1 MGP_C3HHeJ_G0001300.1 mouse_genomes_project 3 162653137 162655508 + TEC TEC MGP_C3HHeJ_T0001287.1 MGP_C3HHeJ_G0001219.1 mouse_genomes_project 3 128284901 128287781 + TEC TEC MGP_C3HHeJ_T0062048.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630160 95698296 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062049.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630160 95702241 + MGP_C3HHeJ_P0062049 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062050.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630162 95703914 + MGP_C3HHeJ_P0062050 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062051.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630176 95703911 + MGP_C3HHeJ_P0062051 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062052.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630200 95702245 + MGP_C3HHeJ_P0062052 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062053.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630200 95660011 + MGP_C3HHeJ_P0062053 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062054.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95630291 95699364 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062055.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95665430 95702241 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062056.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95672196 95680071 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0062057.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95674715 95692320 + MGP_C3HHeJ_P0062057 Arnt protein_coding protein_coding MGP_C3HHeJ_T0062058.1 MGP_C3HHeJ_G0027288.1 mouse_genomes_project 3 95696078 95697080 + Arnt protein_coding retained_intron MGP_C3HHeJ_T0004299.1 MGP_C3HHeJ_G0003750.1 mouse_genomes_project 3 131500269 131511661 + Gm42697 antisense antisense MGP_C3HHeJ_T0013737.1 MGP_C3HHeJ_G0011841.1 mouse_genomes_project 3 897293 897692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014170.1 MGP_C3HHeJ_G0012274.1 mouse_genomes_project 3 137893267 137893567 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013978.1 MGP_C3HHeJ_G0012082.1 mouse_genomes_project 3 77272636 77273185 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001282.1 MGP_C3HHeJ_G0001214.1 mouse_genomes_project 3 126778007 126781583 - TEC TEC MGP_C3HHeJ_T0001288.1 MGP_C3HHeJ_G0001220.1 mouse_genomes_project 3 128290870 128291522 + TEC TEC MGP_C3HHeJ_T0063424.1 MGP_C3HHeJ_G0027582.1 mouse_genomes_project 3 132506301 132520480 - MGP_C3HHeJ_P0063424 Ostc protein_coding protein_coding MGP_C3HHeJ_T0063425.1 MGP_C3HHeJ_G0027582.1 mouse_genomes_project 3 132506308 132507009 - Ostc protein_coding retained_intron MGP_C3HHeJ_T0063426.1 MGP_C3HHeJ_G0027582.1 mouse_genomes_project 3 132518752 132520452 - Ostc protein_coding retained_intron MGP_C3HHeJ_T0059691.1 MGP_C3HHeJ_G0026772.1 mouse_genomes_project 3 7334169 7338256 + MGP_C3HHeJ_P0059691 Fabp5 protein_coding protein_coding MGP_C3HHeJ_T0059692.1 MGP_C3HHeJ_G0026772.1 mouse_genomes_project 3 7334226 7337984 + Fabp5 protein_coding retained_intron MGP_C3HHeJ_T0099255.1 MGP_C3HHeJ_G0037449.1 mouse_genomes_project 3 57403822 57403924 + Gm22491 snRNA snRNA MGP_C3HHeJ_T0014166.1 MGP_C3HHeJ_G0012270.1 mouse_genomes_project 3 137098084 137098509 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014014.1 MGP_C3HHeJ_G0012118.1 mouse_genomes_project 3 92174371 92174672 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098419.1 MGP_C3HHeJ_G0036624.1 mouse_genomes_project 3 101245079 101247200 - Gm42869 sense_intronic sense_intronic MGP_C3HHeJ_T0101204.1 MGP_C3HHeJ_G0039341.1 mouse_genomes_project 3 145015457 145015976 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0011450.1 MGP_C3HHeJ_G0009583.1 mouse_genomes_project 3 96674438 96674861 - Terc misc_RNA misc_RNA MGP_C3HHeJ_T0061787.1 MGP_C3HHeJ_G0027214.1 mouse_genomes_project 3 92343502 92345446 - MGP_C3HHeJ_P0061787 Sprr1a protein_coding protein_coding MGP_C3HHeJ_T0098584.1 MGP_C3HHeJ_G0036779.1 mouse_genomes_project 3 157339431 157362871 + Gm38139 sense_overlapping sense_overlapping MGP_C3HHeJ_T0013941.1 MGP_C3HHeJ_G0012045.1 mouse_genomes_project 3 66459488 66460436 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059694.1 MGP_C3HHeJ_G0026774.1 mouse_genomes_project 3 7511698 7529122 - MGP_C3HHeJ_P0059694 Gm37389 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061978.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325342 95329429 + Sema6c protein_coding processed_transcript MGP_C3HHeJ_T0061979.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325379 95329314 + Sema6c protein_coding processed_transcript MGP_C3HHeJ_T0061980.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325379 95338536 + MGP_C3HHeJ_P0061980 Sema6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061981.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325379 95333232 + MGP_C3HHeJ_P0061981 Sema6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061982.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325386 95329368 + MGP_C3HHeJ_P0061982 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061983.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325390 95338907 + Sema6c protein_coding retained_intron MGP_C3HHeJ_T0061984.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325390 95338907 + MGP_C3HHeJ_P0061984 Sema6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061985.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325390 95338907 + MGP_C3HHeJ_P0061985 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061986.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95325519 95338171 + MGP_C3HHeJ_P0061986 Sema6c protein_coding unknown_likely_coding MGP_C3HHeJ_T0061987.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95329192 95338745 + MGP_C3HHeJ_P0061987 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061988.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95329192 95338907 + MGP_C3HHeJ_P0061988 Sema6c protein_coding protein_coding MGP_C3HHeJ_T0061989.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95333097 95335023 + Sema6c protein_coding processed_transcript MGP_C3HHeJ_T0061990.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95335205 95336778 + Sema6c protein_coding retained_intron MGP_C3HHeJ_T0061991.1 MGP_C3HHeJ_G0027277.1 mouse_genomes_project 3 95335687 95336859 + Sema6c protein_coding retained_intron MGP_C3HHeJ_T0061731.1 MGP_C3HHeJ_G0027183.1 mouse_genomes_project 3 90128138 90131497 - MGP_C3HHeJ_P0061731 S100a1 protein_coding protein_coding MGP_C3HHeJ_T0061732.1 MGP_C3HHeJ_G0027183.1 mouse_genomes_project 3 90128141 90131383 - MGP_C3HHeJ_P0061732 S100a1 protein_coding protein_coding MGP_C3HHeJ_T0062074.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844138 95845136 + Ensa protein_coding TEC MGP_C3HHeJ_T0062075.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844156 95851248 + MGP_C3HHeJ_P0062075 Ensa protein_coding protein_coding MGP_C3HHeJ_T0062076.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844165 95851248 + MGP_C3HHeJ_P0062076 Ensa protein_coding protein_coding MGP_C3HHeJ_T0062077.1 MGP_C3HHeJ_G0027293.1 mouse_genomes_project 3 95844171 95846680 + Ensa protein_coding retained_intron MGP_C3HHeJ_T0061482.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810328 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061483.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810331 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061484.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810300 - MGP_C3HHeJ_P0061484 Slc50a1 protein_coding protein_coding MGP_C3HHeJ_T0061485.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810375 - MGP_C3HHeJ_P0061485 Slc50a1 protein_coding protein_coding MGP_C3HHeJ_T0061486.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808050 88810284 - MGP_C3HHeJ_P0061486 Slc50a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061487.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808052 88810330 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061488.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808052 88810374 - Slc50a1 protein_coding retained_intron MGP_C3HHeJ_T0061489.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808875 88810375 - MGP_C3HHeJ_P0061489 Slc50a1 protein_coding protein_coding MGP_C3HHeJ_T0061490.1 MGP_C3HHeJ_G0027143.1 mouse_genomes_project 3 88808949 88810032 - Slc50a1 protein_coding processed_transcript MGP_C3HHeJ_T0014010.1 MGP_C3HHeJ_G0012114.1 mouse_genomes_project 3 90397109 90397941 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062425.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102787676 102846521 + MGP_C3HHeJ_P0062425 Casq2 protein_coding protein_coding MGP_C3HHeJ_T0062426.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102787807 102846521 + MGP_C3HHeJ_P0062426 Casq2 protein_coding protein_coding MGP_C3HHeJ_T0062427.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102787900 102845339 + MGP_C3HHeJ_P0062427 Casq2 protein_coding protein_coding MGP_C3HHeJ_T0062428.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102825527 102845356 + Casq2 protein_coding processed_transcript MGP_C3HHeJ_T0062429.1 MGP_C3HHeJ_G0027381.1 mouse_genomes_project 3 102844058 102845593 + Casq2 protein_coding retained_intron MGP_C3HHeJ_T0007585.1 MGP_C3HHeJ_G0006200.1 mouse_genomes_project 3 117420610 117436487 + Gm26544 lincRNA lincRNA MGP_C3HHeJ_T0013780.1 MGP_C3HHeJ_G0011884.1 mouse_genomes_project 3 11851551 11858060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014163.1 MGP_C3HHeJ_G0012267.1 mouse_genomes_project 3 136862168 136862685 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004309.1 MGP_C3HHeJ_G0003758.1 mouse_genomes_project 3 137831230 137856619 + antisense antisense MGP_C3HHeJ_T0004310.1 MGP_C3HHeJ_G0003758.1 mouse_genomes_project 3 137855849 138103899 + antisense antisense MGP_C3HHeJ_T0100561.1 MGP_C3HHeJ_G0038755.1 mouse_genomes_project 3 95249517 95249602 - Gm24920 snoRNA snoRNA MGP_C3HHeJ_T0100536.1 MGP_C3HHeJ_G0038730.1 mouse_genomes_project 3 49004723 49004858 - Gm24503 snoRNA snoRNA MGP_C3HHeJ_T0061830.1 MGP_C3HHeJ_G0027248.1 mouse_genomes_project 3 93417337 93424182 + MGP_C3HHeJ_P0061830 S100a11 protein_coding protein_coding MGP_C3HHeJ_T0063375.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131581410 131600220 - Rrh protein_coding processed_transcript MGP_C3HHeJ_T0063376.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585657 131600232 - MGP_C3HHeJ_P0063376 Rrh protein_coding protein_coding MGP_C3HHeJ_T0063377.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585660 131600218 - MGP_C3HHeJ_P0063377 Rrh protein_coding protein_coding MGP_C3HHeJ_T0063378.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585886 131600314 - MGP_C3HHeJ_P0063378 Rrh protein_coding protein_coding MGP_C3HHeJ_T0063379.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131585994 131600189 - MGP_C3HHeJ_P0063379 Rrh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063380.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131591691 131600221 - Rrh protein_coding processed_transcript MGP_C3HHeJ_T0063381.1 MGP_C3HHeJ_G0027573.1 mouse_genomes_project 3 131597186 131600185 - Rrh protein_coding retained_intron MGP_C3HHeJ_T0007592.1 MGP_C3HHeJ_G0006207.1 mouse_genomes_project 3 119845123 119846351 + Gm9916 lincRNA lincRNA MGP_C3HHeJ_T0061032.1 MGP_C3HHeJ_G0027060.1 mouse_genomes_project 3 83844179 83934046 - MGP_C3HHeJ_P0061032 protein_coding protein_coding MGP_C3HHeJ_T0061034.1 MGP_C3HHeJ_G0027060.1 mouse_genomes_project 3 83845290 83933997 - MGP_C3HHeJ_P0061034 protein_coding protein_coding MGP_C3HHeJ_T0061035.1 MGP_C3HHeJ_G0027060.1 mouse_genomes_project 3 83845822 83934137 - MGP_C3HHeJ_P0061035 protein_coding protein_coding MGP_C3HHeJ_T0014168.1 MGP_C3HHeJ_G0012272.1 mouse_genomes_project 3 137438982 137439833 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010433.1 MGP_C3HHeJ_G0008566.1 mouse_genomes_project 3 67853799 67853863 + Mir15b miRNA miRNA MGP_C3HHeJ_T0061878.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94585047 94667574 - MGP_C3HHeJ_P0061878 Snx27 protein_coding protein_coding MGP_C3HHeJ_T0061879.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94586815 94667407 - MGP_C3HHeJ_P0061879 Snx27 protein_coding protein_coding MGP_C3HHeJ_T0061880.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94588544 94612285 - Snx27 protein_coding processed_transcript MGP_C3HHeJ_T0061881.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94588630 94667537 - MGP_C3HHeJ_P0061881 Snx27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061882.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94588640 94607094 - Snx27 protein_coding processed_transcript MGP_C3HHeJ_T0061883.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94589559 94644582 - MGP_C3HHeJ_P0061883 Snx27 protein_coding protein_coding MGP_C3HHeJ_T0061884.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94607112 94644345 - MGP_C3HHeJ_P0061884 Snx27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061885.1 MGP_C3HHeJ_G0027260.1 mouse_genomes_project 3 94620454 94621103 - Snx27 protein_coding processed_transcript MGP_C3HHeJ_T0098453.1 MGP_C3HHeJ_G0036658.1 mouse_genomes_project 3 105675694 105677190 - Gm42658 sense_intronic sense_intronic MGP_C3HHeJ_T0007581.1 MGP_C3HHeJ_G0006197.1 mouse_genomes_project 3 110119122 110120949 - 4930408K08Rik lincRNA lincRNA MGP_C3HHeJ_T0099236.1 MGP_C3HHeJ_G0037430.1 mouse_genomes_project 3 14077000 14077064 - Gm26485 snRNA snRNA MGP_C3HHeJ_T0011437.1 MGP_C3HHeJ_G0009570.1 mouse_genomes_project 3 22112654 22112920 + Gm24062 misc_RNA misc_RNA MGP_C3HHeJ_T0060702.1 MGP_C3HHeJ_G0026983.1 mouse_genomes_project 3 62748653 62771077 - MGP_C3HHeJ_P0060702 protein_coding protein_coding MGP_C3HHeJ_T0060703.1 MGP_C3HHeJ_G0026983.1 mouse_genomes_project 3 62748653 62781653 - MGP_C3HHeJ_P0060703 protein_coding protein_coding MGP_C3HHeJ_T0064108.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157799955 157809143 + Lrriq3 protein_coding retained_intron MGP_C3HHeJ_T0064109.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157799955 157898584 + MGP_C3HHeJ_P0064109 Lrriq3 protein_coding protein_coding MGP_C3HHeJ_T0064110.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157800059 157886512 + MGP_C3HHeJ_P0064110 Lrriq3 protein_coding protein_coding MGP_C3HHeJ_T0064111.1 MGP_C3HHeJ_G0027709.1 mouse_genomes_project 3 157800109 157844128 + MGP_C3HHeJ_P0064111 Lrriq3 protein_coding protein_coding MGP_C3HHeJ_T0001308.1 MGP_C3HHeJ_G0001239.1 mouse_genomes_project 3 131109978 131111080 + TEC TEC MGP_C3HHeJ_T0060141.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33875126 33903858 + MGP_C3HHeJ_P0060141 Acad9 protein_coding protein_coding MGP_C3HHeJ_T0060142.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33875214 33884804 + MGP_C3HHeJ_P0060142 Acad9 protein_coding protein_coding MGP_C3HHeJ_T0060143.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33875219 33901816 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0060144.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33885552 33889490 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0060145.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33887235 33899602 + MGP_C3HHeJ_P0060145 Acad9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060146.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33888929 33899254 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0060147.1 MGP_C3HHeJ_G0026870.1 mouse_genomes_project 3 33889004 33901816 + Acad9 protein_coding retained_intron MGP_C3HHeJ_T0001280.1 MGP_C3HHeJ_G0001212.1 mouse_genomes_project 3 125955116 125955362 - TEC TEC MGP_C3HHeJ_T0098409.1 MGP_C3HHeJ_G0036614.1 mouse_genomes_project 3 89640042 89640969 + Gm16540 sense_intronic sense_intronic MGP_C3HHeJ_T0017735.1 MGP_C3HHeJ_G0015267.1 mouse_genomes_project 3 50413085 50414470 + Gm38132 processed_transcript lincRNA MGP_C3HHeJ_T0017736.1 MGP_C3HHeJ_G0015267.1 mouse_genomes_project 3 50413114 50414127 + Gm38132 processed_transcript retained_intron MGP_C3HHeJ_T0062788.1 MGP_C3HHeJ_G0027462.1 mouse_genomes_project 3 108940060 108946456 - MGP_C3HHeJ_P0062788 Gstm3 protein_coding protein_coding MGP_C3HHeJ_T0060384.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49596161 49601381 - MGP_C3HHeJ_P0060384 Ndufc1 protein_coding protein_coding MGP_C3HHeJ_T0060385.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49596941 49599874 - Ndufc1 protein_coding retained_intron MGP_C3HHeJ_T0060386.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49596964 49601059 - Ndufc1 protein_coding processed_transcript MGP_C3HHeJ_T0060387.1 MGP_C3HHeJ_G0026911.1 mouse_genomes_project 3 49597068 49601357 - MGP_C3HHeJ_P0060387 Ndufc1 protein_coding protein_coding MGP_C3HHeJ_T0010436.1 MGP_C3HHeJ_G0008569.1 mouse_genomes_project 3 81352613 81352676 - Mir7010 miRNA miRNA MGP_C3HHeJ_T0060323.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39526967 39644561 - MGP_C3HHeJ_P0060323 Sclt1 protein_coding protein_coding MGP_C3HHeJ_T0060324.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39527189 39644075 - MGP_C3HHeJ_P0060324 Sclt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060325.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39527189 39644528 - MGP_C3HHeJ_P0060325 Sclt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060326.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39527353 39530402 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0060327.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39529678 39574698 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0060328.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39558651 39565423 - MGP_C3HHeJ_P0060328 Sclt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060329.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39575206 39619954 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0060330.1 MGP_C3HHeJ_G0026902.1 mouse_genomes_project 3 39643565 39644452 - Sclt1 protein_coding retained_intron MGP_C3HHeJ_T0061379.1 MGP_C3HHeJ_G0027128.1 mouse_genomes_project 3 88608367 88628725 - MGP_C3HHeJ_P0061379 Gm43738 protein_coding protein_coding MGP_C3HHeJ_T0061525.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88947043 88957839 - MGP_C3HHeJ_P0061525 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061526.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88948008 88957832 - MGP_C3HHeJ_P0061526 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061527.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88948706 88957838 - MGP_C3HHeJ_P0061527 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061528.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88954698 88957750 - MGP_C3HHeJ_P0061528 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0061529.1 MGP_C3HHeJ_G0027152.1 mouse_genomes_project 3 88954923 88957839 - MGP_C3HHeJ_P0061529 Flad1 protein_coding protein_coding MGP_C3HHeJ_T0007544.1 MGP_C3HHeJ_G0006165.1 mouse_genomes_project 3 96622927 96636041 - lincRNA lincRNA MGP_C3HHeJ_T0014138.1 MGP_C3HHeJ_G0012242.1 mouse_genomes_project 3 128068062 128068270 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062628.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106310326 106534884 + MGP_C3HHeJ_P0062628 Kcnd3 protein_coding protein_coding MGP_C3HHeJ_T0062629.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106310583 106528470 + Kcnd3 protein_coding retained_intron MGP_C3HHeJ_T0062630.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106314644 106534889 + MGP_C3HHeJ_P0062630 Kcnd3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062631.1 MGP_C3HHeJ_G0027419.1 mouse_genomes_project 3 106529886 106530726 + Kcnd3 protein_coding processed_transcript MGP_C3HHeJ_T0007429.1 MGP_C3HHeJ_G0006084.1 mouse_genomes_project 3 36060280 36065205 - 5430434I15Rik lincRNA lincRNA MGP_C3HHeJ_T0007509.1 MGP_C3HHeJ_G0006143.1 mouse_genomes_project 3 82687701 82690083 + Gm38096 lincRNA lincRNA MGP_C3HHeJ_T0061813.1 MGP_C3HHeJ_G0027238.1 mouse_genomes_project 3 92816267 92817439 + MGP_C3HHeJ_P0061813 protein_coding protein_coding MGP_C3HHeJ_T0064076.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156984850 157014885 - MGP_C3HHeJ_P0064076 Lhx8 protein_coding protein_coding MGP_C3HHeJ_T0064077.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156984852 157014284 - MGP_C3HHeJ_P0064077 Lhx8 protein_coding protein_coding MGP_C3HHeJ_T0064078.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156985534 157012391 - MGP_C3HHeJ_P0064078 Lhx8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064079.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 156999652 157009102 - Lhx8 protein_coding retained_intron MGP_C3HHeJ_T0064080.1 MGP_C3HHeJ_G0027703.1 mouse_genomes_project 3 157005164 157012859 - MGP_C3HHeJ_P0064080 Lhx8 protein_coding protein_coding MGP_C3HHeJ_T0001210.1 MGP_C3HHeJ_G0001142.1 mouse_genomes_project 3 74737359 74741349 + TEC TEC MGP_C3HHeJ_T0061208.1 MGP_C3HHeJ_G0027101.1 mouse_genomes_project 3 87774599 87786435 - MGP_C3HHeJ_P0061208 Rhbg protein_coding protein_coding MGP_C3HHeJ_T0063120.1 MGP_C3HHeJ_G0027530.1 mouse_genomes_project 3 122796957 122826945 + MGP_C3HHeJ_P0063120 Alg14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063121.1 MGP_C3HHeJ_G0027530.1 mouse_genomes_project 3 122797007 122870980 + MGP_C3HHeJ_P0063121 Alg14 protein_coding protein_coding MGP_C3HHeJ_T0063122.1 MGP_C3HHeJ_G0027530.1 mouse_genomes_project 3 122797049 122827407 + MGP_C3HHeJ_P0063122 Alg14 protein_coding protein_coding MGP_C3HHeJ_T0001263.1 MGP_C3HHeJ_G0001195.1 mouse_genomes_project 3 120298561 120300795 + TEC TEC MGP_C3HHeJ_T0013916.1 MGP_C3HHeJ_G0012020.1 mouse_genomes_project 3 58237217 58237618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013846.1 MGP_C3HHeJ_G0011950.1 mouse_genomes_project 3 35450920 35451564 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062413.1 MGP_C3HHeJ_G0027378.1 mouse_genomes_project 3 102500916 102526449 - MGP_C3HHeJ_P0062413 Mab21l3 protein_coding protein_coding MGP_C3HHeJ_T0062414.1 MGP_C3HHeJ_G0027378.1 mouse_genomes_project 3 102501523 102540461 - MGP_C3HHeJ_P0062414 Mab21l3 protein_coding protein_coding MGP_C3HHeJ_T0013948.1 MGP_C3HHeJ_G0012052.1 mouse_genomes_project 3 68297319 68298679 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100580.1 MGP_C3HHeJ_G0038774.1 mouse_genomes_project 3 128654144 128654276 + Gm25501 snoRNA snoRNA MGP_C3HHeJ_T0061904.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95002638 95005507 - MGP_C3HHeJ_P0061904 Psmb4 protein_coding protein_coding MGP_C3HHeJ_T0061905.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95002867 95003389 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0061906.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95003443 95005408 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0061907.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95003462 95005291 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0061908.1 MGP_C3HHeJ_G0027265.1 mouse_genomes_project 3 95003852 95004501 - Psmb4 protein_coding retained_intron MGP_C3HHeJ_T0007549.1 MGP_C3HHeJ_G0006170.1 mouse_genomes_project 3 98258814 98267663 - Gm15999 lincRNA lincRNA MGP_C3HHeJ_T0060015.1 MGP_C3HHeJ_G0026851.1 mouse_genomes_project 3 30095617 30130194 + MGP_C3HHeJ_P0060015 Pik3ca protein_coding protein_coding MGP_C3HHeJ_T0060016.1 MGP_C3HHeJ_G0026851.1 mouse_genomes_project 3 30125044 30126196 + Pik3ca protein_coding retained_intron MGP_C3HHeJ_T0063600.1 MGP_C3HHeJ_G0027615.1 mouse_genomes_project 3 139603127 139606901 + Ddit4l protein_coding processed_transcript MGP_C3HHeJ_T0063601.1 MGP_C3HHeJ_G0027615.1 mouse_genomes_project 3 139605178 139609855 + MGP_C3HHeJ_P0063601 Ddit4l protein_coding protein_coding MGP_C3HHeJ_T0063602.1 MGP_C3HHeJ_G0027615.1 mouse_genomes_project 3 139605543 139607676 + MGP_C3HHeJ_P0063602 Ddit4l protein_coding protein_coding MGP_C3HHeJ_T0098451.1 MGP_C3HHeJ_G0036656.1 mouse_genomes_project 3 105479126 105481979 + Gm43581 sense_intronic sense_intronic MGP_C3HHeJ_T0007546.1 MGP_C3HHeJ_G0006167.1 mouse_genomes_project 3 96659718 96660583 - 4930477E14Rik lincRNA lincRNA MGP_C3HHeJ_T0062632.1 MGP_C3HHeJ_G0027420.1 mouse_genomes_project 3 106539154 106548410 - MGP_C3HHeJ_P0062632 Ddx20 protein_coding protein_coding MGP_C3HHeJ_T0062633.1 MGP_C3HHeJ_G0027420.1 mouse_genomes_project 3 106540504 106548288 - MGP_C3HHeJ_P0062633 Ddx20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062634.1 MGP_C3HHeJ_G0027420.1 mouse_genomes_project 3 106542373 106548280 - Ddx20 protein_coding retained_intron MGP_C3HHeJ_T0013831.1 MGP_C3HHeJ_G0011935.1 mouse_genomes_project 3 33317573 33318009 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001283.1 MGP_C3HHeJ_G0001215.1 mouse_genomes_project 3 128057668 128062965 + TEC TEC MGP_C3HHeJ_T0062380.1 MGP_C3HHeJ_G0027368.1 mouse_genomes_project 3 101063395 101106340 - Fam46c protein_coding processed_transcript MGP_C3HHeJ_T0062381.1 MGP_C3HHeJ_G0027368.1 mouse_genomes_project 3 101063398 101106336 - Fam46c protein_coding processed_transcript MGP_C3HHeJ_T0062382.1 MGP_C3HHeJ_G0027368.1 mouse_genomes_project 3 101080776 101106466 - MGP_C3HHeJ_P0062382 Fam46c protein_coding protein_coding MGP_C3HHeJ_T0061784.1 MGP_C3HHeJ_G0027211.1 mouse_genomes_project 3 92288241 92289585 + MGP_C3HHeJ_P0061784 Sprr2k protein_coding protein_coding MGP_C3HHeJ_T0063693.1 MGP_C3HHeJ_G0027636.1 mouse_genomes_project 3 143276696 143279048 - MGP_C3HHeJ_P0063693 Pdha2 protein_coding protein_coding MGP_C3HHeJ_T0062343.1 MGP_C3HHeJ_G0027358.1 mouse_genomes_project 3 99219237 99233680 - MGP_C3HHeJ_P0062343 Hsd3b2 protein_coding protein_coding MGP_C3HHeJ_T0062344.1 MGP_C3HHeJ_G0027358.1 mouse_genomes_project 3 99220319 99233668 - MGP_C3HHeJ_P0062344 Hsd3b2 protein_coding protein_coding MGP_C3HHeJ_T0062345.1 MGP_C3HHeJ_G0027358.1 mouse_genomes_project 3 99220718 99225733 - MGP_C3HHeJ_P0062345 Hsd3b2 protein_coding protein_coding MGP_C3HHeJ_T0004203.1 MGP_C3HHeJ_G0003690.1 mouse_genomes_project 3 88715257 88716869 - Gm16069 antisense antisense MGP_C3HHeJ_T0059720.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11161323 11521978 + MGP_C3HHeJ_P0059720 Ralyl protein_coding unknown_likely_coding MGP_C3HHeJ_T0059721.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11341433 11590574 + MGP_C3HHeJ_P0059721 Ralyl protein_coding protein_coding MGP_C3HHeJ_T0059722.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11341444 11591430 + MGP_C3HHeJ_P0059722 Ralyl protein_coding protein_coding MGP_C3HHeJ_T0059723.1 MGP_C3HHeJ_G0026784.1 mouse_genomes_project 3 11341451 11591737 + MGP_C3HHeJ_P0059723 Ralyl protein_coding protein_coding MGP_C3HHeJ_T0007534.1 MGP_C3HHeJ_G0006156.1 mouse_genomes_project 3 92014236 92022088 + Gm43740 lincRNA lincRNA MGP_C3HHeJ_T0014098.1 MGP_C3HHeJ_G0012202.1 mouse_genomes_project 3 114207021 114209276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014055.1 MGP_C3HHeJ_G0012159.1 mouse_genomes_project 3 101892524 101892960 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007515.1 MGP_C3HHeJ_G0006149.1 mouse_genomes_project 3 86594805 86599554 + Gm37855 lincRNA lincRNA MGP_C3HHeJ_T0004215.1 MGP_C3HHeJ_G0003699.1 mouse_genomes_project 3 94457675 94467771 - Gm43401 antisense antisense MGP_C3HHeJ_T0013790.1 MGP_C3HHeJ_G0011894.1 mouse_genomes_project 3 14937436 14937776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061278.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88025474 88029934 - Lmna protein_coding retained_intron MGP_C3HHeJ_T0061279.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88026475 88048355 - MGP_C3HHeJ_P0061279 Lmna protein_coding protein_coding MGP_C3HHeJ_T0061280.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88027173 88048357 - Lmna protein_coding processed_transcript MGP_C3HHeJ_T0061281.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88027403 88028191 - Lmna protein_coding retained_intron MGP_C3HHeJ_T0061282.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88028531 88048327 - MGP_C3HHeJ_P0061282 Lmna protein_coding protein_coding MGP_C3HHeJ_T0061283.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88028532 88038430 - MGP_C3HHeJ_P0061283 Lmna protein_coding protein_coding MGP_C3HHeJ_T0061284.1 MGP_C3HHeJ_G0027113.1 mouse_genomes_project 3 88047772 88054907 - MGP_C3HHeJ_P0061284 Lmna protein_coding protein_coding MGP_C3HHeJ_T0063516.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137101591 137164751 + MGP_C3HHeJ_P0063516 protein_coding protein_coding MGP_C3HHeJ_T0063517.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137130981 137135417 + MGP_C3HHeJ_P0063517 protein_coding protein_coding MGP_C3HHeJ_T0063518.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137150381 137150821 + protein_coding retained_intron MGP_C3HHeJ_T0063519.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137151184 137157318 + protein_coding retained_intron MGP_C3HHeJ_T0063520.1 MGP_C3HHeJ_G0027602.1 mouse_genomes_project 3 137161766 137162298 + protein_coding retained_intron MGP_C3HHeJ_T0060510.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53482399 53517706 + MGP_C3HHeJ_P0060510 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060511.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53485089 53516328 + MGP_C3HHeJ_P0060511 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060512.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53485089 53515276 + MGP_C3HHeJ_P0060512 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060513.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53485106 53502136 + MGP_C3HHeJ_P0060513 Ccdc169 protein_coding protein_coding MGP_C3HHeJ_T0060514.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53487339 53516382 + MGP_C3HHeJ_P0060514 Ccdc169 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060515.1 MGP_C3HHeJ_G0026937.1 mouse_genomes_project 3 53487339 53516382 + MGP_C3HHeJ_P0060515 Ccdc169 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013968.1 MGP_C3HHeJ_G0012072.1 mouse_genomes_project 3 73910302 73910927 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013947.1 MGP_C3HHeJ_G0012051.1 mouse_genomes_project 3 68192756 68193015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059963.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28258190 28278822 - MGP_C3HHeJ_P0059963 Lrrc31 protein_coding protein_coding MGP_C3HHeJ_T0059964.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28261931 28278835 - MGP_C3HHeJ_P0059964 Lrrc31 protein_coding protein_coding MGP_C3HHeJ_T0059965.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28276933 28278760 - Lrrc31 protein_coding retained_intron MGP_C3HHeJ_T0059966.1 MGP_C3HHeJ_G0026839.1 mouse_genomes_project 3 28277108 28278802 - Lrrc31 protein_coding processed_transcript MGP_C3HHeJ_T0007443.1 MGP_C3HHeJ_G0006093.1 mouse_genomes_project 3 39373935 39378403 - Platr4 lincRNA lincRNA MGP_C3HHeJ_T0007444.1 MGP_C3HHeJ_G0006093.1 mouse_genomes_project 3 39377605 39383117 - Platr4 lincRNA lincRNA MGP_C3HHeJ_T0007445.1 MGP_C3HHeJ_G0006093.1 mouse_genomes_project 3 39378730 39383119 - Platr4 lincRNA lincRNA MGP_C3HHeJ_T0062030.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95471848 95482525 - MGP_C3HHeJ_P0062030 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062031.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95471848 95482897 - MGP_C3HHeJ_P0062031 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062032.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95472050 95482525 - MGP_C3HHeJ_P0062032 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062033.1 MGP_C3HHeJ_G0027285.1 mouse_genomes_project 3 95481653 95482525 - MGP_C3HHeJ_P0062033 Anxa9 protein_coding protein_coding MGP_C3HHeJ_T0062896.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109765748 109811677 + MGP_C3HHeJ_P0062896 Aknad1 protein_coding protein_coding MGP_C3HHeJ_T0062897.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109770176 109804330 + MGP_C3HHeJ_P0062897 Aknad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062898.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109779294 109790389 + Aknad1 protein_coding retained_intron MGP_C3HHeJ_T0062899.1 MGP_C3HHeJ_G0027487.1 mouse_genomes_project 3 109788506 109804035 + Aknad1 protein_coding retained_intron MGP_C3HHeJ_T0060886.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78253762 78338628 - MGP_C3HHeJ_P0060886 Rapgef2 protein_coding protein_coding MGP_C3HHeJ_T0060887.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78253774 78339528 - MGP_C3HHeJ_P0060887 Rapgef2 protein_coding protein_coding MGP_C3HHeJ_T0060888.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78253777 78485038 - MGP_C3HHeJ_P0060888 Rapgef2 protein_coding protein_coding MGP_C3HHeJ_T0060889.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78302038 78368766 - Rapgef2 protein_coding retained_intron MGP_C3HHeJ_T0060890.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78305128 78368868 - Rapgef2 protein_coding processed_transcript MGP_C3HHeJ_T0060891.1 MGP_C3HHeJ_G0027027.1 mouse_genomes_project 3 78364681 78378130 - Rapgef2 protein_coding retained_intron MGP_C3HHeJ_T0100562.1 MGP_C3HHeJ_G0038756.1 mouse_genomes_project 3 96429477 96429604 + Gm22027 snoRNA snoRNA MGP_C3HHeJ_T0062199.1 MGP_C3HHeJ_G0027320.1 mouse_genomes_project 3 96535024 96545227 - MGP_C3HHeJ_P0062199 Fcgr1 protein_coding protein_coding MGP_C3HHeJ_T0062200.1 MGP_C3HHeJ_G0027320.1 mouse_genomes_project 3 96536646 96544748 - MGP_C3HHeJ_P0062200 Fcgr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100587.1 MGP_C3HHeJ_G0038781.1 mouse_genomes_project 3 146777186 146777314 - Gm24406 snoRNA snoRNA MGP_C3HHeJ_T0060416.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51255064 51291309 - MGP_C3HHeJ_P0060416 Cog6 protein_coding protein_coding MGP_C3HHeJ_T0060417.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51255311 51268790 - Cog6 protein_coding retained_intron MGP_C3HHeJ_T0060418.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51257905 51291288 - MGP_C3HHeJ_P0060418 Cog6 protein_coding protein_coding MGP_C3HHeJ_T0060419.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51266919 51291290 - MGP_C3HHeJ_P0060419 Cog6 protein_coding protein_coding MGP_C3HHeJ_T0060420.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51269887 51291282 - Cog6 protein_coding retained_intron MGP_C3HHeJ_T0060421.1 MGP_C3HHeJ_G0026918.1 mouse_genomes_project 3 51284429 51291284 - Cog6 protein_coding retained_intron MGP_C3HHeJ_T0059767.1 MGP_C3HHeJ_G0026803.1 mouse_genomes_project 3 16438889 16471745 - MGP_C3HHeJ_P0059767 Armc1 protein_coding protein_coding MGP_C3HHeJ_T0014057.1 MGP_C3HHeJ_G0012161.1 mouse_genomes_project 3 101974951 101975381 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010480.1 MGP_C3HHeJ_G0008613.1 mouse_genomes_project 3 153554572 153554643 - Mir3963 miRNA miRNA MGP_C3HHeJ_T0099256.1 MGP_C3HHeJ_G0037450.1 mouse_genomes_project 3 57407039 57407211 - Gm25572 snRNA snRNA MGP_C3HHeJ_T0007572.1 MGP_C3HHeJ_G0006189.1 mouse_genomes_project 3 107762631 107811534 - Gm35507 lincRNA lincRNA MGP_C3HHeJ_T0101958.1 MGP_C3HHeJ_G0039923.1 mouse_genomes_project 3 89541849 89545027 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098123.1 MGP_C3HHeJ_G0036335.1 mouse_genomes_project 3 68564057 68564171 + Gm25621 rRNA rRNA MGP_C3HHeJ_T0001259.1 MGP_C3HHeJ_G0001191.1 mouse_genomes_project 3 118275660 118279632 - TEC TEC MGP_C3HHeJ_T0063941.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682319 154698012 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063942.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682625 154760002 - MGP_C3HHeJ_P0063942 Gipc2 protein_coding protein_coding MGP_C3HHeJ_T0063943.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682627 154696585 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063944.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682668 154696133 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063945.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682805 154692407 - Gipc2 protein_coding retained_intron MGP_C3HHeJ_T0063946.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154682980 154738831 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0063947.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154691426 154697826 - Gipc2 protein_coding retained_intron MGP_C3HHeJ_T0063948.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154718014 154729880 - Gipc2 protein_coding retained_intron MGP_C3HHeJ_T0063949.1 MGP_C3HHeJ_G0027687.1 mouse_genomes_project 3 154720540 154759522 - Gipc2 protein_coding processed_transcript MGP_C3HHeJ_T0011446.1 MGP_C3HHeJ_G0009579.1 mouse_genomes_project 3 78024314 78024657 + Gm24749 misc_RNA misc_RNA MGP_C3HHeJ_T0007689.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153831405 153833921 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007690.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153831441 153833585 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007691.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153831442 153832871 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007692.1 MGP_C3HHeJ_G0006284.1 mouse_genomes_project 3 153832282 153833583 + 4930555A03Rik lincRNA lincRNA MGP_C3HHeJ_T0004315.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140204330 140233388 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0004316.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140211463 140233388 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0004317.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140220222 140233404 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0004318.1 MGP_C3HHeJ_G0003762.1 mouse_genomes_project 3 140222729 140234130 - 0610031O16Rik antisense antisense MGP_C3HHeJ_T0001351.1 MGP_C3HHeJ_G0001282.1 mouse_genomes_project 3 156105775 156106686 - TEC TEC MGP_C3HHeJ_T0014088.1 MGP_C3HHeJ_G0012192.1 mouse_genomes_project 3 111343197 111343534 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001364.1 MGP_C3HHeJ_G0001295.1 mouse_genomes_project 3 160830949 160833420 - TEC TEC MGP_C3HHeJ_T0063786.1 MGP_C3HHeJ_G0027656.1 mouse_genomes_project 3 147170389 147194251 - MGP_C3HHeJ_P0063786 Clca4b protein_coding protein_coding MGP_C3HHeJ_T0098439.1 MGP_C3HHeJ_G0036644.1 mouse_genomes_project 3 104914649 104917086 - Gm42700 sense_intronic sense_intronic MGP_C3HHeJ_T0001207.1 MGP_C3HHeJ_G0001139.1 mouse_genomes_project 3 72079591 72081456 - TEC TEC MGP_C3HHeJ_T0060331.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644609 39660979 + MGP_C3HHeJ_P0060331 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060332.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644657 39658370 + MGP_C3HHeJ_P0060332 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060333.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644660 39660969 + MGP_C3HHeJ_P0060333 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060334.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644663 39661428 + MGP_C3HHeJ_P0060334 D3Ertd751e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060335.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644664 39660978 + MGP_C3HHeJ_P0060335 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060336.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644664 39660978 + MGP_C3HHeJ_P0060336 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060337.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644700 39660978 + MGP_C3HHeJ_P0060337 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060338.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644702 39645967 + D3Ertd751e protein_coding retained_intron MGP_C3HHeJ_T0060339.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644709 39659699 + MGP_C3HHeJ_P0060339 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060340.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39644772 39655823 + MGP_C3HHeJ_P0060340 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060341.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39646716 39658194 + MGP_C3HHeJ_P0060341 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060342.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39648523 39658210 + MGP_C3HHeJ_P0060342 D3Ertd751e protein_coding protein_coding MGP_C3HHeJ_T0060343.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39648753 39660996 + MGP_C3HHeJ_P0060343 D3Ertd751e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060344.1 MGP_C3HHeJ_G0026903.1 mouse_genomes_project 3 39650621 39658545 + D3Ertd751e protein_coding retained_intron MGP_C3HHeJ_T0007652.1 MGP_C3HHeJ_G0006255.1 mouse_genomes_project 3 145373142 145388265 + A830019L24Rik lincRNA lincRNA MGP_C3HHeJ_T0007653.1 MGP_C3HHeJ_G0006255.1 mouse_genomes_project 3 145373617 145390153 + A830019L24Rik lincRNA lincRNA MGP_C3HHeJ_T0063653.1 MGP_C3HHeJ_G0027629.1 mouse_genomes_project 3 140412998 140423871 + Adh4 protein_coding processed_transcript MGP_C3HHeJ_T0063654.1 MGP_C3HHeJ_G0027629.1 mouse_genomes_project 3 140413019 140431727 + MGP_C3HHeJ_P0063654 Adh4 protein_coding protein_coding MGP_C3HHeJ_T0063655.1 MGP_C3HHeJ_G0027629.1 mouse_genomes_project 3 140413027 140439584 + MGP_C3HHeJ_P0063655 Adh4 protein_coding protein_coding MGP_C3HHeJ_T0007607.1 MGP_C3HHeJ_G0006215.1 mouse_genomes_project 3 126403395 126508096 + Gm42825 lincRNA lincRNA MGP_C3HHeJ_T0007563.1 MGP_C3HHeJ_G0006182.1 mouse_genomes_project 3 103313229 103315450 + Gm42678 lincRNA lincRNA MGP_C3HHeJ_T0001172.1 MGP_C3HHeJ_G0001104.1 mouse_genomes_project 3 50294652 50296451 - TEC TEC MGP_C3HHeJ_T0060633.1 MGP_C3HHeJ_G0026969.1 mouse_genomes_project 3 58562133 58567783 + MGP_C3HHeJ_P0060633 Sucnr1 protein_coding protein_coding MGP_C3HHeJ_T0060634.1 MGP_C3HHeJ_G0026969.1 mouse_genomes_project 3 58562166 58566542 + Sucnr1 protein_coding processed_transcript MGP_C3HHeJ_T0017787.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129824810 129936886 - D030025E07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017788.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129831990 129841237 - D030025E07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017789.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129832367 129936889 - D030025E07Rik processed_transcript retained_intron MGP_C3HHeJ_T0017790.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129849741 129936836 - D030025E07Rik processed_transcript retained_intron MGP_C3HHeJ_T0017791.1 MGP_C3HHeJ_G0015287.1 mouse_genomes_project 3 129899061 129936875 - D030025E07Rik processed_transcript lincRNA MGP_C3HHeJ_T0061814.1 MGP_C3HHeJ_G0027239.1 mouse_genomes_project 3 92842120 92843341 + MGP_C3HHeJ_P0061814 Lce3e protein_coding protein_coding MGP_C3HHeJ_T0014203.1 MGP_C3HHeJ_G0012307.1 mouse_genomes_project 3 149065765 149067074 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100529.1 MGP_C3HHeJ_G0038723.1 mouse_genomes_project 3 35659426 35659535 - Gm26404 snoRNA snoRNA MGP_C3HHeJ_T0001214.1 MGP_C3HHeJ_G0001146.1 mouse_genomes_project 3 76751784 76758171 - TEC TEC MGP_C3HHeJ_T0061653.1 MGP_C3HHeJ_G0027169.1 mouse_genomes_project 3 89692841 89808318 + MGP_C3HHeJ_P0061653 Nup210l protein_coding protein_coding MGP_C3HHeJ_T0061654.1 MGP_C3HHeJ_G0027169.1 mouse_genomes_project 3 89692843 89808349 + MGP_C3HHeJ_P0061654 Nup210l protein_coding protein_coding MGP_C3HHeJ_T0007423.1 MGP_C3HHeJ_G0006079.1 mouse_genomes_project 3 35031821 35037531 + Gm12532 lincRNA lincRNA MGP_C3HHeJ_T0063444.1 MGP_C3HHeJ_G0027586.1 mouse_genomes_project 3 133077371 133117443 - MGP_C3HHeJ_P0063444 Hadh protein_coding protein_coding MGP_C3HHeJ_T0063445.1 MGP_C3HHeJ_G0027586.1 mouse_genomes_project 3 133089044 133117366 - Hadh protein_coding retained_intron MGP_C3HHeJ_T0098446.1 MGP_C3HHeJ_G0036651.1 mouse_genomes_project 3 105000943 105003373 - Gm43260 sense_intronic sense_intronic MGP_C3HHeJ_T0061829.1 MGP_C3HHeJ_G0027247.1 mouse_genomes_project 3 93366059 93369286 + MGP_C3HHeJ_P0061829 Tchhl1 protein_coding protein_coding MGP_C3HHeJ_T0007610.1 MGP_C3HHeJ_G0006218.1 mouse_genomes_project 3 129601870 129643548 + 9830132P13Rik lincRNA lincRNA MGP_C3HHeJ_T0060364.1 MGP_C3HHeJ_G0026908.1 mouse_genomes_project 3 49407295 49431788 + MGP_C3HHeJ_P0060364 Noct protein_coding protein_coding MGP_C3HHeJ_T0060365.1 MGP_C3HHeJ_G0026908.1 mouse_genomes_project 3 49407318 49431775 + MGP_C3HHeJ_P0060365 Noct protein_coding protein_coding MGP_C3HHeJ_T0001089.1 MGP_C3HHeJ_G0001023.1 mouse_genomes_project 3 22551503 22551697 + TEC TEC MGP_C3HHeJ_T0101971.1 MGP_C3HHeJ_G0039936.1 mouse_genomes_project 3 107192694 107220915 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0062394.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101579113 101613881 - MGP_C3HHeJ_P0062394 Ttf2 protein_coding protein_coding MGP_C3HHeJ_T0062395.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101582101 101586525 - Ttf2 protein_coding retained_intron MGP_C3HHeJ_T0062396.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101586517 101613881 - Ttf2 protein_coding retained_intron MGP_C3HHeJ_T0062397.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101587630 101593262 - MGP_C3HHeJ_P0062397 Ttf2 protein_coding protein_coding MGP_C3HHeJ_T0062398.1 MGP_C3HHeJ_G0027372.1 mouse_genomes_project 3 101599413 101600649 - Ttf2 protein_coding retained_intron MGP_C3HHeJ_T0007696.1 MGP_C3HHeJ_G0006288.1 mouse_genomes_project 3 155787369 155807338 - Gm43832 lincRNA lincRNA MGP_C3HHeJ_T0007697.1 MGP_C3HHeJ_G0006288.1 mouse_genomes_project 3 155790885 155799943 - Gm43832 lincRNA lincRNA MGP_C3HHeJ_T0061037.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84024082 84064844 + MGP_C3HHeJ_P0061037 Tmem154 protein_coding protein_coding MGP_C3HHeJ_T0061038.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84024100 84044382 + Tmem154 protein_coding retained_intron MGP_C3HHeJ_T0061039.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84024260 84044272 + Tmem154 protein_coding processed_transcript MGP_C3HHeJ_T0061040.1 MGP_C3HHeJ_G0027063.1 mouse_genomes_project 3 84048931 84051189 + Tmem154 protein_coding retained_intron MGP_C3HHeJ_T0060204.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34907444 34955666 + MGP_C3HHeJ_P0060204 Adad1 protein_coding protein_coding MGP_C3HHeJ_T0060205.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34907548 34954665 + MGP_C3HHeJ_P0060205 Adad1 protein_coding protein_coding MGP_C3HHeJ_T0060206.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34907595 34911273 + Adad1 protein_coding retained_intron MGP_C3HHeJ_T0060207.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34929012 34936472 + Adad1 protein_coding retained_intron MGP_C3HHeJ_T0060208.1 MGP_C3HHeJ_G0026880.1 mouse_genomes_project 3 34929149 34967417 + MGP_C3HHeJ_P0060208 Adad1 protein_coding protein_coding MGP_C3HHeJ_T0061933.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153255 95158473 - Zfp687 protein_coding retained_intron MGP_C3HHeJ_T0061934.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153367 95161905 - MGP_C3HHeJ_P0061934 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0061935.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153497 95161890 - Zfp687 protein_coding retained_intron MGP_C3HHeJ_T0061936.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153497 95162071 - Zfp687 protein_coding retained_intron MGP_C3HHeJ_T0061937.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95153502 95162104 - MGP_C3HHeJ_P0061937 Zfp687 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061938.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95158505 95162115 - MGP_C3HHeJ_P0061938 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0061939.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95158634 95161891 - MGP_C3HHeJ_P0061939 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0061940.1 MGP_C3HHeJ_G0027268.1 mouse_genomes_project 3 95158839 95161885 - MGP_C3HHeJ_P0061940 Zfp687 protein_coding protein_coding MGP_C3HHeJ_T0060895.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78660218 78777898 - MGP_C3HHeJ_P0060895 Fnip2 protein_coding protein_coding MGP_C3HHeJ_T0060896.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78661108 78670425 - Fnip2 protein_coding retained_intron MGP_C3HHeJ_T0060897.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78663515 78777784 - MGP_C3HHeJ_P0060897 Fnip2 protein_coding protein_coding MGP_C3HHeJ_T0060898.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78663814 78705768 - Fnip2 protein_coding retained_intron MGP_C3HHeJ_T0060899.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78709471 78723327 - Fnip2 protein_coding processed_transcript MGP_C3HHeJ_T0060900.1 MGP_C3HHeJ_G0027029.1 mouse_genomes_project 3 78712844 78777781 - Fnip2 protein_coding retained_intron MGP_C3HHeJ_T0004336.1 MGP_C3HHeJ_G0003777.1 mouse_genomes_project 3 159657577 159674102 - Gm15577 antisense antisense MGP_C3HHeJ_T0007648.1 MGP_C3HHeJ_G0006251.1 mouse_genomes_project 3 143022388 143023761 + 4930590L14Rik lincRNA lincRNA MGP_C3HHeJ_T0062095.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95977251 - Tars2 protein_coding retained_intron MGP_C3HHeJ_T0062096.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982204 - MGP_C3HHeJ_P0062096 Tars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062097.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982188 - MGP_C3HHeJ_P0062097 Tars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062098.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982215 - MGP_C3HHeJ_P0062098 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062099.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982224 - MGP_C3HHeJ_P0062099 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062100.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966273 95982224 - MGP_C3HHeJ_P0062100 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062101.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95966316 95968444 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062102.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95970150 95982236 - MGP_C3HHeJ_P0062102 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062103.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95972082 95974831 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062104.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95973813 95982224 - MGP_C3HHeJ_P0062104 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062105.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95973847 95982191 - MGP_C3HHeJ_P0062105 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062106.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95974850 95982224 - MGP_C3HHeJ_P0062106 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062107.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95974873 95981708 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062108.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95974875 95982202 - MGP_C3HHeJ_P0062108 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0062109.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95976511 95977251 - Tars2 protein_coding retained_intron MGP_C3HHeJ_T0062110.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95976637 95982170 - Tars2 protein_coding processed_transcript MGP_C3HHeJ_T0062111.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95976972 95981825 - Tars2 protein_coding retained_intron MGP_C3HHeJ_T0062112.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95977036 95982202 - MGP_C3HHeJ_P0062112 Tars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062113.1 MGP_C3HHeJ_G0027297.1 mouse_genomes_project 3 95982158 95987600 - MGP_C3HHeJ_P0062113 Tars2 protein_coding protein_coding MGP_C3HHeJ_T0007508.1 MGP_C3HHeJ_G0006142.1 mouse_genomes_project 3 82418583 82422553 - Gm10710 lincRNA lincRNA MGP_C3HHeJ_T0014131.1 MGP_C3HHeJ_G0012235.1 mouse_genomes_project 3 125104971 125105717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098426.1 MGP_C3HHeJ_G0036631.1 mouse_genomes_project 3 102274292 102275610 - Gm42941 sense_intronic sense_intronic MGP_C3HHeJ_T0061496.1 MGP_C3HHeJ_G0027146.1 mouse_genomes_project 3 88875513 88880818 - MGP_C3HHeJ_P0061496 Efna4 protein_coding protein_coding MGP_C3HHeJ_T0061479.1 MGP_C3HHeJ_G0027142.1 mouse_genomes_project 3 88798248 88806882 + MGP_C3HHeJ_P0061479 Dpm3 protein_coding protein_coding MGP_C3HHeJ_T0061480.1 MGP_C3HHeJ_G0027142.1 mouse_genomes_project 3 88806356 88806882 + MGP_C3HHeJ_P0061480 Dpm3 protein_coding protein_coding MGP_C3HHeJ_T0061481.1 MGP_C3HHeJ_G0027142.1 mouse_genomes_project 3 88806443 88806884 + Dpm3 protein_coding retained_intron MGP_C3HHeJ_T0014194.1 MGP_C3HHeJ_G0012298.1 mouse_genomes_project 3 144771138 144772200 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098467.1 MGP_C3HHeJ_G0036672.1 mouse_genomes_project 3 155922778 155924922 - 1700012D16Rik sense_intronic sense_intronic MGP_C3HHeJ_T0059916.1 MGP_C3HHeJ_G0026830.1 mouse_genomes_project 3 26302081 26304113 - MGP_C3HHeJ_P0059916 Yae1d1 protein_coding protein_coding MGP_C3HHeJ_T0061798.1 MGP_C3HHeJ_G0027223.1 mouse_genomes_project 3 92533236 92534939 - MGP_C3HHeJ_P0061798 Lce1a2 protein_coding protein_coding MGP_C3HHeJ_T0001098.1 MGP_C3HHeJ_G0001032.1 mouse_genomes_project 3 28066673 28067541 + TEC TEC MGP_C3HHeJ_T0001295.1 MGP_C3HHeJ_G0001227.1 mouse_genomes_project 3 128697381 128701120 - TEC TEC MGP_C3HHeJ_T0001076.1 MGP_C3HHeJ_G0001010.1 mouse_genomes_project 3 5968077 5971043 - TEC TEC MGP_C3HHeJ_T0004182.1 MGP_C3HHeJ_G0003675.1 mouse_genomes_project 3 63935239 64114240 - antisense antisense MGP_C3HHeJ_T0004183.1 MGP_C3HHeJ_G0003675.1 mouse_genomes_project 3 64105855 64114212 - antisense antisense MGP_C3HHeJ_T0007626.1 MGP_C3HHeJ_G0006232.1 mouse_genomes_project 3 135106457 135108948 - Gm43254 lincRNA lincRNA MGP_C3HHeJ_T0062512.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357797 104416258 + MGP_C3HHeJ_P0062512 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062513.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357847 104420505 + MGP_C3HHeJ_P0062513 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062514.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357848 104420505 + MGP_C3HHeJ_P0062514 Syt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062515.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357866 104418095 + MGP_C3HHeJ_P0062515 Syt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062516.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104357944 104416239 + MGP_C3HHeJ_P0062516 Syt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062517.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359800 104370962 + MGP_C3HHeJ_P0062517 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062518.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359845 104420504 + MGP_C3HHeJ_P0062518 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062519.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359861 104412897 + MGP_C3HHeJ_P0062519 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0062520.1 MGP_C3HHeJ_G0027395.1 mouse_genomes_project 3 104359861 104438827 + MGP_C3HHeJ_P0062520 Syt6 protein_coding protein_coding MGP_C3HHeJ_T0014053.1 MGP_C3HHeJ_G0012157.1 mouse_genomes_project 3 101596099 101596598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059641.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2361785 2573409 + MGP_C3HHeJ_P0059641 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0059642.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2361805 2490813 + Zfhx4 protein_coding retained_intron MGP_C3HHeJ_T0059643.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2361813 2576098 + MGP_C3HHeJ_P0059643 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0059644.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2368061 2391107 + MGP_C3HHeJ_P0059644 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0059645.1 MGP_C3HHeJ_G0026758.1 mouse_genomes_project 3 2390760 2576100 + MGP_C3HHeJ_P0059645 Zfhx4 protein_coding protein_coding MGP_C3HHeJ_T0062144.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131501 96136504 + MGP_C3HHeJ_P0062144 Aph1a protein_coding protein_coding MGP_C3HHeJ_T0062145.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131565 96132524 + MGP_C3HHeJ_P0062145 Aph1a protein_coding protein_coding MGP_C3HHeJ_T0062146.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131587 96135661 + MGP_C3HHeJ_P0062146 Aph1a protein_coding protein_coding MGP_C3HHeJ_T0062147.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131703 96136814 + MGP_C3HHeJ_P0062147 Aph1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0062148.1 MGP_C3HHeJ_G0027303.1 mouse_genomes_project 3 96131997 96136048 + Aph1a protein_coding retained_intron MGP_C3HHeJ_T0061717.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102306 90104708 - Snapin protein_coding retained_intron MGP_C3HHeJ_T0061718.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102314 90105313 - MGP_C3HHeJ_P0061718 Snapin protein_coding protein_coding MGP_C3HHeJ_T0061719.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102650 90105273 - MGP_C3HHeJ_P0061719 Snapin protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061720.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90102653 90105304 - MGP_C3HHeJ_P0061720 Snapin protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061721.1 MGP_C3HHeJ_G0027181.1 mouse_genomes_project 3 90103279 90105072 - Snapin protein_coding retained_intron MGP_C3HHeJ_T0060985.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82340889 82357478 + MGP_C3HHeJ_P0060985 Plrg1 protein_coding protein_coding MGP_C3HHeJ_T0060986.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82340899 82357412 + MGP_C3HHeJ_P0060986 Plrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060987.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82340922 82357295 + MGP_C3HHeJ_P0060987 Plrg1 protein_coding protein_coding MGP_C3HHeJ_T0060988.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82353169 82354191 + Plrg1 protein_coding retained_intron MGP_C3HHeJ_T0060989.1 MGP_C3HHeJ_G0027051.1 mouse_genomes_project 3 82354098 82355288 + Plrg1 protein_coding retained_intron MGP_C3HHeJ_T0001101.1 MGP_C3HHeJ_G0001035.1 mouse_genomes_project 3 28541877 28542187 - TEC TEC MGP_C3HHeJ_T0062186.1 MGP_C3HHeJ_G0027311.1 mouse_genomes_project 3 96435123 96450412 + MGP_C3HHeJ_P0062186 Sv2a protein_coding protein_coding MGP_C3HHeJ_T0062187.1 MGP_C3HHeJ_G0027311.1 mouse_genomes_project 3 96440636 96442398 + Sv2a protein_coding retained_intron MGP_C3HHeJ_T0062188.1 MGP_C3HHeJ_G0027311.1 mouse_genomes_project 3 96447437 96450409 + Sv2a protein_coding processed_transcript MGP_C3HHeJ_T0061306.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88161895 88169811 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061307.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88162100 88172572 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061308.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88162232 88202113 + MGP_C3HHeJ_P0061308 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061309.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88169654 88172734 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061310.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88169842 88188826 + MGP_C3HHeJ_P0061310 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061311.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88170600 88189730 + MGP_C3HHeJ_P0061311 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061312.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88171375 88202716 + MGP_C3HHeJ_P0061312 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061313.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88171375 88203238 + MGP_C3HHeJ_P0061313 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061314.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88171749 88202079 + MGP_C3HHeJ_P0061314 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061315.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176337 88202047 + MGP_C3HHeJ_P0061315 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061316.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176350 88194737 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061317.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176471 88202047 + MGP_C3HHeJ_P0061317 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061318.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176504 88203236 + MGP_C3HHeJ_P0061318 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061319.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176672 88189693 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061320.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88176760 88188291 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061321.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88177671 88188157 + MGP_C3HHeJ_P0061321 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061322.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88178132 88195909 + MGP_C3HHeJ_P0061322 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061323.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88178569 88188848 + MGP_C3HHeJ_P0061323 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061324.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184671 88188207 + MGP_C3HHeJ_P0061324 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061325.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184698 88187332 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061326.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184702 88188223 + MGP_C3HHeJ_P0061326 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061327.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88184800 88187565 + MGP_C3HHeJ_P0061327 Arhgef2 protein_coding protein_coding MGP_C3HHeJ_T0061328.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88187141 88189893 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0061329.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88187426 88188821 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061330.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88187963 88188869 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061331.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88188148 88193046 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061332.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88189553 88190307 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061333.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88197597 88199084 + Arhgef2 protein_coding retained_intron MGP_C3HHeJ_T0061334.1 MGP_C3HHeJ_G0027119.1 mouse_genomes_project 3 88199103 88202149 + Arhgef2 protein_coding processed_transcript MGP_C3HHeJ_T0013922.1 MGP_C3HHeJ_G0012026.1 mouse_genomes_project 3 59834622 59834914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099252.1 MGP_C3HHeJ_G0037446.1 mouse_genomes_project 3 53901085 53901192 + Gm25404 snRNA snRNA MGP_C3HHeJ_T0060575.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56829820 56882978 + MGP_C3HHeJ_P0060575 Tsc22d2 protein_coding protein_coding MGP_C3HHeJ_T0060576.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56829825 56877915 + MGP_C3HHeJ_P0060576 Tsc22d2 protein_coding protein_coding MGP_C3HHeJ_T0060577.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56830983 56834005 + Tsc22d2 protein_coding retained_intron MGP_C3HHeJ_T0060578.1 MGP_C3HHeJ_G0026950.1 mouse_genomes_project 3 56832589 56876505 + MGP_C3HHeJ_P0060578 Tsc22d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063171.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123827251 123838136 + MGP_C3HHeJ_P0063171 Dnttip2 protein_coding protein_coding MGP_C3HHeJ_T0063172.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123827281 123829074 + Dnttip2 protein_coding processed_transcript MGP_C3HHeJ_T0063173.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123828880 123838114 + Dnttip2 protein_coding processed_transcript MGP_C3HHeJ_T0063174.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123829636 123832477 + Dnttip2 protein_coding retained_intron MGP_C3HHeJ_T0063175.1 MGP_C3HHeJ_G0027539.1 mouse_genomes_project 3 123833440 123837963 + Dnttip2 protein_coding retained_intron MGP_C3HHeJ_T0101970.1 MGP_C3HHeJ_G0039935.1 mouse_genomes_project 3 107084482 107085826 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007619.1 MGP_C3HHeJ_G0006225.1 mouse_genomes_project 3 132657501 132662918 - lincRNA lincRNA MGP_C3HHeJ_T0062662.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106850830 106864573 + MGP_C3HHeJ_P0062662 Ovgp1 protein_coding protein_coding MGP_C3HHeJ_T0062663.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106851202 106863202 + MGP_C3HHeJ_P0062663 Ovgp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062664.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106854405 106857281 + Ovgp1 protein_coding retained_intron MGP_C3HHeJ_T0062665.1 MGP_C3HHeJ_G0027428.1 mouse_genomes_project 3 106857256 106861900 + Ovgp1 protein_coding processed_transcript MGP_C3HHeJ_T0001074.1 MGP_C3HHeJ_G0001009.1 mouse_genomes_project 3 2356147 2358528 + TEC TEC MGP_C3HHeJ_T0001075.1 MGP_C3HHeJ_G0001009.1 mouse_genomes_project 3 2358074 2358407 + TEC TEC MGP_C3HHeJ_T0060254.1 MGP_C3HHeJ_G0026891.1 mouse_genomes_project 3 36772284 36902854 + MGP_C3HHeJ_P0060254 Fat4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060255.1 MGP_C3HHeJ_G0026891.1 mouse_genomes_project 3 36776730 36843507 + Fat4 protein_coding retained_intron MGP_C3HHeJ_T0004160.1 MGP_C3HHeJ_G0003657.1 mouse_genomes_project 3 36900613 36901693 - Gm43539 antisense antisense MGP_C3HHeJ_T0064021.1 MGP_C3HHeJ_G0027694.1 mouse_genomes_project 3 155056696 155270769 - MGP_C3HHeJ_P0064021 Ak5 protein_coding protein_coding MGP_C3HHeJ_T0064022.1 MGP_C3HHeJ_G0027694.1 mouse_genomes_project 3 155057744 155121316 - MGP_C3HHeJ_P0064022 Ak5 protein_coding protein_coding MGP_C3HHeJ_T0064023.1 MGP_C3HHeJ_G0027694.1 mouse_genomes_project 3 155068117 155073891 - Ak5 protein_coding retained_intron MGP_C3HHeJ_T0098125.1 MGP_C3HHeJ_G0036337.1 mouse_genomes_project 3 96776460 96776577 + Gm28001 rRNA rRNA MGP_C3HHeJ_T0007401.1 MGP_C3HHeJ_G0006059.1 mouse_genomes_project 3 26345579 26348104 - Gm32950 lincRNA lincRNA MGP_C3HHeJ_T0014111.1 MGP_C3HHeJ_G0012215.1 mouse_genomes_project 3 118335966 118336696 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060181.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696069 34724303 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060182.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696071 34896958 + MGP_C3HHeJ_P0060182 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060183.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696086 34723006 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060184.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696086 34780858 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060185.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696096 34896945 + MGP_C3HHeJ_P0060185 4932438A13Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0060186.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34696121 34785739 + MGP_C3HHeJ_P0060186 4932438A13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060187.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34697434 34767697 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060188.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34703013 34896958 + MGP_C3HHeJ_P0060188 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060189.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34703026 34723013 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060190.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34724780 34730145 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060191.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34730054 34785741 + MGP_C3HHeJ_P0060191 4932438A13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060192.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34736917 34755547 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060193.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34783807 34785736 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060194.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34847866 34896940 + MGP_C3HHeJ_P0060194 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060195.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34852263 34896941 + MGP_C3HHeJ_P0060195 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060196.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34852394 34896939 + MGP_C3HHeJ_P0060196 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060197.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34855192 34870801 + MGP_C3HHeJ_P0060197 4932438A13Rik protein_coding protein_coding MGP_C3HHeJ_T0060198.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34859517 34864630 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060199.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34860954 34864860 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060200.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34865202 34878687 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060201.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34878669 34881778 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060202.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34879366 34881780 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0060203.1 MGP_C3HHeJ_G0026879.1 mouse_genomes_project 3 34884806 34887550 + 4932438A13Rik protein_coding retained_intron MGP_C3HHeJ_T0013908.1 MGP_C3HHeJ_G0012012.1 mouse_genomes_project 3 56359305 56360484 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064169.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160880534 161150809 - MGP_C3HHeJ_P0064169 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064170.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160880538 161376302 - MGP_C3HHeJ_P0064170 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064171.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160882120 161150702 - MGP_C3HHeJ_P0064171 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064172.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 160882120 161376302 - MGP_C3HHeJ_P0064172 Lrrc7 protein_coding protein_coding MGP_C3HHeJ_T0064173.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 161218707 161375426 - Lrrc7 protein_coding retained_intron MGP_C3HHeJ_T0064174.1 MGP_C3HHeJ_G0027717.1 mouse_genomes_project 3 161255141 161375417 - Lrrc7 protein_coding retained_intron MGP_C3HHeJ_T0061976.1 MGP_C3HHeJ_G0027275.1 mouse_genomes_project 3 95298361 95302964 + MGP_C3HHeJ_P0061976 protein_coding protein_coding MGP_C3HHeJ_T0001292.1 MGP_C3HHeJ_G0001224.1 mouse_genomes_project 3 128622634 128624271 - TEC TEC MGP_C3HHeJ_T0101955.1 MGP_C3HHeJ_G0039920.1 mouse_genomes_project 3 87033066 87033591 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004228.1 MGP_C3HHeJ_G0003706.1 mouse_genomes_project 3 96419385 96424336 - Gm17690 antisense antisense MGP_C3HHeJ_T0004229.1 MGP_C3HHeJ_G0003706.1 mouse_genomes_project 3 96423296 96424338 - Gm17690 antisense antisense MGP_C3HHeJ_T0007597.1 MGP_C3HHeJ_G0006209.1 mouse_genomes_project 3 123154398 123162945 - A730020M07Rik lincRNA lincRNA MGP_C3HHeJ_T0007598.1 MGP_C3HHeJ_G0006209.1 mouse_genomes_project 3 123156588 123162948 - A730020M07Rik lincRNA lincRNA MGP_C3HHeJ_T0007599.1 MGP_C3HHeJ_G0006209.1 mouse_genomes_project 3 123156590 123162830 - A730020M07Rik lincRNA lincRNA MGP_C3HHeJ_T0099321.1 MGP_C3HHeJ_G0037515.1 mouse_genomes_project 3 160152109 160152216 + Gm22458 snRNA snRNA MGP_C3HHeJ_T0061755.1 MGP_C3HHeJ_G0027191.1 mouse_genomes_project 3 90232870 90236110 + MGP_C3HHeJ_P0061755 S100a5 protein_coding protein_coding MGP_C3HHeJ_T0061756.1 MGP_C3HHeJ_G0027191.1 mouse_genomes_project 3 90234139 90236110 + MGP_C3HHeJ_P0061756 S100a5 protein_coding protein_coding MGP_C3HHeJ_T0098117.1 MGP_C3HHeJ_G0036329.1 mouse_genomes_project 3 1463581 1463700 + n-R5s194 rRNA rRNA MGP_C3HHeJ_T0101980.1 MGP_C3HHeJ_G0039945.1 mouse_genomes_project 3 144763834 144775735 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013950.1 MGP_C3HHeJ_G0012054.1 mouse_genomes_project 3 68536382 68536779 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063345.1 MGP_C3HHeJ_G0027567.1 mouse_genomes_project 3 129554321 129582200 - MGP_C3HHeJ_P0063345 5730508B09Rik protein_coding protein_coding MGP_C3HHeJ_T0063346.1 MGP_C3HHeJ_G0027567.1 mouse_genomes_project 3 129554943 129582164 - MGP_C3HHeJ_P0063346 5730508B09Rik protein_coding protein_coding MGP_C3HHeJ_T0060770.1 MGP_C3HHeJ_G0026998.1 mouse_genomes_project 3 66287180 66293109 - MGP_C3HHeJ_P0060770 Lxn protein_coding protein_coding MGP_C3HHeJ_T0060771.1 MGP_C3HHeJ_G0026998.1 mouse_genomes_project 3 66287183 66290817 - Lxn protein_coding retained_intron MGP_C3HHeJ_T0060772.1 MGP_C3HHeJ_G0026998.1 mouse_genomes_project 3 66290243 66292965 - Lxn protein_coding retained_intron MGP_C3HHeJ_T0001133.1 MGP_C3HHeJ_G0001067.1 mouse_genomes_project 3 40070445 40074220 + TEC TEC MGP_C3HHeJ_T0062415.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102547251 102611330 - MGP_C3HHeJ_P0062415 Slc22a15 protein_coding protein_coding MGP_C3HHeJ_T0062416.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102551372 102611386 - MGP_C3HHeJ_P0062416 Slc22a15 protein_coding protein_coding MGP_C3HHeJ_T0062417.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102551396 102582922 - Slc22a15 protein_coding processed_transcript MGP_C3HHeJ_T0062418.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102554940 102570333 - Slc22a15 protein_coding retained_intron MGP_C3HHeJ_T0062419.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102556178 102611316 - MGP_C3HHeJ_P0062419 Slc22a15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062420.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102564086 102569060 - Slc22a15 protein_coding retained_intron MGP_C3HHeJ_T0062421.1 MGP_C3HHeJ_G0027379.1 mouse_genomes_project 3 102607941 102611390 - Slc22a15 protein_coding processed_transcript MGP_C3HHeJ_T0010458.1 MGP_C3HHeJ_G0008591.1 mouse_genomes_project 3 110099636 110099750 + Gm44384 miRNA miRNA MGP_C3HHeJ_T0014186.1 MGP_C3HHeJ_G0012290.1 mouse_genomes_project 3 142224741 142226381 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062365.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100466793 100548273 + Spag17 protein_coding processed_transcript MGP_C3HHeJ_T0062366.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100466804 100737534 + MGP_C3HHeJ_P0062366 Spag17 protein_coding protein_coding MGP_C3HHeJ_T0062367.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100611547 100616587 + Spag17 protein_coding retained_intron MGP_C3HHeJ_T0062368.1 MGP_C3HHeJ_G0027365.1 mouse_genomes_project 3 100616530 100627865 + Spag17 protein_coding retained_intron MGP_C3HHeJ_T0013781.1 MGP_C3HHeJ_G0011885.1 mouse_genomes_project 3 11937157 11938168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013800.1 MGP_C3HHeJ_G0011904.1 mouse_genomes_project 3 17238721 17239281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099281.1 MGP_C3HHeJ_G0037475.1 mouse_genomes_project 3 90184245 90184392 - Gm23464 snRNA snRNA MGP_C3HHeJ_T0099260.1 MGP_C3HHeJ_G0037454.1 mouse_genomes_project 3 64339504 64339597 + Gm22279 snRNA snRNA MGP_C3HHeJ_T0098126.1 MGP_C3HHeJ_G0036338.1 mouse_genomes_project 3 129412825 129412911 + Gm23279 rRNA rRNA MGP_C3HHeJ_T0063146.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123486427 123507803 + MGP_C3HHeJ_P0063146 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063147.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123487115 123552058 + MGP_C3HHeJ_P0063147 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063148.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123487116 123523550 + MGP_C3HHeJ_P0063148 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063149.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123501702 123527421 + MGP_C3HHeJ_P0063149 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063150.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123501702 123545219 + MGP_C3HHeJ_P0063150 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063151.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123501809 123550280 + MGP_C3HHeJ_P0063151 Arhgap29 protein_coding protein_coding MGP_C3HHeJ_T0063152.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123516183 123527516 + Arhgap29 protein_coding retained_intron MGP_C3HHeJ_T0063153.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123523502 123527190 + Arhgap29 protein_coding retained_intron MGP_C3HHeJ_T0063154.1 MGP_C3HHeJ_G0027536.1 mouse_genomes_project 3 123537612 123541103 + Arhgap29 protein_coding retained_intron MGP_C3HHeJ_T0061909.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100172 95105569 + MGP_C3HHeJ_P0061909 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061910.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100205 95102602 + MGP_C3HHeJ_P0061910 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061911.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100205 95107634 + MGP_C3HHeJ_P0061911 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061912.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100206 95102386 + MGP_C3HHeJ_P0061912 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061913.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100232 95107422 + MGP_C3HHeJ_P0061913 Rfx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061914.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100257 95101776 + Rfx5 protein_coding processed_transcript MGP_C3HHeJ_T0061915.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100257 95103221 + MGP_C3HHeJ_P0061915 Rfx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061916.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100267 95107422 + MGP_C3HHeJ_P0061916 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061917.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100292 95102464 + MGP_C3HHeJ_P0061917 Rfx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061918.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100298 95107419 + Rfx5 protein_coding retained_intron MGP_C3HHeJ_T0061919.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100323 95107422 + MGP_C3HHeJ_P0061919 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061920.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100481 95102868 + MGP_C3HHeJ_P0061920 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061921.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100575 95102400 + MGP_C3HHeJ_P0061921 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061922.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100624 95102431 + MGP_C3HHeJ_P0061922 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061923.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95100835 95105679 + MGP_C3HHeJ_P0061923 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061924.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95101087 95107634 + MGP_C3HHeJ_P0061924 Rfx5 protein_coding protein_coding MGP_C3HHeJ_T0061925.1 MGP_C3HHeJ_G0027266.1 mouse_genomes_project 3 95101543 95102875 + Rfx5 protein_coding retained_intron MGP_C3HHeJ_T0001368.1 MGP_C3HHeJ_G0001299.1 mouse_genomes_project 3 161299303 161300328 + TEC TEC MGP_C3HHeJ_T0013886.1 MGP_C3HHeJ_G0011990.1 mouse_genomes_project 3 49594365 49594684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001344.1 MGP_C3HHeJ_G0001275.1 mouse_genomes_project 3 154846770 154849539 - TEC TEC MGP_C3HHeJ_T0061006.1 MGP_C3HHeJ_G0027056.1 mouse_genomes_project 3 83430633 83498185 - MGP_C3HHeJ_P0061006 Mnd1 protein_coding protein_coding MGP_C3HHeJ_T0001362.1 MGP_C3HHeJ_G0001293.1 mouse_genomes_project 3 160692261 160694492 - TEC TEC MGP_C3HHeJ_T0060412.1 MGP_C3HHeJ_G0026916.1 mouse_genomes_project 3 49897839 50016271 - MGP_C3HHeJ_P0060412 Maml3 protein_coding protein_coding MGP_C3HHeJ_T0060413.1 MGP_C3HHeJ_G0026916.1 mouse_genomes_project 3 49897839 50328122 - MGP_C3HHeJ_P0060413 Maml3 protein_coding protein_coding MGP_C3HHeJ_T0060414.1 MGP_C3HHeJ_G0026916.1 mouse_genomes_project 3 50014113 50016309 - Maml3 protein_coding retained_intron MGP_C3HHeJ_T0013755.1 MGP_C3HHeJ_G0011859.1 mouse_genomes_project 3 5830928 5832158 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001329.1 MGP_C3HHeJ_G0001260.1 mouse_genomes_project 3 137796801 137800646 + TEC TEC MGP_C3HHeJ_T0014202.1 MGP_C3HHeJ_G0012306.1 mouse_genomes_project 3 148925143 148925535 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001304.1 MGP_C3HHeJ_G0001236.1 mouse_genomes_project 3 129542445 129543117 - TEC TEC MGP_C3HHeJ_T0062442.1 MGP_C3HHeJ_G0027384.1 mouse_genomes_project 3 103457932 103492616 + MGP_C3HHeJ_P0062442 Tspan2 protein_coding protein_coding MGP_C3HHeJ_T0062443.1 MGP_C3HHeJ_G0027384.1 mouse_genomes_project 3 103458174 103492879 + MGP_C3HHeJ_P0062443 Tspan2 protein_coding protein_coding MGP_C3HHeJ_T0062444.1 MGP_C3HHeJ_G0027384.1 mouse_genomes_project 3 103482920 103527311 + MGP_C3HHeJ_P0062444 Tspan2 protein_coding protein_coding MGP_C3HHeJ_T0060925.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79095723 79159754 + MGP_C3HHeJ_P0060925 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060926.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79095787 79150215 + MGP_C3HHeJ_P0060926 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060927.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79096121 79097423 + MGP_C3HHeJ_P0060927 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060928.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79097109 79159752 + MGP_C3HHeJ_P0060928 Fam198b protein_coding protein_coding MGP_C3HHeJ_T0060929.1 MGP_C3HHeJ_G0027035.1 mouse_genomes_project 3 79097235 79100825 + Fam198b protein_coding retained_intron MGP_C3HHeJ_T0007483.1 MGP_C3HHeJ_G0006122.1 mouse_genomes_project 3 67617678 67618856 + Gm35584 lincRNA lincRNA MGP_C3HHeJ_T0100543.1 MGP_C3HHeJ_G0038737.1 mouse_genomes_project 3 66402434 66402566 - Gm25919 snoRNA snoRNA MGP_C3HHeJ_T0060846.1 MGP_C3HHeJ_G0027018.1 mouse_genomes_project 3 72085503 72097342 - MGP_C3HHeJ_P0060846 Slitrk3 protein_coding protein_coding MGP_C3HHeJ_T0060847.1 MGP_C3HHeJ_G0027018.1 mouse_genomes_project 3 72086363 72098241 - MGP_C3HHeJ_P0060847 Slitrk3 protein_coding protein_coding MGP_C3HHeJ_T0007504.1 MGP_C3HHeJ_G0006139.1 mouse_genomes_project 3 82014018 82019229 + Gm30043 lincRNA lincRNA MGP_C3HHeJ_T0063479.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134789413 134892532 - MGP_C3HHeJ_P0063479 Gstcd protein_coding protein_coding MGP_C3HHeJ_T0063480.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134791355 134892740 - MGP_C3HHeJ_P0063480 Gstcd protein_coding protein_coding MGP_C3HHeJ_T0063481.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134800291 134809844 - Gstcd protein_coding retained_intron MGP_C3HHeJ_T0063482.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134802997 134892454 - Gstcd protein_coding processed_transcript MGP_C3HHeJ_T0063483.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134881344 134892485 - Gstcd protein_coding retained_intron MGP_C3HHeJ_T0063484.1 MGP_C3HHeJ_G0027595.1 mouse_genomes_project 3 134881540 134883244 - Gstcd protein_coding retained_intron MGP_C3HHeJ_T0061090.1 MGP_C3HHeJ_G0027076.1 mouse_genomes_project 3 86698244 86711065 - MGP_C3HHeJ_P0061090 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061091.1 MGP_C3HHeJ_G0027076.1 mouse_genomes_project 3 86706295 86711094 - MGP_C3HHeJ_P0061091 protein_coding protein_coding MGP_C3HHeJ_T0013890.1 MGP_C3HHeJ_G0011994.1 mouse_genomes_project 3 50661766 50662007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061052.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055756 85069671 - Fam160a1 protein_coding retained_intron MGP_C3HHeJ_T0061053.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055758 85225199 - MGP_C3HHeJ_P0061053 Fam160a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061054.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055758 85142258 - MGP_C3HHeJ_P0061054 Fam160a1 protein_coding protein_coding MGP_C3HHeJ_T0061055.1 MGP_C3HHeJ_G0027066.1 mouse_genomes_project 3 85055760 85137473 - MGP_C3HHeJ_P0061055 Fam160a1 protein_coding protein_coding MGP_C3HHeJ_T0060597.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57436571 57545485 + MGP_C3HHeJ_P0060597 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060598.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437233 57762066 + MGP_C3HHeJ_P0060598 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060599.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437724 57761794 + MGP_C3HHeJ_P0060599 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060600.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437724 57761794 + MGP_C3HHeJ_P0060600 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060601.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57437724 57544385 + MGP_C3HHeJ_P0060601 Med12l protein_coding protein_coding MGP_C3HHeJ_T0060621.1 MGP_C3HHeJ_G0026957.1 mouse_genomes_project 3 57707932 57759285 + MGP_C3HHeJ_P0060621 Med12l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061699.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000085 90043453 - MGP_C3HHeJ_P0061699 Ints3 protein_coding protein_coding MGP_C3HHeJ_T0061700.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000093 90043679 - MGP_C3HHeJ_P0061700 Ints3 protein_coding protein_coding MGP_C3HHeJ_T0061701.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000773 90011912 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0061702.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90000773 90043763 - MGP_C3HHeJ_P0061702 Ints3 protein_coding protein_coding MGP_C3HHeJ_T0061703.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90003064 90009473 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0061704.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90009802 90011372 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0061705.1 MGP_C3HHeJ_G0027178.1 mouse_genomes_project 3 90016590 90043772 - Ints3 protein_coding retained_intron MGP_C3HHeJ_T0100590.1 MGP_C3HHeJ_G0038784.1 mouse_genomes_project 3 156484304 156484427 + Gm25757 snoRNA snoRNA MGP_C3HHeJ_T0013915.1 MGP_C3HHeJ_G0012019.1 mouse_genomes_project 3 58197854 58197996 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004307.1 MGP_C3HHeJ_G0003757.1 mouse_genomes_project 3 137332448 137334905 - 4930539J05Rik antisense antisense MGP_C3HHeJ_T0004308.1 MGP_C3HHeJ_G0003757.1 mouse_genomes_project 3 137332465 137333999 - 4930539J05Rik antisense antisense MGP_C3HHeJ_T0063793.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387446 147391240 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063794.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387447 147426633 + MGP_C3HHeJ_P0063794 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063795.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387447 147426653 + MGP_C3HHeJ_P0063795 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063796.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387458 147406233 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063797.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387458 147426623 + MGP_C3HHeJ_P0063797 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063798.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387466 147406144 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063799.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387478 147426627 + MGP_C3HHeJ_P0063799 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063800.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387479 147397863 + MGP_C3HHeJ_P0063800 Odf2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063801.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387832 147388488 + Odf2l protein_coding processed_transcript MGP_C3HHeJ_T0063802.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147387832 147395000 + MGP_C3HHeJ_P0063802 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063803.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147389504 147397855 + MGP_C3HHeJ_P0063803 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063804.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147396715 147413194 + MGP_C3HHeJ_P0063804 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063805.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147401472 147420221 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063806.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408397 147420221 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063807.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408606 147416681 + Odf2l protein_coding processed_transcript MGP_C3HHeJ_T0063808.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408615 147426631 + Odf2l protein_coding retained_intron MGP_C3HHeJ_T0063809.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147408637 147420173 + MGP_C3HHeJ_P0063809 Odf2l protein_coding protein_coding MGP_C3HHeJ_T0063810.1 MGP_C3HHeJ_G0027659.1 mouse_genomes_project 3 147420161 147425543 + MGP_C3HHeJ_P0063810 Odf2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099320.1 MGP_C3HHeJ_G0037514.1 mouse_genomes_project 3 160011867 160011974 - Gm23725 snRNA snRNA MGP_C3HHeJ_T0099253.1 MGP_C3HHeJ_G0037447.1 mouse_genomes_project 3 56318535 56318635 - Gm24531 snRNA snRNA MGP_C3HHeJ_T0100578.1 MGP_C3HHeJ_G0038772.1 mouse_genomes_project 3 125102520 125102650 - Snora24 snoRNA snoRNA MGP_C3HHeJ_T0063850.1 MGP_C3HHeJ_G0027670.1 mouse_genomes_project 3 148563335 148631194 + MGP_C3HHeJ_P0063850 Lpar3 protein_coding protein_coding MGP_C3HHeJ_T0099277.1 MGP_C3HHeJ_G0037471.1 mouse_genomes_project 3 88735912 88736019 - Gm23269 snRNA snRNA MGP_C3HHeJ_T0061734.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145638 90147013 + MGP_C3HHeJ_P0061734 S100a14 protein_coding protein_coding MGP_C3HHeJ_T0061735.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145649 90147620 + MGP_C3HHeJ_P0061735 S100a14 protein_coding protein_coding MGP_C3HHeJ_T0061736.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145652 90147620 + MGP_C3HHeJ_P0061736 S100a14 protein_coding protein_coding MGP_C3HHeJ_T0061737.1 MGP_C3HHeJ_G0027185.1 mouse_genomes_project 3 90145654 90147609 + S100a14 protein_coding retained_intron MGP_C3HHeJ_T0062720.1 MGP_C3HHeJ_G0027443.1 mouse_genomes_project 3 108127851 108140490 + MGP_C3HHeJ_P0062720 Kcna10 protein_coding protein_coding MGP_C3HHeJ_T0062721.1 MGP_C3HHeJ_G0027443.1 mouse_genomes_project 3 108127939 108132121 + Kcna10 protein_coding processed_transcript MGP_C3HHeJ_T0004165.1 MGP_C3HHeJ_G0003662.1 mouse_genomes_project 3 50498943 50499944 - Gm20402 antisense antisense MGP_C3HHeJ_T0099289.1 MGP_C3HHeJ_G0037483.1 mouse_genomes_project 3 96738802 96739004 + Rnu1b6 snRNA snRNA MGP_C3HHeJ_T0014018.1 MGP_C3HHeJ_G0012122.1 mouse_genomes_project 3 93008070 93008203 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062080.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95899791 95913077 - MGP_C3HHeJ_P0062080 Adamtsl4 protein_coding protein_coding MGP_C3HHeJ_T0062081.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95899794 95913018 - MGP_C3HHeJ_P0062081 Adamtsl4 protein_coding protein_coding MGP_C3HHeJ_T0062082.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95900340 95900742 - Adamtsl4 protein_coding processed_transcript MGP_C3HHeJ_T0062083.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95902615 95903687 - Adamtsl4 protein_coding processed_transcript MGP_C3HHeJ_T0062084.1 MGP_C3HHeJ_G0027295.1 mouse_genomes_project 3 95908694 95913025 - MGP_C3HHeJ_P0062084 Adamtsl4 protein_coding protein_coding MGP_C3HHeJ_T0098119.1 MGP_C3HHeJ_G0036331.1 mouse_genomes_project 3 22970246 22970381 + Gm24250 rRNA rRNA MGP_C3HHeJ_T0061237.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87873993 87899871 + MGP_C3HHeJ_P0061237 protein_coding protein_coding MGP_C3HHeJ_T0061238.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87874044 87890262 + protein_coding retained_intron MGP_C3HHeJ_T0061239.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87874098 87880815 + protein_coding retained_intron MGP_C3HHeJ_T0061240.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87878218 87885137 + protein_coding processed_transcript MGP_C3HHeJ_T0061241.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87879939 87888275 + MGP_C3HHeJ_P0061241 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061242.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87890034 87892170 + protein_coding retained_intron MGP_C3HHeJ_T0061243.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87895726 87897170 + protein_coding retained_intron MGP_C3HHeJ_T0061244.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87895879 87898803 + protein_coding processed_transcript MGP_C3HHeJ_T0061245.1 MGP_C3HHeJ_G0027107.1 mouse_genomes_project 3 87898068 87898624 + protein_coding retained_intron MGP_C3HHeJ_T0060752.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65808234 66184542 + MGP_C3HHeJ_P0060752 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060753.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812520 65823347 + MGP_C3HHeJ_P0060753 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060754.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812522 66186378 + MGP_C3HHeJ_P0060754 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060755.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812535 65917012 + Rsrc1 protein_coding retained_intron MGP_C3HHeJ_T0060756.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812535 66181705 + MGP_C3HHeJ_P0060756 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060757.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812553 66186373 + MGP_C3HHeJ_P0060757 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060758.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812554 66184541 + MGP_C3HHeJ_P0060758 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060759.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812817 66186379 + MGP_C3HHeJ_P0060759 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060760.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65812828 65821585 + MGP_C3HHeJ_P0060760 Rsrc1 protein_coding protein_coding MGP_C3HHeJ_T0060761.1 MGP_C3HHeJ_G0026995.1 mouse_genomes_project 3 65817845 65821766 + Rsrc1 protein_coding retained_intron MGP_C3HHeJ_T0013917.1 MGP_C3HHeJ_G0012021.1 mouse_genomes_project 3 58492914 58493429 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059768.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497210 16525161 + MGP_C3HHeJ_P0059768 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059769.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497212 16529182 + MGP_C3HHeJ_P0059769 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059770.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497230 16528833 + MGP_C3HHeJ_P0059770 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059771.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16497993 16530280 + MGP_C3HHeJ_P0059771 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059772.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16498148 16529019 + MGP_C3HHeJ_P0059772 Mtfr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059773.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16498157 16525170 + MGP_C3HHeJ_P0059773 Mtfr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059774.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16498197 16521026 + MGP_C3HHeJ_P0059774 Mtfr1 protein_coding protein_coding MGP_C3HHeJ_T0059775.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16509913 16530267 + MGP_C3HHeJ_P0059775 Mtfr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059776.1 MGP_C3HHeJ_G0026804.1 mouse_genomes_project 3 16521046 16525688 + Mtfr1 protein_coding retained_intron MGP_C3HHeJ_T0059657.1 MGP_C3HHeJ_G0026763.1 mouse_genomes_project 3 4701312 4751387 + MGP_C3HHeJ_P0059657 Zc2hc1a protein_coding protein_coding MGP_C3HHeJ_T0059658.1 MGP_C3HHeJ_G0026763.1 mouse_genomes_project 3 4701315 4749629 + MGP_C3HHeJ_P0059658 Zc2hc1a protein_coding protein_coding MGP_C3HHeJ_T0059659.1 MGP_C3HHeJ_G0026763.1 mouse_genomes_project 3 4735642 4749054 + Zc2hc1a protein_coding retained_intron MGP_C3HHeJ_T0014005.1 MGP_C3HHeJ_G0012109.1 mouse_genomes_project 3 88645090 88645343 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063123.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938055 122970538 + MGP_C3HHeJ_P0063123 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063124.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938103 122970530 + Cnn3 protein_coding retained_intron MGP_C3HHeJ_T0063125.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938340 122970143 + MGP_C3HHeJ_P0063125 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063126.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122938852 122962023 + Cnn3 protein_coding processed_transcript MGP_C3HHeJ_T0063127.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122961430 122969478 + MGP_C3HHeJ_P0063127 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063128.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122962639 122969689 + Cnn3 protein_coding retained_intron MGP_C3HHeJ_T0063129.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122969418 122970279 + MGP_C3HHeJ_P0063129 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0063130.1 MGP_C3HHeJ_G0027531.1 mouse_genomes_project 3 122969447 122970281 + MGP_C3HHeJ_P0063130 Cnn3 protein_coding protein_coding MGP_C3HHeJ_T0013974.1 MGP_C3HHeJ_G0012078.1 mouse_genomes_project 3 77059186 77059558 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004324.1 MGP_C3HHeJ_G0003768.1 mouse_genomes_project 3 149008548 149018571 + Gm16325 antisense antisense MGP_C3HHeJ_T0004325.1 MGP_C3HHeJ_G0003768.1 mouse_genomes_project 3 149015464 149016368 + Gm16325 antisense antisense MGP_C3HHeJ_T0101969.1 MGP_C3HHeJ_G0039934.1 mouse_genomes_project 3 99338050 99339988 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100545.1 MGP_C3HHeJ_G0038739.1 mouse_genomes_project 3 69129755 69129883 - Gm23477 snoRNA snoRNA MGP_C3HHeJ_T0063641.1 MGP_C3HHeJ_G0027625.1 mouse_genomes_project 3 140166540 140184980 - MGP_C3HHeJ_P0063641 4930579F01Rik protein_coding protein_coding MGP_C3HHeJ_T0063642.1 MGP_C3HHeJ_G0027625.1 mouse_genomes_project 3 140166597 140185020 - MGP_C3HHeJ_P0063642 4930579F01Rik protein_coding protein_coding MGP_C3HHeJ_T0063643.1 MGP_C3HHeJ_G0027625.1 mouse_genomes_project 3 140180221 140192067 - 4930579F01Rik protein_coding processed_transcript MGP_C3HHeJ_T0061110.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100292 87187270 + Arhgef11 protein_coding retained_intron MGP_C3HHeJ_T0061111.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100308 87227797 + MGP_C3HHeJ_P0061111 Arhgef11 protein_coding protein_coding MGP_C3HHeJ_T0061112.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100318 87225673 + MGP_C3HHeJ_P0061112 Arhgef11 protein_coding protein_coding MGP_C3HHeJ_T0061113.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100325 87207203 + Arhgef11 protein_coding retained_intron MGP_C3HHeJ_T0061114.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87100834 87227798 + MGP_C3HHeJ_P0061114 Arhgef11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061115.1 MGP_C3HHeJ_G0027081.1 mouse_genomes_project 3 87101509 87226866 + MGP_C3HHeJ_P0061115 Arhgef11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0001120.1 MGP_C3HHeJ_G0001054.1 mouse_genomes_project 3 35490519 35492593 - TEC TEC MGP_C3HHeJ_T0062346.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99275743 99282624 - MGP_C3HHeJ_P0062346 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062347.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99275743 99282624 - MGP_C3HHeJ_P0062347 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062348.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99275743 99282622 - MGP_C3HHeJ_P0062348 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062349.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99276655 99292221 - MGP_C3HHeJ_P0062349 Hsd3b3 protein_coding protein_coding MGP_C3HHeJ_T0062350.1 MGP_C3HHeJ_G0027359.1 mouse_genomes_project 3 99287524 99292207 - Hsd3b3 protein_coding processed_transcript MGP_C3HHeJ_T0004252.1 MGP_C3HHeJ_G0003722.1 mouse_genomes_project 3 105234657 105243001 + Gm43257 antisense antisense MGP_C3HHeJ_T0004133.1 MGP_C3HHeJ_G0003639.1 mouse_genomes_project 3 26242432 26323183 - antisense antisense MGP_C3HHeJ_T0004134.1 MGP_C3HHeJ_G0003639.1 mouse_genomes_project 3 26278265 26281701 - antisense antisense MGP_C3HHeJ_T0007627.1 MGP_C3HHeJ_G0006233.1 mouse_genomes_project 3 135449432 135474194 - Gm42563 lincRNA lincRNA MGP_C3HHeJ_T0099250.1 MGP_C3HHeJ_G0037444.1 mouse_genomes_project 3 52142143 52142246 + Gm24851 snRNA snRNA MGP_C3HHeJ_T0007614.1 MGP_C3HHeJ_G0006222.1 mouse_genomes_project 3 130788364 130791104 - Gm28543 lincRNA lincRNA MGP_C3HHeJ_T0061432.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88737574 88743328 + MGP_C3HHeJ_P0061432 Gba protein_coding protein_coding MGP_C3HHeJ_T0061433.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88737582 88743330 + MGP_C3HHeJ_P0061433 Gba protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061434.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88737586 88743330 + MGP_C3HHeJ_P0061434 Gba protein_coding protein_coding MGP_C3HHeJ_T0061435.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88740133 88741037 + Gba protein_coding retained_intron MGP_C3HHeJ_T0061436.1 MGP_C3HHeJ_G0027136.1 mouse_genomes_project 3 88742865 88743615 + Gba protein_coding retained_intron MGP_C3HHeJ_T0001127.1 MGP_C3HHeJ_G0001061.1 mouse_genomes_project 3 37529185 37532165 + TEC TEC MGP_C3HHeJ_T0007453.1 MGP_C3HHeJ_G0006099.1 mouse_genomes_project 3 49568602 49576683 + Gm5103 lincRNA lincRNA MGP_C3HHeJ_T0007454.1 MGP_C3HHeJ_G0006099.1 mouse_genomes_project 3 49568654 49576690 + Gm5103 lincRNA lincRNA MGP_C3HHeJ_T0004330.1 MGP_C3HHeJ_G0003772.1 mouse_genomes_project 3 155540768 155541929 + Gm16213 antisense antisense MGP_C3HHeJ_T0001153.1 MGP_C3HHeJ_G0001087.1 mouse_genomes_project 3 49623791 49623902 + TEC TEC MGP_C3HHeJ_T0062983.1 MGP_C3HHeJ_G0027504.1 mouse_genomes_project 3 116968662 116973326 - MGP_C3HHeJ_P0062983 S1pr1 protein_coding protein_coding MGP_C3HHeJ_T0013796.1 MGP_C3HHeJ_G0011900.1 mouse_genomes_project 3 16888943 16889159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013813.1 MGP_C3HHeJ_G0011917.1 mouse_genomes_project 3 23837977 23839944 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061530.1 MGP_C3HHeJ_G0027153.1 mouse_genomes_project 3 88963921 88966860 - MGP_C3HHeJ_P0061530 Cks1b protein_coding protein_coding MGP_C3HHeJ_T0061531.1 MGP_C3HHeJ_G0027153.1 mouse_genomes_project 3 88964006 88966494 - MGP_C3HHeJ_P0061531 Cks1b protein_coding protein_coding MGP_C3HHeJ_T0061532.1 MGP_C3HHeJ_G0027153.1 mouse_genomes_project 3 88964293 88966696 - MGP_C3HHeJ_P0061532 Cks1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014222.1 MGP_C3HHeJ_G0012326.1 mouse_genomes_project 3 162285153 162285375 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001245.1 MGP_C3HHeJ_G0001177.1 mouse_genomes_project 3 107399529 107402113 + TEC TEC MGP_C3HHeJ_T0007355.1 MGP_C3HHeJ_G0006029.1 mouse_genomes_project 3 1933450 1934714 + 1110015O18Rik lincRNA lincRNA MGP_C3HHeJ_T0007356.1 MGP_C3HHeJ_G0006029.1 mouse_genomes_project 3 1934600 1950958 + 1110015O18Rik lincRNA lincRNA MGP_C3HHeJ_T0007357.1 MGP_C3HHeJ_G0006029.1 mouse_genomes_project 3 1935539 1950022 + 1110015O18Rik lincRNA lincRNA MGP_C3HHeJ_T0060491.1 MGP_C3HHeJ_G0026933.1 mouse_genomes_project 3 53137152 53141829 - MGP_C3HHeJ_P0060491 Rfxap protein_coding protein_coding MGP_C3HHeJ_T0060492.1 MGP_C3HHeJ_G0026933.1 mouse_genomes_project 3 53138257 53139805 - Rfxap protein_coding processed_transcript MGP_C3HHeJ_T0060493.1 MGP_C3HHeJ_G0026933.1 mouse_genomes_project 3 53139812 53141458 - Rfxap protein_coding processed_transcript MGP_C3HHeJ_T0060045.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30384858 30397174 + MGP_C3HHeJ_P0060045 Actl6a protein_coding protein_coding MGP_C3HHeJ_T0060046.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387067 30405534 + MGP_C3HHeJ_P0060046 Actl6a protein_coding protein_coding MGP_C3HHeJ_T0060047.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387110 30388567 + Actl6a protein_coding retained_intron MGP_C3HHeJ_T0060048.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387325 30397168 + MGP_C3HHeJ_P0060048 Actl6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060049.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30387724 30397217 + MGP_C3HHeJ_P0060049 Actl6a protein_coding protein_coding MGP_C3HHeJ_T0060050.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30389943 30390731 + Actl6a protein_coding retained_intron MGP_C3HHeJ_T0060051.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30390732 30405334 + MGP_C3HHeJ_P0060051 Actl6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060052.1 MGP_C3HHeJ_G0026856.1 mouse_genomes_project 3 30397127 30405529 + Actl6a protein_coding retained_intron MGP_C3HHeJ_T0004321.1 MGP_C3HHeJ_G0003765.1 mouse_genomes_project 3 143737445 143757433 - Gm15689 antisense antisense MGP_C3HHeJ_T0014201.1 MGP_C3HHeJ_G0012305.1 mouse_genomes_project 3 148063137 148063577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059839.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19428928 19577680 + MGP_C3HHeJ_P0059839 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059840.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429003 19573837 + MGP_C3HHeJ_P0059840 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059841.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429032 19546986 + Tbl1xr1 protein_coding processed_transcript MGP_C3HHeJ_T0059842.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429108 19550118 + MGP_C3HHeJ_P0059842 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059843.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429157 19548944 + Tbl1xr1 protein_coding processed_transcript MGP_C3HHeJ_T0059844.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429212 19546954 + MGP_C3HHeJ_P0059844 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059845.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19429560 19576379 + MGP_C3HHeJ_P0059845 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059846.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19466883 19573054 + MGP_C3HHeJ_P0059846 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059847.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19491624 19548937 + MGP_C3HHeJ_P0059847 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0059848.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19501292 19574161 + MGP_C3HHeJ_P0059848 Tbl1xr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059849.1 MGP_C3HHeJ_G0026817.1 mouse_genomes_project 3 19564277 19571665 + MGP_C3HHeJ_P0059849 Tbl1xr1 protein_coding protein_coding MGP_C3HHeJ_T0062224.1 MGP_C3HHeJ_G0027330.1 mouse_genomes_project 3 96934130 96951752 + MGP_C3HHeJ_P0062224 Gm42957 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004219.1 MGP_C3HHeJ_G0003702.1 mouse_genomes_project 3 95144740 95151123 - Gm15265 antisense antisense MGP_C3HHeJ_T0004220.1 MGP_C3HHeJ_G0003702.1 mouse_genomes_project 3 95144774 95151546 - Gm15265 antisense antisense MGP_C3HHeJ_T0061782.1 MGP_C3HHeJ_G0027209.1 mouse_genomes_project 3 92270031 92271346 + MGP_C3HHeJ_P0061782 Sprr2j-ps protein_coding protein_coding MGP_C3HHeJ_T0062715.1 MGP_C3HHeJ_G0027440.1 mouse_genomes_project 3 107756880 107757907 - MGP_C3HHeJ_P0062715 Olfr266 protein_coding protein_coding MGP_C3HHeJ_T0062009.1 MGP_C3HHeJ_G0027281.1 mouse_genomes_project 3 95411303 95415944 - MGP_C3HHeJ_P0062009 Gm128 protein_coding protein_coding MGP_C3HHeJ_T0062010.1 MGP_C3HHeJ_G0027281.1 mouse_genomes_project 3 95411490 95415944 - MGP_C3HHeJ_P0062010 Gm128 protein_coding protein_coding MGP_C3HHeJ_T0060858.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74394154 74592007 - MGP_C3HHeJ_P0060858 Wdr49 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060859.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74394154 74592057 - MGP_C3HHeJ_P0060859 Wdr49 protein_coding protein_coding MGP_C3HHeJ_T0060860.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74510353 74566921 - MGP_C3HHeJ_P0060860 Wdr49 protein_coding protein_coding MGP_C3HHeJ_T0060861.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74510353 74592058 - MGP_C3HHeJ_P0060861 Wdr49 protein_coding protein_coding MGP_C3HHeJ_T0060862.1 MGP_C3HHeJ_G0027022.1 mouse_genomes_project 3 74589718 74592473 - Wdr49 protein_coding retained_intron MGP_C3HHeJ_T0010449.1 MGP_C3HHeJ_G0008582.1 mouse_genomes_project 3 93325581 93325690 - Gm22752 miRNA miRNA MGP_C3HHeJ_T0061819.1 MGP_C3HHeJ_G0027242.1 mouse_genomes_project 3 93051726 93056416 + MGP_C3HHeJ_P0061819 Crnn protein_coding protein_coding MGP_C3HHeJ_T0061820.1 MGP_C3HHeJ_G0027242.1 mouse_genomes_project 3 93051728 93056776 + MGP_C3HHeJ_P0061820 Crnn protein_coding protein_coding MGP_C3HHeJ_T0061821.1 MGP_C3HHeJ_G0027242.1 mouse_genomes_project 3 93055154 93056775 + MGP_C3HHeJ_P0061821 Crnn protein_coding protein_coding MGP_C3HHeJ_T0063197.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124520530 124574632 - MGP_C3HHeJ_P0063197 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063198.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124536234 124538665 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063199.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124540334 124574445 - MGP_C3HHeJ_P0063199 Usp53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063200.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124541508 124574628 - MGP_C3HHeJ_P0063200 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063201.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124544447 124574626 - MGP_C3HHeJ_P0063201 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063202.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124545940 124574632 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063203.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124547799 124551336 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063204.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124547842 124574593 - MGP_C3HHeJ_P0063204 Usp53 protein_coding protein_coding MGP_C3HHeJ_T0063205.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124549647 124553056 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0063206.1 MGP_C3HHeJ_G0027546.1 mouse_genomes_project 3 124557967 124574015 - Usp53 protein_coding retained_intron MGP_C3HHeJ_T0013899.1 MGP_C3HHeJ_G0012003.1 mouse_genomes_project 3 55497190 55499294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001309.1 MGP_C3HHeJ_G0001240.1 mouse_genomes_project 3 131132330 131135778 + TEC TEC MGP_C3HHeJ_T0062593.1 MGP_C3HHeJ_G0027412.1 mouse_genomes_project 3 105638614 105644058 + MGP_C3HHeJ_P0062593 Rhoc protein_coding protein_coding MGP_C3HHeJ_T0062594.1 MGP_C3HHeJ_G0027412.1 mouse_genomes_project 3 105638825 105642573 + MGP_C3HHeJ_P0062594 Rhoc protein_coding protein_coding MGP_C3HHeJ_T0062595.1 MGP_C3HHeJ_G0027412.1 mouse_genomes_project 3 105641578 105642476 + Rhoc protein_coding retained_intron MGP_C3HHeJ_T0060490.1 MGP_C3HHeJ_G0026932.1 mouse_genomes_project 3 53084947 53135295 + MGP_C3HHeJ_P0060490 Smad9 protein_coding protein_coding MGP_C3HHeJ_T0060345.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346645 43351293 + MGP_C3HHeJ_P0060345 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060346.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346653 43371477 + MGP_C3HHeJ_P0060346 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060347.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346672 43405151 + MGP_C3HHeJ_P0060347 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060348.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43346674 43393225 + MGP_C3HHeJ_P0060348 Pcdh10 protein_coding protein_coding MGP_C3HHeJ_T0060349.1 MGP_C3HHeJ_G0026904.1 mouse_genomes_project 3 43350890 43402012 + Pcdh10 protein_coding processed_transcript MGP_C3HHeJ_T0061817.1 MGP_C3HHeJ_G0027241.1 mouse_genomes_project 3 92891927 92893154 - MGP_C3HHeJ_P0061817 Lce1m protein_coding protein_coding MGP_C3HHeJ_T0061818.1 MGP_C3HHeJ_G0027241.1 mouse_genomes_project 3 92892600 92893153 - MGP_C3HHeJ_P0061818 Lce1m protein_coding protein_coding MGP_C3HHeJ_T0004319.1 MGP_C3HHeJ_G0003763.1 mouse_genomes_project 3 140274603 140302584 - Gm16559 antisense antisense MGP_C3HHeJ_T0013946.1 MGP_C3HHeJ_G0012050.1 mouse_genomes_project 3 67699493 67700703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013923.1 MGP_C3HHeJ_G0012027.1 mouse_genomes_project 3 60622012 60624259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098412.1 MGP_C3HHeJ_G0036617.1 mouse_genomes_project 3 94625842 94626720 - Gm43774 sense_intronic sense_intronic MGP_C3HHeJ_T0004301.1 MGP_C3HHeJ_G0003752.1 mouse_genomes_project 3 131525362 131537825 + 6330410L21Rik antisense antisense MGP_C3HHeJ_T0013898.1 MGP_C3HHeJ_G0012002.1 mouse_genomes_project 3 55198599 55199070 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060944.1 MGP_C3HHeJ_G0027038.1 mouse_genomes_project 3 80290699 80471738 + MGP_C3HHeJ_P0060944 Pdgfc protein_coding protein_coding MGP_C3HHeJ_T0060945.1 MGP_C3HHeJ_G0027038.1 mouse_genomes_project 3 80291455 80471732 + MGP_C3HHeJ_P0060945 Pdgfc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060946.1 MGP_C3HHeJ_G0027038.1 mouse_genomes_project 3 80291707 80468468 + MGP_C3HHeJ_P0060946 Pdgfc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063191.1 MGP_C3HHeJ_G0027542.1 mouse_genomes_project 3 124301154 124442784 + MGP_C3HHeJ_P0063191 Pde5a protein_coding protein_coding MGP_C3HHeJ_T0063192.1 MGP_C3HHeJ_G0027542.1 mouse_genomes_project 3 124301777 124442782 + MGP_C3HHeJ_P0063192 Pde5a protein_coding protein_coding MGP_C3HHeJ_T0063193.1 MGP_C3HHeJ_G0027542.1 mouse_genomes_project 3 124302429 124350293 + Pde5a protein_coding retained_intron MGP_C3HHeJ_T0004176.1 MGP_C3HHeJ_G0003670.1 mouse_genomes_project 3 57787346 57794024 + Gm38186 antisense antisense MGP_C3HHeJ_T0062194.1 MGP_C3HHeJ_G0027315.1 mouse_genomes_project 3 96471345 96473966 + MGP_C3HHeJ_P0062194 Hist2h2be protein_coding protein_coding MGP_C3HHeJ_T0100591.1 MGP_C3HHeJ_G0038785.1 mouse_genomes_project 3 156518736 156518861 + Gm24395 snoRNA snoRNA MGP_C3HHeJ_T0001324.1 MGP_C3HHeJ_G0001255.1 mouse_genomes_project 3 135435393 135445099 - TEC TEC MGP_C3HHeJ_T0062996.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117265487 117266499 + Extl2 protein_coding processed_transcript MGP_C3HHeJ_T0062997.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117265525 117282111 + Extl2 protein_coding processed_transcript MGP_C3HHeJ_T0062998.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117265830 117268870 + Extl2 protein_coding processed_transcript MGP_C3HHeJ_T0062999.1 MGP_C3HHeJ_G0027507.1 mouse_genomes_project 3 117268693 117285415 + MGP_C3HHeJ_P0062999 Extl2 protein_coding protein_coding MGP_C3HHeJ_T0064081.1 MGP_C3HHeJ_G0027704.1 mouse_genomes_project 3 157266077 157282864 - Tyw3 protein_coding processed_transcript MGP_C3HHeJ_T0064082.1 MGP_C3HHeJ_G0027704.1 mouse_genomes_project 3 157266310 157285355 - MGP_C3HHeJ_P0064082 Tyw3 protein_coding protein_coding MGP_C3HHeJ_T0064083.1 MGP_C3HHeJ_G0027704.1 mouse_genomes_project 3 157275834 157285433 - MGP_C3HHeJ_P0064083 Tyw3 protein_coding protein_coding MGP_C3HHeJ_T0099239.1 MGP_C3HHeJ_G0037433.1 mouse_genomes_project 3 16874765 16874929 + Gm23330 snRNA snRNA MGP_C3HHeJ_T0101420.1 MGP_C3HHeJ_G0039451.1 mouse_genomes_project 3 147119653 147146903 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101421.1 MGP_C3HHeJ_G0039451.1 mouse_genomes_project 3 147137411 147154215 - transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0062430.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102854464 102911418 - MGP_C3HHeJ_P0062430 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062431.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102860403 102870277 - MGP_C3HHeJ_P0062431 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062432.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102860403 102910688 - MGP_C3HHeJ_P0062432 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062433.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102860456 102902699 - MGP_C3HHeJ_P0062433 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062434.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102866544 102870320 - Vangl1 protein_coding retained_intron MGP_C3HHeJ_T0062435.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102866721 102869288 - Vangl1 protein_coding processed_transcript MGP_C3HHeJ_T0062436.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102889362 102903750 - MGP_C3HHeJ_P0062436 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0062437.1 MGP_C3HHeJ_G0027382.1 mouse_genomes_project 3 102902667 102910606 - MGP_C3HHeJ_P0062437 Vangl1 protein_coding protein_coding MGP_C3HHeJ_T0007411.1 MGP_C3HHeJ_G0006068.1 mouse_genomes_project 3 32167363 32175088 - Gm20515 lincRNA lincRNA MGP_C3HHeJ_T0059686.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 6990627 7145986 - MGP_C3HHeJ_P0059686 Pag1 protein_coding protein_coding MGP_C3HHeJ_T0059687.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 6995012 7145937 - MGP_C3HHeJ_P0059687 Pag1 protein_coding protein_coding MGP_C3HHeJ_T0059688.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 6995881 7008119 - Pag1 protein_coding retained_intron MGP_C3HHeJ_T0059689.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 7052200 7145670 - Pag1 protein_coding retained_intron MGP_C3HHeJ_T0059690.1 MGP_C3HHeJ_G0026771.1 mouse_genomes_project 3 7139751 7145937 - Pag1 protein_coding processed_transcript MGP_C3HHeJ_T0013889.1 MGP_C3HHeJ_G0011993.1 mouse_genomes_project 3 50466606 50467357 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100588.1 MGP_C3HHeJ_G0038782.1 mouse_genomes_project 3 150768190 150768322 - Gm23131 snoRNA snoRNA MGP_C3HHeJ_T0100582.1 MGP_C3HHeJ_G0038776.1 mouse_genomes_project 3 132694081 132694209 - Gm26090 snoRNA snoRNA MGP_C3HHeJ_T0001269.1 MGP_C3HHeJ_G0001201.1 mouse_genomes_project 3 123241360 123243168 - TEC TEC MGP_C3HHeJ_T0007591.1 MGP_C3HHeJ_G0006206.1 mouse_genomes_project 3 119353188 119357557 + 4921521D15Rik lincRNA lincRNA MGP_C3HHeJ_T0100550.1 MGP_C3HHeJ_G0038744.1 mouse_genomes_project 3 85367980 85368099 + Gm25876 snoRNA snoRNA MGP_C3HHeJ_T0014094.1 MGP_C3HHeJ_G0012198.1 mouse_genomes_project 3 113328915 113329215 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014082.1 MGP_C3HHeJ_G0012186.1 mouse_genomes_project 3 108998389 109000423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013957.1 MGP_C3HHeJ_G0012061.1 mouse_genomes_project 3 70352221 70352677 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004237.1 MGP_C3HHeJ_G0003713.1 mouse_genomes_project 3 98085333 98091127 + Gm43076 antisense antisense MGP_C3HHeJ_T0004238.1 MGP_C3HHeJ_G0003713.1 mouse_genomes_project 3 98085523 98088052 + Gm43076 antisense antisense MGP_C3HHeJ_T0061772.1 MGP_C3HHeJ_G0027200.1 mouse_genomes_project 3 91914527 91917399 - MGP_C3HHeJ_P0061772 Lor protein_coding protein_coding MGP_C3HHeJ_T0061828.1 MGP_C3HHeJ_G0027246.1 mouse_genomes_project 3 93334199 93342548 + MGP_C3HHeJ_P0061828 Tchh protein_coding protein_coding MGP_C3HHeJ_T0004279.1 MGP_C3HHeJ_G0003735.1 mouse_genomes_project 3 117625366 117628152 + Gm29151 antisense antisense MGP_C3HHeJ_T0007517.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87738125 87742600 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007518.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87738138 87757174 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007519.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87738618 87757731 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007520.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87740776 87756024 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007521.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87746158 87753596 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007522.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87746168 87757782 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007523.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87754399 87756038 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007524.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87756015 87761720 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007525.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87757668 87759777 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007526.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87760330 87761531 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0007527.1 MGP_C3HHeJ_G0006151.1 mouse_genomes_project 3 87760545 87761720 + Gm3764 lincRNA lincRNA MGP_C3HHeJ_T0062964.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114811813 114836731 - MGP_C3HHeJ_P0062964 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062965.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114812212 114836615 - MGP_C3HHeJ_P0062965 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062966.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114812219 114836731 - MGP_C3HHeJ_P0062966 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062967.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114813091 114836731 - MGP_C3HHeJ_P0062967 Rnpc3 protein_coding protein_coding MGP_C3HHeJ_T0062968.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114817888 114822022 - Rnpc3 protein_coding processed_transcript MGP_C3HHeJ_T0062969.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114823134 114828547 - Rnpc3 protein_coding processed_transcript MGP_C3HHeJ_T0062970.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114823383 114827898 - Rnpc3 protein_coding processed_transcript MGP_C3HHeJ_T0062971.1 MGP_C3HHeJ_G0027501.1 mouse_genomes_project 3 114833659 114836661 - Rnpc3 protein_coding retained_intron MGP_C3HHeJ_T0063663.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140465024 140496828 - MGP_C3HHeJ_P0063663 Metap1 protein_coding protein_coding MGP_C3HHeJ_T0063664.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140465749 140475141 - MGP_C3HHeJ_P0063664 Metap1 protein_coding protein_coding MGP_C3HHeJ_T0063665.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140472306 140481303 - Metap1 protein_coding retained_intron MGP_C3HHeJ_T0063666.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140472367 140481392 - Metap1 protein_coding retained_intron MGP_C3HHeJ_T0063667.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140475139 140487784 - Metap1 protein_coding processed_transcript MGP_C3HHeJ_T0063668.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140481647 140496712 - MGP_C3HHeJ_P0063668 Metap1 protein_coding protein_coding MGP_C3HHeJ_T0063669.1 MGP_C3HHeJ_G0027631.1 mouse_genomes_project 3 140486257 140496682 - Metap1 protein_coding retained_intron MGP_C3HHeJ_T0099311.1 MGP_C3HHeJ_G0037505.1 mouse_genomes_project 3 139687042 139687147 + Gm25080 snRNA snRNA MGP_C3HHeJ_T0007437.1 MGP_C3HHeJ_G0006089.1 mouse_genomes_project 3 39057311 39066936 - Gm42784 lincRNA lincRNA MGP_C3HHeJ_T0001213.1 MGP_C3HHeJ_G0001145.1 mouse_genomes_project 3 75720430 75723991 + TEC TEC MGP_C3HHeJ_T0017792.1 MGP_C3HHeJ_G0015288.1 mouse_genomes_project 3 137757634 137764656 - 4933401H06Rik processed_transcript macro_lncRNA MGP_C3HHeJ_T0017793.1 MGP_C3HHeJ_G0015288.1 mouse_genomes_project 3 137757737 137764656 - 4933401H06Rik processed_transcript antisense MGP_C3HHeJ_T0007548.1 MGP_C3HHeJ_G0006169.1 mouse_genomes_project 3 96746714 96759329 + lincRNA lincRNA MGP_C3HHeJ_T0004329.1 MGP_C3HHeJ_G0003771.1 mouse_genomes_project 3 155269325 155285614 + AI115009 antisense antisense MGP_C3HHeJ_T0063862.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148815827 148828662 - MGP_C3HHeJ_P0063862 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063863.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148815833 148852040 - MGP_C3HHeJ_P0063863 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063864.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148815834 148857946 - MGP_C3HHeJ_P0063864 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063865.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148824871 148835023 - MGP_C3HHeJ_P0063865 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0063866.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148828548 148840768 - Spata1 protein_coding processed_transcript MGP_C3HHeJ_T0063867.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148834110 148857902 - Spata1 protein_coding processed_transcript MGP_C3HHeJ_T0063868.1 MGP_C3HHeJ_G0027673.1 mouse_genomes_project 3 148842657 148853310 - MGP_C3HHeJ_P0063868 Spata1 protein_coding protein_coding MGP_C3HHeJ_T0060056.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421421 30434133 + MGP_C3HHeJ_P0060056 Ndufb5 protein_coding protein_coding MGP_C3HHeJ_T0060057.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421426 30424551 + Ndufb5 protein_coding retained_intron MGP_C3HHeJ_T0060058.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421432 30436798 + MGP_C3HHeJ_P0060058 Ndufb5 protein_coding protein_coding MGP_C3HHeJ_T0060059.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421456 30436479 + MGP_C3HHeJ_P0060059 Ndufb5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060060.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30421457 30433704 + MGP_C3HHeJ_P0060060 Ndufb5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060061.1 MGP_C3HHeJ_G0026858.1 mouse_genomes_project 3 30425943 30436335 + MGP_C3HHeJ_P0060061 Ndufb5 protein_coding protein_coding MGP_C3HHeJ_T0100576.1 MGP_C3HHeJ_G0038770.1 mouse_genomes_project 3 121105571 121105702 - Gm23432 snoRNA snoRNA MGP_C3HHeJ_T0007613.1 MGP_C3HHeJ_G0006221.1 mouse_genomes_project 3 130411634 130413652 - 4933424H11Rik lincRNA lincRNA MGP_C3HHeJ_T0014176.1 MGP_C3HHeJ_G0012280.1 mouse_genomes_project 3 139898272 139898630 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014161.1 MGP_C3HHeJ_G0012265.1 mouse_genomes_project 3 136852618 136853072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013839.1 MGP_C3HHeJ_G0011943.1 mouse_genomes_project 3 34656959 34657566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099298.1 MGP_C3HHeJ_G0037492.1 mouse_genomes_project 3 109506150 109506273 + Gm23336 snRNA snRNA MGP_C3HHeJ_T0014080.1 MGP_C3HHeJ_G0012184.1 mouse_genomes_project 3 108958015 108958252 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100581.1 MGP_C3HHeJ_G0038775.1 mouse_genomes_project 3 130259708 130259817 + Gm22293 snoRNA snoRNA MGP_C3HHeJ_T0060616.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668357 57679672 - MGP_C3HHeJ_P0060616 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060617.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668444 57713718 - MGP_C3HHeJ_P0060617 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060618.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668445 57672345 - MGP_C3HHeJ_P0060618 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060619.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57668446 57713758 - MGP_C3HHeJ_P0060619 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0060620.1 MGP_C3HHeJ_G0026962.1 mouse_genomes_project 3 57669990 57672286 - MGP_C3HHeJ_P0060620 P2ry12 protein_coding protein_coding MGP_C3HHeJ_T0001117.1 MGP_C3HHeJ_G0001051.1 mouse_genomes_project 3 35079940 35080420 + TEC TEC MGP_C3HHeJ_T0013741.1 MGP_C3HHeJ_G0011845.1 mouse_genomes_project 3 1500850 1501067 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099303.1 MGP_C3HHeJ_G0037497.1 mouse_genomes_project 3 124029096 124029252 + Gm25153 snRNA snRNA MGP_C3HHeJ_T0001151.1 MGP_C3HHeJ_G0001085.1 mouse_genomes_project 3 49458716 49460341 + TEC TEC MGP_C3HHeJ_T0062815.1 MGP_C3HHeJ_G0027469.1 mouse_genomes_project 3 109135319 109142003 - MGP_C3HHeJ_P0062815 Gpr61 protein_coding protein_coding MGP_C3HHeJ_T0062816.1 MGP_C3HHeJ_G0027469.1 mouse_genomes_project 3 109135655 109142003 - MGP_C3HHeJ_P0062816 Gpr61 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007463.1 MGP_C3HHeJ_G0006107.1 mouse_genomes_project 3 52021594 52029951 + Gm43565 lincRNA lincRNA MGP_C3HHeJ_T0063063.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118180863 118238718 + MGP_C3HHeJ_P0063063 Frrs1 protein_coding protein_coding MGP_C3HHeJ_T0063064.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118180966 118224745 + MGP_C3HHeJ_P0063064 Frrs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063065.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118210469 118243554 + MGP_C3HHeJ_P0063065 Frrs1 protein_coding protein_coding MGP_C3HHeJ_T0063066.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118224665 118230458 + Frrs1 protein_coding retained_intron MGP_C3HHeJ_T0063067.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118225415 118232843 + Frrs1 protein_coding retained_intron MGP_C3HHeJ_T0063068.1 MGP_C3HHeJ_G0027520.1 mouse_genomes_project 3 118230446 118237681 + MGP_C3HHeJ_P0063068 Frrs1 protein_coding protein_coding MGP_C3HHeJ_T0063656.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449291 140461569 + MGP_C3HHeJ_P0063656 Adh5 protein_coding protein_coding MGP_C3HHeJ_T0063657.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449309 140452145 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0063658.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449310 140453033 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0063659.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449368 140451600 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0063660.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449368 140454136 + MGP_C3HHeJ_P0063660 Adh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063661.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140449379 140460873 + MGP_C3HHeJ_P0063661 Adh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063662.1 MGP_C3HHeJ_G0027630.1 mouse_genomes_project 3 140460474 140461313 + Adh5 protein_coding retained_intron MGP_C3HHeJ_T0007633.1 MGP_C3HHeJ_G0006238.1 mouse_genomes_project 3 136311937 136512897 - lincRNA lincRNA MGP_C3HHeJ_T0060976.1 MGP_C3HHeJ_G0027046.1 mouse_genomes_project 3 82110493 82150473 - MGP_C3HHeJ_P0060976 Rbm46 protein_coding protein_coding MGP_C3HHeJ_T0060977.1 MGP_C3HHeJ_G0027046.1 mouse_genomes_project 3 82111080 82140642 - MGP_C3HHeJ_P0060977 Rbm46 protein_coding protein_coding MGP_C3HHeJ_T0060978.1 MGP_C3HHeJ_G0027046.1 mouse_genomes_project 3 82111083 82140642 - MGP_C3HHeJ_P0060978 Rbm46 protein_coding protein_coding MGP_C3HHeJ_T0101943.1 MGP_C3HHeJ_G0039908.1 mouse_genomes_project 3 57936528 57936765 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017755.1 MGP_C3HHeJ_G0015277.1 mouse_genomes_project 3 105598566 105622900 - Gm43584 processed_transcript processed_transcript MGP_C3HHeJ_T0001360.1 MGP_C3HHeJ_G0001291.1 mouse_genomes_project 3 159845107 159846688 + TEC TEC MGP_C3HHeJ_T0014054.1 MGP_C3HHeJ_G0012158.1 mouse_genomes_project 3 101861864 101862404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011441.1 MGP_C3HHeJ_G0009574.1 mouse_genomes_project 3 32397503 32397611 + Gm27611 misc_RNA misc_RNA MGP_C3HHeJ_T0060717.1 MGP_C3HHeJ_G0026989.1 mouse_genomes_project 3 64342210 64369282 + MGP_C3HHeJ_P0060717 Tiparp protein_coding protein_coding MGP_C3HHeJ_T0060718.1 MGP_C3HHeJ_G0026989.1 mouse_genomes_project 3 64342260 64361358 + MGP_C3HHeJ_P0060718 Tiparp protein_coding protein_coding MGP_C3HHeJ_T0060719.1 MGP_C3HHeJ_G0026989.1 mouse_genomes_project 3 64359800 64366396 + Tiparp protein_coding processed_transcript MGP_C3HHeJ_T0001218.1 MGP_C3HHeJ_G0001150.1 mouse_genomes_project 3 79348060 79350385 + TEC TEC MGP_C3HHeJ_T0099317.1 MGP_C3HHeJ_G0037511.1 mouse_genomes_project 3 151788572 151788678 - Gm26468 snRNA snRNA MGP_C3HHeJ_T0060630.1 MGP_C3HHeJ_G0026968.1 mouse_genomes_project 3 58498276 58512809 + Aadac protein_coding processed_transcript MGP_C3HHeJ_T0060631.1 MGP_C3HHeJ_G0026968.1 mouse_genomes_project 3 58504150 58514465 + MGP_C3HHeJ_P0060631 Aadac protein_coding protein_coding MGP_C3HHeJ_T0060632.1 MGP_C3HHeJ_G0026968.1 mouse_genomes_project 3 58504265 58508438 + Aadac protein_coding retained_intron MGP_C3HHeJ_T0013954.1 MGP_C3HHeJ_G0012058.1 mouse_genomes_project 3 68938328 68939055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001178.1 MGP_C3HHeJ_G0001110.1 mouse_genomes_project 3 51391936 51392760 + TEC TEC MGP_C3HHeJ_T0098424.1 MGP_C3HHeJ_G0036629.1 mouse_genomes_project 3 102081297 102082373 + Gm42938 sense_intronic sense_intronic MGP_C3HHeJ_T0098417.1 MGP_C3HHeJ_G0036622.1 mouse_genomes_project 3 101114560 101117257 + Gm42868 sense_intronic sense_intronic MGP_C3HHeJ_T0001261.1 MGP_C3HHeJ_G0001193.1 mouse_genomes_project 3 119950286 119954417 + TEC TEC MGP_C3HHeJ_T0007465.1 MGP_C3HHeJ_G0006109.1 mouse_genomes_project 3 52224852 52243566 + Gm31026 lincRNA lincRNA MGP_C3HHeJ_T0007406.1 MGP_C3HHeJ_G0006064.1 mouse_genomes_project 3 31593061 31624306 - 4930431L21Rik lincRNA lincRNA MGP_C3HHeJ_T0007407.1 MGP_C3HHeJ_G0006064.1 mouse_genomes_project 3 31597222 31598202 - 4930431L21Rik lincRNA lincRNA MGP_C3HHeJ_T0013817.1 MGP_C3HHeJ_G0011921.1 mouse_genomes_project 3 24801920 24802189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010446.1 MGP_C3HHeJ_G0008579.1 mouse_genomes_project 3 89869019 89869083 + Mir7012 miRNA miRNA MGP_C3HHeJ_T0059652.1 MGP_C3HHeJ_G0026760.1 mouse_genomes_project 3 2900298 2901790 + MGP_C3HHeJ_P0059652 Gm8797 protein_coding protein_coding MGP_C3HHeJ_T0001220.1 MGP_C3HHeJ_G0001152.1 mouse_genomes_project 3 84243621 84247495 + TEC TEC MGP_C3HHeJ_T0007602.1 MGP_C3HHeJ_G0006212.1 mouse_genomes_project 3 123847084 123858456 + Gm40190 lincRNA lincRNA MGP_C3HHeJ_T0014022.1 MGP_C3HHeJ_G0012126.1 mouse_genomes_project 3 93190906 93191361 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059886.1 MGP_C3HHeJ_G0026826.1 mouse_genomes_project 3 25387431 25419155 - MGP_C3HHeJ_P0059886 Tmem212 protein_coding protein_coding MGP_C3HHeJ_T0001290.1 MGP_C3HHeJ_G0001222.1 mouse_genomes_project 3 128380720 128382636 + TEC TEC MGP_C3HHeJ_T0060453.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677441 52707351 + MGP_C3HHeJ_P0060453 Postn protein_coding protein_coding MGP_C3HHeJ_T0060454.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677441 52707354 + MGP_C3HHeJ_P0060454 Postn protein_coding protein_coding MGP_C3HHeJ_T0060455.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677457 52707351 + MGP_C3HHeJ_P0060455 Postn protein_coding protein_coding MGP_C3HHeJ_T0060456.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52677475 52706769 + MGP_C3HHeJ_P0060456 Postn protein_coding protein_coding MGP_C3HHeJ_T0060457.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52693881 52706964 + MGP_C3HHeJ_P0060457 Postn protein_coding protein_coding MGP_C3HHeJ_T0060458.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52694801 52701029 + Postn protein_coding retained_intron MGP_C3HHeJ_T0060459.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52699423 52706804 + Postn protein_coding retained_intron MGP_C3HHeJ_T0060460.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52699425 52706899 + Postn protein_coding retained_intron MGP_C3HHeJ_T0060461.1 MGP_C3HHeJ_G0026927.1 mouse_genomes_project 3 52705205 52706710 + Postn protein_coding retained_intron MGP_C3HHeJ_T0014172.1 MGP_C3HHeJ_G0012276.1 mouse_genomes_project 3 138263970 138265475 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060539.1 MGP_C3HHeJ_G0026942.1 mouse_genomes_project 3 54129044 54131536 + MGP_C3HHeJ_P0060539 Mab21l1 protein_coding protein_coding MGP_C3HHeJ_T0063212.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124669784 124709097 - MGP_C3HHeJ_P0063212 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063213.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124669784 124831034 - MGP_C3HHeJ_P0063213 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063214.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124669784 124830983 - MGP_C3HHeJ_P0063214 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063215.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124702879 124831034 - MGP_C3HHeJ_P0063215 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063216.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124704962 124709273 - MGP_C3HHeJ_P0063216 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063217.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124707243 124710962 - MGP_C3HHeJ_P0063217 Synpo2 protein_coding protein_coding MGP_C3HHeJ_T0063218.1 MGP_C3HHeJ_G0027548.1 mouse_genomes_project 3 124771223 124831036 - Synpo2 protein_coding processed_transcript MGP_C3HHeJ_T0061263.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979325 88002426 - MGP_C3HHeJ_P0061263 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061264.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979328 87984506 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061265.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979328 87991997 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061266.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87979328 87993406 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061267.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993052 87994818 - MGP_C3HHeJ_P0061267 Sema4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061268.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993190 87995153 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061269.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993402 87998697 - MGP_C3HHeJ_P0061269 Sema4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061270.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993464 88002484 - MGP_C3HHeJ_P0061270 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061271.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993935 88002413 - MGP_C3HHeJ_P0061271 Sema4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061272.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87993952 88002259 - MGP_C3HHeJ_P0061272 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061273.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87995410 87998688 - MGP_C3HHeJ_P0061273 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061274.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87996201 87998225 - Sema4a protein_coding retained_intron MGP_C3HHeJ_T0061275.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87996459 87999798 - MGP_C3HHeJ_P0061275 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061276.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87998147 87999819 - MGP_C3HHeJ_P0061276 Sema4a protein_coding protein_coding MGP_C3HHeJ_T0061277.1 MGP_C3HHeJ_G0027112.1 mouse_genomes_project 3 87999107 87999819 - Sema4a protein_coding processed_transcript MGP_C3HHeJ_T0100523.1 MGP_C3HHeJ_G0038717.1 mouse_genomes_project 3 14505761 14505900 - Gm24963 snoRNA snoRNA MGP_C3HHeJ_T0001111.1 MGP_C3HHeJ_G0001045.1 mouse_genomes_project 3 32407955 32408586 - TEC TEC MGP_C3HHeJ_T0099243.1 MGP_C3HHeJ_G0037437.1 mouse_genomes_project 3 37561497 37561657 + Gm23796 snRNA snRNA MGP_C3HHeJ_T0063335.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129480834 129515217 - MGP_C3HHeJ_P0063335 Ap1ar protein_coding protein_coding MGP_C3HHeJ_T0063336.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129480839 129515205 - MGP_C3HHeJ_P0063336 Ap1ar protein_coding protein_coding MGP_C3HHeJ_T0063337.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129481093 129482742 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063338.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129486261 129486896 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063339.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129487444 129492871 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063340.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129490897 129492560 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063341.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129494924 129503709 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063342.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129495976 129514925 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063343.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129495977 129500350 - Ap1ar protein_coding retained_intron MGP_C3HHeJ_T0063344.1 MGP_C3HHeJ_G0027566.1 mouse_genomes_project 3 129496012 129514950 - MGP_C3HHeJ_P0063344 Ap1ar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061926.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95120237 95153509 + MGP_C3HHeJ_P0061926 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061927.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95120337 95152827 + MGP_C3HHeJ_P0061927 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061928.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95120382 95152823 + MGP_C3HHeJ_P0061928 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061929.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95121622 95153447 + MGP_C3HHeJ_P0061929 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061930.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95121649 95141885 + MGP_C3HHeJ_P0061930 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061931.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95144869 95152856 + MGP_C3HHeJ_P0061931 Pi4kb protein_coding protein_coding MGP_C3HHeJ_T0061932.1 MGP_C3HHeJ_G0027267.1 mouse_genomes_project 3 95150990 95152924 + Pi4kb protein_coding processed_transcript MGP_C3HHeJ_T0101404.1 MGP_C3HHeJ_G0039443.1 mouse_genomes_project 3 29255732 29329116 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101405.1 MGP_C3HHeJ_G0039443.1 mouse_genomes_project 3 29309980 29338038 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101406.1 MGP_C3HHeJ_G0039443.1 mouse_genomes_project 3 29321770 29338038 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0001264.1 MGP_C3HHeJ_G0001196.1 mouse_genomes_project 3 121197809 121200491 - TEC TEC MGP_C3HHeJ_T0062211.1 MGP_C3HHeJ_G0027325.1 mouse_genomes_project 3 96863363 96868536 - MGP_C3HHeJ_P0062211 Polr3gl protein_coding protein_coding MGP_C3HHeJ_T0062212.1 MGP_C3HHeJ_G0027325.1 mouse_genomes_project 3 96863896 96867178 - Polr3gl protein_coding retained_intron MGP_C3HHeJ_T0062213.1 MGP_C3HHeJ_G0027325.1 mouse_genomes_project 3 96863904 96865659 - Polr3gl protein_coding retained_intron MGP_C3HHeJ_T0062553.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104658138 104714933 + MGP_C3HHeJ_P0062553 Ptpn22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062554.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104658276 104714946 + MGP_C3HHeJ_P0062554 Ptpn22 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062555.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104658898 104677606 + Ptpn22 protein_coding processed_transcript MGP_C3HHeJ_T0062556.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104678909 104680792 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0062557.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104687124 104689322 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0062558.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104687214 104705065 + Ptpn22 protein_coding processed_transcript MGP_C3HHeJ_T0062559.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104689773 104712147 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0062560.1 MGP_C3HHeJ_G0027404.1 mouse_genomes_project 3 104703717 104714935 + Ptpn22 protein_coding retained_intron MGP_C3HHeJ_T0007683.1 MGP_C3HHeJ_G0006280.1 mouse_genomes_project 3 151751677 151793348 + Gm42649 lincRNA lincRNA MGP_C3HHeJ_T0014143.1 MGP_C3HHeJ_G0012247.1 mouse_genomes_project 3 131038954 131039718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100567.1 MGP_C3HHeJ_G0038761.1 mouse_genomes_project 3 104166314 104166416 + Gm25009 snoRNA snoRNA MGP_C3HHeJ_T0062808.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109077901 109086871 + MGP_C3HHeJ_P0062808 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062809.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109077992 109081827 + MGP_C3HHeJ_P0062809 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062810.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109078250 109083856 + MGP_C3HHeJ_P0062810 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062811.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109078304 109086869 + Gnat2 protein_coding retained_intron MGP_C3HHeJ_T0062812.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109079560 109083871 + MGP_C3HHeJ_P0062812 Gnat2 protein_coding protein_coding MGP_C3HHeJ_T0062813.1 MGP_C3HHeJ_G0027467.1 mouse_genomes_project 3 109082681 109086730 + Gnat2 protein_coding processed_transcript MGP_C3HHeJ_T0007536.1 MGP_C3HHeJ_G0006158.1 mouse_genomes_project 3 93192359 93360135 - lincRNA lincRNA MGP_C3HHeJ_T0001105.1 MGP_C3HHeJ_G0001039.1 mouse_genomes_project 3 30778828 30781266 - TEC TEC MGP_C3HHeJ_T0060474.1 MGP_C3HHeJ_G0026929.1 mouse_genomes_project 3 53039573 53040750 - MGP_C3HHeJ_P0060474 Gm21958 protein_coding protein_coding MGP_C3HHeJ_T0013984.1 MGP_C3HHeJ_G0012088.1 mouse_genomes_project 3 79298802 79299882 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014146.1 MGP_C3HHeJ_G0012250.1 mouse_genomes_project 3 131938707 131939300 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100535.1 MGP_C3HHeJ_G0038729.1 mouse_genomes_project 3 47683739 47683867 + Gm22480 snoRNA snoRNA MGP_C3HHeJ_T0013772.1 MGP_C3HHeJ_G0011876.1 mouse_genomes_project 3 10229402 10230366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060354.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47944675 47958634 - MGP_C3HHeJ_P0060354 Pcdh18 protein_coding protein_coding MGP_C3HHeJ_T0060355.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47944677 47958603 - MGP_C3HHeJ_P0060355 Pcdh18 protein_coding protein_coding MGP_C3HHeJ_T0060356.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47946657 47958643 - Pcdh18 protein_coding processed_transcript MGP_C3HHeJ_T0060357.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47953734 47956783 - MGP_C3HHeJ_P0060357 Pcdh18 protein_coding protein_coding MGP_C3HHeJ_T0060358.1 MGP_C3HHeJ_G0026906.1 mouse_genomes_project 3 47956144 47958601 - Pcdh18 protein_coding processed_transcript MGP_C3HHeJ_T0101951.1 MGP_C3HHeJ_G0039916.1 mouse_genomes_project 3 78260090 78260620 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0059668.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5882413 5888416 - MGP_C3HHeJ_P0059668 Hey1 protein_coding protein_coding MGP_C3HHeJ_T0059669.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5883753 5888144 - Hey1 protein_coding retained_intron MGP_C3HHeJ_T0059670.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5883850 5887785 - Hey1 protein_coding retained_intron MGP_C3HHeJ_T0059671.1 MGP_C3HHeJ_G0026766.1 mouse_genomes_project 3 5884596 5888124 - Hey1 protein_coding retained_intron MGP_C3HHeJ_T0013904.1 MGP_C3HHeJ_G0012008.1 mouse_genomes_project 3 56098804 56099281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013783.1 MGP_C3HHeJ_G0011887.1 mouse_genomes_project 3 12219255 12219474 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061533.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88966919 88980074 + MGP_C3HHeJ_P0061533 protein_coding protein_coding MGP_C3HHeJ_T0061534.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967027 88976200 + MGP_C3HHeJ_P0061534 protein_coding protein_coding MGP_C3HHeJ_T0061535.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967027 88980153 + MGP_C3HHeJ_P0061535 protein_coding protein_coding MGP_C3HHeJ_T0061536.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967047 88972559 + MGP_C3HHeJ_P0061536 protein_coding protein_coding MGP_C3HHeJ_T0061537.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967070 88976356 + MGP_C3HHeJ_P0061537 protein_coding protein_coding MGP_C3HHeJ_T0061538.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967090 88980074 + MGP_C3HHeJ_P0061538 protein_coding protein_coding MGP_C3HHeJ_T0061539.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88967167 88980147 + MGP_C3HHeJ_P0061539 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061540.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88968947 88972358 + protein_coding retained_intron MGP_C3HHeJ_T0061541.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88969942 88978764 + MGP_C3HHeJ_P0061541 protein_coding protein_coding MGP_C3HHeJ_T0061542.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88969956 88976356 + MGP_C3HHeJ_P0061542 protein_coding protein_coding MGP_C3HHeJ_T0061543.1 MGP_C3HHeJ_G0027154.1 mouse_genomes_project 3 88972840 88977012 + protein_coding processed_transcript MGP_C3HHeJ_T0014000.1 MGP_C3HHeJ_G0012104.1 mouse_genomes_project 3 86495228 86495537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063609.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139859054 139909319 + MGP_C3HHeJ_P0063609 Dnajb14 protein_coding protein_coding MGP_C3HHeJ_T0063610.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139859266 139889276 + Dnajb14 protein_coding retained_intron MGP_C3HHeJ_T0063611.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139859560 139895525 + MGP_C3HHeJ_P0063611 Dnajb14 protein_coding protein_coding MGP_C3HHeJ_T0063612.1 MGP_C3HHeJ_G0027617.1 mouse_genomes_project 3 139898493 139902160 + Dnajb14 protein_coding retained_intron MGP_C3HHeJ_T0063500.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135270893 135352556 - MGP_C3HHeJ_P0063500 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063501.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135270897 135282102 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063502.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135271053 135352534 - MGP_C3HHeJ_P0063502 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063503.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135273060 135279031 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063504.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135274740 135283857 - MGP_C3HHeJ_P0063504 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063505.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135282361 135286213 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063506.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135286342 135287969 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063507.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135295805 135353305 - MGP_C3HHeJ_P0063507 Tet2 protein_coding protein_coding MGP_C3HHeJ_T0063508.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135322769 135352468 - Tet2 protein_coding retained_intron MGP_C3HHeJ_T0063509.1 MGP_C3HHeJ_G0027599.1 mouse_genomes_project 3 135346881 135352452 - Tet2 protein_coding processed_transcript MGP_C3HHeJ_T0013757.1 MGP_C3HHeJ_G0011861.1 mouse_genomes_project 3 6123965 6124298 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063034.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888704 117915135 + MGP_C3HHeJ_P0063034 Sass6 protein_coding protein_coding MGP_C3HHeJ_T0063035.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888725 117899051 + Sass6 protein_coding processed_transcript MGP_C3HHeJ_T0063036.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888734 117924420 + MGP_C3HHeJ_P0063036 Sass6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063037.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117888798 117922216 + MGP_C3HHeJ_P0063037 Sass6 protein_coding protein_coding MGP_C3HHeJ_T0063039.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117906848 117912760 + Sass6 protein_coding processed_transcript MGP_C3HHeJ_T0063041.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117914991 117920968 + Sass6 protein_coding retained_intron MGP_C3HHeJ_T0063042.1 MGP_C3HHeJ_G0027515.1 mouse_genomes_project 3 117919350 117922534 + Sass6 protein_coding retained_intron MGP_C3HHeJ_T0001289.1 MGP_C3HHeJ_G0001221.1 mouse_genomes_project 3 128372064 128375667 + TEC TEC MGP_C3HHeJ_T0014187.1 MGP_C3HHeJ_G0012291.1 mouse_genomes_project 3 142571471 142572021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001231.1 MGP_C3HHeJ_G0001163.1 mouse_genomes_project 3 95860449 95862189 + TEC TEC MGP_C3HHeJ_T0061087.1 MGP_C3HHeJ_G0027075.1 mouse_genomes_project 3 86514765 86613273 - MGP_C3HHeJ_P0061087 Kirrel protein_coding protein_coding MGP_C3HHeJ_T0061088.1 MGP_C3HHeJ_G0027075.1 mouse_genomes_project 3 86514773 86613320 - MGP_C3HHeJ_P0061088 Kirrel protein_coding protein_coding MGP_C3HHeJ_T0061089.1 MGP_C3HHeJ_G0027075.1 mouse_genomes_project 3 86520800 86613123 - MGP_C3HHeJ_P0061089 Kirrel protein_coding protein_coding MGP_C3HHeJ_T0001233.1 MGP_C3HHeJ_G0001165.1 mouse_genomes_project 3 96517741 96519355 + TEC TEC MGP_C3HHeJ_T0001137.1 MGP_C3HHeJ_G0001071.1 mouse_genomes_project 3 43228362 43230878 - TEC TEC MGP_C3HHeJ_T0001339.1 MGP_C3HHeJ_G0001270.1 mouse_genomes_project 3 150994663 150995203 + TEC TEC MGP_C3HHeJ_T0059757.1 MGP_C3HHeJ_G0026797.1 mouse_genomes_project 3 13171722 13271361 - MGP_C3HHeJ_P0059757 Gm5150 protein_coding protein_coding MGP_C3HHeJ_T0059758.1 MGP_C3HHeJ_G0026797.1 mouse_genomes_project 3 13172921 13271256 - MGP_C3HHeJ_P0059758 Gm5150 protein_coding protein_coding MGP_C3HHeJ_T0060218.1 MGP_C3HHeJ_G0026884.1 mouse_genomes_project 3 35160302 35169203 + MGP_C3HHeJ_P0060218 Bbs12 protein_coding protein_coding MGP_C3HHeJ_T0060219.1 MGP_C3HHeJ_G0026884.1 mouse_genomes_project 3 35160304 35169206 + MGP_C3HHeJ_P0060219 Bbs12 protein_coding protein_coding MGP_C3HHeJ_T0062674.1 MGP_C3HHeJ_G0027432.1 mouse_genomes_project 3 107038175 107141370 - MGP_C3HHeJ_P0062674 Chil3 protein_coding protein_coding MGP_C3HHeJ_T0062675.1 MGP_C3HHeJ_G0027432.1 mouse_genomes_project 3 107039218 107059804 - MGP_C3HHeJ_P0062675 Chil3 protein_coding protein_coding MGP_C3HHeJ_T0062676.1 MGP_C3HHeJ_G0027432.1 mouse_genomes_project 3 107065732 107070199 - Chil3 protein_coding retained_intron MGP_C3HHeJ_T0007493.1 MGP_C3HHeJ_G0006130.1 mouse_genomes_project 3 74876882 74907541 + lincRNA lincRNA MGP_C3HHeJ_T0063554.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382714 137488243 + MGP_C3HHeJ_P0063554 Manba protein_coding protein_coding MGP_C3HHeJ_T0063555.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382714 137471295 + MGP_C3HHeJ_P0063555 Manba protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063556.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382722 137471256 + Manba protein_coding retained_intron MGP_C3HHeJ_T0063557.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137382728 137424749 + Manba protein_coding retained_intron MGP_C3HHeJ_T0063558.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137429068 137455568 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063559.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137434863 137436488 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063560.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137457896 137465535 + Manba protein_coding retained_intron MGP_C3HHeJ_T0063561.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137463100 137470498 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063562.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137464939 137472490 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063563.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137465010 137478959 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0063564.1 MGP_C3HHeJ_G0027608.1 mouse_genomes_project 3 137478919 137484392 + Manba protein_coding processed_transcript MGP_C3HHeJ_T0001187.1 MGP_C3HHeJ_G0001119.1 mouse_genomes_project 3 54477671 54480693 - TEC TEC MGP_C3HHeJ_T0001262.1 MGP_C3HHeJ_G0001194.1 mouse_genomes_project 3 119956424 119959935 + TEC TEC MGP_C3HHeJ_T0001196.1 MGP_C3HHeJ_G0001128.1 mouse_genomes_project 3 59039121 59043117 + TEC TEC MGP_C3HHeJ_T0060720.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484150 64504002 + MGP_C3HHeJ_P0060720 Lekr1 protein_coding protein_coding MGP_C3HHeJ_T0060721.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484157 64502047 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060722.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484168 64558388 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060723.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484190 64486359 + Lekr1 protein_coding retained_intron MGP_C3HHeJ_T0060724.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484204 64591998 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060725.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64484239 64547233 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060726.1 MGP_C3HHeJ_G0026990.1 mouse_genomes_project 3 64501875 64651064 + Lekr1 protein_coding processed_transcript MGP_C3HHeJ_T0060794.1 MGP_C3HHeJ_G0027006.1 mouse_genomes_project 3 67722055 67724633 + MGP_C3HHeJ_P0060794 1110032F04Rik protein_coding protein_coding MGP_C3HHeJ_T0004188.1 MGP_C3HHeJ_G0003680.1 mouse_genomes_project 3 79070541 79097986 - Gm36569 antisense antisense MGP_C3HHeJ_T0098442.1 MGP_C3HHeJ_G0036647.1 mouse_genomes_project 3 104962932 104964589 - Gm42701 sense_intronic sense_intronic MGP_C3HHeJ_T0014009.1 MGP_C3HHeJ_G0012113.1 mouse_genomes_project 3 90347326 90348229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060256.1 MGP_C3HHeJ_G0026892.1 mouse_genomes_project 3 38446825 38471720 + MGP_C3HHeJ_P0060256 Intu protein_coding protein_coding MGP_C3HHeJ_T0060257.1 MGP_C3HHeJ_G0026892.1 mouse_genomes_project 3 38456304 38525206 + MGP_C3HHeJ_P0060257 Intu protein_coding protein_coding MGP_C3HHeJ_T0060258.1 MGP_C3HHeJ_G0026892.1 mouse_genomes_project 3 38493461 38513342 + MGP_C3HHeJ_P0060258 Intu protein_coding protein_coding MGP_C3HHeJ_T0014079.1 MGP_C3HHeJ_G0012183.1 mouse_genomes_project 3 108893339 108893487 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007435.1 MGP_C3HHeJ_G0006088.1 mouse_genomes_project 3 38418443 38437626 - 1700017G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007436.1 MGP_C3HHeJ_G0006088.1 mouse_genomes_project 3 38422006 38423353 - 1700017G19Rik lincRNA lincRNA MGP_C3HHeJ_T0004247.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104566799 104569267 + Gm15886 antisense antisense MGP_C3HHeJ_T0004248.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104566820 104584338 + Gm15886 antisense antisense MGP_C3HHeJ_T0004249.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104567155 104572615 + Gm15886 antisense antisense MGP_C3HHeJ_T0004250.1 MGP_C3HHeJ_G0003720.1 mouse_genomes_project 3 104572033 104573026 + Gm15886 antisense antisense MGP_C3HHeJ_T0010445.1 MGP_C3HHeJ_G0008578.1 mouse_genomes_project 3 89652604 89652684 + Mir190b miRNA miRNA MGP_C3HHeJ_T0007513.1 MGP_C3HHeJ_G0006147.1 mouse_genomes_project 3 84939802 84948878 - Gm42812 lincRNA lincRNA MGP_C3HHeJ_T0001130.1 MGP_C3HHeJ_G0001064.1 mouse_genomes_project 3 38896923 38897846 - TEC TEC MGP_C3HHeJ_T0099314.1 MGP_C3HHeJ_G0037508.1 mouse_genomes_project 3 144887683 144887788 - Gm24457 snRNA snRNA MGP_C3HHeJ_T0062782.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915037 108920112 - MGP_C3HHeJ_P0062782 protein_coding protein_coding MGP_C3HHeJ_T0062783.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915038 108920097 - MGP_C3HHeJ_P0062783 protein_coding protein_coding MGP_C3HHeJ_T0062784.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915152 108919725 - MGP_C3HHeJ_P0062784 protein_coding protein_coding MGP_C3HHeJ_T0062785.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108915296 108919746 - MGP_C3HHeJ_P0062785 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062786.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108917184 108919776 - MGP_C3HHeJ_P0062786 protein_coding protein_coding MGP_C3HHeJ_T0062787.1 MGP_C3HHeJ_G0027461.1 mouse_genomes_project 3 108918008 108920078 - protein_coding processed_transcript MGP_C3HHeJ_T0007676.1 MGP_C3HHeJ_G0006275.1 mouse_genomes_project 3 149769633 149780806 + Gm36831 lincRNA lincRNA MGP_C3HHeJ_T0013880.1 MGP_C3HHeJ_G0011984.1 mouse_genomes_project 3 47985093 47985556 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013802.1 MGP_C3HHeJ_G0011906.1 mouse_genomes_project 3 18133925 18134135 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004285.1 MGP_C3HHeJ_G0003739.1 mouse_genomes_project 3 123936176 123952692 - Gm42835 antisense antisense MGP_C3HHeJ_T0062658.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106836622 106843208 + Wdr77 protein_coding retained_intron MGP_C3HHeJ_T0062659.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106836628 106847152 + MGP_C3HHeJ_P0062659 Wdr77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062660.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106836698 106844438 + MGP_C3HHeJ_P0062660 Wdr77 protein_coding protein_coding MGP_C3HHeJ_T0062661.1 MGP_C3HHeJ_G0027427.1 mouse_genomes_project 3 106841564 106842667 + Wdr77 protein_coding retained_intron MGP_C3HHeJ_T0060593.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57279366 57315394 - MGP_C3HHeJ_P0060593 Clrn1 protein_coding protein_coding MGP_C3HHeJ_T0060594.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57280553 57315394 - MGP_C3HHeJ_P0060594 Clrn1 protein_coding protein_coding MGP_C3HHeJ_T0060595.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57281319 57315522 - MGP_C3HHeJ_P0060595 Clrn1 protein_coding protein_coding MGP_C3HHeJ_T0060596.1 MGP_C3HHeJ_G0026956.1 mouse_genomes_project 3 57281701 57295018 - Clrn1 protein_coding retained_intron MGP_C3HHeJ_T0061399.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88677999 88694075 - MGP_C3HHeJ_P0061399 Hcn3 protein_coding protein_coding MGP_C3HHeJ_T0061400.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88682932 88685434 - Hcn3 protein_coding retained_intron MGP_C3HHeJ_T0061401.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88683049 88685416 - Hcn3 protein_coding retained_intron MGP_C3HHeJ_T0061402.1 MGP_C3HHeJ_G0027132.1 mouse_genomes_project 3 88685682 88693859 - Hcn3 protein_coding processed_transcript MGP_C3HHeJ_T0062389.1 MGP_C3HHeJ_G0027370.1 mouse_genomes_project 3 101455278 101535767 + MGP_C3HHeJ_P0062389 Vtcn1 protein_coding protein_coding MGP_C3HHeJ_T0063194.1 MGP_C3HHeJ_G0027543.1 mouse_genomes_project 3 124481433 124485867 + MGP_C3HHeJ_P0063194 Fabp2 protein_coding protein_coding MGP_C3HHeJ_T0001313.1 MGP_C3HHeJ_G0001244.1 mouse_genomes_project 3 132399822 132402639 + TEC TEC MGP_C3HHeJ_T0001361.1 MGP_C3HHeJ_G0001292.1 mouse_genomes_project 3 159981258 159982457 - TEC TEC MGP_C3HHeJ_T0098289.1 MGP_C3HHeJ_G0036501.1 mouse_genomes_project 3 88245281 88245408 + Gm25820 scaRNA scaRNA MGP_C3HHeJ_T0013801.1 MGP_C3HHeJ_G0011905.1 mouse_genomes_project 3 17733204 17734177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062534.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104596891 104604921 - MGP_C3HHeJ_P0062534 Dclre1b protein_coding protein_coding MGP_C3HHeJ_T0062535.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104598703 104605158 - Dclre1b protein_coding retained_intron MGP_C3HHeJ_T0062536.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104598721 104604013 - MGP_C3HHeJ_P0062536 Dclre1b protein_coding protein_coding MGP_C3HHeJ_T0062537.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104599417 104603470 - Dclre1b protein_coding retained_intron MGP_C3HHeJ_T0062538.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104599845 104605025 - MGP_C3HHeJ_P0062538 Dclre1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062539.1 MGP_C3HHeJ_G0027400.1 mouse_genomes_project 3 104601751 104605222 - MGP_C3HHeJ_P0062539 Dclre1b protein_coding protein_coding MGP_C3HHeJ_T0061789.1 MGP_C3HHeJ_G0027216.1 mouse_genomes_project 3 92392560 92394576 - MGP_C3HHeJ_P0061789 2310046K23Rik protein_coding protein_coding MGP_C3HHeJ_T0013882.1 MGP_C3HHeJ_G0011986.1 mouse_genomes_project 3 48373598 48373830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101188.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64321393 64341985 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101189.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64322827 64323301 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101190.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64329461 64343180 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101191.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64341289 64343022 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101192.1 MGP_C3HHeJ_G0039333.1 mouse_genomes_project 3 64341323 64343188 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0004190.1 MGP_C3HHeJ_G0003682.1 mouse_genomes_project 3 80291691 80294730 - Gm16000 antisense antisense MGP_C3HHeJ_T0007408.1 MGP_C3HHeJ_G0006065.1 mouse_genomes_project 3 31746660 31748835 - Gm43077 lincRNA lincRNA MGP_C3HHeJ_T0004277.1 MGP_C3HHeJ_G0003733.1 mouse_genomes_project 3 111318319 111322011 + C130013H08Rik antisense antisense MGP_C3HHeJ_T0010432.1 MGP_C3HHeJ_G0008565.1 mouse_genomes_project 3 64477208 64477347 + Mir8120 miRNA miRNA MGP_C3HHeJ_T0060517.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53587106 53891708 + MGP_C3HHeJ_P0060517 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060518.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53587268 53823308 + MGP_C3HHeJ_P0060518 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060519.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53587268 53891704 + MGP_C3HHeJ_P0060519 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060520.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53591813 53602296 + MGP_C3HHeJ_P0060520 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060521.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53592021 53602266 + Dclk1 protein_coding retained_intron MGP_C3HHeJ_T0060522.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53699617 53829923 + Dclk1 protein_coding processed_transcript MGP_C3HHeJ_T0060523.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53802168 53832556 + Dclk1 protein_coding retained_intron MGP_C3HHeJ_T0060524.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53812914 53823310 + MGP_C3HHeJ_P0060524 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060525.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53812944 53891704 + MGP_C3HHeJ_P0060525 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060526.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813085 53889192 + MGP_C3HHeJ_P0060526 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060527.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813102 53887775 + MGP_C3HHeJ_P0060527 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060528.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813102 53869840 + MGP_C3HHeJ_P0060528 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060529.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813102 53889191 + MGP_C3HHeJ_P0060529 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060530.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53813158 53874922 + MGP_C3HHeJ_P0060530 Dclk1 protein_coding protein_coding MGP_C3HHeJ_T0060532.1 MGP_C3HHeJ_G0026939.1 mouse_genomes_project 3 53880518 53886952 + Dclk1 protein_coding processed_transcript MGP_C3HHeJ_T0001348.1 MGP_C3HHeJ_G0001279.1 mouse_genomes_project 3 154979964 154983019 - TEC TEC MGP_C3HHeJ_T0007636.1 MGP_C3HHeJ_G0006241.1 mouse_genomes_project 3 138921020 138923323 - Gm43356 lincRNA lincRNA MGP_C3HHeJ_T0014102.1 MGP_C3HHeJ_G0012206.1 mouse_genomes_project 3 115064014 115065666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001190.1 MGP_C3HHeJ_G0001122.1 mouse_genomes_project 3 56029039 56030215 - TEC TEC MGP_C3HHeJ_T0013876.1 MGP_C3HHeJ_G0011980.1 mouse_genomes_project 3 47379209 47379565 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007424.1 MGP_C3HHeJ_G0006080.1 mouse_genomes_project 3 35465385 35466752 + 4930594O21Rik lincRNA lincRNA MGP_C3HHeJ_T0007425.1 MGP_C3HHeJ_G0006080.1 mouse_genomes_project 3 35465395 35466302 + 4930594O21Rik lincRNA lincRNA MGP_C3HHeJ_T0014208.1 MGP_C3HHeJ_G0012312.1 mouse_genomes_project 3 154546289 154546767 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061834.1 MGP_C3HHeJ_G0027250.1 mouse_genomes_project 3 94372736 94395084 + MGP_C3HHeJ_P0061834 Them4 protein_coding protein_coding MGP_C3HHeJ_T0061835.1 MGP_C3HHeJ_G0027250.1 mouse_genomes_project 3 94372777 94380814 + Them4 protein_coding retained_intron MGP_C3HHeJ_T0061836.1 MGP_C3HHeJ_G0027250.1 mouse_genomes_project 3 94372783 94388683 + Them4 protein_coding retained_intron MGP_C3HHeJ_T0013777.1 MGP_C3HHeJ_G0011881.1 mouse_genomes_project 3 11230070 11231427 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064181.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615906 162711592 + MGP_C3HHeJ_P0064181 Wls protein_coding protein_coding MGP_C3HHeJ_T0064182.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615971 162714237 + MGP_C3HHeJ_P0064182 Wls protein_coding protein_coding MGP_C3HHeJ_T0064183.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615973 162689134 + Wls protein_coding retained_intron MGP_C3HHeJ_T0064184.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615973 162690109 + Wls protein_coding retained_intron MGP_C3HHeJ_T0064185.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162615973 162710472 + MGP_C3HHeJ_P0064185 Wls protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064186.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162616144 162650697 + Wls protein_coding retained_intron MGP_C3HHeJ_T0064187.1 MGP_C3HHeJ_G0027720.1 mouse_genomes_project 3 162624673 162627497 + Wls protein_coding retained_intron MGP_C3HHeJ_T0061796.1 MGP_C3HHeJ_G0027221.1 mouse_genomes_project 3 92510856 92512597 - MGP_C3HHeJ_P0061796 Lce1a1 protein_coding protein_coding MGP_C3HHeJ_T0014169.1 MGP_C3HHeJ_G0012273.1 mouse_genomes_project 3 137829181 137829728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013914.1 MGP_C3HHeJ_G0012018.1 mouse_genomes_project 3 58197424 58197538 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101409.1 MGP_C3HHeJ_G0039445.1 mouse_genomes_project 3 57222205 57225831 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101410.1 MGP_C3HHeJ_G0039445.1 mouse_genomes_project 3 57223940 57247549 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0061148.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87413123 87422639 + MGP_C3HHeJ_P0061148 Hdgf protein_coding protein_coding MGP_C3HHeJ_T0061149.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87413547 87421155 + MGP_C3HHeJ_P0061149 Hdgf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061150.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87414029 87420672 + Hdgf protein_coding processed_transcript MGP_C3HHeJ_T0061151.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87416538 87420688 + Hdgf protein_coding processed_transcript MGP_C3HHeJ_T0061152.1 MGP_C3HHeJ_G0027088.1 mouse_genomes_project 3 87420466 87421283 + Hdgf protein_coding retained_intron MGP_C3HHeJ_T0063488.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134917214 135039757 - MGP_C3HHeJ_P0063488 protein_coding protein_coding MGP_C3HHeJ_T0063489.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134921368 134937476 - MGP_C3HHeJ_P0063489 protein_coding protein_coding MGP_C3HHeJ_T0063490.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134959532 135039757 - MGP_C3HHeJ_P0063490 protein_coding protein_coding MGP_C3HHeJ_T0063491.1 MGP_C3HHeJ_G0027597.1 mouse_genomes_project 3 134972407 135039817 - MGP_C3HHeJ_P0063491 protein_coding protein_coding MGP_C3HHeJ_T0101968.1 MGP_C3HHeJ_G0039933.1 mouse_genomes_project 3 99173578 99182384 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013771.1 MGP_C3HHeJ_G0011875.1 mouse_genomes_project 3 9967467 9968053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011452.1 MGP_C3HHeJ_G0009585.1 mouse_genomes_project 3 103829756 103830056 + Gm23820 misc_RNA misc_RNA MGP_C3HHeJ_T0014108.1 MGP_C3HHeJ_G0012212.1 mouse_genomes_project 3 117814952 117815394 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007490.1 MGP_C3HHeJ_G0006128.1 mouse_genomes_project 3 73083511 73091558 - Gm20356 lincRNA lincRNA MGP_C3HHeJ_T0061195.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87602810 87643292 + MGP_C3HHeJ_P0061195 Iqgap3 protein_coding protein_coding MGP_C3HHeJ_T0061196.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87602859 87608430 + Iqgap3 protein_coding retained_intron MGP_C3HHeJ_T0061197.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87602867 87630645 + MGP_C3HHeJ_P0061197 Iqgap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061198.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87607027 87608423 + Iqgap3 protein_coding retained_intron MGP_C3HHeJ_T0061199.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87627032 87643288 + MGP_C3HHeJ_P0061199 Iqgap3 protein_coding protein_coding MGP_C3HHeJ_T0061200.1 MGP_C3HHeJ_G0027099.1 mouse_genomes_project 3 87629370 87634404 + Iqgap3 protein_coding retained_intron MGP_C3HHeJ_T0013822.1 MGP_C3HHeJ_G0011926.1 mouse_genomes_project 3 28413527 28413795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013891.1 MGP_C3HHeJ_G0011995.1 mouse_genomes_project 3 51232768 51233087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007539.1 MGP_C3HHeJ_G0006161.1 mouse_genomes_project 3 95568110 95584025 - lincRNA lincRNA MGP_C3HHeJ_T0099262.1 MGP_C3HHeJ_G0037456.1 mouse_genomes_project 3 64915695 64915848 - Gm26442 snRNA snRNA MGP_C3HHeJ_T0001272.1 MGP_C3HHeJ_G0001204.1 mouse_genomes_project 3 123309488 123310561 - TEC TEC MGP_C3HHeJ_T0061058.1 MGP_C3HHeJ_G0027067.1 mouse_genomes_project 3 85279516 85299343 - MGP_C3HHeJ_P0061058 Glt28d2 protein_coding protein_coding MGP_C3HHeJ_T0061140.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87288708 87308811 + MGP_C3HHeJ_P0061140 Insrr protein_coding protein_coding MGP_C3HHeJ_T0061141.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87288722 87297855 + Insrr protein_coding retained_intron MGP_C3HHeJ_T0061142.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87288851 87308762 + MGP_C3HHeJ_P0061142 Insrr protein_coding protein_coding MGP_C3HHeJ_T0061143.1 MGP_C3HHeJ_G0027085.1 mouse_genomes_project 3 87294712 87295578 + Insrr protein_coding processed_transcript MGP_C3HHeJ_T0004206.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88936507 88942863 + Gm15417 antisense antisense MGP_C3HHeJ_T0004207.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88936627 88942863 + Gm15417 antisense antisense MGP_C3HHeJ_T0004208.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88938867 88943413 + Gm15417 antisense antisense MGP_C3HHeJ_T0004209.1 MGP_C3HHeJ_G0003693.1 mouse_genomes_project 3 88940607 88942785 + Gm15417 antisense antisense MGP_C3HHeJ_T0001175.1 MGP_C3HHeJ_G0001107.1 mouse_genomes_project 3 51359028 51361693 + TEC TEC MGP_C3HHeJ_T0001084.1 MGP_C3HHeJ_G0001018.1 mouse_genomes_project 3 15899353 15903301 + TEC TEC MGP_C3HHeJ_T0101981.1 MGP_C3HHeJ_G0039946.1 mouse_genomes_project 3 158225533 158226404 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001173.1 MGP_C3HHeJ_G0001105.1 mouse_genomes_project 3 50512561 50514630 + TEC TEC MGP_C3HHeJ_T0101938.1 MGP_C3HHeJ_G0039903.1 mouse_genomes_project 3 11786321 11801158 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014095.1 MGP_C3HHeJ_G0012199.1 mouse_genomes_project 3 113442030 113442817 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062085.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95960444 95965867 - MGP_C3HHeJ_P0062085 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062086.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95960445 95965865 - MGP_C3HHeJ_P0062086 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062087.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95960446 95961316 - Ecm1 protein_coding retained_intron MGP_C3HHeJ_T0062088.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962434 95965847 - MGP_C3HHeJ_P0062088 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062089.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962446 95965865 - MGP_C3HHeJ_P0062089 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062090.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962507 95965867 - MGP_C3HHeJ_P0062090 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062091.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95962897 95965842 - MGP_C3HHeJ_P0062091 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062092.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95963058 95965847 - MGP_C3HHeJ_P0062092 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0062093.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95963647 95964521 - Ecm1 protein_coding retained_intron MGP_C3HHeJ_T0062094.1 MGP_C3HHeJ_G0027296.1 mouse_genomes_project 3 95964181 95965867 - MGP_C3HHeJ_P0062094 Ecm1 protein_coding protein_coding MGP_C3HHeJ_T0014107.1 MGP_C3HHeJ_G0012211.1 mouse_genomes_project 3 117198791 117199956 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100520.1 MGP_C3HHeJ_G0038714.1 mouse_genomes_project 3 5900494 5900613 - Gm23670 snoRNA snoRNA MGP_C3HHeJ_T0063196.1 MGP_C3HHeJ_G0027545.1 mouse_genomes_project 3 124513241 124515224 + MGP_C3HHeJ_P0063196 1810037I17Rik protein_coding protein_coding MGP_C3HHeJ_T0100544.1 MGP_C3HHeJ_G0038738.1 mouse_genomes_project 3 68836969 68837100 - Gm23484 snoRNA snoRNA MGP_C3HHeJ_T0061694.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89993936 89998636 - Slc27a3 protein_coding retained_intron MGP_C3HHeJ_T0061695.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89993936 89998625 - MGP_C3HHeJ_P0061695 Slc27a3 protein_coding protein_coding MGP_C3HHeJ_T0061696.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89993938 89998362 - MGP_C3HHeJ_P0061696 Slc27a3 protein_coding protein_coding MGP_C3HHeJ_T0061697.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89996132 89997679 - Slc27a3 protein_coding retained_intron MGP_C3HHeJ_T0061698.1 MGP_C3HHeJ_G0027177.1 mouse_genomes_project 3 89997060 89998328 - Slc27a3 protein_coding processed_transcript MGP_C3HHeJ_T0001229.1 MGP_C3HHeJ_G0001161.1 mouse_genomes_project 3 93285005 93286204 + TEC TEC MGP_C3HHeJ_T0013925.1 MGP_C3HHeJ_G0012029.1 mouse_genomes_project 3 61480961 61481661 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013814.1 MGP_C3HHeJ_G0011918.1 mouse_genomes_project 3 24489427 24489538 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001350.1 MGP_C3HHeJ_G0001281.1 mouse_genomes_project 3 155935642 155939018 - TEC TEC MGP_C3HHeJ_T0014216.1 MGP_C3HHeJ_G0012320.1 mouse_genomes_project 3 156804753 156805090 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014100.1 MGP_C3HHeJ_G0012204.1 mouse_genomes_project 3 114838159 114838766 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001331.1 MGP_C3HHeJ_G0001262.1 mouse_genomes_project 3 138714070 138715073 - TEC TEC MGP_C3HHeJ_T0007373.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841077 10842215 + lincRNA lincRNA MGP_C3HHeJ_T0007374.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841104 10842216 + lincRNA lincRNA MGP_C3HHeJ_T0007375.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841150 10842003 + lincRNA lincRNA MGP_C3HHeJ_T0007377.1 MGP_C3HHeJ_G0006041.1 mouse_genomes_project 3 10841328 10844019 + lincRNA lincRNA MGP_C3HHeJ_T0060984.1 MGP_C3HHeJ_G0027050.1 mouse_genomes_project 3 82325477 82335253 - MGP_C3HHeJ_P0060984 Fgb protein_coding protein_coding MGP_C3HHeJ_T0062591.1 MGP_C3HHeJ_G0027411.1 mouse_genomes_project 3 105630659 105635621 + MGP_C3HHeJ_P0062591 Ppm1j protein_coding protein_coding MGP_C3HHeJ_T0062592.1 MGP_C3HHeJ_G0027411.1 mouse_genomes_project 3 105635211 105635621 + Ppm1j protein_coding retained_intron MGP_C3HHeJ_T0098433.1 MGP_C3HHeJ_G0036638.1 mouse_genomes_project 3 104560497 104561920 - Gm43149 sense_intronic sense_intronic MGP_C3HHeJ_T0004214.1 MGP_C3HHeJ_G0003698.1 mouse_genomes_project 3 94430787 94441132 - Gm43306 antisense antisense MGP_C3HHeJ_T0011444.1 MGP_C3HHeJ_G0009577.1 mouse_genomes_project 3 71289742 71289833 + Gm27465 misc_RNA misc_RNA MGP_C3HHeJ_T0100563.1 MGP_C3HHeJ_G0038757.1 mouse_genomes_project 3 97029656 97029792 - Gm22581 snoRNA snoRNA MGP_C3HHeJ_T0001252.1 MGP_C3HHeJ_G0001184.1 mouse_genomes_project 3 109573137 109574568 + TEC TEC MGP_C3HHeJ_T0001239.1 MGP_C3HHeJ_G0001171.1 mouse_genomes_project 3 97757871 97758834 + TEC TEC MGP_C3HHeJ_T0017795.1 MGP_C3HHeJ_G0015290.1 mouse_genomes_project 3 150548229 150560144 + Gm43574 processed_transcript processed_transcript MGP_C3HHeJ_T0014124.1 MGP_C3HHeJ_G0012228.1 mouse_genomes_project 3 123695749 123696161 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001254.1 MGP_C3HHeJ_G0001186.1 mouse_genomes_project 3 111690626 111693365 + TEC TEC MGP_C3HHeJ_T0001183.1 MGP_C3HHeJ_G0001115.1 mouse_genomes_project 3 53870208 53872226 + TEC TEC MGP_C3HHeJ_T0098458.1 MGP_C3HHeJ_G0036663.1 mouse_genomes_project 3 106633626 106636949 - Gm43329 sense_intronic sense_intronic MGP_C3HHeJ_T0007371.1 MGP_C3HHeJ_G0006039.1 mouse_genomes_project 3 9176454 9198513 - Gm10745 lincRNA lincRNA MGP_C3HHeJ_T0014219.1 MGP_C3HHeJ_G0012323.1 mouse_genomes_project 3 160203888 160204658 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100585.1 MGP_C3HHeJ_G0038779.1 mouse_genomes_project 3 144910528 144910621 + Gm25965 snoRNA snoRNA MGP_C3HHeJ_T0007446.1 MGP_C3HHeJ_G0006094.1 mouse_genomes_project 3 39415173 39422276 - Gm43733 lincRNA lincRNA MGP_C3HHeJ_T0007447.1 MGP_C3HHeJ_G0006094.1 mouse_genomes_project 3 39416130 39422306 - Gm43733 lincRNA lincRNA MGP_C3HHeJ_T0007448.1 MGP_C3HHeJ_G0006094.1 mouse_genomes_project 3 39416213 39417144 - Gm43733 lincRNA lincRNA MGP_C3HHeJ_T0004136.1 MGP_C3HHeJ_G0003641.1 mouse_genomes_project 3 27584313 27621174 + Mecomos antisense antisense MGP_C3HHeJ_T0004137.1 MGP_C3HHeJ_G0003641.1 mouse_genomes_project 3 27590265 27596426 + Mecomos antisense antisense MGP_C3HHeJ_T0013943.1 MGP_C3HHeJ_G0012047.1 mouse_genomes_project 3 67203875 67204460 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061846.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94478072 94504414 + MGP_C3HHeJ_P0061846 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0061847.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94478099 94499640 + MGP_C3HHeJ_P0061847 Tdrkh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061848.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94478116 94500192 + MGP_C3HHeJ_P0061848 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0061849.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94496804 94505314 + MGP_C3HHeJ_P0061849 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0061850.1 MGP_C3HHeJ_G0027255.1 mouse_genomes_project 3 94496804 94505301 + MGP_C3HHeJ_P0061850 Tdrkh protein_coding protein_coding MGP_C3HHeJ_T0060818.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67880459 67892837 - MGP_C3HHeJ_P0060818 Trim59 protein_coding protein_coding MGP_C3HHeJ_T0060819.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67881977 67892797 - MGP_C3HHeJ_P0060819 Trim59 protein_coding protein_coding MGP_C3HHeJ_T0060820.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67891617 67892797 - Trim59 protein_coding retained_intron MGP_C3HHeJ_T0060821.1 MGP_C3HHeJ_G0027009.1 mouse_genomes_project 3 67891843 67892805 - Trim59 protein_coding processed_transcript MGP_C3HHeJ_T0059787.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16822284 16920648 + MGP_C3HHeJ_P0059787 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0059788.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16822304 16920778 + MGP_C3HHeJ_P0059788 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0059789.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16844858 16920666 + MGP_C3HHeJ_P0059789 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0059790.1 MGP_C3HHeJ_G0026806.1 mouse_genomes_project 3 16845434 16920777 + MGP_C3HHeJ_P0059790 Dnajc5b protein_coding protein_coding MGP_C3HHeJ_T0007559.1 MGP_C3HHeJ_G0006180.1 mouse_genomes_project 3 102977288 103149073 + A230001M10Rik lincRNA lincRNA MGP_C3HHeJ_T0007560.1 MGP_C3HHeJ_G0006180.1 mouse_genomes_project 3 102977405 103004669 + A230001M10Rik lincRNA lincRNA MGP_C3HHeJ_T0007561.1 MGP_C3HHeJ_G0006180.1 mouse_genomes_project 3 102977721 103003874 + A230001M10Rik lincRNA lincRNA MGP_C3HHeJ_T0062351.1 MGP_C3HHeJ_G0027360.1 mouse_genomes_project 3 99322643 99334412 - MGP_C3HHeJ_P0062351 Hsd3b6 protein_coding protein_coding MGP_C3HHeJ_T0062352.1 MGP_C3HHeJ_G0027360.1 mouse_genomes_project 3 99322644 99328214 - MGP_C3HHeJ_P0062352 Hsd3b6 protein_coding protein_coding MGP_C3HHeJ_T0062353.1 MGP_C3HHeJ_G0027360.1 mouse_genomes_project 3 99323614 99334391 - Hsd3b6 protein_coding processed_transcript MGP_C3HHeJ_T0061753.1 MGP_C3HHeJ_G0027190.1 mouse_genomes_project 3 90228164 90230429 + MGP_C3HHeJ_P0061753 S100a4 protein_coding protein_coding MGP_C3HHeJ_T0061754.1 MGP_C3HHeJ_G0027190.1 mouse_genomes_project 3 90229294 90230217 + MGP_C3HHeJ_P0061754 S100a4 protein_coding protein_coding MGP_C3HHeJ_T0062399.1 MGP_C3HHeJ_G0027373.1 mouse_genomes_project 3 101637722 101674816 - MGP_C3HHeJ_P0062399 Cd101 protein_coding protein_coding MGP_C3HHeJ_T0062400.1 MGP_C3HHeJ_G0027373.1 mouse_genomes_project 3 101637725 101666844 - MGP_C3HHeJ_P0062400 Cd101 protein_coding protein_coding MGP_C3HHeJ_T0014026.1 MGP_C3HHeJ_G0012130.1 mouse_genomes_project 3 94530175 94532595 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101957.1 MGP_C3HHeJ_G0039922.1 mouse_genomes_project 3 88019069 88019640 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004340.1 MGP_C3HHeJ_G0003780.1 mouse_genomes_project 3 160864813 160873743 - B230334C09Rik antisense antisense MGP_C3HHeJ_T0007664.1 MGP_C3HHeJ_G0006265.1 mouse_genomes_project 3 145925846 145927756 + Gm42706 lincRNA lincRNA MGP_C3HHeJ_T0061762.1 MGP_C3HHeJ_G0027194.1 mouse_genomes_project 3 90294822 90295880 + MGP_C3HHeJ_P0061762 S100a8 protein_coding protein_coding MGP_C3HHeJ_T0061763.1 MGP_C3HHeJ_G0027194.1 mouse_genomes_project 3 90295155 90295809 + S100a8 protein_coding retained_intron MGP_C3HHeJ_T0001253.1 MGP_C3HHeJ_G0001185.1 mouse_genomes_project 3 111312167 111312934 - TEC TEC MGP_C3HHeJ_T0100539.1 MGP_C3HHeJ_G0038733.1 mouse_genomes_project 3 54803253 54803384 - Gm25727 snoRNA snoRNA MGP_C3HHeJ_T0014215.1 MGP_C3HHeJ_G0012319.1 mouse_genomes_project 3 156804634 156805085 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060156.1 MGP_C3HHeJ_G0026874.1 mouse_genomes_project 3 34301319 34307688 + MGP_C3HHeJ_P0060156 1810062G17Rik protein_coding protein_coding MGP_C3HHeJ_T0063136.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123243302 123254812 + MGP_C3HHeJ_P0063136 F3 protein_coding protein_coding MGP_C3HHeJ_T0063137.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123243335 123249311 + F3 protein_coding processed_transcript MGP_C3HHeJ_T0063138.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123249098 123251945 + F3 protein_coding retained_intron MGP_C3HHeJ_T0063139.1 MGP_C3HHeJ_G0027534.1 mouse_genomes_project 3 123249322 123254812 + MGP_C3HHeJ_P0063139 F3 protein_coding protein_coding MGP_C3HHeJ_T0004300.1 MGP_C3HHeJ_G0003751.1 mouse_genomes_project 3 131517222 131521773 + Gm42650 antisense antisense MGP_C3HHeJ_T0013992.1 MGP_C3HHeJ_G0012096.1 mouse_genomes_project 3 83905131 83906122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062686.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107424449 107470861 - MGP_C3HHeJ_P0062686 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062687.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107425172 107470641 - MGP_C3HHeJ_P0062687 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062688.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107425172 107470790 - MGP_C3HHeJ_P0062688 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062689.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107427443 107470758 - MGP_C3HHeJ_P0062689 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062690.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107442500 107470802 - MGP_C3HHeJ_P0062690 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0062691.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107454298 107470777 - MGP_C3HHeJ_P0062691 Cept1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062692.1 MGP_C3HHeJ_G0027436.1 mouse_genomes_project 3 107462369 107470651 - MGP_C3HHeJ_P0062692 Cept1 protein_coding protein_coding MGP_C3HHeJ_T0014067.1 MGP_C3HHeJ_G0012171.1 mouse_genomes_project 3 104704179 104704643 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059953.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28179591 28198443 + MGP_C3HHeJ_P0059953 Mynn protein_coding protein_coding MGP_C3HHeJ_T0059954.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180157 28198443 + MGP_C3HHeJ_P0059954 Mynn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059955.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180163 28196938 + MGP_C3HHeJ_P0059955 Mynn protein_coding protein_coding MGP_C3HHeJ_T0059956.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180165 28181685 + Mynn protein_coding retained_intron MGP_C3HHeJ_T0059957.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28180170 28197071 + MGP_C3HHeJ_P0059957 Mynn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059958.1 MGP_C3HHeJ_G0026836.1 mouse_genomes_project 3 28190985 28195365 + Mynn protein_coding retained_intron MGP_C3HHeJ_T0013788.1 MGP_C3HHeJ_G0011892.1 mouse_genomes_project 3 14527402 14528741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014001.1 MGP_C3HHeJ_G0012105.1 mouse_genomes_project 3 87478453 87478874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060697.1 MGP_C3HHeJ_G0026980.1 mouse_genomes_project 3 62553578 62582804 - MGP_C3HHeJ_P0060697 Slc33a1 protein_coding protein_coding MGP_C3HHeJ_T0060698.1 MGP_C3HHeJ_G0026980.1 mouse_genomes_project 3 62560485 62582906 - MGP_C3HHeJ_P0060698 Slc33a1 protein_coding protein_coding MGP_C3HHeJ_T0060699.1 MGP_C3HHeJ_G0026980.1 mouse_genomes_project 3 62560569 62582510 - MGP_C3HHeJ_P0060699 Slc33a1 protein_coding protein_coding MGP_C3HHeJ_T0007579.1 MGP_C3HHeJ_G0006195.1 mouse_genomes_project 3 109217071 109231373 + Gm42754 lincRNA lincRNA MGP_C3HHeJ_T0063628.1 MGP_C3HHeJ_G0027621.1 mouse_genomes_project 3 140045369 140064054 - MGP_C3HHeJ_P0063628 Gm5105 protein_coding protein_coding MGP_C3HHeJ_T0013912.1 MGP_C3HHeJ_G0012016.1 mouse_genomes_project 3 57858247 57860059 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060170.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34401625 34443320 - MGP_C3HHeJ_P0060170 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0060171.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34401625 34443408 - MGP_C3HHeJ_P0060171 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0060172.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34403356 34443216 - MGP_C3HHeJ_P0060172 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0060173.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34404267 34405779 - Bbs7 protein_coding retained_intron MGP_C3HHeJ_T0060174.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34438171 34443320 - Bbs7 protein_coding retained_intron MGP_C3HHeJ_T0060175.1 MGP_C3HHeJ_G0026877.1 mouse_genomes_project 3 34438998 34443320 - MGP_C3HHeJ_P0060175 Bbs7 protein_coding protein_coding MGP_C3HHeJ_T0011440.1 MGP_C3HHeJ_G0009573.1 mouse_genomes_project 3 32382619 32382891 + Mir1897 misc_RNA misc_RNA MGP_C3HHeJ_T0013776.1 MGP_C3HHeJ_G0011880.1 mouse_genomes_project 3 11164971 11165226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100537.1 MGP_C3HHeJ_G0038731.1 mouse_genomes_project 3 51793865 51793984 + Gm23675 snoRNA snoRNA MGP_C3HHeJ_T0099295.1 MGP_C3HHeJ_G0037489.1 mouse_genomes_project 3 104911358 104911460 + Gm23830 snRNA snRNA MGP_C3HHeJ_T0013980.1 MGP_C3HHeJ_G0012084.1 mouse_genomes_project 3 77943188 77944033 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101942.1 MGP_C3HHeJ_G0039907.1 mouse_genomes_project 3 57908798 57909063 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007379.1 MGP_C3HHeJ_G0006044.1 mouse_genomes_project 3 12578065 12596939 - Gm33819 lincRNA lincRNA MGP_C3HHeJ_T0100569.1 MGP_C3HHeJ_G0038763.1 mouse_genomes_project 3 109018297 109018428 + Gm25592 snoRNA snoRNA MGP_C3HHeJ_T0001125.1 MGP_C3HHeJ_G0001059.1 mouse_genomes_project 3 35844611 35845167 + TEC TEC MGP_C3HHeJ_T0062668.1 MGP_C3HHeJ_G0027430.1 mouse_genomes_project 3 106898505 106906495 - MGP_C3HHeJ_P0062668 Chil5 protein_coding protein_coding MGP_C3HHeJ_T0062669.1 MGP_C3HHeJ_G0027430.1 mouse_genomes_project 3 106898551 106906500 - MGP_C3HHeJ_P0062669 Chil5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062670.1 MGP_C3HHeJ_G0027430.1 mouse_genomes_project 3 106898718 106915875 - MGP_C3HHeJ_P0062670 Chil5 protein_coding protein_coding MGP_C3HHeJ_T0101183.1 MGP_C3HHeJ_G0039331.1 mouse_genomes_project 3 19077495 19132768 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101184.1 MGP_C3HHeJ_G0039331.1 mouse_genomes_project 3 19077574 19087061 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101185.1 MGP_C3HHeJ_G0039331.1 mouse_genomes_project 3 19077764 19077929 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0061638.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89655233 89676227 + MGP_C3HHeJ_P0061638 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061639.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89655235 89689436 + MGP_C3HHeJ_P0061639 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061640.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662124 89689436 + MGP_C3HHeJ_P0061640 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061641.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662238 89689436 + MGP_C3HHeJ_P0061641 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061642.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662249 89673693 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061643.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662249 89671983 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061644.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662299 89682880 + MGP_C3HHeJ_P0061644 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061645.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89662316 89675192 + MGP_C3HHeJ_P0061645 Tpm3 protein_coding protein_coding MGP_C3HHeJ_T0061646.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89669306 89671653 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061647.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89671414 89673904 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061648.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89671544 89672021 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061649.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89671561 89672666 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061650.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89672166 89674139 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061651.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89673727 89674569 + Tpm3 protein_coding retained_intron MGP_C3HHeJ_T0061652.1 MGP_C3HHeJ_G0027168.1 mouse_genomes_project 3 89674155 89682880 + Tpm3 protein_coding processed_transcript MGP_C3HHeJ_T0007438.1 MGP_C3HHeJ_G0006090.1 mouse_genomes_project 3 39178781 39183308 - Gm16508 lincRNA lincRNA MGP_C3HHeJ_T0064084.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285039 157311244 + MGP_C3HHeJ_P0064084 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064085.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285039 157311242 + MGP_C3HHeJ_P0064085 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064086.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285039 157311244 + MGP_C3HHeJ_P0064086 Cryz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064087.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285472 157310229 + MGP_C3HHeJ_P0064087 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064088.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285525 157299544 + MGP_C3HHeJ_P0064088 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064089.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285550 157306672 + MGP_C3HHeJ_P0064089 Cryz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064090.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285680 157299426 + MGP_C3HHeJ_P0064090 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064091.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285730 157301838 + MGP_C3HHeJ_P0064091 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064092.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157285766 157306572 + MGP_C3HHeJ_P0064092 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064093.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157294605 157310232 + MGP_C3HHeJ_P0064093 Cryz protein_coding protein_coding MGP_C3HHeJ_T0064094.1 MGP_C3HHeJ_G0027705.1 mouse_genomes_project 3 157303871 157307433 + Cryz protein_coding retained_intron MGP_C3HHeJ_T0007516.1 MGP_C3HHeJ_G0006150.1 mouse_genomes_project 3 87730415 87735908 - AI849053 lincRNA lincRNA MGP_C3HHeJ_T0004147.1 MGP_C3HHeJ_G0003649.1 mouse_genomes_project 3 31541660 31542351 + Gm43140 antisense antisense MGP_C3HHeJ_T0063372.1 MGP_C3HHeJ_G0027572.1 mouse_genomes_project 3 131562695 131581033 - MGP_C3HHeJ_P0063372 Lrit3 protein_coding protein_coding MGP_C3HHeJ_T0063373.1 MGP_C3HHeJ_G0027572.1 mouse_genomes_project 3 131563105 131581033 - MGP_C3HHeJ_P0063373 Lrit3 protein_coding protein_coding MGP_C3HHeJ_T0063374.1 MGP_C3HHeJ_G0027572.1 mouse_genomes_project 3 131567124 131577524 - Lrit3 protein_coding retained_intron MGP_C3HHeJ_T0063250.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 126973942 127308575 + MGP_C3HHeJ_P0063250 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0063251.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 126973956 127265352 + Ndst4 protein_coding retained_intron MGP_C3HHeJ_T0063252.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127140098 127189706 + MGP_C3HHeJ_P0063252 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0063253.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127259671 127308015 + MGP_C3HHeJ_P0063253 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0063254.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127259681 127269652 + Ndst4 protein_coding processed_transcript MGP_C3HHeJ_T0063255.1 MGP_C3HHeJ_G0027556.1 mouse_genomes_project 3 127289840 127304361 + MGP_C3HHeJ_P0063255 Ndst4 protein_coding protein_coding MGP_C3HHeJ_T0064128.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160691554 160722952 - MGP_C3HHeJ_P0064128 Cth protein_coding protein_coding MGP_C3HHeJ_T0064129.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160691729 160695013 - Cth protein_coding processed_transcript MGP_C3HHeJ_T0064130.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160694602 160702987 - Cth protein_coding retained_intron MGP_C3HHeJ_T0064131.1 MGP_C3HHeJ_G0027713.1 mouse_genomes_project 3 160717088 160722926 - Cth protein_coding retained_intron MGP_C3HHeJ_T0098465.1 MGP_C3HHeJ_G0036670.1 mouse_genomes_project 3 146679724 146682911 - Gm43707 sense_intronic sense_intronic MGP_C3HHeJ_T0062817.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109176696 109182138 + MGP_C3HHeJ_P0062817 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062818.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109176711 109182139 + MGP_C3HHeJ_P0062818 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062819.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109176719 109182648 + MGP_C3HHeJ_P0062819 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062820.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109178404 109182137 + MGP_C3HHeJ_P0062820 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0062821.1 MGP_C3HHeJ_G0027470.1 mouse_genomes_project 3 109178462 109182129 + MGP_C3HHeJ_P0062821 Amigo1 protein_coding protein_coding MGP_C3HHeJ_T0010466.1 MGP_C3HHeJ_G0008599.1 mouse_genomes_project 3 129213894 129213962 + Mir302c miRNA miRNA MGP_C3HHeJ_T0059646.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2712697 2728657 - MGP_C3HHeJ_P0059646 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059647.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2712697 2728657 - MGP_C3HHeJ_P0059647 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059648.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713008 2716245 - MGP_C3HHeJ_P0059648 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059649.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713009 2728652 - MGP_C3HHeJ_P0059649 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059650.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713009 2728746 - MGP_C3HHeJ_P0059650 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0059651.1 MGP_C3HHeJ_G0026759.1 mouse_genomes_project 3 2713013 2728635 - MGP_C3HHeJ_P0059651 Pex2 protein_coding protein_coding MGP_C3HHeJ_T0001285.1 MGP_C3HHeJ_G0001217.1 mouse_genomes_project 3 128253302 128255781 + TEC TEC MGP_C3HHeJ_T0060825.1 MGP_C3HHeJ_G0027011.1 mouse_genomes_project 3 68069886 68071086 + MGP_C3HHeJ_P0060825 Arl14 protein_coding protein_coding MGP_C3HHeJ_T0101953.1 MGP_C3HHeJ_G0039918.1 mouse_genomes_project 3 80254912 80255380 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013888.1 MGP_C3HHeJ_G0011992.1 mouse_genomes_project 3 49843943 49844376 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014071.1 MGP_C3HHeJ_G0012175.1 mouse_genomes_project 3 105770867 105771122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061766.1 MGP_C3HHeJ_G0027196.1 mouse_genomes_project 3 90353355 90368790 + MGP_C3HHeJ_P0061766 Pglyrp4 protein_coding protein_coding MGP_C3HHeJ_T0061767.1 MGP_C3HHeJ_G0027196.1 mouse_genomes_project 3 90353360 90367787 + MGP_C3HHeJ_P0061767 Pglyrp4 protein_coding protein_coding MGP_C3HHeJ_T0061768.1 MGP_C3HHeJ_G0027196.1 mouse_genomes_project 3 90364599 90368788 + Pglyrp4 protein_coding processed_transcript MGP_C3HHeJ_T0063473.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134687842 134757870 - MGP_C3HHeJ_P0063473 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063474.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134687859 134757622 - MGP_C3HHeJ_P0063474 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063475.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134688780 134757739 - MGP_C3HHeJ_P0063475 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063476.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134690527 134757622 - MGP_C3HHeJ_P0063476 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063477.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134690527 134757622 - MGP_C3HHeJ_P0063477 Npnt protein_coding protein_coding MGP_C3HHeJ_T0063478.1 MGP_C3HHeJ_G0027594.1 mouse_genomes_project 3 134697273 134712447 - Npnt protein_coding retained_intron MGP_C3HHeJ_T0060591.1 MGP_C3HHeJ_G0026955.1 mouse_genomes_project 3 57108454 57125831 - MGP_C3HHeJ_P0060591 Siah2 protein_coding protein_coding MGP_C3HHeJ_T0060592.1 MGP_C3HHeJ_G0026955.1 mouse_genomes_project 3 57109692 57119559 - Siah2 protein_coding processed_transcript MGP_C3HHeJ_T0004144.1 MGP_C3HHeJ_G0003646.1 mouse_genomes_project 3 30284722 30287361 + Gm37640 antisense antisense MGP_C3HHeJ_T0014130.1 MGP_C3HHeJ_G0012234.1 mouse_genomes_project 3 124738722 124739410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063838.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148383074 148443482 - MGP_C3HHeJ_P0063838 Wdr63 protein_coding protein_coding MGP_C3HHeJ_T0063839.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148383075 148438577 - MGP_C3HHeJ_P0063839 Wdr63 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063840.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148383076 148389508 - Wdr63 protein_coding processed_transcript MGP_C3HHeJ_T0063841.1 MGP_C3HHeJ_G0027667.1 mouse_genomes_project 3 148385323 148390760 - Wdr63 protein_coding processed_transcript MGP_C3HHeJ_T0013750.1 MGP_C3HHeJ_G0011854.1 mouse_genomes_project 3 4658540 4659569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001241.1 MGP_C3HHeJ_G0001173.1 mouse_genomes_project 3 98396865 98401986 + TEC TEC MGP_C3HHeJ_T0014052.1 MGP_C3HHeJ_G0012156.1 mouse_genomes_project 3 101302525 101302816 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001198.1 MGP_C3HHeJ_G0001130.1 mouse_genomes_project 3 62067133 62067619 + TEC TEC MGP_C3HHeJ_T0001119.1 MGP_C3HHeJ_G0001053.1 mouse_genomes_project 3 35339689 35345493 + TEC TEC MGP_C3HHeJ_T0001086.1 MGP_C3HHeJ_G0001020.1 mouse_genomes_project 3 17746873 17747119 + TEC TEC MGP_C3HHeJ_T0013967.1 MGP_C3HHeJ_G0012071.1 mouse_genomes_project 3 73410982 73411448 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014190.1 MGP_C3HHeJ_G0012294.1 mouse_genomes_project 3 142928225 142928589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001201.1 MGP_C3HHeJ_G0001133.1 mouse_genomes_project 3 64684121 64685682 - TEC TEC MGP_C3HHeJ_T0101982.1 MGP_C3HHeJ_G0039947.1 mouse_genomes_project 3 159567075 159567550 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017758.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403226 107407167 - 2010016I18Rik processed_transcript antisense MGP_C3HHeJ_T0017759.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403244 107405080 - 2010016I18Rik processed_transcript antisense MGP_C3HHeJ_T0017760.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403257 107404707 - 2010016I18Rik processed_transcript retained_intron MGP_C3HHeJ_T0017761.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107403257 107404682 - 2010016I18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017762.1 MGP_C3HHeJ_G0015279.1 mouse_genomes_project 3 107405315 107407102 - 2010016I18Rik processed_transcript retained_intron MGP_C3HHeJ_T0060957.1 MGP_C3HHeJ_G0027042.1 mouse_genomes_project 3 81278562 81321052 - MGP_C3HHeJ_P0060957 Gucy1b3 protein_coding protein_coding MGP_C3HHeJ_T0060958.1 MGP_C3HHeJ_G0027042.1 mouse_genomes_project 3 81280883 81281895 - Gucy1b3 protein_coding retained_intron MGP_C3HHeJ_T0060959.1 MGP_C3HHeJ_G0027042.1 mouse_genomes_project 3 81297517 81321151 - Gucy1b3 protein_coding processed_transcript MGP_C3HHeJ_T0007542.1 MGP_C3HHeJ_G0006164.1 mouse_genomes_project 3 96622870 96636041 - Gm17575 lincRNA lincRNA MGP_C3HHeJ_T0007543.1 MGP_C3HHeJ_G0006164.1 mouse_genomes_project 3 96622871 96631409 - Gm17575 lincRNA lincRNA MGP_C3HHeJ_T0061839.1 MGP_C3HHeJ_G0027252.1 mouse_genomes_project 3 94424615 94426744 + MGP_C3HHeJ_P0061839 C2cd4d protein_coding protein_coding MGP_C3HHeJ_T0061840.1 MGP_C3HHeJ_G0027252.1 mouse_genomes_project 3 94424680 94425342 + C2cd4d protein_coding retained_intron MGP_C3HHeJ_T0061961.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95285932 95288890 + MGP_C3HHeJ_P0061961 Tmod4 protein_coding protein_coding MGP_C3HHeJ_T0061962.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95285970 95291039 + MGP_C3HHeJ_P0061962 Tmod4 protein_coding protein_coding MGP_C3HHeJ_T0061963.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95285971 95291035 + MGP_C3HHeJ_P0061963 Tmod4 protein_coding protein_coding MGP_C3HHeJ_T0061964.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95287660 95290574 + Tmod4 protein_coding retained_intron MGP_C3HHeJ_T0061965.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95288406 95289103 + Tmod4 protein_coding processed_transcript MGP_C3HHeJ_T0061966.1 MGP_C3HHeJ_G0027272.1 mouse_genomes_project 3 95288889 95291038 + Tmod4 protein_coding retained_intron MGP_C3HHeJ_T0013794.1 MGP_C3HHeJ_G0011898.1 mouse_genomes_project 3 15837512 15838712 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062610.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105714286 105716741 + St7l protein_coding retained_intron MGP_C3HHeJ_T0062611.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105714784 105781782 + MGP_C3HHeJ_P0062611 St7l protein_coding protein_coding MGP_C3HHeJ_T0062612.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105714784 105784947 + MGP_C3HHeJ_P0062612 St7l protein_coding protein_coding MGP_C3HHeJ_T0062613.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715348 105782666 + MGP_C3HHeJ_P0062613 St7l protein_coding protein_coding MGP_C3HHeJ_T0062614.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715352 105782790 + MGP_C3HHeJ_P0062614 St7l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062615.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715361 105742933 + MGP_C3HHeJ_P0062615 St7l protein_coding protein_coding MGP_C3HHeJ_T0062616.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105715394 105742865 + St7l protein_coding processed_transcript MGP_C3HHeJ_T0062617.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105722696 105774467 + MGP_C3HHeJ_P0062617 St7l protein_coding protein_coding MGP_C3HHeJ_T0062618.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105722719 105735746 + St7l protein_coding processed_transcript MGP_C3HHeJ_T0062619.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105735649 105774455 + MGP_C3HHeJ_P0062619 St7l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062620.1 MGP_C3HHeJ_G0027415.1 mouse_genomes_project 3 105742450 105748548 + St7l protein_coding retained_intron MGP_C3HHeJ_T0063166.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123794792 123805736 + Gclm protein_coding processed_transcript MGP_C3HHeJ_T0063167.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123795066 123817867 + MGP_C3HHeJ_P0063167 Gclm protein_coding protein_coding MGP_C3HHeJ_T0063168.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123795068 123814086 + MGP_C3HHeJ_P0063168 Gclm protein_coding protein_coding MGP_C3HHeJ_T0063169.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123795161 123816695 + MGP_C3HHeJ_P0063169 Gclm protein_coding protein_coding MGP_C3HHeJ_T0063170.1 MGP_C3HHeJ_G0027538.1 mouse_genomes_project 3 123813248 123817725 + Gclm protein_coding retained_intron MGP_C3HHeJ_T0059710.1 MGP_C3HHeJ_G0026780.1 mouse_genomes_project 3 7669889 7673812 - MGP_C3HHeJ_P0059710 Slc10a5 protein_coding protein_coding MGP_C3HHeJ_T0001216.1 MGP_C3HHeJ_G0001148.1 mouse_genomes_project 3 77623901 77625541 - TEC TEC MGP_C3HHeJ_T0014120.1 MGP_C3HHeJ_G0012224.1 mouse_genomes_project 3 122781459 122782231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007462.1 MGP_C3HHeJ_G0006106.1 mouse_genomes_project 3 51185974 51198690 - lincRNA lincRNA MGP_C3HHeJ_T0061775.1 MGP_C3HHeJ_G0027203.1 mouse_genomes_project 3 92164434 92165900 + MGP_C3HHeJ_P0061775 Sprr2b protein_coding protein_coding MGP_C3HHeJ_T0013969.1 MGP_C3HHeJ_G0012073.1 mouse_genomes_project 3 74504798 74506100 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059882.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24902525 25210845 - MGP_C3HHeJ_P0059882 Fndc3b protein_coding protein_coding MGP_C3HHeJ_T0059883.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24902525 25210886 - MGP_C3HHeJ_P0059883 Fndc3b protein_coding protein_coding MGP_C3HHeJ_T0059884.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24982131 25211754 - Fndc3b protein_coding retained_intron MGP_C3HHeJ_T0059885.1 MGP_C3HHeJ_G0026825.1 mouse_genomes_project 3 24989144 25211686 - MGP_C3HHeJ_P0059885 Fndc3b protein_coding protein_coding MGP_C3HHeJ_T0001298.1 MGP_C3HHeJ_G0001230.1 mouse_genomes_project 3 128885514 128888714 - TEC TEC MGP_C3HHeJ_T0014177.1 MGP_C3HHeJ_G0012281.1 mouse_genomes_project 3 140503728 140503954 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101411.1 MGP_C3HHeJ_G0039446.1 mouse_genomes_project 3 58229258 58296758 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101412.1 MGP_C3HHeJ_G0039446.1 mouse_genomes_project 3 58277408 58304384 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0063992.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154872610 154927954 - MGP_C3HHeJ_P0063992 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063993.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154874692 154927952 - MGP_C3HHeJ_P0063993 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063994.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154881235 154927930 - MGP_C3HHeJ_P0063994 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063995.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154881402 154885212 - Fam73a protein_coding retained_intron MGP_C3HHeJ_T0063996.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154890163 154915679 - MGP_C3HHeJ_P0063996 Fam73a protein_coding protein_coding MGP_C3HHeJ_T0063997.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154890337 154897396 - Fam73a protein_coding retained_intron MGP_C3HHeJ_T0063998.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154896938 154925547 - MGP_C3HHeJ_P0063998 Fam73a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063999.1 MGP_C3HHeJ_G0027691.1 mouse_genomes_project 3 154925093 154927931 - Fam73a protein_coding retained_intron MGP_C3HHeJ_T0004314.1 MGP_C3HHeJ_G0003761.1 mouse_genomes_project 3 140100528 140111447 + Gm43691 antisense antisense MGP_C3HHeJ_T0001242.1 MGP_C3HHeJ_G0001174.1 mouse_genomes_project 3 98487561 98490624 + TEC TEC MGP_C3HHeJ_T0101976.1 MGP_C3HHeJ_G0039941.1 mouse_genomes_project 3 109011555 109014774 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014129.1 MGP_C3HHeJ_G0012233.1 mouse_genomes_project 3 124635675 124636099 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100556.1 MGP_C3HHeJ_G0038750.1 mouse_genomes_project 3 87061405 87061525 - Gm25167 snoRNA snoRNA MGP_C3HHeJ_T0062354.1 MGP_C3HHeJ_G0027361.1 mouse_genomes_project 3 99395545 99407174 - MGP_C3HHeJ_P0062354 Hsd3b1 protein_coding protein_coding MGP_C3HHeJ_T0062355.1 MGP_C3HHeJ_G0027361.1 mouse_genomes_project 3 99395547 99407174 - MGP_C3HHeJ_P0062355 Hsd3b1 protein_coding protein_coding MGP_C3HHeJ_T0064024.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318295 155412684 + MGP_C3HHeJ_P0064024 Pigk protein_coding protein_coding MGP_C3HHeJ_T0064025.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318301 155359119 + Pigk protein_coding retained_intron MGP_C3HHeJ_T0064026.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318308 155461051 + MGP_C3HHeJ_P0064026 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064027.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318308 155408726 + MGP_C3HHeJ_P0064027 Pigk protein_coding protein_coding MGP_C3HHeJ_T0064028.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318315 155601083 + MGP_C3HHeJ_P0064028 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064029.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155318318 155408457 + MGP_C3HHeJ_P0064029 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064030.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155356001 155358155 + Pigk protein_coding processed_transcript MGP_C3HHeJ_T0064031.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155356220 155408652 + MGP_C3HHeJ_P0064031 Pigk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064032.1 MGP_C3HHeJ_G0027695.1 mouse_genomes_project 3 155384872 155388053 + Pigk protein_coding processed_transcript MGP_C3HHeJ_T0010455.1 MGP_C3HHeJ_G0008588.1 mouse_genomes_project 3 99757532 99757642 - Mir6481 miRNA miRNA MGP_C3HHeJ_T0017726.1 MGP_C3HHeJ_G0015263.1 mouse_genomes_project 3 35160267 35249467 + Gm43439 processed_transcript processed_transcript MGP_C3HHeJ_T0013833.1 MGP_C3HHeJ_G0011937.1 mouse_genomes_project 3 33774960 33775281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001143.1 MGP_C3HHeJ_G0001077.1 mouse_genomes_project 3 48609320 48613322 - TEC TEC MGP_C3HHeJ_T0013825.1 MGP_C3HHeJ_G0011929.1 mouse_genomes_project 3 30899549 30899781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014132.1 MGP_C3HHeJ_G0012236.1 mouse_genomes_project 3 125353588 125354189 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060130.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33760489 33802113 - MGP_C3HHeJ_P0060130 Mccc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060131.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33761013 33802182 - MGP_C3HHeJ_P0060131 Mccc1 protein_coding protein_coding MGP_C3HHeJ_T0060132.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33761019 33762290 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060133.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33762907 33770295 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060134.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33774569 33796858 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060135.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33776382 33777684 - Mccc1 protein_coding retained_intron MGP_C3HHeJ_T0060136.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33776893 33790911 - MGP_C3HHeJ_P0060136 Mccc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060137.1 MGP_C3HHeJ_G0026868.1 mouse_genomes_project 3 33786067 33802145 - MGP_C3HHeJ_P0060137 Mccc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014085.1 MGP_C3HHeJ_G0012189.1 mouse_genomes_project 3 109623273 109623698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007412.1 MGP_C3HHeJ_G0006069.1 mouse_genomes_project 3 32221995 32222775 - Gm29135 lincRNA lincRNA MGP_C3HHeJ_T0063704.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144324031 144481331 - MGP_C3HHeJ_P0063704 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063705.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144481216 - MGP_C3HHeJ_P0063705 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063706.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144477381 - MGP_C3HHeJ_P0063706 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063707.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144477381 - MGP_C3HHeJ_P0063707 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063708.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144327115 144477381 - MGP_C3HHeJ_P0063708 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063709.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144328898 144330986 - Pdlim5 protein_coding retained_intron MGP_C3HHeJ_T0063710.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144333804 144389999 - MGP_C3HHeJ_P0063710 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063711.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144333863 144390462 - MGP_C3HHeJ_P0063711 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063712.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144388084 144477423 - MGP_C3HHeJ_P0063712 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063713.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144388319 144481245 - MGP_C3HHeJ_P0063713 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063714.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144388324 144477423 - MGP_C3HHeJ_P0063714 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063715.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144389240 144481256 - MGP_C3HHeJ_P0063715 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0063716.1 MGP_C3HHeJ_G0027639.1 mouse_genomes_project 3 144389347 144481334 - MGP_C3HHeJ_P0063716 Pdlim5 protein_coding protein_coding MGP_C3HHeJ_T0001223.1 MGP_C3HHeJ_G0001155.1 mouse_genomes_project 3 87551017 87553285 + TEC TEC MGP_C3HHeJ_T0013884.1 MGP_C3HHeJ_G0011988.1 mouse_genomes_project 3 48806458 48806834 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013775.1 MGP_C3HHeJ_G0011879.1 mouse_genomes_project 3 11136008 11136567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001107.1 MGP_C3HHeJ_G0001041.1 mouse_genomes_project 3 31679236 31680184 + TEC TEC MGP_C3HHeJ_T0010457.1 MGP_C3HHeJ_G0008590.1 mouse_genomes_project 3 109584973 109585047 - Gm22860 miRNA miRNA MGP_C3HHeJ_T0099238.1 MGP_C3HHeJ_G0037432.1 mouse_genomes_project 3 15461817 15461981 - Gm23686 snRNA snRNA MGP_C3HHeJ_T0001079.1 MGP_C3HHeJ_G0001013.1 mouse_genomes_project 3 7642724 7643054 + TEC TEC MGP_C3HHeJ_T0001159.1 MGP_C3HHeJ_G0001093.1 mouse_genomes_project 3 49906793 49908161 + TEC TEC MGP_C3HHeJ_T0001160.1 MGP_C3HHeJ_G0001093.1 mouse_genomes_project 3 49906848 49908161 + TEC TEC MGP_C3HHeJ_T0063323.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129348451 129452485 - MGP_C3HHeJ_P0063323 Alpk1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063324.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129349939 129452708 - MGP_C3HHeJ_P0063324 Alpk1 protein_coding protein_coding MGP_C3HHeJ_T0063325.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129349939 129410818 - MGP_C3HHeJ_P0063325 Alpk1 protein_coding protein_coding MGP_C3HHeJ_T0063326.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129350028 129452708 - Alpk1 protein_coding retained_intron MGP_C3HHeJ_T0063327.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129358925 129365716 - MGP_C3HHeJ_P0063327 Alpk1 protein_coding protein_coding MGP_C3HHeJ_T0063328.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129405593 129452694 - Alpk1 protein_coding retained_intron MGP_C3HHeJ_T0063329.1 MGP_C3HHeJ_G0027564.1 mouse_genomes_project 3 129434354 129452671 - Alpk1 protein_coding processed_transcript MGP_C3HHeJ_T0004217.1 MGP_C3HHeJ_G0003701.1 mouse_genomes_project 3 95140350 95142937 - A730011C13Rik antisense antisense MGP_C3HHeJ_T0004218.1 MGP_C3HHeJ_G0003701.1 mouse_genomes_project 3 95140983 95143291 - A730011C13Rik antisense antisense MGP_C3HHeJ_T0013749.1 MGP_C3HHeJ_G0011853.1 mouse_genomes_project 3 4618193 4618313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001129.1 MGP_C3HHeJ_G0001063.1 mouse_genomes_project 3 38893838 38897498 + TEC TEC MGP_C3HHeJ_T0013838.1 MGP_C3HHeJ_G0011942.1 mouse_genomes_project 3 34527330 34527582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098460.1 MGP_C3HHeJ_G0036665.1 mouse_genomes_project 3 106654338 106656027 - Gm43331 sense_intronic sense_intronic MGP_C3HHeJ_T0060622.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57760117 57787332 - MGP_C3HHeJ_P0060622 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0060623.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57761308 57787235 - MGP_C3HHeJ_P0060623 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0060624.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57761308 57787470 - MGP_C3HHeJ_P0060624 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0060625.1 MGP_C3HHeJ_G0026963.1 mouse_genomes_project 3 57782846 57787332 - MGP_C3HHeJ_P0060625 Igsf10 protein_coding protein_coding MGP_C3HHeJ_T0013906.1 MGP_C3HHeJ_G0012010.1 mouse_genomes_project 3 56201110 56201606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007681.1 MGP_C3HHeJ_G0006279.1 mouse_genomes_project 3 151730391 151894348 - Gm30382 lincRNA lincRNA MGP_C3HHeJ_T0007682.1 MGP_C3HHeJ_G0006279.1 mouse_genomes_project 3 151730849 151770794 - Gm30382 lincRNA lincRNA MGP_C3HHeJ_T0007684.1 MGP_C3HHeJ_G0006279.1 mouse_genomes_project 3 151760061 151894373 - Gm30382 lincRNA lincRNA MGP_C3HHeJ_T0060027.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30199636 30248450 + MGP_C3HHeJ_P0060027 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060028.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30199702 30217202 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060029.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30199710 30216915 + MGP_C3HHeJ_P0060029 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060030.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30201700 30214353 + MGP_C3HHeJ_P0060030 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060031.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30201709 30246568 + MGP_C3HHeJ_P0060031 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060032.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30216750 30232404 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060033.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30223389 30232673 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060034.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30230816 30239658 + MGP_C3HHeJ_P0060034 Mfn1 protein_coding protein_coding MGP_C3HHeJ_T0060035.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30232177 30233071 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0060036.1 MGP_C3HHeJ_G0026854.1 mouse_genomes_project 3 30243509 30246372 + Mfn1 protein_coding retained_intron MGP_C3HHeJ_T0062771.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869070 108871936 + MGP_C3HHeJ_P0062771 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0062772.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869085 108871825 + MGP_C3HHeJ_P0062772 Gstm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062773.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869095 108871936 + MGP_C3HHeJ_P0062773 Gstm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062774.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869190 108871595 + MGP_C3HHeJ_P0062774 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0062775.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869203 108871799 + MGP_C3HHeJ_P0062775 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0062776.1 MGP_C3HHeJ_G0027459.1 mouse_genomes_project 3 108869496 108871928 + MGP_C3HHeJ_P0062776 Gstm5 protein_coding protein_coding MGP_C3HHeJ_T0060009.1 MGP_C3HHeJ_G0026849.1 mouse_genomes_project 3 29549226 29854435 + MGP_C3HHeJ_P0060009 Kcnmb2 protein_coding protein_coding MGP_C3HHeJ_T0060010.1 MGP_C3HHeJ_G0026849.1 mouse_genomes_project 3 29817106 29853030 + MGP_C3HHeJ_P0060010 Kcnmb2 protein_coding protein_coding MGP_C3HHeJ_T0061770.1 MGP_C3HHeJ_G0027198.1 mouse_genomes_project 3 90734843 90737705 - MGP_C3HHeJ_P0061770 9130204L05Rik protein_coding protein_coding MGP_C3HHeJ_T0004154.1 MGP_C3HHeJ_G0003652.1 mouse_genomes_project 3 34016520 34018855 + Gm43255 antisense antisense MGP_C3HHeJ_T0063825.1 MGP_C3HHeJ_G0027664.1 mouse_genomes_project 3 148252742 148255110 + Bcl10 protein_coding retained_intron MGP_C3HHeJ_T0063826.1 MGP_C3HHeJ_G0027664.1 mouse_genomes_project 3 148254200 148265437 + MGP_C3HHeJ_P0063826 Bcl10 protein_coding protein_coding MGP_C3HHeJ_T0063827.1 MGP_C3HHeJ_G0027664.1 mouse_genomes_project 3 148254295 148257870 + Bcl10 protein_coding processed_transcript MGP_C3HHeJ_T0001303.1 MGP_C3HHeJ_G0001235.1 mouse_genomes_project 3 129507200 129510609 - TEC TEC MGP_C3HHeJ_T0061788.1 MGP_C3HHeJ_G0027215.1 mouse_genomes_project 3 92359557 92359788 - MGP_C3HHeJ_P0061788 Sprr4 protein_coding protein_coding MGP_C3HHeJ_T0061524.1 MGP_C3HHeJ_G0027151.1 mouse_genomes_project 3 88947027 88948833 - MGP_C3HHeJ_P0061524 Lenep protein_coding protein_coding MGP_C3HHeJ_T0010421.1 MGP_C3HHeJ_G0008554.1 mouse_genomes_project 3 28625166 28625229 + Mir7008 miRNA miRNA MGP_C3HHeJ_T0007372.1 MGP_C3HHeJ_G0006040.1 mouse_genomes_project 3 10839871 10841252 - Gm2464 lincRNA lincRNA MGP_C3HHeJ_T0001238.1 MGP_C3HHeJ_G0001170.1 mouse_genomes_project 3 97613437 97614626 - TEC TEC MGP_C3HHeJ_T0059834.1 MGP_C3HHeJ_G0026815.1 mouse_genomes_project 3 17588328 17591025 - Cpb1 protein_coding retained_intron MGP_C3HHeJ_T0059835.1 MGP_C3HHeJ_G0026815.1 mouse_genomes_project 3 17588353 17615281 - MGP_C3HHeJ_P0059835 Cpb1 protein_coding protein_coding MGP_C3HHeJ_T0059836.1 MGP_C3HHeJ_G0026815.1 mouse_genomes_project 3 17603737 17605992 - Cpb1 protein_coding processed_transcript MGP_C3HHeJ_T0060830.1 MGP_C3HHeJ_G0027013.1 mouse_genomes_project 3 68442962 68471516 - MGP_C3HHeJ_P0060830 B3galnt1 protein_coding protein_coding MGP_C3HHeJ_T0001150.1 MGP_C3HHeJ_G0001084.1 mouse_genomes_project 3 49414707 49417041 + TEC TEC MGP_C3HHeJ_T0061956.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95272012 95284509 + MGP_C3HHeJ_P0061956 Vps72 protein_coding protein_coding MGP_C3HHeJ_T0061957.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95272032 95279733 + Vps72 protein_coding processed_transcript MGP_C3HHeJ_T0061958.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95272063 95284179 + Vps72 protein_coding processed_transcript MGP_C3HHeJ_T0061959.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95276264 95280545 + Vps72 protein_coding processed_transcript MGP_C3HHeJ_T0061960.1 MGP_C3HHeJ_G0027271.1 mouse_genomes_project 3 95278126 95280664 + Vps72 protein_coding retained_intron MGP_C3HHeJ_T0007669.1 MGP_C3HHeJ_G0006269.1 mouse_genomes_project 3 146456029 146457125 + Gm43446 lincRNA lincRNA MGP_C3HHeJ_T0010422.1 MGP_C3HHeJ_G0008555.1 mouse_genomes_project 3 30958535 30958640 - Gm27974 miRNA miRNA MGP_C3HHeJ_T0101979.1 MGP_C3HHeJ_G0039944.1 mouse_genomes_project 3 123666007 123780061 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001080.1 MGP_C3HHeJ_G0001014.1 mouse_genomes_project 3 7998280 8000067 + TEC TEC MGP_C3HHeJ_T0001321.1 MGP_C3HHeJ_G0001252.1 mouse_genomes_project 3 134611994 134615209 + TEC TEC MGP_C3HHeJ_T0007552.1 MGP_C3HHeJ_G0006173.1 mouse_genomes_project 3 99606683 99610606 + Gm12440 lincRNA lincRNA MGP_C3HHeJ_T0098468.1 MGP_C3HHeJ_G0036673.1 mouse_genomes_project 3 156099247 156110242 - 1700015C17Rik sense_intronic sense_intronic MGP_C3HHeJ_T0059743.1 MGP_C3HHeJ_G0026790.1 mouse_genomes_project 3 12174854 12187641 - MGP_C3HHeJ_P0059743 Car1 protein_coding protein_coding MGP_C3HHeJ_T0059744.1 MGP_C3HHeJ_G0026790.1 mouse_genomes_project 3 12174854 12225261 - MGP_C3HHeJ_P0059744 Car1 protein_coding protein_coding MGP_C3HHeJ_T0059745.1 MGP_C3HHeJ_G0026790.1 mouse_genomes_project 3 12179003 12225264 - MGP_C3HHeJ_P0059745 Car1 protein_coding protein_coding MGP_C3HHeJ_T0100526.1 MGP_C3HHeJ_G0038720.1 mouse_genomes_project 3 25389477 25389638 + Gm26040 snoRNA snoRNA MGP_C3HHeJ_T0062640.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738089 106739819 + Tmigd3 protein_coding processed_transcript MGP_C3HHeJ_T0062641.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738093 106794888 + MGP_C3HHeJ_P0062641 Tmigd3 protein_coding protein_coding MGP_C3HHeJ_T0062642.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738093 106794807 + MGP_C3HHeJ_P0062642 Tmigd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062643.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106738163 106739049 + Tmigd3 protein_coding processed_transcript MGP_C3HHeJ_T0062645.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106771604 106787857 + MGP_C3HHeJ_P0062645 Tmigd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062647.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106783460 106794891 + MGP_C3HHeJ_P0062647 Tmigd3 protein_coding protein_coding MGP_C3HHeJ_T0062648.1 MGP_C3HHeJ_G0027424.1 mouse_genomes_project 3 106783460 106794894 + MGP_C3HHeJ_P0062648 Tmigd3 protein_coding protein_coding MGP_C3HHeJ_T0013996.1 MGP_C3HHeJ_G0012100.1 mouse_genomes_project 3 85677316 85678299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004246.1 MGP_C3HHeJ_G0003719.1 mouse_genomes_project 3 103506518 103507932 - Gm42681 antisense antisense MGP_C3HHeJ_T0014039.1 MGP_C3HHeJ_G0012143.1 mouse_genomes_project 3 96964831 96965311 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062717.1 MGP_C3HHeJ_G0027442.1 mouse_genomes_project 3 108044547 108050964 + MGP_C3HHeJ_P0062717 Kcna2 protein_coding protein_coding MGP_C3HHeJ_T0062718.1 MGP_C3HHeJ_G0027442.1 mouse_genomes_project 3 108044968 108058329 + MGP_C3HHeJ_P0062718 Kcna2 protein_coding protein_coding MGP_C3HHeJ_T0062719.1 MGP_C3HHeJ_G0027442.1 mouse_genomes_project 3 108046083 108049373 + MGP_C3HHeJ_P0062719 Kcna2 protein_coding protein_coding MGP_C3HHeJ_T0062210.1 MGP_C3HHeJ_G0027324.1 mouse_genomes_project 3 96862479 96866167 + MGP_C3HHeJ_P0062210 Gm16253 protein_coding protein_coding MGP_C3HHeJ_T0013972.1 MGP_C3HHeJ_G0012076.1 mouse_genomes_project 3 76064932 76065762 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062924.1 MGP_C3HHeJ_G0027492.1 mouse_genomes_project 3 109975826 109976219 - MGP_C3HHeJ_P0062924 Gm9857 protein_coding protein_coding MGP_C3HHeJ_T0013746.1 MGP_C3HHeJ_G0011850.1 mouse_genomes_project 3 3633943 3634925 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098429.1 MGP_C3HHeJ_G0036634.1 mouse_genomes_project 3 103195986 103198892 + Gm42679 sense_intronic sense_intronic MGP_C3HHeJ_T0007588.1 MGP_C3HHeJ_G0006203.1 mouse_genomes_project 3 117958564 117958988 + 4930512P04Rik lincRNA lincRNA MGP_C3HHeJ_T0100534.1 MGP_C3HHeJ_G0038728.1 mouse_genomes_project 3 45273911 45274049 + Gm23891 snoRNA snoRNA MGP_C3HHeJ_T0062334.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98689315 98723661 - MGP_C3HHeJ_P0062334 protein_coding protein_coding MGP_C3HHeJ_T0062335.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98696547 98717248 - protein_coding retained_intron MGP_C3HHeJ_T0062336.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98697082 98705210 - protein_coding retained_intron MGP_C3HHeJ_T0062337.1 MGP_C3HHeJ_G0027355.1 mouse_genomes_project 3 98697189 98721219 - MGP_C3HHeJ_P0062337 protein_coding protein_coding MGP_C3HHeJ_T0013740.1 MGP_C3HHeJ_G0011844.1 mouse_genomes_project 3 1042026 1042345 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060006.1 MGP_C3HHeJ_G0026847.1 mouse_genomes_project 3 28812446 28920346 - MGP_C3HHeJ_P0060006 Slc7a14 protein_coding protein_coding MGP_C3HHeJ_T0060007.1 MGP_C3HHeJ_G0026847.1 mouse_genomes_project 3 28832279 28868234 - MGP_C3HHeJ_P0060007 Slc7a14 protein_coding protein_coding MGP_C3HHeJ_T0098454.1 MGP_C3HHeJ_G0036659.1 mouse_genomes_project 3 105685646 105687410 - Gm42659 sense_intronic sense_intronic MGP_C3HHeJ_T0099304.1 MGP_C3HHeJ_G0037498.1 mouse_genomes_project 3 124990610 124990740 - Gm22713 snRNA snRNA MGP_C3HHeJ_T0099259.1 MGP_C3HHeJ_G0037453.1 mouse_genomes_project 3 62378616 62378714 + Gm23500 snRNA snRNA MGP_C3HHeJ_T0063779.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147034450 147101765 - MGP_C3HHeJ_P0063779 protein_coding protein_coding MGP_C3HHeJ_T0063781.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147040050 147043529 - MGP_C3HHeJ_P0063781 protein_coding protein_coding MGP_C3HHeJ_T0063782.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147040277 147062053 - MGP_C3HHeJ_P0063782 protein_coding protein_coding MGP_C3HHeJ_T0063783.1 MGP_C3HHeJ_G0027653.1 mouse_genomes_project 3 147070006 147071672 - protein_coding retained_intron MGP_C3HHeJ_T0063102.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647101 122663578 - MGP_C3HHeJ_P0063102 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063103.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647103 122648524 - Rwdd3 protein_coding retained_intron MGP_C3HHeJ_T0063104.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647546 122650570 - MGP_C3HHeJ_P0063104 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063105.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647549 122663571 - MGP_C3HHeJ_P0063105 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063106.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647568 122663577 - MGP_C3HHeJ_P0063106 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063107.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647642 122663577 - MGP_C3HHeJ_P0063107 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063108.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122647981 122663578 - MGP_C3HHeJ_P0063108 Rwdd3 protein_coding protein_coding MGP_C3HHeJ_T0063109.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122649722 122663578 - Rwdd3 protein_coding retained_intron MGP_C3HHeJ_T0063110.1 MGP_C3HHeJ_G0027528.1 mouse_genomes_project 3 122661052 122663577 - Rwdd3 protein_coding retained_intron MGP_C3HHeJ_T0062460.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103725681 103738374 + MGP_C3HHeJ_P0062460 Sike1 protein_coding protein_coding MGP_C3HHeJ_T0062461.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103725703 103729225 + Sike1 protein_coding retained_intron MGP_C3HHeJ_T0062462.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103725768 103732109 + MGP_C3HHeJ_P0062462 Sike1 protein_coding protein_coding MGP_C3HHeJ_T0062463.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103726022 103727325 + Sike1 protein_coding retained_intron MGP_C3HHeJ_T0062464.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103726149 103731751 + MGP_C3HHeJ_P0062464 Sike1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062465.1 MGP_C3HHeJ_G0027388.1 mouse_genomes_project 3 103726701 103729212 + Sike1 protein_coding retained_intron MGP_C3HHeJ_T0060447.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52464987 52490823 + Trpc4 protein_coding processed_transcript MGP_C3HHeJ_T0060448.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465018 52587406 + Trpc4 protein_coding retained_intron MGP_C3HHeJ_T0060449.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465056 52637754 + MGP_C3HHeJ_P0060449 Trpc4 protein_coding protein_coding MGP_C3HHeJ_T0060450.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465325 52543808 + Trpc4 protein_coding retained_intron MGP_C3HHeJ_T0060451.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465527 52637442 + MGP_C3HHeJ_P0060451 Trpc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060452.1 MGP_C3HHeJ_G0026926.1 mouse_genomes_project 3 52465567 52637702 + MGP_C3HHeJ_P0060452 Trpc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061800.1 MGP_C3HHeJ_G0027225.1 mouse_genomes_project 3 92550182 92551894 - MGP_C3HHeJ_P0061800 Lce1d protein_coding protein_coding MGP_C3HHeJ_T0061171.1 MGP_C3HHeJ_G0027091.1 mouse_genomes_project 3 87436587 87447615 + MGP_C3HHeJ_P0061171 Isg20l2 protein_coding protein_coding MGP_C3HHeJ_T0001260.1 MGP_C3HHeJ_G0001192.1 mouse_genomes_project 3 119944954 119947674 + TEC TEC MGP_C3HHeJ_T0061286.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88088791 88095271 - MGP_C3HHeJ_P0061286 Rab25 protein_coding protein_coding MGP_C3HHeJ_T0061287.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88089071 88095220 - MGP_C3HHeJ_P0061287 Rab25 protein_coding protein_coding MGP_C3HHeJ_T0061288.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88089438 88090277 - Rab25 protein_coding retained_intron MGP_C3HHeJ_T0061289.1 MGP_C3HHeJ_G0027115.1 mouse_genomes_project 3 88091404 88095253 - Rab25 protein_coding retained_intron MGP_C3HHeJ_T0010417.1 MGP_C3HHeJ_G0008550.1 mouse_genomes_project 3 25076505 25076601 - Mir3092 miRNA miRNA MGP_C3HHeJ_T0061573.1 MGP_C3HHeJ_G0027162.1 mouse_genomes_project 3 89395516 89422741 + MGP_C3HHeJ_P0061573 She protein_coding protein_coding MGP_C3HHeJ_T0061574.1 MGP_C3HHeJ_G0027162.1 mouse_genomes_project 3 89401793 89403284 + She protein_coding retained_intron MGP_C3HHeJ_T0098431.1 MGP_C3HHeJ_G0036636.1 mouse_genomes_project 3 104103119 104105360 + Gm43061 sense_intronic sense_intronic MGP_C3HHeJ_T0060359.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48085361 48653906 - MGP_C3HHeJ_P0060359 Slc7a11 protein_coding protein_coding MGP_C3HHeJ_T0060360.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48574400 48653903 - MGP_C3HHeJ_P0060360 Slc7a11 protein_coding protein_coding MGP_C3HHeJ_T0060361.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48579311 48580262 - Slc7a11 protein_coding processed_transcript MGP_C3HHeJ_T0060362.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48626266 48653906 - Slc7a11 protein_coding retained_intron MGP_C3HHeJ_T0060363.1 MGP_C3HHeJ_G0026907.1 mouse_genomes_project 3 48651221 48653897 - Slc7a11 protein_coding retained_intron MGP_C3HHeJ_T0100586.1 MGP_C3HHeJ_G0038780.1 mouse_genomes_project 3 145826715 145826840 + Gm24728 snoRNA snoRNA MGP_C3HHeJ_T0062934.1 MGP_C3HHeJ_G0027495.1 mouse_genomes_project 3 110170374 110217749 + MGP_C3HHeJ_P0062934 Slc25a24 protein_coding protein_coding MGP_C3HHeJ_T0062935.1 MGP_C3HHeJ_G0027495.1 mouse_genomes_project 3 110170387 110207824 + MGP_C3HHeJ_P0062935 Slc25a24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063785.1 MGP_C3HHeJ_G0027655.1 mouse_genomes_project 3 147119465 147246599 - MGP_C3HHeJ_P0063785 Clca4a protein_coding protein_coding MGP_C3HHeJ_T0063453.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330358 133418134 + MGP_C3HHeJ_P0063453 Papss1 protein_coding protein_coding MGP_C3HHeJ_T0063454.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330455 133418133 + MGP_C3HHeJ_P0063454 Papss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063455.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330486 133418133 + MGP_C3HHeJ_P0063455 Papss1 protein_coding protein_coding MGP_C3HHeJ_T0063456.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330489 133418134 + MGP_C3HHeJ_P0063456 Papss1 protein_coding protein_coding MGP_C3HHeJ_T0063457.1 MGP_C3HHeJ_G0027589.1 mouse_genomes_project 3 133330525 133349919 + MGP_C3HHeJ_P0063457 Papss1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001189.1 MGP_C3HHeJ_G0001121.1 mouse_genomes_project 3 56009843 56013798 - TEC TEC MGP_C3HHeJ_T0101966.1 MGP_C3HHeJ_G0039931.1 mouse_genomes_project 3 94342377 94342570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100592.1 MGP_C3HHeJ_G0038786.1 mouse_genomes_project 3 156567789 156567860 - Snord45b snoRNA snoRNA MGP_C3HHeJ_T0007589.1 MGP_C3HHeJ_G0006204.1 mouse_genomes_project 3 118405309 118421898 - 1700061I17Rik lincRNA lincRNA MGP_C3HHeJ_T0004236.1 MGP_C3HHeJ_G0003712.1 mouse_genomes_project 3 97308587 97310637 - 9230114J08Rik antisense antisense MGP_C3HHeJ_T0001274.1 MGP_C3HHeJ_G0001206.1 mouse_genomes_project 3 124140543 124143092 - TEC TEC MGP_C3HHeJ_T0001335.1 MGP_C3HHeJ_G0001266.1 mouse_genomes_project 3 145795968 145802014 + TEC TEC MGP_C3HHeJ_T0004244.1 MGP_C3HHeJ_G0003717.1 mouse_genomes_project 3 102910680 102912868 + Gm16160 antisense antisense MGP_C3HHeJ_T0059682.1 MGP_C3HHeJ_G0026769.1 mouse_genomes_project 3 6534589 6568524 + MGP_C3HHeJ_P0059682 Zbtb10 protein_coding protein_coding MGP_C3HHeJ_T0004143.1 MGP_C3HHeJ_G0003645.1 mouse_genomes_project 3 30177800 30178342 - Gm37592 antisense antisense MGP_C3HHeJ_T0013827.1 MGP_C3HHeJ_G0011931.1 mouse_genomes_project 3 31445152 31448098 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007630.1 MGP_C3HHeJ_G0006236.1 mouse_genomes_project 3 136036438 136048282 + Gm43194 lincRNA lincRNA MGP_C3HHeJ_T0007631.1 MGP_C3HHeJ_G0006236.1 mouse_genomes_project 3 136036576 136049769 + Gm43194 lincRNA lincRNA MGP_C3HHeJ_T0061779.1 MGP_C3HHeJ_G0027207.1 mouse_genomes_project 3 92235582 92237142 + MGP_C3HHeJ_P0061779 Sprr2h protein_coding protein_coding MGP_C3HHeJ_T0061780.1 MGP_C3HHeJ_G0027207.1 mouse_genomes_project 3 92235597 92236917 + MGP_C3HHeJ_P0061780 Sprr2h protein_coding protein_coding MGP_C3HHeJ_T0062198.1 MGP_C3HHeJ_G0027319.1 mouse_genomes_project 3 96523738 96524119 + MGP_C3HHeJ_P0062198 Hist2h2bb protein_coding protein_coding MGP_C3HHeJ_T0014179.1 MGP_C3HHeJ_G0012283.1 mouse_genomes_project 3 140594098 140594873 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099237.1 MGP_C3HHeJ_G0037431.1 mouse_genomes_project 3 15080891 15081018 - Gm23441 snRNA snRNA MGP_C3HHeJ_T0061841.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94436693 94462773 + MGP_C3HHeJ_P0061841 Rorc protein_coding protein_coding MGP_C3HHeJ_T0061842.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94441318 94463209 + MGP_C3HHeJ_P0061842 Rorc protein_coding protein_coding MGP_C3HHeJ_T0061843.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94441346 94462579 + Rorc protein_coding retained_intron MGP_C3HHeJ_T0061844.1 MGP_C3HHeJ_G0027253.1 mouse_genomes_project 3 94441402 94462581 + MGP_C3HHeJ_P0061844 Rorc protein_coding protein_coding MGP_C3HHeJ_T0060120.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33697178 33734083 - MGP_C3HHeJ_P0060120 Dcun1d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060121.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33697488 33734034 - MGP_C3HHeJ_P0060121 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060122.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33697514 33722493 - MGP_C3HHeJ_P0060122 Dcun1d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060123.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33699802 33733581 - MGP_C3HHeJ_P0060123 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060124.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33699866 33711361 - Dcun1d1 protein_coding processed_transcript MGP_C3HHeJ_T0060125.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33710659 33734062 - Dcun1d1 protein_coding processed_transcript MGP_C3HHeJ_T0060126.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33717460 33734071 - Dcun1d1 protein_coding retained_intron MGP_C3HHeJ_T0060127.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33720312 33731366 - MGP_C3HHeJ_P0060127 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060128.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33720315 33738678 - MGP_C3HHeJ_P0060128 Dcun1d1 protein_coding protein_coding MGP_C3HHeJ_T0060129.1 MGP_C3HHeJ_G0026867.1 mouse_genomes_project 3 33729779 33732705 - Dcun1d1 protein_coding retained_intron MGP_C3HHeJ_T0013875.1 MGP_C3HHeJ_G0011979.1 mouse_genomes_project 3 46166313 46167063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063950.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154773181 154806392 - Dnajb4 protein_coding processed_transcript MGP_C3HHeJ_T0063951.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154778625 154789570 - MGP_C3HHeJ_P0063951 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063952.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154778652 154806196 - MGP_C3HHeJ_P0063952 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063953.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154779755 154806132 - MGP_C3HHeJ_P0063953 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063954.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154789101 154806170 - Dnajb4 protein_coding processed_transcript MGP_C3HHeJ_T0063955.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154789287 154806170 - MGP_C3HHeJ_P0063955 Dnajb4 protein_coding protein_coding MGP_C3HHeJ_T0063956.1 MGP_C3HHeJ_G0027688.1 mouse_genomes_project 3 154801501 154806415 - Dnajb4 protein_coding retained_intron MGP_C3HHeJ_T0001091.1 MGP_C3HHeJ_G0001025.1 mouse_genomes_project 3 25847807 25849513 + TEC TEC MGP_C3HHeJ_T0098418.1 MGP_C3HHeJ_G0036623.1 mouse_genomes_project 3 101203041 101208256 - Gm43466 sense_intronic sense_intronic MGP_C3HHeJ_T0062338.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772538 99282971 + Zfp697 protein_coding processed_transcript MGP_C3HHeJ_T0062339.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772558 98803974 + Zfp697 protein_coding processed_transcript MGP_C3HHeJ_T0062340.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772558 98823205 + MGP_C3HHeJ_P0062340 Zfp697 protein_coding protein_coding MGP_C3HHeJ_T0062341.1 MGP_C3HHeJ_G0027356.1 mouse_genomes_project 3 98772625 98822968 + MGP_C3HHeJ_P0062341 Zfp697 protein_coding protein_coding MGP_C3HHeJ_T0007673.1 MGP_C3HHeJ_G0006272.1 mouse_genomes_project 3 148380316 148382389 + Gm43861 lincRNA lincRNA MGP_C3HHeJ_T0059717.1 MGP_C3HHeJ_G0026783.1 mouse_genomes_project 3 7763955 7786054 - MGP_C3HHeJ_P0059717 Snx16 protein_coding protein_coding MGP_C3HHeJ_T0059718.1 MGP_C3HHeJ_G0026783.1 mouse_genomes_project 3 7764284 7786039 - MGP_C3HHeJ_P0059718 Snx16 protein_coding protein_coding MGP_C3HHeJ_T0059719.1 MGP_C3HHeJ_G0026783.1 mouse_genomes_project 3 7765075 7786052 - MGP_C3HHeJ_P0059719 Snx16 protein_coding protein_coding MGP_C3HHeJ_T0001328.1 MGP_C3HHeJ_G0001259.1 mouse_genomes_project 3 137784729 137786980 + TEC TEC MGP_C3HHeJ_T0061041.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84182328 84350313 + MGP_C3HHeJ_P0061041 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061042.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84182538 84348797 + Fbxw7 protein_coding retained_intron MGP_C3HHeJ_T0061043.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84233874 84350313 + MGP_C3HHeJ_P0061043 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061044.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84296813 84350312 + MGP_C3HHeJ_P0061044 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061045.1 MGP_C3HHeJ_G0027064.1 mouse_genomes_project 3 84323342 84348760 + MGP_C3HHeJ_P0061045 Fbxw7 protein_coding protein_coding MGP_C3HHeJ_T0061183.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87541810 87547643 - Hapln2 protein_coding retained_intron MGP_C3HHeJ_T0061184.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87542121 87547538 - MGP_C3HHeJ_P0061184 Hapln2 protein_coding protein_coding MGP_C3HHeJ_T0061185.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87542698 87543734 - Hapln2 protein_coding retained_intron MGP_C3HHeJ_T0061186.1 MGP_C3HHeJ_G0027095.1 mouse_genomes_project 3 87543594 87547552 - MGP_C3HHeJ_P0061186 Hapln2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063492.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135109049 135184450 + MGP_C3HHeJ_P0063492 Ppa2 protein_coding protein_coding MGP_C3HHeJ_T0063493.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135109061 135184607 + MGP_C3HHeJ_P0063493 Ppa2 protein_coding protein_coding MGP_C3HHeJ_T0063494.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135109421 135176812 + Ppa2 protein_coding processed_transcript MGP_C3HHeJ_T0063495.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135120412 135125512 + Ppa2 protein_coding retained_intron MGP_C3HHeJ_T0063496.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135138465 135174294 + Ppa2 protein_coding processed_transcript MGP_C3HHeJ_T0063497.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135138638 135184454 + Ppa2 protein_coding retained_intron MGP_C3HHeJ_T0063498.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135150292 135184439 + MGP_C3HHeJ_P0063498 Ppa2 protein_coding protein_coding MGP_C3HHeJ_T0063499.1 MGP_C3HHeJ_G0027598.1 mouse_genomes_project 3 135178778 135180812 + Ppa2 protein_coding retained_intron MGP_C3HHeJ_T0060745.1 MGP_C3HHeJ_G0026993.1 mouse_genomes_project 3 65053668 65059564 + MGP_C3HHeJ_P0060745 Ptx3 protein_coding protein_coding MGP_C3HHeJ_T0060746.1 MGP_C3HHeJ_G0026993.1 mouse_genomes_project 3 65054003 65055189 + Ptx3 protein_coding retained_intron MGP_C3HHeJ_T0001342.1 MGP_C3HHeJ_G0001273.1 mouse_genomes_project 3 154417301 154420755 + TEC TEC MGP_C3HHeJ_T0062959.1 MGP_C3HHeJ_G0027499.1 mouse_genomes_project 3 114700776 114704091 - MGP_C3HHeJ_P0062959 Amy2a1 protein_coding protein_coding MGP_C3HHeJ_T0061560.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89275621 89278341 + Adar protein_coding retained_intron MGP_C3HHeJ_T0061561.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89275931 89296773 + Adar protein_coding processed_transcript MGP_C3HHeJ_T0061562.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292371 89313972 + MGP_C3HHeJ_P0061562 Adar protein_coding protein_coding MGP_C3HHeJ_T0061563.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292371 89313972 + MGP_C3HHeJ_P0061563 Adar protein_coding protein_coding MGP_C3HHeJ_T0061564.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292371 89313972 + MGP_C3HHeJ_P0061564 Adar protein_coding protein_coding MGP_C3HHeJ_T0061565.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89292434 89316019 + MGP_C3HHeJ_P0061565 Adar protein_coding protein_coding MGP_C3HHeJ_T0061566.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89299205 89300909 + Adar protein_coding retained_intron MGP_C3HHeJ_T0061567.1 MGP_C3HHeJ_G0027159.1 mouse_genomes_project 3 89308248 89309815 + Adar protein_coding retained_intron MGP_C3HHeJ_T0014069.1 MGP_C3HHeJ_G0012173.1 mouse_genomes_project 3 105243078 105243796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061469.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88770678 88781568 - MGP_C3HHeJ_P0061469 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0061470.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88770678 88783500 - MGP_C3HHeJ_P0061470 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0061471.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88770678 88781754 - MGP_C3HHeJ_P0061471 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0061472.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88771336 88775844 - Trim46 protein_coding processed_transcript MGP_C3HHeJ_T0061473.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88771369 88783475 - MGP_C3HHeJ_P0061473 Trim46 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061474.1 MGP_C3HHeJ_G0027140.1 mouse_genomes_project 3 88780848 88783912 - MGP_C3HHeJ_P0061474 Trim46 protein_coding protein_coding MGP_C3HHeJ_T0060153.1 MGP_C3HHeJ_G0026873.1 mouse_genomes_project 3 34274706 34301277 - MGP_C3HHeJ_P0060153 Anxa5 protein_coding protein_coding MGP_C3HHeJ_T0060154.1 MGP_C3HHeJ_G0026873.1 mouse_genomes_project 3 34274947 34278118 - Anxa5 protein_coding retained_intron MGP_C3HHeJ_T0060155.1 MGP_C3HHeJ_G0026873.1 mouse_genomes_project 3 34277994 34301042 - MGP_C3HHeJ_P0060155 Anxa5 protein_coding protein_coding MGP_C3HHeJ_T0014142.1 MGP_C3HHeJ_G0012246.1 mouse_genomes_project 3 130672434 130673754 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061783.1 MGP_C3HHeJ_G0027210.1 mouse_genomes_project 3 92282951 92285083 - MGP_C3HHeJ_P0061783 protein_coding protein_coding MGP_C3HHeJ_T0013797.1 MGP_C3HHeJ_G0011901.1 mouse_genomes_project 3 16899699 16900447 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001246.1 MGP_C3HHeJ_G0001178.1 mouse_genomes_project 3 107490826 107492859 + TEC TEC MGP_C3HHeJ_T0063259.1 MGP_C3HHeJ_G0027558.1 mouse_genomes_project 3 127969714 128057032 + MGP_C3HHeJ_P0063259 Arsj protein_coding protein_coding MGP_C3HHeJ_T0061941.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181531 95191242 - MGP_C3HHeJ_P0061941 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061942.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181534 95191180 - MGP_C3HHeJ_P0061942 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061943.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181541 95184106 - MGP_C3HHeJ_P0061943 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061944.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181542 95191176 - Psmd4 protein_coding retained_intron MGP_C3HHeJ_T0061945.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181542 95191171 - MGP_C3HHeJ_P0061945 Psmd4 protein_coding protein_coding MGP_C3HHeJ_T0061946.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181760 95191173 - Psmd4 protein_coding retained_intron MGP_C3HHeJ_T0061947.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95181765 95182755 - Psmd4 protein_coding retained_intron MGP_C3HHeJ_T0061948.1 MGP_C3HHeJ_G0027269.1 mouse_genomes_project 3 95184661 95191178 - Psmd4 protein_coding processed_transcript MGP_C3HHeJ_T0061738.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90158157 90164050 + MGP_C3HHeJ_P0061738 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061739.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90158218 90163916 + MGP_C3HHeJ_P0061739 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061740.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90158228 90163637 + S100a16 protein_coding processed_transcript MGP_C3HHeJ_T0061741.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90159788 90163829 + MGP_C3HHeJ_P0061741 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061742.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90160191 90163331 + MGP_C3HHeJ_P0061742 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061743.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90162049 90163650 + MGP_C3HHeJ_P0061743 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061744.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90162052 90163764 + MGP_C3HHeJ_P0061744 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0061745.1 MGP_C3HHeJ_G0027186.1 mouse_genomes_project 3 90162064 90164053 + MGP_C3HHeJ_P0061745 S100a16 protein_coding protein_coding MGP_C3HHeJ_T0001134.1 MGP_C3HHeJ_G0001068.1 mouse_genomes_project 3 40489278 40489823 + TEC TEC MGP_C3HHeJ_T0013815.1 MGP_C3HHeJ_G0011919.1 mouse_genomes_project 3 24515388 24516553 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007471.1 MGP_C3HHeJ_G0006112.1 mouse_genomes_project 3 56350766 56355337 - Gm42512 lincRNA lincRNA MGP_C3HHeJ_T0013803.1 MGP_C3HHeJ_G0011907.1 mouse_genomes_project 3 18137970 18139582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060673.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61807163 61898979 + MGP_C3HHeJ_P0060673 Mme protein_coding protein_coding MGP_C3HHeJ_T0060674.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61866417 61899348 + MGP_C3HHeJ_P0060674 Mme protein_coding protein_coding MGP_C3HHeJ_T0060675.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61866599 61899340 + MGP_C3HHeJ_P0060675 Mme protein_coding protein_coding MGP_C3HHeJ_T0060676.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61866712 61956938 + MGP_C3HHeJ_P0060676 Mme protein_coding protein_coding MGP_C3HHeJ_T0060677.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61867023 61962796 + MGP_C3HHeJ_P0060677 Mme protein_coding protein_coding MGP_C3HHeJ_T0060678.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61867246 61957465 + MGP_C3HHeJ_P0060678 Mme protein_coding protein_coding MGP_C3HHeJ_T0060679.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61868203 61899220 + MGP_C3HHeJ_P0060679 Mme protein_coding protein_coding MGP_C3HHeJ_T0060680.1 MGP_C3HHeJ_G0026977.1 mouse_genomes_project 3 61871311 61916150 + Mme protein_coding retained_intron MGP_C3HHeJ_T0007617.1 MGP_C3HHeJ_G0006224.1 mouse_genomes_project 3 132575405 132577196 + Gm43522 lincRNA lincRNA MGP_C3HHeJ_T0007618.1 MGP_C3HHeJ_G0006224.1 mouse_genomes_project 3 132576331 132578267 + Gm43522 lincRNA lincRNA MGP_C3HHeJ_T0014189.1 MGP_C3HHeJ_G0012293.1 mouse_genomes_project 3 142900850 142901391 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007529.1 MGP_C3HHeJ_G0006153.1 mouse_genomes_project 3 89329834 89335564 - 4632404H12Rik lincRNA lincRNA MGP_C3HHeJ_T0007530.1 MGP_C3HHeJ_G0006153.1 mouse_genomes_project 3 89330444 89335115 - 4632404H12Rik lincRNA lincRNA MGP_C3HHeJ_T0101939.1 MGP_C3HHeJ_G0039904.1 mouse_genomes_project 3 12178964 12187000 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004129.1 MGP_C3HHeJ_G0003636.1 mouse_genomes_project 3 4808230 4893317 + Gm16685 antisense antisense MGP_C3HHeJ_T0062908.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109887587 109924658 - MGP_C3HHeJ_P0062908 Fndc7 protein_coding protein_coding MGP_C3HHeJ_T0062909.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109887592 109892521 - Fndc7 protein_coding processed_transcript MGP_C3HHeJ_T0062910.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109889232 109924960 - MGP_C3HHeJ_P0062910 Fndc7 protein_coding protein_coding MGP_C3HHeJ_T0062911.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109889249 109924767 - MGP_C3HHeJ_P0062911 Fndc7 protein_coding protein_coding MGP_C3HHeJ_T0062912.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109889997 109892517 - Fndc7 protein_coding processed_transcript MGP_C3HHeJ_T0062913.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109896767 109904655 - Fndc7 protein_coding processed_transcript MGP_C3HHeJ_T0062914.1 MGP_C3HHeJ_G0027489.1 mouse_genomes_project 3 109903396 109915806 - Fndc7 protein_coding retained_intron MGP_C3HHeJ_T0013849.1 MGP_C3HHeJ_G0011953.1 mouse_genomes_project 3 36076713 36077056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060629.1 MGP_C3HHeJ_G0026967.1 mouse_genomes_project 3 58480041 58497980 + MGP_C3HHeJ_P0060629 Aadacl2 protein_coding protein_coding MGP_C3HHeJ_T0098582.1 MGP_C3HHeJ_G0036777.1 mouse_genomes_project 3 91936343 91983104 - 4930511M18Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0063461.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134463681 134486877 - MGP_C3HHeJ_P0063461 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063462.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134474928 134477922 - Aimp1 protein_coding retained_intron MGP_C3HHeJ_T0063463.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134475191 134480232 - Aimp1 protein_coding retained_intron MGP_C3HHeJ_T0063464.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477151 134487363 - MGP_C3HHeJ_P0063464 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063465.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477241 134487115 - MGP_C3HHeJ_P0063465 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063466.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477257 134486830 - MGP_C3HHeJ_P0063466 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063467.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134477952 134487117 - MGP_C3HHeJ_P0063467 Aimp1 protein_coding protein_coding MGP_C3HHeJ_T0063468.1 MGP_C3HHeJ_G0027592.1 mouse_genomes_project 3 134482871 134486829 - Aimp1 protein_coding retained_intron MGP_C3HHeJ_T0063732.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808213 144857525 + MGP_C3HHeJ_P0063732 Kyat3 protein_coding protein_coding MGP_C3HHeJ_T0063733.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808242 144859868 + MGP_C3HHeJ_P0063733 Kyat3 protein_coding protein_coding MGP_C3HHeJ_T0063734.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808248 144838276 + MGP_C3HHeJ_P0063734 Kyat3 protein_coding protein_coding MGP_C3HHeJ_T0063735.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144808256 144857336 + MGP_C3HHeJ_P0063735 Kyat3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063736.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144835193 144843368 + Kyat3 protein_coding processed_transcript MGP_C3HHeJ_T0063737.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144840470 144842431 + Kyat3 protein_coding retained_intron MGP_C3HHeJ_T0063738.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144850625 144853961 + Kyat3 protein_coding retained_intron MGP_C3HHeJ_T0063739.1 MGP_C3HHeJ_G0027645.1 mouse_genomes_project 3 144851524 144857334 + Kyat3 protein_coding processed_transcript MGP_C3HHeJ_T0007638.1 MGP_C3HHeJ_G0006243.1 mouse_genomes_project 3 139660907 139669137 + Gm42610 lincRNA lincRNA MGP_C3HHeJ_T0099265.1 MGP_C3HHeJ_G0037459.1 mouse_genomes_project 3 78393158 78393262 + Gm24150 snRNA snRNA MGP_C3HHeJ_T0099286.1 MGP_C3HHeJ_G0037480.1 mouse_genomes_project 3 96621214 96621379 + Rnu1b1 snRNA snRNA MGP_C3HHeJ_T0014033.1 MGP_C3HHeJ_G0012137.1 mouse_genomes_project 3 96036015 96036910 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061290.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096790 88098066 - Lamtor2 protein_coding retained_intron MGP_C3HHeJ_T0061291.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096790 88100007 - MGP_C3HHeJ_P0061291 Lamtor2 protein_coding protein_coding MGP_C3HHeJ_T0061292.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096791 88099842 - MGP_C3HHeJ_P0061292 Lamtor2 protein_coding protein_coding MGP_C3HHeJ_T0061293.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88096792 88099876 - Lamtor2 protein_coding processed_transcript MGP_C3HHeJ_T0061294.1 MGP_C3HHeJ_G0027116.1 mouse_genomes_project 3 88099212 88100057 - Lamtor2 protein_coding retained_intron MGP_C3HHeJ_T0062263.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97137653 97159006 + MGP_C3HHeJ_P0062263 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062264.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97137832 97159091 + MGP_C3HHeJ_P0062264 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062265.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97138445 97178787 + MGP_C3HHeJ_P0062265 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062266.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97140523 97178607 + MGP_C3HHeJ_P0062266 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062267.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97140540 97178333 + MGP_C3HHeJ_P0062267 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0062268.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97140540 97178457 + MGP_C3HHeJ_P0062268 Pdzk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062269.1 MGP_C3HHeJ_G0027338.1 mouse_genomes_project 3 97141589 97157727 + MGP_C3HHeJ_P0062269 Pdzk1 protein_coding protein_coding MGP_C3HHeJ_T0017794.1 MGP_C3HHeJ_G0015289.1 mouse_genomes_project 3 144998266 145015627 + Gm43646 processed_transcript processed_transcript MGP_C3HHeJ_T0013843.1 MGP_C3HHeJ_G0011947.1 mouse_genomes_project 3 34960514 34961610 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007644.1 MGP_C3HHeJ_G0006249.1 mouse_genomes_project 3 142763517 142833179 - lincRNA lincRNA MGP_C3HHeJ_T0007645.1 MGP_C3HHeJ_G0006249.1 mouse_genomes_project 3 142832539 142833179 - lincRNA lincRNA MGP_C3HHeJ_T0062451.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103539364 103670856 - MGP_C3HHeJ_P0062451 Sycp1 protein_coding protein_coding MGP_C3HHeJ_T0062452.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103539570 103541548 - Sycp1 protein_coding processed_transcript MGP_C3HHeJ_T0062453.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103539606 103670856 - MGP_C3HHeJ_P0062453 Sycp1 protein_coding protein_coding MGP_C3HHeJ_T0062454.1 MGP_C3HHeJ_G0027386.1 mouse_genomes_project 3 103653666 103670846 - MGP_C3HHeJ_P0062454 Sycp1 protein_coding protein_coding MGP_C3HHeJ_T0062960.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114756062 114771639 - MGP_C3HHeJ_P0062960 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062961.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114756358 114762229 - protein_coding retained_intron MGP_C3HHeJ_T0062962.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114762900 114775149 - MGP_C3HHeJ_P0062962 protein_coding protein_coding MGP_C3HHeJ_T0062963.1 MGP_C3HHeJ_G0027500.1 mouse_genomes_project 3 114765848 114813455 - MGP_C3HHeJ_P0062963 protein_coding protein_coding MGP_C3HHeJ_T0101964.1 MGP_C3HHeJ_G0039929.1 mouse_genomes_project 3 94342375 94342567 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010443.1 MGP_C3HHeJ_G0008576.1 mouse_genomes_project 3 88763358 88763441 - Mir92b miRNA miRNA MGP_C3HHeJ_T0013952.1 MGP_C3HHeJ_G0012056.1 mouse_genomes_project 3 68829794 68830665 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059756.1 MGP_C3HHeJ_G0026796.1 mouse_genomes_project 3 13024615 13061141 - protein_coding retained_intron MGP_C3HHeJ_T0101978.1 MGP_C3HHeJ_G0039943.1 mouse_genomes_project 3 114384277 114407983 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013763.1 MGP_C3HHeJ_G0011867.1 mouse_genomes_project 3 7417451 7417551 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007409.1 MGP_C3HHeJ_G0006066.1 mouse_genomes_project 3 32034574 32091445 - Gm38505 lincRNA lincRNA MGP_C3HHeJ_T0001136.1 MGP_C3HHeJ_G0001070.1 mouse_genomes_project 3 43224969 43227561 - TEC TEC MGP_C3HHeJ_T0062680.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107403649 107409841 + Dennd2d protein_coding processed_transcript MGP_C3HHeJ_T0062681.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107403675 107425220 + MGP_C3HHeJ_P0062681 Dennd2d protein_coding protein_coding MGP_C3HHeJ_T0062682.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107403694 107409859 + MGP_C3HHeJ_P0062682 Dennd2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062683.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107407303 107423183 + MGP_C3HHeJ_P0062683 Dennd2d protein_coding protein_coding MGP_C3HHeJ_T0062684.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107408671 107409895 + Dennd2d protein_coding retained_intron MGP_C3HHeJ_T0062685.1 MGP_C3HHeJ_G0027435.1 mouse_genomes_project 3 107414426 107416547 + Dennd2d protein_coding retained_intron MGP_C3HHeJ_T0060259.1 MGP_C3HHeJ_G0026893.1 mouse_genomes_project 3 38529277 38546502 + MGP_C3HHeJ_P0060259 Slc25a31 protein_coding protein_coding MGP_C3HHeJ_T0099270.1 MGP_C3HHeJ_G0037464.1 mouse_genomes_project 3 85605619 85605730 + Gm23025 snRNA snRNA MGP_C3HHeJ_T0014128.1 MGP_C3HHeJ_G0012232.1 mouse_genomes_project 3 124513498 124513693 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013793.1 MGP_C3HHeJ_G0011897.1 mouse_genomes_project 3 15837509 15838708 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001078.1 MGP_C3HHeJ_G0001012.1 mouse_genomes_project 3 7574651 7575148 + TEC TEC MGP_C3HHeJ_T0062623.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105855294 105907798 - MGP_C3HHeJ_P0062623 Cttnbp2nl protein_coding protein_coding MGP_C3HHeJ_T0062624.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105855296 105907603 - MGP_C3HHeJ_P0062624 Cttnbp2nl protein_coding protein_coding MGP_C3HHeJ_T0062625.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105859444 105907606 - MGP_C3HHeJ_P0062625 Cttnbp2nl protein_coding protein_coding MGP_C3HHeJ_T0062626.1 MGP_C3HHeJ_G0027417.1 mouse_genomes_project 3 105859474 105907577 - Cttnbp2nl protein_coding retained_intron MGP_C3HHeJ_T0007400.1 MGP_C3HHeJ_G0006058.1 mouse_genomes_project 3 24628197 24631187 + 1700125G22Rik lincRNA lincRNA MGP_C3HHeJ_T0100577.1 MGP_C3HHeJ_G0038771.1 mouse_genomes_project 3 122112193 122112321 - Gm25013 snoRNA snoRNA MGP_C3HHeJ_T0007431.1 MGP_C3HHeJ_G0006086.1 mouse_genomes_project 3 36314833 36331688 - Gm43536 lincRNA lincRNA MGP_C3HHeJ_T0007432.1 MGP_C3HHeJ_G0006086.1 mouse_genomes_project 3 36315637 36331690 - Gm43536 lincRNA lincRNA MGP_C3HHeJ_T0007433.1 MGP_C3HHeJ_G0006086.1 mouse_genomes_project 3 36317292 36331930 - Gm43536 lincRNA lincRNA MGP_C3HHeJ_T0060249.1 MGP_C3HHeJ_G0026889.1 mouse_genomes_project 3 35572863 35578973 - protein_coding processed_transcript MGP_C3HHeJ_T0001205.1 MGP_C3HHeJ_G0001137.1 mouse_genomes_project 3 67279975 67286893 + TEC TEC MGP_C3HHeJ_T0059859.1 MGP_C3HHeJ_G0026820.1 mouse_genomes_project 3 24093708 24458776 + MGP_C3HHeJ_P0059859 Spata16 protein_coding protein_coding MGP_C3HHeJ_T0059860.1 MGP_C3HHeJ_G0026820.1 mouse_genomes_project 3 24093735 24393466 + MGP_C3HHeJ_P0059860 Spata16 protein_coding protein_coding MGP_C3HHeJ_T0063394.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131683724 131696985 + MGP_C3HHeJ_P0063394 Casp6 protein_coding protein_coding MGP_C3HHeJ_T0063395.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131683757 131691626 + Casp6 protein_coding processed_transcript MGP_C3HHeJ_T0063396.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131683800 131687714 + Casp6 protein_coding retained_intron MGP_C3HHeJ_T0063397.1 MGP_C3HHeJ_G0027577.1 mouse_genomes_project 3 131693343 131696483 + Casp6 protein_coding retained_intron MGP_C3HHeJ_T0014199.1 MGP_C3HHeJ_G0012303.1 mouse_genomes_project 3 147013212 147014887 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060435.1 MGP_C3HHeJ_G0026922.1 mouse_genomes_project 3 51766856 51777839 + Stoml3 protein_coding retained_intron MGP_C3HHeJ_T0060436.1 MGP_C3HHeJ_G0026922.1 mouse_genomes_project 3 51766930 51789695 + MGP_C3HHeJ_P0060436 Stoml3 protein_coding protein_coding MGP_C3HHeJ_T0060776.1 MGP_C3HHeJ_G0027001.1 mouse_genomes_project 3 66734674 66901307 + MGP_C3HHeJ_P0060776 Iqcj protein_coding protein_coding MGP_C3HHeJ_T0060778.1 MGP_C3HHeJ_G0027001.1 mouse_genomes_project 3 66734767 66908796 + MGP_C3HHeJ_P0060778 Iqcj protein_coding unknown_likely_coding MGP_C3HHeJ_T0001270.1 MGP_C3HHeJ_G0001202.1 mouse_genomes_project 3 123275489 123279092 - TEC TEC MGP_C3HHeJ_T0004233.1 MGP_C3HHeJ_G0003710.1 mouse_genomes_project 3 96841210 96843366 - Gm15441 antisense antisense MGP_C3HHeJ_T0004234.1 MGP_C3HHeJ_G0003710.1 mouse_genomes_project 3 96841233 96852232 - Gm15441 antisense antisense MGP_C3HHeJ_T0062060.1 MGP_C3HHeJ_G0027290.1 mouse_genomes_project 3 95734907 95765329 + MGP_C3HHeJ_P0062060 Ctss protein_coding protein_coding MGP_C3HHeJ_T0062061.1 MGP_C3HHeJ_G0027290.1 mouse_genomes_project 3 95735015 95765335 + MGP_C3HHeJ_P0062061 Ctss protein_coding protein_coding MGP_C3HHeJ_T0063077.1 MGP_C3HHeJ_G0027524.1 mouse_genomes_project 3 118926776 119048541 + MGP_C3HHeJ_P0063077 Plppr5 protein_coding protein_coding MGP_C3HHeJ_T0063078.1 MGP_C3HHeJ_G0027524.1 mouse_genomes_project 3 118927167 119048541 + MGP_C3HHeJ_P0063078 Plppr5 protein_coding protein_coding MGP_C3HHeJ_T0007422.1 MGP_C3HHeJ_G0006078.1 mouse_genomes_project 3 34339940 34346632 - Gm11549 lincRNA lincRNA MGP_C3HHeJ_T0007625.1 MGP_C3HHeJ_G0006231.1 mouse_genomes_project 3 134643566 134684694 - Gm29811 lincRNA lincRNA MGP_C3HHeJ_T0098438.1 MGP_C3HHeJ_G0036643.1 mouse_genomes_project 3 104896767 104897835 - 9530097N15Rik sense_intronic sense_intronic MGP_C3HHeJ_T0004201.1 MGP_C3HHeJ_G0003688.1 mouse_genomes_project 3 88171689 88176274 - Gm20652 antisense antisense MGP_C3HHeJ_T0001366.1 MGP_C3HHeJ_G0001297.1 mouse_genomes_project 3 161002641 161004324 + TEC TEC MGP_C3HHeJ_T0001092.1 MGP_C3HHeJ_G0001026.1 mouse_genomes_project 3 26740653 26742733 + TEC TEC MGP_C3HHeJ_T0062332.1 MGP_C3HHeJ_G0027354.1 mouse_genomes_project 3 98660475 98686876 + MGP_C3HHeJ_P0062332 Hmgcs2 protein_coding protein_coding MGP_C3HHeJ_T0062333.1 MGP_C3HHeJ_G0027354.1 mouse_genomes_project 3 98660475 98686882 + MGP_C3HHeJ_P0062333 Hmgcs2 protein_coding protein_coding MGP_C3HHeJ_T0007678.1 MGP_C3HHeJ_G0006277.1 mouse_genomes_project 3 150013518 150029248 - Gm36888 lincRNA lincRNA MGP_C3HHeJ_T0014060.1 MGP_C3HHeJ_G0012164.1 mouse_genomes_project 3 103106675 103107143 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013887.1 MGP_C3HHeJ_G0011991.1 mouse_genomes_project 3 49779392 49779705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063446.1 MGP_C3HHeJ_G0027587.1 mouse_genomes_project 3 133135518 133150142 - MGP_C3HHeJ_P0063446 Cyp2u1 protein_coding protein_coding MGP_C3HHeJ_T0063447.1 MGP_C3HHeJ_G0027587.1 mouse_genomes_project 3 133140206 133150118 - MGP_C3HHeJ_P0063447 Cyp2u1 protein_coding protein_coding MGP_C3HHeJ_T0063448.1 MGP_C3HHeJ_G0027587.1 mouse_genomes_project 3 133141339 133150145 - Cyp2u1 protein_coding processed_transcript MGP_C3HHeJ_T0001294.1 MGP_C3HHeJ_G0001226.1 mouse_genomes_project 3 128657062 128659550 - TEC TEC MGP_C3HHeJ_T0063073.1 MGP_C3HHeJ_G0027522.1 mouse_genomes_project 3 118304301 118321700 + MGP_C3HHeJ_P0063073 4930455H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063599.1 MGP_C3HHeJ_G0027614.1 mouse_genomes_project 3 139537433 139540011 - protein_coding lincRNA MGP_C3HHeJ_T0061865.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94564815 94572866 + MGP_C3HHeJ_P0061865 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061866.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566354 94579702 + MGP_C3HHeJ_P0061866 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061867.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566601 94579703 + MGP_C3HHeJ_P0061867 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061868.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566630 94579706 + MGP_C3HHeJ_P0061868 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061869.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94566640 94575115 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061870.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94570098 94574758 + Celf3 protein_coding processed_transcript MGP_C3HHeJ_T0061871.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94570265 94579702 + Celf3 protein_coding processed_transcript MGP_C3HHeJ_T0061872.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94571874 94579702 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061873.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94571911 94574486 + MGP_C3HHeJ_P0061873 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061874.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94571918 94574831 + MGP_C3HHeJ_P0061874 Celf3 protein_coding protein_coding MGP_C3HHeJ_T0061875.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94572824 94579691 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061876.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94574192 94576158 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0061877.1 MGP_C3HHeJ_G0027259.1 mouse_genomes_project 3 94574748 94577101 + Celf3 protein_coding retained_intron MGP_C3HHeJ_T0010444.1 MGP_C3HHeJ_G0008577.1 mouse_genomes_project 3 89593222 89593280 - Mir7669 miRNA miRNA MGP_C3HHeJ_T0004148.1 MGP_C3HHeJ_G0003650.1 mouse_genomes_project 3 33734291 33743956 + Gm15952 antisense antisense MGP_C3HHeJ_T0004149.1 MGP_C3HHeJ_G0003650.1 mouse_genomes_project 3 33734291 33791817 + Gm15952 antisense antisense MGP_C3HHeJ_T0004150.1 MGP_C3HHeJ_G0003650.1 mouse_genomes_project 3 33734303 33739288 + Gm15952 antisense antisense MGP_C3HHeJ_T0061550.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986835 89002644 + MGP_C3HHeJ_P0061550 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0061551.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986841 88997215 + Pbxip1 protein_coding processed_transcript MGP_C3HHeJ_T0061552.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986844 88997854 + MGP_C3HHeJ_P0061552 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0061553.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986883 88997163 + MGP_C3HHeJ_P0061553 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0061554.1 MGP_C3HHeJ_G0027156.1 mouse_genomes_project 3 88986885 88997207 + MGP_C3HHeJ_P0061554 Pbxip1 protein_coding protein_coding MGP_C3HHeJ_T0060250.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36337284 36373512 - MGP_C3HHeJ_P0060250 protein_coding protein_coding MGP_C3HHeJ_T0060251.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36337677 36371761 - MGP_C3HHeJ_P0060251 protein_coding protein_coding MGP_C3HHeJ_T0060252.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36340107 36343583 - MGP_C3HHeJ_P0060252 protein_coding protein_coding MGP_C3HHeJ_T0060253.1 MGP_C3HHeJ_G0026890.1 mouse_genomes_project 3 36371920 36373483 - protein_coding processed_transcript MGP_C3HHeJ_T0013759.1 MGP_C3HHeJ_G0011863.1 mouse_genomes_project 3 6345660 6346105 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062561.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104716811 104775055 + MGP_C3HHeJ_P0062561 Rsbn1 protein_coding protein_coding MGP_C3HHeJ_T0062562.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104716842 104775078 + MGP_C3HHeJ_P0062562 Rsbn1 protein_coding protein_coding MGP_C3HHeJ_T0062563.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104717258 104772313 + MGP_C3HHeJ_P0062563 Rsbn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062564.1 MGP_C3HHeJ_G0027405.1 mouse_genomes_project 3 104732046 104768578 + MGP_C3HHeJ_P0062564 Rsbn1 protein_coding protein_coding MGP_C3HHeJ_T0061036.1 MGP_C3HHeJ_G0027062.1 mouse_genomes_project 3 83944836 83948295 + MGP_C3HHeJ_P0061036 Tigd4 protein_coding protein_coding MGP_C3HHeJ_T0061706.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90062314 90077696 - MGP_C3HHeJ_P0061706 Npr1 protein_coding protein_coding MGP_C3HHeJ_T0061707.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90062433 90063536 - Npr1 protein_coding retained_intron MGP_C3HHeJ_T0061708.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90066841 90069305 - Npr1 protein_coding processed_transcript MGP_C3HHeJ_T0061709.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90069227 90070768 - Npr1 protein_coding retained_intron MGP_C3HHeJ_T0061710.1 MGP_C3HHeJ_G0027179.1 mouse_genomes_project 3 90069246 90073250 - MGP_C3HHeJ_P0061710 Npr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001138.1 MGP_C3HHeJ_G0001072.1 mouse_genomes_project 3 43407914 43410495 + TEC TEC MGP_C3HHeJ_T0064132.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160744841 160804393 + MGP_C3HHeJ_P0064132 Ankrd13c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064133.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160745016 160802546 + MGP_C3HHeJ_P0064133 Ankrd13c protein_coding protein_coding MGP_C3HHeJ_T0064134.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160745016 160805000 + MGP_C3HHeJ_P0064134 Ankrd13c protein_coding protein_coding MGP_C3HHeJ_T0064135.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160745068 160803809 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064136.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160785124 160791336 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064137.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160788314 160800635 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064138.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160790226 160797756 + Ankrd13c protein_coding processed_transcript MGP_C3HHeJ_T0064139.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160790804 160797726 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064140.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160795120 160799733 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0064141.1 MGP_C3HHeJ_G0027714.1 mouse_genomes_project 3 160796034 160797772 + Ankrd13c protein_coding retained_intron MGP_C3HHeJ_T0062066.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805736 95838344 + MGP_C3HHeJ_P0062066 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062067.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805736 95838339 + MGP_C3HHeJ_P0062067 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062068.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805736 95838344 + MGP_C3HHeJ_P0062068 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062069.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805771 95838338 + MGP_C3HHeJ_P0062069 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062070.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805771 95836661 + MGP_C3HHeJ_P0062070 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062071.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805776 95838337 + MGP_C3HHeJ_P0062071 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062072.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805783 95838338 + MGP_C3HHeJ_P0062072 Golph3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062073.1 MGP_C3HHeJ_G0027292.1 mouse_genomes_project 3 95805792 95836592 + MGP_C3HHeJ_P0062073 Golph3l protein_coding protein_coding MGP_C3HHeJ_T0062727.1 MGP_C3HHeJ_G0027447.1 mouse_genomes_project 3 108230078 108236087 + MGP_C3HHeJ_P0062727 Lamtor5 protein_coding protein_coding MGP_C3HHeJ_T0062728.1 MGP_C3HHeJ_G0027447.1 mouse_genomes_project 3 108230219 108236090 + MGP_C3HHeJ_P0062728 Lamtor5 protein_coding protein_coding MGP_C3HHeJ_T0061358.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88419591 88429002 - MGP_C3HHeJ_P0061358 Msto1 protein_coding protein_coding MGP_C3HHeJ_T0061359.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88423112 88427145 - Msto1 protein_coding retained_intron MGP_C3HHeJ_T0061360.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88424685 88429070 - MGP_C3HHeJ_P0061360 Msto1 protein_coding protein_coding MGP_C3HHeJ_T0061361.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88424714 88428974 - Msto1 protein_coding retained_intron MGP_C3HHeJ_T0061362.1 MGP_C3HHeJ_G0027125.1 mouse_genomes_project 3 88426429 88428953 - Msto1 protein_coding retained_intron MGP_C3HHeJ_T0004275.1 MGP_C3HHeJ_G0003731.1 mouse_genomes_project 3 109735065 109738805 + Gm27244 antisense antisense MGP_C3HHeJ_T0013986.1 MGP_C3HHeJ_G0012090.1 mouse_genomes_project 3 80661304 80661584 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100541.1 MGP_C3HHeJ_G0038735.1 mouse_genomes_project 3 62971262 62971420 - Gm23897 snoRNA snoRNA MGP_C3HHeJ_T0013863.1 MGP_C3HHeJ_G0011967.1 mouse_genomes_project 3 41729094 41729623 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004178.1 MGP_C3HHeJ_G0003672.1 mouse_genomes_project 3 59905895 59909244 - Gm37696 antisense antisense MGP_C3HHeJ_T0013885.1 MGP_C3HHeJ_G0011989.1 mouse_genomes_project 3 49560256 49560641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007488.1 MGP_C3HHeJ_G0006126.1 mouse_genomes_project 3 72376155 72518712 + Gm38353 lincRNA lincRNA MGP_C3HHeJ_T0063322.1 MGP_C3HHeJ_G0027563.1 mouse_genomes_project 3 129312738 129315234 + MGP_C3HHeJ_P0063322 Neurog2 protein_coding protein_coding MGP_C3HHeJ_T0007675.1 MGP_C3HHeJ_G0006274.1 mouse_genomes_project 3 149479072 149511950 + Gm29771 lincRNA lincRNA MGP_C3HHeJ_T0063347.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942691 130966457 + MGP_C3HHeJ_P0063347 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063348.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942735 130966445 + MGP_C3HHeJ_P0063348 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063349.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942739 130966458 + MGP_C3HHeJ_P0063349 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063350.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130942782 130947391 + MGP_C3HHeJ_P0063350 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063351.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130946760 130965764 + MGP_C3HHeJ_P0063351 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063352.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130959743 130962586 + Pitx2 protein_coding retained_intron MGP_C3HHeJ_T0063353.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130959783 130966455 + MGP_C3HHeJ_P0063353 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0063354.1 MGP_C3HHeJ_G0027568.1 mouse_genomes_project 3 130960086 130962436 + MGP_C3HHeJ_P0063354 Pitx2 protein_coding protein_coding MGP_C3HHeJ_T0099282.1 MGP_C3HHeJ_G0037476.1 mouse_genomes_project 3 95040721 95040823 - Gm26279 snRNA snRNA MGP_C3HHeJ_T0061809.1 MGP_C3HHeJ_G0027234.1 mouse_genomes_project 3 92730271 92732129 - MGP_C3HHeJ_P0061809 2310050C09Rik protein_coding protein_coding MGP_C3HHeJ_T0060236.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35264515 35424094 + MGP_C3HHeJ_P0060236 Spata5 protein_coding protein_coding MGP_C3HHeJ_T0060237.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35264927 35424094 + MGP_C3HHeJ_P0060237 Spata5 protein_coding protein_coding MGP_C3HHeJ_T0060238.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35264941 35424094 + MGP_C3HHeJ_P0060238 Spata5 protein_coding protein_coding MGP_C3HHeJ_T0060239.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35265002 35274039 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060240.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35265481 35274801 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060241.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35280739 35287992 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060242.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35285406 35288112 + Spata5 protein_coding retained_intron MGP_C3HHeJ_T0060243.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35300354 35379716 + Spata5 protein_coding retained_intron MGP_C3HHeJ_T0060244.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35343888 35424007 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0060245.1 MGP_C3HHeJ_G0026887.1 mouse_genomes_project 3 35418078 35424088 + Spata5 protein_coding processed_transcript MGP_C3HHeJ_T0013938.1 MGP_C3HHeJ_G0012042.1 mouse_genomes_project 3 65709241 65710030 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007404.1 MGP_C3HHeJ_G0006062.1 mouse_genomes_project 3 28135052 28136438 - lincRNA lincRNA MGP_C3HHeJ_T0001141.1 MGP_C3HHeJ_G0001075.1 mouse_genomes_project 3 46225033 46225142 + TEC TEC MGP_C3HHeJ_T0004230.1 MGP_C3HHeJ_G0003707.1 mouse_genomes_project 3 96458993 96470395 - Gm15444 antisense antisense MGP_C3HHeJ_T0062627.1 MGP_C3HHeJ_G0027418.1 mouse_genomes_project 3 105920808 105932789 + MGP_C3HHeJ_P0062627 4930564D02Rik protein_coding protein_coding MGP_C3HHeJ_T0014133.1 MGP_C3HHeJ_G0012237.1 mouse_genomes_project 3 125557312 125558358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001293.1 MGP_C3HHeJ_G0001225.1 mouse_genomes_project 3 128635155 128636041 - TEC TEC MGP_C3HHeJ_T0014038.1 MGP_C3HHeJ_G0012142.1 mouse_genomes_project 3 96672909 96673361 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061497.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88881331 88893730 - MGP_C3HHeJ_P0061497 Adam15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061498.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882429 88893737 - MGP_C3HHeJ_P0061498 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061499.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882429 88893744 - MGP_C3HHeJ_P0061499 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061500.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882430 88883947 - Adam15 protein_coding processed_transcript MGP_C3HHeJ_T0061501.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882433 88883230 - Adam15 protein_coding processed_transcript MGP_C3HHeJ_T0061502.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882433 88893707 - MGP_C3HHeJ_P0061502 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061503.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882437 88893723 - MGP_C3HHeJ_P0061503 Adam15 protein_coding protein_coding MGP_C3HHeJ_T0061504.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882534 88883142 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061505.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882704 88883709 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061506.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88882863 88886469 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061507.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88885521 88893722 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061508.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88890275 88893708 - Adam15 protein_coding retained_intron MGP_C3HHeJ_T0061509.1 MGP_C3HHeJ_G0027147.1 mouse_genomes_project 3 88892265 88892855 - Adam15 protein_coding processed_transcript MGP_C3HHeJ_T0007449.1 MGP_C3HHeJ_G0006095.1 mouse_genomes_project 3 46777203 46780687 - 1700018B24Rik lincRNA lincRNA MGP_C3HHeJ_T0060881.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75217561 75889308 + MGP_C3HHeJ_P0060881 Fstl5 protein_coding protein_coding MGP_C3HHeJ_T0060882.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75217850 75720078 + Fstl5 protein_coding processed_transcript MGP_C3HHeJ_T0060883.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75218874 75887925 + MGP_C3HHeJ_P0060883 Fstl5 protein_coding protein_coding MGP_C3HHeJ_T0060884.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75765453 75768761 + Fstl5 protein_coding retained_intron MGP_C3HHeJ_T0060885.1 MGP_C3HHeJ_G0027026.1 mouse_genomes_project 3 75772869 75886838 + MGP_C3HHeJ_P0060885 Fstl5 protein_coding protein_coding MGP_C3HHeJ_T0014139.1 MGP_C3HHeJ_G0012243.1 mouse_genomes_project 3 129179660 129180006 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013782.1 MGP_C3HHeJ_G0011886.1 mouse_genomes_project 3 12058701 12058990 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059794.1 MGP_C3HHeJ_G0026809.1 mouse_genomes_project 3 17005947 17007943 - MGP_C3HHeJ_P0059794 Crh protein_coding protein_coding MGP_C3HHeJ_T0061786.1 MGP_C3HHeJ_G0027213.1 mouse_genomes_project 3 92314596 92317460 - MGP_C3HHeJ_P0061786 Sprr3 protein_coding protein_coding MGP_C3HHeJ_T0060980.1 MGP_C3HHeJ_G0027048.1 mouse_genomes_project 3 82293141 82300414 + MGP_C3HHeJ_P0060980 Fgg protein_coding protein_coding MGP_C3HHeJ_T0060981.1 MGP_C3HHeJ_G0027048.1 mouse_genomes_project 3 82293278 82300070 + MGP_C3HHeJ_P0060981 Fgg protein_coding protein_coding MGP_C3HHeJ_T0099309.1 MGP_C3HHeJ_G0037503.1 mouse_genomes_project 3 134747457 134747564 + Gm23196 snRNA snRNA MGP_C3HHeJ_T0060018.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176256 30187595 + MGP_C3HHeJ_P0060018 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060019.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176532 30187505 + MGP_C3HHeJ_P0060019 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060020.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176661 30186328 + MGP_C3HHeJ_P0060020 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060021.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30176893 30179173 + Zfp639 protein_coding processed_transcript MGP_C3HHeJ_T0060022.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30178175 30186391 + Zfp639 protein_coding retained_intron MGP_C3HHeJ_T0060023.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30178997 30186330 + MGP_C3HHeJ_P0060023 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060024.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30182056 30187447 + MGP_C3HHeJ_P0060024 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060025.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30183841 30187279 + MGP_C3HHeJ_P0060025 Zfp639 protein_coding protein_coding MGP_C3HHeJ_T0060026.1 MGP_C3HHeJ_G0026853.1 mouse_genomes_project 3 30185560 30186322 + Zfp639 protein_coding retained_intron MGP_C3HHeJ_T0063219.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124863234 124963684 + MGP_C3HHeJ_P0063219 Sec24d protein_coding protein_coding MGP_C3HHeJ_T0063220.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124863258 124876670 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063221.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124863269 124870189 + MGP_C3HHeJ_P0063221 Sec24d protein_coding protein_coding MGP_C3HHeJ_T0063222.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124888181 124963679 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063223.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124931461 124933402 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063224.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124933931 124948023 + Sec24d protein_coding processed_transcript MGP_C3HHeJ_T0063225.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124952945 124954003 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0063226.1 MGP_C3HHeJ_G0027549.1 mouse_genomes_project 3 124962756 124963679 + Sec24d protein_coding retained_intron MGP_C3HHeJ_T0010473.1 MGP_C3HHeJ_G0008606.1 mouse_genomes_project 3 137039795 137039901 + Gm24048 miRNA miRNA MGP_C3HHeJ_T0061627.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89634528 89644607 + MGP_C3HHeJ_P0061627 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061628.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89641240 + 4933434E20Rik protein_coding processed_transcript MGP_C3HHeJ_T0061629.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89636478 + 4933434E20Rik protein_coding retained_intron MGP_C3HHeJ_T0061630.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89641686 + MGP_C3HHeJ_P0061630 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061631.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89643583 + MGP_C3HHeJ_P0061631 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061632.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89645034 + MGP_C3HHeJ_P0061632 4933434E20Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061633.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89645031 + MGP_C3HHeJ_P0061633 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061634.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89635704 89645930 + MGP_C3HHeJ_P0061634 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0061635.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89636378 89641456 + 4933434E20Rik protein_coding retained_intron MGP_C3HHeJ_T0061636.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89641233 89644885 + 4933434E20Rik protein_coding retained_intron MGP_C3HHeJ_T0061637.1 MGP_C3HHeJ_G0027167.1 mouse_genomes_project 3 89645384 89650932 + MGP_C3HHeJ_P0061637 4933434E20Rik protein_coding protein_coding MGP_C3HHeJ_T0001215.1 MGP_C3HHeJ_G0001147.1 mouse_genomes_project 3 76892887 76894396 - TEC TEC MGP_C3HHeJ_T0010430.1 MGP_C3HHeJ_G0008563.1 mouse_genomes_project 3 49481962 49482028 + Gm24282 miRNA miRNA MGP_C3HHeJ_T0007535.1 MGP_C3HHeJ_G0006157.1 mouse_genomes_project 3 92703824 92704211 - Gm38201 lincRNA lincRNA MGP_C3HHeJ_T0001177.1 MGP_C3HHeJ_G0001109.1 mouse_genomes_project 3 51389437 51389893 + TEC TEC MGP_C3HHeJ_T0101940.1 MGP_C3HHeJ_G0039905.1 mouse_genomes_project 3 18933810 18935509 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0063740.1 MGP_C3HHeJ_G0027646.1 mouse_genomes_project 3 144879814 144899026 + MGP_C3HHeJ_P0063740 Gtf2b protein_coding protein_coding MGP_C3HHeJ_T0063741.1 MGP_C3HHeJ_G0027646.1 mouse_genomes_project 3 144879992 144883184 + Gtf2b protein_coding retained_intron MGP_C3HHeJ_T0001257.1 MGP_C3HHeJ_G0001189.1 mouse_genomes_project 3 117820377 117820816 + TEC TEC MGP_C3HHeJ_T0059749.1 MGP_C3HHeJ_G0026792.1 mouse_genomes_project 3 12303536 12311937 + MGP_C3HHeJ_P0059749 Car2 protein_coding protein_coding MGP_C3HHeJ_T0059750.1 MGP_C3HHeJ_G0026792.1 mouse_genomes_project 3 12303691 12317567 + MGP_C3HHeJ_P0059750 Car2 protein_coding protein_coding MGP_C3HHeJ_T0059751.1 MGP_C3HHeJ_G0026792.1 mouse_genomes_project 3 12303902 12305830 + Car2 protein_coding retained_intron MGP_C3HHeJ_T0064042.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510629 156563365 - MGP_C3HHeJ_P0064042 Msh4 protein_coding protein_coding MGP_C3HHeJ_T0064043.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156530843 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064044.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156535450 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064045.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156519004 - Msh4 protein_coding processed_transcript MGP_C3HHeJ_T0064046.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156535450 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064047.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156519030 - Msh4 protein_coding retained_intron MGP_C3HHeJ_T0064048.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510749 156561958 - MGP_C3HHeJ_P0064048 Msh4 protein_coding protein_coding MGP_C3HHeJ_T0064049.1 MGP_C3HHeJ_G0027699.1 mouse_genomes_project 3 156510753 156562118 - MGP_C3HHeJ_P0064049 Msh4 protein_coding protein_coding MGP_C3HHeJ_T0063069.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118253146 118305022 - MGP_C3HHeJ_P0063069 Palmd protein_coding protein_coding MGP_C3HHeJ_T0063070.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118256511 118304893 - MGP_C3HHeJ_P0063070 Palmd protein_coding protein_coding MGP_C3HHeJ_T0063071.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118261920 118305021 - MGP_C3HHeJ_P0063071 Palmd protein_coding protein_coding MGP_C3HHeJ_T0063072.1 MGP_C3HHeJ_G0027521.1 mouse_genomes_project 3 118301079 118304778 - Palmd protein_coding retained_intron MGP_C3HHeJ_T0001181.1 MGP_C3HHeJ_G0001113.1 mouse_genomes_project 3 53675748 53677879 + TEC TEC MGP_C3HHeJ_T0013856.1 MGP_C3HHeJ_G0011960.1 mouse_genomes_project 3 38696364 38696812 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062639.1 MGP_C3HHeJ_G0027423.1 mouse_genomes_project 3 106738044 106775486 + MGP_C3HHeJ_P0062639 Adora3 protein_coding protein_coding MGP_C3HHeJ_T0062644.1 MGP_C3HHeJ_G0027423.1 mouse_genomes_project 3 106771542 106776059 + MGP_C3HHeJ_P0062644 Adora3 protein_coding protein_coding MGP_C3HHeJ_T0062646.1 MGP_C3HHeJ_G0027423.1 mouse_genomes_project 3 106771816 106773489 + Adora3 protein_coding retained_intron MGP_C3HHeJ_T0059735.1 MGP_C3HHeJ_G0026787.1 mouse_genomes_project 3 12006865 12036164 + MGP_C3HHeJ_P0059735 E2f5 protein_coding protein_coding MGP_C3HHeJ_T0059736.1 MGP_C3HHeJ_G0026787.1 mouse_genomes_project 3 12006895 12036163 + MGP_C3HHeJ_P0059736 E2f5 protein_coding protein_coding MGP_C3HHeJ_T0060053.1 MGP_C3HHeJ_G0026857.1 mouse_genomes_project 3 30403957 30421498 - MGP_C3HHeJ_P0060053 Mrpl47 protein_coding protein_coding MGP_C3HHeJ_T0060054.1 MGP_C3HHeJ_G0026857.1 mouse_genomes_project 3 30406135 30416963 - Mrpl47 protein_coding processed_transcript MGP_C3HHeJ_T0060055.1 MGP_C3HHeJ_G0026857.1 mouse_genomes_project 3 30420451 30421954 - Mrpl47 protein_coding retained_intron MGP_C3HHeJ_T0004157.1 MGP_C3HHeJ_G0003654.1 mouse_genomes_project 3 35078403 35079543 + Gm12534 antisense antisense MGP_C3HHeJ_T0060062.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30506383 30643640 + MGP_C3HHeJ_P0060062 Usp13 protein_coding protein_coding MGP_C3HHeJ_T0060063.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30506408 30638757 + MGP_C3HHeJ_P0060063 Usp13 protein_coding protein_coding MGP_C3HHeJ_T0060064.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30506548 30619560 + MGP_C3HHeJ_P0060064 Usp13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060065.1 MGP_C3HHeJ_G0026859.1 mouse_genomes_project 3 30619529 30638765 + MGP_C3HHeJ_P0060065 Usp13 protein_coding protein_coding MGP_C3HHeJ_T0007590.1 MGP_C3HHeJ_G0006205.1 mouse_genomes_project 3 118599591 118600280 + Gm42891 lincRNA lincRNA MGP_C3HHeJ_T0099288.1 MGP_C3HHeJ_G0037482.1 mouse_genomes_project 3 96738802 96738999 + Gm22614 snRNA snRNA MGP_C3HHeJ_T0059673.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6170420 6269033 - MGP_C3HHeJ_P0059673 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059674.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6173453 6268788 - MGP_C3HHeJ_P0059674 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059675.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176576 6213422 - MGP_C3HHeJ_P0059675 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059676.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176634 6268749 - MGP_C3HHeJ_P0059676 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059677.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176730 6268733 - MGP_C3HHeJ_P0059677 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059678.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176742 6211717 - MGP_C3HHeJ_P0059678 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059679.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6176817 6268788 - MGP_C3HHeJ_P0059679 Tpd52 protein_coding protein_coding MGP_C3HHeJ_T0059680.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6193905 6268747 - Tpd52 protein_coding processed_transcript MGP_C3HHeJ_T0059681.1 MGP_C3HHeJ_G0026768.1 mouse_genomes_project 3 6193967 6268788 - MGP_C3HHeJ_P0059681 Tpd52 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004323.1 MGP_C3HHeJ_G0003767.1 mouse_genomes_project 3 147707564 147709586 - 9530034A14Rik antisense antisense MGP_C3HHeJ_T0004239.1 MGP_C3HHeJ_G0003714.1 mouse_genomes_project 3 99813934 99820344 - Gm43120 antisense antisense MGP_C3HHeJ_T0017753.1 MGP_C3HHeJ_G0015276.1 mouse_genomes_project 3 104598947 104604271 + Gm15471 processed_transcript retained_intron MGP_C3HHeJ_T0017754.1 MGP_C3HHeJ_G0015276.1 mouse_genomes_project 3 104598954 104604272 + Gm15471 processed_transcript antisense MGP_C3HHeJ_T0004191.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82150694 82220895 + Rbm46os antisense antisense MGP_C3HHeJ_T0004192.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82150694 82218977 + Rbm46os antisense antisense MGP_C3HHeJ_T0004193.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82150735 82219012 + Rbm46os antisense antisense MGP_C3HHeJ_T0004194.1 MGP_C3HHeJ_G0003683.1 mouse_genomes_project 3 82178942 82221540 + Rbm46os antisense antisense MGP_C3HHeJ_T0061059.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85389669 85502663 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061061.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85457473 85502419 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061062.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85459211 85502707 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061063.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85459319 85502696 + Sh3d19 protein_coding processed_transcript MGP_C3HHeJ_T0061064.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85490059 85549704 + MGP_C3HHeJ_P0061064 Sh3d19 protein_coding protein_coding MGP_C3HHeJ_T0061065.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85503558 85549700 + MGP_C3HHeJ_P0061065 Sh3d19 protein_coding protein_coding MGP_C3HHeJ_T0061066.1 MGP_C3HHeJ_G0027068.1 mouse_genomes_project 3 85542870 85548292 + Sh3d19 protein_coding retained_intron MGP_C3HHeJ_T0059960.1 MGP_C3HHeJ_G0026838.1 mouse_genomes_project 3 28223179 28250477 + MGP_C3HHeJ_P0059960 Lrriq4 protein_coding protein_coding MGP_C3HHeJ_T0059961.1 MGP_C3HHeJ_G0026838.1 mouse_genomes_project 3 28223988 28250345 + MGP_C3HHeJ_P0059961 Lrriq4 protein_coding protein_coding MGP_C3HHeJ_T0059962.1 MGP_C3HHeJ_G0026838.1 mouse_genomes_project 3 28226543 28250345 + MGP_C3HHeJ_P0059962 Lrriq4 protein_coding protein_coding MGP_C3HHeJ_T0059832.1 MGP_C3HHeJ_G0026814.1 mouse_genomes_project 3 17551785 17578886 - MGP_C3HHeJ_P0059832 Cpa3 protein_coding protein_coding MGP_C3HHeJ_T0059833.1 MGP_C3HHeJ_G0026814.1 mouse_genomes_project 3 17564989 17577452 - Cpa3 protein_coding processed_transcript MGP_C3HHeJ_T0060793.1 MGP_C3HHeJ_G0027005.1 mouse_genomes_project 3 67720386 67722736 - MGP_C3HHeJ_P0060793 Gm17641 protein_coding protein_coding MGP_C3HHeJ_T0017708.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31836381 31839076 + processed_transcript retained_intron MGP_C3HHeJ_T0017709.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31836549 32382660 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017710.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31836569 32420360 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017711.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31933837 32382735 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017712.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 31933950 32249719 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017713.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298197 32420184 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017714.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298250 32422325 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017715.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298257 32312662 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017716.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298261 32382698 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017717.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32298585 32298652 + processed_transcript misc_RNA MGP_C3HHeJ_T0017718.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32329193 32420324 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017719.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32380416 32422325 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017720.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382425 32420227 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017721.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382503 32425192 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017722.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382548 32425155 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017723.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32382755 32426893 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017724.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32400342 32420480 + processed_transcript sense_overlapping MGP_C3HHeJ_T0017725.1 MGP_C3HHeJ_G0015262.1 mouse_genomes_project 3 32409539 32422327 + processed_transcript sense_overlapping MGP_C3HHeJ_T0014096.1 MGP_C3HHeJ_G0012200.1 mouse_genomes_project 3 113471009 113471874 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063835.1 MGP_C3HHeJ_G0027666.1 mouse_genomes_project 3 148326241 148362569 + MGP_C3HHeJ_P0063835 Syde2 protein_coding protein_coding MGP_C3HHeJ_T0063836.1 MGP_C3HHeJ_G0027666.1 mouse_genomes_project 3 148327024 148362569 + MGP_C3HHeJ_P0063836 Syde2 protein_coding protein_coding MGP_C3HHeJ_T0063837.1 MGP_C3HHeJ_G0027666.1 mouse_genomes_project 3 148332715 148337386 + Syde2 protein_coding processed_transcript MGP_C3HHeJ_T0062133.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96116067 96119776 - MGP_C3HHeJ_P0062133 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062134.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96116069 96119802 - MGP_C3HHeJ_P0062134 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062135.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96116369 96119822 - MGP_C3HHeJ_P0062135 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062136.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96117075 96118817 - MGP_C3HHeJ_P0062136 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062137.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96118022 96119774 - MGP_C3HHeJ_P0062137 Ciart protein_coding protein_coding MGP_C3HHeJ_T0062138.1 MGP_C3HHeJ_G0027301.1 mouse_genomes_project 3 96118243 96119645 - MGP_C3HHeJ_P0062138 Ciart protein_coding protein_coding MGP_C3HHeJ_T0098435.1 MGP_C3HHeJ_G0036640.1 mouse_genomes_project 3 104662521 104663781 + Gm15472 sense_intronic sense_intronic MGP_C3HHeJ_T0014027.1 MGP_C3HHeJ_G0012131.1 mouse_genomes_project 3 94947444 94948273 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061544.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980339 88982869 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0061545.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980386 88985254 + MGP_C3HHeJ_P0061545 Pygo2 protein_coding protein_coding MGP_C3HHeJ_T0061546.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980549 88981295 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0061547.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980865 88982808 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0061548.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88980962 88985254 + MGP_C3HHeJ_P0061548 Pygo2 protein_coding protein_coding MGP_C3HHeJ_T0061549.1 MGP_C3HHeJ_G0027155.1 mouse_genomes_project 3 88981157 88983118 + Pygo2 protein_coding processed_transcript MGP_C3HHeJ_T0100568.1 MGP_C3HHeJ_G0038762.1 mouse_genomes_project 3 105015812 105015928 + Gm23077 snoRNA snoRNA MGP_C3HHeJ_T0007456.1 MGP_C3HHeJ_G0006101.1 mouse_genomes_project 3 50397934 50406499 - Gm30074 lincRNA lincRNA MGP_C3HHeJ_T0063207.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124597477 124627377 - MGP_C3HHeJ_P0063207 Myoz2 protein_coding protein_coding MGP_C3HHeJ_T0063208.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124597788 124627206 - MGP_C3HHeJ_P0063208 Myoz2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063209.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124597873 124627366 - Myoz2 protein_coding processed_transcript MGP_C3HHeJ_T0063210.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124604887 124627325 - Myoz2 protein_coding processed_transcript MGP_C3HHeJ_T0063211.1 MGP_C3HHeJ_G0027547.1 mouse_genomes_project 3 124614309 124627314 - Myoz2 protein_coding retained_intron MGP_C3HHeJ_T0061810.1 MGP_C3HHeJ_G0027235.1 mouse_genomes_project 3 92792279 92794601 - MGP_C3HHeJ_P0061810 Lce3a protein_coding protein_coding MGP_C3HHeJ_T0061246.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902116 87908491 + MGP_C3HHeJ_P0061246 Paqr6 protein_coding protein_coding MGP_C3HHeJ_T0061247.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902121 87910506 + MGP_C3HHeJ_P0061247 Paqr6 protein_coding protein_coding MGP_C3HHeJ_T0061248.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902123 87904637 + Paqr6 protein_coding processed_transcript MGP_C3HHeJ_T0061249.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87902125 87903335 + Paqr6 protein_coding retained_intron MGP_C3HHeJ_T0061250.1 MGP_C3HHeJ_G0027108.1 mouse_genomes_project 3 87904254 87910506 + Paqr6 protein_coding retained_intron MGP_C3HHeJ_T0013878.1 MGP_C3HHeJ_G0011982.1 mouse_genomes_project 3 47832421 47832956 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101946.1 MGP_C3HHeJ_G0039911.1 mouse_genomes_project 3 62679380 62680364 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004338.1 MGP_C3HHeJ_G0003779.1 mouse_genomes_project 3 160723143 160724740 + 1810013D15Rik antisense antisense MGP_C3HHeJ_T0004339.1 MGP_C3HHeJ_G0003779.1 mouse_genomes_project 3 160723405 160735630 + 1810013D15Rik antisense antisense MGP_C3HHeJ_T0101200.1 MGP_C3HHeJ_G0039337.1 mouse_genomes_project 3 124361771 124362065 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0014156.1 MGP_C3HHeJ_G0012260.1 mouse_genomes_project 3 135385552 135385827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060839.1 MGP_C3HHeJ_G0027015.1 mouse_genomes_project 3 68702607 68738653 - MGP_C3HHeJ_P0060839 Sptssb protein_coding protein_coding MGP_C3HHeJ_T0060840.1 MGP_C3HHeJ_G0027015.1 mouse_genomes_project 3 68703643 68738635 - MGP_C3HHeJ_P0060840 Sptssb protein_coding protein_coding MGP_C3HHeJ_T0013920.1 MGP_C3HHeJ_G0012024.1 mouse_genomes_project 3 59291627 59292197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061493.1 MGP_C3HHeJ_G0027145.1 mouse_genomes_project 3 88855974 88865054 - MGP_C3HHeJ_P0061493 Efna3 protein_coding protein_coding MGP_C3HHeJ_T0061494.1 MGP_C3HHeJ_G0027145.1 mouse_genomes_project 3 88857439 88864976 - MGP_C3HHeJ_P0061494 Efna3 protein_coding protein_coding MGP_C3HHeJ_T0061495.1 MGP_C3HHeJ_G0027145.1 mouse_genomes_project 3 88857934 88863720 - Efna3 protein_coding processed_transcript MGP_C3HHeJ_T0101413.1 MGP_C3HHeJ_G0039447.1 mouse_genomes_project 3 63577860 63578093 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013805.1 MGP_C3HHeJ_G0011909.1 mouse_genomes_project 3 18452801 18453222 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061259.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950327 87964945 - MGP_C3HHeJ_P0061259 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0061260.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950327 87964944 - MGP_C3HHeJ_P0061260 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0061261.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950328 87964976 - MGP_C3HHeJ_P0061261 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0061262.1 MGP_C3HHeJ_G0027111.1 mouse_genomes_project 3 87950328 87964949 - MGP_C3HHeJ_P0061262 Slc25a44 protein_coding protein_coding MGP_C3HHeJ_T0062034.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490303 95497288 + MGP_C3HHeJ_P0062034 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062035.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490596 95499007 + MGP_C3HHeJ_P0062035 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062036.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490759 95496181 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062037.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95490779 95496731 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062038.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95492757 95495958 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062039.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95493428 95496450 + MGP_C3HHeJ_P0062039 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062040.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95494199 95497363 + MGP_C3HHeJ_P0062040 Cers2 protein_coding protein_coding MGP_C3HHeJ_T0062041.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95495540 95498080 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0062042.1 MGP_C3HHeJ_G0027286.1 mouse_genomes_project 3 95496347 95497365 + Cers2 protein_coding retained_intron MGP_C3HHeJ_T0007624.1 MGP_C3HHeJ_G0006230.1 mouse_genomes_project 3 134231456 134234010 - lincRNA lincRNA MGP_C3HHeJ_T0062270.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97176141 97212806 - MGP_C3HHeJ_P0062270 Gpr89 protein_coding protein_coding MGP_C3HHeJ_T0062271.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97176451 97200821 - Gpr89 protein_coding processed_transcript MGP_C3HHeJ_T0062272.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97179346 97184066 - Gpr89 protein_coding retained_intron MGP_C3HHeJ_T0062273.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97188442 97206426 - Gpr89 protein_coding processed_transcript MGP_C3HHeJ_T0062274.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97190331 97205318 - Gpr89 protein_coding processed_transcript MGP_C3HHeJ_T0062275.1 MGP_C3HHeJ_G0027339.1 mouse_genomes_project 3 97190331 97212772 - MGP_C3HHeJ_P0062275 Gpr89 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007686.1 MGP_C3HHeJ_G0006282.1 mouse_genomes_project 3 153102223 153107725 + Gm43470 lincRNA lincRNA MGP_C3HHeJ_T0007687.1 MGP_C3HHeJ_G0006282.1 mouse_genomes_project 3 153102302 153125011 + Gm43470 lincRNA lincRNA MGP_C3HHeJ_T0062724.1 MGP_C3HHeJ_G0027446.1 mouse_genomes_project 3 108181353 108187207 - MGP_C3HHeJ_P0062724 Prok1 protein_coding protein_coding MGP_C3HHeJ_T0062725.1 MGP_C3HHeJ_G0027446.1 mouse_genomes_project 3 108181368 108185816 - Prok1 protein_coding retained_intron MGP_C3HHeJ_T0062726.1 MGP_C3HHeJ_G0027446.1 mouse_genomes_project 3 108183686 108188262 - MGP_C3HHeJ_P0062726 Prok1 protein_coding protein_coding MGP_C3HHeJ_T0007657.1 MGP_C3HHeJ_G0006259.1 mouse_genomes_project 3 145723860 145725329 - Gm43616 lincRNA lincRNA MGP_C3HHeJ_T0001363.1 MGP_C3HHeJ_G0001294.1 mouse_genomes_project 3 160777324 160781266 + TEC TEC MGP_C3HHeJ_T0059874.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656745 24719450 + MGP_C3HHeJ_P0059874 Nceh1 protein_coding protein_coding MGP_C3HHeJ_T0059875.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656784 24700820 + Nceh1 protein_coding retained_intron MGP_C3HHeJ_T0059876.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656784 24770089 + MGP_C3HHeJ_P0059876 Nceh1 protein_coding protein_coding MGP_C3HHeJ_T0059877.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24656784 24697172 + MGP_C3HHeJ_P0059877 Nceh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059878.1 MGP_C3HHeJ_G0026822.1 mouse_genomes_project 3 24662226 24714075 + Nceh1 protein_coding processed_transcript MGP_C3HHeJ_T0062193.1 MGP_C3HHeJ_G0027314.1 mouse_genomes_project 3 96470587 96471107 - MGP_C3HHeJ_P0062193 Hist2h2ac protein_coding protein_coding MGP_C3HHeJ_T0099244.1 MGP_C3HHeJ_G0037438.1 mouse_genomes_project 3 38884098 38884256 + Gm22043 snRNA snRNA MGP_C3HHeJ_T0062327.1 MGP_C3HHeJ_G0027351.1 mouse_genomes_project 3 98379713 98466657 + Notch2 protein_coding retained_intron MGP_C3HHeJ_T0062328.1 MGP_C3HHeJ_G0027351.1 mouse_genomes_project 3 98379724 98516126 + MGP_C3HHeJ_P0062328 Notch2 protein_coding protein_coding MGP_C3HHeJ_T0007564.1 MGP_C3HHeJ_G0006183.1 mouse_genomes_project 3 103432846 103434111 + Gm42682 lincRNA lincRNA MGP_C3HHeJ_T0004273.1 MGP_C3HHeJ_G0003729.1 mouse_genomes_project 3 109241535 109249612 - 1700010K24Rik antisense antisense MGP_C3HHeJ_T0061374.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88465512 88605208 + MGP_C3HHeJ_P0061374 Ash1l protein_coding protein_coding MGP_C3HHeJ_T0061376.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88483058 88605206 + MGP_C3HHeJ_P0061376 Ash1l protein_coding protein_coding MGP_C3HHeJ_T0061377.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88545363 88551730 + Ash1l protein_coding retained_intron MGP_C3HHeJ_T0061378.1 MGP_C3HHeJ_G0027127.1 mouse_genomes_project 3 88578296 88581190 + Ash1l protein_coding retained_intron MGP_C3HHeJ_T0001104.1 MGP_C3HHeJ_G0001038.1 mouse_genomes_project 3 30400337 30400650 - TEC TEC MGP_C3HHeJ_T0061466.1 MGP_C3HHeJ_G0027139.1 mouse_genomes_project 3 88765585 88769883 + MGP_C3HHeJ_P0061466 Muc1 protein_coding protein_coding MGP_C3HHeJ_T0061467.1 MGP_C3HHeJ_G0027139.1 mouse_genomes_project 3 88767758 88768602 + Muc1 protein_coding processed_transcript MGP_C3HHeJ_T0061468.1 MGP_C3HHeJ_G0027139.1 mouse_genomes_project 3 88767990 88769699 + Muc1 protein_coding processed_transcript MGP_C3HHeJ_T0001243.1 MGP_C3HHeJ_G0001175.1 mouse_genomes_project 3 105505404 105509692 - TEC TEC MGP_C3HHeJ_T0060176.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34452089 34522440 - MGP_C3HHeJ_P0060176 Trpc3 protein_coding protein_coding MGP_C3HHeJ_T0060177.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34452170 34452972 - Trpc3 protein_coding processed_transcript MGP_C3HHeJ_T0060178.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34452170 34452950 - Trpc3 protein_coding processed_transcript MGP_C3HHeJ_T0060179.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34470794 34473042 - Trpc3 protein_coding retained_intron MGP_C3HHeJ_T0060180.1 MGP_C3HHeJ_G0026878.1 mouse_genomes_project 3 34501392 34522440 - Trpc3 protein_coding retained_intron MGP_C3HHeJ_T0063388.1 MGP_C3HHeJ_G0027575.1 mouse_genomes_project 3 131614559 131630464 + MGP_C3HHeJ_P0063388 Cfi protein_coding protein_coding MGP_C3HHeJ_T0063389.1 MGP_C3HHeJ_G0027575.1 mouse_genomes_project 3 131615389 131656340 + MGP_C3HHeJ_P0063389 Cfi protein_coding protein_coding MGP_C3HHeJ_T0099280.1 MGP_C3HHeJ_G0037474.1 mouse_genomes_project 3 90171366 90171472 + Gm24593 snRNA snRNA MGP_C3HHeJ_T0001118.1 MGP_C3HHeJ_G0001052.1 mouse_genomes_project 3 35186491 35188955 + TEC TEC MGP_C3HHeJ_T0014035.1 MGP_C3HHeJ_G0012139.1 mouse_genomes_project 3 96212851 96213211 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063772.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146885477 146921868 - MGP_C3HHeJ_P0063772 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063773.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146886694 146899249 - MGP_C3HHeJ_P0063773 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063774.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146888710 146922081 - MGP_C3HHeJ_P0063774 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063775.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146890643 146922093 - MGP_C3HHeJ_P0063775 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063776.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146893145 146921963 - MGP_C3HHeJ_P0063776 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0063777.1 MGP_C3HHeJ_G0027651.1 mouse_genomes_project 3 146893777 146908415 - MGP_C3HHeJ_P0063777 Sh3glb1 protein_coding protein_coding MGP_C3HHeJ_T0061336.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237244 88264058 + MGP_C3HHeJ_P0061336 2810403A07Rik protein_coding protein_coding MGP_C3HHeJ_T0061337.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237255 88239503 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061338.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237268 88263988 + MGP_C3HHeJ_P0061338 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061339.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237268 88263696 + MGP_C3HHeJ_P0061339 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061340.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237274 88252785 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061341.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88237278 88263137 + MGP_C3HHeJ_P0061341 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061342.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88244771 88260042 + 2810403A07Rik protein_coding processed_transcript MGP_C3HHeJ_T0061343.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88250015 88252088 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061344.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88250811 88260121 + 2810403A07Rik protein_coding retained_intron MGP_C3HHeJ_T0061345.1 MGP_C3HHeJ_G0027121.1 mouse_genomes_project 3 88259913 88262219 + 2810403A07Rik protein_coding processed_transcript MGP_C3HHeJ_T0062746.1 MGP_C3HHeJ_G0027453.1 mouse_genomes_project 3 108558268 108569705 + MGP_C3HHeJ_P0062746 Alx3 protein_coding protein_coding MGP_C3HHeJ_T0007551.1 MGP_C3HHeJ_G0006172.1 mouse_genomes_project 3 99477544 99481152 - 5730437C11Rik lincRNA lincRNA MGP_C3HHeJ_T0007477.1 MGP_C3HHeJ_G0006116.1 mouse_genomes_project 3 59316194 59322550 + Gm38326 lincRNA lincRNA MGP_C3HHeJ_T0007402.1 MGP_C3HHeJ_G0006060.1 mouse_genomes_project 3 27345784 27461605 - Gm33206 lincRNA lincRNA MGP_C3HHeJ_T0014031.1 MGP_C3HHeJ_G0012135.1 mouse_genomes_project 3 95841167 95841919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010459.1 MGP_C3HHeJ_G0008592.1 mouse_genomes_project 3 117235654 117235708 + Mir669n miRNA miRNA MGP_C3HHeJ_T0063621.1 MGP_C3HHeJ_G0027619.1 mouse_genomes_project 3 139919467 139921510 + MGP_C3HHeJ_P0063621 protein_coding protein_coding MGP_C3HHeJ_T0013751.1 MGP_C3HHeJ_G0011855.1 mouse_genomes_project 3 5083555 5084140 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014061.1 MGP_C3HHeJ_G0012165.1 mouse_genomes_project 3 103401224 103401351 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062011.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95415616 95425530 - MGP_C3HHeJ_P0062011 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062012.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95415640 95425386 - MGP_C3HHeJ_P0062012 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062013.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95416170 95425473 - MGP_C3HHeJ_P0062013 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062014.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95417328 95425485 - MGP_C3HHeJ_P0062014 Bnipl protein_coding protein_coding MGP_C3HHeJ_T0062015.1 MGP_C3HHeJ_G0027282.1 mouse_genomes_project 3 95419483 95422916 - Bnipl protein_coding retained_intron MGP_C3HHeJ_T0001311.1 MGP_C3HHeJ_G0001242.1 mouse_genomes_project 3 132342485 132348680 + TEC TEC MGP_C3HHeJ_T0001116.1 MGP_C3HHeJ_G0001050.1 mouse_genomes_project 3 34355544 34358654 - TEC TEC MGP_C3HHeJ_T0062972.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240528 115443984 + MGP_C3HHeJ_P0062972 Col11a1 protein_coding protein_coding MGP_C3HHeJ_T0062973.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240528 115327469 + MGP_C3HHeJ_P0062973 Col11a1 protein_coding protein_coding MGP_C3HHeJ_T0062974.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240622 115243133 + Col11a1 protein_coding retained_intron MGP_C3HHeJ_T0062975.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240887 115442100 + MGP_C3HHeJ_P0062975 Col11a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062976.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115240887 115385886 + MGP_C3HHeJ_P0062976 Col11a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062977.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115276522 115277490 + Col11a1 protein_coding retained_intron MGP_C3HHeJ_T0062978.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115367505 115374322 + Col11a1 protein_coding retained_intron MGP_C3HHeJ_T0062979.1 MGP_C3HHeJ_G0027502.1 mouse_genomes_project 3 115385659 115442581 + MGP_C3HHeJ_P0062979 Col11a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013764.1 MGP_C3HHeJ_G0011868.1 mouse_genomes_project 3 7565066 7565198 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063886.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149012025 149055093 - MGP_C3HHeJ_P0063886 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063887.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149012943 149051903 - MGP_C3HHeJ_P0063887 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063888.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149012954 149052015 - MGP_C3HHeJ_P0063888 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063889.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149013039 149054976 - MGP_C3HHeJ_P0063889 Samd13 protein_coding protein_coding MGP_C3HHeJ_T0063892.1 MGP_C3HHeJ_G0027679.1 mouse_genomes_project 3 149049946 149054972 - Samd13 protein_coding retained_intron MGP_C3HHeJ_T0001176.1 MGP_C3HHeJ_G0001108.1 mouse_genomes_project 3 51378743 51382919 + TEC TEC MGP_C3HHeJ_T0060714.1 MGP_C3HHeJ_G0026988.1 mouse_genomes_project 3 64192000 64204969 - MGP_C3HHeJ_P0060714 Ssr3 protein_coding protein_coding MGP_C3HHeJ_T0060715.1 MGP_C3HHeJ_G0026988.1 mouse_genomes_project 3 64194025 64195727 - Ssr3 protein_coding retained_intron MGP_C3HHeJ_T0060716.1 MGP_C3HHeJ_G0026988.1 mouse_genomes_project 3 64194375 64204899 - MGP_C3HHeJ_P0060716 Ssr3 protein_coding protein_coding MGP_C3HHeJ_T0014083.1 MGP_C3HHeJ_G0012187.1 mouse_genomes_project 3 109230508 109231037 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014017.1 MGP_C3HHeJ_G0012121.1 mouse_genomes_project 3 92808826 92809218 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060779.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 66909515 67507186 + MGP_C3HHeJ_P0060779 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060780.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 66909515 67507186 + MGP_C3HHeJ_P0060780 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060781.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67342456 67507203 + MGP_C3HHeJ_P0060781 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060782.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67368920 67499388 + MGP_C3HHeJ_P0060782 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060783.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67369637 67507185 + MGP_C3HHeJ_P0060783 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060784.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67452985 67507186 + MGP_C3HHeJ_P0060784 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060785.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67464950 67507186 + MGP_C3HHeJ_P0060785 Schip1 protein_coding protein_coding MGP_C3HHeJ_T0060786.1 MGP_C3HHeJ_G0027003.1 mouse_genomes_project 3 67476971 67478960 + Schip1 protein_coding retained_intron MGP_C3HHeJ_T0010435.1 MGP_C3HHeJ_G0008568.1 mouse_genomes_project 3 79929651 79929762 - Gm25749 miRNA miRNA MGP_C3HHeJ_T0004138.1 MGP_C3HHeJ_G0003642.1 mouse_genomes_project 3 28265336 28271721 + Gm15462 antisense antisense MGP_C3HHeJ_T0064011.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984253 155053345 + MGP_C3HHeJ_P0064011 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064012.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984305 155020220 + Zzz3 protein_coding retained_intron MGP_C3HHeJ_T0064013.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984783 155056708 + MGP_C3HHeJ_P0064013 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064014.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984812 155041288 + Zzz3 protein_coding processed_transcript MGP_C3HHeJ_T0064015.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984859 155040986 + Zzz3 protein_coding processed_transcript MGP_C3HHeJ_T0064016.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154984911 155053423 + MGP_C3HHeJ_P0064016 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064017.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154985458 155053348 + MGP_C3HHeJ_P0064017 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064018.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 154985468 155056708 + MGP_C3HHeJ_P0064018 Zzz3 protein_coding protein_coding MGP_C3HHeJ_T0064019.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 155028243 155031255 + Zzz3 protein_coding retained_intron MGP_C3HHeJ_T0064020.1 MGP_C3HHeJ_G0027693.1 mouse_genomes_project 3 155051283 155052689 + Zzz3 protein_coding processed_transcript MGP_C3HHeJ_T0060037.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30250282 30290892 - MGP_C3HHeJ_P0060037 Gnb4 protein_coding protein_coding MGP_C3HHeJ_T0060038.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30253947 30290832 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0060039.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30253947 30290824 - MGP_C3HHeJ_P0060039 Gnb4 protein_coding protein_coding MGP_C3HHeJ_T0060040.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30255010 30290829 - MGP_C3HHeJ_P0060040 Gnb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060041.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30257677 30268152 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0060042.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30261107 30290786 - MGP_C3HHeJ_P0060042 Gnb4 protein_coding protein_coding MGP_C3HHeJ_T0060043.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30262183 30290832 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0060044.1 MGP_C3HHeJ_G0026855.1 mouse_genomes_project 3 30269808 30290836 - Gnb4 protein_coding retained_intron MGP_C3HHeJ_T0100574.1 MGP_C3HHeJ_G0038768.1 mouse_genomes_project 3 117324698 117324830 - Gm26344 snoRNA snoRNA MGP_C3HHeJ_T0063004.1 MGP_C3HHeJ_G0027509.1 mouse_genomes_project 3 117521266 117525120 - MGP_C3HHeJ_P0063004 Gpr88 protein_coding protein_coding MGP_C3HHeJ_T0063005.1 MGP_C3HHeJ_G0027509.1 mouse_genomes_project 3 117524175 117524706 - MGP_C3HHeJ_P0063005 Gpr88 protein_coding protein_coding MGP_C3HHeJ_T0063006.1 MGP_C3HHeJ_G0027509.1 mouse_genomes_project 3 117524288 117525080 - Gpr88 protein_coding processed_transcript MGP_C3HHeJ_T0062003.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95402866 95410793 + MGP_C3HHeJ_P0062003 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0062004.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95402944 95406765 + Cdc42se1 protein_coding retained_intron MGP_C3HHeJ_T0062005.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95403086 95408966 + MGP_C3HHeJ_P0062005 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0062007.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95406670 95408924 + MGP_C3HHeJ_P0062007 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0062008.1 MGP_C3HHeJ_G0027280.1 mouse_genomes_project 3 95406676 95409046 + MGP_C3HHeJ_P0062008 Cdc42se1 protein_coding protein_coding MGP_C3HHeJ_T0060748.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65798562 65808107 - MGP_C3HHeJ_P0060748 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0060749.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65798571 65808163 - MGP_C3HHeJ_P0060749 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0060750.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65798626 65808616 - MGP_C3HHeJ_P0060750 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0060751.1 MGP_C3HHeJ_G0026994.1 mouse_genomes_project 3 65800742 65805658 - MGP_C3HHeJ_P0060751 Shox2 protein_coding protein_coding MGP_C3HHeJ_T0011438.1 MGP_C3HHeJ_G0009571.1 mouse_genomes_project 3 28172893 28173305 - 1600017P15Rik misc_RNA misc_RNA MGP_C3HHeJ_T0059653.1 MGP_C3HHeJ_G0026761.1 mouse_genomes_project 3 3814127 3819646 - MGP_C3HHeJ_P0059653 1700008P02Rik protein_coding protein_coding MGP_C3HHeJ_T0062797.1 MGP_C3HHeJ_G0027465.1 mouse_genomes_project 3 109024772 109029040 - MGP_C3HHeJ_P0062797 Gstm4 protein_coding protein_coding MGP_C3HHeJ_T0060403.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49869468 49893746 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060404.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871270 49887954 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060405.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871271 49894615 + MGP_C3HHeJ_P0060405 Mgst2 protein_coding protein_coding MGP_C3HHeJ_T0060406.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871306 49894615 + MGP_C3HHeJ_P0060406 Mgst2 protein_coding protein_coding MGP_C3HHeJ_T0060407.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49871317 49894609 + MGP_C3HHeJ_P0060407 Mgst2 protein_coding protein_coding MGP_C3HHeJ_T0060408.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49881539 49894611 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060409.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49881991 49894458 + Mgst2 protein_coding processed_transcript MGP_C3HHeJ_T0060410.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49886025 49894614 + Mgst2 protein_coding retained_intron MGP_C3HHeJ_T0060411.1 MGP_C3HHeJ_G0026915.1 mouse_genomes_project 3 49893555 49894617 + Mgst2 protein_coding retained_intron MGP_C3HHeJ_T0061975.1 MGP_C3HHeJ_G0027274.1 mouse_genomes_project 3 95295709 95302962 + MGP_C3HHeJ_P0061975 protein_coding protein_coding MGP_C3HHeJ_T0099240.1 MGP_C3HHeJ_G0037434.1 mouse_genomes_project 3 21949379 21949486 + Gm24704 snRNA snRNA MGP_C3HHeJ_T0013807.1 MGP_C3HHeJ_G0011911.1 mouse_genomes_project 3 19368026 19368459 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004221.1 MGP_C3HHeJ_G0003703.1 mouse_genomes_project 3 95391543 95400793 + Gm16740 antisense antisense MGP_C3HHeJ_T0061752.1 MGP_C3HHeJ_G0027189.1 mouse_genomes_project 3 90226297 90230269 + MGP_C3HHeJ_P0061752 Gm42674 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060947.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81173228 81198226 + MGP_C3HHeJ_P0060947 Ctso protein_coding protein_coding MGP_C3HHeJ_T0060948.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81173250 81173952 + Ctso protein_coding retained_intron MGP_C3HHeJ_T0060949.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81173269 81183677 + Ctso protein_coding processed_transcript MGP_C3HHeJ_T0060950.1 MGP_C3HHeJ_G0027039.1 mouse_genomes_project 3 81191318 81195803 + Ctso protein_coding retained_intron MGP_C3HHeJ_T0013879.1 MGP_C3HHeJ_G0011983.1 mouse_genomes_project 3 47842311 47842731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064000.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933515 154982413 + MGP_C3HHeJ_P0064000 Usp33 protein_coding protein_coding MGP_C3HHeJ_T0064001.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933515 154982134 + MGP_C3HHeJ_P0064001 Usp33 protein_coding protein_coding MGP_C3HHeJ_T0064002.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933526 154982418 + MGP_C3HHeJ_P0064002 Usp33 protein_coding protein_coding MGP_C3HHeJ_T0064003.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933549 154960070 + MGP_C3HHeJ_P0064003 Usp33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064004.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154933552 154946491 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0064005.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154950058 154956656 + Usp33 protein_coding processed_transcript MGP_C3HHeJ_T0064006.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154952070 154955321 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0064007.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154954446 154961791 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0064008.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154956594 154963161 + MGP_C3HHeJ_P0064008 Usp33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064009.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154970233 154981308 + Usp33 protein_coding processed_transcript MGP_C3HHeJ_T0064010.1 MGP_C3HHeJ_G0027692.1 mouse_genomes_project 3 154970721 154972440 + Usp33 protein_coding retained_intron MGP_C3HHeJ_T0061568.1 MGP_C3HHeJ_G0027160.1 mouse_genomes_project 3 89308798 89327176 - MGP_C3HHeJ_P0061568 Chrnb2 protein_coding protein_coding MGP_C3HHeJ_T0061569.1 MGP_C3HHeJ_G0027160.1 mouse_genomes_project 3 89314998 89325969 - Chrnb2 protein_coding processed_transcript MGP_C3HHeJ_T0061570.1 MGP_C3HHeJ_G0027160.1 mouse_genomes_project 3 89319665 89328337 - MGP_C3HHeJ_P0061570 Chrnb2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063043.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117924579 117957510 - MGP_C3HHeJ_P0063043 Mfsd14a protein_coding protein_coding MGP_C3HHeJ_T0063044.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117926016 117929904 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063045.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117934760 117939198 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063047.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117941584 117957324 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063048.1 MGP_C3HHeJ_G0027516.1 mouse_genomes_project 3 117944344 117957443 - Mfsd14a protein_coding retained_intron MGP_C3HHeJ_T0063885.1 MGP_C3HHeJ_G0027678.1 mouse_genomes_project 3 149012023 149018173 - MGP_C3HHeJ_P0063885 4930503B20Rik protein_coding protein_coding MGP_C3HHeJ_T0063890.1 MGP_C3HHeJ_G0027678.1 mouse_genomes_project 3 149013108 149015162 - 4930503B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0063891.1 MGP_C3HHeJ_G0027678.1 mouse_genomes_project 3 149016421 149018171 - MGP_C3HHeJ_P0063891 4930503B20Rik protein_coding protein_coding MGP_C3HHeJ_T0004189.1 MGP_C3HHeJ_G0003681.1 mouse_genomes_project 3 79414983 79418084 - Gm37892 antisense antisense MGP_C3HHeJ_T0101963.1 MGP_C3HHeJ_G0039928.1 mouse_genomes_project 3 92940645 92940870 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014181.1 MGP_C3HHeJ_G0012285.1 mouse_genomes_project 3 140618603 140619270 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060089.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31536755 31569875 - MGP_C3HHeJ_P0060089 Ccdc39 protein_coding protein_coding MGP_C3HHeJ_T0060090.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31537444 31538942 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060091.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31543047 31569875 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060092.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31544595 31569639 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060093.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31549283 31551237 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0060094.1 MGP_C3HHeJ_G0026862.1 mouse_genomes_project 3 31563564 31569884 - Ccdc39 protein_coding retained_intron MGP_C3HHeJ_T0001203.1 MGP_C3HHeJ_G0001135.1 mouse_genomes_project 3 64914270 64915379 + TEC TEC MGP_C3HHeJ_T0062016.1 MGP_C3HHeJ_G0027283.1 mouse_genomes_project 3 95428010 95457834 - MGP_C3HHeJ_P0062016 Prune protein_coding protein_coding MGP_C3HHeJ_T0062017.1 MGP_C3HHeJ_G0027283.1 mouse_genomes_project 3 95439284 95443072 - Prune protein_coding retained_intron MGP_C3HHeJ_T0001317.1 MGP_C3HHeJ_G0001248.1 mouse_genomes_project 3 132853251 132855799 - TEC TEC MGP_C3HHeJ_T0061761.1 MGP_C3HHeJ_G0027193.1 mouse_genomes_project 3 90279503 90283870 + MGP_C3HHeJ_P0061761 S100a7a protein_coding protein_coding MGP_C3HHeJ_T0007503.1 MGP_C3HHeJ_G0006138.1 mouse_genomes_project 3 81039943 81043079 + A830029E22Rik lincRNA lincRNA MGP_C3HHeJ_T0014043.1 MGP_C3HHeJ_G0012147.1 mouse_genomes_project 3 99389690 99389876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001277.1 MGP_C3HHeJ_G0001209.1 mouse_genomes_project 3 124787296 124789893 - TEC TEC MGP_C3HHeJ_T0062716.1 MGP_C3HHeJ_G0027441.1 mouse_genomes_project 3 107969962 107974314 + MGP_C3HHeJ_P0062716 Kcna3 protein_coding protein_coding MGP_C3HHeJ_T0014037.1 MGP_C3HHeJ_G0012141.1 mouse_genomes_project 3 96666862 96669057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001349.1 MGP_C3HHeJ_G0001280.1 mouse_genomes_project 3 155586051 155587036 + TEC TEC MGP_C3HHeJ_T0013973.1 MGP_C3HHeJ_G0012077.1 mouse_genomes_project 3 76749428 76750699 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060901.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78802794 78815748 + Ppid protein_coding retained_intron MGP_C3HHeJ_T0060902.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78802817 78816122 + MGP_C3HHeJ_P0060902 Ppid protein_coding protein_coding MGP_C3HHeJ_T0060903.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78802940 78806760 + Ppid protein_coding processed_transcript MGP_C3HHeJ_T0060904.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78805141 78809213 + MGP_C3HHeJ_P0060904 Ppid protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060905.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78807608 78809640 + Ppid protein_coding retained_intron MGP_C3HHeJ_T0060906.1 MGP_C3HHeJ_G0027030.1 mouse_genomes_project 3 78810160 78813795 + Ppid protein_coding retained_intron MGP_C3HHeJ_T0099318.1 MGP_C3HHeJ_G0037512.1 mouse_genomes_project 3 154520538 154520600 - Gm25056 snRNA snRNA MGP_C3HHeJ_T0059698.1 MGP_C3HHeJ_G0026776.1 mouse_genomes_project 3 7535920 7540409 - MGP_C3HHeJ_P0059698 Fabp4 protein_coding protein_coding MGP_C3HHeJ_T0059699.1 MGP_C3HHeJ_G0026776.1 mouse_genomes_project 3 7536160 7540391 - Fabp4 protein_coding retained_intron MGP_C3HHeJ_T0063330.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129462917 129471474 + MGP_C3HHeJ_P0063330 Tifa protein_coding protein_coding MGP_C3HHeJ_T0063331.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463022 129509802 + Tifa protein_coding processed_transcript MGP_C3HHeJ_T0063332.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463024 129471043 + MGP_C3HHeJ_P0063332 Tifa protein_coding protein_coding MGP_C3HHeJ_T0063333.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463752 129471043 + MGP_C3HHeJ_P0063333 Tifa protein_coding protein_coding MGP_C3HHeJ_T0063334.1 MGP_C3HHeJ_G0027565.1 mouse_genomes_project 3 129463901 129471474 + MGP_C3HHeJ_P0063334 Tifa protein_coding protein_coding MGP_C3HHeJ_T0001197.1 MGP_C3HHeJ_G0001129.1 mouse_genomes_project 3 59107717 59111082 + TEC TEC MGP_C3HHeJ_T0007485.1 MGP_C3HHeJ_G0006124.1 mouse_genomes_project 3 69685290 69725477 - Gm6634 lincRNA lincRNA MGP_C3HHeJ_T0063382.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131602656 131609198 - MGP_C3HHeJ_P0063382 Gar1 protein_coding protein_coding MGP_C3HHeJ_T0063383.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131602660 131607169 - MGP_C3HHeJ_P0063383 Gar1 protein_coding protein_coding MGP_C3HHeJ_T0063384.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131602663 131603418 - Gar1 protein_coding retained_intron MGP_C3HHeJ_T0063385.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131603292 131605036 - Gar1 protein_coding retained_intron MGP_C3HHeJ_T0063386.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131603311 131609162 - Gar1 protein_coding processed_transcript MGP_C3HHeJ_T0063387.1 MGP_C3HHeJ_G0027574.1 mouse_genomes_project 3 131604592 131608735 - MGP_C3HHeJ_P0063387 Gar1 protein_coding protein_coding MGP_C3HHeJ_T0001310.1 MGP_C3HHeJ_G0001241.1 mouse_genomes_project 3 131307589 131309260 + TEC TEC MGP_C3HHeJ_T0060580.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56945783 56979045 + MGP_C3HHeJ_P0060580 Eif2a protein_coding protein_coding MGP_C3HHeJ_T0060581.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946004 56967613 + Eif2a protein_coding retained_intron MGP_C3HHeJ_T0060582.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946005 56977186 + MGP_C3HHeJ_P0060582 Eif2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060583.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946018 56979045 + MGP_C3HHeJ_P0060583 Eif2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060584.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56946265 56967378 + MGP_C3HHeJ_P0060584 Eif2a protein_coding protein_coding MGP_C3HHeJ_T0060585.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56964901 56967613 + Eif2a protein_coding retained_intron MGP_C3HHeJ_T0060586.1 MGP_C3HHeJ_G0026952.1 mouse_genomes_project 3 56966015 56972230 + Eif2a protein_coding retained_intron MGP_C3HHeJ_T0013931.1 MGP_C3HHeJ_G0012035.1 mouse_genomes_project 3 64794220 64794470 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099271.1 MGP_C3HHeJ_G0037465.1 mouse_genomes_project 3 85781526 85781695 + Gm23850 snRNA snRNA MGP_C3HHeJ_T0059959.1 MGP_C3HHeJ_G0026837.1 mouse_genomes_project 3 28202809 28226527 - MGP_C3HHeJ_P0059959 Lrrc34 protein_coding protein_coding MGP_C3HHeJ_T0010427.1 MGP_C3HHeJ_G0008560.1 mouse_genomes_project 3 36451776 36451882 - Gm24462 miRNA miRNA MGP_C3HHeJ_T0061806.1 MGP_C3HHeJ_G0027231.1 mouse_genomes_project 3 92666745 92668346 - MGP_C3HHeJ_P0061806 Lce1k protein_coding protein_coding MGP_C3HHeJ_T0007569.1 MGP_C3HHeJ_G0006188.1 mouse_genomes_project 3 106682255 106684092 + Gm5547 lincRNA lincRNA MGP_C3HHeJ_T0007570.1 MGP_C3HHeJ_G0006188.1 mouse_genomes_project 3 106682282 106684085 + Gm5547 lincRNA lincRNA MGP_C3HHeJ_T0007571.1 MGP_C3HHeJ_G0006188.1 mouse_genomes_project 3 106683344 106684093 + Gm5547 lincRNA lincRNA MGP_C3HHeJ_T0063485.1 MGP_C3HHeJ_G0027596.1 mouse_genomes_project 3 134892546 134915926 + MGP_C3HHeJ_P0063485 Ints12 protein_coding protein_coding MGP_C3HHeJ_T0063486.1 MGP_C3HHeJ_G0027596.1 mouse_genomes_project 3 134892644 134902801 + Ints12 protein_coding retained_intron MGP_C3HHeJ_T0063487.1 MGP_C3HHeJ_G0027596.1 mouse_genomes_project 3 134901093 134912023 + Ints12 protein_coding processed_transcript MGP_C3HHeJ_T0059952.1 MGP_C3HHeJ_G0026835.1 mouse_genomes_project 3 28174622 28177481 - MGP_C3HHeJ_P0059952 Actrt3 protein_coding protein_coding MGP_C3HHeJ_T0007390.1 MGP_C3HHeJ_G0006049.1 mouse_genomes_project 3 17216387 17217470 + 4632415L05Rik lincRNA lincRNA MGP_C3HHeJ_T0007391.1 MGP_C3HHeJ_G0006049.1 mouse_genomes_project 3 17216399 17220328 + 4632415L05Rik lincRNA lincRNA MGP_C3HHeJ_T0061147.1 MGP_C3HHeJ_G0027087.1 mouse_genomes_project 3 87351878 87379011 - MGP_C3HHeJ_P0061147 Prcc protein_coding protein_coding MGP_C3HHeJ_T0098410.1 MGP_C3HHeJ_G0036615.1 mouse_genomes_project 3 94478200 94492305 + sense_intronic sense_intronic MGP_C3HHeJ_T0004296.1 MGP_C3HHeJ_G0003748.1 mouse_genomes_project 3 129514604 129516347 + Gm43653 antisense antisense MGP_C3HHeJ_T0098120.1 MGP_C3HHeJ_G0036332.1 mouse_genomes_project 3 22970246 22970354 + Gm22832 rRNA rRNA MGP_C3HHeJ_T0064175.1 MGP_C3HHeJ_G0027718.1 mouse_genomes_project 3 162289183 162324993 + MGP_C3HHeJ_P0064175 Depdc1a protein_coding protein_coding MGP_C3HHeJ_T0064176.1 MGP_C3HHeJ_G0027718.1 mouse_genomes_project 3 162289201 162324614 + MGP_C3HHeJ_P0064176 Depdc1a protein_coding protein_coding MGP_C3HHeJ_T0064177.1 MGP_C3HHeJ_G0027718.1 mouse_genomes_project 3 162289208 162324497 + MGP_C3HHeJ_P0064177 Depdc1a protein_coding protein_coding MGP_C3HHeJ_T0060627.1 MGP_C3HHeJ_G0026965.1 mouse_genomes_project 3 58319838 58337280 + protein_coding unprocessed_pseudogene MGP_C3HHeJ_T0001237.1 MGP_C3HHeJ_G0001169.1 mouse_genomes_project 3 97601151 97604435 + TEC TEC MGP_C3HHeJ_T0007637.1 MGP_C3HHeJ_G0006242.1 mouse_genomes_project 3 139265051 139275884 + Gm567 lincRNA lincRNA MGP_C3HHeJ_T0062679.1 MGP_C3HHeJ_G0027434.1 mouse_genomes_project 3 107310768 107329535 - MGP_C3HHeJ_P0062679 Chil6 protein_coding protein_coding MGP_C3HHeJ_T0007705.1 MGP_C3HHeJ_G0006293.1 mouse_genomes_project 3 160500722 160506768 - Gm33466 lincRNA lincRNA MGP_C3HHeJ_T0100532.1 MGP_C3HHeJ_G0038726.1 mouse_genomes_project 3 39330163 39330288 - Gm25487 snoRNA snoRNA MGP_C3HHeJ_T0099248.1 MGP_C3HHeJ_G0037442.1 mouse_genomes_project 3 47137609 47137774 + Gm23511 snRNA snRNA MGP_C3HHeJ_T0062331.1 MGP_C3HHeJ_G0027353.1 mouse_genomes_project 3 98600782 98615381 + MGP_C3HHeJ_P0062331 Reg4 protein_coding protein_coding MGP_C3HHeJ_T0007452.1 MGP_C3HHeJ_G0006098.1 mouse_genomes_project 3 49230724 49247651 - Gm29230 lincRNA lincRNA MGP_C3HHeJ_T0098445.1 MGP_C3HHeJ_G0036650.1 mouse_genomes_project 3 104983044 104986321 - Gm43259 sense_intronic sense_intronic MGP_C3HHeJ_T0013778.1 MGP_C3HHeJ_G0011882.1 mouse_genomes_project 3 11741672 11741812 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063644.1 MGP_C3HHeJ_G0027626.1 mouse_genomes_project 3 140211430 140227076 + MGP_C3HHeJ_P0063644 Adh7 protein_coding protein_coding MGP_C3HHeJ_T0063645.1 MGP_C3HHeJ_G0027626.1 mouse_genomes_project 3 140215134 140216751 + Adh7 protein_coding retained_intron MGP_C3HHeJ_T0063646.1 MGP_C3HHeJ_G0027626.1 mouse_genomes_project 3 140221712 140225103 + Adh7 protein_coding processed_transcript MGP_C3HHeJ_T0061764.1 MGP_C3HHeJ_G0027195.1 mouse_genomes_project 3 90320127 90323199 - MGP_C3HHeJ_P0061764 S100a9 protein_coding protein_coding MGP_C3HHeJ_T0061765.1 MGP_C3HHeJ_G0027195.1 mouse_genomes_project 3 90320127 90323209 - MGP_C3HHeJ_P0061765 S100a9 protein_coding protein_coding MGP_C3HHeJ_T0014042.1 MGP_C3HHeJ_G0012146.1 mouse_genomes_project 3 98627116 98627605 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100583.1 MGP_C3HHeJ_G0038777.1 mouse_genomes_project 3 134593046 134593157 - Gm22322 snoRNA snoRNA MGP_C3HHeJ_T0007699.1 MGP_C3HHeJ_G0006290.1 mouse_genomes_project 3 158697941 158731147 + 9330178D15Rik lincRNA lincRNA MGP_C3HHeJ_T0099284.1 MGP_C3HHeJ_G0037478.1 mouse_genomes_project 3 96025551 96025737 - Gm26361 snRNA snRNA MGP_C3HHeJ_T0060308.1 MGP_C3HHeJ_G0026900.1 mouse_genomes_project 3 38959867 38977239 - MGP_C3HHeJ_P0060308 Pgrmc2 protein_coding protein_coding MGP_C3HHeJ_T0060309.1 MGP_C3HHeJ_G0026900.1 mouse_genomes_project 3 38962061 38964212 - Pgrmc2 protein_coding retained_intron MGP_C3HHeJ_T0007505.1 MGP_C3HHeJ_G0006140.1 mouse_genomes_project 3 82057285 82075659 - Gm43348 lincRNA lincRNA MGP_C3HHeJ_T0007502.1 MGP_C3HHeJ_G0006137.1 mouse_genomes_project 3 80287259 80288070 + Gm42476 lincRNA lincRNA MGP_C3HHeJ_T0001171.1 MGP_C3HHeJ_G0001103.1 mouse_genomes_project 3 50280373 50287330 - TEC TEC MGP_C3HHeJ_T0010453.1 MGP_C3HHeJ_G0008586.1 mouse_genomes_project 3 96470727 96470868 + Gm44492 miRNA miRNA MGP_C3HHeJ_T0062857.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109431310 109452661 - MGP_C3HHeJ_P0062857 Sars protein_coding protein_coding MGP_C3HHeJ_T0062858.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109433057 109452632 - MGP_C3HHeJ_P0062858 Sars protein_coding protein_coding MGP_C3HHeJ_T0062859.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109434676 109452606 - MGP_C3HHeJ_P0062859 Sars protein_coding protein_coding MGP_C3HHeJ_T0062860.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109435795 109452672 - MGP_C3HHeJ_P0062860 Sars protein_coding protein_coding MGP_C3HHeJ_T0062861.1 MGP_C3HHeJ_G0027479.1 mouse_genomes_project 3 109440828 109452619 - Sars protein_coding retained_intron MGP_C3HHeJ_T0004313.1 MGP_C3HHeJ_G0003760.1 mouse_genomes_project 3 139868082 139870285 - Gm43087 antisense antisense MGP_C3HHeJ_T0001204.1 MGP_C3HHeJ_G0001136.1 mouse_genomes_project 3 66306159 66308000 + TEC TEC MGP_C3HHeJ_T0063729.1 MGP_C3HHeJ_G0027643.1 mouse_genomes_project 3 144687200 144724973 + MGP_C3HHeJ_P0063729 Gbp2b protein_coding protein_coding MGP_C3HHeJ_T0007565.1 MGP_C3HHeJ_G0006184.1 mouse_genomes_project 3 103818060 103819374 + Gm43062 lincRNA lincRNA MGP_C3HHeJ_T0011454.1 MGP_C3HHeJ_G0009587.1 mouse_genomes_project 3 122845483 122845751 + Gm26027 misc_RNA misc_RNA MGP_C3HHeJ_T0004242.1 MGP_C3HHeJ_G0003716.1 mouse_genomes_project 3 102095446 102096485 - Gm42538 antisense antisense MGP_C3HHeJ_T0004243.1 MGP_C3HHeJ_G0003716.1 mouse_genomes_project 3 102096105 102097776 - Gm42538 antisense antisense MGP_C3HHeJ_T0060705.1 MGP_C3HHeJ_G0026985.1 mouse_genomes_project 3 62905899 62937892 - MGP_C3HHeJ_P0060705 Vmn2r3 protein_coding protein_coding MGP_C3HHeJ_T0060706.1 MGP_C3HHeJ_G0026985.1 mouse_genomes_project 3 62906063 62937970 - MGP_C3HHeJ_P0060706 Vmn2r3 protein_coding protein_coding MGP_C3HHeJ_T0013739.1 MGP_C3HHeJ_G0011843.1 mouse_genomes_project 3 941281 942055 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100524.1 MGP_C3HHeJ_G0038718.1 mouse_genomes_project 3 19770406 19770535 - Gm26354 snoRNA snoRNA MGP_C3HHeJ_T0007566.1 MGP_C3HHeJ_G0006185.1 mouse_genomes_project 3 105168319 105184298 - Gm5546 lincRNA lincRNA MGP_C3HHeJ_T0061824.1 MGP_C3HHeJ_G0027244.1 mouse_genomes_project 3 93170501 93175018 + Flg protein_coding TEC MGP_C3HHeJ_T0061825.1 MGP_C3HHeJ_G0027244.1 mouse_genomes_project 3 93170519 93177283 + MGP_C3HHeJ_P0061825 Flg protein_coding protein_coding MGP_C3HHeJ_T0061826.1 MGP_C3HHeJ_G0027244.1 mouse_genomes_project 3 93174540 93177283 + MGP_C3HHeJ_P0061826 Flg protein_coding protein_coding MGP_C3HHeJ_T0060994.1 MGP_C3HHeJ_G0027054.1 mouse_genomes_project 3 83148213 83153709 - MGP_C3HHeJ_P0060994 Tlr2 protein_coding protein_coding MGP_C3HHeJ_T0007410.1 MGP_C3HHeJ_G0006067.1 mouse_genomes_project 3 32156499 32158167 + Gm43208 lincRNA lincRNA MGP_C3HHeJ_T0001168.1 MGP_C3HHeJ_G0001100.1 mouse_genomes_project 3 50209478 50211695 - TEC TEC MGP_C3HHeJ_T0062777.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108902538 108908020 - MGP_C3HHeJ_P0062777 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062778.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108902911 108907870 - MGP_C3HHeJ_P0062778 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062779.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108903014 108907817 - MGP_C3HHeJ_P0062779 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062780.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108905267 108907782 - MGP_C3HHeJ_P0062780 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0062781.1 MGP_C3HHeJ_G0027460.1 mouse_genomes_project 3 108905336 108907813 - MGP_C3HHeJ_P0062781 Gstm7 protein_coding protein_coding MGP_C3HHeJ_T0063823.1 MGP_C3HHeJ_G0027663.1 mouse_genomes_project 3 148084149 148223675 + MGP_C3HHeJ_P0063823 Ddah1 protein_coding protein_coding MGP_C3HHeJ_T0063824.1 MGP_C3HHeJ_G0027663.1 mouse_genomes_project 3 148140047 148218783 + Ddah1 protein_coding processed_transcript MGP_C3HHeJ_T0013895.1 MGP_C3HHeJ_G0011999.1 mouse_genomes_project 3 52331134 52331542 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063629.1 MGP_C3HHeJ_G0027622.1 mouse_genomes_project 3 140061720 140078212 + MGP_C3HHeJ_P0063629 1110002E22Rik protein_coding protein_coding MGP_C3HHeJ_T0063630.1 MGP_C3HHeJ_G0027622.1 mouse_genomes_project 3 140068292 140074066 + 1110002E22Rik protein_coding processed_transcript MGP_C3HHeJ_T0062422.1 MGP_C3HHeJ_G0027380.1 mouse_genomes_project 3 102703937 102708587 + MGP_C3HHeJ_P0062422 Nhlh2 protein_coding protein_coding MGP_C3HHeJ_T0062423.1 MGP_C3HHeJ_G0027380.1 mouse_genomes_project 3 102704007 102709362 + MGP_C3HHeJ_P0062423 Nhlh2 protein_coding protein_coding MGP_C3HHeJ_T0062424.1 MGP_C3HHeJ_G0027380.1 mouse_genomes_project 3 102704016 102708367 + MGP_C3HHeJ_P0062424 Nhlh2 protein_coding protein_coding MGP_C3HHeJ_T0063314.1 MGP_C3HHeJ_G0027561.1 mouse_genomes_project 3 129205029 129221233 - MGP_C3HHeJ_P0063314 protein_coding protein_coding MGP_C3HHeJ_T0063315.1 MGP_C3HHeJ_G0027561.1 mouse_genomes_project 3 129215120 129221231 - MGP_C3HHeJ_P0063315 protein_coding protein_coding MGP_C3HHeJ_T0004173.1 MGP_C3HHeJ_G0003668.1 mouse_genomes_project 3 54240627 54283197 + Gm43376 antisense antisense MGP_C3HHeJ_T0004174.1 MGP_C3HHeJ_G0003668.1 mouse_genomes_project 3 54240698 54242585 + Gm43376 antisense antisense MGP_C3HHeJ_T0013765.1 MGP_C3HHeJ_G0011869.1 mouse_genomes_project 3 7646224 7646403 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014123.1 MGP_C3HHeJ_G0012227.1 mouse_genomes_project 3 123394147 123394524 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007558.1 MGP_C3HHeJ_G0006179.1 mouse_genomes_project 3 102963638 102964234 + Gm43241 lincRNA lincRNA MGP_C3HHeJ_T0061454.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749819 88763080 + MGP_C3HHeJ_P0061454 Thbs3 protein_coding protein_coding MGP_C3HHeJ_T0061455.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749844 88752707 + MGP_C3HHeJ_P0061455 Thbs3 protein_coding protein_coding MGP_C3HHeJ_T0061456.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749866 88763080 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061457.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88749872 88763047 + MGP_C3HHeJ_P0061457 Thbs3 protein_coding protein_coding MGP_C3HHeJ_T0061458.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88752040 88753711 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061459.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88755575 88759409 + Thbs3 protein_coding processed_transcript MGP_C3HHeJ_T0061461.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88760373 88761795 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061462.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88760522 88762946 + MGP_C3HHeJ_P0061462 Thbs3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061463.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88760563 88761663 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061464.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88761414 88762806 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0061465.1 MGP_C3HHeJ_G0027138.1 mouse_genomes_project 3 88762492 88763029 + Thbs3 protein_coding retained_intron MGP_C3HHeJ_T0063530.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241115 137267625 + MGP_C3HHeJ_P0063530 Slc9b1 protein_coding protein_coding MGP_C3HHeJ_T0063531.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241120 137293493 + MGP_C3HHeJ_P0063531 Slc9b1 protein_coding protein_coding MGP_C3HHeJ_T0063532.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241132 137252187 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063533.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241132 137252426 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063534.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241144 137288748 + Slc9b1 protein_coding processed_transcript MGP_C3HHeJ_T0063535.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137241416 137270347 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063536.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137268567 137270071 + Slc9b1 protein_coding retained_intron MGP_C3HHeJ_T0063537.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137278603 137293490 + MGP_C3HHeJ_P0063537 Slc9b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063538.1 MGP_C3HHeJ_G0027605.1 mouse_genomes_project 3 137289669 137293490 + Slc9b1 protein_coding processed_transcript MGP_C3HHeJ_T0061491.1 MGP_C3HHeJ_G0027144.1 mouse_genomes_project 3 88811523 88819416 - MGP_C3HHeJ_P0061491 Efna1 protein_coding protein_coding MGP_C3HHeJ_T0061492.1 MGP_C3HHeJ_G0027144.1 mouse_genomes_project 3 88812275 88819317 - MGP_C3HHeJ_P0061492 Efna1 protein_coding protein_coding MGP_C3HHeJ_T0014213.1 MGP_C3HHeJ_G0012317.1 mouse_genomes_project 3 155494668 155494835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063521.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137172595 137196878 + MGP_C3HHeJ_P0063521 Bdh2 protein_coding protein_coding MGP_C3HHeJ_T0063522.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137172635 137196878 + MGP_C3HHeJ_P0063522 Bdh2 protein_coding protein_coding MGP_C3HHeJ_T0063523.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137172657 137175791 + Bdh2 protein_coding retained_intron MGP_C3HHeJ_T0063524.1 MGP_C3HHeJ_G0027603.1 mouse_genomes_project 3 137179974 137196875 + Bdh2 protein_coding processed_transcript MGP_C3HHeJ_T0001356.1 MGP_C3HHeJ_G0001287.1 mouse_genomes_project 3 159401787 159404355 + TEC TEC MGP_C3HHeJ_T0013784.1 MGP_C3HHeJ_G0011888.1 mouse_genomes_project 3 12388127 12389111 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059759.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456221 13490507 + MGP_C3HHeJ_P0059759 Ythdf3 protein_coding protein_coding MGP_C3HHeJ_T0059760.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456245 13477417 + Ythdf3 protein_coding processed_transcript MGP_C3HHeJ_T0059761.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456245 13488475 + MGP_C3HHeJ_P0059761 Ythdf3 protein_coding protein_coding MGP_C3HHeJ_T0059762.1 MGP_C3HHeJ_G0026798.1 mouse_genomes_project 3 13456245 13490325 + MGP_C3HHeJ_P0059762 Ythdf3 protein_coding protein_coding MGP_C3HHeJ_T0013970.1 MGP_C3HHeJ_G0012074.1 mouse_genomes_project 3 75179717 75180508 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014075.1 MGP_C3HHeJ_G0012179.1 mouse_genomes_project 3 106972277 106972593 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001322.1 MGP_C3HHeJ_G0001253.1 mouse_genomes_project 3 134855434 134857208 - TEC TEC MGP_C3HHeJ_T0007587.1 MGP_C3HHeJ_G0006202.1 mouse_genomes_project 3 117772608 117777021 + Gm26530 lincRNA lincRNA MGP_C3HHeJ_T0063565.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137502858 137613324 - MGP_C3HHeJ_P0063565 Nfkb1 protein_coding protein_coding MGP_C3HHeJ_T0063566.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137502860 137527840 - MGP_C3HHeJ_P0063566 Nfkb1 protein_coding protein_coding MGP_C3HHeJ_T0063567.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137502948 137523387 - MGP_C3HHeJ_P0063567 Nfkb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063568.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137503085 137528053 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063569.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137503482 137589734 - MGP_C3HHeJ_P0063569 Nfkb1 protein_coding protein_coding MGP_C3HHeJ_T0063570.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137503485 137591274 - MGP_C3HHeJ_P0063570 Nfkb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063571.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137509994 137513663 - Nfkb1 protein_coding processed_transcript MGP_C3HHeJ_T0063572.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137521449 137523450 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063573.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137530166 137613325 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063574.1 MGP_C3HHeJ_G0027609.1 mouse_genomes_project 3 137538662 137542789 - Nfkb1 protein_coding retained_intron MGP_C3HHeJ_T0063046.1 MGP_C3HHeJ_G0027517.1 mouse_genomes_project 3 117935362 117975989 - MGP_C3HHeJ_P0063046 Gm43191 protein_coding protein_coding MGP_C3HHeJ_T0098423.1 MGP_C3HHeJ_G0036628.1 mouse_genomes_project 3 102077582 102079770 + Gm42939 sense_intronic sense_intronic MGP_C3HHeJ_T0001158.1 MGP_C3HHeJ_G0001092.1 mouse_genomes_project 3 49882883 49883984 + TEC TEC MGP_C3HHeJ_T0007547.1 MGP_C3HHeJ_G0006168.1 mouse_genomes_project 3 96660949 96661518 + Gm26654 lincRNA lincRNA MGP_C3HHeJ_T0061802.1 MGP_C3HHeJ_G0027227.1 mouse_genomes_project 3 92575235 92576931 - MGP_C3HHeJ_P0061802 Lce1f protein_coding protein_coding MGP_C3HHeJ_T0062522.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104517382 104529360 - Olfml3 protein_coding processed_transcript MGP_C3HHeJ_T0062523.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104526797 104533127 - MGP_C3HHeJ_P0062523 Olfml3 protein_coding protein_coding MGP_C3HHeJ_T0062524.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104526813 104527687 - MGP_C3HHeJ_P0062524 Olfml3 protein_coding protein_coding MGP_C3HHeJ_T0062525.1 MGP_C3HHeJ_G0027397.1 mouse_genomes_project 3 104528830 104533094 - Olfml3 protein_coding retained_intron MGP_C3HHeJ_T0007479.1 MGP_C3HHeJ_G0006118.1 mouse_genomes_project 3 62064361 62067129 - lincRNA lincRNA MGP_C3HHeJ_T0098124.1 MGP_C3HHeJ_G0036336.1 mouse_genomes_project 3 88420994 88421113 + n-R5s197 rRNA rRNA MGP_C3HHeJ_T0100558.1 MGP_C3HHeJ_G0038752.1 mouse_genomes_project 3 88574395 88574525 - Gm24403 snoRNA snoRNA MGP_C3HHeJ_T0059711.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7677807 7682582 - protein_coding retained_intron MGP_C3HHeJ_T0059712.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7678534 7686883 - MGP_C3HHeJ_P0059712 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059713.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7682512 7683983 - protein_coding retained_intron MGP_C3HHeJ_T0059714.1 MGP_C3HHeJ_G0026781.1 mouse_genomes_project 3 7686056 7686882 - protein_coding processed_transcript MGP_C3HHeJ_T0062652.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106815183 106837214 - MGP_C3HHeJ_P0062652 Atp5f1 protein_coding protein_coding MGP_C3HHeJ_T0062653.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106815187 106836391 - MGP_C3HHeJ_P0062653 Atp5f1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062654.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106815383 106831297 - MGP_C3HHeJ_P0062654 Atp5f1 protein_coding protein_coding MGP_C3HHeJ_T0062655.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106830785 106836379 - Atp5f1 protein_coding retained_intron MGP_C3HHeJ_T0062656.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106830942 106833122 - Atp5f1 protein_coding retained_intron MGP_C3HHeJ_T0062657.1 MGP_C3HHeJ_G0027426.1 mouse_genomes_project 3 106835705 106836361 - Atp5f1 protein_coding retained_intron MGP_C3HHeJ_T0060496.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386985 53392615 - MGP_C3HHeJ_P0060496 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060497.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386991 53397003 - MGP_C3HHeJ_P0060497 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060498.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386993 53396990 - MGP_C3HHeJ_P0060498 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060499.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53386994 53397449 - MGP_C3HHeJ_P0060499 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060500.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53392562 53397430 - MGP_C3HHeJ_P0060500 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0060501.1 MGP_C3HHeJ_G0026935.1 mouse_genomes_project 3 53392956 53396985 - MGP_C3HHeJ_P0060501 Ccna1 protein_coding protein_coding MGP_C3HHeJ_T0014044.1 MGP_C3HHeJ_G0012148.1 mouse_genomes_project 3 99389857 99390112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010412.1 MGP_C3HHeJ_G0008545.1 mouse_genomes_project 3 653919 654009 + Gm23237 miRNA miRNA MGP_C3HHeJ_T0007651.1 MGP_C3HHeJ_G0006254.1 mouse_genomes_project 3 145232200 145285982 + Gm43614 lincRNA lincRNA MGP_C3HHeJ_T0014137.1 MGP_C3HHeJ_G0012241.1 mouse_genomes_project 3 127873878 127875124 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001192.1 MGP_C3HHeJ_G0001124.1 mouse_genomes_project 3 56946892 56948087 + TEC TEC MGP_C3HHeJ_T0060807.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67848755 67879808 + MGP_C3HHeJ_P0060807 Smc4 protein_coding protein_coding MGP_C3HHeJ_T0060808.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67848987 67862494 + MGP_C3HHeJ_P0060808 Smc4 protein_coding protein_coding MGP_C3HHeJ_T0060809.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67849008 67879803 + MGP_C3HHeJ_P0060809 Smc4 protein_coding protein_coding MGP_C3HHeJ_T0060810.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67849025 67879808 + MGP_C3HHeJ_P0060810 Smc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060811.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67849032 67872765 + MGP_C3HHeJ_P0060811 Smc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060812.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67860875 67862559 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0060813.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67861081 67863673 + Smc4 protein_coding processed_transcript MGP_C3HHeJ_T0060814.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67863281 67865749 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0060815.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67866396 67868627 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0060816.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67868519 67872208 + MGP_C3HHeJ_P0060816 Smc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060817.1 MGP_C3HHeJ_G0027008.1 mouse_genomes_project 3 67875535 67878261 + Smc4 protein_coding retained_intron MGP_C3HHeJ_T0062833.1 MGP_C3HHeJ_G0027474.1 mouse_genomes_project 3 109249552 109276992 + MGP_C3HHeJ_P0062833 Psma5 protein_coding protein_coding MGP_C3HHeJ_T0062834.1 MGP_C3HHeJ_G0027474.1 mouse_genomes_project 3 109265892 109276914 + MGP_C3HHeJ_P0062834 Psma5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059861.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568866 24628050 - MGP_C3HHeJ_P0059861 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059862.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568866 24628033 - MGP_C3HHeJ_P0059862 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059863.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568867 24628026 - MGP_C3HHeJ_P0059863 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059864.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24568870 24628022 - MGP_C3HHeJ_P0059864 Ect2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059865.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24569950 24588349 - MGP_C3HHeJ_P0059865 Ect2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059866.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24588393 24593230 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059867.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24592415 24627984 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059868.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24602164 24608587 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059869.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24619100 24621365 - Ect2 protein_coding retained_intron MGP_C3HHeJ_T0059870.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24619170 24628026 - MGP_C3HHeJ_P0059870 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059871.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24620119 24628000 - MGP_C3HHeJ_P0059871 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059872.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24620135 24627982 - MGP_C3HHeJ_P0059872 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0059873.1 MGP_C3HHeJ_G0026821.1 mouse_genomes_project 3 24620179 24627954 - MGP_C3HHeJ_P0059873 Ect2 protein_coding protein_coding MGP_C3HHeJ_T0014050.1 MGP_C3HHeJ_G0012154.1 mouse_genomes_project 3 100671937 100672105 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059755.1 MGP_C3HHeJ_G0026795.1 mouse_genomes_project 3 13023996 13061137 - protein_coding retained_intron MGP_C3HHeJ_T0062540.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605353 104618605 + MGP_C3HHeJ_P0062540 protein_coding protein_coding MGP_C3HHeJ_T0062542.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605426 104618410 + MGP_C3HHeJ_P0062542 protein_coding protein_coding MGP_C3HHeJ_T0062543.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605433 104618605 + MGP_C3HHeJ_P0062543 protein_coding protein_coding MGP_C3HHeJ_T0062544.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605461 104618607 + MGP_C3HHeJ_P0062544 protein_coding protein_coding MGP_C3HHeJ_T0062545.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605669 104618343 + MGP_C3HHeJ_P0062545 protein_coding protein_coding MGP_C3HHeJ_T0062546.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104605697 104610721 + protein_coding processed_transcript MGP_C3HHeJ_T0062547.1 MGP_C3HHeJ_G0027401.1 mouse_genomes_project 3 104610910 104617266 + MGP_C3HHeJ_P0062547 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013993.1 MGP_C3HHeJ_G0012097.1 mouse_genomes_project 3 84527874 84528535 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060531.1 MGP_C3HHeJ_G0026940.1 mouse_genomes_project 3 53813171 53824202 - MGP_C3HHeJ_P0060531 Gm21954 protein_coding protein_coding MGP_C3HHeJ_T0063411.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131929836 131983426 + Col25a1 protein_coding processed_transcript MGP_C3HHeJ_T0063412.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132354071 + Col25a1 protein_coding retained_intron MGP_C3HHeJ_T0063413.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132407585 + MGP_C3HHeJ_P0063413 Col25a1 protein_coding protein_coding MGP_C3HHeJ_T0063414.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132404011 + MGP_C3HHeJ_P0063414 Col25a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063415.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131981437 132402822 + MGP_C3HHeJ_P0063415 Col25a1 protein_coding protein_coding MGP_C3HHeJ_T0063416.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 131982032 132407595 + MGP_C3HHeJ_P0063416 Col25a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063417.1 MGP_C3HHeJ_G0027580.1 mouse_genomes_project 3 132287945 132290665 + Col25a1 protein_coding retained_intron MGP_C3HHeJ_T0010467.1 MGP_C3HHeJ_G0008600.1 mouse_genomes_project 3 129214027 129214096 + Mir302a miRNA miRNA MGP_C3HHeJ_T0098436.1 MGP_C3HHeJ_G0036641.1 mouse_genomes_project 3 104664062 104666153 + Gm43065 sense_intronic sense_intronic MGP_C3HHeJ_T0062606.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105672334 105714787 - MGP_C3HHeJ_P0062606 Capza1 protein_coding protein_coding MGP_C3HHeJ_T0062607.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105683398 105714682 - MGP_C3HHeJ_P0062607 Capza1 protein_coding protein_coding MGP_C3HHeJ_T0062608.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105689078 105691946 - Capza1 protein_coding retained_intron MGP_C3HHeJ_T0062609.1 MGP_C3HHeJ_G0027414.1 mouse_genomes_project 3 105691271 105714655 - Capza1 protein_coding retained_intron MGP_C3HHeJ_T0061837.1 MGP_C3HHeJ_G0027251.1 mouse_genomes_project 3 94404655 94409904 + MGP_C3HHeJ_P0061837 Them5 protein_coding protein_coding MGP_C3HHeJ_T0061838.1 MGP_C3HHeJ_G0027251.1 mouse_genomes_project 3 94404815 94409902 + MGP_C3HHeJ_P0061838 Them5 protein_coding protein_coding MGP_C3HHeJ_T0062114.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95987731 96050552 - MGP_C3HHeJ_P0062114 Rprd2 protein_coding protein_coding MGP_C3HHeJ_T0062115.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95987734 96050559 - MGP_C3HHeJ_P0062115 Rprd2 protein_coding protein_coding MGP_C3HHeJ_T0062116.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95997936 96004105 - Rprd2 protein_coding retained_intron MGP_C3HHeJ_T0062117.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 95999634 96050579 - MGP_C3HHeJ_P0062117 Rprd2 protein_coding protein_coding MGP_C3HHeJ_T0062118.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 96000449 96004083 - Rprd2 protein_coding processed_transcript MGP_C3HHeJ_T0062119.1 MGP_C3HHeJ_G0027298.1 mouse_genomes_project 3 96011558 96050664 - Rprd2 protein_coding retained_intron MGP_C3HHeJ_T0004139.1 MGP_C3HHeJ_G0003643.1 mouse_genomes_project 3 28377427 28378398 - 4933429H19Rik antisense antisense MGP_C3HHeJ_T0004140.1 MGP_C3HHeJ_G0003643.1 mouse_genomes_project 3 28377971 28378394 - 4933429H19Rik antisense antisense MGP_C3HHeJ_T0013956.1 MGP_C3HHeJ_G0012060.1 mouse_genomes_project 3 69331053 69331612 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001148.1 MGP_C3HHeJ_G0001082.1 mouse_genomes_project 3 49087981 49090630 - TEC TEC MGP_C3HHeJ_T0017747.1 MGP_C3HHeJ_G0015273.1 mouse_genomes_project 3 95162291 95163743 + 4930481B07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017748.1 MGP_C3HHeJ_G0015273.1 mouse_genomes_project 3 95162915 95166819 + 4930481B07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064072.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156638632 156950111 + MGP_C3HHeJ_P0064072 Slc44a5 protein_coding protein_coding MGP_C3HHeJ_T0064073.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156805098 156946169 + MGP_C3HHeJ_P0064073 Slc44a5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064074.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156900619 156903715 + Slc44a5 protein_coding processed_transcript MGP_C3HHeJ_T0064075.1 MGP_C3HHeJ_G0027702.1 mouse_genomes_project 3 156935279 156950111 + Slc44a5 protein_coding retained_intron MGP_C3HHeJ_T0060707.1 MGP_C3HHeJ_G0026986.1 mouse_genomes_project 3 63504888 63653767 - MGP_C3HHeJ_P0060707 protein_coding protein_coding MGP_C3HHeJ_T0059766.1 MGP_C3HHeJ_G0026802.1 mouse_genomes_project 3 15837512 15839113 + MGP_C3HHeJ_P0059766 protein_coding protein_coding MGP_C3HHeJ_T0064112.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314311 160098457 + MGP_C3HHeJ_P0064112 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0064113.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314476 159945498 + MGP_C3HHeJ_P0064113 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0064114.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314486 159972849 + MGP_C3HHeJ_P0064114 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0064115.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314663 159318691 + Negr1 protein_coding retained_intron MGP_C3HHeJ_T0064116.1 MGP_C3HHeJ_G0027710.1 mouse_genomes_project 3 159314667 159768256 + MGP_C3HHeJ_P0064116 Negr1 protein_coding protein_coding MGP_C3HHeJ_T0060603.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57565599 57582397 - MGP_C3HHeJ_P0060603 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060604.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566369 57605687 - MGP_C3HHeJ_P0060604 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060605.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566369 57582259 - MGP_C3HHeJ_P0060605 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060606.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566370 57582257 - MGP_C3HHeJ_P0060606 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060607.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57566676 57582962 - MGP_C3HHeJ_P0060607 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060608.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57567451 57582848 - MGP_C3HHeJ_P0060608 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060609.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57567755 57582753 - MGP_C3HHeJ_P0060609 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060610.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57567770 57584087 - MGP_C3HHeJ_P0060610 P2ry14 protein_coding protein_coding MGP_C3HHeJ_T0060611.1 MGP_C3HHeJ_G0026959.1 mouse_genomes_project 3 57598024 57605813 - P2ry14 protein_coding retained_intron MGP_C3HHeJ_T0013995.1 MGP_C3HHeJ_G0012099.1 mouse_genomes_project 3 85564223 85564656 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060109.1 MGP_C3HHeJ_G0026865.1 mouse_genomes_project 3 32394738 32396789 + MGP_C3HHeJ_P0060109 Sox2 protein_coding protein_coding MGP_C3HHeJ_T0010416.1 MGP_C3HHeJ_G0008549.1 mouse_genomes_project 3 24495188 24495323 - Gm44464 miRNA miRNA MGP_C3HHeJ_T0099273.1 MGP_C3HHeJ_G0037467.1 mouse_genomes_project 3 86357709 86357869 + Gm23376 snRNA snRNA MGP_C3HHeJ_T0098122.1 MGP_C3HHeJ_G0036334.1 mouse_genomes_project 3 50048665 50048782 + n-R5s196 rRNA rRNA MGP_C3HHeJ_T0063858.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148808430 148811571 + Ctbs protein_coding retained_intron MGP_C3HHeJ_T0063859.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148809105 148824781 + MGP_C3HHeJ_P0063859 Ctbs protein_coding protein_coding MGP_C3HHeJ_T0063860.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148809113 148815973 + MGP_C3HHeJ_P0063860 Ctbs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063861.1 MGP_C3HHeJ_G0027672.1 mouse_genomes_project 3 148809128 148824703 + MGP_C3HHeJ_P0063861 Ctbs protein_coding protein_coding MGP_C3HHeJ_T0062900.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109824370 109873918 - MGP_C3HHeJ_P0062900 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0062901.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109825622 109834974 - Stxbp3 protein_coding retained_intron MGP_C3HHeJ_T0062902.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109826066 109830224 - Stxbp3 protein_coding retained_intron MGP_C3HHeJ_T0062903.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109832551 109838171 - Stxbp3 protein_coding retained_intron MGP_C3HHeJ_T0062904.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109842395 109873858 - MGP_C3HHeJ_P0062904 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0062905.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109854183 109873922 - Stxbp3 protein_coding processed_transcript MGP_C3HHeJ_T0062906.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109856913 109873933 - MGP_C3HHeJ_P0062906 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0062907.1 MGP_C3HHeJ_G0027488.1 mouse_genomes_project 3 109857998 109873917 - MGP_C3HHeJ_P0062907 Stxbp3 protein_coding protein_coding MGP_C3HHeJ_T0063014.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117772605 117791915 - MGP_C3HHeJ_P0063014 Rtca protein_coding protein_coding MGP_C3HHeJ_T0063015.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117772882 117779672 - Rtca protein_coding retained_intron MGP_C3HHeJ_T0063016.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117777857 117791731 - MGP_C3HHeJ_P0063016 Rtca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063017.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117779397 117791772 - MGP_C3HHeJ_P0063017 Rtca protein_coding protein_coding MGP_C3HHeJ_T0063018.1 MGP_C3HHeJ_G0027511.1 mouse_genomes_project 3 117783252 117791840 - MGP_C3HHeJ_P0063018 Rtca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013853.1 MGP_C3HHeJ_G0011957.1 mouse_genomes_project 3 37113633 37114861 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014109.1 MGP_C3HHeJ_G0012213.1 mouse_genomes_project 3 118155196 118155581 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061679.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89864055 89879551 + MGP_C3HHeJ_P0061679 Dennd4b protein_coding protein_coding MGP_C3HHeJ_T0061680.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89865384 89879551 + MGP_C3HHeJ_P0061680 Dennd4b protein_coding protein_coding MGP_C3HHeJ_T0061681.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89866331 89874526 + MGP_C3HHeJ_P0061681 Dennd4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061682.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89867886 89870568 + MGP_C3HHeJ_P0061682 Dennd4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061683.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89874343 89876360 + MGP_C3HHeJ_P0061683 Dennd4b protein_coding protein_coding MGP_C3HHeJ_T0061684.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89876284 89877225 + Dennd4b protein_coding retained_intron MGP_C3HHeJ_T0061685.1 MGP_C3HHeJ_G0027175.1 mouse_genomes_project 3 89876889 89877552 + Dennd4b protein_coding retained_intron MGP_C3HHeJ_T0014051.1 MGP_C3HHeJ_G0012155.1 mouse_genomes_project 3 101024914 101025940 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017739.1 MGP_C3HHeJ_G0015269.1 mouse_genomes_project 3 81914565 81917448 - Gm29999 processed_transcript retained_intron MGP_C3HHeJ_T0017740.1 MGP_C3HHeJ_G0015269.1 mouse_genomes_project 3 81914711 81919033 - Gm29999 processed_transcript lincRNA MGP_C3HHeJ_T0061252.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87933466 87950161 - MGP_C3HHeJ_P0061252 Pmf1 protein_coding protein_coding MGP_C3HHeJ_T0061253.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87933466 87950156 - MGP_C3HHeJ_P0061253 Pmf1 protein_coding protein_coding MGP_C3HHeJ_T0061254.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87933702 87950095 - Pmf1 protein_coding processed_transcript MGP_C3HHeJ_T0061255.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87935066 87936044 - Pmf1 protein_coding retained_intron MGP_C3HHeJ_T0061256.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87935391 87950116 - MGP_C3HHeJ_P0061256 Pmf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061257.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87936688 87939033 - Pmf1 protein_coding retained_intron MGP_C3HHeJ_T0061258.1 MGP_C3HHeJ_G0027110.1 mouse_genomes_project 3 87938855 87950138 - Pmf1 protein_coding retained_intron MGP_C3HHeJ_T0007393.1 MGP_C3HHeJ_G0006051.1 mouse_genomes_project 3 17841535 17844642 - Gm31466 lincRNA lincRNA MGP_C3HHeJ_T0098583.1 MGP_C3HHeJ_G0036778.1 mouse_genomes_project 3 147712444 147713479 + D530037P16Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0061890.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94846999 94891613 - MGP_C3HHeJ_P0061890 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061891.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94846999 94891584 - MGP_C3HHeJ_P0061891 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061892.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94876379 94891588 - MGP_C3HHeJ_P0061892 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061893.1 MGP_C3HHeJ_G0027263.1 mouse_genomes_project 3 94876379 94891572 - MGP_C3HHeJ_P0061893 Cgn protein_coding protein_coding MGP_C3HHeJ_T0061811.1 MGP_C3HHeJ_G0027236.1 mouse_genomes_project 3 92801976 92803095 + MGP_C3HHeJ_P0061811 Lce3b protein_coding protein_coding MGP_C3HHeJ_T0001110.1 MGP_C3HHeJ_G0001044.1 mouse_genomes_project 3 32387545 32390430 + TEC TEC MGP_C3HHeJ_T0014008.1 MGP_C3HHeJ_G0012112.1 mouse_genomes_project 3 90335661 90336395 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014178.1 MGP_C3HHeJ_G0012282.1 mouse_genomes_project 3 140512887 140513256 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098434.1 MGP_C3HHeJ_G0036639.1 mouse_genomes_project 3 104576532 104577598 - Gm43387 sense_intronic sense_intronic MGP_C3HHeJ_T0007611.1 MGP_C3HHeJ_G0006219.1 mouse_genomes_project 3 129660454 129662585 + Gm43053 lincRNA lincRNA MGP_C3HHeJ_T0004141.1 MGP_C3HHeJ_G0003644.1 mouse_genomes_project 3 28895605 28928005 + Gm15496 antisense antisense MGP_C3HHeJ_T0004142.1 MGP_C3HHeJ_G0003644.1 mouse_genomes_project 3 28922138 28926120 + Gm15496 antisense antisense MGP_C3HHeJ_T0060919.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79018681 79051330 - MGP_C3HHeJ_P0060919 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060920.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79019250 79049019 - MGP_C3HHeJ_P0060920 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060921.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79020183 79051535 - MGP_C3HHeJ_P0060921 Tmem144 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060922.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79038382 79062243 - MGP_C3HHeJ_P0060922 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060923.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79045445 79062238 - MGP_C3HHeJ_P0060923 Tmem144 protein_coding protein_coding MGP_C3HHeJ_T0060924.1 MGP_C3HHeJ_G0027034.1 mouse_genomes_project 3 79045574 79051563 - Tmem144 protein_coding processed_transcript MGP_C3HHeJ_T0013942.1 MGP_C3HHeJ_G0012046.1 mouse_genomes_project 3 66587193 66588523 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001330.1 MGP_C3HHeJ_G0001261.1 mouse_genomes_project 3 138650553 138652076 + TEC TEC MGP_C3HHeJ_T0014059.1 MGP_C3HHeJ_G0012163.1 mouse_genomes_project 3 102775327 102777012 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001073.1 MGP_C3HHeJ_G0001008.1 mouse_genomes_project 3 277047 277174 + TEC TEC MGP_C3HHeJ_T0061757.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90237211 90238744 + MGP_C3HHeJ_P0061757 S100a6 protein_coding protein_coding MGP_C3HHeJ_T0061758.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90237483 90238337 + S100a6 protein_coding retained_intron MGP_C3HHeJ_T0061759.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90237634 90238744 + MGP_C3HHeJ_P0061759 S100a6 protein_coding protein_coding MGP_C3HHeJ_T0061760.1 MGP_C3HHeJ_G0027192.1 mouse_genomes_project 3 90238089 90248505 + MGP_C3HHeJ_P0061760 S100a6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101203.1 MGP_C3HHeJ_G0039340.1 mouse_genomes_project 3 130550741 130551427 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0063469.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134487136 134643053 + MGP_C3HHeJ_P0063469 Tbck protein_coding protein_coding MGP_C3HHeJ_T0063470.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134487160 134502712 + Tbck protein_coding retained_intron MGP_C3HHeJ_T0063471.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134487192 134602656 + Tbck protein_coding processed_transcript MGP_C3HHeJ_T0063472.1 MGP_C3HHeJ_G0027593.1 mouse_genomes_project 3 134592731 134639882 + Tbck protein_coding processed_transcript MGP_C3HHeJ_T0099296.1 MGP_C3HHeJ_G0037490.1 mouse_genomes_project 3 105438437 105438519 - Gm26091 snRNA snRNA MGP_C3HHeJ_T0101941.1 MGP_C3HHeJ_G0039906.1 mouse_genomes_project 3 20413412 20415915 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101416.1 MGP_C3HHeJ_G0039449.1 mouse_genomes_project 3 129144060 129145802 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0060502.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457171 53482383 + MGP_C3HHeJ_P0060502 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060503.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457176 53474387 + Spg20 protein_coding retained_intron MGP_C3HHeJ_T0060504.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457192 53482372 + MGP_C3HHeJ_P0060504 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060505.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457201 53459316 + Spg20 protein_coding retained_intron MGP_C3HHeJ_T0060506.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457229 53482378 + MGP_C3HHeJ_P0060506 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060507.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457450 53474755 + MGP_C3HHeJ_P0060507 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060508.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53457659 53462324 + MGP_C3HHeJ_P0060508 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0060509.1 MGP_C3HHeJ_G0026936.1 mouse_genomes_project 3 53461238 53462396 + MGP_C3HHeJ_P0060509 Spg20 protein_coding protein_coding MGP_C3HHeJ_T0100579.1 MGP_C3HHeJ_G0038773.1 mouse_genomes_project 3 126060076 126060206 + Gm22900 snoRNA snoRNA MGP_C3HHeJ_T0061558.1 MGP_C3HHeJ_G0027158.1 mouse_genomes_project 3 89077450 89228358 + MGP_C3HHeJ_P0061558 Kcnn3 protein_coding protein_coding MGP_C3HHeJ_T0061559.1 MGP_C3HHeJ_G0027158.1 mouse_genomes_project 3 89223119 89235599 + Kcnn3 protein_coding retained_intron MGP_C3HHeJ_T0099279.1 MGP_C3HHeJ_G0037473.1 mouse_genomes_project 3 89793373 89793478 + Gm24185 snRNA snRNA MGP_C3HHeJ_T0013806.1 MGP_C3HHeJ_G0011910.1 mouse_genomes_project 3 18980201 18980973 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063938.1 MGP_C3HHeJ_G0027686.1 mouse_genomes_project 3 154375256 154418427 - MGP_C3HHeJ_P0063938 Ptgfr protein_coding protein_coding MGP_C3HHeJ_T0063939.1 MGP_C3HHeJ_G0027686.1 mouse_genomes_project 3 154380075 154416818 - MGP_C3HHeJ_P0063939 Ptgfr protein_coding protein_coding MGP_C3HHeJ_T0063940.1 MGP_C3HHeJ_G0027686.1 mouse_genomes_project 3 154380447 154414950 - Ptgfr protein_coding processed_transcript MGP_C3HHeJ_T0098290.1 MGP_C3HHeJ_G0036502.1 mouse_genomes_project 3 109572008 109572422 - Scarna2 scaRNA scaRNA MGP_C3HHeJ_T0007417.1 MGP_C3HHeJ_G0006073.1 mouse_genomes_project 3 32528511 32540513 + Gm38509 lincRNA lincRNA MGP_C3HHeJ_T0063851.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756575 148796345 + MGP_C3HHeJ_P0063851 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063852.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756575 148795983 + MGP_C3HHeJ_P0063852 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063853.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756597 148796334 + MGP_C3HHeJ_P0063853 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063854.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756619 148795107 + MGP_C3HHeJ_P0063854 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063855.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756624 148770938 + MGP_C3HHeJ_P0063855 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063856.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148756911 148771898 + MGP_C3HHeJ_P0063856 Ssx2ip protein_coding protein_coding MGP_C3HHeJ_T0063857.1 MGP_C3HHeJ_G0027671.1 mouse_genomes_project 3 148785958 148788777 + Ssx2ip protein_coding retained_intron MGP_C3HHeJ_T0063241.1 MGP_C3HHeJ_G0027553.1 mouse_genomes_project 3 125877798 125881687 + MGP_C3HHeJ_P0063241 Tram1l1 protein_coding protein_coding MGP_C3HHeJ_T0014164.1 MGP_C3HHeJ_G0012268.1 mouse_genomes_project 3 137014343 137014932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013758.1 MGP_C3HHeJ_G0011862.1 mouse_genomes_project 3 6316902 6317224 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011442.1 MGP_C3HHeJ_G0009575.1 mouse_genomes_project 3 41884181 41884490 + Gm25714 misc_RNA misc_RNA MGP_C3HHeJ_T0059811.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314106 17355517 - MGP_C3HHeJ_P0059811 Hps3 protein_coding protein_coding MGP_C3HHeJ_T0059812.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314112 17355482 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059813.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314333 17333255 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0059814.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17314336 17355504 - MGP_C3HHeJ_P0059814 Hps3 protein_coding protein_coding MGP_C3HHeJ_T0059815.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17320508 17332061 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0059816.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17330358 17355504 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059817.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17331653 17355496 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059818.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17334080 17355504 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059819.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17334345 17355498 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0059820.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17335488 17355496 - Hps3 protein_coding retained_intron MGP_C3HHeJ_T0059821.1 MGP_C3HHeJ_G0026811.1 mouse_genomes_project 3 17355029 17355504 - Hps3 protein_coding processed_transcript MGP_C3HHeJ_T0004326.1 MGP_C3HHeJ_G0003769.1 mouse_genomes_project 3 151417881 151432790 + Gm43573 antisense antisense MGP_C3HHeJ_T0013909.1 MGP_C3HHeJ_G0012013.1 mouse_genomes_project 3 56723138 56723510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007663.1 MGP_C3HHeJ_G0006264.1 mouse_genomes_project 3 145897678 145983748 + Gm42705 lincRNA lincRNA MGP_C3HHeJ_T0007574.1 MGP_C3HHeJ_G0006191.1 mouse_genomes_project 3 108033445 108041795 + A930002I21Rik lincRNA lincRNA MGP_C3HHeJ_T0007575.1 MGP_C3HHeJ_G0006191.1 mouse_genomes_project 3 108033447 108040614 + A930002I21Rik lincRNA lincRNA MGP_C3HHeJ_T0004274.1 MGP_C3HHeJ_G0003730.1 mouse_genomes_project 3 109280908 109281855 - Gm12523 antisense antisense MGP_C3HHeJ_T0063023.1 MGP_C3HHeJ_G0027513.1 mouse_genomes_project 3 117848287 117862663 + Lrrc39 protein_coding retained_intron MGP_C3HHeJ_T0063024.1 MGP_C3HHeJ_G0027513.1 mouse_genomes_project 3 117848292 117876867 + MGP_C3HHeJ_P0063024 Lrrc39 protein_coding protein_coding MGP_C3HHeJ_T0001297.1 MGP_C3HHeJ_G0001229.1 mouse_genomes_project 3 128826507 128830202 - TEC TEC MGP_C3HHeJ_T0061571.1 MGP_C3HHeJ_G0027161.1 mouse_genomes_project 3 89336035 89346332 + MGP_C3HHeJ_P0061571 Ube2q1 protein_coding protein_coding MGP_C3HHeJ_T0061572.1 MGP_C3HHeJ_G0027161.1 mouse_genomes_project 3 89336183 89339743 + Ube2q1 protein_coding retained_intron MGP_C3HHeJ_T0061033.1 MGP_C3HHeJ_G0027061.1 mouse_genomes_project 3 83844512 85299343 - MGP_C3HHeJ_P0061033 protein_coding protein_coding MGP_C3HHeJ_T0061056.1 MGP_C3HHeJ_G0027061.1 mouse_genomes_project 3 85208970 85299345 - protein_coding processed_transcript MGP_C3HHeJ_T0061057.1 MGP_C3HHeJ_G0027061.1 mouse_genomes_project 3 85225030 85299195 - protein_coding retained_intron MGP_C3HHeJ_T0001236.1 MGP_C3HHeJ_G0001168.1 mouse_genomes_project 3 97090116 97090640 + TEC TEC MGP_C3HHeJ_T0100575.1 MGP_C3HHeJ_G0038769.1 mouse_genomes_project 3 117748802 117748899 + Gm26358 snoRNA snoRNA MGP_C3HHeJ_T0007623.1 MGP_C3HHeJ_G0006229.1 mouse_genomes_project 3 133531550 133806292 + lincRNA lincRNA MGP_C3HHeJ_T0063603.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844746 139858208 + MGP_C3HHeJ_P0063603 H2afz protein_coding protein_coding MGP_C3HHeJ_T0063604.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844764 139857536 + H2afz protein_coding processed_transcript MGP_C3HHeJ_T0063605.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844867 139857901 + MGP_C3HHeJ_P0063605 H2afz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063606.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139844867 139857901 + MGP_C3HHeJ_P0063606 H2afz protein_coding protein_coding MGP_C3HHeJ_T0063607.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139856420 139857927 + H2afz protein_coding retained_intron MGP_C3HHeJ_T0063608.1 MGP_C3HHeJ_G0027616.1 mouse_genomes_project 3 139856566 139857840 + H2afz protein_coding retained_intron MGP_C3HHeJ_T0004146.1 MGP_C3HHeJ_G0003648.1 mouse_genomes_project 3 30730493 30793494 + 4930419G24Rik antisense antisense MGP_C3HHeJ_T0001235.1 MGP_C3HHeJ_G0001167.1 mouse_genomes_project 3 97030205 97031000 - TEC TEC MGP_C3HHeJ_T0061774.1 MGP_C3HHeJ_G0027202.1 mouse_genomes_project 3 91975364 91983112 - MGP_C3HHeJ_P0061774 Lelp1 protein_coding protein_coding MGP_C3HHeJ_T0001319.1 MGP_C3HHeJ_G0001250.1 mouse_genomes_project 3 133382178 133385569 - TEC TEC MGP_C3HHeJ_T0001228.1 MGP_C3HHeJ_G0001160.1 mouse_genomes_project 3 93192359 93194907 + TEC TEC MGP_C3HHeJ_T0101960.1 MGP_C3HHeJ_G0039925.1 mouse_genomes_project 3 90082008 90084070 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0061213.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834388 87859050 + MGP_C3HHeJ_P0061213 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061214.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834389 87836220 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061215.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834395 87858790 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061216.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834398 87851689 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061217.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834425 87858790 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061218.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834446 87859049 + MGP_C3HHeJ_P0061218 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061219.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87834460 87858790 + MGP_C3HHeJ_P0061219 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061220.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87840110 87857933 + MGP_C3HHeJ_P0061220 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0061221.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87858277 87859047 + Cct3 protein_coding retained_intron MGP_C3HHeJ_T0061222.1 MGP_C3HHeJ_G0027104.1 mouse_genomes_project 3 87858330 87859048 + MGP_C3HHeJ_P0061222 Cct3 protein_coding protein_coding MGP_C3HHeJ_T0013977.1 MGP_C3HHeJ_G0012081.1 mouse_genomes_project 3 77271619 77273183 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014214.1 MGP_C3HHeJ_G0012318.1 mouse_genomes_project 3 156399513 156399806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014171.1 MGP_C3HHeJ_G0012275.1 mouse_genomes_project 3 137980643 137982777 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004185.1 MGP_C3HHeJ_G0003677.1 mouse_genomes_project 3 64649020 64693058 - Gm37359 antisense antisense MGP_C3HHeJ_T0001341.1 MGP_C3HHeJ_G0001272.1 mouse_genomes_project 3 153652525 153658501 - TEC TEC MGP_C3HHeJ_T0007668.1 MGP_C3HHeJ_G0006268.1 mouse_genomes_project 3 146267260 146303395 - Gm42709 lincRNA lincRNA MGP_C3HHeJ_T0014140.1 MGP_C3HHeJ_G0012244.1 mouse_genomes_project 3 129372348 129372890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001268.1 MGP_C3HHeJ_G0001200.1 mouse_genomes_project 3 122939616 122940904 + TEC TEC MGP_C3HHeJ_T0062184.1 MGP_C3HHeJ_G0027310.1 mouse_genomes_project 3 96424253 96431549 + MGP_C3HHeJ_P0062184 Sf3b4 protein_coding protein_coding MGP_C3HHeJ_T0062185.1 MGP_C3HHeJ_G0027310.1 mouse_genomes_project 3 96424468 96425268 + Sf3b4 protein_coding retained_intron MGP_C3HHeJ_T0007603.1 MGP_C3HHeJ_G0006213.1 mouse_genomes_project 3 124188436 124196333 - Gm43568 lincRNA lincRNA MGP_C3HHeJ_T0007604.1 MGP_C3HHeJ_G0006213.1 mouse_genomes_project 3 124193382 124195828 - Gm43568 lincRNA lincRNA MGP_C3HHeJ_T0007605.1 MGP_C3HHeJ_G0006213.1 mouse_genomes_project 3 124194798 124196050 - Gm43568 lincRNA lincRNA MGP_C3HHeJ_T0061067.1 MGP_C3HHeJ_G0027070.1 mouse_genomes_project 3 85557334 85562005 - MGP_C3HHeJ_P0061067 Rps3a1 protein_coding protein_coding MGP_C3HHeJ_T0007609.1 MGP_C3HHeJ_G0006217.1 mouse_genomes_project 3 129540850 129544523 + Gm42586 lincRNA lincRNA MGP_C3HHeJ_T0001281.1 MGP_C3HHeJ_G0001213.1 mouse_genomes_project 3 125955837 125956772 - TEC TEC MGP_C3HHeJ_T0007473.1 MGP_C3HHeJ_G0006114.1 mouse_genomes_project 3 56544557 56566620 - 1700007F19Rik lincRNA lincRNA MGP_C3HHeJ_T0010415.1 MGP_C3HHeJ_G0008548.1 mouse_genomes_project 3 24082338 24082465 - Gm25773 miRNA miRNA MGP_C3HHeJ_T0017763.1 MGP_C3HHeJ_G0015280.1 mouse_genomes_project 3 109383143 109388383 - Gm12522 processed_transcript processed_transcript MGP_C3HHeJ_T0014015.1 MGP_C3HHeJ_G0012119.1 mouse_genomes_project 3 92331874 92332178 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007694.1 MGP_C3HHeJ_G0006286.1 mouse_genomes_project 3 154476502 154484290 + Gm43617 lincRNA lincRNA MGP_C3HHeJ_T0001083.1 MGP_C3HHeJ_G0001017.1 mouse_genomes_project 3 15587461 15592291 + TEC TEC MGP_C3HHeJ_T0061223.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862305 87868596 + MGP_C3HHeJ_P0061223 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061224.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862337 87866794 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061225.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862340 87863861 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061226.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862342 87864870 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061227.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862354 87863750 + MGP_C3HHeJ_P0061227 Glmp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061228.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862364 87865646 + MGP_C3HHeJ_P0061228 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061229.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862364 87865651 + MGP_C3HHeJ_P0061229 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061230.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87862364 87865651 + MGP_C3HHeJ_P0061230 Glmp protein_coding protein_coding MGP_C3HHeJ_T0061231.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87863326 87865601 + Glmp protein_coding retained_intron MGP_C3HHeJ_T0061232.1 MGP_C3HHeJ_G0027105.1 mouse_genomes_project 3 87863460 87865864 + MGP_C3HHeJ_P0061232 Glmp protein_coding protein_coding MGP_C3HHeJ_T0004216.1 MGP_C3HHeJ_G0003700.1 mouse_genomes_project 3 95105106 95108054 - B230398E01Rik antisense antisense MGP_C3HHeJ_T0063083.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981453 120885107 + MGP_C3HHeJ_P0063083 Dpyd protein_coding protein_coding MGP_C3HHeJ_T0063084.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981454 120219069 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0063085.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981501 120203201 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0063086.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981504 120095394 + MGP_C3HHeJ_P0063086 Dpyd protein_coding protein_coding MGP_C3HHeJ_T0063087.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 119981510 119982477 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0063088.1 MGP_C3HHeJ_G0027526.1 mouse_genomes_project 3 120233287 120334269 + Dpyd protein_coding retained_intron MGP_C3HHeJ_T0004155.1 MGP_C3HHeJ_G0003653.1 mouse_genomes_project 3 34896140 34903949 - Gm12531 antisense antisense MGP_C3HHeJ_T0004156.1 MGP_C3HHeJ_G0003653.1 mouse_genomes_project 3 34896142 34903944 - Gm12531 antisense antisense MGP_C3HHeJ_T0007685.1 MGP_C3HHeJ_G0006281.1 mouse_genomes_project 3 152018824 152127575 - Gm31121 lincRNA lincRNA MGP_C3HHeJ_T0014136.1 MGP_C3HHeJ_G0012240.1 mouse_genomes_project 3 126613395 126614407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001227.1 MGP_C3HHeJ_G0001159.1 mouse_genomes_project 3 89937962 89940519 + TEC TEC MGP_C3HHeJ_T0062289.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97542225 97565943 - MGP_C3HHeJ_P0062289 Bcl9 protein_coding protein_coding MGP_C3HHeJ_T0062290.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97543191 97555086 - MGP_C3HHeJ_P0062290 Bcl9 protein_coding protein_coding MGP_C3HHeJ_T0062291.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97549026 97552573 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062292.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97553074 97566798 - Bcl9 protein_coding retained_intron MGP_C3HHeJ_T0062293.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97555106 97567314 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062294.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97555131 97638830 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062295.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97555131 97562556 - Bcl9 protein_coding processed_transcript MGP_C3HHeJ_T0062296.1 MGP_C3HHeJ_G0027343.1 mouse_genomes_project 3 97560403 97562788 - Bcl9 protein_coding retained_intron MGP_C3HHeJ_T0061510.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88893966 88909008 - MGP_C3HHeJ_P0061510 Dcst1 protein_coding protein_coding MGP_C3HHeJ_T0061511.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88894770 88899294 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0061512.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88896468 88899264 - Dcst1 protein_coding processed_transcript MGP_C3HHeJ_T0061513.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88897376 88898646 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0061514.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88901255 88908017 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0061515.1 MGP_C3HHeJ_G0027148.1 mouse_genomes_project 3 88901340 88908018 - Dcst1 protein_coding retained_intron MGP_C3HHeJ_T0004334.1 MGP_C3HHeJ_G0003775.1 mouse_genomes_project 3 156570321 156575505 + Gm43400 antisense antisense MGP_C3HHeJ_T0060704.1 MGP_C3HHeJ_G0026984.1 mouse_genomes_project 3 62766126 62781659 - MGP_C3HHeJ_P0060704 protein_coding protein_coding MGP_C3HHeJ_T0011436.1 MGP_C3HHeJ_G0009569.1 mouse_genomes_project 3 16646013 16646325 + Gm22282 misc_RNA misc_RNA MGP_C3HHeJ_T0004276.1 MGP_C3HHeJ_G0003732.1 mouse_genomes_project 3 110037739 110039810 + Gm43221 antisense antisense MGP_C3HHeJ_T0017784.1 MGP_C3HHeJ_G0015286.1 mouse_genomes_project 3 125102134 125102988 - Snhg8 processed_transcript lincRNA MGP_C3HHeJ_T0017785.1 MGP_C3HHeJ_G0015286.1 mouse_genomes_project 3 125102137 125102914 - Snhg8 processed_transcript retained_intron MGP_C3HHeJ_T0017786.1 MGP_C3HHeJ_G0015286.1 mouse_genomes_project 3 125102139 125102917 - Snhg8 processed_transcript lincRNA MGP_C3HHeJ_T0063872.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148864148 148879586 - MGP_C3HHeJ_P0063872 Rpf1 protein_coding protein_coding MGP_C3HHeJ_T0063873.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148864536 148866417 - MGP_C3HHeJ_P0063873 Rpf1 protein_coding protein_coding MGP_C3HHeJ_T0063874.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148864615 148866685 - Rpf1 protein_coding retained_intron MGP_C3HHeJ_T0063875.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148866365 148879208 - Rpf1 protein_coding processed_transcript MGP_C3HHeJ_T0063876.1 MGP_C3HHeJ_G0027675.1 mouse_genomes_project 3 148868987 148879568 - MGP_C3HHeJ_P0063876 Rpf1 protein_coding protein_coding MGP_C3HHeJ_T0060965.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615464 81640285 + MGP_C3HHeJ_P0060965 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060966.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615492 81635787 + MGP_C3HHeJ_P0060966 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060967.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615492 81651976 + MGP_C3HHeJ_P0060967 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060968.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615590 81640221 + MGP_C3HHeJ_P0060968 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060969.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81615607 81651976 + MGP_C3HHeJ_P0060969 Map9 protein_coding protein_coding MGP_C3HHeJ_T0060970.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81636537 81638629 + Map9 protein_coding retained_intron MGP_C3HHeJ_T0060971.1 MGP_C3HHeJ_G0027044.1 mouse_genomes_project 3 81636898 81640003 + MGP_C3HHeJ_P0060971 Map9 protein_coding protein_coding MGP_C3HHeJ_T0013787.1 MGP_C3HHeJ_G0011891.1 mouse_genomes_project 3 14482494 14482828 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101186.1 MGP_C3HHeJ_G0039332.1 mouse_genomes_project 3 54195678 54196642 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101187.1 MGP_C3HHeJ_G0039332.1 mouse_genomes_project 3 54195837 54196974 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0007573.1 MGP_C3HHeJ_G0006190.1 mouse_genomes_project 3 107975746 107992593 + AI504432 lincRNA lincRNA MGP_C3HHeJ_T0062527.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104534941 104586493 - MGP_C3HHeJ_P0062527 Hipk1 protein_coding protein_coding MGP_C3HHeJ_T0062528.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104538688 104586011 - MGP_C3HHeJ_P0062528 Hipk1 protein_coding protein_coding MGP_C3HHeJ_T0062529.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104538786 104586186 - MGP_C3HHeJ_P0062529 Hipk1 protein_coding protein_coding MGP_C3HHeJ_T0062530.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104540282 104586491 - MGP_C3HHeJ_P0062530 Hipk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062531.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104543241 104546165 - Hipk1 protein_coding retained_intron MGP_C3HHeJ_T0062532.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104544490 104546114 - Hipk1 protein_coding retained_intron MGP_C3HHeJ_T0062533.1 MGP_C3HHeJ_G0027399.1 mouse_genomes_project 3 104549259 104586205 - Hipk1 protein_coding retained_intron MGP_C3HHeJ_T0017779.1 MGP_C3HHeJ_G0015284.1 mouse_genomes_project 3 123839741 123847366 - processed_transcript retained_intron MGP_C3HHeJ_T0059982.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28484058 28553944 - MGP_C3HHeJ_P0059982 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059983.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28484211 28553948 - MGP_C3HHeJ_P0059983 Phc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059984.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28487527 28550461 - MGP_C3HHeJ_P0059984 Phc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0059985.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491471 28553948 - MGP_C3HHeJ_P0059985 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059986.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491672 28553948 - MGP_C3HHeJ_P0059986 Phc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059987.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491998 28553942 - MGP_C3HHeJ_P0059987 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059988.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491998 28553942 - MGP_C3HHeJ_P0059988 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059989.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28491998 28553942 - MGP_C3HHeJ_P0059989 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059990.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28505323 28517407 - Phc3 protein_coding retained_intron MGP_C3HHeJ_T0059991.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28513415 28553958 - MGP_C3HHeJ_P0059991 Phc3 protein_coding protein_coding MGP_C3HHeJ_T0059992.1 MGP_C3HHeJ_G0026843.1 mouse_genomes_project 3 28542935 28550483 - Phc3 protein_coding retained_intron MGP_C3HHeJ_T0007531.1 MGP_C3HHeJ_G0006154.1 mouse_genomes_project 3 89580829 89583395 + Gm19710 lincRNA lincRNA MGP_C3HHeJ_T0007532.1 MGP_C3HHeJ_G0006154.1 mouse_genomes_project 3 89583184 89604347 + Gm19710 lincRNA lincRNA MGP_C3HHeJ_T0062501.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103919944 103927450 + MGP_C3HHeJ_P0062501 Bcas2 protein_coding protein_coding MGP_C3HHeJ_T0062502.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103919992 103927123 + Bcas2 protein_coding retained_intron MGP_C3HHeJ_T0062503.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920038 103927125 + Bcas2 protein_coding retained_intron MGP_C3HHeJ_T0062504.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920051 103926745 + MGP_C3HHeJ_P0062504 Bcas2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062505.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920061 103927464 + MGP_C3HHeJ_P0062505 Bcas2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062506.1 MGP_C3HHeJ_G0027393.1 mouse_genomes_project 3 103920074 103922845 + Bcas2 protein_coding retained_intron MGP_C3HHeJ_T0063631.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140088798 140130093 - MGP_C3HHeJ_P0063631 Mttp protein_coding protein_coding MGP_C3HHeJ_T0063632.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140089998 140141725 - MGP_C3HHeJ_P0063632 Mttp protein_coding unknown_likely_coding MGP_C3HHeJ_T0063633.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140089998 140141681 - MGP_C3HHeJ_P0063633 Mttp protein_coding protein_coding MGP_C3HHeJ_T0063634.1 MGP_C3HHeJ_G0027623.1 mouse_genomes_project 3 140140555 140143257 - Mttp protein_coding retained_intron MGP_C3HHeJ_T0010450.1 MGP_C3HHeJ_G0008583.1 mouse_genomes_project 3 95150844 95150916 + Mir7013 miRNA miRNA MGP_C3HHeJ_T0013960.1 MGP_C3HHeJ_G0012064.1 mouse_genomes_project 3 70811248 70812213 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064178.1 MGP_C3HHeJ_G0027719.1 mouse_genomes_project 3 162397781 162420987 + MGP_C3HHeJ_P0064178 Rpe65 protein_coding protein_coding MGP_C3HHeJ_T0064179.1 MGP_C3HHeJ_G0027719.1 mouse_genomes_project 3 162397824 162405005 + MGP_C3HHeJ_P0064179 Rpe65 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064180.1 MGP_C3HHeJ_G0027719.1 mouse_genomes_project 3 162397839 162420458 + MGP_C3HHeJ_P0064180 Rpe65 protein_coding protein_coding MGP_C3HHeJ_T0063766.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146760666 146788026 + protein_coding processed_transcript MGP_C3HHeJ_T0063767.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146760788 146788449 + MGP_C3HHeJ_P0063767 protein_coding protein_coding MGP_C3HHeJ_T0063768.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146761055 146788430 + MGP_C3HHeJ_P0063768 protein_coding protein_coding MGP_C3HHeJ_T0063769.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146761076 146763775 + protein_coding retained_intron MGP_C3HHeJ_T0063770.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146768014 146786201 + MGP_C3HHeJ_P0063770 protein_coding protein_coding MGP_C3HHeJ_T0063771.1 MGP_C3HHeJ_G0027650.1 mouse_genomes_project 3 146781305 146782359 + protein_coding retained_intron MGP_C3HHeJ_T0017780.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124335229 124377350 - 4930447N08Rik processed_transcript antisense MGP_C3HHeJ_T0017781.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124342814 124377449 - 4930447N08Rik processed_transcript retained_intron MGP_C3HHeJ_T0017782.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124369591 124377295 - 4930447N08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017783.1 MGP_C3HHeJ_G0015285.1 mouse_genomes_project 3 124369598 124377382 - 4930447N08Rik processed_transcript antisense MGP_C3HHeJ_T0013919.1 MGP_C3HHeJ_G0012023.1 mouse_genomes_project 3 59255981 59256139 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014097.1 MGP_C3HHeJ_G0012201.1 mouse_genomes_project 3 113743650 113744043 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007366.1 MGP_C3HHeJ_G0006036.1 mouse_genomes_project 3 6692108 6723037 + C030034L19Rik lincRNA lincRNA MGP_C3HHeJ_T0007367.1 MGP_C3HHeJ_G0006036.1 mouse_genomes_project 3 6692112 6723952 + C030034L19Rik lincRNA lincRNA MGP_C3HHeJ_T0007368.1 MGP_C3HHeJ_G0006036.1 mouse_genomes_project 3 6692124 6702954 + C030034L19Rik lincRNA lincRNA MGP_C3HHeJ_T0001139.1 MGP_C3HHeJ_G0001073.1 mouse_genomes_project 3 43416625 43419764 + TEC TEC MGP_C3HHeJ_T0060831.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603573 68606049 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060832.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603573 68637657 + MGP_C3HHeJ_P0060832 Nmd3 protein_coding protein_coding MGP_C3HHeJ_T0060833.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603620 68616457 + MGP_C3HHeJ_P0060833 Nmd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060834.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603671 68611955 + MGP_C3HHeJ_P0060834 Nmd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060835.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603678 68613395 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060836.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68603843 68607830 + MGP_C3HHeJ_P0060836 Nmd3 protein_coding protein_coding MGP_C3HHeJ_T0060837.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68605830 68621173 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060838.1 MGP_C3HHeJ_G0027014.1 mouse_genomes_project 3 68627526 68630161 + Nmd3 protein_coding retained_intron MGP_C3HHeJ_T0060095.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31748895 31801034 + MGP_C3HHeJ_P0060095 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060096.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749542 31801063 + MGP_C3HHeJ_P0060096 Fxr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060097.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749549 31801037 + MGP_C3HHeJ_P0060097 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060098.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749552 31801037 + MGP_C3HHeJ_P0060098 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060099.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749552 31802014 + MGP_C3HHeJ_P0060099 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060100.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31749557 31795586 + MGP_C3HHeJ_P0060100 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060101.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31770156 31772290 + Fxr1 protein_coding retained_intron MGP_C3HHeJ_T0060102.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31770159 31777157 + MGP_C3HHeJ_P0060102 Fxr1 protein_coding protein_coding MGP_C3HHeJ_T0060103.1 MGP_C3HHeJ_G0026863.1 mouse_genomes_project 3 31777251 31779739 + Fxr1 protein_coding retained_intron MGP_C3HHeJ_T0013873.1 MGP_C3HHeJ_G0011977.1 mouse_genomes_project 3 45307967 45308433 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101973.1 MGP_C3HHeJ_G0039938.1 mouse_genomes_project 3 107476537 107476956 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0062166.1 MGP_C3HHeJ_G0027307.1 mouse_genomes_project 3 96247746 96306058 - MGP_C3HHeJ_P0062166 Vps45 protein_coding protein_coding MGP_C3HHeJ_T0062167.1 MGP_C3HHeJ_G0027307.1 mouse_genomes_project 3 96292743 96305422 - Vps45 protein_coding retained_intron MGP_C3HHeJ_T0062168.1 MGP_C3HHeJ_G0027307.1 mouse_genomes_project 3 96304478 96305311 - Vps45 protein_coding processed_transcript MGP_C3HHeJ_T0007478.1 MGP_C3HHeJ_G0006117.1 mouse_genomes_project 3 62020513 62041219 + Gm34240 lincRNA lincRNA MGP_C3HHeJ_T0060907.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78816259 78841929 - MGP_C3HHeJ_P0060907 Etfdh protein_coding protein_coding MGP_C3HHeJ_T0060908.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78816274 78841763 - MGP_C3HHeJ_P0060908 Etfdh protein_coding protein_coding MGP_C3HHeJ_T0060909.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78828063 78841749 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060910.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78829648 78841929 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060911.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78831827 78841784 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060912.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78841314 78842566 - Etfdh protein_coding retained_intron MGP_C3HHeJ_T0060913.1 MGP_C3HHeJ_G0027031.1 mouse_genomes_project 3 78841332 78841805 - Etfdh protein_coding processed_transcript MGP_C3HHeJ_T0099251.1 MGP_C3HHeJ_G0037445.1 mouse_genomes_project 3 53649784 53649891 + Gm25132 snRNA snRNA MGP_C3HHeJ_T0062230.1 MGP_C3HHeJ_G0027331.1 mouse_genomes_project 3 96944239 96963018 + MGP_C3HHeJ_P0062230 Itga10 protein_coding protein_coding MGP_C3HHeJ_T0062231.1 MGP_C3HHeJ_G0027331.1 mouse_genomes_project 3 96944239 96963012 + MGP_C3HHeJ_P0062231 Itga10 protein_coding protein_coding MGP_C3HHeJ_T0062232.1 MGP_C3HHeJ_G0027331.1 mouse_genomes_project 3 96956022 96961658 + Itga10 protein_coding retained_intron MGP_C3HHeJ_T0001336.1 MGP_C3HHeJ_G0001267.1 mouse_genomes_project 3 148673645 148674985 + TEC TEC MGP_C3HHeJ_T0013928.1 MGP_C3HHeJ_G0012032.1 mouse_genomes_project 3 62518405 62518695 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062850.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109397299 109422001 - MGP_C3HHeJ_P0062850 Celsr2 protein_coding protein_coding MGP_C3HHeJ_T0062851.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109398670 109405400 - MGP_C3HHeJ_P0062851 Celsr2 protein_coding protein_coding MGP_C3HHeJ_T0062852.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109398827 109399882 - Celsr2 protein_coding processed_transcript MGP_C3HHeJ_T0062853.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109399048 109399973 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0062854.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109399983 109400751 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0062855.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109402008 109402942 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0062856.1 MGP_C3HHeJ_G0027478.1 mouse_genomes_project 3 109407708 109409038 - Celsr2 protein_coding retained_intron MGP_C3HHeJ_T0060661.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60877275 60998857 + MGP_C3HHeJ_P0060661 Arhgef26 protein_coding protein_coding MGP_C3HHeJ_T0060662.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60877930 60913328 + Arhgef26 protein_coding processed_transcript MGP_C3HHeJ_T0060663.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60879321 60911719 + Arhgef26 protein_coding retained_intron MGP_C3HHeJ_T0060664.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60880032 60914588 + Arhgef26 protein_coding processed_transcript MGP_C3HHeJ_T0060665.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60954624 60996848 + MGP_C3HHeJ_P0060665 Arhgef26 protein_coding protein_coding MGP_C3HHeJ_T0060666.1 MGP_C3HHeJ_G0026974.1 mouse_genomes_project 3 60962135 60964967 + Arhgef26 protein_coding retained_intron MGP_C3HHeJ_T0063901.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149229619 149321071 + Ttll7 protein_coding retained_intron MGP_C3HHeJ_T0063902.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149229619 149364181 + MGP_C3HHeJ_P0063902 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063903.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149229619 149365440 + MGP_C3HHeJ_P0063903 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063904.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149274796 149361182 + MGP_C3HHeJ_P0063904 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063905.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149277276 149279127 + MGP_C3HHeJ_P0063905 Ttll7 protein_coding protein_coding MGP_C3HHeJ_T0063906.1 MGP_C3HHeJ_G0027681.1 mouse_genomes_project 3 149324718 149363351 + Ttll7 protein_coding retained_intron MGP_C3HHeJ_T0101956.1 MGP_C3HHeJ_G0039921.1 mouse_genomes_project 3 87904349 87908418 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001273.1 MGP_C3HHeJ_G0001205.1 mouse_genomes_project 3 123558945 123562183 + TEC TEC MGP_C3HHeJ_T0014103.1 MGP_C3HHeJ_G0012207.1 mouse_genomes_project 3 115774812 115775164 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004305.1 MGP_C3HHeJ_G0003756.1 mouse_genomes_project 3 135770712 136078687 - antisense antisense MGP_C3HHeJ_T0004306.1 MGP_C3HHeJ_G0003756.1 mouse_genomes_project 3 135987861 136078834 - antisense antisense MGP_C3HHeJ_T0017749.1 MGP_C3HHeJ_G0015274.1 mouse_genomes_project 3 96508631 96510290 - Gm20627 processed_transcript lincRNA MGP_C3HHeJ_T0017750.1 MGP_C3HHeJ_G0015274.1 mouse_genomes_project 3 96508633 96509482 - Gm20627 processed_transcript retained_intron MGP_C3HHeJ_T0063260.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128223512 128313776 + Camk2d protein_coding processed_transcript MGP_C3HHeJ_T0063261.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224161 128480137 + MGP_C3HHeJ_P0063261 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063262.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224170 128480135 + MGP_C3HHeJ_P0063262 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063263.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224208 128480139 + MGP_C3HHeJ_P0063263 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063264.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224215 128453556 + MGP_C3HHeJ_P0063264 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063265.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224217 128481550 + MGP_C3HHeJ_P0063265 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063266.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224219 128403202 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063267.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224220 128475686 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063268.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224220 128445798 + MGP_C3HHeJ_P0063268 Camk2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063269.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224230 128477939 + MGP_C3HHeJ_P0063269 Camk2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063270.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224245 128479054 + Camk2d protein_coding processed_transcript MGP_C3HHeJ_T0063271.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224307 128478927 + MGP_C3HHeJ_P0063271 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063272.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224416 128481519 + MGP_C3HHeJ_P0063272 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063273.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224518 128478446 + MGP_C3HHeJ_P0063273 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063274.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224551 128314473 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063275.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224609 128478908 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063276.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128224624 128479551 + MGP_C3HHeJ_P0063276 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063277.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128412235 128418856 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063278.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128412811 128444570 + Camk2d protein_coding processed_transcript MGP_C3HHeJ_T0063279.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128418104 128442402 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063280.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128429285 128475485 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063281.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128432156 128479237 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063282.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128435645 128476776 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063283.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128435645 128476776 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063284.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128436852 128478403 + MGP_C3HHeJ_P0063284 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063285.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128438437 128440811 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0063286.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128439773 128478122 + MGP_C3HHeJ_P0063286 Camk2d protein_coding protein_coding MGP_C3HHeJ_T0063287.1 MGP_C3HHeJ_G0027559.1 mouse_genomes_project 3 128441078 128444171 + Camk2d protein_coding retained_intron MGP_C3HHeJ_T0007397.1 MGP_C3HHeJ_G0006055.1 mouse_genomes_project 3 19648450 19660971 - Gm38324 lincRNA lincRNA MGP_C3HHeJ_T0013913.1 MGP_C3HHeJ_G0012017.1 mouse_genomes_project 3 57894330 57899931 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059763.1 MGP_C3HHeJ_G0026799.1 mouse_genomes_project 3 15225489 15226039 + MGP_C3HHeJ_P0059763 Cypt12 protein_coding protein_coding MGP_C3HHeJ_T0014119.1 MGP_C3HHeJ_G0012223.1 mouse_genomes_project 3 122743672 122744276 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100542.1 MGP_C3HHeJ_G0038736.1 mouse_genomes_project 3 63712999 63713125 - Gm25222 snoRNA snoRNA MGP_C3HHeJ_T0013773.1 MGP_C3HHeJ_G0011877.1 mouse_genomes_project 3 10312117 10312460 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014072.1 MGP_C3HHeJ_G0012176.1 mouse_genomes_project 3 106836698 106844278 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014099.1 MGP_C3HHeJ_G0012203.1 mouse_genomes_project 3 114244931 114245762 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001358.1 MGP_C3HHeJ_G0001289.1 mouse_genomes_project 3 159493957 159495632 + TEC TEC MGP_C3HHeJ_T0007359.1 MGP_C3HHeJ_G0006031.1 mouse_genomes_project 3 2671071 2673410 - 4930555M17Rik lincRNA lincRNA MGP_C3HHeJ_T0100559.1 MGP_C3HHeJ_G0038753.1 mouse_genomes_project 3 89592664 89592800 - Gm24608 snoRNA snoRNA MGP_C3HHeJ_T0099245.1 MGP_C3HHeJ_G0037439.1 mouse_genomes_project 3 42918566 42918671 + Gm24997 snRNA snRNA MGP_C3HHeJ_T0007414.1 MGP_C3HHeJ_G0006071.1 mouse_genomes_project 3 32337814 32341534 - Gm43207 lincRNA lincRNA MGP_C3HHeJ_T0010468.1 MGP_C3HHeJ_G0008601.1 mouse_genomes_project 3 129214155 129214221 + Mir302d miRNA miRNA MGP_C3HHeJ_T0063363.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131447568 131527664 - MGP_C3HHeJ_P0063363 Egf protein_coding protein_coding MGP_C3HHeJ_T0063364.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131447581 131496509 - MGP_C3HHeJ_P0063364 Egf protein_coding protein_coding MGP_C3HHeJ_T0063365.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131447583 131496499 - MGP_C3HHeJ_P0063365 Egf protein_coding protein_coding MGP_C3HHeJ_T0063366.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131448340 131451571 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063367.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131456246 131464038 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063368.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131463319 131466231 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063369.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131470570 131496508 - MGP_C3HHeJ_P0063369 Egf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063370.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131506878 131527664 - Egf protein_coding retained_intron MGP_C3HHeJ_T0063371.1 MGP_C3HHeJ_G0027571.1 mouse_genomes_project 3 131508351 131527664 - Egf protein_coding processed_transcript MGP_C3HHeJ_T0013900.1 MGP_C3HHeJ_G0012004.1 mouse_genomes_project 3 55611273 55611526 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060848.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72688597 72767533 - MGP_C3HHeJ_P0060848 Bche protein_coding protein_coding MGP_C3HHeJ_T0060849.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72701157 72767360 - Bche protein_coding retained_intron MGP_C3HHeJ_T0060850.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72760679 72767385 - MGP_C3HHeJ_P0060850 Bche protein_coding protein_coding MGP_C3HHeJ_T0060851.1 MGP_C3HHeJ_G0027019.1 mouse_genomes_project 3 72763168 72767385 - Bche protein_coding processed_transcript MGP_C3HHeJ_T0099313.1 MGP_C3HHeJ_G0037507.1 mouse_genomes_project 3 140338266 140338425 + Gm23467 snRNA snRNA MGP_C3HHeJ_T0001291.1 MGP_C3HHeJ_G0001223.1 mouse_genomes_project 3 128609996 128611036 - TEC TEC MGP_C3HHeJ_T0014092.1 MGP_C3HHeJ_G0012196.1 mouse_genomes_project 3 112405772 112407300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062375.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100757518 100803538 + MGP_C3HHeJ_P0062375 Gdap2 protein_coding protein_coding MGP_C3HHeJ_T0062376.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100757655 100799031 + MGP_C3HHeJ_P0062376 Gdap2 protein_coding protein_coding MGP_C3HHeJ_T0062377.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100757681 100765090 + Gdap2 protein_coding processed_transcript MGP_C3HHeJ_T0062378.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100791146 100803212 + MGP_C3HHeJ_P0062378 Gdap2 protein_coding protein_coding MGP_C3HHeJ_T0062379.1 MGP_C3HHeJ_G0027367.1 mouse_genomes_project 3 100797247 100799031 + Gdap2 protein_coding retained_intron MGP_C3HHeJ_T0013958.1 MGP_C3HHeJ_G0012062.1 mouse_genomes_project 3 70413591 70414032 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063458.1 MGP_C3HHeJ_G0027590.1 mouse_genomes_project 3 133861118 133958427 + MGP_C3HHeJ_P0063458 Dkk2 protein_coding protein_coding MGP_C3HHeJ_T0098461.1 MGP_C3HHeJ_G0036666.1 mouse_genomes_project 3 106889500 106891023 - Gm42721 sense_intronic sense_intronic MGP_C3HHeJ_T0013881.1 MGP_C3HHeJ_G0011985.1 mouse_genomes_project 3 48240784 48241106 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001182.1 MGP_C3HHeJ_G0001114.1 mouse_genomes_project 3 53835621 53839014 + TEC TEC MGP_C3HHeJ_T0013824.1 MGP_C3HHeJ_G0011928.1 mouse_genomes_project 3 29901422 29902194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013804.1 MGP_C3HHeJ_G0011908.1 mouse_genomes_project 3 18137988 18139582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011439.1 MGP_C3HHeJ_G0009572.1 mouse_genomes_project 3 32298209 32298423 + Gm27403 misc_RNA misc_RNA MGP_C3HHeJ_T0004256.1 MGP_C3HHeJ_G0003725.1 mouse_genomes_project 3 106882736 106899123 + Gm42722 antisense antisense MGP_C3HHeJ_T0007403.1 MGP_C3HHeJ_G0006061.1 mouse_genomes_project 3 27459451 27485989 + Mannr lincRNA lincRNA MGP_C3HHeJ_T0061159.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429092 87436401 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061160.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429092 87436401 - MGP_C3HHeJ_P0061160 Rrnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061161.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429398 87436418 - MGP_C3HHeJ_P0061161 Rrnad1 protein_coding protein_coding MGP_C3HHeJ_T0061162.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87429807 87435635 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061163.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430149 87434532 - MGP_C3HHeJ_P0061163 Rrnad1 protein_coding protein_coding MGP_C3HHeJ_T0061164.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430150 87431767 - Rrnad1 protein_coding processed_transcript MGP_C3HHeJ_T0061165.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430154 87436418 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061166.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430154 87436991 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061167.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87430274 87436857 - MGP_C3HHeJ_P0061167 Rrnad1 protein_coding protein_coding MGP_C3HHeJ_T0061168.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87431544 87433366 - Rrnad1 protein_coding retained_intron MGP_C3HHeJ_T0061169.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87431717 87433982 - Rrnad1 protein_coding processed_transcript MGP_C3HHeJ_T0061170.1 MGP_C3HHeJ_G0027090.1 mouse_genomes_project 3 87431747 87436412 - MGP_C3HHeJ_P0061170 Rrnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061105.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003750 87018471 + MGP_C3HHeJ_P0061105 Etv3 protein_coding protein_coding MGP_C3HHeJ_T0061106.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003921 87018457 + MGP_C3HHeJ_P0061106 Etv3 protein_coding protein_coding MGP_C3HHeJ_T0061107.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003950 87018471 + Etv3 protein_coding retained_intron MGP_C3HHeJ_T0061108.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003957 87009387 + MGP_C3HHeJ_P0061108 Etv3 protein_coding protein_coding MGP_C3HHeJ_T0061109.1 MGP_C3HHeJ_G0027080.1 mouse_genomes_project 3 87003961 87009390 + Etv3 protein_coding retained_intron MGP_C3HHeJ_T0060148.1 MGP_C3HHeJ_G0026871.1 mouse_genomes_project 3 33964451 33983777 + MGP_C3HHeJ_P0060148 D3Ertd254e protein_coding protein_coding MGP_C3HHeJ_T0060149.1 MGP_C3HHeJ_G0026871.1 mouse_genomes_project 3 33964596 33976109 + MGP_C3HHeJ_P0060149 D3Ertd254e protein_coding protein_coding MGP_C3HHeJ_T0060150.1 MGP_C3HHeJ_G0026871.1 mouse_genomes_project 3 33972956 33983770 + MGP_C3HHeJ_P0060150 D3Ertd254e protein_coding protein_coding MGP_C3HHeJ_T0060494.1 MGP_C3HHeJ_G0026934.1 mouse_genomes_project 3 53230836 53249532 - MGP_C3HHeJ_P0060494 Sertm1 protein_coding protein_coding MGP_C3HHeJ_T0060495.1 MGP_C3HHeJ_G0026934.1 mouse_genomes_project 3 53230839 53250388 - MGP_C3HHeJ_P0060495 Sertm1 protein_coding protein_coding MGP_C3HHeJ_T0001323.1 MGP_C3HHeJ_G0001254.1 mouse_genomes_project 3 134857357 134859083 - TEC TEC MGP_C3HHeJ_T0004212.1 MGP_C3HHeJ_G0003696.1 mouse_genomes_project 3 90063337 90068924 + Gm16048 antisense antisense MGP_C3HHeJ_T0059967.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28327649 28348370 + MGP_C3HHeJ_P0059967 Samd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059968.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28327696 28348378 + MGP_C3HHeJ_P0059968 Samd7 protein_coding protein_coding MGP_C3HHeJ_T0059969.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28332399 28346712 + MGP_C3HHeJ_P0059969 Samd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059970.1 MGP_C3HHeJ_G0026840.1 mouse_genomes_project 3 28337506 28338745 + Samd7 protein_coding retained_intron MGP_C3HHeJ_T0063449.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133166050 133193329 - MGP_C3HHeJ_P0063449 Sgms2 protein_coding protein_coding MGP_C3HHeJ_T0063450.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133190509 133193336 - MGP_C3HHeJ_P0063450 Sgms2 protein_coding protein_coding MGP_C3HHeJ_T0063451.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133190568 133253268 - MGP_C3HHeJ_P0063451 Sgms2 protein_coding protein_coding MGP_C3HHeJ_T0063452.1 MGP_C3HHeJ_G0027588.1 mouse_genomes_project 3 133190633 133254200 - Sgms2 protein_coding processed_transcript MGP_C3HHeJ_T0013964.1 MGP_C3HHeJ_G0012068.1 mouse_genomes_project 3 71609035 71609549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013985.1 MGP_C3HHeJ_G0012089.1 mouse_genomes_project 3 79618120 79618438 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062357.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697069 99782228 + MGP_C3HHeJ_P0062357 Wars2 protein_coding protein_coding MGP_C3HHeJ_T0062358.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697111 99779300 + MGP_C3HHeJ_P0062358 Wars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062359.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697132 99798549 + MGP_C3HHeJ_P0062359 Wars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062360.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697135 99776698 + MGP_C3HHeJ_P0062360 Wars2 protein_coding protein_coding MGP_C3HHeJ_T0062361.1 MGP_C3HHeJ_G0027363.1 mouse_genomes_project 3 99697204 99764764 + Wars2 protein_coding retained_intron MGP_C3HHeJ_T0063595.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319464 139411948 + MGP_C3HHeJ_P0063595 Emcn protein_coding protein_coding MGP_C3HHeJ_T0063596.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319487 139400985 + Emcn protein_coding retained_intron MGP_C3HHeJ_T0063597.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319540 139410832 + MGP_C3HHeJ_P0063597 Emcn protein_coding protein_coding MGP_C3HHeJ_T0063598.1 MGP_C3HHeJ_G0027613.1 mouse_genomes_project 3 139319571 139407107 + MGP_C3HHeJ_P0063598 Emcn protein_coding protein_coding MGP_C3HHeJ_T0007693.1 MGP_C3HHeJ_G0006285.1 mouse_genomes_project 3 153877545 153881817 + Gm42949 lincRNA lincRNA MGP_C3HHeJ_T0063089.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121188791 121254689 - MGP_C3HHeJ_P0063089 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063090.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121188791 121254277 - MGP_C3HHeJ_P0063090 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063091.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190370 121254123 - MGP_C3HHeJ_P0063091 Ptbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063092.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190395 121196202 - MGP_C3HHeJ_P0063092 Ptbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063093.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190434 121211598 - Ptbp2 protein_coding retained_intron MGP_C3HHeJ_T0063094.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121190859 121194449 - Ptbp2 protein_coding retained_intron MGP_C3HHeJ_T0063095.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121194168 121211229 - MGP_C3HHeJ_P0063095 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063096.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121209440 121213487 - Ptbp2 protein_coding retained_intron MGP_C3HHeJ_T0063097.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121217354 121254175 - MGP_C3HHeJ_P0063097 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0063098.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121218630 121255349 - Ptbp2 protein_coding processed_transcript MGP_C3HHeJ_T0063099.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121231753 121255351 - Ptbp2 protein_coding processed_transcript MGP_C3HHeJ_T0063100.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121231758 121254576 - Ptbp2 protein_coding processed_transcript MGP_C3HHeJ_T0063101.1 MGP_C3HHeJ_G0027527.1 mouse_genomes_project 3 121231760 121254196 - MGP_C3HHeJ_P0063101 Ptbp2 protein_coding protein_coding MGP_C3HHeJ_T0014207.1 MGP_C3HHeJ_G0012311.1 mouse_genomes_project 3 151655736 151656195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061805.1 MGP_C3HHeJ_G0027230.1 mouse_genomes_project 3 92640571 92642261 - MGP_C3HHeJ_P0061805 Lce1i protein_coding protein_coding MGP_C3HHeJ_T0001301.1 MGP_C3HHeJ_G0001233.1 mouse_genomes_project 3 129396234 129398594 - TEC TEC MGP_C3HHeJ_T0062455.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103674415 103700310 - MGP_C3HHeJ_P0062455 Nr1h5 protein_coding protein_coding MGP_C3HHeJ_T0062456.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062456 Nr1h5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062457.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062457 Nr1h5 protein_coding protein_coding MGP_C3HHeJ_T0062458.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062458 Nr1h5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062459.1 MGP_C3HHeJ_G0027387.1 mouse_genomes_project 3 103675627 103694619 - MGP_C3HHeJ_P0062459 Nr1h5 protein_coding protein_coding MGP_C3HHeJ_T0001165.1 MGP_C3HHeJ_G0001098.1 mouse_genomes_project 3 50104499 50107115 - TEC TEC MGP_C3HHeJ_T0007643.1 MGP_C3HHeJ_G0006248.1 mouse_genomes_project 3 141821341 141827291 - lincRNA lincRNA MGP_C3HHeJ_T0098437.1 MGP_C3HHeJ_G0036642.1 mouse_genomes_project 3 104870889 104872033 - Gm42696 sense_intronic sense_intronic MGP_C3HHeJ_T0062666.1 MGP_C3HHeJ_G0027429.1 mouse_genomes_project 3 106878165 106896243 - MGP_C3HHeJ_P0062666 Pifo protein_coding protein_coding MGP_C3HHeJ_T0062667.1 MGP_C3HHeJ_G0027429.1 mouse_genomes_project 3 106878174 106882673 - MGP_C3HHeJ_P0062667 Pifo protein_coding protein_coding MGP_C3HHeJ_T0063140.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123279219 123339728 - MGP_C3HHeJ_P0063140 Abcd3 protein_coding protein_coding MGP_C3HHeJ_T0063141.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123279352 123339864 - MGP_C3HHeJ_P0063141 Abcd3 protein_coding protein_coding MGP_C3HHeJ_T0063142.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123280201 123339728 - MGP_C3HHeJ_P0063142 Abcd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063143.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123288576 123291063 - Abcd3 protein_coding retained_intron MGP_C3HHeJ_T0063144.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123307997 123339471 - Abcd3 protein_coding processed_transcript MGP_C3HHeJ_T0063145.1 MGP_C3HHeJ_G0027535.1 mouse_genomes_project 3 123320550 123339759 - Abcd3 protein_coding retained_intron MGP_C3HHeJ_T0004184.1 MGP_C3HHeJ_G0003676.1 mouse_genomes_project 3 64137306 64161850 - A730090N16Rik antisense antisense MGP_C3HHeJ_T0001343.1 MGP_C3HHeJ_G0001274.1 mouse_genomes_project 3 154759145 154760260 + TEC TEC MGP_C3HHeJ_T0098449.1 MGP_C3HHeJ_G0036654.1 mouse_genomes_project 3 105329720 105332008 - A530041M06Rik sense_intronic sense_intronic MGP_C3HHeJ_T0062189.1 MGP_C3HHeJ_G0027312.1 mouse_genomes_project 3 96451478 96453380 - MGP_C3HHeJ_P0062189 Bola1 protein_coding protein_coding MGP_C3HHeJ_T0062190.1 MGP_C3HHeJ_G0027312.1 mouse_genomes_project 3 96451478 96452477 - MGP_C3HHeJ_P0062190 Bola1 protein_coding protein_coding MGP_C3HHeJ_T0062191.1 MGP_C3HHeJ_G0027312.1 mouse_genomes_project 3 96451753 96469936 - MGP_C3HHeJ_P0062191 Bola1 protein_coding protein_coding MGP_C3HHeJ_T0014028.1 MGP_C3HHeJ_G0012132.1 mouse_genomes_project 3 95528593 95528787 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013901.1 MGP_C3HHeJ_G0012005.1 mouse_genomes_project 3 55634885 55635514 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062445.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103499153 103503560 - Tshb protein_coding retained_intron MGP_C3HHeJ_T0062446.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501086 103506054 - MGP_C3HHeJ_P0062446 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062447.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501086 103506014 - MGP_C3HHeJ_P0062447 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062448.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501095 103506058 - MGP_C3HHeJ_P0062448 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062449.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501107 103506014 - MGP_C3HHeJ_P0062449 Tshb protein_coding protein_coding MGP_C3HHeJ_T0062450.1 MGP_C3HHeJ_G0027385.1 mouse_genomes_project 3 103501134 103505823 - MGP_C3HHeJ_P0062450 Tshb protein_coding protein_coding MGP_C3HHeJ_T0100548.1 MGP_C3HHeJ_G0038742.1 mouse_genomes_project 3 78172509 78172641 + Gm23440 snoRNA snoRNA MGP_C3HHeJ_T0007514.1 MGP_C3HHeJ_G0006148.1 mouse_genomes_project 3 85562059 85564832 + Gm37933 lincRNA lincRNA MGP_C3HHeJ_T0062490.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103820895 103846454 + MGP_C3HHeJ_P0062490 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0062491.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103820903 103846448 + MGP_C3HHeJ_P0062491 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0062492.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103820934 103835184 + MGP_C3HHeJ_P0062492 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0062493.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103840699 103841727 + Ampd1 protein_coding retained_intron MGP_C3HHeJ_T0062494.1 MGP_C3HHeJ_G0027391.1 mouse_genomes_project 3 103841370 103846440 + MGP_C3HHeJ_P0062494 Ampd1 protein_coding protein_coding MGP_C3HHeJ_T0001279.1 MGP_C3HHeJ_G0001211.1 mouse_genomes_project 3 125278364 125281400 - TEC TEC MGP_C3HHeJ_T0001256.1 MGP_C3HHeJ_G0001188.1 mouse_genomes_project 3 117418552 117419575 + TEC TEC MGP_C3HHeJ_T0011455.1 MGP_C3HHeJ_G0009588.1 mouse_genomes_project 3 126416279 126416577 + Gm23673 misc_RNA misc_RNA MGP_C3HHeJ_T0007695.1 MGP_C3HHeJ_G0006287.1 mouse_genomes_project 3 154570982 154575417 + Gm43619 lincRNA lincRNA MGP_C3HHeJ_T0062734.1 MGP_C3HHeJ_G0027450.1 mouse_genomes_project 3 108398004 108419271 - MGP_C3HHeJ_P0062734 Kcnc4 protein_coding protein_coding MGP_C3HHeJ_T0001128.1 MGP_C3HHeJ_G0001062.1 mouse_genomes_project 3 38705819 38706753 - TEC TEC MGP_C3HHeJ_T0060228.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249510 35264816 - MGP_C3HHeJ_P0060228 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060229.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249510 35264138 - MGP_C3HHeJ_P0060229 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060230.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249586 35264148 - MGP_C3HHeJ_P0060230 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060231.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249675 35255241 - Nudt6 protein_coding processed_transcript MGP_C3HHeJ_T0060232.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249693 35264128 - MGP_C3HHeJ_P0060232 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060233.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35249952 35264131 - MGP_C3HHeJ_P0060233 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0060234.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35254071 35264115 - MGP_C3HHeJ_P0060234 Nudt6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060235.1 MGP_C3HHeJ_G0026886.1 mouse_genomes_project 3 35256957 35264124 - MGP_C3HHeJ_P0060235 Nudt6 protein_coding protein_coding MGP_C3HHeJ_T0100584.1 MGP_C3HHeJ_G0038778.1 mouse_genomes_project 3 135398147 135398279 - Gm23011 snoRNA snoRNA MGP_C3HHeJ_T0098432.1 MGP_C3HHeJ_G0036637.1 mouse_genomes_project 3 104386095 104387355 + Gm43066 sense_intronic sense_intronic MGP_C3HHeJ_T0062466.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751035 103792014 + MGP_C3HHeJ_P0062466 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062467.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751069 103791821 + MGP_C3HHeJ_P0062467 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062468.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751075 103792016 + MGP_C3HHeJ_P0062468 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062469.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751082 103791530 + MGP_C3HHeJ_P0062469 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062470.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103751126 103791634 + MGP_C3HHeJ_P0062470 Csde1 protein_coding protein_coding MGP_C3HHeJ_T0062471.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103759105 103775975 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062472.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103759198 103761002 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062473.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103760268 103777103 + Csde1 protein_coding processed_transcript MGP_C3HHeJ_T0062474.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103772957 103777858 + Csde1 protein_coding processed_transcript MGP_C3HHeJ_T0062475.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103773216 103777282 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062476.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103773245 103780632 + MGP_C3HHeJ_P0062476 Csde1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062477.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103776410 103791616 + MGP_C3HHeJ_P0062477 Csde1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062478.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103776759 103777460 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062479.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103783829 103784901 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0062480.1 MGP_C3HHeJ_G0027389.1 mouse_genomes_project 3 103789882 103790961 + Csde1 protein_coding retained_intron MGP_C3HHeJ_T0014126.1 MGP_C3HHeJ_G0012230.1 mouse_genomes_project 3 124199115 124199623 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099257.1 MGP_C3HHeJ_G0037451.1 mouse_genomes_project 3 58609616 58609722 - Gm24382 snRNA snRNA MGP_C3HHeJ_T0004196.1 MGP_C3HHeJ_G0003685.1 mouse_genomes_project 3 84690665 84709740 + 1700036G14Rik antisense antisense MGP_C3HHeJ_T0001170.1 MGP_C3HHeJ_G0001102.1 mouse_genomes_project 3 50222515 50225807 - TEC TEC MGP_C3HHeJ_T0010418.1 MGP_C3HHeJ_G0008551.1 mouse_genomes_project 3 25949266 25949340 + Mir466q miRNA miRNA MGP_C3HHeJ_T0011433.1 MGP_C3HHeJ_G0009566.1 mouse_genomes_project 3 6691221 6691530 + Gm22604 misc_RNA misc_RNA MGP_C3HHeJ_T0061815.1 MGP_C3HHeJ_G0027240.1 mouse_genomes_project 3 92888328 92889811 - MGP_C3HHeJ_P0061815 Crct1 protein_coding protein_coding MGP_C3HHeJ_T0061816.1 MGP_C3HHeJ_G0027240.1 mouse_genomes_project 3 92888642 92889793 - MGP_C3HHeJ_P0061816 Crct1 protein_coding protein_coding MGP_C3HHeJ_T0099267.1 MGP_C3HHeJ_G0037461.1 mouse_genomes_project 3 85320192 85320299 - Gm26204 snRNA snRNA MGP_C3HHeJ_T0101944.1 MGP_C3HHeJ_G0039909.1 mouse_genomes_project 3 58058068 58083878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007639.1 MGP_C3HHeJ_G0006244.1 mouse_genomes_project 3 139767242 139776021 - Gm31678 lincRNA lincRNA MGP_C3HHeJ_T0062768.1 MGP_C3HHeJ_G0027458.1 mouse_genomes_project 3 108848682 108866150 + MGP_C3HHeJ_P0062768 Eps8l3 protein_coding protein_coding MGP_C3HHeJ_T0062769.1 MGP_C3HHeJ_G0027458.1 mouse_genomes_project 3 108848697 108852707 + Eps8l3 protein_coding processed_transcript MGP_C3HHeJ_T0062770.1 MGP_C3HHeJ_G0027458.1 mouse_genomes_project 3 108848715 108853083 + MGP_C3HHeJ_P0062770 Eps8l3 protein_coding protein_coding MGP_C3HHeJ_T0013910.1 MGP_C3HHeJ_G0012014.1 mouse_genomes_project 3 56819829 56820246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063937.1 MGP_C3HHeJ_G0027685.1 mouse_genomes_project 3 154326839 154330979 - MGP_C3HHeJ_P0063937 Ifi44l protein_coding protein_coding MGP_C3HHeJ_T0099293.1 MGP_C3HHeJ_G0037487.1 mouse_genomes_project 3 103686675 103686840 - Gm22826 snRNA snRNA MGP_C3HHeJ_T0100525.1 MGP_C3HHeJ_G0038719.1 mouse_genomes_project 3 24580640 24580754 + Gm25152 snoRNA snoRNA MGP_C3HHeJ_T0063869.1 MGP_C3HHeJ_G0027674.1 mouse_genomes_project 3 148857999 148863765 + MGP_C3HHeJ_P0063869 Gng5 protein_coding protein_coding MGP_C3HHeJ_T0063870.1 MGP_C3HHeJ_G0027674.1 mouse_genomes_project 3 148858082 148863740 + MGP_C3HHeJ_P0063870 Gng5 protein_coding protein_coding MGP_C3HHeJ_T0063871.1 MGP_C3HHeJ_G0027674.1 mouse_genomes_project 3 148858301 148863741 + MGP_C3HHeJ_P0063871 Gng5 protein_coding protein_coding MGP_C3HHeJ_T0014115.1 MGP_C3HHeJ_G0012219.1 mouse_genomes_project 3 119262115 119262557 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013975.1 MGP_C3HHeJ_G0012079.1 mouse_genomes_project 3 77144207 77145620 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063111.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693290 122787405 - MGP_C3HHeJ_P0063111 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063112.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693537 122730153 - MGP_C3HHeJ_P0063112 Tmem56 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063113.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693537 122756887 - MGP_C3HHeJ_P0063113 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063114.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122693537 122756861 - MGP_C3HHeJ_P0063114 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063115.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122697567 122746402 - MGP_C3HHeJ_P0063115 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063116.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122721103 122787405 - MGP_C3HHeJ_P0063116 Tmem56 protein_coding protein_coding MGP_C3HHeJ_T0063117.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122721147 122724303 - Tmem56 protein_coding retained_intron MGP_C3HHeJ_T0063118.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122728451 122787302 - Tmem56 protein_coding processed_transcript MGP_C3HHeJ_T0063119.1 MGP_C3HHeJ_G0027529.1 mouse_genomes_project 3 122728504 122787309 - Tmem56 protein_coding processed_transcript MGP_C3HHeJ_T0059765.1 MGP_C3HHeJ_G0026801.1 mouse_genomes_project 3 15349214 15528873 - MGP_C3HHeJ_P0059765 Cyp7b1 protein_coding protein_coding MGP_C3HHeJ_T0014220.1 MGP_C3HHeJ_G0012324.1 mouse_genomes_project 3 160685763 160686173 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014105.1 MGP_C3HHeJ_G0012209.1 mouse_genomes_project 3 116408957 116409378 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013829.1 MGP_C3HHeJ_G0011933.1 mouse_genomes_project 3 31919989 31920884 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014180.1 MGP_C3HHeJ_G0012284.1 mouse_genomes_project 3 140615419 140616736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007498.1 MGP_C3HHeJ_G0006133.1 mouse_genomes_project 3 78778293 78783110 + 4930589L23Rik lincRNA lincRNA MGP_C3HHeJ_T0007358.1 MGP_C3HHeJ_G0006030.1 mouse_genomes_project 3 2223996 2228497 + Gm17308 lincRNA lincRNA MGP_C3HHeJ_T0063755.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357802 146372047 - MGP_C3HHeJ_P0063755 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063756.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357802 146374812 - MGP_C3HHeJ_P0063756 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063757.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357807 146374812 - MGP_C3HHeJ_P0063757 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063758.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146357904 146371983 - MGP_C3HHeJ_P0063758 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063759.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146358334 146364091 - Lmo4 protein_coding retained_intron MGP_C3HHeJ_T0063760.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146363260 146372567 - MGP_C3HHeJ_P0063760 Lmo4 protein_coding protein_coding MGP_C3HHeJ_T0063761.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146370433 146374772 - Lmo4 protein_coding retained_intron MGP_C3HHeJ_T0063762.1 MGP_C3HHeJ_G0027648.1 mouse_genomes_project 3 146371273 146371951 - Lmo4 protein_coding retained_intron MGP_C3HHeJ_T0061068.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85637779 86203375 + MGP_C3HHeJ_P0061068 Lrba protein_coding protein_coding MGP_C3HHeJ_T0061069.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85637779 86197610 + MGP_C3HHeJ_P0061069 Lrba protein_coding protein_coding MGP_C3HHeJ_T0061070.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85637779 86166902 + MGP_C3HHeJ_P0061070 Lrba protein_coding protein_coding MGP_C3HHeJ_T0061071.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85766809 85768192 + Lrba protein_coding retained_intron MGP_C3HHeJ_T0061072.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85957336 86027151 + Lrba protein_coding retained_intron MGP_C3HHeJ_T0061075.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85962947 86041377 + Lrba protein_coding retained_intron MGP_C3HHeJ_T0061076.1 MGP_C3HHeJ_G0027071.1 mouse_genomes_project 3 85964409 86203378 + MGP_C3HHeJ_P0061076 Lrba protein_coding protein_coding MGP_C3HHeJ_T0010414.1 MGP_C3HHeJ_G0008547.1 mouse_genomes_project 3 17558481 17558551 - Mir7007 miRNA miRNA MGP_C3HHeJ_T0013991.1 MGP_C3HHeJ_G0012095.1 mouse_genomes_project 3 83901100 83901685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013835.1 MGP_C3HHeJ_G0011939.1 mouse_genomes_project 3 34214665 34215163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101947.1 MGP_C3HHeJ_G0039912.1 mouse_genomes_project 3 62837149 62861341 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001250.1 MGP_C3HHeJ_G0001182.1 mouse_genomes_project 3 109284883 109292384 + TEC TEC MGP_C3HHeJ_T0010434.1 MGP_C3HHeJ_G0008567.1 mouse_genomes_project 3 67853929 67854024 + Mir16-2 miRNA miRNA MGP_C3HHeJ_T0063079.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119149528 119242041 - MGP_C3HHeJ_P0063079 Snx7 protein_coding protein_coding MGP_C3HHeJ_T0063080.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119149833 119216126 - MGP_C3HHeJ_P0063080 Snx7 protein_coding protein_coding MGP_C3HHeJ_T0063081.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119149959 119241957 - MGP_C3HHeJ_P0063081 Snx7 protein_coding protein_coding MGP_C3HHeJ_T0063082.1 MGP_C3HHeJ_G0027525.1 mouse_genomes_project 3 119195565 119199758 - Snx7 protein_coding retained_intron MGP_C3HHeJ_T0061077.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206836 86347393 - MGP_C3HHeJ_P0061077 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061078.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206838 86347866 - MGP_C3HHeJ_P0061078 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061079.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206838 86347202 - MGP_C3HHeJ_P0061079 Dclk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061080.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86206844 86347349 - MGP_C3HHeJ_P0061080 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061081.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86208535 86347184 - MGP_C3HHeJ_P0061081 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0061082.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86208564 86213639 - Dclk2 protein_coding processed_transcript MGP_C3HHeJ_T0061083.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86208672 86220484 - Dclk2 protein_coding processed_transcript MGP_C3HHeJ_T0061084.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86210669 86219336 - Dclk2 protein_coding processed_transcript MGP_C3HHeJ_T0061085.1 MGP_C3HHeJ_G0027073.1 mouse_genomes_project 3 86220244 86347388 - MGP_C3HHeJ_P0061085 Dclk2 protein_coding protein_coding MGP_C3HHeJ_T0100589.1 MGP_C3HHeJ_G0038783.1 mouse_genomes_project 3 156352848 156352964 + Gm22206 snoRNA snoRNA MGP_C3HHeJ_T0099272.1 MGP_C3HHeJ_G0037466.1 mouse_genomes_project 3 85801762 85801869 + Gm25039 snRNA snRNA MGP_C3HHeJ_T0060544.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55649277 55669626 - MGP_C3HHeJ_P0060544 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060545.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55649277 55658556 - MGP_C3HHeJ_P0060545 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060546.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55651150 55669678 - MGP_C3HHeJ_P0060546 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060547.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55651182 55658219 - Tm4sf1 protein_coding processed_transcript MGP_C3HHeJ_T0060548.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55656449 55658792 - MGP_C3HHeJ_P0060548 Tm4sf1 protein_coding protein_coding MGP_C3HHeJ_T0060549.1 MGP_C3HHeJ_G0026943.1 mouse_genomes_project 3 55656485 55657370 - Tm4sf1 protein_coding retained_intron MGP_C3HHeJ_T0061655.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808822 89809602 - MGP_C3HHeJ_P0061655 protein_coding protein_coding MGP_C3HHeJ_T0061656.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808963 89809916 - MGP_C3HHeJ_P0061656 protein_coding protein_coding MGP_C3HHeJ_T0061657.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808967 89809934 - protein_coding retained_intron MGP_C3HHeJ_T0061658.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808967 89809935 - protein_coding retained_intron MGP_C3HHeJ_T0061659.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808971 89809924 - protein_coding retained_intron MGP_C3HHeJ_T0061660.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89808971 89809949 - MGP_C3HHeJ_P0061660 protein_coding protein_coding MGP_C3HHeJ_T0061661.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89809127 89809947 - protein_coding retained_intron MGP_C3HHeJ_T0061662.1 MGP_C3HHeJ_G0027170.1 mouse_genomes_project 3 89809359 89809946 - protein_coding retained_intron MGP_C3HHeJ_T0062588.1 MGP_C3HHeJ_G0027409.1 mouse_genomes_project 3 105474765 105496258 + MGP_C3HHeJ_P0062588 Slc16a1 protein_coding protein_coding MGP_C3HHeJ_T0001359.1 MGP_C3HHeJ_G0001290.1 mouse_genomes_project 3 159753799 159756974 + TEC TEC MGP_C3HHeJ_T0099305.1 MGP_C3HHeJ_G0037499.1 mouse_genomes_project 3 125968735 125968845 + Gm22575 snRNA snRNA MGP_C3HHeJ_T0101962.1 MGP_C3HHeJ_G0039927.1 mouse_genomes_project 3 90653090 90660333 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004292.1 MGP_C3HHeJ_G0003745.1 mouse_genomes_project 3 128049525 128055927 - Gm17225 antisense antisense MGP_C3HHeJ_T0013945.1 MGP_C3HHeJ_G0012049.1 mouse_genomes_project 3 67699493 67700706 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060005.1 MGP_C3HHeJ_G0026846.1 mouse_genomes_project 3 28748320 28771208 + MGP_C3HHeJ_P0060005 Cldn11 protein_coding protein_coding MGP_C3HHeJ_T0062798.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059174 109070668 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062799.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059174 109071740 - MGP_C3HHeJ_P0062799 Ampd2 protein_coding protein_coding MGP_C3HHeJ_T0062800.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059176 109071764 - MGP_C3HHeJ_P0062800 Ampd2 protein_coding protein_coding MGP_C3HHeJ_T0062801.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059199 109070512 - MGP_C3HHeJ_P0062801 Ampd2 protein_coding protein_coding MGP_C3HHeJ_T0062802.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109059856 109060583 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062803.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109060476 109061545 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062804.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109061725 109063008 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062805.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109063580 109064822 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062806.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109063744 109065731 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0062807.1 MGP_C3HHeJ_G0027466.1 mouse_genomes_project 3 109065034 109070508 - Ampd2 protein_coding retained_intron MGP_C3HHeJ_T0010420.1 MGP_C3HHeJ_G0008553.1 mouse_genomes_project 3 27210360 27210468 + Mir21b miRNA miRNA MGP_C3HHeJ_T0001131.1 MGP_C3HHeJ_G0001065.1 mouse_genomes_project 3 39549009 39550694 - TEC TEC MGP_C3HHeJ_T0014195.1 MGP_C3HHeJ_G0012299.1 mouse_genomes_project 3 146028559 146029384 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063256.1 MGP_C3HHeJ_G0027557.1 mouse_genomes_project 3 127460242 127533694 - MGP_C3HHeJ_P0063256 Ugt8a protein_coding protein_coding MGP_C3HHeJ_T0063257.1 MGP_C3HHeJ_G0027557.1 mouse_genomes_project 3 127460477 127509983 - MGP_C3HHeJ_P0063257 Ugt8a protein_coding protein_coding MGP_C3HHeJ_T0063258.1 MGP_C3HHeJ_G0027557.1 mouse_genomes_project 3 127508363 127533626 - Ugt8a protein_coding retained_intron MGP_C3HHeJ_T0060671.1 MGP_C3HHeJ_G0026976.1 mouse_genomes_project 3 61064909 61149279 - MGP_C3HHeJ_P0060671 Gpr149 protein_coding protein_coding MGP_C3HHeJ_T0060672.1 MGP_C3HHeJ_G0026976.1 mouse_genomes_project 3 61134521 61144577 - Gpr149 protein_coding retained_intron MGP_C3HHeJ_T0059795.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273878 17326797 + MGP_C3HHeJ_P0059795 Cp protein_coding protein_coding MGP_C3HHeJ_T0059796.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273878 17311363 + MGP_C3HHeJ_P0059796 Cp protein_coding protein_coding MGP_C3HHeJ_T0059797.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273885 17286569 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059798.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273893 17328338 + MGP_C3HHeJ_P0059798 Cp protein_coding protein_coding MGP_C3HHeJ_T0059799.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17273935 17326797 + MGP_C3HHeJ_P0059799 Cp protein_coding protein_coding MGP_C3HHeJ_T0059800.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17274043 17286237 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059801.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17274108 17310750 + MGP_C3HHeJ_P0059801 Cp protein_coding protein_coding MGP_C3HHeJ_T0059802.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17287073 17306276 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059803.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17288116 17292285 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059804.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17291991 17297952 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059805.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17297838 17304607 + MGP_C3HHeJ_P0059805 Cp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059806.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17298638 17300698 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059807.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17299213 17303114 + MGP_C3HHeJ_P0059807 Cp protein_coding protein_coding MGP_C3HHeJ_T0059808.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17302822 17310807 + MGP_C3HHeJ_P0059808 Cp protein_coding protein_coding MGP_C3HHeJ_T0059809.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17304755 17306838 + Cp protein_coding retained_intron MGP_C3HHeJ_T0059810.1 MGP_C3HHeJ_G0026810.1 mouse_genomes_project 3 17306362 17325546 + MGP_C3HHeJ_P0059810 Cp protein_coding protein_coding MGP_C3HHeJ_T0017773.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119840130 119843766 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017774.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843603 119933431 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017775.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843728 119935515 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017776.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843739 119891008 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017777.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119843772 119949426 + Gm26871 processed_transcript lincRNA MGP_C3HHeJ_T0017778.1 MGP_C3HHeJ_G0015283.1 mouse_genomes_project 3 119875429 119878467 + Gm26871 processed_transcript retained_intron MGP_C3HHeJ_T0061594.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580736 - MGP_C3HHeJ_P0061594 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061595.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580767 - MGP_C3HHeJ_P0061595 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061596.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580048 - MGP_C3HHeJ_P0061596 Hax1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061597.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580459 - MGP_C3HHeJ_P0061597 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061598.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576511 89580690 - MGP_C3HHeJ_P0061598 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0061599.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576711 89580756 - Hax1 protein_coding retained_intron MGP_C3HHeJ_T0061600.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89576771 89578406 - Hax1 protein_coding retained_intron MGP_C3HHeJ_T0061601.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89577963 89580750 - MGP_C3HHeJ_P0061601 Hax1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061602.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89579589 89580850 - Hax1 protein_coding retained_intron MGP_C3HHeJ_T0061603.1 MGP_C3HHeJ_G0027165.1 mouse_genomes_project 3 89579839 89580432 - MGP_C3HHeJ_P0061603 Hax1 protein_coding protein_coding MGP_C3HHeJ_T0063694.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531116 143909925 + MGP_C3HHeJ_P0063694 Unc5c protein_coding protein_coding MGP_C3HHeJ_T0063695.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531474 143904472 + MGP_C3HHeJ_P0063695 Unc5c protein_coding protein_coding MGP_C3HHeJ_T0063696.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143734985 + Unc5c protein_coding processed_transcript MGP_C3HHeJ_T0063697.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143536839 + Unc5c protein_coding retained_intron MGP_C3HHeJ_T0063698.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143756854 + Unc5c protein_coding retained_intron MGP_C3HHeJ_T0063699.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531499 143904424 + MGP_C3HHeJ_P0063699 Unc5c protein_coding protein_coding MGP_C3HHeJ_T0063700.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143531571 143905541 + MGP_C3HHeJ_P0063700 Unc5c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063701.1 MGP_C3HHeJ_G0027637.1 mouse_genomes_project 3 143864900 143867050 + Unc5c protein_coding retained_intron MGP_C3HHeJ_T0060553.1 MGP_C3HHeJ_G0026946.1 mouse_genomes_project 3 56017309 56026351 - MGP_C3HHeJ_P0060553 Commd2 protein_coding protein_coding MGP_C3HHeJ_T0060554.1 MGP_C3HHeJ_G0026946.1 mouse_genomes_project 3 56019319 56026344 - MGP_C3HHeJ_P0060554 Commd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060555.1 MGP_C3HHeJ_G0026946.1 mouse_genomes_project 3 56025737 56026351 - Commd2 protein_coding retained_intron MGP_C3HHeJ_T0014148.1 MGP_C3HHeJ_G0012252.1 mouse_genomes_project 3 132667589 132668101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059683.1 MGP_C3HHeJ_G0026770.1 mouse_genomes_project 3 6713698 6902467 - MGP_C3HHeJ_P0059683 Zfp704 protein_coding protein_coding MGP_C3HHeJ_T0059684.1 MGP_C3HHeJ_G0026770.1 mouse_genomes_project 3 6725010 6856865 - MGP_C3HHeJ_P0059684 Zfp704 protein_coding protein_coding MGP_C3HHeJ_T0059685.1 MGP_C3HHeJ_G0026770.1 mouse_genomes_project 3 6725418 6727759 - Zfp704 protein_coding retained_intron MGP_C3HHeJ_T0007593.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122106338 122377213 - lincRNA lincRNA MGP_C3HHeJ_T0007594.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122194770 122377212 - lincRNA lincRNA MGP_C3HHeJ_T0007595.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122198543 122377194 - lincRNA lincRNA MGP_C3HHeJ_T0007596.1 MGP_C3HHeJ_G0006208.1 mouse_genomes_project 3 122271227 122377171 - lincRNA lincRNA MGP_C3HHeJ_T0007381.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15065379 15076607 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007382.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15065415 15076256 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007383.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15069370 15070856 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007384.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15069378 15076312 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007385.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15069395 15076225 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007386.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15070346 15086241 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0007387.1 MGP_C3HHeJ_G0006046.1 mouse_genomes_project 3 15071194 15076312 + Mir124-2hg lincRNA lincRNA MGP_C3HHeJ_T0001249.1 MGP_C3HHeJ_G0001181.1 mouse_genomes_project 3 108857377 108859260 + TEC TEC MGP_C3HHeJ_T0013862.1 MGP_C3HHeJ_G0011966.1 mouse_genomes_project 3 41328205 41329369 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063232.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121467 125268138 - MGP_C3HHeJ_P0063232 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063233.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121473 125284280 - MGP_C3HHeJ_P0063233 Ndst3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063234.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121475 125284280 - MGP_C3HHeJ_P0063234 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063235.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125121476 125268222 - MGP_C3HHeJ_P0063235 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063236.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125123865 125214540 - MGP_C3HHeJ_P0063236 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063237.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125123994 125283708 - MGP_C3HHeJ_P0063237 Ndst3 protein_coding protein_coding MGP_C3HHeJ_T0063238.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125148321 125268407 - Ndst3 protein_coding retained_intron MGP_C3HHeJ_T0063239.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125152156 125155616 - Ndst3 protein_coding retained_intron MGP_C3HHeJ_T0063240.1 MGP_C3HHeJ_G0027552.1 mouse_genomes_project 3 125152327 125170214 - Ndst3 protein_coding processed_transcript MGP_C3HHeJ_T0014065.1 MGP_C3HHeJ_G0012169.1 mouse_genomes_project 3 103997134 103997423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062139.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96121524 96129572 - MGP_C3HHeJ_P0062139 BC028528 protein_coding protein_coding MGP_C3HHeJ_T0062140.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96121528 96129522 - MGP_C3HHeJ_P0062140 BC028528 protein_coding protein_coding MGP_C3HHeJ_T0062141.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96122541 96129497 - MGP_C3HHeJ_P0062141 BC028528 protein_coding protein_coding MGP_C3HHeJ_T0062142.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96125525 96129518 - BC028528 protein_coding processed_transcript MGP_C3HHeJ_T0062143.1 MGP_C3HHeJ_G0027302.1 mouse_genomes_project 3 96126012 96129548 - BC028528 protein_coding retained_intron MGP_C3HHeJ_T0013851.1 MGP_C3HHeJ_G0011955.1 mouse_genomes_project 3 36451804 36452339 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001284.1 MGP_C3HHeJ_G0001216.1 mouse_genomes_project 3 128227424 128231929 + TEC TEC MGP_C3HHeJ_T0060310.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39451420 39517104 + MGP_C3HHeJ_P0060310 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060311.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39451430 39493248 + MGP_C3HHeJ_P0060311 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060312.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39451449 39496087 + MGP_C3HHeJ_P0060312 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060313.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39462266 39517099 + MGP_C3HHeJ_P0060313 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060314.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39462308 39491201 + Jade1 protein_coding processed_transcript MGP_C3HHeJ_T0060315.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39462504 39514299 + MGP_C3HHeJ_P0060315 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060316.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39464504 39516352 + MGP_C3HHeJ_P0060316 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060317.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39464548 39491199 + Jade1 protein_coding processed_transcript MGP_C3HHeJ_T0060318.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39464570 39506936 + MGP_C3HHeJ_P0060318 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060319.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39491139 39499638 + Jade1 protein_coding retained_intron MGP_C3HHeJ_T0060320.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39493239 39504805 + Jade1 protein_coding retained_intron MGP_C3HHeJ_T0060321.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39496133 39505041 + MGP_C3HHeJ_P0060321 Jade1 protein_coding protein_coding MGP_C3HHeJ_T0060322.1 MGP_C3HHeJ_G0026901.1 mouse_genomes_project 3 39502670 39505048 + Jade1 protein_coding processed_transcript MGP_C3HHeJ_T0060388.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49616487 49676901 + Naa15 protein_coding processed_transcript MGP_C3HHeJ_T0060389.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49616514 49682688 + MGP_C3HHeJ_P0060389 Naa15 protein_coding protein_coding MGP_C3HHeJ_T0060390.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49616805 49648219 + MGP_C3HHeJ_P0060390 Naa15 protein_coding protein_coding MGP_C3HHeJ_T0060391.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49646094 49649247 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0060392.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49647083 49653904 + MGP_C3HHeJ_P0060392 Naa15 protein_coding protein_coding MGP_C3HHeJ_T0060393.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49665081 49668653 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0060394.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49666070 49668389 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0060395.1 MGP_C3HHeJ_G0026912.1 mouse_genomes_project 3 49674476 49677549 + Naa15 protein_coding retained_intron MGP_C3HHeJ_T0001307.1 MGP_C3HHeJ_G0001238.1 mouse_genomes_project 3 130973036 130975621 - TEC TEC MGP_C3HHeJ_T0004210.1 MGP_C3HHeJ_G0003694.1 mouse_genomes_project 3 89484364 89485502 + Gm42809 antisense antisense MGP_C3HHeJ_T0061797.1 MGP_C3HHeJ_G0027222.1 mouse_genomes_project 3 92520233 92521570 - MGP_C3HHeJ_P0061797 Lce1b protein_coding protein_coding MGP_C3HHeJ_T0062401.1 MGP_C3HHeJ_G0027374.1 mouse_genomes_project 3 101685388 101761210 - MGP_C3HHeJ_P0062401 Ptgfrn protein_coding protein_coding MGP_C3HHeJ_T0062402.1 MGP_C3HHeJ_G0027374.1 mouse_genomes_project 3 101708017 101721640 - Ptgfrn protein_coding processed_transcript MGP_C3HHeJ_T0062403.1 MGP_C3HHeJ_G0027374.1 mouse_genomes_project 3 101722126 101726912 - Ptgfrn protein_coding retained_intron MGP_C3HHeJ_T0014184.1 MGP_C3HHeJ_G0012288.1 mouse_genomes_project 3 141449453 141449897 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001077.1 MGP_C3HHeJ_G0001011.1 mouse_genomes_project 3 6784660 6788427 + TEC TEC MGP_C3HHeJ_T0007441.1 MGP_C3HHeJ_G0006092.1 mouse_genomes_project 3 39367488 39371797 - Gm42434 lincRNA lincRNA MGP_C3HHeJ_T0007442.1 MGP_C3HHeJ_G0006092.1 mouse_genomes_project 3 39371672 39372303 - Gm42434 lincRNA lincRNA MGP_C3HHeJ_T0061211.1 MGP_C3HHeJ_G0027103.1 mouse_genomes_project 3 87818000 87834272 - MGP_C3HHeJ_P0061211 Tsacc protein_coding protein_coding MGP_C3HHeJ_T0061212.1 MGP_C3HHeJ_G0027103.1 mouse_genomes_project 3 87818003 87834111 - MGP_C3HHeJ_P0061212 Tsacc protein_coding protein_coding MGP_C3HHeJ_T0013976.1 MGP_C3HHeJ_G0012080.1 mouse_genomes_project 3 77190834 77191275 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013864.1 MGP_C3HHeJ_G0011968.1 mouse_genomes_project 3 41886240 41886583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013786.1 MGP_C3HHeJ_G0011890.1 mouse_genomes_project 3 13351500 13351675 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062495.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103849337 103918067 + MGP_C3HHeJ_P0062495 Dennd2c protein_coding protein_coding MGP_C3HHeJ_T0062496.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103849393 103904787 + Dennd2c protein_coding retained_intron MGP_C3HHeJ_T0062497.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103874747 103918036 + MGP_C3HHeJ_P0062497 Dennd2c protein_coding protein_coding MGP_C3HHeJ_T0062498.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103888012 103916962 + Dennd2c protein_coding processed_transcript MGP_C3HHeJ_T0062499.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103888542 103918029 + Dennd2c protein_coding retained_intron MGP_C3HHeJ_T0062500.1 MGP_C3HHeJ_G0027392.1 mouse_genomes_project 3 103896678 103906840 + Dennd2c protein_coding retained_intron MGP_C3HHeJ_T0100528.1 MGP_C3HHeJ_G0038722.1 mouse_genomes_project 3 31682101 31682233 - Gm23175 snoRNA snoRNA MGP_C3HHeJ_T0064102.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157791439 157799920 - MGP_C3HHeJ_P0064102 Fpgt protein_coding protein_coding MGP_C3HHeJ_T0064103.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157794240 157799714 - Fpgt protein_coding processed_transcript MGP_C3HHeJ_T0064104.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157795549 157797041 - Fpgt protein_coding retained_intron MGP_C3HHeJ_T0064105.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157797464 157799885 - Fpgt protein_coding retained_intron MGP_C3HHeJ_T0064106.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157797841 157799072 - Fpgt protein_coding processed_transcript MGP_C3HHeJ_T0064107.1 MGP_C3HHeJ_G0027708.1 mouse_genomes_project 3 157797926 157799744 - Fpgt protein_coding processed_transcript MGP_C3HHeJ_T0013959.1 MGP_C3HHeJ_G0012063.1 mouse_genomes_project 3 70622696 70627282 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013935.1 MGP_C3HHeJ_G0012039.1 mouse_genomes_project 3 64958019 64958775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010469.1 MGP_C3HHeJ_G0008602.1 mouse_genomes_project 3 129214264 129214339 + Mir367 miRNA miRNA MGP_C3HHeJ_T0001108.1 MGP_C3HHeJ_G0001042.1 mouse_genomes_project 3 31785616 31786701 - TEC TEC MGP_C3HHeJ_T0062149.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96135983 96142902 - MGP_C3HHeJ_P0062149 Car14 protein_coding protein_coding MGP_C3HHeJ_T0062150.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96137955 96142896 - MGP_C3HHeJ_P0062150 Car14 protein_coding protein_coding MGP_C3HHeJ_T0062151.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96139727 96142895 - Car14 protein_coding retained_intron MGP_C3HHeJ_T0062152.1 MGP_C3HHeJ_G0027304.1 mouse_genomes_project 3 96140108 96141959 - Car14 protein_coding retained_intron MGP_C3HHeJ_T0004135.1 MGP_C3HHeJ_G0003640.1 mouse_genomes_project 3 26349972 26357940 - Gm33051 antisense antisense MGP_C3HHeJ_T0061122.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87237618 87259430 - MGP_C3HHeJ_P0061122 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061123.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238823 87259435 - MGP_C3HHeJ_P0061123 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061124.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238823 87316782 - MGP_C3HHeJ_P0061124 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061125.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238823 87316749 - MGP_C3HHeJ_P0061125 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061126.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238824 87252707 - Pear1 protein_coding retained_intron MGP_C3HHeJ_T0061127.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238824 87259425 - MGP_C3HHeJ_P0061127 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061128.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238824 87259431 - MGP_C3HHeJ_P0061128 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061129.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87238832 87244039 - Pear1 protein_coding retained_intron MGP_C3HHeJ_T0061130.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87239626 87259425 - MGP_C3HHeJ_P0061130 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061131.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87241185 87243668 - MGP_C3HHeJ_P0061131 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061132.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87242166 87246660 - MGP_C3HHeJ_P0061132 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061133.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87246358 87259425 - MGP_C3HHeJ_P0061133 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061134.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87247677 87259437 - Pear1 protein_coding retained_intron MGP_C3HHeJ_T0061135.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87248117 87259425 - MGP_C3HHeJ_P0061135 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061136.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87248130 87259425 - MGP_C3HHeJ_P0061136 Pear1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061137.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87248144 87259448 - MGP_C3HHeJ_P0061137 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0061138.1 MGP_C3HHeJ_G0027083.1 mouse_genomes_project 3 87249864 87259417 - MGP_C3HHeJ_P0061138 Pear1 protein_coding protein_coding MGP_C3HHeJ_T0017732.1 MGP_C3HHeJ_G0015266.1 mouse_genomes_project 3 49768370 49775455 + 5031434O11Rik processed_transcript antisense MGP_C3HHeJ_T0017733.1 MGP_C3HHeJ_G0015266.1 mouse_genomes_project 3 49770806 49775443 + 5031434O11Rik processed_transcript antisense MGP_C3HHeJ_T0017734.1 MGP_C3HHeJ_G0015266.1 mouse_genomes_project 3 49771978 49775449 + 5031434O11Rik processed_transcript retained_intron MGP_C3HHeJ_T0001219.1 MGP_C3HHeJ_G0001151.1 mouse_genomes_project 3 83397548 83402024 - TEC TEC MGP_C3HHeJ_T0063730.1 MGP_C3HHeJ_G0027644.1 mouse_genomes_project 3 144726391 144746165 + MGP_C3HHeJ_P0063730 Gbp2 protein_coding protein_coding MGP_C3HHeJ_T0063731.1 MGP_C3HHeJ_G0027644.1 mouse_genomes_project 3 144726424 144738743 + MGP_C3HHeJ_P0063731 Gbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013896.1 MGP_C3HHeJ_G0012000.1 mouse_genomes_project 3 52957838 52959532 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004166.1 MGP_C3HHeJ_G0003663.1 mouse_genomes_project 3 51314720 51317891 - Gm42901 antisense antisense MGP_C3HHeJ_T0001318.1 MGP_C3HHeJ_G0001249.1 mouse_genomes_project 3 132977493 132979748 + TEC TEC MGP_C3HHeJ_T0014081.1 MGP_C3HHeJ_G0012185.1 mouse_genomes_project 3 108977722 108978125 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001338.1 MGP_C3HHeJ_G0001269.1 mouse_genomes_project 3 150877282 150878153 + TEC TEC MGP_C3HHeJ_T0063231.1 MGP_C3HHeJ_G0027551.1 mouse_genomes_project 3 125045347 125101219 + MGP_C3HHeJ_P0063231 Prss12 protein_coding protein_coding MGP_C3HHeJ_T0014149.1 MGP_C3HHeJ_G0012253.1 mouse_genomes_project 3 132756439 132757744 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013850.1 MGP_C3HHeJ_G0011954.1 mouse_genomes_project 3 36326950 36327783 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059822.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377898 17453899 + MGP_C3HHeJ_P0059822 Hltf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059823.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377898 17455108 + MGP_C3HHeJ_P0059823 Hltf protein_coding protein_coding MGP_C3HHeJ_T0059824.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377907 17443404 + Hltf protein_coding retained_intron MGP_C3HHeJ_T0059825.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17377940 17387043 + Hltf protein_coding retained_intron MGP_C3HHeJ_T0059826.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17380798 17455094 + MGP_C3HHeJ_P0059826 Hltf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059827.1 MGP_C3HHeJ_G0026812.1 mouse_genomes_project 3 17443376 17455108 + Hltf protein_coding retained_intron MGP_C3HHeJ_T0014192.1 MGP_C3HHeJ_G0012296.1 mouse_genomes_project 3 144477285 144477423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001179.1 MGP_C3HHeJ_G0001111.1 mouse_genomes_project 3 51790808 51791999 + TEC TEC MGP_C3HHeJ_T0007620.1 MGP_C3HHeJ_G0006226.1 mouse_genomes_project 3 132690374 132691917 + Gm36520 lincRNA lincRNA MGP_C3HHeJ_T0013893.1 MGP_C3HHeJ_G0011997.1 mouse_genomes_project 3 51960165 51960631 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004297.1 MGP_C3HHeJ_G0003749.1 mouse_genomes_project 3 131296000 131301557 - Gm35986 antisense antisense MGP_C3HHeJ_T0004298.1 MGP_C3HHeJ_G0003749.1 mouse_genomes_project 3 131296165 131301836 - Gm35986 antisense antisense MGP_C3HHeJ_T0099264.1 MGP_C3HHeJ_G0037458.1 mouse_genomes_project 3 71747629 71747780 - Gm22451 snRNA snRNA MGP_C3HHeJ_T0014147.1 MGP_C3HHeJ_G0012251.1 mouse_genomes_project 3 132573601 132573899 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100538.1 MGP_C3HHeJ_G0038732.1 mouse_genomes_project 3 54303854 54303986 - Gm22784 snoRNA snoRNA MGP_C3HHeJ_T0007378.1 MGP_C3HHeJ_G0006043.1 mouse_genomes_project 3 12385767 12410874 + A930001A20Rik lincRNA lincRNA MGP_C3HHeJ_T0063933.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154293428 154318342 - MGP_C3HHeJ_P0063933 Ifi44 protein_coding protein_coding MGP_C3HHeJ_T0063934.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154294932 154318264 - Ifi44 protein_coding processed_transcript MGP_C3HHeJ_T0063935.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154314072 154318329 - Ifi44 protein_coding retained_intron MGP_C3HHeJ_T0063936.1 MGP_C3HHeJ_G0027684.1 mouse_genomes_project 3 154314173 154318285 - Ifi44 protein_coding processed_transcript MGP_C3HHeJ_T0062693.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470856 107499731 + MGP_C3HHeJ_P0062693 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062694.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470885 107489634 + Dram2 protein_coding retained_intron MGP_C3HHeJ_T0062695.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470889 107478333 + MGP_C3HHeJ_P0062695 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062696.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470922 107498029 + MGP_C3HHeJ_P0062696 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062697.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470928 107489475 + Dram2 protein_coding retained_intron MGP_C3HHeJ_T0062698.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470930 107498029 + MGP_C3HHeJ_P0062698 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062699.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470935 107478301 + MGP_C3HHeJ_P0062699 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062700.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470935 107494077 + MGP_C3HHeJ_P0062700 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0062701.1 MGP_C3HHeJ_G0027437.1 mouse_genomes_project 3 107470939 107494014 + MGP_C3HHeJ_P0062701 Dram2 protein_coding protein_coding MGP_C3HHeJ_T0061807.1 MGP_C3HHeJ_G0027232.1 mouse_genomes_project 3 92683521 92687737 - MGP_C3HHeJ_P0061807 Kprp protein_coding protein_coding MGP_C3HHeJ_T0101193.1 MGP_C3HHeJ_G0039334.1 mouse_genomes_project 3 94396937 94397634 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101194.1 MGP_C3HHeJ_G0039334.1 mouse_genomes_project 3 94397113 94397876 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0004222.1 MGP_C3HHeJ_G0003704.1 mouse_genomes_project 3 95482796 95490581 - 6330562C20Rik antisense antisense MGP_C3HHeJ_T0004223.1 MGP_C3HHeJ_G0003704.1 mouse_genomes_project 3 95483383 95490630 - 6330562C20Rik antisense antisense MGP_C3HHeJ_T0004224.1 MGP_C3HHeJ_G0003704.1 mouse_genomes_project 3 95486891 95490640 - 6330562C20Rik antisense antisense MGP_C3HHeJ_T0061851.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94506218 94508474 - protein_coding retained_intron MGP_C3HHeJ_T0061852.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94506975 94510425 - MGP_C3HHeJ_P0061852 protein_coding protein_coding MGP_C3HHeJ_T0061853.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94517654 - MGP_C3HHeJ_P0061853 protein_coding protein_coding MGP_C3HHeJ_T0061854.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94517572 - MGP_C3HHeJ_P0061854 protein_coding protein_coding MGP_C3HHeJ_T0061855.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94508923 - MGP_C3HHeJ_P0061855 protein_coding protein_coding MGP_C3HHeJ_T0061856.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94510376 - MGP_C3HHeJ_P0061856 protein_coding protein_coding MGP_C3HHeJ_T0061857.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94507196 94510446 - MGP_C3HHeJ_P0061857 protein_coding protein_coding MGP_C3HHeJ_T0061858.1 MGP_C3HHeJ_G0027256.1 mouse_genomes_project 3 94508921 94510572 - protein_coding retained_intron MGP_C3HHeJ_T0063510.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136074772 136097738 + Cxxc4 protein_coding processed_transcript MGP_C3HHeJ_T0063511.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136074779 136100279 + MGP_C3HHeJ_P0063511 Cxxc4 protein_coding protein_coding MGP_C3HHeJ_T0063512.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136074783 136076674 + Cxxc4 protein_coding retained_intron MGP_C3HHeJ_T0063513.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136075108 136096349 + MGP_C3HHeJ_P0063513 Cxxc4 protein_coding protein_coding MGP_C3HHeJ_T0063514.1 MGP_C3HHeJ_G0027600.1 mouse_genomes_project 3 136078782 136085110 + Cxxc4 protein_coding retained_intron MGP_C3HHeJ_T0061771.1 MGP_C3HHeJ_G0027199.1 mouse_genomes_project 3 91850721 91864521 + MGP_C3HHeJ_P0061771 Pglyrp3 protein_coding protein_coding MGP_C3HHeJ_T0063543.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334388 137361479 + MGP_C3HHeJ_P0063543 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063544.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334555 137361528 + MGP_C3HHeJ_P0063544 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063545.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334768 137337837 + Ube2d3 protein_coding processed_transcript MGP_C3HHeJ_T0063546.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334772 137356235 + MGP_C3HHeJ_P0063546 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063547.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334782 137359281 + MGP_C3HHeJ_P0063547 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063548.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334804 137364669 + MGP_C3HHeJ_P0063548 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063549.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334986 137351489 + MGP_C3HHeJ_P0063549 Ube2d3 protein_coding protein_coding MGP_C3HHeJ_T0063550.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137334993 137361539 + MGP_C3HHeJ_P0063550 Ube2d3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063551.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137335103 137354403 + Ube2d3 protein_coding retained_intron MGP_C3HHeJ_T0063552.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137350865 137356279 + Ube2d3 protein_coding retained_intron MGP_C3HHeJ_T0063553.1 MGP_C3HHeJ_G0027607.1 mouse_genomes_project 3 137354887 137356926 + Ube2d3 protein_coding retained_intron MGP_C3HHeJ_T0014122.1 MGP_C3HHeJ_G0012226.1 mouse_genomes_project 3 123348001 123348407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014113.1 MGP_C3HHeJ_G0012217.1 mouse_genomes_project 3 118527942 118528585 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060694.1 MGP_C3HHeJ_G0026979.1 mouse_genomes_project 3 62527641 62544868 - MGP_C3HHeJ_P0060694 E130311K13Rik protein_coding protein_coding MGP_C3HHeJ_T0060695.1 MGP_C3HHeJ_G0026979.1 mouse_genomes_project 3 62538961 62544787 - E130311K13Rik protein_coding processed_transcript MGP_C3HHeJ_T0060696.1 MGP_C3HHeJ_G0026979.1 mouse_genomes_project 3 62542228 62544787 - E130311K13Rik protein_coding retained_intron MGP_C3HHeJ_T0061781.1 MGP_C3HHeJ_G0027208.1 mouse_genomes_project 3 92259950 92261231 + MGP_C3HHeJ_P0061781 Sprr2i protein_coding protein_coding MGP_C3HHeJ_T0060589.1 MGP_C3HHeJ_G0026954.1 mouse_genomes_project 3 57032502 57059077 - MGP_C3HHeJ_P0060589 Erich6 protein_coding protein_coding MGP_C3HHeJ_T0060590.1 MGP_C3HHeJ_G0026954.1 mouse_genomes_project 3 57032512 57051996 - MGP_C3HHeJ_P0060590 Erich6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063778.1 MGP_C3HHeJ_G0027652.1 mouse_genomes_project 3 147034434 147101694 - MGP_C3HHeJ_P0063778 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063780.1 MGP_C3HHeJ_G0027652.1 mouse_genomes_project 3 147034673 147101788 - MGP_C3HHeJ_P0063780 protein_coding protein_coding MGP_C3HHeJ_T0061060.1 MGP_C3HHeJ_G0027069.1 mouse_genomes_project 3 85412177 85421912 - MGP_C3HHeJ_P0061060 Prss48 protein_coding protein_coding MGP_C3HHeJ_T0063676.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140762428 140931982 + MGP_C3HHeJ_P0063676 Tspan5 protein_coding protein_coding MGP_C3HHeJ_T0063677.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140762538 140928633 + MGP_C3HHeJ_P0063677 Tspan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063678.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140762738 140921088 + MGP_C3HHeJ_P0063678 Tspan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063679.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140763002 140918711 + MGP_C3HHeJ_P0063679 Tspan5 protein_coding protein_coding MGP_C3HHeJ_T0063680.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140797876 140926701 + MGP_C3HHeJ_P0063680 Tspan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063681.1 MGP_C3HHeJ_G0027633.1 mouse_genomes_project 3 140863824 140928640 + MGP_C3HHeJ_P0063681 Tspan5 protein_coding protein_coding MGP_C3HHeJ_T0060396.1 MGP_C3HHeJ_G0026913.1 mouse_genomes_project 3 49689235 49701085 + Rab33b protein_coding processed_transcript MGP_C3HHeJ_T0060397.1 MGP_C3HHeJ_G0026913.1 mouse_genomes_project 3 49689245 49689840 + MGP_C3HHeJ_P0060397 Rab33b protein_coding protein_coding MGP_C3HHeJ_T0060398.1 MGP_C3HHeJ_G0026913.1 mouse_genomes_project 3 49689279 49703150 + MGP_C3HHeJ_P0060398 Rab33b protein_coding protein_coding MGP_C3HHeJ_T0061577.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89515885 89537034 - MGP_C3HHeJ_P0061577 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061578.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89515885 89539913 - MGP_C3HHeJ_P0061578 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061579.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89515893 89529770 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061580.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89516560 89539684 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061581.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89517253 89539913 - MGP_C3HHeJ_P0061581 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061582.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89517601 89520162 - MGP_C3HHeJ_P0061582 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061583.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89520118 89522168 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061584.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89521592 89522877 - MGP_C3HHeJ_P0061584 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061585.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522444 89522960 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061586.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522840 89523756 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061587.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522867 89524807 - MGP_C3HHeJ_P0061587 Atp8b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061588.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89522931 89524937 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061589.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89524949 89526858 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061590.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89530243 89531044 - Atp8b2 protein_coding retained_intron MGP_C3HHeJ_T0061591.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89530674 89535959 - MGP_C3HHeJ_P0061591 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061592.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89534411 89539519 - MGP_C3HHeJ_P0061592 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0061593.1 MGP_C3HHeJ_G0027164.1 mouse_genomes_project 3 89534958 89538220 - MGP_C3HHeJ_P0061593 Atp8b2 protein_coding protein_coding MGP_C3HHeJ_T0013854.1 MGP_C3HHeJ_G0011958.1 mouse_genomes_project 3 37725305 37725585 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007395.1 MGP_C3HHeJ_G0006053.1 mouse_genomes_project 3 19335107 19335879 - Gm43674 lincRNA lincRNA MGP_C3HHeJ_T0001082.1 MGP_C3HHeJ_G0001016.1 mouse_genomes_project 3 10644152 10647847 + TEC TEC MGP_C3HHeJ_T0007458.1 MGP_C3HHeJ_G0006103.1 mouse_genomes_project 3 50766438 50803796 + Gm30173 lincRNA lincRNA MGP_C3HHeJ_T0059764.1 MGP_C3HHeJ_G0026800.1 mouse_genomes_project 3 15333033 15336377 + MGP_C3HHeJ_P0059764 Bhlhe22 protein_coding protein_coding MGP_C3HHeJ_T0014210.1 MGP_C3HHeJ_G0012314.1 mouse_genomes_project 3 154659027 154659583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001202.1 MGP_C3HHeJ_G0001134.1 mouse_genomes_project 3 64795232 64797241 + TEC TEC MGP_C3HHeJ_T0062671.1 MGP_C3HHeJ_G0027431.1 mouse_genomes_project 3 107002044 107023067 + MGP_C3HHeJ_P0062671 Chia1 protein_coding protein_coding MGP_C3HHeJ_T0062672.1 MGP_C3HHeJ_G0027431.1 mouse_genomes_project 3 107002205 107019896 + MGP_C3HHeJ_P0062672 Chia1 protein_coding protein_coding MGP_C3HHeJ_T0062673.1 MGP_C3HHeJ_G0027431.1 mouse_genomes_project 3 107013424 107019512 + Chia1 protein_coding retained_intron MGP_C3HHeJ_T0099310.1 MGP_C3HHeJ_G0037504.1 mouse_genomes_project 3 139036949 139037056 + Gm26107 snRNA snRNA MGP_C3HHeJ_T0013997.1 MGP_C3HHeJ_G0012101.1 mouse_genomes_project 3 86360340 86360636 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098456.1 MGP_C3HHeJ_G0036661.1 mouse_genomes_project 3 106361996 106363945 + Gm43847 sense_intronic sense_intronic MGP_C3HHeJ_T0004320.1 MGP_C3HHeJ_G0003764.1 mouse_genomes_project 3 143523907 143531234 - Gm15688 antisense antisense MGP_C3HHeJ_T0059672.1 MGP_C3HHeJ_G0026767.1 mouse_genomes_project 3 6034971 6168746 - MGP_C3HHeJ_P0059672 Mrps28 protein_coding protein_coding MGP_C3HHeJ_T0001124.1 MGP_C3HHeJ_G0001058.1 mouse_genomes_project 3 35700011 35701280 + TEC TEC MGP_C3HHeJ_T0062702.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107612988 107661188 + MGP_C3HHeJ_P0062702 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062703.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107612999 107657482 + Lrif1 protein_coding processed_transcript MGP_C3HHeJ_T0062704.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647011 107657495 + MGP_C3HHeJ_P0062704 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062705.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647176 107659666 + MGP_C3HHeJ_P0062705 Lrif1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062706.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647176 107661861 + MGP_C3HHeJ_P0062706 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062707.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647191 107657333 + MGP_C3HHeJ_P0062707 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062708.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647208 107659902 + Lrif1 protein_coding retained_intron MGP_C3HHeJ_T0062709.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647209 107651946 + Lrif1 protein_coding retained_intron MGP_C3HHeJ_T0062710.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647209 107658871 + Lrif1 protein_coding processed_transcript MGP_C3HHeJ_T0062711.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647219 107661858 + MGP_C3HHeJ_P0062711 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062712.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107647250 107657347 + MGP_C3HHeJ_P0062712 Lrif1 protein_coding protein_coding MGP_C3HHeJ_T0062713.1 MGP_C3HHeJ_G0027438.1 mouse_genomes_project 3 107658197 107659111 + Lrif1 protein_coding retained_intron MGP_C3HHeJ_T0007655.1 MGP_C3HHeJ_G0006257.1 mouse_genomes_project 3 145503453 145506660 + Gm43612 lincRNA lincRNA MGP_C3HHeJ_T0099290.1 MGP_C3HHeJ_G0037484.1 mouse_genomes_project 3 96748535 96748737 - Gm26232 snRNA snRNA MGP_C3HHeJ_T0001347.1 MGP_C3HHeJ_G0001278.1 mouse_genomes_project 3 154974477 154976256 + TEC TEC MGP_C3HHeJ_T0061665.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89828612 89832629 + MGP_C3HHeJ_P0061665 Jtb protein_coding protein_coding MGP_C3HHeJ_T0061666.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89828627 89832335 + MGP_C3HHeJ_P0061666 Jtb protein_coding protein_coding MGP_C3HHeJ_T0061667.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89828649 89832210 + Jtb protein_coding retained_intron MGP_C3HHeJ_T0061668.1 MGP_C3HHeJ_G0027172.1 mouse_genomes_project 3 89829062 89830828 + Jtb protein_coding retained_intron MGP_C3HHeJ_T0062931.1 MGP_C3HHeJ_G0027493.1 mouse_genomes_project 3 110013286 110070869 - MGP_C3HHeJ_P0062931 Fam102b protein_coding protein_coding MGP_C3HHeJ_T0062794.1 MGP_C3HHeJ_G0027464.1 mouse_genomes_project 3 108990287 108996478 - MGP_C3HHeJ_P0062794 Gstm1 protein_coding protein_coding MGP_C3HHeJ_T0062795.1 MGP_C3HHeJ_G0027464.1 mouse_genomes_project 3 108990293 108991349 - Gstm1 protein_coding processed_transcript MGP_C3HHeJ_T0062796.1 MGP_C3HHeJ_G0027464.1 mouse_genomes_project 3 108990659 108996311 - MGP_C3HHeJ_P0062796 Gstm1 protein_coding protein_coding MGP_C3HHeJ_T0100557.1 MGP_C3HHeJ_G0038751.1 mouse_genomes_project 3 88258291 88258426 + Gm25945 snoRNA snoRNA MGP_C3HHeJ_T0100547.1 MGP_C3HHeJ_G0038741.1 mouse_genomes_project 3 76286044 76286121 - Gm23644 snoRNA snoRNA MGP_C3HHeJ_T0064142.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160807438 160833650 - MGP_C3HHeJ_P0064142 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064143.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160807609 160820388 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064144.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160807884 160828776 - MGP_C3HHeJ_P0064144 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064145.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160808468 160820106 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064146.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160808834 160833679 - MGP_C3HHeJ_P0064146 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064147.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160808859 160809486 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064148.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160809308 160810113 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064149.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160809316 160818970 - MGP_C3HHeJ_P0064149 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064150.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160810952 160820635 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064151.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160813284 160815077 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064152.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160816353 160833607 - MGP_C3HHeJ_P0064152 Srsf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064153.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160816393 160833626 - MGP_C3HHeJ_P0064153 Srsf11 protein_coding protein_coding MGP_C3HHeJ_T0064154.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160818978 160828465 - MGP_C3HHeJ_P0064154 Srsf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064155.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160819895 160828581 - MGP_C3HHeJ_P0064155 Srsf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064156.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160820374 160833617 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064157.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160821700 160833622 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064158.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160823489 160828770 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064159.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160827215 160828764 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0064160.1 MGP_C3HHeJ_G0027715.1 mouse_genomes_project 3 160827827 160833625 - Srsf11 protein_coding retained_intron MGP_C3HHeJ_T0007556.1 MGP_C3HHeJ_G0006177.1 mouse_genomes_project 3 102373419 102381319 + Gm43135 lincRNA lincRNA MGP_C3HHeJ_T0099323.1 MGP_C3HHeJ_G0037517.1 mouse_genomes_project 3 162692927 162693034 - Gm23941 snRNA snRNA MGP_C3HHeJ_T0013845.1 MGP_C3HHeJ_G0011949.1 mouse_genomes_project 3 35407359 35407680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098414.1 MGP_C3HHeJ_G0036619.1 mouse_genomes_project 3 98667034 98670095 + Gm43189 sense_intronic sense_intronic MGP_C3HHeJ_T0060777.1 MGP_C3HHeJ_G0027002.1 mouse_genomes_project 3 66734686 67507188 + MGP_C3HHeJ_P0060777 Gm21949 protein_coding protein_coding MGP_C3HHeJ_T0060290.1 MGP_C3HHeJ_G0026898.1 mouse_genomes_project 3 38743665 38746080 - MGP_C3HHeJ_P0060290 1700034I23Rik protein_coding protein_coding MGP_C3HHeJ_T0062596.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666928 - MGP_C3HHeJ_P0062596 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062597.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666928 - MGP_C3HHeJ_P0062597 Mov10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062598.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666607 - MGP_C3HHeJ_P0062598 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062599.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666670 - MGP_C3HHeJ_P0062599 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062600.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644431 105666928 - MGP_C3HHeJ_P0062600 Mov10 protein_coding protein_coding MGP_C3HHeJ_T0062601.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105644744 105666437 - MGP_C3HHeJ_P0062601 Mov10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062602.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105653487 105665719 - Mov10 protein_coding processed_transcript MGP_C3HHeJ_T0062603.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105653528 105666928 - MGP_C3HHeJ_P0062603 Mov10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062604.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105654345 105666481 - Mov10 protein_coding retained_intron MGP_C3HHeJ_T0062605.1 MGP_C3HHeJ_G0027413.1 mouse_genomes_project 3 105654366 105666666 - Mov10 protein_coding processed_transcript MGP_C3HHeJ_T0013988.1 MGP_C3HHeJ_G0012092.1 mouse_genomes_project 3 81838725 81839224 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004327.1 MGP_C3HHeJ_G0003770.1 mouse_genomes_project 3 154695991 154696936 + Gm43455 antisense antisense MGP_C3HHeJ_T0004328.1 MGP_C3HHeJ_G0003770.1 mouse_genomes_project 3 154696210 154696936 + Gm43455 antisense antisense MGP_C3HHeJ_T0010482.1 MGP_C3HHeJ_G0008615.1 mouse_genomes_project 3 160328573 160328644 + Mir186 miRNA miRNA MGP_C3HHeJ_T0064125.1 MGP_C3HHeJ_G0027712.1 mouse_genomes_project 3 160349505 160436278 + MGP_C3HHeJ_P0064125 Ptger3 protein_coding protein_coding MGP_C3HHeJ_T0064126.1 MGP_C3HHeJ_G0027712.1 mouse_genomes_project 3 160349513 160392102 + Ptger3 protein_coding retained_intron MGP_C3HHeJ_T0064127.1 MGP_C3HHeJ_G0027712.1 mouse_genomes_project 3 160349513 160435146 + MGP_C3HHeJ_P0064127 Ptger3 protein_coding protein_coding MGP_C3HHeJ_T0010419.1 MGP_C3HHeJ_G0008552.1 mouse_genomes_project 3 26989752 26989850 + Mir551b miRNA miRNA MGP_C3HHeJ_T0063845.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148484881 148534326 + MGP_C3HHeJ_P0063845 Mcoln2 protein_coding protein_coding MGP_C3HHeJ_T0063846.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148485027 148510630 + Mcoln2 protein_coding retained_intron MGP_C3HHeJ_T0063847.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148485222 148534325 + MGP_C3HHeJ_P0063847 Mcoln2 protein_coding protein_coding MGP_C3HHeJ_T0063848.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148528550 148531299 + MGP_C3HHeJ_P0063848 Mcoln2 protein_coding protein_coding MGP_C3HHeJ_T0063849.1 MGP_C3HHeJ_G0027669.1 mouse_genomes_project 3 148530895 148533953 + Mcoln2 protein_coding retained_intron MGP_C3HHeJ_T0014175.1 MGP_C3HHeJ_G0012279.1 mouse_genomes_project 3 139625159 139625883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098444.1 MGP_C3HHeJ_G0036649.1 mouse_genomes_project 3 104973879 104974595 - C030032O16Rik sense_intronic sense_intronic MGP_C3HHeJ_T0013855.1 MGP_C3HHeJ_G0011959.1 mouse_genomes_project 3 38475970 38476270 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013819.1 MGP_C3HHeJ_G0011923.1 mouse_genomes_project 3 27343593 27343732 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060415.1 MGP_C3HHeJ_G0026917.1 mouse_genomes_project 3 50498844 50583775 + MGP_C3HHeJ_P0060415 Foxo1 protein_coding protein_coding MGP_C3HHeJ_T0001109.1 MGP_C3HHeJ_G0001043.1 mouse_genomes_project 3 31802350 31807678 + TEC TEC MGP_C3HHeJ_T0061733.1 MGP_C3HHeJ_G0027184.1 mouse_genomes_project 3 90131539 90143364 + MGP_C3HHeJ_P0061733 S100a13 protein_coding protein_coding MGP_C3HHeJ_T0014002.1 MGP_C3HHeJ_G0012106.1 mouse_genomes_project 3 87819829 87819976 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100570.1 MGP_C3HHeJ_G0038764.1 mouse_genomes_project 3 109448792 109448916 + Gm22942 snoRNA snoRNA MGP_C3HHeJ_T0001099.1 MGP_C3HHeJ_G0001033.1 mouse_genomes_project 3 28079942 28082021 - TEC TEC MGP_C3HHeJ_T0061295.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88100740 88116901 + MGP_C3HHeJ_P0061295 Ubqln4 protein_coding protein_coding MGP_C3HHeJ_T0061296.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88100749 88110723 + Ubqln4 protein_coding retained_intron MGP_C3HHeJ_T0061297.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88100781 88103866 + MGP_C3HHeJ_P0061297 Ubqln4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061298.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88103730 88111678 + Ubqln4 protein_coding processed_transcript MGP_C3HHeJ_T0061299.1 MGP_C3HHeJ_G0027117.1 mouse_genomes_project 3 88111070 88112438 + Ubqln4 protein_coding retained_intron MGP_C3HHeJ_T0061177.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87501816 87517920 - MGP_C3HHeJ_P0061177 Bcan protein_coding protein_coding MGP_C3HHeJ_T0061178.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87506795 87508791 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061179.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87506795 87512177 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061180.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87507875 87510687 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061181.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87510766 87511587 - Bcan protein_coding retained_intron MGP_C3HHeJ_T0061182.1 MGP_C3HHeJ_G0027094.1 mouse_genomes_project 3 87511454 87517324 - MGP_C3HHeJ_P0061182 Bcan protein_coding protein_coding MGP_C3HHeJ_T0060078.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511829 31512526 + Ttc14 protein_coding retained_intron MGP_C3HHeJ_T0060079.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511837 31518248 + Ttc14 protein_coding retained_intron MGP_C3HHeJ_T0060080.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511845 31519694 + MGP_C3HHeJ_P0060080 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060081.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511864 31524563 + MGP_C3HHeJ_P0060081 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060082.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511867 31536685 + MGP_C3HHeJ_P0060082 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060083.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511867 31526344 + MGP_C3HHeJ_P0060083 Ttc14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060084.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511905 31526702 + MGP_C3HHeJ_P0060084 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060085.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511917 31524161 + MGP_C3HHeJ_P0060085 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060086.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31511933 31526702 + MGP_C3HHeJ_P0060086 Ttc14 protein_coding protein_coding MGP_C3HHeJ_T0060087.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31517967 31524695 + MGP_C3HHeJ_P0060087 Ttc14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060088.1 MGP_C3HHeJ_G0026861.1 mouse_genomes_project 3 31519299 31519875 + Ttc14 protein_coding retained_intron MGP_C3HHeJ_T0059850.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21146536 22187097 - MGP_C3HHeJ_P0059850 Naaladl2 protein_coding protein_coding MGP_C3HHeJ_T0059851.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21152769 21291410 - Naaladl2 protein_coding processed_transcript MGP_C3HHeJ_T0059852.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21153419 21326336 - Naaladl2 protein_coding processed_transcript MGP_C3HHeJ_T0059853.1 MGP_C3HHeJ_G0026818.1 mouse_genomes_project 3 21935700 22551697 - Naaladl2 protein_coding retained_intron MGP_C3HHeJ_T0062407.1 MGP_C3HHeJ_G0027376.1 mouse_genomes_project 3 102046879 102049337 + Igsf3 protein_coding retained_intron MGP_C3HHeJ_T0062408.1 MGP_C3HHeJ_G0027376.1 mouse_genomes_project 3 102046879 102133740 + MGP_C3HHeJ_P0062408 Igsf3 protein_coding protein_coding MGP_C3HHeJ_T0062409.1 MGP_C3HHeJ_G0027376.1 mouse_genomes_project 3 102048134 102130822 + MGP_C3HHeJ_P0062409 Igsf3 protein_coding protein_coding MGP_C3HHeJ_T0063019.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117796776 117838219 + MGP_C3HHeJ_P0063019 Dbt protein_coding protein_coding MGP_C3HHeJ_T0063020.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117796825 117827383 + MGP_C3HHeJ_P0063020 Dbt protein_coding protein_coding MGP_C3HHeJ_T0063021.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117796834 117827405 + MGP_C3HHeJ_P0063021 Dbt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063022.1 MGP_C3HHeJ_G0027512.1 mouse_genomes_project 3 117805559 117823142 + Dbt protein_coding retained_intron MGP_C3HHeJ_T0063651.1 MGP_C3HHeJ_G0027628.1 mouse_genomes_project 3 140310531 140325266 + MGP_C3HHeJ_P0063651 Adh6a protein_coding protein_coding MGP_C3HHeJ_T0063652.1 MGP_C3HHeJ_G0027628.1 mouse_genomes_project 3 140310531 140325862 + MGP_C3HHeJ_P0063652 Adh6a protein_coding protein_coding MGP_C3HHeJ_T0063176.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123847781 123990988 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0063177.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123982167 123990706 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0063178.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123982188 124094934 + MGP_C3HHeJ_P0063178 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063179.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 123982233 124036476 + Bcar3 protein_coding processed_transcript MGP_C3HHeJ_T0063180.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124048597 124073317 + MGP_C3HHeJ_P0063180 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063181.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124069543 124073318 + MGP_C3HHeJ_P0063181 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063182.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124072932 124077606 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0063183.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124075985 124077794 + MGP_C3HHeJ_P0063183 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063184.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124077078 124087953 + MGP_C3HHeJ_P0063184 Bcar3 protein_coding protein_coding MGP_C3HHeJ_T0063185.1 MGP_C3HHeJ_G0027540.1 mouse_genomes_project 3 124089388 124090148 + Bcar3 protein_coding retained_intron MGP_C3HHeJ_T0013791.1 MGP_C3HHeJ_G0011895.1 mouse_genomes_project 3 15199444 15200360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063025.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117874825 117908091 - MGP_C3HHeJ_P0063025 Trmt13 protein_coding protein_coding MGP_C3HHeJ_T0063026.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117874826 117888559 - MGP_C3HHeJ_P0063026 Trmt13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063027.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117874827 117888583 - MGP_C3HHeJ_P0063027 Trmt13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063028.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117875068 117877209 - Trmt13 protein_coding processed_transcript MGP_C3HHeJ_T0063029.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117877856 117888610 - Trmt13 protein_coding retained_intron MGP_C3HHeJ_T0063030.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117879543 117888408 - MGP_C3HHeJ_P0063030 Trmt13 protein_coding protein_coding MGP_C3HHeJ_T0063031.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117883292 117888391 - MGP_C3HHeJ_P0063031 Trmt13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063032.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117885712 117888524 - Trmt13 protein_coding retained_intron MGP_C3HHeJ_T0063033.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117887681 117888561 - MGP_C3HHeJ_P0063033 Trmt13 protein_coding protein_coding MGP_C3HHeJ_T0063038.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117889117 117907625 - Trmt13 protein_coding processed_transcript MGP_C3HHeJ_T0063040.1 MGP_C3HHeJ_G0027514.1 mouse_genomes_project 3 117907043 117907912 - Trmt13 protein_coding retained_intron MGP_C3HHeJ_T0017730.1 MGP_C3HHeJ_G0015265.1 mouse_genomes_project 3 48729809 48815991 - Gm6209 processed_transcript lincRNA MGP_C3HHeJ_T0017731.1 MGP_C3HHeJ_G0015265.1 mouse_genomes_project 3 48788123 48792760 - Gm6209 processed_transcript retained_intron MGP_C3HHeJ_T0004331.1 MGP_C3HHeJ_G0003773.1 mouse_genomes_project 3 155563717 155564337 + Gm16231 antisense antisense MGP_C3HHeJ_T0060930.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79918082 80041982 - MGP_C3HHeJ_P0060930 Gria2 protein_coding protein_coding MGP_C3HHeJ_T0060931.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79924429 80041982 - MGP_C3HHeJ_P0060931 Gria2 protein_coding protein_coding MGP_C3HHeJ_T0060932.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79924674 80041726 - MGP_C3HHeJ_P0060932 Gria2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060933.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79928969 80041938 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060934.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79942078 80041797 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060935.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79943960 80041871 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060936.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 79945200 80041927 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0060937.1 MGP_C3HHeJ_G0027036.1 mouse_genomes_project 3 80039184 80041840 - Gria2 protein_coding retained_intron MGP_C3HHeJ_T0004240.1 MGP_C3HHeJ_G0003715.1 mouse_genomes_project 3 100701085 100708479 - Spag17os antisense antisense MGP_C3HHeJ_T0004241.1 MGP_C3HHeJ_G0003715.1 mouse_genomes_project 3 100703060 100708479 - Spag17os antisense antisense MGP_C3HHeJ_T0013762.1 MGP_C3HHeJ_G0011866.1 mouse_genomes_project 3 7288591 7289405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001103.1 MGP_C3HHeJ_G0001037.1 mouse_genomes_project 3 30117971 30119128 + TEC TEC MGP_C3HHeJ_T0014144.1 MGP_C3HHeJ_G0012248.1 mouse_genomes_project 3 131199328 131200371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063842.1 MGP_C3HHeJ_G0027668.1 mouse_genomes_project 3 148453817 148461527 + MGP_C3HHeJ_P0063842 Mcoln3 protein_coding protein_coding MGP_C3HHeJ_T0063843.1 MGP_C3HHeJ_G0027668.1 mouse_genomes_project 3 148458056 148478426 + MGP_C3HHeJ_P0063843 Mcoln3 protein_coding protein_coding MGP_C3HHeJ_T0063844.1 MGP_C3HHeJ_G0027668.1 mouse_genomes_project 3 148475699 148477283 + Mcoln3 protein_coding retained_intron MGP_C3HHeJ_T0014074.1 MGP_C3HHeJ_G0012178.1 mouse_genomes_project 3 106926297 106926765 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013982.1 MGP_C3HHeJ_G0012086.1 mouse_genomes_project 3 78081700 78082206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063587.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138617856 138754304 + Ppp3ca protein_coding processed_transcript MGP_C3HHeJ_T0063588.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138617856 138900566 + MGP_C3HHeJ_P0063588 Ppp3ca protein_coding protein_coding MGP_C3HHeJ_T0063589.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138618502 138898615 + MGP_C3HHeJ_P0063589 Ppp3ca protein_coding protein_coding MGP_C3HHeJ_T0063590.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138794437 138842220 + Ppp3ca protein_coding processed_transcript MGP_C3HHeJ_T0063591.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138841153 138843800 + Ppp3ca protein_coding retained_intron MGP_C3HHeJ_T0063592.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138848709 138850732 + Ppp3ca protein_coding retained_intron MGP_C3HHeJ_T0063593.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138863068 138891106 + Ppp3ca protein_coding processed_transcript MGP_C3HHeJ_T0063594.1 MGP_C3HHeJ_G0027612.1 mouse_genomes_project 3 138863884 138866395 + Ppp3ca protein_coding retained_intron MGP_C3HHeJ_T0013921.1 MGP_C3HHeJ_G0012025.1 mouse_genomes_project 3 59400497 59400876 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100566.1 MGP_C3HHeJ_G0038760.1 mouse_genomes_project 3 100901495 100901572 + Gm25802 snoRNA snoRNA MGP_C3HHeJ_T0007464.1 MGP_C3HHeJ_G0006108.1 mouse_genomes_project 3 52055555 52072385 + C820005J03Rik lincRNA lincRNA MGP_C3HHeJ_T0060979.1 MGP_C3HHeJ_G0027047.1 mouse_genomes_project 3 82166434 82178439 - MGP_C3HHeJ_P0060979 Lrat protein_coding protein_coding MGP_C3HHeJ_T0013859.1 MGP_C3HHeJ_G0011963.1 mouse_genomes_project 3 39881298 39881941 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014023.1 MGP_C3HHeJ_G0012127.1 mouse_genomes_project 3 93312469 93313252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063763.1 MGP_C3HHeJ_G0027649.1 mouse_genomes_project 3 146615748 146760544 - MGP_C3HHeJ_P0063763 Hs2st1 protein_coding protein_coding MGP_C3HHeJ_T0063764.1 MGP_C3HHeJ_G0027649.1 mouse_genomes_project 3 146640005 146760244 - MGP_C3HHeJ_P0063764 Hs2st1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063765.1 MGP_C3HHeJ_G0027649.1 mouse_genomes_project 3 146758200 146760521 - Hs2st1 protein_coding retained_intron MGP_C3HHeJ_T0007641.1 MGP_C3HHeJ_G0006246.1 mouse_genomes_project 3 139996092 140011138 + Gm19708 lincRNA lincRNA MGP_C3HHeJ_T0007674.1 MGP_C3HHeJ_G0006273.1 mouse_genomes_project 3 148714897 148726664 - Gm10636 lincRNA lincRNA MGP_C3HHeJ_T0014141.1 MGP_C3HHeJ_G0012245.1 mouse_genomes_project 3 129988082 129988516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060260.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38564883 38577473 + MGP_C3HHeJ_P0060260 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060261.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565791 38604190 + MGP_C3HHeJ_P0060261 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060262.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565839 38619435 + MGP_C3HHeJ_P0060262 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060263.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565893 38581236 + MGP_C3HHeJ_P0060263 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060264.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38565992 38579000 + Hspa4l protein_coding retained_intron MGP_C3HHeJ_T0060265.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38566277 38612212 + MGP_C3HHeJ_P0060265 Hspa4l protein_coding protein_coding MGP_C3HHeJ_T0060266.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38594038 38604432 + Hspa4l protein_coding retained_intron MGP_C3HHeJ_T0060267.1 MGP_C3HHeJ_G0026894.1 mouse_genomes_project 3 38606635 38609445 + Hspa4l protein_coding retained_intron MGP_C3HHeJ_T0064062.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156581372 156606124 - MGP_C3HHeJ_P0064062 Acadm protein_coding protein_coding MGP_C3HHeJ_T0064063.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156584705 156589927 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064064.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156584846 156599301 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064065.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156589908 156596557 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064066.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156596071 156600166 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064067.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156596077 156605959 - MGP_C3HHeJ_P0064067 Acadm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064068.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156596131 156605938 - MGP_C3HHeJ_P0064068 Acadm protein_coding protein_coding MGP_C3HHeJ_T0064069.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156599786 156605934 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064070.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156600148 156603395 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0064071.1 MGP_C3HHeJ_G0027701.1 mouse_genomes_project 3 156603093 156605955 - Acadm protein_coding retained_intron MGP_C3HHeJ_T0007528.1 MGP_C3HHeJ_G0006152.1 mouse_genomes_project 3 88072680 88073951 - Gm37584 lincRNA lincRNA MGP_C3HHeJ_T0062838.1 MGP_C3HHeJ_G0027476.1 mouse_genomes_project 3 109367775 109383924 + MGP_C3HHeJ_P0062838 Mybphl protein_coding protein_coding MGP_C3HHeJ_T0062256.1 MGP_C3HHeJ_G0027336.1 mouse_genomes_project 3 97033333 97097013 + MGP_C3HHeJ_P0062256 Rnf115 protein_coding protein_coding MGP_C3HHeJ_T0062257.1 MGP_C3HHeJ_G0027336.1 mouse_genomes_project 3 97033341 97097499 + MGP_C3HHeJ_P0062257 Rnf115 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062258.1 MGP_C3HHeJ_G0027336.1 mouse_genomes_project 3 97033508 97089512 + Rnf115 protein_coding processed_transcript MGP_C3HHeJ_T0013847.1 MGP_C3HHeJ_G0011951.1 mouse_genomes_project 3 35590008 35590383 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061335.1 MGP_C3HHeJ_G0027120.1 mouse_genomes_project 3 88207242 88208487 - MGP_C3HHeJ_P0061335 Rxfp4 protein_coding protein_coding MGP_C3HHeJ_T0007567.1 MGP_C3HHeJ_G0006186.1 mouse_genomes_project 3 105499144 105501945 - Gm29561 lincRNA lincRNA MGP_C3HHeJ_T0061793.1 MGP_C3HHeJ_G0027219.1 mouse_genomes_project 3 92462661 92465436 - MGP_C3HHeJ_P0061793 2210017I01Rik protein_coding protein_coding MGP_C3HHeJ_T0060066.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060066 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060067.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30786977 - MGP_C3HHeJ_P0060067 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060068.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060068 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060069.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060069 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060070.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30654801 30787969 - MGP_C3HHeJ_P0060070 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060071.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30655027 30787938 - MGP_C3HHeJ_P0060071 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060072.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30655347 30858362 - MGP_C3HHeJ_P0060072 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060073.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30655347 30787944 - MGP_C3HHeJ_P0060073 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060074.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30656023 30690659 - MGP_C3HHeJ_P0060074 Pex5l protein_coding protein_coding MGP_C3HHeJ_T0060075.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30659751 30858527 - Pex5l protein_coding retained_intron MGP_C3HHeJ_T0060076.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30839761 30858356 - Pex5l protein_coding processed_transcript MGP_C3HHeJ_T0060077.1 MGP_C3HHeJ_G0026860.1 mouse_genomes_project 3 30855235 30858463 - Pex5l protein_coding retained_intron MGP_C3HHeJ_T0098443.1 MGP_C3HHeJ_G0036648.1 mouse_genomes_project 3 104968424 104970334 - Gm43258 sense_intronic sense_intronic MGP_C3HHeJ_T0062192.1 MGP_C3HHeJ_G0027313.1 mouse_genomes_project 3 96470091 96470535 + MGP_C3HHeJ_P0062192 Hist2h2ab protein_coding protein_coding MGP_C3HHeJ_T0014183.1 MGP_C3HHeJ_G0012287.1 mouse_genomes_project 3 141160273 141160711 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013883.1 MGP_C3HHeJ_G0011987.1 mouse_genomes_project 3 48462483 48463072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001161.1 MGP_C3HHeJ_G0001094.1 mouse_genomes_project 3 49975992 49980954 - TEC TEC MGP_C3HHeJ_T0001114.1 MGP_C3HHeJ_G0001048.1 mouse_genomes_project 3 33756650 33757441 - TEC TEC MGP_C3HHeJ_T0100517.1 MGP_C3HHeJ_G0038711.1 mouse_genomes_project 3 1703267 1703400 - Gm22944 snoRNA snoRNA MGP_C3HHeJ_T0001266.1 MGP_C3HHeJ_G0001198.1 mouse_genomes_project 3 122660537 122663160 + TEC TEC MGP_C3HHeJ_T0061977.1 MGP_C3HHeJ_G0027276.1 mouse_genomes_project 3 95302964 95305807 - MGP_C3HHeJ_P0061977 Tnfaip8l2 protein_coding protein_coding MGP_C3HHeJ_T0060379.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49578774 49586834 - MGP_C3HHeJ_P0060379 Mgarp protein_coding protein_coding MGP_C3HHeJ_T0060380.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49578774 49587024 - MGP_C3HHeJ_P0060380 Mgarp protein_coding protein_coding MGP_C3HHeJ_T0060381.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49578774 49586812 - MGP_C3HHeJ_P0060381 Mgarp protein_coding protein_coding MGP_C3HHeJ_T0060382.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49581163 49586789 - Mgarp protein_coding retained_intron MGP_C3HHeJ_T0060383.1 MGP_C3HHeJ_G0026910.1 mouse_genomes_project 3 49581604 49586774 - Mgarp protein_coding processed_transcript MGP_C3HHeJ_T0062541.1 MGP_C3HHeJ_G0027402.1 mouse_genomes_project 3 104605406 104635266 + MGP_C3HHeJ_P0062541 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014064.1 MGP_C3HHeJ_G0012168.1 mouse_genomes_project 3 103927986 103928741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060475.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53055616 53062340 - MGP_C3HHeJ_P0060475 Exosc8 protein_coding protein_coding MGP_C3HHeJ_T0060476.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53055619 53056397 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060477.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53055620 53061984 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060478.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53056780 53061749 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060479.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53056792 53061260 - MGP_C3HHeJ_P0060479 Exosc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060480.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53058247 53062314 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060481.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53058942 53061993 - MGP_C3HHeJ_P0060481 Exosc8 protein_coding protein_coding MGP_C3HHeJ_T0060482.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53059091 53061284 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060483.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53059101 53060173 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060484.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53060550 53061982 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0060485.1 MGP_C3HHeJ_G0026930.1 mouse_genomes_project 3 53060889 53061982 - Exosc8 protein_coding retained_intron MGP_C3HHeJ_T0011449.1 MGP_C3HHeJ_G0009582.1 mouse_genomes_project 3 88843574 88843826 + Gm22642 misc_RNA misc_RNA MGP_C3HHeJ_T0001286.1 MGP_C3HHeJ_G0001218.1 mouse_genomes_project 3 128271059 128274596 + TEC TEC MGP_C3HHeJ_T0001271.1 MGP_C3HHeJ_G0001203.1 mouse_genomes_project 3 123284405 123287117 - TEC TEC MGP_C3HHeJ_T0014019.1 MGP_C3HHeJ_G0012123.1 mouse_genomes_project 3 93059139 93059803 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007679.1 MGP_C3HHeJ_G0006278.1 mouse_genomes_project 3 151666823 151670907 - Gm10287 lincRNA lincRNA MGP_C3HHeJ_T0007680.1 MGP_C3HHeJ_G0006278.1 mouse_genomes_project 3 151666829 151670907 - Gm10287 lincRNA lincRNA MGP_C3HHeJ_T0014118.1 MGP_C3HHeJ_G0012222.1 mouse_genomes_project 3 122671920 122672915 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007506.1 MGP_C3HHeJ_G0006141.1 mouse_genomes_project 3 82201852 82293870 - Gm30097 lincRNA lincRNA MGP_C3HHeJ_T0007507.1 MGP_C3HHeJ_G0006141.1 mouse_genomes_project 3 82201954 82278585 - Gm30097 lincRNA lincRNA MGP_C3HHeJ_T0007537.1 MGP_C3HHeJ_G0006159.1 mouse_genomes_project 3 94474194 94477719 - 1700040D17Rik lincRNA lincRNA MGP_C3HHeJ_T0001352.1 MGP_C3HHeJ_G0001283.1 mouse_genomes_project 3 156810798 156813035 + TEC TEC MGP_C3HHeJ_T0099274.1 MGP_C3HHeJ_G0037468.1 mouse_genomes_project 3 88367457 88367619 + Gm23054 snRNA snRNA MGP_C3HHeJ_T0013736.1 MGP_C3HHeJ_G0011840.1 mouse_genomes_project 3 350316 351067 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101197.1 MGP_C3HHeJ_G0039336.1 mouse_genomes_project 3 96903047 96928463 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101198.1 MGP_C3HHeJ_G0039336.1 mouse_genomes_project 3 96903050 96928462 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101199.1 MGP_C3HHeJ_G0039336.1 mouse_genomes_project 3 96904012 96906605 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013983.1 MGP_C3HHeJ_G0012087.1 mouse_genomes_project 3 78792839 78793486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098441.1 MGP_C3HHeJ_G0036646.1 mouse_genomes_project 3 104954580 104958735 - Gm42702 sense_intronic sense_intronic MGP_C3HHeJ_T0098416.1 MGP_C3HHeJ_G0036621.1 mouse_genomes_project 3 99766564 99770031 + Gm42717 sense_intronic sense_intronic MGP_C3HHeJ_T0062313.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98043566 98255291 - MGP_C3HHeJ_P0062313 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062314.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98043572 98048766 - Pde4dip protein_coding processed_transcript MGP_C3HHeJ_T0062315.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98043607 98255291 - MGP_C3HHeJ_P0062315 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062316.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98048723 98051010 - Pde4dip protein_coding processed_transcript MGP_C3HHeJ_T0062317.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98093810 98123551 - MGP_C3HHeJ_P0062317 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062318.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98095773 98123473 - MGP_C3HHeJ_P0062318 Pde4dip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062319.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98102247 98234923 - MGP_C3HHeJ_P0062319 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062320.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98155744 98188058 - MGP_C3HHeJ_P0062320 Pde4dip protein_coding protein_coding MGP_C3HHeJ_T0062321.1 MGP_C3HHeJ_G0027349.1 mouse_genomes_project 3 98184177 98234872 - Pde4dip protein_coding retained_intron MGP_C3HHeJ_T0101954.1 MGP_C3HHeJ_G0039919.1 mouse_genomes_project 3 83122399 83144070 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013842.1 MGP_C3HHeJ_G0011946.1 mouse_genomes_project 3 34951279 34952210 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013951.1 MGP_C3HHeJ_G0012055.1 mouse_genomes_project 3 68598533 68599039 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001333.1 MGP_C3HHeJ_G0001264.1 mouse_genomes_project 3 141001057 141002832 - TEC TEC MGP_C3HHeJ_T0062732.1 MGP_C3HHeJ_G0027449.1 mouse_genomes_project 3 108277309 108285586 - MGP_C3HHeJ_P0062732 Rbm15 protein_coding protein_coding MGP_C3HHeJ_T0062733.1 MGP_C3HHeJ_G0027449.1 mouse_genomes_project 3 108279010 108285014 - Rbm15 protein_coding retained_intron MGP_C3HHeJ_T0059974.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28465386 + Gpr160 protein_coding retained_intron MGP_C3HHeJ_T0059975.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28481851 + MGP_C3HHeJ_P0059975 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059976.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28481851 + MGP_C3HHeJ_P0059976 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059977.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441435 28481853 + MGP_C3HHeJ_P0059977 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059978.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441474 28481851 + MGP_C3HHeJ_P0059978 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059979.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441478 28480453 + MGP_C3HHeJ_P0059979 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059980.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441500 28481851 + MGP_C3HHeJ_P0059980 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0059981.1 MGP_C3HHeJ_G0026842.1 mouse_genomes_project 3 28441628 28480482 + MGP_C3HHeJ_P0059981 Gpr160 protein_coding protein_coding MGP_C3HHeJ_T0014221.1 MGP_C3HHeJ_G0012325.1 mouse_genomes_project 3 161773061 161774058 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007660.1 MGP_C3HHeJ_G0006262.1 mouse_genomes_project 3 145801370 145803148 + Gm42704 lincRNA lincRNA MGP_C3HHeJ_T0061827.1 MGP_C3HHeJ_G0027245.1 mouse_genomes_project 3 93285006 93290750 + MGP_C3HHeJ_P0061827 Rptn protein_coding protein_coding MGP_C3HHeJ_T0063427.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538785 132542258 - MGP_C3HHeJ_P0063427 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063428.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538788 132539350 - Rpl34 protein_coding retained_intron MGP_C3HHeJ_T0063429.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538793 132542319 - MGP_C3HHeJ_P0063429 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063430.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538818 132542263 - Rpl34 protein_coding retained_intron MGP_C3HHeJ_T0063431.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132538830 132542242 - MGP_C3HHeJ_P0063431 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063432.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132540267 132542255 - MGP_C3HHeJ_P0063432 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0063433.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132540503 132542268 - Rpl34 protein_coding retained_intron MGP_C3HHeJ_T0063434.1 MGP_C3HHeJ_G0027583.1 mouse_genomes_project 3 132540763 132542267 - MGP_C3HHeJ_P0063434 Rpl34 protein_coding protein_coding MGP_C3HHeJ_T0099263.1 MGP_C3HHeJ_G0037457.1 mouse_genomes_project 3 67426150 67426339 - Gm22073 snRNA snRNA MGP_C3HHeJ_T0007427.1 MGP_C3HHeJ_G0006082.1 mouse_genomes_project 3 35758231 35854034 + lincRNA lincRNA MGP_C3HHeJ_T0004251.1 MGP_C3HHeJ_G0003721.1 mouse_genomes_project 3 104772977 104777023 - Phtf1os antisense antisense MGP_C3HHeJ_T0099306.1 MGP_C3HHeJ_G0037500.1 mouse_genomes_project 3 133697523 133697617 + Gm26103 snRNA snRNA MGP_C3HHeJ_T0004175.1 MGP_C3HHeJ_G0003669.1 mouse_genomes_project 3 57433217 57436905 - Gm43570 antisense antisense MGP_C3HHeJ_T0014134.1 MGP_C3HHeJ_G0012238.1 mouse_genomes_project 3 125852544 125852791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010428.1 MGP_C3HHeJ_G0008561.1 mouse_genomes_project 3 38433503 38433577 + Gm23810 miRNA miRNA MGP_C3HHeJ_T0061711.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090404 90102244 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061712.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090418 90093585 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061713.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090425 90096648 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061714.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090425 90102660 + MGP_C3HHeJ_P0061714 Ilf2 protein_coding protein_coding MGP_C3HHeJ_T0061715.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90090435 90099745 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0061716.1 MGP_C3HHeJ_G0027180.1 mouse_genomes_project 3 90094957 90100669 + Ilf2 protein_coding retained_intron MGP_C3HHeJ_T0011447.1 MGP_C3HHeJ_G0009580.1 mouse_genomes_project 3 82055966 82056208 - Gm22038 misc_RNA misc_RNA MGP_C3HHeJ_T0013927.1 MGP_C3HHeJ_G0012031.1 mouse_genomes_project 3 62453453 62454407 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098452.1 MGP_C3HHeJ_G0036657.1 mouse_genomes_project 3 105482362 105484327 + Gm43585 sense_intronic sense_intronic MGP_C3HHeJ_T0061778.1 MGP_C3HHeJ_G0027206.1 mouse_genomes_project 3 92214398 92215654 + MGP_C3HHeJ_P0061778 Sprr2f protein_coding protein_coding MGP_C3HHeJ_T0007415.1 MGP_C3HHeJ_G0006072.1 mouse_genomes_project 3 32448686 32467005 - Gm3143 lincRNA lincRNA MGP_C3HHeJ_T0007416.1 MGP_C3HHeJ_G0006072.1 mouse_genomes_project 3 32458665 32467007 - Gm3143 lincRNA lincRNA MGP_C3HHeJ_T0060278.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38641948 38688459 - MGP_C3HHeJ_P0060278 protein_coding protein_coding MGP_C3HHeJ_T0060279.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38643353 38688376 - MGP_C3HHeJ_P0060279 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060280.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38651137 38688268 - MGP_C3HHeJ_P0060280 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060281.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38651657 38655172 - protein_coding retained_intron MGP_C3HHeJ_T0060282.1 MGP_C3HHeJ_G0026896.1 mouse_genomes_project 3 38661302 38688390 - MGP_C3HHeJ_P0060282 protein_coding protein_coding MGP_C3HHeJ_T0060220.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35196786 35249974 + MGP_C3HHeJ_P0060220 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060221.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35197093 35254674 + MGP_C3HHeJ_P0060221 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060222.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35197290 35249398 + MGP_C3HHeJ_P0060222 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060223.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35215861 35249398 + Fgf2 protein_coding processed_transcript MGP_C3HHeJ_T0060224.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35230546 35249398 + Fgf2 protein_coding processed_transcript MGP_C3HHeJ_T0060225.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35230642 35249398 + MGP_C3HHeJ_P0060225 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060226.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35230642 35249398 + MGP_C3HHeJ_P0060226 Fgf2 protein_coding protein_coding MGP_C3HHeJ_T0060227.1 MGP_C3HHeJ_G0026885.1 mouse_genomes_project 3 35249141 35249398 + Fgf2 protein_coding retained_intron MGP_C3HHeJ_T0013892.1 MGP_C3HHeJ_G0011996.1 mouse_genomes_project 3 51620513 51621251 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063074.1 MGP_C3HHeJ_G0027523.1 mouse_genomes_project 3 118658436 118707184 - MGP_C3HHeJ_P0063074 Plppr4 protein_coding protein_coding MGP_C3HHeJ_T0063075.1 MGP_C3HHeJ_G0027523.1 mouse_genomes_project 3 118660402 118707184 - Plppr4 protein_coding retained_intron MGP_C3HHeJ_T0063076.1 MGP_C3HHeJ_G0027523.1 mouse_genomes_project 3 118661221 118706556 - MGP_C3HHeJ_P0063076 Plppr4 protein_coding protein_coding MGP_C3HHeJ_T0017797.1 MGP_C3HHeJ_G0015292.1 mouse_genomes_project 3 157015050 157018432 + AI606473 processed_transcript lincRNA MGP_C3HHeJ_T0017798.1 MGP_C3HHeJ_G0015292.1 mouse_genomes_project 3 157016185 157016980 + AI606473 processed_transcript retained_intron MGP_C3HHeJ_T0014110.1 MGP_C3HHeJ_G0012214.1 mouse_genomes_project 3 118157563 118157953 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097899.1 MGP_C3HHeJ_G0036111.1 mouse_genomes_project 3 88897376 88898646 + pseudogene pseudogene MGP_C3HHeJ_T0100553.1 MGP_C3HHeJ_G0038747.1 mouse_genomes_project 3 85559932 85560003 - Rnu73b snoRNA snoRNA MGP_C3HHeJ_T0001147.1 MGP_C3HHeJ_G0001081.1 mouse_genomes_project 3 49050323 49054101 - TEC TEC MGP_C3HHeJ_T0001211.1 MGP_C3HHeJ_G0001143.1 mouse_genomes_project 3 74819751 74820264 - TEC TEC MGP_C3HHeJ_T0007632.1 MGP_C3HHeJ_G0006237.1 mouse_genomes_project 3 136255661 136275362 - 4930539C22Rik lincRNA lincRNA MGP_C3HHeJ_T0063244.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126112189 126134349 - MGP_C3HHeJ_P0063244 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063245.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126112189 126134349 - MGP_C3HHeJ_P0063245 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063246.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126121842 126134350 - MGP_C3HHeJ_P0063246 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063247.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126126526 126134359 - MGP_C3HHeJ_P0063247 1700003H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063248.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126126527 126131762 - MGP_C3HHeJ_P0063248 1700003H04Rik protein_coding protein_coding MGP_C3HHeJ_T0063249.1 MGP_C3HHeJ_G0027555.1 mouse_genomes_project 3 126126527 126134352 - MGP_C3HHeJ_P0063249 1700003H04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063316.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221372 129297564 + MGP_C3HHeJ_P0063316 Zgrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063317.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221372 129297569 + MGP_C3HHeJ_P0063317 Zgrf1 protein_coding protein_coding MGP_C3HHeJ_T0063318.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221385 129296681 + MGP_C3HHeJ_P0063318 Zgrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063319.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221385 129297571 + MGP_C3HHeJ_P0063319 Zgrf1 protein_coding protein_coding MGP_C3HHeJ_T0063320.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129221516 129234122 + MGP_C3HHeJ_P0063320 Zgrf1 protein_coding protein_coding MGP_C3HHeJ_T0063321.1 MGP_C3HHeJ_G0027562.1 mouse_genomes_project 3 129254606 129296532 + MGP_C3HHeJ_P0063321 Zgrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060708.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 63910960 64178232 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060709.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 63910960 64190565 + MGP_C3HHeJ_P0060709 Kcnab1 protein_coding protein_coding MGP_C3HHeJ_T0060710.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 63999980 64190569 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060711.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 64065202 64189430 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060712.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 64108968 64169510 + Kcnab1 protein_coding processed_transcript MGP_C3HHeJ_T0060713.1 MGP_C3HHeJ_G0026987.1 mouse_genomes_project 3 64166191 64171245 + Kcnab1 protein_coding retained_intron MGP_C3HHeJ_T0013940.1 MGP_C3HHeJ_G0012044.1 mouse_genomes_project 3 66438271 66438847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062201.1 MGP_C3HHeJ_G0027321.1 mouse_genomes_project 3 96699374 96740704 - MGP_C3HHeJ_P0062201 BC107364 protein_coding protein_coding MGP_C3HHeJ_T0062202.1 MGP_C3HHeJ_G0027321.1 mouse_genomes_project 3 96699374 96740704 - MGP_C3HHeJ_P0062202 BC107364 protein_coding protein_coding MGP_C3HHeJ_T0014032.1 MGP_C3HHeJ_G0012136.1 mouse_genomes_project 3 96008287 96008434 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060659.1 MGP_C3HHeJ_G0026972.1 mouse_genomes_project 3 59908984 59915770 + MGP_C3HHeJ_P0060659 Rap2b protein_coding protein_coding MGP_C3HHeJ_T0001100.1 MGP_C3HHeJ_G0001034.1 mouse_genomes_project 3 28172391 28173281 - TEC TEC MGP_C3HHeJ_T0013754.1 MGP_C3HHeJ_G0011858.1 mouse_genomes_project 3 5664737 5665545 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061437.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743727 88748541 - MGP_C3HHeJ_P0061437 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061438.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743729 88749078 - MGP_C3HHeJ_P0061438 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061439.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743734 88744983 - MGP_C3HHeJ_P0061439 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061440.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743735 88744313 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061441.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743735 88744741 - Mtx1 protein_coding processed_transcript MGP_C3HHeJ_T0061442.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743735 88749005 - MGP_C3HHeJ_P0061442 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061443.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743737 88744768 - MGP_C3HHeJ_P0061443 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061444.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743740 88748555 - MGP_C3HHeJ_P0061444 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061445.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743861 88748488 - MGP_C3HHeJ_P0061445 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061446.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88743976 88748560 - MGP_C3HHeJ_P0061446 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061447.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744004 88763295 - MGP_C3HHeJ_P0061447 Mtx1 protein_coding protein_coding MGP_C3HHeJ_T0061448.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744062 88745483 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061449.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744294 88745370 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061450.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744391 88748510 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061451.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744678 88748533 - MGP_C3HHeJ_P0061451 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061452.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88744906 88748525 - Mtx1 protein_coding retained_intron MGP_C3HHeJ_T0061453.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88745322 88748474 - MGP_C3HHeJ_P0061453 Mtx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061460.1 MGP_C3HHeJ_G0027137.1 mouse_genomes_project 3 88760342 88763331 - Mtx1 protein_coding processed_transcript MGP_C3HHeJ_T0007484.1 MGP_C3HHeJ_G0006123.1 mouse_genomes_project 3 67980974 68005323 + Gm1647 lincRNA lincRNA MGP_C3HHeJ_T0001085.1 MGP_C3HHeJ_G0001019.1 mouse_genomes_project 3 16450076 16450788 - TEC TEC MGP_C3HHeJ_T0004161.1 MGP_C3HHeJ_G0003658.1 mouse_genomes_project 3 39461176 39462596 - Gm31266 antisense antisense MGP_C3HHeJ_T0010448.1 MGP_C3HHeJ_G0008581.1 mouse_genomes_project 3 93278301 93278439 + Gm44353 miRNA miRNA MGP_C3HHeJ_T0014151.1 MGP_C3HHeJ_G0012255.1 mouse_genomes_project 3 133130256 133132453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059887.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25475342 25484694 + Pld1 protein_coding processed_transcript MGP_C3HHeJ_T0059888.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25475343 25561703 + MGP_C3HHeJ_P0059888 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0059889.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25552575 25657502 + MGP_C3HHeJ_P0059889 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0059890.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25564274 25659126 + MGP_C3HHeJ_P0059890 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0059891.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25575072 25582663 + Pld1 protein_coding processed_transcript MGP_C3HHeJ_T0059892.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25596789 25611493 + Pld1 protein_coding retained_intron MGP_C3HHeJ_T0059893.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25603988 25607301 + Pld1 protein_coding retained_intron MGP_C3HHeJ_T0059894.1 MGP_C3HHeJ_G0026827.1 mouse_genomes_project 3 25635550 25656559 + MGP_C3HHeJ_P0059894 Pld1 protein_coding protein_coding MGP_C3HHeJ_T0061516.1 MGP_C3HHeJ_G0027149.1 mouse_genomes_project 3 88909636 88916305 + MGP_C3HHeJ_P0061516 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0001276.1 MGP_C3HHeJ_G0001208.1 mouse_genomes_project 3 124760279 124760879 - TEC TEC MGP_C3HHeJ_T0062356.1 MGP_C3HHeJ_G0027362.1 mouse_genomes_project 3 99421935 99440514 - MGP_C3HHeJ_P0062356 Hao2 protein_coding protein_coding MGP_C3HHeJ_T0062822.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109185981 109191129 - MGP_C3HHeJ_P0062822 Cyb561d1 protein_coding protein_coding MGP_C3HHeJ_T0062823.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109186065 109191507 - Cyb561d1 protein_coding processed_transcript MGP_C3HHeJ_T0062824.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109186065 109191129 - MGP_C3HHeJ_P0062824 Cyb561d1 protein_coding protein_coding MGP_C3HHeJ_T0062825.1 MGP_C3HHeJ_G0027471.1 mouse_genomes_project 3 109188567 109190890 - MGP_C3HHeJ_P0062825 Cyb561d1 protein_coding protein_coding MGP_C3HHeJ_T0014076.1 MGP_C3HHeJ_G0012180.1 mouse_genomes_project 3 108294852 108295597 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013930.1 MGP_C3HHeJ_G0012034.1 mouse_genomes_project 3 64757863 64758287 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099278.1 MGP_C3HHeJ_G0037472.1 mouse_genomes_project 3 89544403 89544568 - Gm24046 snRNA snRNA MGP_C3HHeJ_T0059704.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7649132 7668679 - MGP_C3HHeJ_P0059704 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0059705.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7651130 7668679 - MGP_C3HHeJ_P0059705 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0059706.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7652294 7653829 - Impa1 protein_coding retained_intron MGP_C3HHeJ_T0059707.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7652362 7668595 - MGP_C3HHeJ_P0059707 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0059709.1 MGP_C3HHeJ_G0026778.1 mouse_genomes_project 3 7663421 7668372 - MGP_C3HHeJ_P0059709 Impa1 protein_coding protein_coding MGP_C3HHeJ_T0098463.1 MGP_C3HHeJ_G0036668.1 mouse_genomes_project 3 130952774 130954261 + Gm27195 sense_intronic sense_intronic MGP_C3HHeJ_T0061387.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88619862 88629585 - MGP_C3HHeJ_P0061387 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061388.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88619862 88629514 - MGP_C3HHeJ_P0061388 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061389.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88620023 88621954 - MGP_C3HHeJ_P0061389 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061390.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88621330 88622258 - Fdps protein_coding retained_intron MGP_C3HHeJ_T0061391.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88621638 88628941 - MGP_C3HHeJ_P0061391 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061392.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88621873 88629478 - MGP_C3HHeJ_P0061392 Fdps protein_coding protein_coding MGP_C3HHeJ_T0061393.1 MGP_C3HHeJ_G0027130.1 mouse_genomes_project 3 88625198 88629517 - Fdps protein_coding retained_intron MGP_C3HHeJ_T0100527.1 MGP_C3HHeJ_G0038721.1 mouse_genomes_project 3 31105570 31105713 - Gm24780 snoRNA snoRNA MGP_C3HHeJ_T0062877.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109611060 109668827 + MGP_C3HHeJ_P0062877 Wdr47 protein_coding protein_coding MGP_C3HHeJ_T0062878.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109611133 109639551 + MGP_C3HHeJ_P0062878 Wdr47 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062879.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109611170 109635844 + Wdr47 protein_coding retained_intron MGP_C3HHeJ_T0062880.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109639747 109645550 + Wdr47 protein_coding processed_transcript MGP_C3HHeJ_T0062881.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109640128 109648432 + Wdr47 protein_coding retained_intron MGP_C3HHeJ_T0062882.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109644243 109654027 + Wdr47 protein_coding processed_transcript MGP_C3HHeJ_T0062883.1 MGP_C3HHeJ_G0027484.1 mouse_genomes_project 3 109648080 109658744 + Wdr47 protein_coding retained_intron MGP_C3HHeJ_T0060431.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51740648 51759887 + MGP_C3HHeJ_P0060431 Proser1 protein_coding protein_coding MGP_C3HHeJ_T0060432.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51740789 51741729 + Proser1 protein_coding retained_intron MGP_C3HHeJ_T0060433.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51740914 51751447 + Proser1 protein_coding retained_intron MGP_C3HHeJ_T0060434.1 MGP_C3HHeJ_G0026921.1 mouse_genomes_project 3 51756089 51757935 + Proser1 protein_coding retained_intron MGP_C3HHeJ_T0004304.1 MGP_C3HHeJ_G0003755.1 mouse_genomes_project 3 135353262 135390979 + Gm42567 antisense antisense MGP_C3HHeJ_T0062481.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792114 103810900 + MGP_C3HHeJ_P0062481 Nras protein_coding protein_coding MGP_C3HHeJ_T0062482.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792177 103796364 + MGP_C3HHeJ_P0062482 Nras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062483.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792196 103798230 + MGP_C3HHeJ_P0062483 Nras protein_coding protein_coding MGP_C3HHeJ_T0062484.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792423 103794142 + MGP_C3HHeJ_P0062484 Nras protein_coding protein_coding MGP_C3HHeJ_T0062485.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792425 103797260 + MGP_C3HHeJ_P0062485 Nras protein_coding protein_coding MGP_C3HHeJ_T0062486.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792572 103796363 + MGP_C3HHeJ_P0062486 Nras protein_coding protein_coding MGP_C3HHeJ_T0062487.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792732 103800343 + MGP_C3HHeJ_P0062487 Nras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062488.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792732 103810892 + MGP_C3HHeJ_P0062488 Nras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062489.1 MGP_C3HHeJ_G0027390.1 mouse_genomes_project 3 103792817 103796812 + Nras protein_coding retained_intron MGP_C3HHeJ_T0063635.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140141740 140160053 + MGP_C3HHeJ_P0063635 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063636.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140141761 140154128 + Trmt10a protein_coding retained_intron MGP_C3HHeJ_T0063637.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140141809 140160050 + MGP_C3HHeJ_P0063637 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063638.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140142091 140146665 + MGP_C3HHeJ_P0063638 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063639.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140142153 140146767 + MGP_C3HHeJ_P0063639 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0063640.1 MGP_C3HHeJ_G0027624.1 mouse_genomes_project 3 140142202 140148786 + MGP_C3HHeJ_P0063640 Trmt10a protein_coding protein_coding MGP_C3HHeJ_T0101201.1 MGP_C3HHeJ_G0039338.1 mouse_genomes_project 3 125839512 125839942 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0100522.1 MGP_C3HHeJ_G0038716.1 mouse_genomes_project 3 11677222 11677347 - Gm23112 snoRNA snoRNA MGP_C3HHeJ_T0063459.1 MGP_C3HHeJ_G0027591.1 mouse_genomes_project 3 134431841 134447510 + MGP_C3HHeJ_P0063459 Gimd1 protein_coding protein_coding MGP_C3HHeJ_T0063460.1 MGP_C3HHeJ_G0027591.1 mouse_genomes_project 3 134436375 134446791 + MGP_C3HHeJ_P0063460 Gimd1 protein_coding protein_coding MGP_C3HHeJ_T0061233.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87865937 87872242 - MGP_C3HHeJ_P0061233 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0061234.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87866328 87872006 - MGP_C3HHeJ_P0061234 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0061235.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87866329 87872192 - MGP_C3HHeJ_P0061235 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0061236.1 MGP_C3HHeJ_G0027106.1 mouse_genomes_project 3 87870875 87873882 - MGP_C3HHeJ_P0061236 Tmem79 protein_coding protein_coding MGP_C3HHeJ_T0010439.1 MGP_C3HHeJ_G0008572.1 mouse_genomes_project 3 87747262 87747370 - Gm25641 miRNA miRNA MGP_C3HHeJ_T0014084.1 MGP_C3HHeJ_G0012188.1 mouse_genomes_project 3 109458627 109459006 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013745.1 MGP_C3HHeJ_G0011849.1 mouse_genomes_project 3 3337987 3340917 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014045.1 MGP_C3HHeJ_G0012149.1 mouse_genomes_project 3 99656747 99657331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014036.1 MGP_C3HHeJ_G0012140.1 mouse_genomes_project 3 96337362 96337548 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060442.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52157113 52162981 - Ufm1 protein_coding retained_intron MGP_C3HHeJ_T0060443.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52157160 52163566 - MGP_C3HHeJ_P0060443 Ufm1 protein_coding protein_coding MGP_C3HHeJ_T0060444.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52157234 52163054 - MGP_C3HHeJ_P0060444 Ufm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060445.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52158102 52163058 - MGP_C3HHeJ_P0060445 Ufm1 protein_coding protein_coding MGP_C3HHeJ_T0060446.1 MGP_C3HHeJ_G0026925.1 mouse_genomes_project 3 52158907 52163054 - Ufm1 protein_coding retained_intron MGP_C3HHeJ_T0101202.1 MGP_C3HHeJ_G0039339.1 mouse_genomes_project 3 129144604 129145599 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0007489.1 MGP_C3HHeJ_G0006127.1 mouse_genomes_project 3 72398265 72531838 - lincRNA lincRNA MGP_C3HHeJ_T0097898.1 MGP_C3HHeJ_G0036110.1 mouse_genomes_project 3 84336178 84336703 - pseudogene pseudogene MGP_C3HHeJ_T0001230.1 MGP_C3HHeJ_G0001162.1 mouse_genomes_project 3 95805773 95807377 + TEC TEC MGP_C3HHeJ_T0062839.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388480 109392820 + MGP_C3HHeJ_P0062839 Psrc1 protein_coding protein_coding MGP_C3HHeJ_T0062840.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388492 109390050 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062841.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388493 109391244 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062842.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388500 109392872 + MGP_C3HHeJ_P0062842 Psrc1 protein_coding protein_coding MGP_C3HHeJ_T0062843.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388520 109391025 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062844.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388557 109390051 + MGP_C3HHeJ_P0062844 Psrc1 protein_coding protein_coding MGP_C3HHeJ_T0062845.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109388578 109391264 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0062846.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109389035 109390586 + Psrc1 protein_coding retained_intron MGP_C3HHeJ_T0062847.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109389495 109391515 + Psrc1 protein_coding retained_intron MGP_C3HHeJ_T0062848.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109389498 109391346 + Psrc1 protein_coding retained_intron MGP_C3HHeJ_T0062849.1 MGP_C3HHeJ_G0027477.1 mouse_genomes_project 3 109390706 109391354 + Psrc1 protein_coding processed_transcript MGP_C3HHeJ_T0063682.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140949986 141103987 - MGP_C3HHeJ_P0063682 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063683.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140949990 141103963 - MGP_C3HHeJ_P0063683 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063684.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140949994 141103896 - MGP_C3HHeJ_P0063684 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063685.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140964862 141103966 - MGP_C3HHeJ_P0063685 Rap1gds1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063686.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140964865 141103974 - MGP_C3HHeJ_P0063686 Rap1gds1 protein_coding protein_coding MGP_C3HHeJ_T0063687.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 140981282 141009098 - Rap1gds1 protein_coding retained_intron MGP_C3HHeJ_T0063688.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 141039586 141103987 - Rap1gds1 protein_coding retained_intron MGP_C3HHeJ_T0063689.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 141046876 141103624 - Rap1gds1 protein_coding processed_transcript MGP_C3HHeJ_T0063690.1 MGP_C3HHeJ_G0027634.1 mouse_genomes_project 3 141076862 141103966 - Rap1gds1 protein_coding retained_intron MGP_C3HHeJ_T0060951.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81198617 81222513 - MGP_C3HHeJ_P0060951 Tdo2 protein_coding protein_coding MGP_C3HHeJ_T0060952.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81200251 81205601 - Tdo2 protein_coding processed_transcript MGP_C3HHeJ_T0060953.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81200318 81222513 - MGP_C3HHeJ_P0060953 Tdo2 protein_coding protein_coding MGP_C3HHeJ_T0060954.1 MGP_C3HHeJ_G0027040.1 mouse_genomes_project 3 81202564 81205553 - Tdo2 protein_coding retained_intron MGP_C3HHeJ_T0060268.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623350 38640729 + MGP_C3HHeJ_P0060268 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060269.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623359 38632259 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060270.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623373 38624955 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060271.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623373 38640597 + MGP_C3HHeJ_P0060271 Plk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060272.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623381 38629379 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060273.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623385 38640729 + MGP_C3HHeJ_P0060273 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060274.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38623585 38640263 + MGP_C3HHeJ_P0060274 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060275.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38624112 38628327 + MGP_C3HHeJ_P0060275 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0060276.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38624794 38625376 + Plk4 protein_coding retained_intron MGP_C3HHeJ_T0060277.1 MGP_C3HHeJ_G0026895.1 mouse_genomes_project 3 38636583 38640728 + MGP_C3HHeJ_P0060277 Plk4 protein_coding protein_coding MGP_C3HHeJ_T0001367.1 MGP_C3HHeJ_G0001298.1 mouse_genomes_project 3 161094416 161098755 + TEC TEC MGP_C3HHeJ_T0013939.1 MGP_C3HHeJ_G0012043.1 mouse_genomes_project 3 65779837 65780159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014046.1 MGP_C3HHeJ_G0012150.1 mouse_genomes_project 3 99737841 99738370 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010440.1 MGP_C3HHeJ_G0008573.1 mouse_genomes_project 3 87747271 87747360 + Mir9-1 miRNA miRNA MGP_C3HHeJ_T0063722.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144652958 144654882 + MGP_C3HHeJ_P0063722 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063723.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144652984 144666136 + MGP_C3HHeJ_P0063723 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063724.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653075 144657120 + MGP_C3HHeJ_P0063724 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063725.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653077 144666143 + MGP_C3HHeJ_P0063725 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063726.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653107 144658446 + Gbp3 protein_coding processed_transcript MGP_C3HHeJ_T0063727.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144653353 144666141 + MGP_C3HHeJ_P0063727 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0063728.1 MGP_C3HHeJ_G0027642.1 mouse_genomes_project 3 144654178 144657992 + MGP_C3HHeJ_P0063728 Gbp3 protein_coding protein_coding MGP_C3HHeJ_T0100555.1 MGP_C3HHeJ_G0038749.1 mouse_genomes_project 3 86501994 86502126 + Gm24472 snoRNA snoRNA MGP_C3HHeJ_T0099287.1 MGP_C3HHeJ_G0037481.1 mouse_genomes_project 3 96683523 96683688 + Gm24136 snRNA snRNA MGP_C3HHeJ_T0014197.1 MGP_C3HHeJ_G0012301.1 mouse_genomes_project 3 146928846 146929413 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062835.1 MGP_C3HHeJ_G0027475.1 mouse_genomes_project 3 109281092 109363267 + MGP_C3HHeJ_P0062835 Sort1 protein_coding protein_coding MGP_C3HHeJ_T0062836.1 MGP_C3HHeJ_G0027475.1 mouse_genomes_project 3 109281101 109363335 + MGP_C3HHeJ_P0062836 Sort1 protein_coding protein_coding MGP_C3HHeJ_T0062837.1 MGP_C3HHeJ_G0027475.1 mouse_genomes_project 3 109357290 109363262 + Sort1 protein_coding retained_intron MGP_C3HHeJ_T0061845.1 MGP_C3HHeJ_G0027254.1 mouse_genomes_project 3 94463449 94469440 + MGP_C3HHeJ_P0061845 Lingo4 protein_coding protein_coding MGP_C3HHeJ_T0014205.1 MGP_C3HHeJ_G0012309.1 mouse_genomes_project 3 149585746 149586195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013877.1 MGP_C3HHeJ_G0011981.1 mouse_genomes_project 3 47726481 47727043 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061144.1 MGP_C3HHeJ_G0027086.1 mouse_genomes_project 3 87339733 87345758 + MGP_C3HHeJ_P0061144 Sh2d2a protein_coding protein_coding MGP_C3HHeJ_T0061145.1 MGP_C3HHeJ_G0027086.1 mouse_genomes_project 3 87339983 87348696 + MGP_C3HHeJ_P0061145 Sh2d2a protein_coding protein_coding MGP_C3HHeJ_T0061146.1 MGP_C3HHeJ_G0027086.1 mouse_genomes_project 3 87339989 87342923 + Sh2d2a protein_coding retained_intron MGP_C3HHeJ_T0014048.1 MGP_C3HHeJ_G0012152.1 mouse_genomes_project 3 100066609 100067314 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011456.1 MGP_C3HHeJ_G0009589.1 mouse_genomes_project 3 127751763 127752031 - Gm26275 misc_RNA misc_RNA MGP_C3HHeJ_T0062204.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96843507 96847445 + MGP_C3HHeJ_P0062204 Txnip protein_coding protein_coding MGP_C3HHeJ_T0062205.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96843510 96847419 + MGP_C3HHeJ_P0062205 Txnip protein_coding protein_coding MGP_C3HHeJ_T0062206.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845048 96845564 + Txnip protein_coding retained_intron MGP_C3HHeJ_T0062207.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845061 96845755 + Txnip protein_coding processed_transcript MGP_C3HHeJ_T0062208.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845273 96847420 + Txnip protein_coding processed_transcript MGP_C3HHeJ_T0062209.1 MGP_C3HHeJ_G0027323.1 mouse_genomes_project 3 96845604 96846125 + Txnip protein_coding retained_intron MGP_C3HHeJ_T0063927.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153987498 154111079 + MGP_C3HHeJ_P0063927 Adgrl4 protein_coding protein_coding MGP_C3HHeJ_T0063928.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153987540 154065467 + MGP_C3HHeJ_P0063928 Adgrl4 protein_coding protein_coding MGP_C3HHeJ_T0063929.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153987885 154063258 + Adgrl4 protein_coding processed_transcript MGP_C3HHeJ_T0063930.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 153988707 154065438 + Adgrl4 protein_coding retained_intron MGP_C3HHeJ_T0063931.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 154065341 154073409 + Adgrl4 protein_coding processed_transcript MGP_C3HHeJ_T0063932.1 MGP_C3HHeJ_G0027683.1 mouse_genomes_project 3 154083388 154088105 + Adgrl4 protein_coding processed_transcript MGP_C3HHeJ_T0060157.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381246 34394255 + MGP_C3HHeJ_P0060157 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0060158.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381246 34391790 + MGP_C3HHeJ_P0060158 Exosc9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060159.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381254 34385388 + Exosc9 protein_coding retained_intron MGP_C3HHeJ_T0060160.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381267 34385607 + Exosc9 protein_coding retained_intron MGP_C3HHeJ_T0060161.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381278 34385561 + MGP_C3HHeJ_P0060161 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0060162.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34381291 34390035 + Exosc9 protein_coding retained_intron MGP_C3HHeJ_T0060163.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34384173 34391765 + MGP_C3HHeJ_P0060163 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0060164.1 MGP_C3HHeJ_G0026875.1 mouse_genomes_project 3 34390822 34394173 + MGP_C3HHeJ_P0060164 Exosc9 protein_coding protein_coding MGP_C3HHeJ_T0007457.1 MGP_C3HHeJ_G0006102.1 mouse_genomes_project 3 50424753 50426995 + Gm37170 lincRNA lincRNA MGP_C3HHeJ_T0007426.1 MGP_C3HHeJ_G0006081.1 mouse_genomes_project 3 35616620 35622878 + Gm42921 lincRNA lincRNA MGP_C3HHeJ_T0001123.1 MGP_C3HHeJ_G0001057.1 mouse_genomes_project 3 35696655 35697768 + TEC TEC MGP_C3HHeJ_T0014211.1 MGP_C3HHeJ_G0012315.1 mouse_genomes_project 3 154745606 154746276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001209.1 MGP_C3HHeJ_G0001141.1 mouse_genomes_project 3 74127018 74129238 - TEC TEC MGP_C3HHeJ_T0062723.1 MGP_C3HHeJ_G0027445.1 mouse_genomes_project 3 108179170 108183278 + MGP_C3HHeJ_P0062723 A630076J17Rik protein_coding protein_coding MGP_C3HHeJ_T0013774.1 MGP_C3HHeJ_G0011878.1 mouse_genomes_project 3 10799006 10799407 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007500.1 MGP_C3HHeJ_G0006135.1 mouse_genomes_project 3 79504343 79555416 - Gm37971 lincRNA lincRNA MGP_C3HHeJ_T0062169.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96393322 + MGP_C3HHeJ_P0062169 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062170.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96396130 + MGP_C3HHeJ_P0062170 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062171.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96412937 + MGP_C3HHeJ_P0062171 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062172.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356133 96412937 + MGP_C3HHeJ_P0062172 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062173.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356152 96382911 + Otud7b protein_coding processed_transcript MGP_C3HHeJ_T0062174.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96356154 96393357 + Otud7b protein_coding processed_transcript MGP_C3HHeJ_T0062175.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96358682 96412938 + MGP_C3HHeJ_P0062175 Otud7b protein_coding protein_coding MGP_C3HHeJ_T0062176.1 MGP_C3HHeJ_G0027308.1 mouse_genomes_project 3 96402520 96404380 + Otud7b protein_coding processed_transcript MGP_C3HHeJ_T0061073.1 MGP_C3HHeJ_G0027072.1 mouse_genomes_project 3 85960858 85964477 - MGP_C3HHeJ_P0061073 Mab21l2 protein_coding protein_coding MGP_C3HHeJ_T0061074.1 MGP_C3HHeJ_G0027072.1 mouse_genomes_project 3 85962242 85964822 - Mab21l2 protein_coding processed_pseudogene MGP_C3HHeJ_T0061422.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88717718 88719260 + MGP_C3HHeJ_P0061422 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061423.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88717778 88723817 + MGP_C3HHeJ_P0061423 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061424.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88717779 88723815 + MGP_C3HHeJ_P0061424 Fam189b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061425.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718155 88723816 + MGP_C3HHeJ_P0061425 Fam189b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061426.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718208 88723814 + MGP_C3HHeJ_P0061426 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061427.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718216 88723821 + MGP_C3HHeJ_P0061427 Fam189b protein_coding protein_coding MGP_C3HHeJ_T0061428.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88718804 88720350 + Fam189b protein_coding retained_intron MGP_C3HHeJ_T0061429.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88721901 88723003 + Fam189b protein_coding retained_intron MGP_C3HHeJ_T0061430.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88722459 88723002 + Fam189b protein_coding retained_intron MGP_C3HHeJ_T0061431.1 MGP_C3HHeJ_G0027135.1 mouse_genomes_project 3 88722509 88723306 + Fam189b protein_coding processed_transcript MGP_C3HHeJ_T0013934.1 MGP_C3HHeJ_G0012038.1 mouse_genomes_project 3 64927587 64927846 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004293.1 MGP_C3HHeJ_G0003746.1 mouse_genomes_project 3 128806976 128813781 + Gm16958 antisense antisense MGP_C3HHeJ_T0004294.1 MGP_C3HHeJ_G0003746.1 mouse_genomes_project 3 128807010 128812810 + Gm16958 antisense antisense MGP_C3HHeJ_T0013821.1 MGP_C3HHeJ_G0011925.1 mouse_genomes_project 3 28143880 28144353 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062884.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677236 109702051 + MGP_C3HHeJ_P0062884 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062885.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677272 109686200 + Clcc1 protein_coding processed_transcript MGP_C3HHeJ_T0062886.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677280 109691282 + Clcc1 protein_coding processed_transcript MGP_C3HHeJ_T0062887.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677281 109702047 + MGP_C3HHeJ_P0062887 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062888.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677281 109686749 + MGP_C3HHeJ_P0062888 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062889.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109677313 109701223 + MGP_C3HHeJ_P0062889 Clcc1 protein_coding protein_coding MGP_C3HHeJ_T0062890.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109686392 109692032 + Clcc1 protein_coding processed_transcript MGP_C3HHeJ_T0062891.1 MGP_C3HHeJ_G0027485.1 mouse_genomes_project 3 109691055 109692038 + Clcc1 protein_coding retained_intron MGP_C3HHeJ_T0100530.1 MGP_C3HHeJ_G0038724.1 mouse_genomes_project 3 35856412 35856543 - Gm22899 snoRNA snoRNA MGP_C3HHeJ_T0063436.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132950526 133068384 + MGP_C3HHeJ_P0063436 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063437.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132950526 133068384 + MGP_C3HHeJ_P0063437 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063438.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132950526 133068384 + MGP_C3HHeJ_P0063438 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063439.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132952862 132957465 + Lef1 protein_coding retained_intron MGP_C3HHeJ_T0063440.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132952862 133068384 + MGP_C3HHeJ_P0063440 Lef1 protein_coding protein_coding MGP_C3HHeJ_T0063441.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132952871 133031918 + Lef1 protein_coding retained_intron MGP_C3HHeJ_T0063442.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132953879 133028576 + Lef1 protein_coding retained_intron MGP_C3HHeJ_T0063443.1 MGP_C3HHeJ_G0027585.1 mouse_genomes_project 3 132953921 133048716 + Lef1 protein_coding processed_transcript MGP_C3HHeJ_T0007392.1 MGP_C3HHeJ_G0006050.1 mouse_genomes_project 3 17648402 17650161 + Gm43525 lincRNA lincRNA MGP_C3HHeJ_T0060822.1 MGP_C3HHeJ_G0027010.1 mouse_genomes_project 3 67916070 67976931 - MGP_C3HHeJ_P0060822 Kpna4 protein_coding protein_coding MGP_C3HHeJ_T0060823.1 MGP_C3HHeJ_G0027010.1 mouse_genomes_project 3 67921142 67976910 - MGP_C3HHeJ_P0060823 Kpna4 protein_coding protein_coding MGP_C3HHeJ_T0060824.1 MGP_C3HHeJ_G0027010.1 mouse_genomes_project 3 67944703 67976448 - MGP_C3HHeJ_P0060824 Kpna4 protein_coding protein_coding MGP_C3HHeJ_T0017764.1 MGP_C3HHeJ_G0015281.1 mouse_genomes_project 3 110166482 110168845 - Gm43223 processed_transcript lincRNA MGP_C3HHeJ_T0017765.1 MGP_C3HHeJ_G0015281.1 mouse_genomes_project 3 110166491 110168623 - Gm43223 processed_transcript processed_transcript MGP_C3HHeJ_T0062301.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981142 98008400 + MGP_C3HHeJ_P0062301 Fmo5 protein_coding protein_coding MGP_C3HHeJ_T0062302.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981176 98005672 + MGP_C3HHeJ_P0062302 Fmo5 protein_coding protein_coding MGP_C3HHeJ_T0062303.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981186 97982271 + Fmo5 protein_coding retained_intron MGP_C3HHeJ_T0062304.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981195 98005722 + MGP_C3HHeJ_P0062304 Fmo5 protein_coding protein_coding MGP_C3HHeJ_T0062305.1 MGP_C3HHeJ_G0027346.1 mouse_genomes_project 3 97981221 97992138 + Fmo5 protein_coding processed_transcript MGP_C3HHeJ_T0001334.1 MGP_C3HHeJ_G0001265.1 mouse_genomes_project 3 143763012 143765624 + TEC TEC MGP_C3HHeJ_T0001121.1 MGP_C3HHeJ_G0001055.1 mouse_genomes_project 3 35496588 35500063 + TEC TEC MGP_C3HHeJ_T0062621.1 MGP_C3HHeJ_G0027416.1 mouse_genomes_project 3 105800110 105817916 - MGP_C3HHeJ_P0062621 Wnt2b protein_coding protein_coding MGP_C3HHeJ_T0062622.1 MGP_C3HHeJ_G0027416.1 mouse_genomes_project 3 105816407 105817716 - Wnt2b protein_coding retained_intron MGP_C3HHeJ_T0007482.1 MGP_C3HHeJ_G0006121.1 mouse_genomes_project 3 67616089 67617617 - 4930535E02Rik lincRNA lincRNA MGP_C3HHeJ_T0062162.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96236935 96243718 - MGP_C3HHeJ_P0062162 Plekho1 protein_coding protein_coding MGP_C3HHeJ_T0062163.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96236953 96246147 - MGP_C3HHeJ_P0062163 Plekho1 protein_coding protein_coding MGP_C3HHeJ_T0062164.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96237506 96243762 - MGP_C3HHeJ_P0062164 Plekho1 protein_coding protein_coding MGP_C3HHeJ_T0062165.1 MGP_C3HHeJ_G0027306.1 mouse_genomes_project 3 96243384 96243718 - Plekho1 protein_coding retained_intron MGP_C3HHeJ_T0062923.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975646 109976218 + Henmt1 protein_coding processed_transcript MGP_C3HHeJ_T0062925.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975832 109978491 + MGP_C3HHeJ_P0062925 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062926.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975857 109997686 + MGP_C3HHeJ_P0062926 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062927.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109975887 109996331 + MGP_C3HHeJ_P0062927 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062928.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109976257 109997784 + MGP_C3HHeJ_P0062928 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0062929.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109977068 109997225 + MGP_C3HHeJ_P0062929 Henmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062930.1 MGP_C3HHeJ_G0027491.1 mouse_genomes_project 3 109977068 109997698 + MGP_C3HHeJ_P0062930 Henmt1 protein_coding protein_coding MGP_C3HHeJ_T0014160.1 MGP_C3HHeJ_G0012264.1 mouse_genomes_project 3 136852616 136853069 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060462.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017909 53055575 + MGP_C3HHeJ_P0060462 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060463.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017925 53055701 + MGP_C3HHeJ_P0060463 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060464.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017925 53055701 + MGP_C3HHeJ_P0060464 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060465.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017927 53055705 + MGP_C3HHeJ_P0060465 Supt20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060466.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017937 53033278 + MGP_C3HHeJ_P0060466 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060467.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017960 53039152 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0060468.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017960 53021762 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0060469.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017960 53022726 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0060470.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53017964 53033509 + MGP_C3HHeJ_P0060470 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060471.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53018207 53043235 + MGP_C3HHeJ_P0060471 Supt20 protein_coding protein_coding MGP_C3HHeJ_T0060472.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53018215 53055702 + MGP_C3HHeJ_P0060472 Supt20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060473.1 MGP_C3HHeJ_G0026928.1 mouse_genomes_project 3 53038637 53040750 + Supt20 protein_coding retained_intron MGP_C3HHeJ_T0100519.1 MGP_C3HHeJ_G0038713.1 mouse_genomes_project 3 4699731 4699848 - Gm23592 snoRNA snoRNA MGP_C3HHeJ_T0060294.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38841369 38869168 + MGP_C3HHeJ_P0060294 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060295.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38841807 38868632 + MGP_C3HHeJ_P0060295 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060296.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38841833 38853227 + MGP_C3HHeJ_P0060296 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060297.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38852630 38855033 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060298.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38853167 38868785 + MGP_C3HHeJ_P0060298 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060299.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38854978 38903787 + MGP_C3HHeJ_P0060299 Larp1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060300.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38862635 38868379 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060301.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38902497 38933765 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060302.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38915193 38933821 + Larp1b protein_coding retained_intron MGP_C3HHeJ_T0060303.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38917087 38932914 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060304.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38917765 38932350 + MGP_C3HHeJ_P0060304 Larp1b protein_coding protein_coding MGP_C3HHeJ_T0060305.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38926773 38927499 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060306.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38926792 38933785 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0060307.1 MGP_C3HHeJ_G0026899.1 mouse_genomes_project 3 38929991 38931872 + Larp1b protein_coding processed_transcript MGP_C3HHeJ_T0099249.1 MGP_C3HHeJ_G0037443.1 mouse_genomes_project 3 47855208 47855315 + Gm23096 snRNA snRNA MGP_C3HHeJ_T0062120.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064213 96091475 - MGP_C3HHeJ_P0062120 Prpf3 protein_coding protein_coding MGP_C3HHeJ_T0062121.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064678 96069754 - MGP_C3HHeJ_P0062121 Prpf3 protein_coding protein_coding MGP_C3HHeJ_T0062122.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064707 96085179 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0062123.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064711 96066897 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0062124.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96064711 96091343 - MGP_C3HHeJ_P0062124 Prpf3 protein_coding protein_coding MGP_C3HHeJ_T0062125.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96070577 96080394 - Prpf3 protein_coding processed_transcript MGP_C3HHeJ_T0062126.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96079031 96081403 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0062127.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96083047 96089237 - MGP_C3HHeJ_P0062127 Prpf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062128.1 MGP_C3HHeJ_G0027299.1 mouse_genomes_project 3 96085140 96091371 - Prpf3 protein_coding retained_intron MGP_C3HHeJ_T0013932.1 MGP_C3HHeJ_G0012036.1 mouse_genomes_project 3 64813030 64815618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062868.1 MGP_C3HHeJ_G0027481.1 mouse_genomes_project 3 109550190 109554751 + 1700013F07Rik protein_coding processed_transcript MGP_C3HHeJ_T0062869.1 MGP_C3HHeJ_G0027481.1 mouse_genomes_project 3 109554591 109560149 + 1700013F07Rik protein_coding processed_transcript MGP_C3HHeJ_T0062870.1 MGP_C3HHeJ_G0027481.1 mouse_genomes_project 3 109554598 109561791 + MGP_C3HHeJ_P0062870 1700013F07Rik protein_coding protein_coding MGP_C3HHeJ_T0014154.1 MGP_C3HHeJ_G0012258.1 mouse_genomes_project 3 134643760 134650200 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013929.1 MGP_C3HHeJ_G0012033.1 mouse_genomes_project 3 64430161 64430968 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063402.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131772459 131854271 - MGP_C3HHeJ_P0063402 Sec24b protein_coding protein_coding MGP_C3HHeJ_T0063403.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131773144 131774222 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063404.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131773313 131773984 - Sec24b protein_coding processed_transcript MGP_C3HHeJ_T0063405.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131779587 131781331 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063406.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131781245 131834269 - MGP_C3HHeJ_P0063406 Sec24b protein_coding protein_coding MGP_C3HHeJ_T0063407.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131800632 131834239 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063408.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131800658 131834545 - MGP_C3HHeJ_P0063408 Sec24b protein_coding protein_coding MGP_C3HHeJ_T0063409.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131803029 131824915 - Sec24b protein_coding retained_intron MGP_C3HHeJ_T0063410.1 MGP_C3HHeJ_G0027579.1 mouse_genomes_project 3 131834661 131854917 - Sec24b protein_coding processed_transcript MGP_C3HHeJ_T0001206.1 MGP_C3HHeJ_G0001138.1 mouse_genomes_project 3 67969568 67972550 - TEC TEC MGP_C3HHeJ_T0007658.1 MGP_C3HHeJ_G0006260.1 mouse_genomes_project 3 145724941 145738080 + Gm33651 lincRNA lincRNA MGP_C3HHeJ_T0007568.1 MGP_C3HHeJ_G0006187.1 mouse_genomes_project 3 106588815 106590062 - Gm43848 lincRNA lincRNA MGP_C3HHeJ_T0064095.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157346595 157452720 + MGP_C3HHeJ_P0064095 protein_coding protein_coding MGP_C3HHeJ_T0064096.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157394120 157434010 + MGP_C3HHeJ_P0064096 protein_coding protein_coding MGP_C3HHeJ_T0064097.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157394867 157397835 + protein_coding processed_transcript MGP_C3HHeJ_T0064098.1 MGP_C3HHeJ_G0027706.1 mouse_genomes_project 3 157449258 157452717 + MGP_C3HHeJ_P0064098 protein_coding protein_coding MGP_C3HHeJ_T0063811.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147577600 147848964 + MGP_C3HHeJ_P0063811 Col24a1 protein_coding protein_coding MGP_C3HHeJ_T0063812.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147577655 147600161 + MGP_C3HHeJ_P0063812 Col24a1 protein_coding protein_coding MGP_C3HHeJ_T0063813.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147812065 147835590 + Col24a1 protein_coding processed_transcript MGP_C3HHeJ_T0063814.1 MGP_C3HHeJ_G0027660.1 mouse_genomes_project 3 147841928 147848959 + Col24a1 protein_coding retained_intron MGP_C3HHeJ_T0010442.1 MGP_C3HHeJ_G0008575.1 mouse_genomes_project 3 88083060 88083142 - Mir1905 miRNA miRNA MGP_C3HHeJ_T0001140.1 MGP_C3HHeJ_G0001074.1 mouse_genomes_project 3 45341391 45344114 - TEC TEC MGP_C3HHeJ_T0064050.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564513 156569538 - MGP_C3HHeJ_P0064050 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064051.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564515 156570236 - MGP_C3HHeJ_P0064051 Rabggtb protein_coding protein_coding MGP_C3HHeJ_T0064052.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564515 156569372 - MGP_C3HHeJ_P0064052 Rabggtb protein_coding protein_coding MGP_C3HHeJ_T0064053.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564517 156570154 - MGP_C3HHeJ_P0064053 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064054.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564519 156570220 - MGP_C3HHeJ_P0064054 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064055.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564680 156569308 - MGP_C3HHeJ_P0064055 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064056.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564798 156569308 - MGP_C3HHeJ_P0064056 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064057.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564798 156569308 - MGP_C3HHeJ_P0064057 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064058.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156564798 156569308 - MGP_C3HHeJ_P0064058 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064059.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156565301 156569260 - MGP_C3HHeJ_P0064059 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064060.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156566640 156570182 - MGP_C3HHeJ_P0064060 Rabggtb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064061.1 MGP_C3HHeJ_G0027700.1 mouse_genomes_project 3 156569212 156570158 - Rabggtb protein_coding processed_transcript MGP_C3HHeJ_T0062521.1 MGP_C3HHeJ_G0027396.1 mouse_genomes_project 3 104429513 104438938 - MGP_C3HHeJ_P0062521 protein_coding protein_coding MGP_C3HHeJ_T0013743.1 MGP_C3HHeJ_G0011847.1 mouse_genomes_project 3 2027432 2028398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010452.1 MGP_C3HHeJ_G0008585.1 mouse_genomes_project 3 95961208 95961271 - Mir7014 miRNA miRNA MGP_C3HHeJ_T0007405.1 MGP_C3HHeJ_G0006063.1 mouse_genomes_project 3 31413164 31476197 - lincRNA lincRNA MGP_C3HHeJ_T0059700.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7576988 7638070 - MGP_C3HHeJ_P0059700 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0059701.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7578697 7587169 - MGP_C3HHeJ_P0059701 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0059702.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7578697 7587142 - MGP_C3HHeJ_P0059702 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0059703.1 MGP_C3HHeJ_G0026777.1 mouse_genomes_project 3 7578730 7638061 - MGP_C3HHeJ_P0059703 Fabp12 protein_coding protein_coding MGP_C3HHeJ_T0062579.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105218645 105291256 - MGP_C3HHeJ_P0062579 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062580.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105283740 105344752 - MGP_C3HHeJ_P0062580 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062581.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105283741 105344740 - MGP_C3HHeJ_P0062581 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062582.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105286316 105310364 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062583.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105286874 105344768 - MGP_C3HHeJ_P0062583 Lrig2 protein_coding protein_coding MGP_C3HHeJ_T0062584.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105287090 105344830 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062585.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105288951 105292554 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062586.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105311765 105344573 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0062587.1 MGP_C3HHeJ_G0027408.1 mouse_genomes_project 3 105320790 105321828 - Lrig2 protein_coding retained_intron MGP_C3HHeJ_T0100546.1 MGP_C3HHeJ_G0038740.1 mouse_genomes_project 3 74835452 74835587 + Gm25846 snoRNA snoRNA MGP_C3HHeJ_T0007557.1 MGP_C3HHeJ_G0006178.1 mouse_genomes_project 3 102431412 102433246 + Gm43134 lincRNA lincRNA MGP_C3HHeJ_T0062714.1 MGP_C3HHeJ_G0027439.1 mouse_genomes_project 3 107686798 107718784 - MGP_C3HHeJ_P0062714 Cd53 protein_coding protein_coding MGP_C3HHeJ_T0062298.1 MGP_C3HHeJ_G0027345.1 mouse_genomes_project 3 97908196 97959623 - MGP_C3HHeJ_P0062298 Chd1l protein_coding protein_coding MGP_C3HHeJ_T0062299.1 MGP_C3HHeJ_G0027345.1 mouse_genomes_project 3 97910088 97915410 - Chd1l protein_coding retained_intron MGP_C3HHeJ_T0062300.1 MGP_C3HHeJ_G0027345.1 mouse_genomes_project 3 97919332 97959612 - Chd1l protein_coding retained_intron MGP_C3HHeJ_T0010477.1 MGP_C3HHeJ_G0008610.1 mouse_genomes_project 3 142088344 142088466 + Mir7j miRNA miRNA MGP_C3HHeJ_T0060701.1 MGP_C3HHeJ_G0026982.1 mouse_genomes_project 3 62710793 62736861 + MGP_C3HHeJ_P0060701 Vmn2r1 protein_coding protein_coding MGP_C3HHeJ_T0001305.1 MGP_C3HHeJ_G0001237.1 mouse_genomes_project 3 129735464 129737428 + TEC TEC MGP_C3HHeJ_T0001306.1 MGP_C3HHeJ_G0001237.1 mouse_genomes_project 3 129735465 129737428 + TEC TEC MGP_C3HHeJ_T0061831.1 MGP_C3HHeJ_G0027249.1 mouse_genomes_project 3 93458465 93469157 + MGP_C3HHeJ_P0061831 S100a10 protein_coding protein_coding MGP_C3HHeJ_T0061832.1 MGP_C3HHeJ_G0027249.1 mouse_genomes_project 3 93458548 93465308 + S100a10 protein_coding retained_intron MGP_C3HHeJ_T0061833.1 MGP_C3HHeJ_G0027249.1 mouse_genomes_project 3 93464529 93468964 + MGP_C3HHeJ_P0061833 S100a10 protein_coding protein_coding MGP_C3HHeJ_T0014125.1 MGP_C3HHeJ_G0012229.1 mouse_genomes_project 3 123729076 123732181 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014158.1 MGP_C3HHeJ_G0012262.1 mouse_genomes_project 3 136110160 136110626 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101967.1 MGP_C3HHeJ_G0039932.1 mouse_genomes_project 3 94342384 94342570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0060587.1 MGP_C3HHeJ_G0026953.1 mouse_genomes_project 3 56998781 57015746 + MGP_C3HHeJ_P0060587 Selt protein_coding unknown_likely_coding MGP_C3HHeJ_T0060588.1 MGP_C3HHeJ_G0026953.1 mouse_genomes_project 3 56998819 57010787 + Selt protein_coding retained_intron MGP_C3HHeJ_T0014162.1 MGP_C3HHeJ_G0012266.1 mouse_genomes_project 3 136855865 136857871 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013738.1 MGP_C3HHeJ_G0011842.1 mouse_genomes_project 3 897294 897610 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007450.1 MGP_C3HHeJ_G0006096.1 mouse_genomes_project 3 46927703 46940122 - Gm37190 lincRNA lincRNA MGP_C3HHeJ_T0014196.1 MGP_C3HHeJ_G0012300.1 mouse_genomes_project 3 146823893 146824455 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059660.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4760315 4809253 - MGP_C3HHeJ_P0059660 Il7 protein_coding protein_coding MGP_C3HHeJ_T0059661.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4763442 4808419 - MGP_C3HHeJ_P0059661 Il7 protein_coding protein_coding MGP_C3HHeJ_T0059662.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4763497 4809286 - MGP_C3HHeJ_P0059662 Il7 protein_coding protein_coding MGP_C3HHeJ_T0059663.1 MGP_C3HHeJ_G0026764.1 mouse_genomes_project 3 4764249 4809267 - Il7 protein_coding processed_transcript MGP_C3HHeJ_T0007369.1 MGP_C3HHeJ_G0006037.1 mouse_genomes_project 3 7057733 7091150 + Gm16337 lincRNA lincRNA MGP_C3HHeJ_T0060165.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34393382 34400617 - MGP_C3HHeJ_P0060165 Ccna2 protein_coding protein_coding MGP_C3HHeJ_T0060166.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34394162 34395379 - Ccna2 protein_coding processed_transcript MGP_C3HHeJ_T0060167.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34394506 34400018 - MGP_C3HHeJ_P0060167 Ccna2 protein_coding protein_coding MGP_C3HHeJ_T0060168.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34394506 34400394 - MGP_C3HHeJ_P0060168 Ccna2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060169.1 MGP_C3HHeJ_G0026876.1 mouse_genomes_project 3 34398913 34400431 - Ccna2 protein_coding retained_intron MGP_C3HHeJ_T0062195.1 MGP_C3HHeJ_G0027316.1 mouse_genomes_project 3 96498362 96523140 + MGP_C3HHeJ_P0062195 Hist2h3c2 protein_coding protein_coding MGP_C3HHeJ_T0007606.1 MGP_C3HHeJ_G0006214.1 mouse_genomes_project 3 125794509 125875919 + Gm43731 lincRNA lincRNA MGP_C3HHeJ_T0013994.1 MGP_C3HHeJ_G0012098.1 mouse_genomes_project 3 85327550 85328025 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014056.1 MGP_C3HHeJ_G0012160.1 mouse_genomes_project 3 101922591 101923151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013999.1 MGP_C3HHeJ_G0012103.1 mouse_genomes_project 3 86489621 86490150 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060774.1 MGP_C3HHeJ_G0027000.1 mouse_genomes_project 3 66411920 66433508 + MGP_C3HHeJ_P0060774 Mfsd1 protein_coding protein_coding MGP_C3HHeJ_T0060775.1 MGP_C3HHeJ_G0027000.1 mouse_genomes_project 3 66413925 66425479 + Mfsd1 protein_coding processed_transcript MGP_C3HHeJ_T0101949.1 MGP_C3HHeJ_G0039914.1 mouse_genomes_project 3 63717711 63718287 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100554.1 MGP_C3HHeJ_G0038748.1 mouse_genomes_project 3 85690666 85690797 - Gm26343 snoRNA snoRNA MGP_C3HHeJ_T0062404.1 MGP_C3HHeJ_G0027375.1 mouse_genomes_project 3 101937569 101950552 - MGP_C3HHeJ_P0062404 Cd2 protein_coding protein_coding MGP_C3HHeJ_T0062405.1 MGP_C3HHeJ_G0027375.1 mouse_genomes_project 3 101937578 101942052 - Cd2 protein_coding retained_intron MGP_C3HHeJ_T0062406.1 MGP_C3HHeJ_G0027375.1 mouse_genomes_project 3 101945667 101950492 - Cd2 protein_coding retained_intron MGP_C3HHeJ_T0098404.1 MGP_C3HHeJ_G0036610.1 mouse_genomes_project 3 23127313 23132649 - Gm37573 sense_intronic sense_intronic MGP_C3HHeJ_T0013868.1 MGP_C3HHeJ_G0011972.1 mouse_genomes_project 3 43679257 43679618 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007472.1 MGP_C3HHeJ_G0006113.1 mouse_genomes_project 3 56520136 56567886 + 4921539H07Rik lincRNA lincRNA MGP_C3HHeJ_T0007474.1 MGP_C3HHeJ_G0006113.1 mouse_genomes_project 3 56566744 56570429 + 4921539H07Rik lincRNA lincRNA MGP_C3HHeJ_T0017756.1 MGP_C3HHeJ_G0015278.1 mouse_genomes_project 3 106836617 106861676 + Gm42890 processed_transcript retained_intron MGP_C3HHeJ_T0017757.1 MGP_C3HHeJ_G0015278.1 mouse_genomes_project 3 106843230 106853521 + Gm42890 processed_transcript retained_intron MGP_C3HHeJ_T0007541.1 MGP_C3HHeJ_G0006163.1 mouse_genomes_project 3 96523707 96529780 + Gm42743 lincRNA lincRNA MGP_C3HHeJ_T0098403.1 MGP_C3HHeJ_G0036609.1 mouse_genomes_project 3 16998738 16999334 + BC002189 sense_intronic sense_intronic MGP_C3HHeJ_T0011435.1 MGP_C3HHeJ_G0009568.1 mouse_genomes_project 3 11425286 11425567 - Gm22026 misc_RNA misc_RNA MGP_C3HHeJ_T0001315.1 MGP_C3HHeJ_G0001246.1 mouse_genomes_project 3 132710351 132711062 + TEC TEC MGP_C3HHeJ_T0001145.1 MGP_C3HHeJ_G0001079.1 mouse_genomes_project 3 48842165 48846230 - TEC TEC MGP_C3HHeJ_T0061808.1 MGP_C3HHeJ_G0027233.1 mouse_genomes_project 3 92710470 92711808 - MGP_C3HHeJ_P0061808 Lce1l protein_coding protein_coding MGP_C3HHeJ_T0004254.1 MGP_C3HHeJ_G0003724.1 mouse_genomes_project 3 106299247 106309737 - Kcnd3os antisense antisense MGP_C3HHeJ_T0004255.1 MGP_C3HHeJ_G0003724.1 mouse_genomes_project 3 106306143 106310966 - Kcnd3os antisense antisense MGP_C3HHeJ_T0004257.1 MGP_C3HHeJ_G0003726.1 mouse_genomes_project 3 107859923 108034368 - Gm27008 antisense antisense MGP_C3HHeJ_T0004258.1 MGP_C3HHeJ_G0003726.1 mouse_genomes_project 3 107874662 108037283 - Gm27008 antisense antisense MGP_C3HHeJ_T0062992.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117194817 117198704 - Slc30a7 protein_coding processed_transcript MGP_C3HHeJ_T0062993.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117194817 117265409 - MGP_C3HHeJ_P0062993 Slc30a7 protein_coding protein_coding MGP_C3HHeJ_T0062994.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117241178 117249578 - Slc30a7 protein_coding processed_transcript MGP_C3HHeJ_T0062995.1 MGP_C3HHeJ_G0027506.1 mouse_genomes_project 3 117248579 117250844 - Slc30a7 protein_coding retained_intron MGP_C3HHeJ_T0061992.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95352237 95392009 - MGP_C3HHeJ_P0061992 Gabpb2 protein_coding protein_coding MGP_C3HHeJ_T0061993.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95356437 95361794 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061994.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95356573 95391796 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061995.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95367315 95392003 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061996.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95369900 95392003 - Gabpb2 protein_coding retained_intron MGP_C3HHeJ_T0061997.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95373343 95391841 - MGP_C3HHeJ_P0061997 Gabpb2 protein_coding protein_coding MGP_C3HHeJ_T0061998.1 MGP_C3HHeJ_G0027278.1 mouse_genomes_project 3 95389322 95391781 - Gabpb2 protein_coding processed_transcript MGP_C3HHeJ_T0001188.1 MGP_C3HHeJ_G0001120.1 mouse_genomes_project 3 54510229 54513845 - TEC TEC MGP_C3HHeJ_T0004282.1 MGP_C3HHeJ_G0003738.1 mouse_genomes_project 3 123044305 123049697 + A530020G20Rik antisense antisense MGP_C3HHeJ_T0004283.1 MGP_C3HHeJ_G0003738.1 mouse_genomes_project 3 123044315 123045170 + A530020G20Rik antisense antisense MGP_C3HHeJ_T0004284.1 MGP_C3HHeJ_G0003738.1 mouse_genomes_project 3 123044365 123047107 + A530020G20Rik antisense antisense MGP_C3HHeJ_T0061949.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216142 95267886 - MGP_C3HHeJ_P0061949 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061950.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216155 95267941 - MGP_C3HHeJ_P0061950 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061951.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216157 95267867 - MGP_C3HHeJ_P0061951 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061952.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95216181 95267790 - MGP_C3HHeJ_P0061952 Pip5k1a protein_coding protein_coding MGP_C3HHeJ_T0061953.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95228350 95237657 - Pip5k1a protein_coding processed_transcript MGP_C3HHeJ_T0061954.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95237245 95242376 - Pip5k1a protein_coding retained_intron MGP_C3HHeJ_T0061955.1 MGP_C3HHeJ_G0027270.1 mouse_genomes_project 3 95256320 95267834 - Pip5k1a protein_coding processed_transcript MGP_C3HHeJ_T0100573.1 MGP_C3HHeJ_G0038767.1 mouse_genomes_project 3 116638796 116638928 + Gm22337 snoRNA snoRNA MGP_C3HHeJ_T0063539.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137302077 137320163 - MGP_C3HHeJ_P0063539 Cisd2 protein_coding protein_coding MGP_C3HHeJ_T0063540.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137305671 137319645 - MGP_C3HHeJ_P0063540 Cisd2 protein_coding protein_coding MGP_C3HHeJ_T0063541.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137316189 137319642 - Cisd2 protein_coding retained_intron MGP_C3HHeJ_T0063542.1 MGP_C3HHeJ_G0027606.1 mouse_genomes_project 3 137317095 137319317 - Cisd2 protein_coding processed_transcript MGP_C3HHeJ_T0062322.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267763 98289854 + MGP_C3HHeJ_P0062322 Sec22b protein_coding protein_coding MGP_C3HHeJ_T0062323.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267789 98288426 + MGP_C3HHeJ_P0062323 Sec22b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062324.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267798 98274238 + MGP_C3HHeJ_P0062324 Sec22b protein_coding protein_coding MGP_C3HHeJ_T0062325.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98267800 98281785 + MGP_C3HHeJ_P0062325 Sec22b protein_coding protein_coding MGP_C3HHeJ_T0062326.1 MGP_C3HHeJ_G0027350.1 mouse_genomes_project 3 98273527 98274238 + Sec22b protein_coding processed_transcript MGP_C3HHeJ_T0014040.1 MGP_C3HHeJ_G0012144.1 mouse_genomes_project 3 97459511 97460114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004159.1 MGP_C3HHeJ_G0003656.1 mouse_genomes_project 3 36759986 36774048 - C230034O21Rik antisense antisense MGP_C3HHeJ_T0007430.1 MGP_C3HHeJ_G0006085.1 mouse_genomes_project 3 36235099 36239344 + Gm42920 lincRNA lincRNA MGP_C3HHeJ_T0014020.1 MGP_C3HHeJ_G0012124.1 mouse_genomes_project 3 93132329 93133868 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007656.1 MGP_C3HHeJ_G0006258.1 mouse_genomes_project 3 145546066 145548198 + 1700001N15Rik lincRNA lincRNA MGP_C3HHeJ_T0011458.1 MGP_C3HHeJ_G0009591.1 mouse_genomes_project 3 157798534 157798645 + Gm26456 misc_RNA misc_RNA MGP_C3HHeJ_T0100565.1 MGP_C3HHeJ_G0038759.1 mouse_genomes_project 3 99680206 99680323 - Gm24216 snoRNA snoRNA MGP_C3HHeJ_T0063691.1 MGP_C3HHeJ_G0027635.1 mouse_genomes_project 3 141241033 141751169 + MGP_C3HHeJ_P0063691 Stpg2 protein_coding protein_coding MGP_C3HHeJ_T0063692.1 MGP_C3HHeJ_G0027635.1 mouse_genomes_project 3 141241232 141751858 + MGP_C3HHeJ_P0063692 Stpg2 protein_coding protein_coding MGP_C3HHeJ_T0014087.1 MGP_C3HHeJ_G0012191.1 mouse_genomes_project 3 110982485 110982969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007576.1 MGP_C3HHeJ_G0006192.1 mouse_genomes_project 3 108787309 108800566 - Gm36211 lincRNA lincRNA MGP_C3HHeJ_T0014003.1 MGP_C3HHeJ_G0012107.1 mouse_genomes_project 3 87968772 87970077 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063227.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124967015 124985502 - MGP_C3HHeJ_P0063227 Mettl14 protein_coding protein_coding MGP_C3HHeJ_T0063228.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124967021 124985606 - MGP_C3HHeJ_P0063228 Mettl14 protein_coding protein_coding MGP_C3HHeJ_T0063229.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124968226 124974160 - MGP_C3HHeJ_P0063229 Mettl14 protein_coding protein_coding MGP_C3HHeJ_T0063230.1 MGP_C3HHeJ_G0027550.1 mouse_genomes_project 3 124985391 124985773 - Mettl14 protein_coding retained_intron MGP_C3HHeJ_T0061209.1 MGP_C3HHeJ_G0027102.1 mouse_genomes_project 3 87775105 87822223 - MGP_C3HHeJ_P0061209 Gm38392 protein_coding protein_coding MGP_C3HHeJ_T0061210.1 MGP_C3HHeJ_G0027102.1 mouse_genomes_project 3 87776920 87822223 - MGP_C3HHeJ_P0061210 Gm38392 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060863.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74630990 74672208 - MGP_C3HHeJ_P0060863 Pdcd10 protein_coding protein_coding MGP_C3HHeJ_T0060864.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74631522 74656762 - MGP_C3HHeJ_P0060864 Pdcd10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060865.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74632462 74672163 - MGP_C3HHeJ_P0060865 Pdcd10 protein_coding protein_coding MGP_C3HHeJ_T0060866.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74643847 74672111 - MGP_C3HHeJ_P0060866 Pdcd10 protein_coding protein_coding MGP_C3HHeJ_T0060867.1 MGP_C3HHeJ_G0027023.1 mouse_genomes_project 3 74648353 74672189 - Pdcd10 protein_coding retained_intron MGP_C3HHeJ_T0062915.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109937923 109948065 - MGP_C3HHeJ_P0062915 Prpf38b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062916.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109937925 109948096 - MGP_C3HHeJ_P0062916 Prpf38b protein_coding protein_coding MGP_C3HHeJ_T0062917.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109938265 109947837 - MGP_C3HHeJ_P0062917 Prpf38b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062918.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109939379 109941955 - Prpf38b protein_coding retained_intron MGP_C3HHeJ_T0062919.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109939594 109942488 - Prpf38b protein_coding processed_transcript MGP_C3HHeJ_T0062920.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109939739 109944350 - Prpf38b protein_coding processed_transcript MGP_C3HHeJ_T0062921.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109942930 109948079 - Prpf38b protein_coding retained_intron MGP_C3HHeJ_T0062922.1 MGP_C3HHeJ_G0027490.1 mouse_genomes_project 3 109942933 109946998 - Prpf38b protein_coding retained_intron MGP_C3HHeJ_T0059828.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458466 17491695 - MGP_C3HHeJ_P0059828 Gyg protein_coding protein_coding MGP_C3HHeJ_T0059829.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458469 17491474 - MGP_C3HHeJ_P0059829 Gyg protein_coding protein_coding MGP_C3HHeJ_T0059830.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458529 17491447 - MGP_C3HHeJ_P0059830 Gyg protein_coding protein_coding MGP_C3HHeJ_T0059831.1 MGP_C3HHeJ_G0026813.1 mouse_genomes_project 3 17458938 17459926 - Gyg protein_coding retained_intron MGP_C3HHeJ_T0098425.1 MGP_C3HHeJ_G0036630.1 mouse_genomes_project 3 102258794 102259546 - Gm42937 sense_intronic sense_intronic MGP_C3HHeJ_T0007380.1 MGP_C3HHeJ_G0006045.1 mouse_genomes_project 3 14586615 14592345 - Gm30340 lincRNA lincRNA MGP_C3HHeJ_T0014101.1 MGP_C3HHeJ_G0012205.1 mouse_genomes_project 3 114928674 114928932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062735.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427241 108477911 - MGP_C3HHeJ_P0062735 Slc6a17 protein_coding protein_coding MGP_C3HHeJ_T0062736.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427246 108477911 - MGP_C3HHeJ_P0062736 Slc6a17 protein_coding protein_coding MGP_C3HHeJ_T0062737.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427247 108460425 - MGP_C3HHeJ_P0062737 Slc6a17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062738.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108427249 108428404 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062739.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108441982 108477642 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062740.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108449665 108453091 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062741.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108449667 108477911 - Slc6a17 protein_coding retained_intron MGP_C3HHeJ_T0062742.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108455609 108477838 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0062743.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108455655 108477230 - MGP_C3HHeJ_P0062743 Slc6a17 protein_coding protein_coding MGP_C3HHeJ_T0062744.1 MGP_C3HHeJ_G0027451.1 mouse_genomes_project 3 108460565 108477220 - Slc6a17 protein_coding processed_transcript MGP_C3HHeJ_T0060104.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31787288 31812990 - MGP_C3HHeJ_P0060104 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0060105.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31808956 31812999 - MGP_C3HHeJ_P0060105 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0060106.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31809001 31812988 - MGP_C3HHeJ_P0060106 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0060107.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31809031 31811858 - Dnajc19 protein_coding retained_intron MGP_C3HHeJ_T0060108.1 MGP_C3HHeJ_G0026864.1 mouse_genomes_project 3 31809111 31812940 - MGP_C3HHeJ_P0060108 Dnajc19 protein_coding protein_coding MGP_C3HHeJ_T0099254.1 MGP_C3HHeJ_G0037448.1 mouse_genomes_project 3 56698080 56698187 - Gm26166 snRNA snRNA MGP_C3HHeJ_T0060868.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672898 74761754 + MGP_C3HHeJ_P0060868 Serpini1 protein_coding protein_coding MGP_C3HHeJ_T0060869.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672898 74734722 + MGP_C3HHeJ_P0060869 Serpini1 protein_coding protein_coding MGP_C3HHeJ_T0060870.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672912 74729696 + Serpini1 protein_coding processed_transcript MGP_C3HHeJ_T0060871.1 MGP_C3HHeJ_G0027024.1 mouse_genomes_project 3 74672929 74734214 + Serpini1 protein_coding retained_intron MGP_C3HHeJ_T0062222.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934032 96944022 + Pex11b protein_coding processed_transcript MGP_C3HHeJ_T0062223.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934086 96944022 + MGP_C3HHeJ_P0062223 Pex11b protein_coding protein_coding MGP_C3HHeJ_T0062225.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934156 96942689 + MGP_C3HHeJ_P0062225 Pex11b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062226.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934309 96935610 + Pex11b protein_coding retained_intron MGP_C3HHeJ_T0062227.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934328 96943382 + MGP_C3HHeJ_P0062227 Pex11b protein_coding protein_coding MGP_C3HHeJ_T0062228.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96934489 96943382 + MGP_C3HHeJ_P0062228 Pex11b protein_coding protein_coding MGP_C3HHeJ_T0062229.1 MGP_C3HHeJ_G0027329.1 mouse_genomes_project 3 96935709 96942456 + Pex11b protein_coding retained_intron MGP_C3HHeJ_T0011434.1 MGP_C3HHeJ_G0009567.1 mouse_genomes_project 3 11241564 11241859 + Gm25981 misc_RNA misc_RNA MGP_C3HHeJ_T0014004.1 MGP_C3HHeJ_G0012108.1 mouse_genomes_project 3 88124678 88127149 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060857.1 MGP_C3HHeJ_G0027021.1 mouse_genomes_project 3 74360738 74389245 - MGP_C3HHeJ_P0060857 Serpini2 protein_coding protein_coding MGP_C3HHeJ_T0013860.1 MGP_C3HHeJ_G0011964.1 mouse_genomes_project 3 40273954 40274102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061894.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955848 95000879 + MGP_C3HHeJ_P0061894 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061895.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955978 94980202 + Pogz protein_coding processed_transcript MGP_C3HHeJ_T0061896.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 94985125 + Pogz protein_coding retained_intron MGP_C3HHeJ_T0061897.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 95000877 + MGP_C3HHeJ_P0061897 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061898.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 94998885 + MGP_C3HHeJ_P0061898 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061899.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94955994 94999428 + MGP_C3HHeJ_P0061899 Pogz protein_coding protein_coding MGP_C3HHeJ_T0061900.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94982336 94983159 + Pogz protein_coding retained_intron MGP_C3HHeJ_T0061901.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94983127 94990850 + MGP_C3HHeJ_P0061901 Pogz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061902.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94989859 94992299 + Pogz protein_coding processed_transcript MGP_C3HHeJ_T0061903.1 MGP_C3HHeJ_G0027264.1 mouse_genomes_project 3 94996207 94997519 + Pogz protein_coding retained_intron MGP_C3HHeJ_T0007510.1 MGP_C3HHeJ_G0006144.1 mouse_genomes_project 3 82843905 82863505 - 1700028M03Rik lincRNA lincRNA MGP_C3HHeJ_T0063355.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131019194 131087850 - MGP_C3HHeJ_P0063355 Enpep protein_coding protein_coding MGP_C3HHeJ_T0063356.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131020296 131087394 - MGP_C3HHeJ_P0063356 Enpep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063357.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131020298 131087611 - MGP_C3HHeJ_P0063357 Enpep protein_coding unknown_likely_coding MGP_C3HHeJ_T0063358.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131028457 131034794 - Enpep protein_coding retained_intron MGP_C3HHeJ_T0063359.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131028628 131064325 - MGP_C3HHeJ_P0063359 Enpep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063360.1 MGP_C3HHeJ_G0027569.1 mouse_genomes_project 3 131052558 131087850 - Enpep protein_coding retained_intron MGP_C3HHeJ_T0004164.1 MGP_C3HHeJ_G0003661.1 mouse_genomes_project 3 50202877 50211923 + Gm20089 antisense antisense MGP_C3HHeJ_T0013971.1 MGP_C3HHeJ_G0012075.1 mouse_genomes_project 3 76004080 76004419 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014093.1 MGP_C3HHeJ_G0012197.1 mouse_genomes_project 3 112886496 112886890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007586.1 MGP_C3HHeJ_G0006201.1 mouse_genomes_project 3 117470741 117473047 + Gm43202 lincRNA lincRNA MGP_C3HHeJ_T0001299.1 MGP_C3HHeJ_G0001231.1 mouse_genomes_project 3 128911558 128917523 - TEC TEC MGP_C3HHeJ_T0063717.1 MGP_C3HHeJ_G0027640.1 mouse_genomes_project 3 144566910 144611475 + MGP_C3HHeJ_P0063717 Gbp5 protein_coding protein_coding MGP_C3HHeJ_T0063718.1 MGP_C3HHeJ_G0027640.1 mouse_genomes_project 3 144584725 144601790 + Gbp5 protein_coding processed_transcript MGP_C3HHeJ_T0063719.1 MGP_C3HHeJ_G0027640.1 mouse_genomes_project 3 144593480 144598031 + Gbp5 protein_coding retained_intron MGP_C3HHeJ_T0013795.1 MGP_C3HHeJ_G0011899.1 mouse_genomes_project 3 16033456 16033745 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007512.1 MGP_C3HHeJ_G0006146.1 mouse_genomes_project 3 84778446 84809075 - Gm42813 lincRNA lincRNA MGP_C3HHeJ_T0004158.1 MGP_C3HHeJ_G0003655.1 mouse_genomes_project 3 35182801 35198181 - Fgf2os antisense antisense MGP_C3HHeJ_T0004195.1 MGP_C3HHeJ_G0003684.1 mouse_genomes_project 3 83082977 83099038 - Gm26771 antisense antisense MGP_C3HHeJ_T0001162.1 MGP_C3HHeJ_G0001095.1 mouse_genomes_project 3 50049137 50050158 - TEC TEC MGP_C3HHeJ_T0007481.1 MGP_C3HHeJ_G0006120.1 mouse_genomes_project 3 66399839 66402096 - 4930402C01Rik lincRNA lincRNA MGP_C3HHeJ_T0014157.1 MGP_C3HHeJ_G0012261.1 mouse_genomes_project 3 136016493 136016934 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098581.1 MGP_C3HHeJ_G0036776.1 mouse_genomes_project 3 63760329 64035691 + sense_overlapping sense_overlapping MGP_C3HHeJ_T0001255.1 MGP_C3HHeJ_G0001187.1 mouse_genomes_project 3 112863103 112864898 + TEC TEC MGP_C3HHeJ_T0010476.1 MGP_C3HHeJ_G0008609.1 mouse_genomes_project 3 140536015 140536080 + Mir1956 miRNA miRNA MGP_C3HHeJ_T0001208.1 MGP_C3HHeJ_G0001140.1 mouse_genomes_project 3 72207447 72209572 + TEC TEC MGP_C3HHeJ_T0007486.1 MGP_C3HHeJ_G0006125.1 mouse_genomes_project 3 72107009 72240614 + lincRNA lincRNA MGP_C3HHeJ_T0007487.1 MGP_C3HHeJ_G0006125.1 mouse_genomes_project 3 72107044 72654364 + lincRNA lincRNA MGP_C3HHeJ_T0014047.1 MGP_C3HHeJ_G0012151.1 mouse_genomes_project 3 100022018 100022252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004202.1 MGP_C3HHeJ_G0003689.1 mouse_genomes_project 3 88236471 88237839 - Gm43714 antisense antisense MGP_C3HHeJ_T0059792.1 MGP_C3HHeJ_G0026808.1 mouse_genomes_project 3 16955839 17004938 + MGP_C3HHeJ_P0059792 Trim55 protein_coding protein_coding MGP_C3HHeJ_T0059793.1 MGP_C3HHeJ_G0026808.1 mouse_genomes_project 3 16955873 16961403 + Trim55 protein_coding processed_transcript MGP_C3HHeJ_T0001149.1 MGP_C3HHeJ_G0001083.1 mouse_genomes_project 3 49142251 49143544 - TEC TEC MGP_C3HHeJ_T0060826.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68169165 68431301 + MGP_C3HHeJ_P0060826 Ppm1l protein_coding protein_coding MGP_C3HHeJ_T0060827.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68364632 68365383 + Ppm1l protein_coding retained_intron MGP_C3HHeJ_T0060828.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68410872 68423413 + Ppm1l protein_coding processed_transcript MGP_C3HHeJ_T0060829.1 MGP_C3HHeJ_G0027012.1 mouse_genomes_project 3 68419499 68423594 + Ppm1l protein_coding retained_intron MGP_C3HHeJ_T0100531.1 MGP_C3HHeJ_G0038725.1 mouse_genomes_project 3 37702776 37702861 - Gm23831 snoRNA snoRNA MGP_C3HHeJ_T0060955.1 MGP_C3HHeJ_G0027041.1 mouse_genomes_project 3 81228623 81246017 + Asic5 protein_coding processed_transcript MGP_C3HHeJ_T0060956.1 MGP_C3HHeJ_G0027041.1 mouse_genomes_project 3 81243272 81267638 + MGP_C3HHeJ_P0060956 Asic5 protein_coding protein_coding MGP_C3HHeJ_T0013953.1 MGP_C3HHeJ_G0012057.1 mouse_genomes_project 3 68839317 68839506 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099266.1 MGP_C3HHeJ_G0037460.1 mouse_genomes_project 3 79041254 79041357 + Gm26420 snRNA snRNA MGP_C3HHeJ_T0060667.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61004648 61048674 - MGP_C3HHeJ_P0060667 Dhx36 protein_coding protein_coding MGP_C3HHeJ_T0060668.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61007280 61009223 - Dhx36 protein_coding retained_intron MGP_C3HHeJ_T0060669.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61021337 61026519 - Dhx36 protein_coding retained_intron MGP_C3HHeJ_T0060670.1 MGP_C3HHeJ_G0026975.1 mouse_genomes_project 3 61038603 61042804 - Dhx36 protein_coding retained_intron MGP_C3HHeJ_T0010451.1 MGP_C3HHeJ_G0008584.1 mouse_genomes_project 3 95302503 95302630 - Mir8099-1 miRNA miRNA MGP_C3HHeJ_T0059935.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27513076 27585089 - MGP_C3HHeJ_P0059935 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059936.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27513086 27585438 - MGP_C3HHeJ_P0059936 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059937.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27513087 27710312 - MGP_C3HHeJ_P0059937 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059938.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514347 27809664 - MGP_C3HHeJ_P0059938 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059939.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514496 27583005 - MGP_C3HHeJ_P0059939 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059940.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514496 27568727 - MGP_C3HHeJ_P0059940 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059941.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27514562 27568766 - MGP_C3HHeJ_P0059941 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059942.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27524866 28089343 - MGP_C3HHeJ_P0059942 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059943.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27527234 28089635 - MGP_C3HHeJ_P0059943 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059944.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27539164 28130405 - MGP_C3HHeJ_P0059944 Mecom protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059945.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27546155 27584994 - Mecom protein_coding processed_transcript MGP_C3HHeJ_T0059946.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27546155 27585137 - Mecom protein_coding retained_intron MGP_C3HHeJ_T0059947.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27568792 27583371 - MGP_C3HHeJ_P0059947 Mecom protein_coding protein_coding MGP_C3HHeJ_T0059948.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27586889 28089546 - Mecom protein_coding processed_transcript MGP_C3HHeJ_T0059949.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27806938 27809462 - Mecom protein_coding retained_intron MGP_C3HHeJ_T0059950.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27808064 28089316 - Mecom protein_coding processed_transcript MGP_C3HHeJ_T0059951.1 MGP_C3HHeJ_G0026834.1 mouse_genomes_project 3 27809473 27809821 - MGP_C3HHeJ_P0059951 Mecom protein_coding protein_coding MGP_C3HHeJ_T0010460.1 MGP_C3HHeJ_G0008593.1 mouse_genomes_project 3 118662251 118662316 + Gm22408 miRNA miRNA MGP_C3HHeJ_T0001184.1 MGP_C3HHeJ_G0001116.1 mouse_genomes_project 3 53927725 53930078 + TEC TEC MGP_C3HHeJ_T0100552.1 MGP_C3HHeJ_G0038746.1 mouse_genomes_project 3 85558155 85558223 - Snord73a snoRNA snoRNA MGP_C3HHeJ_T0062214.1 MGP_C3HHeJ_G0027326.1 mouse_genomes_project 3 96892904 96896134 + MGP_C3HHeJ_P0062214 Ankrd34a protein_coding protein_coding MGP_C3HHeJ_T0001316.1 MGP_C3HHeJ_G0001247.1 mouse_genomes_project 3 132727816 132729195 + TEC TEC MGP_C3HHeJ_T0001200.1 MGP_C3HHeJ_G0001132.1 mouse_genomes_project 3 64496212 64498705 + TEC TEC MGP_C3HHeJ_T0013747.1 MGP_C3HHeJ_G0011851.1 mouse_genomes_project 3 3809875 3810134 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100572.1 MGP_C3HHeJ_G0038766.1 mouse_genomes_project 3 116060981 116061113 - Gm23750 snoRNA snoRNA MGP_C3HHeJ_T0059695.1 MGP_C3HHeJ_G0026775.1 mouse_genomes_project 3 7525480 7529082 - MGP_C3HHeJ_P0059695 protein_coding protein_coding MGP_C3HHeJ_T0059696.1 MGP_C3HHeJ_G0026775.1 mouse_genomes_project 3 7525482 7529143 - MGP_C3HHeJ_P0059696 protein_coding protein_coding MGP_C3HHeJ_T0059697.1 MGP_C3HHeJ_G0026775.1 mouse_genomes_project 3 7525485 7529082 - MGP_C3HHeJ_P0059697 protein_coding protein_coding MGP_C3HHeJ_T0001132.1 MGP_C3HHeJ_G0001066.1 mouse_genomes_project 3 39673665 39676275 + TEC TEC MGP_C3HHeJ_T0061749.1 MGP_C3HHeJ_G0027188.1 mouse_genomes_project 3 90214972 90216233 + MGP_C3HHeJ_P0061749 S100a2 protein_coding protein_coding MGP_C3HHeJ_T0004130.1 MGP_C3HHeJ_G0003637.1 mouse_genomes_project 3 16537238 16550373 + Gm16093 antisense antisense MGP_C3HHeJ_T0099261.1 MGP_C3HHeJ_G0037455.1 mouse_genomes_project 3 64590223 64590330 - Gm25755 snRNA snRNA MGP_C3HHeJ_T0001194.1 MGP_C3HHeJ_G0001126.1 mouse_genomes_project 3 57721393 57722928 + TEC TEC MGP_C3HHeJ_T0013818.1 MGP_C3HHeJ_G0011922.1 mouse_genomes_project 3 25765359 25765603 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001094.1 MGP_C3HHeJ_G0001028.1 mouse_genomes_project 3 27729991 27731626 - TEC TEC MGP_C3HHeJ_T0062745.1 MGP_C3HHeJ_G0027452.1 mouse_genomes_project 3 108514864 108516251 - MGP_C3HHeJ_P0062745 Ubl4b protein_coding protein_coding MGP_C3HHeJ_T0004271.1 MGP_C3HHeJ_G0003728.1 mouse_genomes_project 3 109070696 109073124 + Gm12500 antisense antisense MGP_C3HHeJ_T0004272.1 MGP_C3HHeJ_G0003728.1 mouse_genomes_project 3 109071088 109073122 + Gm12500 antisense antisense MGP_C3HHeJ_T0061604.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582209 89635348 - MGP_C3HHeJ_P0061604 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061605.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582209 89635358 - MGP_C3HHeJ_P0061605 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061606.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582357 89635368 - MGP_C3HHeJ_P0061606 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061607.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582362 89635355 - MGP_C3HHeJ_P0061607 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061608.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89582882 89585359 - MGP_C3HHeJ_P0061608 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061609.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89584468 89585856 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061610.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588063 89635345 - MGP_C3HHeJ_P0061610 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061611.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588288 89604195 - MGP_C3HHeJ_P0061611 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061612.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588289 89635408 - MGP_C3HHeJ_P0061612 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061613.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89588289 89635365 - MGP_C3HHeJ_P0061613 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061614.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89597105 89599199 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061615.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89597278 89603492 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061616.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89597923 89635224 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061617.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89599045 89600533 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061618.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89599457 89601399 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061619.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89603148 89610331 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061620.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89604934 89606323 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061621.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89619353 89621749 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061622.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89621872 89634975 - MGP_C3HHeJ_P0061622 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061623.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89624688 89635395 - Ubap2l protein_coding retained_intron MGP_C3HHeJ_T0061624.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89626628 89635521 - MGP_C3HHeJ_P0061624 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061625.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89626698 89635331 - MGP_C3HHeJ_P0061625 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0061626.1 MGP_C3HHeJ_G0027166.1 mouse_genomes_project 3 89627762 89631192 - MGP_C3HHeJ_P0061626 Ubap2l protein_coding protein_coding MGP_C3HHeJ_T0060283.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38688529 38709899 + MGP_C3HHeJ_P0060283 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060284.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38688543 38826734 + MGP_C3HHeJ_P0060284 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060285.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38688572 38718942 + MGP_C3HHeJ_P0060285 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060286.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737481 38828563 + MGP_C3HHeJ_P0060286 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060287.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737613 38828561 + MGP_C3HHeJ_P0060287 Abhd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060288.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737658 38827564 + MGP_C3HHeJ_P0060288 Abhd18 protein_coding protein_coding MGP_C3HHeJ_T0060289.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38737660 38827581 + MGP_C3HHeJ_P0060289 Abhd18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060291.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38786412 38825820 + MGP_C3HHeJ_P0060291 Abhd18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060292.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38797284 38807164 + Abhd18 protein_coding retained_intron MGP_C3HHeJ_T0060293.1 MGP_C3HHeJ_G0026897.1 mouse_genomes_project 3 38820967 38827122 + Abhd18 protein_coding processed_transcript MGP_C3HHeJ_T0061192.1 MGP_C3HHeJ_G0027097.1 mouse_genomes_project 3 87577143 87579119 - MGP_C3HHeJ_P0061192 Apoa1bp protein_coding protein_coding MGP_C3HHeJ_T0013990.1 MGP_C3HHeJ_G0012094.1 mouse_genomes_project 3 82985102 82985625 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004177.1 MGP_C3HHeJ_G0003671.1 mouse_genomes_project 3 59547318 59549466 - Gm37035 antisense antisense MGP_C3HHeJ_T0014063.1 MGP_C3HHeJ_G0012167.1 mouse_genomes_project 3 103605587 103605876 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062635.1 MGP_C3HHeJ_G0027421.1 mouse_genomes_project 3 106566524 106583757 + MGP_C3HHeJ_P0062635 Fam212b protein_coding protein_coding MGP_C3HHeJ_T0062636.1 MGP_C3HHeJ_G0027421.1 mouse_genomes_project 3 106567395 106581063 + MGP_C3HHeJ_P0062636 Fam212b protein_coding protein_coding MGP_C3HHeJ_T0062565.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776551 104817332 + MGP_C3HHeJ_P0062565 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062566.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776699 104817332 + MGP_C3HHeJ_P0062566 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062567.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776807 104835318 + MGP_C3HHeJ_P0062567 Phtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062568.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776809 104817334 + MGP_C3HHeJ_P0062568 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062569.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776813 104817332 + Phtf1 protein_coding retained_intron MGP_C3HHeJ_T0062570.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776815 104800148 + MGP_C3HHeJ_P0062570 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062571.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104776887 104817334 + MGP_C3HHeJ_P0062571 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062572.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104777029 104796584 + MGP_C3HHeJ_P0062572 Phtf1 protein_coding protein_coding MGP_C3HHeJ_T0062573.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104777366 104807365 + MGP_C3HHeJ_P0062573 Phtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062574.1 MGP_C3HHeJ_G0027406.1 mouse_genomes_project 3 104806263 104807409 + Phtf1 protein_coding retained_intron MGP_C3HHeJ_T0014025.1 MGP_C3HHeJ_G0012129.1 mouse_genomes_project 3 93396683 93397171 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014121.1 MGP_C3HHeJ_G0012225.1 mouse_genomes_project 3 122890128 122890549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004288.1 MGP_C3HHeJ_G0003742.1 mouse_genomes_project 3 124449829 124513155 - 4933405D12Rik antisense antisense MGP_C3HHeJ_T0004289.1 MGP_C3HHeJ_G0003742.1 mouse_genomes_project 3 124467664 124513155 - 4933405D12Rik antisense antisense MGP_C3HHeJ_T0013761.1 MGP_C3HHeJ_G0011865.1 mouse_genomes_project 3 7219063 7222012 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059639.1 MGP_C3HHeJ_G0026757.1 mouse_genomes_project 3 595316 760065 + MGP_C3HHeJ_P0059639 Hnf4g protein_coding protein_coding MGP_C3HHeJ_T0059640.1 MGP_C3HHeJ_G0026757.1 mouse_genomes_project 3 735894 760273 + MGP_C3HHeJ_P0059640 Hnf4g protein_coding protein_coding MGP_C3HHeJ_T0004127.1 MGP_C3HHeJ_G0003635.1 mouse_genomes_project 3 2320535 2365335 - 2700069I18Rik antisense antisense MGP_C3HHeJ_T0004128.1 MGP_C3HHeJ_G0003635.1 mouse_genomes_project 3 2321929 2365353 - 2700069I18Rik antisense antisense MGP_C3HHeJ_T0062078.1 MGP_C3HHeJ_G0027294.1 mouse_genomes_project 3 95880493 95884882 + MGP_C3HHeJ_P0062078 Mcl1 protein_coding protein_coding MGP_C3HHeJ_T0062079.1 MGP_C3HHeJ_G0027294.1 mouse_genomes_project 3 95880562 95882529 + MGP_C3HHeJ_P0062079 Mcl1 protein_coding protein_coding MGP_C3HHeJ_T0098407.1 MGP_C3HHeJ_G0036613.1 mouse_genomes_project 3 84951547 84971083 - Gm15535 sense_intronic sense_intronic MGP_C3HHeJ_T0098408.1 MGP_C3HHeJ_G0036613.1 mouse_genomes_project 3 84955286 84970989 - Gm15535 sense_intronic sense_intronic MGP_C3HHeJ_T0062831.1 MGP_C3HHeJ_G0027473.1 mouse_genomes_project 3 109201761 109216933 - MGP_C3HHeJ_P0062831 Sypl2 protein_coding protein_coding MGP_C3HHeJ_T0062832.1 MGP_C3HHeJ_G0027473.1 mouse_genomes_project 3 109207590 109216928 - Sypl2 protein_coding retained_intron MGP_C3HHeJ_T0004131.1 MGP_C3HHeJ_G0003638.1 mouse_genomes_project 3 23794568 23795798 + A830092H15Rik antisense antisense MGP_C3HHeJ_T0004132.1 MGP_C3HHeJ_G0003638.1 mouse_genomes_project 3 23795370 23796801 + A830092H15Rik antisense antisense MGP_C3HHeJ_T0007399.1 MGP_C3HHeJ_G0006057.1 mouse_genomes_project 3 20791943 20847057 + 4930412E21Rik lincRNA lincRNA MGP_C3HHeJ_T0061116.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87226686 87238350 - MGP_C3HHeJ_P0061116 Lrrc71 protein_coding protein_coding MGP_C3HHeJ_T0061117.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87227658 87238352 - Lrrc71 protein_coding retained_intron MGP_C3HHeJ_T0061118.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87227709 87228336 - Lrrc71 protein_coding processed_transcript MGP_C3HHeJ_T0061119.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87228749 87230815 - MGP_C3HHeJ_P0061119 Lrrc71 protein_coding protein_coding MGP_C3HHeJ_T0061120.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87228844 87238191 - MGP_C3HHeJ_P0061120 Lrrc71 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061121.1 MGP_C3HHeJ_G0027082.1 mouse_genomes_project 3 87235009 87238321 - Lrrc71 protein_coding retained_intron MGP_C3HHeJ_T0017741.1 MGP_C3HHeJ_G0015270.1 mouse_genomes_project 3 87731936 87734795 + AW047730 processed_transcript processed_transcript MGP_C3HHeJ_T0017742.1 MGP_C3HHeJ_G0015270.1 mouse_genomes_project 3 87731948 87734795 + AW047730 processed_transcript processed_transcript MGP_C3HHeJ_T0099258.1 MGP_C3HHeJ_G0037452.1 mouse_genomes_project 3 62072240 62072346 + Gm24946 snRNA snRNA MGP_C3HHeJ_T0007671.1 MGP_C3HHeJ_G0006271.1 mouse_genomes_project 3 147954465 147956646 + Gm17501 lincRNA lincRNA MGP_C3HHeJ_T0007672.1 MGP_C3HHeJ_G0006271.1 mouse_genomes_project 3 147956266 147998115 + Gm17501 lincRNA lincRNA MGP_C3HHeJ_T0004311.1 MGP_C3HHeJ_G0003759.1 mouse_genomes_project 3 139842733 139844547 - Gm43403 antisense antisense MGP_C3HHeJ_T0004312.1 MGP_C3HHeJ_G0003759.1 mouse_genomes_project 3 139843860 139844357 - Gm43403 antisense antisense MGP_C3HHeJ_T0013766.1 MGP_C3HHeJ_G0011870.1 mouse_genomes_project 3 8111793 8112304 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064161.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833672 160866115 + MGP_C3HHeJ_P0064161 Lrrc40 protein_coding protein_coding MGP_C3HHeJ_T0064162.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833710 160864717 + MGP_C3HHeJ_P0064162 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064163.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833712 160864717 + MGP_C3HHeJ_P0064163 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064164.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833732 160849429 + MGP_C3HHeJ_P0064164 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064165.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833760 160849418 + MGP_C3HHeJ_P0064165 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064166.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160833870 160849364 + MGP_C3HHeJ_P0064166 Lrrc40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064167.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160859869 160864174 + Lrrc40 protein_coding retained_intron MGP_C3HHeJ_T0064168.1 MGP_C3HHeJ_G0027716.1 mouse_genomes_project 3 160860270 160861648 + Lrrc40 protein_coding retained_intron MGP_C3HHeJ_T0001320.1 MGP_C3HHeJ_G0001251.1 mouse_genomes_project 3 134573234 134575201 + TEC TEC MGP_C3HHeJ_T0001217.1 MGP_C3HHeJ_G0001149.1 mouse_genomes_project 3 78822812 78824101 - TEC TEC MGP_C3HHeJ_T0004211.1 MGP_C3HHeJ_G0003695.1 mouse_genomes_project 3 89892538 89894741 - 4930537H20Rik antisense antisense MGP_C3HHeJ_T0062197.1 MGP_C3HHeJ_G0027318.1 mouse_genomes_project 3 96522625 96523128 + MGP_C3HHeJ_P0062197 Hist2h3b protein_coding protein_coding MGP_C3HHeJ_T0013748.1 MGP_C3HHeJ_G0011852.1 mouse_genomes_project 3 3940223 3940569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098411.1 MGP_C3HHeJ_G0036616.1 mouse_genomes_project 3 94623058 94625217 - Gm43773 sense_intronic sense_intronic MGP_C3HHeJ_T0101972.1 MGP_C3HHeJ_G0039937.1 mouse_genomes_project 3 107299003 107300105 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001302.1 MGP_C3HHeJ_G0001234.1 mouse_genomes_project 3 129398770 129400756 - TEC TEC MGP_C3HHeJ_T0061014.1 MGP_C3HHeJ_G0027058.1 mouse_genomes_project 3 83516511 83517540 + MGP_C3HHeJ_P0061014 Gm6525 protein_coding protein_coding MGP_C3HHeJ_T0013874.1 MGP_C3HHeJ_G0011978.1 mouse_genomes_project 3 45548467 45549177 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062233.1 MGP_C3HHeJ_G0027332.1 mouse_genomes_project 3 96972520 96993990 + MGP_C3HHeJ_P0062233 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062234.1 MGP_C3HHeJ_G0027332.1 mouse_genomes_project 3 96972604 96994020 + MGP_C3HHeJ_P0062234 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062235.1 MGP_C3HHeJ_G0027332.1 mouse_genomes_project 3 96982975 96986108 + protein_coding processed_transcript MGP_C3HHeJ_T0060915.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78852323 78954569 - MGP_C3HHeJ_P0060915 Rxfp1 protein_coding protein_coding MGP_C3HHeJ_T0060916.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78854816 78954655 - MGP_C3HHeJ_P0060916 Rxfp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060917.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78862351 78864234 - Rxfp1 protein_coding retained_intron MGP_C3HHeJ_T0060918.1 MGP_C3HHeJ_G0027033.1 mouse_genomes_project 3 78866015 78878499 - Rxfp1 protein_coding processed_transcript MGP_C3HHeJ_T0061394.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88667605 88678520 + MGP_C3HHeJ_P0061394 Pklr protein_coding protein_coding MGP_C3HHeJ_T0061395.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88667637 88668919 + Pklr protein_coding processed_transcript MGP_C3HHeJ_T0061396.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88668035 88678705 + MGP_C3HHeJ_P0061396 Pklr protein_coding protein_coding MGP_C3HHeJ_T0061397.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88668042 88673465 + MGP_C3HHeJ_P0061397 Pklr protein_coding protein_coding MGP_C3HHeJ_T0061398.1 MGP_C3HHeJ_G0027131.1 mouse_genomes_project 3 88668086 88672833 + Pklr protein_coding processed_transcript MGP_C3HHeJ_T0001326.1 MGP_C3HHeJ_G0001257.1 mouse_genomes_project 3 137324400 137332128 - TEC TEC MGP_C3HHeJ_T0060995.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229257 83376781 - MGP_C3HHeJ_P0060995 D930015E06Rik protein_coding protein_coding MGP_C3HHeJ_T0060996.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229811 83376743 - MGP_C3HHeJ_P0060996 D930015E06Rik protein_coding protein_coding MGP_C3HHeJ_T0060997.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229811 83376781 - MGP_C3HHeJ_P0060997 D930015E06Rik protein_coding protein_coding MGP_C3HHeJ_T0060998.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83229812 83241242 - D930015E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0060999.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83232362 83239612 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061000.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83232376 83241568 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061001.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83253382 83300716 - D930015E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0061002.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83272654 83276467 - D930015E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0061003.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83366937 83376734 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061004.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83373783 83376767 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0061005.1 MGP_C3HHeJ_G0027055.1 mouse_genomes_project 3 83373981 83376740 - D930015E06Rik protein_coding retained_intron MGP_C3HHeJ_T0014006.1 MGP_C3HHeJ_G0012110.1 mouse_genomes_project 3 89385158 89385684 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060795.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744853 67848577 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060796.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744853 67848561 - MGP_C3HHeJ_P0060796 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060797.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744879 67848588 - MGP_C3HHeJ_P0060797 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060798.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67744879 67837282 - MGP_C3HHeJ_P0060798 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060799.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67745999 67766830 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060800.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67761593 67761943 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060801.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67764272 67848516 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0060802.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67783046 67816548 - Ift80 protein_coding processed_transcript MGP_C3HHeJ_T0060803.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67806443 67848495 - MGP_C3HHeJ_P0060803 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060804.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67810728 67848502 - MGP_C3HHeJ_P0060804 Ift80 protein_coding protein_coding MGP_C3HHeJ_T0060805.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67816106 67848406 - Ift80 protein_coding processed_transcript MGP_C3HHeJ_T0060806.1 MGP_C3HHeJ_G0027007.1 mouse_genomes_project 3 67846312 67848543 - Ift80 protein_coding retained_intron MGP_C3HHeJ_T0013767.1 MGP_C3HHeJ_G0011871.1 mouse_genomes_project 3 8341794 8342548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062932.1 MGP_C3HHeJ_G0027494.1 mouse_genomes_project 3 110121003 110162637 + MGP_C3HHeJ_P0062932 Slc25a54 protein_coding protein_coding MGP_C3HHeJ_T0062933.1 MGP_C3HHeJ_G0027494.1 mouse_genomes_project 3 110121033 110162532 + MGP_C3HHeJ_P0062933 Slc25a54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013841.1 MGP_C3HHeJ_G0011945.1 mouse_genomes_project 3 34951247 34952207 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013949.1 MGP_C3HHeJ_G0012053.1 mouse_genomes_project 3 68436761 68437775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060892.1 MGP_C3HHeJ_G0027028.1 mouse_genomes_project 3 78536866 78633390 + MGP_C3HHeJ_P0060892 protein_coding protein_coding MGP_C3HHeJ_T0060893.1 MGP_C3HHeJ_G0027028.1 mouse_genomes_project 3 78546864 78668350 + MGP_C3HHeJ_P0060893 protein_coding protein_coding MGP_C3HHeJ_T0060894.1 MGP_C3HHeJ_G0027028.1 mouse_genomes_project 3 78546867 78634648 + MGP_C3HHeJ_P0060894 protein_coding protein_coding MGP_C3HHeJ_T0013979.1 MGP_C3HHeJ_G0012083.1 mouse_genomes_project 3 77327361 77328301 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062649.1 MGP_C3HHeJ_G0027425.1 mouse_genomes_project 3 106795210 106805092 - MGP_C3HHeJ_P0062649 I830077J02Rik protein_coding protein_coding MGP_C3HHeJ_T0062650.1 MGP_C3HHeJ_G0027425.1 mouse_genomes_project 3 106797259 106798848 - MGP_C3HHeJ_P0062650 I830077J02Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062651.1 MGP_C3HHeJ_G0027425.1 mouse_genomes_project 3 106798534 106805044 - I830077J02Rik protein_coding retained_intron MGP_C3HHeJ_T0001226.1 MGP_C3HHeJ_G0001158.1 mouse_genomes_project 3 89914112 89919610 + TEC TEC MGP_C3HHeJ_T0011443.1 MGP_C3HHeJ_G0009576.1 mouse_genomes_project 3 57432366 57432442 + Gm27793 misc_RNA misc_RNA MGP_C3HHeJ_T0062637.1 MGP_C3HHeJ_G0027422.1 mouse_genomes_project 3 106588799 106614394 - MGP_C3HHeJ_P0062637 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062638.1 MGP_C3HHeJ_G0027422.1 mouse_genomes_project 3 106600517 106668023 - MGP_C3HHeJ_P0062638 protein_coding protein_coding MGP_C3HHeJ_T0099300.1 MGP_C3HHeJ_G0037494.1 mouse_genomes_project 3 111621054 111621159 - Gm26076 snRNA snRNA MGP_C3HHeJ_T0007661.1 MGP_C3HHeJ_G0006263.1 mouse_genomes_project 3 145822666 145863963 - Gm6260 lincRNA lincRNA MGP_C3HHeJ_T0007662.1 MGP_C3HHeJ_G0006263.1 mouse_genomes_project 3 145846535 145864030 - Gm6260 lincRNA lincRNA MGP_C3HHeJ_T0061251.1 MGP_C3HHeJ_G0027109.1 mouse_genomes_project 3 87910586 87912281 - MGP_C3HHeJ_P0061251 Bglap protein_coding protein_coding MGP_C3HHeJ_T0013798.1 MGP_C3HHeJ_G0011902.1 mouse_genomes_project 3 17020817 17021868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098421.1 MGP_C3HHeJ_G0036626.1 mouse_genomes_project 3 101299682 101301527 - Gm43463 sense_intronic sense_intronic MGP_C3HHeJ_T0062575.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104823983 105034482 - MGP_C3HHeJ_P0062575 Magi3 protein_coding protein_coding MGP_C3HHeJ_T0062576.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104824349 105034211 - MGP_C3HHeJ_P0062576 Magi3 protein_coding protein_coding MGP_C3HHeJ_T0062577.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104827193 105034346 - MGP_C3HHeJ_P0062577 Magi3 protein_coding protein_coding MGP_C3HHeJ_T0062578.1 MGP_C3HHeJ_G0027407.1 mouse_genomes_project 3 104874349 104876154 - Magi3 protein_coding retained_intron MGP_C3HHeJ_T0007550.1 MGP_C3HHeJ_G0006171.1 mouse_genomes_project 3 98296750 98333349 + Gm5544 lincRNA lincRNA MGP_C3HHeJ_T0007640.1 MGP_C3HHeJ_G0006245.1 mouse_genomes_project 3 139910775 139911219 - Gm43689 lincRNA lincRNA MGP_C3HHeJ_T0063957.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806534 154832981 + MGP_C3HHeJ_P0063957 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063958.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806585 154816611 + MGP_C3HHeJ_P0063958 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063959.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806594 154828910 + MGP_C3HHeJ_P0063959 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063960.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806604 154820978 + MGP_C3HHeJ_P0063960 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063961.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806610 154828909 + MGP_C3HHeJ_P0063961 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063962.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806626 154815827 + MGP_C3HHeJ_P0063962 Fubp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063963.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806631 154828909 + MGP_C3HHeJ_P0063963 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063964.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806631 154831923 + MGP_C3HHeJ_P0063964 Fubp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063965.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154806633 154832981 + MGP_C3HHeJ_P0063965 Fubp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063966.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154813542 154814616 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063967.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154817474 154820246 + MGP_C3HHeJ_P0063967 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063968.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154817996 154819092 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063969.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154819409 154828910 + MGP_C3HHeJ_P0063969 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063970.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154819422 154828927 + MGP_C3HHeJ_P0063970 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063971.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154819432 154831989 + MGP_C3HHeJ_P0063971 Fubp1 protein_coding protein_coding MGP_C3HHeJ_T0063972.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154820839 154831557 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063973.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154821982 154824385 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063974.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154823416 154827448 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0063975.1 MGP_C3HHeJ_G0027689.1 mouse_genomes_project 3 154823978 154828646 + Fubp1 protein_coding retained_intron MGP_C3HHeJ_T0059753.1 MGP_C3HHeJ_G0026794.1 mouse_genomes_project 3 12813064 12858918 - MGP_C3HHeJ_P0059753 protein_coding protein_coding MGP_C3HHeJ_T0059754.1 MGP_C3HHeJ_G0026794.1 mouse_genomes_project 3 12856313 13061141 - MGP_C3HHeJ_P0059754 protein_coding protein_coding MGP_C3HHeJ_T0001346.1 MGP_C3HHeJ_G0001277.1 mouse_genomes_project 3 154971991 154973435 - TEC TEC MGP_C3HHeJ_T0010472.1 MGP_C3HHeJ_G0008605.1 mouse_genomes_project 3 136078697 136078776 - Mir1895 miRNA miRNA MGP_C3HHeJ_T0001154.1 MGP_C3HHeJ_G0001088.1 mouse_genomes_project 3 49687647 49690143 - TEC TEC MGP_C3HHeJ_T0007665.1 MGP_C3HHeJ_G0006266.1 mouse_genomes_project 3 146033957 146118119 - Gm42707 lincRNA lincRNA MGP_C3HHeJ_T0007667.1 MGP_C3HHeJ_G0006266.1 mouse_genomes_project 3 146073115 146117743 - Gm42707 lincRNA lincRNA MGP_C3HHeJ_T0014153.1 MGP_C3HHeJ_G0012257.1 mouse_genomes_project 3 134458683 134459071 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062177.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413812 96423639 + Mtmr11 protein_coding retained_intron MGP_C3HHeJ_T0062178.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413812 96423640 + MGP_C3HHeJ_P0062178 Mtmr11 protein_coding protein_coding MGP_C3HHeJ_T0062179.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413893 96423640 + MGP_C3HHeJ_P0062179 Mtmr11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062180.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96413974 96415198 + Mtmr11 protein_coding retained_intron MGP_C3HHeJ_T0062181.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96414390 96423640 + Mtmr11 protein_coding processed_transcript MGP_C3HHeJ_T0062182.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96420797 96421916 + Mtmr11 protein_coding processed_transcript MGP_C3HHeJ_T0062183.1 MGP_C3HHeJ_G0027309.1 mouse_genomes_project 3 96422507 96423392 + Mtmr11 protein_coding processed_transcript MGP_C3HHeJ_T0014165.1 MGP_C3HHeJ_G0012269.1 mouse_genomes_project 3 137061246 137061922 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004162.1 MGP_C3HHeJ_G0003659.1 mouse_genomes_project 3 43386106 43408845 - 1700027H10Rik antisense antisense MGP_C3HHeJ_T0010456.1 MGP_C3HHeJ_G0008589.1 mouse_genomes_project 3 104461160 104461246 - Gm25325 miRNA miRNA MGP_C3HHeJ_T0099294.1 MGP_C3HHeJ_G0037488.1 mouse_genomes_project 3 104224702 104224809 - Gm25199 snRNA snRNA MGP_C3HHeJ_T0060762.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202059 66228045 + MGP_C3HHeJ_P0060762 Mlf1 protein_coding protein_coding MGP_C3HHeJ_T0060763.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202087 66208631 + Mlf1 protein_coding processed_transcript MGP_C3HHeJ_T0060764.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202104 66223346 + MGP_C3HHeJ_P0060764 Mlf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060765.1 MGP_C3HHeJ_G0026996.1 mouse_genomes_project 3 66202110 66228050 + MGP_C3HHeJ_P0060765 Mlf1 protein_coding protein_coding MGP_C3HHeJ_T0061776.1 MGP_C3HHeJ_G0027204.1 mouse_genomes_project 3 92186911 92188645 + MGP_C3HHeJ_P0061776 Sprr2d protein_coding protein_coding MGP_C3HHeJ_T0004302.1 MGP_C3HHeJ_G0003753.1 mouse_genomes_project 3 132948135 132952156 - Gm43352 antisense antisense MGP_C3HHeJ_T0099276.1 MGP_C3HHeJ_G0037470.1 mouse_genomes_project 3 88624181 88624285 - Gm22935 snRNA snRNA MGP_C3HHeJ_T0062936.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399261 110747301 + MGP_C3HHeJ_P0062936 Vav3 protein_coding protein_coding MGP_C3HHeJ_T0062937.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399291 110626503 + Vav3 protein_coding retained_intron MGP_C3HHeJ_T0062938.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399647 110747303 + MGP_C3HHeJ_P0062938 Vav3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062939.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110399714 110506644 + Vav3 protein_coding processed_transcript MGP_C3HHeJ_T0062940.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110556898 110565809 + Vav3 protein_coding processed_transcript MGP_C3HHeJ_T0062941.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110636851 110747297 + MGP_C3HHeJ_P0062941 Vav3 protein_coding protein_coding MGP_C3HHeJ_T0062942.1 MGP_C3HHeJ_G0027496.1 mouse_genomes_project 3 110706192 110744502 + Vav3 protein_coding processed_transcript MGP_C3HHeJ_T0098428.1 MGP_C3HHeJ_G0036633.1 mouse_genomes_project 3 102834629 102837511 + 4632404M16Rik sense_intronic sense_intronic MGP_C3HHeJ_T0062789.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108960073 108965999 - MGP_C3HHeJ_P0062789 protein_coding protein_coding MGP_C3HHeJ_T0062790.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108961445 108965906 - MGP_C3HHeJ_P0062790 protein_coding protein_coding MGP_C3HHeJ_T0062791.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108961503 108965939 - MGP_C3HHeJ_P0062791 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062792.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108964526 108965967 - protein_coding retained_intron MGP_C3HHeJ_T0062793.1 MGP_C3HHeJ_G0027463.1 mouse_genomes_project 3 108965027 108965967 - protein_coding retained_intron MGP_C3HHeJ_T0063000.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117372153 117392170 - MGP_C3HHeJ_P0063000 Vcam1 protein_coding protein_coding MGP_C3HHeJ_T0063001.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117378588 117382673 - Vcam1 protein_coding retained_intron MGP_C3HHeJ_T0063002.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117384225 117391939 - MGP_C3HHeJ_P0063002 Vcam1 protein_coding protein_coding MGP_C3HHeJ_T0063003.1 MGP_C3HHeJ_G0027508.1 mouse_genomes_project 3 117386564 117391411 - MGP_C3HHeJ_P0063003 Vcam1 protein_coding protein_coding MGP_C3HHeJ_T0014193.1 MGP_C3HHeJ_G0012297.1 mouse_genomes_project 3 144640432 144641068 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007396.1 MGP_C3HHeJ_G0006054.1 mouse_genomes_project 3 19425504 19427235 - Gm43672 lincRNA lincRNA MGP_C3HHeJ_T0061777.1 MGP_C3HHeJ_G0027205.1 mouse_genomes_project 3 92200255 92201562 + MGP_C3HHeJ_P0061777 Sprr2e protein_coding protein_coding MGP_C3HHeJ_T0098448.1 MGP_C3HHeJ_G0036653.1 mouse_genomes_project 3 105301180 105307223 - Gm43696 sense_intronic sense_intronic MGP_C3HHeJ_T0007634.1 MGP_C3HHeJ_G0006239.1 mouse_genomes_project 3 138370705 138385045 - 1700030L20Rik lincRNA lincRNA MGP_C3HHeJ_T0007629.1 MGP_C3HHeJ_G0006235.1 mouse_genomes_project 3 135996656 136027547 + Gm43192 lincRNA lincRNA MGP_C3HHeJ_T0004235.1 MGP_C3HHeJ_G0003711.1 mouse_genomes_project 3 97138195 97140466 - 4930442L01Rik antisense antisense MGP_C3HHeJ_T0062980.1 MGP_C3HHeJ_G0027503.1 mouse_genomes_project 3 116143919 116361511 + MGP_C3HHeJ_P0062980 Olfm3 protein_coding protein_coding MGP_C3HHeJ_T0062981.1 MGP_C3HHeJ_G0027503.1 mouse_genomes_project 3 116144476 116356774 + MGP_C3HHeJ_P0062981 Olfm3 protein_coding protein_coding MGP_C3HHeJ_T0062982.1 MGP_C3HHeJ_G0027503.1 mouse_genomes_project 3 116316077 116361056 + MGP_C3HHeJ_P0062982 Olfm3 protein_coding protein_coding MGP_C3HHeJ_T0063893.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101236 149188911 - MGP_C3HHeJ_P0063893 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063894.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101527 149144673 - MGP_C3HHeJ_P0063894 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063895.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101527 149144153 - MGP_C3HHeJ_P0063895 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063896.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149101529 149155296 - MGP_C3HHeJ_P0063896 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063897.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149103990 149118447 - Prkacb protein_coding retained_intron MGP_C3HHeJ_T0063898.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149120792 149138462 - MGP_C3HHeJ_P0063898 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063899.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149120792 149164561 - MGP_C3HHeJ_P0063899 Prkacb protein_coding protein_coding MGP_C3HHeJ_T0063900.1 MGP_C3HHeJ_G0027680.1 mouse_genomes_project 3 149185468 149188941 - Prkacb protein_coding retained_intron MGP_C3HHeJ_T0013799.1 MGP_C3HHeJ_G0011903.1 mouse_genomes_project 3 17082114 17082497 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004280.1 MGP_C3HHeJ_G0003736.1 mouse_genomes_project 3 117922571 117924400 - Gm42893 antisense antisense MGP_C3HHeJ_T0013752.1 MGP_C3HHeJ_G0011856.1 mouse_genomes_project 3 5414955 5416807 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013962.1 MGP_C3HHeJ_G0012066.1 mouse_genomes_project 3 71016944 71017449 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007475.1 MGP_C3HHeJ_G0006115.1 mouse_genomes_project 3 57126019 57222323 + 4930593A02Rik lincRNA lincRNA MGP_C3HHeJ_T0007476.1 MGP_C3HHeJ_G0006115.1 mouse_genomes_project 3 57168737 57232132 + 4930593A02Rik lincRNA lincRNA MGP_C3HHeJ_T0063007.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117544689 117702416 - MGP_C3HHeJ_P0063007 Cdc14a protein_coding protein_coding MGP_C3HHeJ_T0063008.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117544689 117702370 - MGP_C3HHeJ_P0063008 Cdc14a protein_coding protein_coding MGP_C3HHeJ_T0063009.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117595865 117701033 - MGP_C3HHeJ_P0063009 Cdc14a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063010.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117600495 117702416 - Cdc14a protein_coding retained_intron MGP_C3HHeJ_T0063011.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117677220 117701408 - Cdc14a protein_coding retained_intron MGP_C3HHeJ_T0063012.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117680422 117682524 - Cdc14a protein_coding retained_intron MGP_C3HHeJ_T0063013.1 MGP_C3HHeJ_G0027510.1 mouse_genomes_project 3 117681143 117702279 - Cdc14a protein_coding processed_transcript MGP_C3HHeJ_T0101414.1 MGP_C3HHeJ_G0039448.1 mouse_genomes_project 3 94853332 94856927 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101415.1 MGP_C3HHeJ_G0039448.1 mouse_genomes_project 3 94853383 94871336 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0060681.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302809 62382055 - MGP_C3HHeJ_P0060681 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060682.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302813 62462314 - MGP_C3HHeJ_P0060682 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060683.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62308934 - Plch1 protein_coding retained_intron MGP_C3HHeJ_T0060684.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62348293 - Plch1 protein_coding retained_intron MGP_C3HHeJ_T0060685.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62462532 - MGP_C3HHeJ_P0060685 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060686.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62462266 - MGP_C3HHeJ_P0060686 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060687.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302816 62462558 - MGP_C3HHeJ_P0060687 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060688.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62302817 62462266 - MGP_C3HHeJ_P0060688 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060689.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62303310 62512449 - MGP_C3HHeJ_P0060689 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060690.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62305512 62308623 - MGP_C3HHeJ_P0060690 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060691.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62308395 62462634 - MGP_C3HHeJ_P0060691 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060692.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62389783 62512419 - MGP_C3HHeJ_P0060692 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0060693.1 MGP_C3HHeJ_G0026978.1 mouse_genomes_project 3 62481441 62512350 - MGP_C3HHeJ_P0060693 Plch1 protein_coding protein_coding MGP_C3HHeJ_T0013858.1 MGP_C3HHeJ_G0011962.1 mouse_genomes_project 3 39375659 39376122 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004169.1 MGP_C3HHeJ_G0003665.1 mouse_genomes_project 3 51728195 51734727 + Gm16206 antisense antisense MGP_C3HHeJ_T0098459.1 MGP_C3HHeJ_G0036664.1 mouse_genomes_project 3 106649580 106651733 - Gm43330 sense_intronic sense_intronic MGP_C3HHeJ_T0059854.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22848260 23795880 - MGP_C3HHeJ_P0059854 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059855.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22854984 23581398 - MGP_C3HHeJ_P0059855 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059856.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22854984 23581398 - MGP_C3HHeJ_P0059856 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059857.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 22856604 23602673 - MGP_C3HHeJ_P0059857 Nlgn1 protein_coding protein_coding MGP_C3HHeJ_T0059858.1 MGP_C3HHeJ_G0026819.1 mouse_genomes_project 3 23579333 23795290 - Nlgn1 protein_coding retained_intron MGP_C3HHeJ_T0007562.1 MGP_C3HHeJ_G0006181.1 mouse_genomes_project 3 103085753 103087535 + Gm43242 lincRNA lincRNA MGP_C3HHeJ_T0004332.1 MGP_C3HHeJ_G0003774.1 mouse_genomes_project 3 156490037 156505905 - Asb17os antisense antisense MGP_C3HHeJ_T0004333.1 MGP_C3HHeJ_G0003774.1 mouse_genomes_project 3 156503876 156505928 - Asb17os antisense antisense MGP_C3HHeJ_T0007511.1 MGP_C3HHeJ_G0006145.1 mouse_genomes_project 3 83697919 83721004 - 4930565D16Rik lincRNA lincRNA MGP_C3HHeJ_T0010447.1 MGP_C3HHeJ_G0008580.1 mouse_genomes_project 3 91846896 91847006 - Gm23697 miRNA miRNA MGP_C3HHeJ_T0063435.1 MGP_C3HHeJ_G0027584.1 mouse_genomes_project 3 132756261 132757768 - MGP_C3HHeJ_P0063435 protein_coding protein_coding MGP_C3HHeJ_T0061886.1 MGP_C3HHeJ_G0027261.1 mouse_genomes_project 3 94703118 94747228 - MGP_C3HHeJ_P0061886 Tuft1 protein_coding protein_coding MGP_C3HHeJ_T0061887.1 MGP_C3HHeJ_G0027261.1 mouse_genomes_project 3 94703355 94747156 - MGP_C3HHeJ_P0061887 Tuft1 protein_coding protein_coding MGP_C3HHeJ_T0061888.1 MGP_C3HHeJ_G0027261.1 mouse_genomes_project 3 94704527 94706614 - Tuft1 protein_coding retained_intron MGP_C3HHeJ_T0099307.1 MGP_C3HHeJ_G0037501.1 mouse_genomes_project 3 133858101 133858208 - Gm22421 snRNA snRNA MGP_C3HHeJ_T0004290.1 MGP_C3HHeJ_G0003743.1 mouse_genomes_project 3 125042762 125045882 - Gm43591 antisense antisense MGP_C3HHeJ_T0001169.1 MGP_C3HHeJ_G0001101.1 mouse_genomes_project 3 50213122 50213741 - TEC TEC MGP_C3HHeJ_T0061686.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89893415 89968364 + MGP_C3HHeJ_P0061686 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061687.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89893421 89956319 + Gatad2b protein_coding retained_intron MGP_C3HHeJ_T0061688.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89894111 89961880 + Gatad2b protein_coding retained_intron MGP_C3HHeJ_T0061689.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89894840 89962140 + MGP_C3HHeJ_P0061689 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061690.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89943596 89946039 + Gatad2b protein_coding retained_intron MGP_C3HHeJ_T0061691.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89944221 89961887 + MGP_C3HHeJ_P0061691 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061692.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89944223 89961846 + MGP_C3HHeJ_P0061692 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0061693.1 MGP_C3HHeJ_G0027176.1 mouse_genomes_project 3 89955184 89959901 + MGP_C3HHeJ_P0061693 Gatad2b protein_coding protein_coding MGP_C3HHeJ_T0063515.1 MGP_C3HHeJ_G0027601.1 mouse_genomes_project 3 136714965 136825143 + MGP_C3HHeJ_P0063515 Tacr3 protein_coding protein_coding MGP_C3HHeJ_T0001365.1 MGP_C3HHeJ_G0001296.1 mouse_genomes_project 3 160975758 160977106 + TEC TEC MGP_C3HHeJ_T0007554.1 MGP_C3HHeJ_G0006175.1 mouse_genomes_project 3 101106805 101142477 + Gm12474 lincRNA lincRNA MGP_C3HHeJ_T0007701.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159299285 159314205 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007702.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159299293 159314100 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007703.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159300947 159314193 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0007704.1 MGP_C3HHeJ_G0006292.1 mouse_genomes_project 3 159312373 159314264 - 4930570G19Rik lincRNA lincRNA MGP_C3HHeJ_T0062362.1 MGP_C3HHeJ_G0027364.1 mouse_genomes_project 3 99799733 99872170 + MGP_C3HHeJ_P0062362 Tbx15 protein_coding protein_coding MGP_C3HHeJ_T0062363.1 MGP_C3HHeJ_G0027364.1 mouse_genomes_project 3 99812996 99913409 + MGP_C3HHeJ_P0062363 Tbx15 protein_coding protein_coding MGP_C3HHeJ_T0062364.1 MGP_C3HHeJ_G0027364.1 mouse_genomes_project 3 99855578 99875345 + MGP_C3HHeJ_P0062364 Tbx15 protein_coding protein_coding MGP_C3HHeJ_T0004286.1 MGP_C3HHeJ_G0003740.1 mouse_genomes_project 3 123990282 124023489 - Gm42836 antisense antisense MGP_C3HHeJ_T0063288.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128562845 128647235 - MGP_C3HHeJ_P0063288 protein_coding protein_coding MGP_C3HHeJ_T0063289.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128562847 128565230 - protein_coding retained_intron MGP_C3HHeJ_T0063290.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128562847 128585970 - MGP_C3HHeJ_P0063290 protein_coding protein_coding MGP_C3HHeJ_T0063291.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128565169 128571096 - MGP_C3HHeJ_P0063291 protein_coding protein_coding MGP_C3HHeJ_T0063292.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128565170 128571096 - MGP_C3HHeJ_P0063292 protein_coding protein_coding MGP_C3HHeJ_T0063293.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128566884 128569652 - protein_coding retained_intron MGP_C3HHeJ_T0063294.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128574466 128576388 - protein_coding retained_intron MGP_C3HHeJ_T0063295.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128580355 128598649 - MGP_C3HHeJ_P0063295 protein_coding protein_coding MGP_C3HHeJ_T0063296.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128582702 128598448 - MGP_C3HHeJ_P0063296 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063297.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128589695 129068665 - MGP_C3HHeJ_P0063297 protein_coding protein_coding MGP_C3HHeJ_T0063298.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128592754 128647211 - protein_coding retained_intron MGP_C3HHeJ_T0063299.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128601602 129164279 - MGP_C3HHeJ_P0063299 protein_coding protein_coding MGP_C3HHeJ_T0063300.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128602383 129068604 - MGP_C3HHeJ_P0063300 protein_coding protein_coding MGP_C3HHeJ_T0063301.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128664000 128672938 - protein_coding retained_intron MGP_C3HHeJ_T0063302.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128673463 129068637 - MGP_C3HHeJ_P0063302 protein_coding protein_coding MGP_C3HHeJ_T0063303.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128673533 129068637 - MGP_C3HHeJ_P0063303 protein_coding protein_coding MGP_C3HHeJ_T0063304.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128679682 128808016 - MGP_C3HHeJ_P0063304 protein_coding protein_coding MGP_C3HHeJ_T0063305.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128679682 129068573 - MGP_C3HHeJ_P0063305 protein_coding protein_coding MGP_C3HHeJ_T0063306.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128729141 128871360 - MGP_C3HHeJ_P0063306 protein_coding protein_coding MGP_C3HHeJ_T0063307.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128729746 128807909 - protein_coding retained_intron MGP_C3HHeJ_T0063308.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128731556 129068560 - MGP_C3HHeJ_P0063308 protein_coding protein_coding MGP_C3HHeJ_T0063309.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128805389 128807875 - protein_coding retained_intron MGP_C3HHeJ_T0063310.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128983890 129068601 - protein_coding retained_intron MGP_C3HHeJ_T0063311.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 128985520 129163931 - protein_coding retained_intron MGP_C3HHeJ_T0063312.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 129161035 129164189 - protein_coding retained_intron MGP_C3HHeJ_T0063313.1 MGP_C3HHeJ_G0027560.1 mouse_genomes_project 3 129163591 129163930 - MGP_C3HHeJ_P0063313 protein_coding protein_coding MGP_C3HHeJ_T0007649.1 MGP_C3HHeJ_G0006252.1 mouse_genomes_project 3 144999173 145010197 + 9530052C20Rik lincRNA lincRNA MGP_C3HHeJ_T0064117.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318512 160332701 + MGP_C3HHeJ_P0064117 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0064118.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318711 160332627 + MGP_C3HHeJ_P0064118 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0064119.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318711 160332627 + MGP_C3HHeJ_P0064119 Zranb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064120.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318728 160327497 + MGP_C3HHeJ_P0064120 Zranb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064121.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318740 160332667 + MGP_C3HHeJ_P0064121 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0064122.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160318777 160331214 + Zranb2 protein_coding retained_intron MGP_C3HHeJ_T0064123.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160323345 160326061 + Zranb2 protein_coding retained_intron MGP_C3HHeJ_T0064124.1 MGP_C3HHeJ_G0027711.1 mouse_genomes_project 3 160324946 160331094 + MGP_C3HHeJ_P0064124 Zranb2 protein_coding protein_coding MGP_C3HHeJ_T0011457.1 MGP_C3HHeJ_G0009590.1 mouse_genomes_project 3 156258845 156259113 + Gm22136 misc_RNA misc_RNA MGP_C3HHeJ_T0101965.1 MGP_C3HHeJ_G0039930.1 mouse_genomes_project 3 94342375 94342570 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014007.1 MGP_C3HHeJ_G0012111.1 mouse_genomes_project 3 90276927 90277080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061785.1 MGP_C3HHeJ_G0027212.1 mouse_genomes_project 3 92292468 92294425 - MGP_C3HHeJ_P0061785 Sprr1b protein_coding protein_coding MGP_C3HHeJ_T0001164.1 MGP_C3HHeJ_G0001097.1 mouse_genomes_project 3 50092688 50095528 - TEC TEC MGP_C3HHeJ_T0017766.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144639 117151534 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017767.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144639 117151498 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017768.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144641 117151357 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017769.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117144844 117151508 - A930005H10Rik processed_transcript antisense MGP_C3HHeJ_T0017770.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117149398 117151501 - A930005H10Rik processed_transcript retained_intron MGP_C3HHeJ_T0017771.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117149497 117151292 - A930005H10Rik processed_transcript retained_intron MGP_C3HHeJ_T0017772.1 MGP_C3HHeJ_G0015282.1 mouse_genomes_project 3 117151226 117151534 - A930005H10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0063581.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137984451 138258217 - MGP_C3HHeJ_P0063581 Bank1 protein_coding protein_coding MGP_C3HHeJ_T0063582.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137984451 138258197 - MGP_C3HHeJ_P0063582 Bank1 protein_coding protein_coding MGP_C3HHeJ_T0063583.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137984537 138258176 - MGP_C3HHeJ_P0063583 Bank1 protein_coding protein_coding MGP_C3HHeJ_T0063584.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137985010 137985805 - Bank1 protein_coding retained_intron MGP_C3HHeJ_T0063585.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 137985025 137987192 - Bank1 protein_coding retained_intron MGP_C3HHeJ_T0063586.1 MGP_C3HHeJ_G0027611.1 mouse_genomes_project 3 138139249 138176997 - Bank1 protein_coding retained_intron MGP_C3HHeJ_T0098440.1 MGP_C3HHeJ_G0036645.1 mouse_genomes_project 3 104933715 104935575 - Gm42699 sense_intronic sense_intronic MGP_C3HHeJ_T0010474.1 MGP_C3HHeJ_G0008607.1 mouse_genomes_project 3 138754727 138754844 - Gm44327 miRNA miRNA MGP_C3HHeJ_T0004232.1 MGP_C3HHeJ_G0003709.1 mouse_genomes_project 3 96521046 96524276 - Gm20628 antisense antisense MGP_C3HHeJ_T0001225.1 MGP_C3HHeJ_G0001157.1 mouse_genomes_project 3 88745071 88747812 + TEC TEC MGP_C3HHeJ_T0014206.1 MGP_C3HHeJ_G0012310.1 mouse_genomes_project 3 151085287 151085803 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060151.1 MGP_C3HHeJ_G0026872.1 mouse_genomes_project 3 33993501 34037065 - MGP_C3HHeJ_P0060151 Qrfpr protein_coding protein_coding MGP_C3HHeJ_T0060152.1 MGP_C3HHeJ_G0026872.1 mouse_genomes_project 3 34001363 34037006 - Qrfpr protein_coding retained_intron MGP_C3HHeJ_T0014173.1 MGP_C3HHeJ_G0012277.1 mouse_genomes_project 3 138279156 138279315 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100521.1 MGP_C3HHeJ_G0038715.1 mouse_genomes_project 3 8310246 8310364 - Gm22795 snoRNA snoRNA MGP_C3HHeJ_T0061086.1 MGP_C3HHeJ_G0027074.1 mouse_genomes_project 3 86425502 86427838 - MGP_C3HHeJ_P0061086 protein_coding protein_coding MGP_C3HHeJ_T0061769.1 MGP_C3HHeJ_G0027197.1 mouse_genomes_project 3 90429233 90431925 - MGP_C3HHeJ_P0061769 Gm5849 protein_coding protein_coding MGP_C3HHeJ_T0060972.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81798584 81808298 - MGP_C3HHeJ_P0060972 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0060973.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81798587 81808266 - MGP_C3HHeJ_P0060973 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0060974.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81800150 81808174 - MGP_C3HHeJ_P0060974 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0060975.1 MGP_C3HHeJ_G0027045.1 mouse_genomes_project 3 81800150 81808174 - MGP_C3HHeJ_P0060975 Npy2r protein_coding protein_coding MGP_C3HHeJ_T0099285.1 MGP_C3HHeJ_G0037479.1 mouse_genomes_project 3 96575891 96576090 + Gm24830 snRNA snRNA MGP_C3HHeJ_T0060426.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51724159 51740264 - MGP_C3HHeJ_P0060426 Nhlrc3 protein_coding protein_coding MGP_C3HHeJ_T0060427.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51724164 51740255 - MGP_C3HHeJ_P0060427 Nhlrc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060428.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51735301 51738915 - Nhlrc3 protein_coding retained_intron MGP_C3HHeJ_T0060429.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51735806 51740183 - Nhlrc3 protein_coding retained_intron MGP_C3HHeJ_T0060430.1 MGP_C3HHeJ_G0026920.1 mouse_genomes_project 3 51738994 51740229 - Nhlrc3 protein_coding retained_intron MGP_C3HHeJ_T0010464.1 MGP_C3HHeJ_G0008597.1 mouse_genomes_project 3 124107685 124107742 - Mir7657 miRNA miRNA MGP_C3HHeJ_T0062259.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97104557 97137721 - MGP_C3HHeJ_P0062259 Cd160 protein_coding protein_coding MGP_C3HHeJ_T0062260.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97104557 97137721 - MGP_C3HHeJ_P0062260 Cd160 protein_coding protein_coding MGP_C3HHeJ_T0062261.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97105949 97121139 - MGP_C3HHeJ_P0062261 Cd160 protein_coding protein_coding MGP_C3HHeJ_T0062262.1 MGP_C3HHeJ_G0027337.1 mouse_genomes_project 3 97106397 97115487 - MGP_C3HHeJ_P0062262 Cd160 protein_coding unknown_likely_coding MGP_C3HHeJ_T0014117.1 MGP_C3HHeJ_G0012221.1 mouse_genomes_project 3 121451600 121452408 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001157.1 MGP_C3HHeJ_G0001091.1 mouse_genomes_project 3 49791255 49791797 + TEC TEC MGP_C3HHeJ_T0100560.1 MGP_C3HHeJ_G0038754.1 mouse_genomes_project 3 89717513 89717645 + Gm23723 snoRNA snoRNA MGP_C3HHeJ_T0007545.1 MGP_C3HHeJ_G0006166.1 mouse_genomes_project 3 96624258 96632709 + lincRNA lincRNA MGP_C3HHeJ_T0100571.1 MGP_C3HHeJ_G0038765.1 mouse_genomes_project 3 113325097 113325223 - Gm25519 snoRNA snoRNA MGP_C3HHeJ_T0013789.1 MGP_C3HHeJ_G0011893.1 mouse_genomes_project 3 14658860 14659365 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013852.1 MGP_C3HHeJ_G0011956.1 mouse_genomes_project 3 37023596 37023969 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014021.1 MGP_C3HHeJ_G0012125.1 mouse_genomes_project 3 93175113 93175935 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007499.1 MGP_C3HHeJ_G0006134.1 mouse_genomes_project 3 79265461 79426408 + A330069K06Rik lincRNA lincRNA MGP_C3HHeJ_T0063670.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140535773 140569922 + MGP_C3HHeJ_P0063670 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063671.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536019 140565633 + MGP_C3HHeJ_P0063671 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063672.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536851 140566448 + MGP_C3HHeJ_P0063672 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063673.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536851 140565792 + MGP_C3HHeJ_P0063673 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063674.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140536862 140565908 + MGP_C3HHeJ_P0063674 Eif4e protein_coding protein_coding MGP_C3HHeJ_T0063675.1 MGP_C3HHeJ_G0027632.1 mouse_genomes_project 3 140561090 140563959 + Eif4e protein_coding retained_intron MGP_C3HHeJ_T0007615.1 MGP_C3HHeJ_G0006223.1 mouse_genomes_project 3 132542380 132543351 + Gm42997 lincRNA lincRNA MGP_C3HHeJ_T0007616.1 MGP_C3HHeJ_G0006223.1 mouse_genomes_project 3 132542507 132587743 + Gm42997 lincRNA lincRNA MGP_C3HHeJ_T0014188.1 MGP_C3HHeJ_G0012292.1 mouse_genomes_project 3 142689984 142690237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007495.1 MGP_C3HHeJ_G0006132.1 mouse_genomes_project 3 78485693 78486694 + 6430573P05Rik lincRNA lincRNA MGP_C3HHeJ_T0007496.1 MGP_C3HHeJ_G0006132.1 mouse_genomes_project 3 78485912 78488365 + 6430573P05Rik lincRNA lincRNA MGP_C3HHeJ_T0007497.1 MGP_C3HHeJ_G0006132.1 mouse_genomes_project 3 78486248 78487325 + 6430573P05Rik lincRNA lincRNA MGP_C3HHeJ_T0098464.1 MGP_C3HHeJ_G0036669.1 mouse_genomes_project 3 146366388 146368479 - Gm43445 sense_intronic sense_intronic MGP_C3HHeJ_T0017745.1 MGP_C3HHeJ_G0015272.1 mouse_genomes_project 3 94418688 94423020 - Gm36070 processed_transcript lincRNA MGP_C3HHeJ_T0017746.1 MGP_C3HHeJ_G0015272.1 mouse_genomes_project 3 94419507 94421390 - Gm36070 processed_transcript retained_intron MGP_C3HHeJ_T0099302.1 MGP_C3HHeJ_G0037496.1 mouse_genomes_project 3 121805516 121805622 - Gm23733 snRNA snRNA MGP_C3HHeJ_T0060635.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966017 59099094 + MGP_C3HHeJ_P0060635 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060636.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966229 59107232 + MGP_C3HHeJ_P0060636 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060637.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966255 58968810 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060638.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966261 59125647 + MGP_C3HHeJ_P0060638 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060639.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58966264 59099079 + MGP_C3HHeJ_P0060639 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060640.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58988749 59050475 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060641.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989034 59101431 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060642.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989051 59131745 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060643.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989079 59050453 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060644.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989079 59023133 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060645.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 58989092 59133934 + MGP_C3HHeJ_P0060645 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060646.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59019624 59020606 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060647.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59019878 59133936 + MGP_C3HHeJ_P0060647 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060648.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59020545 59133387 + MGP_C3HHeJ_P0060648 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060649.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59020545 59133951 + MGP_C3HHeJ_P0060649 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060650.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59021085 59123239 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060651.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59021149 59129370 + Mbnl1 protein_coding processed_transcript MGP_C3HHeJ_T0060652.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59098970 59117598 + MGP_C3HHeJ_P0060652 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060653.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59099040 59131010 + MGP_C3HHeJ_P0060653 Mbnl1 protein_coding protein_coding MGP_C3HHeJ_T0060654.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59106875 59119969 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060655.1 MGP_C3HHeJ_G0026970.1 mouse_genomes_project 3 59127466 59130726 + Mbnl1 protein_coding retained_intron MGP_C3HHeJ_T0060422.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51317663 51534174 + MGP_C3HHeJ_P0060422 Lhfp protein_coding protein_coding MGP_C3HHeJ_T0060423.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51317694 51534170 + Lhfp protein_coding processed_transcript MGP_C3HHeJ_T0060424.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51317718 51534174 + MGP_C3HHeJ_P0060424 Lhfp protein_coding protein_coding MGP_C3HHeJ_T0060425.1 MGP_C3HHeJ_G0026919.1 mouse_genomes_project 3 51501223 51504329 + Lhfp protein_coding retained_intron MGP_C3HHeJ_T0061803.1 MGP_C3HHeJ_G0027228.1 mouse_genomes_project 3 92600973 92602419 - MGP_C3HHeJ_P0061803 Gm38119 protein_coding protein_coding MGP_C3HHeJ_T0001355.1 MGP_C3HHeJ_G0001286.1 mouse_genomes_project 3 157801386 157804174 + TEC TEC MGP_C3HHeJ_T0001251.1 MGP_C3HHeJ_G0001183.1 mouse_genomes_project 3 109548688 109550861 - TEC TEC MGP_C3HHeJ_T0004337.1 MGP_C3HHeJ_G0003778.1 mouse_genomes_project 3 160311867 160318443 - Gm43159 antisense antisense MGP_C3HHeJ_T0013963.1 MGP_C3HHeJ_G0012067.1 mouse_genomes_project 3 71156809 71157028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014066.1 MGP_C3HHeJ_G0012170.1 mouse_genomes_project 3 104492735 104493135 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013966.1 MGP_C3HHeJ_G0012070.1 mouse_genomes_project 3 73319188 73319525 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014090.1 MGP_C3HHeJ_G0012194.1 mouse_genomes_project 3 111620685 111621019 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007628.1 MGP_C3HHeJ_G0006234.1 mouse_genomes_project 3 135609119 135611841 - Gm6135 lincRNA lincRNA MGP_C3HHeJ_T0013792.1 MGP_C3HHeJ_G0011896.1 mouse_genomes_project 3 15807967 15808368 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007700.1 MGP_C3HHeJ_G0006291.1 mouse_genomes_project 3 158765002 158771136 - Gm42947 lincRNA lincRNA MGP_C3HHeJ_T0062747.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108578351 108579901 - Strip1 protein_coding retained_intron MGP_C3HHeJ_T0062748.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108578351 108597514 - MGP_C3HHeJ_P0062748 Strip1 protein_coding protein_coding MGP_C3HHeJ_T0062749.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108578354 108592664 - Strip1 protein_coding processed_transcript MGP_C3HHeJ_T0062750.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108582713 108585895 - Strip1 protein_coding processed_transcript MGP_C3HHeJ_T0062751.1 MGP_C3HHeJ_G0027454.1 mouse_genomes_project 3 108586271 108597514 - Strip1 protein_coding retained_intron MGP_C3HHeJ_T0007363.1 MGP_C3HHeJ_G0006034.1 mouse_genomes_project 3 5956688 5960019 - C230057A21Rik lincRNA lincRNA MGP_C3HHeJ_T0007364.1 MGP_C3HHeJ_G0006034.1 mouse_genomes_project 3 5956883 5960179 - C230057A21Rik lincRNA lincRNA MGP_C3HHeJ_T0007413.1 MGP_C3HHeJ_G0006070.1 mouse_genomes_project 3 32303057 32311002 - Gm42695 lincRNA lincRNA MGP_C3HHeJ_T0061862.1 MGP_C3HHeJ_G0027258.1 mouse_genomes_project 3 94548446 94559511 - MGP_C3HHeJ_P0061862 Riiad1 protein_coding protein_coding MGP_C3HHeJ_T0061863.1 MGP_C3HHeJ_G0027258.1 mouse_genomes_project 3 94548448 94567865 - Riiad1 protein_coding processed_transcript MGP_C3HHeJ_T0061864.1 MGP_C3HHeJ_G0027258.1 mouse_genomes_project 3 94552469 94558842 - Riiad1 protein_coding processed_transcript MGP_C3HHeJ_T0013769.1 MGP_C3HHeJ_G0011873.1 mouse_genomes_project 3 9019039 9020053 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010413.1 MGP_C3HHeJ_G0008546.1 mouse_genomes_project 3 15071112 15071221 + Mir124a-2 miRNA miRNA MGP_C3HHeJ_T0060656.1 MGP_C3HHeJ_G0026971.1 mouse_genomes_project 3 59548474 59554660 + MGP_C3HHeJ_P0060656 P2ry1 protein_coding protein_coding MGP_C3HHeJ_T0060657.1 MGP_C3HHeJ_G0026971.1 mouse_genomes_project 3 59548474 59554657 + MGP_C3HHeJ_P0060657 P2ry1 protein_coding protein_coding MGP_C3HHeJ_T0060658.1 MGP_C3HHeJ_G0026971.1 mouse_genomes_project 3 59548478 59550679 + MGP_C3HHeJ_P0060658 P2ry1 protein_coding protein_coding MGP_C3HHeJ_T0001312.1 MGP_C3HHeJ_G0001243.1 mouse_genomes_project 3 132365129 132368295 + TEC TEC MGP_C3HHeJ_T0062943.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110845558 111209007 - MGP_C3HHeJ_P0062943 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062944.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110845564 111210014 - MGP_C3HHeJ_P0062944 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062945.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110846633 111209478 - MGP_C3HHeJ_P0062945 Ntng1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062946.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062946 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062947.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062947 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062948.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111209698 - MGP_C3HHeJ_P0062948 Ntng1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062949.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062949 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062950.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062950 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062951.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062951 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062952.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110848200 111201538 - MGP_C3HHeJ_P0062952 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0062953.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110899263 110901575 - Ntng1 protein_coding retained_intron MGP_C3HHeJ_T0062954.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 110899263 111201498 - Ntng1 protein_coding retained_intron MGP_C3HHeJ_T0062955.1 MGP_C3HHeJ_G0027497.1 mouse_genomes_project 3 111209687 111210014 - MGP_C3HHeJ_P0062955 Ntng1 protein_coding protein_coding MGP_C3HHeJ_T0007533.1 MGP_C3HHeJ_G0006155.1 mouse_genomes_project 3 91931607 91933888 + Gm43736 lincRNA lincRNA MGP_C3HHeJ_T0063242.1 MGP_C3HHeJ_G0027554.1 mouse_genomes_project 3 125958005 125984321 - MGP_C3HHeJ_P0063242 1700006A11Rik protein_coding protein_coding MGP_C3HHeJ_T0063243.1 MGP_C3HHeJ_G0027554.1 mouse_genomes_project 3 125958240 125984272 - MGP_C3HHeJ_P0063243 1700006A11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063702.1 MGP_C3HHeJ_G0027638.1 mouse_genomes_project 3 143912142 143956397 - MGP_C3HHeJ_P0063702 Bmpr1b protein_coding protein_coding MGP_C3HHeJ_T0063703.1 MGP_C3HHeJ_G0027638.1 mouse_genomes_project 3 143915320 144010146 - MGP_C3HHeJ_P0063703 Bmpr1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059664.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5726091 5778663 + MGP_C3HHeJ_P0059664 Stmn2 protein_coding protein_coding MGP_C3HHeJ_T0059665.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5726246 5765880 + Stmn2 protein_coding retained_intron MGP_C3HHeJ_T0059666.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5726317 5755070 + Stmn2 protein_coding retained_intron MGP_C3HHeJ_T0059667.1 MGP_C3HHeJ_G0026765.1 mouse_genomes_project 3 5777321 5778632 + Stmn2 protein_coding processed_transcript MGP_C3HHeJ_T0007455.1 MGP_C3HHeJ_G0006100.1 mouse_genomes_project 3 50358811 50453673 - Gm37202 lincRNA lincRNA MGP_C3HHeJ_T0014011.1 MGP_C3HHeJ_G0012115.1 mouse_genomes_project 3 90683987 90684290 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062280.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97493736 97511534 + MGP_C3HHeJ_P0062280 Acp6 protein_coding protein_coding MGP_C3HHeJ_T0062281.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97494055 97495355 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062282.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97494062 97503270 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062283.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97494062 97502009 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062284.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97502336 97503412 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062285.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97503053 97508829 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062286.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97506109 97508858 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062287.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97507601 97511478 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0062288.1 MGP_C3HHeJ_G0027342.1 mouse_genomes_project 3 97508968 97512259 + Acp6 protein_coding retained_intron MGP_C3HHeJ_T0001314.1 MGP_C3HHeJ_G0001245.1 mouse_genomes_project 3 132514627 132516978 - TEC TEC MGP_C3HHeJ_T0013770.1 MGP_C3HHeJ_G0011874.1 mouse_genomes_project 3 9729754 9730121 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101959.1 MGP_C3HHeJ_G0039924.1 mouse_genomes_project 3 89717745 89718496 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0061812.1 MGP_C3HHeJ_G0027237.1 mouse_genomes_project 3 92816265 92817513 + MGP_C3HHeJ_P0061812 protein_coding protein_coding MGP_C3HHeJ_T0004205.1 MGP_C3HHeJ_G0003692.1 mouse_genomes_project 3 88880639 88891579 + 4731419I09Rik antisense antisense MGP_C3HHeJ_T0061346.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269228 88278558 + MGP_C3HHeJ_P0061346 Rit1 protein_coding protein_coding MGP_C3HHeJ_T0061347.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269233 88271092 + Rit1 protein_coding retained_intron MGP_C3HHeJ_T0061348.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269246 88283891 + MGP_C3HHeJ_P0061348 Rit1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061349.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269250 88283899 + Rit1 protein_coding retained_intron MGP_C3HHeJ_T0061350.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269251 88282397 + MGP_C3HHeJ_P0061350 Rit1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0061351.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269256 88283905 + MGP_C3HHeJ_P0061351 Rit1 protein_coding protein_coding MGP_C3HHeJ_T0061352.1 MGP_C3HHeJ_G0027122.1 mouse_genomes_project 3 88269263 88278508 + Rit1 protein_coding retained_intron MGP_C3HHeJ_T0007654.1 MGP_C3HHeJ_G0006256.1 mouse_genomes_project 3 145463545 145465511 + Gm43613 lincRNA lincRNA MGP_C3HHeJ_T0063186.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124104780 124129911 - MGP_C3HHeJ_P0063186 Fnbp1l protein_coding protein_coding MGP_C3HHeJ_T0063187.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124104786 124185898 - MGP_C3HHeJ_P0063187 Fnbp1l protein_coding protein_coding MGP_C3HHeJ_T0063188.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124108165 124185736 - MGP_C3HHeJ_P0063188 Fnbp1l protein_coding protein_coding MGP_C3HHeJ_T0063189.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124114097 124121140 - Fnbp1l protein_coding retained_intron MGP_C3HHeJ_T0063190.1 MGP_C3HHeJ_G0027541.1 mouse_genomes_project 3 124123946 124125282 - Fnbp1l protein_coding retained_intron MGP_C3HHeJ_T0098249.1 MGP_C3HHeJ_G0036461.1 mouse_genomes_project 3 13383841 13384170 - Gm25863 ribozyme ribozyme MGP_C3HHeJ_T0060872.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75000140 75085492 - MGP_C3HHeJ_P0060872 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060873.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75001239 75085512 - MGP_C3HHeJ_P0060873 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060874.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75001535 75004058 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060875.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75002715 75085500 - MGP_C3HHeJ_P0060875 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060876.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75011844 75018060 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060877.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75020239 75027827 - MGP_C3HHeJ_P0060877 Golim4 protein_coding protein_coding MGP_C3HHeJ_T0060878.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75024607 75085471 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060879.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75037138 75085213 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0060880.1 MGP_C3HHeJ_G0027025.1 mouse_genomes_project 3 75083678 75085494 - Golim4 protein_coding retained_intron MGP_C3HHeJ_T0061575.1 MGP_C3HHeJ_G0027163.1 mouse_genomes_project 3 89429873 89484645 - MGP_C3HHeJ_P0061575 Il6ra protein_coding protein_coding MGP_C3HHeJ_T0061576.1 MGP_C3HHeJ_G0027163.1 mouse_genomes_project 3 89435287 89484611 - MGP_C3HHeJ_P0061576 Il6ra protein_coding protein_coding MGP_C3HHeJ_T0014106.1 MGP_C3HHeJ_G0012210.1 mouse_genomes_project 3 116766867 116768078 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063828.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269091 148275908 + MGP_C3HHeJ_P0063828 2410004B18Rik protein_coding protein_coding MGP_C3HHeJ_T0063829.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269119 148275906 + MGP_C3HHeJ_P0063829 2410004B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063830.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269267 148274889 + MGP_C3HHeJ_P0063830 2410004B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063831.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269313 148269865 + 2410004B18Rik protein_coding retained_intron MGP_C3HHeJ_T0063832.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269362 148275321 + MGP_C3HHeJ_P0063832 2410004B18Rik protein_coding protein_coding MGP_C3HHeJ_T0063833.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148269721 148274932 + 2410004B18Rik protein_coding retained_intron MGP_C3HHeJ_T0063834.1 MGP_C3HHeJ_G0027665.1 mouse_genomes_project 3 148270163 148275277 + MGP_C3HHeJ_P0063834 2410004B18Rik protein_coding protein_coding MGP_C3HHeJ_T0014091.1 MGP_C3HHeJ_G0012195.1 mouse_genomes_project 3 112184452 112184769 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061794.1 MGP_C3HHeJ_G0027220.1 mouse_genomes_project 3 92478051 92479631 - MGP_C3HHeJ_P0061794 Lce6a protein_coding protein_coding MGP_C3HHeJ_T0061795.1 MGP_C3HHeJ_G0027220.1 mouse_genomes_project 3 92478055 92479151 - MGP_C3HHeJ_P0061795 Lce6a protein_coding protein_coding MGP_C3HHeJ_T0063622.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139923971 139976572 - MGP_C3HHeJ_P0063622 Dapp1 protein_coding protein_coding MGP_C3HHeJ_T0063623.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139925488 139949954 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063624.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139925791 139948798 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063625.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139925902 139976644 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063626.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139943811 139948798 - Dapp1 protein_coding processed_transcript MGP_C3HHeJ_T0063627.1 MGP_C3HHeJ_G0027620.1 mouse_genomes_project 3 139975818 139976650 - Dapp1 protein_coding retained_intron MGP_C3HHeJ_T0001093.1 MGP_C3HHeJ_G0001027.1 mouse_genomes_project 3 26785989 26787345 + TEC TEC MGP_C3HHeJ_T0060560.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121311 56228531 + MGP_C3HHeJ_P0060560 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060561.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121312 56166790 + MGP_C3HHeJ_P0060561 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060562.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121324 56203378 + Rnf13 protein_coding processed_transcript MGP_C3HHeJ_T0060563.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121331 56227188 + Rnf13 protein_coding processed_transcript MGP_C3HHeJ_T0060564.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121331 56228533 + MGP_C3HHeJ_P0060564 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060565.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121334 56219596 + MGP_C3HHeJ_P0060565 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060566.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121362 56228419 + MGP_C3HHeJ_P0060566 Rnf13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060567.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121369 56155720 + MGP_C3HHeJ_P0060567 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060568.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121369 56193860 + MGP_C3HHeJ_P0060568 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060569.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56121369 56226532 + MGP_C3HHeJ_P0060569 Rnf13 protein_coding protein_coding MGP_C3HHeJ_T0060570.1 MGP_C3HHeJ_G0026948.1 mouse_genomes_project 3 56192153 56196026 + Rnf13 protein_coding retained_intron MGP_C3HHeJ_T0059654.1 MGP_C3HHeJ_G0026762.1 mouse_genomes_project 3 4564715 4638097 + MGP_C3HHeJ_P0059654 Pkia protein_coding protein_coding MGP_C3HHeJ_T0059655.1 MGP_C3HHeJ_G0026762.1 mouse_genomes_project 3 4564716 4648430 + MGP_C3HHeJ_P0059655 Pkia protein_coding protein_coding MGP_C3HHeJ_T0059656.1 MGP_C3HHeJ_G0026762.1 mouse_genomes_project 3 4629659 4645476 + MGP_C3HHeJ_P0059656 Pkia protein_coding protein_coding MGP_C3HHeJ_T0062873.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590385 109601212 + Taf13 protein_coding processed_transcript MGP_C3HHeJ_T0062874.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590386 109601912 + Taf13 protein_coding processed_transcript MGP_C3HHeJ_T0062875.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590398 109592043 + Taf13 protein_coding retained_intron MGP_C3HHeJ_T0062876.1 MGP_C3HHeJ_G0027483.1 mouse_genomes_project 3 109590409 109600338 + MGP_C3HHeJ_P0062876 Taf13 protein_coding protein_coding MGP_C3HHeJ_T0010479.1 MGP_C3HHeJ_G0008612.1 mouse_genomes_project 3 148751188 148751262 - Gm22901 miRNA miRNA MGP_C3HHeJ_T0060602.1 MGP_C3HHeJ_G0026958.1 mouse_genomes_project 3 57547044 57552424 - MGP_C3HHeJ_P0060602 Gpr171 protein_coding protein_coding MGP_C3HHeJ_T0014024.1 MGP_C3HHeJ_G0012128.1 mouse_genomes_project 3 93325599 93326151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014049.1 MGP_C3HHeJ_G0012153.1 mouse_genomes_project 3 100109732 100110387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014217.1 MGP_C3HHeJ_G0012321.1 mouse_genomes_project 3 158786318 158788601 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013905.1 MGP_C3HHeJ_G0012009.1 mouse_genomes_project 3 56152465 56153257 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098286.1 MGP_C3HHeJ_G0036498.1 mouse_genomes_project 3 61713536 61713678 + Gm22433 scaRNA scaRNA MGP_C3HHeJ_T0014104.1 MGP_C3HHeJ_G0012208.1 mouse_genomes_project 3 116066707 116067375 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062312.1 MGP_C3HHeJ_G0027348.1 mouse_genomes_project 3 98026155 98027819 - MGP_C3HHeJ_P0062312 Gm17651 protein_coding protein_coding MGP_C3HHeJ_T0004171.1 MGP_C3HHeJ_G0003667.1 mouse_genomes_project 3 53723928 53749581 - Gm42609 antisense antisense MGP_C3HHeJ_T0004172.1 MGP_C3HHeJ_G0003667.1 mouse_genomes_project 3 53726738 53747483 - Gm42609 antisense antisense MGP_C3HHeJ_T0098118.1 MGP_C3HHeJ_G0036330.1 mouse_genomes_project 3 7141943 7142052 - Gm24786 rRNA rRNA MGP_C3HHeJ_T0001278.1 MGP_C3HHeJ_G0001210.1 mouse_genomes_project 3 124800290 124802850 - TEC TEC MGP_C3HHeJ_T0099292.1 MGP_C3HHeJ_G0037486.1 mouse_genomes_project 3 97481216 97481326 - Gm24435 snRNA snRNA MGP_C3HHeJ_T0060914.1 MGP_C3HHeJ_G0027032.1 mouse_genomes_project 3 78842144 78845867 + MGP_C3HHeJ_P0060914 4930579G24Rik protein_coding protein_coding MGP_C3HHeJ_T0004225.1 MGP_C3HHeJ_G0003705.1 mouse_genomes_project 3 96108315 96125523 + C920021L13Rik antisense antisense MGP_C3HHeJ_T0004226.1 MGP_C3HHeJ_G0003705.1 mouse_genomes_project 3 96108318 96126660 + C920021L13Rik antisense antisense MGP_C3HHeJ_T0004227.1 MGP_C3HHeJ_G0003705.1 mouse_genomes_project 3 96108324 96111684 + C920021L13Rik antisense antisense MGP_C3HHeJ_T0063784.1 MGP_C3HHeJ_G0027654.1 mouse_genomes_project 3 147076318 147107223 - MGP_C3HHeJ_P0063784 Clca3b protein_coding protein_coding MGP_C3HHeJ_T0001191.1 MGP_C3HHeJ_G0001123.1 mouse_genomes_project 3 56071560 56072857 - TEC TEC MGP_C3HHeJ_T0010438.1 MGP_C3HHeJ_G0008571.1 mouse_genomes_project 3 87746844 87746931 + Mir3093 miRNA miRNA MGP_C3HHeJ_T0062722.1 MGP_C3HHeJ_G0027444.1 mouse_genomes_project 3 108159822 108170249 - MGP_C3HHeJ_P0062722 Cym protein_coding protein_coding MGP_C3HHeJ_T0061475.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88783568 88784796 + Krtcap2 protein_coding retained_intron MGP_C3HHeJ_T0061476.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88783568 88787509 + MGP_C3HHeJ_P0061476 Krtcap2 protein_coding protein_coding MGP_C3HHeJ_T0061477.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88784036 88787312 + MGP_C3HHeJ_P0061477 Krtcap2 protein_coding protein_coding MGP_C3HHeJ_T0061478.1 MGP_C3HHeJ_G0027141.1 mouse_genomes_project 3 88786465 88787325 + Krtcap2 protein_coding retained_intron MGP_C3HHeJ_T0060842.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71923197 72001264 - MGP_C3HHeJ_P0060842 Sis protein_coding protein_coding MGP_C3HHeJ_T0060843.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71923200 72000345 - MGP_C3HHeJ_P0060843 Sis protein_coding protein_coding MGP_C3HHeJ_T0060844.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71983563 71984695 - Sis protein_coding retained_intron MGP_C3HHeJ_T0060845.1 MGP_C3HHeJ_G0027017.1 mouse_genomes_project 3 71998492 72001261 - Sis protein_coding retained_intron MGP_C3HHeJ_T0062277.1 MGP_C3HHeJ_G0027341.1 mouse_genomes_project 3 97221045 97233826 - MGP_C3HHeJ_P0062277 Gja8 protein_coding protein_coding MGP_C3HHeJ_T0010424.1 MGP_C3HHeJ_G0008557.1 mouse_genomes_project 3 32691040 32691147 - Mir6378 miRNA miRNA MGP_C3HHeJ_T0062438.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103174621 103228350 + MGP_C3HHeJ_P0062438 Ngf protein_coding protein_coding MGP_C3HHeJ_T0062439.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103174630 103217343 + MGP_C3HHeJ_P0062439 Ngf protein_coding protein_coding MGP_C3HHeJ_T0062440.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103174630 103228515 + MGP_C3HHeJ_P0062440 Ngf protein_coding protein_coding MGP_C3HHeJ_T0062441.1 MGP_C3HHeJ_G0027383.1 mouse_genomes_project 3 103193338 103228497 + MGP_C3HHeJ_P0062441 Ngf protein_coding protein_coding MGP_C3HHeJ_T0060008.1 MGP_C3HHeJ_G0026848.1 mouse_genomes_project 3 29255732 29338040 - MGP_C3HHeJ_P0060008 protein_coding protein_coding MGP_C3HHeJ_T0100518.1 MGP_C3HHeJ_G0038712.1 mouse_genomes_project 3 4164123 4164236 + Gm22074 snoRNA snoRNA MGP_C3HHeJ_T0001144.1 MGP_C3HHeJ_G0001078.1 mouse_genomes_project 3 48781930 48783262 - TEC TEC MGP_C3HHeJ_T0013836.1 MGP_C3HHeJ_G0011940.1 mouse_genomes_project 3 34238501 34239048 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061193.1 MGP_C3HHeJ_G0027098.1 mouse_genomes_project 3 87589162 87599150 - MGP_C3HHeJ_P0061193 Ttc24 protein_coding protein_coding MGP_C3HHeJ_T0061194.1 MGP_C3HHeJ_G0027098.1 mouse_genomes_project 3 87589565 87591825 - MGP_C3HHeJ_P0061194 Ttc24 protein_coding protein_coding MGP_C3HHeJ_T0001163.1 MGP_C3HHeJ_G0001096.1 mouse_genomes_project 3 50087046 50088258 - TEC TEC MGP_C3HHeJ_T0004197.1 MGP_C3HHeJ_G0003686.1 mouse_genomes_project 3 86188709 86199307 - Gm37876 antisense antisense MGP_C3HHeJ_T0009374.1 MGP_C3HHeJ_G0007507.1 mouse_genomes_project 3 147243341 147254114 + Gm43742 macro_lncRNA macro_lncRNA MGP_C3HHeJ_T0062871.1 MGP_C3HHeJ_G0027482.1 mouse_genomes_project 3 109574095 109579834 - MGP_C3HHeJ_P0062871 protein_coding protein_coding MGP_C3HHeJ_T0062872.1 MGP_C3HHeJ_G0027482.1 mouse_genomes_project 3 109574095 109580130 - MGP_C3HHeJ_P0062872 protein_coding protein_coding MGP_C3HHeJ_T0007434.1 MGP_C3HHeJ_G0006087.1 mouse_genomes_project 3 36508830 36510138 + Gm43538 lincRNA lincRNA MGP_C3HHeJ_T0063575.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137748539 137814160 + MGP_C3HHeJ_P0063575 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063576.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137748914 137784160 + Slc39a8 protein_coding retained_intron MGP_C3HHeJ_T0063577.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137748917 137814340 + MGP_C3HHeJ_P0063577 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063578.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137749026 137814338 + MGP_C3HHeJ_P0063578 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063579.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137750023 137814152 + MGP_C3HHeJ_P0063579 Slc39a8 protein_coding protein_coding MGP_C3HHeJ_T0063580.1 MGP_C3HHeJ_G0027610.1 mouse_genomes_project 3 137809919 137814334 + Slc39a8 protein_coding retained_intron MGP_C3HHeJ_T0062507.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104034798 104130002 + MGP_C3HHeJ_P0062507 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062508.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104081156 104098844 + MGP_C3HHeJ_P0062508 protein_coding protein_coding MGP_C3HHeJ_T0062509.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104091154 104096117 + protein_coding retained_intron MGP_C3HHeJ_T0062510.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104095773 104097126 + protein_coding retained_intron MGP_C3HHeJ_T0062511.1 MGP_C3HHeJ_G0027394.1 mouse_genomes_project 3 104095865 104125579 + MGP_C3HHeJ_P0062511 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010470.1 MGP_C3HHeJ_G0008603.1 mouse_genomes_project 3 131454141 131454300 - Gm24515 miRNA miRNA MGP_C3HHeJ_T0060399.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49721864 49769215 - MGP_C3HHeJ_P0060399 Setd7 protein_coding protein_coding MGP_C3HHeJ_T0060400.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49737403 49744620 - Setd7 protein_coding retained_intron MGP_C3HHeJ_T0060401.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49743473 49745101 - Setd7 protein_coding retained_intron MGP_C3HHeJ_T0060402.1 MGP_C3HHeJ_G0026914.1 mouse_genomes_project 3 49757052 49759690 - Setd7 protein_coding retained_intron MGP_C3HHeJ_T0014155.1 MGP_C3HHeJ_G0012259.1 mouse_genomes_project 3 134830019 134830448 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013832.1 MGP_C3HHeJ_G0011936.1 mouse_genomes_project 3 33668290 33669279 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099312.1 MGP_C3HHeJ_G0037506.1 mouse_genomes_project 3 139906198 139906297 - Gm25920 snRNA snRNA MGP_C3HHeJ_T0010471.1 MGP_C3HHeJ_G0008604.1 mouse_genomes_project 3 135980630 135980721 - Gm44361 miRNA miRNA MGP_C3HHeJ_T0101945.1 MGP_C3HHeJ_G0039910.1 mouse_genomes_project 3 58058070 58083878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007583.1 MGP_C3HHeJ_G0006199.1 mouse_genomes_project 3 116973403 116974982 + Gm9889 lincRNA lincRNA MGP_C3HHeJ_T0007584.1 MGP_C3HHeJ_G0006199.1 mouse_genomes_project 3 116973403 116974981 + Gm9889 lincRNA pseudogene MGP_C3HHeJ_T0098405.1 MGP_C3HHeJ_G0036611.1 mouse_genomes_project 3 78760446 78762372 - sense_intronic sense_intronic MGP_C3HHeJ_T0013826.1 MGP_C3HHeJ_G0011930.1 mouse_genomes_project 3 31397015 31397373 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014182.1 MGP_C3HHeJ_G0012286.1 mouse_genomes_project 3 140659477 140659666 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060533.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 53965443 54532038 - MGP_C3HHeJ_P0060533 Nbea protein_coding protein_coding MGP_C3HHeJ_T0060534.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 53965447 54035047 - Nbea protein_coding processed_transcript MGP_C3HHeJ_T0060535.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 53966768 54133437 - Nbea protein_coding processed_transcript MGP_C3HHeJ_T0060536.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54040466 54069455 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060537.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54125256 54134480 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060538.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54126165 54130025 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060540.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54307977 54315303 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060541.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54348161 54350586 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060542.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54364281 54367356 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0060543.1 MGP_C3HHeJ_G0026941.1 mouse_genomes_project 3 54374122 54382513 - Nbea protein_coding retained_intron MGP_C3HHeJ_T0014112.1 MGP_C3HHeJ_G0012216.1 mouse_genomes_project 3 118446794 118447475 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0063398.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131697841 131757422 - MGP_C3HHeJ_P0063398 Ccdc109b protein_coding protein_coding MGP_C3HHeJ_T0063399.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131697856 131757264 - MGP_C3HHeJ_P0063399 Ccdc109b protein_coding protein_coding MGP_C3HHeJ_T0063400.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131699961 131757205 - MGP_C3HHeJ_P0063400 Ccdc109b protein_coding protein_coding MGP_C3HHeJ_T0063401.1 MGP_C3HHeJ_G0027578.1 mouse_genomes_project 3 131709313 131757340 - MGP_C3HHeJ_P0063401 Ccdc109b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062153.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168519 96187273 + MGP_C3HHeJ_P0062153 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062154.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168524 96187343 + MGP_C3HHeJ_P0062154 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062155.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168566 96187150 + MGP_C3HHeJ_P0062155 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062156.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168627 96188977 + MGP_C3HHeJ_P0062156 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062157.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168782 96187255 + MGP_C3HHeJ_P0062157 Anp32e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062158.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168823 96187026 + MGP_C3HHeJ_P0062158 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062159.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96168838 96189099 + MGP_C3HHeJ_P0062159 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062160.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96169777 96178351 + MGP_C3HHeJ_P0062160 Anp32e protein_coding protein_coding MGP_C3HHeJ_T0062161.1 MGP_C3HHeJ_G0027305.1 mouse_genomes_project 3 96185911 96187231 + Anp32e protein_coding retained_intron MGP_C3HHeJ_T0062526.1 MGP_C3HHeJ_G0027398.1 mouse_genomes_project 3 104534484 104541503 + MGP_C3HHeJ_P0062526 protein_coding protein_coding MGP_C3HHeJ_T0007467.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55981591 55996417 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0007468.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55991564 55996478 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0007469.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55991918 55996448 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0007470.1 MGP_C3HHeJ_G0006111.1 mouse_genomes_project 3 55993483 55996484 - Gm26671 lincRNA lincRNA MGP_C3HHeJ_T0001267.1 MGP_C3HHeJ_G0001199.1 mouse_genomes_project 3 122935780 122939145 - TEC TEC MGP_C3HHeJ_T0007398.1 MGP_C3HHeJ_G0006056.1 mouse_genomes_project 3 20421653 20424628 + Gm37021 lincRNA lincRNA MGP_C3HHeJ_T0010475.1 MGP_C3HHeJ_G0008608.1 mouse_genomes_project 3 139755478 139755559 - Mir6380 miRNA miRNA MGP_C3HHeJ_T0001357.1 MGP_C3HHeJ_G0001288.1 mouse_genomes_project 3 159467398 159468730 + TEC TEC MGP_C3HHeJ_T0061201.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670679 87701917 + MGP_C3HHeJ_P0061201 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061202.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670723 87699762 + MGP_C3HHeJ_P0061202 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061203.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670879 87698487 + MGP_C3HHeJ_P0061203 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061204.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670879 87698487 + MGP_C3HHeJ_P0061204 Mef2d protein_coding protein_coding MGP_C3HHeJ_T0061205.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87670881 87684548 + Mef2d protein_coding retained_intron MGP_C3HHeJ_T0061206.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87691504 87698617 + Mef2d protein_coding processed_transcript MGP_C3HHeJ_T0061207.1 MGP_C3HHeJ_G0027100.1 mouse_genomes_project 3 87698083 87698738 + Mef2d protein_coding processed_transcript MGP_C3HHeJ_T0001232.1 MGP_C3HHeJ_G0001164.1 mouse_genomes_project 3 96181275 96183755 + TEC TEC MGP_C3HHeJ_T0063361.1 MGP_C3HHeJ_G0027570.1 mouse_genomes_project 3 131302127 131407760 + MGP_C3HHeJ_P0063361 Elovl6 protein_coding protein_coding MGP_C3HHeJ_T0063362.1 MGP_C3HHeJ_G0027570.1 mouse_genomes_project 3 131321872 131397613 + MGP_C3HHeJ_P0063362 Elovl6 protein_coding protein_coding MGP_C3HHeJ_T0060852.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74148308 74256934 - MGP_C3HHeJ_P0060852 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060853.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74148319 74256892 - MGP_C3HHeJ_P0060853 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060854.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74170919 74256865 - MGP_C3HHeJ_P0060854 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060855.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74188250 74256934 - MGP_C3HHeJ_P0060855 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0060856.1 MGP_C3HHeJ_G0027020.1 mouse_genomes_project 3 74222339 74280076 - MGP_C3HHeJ_P0060856 Zbbx protein_coding protein_coding MGP_C3HHeJ_T0007494.1 MGP_C3HHeJ_G0006131.1 mouse_genomes_project 3 75084663 75137971 + Gm37256 lincRNA lincRNA MGP_C3HHeJ_T0007419.1 MGP_C3HHeJ_G0006075.1 mouse_genomes_project 3 33391269 33440767 - Gm6639 lincRNA lincRNA MGP_C3HHeJ_T0001240.1 MGP_C3HHeJ_G0001172.1 mouse_genomes_project 3 97959351 97963254 + TEC TEC MGP_C3HHeJ_T0004170.1 MGP_C3HHeJ_G0003666.1 mouse_genomes_project 3 53397189 53428502 + 4931419H13Rik antisense antisense MGP_C3HHeJ_T0001113.1 MGP_C3HHeJ_G0001047.1 mouse_genomes_project 3 33646324 33646883 + TEC TEC MGP_C3HHeJ_T0001221.1 MGP_C3HHeJ_G0001153.1 mouse_genomes_project 3 84570198 84571454 - TEC TEC MGP_C3HHeJ_T0098288.1 MGP_C3HHeJ_G0036500.1 mouse_genomes_project 3 88245280 88245408 + Gm25820 scaRNA scaRNA MGP_C3HHeJ_T0013924.1 MGP_C3HHeJ_G0012028.1 mouse_genomes_project 3 61312158 61312740 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060556.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56033198 56068179 - MGP_C3HHeJ_P0060556 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0060557.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56033242 56067726 - MGP_C3HHeJ_P0060557 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060558.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56040107 56067915 - MGP_C3HHeJ_P0060558 protein_coding protein_coding MGP_C3HHeJ_T0060559.1 MGP_C3HHeJ_G0026947.1 mouse_genomes_project 3 56041947 56067917 - MGP_C3HHeJ_P0060559 protein_coding protein_coding MGP_C3HHeJ_T0061093.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822634 86838218 + MGP_C3HHeJ_P0061093 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061094.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822636 86838611 + MGP_C3HHeJ_P0061094 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061095.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822695 86838612 + MGP_C3HHeJ_P0061095 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061096.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822707 86854024 + MGP_C3HHeJ_P0061096 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061097.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822714 86838232 + MGP_C3HHeJ_P0061097 Fcrl1 protein_coding protein_coding MGP_C3HHeJ_T0061098.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86822742 86837769 + MGP_C3HHeJ_P0061098 Fcrl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0061099.1 MGP_C3HHeJ_G0027078.1 mouse_genomes_project 3 86832105 86838576 + Fcrl1 protein_coding retained_intron MGP_C3HHeJ_T0098430.1 MGP_C3HHeJ_G0036635.1 mouse_genomes_project 3 103843420 103844540 + Gm43063 sense_intronic sense_intronic MGP_C3HHeJ_T0014058.1 MGP_C3HHeJ_G0012162.1 mouse_genomes_project 3 102768485 102768763 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001248.1 MGP_C3HHeJ_G0001180.1 mouse_genomes_project 3 108846248 108846934 + TEC TEC MGP_C3HHeJ_T0060579.1 MGP_C3HHeJ_G0026951.1 mouse_genomes_project 3 56939773 56945855 - MGP_C3HHeJ_P0060579 Serp1 protein_coding protein_coding MGP_C3HHeJ_T0013834.1 MGP_C3HHeJ_G0011938.1 mouse_genomes_project 3 34027863 34028819 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007622.1 MGP_C3HHeJ_G0006228.1 mouse_genomes_project 3 132749185 132750538 - Gm43349 lincRNA lincRNA MGP_C3HHeJ_T0014034.1 MGP_C3HHeJ_G0012138.1 mouse_genomes_project 3 96131703 96135096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061804.1 MGP_C3HHeJ_G0027229.1 mouse_genomes_project 3 92626245 92628096 - MGP_C3HHeJ_P0061804 Lce1h protein_coding protein_coding MGP_C3HHeJ_T0062761.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108707974 108727394 - MGP_C3HHeJ_P0062761 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062762.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108707974 108727161 - MGP_C3HHeJ_P0062762 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062763.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108709940 108717906 - MGP_C3HHeJ_P0062763 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062764.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108712521 108727167 - MGP_C3HHeJ_P0062764 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062765.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108714659 108727167 - Csf1 protein_coding retained_intron MGP_C3HHeJ_T0062766.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108715468 108717668 - MGP_C3HHeJ_P0062766 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062767.1 MGP_C3HHeJ_G0027457.1 mouse_genomes_project 3 108717306 108727146 - MGP_C3HHeJ_P0062767 Csf1 protein_coding protein_coding MGP_C3HHeJ_T0062383.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101181666 101307764 - MGP_C3HHeJ_P0062383 Man1a2 protein_coding protein_coding MGP_C3HHeJ_T0062384.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101208638 101272758 - Man1a2 protein_coding processed_transcript MGP_C3HHeJ_T0062385.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101239481 101306873 - MGP_C3HHeJ_P0062385 Man1a2 protein_coding protein_coding MGP_C3HHeJ_T0062386.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101264730 101307386 - MGP_C3HHeJ_P0062386 Man1a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062387.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101276226 101307569 - Man1a2 protein_coding processed_transcript MGP_C3HHeJ_T0062388.1 MGP_C3HHeJ_G0027369.1 mouse_genomes_project 3 101306853 101307720 - Man1a2 protein_coding processed_transcript MGP_C3HHeJ_T0059917.1 MGP_C3HHeJ_G0026831.1 mouse_genomes_project 3 26323350 26340859 + MGP_C3HHeJ_P0059917 Eif5a2 protein_coding protein_coding MGP_C3HHeJ_T0001222.1 MGP_C3HHeJ_G0001154.1 mouse_genomes_project 3 85299517 85301057 + TEC TEC MGP_C3HHeJ_T0007420.1 MGP_C3HHeJ_G0006076.1 mouse_genomes_project 3 34085745 34088079 - Gm43204 lincRNA lincRNA MGP_C3HHeJ_T0017727.1 MGP_C3HHeJ_G0015264.1 mouse_genomes_project 3 43237907 43346508 - processed_transcript lincRNA MGP_C3HHeJ_T0017728.1 MGP_C3HHeJ_G0015264.1 mouse_genomes_project 3 43238820 43330858 - processed_transcript lincRNA MGP_C3HHeJ_T0017729.1 MGP_C3HHeJ_G0015264.1 mouse_genomes_project 3 43298793 43346453 - processed_transcript retained_intron MGP_C3HHeJ_T0014200.1 MGP_C3HHeJ_G0012304.1 mouse_genomes_project 3 147105648 147106285 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013753.1 MGP_C3HHeJ_G0011857.1 mouse_genomes_project 3 5535339 5541045 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014029.1 MGP_C3HHeJ_G0012133.1 mouse_genomes_project 3 95598314 95598714 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007362.1 MGP_C3HHeJ_G0006033.1 mouse_genomes_project 3 5845314 5850371 + Gm32496 lincRNA lincRNA MGP_C3HHeJ_T0099283.1 MGP_C3HHeJ_G0037477.1 mouse_genomes_project 3 95258779 95258886 + Gm22301 snRNA snRNA MGP_C3HHeJ_T0059715.1 MGP_C3HHeJ_G0026782.1 mouse_genomes_project 3 7710933 7740408 + MGP_C3HHeJ_P0059715 Chmp4c protein_coding protein_coding MGP_C3HHeJ_T0059716.1 MGP_C3HHeJ_G0026782.1 mouse_genomes_project 3 7710984 7774995 + MGP_C3HHeJ_P0059716 Chmp4c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062297.1 MGP_C3HHeJ_G0027344.1 mouse_genomes_project 3 97757871 97758834 - MGP_C3HHeJ_P0062297 Olfr1402 protein_coding protein_coding MGP_C3HHeJ_T0007677.1 MGP_C3HHeJ_G0006276.1 mouse_genomes_project 3 149808644 149813021 + Gm37041 lincRNA lincRNA MGP_C3HHeJ_T0062390.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101562426 101571956 + MGP_C3HHeJ_P0062390 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0062391.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101562699 101574265 + MGP_C3HHeJ_P0062391 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0062392.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101562717 101577173 + MGP_C3HHeJ_P0062392 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0062393.1 MGP_C3HHeJ_G0027371.1 mouse_genomes_project 3 101563144 101572311 + MGP_C3HHeJ_P0062393 Trim45 protein_coding protein_coding MGP_C3HHeJ_T0013768.1 MGP_C3HHeJ_G0011872.1 mouse_genomes_project 3 8377811 8378000 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007439.1 MGP_C3HHeJ_G0006091.1 mouse_genomes_project 3 39239848 39254918 + Gm30852 lincRNA lincRNA MGP_C3HHeJ_T0007440.1 MGP_C3HHeJ_G0006091.1 mouse_genomes_project 3 39253402 39280079 + Gm30852 lincRNA lincRNA MGP_C3HHeJ_T0007451.1 MGP_C3HHeJ_G0006097.1 mouse_genomes_project 3 47243589 47262415 + Gm31415 lincRNA lincRNA MGP_C3HHeJ_T0013808.1 MGP_C3HHeJ_G0011912.1 mouse_genomes_project 3 19716832 19718763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007501.1 MGP_C3HHeJ_G0006136.1 mouse_genomes_project 3 80202034 80212050 + Gm42468 lincRNA lincRNA MGP_C3HHeJ_T0099319.1 MGP_C3HHeJ_G0037513.1 mouse_genomes_project 3 158505562 158505666 - Gm23038 snRNA snRNA MGP_C3HHeJ_T0007459.1 MGP_C3HHeJ_G0006104.1 mouse_genomes_project 3 51005276 51053088 + Gm2447 lincRNA lincRNA MGP_C3HHeJ_T0007460.1 MGP_C3HHeJ_G0006104.1 mouse_genomes_project 3 51037584 51053086 + Gm2447 lincRNA lincRNA MGP_C3HHeJ_T0001195.1 MGP_C3HHeJ_G0001127.1 mouse_genomes_project 3 58112031 58114438 + TEC TEC MGP_C3HHeJ_T0063131.1 MGP_C3HHeJ_G0027532.1 mouse_genomes_project 3 122971856 122973240 - Slc44a3 protein_coding processed_transcript MGP_C3HHeJ_T0063132.1 MGP_C3HHeJ_G0027532.1 mouse_genomes_project 3 122971856 123045091 - MGP_C3HHeJ_P0063132 Slc44a3 protein_coding protein_coding MGP_C3HHeJ_T0063133.1 MGP_C3HHeJ_G0027532.1 mouse_genomes_project 3 123032458 123039800 - Slc44a3 protein_coding processed_transcript MGP_C3HHeJ_T0013872.1 MGP_C3HHeJ_G0011976.1 mouse_genomes_project 3 45152153 45153156 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060246.1 MGP_C3HHeJ_G0026888.1 mouse_genomes_project 3 35491888 35496580 + MGP_C3HHeJ_P0060246 Spry1 protein_coding protein_coding MGP_C3HHeJ_T0060247.1 MGP_C3HHeJ_G0026888.1 mouse_genomes_project 3 35491899 35496580 + MGP_C3HHeJ_P0060247 Spry1 protein_coding protein_coding MGP_C3HHeJ_T0060248.1 MGP_C3HHeJ_G0026888.1 mouse_genomes_project 3 35492021 35496580 + MGP_C3HHeJ_P0060248 Spry1 protein_coding protein_coding MGP_C3HHeJ_T0001090.1 MGP_C3HHeJ_G0001024.1 mouse_genomes_project 3 25036859 25038083 + TEC TEC MGP_C3HHeJ_T0001353.1 MGP_C3HHeJ_G0001284.1 mouse_genomes_project 3 156925351 156927347 - TEC TEC MGP_C3HHeJ_T0098427.1 MGP_C3HHeJ_G0036632.1 mouse_genomes_project 3 102829948 102831236 + Gm43244 sense_intronic sense_intronic MGP_C3HHeJ_T0013812.1 MGP_C3HHeJ_G0011916.1 mouse_genomes_project 3 22589579 22589759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014159.1 MGP_C3HHeJ_G0012263.1 mouse_genomes_project 3 136208642 136209141 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007538.1 MGP_C3HHeJ_G0006160.1 mouse_genomes_project 3 94747316 94845577 + lincRNA lincRNA MGP_C3HHeJ_T0014191.1 MGP_C3HHeJ_G0012295.1 mouse_genomes_project 3 144265828 144266168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007555.1 MGP_C3HHeJ_G0006176.1 mouse_genomes_project 3 101315250 101322918 + Gm43464 lincRNA lincRNA MGP_C3HHeJ_T0100540.1 MGP_C3HHeJ_G0038734.1 mouse_genomes_project 3 55425694 55425824 + Gm22269 snoRNA snoRNA MGP_C3HHeJ_T0013902.1 MGP_C3HHeJ_G0012006.1 mouse_genomes_project 3 55725354 55726401 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014041.1 MGP_C3HHeJ_G0012145.1 mouse_genomes_project 3 98555498 98557688 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010437.1 MGP_C3HHeJ_G0008570.1 mouse_genomes_project 3 84854415 84854535 + Mir466k miRNA miRNA MGP_C3HHeJ_T0001345.1 MGP_C3HHeJ_G0001276.1 mouse_genomes_project 3 154969042 154971354 - TEC TEC MGP_C3HHeJ_T0004180.1 MGP_C3HHeJ_G0003674.1 mouse_genomes_project 3 62581770 62587789 + Gm26850 antisense antisense MGP_C3HHeJ_T0004181.1 MGP_C3HHeJ_G0003674.1 mouse_genomes_project 3 62581772 62583588 + Gm26850 antisense antisense MGP_C3HHeJ_T0059724.1 MGP_C3HHeJ_G0026785.1 mouse_genomes_project 3 11904840 11931914 + MGP_C3HHeJ_P0059724 Slc7a12 protein_coding protein_coding MGP_C3HHeJ_T0059725.1 MGP_C3HHeJ_G0026785.1 mouse_genomes_project 3 11904843 11931808 + MGP_C3HHeJ_P0059725 Slc7a12 protein_coding protein_coding MGP_C3HHeJ_T0059726.1 MGP_C3HHeJ_G0026785.1 mouse_genomes_project 3 11904916 11931808 + MGP_C3HHeJ_P0059726 Slc7a12 protein_coding protein_coding MGP_C3HHeJ_T0062752.1 MGP_C3HHeJ_G0027455.1 mouse_genomes_project 3 108597141 108598860 + MGP_C3HHeJ_P0062752 Gm10961 protein_coding protein_coding MGP_C3HHeJ_T0061285.1 MGP_C3HHeJ_G0027114.1 mouse_genomes_project 3 88079126 88088161 + MGP_C3HHeJ_P0061285 Mex3a protein_coding protein_coding MGP_C3HHeJ_T0059895.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784557 26208740 + MGP_C3HHeJ_P0059895 Tnik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059896.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784558 26214014 + MGP_C3HHeJ_P0059896 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059897.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784619 25884047 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059898.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784619 26027654 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059899.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784906 26204605 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059900.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784906 26206378 + MGP_C3HHeJ_P0059900 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059901.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784906 26206378 + MGP_C3HHeJ_P0059901 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059902.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784925 25786220 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059903.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059903 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059904.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059904 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059905.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059905 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059906.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059906 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059907.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25784986 26206137 + MGP_C3HHeJ_P0059907 Tnik protein_coding protein_coding MGP_C3HHeJ_T0059908.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 25937982 26120017 + Tnik protein_coding processed_transcript MGP_C3HHeJ_T0059909.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26062641 26064456 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059910.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26153001 26161567 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059911.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26181622 26204101 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0059912.1 MGP_C3HHeJ_G0026828.1 mouse_genomes_project 3 26205000 26206904 + Tnik protein_coding retained_intron MGP_C3HHeJ_T0062589.1 MGP_C3HHeJ_G0027410.1 mouse_genomes_project 3 105617008 105627149 - MGP_C3HHeJ_P0062589 Fam19a3 protein_coding protein_coding MGP_C3HHeJ_T0062590.1 MGP_C3HHeJ_G0027410.1 mouse_genomes_project 3 105626962 105631444 - Fam19a3 protein_coding processed_transcript MGP_C3HHeJ_T0062276.1 MGP_C3HHeJ_G0027340.1 mouse_genomes_project 3 97212152 97400358 + MGP_C3HHeJ_P0062276 Gja5 protein_coding protein_coding MGP_C3HHeJ_T0062278.1 MGP_C3HHeJ_G0027340.1 mouse_genomes_project 3 97345105 97363533 + MGP_C3HHeJ_P0062278 Gja5 protein_coding protein_coding MGP_C3HHeJ_T0062279.1 MGP_C3HHeJ_G0027340.1 mouse_genomes_project 3 97345105 97366309 + MGP_C3HHeJ_P0062279 Gja5 protein_coding protein_coding MGP_C3HHeJ_T0001212.1 MGP_C3HHeJ_G0001144.1 mouse_genomes_project 3 75080686 75082863 + TEC TEC MGP_C3HHeJ_T0099268.1 MGP_C3HHeJ_G0037462.1 mouse_genomes_project 3 85379700 85379762 - Gm24501 snRNA snRNA MGP_C3HHeJ_T0059881.1 MGP_C3HHeJ_G0026824.1 mouse_genomes_project 3 24862451 24869113 + MGP_C3HHeJ_P0059881 Ghsr protein_coding protein_coding MGP_C3HHeJ_T0063815.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873866 147906304 + MGP_C3HHeJ_P0063815 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063816.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873893 147906986 + MGP_C3HHeJ_P0063816 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063817.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873908 147876192 + MGP_C3HHeJ_P0063817 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063818.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873919 147896575 + MGP_C3HHeJ_P0063818 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063819.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873935 147880298 + MGP_C3HHeJ_P0063819 Znhit6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063820.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147873997 147893591 + MGP_C3HHeJ_P0063820 Znhit6 protein_coding protein_coding MGP_C3HHeJ_T0063821.1 MGP_C3HHeJ_G0027661.1 mouse_genomes_project 3 147897777 147906203 + Znhit6 protein_coding retained_intron MGP_C3HHeJ_T0060437.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51795803 51946393 - MGP_C3HHeJ_P0060437 Frem2 protein_coding protein_coding MGP_C3HHeJ_T0060438.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51797549 51826324 - Frem2 protein_coding processed_transcript MGP_C3HHeJ_T0060439.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51797653 51805702 - Frem2 protein_coding retained_intron MGP_C3HHeJ_T0060440.1 MGP_C3HHeJ_G0026923.1 mouse_genomes_project 3 51935335 51941268 - Frem2 protein_coding retained_intron MGP_C3HHeJ_T0098415.1 MGP_C3HHeJ_G0036620.1 mouse_genomes_project 3 99700642 99705004 + Gm43024 sense_intronic sense_intronic MGP_C3HHeJ_T0059777.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16532569 16619640 - MGP_C3HHeJ_P0059777 Pde7a protein_coding protein_coding MGP_C3HHeJ_T0059778.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16534140 16573550 - MGP_C3HHeJ_P0059778 Pde7a protein_coding protein_coding MGP_C3HHeJ_T0059779.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16536843 16539487 - Pde7a protein_coding retained_intron MGP_C3HHeJ_T0059780.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16537180 16542989 - Pde7a protein_coding processed_transcript MGP_C3HHeJ_T0059781.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16539747 16568783 - MGP_C3HHeJ_P0059781 Pde7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059782.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16539819 16545889 - Pde7a protein_coding retained_intron MGP_C3HHeJ_T0059783.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16543264 16619371 - MGP_C3HHeJ_P0059783 Pde7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059784.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16545840 16573507 - MGP_C3HHeJ_P0059784 Pde7a protein_coding protein_coding MGP_C3HHeJ_T0059785.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16565235 16619623 - Pde7a protein_coding retained_intron MGP_C3HHeJ_T0059786.1 MGP_C3HHeJ_G0026805.1 mouse_genomes_project 3 16565333 16619222 - Pde7a protein_coding processed_transcript MGP_C3HHeJ_T0013857.1 MGP_C3HHeJ_G0011961.1 mouse_genomes_project 3 38747233 38747504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007388.1 MGP_C3HHeJ_G0006047.1 mouse_genomes_project 3 15629403 15733463 - lincRNA lincRNA MGP_C3HHeJ_T0061859.1 MGP_C3HHeJ_G0027257.1 mouse_genomes_project 3 94517056 94520574 + Mrpl9 protein_coding retained_intron MGP_C3HHeJ_T0061860.1 MGP_C3HHeJ_G0027257.1 mouse_genomes_project 3 94517063 94525644 + MGP_C3HHeJ_P0061860 Mrpl9 protein_coding protein_coding MGP_C3HHeJ_T0061861.1 MGP_C3HHeJ_G0027257.1 mouse_genomes_project 3 94517075 94528150 + MGP_C3HHeJ_P0061861 Mrpl9 protein_coding protein_coding MGP_C3HHeJ_T0060628.1 MGP_C3HHeJ_G0026966.1 mouse_genomes_project 3 58390018 58403683 + MGP_C3HHeJ_P0060628 C130079G13Rik protein_coding protein_coding MGP_C3HHeJ_T0059837.1 MGP_C3HHeJ_G0026816.1 mouse_genomes_project 3 17654738 17710431 - MGP_C3HHeJ_P0059837 Agtr1b protein_coding protein_coding MGP_C3HHeJ_T0059838.1 MGP_C3HHeJ_G0026816.1 mouse_genomes_project 3 17655162 17710378 - MGP_C3HHeJ_P0059838 Agtr1b protein_coding protein_coding MGP_C3HHeJ_T0013998.1 MGP_C3HHeJ_G0012102.1 mouse_genomes_project 3 86457506 86458453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062215.1 MGP_C3HHeJ_G0027327.1 mouse_genomes_project 3 96897505 96924530 + MGP_C3HHeJ_P0062215 Lix1l protein_coding protein_coding MGP_C3HHeJ_T0062216.1 MGP_C3HHeJ_G0027327.1 mouse_genomes_project 3 96916188 96920001 + Lix1l protein_coding retained_intron MGP_C3HHeJ_T0063647.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140256488 140275985 + Adh1 protein_coding processed_transcript MGP_C3HHeJ_T0063648.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140270585 140283897 + MGP_C3HHeJ_P0063648 Adh1 protein_coding protein_coding MGP_C3HHeJ_T0063649.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140270736 140274149 + Adh1 protein_coding retained_intron MGP_C3HHeJ_T0063650.1 MGP_C3HHeJ_G0027627.1 mouse_genomes_project 3 140270742 140283897 + MGP_C3HHeJ_P0063650 Adh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0063907.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243280 151256283 - MGP_C3HHeJ_P0063907 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063908.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243283 151383508 - MGP_C3HHeJ_P0063908 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063909.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243548 151288721 - MGP_C3HHeJ_P0063909 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063910.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243553 151250683 - MGP_C3HHeJ_P0063910 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063911.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243768 151383407 - MGP_C3HHeJ_P0063911 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063912.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243785 151419285 - MGP_C3HHeJ_P0063912 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063913.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151243785 151419285 - MGP_C3HHeJ_P0063913 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063914.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244632 151383523 - MGP_C3HHeJ_P0063914 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063915.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063915 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063916.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063916 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063917.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063917 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063918.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151244785 151383536 - MGP_C3HHeJ_P0063918 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063919.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151245414 151261657 - MGP_C3HHeJ_P0063919 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063920.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151245437 151263116 - MGP_C3HHeJ_P0063920 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063921.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151245456 151254098 - MGP_C3HHeJ_P0063921 Adgrl2 protein_coding protein_coding MGP_C3HHeJ_T0063922.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151248023 151252878 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0063923.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151254873 151263250 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0063924.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151289538 151383384 - MGP_C3HHeJ_P0063924 Adgrl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0063925.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151318023 151418046 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0063926.1 MGP_C3HHeJ_G0027682.1 mouse_genomes_project 3 151382708 151418212 - Adgrl2 protein_coding retained_intron MGP_C3HHeJ_T0099241.1 MGP_C3HHeJ_G0037435.1 mouse_genomes_project 3 30717670 30717828 + Gm23214 snRNA snRNA MGP_C3HHeJ_T0014030.1 MGP_C3HHeJ_G0012134.1 mouse_genomes_project 3 95660333 95660685 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0062548.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104629193 104635266 + MGP_C3HHeJ_P0062548 Bcl2l15 protein_coding protein_coding MGP_C3HHeJ_T0062549.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104629363 104652975 + MGP_C3HHeJ_P0062549 Bcl2l15 protein_coding protein_coding MGP_C3HHeJ_T0062550.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104629424 104642879 + MGP_C3HHeJ_P0062550 Bcl2l15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0062551.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104645247 104652183 + Bcl2l15 protein_coding processed_transcript MGP_C3HHeJ_T0062552.1 MGP_C3HHeJ_G0027403.1 mouse_genomes_project 3 104650319 104652016 + Bcl2l15 protein_coding processed_transcript MGP_C3HHeJ_T0063418.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427406 132448800 + MGP_C3HHeJ_P0063418 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0063419.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427527 132451478 + MGP_C3HHeJ_P0063419 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0063420.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427530 132435623 + Etnppl protein_coding retained_intron MGP_C3HHeJ_T0063421.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427557 132435641 + Etnppl protein_coding retained_intron MGP_C3HHeJ_T0063422.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132427652 132448668 + MGP_C3HHeJ_P0063422 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0063423.1 MGP_C3HHeJ_G0027581.1 mouse_genomes_project 3 132440509 132443714 + MGP_C3HHeJ_P0063423 Etnppl protein_coding protein_coding MGP_C3HHeJ_T0014114.1 MGP_C3HHeJ_G0012218.1 mouse_genomes_project 3 118571152 118571530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001234.1 MGP_C3HHeJ_G0001166.1 mouse_genomes_project 3 96728407 96731272 - TEC TEC MGP_C3HHeJ_T0007389.1 MGP_C3HHeJ_G0006048.1 mouse_genomes_project 3 15742044 15754269 - 4930433B08Rik lincRNA lincRNA MGP_C3HHeJ_T0001327.1 MGP_C3HHeJ_G0001258.1 mouse_genomes_project 3 137572584 137576481 - TEC TEC MGP_C3HHeJ_T0098121.1 MGP_C3HHeJ_G0036333.1 mouse_genomes_project 3 37529090 37529209 - n-R5s195 rRNA rRNA MGP_C3HHeJ_T0014209.1 MGP_C3HHeJ_G0012313.1 mouse_genomes_project 3 154554460 154555167 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013907.1 MGP_C3HHeJ_G0012011.1 mouse_genomes_project 3 56339390 56339624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0061046.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971256 85051324 + MGP_C3HHeJ_P0061046 Gatb protein_coding protein_coding MGP_C3HHeJ_T0061047.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971256 85042264 + MGP_C3HHeJ_P0061047 Gatb protein_coding protein_coding MGP_C3HHeJ_T0061048.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971264 85048519 + MGP_C3HHeJ_P0061048 Gatb protein_coding protein_coding MGP_C3HHeJ_T0061049.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971269 84973179 + Gatb protein_coding processed_transcript MGP_C3HHeJ_T0061050.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971281 85049537 + MGP_C3HHeJ_P0061050 Gatb protein_coding unknown_likely_coding MGP_C3HHeJ_T0061051.1 MGP_C3HHeJ_G0027065.1 mouse_genomes_project 3 84971332 85049843 + Gatb protein_coding processed_transcript MGP_C3HHeJ_T0062062.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768605 95804474 + MGP_C3HHeJ_P0062062 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0062063.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768606 95803029 + MGP_C3HHeJ_P0062063 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0062064.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768606 95801310 + MGP_C3HHeJ_P0062064 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0062065.1 MGP_C3HHeJ_G0027291.1 mouse_genomes_project 3 95768606 95802954 + MGP_C3HHeJ_P0062065 Hormad1 protein_coding protein_coding MGP_C3HHeJ_T0014198.1 MGP_C3HHeJ_G0012302.1 mouse_genomes_project 3 146928846 146929371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001106.1 MGP_C3HHeJ_G0001040.1 mouse_genomes_project 3 31105891 31107357 - TEC TEC MGP_C3HHeJ_T0060766.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66259258 66305711 + MGP_C3HHeJ_P0060766 Gfm1 protein_coding protein_coding MGP_C3HHeJ_T0060767.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66259278 66287988 + Gfm1 protein_coding processed_transcript MGP_C3HHeJ_T0060768.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66259401 66287236 + MGP_C3HHeJ_P0060768 Gfm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0060769.1 MGP_C3HHeJ_G0026997.1 mouse_genomes_project 3 66285661 66303986 + Gfm1 protein_coding retained_intron MGP_C3HHeJ_T0011451.1 MGP_C3HHeJ_G0009584.1 mouse_genomes_project 3 101364380 101364642 - Gm23465 misc_RNA misc_RNA MGP_C3HHeJ_T0001185.1 MGP_C3HHeJ_G0001117.1 mouse_genomes_project 3 54360868 54362840 - TEC TEC MGP_C3HHeJ_T0014150.1 MGP_C3HHeJ_G0012254.1 mouse_genomes_project 3 132756443 132757744 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001088.1 MGP_C3HHeJ_G0001022.1 mouse_genomes_project 3 20152280 20152531 + TEC TEC MGP_C3HHeJ_T0059737.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036138 12041136 - MGP_C3HHeJ_P0059737 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059738.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036143 12041072 - MGP_C3HHeJ_P0059738 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059739.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036143 12041112 - MGP_C3HHeJ_P0059739 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059740.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12036147 12041105 - MGP_C3HHeJ_P0059740 1810022K09Rik protein_coding protein_coding MGP_C3HHeJ_T0059741.1 MGP_C3HHeJ_G0026788.1 mouse_genomes_project 3 12039034 12041094 - 1810022K09Rik protein_coding retained_intron MGP_C3HHeJ_T0060011.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 29996589 30029556 - MGP_C3HHeJ_P0060011 Zmat3 protein_coding protein_coding MGP_C3HHeJ_T0060012.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 29996593 30029498 - MGP_C3HHeJ_P0060012 Zmat3 protein_coding protein_coding MGP_C3HHeJ_T0060013.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 30024958 30029338 - MGP_C3HHeJ_P0060013 Zmat3 protein_coding protein_coding MGP_C3HHeJ_T0060014.1 MGP_C3HHeJ_G0026850.1 mouse_genomes_project 3 30026072 30029898 - Zmat3 protein_coding retained_intron MGP_C3HHeJ_T0059727.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962265 12000878 + MGP_C3HHeJ_P0059727 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059728.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962300 11996774 + MGP_C3HHeJ_P0059728 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059729.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962301 11994576 + MGP_C3HHeJ_P0059729 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059730.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962356 11990636 + MGP_C3HHeJ_P0059730 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059731.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11962411 11979945 + MGP_C3HHeJ_P0059731 Lrrcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059732.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11976588 11994879 + MGP_C3HHeJ_P0059732 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0059733.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11976664 11982945 + MGP_C3HHeJ_P0059733 Lrrcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059734.1 MGP_C3HHeJ_G0026786.1 mouse_genomes_project 3 11978851 11987798 + MGP_C3HHeJ_P0059734 Lrrcc1 protein_coding protein_coding MGP_C3HHeJ_T0014073.1 MGP_C3HHeJ_G0012177.1 mouse_genomes_project 3 106916880 106917309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0060571.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56235194 56241379 - MGP_C3HHeJ_P0060571 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0060572.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56235204 56240445 - MGP_C3HHeJ_P0060572 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0060573.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56236407 56239178 - MGP_C3HHeJ_P0060573 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0060574.1 MGP_C3HHeJ_G0026949.1 mouse_genomes_project 3 56237960 56240849 - MGP_C3HHeJ_P0060574 Pfn2 protein_coding protein_coding MGP_C3HHeJ_T0010423.1 MGP_C3HHeJ_G0008556.1 mouse_genomes_project 3 32382715 32382794 + Mir1897 miRNA miRNA MGP_C3HHeJ_T0061967.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291548 95292489 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061968.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291549 95295395 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061969.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291551 95292118 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061970.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291553 95292291 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0061971.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291555 95292887 - Scnm1 protein_coding processed_transcript MGP_C3HHeJ_T0061972.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291558 95295633 - MGP_C3HHeJ_P0061972 Scnm1 protein_coding protein_coding MGP_C3HHeJ_T0061973.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95291613 95295517 - MGP_C3HHeJ_P0061973 Scnm1 protein_coding protein_coding MGP_C3HHeJ_T0061974.1 MGP_C3HHeJ_G0027273.1 mouse_genomes_project 3 95292122 95295561 - Scnm1 protein_coding retained_intron MGP_C3HHeJ_T0004151.1 MGP_C3HHeJ_G0003651.1 mouse_genomes_project 3 33801336 33809582 + Mccc1os antisense antisense MGP_C3HHeJ_T0004152.1 MGP_C3HHeJ_G0003651.1 mouse_genomes_project 3 33801416 33813721 + Mccc1os antisense antisense MGP_C3HHeJ_T0004153.1 MGP_C3HHeJ_G0003651.1 mouse_genomes_project 3 33801938 33829812 + Mccc1os antisense antisense MGP_C3HHeJ_T0098466.1 MGP_C3HHeJ_G0036671.1 mouse_genomes_project 3 146709711 146710484 - Gm43560 sense_intronic sense_intronic MGP_C3HHeJ_T0001174.1 MGP_C3HHeJ_G0001106.1 mouse_genomes_project 3 51347958 51351056 - TEC TEC MGP_C3HHeJ_T0004163.1 MGP_C3HHeJ_G0003660.1 mouse_genomes_project 3 50032691 50039055 + Gm37229 antisense antisense MGP_C3HHeJ_T0059913.1 MGP_C3HHeJ_G0026829.1 mouse_genomes_project 3 26237678 26270567 + MGP_C3HHeJ_P0059913 Slc2a2 protein_coding protein_coding MGP_C3HHeJ_T0059914.1 MGP_C3HHeJ_G0026829.1 mouse_genomes_project 3 26237792 26266673 + MGP_C3HHeJ_P0059914 Slc2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0059915.1 MGP_C3HHeJ_G0026829.1 mouse_genomes_project 3 26260884 26267522 + Slc2a2 protein_coding retained_intron MGP_C3HHeJ_T0013869.1 MGP_C3HHeJ_G0011973.1 mouse_genomes_project 3 43768468 43768727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0059971.1 MGP_C3HHeJ_G0026841.1 mouse_genomes_project 3 28377708 28406253 + MGP_C3HHeJ_P0059971 Sec62 protein_coding protein_coding MGP_C3HHeJ_T0059972.1 MGP_C3HHeJ_G0026841.1 mouse_genomes_project 3 28378169 28386547 + Sec62 protein_coding retained_intron MGP_C3HHeJ_T0059973.1 MGP_C3HHeJ_G0026841.1 mouse_genomes_project 3 28403840 28405022 + Sec62 protein_coding processed_transcript MGP_C3HHeJ_T0007666.1 MGP_C3HHeJ_G0006267.1 mouse_genomes_project 3 146057544 146058449 + Gm42708 lincRNA lincRNA MGP_C3HHeJ_T0062306.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98011310 98023924 + MGP_C3HHeJ_P0062306 Prkab2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062307.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98011329 98026937 + MGP_C3HHeJ_P0062307 Prkab2 protein_coding protein_coding MGP_C3HHeJ_T0062308.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98011331 98024058 + MGP_C3HHeJ_P0062308 Prkab2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0062309.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98019654 98026230 + Prkab2 protein_coding retained_intron MGP_C3HHeJ_T0062310.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98020464 98026206 + Prkab2 protein_coding retained_intron MGP_C3HHeJ_T0062311.1 MGP_C3HHeJ_G0027347.1 mouse_genomes_project 3 98023322 98024173 + Prkab2 protein_coding processed_transcript MGP_C3HHeJ_T0099291.1 MGP_C3HHeJ_G0037485.1 mouse_genomes_project 3 96748540 96748737 - Gm25890 snRNA snRNA MGP_C3HHeJ_T0062892.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109701848 109748455 - MGP_C3HHeJ_P0062892 Gpsm2 protein_coding protein_coding MGP_C3HHeJ_T0062893.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109727581 109728671 - Gpsm2 protein_coding retained_intron MGP_C3HHeJ_T0062894.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109727997 109737822 - MGP_C3HHeJ_P0062894 Gpsm2 protein_coding protein_coding MGP_C3HHeJ_T0062895.1 MGP_C3HHeJ_G0027486.1 mouse_genomes_project 3 109729133 109748262 - Gpsm2 protein_coding processed_transcript MGP_C3HHeJ_T0010462.1 MGP_C3HHeJ_G0008595.1 mouse_genomes_project 3 119845074 119845184 + Gm24155 miRNA miRNA MGP_C3HHeJ_T0001087.1 MGP_C3HHeJ_G0001021.1 mouse_genomes_project 3 18154762 18158833 + TEC TEC MGP_C3HHeJ_T0004145.1 MGP_C3HHeJ_G0003647.1 mouse_genomes_project 3 30644883 30688881 + Gm37459 antisense antisense MGP_C3HHeJ_T0099242.1 MGP_C3HHeJ_G0037436.1 mouse_genomes_project 3 33514069 33514174 + Gm25696 snRNA snRNA MGP_C3HHeJ_T0013867.1 MGP_C3HHeJ_G0011971.1 mouse_genomes_project 3 43304760 43305010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013897.1 MGP_C3HHeJ_G0012001.1 mouse_genomes_project 3 53399279 53401092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101937.1 MGP_C3HHeJ_G0039902.1 mouse_genomes_project 3 644590 645018 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001166.1 MGP_C3HHeJ_G0001099.1 mouse_genomes_project 3 50130112 50131938 - TEC TEC MGP_C3HHeJ_T0001167.1 MGP_C3HHeJ_G0001099.1 mouse_genomes_project 3 50130113 50131938 - TEC pseudogene MGP_C3HHeJ_T0004537.1 MGP_C3HHeJ_G0003931.1 mouse_genomes_project 4 156942006 156950123 + Gm13111 antisense antisense MGP_C3HHeJ_T0004389.1 MGP_C3HHeJ_G0003820.1 mouse_genomes_project 4 61539766 61547618 - Gm11209 antisense antisense MGP_C3HHeJ_T0065485.1 MGP_C3HHeJ_G0028021.1 mouse_genomes_project 4 56581331 56588255 - MGP_C3HHeJ_P0065485 D630039A03Rik protein_coding protein_coding MGP_C3HHeJ_T0014309.1 MGP_C3HHeJ_G0012413.1 mouse_genomes_project 4 25244942 25245265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068760.1 MGP_C3HHeJ_G0028770.1 mouse_genomes_project 4 144829697 144870375 + MGP_C3HHeJ_P0068760 protein_coding protein_coding MGP_C3HHeJ_T0064253.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3051949 3109387 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064254.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3051949 3109387 - MGP_C3HHeJ_P0064254 Nsmaf protein_coding protein_coding MGP_C3HHeJ_T0064255.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3052153 3054749 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064256.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3052511 3109212 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064257.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3062128 3109371 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064258.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3064747 3079618 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064259.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3080199 3087345 - Nsmaf protein_coding retained_intron MGP_C3HHeJ_T0064260.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3084077 3108695 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064261.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3085356 3101336 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0064262.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3087918 3109213 - MGP_C3HHeJ_P0064262 Nsmaf protein_coding protein_coding MGP_C3HHeJ_T0064263.1 MGP_C3HHeJ_G0027736.1 mouse_genomes_project 4 3092559 3099409 - Nsmaf protein_coding processed_transcript MGP_C3HHeJ_T0068985.1 MGP_C3HHeJ_G0028841.1 mouse_genomes_project 4 151479865 151487036 - MGP_C3HHeJ_P0068985 Rbp7 protein_coding protein_coding MGP_C3HHeJ_T0068986.1 MGP_C3HHeJ_G0028841.1 mouse_genomes_project 4 151479881 151487028 - Rbp7 protein_coding processed_transcript MGP_C3HHeJ_T0100646.1 MGP_C3HHeJ_G0038840.1 mouse_genomes_project 4 80684794 80684925 - Gm25803 snoRNA snoRNA MGP_C3HHeJ_T0065565.1 MGP_C3HHeJ_G0028043.1 mouse_genomes_project 4 60758503 60761327 - MGP_C3HHeJ_P0065565 Mup5 protein_coding protein_coding MGP_C3HHeJ_T0007946.1 MGP_C3HHeJ_G0006482.1 mouse_genomes_project 4 155385153 155386536 - Gm13173 lincRNA lincRNA MGP_C3HHeJ_T0014258.1 MGP_C3HHeJ_G0012362.1 mouse_genomes_project 4 12413206 12413661 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014307.1 MGP_C3HHeJ_G0012411.1 mouse_genomes_project 4 24406410 24406680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017887.1 MGP_C3HHeJ_G0015345.1 mouse_genomes_project 4 156952026 156961568 - Gm13110 processed_transcript processed_transcript MGP_C3HHeJ_T0064852.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793475 39796943 + MGP_C3HHeJ_P0064852 Galt protein_coding protein_coding MGP_C3HHeJ_T0064853.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793475 39796943 + MGP_C3HHeJ_P0064853 Galt protein_coding protein_coding MGP_C3HHeJ_T0064854.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793500 39795797 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064855.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39793500 39794695 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064856.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794005 39795728 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064857.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794087 39795520 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064858.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794208 39795728 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064859.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794457 39796943 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064860.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794501 39796486 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0064861.1 MGP_C3HHeJ_G0027881.1 mouse_genomes_project 4 39794509 39796026 + Galt protein_coding processed_transcript MGP_C3HHeJ_T0004502.1 MGP_C3HHeJ_G0003905.1 mouse_genomes_project 4 143153125 143156939 + Fhad1os1 antisense antisense MGP_C3HHeJ_T0004523.1 MGP_C3HHeJ_G0003919.1 mouse_genomes_project 4 151510383 151515247 + antisense antisense MGP_C3HHeJ_T0014335.1 MGP_C3HHeJ_G0012439.1 mouse_genomes_project 4 32009501 32009793 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066266.1 MGP_C3HHeJ_G0028212.1 mouse_genomes_project 4 105834693 105840473 + MGP_C3HHeJ_P0066266 Gm12728 protein_coding protein_coding MGP_C3HHeJ_T0066267.1 MGP_C3HHeJ_G0028212.1 mouse_genomes_project 4 105835357 105840473 + MGP_C3HHeJ_P0066267 Gm12728 protein_coding protein_coding MGP_C3HHeJ_T0066268.1 MGP_C3HHeJ_G0028212.1 mouse_genomes_project 4 105839028 105840756 + Gm12728 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0068590.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141850422 141882923 - MGP_C3HHeJ_P0068590 Padi4 protein_coding protein_coding MGP_C3HHeJ_T0068591.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141856757 141862582 - Padi4 protein_coding processed_transcript MGP_C3HHeJ_T0068592.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141860559 141866434 - Padi4 protein_coding processed_transcript MGP_C3HHeJ_T0068593.1 MGP_C3HHeJ_G0028726.1 mouse_genomes_project 4 141862750 141866427 - Padi4 protein_coding processed_transcript MGP_C3HHeJ_T0004364.1 MGP_C3HHeJ_G0003798.1 mouse_genomes_project 4 39494541 39496255 + Fam219aos antisense antisense MGP_C3HHeJ_T0067136.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119856289 119896756 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067137.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119857233 119953807 - MGP_C3HHeJ_P0067137 Ccdc30 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067138.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119857240 119954003 - MGP_C3HHeJ_P0067138 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067139.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119877481 119890180 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067140.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119889321 119920543 - MGP_C3HHeJ_P0067140 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067141.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119889322 119896549 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0067142.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119890269 119930372 - MGP_C3HHeJ_P0067142 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067143.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119896660 119913052 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0067144.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119903474 119920617 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0067145.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119903476 119915018 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067146.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119903484 119920543 - MGP_C3HHeJ_P0067146 Ccdc30 protein_coding protein_coding MGP_C3HHeJ_T0067147.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119909290 119920529 - Ccdc30 protein_coding retained_intron MGP_C3HHeJ_T0067148.1 MGP_C3HHeJ_G0028395.1 mouse_genomes_project 4 119929562 119938589 - Ccdc30 protein_coding processed_transcript MGP_C3HHeJ_T0066664.1 MGP_C3HHeJ_G0028284.1 mouse_genomes_project 4 114663082 114874954 + MGP_C3HHeJ_P0066664 Trabd2b protein_coding protein_coding MGP_C3HHeJ_T0007951.1 MGP_C3HHeJ_G0006487.1 mouse_genomes_project 4 158105357 158111566 + Gm26840 lincRNA lincRNA MGP_C3HHeJ_T0067655.1 MGP_C3HHeJ_G0028521.1 mouse_genomes_project 4 129740354 129741121 + MGP_C3HHeJ_P0067655 Fam229a protein_coding protein_coding MGP_C3HHeJ_T0067656.1 MGP_C3HHeJ_G0028521.1 mouse_genomes_project 4 129740404 129741121 + Fam229a protein_coding retained_intron MGP_C3HHeJ_T0010506.1 MGP_C3HHeJ_G0008639.1 mouse_genomes_project 4 43120169 43120287 + Gm22639 miRNA miRNA MGP_C3HHeJ_T0007711.1 MGP_C3HHeJ_G0006298.1 mouse_genomes_project 4 4241019 4254141 + 8430436N08Rik lincRNA lincRNA MGP_C3HHeJ_T0014262.1 MGP_C3HHeJ_G0012366.1 mouse_genomes_project 4 12903617 12904939 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007723.1 MGP_C3HHeJ_G0006306.1 mouse_genomes_project 4 10781794 10863334 - Gm11823 lincRNA lincRNA MGP_C3HHeJ_T0004427.1 MGP_C3HHeJ_G0003845.1 mouse_genomes_project 4 107946983 107949932 - Lrp8os1 antisense antisense MGP_C3HHeJ_T0004428.1 MGP_C3HHeJ_G0003845.1 mouse_genomes_project 4 107947004 107949932 - Lrp8os1 antisense antisense MGP_C3HHeJ_T0014547.1 MGP_C3HHeJ_G0012651.1 mouse_genomes_project 4 115745766 115746091 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065309.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46430588 46473358 + MGP_C3HHeJ_P0065309 Nr4a3 protein_coding protein_coding MGP_C3HHeJ_T0065310.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46430666 46435601 + Nr4a3 protein_coding processed_transcript MGP_C3HHeJ_T0065311.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46434549 46473360 + MGP_C3HHeJ_P0065311 Nr4a3 protein_coding protein_coding MGP_C3HHeJ_T0065312.1 MGP_C3HHeJ_G0027970.1 mouse_genomes_project 4 46436683 46442175 + Nr4a3 protein_coding processed_transcript MGP_C3HHeJ_T0014397.1 MGP_C3HHeJ_G0012501.1 mouse_genomes_project 4 53961509 53961894 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065746.1 MGP_C3HHeJ_G0028090.1 mouse_genomes_project 4 79331139 79333838 + MGP_C3HHeJ_P0065746 protein_coding protein_coding MGP_C3HHeJ_T0014534.1 MGP_C3HHeJ_G0012638.1 mouse_genomes_project 4 108895243 108895799 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098133.1 MGP_C3HHeJ_G0036345.1 mouse_genomes_project 4 81259730 81259841 + n-R5s187 rRNA rRNA MGP_C3HHeJ_T0014530.1 MGP_C3HHeJ_G0012634.1 mouse_genomes_project 4 108449967 108450763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066770.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116478477 116484272 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0066771.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116481129 116508242 - MGP_C3HHeJ_P0066771 Rad54l protein_coding protein_coding MGP_C3HHeJ_T0066772.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116481188 116508216 - MGP_C3HHeJ_P0066772 Rad54l protein_coding protein_coding MGP_C3HHeJ_T0066773.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116493983 116507539 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0066774.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116495277 116496771 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0066775.1 MGP_C3HHeJ_G0028314.1 mouse_genomes_project 4 116501635 116508247 - Rad54l protein_coding processed_transcript MGP_C3HHeJ_T0007850.1 MGP_C3HHeJ_G0006412.1 mouse_genomes_project 4 119504016 119518017 - Gm12865 lincRNA lincRNA MGP_C3HHeJ_T0068698.1 MGP_C3HHeJ_G0028750.1 mouse_genomes_project 4 142780047 142784912 - MGP_C3HHeJ_P0068698 Slc25a34 protein_coding protein_coding MGP_C3HHeJ_T0099360.1 MGP_C3HHeJ_G0037554.1 mouse_genomes_project 4 85533704 85533805 - Gm25811 snRNA snRNA MGP_C3HHeJ_T0068254.1 MGP_C3HHeJ_G0028645.1 mouse_genomes_project 4 136429144 136454397 + MGP_C3HHeJ_P0068254 Il22ra1 protein_coding protein_coding MGP_C3HHeJ_T0065284.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45361620 45404373 - MGP_C3HHeJ_P0065284 Anks6 protein_coding protein_coding MGP_C3HHeJ_T0065285.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45361640 45404373 - MGP_C3HHeJ_P0065285 Anks6 protein_coding protein_coding MGP_C3HHeJ_T0065286.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45362969 45371704 - Anks6 protein_coding processed_transcript MGP_C3HHeJ_T0065287.1 MGP_C3HHeJ_G0027964.1 mouse_genomes_project 4 45385478 45387163 - Anks6 protein_coding processed_transcript MGP_C3HHeJ_T0068016.1 MGP_C3HHeJ_G0028591.1 mouse_genomes_project 4 134008412 134017385 - MGP_C3HHeJ_P0068016 Trnp1 protein_coding protein_coding MGP_C3HHeJ_T0068017.1 MGP_C3HHeJ_G0028591.1 mouse_genomes_project 4 134008430 134016554 - Trnp1 protein_coding processed_transcript MGP_C3HHeJ_T0069107.1 MGP_C3HHeJ_G0028865.1 mouse_genomes_project 4 153237299 153239173 + MGP_C3HHeJ_P0069107 Gm13090 protein_coding protein_coding MGP_C3HHeJ_T0099368.1 MGP_C3HHeJ_G0037562.1 mouse_genomes_project 4 99818801 99818883 + Gm26425 snRNA snRNA MGP_C3HHeJ_T0007937.1 MGP_C3HHeJ_G0006473.1 mouse_genomes_project 4 150310473 150314881 - Gm13200 lincRNA lincRNA MGP_C3HHeJ_T0011471.1 MGP_C3HHeJ_G0009604.1 mouse_genomes_project 4 52277936 52278235 - Gm25445 misc_RNA misc_RNA MGP_C3HHeJ_T0014578.1 MGP_C3HHeJ_G0012682.1 mouse_genomes_project 4 121971051 121971292 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068473.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139508985 139585160 - MGP_C3HHeJ_P0068473 Vwa5b1 protein_coding protein_coding MGP_C3HHeJ_T0068474.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139510971 139522605 - MGP_C3HHeJ_P0068474 Vwa5b1 protein_coding protein_coding MGP_C3HHeJ_T0068475.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139523151 139585311 - MGP_C3HHeJ_P0068475 Vwa5b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068476.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139542130 139555446 - Vwa5b1 protein_coding processed_transcript MGP_C3HHeJ_T0068477.1 MGP_C3HHeJ_G0028696.1 mouse_genomes_project 4 139549070 139555913 - Vwa5b1 protein_coding processed_transcript MGP_C3HHeJ_T0064917.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41196688 41200704 - MGP_C3HHeJ_P0064917 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064918.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197024 41198832 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064919.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197040 41198909 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064920.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197227 41200450 - MGP_C3HHeJ_P0064920 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064921.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41197239 41199588 - MGP_C3HHeJ_P0064921 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064922.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198558 41200444 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064923.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198591 41200364 - MGP_C3HHeJ_P0064923 Stoml2 protein_coding protein_coding MGP_C3HHeJ_T0064924.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198609 41199494 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064925.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41198767 41199595 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064926.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41199035 41200352 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0064927.1 MGP_C3HHeJ_G0027897.1 mouse_genomes_project 4 41199487 41200430 - Stoml2 protein_coding processed_transcript MGP_C3HHeJ_T0004344.1 MGP_C3HHeJ_G0003783.1 mouse_genomes_project 4 6011555 6014944 - Gm11816 antisense antisense MGP_C3HHeJ_T0004345.1 MGP_C3HHeJ_G0003783.1 mouse_genomes_project 4 6013410 6014886 - Gm11816 antisense antisense MGP_C3HHeJ_T0064862.1 MGP_C3HHeJ_G0027882.1 mouse_genomes_project 4 40186438 40187104 + MGP_C3HHeJ_P0064862 protein_coding protein_coding MGP_C3HHeJ_T0010544.1 MGP_C3HHeJ_G0008677.1 mouse_genomes_project 4 132850599 132850695 + Gm25707 miRNA miRNA MGP_C3HHeJ_T0068094.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674325 134701733 + MGP_C3HHeJ_P0068094 Ubxn11 protein_coding protein_coding MGP_C3HHeJ_T0068095.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674330 134700141 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068096.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674363 134700750 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068097.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674375 134701751 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068098.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674378 134690487 + MGP_C3HHeJ_P0068098 Ubxn11 protein_coding protein_coding MGP_C3HHeJ_T0068099.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134674379 134683980 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068100.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134682134 134687299 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068101.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134686879 134698574 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068102.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134698444 134701750 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0068103.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134699026 134701476 + MGP_C3HHeJ_P0068103 Ubxn11 protein_coding protein_coding MGP_C3HHeJ_T0068104.1 MGP_C3HHeJ_G0028608.1 mouse_genomes_project 4 134700902 134701751 + Ubxn11 protein_coding processed_transcript MGP_C3HHeJ_T0065433.1 MGP_C3HHeJ_G0028010.1 mouse_genomes_project 4 55365537 55367050 + MGP_C3HHeJ_P0065433 Actl7a protein_coding protein_coding MGP_C3HHeJ_T0065480.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56384950 56533859 + protein_coding processed_transcript MGP_C3HHeJ_T0065481.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56421273 56569846 + MGP_C3HHeJ_P0065481 protein_coding protein_coding MGP_C3HHeJ_T0065482.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56458095 56532139 + MGP_C3HHeJ_P0065482 protein_coding protein_coding MGP_C3HHeJ_T0065483.1 MGP_C3HHeJ_G0028020.1 mouse_genomes_project 4 56506299 56531986 + MGP_C3HHeJ_P0065483 protein_coding protein_coding MGP_C3HHeJ_T0067789.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130561036 130584508 - MGP_C3HHeJ_P0067789 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067790.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130561036 130584140 - MGP_C3HHeJ_P0067790 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067791.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130561440 130589003 - MGP_C3HHeJ_P0067791 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067792.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130571964 130584454 - MGP_C3HHeJ_P0067792 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0067793.1 MGP_C3HHeJ_G0028543.1 mouse_genomes_project 4 130572579 130584467 - MGP_C3HHeJ_P0067793 Serinc2 protein_coding protein_coding MGP_C3HHeJ_T0065866.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86082177 86115532 - MGP_C3HHeJ_P0065866 Haus6 protein_coding protein_coding MGP_C3HHeJ_T0065867.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86088493 86115532 - Haus6 protein_coding processed_transcript MGP_C3HHeJ_T0065868.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86106376 86115496 - Haus6 protein_coding processed_transcript MGP_C3HHeJ_T0065869.1 MGP_C3HHeJ_G0028108.1 mouse_genomes_project 4 86109136 86115526 - MGP_C3HHeJ_P0065869 Haus6 protein_coding protein_coding MGP_C3HHeJ_T0100615.1 MGP_C3HHeJ_G0038809.1 mouse_genomes_project 4 38373197 38373292 - Gm23338 snoRNA snoRNA MGP_C3HHeJ_T0065965.1 MGP_C3HHeJ_G0028141.1 mouse_genomes_project 4 93089576 93090953 - MGP_C3HHeJ_P0065965 Tusc1 protein_coding protein_coding MGP_C3HHeJ_T0014512.1 MGP_C3HHeJ_G0012616.1 mouse_genomes_project 4 101797779 101798480 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067744.1 MGP_C3HHeJ_G0028536.1 mouse_genomes_project 4 130239700 130245564 + MGP_C3HHeJ_P0067744 Spocd1 protein_coding protein_coding MGP_C3HHeJ_T0067745.1 MGP_C3HHeJ_G0028536.1 mouse_genomes_project 4 130239874 130249098 + MGP_C3HHeJ_P0067745 Spocd1 protein_coding protein_coding MGP_C3HHeJ_T0014453.1 MGP_C3HHeJ_G0012557.1 mouse_genomes_project 4 79326826 79327327 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014336.1 MGP_C3HHeJ_G0012440.1 mouse_genomes_project 4 32406254 32406922 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065030.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41714205 41740282 - MGP_C3HHeJ_P0065030 Tln1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065031.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41714216 41745960 - MGP_C3HHeJ_P0065031 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065032.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41728929 41731167 - MGP_C3HHeJ_P0065032 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065033.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41730341 41734791 - MGP_C3HHeJ_P0065033 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065034.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41736983 41737983 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0065035.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41738045 41745695 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0065036.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41738637 41741989 - MGP_C3HHeJ_P0065036 Tln1 protein_coding protein_coding MGP_C3HHeJ_T0065037.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41739095 41739478 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0065038.1 MGP_C3HHeJ_G0027910.1 mouse_genomes_project 4 41742871 41746228 - Tln1 protein_coding processed_transcript MGP_C3HHeJ_T0014300.1 MGP_C3HHeJ_G0012404.1 mouse_genomes_project 4 22687164 22687655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066561.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484631 109585678 + MGP_C3HHeJ_P0066561 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066562.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484666 109583548 + MGP_C3HHeJ_P0066562 Eps15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066563.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484739 109517277 + MGP_C3HHeJ_P0066563 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066564.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484775 109583333 + MGP_C3HHeJ_P0066564 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066565.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109484775 109583333 + MGP_C3HHeJ_P0066565 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066566.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109508819 109510282 + Eps15 protein_coding retained_intron MGP_C3HHeJ_T0066567.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109513521 109517580 + Eps15 protein_coding retained_intron MGP_C3HHeJ_T0066568.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109547339 109584427 + MGP_C3HHeJ_P0066568 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066569.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109547533 109564782 + Eps15 protein_coding retained_intron MGP_C3HHeJ_T0066570.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109568413 109583644 + MGP_C3HHeJ_P0066570 Eps15 protein_coding protein_coding MGP_C3HHeJ_T0066571.1 MGP_C3HHeJ_G0028265.1 mouse_genomes_project 4 109568457 109580736 + Eps15 protein_coding processed_transcript MGP_C3HHeJ_T0067394.1 MGP_C3HHeJ_G0028464.1 mouse_genomes_project 4 126097354 126105954 + MGP_C3HHeJ_P0067394 Mrps15 protein_coding protein_coding MGP_C3HHeJ_T0067395.1 MGP_C3HHeJ_G0028464.1 mouse_genomes_project 4 126097406 126102395 + Mrps15 protein_coding processed_transcript MGP_C3HHeJ_T0067396.1 MGP_C3HHeJ_G0028464.1 mouse_genomes_project 4 126097663 126100913 + Mrps15 protein_coding processed_transcript MGP_C3HHeJ_T0014552.1 MGP_C3HHeJ_G0012656.1 mouse_genomes_project 4 116845963 116846380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065260.1 MGP_C3HHeJ_G0027957.1 mouse_genomes_project 4 44729689 44748924 - MGP_C3HHeJ_P0065260 Hemgn protein_coding protein_coding MGP_C3HHeJ_T0065261.1 MGP_C3HHeJ_G0027957.1 mouse_genomes_project 4 44729689 44739918 - MGP_C3HHeJ_P0065261 Hemgn protein_coding protein_coding MGP_C3HHeJ_T0066587.1 MGP_C3HHeJ_G0028270.1 mouse_genomes_project 4 109889596 110187427 + MGP_C3HHeJ_P0066587 Faf1 protein_coding protein_coding MGP_C3HHeJ_T0066588.1 MGP_C3HHeJ_G0028270.1 mouse_genomes_project 4 109890005 109896355 + Faf1 protein_coding processed_transcript MGP_C3HHeJ_T0066589.1 MGP_C3HHeJ_G0028270.1 mouse_genomes_project 4 110061315 110145992 + Faf1 protein_coding processed_transcript MGP_C3HHeJ_T0004483.1 MGP_C3HHeJ_G0003890.1 mouse_genomes_project 4 138272540 138299806 - antisense antisense MGP_C3HHeJ_T0069041.1 MGP_C3HHeJ_G0028853.1 mouse_genomes_project 4 152215872 152238307 + MGP_C3HHeJ_P0069041 Slc2a7 protein_coding protein_coding MGP_C3HHeJ_T0069042.1 MGP_C3HHeJ_G0028853.1 mouse_genomes_project 4 152225431 152226304 + Slc2a7 protein_coding retained_intron MGP_C3HHeJ_T0004471.1 MGP_C3HHeJ_G0003879.1 mouse_genomes_project 4 131141555 131142216 - Gm12970 antisense antisense MGP_C3HHeJ_T0065580.1 MGP_C3HHeJ_G0028049.1 mouse_genomes_project 4 61290282 61313820 - MGP_C3HHeJ_P0065580 Cdc26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065582.1 MGP_C3HHeJ_G0028049.1 mouse_genomes_project 4 61302534 61313820 - MGP_C3HHeJ_P0065582 Cdc26 protein_coding protein_coding MGP_C3HHeJ_T0065583.1 MGP_C3HHeJ_G0028049.1 mouse_genomes_project 4 61308784 61313094 - Cdc26 protein_coding retained_intron MGP_C3HHeJ_T0065100.1 MGP_C3HHeJ_G0027928.1 mouse_genomes_project 4 42164302 42188234 + MGP_C3HHeJ_P0065100 Glipr2 protein_coding protein_coding MGP_C3HHeJ_T0065101.1 MGP_C3HHeJ_G0027928.1 mouse_genomes_project 4 42164593 42188234 + MGP_C3HHeJ_P0065101 Glipr2 protein_coding protein_coding MGP_C3HHeJ_T0066039.1 MGP_C3HHeJ_G0028162.1 mouse_genomes_project 4 96981858 96982185 - MGP_C3HHeJ_P0066039 Gm10192 protein_coding protein_coding MGP_C3HHeJ_T0066280.1 MGP_C3HHeJ_G0028218.1 mouse_genomes_project 4 106694868 106712535 + MGP_C3HHeJ_P0066280 Ttc22 protein_coding protein_coding MGP_C3HHeJ_T0066281.1 MGP_C3HHeJ_G0028218.1 mouse_genomes_project 4 106708322 106709974 + Ttc22 protein_coding processed_transcript MGP_C3HHeJ_T0004413.1 MGP_C3HHeJ_G0003834.1 mouse_genomes_project 4 99004318 99006713 + Gm12705 antisense antisense MGP_C3HHeJ_T0067069.1 MGP_C3HHeJ_G0028371.1 mouse_genomes_project 4 119178923 119179871 + MGP_C3HHeJ_P0067069 Olfr62 protein_coding protein_coding MGP_C3HHeJ_T0065668.1 MGP_C3HHeJ_G0028069.1 mouse_genomes_project 4 62667437 62685463 - MGP_C3HHeJ_P0065668 Tnfsf15 protein_coding protein_coding MGP_C3HHeJ_T0064361.1 MGP_C3HHeJ_G0027754.1 mouse_genomes_project 4 8382015 8389957 + MGP_C3HHeJ_P0064361 Fsbp protein_coding protein_coding MGP_C3HHeJ_T0068949.1 MGP_C3HHeJ_G0028836.1 mouse_genomes_project 4 151141310 151143035 - MGP_C3HHeJ_P0068949 Cort protein_coding protein_coding MGP_C3HHeJ_T0064534.1 MGP_C3HHeJ_G0027803.1 mouse_genomes_project 4 22743987 22944978 - MGP_C3HHeJ_P0064534 Fut9 protein_coding protein_coding MGP_C3HHeJ_T0064535.1 MGP_C3HHeJ_G0027803.1 mouse_genomes_project 4 22753574 22945076 - MGP_C3HHeJ_P0064535 Fut9 protein_coding protein_coding MGP_C3HHeJ_T0064536.1 MGP_C3HHeJ_G0027803.1 mouse_genomes_project 4 22942534 22944687 - Fut9 protein_coding processed_transcript MGP_C3HHeJ_T0064747.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39151008 39239428 - MGP_C3HHeJ_P0064747 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064748.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39151011 39239419 - MGP_C3HHeJ_P0064748 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064749.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39151888 39152461 - MGP_C3HHeJ_P0064749 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064750.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39156549 39157409 - Ubap2 protein_coding processed_transcript MGP_C3HHeJ_T0064751.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39164226 39171161 - MGP_C3HHeJ_P0064751 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064752.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39178872 39209822 - MGP_C3HHeJ_P0064752 Ubap2 protein_coding protein_coding MGP_C3HHeJ_T0064753.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39178875 39239400 - Ubap2 protein_coding processed_transcript MGP_C3HHeJ_T0064754.1 MGP_C3HHeJ_G0027855.1 mouse_genomes_project 4 39238349 39239411 - Ubap2 protein_coding processed_transcript MGP_C3HHeJ_T0068950.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151143392 151155113 - MGP_C3HHeJ_P0068950 Apitd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068951.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144723 151155134 - MGP_C3HHeJ_P0068951 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0068952.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144730 151146640 - Apitd1 protein_coding retained_intron MGP_C3HHeJ_T0068953.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144956 151155140 - MGP_C3HHeJ_P0068953 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0068954.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151144959 151155130 - MGP_C3HHeJ_P0068954 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0068955.1 MGP_C3HHeJ_G0028837.1 mouse_genomes_project 4 151147547 151155142 - MGP_C3HHeJ_P0068955 Apitd1 protein_coding protein_coding MGP_C3HHeJ_T0069449.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988055 157991358 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069450.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988060 158000472 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069451.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988060 158003586 - MGP_C3HHeJ_P0069451 Mib2 protein_coding protein_coding MGP_C3HHeJ_T0069452.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157988061 157990106 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069453.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157989216 157990106 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069454.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157990321 157992962 - MGP_C3HHeJ_P0069454 Mib2 protein_coding protein_coding MGP_C3HHeJ_T0069455.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157991002 157991718 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069456.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 157994698 158003585 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0069457.1 MGP_C3HHeJ_G0028923.1 mouse_genomes_project 4 158000409 158003581 - Mib2 protein_coding processed_transcript MGP_C3HHeJ_T0014520.1 MGP_C3HHeJ_G0012624.1 mouse_genomes_project 4 105568710 105569161 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068213.1 MGP_C3HHeJ_G0028637.1 mouse_genomes_project 4 135875671 135938852 - MGP_C3HHeJ_P0068213 Clic4 protein_coding protein_coding MGP_C3HHeJ_T0068214.1 MGP_C3HHeJ_G0028637.1 mouse_genomes_project 4 135882266 135939077 - Clic4 protein_coding retained_intron MGP_C3HHeJ_T0064211.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601175 605806 + MGP_C3HHeJ_P0064211 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064212.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601175 605801 + MGP_C3HHeJ_P0064212 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064213.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601177 605750 + MGP_C3HHeJ_P0064213 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064214.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605799 + MGP_C3HHeJ_P0064214 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064215.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 613306 + MGP_C3HHeJ_P0064215 Chchd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064216.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605806 + MGP_C3HHeJ_P0064216 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064217.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605328 + MGP_C3HHeJ_P0064217 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064218.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601201 605806 + MGP_C3HHeJ_P0064218 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064219.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601207 605782 + MGP_C3HHeJ_P0064219 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064220.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601330 605684 + MGP_C3HHeJ_P0064220 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064221.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601709 603697 + Chchd7 protein_coding retained_intron MGP_C3HHeJ_T0064222.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 601787 605804 + MGP_C3HHeJ_P0064222 Chchd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064223.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 603131 605803 + MGP_C3HHeJ_P0064223 Chchd7 protein_coding protein_coding MGP_C3HHeJ_T0064224.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 605691 612471 + Chchd7 protein_coding processed_transcript MGP_C3HHeJ_T0064225.1 MGP_C3HHeJ_G0027727.1 mouse_genomes_project 4 609079 612132 + Chchd7 protein_coding retained_intron MGP_C3HHeJ_T0102012.1 MGP_C3HHeJ_G0039977.1 mouse_genomes_project 4 119185770 119186684 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099324.1 MGP_C3HHeJ_G0037518.1 mouse_genomes_project 4 5932912 5933018 + Gm23423 snRNA snRNA MGP_C3HHeJ_T0004514.1 MGP_C3HHeJ_G0003913.1 mouse_genomes_project 4 150911789 150912604 - Gm15969 antisense antisense MGP_C3HHeJ_T0014463.1 MGP_C3HHeJ_G0012567.1 mouse_genomes_project 4 84125347 84126395 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068844.1 MGP_C3HHeJ_G0028813.1 mouse_genomes_project 4 149867823 149874145 + MGP_C3HHeJ_P0068844 2510039O18Rik protein_coding protein_coding MGP_C3HHeJ_T0099387.1 MGP_C3HHeJ_G0037581.1 mouse_genomes_project 4 124325880 124325984 - Gm22983 snRNA snRNA MGP_C3HHeJ_T0014484.1 MGP_C3HHeJ_G0012588.1 mouse_genomes_project 4 92118340 92118638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068270.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136645849 136665408 + MGP_C3HHeJ_P0068270 Fuca1 protein_coding protein_coding MGP_C3HHeJ_T0068271.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136654956 136659820 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0068272.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136658044 136664388 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0068273.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136658171 136660389 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0068274.1 MGP_C3HHeJ_G0028650.1 mouse_genomes_project 4 136661742 136664388 + Fuca1 protein_coding processed_transcript MGP_C3HHeJ_T0099353.1 MGP_C3HHeJ_G0037547.1 mouse_genomes_project 4 61159819 61159926 + Gm23148 snRNA snRNA MGP_C3HHeJ_T0068192.1 MGP_C3HHeJ_G0028632.1 mouse_genomes_project 4 135490148 135527642 + MGP_C3HHeJ_P0068192 Rhd protein_coding protein_coding MGP_C3HHeJ_T0068193.1 MGP_C3HHeJ_G0028632.1 mouse_genomes_project 4 135508447 135521010 + Rhd protein_coding retained_intron MGP_C3HHeJ_T0064642.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32241190 32284355 - MGP_C3HHeJ_P0064642 Cfap206 protein_coding protein_coding MGP_C3HHeJ_T0064643.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32241592 32273122 - Cfap206 protein_coding processed_transcript MGP_C3HHeJ_T0064644.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32264760 32284327 - MGP_C3HHeJ_P0064644 Cfap206 protein_coding protein_coding MGP_C3HHeJ_T0064645.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32275009 32284344 - MGP_C3HHeJ_P0064645 Cfap206 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064646.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32275040 32284344 - MGP_C3HHeJ_P0064646 Cfap206 protein_coding protein_coding MGP_C3HHeJ_T0064647.1 MGP_C3HHeJ_G0027828.1 mouse_genomes_project 4 32277156 32284344 - Cfap206 protein_coding processed_transcript MGP_C3HHeJ_T0010569.1 MGP_C3HHeJ_G0008702.1 mouse_genomes_project 4 155245290 155245385 - Gm25779 miRNA miRNA MGP_C3HHeJ_T0066262.1 MGP_C3HHeJ_G0028209.1 mouse_genomes_project 4 104951708 105060684 + MGP_C3HHeJ_P0066262 1700024P16Rik protein_coding protein_coding MGP_C3HHeJ_T0066263.1 MGP_C3HHeJ_G0028209.1 mouse_genomes_project 4 104951776 105060684 + MGP_C3HHeJ_P0066263 1700024P16Rik protein_coding protein_coding MGP_C3HHeJ_T0065940.1 MGP_C3HHeJ_G0028133.1 mouse_genomes_project 4 88821603 88871991 + MGP_C3HHeJ_P0065940 Mtap protein_coding protein_coding MGP_C3HHeJ_T0065941.1 MGP_C3HHeJ_G0028133.1 mouse_genomes_project 4 88867273 88870384 + Mtap protein_coding processed_transcript MGP_C3HHeJ_T0099343.1 MGP_C3HHeJ_G0037537.1 mouse_genomes_project 4 39277327 39277435 - Gm26049 snRNA snRNA MGP_C3HHeJ_T0004503.1 MGP_C3HHeJ_G0003906.1 mouse_genomes_project 4 143189666 143201558 + 4930455G09Rik antisense antisense MGP_C3HHeJ_T0100630.1 MGP_C3HHeJ_G0038824.1 mouse_genomes_project 4 55302241 55302373 - Gm26144 snoRNA snoRNA MGP_C3HHeJ_T0065607.1 MGP_C3HHeJ_G0028057.1 mouse_genomes_project 4 61431462 61457580 + MGP_C3HHeJ_P0065607 4933430I17Rik protein_coding protein_coding MGP_C3HHeJ_T0065608.1 MGP_C3HHeJ_G0028057.1 mouse_genomes_project 4 61431901 61457349 + MGP_C3HHeJ_P0065608 4933430I17Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0067627.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129437215 129445549 - MGP_C3HHeJ_P0067627 C77080 protein_coding protein_coding MGP_C3HHeJ_T0067628.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129437215 129458008 - MGP_C3HHeJ_P0067628 C77080 protein_coding protein_coding MGP_C3HHeJ_T0067629.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129439092 129467690 - MGP_C3HHeJ_P0067629 C77080 protein_coding protein_coding MGP_C3HHeJ_T0067630.1 MGP_C3HHeJ_G0028513.1 mouse_genomes_project 4 129442997 129482040 - MGP_C3HHeJ_P0067630 C77080 protein_coding protein_coding MGP_C3HHeJ_T0017849.1 MGP_C3HHeJ_G0015325.1 mouse_genomes_project 4 106302698 106350416 + Gm12724 processed_transcript processed_transcript MGP_C3HHeJ_T0068782.1 MGP_C3HHeJ_G0028786.1 mouse_genomes_project 4 145835659 145859177 + MGP_C3HHeJ_P0068782 protein_coding protein_coding MGP_C3HHeJ_T0099325.1 MGP_C3HHeJ_G0037519.1 mouse_genomes_project 4 6433584 6433747 - Gm24152 snRNA snRNA MGP_C3HHeJ_T0007950.1 MGP_C3HHeJ_G0006486.1 mouse_genomes_project 4 157146618 157148138 + lincRNA lincRNA MGP_C3HHeJ_T0068797.1 MGP_C3HHeJ_G0028800.1 mouse_genomes_project 4 146304603 146313963 - MGP_C3HHeJ_P0068797 Gm438 protein_coding protein_coding MGP_C3HHeJ_T0007835.1 MGP_C3HHeJ_G0006401.1 mouse_genomes_project 4 106918803 106924974 - Gm12746 lincRNA lincRNA MGP_C3HHeJ_T0014540.1 MGP_C3HHeJ_G0012644.1 mouse_genomes_project 4 111495857 111496856 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069097.1 MGP_C3HHeJ_G0028864.1 mouse_genomes_project 4 153194968 153205622 - MGP_C3HHeJ_P0069097 Vamp3 protein_coding protein_coding MGP_C3HHeJ_T0069098.1 MGP_C3HHeJ_G0028864.1 mouse_genomes_project 4 153198077 153205615 - Vamp3 protein_coding retained_intron MGP_C3HHeJ_T0069099.1 MGP_C3HHeJ_G0028864.1 mouse_genomes_project 4 153203581 153205632 - Vamp3 protein_coding retained_intron MGP_C3HHeJ_T0014573.1 MGP_C3HHeJ_G0012677.1 mouse_genomes_project 4 120103093 120103496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014345.1 MGP_C3HHeJ_G0012449.1 mouse_genomes_project 4 35751777 35752206 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068280.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691657 136696094 + MGP_C3HHeJ_P0068280 Gale protein_coding protein_coding MGP_C3HHeJ_T0068281.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691687 136693560 + MGP_C3HHeJ_P0068281 Gale protein_coding protein_coding MGP_C3HHeJ_T0068282.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691690 136694796 + Gale protein_coding retained_intron MGP_C3HHeJ_T0068283.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136691747 136693550 + MGP_C3HHeJ_P0068283 Gale protein_coding protein_coding MGP_C3HHeJ_T0068284.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136693095 136696094 + MGP_C3HHeJ_P0068284 Gale protein_coding protein_coding MGP_C3HHeJ_T0068285.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136693125 136694850 + Gale protein_coding retained_intron MGP_C3HHeJ_T0068286.1 MGP_C3HHeJ_G0028652.1 mouse_genomes_project 4 136693549 136695619 + Gale protein_coding retained_intron MGP_C3HHeJ_T0014554.1 MGP_C3HHeJ_G0012658.1 mouse_genomes_project 4 117291606 117292053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014407.1 MGP_C3HHeJ_G0012511.1 mouse_genomes_project 4 58130553 58131273 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065095.1 MGP_C3HHeJ_G0027926.1 mouse_genomes_project 4 42047077 42050834 + MGP_C3HHeJ_P0065095 Olfr155 protein_coding protein_coding MGP_C3HHeJ_T0065096.1 MGP_C3HHeJ_G0027926.1 mouse_genomes_project 4 42049855 42051027 + MGP_C3HHeJ_P0065096 Olfr155 protein_coding protein_coding MGP_C3HHeJ_T0004463.1 MGP_C3HHeJ_G0003874.1 mouse_genomes_project 4 128301654 128333915 - Csmd2os antisense antisense MGP_C3HHeJ_T0004464.1 MGP_C3HHeJ_G0003874.1 mouse_genomes_project 4 128301654 128337148 - Csmd2os antisense antisense MGP_C3HHeJ_T0014431.1 MGP_C3HHeJ_G0012535.1 mouse_genomes_project 4 72155726 72161893 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017895.1 MGP_C3HHeJ_G0015349.1 mouse_genomes_project 4 158406656 158413763 - Gm13648 processed_transcript processed_transcript MGP_C3HHeJ_T0014387.1 MGP_C3HHeJ_G0012491.1 mouse_genomes_project 4 51863015 51863462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014537.1 MGP_C3HHeJ_G0012641.1 mouse_genomes_project 4 109829917 109831061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007717.1 MGP_C3HHeJ_G0006301.1 mouse_genomes_project 4 7885548 7889738 + Gm11827 lincRNA lincRNA MGP_C3HHeJ_T0007718.1 MGP_C3HHeJ_G0006301.1 mouse_genomes_project 4 7886697 7889738 + Gm11827 lincRNA lincRNA MGP_C3HHeJ_T0068594.1 MGP_C3HHeJ_G0028727.1 mouse_genomes_project 4 141894009 141920727 - MGP_C3HHeJ_P0068594 Padi3 protein_coding protein_coding MGP_C3HHeJ_T0068595.1 MGP_C3HHeJ_G0028727.1 mouse_genomes_project 4 141894013 141914130 - MGP_C3HHeJ_P0068595 Padi3 protein_coding protein_coding MGP_C3HHeJ_T0065187.1 MGP_C3HHeJ_G0027940.1 mouse_genomes_project 4 43459781 43541384 + MGP_C3HHeJ_P0065187 Frmpd1 protein_coding protein_coding MGP_C3HHeJ_T0065188.1 MGP_C3HHeJ_G0027940.1 mouse_genomes_project 4 43459812 43566086 + MGP_C3HHeJ_P0065188 Frmpd1 protein_coding protein_coding MGP_C3HHeJ_T0065189.1 MGP_C3HHeJ_G0027940.1 mouse_genomes_project 4 43479976 43566086 + MGP_C3HHeJ_P0065189 Frmpd1 protein_coding protein_coding MGP_C3HHeJ_T0065205.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43681343 43693219 - MGP_C3HHeJ_P0065205 Slc25a51 protein_coding protein_coding MGP_C3HHeJ_T0065206.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43681674 43693105 - MGP_C3HHeJ_P0065206 Slc25a51 protein_coding protein_coding MGP_C3HHeJ_T0065207.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43681704 43688110 - MGP_C3HHeJ_P0065207 Slc25a51 protein_coding protein_coding MGP_C3HHeJ_T0065208.1 MGP_C3HHeJ_G0027944.1 mouse_genomes_project 4 43690345 43693194 - Slc25a51 protein_coding processed_transcript MGP_C3HHeJ_T0014363.1 MGP_C3HHeJ_G0012467.1 mouse_genomes_project 4 43410283 43410642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067149.1 MGP_C3HHeJ_G0028396.1 mouse_genomes_project 4 119956983 119961468 - Ppcs protein_coding retained_intron MGP_C3HHeJ_T0067150.1 MGP_C3HHeJ_G0028396.1 mouse_genomes_project 4 119956983 119961530 - MGP_C3HHeJ_P0067150 Ppcs protein_coding protein_coding MGP_C3HHeJ_T0067151.1 MGP_C3HHeJ_G0028396.1 mouse_genomes_project 4 119956983 119961486 - MGP_C3HHeJ_P0067151 Ppcs protein_coding protein_coding MGP_C3HHeJ_T0014389.1 MGP_C3HHeJ_G0012493.1 mouse_genomes_project 4 52352309 52352696 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068000.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133769731 133781679 - MGP_C3HHeJ_P0068000 Tmem222 protein_coding protein_coding MGP_C3HHeJ_T0068001.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770516 133781549 - MGP_C3HHeJ_P0068001 Tmem222 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068002.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770562 133781657 - MGP_C3HHeJ_P0068002 Tmem222 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068003.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770573 133781505 - MGP_C3HHeJ_P0068003 Tmem222 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068004.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133770588 133773793 - Tmem222 protein_coding retained_intron MGP_C3HHeJ_T0068005.1 MGP_C3HHeJ_G0028587.1 mouse_genomes_project 4 133774568 133781638 - Tmem222 protein_coding retained_intron MGP_C3HHeJ_T0067987.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133710865 133720904 + Cd164l2 protein_coding processed_transcript MGP_C3HHeJ_T0067988.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133711639 133723674 + MGP_C3HHeJ_P0067988 Cd164l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067989.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133719944 133723673 + MGP_C3HHeJ_P0067989 Cd164l2 protein_coding protein_coding MGP_C3HHeJ_T0067990.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133720581 133723673 + Cd164l2 protein_coding processed_transcript MGP_C3HHeJ_T0067991.1 MGP_C3HHeJ_G0028584.1 mouse_genomes_project 4 133720667 133723360 + Cd164l2 protein_coding retained_intron MGP_C3HHeJ_T0099340.1 MGP_C3HHeJ_G0037534.1 mouse_genomes_project 4 37883683 37883745 - Gm26087 snRNA snRNA MGP_C3HHeJ_T0010513.1 MGP_C3HHeJ_G0008646.1 mouse_genomes_project 4 76139884 76139961 - Gm23159 miRNA miRNA MGP_C3HHeJ_T0065502.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57228936 - MGP_C3HHeJ_P0065502 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065503.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57229132 - MGP_C3HHeJ_P0065503 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065504.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57228890 - MGP_C3HHeJ_P0065504 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065505.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57229207 - MGP_C3HHeJ_P0065505 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065506.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57100897 57172244 - MGP_C3HHeJ_P0065506 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065507.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57158863 57223989 - MGP_C3HHeJ_P0065507 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065508.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57158918 57229477 - MGP_C3HHeJ_P0065508 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0065509.1 MGP_C3HHeJ_G0028026.1 mouse_genomes_project 4 57158952 57228763 - MGP_C3HHeJ_P0065509 Lpar1 protein_coding protein_coding MGP_C3HHeJ_T0068029.1 MGP_C3HHeJ_G0028596.1 mouse_genomes_project 4 134119746 134128639 + MGP_C3HHeJ_P0068029 Gpn2 protein_coding protein_coding MGP_C3HHeJ_T0068030.1 MGP_C3HHeJ_G0028596.1 mouse_genomes_project 4 134119803 134128389 + MGP_C3HHeJ_P0068030 Gpn2 protein_coding protein_coding MGP_C3HHeJ_T0068031.1 MGP_C3HHeJ_G0028596.1 mouse_genomes_project 4 134119812 134123048 + Gpn2 protein_coding processed_transcript MGP_C3HHeJ_T0068568.1 MGP_C3HHeJ_G0028721.1 mouse_genomes_project 4 141010982 141020133 - MGP_C3HHeJ_P0068568 Klhdc7a protein_coding protein_coding MGP_C3HHeJ_T0067053.1 MGP_C3HHeJ_G0028366.1 mouse_genomes_project 4 118976631 118995145 - MGP_C3HHeJ_P0067053 Tie1 protein_coding protein_coding MGP_C3HHeJ_T0067054.1 MGP_C3HHeJ_G0028366.1 mouse_genomes_project 4 118976631 118995451 - MGP_C3HHeJ_P0067054 Tie1 protein_coding protein_coding MGP_C3HHeJ_T0067055.1 MGP_C3HHeJ_G0028366.1 mouse_genomes_project 4 118983469 118995183 - Tie1 protein_coding processed_transcript MGP_C3HHeJ_T0004515.1 MGP_C3HHeJ_G0003914.1 mouse_genomes_project 4 150946527 150947950 - Gm13205 antisense antisense MGP_C3HHeJ_T0065267.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44830636 44867339 - MGP_C3HHeJ_P0065267 Trim14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065268.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44831674 44865631 - Trim14 protein_coding processed_transcript MGP_C3HHeJ_T0065269.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44844243 44867358 - MGP_C3HHeJ_P0065269 Trim14 protein_coding protein_coding MGP_C3HHeJ_T0065270.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44844784 44865659 - Trim14 protein_coding processed_transcript MGP_C3HHeJ_T0065271.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44847041 44867331 - MGP_C3HHeJ_P0065271 Trim14 protein_coding protein_coding MGP_C3HHeJ_T0065272.1 MGP_C3HHeJ_G0027960.1 mouse_genomes_project 4 44854409 44865821 - Trim14 protein_coding processed_transcript MGP_C3HHeJ_T0068414.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138627576 138689450 - MGP_C3HHeJ_P0068414 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068415.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138632290 138633018 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0068416.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138638406 138655830 - MGP_C3HHeJ_P0068416 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068417.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138642892 138675290 - MGP_C3HHeJ_P0068417 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068418.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138644105 138678466 - MGP_C3HHeJ_P0068418 Alpl protein_coding protein_coding MGP_C3HHeJ_T0068419.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138644649 138689296 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0068420.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138647686 138659264 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0068421.1 MGP_C3HHeJ_G0028684.1 mouse_genomes_project 4 138647686 138659059 - Alpl protein_coding processed_transcript MGP_C3HHeJ_T0014587.1 MGP_C3HHeJ_G0012691.1 mouse_genomes_project 4 123576128 123576537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010534.1 MGP_C3HHeJ_G0008667.1 mouse_genomes_project 4 123562371 123562473 + Mir6398 miRNA miRNA MGP_C3HHeJ_T0068153.1 MGP_C3HHeJ_G0028622.1 mouse_genomes_project 4 134947240 134968358 - MGP_C3HHeJ_P0068153 Extl1 protein_coding protein_coding MGP_C3HHeJ_T0068154.1 MGP_C3HHeJ_G0028622.1 mouse_genomes_project 4 134956356 134980531 - Extl1 protein_coding processed_transcript MGP_C3HHeJ_T0068155.1 MGP_C3HHeJ_G0028622.1 mouse_genomes_project 4 134958492 134961204 - Extl1 protein_coding processed_transcript MGP_C3HHeJ_T0007821.1 MGP_C3HHeJ_G0006391.1 mouse_genomes_project 4 101211095 101239766 - Gm12796 lincRNA lincRNA MGP_C3HHeJ_T0007757.1 MGP_C3HHeJ_G0006338.1 mouse_genomes_project 4 47328618 47395992 + lincRNA lincRNA MGP_C3HHeJ_T0069289.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156454843 156564369 + MGP_C3HHeJ_P0069289 Megf6 protein_coding protein_coding MGP_C3HHeJ_T0069290.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156525160 156560395 + MGP_C3HHeJ_P0069290 Megf6 protein_coding protein_coding MGP_C3HHeJ_T0069291.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156537046 156539969 + Megf6 protein_coding retained_intron MGP_C3HHeJ_T0069292.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156553273 156563840 + Megf6 protein_coding processed_transcript MGP_C3HHeJ_T0069293.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156554829 156559189 + MGP_C3HHeJ_P0069293 Megf6 protein_coding protein_coding MGP_C3HHeJ_T0069294.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156558444 156562784 + Megf6 protein_coding retained_intron MGP_C3HHeJ_T0069295.1 MGP_C3HHeJ_G0028896.1 mouse_genomes_project 4 156558539 156559695 + Megf6 protein_coding retained_intron MGP_C3HHeJ_T0010554.1 MGP_C3HHeJ_G0008687.1 mouse_genomes_project 4 137993454 137993524 + Gm25399 miRNA miRNA MGP_C3HHeJ_T0017843.1 MGP_C3HHeJ_G0015320.1 mouse_genomes_project 4 95226424 95249395 - Gm830 processed_transcript processed_transcript MGP_C3HHeJ_T0014298.1 MGP_C3HHeJ_G0012402.1 mouse_genomes_project 4 22550293 22550620 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011721.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865958 118868727 + MGP_C3HHeJ_P0011721 Hyi polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011722.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865967 118867287 + Hyi polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0011723.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865967 118868727 + MGP_C3HHeJ_P0011723 Hyi polymorphic_pseudogene nonsense_mediated_decay MGP_C3HHeJ_T0011724.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118865982 118868727 + MGP_C3HHeJ_P0011724 Hyi polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011725.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118867304 118868478 + Hyi polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0067028.1 MGP_C3HHeJ_G0009842.1 mouse_genomes_project 4 118866001 118868734 + MGP_C3HHeJ_P0067028 Hyi polymorphic_pseudogene unknown_likely_coding MGP_C3HHeJ_T0102025.1 MGP_C3HHeJ_G0039990.1 mouse_genomes_project 4 145309689 145321178 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0068773.1 MGP_C3HHeJ_G0028781.1 mouse_genomes_project 4 145606950 145613255 - MGP_C3HHeJ_P0068773 Oog1 protein_coding protein_coding MGP_C3HHeJ_T0007713.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7219312 7466508 - lincRNA lincRNA MGP_C3HHeJ_T0007714.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7238673 7531572 - lincRNA lincRNA MGP_C3HHeJ_T0007715.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7469333 7531556 - lincRNA lincRNA MGP_C3HHeJ_T0007716.1 MGP_C3HHeJ_G0006300.1 mouse_genomes_project 4 7469609 7531559 - lincRNA lincRNA MGP_C3HHeJ_T0001395.1 MGP_C3HHeJ_G0001325.1 mouse_genomes_project 4 152132611 152135023 + TEC TEC MGP_C3HHeJ_T0014283.1 MGP_C3HHeJ_G0012387.1 mouse_genomes_project 4 18673272 18674071 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014355.1 MGP_C3HHeJ_G0012459.1 mouse_genomes_project 4 38591734 38592181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004416.1 MGP_C3HHeJ_G0003837.1 mouse_genomes_project 4 102975212 102997509 - Gm12709 antisense antisense MGP_C3HHeJ_T0100616.1 MGP_C3HHeJ_G0038810.1 mouse_genomes_project 4 39160388 39160465 - Gm22888 snoRNA snoRNA MGP_C3HHeJ_T0066244.1 MGP_C3HHeJ_G0028204.1 mouse_genomes_project 4 103317185 103369191 + MGP_C3HHeJ_P0066244 Oma1 protein_coding protein_coding MGP_C3HHeJ_T0066245.1 MGP_C3HHeJ_G0028204.1 mouse_genomes_project 4 103327728 103333114 + Oma1 protein_coding processed_transcript MGP_C3HHeJ_T0066246.1 MGP_C3HHeJ_G0028204.1 mouse_genomes_project 4 103333132 103374615 + Oma1 protein_coding processed_transcript MGP_C3HHeJ_T0017861.1 MGP_C3HHeJ_G0015333.1 mouse_genomes_project 4 119752729 119754368 + Gm12898 processed_transcript processed_transcript MGP_C3HHeJ_T0066295.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752690 106799378 - MGP_C3HHeJ_P0066295 Mroh7 protein_coding protein_coding MGP_C3HHeJ_T0066296.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752697 106780589 - Mroh7 protein_coding processed_transcript MGP_C3HHeJ_T0066297.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752697 106779105 - Mroh7 protein_coding retained_intron MGP_C3HHeJ_T0066298.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106752910 106780272 - Mroh7 protein_coding processed_transcript MGP_C3HHeJ_T0066299.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106763101 106770548 - Mroh7 protein_coding processed_transcript MGP_C3HHeJ_T0066300.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106779046 106799424 - MGP_C3HHeJ_P0066300 Mroh7 protein_coding protein_coding MGP_C3HHeJ_T0066301.1 MGP_C3HHeJ_G0028221.1 mouse_genomes_project 4 106792781 106802366 - MGP_C3HHeJ_P0066301 Mroh7 protein_coding protein_coding MGP_C3HHeJ_T0014376.1 MGP_C3HHeJ_G0012480.1 mouse_genomes_project 4 48235589 48236105 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017800.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501189 6555060 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017801.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501189 6553600 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017802.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501255 6507560 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017803.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501283 6512484 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017804.1 MGP_C3HHeJ_G0015294.1 mouse_genomes_project 4 6501401 6551935 + 4930412C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0068063.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524849 134565378 - MGP_C3HHeJ_P0068063 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068064.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524878 134565375 - MGP_C3HHeJ_P0068064 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068065.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524879 134539245 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0068066.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524884 134564881 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0068067.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134524996 134565359 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0068068.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526013 134565359 - MGP_C3HHeJ_P0068068 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068069.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526741 134558210 - MGP_C3HHeJ_P0068069 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068070.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526769 134564881 - MGP_C3HHeJ_P0068070 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068071.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134526801 134564881 - MGP_C3HHeJ_P0068071 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068072.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134527063 134565406 - MGP_C3HHeJ_P0068072 Dhdds protein_coding protein_coding MGP_C3HHeJ_T0068073.1 MGP_C3HHeJ_G0028603.1 mouse_genomes_project 4 134538827 134561616 - Dhdds protein_coding processed_transcript MGP_C3HHeJ_T0007807.1 MGP_C3HHeJ_G0006378.1 mouse_genomes_project 4 91389943 91394775 + Gm12670 lincRNA lincRNA MGP_C3HHeJ_T0065432.1 MGP_C3HHeJ_G0028009.1 mouse_genomes_project 4 55362185 55363493 + MGP_C3HHeJ_P0065432 Gm26657 protein_coding protein_coding MGP_C3HHeJ_T0007949.1 MGP_C3HHeJ_G0006485.1 mouse_genomes_project 4 156951355 156951974 - Gm27202 lincRNA lincRNA MGP_C3HHeJ_T0014593.1 MGP_C3HHeJ_G0012697.1 mouse_genomes_project 4 126607387 126607806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067949.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133239817 133249400 + Rpa2 protein_coding processed_transcript MGP_C3HHeJ_T0067950.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133239820 133251434 + MGP_C3HHeJ_P0067950 Rpa2 protein_coding protein_coding MGP_C3HHeJ_T0067951.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133239861 133246925 + Rpa2 protein_coding retained_intron MGP_C3HHeJ_T0067952.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133240120 133244809 + Rpa2 protein_coding retained_intron MGP_C3HHeJ_T0067953.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133243205 133244997 + Rpa2 protein_coding retained_intron MGP_C3HHeJ_T0067954.1 MGP_C3HHeJ_G0028575.1 mouse_genomes_project 4 133247817 133249844 + MGP_C3HHeJ_P0067954 Rpa2 protein_coding protein_coding MGP_C3HHeJ_T0067916.1 MGP_C3HHeJ_G0028568.1 mouse_genomes_project 4 132948805 132968568 - MGP_C3HHeJ_P0067916 Sesn2 protein_coding protein_coding MGP_C3HHeJ_T0014442.1 MGP_C3HHeJ_G0012546.1 mouse_genomes_project 4 75007272 75008101 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101987.1 MGP_C3HHeJ_G0039952.1 mouse_genomes_project 4 58743930 60690084 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014364.1 MGP_C3HHeJ_G0012468.1 mouse_genomes_project 4 43614162 43614456 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004388.1 MGP_C3HHeJ_G0003819.1 mouse_genomes_project 4 61008272 61015474 + Gm12910 antisense antisense MGP_C3HHeJ_T0007827.1 MGP_C3HHeJ_G0006395.1 mouse_genomes_project 4 103224542 103226408 + Gm44037 lincRNA lincRNA MGP_C3HHeJ_T0068790.1 MGP_C3HHeJ_G0028793.1 mouse_genomes_project 4 145971315 145971624 - MGP_C3HHeJ_P0068790 Gm9944 protein_coding protein_coding MGP_C3HHeJ_T0066495.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108735747 108751584 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0066496.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108735758 108751725 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0066497.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108735778 108774470 + MGP_C3HHeJ_P0066497 Orc1 protein_coding protein_coding MGP_C3HHeJ_T0066498.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108742915 108743706 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0066499.1 MGP_C3HHeJ_G0028253.1 mouse_genomes_project 4 108760823 108762776 + Orc1 protein_coding processed_transcript MGP_C3HHeJ_T0014415.1 MGP_C3HHeJ_G0012519.1 mouse_genomes_project 4 63991590 63991948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014548.1 MGP_C3HHeJ_G0012652.1 mouse_genomes_project 4 115778132 115778609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004544.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094546 158104653 + Atad3aos antisense antisense MGP_C3HHeJ_T0004545.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094560 158095710 + Atad3aos antisense antisense MGP_C3HHeJ_T0004546.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094578 158096999 + Atad3aos antisense antisense MGP_C3HHeJ_T0004547.1 MGP_C3HHeJ_G0003936.1 mouse_genomes_project 4 158094589 158097010 + Atad3aos antisense antisense MGP_C3HHeJ_T0004478.1 MGP_C3HHeJ_G0003885.1 mouse_genomes_project 4 135043157 135054554 - antisense antisense MGP_C3HHeJ_T0099342.1 MGP_C3HHeJ_G0037536.1 mouse_genomes_project 4 39128710 39128813 - Gm24650 snRNA snRNA MGP_C3HHeJ_T0065209.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43707989 43769333 - Shb protein_coding processed_transcript MGP_C3HHeJ_T0065210.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43707989 43819039 - MGP_C3HHeJ_P0065210 Shb protein_coding protein_coding MGP_C3HHeJ_T0065211.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43729425 43779386 - Shb protein_coding processed_transcript MGP_C3HHeJ_T0065212.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43732221 43775945 - Shb protein_coding retained_intron MGP_C3HHeJ_T0065213.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43742897 43776337 - MGP_C3HHeJ_P0065213 Shb protein_coding protein_coding MGP_C3HHeJ_T0065214.1 MGP_C3HHeJ_G0027945.1 mouse_genomes_project 4 43743088 43821179 - MGP_C3HHeJ_P0065214 Shb protein_coding protein_coding MGP_C3HHeJ_T0068313.1 MGP_C3HHeJ_G0028658.1 mouse_genomes_project 4 136921862 136945522 + MGP_C3HHeJ_P0068313 E2f2 protein_coding protein_coding MGP_C3HHeJ_T0068314.1 MGP_C3HHeJ_G0028658.1 mouse_genomes_project 4 136930251 136936272 + E2f2 protein_coding processed_transcript MGP_C3HHeJ_T0069128.1 MGP_C3HHeJ_G0028869.1 mouse_genomes_project 4 154185973 154194759 + MGP_C3HHeJ_P0069128 Klhl21 protein_coding protein_coding MGP_C3HHeJ_T0064450.1 MGP_C3HHeJ_G0027784.1 mouse_genomes_project 4 16888359 16941469 - MGP_C3HHeJ_P0064450 Atp6v0d2 protein_coding protein_coding MGP_C3HHeJ_T0064451.1 MGP_C3HHeJ_G0027784.1 mouse_genomes_project 4 16902365 16935803 - MGP_C3HHeJ_P0064451 Atp6v0d2 protein_coding protein_coding MGP_C3HHeJ_T0068751.1 MGP_C3HHeJ_G0028766.1 mouse_genomes_project 4 144654517 144660248 + MGP_C3HHeJ_P0068751 Pramel1 protein_coding protein_coding MGP_C3HHeJ_T0067029.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118868725 118915332 - MGP_C3HHeJ_P0067029 Szt2 protein_coding protein_coding MGP_C3HHeJ_T0067030.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118868729 118880011 - MGP_C3HHeJ_P0067030 Szt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067031.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118869391 118871033 - Szt2 protein_coding processed_transcript MGP_C3HHeJ_T0067032.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118874700 118875580 - Szt2 protein_coding retained_intron MGP_C3HHeJ_T0067033.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118878409 118879562 - Szt2 protein_coding retained_intron MGP_C3HHeJ_T0067034.1 MGP_C3HHeJ_G0028361.1 mouse_genomes_project 4 118895062 118895866 - Szt2 protein_coding processed_transcript MGP_C3HHeJ_T0004549.1 MGP_C3HHeJ_G0003938.1 mouse_genomes_project 4 158375749 158377567 - Gm16008 antisense antisense MGP_C3HHeJ_T0004550.1 MGP_C3HHeJ_G0003938.1 mouse_genomes_project 4 158377469 158385134 - Gm16008 antisense antisense MGP_C3HHeJ_T0004551.1 MGP_C3HHeJ_G0003938.1 mouse_genomes_project 4 158379806 158385113 - Gm16008 antisense antisense MGP_C3HHeJ_T0068818.1 MGP_C3HHeJ_G0028806.1 mouse_genomes_project 4 149486541 149487844 + MGP_C3HHeJ_P0068818 protein_coding protein_coding MGP_C3HHeJ_T0065980.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94496220 94625842 + MGP_C3HHeJ_P0065980 Tek protein_coding protein_coding MGP_C3HHeJ_T0065981.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94496231 94625805 + MGP_C3HHeJ_P0065981 Tek protein_coding protein_coding MGP_C3HHeJ_T0065982.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94496449 94625548 + MGP_C3HHeJ_P0065982 Tek protein_coding protein_coding MGP_C3HHeJ_T0065983.1 MGP_C3HHeJ_G0028147.1 mouse_genomes_project 4 94563335 94572612 + Tek protein_coding processed_transcript MGP_C3HHeJ_T0005550.1 MGP_C3HHeJ_G0004667.1 mouse_genomes_project 4 107909647 107920002 - Lrp8os3 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0011490.1 MGP_C3HHeJ_G0009623.1 mouse_genomes_project 4 144597212 144597520 + Gm26313 misc_RNA misc_RNA MGP_C3HHeJ_T0014224.1 MGP_C3HHeJ_G0012328.1 mouse_genomes_project 4 641898 642398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100622.1 MGP_C3HHeJ_G0038816.1 mouse_genomes_project 4 46300432 46300575 + Gm22670 snoRNA snoRNA MGP_C3HHeJ_T0069387.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157576216 157677432 - MGP_C3HHeJ_P0069387 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069388.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157576595 157582831 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069389.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157576939 157677269 - MGP_C3HHeJ_P0069389 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069390.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157585628 157587538 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069391.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157605980 157660436 - MGP_C3HHeJ_P0069391 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069392.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157605980 157660219 - MGP_C3HHeJ_P0069392 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0069393.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157605983 157660316 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069394.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157609576 157616485 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069395.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157609651 157659794 - Prkcz protein_coding processed_transcript MGP_C3HHeJ_T0069396.1 MGP_C3HHeJ_G0028913.1 mouse_genomes_project 4 157671432 157677411 - MGP_C3HHeJ_P0069396 Prkcz protein_coding protein_coding MGP_C3HHeJ_T0099410.1 MGP_C3HHeJ_G0037604.1 mouse_genomes_project 4 151555320 151555424 - Gm24381 snRNA snRNA MGP_C3HHeJ_T0014295.1 MGP_C3HHeJ_G0012399.1 mouse_genomes_project 4 21534278 21535994 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014299.1 MGP_C3HHeJ_G0012403.1 mouse_genomes_project 4 22682072 22682892 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069181.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154468126 154480148 + MGP_C3HHeJ_P0069181 Gpr153 protein_coding protein_coding MGP_C3HHeJ_T0069182.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154468256 154480148 + MGP_C3HHeJ_P0069182 Gpr153 protein_coding protein_coding MGP_C3HHeJ_T0069183.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154473823 154480148 + MGP_C3HHeJ_P0069183 Gpr153 protein_coding protein_coding MGP_C3HHeJ_T0069184.1 MGP_C3HHeJ_G0028878.1 mouse_genomes_project 4 154477180 154480147 + Gpr153 protein_coding processed_transcript MGP_C3HHeJ_T0068215.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135990674 136030321 - MGP_C3HHeJ_P0068215 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068216.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135990681 136030244 - MGP_C3HHeJ_P0068216 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068217.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135991284 136030244 - MGP_C3HHeJ_P0068217 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068218.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135992223 136030136 - MGP_C3HHeJ_P0068218 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068219.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135992480 135997426 - MGP_C3HHeJ_P0068219 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068220.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135992666 136030134 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068221.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135993958 135995040 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068222.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 135999371 136002436 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068223.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136001680 136011992 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068224.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136002360 136016385 - MGP_C3HHeJ_P0068224 Srrm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068225.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136012187 136016441 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068226.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136016333 136030142 - MGP_C3HHeJ_P0068226 Srrm1 protein_coding protein_coding MGP_C3HHeJ_T0068227.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136017559 136030151 - Srrm1 protein_coding retained_intron MGP_C3HHeJ_T0068228.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136018450 136021127 - MGP_C3HHeJ_P0068228 Srrm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068229.1 MGP_C3HHeJ_G0028638.1 mouse_genomes_project 4 136019614 136030202 - Srrm1 protein_coding processed_transcript MGP_C3HHeJ_T0014614.1 MGP_C3HHeJ_G0012718.1 mouse_genomes_project 4 134427502 134427685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100618.1 MGP_C3HHeJ_G0038812.1 mouse_genomes_project 4 39171108 39171186 - Gm23090 snoRNA snoRNA MGP_C3HHeJ_T0014604.1 MGP_C3HHeJ_G0012708.1 mouse_genomes_project 4 130030418 130030706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066236.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103177144 103222005 - MGP_C3HHeJ_P0066236 Slc35d1 protein_coding protein_coding MGP_C3HHeJ_T0066237.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103177151 103221644 - MGP_C3HHeJ_P0066237 Slc35d1 protein_coding protein_coding MGP_C3HHeJ_T0066238.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103207671 103221644 - MGP_C3HHeJ_P0066238 Slc35d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066239.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103217174 103221640 - Slc35d1 protein_coding retained_intron MGP_C3HHeJ_T0066240.1 MGP_C3HHeJ_G0028202.1 mouse_genomes_project 4 103217395 103221513 - Slc35d1 protein_coding retained_intron MGP_C3HHeJ_T0014225.1 MGP_C3HHeJ_G0012329.1 mouse_genomes_project 4 1206061 1206577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064630.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158953 32204611 + MGP_C3HHeJ_P0064630 Rars2 protein_coding protein_coding MGP_C3HHeJ_T0064631.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158957 32162902 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064632.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158965 32169461 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064633.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158970 32204607 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064634.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158972 32174690 + MGP_C3HHeJ_P0064634 Rars2 protein_coding protein_coding MGP_C3HHeJ_T0064635.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32158974 32167453 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0064636.1 MGP_C3HHeJ_G0027826.1 mouse_genomes_project 4 32192003 32200554 + Rars2 protein_coding processed_transcript MGP_C3HHeJ_T0065238.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44425343 44451656 - MGP_C3HHeJ_P0065238 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065239.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44426283 44451619 - MGP_C3HHeJ_P0065239 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065240.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44433960 44451594 - Tstd2 protein_coding retained_intron MGP_C3HHeJ_T0065241.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44440331 44444607 - Tstd2 protein_coding retained_intron MGP_C3HHeJ_T0065242.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44444617 44451875 - MGP_C3HHeJ_P0065242 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065243.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44444680 44451590 - MGP_C3HHeJ_P0065243 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065244.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44444829 44448964 - MGP_C3HHeJ_P0065244 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0065245.1 MGP_C3HHeJ_G0027952.1 mouse_genomes_project 4 44448687 44451636 - MGP_C3HHeJ_P0065245 Tstd2 protein_coding protein_coding MGP_C3HHeJ_T0068018.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040161 134049961 + MGP_C3HHeJ_P0068018 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068019.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040190 134051829 + MGP_C3HHeJ_P0068019 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068020.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040221 134049684 + MGP_C3HHeJ_P0068020 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068021.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040253 134051824 + MGP_C3HHeJ_P0068021 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0068022.1 MGP_C3HHeJ_G0028592.1 mouse_genomes_project 4 134040281 134051826 + MGP_C3HHeJ_P0068022 Kdf1 protein_coding protein_coding MGP_C3HHeJ_T0064395.1 MGP_C3HHeJ_G0027763.1 mouse_genomes_project 4 9757888 9826431 + MGP_C3HHeJ_P0064395 Triqk protein_coding protein_coding MGP_C3HHeJ_T0064396.1 MGP_C3HHeJ_G0027763.1 mouse_genomes_project 4 9757908 9829098 + MGP_C3HHeJ_P0064396 Triqk protein_coding protein_coding MGP_C3HHeJ_T0064397.1 MGP_C3HHeJ_G0027763.1 mouse_genomes_project 4 9769017 9826628 + Triqk protein_coding processed_transcript MGP_C3HHeJ_T0014255.1 MGP_C3HHeJ_G0012359.1 mouse_genomes_project 4 11689989 11690866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007729.1 MGP_C3HHeJ_G0006311.1 mouse_genomes_project 4 19577855 19582484 + lincRNA lincRNA MGP_C3HHeJ_T0010571.1 MGP_C3HHeJ_G0008704.1 mouse_genomes_project 4 158407845 158407928 - Mir429 miRNA miRNA MGP_C3HHeJ_T0007907.1 MGP_C3HHeJ_G0006447.1 mouse_genomes_project 4 132789086 132790699 + Gm17300 lincRNA lincRNA MGP_C3HHeJ_T0014480.1 MGP_C3HHeJ_G0012584.1 mouse_genomes_project 4 90904845 90905451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066137.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100689793 100921367 + MGP_C3HHeJ_P0066137 Cachd1 protein_coding protein_coding MGP_C3HHeJ_T0066138.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100689793 100939982 + MGP_C3HHeJ_P0066138 Cachd1 protein_coding protein_coding MGP_C3HHeJ_T0066139.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100911396 100919876 + Cachd1 protein_coding processed_transcript MGP_C3HHeJ_T0066140.1 MGP_C3HHeJ_G0028182.1 mouse_genomes_project 4 100911495 100920046 + Cachd1 protein_coding processed_transcript MGP_C3HHeJ_T0067673.1 MGP_C3HHeJ_G0028525.1 mouse_genomes_project 4 129827859 129828502 - Fam167b protein_coding processed_transcript MGP_C3HHeJ_T0067674.1 MGP_C3HHeJ_G0028525.1 mouse_genomes_project 4 129827859 129829594 - MGP_C3HHeJ_P0067674 Fam167b protein_coding protein_coding MGP_C3HHeJ_T0064864.1 MGP_C3HHeJ_G0027884.1 mouse_genomes_project 4 40344389 40345519 + MGP_C3HHeJ_P0064864 protein_coding protein_coding MGP_C3HHeJ_T0068913.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599850 - MGP_C3HHeJ_P0068913 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068914.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599827 - MGP_C3HHeJ_P0068914 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068915.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599827 - MGP_C3HHeJ_P0068915 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068916.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583313 150599827 - MGP_C3HHeJ_P0068916 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068917.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583318 150599593 - MGP_C3HHeJ_P0068917 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068918.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583319 150587057 - Tardbp protein_coding processed_transcript MGP_C3HHeJ_T0068919.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583319 150590289 - MGP_C3HHeJ_P0068919 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068920.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150583416 150590798 - MGP_C3HHeJ_P0068920 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068921.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150586837 150599596 - MGP_C3HHeJ_P0068921 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068922.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587634 150593519 - MGP_C3HHeJ_P0068922 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068923.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587643 150592207 - MGP_C3HHeJ_P0068923 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068924.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587643 150599589 - MGP_C3HHeJ_P0068924 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068925.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150587644 150590872 - MGP_C3HHeJ_P0068925 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068926.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150588852 150596918 - MGP_C3HHeJ_P0068926 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068927.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150588955 150596918 - MGP_C3HHeJ_P0068927 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068928.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150588955 150596918 - MGP_C3HHeJ_P0068928 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068929.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150589009 150593626 - MGP_C3HHeJ_P0068929 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068930.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150589552 150599601 - MGP_C3HHeJ_P0068930 Tardbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068931.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150590122 150599585 - MGP_C3HHeJ_P0068931 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068932.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150592209 150599157 - MGP_C3HHeJ_P0068932 Tardbp protein_coding protein_coding MGP_C3HHeJ_T0068933.1 MGP_C3HHeJ_G0028831.1 mouse_genomes_project 4 150596640 150599589 - Tardbp protein_coding retained_intron MGP_C3HHeJ_T0068766.1 MGP_C3HHeJ_G0028776.1 mouse_genomes_project 4 145004348 145014416 + MGP_C3HHeJ_P0068766 protein_coding protein_coding MGP_C3HHeJ_T0011479.1 MGP_C3HHeJ_G0009612.1 mouse_genomes_project 4 98108951 98109065 + Gm24203 misc_RNA misc_RNA MGP_C3HHeJ_T0065215.1 MGP_C3HHeJ_G0027946.1 mouse_genomes_project 4 44097871 44104495 + MGP_C3HHeJ_P0065215 Aldh1b1 protein_coding protein_coding MGP_C3HHeJ_T0065216.1 MGP_C3HHeJ_G0027946.1 mouse_genomes_project 4 44097970 44102749 + MGP_C3HHeJ_P0065216 Aldh1b1 protein_coding protein_coding MGP_C3HHeJ_T0007879.1 MGP_C3HHeJ_G0006432.1 mouse_genomes_project 4 129482600 129485648 + Gm12976 lincRNA lincRNA MGP_C3HHeJ_T0007880.1 MGP_C3HHeJ_G0006432.1 mouse_genomes_project 4 129484393 129485648 + Gm12976 lincRNA lincRNA MGP_C3HHeJ_T0067585.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266046 129293222 + MGP_C3HHeJ_P0067585 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067586.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266046 129294431 + MGP_C3HHeJ_P0067586 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067587.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266184 129289265 + MGP_C3HHeJ_P0067587 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067588.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129266589 129293222 + MGP_C3HHeJ_P0067588 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067589.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129287686 129294582 + MGP_C3HHeJ_P0067589 Rnf19b protein_coding protein_coding MGP_C3HHeJ_T0067590.1 MGP_C3HHeJ_G0028507.1 mouse_genomes_project 4 129292580 129294582 + Rnf19b protein_coding processed_transcript MGP_C3HHeJ_T0100631.1 MGP_C3HHeJ_G0038825.1 mouse_genomes_project 4 55384085 55384205 - Gm22952 snoRNA snoRNA MGP_C3HHeJ_T0100653.1 MGP_C3HHeJ_G0038847.1 mouse_genomes_project 4 102737917 102738045 + Gm24869 snoRNA snoRNA MGP_C3HHeJ_T0069590.1 MGP_C3HHeJ_G0028953.1 mouse_genomes_project 4 158593026 158600101 - MGP_C3HHeJ_P0069590 Plekhn1 protein_coding protein_coding MGP_C3HHeJ_T0069591.1 MGP_C3HHeJ_G0028953.1 mouse_genomes_project 4 158593349 158600050 - MGP_C3HHeJ_P0069591 Plekhn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100637.1 MGP_C3HHeJ_G0038831.1 mouse_genomes_project 4 63402243 63402372 + Gm23950 snoRNA snoRNA MGP_C3HHeJ_T0067889.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743622 132763397 - MGP_C3HHeJ_P0067889 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067890.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743622 132763348 - MGP_C3HHeJ_P0067890 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067891.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743624 132763375 - Trnau1ap protein_coding retained_intron MGP_C3HHeJ_T0067892.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743708 132763353 - Trnau1ap protein_coding processed_transcript MGP_C3HHeJ_T0067893.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132743724 132763248 - MGP_C3HHeJ_P0067893 Trnau1ap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067894.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746066 132763273 - MGP_C3HHeJ_P0067894 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067895.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746172 132763363 - MGP_C3HHeJ_P0067895 Trnau1ap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067896.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746209 132763341 - Trnau1ap protein_coding processed_transcript MGP_C3HHeJ_T0067897.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132746212 132763397 - MGP_C3HHeJ_P0067897 Trnau1ap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067898.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132755059 132759135 - Trnau1ap protein_coding retained_intron MGP_C3HHeJ_T0067899.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132755537 132763397 - MGP_C3HHeJ_P0067899 Trnau1ap protein_coding protein_coding MGP_C3HHeJ_T0067900.1 MGP_C3HHeJ_G0028564.1 mouse_genomes_project 4 132761967 132763374 - Trnau1ap protein_coding retained_intron MGP_C3HHeJ_T0014564.1 MGP_C3HHeJ_G0012668.1 mouse_genomes_project 4 118996171 118996598 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069511.1 MGP_C3HHeJ_G0028936.1 mouse_genomes_project 4 158199034 158203113 - MGP_C3HHeJ_P0069511 Tas1r3 protein_coding protein_coding MGP_C3HHeJ_T0007741.1 MGP_C3HHeJ_G0006323.1 mouse_genomes_project 4 34918334 35010551 + Gm12374 lincRNA lincRNA MGP_C3HHeJ_T0004504.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143270196 143274244 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0004505.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143270522 143274300 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0004506.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143270564 143274237 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0004507.1 MGP_C3HHeJ_G0003907.1 mouse_genomes_project 4 143271080 143274278 + Tmem51os1 antisense antisense MGP_C3HHeJ_T0068869.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088802 150095224 - MGP_C3HHeJ_P0068869 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068870.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088802 150094998 - MGP_C3HHeJ_P0068870 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068871.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088873 150095003 - MGP_C3HHeJ_P0068871 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068872.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150088874 150095148 - MGP_C3HHeJ_P0068872 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068873.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150089095 150095229 - MGP_C3HHeJ_P0068873 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068874.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150089178 150092820 - MGP_C3HHeJ_P0068874 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068875.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150089204 150095015 - MGP_C3HHeJ_P0068875 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0068876.1 MGP_C3HHeJ_G0028821.1 mouse_genomes_project 4 150092544 150094736 - MGP_C3HHeJ_P0068876 Fbxo6 protein_coding protein_coding MGP_C3HHeJ_T0007864.1 MGP_C3HHeJ_G0006422.1 mouse_genomes_project 4 125256066 125269199 + 1700041M05Rik lincRNA lincRNA MGP_C3HHeJ_T0014495.1 MGP_C3HHeJ_G0012599.1 mouse_genomes_project 4 97970074 97970530 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064440.1 MGP_C3HHeJ_G0027778.1 mouse_genomes_project 4 16286311 16526580 + MGP_C3HHeJ_P0064440 Cngb3 protein_coding protein_coding MGP_C3HHeJ_T0100628.1 MGP_C3HHeJ_G0038822.1 mouse_genomes_project 4 53865864 53866079 - Gm25419 snoRNA snoRNA MGP_C3HHeJ_T0004409.1 MGP_C3HHeJ_G0003832.1 mouse_genomes_project 4 98151100 98152553 + 0610025J13Rik antisense antisense MGP_C3HHeJ_T0004410.1 MGP_C3HHeJ_G0003832.1 mouse_genomes_project 4 98151150 98161519 + 0610025J13Rik antisense antisense MGP_C3HHeJ_T0004411.1 MGP_C3HHeJ_G0003832.1 mouse_genomes_project 4 98151150 98161519 + 0610025J13Rik antisense antisense MGP_C3HHeJ_T0064269.1 MGP_C3HHeJ_G0027739.1 mouse_genomes_project 4 5211037 5285855 + MGP_C3HHeJ_P0064269 Rab2a protein_coding protein_coding MGP_C3HHeJ_T0100644.1 MGP_C3HHeJ_G0038838.1 mouse_genomes_project 4 74419765 74419895 - Gm22864 snoRNA snoRNA MGP_C3HHeJ_T0014421.1 MGP_C3HHeJ_G0012525.1 mouse_genomes_project 4 68376889 68380382 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069593.1 MGP_C3HHeJ_G0028955.1 mouse_genomes_project 4 158610346 158624503 + MGP_C3HHeJ_P0069593 Noc2l protein_coding protein_coding MGP_C3HHeJ_T0069594.1 MGP_C3HHeJ_G0028955.1 mouse_genomes_project 4 158610387 158624490 + MGP_C3HHeJ_P0069594 Noc2l protein_coding protein_coding MGP_C3HHeJ_T0068709.1 MGP_C3HHeJ_G0028755.1 mouse_genomes_project 4 142932832 142964033 - MGP_C3HHeJ_P0068709 Dnajc16 protein_coding protein_coding MGP_C3HHeJ_T0068710.1 MGP_C3HHeJ_G0028755.1 mouse_genomes_project 4 142942432 142946831 - Dnajc16 protein_coding processed_transcript MGP_C3HHeJ_T0068711.1 MGP_C3HHeJ_G0028755.1 mouse_genomes_project 4 142956210 142964073 - MGP_C3HHeJ_P0068711 Dnajc16 protein_coding protein_coding MGP_C3HHeJ_T0066332.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166374 107177635 + Cyb5rl protein_coding retained_intron MGP_C3HHeJ_T0066333.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166374 107185174 + MGP_C3HHeJ_P0066333 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066334.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166382 107170302 + MGP_C3HHeJ_P0066334 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066335.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166382 107186909 + MGP_C3HHeJ_P0066335 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066336.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166405 107187616 + MGP_C3HHeJ_P0066336 Cyb5rl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066337.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107166410 107170318 + MGP_C3HHeJ_P0066337 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066338.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107167991 107185174 + MGP_C3HHeJ_P0066338 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066339.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107168029 107187339 + MGP_C3HHeJ_P0066339 Cyb5rl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066340.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107169554 107184152 + MGP_C3HHeJ_P0066340 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066341.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107170256 107183687 + MGP_C3HHeJ_P0066341 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0066342.1 MGP_C3HHeJ_G0028226.1 mouse_genomes_project 4 107180374 107187125 + MGP_C3HHeJ_P0066342 Cyb5rl protein_coding protein_coding MGP_C3HHeJ_T0065677.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64612870 64624736 + MGP_C3HHeJ_P0065677 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0065678.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64612870 64624736 + MGP_C3HHeJ_P0065678 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0065679.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64613133 64622114 + MGP_C3HHeJ_P0065679 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0065680.1 MGP_C3HHeJ_G0028074.1 mouse_genomes_project 4 64613133 64622254 + MGP_C3HHeJ_P0065680 Trim32 protein_coding protein_coding MGP_C3HHeJ_T0066448.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108170569 108251065 - MGP_C3HHeJ_P0066448 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0066449.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108170998 108176065 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066450.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108171108 108199796 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066451.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108171280 108199852 - MGP_C3HHeJ_P0066451 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0066452.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108173062 108251009 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066453.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108218971 108251037 - MGP_C3HHeJ_P0066453 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0066454.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108222984 108250928 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066455.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108223293 108281068 - Scp2 protein_coding processed_transcript MGP_C3HHeJ_T0066456.1 MGP_C3HHeJ_G0028244.1 mouse_genomes_project 4 108234145 108281072 - MGP_C3HHeJ_P0066456 Scp2 protein_coding protein_coding MGP_C3HHeJ_T0069410.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794140 157795442 + Tmem52 protein_coding retained_intron MGP_C3HHeJ_T0069411.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794140 157795885 + MGP_C3HHeJ_P0069411 Tmem52 protein_coding protein_coding MGP_C3HHeJ_T0069412.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794140 157795885 + MGP_C3HHeJ_P0069412 Tmem52 protein_coding protein_coding MGP_C3HHeJ_T0069413.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794157 157795884 + MGP_C3HHeJ_P0069413 Tmem52 protein_coding protein_coding MGP_C3HHeJ_T0069414.1 MGP_C3HHeJ_G0028916.1 mouse_genomes_project 4 157794173 157795816 + Tmem52 protein_coding retained_intron MGP_C3HHeJ_T0010529.1 MGP_C3HHeJ_G0008662.1 mouse_genomes_project 4 119656894 119656960 + Mir1957a miRNA miRNA MGP_C3HHeJ_T0014341.1 MGP_C3HHeJ_G0012445.1 mouse_genomes_project 4 33594481 33595423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068736.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143289362 143401334 - MGP_C3HHeJ_P0068736 protein_coding protein_coding MGP_C3HHeJ_T0068737.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143300006 143305845 - protein_coding processed_transcript MGP_C3HHeJ_T0068738.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143305966 143347557 - MGP_C3HHeJ_P0068738 protein_coding protein_coding MGP_C3HHeJ_T0068739.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143327866 143431877 - MGP_C3HHeJ_P0068739 protein_coding protein_coding MGP_C3HHeJ_T0068740.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143327873 143401236 - MGP_C3HHeJ_P0068740 protein_coding protein_coding MGP_C3HHeJ_T0068741.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143327874 143335085 - protein_coding retained_intron MGP_C3HHeJ_T0068742.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143330175 143401334 - MGP_C3HHeJ_P0068742 protein_coding protein_coding MGP_C3HHeJ_T0068743.1 MGP_C3HHeJ_G0028762.1 mouse_genomes_project 4 143335389 143343187 - protein_coding retained_intron MGP_C3HHeJ_T0014656.1 MGP_C3HHeJ_G0012760.1 mouse_genomes_project 4 152306548 152306913 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099401.1 MGP_C3HHeJ_G0037595.1 mouse_genomes_project 4 136882226 136882329 + Gm26001 snRNA snRNA MGP_C3HHeJ_T0014539.1 MGP_C3HHeJ_G0012643.1 mouse_genomes_project 4 110727726 110727994 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066145.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101059035 101180839 - MGP_C3HHeJ_P0066145 Jak1 protein_coding protein_coding MGP_C3HHeJ_T0066146.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101060917 101061788 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066147.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101085901 101091719 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066148.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101087329 101091744 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066149.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101088182 101180838 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066150.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101088222 101180780 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0066151.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101097918 101180830 - MGP_C3HHeJ_P0066151 Jak1 protein_coding protein_coding MGP_C3HHeJ_T0066152.1 MGP_C3HHeJ_G0028185.1 mouse_genomes_project 4 101104130 101180783 - Jak1 protein_coding processed_transcript MGP_C3HHeJ_T0069112.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108916 154157980 + MGP_C3HHeJ_P0069112 Dnajc11 protein_coding protein_coding MGP_C3HHeJ_T0069113.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108956 154152527 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069114.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108959 154133456 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069115.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108964 154157061 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069116.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154108969 154157065 + MGP_C3HHeJ_P0069116 Dnajc11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069117.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154122329 154144414 + MGP_C3HHeJ_P0069117 Dnajc11 protein_coding protein_coding MGP_C3HHeJ_T0069118.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154133103 154147344 + Dnajc11 protein_coding processed_transcript MGP_C3HHeJ_T0069119.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154143635 154150127 + Dnajc11 protein_coding processed_transcript MGP_C3HHeJ_T0069120.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154145547 154152888 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069121.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154145616 154147341 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069122.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154154826 154156579 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0069123.1 MGP_C3HHeJ_G0028866.1 mouse_genomes_project 4 154155585 154157070 + Dnajc11 protein_coding retained_intron MGP_C3HHeJ_T0017847.1 MGP_C3HHeJ_G0015323.1 mouse_genomes_project 4 97571800 97574977 - Gm12676 processed_transcript processed_transcript MGP_C3HHeJ_T0066479.1 MGP_C3HHeJ_G0028250.1 mouse_genomes_project 4 108545048 108551831 - MGP_C3HHeJ_P0066479 Gpx7 protein_coding protein_coding MGP_C3HHeJ_T0066480.1 MGP_C3HHeJ_G0028250.1 mouse_genomes_project 4 108545507 108551594 - MGP_C3HHeJ_P0066480 Gpx7 protein_coding protein_coding MGP_C3HHeJ_T0014390.1 MGP_C3HHeJ_G0012494.1 mouse_genomes_project 4 52437762 52438166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102006.1 MGP_C3HHeJ_G0039971.1 mouse_genomes_project 4 114353004 114354014 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069185.1 MGP_C3HHeJ_G0028879.1 mouse_genomes_project 4 154481698 154482871 - MGP_C3HHeJ_P0069185 Hes3 protein_coding protein_coding MGP_C3HHeJ_T0068545.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140348437 140469776 + MGP_C3HHeJ_P0068545 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068547.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140378755 140492195 + MGP_C3HHeJ_P0068547 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068548.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140378755 140492253 + MGP_C3HHeJ_P0068548 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068549.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140378765 140395681 + Ubr4 protein_coding processed_transcript MGP_C3HHeJ_T0068550.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140412503 140451989 + MGP_C3HHeJ_P0068550 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068551.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140414258 140415073 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068552.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140434037 140437193 + MGP_C3HHeJ_P0068552 Ubr4 protein_coding protein_coding MGP_C3HHeJ_T0068553.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140463283 140464000 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068554.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140477107 140481277 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068555.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140479410 140483066 + Ubr4 protein_coding processed_transcript MGP_C3HHeJ_T0068556.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140479593 140481520 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0068557.1 MGP_C3HHeJ_G0028715.1 mouse_genomes_project 4 140480846 140483148 + Ubr4 protein_coding retained_intron MGP_C3HHeJ_T0065233.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44348837 44426584 + MGP_C3HHeJ_P0065233 Tmod1 protein_coding protein_coding MGP_C3HHeJ_T0065234.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44349111 44400751 + MGP_C3HHeJ_P0065234 Tmod1 protein_coding protein_coding MGP_C3HHeJ_T0065235.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44387251 44409602 + Tmod1 protein_coding processed_transcript MGP_C3HHeJ_T0065236.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44392807 44400735 + Tmod1 protein_coding processed_transcript MGP_C3HHeJ_T0065237.1 MGP_C3HHeJ_G0027951.1 mouse_genomes_project 4 44410136 44425037 + Tmod1 protein_coding processed_transcript MGP_C3HHeJ_T0069588.1 MGP_C3HHeJ_G0028951.1 mouse_genomes_project 4 158572229 158574079 + MGP_C3HHeJ_P0069588 AW011738 protein_coding protein_coding MGP_C3HHeJ_T0099328.1 MGP_C3HHeJ_G0037522.1 mouse_genomes_project 4 13791757 13791863 - Gm23975 snRNA snRNA MGP_C3HHeJ_T0014268.1 MGP_C3HHeJ_G0012372.1 mouse_genomes_project 4 13633506 13634165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064409.1 MGP_C3HHeJ_G0027766.1 mouse_genomes_project 4 11499124 11664838 - MGP_C3HHeJ_P0064409 Lrrc69 protein_coding protein_coding MGP_C3HHeJ_T0064410.1 MGP_C3HHeJ_G0027766.1 mouse_genomes_project 4 11530727 11624451 - Lrrc69 protein_coding processed_transcript MGP_C3HHeJ_T0064411.1 MGP_C3HHeJ_G0027766.1 mouse_genomes_project 4 11530727 11664830 - MGP_C3HHeJ_P0064411 Lrrc69 protein_coding protein_coding MGP_C3HHeJ_T0100624.1 MGP_C3HHeJ_G0038818.1 mouse_genomes_project 4 48799533 48799665 + Gm25485 snoRNA snoRNA MGP_C3HHeJ_T0069564.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158388344 158404742 - MGP_C3HHeJ_P0069564 Ttll10 protein_coding protein_coding MGP_C3HHeJ_T0069565.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158388417 158413375 - MGP_C3HHeJ_P0069565 Ttll10 protein_coding protein_coding MGP_C3HHeJ_T0069566.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158388804 158404389 - MGP_C3HHeJ_P0069566 Ttll10 protein_coding protein_coding MGP_C3HHeJ_T0069567.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158389309 158397052 - Ttll10 protein_coding processed_transcript MGP_C3HHeJ_T0069568.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158395394 158413302 - Ttll10 protein_coding retained_intron MGP_C3HHeJ_T0069569.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158396127 158397912 - Ttll10 protein_coding processed_transcript MGP_C3HHeJ_T0069570.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158396137 158401899 - Ttll10 protein_coding processed_transcript MGP_C3HHeJ_T0069571.1 MGP_C3HHeJ_G0028947.1 mouse_genomes_project 4 158400713 158401867 - Ttll10 protein_coding retained_intron MGP_C3HHeJ_T0010553.1 MGP_C3HHeJ_G0008686.1 mouse_genomes_project 4 137385203 137385262 - Gm22180 miRNA miRNA MGP_C3HHeJ_T0066672.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115273807 115317103 + MGP_C3HHeJ_P0066672 Stil protein_coding protein_coding MGP_C3HHeJ_T0066673.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115273830 115313297 + MGP_C3HHeJ_P0066673 Stil protein_coding protein_coding MGP_C3HHeJ_T0066674.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115273830 115317103 + MGP_C3HHeJ_P0066674 Stil protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066675.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115280405 115289911 + MGP_C3HHeJ_P0066675 Stil protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066676.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115283773 115295476 + Stil protein_coding processed_transcript MGP_C3HHeJ_T0066677.1 MGP_C3HHeJ_G0028289.1 mouse_genomes_project 4 115289845 115297039 + Stil protein_coding retained_intron MGP_C3HHeJ_T0014443.1 MGP_C3HHeJ_G0012547.1 mouse_genomes_project 4 75054713 75055609 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007823.1 MGP_C3HHeJ_G0006393.1 mouse_genomes_project 4 101273481 101321823 + 0610043K17Rik lincRNA lincRNA MGP_C3HHeJ_T0007825.1 MGP_C3HHeJ_G0006393.1 mouse_genomes_project 4 101287047 101313760 + 0610043K17Rik lincRNA lincRNA MGP_C3HHeJ_T0004525.1 MGP_C3HHeJ_G0003921.1 mouse_genomes_project 4 151799103 151800134 + antisense antisense MGP_C3HHeJ_T0004526.1 MGP_C3HHeJ_G0003921.1 mouse_genomes_project 4 151799103 151800009 + antisense antisense MGP_C3HHeJ_T0007882.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130194795 130197725 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0007883.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130194805 130197590 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0007884.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130194837 130197344 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0007885.1 MGP_C3HHeJ_G0006434.1 mouse_genomes_project 4 130195012 130207979 + E330017L17Rik lincRNA lincRNA MGP_C3HHeJ_T0067759.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130339958 130393586 + MGP_C3HHeJ_P0067759 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067760.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130339993 130341835 + MGP_C3HHeJ_P0067760 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067761.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340003 130386915 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067762.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340027 130373824 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067763.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340063 130343964 + MGP_C3HHeJ_P0067763 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067764.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130340080 130393592 + MGP_C3HHeJ_P0067764 Col16a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067765.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130347091 130350652 + MGP_C3HHeJ_P0067765 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067766.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130347136 130348098 + Col16a1 protein_coding retained_intron MGP_C3HHeJ_T0067767.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130348060 130393586 + MGP_C3HHeJ_P0067767 Col16a1 protein_coding protein_coding MGP_C3HHeJ_T0067768.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130361765 130374922 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067769.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130370520 130373631 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067770.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130372445 130374043 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0067771.1 MGP_C3HHeJ_G0028538.1 mouse_genomes_project 4 130391912 130393585 + Col16a1 protein_coding processed_transcript MGP_C3HHeJ_T0100606.1 MGP_C3HHeJ_G0038800.1 mouse_genomes_project 4 12803667 12803735 - Gm26148 snoRNA snoRNA MGP_C3HHeJ_T0017893.1 MGP_C3HHeJ_G0015348.1 mouse_genomes_project 4 157940746 157958141 - Gm16023 processed_transcript processed_transcript MGP_C3HHeJ_T0017894.1 MGP_C3HHeJ_G0015348.1 mouse_genomes_project 4 157948408 157957866 - Gm16023 processed_transcript processed_transcript MGP_C3HHeJ_T0014354.1 MGP_C3HHeJ_G0012458.1 mouse_genomes_project 4 38018047 38018465 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068117.1 MGP_C3HHeJ_G0028611.1 mouse_genomes_project 4 134769309 134782496 - MGP_C3HHeJ_P0068117 protein_coding protein_coding MGP_C3HHeJ_T0068887.1 MGP_C3HHeJ_G0028823.1 mouse_genomes_project 4 150106853 150112652 + MGP_C3HHeJ_P0068887 Fbxo2 protein_coding protein_coding MGP_C3HHeJ_T0014260.1 MGP_C3HHeJ_G0012364.1 mouse_genomes_project 4 12634020 12634858 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067467.1 MGP_C3HHeJ_G0028478.1 mouse_genomes_project 4 126575598 126620381 - MGP_C3HHeJ_P0067467 Ago4 protein_coding protein_coding MGP_C3HHeJ_T0067468.1 MGP_C3HHeJ_G0028478.1 mouse_genomes_project 4 126601189 126602627 - Ago4 protein_coding processed_transcript MGP_C3HHeJ_T0004391.1 MGP_C3HHeJ_G0003822.1 mouse_genomes_project 4 71286568 71287250 + Gm11250 antisense antisense MGP_C3HHeJ_T0065674.1 MGP_C3HHeJ_G0028072.1 mouse_genomes_project 4 64112280 64346910 + MGP_C3HHeJ_P0065674 Pappa protein_coding protein_coding MGP_C3HHeJ_T0007917.1 MGP_C3HHeJ_G0006454.1 mouse_genomes_project 4 137927525 137928527 - Gm13001 lincRNA lincRNA MGP_C3HHeJ_T0065938.1 MGP_C3HHeJ_G0028131.1 mouse_genomes_project 4 88515258 88515756 - MGP_C3HHeJ_P0065938 4930553M12Rik protein_coding protein_coding MGP_C3HHeJ_T0014521.1 MGP_C3HHeJ_G0012625.1 mouse_genomes_project 4 105632537 105633138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065995.1 MGP_C3HHeJ_G0028150.1 mouse_genomes_project 4 94793354 94796542 - MGP_C3HHeJ_P0065995 Jun protein_coding protein_coding MGP_C3HHeJ_T0065420.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53496366 53565303 + MGP_C3HHeJ_P0065420 protein_coding protein_coding MGP_C3HHeJ_T0065421.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53564408 53640798 + MGP_C3HHeJ_P0065421 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065422.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53568369 53638582 + MGP_C3HHeJ_P0065422 protein_coding protein_coding MGP_C3HHeJ_T0065423.1 MGP_C3HHeJ_G0028005.1 mouse_genomes_project 4 53568483 53638554 + MGP_C3HHeJ_P0065423 protein_coding protein_coding MGP_C3HHeJ_T0014227.1 MGP_C3HHeJ_G0012331.1 mouse_genomes_project 4 2247643 2248115 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001382.1 MGP_C3HHeJ_G0001313.1 mouse_genomes_project 4 106353731 106354771 - TEC TEC MGP_C3HHeJ_T0010484.1 MGP_C3HHeJ_G0008617.1 mouse_genomes_project 4 6404427 6404499 + Gm25677 miRNA miRNA MGP_C3HHeJ_T0100673.1 MGP_C3HHeJ_G0038867.1 mouse_genomes_project 4 131190036 131190166 - Gm22660 snoRNA snoRNA MGP_C3HHeJ_T0068238.1 MGP_C3HHeJ_G0028640.1 mouse_genomes_project 4 136104592 136126003 - MGP_C3HHeJ_P0068238 Rcan3 protein_coding protein_coding MGP_C3HHeJ_T0068239.1 MGP_C3HHeJ_G0028640.1 mouse_genomes_project 4 136104592 136117572 - MGP_C3HHeJ_P0068239 Rcan3 protein_coding protein_coding MGP_C3HHeJ_T0068240.1 MGP_C3HHeJ_G0028640.1 mouse_genomes_project 4 136110730 136125973 - MGP_C3HHeJ_P0068240 Rcan3 protein_coding protein_coding MGP_C3HHeJ_T0069251.1 MGP_C3HHeJ_G0028889.1 mouse_genomes_project 4 156245223 156278434 + MGP_C3HHeJ_P0069251 Cep104 protein_coding protein_coding MGP_C3HHeJ_T0069252.1 MGP_C3HHeJ_G0028889.1 mouse_genomes_project 4 156258177 156278434 + MGP_C3HHeJ_P0069252 Cep104 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069253.1 MGP_C3HHeJ_G0028889.1 mouse_genomes_project 4 156258917 156259788 + Cep104 protein_coding retained_intron MGP_C3HHeJ_T0068775.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145606952 145613256 - MGP_C3HHeJ_P0068775 protein_coding protein_coding MGP_C3HHeJ_T0068776.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609430 145613690 - MGP_C3HHeJ_P0068776 protein_coding protein_coding MGP_C3HHeJ_T0068777.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609598 145613256 - MGP_C3HHeJ_P0068777 protein_coding protein_coding MGP_C3HHeJ_T0068778.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609763 145613283 - MGP_C3HHeJ_P0068778 protein_coding protein_coding MGP_C3HHeJ_T0068779.1 MGP_C3HHeJ_G0028783.1 mouse_genomes_project 4 145609840 145613638 - MGP_C3HHeJ_P0068779 protein_coding protein_coding MGP_C3HHeJ_T0010560.1 MGP_C3HHeJ_G0008693.1 mouse_genomes_project 4 141019632 141019727 - Mir2139 miRNA miRNA MGP_C3HHeJ_T0007792.1 MGP_C3HHeJ_G0006367.1 mouse_genomes_project 4 81369044 81395987 - Gm11264 lincRNA lincRNA MGP_C3HHeJ_T0007811.1 MGP_C3HHeJ_G0006382.1 mouse_genomes_project 4 93833936 94171542 - lincRNA lincRNA MGP_C3HHeJ_T0067856.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317450 132334367 - MGP_C3HHeJ_P0067856 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067857.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132334404 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067858.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132478051 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067859.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132478022 - MGP_C3HHeJ_P0067859 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067860.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132366800 - MGP_C3HHeJ_P0067860 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067861.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132366831 - MGP_C3HHeJ_P0067861 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067862.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132407526 - MGP_C3HHeJ_P0067862 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067863.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132403902 - MGP_C3HHeJ_P0067863 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067864.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132407525 - MGP_C3HHeJ_P0067864 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067865.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317452 132478022 - MGP_C3HHeJ_P0067865 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067866.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317468 132474067 - MGP_C3HHeJ_P0067866 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067867.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317468 132451226 - MGP_C3HHeJ_P0067867 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067868.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132317468 132451226 - MGP_C3HHeJ_P0067868 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067869.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132318168 132474067 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067870.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132320549 132407519 - MGP_C3HHeJ_P0067870 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067871.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132356574 132451239 - MGP_C3HHeJ_P0067871 Epb41 protein_coding protein_coding MGP_C3HHeJ_T0067872.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132388501 132400412 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0067873.1 MGP_C3HHeJ_G0028557.1 mouse_genomes_project 4 132403883 132477994 - Epb41 protein_coding processed_transcript MGP_C3HHeJ_T0001385.1 MGP_C3HHeJ_G0001316.1 mouse_genomes_project 4 124265882 124267160 - TEC TEC MGP_C3HHeJ_T0064795.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39688141 39699000 + MGP_C3HHeJ_P0064795 protein_coding protein_coding MGP_C3HHeJ_T0064797.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39693120 39695663 + protein_coding retained_intron MGP_C3HHeJ_T0064798.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39693120 39697588 + protein_coding retained_intron MGP_C3HHeJ_T0064800.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39697326 39699000 + protein_coding retained_intron MGP_C3HHeJ_T0064803.1 MGP_C3HHeJ_G0027866.1 mouse_genomes_project 4 39697975 39699000 + protein_coding retained_intron MGP_C3HHeJ_T0102002.1 MGP_C3HHeJ_G0039967.1 mouse_genomes_project 4 101806596 101806869 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067808.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988876 131110665 + MGP_C3HHeJ_P0067808 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067809.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988914 131110663 + MGP_C3HHeJ_P0067809 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067810.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988914 131110663 + MGP_C3HHeJ_P0067810 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067811.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988921 131047285 + Pum1 protein_coding retained_intron MGP_C3HHeJ_T0067812.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988922 131075402 + MGP_C3HHeJ_P0067812 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067813.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988941 131109366 + MGP_C3HHeJ_P0067813 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067814.1 MGP_C3HHeJ_G0028549.1 mouse_genomes_project 4 130988961 131109354 + MGP_C3HHeJ_P0067814 Pum1 protein_coding protein_coding MGP_C3HHeJ_T0067675.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129844757 129854837 - MGP_C3HHeJ_P0067675 Eif3i protein_coding protein_coding MGP_C3HHeJ_T0067676.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129846128 129849976 - Eif3i protein_coding retained_intron MGP_C3HHeJ_T0067677.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129846325 129854788 - MGP_C3HHeJ_P0067677 Eif3i protein_coding protein_coding MGP_C3HHeJ_T0067678.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129849334 129854788 - Eif3i protein_coding processed_transcript MGP_C3HHeJ_T0067679.1 MGP_C3HHeJ_G0028526.1 mouse_genomes_project 4 129852389 129854805 - Eif3i protein_coding retained_intron MGP_C3HHeJ_T0099361.1 MGP_C3HHeJ_G0037555.1 mouse_genomes_project 4 86015380 86015454 + Gm26017 snRNA snRNA MGP_C3HHeJ_T0065629.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62080425 62086853 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0065630.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62080428 62086938 - MGP_C3HHeJ_P0065630 Kif12 protein_coding protein_coding MGP_C3HHeJ_T0065631.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62082268 62085589 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0065632.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62082520 62085981 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0065633.1 MGP_C3HHeJ_G0028061.1 mouse_genomes_project 4 62084198 62086537 - Kif12 protein_coding processed_transcript MGP_C3HHeJ_T0014475.1 MGP_C3HHeJ_G0012579.1 mouse_genomes_project 4 90058496 90060201 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066247.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 103621902 104197234 + Dab1 protein_coding processed_transcript MGP_C3HHeJ_T0066248.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 103622208 104713254 + MGP_C3HHeJ_P0066248 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066249.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104391741 104712368 + MGP_C3HHeJ_P0066249 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066250.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104392217 104777786 + MGP_C3HHeJ_P0066250 Dab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066251.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104392217 104780833 + MGP_C3HHeJ_P0066251 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066252.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104538399 104713254 + MGP_C3HHeJ_P0066252 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0066253.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104621437 104711664 + Dab1 protein_coding processed_transcript MGP_C3HHeJ_T0066254.1 MGP_C3HHeJ_G0028205.1 mouse_genomes_project 4 104635509 104748850 + MGP_C3HHeJ_P0066254 Dab1 protein_coding protein_coding MGP_C3HHeJ_T0068705.1 MGP_C3HHeJ_G0028752.1 mouse_genomes_project 4 142843329 142892382 - MGP_C3HHeJ_P0068705 protein_coding protein_coding MGP_C3HHeJ_T0068706.1 MGP_C3HHeJ_G0028752.1 mouse_genomes_project 4 142849353 142892382 - MGP_C3HHeJ_P0068706 protein_coding protein_coding MGP_C3HHeJ_T0014572.1 MGP_C3HHeJ_G0012676.1 mouse_genomes_project 4 120065133 120065510 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010512.1 MGP_C3HHeJ_G0008645.1 mouse_genomes_project 4 66682436 66682513 + Gm44497 miRNA miRNA MGP_C3HHeJ_T0068498.1 MGP_C3HHeJ_G0028702.1 mouse_genomes_project 4 139834432 139837373 - MGP_C3HHeJ_P0068498 Gm13030 protein_coding protein_coding MGP_C3HHeJ_T0099398.1 MGP_C3HHeJ_G0037592.1 mouse_genomes_project 4 134344314 134344462 - Gm25270 snRNA snRNA MGP_C3HHeJ_T0068817.1 MGP_C3HHeJ_G0028805.1 mouse_genomes_project 4 148179277 148855527 + MGP_C3HHeJ_P0068817 protein_coding protein_coding MGP_C3HHeJ_T0064867.1 MGP_C3HHeJ_G0027887.1 mouse_genomes_project 4 40701481 40702582 + MGP_C3HHeJ_P0064867 protein_coding protein_coding MGP_C3HHeJ_T0066892.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117464065 117520015 + MGP_C3HHeJ_P0066892 Eif2b3 protein_coding protein_coding MGP_C3HHeJ_T0066893.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117464066 117533322 + MGP_C3HHeJ_P0066893 Eif2b3 protein_coding protein_coding MGP_C3HHeJ_T0066894.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117490588 117506115 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0066895.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117513242 117521057 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0066896.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117514234 117533887 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0066897.1 MGP_C3HHeJ_G0028337.1 mouse_genomes_project 4 117528248 117533429 + Eif2b3 protein_coding processed_transcript MGP_C3HHeJ_T0007813.1 MGP_C3HHeJ_G0006384.1 mouse_genomes_project 4 94946858 94963143 + Gm12708 lincRNA lincRNA MGP_C3HHeJ_T0007814.1 MGP_C3HHeJ_G0006384.1 mouse_genomes_project 4 94946907 94959664 + Gm12708 lincRNA lincRNA MGP_C3HHeJ_T0068463.1 MGP_C3HHeJ_G0028691.1 mouse_genomes_project 4 139226623 139229636 - MGP_C3HHeJ_P0068463 Pink1 protein_coding protein_coding MGP_C3HHeJ_T0068464.1 MGP_C3HHeJ_G0028691.1 mouse_genomes_project 4 139226626 139240810 - MGP_C3HHeJ_P0068464 Pink1 protein_coding protein_coding MGP_C3HHeJ_T0068465.1 MGP_C3HHeJ_G0028691.1 mouse_genomes_project 4 139227136 139240743 - MGP_C3HHeJ_P0068465 Pink1 protein_coding protein_coding MGP_C3HHeJ_T0066518.1 MGP_C3HHeJ_G0028259.1 mouse_genomes_project 4 109024639 109025861 - MGP_C3HHeJ_P0066518 A730015C16Rik protein_coding protein_coding MGP_C3HHeJ_T0099397.1 MGP_C3HHeJ_G0037591.1 mouse_genomes_project 4 133414299 133414406 - Gm24913 snRNA snRNA MGP_C3HHeJ_T0007816.1 MGP_C3HHeJ_G0006386.1 mouse_genomes_project 4 99040356 99055071 - Gm12681 lincRNA lincRNA MGP_C3HHeJ_T0068310.1 MGP_C3HHeJ_G0028657.1 mouse_genomes_project 4 136888237 136890135 + MGP_C3HHeJ_P0068310 Id3 protein_coding protein_coding MGP_C3HHeJ_T0068311.1 MGP_C3HHeJ_G0028657.1 mouse_genomes_project 4 136888603 136889459 + Id3 protein_coding retained_intron MGP_C3HHeJ_T0068312.1 MGP_C3HHeJ_G0028657.1 mouse_genomes_project 4 136889716 136890498 + Id3 protein_coding processed_transcript MGP_C3HHeJ_T0014395.1 MGP_C3HHeJ_G0012499.1 mouse_genomes_project 4 53818193 53818653 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065928.1 MGP_C3HHeJ_G0028121.1 mouse_genomes_project 4 88289971 88290729 - MGP_C3HHeJ_P0065928 protein_coding protein_coding MGP_C3HHeJ_T0014648.1 MGP_C3HHeJ_G0012752.1 mouse_genomes_project 4 149819769 149820102 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064821.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707544 39708515 - protein_coding processed_transcript MGP_C3HHeJ_T0064823.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707574 39708641 - protein_coding processed_transcript MGP_C3HHeJ_T0064824.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707589 39708619 - protein_coding processed_transcript MGP_C3HHeJ_T0064829.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707611 39708668 - MGP_C3HHeJ_P0064829 protein_coding protein_coding MGP_C3HHeJ_T0064830.1 MGP_C3HHeJ_G0027873.1 mouse_genomes_project 4 39707615 39708524 - protein_coding processed_transcript MGP_C3HHeJ_T0066310.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106998725 107129749 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066311.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999494 107148189 + MGP_C3HHeJ_P0066311 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066312.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999535 107137422 + MGP_C3HHeJ_P0066312 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066313.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999557 107147062 + MGP_C3HHeJ_P0066313 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066314.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999691 107146994 + MGP_C3HHeJ_P0066314 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066315.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 106999885 107109249 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066316.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107000322 107147011 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066317.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107011188 107129701 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066318.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107011228 107136928 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066319.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107036426 107147039 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066320.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107051035 107147187 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066321.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107062210 107129747 + MGP_C3HHeJ_P0066321 Ssbp3 protein_coding protein_coding MGP_C3HHeJ_T0066322.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107126863 107136043 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066323.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107129511 107130165 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066324.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107136881 107147015 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066325.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107136912 107139337 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0066326.1 MGP_C3HHeJ_G0028224.1 mouse_genomes_project 4 107145449 107146946 + Ssbp3 protein_coding processed_transcript MGP_C3HHeJ_T0101998.1 MGP_C3HHeJ_G0039963.1 mouse_genomes_project 4 95931837 95932016 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014246.1 MGP_C3HHeJ_G0012350.1 mouse_genomes_project 4 8202005 8202420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064306.1 MGP_C3HHeJ_G0027743.1 mouse_genomes_project 4 6581529 6600642 + MGP_C3HHeJ_P0064306 Gdf6 protein_coding protein_coding MGP_C3HHeJ_T0067956.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133304769 133322097 - MGP_C3HHeJ_P0067956 Ppp1r8 protein_coding protein_coding MGP_C3HHeJ_T0067957.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133306608 133311872 - Ppp1r8 protein_coding processed_transcript MGP_C3HHeJ_T0067958.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133309329 133322052 - Ppp1r8 protein_coding processed_transcript MGP_C3HHeJ_T0067959.1 MGP_C3HHeJ_G0028577.1 mouse_genomes_project 4 133313588 133322062 - Ppp1r8 protein_coding processed_transcript MGP_C3HHeJ_T0065920.1 MGP_C3HHeJ_G0028117.1 mouse_genomes_project 4 88136826 88137576 - MGP_C3HHeJ_P0065920 Ifnb1 protein_coding protein_coding MGP_C3HHeJ_T0014491.1 MGP_C3HHeJ_G0012595.1 mouse_genomes_project 4 94243531 94244108 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068699.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142787276 142827351 - MGP_C3HHeJ_P0068699 Plekhm2 protein_coding protein_coding MGP_C3HHeJ_T0068700.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142787276 142828132 - MGP_C3HHeJ_P0068700 Plekhm2 protein_coding protein_coding MGP_C3HHeJ_T0068701.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142790562 142791750 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0068702.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142792659 142793260 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0068703.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142794694 142804460 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0068704.1 MGP_C3HHeJ_G0028751.1 mouse_genomes_project 4 142803581 142805030 - Plekhm2 protein_coding retained_intron MGP_C3HHeJ_T0066693.1 MGP_C3HHeJ_G0028295.1 mouse_genomes_project 4 115561895 115714879 + MGP_C3HHeJ_P0066693 protein_coding protein_coding MGP_C3HHeJ_T0004414.1 MGP_C3HHeJ_G0003835.1 mouse_genomes_project 4 99594022 99650678 - Gm12682 antisense antisense MGP_C3HHeJ_T0004510.1 MGP_C3HHeJ_G0003910.1 mouse_genomes_project 4 149930789 149933655 - Gm13054 antisense antisense MGP_C3HHeJ_T0065695.1 MGP_C3HHeJ_G0028079.1 mouse_genomes_project 4 70875073 70877396 - MGP_C3HHeJ_P0065695 Gm11232 protein_coding protein_coding MGP_C3HHeJ_T0064955.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433466 41514544 + Atp8b5 protein_coding retained_intron MGP_C3HHeJ_T0064956.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433477 41546006 + MGP_C3HHeJ_P0064956 Atp8b5 protein_coding protein_coding MGP_C3HHeJ_T0064957.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433492 41546008 + MGP_C3HHeJ_P0064957 Atp8b5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064958.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433492 41494106 + MGP_C3HHeJ_P0064958 Atp8b5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064959.1 MGP_C3HHeJ_G0027900.1 mouse_genomes_project 4 41433498 41495789 + MGP_C3HHeJ_P0064959 Atp8b5 protein_coding protein_coding MGP_C3HHeJ_T0004541.1 MGP_C3HHeJ_G0003934.1 mouse_genomes_project 4 157658736 157659519 + Gm27200 antisense antisense MGP_C3HHeJ_T0001396.1 MGP_C3HHeJ_G0001326.1 mouse_genomes_project 4 154090521 154090943 - TEC TEC MGP_C3HHeJ_T0067774.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425306 130434252 - MGP_C3HHeJ_P0067774 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0067775.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425306 130433641 - MGP_C3HHeJ_P0067775 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0067776.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425306 130434449 - MGP_C3HHeJ_P0067776 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0067777.1 MGP_C3HHeJ_G0028540.1 mouse_genomes_project 4 130425930 130432718 - MGP_C3HHeJ_P0067777 Hcrtr1 protein_coding protein_coding MGP_C3HHeJ_T0065460.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55627058 55783096 - MGP_C3HHeJ_P0065460 protein_coding protein_coding MGP_C3HHeJ_T0065461.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55630760 55665688 - MGP_C3HHeJ_P0065461 protein_coding protein_coding MGP_C3HHeJ_T0065462.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55699605 55783096 - MGP_C3HHeJ_P0065462 protein_coding protein_coding MGP_C3HHeJ_T0065463.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55700911 55708450 - protein_coding processed_transcript MGP_C3HHeJ_T0065464.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55711195 55741768 - protein_coding processed_transcript MGP_C3HHeJ_T0065465.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55716713 55777989 - protein_coding processed_transcript MGP_C3HHeJ_T0065466.1 MGP_C3HHeJ_G0028016.1 mouse_genomes_project 4 55725843 55759330 - protein_coding processed_transcript MGP_C3HHeJ_T0065288.1 MGP_C3HHeJ_G0027965.1 mouse_genomes_project 4 45439020 45467829 + MGP_C3HHeJ_P0065288 Galnt12 protein_coding protein_coding MGP_C3HHeJ_T0069082.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153055488 154032861 - MGP_C3HHeJ_P0069082 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069100.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207205 154033068 - MGP_C3HHeJ_P0069100 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069101.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207206 154032938 - MGP_C3HHeJ_P0069101 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069102.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207206 153227497 - MGP_C3HHeJ_P0069102 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069103.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207494 153277940 - MGP_C3HHeJ_P0069103 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069104.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153207494 153257128 - MGP_C3HHeJ_P0069104 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069105.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153233765 153287987 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069106.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153233850 153256855 - MGP_C3HHeJ_P0069106 Camta1 protein_coding protein_coding MGP_C3HHeJ_T0069108.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153627801 154032842 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069109.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153957178 154032896 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069110.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153958842 154032930 - Camta1 protein_coding processed_transcript MGP_C3HHeJ_T0069111.1 MGP_C3HHeJ_G0028861.1 mouse_genomes_project 4 153959106 154032861 - MGP_C3HHeJ_P0069111 Camta1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0007738.1 MGP_C3HHeJ_G0006320.1 mouse_genomes_project 4 28040229 28185168 + 4930556G01Rik lincRNA lincRNA MGP_C3HHeJ_T0069071.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034186 153052594 - MGP_C3HHeJ_P0069071 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069072.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034186 153048102 - MGP_C3HHeJ_P0069072 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069073.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034198 153047802 - MGP_C3HHeJ_P0069073 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069074.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034289 153046583 - MGP_C3HHeJ_P0069074 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069075.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034292 153047827 - MGP_C3HHeJ_P0069075 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069076.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153034437 153038919 - Park7 protein_coding processed_transcript MGP_C3HHeJ_T0069077.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153038089 153047659 - MGP_C3HHeJ_P0069077 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069078.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153040647 153048004 - Park7 protein_coding retained_intron MGP_C3HHeJ_T0069079.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153043289 153048044 - MGP_C3HHeJ_P0069079 Park7 protein_coding protein_coding MGP_C3HHeJ_T0069080.1 MGP_C3HHeJ_G0028859.1 mouse_genomes_project 4 153043413 153052363 - MGP_C3HHeJ_P0069080 Park7 protein_coding protein_coding MGP_C3HHeJ_T0066275.1 MGP_C3HHeJ_G0028216.1 mouse_genomes_project 4 106630650 106660365 + MGP_C3HHeJ_P0066275 Dhcr24 protein_coding protein_coding MGP_C3HHeJ_T0014618.1 MGP_C3HHeJ_G0012722.1 mouse_genomes_project 4 135956642 135956952 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067964.1 MGP_C3HHeJ_G0028580.1 mouse_genomes_project 4 133460556 133471585 + Fgr protein_coding processed_transcript MGP_C3HHeJ_T0067965.1 MGP_C3HHeJ_G0028580.1 mouse_genomes_project 4 133460563 133491116 + MGP_C3HHeJ_P0067965 Fgr protein_coding protein_coding MGP_C3HHeJ_T0067966.1 MGP_C3HHeJ_G0028580.1 mouse_genomes_project 4 133463577 133489973 + Fgr protein_coding processed_transcript MGP_C3HHeJ_T0067289.1 MGP_C3HHeJ_G0028437.1 mouse_genomes_project 4 123229744 123277657 - MGP_C3HHeJ_P0067289 Bmp8a protein_coding protein_coding MGP_C3HHeJ_T0067221.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121524645 121540226 - MGP_C3HHeJ_P0067221 Zfp69 protein_coding protein_coding MGP_C3HHeJ_T0067222.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121524861 121537957 - MGP_C3HHeJ_P0067222 Zfp69 protein_coding protein_coding MGP_C3HHeJ_T0067223.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121525814 121536374 - MGP_C3HHeJ_P0067223 Zfp69 protein_coding protein_coding MGP_C3HHeJ_T0067224.1 MGP_C3HHeJ_G0028415.1 mouse_genomes_project 4 121525815 121530459 - Zfp69 protein_coding retained_intron MGP_C3HHeJ_T0099375.1 MGP_C3HHeJ_G0037569.1 mouse_genomes_project 4 108695099 108695206 - Gm22345 snRNA snRNA MGP_C3HHeJ_T0069365.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386744 157455441 + MGP_C3HHeJ_P0069365 Morn1 protein_coding protein_coding MGP_C3HHeJ_T0069366.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386744 157416427 + MGP_C3HHeJ_P0069366 Morn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069367.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386756 157395235 + MGP_C3HHeJ_P0069367 Morn1 protein_coding protein_coding MGP_C3HHeJ_T0069368.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386770 157395516 + MGP_C3HHeJ_P0069368 Morn1 protein_coding protein_coding MGP_C3HHeJ_T0069369.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386773 157398527 + MGP_C3HHeJ_P0069369 Morn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069370.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386781 157448891 + Morn1 protein_coding processed_transcript MGP_C3HHeJ_T0069371.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157386795 157448869 + Morn1 protein_coding processed_transcript MGP_C3HHeJ_T0069372.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157404324 157436067 + Morn1 protein_coding retained_intron MGP_C3HHeJ_T0069373.1 MGP_C3HHeJ_G0028910.1 mouse_genomes_project 4 157414935 157435631 + Morn1 protein_coding retained_intron MGP_C3HHeJ_T0007828.1 MGP_C3HHeJ_G0006396.1 mouse_genomes_project 4 103294802 103315194 + 4930456L15Rik lincRNA lincRNA MGP_C3HHeJ_T0100598.1 MGP_C3HHeJ_G0038792.1 mouse_genomes_project 4 495651 495719 - Gm24016 snoRNA snoRNA MGP_C3HHeJ_T0014429.1 MGP_C3HHeJ_G0012533.1 mouse_genomes_project 4 71672077 71672410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100674.1 MGP_C3HHeJ_G0038868.1 mouse_genomes_project 4 131598666 131598800 + Gm25261 snoRNA snoRNA MGP_C3HHeJ_T0068640.1 MGP_C3HHeJ_G0028737.1 mouse_genomes_project 4 142266824 142325591 + MGP_C3HHeJ_P0068640 Fbxo42 protein_coding protein_coding MGP_C3HHeJ_T0068641.1 MGP_C3HHeJ_G0028737.1 mouse_genomes_project 4 142266833 142316795 + Fbxo42 protein_coding processed_transcript MGP_C3HHeJ_T0067078.1 MGP_C3HHeJ_G0028380.1 mouse_genomes_project 4 119401913 119403005 + MGP_C3HHeJ_P0067078 Olfr1330 protein_coding protein_coding MGP_C3HHeJ_T0102016.1 MGP_C3HHeJ_G0039981.1 mouse_genomes_project 4 122441192 122463665 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0068513.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140084027 140116573 - MGP_C3HHeJ_P0068513 Minos1 protein_coding protein_coding MGP_C3HHeJ_T0068514.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140086001 140088166 - Minos1 protein_coding processed_transcript MGP_C3HHeJ_T0068515.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140086033 140093478 - Minos1 protein_coding processed_transcript MGP_C3HHeJ_T0068516.1 MGP_C3HHeJ_G0028709.1 mouse_genomes_project 4 140086112 140116454 - Minos1 protein_coding processed_transcript MGP_C3HHeJ_T0004398.1 MGP_C3HHeJ_G0003829.1 mouse_genomes_project 4 88355337 88361774 - Gm13274 antisense antisense MGP_C3HHeJ_T0004399.1 MGP_C3HHeJ_G0003829.1 mouse_genomes_project 4 88355430 88361773 - Gm13274 antisense antisense MGP_C3HHeJ_T0014439.1 MGP_C3HHeJ_G0012543.1 mouse_genomes_project 4 74284371 74285752 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007915.1 MGP_C3HHeJ_G0006452.1 mouse_genomes_project 4 137098936 137100522 - Gm27022 lincRNA lincRNA MGP_C3HHeJ_T0069572.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479750 158497020 + MGP_C3HHeJ_P0069572 9430015G10Rik protein_coding protein_coding MGP_C3HHeJ_T0069573.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479753 158497020 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069574.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479766 158497018 + MGP_C3HHeJ_P0069574 9430015G10Rik protein_coding protein_coding MGP_C3HHeJ_T0069575.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479767 158495974 + MGP_C3HHeJ_P0069575 9430015G10Rik protein_coding protein_coding MGP_C3HHeJ_T0069576.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479787 158491932 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069577.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479798 158492166 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069578.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158479807 158486347 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0069579.1 MGP_C3HHeJ_G0028948.1 mouse_genomes_project 4 158483662 158489271 + 9430015G10Rik protein_coding processed_transcript MGP_C3HHeJ_T0068299.1 MGP_C3HHeJ_G0028655.1 mouse_genomes_project 4 136733801 136753835 - MGP_C3HHeJ_P0068299 Tceb3 protein_coding protein_coding MGP_C3HHeJ_T0010538.1 MGP_C3HHeJ_G0008671.1 mouse_genomes_project 4 129506518 129506600 - Gm22994 miRNA miRNA MGP_C3HHeJ_T0014617.1 MGP_C3HHeJ_G0012721.1 mouse_genomes_project 4 135104060 135104813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097903.1 MGP_C3HHeJ_G0036115.1 mouse_genomes_project 4 58317521 58317993 + pseudogene pseudogene MGP_C3HHeJ_T0068787.1 MGP_C3HHeJ_G0028791.1 mouse_genomes_project 4 145902431 145921644 - MGP_C3HHeJ_P0068787 Pramef12 protein_coding protein_coding MGP_C3HHeJ_T0068788.1 MGP_C3HHeJ_G0028791.1 mouse_genomes_project 4 145907175 145921597 - MGP_C3HHeJ_P0068788 Pramef12 protein_coding protein_coding MGP_C3HHeJ_T0068961.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151196522 151336279 - MGP_C3HHeJ_P0068961 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068962.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151198221 151206429 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068963.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151199066 151221233 - MGP_C3HHeJ_P0068963 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068964.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151200439 151336093 - MGP_C3HHeJ_P0068964 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068965.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151230243 151234626 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068966.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151230642 151238318 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068967.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151239498 151248090 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068968.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151258200 151336210 - MGP_C3HHeJ_P0068968 Kif1b protein_coding protein_coding MGP_C3HHeJ_T0068969.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151261470 151336123 - MGP_C3HHeJ_P0068969 Kif1b protein_coding unknown_likely_coding MGP_C3HHeJ_T0068970.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151270538 151273160 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068971.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151289648 151336280 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0068972.1 MGP_C3HHeJ_G0028839.1 mouse_genomes_project 4 151318839 151336251 - Kif1b protein_coding retained_intron MGP_C3HHeJ_T0066142.1 MGP_C3HHeJ_G0028184.1 mouse_genomes_project 4 100979429 101059039 + MGP_C3HHeJ_P0066142 Raver2 protein_coding protein_coding MGP_C3HHeJ_T0066143.1 MGP_C3HHeJ_G0028184.1 mouse_genomes_project 4 100979429 101042027 + MGP_C3HHeJ_P0066143 Raver2 protein_coding protein_coding MGP_C3HHeJ_T0066144.1 MGP_C3HHeJ_G0028184.1 mouse_genomes_project 4 100979925 101014480 + Raver2 protein_coding processed_transcript MGP_C3HHeJ_T0067419.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126219971 126266916 - MGP_C3HHeJ_P0067419 Thrap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067420.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126221019 126230942 - MGP_C3HHeJ_P0067420 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067421.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126221033 126222955 - Thrap3 protein_coding processed_transcript MGP_C3HHeJ_T0067422.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126222526 126229009 - MGP_C3HHeJ_P0067422 Thrap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067423.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126228324 126266849 - MGP_C3HHeJ_P0067423 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067424.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126230860 126234022 - MGP_C3HHeJ_P0067424 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067425.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126234269 126266872 - Thrap3 protein_coding retained_intron MGP_C3HHeJ_T0067426.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126234286 126235646 - Thrap3 protein_coding processed_transcript MGP_C3HHeJ_T0067427.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126236061 126256675 - MGP_C3HHeJ_P0067427 Thrap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067428.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126239208 126265401 - MGP_C3HHeJ_P0067428 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067429.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126239217 126266849 - MGP_C3HHeJ_P0067429 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067430.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248360 126266883 - Thrap3 protein_coding retained_intron MGP_C3HHeJ_T0067431.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248541 126266919 - Thrap3 protein_coding retained_intron MGP_C3HHeJ_T0067432.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248779 126266907 - MGP_C3HHeJ_P0067432 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067433.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248785 126266636 - MGP_C3HHeJ_P0067433 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067434.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126248791 126266650 - MGP_C3HHeJ_P0067434 Thrap3 protein_coding protein_coding MGP_C3HHeJ_T0067435.1 MGP_C3HHeJ_G0028470.1 mouse_genomes_project 4 126256202 126266930 - Thrap3 protein_coding processed_transcript MGP_C3HHeJ_T0099326.1 MGP_C3HHeJ_G0037520.1 mouse_genomes_project 4 8051420 8051575 - Gm22940 snRNA snRNA MGP_C3HHeJ_T0004435.1 MGP_C3HHeJ_G0003850.1 mouse_genomes_project 4 115407267 115411169 + Cyp4x1os antisense antisense MGP_C3HHeJ_T0099358.1 MGP_C3HHeJ_G0037552.1 mouse_genomes_project 4 82665928 82666035 - Gm23412 snRNA snRNA MGP_C3HHeJ_T0100654.1 MGP_C3HHeJ_G0038848.1 mouse_genomes_project 4 103592648 103592777 - Gm25877 snoRNA snoRNA MGP_C3HHeJ_T0014432.1 MGP_C3HHeJ_G0012536.1 mouse_genomes_project 4 72526532 72527707 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010522.1 MGP_C3HHeJ_G0008655.1 mouse_genomes_project 4 99588134 99588223 + Gm23366 miRNA miRNA MGP_C3HHeJ_T0014664.1 MGP_C3HHeJ_G0012768.1 mouse_genomes_project 4 157828006 157828397 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014628.1 MGP_C3HHeJ_G0012732.1 mouse_genomes_project 4 137357980 137358469 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004375.1 MGP_C3HHeJ_G0003808.1 mouse_genomes_project 4 43227415 43235816 - Gm12679 antisense antisense MGP_C3HHeJ_T0067436.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126318847 - MGP_C3HHeJ_P0067436 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067437.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126334945 - MGP_C3HHeJ_P0067437 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067438.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126334951 - MGP_C3HHeJ_P0067438 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067439.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126309897 126335011 - MGP_C3HHeJ_P0067439 Map7d1 protein_coding protein_coding MGP_C3HHeJ_T0067440.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126310693 126311279 - Map7d1 protein_coding retained_intron MGP_C3HHeJ_T0067441.1 MGP_C3HHeJ_G0028471.1 mouse_genomes_project 4 126311350 126312507 - Map7d1 protein_coding retained_intron MGP_C3HHeJ_T0064734.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38975723 38989519 - MGP_C3HHeJ_P0064734 Aqp7 protein_coding protein_coding MGP_C3HHeJ_T0064735.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38975723 38992210 - MGP_C3HHeJ_P0064735 Aqp7 protein_coding protein_coding MGP_C3HHeJ_T0064736.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38978174 38985052 - Aqp7 protein_coding processed_transcript MGP_C3HHeJ_T0064737.1 MGP_C3HHeJ_G0027851.1 mouse_genomes_project 4 38978416 38979607 - Aqp7 protein_coding processed_transcript MGP_C3HHeJ_T0101992.1 MGP_C3HHeJ_G0039957.1 mouse_genomes_project 4 88193458 88195146 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066079.1 MGP_C3HHeJ_G0028168.1 mouse_genomes_project 4 98609622 98681244 - MGP_C3HHeJ_P0066079 Kank4 protein_coding protein_coding MGP_C3HHeJ_T0066080.1 MGP_C3HHeJ_G0028168.1 mouse_genomes_project 4 98611029 98627437 - Kank4 protein_coding processed_transcript MGP_C3HHeJ_T0065370.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48153259 48356293 - MGP_C3HHeJ_P0065370 Grin3a protein_coding protein_coding MGP_C3HHeJ_T0065371.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48153259 48356293 - MGP_C3HHeJ_P0065371 Grin3a protein_coding protein_coding MGP_C3HHeJ_T0065373.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48198002 48213064 - Grin3a protein_coding processed_transcript MGP_C3HHeJ_T0065374.1 MGP_C3HHeJ_G0027987.1 mouse_genomes_project 4 48270686 48356488 - Grin3a protein_coding processed_transcript MGP_C3HHeJ_T0010516.1 MGP_C3HHeJ_G0008649.1 mouse_genomes_project 4 87041409 87041465 + Gm23154 miRNA miRNA MGP_C3HHeJ_T0001376.1 MGP_C3HHeJ_G0001307.1 mouse_genomes_project 4 42913227 42914795 + TEC TEC MGP_C3HHeJ_T0007759.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51812134 51821007 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0007760.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51812671 51813326 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0007761.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51813233 51816267 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0007762.1 MGP_C3HHeJ_G0006340.1 mouse_genomes_project 4 51813510 51814608 - AI427809 lincRNA lincRNA MGP_C3HHeJ_T0066580.1 MGP_C3HHeJ_G0028267.1 mouse_genomes_project 4 109649985 109679048 - MGP_C3HHeJ_P0066580 Rnf11 protein_coding protein_coding MGP_C3HHeJ_T0066581.1 MGP_C3HHeJ_G0028267.1 mouse_genomes_project 4 109651786 109679355 - MGP_C3HHeJ_P0066581 Rnf11 protein_coding protein_coding MGP_C3HHeJ_T0066582.1 MGP_C3HHeJ_G0028267.1 mouse_genomes_project 4 109653171 109688958 - MGP_C3HHeJ_P0066582 Rnf11 protein_coding protein_coding MGP_C3HHeJ_T0004374.1 MGP_C3HHeJ_G0003807.1 mouse_genomes_project 4 43224605 43227936 + Gm12493 antisense antisense MGP_C3HHeJ_T0065723.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75091033 75617544 - MGP_C3HHeJ_P0065723 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065724.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75091034 75293156 - MGP_C3HHeJ_P0065724 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065725.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099170 75765664 - MGP_C3HHeJ_P0065725 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065726.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065726 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065727.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065727 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065728.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065728 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065729.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065729 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065730.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75408949 - MGP_C3HHeJ_P0065730 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065731.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75099322 75508855 - MGP_C3HHeJ_P0065731 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065732.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75240174 75259834 - Ptprd protein_coding retained_intron MGP_C3HHeJ_T0065733.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75242298 75244444 - MGP_C3HHeJ_P0065733 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065734.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75257801 75265572 - MGP_C3HHeJ_P0065734 Ptprd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065735.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75292431 75293417 - MGP_C3HHeJ_P0065735 Ptprd protein_coding protein_coding MGP_C3HHeJ_T0065736.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75299227 77478121 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065737.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75300203 75408949 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065738.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75762689 77478093 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065739.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 75764915 77477965 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065740.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 76385731 77477965 - Ptprd protein_coding retained_intron MGP_C3HHeJ_T0065741.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 76552974 77478187 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065742.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 77161023 77478078 - Ptprd protein_coding processed_transcript MGP_C3HHeJ_T0065743.1 MGP_C3HHeJ_G0028087.1 mouse_genomes_project 4 77168715 77478069 - Ptprd protein_coding retained_intron MGP_C3HHeJ_T0100617.1 MGP_C3HHeJ_G0038811.1 mouse_genomes_project 4 39168834 39168915 - Gm24837 snoRNA snoRNA MGP_C3HHeJ_T0065944.1 MGP_C3HHeJ_G0028135.1 mouse_genomes_project 4 89005070 89009816 - MGP_C3HHeJ_P0065944 Cdkn2b protein_coding protein_coding MGP_C3HHeJ_T0010532.1 MGP_C3HHeJ_G0008665.1 mouse_genomes_project 4 121354096 121354188 + Mir30f miRNA miRNA MGP_C3HHeJ_T0068695.1 MGP_C3HHeJ_G0028749.1 mouse_genomes_project 4 142772924 142779857 - MGP_C3HHeJ_P0068695 Tmem82 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068696.1 MGP_C3HHeJ_G0028749.1 mouse_genomes_project 4 142773784 142777761 - MGP_C3HHeJ_P0068696 Tmem82 protein_coding protein_coding MGP_C3HHeJ_T0068697.1 MGP_C3HHeJ_G0028749.1 mouse_genomes_project 4 142773788 142777504 - Tmem82 protein_coding retained_intron MGP_C3HHeJ_T0065566.1 MGP_C3HHeJ_G0028044.1 mouse_genomes_project 4 60967040 60971272 - MGP_C3HHeJ_P0065566 Mup3 protein_coding protein_coding MGP_C3HHeJ_T0068708.1 MGP_C3HHeJ_G0028754.1 mouse_genomes_project 4 142918404 142931892 + MGP_C3HHeJ_P0068708 Agmat protein_coding protein_coding MGP_C3HHeJ_T0065458.1 MGP_C3HHeJ_G0028015.1 mouse_genomes_project 4 55589997 55625479 - MGP_C3HHeJ_P0065458 Frrs1l protein_coding protein_coding MGP_C3HHeJ_T0065459.1 MGP_C3HHeJ_G0028015.1 mouse_genomes_project 4 55592606 55625224 - MGP_C3HHeJ_P0065459 Frrs1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067172.1 MGP_C3HHeJ_G0028402.1 mouse_genomes_project 4 120199433 120202286 - MGP_C3HHeJ_P0067172 Guca2b protein_coding protein_coding MGP_C3HHeJ_T0067173.1 MGP_C3HHeJ_G0028402.1 mouse_genomes_project 4 120199433 120202459 - MGP_C3HHeJ_P0067173 Guca2b protein_coding protein_coding MGP_C3HHeJ_T0069357.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365129 157370547 + MGP_C3HHeJ_P0069357 Pex10 protein_coding protein_coding MGP_C3HHeJ_T0069358.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365167 157366995 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0069359.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365170 157370295 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0069360.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365172 157366137 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0069361.1 MGP_C3HHeJ_G0028908.1 mouse_genomes_project 4 157365172 157367230 + Pex10 protein_coding processed_transcript MGP_C3HHeJ_T0004479.1 MGP_C3HHeJ_G0003886.1 mouse_genomes_project 4 135800022 135800887 - Gm16224 antisense antisense MGP_C3HHeJ_T0068785.1 MGP_C3HHeJ_G0028789.1 mouse_genomes_project 4 145856687 145859180 + MGP_C3HHeJ_P0068785 Gm13119 protein_coding protein_coding MGP_C3HHeJ_T0004355.1 MGP_C3HHeJ_G0003791.1 mouse_genomes_project 4 17370197 17374309 + Gm11872 antisense antisense MGP_C3HHeJ_T0065529.1 MGP_C3HHeJ_G0028033.1 mouse_genomes_project 4 57709188 57716564 + MGP_C3HHeJ_P0065529 Gng10 protein_coding protein_coding MGP_C3HHeJ_T0065530.1 MGP_C3HHeJ_G0028033.1 mouse_genomes_project 4 57709872 57716564 + Gng10 protein_coding processed_transcript MGP_C3HHeJ_T0099383.1 MGP_C3HHeJ_G0037577.1 mouse_genomes_project 4 117684489 117684605 + Gm23287 snRNA snRNA MGP_C3HHeJ_T0014615.1 MGP_C3HHeJ_G0012719.1 mouse_genomes_project 4 134778385 134778706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014546.1 MGP_C3HHeJ_G0012650.1 mouse_genomes_project 4 115685440 115685813 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067370.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125031175 125052823 + MGP_C3HHeJ_P0067370 Gnl2 protein_coding protein_coding MGP_C3HHeJ_T0067371.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125044486 125072896 + MGP_C3HHeJ_P0067371 Gnl2 protein_coding protein_coding MGP_C3HHeJ_T0067372.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125044552 125058328 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067373.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125058041 125060004 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067374.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125060315 125063348 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067375.1 MGP_C3HHeJ_G0028457.1 mouse_genomes_project 4 125070670 125072900 + Gnl2 protein_coding processed_transcript MGP_C3HHeJ_T0067042.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933658 118938177 + MGP_C3HHeJ_P0067042 Elovl1 protein_coding protein_coding MGP_C3HHeJ_T0067043.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933683 118934384 + Elovl1 protein_coding processed_transcript MGP_C3HHeJ_T0067044.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933727 118937504 + Elovl1 protein_coding processed_transcript MGP_C3HHeJ_T0067045.1 MGP_C3HHeJ_G0028363.1 mouse_genomes_project 4 118933761 118936628 + Elovl1 protein_coding processed_transcript MGP_C3HHeJ_T0007784.1 MGP_C3HHeJ_G0006359.1 mouse_genomes_project 4 63025949 63034212 + Gm11216 lincRNA lincRNA MGP_C3HHeJ_T0098251.1 MGP_C3HHeJ_G0036463.1 mouse_genomes_project 4 41672356 41672627 - Rmrp ribozyme ribozyme MGP_C3HHeJ_T0066918.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610282 117612698 - MGP_C3HHeJ_P0066918 Rps8 protein_coding protein_coding MGP_C3HHeJ_T0066919.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610289 117610952 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066920.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610827 117611636 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066921.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610846 117612539 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066922.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117610964 117612524 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0066923.1 MGP_C3HHeJ_G0028342.1 mouse_genomes_project 4 117611140 117612527 - Rps8 protein_coding retained_intron MGP_C3HHeJ_T0064226.1 MGP_C3HHeJ_G0027728.1 mouse_genomes_project 4 681929 696109 - MGP_C3HHeJ_P0064226 Sdr16c5 protein_coding protein_coding MGP_C3HHeJ_T0064227.1 MGP_C3HHeJ_G0027728.1 mouse_genomes_project 4 688786 693067 - Sdr16c5 protein_coding processed_transcript MGP_C3HHeJ_T0001391.1 MGP_C3HHeJ_G0001322.1 mouse_genomes_project 4 142359537 142360812 - TEC TEC MGP_C3HHeJ_T0001392.1 MGP_C3HHeJ_G0001322.1 mouse_genomes_project 4 142359543 142360812 - TEC TEC MGP_C3HHeJ_T0068503.1 MGP_C3HHeJ_G0028705.1 mouse_genomes_project 4 139940906 139942155 + MGP_C3HHeJ_P0068503 Rnf186 protein_coding protein_coding MGP_C3HHeJ_T0068078.1 MGP_C3HHeJ_G0028605.1 mouse_genomes_project 4 134621888 134627225 + MGP_C3HHeJ_P0068078 Zfp683 protein_coding protein_coding MGP_C3HHeJ_T0067329.1 MGP_C3HHeJ_G0028446.1 mouse_genomes_project 4 124678412 124696660 - MGP_C3HHeJ_P0067329 Utp11l protein_coding protein_coding MGP_C3HHeJ_T0067330.1 MGP_C3HHeJ_G0028446.1 mouse_genomes_project 4 124679037 124696594 - Utp11l protein_coding processed_transcript MGP_C3HHeJ_T0007833.1 MGP_C3HHeJ_G0006400.1 mouse_genomes_project 4 106561468 106568988 - Tmem61 lincRNA lincRNA MGP_C3HHeJ_T0007834.1 MGP_C3HHeJ_G0006400.1 mouse_genomes_project 4 106561700 106565759 - Tmem61 lincRNA lincRNA MGP_C3HHeJ_T0067701.1 MGP_C3HHeJ_G0028528.1 mouse_genomes_project 4 129862172 129868077 - MGP_C3HHeJ_P0067701 Dcdc2b protein_coding protein_coding MGP_C3HHeJ_T0067702.1 MGP_C3HHeJ_G0028528.1 mouse_genomes_project 4 129862370 129863090 - Dcdc2b protein_coding retained_intron MGP_C3HHeJ_T0067703.1 MGP_C3HHeJ_G0028528.1 mouse_genomes_project 4 129862589 129868074 - MGP_C3HHeJ_P0067703 Dcdc2b protein_coding protein_coding MGP_C3HHeJ_T0065605.1 MGP_C3HHeJ_G0028056.1 mouse_genomes_project 4 61428741 61431162 - MGP_C3HHeJ_P0065605 Pole3 protein_coding protein_coding MGP_C3HHeJ_T0065606.1 MGP_C3HHeJ_G0028056.1 mouse_genomes_project 4 61430428 61431132 - Pole3 protein_coding retained_intron MGP_C3HHeJ_T0064755.1 MGP_C3HHeJ_G0027856.1 mouse_genomes_project 4 39256559 39280115 - MGP_C3HHeJ_P0064755 Dcaf12 protein_coding protein_coding MGP_C3HHeJ_T0102020.1 MGP_C3HHeJ_G0039985.1 mouse_genomes_project 4 122652758 122670862 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066646.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112174341 112184705 + MGP_C3HHeJ_P0066646 Skint7 protein_coding protein_coding MGP_C3HHeJ_T0066647.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112174345 112189784 + MGP_C3HHeJ_P0066647 Skint7 protein_coding protein_coding MGP_C3HHeJ_T0066648.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112174345 112182775 + MGP_C3HHeJ_P0066648 Skint7 protein_coding protein_coding MGP_C3HHeJ_T0066649.1 MGP_C3HHeJ_G0028278.1 mouse_genomes_project 4 112183616 112186150 + Skint7 protein_coding retained_intron MGP_C3HHeJ_T0065093.1 MGP_C3HHeJ_G0027924.1 mouse_genomes_project 4 42015273 42016230 - MGP_C3HHeJ_P0065093 Olfr156 protein_coding protein_coding MGP_C3HHeJ_T0014583.1 MGP_C3HHeJ_G0012687.1 mouse_genomes_project 4 122811717 122811965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065024.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694189 41704456 - Tpm2 protein_coding processed_transcript MGP_C3HHeJ_T0065025.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694189 41704613 - MGP_C3HHeJ_P0065025 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065026.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694189 41704482 - MGP_C3HHeJ_P0065026 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065027.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41694190 41704406 - MGP_C3HHeJ_P0065027 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065028.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41695160 41700690 - Tpm2 protein_coding processed_transcript MGP_C3HHeJ_T0065029.1 MGP_C3HHeJ_G0027909.1 mouse_genomes_project 4 41700688 41704783 - MGP_C3HHeJ_P0065029 Tpm2 protein_coding protein_coding MGP_C3HHeJ_T0065444.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55433630 55488702 - MGP_C3HHeJ_P0065444 Ctnnal1 protein_coding protein_coding MGP_C3HHeJ_T0065445.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55434835 55437014 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065446.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55439682 55440350 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065447.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55446717 55462341 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065448.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55448662 55488682 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065449.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55448925 55452517 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065450.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55452188 55461297 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065451.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55464448 55488668 - MGP_C3HHeJ_P0065451 Ctnnal1 protein_coding protein_coding MGP_C3HHeJ_T0065452.1 MGP_C3HHeJ_G0028013.1 mouse_genomes_project 4 55468416 55470209 - Ctnnal1 protein_coding processed_transcript MGP_C3HHeJ_T0065103.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42213553 42243842 + MGP_C3HHeJ_P0065103 Clta protein_coding protein_coding MGP_C3HHeJ_T0065104.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223633 42243842 + MGP_C3HHeJ_P0065104 Clta protein_coding protein_coding MGP_C3HHeJ_T0065105.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223638 42243841 + MGP_C3HHeJ_P0065105 Clta protein_coding protein_coding MGP_C3HHeJ_T0065106.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223673 42243842 + MGP_C3HHeJ_P0065106 Clta protein_coding protein_coding MGP_C3HHeJ_T0065107.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223673 42243842 + MGP_C3HHeJ_P0065107 Clta protein_coding protein_coding MGP_C3HHeJ_T0065108.1 MGP_C3HHeJ_G0027930.1 mouse_genomes_project 4 42223681 42243842 + MGP_C3HHeJ_P0065108 Clta protein_coding protein_coding MGP_C3HHeJ_T0007831.1 MGP_C3HHeJ_G0006398.1 mouse_genomes_project 4 106139206 106159048 - Gm12729 lincRNA lincRNA MGP_C3HHeJ_T0010562.1 MGP_C3HHeJ_G0008695.1 mouse_genomes_project 4 141821093 141821157 + Gm25951 miRNA miRNA MGP_C3HHeJ_T0064517.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21740990 21933542 - MGP_C3HHeJ_P0064517 Klhl32 protein_coding protein_coding MGP_C3HHeJ_T0064518.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21740990 21991317 - MGP_C3HHeJ_P0064518 Klhl32 protein_coding protein_coding MGP_C3HHeJ_T0064519.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21744434 21877921 - MGP_C3HHeJ_P0064519 Klhl32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064520.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21744523 21991124 - MGP_C3HHeJ_P0064520 Klhl32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064521.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21745741 21991279 - MGP_C3HHeJ_P0064521 Klhl32 protein_coding protein_coding MGP_C3HHeJ_T0064522.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21778926 21991124 - Klhl32 protein_coding retained_intron MGP_C3HHeJ_T0064523.1 MGP_C3HHeJ_G0027798.1 mouse_genomes_project 4 21779468 21804746 - Klhl32 protein_coding processed_transcript MGP_C3HHeJ_T0102003.1 MGP_C3HHeJ_G0039968.1 mouse_genomes_project 4 112844965 112866367 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067795.1 MGP_C3HHeJ_G0028545.1 mouse_genomes_project 4 130620940 130627809 + MGP_C3HHeJ_P0067795 Fabp3 protein_coding protein_coding MGP_C3HHeJ_T0014569.1 MGP_C3HHeJ_G0012673.1 mouse_genomes_project 4 120044493 120045175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067794.1 MGP_C3HHeJ_G0028544.1 mouse_genomes_project 4 130620507 130621020 - MGP_C3HHeJ_P0067794 Gm10570 protein_coding protein_coding MGP_C3HHeJ_T0065257.1 MGP_C3HHeJ_G0027956.1 mouse_genomes_project 4 44708829 44723224 - MGP_C3HHeJ_P0065257 Trmo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065258.1 MGP_C3HHeJ_G0027956.1 mouse_genomes_project 4 44709303 44723229 - MGP_C3HHeJ_P0065258 Trmo protein_coding protein_coding MGP_C3HHeJ_T0065259.1 MGP_C3HHeJ_G0027956.1 mouse_genomes_project 4 44713109 44723243 - MGP_C3HHeJ_P0065259 Trmo protein_coding protein_coding MGP_C3HHeJ_T0067411.1 MGP_C3HHeJ_G0028468.1 mouse_genomes_project 4 126203223 126205354 + MGP_C3HHeJ_P0067411 Eva1b protein_coding protein_coding MGP_C3HHeJ_T0067412.1 MGP_C3HHeJ_G0028468.1 mouse_genomes_project 4 126203482 126205355 + MGP_C3HHeJ_P0067412 Eva1b protein_coding protein_coding MGP_C3HHeJ_T0067413.1 MGP_C3HHeJ_G0028468.1 mouse_genomes_project 4 126204011 126205345 + MGP_C3HHeJ_P0067413 Eva1b protein_coding protein_coding MGP_C3HHeJ_T0014358.1 MGP_C3HHeJ_G0012462.1 mouse_genomes_project 4 39124614 39125573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065375.1 MGP_C3HHeJ_G0027989.1 mouse_genomes_project 4 49734489 49748962 + MGP_C3HHeJ_P0065375 Cylc2 protein_coding protein_coding MGP_C3HHeJ_T0068137.1 MGP_C3HHeJ_G0028616.1 mouse_genomes_project 4 134835531 134838630 + MGP_C3HHeJ_P0068137 Gm30191 protein_coding protein_coding MGP_C3HHeJ_T0064233.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293710 2447790 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0064234.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293741 2450509 + MGP_C3HHeJ_P0064234 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064235.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293745 2382494 + Fam110b protein_coding retained_intron MGP_C3HHeJ_T0064236.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293810 2447902 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0064237.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2293855 2760081 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0064238.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2372810 2450509 + MGP_C3HHeJ_P0064238 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064239.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2420329 2448253 + MGP_C3HHeJ_P0064239 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064240.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2420329 2449354 + MGP_C3HHeJ_P0064240 Fam110b protein_coding protein_coding MGP_C3HHeJ_T0064241.1 MGP_C3HHeJ_G0027732.1 mouse_genomes_project 4 2447491 2447939 + Fam110b protein_coding processed_transcript MGP_C3HHeJ_T0099336.1 MGP_C3HHeJ_G0037530.1 mouse_genomes_project 4 31633541 31633649 + Gm25623 snRNA snRNA MGP_C3HHeJ_T0067075.1 MGP_C3HHeJ_G0028377.1 mouse_genomes_project 4 119318743 119319884 - MGP_C3HHeJ_P0067075 Olfr1335 protein_coding protein_coding MGP_C3HHeJ_T0066126.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769536 99771919 + MGP_C3HHeJ_P0066126 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066127.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769778 99771919 + MGP_C3HHeJ_P0066127 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066128.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769838 99771919 + MGP_C3HHeJ_P0066128 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066129.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99769851 99821615 + MGP_C3HHeJ_P0066129 Efcab7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066130.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99771732 99821615 + MGP_C3HHeJ_P0066130 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0066131.1 MGP_C3HHeJ_G0028178.1 mouse_genomes_project 4 99818584 99822651 + MGP_C3HHeJ_P0066131 Efcab7 protein_coding protein_coding MGP_C3HHeJ_T0010541.1 MGP_C3HHeJ_G0008674.1 mouse_genomes_project 4 130031108 130031234 - Gm28017 miRNA miRNA MGP_C3HHeJ_T0001390.1 MGP_C3HHeJ_G0001321.1 mouse_genomes_project 4 141394730 141397377 - TEC TEC MGP_C3HHeJ_T0068566.1 MGP_C3HHeJ_G0028720.1 mouse_genomes_project 4 140763050 140880677 - MGP_C3HHeJ_P0068566 Pax7 protein_coding protein_coding MGP_C3HHeJ_T0068567.1 MGP_C3HHeJ_G0028720.1 mouse_genomes_project 4 140766713 140879029 - MGP_C3HHeJ_P0068567 Pax7 protein_coding protein_coding MGP_C3HHeJ_T0017858.1 MGP_C3HHeJ_G0015330.1 mouse_genomes_project 4 116999073 117008314 - C530005A16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100678.1 MGP_C3HHeJ_G0038872.1 mouse_genomes_project 4 132742092 132742222 + Snora61 snoRNA snoRNA MGP_C3HHeJ_T0014282.1 MGP_C3HHeJ_G0012386.1 mouse_genomes_project 4 18045967 18047028 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068150.1 MGP_C3HHeJ_G0028620.1 mouse_genomes_project 4 134928162 134928491 - MGP_C3HHeJ_P0068150 Gm8186 protein_coding protein_coding MGP_C3HHeJ_T0064228.1 MGP_C3HHeJ_G0027729.1 mouse_genomes_project 4 728597 752128 - MGP_C3HHeJ_P0064228 Sdr16c6 protein_coding protein_coding MGP_C3HHeJ_T0064229.1 MGP_C3HHeJ_G0027729.1 mouse_genomes_project 4 728599 752719 - MGP_C3HHeJ_P0064229 Sdr16c6 protein_coding protein_coding MGP_C3HHeJ_T0014494.1 MGP_C3HHeJ_G0012598.1 mouse_genomes_project 4 97367576 97368243 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068015.1 MGP_C3HHeJ_G0028590.1 mouse_genomes_project 4 133997336 134005191 + MGP_C3HHeJ_P0068015 Fam46b protein_coding protein_coding MGP_C3HHeJ_T0014507.1 MGP_C3HHeJ_G0012611.1 mouse_genomes_project 4 100499669 100500126 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014247.1 MGP_C3HHeJ_G0012351.1 mouse_genomes_project 4 8459183 8460036 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014589.1 MGP_C3HHeJ_G0012693.1 mouse_genomes_project 4 123873343 123873891 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007763.1 MGP_C3HHeJ_G0006341.1 mouse_genomes_project 4 52729082 52729580 - lincRNA lincRNA MGP_C3HHeJ_T0066585.1 MGP_C3HHeJ_G0028269.1 mouse_genomes_project 4 109873726 109878200 - MGP_C3HHeJ_P0066585 Cdkn2c protein_coding protein_coding MGP_C3HHeJ_T0066586.1 MGP_C3HHeJ_G0028269.1 mouse_genomes_project 4 109873726 109880017 - MGP_C3HHeJ_P0066586 Cdkn2c protein_coding protein_coding MGP_C3HHeJ_T0014663.1 MGP_C3HHeJ_G0012767.1 mouse_genomes_project 4 156506847 156508559 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004420.1 MGP_C3HHeJ_G0003841.1 mouse_genomes_project 4 107116669 107121197 - Gm12786 antisense antisense MGP_C3HHeJ_T0065372.1 MGP_C3HHeJ_G0027988.1 mouse_genomes_project 4 48170407 48173685 - MGP_C3HHeJ_P0065372 Ppp3r2 protein_coding protein_coding MGP_C3HHeJ_T0064264.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3351904 3665220 - MGP_C3HHeJ_P0064264 Tox protein_coding protein_coding MGP_C3HHeJ_T0064265.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3355781 3357087 - Tox protein_coding processed_transcript MGP_C3HHeJ_T0064266.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3408044 3665978 - Tox protein_coding retained_intron MGP_C3HHeJ_T0064267.1 MGP_C3HHeJ_G0027737.1 mouse_genomes_project 4 3494304 3663931 - Tox protein_coding retained_intron MGP_C3HHeJ_T0069190.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154502194 154513784 - MGP_C3HHeJ_P0069190 Rnf207 protein_coding protein_coding MGP_C3HHeJ_T0069191.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154502486 154504209 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069192.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154506559 154513634 - MGP_C3HHeJ_P0069192 Rnf207 protein_coding protein_coding MGP_C3HHeJ_T0069193.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154506732 154508579 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069194.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154506891 154508524 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069195.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154508009 154508576 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069196.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154508568 154513657 - MGP_C3HHeJ_P0069196 Rnf207 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069197.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154508578 154511141 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069198.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154509728 154514169 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069199.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154509730 154513795 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069200.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154510061 154513801 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0069201.1 MGP_C3HHeJ_G0028881.1 mouse_genomes_project 4 154510636 154511504 - Rnf207 protein_coding retained_intron MGP_C3HHeJ_T0014348.1 MGP_C3HHeJ_G0012452.1 mouse_genomes_project 4 37184147 37184908 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067318.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123875825 123882014 + MGP_C3HHeJ_P0067318 Mycbp protein_coding protein_coding MGP_C3HHeJ_T0067319.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123875915 123882075 + MGP_C3HHeJ_P0067319 Mycbp protein_coding protein_coding MGP_C3HHeJ_T0067320.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123875952 123880663 + Mycbp protein_coding processed_transcript MGP_C3HHeJ_T0067321.1 MGP_C3HHeJ_G0028442.1 mouse_genomes_project 4 123876047 123882180 + Mycbp protein_coding processed_transcript MGP_C3HHeJ_T0014448.1 MGP_C3HHeJ_G0012552.1 mouse_genomes_project 4 76012554 76013591 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014657.1 MGP_C3HHeJ_G0012761.1 mouse_genomes_project 4 152983575 152983970 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017836.1 MGP_C3HHeJ_G0015315.1 mouse_genomes_project 4 88783719 88812701 - Gm12602 processed_transcript processed_transcript MGP_C3HHeJ_T0017837.1 MGP_C3HHeJ_G0015315.1 mouse_genomes_project 4 88807121 88812656 - Gm12602 processed_transcript processed_transcript MGP_C3HHeJ_T0067328.1 MGP_C3HHeJ_G0028445.1 mouse_genomes_project 4 124609510 124610383 - MGP_C3HHeJ_P0067328 3100002H09Rik protein_coding protein_coding MGP_C3HHeJ_T0102026.1 MGP_C3HHeJ_G0039991.1 mouse_genomes_project 4 145330967 145334470 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007815.1 MGP_C3HHeJ_G0006385.1 mouse_genomes_project 4 95161821 95162634 - Gm29064 lincRNA lincRNA MGP_C3HHeJ_T0099378.1 MGP_C3HHeJ_G0037572.1 mouse_genomes_project 4 117089855 117089965 + Gm25137 snRNA snRNA MGP_C3HHeJ_T0100626.1 MGP_C3HHeJ_G0038820.1 mouse_genomes_project 4 52465937 52466062 + Gm23745 snoRNA snoRNA MGP_C3HHeJ_T0004392.1 MGP_C3HHeJ_G0003823.1 mouse_genomes_project 4 73373446 73374837 - A230083N12Rik antisense antisense MGP_C3HHeJ_T0098472.1 MGP_C3HHeJ_G0036677.1 mouse_genomes_project 4 83147499 83147980 + Gm26968 sense_intronic sense_intronic MGP_C3HHeJ_T0067084.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119635842 119665081 + MGP_C3HHeJ_P0067084 Slc2a1 protein_coding protein_coding MGP_C3HHeJ_T0067085.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119635935 119659690 + MGP_C3HHeJ_P0067085 Slc2a1 protein_coding protein_coding MGP_C3HHeJ_T0067086.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119635990 119659662 + MGP_C3HHeJ_P0067086 Slc2a1 protein_coding protein_coding MGP_C3HHeJ_T0067087.1 MGP_C3HHeJ_G0028385.1 mouse_genomes_project 4 119636045 119664423 + MGP_C3HHeJ_P0067087 Slc2a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065431.1 MGP_C3HHeJ_G0028008.1 mouse_genomes_project 4 55362120 55363559 - MGP_C3HHeJ_P0065431 Actl7b protein_coding protein_coding MGP_C3HHeJ_T0064604.1 MGP_C3HHeJ_G0027820.1 mouse_genomes_project 4 30726321 30729409 - MGP_C3HHeJ_P0064604 Pnrc1 protein_coding protein_coding MGP_C3HHeJ_T0064605.1 MGP_C3HHeJ_G0027820.1 mouse_genomes_project 4 30726902 30728474 - Pnrc1 protein_coding processed_transcript MGP_C3HHeJ_T0064606.1 MGP_C3HHeJ_G0027820.1 mouse_genomes_project 4 30726910 30775608 - Pnrc1 protein_coding processed_transcript MGP_C3HHeJ_T0067932.1 MGP_C3HHeJ_G0028571.1 mouse_genomes_project 4 133030125 133048383 + MGP_C3HHeJ_P0067932 Ptafr protein_coding protein_coding MGP_C3HHeJ_T0014616.1 MGP_C3HHeJ_G0012720.1 mouse_genomes_project 4 134924585 134924846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068534.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140342877 140345459 - Mrto4 protein_coding processed_transcript MGP_C3HHeJ_T0068535.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140342877 140348405 - MGP_C3HHeJ_P0068535 Mrto4 protein_coding protein_coding MGP_C3HHeJ_T0068536.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140342887 140348127 - MGP_C3HHeJ_P0068536 Mrto4 protein_coding protein_coding MGP_C3HHeJ_T0068537.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140343969 140345477 - Mrto4 protein_coding retained_intron MGP_C3HHeJ_T0068538.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140344570 140348140 - MGP_C3HHeJ_P0068538 Mrto4 protein_coding protein_coding MGP_C3HHeJ_T0068539.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140344632 140348362 - Mrto4 protein_coding retained_intron MGP_C3HHeJ_T0068540.1 MGP_C3HHeJ_G0028713.1 mouse_genomes_project 4 140345730 140348139 - Mrto4 protein_coding retained_intron MGP_C3HHeJ_T0099339.1 MGP_C3HHeJ_G0037533.1 mouse_genomes_project 4 37774210 37774292 + Gm22850 snRNA snRNA MGP_C3HHeJ_T0007745.1 MGP_C3HHeJ_G0006327.1 mouse_genomes_project 4 38634365 38636610 - Gm6297 lincRNA lincRNA MGP_C3HHeJ_T0004455.1 MGP_C3HHeJ_G0003867.1 mouse_genomes_project 4 123798790 123832717 - 1700121C08Rik antisense antisense MGP_C3HHeJ_T0014302.1 MGP_C3HHeJ_G0012406.1 mouse_genomes_project 4 23008093 23008560 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066174.1 MGP_C3HHeJ_G0028191.1 mouse_genomes_project 4 101813879 101818847 - MGP_C3HHeJ_P0066174 C130073F10Rik protein_coding protein_coding MGP_C3HHeJ_T0069327.1 MGP_C3HHeJ_G0028903.1 mouse_genomes_project 4 157192211 157195746 - Fam213b protein_coding processed_transcript MGP_C3HHeJ_T0069328.1 MGP_C3HHeJ_G0028903.1 mouse_genomes_project 4 157193106 157195818 - MGP_C3HHeJ_P0069328 Fam213b protein_coding protein_coding MGP_C3HHeJ_T0069329.1 MGP_C3HHeJ_G0028903.1 mouse_genomes_project 4 157194042 157195843 - MGP_C3HHeJ_P0069329 Fam213b protein_coding protein_coding MGP_C3HHeJ_T0064427.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12889752 12906501 - MGP_C3HHeJ_P0064427 Osgin2 protein_coding protein_coding MGP_C3HHeJ_T0064428.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12889858 12894734 - Osgin2 protein_coding processed_transcript MGP_C3HHeJ_T0064429.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12894576 12906409 - MGP_C3HHeJ_P0064429 Osgin2 protein_coding protein_coding MGP_C3HHeJ_T0064430.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12895156 12906434 - Osgin2 protein_coding processed_transcript MGP_C3HHeJ_T0064431.1 MGP_C3HHeJ_G0027774.1 mouse_genomes_project 4 12897503 12899018 - Osgin2 protein_coding processed_transcript MGP_C3HHeJ_T0068752.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675012 144683680 + MGP_C3HHeJ_P0068752 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068753.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675558 144679431 + MGP_C3HHeJ_P0068753 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068754.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675573 144683680 + MGP_C3HHeJ_P0068754 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068755.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675595 144680258 + MGP_C3HHeJ_P0068755 Pramef8 protein_coding protein_coding MGP_C3HHeJ_T0068756.1 MGP_C3HHeJ_G0028767.1 mouse_genomes_project 4 144675596 144676963 + Pramef8 protein_coding processed_transcript MGP_C3HHeJ_T0098470.1 MGP_C3HHeJ_G0036675.1 mouse_genomes_project 4 57818651 57821046 - Gm12594 sense_intronic sense_intronic MGP_C3HHeJ_T0068079.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134630115 134662965 + MGP_C3HHeJ_P0068079 Aim1l protein_coding unknown_likely_coding MGP_C3HHeJ_T0068080.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134635038 134641813 + MGP_C3HHeJ_P0068080 Aim1l protein_coding protein_coding MGP_C3HHeJ_T0068081.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134637492 134663062 + MGP_C3HHeJ_P0068081 Aim1l protein_coding protein_coding MGP_C3HHeJ_T0068082.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134647932 134651781 + Aim1l protein_coding processed_transcript MGP_C3HHeJ_T0068083.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134648013 134656792 + MGP_C3HHeJ_P0068083 Aim1l protein_coding protein_coding MGP_C3HHeJ_T0068084.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651406 134661657 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068085.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651406 134663059 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068086.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651409 134658786 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068087.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651444 134658350 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068088.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134651530 134651964 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068090.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134661375 134662944 + Aim1l protein_coding retained_intron MGP_C3HHeJ_T0068091.1 MGP_C3HHeJ_G0028606.1 mouse_genomes_project 4 134661710 134663054 + Aim1l protein_coding processed_transcript MGP_C3HHeJ_T0007876.1 MGP_C3HHeJ_G0006429.1 mouse_genomes_project 4 129041702 129070873 + Gm12968 lincRNA lincRNA MGP_C3HHeJ_T0014379.1 MGP_C3HHeJ_G0012483.1 mouse_genomes_project 4 50590523 50590823 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004492.1 MGP_C3HHeJ_G0003897.1 mouse_genomes_project 4 141205722 141207483 + Gm13029 antisense antisense MGP_C3HHeJ_T0007843.1 MGP_C3HHeJ_G0006405.1 mouse_genomes_project 4 108077091 108083890 + 4930407G08Rik lincRNA lincRNA MGP_C3HHeJ_T0004393.1 MGP_C3HHeJ_G0003824.1 mouse_genomes_project 4 81856892 81900345 + Gm11266 antisense antisense MGP_C3HHeJ_T0068027.1 MGP_C3HHeJ_G0028595.1 mouse_genomes_project 4 134105672 134119628 + MGP_C3HHeJ_P0068027 Gpatch3 protein_coding protein_coding MGP_C3HHeJ_T0068028.1 MGP_C3HHeJ_G0028595.1 mouse_genomes_project 4 134110585 134118376 + Gpatch3 protein_coding processed_transcript MGP_C3HHeJ_T0014457.1 MGP_C3HHeJ_G0012561.1 mouse_genomes_project 4 81057921 81058629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068822.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787659 149795435 - MGP_C3HHeJ_P0068822 Miip protein_coding protein_coding MGP_C3HHeJ_T0068823.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787667 149795532 - MGP_C3HHeJ_P0068823 Miip protein_coding protein_coding MGP_C3HHeJ_T0068824.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787671 149789642 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068825.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787672 149795215 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068826.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149787672 149795199 - MGP_C3HHeJ_P0068826 Miip protein_coding protein_coding MGP_C3HHeJ_T0068827.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149789679 149795382 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068828.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149790432 149792263 - Miip protein_coding retained_intron MGP_C3HHeJ_T0068829.1 MGP_C3HHeJ_G0028809.1 mouse_genomes_project 4 149792851 149795239 - Miip protein_coding retained_intron MGP_C3HHeJ_T0098128.1 MGP_C3HHeJ_G0036340.1 mouse_genomes_project 4 39268398 39268513 + n-R5s183 rRNA rRNA MGP_C3HHeJ_T0014619.1 MGP_C3HHeJ_G0012723.1 mouse_genomes_project 4 135977755 135977945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066112.1 MGP_C3HHeJ_G0028174.1 mouse_genomes_project 4 99196710 99198141 + MGP_C3HHeJ_P0066112 Gm12689 protein_coding protein_coding MGP_C3HHeJ_T0065790.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82586038 82708139 - MGP_C3HHeJ_P0065790 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065791.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82592162 82598914 - Ttc39b protein_coding retained_intron MGP_C3HHeJ_T0065792.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82605526 82708123 - MGP_C3HHeJ_P0065792 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065793.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82614444 82641672 - Ttc39b protein_coding processed_transcript MGP_C3HHeJ_T0065794.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82627268 82665294 - MGP_C3HHeJ_P0065794 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065795.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82633498 82708073 - MGP_C3HHeJ_P0065795 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0065796.1 MGP_C3HHeJ_G0028098.1 mouse_genomes_project 4 82633629 82659574 - MGP_C3HHeJ_P0065796 Ttc39b protein_coding protein_coding MGP_C3HHeJ_T0007940.1 MGP_C3HHeJ_G0006476.1 mouse_genomes_project 4 151830661 151831352 - Gm13073 lincRNA lincRNA MGP_C3HHeJ_T0007818.1 MGP_C3HHeJ_G0006388.1 mouse_genomes_project 4 99584032 99585409 - Gm12688 lincRNA lincRNA MGP_C3HHeJ_T0068207.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135774474 135838260 + MGP_C3HHeJ_P0068207 Runx3 protein_coding protein_coding MGP_C3HHeJ_T0068208.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135810013 135835628 + MGP_C3HHeJ_P0068208 Runx3 protein_coding protein_coding MGP_C3HHeJ_T0068209.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135811104 135813750 + Runx3 protein_coding retained_intron MGP_C3HHeJ_T0068210.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135811326 135813512 + Runx3 protein_coding processed_transcript MGP_C3HHeJ_T0068211.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135811671 135813567 + Runx3 protein_coding processed_transcript MGP_C3HHeJ_T0068212.1 MGP_C3HHeJ_G0028636.1 mouse_genomes_project 4 135812576 135813483 + Runx3 protein_coding processed_transcript MGP_C3HHeJ_T0065977.1 MGP_C3HHeJ_G0028146.1 mouse_genomes_project 4 94387350 94402763 - MGP_C3HHeJ_P0065977 Lrrc19 protein_coding protein_coding MGP_C3HHeJ_T0065978.1 MGP_C3HHeJ_G0028146.1 mouse_genomes_project 4 94387350 94402791 - MGP_C3HHeJ_P0065978 Lrrc19 protein_coding protein_coding MGP_C3HHeJ_T0100648.1 MGP_C3HHeJ_G0038842.1 mouse_genomes_project 4 88873885 88874025 - Gm26490 snoRNA snoRNA MGP_C3HHeJ_T0068499.1 MGP_C3HHeJ_G0028703.1 mouse_genomes_project 4 139841333 139846136 + MGP_C3HHeJ_P0068499 Pla2g2e protein_coding protein_coding MGP_C3HHeJ_T0068500.1 MGP_C3HHeJ_G0028703.1 mouse_genomes_project 4 139841362 139845831 + MGP_C3HHeJ_P0068500 Pla2g2e protein_coding protein_coding MGP_C3HHeJ_T0068501.1 MGP_C3HHeJ_G0028703.1 mouse_genomes_project 4 139842746 139846136 + MGP_C3HHeJ_P0068501 Pla2g2e protein_coding protein_coding MGP_C3HHeJ_T0014274.1 MGP_C3HHeJ_G0012378.1 mouse_genomes_project 4 15466891 15467337 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004460.1 MGP_C3HHeJ_G0003871.1 mouse_genomes_project 4 124969931 125001628 - Gm12930 antisense antisense MGP_C3HHeJ_T0004429.1 MGP_C3HHeJ_G0003846.1 mouse_genomes_project 4 109118444 109150156 - 8030443G20Rik antisense antisense MGP_C3HHeJ_T0068767.1 MGP_C3HHeJ_G0028777.1 mouse_genomes_project 4 145010971 145014074 + MGP_C3HHeJ_P0068767 protein_coding protein_coding MGP_C3HHeJ_T0064404.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11373977 11497310 - MGP_C3HHeJ_P0064404 Slc26a7 protein_coding protein_coding MGP_C3HHeJ_T0064405.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11376836 11387966 - Slc26a7 protein_coding processed_transcript MGP_C3HHeJ_T0064406.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11377014 11424378 - MGP_C3HHeJ_P0064406 Slc26a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064407.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11437146 11497032 - MGP_C3HHeJ_P0064407 Slc26a7 protein_coding protein_coding MGP_C3HHeJ_T0064408.1 MGP_C3HHeJ_G0027765.1 mouse_genomes_project 4 11465981 11497174 - MGP_C3HHeJ_P0064408 Slc26a7 protein_coding protein_coding MGP_C3HHeJ_T0014409.1 MGP_C3HHeJ_G0012513.1 mouse_genomes_project 4 60687623 60688886 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014278.1 MGP_C3HHeJ_G0012382.1 mouse_genomes_project 4 16263607 16264455 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066395.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107556077 107557523 + Glis1 protein_coding processed_transcript MGP_C3HHeJ_T0066396.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107556103 107678194 + MGP_C3HHeJ_P0066396 Glis1 protein_coding protein_coding MGP_C3HHeJ_T0066397.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107556205 107754650 + MGP_C3HHeJ_P0066397 Glis1 protein_coding protein_coding MGP_C3HHeJ_T0066398.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107560484 107754650 + MGP_C3HHeJ_P0066398 Glis1 protein_coding protein_coding MGP_C3HHeJ_T0066399.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107696070 107747014 + Glis1 protein_coding processed_transcript MGP_C3HHeJ_T0066400.1 MGP_C3HHeJ_G0028236.1 mouse_genomes_project 4 107734530 107751938 + Glis1 protein_coding processed_transcript MGP_C3HHeJ_T0065921.1 MGP_C3HHeJ_G0028118.1 mouse_genomes_project 4 88177954 88178527 - MGP_C3HHeJ_P0065921 Ifna15 protein_coding protein_coding MGP_C3HHeJ_T0065522.1 MGP_C3HHeJ_G0028029.1 mouse_genomes_project 4 57620232 57635106 + MGP_C3HHeJ_P0065522 Zkscan16 protein_coding protein_coding MGP_C3HHeJ_T0007770.1 MGP_C3HHeJ_G0006347.1 mouse_genomes_project 4 54186733 54220594 + Gm12506 lincRNA lincRNA MGP_C3HHeJ_T0069336.1 MGP_C3HHeJ_G0028905.1 mouse_genomes_project 4 157258181 157259630 + MGP_C3HHeJ_P0069336 Hes5 protein_coding protein_coding MGP_C3HHeJ_T0069337.1 MGP_C3HHeJ_G0028905.1 mouse_genomes_project 4 157258229 157258665 + Hes5 protein_coding processed_transcript MGP_C3HHeJ_T0066273.1 MGP_C3HHeJ_G0028214.1 mouse_genomes_project 4 106501347 106526376 - MGP_C3HHeJ_P0066273 Pcsk9 protein_coding protein_coding MGP_C3HHeJ_T0101984.1 MGP_C3HHeJ_G0039949.1 mouse_genomes_project 4 41981801 41982749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0065440.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425040 55427321 + Fam206a protein_coding retained_intron MGP_C3HHeJ_T0065441.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425044 55432297 + MGP_C3HHeJ_P0065441 Fam206a protein_coding protein_coding MGP_C3HHeJ_T0065442.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425047 55432297 + MGP_C3HHeJ_P0065442 Fam206a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065443.1 MGP_C3HHeJ_G0028012.1 mouse_genomes_project 4 55425313 55428643 + MGP_C3HHeJ_P0065443 Fam206a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065713.1 MGP_C3HHeJ_G0028084.1 mouse_genomes_project 4 73129647 73318088 + MGP_C3HHeJ_P0065713 Frmd3 protein_coding protein_coding MGP_C3HHeJ_T0065714.1 MGP_C3HHeJ_G0028084.1 mouse_genomes_project 4 73129649 73304796 + MGP_C3HHeJ_P0065714 Frmd3 protein_coding protein_coding MGP_C3HHeJ_T0065715.1 MGP_C3HHeJ_G0028084.1 mouse_genomes_project 4 73284090 73303871 + Frmd3 protein_coding processed_transcript MGP_C3HHeJ_T0014428.1 MGP_C3HHeJ_G0012532.1 mouse_genomes_project 4 70985172 70986164 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068466.1 MGP_C3HHeJ_G0028692.1 mouse_genomes_project 4 139253706 139258926 - Cda protein_coding retained_intron MGP_C3HHeJ_T0068467.1 MGP_C3HHeJ_G0028692.1 mouse_genomes_project 4 139253810 139284890 - MGP_C3HHeJ_P0068467 Cda protein_coding protein_coding MGP_C3HHeJ_T0004443.1 MGP_C3HHeJ_G0003857.1 mouse_genomes_project 4 118382757 118385132 + Gm12841 antisense antisense MGP_C3HHeJ_T0069475.1 MGP_C3HHeJ_G0028929.1 mouse_genomes_project 4 158117732 158121904 - MGP_C3HHeJ_P0069475 Tmem88b protein_coding protein_coding MGP_C3HHeJ_T0067631.1 MGP_C3HHeJ_G0028514.1 mouse_genomes_project 4 129511908 129536672 + MGP_C3HHeJ_P0067631 Sync protein_coding protein_coding MGP_C3HHeJ_T0067632.1 MGP_C3HHeJ_G0028514.1 mouse_genomes_project 4 129511922 129535476 + Sync protein_coding retained_intron MGP_C3HHeJ_T0067654.1 MGP_C3HHeJ_G0028520.1 mouse_genomes_project 4 129738178 129740187 - MGP_C3HHeJ_P0067654 Tssk3 protein_coding protein_coding MGP_C3HHeJ_T0007881.1 MGP_C3HHeJ_G0006433.1 mouse_genomes_project 4 129537192 129546255 + Gm26722 lincRNA lincRNA MGP_C3HHeJ_T0069320.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157167486 157192229 + MGP_C3HHeJ_P0069320 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069321.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157167486 157192236 + MGP_C3HHeJ_P0069321 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069322.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157167537 157192236 + MGP_C3HHeJ_P0069322 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069323.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157169506 157192229 + MGP_C3HHeJ_P0069323 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069324.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157169540 157192229 + MGP_C3HHeJ_P0069324 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069325.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157178708 157182391 + MGP_C3HHeJ_P0069325 Mmel1 protein_coding protein_coding MGP_C3HHeJ_T0069326.1 MGP_C3HHeJ_G0028902.1 mouse_genomes_project 4 157189532 157190663 + Mmel1 protein_coding retained_intron MGP_C3HHeJ_T0010498.1 MGP_C3HHeJ_G0008631.1 mouse_genomes_project 4 34271487 34271568 - Mir876 miRNA miRNA MGP_C3HHeJ_T0017863.1 MGP_C3HHeJ_G0015335.1 mouse_genomes_project 4 124738987 124756116 - Gm12915 processed_transcript processed_transcript MGP_C3HHeJ_T0014402.1 MGP_C3HHeJ_G0012506.1 mouse_genomes_project 4 56071840 56072326 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004493.1 MGP_C3HHeJ_G0003898.1 mouse_genomes_project 4 142061474 142071659 - Gm13031 antisense antisense MGP_C3HHeJ_T0068675.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142605965 142685051 - MGP_C3HHeJ_P0068675 Spen protein_coding protein_coding MGP_C3HHeJ_T0068676.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142605965 142684903 - MGP_C3HHeJ_P0068676 Spen protein_coding protein_coding MGP_C3HHeJ_T0068677.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142606530 142609560 - Spen protein_coding processed_transcript MGP_C3HHeJ_T0068678.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142635042 142658097 - Spen protein_coding processed_transcript MGP_C3HHeJ_T0068679.1 MGP_C3HHeJ_G0028747.1 mouse_genomes_project 4 142662932 142684707 - Spen protein_coding processed_transcript MGP_C3HHeJ_T0007832.1 MGP_C3HHeJ_G0006399.1 mouse_genomes_project 4 106351654 106352641 + Gm12730 lincRNA lincRNA MGP_C3HHeJ_T0017883.1 MGP_C3HHeJ_G0015341.1 mouse_genomes_project 4 134581993 134583696 + Gm13061 processed_transcript processed_transcript MGP_C3HHeJ_T0067280.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123171704 123198219 + Pabpc4 protein_coding processed_transcript MGP_C3HHeJ_T0067281.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194280 123213554 + MGP_C3HHeJ_P0067281 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067282.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194287 123213461 + MGP_C3HHeJ_P0067282 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067283.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194300 123213451 + MGP_C3HHeJ_P0067283 Pabpc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067284.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194367 123213461 + MGP_C3HHeJ_P0067284 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067285.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123194551 123213461 + MGP_C3HHeJ_P0067285 Pabpc4 protein_coding protein_coding MGP_C3HHeJ_T0067286.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123195098 123213159 + MGP_C3HHeJ_P0067286 Pabpc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067287.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123209361 123212635 + Pabpc4 protein_coding processed_transcript MGP_C3HHeJ_T0067288.1 MGP_C3HHeJ_G0028436.1 mouse_genomes_project 4 123211808 123213461 + Pabpc4 protein_coding retained_intron MGP_C3HHeJ_T0068792.1 MGP_C3HHeJ_G0028795.1 mouse_genomes_project 4 146040634 146049935 + MGP_C3HHeJ_P0068792 9430007A20Rik protein_coding protein_coding MGP_C3HHeJ_T0007730.1 MGP_C3HHeJ_G0006312.1 mouse_genomes_project 4 20027357 20037691 - 1700025O08Rik lincRNA lincRNA MGP_C3HHeJ_T0007855.1 MGP_C3HHeJ_G0006417.1 mouse_genomes_project 4 124281385 124290128 - Gm12916 lincRNA lincRNA MGP_C3HHeJ_T0067205.1 MGP_C3HHeJ_G0028411.1 mouse_genomes_project 4 121277039 121328090 - MGP_C3HHeJ_P0067205 Kcnq4 protein_coding protein_coding MGP_C3HHeJ_T0067206.1 MGP_C3HHeJ_G0028411.1 mouse_genomes_project 4 121296117 121330211 - Kcnq4 protein_coding processed_transcript MGP_C3HHeJ_T0014280.1 MGP_C3HHeJ_G0012384.1 mouse_genomes_project 4 17417471 17418775 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014481.1 MGP_C3HHeJ_G0012585.1 mouse_genomes_project 4 91108334 91108895 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014455.1 MGP_C3HHeJ_G0012559.1 mouse_genomes_project 4 79332694 79333837 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068319.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137037915 137043577 + MGP_C3HHeJ_P0068319 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0068320.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137038007 137043334 + MGP_C3HHeJ_P0068320 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0068321.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137038301 137039706 + Zfp46 protein_coding processed_transcript MGP_C3HHeJ_T0068322.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137039297 137047212 + MGP_C3HHeJ_P0068322 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0068323.1 MGP_C3HHeJ_G0028661.1 mouse_genomes_project 4 137039334 137043498 + MGP_C3HHeJ_P0068323 Zfp46 protein_coding protein_coding MGP_C3HHeJ_T0004442.1 MGP_C3HHeJ_G0003856.1 mouse_genomes_project 4 117942934 117952512 + Gm12828 antisense antisense MGP_C3HHeJ_T0065888.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86428319 86476180 + MGP_C3HHeJ_P0065888 Acer2 protein_coding protein_coding MGP_C3HHeJ_T0065889.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86428337 86490002 + Acer2 protein_coding processed_transcript MGP_C3HHeJ_T0065890.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86428337 86476180 + MGP_C3HHeJ_P0065890 Acer2 protein_coding protein_coding MGP_C3HHeJ_T0065891.1 MGP_C3HHeJ_G0028112.1 mouse_genomes_project 4 86486891 86492337 + Acer2 protein_coding processed_transcript MGP_C3HHeJ_T0014519.1 MGP_C3HHeJ_G0012623.1 mouse_genomes_project 4 105434117 105435454 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102015.1 MGP_C3HHeJ_G0039980.1 mouse_genomes_project 4 122066182 122068828 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100670.1 MGP_C3HHeJ_G0038864.1 mouse_genomes_project 4 131078032 131078105 + Snord85 snoRNA snoRNA MGP_C3HHeJ_T0102028.1 MGP_C3HHeJ_G0039993.1 mouse_genomes_project 4 145823423 145823876 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067077.1 MGP_C3HHeJ_G0028379.1 mouse_genomes_project 4 119375841 119403005 + MGP_C3HHeJ_P0067077 protein_coding protein_coding MGP_C3HHeJ_T0017815.1 MGP_C3HHeJ_G0015301.1 mouse_genomes_project 4 30790636 30797808 - Gm11934 processed_transcript processed_transcript MGP_C3HHeJ_T0014264.1 MGP_C3HHeJ_G0012368.1 mouse_genomes_project 4 13158569 13159636 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014241.1 MGP_C3HHeJ_G0012345.1 mouse_genomes_project 4 7312725 7313016 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010493.1 MGP_C3HHeJ_G0008626.1 mouse_genomes_project 4 19835276 19835379 + Gm24078 miRNA miRNA MGP_C3HHeJ_T0067960.1 MGP_C3HHeJ_G0028578.1 mouse_genomes_project 4 133332372 133363666 - MGP_C3HHeJ_P0067960 Stx12 protein_coding protein_coding MGP_C3HHeJ_T0067961.1 MGP_C3HHeJ_G0028578.1 mouse_genomes_project 4 133335917 133342116 - Stx12 protein_coding processed_transcript MGP_C3HHeJ_T0099407.1 MGP_C3HHeJ_G0037601.1 mouse_genomes_project 4 150409444 150409596 - Gm23303 snRNA snRNA MGP_C3HHeJ_T0101205.1 MGP_C3HHeJ_G0039342.1 mouse_genomes_project 4 6655643 6657078 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101206.1 MGP_C3HHeJ_G0039342.1 mouse_genomes_project 4 6656318 6657316 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001370.1 MGP_C3HHeJ_G0001301.1 mouse_genomes_project 4 3033209 3033484 + TEC TEC MGP_C3HHeJ_T0068172.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135138018 135147697 - MGP_C3HHeJ_P0068172 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068173.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135138025 135147816 - MGP_C3HHeJ_P0068173 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068174.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135138032 135147727 - MGP_C3HHeJ_P0068174 Mtfr1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068175.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135140830 135147687 - Mtfr1l protein_coding retained_intron MGP_C3HHeJ_T0068176.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135141571 135147525 - MGP_C3HHeJ_P0068176 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068177.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135141606 135147816 - MGP_C3HHeJ_P0068177 Mtfr1l protein_coding protein_coding MGP_C3HHeJ_T0068178.1 MGP_C3HHeJ_G0028627.1 mouse_genomes_project 4 135141678 135147473 - Mtfr1l protein_coding retained_intron MGP_C3HHeJ_T0068666.1 MGP_C3HHeJ_G0028744.1 mouse_genomes_project 4 142554613 142559144 + MGP_C3HHeJ_P0068666 Hspb7 protein_coding protein_coding MGP_C3HHeJ_T0069129.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196852 154204740 - MGP_C3HHeJ_P0069129 Zbtb48 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069130.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196852 154204740 - MGP_C3HHeJ_P0069130 Zbtb48 protein_coding protein_coding MGP_C3HHeJ_T0069131.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196854 154204750 - Zbtb48 protein_coding retained_intron MGP_C3HHeJ_T0069132.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154196878 154197695 - Zbtb48 protein_coding processed_transcript MGP_C3HHeJ_T0069133.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154198187 154199185 - Zbtb48 protein_coding processed_transcript MGP_C3HHeJ_T0069134.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154198670 154203523 - MGP_C3HHeJ_P0069134 Zbtb48 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069135.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154199564 154203126 - Zbtb48 protein_coding retained_intron MGP_C3HHeJ_T0069136.1 MGP_C3HHeJ_G0028870.1 mouse_genomes_project 4 154203556 154204716 - MGP_C3HHeJ_P0069136 Zbtb48 protein_coding protein_coding MGP_C3HHeJ_T0017848.1 MGP_C3HHeJ_G0015324.1 mouse_genomes_project 4 103547113 103558877 - Gm12720 processed_transcript processed_transcript MGP_C3HHeJ_T0007878.1 MGP_C3HHeJ_G0006431.1 mouse_genomes_project 4 129346140 129347960 + Gm15906 lincRNA lincRNA MGP_C3HHeJ_T0065975.1 MGP_C3HHeJ_G0028145.1 mouse_genomes_project 4 94365412 94418024 + MGP_C3HHeJ_P0065975 Ift74 protein_coding protein_coding MGP_C3HHeJ_T0065976.1 MGP_C3HHeJ_G0028145.1 mouse_genomes_project 4 94365412 94454283 + MGP_C3HHeJ_P0065976 Ift74 protein_coding protein_coding MGP_C3HHeJ_T0065979.1 MGP_C3HHeJ_G0028145.1 mouse_genomes_project 4 94434901 94448119 + Ift74 protein_coding processed_transcript MGP_C3HHeJ_T0014482.1 MGP_C3HHeJ_G0012586.1 mouse_genomes_project 4 91449165 91450497 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017828.1 MGP_C3HHeJ_G0015310.1 mouse_genomes_project 4 56426638 56432791 - Gm12526 processed_transcript processed_transcript MGP_C3HHeJ_T0014338.1 MGP_C3HHeJ_G0012442.1 mouse_genomes_project 4 32513263 32513605 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064612.1 MGP_C3HHeJ_G0027822.1 mouse_genomes_project 4 31464395 31475245 + Cnr1 protein_coding processed_transcript MGP_C3HHeJ_T0064613.1 MGP_C3HHeJ_G0027822.1 mouse_genomes_project 4 31464434 31488840 + MGP_C3HHeJ_P0064613 Cnr1 protein_coding protein_coding MGP_C3HHeJ_T0064614.1 MGP_C3HHeJ_G0027822.1 mouse_genomes_project 4 31466004 31488828 + MGP_C3HHeJ_P0064614 Cnr1 protein_coding protein_coding MGP_C3HHeJ_T0068898.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528835 150553547 + MGP_C3HHeJ_P0068898 Exosc10 protein_coding protein_coding MGP_C3HHeJ_T0068899.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528837 150553536 + Exosc10 protein_coding processed_transcript MGP_C3HHeJ_T0068900.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528861 150553539 + MGP_C3HHeJ_P0068900 Exosc10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068901.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150528868 150553547 + MGP_C3HHeJ_P0068901 Exosc10 protein_coding protein_coding MGP_C3HHeJ_T0068902.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150533313 150534404 + MGP_C3HHeJ_P0068902 Exosc10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068903.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150536588 150547713 + Exosc10 protein_coding retained_intron MGP_C3HHeJ_T0068904.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150539489 150547603 + Exosc10 protein_coding retained_intron MGP_C3HHeJ_T0068905.1 MGP_C3HHeJ_G0028828.1 mouse_genomes_project 4 150547266 150553467 + Exosc10 protein_coding processed_transcript MGP_C3HHeJ_T0099334.1 MGP_C3HHeJ_G0037528.1 mouse_genomes_project 4 28585089 28585193 - Gm25705 snRNA snRNA MGP_C3HHeJ_T0014367.1 MGP_C3HHeJ_G0012471.1 mouse_genomes_project 4 44652537 44652948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068252.1 MGP_C3HHeJ_G0028643.1 mouse_genomes_project 4 136244334 136276060 - MGP_C3HHeJ_P0068252 Grhl3 protein_coding protein_coding MGP_C3HHeJ_T0068258.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136574643 136584910 + MGP_C3HHeJ_P0068258 Srsf10 protein_coding protein_coding MGP_C3HHeJ_T0068259.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136574774 136589463 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068260.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136575008 136577688 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068261.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136575028 136578118 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068262.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136580674 136582548 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068263.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136580706 136584538 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0068264.1 MGP_C3HHeJ_G0028647.1 mouse_genomes_project 4 136582179 136584581 + Srsf10 protein_coding processed_transcript MGP_C3HHeJ_T0065557.1 MGP_C3HHeJ_G0028040.1 mouse_genomes_project 4 58548651 58560158 - MGP_C3HHeJ_P0065557 Inip protein_coding protein_coding MGP_C3HHeJ_T0065558.1 MGP_C3HHeJ_G0028040.1 mouse_genomes_project 4 58550375 58560117 - Inip protein_coding processed_transcript MGP_C3HHeJ_T0065559.1 MGP_C3HHeJ_G0028040.1 mouse_genomes_project 4 58557294 58560128 - Inip protein_coding processed_transcript MGP_C3HHeJ_T0067070.1 MGP_C3HHeJ_G0028372.1 mouse_genomes_project 4 119198552 119199527 - MGP_C3HHeJ_P0067070 Olfr1342 protein_coding protein_coding MGP_C3HHeJ_T0100659.1 MGP_C3HHeJ_G0038853.1 mouse_genomes_project 4 117610968 117611039 - Snord38a snoRNA snoRNA MGP_C3HHeJ_T0065930.1 MGP_C3HHeJ_G0028123.1 mouse_genomes_project 4 88307501 88308559 - MGP_C3HHeJ_P0065930 Ifnab protein_coding protein_coding MGP_C3HHeJ_T0014659.1 MGP_C3HHeJ_G0012763.1 mouse_genomes_project 4 154344427 154344911 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007786.1 MGP_C3HHeJ_G0006361.1 mouse_genomes_project 4 67087882 67208732 + lincRNA lincRNA MGP_C3HHeJ_T0099371.1 MGP_C3HHeJ_G0037565.1 mouse_genomes_project 4 101186601 101186765 + Gm25124 snRNA snRNA MGP_C3HHeJ_T0067658.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129765281 129790468 - MGP_C3HHeJ_P0067658 protein_coding protein_coding MGP_C3HHeJ_T0067659.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129765446 129766697 - protein_coding retained_intron MGP_C3HHeJ_T0067660.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129767261 129771673 - protein_coding retained_intron MGP_C3HHeJ_T0067661.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129771373 129776551 - protein_coding retained_intron MGP_C3HHeJ_T0067662.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129771520 129773486 - protein_coding retained_intron MGP_C3HHeJ_T0067663.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129771708 129773444 - protein_coding retained_intron MGP_C3HHeJ_T0067664.1 MGP_C3HHeJ_G0028523.1 mouse_genomes_project 4 129776140 129790446 - protein_coding retained_intron MGP_C3HHeJ_T0014303.1 MGP_C3HHeJ_G0012407.1 mouse_genomes_project 4 23595564 23596291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014596.1 MGP_C3HHeJ_G0012700.1 mouse_genomes_project 4 126906147 126906856 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066965.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334017 118342145 + MGP_C3HHeJ_P0066965 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066966.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334355 118374323 + MGP_C3HHeJ_P0066966 Slc6a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066967.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334407 118368360 + MGP_C3HHeJ_P0066967 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066968.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118334460 118356247 + Slc6a9 protein_coding processed_transcript MGP_C3HHeJ_T0066969.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118348231 118363078 + MGP_C3HHeJ_P0066969 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066970.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118348237 118363078 + MGP_C3HHeJ_P0066970 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066971.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118348408 118367490 + MGP_C3HHeJ_P0066971 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066972.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118354551 118356503 + MGP_C3HHeJ_P0066972 Slc6a9 protein_coding protein_coding MGP_C3HHeJ_T0066973.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118354603 118355087 + Slc6a9 protein_coding processed_transcript MGP_C3HHeJ_T0066985.1 MGP_C3HHeJ_G0028351.1 mouse_genomes_project 4 118373212 118374325 + Slc6a9 protein_coding retained_intron MGP_C3HHeJ_T0066526.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109183123 109243737 + MGP_C3HHeJ_P0066526 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066527.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109183123 109243737 + MGP_C3HHeJ_P0066527 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066528.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109183238 109243122 + MGP_C3HHeJ_P0066528 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066529.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109198960 109226615 + MGP_C3HHeJ_P0066529 Nrd1 protein_coding protein_coding MGP_C3HHeJ_T0066530.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109206231 109214725 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066531.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109214419 109225381 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066532.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109221720 109226077 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066533.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109222165 109243436 + Nrd1 protein_coding processed_transcript MGP_C3HHeJ_T0066534.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109228245 109232859 + Nrd1 protein_coding processed_transcript MGP_C3HHeJ_T0066535.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109236914 109238837 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066536.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109240895 109241762 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0066537.1 MGP_C3HHeJ_G0028262.1 mouse_genomes_project 4 109240952 109242641 + Nrd1 protein_coding retained_intron MGP_C3HHeJ_T0100601.1 MGP_C3HHeJ_G0038795.1 mouse_genomes_project 4 2337221 2337347 - Gm24337 snoRNA snoRNA MGP_C3HHeJ_T0067414.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206081 126218559 - Sh3d21 protein_coding processed_transcript MGP_C3HHeJ_T0067415.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206081 126218520 - MGP_C3HHeJ_P0067415 Sh3d21 protein_coding protein_coding MGP_C3HHeJ_T0067416.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206081 126219385 - MGP_C3HHeJ_P0067416 Sh3d21 protein_coding protein_coding MGP_C3HHeJ_T0067417.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126206087 126218495 - Sh3d21 protein_coding processed_transcript MGP_C3HHeJ_T0067418.1 MGP_C3HHeJ_G0028469.1 mouse_genomes_project 4 126207036 126218550 - Sh3d21 protein_coding processed_transcript MGP_C3HHeJ_T0067213.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121444762 121474156 + Rims3 protein_coding processed_transcript MGP_C3HHeJ_T0067214.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121444765 121489288 + MGP_C3HHeJ_P0067214 Rims3 protein_coding protein_coding MGP_C3HHeJ_T0067215.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121451697 121489288 + MGP_C3HHeJ_P0067215 Rims3 protein_coding protein_coding MGP_C3HHeJ_T0067216.1 MGP_C3HHeJ_G0028413.1 mouse_genomes_project 4 121467535 121484269 + MGP_C3HHeJ_P0067216 Rims3 protein_coding protein_coding MGP_C3HHeJ_T0069154.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154304903 154338503 - MGP_C3HHeJ_P0069154 Espn protein_coding protein_coding MGP_C3HHeJ_T0069155.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154304908 154338667 - MGP_C3HHeJ_P0069155 Espn protein_coding protein_coding MGP_C3HHeJ_T0069156.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305429 154313492 - MGP_C3HHeJ_P0069156 Espn protein_coding protein_coding MGP_C3HHeJ_T0069157.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305440 154338518 - MGP_C3HHeJ_P0069157 Espn protein_coding protein_coding MGP_C3HHeJ_T0069158.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305442 154316436 - MGP_C3HHeJ_P0069158 Espn protein_coding protein_coding MGP_C3HHeJ_T0069159.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305454 154316908 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069160.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069160 Espn protein_coding protein_coding MGP_C3HHeJ_T0069161.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069161 Espn protein_coding protein_coding MGP_C3HHeJ_T0069162.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069162 Espn protein_coding protein_coding MGP_C3HHeJ_T0069163.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069163 Espn protein_coding protein_coding MGP_C3HHeJ_T0069164.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069164 Espn protein_coding protein_coding MGP_C3HHeJ_T0069165.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320896 - MGP_C3HHeJ_P0069165 Espn protein_coding protein_coding MGP_C3HHeJ_T0069166.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069166 Espn protein_coding protein_coding MGP_C3HHeJ_T0069167.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305693 154320853 - MGP_C3HHeJ_P0069167 Espn protein_coding protein_coding MGP_C3HHeJ_T0069168.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154305704 154316412 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069169.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154307471 154316437 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069170.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154308286 154335298 - MGP_C3HHeJ_P0069170 Espn protein_coding protein_coding MGP_C3HHeJ_T0069171.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154312360 154316428 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0069172.1 MGP_C3HHeJ_G0028875.1 mouse_genomes_project 4 154312708 154315801 - Espn protein_coding processed_transcript MGP_C3HHeJ_T0065942.1 MGP_C3HHeJ_G0028134.1 mouse_genomes_project 4 88973811 88981639 - MGP_C3HHeJ_P0065942 Cdkn2a protein_coding protein_coding MGP_C3HHeJ_T0065943.1 MGP_C3HHeJ_G0028134.1 mouse_genomes_project 4 88973881 88993381 - MGP_C3HHeJ_P0065943 Cdkn2a protein_coding protein_coding MGP_C3HHeJ_T0068194.1 MGP_C3HHeJ_G0028633.1 mouse_genomes_project 4 135529318 135550246 - MGP_C3HHeJ_P0068194 Tmem50a protein_coding protein_coding MGP_C3HHeJ_T0068195.1 MGP_C3HHeJ_G0028633.1 mouse_genomes_project 4 135529860 135550237 - MGP_C3HHeJ_P0068195 Tmem50a protein_coding protein_coding MGP_C3HHeJ_T0068935.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150798445 150944166 + MGP_C3HHeJ_P0068935 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0068936.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150798445 150953903 + MGP_C3HHeJ_P0068936 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0068937.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150798481 150834806 + Casz1 protein_coding processed_transcript MGP_C3HHeJ_T0068938.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150887771 150890326 + Casz1 protein_coding processed_transcript MGP_C3HHeJ_T0068939.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150899483 150931938 + MGP_C3HHeJ_P0068939 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0068940.1 MGP_C3HHeJ_G0028833.1 mouse_genomes_project 4 150932155 150939550 + MGP_C3HHeJ_P0068940 Casz1 protein_coding protein_coding MGP_C3HHeJ_T0066509.1 MGP_C3HHeJ_G0028255.1 mouse_genomes_project 4 108797838 108944026 - MGP_C3HHeJ_P0066509 protein_coding protein_coding MGP_C3HHeJ_T0066510.1 MGP_C3HHeJ_G0028255.1 mouse_genomes_project 4 108797838 108944311 - MGP_C3HHeJ_P0066510 protein_coding protein_coding MGP_C3HHeJ_T0066511.1 MGP_C3HHeJ_G0028255.1 mouse_genomes_project 4 108799627 108886556 - MGP_C3HHeJ_P0066511 protein_coding protein_coding MGP_C3HHeJ_T0014570.1 MGP_C3HHeJ_G0012674.1 mouse_genomes_project 4 120053183 120053597 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065510.1 MGP_C3HHeJ_G0028027.1 mouse_genomes_project 4 57453098 57454040 - MGP_C3HHeJ_P0065510 Olfr267 protein_coding protein_coding MGP_C3HHeJ_T0014288.1 MGP_C3HHeJ_G0012392.1 mouse_genomes_project 4 19616514 19617086 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066418.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009830 108019403 + MGP_C3HHeJ_P0066418 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066419.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009842 108016999 + MGP_C3HHeJ_P0066419 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066420.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009866 108017281 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066421.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009880 108017137 + MGP_C3HHeJ_P0066421 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066422.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009883 108015880 + MGP_C3HHeJ_P0066422 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066423.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009886 108015365 + MGP_C3HHeJ_P0066423 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066424.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009915 108017137 + MGP_C3HHeJ_P0066424 0610037L13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066425.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009916 108017821 + MGP_C3HHeJ_P0066425 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066426.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108009925 108012022 + MGP_C3HHeJ_P0066426 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0066427.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108010136 108017183 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066428.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108010244 108017076 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066429.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108010257 108017137 + 0610037L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0066430.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108013192 108017072 + 0610037L13Rik protein_coding retained_intron MGP_C3HHeJ_T0066431.1 MGP_C3HHeJ_G0028240.1 mouse_genomes_project 4 108013388 108017137 + MGP_C3HHeJ_P0066431 0610037L13Rik protein_coding protein_coding MGP_C3HHeJ_T0097902.1 MGP_C3HHeJ_G0036114.1 mouse_genomes_project 4 34602092 34602430 - pseudogene pseudogene MGP_C3HHeJ_T0010517.1 MGP_C3HHeJ_G0008650.1 mouse_genomes_project 4 87739324 87739410 + Mir491 miRNA miRNA MGP_C3HHeJ_T0004347.1 MGP_C3HHeJ_G0003785.1 mouse_genomes_project 4 8299150 8300528 - Gm11831 antisense antisense MGP_C3HHeJ_T0067376.1 MGP_C3HHeJ_G0028458.1 mouse_genomes_project 4 125072857 125086079 - MGP_C3HHeJ_P0067376 Dnali1 protein_coding protein_coding MGP_C3HHeJ_T0014479.1 MGP_C3HHeJ_G0012583.1 mouse_genomes_project 4 90587403 90587898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067368.1 MGP_C3HHeJ_G0028456.1 mouse_genomes_project 4 125001048 125023707 + MGP_C3HHeJ_P0067368 Rspo1 protein_coding protein_coding MGP_C3HHeJ_T0067369.1 MGP_C3HHeJ_G0028456.1 mouse_genomes_project 4 125022087 125023133 + Rspo1 protein_coding processed_transcript MGP_C3HHeJ_T0004395.1 MGP_C3HHeJ_G0003826.1 mouse_genomes_project 4 82761279 82773607 - Gm11413 antisense antisense MGP_C3HHeJ_T0017840.1 MGP_C3HHeJ_G0015318.1 mouse_genomes_project 4 94206685 94223773 - Gm12655 processed_transcript processed_transcript MGP_C3HHeJ_T0017841.1 MGP_C3HHeJ_G0015318.1 mouse_genomes_project 4 94207763 94223760 - Gm12655 processed_transcript processed_transcript MGP_C3HHeJ_T0007801.1 MGP_C3HHeJ_G0006374.1 mouse_genomes_project 4 86899471 86902380 + Gm12600 lincRNA lincRNA MGP_C3HHeJ_T0004476.1 MGP_C3HHeJ_G0003884.1 mouse_genomes_project 4 134416402 134421102 + Gm12977 antisense antisense MGP_C3HHeJ_T0004477.1 MGP_C3HHeJ_G0003884.1 mouse_genomes_project 4 134417046 134420328 + Gm12977 antisense antisense MGP_C3HHeJ_T0064581.1 MGP_C3HHeJ_G0027812.1 mouse_genomes_project 4 30238398 30239526 + MGP_C3HHeJ_P0064581 Lyrm2 protein_coding protein_coding MGP_C3HHeJ_T0064582.1 MGP_C3HHeJ_G0027812.1 mouse_genomes_project 4 30238424 30239702 + Lyrm2 protein_coding retained_intron MGP_C3HHeJ_T0064583.1 MGP_C3HHeJ_G0027812.1 mouse_genomes_project 4 30238427 30239118 + Lyrm2 protein_coding retained_intron MGP_C3HHeJ_T0100642.1 MGP_C3HHeJ_G0038836.1 mouse_genomes_project 4 73756696 73756834 + Gm26379 snoRNA snoRNA MGP_C3HHeJ_T0100667.1 MGP_C3HHeJ_G0038861.1 mouse_genomes_project 4 123207549 123207680 + Gm22154 snoRNA snoRNA MGP_C3HHeJ_T0064761.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39368075 39441571 - MGP_C3HHeJ_P0064761 Kif24 protein_coding protein_coding MGP_C3HHeJ_T0064762.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39368941 39441579 - MGP_C3HHeJ_P0064762 Kif24 protein_coding protein_coding MGP_C3HHeJ_T0064763.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39372515 39391215 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0064764.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39384782 39386268 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0064765.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39394984 39441571 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0064766.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39410551 39441577 - MGP_C3HHeJ_P0064766 Kif24 protein_coding protein_coding MGP_C3HHeJ_T0064767.1 MGP_C3HHeJ_G0027858.1 mouse_genomes_project 4 39429358 39441577 - Kif24 protein_coding processed_transcript MGP_C3HHeJ_T0065345.1 MGP_C3HHeJ_G0027980.1 mouse_genomes_project 4 47912318 47916800 - MGP_C3HHeJ_P0065345 protein_coding protein_coding MGP_C3HHeJ_T0065347.1 MGP_C3HHeJ_G0027980.1 mouse_genomes_project 4 47916631 47938979 - MGP_C3HHeJ_P0065347 protein_coding protein_coding MGP_C3HHeJ_T0065348.1 MGP_C3HHeJ_G0027980.1 mouse_genomes_project 4 47925674 47938946 - protein_coding processed_transcript MGP_C3HHeJ_T0014483.1 MGP_C3HHeJ_G0012587.1 mouse_genomes_project 4 91534086 91538342 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014474.1 MGP_C3HHeJ_G0012578.1 mouse_genomes_project 4 89117422 89119850 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065487.1 MGP_C3HHeJ_G0028023.1 mouse_genomes_project 4 56652577 56679075 - Txndc8 protein_coding processed_transcript MGP_C3HHeJ_T0065488.1 MGP_C3HHeJ_G0028023.1 mouse_genomes_project 4 56652577 56679174 - MGP_C3HHeJ_P0065488 Txndc8 protein_coding protein_coding MGP_C3HHeJ_T0065489.1 MGP_C3HHeJ_G0028023.1 mouse_genomes_project 4 56652579 56668847 - MGP_C3HHeJ_P0065489 Txndc8 protein_coding protein_coding MGP_C3HHeJ_T0067532.1 MGP_C3HHeJ_G0028492.1 mouse_genomes_project 4 127447630 127450249 - MGP_C3HHeJ_P0067532 Gja4 protein_coding protein_coding MGP_C3HHeJ_T0065228.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44272503 44344665 + MGP_C3HHeJ_P0065228 Tdrd7 protein_coding protein_coding MGP_C3HHeJ_T0065229.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44279396 44344665 + MGP_C3HHeJ_P0065229 Tdrd7 protein_coding protein_coding MGP_C3HHeJ_T0065230.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44279997 44296145 + Tdrd7 protein_coding processed_transcript MGP_C3HHeJ_T0065231.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44298642 44314056 + Tdrd7 protein_coding processed_transcript MGP_C3HHeJ_T0065232.1 MGP_C3HHeJ_G0027950.1 mouse_genomes_project 4 44335219 44344665 + Tdrd7 protein_coding processed_transcript MGP_C3HHeJ_T0064756.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39320734 39367856 + MGP_C3HHeJ_P0064756 Ubap1 protein_coding protein_coding MGP_C3HHeJ_T0064757.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39320734 39367097 + MGP_C3HHeJ_P0064757 Ubap1 protein_coding protein_coding MGP_C3HHeJ_T0064758.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39320786 39347391 + Ubap1 protein_coding processed_transcript MGP_C3HHeJ_T0064759.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39347353 39356741 + Ubap1 protein_coding processed_transcript MGP_C3HHeJ_T0064760.1 MGP_C3HHeJ_G0027857.1 mouse_genomes_project 4 39347830 39366023 + MGP_C3HHeJ_P0064760 Ubap1 protein_coding protein_coding MGP_C3HHeJ_T0007749.1 MGP_C3HHeJ_G0006331.1 mouse_genomes_project 4 41924575 41929087 + lincRNA lincRNA MGP_C3HHeJ_T0014644.1 MGP_C3HHeJ_G0012748.1 mouse_genomes_project 4 146319216 146320027 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067074.1 MGP_C3HHeJ_G0028376.1 mouse_genomes_project 4 119263954 119264896 - MGP_C3HHeJ_P0067074 Olfr1338 protein_coding protein_coding MGP_C3HHeJ_T0065400.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51995834 52108473 + MGP_C3HHeJ_P0065400 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065401.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51995834 52185801 + MGP_C3HHeJ_P0065401 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065402.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51997853 52086916 + Slc44a1 protein_coding processed_transcript MGP_C3HHeJ_T0065403.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51997866 52131333 + MGP_C3HHeJ_P0065403 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065404.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 51997866 52126975 + MGP_C3HHeJ_P0065404 Slc44a1 protein_coding protein_coding MGP_C3HHeJ_T0065405.1 MGP_C3HHeJ_G0028000.1 mouse_genomes_project 4 52159628 52185310 + Slc44a1 protein_coding processed_transcript MGP_C3HHeJ_T0007943.1 MGP_C3HHeJ_G0006479.1 mouse_genomes_project 4 152781586 152798374 - Gm16079 lincRNA lincRNA MGP_C3HHeJ_T0065939.1 MGP_C3HHeJ_G0028132.1 mouse_genomes_project 4 88528690 88529354 - MGP_C3HHeJ_P0065939 Ifne protein_coding protein_coding MGP_C3HHeJ_T0069437.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958239 157963571 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069438.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958254 157983313 + MGP_C3HHeJ_P0069438 Cdk11b protein_coding protein_coding MGP_C3HHeJ_T0069439.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958265 157959082 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069440.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958268 157983313 + MGP_C3HHeJ_P0069440 Cdk11b protein_coding protein_coding MGP_C3HHeJ_T0069441.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157958295 157983313 + MGP_C3HHeJ_P0069441 Cdk11b protein_coding protein_coding MGP_C3HHeJ_T0069442.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157967400 157973056 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069443.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157980577 157981780 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0069444.1 MGP_C3HHeJ_G0028921.1 mouse_genomes_project 4 157980742 157981667 + Cdk11b protein_coding processed_transcript MGP_C3HHeJ_T0007810.1 MGP_C3HHeJ_G0006381.1 mouse_genomes_project 4 93220986 93425811 - Gm12649 lincRNA lincRNA MGP_C3HHeJ_T0007886.1 MGP_C3HHeJ_G0006435.1 mouse_genomes_project 4 130251945 130255098 + 1700003M07Rik lincRNA lincRNA MGP_C3HHeJ_T0007887.1 MGP_C3HHeJ_G0006435.1 mouse_genomes_project 4 130252379 130255235 + 1700003M07Rik lincRNA lincRNA MGP_C3HHeJ_T0065609.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61473179 61573722 + MGP_C3HHeJ_P0065609 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065610.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61492586 61571321 + MGP_C3HHeJ_P0065610 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065611.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61514186 61536019 + Rgs3 protein_coding processed_transcript MGP_C3HHeJ_T0065612.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61530382 61623154 + MGP_C3HHeJ_P0065612 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065613.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61530444 61573722 + MGP_C3HHeJ_P0065613 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065614.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61535633 61543409 + Rgs3 protein_coding processed_transcript MGP_C3HHeJ_T0065615.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61535811 61538621 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065616.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61548283 61614780 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065617.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61548283 61623154 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065618.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61566455 61573722 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065619.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61587934 61623154 + MGP_C3HHeJ_P0065619 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0065620.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61616325 61623154 + Rgs3 protein_coding retained_intron MGP_C3HHeJ_T0065621.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61616539 61618013 + Rgs3 protein_coding processed_transcript MGP_C3HHeJ_T0065622.1 MGP_C3HHeJ_G0028058.1 mouse_genomes_project 4 61616719 61624137 + MGP_C3HHeJ_P0065622 Rgs3 protein_coding protein_coding MGP_C3HHeJ_T0100623.1 MGP_C3HHeJ_G0038817.1 mouse_genomes_project 4 47326524 47326649 + Gm23746 snoRNA snoRNA MGP_C3HHeJ_T0100663.1 MGP_C3HHeJ_G0038857.1 mouse_genomes_project 4 119499893 119500018 + Gm24352 snoRNA snoRNA MGP_C3HHeJ_T0065884.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86407219 86410813 - MGP_C3HHeJ_P0065884 Rps6 protein_coding protein_coding MGP_C3HHeJ_T0065885.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86407345 86410746 - Rps6 protein_coding processed_transcript MGP_C3HHeJ_T0065886.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86408225 86410755 - Rps6 protein_coding processed_transcript MGP_C3HHeJ_T0065887.1 MGP_C3HHeJ_G0028111.1 mouse_genomes_project 4 86408335 86410733 - Rps6 protein_coding processed_transcript MGP_C3HHeJ_T0064901.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41169894 41177964 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064902.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41169894 41177831 - MGP_C3HHeJ_P0064902 Fancg protein_coding protein_coding MGP_C3HHeJ_T0064903.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41170473 41171484 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064904.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41170562 41174001 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064905.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41170811 41174046 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064906.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41171464 41174314 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064907.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41172763 41176633 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0064908.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41176546 41177646 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064909.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41176637 41177698 - Fancg protein_coding retained_intron MGP_C3HHeJ_T0064910.1 MGP_C3HHeJ_G0027895.1 mouse_genomes_project 4 41177518 41177982 - Fancg protein_coding processed_transcript MGP_C3HHeJ_T0014504.1 MGP_C3HHeJ_G0012608.1 mouse_genomes_project 4 99538157 99538863 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069496.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158179594 158182042 + MGP_C3HHeJ_P0069496 Mxra8 protein_coding protein_coding MGP_C3HHeJ_T0069497.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158179640 158183962 + MGP_C3HHeJ_P0069497 Mxra8 protein_coding protein_coding MGP_C3HHeJ_T0069498.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158179744 158181193 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069499.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182223 158182830 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069500.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182306 158183330 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069501.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182327 158183447 + Mxra8 protein_coding retained_intron MGP_C3HHeJ_T0069502.1 MGP_C3HHeJ_G0028934.1 mouse_genomes_project 4 158182778 158183639 + Mxra8 protein_coding processed_transcript MGP_C3HHeJ_T0007944.1 MGP_C3HHeJ_G0006480.1 mouse_genomes_project 4 152962198 152976181 + Gm13049 lincRNA lincRNA MGP_C3HHeJ_T0069338.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157261381 157278095 + MGP_C3HHeJ_P0069338 Pank4 protein_coding protein_coding MGP_C3HHeJ_T0069339.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157261391 157278162 + MGP_C3HHeJ_P0069339 Pank4 protein_coding protein_coding MGP_C3HHeJ_T0069340.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157267237 157278113 + MGP_C3HHeJ_P0069340 Pank4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069341.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157271771 157278162 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0069342.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157273495 157276379 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0069343.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157273503 157276449 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0069344.1 MGP_C3HHeJ_G0028906.1 mouse_genomes_project 4 157273802 157278158 + Pank4 protein_coding retained_intron MGP_C3HHeJ_T0066438.1 MGP_C3HHeJ_G0028242.1 mouse_genomes_project 4 108091478 108138360 + MGP_C3HHeJ_P0066438 Slc1a7 protein_coding protein_coding MGP_C3HHeJ_T0066439.1 MGP_C3HHeJ_G0028242.1 mouse_genomes_project 4 108133840 108138354 + Slc1a7 protein_coding retained_intron MGP_C3HHeJ_T0004436.1 MGP_C3HHeJ_G0003851.1 mouse_genomes_project 4 116254102 116254362 - Gm29434 antisense antisense MGP_C3HHeJ_T0066177.1 MGP_C3HHeJ_G0028194.1 mouse_genomes_project 4 101909307 101912221 - MGP_C3HHeJ_P0066177 Gm12790 protein_coding protein_coding MGP_C3HHeJ_T0014334.1 MGP_C3HHeJ_G0012438.1 mouse_genomes_project 4 31942459 31942912 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066014.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95737632 95796553 + MGP_C3HHeJ_P0066014 Hook1 protein_coding protein_coding MGP_C3HHeJ_T0066015.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95737755 95786620 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066016.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95737761 95767869 + MGP_C3HHeJ_P0066016 Hook1 protein_coding protein_coding MGP_C3HHeJ_T0066017.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95744778 95793482 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066018.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95772196 95780665 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066019.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95773370 95781058 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066020.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95775476 95793624 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066021.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95784432 95790767 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066022.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95787323 95788817 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066023.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95791150 95793371 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0066024.1 MGP_C3HHeJ_G0028152.1 mouse_genomes_project 4 95792380 95796531 + Hook1 protein_coding processed_transcript MGP_C3HHeJ_T0099380.1 MGP_C3HHeJ_G0037574.1 mouse_genomes_project 4 117473088 117473187 + Gm22335 snRNA snRNA MGP_C3HHeJ_T0067174.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282597 120422551 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067175.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282597 120364335 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067176.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282609 120285586 + MGP_C3HHeJ_P0067176 Hivep3 protein_coding protein_coding MGP_C3HHeJ_T0067177.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120282654 120421445 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067178.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120309956 120421914 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067179.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120363917 120548675 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067180.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120363941 120422551 + Hivep3 protein_coding processed_transcript MGP_C3HHeJ_T0067181.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120364081 120694242 + MGP_C3HHeJ_P0067181 Hivep3 protein_coding protein_coding MGP_C3HHeJ_T0067182.1 MGP_C3HHeJ_G0028403.1 mouse_genomes_project 4 120653063 120689816 + MGP_C3HHeJ_P0067182 Hivep3 protein_coding protein_coding MGP_C3HHeJ_T0068441.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139112949 139152458 + MGP_C3HHeJ_P0068441 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068442.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113570 139118652 + Hp1bp3 protein_coding processed_transcript MGP_C3HHeJ_T0068443.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113596 139122993 + MGP_C3HHeJ_P0068443 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068444.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113597 139150923 + MGP_C3HHeJ_P0068444 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068445.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113600 139152461 + MGP_C3HHeJ_P0068445 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068446.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113604 139125718 + MGP_C3HHeJ_P0068446 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068447.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139113605 139152458 + MGP_C3HHeJ_P0068447 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068448.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139114097 139128004 + MGP_C3HHeJ_P0068448 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068449.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139114244 139127991 + Hp1bp3 protein_coding retained_intron MGP_C3HHeJ_T0068450.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139114270 139120531 + MGP_C3HHeJ_P0068450 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068451.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139125525 139148511 + MGP_C3HHeJ_P0068451 Hp1bp3 protein_coding protein_coding MGP_C3HHeJ_T0068452.1 MGP_C3HHeJ_G0028687.1 mouse_genomes_project 4 139127903 139142385 + Hp1bp3 protein_coding processed_transcript MGP_C3HHeJ_T0067646.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129706925 129737663 + MGP_C3HHeJ_P0067646 Bsdc1 protein_coding protein_coding MGP_C3HHeJ_T0067647.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707016 129712339 + Bsdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067648.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707028 129715523 + Bsdc1 protein_coding retained_intron MGP_C3HHeJ_T0067649.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707028 129712327 + Bsdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067650.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707031 129711312 + Bsdc1 protein_coding retained_intron MGP_C3HHeJ_T0067651.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129707180 129712339 + MGP_C3HHeJ_P0067651 Bsdc1 protein_coding protein_coding MGP_C3HHeJ_T0067652.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129709886 129710891 + Bsdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067653.1 MGP_C3HHeJ_G0028519.1 mouse_genomes_project 4 129717217 129719257 + Bsdc1 protein_coding retained_intron MGP_C3HHeJ_T0065681.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65858789 65874006 + MGP_C3HHeJ_P0065681 Tlr4 protein_coding protein_coding MGP_C3HHeJ_T0065682.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65858818 65961712 + MGP_C3HHeJ_P0065682 Tlr4 protein_coding protein_coding MGP_C3HHeJ_T0065683.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65858824 65870635 + Tlr4 protein_coding processed_transcript MGP_C3HHeJ_T0065684.1 MGP_C3HHeJ_G0028075.1 mouse_genomes_project 4 65859407 65870824 + Tlr4 protein_coding processed_transcript MGP_C3HHeJ_T0010507.1 MGP_C3HHeJ_G0008640.1 mouse_genomes_project 4 43787058 43787126 - Gm22518 miRNA miRNA MGP_C3HHeJ_T0068791.1 MGP_C3HHeJ_G0028794.1 mouse_genomes_project 4 145972077 145982810 - MGP_C3HHeJ_P0068791 Aadacl3 protein_coding protein_coding MGP_C3HHeJ_T0066665.1 MGP_C3HHeJ_G0028285.1 mouse_genomes_project 4 115080369 115114655 + MGP_C3HHeJ_P0066665 Gm12830 protein_coding protein_coding MGP_C3HHeJ_T0067444.1 MGP_C3HHeJ_G0028473.1 mouse_genomes_project 4 126368098 126397434 + MGP_C3HHeJ_P0067444 Col8a2 protein_coding protein_coding MGP_C3HHeJ_T0067445.1 MGP_C3HHeJ_G0028473.1 mouse_genomes_project 4 126383691 126392889 + MGP_C3HHeJ_P0067445 Col8a2 protein_coding protein_coding MGP_C3HHeJ_T0067064.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119131693 119139037 + MGP_C3HHeJ_P0067064 Ebna1bp2 protein_coding protein_coding MGP_C3HHeJ_T0067065.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119131742 119132826 + Ebna1bp2 protein_coding processed_transcript MGP_C3HHeJ_T0067066.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119131744 119132557 + Ebna1bp2 protein_coding processed_transcript MGP_C3HHeJ_T0067067.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119132054 119135453 + MGP_C3HHeJ_P0067067 Ebna1bp2 protein_coding protein_coding MGP_C3HHeJ_T0067068.1 MGP_C3HHeJ_G0028370.1 mouse_genomes_project 4 119132120 119136879 + Ebna1bp2 protein_coding processed_transcript MGP_C3HHeJ_T0065007.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675712 41676805 - MGP_C3HHeJ_P0065007 Arhgef39 protein_coding protein_coding MGP_C3HHeJ_T0065008.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675712 41679266 - MGP_C3HHeJ_P0065008 Arhgef39 protein_coding protein_coding MGP_C3HHeJ_T0065009.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675716 41679190 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065010.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41675718 41676784 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065011.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676094 41679232 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065012.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676391 41679179 - MGP_C3HHeJ_P0065012 Arhgef39 protein_coding protein_coding MGP_C3HHeJ_T0065013.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676790 41678686 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065014.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41676831 41678646 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065015.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41677302 41679182 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0065016.1 MGP_C3HHeJ_G0027907.1 mouse_genomes_project 4 41678717 41679232 - Arhgef39 protein_coding processed_transcript MGP_C3HHeJ_T0066087.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98808934 99009315 - MGP_C3HHeJ_P0066087 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066088.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809117 98829947 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066089.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809118 99009174 - MGP_C3HHeJ_P0066089 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066090.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809120 98906209 - MGP_C3HHeJ_P0066090 Dock7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066091.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809120 99009174 - MGP_C3HHeJ_P0066091 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066092.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98809521 99009174 - MGP_C3HHeJ_P0066092 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066093.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98821755 98822708 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066094.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98821758 98825889 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066095.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98822160 98832351 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066096.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98823065 98835623 - MGP_C3HHeJ_P0066096 Dock7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066097.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98831346 98906166 - MGP_C3HHeJ_P0066097 Dock7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066098.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98832716 98840988 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066099.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98836492 98838499 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066100.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98869883 98891805 - MGP_C3HHeJ_P0066100 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066101.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98871967 98891770 - MGP_C3HHeJ_P0066101 Dock7 protein_coding protein_coding MGP_C3HHeJ_T0066102.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98873204 98875534 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0066103.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98883417 98890980 - Dock7 protein_coding processed_transcript MGP_C3HHeJ_T0066104.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98890440 98938085 - MGP_C3HHeJ_P0066104 Dock7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066108.1 MGP_C3HHeJ_G0028171.1 mouse_genomes_project 4 98947114 98951463 - Dock7 protein_coding retained_intron MGP_C3HHeJ_T0014249.1 MGP_C3HHeJ_G0012353.1 mouse_genomes_project 4 8988401 8988761 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065473.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56094108 56379823 + MGP_C3HHeJ_P0065473 Palm2 protein_coding protein_coding MGP_C3HHeJ_T0065474.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56232591 56379609 + MGP_C3HHeJ_P0065474 Palm2 protein_coding protein_coding MGP_C3HHeJ_T0065476.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56232752 56378036 + MGP_C3HHeJ_P0065476 Palm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065479.1 MGP_C3HHeJ_G0028018.1 mouse_genomes_project 4 56303658 56377296 + Palm2 protein_coding retained_intron MGP_C3HHeJ_T0007935.1 MGP_C3HHeJ_G0006471.1 mouse_genomes_project 4 143508640 143549266 - Gm13052 lincRNA lincRNA MGP_C3HHeJ_T0067704.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129868770 129872744 - MGP_C3HHeJ_P0067704 protein_coding protein_coding MGP_C3HHeJ_T0067705.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129869413 129870675 - protein_coding processed_transcript MGP_C3HHeJ_T0067706.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129870983 129872721 - protein_coding retained_intron MGP_C3HHeJ_T0067707.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129871742 129872741 - MGP_C3HHeJ_P0067707 protein_coding protein_coding MGP_C3HHeJ_T0067708.1 MGP_C3HHeJ_G0028529.1 mouse_genomes_project 4 129871886 129872725 - protein_coding processed_transcript MGP_C3HHeJ_T0067405.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154854 126195108 + MGP_C3HHeJ_P0067405 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067406.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154869 126195109 + MGP_C3HHeJ_P0067406 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067407.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154898 126179215 + MGP_C3HHeJ_P0067407 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067408.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126154932 126168590 + Stk40 protein_coding processed_transcript MGP_C3HHeJ_T0067409.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126169163 126183056 + MGP_C3HHeJ_P0067409 Stk40 protein_coding protein_coding MGP_C3HHeJ_T0067410.1 MGP_C3HHeJ_G0028467.1 mouse_genomes_project 4 126182906 126186884 + Stk40 protein_coding processed_transcript MGP_C3HHeJ_T0014527.1 MGP_C3HHeJ_G0012631.1 mouse_genomes_project 4 107438713 107439729 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068622.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142183584 142196393 - Necap2 protein_coding processed_transcript MGP_C3HHeJ_T0068623.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142183584 142196408 - MGP_C3HHeJ_P0068623 Necap2 protein_coding protein_coding MGP_C3HHeJ_T0068624.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184419 142193108 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068625.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184467 142185911 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068626.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184588 142188912 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068627.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142184635 142190778 - MGP_C3HHeJ_P0068627 Necap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068628.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142185281 142196408 - Necap2 protein_coding processed_transcript MGP_C3HHeJ_T0068629.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142187154 142196408 - Necap2 protein_coding processed_transcript MGP_C3HHeJ_T0068630.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142187224 142188846 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068631.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142187252 142196345 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0068632.1 MGP_C3HHeJ_G0028734.1 mouse_genomes_project 4 142189401 142196408 - Necap2 protein_coding retained_intron MGP_C3HHeJ_T0067203.1 MGP_C3HHeJ_G0028409.1 mouse_genomes_project 4 121153408 121180999 + MGP_C3HHeJ_P0067203 Gm8439 protein_coding protein_coding MGP_C3HHeJ_T0068369.1 MGP_C3HHeJ_G0028674.1 mouse_genomes_project 4 137782878 137853520 - MGP_C3HHeJ_P0068369 Zbtb40 protein_coding unknown_likely_coding MGP_C3HHeJ_T0068370.1 MGP_C3HHeJ_G0028674.1 mouse_genomes_project 4 137782881 137853427 - MGP_C3HHeJ_P0068370 Zbtb40 protein_coding protein_coding MGP_C3HHeJ_T0068371.1 MGP_C3HHeJ_G0028674.1 mouse_genomes_project 4 137817266 137853533 - Zbtb40 protein_coding retained_intron MGP_C3HHeJ_T0064590.1 MGP_C3HHeJ_G0027814.1 mouse_genomes_project 4 30434430 30479174 + MGP_C3HHeJ_P0064590 Rragd protein_coding protein_coding MGP_C3HHeJ_T0064591.1 MGP_C3HHeJ_G0027814.1 mouse_genomes_project 4 30434836 30475793 + MGP_C3HHeJ_P0064591 Rragd protein_coding protein_coding MGP_C3HHeJ_T0064592.1 MGP_C3HHeJ_G0027814.1 mouse_genomes_project 4 30457626 30475813 + Rragd protein_coding processed_transcript MGP_C3HHeJ_T0004382.1 MGP_C3HHeJ_G0003813.1 mouse_genomes_project 4 50950913 50960730 - Smc2os antisense antisense MGP_C3HHeJ_T0067155.1 MGP_C3HHeJ_G0028398.1 mouse_genomes_project 4 120005036 120035280 - MGP_C3HHeJ_P0067155 Rimkla protein_coding protein_coding MGP_C3HHeJ_T0067156.1 MGP_C3HHeJ_G0028398.1 mouse_genomes_project 4 120014277 120035161 - Rimkla protein_coding processed_transcript MGP_C3HHeJ_T0014452.1 MGP_C3HHeJ_G0012556.1 mouse_genomes_project 4 79194414 79194817 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069592.1 MGP_C3HHeJ_G0028954.1 mouse_genomes_project 4 158600607 158607235 - MGP_C3HHeJ_P0069592 protein_coding protein_coding MGP_C3HHeJ_T0014467.1 MGP_C3HHeJ_G0012571.1 mouse_genomes_project 4 85951576 85951905 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065685.1 MGP_C3HHeJ_G0028076.1 mouse_genomes_project 4 67841284 68047262 - MGP_C3HHeJ_P0065685 Brinp1 protein_coding protein_coding MGP_C3HHeJ_T0065686.1 MGP_C3HHeJ_G0028076.1 mouse_genomes_project 4 67876013 67924335 - Brinp1 protein_coding processed_transcript MGP_C3HHeJ_T0065687.1 MGP_C3HHeJ_G0028076.1 mouse_genomes_project 4 67910519 67913345 - Brinp1 protein_coding processed_transcript MGP_C3HHeJ_T0064868.1 MGP_C3HHeJ_G0027888.1 mouse_genomes_project 4 40701523 40702189 + MGP_C3HHeJ_P0064868 protein_coding protein_coding MGP_C3HHeJ_T0007747.1 MGP_C3HHeJ_G0006329.1 mouse_genomes_project 4 41199993 41201475 + Gm26643 lincRNA lincRNA MGP_C3HHeJ_T0067260.1 MGP_C3HHeJ_G0028428.1 mouse_genomes_project 4 122908113 122949420 + Trit1 protein_coding processed_transcript MGP_C3HHeJ_T0067261.1 MGP_C3HHeJ_G0028428.1 mouse_genomes_project 4 122908113 122949420 + MGP_C3HHeJ_P0067261 Trit1 protein_coding protein_coding MGP_C3HHeJ_T0067262.1 MGP_C3HHeJ_G0028428.1 mouse_genomes_project 4 122943226 122948674 + Trit1 protein_coding processed_transcript MGP_C3HHeJ_T0100680.1 MGP_C3HHeJ_G0038874.1 mouse_genomes_project 4 132789636 132789841 - Snora73b snoRNA snoRNA MGP_C3HHeJ_T0007771.1 MGP_C3HHeJ_G0006348.1 mouse_genomes_project 4 54571946 54596669 - Gm12519 lincRNA lincRNA MGP_C3HHeJ_T0064831.1 MGP_C3HHeJ_G0027875.1 mouse_genomes_project 4 39707615 39708204 - MGP_C3HHeJ_P0064831 protein_coding protein_coding MGP_C3HHeJ_T0014538.1 MGP_C3HHeJ_G0012642.1 mouse_genomes_project 4 109969339 109969743 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014446.1 MGP_C3HHeJ_G0012550.1 mouse_genomes_project 4 75967466 75967860 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014627.1 MGP_C3HHeJ_G0012731.1 mouse_genomes_project 4 137056990 137057513 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064471.1 MGP_C3HHeJ_G0027790.1 mouse_genomes_project 4 18804315 18813860 - MGP_C3HHeJ_P0064471 Tstd3 protein_coding protein_coding MGP_C3HHeJ_T0014511.1 MGP_C3HHeJ_G0012615.1 mouse_genomes_project 4 101335815 101386333 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068468.1 MGP_C3HHeJ_G0028693.1 mouse_genomes_project 4 139312480 139314918 - MGP_C3HHeJ_P0068468 Fam43b protein_coding protein_coding MGP_C3HHeJ_T0064686.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38109211 38113990 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064687.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38109215 38128176 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064688.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38110287 38147115 - MGP_C3HHeJ_P0064688 Ddx58 protein_coding protein_coding MGP_C3HHeJ_T0064689.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38113623 38114244 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064690.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38114219 38120904 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064691.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38114301 38146987 - MGP_C3HHeJ_P0064691 Ddx58 protein_coding protein_coding MGP_C3HHeJ_T0064692.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38131006 38147042 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064693.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38131451 38147009 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064694.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38134089 38135876 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0064695.1 MGP_C3HHeJ_G0027839.1 mouse_genomes_project 4 38134578 38147112 - Ddx58 protein_coding processed_transcript MGP_C3HHeJ_T0010542.1 MGP_C3HHeJ_G0008675.1 mouse_genomes_project 4 132391168 132391240 - Gm27445 miRNA miRNA MGP_C3HHeJ_T0014359.1 MGP_C3HHeJ_G0012463.1 mouse_genomes_project 4 39210819 39211047 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010558.1 MGP_C3HHeJ_G0008691.1 mouse_genomes_project 4 139240482 139240592 - Gm27646 miRNA miRNA MGP_C3HHeJ_T0014375.1 MGP_C3HHeJ_G0012479.1 mouse_genomes_project 4 47800480 47805166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007798.1 MGP_C3HHeJ_G0006371.1 mouse_genomes_project 4 83452910 83455751 - 6030471H07Rik lincRNA lincRNA MGP_C3HHeJ_T0014408.1 MGP_C3HHeJ_G0012512.1 mouse_genomes_project 4 58301123 58301391 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069589.1 MGP_C3HHeJ_G0028952.1 mouse_genomes_project 4 158587326 158592878 + MGP_C3HHeJ_P0069589 Perm1 protein_coding protein_coding MGP_C3HHeJ_T0101989.1 MGP_C3HHeJ_G0039954.1 mouse_genomes_project 4 62275053 62276865 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010490.1 MGP_C3HHeJ_G0008623.1 mouse_genomes_project 4 10467813 10467928 - Gm23162 miRNA miRNA MGP_C3HHeJ_T0064529.1 MGP_C3HHeJ_G0027801.1 mouse_genomes_project 4 22330449 22371180 - MGP_C3HHeJ_P0064529 Fhl5 protein_coding protein_coding MGP_C3HHeJ_T0064530.1 MGP_C3HHeJ_G0027801.1 mouse_genomes_project 4 22330449 22371180 - MGP_C3HHeJ_P0064530 Fhl5 protein_coding protein_coding MGP_C3HHeJ_T0004373.1 MGP_C3HHeJ_G0003806.1 mouse_genomes_project 4 42908312 42929177 + Gm12462 antisense antisense MGP_C3HHeJ_T0004501.1 MGP_C3HHeJ_G0003904.1 mouse_genomes_project 4 143055480 143067106 + Fhad1os2 antisense antisense MGP_C3HHeJ_T0014629.1 MGP_C3HHeJ_G0012733.1 mouse_genomes_project 4 138033065 138033733 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004356.1 MGP_C3HHeJ_G0003792.1 mouse_genomes_project 4 21925331 21932962 + Gm11899 antisense antisense MGP_C3HHeJ_T0007734.1 MGP_C3HHeJ_G0006316.1 mouse_genomes_project 4 23791463 23860434 - 4930548K13Rik lincRNA lincRNA MGP_C3HHeJ_T0066691.1 MGP_C3HHeJ_G0028293.1 mouse_genomes_project 4 115430295 115437979 - MGP_C3HHeJ_P0066691 Cyp4a29 protein_coding protein_coding MGP_C3HHeJ_T0007778.1 MGP_C3HHeJ_G0006353.1 mouse_genomes_project 4 57329747 57339921 - Gm12580 lincRNA lincRNA MGP_C3HHeJ_T0010540.1 MGP_C3HHeJ_G0008673.1 mouse_genomes_project 4 129950975 129951047 - Mir7016 miRNA miRNA MGP_C3HHeJ_T0068748.1 MGP_C3HHeJ_G0028764.1 mouse_genomes_project 4 144521728 144554582 - MGP_C3HHeJ_P0068748 Pdpn protein_coding protein_coding MGP_C3HHeJ_T0068749.1 MGP_C3HHeJ_G0028764.1 mouse_genomes_project 4 144522643 144554481 - MGP_C3HHeJ_P0068749 Pdpn protein_coding protein_coding MGP_C3HHeJ_T0065354.1 MGP_C3HHeJ_G0027984.1 mouse_genomes_project 4 48011968 48026001 - MGP_C3HHeJ_P0065354 Aldob protein_coding protein_coding MGP_C3HHeJ_T0065355.1 MGP_C3HHeJ_G0027984.1 mouse_genomes_project 4 48013007 48014840 - Aldob protein_coding processed_transcript MGP_C3HHeJ_T0065356.1 MGP_C3HHeJ_G0027984.1 mouse_genomes_project 4 48014510 48015860 - Aldob protein_coding processed_transcript MGP_C3HHeJ_T0100610.1 MGP_C3HHeJ_G0038804.1 mouse_genomes_project 4 25628646 25628775 + Gm25378 snoRNA snoRNA MGP_C3HHeJ_T0064286.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6182624 6212020 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064287.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6183634 6404311 - MGP_C3HHeJ_P0064287 Asph protein_coding protein_coding MGP_C3HHeJ_T0064288.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6183634 6404311 - MGP_C3HHeJ_P0064288 Asph protein_coding protein_coding MGP_C3HHeJ_T0064289.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6183634 6404493 - MGP_C3HHeJ_P0064289 Asph protein_coding protein_coding MGP_C3HHeJ_T0064290.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317274 6330857 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064291.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6378821 - MGP_C3HHeJ_P0064291 Asph protein_coding protein_coding MGP_C3HHeJ_T0064292.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6378821 - MGP_C3HHeJ_P0064292 Asph protein_coding protein_coding MGP_C3HHeJ_T0064293.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6378821 - MGP_C3HHeJ_P0064293 Asph protein_coding protein_coding MGP_C3HHeJ_T0064294.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6404311 - MGP_C3HHeJ_P0064294 Asph protein_coding protein_coding MGP_C3HHeJ_T0064295.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6317667 6404311 - MGP_C3HHeJ_P0064295 Asph protein_coding protein_coding MGP_C3HHeJ_T0064296.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6339457 6374358 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064297.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6342583 6378821 - MGP_C3HHeJ_P0064297 Asph protein_coding protein_coding MGP_C3HHeJ_T0064298.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6345630 6404311 - MGP_C3HHeJ_P0064298 Asph protein_coding protein_coding MGP_C3HHeJ_T0064299.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6355739 6378821 - MGP_C3HHeJ_P0064299 Asph protein_coding protein_coding MGP_C3HHeJ_T0064300.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6356526 6404311 - MGP_C3HHeJ_P0064300 Asph protein_coding protein_coding MGP_C3HHeJ_T0064301.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6363899 6404311 - MGP_C3HHeJ_P0064301 Asph protein_coding protein_coding MGP_C3HHeJ_T0064302.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6365425 6404311 - MGP_C3HHeJ_P0064302 Asph protein_coding protein_coding MGP_C3HHeJ_T0064303.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6365804 6404470 - MGP_C3HHeJ_P0064303 Asph protein_coding protein_coding MGP_C3HHeJ_T0064304.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6367994 6378821 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0064305.1 MGP_C3HHeJ_G0027742.1 mouse_genomes_project 4 6403452 6404226 - Asph protein_coding processed_transcript MGP_C3HHeJ_T0099379.1 MGP_C3HHeJ_G0037573.1 mouse_genomes_project 4 117346863 117346968 + Gm26355 snRNA snRNA MGP_C3HHeJ_T0014471.1 MGP_C3HHeJ_G0012575.1 mouse_genomes_project 4 87768640 87768915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064771.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39484778 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064772.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39484768 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064773.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39484773 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064774.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39488467 - MGP_C3HHeJ_P0064774 1110017D15Rik protein_coding protein_coding MGP_C3HHeJ_T0064775.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39494438 - MGP_C3HHeJ_P0064775 1110017D15Rik protein_coding protein_coding MGP_C3HHeJ_T0064776.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39482023 39494438 - MGP_C3HHeJ_P0064776 1110017D15Rik protein_coding protein_coding MGP_C3HHeJ_T0064777.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39484138 39494433 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0064778.1 MGP_C3HHeJ_G0027861.1 mouse_genomes_project 4 39485531 39485962 - 1110017D15Rik protein_coding processed_transcript MGP_C3HHeJ_T0001398.1 MGP_C3HHeJ_G0001328.1 mouse_genomes_project 4 158372288 158376402 - TEC TEC MGP_C3HHeJ_T0014437.1 MGP_C3HHeJ_G0012541.1 mouse_genomes_project 4 74215600 74215801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069124.1 MGP_C3HHeJ_G0028867.1 mouse_genomes_project 4 154158481 154165740 - MGP_C3HHeJ_P0069124 Thap3 protein_coding protein_coding MGP_C3HHeJ_T0069125.1 MGP_C3HHeJ_G0028867.1 mouse_genomes_project 4 154158644 154165713 - MGP_C3HHeJ_P0069125 Thap3 protein_coding protein_coding MGP_C3HHeJ_T0069126.1 MGP_C3HHeJ_G0028867.1 mouse_genomes_project 4 154162215 154165723 - Thap3 protein_coding retained_intron MGP_C3HHeJ_T0014232.1 MGP_C3HHeJ_G0012336.1 mouse_genomes_project 4 3200682 3201428 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004450.1 MGP_C3HHeJ_G0003864.1 mouse_genomes_project 4 120852427 120869360 + Foxo6os antisense antisense MGP_C3HHeJ_T0065262.1 MGP_C3HHeJ_G0027958.1 mouse_genomes_project 4 44788379 44810117 + MGP_C3HHeJ_P0065262 Anp32b protein_coding protein_coding MGP_C3HHeJ_T0014353.1 MGP_C3HHeJ_G0012457.1 mouse_genomes_project 4 37970422 37972310 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068996.1 MGP_C3HHeJ_G0028844.1 mouse_genomes_project 4 151556377 151604974 + MGP_C3HHeJ_P0068996 Ctnnbip1 protein_coding protein_coding MGP_C3HHeJ_T0068997.1 MGP_C3HHeJ_G0028844.1 mouse_genomes_project 4 151583111 151603045 + MGP_C3HHeJ_P0068997 Ctnnbip1 protein_coding protein_coding MGP_C3HHeJ_T0064818.1 MGP_C3HHeJ_G0027872.1 mouse_genomes_project 4 39699023 39707906 - MGP_C3HHeJ_P0064818 protein_coding protein_coding MGP_C3HHeJ_T0064832.1 MGP_C3HHeJ_G0027872.1 mouse_genomes_project 4 39707615 39708201 - MGP_C3HHeJ_P0064832 protein_coding protein_coding MGP_C3HHeJ_T0067680.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854856 129861549 + MGP_C3HHeJ_P0067680 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067681.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854856 129861959 + MGP_C3HHeJ_P0067681 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067682.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854857 129873241 + MGP_C3HHeJ_P0067682 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067683.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854868 129862370 + MGP_C3HHeJ_P0067683 Tmem234 protein_coding protein_coding MGP_C3HHeJ_T0067684.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854869 129861538 + MGP_C3HHeJ_P0067684 Tmem234 protein_coding protein_coding MGP_C3HHeJ_T0067685.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854875 129861728 + MGP_C3HHeJ_P0067685 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067686.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854879 129861573 + MGP_C3HHeJ_P0067686 Tmem234 protein_coding protein_coding MGP_C3HHeJ_T0067687.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854879 129861804 + MGP_C3HHeJ_P0067687 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067688.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854879 129877509 + MGP_C3HHeJ_P0067688 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067689.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854883 129861804 + MGP_C3HHeJ_P0067689 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067690.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854888 129862363 + MGP_C3HHeJ_P0067690 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067691.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854889 129861153 + MGP_C3HHeJ_P0067691 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067692.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854890 129861804 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067693.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854891 129861170 + MGP_C3HHeJ_P0067693 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067694.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854892 129856888 + Tmem234 protein_coding processed_transcript MGP_C3HHeJ_T0067695.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129854895 129855638 + MGP_C3HHeJ_P0067695 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067696.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855171 129861684 + MGP_C3HHeJ_P0067696 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067697.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855171 129856119 + MGP_C3HHeJ_P0067697 Tmem234 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067698.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855276 129855939 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067699.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129855380 129856406 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067700.1 MGP_C3HHeJ_G0028527.1 mouse_genomes_project 4 129856199 129861321 + Tmem234 protein_coding retained_intron MGP_C3HHeJ_T0067015.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118639816 118685473 - MGP_C3HHeJ_P0067015 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067016.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118639818 118685084 - MGP_C3HHeJ_P0067016 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067017.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118639865 118685408 - MGP_C3HHeJ_P0067017 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067018.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118645101 118685376 - MGP_C3HHeJ_P0067018 Kdm4a protein_coding protein_coding MGP_C3HHeJ_T0067019.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118648841 118649816 - Kdm4a protein_coding processed_transcript MGP_C3HHeJ_T0067020.1 MGP_C3HHeJ_G0028359.1 mouse_genomes_project 4 118652107 118664781 - Kdm4a protein_coding processed_transcript MGP_C3HHeJ_T0099393.1 MGP_C3HHeJ_G0037587.1 mouse_genomes_project 4 130182565 130182717 + Gm23845 snRNA snRNA MGP_C3HHeJ_T0064816.1 MGP_C3HHeJ_G0027871.1 mouse_genomes_project 4 39699023 39700764 - MGP_C3HHeJ_P0064816 protein_coding protein_coding MGP_C3HHeJ_T0064817.1 MGP_C3HHeJ_G0027871.1 mouse_genomes_project 4 39699023 39699716 - MGP_C3HHeJ_P0064817 protein_coding protein_coding MGP_C3HHeJ_T0067157.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120074348 120084162 - MGP_C3HHeJ_P0067157 AA415398 protein_coding protein_coding MGP_C3HHeJ_T0067158.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120075476 120080634 - AA415398 protein_coding processed_transcript MGP_C3HHeJ_T0067159.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120075703 120084523 - AA415398 protein_coding processed_transcript MGP_C3HHeJ_T0067160.1 MGP_C3HHeJ_G0028399.1 mouse_genomes_project 4 120078932 120084922 - AA415398 protein_coding processed_transcript MGP_C3HHeJ_T0099332.1 MGP_C3HHeJ_G0037526.1 mouse_genomes_project 4 22965275 22965378 - Gm24042 snRNA snRNA MGP_C3HHeJ_T0007808.1 MGP_C3HHeJ_G0006379.1 mouse_genomes_project 4 91668394 91669493 - 4930577H14Rik lincRNA lincRNA MGP_C3HHeJ_T0007742.1 MGP_C3HHeJ_G0006324.1 mouse_genomes_project 4 36448594 36760895 - lincRNA lincRNA MGP_C3HHeJ_T0065542.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58237244 58317523 - MGP_C3HHeJ_P0065542 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065543.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58240632 58317652 - MGP_C3HHeJ_P0065543 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065544.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58242308 58251059 - Ptbp3 protein_coding retained_intron MGP_C3HHeJ_T0065545.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58246733 58258504 - MGP_C3HHeJ_P0065545 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065546.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58246738 58317620 - MGP_C3HHeJ_P0065546 Ptbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065547.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58258407 58317625 - MGP_C3HHeJ_P0065547 Ptbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065548.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58258457 58317633 - MGP_C3HHeJ_P0065548 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0065549.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58268328 58283041 - Ptbp3 protein_coding retained_intron MGP_C3HHeJ_T0065550.1 MGP_C3HHeJ_G0028037.1 mouse_genomes_project 4 58285849 58317105 - MGP_C3HHeJ_P0065550 Ptbp3 protein_coding protein_coding MGP_C3HHeJ_T0069476.1 MGP_C3HHeJ_G0028930.1 mouse_genomes_project 4 158126056 158128790 + MGP_C3HHeJ_P0069476 Ankrd65 protein_coding protein_coding MGP_C3HHeJ_T0069477.1 MGP_C3HHeJ_G0028930.1 mouse_genomes_project 4 158126789 158135781 + MGP_C3HHeJ_P0069477 Ankrd65 protein_coding protein_coding MGP_C3HHeJ_T0069303.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069304.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069304 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069305.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069305 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069306.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069306 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069307.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069307 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069308.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069308 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069309.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156607674 156939995 - MGP_C3HHeJ_P0069309 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069310.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156614883 156627374 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069311.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156620766 156627444 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069313.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156638642 156640961 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069314.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156647826 156940002 - MGP_C3HHeJ_P0069314 Prdm16 protein_coding protein_coding MGP_C3HHeJ_T0069315.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156773333 156827985 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0069316.1 MGP_C3HHeJ_G0028898.1 mouse_genomes_project 4 156773364 156939926 - Prdm16 protein_coding processed_transcript MGP_C3HHeJ_T0064242.1 MGP_C3HHeJ_G0027733.1 mouse_genomes_project 4 2839816 2876676 + MGP_C3HHeJ_P0064242 Ubxn2b protein_coding protein_coding MGP_C3HHeJ_T0014312.1 MGP_C3HHeJ_G0012416.1 mouse_genomes_project 4 25748181 25748528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065675.1 MGP_C3HHeJ_G0028073.1 mouse_genomes_project 4 64372944 65436441 - MGP_C3HHeJ_P0065675 Astn2 protein_coding protein_coding MGP_C3HHeJ_T0065676.1 MGP_C3HHeJ_G0028073.1 mouse_genomes_project 4 64372944 65436313 - MGP_C3HHeJ_P0065676 Astn2 protein_coding protein_coding MGP_C3HHeJ_T0067527.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127301205 127372860 + MGP_C3HHeJ_P0067527 Dlgap3 protein_coding protein_coding MGP_C3HHeJ_T0067528.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127304901 127372860 + MGP_C3HHeJ_P0067528 Dlgap3 protein_coding protein_coding MGP_C3HHeJ_T0067529.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127327644 127372206 + MGP_C3HHeJ_P0067529 Dlgap3 protein_coding protein_coding MGP_C3HHeJ_T0067530.1 MGP_C3HHeJ_G0028490.1 mouse_genomes_project 4 127337826 127350223 + Dlgap3 protein_coding processed_transcript MGP_C3HHeJ_T0099390.1 MGP_C3HHeJ_G0037584.1 mouse_genomes_project 4 127239830 127239936 - Gm25600 snRNA snRNA MGP_C3HHeJ_T0017851.1 MGP_C3HHeJ_G0015327.1 mouse_genomes_project 4 109770047 109869625 + Gm12811 processed_transcript processed_transcript MGP_C3HHeJ_T0014381.1 MGP_C3HHeJ_G0012485.1 mouse_genomes_project 4 50760285 50762577 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014653.1 MGP_C3HHeJ_G0012757.1 mouse_genomes_project 4 151535273 151535692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014254.1 MGP_C3HHeJ_G0012358.1 mouse_genomes_project 4 11628899 11629130 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007793.1 MGP_C3HHeJ_G0006368.1 mouse_genomes_project 4 81395527 81433973 + Gm5860 lincRNA lincRNA MGP_C3HHeJ_T0007794.1 MGP_C3HHeJ_G0006368.1 mouse_genomes_project 4 81395969 81397844 + Gm5860 lincRNA lincRNA MGP_C3HHeJ_T0007795.1 MGP_C3HHeJ_G0006368.1 mouse_genomes_project 4 81396053 81433838 + Gm5860 lincRNA lincRNA MGP_C3HHeJ_T0014275.1 MGP_C3HHeJ_G0012379.1 mouse_genomes_project 4 15467411 15469521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014649.1 MGP_C3HHeJ_G0012753.1 mouse_genomes_project 4 149960881 149961659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014575.1 MGP_C3HHeJ_G0012679.1 mouse_genomes_project 4 121717325 121717748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014286.1 MGP_C3HHeJ_G0012390.1 mouse_genomes_project 4 19187105 19187504 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064938.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230004 41331010 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064939.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230020 41431203 + MGP_C3HHeJ_P0064939 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064940.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230027 41336360 + Unc13b protein_coding processed_transcript MGP_C3HHeJ_T0064941.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230035 41333443 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064942.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230124 41429960 + MGP_C3HHeJ_P0064942 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064943.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230124 41429960 + MGP_C3HHeJ_P0064943 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064944.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230131 41429943 + MGP_C3HHeJ_P0064944 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064945.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41230315 41348004 + MGP_C3HHeJ_P0064945 Unc13b protein_coding unknown_likely_coding MGP_C3HHeJ_T0064946.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41286585 41402190 + Unc13b protein_coding processed_transcript MGP_C3HHeJ_T0064947.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41342837 41396956 + Unc13b protein_coding processed_transcript MGP_C3HHeJ_T0064948.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41345450 41401508 + MGP_C3HHeJ_P0064948 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064949.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41373821 41410927 + MGP_C3HHeJ_P0064949 Unc13b protein_coding unknown_likely_coding MGP_C3HHeJ_T0064950.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41394522 41397371 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064951.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41398220 41411586 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064952.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41414313 41421411 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0064953.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41420689 41423567 + MGP_C3HHeJ_P0064953 Unc13b protein_coding protein_coding MGP_C3HHeJ_T0064954.1 MGP_C3HHeJ_G0027899.1 mouse_genomes_project 4 41421976 41426886 + Unc13b protein_coding retained_intron MGP_C3HHeJ_T0068340.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243752 137323174 + MGP_C3HHeJ_P0068340 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068341.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243752 137323170 + MGP_C3HHeJ_P0068341 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068342.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243795 137295073 + Luzp1 protein_coding retained_intron MGP_C3HHeJ_T0068343.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137243842 137314524 + MGP_C3HHeJ_P0068343 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068344.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137294756 137320248 + MGP_C3HHeJ_P0068344 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068345.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137314210 137323173 + MGP_C3HHeJ_P0068345 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0068346.1 MGP_C3HHeJ_G0028665.1 mouse_genomes_project 4 137319118 137328642 + MGP_C3HHeJ_P0068346 Luzp1 protein_coding protein_coding MGP_C3HHeJ_T0001383.1 MGP_C3HHeJ_G0001314.1 mouse_genomes_project 4 108782561 108784849 - TEC TEC MGP_C3HHeJ_T0065001.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672468 41673774 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0065002.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672930 41675490 + MGP_C3HHeJ_P0065002 Ccdc107 protein_coding protein_coding MGP_C3HHeJ_T0065003.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672945 41673379 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0065004.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672957 41675490 + MGP_C3HHeJ_P0065004 Ccdc107 protein_coding protein_coding MGP_C3HHeJ_T0065005.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672985 41675433 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0065006.1 MGP_C3HHeJ_G0027906.1 mouse_genomes_project 4 41672985 41675440 + Ccdc107 protein_coding processed_transcript MGP_C3HHeJ_T0068489.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139759285 139779840 - MGP_C3HHeJ_P0068489 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068490.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139759285 139779833 - MGP_C3HHeJ_P0068490 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068491.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139759290 139826897 - MGP_C3HHeJ_P0068491 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068492.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139760389 139772677 - MGP_C3HHeJ_P0068492 Pla2g5 protein_coding protein_coding MGP_C3HHeJ_T0068493.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139760595 139772723 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068494.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139764636 139779835 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068495.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139764650 139779806 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068496.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139766259 139769828 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0068497.1 MGP_C3HHeJ_G0028701.1 mouse_genomes_project 4 139821627 139826877 - Pla2g5 protein_coding processed_transcript MGP_C3HHeJ_T0066404.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920198 107994261 + MGP_C3HHeJ_P0066404 Lrp8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066405.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920214 107992910 + MGP_C3HHeJ_P0066405 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066406.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920251 107993993 + MGP_C3HHeJ_P0066406 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066407.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920350 107992910 + MGP_C3HHeJ_P0066407 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066408.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920350 107992444 + MGP_C3HHeJ_P0066408 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066409.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107920778 107970402 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0066410.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107921187 107992910 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0066411.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107942266 107992910 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0066412.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107950052 107956293 + Lrp8 protein_coding retained_intron MGP_C3HHeJ_T0066413.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107950072 107996934 + MGP_C3HHeJ_P0066413 Lrp8 protein_coding protein_coding MGP_C3HHeJ_T0066414.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107965242 107967337 + Lrp8 protein_coding retained_intron MGP_C3HHeJ_T0066415.1 MGP_C3HHeJ_G0028238.1 mouse_genomes_project 4 107969167 107975902 + Lrp8 protein_coding processed_transcript MGP_C3HHeJ_T0100682.1 MGP_C3HHeJ_G0038876.1 mouse_genomes_project 4 134745386 134745474 - Gm27619 snoRNA snoRNA MGP_C3HHeJ_T0069047.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152317639 152325336 + MGP_C3HHeJ_P0069047 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069048.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152317870 152330219 + MGP_C3HHeJ_P0069048 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069049.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318158 152323775 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069050.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318158 152326395 + MGP_C3HHeJ_P0069050 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069051.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318161 152320863 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069052.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152318623 152323190 + MGP_C3HHeJ_P0069052 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069053.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152324532 152330213 + MGP_C3HHeJ_P0069053 Eno1 protein_coding protein_coding MGP_C3HHeJ_T0069054.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152325281 152328232 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069055.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152327750 152328897 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0069056.1 MGP_C3HHeJ_G0028855.1 mouse_genomes_project 4 152328799 152329627 + Eno1 protein_coding retained_intron MGP_C3HHeJ_T0004384.1 MGP_C3HHeJ_G0003815.1 mouse_genomes_project 4 52126507 52128222 - 1700060J05Rik antisense antisense MGP_C3HHeJ_T0068339.1 MGP_C3HHeJ_G0028664.1 mouse_genomes_project 4 137235616 137237318 + MGP_C3HHeJ_P0068339 6030445D17Rik protein_coding protein_coding MGP_C3HHeJ_T0010548.1 MGP_C3HHeJ_G0008681.1 mouse_genomes_project 4 134260520 134260579 - Mir7227 miRNA miRNA MGP_C3HHeJ_T0067566.1 MGP_C3HHeJ_G0028502.1 mouse_genomes_project 4 128948900 128962762 + MGP_C3HHeJ_P0067566 A3galt2 protein_coding protein_coding MGP_C3HHeJ_T0067567.1 MGP_C3HHeJ_G0028502.1 mouse_genomes_project 4 128952794 128963472 + MGP_C3HHeJ_P0067567 A3galt2 protein_coding protein_coding MGP_C3HHeJ_T0099373.1 MGP_C3HHeJ_G0037567.1 mouse_genomes_project 4 108652695 108652798 + Gm23138 snRNA snRNA MGP_C3HHeJ_T0065710.1 MGP_C3HHeJ_G0028083.1 mouse_genomes_project 4 73056719 73059100 - 2310002L09Rik protein_coding processed_transcript MGP_C3HHeJ_T0065711.1 MGP_C3HHeJ_G0028083.1 mouse_genomes_project 4 73056719 73068145 - MGP_C3HHeJ_P0065711 2310002L09Rik protein_coding protein_coding MGP_C3HHeJ_T0065712.1 MGP_C3HHeJ_G0028083.1 mouse_genomes_project 4 73058877 73068144 - MGP_C3HHeJ_P0065712 2310002L09Rik protein_coding protein_coding MGP_C3HHeJ_T0065533.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57876449 57975116 + MGP_C3HHeJ_P0065533 Ugcg protein_coding protein_coding MGP_C3HHeJ_T0065534.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57876747 57899493 + Ugcg protein_coding processed_transcript MGP_C3HHeJ_T0065535.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57899009 57901201 + Ugcg protein_coding processed_transcript MGP_C3HHeJ_T0065536.1 MGP_C3HHeJ_G0028035.1 mouse_genomes_project 4 57899945 57901585 + Ugcg protein_coding processed_transcript MGP_C3HHeJ_T0001393.1 MGP_C3HHeJ_G0001323.1 mouse_genomes_project 4 144020436 144020655 + TEC TEC MGP_C3HHeJ_T0067605.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129358583 129399752 - MGP_C3HHeJ_P0067605 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067606.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129358583 129399715 - MGP_C3HHeJ_P0067606 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067607.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129358583 129399900 - MGP_C3HHeJ_P0067607 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067608.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129359979 129392694 - MGP_C3HHeJ_P0067608 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067609.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361154 129399750 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067610.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361433 129399750 - S100pbp protein_coding retained_intron MGP_C3HHeJ_T0067611.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361433 129390586 - S100pbp protein_coding retained_intron MGP_C3HHeJ_T0067612.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361639 129399685 - MGP_C3HHeJ_P0067612 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067613.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129361639 129399782 - MGP_C3HHeJ_P0067613 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067614.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129373704 129399790 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067615.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129378930 129388915 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067616.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129387774 129399799 - MGP_C3HHeJ_P0067616 S100pbp protein_coding protein_coding MGP_C3HHeJ_T0067617.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129391905 129399843 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0067618.1 MGP_C3HHeJ_G0028511.1 mouse_genomes_project 4 129391963 129399671 - S100pbp protein_coding processed_transcript MGP_C3HHeJ_T0065969.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94316262 94325171 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0065970.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94317915 94352924 - MGP_C3HHeJ_P0065970 Plaa protein_coding protein_coding MGP_C3HHeJ_T0065971.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94320435 94332357 - MGP_C3HHeJ_P0065971 Plaa protein_coding protein_coding MGP_C3HHeJ_T0065972.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94322644 94332336 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0065973.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94334618 94352815 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0065974.1 MGP_C3HHeJ_G0028144.1 mouse_genomes_project 4 94338552 94352861 - Plaa protein_coding processed_transcript MGP_C3HHeJ_T0017818.1 MGP_C3HHeJ_G0015303.1 mouse_genomes_project 4 32804839 32814667 + Gm12367 processed_transcript processed_transcript MGP_C3HHeJ_T0017819.1 MGP_C3HHeJ_G0015303.1 mouse_genomes_project 4 32804857 32814765 + Gm12367 processed_transcript processed_transcript MGP_C3HHeJ_T0017820.1 MGP_C3HHeJ_G0015303.1 mouse_genomes_project 4 32804874 32843424 + Gm12367 processed_transcript processed_transcript MGP_C3HHeJ_T0066924.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117616518 117640829 - MGP_C3HHeJ_P0066924 Kif2c protein_coding protein_coding MGP_C3HHeJ_T0066925.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117617022 117636172 - MGP_C3HHeJ_P0066925 Kif2c protein_coding protein_coding MGP_C3HHeJ_T0066926.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117621557 117622291 - Kif2c protein_coding retained_intron MGP_C3HHeJ_T0066927.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117631104 117640732 - Kif2c protein_coding retained_intron MGP_C3HHeJ_T0066928.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117631106 117640796 - Kif2c protein_coding processed_transcript MGP_C3HHeJ_T0066929.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117631844 117640782 - Kif2c protein_coding retained_intron MGP_C3HHeJ_T0066930.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117632385 117636154 - Kif2c protein_coding processed_transcript MGP_C3HHeJ_T0066931.1 MGP_C3HHeJ_G0028343.1 mouse_genomes_project 4 117632428 117636170 - MGP_C3HHeJ_P0066931 Kif2c protein_coding protein_coding MGP_C3HHeJ_T0100643.1 MGP_C3HHeJ_G0038837.1 mouse_genomes_project 4 73756701 73756833 + Gm26379 snoRNA snoRNA MGP_C3HHeJ_T0068726.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143060277 143186818 - MGP_C3HHeJ_P0068726 Fhad1 protein_coding protein_coding MGP_C3HHeJ_T0068727.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143060694 143183404 - MGP_C3HHeJ_P0068727 Fhad1 protein_coding protein_coding MGP_C3HHeJ_T0068728.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143060694 143186826 - MGP_C3HHeJ_P0068728 Fhad1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0068729.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143087345 143093697 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0068730.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143087345 143104348 - MGP_C3HHeJ_P0068730 Fhad1 protein_coding protein_coding MGP_C3HHeJ_T0068731.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143099630 143123145 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0068732.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143104041 143125290 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0068733.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143133734 143186833 - Fhad1 protein_coding retained_intron MGP_C3HHeJ_T0068734.1 MGP_C3HHeJ_G0028760.1 mouse_genomes_project 4 143185528 143186790 - Fhad1 protein_coding processed_transcript MGP_C3HHeJ_T0067046.1 MGP_C3HHeJ_G0028364.1 mouse_genomes_project 4 118938455 118942921 - MGP_C3HHeJ_P0067046 Cdc20 protein_coding protein_coding MGP_C3HHeJ_T0067047.1 MGP_C3HHeJ_G0028364.1 mouse_genomes_project 4 118938659 118942147 - MGP_C3HHeJ_P0067047 Cdc20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067048.1 MGP_C3HHeJ_G0028364.1 mouse_genomes_project 4 118939102 118941390 - Cdc20 protein_coding retained_intron MGP_C3HHeJ_T0014405.1 MGP_C3HHeJ_G0012509.1 mouse_genomes_project 4 57267344 57267761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017886.1 MGP_C3HHeJ_G0015344.1 mouse_genomes_project 4 154620773 154624325 - Gm16334 processed_transcript processed_transcript MGP_C3HHeJ_T0068047.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134390916 134432216 - MGP_C3HHeJ_P0068047 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068048.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134390925 134432368 - MGP_C3HHeJ_P0068048 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068049.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134390925 134419304 - MGP_C3HHeJ_P0068049 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068050.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134391447 134416886 - MGP_C3HHeJ_P0068050 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068051.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134391679 134417604 - MGP_C3HHeJ_P0068051 Rps6ka1 protein_coding protein_coding MGP_C3HHeJ_T0068052.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134395183 134405121 - Rps6ka1 protein_coding retained_intron MGP_C3HHeJ_T0068053.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134404358 134405233 - Rps6ka1 protein_coding retained_intron MGP_C3HHeJ_T0068054.1 MGP_C3HHeJ_G0028601.1 mouse_genomes_project 4 134416536 134432158 - Rps6ka1 protein_coding processed_transcript MGP_C3HHeJ_T0068365.1 MGP_C3HHeJ_G0028671.1 mouse_genomes_project 4 137689524 137692795 - MGP_C3HHeJ_P0068365 C1qc protein_coding protein_coding MGP_C3HHeJ_T0068366.1 MGP_C3HHeJ_G0028671.1 mouse_genomes_project 4 137691381 137692606 - C1qc protein_coding processed_transcript MGP_C3HHeJ_T0066889.1 MGP_C3HHeJ_G0028336.1 mouse_genomes_project 4 117438170 117449017 + MGP_C3HHeJ_P0066889 Hectd3 protein_coding protein_coding MGP_C3HHeJ_T0066890.1 MGP_C3HHeJ_G0028336.1 mouse_genomes_project 4 117441126 117444055 + Hectd3 protein_coding retained_intron MGP_C3HHeJ_T0066891.1 MGP_C3HHeJ_G0028336.1 mouse_genomes_project 4 117446596 117447194 + Hectd3 protein_coding retained_intron MGP_C3HHeJ_T0014477.1 MGP_C3HHeJ_G0012581.1 mouse_genomes_project 4 90161360 90162112 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014561.1 MGP_C3HHeJ_G0012665.1 mouse_genomes_project 4 118254224 118254539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007796.1 MGP_C3HHeJ_G0006369.1 mouse_genomes_project 4 82766026 82775144 + Gm11184 lincRNA lincRNA MGP_C3HHeJ_T0065645.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344126 62426858 - MGP_C3HHeJ_P0065645 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065646.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62425222 - Whrn protein_coding processed_transcript MGP_C3HHeJ_T0065647.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62362544 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0065648.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62362544 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0065649.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065649 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065650.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065650 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065651.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065651 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065652.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62344131 62427576 - MGP_C3HHeJ_P0065652 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065653.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62348690 62361151 - MGP_C3HHeJ_P0065653 Whrn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065654.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62354933 62361224 - Whrn protein_coding processed_transcript MGP_C3HHeJ_T0065655.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62360654 62427616 - MGP_C3HHeJ_P0065655 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065656.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62364022 62391721 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0065657.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62365450 62403091 - MGP_C3HHeJ_P0065657 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065658.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62390581 62426384 - MGP_C3HHeJ_P0065658 Whrn protein_coding protein_coding MGP_C3HHeJ_T0065659.1 MGP_C3HHeJ_G0028065.1 mouse_genomes_project 4 62391238 62426302 - Whrn protein_coding retained_intron MGP_C3HHeJ_T0014370.1 MGP_C3HHeJ_G0012474.1 mouse_genomes_project 4 45521528 45521663 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014414.1 MGP_C3HHeJ_G0012518.1 mouse_genomes_project 4 63827193 63828407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004419.1 MGP_C3HHeJ_G0003840.1 mouse_genomes_project 4 106658378 106660360 - Gm12744 antisense antisense MGP_C3HHeJ_T0068375.1 MGP_C3HHeJ_G0028677.1 mouse_genomes_project 4 138224465 138235896 - MGP_C3HHeJ_P0068375 protein_coding protein_coding MGP_C3HHeJ_T0066742.1 MGP_C3HHeJ_G0028309.1 mouse_genomes_project 4 116291768 116302282 - MGP_C3HHeJ_P0066742 Dmbx1 protein_coding protein_coding MGP_C3HHeJ_T0066743.1 MGP_C3HHeJ_G0028309.1 mouse_genomes_project 4 116291768 116316180 - MGP_C3HHeJ_P0066743 Dmbx1 protein_coding protein_coding MGP_C3HHeJ_T0066744.1 MGP_C3HHeJ_G0028309.1 mouse_genomes_project 4 116291769 116316180 - MGP_C3HHeJ_P0066744 Dmbx1 protein_coding protein_coding MGP_C3HHeJ_T0004367.1 MGP_C3HHeJ_G0003801.1 mouse_genomes_project 4 39708628 39857614 + antisense antisense MGP_C3HHeJ_T0068165.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107503 135119549 + MGP_C3HHeJ_P0068165 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068166.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107781 135117942 + MGP_C3HHeJ_P0068166 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068167.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107781 135118273 + MGP_C3HHeJ_P0068167 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068168.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107787 135118002 + MGP_C3HHeJ_P0068168 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068169.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107810 135121637 + MGP_C3HHeJ_P0068169 Paqr7 protein_coding protein_coding MGP_C3HHeJ_T0068170.1 MGP_C3HHeJ_G0028625.1 mouse_genomes_project 4 135107847 135117722 + Paqr7 protein_coding processed_transcript MGP_C3HHeJ_T0007744.1 MGP_C3HHeJ_G0006326.1 mouse_genomes_project 4 38391008 38432909 - 4933428C19Rik lincRNA lincRNA MGP_C3HHeJ_T0014284.1 MGP_C3HHeJ_G0012388.1 mouse_genomes_project 4 18718732 18719001 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066037.1 MGP_C3HHeJ_G0028160.1 mouse_genomes_project 4 96414398 96451311 - MGP_C3HHeJ_P0066037 Cyp2j5 protein_coding protein_coding MGP_C3HHeJ_T0068795.1 MGP_C3HHeJ_G0028798.1 mouse_genomes_project 4 146195408 146219671 - MGP_C3HHeJ_P0068795 Gm436 protein_coding protein_coding MGP_C3HHeJ_T0007865.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125931893 125943005 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007866.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125931893 125966305 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007867.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125932239 125966412 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007868.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125934457 125961129 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0007869.1 MGP_C3HHeJ_G0006423.1 mouse_genomes_project 4 125962548 125966412 - 2610028E06Rik lincRNA lincRNA MGP_C3HHeJ_T0068127.1 MGP_C3HHeJ_G0028614.1 mouse_genomes_project 4 134831880 134834188 - MGP_C3HHeJ_P0068127 Zfp593 protein_coding protein_coding MGP_C3HHeJ_T0068128.1 MGP_C3HHeJ_G0028614.1 mouse_genomes_project 4 134831898 134834138 - Zfp593 protein_coding processed_transcript MGP_C3HHeJ_T0066916.1 MGP_C3HHeJ_G0028341.1 mouse_genomes_project 4 117584511 117589737 - MGP_C3HHeJ_P0066916 Plk3 protein_coding protein_coding MGP_C3HHeJ_T0066917.1 MGP_C3HHeJ_G0028341.1 mouse_genomes_project 4 117584519 117589817 - Plk3 protein_coding processed_transcript MGP_C3HHeJ_T0066440.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139618 108157714 - MGP_C3HHeJ_P0066440 Podn protein_coding protein_coding MGP_C3HHeJ_T0066441.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139620 108149162 - MGP_C3HHeJ_P0066441 Podn protein_coding protein_coding MGP_C3HHeJ_T0066442.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139624 108154319 - MGP_C3HHeJ_P0066442 Podn protein_coding protein_coding MGP_C3HHeJ_T0066443.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139678 108157577 - MGP_C3HHeJ_P0066443 Podn protein_coding protein_coding MGP_C3HHeJ_T0066444.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108139681 108157578 - Podn protein_coding processed_transcript MGP_C3HHeJ_T0066445.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108142574 108146373 - MGP_C3HHeJ_P0066445 Podn protein_coding protein_coding MGP_C3HHeJ_T0066446.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108152640 108156610 - Podn protein_coding processed_transcript MGP_C3HHeJ_T0066447.1 MGP_C3HHeJ_G0028243.1 mouse_genomes_project 4 108152812 108157961 - Podn protein_coding processed_transcript MGP_C3HHeJ_T0068820.1 MGP_C3HHeJ_G0028808.1 mouse_genomes_project 4 149742353 149768341 - MGP_C3HHeJ_P0068820 Zfp933 protein_coding protein_coding MGP_C3HHeJ_T0068821.1 MGP_C3HHeJ_G0028808.1 mouse_genomes_project 4 149745930 149768341 - MGP_C3HHeJ_P0068821 Zfp933 protein_coding protein_coding MGP_C3HHeJ_T0065224.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44194654 44213933 + Ccdc180 protein_coding processed_transcript MGP_C3HHeJ_T0065225.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44194654 44257934 + MGP_C3HHeJ_P0065225 Ccdc180 protein_coding protein_coding MGP_C3HHeJ_T0065226.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44195202 44257927 + MGP_C3HHeJ_P0065226 Ccdc180 protein_coding protein_coding MGP_C3HHeJ_T0065227.1 MGP_C3HHeJ_G0027949.1 mouse_genomes_project 4 44220309 44228869 + MGP_C3HHeJ_P0065227 Ccdc180 protein_coding protein_coding MGP_C3HHeJ_T0014259.1 MGP_C3HHeJ_G0012363.1 mouse_genomes_project 4 12524548 12524872 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014331.1 MGP_C3HHeJ_G0012435.1 mouse_genomes_project 4 30678832 30679022 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014301.1 MGP_C3HHeJ_G0012405.1 mouse_genomes_project 4 22992507 22992892 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007922.1 MGP_C3HHeJ_G0006459.1 mouse_genomes_project 4 140965079 140966522 + Gm1667 lincRNA lincRNA MGP_C3HHeJ_T0067455.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126414828 126435355 - MGP_C3HHeJ_P0067455 Ago3 protein_coding protein_coding MGP_C3HHeJ_T0067456.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126416297 126515709 - MGP_C3HHeJ_P0067456 Ago3 protein_coding protein_coding MGP_C3HHeJ_T0067457.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126430027 126435937 - MGP_C3HHeJ_P0067457 Ago3 protein_coding protein_coding MGP_C3HHeJ_T0067458.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126459585 126487392 - Ago3 protein_coding processed_transcript MGP_C3HHeJ_T0067459.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126459825 126515439 - MGP_C3HHeJ_P0067459 Ago3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067460.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126481056 126487433 - Ago3 protein_coding processed_transcript MGP_C3HHeJ_T0067461.1 MGP_C3HHeJ_G0028476.1 mouse_genomes_project 4 126490793 126515694 - Ago3 protein_coding processed_transcript MGP_C3HHeJ_T0065968.1 MGP_C3HHeJ_G0028143.1 mouse_genomes_project 4 94308288 94308821 + MGP_C3HHeJ_P0065968 Gm10306 protein_coding protein_coding MGP_C3HHeJ_T0099355.1 MGP_C3HHeJ_G0037549.1 mouse_genomes_project 4 62566552 62566659 - Gm24234 snRNA snRNA MGP_C3HHeJ_T0064314.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7811515 7838157 - MGP_C3HHeJ_P0064314 Ndufaf6 protein_coding protein_coding MGP_C3HHeJ_T0064315.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7811520 7819113 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064316.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7811683 7838102 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064317.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7819102 7838102 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064318.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7822082 7838136 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064319.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7831350 7838158 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064320.1 MGP_C3HHeJ_G0027746.1 mouse_genomes_project 4 7834094 7838141 - Ndufaf6 protein_coding processed_transcript MGP_C3HHeJ_T0064615.1 MGP_C3HHeJ_G0027823.1 mouse_genomes_project 4 31568797 31594855 - MGP_C3HHeJ_P0064615 Spaca1 protein_coding protein_coding MGP_C3HHeJ_T0064616.1 MGP_C3HHeJ_G0027823.1 mouse_genomes_project 4 31568799 31584884 - MGP_C3HHeJ_P0064616 Spaca1 protein_coding protein_coding MGP_C3HHeJ_T0064617.1 MGP_C3HHeJ_G0027823.1 mouse_genomes_project 4 31572236 31595007 - MGP_C3HHeJ_P0064617 Spaca1 protein_coding protein_coding MGP_C3HHeJ_T0065333.1 MGP_C3HHeJ_G0027975.1 mouse_genomes_project 4 46942083 46964551 + MGP_C3HHeJ_P0065333 Msantd3 protein_coding protein_coding MGP_C3HHeJ_T0065334.1 MGP_C3HHeJ_G0027975.1 mouse_genomes_project 4 46942227 46964210 + MGP_C3HHeJ_P0065334 Msantd3 protein_coding protein_coding MGP_C3HHeJ_T0065335.1 MGP_C3HHeJ_G0027975.1 mouse_genomes_project 4 46962579 46964551 + Msantd3 protein_coding processed_transcript MGP_C3HHeJ_T0068597.1 MGP_C3HHeJ_G0028729.1 mouse_genomes_project 4 142020903 142066397 + MGP_C3HHeJ_P0068597 Padi2 protein_coding protein_coding MGP_C3HHeJ_T0068598.1 MGP_C3HHeJ_G0028729.1 mouse_genomes_project 4 142039369 142047984 + Padi2 protein_coding processed_transcript MGP_C3HHeJ_T0068599.1 MGP_C3HHeJ_G0028729.1 mouse_genomes_project 4 142059804 142063546 + Padi2 protein_coding processed_transcript MGP_C3HHeJ_T0007755.1 MGP_C3HHeJ_G0006336.1 mouse_genomes_project 4 45354243 45356726 - Gm568 lincRNA lincRNA MGP_C3HHeJ_T0069068.1 MGP_C3HHeJ_G0028858.1 mouse_genomes_project 4 152990362 153005340 + MGP_C3HHeJ_P0069068 Errfi1 protein_coding protein_coding MGP_C3HHeJ_T0069069.1 MGP_C3HHeJ_G0028858.1 mouse_genomes_project 4 152991504 152992247 + Errfi1 protein_coding processed_transcript MGP_C3HHeJ_T0069070.1 MGP_C3HHeJ_G0028858.1 mouse_genomes_project 4 152991504 153005335 + MGP_C3HHeJ_P0069070 Errfi1 protein_coding protein_coding MGP_C3HHeJ_T0004481.1 MGP_C3HHeJ_G0003888.1 mouse_genomes_project 4 136733999 136742420 + Gm13008 antisense antisense MGP_C3HHeJ_T0014509.1 MGP_C3HHeJ_G0012613.1 mouse_genomes_project 4 101259119 101259411 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014584.1 MGP_C3HHeJ_G0012688.1 mouse_genomes_project 4 123167398 123168258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007768.1 MGP_C3HHeJ_G0006345.1 mouse_genomes_project 4 54022646 54038932 - Gm12510 lincRNA lincRNA MGP_C3HHeJ_T0017839.1 MGP_C3HHeJ_G0015317.1 mouse_genomes_project 4 89096845 89138868 + Gm12610 processed_transcript processed_transcript MGP_C3HHeJ_T0011476.1 MGP_C3HHeJ_G0009609.1 mouse_genomes_project 4 85402004 85402281 + Gm26069 misc_RNA misc_RNA MGP_C3HHeJ_T0004484.1 MGP_C3HHeJ_G0003891.1 mouse_genomes_project 4 138580648 138590305 - Rap1gapos antisense antisense MGP_C3HHeJ_T0066173.1 MGP_C3HHeJ_G0028190.1 mouse_genomes_project 4 101768428 101777649 - MGP_C3HHeJ_P0066173 protein_coding protein_coding MGP_C3HHeJ_T0004534.1 MGP_C3HHeJ_G0003929.1 mouse_genomes_project 4 156850474 156857856 + Gm13133 antisense antisense MGP_C3HHeJ_T0069273.1 MGP_C3HHeJ_G0028892.1 mouse_genomes_project 4 156297479 156314113 - MGP_C3HHeJ_P0069273 Ccdc27 protein_coding protein_coding MGP_C3HHeJ_T0064441.1 MGP_C3HHeJ_G0027779.1 mouse_genomes_project 4 16535211 16589657 - MGP_C3HHeJ_P0064441 Cpne3 protein_coding protein_coding MGP_C3HHeJ_T0064442.1 MGP_C3HHeJ_G0027779.1 mouse_genomes_project 4 16557602 16560661 - Cpne3 protein_coding processed_transcript MGP_C3HHeJ_T0064443.1 MGP_C3HHeJ_G0027779.1 mouse_genomes_project 4 16568891 16589632 - Cpne3 protein_coding retained_intron MGP_C3HHeJ_T0004343.1 MGP_C3HHeJ_G0003782.1 mouse_genomes_project 4 3355904 3371946 + Gm11802 antisense antisense MGP_C3HHeJ_T0066663.1 MGP_C3HHeJ_G0028283.1 mouse_genomes_project 4 114196826 114199107 - protein_coding retained_intron MGP_C3HHeJ_T0014518.1 MGP_C3HHeJ_G0012622.1 mouse_genomes_project 4 105012981 105013249 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099394.1 MGP_C3HHeJ_G0037588.1 mouse_genomes_project 4 132696764 132696898 - Rnu11 snRNA snRNA MGP_C3HHeJ_T0100676.1 MGP_C3HHeJ_G0038870.1 mouse_genomes_project 4 132741317 132741453 + Snora16a snoRNA snoRNA MGP_C3HHeJ_T0066032.1 MGP_C3HHeJ_G0028156.1 mouse_genomes_project 4 96054818 96115574 - MGP_C3HHeJ_P0066032 Cyp2j11 protein_coding protein_coding MGP_C3HHeJ_T0007748.1 MGP_C3HHeJ_G0006330.1 mouse_genomes_project 4 41217311 41224306 + Gm26881 lincRNA lincRNA MGP_C3HHeJ_T0064375.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8858109 8910922 - MGP_C3HHeJ_P0064375 Tmem67 protein_coding protein_coding MGP_C3HHeJ_T0064376.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8858117 8910903 - MGP_C3HHeJ_P0064376 Tmem67 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064377.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8858399 8928473 - MGP_C3HHeJ_P0064377 Tmem67 protein_coding protein_coding MGP_C3HHeJ_T0064378.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8881682 8910972 - Tmem67 protein_coding retained_intron MGP_C3HHeJ_T0064379.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8890064 8910892 - Tmem67 protein_coding retained_intron MGP_C3HHeJ_T0064380.1 MGP_C3HHeJ_G0027759.1 mouse_genomes_project 4 8900640 8910897 - Tmem67 protein_coding retained_intron MGP_C3HHeJ_T0065169.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238891 43248231 + MGP_C3HHeJ_P0065169 Grhpr protein_coding protein_coding MGP_C3HHeJ_T0065170.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238899 43241440 + MGP_C3HHeJ_P0065170 Grhpr protein_coding protein_coding MGP_C3HHeJ_T0065171.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238928 43246507 + MGP_C3HHeJ_P0065171 Grhpr protein_coding protein_coding MGP_C3HHeJ_T0065172.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238929 43244824 + Grhpr protein_coding processed_transcript MGP_C3HHeJ_T0065173.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238957 43244745 + MGP_C3HHeJ_P0065173 Grhpr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065174.1 MGP_C3HHeJ_G0027936.1 mouse_genomes_project 4 43238996 43243887 + Grhpr protein_coding processed_transcript MGP_C3HHeJ_T0069377.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563026 157569633 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069378.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563085 157564163 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069379.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563101 157564021 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069380.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563121 157569677 + Faap20 protein_coding processed_transcript MGP_C3HHeJ_T0069381.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563188 157569901 + MGP_C3HHeJ_P0069381 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069382.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563188 157569897 + MGP_C3HHeJ_P0069382 Faap20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069383.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563211 157569597 + MGP_C3HHeJ_P0069383 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069384.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563225 157569898 + MGP_C3HHeJ_P0069384 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069385.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563542 157569632 + MGP_C3HHeJ_P0069385 Faap20 protein_coding protein_coding MGP_C3HHeJ_T0069386.1 MGP_C3HHeJ_G0028912.1 mouse_genomes_project 4 157563906 157569662 + Faap20 protein_coding retained_intron MGP_C3HHeJ_T0068735.1 MGP_C3HHeJ_G0028761.1 mouse_genomes_project 4 143203574 143270529 - MGP_C3HHeJ_P0068735 Tmem51 protein_coding protein_coding MGP_C3HHeJ_T0067955.1 MGP_C3HHeJ_G0028576.1 mouse_genomes_project 4 133255282 133271491 - MGP_C3HHeJ_P0067955 Themis2 protein_coding protein_coding MGP_C3HHeJ_T0066797.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701043 116860936 - MGP_C3HHeJ_P0066797 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066798.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701044 116861368 - MGP_C3HHeJ_P0066798 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066799.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701044 116861368 - MGP_C3HHeJ_P0066799 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066800.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116701096 116861149 - MGP_C3HHeJ_P0066800 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066801.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116702289 116703487 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066802.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116703861 116705083 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066803.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116703893 116704930 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066804.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116706572 116710358 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066805.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116707134 116712042 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066806.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116712001 116722764 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066807.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116714130 116725636 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066808.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116716715 116802923 - MGP_C3HHeJ_P0066808 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066809.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116722584 116802939 - MGP_C3HHeJ_P0066809 Mast2 protein_coding protein_coding MGP_C3HHeJ_T0066810.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116727882 116803744 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0066811.1 MGP_C3HHeJ_G0028320.1 mouse_genomes_project 4 116728171 116832754 - Mast2 protein_coding processed_transcript MGP_C3HHeJ_T0010565.1 MGP_C3HHeJ_G0008698.1 mouse_genomes_project 4 150090022 150090083 - Mir7022 miRNA miRNA MGP_C3HHeJ_T0067387.1 MGP_C3HHeJ_G0028461.1 mouse_genomes_project 4 125141151 125150568 - MGP_C3HHeJ_P0067387 Zc3h12a protein_coding protein_coding MGP_C3HHeJ_T0067388.1 MGP_C3HHeJ_G0028461.1 mouse_genomes_project 4 125142821 125145248 - Zc3h12a protein_coding retained_intron MGP_C3HHeJ_T0007724.1 MGP_C3HHeJ_G0006307.1 mouse_genomes_project 4 11092137 11110215 - 1700120G11Rik lincRNA lincRNA MGP_C3HHeJ_T0067263.1 MGP_C3HHeJ_G0028429.1 mouse_genomes_project 4 123008641 123030708 + MGP_C3HHeJ_P0067263 Bmp8b protein_coding protein_coding MGP_C3HHeJ_T0067266.1 MGP_C3HHeJ_G0028429.1 mouse_genomes_project 4 123019680 123036673 + Bmp8b protein_coding processed_transcript MGP_C3HHeJ_T0068561.1 MGP_C3HHeJ_G0028718.1 mouse_genomes_project 4 140641661 140669739 + MGP_C3HHeJ_P0068561 Aldh4a1 protein_coding protein_coding MGP_C3HHeJ_T0068562.1 MGP_C3HHeJ_G0028718.1 mouse_genomes_project 4 140641689 140669736 + Aldh4a1 protein_coding processed_transcript MGP_C3HHeJ_T0068563.1 MGP_C3HHeJ_G0028718.1 mouse_genomes_project 4 140641904 140655562 + Aldh4a1 protein_coding processed_transcript MGP_C3HHeJ_T0014603.1 MGP_C3HHeJ_G0012707.1 mouse_genomes_project 4 129616406 129616742 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067121.1 MGP_C3HHeJ_G0028392.1 mouse_genomes_project 4 119784923 119789324 + MGP_C3HHeJ_P0067121 Cldn19 protein_coding protein_coding MGP_C3HHeJ_T0067122.1 MGP_C3HHeJ_G0028392.1 mouse_genomes_project 4 119785018 119791918 + MGP_C3HHeJ_P0067122 Cldn19 protein_coding protein_coding MGP_C3HHeJ_T0065391.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51533658 51545934 + MGP_C3HHeJ_P0065391 Nipsnap3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065392.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51533670 51545941 + MGP_C3HHeJ_P0065392 Nipsnap3a protein_coding protein_coding MGP_C3HHeJ_T0065393.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51533804 51546250 + MGP_C3HHeJ_P0065393 Nipsnap3a protein_coding protein_coding MGP_C3HHeJ_T0065394.1 MGP_C3HHeJ_G0027997.1 mouse_genomes_project 4 51545335 51545933 + Nipsnap3a protein_coding retained_intron MGP_C3HHeJ_T0004448.1 MGP_C3HHeJ_G0003862.1 mouse_genomes_project 4 119660842 119665916 - Gm12868 antisense antisense MGP_C3HHeJ_T0014273.1 MGP_C3HHeJ_G0012377.1 mouse_genomes_project 4 15182125 15182347 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010555.1 MGP_C3HHeJ_G0008688.1 mouse_genomes_project 4 138406256 138406341 + Mir7018 miRNA miRNA MGP_C3HHeJ_T0064199.1 MGP_C3HHeJ_G0027723.1 mouse_genomes_project 4 319054 445824 + MGP_C3HHeJ_P0064199 Lyn protein_coding protein_coding MGP_C3HHeJ_T0064200.1 MGP_C3HHeJ_G0027723.1 mouse_genomes_project 4 319066 445823 + MGP_C3HHeJ_P0064200 Lyn protein_coding protein_coding MGP_C3HHeJ_T0064201.1 MGP_C3HHeJ_G0027723.1 mouse_genomes_project 4 393817 444154 + MGP_C3HHeJ_P0064201 Lyn protein_coding unknown_likely_coding MGP_C3HHeJ_T0014496.1 MGP_C3HHeJ_G0012600.1 mouse_genomes_project 4 98061876 98062422 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068658.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142517520 142531089 - MGP_C3HHeJ_P0068658 Clcnka protein_coding protein_coding MGP_C3HHeJ_T0068659.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142517520 142531609 - MGP_C3HHeJ_P0068659 Clcnka protein_coding protein_coding MGP_C3HHeJ_T0068660.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142524278 142527710 - Clcnka protein_coding retained_intron MGP_C3HHeJ_T0068661.1 MGP_C3HHeJ_G0028742.1 mouse_genomes_project 4 142528001 142531459 - MGP_C3HHeJ_P0068661 Clcnka protein_coding protein_coding MGP_C3HHeJ_T0067105.1 MGP_C3HHeJ_G0028390.1 mouse_genomes_project 4 119734470 119747903 - MGP_C3HHeJ_P0067105 4930538K18Rik protein_coding protein_coding MGP_C3HHeJ_T0014553.1 MGP_C3HHeJ_G0012657.1 mouse_genomes_project 4 117274485 117274825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100596.1 MGP_C3HHeJ_G0038790.1 mouse_genomes_project 4 240100 240227 + Gm22541 snoRNA snoRNA MGP_C3HHeJ_T0068179.1 MGP_C3HHeJ_G0028628.1 mouse_genomes_project 4 135150278 135164591 - MGP_C3HHeJ_P0068179 Sepn1 protein_coding protein_coding MGP_C3HHeJ_T0068180.1 MGP_C3HHeJ_G0028628.1 mouse_genomes_project 4 135151965 135153417 - Sepn1 protein_coding processed_transcript MGP_C3HHeJ_T0100672.1 MGP_C3HHeJ_G0038866.1 mouse_genomes_project 4 131104843 131104926 + Gm23711 snoRNA snoRNA MGP_C3HHeJ_T0064557.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29662901 30022629 + MGP_C3HHeJ_P0064557 Bach2 protein_coding protein_coding MGP_C3HHeJ_T0064558.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29663047 30017760 + MGP_C3HHeJ_P0064558 Bach2 protein_coding protein_coding MGP_C3HHeJ_T0064559.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29663174 29935612 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0064560.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29671873 29745095 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0064561.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29849003 30022633 + MGP_C3HHeJ_P0064561 Bach2 protein_coding protein_coding MGP_C3HHeJ_T0064562.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 29935480 29936602 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0064563.1 MGP_C3HHeJ_G0027808.1 mouse_genomes_project 4 30011472 30016399 + Bach2 protein_coding processed_transcript MGP_C3HHeJ_T0014424.1 MGP_C3HHeJ_G0012528.1 mouse_genomes_project 4 69110070 69111134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099381.1 MGP_C3HHeJ_G0037575.1 mouse_genomes_project 4 117655157 117655273 + Gm25099 snRNA snRNA MGP_C3HHeJ_T0100649.1 MGP_C3HHeJ_G0038843.1 mouse_genomes_project 4 90746608 90746740 - Gm25244 snoRNA snoRNA MGP_C3HHeJ_T0014461.1 MGP_C3HHeJ_G0012565.1 mouse_genomes_project 4 82997736 82998199 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010518.1 MGP_C3HHeJ_G0008651.1 mouse_genomes_project 4 88563202 88563308 - Mir31 miRNA miRNA MGP_C3HHeJ_T0007910.1 MGP_C3HHeJ_G0006450.1 mouse_genomes_project 4 135772043 135774270 - Gm16225 lincRNA lincRNA MGP_C3HHeJ_T0014532.1 MGP_C3HHeJ_G0012636.1 mouse_genomes_project 4 108603580 108604116 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010533.1 MGP_C3HHeJ_G0008666.1 mouse_genomes_project 4 121561763 121561827 - Mir7015 miRNA miRNA MGP_C3HHeJ_T0065415.1 MGP_C3HHeJ_G0028003.1 mouse_genomes_project 4 52339797 52349953 + MGP_C3HHeJ_P0065415 Tal2 protein_coding protein_coding MGP_C3HHeJ_T0017799.1 MGP_C3HHeJ_G0015293.1 mouse_genomes_project 4 808582 858516 + A830012C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064813.1 MGP_C3HHeJ_G0027870.1 mouse_genomes_project 4 39699002 39699750 - MGP_C3HHeJ_P0064813 protein_coding protein_coding MGP_C3HHeJ_T0064815.1 MGP_C3HHeJ_G0027870.1 mouse_genomes_project 4 39699006 39708023 - MGP_C3HHeJ_P0064815 protein_coding protein_coding MGP_C3HHeJ_T0064828.1 MGP_C3HHeJ_G0027870.1 mouse_genomes_project 4 39707611 39708580 - protein_coding processed_transcript MGP_C3HHeJ_T0068859.1 MGP_C3HHeJ_G0028818.1 mouse_genomes_project 4 150013751 150024793 - MGP_C3HHeJ_P0068859 Agtrap protein_coding protein_coding MGP_C3HHeJ_T0068860.1 MGP_C3HHeJ_G0028818.1 mouse_genomes_project 4 150017287 150021527 - Agtrap protein_coding processed_transcript MGP_C3HHeJ_T0068861.1 MGP_C3HHeJ_G0028818.1 mouse_genomes_project 4 150020660 150024793 - Agtrap protein_coding retained_intron MGP_C3HHeJ_T0014293.1 MGP_C3HHeJ_G0012397.1 mouse_genomes_project 4 20766535 20766952 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007942.1 MGP_C3HHeJ_G0006478.1 mouse_genomes_project 4 152179475 152184862 - Gm13093 lincRNA lincRNA MGP_C3HHeJ_T0004372.1 MGP_C3HHeJ_G0003805.1 mouse_genomes_project 4 41950255 41953634 + antisense antisense MGP_C3HHeJ_T0010526.1 MGP_C3HHeJ_G0008659.1 mouse_genomes_project 4 109199840 109199916 + Mir761 miRNA miRNA MGP_C3HHeJ_T0101990.1 MGP_C3HHeJ_G0039955.1 mouse_genomes_project 4 72976237 72976933 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066870.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233431 117250339 + MGP_C3HHeJ_P0066870 Mutyh protein_coding protein_coding MGP_C3HHeJ_T0066871.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233433 117246558 + MGP_C3HHeJ_P0066871 Mutyh protein_coding protein_coding MGP_C3HHeJ_T0066872.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233446 117250346 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0066873.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117233456 117249676 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0066874.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117245282 117250291 + MGP_C3HHeJ_P0066874 Mutyh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066875.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117245340 117247944 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0066876.1 MGP_C3HHeJ_G0028332.1 mouse_genomes_project 4 117248602 117250348 + Mutyh protein_coding retained_intron MGP_C3HHeJ_T0014425.1 MGP_C3HHeJ_G0012529.1 mouse_genomes_project 4 70182014 70182485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065892.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86546135 86816975 - MGP_C3HHeJ_P0065892 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065893.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86546140 86814479 - MGP_C3HHeJ_P0065893 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065894.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86554984 86814393 - MGP_C3HHeJ_P0065894 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065895.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86554984 86814389 - MGP_C3HHeJ_P0065895 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065896.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86559961 86575172 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0065897.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86592494 86758204 - MGP_C3HHeJ_P0065897 Slc24a2 protein_coding protein_coding MGP_C3HHeJ_T0065898.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86639736 86816921 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0065899.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86640124 86816920 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0065900.1 MGP_C3HHeJ_G0028113.1 mouse_genomes_project 4 86757703 86816965 - Slc24a2 protein_coding processed_transcript MGP_C3HHeJ_T0007750.1 MGP_C3HHeJ_G0006332.1 mouse_genomes_project 4 43197744 43204643 + Gm12678 lincRNA lincRNA MGP_C3HHeJ_T0068645.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142360857 142367771 + MGP_C3HHeJ_P0068645 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068646.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142361008 142368849 + Arhgef19 protein_coding retained_intron MGP_C3HHeJ_T0068647.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142364213 142367715 + MGP_C3HHeJ_P0068647 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068648.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142364227 142379449 + MGP_C3HHeJ_P0068648 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068649.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142364251 142368360 + MGP_C3HHeJ_P0068649 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068650.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142366783 142368803 + MGP_C3HHeJ_P0068650 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068651.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142367754 142369468 + MGP_C3HHeJ_P0068651 Arhgef19 protein_coding protein_coding MGP_C3HHeJ_T0068652.1 MGP_C3HHeJ_G0028739.1 mouse_genomes_project 4 142368284 142369335 + Arhgef19 protein_coding retained_intron MGP_C3HHeJ_T0068089.1 MGP_C3HHeJ_G0028607.1 mouse_genomes_project 4 134651542 134665599 - Cd52 protein_coding processed_transcript MGP_C3HHeJ_T0068092.1 MGP_C3HHeJ_G0028607.1 mouse_genomes_project 4 134664093 134665640 - MGP_C3HHeJ_P0068092 Cd52 protein_coding protein_coding MGP_C3HHeJ_T0068093.1 MGP_C3HHeJ_G0028607.1 mouse_genomes_project 4 134664633 134665596 - Cd52 protein_coding processed_transcript MGP_C3HHeJ_T0004530.1 MGP_C3HHeJ_G0003925.1 mouse_genomes_project 4 153532151 153535262 + 4930589P08Rik antisense antisense MGP_C3HHeJ_T0065527.1 MGP_C3HHeJ_G0028032.1 mouse_genomes_project 4 57680163 57716549 + MGP_C3HHeJ_P0065527 Gm20503 protein_coding protein_coding MGP_C3HHeJ_T0100638.1 MGP_C3HHeJ_G0038832.1 mouse_genomes_project 4 65586975 65587108 + Gm25480 snoRNA snoRNA MGP_C3HHeJ_T0064381.1 MGP_C3HHeJ_G0027760.1 mouse_genomes_project 4 8912396 9007219 + MGP_C3HHeJ_P0064381 Rbm12b1 protein_coding protein_coding MGP_C3HHeJ_T0064382.1 MGP_C3HHeJ_G0027760.1 mouse_genomes_project 4 8912398 9013843 + MGP_C3HHeJ_P0064382 Rbm12b1 protein_coding protein_coding MGP_C3HHeJ_T0068668.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581217 142605301 + MGP_C3HHeJ_P0068668 Zbtb17 protein_coding protein_coding MGP_C3HHeJ_T0068669.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581247 142606006 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068670.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581262 142605301 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068671.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142581269 142597405 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068672.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142601458 142603123 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068673.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142602893 142604144 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0068674.1 MGP_C3HHeJ_G0028746.1 mouse_genomes_project 4 142603490 142605145 + Zbtb17 protein_coding processed_transcript MGP_C3HHeJ_T0064911.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186639 41194473 - MGP_C3HHeJ_P0064911 Pigo protein_coding unknown_likely_coding MGP_C3HHeJ_T0064912.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186641 41194082 - MGP_C3HHeJ_P0064912 Pigo protein_coding protein_coding MGP_C3HHeJ_T0064913.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186641 41194821 - MGP_C3HHeJ_P0064913 Pigo protein_coding protein_coding MGP_C3HHeJ_T0064914.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186641 41194758 - MGP_C3HHeJ_P0064914 Pigo protein_coding protein_coding MGP_C3HHeJ_T0064915.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41186913 41188713 - Pigo protein_coding processed_transcript MGP_C3HHeJ_T0064916.1 MGP_C3HHeJ_G0027896.1 mouse_genomes_project 4 41193704 41194469 - Pigo protein_coding processed_transcript MGP_C3HHeJ_T0001394.1 MGP_C3HHeJ_G0001324.1 mouse_genomes_project 4 146479331 146481025 - TEC TEC MGP_C3HHeJ_T0064872.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41032380 41038580 - MGP_C3HHeJ_P0064872 Fam205c protein_coding protein_coding MGP_C3HHeJ_T0064873.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41032579 41038572 - MGP_C3HHeJ_P0064873 Fam205c protein_coding protein_coding MGP_C3HHeJ_T0064874.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41035876 41038098 - Fam205c protein_coding processed_transcript MGP_C3HHeJ_T0064875.1 MGP_C3HHeJ_G0027890.1 mouse_genomes_project 4 41036064 41038611 - Fam205c protein_coding processed_transcript MGP_C3HHeJ_T0067073.1 MGP_C3HHeJ_G0028375.1 mouse_genomes_project 4 119242394 119243342 + MGP_C3HHeJ_P0067073 Olfr1339 protein_coding protein_coding MGP_C3HHeJ_T0014466.1 MGP_C3HHeJ_G0012570.1 mouse_genomes_project 4 84696748 84697060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004350.1 MGP_C3HHeJ_G0003788.1 mouse_genomes_project 4 11822141 11845391 + Gm11837 antisense antisense MGP_C3HHeJ_T0004351.1 MGP_C3HHeJ_G0003788.1 mouse_genomes_project 4 11822894 11845528 + Gm11837 antisense antisense MGP_C3HHeJ_T0004352.1 MGP_C3HHeJ_G0003788.1 mouse_genomes_project 4 11822909 11845403 + Gm11837 antisense antisense MGP_C3HHeJ_T0068367.1 MGP_C3HHeJ_G0028672.1 mouse_genomes_project 4 137695675 137698562 - MGP_C3HHeJ_P0068367 C1qa protein_coding protein_coding MGP_C3HHeJ_T0007799.1 MGP_C3HHeJ_G0006372.1 mouse_genomes_project 4 83540426 83544366 - Gm12414 lincRNA lincRNA MGP_C3HHeJ_T0098292.1 MGP_C3HHeJ_G0036504.1 mouse_genomes_project 4 133317275 133317440 - Gm22767 scaRNA scaRNA MGP_C3HHeJ_T0064682.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38045941 38103777 + MGP_C3HHeJ_P0064682 Aco1 protein_coding protein_coding MGP_C3HHeJ_T0064683.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38066553 38072187 + Aco1 protein_coding processed_transcript MGP_C3HHeJ_T0064684.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38069703 38078702 + Aco1 protein_coding processed_transcript MGP_C3HHeJ_T0064685.1 MGP_C3HHeJ_G0027838.1 mouse_genomes_project 4 38093365 38101843 + Aco1 protein_coding processed_transcript MGP_C3HHeJ_T0014506.1 MGP_C3HHeJ_G0012610.1 mouse_genomes_project 4 100486643 100487580 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068906.1 MGP_C3HHeJ_G0028829.1 mouse_genomes_project 4 150562518 150565641 + MGP_C3HHeJ_P0068906 Srm protein_coding protein_coding MGP_C3HHeJ_T0068907.1 MGP_C3HHeJ_G0028829.1 mouse_genomes_project 4 150562932 150565221 + Srm protein_coding retained_intron MGP_C3HHeJ_T0068908.1 MGP_C3HHeJ_G0028829.1 mouse_genomes_project 4 150564915 150566015 + Srm protein_coding processed_transcript MGP_C3HHeJ_T0066025.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95798673 95826466 - MGP_C3HHeJ_P0066025 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066026.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95813802 95844373 - MGP_C3HHeJ_P0066026 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066027.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95816373 95844379 - MGP_C3HHeJ_P0066027 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066028.1 MGP_C3HHeJ_G0028153.1 mouse_genomes_project 4 95816373 95844357 - MGP_C3HHeJ_P0066028 Cyp2j13 protein_coding protein_coding MGP_C3HHeJ_T0066031.1 MGP_C3HHeJ_G0028155.1 mouse_genomes_project 4 95956913 95990209 - MGP_C3HHeJ_P0066031 Cyp2j7 protein_coding protein_coding MGP_C3HHeJ_T0065586.1 MGP_C3HHeJ_G0028051.1 mouse_genomes_project 4 61332973 61340755 - MGP_C3HHeJ_P0065586 Rnf183 protein_coding protein_coding MGP_C3HHeJ_T0065587.1 MGP_C3HHeJ_G0028051.1 mouse_genomes_project 4 61332975 61340229 - MGP_C3HHeJ_P0065587 Rnf183 protein_coding protein_coding MGP_C3HHeJ_T0065588.1 MGP_C3HHeJ_G0028051.1 mouse_genomes_project 4 61333420 61333993 - MGP_C3HHeJ_P0065588 Rnf183 protein_coding protein_coding MGP_C3HHeJ_T0066401.1 MGP_C3HHeJ_G0028237.1 mouse_genomes_project 4 107785794 107792971 - MGP_C3HHeJ_P0066401 Dmrtb1 protein_coding protein_coding MGP_C3HHeJ_T0066402.1 MGP_C3HHeJ_G0028237.1 mouse_genomes_project 4 107785796 107793621 - MGP_C3HHeJ_P0066402 Dmrtb1 protein_coding protein_coding MGP_C3HHeJ_T0066403.1 MGP_C3HHeJ_G0028237.1 mouse_genomes_project 4 107786408 107790344 - Dmrtb1 protein_coding retained_intron MGP_C3HHeJ_T0014351.1 MGP_C3HHeJ_G0012455.1 mouse_genomes_project 4 37753732 37754420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014374.1 MGP_C3HHeJ_G0012478.1 mouse_genomes_project 4 47406330 47406668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067719.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129879534 129894618 - MGP_C3HHeJ_P0067719 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067720.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129879539 129894195 - Txlna protein_coding retained_intron MGP_C3HHeJ_T0067721.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129879539 129894358 - MGP_C3HHeJ_P0067721 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067722.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129885622 129894618 - MGP_C3HHeJ_P0067722 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067723.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129887837 129894531 - MGP_C3HHeJ_P0067723 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067724.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129887853 129894512 - MGP_C3HHeJ_P0067724 Txlna protein_coding protein_coding MGP_C3HHeJ_T0067725.1 MGP_C3HHeJ_G0028531.1 mouse_genomes_project 4 129893016 129894513 - MGP_C3HHeJ_P0067725 Txlna protein_coding protein_coding MGP_C3HHeJ_T0068033.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134143949 134173490 - MGP_C3HHeJ_P0068033 Zdhhc18 protein_coding protein_coding MGP_C3HHeJ_T0068034.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134147315 134154224 - Zdhhc18 protein_coding retained_intron MGP_C3HHeJ_T0068035.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134147385 134151690 - Zdhhc18 protein_coding processed_transcript MGP_C3HHeJ_T0068036.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134151971 134153999 - Zdhhc18 protein_coding retained_intron MGP_C3HHeJ_T0068037.1 MGP_C3HHeJ_G0028598.1 mouse_genomes_project 4 134167512 134192459 - Zdhhc18 protein_coding processed_transcript MGP_C3HHeJ_T0101986.1 MGP_C3HHeJ_G0039951.1 mouse_genomes_project 4 51477976 51478927 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0067805.1 MGP_C3HHeJ_G0028548.1 mouse_genomes_project 4 130849769 130893701 - MGP_C3HHeJ_P0067805 Nkain1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067806.1 MGP_C3HHeJ_G0028548.1 mouse_genomes_project 4 130849785 130893908 - MGP_C3HHeJ_P0067806 Nkain1 protein_coding protein_coding MGP_C3HHeJ_T0067807.1 MGP_C3HHeJ_G0028548.1 mouse_genomes_project 4 130858267 130877169 - Nkain1 protein_coding processed_transcript MGP_C3HHeJ_T0065197.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43591679 43595692 - MGP_C3HHeJ_P0065197 Exosc3 protein_coding protein_coding MGP_C3HHeJ_T0065198.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43591860 43595399 - Exosc3 protein_coding processed_transcript MGP_C3HHeJ_T0065199.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43592020 43618151 - MGP_C3HHeJ_P0065199 Exosc3 protein_coding protein_coding MGP_C3HHeJ_T0065200.1 MGP_C3HHeJ_G0027942.1 mouse_genomes_project 4 43592531 43595667 - Exosc3 protein_coding processed_transcript MGP_C3HHeJ_T0017876.1 MGP_C3HHeJ_G0015339.1 mouse_genomes_project 4 132292919 132314069 - Gm12992 processed_transcript processed_transcript MGP_C3HHeJ_T0017877.1 MGP_C3HHeJ_G0015339.1 mouse_genomes_project 4 132306455 132309557 - Gm12992 processed_transcript processed_transcript MGP_C3HHeJ_T0066500.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108779572 108793758 + MGP_C3HHeJ_P0066500 Cc2d1b protein_coding protein_coding MGP_C3HHeJ_T0066501.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108783144 108785639 + MGP_C3HHeJ_P0066501 Cc2d1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066502.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108783195 108793758 + MGP_C3HHeJ_P0066502 Cc2d1b protein_coding protein_coding MGP_C3HHeJ_T0066503.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108785387 108786395 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066504.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108785652 108786736 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066505.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108785680 108793740 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066506.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108789222 108790035 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0066507.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108789256 108790066 + Cc2d1b protein_coding processed_transcript MGP_C3HHeJ_T0066508.1 MGP_C3HHeJ_G0028254.1 mouse_genomes_project 4 108790082 108792898 + Cc2d1b protein_coding retained_intron MGP_C3HHeJ_T0007896.1 MGP_C3HHeJ_G0006442.1 mouse_genomes_project 4 132075351 132092176 - Gm16080 lincRNA lincRNA MGP_C3HHeJ_T0102024.1 MGP_C3HHeJ_G0039989.1 mouse_genomes_project 4 145309689 145312250 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014600.1 MGP_C3HHeJ_G0012704.1 mouse_genomes_project 4 127433165 127433847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068831.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149799902 149831839 - MGP_C3HHeJ_P0068831 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068832.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149799902 149831856 - MGP_C3HHeJ_P0068832 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068833.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149800319 149831850 - MGP_C3HHeJ_P0068833 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068834.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149807822 149831850 - MGP_C3HHeJ_P0068834 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068835.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149812035 149813901 - Mfn2 protein_coding processed_transcript MGP_C3HHeJ_T0068836.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149813711 149830549 - MGP_C3HHeJ_P0068836 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0068837.1 MGP_C3HHeJ_G0028811.1 mouse_genomes_project 4 149820683 149831810 - MGP_C3HHeJ_P0068837 Mfn2 protein_coding protein_coding MGP_C3HHeJ_T0014449.1 MGP_C3HHeJ_G0012553.1 mouse_genomes_project 4 76108839 76109184 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099330.1 MGP_C3HHeJ_G0037524.1 mouse_genomes_project 4 22706136 22706299 - Gm24977 snRNA snRNA MGP_C3HHeJ_T0000001.1 MGP_C3HHeJ_G0000001.1 mouse_genomes_project 4 118334321 118367623 - Gm17114 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C3HHeJ_T0004400.1 MGP_C3HHeJ_G0003830.1 mouse_genomes_project 4 94712899 94772855 + Gm12694 antisense antisense MGP_C3HHeJ_T0014361.1 MGP_C3HHeJ_G0012465.1 mouse_genomes_project 4 42550681 42551313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067088.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119698522 119702989 - MGP_C3HHeJ_P0067088 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0067089.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119698522 119703328 - MGP_C3HHeJ_P0067089 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0067090.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119698525 119702989 - MGP_C3HHeJ_P0067090 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0067091.1 MGP_C3HHeJ_G0028386.1 mouse_genomes_project 4 119700006 119702989 - MGP_C3HHeJ_P0067091 Zfp691 protein_coding protein_coding MGP_C3HHeJ_T0069150.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154300506 154304692 + MGP_C3HHeJ_P0069150 Tnfrsf25 protein_coding protein_coding MGP_C3HHeJ_T0069151.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154300915 154304684 + MGP_C3HHeJ_P0069151 Tnfrsf25 protein_coding protein_coding MGP_C3HHeJ_T0069152.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154300971 154301559 + Tnfrsf25 protein_coding processed_transcript MGP_C3HHeJ_T0069153.1 MGP_C3HHeJ_G0028874.1 mouse_genomes_project 4 154302543 154303896 + Tnfrsf25 protein_coding processed_transcript MGP_C3HHeJ_T0007751.1 MGP_C3HHeJ_G0006333.1 mouse_genomes_project 4 43938855 43941225 + lincRNA lincRNA MGP_C3HHeJ_T0068633.1 MGP_C3HHeJ_G0028735.1 mouse_genomes_project 4 142206371 142230556 + MGP_C3HHeJ_P0068633 Spata21 protein_coding protein_coding MGP_C3HHeJ_T0068634.1 MGP_C3HHeJ_G0028735.1 mouse_genomes_project 4 142221787 142229342 + Spata21 protein_coding retained_intron MGP_C3HHeJ_T0098134.1 MGP_C3HHeJ_G0036346.1 mouse_genomes_project 4 81783237 81783342 + n-R5s188 rRNA rRNA MGP_C3HHeJ_T0064664.1 MGP_C3HHeJ_G0027834.1 mouse_genomes_project 4 32737178 32739050 + MGP_C3HHeJ_P0064664 Ifnk protein_coding protein_coding MGP_C3HHeJ_T0065693.1 MGP_C3HHeJ_G0028078.1 mouse_genomes_project 4 69503412 69614602 - MGP_C3HHeJ_P0065693 Megf9 protein_coding protein_coding MGP_C3HHeJ_T0065694.1 MGP_C3HHeJ_G0028078.1 mouse_genomes_project 4 69538537 69614669 - MGP_C3HHeJ_P0065694 Megf9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066709.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111677 116148203 + MGP_C3HHeJ_P0066709 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066710.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111712 116132226 + Efcab14 protein_coding processed_transcript MGP_C3HHeJ_T0066711.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111712 116143252 + MGP_C3HHeJ_P0066711 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066712.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116111713 116127864 + Efcab14 protein_coding processed_transcript MGP_C3HHeJ_T0066713.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116112006 116151105 + MGP_C3HHeJ_P0066713 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066714.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116112376 116147846 + MGP_C3HHeJ_P0066714 Efcab14 protein_coding protein_coding MGP_C3HHeJ_T0066715.1 MGP_C3HHeJ_G0028302.1 mouse_genomes_project 4 116141005 116148956 + Efcab14 protein_coding processed_transcript MGP_C3HHeJ_T0014368.1 MGP_C3HHeJ_G0012472.1 mouse_genomes_project 4 44755397 44755720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010528.1 MGP_C3HHeJ_G0008661.1 mouse_genomes_project 4 118710088 118710148 - Mir7226 miRNA miRNA MGP_C3HHeJ_T0069296.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567137 156589833 - Arhgef16 protein_coding retained_intron MGP_C3HHeJ_T0069297.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567137 156571147 - Arhgef16 protein_coding retained_intron MGP_C3HHeJ_T0069298.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567137 156589995 - MGP_C3HHeJ_P0069298 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0069299.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156567401 156591602 - MGP_C3HHeJ_P0069299 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0069300.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156570665 156577016 - Arhgef16 protein_coding processed_transcript MGP_C3HHeJ_T0069301.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156576967 156589833 - MGP_C3HHeJ_P0069301 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0069302.1 MGP_C3HHeJ_G0028897.1 mouse_genomes_project 4 156580984 156591615 - MGP_C3HHeJ_P0069302 Arhgef16 protein_coding protein_coding MGP_C3HHeJ_T0099389.1 MGP_C3HHeJ_G0037583.1 mouse_genomes_project 4 126265455 126265552 - Gm25323 snRNA snRNA MGP_C3HHeJ_T0100602.1 MGP_C3HHeJ_G0038796.1 mouse_genomes_project 4 3301029 3301161 - Gm22473 snoRNA snoRNA MGP_C3HHeJ_T0065398.1 MGP_C3HHeJ_G0027999.1 mouse_genomes_project 4 51575612 51702976 - MGP_C3HHeJ_P0065398 Abca1 protein_coding protein_coding MGP_C3HHeJ_T0065399.1 MGP_C3HHeJ_G0027999.1 mouse_genomes_project 4 51580313 51585738 - Abca1 protein_coding processed_transcript MGP_C3HHeJ_T0067071.1 MGP_C3HHeJ_G0028373.1 mouse_genomes_project 4 119218666 119219605 + MGP_C3HHeJ_P0067071 Olfr1341 protein_coding protein_coding MGP_C3HHeJ_T0068564.1 MGP_C3HHeJ_G0028719.1 mouse_genomes_project 4 140674643 140692048 + MGP_C3HHeJ_P0068564 Tas1r2 protein_coding protein_coding MGP_C3HHeJ_T0068565.1 MGP_C3HHeJ_G0028719.1 mouse_genomes_project 4 140674654 140691628 + MGP_C3HHeJ_P0068565 Tas1r2 protein_coding protein_coding MGP_C3HHeJ_T0067183.1 MGP_C3HHeJ_G0028404.1 mouse_genomes_project 4 120717365 120723528 + MGP_C3HHeJ_P0067183 Edn2 protein_coding protein_coding MGP_C3HHeJ_T0068268.1 MGP_C3HHeJ_G0028649.1 mouse_genomes_project 4 136618731 136645322 + MGP_C3HHeJ_P0068268 Cnr2 protein_coding protein_coding MGP_C3HHeJ_T0068269.1 MGP_C3HHeJ_G0028649.1 mouse_genomes_project 4 136635972 136645322 + MGP_C3HHeJ_P0068269 Cnr2 protein_coding protein_coding MGP_C3HHeJ_T0064364.1 MGP_C3HHeJ_G0027755.1 mouse_genomes_project 4 8519141 8529433 + MGP_C3HHeJ_P0064364 Gem protein_coding protein_coding MGP_C3HHeJ_T0064365.1 MGP_C3HHeJ_G0027755.1 mouse_genomes_project 4 8520491 8529433 + MGP_C3HHeJ_P0064365 Gem protein_coding protein_coding MGP_C3HHeJ_T0007732.1 MGP_C3HHeJ_G0006314.1 mouse_genomes_project 4 21048622 21049089 - Gm28448 lincRNA lincRNA MGP_C3HHeJ_T0068469.1 MGP_C3HHeJ_G0028694.1 mouse_genomes_project 4 139357433 139365881 + MGP_C3HHeJ_P0068469 Mul1 protein_coding protein_coding MGP_C3HHeJ_T0068470.1 MGP_C3HHeJ_G0028694.1 mouse_genomes_project 4 139357439 139365887 + MGP_C3HHeJ_P0068470 Mul1 protein_coding protein_coding MGP_C3HHeJ_T0068471.1 MGP_C3HHeJ_G0028694.1 mouse_genomes_project 4 139357485 139362975 + MGP_C3HHeJ_P0068471 Mul1 protein_coding protein_coding MGP_C3HHeJ_T0067389.1 MGP_C3HHeJ_G0028462.1 mouse_genomes_project 4 125523413 125747162 + MGP_C3HHeJ_P0067389 Grik3 protein_coding protein_coding MGP_C3HHeJ_T0068146.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134903638 134918734 + MGP_C3HHeJ_P0068146 Trim63 protein_coding protein_coding MGP_C3HHeJ_T0068147.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134903640 134918712 + MGP_C3HHeJ_P0068147 Trim63 protein_coding protein_coding MGP_C3HHeJ_T0068148.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134903730 134905896 + Trim63 protein_coding retained_intron MGP_C3HHeJ_T0068149.1 MGP_C3HHeJ_G0028619.1 mouse_genomes_project 4 134908506 134918731 + Trim63 protein_coding processed_transcript MGP_C3HHeJ_T0068793.1 MGP_C3HHeJ_G0028796.1 mouse_genomes_project 4 146080854 146090917 - MGP_C3HHeJ_P0068793 Gm13124 protein_coding protein_coding MGP_C3HHeJ_T0011463.1 MGP_C3HHeJ_G0009596.1 mouse_genomes_project 4 29948991 29949258 + Gm24371 misc_RNA misc_RNA MGP_C3HHeJ_T0010549.1 MGP_C3HHeJ_G0008682.1 mouse_genomes_project 4 135076084 135076175 + Gm23634 miRNA miRNA MGP_C3HHeJ_T0007719.1 MGP_C3HHeJ_G0006302.1 mouse_genomes_project 4 8799229 8806958 + Gm26895 lincRNA lincRNA MGP_C3HHeJ_T0100599.1 MGP_C3HHeJ_G0038793.1 mouse_genomes_project 4 518506 518643 - Gm24125 snoRNA snoRNA MGP_C3HHeJ_T0100668.1 MGP_C3HHeJ_G0038862.1 mouse_genomes_project 4 126930895 126931025 - Gm24161 snoRNA snoRNA MGP_C3HHeJ_T0066603.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622148 111165027 + MGP_C3HHeJ_P0066603 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066604.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622185 111869875 + MGP_C3HHeJ_P0066604 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066605.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622185 110871255 + MGP_C3HHeJ_P0066605 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066606.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622185 111769634 + MGP_C3HHeJ_P0066606 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066607.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622278 111863180 + MGP_C3HHeJ_P0066607 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066608.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 110622278 111863180 + MGP_C3HHeJ_P0066608 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066609.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111326150 111466422 + Agbl4 protein_coding processed_transcript MGP_C3HHeJ_T0066610.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111326220 111826112 + MGP_C3HHeJ_P0066610 Agbl4 protein_coding protein_coding MGP_C3HHeJ_T0066617.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111769318 111862239 + Agbl4 protein_coding processed_transcript MGP_C3HHeJ_T0066618.1 MGP_C3HHeJ_G0028273.1 mouse_genomes_project 4 111769348 111863177 + Agbl4 protein_coding processed_transcript MGP_C3HHeJ_T0014234.1 MGP_C3HHeJ_G0012338.1 mouse_genomes_project 4 4848151 4848611 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007822.1 MGP_C3HHeJ_G0006392.1 mouse_genomes_project 4 101266258 101275887 - E130102H24Rik lincRNA lincRNA MGP_C3HHeJ_T0007824.1 MGP_C3HHeJ_G0006392.1 mouse_genomes_project 4 101275680 101276374 - E130102H24Rik lincRNA lincRNA MGP_C3HHeJ_T0014385.1 MGP_C3HHeJ_G0012489.1 mouse_genomes_project 4 51361719 51362360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068769.1 MGP_C3HHeJ_G0028779.1 mouse_genomes_project 4 145137049 145140773 - protein_coding retained_intron MGP_C3HHeJ_T0065722.1 MGP_C3HHeJ_G0028086.1 mouse_genomes_project 4 74416493 74417445 - MGP_C3HHeJ_P0065722 Tmem261 protein_coding protein_coding MGP_C3HHeJ_T0064454.1 MGP_C3HHeJ_G0027786.1 mouse_genomes_project 4 17070622 17095452 + MGP_C3HHeJ_P0064454 Ggh protein_coding protein_coding MGP_C3HHeJ_T0014502.1 MGP_C3HHeJ_G0012606.1 mouse_genomes_project 4 99334183 99334580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004348.1 MGP_C3HHeJ_G0003786.1 mouse_genomes_project 4 8414674 8418543 - Gm11832 antisense antisense MGP_C3HHeJ_T0065634.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62129060 62209813 + Col27a1 protein_coding retained_intron MGP_C3HHeJ_T0065635.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62130468 62191381 + Col27a1 protein_coding retained_intron MGP_C3HHeJ_T0065636.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62130491 62255263 + MGP_C3HHeJ_P0065636 Col27a1 protein_coding protein_coding MGP_C3HHeJ_T0065637.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62130882 62255262 + MGP_C3HHeJ_P0065637 Col27a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065638.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62149314 62253985 + MGP_C3HHeJ_P0065638 Col27a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065639.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62199012 62253992 + MGP_C3HHeJ_P0065639 Col27a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065640.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62199858 62254021 + Col27a1 protein_coding retained_intron MGP_C3HHeJ_T0065641.1 MGP_C3HHeJ_G0028062.1 mouse_genomes_project 4 62251264 62254410 + Col27a1 protein_coding processed_transcript MGP_C3HHeJ_T0007774.1 MGP_C3HHeJ_G0006351.1 mouse_genomes_project 4 56015203 56018618 - 1700042G15Rik lincRNA lincRNA MGP_C3HHeJ_T0007775.1 MGP_C3HHeJ_G0006351.1 mouse_genomes_project 4 56015527 56018637 - 1700042G15Rik lincRNA lincRNA MGP_C3HHeJ_T0007776.1 MGP_C3HHeJ_G0006351.1 mouse_genomes_project 4 56015629 56018597 - 1700042G15Rik lincRNA lincRNA MGP_C3HHeJ_T0065947.1 MGP_C3HHeJ_G0028137.1 mouse_genomes_project 4 89911005 89917869 + MGP_C3HHeJ_P0065947 Zfp352 protein_coding protein_coding MGP_C3HHeJ_T0065948.1 MGP_C3HHeJ_G0028137.1 mouse_genomes_project 4 89915780 89917436 + MGP_C3HHeJ_P0065948 Zfp352 protein_coding protein_coding MGP_C3HHeJ_T0014292.1 MGP_C3HHeJ_G0012396.1 mouse_genomes_project 4 20630706 20631621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065351.1 MGP_C3HHeJ_G0027982.1 mouse_genomes_project 4 47984303 47992801 - MGP_C3HHeJ_P0065351 Mrpl50 protein_coding protein_coding MGP_C3HHeJ_T0064928.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217103 - MGP_C3HHeJ_P0064928 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064929.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217498 - MGP_C3HHeJ_P0064929 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064930.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41211581 - MGP_C3HHeJ_P0064930 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064931.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217075 - MGP_C3HHeJ_P0064931 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064932.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41211584 - MGP_C3HHeJ_P0064932 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064933.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41201407 41217498 - MGP_C3HHeJ_P0064933 Fam214b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064934.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206000 41211588 - MGP_C3HHeJ_P0064934 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064935.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206281 41208614 - MGP_C3HHeJ_P0064935 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064936.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206384 41210624 - MGP_C3HHeJ_P0064936 Fam214b protein_coding protein_coding MGP_C3HHeJ_T0064937.1 MGP_C3HHeJ_G0027898.1 mouse_genomes_project 4 41206658 41217037 - Fam214b protein_coding processed_transcript MGP_C3HHeJ_T0004401.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94795853 94812658 + Junos antisense antisense MGP_C3HHeJ_T0004402.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94797292 94804959 + Junos antisense antisense MGP_C3HHeJ_T0004403.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94797581 94912501 + Junos antisense antisense MGP_C3HHeJ_T0004404.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94820807 94909690 + Junos antisense antisense MGP_C3HHeJ_T0004405.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94820954 94886610 + Junos antisense antisense MGP_C3HHeJ_T0004406.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94841109 94914830 + Junos antisense antisense MGP_C3HHeJ_T0004407.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94846281 94919497 + Junos antisense antisense MGP_C3HHeJ_T0004408.1 MGP_C3HHeJ_G0003831.1 mouse_genomes_project 4 94872852 94920894 + Junos antisense antisense MGP_C3HHeJ_T0014337.1 MGP_C3HHeJ_G0012441.1 mouse_genomes_project 4 32485359 32487410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010520.1 MGP_C3HHeJ_G0008653.1 mouse_genomes_project 4 94418477 94418558 + Mir872 miRNA miRNA MGP_C3HHeJ_T0068794.1 MGP_C3HHeJ_G0028797.1 mouse_genomes_project 4 146144029 146153711 + MGP_C3HHeJ_P0068794 Gm13177 protein_coding protein_coding MGP_C3HHeJ_T0100671.1 MGP_C3HHeJ_G0038865.1 mouse_genomes_project 4 131095581 131095664 + Gm24091 snoRNA snoRNA MGP_C3HHeJ_T0067359.1 MGP_C3HHeJ_G0028454.1 mouse_genomes_project 4 124892116 124897986 + MGP_C3HHeJ_P0067359 protein_coding protein_coding MGP_C3HHeJ_T0067360.1 MGP_C3HHeJ_G0028454.1 mouse_genomes_project 4 124896929 124928003 + MGP_C3HHeJ_P0067360 protein_coding protein_coding MGP_C3HHeJ_T0067361.1 MGP_C3HHeJ_G0028454.1 mouse_genomes_project 4 124909747 124913675 + protein_coding processed_transcript MGP_C3HHeJ_T0065945.1 MGP_C3HHeJ_G0028136.1 mouse_genomes_project 4 89363555 89379916 + Dmrta1 protein_coding processed_transcript MGP_C3HHeJ_T0065946.1 MGP_C3HHeJ_G0028136.1 mouse_genomes_project 4 89376220 89382777 + MGP_C3HHeJ_P0065946 Dmrta1 protein_coding protein_coding MGP_C3HHeJ_T0007782.1 MGP_C3HHeJ_G0006357.1 mouse_genomes_project 4 62530905 62540174 - lincRNA lincRNA MGP_C3HHeJ_T0068761.1 MGP_C3HHeJ_G0028771.1 mouse_genomes_project 4 144936693 144941499 - MGP_C3HHeJ_P0068761 Gm13088 protein_coding protein_coding MGP_C3HHeJ_T0065932.1 MGP_C3HHeJ_G0028125.1 mouse_genomes_project 4 88338997 88340035 + MGP_C3HHeJ_P0065932 Gm26566 protein_coding protein_coding MGP_C3HHeJ_T0100640.1 MGP_C3HHeJ_G0038834.1 mouse_genomes_project 4 72243012 72243139 + Gm25769 snoRNA snoRNA MGP_C3HHeJ_T0068764.1 MGP_C3HHeJ_G0028774.1 mouse_genomes_project 4 144979462 144985675 - MGP_C3HHeJ_P0068764 Gm13089 protein_coding protein_coding MGP_C3HHeJ_T0017824.1 MGP_C3HHeJ_G0015307.1 mouse_genomes_project 4 44867117 44870982 + Gm16731 processed_transcript processed_transcript MGP_C3HHeJ_T0067251.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122833394 122848085 - Mfsd2a protein_coding processed_transcript MGP_C3HHeJ_T0067252.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122833394 122848121 - MGP_C3HHeJ_P0067252 Mfsd2a protein_coding protein_coding MGP_C3HHeJ_T0067253.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122843671 122846921 - Mfsd2a protein_coding processed_transcript MGP_C3HHeJ_T0067254.1 MGP_C3HHeJ_G0028426.1 mouse_genomes_project 4 122843698 122848121 - MGP_C3HHeJ_P0067254 Mfsd2a protein_coding protein_coding MGP_C3HHeJ_T0007853.1 MGP_C3HHeJ_G0006415.1 mouse_genomes_project 4 121187130 121194195 + Gm12860 lincRNA lincRNA MGP_C3HHeJ_T0066276.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662160 106689232 - MGP_C3HHeJ_P0066276 Lexm protein_coding protein_coding MGP_C3HHeJ_T0066277.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662160 106689235 - MGP_C3HHeJ_P0066277 Lexm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066278.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662160 106679456 - MGP_C3HHeJ_P0066278 Lexm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066279.1 MGP_C3HHeJ_G0028217.1 mouse_genomes_project 4 106662561 106689232 - MGP_C3HHeJ_P0066279 Lexm protein_coding protein_coding MGP_C3HHeJ_T0068187.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135422962 135431409 - Tmem57 protein_coding processed_transcript MGP_C3HHeJ_T0068188.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135422962 135479177 - MGP_C3HHeJ_P0068188 Tmem57 protein_coding protein_coding MGP_C3HHeJ_T0068189.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135431389 135478981 - MGP_C3HHeJ_P0068189 Tmem57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068190.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135450732 135479095 - MGP_C3HHeJ_P0068190 Tmem57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068191.1 MGP_C3HHeJ_G0028631.1 mouse_genomes_project 4 135461168 135479149 - Tmem57 protein_coding retained_intron MGP_C3HHeJ_T0066029.1 MGP_C3HHeJ_G0028154.1 mouse_genomes_project 4 95861557 95903539 - MGP_C3HHeJ_P0066029 Cyp2j12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066030.1 MGP_C3HHeJ_G0028154.1 mouse_genomes_project 4 95861814 95903525 - MGP_C3HHeJ_P0066030 Cyp2j12 protein_coding protein_coding MGP_C3HHeJ_T0069036.1 MGP_C3HHeJ_G0028851.1 mouse_genomes_project 4 152152951 152171492 + MGP_C3HHeJ_P0069036 Gpr157 protein_coding protein_coding MGP_C3HHeJ_T0014238.1 MGP_C3HHeJ_G0012342.1 mouse_genomes_project 4 6696504 6697427 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014567.1 MGP_C3HHeJ_G0012671.1 mouse_genomes_project 4 119507854 119508860 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065627.1 MGP_C3HHeJ_G0028060.1 mouse_genomes_project 4 62058510 62069323 - MGP_C3HHeJ_P0065627 Ambp protein_coding protein_coding MGP_C3HHeJ_T0065628.1 MGP_C3HHeJ_G0028060.1 mouse_genomes_project 4 62067883 62069949 - MGP_C3HHeJ_P0065628 Ambp protein_coding protein_coding MGP_C3HHeJ_T0007764.1 MGP_C3HHeJ_G0006342.1 mouse_genomes_project 4 53202315 53202791 - Gm29067 lincRNA lincRNA MGP_C3HHeJ_T0101983.1 MGP_C3HHeJ_G0039948.1 mouse_genomes_project 4 41962579 41962881 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007847.1 MGP_C3HHeJ_G0006409.1 mouse_genomes_project 4 116193487 116197295 + Gm12847 lincRNA lincRNA MGP_C3HHeJ_T0101207.1 MGP_C3HHeJ_G0039343.1 mouse_genomes_project 4 42340478 42343210 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101208.1 MGP_C3HHeJ_G0039343.1 mouse_genomes_project 4 42341823 42342630 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0014472.1 MGP_C3HHeJ_G0012576.1 mouse_genomes_project 4 88217021 88219309 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065349.1 MGP_C3HHeJ_G0027981.1 mouse_genomes_project 4 47960724 47977798 - MGP_C3HHeJ_P0065349 Baat protein_coding protein_coding MGP_C3HHeJ_T0065350.1 MGP_C3HHeJ_G0027981.1 mouse_genomes_project 4 47961122 47974401 - MGP_C3HHeJ_P0065350 Baat protein_coding protein_coding MGP_C3HHeJ_T0098129.1 MGP_C3HHeJ_G0036341.1 mouse_genomes_project 4 41886008 41886140 + Gm23257 rRNA rRNA MGP_C3HHeJ_T0099359.1 MGP_C3HHeJ_G0037553.1 mouse_genomes_project 4 82928860 82929001 - Gm25899 snRNA snRNA MGP_C3HHeJ_T0069229.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154680013 154766537 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0069230.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154681214 154766266 + MGP_C3HHeJ_P0069230 Nphp4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069231.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154681449 154766671 + MGP_C3HHeJ_P0069231 Nphp4 protein_coding protein_coding MGP_C3HHeJ_T0069232.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154681485 154694413 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0069233.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154687677 154766535 + MGP_C3HHeJ_P0069233 Nphp4 protein_coding protein_coding MGP_C3HHeJ_T0069234.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154692317 154702184 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0069235.1 MGP_C3HHeJ_G0028885.1 mouse_genomes_project 4 154706856 154721852 + Nphp4 protein_coding processed_transcript MGP_C3HHeJ_T0102023.1 MGP_C3HHeJ_G0039988.1 mouse_genomes_project 4 144729872 144730373 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007736.1 MGP_C3HHeJ_G0006318.1 mouse_genomes_project 4 26365027 26366085 + Gm11916 lincRNA lincRNA MGP_C3HHeJ_T0010574.1 MGP_C3HHeJ_G0008707.1 mouse_genomes_project 4 158601611 158601668 - Mir7658 miRNA miRNA MGP_C3HHeJ_T0014263.1 MGP_C3HHeJ_G0012367.1 mouse_genomes_project 4 13028083 13028213 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099382.1 MGP_C3HHeJ_G0037576.1 mouse_genomes_project 4 117666075 117666191 + Gm23143 snRNA snRNA MGP_C3HHeJ_T0064537.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23472990 23496319 - MGP_C3HHeJ_P0064537 Manea protein_coding protein_coding MGP_C3HHeJ_T0064538.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23476529 23490377 - Manea protein_coding processed_transcript MGP_C3HHeJ_T0064539.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23489941 23496282 - Manea protein_coding processed_transcript MGP_C3HHeJ_T0064540.1 MGP_C3HHeJ_G0027804.1 mouse_genomes_project 4 23490232 23496319 - MGP_C3HHeJ_P0064540 Manea protein_coding protein_coding MGP_C3HHeJ_T0064425.1 MGP_C3HHeJ_G0027773.1 mouse_genomes_project 4 12849248 12885221 + MGP_C3HHeJ_P0064425 Nbn protein_coding protein_coding MGP_C3HHeJ_T0064426.1 MGP_C3HHeJ_G0027773.1 mouse_genomes_project 4 12849290 12873991 + MGP_C3HHeJ_P0064426 Nbn protein_coding protein_coding MGP_C3HHeJ_T0069445.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157984029 157986759 - MGP_C3HHeJ_P0069445 Mmp23 protein_coding protein_coding MGP_C3HHeJ_T0069446.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157984031 157985400 - Mmp23 protein_coding retained_intron MGP_C3HHeJ_T0069447.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157985627 157986582 - Mmp23 protein_coding retained_intron MGP_C3HHeJ_T0069448.1 MGP_C3HHeJ_G0028922.1 mouse_genomes_project 4 157985644 157986267 - Mmp23 protein_coding retained_intron MGP_C3HHeJ_T0064837.1 MGP_C3HHeJ_G0027878.1 mouse_genomes_project 4 39750415 39759139 - MGP_C3HHeJ_P0064837 Dctn3 protein_coding protein_coding MGP_C3HHeJ_T0064838.1 MGP_C3HHeJ_G0027878.1 mouse_genomes_project 4 39750415 39759132 - MGP_C3HHeJ_P0064838 Dctn3 protein_coding protein_coding MGP_C3HHeJ_T0064839.1 MGP_C3HHeJ_G0027878.1 mouse_genomes_project 4 39755754 39759106 - Dctn3 protein_coding processed_transcript MGP_C3HHeJ_T0007722.1 MGP_C3HHeJ_G0006305.1 mouse_genomes_project 4 9913687 9936380 + Gm11820 lincRNA lincRNA MGP_C3HHeJ_T0007939.1 MGP_C3HHeJ_G0006475.1 mouse_genomes_project 4 151826889 151833970 + Gm16188 lincRNA lincRNA MGP_C3HHeJ_T0064207.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 562593 600216 - MGP_C3HHeJ_P0064207 Plag1 protein_coding protein_coding MGP_C3HHeJ_T0064208.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 566487 600239 - MGP_C3HHeJ_P0064208 Plag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064209.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 567146 600257 - MGP_C3HHeJ_P0064209 Plag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064210.1 MGP_C3HHeJ_G0027726.1 mouse_genomes_project 4 573454 600227 - Plag1 protein_coding retained_intron MGP_C3HHeJ_T0068300.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136760091 136760629 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068301.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136760091 136789713 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068302.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136785944 136790421 - MGP_C3HHeJ_P0068302 Rpl11 protein_coding protein_coding MGP_C3HHeJ_T0068303.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786160 136786740 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068304.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786203 136790024 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068305.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786493 136790118 - MGP_C3HHeJ_P0068305 Rpl11 protein_coding protein_coding MGP_C3HHeJ_T0068306.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786545 136789782 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068307.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136786846 136789734 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068308.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136787241 136789744 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0068309.1 MGP_C3HHeJ_G0028656.1 mouse_genomes_project 4 136787454 136790456 - Rpl11 protein_coding processed_transcript MGP_C3HHeJ_T0064374.1 MGP_C3HHeJ_G0027758.1 mouse_genomes_project 4 8798120 8799824 - MGP_C3HHeJ_P0064374 Gm10604 protein_coding protein_coding MGP_C3HHeJ_T0068784.1 MGP_C3HHeJ_G0028788.1 mouse_genomes_project 4 145839321 145859179 + MGP_C3HHeJ_P0068784 protein_coding protein_coding MGP_C3HHeJ_T0064270.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5375728 5445239 + Chd7 protein_coding retained_intron MGP_C3HHeJ_T0064271.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5376817 5476192 + MGP_C3HHeJ_P0064271 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064272.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5377260 5558552 + MGP_C3HHeJ_P0064272 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064273.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5377704 5559400 + MGP_C3HHeJ_P0064273 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064274.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5396709 5440895 + MGP_C3HHeJ_P0064274 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064275.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5440770 5558966 + MGP_C3HHeJ_P0064275 Chd7 protein_coding protein_coding MGP_C3HHeJ_T0064276.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5440837 5559397 + MGP_C3HHeJ_P0064276 Chd7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064277.1 MGP_C3HHeJ_G0027740.1 mouse_genomes_project 4 5531284 5535675 + Chd7 protein_coding processed_transcript MGP_C3HHeJ_T0064769.1 MGP_C3HHeJ_G0027860.1 mouse_genomes_project 4 39472069 39479543 - MGP_C3HHeJ_P0064769 AI464131 protein_coding protein_coding MGP_C3HHeJ_T0064770.1 MGP_C3HHeJ_G0027860.1 mouse_genomes_project 4 39475961 39479135 - MGP_C3HHeJ_P0064770 AI464131 protein_coding protein_coding MGP_C3HHeJ_T0066878.1 MGP_C3HHeJ_G0028334.1 mouse_genomes_project 4 117318591 117432171 + MGP_C3HHeJ_P0066878 Zswim5 protein_coding protein_coding MGP_C3HHeJ_T0014412.1 MGP_C3HHeJ_G0012516.1 mouse_genomes_project 4 61861146 61861810 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064840.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39759804 39769906 - MGP_C3HHeJ_P0064840 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0064841.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39760107 39766250 - MGP_C3HHeJ_P0064841 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0064842.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39760107 39766250 - MGP_C3HHeJ_P0064842 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0064843.1 MGP_C3HHeJ_G0027879.1 mouse_genomes_project 4 39765889 39769906 - MGP_C3HHeJ_P0064843 Arid3c protein_coding protein_coding MGP_C3HHeJ_T0066572.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604488 109627172 + MGP_C3HHeJ_P0066572 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066573.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604952 109643622 + MGP_C3HHeJ_P0066573 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066574.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604975 109623276 + MGP_C3HHeJ_P0066574 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066575.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109604994 109621980 + Ttc39a protein_coding processed_transcript MGP_C3HHeJ_T0066576.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109612660 109627240 + MGP_C3HHeJ_P0066576 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066577.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109613532 109643259 + MGP_C3HHeJ_P0066577 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0066578.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109613658 109620415 + Ttc39a protein_coding processed_transcript MGP_C3HHeJ_T0066579.1 MGP_C3HHeJ_G0028266.1 mouse_genomes_project 4 109619979 109625403 + MGP_C3HHeJ_P0066579 Ttc39a protein_coding protein_coding MGP_C3HHeJ_T0068830.1 MGP_C3HHeJ_G0028810.1 mouse_genomes_project 4 149795694 149797004 + MGP_C3HHeJ_P0068830 Fv1 protein_coding protein_coding MGP_C3HHeJ_T0014625.1 MGP_C3HHeJ_G0012729.1 mouse_genomes_project 4 136727243 136727608 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064788.1 MGP_C3HHeJ_G0027864.1 mouse_genomes_project 4 39619575 39621766 - MGP_C3HHeJ_P0064788 Enho protein_coding protein_coding MGP_C3HHeJ_T0011460.1 MGP_C3HHeJ_G0009593.1 mouse_genomes_project 4 15688198 15688486 + Gm25971 misc_RNA misc_RNA MGP_C3HHeJ_T0069186.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154492402 154502297 + MGP_C3HHeJ_P0069186 Icmt protein_coding protein_coding MGP_C3HHeJ_T0069187.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154492479 154502296 + MGP_C3HHeJ_P0069187 Icmt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069188.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154492831 154495930 + Icmt protein_coding processed_transcript MGP_C3HHeJ_T0069189.1 MGP_C3HHeJ_G0028880.1 mouse_genomes_project 4 154500562 154502244 + Icmt protein_coding processed_transcript MGP_C3HHeJ_T0007769.1 MGP_C3HHeJ_G0006346.1 mouse_genomes_project 4 54142471 54180868 + Gm12511 lincRNA lincRNA MGP_C3HHeJ_T0014563.1 MGP_C3HHeJ_G0012667.1 mouse_genomes_project 4 118946251 118946459 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066113.1 MGP_C3HHeJ_G0028175.1 mouse_genomes_project 4 99586691 99589015 + MGP_C3HHeJ_P0066113 Foxd3 protein_coding protein_coding MGP_C3HHeJ_T0017834.1 MGP_C3HHeJ_G0015313.1 mouse_genomes_project 4 72912975 72920217 + Gm11240 processed_transcript processed_transcript MGP_C3HHeJ_T0066519.1 MGP_C3HHeJ_G0028260.1 mouse_genomes_project 4 109025026 109026655 + MGP_C3HHeJ_P0066519 Kti12 protein_coding protein_coding MGP_C3HHeJ_T0069215.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154592128 154652070 - MGP_C3HHeJ_P0069215 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069216.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154592130 154681179 - MGP_C3HHeJ_P0069216 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069217.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154592131 154680833 - MGP_C3HHeJ_P0069217 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069218.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154594107 154680741 - MGP_C3HHeJ_P0069218 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069219.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154594168 154652070 - MGP_C3HHeJ_P0069219 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069220.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154596374 154625235 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069221.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154603508 154633139 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069222.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154604428 154658243 - MGP_C3HHeJ_P0069222 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0069223.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154605528 154651971 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069224.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154614333 154680852 - Kcnab2 protein_coding retained_intron MGP_C3HHeJ_T0069225.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154614487 154628336 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069226.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154615317 154620898 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069227.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154628905 154651971 - Kcnab2 protein_coding processed_transcript MGP_C3HHeJ_T0069228.1 MGP_C3HHeJ_G0028884.1 mouse_genomes_project 4 154637277 154680803 - MGP_C3HHeJ_P0069228 Kcnab2 protein_coding protein_coding MGP_C3HHeJ_T0066941.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117757700 117775514 - MGP_C3HHeJ_P0066941 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066942.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117757708 117995028 - MGP_C3HHeJ_P0066942 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066943.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117758172 117870161 - MGP_C3HHeJ_P0066943 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066944.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117762768 117771723 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066945.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117763676 117776088 - MGP_C3HHeJ_P0066945 Rnf220 protein_coding protein_coding MGP_C3HHeJ_T0066946.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117771340 117775700 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066947.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117771627 117775369 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066948.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117772137 117786704 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066949.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117793509 117994925 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0066950.1 MGP_C3HHeJ_G0028346.1 mouse_genomes_project 4 117988230 117993007 - Rnf220 protein_coding processed_transcript MGP_C3HHeJ_T0014549.1 MGP_C3HHeJ_G0012653.1 mouse_genomes_project 4 116011550 116012642 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069374.1 MGP_C3HHeJ_G0028911.1 mouse_genomes_project 4 157463971 157498758 - Ski protein_coding processed_transcript MGP_C3HHeJ_T0069375.1 MGP_C3HHeJ_G0028911.1 mouse_genomes_project 4 157463971 157532711 - MGP_C3HHeJ_P0069375 Ski protein_coding protein_coding MGP_C3HHeJ_T0069376.1 MGP_C3HHeJ_G0028911.1 mouse_genomes_project 4 157463971 157532768 - MGP_C3HHeJ_P0069376 Ski protein_coding protein_coding MGP_C3HHeJ_T0100651.1 MGP_C3HHeJ_G0038845.1 mouse_genomes_project 4 93842480 93842609 + Gm23836 snoRNA snoRNA MGP_C3HHeJ_T0064321.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7921623 7939545 + MGP_C3HHeJ_P0064321 Trp53inp1 protein_coding protein_coding MGP_C3HHeJ_T0064322.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7921633 7939545 + Trp53inp1 protein_coding processed_transcript MGP_C3HHeJ_T0064323.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7921636 7931596 + Trp53inp1 protein_coding processed_transcript MGP_C3HHeJ_T0064324.1 MGP_C3HHeJ_G0027747.1 mouse_genomes_project 4 7929645 7933210 + Trp53inp1 protein_coding processed_transcript MGP_C3HHeJ_T0064697.1 MGP_C3HHeJ_G0027841.1 mouse_genomes_project 4 38179260 38188319 - MGP_C3HHeJ_P0064697 Ndufb6 protein_coding protein_coding MGP_C3HHeJ_T0064698.1 MGP_C3HHeJ_G0027841.1 mouse_genomes_project 4 38179334 38188307 - MGP_C3HHeJ_P0064698 Ndufb6 protein_coding protein_coding MGP_C3HHeJ_T0014305.1 MGP_C3HHeJ_G0012409.1 mouse_genomes_project 4 23748521 23749199 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007930.1 MGP_C3HHeJ_G0006466.1 mouse_genomes_project 4 141776437 141781707 + Gm13025 lincRNA lincRNA MGP_C3HHeJ_T0001373.1 MGP_C3HHeJ_G0001304.1 mouse_genomes_project 4 13289929 13290535 + TEC TEC MGP_C3HHeJ_T0068635.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258847 - Szrd1 protein_coding processed_transcript MGP_C3HHeJ_T0068636.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258847 - Szrd1 protein_coding processed_transcript MGP_C3HHeJ_T0068637.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258838 - MGP_C3HHeJ_P0068637 Szrd1 protein_coding protein_coding MGP_C3HHeJ_T0068638.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142230796 142258799 - MGP_C3HHeJ_P0068638 Szrd1 protein_coding protein_coding MGP_C3HHeJ_T0068639.1 MGP_C3HHeJ_G0028736.1 mouse_genomes_project 4 142234362 142258812 - Szrd1 protein_coding processed_transcript MGP_C3HHeJ_T0014306.1 MGP_C3HHeJ_G0012410.1 mouse_genomes_project 4 24308960 24309208 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067082.1 MGP_C3HHeJ_G0028384.1 mouse_genomes_project 4 119479527 119486830 + MGP_C3HHeJ_P0067082 Lao1 protein_coding protein_coding MGP_C3HHeJ_T0067083.1 MGP_C3HHeJ_G0028384.1 mouse_genomes_project 4 119483313 119486001 + Lao1 protein_coding processed_transcript MGP_C3HHeJ_T0098478.1 MGP_C3HHeJ_G0036683.1 mouse_genomes_project 4 143216286 143221969 - Gm13053 sense_intronic sense_intronic MGP_C3HHeJ_T0065931.1 MGP_C3HHeJ_G0028124.1 mouse_genomes_project 4 88335467 88339658 - MGP_C3HHeJ_P0065931 Klhl9 protein_coding protein_coding MGP_C3HHeJ_T0014418.1 MGP_C3HHeJ_G0012522.1 mouse_genomes_project 4 66201473 66201842 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065184.1 MGP_C3HHeJ_G0027939.1 mouse_genomes_project 4 43301872 43353921 - MGP_C3HHeJ_P0065184 Fbxo10 protein_coding protein_coding MGP_C3HHeJ_T0065185.1 MGP_C3HHeJ_G0027939.1 mouse_genomes_project 4 43301873 43330137 - MGP_C3HHeJ_P0065185 Fbxo10 protein_coding protein_coding MGP_C3HHeJ_T0065186.1 MGP_C3HHeJ_G0027939.1 mouse_genomes_project 4 43314420 43326751 - Fbxo10 protein_coding processed_transcript MGP_C3HHeJ_T0065554.1 MGP_C3HHeJ_G0028039.1 mouse_genomes_project 4 58401291 58537730 + MGP_C3HHeJ_P0065554 E130308A19Rik protein_coding protein_coding MGP_C3HHeJ_T0065555.1 MGP_C3HHeJ_G0028039.1 mouse_genomes_project 4 58401323 58495881 + MGP_C3HHeJ_P0065555 E130308A19Rik protein_coding protein_coding MGP_C3HHeJ_T0065556.1 MGP_C3HHeJ_G0028039.1 mouse_genomes_project 4 58464749 58494723 + E130308A19Rik protein_coding processed_transcript MGP_C3HHeJ_T0098252.1 MGP_C3HHeJ_G0036464.1 mouse_genomes_project 4 50317632 50318065 + Gm24943 ribozyme ribozyme MGP_C3HHeJ_T0004542.1 MGP_C3HHeJ_G0003935.1 mouse_genomes_project 4 158065235 158067412 - 1500002C15Rik antisense antisense MGP_C3HHeJ_T0004543.1 MGP_C3HHeJ_G0003935.1 mouse_genomes_project 4 158065238 158067312 - 1500002C15Rik antisense antisense MGP_C3HHeJ_T0066472.1 MGP_C3HHeJ_G0028247.1 mouse_genomes_project 4 108363694 108430820 - MGP_C3HHeJ_P0066472 Zyg11b protein_coding protein_coding MGP_C3HHeJ_T0010531.1 MGP_C3HHeJ_G0008664.1 mouse_genomes_project 4 121354096 121354188 - Mir30e miRNA miRNA MGP_C3HHeJ_T0100620.1 MGP_C3HHeJ_G0038814.1 mouse_genomes_project 4 42651315 42651442 - Gm24376 snoRNA snoRNA MGP_C3HHeJ_T0067537.1 MGP_C3HHeJ_G0028495.1 mouse_genomes_project 4 127494552 127497925 - MGP_C3HHeJ_P0067537 Gjb5 protein_coding protein_coding MGP_C3HHeJ_T0064340.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8031975 8074690 - MGP_C3HHeJ_P0064340 Dpy19l4 protein_coding protein_coding MGP_C3HHeJ_T0064341.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8031975 8095797 - MGP_C3HHeJ_P0064341 Dpy19l4 protein_coding protein_coding MGP_C3HHeJ_T0064342.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8048912 8095797 - MGP_C3HHeJ_P0064342 Dpy19l4 protein_coding protein_coding MGP_C3HHeJ_T0064343.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8052130 8095735 - MGP_C3HHeJ_P0064343 Dpy19l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064344.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8074703 8095707 - Dpy19l4 protein_coding processed_transcript MGP_C3HHeJ_T0064345.1 MGP_C3HHeJ_G0027750.1 mouse_genomes_project 4 8091029 8095760 - Dpy19l4 protein_coding processed_transcript MGP_C3HHeJ_T0014322.1 MGP_C3HHeJ_G0012426.1 mouse_genomes_project 4 28797010 28797485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066075.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98579151 98587093 + MGP_C3HHeJ_P0066075 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0066076.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98579165 98591890 + MGP_C3HHeJ_P0066076 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0066077.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98579210 98587009 + MGP_C3HHeJ_P0066077 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0066078.1 MGP_C3HHeJ_G0028167.1 mouse_genomes_project 4 98586651 98591526 + MGP_C3HHeJ_P0066078 L1td1 protein_coding protein_coding MGP_C3HHeJ_T0067830.1 MGP_C3HHeJ_G0028552.1 mouse_genomes_project 4 131290346 131300882 + MGP_C3HHeJ_P0067830 Matn1 protein_coding protein_coding MGP_C3HHeJ_T0068241.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136137729 136189513 - MGP_C3HHeJ_P0068241 Nipal3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068242.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136138446 136189513 - MGP_C3HHeJ_P0068242 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068243.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136141189 136189630 - MGP_C3HHeJ_P0068243 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068244.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136144183 136163227 - MGP_C3HHeJ_P0068244 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068245.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136144474 136147353 - Nipal3 protein_coding processed_transcript MGP_C3HHeJ_T0068246.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136144564 136147625 - Nipal3 protein_coding processed_transcript MGP_C3HHeJ_T0068247.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136171414 136189975 - MGP_C3HHeJ_P0068247 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0068248.1 MGP_C3HHeJ_G0028641.1 mouse_genomes_project 4 136174326 136190044 - MGP_C3HHeJ_P0068248 Nipal3 protein_coding protein_coding MGP_C3HHeJ_T0010543.1 MGP_C3HHeJ_G0008676.1 mouse_genomes_project 4 132632954 132633044 - Gm22033 miRNA miRNA MGP_C3HHeJ_T0066591.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422887 110514097 - MGP_C3HHeJ_P0066591 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066592.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110513459 - MGP_C3HHeJ_P0066592 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066593.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110514097 - MGP_C3HHeJ_P0066593 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066594.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110513459 - MGP_C3HHeJ_P0066594 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066595.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110576990 - MGP_C3HHeJ_P0066595 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066596.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110519207 - MGP_C3HHeJ_P0066596 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066597.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110422902 110516744 - MGP_C3HHeJ_P0066597 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066598.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110425523 110442247 - Elavl4 protein_coding processed_transcript MGP_C3HHeJ_T0066599.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110432365 110513186 - MGP_C3HHeJ_P0066599 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066600.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110444679 110500718 - Elavl4 protein_coding processed_transcript MGP_C3HHeJ_T0066601.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110445708 110514097 - MGP_C3HHeJ_P0066601 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066602.1 MGP_C3HHeJ_G0028272.1 mouse_genomes_project 4 110477267 110517366 - MGP_C3HHeJ_P0066602 Elavl4 protein_coding protein_coding MGP_C3HHeJ_T0066666.1 MGP_C3HHeJ_G0028286.1 mouse_genomes_project 4 115168494 115171074 - MGP_C3HHeJ_P0066666 Foxd2 protein_coding protein_coding MGP_C3HHeJ_T0099376.1 MGP_C3HHeJ_G0037570.1 mouse_genomes_project 4 109181072 109181177 - Gm23589 snRNA snRNA MGP_C3HHeJ_T0102019.1 MGP_C3HHeJ_G0039984.1 mouse_genomes_project 4 122604545 122608995 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007797.1 MGP_C3HHeJ_G0006370.1 mouse_genomes_project 4 83290115 83294236 - Gm11415 lincRNA lincRNA MGP_C3HHeJ_T0007921.1 MGP_C3HHeJ_G0006458.1 mouse_genomes_project 4 140373884 140378476 - 2700016F22Rik lincRNA lincRNA MGP_C3HHeJ_T0014460.1 MGP_C3HHeJ_G0012564.1 mouse_genomes_project 4 82891680 82891943 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066343.1 MGP_C3HHeJ_G0028227.1 mouse_genomes_project 4 107196238 107207122 + MGP_C3HHeJ_P0066343 Cdcp2 protein_coding protein_coding MGP_C3HHeJ_T0066776.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116508396 116523956 + Pomgnt1 protein_coding processed_transcript MGP_C3HHeJ_T0066778.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116522342 116545561 + MGP_C3HHeJ_P0066778 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066779.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116522357 116545562 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0066781.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116522860 116545557 + MGP_C3HHeJ_P0066781 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066782.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116536230 116545557 + MGP_C3HHeJ_P0066782 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066783.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116536237 116545557 + MGP_C3HHeJ_P0066783 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066784.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116537143 116545150 + MGP_C3HHeJ_P0066784 Pomgnt1 protein_coding protein_coding MGP_C3HHeJ_T0066785.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116540307 116541505 + Pomgnt1 protein_coding processed_transcript MGP_C3HHeJ_T0066786.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116541031 116544707 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0066787.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116541649 116542366 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0066788.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116541661 116544771 + Pomgnt1 protein_coding processed_transcript MGP_C3HHeJ_T0066789.1 MGP_C3HHeJ_G0028315.1 mouse_genomes_project 4 116543104 116544738 + Pomgnt1 protein_coding retained_intron MGP_C3HHeJ_T0067933.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109512 133163950 + MGP_C3HHeJ_P0067933 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067934.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109571 133195357 + MGP_C3HHeJ_P0067934 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067935.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109581 133195354 + MGP_C3HHeJ_P0067935 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067936.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109583 133171064 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067937.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109589 133162162 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067938.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109604 133191824 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067939.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109604 133193024 + MGP_C3HHeJ_P0067939 Eya3 protein_coding protein_coding MGP_C3HHeJ_T0067940.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109610 133193166 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067941.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133109642 133164135 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067942.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133127955 133193132 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067943.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133172995 133183649 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0067944.1 MGP_C3HHeJ_G0028572.1 mouse_genomes_project 4 133176377 133191335 + Eya3 protein_coding processed_transcript MGP_C3HHeJ_T0007900.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740530 132742877 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007901.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740530 132741824 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007902.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740530 132742875 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007903.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132740545 132742612 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007904.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132741481 132742877 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007905.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132741670 132742848 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0007906.1 MGP_C3HHeJ_G0006446.1 mouse_genomes_project 4 132742039 132742877 + Snhg12 lincRNA lincRNA MGP_C3HHeJ_T0069001.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701748 151751645 - MGP_C3HHeJ_P0069001 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069002.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701748 151751635 - MGP_C3HHeJ_P0069002 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069003.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701750 151726697 - MGP_C3HHeJ_P0069003 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069004.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701750 151754527 - MGP_C3HHeJ_P0069004 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069005.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151701751 151728547 - MGP_C3HHeJ_P0069005 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069006.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151702397 151751542 - MGP_C3HHeJ_P0069006 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069007.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151703220 151715906 - MGP_C3HHeJ_P0069007 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069008.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712393 151727689 - MGP_C3HHeJ_P0069008 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069009.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712472 151728128 - MGP_C3HHeJ_P0069009 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069010.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712634 151751541 - MGP_C3HHeJ_P0069010 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069011.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151712799 151751489 - MGP_C3HHeJ_P0069011 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069012.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151715774 151755508 - MGP_C3HHeJ_P0069012 Pik3cd protein_coding protein_coding MGP_C3HHeJ_T0069013.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151725941 151728596 - Pik3cd protein_coding processed_transcript MGP_C3HHeJ_T0069014.1 MGP_C3HHeJ_G0028846.1 mouse_genomes_project 4 151726267 151754527 - Pik3cd protein_coding processed_transcript MGP_C3HHeJ_T0065246.1 MGP_C3HHeJ_G0027953.1 mouse_genomes_project 4 44451793 44491947 + MGP_C3HHeJ_P0065246 Ncbp1 protein_coding protein_coding MGP_C3HHeJ_T0065248.1 MGP_C3HHeJ_G0027953.1 mouse_genomes_project 4 44477450 44479644 + Ncbp1 protein_coding processed_transcript MGP_C3HHeJ_T0065249.1 MGP_C3HHeJ_G0027953.1 mouse_genomes_project 4 44484741 44491523 + Ncbp1 protein_coding processed_transcript MGP_C3HHeJ_T0011477.1 MGP_C3HHeJ_G0009610.1 mouse_genomes_project 4 89120424 89120573 + Gm27580 misc_RNA misc_RNA MGP_C3HHeJ_T0067322.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123888085 123907562 + MGP_C3HHeJ_P0067322 Rragc protein_coding protein_coding MGP_C3HHeJ_T0067323.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123888113 123907558 + MGP_C3HHeJ_P0067323 Rragc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067325.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123889744 123891649 + Rragc protein_coding processed_transcript MGP_C3HHeJ_T0067326.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123891564 123900633 + Rragc protein_coding retained_intron MGP_C3HHeJ_T0067327.1 MGP_C3HHeJ_G0028443.1 mouse_genomes_project 4 123891939 123906111 + Rragc protein_coding processed_transcript MGP_C3HHeJ_T0007708.1 MGP_C3HHeJ_G0006296.1 mouse_genomes_project 4 2195460 2201446 - Gm11782 lincRNA lincRNA MGP_C3HHeJ_T0067815.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131121862 131156764 + MGP_C3HHeJ_P0067815 Sdc3 protein_coding protein_coding MGP_C3HHeJ_T0067816.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131122029 131147718 + Sdc3 protein_coding retained_intron MGP_C3HHeJ_T0067817.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131141876 131149504 + MGP_C3HHeJ_P0067817 Sdc3 protein_coding protein_coding MGP_C3HHeJ_T0067818.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131144748 131149504 + MGP_C3HHeJ_P0067818 Sdc3 protein_coding protein_coding MGP_C3HHeJ_T0067819.1 MGP_C3HHeJ_G0028550.1 mouse_genomes_project 4 131147289 131152695 + Sdc3 protein_coding retained_intron MGP_C3HHeJ_T0010568.1 MGP_C3HHeJ_G0008701.1 mouse_genomes_project 4 152132526 152132628 + Mir34a miRNA miRNA MGP_C3HHeJ_T0014346.1 MGP_C3HHeJ_G0012450.1 mouse_genomes_project 4 36001599 36002143 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011474.1 MGP_C3HHeJ_G0009607.1 mouse_genomes_project 4 69489007 69489313 - Gm26320 misc_RNA misc_RNA MGP_C3HHeJ_T0001380.1 MGP_C3HHeJ_G0001311.1 mouse_genomes_project 4 99288890 99298483 - TEC TEC MGP_C3HHeJ_T0068614.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142131806 142144345 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068615.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142131806 142137294 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068616.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142132148 142133970 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068617.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142132215 142169890 - MGP_C3HHeJ_P0068617 Crocc protein_coding protein_coding MGP_C3HHeJ_T0068618.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142134894 142137686 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068619.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142136707 142137716 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0068620.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142159729 142176690 - MGP_C3HHeJ_P0068620 Crocc protein_coding protein_coding MGP_C3HHeJ_T0068621.1 MGP_C3HHeJ_G0028733.1 mouse_genomes_project 4 142160959 142174258 - Crocc protein_coding retained_intron MGP_C3HHeJ_T0067239.1 MGP_C3HHeJ_G0028423.1 mouse_genomes_project 4 122571374 122586624 + MGP_C3HHeJ_P0067239 9530002B09Rik protein_coding protein_coding MGP_C3HHeJ_T0014440.1 MGP_C3HHeJ_G0012544.1 mouse_genomes_project 4 74464732 74465912 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004394.1 MGP_C3HHeJ_G0003825.1 mouse_genomes_project 4 82069452 82070359 + Gm11269 antisense antisense MGP_C3HHeJ_T0099405.1 MGP_C3HHeJ_G0037599.1 mouse_genomes_project 4 142034106 142034222 + Gm26226 snRNA snRNA MGP_C3HHeJ_T0011462.1 MGP_C3HHeJ_G0009595.1 mouse_genomes_project 4 16530447 16530737 - Gm25655 misc_RNA misc_RNA MGP_C3HHeJ_T0067850.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132267903 132295148 + MGP_C3HHeJ_P0067850 Srsf4 protein_coding protein_coding MGP_C3HHeJ_T0067851.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132268102 132286431 + MGP_C3HHeJ_P0067851 Srsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067852.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132278581 132291276 + MGP_C3HHeJ_P0067852 Srsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067853.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132279249 132295149 + MGP_C3HHeJ_P0067853 Srsf4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067854.1 MGP_C3HHeJ_G0028555.1 mouse_genomes_project 4 132279494 132295148 + Srsf4 protein_coding retained_intron MGP_C3HHeJ_T0014436.1 MGP_C3HHeJ_G0012540.1 mouse_genomes_project 4 73798898 73800116 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010535.1 MGP_C3HHeJ_G0008668.1 mouse_genomes_project 4 124734973 124735082 + Mir697 miRNA miRNA MGP_C3HHeJ_T0065915.1 MGP_C3HHeJ_G0028116.1 mouse_genomes_project 4 88012637 88057662 - MGP_C3HHeJ_P0065915 Hacd4 protein_coding protein_coding MGP_C3HHeJ_T0065918.1 MGP_C3HHeJ_G0028116.1 mouse_genomes_project 4 88027641 88057675 - MGP_C3HHeJ_P0065918 Hacd4 protein_coding protein_coding MGP_C3HHeJ_T0065919.1 MGP_C3HHeJ_G0028116.1 mouse_genomes_project 4 88030231 88057673 - MGP_C3HHeJ_P0065919 Hacd4 protein_coding protein_coding MGP_C3HHeJ_T0069484.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148682 158161473 + MGP_C3HHeJ_P0069484 Ccnl2 protein_coding protein_coding MGP_C3HHeJ_T0069485.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148694 158161473 + Ccnl2 protein_coding retained_intron MGP_C3HHeJ_T0069486.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148712 158157992 + Ccnl2 protein_coding retained_intron MGP_C3HHeJ_T0069487.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158148971 158152040 + Ccnl2 protein_coding retained_intron MGP_C3HHeJ_T0069488.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158149678 158161233 + MGP_C3HHeJ_P0069488 Ccnl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069489.1 MGP_C3HHeJ_G0028932.1 mouse_genomes_project 4 158156463 158161283 + MGP_C3HHeJ_P0069489 Ccnl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067230.1 MGP_C3HHeJ_G0028418.1 mouse_genomes_project 4 121652571 121692406 - MGP_C3HHeJ_P0067230 Zmpste24 protein_coding protein_coding MGP_C3HHeJ_T0067231.1 MGP_C3HHeJ_G0028418.1 mouse_genomes_project 4 121662036 121671868 - Zmpste24 protein_coding processed_transcript MGP_C3HHeJ_T0067232.1 MGP_C3HHeJ_G0028418.1 mouse_genomes_project 4 121677072 121689863 - MGP_C3HHeJ_P0067232 Zmpste24 protein_coding protein_coding MGP_C3HHeJ_T0101988.1 MGP_C3HHeJ_G0039953.1 mouse_genomes_project 4 60915446 60917765 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098250.1 MGP_C3HHeJ_G0036462.1 mouse_genomes_project 4 18310220 18310576 + Gm22817 ribozyme ribozyme MGP_C3HHeJ_T0065936.1 MGP_C3HHeJ_G0028129.1 mouse_genomes_project 4 88468244 88468907 + MGP_C3HHeJ_P0065936 Ifna5 protein_coding protein_coding MGP_C3HHeJ_T0007856.1 MGP_C3HHeJ_G0006418.1 mouse_genomes_project 4 124293260 124301885 - 1700021L23Rik lincRNA lincRNA MGP_C3HHeJ_T0014492.1 MGP_C3HHeJ_G0012596.1 mouse_genomes_project 4 95316418 95316747 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007788.1 MGP_C3HHeJ_G0006363.1 mouse_genomes_project 4 70185683 70241248 - Gm11228 lincRNA lincRNA MGP_C3HHeJ_T0069015.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151768205 151790862 - MGP_C3HHeJ_P0069015 Tmem201 protein_coding protein_coding MGP_C3HHeJ_T0069016.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151768213 151790862 - MGP_C3HHeJ_P0069016 Tmem201 protein_coding protein_coding MGP_C3HHeJ_T0069017.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151777700 151783514 - Tmem201 protein_coding retained_intron MGP_C3HHeJ_T0069018.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151777700 151790862 - MGP_C3HHeJ_P0069018 Tmem201 protein_coding protein_coding MGP_C3HHeJ_T0069019.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151781626 151790816 - Tmem201 protein_coding retained_intron MGP_C3HHeJ_T0069020.1 MGP_C3HHeJ_G0028847.1 mouse_genomes_project 4 151783990 151790588 - Tmem201 protein_coding processed_transcript MGP_C3HHeJ_T0068006.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133797203 133846214 - MGP_C3HHeJ_P0068006 Wdtc1 protein_coding protein_coding MGP_C3HHeJ_T0068007.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133813272 133859780 - Wdtc1 protein_coding processed_transcript MGP_C3HHeJ_T0068008.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133817545 133827239 - Wdtc1 protein_coding processed_transcript MGP_C3HHeJ_T0068009.1 MGP_C3HHeJ_G0028588.1 mouse_genomes_project 4 133818170 133860349 - Wdtc1 protein_coding processed_transcript MGP_C3HHeJ_T0014464.1 MGP_C3HHeJ_G0012568.1 mouse_genomes_project 4 84366717 84367644 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014228.1 MGP_C3HHeJ_G0012332.1 mouse_genomes_project 4 2502123 2503095 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064895.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41144969 41168057 - MGP_C3HHeJ_P0064895 Vcp protein_coding protein_coding MGP_C3HHeJ_T0064896.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41146374 41167728 - MGP_C3HHeJ_P0064896 Vcp protein_coding unknown_likely_coding MGP_C3HHeJ_T0064897.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41150251 41151707 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0064898.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41152050 41155140 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0064899.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41158361 41159385 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0064900.1 MGP_C3HHeJ_G0027894.1 mouse_genomes_project 4 41159338 41167983 - Vcp protein_coding processed_transcript MGP_C3HHeJ_T0010539.1 MGP_C3HHeJ_G0008672.1 mouse_genomes_project 4 129808476 129808605 - Mir8119 miRNA miRNA MGP_C3HHeJ_T0064570.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30099134 30221442 + MGP_C3HHeJ_P0064570 Mdn1 protein_coding protein_coding MGP_C3HHeJ_T0064571.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30099134 30221452 + MGP_C3HHeJ_P0064571 Mdn1 protein_coding protein_coding MGP_C3HHeJ_T0064572.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30099198 30106355 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064573.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30113877 30122041 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064574.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30138141 30139273 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064575.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30148826 30221433 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064576.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30167205 30175781 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064577.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30170200 30172556 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064578.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30195015 30198437 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064579.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30195015 30196162 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0064580.1 MGP_C3HHeJ_G0027811.1 mouse_genomes_project 4 30207416 30210630 + Mdn1 protein_coding processed_transcript MGP_C3HHeJ_T0100597.1 MGP_C3HHeJ_G0038791.1 mouse_genomes_project 4 450652 450789 - Gm22781 snoRNA snoRNA MGP_C3HHeJ_T0014465.1 MGP_C3HHeJ_G0012569.1 mouse_genomes_project 4 84635576 84635979 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068600.1 MGP_C3HHeJ_G0028730.1 mouse_genomes_project 4 142074959 142093680 + MGP_C3HHeJ_P0068600 Sdhb protein_coding protein_coding MGP_C3HHeJ_T0068601.1 MGP_C3HHeJ_G0028730.1 mouse_genomes_project 4 142075157 142091283 + Sdhb protein_coding processed_transcript MGP_C3HHeJ_T0068602.1 MGP_C3HHeJ_G0028730.1 mouse_genomes_project 4 142075159 142088784 + Sdhb protein_coding processed_transcript MGP_C3HHeJ_T0067962.1 MGP_C3HHeJ_G0028579.1 mouse_genomes_project 4 133382745 133405216 - MGP_C3HHeJ_P0067962 Fam76a protein_coding protein_coding MGP_C3HHeJ_T0067963.1 MGP_C3HHeJ_G0028579.1 mouse_genomes_project 4 133395588 133403695 - MGP_C3HHeJ_P0067963 Fam76a protein_coding protein_coding MGP_C3HHeJ_T0100657.1 MGP_C3HHeJ_G0038851.1 mouse_genomes_project 4 109748198 109748329 + Gm22497 snoRNA snoRNA MGP_C3HHeJ_T0014277.1 MGP_C3HHeJ_G0012381.1 mouse_genomes_project 4 15955764 15956702 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099329.1 MGP_C3HHeJ_G0037523.1 mouse_genomes_project 4 14526291 14526394 - Gm23384 snRNA snRNA MGP_C3HHeJ_T0101209.1 MGP_C3HHeJ_G0039344.1 mouse_genomes_project 4 58613539 58614082 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101210.1 MGP_C3HHeJ_G0039345.1 mouse_genomes_project 4 86383990 86402499 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0064230.1 MGP_C3HHeJ_G0027730.1 mouse_genomes_project 4 803768 808739 - MGP_C3HHeJ_P0064230 Penk protein_coding protein_coding MGP_C3HHeJ_T0064231.1 MGP_C3HHeJ_G0027730.1 mouse_genomes_project 4 803769 809081 - MGP_C3HHeJ_P0064231 Penk protein_coding protein_coding MGP_C3HHeJ_T0068171.1 MGP_C3HHeJ_G0028626.1 mouse_genomes_project 4 135122398 135136419 + MGP_C3HHeJ_P0068171 Aunip protein_coding protein_coding MGP_C3HHeJ_T0014252.1 MGP_C3HHeJ_G0012356.1 mouse_genomes_project 4 10451203 10451939 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014445.1 MGP_C3HHeJ_G0012549.1 mouse_genomes_project 4 75866064 75868521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014525.1 MGP_C3HHeJ_G0012629.1 mouse_genomes_project 4 106849527 106849741 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065140.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42761986 42954293 - MGP_C3HHeJ_P0065140 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065141.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065141 Pax5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065142.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065142 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065143.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065143 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065144.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065144 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065145.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768374 42954224 - MGP_C3HHeJ_P0065145 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065146.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065146 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065147.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065147 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065148.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065148 Pax5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065149.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065149 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065150.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065150 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065151.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065151 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065152.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768726 42954214 - MGP_C3HHeJ_P0065152 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065153.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42768733 42889360 - MGP_C3HHeJ_P0065153 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065154.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42812468 42927645 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065155.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923269 42947812 - MGP_C3HHeJ_P0065155 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0065156.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065157.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065158.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - Pax5 protein_coding processed_transcript MGP_C3HHeJ_T0065159.1 MGP_C3HHeJ_G0027934.1 mouse_genomes_project 4 42923283 42947219 - MGP_C3HHeJ_P0065159 Pax5 protein_coding protein_coding MGP_C3HHeJ_T0067244.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122739692 122769447 - MGP_C3HHeJ_P0067244 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067245.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122739692 122769580 - MGP_C3HHeJ_P0067245 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067246.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122739692 122769592 - MGP_C3HHeJ_P0067246 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067247.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122744202 122746417 - Cap1 protein_coding processed_transcript MGP_C3HHeJ_T0067248.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122749116 122769501 - MGP_C3HHeJ_P0067248 Cap1 protein_coding protein_coding MGP_C3HHeJ_T0067249.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122752464 122769396 - Cap1 protein_coding processed_transcript MGP_C3HHeJ_T0067250.1 MGP_C3HHeJ_G0028425.1 mouse_genomes_project 4 122753555 122769400 - Cap1 protein_coding processed_transcript MGP_C3HHeJ_T0066904.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117573678 117577687 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0066905.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117575226 117577742 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0066906.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117575524 117581469 - MGP_C3HHeJ_P0066906 Btbd19 protein_coding protein_coding MGP_C3HHeJ_T0066907.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576000 117577716 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0066908.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576055 117576615 - Btbd19 protein_coding retained_intron MGP_C3HHeJ_T0066909.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576078 117577232 - Btbd19 protein_coding retained_intron MGP_C3HHeJ_T0066910.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576662 117581576 - MGP_C3HHeJ_P0066910 Btbd19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066911.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117576789 117581509 - MGP_C3HHeJ_P0066911 Btbd19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066912.1 MGP_C3HHeJ_G0028339.1 mouse_genomes_project 4 117579832 117581022 - Btbd19 protein_coding processed_transcript MGP_C3HHeJ_T0017821.1 MGP_C3HHeJ_G0015304.1 mouse_genomes_project 4 39498048 39503175 + Gm12404 processed_transcript processed_transcript MGP_C3HHeJ_T0067572.1 MGP_C3HHeJ_G0028504.1 mouse_genomes_project 4 129080754 129100930 + MGP_C3HHeJ_P0067572 Trim62 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067573.1 MGP_C3HHeJ_G0028504.1 mouse_genomes_project 4 129080762 129108617 + MGP_C3HHeJ_P0067573 Trim62 protein_coding protein_coding MGP_C3HHeJ_T0014517.1 MGP_C3HHeJ_G0012621.1 mouse_genomes_project 4 103954972 103955955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065327.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46828411 46869490 - MGP_C3HHeJ_P0065327 Tex10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065328.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46828411 46874025 - MGP_C3HHeJ_P0065328 Tex10 protein_coding protein_coding MGP_C3HHeJ_T0065329.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46828509 46873988 - MGP_C3HHeJ_P0065329 Tex10 protein_coding protein_coding MGP_C3HHeJ_T0065330.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46858768 46859903 - Tex10 protein_coding retained_intron MGP_C3HHeJ_T0065331.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46868272 46870562 - Tex10 protein_coding processed_transcript MGP_C3HHeJ_T0065332.1 MGP_C3HHeJ_G0027974.1 mouse_genomes_project 4 46869774 46873909 - Tex10 protein_coding retained_intron MGP_C3HHeJ_T0067538.1 MGP_C3HHeJ_G0028496.1 mouse_genomes_project 4 128087272 128130586 - MGP_C3HHeJ_P0067538 CK137956 protein_coding protein_coding MGP_C3HHeJ_T0065664.1 MGP_C3HHeJ_G0028067.1 mouse_genomes_project 4 62542001 62557305 - MGP_C3HHeJ_P0065664 1700018C11Rik protein_coding protein_coding MGP_C3HHeJ_T0065665.1 MGP_C3HHeJ_G0028067.1 mouse_genomes_project 4 62542001 62557317 - MGP_C3HHeJ_P0065665 1700018C11Rik protein_coding protein_coding MGP_C3HHeJ_T0066989.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118383460 118386371 - MGP_C3HHeJ_P0066989 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0066990.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118383466 118385031 - Atp6v0b protein_coding retained_intron MGP_C3HHeJ_T0066991.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118383581 118384937 - Atp6v0b protein_coding retained_intron MGP_C3HHeJ_T0066992.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118384300 118385773 - Atp6v0b protein_coding retained_intron MGP_C3HHeJ_T0066993.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118384367 118385695 - MGP_C3HHeJ_P0066993 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0066994.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118384771 118386422 - MGP_C3HHeJ_P0066994 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0066995.1 MGP_C3HHeJ_G0028354.1 mouse_genomes_project 4 118385417 118386468 - MGP_C3HHeJ_P0066995 Atp6v0b protein_coding protein_coding MGP_C3HHeJ_T0014505.1 MGP_C3HHeJ_G0012609.1 mouse_genomes_project 4 100280724 100281475 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007720.1 MGP_C3HHeJ_G0006303.1 mouse_genomes_project 4 8818532 8828102 - Gm11840 lincRNA lincRNA MGP_C3HHeJ_T0011486.1 MGP_C3HHeJ_G0009619.1 mouse_genomes_project 4 117358796 117359063 + Gm25435 misc_RNA misc_RNA MGP_C3HHeJ_T0067021.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118707797 118791448 - MGP_C3HHeJ_P0067021 Ptprf protein_coding protein_coding MGP_C3HHeJ_T0067022.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118707804 118791278 - MGP_C3HHeJ_P0067022 Ptprf protein_coding unknown_likely_coding MGP_C3HHeJ_T0067023.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118708572 118717263 - Ptprf protein_coding processed_transcript MGP_C3HHeJ_T0067024.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118708588 118736014 - MGP_C3HHeJ_P0067024 Ptprf protein_coding protein_coding MGP_C3HHeJ_T0067025.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118708593 118735585 - MGP_C3HHeJ_P0067025 Ptprf protein_coding protein_coding MGP_C3HHeJ_T0067026.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118709443 118710325 - Ptprf protein_coding processed_transcript MGP_C3HHeJ_T0067027.1 MGP_C3HHeJ_G0028360.1 mouse_genomes_project 4 118725713 118730682 - Ptprf protein_coding processed_transcript MGP_C3HHeJ_T0065933.1 MGP_C3HHeJ_G0028126.1 mouse_genomes_project 4 88437550 88438547 + MGP_C3HHeJ_P0065933 Ifna7 protein_coding protein_coding MGP_C3HHeJ_T0065870.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86158908 86191259 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0065871.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86159021 86202933 - MGP_C3HHeJ_P0065871 Plin2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065872.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86189035 86202976 - MGP_C3HHeJ_P0065872 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065873.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86189482 86191220 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0065874.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86189731 86191724 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0065875.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86192697 86198541 - MGP_C3HHeJ_P0065875 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065876.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86194509 86202476 - MGP_C3HHeJ_P0065876 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065877.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86194509 86202684 - MGP_C3HHeJ_P0065877 Plin2 protein_coding protein_coding MGP_C3HHeJ_T0065878.1 MGP_C3HHeJ_G0028109.1 mouse_genomes_project 4 86200580 86202902 - Plin2 protein_coding processed_transcript MGP_C3HHeJ_T0068991.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151516941 151519970 + MGP_C3HHeJ_P0068991 Lzic protein_coding protein_coding MGP_C3HHeJ_T0068992.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151516943 151519998 + MGP_C3HHeJ_P0068992 Lzic protein_coding protein_coding MGP_C3HHeJ_T0068993.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151516952 151517454 + Lzic protein_coding processed_transcript MGP_C3HHeJ_T0068994.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151517006 151530390 + MGP_C3HHeJ_P0068994 Lzic protein_coding protein_coding MGP_C3HHeJ_T0068995.1 MGP_C3HHeJ_G0028843.1 mouse_genomes_project 4 151517045 151517716 + Lzic protein_coding processed_transcript MGP_C3HHeJ_T0065406.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194762 52262967 + MGP_C3HHeJ_P0065406 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0065407.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194781 52215097 + Fsd1l protein_coding retained_intron MGP_C3HHeJ_T0065408.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194782 52211203 + Fsd1l protein_coding retained_intron MGP_C3HHeJ_T0065409.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194860 52257119 + MGP_C3HHeJ_P0065409 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0065410.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52194865 52257117 + MGP_C3HHeJ_P0065410 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0065411.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52195007 52222994 + MGP_C3HHeJ_P0065411 Fsd1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065412.1 MGP_C3HHeJ_G0028001.1 mouse_genomes_project 4 52206583 52262967 + MGP_C3HHeJ_P0065412 Fsd1l protein_coding protein_coding MGP_C3HHeJ_T0004422.1 MGP_C3HHeJ_G0003843.1 mouse_genomes_project 4 107461702 107464015 - Gm12869 antisense antisense MGP_C3HHeJ_T0066641.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126692 112138409 + Skint8 protein_coding processed_transcript MGP_C3HHeJ_T0066642.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126698 112142888 + MGP_C3HHeJ_P0066642 Skint8 protein_coding protein_coding MGP_C3HHeJ_T0066643.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126793 112141109 + Skint8 protein_coding retained_intron MGP_C3HHeJ_T0066644.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112126857 112153443 + MGP_C3HHeJ_P0066644 Skint8 protein_coding protein_coding MGP_C3HHeJ_T0066645.1 MGP_C3HHeJ_G0028277.1 mouse_genomes_project 4 112134800 112138557 + Skint8 protein_coding processed_transcript MGP_C3HHeJ_T0014349.1 MGP_C3HHeJ_G0012453.1 mouse_genomes_project 4 37680170 37680965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097908.1 MGP_C3HHeJ_G0036120.1 mouse_genomes_project 4 158026041 158028181 + pseudogene pseudogene MGP_C3HHeJ_T0099408.1 MGP_C3HHeJ_G0037602.1 mouse_genomes_project 4 150508507 150508611 + Gm24002 snRNA snRNA MGP_C3HHeJ_T0067552.1 MGP_C3HHeJ_G0028500.1 mouse_genomes_project 4 128792850 128796027 - MGP_C3HHeJ_P0067552 Tlr12 protein_coding protein_coding MGP_C3HHeJ_T0067553.1 MGP_C3HHeJ_G0028500.1 mouse_genomes_project 4 128794909 128796000 - Tlr12 protein_coding processed_transcript MGP_C3HHeJ_T0064542.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078030 26236319 + MGP_C3HHeJ_P0064542 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064543.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078030 26214933 + MGP_C3HHeJ_P0064543 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064544.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078051 26235635 + MGP_C3HHeJ_P0064544 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064545.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078149 26236319 + MGP_C3HHeJ_P0064545 Epha7 protein_coding protein_coding MGP_C3HHeJ_T0064546.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26078225 26138898 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0064547.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26080690 26086457 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0064548.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26136937 26211386 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0064549.1 MGP_C3HHeJ_G0027806.1 mouse_genomes_project 4 26137020 26214220 + Epha7 protein_coding processed_transcript MGP_C3HHeJ_T0068781.1 MGP_C3HHeJ_G0028785.1 mouse_genomes_project 4 145806173 145809398 + MGP_C3HHeJ_P0068781 protein_coding protein_coding MGP_C3HHeJ_T0065384.1 MGP_C3HHeJ_G0027993.1 mouse_genomes_project 4 51366288 51367248 + MGP_C3HHeJ_P0065384 Olfr275 protein_coding protein_coding MGP_C3HHeJ_T0014601.1 MGP_C3HHeJ_G0012705.1 mouse_genomes_project 4 127548862 127549282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014450.1 MGP_C3HHeJ_G0012554.1 mouse_genomes_project 4 77501724 77502666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014454.1 MGP_C3HHeJ_G0012558.1 mouse_genomes_project 4 79327794 79330539 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007806.1 MGP_C3HHeJ_G0006377.1 mouse_genomes_project 4 89869884 89874395 + Gm12629 lincRNA lincRNA MGP_C3HHeJ_T0066255.1 MGP_C3HHeJ_G0028206.1 mouse_genomes_project 4 104804138 104842525 + MGP_C3HHeJ_P0066255 C8b protein_coding protein_coding MGP_C3HHeJ_T0066256.1 MGP_C3HHeJ_G0028206.1 mouse_genomes_project 4 104804211 104842536 + MGP_C3HHeJ_P0066256 C8b protein_coding protein_coding MGP_C3HHeJ_T0066257.1 MGP_C3HHeJ_G0028206.1 mouse_genomes_project 4 104837572 104842905 + C8b protein_coding processed_transcript MGP_C3HHeJ_T0004459.1 MGP_C3HHeJ_G0003870.1 mouse_genomes_project 4 124901263 124905156 - 1700125G02Rik antisense antisense MGP_C3HHeJ_T0065217.1 MGP_C3HHeJ_G0027947.1 mouse_genomes_project 4 44109334 44127928 - MGP_C3HHeJ_P0065217 Igfbpl1 protein_coding protein_coding MGP_C3HHeJ_T0065218.1 MGP_C3HHeJ_G0027947.1 mouse_genomes_project 4 44112870 44116222 - Igfbpl1 protein_coding processed_transcript MGP_C3HHeJ_T0067271.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092145 123103602 + MGP_C3HHeJ_P0067271 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0067272.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092157 123100414 + MGP_C3HHeJ_P0067272 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0067273.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092417 123097699 + MGP_C3HHeJ_P0067273 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0067274.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092434 123093072 + Hpcal4 protein_coding processed_transcript MGP_C3HHeJ_T0067275.1 MGP_C3HHeJ_G0028433.1 mouse_genomes_project 4 123092647 123099645 + MGP_C3HHeJ_P0067275 Hpcal4 protein_coding protein_coding MGP_C3HHeJ_T0007819.1 MGP_C3HHeJ_G0006389.1 mouse_genomes_project 4 99957509 99971421 + Gm12702 lincRNA lincRNA MGP_C3HHeJ_T0004524.1 MGP_C3HHeJ_G0003920.1 mouse_genomes_project 4 151604156 151606327 - Gm13066 antisense antisense MGP_C3HHeJ_T0099327.1 MGP_C3HHeJ_G0037521.1 mouse_genomes_project 4 12264556 12264663 + Gm24317 snRNA snRNA MGP_C3HHeJ_T0014315.1 MGP_C3HHeJ_G0012419.1 mouse_genomes_project 4 25857855 25858119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017856.1 MGP_C3HHeJ_G0015329.1 mouse_genomes_project 4 115171457 115183921 + Foxd2os processed_transcript processed_transcript MGP_C3HHeJ_T0017857.1 MGP_C3HHeJ_G0015329.1 mouse_genomes_project 4 115171457 115184564 + Foxd2os processed_transcript processed_transcript MGP_C3HHeJ_T0017809.1 MGP_C3HHeJ_G0015297.1 mouse_genomes_project 4 15393998 15879237 + processed_transcript processed_transcript MGP_C3HHeJ_T0065696.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235052 71318626 - MGP_C3HHeJ_P0065696 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065697.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235715 71318564 - MGP_C3HHeJ_P0065697 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065698.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235717 71318561 - MGP_C3HHeJ_P0065698 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065699.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71235720 71316799 - Tle1 protein_coding retained_intron MGP_C3HHeJ_T0065700.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71236115 71317859 - MGP_C3HHeJ_P0065700 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065701.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71236130 71238647 - Tle1 protein_coding processed_transcript MGP_C3HHeJ_T0065702.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71256408 71259134 - MGP_C3HHeJ_P0065702 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065703.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71275380 71318569 - MGP_C3HHeJ_P0065703 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065704.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71276072 71317199 - MGP_C3HHeJ_P0065704 Tle1 protein_coding protein_coding MGP_C3HHeJ_T0065705.1 MGP_C3HHeJ_G0028080.1 mouse_genomes_project 4 71284982 71318600 - Tle1 protein_coding processed_transcript MGP_C3HHeJ_T0066862.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117219424 117233257 - MGP_C3HHeJ_P0066862 Toe1 protein_coding protein_coding MGP_C3HHeJ_T0066863.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117229709 117233349 - MGP_C3HHeJ_P0066863 Toe1 protein_coding protein_coding MGP_C3HHeJ_T0066864.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117229719 117230901 - Toe1 protein_coding processed_transcript MGP_C3HHeJ_T0066865.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117230382 117231314 - Toe1 protein_coding retained_intron MGP_C3HHeJ_T0066866.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117230490 117232232 - MGP_C3HHeJ_P0066866 Toe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066867.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117230984 117232309 - Toe1 protein_coding retained_intron MGP_C3HHeJ_T0066868.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117231419 117233315 - Toe1 protein_coding processed_transcript MGP_C3HHeJ_T0066869.1 MGP_C3HHeJ_G0028331.1 mouse_genomes_project 4 117231525 117233257 - Toe1 protein_coding retained_intron MGP_C3HHeJ_T0069548.1 MGP_C3HHeJ_G0028943.1 mouse_genomes_project 4 158340893 158344047 - MGP_C3HHeJ_P0069548 B3galt6 protein_coding protein_coding MGP_C3HHeJ_T0007945.1 MGP_C3HHeJ_G0006481.1 mouse_genomes_project 4 154916178 154919154 + Gm833 lincRNA lincRNA MGP_C3HHeJ_T0067234.1 MGP_C3HHeJ_G0028420.1 mouse_genomes_project 4 121736394 121776918 - MGP_C3HHeJ_P0067234 Rlf protein_coding protein_coding MGP_C3HHeJ_T0067235.1 MGP_C3HHeJ_G0028420.1 mouse_genomes_project 4 121736905 121808763 - MGP_C3HHeJ_P0067235 Rlf protein_coding protein_coding MGP_C3HHeJ_T0067236.1 MGP_C3HHeJ_G0028420.1 mouse_genomes_project 4 121762692 121776918 - MGP_C3HHeJ_P0067236 Rlf protein_coding protein_coding MGP_C3HHeJ_T0069065.1 MGP_C3HHeJ_G0028857.1 mouse_genomes_project 4 152736599 152763275 - MGP_C3HHeJ_P0069065 Slc45a1 protein_coding protein_coding MGP_C3HHeJ_T0069066.1 MGP_C3HHeJ_G0028857.1 mouse_genomes_project 4 152738065 152763198 - MGP_C3HHeJ_P0069066 Slc45a1 protein_coding protein_coding MGP_C3HHeJ_T0069067.1 MGP_C3HHeJ_G0028857.1 mouse_genomes_project 4 152754316 152755117 - Slc45a1 protein_coding retained_intron MGP_C3HHeJ_T0014478.1 MGP_C3HHeJ_G0012582.1 mouse_genomes_project 4 90259383 90260007 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010488.1 MGP_C3HHeJ_G0008621.1 mouse_genomes_project 4 8767478 8767542 + Gm25002 miRNA miRNA MGP_C3HHeJ_T0066817.1 MGP_C3HHeJ_G0028323.1 mouse_genomes_project 4 116956162 117004039 + MGP_C3HHeJ_P0066817 Gpbp1l1 protein_coding protein_coding MGP_C3HHeJ_T0066818.1 MGP_C3HHeJ_G0028323.1 mouse_genomes_project 4 116986956 116989873 + Gpbp1l1 protein_coding processed_transcript MGP_C3HHeJ_T0066819.1 MGP_C3HHeJ_G0028323.1 mouse_genomes_project 4 116989783 116998161 + Gpbp1l1 protein_coding processed_transcript MGP_C3HHeJ_T0010514.1 MGP_C3HHeJ_G0008647.1 mouse_genomes_project 4 80322531 80322627 + Gm27452 miRNA miRNA MGP_C3HHeJ_T0100669.1 MGP_C3HHeJ_G0038863.1 mouse_genomes_project 4 126975214 126975347 - Gm25604 snoRNA snoRNA MGP_C3HHeJ_T0067657.1 MGP_C3HHeJ_G0028522.1 mouse_genomes_project 4 129762760 129765164 + MGP_C3HHeJ_P0067657 Marcksl1 protein_coding protein_coding MGP_C3HHeJ_T0066269.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106377943 106500336 + MGP_C3HHeJ_P0066269 Usp24 protein_coding protein_coding MGP_C3HHeJ_T0066270.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106377950 106422585 + Usp24 protein_coding retained_intron MGP_C3HHeJ_T0066271.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106377964 106500341 + MGP_C3HHeJ_P0066271 Usp24 protein_coding protein_coding MGP_C3HHeJ_T0066272.1 MGP_C3HHeJ_G0028213.1 mouse_genomes_project 4 106487522 106489874 + Usp24 protein_coding processed_transcript MGP_C3HHeJ_T0066794.1 MGP_C3HHeJ_G0028319.1 mouse_genomes_project 4 116615376 116657024 + MGP_C3HHeJ_P0066794 Pik3r3 protein_coding protein_coding MGP_C3HHeJ_T0066795.1 MGP_C3HHeJ_G0028319.1 mouse_genomes_project 4 116615419 116696591 + MGP_C3HHeJ_P0066795 Pik3r3 protein_coding protein_coding MGP_C3HHeJ_T0066796.1 MGP_C3HHeJ_G0028319.1 mouse_genomes_project 4 116615454 116693376 + MGP_C3HHeJ_P0066796 Pik3r3 protein_coding protein_coding MGP_C3HHeJ_T0007752.1 MGP_C3HHeJ_G0006334.1 mouse_genomes_project 4 43977869 44019444 + Gm829 lincRNA lincRNA MGP_C3HHeJ_T0007753.1 MGP_C3HHeJ_G0006334.1 mouse_genomes_project 4 43977869 43987920 + Gm829 lincRNA lincRNA MGP_C3HHeJ_T0014651.1 MGP_C3HHeJ_G0012755.1 mouse_genomes_project 4 151108533 151108853 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068757.1 MGP_C3HHeJ_G0028768.1 mouse_genomes_project 4 144700386 144714356 - MGP_C3HHeJ_P0068757 Oog4 protein_coding protein_coding MGP_C3HHeJ_T0068758.1 MGP_C3HHeJ_G0028768.1 mouse_genomes_project 4 144700387 144714336 - MGP_C3HHeJ_P0068758 Oog4 protein_coding protein_coding MGP_C3HHeJ_T0004513.1 MGP_C3HHeJ_G0003912.1 mouse_genomes_project 4 150555872 150557155 - Gm13209 antisense antisense MGP_C3HHeJ_T0069474.1 MGP_C3HHeJ_G0028928.1 mouse_genomes_project 4 158102223 158110101 - MGP_C3HHeJ_P0069474 Vwa1 protein_coding protein_coding MGP_C3HHeJ_T0101985.1 MGP_C3HHeJ_G0039950.1 mouse_genomes_project 4 47763516 47781258 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100632.1 MGP_C3HHeJ_G0038826.1 mouse_genomes_project 4 55522700 55522833 - Gm25053 snoRNA snoRNA MGP_C3HHeJ_T0064871.1 MGP_C3HHeJ_G0027889.1 mouse_genomes_project 4 40881225 40881891 - MGP_C3HHeJ_P0064871 protein_coding protein_coding MGP_C3HHeJ_T0067063.1 MGP_C3HHeJ_G0028369.1 mouse_genomes_project 4 119063209 119131628 - MGP_C3HHeJ_P0067063 Cfap57 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069515.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209281 158228429 + Cpsf3l protein_coding processed_transcript MGP_C3HHeJ_T0069516.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209281 158229043 + MGP_C3HHeJ_P0069516 Cpsf3l protein_coding protein_coding MGP_C3HHeJ_T0069517.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209281 158228415 + MGP_C3HHeJ_P0069517 Cpsf3l protein_coding protein_coding MGP_C3HHeJ_T0069518.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209302 158212057 + Cpsf3l protein_coding retained_intron MGP_C3HHeJ_T0069519.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158209350 158226655 + MGP_C3HHeJ_P0069519 Cpsf3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069520.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158227514 158228217 + Cpsf3l protein_coding retained_intron MGP_C3HHeJ_T0069522.1 MGP_C3HHeJ_G0028938.1 mouse_genomes_project 4 158227852 158228463 + Cpsf3l protein_coding retained_intron MGP_C3HHeJ_T0004434.1 MGP_C3HHeJ_G0003849.1 mouse_genomes_project 4 115075805 115164458 - 9130410C08Rik antisense antisense MGP_C3HHeJ_T0001375.1 MGP_C3HHeJ_G0001306.1 mouse_genomes_project 4 39684391 39684869 - TEC TEC MGP_C3HHeJ_T0067104.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119732930 119762399 - AU022252 protein_coding processed_transcript MGP_C3HHeJ_T0067106.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119749530 119762403 - MGP_C3HHeJ_P0067106 AU022252 protein_coding protein_coding MGP_C3HHeJ_T0067107.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119755934 119762369 - AU022252 protein_coding processed_transcript MGP_C3HHeJ_T0067108.1 MGP_C3HHeJ_G0028389.1 mouse_genomes_project 4 119756024 119762376 - AU022252 protein_coding processed_transcript MGP_C3HHeJ_T0101993.1 MGP_C3HHeJ_G0039958.1 mouse_genomes_project 4 88233903 88235295 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066700.1 MGP_C3HHeJ_G0028300.1 mouse_genomes_project 4 115908507 115968702 + MGP_C3HHeJ_P0066700 protein_coding protein_coding MGP_C3HHeJ_T0066702.1 MGP_C3HHeJ_G0028300.1 mouse_genomes_project 4 115908531 115968699 + MGP_C3HHeJ_P0066702 protein_coding protein_coding MGP_C3HHeJ_T0014230.1 MGP_C3HHeJ_G0012334.1 mouse_genomes_project 4 2916881 2917756 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068118.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134793107 134812070 - MGP_C3HHeJ_P0068118 Catsper4 protein_coding protein_coding MGP_C3HHeJ_T0068119.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134793107 134812070 - MGP_C3HHeJ_P0068119 Catsper4 protein_coding protein_coding MGP_C3HHeJ_T0068120.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134809178 134812059 - MGP_C3HHeJ_P0068120 Catsper4 protein_coding protein_coding MGP_C3HHeJ_T0068121.1 MGP_C3HHeJ_G0028612.1 mouse_genomes_project 4 134811184 134812037 - Catsper4 protein_coding processed_transcript MGP_C3HHeJ_T0068181.1 MGP_C3HHeJ_G0028629.1 mouse_genomes_project 4 135173825 135320166 - MGP_C3HHeJ_P0068181 Man1c1 protein_coding protein_coding MGP_C3HHeJ_T0068182.1 MGP_C3HHeJ_G0028629.1 mouse_genomes_project 4 135173825 135320166 - MGP_C3HHeJ_P0068182 Man1c1 protein_coding protein_coding MGP_C3HHeJ_T0068183.1 MGP_C3HHeJ_G0028629.1 mouse_genomes_project 4 135180017 135319643 - Man1c1 protein_coding retained_intron MGP_C3HHeJ_T0066132.1 MGP_C3HHeJ_G0028179.1 mouse_genomes_project 4 99840305 99900134 + MGP_C3HHeJ_P0066132 Pgm2 protein_coding protein_coding MGP_C3HHeJ_T0066133.1 MGP_C3HHeJ_G0028179.1 mouse_genomes_project 4 99867871 99900134 + MGP_C3HHeJ_P0066133 Pgm2 protein_coding protein_coding MGP_C3HHeJ_T0011487.1 MGP_C3HHeJ_G0009620.1 mouse_genomes_project 4 121727733 121728052 + Gm22982 misc_RNA misc_RNA MGP_C3HHeJ_T0011485.1 MGP_C3HHeJ_G0009618.1 mouse_genomes_project 4 117145149 117145240 + Gm27688 misc_RNA misc_RNA MGP_C3HHeJ_T0067840.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132236156 132261209 + MGP_C3HHeJ_P0067840 Mecr protein_coding protein_coding MGP_C3HHeJ_T0067841.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132236179 132254281 + MGP_C3HHeJ_P0067841 Mecr protein_coding protein_coding MGP_C3HHeJ_T0067842.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132236191 132236694 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067843.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132247103 132254416 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067844.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132247162 132251589 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067845.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132251154 132258755 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067846.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132251180 132261209 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067847.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132253650 132258497 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067848.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132255127 132261024 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0067849.1 MGP_C3HHeJ_G0028554.1 mouse_genomes_project 4 132258200 132261199 + Mecr protein_coding processed_transcript MGP_C3HHeJ_T0014639.1 MGP_C3HHeJ_G0012743.1 mouse_genomes_project 4 144648975 144649663 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099372.1 MGP_C3HHeJ_G0037566.1 mouse_genomes_project 4 108168391 108168495 - Gm23354 snRNA snRNA MGP_C3HHeJ_T0004444.1 MGP_C3HHeJ_G0003858.1 mouse_genomes_project 4 118475752 118494675 + 9530034E10Rik antisense antisense MGP_C3HHeJ_T0014626.1 MGP_C3HHeJ_G0012730.1 mouse_genomes_project 4 136813498 136813958 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066694.1 MGP_C3HHeJ_G0028296.1 mouse_genomes_project 4 115744551 115753426 + MGP_C3HHeJ_P0066694 Cyp4a30b protein_coding protein_coding MGP_C3HHeJ_T0068472.1 MGP_C3HHeJ_G0028695.1 mouse_genomes_project 4 139380945 139389232 + MGP_C3HHeJ_P0068472 Camk2n1 protein_coding protein_coding MGP_C3HHeJ_T0065745.1 MGP_C3HHeJ_G0028089.1 mouse_genomes_project 4 79330546 79331047 - MGP_C3HHeJ_P0065745 protein_coding protein_coding MGP_C3HHeJ_T0004519.1 MGP_C3HHeJ_G0003916.1 mouse_genomes_project 4 151366182 151367451 + Ube4bos3 antisense antisense MGP_C3HHeJ_T0064414.1 MGP_C3HHeJ_G0027768.1 mouse_genomes_project 4 11743049 11799102 + MGP_C3HHeJ_P0064414 Tmem55a protein_coding protein_coding MGP_C3HHeJ_T0099386.1 MGP_C3HHeJ_G0037580.1 mouse_genomes_project 4 121678115 121678279 - Gm23540 snRNA snRNA MGP_C3HHeJ_T0100662.1 MGP_C3HHeJ_G0038856.1 mouse_genomes_project 4 118667705 118667809 + Gm23382 snoRNA snoRNA MGP_C3HHeJ_T0065073.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848095 41850317 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065074.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848095 41850312 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065075.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848096 41848825 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065076.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848097 41848596 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065077.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848097 41850335 - MGP_C3HHeJ_P0065077 Hint2 protein_coding protein_coding MGP_C3HHeJ_T0065078.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848098 41850317 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0065079.1 MGP_C3HHeJ_G0027917.1 mouse_genomes_project 4 41848542 41849612 - Hint2 protein_coding processed_transcript MGP_C3HHeJ_T0066302.1 MGP_C3HHeJ_G0028222.1 mouse_genomes_project 4 106805337 106821727 + MGP_C3HHeJ_P0066302 Fam151a protein_coding protein_coding MGP_C3HHeJ_T0100677.1 MGP_C3HHeJ_G0038871.1 mouse_genomes_project 4 132741793 132741922 + Snora44 snoRNA snoRNA MGP_C3HHeJ_T0011461.1 MGP_C3HHeJ_G0009594.1 mouse_genomes_project 4 15704545 15704876 - Gm24419 misc_RNA misc_RNA MGP_C3HHeJ_T0064885.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41113731 41114562 + Dnajb5 protein_coding processed_transcript MGP_C3HHeJ_T0064886.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41114168 41122591 + Dnajb5 protein_coding retained_intron MGP_C3HHeJ_T0064887.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41114257 41117120 + Dnajb5 protein_coding processed_transcript MGP_C3HHeJ_T0064888.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41114579 41122597 + MGP_C3HHeJ_P0064888 Dnajb5 protein_coding protein_coding MGP_C3HHeJ_T0064889.1 MGP_C3HHeJ_G0027892.1 mouse_genomes_project 4 41116911 41122582 + MGP_C3HHeJ_P0064889 Dnajb5 protein_coding protein_coding MGP_C3HHeJ_T0017814.1 MGP_C3HHeJ_G0015300.1 mouse_genomes_project 4 30483854 30488032 - 4933421O10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011470.1 MGP_C3HHeJ_G0009603.1 mouse_genomes_project 4 50057433 50057702 + Gm22563 misc_RNA misc_RNA MGP_C3HHeJ_T0099402.1 MGP_C3HHeJ_G0037596.1 mouse_genomes_project 4 138140392 138140481 + Gm25772 snRNA snRNA MGP_C3HHeJ_T0014371.1 MGP_C3HHeJ_G0012475.1 mouse_genomes_project 4 45823551 45824873 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064383.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002622 9011696 + protein_coding processed_transcript MGP_C3HHeJ_T0064384.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002625 9014228 + MGP_C3HHeJ_P0064384 protein_coding protein_coding MGP_C3HHeJ_T0064385.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002643 9012036 + protein_coding processed_transcript MGP_C3HHeJ_T0064386.1 MGP_C3HHeJ_G0027761.1 mouse_genomes_project 4 9002675 9014228 + MGP_C3HHeJ_P0064386 protein_coding protein_coding MGP_C3HHeJ_T0068838.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149836830 149863683 - MGP_C3HHeJ_P0068838 Plod1 protein_coding protein_coding MGP_C3HHeJ_T0068839.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149842660 149847952 - MGP_C3HHeJ_P0068839 Plod1 protein_coding protein_coding MGP_C3HHeJ_T0068840.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149849308 149863658 - Plod1 protein_coding retained_intron MGP_C3HHeJ_T0068841.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149849695 149850588 - Plod1 protein_coding retained_intron MGP_C3HHeJ_T0068842.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149854534 149863641 - MGP_C3HHeJ_P0068842 Plod1 protein_coding protein_coding MGP_C3HHeJ_T0068843.1 MGP_C3HHeJ_G0028812.1 mouse_genomes_project 4 149858578 149863624 - Plod1 protein_coding processed_transcript MGP_C3HHeJ_T0064863.1 MGP_C3HHeJ_G0027883.1 mouse_genomes_project 4 40344386 40345520 + MGP_C3HHeJ_P0064863 protein_coding protein_coding MGP_C3HHeJ_T0069478.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158138924 158139695 + Mrpl20 protein_coding processed_transcript MGP_C3HHeJ_T0069479.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139573 158145119 + MGP_C3HHeJ_P0069479 Mrpl20 protein_coding protein_coding MGP_C3HHeJ_T0069480.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139699 158145086 + MGP_C3HHeJ_P0069480 Mrpl20 protein_coding protein_coding MGP_C3HHeJ_T0069481.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139702 158146263 + MGP_C3HHeJ_P0069481 Mrpl20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069482.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139704 158143446 + MGP_C3HHeJ_P0069482 Mrpl20 protein_coding protein_coding MGP_C3HHeJ_T0069483.1 MGP_C3HHeJ_G0028931.1 mouse_genomes_project 4 158139811 158145082 + Mrpl20 protein_coding processed_transcript MGP_C3HHeJ_T0068642.1 MGP_C3HHeJ_G0028738.1 mouse_genomes_project 4 142333649 142339831 + MGP_C3HHeJ_P0068642 Rsg1 protein_coding protein_coding MGP_C3HHeJ_T0068643.1 MGP_C3HHeJ_G0028738.1 mouse_genomes_project 4 142334138 142338357 + Rsg1 protein_coding processed_transcript MGP_C3HHeJ_T0068644.1 MGP_C3HHeJ_G0028738.1 mouse_genomes_project 4 142338328 142346518 + Rsg1 protein_coding processed_transcript MGP_C3HHeJ_T0067379.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107397 125135969 + MGP_C3HHeJ_P0067379 Meaf6 protein_coding protein_coding MGP_C3HHeJ_T0067380.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107414 125132634 + MGP_C3HHeJ_P0067380 Meaf6 protein_coding protein_coding MGP_C3HHeJ_T0067381.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107427 125132459 + MGP_C3HHeJ_P0067381 Meaf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067382.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107428 125112424 + Meaf6 protein_coding processed_transcript MGP_C3HHeJ_T0067383.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125107524 125132197 + MGP_C3HHeJ_P0067383 Meaf6 protein_coding protein_coding MGP_C3HHeJ_T0067384.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125108451 125132202 + MGP_C3HHeJ_P0067384 Meaf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067385.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125112161 125126348 + Meaf6 protein_coding processed_transcript MGP_C3HHeJ_T0067386.1 MGP_C3HHeJ_G0028460.1 mouse_genomes_project 4 125130728 125132173 + Meaf6 protein_coding retained_intron MGP_C3HHeJ_T0004540.1 MGP_C3HHeJ_G0003933.1 mouse_genomes_project 4 157339693 157343071 + Gm10564 antisense antisense MGP_C3HHeJ_T0014330.1 MGP_C3HHeJ_G0012434.1 mouse_genomes_project 4 30510728 30511175 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004538.1 MGP_C3HHeJ_G0003932.1 mouse_genomes_project 4 157162057 157167389 - Gm13112 antisense antisense MGP_C3HHeJ_T0004539.1 MGP_C3HHeJ_G0003932.1 mouse_genomes_project 4 157162634 157169912 - Gm13112 antisense antisense MGP_C3HHeJ_T0067171.1 MGP_C3HHeJ_G0028401.1 mouse_genomes_project 4 120189643 120191422 + MGP_C3HHeJ_P0067171 Guca2a protein_coding protein_coding MGP_C3HHeJ_T0014240.1 MGP_C3HHeJ_G0012344.1 mouse_genomes_project 4 7184532 7185478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065475.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56232611 56569841 + MGP_C3HHeJ_P0065475 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065477.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56232762 56531521 + MGP_C3HHeJ_P0065477 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065478.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56303557 56567577 + MGP_C3HHeJ_P0065478 protein_coding protein_coding MGP_C3HHeJ_T0065484.1 MGP_C3HHeJ_G0028019.1 mouse_genomes_project 4 56522203 56569843 + MGP_C3HHeJ_P0065484 protein_coding protein_coding MGP_C3HHeJ_T0066682.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362738 115367923 + MGP_C3HHeJ_P0066682 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066683.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362738 115367923 + MGP_C3HHeJ_P0066683 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066684.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362753 115367928 + MGP_C3HHeJ_P0066684 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066685.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115362753 115367928 + MGP_C3HHeJ_P0066685 Pdzk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0066686.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115363073 115365371 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0066687.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115364211 115367893 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0066688.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115364278 115365256 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0066689.1 MGP_C3HHeJ_G0028291.1 mouse_genomes_project 4 115364956 115367893 + Pdzk1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0065302.1 MGP_C3HHeJ_G0027968.1 mouse_genomes_project 4 45836648 45842375 - Alg2 protein_coding processed_transcript MGP_C3HHeJ_T0065303.1 MGP_C3HHeJ_G0027968.1 mouse_genomes_project 4 45841437 45845964 - MGP_C3HHeJ_P0065303 Alg2 protein_coding protein_coding MGP_C3HHeJ_T0065304.1 MGP_C3HHeJ_G0027968.1 mouse_genomes_project 4 45843498 45845608 - MGP_C3HHeJ_P0065304 Alg2 protein_coding protein_coding MGP_C3HHeJ_T0007735.1 MGP_C3HHeJ_G0006317.1 mouse_genomes_project 4 26341837 26363234 + Gm11917 lincRNA lincRNA MGP_C3HHeJ_T0068010.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133880895 133935945 + MGP_C3HHeJ_P0068010 Slc9a1 protein_coding protein_coding MGP_C3HHeJ_T0068011.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133881833 133924538 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0068012.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133928710 133932821 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0068013.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133931752 133932437 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0068014.1 MGP_C3HHeJ_G0028589.1 mouse_genomes_project 4 133932243 133934586 + Slc9a1 protein_coding processed_transcript MGP_C3HHeJ_T0014244.1 MGP_C3HHeJ_G0012348.1 mouse_genomes_project 4 7895985 7896334 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014272.1 MGP_C3HHeJ_G0012376.1 mouse_genomes_project 4 14993046 14994056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099388.1 MGP_C3HHeJ_G0037582.1 mouse_genomes_project 4 124701586 124701689 - Gm24480 snRNA snRNA MGP_C3HHeJ_T0068184.1 MGP_C3HHeJ_G0028630.1 mouse_genomes_project 4 135358646 135386406 - MGP_C3HHeJ_P0068184 Ldlrap1 protein_coding protein_coding MGP_C3HHeJ_T0068185.1 MGP_C3HHeJ_G0028630.1 mouse_genomes_project 4 135363665 135367197 - Ldlrap1 protein_coding retained_intron MGP_C3HHeJ_T0068186.1 MGP_C3HHeJ_G0028630.1 mouse_genomes_project 4 135366505 135367939 - Ldlrap1 protein_coding retained_intron MGP_C3HHeJ_T0007893.1 MGP_C3HHeJ_G0006440.1 mouse_genomes_project 4 131860115 131878450 + Gm831 lincRNA lincRNA MGP_C3HHeJ_T0014462.1 MGP_C3HHeJ_G0012566.1 mouse_genomes_project 4 83850781 83851088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066194.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102742454 102870908 + Sgip1 protein_coding retained_intron MGP_C3HHeJ_T0066195.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759215 102979829 + MGP_C3HHeJ_P0066195 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066196.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759408 102863803 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066197.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759425 102979710 + MGP_C3HHeJ_P0066197 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066198.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759432 102869891 + MGP_C3HHeJ_P0066198 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066199.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759435 102861240 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066200.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759443 102979024 + MGP_C3HHeJ_P0066200 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066201.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759455 102870204 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066202.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759545 102920463 + MGP_C3HHeJ_P0066202 Sgip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066203.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102759605 102981466 + MGP_C3HHeJ_P0066203 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066204.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102870645 102978450 + MGP_C3HHeJ_P0066204 Sgip1 protein_coding protein_coding MGP_C3HHeJ_T0066205.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102922638 102930101 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066206.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102928551 102930274 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066207.1 MGP_C3HHeJ_G0028197.1 mouse_genomes_project 4 102970310 102975861 + Sgip1 protein_coding processed_transcript MGP_C3HHeJ_T0066114.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653360 99668454 + Alg6 protein_coding retained_intron MGP_C3HHeJ_T0066115.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653361 99694908 + Alg6 protein_coding retained_intron MGP_C3HHeJ_T0066116.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653361 99696057 + MGP_C3HHeJ_P0066116 Alg6 protein_coding protein_coding MGP_C3HHeJ_T0066117.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653372 99679048 + Alg6 protein_coding processed_transcript MGP_C3HHeJ_T0066118.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653372 99685673 + MGP_C3HHeJ_P0066118 Alg6 protein_coding protein_coding MGP_C3HHeJ_T0066119.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99653372 99685482 + MGP_C3HHeJ_P0066119 Alg6 protein_coding protein_coding MGP_C3HHeJ_T0066120.1 MGP_C3HHeJ_G0028176.1 mouse_genomes_project 4 99656811 99672137 + Alg6 protein_coding retained_intron MGP_C3HHeJ_T0069397.1 MGP_C3HHeJ_G0028914.1 mouse_genomes_project 4 157701067 157713872 - Gabrd protein_coding processed_transcript MGP_C3HHeJ_T0069398.1 MGP_C3HHeJ_G0028914.1 mouse_genomes_project 4 157701067 157713937 - MGP_C3HHeJ_P0069398 Gabrd protein_coding protein_coding MGP_C3HHeJ_T0069399.1 MGP_C3HHeJ_G0028914.1 mouse_genomes_project 4 157704652 157713861 - Gabrd protein_coding processed_transcript MGP_C3HHeJ_T0010521.1 MGP_C3HHeJ_G0008654.1 mouse_genomes_project 4 98503022 98503118 + Gm26154 miRNA miRNA MGP_C3HHeJ_T0098130.1 MGP_C3HHeJ_G0036342.1 mouse_genomes_project 4 47187067 47187179 - Gm24573 rRNA rRNA MGP_C3HHeJ_T0066212.1 MGP_C3HHeJ_G0028199.1 mouse_genomes_project 4 103028635 103031162 - MGP_C3HHeJ_P0066212 Insl5 protein_coding protein_coding MGP_C3HHeJ_T0066213.1 MGP_C3HHeJ_G0028199.1 mouse_genomes_project 4 103028877 103031267 - MGP_C3HHeJ_P0066213 Insl5 protein_coding protein_coding MGP_C3HHeJ_T0064387.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9023602 9042169 - MGP_C3HHeJ_P0064387 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064388.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9023916 9042169 - MGP_C3HHeJ_P0064388 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064389.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9023917 9042149 - MGP_C3HHeJ_P0064389 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064390.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9024050 9031288 - Fam92a protein_coding processed_transcript MGP_C3HHeJ_T0064391.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9025874 9041322 - MGP_C3HHeJ_P0064391 Fam92a protein_coding protein_coding MGP_C3HHeJ_T0064392.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9034274 9042025 - MGP_C3HHeJ_P0064392 Fam92a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064393.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9035496 9042149 - Fam92a protein_coding retained_intron MGP_C3HHeJ_T0064394.1 MGP_C3HHeJ_G0027762.1 mouse_genomes_project 4 9035763 9041888 - Fam92a protein_coding retained_intron MGP_C3HHeJ_T0014577.1 MGP_C3HHeJ_G0012681.1 mouse_genomes_project 4 121822915 121823288 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099352.1 MGP_C3HHeJ_G0037546.1 mouse_genomes_project 4 56549512 56549619 - Gm26138 snRNA snRNA MGP_C3HHeJ_T0066165.1 MGP_C3HHeJ_G0028188.1 mouse_genomes_project 4 101578271 101594734 + MGP_C3HHeJ_P0066165 Leprot protein_coding protein_coding MGP_C3HHeJ_T0014515.1 MGP_C3HHeJ_G0012619.1 mouse_genomes_project 4 103551568 103552922 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067486.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865418 126902560 + MGP_C3HHeJ_P0067486 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067487.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865427 126902671 + MGP_C3HHeJ_P0067487 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067488.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865429 126984315 + MGP_C3HHeJ_P0067488 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067489.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865644 126968583 + MGP_C3HHeJ_P0067489 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067490.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865644 126984315 + MGP_C3HHeJ_P0067490 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067491.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865668 126902574 + MGP_C3HHeJ_P0067491 AU040320 protein_coding protein_coding MGP_C3HHeJ_T0067492.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865688 126898220 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067493.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126865700 126866608 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067494.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126929142 126945406 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067495.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126948588 126953876 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0067496.1 MGP_C3HHeJ_G0028484.1 mouse_genomes_project 4 126964576 126967798 + AU040320 protein_coding processed_transcript MGP_C3HHeJ_T0010483.1 MGP_C3HHeJ_G0008616.1 mouse_genomes_project 4 164222 164324 + Mir3471-2 miRNA miRNA MGP_C3HHeJ_T0004446.1 MGP_C3HHeJ_G0003860.1 mouse_genomes_project 4 119472231 119472877 - Gm12863 antisense antisense MGP_C3HHeJ_T0014281.1 MGP_C3HHeJ_G0012385.1 mouse_genomes_project 4 17893796 17894028 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007874.1 MGP_C3HHeJ_G0006427.1 mouse_genomes_project 4 127971301 127972837 - 1700112K13Rik lincRNA lincRNA MGP_C3HHeJ_T0068973.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151359186 151462195 - MGP_C3HHeJ_P0068973 Ube4b protein_coding protein_coding MGP_C3HHeJ_T0068974.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151359192 151366668 - MGP_C3HHeJ_P0068974 Ube4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068975.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151360266 151362605 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068976.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151360443 151461351 - MGP_C3HHeJ_P0068976 Ube4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068977.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151360443 151461351 - MGP_C3HHeJ_P0068977 Ube4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068978.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151366755 151367662 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068979.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151384261 151385242 - Ube4b protein_coding retained_intron MGP_C3HHeJ_T0068980.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151399191 151462077 - Ube4b protein_coding retained_intron MGP_C3HHeJ_T0068981.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151420529 151462046 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068982.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151422513 151423103 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0068983.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151434311 151461662 - Ube4b protein_coding retained_intron MGP_C3HHeJ_T0068984.1 MGP_C3HHeJ_G0028840.1 mouse_genomes_project 4 151434323 151435196 - Ube4b protein_coding processed_transcript MGP_C3HHeJ_T0066478.1 MGP_C3HHeJ_G0028249.1 mouse_genomes_project 4 108511349 108526882 - MGP_C3HHeJ_P0066478 Fam159a protein_coding protein_coding MGP_C3HHeJ_T0001371.1 MGP_C3HHeJ_G0001302.1 mouse_genomes_project 4 5125442 5135214 - TEC TEC MGP_C3HHeJ_T0007709.1 MGP_C3HHeJ_G0006297.1 mouse_genomes_project 4 2282083 2291905 + 4930423M02Rik lincRNA lincRNA MGP_C3HHeJ_T0007710.1 MGP_C3HHeJ_G0006297.1 mouse_genomes_project 4 2282091 2291378 + 4930423M02Rik lincRNA lincRNA MGP_C3HHeJ_T0014501.1 MGP_C3HHeJ_G0012605.1 mouse_genomes_project 4 99333908 99334122 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014459.1 MGP_C3HHeJ_G0012563.1 mouse_genomes_project 4 82493354 82493555 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067333.1 MGP_C3HHeJ_G0028448.1 mouse_genomes_project 4 124718095 124735740 + MGP_C3HHeJ_P0067333 Sf3a3 protein_coding protein_coding MGP_C3HHeJ_T0067334.1 MGP_C3HHeJ_G0028448.1 mouse_genomes_project 4 124718202 124722043 + Sf3a3 protein_coding processed_transcript MGP_C3HHeJ_T0067335.1 MGP_C3HHeJ_G0028448.1 mouse_genomes_project 4 124725048 124726698 + Sf3a3 protein_coding processed_transcript MGP_C3HHeJ_T0066725.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214535 116255036 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066726.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214535 116255036 + MGP_C3HHeJ_P0066726 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066727.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214558 116239932 + MGP_C3HHeJ_P0066727 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066728.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214560 116249656 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066729.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214570 116223919 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066730.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214570 116255036 + MGP_C3HHeJ_P0066730 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066731.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214572 116241899 + MGP_C3HHeJ_P0066731 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066732.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214577 116239969 + MGP_C3HHeJ_P0066732 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066733.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214581 116232439 + MGP_C3HHeJ_P0066733 Mknk1 protein_coding protein_coding MGP_C3HHeJ_T0066734.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116214597 116238628 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066735.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116232373 116254450 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066736.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116232447 116252396 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066737.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116241633 116242694 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066738.1 MGP_C3HHeJ_G0028306.1 mouse_genomes_project 4 116250556 116252838 + Mknk1 protein_coding processed_transcript MGP_C3HHeJ_T0066963.1 MGP_C3HHeJ_G0028349.1 mouse_genomes_project 4 118217819 118220280 + MGP_C3HHeJ_P0066963 Gm12845 protein_coding protein_coding MGP_C3HHeJ_T0007926.1 MGP_C3HHeJ_G0006462.1 mouse_genomes_project 4 141460122 141465067 + Gm13016 lincRNA lincRNA MGP_C3HHeJ_T0069037.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152184881 152211090 + MGP_C3HHeJ_P0069037 Slc2a5 protein_coding protein_coding MGP_C3HHeJ_T0069038.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152195545 152206974 + Slc2a5 protein_coding processed_transcript MGP_C3HHeJ_T0069039.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152206286 152209184 + Slc2a5 protein_coding retained_intron MGP_C3HHeJ_T0069040.1 MGP_C3HHeJ_G0028852.1 mouse_genomes_project 4 152206487 152209769 + Slc2a5 protein_coding processed_transcript MGP_C3HHeJ_T0069462.1 MGP_C3HHeJ_G0028926.1 mouse_genomes_project 4 158067484 158072871 + MGP_C3HHeJ_P0069462 Tmem240 protein_coding protein_coding MGP_C3HHeJ_T0069463.1 MGP_C3HHeJ_G0028926.1 mouse_genomes_project 4 158067488 158073293 + Tmem240 protein_coding retained_intron MGP_C3HHeJ_T0069464.1 MGP_C3HHeJ_G0028926.1 mouse_genomes_project 4 158067558 158073293 + MGP_C3HHeJ_P0069464 Tmem240 protein_coding protein_coding MGP_C3HHeJ_T0017850.1 MGP_C3HHeJ_G0015326.1 mouse_genomes_project 4 108748548 108779482 - Gm12743 processed_transcript processed_transcript MGP_C3HHeJ_T0102009.1 MGP_C3HHeJ_G0039974.1 mouse_genomes_project 4 115858936 115860279 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014595.1 MGP_C3HHeJ_G0012699.1 mouse_genomes_project 4 126677838 126678139 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011488.1 MGP_C3HHeJ_G0009621.1 mouse_genomes_project 4 123433017 123433123 + Gm23548 misc_RNA misc_RNA MGP_C3HHeJ_T0000315.1 MGP_C3HHeJ_G0000265.1 mouse_genomes_project 4 79333838 79333901 + mt-Tt Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0066877.1 MGP_C3HHeJ_G0028333.1 mouse_genomes_project 4 117250812 117252616 - MGP_C3HHeJ_P0066877 Hpdl protein_coding protein_coding MGP_C3HHeJ_T0068400.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138548749 138600134 + Rap1gap protein_coding processed_transcript MGP_C3HHeJ_T0068401.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138548777 138595450 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068402.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138564785 138599354 + MGP_C3HHeJ_P0068402 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068403.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138564785 138602793 + MGP_C3HHeJ_P0068403 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068404.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138564785 138614745 + MGP_C3HHeJ_P0068404 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068405.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138565678 138614744 + MGP_C3HHeJ_P0068405 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068406.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138571423 138599385 + Rap1gap protein_coding processed_transcript MGP_C3HHeJ_T0068407.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138591228 138614745 + MGP_C3HHeJ_P0068407 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068408.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138603708 138613242 + MGP_C3HHeJ_P0068408 Rap1gap protein_coding protein_coding MGP_C3HHeJ_T0068409.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138608830 138614745 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068410.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138610168 138611895 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068411.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138612599 138613820 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068412.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138613064 138613703 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0068413.1 MGP_C3HHeJ_G0028683.1 mouse_genomes_project 4 138613094 138614586 + Rap1gap protein_coding retained_intron MGP_C3HHeJ_T0010509.1 MGP_C3HHeJ_G0008642.1 mouse_genomes_project 4 55520309 55520379 - Mir32 miRNA miRNA MGP_C3HHeJ_T0065537.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58079195 58080479 - Susd1 protein_coding retained_intron MGP_C3HHeJ_T0065538.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58079195 58203975 - MGP_C3HHeJ_P0065538 Susd1 protein_coding protein_coding MGP_C3HHeJ_T0065539.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58079266 58203975 - MGP_C3HHeJ_P0065539 Susd1 protein_coding protein_coding MGP_C3HHeJ_T0065540.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58093686 58097448 - Susd1 protein_coding retained_intron MGP_C3HHeJ_T0065541.1 MGP_C3HHeJ_G0028036.1 mouse_genomes_project 4 58096382 58124409 - Susd1 protein_coding retained_intron MGP_C3HHeJ_T0067885.1 MGP_C3HHeJ_G0028562.1 mouse_genomes_project 4 132701754 132725087 + MGP_C3HHeJ_P0067885 Taf12 protein_coding protein_coding MGP_C3HHeJ_T0067886.1 MGP_C3HHeJ_G0028562.1 mouse_genomes_project 4 132701792 132704168 + Taf12 protein_coding processed_transcript MGP_C3HHeJ_T0067887.1 MGP_C3HHeJ_G0028562.1 mouse_genomes_project 4 132701795 132722033 + MGP_C3HHeJ_P0067887 Taf12 protein_coding protein_coding MGP_C3HHeJ_T0014451.1 MGP_C3HHeJ_G0012555.1 mouse_genomes_project 4 77986994 77988271 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066457.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296209 108310065 + MGP_C3HHeJ_P0066457 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066458.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296238 108309828 + MGP_C3HHeJ_P0066458 Echdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066459.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296238 108310064 + MGP_C3HHeJ_P0066459 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066460.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296260 108310063 + MGP_C3HHeJ_P0066460 Echdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066461.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108296290 108309825 + MGP_C3HHeJ_P0066461 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066462.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300466 108309689 + MGP_C3HHeJ_P0066462 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0066463.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300538 108306161 + Echdc2 protein_coding retained_intron MGP_C3HHeJ_T0066464.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300894 108310064 + Echdc2 protein_coding processed_transcript MGP_C3HHeJ_T0066465.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108300905 108304605 + Echdc2 protein_coding processed_transcript MGP_C3HHeJ_T0066466.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108302913 108309916 + MGP_C3HHeJ_P0066466 Echdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066467.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108303416 108307856 + Echdc2 protein_coding retained_intron MGP_C3HHeJ_T0066468.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108304443 108309816 + Echdc2 protein_coding retained_intron MGP_C3HHeJ_T0066469.1 MGP_C3HHeJ_G0028245.1 mouse_genomes_project 4 108304563 108309845 + MGP_C3HHeJ_P0066469 Echdc2 protein_coding protein_coding MGP_C3HHeJ_T0004468.1 MGP_C3HHeJ_G0003878.1 mouse_genomes_project 4 130316483 130339893 - Gm12963 antisense antisense MGP_C3HHeJ_T0004469.1 MGP_C3HHeJ_G0003878.1 mouse_genomes_project 4 130319082 130339893 - Gm12963 antisense antisense MGP_C3HHeJ_T0004470.1 MGP_C3HHeJ_G0003878.1 mouse_genomes_project 4 130319086 130320701 - Gm12963 antisense antisense MGP_C3HHeJ_T0014516.1 MGP_C3HHeJ_G0012620.1 mouse_genomes_project 4 103952529 103952770 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007780.1 MGP_C3HHeJ_G0006355.1 mouse_genomes_project 4 61626116 61639260 + lincRNA lincRNA MGP_C3HHeJ_T0014560.1 MGP_C3HHeJ_G0012664.1 mouse_genomes_project 4 118254216 118254539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004365.1 MGP_C3HHeJ_G0003799.1 mouse_genomes_project 4 39620809 39622858 + Gm12406 antisense antisense MGP_C3HHeJ_T0065092.1 MGP_C3HHeJ_G0027923.1 mouse_genomes_project 4 41965153 41966958 - MGP_C3HHeJ_P0065092 Olfr159 protein_coding protein_coding MGP_C3HHeJ_T0066516.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109010566 109039011 + MGP_C3HHeJ_P0066516 Txndc12 protein_coding protein_coding MGP_C3HHeJ_T0066517.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109010600 109023908 + Txndc12 protein_coding processed_transcript MGP_C3HHeJ_T0066520.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109028351 109039011 + MGP_C3HHeJ_P0066520 Txndc12 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066521.1 MGP_C3HHeJ_G0028258.1 mouse_genomes_project 4 109034369 109036166 + Txndc12 protein_coding processed_transcript MGP_C3HHeJ_T0067876.1 MGP_C3HHeJ_G0028560.1 mouse_genomes_project 4 132598811 132627124 - MGP_C3HHeJ_P0067876 protein_coding protein_coding MGP_C3HHeJ_T0067877.1 MGP_C3HHeJ_G0028560.1 mouse_genomes_project 4 132600189 132626912 - MGP_C3HHeJ_P0067877 protein_coding protein_coding MGP_C3HHeJ_T0014623.1 MGP_C3HHeJ_G0012727.1 mouse_genomes_project 4 136572574 136573070 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014633.1 MGP_C3HHeJ_G0012737.1 mouse_genomes_project 4 142202914 142203729 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067604.1 MGP_C3HHeJ_G0028510.1 mouse_genomes_project 4 129348048 129355627 + MGP_C3HHeJ_P0067604 Fndc5 protein_coding protein_coding MGP_C3HHeJ_T0014565.1 MGP_C3HHeJ_G0012669.1 mouse_genomes_project 4 119023980 119024572 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099351.1 MGP_C3HHeJ_G0037545.1 mouse_genomes_project 4 56431496 56431600 + Gm24277 snRNA snRNA MGP_C3HHeJ_T0067477.1 MGP_C3HHeJ_G0028480.1 mouse_genomes_project 4 126711696 126716112 + MGP_C3HHeJ_P0067477 5730409E04Rik protein_coding protein_coding MGP_C3HHeJ_T0067478.1 MGP_C3HHeJ_G0028480.1 mouse_genomes_project 4 126711732 126716112 + MGP_C3HHeJ_P0067478 5730409E04Rik protein_coding protein_coding MGP_C3HHeJ_T0065123.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42345295 42391003 - MGP_C3HHeJ_P0065123 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065124.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42345298 42390721 - MGP_C3HHeJ_P0065124 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065125.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348505 42382328 - MGP_C3HHeJ_P0065125 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065126.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348509 42391043 - MGP_C3HHeJ_P0065126 Rnf38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065127.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348591 42358018 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065128.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42348593 42357897 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065129.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42361185 42373850 - MGP_C3HHeJ_P0065129 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065130.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42361239 42382439 - MGP_C3HHeJ_P0065130 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065131.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42361283 42391400 - MGP_C3HHeJ_P0065131 Rnf38 protein_coding protein_coding MGP_C3HHeJ_T0065132.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42370404 42390930 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065133.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42370411 42456443 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065134.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42370440 42391317 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0065135.1 MGP_C3HHeJ_G0027932.1 mouse_genomes_project 4 42382357 42390887 - Rnf38 protein_coding processed_transcript MGP_C3HHeJ_T0066033.1 MGP_C3HHeJ_G0028157.1 mouse_genomes_project 4 96220986 96287252 - MGP_C3HHeJ_P0066033 Cyp2j8 protein_coding protein_coding MGP_C3HHeJ_T0067581.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129197811 129208111 + Ak2 protein_coding processed_transcript MGP_C3HHeJ_T0067582.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129199077 129218651 + MGP_C3HHeJ_P0067582 Ak2 protein_coding protein_coding MGP_C3HHeJ_T0067583.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129199077 129215523 + MGP_C3HHeJ_P0067583 Ak2 protein_coding protein_coding MGP_C3HHeJ_T0067584.1 MGP_C3HHeJ_G0028506.1 mouse_genomes_project 4 129199206 129215351 + MGP_C3HHeJ_P0067584 Ak2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001387.1 MGP_C3HHeJ_G0001318.1 mouse_genomes_project 4 132510647 132516271 - TEC TEC MGP_C3HHeJ_T0014311.1 MGP_C3HHeJ_G0012415.1 mouse_genomes_project 4 25615327 25616334 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014314.1 MGP_C3HHeJ_G0012418.1 mouse_genomes_project 4 25856933 25857851 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099395.1 MGP_C3HHeJ_G0037589.1 mouse_genomes_project 4 132889943 132890037 + Gm23055 snRNA snRNA MGP_C3HHeJ_T0014470.1 MGP_C3HHeJ_G0012574.1 mouse_genomes_project 4 87663445 87663683 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014398.1 MGP_C3HHeJ_G0012502.1 mouse_genomes_project 4 53979583 53979935 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099403.1 MGP_C3HHeJ_G0037597.1 mouse_genomes_project 4 139534405 139534511 - Gm22961 snRNA snRNA MGP_C3HHeJ_T0099369.1 MGP_C3HHeJ_G0037563.1 mouse_genomes_project 4 101014261 101014324 - Gm22100 snRNA snRNA MGP_C3HHeJ_T0066745.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116344201 116396235 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066746.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116374320 116396276 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066747.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116374320 116396486 - MGP_C3HHeJ_P0066747 Faah protein_coding protein_coding MGP_C3HHeJ_T0066748.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116375844 116396287 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066749.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116375957 116377720 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066750.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116376365 116377589 - Faah protein_coding retained_intron MGP_C3HHeJ_T0066751.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116379376 116396235 - Faah protein_coding processed_transcript MGP_C3HHeJ_T0066752.1 MGP_C3HHeJ_G0028310.1 mouse_genomes_project 4 116383381 116396257 - Faah protein_coding processed_transcript MGP_C3HHeJ_T0004475.1 MGP_C3HHeJ_G0003883.1 mouse_genomes_project 4 133996559 133999738 - Gm13257 antisense antisense MGP_C3HHeJ_T0069236.1 MGP_C3HHeJ_G0028886.1 mouse_genomes_project 4 155618176 155739233 - MGP_C3HHeJ_P0069236 Ajap1 protein_coding protein_coding MGP_C3HHeJ_T0069237.1 MGP_C3HHeJ_G0028886.1 mouse_genomes_project 4 155619180 155738601 - MGP_C3HHeJ_P0069237 Ajap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065524.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57672042 57697018 + MGP_C3HHeJ_P0065524 Dnajc25 protein_coding protein_coding MGP_C3HHeJ_T0065525.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57680135 57700561 + MGP_C3HHeJ_P0065525 Dnajc25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065526.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57680146 57700561 + MGP_C3HHeJ_P0065526 Dnajc25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065528.1 MGP_C3HHeJ_G0028031.1 mouse_genomes_project 4 57680184 57699489 + MGP_C3HHeJ_P0065528 Dnajc25 protein_coding protein_coding MGP_C3HHeJ_T0068026.1 MGP_C3HHeJ_G0028594.1 mouse_genomes_project 4 134080208 134083340 + MGP_C3HHeJ_P0068026 Nr0b2 protein_coding protein_coding MGP_C3HHeJ_T0004368.1 MGP_C3HHeJ_G0003802.1 mouse_genomes_project 4 41683976 41688279 - Gm12454 antisense antisense MGP_C3HHeJ_T0004369.1 MGP_C3HHeJ_G0003802.1 mouse_genomes_project 4 41685205 41688302 - Gm12454 antisense antisense MGP_C3HHeJ_T0067772.1 MGP_C3HHeJ_G0028539.1 mouse_genomes_project 4 130396865 130423225 + MGP_C3HHeJ_P0067772 Pef1 protein_coding protein_coding MGP_C3HHeJ_T0067773.1 MGP_C3HHeJ_G0028539.1 mouse_genomes_project 4 130402670 130423224 + MGP_C3HHeJ_P0067773 Pef1 protein_coding protein_coding MGP_C3HHeJ_T0065642.1 MGP_C3HHeJ_G0028063.1 mouse_genomes_project 4 62269202 62272806 + MGP_C3HHeJ_P0065642 Orm1 protein_coding protein_coding MGP_C3HHeJ_T0011489.1 MGP_C3HHeJ_G0009622.1 mouse_genomes_project 4 133668098 133668386 - Gm24636 misc_RNA misc_RNA MGP_C3HHeJ_T0064665.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32771902 32804773 - MGP_C3HHeJ_P0064665 3110043O21Rik protein_coding protein_coding MGP_C3HHeJ_T0064666.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32771907 32805066 - MGP_C3HHeJ_P0064666 3110043O21Rik protein_coding protein_coding MGP_C3HHeJ_T0064667.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32777704 32788090 - 3110043O21Rik protein_coding retained_intron MGP_C3HHeJ_T0064668.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32791276 32805118 - 3110043O21Rik protein_coding retained_intron MGP_C3HHeJ_T0064669.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32797332 32805066 - 3110043O21Rik protein_coding processed_transcript MGP_C3HHeJ_T0064670.1 MGP_C3HHeJ_G0027835.1 mouse_genomes_project 4 32797516 32805066 - 3110043O21Rik protein_coding processed_transcript MGP_C3HHeJ_T0004412.1 MGP_C3HHeJ_G0003833.1 mouse_genomes_project 4 98654806 98661287 + Kank4os antisense antisense MGP_C3HHeJ_T0065424.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915930 53961426 + MGP_C3HHeJ_P0065424 Rad23b protein_coding protein_coding MGP_C3HHeJ_T0065425.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915937 53934124 + Rad23b protein_coding processed_transcript MGP_C3HHeJ_T0065426.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915939 53917072 + Rad23b protein_coding processed_transcript MGP_C3HHeJ_T0065427.1 MGP_C3HHeJ_G0028006.1 mouse_genomes_project 4 53915977 53946652 + Rad23b protein_coding processed_transcript MGP_C3HHeJ_T0010519.1 MGP_C3HHeJ_G0008652.1 mouse_genomes_project 4 91116245 91116325 - Mir6402 miRNA miRNA MGP_C3HHeJ_T0067462.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126521164 126554695 - MGP_C3HHeJ_P0067462 Ago1 protein_coding protein_coding MGP_C3HHeJ_T0067463.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126524473 126547897 - MGP_C3HHeJ_P0067463 Ago1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067464.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126525655 126545322 - MGP_C3HHeJ_P0067464 Ago1 protein_coding protein_coding MGP_C3HHeJ_T0067465.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126528719 126529481 - Ago1 protein_coding retained_intron MGP_C3HHeJ_T0067466.1 MGP_C3HHeJ_G0028477.1 mouse_genomes_project 4 126545429 126546240 - Ago1 protein_coding retained_intron MGP_C3HHeJ_T0065434.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55371804 55425027 - MGP_C3HHeJ_P0065434 Ikbkap protein_coding protein_coding MGP_C3HHeJ_T0065435.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55373136 55379433 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065436.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55373139 55385474 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065437.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55377002 55380539 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065438.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55390015 55394744 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0065439.1 MGP_C3HHeJ_G0028011.1 mouse_genomes_project 4 55398590 55401864 - Ikbkap protein_coding retained_intron MGP_C3HHeJ_T0064607.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30797981 30996755 + MGP_C3HHeJ_P0064607 Rngtt protein_coding protein_coding MGP_C3HHeJ_T0064608.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30797998 30995055 + MGP_C3HHeJ_P0064608 Rngtt protein_coding protein_coding MGP_C3HHeJ_T0064609.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30810608 30814411 + Rngtt protein_coding processed_transcript MGP_C3HHeJ_T0064610.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30813270 30827475 + Rngtt protein_coding processed_transcript MGP_C3HHeJ_T0064611.1 MGP_C3HHeJ_G0027821.1 mouse_genomes_project 4 30819332 30846868 + Rngtt protein_coding processed_transcript MGP_C3HHeJ_T0004354.1 MGP_C3HHeJ_G0003790.1 mouse_genomes_project 4 17003798 17010485 - 4930480G23Rik antisense antisense MGP_C3HHeJ_T0066522.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109055831 109118926 + MGP_C3HHeJ_P0066522 Rab3b protein_coding protein_coding MGP_C3HHeJ_T0066523.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109055968 109116794 + MGP_C3HHeJ_P0066523 Rab3b protein_coding protein_coding MGP_C3HHeJ_T0066524.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109065653 109116797 + MGP_C3HHeJ_P0066524 Rab3b protein_coding protein_coding MGP_C3HHeJ_T0066525.1 MGP_C3HHeJ_G0028261.1 mouse_genomes_project 4 109114708 109116514 + Rab3b protein_coding processed_transcript MGP_C3HHeJ_T0014636.1 MGP_C3HHeJ_G0012740.1 mouse_genomes_project 4 144390114 144390573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064307.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613048 7638170 + MGP_C3HHeJ_P0064307 2610301B20Rik protein_coding protein_coding MGP_C3HHeJ_T0064308.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613075 7632217 + 2610301B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0064309.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613115 7636824 + 2610301B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0064310.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7613118 7638174 + MGP_C3HHeJ_P0064310 2610301B20Rik protein_coding protein_coding MGP_C3HHeJ_T0064311.1 MGP_C3HHeJ_G0027744.1 mouse_genomes_project 4 7617610 7630631 + 2610301B20Rik protein_coding processed_transcript MGP_C3HHeJ_T0066264.1 MGP_C3HHeJ_G0028210.1 mouse_genomes_project 4 105074204 105150760 - MGP_C3HHeJ_P0066264 Prkaa2 protein_coding protein_coding MGP_C3HHeJ_T0010557.1 MGP_C3HHeJ_G0008690.1 mouse_genomes_project 4 139229349 139229418 - Mir7019 miRNA miRNA MGP_C3HHeJ_T0068570.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141668377 - MGP_C3HHeJ_P0068570 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068571.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141739117 - MGP_C3HHeJ_P0068571 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068572.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141739123 - MGP_C3HHeJ_P0068572 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068573.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141663653 - MGP_C3HHeJ_P0068573 Arhgef10l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068574.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141760351 - MGP_C3HHeJ_P0068574 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068575.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141670901 - MGP_C3HHeJ_P0068575 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068576.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141598631 141739117 - MGP_C3HHeJ_P0068576 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068577.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141628454 141653670 - MGP_C3HHeJ_P0068577 Arhgef10l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068578.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141661984 141668361 - MGP_C3HHeJ_P0068578 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068579.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141667423 141678582 - Arhgef10l protein_coding retained_intron MGP_C3HHeJ_T0068580.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141678473 141739727 - MGP_C3HHeJ_P0068580 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0068581.1 MGP_C3HHeJ_G0028723.1 mouse_genomes_project 4 141679710 141704021 - MGP_C3HHeJ_P0068581 Arhgef10l protein_coding protein_coding MGP_C3HHeJ_T0067152.1 MGP_C3HHeJ_G0028397.1 mouse_genomes_project 4 119961923 119993150 + MGP_C3HHeJ_P0067152 Zmynd12 protein_coding protein_coding MGP_C3HHeJ_T0067153.1 MGP_C3HHeJ_G0028397.1 mouse_genomes_project 4 119961981 119989480 + Zmynd12 protein_coding processed_transcript MGP_C3HHeJ_T0067154.1 MGP_C3HHeJ_G0028397.1 mouse_genomes_project 4 119983851 120007198 + Zmynd12 protein_coding processed_transcript MGP_C3HHeJ_T0102004.1 MGP_C3HHeJ_G0039969.1 mouse_genomes_project 4 112924242 112925289 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004440.1 MGP_C3HHeJ_G0003855.1 mouse_genomes_project 4 117782060 117783969 + Gm12843 antisense antisense MGP_C3HHeJ_T0004441.1 MGP_C3HHeJ_G0003855.1 mouse_genomes_project 4 117782387 117783617 + Gm12843 antisense antisense MGP_C3HHeJ_T0064506.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611412 21709324 + Mms22l protein_coding retained_intron MGP_C3HHeJ_T0064507.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611412 21731447 + MGP_C3HHeJ_P0064507 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064508.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611423 21625585 + MGP_C3HHeJ_P0064508 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064509.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611426 21612006 + Mms22l protein_coding processed_transcript MGP_C3HHeJ_T0064510.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611505 21731443 + MGP_C3HHeJ_P0064510 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064511.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21611869 21740916 + MGP_C3HHeJ_P0064511 Mms22l protein_coding unknown_likely_coding MGP_C3HHeJ_T0064512.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21612861 21656234 + MGP_C3HHeJ_P0064512 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064513.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21632270 21731446 + Mms22l protein_coding retained_intron MGP_C3HHeJ_T0064514.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21634542 21728481 + MGP_C3HHeJ_P0064514 Mms22l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064515.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21663404 21701339 + MGP_C3HHeJ_P0064515 Mms22l protein_coding protein_coding MGP_C3HHeJ_T0064516.1 MGP_C3HHeJ_G0027797.1 mouse_genomes_project 4 21705391 21719194 + Mms22l protein_coding processed_transcript MGP_C3HHeJ_T0066513.1 MGP_C3HHeJ_G0028257.1 mouse_genomes_project 4 108991822 109009574 - MGP_C3HHeJ_P0066513 Btf3l4 protein_coding protein_coding MGP_C3HHeJ_T0066514.1 MGP_C3HHeJ_G0028257.1 mouse_genomes_project 4 108993754 109001945 - Btf3l4 protein_coding processed_transcript MGP_C3HHeJ_T0066515.1 MGP_C3HHeJ_G0028257.1 mouse_genomes_project 4 109001452 109006523 - Btf3l4 protein_coding processed_transcript MGP_C3HHeJ_T0010494.1 MGP_C3HHeJ_G0008627.1 mouse_genomes_project 4 20736890 20736980 - Gm25978 miRNA miRNA MGP_C3HHeJ_T0014357.1 MGP_C3HHeJ_G0012461.1 mouse_genomes_project 4 39084428 39084762 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065670.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62908681 62969558 - MGP_C3HHeJ_P0065670 Tnc protein_coding protein_coding MGP_C3HHeJ_T0065671.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62908681 62995824 - MGP_C3HHeJ_P0065671 Tnc protein_coding protein_coding MGP_C3HHeJ_T0065672.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62908681 62969558 - MGP_C3HHeJ_P0065672 Tnc protein_coding protein_coding MGP_C3HHeJ_T0065673.1 MGP_C3HHeJ_G0028071.1 mouse_genomes_project 4 62961501 62969558 - MGP_C3HHeJ_P0065673 Tnc protein_coding protein_coding MGP_C3HHeJ_T0066175.1 MGP_C3HHeJ_G0028192.1 mouse_genomes_project 4 101841933 101846836 + MGP_C3HHeJ_P0066175 protein_coding protein_coding MGP_C3HHeJ_T0068765.1 MGP_C3HHeJ_G0028775.1 mouse_genomes_project 4 145004348 145014074 + MGP_C3HHeJ_P0068765 protein_coding protein_coding MGP_C3HHeJ_T0068265.1 MGP_C3HHeJ_G0028648.1 mouse_genomes_project 4 136591917 136594850 - MGP_C3HHeJ_P0068265 Pnrc2 protein_coding protein_coding MGP_C3HHeJ_T0068266.1 MGP_C3HHeJ_G0028648.1 mouse_genomes_project 4 136593323 136594570 - MGP_C3HHeJ_P0068266 Pnrc2 protein_coding protein_coding MGP_C3HHeJ_T0068267.1 MGP_C3HHeJ_G0028648.1 mouse_genomes_project 4 136593450 136594061 - MGP_C3HHeJ_P0068267 Pnrc2 protein_coding protein_coding MGP_C3HHeJ_T0014529.1 MGP_C3HHeJ_G0012633.1 mouse_genomes_project 4 107874037 107874463 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065175.1 MGP_C3HHeJ_G0027937.1 mouse_genomes_project 4 43250477 43279115 - MGP_C3HHeJ_P0065175 Zbtb5 protein_coding protein_coding MGP_C3HHeJ_T0065176.1 MGP_C3HHeJ_G0027937.1 mouse_genomes_project 4 43253983 43278848 - MGP_C3HHeJ_P0065176 Zbtb5 protein_coding protein_coding MGP_C3HHeJ_T0064452.1 MGP_C3HHeJ_G0027785.1 mouse_genomes_project 4 17034039 17047414 + MGP_C3HHeJ_P0064452 Ttpa protein_coding protein_coding MGP_C3HHeJ_T0064453.1 MGP_C3HHeJ_G0027785.1 mouse_genomes_project 4 17034544 17055130 + MGP_C3HHeJ_P0064453 Ttpa protein_coding protein_coding MGP_C3HHeJ_T0011475.1 MGP_C3HHeJ_G0009608.1 mouse_genomes_project 4 77955752 77955838 + Gm22262 misc_RNA misc_RNA MGP_C3HHeJ_T0010564.1 MGP_C3HHeJ_G0008697.1 mouse_genomes_project 4 144373633 144373696 - Mir7021 miRNA miRNA MGP_C3HHeJ_T0068324.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060567 137091754 + MGP_C3HHeJ_P0068324 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068325.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060593 137110589 + MGP_C3HHeJ_P0068325 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068326.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060593 137091754 + MGP_C3HHeJ_P0068326 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068327.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060650 137091936 + MGP_C3HHeJ_P0068327 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068328.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137060653 137080458 + MGP_C3HHeJ_P0068328 Hnrnpr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068329.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137061160 137077592 + MGP_C3HHeJ_P0068329 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068330.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137061216 137080486 + MGP_C3HHeJ_P0068330 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068331.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137061310 137066050 + MGP_C3HHeJ_P0068331 Hnrnpr protein_coding protein_coding MGP_C3HHeJ_T0068332.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137086855 137090055 + Hnrnpr protein_coding retained_intron MGP_C3HHeJ_T0068333.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137089800 137094039 + Hnrnpr protein_coding retained_intron MGP_C3HHeJ_T0068334.1 MGP_C3HHeJ_G0028662.1 mouse_genomes_project 4 137106926 137109191 + Hnrnpr protein_coding processed_transcript MGP_C3HHeJ_T0066951.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118049016 118174587 + MGP_C3HHeJ_P0066951 Eri3 protein_coding protein_coding MGP_C3HHeJ_T0066952.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118051260 118081294 + MGP_C3HHeJ_P0066952 Eri3 protein_coding protein_coding MGP_C3HHeJ_T0066953.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118063324 118174587 + Eri3 protein_coding processed_transcript MGP_C3HHeJ_T0066954.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118081263 118116520 + MGP_C3HHeJ_P0066954 Eri3 protein_coding protein_coding MGP_C3HHeJ_T0066955.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118087654 118116179 + Eri3 protein_coding processed_transcript MGP_C3HHeJ_T0066956.1 MGP_C3HHeJ_G0028347.1 mouse_genomes_project 4 118138168 118174571 + Eri3 protein_coding processed_transcript MGP_C3HHeJ_T0017823.1 MGP_C3HHeJ_G0015306.1 mouse_genomes_project 4 44059902 44061749 - Gm12409 processed_transcript processed_transcript MGP_C3HHeJ_T0014661.1 MGP_C3HHeJ_G0012765.1 mouse_genomes_project 4 156315170 156315860 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067665.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129796664 129809166 - MGP_C3HHeJ_P0067665 Lck protein_coding protein_coding MGP_C3HHeJ_T0067666.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129796669 129824989 - MGP_C3HHeJ_P0067666 Lck protein_coding protein_coding MGP_C3HHeJ_T0067667.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129796669 129809185 - MGP_C3HHeJ_P0067667 Lck protein_coding protein_coding MGP_C3HHeJ_T0067668.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129797215 129806651 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067669.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129801704 129807034 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067670.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129806278 129807264 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067671.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129807656 129808881 - Lck protein_coding retained_intron MGP_C3HHeJ_T0067672.1 MGP_C3HHeJ_G0028524.1 mouse_genomes_project 4 129808158 129809166 - MGP_C3HHeJ_P0067672 Lck protein_coding protein_coding MGP_C3HHeJ_T0010545.1 MGP_C3HHeJ_G0008678.1 mouse_genomes_project 4 133694026 133694088 + Mir7017 miRNA miRNA MGP_C3HHeJ_T0014598.1 MGP_C3HHeJ_G0012702.1 mouse_genomes_project 4 127169869 127170089 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004449.1 MGP_C3HHeJ_G0003863.1 mouse_genomes_project 4 119782040 119786459 - Gm12927 antisense antisense MGP_C3HHeJ_T0014270.1 MGP_C3HHeJ_G0012374.1 mouse_genomes_project 4 13995239 13995718 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068426.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138887780 139012952 + MGP_C3HHeJ_P0068426 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068427.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138887780 139002092 + MGP_C3HHeJ_P0068427 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068428.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138887780 139024347 + MGP_C3HHeJ_P0068428 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068429.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888214 139103770 + MGP_C3HHeJ_P0068429 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068430.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888214 139103770 + MGP_C3HHeJ_P0068430 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068431.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888234 138888918 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068432.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888242 138953867 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068433.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888271 139102854 + MGP_C3HHeJ_P0068433 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068434.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138888706 139103753 + MGP_C3HHeJ_P0068434 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068435.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 138900106 139000067 + MGP_C3HHeJ_P0068435 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068436.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139048538 139105180 + MGP_C3HHeJ_P0068436 Eif4g3 protein_coding protein_coding MGP_C3HHeJ_T0068437.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139074854 139105180 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068438.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139077510 139085460 + Eif4g3 protein_coding retained_intron MGP_C3HHeJ_T0068439.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139081475 139085238 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0068440.1 MGP_C3HHeJ_G0028686.1 mouse_genomes_project 4 139098414 139100145 + Eif4g3 protein_coding processed_transcript MGP_C3HHeJ_T0014438.1 MGP_C3HHeJ_G0012542.1 mouse_genomes_project 4 74261458 74261773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068356.1 MGP_C3HHeJ_G0028667.1 mouse_genomes_project 4 137385831 137388773 + MGP_C3HHeJ_P0068356 4930549C01Rik protein_coding protein_coding MGP_C3HHeJ_T0014233.1 MGP_C3HHeJ_G0012337.1 mouse_genomes_project 4 3713135 3713603 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014296.1 MGP_C3HHeJ_G0012400.1 mouse_genomes_project 4 22437518 22438212 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099333.1 MGP_C3HHeJ_G0037527.1 mouse_genomes_project 4 23085935 23086041 + Gm24965 snRNA snRNA MGP_C3HHeJ_T0014522.1 MGP_C3HHeJ_G0012626.1 mouse_genomes_project 4 106150837 106151196 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068478.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139667504 139682530 - MGP_C3HHeJ_P0068478 Ubxn10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068479.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139675883 139682574 - MGP_C3HHeJ_P0068479 Ubxn10 protein_coding protein_coding MGP_C3HHeJ_T0068480.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139675883 139694511 - MGP_C3HHeJ_P0068480 Ubxn10 protein_coding protein_coding MGP_C3HHeJ_T0068481.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139676183 139682167 - MGP_C3HHeJ_P0068481 Ubxn10 protein_coding protein_coding MGP_C3HHeJ_T0068485.1 MGP_C3HHeJ_G0028697.1 mouse_genomes_project 4 139689226 139694480 - Ubxn10 protein_coding processed_transcript MGP_C3HHeJ_T0068998.1 MGP_C3HHeJ_G0028845.1 mouse_genomes_project 4 151626191 151701484 + MGP_C3HHeJ_P0068998 Clstn1 protein_coding protein_coding MGP_C3HHeJ_T0068999.1 MGP_C3HHeJ_G0028845.1 mouse_genomes_project 4 151626757 151679681 + Clstn1 protein_coding processed_transcript MGP_C3HHeJ_T0069000.1 MGP_C3HHeJ_G0028845.1 mouse_genomes_project 4 151679485 151684407 + Clstn1 protein_coding retained_intron MGP_C3HHeJ_T0014239.1 MGP_C3HHeJ_G0012343.1 mouse_genomes_project 4 6697650 6698313 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007836.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107799912 107872986 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0007837.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107799944 107819431 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0007838.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107817877 107827988 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0007839.1 MGP_C3HHeJ_G0006402.1 mouse_genomes_project 4 107817900 107819488 + 1700047F07Rik lincRNA lincRNA MGP_C3HHeJ_T0064419.1 MGP_C3HHeJ_G0027771.1 mouse_genomes_project 4 12771295 12799407 + MGP_C3HHeJ_P0064419 Calb1 protein_coding protein_coding MGP_C3HHeJ_T0064420.1 MGP_C3HHeJ_G0027771.1 mouse_genomes_project 4 12771297 12786723 + Calb1 protein_coding retained_intron MGP_C3HHeJ_T0064421.1 MGP_C3HHeJ_G0027771.1 mouse_genomes_project 4 12776396 12787029 + Calb1 protein_coding retained_intron MGP_C3HHeJ_T0011472.1 MGP_C3HHeJ_G0009605.1 mouse_genomes_project 4 53034877 53035119 + Gm25687 misc_RNA misc_RNA MGP_C3HHeJ_T0099349.1 MGP_C3HHeJ_G0037543.1 mouse_genomes_project 4 47939373 47939477 + Gm26424 snRNA snRNA MGP_C3HHeJ_T0101991.1 MGP_C3HHeJ_G0039956.1 mouse_genomes_project 4 86135540 86141627 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069238.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227439 156232128 + MGP_C3HHeJ_P0069238 A430005L14Rik protein_coding protein_coding MGP_C3HHeJ_T0069239.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227439 156232121 + MGP_C3HHeJ_P0069239 A430005L14Rik protein_coding protein_coding MGP_C3HHeJ_T0069240.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227457 156230269 + A430005L14Rik protein_coding retained_intron MGP_C3HHeJ_T0069241.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227468 156231714 + MGP_C3HHeJ_P0069241 A430005L14Rik protein_coding protein_coding MGP_C3HHeJ_T0069242.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227468 156232006 + MGP_C3HHeJ_P0069242 A430005L14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069243.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156227531 156230937 + A430005L14Rik protein_coding processed_transcript MGP_C3HHeJ_T0069244.1 MGP_C3HHeJ_G0028887.1 mouse_genomes_project 4 156229994 156231292 + A430005L14Rik protein_coding retained_intron MGP_C3HHeJ_T0067237.1 MGP_C3HHeJ_G0028421.1 mouse_genomes_project 4 121903057 121914195 - MGP_C3HHeJ_P0067237 Gm12888 protein_coding protein_coding MGP_C3HHeJ_T0066303.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106818030 106874306 - MGP_C3HHeJ_P0066303 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066304.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106820669 106879464 - MGP_C3HHeJ_P0066304 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066305.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106820825 106845821 - MGP_C3HHeJ_P0066305 Acot11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066306.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106827460 106829713 - Acot11 protein_coding processed_transcript MGP_C3HHeJ_T0066307.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106836645 106874303 - MGP_C3HHeJ_P0066307 Acot11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066308.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106838055 106874250 - MGP_C3HHeJ_P0066308 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066309.1 MGP_C3HHeJ_G0028223.1 mouse_genomes_project 4 106838098 106874709 - MGP_C3HHeJ_P0066309 Acot11 protein_coding protein_coding MGP_C3HHeJ_T0066825.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117011735 117037900 - MGP_C3HHeJ_P0066825 Nasp protein_coding protein_coding MGP_C3HHeJ_T0066826.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117012292 117038344 - MGP_C3HHeJ_P0066826 Nasp protein_coding protein_coding MGP_C3HHeJ_T0066827.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117012292 117037881 - MGP_C3HHeJ_P0066827 Nasp protein_coding protein_coding MGP_C3HHeJ_T0066828.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117013409 117016932 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066829.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117013475 117015609 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066830.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117022150 117037896 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066831.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117027679 117034331 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0066832.1 MGP_C3HHeJ_G0028325.1 mouse_genomes_project 4 117029281 117037851 - Nasp protein_coding processed_transcript MGP_C3HHeJ_T0004432.1 MGP_C3HHeJ_G0003848.1 mouse_genomes_project 4 110201913 110202988 - Dmrta2os antisense antisense MGP_C3HHeJ_T0004433.1 MGP_C3HHeJ_G0003848.1 mouse_genomes_project 4 110201922 110202666 - Dmrta2os antisense antisense MGP_C3HHeJ_T0102007.1 MGP_C3HHeJ_G0039972.1 mouse_genomes_project 4 115430277 115437905 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066716.1 MGP_C3HHeJ_G0028303.1 mouse_genomes_project 4 116153595 116154780 - MGP_C3HHeJ_P0066716 Tex38 protein_coding protein_coding MGP_C3HHeJ_T0014427.1 MGP_C3HHeJ_G0012531.1 mouse_genomes_project 4 70798585 70800297 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065070.1 MGP_C3HHeJ_G0027916.1 mouse_genomes_project 4 41845203 41846028 - MGP_C3HHeJ_P0065070 Spag8 protein_coding protein_coding MGP_C3HHeJ_T0065071.1 MGP_C3HHeJ_G0027916.1 mouse_genomes_project 4 41845203 41847421 - MGP_C3HHeJ_P0065071 Spag8 protein_coding protein_coding MGP_C3HHeJ_T0065072.1 MGP_C3HHeJ_G0027916.1 mouse_genomes_project 4 41845544 41847463 - MGP_C3HHeJ_P0065072 Spag8 protein_coding protein_coding MGP_C3HHeJ_T0065219.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146446 44191367 + MGP_C3HHeJ_P0065219 Stra6l protein_coding protein_coding MGP_C3HHeJ_T0065220.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146598 44191367 + MGP_C3HHeJ_P0065220 Stra6l protein_coding protein_coding MGP_C3HHeJ_T0065221.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146729 44191367 + MGP_C3HHeJ_P0065221 Stra6l protein_coding protein_coding MGP_C3HHeJ_T0065222.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44146779 44164090 + Stra6l protein_coding processed_transcript MGP_C3HHeJ_T0065223.1 MGP_C3HHeJ_G0027948.1 mouse_genomes_project 4 44178565 44190977 + Stra6l protein_coding retained_intron MGP_C3HHeJ_T0065929.1 MGP_C3HHeJ_G0028122.1 mouse_genomes_project 4 88290091 88290661 - MGP_C3HHeJ_P0065929 Ifna16 protein_coding protein_coding MGP_C3HHeJ_T0004378.1 MGP_C3HHeJ_G0003810.1 mouse_genomes_project 4 43513127 43522451 - Frmpd1os antisense antisense MGP_C3HHeJ_T0014313.1 MGP_C3HHeJ_G0012417.1 mouse_genomes_project 4 25824010 25824769 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064789.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39639499 39682526 - MGP_C3HHeJ_P0064789 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064790.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39639499 39684160 - MGP_C3HHeJ_P0064790 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064791.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39645297 39646065 - Cntfr protein_coding processed_transcript MGP_C3HHeJ_T0064792.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39651435 39682529 - MGP_C3HHeJ_P0064792 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064793.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39651435 39684160 - MGP_C3HHeJ_P0064793 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0064794.1 MGP_C3HHeJ_G0027865.1 mouse_genomes_project 4 39652743 39683019 - MGP_C3HHeJ_P0064794 Cntfr protein_coding protein_coding MGP_C3HHeJ_T0067362.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124928667 124946839 - MGP_C3HHeJ_P0067362 Cdca8 protein_coding protein_coding MGP_C3HHeJ_T0067363.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124929313 124946795 - MGP_C3HHeJ_P0067363 Cdca8 protein_coding protein_coding MGP_C3HHeJ_T0067364.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124929758 124946329 - Cdca8 protein_coding processed_transcript MGP_C3HHeJ_T0067365.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124933826 124946703 - Cdca8 protein_coding processed_transcript MGP_C3HHeJ_T0067366.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124934006 124946764 - Cdca8 protein_coding retained_intron MGP_C3HHeJ_T0067367.1 MGP_C3HHeJ_G0028455.1 mouse_genomes_project 4 124936884 124949233 - MGP_C3HHeJ_P0067367 Cdca8 protein_coding protein_coding MGP_C3HHeJ_T0017852.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109864355 109870661 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017853.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109865321 109870687 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017854.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109865448 109866965 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017855.1 MGP_C3HHeJ_G0015328.1 mouse_genomes_project 4 109865786 109870442 - 9630013D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0065523.1 MGP_C3HHeJ_G0028030.1 mouse_genomes_project 4 57641773 57664199 - MGP_C3HHeJ_P0065523 Ptgr1 protein_coding protein_coding MGP_C3HHeJ_T0014510.1 MGP_C3HHeJ_G0012614.1 mouse_genomes_project 4 101282665 101283379 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068368.1 MGP_C3HHeJ_G0028673.1 mouse_genomes_project 4 137732897 137760010 - MGP_C3HHeJ_P0068368 Epha8 protein_coding protein_coding MGP_C3HHeJ_T0007758.1 MGP_C3HHeJ_G0006339.1 mouse_genomes_project 4 50481211 50564486 - C630028M04Rik lincRNA lincRNA MGP_C3HHeJ_T0007854.1 MGP_C3HHeJ_G0006416.1 mouse_genomes_project 4 123869552 123875754 - Gm26606 lincRNA lincRNA MGP_C3HHeJ_T0007863.1 MGP_C3HHeJ_G0006421.1 mouse_genomes_project 4 124566781 124572769 + 4933407E24Rik lincRNA lincRNA MGP_C3HHeJ_T0014647.1 MGP_C3HHeJ_G0012751.1 mouse_genomes_project 4 149741140 149741566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066492.1 MGP_C3HHeJ_G0028252.1 mouse_genomes_project 4 108720427 108724271 - Prpf38a protein_coding processed_transcript MGP_C3HHeJ_T0066493.1 MGP_C3HHeJ_G0028252.1 mouse_genomes_project 4 108722125 108735661 - MGP_C3HHeJ_P0066493 Prpf38a protein_coding protein_coding MGP_C3HHeJ_T0066494.1 MGP_C3HHeJ_G0028252.1 mouse_genomes_project 4 108722128 108729932 - Prpf38a protein_coding processed_transcript MGP_C3HHeJ_T0014620.1 MGP_C3HHeJ_G0012724.1 mouse_genomes_project 4 136070243 136070321 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068541.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348415 140376817 + MGP_C3HHeJ_P0068541 Emc1 protein_coding protein_coding MGP_C3HHeJ_T0068542.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348421 140376817 + MGP_C3HHeJ_P0068542 Emc1 protein_coding protein_coding MGP_C3HHeJ_T0068543.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348421 140376817 + MGP_C3HHeJ_P0068543 Emc1 protein_coding protein_coding MGP_C3HHeJ_T0068544.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140348437 140350261 + Emc1 protein_coding processed_transcript MGP_C3HHeJ_T0068546.1 MGP_C3HHeJ_G0028714.1 mouse_genomes_project 4 140356097 140373259 + Emc1 protein_coding processed_transcript MGP_C3HHeJ_T0014380.1 MGP_C3HHeJ_G0012484.1 mouse_genomes_project 4 50759476 50760096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014285.1 MGP_C3HHeJ_G0012389.1 mouse_genomes_project 4 19074593 19076021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067446.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126399133 126404456 - Adprhl2 protein_coding processed_transcript MGP_C3HHeJ_T0067447.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126399133 126404790 - MGP_C3HHeJ_P0067447 Adprhl2 protein_coding protein_coding MGP_C3HHeJ_T0067448.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126399138 126404554 - Adprhl2 protein_coding processed_transcript MGP_C3HHeJ_T0067449.1 MGP_C3HHeJ_G0028474.1 mouse_genomes_project 4 126401237 126404448 - Adprhl2 protein_coding processed_transcript MGP_C3HHeJ_T0007920.1 MGP_C3HHeJ_G0006457.1 mouse_genomes_project 4 139112356 139112832 + 2310026L22Rik lincRNA lincRNA MGP_C3HHeJ_T0014356.1 MGP_C3HHeJ_G0012460.1 mouse_genomes_project 4 38630868 38631265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014323.1 MGP_C3HHeJ_G0012427.1 mouse_genomes_project 4 29463944 29466075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014643.1 MGP_C3HHeJ_G0012747.1 mouse_genomes_project 4 145020340 145020596 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014289.1 MGP_C3HHeJ_G0012393.1 mouse_genomes_project 4 19789893 19790595 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014641.1 MGP_C3HHeJ_G0012745.1 mouse_genomes_project 4 144950164 144950757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010547.1 MGP_C3HHeJ_G0008680.1 mouse_genomes_project 4 134087798 134087924 - Gm23158 miRNA miRNA MGP_C3HHeJ_T0014498.1 MGP_C3HHeJ_G0012602.1 mouse_genomes_project 4 98188445 98188753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067233.1 MGP_C3HHeJ_G0028419.1 mouse_genomes_project 4 121700587 121704163 - MGP_C3HHeJ_P0067233 Tmco2 protein_coding protein_coding MGP_C3HHeJ_T0014456.1 MGP_C3HHeJ_G0012560.1 mouse_genomes_project 4 79791973 79792457 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017859.1 MGP_C3HHeJ_G0015331.1 mouse_genomes_project 4 117687579 117688028 - 1700012C08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0065256.1 MGP_C3HHeJ_G0027955.1 mouse_genomes_project 4 44669920 44672725 + MGP_C3HHeJ_P0065256 Foxe1 protein_coding protein_coding MGP_C3HHeJ_T0098136.1 MGP_C3HHeJ_G0036348.1 mouse_genomes_project 4 111632038 111632154 - n-R5s191 rRNA rRNA MGP_C3HHeJ_T0064527.1 MGP_C3HHeJ_G0027800.1 mouse_genomes_project 4 22108342 22150098 + Gpr63 protein_coding processed_transcript MGP_C3HHeJ_T0064528.1 MGP_C3HHeJ_G0027800.1 mouse_genomes_project 4 22115452 22152031 + MGP_C3HHeJ_P0064528 Gpr63 protein_coding protein_coding MGP_C3HHeJ_T0064480.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899315 18927573 + MGP_C3HHeJ_P0064480 Pnisr protein_coding protein_coding MGP_C3HHeJ_T0064481.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899780 18924853 + MGP_C3HHeJ_P0064481 Pnisr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064482.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899787 18927565 + MGP_C3HHeJ_P0064482 Pnisr protein_coding protein_coding MGP_C3HHeJ_T0064483.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899790 18912201 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064484.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899790 18922440 + MGP_C3HHeJ_P0064484 Pnisr protein_coding protein_coding MGP_C3HHeJ_T0064485.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899796 18909723 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064486.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899805 18906657 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064487.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18899813 18913856 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064488.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18905800 18910935 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064489.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18910458 18913776 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064490.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18910731 18912619 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064491.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18922131 18924962 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0064492.1 MGP_C3HHeJ_G0027792.1 mouse_genomes_project 4 18925301 18926354 + Pnisr protein_coding processed_transcript MGP_C3HHeJ_T0065453.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55490436 55579954 - MGP_C3HHeJ_P0065453 Tmem245 protein_coding protein_coding MGP_C3HHeJ_T0065454.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55503879 55567343 - Tmem245 protein_coding processed_transcript MGP_C3HHeJ_T0065455.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55503879 55551583 - MGP_C3HHeJ_P0065455 Tmem245 protein_coding protein_coding MGP_C3HHeJ_T0065456.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55504250 55579928 - MGP_C3HHeJ_P0065456 Tmem245 protein_coding protein_coding MGP_C3HHeJ_T0065457.1 MGP_C3HHeJ_G0028014.1 mouse_genomes_project 4 55509668 55579941 - Tmem245 protein_coding processed_transcript MGP_C3HHeJ_T0007948.1 MGP_C3HHeJ_G0006484.1 mouse_genomes_project 4 156172592 156173873 + Gm13115 lincRNA lincRNA MGP_C3HHeJ_T0014566.1 MGP_C3HHeJ_G0012670.1 mouse_genomes_project 4 119297217 119297712 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099392.1 MGP_C3HHeJ_G0037586.1 mouse_genomes_project 4 129700773 129700913 + Gm24621 snRNA snRNA MGP_C3HHeJ_T0065934.1 MGP_C3HHeJ_G0028127.1 mouse_genomes_project 4 88444891 88445938 + MGP_C3HHeJ_P0065934 protein_coding protein_coding MGP_C3HHeJ_T0014372.1 MGP_C3HHeJ_G0012476.1 mouse_genomes_project 4 47088227 47088592 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017822.1 MGP_C3HHeJ_G0015305.1 mouse_genomes_project 4 42306639 42324900 + Gm12503 processed_transcript processed_transcript MGP_C3HHeJ_T0068204.1 MGP_C3HHeJ_G0028635.1 mouse_genomes_project 4 135567156 135573805 + MGP_C3HHeJ_P0068204 Syf2 protein_coding protein_coding MGP_C3HHeJ_T0068205.1 MGP_C3HHeJ_G0028635.1 mouse_genomes_project 4 135567160 135571318 + Syf2 protein_coding retained_intron MGP_C3HHeJ_T0068206.1 MGP_C3HHeJ_G0028635.1 mouse_genomes_project 4 135567268 135572347 + Syf2 protein_coding retained_intron MGP_C3HHeJ_T0067255.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122884548 122885636 + MGP_C3HHeJ_P0067255 Mycl protein_coding protein_coding MGP_C3HHeJ_T0067256.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122884840 122891413 + MGP_C3HHeJ_P0067256 Mycl protein_coding protein_coding MGP_C3HHeJ_T0067257.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122884995 122891413 + MGP_C3HHeJ_P0067257 Mycl protein_coding protein_coding MGP_C3HHeJ_T0067258.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122887807 122889395 + Mycl protein_coding processed_transcript MGP_C3HHeJ_T0067259.1 MGP_C3HHeJ_G0028427.1 mouse_genomes_project 4 122888266 122889445 + Mycl protein_coding processed_transcript MGP_C3HHeJ_T0014468.1 MGP_C3HHeJ_G0012572.1 mouse_genomes_project 4 86362876 86364968 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069175.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154367625 154465747 + MGP_C3HHeJ_P0069175 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069176.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154375256 154409684 + Acot7 protein_coding processed_transcript MGP_C3HHeJ_T0069177.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154375625 154465750 + MGP_C3HHeJ_P0069177 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069178.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154375697 154465742 + MGP_C3HHeJ_P0069178 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069179.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154390301 154465742 + MGP_C3HHeJ_P0069179 Acot7 protein_coding protein_coding MGP_C3HHeJ_T0069180.1 MGP_C3HHeJ_G0028877.1 mouse_genomes_project 4 154390359 154409764 + Acot7 protein_coding processed_transcript MGP_C3HHeJ_T0014386.1 MGP_C3HHeJ_G0012490.1 mouse_genomes_project 4 51443852 51445938 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068587.1 MGP_C3HHeJ_G0028725.1 mouse_genomes_project 4 141831320 141846564 - MGP_C3HHeJ_P0068587 Padi6 protein_coding protein_coding MGP_C3HHeJ_T0068588.1 MGP_C3HHeJ_G0028725.1 mouse_genomes_project 4 141836241 141836959 - Padi6 protein_coding processed_transcript MGP_C3HHeJ_T0068589.1 MGP_C3HHeJ_G0028725.1 mouse_genomes_project 4 141839607 141845554 - MGP_C3HHeJ_P0068589 Padi6 protein_coding protein_coding MGP_C3HHeJ_T0067010.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118430805 118637751 - MGP_C3HHeJ_P0067010 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067011.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118430809 118637775 - MGP_C3HHeJ_P0067011 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067012.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118430811 118637743 - MGP_C3HHeJ_P0067012 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067013.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118438924 118530584 - MGP_C3HHeJ_P0067013 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0067014.1 MGP_C3HHeJ_G0028358.1 mouse_genomes_project 4 118439016 118469127 - MGP_C3HHeJ_P0067014 St3gal3 protein_coding protein_coding MGP_C3HHeJ_T0004358.1 MGP_C3HHeJ_G0003794.1 mouse_genomes_project 4 29995532 30007649 - Bach2os antisense antisense MGP_C3HHeJ_T0004359.1 MGP_C3HHeJ_G0003794.1 mouse_genomes_project 4 29998982 30007604 - Bach2os antisense antisense MGP_C3HHeJ_T0004360.1 MGP_C3HHeJ_G0003794.1 mouse_genomes_project 4 30001524 30007695 - Bach2os antisense antisense MGP_C3HHeJ_T0007848.1 MGP_C3HHeJ_G0006410.1 mouse_genomes_project 4 116562424 116563905 + Gm12951 lincRNA lincRNA MGP_C3HHeJ_T0014423.1 MGP_C3HHeJ_G0012527.1 mouse_genomes_project 4 69012544 69013655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064243.1 MGP_C3HHeJ_G0027734.1 mouse_genomes_project 4 2922402 2932422 - MGP_C3HHeJ_P0064243 Cyp7a1 protein_coding protein_coding MGP_C3HHeJ_T0064244.1 MGP_C3HHeJ_G0027734.1 mouse_genomes_project 4 2929595 2932424 - Cyp7a1 protein_coding processed_transcript MGP_C3HHeJ_T0007941.1 MGP_C3HHeJ_G0006477.1 mouse_genomes_project 4 152112693 152120661 + Gm13067 lincRNA lincRNA MGP_C3HHeJ_T0064194.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 197162 237532 + MGP_C3HHeJ_P0064194 Tgs1 protein_coding protein_coding MGP_C3HHeJ_T0064195.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 197237 206216 + Tgs1 protein_coding retained_intron MGP_C3HHeJ_T0064196.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 215878 220978 + Tgs1 protein_coding processed_transcript MGP_C3HHeJ_T0064197.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 220925 224352 + Tgs1 protein_coding retained_intron MGP_C3HHeJ_T0064198.1 MGP_C3HHeJ_G0027722.1 mouse_genomes_project 4 227438 236197 + Tgs1 protein_coding retained_intron MGP_C3HHeJ_T0098474.1 MGP_C3HHeJ_G0036679.1 mouse_genomes_project 4 100029860 100031081 + Gm12701 sense_intronic sense_intronic MGP_C3HHeJ_T0014605.1 MGP_C3HHeJ_G0012709.1 mouse_genomes_project 4 132498719 132499127 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014435.1 MGP_C3HHeJ_G0012539.1 mouse_genomes_project 4 73780513 73781166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098477.1 MGP_C3HHeJ_G0036682.1 mouse_genomes_project 4 136122402 136122992 - Gm15979 sense_intronic sense_intronic MGP_C3HHeJ_T0065094.1 MGP_C3HHeJ_G0027925.1 mouse_genomes_project 4 42031447 42032404 - MGP_C3HHeJ_P0065094 Olfr157 protein_coding protein_coding MGP_C3HHeJ_T0066081.1 MGP_C3HHeJ_G0028169.1 mouse_genomes_project 4 98682176 98687509 - MGP_C3HHeJ_P0066081 I0C0044D17Rik protein_coding protein_coding MGP_C3HHeJ_T0066082.1 MGP_C3HHeJ_G0028169.1 mouse_genomes_project 4 98683514 98684024 - MGP_C3HHeJ_P0066082 I0C0044D17Rik protein_coding protein_coding MGP_C3HHeJ_T0100611.1 MGP_C3HHeJ_G0038805.1 mouse_genomes_project 4 31201765 31201890 - Gm24341 snoRNA snoRNA MGP_C3HHeJ_T0068510.1 MGP_C3HHeJ_G0028708.1 mouse_genomes_project 4 140063316 140073936 - MGP_C3HHeJ_P0068510 Nbl1 protein_coding protein_coding MGP_C3HHeJ_T0068511.1 MGP_C3HHeJ_G0028708.1 mouse_genomes_project 4 140064239 140073048 - Nbl1 protein_coding processed_transcript MGP_C3HHeJ_T0068512.1 MGP_C3HHeJ_G0028708.1 mouse_genomes_project 4 140073017 140073911 - Nbl1 protein_coding processed_transcript MGP_C3HHeJ_T0014622.1 MGP_C3HHeJ_G0012726.1 mouse_genomes_project 4 136458990 136459468 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014325.1 MGP_C3HHeJ_G0012429.1 mouse_genomes_project 4 29631178 29632243 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014551.1 MGP_C3HHeJ_G0012655.1 mouse_genomes_project 4 116451504 116451801 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069538.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287508 158292580 + MGP_C3HHeJ_P0069538 Ube2j2 protein_coding protein_coding MGP_C3HHeJ_T0069539.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287511 158294980 + Ube2j2 protein_coding processed_transcript MGP_C3HHeJ_T0069540.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287557 158303865 + MGP_C3HHeJ_P0069540 Ube2j2 protein_coding protein_coding MGP_C3HHeJ_T0069541.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158287647 158295144 + Ube2j2 protein_coding retained_intron MGP_C3HHeJ_T0069542.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158292475 158303832 + MGP_C3HHeJ_P0069542 Ube2j2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069543.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158301612 158302863 + Ube2j2 protein_coding retained_intron MGP_C3HHeJ_T0069544.1 MGP_C3HHeJ_G0028941.1 mouse_genomes_project 4 158302472 158304646 + Ube2j2 protein_coding processed_transcript MGP_C3HHeJ_T0065567.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61076851 61095752 - MGP_C3HHeJ_P0065567 Zfp37 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065568.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61076851 61095752 - MGP_C3HHeJ_P0065568 Zfp37 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065569.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61076855 61095752 - MGP_C3HHeJ_P0065569 Zfp37 protein_coding protein_coding MGP_C3HHeJ_T0065570.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61079853 61095508 - Zfp37 protein_coding processed_transcript MGP_C3HHeJ_T0065571.1 MGP_C3HHeJ_G0028045.1 mouse_genomes_project 4 61079904 61095195 - Zfp37 protein_coding processed_transcript MGP_C3HHeJ_T0100652.1 MGP_C3HHeJ_G0038846.1 mouse_genomes_project 4 94234455 94234556 + Gm22804 snoRNA snoRNA MGP_C3HHeJ_T0069415.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157815980 157890148 + MGP_C3HHeJ_P0069415 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069416.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157815983 157890148 + MGP_C3HHeJ_P0069416 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069417.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157815989 157890148 + MGP_C3HHeJ_P0069417 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069418.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157817530 157872555 + MGP_C3HHeJ_P0069418 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069419.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157851334 157886049 + MGP_C3HHeJ_P0069419 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069420.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157851508 157870714 + Gnb1 protein_coding retained_intron MGP_C3HHeJ_T0069421.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157856474 157890146 + MGP_C3HHeJ_P0069421 Gnb1 protein_coding protein_coding MGP_C3HHeJ_T0069422.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157872395 157886118 + Gnb1 protein_coding retained_intron MGP_C3HHeJ_T0069423.1 MGP_C3HHeJ_G0028917.1 mouse_genomes_project 4 157884136 157888566 + Gnb1 protein_coding retained_intron MGP_C3HHeJ_T0066208.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102988017 103013180 + MGP_C3HHeJ_P0066208 Tctex1d1 protein_coding protein_coding MGP_C3HHeJ_T0066209.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102994104 103013410 + MGP_C3HHeJ_P0066209 Tctex1d1 protein_coding protein_coding MGP_C3HHeJ_T0066210.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102996327 103014431 + MGP_C3HHeJ_P0066210 Tctex1d1 protein_coding protein_coding MGP_C3HHeJ_T0066211.1 MGP_C3HHeJ_G0028198.1 mouse_genomes_project 4 102999559 103000626 + Tctex1d1 protein_coding processed_transcript MGP_C3HHeJ_T0068611.1 MGP_C3HHeJ_G0028732.1 mouse_genomes_project 4 142125587 142130984 + MGP_C3HHeJ_P0068611 Mfap2 protein_coding protein_coding MGP_C3HHeJ_T0068612.1 MGP_C3HHeJ_G0028732.1 mouse_genomes_project 4 142125806 142130182 + Mfap2 protein_coding processed_transcript MGP_C3HHeJ_T0068613.1 MGP_C3HHeJ_G0028732.1 mouse_genomes_project 4 142125813 142131154 + MGP_C3HHeJ_P0068613 Mfap2 protein_coding protein_coding MGP_C3HHeJ_T0068140.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134864334 134876599 - MGP_C3HHeJ_P0068140 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068141.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134864334 134877255 - MGP_C3HHeJ_P0068141 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068142.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134864335 134876613 - MGP_C3HHeJ_P0068142 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068143.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134867866 134876585 - MGP_C3HHeJ_P0068143 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068144.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134868680 134876610 - MGP_C3HHeJ_P0068144 Pdik1l protein_coding protein_coding MGP_C3HHeJ_T0068145.1 MGP_C3HHeJ_G0028618.1 mouse_genomes_project 4 134872930 134876585 - Pdik1l protein_coding processed_transcript MGP_C3HHeJ_T0066105.1 MGP_C3HHeJ_G0028172.1 mouse_genomes_project 4 98913724 98920838 + MGP_C3HHeJ_P0066105 Angptl3 protein_coding protein_coding MGP_C3HHeJ_T0066106.1 MGP_C3HHeJ_G0028172.1 mouse_genomes_project 4 98915949 98920732 + Angptl3 protein_coding processed_transcript MGP_C3HHeJ_T0066107.1 MGP_C3HHeJ_G0028172.1 mouse_genomes_project 4 98915973 98928884 + Angptl3 protein_coding processed_transcript MGP_C3HHeJ_T0066739.1 MGP_C3HHeJ_G0028307.1 mouse_genomes_project 4 116260181 116263727 + MGP_C3HHeJ_P0066739 Kncn protein_coding protein_coding MGP_C3HHeJ_T0066740.1 MGP_C3HHeJ_G0028307.1 mouse_genomes_project 4 116261648 116265289 + Kncn protein_coding processed_transcript MGP_C3HHeJ_T0065768.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81629255 81853637 - MGP_C3HHeJ_P0065768 Nfib protein_coding protein_coding MGP_C3HHeJ_T0065769.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81659345 81854187 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065770.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81661114 81854187 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065771.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81685056 81854641 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065772.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81844872 81854656 - Nfib protein_coding retained_intron MGP_C3HHeJ_T0065773.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81847209 82082398 - MGP_C3HHeJ_P0065773 Nfib protein_coding protein_coding MGP_C3HHeJ_T0065774.1 MGP_C3HHeJ_G0028094.1 mouse_genomes_project 4 81847432 81848205 - Nfib protein_coding processed_transcript MGP_C3HHeJ_T0014650.1 MGP_C3HHeJ_G0012754.1 mouse_genomes_project 4 150540141 150540962 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001372.1 MGP_C3HHeJ_G0001303.1 mouse_genomes_project 4 9450345 9527068 + TEC TEC MGP_C3HHeJ_T0067535.1 MGP_C3HHeJ_G0028494.1 mouse_genomes_project 4 127490827 127493825 - MGP_C3HHeJ_P0067535 Gjb4 protein_coding protein_coding MGP_C3HHeJ_T0067536.1 MGP_C3HHeJ_G0028494.1 mouse_genomes_project 4 127490827 127493825 - MGP_C3HHeJ_P0067536 Gjb4 protein_coding protein_coding MGP_C3HHeJ_T0066690.1 MGP_C3HHeJ_G0028292.1 mouse_genomes_project 4 115382153 115407413 - MGP_C3HHeJ_P0066690 Cyp4x1 protein_coding protein_coding MGP_C3HHeJ_T0064701.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38595779 38617196 - MGP_C3HHeJ_P0064701 Aptx protein_coding protein_coding MGP_C3HHeJ_T0064702.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38595779 38617476 - MGP_C3HHeJ_P0064702 Aptx protein_coding protein_coding MGP_C3HHeJ_T0064703.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38598337 38617444 - MGP_C3HHeJ_P0064703 Aptx protein_coding protein_coding MGP_C3HHeJ_T0064704.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38599454 38617469 - MGP_C3HHeJ_P0064704 Aptx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064705.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38604261 38608789 - Aptx protein_coding processed_transcript MGP_C3HHeJ_T0064706.1 MGP_C3HHeJ_G0027843.1 mouse_genomes_project 4 38609301 38616998 - MGP_C3HHeJ_P0064706 Aptx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067313.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123739014 123768758 + Rhbdl2 protein_coding processed_transcript MGP_C3HHeJ_T0067314.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123739015 123795061 + MGP_C3HHeJ_P0067314 Rhbdl2 protein_coding protein_coding MGP_C3HHeJ_T0067315.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123750827 123767401 + Rhbdl2 protein_coding processed_transcript MGP_C3HHeJ_T0067316.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123767173 123795061 + MGP_C3HHeJ_P0067316 Rhbdl2 protein_coding protein_coding MGP_C3HHeJ_T0067317.1 MGP_C3HHeJ_G0028441.1 mouse_genomes_project 4 123770674 123773643 + Rhbdl2 protein_coding processed_transcript MGP_C3HHeJ_T0067633.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129535212 129565519 - MGP_C3HHeJ_P0067633 Rbbp4 protein_coding protein_coding MGP_C3HHeJ_T0067634.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129537628 129564793 - Rbbp4 protein_coding processed_transcript MGP_C3HHeJ_T0067635.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129553466 129565398 - Rbbp4 protein_coding retained_intron MGP_C3HHeJ_T0067636.1 MGP_C3HHeJ_G0028515.1 mouse_genomes_project 4 129557285 129565232 - MGP_C3HHeJ_P0067636 Rbbp4 protein_coding protein_coding MGP_C3HHeJ_T0064202.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 491013 496238 - MGP_C3HHeJ_P0064202 Rps20 protein_coding protein_coding MGP_C3HHeJ_T0064203.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 494163 495806 - Rps20 protein_coding retained_intron MGP_C3HHeJ_T0064204.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 494166 496061 - Rps20 protein_coding retained_intron MGP_C3HHeJ_T0064205.1 MGP_C3HHeJ_G0027724.1 mouse_genomes_project 4 494194 496059 - MGP_C3HHeJ_P0064205 Rps20 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017810.1 MGP_C3HHeJ_G0015298.1 mouse_genomes_project 4 22102725 22108552 - C230012O17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017811.1 MGP_C3HHeJ_G0015298.1 mouse_genomes_project 4 22104265 22109019 - C230012O17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017812.1 MGP_C3HHeJ_G0015298.1 mouse_genomes_project 4 22108307 22109385 - C230012O17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0007857.1 MGP_C3HHeJ_G0006419.1 mouse_genomes_project 4 124316703 124322842 - 4933435F18Rik lincRNA lincRNA MGP_C3HHeJ_T0007858.1 MGP_C3HHeJ_G0006419.1 mouse_genomes_project 4 124321739 124322801 - 4933435F18Rik lincRNA lincRNA MGP_C3HHeJ_T0014447.1 MGP_C3HHeJ_G0012551.1 mouse_genomes_project 4 75984853 75985090 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068156.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134988681 135012334 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0068157.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134988718 135006091 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0068158.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134989593 135005288 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0068159.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134989827 135019753 + MGP_C3HHeJ_P0068159 Pafah2 protein_coding protein_coding MGP_C3HHeJ_T0068160.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134995928 134998082 + MGP_C3HHeJ_P0068160 Pafah2 protein_coding protein_coding MGP_C3HHeJ_T0068161.1 MGP_C3HHeJ_G0028623.1 mouse_genomes_project 4 134995986 135016779 + Pafah2 protein_coding processed_transcript MGP_C3HHeJ_T0069144.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154268198 154299969 + MGP_C3HHeJ_P0069144 Plekhg5 protein_coding protein_coding MGP_C3HHeJ_T0069145.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154281297 154299973 + MGP_C3HHeJ_P0069145 Plekhg5 protein_coding protein_coding MGP_C3HHeJ_T0069146.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154281297 154299963 + MGP_C3HHeJ_P0069146 Plekhg5 protein_coding protein_coding MGP_C3HHeJ_T0069147.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154289072 154290766 + Plekhg5 protein_coding retained_intron MGP_C3HHeJ_T0069148.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154292208 154299967 + Plekhg5 protein_coding retained_intron MGP_C3HHeJ_T0069149.1 MGP_C3HHeJ_G0028873.1 mouse_genomes_project 4 154292301 154292782 + Plekhg5 protein_coding retained_intron MGP_C3HHeJ_T0014621.1 MGP_C3HHeJ_G0012725.1 mouse_genomes_project 4 136095609 136096077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068453.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139157976 139170989 + MGP_C3HHeJ_P0068453 Sh2d5 protein_coding protein_coding MGP_C3HHeJ_T0068454.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139157986 139166949 + MGP_C3HHeJ_P0068454 Sh2d5 protein_coding protein_coding MGP_C3HHeJ_T0068455.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139159214 139165359 + Sh2d5 protein_coding processed_transcript MGP_C3HHeJ_T0068457.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139159255 139170989 + MGP_C3HHeJ_P0068457 Sh2d5 protein_coding protein_coding MGP_C3HHeJ_T0068458.1 MGP_C3HHeJ_G0028688.1 mouse_genomes_project 4 139166405 139168768 + Sh2d5 protein_coding retained_intron MGP_C3HHeJ_T0014417.1 MGP_C3HHeJ_G0012521.1 mouse_genomes_project 4 65754007 65754482 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068712.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967036 142971525 + Casp9 protein_coding processed_transcript MGP_C3HHeJ_T0068713.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967134 142978107 + MGP_C3HHeJ_P0068713 Casp9 protein_coding protein_coding MGP_C3HHeJ_T0068714.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967268 142970012 + Casp9 protein_coding processed_transcript MGP_C3HHeJ_T0068715.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142967279 142988625 + MGP_C3HHeJ_P0068715 Casp9 protein_coding protein_coding MGP_C3HHeJ_T0068716.1 MGP_C3HHeJ_G0028756.1 mouse_genomes_project 4 142987495 142988655 + Casp9 protein_coding processed_transcript MGP_C3HHeJ_T0014327.1 MGP_C3HHeJ_G0012431.1 mouse_genomes_project 4 30097944 30098104 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010510.1 MGP_C3HHeJ_G0008643.1 mouse_genomes_project 4 57113171 57113258 - Mir3095 miRNA miRNA MGP_C3HHeJ_T0014631.1 MGP_C3HHeJ_G0012735.1 mouse_genomes_project 4 138216722 138217081 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064620.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32112933 32158941 - MGP_C3HHeJ_P0064620 Orc3 protein_coding protein_coding MGP_C3HHeJ_T0064621.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32112933 32158910 - MGP_C3HHeJ_P0064621 Orc3 protein_coding protein_coding MGP_C3HHeJ_T0064622.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32113702 32141881 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064623.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32114523 32119100 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064624.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32119846 32158908 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064625.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32135532 32138195 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064626.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32136058 32158890 - MGP_C3HHeJ_P0064626 Orc3 protein_coding protein_coding MGP_C3HHeJ_T0064627.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32141831 32158900 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064628.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32141919 32158906 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0064629.1 MGP_C3HHeJ_G0027825.1 mouse_genomes_project 4 32142505 32158901 - Orc3 protein_coding processed_transcript MGP_C3HHeJ_T0014266.1 MGP_C3HHeJ_G0012370.1 mouse_genomes_project 4 13301996 13303216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010527.1 MGP_C3HHeJ_G0008660.1 mouse_genomes_project 4 118068707 118068781 + Gm25559 miRNA miRNA MGP_C3HHeJ_T0068532.1 MGP_C3HHeJ_G0028712.1 mouse_genomes_project 4 140302314 140310108 + MGP_C3HHeJ_P0068532 Akr7a5 protein_coding protein_coding MGP_C3HHeJ_T0068533.1 MGP_C3HHeJ_G0028712.1 mouse_genomes_project 4 140308261 140309090 + Akr7a5 protein_coding processed_transcript MGP_C3HHeJ_T0014310.1 MGP_C3HHeJ_G0012414.1 mouse_genomes_project 4 25309687 25310710 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066697.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908491 115912345 + MGP_C3HHeJ_P0066697 protein_coding protein_coding MGP_C3HHeJ_T0066698.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908491 115968702 + MGP_C3HHeJ_P0066698 protein_coding protein_coding MGP_C3HHeJ_T0066701.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908526 115918821 + MGP_C3HHeJ_P0066701 protein_coding protein_coding MGP_C3HHeJ_T0066703.1 MGP_C3HHeJ_G0028298.1 mouse_genomes_project 4 115908540 115968700 + MGP_C3HHeJ_P0066703 protein_coding protein_coding MGP_C3HHeJ_T0099399.1 MGP_C3HHeJ_G0037593.1 mouse_genomes_project 4 134427974 134428074 - Gm22523 snRNA snRNA MGP_C3HHeJ_T0100634.1 MGP_C3HHeJ_G0038828.1 mouse_genomes_project 4 55540892 55541018 + Gm22300 snoRNA snoRNA MGP_C3HHeJ_T0007911.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328282 136331826 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0007912.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328401 136330113 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0007913.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328445 136330113 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0007914.1 MGP_C3HHeJ_G0006451.1 mouse_genomes_project 4 136328880 136329613 + 1700029M20Rik lincRNA lincRNA MGP_C3HHeJ_T0066389.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486558 107536537 + MGP_C3HHeJ_P0066389 Ndc1 protein_coding protein_coding MGP_C3HHeJ_T0066390.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486654 107534524 + MGP_C3HHeJ_P0066390 Ndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066391.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486689 107536514 + MGP_C3HHeJ_P0066391 Ndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066392.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107486826 107531341 + MGP_C3HHeJ_P0066392 Ndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066393.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107501558 107507247 + Ndc1 protein_coding processed_transcript MGP_C3HHeJ_T0066394.1 MGP_C3HHeJ_G0028235.1 mouse_genomes_project 4 107501935 107510754 + Ndc1 protein_coding retained_intron MGP_C3HHeJ_T0067591.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129315389 129321470 + MGP_C3HHeJ_P0067591 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0067592.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129315415 129321470 + MGP_C3HHeJ_P0067592 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0067593.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129315442 129321361 + MGP_C3HHeJ_P0067593 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0067594.1 MGP_C3HHeJ_G0028508.1 mouse_genomes_project 4 129316710 129320388 + MGP_C3HHeJ_P0067594 Tmem54 protein_coding protein_coding MGP_C3HHeJ_T0014550.1 MGP_C3HHeJ_G0012654.1 mouse_genomes_project 4 116069050 116070099 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010552.1 MGP_C3HHeJ_G0008685.1 mouse_genomes_project 4 136208865 136208994 - Gm25317 miRNA miRNA MGP_C3HHeJ_T0097906.1 MGP_C3HHeJ_G0036118.1 mouse_genomes_project 4 130136907 130138550 + pseudogene pseudogene MGP_C3HHeJ_T0064696.1 MGP_C3HHeJ_G0027840.1 mouse_genomes_project 4 38168283 38178534 - MGP_C3HHeJ_P0064696 Topors protein_coding protein_coding MGP_C3HHeJ_T0004480.1 MGP_C3HHeJ_G0003887.1 mouse_genomes_project 4 135977323 135979499 + Gm12984 antisense antisense MGP_C3HHeJ_T0017833.1 MGP_C3HHeJ_G0015312.1 mouse_genomes_project 4 71319054 71333021 + C630043F03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0068032.1 MGP_C3HHeJ_G0028597.1 mouse_genomes_project 4 134139468 134141004 - MGP_C3HHeJ_P0068032 Sfn protein_coding protein_coding MGP_C3HHeJ_T0099367.1 MGP_C3HHeJ_G0037561.1 mouse_genomes_project 4 98218992 98219082 - Gm24960 snRNA snRNA MGP_C3HHeJ_T0068376.1 MGP_C3HHeJ_G0028678.1 mouse_genomes_project 4 138247580 138264256 - MGP_C3HHeJ_P0068376 Cela3b protein_coding protein_coding MGP_C3HHeJ_T0068377.1 MGP_C3HHeJ_G0028678.1 mouse_genomes_project 4 138247589 138249371 - Cela3b protein_coding processed_transcript MGP_C3HHeJ_T0065986.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94673087 94712797 - MGP_C3HHeJ_P0065986 Mysm1 protein_coding protein_coding MGP_C3HHeJ_T0065987.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94673110 94684319 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065988.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94678106 94684450 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065989.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94695305 94712772 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065990.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94696532 94712739 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065991.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94696572 94701598 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065992.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94696664 94712775 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065993.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94701225 94712750 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0065994.1 MGP_C3HHeJ_G0028149.1 mouse_genomes_project 4 94703391 94712772 - Mysm1 protein_coding processed_transcript MGP_C3HHeJ_T0097907.1 MGP_C3HHeJ_G0036119.1 mouse_genomes_project 4 142693801 142695511 + pseudogene pseudogene MGP_C3HHeJ_T0007859.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124401154 124441834 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0007860.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124401154 124405622 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0007861.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124440440 124476287 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0007862.1 MGP_C3HHeJ_G0006420.1 mouse_genomes_project 4 124440773 124441824 - 1700057H15Rik lincRNA lincRNA MGP_C3HHeJ_T0065841.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84335131 84590486 + MGP_C3HHeJ_P0065841 Cntln protein_coding protein_coding MGP_C3HHeJ_T0065842.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84335226 84408670 + MGP_C3HHeJ_P0065842 Cntln protein_coding protein_coding MGP_C3HHeJ_T0065843.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84335287 84590482 + MGP_C3HHeJ_P0065843 Cntln protein_coding protein_coding MGP_C3HHeJ_T0065844.1 MGP_C3HHeJ_G0028103.1 mouse_genomes_project 4 84554003 84590483 + MGP_C3HHeJ_P0065844 Cntln protein_coding protein_coding MGP_C3HHeJ_T0007851.1 MGP_C3HHeJ_G0006413.1 mouse_genomes_project 4 119520480 119521306 - Gm12862 lincRNA lincRNA MGP_C3HHeJ_T0014568.1 MGP_C3HHeJ_G0012672.1 mouse_genomes_project 4 119872140 119873197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065082.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41862917 41879785 + protein_coding processed_transcript MGP_C3HHeJ_T0065083.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41862981 41883734 + MGP_C3HHeJ_P0065083 protein_coding protein_coding MGP_C3HHeJ_T0065084.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41863215 41878988 + MGP_C3HHeJ_P0065084 protein_coding protein_coding MGP_C3HHeJ_T0065085.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41863276 41874664 + protein_coding processed_transcript MGP_C3HHeJ_T0065086.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41867811 41879577 + protein_coding processed_transcript MGP_C3HHeJ_T0065087.1 MGP_C3HHeJ_G0027919.1 mouse_genomes_project 4 41883061 41883868 + protein_coding processed_transcript MGP_C3HHeJ_T0004482.1 MGP_C3HHeJ_G0003889.1 mouse_genomes_project 4 136750152 136750560 - Gm24362 antisense antisense MGP_C3HHeJ_T0066699.1 MGP_C3HHeJ_G0028299.1 mouse_genomes_project 4 115908494 115919240 + MGP_C3HHeJ_P0066699 protein_coding protein_coding MGP_C3HHeJ_T0066704.1 MGP_C3HHeJ_G0028299.1 mouse_genomes_project 4 115908553 115918799 + protein_coding processed_transcript MGP_C3HHeJ_T0066282.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723290 106725761 + MGP_C3HHeJ_P0066282 Pars2 protein_coding protein_coding MGP_C3HHeJ_T0066283.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723319 106727502 + MGP_C3HHeJ_P0066283 Pars2 protein_coding protein_coding MGP_C3HHeJ_T0066284.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723324 106725088 + Pars2 protein_coding processed_transcript MGP_C3HHeJ_T0066285.1 MGP_C3HHeJ_G0028219.1 mouse_genomes_project 4 106723327 106727504 + MGP_C3HHeJ_P0066285 Pars2 protein_coding protein_coding MGP_C3HHeJ_T0014640.1 MGP_C3HHeJ_G0012744.1 mouse_genomes_project 4 144722417 144725929 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065901.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87382864 87652727 - MGP_C3HHeJ_P0065901 Mllt3 protein_coding protein_coding MGP_C3HHeJ_T0065902.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87386635 87418898 - MGP_C3HHeJ_P0065902 Mllt3 protein_coding protein_coding MGP_C3HHeJ_T0065903.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87386672 87418869 - MGP_C3HHeJ_P0065903 Mllt3 protein_coding protein_coding MGP_C3HHeJ_T0065904.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87404498 87652912 - Mllt3 protein_coding processed_transcript MGP_C3HHeJ_T0065905.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87445579 87487687 - Mllt3 protein_coding processed_transcript MGP_C3HHeJ_T0065906.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87450217 87651384 - Mllt3 protein_coding retained_intron MGP_C3HHeJ_T0065907.1 MGP_C3HHeJ_G0028114.1 mouse_genomes_project 4 87453882 87651384 - MGP_C3HHeJ_P0065907 Mllt3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067161.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120082396 120123771 + MGP_C3HHeJ_P0067161 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067162.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085053 120180894 + MGP_C3HHeJ_P0067162 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067163.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085077 120138691 + MGP_C3HHeJ_P0067163 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067164.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085080 120180894 + MGP_C3HHeJ_P0067164 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067165.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085084 120151752 + Foxj3 protein_coding retained_intron MGP_C3HHeJ_T0067166.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085090 120138700 + MGP_C3HHeJ_P0067166 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067167.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085099 120112349 + Foxj3 protein_coding retained_intron MGP_C3HHeJ_T0067168.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085171 120123798 + MGP_C3HHeJ_P0067168 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067169.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120085914 120123899 + MGP_C3HHeJ_P0067169 Foxj3 protein_coding protein_coding MGP_C3HHeJ_T0067170.1 MGP_C3HHeJ_G0028400.1 mouse_genomes_project 4 120170270 120172341 + Foxj3 protein_coding processed_transcript MGP_C3HHeJ_T0007791.1 MGP_C3HHeJ_G0006366.1 mouse_genomes_project 4 81270789 81272686 - Gm12914 lincRNA lincRNA MGP_C3HHeJ_T0065385.1 MGP_C3HHeJ_G0027994.1 mouse_genomes_project 4 51402196 51403256 - MGP_C3HHeJ_P0065385 Olfr273 protein_coding protein_coding MGP_C3HHeJ_T0065386.1 MGP_C3HHeJ_G0027994.1 mouse_genomes_project 4 51402241 51405149 - MGP_C3HHeJ_P0065386 Olfr273 protein_coding protein_coding MGP_C3HHeJ_T0069330.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220902 157226898 - MGP_C3HHeJ_P0069330 Tnfrsf14 protein_coding protein_coding MGP_C3HHeJ_T0069331.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220902 157226773 - MGP_C3HHeJ_P0069331 Tnfrsf14 protein_coding protein_coding MGP_C3HHeJ_T0069332.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220936 157226742 - MGP_C3HHeJ_P0069332 Tnfrsf14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069333.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157220953 157227248 - MGP_C3HHeJ_P0069333 Tnfrsf14 protein_coding protein_coding MGP_C3HHeJ_T0069334.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157223164 157227248 - Tnfrsf14 protein_coding processed_transcript MGP_C3HHeJ_T0069335.1 MGP_C3HHeJ_G0028904.1 mouse_genomes_project 4 157225323 157227259 - Tnfrsf14 protein_coding processed_transcript MGP_C3HHeJ_T0014444.1 MGP_C3HHeJ_G0012548.1 mouse_genomes_project 4 75559610 75560549 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014645.1 MGP_C3HHeJ_G0012749.1 mouse_genomes_project 4 147128637 147129025 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010559.1 MGP_C3HHeJ_G0008692.1 mouse_genomes_project 4 140664024 140664094 + Mir7020 miRNA miRNA MGP_C3HHeJ_T0065298.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45717730 45778638 + MGP_C3HHeJ_P0065298 Tgfbr1 protein_coding protein_coding MGP_C3HHeJ_T0065299.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45717735 45781435 + MGP_C3HHeJ_P0065299 Tgfbr1 protein_coding protein_coding MGP_C3HHeJ_T0065300.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45718021 45725737 + Tgfbr1 protein_coding processed_transcript MGP_C3HHeJ_T0065301.1 MGP_C3HHeJ_G0027967.1 mouse_genomes_project 4 45751850 45777540 + MGP_C3HHeJ_P0065301 Tgfbr1 protein_coding protein_coding MGP_C3HHeJ_T0065102.1 MGP_C3HHeJ_G0027929.1 mouse_genomes_project 4 42192598 42194539 + MGP_C3HHeJ_P0065102 Ccin protein_coding protein_coding MGP_C3HHeJ_T0065996.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312120 95689491 + MGP_C3HHeJ_P0065996 Fggy protein_coding protein_coding MGP_C3HHeJ_T0065997.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312124 95603562 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0065998.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312132 95689487 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0065999.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95312133 95350632 + MGP_C3HHeJ_P0065999 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066000.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95333940 95583281 + MGP_C3HHeJ_P0066000 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066001.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95334003 95354029 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066002.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95334008 95350638 + MGP_C3HHeJ_P0066002 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066003.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95334013 95531263 + MGP_C3HHeJ_P0066003 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066004.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95340067 95689356 + MGP_C3HHeJ_P0066004 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066005.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95340067 95574070 + MGP_C3HHeJ_P0066005 Fggy protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066006.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95341738 95496361 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066007.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95376495 95641094 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066008.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95376502 95496418 + MGP_C3HHeJ_P0066008 Fggy protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066009.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95390666 95583694 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066010.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95495903 95531272 + Fggy protein_coding processed_transcript MGP_C3HHeJ_T0066011.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95531335 95689491 + MGP_C3HHeJ_P0066011 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066012.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95583689 95689356 + MGP_C3HHeJ_P0066012 Fggy protein_coding protein_coding MGP_C3HHeJ_T0066013.1 MGP_C3HHeJ_G0028151.1 mouse_genomes_project 4 95612533 95689486 + MGP_C3HHeJ_P0066013 Fggy protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014366.1 MGP_C3HHeJ_G0012470.1 mouse_genomes_project 4 44596327 44598056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004353.1 MGP_C3HHeJ_G0003789.1 mouse_genomes_project 4 11913433 11922839 + Gm11844 antisense antisense MGP_C3HHeJ_T0065922.1 MGP_C3HHeJ_G0028119.1 mouse_genomes_project 4 88188941 88189511 - MGP_C3HHeJ_P0065922 Ifna14 protein_coding protein_coding MGP_C3HHeJ_T0065923.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88242658 88251433 - MGP_C3HHeJ_P0065923 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065924.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88242658 88251385 - MGP_C3HHeJ_P0065924 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065925.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88243507 88251585 - MGP_C3HHeJ_P0065925 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065926.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88244236 88251316 - MGP_C3HHeJ_P0065926 C87499 protein_coding protein_coding MGP_C3HHeJ_T0065927.1 MGP_C3HHeJ_G0028120.1 mouse_genomes_project 4 88244526 88251365 - MGP_C3HHeJ_P0065927 C87499 protein_coding protein_coding MGP_C3HHeJ_T0014581.1 MGP_C3HHeJ_G0012685.1 mouse_genomes_project 4 122235317 122235649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011464.1 MGP_C3HHeJ_G0009597.1 mouse_genomes_project 4 31987694 31987799 + Gm23466 misc_RNA misc_RNA MGP_C3HHeJ_T0099350.1 MGP_C3HHeJ_G0037544.1 mouse_genomes_project 4 50327723 50327888 - Gm22042 snRNA snRNA MGP_C3HHeJ_T0011482.1 MGP_C3HHeJ_G0009615.1 mouse_genomes_project 4 109354760 109355034 - Gm23743 misc_RNA misc_RNA MGP_C3HHeJ_T0066365.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107360967 107389166 + MGP_C3HHeJ_P0066365 Hspb11 protein_coding protein_coding MGP_C3HHeJ_T0066366.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107361272 107372507 + Hspb11 protein_coding processed_transcript MGP_C3HHeJ_T0066367.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107361277 107389267 + MGP_C3HHeJ_P0066367 Hspb11 protein_coding protein_coding MGP_C3HHeJ_T0066368.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107361299 107389257 + MGP_C3HHeJ_P0066368 Hspb11 protein_coding protein_coding MGP_C3HHeJ_T0066369.1 MGP_C3HHeJ_G0028232.1 mouse_genomes_project 4 107369706 107389261 + Hspb11 protein_coding processed_transcript MGP_C3HHeJ_T0014350.1 MGP_C3HHeJ_G0012454.1 mouse_genomes_project 4 37733315 37734234 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014513.1 MGP_C3HHeJ_G0012617.1 mouse_genomes_project 4 101821021 101822042 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067072.1 MGP_C3HHeJ_G0028374.1 mouse_genomes_project 4 119234115 119235063 + MGP_C3HHeJ_P0067072 Olfr1340 protein_coding protein_coding MGP_C3HHeJ_T0001381.1 MGP_C3HHeJ_G0001312.1 mouse_genomes_project 4 99444751 99449428 + TEC TEC MGP_C3HHeJ_T0069580.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158533779 - Agrn protein_coding retained_intron MGP_C3HHeJ_T0069581.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158550574 - MGP_C3HHeJ_P0069581 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069582.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158550574 - MGP_C3HHeJ_P0069582 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069583.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529982 158550574 - MGP_C3HHeJ_P0069583 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069584.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158529986 158550780 - Agrn protein_coding retained_intron MGP_C3HHeJ_T0069585.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158530470 158562147 - MGP_C3HHeJ_P0069585 Agrn protein_coding protein_coding MGP_C3HHeJ_T0069586.1 MGP_C3HHeJ_G0028949.1 mouse_genomes_project 4 158536987 158538419 - Agrn protein_coding processed_transcript MGP_C3HHeJ_T0067080.1 MGP_C3HHeJ_G0028382.1 mouse_genomes_project 4 119450132 119451080 - MGP_C3HHeJ_P0067080 protein_coding protein_coding MGP_C3HHeJ_T0068316.1 MGP_C3HHeJ_G0028660.1 mouse_genomes_project 4 136999069 137024227 + Tcea3 protein_coding processed_transcript MGP_C3HHeJ_T0068317.1 MGP_C3HHeJ_G0028660.1 mouse_genomes_project 4 136999292 137027854 + MGP_C3HHeJ_P0068317 Tcea3 protein_coding protein_coding MGP_C3HHeJ_T0068318.1 MGP_C3HHeJ_G0028660.1 mouse_genomes_project 4 136999313 137016757 + MGP_C3HHeJ_P0068318 Tcea3 protein_coding protein_coding MGP_C3HHeJ_T0014652.1 MGP_C3HHeJ_G0012756.1 mouse_genomes_project 4 151159997 151163396 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099354.1 MGP_C3HHeJ_G0037548.1 mouse_genomes_project 4 62504736 62504843 - Gm24448 snRNA snRNA MGP_C3HHeJ_T0068502.1 MGP_C3HHeJ_G0028704.1 mouse_genomes_project 4 139861671 139880123 - MGP_C3HHeJ_P0068502 Otud3 protein_coding protein_coding MGP_C3HHeJ_T0065136.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42536793 42597067 + MGP_C3HHeJ_P0065136 Melk protein_coding protein_coding MGP_C3HHeJ_T0065137.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42538574 42563333 + MGP_C3HHeJ_P0065137 Melk protein_coding protein_coding MGP_C3HHeJ_T0065138.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42539475 42561908 + Melk protein_coding processed_transcript MGP_C3HHeJ_T0065139.1 MGP_C3HHeJ_G0027933.1 mouse_genomes_project 4 42539475 42555355 + MGP_C3HHeJ_P0065139 Melk protein_coding protein_coding MGP_C3HHeJ_T0064671.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289226 33432434 - MGP_C3HHeJ_P0064671 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064672.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289985 34601910 - MGP_C3HHeJ_P0064672 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064673.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289985 33739947 - MGP_C3HHeJ_P0064673 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064674.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33289985 33432434 - MGP_C3HHeJ_P0064674 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064675.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33290422 33647007 - MGP_C3HHeJ_P0064675 Lingo2 protein_coding protein_coding MGP_C3HHeJ_T0064676.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 33647004 34601173 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064677.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34357384 34602431 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064678.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34360121 34601154 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064679.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34360366 34601176 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0064680.1 MGP_C3HHeJ_G0027836.1 mouse_genomes_project 4 34601786 34602434 - Lingo2 protein_coding processed_transcript MGP_C3HHeJ_T0068707.1 MGP_C3HHeJ_G0028753.1 mouse_genomes_project 4 142849643 142851392 - MGP_C3HHeJ_P0068707 protein_coding protein_coding MGP_C3HHeJ_T0014602.1 MGP_C3HHeJ_G0012706.1 mouse_genomes_project 4 129065578 129066582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064812.1 MGP_C3HHeJ_G0027869.1 mouse_genomes_project 4 39698995 39699750 - MGP_C3HHeJ_P0064812 Ccl27b protein_coding protein_coding MGP_C3HHeJ_T0007826.1 MGP_C3HHeJ_G0006394.1 mouse_genomes_project 4 101325722 101330395 + Gm12798 lincRNA lincRNA MGP_C3HHeJ_T0100658.1 MGP_C3HHeJ_G0038852.1 mouse_genomes_project 4 117610548 117610618 - Gm22980 snoRNA snoRNA MGP_C3HHeJ_T0001374.1 MGP_C3HHeJ_G0001305.1 mouse_genomes_project 4 19495300 19498893 + TEC TEC MGP_C3HHeJ_T0007712.1 MGP_C3HHeJ_G0006299.1 mouse_genomes_project 4 5994911 5997504 - Gm26548 lincRNA lincRNA MGP_C3HHeJ_T0067539.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128147688 128513597 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0067540.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128147872 128595516 + Csmd2 protein_coding retained_intron MGP_C3HHeJ_T0067541.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128147898 128742483 + MGP_C3HHeJ_P0067541 Csmd2 protein_coding protein_coding MGP_C3HHeJ_T0067543.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128650415 128673888 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0067544.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128694157 128703239 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0067545.1 MGP_C3HHeJ_G0028497.1 mouse_genomes_project 4 128722768 128727570 + Csmd2 protein_coding processed_transcript MGP_C3HHeJ_T0014558.1 MGP_C3HHeJ_G0012662.1 mouse_genomes_project 4 118012446 118012825 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066764.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116459501 116481257 + MGP_C3HHeJ_P0066764 Lrrc41 protein_coding protein_coding MGP_C3HHeJ_T0066765.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116459695 116467262 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066766.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116459777 116472743 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066767.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116461117 116472812 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066768.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116463621 116467260 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0066769.1 MGP_C3HHeJ_G0028313.1 mouse_genomes_project 4 116473695 116477523 + Lrrc41 protein_coding processed_transcript MGP_C3HHeJ_T0014304.1 MGP_C3HHeJ_G0012408.1 mouse_genomes_project 4 23656971 23657188 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065490.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56712258 56879689 - MGP_C3HHeJ_P0065490 Svep1 protein_coding protein_coding MGP_C3HHeJ_T0065491.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56814869 56879705 - Svep1 protein_coding processed_transcript MGP_C3HHeJ_T0065492.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56816230 56879952 - Svep1 protein_coding processed_transcript MGP_C3HHeJ_T0065493.1 MGP_C3HHeJ_G0028024.1 mouse_genomes_project 4 56849410 56879781 - Svep1 protein_coding processed_transcript MGP_C3HHeJ_T0069021.1 MGP_C3HHeJ_G0028848.1 mouse_genomes_project 4 151796822 151824915 - MGP_C3HHeJ_P0069021 Slc25a33 protein_coding protein_coding MGP_C3HHeJ_T0066898.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117548646 117569839 + MGP_C3HHeJ_P0066898 Ptch2 protein_coding protein_coding MGP_C3HHeJ_T0066899.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117548667 117569839 + MGP_C3HHeJ_P0066899 Ptch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066900.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117558481 117559899 + Ptch2 protein_coding retained_intron MGP_C3HHeJ_T0066901.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117558808 117562942 + MGP_C3HHeJ_P0066901 Ptch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066902.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117564661 117565515 + Ptch2 protein_coding retained_intron MGP_C3HHeJ_T0066903.1 MGP_C3HHeJ_G0028338.1 mouse_genomes_project 4 117567879 117570557 + Ptch2 protein_coding retained_intron MGP_C3HHeJ_T0064245.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020863 3052027 + MGP_C3HHeJ_P0064245 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064246.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020890 3051398 + MGP_C3HHeJ_P0064246 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064247.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020921 3029342 + Sdcbp protein_coding processed_transcript MGP_C3HHeJ_T0064248.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020922 3048854 + MGP_C3HHeJ_P0064248 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064249.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020925 3039165 + Sdcbp protein_coding processed_transcript MGP_C3HHeJ_T0064250.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020926 3040000 + MGP_C3HHeJ_P0064250 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064251.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3020926 3064152 + MGP_C3HHeJ_P0064251 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0064252.1 MGP_C3HHeJ_G0027735.1 mouse_genomes_project 4 3032054 3048738 + MGP_C3HHeJ_P0064252 Sdcbp protein_coding protein_coding MGP_C3HHeJ_T0068845.1 MGP_C3HHeJ_G0028814.1 mouse_genomes_project 4 149914987 149916405 + MGP_C3HHeJ_P0068845 Nppb protein_coding protein_coding MGP_C3HHeJ_T0066214.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103039158 103077332 - MGP_C3HHeJ_P0066214 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0066215.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042469 103077511 - Wdr78 protein_coding retained_intron MGP_C3HHeJ_T0066216.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042469 103120988 - MGP_C3HHeJ_P0066216 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0066217.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042473 103121244 - MGP_C3HHeJ_P0066217 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0066218.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042473 103120913 - MGP_C3HHeJ_P0066218 Wdr78 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066219.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103042505 103080130 - Wdr78 protein_coding retained_intron MGP_C3HHeJ_T0066220.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103043676 103046015 - Wdr78 protein_coding processed_transcript MGP_C3HHeJ_T0066221.1 MGP_C3HHeJ_G0028200.1 mouse_genomes_project 4 103087661 103093080 - MGP_C3HHeJ_P0066221 Wdr78 protein_coding protein_coding MGP_C3HHeJ_T0007844.1 MGP_C3HHeJ_G0006406.1 mouse_genomes_project 4 108793477 108797814 - Gm17354 lincRNA lincRNA MGP_C3HHeJ_T0014434.1 MGP_C3HHeJ_G0012538.1 mouse_genomes_project 4 73160590 73161386 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014399.1 MGP_C3HHeJ_G0012503.1 mouse_genomes_project 4 54080400 54080828 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066121.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99697760 99769525 - MGP_C3HHeJ_P0066121 Itgb3bp protein_coding protein_coding MGP_C3HHeJ_T0066122.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99698260 99840705 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066123.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99699689 99769431 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066124.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99704356 99769473 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066125.1 MGP_C3HHeJ_G0028177.1 mouse_genomes_project 4 99714319 99769429 - Itgb3bp protein_coding processed_transcript MGP_C3HHeJ_T0066166.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658145 101746344 + MGP_C3HHeJ_P0066166 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066167.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658145 101748029 + MGP_C3HHeJ_P0066167 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066168.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658145 101731035 + MGP_C3HHeJ_P0066168 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066169.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101658148 101676190 + MGP_C3HHeJ_P0066169 Lepr protein_coding protein_coding MGP_C3HHeJ_T0066170.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101704482 101714133 + Lepr protein_coding processed_transcript MGP_C3HHeJ_T0066171.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101706912 101717435 + Lepr protein_coding processed_transcript MGP_C3HHeJ_T0066172.1 MGP_C3HHeJ_G0028189.1 mouse_genomes_project 4 101727730 101730933 + Lepr protein_coding processed_transcript MGP_C3HHeJ_T0068487.1 MGP_C3HHeJ_G0028700.1 mouse_genomes_project 4 139735060 139741336 + MGP_C3HHeJ_P0068487 Pla2g2d protein_coding protein_coding MGP_C3HHeJ_T0068488.1 MGP_C3HHeJ_G0028700.1 mouse_genomes_project 4 139737221 139740453 + MGP_C3HHeJ_P0068488 Pla2g2d protein_coding protein_coding MGP_C3HHeJ_T0007802.1 MGP_C3HHeJ_G0006375.1 mouse_genomes_project 4 88728179 88766506 + Gm12603 lincRNA lincRNA MGP_C3HHeJ_T0007803.1 MGP_C3HHeJ_G0006375.1 mouse_genomes_project 4 88737726 88766609 + Gm12603 lincRNA lincRNA MGP_C3HHeJ_T0017825.1 MGP_C3HHeJ_G0015308.1 mouse_genomes_project 4 51352501 51369161 + 4930552N02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010502.1 MGP_C3HHeJ_G0008635.1 mouse_genomes_project 4 38936315 38936379 + Mir3094 miRNA miRNA MGP_C3HHeJ_T0065341.1 MGP_C3HHeJ_G0027978.1 mouse_genomes_project 4 47492132 47641383 + Plppr1 protein_coding retained_intron MGP_C3HHeJ_T0065342.1 MGP_C3HHeJ_G0027978.1 mouse_genomes_project 4 47492141 47783842 + MGP_C3HHeJ_P0065342 Plppr1 protein_coding protein_coding MGP_C3HHeJ_T0065343.1 MGP_C3HHeJ_G0027978.1 mouse_genomes_project 4 47492315 47739247 + Plppr1 protein_coding retained_intron MGP_C3HHeJ_T0014319.1 MGP_C3HHeJ_G0012423.1 mouse_genomes_project 4 26784800 26785308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066344.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107234055 107280549 - MGP_C3HHeJ_P0066344 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066345.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239165 107280368 - MGP_C3HHeJ_P0066345 Tceanc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066346.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239220 107280285 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0066347.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239428 107281105 - MGP_C3HHeJ_P0066347 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066348.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239472 107280284 - MGP_C3HHeJ_P0066348 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066349.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107239592 107281118 - MGP_C3HHeJ_P0066349 Tceanc2 protein_coding protein_coding MGP_C3HHeJ_T0066350.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107266342 107279853 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0066351.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107275008 107280210 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0066352.1 MGP_C3HHeJ_G0028228.1 mouse_genomes_project 4 107278617 107279670 - Tceanc2 protein_coding processed_transcript MGP_C3HHeJ_T0100661.1 MGP_C3HHeJ_G0038855.1 mouse_genomes_project 4 117612224 117612303 - Snord55 snoRNA snoRNA MGP_C3HHeJ_T0004548.1 MGP_C3HHeJ_G0003937.1 mouse_genomes_project 4 158179406 158180093 - Mxra8os antisense antisense MGP_C3HHeJ_T0100656.1 MGP_C3HHeJ_G0038850.1 mouse_genomes_project 4 106177102 106177215 - Gm26047 snoRNA snoRNA MGP_C3HHeJ_T0100683.1 MGP_C3HHeJ_G0038877.1 mouse_genomes_project 4 137829056 137829185 + Gm23834 snoRNA snoRNA MGP_C3HHeJ_T0067619.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129399932 129437245 + MGP_C3HHeJ_P0067619 Yars protein_coding protein_coding MGP_C3HHeJ_T0067620.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129400074 129407614 + Yars protein_coding retained_intron MGP_C3HHeJ_T0067621.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129407287 129427187 + MGP_C3HHeJ_P0067621 Yars protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067622.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129407406 129424264 + Yars protein_coding processed_transcript MGP_C3HHeJ_T0067623.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129425186 129427461 + Yars protein_coding retained_intron MGP_C3HHeJ_T0067624.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129428852 129433364 + Yars protein_coding retained_intron MGP_C3HHeJ_T0067625.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129429304 129436301 + Yars protein_coding processed_transcript MGP_C3HHeJ_T0067626.1 MGP_C3HHeJ_G0028512.1 mouse_genomes_project 4 129431394 129432572 + Yars protein_coding retained_intron MGP_C3HHeJ_T0001384.1 MGP_C3HHeJ_G0001315.1 mouse_genomes_project 4 119828415 119828849 - TEC TEC MGP_C3HHeJ_T0014476.1 MGP_C3HHeJ_G0012580.1 mouse_genomes_project 4 90067501 90068493 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068863.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150072543 150082916 + Mad2l2 protein_coding processed_transcript MGP_C3HHeJ_T0068864.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082306 150088208 + MGP_C3HHeJ_P0068864 Mad2l2 protein_coding protein_coding MGP_C3HHeJ_T0068865.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082848 150088207 + MGP_C3HHeJ_P0068865 Mad2l2 protein_coding protein_coding MGP_C3HHeJ_T0068866.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082886 150086542 + Mad2l2 protein_coding retained_intron MGP_C3HHeJ_T0068867.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150082919 150088771 + MGP_C3HHeJ_P0068867 Mad2l2 protein_coding protein_coding MGP_C3HHeJ_T0068868.1 MGP_C3HHeJ_G0028820.1 mouse_genomes_project 4 150087876 150088538 + Mad2l2 protein_coding retained_intron MGP_C3HHeJ_T0014441.1 MGP_C3HHeJ_G0012545.1 mouse_genomes_project 4 74518727 74519442 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066083.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98794397 98805868 + MGP_C3HHeJ_P0066083 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0066084.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98794466 98805868 + MGP_C3HHeJ_P0066084 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0066085.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98794551 98799177 + MGP_C3HHeJ_P0066085 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0066086.1 MGP_C3HHeJ_G0028170.1 mouse_genomes_project 4 98799003 98801788 + MGP_C3HHeJ_P0066086 Usp1 protein_coding protein_coding MGP_C3HHeJ_T0065376.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961007 51011735 + MGP_C3HHeJ_P0065376 Smc2 protein_coding protein_coding MGP_C3HHeJ_T0065377.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961007 51011735 + MGP_C3HHeJ_P0065377 Smc2 protein_coding protein_coding MGP_C3HHeJ_T0065378.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961016 50970575 + Smc2 protein_coding processed_transcript MGP_C3HHeJ_T0065379.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961030 50974986 + Smc2 protein_coding processed_transcript MGP_C3HHeJ_T0065380.1 MGP_C3HHeJ_G0027990.1 mouse_genomes_project 4 50961033 50982232 + MGP_C3HHeJ_P0065380 Smc2 protein_coding protein_coding MGP_C3HHeJ_T0066274.1 MGP_C3HHeJ_G0028215.1 mouse_genomes_project 4 106546178 106554978 - MGP_C3HHeJ_P0066274 Bsnd protein_coding protein_coding MGP_C3HHeJ_T0004462.1 MGP_C3HHeJ_G0003873.1 mouse_genomes_project 4 126201461 126203215 + Gm12946 antisense antisense MGP_C3HHeJ_T0014253.1 MGP_C3HHeJ_G0012357.1 mouse_genomes_project 4 11296799 11297240 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065273.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44868150 44900816 - MGP_C3HHeJ_P0065273 Coro2a protein_coding protein_coding MGP_C3HHeJ_T0065274.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44868156 44900834 - MGP_C3HHeJ_P0065274 Coro2a protein_coding protein_coding MGP_C3HHeJ_T0065275.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44868156 44928607 - MGP_C3HHeJ_P0065275 Coro2a protein_coding protein_coding MGP_C3HHeJ_T0065276.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44872471 44875711 - Coro2a protein_coding retained_intron MGP_C3HHeJ_T0065277.1 MGP_C3HHeJ_G0027961.1 mouse_genomes_project 4 44875909 44927341 - Coro2a protein_coding retained_intron MGP_C3HHeJ_T0014420.1 MGP_C3HHeJ_G0012524.1 mouse_genomes_project 4 67369233 67371278 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099363.1 MGP_C3HHeJ_G0037557.1 mouse_genomes_project 4 93360579 93360686 + Gm24796 snRNA snRNA MGP_C3HHeJ_T0068909.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573273 150575137 + MGP_C3HHeJ_P0068909 Masp2 protein_coding protein_coding MGP_C3HHeJ_T0068910.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573283 150586418 + MGP_C3HHeJ_P0068910 Masp2 protein_coding protein_coding MGP_C3HHeJ_T0068911.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573287 150581131 + Masp2 protein_coding retained_intron MGP_C3HHeJ_T0068912.1 MGP_C3HHeJ_G0028830.1 mouse_genomes_project 4 150573294 150575137 + Masp2 protein_coding retained_intron MGP_C3HHeJ_T0065782.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82267114 82432732 - MGP_C3HHeJ_P0065782 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065783.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82267121 82398582 - MGP_C3HHeJ_P0065783 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065784.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82267121 82432904 - MGP_C3HHeJ_P0065784 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065785.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82269758 82282961 - Frem1 protein_coding processed_transcript MGP_C3HHeJ_T0065786.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82284159 82293318 - Frem1 protein_coding retained_intron MGP_C3HHeJ_T0065787.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82305292 82310064 - Frem1 protein_coding retained_intron MGP_C3HHeJ_T0065788.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82307609 82340639 - MGP_C3HHeJ_P0065788 Frem1 protein_coding protein_coding MGP_C3HHeJ_T0065789.1 MGP_C3HHeJ_G0028097.1 mouse_genomes_project 4 82366920 82432904 - Frem1 protein_coding processed_transcript MGP_C3HHeJ_T0007933.1 MGP_C3HHeJ_G0006469.1 mouse_genomes_project 4 142479541 142482581 + Gm13074 lincRNA lincRNA MGP_C3HHeJ_T0100625.1 MGP_C3HHeJ_G0038819.1 mouse_genomes_project 4 50172180 50172289 + Gm23043 snoRNA snoRNA MGP_C3HHeJ_T0099414.1 MGP_C3HHeJ_G0037608.1 mouse_genomes_project 4 158376800 158376901 - Gm25982 snRNA snRNA MGP_C3HHeJ_T0014392.1 MGP_C3HHeJ_G0012496.1 mouse_genomes_project 4 53400420 53402007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004396.1 MGP_C3HHeJ_G0003827.1 mouse_genomes_project 4 86061828 86063182 + Saxo1os antisense antisense MGP_C3HHeJ_T0004511.1 MGP_C3HHeJ_G0003911.1 mouse_genomes_project 4 150005578 150007199 - Gm13201 antisense antisense MGP_C3HHeJ_T0004512.1 MGP_C3HHeJ_G0003911.1 mouse_genomes_project 4 150005793 150012109 - Gm13201 antisense antisense MGP_C3HHeJ_T0007829.1 MGP_C3HHeJ_G0006397.1 mouse_genomes_project 4 103380969 103493148 + Gm12718 lincRNA lincRNA MGP_C3HHeJ_T0007830.1 MGP_C3HHeJ_G0006397.1 mouse_genomes_project 4 103380990 103493130 + Gm12718 lincRNA lincRNA MGP_C3HHeJ_T0064999.1 MGP_C3HHeJ_G0027905.1 mouse_genomes_project 4 41660804 41662451 - MGP_C3HHeJ_P0064999 Sit1 protein_coding protein_coding MGP_C3HHeJ_T0065000.1 MGP_C3HHeJ_G0027905.1 mouse_genomes_project 4 41660910 41661939 - Sit1 protein_coding processed_transcript MGP_C3HHeJ_T0007909.1 MGP_C3HHeJ_G0006449.1 mouse_genomes_project 4 134358208 134359399 + Gm12974 lincRNA lincRNA MGP_C3HHeJ_T0004445.1 MGP_C3HHeJ_G0003859.1 mouse_genomes_project 4 119144107 119147324 - Gm12853 antisense antisense MGP_C3HHeJ_T0001386.1 MGP_C3HHeJ_G0001317.1 mouse_genomes_project 4 132272914 132277524 + TEC TEC MGP_C3HHeJ_T0068719.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 142987664 143019192 - MGP_C3HHeJ_P0068719 Ctrc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068721.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143011251 143019286 - Ctrc protein_coding processed_transcript MGP_C3HHeJ_T0068722.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143011251 143019212 - MGP_C3HHeJ_P0068722 Ctrc protein_coding protein_coding MGP_C3HHeJ_T0068723.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143011256 143019288 - MGP_C3HHeJ_P0068723 Ctrc protein_coding protein_coding MGP_C3HHeJ_T0068724.1 MGP_C3HHeJ_G0028758.1 mouse_genomes_project 4 143017767 143018161 - Ctrc protein_coding processed_transcript MGP_C3HHeJ_T0065278.1 MGP_C3HHeJ_G0027962.1 mouse_genomes_project 4 44930793 44976572 - MGP_C3HHeJ_P0065278 Tbc1d2 protein_coding protein_coding MGP_C3HHeJ_T0065279.1 MGP_C3HHeJ_G0027962.1 mouse_genomes_project 4 44958908 44976572 - MGP_C3HHeJ_P0065279 Tbc1d2 protein_coding protein_coding MGP_C3HHeJ_T0069318.1 MGP_C3HHeJ_G0028901.1 mouse_genomes_project 4 157147599 157163365 + MGP_C3HHeJ_P0069318 protein_coding protein_coding MGP_C3HHeJ_T0069319.1 MGP_C3HHeJ_G0028901.1 mouse_genomes_project 4 157158139 157159218 + protein_coding processed_transcript MGP_C3HHeJ_T0100664.1 MGP_C3HHeJ_G0038858.1 mouse_genomes_project 4 121669927 121670052 - Gm26186 snoRNA snoRNA MGP_C3HHeJ_T0014419.1 MGP_C3HHeJ_G0012523.1 mouse_genomes_project 4 66566015 66566642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007852.1 MGP_C3HHeJ_G0006414.1 mouse_genomes_project 4 119578726 119592896 - Gm12866 lincRNA lincRNA MGP_C3HHeJ_T0099356.1 MGP_C3HHeJ_G0037550.1 mouse_genomes_project 4 67256863 67257034 + Gm23738 snRNA snRNA MGP_C3HHeJ_T0069127.1 MGP_C3HHeJ_G0028868.1 mouse_genomes_project 4 154166375 154173001 - MGP_C3HHeJ_P0069127 Phf13 protein_coding protein_coding MGP_C3HHeJ_T0010515.1 MGP_C3HHeJ_G0008648.1 mouse_genomes_project 4 81391208 81391318 - Gm22402 miRNA miRNA MGP_C3HHeJ_T0067511.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127170580 127184610 - MGP_C3HHeJ_P0067511 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067512.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171079 127182449 - MGP_C3HHeJ_P0067512 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067513.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171128 127184518 - Zmym1 protein_coding processed_transcript MGP_C3HHeJ_T0067514.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171128 127184582 - MGP_C3HHeJ_P0067514 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067515.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127171128 127184561 - MGP_C3HHeJ_P0067515 Zmym1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067516.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127172151 127182344 - Zmym1 protein_coding processed_transcript MGP_C3HHeJ_T0067517.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127177774 127181038 - Zmym1 protein_coding processed_transcript MGP_C3HHeJ_T0067518.1 MGP_C3HHeJ_G0028487.1 mouse_genomes_project 4 127177813 127184544 - MGP_C3HHeJ_P0067518 Zmym1 protein_coding protein_coding MGP_C3HHeJ_T0067709.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872919 129874065 - Ccdc28b protein_coding processed_transcript MGP_C3HHeJ_T0067710.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872919 129877397 - MGP_C3HHeJ_P0067710 Ccdc28b protein_coding protein_coding MGP_C3HHeJ_T0067711.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872920 129874388 - Ccdc28b protein_coding retained_intron MGP_C3HHeJ_T0067712.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872921 129874894 - Ccdc28b protein_coding processed_transcript MGP_C3HHeJ_T0067713.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129872921 129877287 - MGP_C3HHeJ_P0067713 Ccdc28b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067714.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129873948 129877328 - MGP_C3HHeJ_P0067714 Ccdc28b protein_coding protein_coding MGP_C3HHeJ_T0067715.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129874221 129876175 - Ccdc28b protein_coding processed_transcript MGP_C3HHeJ_T0067716.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129874475 129877336 - MGP_C3HHeJ_P0067716 Ccdc28b protein_coding protein_coding MGP_C3HHeJ_T0067717.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129875627 129877294 - Ccdc28b protein_coding retained_intron MGP_C3HHeJ_T0067718.1 MGP_C3HHeJ_G0028530.1 mouse_genomes_project 4 129876749 129877349 - Ccdc28b protein_coding retained_intron MGP_C3HHeJ_T0007891.1 MGP_C3HHeJ_G0006439.1 mouse_genomes_project 4 131354599 131359720 - A930031H19Rik lincRNA lincRNA MGP_C3HHeJ_T0007892.1 MGP_C3HHeJ_G0006439.1 mouse_genomes_project 4 131354599 131364071 - A930031H19Rik lincRNA lincRNA MGP_C3HHeJ_T0100635.1 MGP_C3HHeJ_G0038829.1 mouse_genomes_project 4 61730024 61730157 + Gm24117 snoRNA snoRNA MGP_C3HHeJ_T0066692.1 MGP_C3HHeJ_G0028294.1 mouse_genomes_project 4 115561872 115616616 + MGP_C3HHeJ_P0066692 protein_coding protein_coding MGP_C3HHeJ_T0064602.1 MGP_C3HHeJ_G0027819.1 mouse_genomes_project 4 30687839 30714183 + MGP_C3HHeJ_P0064602 Srsf12 protein_coding protein_coding MGP_C3HHeJ_T0064603.1 MGP_C3HHeJ_G0027819.1 mouse_genomes_project 4 30688154 30714193 + MGP_C3HHeJ_P0064603 Srsf12 protein_coding protein_coding MGP_C3HHeJ_T0064565.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056401 30073489 + Casp8ap2 protein_coding processed_transcript MGP_C3HHeJ_T0064566.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056420 30081239 + Casp8ap2 protein_coding processed_transcript MGP_C3HHeJ_T0064567.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056423 30095349 + MGP_C3HHeJ_P0064567 Casp8ap2 protein_coding protein_coding MGP_C3HHeJ_T0064568.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30056428 30095349 + MGP_C3HHeJ_P0064568 Casp8ap2 protein_coding protein_coding MGP_C3HHeJ_T0064569.1 MGP_C3HHeJ_G0027810.1 mouse_genomes_project 4 30065747 30095349 + MGP_C3HHeJ_P0064569 Casp8ap2 protein_coding protein_coding MGP_C3HHeJ_T0097905.1 MGP_C3HHeJ_G0036117.1 mouse_genomes_project 4 123873050 123874547 - pseudogene pseudogene MGP_C3HHeJ_T0064721.1 MGP_C3HHeJ_G0027847.1 mouse_genomes_project 4 38857089 38870462 + MGP_C3HHeJ_P0064721 Spink4 protein_coding protein_coding MGP_C3HHeJ_T0064722.1 MGP_C3HHeJ_G0027847.1 mouse_genomes_project 4 38857091 38862741 + Spink4 protein_coding processed_transcript MGP_C3HHeJ_T0065080.1 MGP_C3HHeJ_G0027918.1 mouse_genomes_project 4 41853494 41862503 - MGP_C3HHeJ_P0065080 Fam221b protein_coding protein_coding MGP_C3HHeJ_T0065081.1 MGP_C3HHeJ_G0027918.1 mouse_genomes_project 4 41856978 41862507 - Fam221b protein_coding retained_intron MGP_C3HHeJ_T0064356.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359770 8396003 + Rad54b protein_coding processed_transcript MGP_C3HHeJ_T0064357.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359790 8388109 + MGP_C3HHeJ_P0064357 Rad54b protein_coding protein_coding MGP_C3HHeJ_T0064358.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359797 8381308 + MGP_C3HHeJ_P0064358 Rad54b protein_coding protein_coding MGP_C3HHeJ_T0064359.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8359820 8419341 + MGP_C3HHeJ_P0064359 Rad54b protein_coding protein_coding MGP_C3HHeJ_T0064360.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8378993 8398133 + Rad54b protein_coding processed_transcript MGP_C3HHeJ_T0064362.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8398232 8409698 + MGP_C3HHeJ_P0064362 Rad54b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064363.1 MGP_C3HHeJ_G0027753.1 mouse_genomes_project 4 8412928 8414317 + Rad54b protein_coding retained_intron MGP_C3HHeJ_T0014231.1 MGP_C3HHeJ_G0012335.1 mouse_genomes_project 4 3170702 3171146 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014369.1 MGP_C3HHeJ_G0012473.1 mouse_genomes_project 4 45388652 45389015 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099362.1 MGP_C3HHeJ_G0037556.1 mouse_genomes_project 4 92625409 92625517 - Gm22605 snRNA snRNA MGP_C3HHeJ_T0067967.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502148 133557364 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067968.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502394 133575858 + MGP_C3HHeJ_P0067968 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067969.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502394 133576105 + MGP_C3HHeJ_P0067969 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067970.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502431 133557655 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067971.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502453 133551835 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067972.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502653 133575647 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067973.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502865 133557366 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067974.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133502907 133558320 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0067975.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133503019 133575648 + MGP_C3HHeJ_P0067975 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067976.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133536281 133575249 + MGP_C3HHeJ_P0067976 Ahdc1 protein_coding protein_coding MGP_C3HHeJ_T0067977.1 MGP_C3HHeJ_G0028581.1 mouse_genomes_project 4 133562795 133570063 + Ahdc1 protein_coding processed_transcript MGP_C3HHeJ_T0068422.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138760612 138814913 + MGP_C3HHeJ_P0068422 Ece1 protein_coding protein_coding MGP_C3HHeJ_T0068423.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138814529 138836796 + MGP_C3HHeJ_P0068423 Ece1 protein_coding protein_coding MGP_C3HHeJ_T0068424.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138814740 138827172 + Ece1 protein_coding processed_transcript MGP_C3HHeJ_T0068425.1 MGP_C3HHeJ_G0028685.1 mouse_genomes_project 4 138814784 138868332 + MGP_C3HHeJ_P0068425 Ece1 protein_coding protein_coding MGP_C3HHeJ_T0064978.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601026 41603142 - MGP_C3HHeJ_P0064978 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064979.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601083 41603125 - MGP_C3HHeJ_P0064979 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064980.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601147 41602032 - MGP_C3HHeJ_P0064980 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064981.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601147 41603097 - MGP_C3HHeJ_P0064981 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064982.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601190 41603097 - MGP_C3HHeJ_P0064982 Fam166b protein_coding protein_coding MGP_C3HHeJ_T0064983.1 MGP_C3HHeJ_G0027902.1 mouse_genomes_project 4 41601595 41603097 - MGP_C3HHeJ_P0064983 Fam166b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007766.1 MGP_C3HHeJ_G0006344.1 mouse_genomes_project 4 53694010 53843423 - Gm12514 lincRNA lincRNA MGP_C3HHeJ_T0007767.1 MGP_C3HHeJ_G0006344.1 mouse_genomes_project 4 53694247 53698305 - Gm12514 lincRNA lincRNA MGP_C3HHeJ_T0064232.1 MGP_C3HHeJ_G0027731.1 mouse_genomes_project 4 1441059 1472483 - MGP_C3HHeJ_P0064232 Impad1 protein_coding protein_coding MGP_C3HHeJ_T0004474.1 MGP_C3HHeJ_G0003882.1 mouse_genomes_project 4 132993942 132994857 + Gm12999 antisense antisense MGP_C3HHeJ_T0004421.1 MGP_C3HHeJ_G0003842.1 mouse_genomes_project 4 107226496 107236148 + Gm12802 antisense antisense MGP_C3HHeJ_T0067787.1 MGP_C3HHeJ_G0028542.1 mouse_genomes_project 4 130514071 130514819 - Gm853 protein_coding processed_transcript MGP_C3HHeJ_T0067788.1 MGP_C3HHeJ_G0028542.1 mouse_genomes_project 4 130514071 130527371 - MGP_C3HHeJ_P0067788 Gm853 protein_coding protein_coding MGP_C3HHeJ_T0010500.1 MGP_C3HHeJ_G0008633.1 mouse_genomes_project 4 34299840 34299917 - Mir873a miRNA miRNA MGP_C3HHeJ_T0068896.1 MGP_C3HHeJ_G0028827.1 mouse_genomes_project 4 150461943 150467258 - MGP_C3HHeJ_P0068896 Angptl7 protein_coding protein_coding MGP_C3HHeJ_T0100645.1 MGP_C3HHeJ_G0038839.1 mouse_genomes_project 4 78548404 78548527 - Gm25836 snoRNA snoRNA MGP_C3HHeJ_T0065413.1 MGP_C3HHeJ_G0028002.1 mouse_genomes_project 4 52271196 52321016 + MGP_C3HHeJ_P0065413 Fktn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065414.1 MGP_C3HHeJ_G0028002.1 mouse_genomes_project 4 52271561 52319616 + MGP_C3HHeJ_P0065414 Fktn protein_coding protein_coding MGP_C3HHeJ_T0065560.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58581164 58686035 + MGP_C3HHeJ_P0065560 Snx30 protein_coding protein_coding MGP_C3HHeJ_T0065561.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58581204 58613969 + Snx30 protein_coding processed_transcript MGP_C3HHeJ_T0065562.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58665975 58681823 + Snx30 protein_coding processed_transcript MGP_C3HHeJ_T0065563.1 MGP_C3HHeJ_G0028041.1 mouse_genomes_project 4 58666061 58675847 + Snx30 protein_coding processed_transcript MGP_C3HHeJ_T0065865.1 MGP_C3HHeJ_G0028107.1 mouse_genomes_project 4 86078989 86080608 + MGP_C3HHeJ_P0065865 Rraga protein_coding protein_coding MGP_C3HHeJ_T0067217.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121513692 121514521 - MGP_C3HHeJ_P0067217 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0067218.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121513692 121517469 - MGP_C3HHeJ_P0067218 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0067219.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121513698 121517469 - MGP_C3HHeJ_P0067219 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0067220.1 MGP_C3HHeJ_G0028414.1 mouse_genomes_project 4 121514765 121517481 - MGP_C3HHeJ_P0067220 Exo5 protein_coding protein_coding MGP_C3HHeJ_T0010561.1 MGP_C3HHeJ_G0008694.1 mouse_genomes_project 4 141790677 141790773 + Gm23045 miRNA miRNA MGP_C3HHeJ_T0066932.1 MGP_C3HHeJ_G0028344.1 mouse_genomes_project 4 117687578 117730746 - MGP_C3HHeJ_P0066932 Gm1661 protein_coding protein_coding MGP_C3HHeJ_T0066933.1 MGP_C3HHeJ_G0028344.1 mouse_genomes_project 4 117689444 117730746 - MGP_C3HHeJ_P0066933 Gm1661 protein_coding protein_coding MGP_C3HHeJ_T0066934.1 MGP_C3HHeJ_G0028344.1 mouse_genomes_project 4 117721710 117730954 - Gm1661 protein_coding processed_transcript MGP_C3HHeJ_T0017872.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127157231 127160501 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0017873.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127158948 127160501 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0017874.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127159168 127172885 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0017875.1 MGP_C3HHeJ_G0015338.1 mouse_genomes_project 4 127159269 127160439 + Gm12940 processed_transcript processed_transcript MGP_C3HHeJ_T0064449.1 MGP_C3HHeJ_G0027783.1 mouse_genomes_project 4 16822274 16853805 + MGP_C3HHeJ_P0064449 Slc7a13 protein_coding protein_coding MGP_C3HHeJ_T0014291.1 MGP_C3HHeJ_G0012395.1 mouse_genomes_project 4 20598219 20599420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014499.1 MGP_C3HHeJ_G0012603.1 mouse_genomes_project 4 98721714 98722134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064637.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32207763 32232549 - MGP_C3HHeJ_P0064637 Slc35a1 protein_coding protein_coding MGP_C3HHeJ_T0064638.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32208385 32228581 - Slc35a1 protein_coding processed_transcript MGP_C3HHeJ_T0064639.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32213982 32228488 - MGP_C3HHeJ_P0064639 Slc35a1 protein_coding protein_coding MGP_C3HHeJ_T0064640.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32219877 32232366 - Slc35a1 protein_coding processed_transcript MGP_C3HHeJ_T0064641.1 MGP_C3HHeJ_G0027827.1 mouse_genomes_project 4 32228459 32232507 - Slc35a1 protein_coding processed_transcript MGP_C3HHeJ_T0004379.1 MGP_C3HHeJ_G0003811.1 mouse_genomes_project 4 44625591 44669747 - Gm12446 antisense antisense MGP_C3HHeJ_T0004380.1 MGP_C3HHeJ_G0003811.1 mouse_genomes_project 4 44654363 44671827 - Gm12446 antisense antisense MGP_C3HHeJ_T0065602.1 MGP_C3HHeJ_G0028055.1 mouse_genomes_project 4 61414080 61425291 - Alad protein_coding processed_transcript MGP_C3HHeJ_T0065603.1 MGP_C3HHeJ_G0028055.1 mouse_genomes_project 4 61414080 61425328 - MGP_C3HHeJ_P0065603 Alad protein_coding protein_coding MGP_C3HHeJ_T0065604.1 MGP_C3HHeJ_G0028055.1 mouse_genomes_project 4 61414080 61425304 - MGP_C3HHeJ_P0065604 Alad protein_coding protein_coding MGP_C3HHeJ_T0067642.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129666205 129681617 - MGP_C3HHeJ_P0067642 Zbtb8b protein_coding protein_coding MGP_C3HHeJ_T0067643.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129666205 129681582 - MGP_C3HHeJ_P0067643 Zbtb8b protein_coding protein_coding MGP_C3HHeJ_T0067644.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129666709 129672970 - Zbtb8b protein_coding processed_transcript MGP_C3HHeJ_T0067645.1 MGP_C3HHeJ_G0028518.1 mouse_genomes_project 4 129669585 129681584 - Zbtb8b protein_coding retained_intron MGP_C3HHeJ_T0066034.1 MGP_C3HHeJ_G0028158.1 mouse_genomes_project 4 96295540 96332914 - MGP_C3HHeJ_P0066034 Cyp2j6 protein_coding protein_coding MGP_C3HHeJ_T0014339.1 MGP_C3HHeJ_G0012443.1 mouse_genomes_project 4 32981214 32981648 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099365.1 MGP_C3HHeJ_G0037559.1 mouse_genomes_project 4 96718461 96718524 + Gm27579 snRNA snRNA MGP_C3HHeJ_T0100679.1 MGP_C3HHeJ_G0038873.1 mouse_genomes_project 4 132742543 132742617 + Snord99 snoRNA snoRNA MGP_C3HHeJ_T0067542.1 MGP_C3HHeJ_G0028498.1 mouse_genomes_project 4 128430622 128431368 - MGP_C3HHeJ_P0067542 Hmgb4 protein_coding protein_coding MGP_C3HHeJ_T0014321.1 MGP_C3HHeJ_G0012425.1 mouse_genomes_project 4 28077299 28077862 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066590.1 MGP_C3HHeJ_G0028271.1 mouse_genomes_project 4 110203227 110208865 + MGP_C3HHeJ_P0066590 Dmrta2 protein_coding protein_coding MGP_C3HHeJ_T0067349.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859381 124860632 - protein_coding retained_intron MGP_C3HHeJ_T0067350.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859786 124861111 - MGP_C3HHeJ_P0067350 protein_coding protein_coding MGP_C3HHeJ_T0067351.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859786 124861032 - MGP_C3HHeJ_P0067351 protein_coding protein_coding MGP_C3HHeJ_T0067352.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859787 124860963 - MGP_C3HHeJ_P0067352 protein_coding protein_coding MGP_C3HHeJ_T0067353.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859791 124861509 - MGP_C3HHeJ_P0067353 protein_coding protein_coding MGP_C3HHeJ_T0067354.1 MGP_C3HHeJ_G0028451.1 mouse_genomes_project 4 124859847 124860775 - MGP_C3HHeJ_P0067354 protein_coding protein_coding MGP_C3HHeJ_T0068504.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946659 139964799 + MGP_C3HHeJ_P0068504 Tmco4 protein_coding protein_coding MGP_C3HHeJ_T0068505.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946663 140035947 + MGP_C3HHeJ_P0068505 Tmco4 protein_coding protein_coding MGP_C3HHeJ_T0068506.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946676 140035943 + MGP_C3HHeJ_P0068506 Tmco4 protein_coding protein_coding MGP_C3HHeJ_T0068507.1 MGP_C3HHeJ_G0028706.1 mouse_genomes_project 4 139946680 140008810 + Tmco4 protein_coding processed_transcript MGP_C3HHeJ_T0067482.1 MGP_C3HHeJ_G0028482.1 mouse_genomes_project 4 126826153 126847177 - MGP_C3HHeJ_P0067482 protein_coding protein_coding MGP_C3HHeJ_T0014384.1 MGP_C3HHeJ_G0012488.1 mouse_genomes_project 4 51361710 51362999 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069137.1 MGP_C3HHeJ_G0028871.1 mouse_genomes_project 4 154204983 154216277 - MGP_C3HHeJ_P0069137 Tas1r1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069138.1 MGP_C3HHeJ_G0028871.1 mouse_genomes_project 4 154204992 154217431 - MGP_C3HHeJ_P0069138 Tas1r1 protein_coding protein_coding MGP_C3HHeJ_T0014328.1 MGP_C3HHeJ_G0012432.1 mouse_genomes_project 4 30335079 30335689 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010491.1 MGP_C3HHeJ_G0008624.1 mouse_genomes_project 4 12833318 12833410 - Mir6400 miRNA miRNA MGP_C3HHeJ_T0065564.1 MGP_C3HHeJ_G0028042.1 mouse_genomes_project 4 58686406 58696345 - MGP_C3HHeJ_P0065564 Slc46a2 protein_coding protein_coding MGP_C3HHeJ_T0067736.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129969785 130008104 - MGP_C3HHeJ_P0067736 Khdrbs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067737.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129970444 129980456 - Khdrbs1 protein_coding retained_intron MGP_C3HHeJ_T0067738.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129980454 130008103 - MGP_C3HHeJ_P0067738 Khdrbs1 protein_coding protein_coding MGP_C3HHeJ_T0067739.1 MGP_C3HHeJ_G0028534.1 mouse_genomes_project 4 129995087 130008110 - Khdrbs1 protein_coding retained_intron MGP_C3HHeJ_T0004430.1 MGP_C3HHeJ_G0003847.1 mouse_genomes_project 4 109601659 109602078 - Ttc39aos1 antisense antisense MGP_C3HHeJ_T0004431.1 MGP_C3HHeJ_G0003847.1 mouse_genomes_project 4 109601674 109604021 - Ttc39aos1 antisense antisense MGP_C3HHeJ_T0065160.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43003261 43010884 + MGP_C3HHeJ_P0065160 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065161.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43003952 43186195 + MGP_C3HHeJ_P0065161 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065162.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43003972 43164050 + Zcchc7 protein_coding retained_intron MGP_C3HHeJ_T0065163.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43004023 43011141 + MGP_C3HHeJ_P0065163 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065164.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43004031 43162869 + MGP_C3HHeJ_P0065164 Zcchc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065165.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43009356 43165112 + Zcchc7 protein_coding retained_intron MGP_C3HHeJ_T0065166.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43160254 43185354 + Zcchc7 protein_coding processed_transcript MGP_C3HHeJ_T0065167.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43176170 43186207 + MGP_C3HHeJ_P0065167 Zcchc7 protein_coding protein_coding MGP_C3HHeJ_T0065168.1 MGP_C3HHeJ_G0027935.1 mouse_genomes_project 4 43179044 43185354 + MGP_C3HHeJ_P0065168 Zcchc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004529.1 MGP_C3HHeJ_G0003924.1 mouse_genomes_project 4 152964676 152991381 - 1700045H11Rik antisense antisense MGP_C3HHeJ_T0100605.1 MGP_C3HHeJ_G0038799.1 mouse_genomes_project 4 11112342 11112469 + Gm24908 snoRNA snoRNA MGP_C3HHeJ_T0100685.1 MGP_C3HHeJ_G0038879.1 mouse_genomes_project 4 156139585 156139717 + Gm25880 snoRNA snoRNA MGP_C3HHeJ_T0098137.1 MGP_C3HHeJ_G0036349.1 mouse_genomes_project 4 124830120 124830239 + n-R5s192 rRNA rRNA MGP_C3HHeJ_T0098132.1 MGP_C3HHeJ_G0036344.1 mouse_genomes_project 4 57612771 57612856 + Gm26400 rRNA rRNA MGP_C3HHeJ_T0014269.1 MGP_C3HHeJ_G0012373.1 mouse_genomes_project 4 13977874 13978847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066557.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109414574 109454571 + MGP_C3HHeJ_P0066557 Calr4 protein_coding protein_coding MGP_C3HHeJ_T0066558.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109434927 109454821 + MGP_C3HHeJ_P0066558 Calr4 protein_coding protein_coding MGP_C3HHeJ_T0066559.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109436074 109454821 + MGP_C3HHeJ_P0066559 Calr4 protein_coding protein_coding MGP_C3HHeJ_T0066560.1 MGP_C3HHeJ_G0028264.1 mouse_genomes_project 4 109445021 109454393 + Calr4 protein_coding processed_transcript MGP_C3HHeJ_T0065428.1 MGP_C3HHeJ_G0028007.1 mouse_genomes_project 4 54099565 54105373 - MGP_C3HHeJ_P0065428 Klf4 protein_coding protein_coding MGP_C3HHeJ_T0065429.1 MGP_C3HHeJ_G0028007.1 mouse_genomes_project 4 54102427 54103595 - MGP_C3HHeJ_P0065429 Klf4 protein_coding protein_coding MGP_C3HHeJ_T0065430.1 MGP_C3HHeJ_G0028007.1 mouse_genomes_project 4 54102536 54105360 - MGP_C3HHeJ_P0065430 Klf4 protein_coding protein_coding MGP_C3HHeJ_T0065879.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86297528 86399277 + MGP_C3HHeJ_P0065879 Dennd4c protein_coding protein_coding MGP_C3HHeJ_T0065880.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86297528 86376738 + MGP_C3HHeJ_P0065880 Dennd4c protein_coding protein_coding MGP_C3HHeJ_T0065881.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86297709 86398226 + MGP_C3HHeJ_P0065881 Dennd4c protein_coding unknown_likely_coding MGP_C3HHeJ_T0065882.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86317610 86398390 + MGP_C3HHeJ_P0065882 Dennd4c protein_coding protein_coding MGP_C3HHeJ_T0065883.1 MGP_C3HHeJ_G0028110.1 mouse_genomes_project 4 86321269 86325196 + Dennd4c protein_coding processed_transcript MGP_C3HHeJ_T0068456.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139159226 139214061 + MGP_C3HHeJ_P0068456 Kif17 protein_coding protein_coding MGP_C3HHeJ_T0068459.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139171884 139213586 + MGP_C3HHeJ_P0068459 Kif17 protein_coding protein_coding MGP_C3HHeJ_T0068460.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139172124 139213476 + MGP_C3HHeJ_P0068460 Kif17 protein_coding protein_coding MGP_C3HHeJ_T0068461.1 MGP_C3HHeJ_G0028689.1 mouse_genomes_project 4 139172151 139196760 + Kif17 protein_coding retained_intron MGP_C3HHeJ_T0066160.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101421256 101536394 + MGP_C3HHeJ_P0066160 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0066161.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101432389 101573182 + MGP_C3HHeJ_P0066161 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0066162.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101432494 101541744 + MGP_C3HHeJ_P0066162 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0066163.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101432548 101527917 + Dnajc6 protein_coding processed_transcript MGP_C3HHeJ_T0066164.1 MGP_C3HHeJ_G0028187.1 mouse_genomes_project 4 101475546 101573190 + MGP_C3HHeJ_P0066164 Dnajc6 protein_coding protein_coding MGP_C3HHeJ_T0014490.1 MGP_C3HHeJ_G0012594.1 mouse_genomes_project 4 94140648 94141236 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014579.1 MGP_C3HHeJ_G0012683.1 mouse_genomes_project 4 121971852 121972180 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069280.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156420323 156436973 + MGP_C3HHeJ_P0069280 Wrap73 protein_coding protein_coding MGP_C3HHeJ_T0069281.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156420360 156436973 + Wrap73 protein_coding processed_transcript MGP_C3HHeJ_T0069282.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156430395 156435437 + MGP_C3HHeJ_P0069282 Wrap73 protein_coding protein_coding MGP_C3HHeJ_T0069283.1 MGP_C3HHeJ_G0028894.1 mouse_genomes_project 4 156435371 156450342 + Wrap73 protein_coding processed_transcript MGP_C3HHeJ_T0017878.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132783371 132790980 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017879.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789247 132791003 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017880.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789248 132790250 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017881.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789248 132790950 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0017882.1 MGP_C3HHeJ_G0015340.1 mouse_genomes_project 4 132789318 132790653 - Snhg3 processed_transcript processed_transcript MGP_C3HHeJ_T0014612.1 MGP_C3HHeJ_G0012716.1 mouse_genomes_project 4 133363904 133365768 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014308.1 MGP_C3HHeJ_G0012412.1 mouse_genomes_project 4 24763477 24763914 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068482.1 MGP_C3HHeJ_G0028698.1 mouse_genomes_project 4 139682102 139704595 + MGP_C3HHeJ_P0068482 Pla2g2c protein_coding protein_coding MGP_C3HHeJ_T0068483.1 MGP_C3HHeJ_G0028698.1 mouse_genomes_project 4 139682634 139702156 + MGP_C3HHeJ_P0068483 Pla2g2c protein_coding protein_coding MGP_C3HHeJ_T0068484.1 MGP_C3HHeJ_G0028698.1 mouse_genomes_project 4 139682634 139703037 + MGP_C3HHeJ_P0068484 Pla2g2c protein_coding protein_coding MGP_C3HHeJ_T0014229.1 MGP_C3HHeJ_G0012333.1 mouse_genomes_project 4 2718008 2718762 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007889.1 MGP_C3HHeJ_G0006437.1 mouse_genomes_project 4 131115427 131117214 + Gm12972 lincRNA lincRNA MGP_C3HHeJ_T0014297.1 MGP_C3HHeJ_G0012401.1 mouse_genomes_project 4 22488434 22489262 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067996.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756788 133766833 - MGP_C3HHeJ_P0067996 Sytl1 protein_coding protein_coding MGP_C3HHeJ_T0067997.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756788 133766807 - MGP_C3HHeJ_P0067997 Sytl1 protein_coding protein_coding MGP_C3HHeJ_T0067998.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756796 133766807 - Sytl1 protein_coding processed_transcript MGP_C3HHeJ_T0067999.1 MGP_C3HHeJ_G0028586.1 mouse_genomes_project 4 133756859 133766772 - Sytl1 protein_coding processed_transcript MGP_C3HHeJ_T0007908.1 MGP_C3HHeJ_G0006448.1 mouse_genomes_project 4 133583173 133586353 + Gm26615 lincRNA lincRNA MGP_C3HHeJ_T0004437.1 MGP_C3HHeJ_G0003852.1 mouse_genomes_project 4 116949492 116951132 + antisense antisense MGP_C3HHeJ_T0014235.1 MGP_C3HHeJ_G0012339.1 mouse_genomes_project 4 5137133 5137465 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007899.1 MGP_C3HHeJ_G0006445.1 mouse_genomes_project 4 132696740 132696898 + Gm28872 lincRNA lincRNA MGP_C3HHeJ_T0067402.1 MGP_C3HHeJ_G0028466.1 mouse_genomes_project 4 126147551 126149512 + MGP_C3HHeJ_P0067402 Lsm10 protein_coding protein_coding MGP_C3HHeJ_T0067403.1 MGP_C3HHeJ_G0028466.1 mouse_genomes_project 4 126147581 126149509 + MGP_C3HHeJ_P0067403 Lsm10 protein_coding protein_coding MGP_C3HHeJ_T0067404.1 MGP_C3HHeJ_G0028466.1 mouse_genomes_project 4 126147588 126149061 + MGP_C3HHeJ_P0067404 Lsm10 protein_coding protein_coding MGP_C3HHeJ_T0064727.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38913527 38968647 + MGP_C3HHeJ_P0064727 Nfx1 protein_coding protein_coding MGP_C3HHeJ_T0064728.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38913527 38955289 + MGP_C3HHeJ_P0064728 Nfx1 protein_coding protein_coding MGP_C3HHeJ_T0064729.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38913527 38956552 + MGP_C3HHeJ_P0064729 Nfx1 protein_coding protein_coding MGP_C3HHeJ_T0064730.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38945188 38954850 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064731.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38951887 38964978 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064732.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38964022 38967832 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064733.1 MGP_C3HHeJ_G0027850.1 mouse_genomes_project 4 38965857 38967194 + Nfx1 protein_coding processed_transcript MGP_C3HHeJ_T0064188.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 170084 197141 - MGP_C3HHeJ_P0064188 Tmem68 protein_coding protein_coding MGP_C3HHeJ_T0064189.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 170084 197097 - MGP_C3HHeJ_P0064189 Tmem68 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064190.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 171371 173218 - Tmem68 protein_coding retained_intron MGP_C3HHeJ_T0064191.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 190890 197092 - Tmem68 protein_coding retained_intron MGP_C3HHeJ_T0064192.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 190909 197092 - Tmem68 protein_coding processed_transcript MGP_C3HHeJ_T0064193.1 MGP_C3HHeJ_G0027721.1 mouse_genomes_project 4 191084 196021 - MGP_C3HHeJ_P0064193 Tmem68 protein_coding protein_coding MGP_C3HHeJ_T0007707.1 MGP_C3HHeJ_G0006295.1 mouse_genomes_project 4 319056 332425 - Gm26857 lincRNA lincRNA MGP_C3HHeJ_T0067731.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129942754 129963403 - MGP_C3HHeJ_P0067731 Tmem39b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067732.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129942754 129963445 - MGP_C3HHeJ_P0067732 Tmem39b protein_coding protein_coding MGP_C3HHeJ_T0067733.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129942998 129945336 - Tmem39b protein_coding retained_intron MGP_C3HHeJ_T0067734.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129958679 129963227 - MGP_C3HHeJ_P0067734 Tmem39b protein_coding protein_coding MGP_C3HHeJ_T0067735.1 MGP_C3HHeJ_G0028533.1 mouse_genomes_project 4 129958755 129963351 - MGP_C3HHeJ_P0067735 Tmem39b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067344.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124811670 124859681 + MGP_C3HHeJ_P0067344 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0067345.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812115 124860102 + MGP_C3HHeJ_P0067345 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0067346.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812115 124829527 + MGP_C3HHeJ_P0067346 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0067347.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812148 124814902 + Mtf1 protein_coding retained_intron MGP_C3HHeJ_T0067348.1 MGP_C3HHeJ_G0028450.1 mouse_genomes_project 4 124812244 124814264 + MGP_C3HHeJ_P0067348 Mtf1 protein_coding protein_coding MGP_C3HHeJ_T0066134.1 MGP_C3HHeJ_G0028180.1 mouse_genomes_project 4 100003718 100370741 + MGP_C3HHeJ_P0066134 Ror1 protein_coding protein_coding MGP_C3HHeJ_T0068934.1 MGP_C3HHeJ_G0028832.1 mouse_genomes_project 4 150618997 150653151 + MGP_C3HHeJ_P0068934 Gm572 protein_coding protein_coding MGP_C3HHeJ_T0099346.1 MGP_C3HHeJ_G0037540.1 mouse_genomes_project 4 42294964 42295076 - Gm22706 snRNA snRNA MGP_C3HHeJ_T0064618.1 MGP_C3HHeJ_G0027824.1 mouse_genomes_project 4 32092884 32109045 + MGP_C3HHeJ_P0064618 Akirin2 protein_coding protein_coding MGP_C3HHeJ_T0064619.1 MGP_C3HHeJ_G0027824.1 mouse_genomes_project 4 32092898 32104906 + Akirin2 protein_coding processed_transcript MGP_C3HHeJ_T0067595.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321412 129331834 - MGP_C3HHeJ_P0067595 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067596.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321413 129328765 - MGP_C3HHeJ_P0067596 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067597.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321419 129331538 - MGP_C3HHeJ_P0067597 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067598.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129321419 129331089 - MGP_C3HHeJ_P0067598 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067599.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322103 129330744 - MGP_C3HHeJ_P0067599 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067600.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322117 129331687 - MGP_C3HHeJ_P0067600 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067601.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322292 129331723 - MGP_C3HHeJ_P0067601 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067602.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129322483 129331537 - MGP_C3HHeJ_P0067602 Hpca protein_coding protein_coding MGP_C3HHeJ_T0067603.1 MGP_C3HHeJ_G0028509.1 mouse_genomes_project 4 129328402 129331506 - MGP_C3HHeJ_P0067603 Hpca protein_coding protein_coding MGP_C3HHeJ_T0065280.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 44991494 45338254 - MGP_C3HHeJ_P0065280 Gabbr2 protein_coding protein_coding MGP_C3HHeJ_T0065281.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 44993697 45019308 - Gabbr2 protein_coding processed_transcript MGP_C3HHeJ_T0065282.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 45008368 45056527 - MGP_C3HHeJ_P0065282 Gabbr2 protein_coding protein_coding MGP_C3HHeJ_T0065283.1 MGP_C3HHeJ_G0027963.1 mouse_genomes_project 4 45139504 45201486 - Gabbr2 protein_coding processed_transcript MGP_C3HHeJ_T0004383.1 MGP_C3HHeJ_G0003814.1 mouse_genomes_project 4 51796998 51801914 + 4930522O17Rik antisense antisense MGP_C3HHeJ_T0014486.1 MGP_C3HHeJ_G0012590.1 mouse_genomes_project 4 92849941 92852868 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100665.1 MGP_C3HHeJ_G0038859.1 mouse_genomes_project 4 122098820 122098952 + Gm26162 snoRNA snoRNA MGP_C3HHeJ_T0066241.1 MGP_C3HHeJ_G0028203.1 mouse_genomes_project 4 103238846 103294706 - MGP_C3HHeJ_P0066241 4921539E11Rik protein_coding protein_coding MGP_C3HHeJ_T0066242.1 MGP_C3HHeJ_G0028203.1 mouse_genomes_project 4 103238846 103294706 - MGP_C3HHeJ_P0066242 4921539E11Rik protein_coding protein_coding MGP_C3HHeJ_T0066243.1 MGP_C3HHeJ_G0028203.1 mouse_genomes_project 4 103244206 103294706 - MGP_C3HHeJ_P0066243 4921539E11Rik protein_coding protein_coding MGP_C3HHeJ_T0067554.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128840485 128946525 + MGP_C3HHeJ_P0067554 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067555.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128840521 128902658 + MGP_C3HHeJ_P0067555 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067556.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128876007 128896127 + Phc2 protein_coding retained_intron MGP_C3HHeJ_T0067557.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128876064 128946525 + MGP_C3HHeJ_P0067557 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067558.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128900627 128917502 + Phc2 protein_coding retained_intron MGP_C3HHeJ_T0067559.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920657 128946525 + MGP_C3HHeJ_P0067559 Phc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067560.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920661 128946525 + MGP_C3HHeJ_P0067560 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067561.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920758 128941865 + MGP_C3HHeJ_P0067561 Phc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067562.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128920786 128938662 + MGP_C3HHeJ_P0067562 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067563.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128921009 128941722 + MGP_C3HHeJ_P0067563 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067564.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128921047 128937125 + MGP_C3HHeJ_P0067564 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0067565.1 MGP_C3HHeJ_G0028501.1 mouse_genomes_project 4 128921058 128940780 + MGP_C3HHeJ_P0067565 Phc2 protein_coding protein_coding MGP_C3HHeJ_T0064457.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18725211 18733695 - Prdm13 protein_coding processed_transcript MGP_C3HHeJ_T0064458.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18725212 18733695 - MGP_C3HHeJ_P0064458 Prdm13 protein_coding protein_coding MGP_C3HHeJ_T0064459.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18725212 18733515 - MGP_C3HHeJ_P0064459 Prdm13 protein_coding protein_coding MGP_C3HHeJ_T0064460.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18727396 18733515 - Prdm13 protein_coding processed_transcript MGP_C3HHeJ_T0064461.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18727478 18733513 - Prdm13 protein_coding processed_transcript MGP_C3HHeJ_T0064462.1 MGP_C3HHeJ_G0027788.1 mouse_genomes_project 4 18730028 18733577 - Prdm13 protein_coding retained_intron MGP_C3HHeJ_T0017842.1 MGP_C3HHeJ_G0015319.1 mouse_genomes_project 4 94774275 94792691 - Gm12703 processed_transcript processed_transcript MGP_C3HHeJ_T0010497.1 MGP_C3HHeJ_G0008630.1 mouse_genomes_project 4 30929043 30929172 + Mir8118 miRNA miRNA MGP_C3HHeJ_T0004461.1 MGP_C3HHeJ_G0003872.1 mouse_genomes_project 4 125104460 125107211 - Gm12932 antisense antisense MGP_C3HHeJ_T0004452.1 MGP_C3HHeJ_G0003866.1 mouse_genomes_project 4 123613022 123615867 + Gm12925 antisense antisense MGP_C3HHeJ_T0004453.1 MGP_C3HHeJ_G0003866.1 mouse_genomes_project 4 123614595 123618348 + Gm12925 antisense antisense MGP_C3HHeJ_T0004454.1 MGP_C3HHeJ_G0003866.1 mouse_genomes_project 4 123614757 123618355 + Gm12925 antisense antisense MGP_C3HHeJ_T0068789.1 MGP_C3HHeJ_G0028792.1 mouse_genomes_project 4 145931346 145957093 - MGP_C3HHeJ_P0068789 1700012P22Rik protein_coding protein_coding MGP_C3HHeJ_T0067831.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132155042 132229665 - MGP_C3HHeJ_P0067831 Ptpru protein_coding unknown_likely_coding MGP_C3HHeJ_T0067832.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132155046 132229797 - MGP_C3HHeJ_P0067832 Ptpru protein_coding protein_coding MGP_C3HHeJ_T0067833.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132155047 132155511 - Ptpru protein_coding processed_transcript MGP_C3HHeJ_T0067834.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132156087 132229740 - MGP_C3HHeJ_P0067834 Ptpru protein_coding protein_coding MGP_C3HHeJ_T0067835.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132158725 132229761 - Ptpru protein_coding processed_transcript MGP_C3HHeJ_T0067836.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132171994 132213016 - MGP_C3HHeJ_P0067836 Ptpru protein_coding protein_coding MGP_C3HHeJ_T0067837.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132177298 132192501 - Ptpru protein_coding processed_transcript MGP_C3HHeJ_T0067838.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132183285 132188057 - Ptpru protein_coding retained_intron MGP_C3HHeJ_T0067839.1 MGP_C3HHeJ_G0028553.1 mouse_genomes_project 4 132189244 132193125 - Ptpru protein_coding retained_intron MGP_C3HHeJ_T0067336.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746609 124811078 + MGP_C3HHeJ_P0067336 Inpp5b protein_coding protein_coding MGP_C3HHeJ_T0067337.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746617 124756241 + MGP_C3HHeJ_P0067337 Inpp5b protein_coding protein_coding MGP_C3HHeJ_T0067338.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746631 124811072 + MGP_C3HHeJ_P0067338 Inpp5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067339.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124746637 124756203 + MGP_C3HHeJ_P0067339 Inpp5b protein_coding protein_coding MGP_C3HHeJ_T0067340.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124774302 124789827 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0067341.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124774408 124789880 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0067342.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124803765 124806488 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0067343.1 MGP_C3HHeJ_G0028449.1 mouse_genomes_project 4 124809114 124810677 + Inpp5b protein_coding processed_transcript MGP_C3HHeJ_T0068819.1 MGP_C3HHeJ_G0028807.1 mouse_genomes_project 4 149511521 149519467 - MGP_C3HHeJ_P0068819 protein_coding protein_coding MGP_C3HHeJ_T0007800.1 MGP_C3HHeJ_G0006373.1 mouse_genomes_project 4 84175075 84175892 + Gm12415 lincRNA lincRNA MGP_C3HHeJ_T0066040.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396188 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066041.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396164 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066042.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396204 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066043.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396175 - MGP_C3HHeJ_P0066043 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066044.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97596367 - MGP_C3HHeJ_P0066044 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066045.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97379213 97396197 - MGP_C3HHeJ_P0066045 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066046.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97380270 97505482 - MGP_C3HHeJ_P0066046 E130114P18Rik protein_coding protein_coding MGP_C3HHeJ_T0066047.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97386655 97396180 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0066048.1 MGP_C3HHeJ_G0028163.1 mouse_genomes_project 4 97494015 97596397 - E130114P18Rik protein_coding processed_transcript MGP_C3HHeJ_T0068275.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136672088 136690544 + MGP_C3HHeJ_P0068275 Hmgcl protein_coding protein_coding MGP_C3HHeJ_T0068276.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136672105 136688839 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0068277.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136674194 136686472 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0068278.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136687455 136690544 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0068279.1 MGP_C3HHeJ_G0028651.1 mouse_genomes_project 4 136688262 136690143 + Hmgcl protein_coding processed_transcript MGP_C3HHeJ_T0017862.1 MGP_C3HHeJ_G0015334.1 mouse_genomes_project 4 122848241 122850434 + 4933421A08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010499.1 MGP_C3HHeJ_G0008632.1 mouse_genomes_project 4 34299840 34299917 + Mir873b miRNA miRNA MGP_C3HHeJ_T0065360.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123652 48130349 + MGP_C3HHeJ_P0065360 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065361.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123706 48148517 + MGP_C3HHeJ_P0065361 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065362.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123706 48141892 + MGP_C3HHeJ_P0065362 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065363.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123712 48148518 + MGP_C3HHeJ_P0065363 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065364.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123739 48136180 + MGP_C3HHeJ_P0065364 Rnf20 protein_coding protein_coding MGP_C3HHeJ_T0065365.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123783 48131660 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065366.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48123805 48134606 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065367.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48133364 48140080 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065368.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48141903 48144467 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0065369.1 MGP_C3HHeJ_G0027986.1 mouse_genomes_project 4 48142608 48144191 + Rnf20 protein_coding processed_transcript MGP_C3HHeJ_T0067306.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670033 123674176 - MGP_C3HHeJ_P0067306 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0067307.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670033 123676036 - MGP_C3HHeJ_P0067307 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0067308.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670033 123676020 - MGP_C3HHeJ_P0067308 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0067309.1 MGP_C3HHeJ_G0028439.1 mouse_genomes_project 4 123670192 123676015 - MGP_C3HHeJ_P0067309 Ndufs5 protein_coding protein_coding MGP_C3HHeJ_T0014635.1 MGP_C3HHeJ_G0012739.1 mouse_genomes_project 4 143146871 143147436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100650.1 MGP_C3HHeJ_G0038844.1 mouse_genomes_project 4 93311258 93311386 - Gm23443 snoRNA snoRNA MGP_C3HHeJ_T0067207.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121339640 121373698 - MGP_C3HHeJ_P0067207 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0067208.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121339808 121346922 - Nfyc protein_coding processed_transcript MGP_C3HHeJ_T0067209.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121343179 121349708 - Nfyc protein_coding processed_transcript MGP_C3HHeJ_T0067210.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121346745 121411673 - MGP_C3HHeJ_P0067210 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0067211.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121350369 121411685 - MGP_C3HHeJ_P0067211 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0067212.1 MGP_C3HHeJ_G0028412.1 mouse_genomes_project 4 121362387 121411696 - MGP_C3HHeJ_P0067212 Nfyc protein_coding protein_coding MGP_C3HHeJ_T0065716.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73363410 73532805 + MGP_C3HHeJ_P0065716 Kdm4c protein_coding protein_coding MGP_C3HHeJ_T0065717.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73375058 73532805 + MGP_C3HHeJ_P0065717 Kdm4c protein_coding protein_coding MGP_C3HHeJ_T0065718.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387104 73457424 + Kdm4c protein_coding processed_transcript MGP_C3HHeJ_T0065719.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387104 73460490 + MGP_C3HHeJ_P0065719 Kdm4c protein_coding protein_coding MGP_C3HHeJ_T0065720.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387105 73399040 + Kdm4c protein_coding processed_transcript MGP_C3HHeJ_T0065721.1 MGP_C3HHeJ_G0028085.1 mouse_genomes_project 4 73387105 73395063 + Kdm4c protein_coding processed_transcript MGP_C3HHeJ_T0065584.1 MGP_C3HHeJ_G0028050.1 mouse_genomes_project 4 61313974 61332424 + MGP_C3HHeJ_P0065584 Prpf4 protein_coding protein_coding MGP_C3HHeJ_T0065585.1 MGP_C3HHeJ_G0028050.1 mouse_genomes_project 4 61327098 61328759 + Prpf4 protein_coding processed_transcript MGP_C3HHeJ_T0098469.1 MGP_C3HHeJ_G0036674.1 mouse_genomes_project 4 29679021 29693237 + Bach2it1 sense_intronic sense_intronic MGP_C3HHeJ_T0066717.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158579 116172529 + MGP_C3HHeJ_P0066717 Atpaf1 protein_coding protein_coding MGP_C3HHeJ_T0066718.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158581 116185656 + MGP_C3HHeJ_P0066718 Atpaf1 protein_coding protein_coding MGP_C3HHeJ_T0066719.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158819 116184539 + MGP_C3HHeJ_P0066719 Atpaf1 protein_coding protein_coding MGP_C3HHeJ_T0066720.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116158980 116189018 + MGP_C3HHeJ_P0066720 Atpaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066721.1 MGP_C3HHeJ_G0028304.1 mouse_genomes_project 4 116174907 116193459 + MGP_C3HHeJ_P0066721 Atpaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065045.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750457 41762651 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065046.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750457 41762203 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065047.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750457 41762987 - MGP_C3HHeJ_P0065047 Gba2 protein_coding protein_coding MGP_C3HHeJ_T0065048.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41750458 41762203 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065049.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41751923 41753172 - Gba2 protein_coding retained_intron MGP_C3HHeJ_T0065050.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41753892 41757598 - Gba2 protein_coding processed_transcript MGP_C3HHeJ_T0065051.1 MGP_C3HHeJ_G0027912.1 mouse_genomes_project 4 41754305 41762750 - MGP_C3HHeJ_P0065051 Gba2 protein_coding protein_coding MGP_C3HHeJ_T0011480.1 MGP_C3HHeJ_G0009613.1 mouse_genomes_project 4 101479971 101480245 + Gm22533 misc_RNA misc_RNA MGP_C3HHeJ_T0014642.1 MGP_C3HHeJ_G0012746.1 mouse_genomes_project 4 144958732 144959293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014556.1 MGP_C3HHeJ_G0012660.1 mouse_genomes_project 4 117385601 117386404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014469.1 MGP_C3HHeJ_G0012573.1 mouse_genomes_project 4 87194095 87195187 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001388.1 MGP_C3HHeJ_G0001319.1 mouse_genomes_project 4 136143178 136143508 + TEC TEC MGP_C3HHeJ_T0065089.1 MGP_C3HHeJ_G0027921.1 mouse_genomes_project 4 41898942 41903546 - MGP_C3HHeJ_P0065089 Olfr71 protein_coding protein_coding MGP_C3HHeJ_T0065090.1 MGP_C3HHeJ_G0027921.1 mouse_genomes_project 4 41898942 41899881 - MGP_C3HHeJ_P0065090 Olfr71 protein_coding protein_coding MGP_C3HHeJ_T0007840.1 MGP_C3HHeJ_G0006403.1 mouse_genomes_project 4 107879118 107884439 + Gm12907 lincRNA lincRNA MGP_C3HHeJ_T0097901.1 MGP_C3HHeJ_G0036113.1 mouse_genomes_project 4 3100046 3102921 - pseudogene pseudogene MGP_C3HHeJ_T0004465.1 MGP_C3HHeJ_G0003875.1 mouse_genomes_project 4 128431454 128433405 + Hmgb4os antisense antisense MGP_C3HHeJ_T0064866.1 MGP_C3HHeJ_G0027886.1 mouse_genomes_project 4 40701448 40702582 + MGP_C3HHeJ_P0064866 protein_coding protein_coding MGP_C3HHeJ_T0014597.1 MGP_C3HHeJ_G0012701.1 mouse_genomes_project 4 127108408 127108573 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065060.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41825849 41845113 + MGP_C3HHeJ_P0065060 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065061.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41826099 41845113 + MGP_C3HHeJ_P0065061 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065062.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41834967 41845113 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065063.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41835106 41836952 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065064.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41835113 41838241 + MGP_C3HHeJ_P0065064 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065065.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41835135 41845113 + MGP_C3HHeJ_P0065065 Npr2 protein_coding protein_coding MGP_C3HHeJ_T0065066.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41837997 41842040 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065067.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41840421 41844178 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065068.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41841058 41842267 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0065069.1 MGP_C3HHeJ_G0027915.1 mouse_genomes_project 4 41841866 41844099 + Npr2 protein_coding processed_transcript MGP_C3HHeJ_T0068717.1 MGP_C3HHeJ_G0028757.1 mouse_genomes_project 4 142987664 142992877 - Cela2a protein_coding retained_intron MGP_C3HHeJ_T0068718.1 MGP_C3HHeJ_G0028757.1 mouse_genomes_project 4 142987664 142999019 - MGP_C3HHeJ_P0068718 Cela2a protein_coding protein_coding MGP_C3HHeJ_T0068720.1 MGP_C3HHeJ_G0028757.1 mouse_genomes_project 4 142997813 142998860 - Cela2a protein_coding retained_intron MGP_C3HHeJ_T0098135.1 MGP_C3HHeJ_G0036347.1 mouse_genomes_project 4 94806950 94807064 + n-R5s189 rRNA rRNA MGP_C3HHeJ_T0101997.1 MGP_C3HHeJ_G0039962.1 mouse_genomes_project 4 95917598 95917804 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066473.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469364 108482802 + MGP_C3HHeJ_P0066473 Coa7 protein_coding protein_coding MGP_C3HHeJ_T0066474.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469377 108479709 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066475.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469380 108479941 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066476.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469402 108479436 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066477.1 MGP_C3HHeJ_G0028248.1 mouse_genomes_project 4 108469413 108473863 + Coa7 protein_coding processed_transcript MGP_C3HHeJ_T0066655.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112829739 112847644 + MGP_C3HHeJ_P0066655 Skint2 protein_coding protein_coding MGP_C3HHeJ_T0066656.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112829882 112871788 + MGP_C3HHeJ_P0066656 Skint2 protein_coding protein_coding MGP_C3HHeJ_T0066657.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112829893 112867318 + Skint2 protein_coding processed_transcript MGP_C3HHeJ_T0066658.1 MGP_C3HHeJ_G0028280.1 mouse_genomes_project 4 112832730 112867318 + MGP_C3HHeJ_P0066658 Skint2 protein_coding protein_coding MGP_C3HHeJ_T0099400.1 MGP_C3HHeJ_G0037594.1 mouse_genomes_project 4 136286163 136286264 + Gm23106 snRNA snRNA MGP_C3HHeJ_T0066470.1 MGP_C3HHeJ_G0028246.1 mouse_genomes_project 4 108312716 108350247 - MGP_C3HHeJ_P0066470 Zyg11a protein_coding protein_coding MGP_C3HHeJ_T0066471.1 MGP_C3HHeJ_G0028246.1 mouse_genomes_project 4 108312716 108350222 - MGP_C3HHeJ_P0066471 Zyg11a protein_coding protein_coding MGP_C3HHeJ_T0004527.1 MGP_C3HHeJ_G0003922.1 mouse_genomes_project 4 151959177 151963321 + Gm13070 antisense antisense MGP_C3HHeJ_T0014413.1 MGP_C3HHeJ_G0012517.1 mouse_genomes_project 4 62504488 62504735 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014582.1 MGP_C3HHeJ_G0012686.1 mouse_genomes_project 4 122452065 122453066 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010524.1 MGP_C3HHeJ_G0008657.1 mouse_genomes_project 4 107556058 107556143 + Gm24804 miRNA miRNA MGP_C3HHeJ_T0099357.1 MGP_C3HHeJ_G0037551.1 mouse_genomes_project 4 68209235 68209342 + Gm24697 snRNA snRNA MGP_C3HHeJ_T0014646.1 MGP_C3HHeJ_G0012750.1 mouse_genomes_project 4 147455617 149390840 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014316.1 MGP_C3HHeJ_G0012420.1 mouse_genomes_project 4 25880449 25880866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007873.1 MGP_C3HHeJ_G0006426.1 mouse_genomes_project 4 127692115 127719533 + A630031M04Rik lincRNA lincRNA MGP_C3HHeJ_T0102017.1 MGP_C3HHeJ_G0039982.1 mouse_genomes_project 4 122511269 122519228 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014256.1 MGP_C3HHeJ_G0012360.1 mouse_genomes_project 4 12040579 12040906 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014608.1 MGP_C3HHeJ_G0012712.1 mouse_genomes_project 4 132557905 132558592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014332.1 MGP_C3HHeJ_G0012436.1 mouse_genomes_project 4 30943474 30943873 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101995.1 MGP_C3HHeJ_G0039960.1 mouse_genomes_project 4 88313402 88313910 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099413.1 MGP_C3HHeJ_G0037607.1 mouse_genomes_project 4 158052047 158052149 - Gm22573 snRNA snRNA MGP_C3HHeJ_T0007890.1 MGP_C3HHeJ_G0006438.1 mouse_genomes_project 4 131320920 131355107 + Gm12973 lincRNA lincRNA MGP_C3HHeJ_T0067888.1 MGP_C3HHeJ_G0028563.1 mouse_genomes_project 4 132734100 132735289 - MGP_C3HHeJ_P0067888 Rab42 protein_coding protein_coding MGP_C3HHeJ_T0014574.1 MGP_C3HHeJ_G0012678.1 mouse_genomes_project 4 121493828 121494266 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068255.1 MGP_C3HHeJ_G0028646.1 mouse_genomes_project 4 136463355 136526900 + MGP_C3HHeJ_P0068255 Myom3 protein_coding protein_coding MGP_C3HHeJ_T0068256.1 MGP_C3HHeJ_G0028646.1 mouse_genomes_project 4 136505780 136526900 + Myom3 protein_coding retained_intron MGP_C3HHeJ_T0068257.1 MGP_C3HHeJ_G0028646.1 mouse_genomes_project 4 136509069 136515090 + Myom3 protein_coding retained_intron MGP_C3HHeJ_T0007877.1 MGP_C3HHeJ_G0006430.1 mouse_genomes_project 4 129257887 129265759 - 1700086P04Rik lincRNA lincRNA MGP_C3HHeJ_T0065263.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826103 44841029 + MGP_C3HHeJ_P0065263 Nans protein_coding protein_coding MGP_C3HHeJ_T0065264.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826174 44831992 + Nans protein_coding processed_transcript MGP_C3HHeJ_T0065265.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826229 44835938 + Nans protein_coding processed_transcript MGP_C3HHeJ_T0065266.1 MGP_C3HHeJ_G0027959.1 mouse_genomes_project 4 44826840 44837601 + Nans protein_coding processed_transcript MGP_C3HHeJ_T0065708.1 MGP_C3HHeJ_G0028082.1 mouse_genomes_project 4 72832005 72912332 - MGP_C3HHeJ_P0065708 Rasef protein_coding protein_coding MGP_C3HHeJ_T0065709.1 MGP_C3HHeJ_G0028082.1 mouse_genomes_project 4 72832005 72912439 - MGP_C3HHeJ_P0065709 Rasef protein_coding protein_coding MGP_C3HHeJ_T0064505.1 MGP_C3HHeJ_G0027796.1 mouse_genomes_project 4 19569242 19575688 - MGP_C3HHeJ_P0064505 Pou3f2 protein_coding protein_coding MGP_C3HHeJ_T0065747.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80191847 80195409 + MGP_C3HHeJ_P0065747 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0065748.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80191954 80209495 + MGP_C3HHeJ_P0065748 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0065749.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80192031 80209496 + MGP_C3HHeJ_P0065749 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0065750.1 MGP_C3HHeJ_G0028091.1 mouse_genomes_project 4 80204363 80208777 + MGP_C3HHeJ_P0065750 Tyrp1 protein_coding protein_coding MGP_C3HHeJ_T0010503.1 MGP_C3HHeJ_G0008636.1 mouse_genomes_project 4 41825339 41825472 + Gm25262 miRNA miRNA MGP_C3HHeJ_T0010501.1 MGP_C3HHeJ_G0008634.1 mouse_genomes_project 4 38637128 38637207 + Mir207 miRNA miRNA MGP_C3HHeJ_T0064648.1 MGP_C3HHeJ_G0027829.1 mouse_genomes_project 4 32300469 32314062 - MGP_C3HHeJ_P0064648 Gm136 protein_coding protein_coding MGP_C3HHeJ_T0004496.1 MGP_C3HHeJ_G0003901.1 mouse_genomes_project 4 142531713 142543873 + Gm13075 antisense antisense MGP_C3HHeJ_T0004497.1 MGP_C3HHeJ_G0003901.1 mouse_genomes_project 4 142531741 142545049 + Gm13075 antisense antisense MGP_C3HHeJ_T0017845.1 MGP_C3HHeJ_G0015322.1 mouse_genomes_project 4 95728391 95738048 - 9530080O11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017846.1 MGP_C3HHeJ_G0015322.1 mouse_genomes_project 4 95728919 95737428 - 9530080O11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064531.1 MGP_C3HHeJ_G0027802.1 mouse_genomes_project 4 22377350 22410193 - Ufl1 protein_coding retained_intron MGP_C3HHeJ_T0064532.1 MGP_C3HHeJ_G0027802.1 mouse_genomes_project 4 22379220 22410185 - MGP_C3HHeJ_P0064532 Ufl1 protein_coding protein_coding MGP_C3HHeJ_T0064533.1 MGP_C3HHeJ_G0027802.1 mouse_genomes_project 4 22397644 22410181 - Ufl1 protein_coding processed_transcript MGP_C3HHeJ_T0004451.1 MGP_C3HHeJ_G0003865.1 mouse_genomes_project 4 122993473 122994456 - Gm12923 antisense antisense MGP_C3HHeJ_T0001377.1 MGP_C3HHeJ_G0001308.1 mouse_genomes_project 4 42946605 42948916 + TEC TEC MGP_C3HHeJ_T0065861.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85954184 86042493 - Saxo1 protein_coding processed_transcript MGP_C3HHeJ_T0065862.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85954184 86061686 - MGP_C3HHeJ_P0065862 Saxo1 protein_coding protein_coding MGP_C3HHeJ_T0065863.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85984250 86061378 - Saxo1 protein_coding processed_transcript MGP_C3HHeJ_T0065864.1 MGP_C3HHeJ_G0028106.1 mouse_genomes_project 4 85986838 86061711 - Saxo1 protein_coding processed_transcript MGP_C3HHeJ_T0001389.1 MGP_C3HHeJ_G0001320.1 mouse_genomes_project 4 137418437 137421818 + TEC TEC MGP_C3HHeJ_T0068486.1 MGP_C3HHeJ_G0028699.1 mouse_genomes_project 4 139708951 139717216 - MGP_C3HHeJ_P0068486 Pla2g2f protein_coding protein_coding MGP_C3HHeJ_T0014541.1 MGP_C3HHeJ_G0012645.1 mouse_genomes_project 4 111525189 111526237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067058.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119044371 119047153 - MGP_C3HHeJ_P0067058 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067059.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119045289 119047469 - MGP_C3HHeJ_P0067059 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067060.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119045447 119046387 - MGP_C3HHeJ_P0067060 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067061.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119045497 119046714 - MGP_C3HHeJ_P0067061 Tmem125 protein_coding protein_coding MGP_C3HHeJ_T0067062.1 MGP_C3HHeJ_G0028368.1 mouse_genomes_project 4 119046026 119046674 - Tmem125 protein_coding processed_transcript MGP_C3HHeJ_T0068774.1 MGP_C3HHeJ_G0028782.1 mouse_genomes_project 4 145606950 145613257 - MGP_C3HHeJ_P0068774 protein_coding protein_coding MGP_C3HHeJ_T0014265.1 MGP_C3HHeJ_G0012369.1 mouse_genomes_project 4 13301996 13303057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004535.1 MGP_C3HHeJ_G0003930.1 mouse_genomes_project 4 156903526 156906532 + Gm13134 antisense antisense MGP_C3HHeJ_T0004536.1 MGP_C3HHeJ_G0003930.1 mouse_genomes_project 4 156903644 156905034 + Gm13134 antisense antisense MGP_C3HHeJ_T0007845.1 MGP_C3HHeJ_G0006407.1 mouse_genomes_project 4 114930958 114931602 - Gm28864 lincRNA lincRNA MGP_C3HHeJ_T0067277.1 MGP_C3HHeJ_G0028435.1 mouse_genomes_project 4 123142401 123158710 + MGP_C3HHeJ_P0067277 Heyl protein_coding protein_coding MGP_C3HHeJ_T0067278.1 MGP_C3HHeJ_G0028435.1 mouse_genomes_project 4 123142698 123149510 + Heyl protein_coding processed_transcript MGP_C3HHeJ_T0067279.1 MGP_C3HHeJ_G0028435.1 mouse_genomes_project 4 123148607 123154825 + Heyl protein_coding processed_transcript MGP_C3HHeJ_T0065643.1 MGP_C3HHeJ_G0028064.1 mouse_genomes_project 4 62295797 62332578 - MGP_C3HHeJ_P0065643 Akna protein_coding protein_coding MGP_C3HHeJ_T0065644.1 MGP_C3HHeJ_G0028064.1 mouse_genomes_project 4 62308596 62309876 - Akna protein_coding processed_transcript MGP_C3HHeJ_T0067130.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119833389 119853890 - MGP_C3HHeJ_P0067130 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067131.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119833389 119853952 - MGP_C3HHeJ_P0067131 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067132.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119833389 119853903 - MGP_C3HHeJ_P0067132 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067133.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119839993 119853823 - MGP_C3HHeJ_P0067133 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067134.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119840566 119853890 - MGP_C3HHeJ_P0067134 Ppih protein_coding protein_coding MGP_C3HHeJ_T0067135.1 MGP_C3HHeJ_G0028394.1 mouse_genomes_project 4 119844729 119853905 - MGP_C3HHeJ_P0067135 Ppih protein_coding protein_coding MGP_C3HHeJ_T0066820.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117007337 117010885 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0066821.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117007413 117010950 + MGP_C3HHeJ_P0066821 Ccdc17 protein_coding protein_coding MGP_C3HHeJ_T0066822.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117007486 117008884 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0066823.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117008443 117010906 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0066824.1 MGP_C3HHeJ_G0028324.1 mouse_genomes_project 4 117009175 117009848 + Ccdc17 protein_coding processed_transcript MGP_C3HHeJ_T0017808.1 MGP_C3HHeJ_G0015296.1 mouse_genomes_project 4 13070243 13178385 + A530072M11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0004520.1 MGP_C3HHeJ_G0003917.1 mouse_genomes_project 4 151369664 151370107 + Ube4bos2 antisense antisense MGP_C3HHeJ_T0064415.1 MGP_C3HHeJ_G0027769.1 mouse_genomes_project 4 11844742 12035062 - MGP_C3HHeJ_P0064415 Necab1 protein_coding protein_coding MGP_C3HHeJ_T0064416.1 MGP_C3HHeJ_G0027769.1 mouse_genomes_project 4 11847426 12035982 - MGP_C3HHeJ_P0064416 Necab1 protein_coding protein_coding MGP_C3HHeJ_T0064417.1 MGP_C3HHeJ_G0027769.1 mouse_genomes_project 4 12002881 12034892 - Necab1 protein_coding processed_transcript MGP_C3HHeJ_T0067377.1 MGP_C3HHeJ_G0028459.1 mouse_genomes_project 4 125087026 125095638 + MGP_C3HHeJ_P0067377 Snip1 protein_coding protein_coding MGP_C3HHeJ_T0067378.1 MGP_C3HHeJ_G0028459.1 mouse_genomes_project 4 125087056 125092897 + Snip1 protein_coding processed_transcript MGP_C3HHeJ_T0004423.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107923968 107928882 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0004424.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107923968 107942128 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0004425.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107925927 107942080 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0004426.1 MGP_C3HHeJ_G0003844.1 mouse_genomes_project 4 107928741 107942116 - Lrp8os2 antisense antisense MGP_C3HHeJ_T0014226.1 MGP_C3HHeJ_G0012330.1 mouse_genomes_project 4 1643854 1644222 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066678.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115330236 115345622 + MGP_C3HHeJ_P0066678 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066679.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115331248 115337419 + MGP_C3HHeJ_P0066679 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066680.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115331621 115345094 + MGP_C3HHeJ_P0066680 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066681.1 MGP_C3HHeJ_G0028290.1 mouse_genomes_project 4 115333319 115344329 + MGP_C3HHeJ_P0066681 Tal1 protein_coding protein_coding MGP_C3HHeJ_T0066035.1 MGP_C3HHeJ_G0028159.1 mouse_genomes_project 4 96348631 96371650 - MGP_C3HHeJ_P0066035 Cyp2j9 protein_coding protein_coding MGP_C3HHeJ_T0066036.1 MGP_C3HHeJ_G0028159.1 mouse_genomes_project 4 96356407 96371650 - Cyp2j9 protein_coding retained_intron MGP_C3HHeJ_T0069458.1 MGP_C3HHeJ_G0028924.1 mouse_genomes_project 4 158026041 158028181 + MGP_C3HHeJ_P0069458 Fndc10 protein_coding protein_coding MGP_C3HHeJ_T0068372.1 MGP_C3HHeJ_G0028675.1 mouse_genomes_project 4 138092141 138115249 + MGP_C3HHeJ_P0068372 Wnt4 protein_coding protein_coding MGP_C3HHeJ_T0004467.1 MGP_C3HHeJ_G0003877.1 mouse_genomes_project 4 129741133 129758969 - Gm12979 antisense antisense MGP_C3HHeJ_T0007897.1 MGP_C3HHeJ_G0006443.1 mouse_genomes_project 4 132450325 132451109 + Gm13063 lincRNA lincRNA MGP_C3HHeJ_T0065589.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61354626 61375017 - MGP_C3HHeJ_P0065589 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065590.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61355628 61375017 - MGP_C3HHeJ_P0065590 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065591.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61355628 61364537 - MGP_C3HHeJ_P0065591 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065592.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61355628 61375017 - MGP_C3HHeJ_P0065592 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065593.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61361765 61363498 - Wdr31 protein_coding retained_intron MGP_C3HHeJ_T0065594.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61362610 61364978 - Wdr31 protein_coding retained_intron MGP_C3HHeJ_T0065595.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61367472 61375026 - MGP_C3HHeJ_P0065595 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0065596.1 MGP_C3HHeJ_G0028052.1 mouse_genomes_project 4 61368127 61375004 - MGP_C3HHeJ_P0065596 Wdr31 protein_coding protein_coding MGP_C3HHeJ_T0064434.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14831671 15100061 + MGP_C3HHeJ_P0064434 Mmp16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064435.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14831869 14980124 + MGP_C3HHeJ_P0064435 Mmp16 protein_coding protein_coding MGP_C3HHeJ_T0064436.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14832220 15101748 + MGP_C3HHeJ_P0064436 Mmp16 protein_coding protein_coding MGP_C3HHeJ_T0064437.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 14832355 15031218 + Mmp16 protein_coding retained_intron MGP_C3HHeJ_T0064438.1 MGP_C3HHeJ_G0027776.1 mouse_genomes_project 4 15028285 15074459 + Mmp16 protein_coding retained_intron MGP_C3HHeJ_T0100600.1 MGP_C3HHeJ_G0038794.1 mouse_genomes_project 4 1411003 1411135 + Gm26436 snoRNA snoRNA MGP_C3HHeJ_T0102013.1 MGP_C3HHeJ_G0039978.1 mouse_genomes_project 4 119358354 119359308 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007812.1 MGP_C3HHeJ_G0006383.1 mouse_genomes_project 4 94836677 94839015 - 4930551L18Rik lincRNA lincRNA MGP_C3HHeJ_T0100686.1 MGP_C3HHeJ_G0038880.1 mouse_genomes_project 4 156412018 156412162 + Gm26036 snoRNA snoRNA MGP_C3HHeJ_T0014236.1 MGP_C3HHeJ_G0012340.1 mouse_genomes_project 4 5356300 5357250 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064649.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333304 - MGP_C3HHeJ_P0064649 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064650.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333319 - MGP_C3HHeJ_P0064650 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064651.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333426 - MGP_C3HHeJ_P0064651 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064652.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333292 - MGP_C3HHeJ_P0064652 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064653.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323477 32333225 - MGP_C3HHeJ_P0064653 Smim8 protein_coding protein_coding MGP_C3HHeJ_T0064654.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32323488 32333286 - Smim8 protein_coding processed_transcript MGP_C3HHeJ_T0064655.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32325701 32333310 - Smim8 protein_coding retained_intron MGP_C3HHeJ_T0064656.1 MGP_C3HHeJ_G0027830.1 mouse_genomes_project 4 32326059 32333173 - Smim8 protein_coding processed_transcript MGP_C3HHeJ_T0007743.1 MGP_C3HHeJ_G0006325.1 mouse_genomes_project 4 38222415 38226901 + 4930509K18Rik lincRNA lincRNA MGP_C3HHeJ_T0067000.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118393621 118399800 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067001.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118393621 118413664 - MGP_C3HHeJ_P0067001 Ipo13 protein_coding protein_coding MGP_C3HHeJ_T0067002.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118393762 118394250 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067003.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118394027 118395009 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067004.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118394475 118395028 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0067005.1 MGP_C3HHeJ_G0028356.1 mouse_genomes_project 4 118400092 118403005 - Ipo13 protein_coding processed_transcript MGP_C3HHeJ_T0068038.1 MGP_C3HHeJ_G0028599.1 mouse_genomes_project 4 134202601 134214798 - MGP_C3HHeJ_P0068038 Pigv protein_coding protein_coding MGP_C3HHeJ_T0068039.1 MGP_C3HHeJ_G0028599.1 mouse_genomes_project 4 134204459 134214798 - MGP_C3HHeJ_P0068039 Pigv protein_coding protein_coding MGP_C3HHeJ_T0068040.1 MGP_C3HHeJ_G0028599.1 mouse_genomes_project 4 134210898 134214798 - Pigv protein_coding processed_transcript MGP_C3HHeJ_T0014377.1 MGP_C3HHeJ_G0012481.1 mouse_genomes_project 4 48571239 48571734 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010556.1 MGP_C3HHeJ_G0008689.1 mouse_genomes_project 4 139060063 139060147 + Mir6399 miRNA miRNA MGP_C3HHeJ_T0007789.1 MGP_C3HHeJ_G0006364.1 mouse_genomes_project 4 71102168 71118085 + lincRNA lincRNA MGP_C3HHeJ_T0068941.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150959523 151111904 - MGP_C3HHeJ_P0068941 Pex14 protein_coding protein_coding MGP_C3HHeJ_T0068942.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150962226 151111844 - Pex14 protein_coding retained_intron MGP_C3HHeJ_T0068943.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150982969 151111843 - Pex14 protein_coding processed_transcript MGP_C3HHeJ_T0068944.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 150983720 151111837 - MGP_C3HHeJ_P0068944 Pex14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068945.1 MGP_C3HHeJ_G0028834.1 mouse_genomes_project 4 151015822 151111856 - Pex14 protein_coding processed_transcript MGP_C3HHeJ_T0014391.1 MGP_C3HHeJ_G0012495.1 mouse_genomes_project 4 53219640 53220208 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014606.1 MGP_C3HHeJ_G0012710.1 mouse_genomes_project 4 132557900 132558592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100604.1 MGP_C3HHeJ_G0038798.1 mouse_genomes_project 4 10947631 10947763 - Gm24068 snoRNA snoRNA MGP_C3HHeJ_T0064312.1 MGP_C3HHeJ_G0027745.1 mouse_genomes_project 4 7742980 7764205 - MGP_C3HHeJ_P0064312 Plekhf2 protein_coding protein_coding MGP_C3HHeJ_T0064313.1 MGP_C3HHeJ_G0027745.1 mouse_genomes_project 4 7745838 7764456 - MGP_C3HHeJ_P0064313 Plekhf2 protein_coding protein_coding MGP_C3HHeJ_T0010489.1 MGP_C3HHeJ_G0008622.1 mouse_genomes_project 4 10106710 10106776 - Gm26250 miRNA miRNA MGP_C3HHeJ_T0068382.1 MGP_C3HHeJ_G0028681.1 mouse_genomes_project 4 138443874 138446367 - MGP_C3HHeJ_P0068382 Ldlrad2 protein_coding protein_coding MGP_C3HHeJ_T0007725.1 MGP_C3HHeJ_G0006308.1 mouse_genomes_project 4 13376812 13424940 + Gm11861 lincRNA lincRNA MGP_C3HHeJ_T0004528.1 MGP_C3HHeJ_G0003923.1 mouse_genomes_project 4 152666593 152670432 - antisense antisense MGP_C3HHeJ_T0069529.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158231755 158246546 + MGP_C3HHeJ_P0069529 Acap3 protein_coding protein_coding MGP_C3HHeJ_T0069530.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158231808 158246547 + MGP_C3HHeJ_P0069530 Acap3 protein_coding protein_coding MGP_C3HHeJ_T0069531.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158231835 158238776 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069532.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158232205 158238918 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069533.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158232245 158246547 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069534.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158240891 158241994 + Acap3 protein_coding retained_intron MGP_C3HHeJ_T0069535.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158241882 158244401 + Acap3 protein_coding retained_intron MGP_C3HHeJ_T0069536.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158242544 158244632 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0069537.1 MGP_C3HHeJ_G0028940.1 mouse_genomes_project 4 158244649 158245208 + Acap3 protein_coding processed_transcript MGP_C3HHeJ_T0007947.1 MGP_C3HHeJ_G0006483.1 mouse_genomes_project 4 155458085 155458505 + Gm13174 lincRNA lincRNA MGP_C3HHeJ_T0010496.1 MGP_C3HHeJ_G0008629.1 mouse_genomes_project 4 28077275 28077384 - Gm22831 miRNA miRNA MGP_C3HHeJ_T0068560.1 MGP_C3HHeJ_G0028717.1 mouse_genomes_project 4 140620762 140683387 + MGP_C3HHeJ_P0068560 Gm21969 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014594.1 MGP_C3HHeJ_G0012698.1 mouse_genomes_project 4 126610090 126610422 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066913.1 MGP_C3HHeJ_G0028340.1 mouse_genomes_project 4 117582643 117584201 + MGP_C3HHeJ_P0066913 Tctex1d4 protein_coding protein_coding MGP_C3HHeJ_T0066914.1 MGP_C3HHeJ_G0028340.1 mouse_genomes_project 4 117582662 117584602 + MGP_C3HHeJ_P0066914 Tctex1d4 protein_coding protein_coding MGP_C3HHeJ_T0066915.1 MGP_C3HHeJ_G0028340.1 mouse_genomes_project 4 117583023 117584380 + MGP_C3HHeJ_P0066915 Tctex1d4 protein_coding protein_coding MGP_C3HHeJ_T0065340.1 MGP_C3HHeJ_G0027977.1 mouse_genomes_project 4 47076624 47086574 + MGP_C3HHeJ_P0065340 Murc protein_coding protein_coding MGP_C3HHeJ_T0007924.1 MGP_C3HHeJ_G0006461.1 mouse_genomes_project 4 140982442 140999449 - 4933427I22Rik lincRNA lincRNA MGP_C3HHeJ_T0007925.1 MGP_C3HHeJ_G0006461.1 mouse_genomes_project 4 140983014 140989295 - 4933427I22Rik lincRNA lincRNA MGP_C3HHeJ_T0014591.1 MGP_C3HHeJ_G0012695.1 mouse_genomes_project 4 124722314 124722953 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066964.1 MGP_C3HHeJ_G0028350.1 mouse_genomes_project 4 118251378 118260034 - MGP_C3HHeJ_P0066964 Klf17 protein_coding protein_coding MGP_C3HHeJ_T0100681.1 MGP_C3HHeJ_G0038875.1 mouse_genomes_project 4 132790091 132790296 - Snora73a snoRNA snoRNA MGP_C3HHeJ_T0099374.1 MGP_C3HHeJ_G0037568.1 mouse_genomes_project 4 108677534 108677641 - Gm25827 snRNA snRNA MGP_C3HHeJ_T0065805.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82841945 82873857 - MGP_C3HHeJ_P0065805 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065806.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82844340 82847743 - Psip1 protein_coding retained_intron MGP_C3HHeJ_T0065807.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82849321 82852415 - MGP_C3HHeJ_P0065807 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065808.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82849321 82873856 - MGP_C3HHeJ_P0065808 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065809.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82849321 82873851 - MGP_C3HHeJ_P0065809 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0065810.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82850280 82852494 - Psip1 protein_coding retained_intron MGP_C3HHeJ_T0065812.1 MGP_C3HHeJ_G0028100.1 mouse_genomes_project 4 82863745 82873576 - MGP_C3HHeJ_P0065812 Psip1 protein_coding protein_coding MGP_C3HHeJ_T0007746.1 MGP_C3HHeJ_G0006328.1 mouse_genomes_project 4 39708628 39709034 + Gm21980 lincRNA lincRNA MGP_C3HHeJ_T0068680.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142729153 142757099 - MGP_C3HHeJ_P0068680 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068681.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142729153 142755405 - MGP_C3HHeJ_P0068681 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068682.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142729153 142763245 - MGP_C3HHeJ_P0068682 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068683.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744680 142757010 - MGP_C3HHeJ_P0068683 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068684.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744702 142763289 - MGP_C3HHeJ_P0068684 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068685.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744702 142763230 - MGP_C3HHeJ_P0068685 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068686.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142744725 142755698 - MGP_C3HHeJ_P0068686 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068687.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745367 142757208 - MGP_C3HHeJ_P0068687 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068688.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745430 142753641 - Fblim1 protein_coding processed_transcript MGP_C3HHeJ_T0068689.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745446 142757063 - MGP_C3HHeJ_P0068689 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068690.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745447 142755405 - MGP_C3HHeJ_P0068690 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068691.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142745457 142755387 - MGP_C3HHeJ_P0068691 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068692.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142752371 142763218 - MGP_C3HHeJ_P0068692 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068693.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142752422 142763229 - MGP_C3HHeJ_P0068693 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0068694.1 MGP_C3HHeJ_G0028748.1 mouse_genomes_project 4 142752489 142763220 - MGP_C3HHeJ_P0068694 Fblim1 protein_coding protein_coding MGP_C3HHeJ_T0064659.1 MGP_C3HHeJ_G0027832.1 mouse_genomes_project 4 32459314 32472418 + MGP_C3HHeJ_P0064659 Cga protein_coding protein_coding MGP_C3HHeJ_T0064660.1 MGP_C3HHeJ_G0027832.1 mouse_genomes_project 4 32459323 32472180 + MGP_C3HHeJ_P0064660 Cga protein_coding protein_coding MGP_C3HHeJ_T0064661.1 MGP_C3HHeJ_G0027832.1 mouse_genomes_project 4 32459323 32472226 + MGP_C3HHeJ_P0064661 Cga protein_coding protein_coding MGP_C3HHeJ_T0068956.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151169967 151186613 - MGP_C3HHeJ_P0068956 Pgd protein_coding protein_coding MGP_C3HHeJ_T0068957.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151175135 151179925 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0068958.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151179852 151186677 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0068959.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151180218 151181589 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0068960.1 MGP_C3HHeJ_G0028838.1 mouse_genomes_project 4 151181318 151186566 - Pgd protein_coding retained_intron MGP_C3HHeJ_T0014382.1 MGP_C3HHeJ_G0012486.1 mouse_genomes_project 4 50882275 50883664 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066062.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230030 98243989 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066063.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230036 98568195 + MGP_C3HHeJ_P0066063 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066064.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230100 98394488 + MGP_C3HHeJ_P0066064 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066065.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230100 98516727 + MGP_C3HHeJ_P0066065 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066066.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98230137 98298493 + MGP_C3HHeJ_P0066066 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066067.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98255253 98271614 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066068.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98276694 98280876 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066069.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98280814 98342904 + MGP_C3HHeJ_P0066069 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066070.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98291699 98566950 + MGP_C3HHeJ_P0066070 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066071.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98340326 98353450 + Inadl protein_coding processed_transcript MGP_C3HHeJ_T0066072.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98365492 98379051 + MGP_C3HHeJ_P0066072 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066073.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98386569 98568195 + MGP_C3HHeJ_P0066073 Inadl protein_coding protein_coding MGP_C3HHeJ_T0066074.1 MGP_C3HHeJ_G0028166.1 mouse_genomes_project 4 98386808 98532296 + MGP_C3HHeJ_P0066074 Inadl protein_coding protein_coding MGP_C3HHeJ_T0099384.1 MGP_C3HHeJ_G0037578.1 mouse_genomes_project 4 120072143 120072250 + Rnu6-ps2 snRNA snRNA MGP_C3HHeJ_T0068772.1 MGP_C3HHeJ_G0028780.1 mouse_genomes_project 4 145606949 145613330 - MGP_C3HHeJ_P0068772 Gm10436 protein_coding protein_coding MGP_C3HHeJ_T0007918.1 MGP_C3HHeJ_G0006455.1 mouse_genomes_project 4 137968705 137974703 - Gm13003 lincRNA lincRNA MGP_C3HHeJ_T0065813.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926785 83270050 + MGP_C3HHeJ_P0065813 Ccdc171 protein_coding protein_coding MGP_C3HHeJ_T0065814.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926837 83269827 + MGP_C3HHeJ_P0065814 Ccdc171 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065815.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926854 82952851 + MGP_C3HHeJ_P0065815 Ccdc171 protein_coding protein_coding MGP_C3HHeJ_T0065816.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82926879 83269965 + MGP_C3HHeJ_P0065816 Ccdc171 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065817.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 82947161 82959879 + Ccdc171 protein_coding processed_transcript MGP_C3HHeJ_T0065818.1 MGP_C3HHeJ_G0028101.1 mouse_genomes_project 4 83091847 83201168 + Ccdc171 protein_coding processed_transcript MGP_C3HHeJ_T0097904.1 MGP_C3HHeJ_G0036116.1 mouse_genomes_project 4 98600909 98600997 + pseudogene pseudogene MGP_C3HHeJ_T0004500.1 MGP_C3HHeJ_G0003903.1 mouse_genomes_project 4 143017250 143019911 + Ctrcos antisense antisense MGP_C3HHeJ_T0102011.1 MGP_C3HHeJ_G0039976.1 mouse_genomes_project 4 117601791 117605172 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017838.1 MGP_C3HHeJ_G0015316.1 mouse_genomes_project 4 89061753 89081623 + Gm12609 processed_transcript processed_transcript MGP_C3HHeJ_T0066178.1 MGP_C3HHeJ_G0028195.1 mouse_genomes_project 4 101930444 101934575 + MGP_C3HHeJ_P0066178 protein_coding protein_coding MGP_C3HHeJ_T0066179.1 MGP_C3HHeJ_G0028195.1 mouse_genomes_project 4 101930678 101933606 + protein_coding processed_transcript MGP_C3HHeJ_T0066180.1 MGP_C3HHeJ_G0028195.1 mouse_genomes_project 4 101932849 101934761 + MGP_C3HHeJ_P0066180 protein_coding protein_coding MGP_C3HHeJ_T0014426.1 MGP_C3HHeJ_G0012530.1 mouse_genomes_project 4 70401490 70401927 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099347.1 MGP_C3HHeJ_G0037541.1 mouse_genomes_project 4 43838751 43838858 + Gm22055 snRNA snRNA MGP_C3HHeJ_T0068987.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151499011 151516915 - MGP_C3HHeJ_P0068987 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0068988.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151499997 151516911 - MGP_C3HHeJ_P0068988 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0068989.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151500037 151516885 - MGP_C3HHeJ_P0068989 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0068990.1 MGP_C3HHeJ_G0028842.1 mouse_genomes_project 4 151506145 151516876 - MGP_C3HHeJ_P0068990 Nmnat1 protein_coding protein_coding MGP_C3HHeJ_T0014508.1 MGP_C3HHeJ_G0012612.1 mouse_genomes_project 4 101117871 101118043 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014400.1 MGP_C3HHeJ_G0012504.1 mouse_genomes_project 4 54768627 54768943 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066741.1 MGP_C3HHeJ_G0028308.1 mouse_genomes_project 4 116266427 116275046 + MGP_C3HHeJ_P0066741 6430628N08Rik protein_coding protein_coding MGP_C3HHeJ_T0014609.1 MGP_C3HHeJ_G0012713.1 mouse_genomes_project 4 132634561 132634953 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004532.1 MGP_C3HHeJ_G0003927.1 mouse_genomes_project 4 156212732 156220706 - antisense antisense MGP_C3HHeJ_T0011468.1 MGP_C3HHeJ_G0009601.1 mouse_genomes_project 4 45960440 45960567 + Gm27601 misc_RNA misc_RNA MGP_C3HHeJ_T0065572.1 MGP_C3HHeJ_G0028046.1 mouse_genomes_project 4 61187711 61198191 + MGP_C3HHeJ_P0065572 Slc31a2 protein_coding protein_coding MGP_C3HHeJ_T0099366.1 MGP_C3HHeJ_G0037560.1 mouse_genomes_project 4 96718536 96718600 + Gm27521 snRNA snRNA MGP_C3HHeJ_T0014559.1 MGP_C3HHeJ_G0012663.1 mouse_genomes_project 4 118222263 118222733 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100684.1 MGP_C3HHeJ_G0038878.1 mouse_genomes_project 4 144446609 144446741 + Gm22039 snoRNA snoRNA MGP_C3HHeJ_T0004385.1 MGP_C3HHeJ_G0003816.1 mouse_genomes_project 4 55813300 55817784 + Gm12530 antisense antisense MGP_C3HHeJ_T0004371.1 MGP_C3HHeJ_G0003804.1 mouse_genomes_project 4 41825453 41835385 - Gm12473 antisense antisense MGP_C3HHeJ_T0017805.1 MGP_C3HHeJ_G0015295.1 mouse_genomes_project 4 8785125 8812767 + 1700123M08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017806.1 MGP_C3HHeJ_G0015295.1 mouse_genomes_project 4 8785134 8812486 + 1700123M08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017807.1 MGP_C3HHeJ_G0015295.1 mouse_genomes_project 4 8798722 8800220 + 1700123M08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0064493.1 MGP_C3HHeJ_G0027793.1 mouse_genomes_project 4 18930781 18969822 + MGP_C3HHeJ_P0064493 Coq3 protein_coding protein_coding MGP_C3HHeJ_T0064494.1 MGP_C3HHeJ_G0027793.1 mouse_genomes_project 4 18951723 18953457 + Coq3 protein_coding processed_transcript MGP_C3HHeJ_T0007706.1 MGP_C3HHeJ_G0006294.1 mouse_genomes_project 4 297173 304145 + 2210414B05Rik lincRNA lincRNA MGP_C3HHeJ_T0064524.1 MGP_C3HHeJ_G0027799.1 mouse_genomes_project 4 22039945 22046864 + MGP_C3HHeJ_P0064524 Ndufaf4 protein_coding protein_coding MGP_C3HHeJ_T0064525.1 MGP_C3HHeJ_G0027799.1 mouse_genomes_project 4 22039993 22045368 + Ndufaf4 protein_coding processed_transcript MGP_C3HHeJ_T0064526.1 MGP_C3HHeJ_G0027799.1 mouse_genomes_project 4 22040038 22045348 + MGP_C3HHeJ_P0064526 Ndufaf4 protein_coding protein_coding MGP_C3HHeJ_T0066814.1 MGP_C3HHeJ_G0028322.1 mouse_genomes_project 4 116949385 116954441 - MGP_C3HHeJ_P0066814 Tmem69 protein_coding protein_coding MGP_C3HHeJ_T0066815.1 MGP_C3HHeJ_G0028322.1 mouse_genomes_project 4 116949657 116951620 - Tmem69 protein_coding processed_transcript MGP_C3HHeJ_T0066816.1 MGP_C3HHeJ_G0028322.1 mouse_genomes_project 4 116951459 116954440 - MGP_C3HHeJ_P0066816 Tmem69 protein_coding protein_coding MGP_C3HHeJ_T0066360.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107340882 107360907 - MGP_C3HHeJ_P0066360 Lrrc42 protein_coding protein_coding MGP_C3HHeJ_T0066361.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107340885 107350894 - Lrrc42 protein_coding retained_intron MGP_C3HHeJ_T0066362.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107341127 107343349 - Lrrc42 protein_coding retained_intron MGP_C3HHeJ_T0066363.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107341307 107347120 - MGP_C3HHeJ_P0066363 Lrrc42 protein_coding protein_coding MGP_C3HHeJ_T0066364.1 MGP_C3HHeJ_G0028231.1 mouse_genomes_project 4 107354787 107360535 - MGP_C3HHeJ_P0066364 Lrrc42 protein_coding protein_coding MGP_C3HHeJ_T0066659.1 MGP_C3HHeJ_G0028281.1 mouse_genomes_project 4 112930226 112994008 - MGP_C3HHeJ_P0066659 Skint10 protein_coding protein_coding MGP_C3HHeJ_T0066660.1 MGP_C3HHeJ_G0028281.1 mouse_genomes_project 4 112988878 112994049 - MGP_C3HHeJ_P0066660 Skint10 protein_coding protein_coding MGP_C3HHeJ_T0066661.1 MGP_C3HHeJ_G0028281.1 mouse_genomes_project 4 112990302 112994010 - Skint10 protein_coding processed_transcript MGP_C3HHeJ_T0067199.1 MGP_C3HHeJ_G0028407.1 mouse_genomes_project 4 121095576 121100007 + MGP_C3HHeJ_P0067199 Slfnl1 protein_coding protein_coding MGP_C3HHeJ_T0011484.1 MGP_C3HHeJ_G0009617.1 mouse_genomes_project 4 115259221 115259319 + Gm24045 misc_RNA misc_RNA MGP_C3HHeJ_T0068558.1 MGP_C3HHeJ_G0028716.1 mouse_genomes_project 4 140592140 140639193 + MGP_C3HHeJ_P0068558 Iffo2 protein_coding protein_coding MGP_C3HHeJ_T0068559.1 MGP_C3HHeJ_G0028716.1 mouse_genomes_project 4 140592368 140639197 + MGP_C3HHeJ_P0068559 Iffo2 protein_coding protein_coding MGP_C3HHeJ_T0065088.1 MGP_C3HHeJ_G0027920.1 mouse_genomes_project 4 41888321 41894106 - MGP_C3HHeJ_P0065088 Olfr70 protein_coding protein_coding MGP_C3HHeJ_T0065467.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55832835 55946915 - MGP_C3HHeJ_P0065467 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0065468.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55860310 55864019 - Ptpn3 protein_coding processed_transcript MGP_C3HHeJ_T0065469.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55886990 55945453 - MGP_C3HHeJ_P0065469 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0065470.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55897591 55945993 - Ptpn3 protein_coding processed_transcript MGP_C3HHeJ_T0065471.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55907741 55946585 - MGP_C3HHeJ_P0065471 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0065472.1 MGP_C3HHeJ_G0028017.1 mouse_genomes_project 4 55912734 55945834 - MGP_C3HHeJ_P0065472 Ptpn3 protein_coding protein_coding MGP_C3HHeJ_T0068041.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134221327 134297622 - MGP_C3HHeJ_P0068041 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0068042.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134221327 134297622 - MGP_C3HHeJ_P0068042 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0068043.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134222260 134301845 - MGP_C3HHeJ_P0068043 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0068044.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134231801 134266537 - Arid1a protein_coding retained_intron MGP_C3HHeJ_T0068045.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134262834 134264256 - Arid1a protein_coding retained_intron MGP_C3HHeJ_T0068046.1 MGP_C3HHeJ_G0028600.1 mouse_genomes_project 4 134264258 134267366 - MGP_C3HHeJ_P0068046 Arid1a protein_coding protein_coding MGP_C3HHeJ_T0004376.1 MGP_C3HHeJ_G0003809.1 mouse_genomes_project 4 43278389 43282109 + 1700055D18Rik antisense antisense MGP_C3HHeJ_T0004377.1 MGP_C3HHeJ_G0003809.1 mouse_genomes_project 4 43279532 43281102 + 1700055D18Rik antisense antisense MGP_C3HHeJ_T0001379.1 MGP_C3HHeJ_G0001310.1 mouse_genomes_project 4 99172933 99175397 + TEC TEC MGP_C3HHeJ_T0067324.1 MGP_C3HHeJ_G0028444.1 mouse_genomes_project 4 123888143 123888662 - MGP_C3HHeJ_P0067324 4930535I16Rik protein_coding protein_coding MGP_C3HHeJ_T0100612.1 MGP_C3HHeJ_G0038806.1 mouse_genomes_project 4 31552798 31552885 + Gm22010 snoRNA snoRNA MGP_C3HHeJ_T0067878.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132635540 132676802 - MGP_C3HHeJ_P0067878 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067879.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132639591 132686513 - MGP_C3HHeJ_P0067879 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067880.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132641664 132676160 - MGP_C3HHeJ_P0067880 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067881.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132642316 132686594 - MGP_C3HHeJ_P0067881 Gmeb1 protein_coding protein_coding MGP_C3HHeJ_T0067882.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132648137 132652065 - Gmeb1 protein_coding retained_intron MGP_C3HHeJ_T0067883.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132653851 132669341 - Gmeb1 protein_coding retained_intron MGP_C3HHeJ_T0067884.1 MGP_C3HHeJ_G0028561.1 mouse_genomes_project 4 132676071 132678560 - Gmeb1 protein_coding processed_transcript MGP_C3HHeJ_T0067978.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133626596 133698576 + MGP_C3HHeJ_P0067978 Wasf2 protein_coding protein_coding MGP_C3HHeJ_T0067979.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133626631 133683521 + MGP_C3HHeJ_P0067979 Wasf2 protein_coding protein_coding MGP_C3HHeJ_T0067980.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133626720 133674084 + Wasf2 protein_coding processed_transcript MGP_C3HHeJ_T0067981.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133673524 133674136 + Wasf2 protein_coding processed_transcript MGP_C3HHeJ_T0067982.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133673894 133694876 + MGP_C3HHeJ_P0067982 Wasf2 protein_coding protein_coding MGP_C3HHeJ_T0067983.1 MGP_C3HHeJ_G0028582.1 mouse_genomes_project 4 133687487 133689019 + Wasf2 protein_coding processed_transcript MGP_C3HHeJ_T0068151.1 MGP_C3HHeJ_G0028621.1 mouse_genomes_project 4 134933420 134943535 + MGP_C3HHeJ_P0068151 Slc30a2 protein_coding protein_coding MGP_C3HHeJ_T0068152.1 MGP_C3HHeJ_G0028621.1 mouse_genomes_project 4 134933525 134943395 + MGP_C3HHeJ_P0068152 Slc30a2 protein_coding protein_coding MGP_C3HHeJ_T0102021.1 MGP_C3HHeJ_G0039986.1 mouse_genomes_project 4 140337461 140338652 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100629.1 MGP_C3HHeJ_G0038823.1 mouse_genomes_project 4 54042060 54042194 - Gm22150 snoRNA snoRNA MGP_C3HHeJ_T0069549.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344237 158363969 + MGP_C3HHeJ_P0069549 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069550.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344276 158367330 + MGP_C3HHeJ_P0069550 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069551.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344535 158355434 + MGP_C3HHeJ_P0069551 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069552.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158344742 158364077 + MGP_C3HHeJ_P0069552 Sdf4 protein_coding protein_coding MGP_C3HHeJ_T0069553.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158352487 158354025 + Sdf4 protein_coding retained_intron MGP_C3HHeJ_T0069554.1 MGP_C3HHeJ_G0028944.1 mouse_genomes_project 4 158362268 158363616 + Sdf4 protein_coding retained_intron MGP_C3HHeJ_T0014294.1 MGP_C3HHeJ_G0012398.1 mouse_genomes_project 4 21349464 21350666 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102014.1 MGP_C3HHeJ_G0039979.1 mouse_genomes_project 4 121984251 121987797 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014592.1 MGP_C3HHeJ_G0012696.1 mouse_genomes_project 4 125034090 125034414 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014497.1 MGP_C3HHeJ_G0012601.1 mouse_genomes_project 4 98101128 98101621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068657.1 MGP_C3HHeJ_G0028741.1 mouse_genomes_project 4 142501123 142517086 + MGP_C3HHeJ_P0068657 Fam131c protein_coding protein_coding MGP_C3HHeJ_T0014373.1 MGP_C3HHeJ_G0012477.1 mouse_genomes_project 4 47169240 47169576 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102005.1 MGP_C3HHeJ_G0039970.1 mouse_genomes_project 4 113592978 113618684 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0064564.1 MGP_C3HHeJ_G0027809.1 mouse_genomes_project 4 30039286 30041403 - MGP_C3HHeJ_P0064564 Gja10 protein_coding protein_coding MGP_C3HHeJ_T0067533.1 MGP_C3HHeJ_G0028493.1 mouse_genomes_project 4 127461447 127465646 - MGP_C3HHeJ_P0067533 Gjb3 protein_coding protein_coding MGP_C3HHeJ_T0067534.1 MGP_C3HHeJ_G0028493.1 mouse_genomes_project 4 127461447 127467329 - MGP_C3HHeJ_P0067534 Gjb3 protein_coding protein_coding MGP_C3HHeJ_T0068462.1 MGP_C3HHeJ_G0028690.1 mouse_genomes_project 4 139216771 139225846 + MGP_C3HHeJ_P0068462 Ddost protein_coding protein_coding MGP_C3HHeJ_T0014344.1 MGP_C3HHeJ_G0012448.1 mouse_genomes_project 4 35590469 35600304 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099331.1 MGP_C3HHeJ_G0037525.1 mouse_genomes_project 4 22706137 22706299 - Gm25513 snRNA snRNA MGP_C3HHeJ_T0064418.1 MGP_C3HHeJ_G0027770.1 mouse_genomes_project 4 12149392 12171237 + MGP_C3HHeJ_P0064418 Tmem64 protein_coding protein_coding MGP_C3HHeJ_T0065984.1 MGP_C3HHeJ_G0028148.1 mouse_genomes_project 4 94646027 94660731 - MGP_C3HHeJ_P0065984 Eqtn protein_coding protein_coding MGP_C3HHeJ_T0065985.1 MGP_C3HHeJ_G0028148.1 mouse_genomes_project 4 94646191 94660682 - MGP_C3HHeJ_P0065985 Eqtn protein_coding protein_coding MGP_C3HHeJ_T0064600.1 MGP_C3HHeJ_G0027818.1 mouse_genomes_project 4 30650483 30665674 - MGP_C3HHeJ_P0064600 Pm20d2 protein_coding protein_coding MGP_C3HHeJ_T0064601.1 MGP_C3HHeJ_G0027818.1 mouse_genomes_project 4 30657883 30665978 - MGP_C3HHeJ_P0064601 Pm20d2 protein_coding protein_coding MGP_C3HHeJ_T0064432.1 MGP_C3HHeJ_G0027775.1 mouse_genomes_project 4 13030057 13069765 - MGP_C3HHeJ_P0064432 Ripk2 protein_coding protein_coding MGP_C3HHeJ_T0064433.1 MGP_C3HHeJ_G0027775.1 mouse_genomes_project 4 13030065 13069761 - MGP_C3HHeJ_P0064433 Ripk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004509.1 MGP_C3HHeJ_G0003909.1 mouse_genomes_project 4 145918047 145919481 + Pramef12os antisense antisense MGP_C3HHeJ_T0064726.1 MGP_C3HHeJ_G0027849.1 mouse_genomes_project 4 38889243 38907923 + MGP_C3HHeJ_P0064726 Chmp5 protein_coding protein_coding MGP_C3HHeJ_T0010573.1 MGP_C3HHeJ_G0008706.1 mouse_genomes_project 4 158409621 158409691 - Mir200b miRNA miRNA MGP_C3HHeJ_T0066057.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98218837 - MGP_C3HHeJ_P0066057 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0066058.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98218651 - MGP_C3HHeJ_P0066058 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0066059.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98210619 - MGP_C3HHeJ_P0066059 Tm2d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066060.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191414 98218897 - MGP_C3HHeJ_P0066060 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0066061.1 MGP_C3HHeJ_G0028165.1 mouse_genomes_project 4 98191649 98218823 - MGP_C3HHeJ_P0066061 Tm2d1 protein_coding protein_coding MGP_C3HHeJ_T0065660.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62495894 62517965 + MGP_C3HHeJ_P0065660 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065661.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62495970 62499606 + protein_coding processed_transcript MGP_C3HHeJ_T0065662.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62497341 62507137 + MGP_C3HHeJ_P0065662 protein_coding protein_coding MGP_C3HHeJ_T0065663.1 MGP_C3HHeJ_G0028066.1 mouse_genomes_project 4 62497341 62507168 + MGP_C3HHeJ_P0065663 protein_coding protein_coding MGP_C3HHeJ_T0067917.1 MGP_C3HHeJ_G0028569.1 mouse_genomes_project 4 132991816 132994744 - MGP_C3HHeJ_P0067917 Atpif1 protein_coding protein_coding MGP_C3HHeJ_T0067918.1 MGP_C3HHeJ_G0028569.1 mouse_genomes_project 4 132991816 132994915 - MGP_C3HHeJ_P0067918 Atpif1 protein_coding protein_coding MGP_C3HHeJ_T0067919.1 MGP_C3HHeJ_G0028569.1 mouse_genomes_project 4 132993743 132994851 - Atpif1 protein_coding retained_intron MGP_C3HHeJ_T0014267.1 MGP_C3HHeJ_G0012371.1 mouse_genomes_project 4 13301999 13303216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065819.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83693753 84101724 - MGP_C3HHeJ_P0065819 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065820.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83693887 84101757 - MGP_C3HHeJ_P0065820 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065821.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694010 84101965 - MGP_C3HHeJ_P0065821 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065822.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694038 83710416 - MGP_C3HHeJ_P0065822 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065823.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694268 84101776 - MGP_C3HHeJ_P0065823 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065824.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694817 83710589 - MGP_C3HHeJ_P0065824 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065825.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83694903 83710805 - MGP_C3HHeJ_P0065825 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065826.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83695102 83710527 - MGP_C3HHeJ_P0065826 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065827.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83695102 83710527 - MGP_C3HHeJ_P0065827 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065828.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83711872 84101686 - MGP_C3HHeJ_P0065828 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065829.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83711872 84101686 - MGP_C3HHeJ_P0065829 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065830.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83711896 83930823 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065831.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83712235 84101717 - MGP_C3HHeJ_P0065831 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065832.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83712262 84101687 - MGP_C3HHeJ_P0065832 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065833.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83712293 83957724 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065834.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83810628 84101689 - Bnc2 protein_coding retained_intron MGP_C3HHeJ_T0065835.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83812872 84101687 - MGP_C3HHeJ_P0065835 Bnc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065836.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83812904 83970851 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065837.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83812997 84101768 - MGP_C3HHeJ_P0065837 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065838.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83833119 83970522 - MGP_C3HHeJ_P0065838 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0065839.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83833144 83948086 - Bnc2 protein_coding processed_transcript MGP_C3HHeJ_T0065840.1 MGP_C3HHeJ_G0028102.1 mouse_genomes_project 4 83970443 84101689 - MGP_C3HHeJ_P0065840 Bnc2 protein_coding protein_coding MGP_C3HHeJ_T0004417.1 MGP_C3HHeJ_G0003838.1 mouse_genomes_project 4 103012941 103021933 - BB031773 antisense antisense MGP_C3HHeJ_T0100639.1 MGP_C3HHeJ_G0038833.1 mouse_genomes_project 4 72029351 72029489 - Gm25653 snoRNA snoRNA MGP_C3HHeJ_T0014655.1 MGP_C3HHeJ_G0012759.1 mouse_genomes_project 4 151865687 151866244 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067184.1 MGP_C3HHeJ_G0028405.1 mouse_genomes_project 4 120827529 120847808 - MGP_C3HHeJ_P0067184 Foxo6 protein_coding protein_coding MGP_C3HHeJ_T0065097.1 MGP_C3HHeJ_G0027927.1 mouse_genomes_project 4 42076335 42150189 + Reck protein_coding processed_transcript MGP_C3HHeJ_T0065098.1 MGP_C3HHeJ_G0027927.1 mouse_genomes_project 4 42076335 42150250 + MGP_C3HHeJ_P0065098 Reck protein_coding protein_coding MGP_C3HHeJ_T0065099.1 MGP_C3HHeJ_G0027927.1 mouse_genomes_project 4 42145841 42147826 + Reck protein_coding processed_transcript MGP_C3HHeJ_T0066153.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335271 101389661 + MGP_C3HHeJ_P0066153 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066154.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335283 101389661 + MGP_C3HHeJ_P0066154 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066155.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335313 101389661 + MGP_C3HHeJ_P0066155 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066156.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335700 101382423 + MGP_C3HHeJ_P0066156 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066157.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101335727 101384844 + MGP_C3HHeJ_P0066157 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0066158.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101336491 101386346 + Ak4 protein_coding processed_transcript MGP_C3HHeJ_T0066159.1 MGP_C3HHeJ_G0028186.1 mouse_genomes_project 4 101366436 101386445 + MGP_C3HHeJ_P0066159 Ak4 protein_coding protein_coding MGP_C3HHeJ_T0064541.1 MGP_C3HHeJ_G0027805.1 mouse_genomes_project 4 23518646 23520581 - MGP_C3HHeJ_P0064541 protein_coding protein_coding MGP_C3HHeJ_T0065706.1 MGP_C3HHeJ_G0028081.1 mouse_genomes_project 4 71973874 71975926 - MGP_C3HHeJ_P0065706 Aldoart1 protein_coding protein_coding MGP_C3HHeJ_T0065707.1 MGP_C3HHeJ_G0028081.1 mouse_genomes_project 4 71973874 71975924 - MGP_C3HHeJ_P0065707 Aldoart1 protein_coding protein_coding MGP_C3HHeJ_T0100675.1 MGP_C3HHeJ_G0038869.1 mouse_genomes_project 4 132741316 132741453 + Snora16a snoRNA snoRNA MGP_C3HHeJ_T0068378.1 MGP_C3HHeJ_G0028679.1 mouse_genomes_project 4 138316591 138318752 + MGP_C3HHeJ_P0068378 1700013G24Rik protein_coding protein_coding MGP_C3HHeJ_T0007785.1 MGP_C3HHeJ_G0006360.1 mouse_genomes_project 4 63209883 63233782 - Gm11217 lincRNA lincRNA MGP_C3HHeJ_T0004349.1 MGP_C3HHeJ_G0003787.1 mouse_genomes_project 4 8847167 8859649 + Gm11842 antisense antisense MGP_C3HHeJ_T0069558.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379673 158382401 + MGP_C3HHeJ_P0069558 Tnfrsf18 protein_coding protein_coding MGP_C3HHeJ_T0069559.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379841 158382397 + Tnfrsf18 protein_coding retained_intron MGP_C3HHeJ_T0069560.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379851 158382397 + MGP_C3HHeJ_P0069560 Tnfrsf18 protein_coding protein_coding MGP_C3HHeJ_T0069561.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379851 158382397 + MGP_C3HHeJ_P0069561 Tnfrsf18 protein_coding protein_coding MGP_C3HHeJ_T0069562.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158379887 158381881 + Tnfrsf18 protein_coding processed_transcript MGP_C3HHeJ_T0069563.1 MGP_C3HHeJ_G0028946.1 mouse_genomes_project 4 158381877 158382401 + Tnfrsf18 protein_coding processed_transcript MGP_C3HHeJ_T0067006.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118424766 118428367 - MGP_C3HHeJ_P0067006 Artn protein_coding protein_coding MGP_C3HHeJ_T0067007.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118424767 118428101 - MGP_C3HHeJ_P0067007 Artn protein_coding protein_coding MGP_C3HHeJ_T0067008.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118426645 118428081 - Artn protein_coding processed_transcript MGP_C3HHeJ_T0067009.1 MGP_C3HHeJ_G0028357.1 mouse_genomes_project 4 118426747 118428017 - Artn protein_coding processed_transcript MGP_C3HHeJ_T0004521.1 MGP_C3HHeJ_G0003918.1 mouse_genomes_project 4 151381521 151399071 + Ube4bos1 antisense antisense MGP_C3HHeJ_T0004522.1 MGP_C3HHeJ_G0003918.1 mouse_genomes_project 4 151381550 151392729 + Ube4bos1 antisense antisense MGP_C3HHeJ_T0011465.1 MGP_C3HHeJ_G0009598.1 mouse_genomes_project 4 32228997 32229304 + Gm22849 misc_RNA misc_RNA MGP_C3HHeJ_T0066265.1 MGP_C3HHeJ_G0028211.1 mouse_genomes_project 4 105202435 105279156 + MGP_C3HHeJ_P0066265 Plpp3 protein_coding protein_coding MGP_C3HHeJ_T0067948.1 MGP_C3HHeJ_G0028574.1 mouse_genomes_project 4 133204541 133228119 - MGP_C3HHeJ_P0067948 Smpdl3b protein_coding protein_coding MGP_C3HHeJ_T0067185.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967826 121013177 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067186.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967852 121093587 + MGP_C3HHeJ_P0067186 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067187.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967911 121021751 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067188.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967926 121007373 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067189.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 120967973 121021716 + MGP_C3HHeJ_P0067189 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067190.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121005787 121093587 + MGP_C3HHeJ_P0067190 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067191.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121011904 121093565 + MGP_C3HHeJ_P0067191 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067192.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121020711 121092662 + MGP_C3HHeJ_P0067192 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067193.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121066907 121093587 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067194.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121068436 121085655 + MGP_C3HHeJ_P0067194 Scmh1 protein_coding protein_coding MGP_C3HHeJ_T0067195.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121080730 121093587 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067196.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121080783 121093204 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067197.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121091231 121092623 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0067198.1 MGP_C3HHeJ_G0028406.1 mouse_genomes_project 4 121092557 121093589 + Scmh1 protein_coding processed_transcript MGP_C3HHeJ_T0014404.1 MGP_C3HHeJ_G0012508.1 mouse_genomes_project 4 57155069 57155643 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066812.1 MGP_C3HHeJ_G0028321.1 mouse_genomes_project 4 116910003 116941923 + MGP_C3HHeJ_P0066812 Ipp protein_coding protein_coding MGP_C3HHeJ_T0066813.1 MGP_C3HHeJ_G0028321.1 mouse_genomes_project 4 116910006 116941931 + MGP_C3HHeJ_P0066813 Ipp protein_coding protein_coding MGP_C3HHeJ_T0014406.1 MGP_C3HHeJ_G0012510.1 mouse_genomes_project 4 57766170 57766915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014430.1 MGP_C3HHeJ_G0012534.1 mouse_genomes_project 4 72016939 72017537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017871.1 MGP_C3HHeJ_G0015337.1 mouse_genomes_project 4 126406685 126408324 + Gm12945 processed_transcript processed_transcript MGP_C3HHeJ_T0007888.1 MGP_C3HHeJ_G0006436.1 mouse_genomes_project 4 131103919 131108346 - Gm26516 lincRNA lincRNA MGP_C3HHeJ_T0069139.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218183 154231090 + Nol9 protein_coding retained_intron MGP_C3HHeJ_T0069140.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218189 154241313 + MGP_C3HHeJ_P0069140 Nol9 protein_coding protein_coding MGP_C3HHeJ_T0069141.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218198 154235255 + Nol9 protein_coding retained_intron MGP_C3HHeJ_T0069142.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218198 154242783 + MGP_C3HHeJ_P0069142 Nol9 protein_coding protein_coding MGP_C3HHeJ_T0069143.1 MGP_C3HHeJ_G0028872.1 mouse_genomes_project 4 154218225 154241331 + MGP_C3HHeJ_P0069143 Nol9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014524.1 MGP_C3HHeJ_G0012628.1 mouse_genomes_project 4 106319215 106319478 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064738.1 MGP_C3HHeJ_G0027852.1 mouse_genomes_project 4 39042547 39048006 - MGP_C3HHeJ_P0064738 Aqp3 protein_coding protein_coding MGP_C3HHeJ_T0064739.1 MGP_C3HHeJ_G0027852.1 mouse_genomes_project 4 39043604 39044271 - Aqp3 protein_coding retained_intron MGP_C3HHeJ_T0014245.1 MGP_C3HHeJ_G0012349.1 mouse_genomes_project 4 7907743 7908418 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065389.1 MGP_C3HHeJ_G0027996.1 mouse_genomes_project 4 51514244 51515189 + MGP_C3HHeJ_P0065389 Olfr270 protein_coding protein_coding MGP_C3HHeJ_T0065390.1 MGP_C3HHeJ_G0027996.1 mouse_genomes_project 4 51514250 51515189 + MGP_C3HHeJ_P0065390 Olfr270 protein_coding protein_coding MGP_C3HHeJ_T0014588.1 MGP_C3HHeJ_G0012692.1 mouse_genomes_project 4 123803273 123804670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098473.1 MGP_C3HHeJ_G0036678.1 mouse_genomes_project 4 94901324 94910915 + sense_intronic sense_intronic MGP_C3HHeJ_T0067390.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126074691 126094863 + MGP_C3HHeJ_P0067390 Csf3r protein_coding protein_coding MGP_C3HHeJ_T0067391.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126074867 126082036 + Csf3r protein_coding processed_transcript MGP_C3HHeJ_T0067392.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126077433 126094862 + MGP_C3HHeJ_P0067392 Csf3r protein_coding protein_coding MGP_C3HHeJ_T0067393.1 MGP_C3HHeJ_G0028463.1 mouse_genomes_project 4 126088337 126094246 + Csf3r protein_coding processed_transcript MGP_C3HHeJ_T0067056.1 MGP_C3HHeJ_G0028367.1 mouse_genomes_project 4 119028961 119031819 + MGP_C3HHeJ_P0067056 2610528J11Rik protein_coding protein_coding MGP_C3HHeJ_T0067057.1 MGP_C3HHeJ_G0028367.1 mouse_genomes_project 4 119029205 119032192 + MGP_C3HHeJ_P0067057 2610528J11Rik protein_coding protein_coding MGP_C3HHeJ_T0068138.1 MGP_C3HHeJ_G0028617.1 mouse_genomes_project 4 134839697 134842691 - MGP_C3HHeJ_P0068138 Grrp1 protein_coding protein_coding MGP_C3HHeJ_T0068139.1 MGP_C3HHeJ_G0028617.1 mouse_genomes_project 4 134840293 134841607 - Grrp1 protein_coding processed_transcript MGP_C3HHeJ_T0014599.1 MGP_C3HHeJ_G0012703.1 mouse_genomes_project 4 127273238 127273448 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065321.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670320 46695164 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0065322.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670360 46671613 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0065323.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670362 46829508 + MGP_C3HHeJ_P0065323 Invs protein_coding protein_coding MGP_C3HHeJ_T0065324.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670376 46677667 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0065325.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46670386 46824905 + MGP_C3HHeJ_P0065325 Invs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065326.1 MGP_C3HHeJ_G0027973.1 mouse_genomes_project 4 46777802 46791729 + Invs protein_coding processed_transcript MGP_C3HHeJ_T0064206.1 MGP_C3HHeJ_G0027725.1 mouse_genomes_project 4 531711 533160 - MGP_C3HHeJ_P0064206 Mos protein_coding protein_coding MGP_C3HHeJ_T0014394.1 MGP_C3HHeJ_G0012498.1 mouse_genomes_project 4 53726115 53726724 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004363.1 MGP_C3HHeJ_G0003797.1 mouse_genomes_project 4 38178252 38179610 + antisense antisense MGP_C3HHeJ_T0068287.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696139 136700546 - MGP_C3HHeJ_P0068287 Lypla2 protein_coding protein_coding MGP_C3HHeJ_T0068288.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696139 136699849 - MGP_C3HHeJ_P0068288 Lypla2 protein_coding protein_coding MGP_C3HHeJ_T0068289.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696616 136698386 - Lypla2 protein_coding retained_intron MGP_C3HHeJ_T0068290.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136696679 136700508 - Lypla2 protein_coding retained_intron MGP_C3HHeJ_T0068291.1 MGP_C3HHeJ_G0028653.1 mouse_genomes_project 4 136698565 136700523 - Lypla2 protein_coding retained_intron MGP_C3HHeJ_T0010511.1 MGP_C3HHeJ_G0008644.1 mouse_genomes_project 4 62173174 62173256 + Mir455 miRNA miRNA MGP_C3HHeJ_T0065935.1 MGP_C3HHeJ_G0028128.1 mouse_genomes_project 4 88445024 88445597 + MGP_C3HHeJ_P0065935 protein_coding protein_coding MGP_C3HHeJ_T0066790.1 MGP_C3HHeJ_G0028317.1 mouse_genomes_project 4 116547581 116553313 - MGP_C3HHeJ_P0066790 Tspan1 protein_coding protein_coding MGP_C3HHeJ_T0066791.1 MGP_C3HHeJ_G0028317.1 mouse_genomes_project 4 116549020 116553314 - MGP_C3HHeJ_P0066791 Tspan1 protein_coding protein_coding MGP_C3HHeJ_T0066792.1 MGP_C3HHeJ_G0028317.1 mouse_genomes_project 4 116549044 116550546 - Tspan1 protein_coding retained_intron MGP_C3HHeJ_T0068786.1 MGP_C3HHeJ_G0028790.1 mouse_genomes_project 4 145873245 145887893 - MGP_C3HHeJ_P0068786 Gm13125 protein_coding protein_coding MGP_C3HHeJ_T0068249.1 MGP_C3HHeJ_G0028642.1 mouse_genomes_project 4 136189796 136215832 + Stpg1 protein_coding processed_transcript MGP_C3HHeJ_T0068250.1 MGP_C3HHeJ_G0028642.1 mouse_genomes_project 4 136190980 136235668 + Stpg1 protein_coding processed_transcript MGP_C3HHeJ_T0068251.1 MGP_C3HHeJ_G0028642.1 mouse_genomes_project 4 136190990 136239481 + MGP_C3HHeJ_P0068251 Stpg1 protein_coding protein_coding MGP_C3HHeJ_T0064744.1 MGP_C3HHeJ_G0027854.1 mouse_genomes_project 4 39088519 39150079 + MGP_C3HHeJ_P0064744 Ube2r2 protein_coding protein_coding MGP_C3HHeJ_T0064745.1 MGP_C3HHeJ_G0027854.1 mouse_genomes_project 4 39139638 39147522 + Ube2r2 protein_coding retained_intron MGP_C3HHeJ_T0064746.1 MGP_C3HHeJ_G0027854.1 mouse_genomes_project 4 39145594 39147735 + Ube2r2 protein_coding retained_intron MGP_C3HHeJ_T0069043.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152260737 152278369 - MGP_C3HHeJ_P0069043 Car6 protein_coding protein_coding MGP_C3HHeJ_T0069044.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152260737 152274625 - MGP_C3HHeJ_P0069044 Car6 protein_coding protein_coding MGP_C3HHeJ_T0069045.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152260934 152272278 - Car6 protein_coding processed_transcript MGP_C3HHeJ_T0069046.1 MGP_C3HHeJ_G0028854.1 mouse_genomes_project 4 152262003 152274358 - Car6 protein_coding processed_transcript MGP_C3HHeJ_T0069465.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158073369 158094462 - MGP_C3HHeJ_P0069465 Atad3a protein_coding protein_coding MGP_C3HHeJ_T0069466.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158073562 158079079 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0069467.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158078801 158082927 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0069468.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158079935 158082795 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0069469.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158083819 158089452 - MGP_C3HHeJ_P0069469 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069470.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158084121 158088143 - MGP_C3HHeJ_P0069470 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069471.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158085101 158094297 - MGP_C3HHeJ_P0069471 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069472.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158086991 158094437 - MGP_C3HHeJ_P0069472 Atad3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069473.1 MGP_C3HHeJ_G0028927.1 mouse_genomes_project 4 158089213 158094456 - Atad3a protein_coding retained_intron MGP_C3HHeJ_T0014571.1 MGP_C3HHeJ_G0012675.1 mouse_genomes_project 4 120063269 120064226 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064989.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41621686 41629842 - MGP_C3HHeJ_P0064989 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064990.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622948 41629778 - MGP_C3HHeJ_P0064990 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064991.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622948 41629799 - MGP_C3HHeJ_P0064991 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064992.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622948 41629843 - MGP_C3HHeJ_P0064992 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064993.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41622959 41629841 - MGP_C3HHeJ_P0064993 Cd72 protein_coding protein_coding MGP_C3HHeJ_T0064994.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41623254 41625157 - Cd72 protein_coding retained_intron MGP_C3HHeJ_T0064995.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41625059 41627587 - Cd72 protein_coding retained_intron MGP_C3HHeJ_T0064996.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41627524 41629827 - Cd72 protein_coding retained_intron MGP_C3HHeJ_T0064997.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41627535 41629538 - Cd72 protein_coding processed_transcript MGP_C3HHeJ_T0064998.1 MGP_C3HHeJ_G0027904.1 mouse_genomes_project 4 41627815 41629841 - Cd72 protein_coding processed_transcript MGP_C3HHeJ_T0065531.1 MGP_C3HHeJ_G0028034.1 mouse_genomes_project 4 57718431 57790458 - MGP_C3HHeJ_P0065531 AI481877 protein_coding protein_coding MGP_C3HHeJ_T0065532.1 MGP_C3HHeJ_G0028034.1 mouse_genomes_project 4 57757307 57787766 - AI481877 protein_coding retained_intron MGP_C3HHeJ_T0014261.1 MGP_C3HHeJ_G0012365.1 mouse_genomes_project 4 12860895 12861252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014223.1 MGP_C3HHeJ_G0012327.1 mouse_genomes_project 4 367369 367969 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066258.1 MGP_C3HHeJ_G0028207.1 mouse_genomes_project 4 104855593 104893059 - C8a protein_coding processed_transcript MGP_C3HHeJ_T0066259.1 MGP_C3HHeJ_G0028207.1 mouse_genomes_project 4 104855593 104912866 - MGP_C3HHeJ_P0066259 C8a protein_coding protein_coding MGP_C3HHeJ_T0066260.1 MGP_C3HHeJ_G0028207.1 mouse_genomes_project 4 104857423 104912824 - MGP_C3HHeJ_P0066260 C8a protein_coding protein_coding MGP_C3HHeJ_T0014347.1 MGP_C3HHeJ_G0012451.1 mouse_genomes_project 4 36552653 36553589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007783.1 MGP_C3HHeJ_G0006358.1 mouse_genomes_project 4 62569291 62574313 + Gm11482 lincRNA lincRNA MGP_C3HHeJ_T0067984.1 MGP_C3HHeJ_G0028583.1 mouse_genomes_project 4 133708074 133710592 - MGP_C3HHeJ_P0067984 Gpr3 protein_coding protein_coding MGP_C3HHeJ_T0067985.1 MGP_C3HHeJ_G0028583.1 mouse_genomes_project 4 133709101 133711270 - MGP_C3HHeJ_P0067985 Gpr3 protein_coding protein_coding MGP_C3HHeJ_T0067986.1 MGP_C3HHeJ_G0028583.1 mouse_genomes_project 4 133709804 133711048 - MGP_C3HHeJ_P0067986 Gpr3 protein_coding protein_coding MGP_C3HHeJ_T0069503.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187051 158199069 + MGP_C3HHeJ_P0069503 Dvl1 protein_coding protein_coding MGP_C3HHeJ_T0069504.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187110 158198644 + MGP_C3HHeJ_P0069504 Dvl1 protein_coding protein_coding MGP_C3HHeJ_T0069505.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187115 158199068 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069506.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187215 158199069 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069507.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187235 158199069 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069508.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158187320 158199069 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0069509.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158193178 158193720 + Dvl1 protein_coding processed_transcript MGP_C3HHeJ_T0069510.1 MGP_C3HHeJ_G0028935.1 mouse_genomes_project 4 158194339 158195998 + Dvl1 protein_coding retained_intron MGP_C3HHeJ_T0064984.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41617198 41623289 + MGP_C3HHeJ_P0064984 Tesk1 protein_coding protein_coding MGP_C3HHeJ_T0064985.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41618544 41623019 + MGP_C3HHeJ_P0064985 Tesk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064986.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41619798 41620604 + Tesk1 protein_coding retained_intron MGP_C3HHeJ_T0064987.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41619931 41621041 + Tesk1 protein_coding retained_intron MGP_C3HHeJ_T0064988.1 MGP_C3HHeJ_G0027903.1 mouse_genomes_project 4 41620173 41621235 + Tesk1 protein_coding retained_intron MGP_C3HHeJ_T0065781.1 MGP_C3HHeJ_G0028096.1 mouse_genomes_project 4 82250324 82253708 - MGP_C3HHeJ_P0065781 Cer1 protein_coding protein_coding MGP_C3HHeJ_T0068596.1 MGP_C3HHeJ_G0028728.1 mouse_genomes_project 4 141924228 141958248 - MGP_C3HHeJ_P0068596 Padi1 protein_coding protein_coding MGP_C3HHeJ_T0014362.1 MGP_C3HHeJ_G0012466.1 mouse_genomes_project 4 42616016 42616432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010504.1 MGP_C3HHeJ_G0008637.1 mouse_genomes_project 4 42449303 42449376 - Mir5106 miRNA miRNA MGP_C3HHeJ_T0099338.1 MGP_C3HHeJ_G0037532.1 mouse_genomes_project 4 37176580 37176744 - Gm25581 snRNA snRNA MGP_C3HHeJ_T0014411.1 MGP_C3HHeJ_G0012515.1 mouse_genomes_project 4 61860755 61861010 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007929.1 MGP_C3HHeJ_G0006465.1 mouse_genomes_project 4 141520552 141545466 + Gm13026 lincRNA lincRNA MGP_C3HHeJ_T0004362.1 MGP_C3HHeJ_G0003796.1 mouse_genomes_project 4 37307768 37359996 - Gm17094 antisense antisense MGP_C3HHeJ_T0065962.1 MGP_C3HHeJ_G0028139.1 mouse_genomes_project 4 91880143 91883036 - MGP_C3HHeJ_P0065962 Izumo3 protein_coding protein_coding MGP_C3HHeJ_T0065963.1 MGP_C3HHeJ_G0028139.1 mouse_genomes_project 4 91880152 91883049 - MGP_C3HHeJ_P0065963 Izumo3 protein_coding protein_coding MGP_C3HHeJ_T0007817.1 MGP_C3HHeJ_G0006387.1 mouse_genomes_project 4 99490522 99494038 + Gm12690 lincRNA lincRNA MGP_C3HHeJ_T0065688.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69281751 69486833 - MGP_C3HHeJ_P0065688 Cdk5rap2 protein_coding protein_coding MGP_C3HHeJ_T0065689.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69287913 69486808 - MGP_C3HHeJ_P0065689 Cdk5rap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065690.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69303135 69338404 - MGP_C3HHeJ_P0065690 Cdk5rap2 protein_coding protein_coding MGP_C3HHeJ_T0065691.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69307256 69308638 - Cdk5rap2 protein_coding processed_transcript MGP_C3HHeJ_T0065692.1 MGP_C3HHeJ_G0028077.1 mouse_genomes_project 4 69474267 69478923 - Cdk5rap2 protein_coding processed_transcript MGP_C3HHeJ_T0098475.1 MGP_C3HHeJ_G0036680.1 mouse_genomes_project 4 108669379 108672428 + Gm12737 sense_intronic sense_intronic MGP_C3HHeJ_T0068162.1 MGP_C3HHeJ_G0028624.1 mouse_genomes_project 4 135076119 135078414 + Stmn1 protein_coding processed_transcript MGP_C3HHeJ_T0068163.1 MGP_C3HHeJ_G0028624.1 mouse_genomes_project 4 135076126 135080864 + MGP_C3HHeJ_P0068163 Stmn1 protein_coding protein_coding MGP_C3HHeJ_T0068164.1 MGP_C3HHeJ_G0028624.1 mouse_genomes_project 4 135077472 135081370 + MGP_C3HHeJ_P0068164 Stmn1 protein_coding protein_coding MGP_C3HHeJ_T0014276.1 MGP_C3HHeJ_G0012380.1 mouse_genomes_project 4 15826468 15827833 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014488.1 MGP_C3HHeJ_G0012592.1 mouse_genomes_project 4 93358785 93359095 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066049.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97590257 97822023 + MGP_C3HHeJ_P0066049 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066050.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97595931 97944090 + MGP_C3HHeJ_P0066050 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066051.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97595944 97944093 + MGP_C3HHeJ_P0066051 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066052.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97596121 97944090 + MGP_C3HHeJ_P0066052 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066053.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97596137 97944090 + MGP_C3HHeJ_P0066053 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066054.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97596152 97944090 + MGP_C3HHeJ_P0066054 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066055.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97698933 97888383 + MGP_C3HHeJ_P0066055 Nfia protein_coding protein_coding MGP_C3HHeJ_T0066056.1 MGP_C3HHeJ_G0028164.1 mouse_genomes_project 4 97731156 97865019 + Nfia protein_coding processed_transcript MGP_C3HHeJ_T0102008.1 MGP_C3HHeJ_G0039973.1 mouse_genomes_project 4 115451331 115453151 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100608.1 MGP_C3HHeJ_G0038802.1 mouse_genomes_project 4 19483813 19483946 + Gm24607 snoRNA snoRNA MGP_C3HHeJ_T0067901.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132765773 132779314 - MGP_C3HHeJ_P0067901 Rcc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067902.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132765779 132779558 - MGP_C3HHeJ_P0067902 Rcc1 protein_coding protein_coding MGP_C3HHeJ_T0067903.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132771508 132773785 - Rcc1 protein_coding processed_transcript MGP_C3HHeJ_T0067904.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132771675 132790922 - MGP_C3HHeJ_P0067904 Rcc1 protein_coding protein_coding MGP_C3HHeJ_T0067905.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132772567 132779554 - Rcc1 protein_coding retained_intron MGP_C3HHeJ_T0067906.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132772813 132779210 - Rcc1 protein_coding retained_intron MGP_C3HHeJ_T0067907.1 MGP_C3HHeJ_G0028565.1 mouse_genomes_project 4 132773343 132779545 - Rcc1 protein_coding retained_intron MGP_C3HHeJ_T0101994.1 MGP_C3HHeJ_G0039959.1 mouse_genomes_project 4 88270505 88271072 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069312.1 MGP_C3HHeJ_G0028899.1 mouse_genomes_project 4 156628630 156642428 + MGP_C3HHeJ_P0069312 B230104I21Rik protein_coding protein_coding MGP_C3HHeJ_T0014340.1 MGP_C3HHeJ_G0012444.1 mouse_genomes_project 4 33012704 33013272 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099391.1 MGP_C3HHeJ_G0037585.1 mouse_genomes_project 4 127421418 127421521 - Gm22221 snRNA snRNA MGP_C3HHeJ_T0068074.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134567782 134582688 - MGP_C3HHeJ_P0068074 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0068075.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134570324 134576180 - MGP_C3HHeJ_P0068075 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0068076.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134570330 134573231 - MGP_C3HHeJ_P0068076 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0068077.1 MGP_C3HHeJ_G0028604.1 mouse_genomes_project 4 134571952 134582229 - MGP_C3HHeJ_P0068077 Lin28a protein_coding protein_coding MGP_C3HHeJ_T0102010.1 MGP_C3HHeJ_G0039975.1 mouse_genomes_project 4 115936442 115937281 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0065201.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43617519 43661522 + MGP_C3HHeJ_P0065201 Dcaf10 protein_coding protein_coding MGP_C3HHeJ_T0065202.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43617538 43649865 + Dcaf10 protein_coding processed_transcript MGP_C3HHeJ_T0065203.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43617600 43656708 + Dcaf10 protein_coding processed_transcript MGP_C3HHeJ_T0065204.1 MGP_C3HHeJ_G0027943.1 mouse_genomes_project 4 43649731 43657419 + MGP_C3HHeJ_P0065204 Dcaf10 protein_coding protein_coding MGP_C3HHeJ_T0004447.1 MGP_C3HHeJ_G0003861.1 mouse_genomes_project 4 119657407 119658117 - Gm12867 antisense antisense MGP_C3HHeJ_T0014324.1 MGP_C3HHeJ_G0012428.1 mouse_genomes_project 4 29566228 29566665 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014611.1 MGP_C3HHeJ_G0012715.1 mouse_genomes_project 4 133278022 133278307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065850.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548929 85585861 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0065851.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548929 85939454 + MGP_C3HHeJ_P0065851 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065852.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548937 85753426 + MGP_C3HHeJ_P0065852 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065853.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548942 85939457 + MGP_C3HHeJ_P0065853 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065854.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85548989 85695095 + MGP_C3HHeJ_P0065854 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065855.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85549034 85734058 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0065856.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85549072 85937026 + MGP_C3HHeJ_P0065856 Adamtsl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0065857.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85585698 85609234 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0065858.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85694716 85748607 + MGP_C3HHeJ_P0065858 Adamtsl1 protein_coding protein_coding MGP_C3HHeJ_T0065859.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85777220 85777834 + Adamtsl1 protein_coding processed_transcript MGP_C3HHeJ_T0065860.1 MGP_C3HHeJ_G0028105.1 mouse_genomes_project 4 85777497 85939454 + Adamtsl1 protein_coding retained_intron MGP_C3HHeJ_T0067469.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646113 126689011 + MGP_C3HHeJ_P0067469 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067470.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646173 126650316 + MGP_C3HHeJ_P0067470 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067471.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646183 126653854 + Clspn protein_coding processed_transcript MGP_C3HHeJ_T0067472.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126646292 126688640 + MGP_C3HHeJ_P0067472 Clspn protein_coding unknown_likely_coding MGP_C3HHeJ_T0067473.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126650307 126656290 + MGP_C3HHeJ_P0067473 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067474.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126656571 126667763 + MGP_C3HHeJ_P0067474 Clspn protein_coding protein_coding MGP_C3HHeJ_T0067475.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126662429 126665263 + Clspn protein_coding processed_transcript MGP_C3HHeJ_T0067476.1 MGP_C3HHeJ_G0028479.1 mouse_genomes_project 4 126671333 126685544 + Clspn protein_coding processed_transcript MGP_C3HHeJ_T0014365.1 MGP_C3HHeJ_G0012469.1 mouse_genomes_project 4 44075735 44076063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069555.1 MGP_C3HHeJ_G0028945.1 mouse_genomes_project 4 158367562 158370344 + MGP_C3HHeJ_P0069555 Tnfrsf4 protein_coding protein_coding MGP_C3HHeJ_T0069556.1 MGP_C3HHeJ_G0028945.1 mouse_genomes_project 4 158367575 158370331 + Tnfrsf4 protein_coding processed_transcript MGP_C3HHeJ_T0069557.1 MGP_C3HHeJ_G0028945.1 mouse_genomes_project 4 158367968 158368978 + Tnfrsf4 protein_coding processed_transcript MGP_C3HHeJ_T0011473.1 MGP_C3HHeJ_G0009606.1 mouse_genomes_project 4 53250633 53250921 + Gm24628 misc_RNA misc_RNA MGP_C3HHeJ_T0068129.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832257 134833669 + MGP_C3HHeJ_P0068129 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068130.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832358 134834469 + MGP_C3HHeJ_P0068130 E130218I03Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068131.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832358 134834465 + MGP_C3HHeJ_P0068131 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068132.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832371 134833585 + MGP_C3HHeJ_P0068132 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068133.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832371 134833908 + MGP_C3HHeJ_P0068133 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068134.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832372 134834148 + MGP_C3HHeJ_P0068134 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068135.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832373 134834115 + MGP_C3HHeJ_P0068135 E130218I03Rik protein_coding protein_coding MGP_C3HHeJ_T0068136.1 MGP_C3HHeJ_G0028615.1 mouse_genomes_project 4 134832578 134833873 + E130218I03Rik protein_coding processed_transcript MGP_C3HHeJ_T0068582.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141803685 141827167 + MGP_C3HHeJ_P0068582 Rcc2 protein_coding protein_coding MGP_C3HHeJ_T0068583.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141804617 141827167 + MGP_C3HHeJ_P0068583 Rcc2 protein_coding protein_coding MGP_C3HHeJ_T0068584.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141804617 141814500 + MGP_C3HHeJ_P0068584 Rcc2 protein_coding protein_coding MGP_C3HHeJ_T0068585.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141818380 141821251 + Rcc2 protein_coding processed_transcript MGP_C3HHeJ_T0068586.1 MGP_C3HHeJ_G0028724.1 mouse_genomes_project 4 141818407 141821159 + Rcc2 protein_coding processed_transcript MGP_C3HHeJ_T0101999.1 MGP_C3HHeJ_G0039964.1 mouse_genomes_project 4 95951783 95951961 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0068725.1 MGP_C3HHeJ_G0028759.1 mouse_genomes_project 4 143028009 143044732 - MGP_C3HHeJ_P0068725 Efhd2 protein_coding protein_coding MGP_C3HHeJ_T0064444.1 MGP_C3HHeJ_G0027780.1 mouse_genomes_project 4 16594734 16618414 + MGP_C3HHeJ_P0064444 Rmdn1 protein_coding protein_coding MGP_C3HHeJ_T0064445.1 MGP_C3HHeJ_G0027780.1 mouse_genomes_project 4 16594779 16626844 + MGP_C3HHeJ_P0064445 Rmdn1 protein_coding protein_coding MGP_C3HHeJ_T0014543.1 MGP_C3HHeJ_G0012647.1 mouse_genomes_project 4 112000421 112001471 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065949.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91115016 - MGP_C3HHeJ_P0065949 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065950.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91115031 - MGP_C3HHeJ_P0065950 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065951.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91147657 - MGP_C3HHeJ_P0065951 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065952.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90988485 91114996 - MGP_C3HHeJ_P0065952 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065953.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90990802 90992305 - Elavl2 protein_coding retained_intron MGP_C3HHeJ_T0065954.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90990962 91052383 - MGP_C3HHeJ_P0065954 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065955.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90990962 91050616 - MGP_C3HHeJ_P0065955 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065956.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 90996388 91119266 - Elavl2 protein_coding retained_intron MGP_C3HHeJ_T0065957.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91003190 91099619 - MGP_C3HHeJ_P0065957 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065958.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91047645 91115992 - MGP_C3HHeJ_P0065958 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065959.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91047739 91114918 - MGP_C3HHeJ_P0065959 Elavl2 protein_coding protein_coding MGP_C3HHeJ_T0065960.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91123386 91147649 - Elavl2 protein_coding processed_transcript MGP_C3HHeJ_T0065961.1 MGP_C3HHeJ_G0028138.1 mouse_genomes_project 4 91147567 91149124 - Elavl2 protein_coding processed_transcript MGP_C3HHeJ_T0014396.1 MGP_C3HHeJ_G0012500.1 mouse_genomes_project 4 53846011 53846254 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069081.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153052718 153072555 + MGP_C3HHeJ_P0069081 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069083.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153058331 153088869 + MGP_C3HHeJ_P0069083 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069084.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153058366 153088869 + MGP_C3HHeJ_P0069084 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069085.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153063473 153088016 + MGP_C3HHeJ_P0069085 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069086.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153066062 153072546 + MGP_C3HHeJ_P0069086 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069087.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153066143 153068092 + Tnfrsf9 protein_coding processed_transcript MGP_C3HHeJ_T0069088.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153066143 153088869 + MGP_C3HHeJ_P0069088 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069089.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153067819 153087861 + MGP_C3HHeJ_P0069089 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0069090.1 MGP_C3HHeJ_G0028860.1 mouse_genomes_project 4 153067940 153073700 + MGP_C3HHeJ_P0069090 Tnfrsf9 protein_coding protein_coding MGP_C3HHeJ_T0067397.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126108980 126142818 + MGP_C3HHeJ_P0067397 Oscp1 protein_coding protein_coding MGP_C3HHeJ_T0067398.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126109096 126142826 + MGP_C3HHeJ_P0067398 Oscp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067399.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126115373 126139095 + Oscp1 protein_coding processed_transcript MGP_C3HHeJ_T0067400.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126133753 126135252 + Oscp1 protein_coding processed_transcript MGP_C3HHeJ_T0067401.1 MGP_C3HHeJ_G0028465.1 mouse_genomes_project 4 126138332 126139313 + Oscp1 protein_coding processed_transcript MGP_C3HHeJ_T0007934.1 MGP_C3HHeJ_G0006470.1 mouse_genomes_project 4 143045520 143046914 + Gm29367 lincRNA lincRNA MGP_C3HHeJ_T0068358.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137427291 137626384 - MGP_C3HHeJ_P0068358 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068359.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137433356 137626352 - MGP_C3HHeJ_P0068359 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068360.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137434383 137626239 - MGP_C3HHeJ_P0068360 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068361.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137439428 137441557 - Ephb2 protein_coding retained_intron MGP_C3HHeJ_T0068362.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137441367 137477347 - MGP_C3HHeJ_P0068362 Ephb2 protein_coding protein_coding MGP_C3HHeJ_T0068363.1 MGP_C3HHeJ_G0028669.1 mouse_genomes_project 4 137557989 137626370 - Ephb2 protein_coding retained_intron MGP_C3HHeJ_T0004438.1 MGP_C3HHeJ_G0003853.1 mouse_genomes_project 4 117255552 117263804 + Gm12996 antisense antisense MGP_C3HHeJ_T0067265.1 MGP_C3HHeJ_G0028431.1 mouse_genomes_project 4 123019161 123022621 + MGP_C3HHeJ_P0067265 protein_coding protein_coding MGP_C3HHeJ_T0014557.1 MGP_C3HHeJ_G0012661.1 mouse_genomes_project 4 117459769 117460409 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065751.1 MGP_C3HHeJ_G0028092.1 mouse_genomes_project 4 80270392 80315894 + MGP_C3HHeJ_P0065751 Lurap1l protein_coding protein_coding MGP_C3HHeJ_T0069202.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521665 154529942 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069203.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521776 154529946 + MGP_C3HHeJ_P0069203 Rpl22 protein_coding protein_coding MGP_C3HHeJ_T0069204.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521790 154531537 + MGP_C3HHeJ_P0069204 Rpl22 protein_coding protein_coding MGP_C3HHeJ_T0069205.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154521792 154531536 + MGP_C3HHeJ_P0069205 Rpl22 protein_coding protein_coding MGP_C3HHeJ_T0069206.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154522990 154527512 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069207.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154523049 154527741 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069208.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154523391 154529939 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0069209.1 MGP_C3HHeJ_G0028882.1 mouse_genomes_project 4 154523468 154529940 + Rpl22 protein_coding processed_transcript MGP_C3HHeJ_T0100666.1 MGP_C3HHeJ_G0038860.1 mouse_genomes_project 4 123205741 123205872 + Gm25788 snoRNA snoRNA MGP_C3HHeJ_T0098471.1 MGP_C3HHeJ_G0036676.1 mouse_genomes_project 4 81939068 81941860 - Gm11267 sense_intronic sense_intronic MGP_C3HHeJ_T0064325.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956223 7958954 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0064326.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956226 7970021 + MGP_C3HHeJ_P0064326 Ccne2 protein_coding protein_coding MGP_C3HHeJ_T0064327.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956581 7960147 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0064328.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956598 7970125 + MGP_C3HHeJ_P0064328 Ccne2 protein_coding protein_coding MGP_C3HHeJ_T0064329.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956602 7970028 + MGP_C3HHeJ_P0064329 Ccne2 protein_coding protein_coding MGP_C3HHeJ_T0064330.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7956608 7960029 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0064331.1 MGP_C3HHeJ_G0027748.1 mouse_genomes_project 4 7957468 7958228 + Ccne2 protein_coding processed_transcript MGP_C3HHeJ_T0014360.1 MGP_C3HHeJ_G0012464.1 mouse_genomes_project 4 41994810 41996170 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100660.1 MGP_C3HHeJ_G0038854.1 mouse_genomes_project 4 117611640 117611744 - Gm26330 snoRNA snoRNA MGP_C3HHeJ_T0007765.1 MGP_C3HHeJ_G0006343.1 mouse_genomes_project 4 53203054 53233422 + Gm12478 lincRNA lincRNA MGP_C3HHeJ_T0017864.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946969 124948560 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017865.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946979 124949376 + 9930104L06Rik processed_transcript retained_intron MGP_C3HHeJ_T0017866.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946983 124953563 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017867.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946986 124955608 + 9930104L06Rik processed_transcript retained_intron MGP_C3HHeJ_T0017868.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124946995 124955609 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017869.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124948699 124953712 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017870.1 MGP_C3HHeJ_G0015336.1 mouse_genomes_project 4 124954083 124954817 + 9930104L06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0068852.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149969680 149988904 + MGP_C3HHeJ_P0068852 Mthfr protein_coding protein_coding MGP_C3HHeJ_T0068853.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149969762 149977306 + MGP_C3HHeJ_P0068853 Mthfr protein_coding protein_coding MGP_C3HHeJ_T0068854.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149971409 149974866 + Mthfr protein_coding retained_intron MGP_C3HHeJ_T0068855.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149971793 149992249 + MGP_C3HHeJ_P0068855 Mthfr protein_coding protein_coding MGP_C3HHeJ_T0068856.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149971889 149992249 + MGP_C3HHeJ_P0068856 Mthfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068857.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149972204 149975374 + Mthfr protein_coding retained_intron MGP_C3HHeJ_T0068858.1 MGP_C3HHeJ_G0028817.1 mouse_genomes_project 4 149985416 149992246 + MGP_C3HHeJ_P0068858 Mthfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065381.1 MGP_C3HHeJ_G0027991.1 mouse_genomes_project 4 51020753 51021178 - MGP_C3HHeJ_P0065381 Vma21-ps protein_coding protein_coding MGP_C3HHeJ_T0064495.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991842 19060661 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0064496.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991844 19061266 + MGP_C3HHeJ_P0064496 Faxc protein_coding protein_coding MGP_C3HHeJ_T0064497.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991846 19012653 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0064498.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 18991870 19063354 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0064499.1 MGP_C3HHeJ_G0027794.1 mouse_genomes_project 4 19020122 19022474 + Faxc protein_coding processed_transcript MGP_C3HHeJ_T0065486.1 MGP_C3HHeJ_G0028022.1 mouse_genomes_project 4 56615377 56628382 - MGP_C3HHeJ_P0065486 Txn1 protein_coding protein_coding MGP_C3HHeJ_T0010570.1 MGP_C3HHeJ_G0008703.1 mouse_genomes_project 4 158125195 158125321 + Gm27743 miRNA miRNA MGP_C3HHeJ_T0068292.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136703379 136715894 - MGP_C3HHeJ_P0068292 Pithd1 protein_coding protein_coding MGP_C3HHeJ_T0068293.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136703985 136714566 - Pithd1 protein_coding processed_transcript MGP_C3HHeJ_T0068294.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136704313 136707250 - Pithd1 protein_coding retained_intron MGP_C3HHeJ_T0068295.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136704315 136714952 - MGP_C3HHeJ_P0068295 Pithd1 protein_coding protein_coding MGP_C3HHeJ_T0068296.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136705126 136715547 - MGP_C3HHeJ_P0068296 Pithd1 protein_coding protein_coding MGP_C3HHeJ_T0068297.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136706677 136715711 - Pithd1 protein_coding retained_intron MGP_C3HHeJ_T0068298.1 MGP_C3HHeJ_G0028654.1 mouse_genomes_project 4 136715043 136715717 - Pithd1 protein_coding processed_transcript MGP_C3HHeJ_T0065416.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52380407 52421205 + MGP_C3HHeJ_P0065416 Tmem38b protein_coding protein_coding MGP_C3HHeJ_T0065417.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52380417 52387005 + Tmem38b protein_coding processed_transcript MGP_C3HHeJ_T0065418.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52380419 52402659 + Tmem38b protein_coding processed_transcript MGP_C3HHeJ_T0065419.1 MGP_C3HHeJ_G0028004.1 mouse_genomes_project 4 52395284 52413602 + MGP_C3HHeJ_P0065419 Tmem38b protein_coding protein_coding MGP_C3HHeJ_T0066957.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118174970 118182547 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066958.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118174970 118182567 - MGP_C3HHeJ_P0066958 Dmap1 protein_coding protein_coding MGP_C3HHeJ_T0066959.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118174975 118182277 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066960.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118181213 118182515 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066961.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118181595 118182505 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0066962.1 MGP_C3HHeJ_G0028348.1 mouse_genomes_project 4 118181880 118182565 - Dmap1 protein_coding processed_transcript MGP_C3HHeJ_T0098476.1 MGP_C3HHeJ_G0036681.1 mouse_genomes_project 4 131087838 131091630 + Gm12971 sense_intronic sense_intronic MGP_C3HHeJ_T0014401.1 MGP_C3HHeJ_G0012505.1 mouse_genomes_project 4 55004875 55005654 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067568.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128967291 129001180 - MGP_C3HHeJ_P0067568 Zfp362 protein_coding protein_coding MGP_C3HHeJ_T0067569.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128967307 128990021 - MGP_C3HHeJ_P0067569 Zfp362 protein_coding protein_coding MGP_C3HHeJ_T0067570.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128971287 129001180 - MGP_C3HHeJ_P0067570 Zfp362 protein_coding protein_coding MGP_C3HHeJ_T0067571.1 MGP_C3HHeJ_G0028503.1 mouse_genomes_project 4 128983529 128984301 - Zfp362 protein_coding processed_transcript MGP_C3HHeJ_T0067519.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127204473 127256291 + MGP_C3HHeJ_P0067519 Zmym6 protein_coding protein_coding MGP_C3HHeJ_T0067520.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127204487 127256293 + MGP_C3HHeJ_P0067520 Zmym6 protein_coding protein_coding MGP_C3HHeJ_T0067521.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127204532 127239013 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0067522.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127205381 127217632 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0067523.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127214852 127217775 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0067524.1 MGP_C3HHeJ_G0028488.1 mouse_genomes_project 4 127235347 127238891 + Zmym6 protein_coding processed_transcript MGP_C3HHeJ_T0068891.1 MGP_C3HHeJ_G0028825.1 mouse_genomes_project 4 150399737 150410882 - MGP_C3HHeJ_P0068891 Ubiad1 protein_coding protein_coding MGP_C3HHeJ_T0068892.1 MGP_C3HHeJ_G0028825.1 mouse_genomes_project 4 150401732 150410872 - Ubiad1 protein_coding processed_transcript MGP_C3HHeJ_T0010525.1 MGP_C3HHeJ_G0008658.1 mouse_genomes_project 4 108219316 108219409 + Mir6397 miRNA miRNA MGP_C3HHeJ_T0067479.1 MGP_C3HHeJ_G0028481.1 mouse_genomes_project 4 126786220 126818765 + MGP_C3HHeJ_P0067479 Psmb2 protein_coding protein_coding MGP_C3HHeJ_T0067480.1 MGP_C3HHeJ_G0028481.1 mouse_genomes_project 4 126786269 126795869 + Psmb2 protein_coding processed_transcript MGP_C3HHeJ_T0067481.1 MGP_C3HHeJ_G0028481.1 mouse_genomes_project 4 126786294 126816814 + Psmb2 protein_coding processed_transcript MGP_C3HHeJ_T0014500.1 MGP_C3HHeJ_G0012604.1 mouse_genomes_project 4 98991460 98992179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017885.1 MGP_C3HHeJ_G0015343.1 mouse_genomes_project 4 154552983 154554397 - Gm13645 processed_transcript processed_transcript MGP_C3HHeJ_T0067796.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130627728 130673027 - MGP_C3HHeJ_P0067796 Zcchc17 protein_coding protein_coding MGP_C3HHeJ_T0067797.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130628624 130631085 - Zcchc17 protein_coding processed_transcript MGP_C3HHeJ_T0067798.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130629040 130657939 - Zcchc17 protein_coding processed_transcript MGP_C3HHeJ_T0067799.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130648935 130650654 - Zcchc17 protein_coding processed_transcript MGP_C3HHeJ_T0067800.1 MGP_C3HHeJ_G0028546.1 mouse_genomes_project 4 130665247 130673000 - Zcchc17 protein_coding retained_intron MGP_C3HHeJ_T0069545.1 MGP_C3HHeJ_G0028942.1 mouse_genomes_project 4 158311232 158315515 + MGP_C3HHeJ_P0069545 Fam132a protein_coding protein_coding MGP_C3HHeJ_T0069546.1 MGP_C3HHeJ_G0028942.1 mouse_genomes_project 4 158313458 158314080 + Fam132a protein_coding processed_transcript MGP_C3HHeJ_T0069547.1 MGP_C3HHeJ_G0028942.1 mouse_genomes_project 4 158313994 158315507 + Fam132a protein_coding processed_transcript MGP_C3HHeJ_T0100641.1 MGP_C3HHeJ_G0038835.1 mouse_genomes_project 4 72699322 72699455 - Gm24170 snoRNA snoRNA MGP_C3HHeJ_T0004531.1 MGP_C3HHeJ_G0003926.1 mouse_genomes_project 4 154613290 154613753 + Gm16333 antisense antisense MGP_C3HHeJ_T0007772.1 MGP_C3HHeJ_G0006349.1 mouse_genomes_project 4 54828705 54832568 - 2310081O03Rik lincRNA lincRNA MGP_C3HHeJ_T0066181.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102040772 102595168 + MGP_C3HHeJ_P0066181 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066182.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102040954 102159506 + Pde4b protein_coding retained_intron MGP_C3HHeJ_T0066183.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102040970 102546952 + MGP_C3HHeJ_P0066183 Pde4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066184.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102220986 102545279 + MGP_C3HHeJ_P0066184 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066185.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102221246 102596594 + MGP_C3HHeJ_P0066185 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066186.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102221473 102495244 + MGP_C3HHeJ_P0066186 Pde4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066187.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102400229 102594871 + MGP_C3HHeJ_P0066187 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066188.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102408785 102531854 + MGP_C3HHeJ_P0066188 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066189.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102451382 102471273 + Pde4b protein_coding retained_intron MGP_C3HHeJ_T0066190.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102559423 102595182 + MGP_C3HHeJ_P0066190 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066191.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102576896 102595038 + MGP_C3HHeJ_P0066191 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066192.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102579065 102595196 + MGP_C3HHeJ_P0066192 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0066193.1 MGP_C3HHeJ_G0028196.1 mouse_genomes_project 4 102579185 102592784 + MGP_C3HHeJ_P0066193 Pde4b protein_coding protein_coding MGP_C3HHeJ_T0065579.1 MGP_C3HHeJ_G0028048.1 mouse_genomes_project 4 61265577 61299943 + MGP_C3HHeJ_P0065579 Slc31a1 protein_coding protein_coding MGP_C3HHeJ_T0065581.1 MGP_C3HHeJ_G0028048.1 mouse_genomes_project 4 61292129 61299943 + MGP_C3HHeJ_P0065581 Slc31a1 protein_coding protein_coding MGP_C3HHeJ_T0004390.1 MGP_C3HHeJ_G0003821.1 mouse_genomes_project 4 62310030 62323254 + Aknaos antisense antisense MGP_C3HHeJ_T0014580.1 MGP_C3HHeJ_G0012684.1 mouse_genomes_project 4 121972686 121973011 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066759.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451201 116459267 - Uqcrh protein_coding processed_transcript MGP_C3HHeJ_T0066760.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451201 116459304 - MGP_C3HHeJ_P0066760 Uqcrh protein_coding protein_coding MGP_C3HHeJ_T0066761.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451201 116459264 - MGP_C3HHeJ_P0066761 Uqcrh protein_coding protein_coding MGP_C3HHeJ_T0066762.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116451202 116454315 - Uqcrh protein_coding retained_intron MGP_C3HHeJ_T0066763.1 MGP_C3HHeJ_G0028312.1 mouse_genomes_project 4 116454337 116459292 - Uqcrh protein_coding retained_intron MGP_C3HHeJ_T0064865.1 MGP_C3HHeJ_G0027885.1 mouse_genomes_project 4 40682203 40682810 - MGP_C3HHeJ_P0064865 Gm10931 protein_coding protein_coding MGP_C3HHeJ_T0064822.1 MGP_C3HHeJ_G0027874.1 mouse_genomes_project 4 39707572 39708606 - MGP_C3HHeJ_P0064822 protein_coding protein_coding MGP_C3HHeJ_T0068527.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140285572 140302256 - MGP_C3HHeJ_P0068527 Pqlc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068528.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140290108 140302279 - MGP_C3HHeJ_P0068528 Pqlc2 protein_coding protein_coding MGP_C3HHeJ_T0068529.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140290110 140302236 - MGP_C3HHeJ_P0068529 Pqlc2 protein_coding protein_coding MGP_C3HHeJ_T0068530.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140290110 140302249 - MGP_C3HHeJ_P0068530 Pqlc2 protein_coding protein_coding MGP_C3HHeJ_T0068531.1 MGP_C3HHeJ_G0028711.1 mouse_genomes_project 4 140292904 140302208 - MGP_C3HHeJ_P0068531 Pqlc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100655.1 MGP_C3HHeJ_G0038849.1 mouse_genomes_project 4 106177102 106177217 - Gm26047 snoRNA snoRNA MGP_C3HHeJ_T0065313.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515233 46576113 + MGP_C3HHeJ_P0065313 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0065314.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515241 46552215 + MGP_C3HHeJ_P0065314 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0065315.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515244 46576709 + MGP_C3HHeJ_P0065315 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0065316.1 MGP_C3HHeJ_G0027971.1 mouse_genomes_project 4 46515253 46572433 + MGP_C3HHeJ_P0065316 Stx17 protein_coding protein_coding MGP_C3HHeJ_T0068603.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101152 142120465 + MGP_C3HHeJ_P0068603 Atp13a2 protein_coding protein_coding MGP_C3HHeJ_T0068604.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101179 142122708 + Atp13a2 protein_coding retained_intron MGP_C3HHeJ_T0068605.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101269 142112447 + Atp13a2 protein_coding retained_intron MGP_C3HHeJ_T0068606.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142101346 142122714 + MGP_C3HHeJ_P0068606 Atp13a2 protein_coding protein_coding MGP_C3HHeJ_T0068607.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142109881 142117312 + Atp13a2 protein_coding processed_transcript MGP_C3HHeJ_T0068608.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142110491 142116251 + Atp13a2 protein_coding processed_transcript MGP_C3HHeJ_T0068609.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142116088 142117468 + Atp13a2 protein_coding processed_transcript MGP_C3HHeJ_T0068610.1 MGP_C3HHeJ_G0028731.1 mouse_genomes_project 4 142119794 142122101 + Atp13a2 protein_coding retained_intron MGP_C3HHeJ_T0064550.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29388343 29447036 + MGP_C3HHeJ_P0064550 Map3k7 protein_coding protein_coding MGP_C3HHeJ_T0064551.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29388486 29442749 + MGP_C3HHeJ_P0064551 Map3k7 protein_coding protein_coding MGP_C3HHeJ_T0064552.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29401640 29411720 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064553.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29403898 29408661 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064554.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29405969 29415738 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064555.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29408606 29439076 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0064556.1 MGP_C3HHeJ_G0027807.1 mouse_genomes_project 4 29415435 29442628 + Map3k7 protein_coding processed_transcript MGP_C3HHeJ_T0004361.1 MGP_C3HHeJ_G0003795.1 mouse_genomes_project 4 32545731 32550477 + Gm12364 antisense antisense MGP_C3HHeJ_T0014378.1 MGP_C3HHeJ_G0012482.1 mouse_genomes_project 4 50392830 50394069 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017829.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 62928738 63104778 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017830.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 62928827 62998704 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017831.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 62928844 62932239 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017832.1 MGP_C3HHeJ_G0015311.1 mouse_genomes_project 4 63103406 63103799 + 8030451A03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0014555.1 MGP_C3HHeJ_G0012659.1 mouse_genomes_project 4 117315804 117316680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067726.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129897534 129938590 - MGP_C3HHeJ_P0067726 Kpna6 protein_coding protein_coding MGP_C3HHeJ_T0067727.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129907225 129908506 - Kpna6 protein_coding retained_intron MGP_C3HHeJ_T0067728.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129907873 129910315 - Kpna6 protein_coding retained_intron MGP_C3HHeJ_T0067729.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129911035 129938438 - MGP_C3HHeJ_P0067729 Kpna6 protein_coding protein_coding MGP_C3HHeJ_T0067730.1 MGP_C3HHeJ_G0028532.1 mouse_genomes_project 4 129914576 129938677 - Kpna6 protein_coding retained_intron MGP_C3HHeJ_T0014237.1 MGP_C3HHeJ_G0012341.1 mouse_genomes_project 4 5635170 5635568 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014333.1 MGP_C3HHeJ_G0012437.1 mouse_genomes_project 4 31925864 31926827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014545.1 MGP_C3HHeJ_G0012649.1 mouse_genomes_project 4 115504056 115507589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011478.1 MGP_C3HHeJ_G0009611.1 mouse_genomes_project 4 94180006 94180268 - Gm26410 misc_RNA misc_RNA MGP_C3HHeJ_T0067109.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762605 119778502 + MGP_C3HHeJ_P0067109 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067110.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762629 119778505 + MGP_C3HHeJ_P0067110 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067111.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762636 119777897 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067112.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762636 119778502 + MGP_C3HHeJ_P0067112 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067113.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762644 119777899 + MGP_C3HHeJ_P0067113 P3h1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067114.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119762680 119777905 + MGP_C3HHeJ_P0067114 P3h1 protein_coding protein_coding MGP_C3HHeJ_T0067115.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119763490 119766598 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067116.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119765034 119771020 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067117.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119767607 119773674 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067118.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119774552 119777663 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067119.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119776168 119777902 + P3h1 protein_coding processed_transcript MGP_C3HHeJ_T0067120.1 MGP_C3HHeJ_G0028391.1 mouse_genomes_project 4 119776391 119777584 + P3h1 protein_coding retained_intron MGP_C3HHeJ_T0065666.1 MGP_C3HHeJ_G0028068.1 mouse_genomes_project 4 62598773 62599794 - Gm11214 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0065667.1 MGP_C3HHeJ_G0028068.1 mouse_genomes_project 4 62598773 62599325 - MGP_C3HHeJ_P0065667 Gm11214 protein_coding protein_coding MGP_C3HHeJ_T0014243.1 MGP_C3HHeJ_G0012347.1 mouse_genomes_project 4 7695322 7695808 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065937.1 MGP_C3HHeJ_G0028130.1 mouse_genomes_project 4 88487278 88487839 + MGP_C3HHeJ_P0065937 Ifna4 protein_coding protein_coding MGP_C3HHeJ_T0064779.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39494795 39549964 - MGP_C3HHeJ_P0064779 Fam219a protein_coding protein_coding MGP_C3HHeJ_T0064780.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39494795 39549936 - MGP_C3HHeJ_P0064780 Fam219a protein_coding protein_coding MGP_C3HHeJ_T0064781.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39494795 39549964 - MGP_C3HHeJ_P0064781 Fam219a protein_coding protein_coding MGP_C3HHeJ_T0064782.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39497595 39549663 - MGP_C3HHeJ_P0064782 Fam219a protein_coding unknown_likely_coding MGP_C3HHeJ_T0064783.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39497675 39502123 - Fam219a protein_coding processed_transcript MGP_C3HHeJ_T0064784.1 MGP_C3HHeJ_G0027862.1 mouse_genomes_project 4 39501468 39549965 - Fam219a protein_coding processed_transcript MGP_C3HHeJ_T0007721.1 MGP_C3HHeJ_G0006304.1 mouse_genomes_project 4 9143427 9186103 + Gm11846 lincRNA lincRNA MGP_C3HHeJ_T0068379.1 MGP_C3HHeJ_G0028680.1 mouse_genomes_project 4 138333044 138442425 + MGP_C3HHeJ_P0068379 Hspg2 protein_coding protein_coding MGP_C3HHeJ_T0068380.1 MGP_C3HHeJ_G0028680.1 mouse_genomes_project 4 138333078 138442424 + MGP_C3HHeJ_P0068380 Hspg2 protein_coding protein_coding MGP_C3HHeJ_T0068381.1 MGP_C3HHeJ_G0028680.1 mouse_genomes_project 4 138440948 138441902 + Hspg2 protein_coding processed_transcript MGP_C3HHeJ_T0010566.1 MGP_C3HHeJ_G0008699.1 mouse_genomes_project 4 151575837 151575897 + Mir5616 miRNA miRNA MGP_C3HHeJ_T0017835.1 MGP_C3HHeJ_G0015314.1 mouse_genomes_project 4 84980295 85264087 + processed_transcript processed_transcript MGP_C3HHeJ_T0069245.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156234641 156242078 - MGP_C3HHeJ_P0069245 Dffb protein_coding unknown_likely_coding MGP_C3HHeJ_T0069246.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156234649 156245156 - MGP_C3HHeJ_P0069246 Dffb protein_coding protein_coding MGP_C3HHeJ_T0069247.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156239273 156245081 - Dffb protein_coding processed_transcript MGP_C3HHeJ_T0069248.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156242629 156245087 - Dffb protein_coding retained_intron MGP_C3HHeJ_T0069249.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156242777 156245019 - MGP_C3HHeJ_P0069249 Dffb protein_coding unknown_likely_coding MGP_C3HHeJ_T0069250.1 MGP_C3HHeJ_G0028888.1 mouse_genomes_project 4 156244532 156245111 - Dffb protein_coding retained_intron MGP_C3HHeJ_T0064278.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996881 6009849 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064279.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996905 6080232 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064280.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996905 6186247 + MGP_C3HHeJ_P0064280 Clvs1 protein_coding protein_coding MGP_C3HHeJ_T0064281.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996918 6009847 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064282.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5996935 6009009 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064283.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 5999039 6186247 + MGP_C3HHeJ_P0064283 Clvs1 protein_coding protein_coding MGP_C3HHeJ_T0064284.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 6038344 6165837 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0064285.1 MGP_C3HHeJ_G0027741.1 mouse_genomes_project 4 6062181 6165874 + Clvs1 protein_coding processed_transcript MGP_C3HHeJ_T0066844.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127046 117134352 + MGP_C3HHeJ_P0066844 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066845.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127108 117134356 + MGP_C3HHeJ_P0066845 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066846.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127133 117128707 + MGP_C3HHeJ_P0066846 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066847.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127135 117128368 + MGP_C3HHeJ_P0066847 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066848.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127146 117128845 + MGP_C3HHeJ_P0066848 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066849.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127152 117128323 + Ccdc163 protein_coding processed_transcript MGP_C3HHeJ_T0066850.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127161 117129067 + Ccdc163 protein_coding retained_intron MGP_C3HHeJ_T0066851.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127171 117134357 + MGP_C3HHeJ_P0066851 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066852.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127241 117128071 + MGP_C3HHeJ_P0066852 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066853.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127466 117134357 + MGP_C3HHeJ_P0066853 Ccdc163 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066854.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117127467 117134356 + MGP_C3HHeJ_P0066854 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066856.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117131611 117161259 + Ccdc163 protein_coding processed_transcript MGP_C3HHeJ_T0066857.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117131909 117170531 + Ccdc163 protein_coding processed_transcript MGP_C3HHeJ_T0066858.1 MGP_C3HHeJ_G0028329.1 mouse_genomes_project 4 117131976 117134352 + MGP_C3HHeJ_P0066858 Ccdc163 protein_coding protein_coding MGP_C3HHeJ_T0066777.1 MGP_C3HHeJ_G0028316.1 mouse_genomes_project 4 116517511 116529715 - MGP_C3HHeJ_P0066777 Lurap1 protein_coding protein_coding MGP_C3HHeJ_T0066780.1 MGP_C3HHeJ_G0028316.1 mouse_genomes_project 4 116522625 116537051 - Lurap1 protein_coding processed_transcript MGP_C3HHeJ_T0014251.1 MGP_C3HHeJ_G0012355.1 mouse_genomes_project 4 10283397 10283769 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066353.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280400 107306047 + MGP_C3HHeJ_P0066353 Tmem59 protein_coding protein_coding MGP_C3HHeJ_T0066354.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280528 107295718 + MGP_C3HHeJ_P0066354 Tmem59 protein_coding protein_coding MGP_C3HHeJ_T0066355.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280528 107305749 + MGP_C3HHeJ_P0066355 Tmem59 protein_coding protein_coding MGP_C3HHeJ_T0066356.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280668 107295921 + Tmem59 protein_coding retained_intron MGP_C3HHeJ_T0066357.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107280727 107305557 + MGP_C3HHeJ_P0066357 Tmem59 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066358.1 MGP_C3HHeJ_G0028229.1 mouse_genomes_project 4 107281019 107306045 + Tmem59 protein_coding processed_transcript MGP_C3HHeJ_T0007849.1 MGP_C3HHeJ_G0006411.1 mouse_genomes_project 4 117994427 117998583 + Gm12827 lincRNA lincRNA MGP_C3HHeJ_T0100614.1 MGP_C3HHeJ_G0038808.1 mouse_genomes_project 4 37206069 37206195 + Gm23607 snoRNA snoRNA MGP_C3HHeJ_T0065247.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44470758 44517552 - MGP_C3HHeJ_P0065247 Xpa protein_coding protein_coding MGP_C3HHeJ_T0065250.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44494758 44505224 - Xpa protein_coding processed_transcript MGP_C3HHeJ_T0065251.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44494758 44505191 - MGP_C3HHeJ_P0065251 Xpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065252.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44494758 44517552 - MGP_C3HHeJ_P0065252 Xpa protein_coding protein_coding MGP_C3HHeJ_T0065253.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44499879 44517461 - MGP_C3HHeJ_P0065253 Xpa protein_coding unknown_likely_coding MGP_C3HHeJ_T0065254.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44502510 44517545 - MGP_C3HHeJ_P0065254 Xpa protein_coding protein_coding MGP_C3HHeJ_T0065255.1 MGP_C3HHeJ_G0027954.1 mouse_genomes_project 4 44503953 44506118 - Xpa protein_coding processed_transcript MGP_C3HHeJ_T0067483.1 MGP_C3HHeJ_G0028483.1 mouse_genomes_project 4 126854682 126865284 - MGP_C3HHeJ_P0067483 Ncdn protein_coding protein_coding MGP_C3HHeJ_T0067484.1 MGP_C3HHeJ_G0028483.1 mouse_genomes_project 4 126855663 126865313 - Ncdn protein_coding processed_transcript MGP_C3HHeJ_T0067485.1 MGP_C3HHeJ_G0028483.1 mouse_genomes_project 4 126855663 126865302 - MGP_C3HHeJ_P0067485 Ncdn protein_coding protein_coding MGP_C3HHeJ_T0067035.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915395 118921805 + MGP_C3HHeJ_P0067035 Med8 protein_coding protein_coding MGP_C3HHeJ_T0067036.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915408 118921139 + MGP_C3HHeJ_P0067036 Med8 protein_coding protein_coding MGP_C3HHeJ_T0067037.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915413 118921136 + MGP_C3HHeJ_P0067037 Med8 protein_coding protein_coding MGP_C3HHeJ_T0067038.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118915414 118919893 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0067039.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118916406 118917855 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0067040.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118917495 118918576 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0067041.1 MGP_C3HHeJ_G0028362.1 mouse_genomes_project 4 118917686 118920103 + Med8 protein_coding processed_transcript MGP_C3HHeJ_T0017884.1 MGP_C3HHeJ_G0015342.1 mouse_genomes_project 4 141921071 141928757 + Gm13032 processed_transcript processed_transcript MGP_C3HHeJ_T0069254.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156281431 156292354 + MGP_C3HHeJ_P0069254 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0069255.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156281503 156292353 + MGP_C3HHeJ_P0069255 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0069256.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156287118 156289911 + Lrrc47 protein_coding retained_intron MGP_C3HHeJ_T0069257.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156289793 156291732 + MGP_C3HHeJ_P0069257 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0069258.1 MGP_C3HHeJ_G0028890.1 mouse_genomes_project 4 156290479 156291508 + MGP_C3HHeJ_P0069258 Lrrc47 protein_coding protein_coding MGP_C3HHeJ_T0065669.1 MGP_C3HHeJ_G0028070.1 mouse_genomes_project 4 62770618 62800402 - MGP_C3HHeJ_P0065669 Tnfsf8 protein_coding protein_coding MGP_C3HHeJ_T0064662.1 MGP_C3HHeJ_G0027833.1 mouse_genomes_project 4 32523974 32744915 - MGP_C3HHeJ_P0064662 Mob3b protein_coding protein_coding MGP_C3HHeJ_T0064663.1 MGP_C3HHeJ_G0027833.1 mouse_genomes_project 4 32666277 32744915 - Mob3b protein_coding processed_transcript MGP_C3HHeJ_T0067204.1 MGP_C3HHeJ_G0028410.1 mouse_genomes_project 4 121241858 121243107 + MGP_C3HHeJ_P0067204 Cited4 protein_coding protein_coding MGP_C3HHeJ_T0064398.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10602324 10752267 + MGP_C3HHeJ_P0064398 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064399.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10610186 10701988 + Runx1t1 protein_coding processed_transcript MGP_C3HHeJ_T0064400.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10610186 10752246 + MGP_C3HHeJ_P0064400 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064401.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10630857 10748928 + MGP_C3HHeJ_P0064401 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064402.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10644244 10749721 + MGP_C3HHeJ_P0064402 Runx1t1 protein_coding protein_coding MGP_C3HHeJ_T0064403.1 MGP_C3HHeJ_G0027764.1 mouse_genomes_project 4 10747824 10748567 + Runx1t1 protein_coding processed_transcript MGP_C3HHeJ_T0066038.1 MGP_C3HHeJ_G0028161.1 mouse_genomes_project 4 96518163 96585173 - MGP_C3HHeJ_P0066038 Gm12695 protein_coding protein_coding MGP_C3HHeJ_T0065336.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 46990134 47076242 + MGP_C3HHeJ_P0065336 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0065337.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 46990325 47075196 + MGP_C3HHeJ_P0065337 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0065338.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 46990511 47075581 + MGP_C3HHeJ_P0065338 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0065339.1 MGP_C3HHeJ_G0027976.1 mouse_genomes_project 4 47044934 47073350 + MGP_C3HHeJ_P0065339 Tmeff1 protein_coding protein_coding MGP_C3HHeJ_T0067992.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133744388 133756443 + MGP_C3HHeJ_P0067992 Map3k6 protein_coding protein_coding MGP_C3HHeJ_T0067993.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133750750 133751599 + Map3k6 protein_coding processed_transcript MGP_C3HHeJ_T0067994.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133750826 133751627 + Map3k6 protein_coding processed_transcript MGP_C3HHeJ_T0067995.1 MGP_C3HHeJ_G0028585.1 mouse_genomes_project 4 133754361 133756442 + Map3k6 protein_coding processed_transcript MGP_C3HHeJ_T0014624.1 MGP_C3HHeJ_G0012728.1 mouse_genomes_project 4 136614760 136614974 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014393.1 MGP_C3HHeJ_G0012497.1 mouse_genomes_project 4 53679487 53679848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068373.1 MGP_C3HHeJ_G0028676.1 mouse_genomes_project 4 138134613 138175850 - MGP_C3HHeJ_P0068373 Cdc42 protein_coding protein_coding MGP_C3HHeJ_T0068374.1 MGP_C3HHeJ_G0028676.1 mouse_genomes_project 4 138136679 138175829 - MGP_C3HHeJ_P0068374 Cdc42 protein_coding protein_coding MGP_C3HHeJ_T0064463.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773121 18797482 + MGP_C3HHeJ_P0064463 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064464.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773146 18797482 + MGP_C3HHeJ_P0064464 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064465.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773146 18806856 + MGP_C3HHeJ_P0064465 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064466.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773161 18784695 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0064467.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773173 18794898 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0064468.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773175 18794898 + MGP_C3HHeJ_P0064468 Ccnc protein_coding protein_coding MGP_C3HHeJ_T0064469.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773178 18778770 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0064470.1 MGP_C3HHeJ_G0027789.1 mouse_genomes_project 4 18773187 18795490 + Ccnc protein_coding processed_transcript MGP_C3HHeJ_T0066705.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115970910 116005189 - MGP_C3HHeJ_P0066705 Cyp4b1 protein_coding protein_coding MGP_C3HHeJ_T0066706.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115970910 115996694 - MGP_C3HHeJ_P0066706 Cyp4b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066707.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115971813 115999479 - MGP_C3HHeJ_P0066707 Cyp4b1 protein_coding protein_coding MGP_C3HHeJ_T0066708.1 MGP_C3HHeJ_G0028301.1 mouse_genomes_project 4 115978617 115992225 - Cyp4b1 protein_coding retained_intron MGP_C3HHeJ_T0010572.1 MGP_C3HHeJ_G0008705.1 mouse_genomes_project 4 158408836 158408926 - Mir200a miRNA miRNA MGP_C3HHeJ_T0067331.1 MGP_C3HHeJ_G0028447.1 mouse_genomes_project 4 124704777 124712074 + MGP_C3HHeJ_P0067331 Fhl3 protein_coding protein_coding MGP_C3HHeJ_T0067332.1 MGP_C3HHeJ_G0028447.1 mouse_genomes_project 4 124709537 124711892 + MGP_C3HHeJ_P0067332 Fhl3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069092.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153151348 153192334 - MGP_C3HHeJ_P0069092 Per3 protein_coding protein_coding MGP_C3HHeJ_T0069093.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153151482 153163829 - Per3 protein_coding processed_transcript MGP_C3HHeJ_T0069094.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153159137 153179186 - Per3 protein_coding retained_intron MGP_C3HHeJ_T0069095.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153159137 153192334 - MGP_C3HHeJ_P0069095 Per3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069096.1 MGP_C3HHeJ_G0028863.1 mouse_genomes_project 4 153171872 153192334 - Per3 protein_coding retained_intron MGP_C3HHeJ_T0066650.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112237279 + MGP_C3HHeJ_P0066650 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066651.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112241158 + MGP_C3HHeJ_P0066651 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066652.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112237279 + MGP_C3HHeJ_P0066652 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066653.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218094 112231628 + MGP_C3HHeJ_P0066653 Skint1 protein_coding protein_coding MGP_C3HHeJ_T0066654.1 MGP_C3HHeJ_G0028279.1 mouse_genomes_project 4 112218107 112224338 + Skint1 protein_coding retained_intron MGP_C3HHeJ_T0067920.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996730 133018232 + MGP_C3HHeJ_P0067920 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067921.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996730 133008381 + MGP_C3HHeJ_P0067921 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067922.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996747 133018151 + Dnajc8 protein_coding retained_intron MGP_C3HHeJ_T0067923.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996756 133005938 + MGP_C3HHeJ_P0067923 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067924.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996757 133017687 + MGP_C3HHeJ_P0067924 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067925.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996761 133013399 + MGP_C3HHeJ_P0067925 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067926.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996761 133017710 + MGP_C3HHeJ_P0067926 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067927.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996820 133017629 + MGP_C3HHeJ_P0067927 Dnajc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067928.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132996839 133017948 + MGP_C3HHeJ_P0067928 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067929.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 132997208 133006355 + Dnajc8 protein_coding retained_intron MGP_C3HHeJ_T0067930.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 133008393 133017684 + MGP_C3HHeJ_P0067930 Dnajc8 protein_coding protein_coding MGP_C3HHeJ_T0067931.1 MGP_C3HHeJ_G0028570.1 mouse_genomes_project 4 133015807 133017933 + Dnajc8 protein_coding retained_intron MGP_C3HHeJ_T0067264.1 MGP_C3HHeJ_G0028430.1 mouse_genomes_project 4 123019136 123022621 + MGP_C3HHeJ_P0067264 protein_coding protein_coding MGP_C3HHeJ_T0067875.1 MGP_C3HHeJ_G0028559.1 mouse_genomes_project 4 132517629 132553319 - MGP_C3HHeJ_P0067875 Oprd1 protein_coding protein_coding MGP_C3HHeJ_T0100607.1 MGP_C3HHeJ_G0038801.1 mouse_genomes_project 4 18365541 18365626 + Gm25977 snoRNA snoRNA MGP_C3HHeJ_T0066974.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118366720 118368039 - Ccdc24 protein_coding processed_transcript MGP_C3HHeJ_T0066975.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118367813 118370431 - Ccdc24 protein_coding retained_intron MGP_C3HHeJ_T0066977.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118368689 118371651 - MGP_C3HHeJ_P0066977 Ccdc24 protein_coding protein_coding MGP_C3HHeJ_T0066978.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118368689 118371281 - MGP_C3HHeJ_P0066978 Ccdc24 protein_coding protein_coding MGP_C3HHeJ_T0066979.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118368830 118370465 - Ccdc24 protein_coding processed_transcript MGP_C3HHeJ_T0066980.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118369208 118371688 - MGP_C3HHeJ_P0066980 Ccdc24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066981.1 MGP_C3HHeJ_G0028352.1 mouse_genomes_project 4 118369605 118371651 - MGP_C3HHeJ_P0066981 Ccdc24 protein_coding protein_coding MGP_C3HHeJ_T0007756.1 MGP_C3HHeJ_G0006337.1 mouse_genomes_project 4 46381471 46383277 + Gm12434 lincRNA lincRNA MGP_C3HHeJ_T0069173.1 MGP_C3HHeJ_G0028876.1 mouse_genomes_project 4 154346287 154349890 + MGP_C3HHeJ_P0069173 Hes2 protein_coding protein_coding MGP_C3HHeJ_T0069174.1 MGP_C3HHeJ_G0028876.1 mouse_genomes_project 4 154346969 154348021 + Hes2 protein_coding processed_transcript MGP_C3HHeJ_T0099364.1 MGP_C3HHeJ_G0037558.1 mouse_genomes_project 4 95278881 95279048 + Gm25004 snRNA snRNA MGP_C3HHeJ_T0014660.1 MGP_C3HHeJ_G0012764.1 mouse_genomes_project 4 154891916 154892172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064595.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30520483 30557159 + MGP_C3HHeJ_P0064595 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064596.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30520596 30557159 + MGP_C3HHeJ_P0064596 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064597.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30538641 30546841 + MGP_C3HHeJ_P0064597 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064598.1 MGP_C3HHeJ_G0027816.1 mouse_genomes_project 4 30541344 30547097 + MGP_C3HHeJ_P0064598 Gabrr2 protein_coding protein_coding MGP_C3HHeJ_T0064368.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8776744 8785013 - MGP_C3HHeJ_P0064368 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064369.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784542 - MGP_C3HHeJ_P0064369 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064370.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784382 - MGP_C3HHeJ_P0064370 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064371.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784488 - MGP_C3HHeJ_P0064371 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064372.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778367 8784988 - MGP_C3HHeJ_P0064372 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0064373.1 MGP_C3HHeJ_G0027757.1 mouse_genomes_project 4 8778371 8784981 - MGP_C3HHeJ_P0064373 Pdp1 protein_coding protein_coding MGP_C3HHeJ_T0014634.1 MGP_C3HHeJ_G0012738.1 mouse_genomes_project 4 142488534 142488738 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007737.1 MGP_C3HHeJ_G0006319.1 mouse_genomes_project 4 27805378 27896730 + Gm11924 lincRNA lincRNA MGP_C3HHeJ_T0004439.1 MGP_C3HHeJ_G0003854.1 mouse_genomes_project 4 117445906 117446753 - 1700021J08Rik antisense antisense MGP_C3HHeJ_T0010508.1 MGP_C3HHeJ_G0008641.1 mouse_genomes_project 4 46604738 46604835 - Mir1958 miRNA miRNA MGP_C3HHeJ_T0067081.1 MGP_C3HHeJ_G0028383.1 mouse_genomes_project 4 119450132 119451074 - MGP_C3HHeJ_P0067081 protein_coding protein_coding MGP_C3HHeJ_T0066141.1 MGP_C3HHeJ_G0028183.1 mouse_genomes_project 4 100930150 100930549 - MGP_C3HHeJ_P0066141 Gm10577 protein_coding protein_coding MGP_C3HHeJ_T0065744.1 MGP_C3HHeJ_G0028088.1 mouse_genomes_project 4 79327791 79328268 + MGP_C3HHeJ_P0065744 protein_coding protein_coding MGP_C3HHeJ_T0007927.1 MGP_C3HHeJ_G0006463.1 mouse_genomes_project 4 141471205 141476662 + Gm13017 lincRNA lincRNA MGP_C3HHeJ_T0014416.1 MGP_C3HHeJ_G0012520.1 mouse_genomes_project 4 65390904 65391242 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007936.1 MGP_C3HHeJ_G0006472.1 mouse_genomes_project 4 150261317 150270928 + Gm13206 lincRNA lincRNA MGP_C3HHeJ_T0066695.1 MGP_C3HHeJ_G0028297.1 mouse_genomes_project 4 115783535 115793468 - MGP_C3HHeJ_P0066695 Cyp4a14 protein_coding protein_coding MGP_C3HHeJ_T0066696.1 MGP_C3HHeJ_G0028297.1 mouse_genomes_project 4 115791403 115793466 - Cyp4a14 protein_coding processed_transcript MGP_C3HHeJ_T0066668.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115231117 115258498 - MGP_C3HHeJ_P0066668 Cmpk1 protein_coding protein_coding MGP_C3HHeJ_T0066669.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115234720 115258406 - MGP_C3HHeJ_P0066669 Cmpk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066670.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115240651 115258329 - MGP_C3HHeJ_P0066670 Cmpk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066671.1 MGP_C3HHeJ_G0028288.1 mouse_genomes_project 4 115256074 115258406 - Cmpk1 protein_coding processed_transcript MGP_C3HHeJ_T0064332.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7964289 8021313 - MGP_C3HHeJ_P0064332 Ints8 protein_coding protein_coding MGP_C3HHeJ_T0064333.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969311 7979493 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064334.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969581 8002173 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064335.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969583 8021313 - MGP_C3HHeJ_P0064335 Ints8 protein_coding protein_coding MGP_C3HHeJ_T0064336.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969583 8021313 - MGP_C3HHeJ_P0064336 Ints8 protein_coding protein_coding MGP_C3HHeJ_T0064337.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7969584 7980060 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064338.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7974100 7986210 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0064339.1 MGP_C3HHeJ_G0027749.1 mouse_genomes_project 4 7999192 8002626 - Ints8 protein_coding processed_transcript MGP_C3HHeJ_T0017813.1 MGP_C3HHeJ_G0015299.1 mouse_genomes_project 4 22108452 22399595 + processed_transcript processed_transcript MGP_C3HHeJ_T0010523.1 MGP_C3HHeJ_G0008656.1 mouse_genomes_project 4 101266672 101266755 - Mir101a miRNA miRNA MGP_C3HHeJ_T0066793.1 MGP_C3HHeJ_G0028318.1 mouse_genomes_project 4 116559550 116560469 + MGP_C3HHeJ_P0066793 1700042G07Rik protein_coding protein_coding MGP_C3HHeJ_T0100613.1 MGP_C3HHeJ_G0038807.1 mouse_genomes_project 4 34975579 34975700 + Gm22732 snoRNA snoRNA MGP_C3HHeJ_T0007787.1 MGP_C3HHeJ_G0006362.1 mouse_genomes_project 4 67385158 67394463 - Gm12911 lincRNA lincRNA MGP_C3HHeJ_T0064346.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8108907 8164317 - MGP_C3HHeJ_P0064346 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064347.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8108907 8164421 - MGP_C3HHeJ_P0064347 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064348.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8109012 8164421 - MGP_C3HHeJ_P0064348 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064349.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8109979 8144022 - MGP_C3HHeJ_P0064349 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064350.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8109979 8164317 - MGP_C3HHeJ_P0064350 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0064351.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8117552 8121064 - Esrp1 protein_coding processed_transcript MGP_C3HHeJ_T0064352.1 MGP_C3HHeJ_G0027751.1 mouse_genomes_project 4 8134400 8164032 - MGP_C3HHeJ_P0064352 Esrp1 protein_coding protein_coding MGP_C3HHeJ_T0007938.1 MGP_C3HHeJ_G0006474.1 mouse_genomes_project 4 150698044 150700926 + Gm13203 lincRNA lincRNA MGP_C3HHeJ_T0007790.1 MGP_C3HHeJ_G0006365.1 mouse_genomes_project 4 81105972 81110274 + Gm11412 lincRNA lincRNA MGP_C3HHeJ_T0010505.1 MGP_C3HHeJ_G0008638.1 mouse_genomes_project 4 42851137 42851215 - Mir5120 miRNA miRNA MGP_C3HHeJ_T0010550.1 MGP_C3HHeJ_G0008683.1 mouse_genomes_project 4 135179851 135179980 - Mir6403 miRNA miRNA MGP_C3HHeJ_T0007928.1 MGP_C3HHeJ_G0006464.1 mouse_genomes_project 4 141506099 141513387 + Gm13021 lincRNA lincRNA MGP_C3HHeJ_T0068347.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324397 137376836 - MGP_C3HHeJ_P0068347 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068348.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324401 137376800 - MGP_C3HHeJ_P0068348 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068349.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324711 137376421 - MGP_C3HHeJ_P0068349 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068350.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137324740 137326404 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068351.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137325735 137327034 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068352.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137326982 137329174 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068353.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137329056 137335167 - Kdm1a protein_coding retained_intron MGP_C3HHeJ_T0068354.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137329084 137342272 - MGP_C3HHeJ_P0068354 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0068355.1 MGP_C3HHeJ_G0028666.1 mouse_genomes_project 4 137332198 137351063 - MGP_C3HHeJ_P0068355 Kdm1a protein_coding protein_coding MGP_C3HHeJ_T0069424.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157893257 157921684 + MGP_C3HHeJ_P0069424 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069425.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894596 157921688 + MGP_C3HHeJ_P0069425 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069426.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894722 157907780 + Nadk protein_coding processed_transcript MGP_C3HHeJ_T0069427.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894738 157907774 + MGP_C3HHeJ_P0069427 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069428.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894804 157910070 + MGP_C3HHeJ_P0069428 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069429.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157894968 157910024 + MGP_C3HHeJ_P0069429 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069430.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157913181 157921688 + MGP_C3HHeJ_P0069430 Nadk protein_coding protein_coding MGP_C3HHeJ_T0069431.1 MGP_C3HHeJ_G0028918.1 mouse_genomes_project 4 157917463 157920307 + Nadk protein_coding processed_transcript MGP_C3HHeJ_T0007875.1 MGP_C3HHeJ_G0006428.1 mouse_genomes_project 4 128821426 128822403 + Gm12958 lincRNA lincRNA MGP_C3HHeJ_T0064422.1 MGP_C3HHeJ_G0027772.1 mouse_genomes_project 4 12807656 12835926 - MGP_C3HHeJ_P0064422 Decr1 protein_coding protein_coding MGP_C3HHeJ_T0064423.1 MGP_C3HHeJ_G0027772.1 mouse_genomes_project 4 12823395 12835694 - Decr1 protein_coding processed_transcript MGP_C3HHeJ_T0064424.1 MGP_C3HHeJ_G0027772.1 mouse_genomes_project 4 12834109 12834908 - Decr1 protein_coding processed_transcript MGP_C3HHeJ_T0007781.1 MGP_C3HHeJ_G0006356.1 mouse_genomes_project 4 61637038 61641050 - Gm11211 lincRNA lincRNA MGP_C3HHeJ_T0004387.1 MGP_C3HHeJ_G0003818.1 mouse_genomes_project 4 60972218 60974567 + antisense antisense MGP_C3HHeJ_T0065511.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57467208 57587493 - MGP_C3HHeJ_P0065511 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065512.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57478931 57480153 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065513.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57479737 57586686 - MGP_C3HHeJ_P0065513 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065514.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57483608 57487867 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065515.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57487617 57502326 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065516.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57498804 57586683 - MGP_C3HHeJ_P0065516 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065517.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57500963 57503175 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065518.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57504354 57515481 - AI314180 protein_coding processed_transcript MGP_C3HHeJ_T0065519.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57514746 57587448 - MGP_C3HHeJ_P0065519 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065520.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57534645 57587493 - MGP_C3HHeJ_P0065520 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0065521.1 MGP_C3HHeJ_G0028028.1 mouse_genomes_project 4 57543223 57586658 - MGP_C3HHeJ_P0065521 AI314180 protein_coding protein_coding MGP_C3HHeJ_T0067546.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128759166 128765590 - protein_coding processed_transcript MGP_C3HHeJ_T0067547.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128761002 128786882 - MGP_C3HHeJ_P0067547 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067548.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128761231 128784503 - MGP_C3HHeJ_P0067548 protein_coding unknown_likely_coding MGP_C3HHeJ_T0067549.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128778286 128786874 - protein_coding retained_intron MGP_C3HHeJ_T0067550.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128781290 128786835 - MGP_C3HHeJ_P0067550 protein_coding protein_coding MGP_C3HHeJ_T0067551.1 MGP_C3HHeJ_G0028499.1 mouse_genomes_project 4 128781324 128786821 - MGP_C3HHeJ_P0067551 protein_coding protein_coding MGP_C3HHeJ_T0014487.1 MGP_C3HHeJ_G0012591.1 mouse_genomes_project 4 93020523 93021399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064699.1 MGP_C3HHeJ_G0027842.1 mouse_genomes_project 4 38380427 38385351 + MGP_C3HHeJ_P0064699 Tmem215 protein_coding protein_coding MGP_C3HHeJ_T0064700.1 MGP_C3HHeJ_G0027842.1 mouse_genomes_project 4 38381378 38383843 + MGP_C3HHeJ_P0064700 Tmem215 protein_coding protein_coding MGP_C3HHeJ_T0010492.1 MGP_C3HHeJ_G0008625.1 mouse_genomes_project 4 13036092 13036188 - Gm22690 miRNA miRNA MGP_C3HHeJ_T0065305.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846288 45854815 + MGP_C3HHeJ_P0065305 protein_coding protein_coding MGP_C3HHeJ_T0065306.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846394 45854701 + MGP_C3HHeJ_P0065306 protein_coding protein_coding MGP_C3HHeJ_T0065307.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846438 45854667 + MGP_C3HHeJ_P0065307 protein_coding protein_coding MGP_C3HHeJ_T0065308.1 MGP_C3HHeJ_G0027969.1 mouse_genomes_project 4 45846578 45852364 + protein_coding retained_intron MGP_C3HHeJ_T0066662.1 MGP_C3HHeJ_G0028282.1 mouse_genomes_project 4 113592979 113618981 + MGP_C3HHeJ_P0066662 Skint11 protein_coding protein_coding MGP_C3HHeJ_T0066176.1 MGP_C3HHeJ_G0028193.1 mouse_genomes_project 4 101875553 101880456 + MGP_C3HHeJ_P0066176 protein_coding protein_coding MGP_C3HHeJ_T0014271.1 MGP_C3HHeJ_G0012375.1 mouse_genomes_project 4 14221004 14221265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098291.1 MGP_C3HHeJ_G0036503.1 mouse_genomes_project 4 86089920 86090051 - Scarna8 scaRNA scaRNA MGP_C3HHeJ_T0064723.1 MGP_C3HHeJ_G0027848.1 mouse_genomes_project 4 38876316 38889118 - MGP_C3HHeJ_P0064723 Bag1 protein_coding protein_coding MGP_C3HHeJ_T0064724.1 MGP_C3HHeJ_G0027848.1 mouse_genomes_project 4 38876317 38889131 - MGP_C3HHeJ_P0064724 Bag1 protein_coding protein_coding MGP_C3HHeJ_T0064725.1 MGP_C3HHeJ_G0027848.1 mouse_genomes_project 4 38876319 38889080 - MGP_C3HHeJ_P0064725 Bag1 protein_coding protein_coding MGP_C3HHeJ_T0014383.1 MGP_C3HHeJ_G0012487.1 mouse_genomes_project 4 50966713 50966971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007779.1 MGP_C3HHeJ_G0006354.1 mouse_genomes_project 4 58014281 58017389 + Gm12596 lincRNA lincRNA MGP_C3HHeJ_T0007932.1 MGP_C3HHeJ_G0006468.1 mouse_genomes_project 4 142401038 142402276 + Gm13056 lincRNA lincRNA MGP_C3HHeJ_T0004473.1 MGP_C3HHeJ_G0003881.1 mouse_genomes_project 4 132961624 132967716 - Gm12981 antisense antisense MGP_C3HHeJ_T0069436.1 MGP_C3HHeJ_G0028920.1 mouse_genomes_project 4 157946789 157978793 - MGP_C3HHeJ_P0069436 Gm10563 protein_coding protein_coding MGP_C3HHeJ_T0007733.1 MGP_C3HHeJ_G0006315.1 mouse_genomes_project 4 21541175 21541690 - Gm27243 lincRNA lincRNA MGP_C3HHeJ_T0068196.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558908 135562979 + Rsrp1 protein_coding retained_intron MGP_C3HHeJ_T0068197.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558908 135562979 + MGP_C3HHeJ_P0068197 Rsrp1 protein_coding protein_coding MGP_C3HHeJ_T0068198.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558909 135560737 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068199.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558942 135560647 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068200.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135558961 135562680 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068201.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135559776 135562680 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068202.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135560026 135560669 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068203.1 MGP_C3HHeJ_G0028634.1 mouse_genomes_project 4 135560759 135562261 + Rsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0068653.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142427268 142456757 + MGP_C3HHeJ_P0068653 Epha2 protein_coding protein_coding MGP_C3HHeJ_T0068654.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142428435 142434739 + Epha2 protein_coding processed_transcript MGP_C3HHeJ_T0068655.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142434898 142436963 + Epha2 protein_coding processed_transcript MGP_C3HHeJ_T0068656.1 MGP_C3HHeJ_G0028740.1 mouse_genomes_project 4 142444263 142448274 + Epha2 protein_coding processed_transcript MGP_C3HHeJ_T0067945.1 MGP_C3HHeJ_G0028573.1 mouse_genomes_project 4 133195488 133204121 - MGP_C3HHeJ_P0067945 Xkr8 protein_coding protein_coding MGP_C3HHeJ_T0067946.1 MGP_C3HHeJ_G0028573.1 mouse_genomes_project 4 133200077 133204103 - Xkr8 protein_coding processed_transcript MGP_C3HHeJ_T0067947.1 MGP_C3HHeJ_G0028573.1 mouse_genomes_project 4 133202478 133204058 - Xkr8 protein_coding processed_transcript MGP_C3HHeJ_T0017816.1 MGP_C3HHeJ_G0015302.1 mouse_genomes_project 4 32471169 32476722 - Platr9 processed_transcript processed_transcript MGP_C3HHeJ_T0017817.1 MGP_C3HHeJ_G0015302.1 mouse_genomes_project 4 32474835 32476722 - Platr9 processed_transcript processed_transcript MGP_C3HHeJ_T0007923.1 MGP_C3HHeJ_G0006460.1 mouse_genomes_project 4 140979788 140989391 + Gm13028 lincRNA lincRNA MGP_C3HHeJ_T0069521.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158227608 158229453 - Pusl1 protein_coding processed_transcript MGP_C3HHeJ_T0069523.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158228591 158231715 - MGP_C3HHeJ_P0069523 Pusl1 protein_coding protein_coding MGP_C3HHeJ_T0069524.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230319 158231143 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0069525.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230430 158231660 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0069526.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230714 158231689 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0069527.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230775 158231703 - Pusl1 protein_coding processed_transcript MGP_C3HHeJ_T0069528.1 MGP_C3HHeJ_G0028939.1 mouse_genomes_project 4 158230985 158231662 - Pusl1 protein_coding retained_intron MGP_C3HHeJ_T0014638.1 MGP_C3HHeJ_G0012742.1 mouse_genomes_project 4 144493911 144495256 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068122.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134812718 134823094 - MGP_C3HHeJ_P0068122 Cnksr1 protein_coding protein_coding MGP_C3HHeJ_T0068123.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134812726 134823034 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0068124.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134814044 134815119 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0068125.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134815108 134817856 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0068126.1 MGP_C3HHeJ_G0028613.1 mouse_genomes_project 4 134817167 134820644 - Cnksr1 protein_coding processed_transcript MGP_C3HHeJ_T0066879.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117432871 117437267 - MGP_C3HHeJ_P0066879 Urod protein_coding protein_coding MGP_C3HHeJ_T0066880.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117433070 117434519 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066881.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117433138 117434740 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066882.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117433929 117437218 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066883.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117434314 117437211 - MGP_C3HHeJ_P0066883 Urod protein_coding protein_coding MGP_C3HHeJ_T0066884.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435137 117437200 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066885.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435637 117437199 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066886.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435806 117436451 - Urod protein_coding processed_transcript MGP_C3HHeJ_T0066887.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117435961 117437194 - Urod protein_coding retained_intron MGP_C3HHeJ_T0066888.1 MGP_C3HHeJ_G0028335.1 mouse_genomes_project 4 117436133 117437234 - Urod protein_coding retained_intron MGP_C3HHeJ_T0064446.1 MGP_C3HHeJ_G0027781.1 mouse_genomes_project 4 16625361 16670769 + MGP_C3HHeJ_P0064446 Gm12353 protein_coding protein_coding MGP_C3HHeJ_T0067276.1 MGP_C3HHeJ_G0028434.1 mouse_genomes_project 4 123110350 123125118 + MGP_C3HHeJ_P0067276 Nt5c1a protein_coding protein_coding MGP_C3HHeJ_T0066855.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117127554 117229020 + MGP_C3HHeJ_P0066855 Tesk2 protein_coding protein_coding MGP_C3HHeJ_T0066859.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117140219 117231665 + MGP_C3HHeJ_P0066859 Tesk2 protein_coding protein_coding MGP_C3HHeJ_T0066860.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117161082 117229811 + MGP_C3HHeJ_P0066860 Tesk2 protein_coding protein_coding MGP_C3HHeJ_T0066861.1 MGP_C3HHeJ_G0028330.1 mouse_genomes_project 4 117193147 117227971 + Tesk2 protein_coding processed_transcript MGP_C3HHeJ_T0007820.1 MGP_C3HHeJ_G0006390.1 mouse_genomes_project 4 101202861 101203844 + Gm12801 lincRNA lincRNA MGP_C3HHeJ_T0017889.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157714587 157741918 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017890.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157727202 157735327 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017891.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157727203 157741909 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017892.1 MGP_C3HHeJ_G0015347.1 mouse_genomes_project 4 157728411 157735306 - 5830444B04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0065775.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82164660 82226422 - MGP_C3HHeJ_P0065775 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0065776.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82169969 82226310 - MGP_C3HHeJ_P0065776 Zdhhc21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065777.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82172131 82226707 - MGP_C3HHeJ_P0065777 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0065778.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82204687 82216871 - MGP_C3HHeJ_P0065778 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0065779.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82206743 82226303 - Zdhhc21 protein_coding retained_intron MGP_C3HHeJ_T0065780.1 MGP_C3HHeJ_G0028095.1 mouse_genomes_project 4 82213673 82226322 - MGP_C3HHeJ_P0065780 Zdhhc21 protein_coding protein_coding MGP_C3HHeJ_T0067637.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129565843 129586114 + MGP_C3HHeJ_P0067637 Zbtb8os protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067638.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129566155 129576865 + MGP_C3HHeJ_P0067638 Zbtb8os protein_coding protein_coding MGP_C3HHeJ_T0067639.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129566195 129577008 + MGP_C3HHeJ_P0067639 Zbtb8os protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067640.1 MGP_C3HHeJ_G0028516.1 mouse_genomes_project 4 129574082 129576905 + Zbtb8os protein_coding retained_intron MGP_C3HHeJ_T0064353.1 MGP_C3HHeJ_G0027752.1 mouse_genomes_project 4 8283692 8351018 + MGP_C3HHeJ_P0064353 1110037F02Rik protein_coding protein_coding MGP_C3HHeJ_T0064354.1 MGP_C3HHeJ_G0027752.1 mouse_genomes_project 4 8283692 8326488 + MGP_C3HHeJ_P0064354 1110037F02Rik protein_coding protein_coding MGP_C3HHeJ_T0064355.1 MGP_C3HHeJ_G0027752.1 mouse_genomes_project 4 8283777 8351018 + MGP_C3HHeJ_P0064355 1110037F02Rik protein_coding protein_coding MGP_C3HHeJ_T0014514.1 MGP_C3HHeJ_G0012618.1 mouse_genomes_project 4 103110216 103110432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068946.1 MGP_C3HHeJ_G0028835.1 mouse_genomes_project 4 151115937 151136814 + MGP_C3HHeJ_P0068946 Dffa protein_coding protein_coding MGP_C3HHeJ_T0068947.1 MGP_C3HHeJ_G0028835.1 mouse_genomes_project 4 151115937 151133475 + MGP_C3HHeJ_P0068947 Dffa protein_coding protein_coding MGP_C3HHeJ_T0068948.1 MGP_C3HHeJ_G0028835.1 mouse_genomes_project 4 151119551 151120017 + Dffa protein_coding processed_transcript MGP_C3HHeJ_T0014257.1 MGP_C3HHeJ_G0012361.1 mouse_genomes_project 4 12365957 12366382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068744.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144344957 144455250 - MGP_C3HHeJ_P0068744 Prdm2 protein_coding protein_coding MGP_C3HHeJ_T0068745.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144399591 144436391 - MGP_C3HHeJ_P0068745 Prdm2 protein_coding protein_coding MGP_C3HHeJ_T0068746.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144399615 144455254 - MGP_C3HHeJ_P0068746 Prdm2 protein_coding protein_coding MGP_C3HHeJ_T0068747.1 MGP_C3HHeJ_G0028763.1 mouse_genomes_project 4 144420160 144455540 - Prdm2 protein_coding processed_transcript MGP_C3HHeJ_T0066619.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927911 112039255 + MGP_C3HHeJ_P0066619 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066620.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927936 111976487 + MGP_C3HHeJ_P0066620 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066621.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927937 112018743 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066622.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927965 111987991 + MGP_C3HHeJ_P0066622 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066623.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927986 111976547 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066624.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111927990 111988711 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066625.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111928030 111989297 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066626.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111928056 111988761 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066627.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111928132 112039297 + MGP_C3HHeJ_P0066627 Spata6 protein_coding protein_coding MGP_C3HHeJ_T0066628.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111984499 112038307 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066629.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111987261 112039247 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066630.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 111987300 111989972 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066631.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 112017632 112032884 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066632.1 MGP_C3HHeJ_G0028275.1 mouse_genomes_project 4 112032345 112038315 + Spata6 protein_coding processed_transcript MGP_C3HHeJ_T0066261.1 MGP_C3HHeJ_G0028208.1 mouse_genomes_project 4 104893864 104895605 + MGP_C3HHeJ_P0066261 Gm17662 protein_coding protein_coding MGP_C3HHeJ_T0067227.1 MGP_C3HHeJ_G0028417.1 mouse_genomes_project 4 121631977 121648674 + MGP_C3HHeJ_P0067227 Col9a2 protein_coding protein_coding MGP_C3HHeJ_T0067228.1 MGP_C3HHeJ_G0028417.1 mouse_genomes_project 4 121632340 121637720 + Col9a2 protein_coding retained_intron MGP_C3HHeJ_T0067229.1 MGP_C3HHeJ_G0028417.1 mouse_genomes_project 4 121646350 121648171 + Col9a2 protein_coding processed_transcript MGP_C3HHeJ_T0064836.1 MGP_C3HHeJ_G0027877.1 mouse_genomes_project 4 39747650 39749152 - MGP_C3HHeJ_P0064836 Rpp25l protein_coding protein_coding MGP_C3HHeJ_T0066633.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112083569 112110939 - MGP_C3HHeJ_P0066633 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066634.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112083623 112092410 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0066635.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112084467 112106782 - MGP_C3HHeJ_P0066635 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066636.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112085439 112110775 - MGP_C3HHeJ_P0066636 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066637.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112085684 112088833 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0066638.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112098259 112104381 - MGP_C3HHeJ_P0066638 Slc5a9 protein_coding protein_coding MGP_C3HHeJ_T0066639.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112098588 112100088 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0066640.1 MGP_C3HHeJ_G0028276.1 mouse_genomes_project 4 112098627 112099353 - Slc5a9 protein_coding processed_transcript MGP_C3HHeJ_T0064599.1 MGP_C3HHeJ_G0027817.1 mouse_genomes_project 4 30607066 30638955 + MGP_C3HHeJ_P0064599 Gabrr1 protein_coding protein_coding MGP_C3HHeJ_T0014433.1 MGP_C3HHeJ_G0012537.1 mouse_genomes_project 4 72603985 72604848 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004415.1 MGP_C3HHeJ_G0003836.1 mouse_genomes_project 4 100447720 100452275 - Ube2uos antisense antisense MGP_C3HHeJ_T0064268.1 MGP_C3HHeJ_G0027738.1 mouse_genomes_project 4 4824249 4922210 - MGP_C3HHeJ_P0064268 Car8 protein_coding protein_coding MGP_C3HHeJ_T0017826.1 MGP_C3HHeJ_G0015309.1 mouse_genomes_project 4 51752043 51764285 - 4930412L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017827.1 MGP_C3HHeJ_G0015309.1 mouse_genomes_project 4 51761487 51764581 - 4930412L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0014654.1 MGP_C3HHeJ_G0012758.1 mouse_genomes_project 4 151844357 151844498 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014248.1 MGP_C3HHeJ_G0012352.1 mouse_genomes_project 4 8954822 8955097 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068877.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150095888 150105819 - MGP_C3HHeJ_P0068877 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068878.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150095891 150106308 - MGP_C3HHeJ_P0068878 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068879.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150095891 150106319 - MGP_C3HHeJ_P0068879 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068880.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096355 150106101 - MGP_C3HHeJ_P0068880 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068881.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096625 150103300 - MGP_C3HHeJ_P0068881 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068882.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096660 150106099 - MGP_C3HHeJ_P0068882 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068883.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150096660 150105874 - MGP_C3HHeJ_P0068883 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068884.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150098600 150106075 - MGP_C3HHeJ_P0068884 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0068885.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150099250 150106073 - MGP_C3HHeJ_P0068885 Fbxo44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068886.1 MGP_C3HHeJ_G0028822.1 mouse_genomes_project 4 150099270 150106707 - MGP_C3HHeJ_P0068886 Fbxo44 protein_coding protein_coding MGP_C3HHeJ_T0064804.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39699795 - protein_coding processed_transcript MGP_C3HHeJ_T0064805.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39707959 - protein_coding processed_transcript MGP_C3HHeJ_T0064806.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708523 - protein_coding processed_transcript MGP_C3HHeJ_T0064807.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708023 - protein_coding processed_transcript MGP_C3HHeJ_T0064808.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708520 - MGP_C3HHeJ_P0064808 protein_coding protein_coding MGP_C3HHeJ_T0064809.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39708564 - MGP_C3HHeJ_P0064809 protein_coding protein_coding MGP_C3HHeJ_T0064810.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39701074 - MGP_C3HHeJ_P0064810 protein_coding protein_coding MGP_C3HHeJ_T0064811.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39698992 39699750 - MGP_C3HHeJ_P0064811 protein_coding protein_coding MGP_C3HHeJ_T0064814.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39699003 39699738 - MGP_C3HHeJ_P0064814 protein_coding protein_coding MGP_C3HHeJ_T0064819.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39699394 39708592 - protein_coding processed_transcript MGP_C3HHeJ_T0064820.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39699428 39708360 - protein_coding processed_transcript MGP_C3HHeJ_T0064825.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707609 39708669 - protein_coding processed_transcript MGP_C3HHeJ_T0064826.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707609 39708591 - protein_coding processed_transcript MGP_C3HHeJ_T0064827.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707609 39708580 - MGP_C3HHeJ_P0064827 protein_coding protein_coding MGP_C3HHeJ_T0064833.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707836 39708619 - protein_coding processed_transcript MGP_C3HHeJ_T0064834.1 MGP_C3HHeJ_G0027868.1 mouse_genomes_project 4 39707898 39708651 - protein_coding processed_transcript MGP_C3HHeJ_T0066432.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108023974 108044000 - MGP_C3HHeJ_P0066432 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0066433.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108023976 108043950 - MGP_C3HHeJ_P0066433 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0066434.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108027577 108043935 - MGP_C3HHeJ_P0066434 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0066435.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108027664 108033174 - Cpt2 protein_coding retained_intron MGP_C3HHeJ_T0066436.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108027811 108043837 - Cpt2 protein_coding processed_transcript MGP_C3HHeJ_T0066437.1 MGP_C3HHeJ_G0028241.1 mouse_genomes_project 4 108028166 108043978 - MGP_C3HHeJ_P0066437 Cpt2 protein_coding protein_coding MGP_C3HHeJ_T0007740.1 MGP_C3HHeJ_G0006322.1 mouse_genomes_project 4 34603652 34638745 + Gm12371 lincRNA lincRNA MGP_C3HHeJ_T0010530.1 MGP_C3HHeJ_G0008663.1 mouse_genomes_project 4 121351024 121351113 - Mir30c-1 miRNA miRNA MGP_C3HHeJ_T0098127.1 MGP_C3HHeJ_G0036339.1 mouse_genomes_project 4 9669480 9669587 + n-R5s182 rRNA rRNA MGP_C3HHeJ_T0014317.1 MGP_C3HHeJ_G0012421.1 mouse_genomes_project 4 26401358 26401537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001378.1 MGP_C3HHeJ_G0001309.1 mouse_genomes_project 4 46201968 46307031 - TEC TEC MGP_C3HHeJ_T0014610.1 MGP_C3HHeJ_G0012714.1 mouse_genomes_project 4 132668218 132668539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066222.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121078 103122593 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066223.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121119 103137717 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066224.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121153 103149888 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066225.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121450 103124991 + MGP_C3HHeJ_P0066225 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066226.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121520 103172512 + MGP_C3HHeJ_P0066226 Mier1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0066227.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121644 103125355 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066228.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103121960 103133993 + MGP_C3HHeJ_P0066228 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066229.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103122326 103172502 + MGP_C3HHeJ_P0066229 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066230.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103123983 103125279 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0066231.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103125974 103172505 + MGP_C3HHeJ_P0066231 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066232.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103126078 103149268 + Mier1 protein_coding retained_intron MGP_C3HHeJ_T0066233.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103126098 103151141 + Mier1 protein_coding retained_intron MGP_C3HHeJ_T0066234.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103149751 103169498 + MGP_C3HHeJ_P0066234 Mier1 protein_coding protein_coding MGP_C3HHeJ_T0066235.1 MGP_C3HHeJ_G0028201.1 mouse_genomes_project 4 103165275 103169567 + Mier1 protein_coding processed_transcript MGP_C3HHeJ_T0068780.1 MGP_C3HHeJ_G0028784.1 mouse_genomes_project 4 145806173 145809390 + MGP_C3HHeJ_P0068780 protein_coding protein_coding MGP_C3HHeJ_T0067290.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283804 123634768 - MGP_C3HHeJ_P0067290 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067291.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283804 123305404 - MGP_C3HHeJ_P0067291 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067292.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123443015 - MGP_C3HHeJ_P0067292 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067293.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123307840 - MGP_C3HHeJ_P0067293 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067294.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123489559 - MGP_C3HHeJ_P0067294 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067295.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123301016 - MGP_C3HHeJ_P0067295 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067296.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123634768 - MGP_C3HHeJ_P0067296 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067297.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283887 123417539 - MGP_C3HHeJ_P0067297 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067298.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283889 123634768 - MGP_C3HHeJ_P0067298 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067299.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283889 123470274 - MGP_C3HHeJ_P0067299 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067300.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123283891 123634768 - MGP_C3HHeJ_P0067300 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067301.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123319455 123326861 - MGP_C3HHeJ_P0067301 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067302.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123334488 123344728 - Macf1 protein_coding processed_transcript MGP_C3HHeJ_T0067303.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123395294 123470411 - MGP_C3HHeJ_P0067303 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067304.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123395294 123611894 - MGP_C3HHeJ_P0067304 Macf1 protein_coding protein_coding MGP_C3HHeJ_T0067305.1 MGP_C3HHeJ_G0028438.1 mouse_genomes_project 4 123482769 123510123 - Macf1 protein_coding processed_transcript MGP_C3HHeJ_T0067855.1 MGP_C3HHeJ_G0028556.1 mouse_genomes_project 4 132315810 132317180 + MGP_C3HHeJ_P0067855 Tmem200b protein_coding protein_coding MGP_C3HHeJ_T0010551.1 MGP_C3HHeJ_G0008684.1 mouse_genomes_project 4 136108843 136108922 - Mir700 miRNA miRNA MGP_C3HHeJ_T0068508.1 MGP_C3HHeJ_G0028707.1 mouse_genomes_project 4 140039022 140054676 - MGP_C3HHeJ_P0068508 Htr6 protein_coding protein_coding MGP_C3HHeJ_T0068509.1 MGP_C3HHeJ_G0028707.1 mouse_genomes_project 4 140039323 140053895 - MGP_C3HHeJ_P0068509 Htr6 protein_coding protein_coding MGP_C3HHeJ_T0014422.1 MGP_C3HHeJ_G0012526.1 mouse_genomes_project 4 68913532 68914270 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067092.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119704597 119719136 - MGP_C3HHeJ_P0067092 protein_coding protein_coding MGP_C3HHeJ_T0067093.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119704731 119719101 - MGP_C3HHeJ_P0067093 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067094.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119706712 119719101 - protein_coding retained_intron MGP_C3HHeJ_T0067095.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119707720 119719081 - protein_coding processed_transcript MGP_C3HHeJ_T0067096.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119714849 119717872 - MGP_C3HHeJ_P0067096 protein_coding protein_coding MGP_C3HHeJ_T0067097.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119714910 119719076 - MGP_C3HHeJ_P0067097 protein_coding protein_coding MGP_C3HHeJ_T0067098.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119716319 119719121 - MGP_C3HHeJ_P0067098 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067099.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119716452 119719118 - MGP_C3HHeJ_P0067099 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067100.1 MGP_C3HHeJ_G0028387.1 mouse_genomes_project 4 119716460 119719136 - MGP_C3HHeJ_P0067100 protein_coding protein_coding MGP_C3HHeJ_T0004508.1 MGP_C3HHeJ_G0003908.1 mouse_genomes_project 4 143370392 143373933 + Gm13062 antisense antisense MGP_C3HHeJ_T0014388.1 MGP_C3HHeJ_G0012492.1 mouse_genomes_project 4 52225613 52226662 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065966.1 MGP_C3HHeJ_G0028142.1 mouse_genomes_project 4 94247487 94308539 - MGP_C3HHeJ_P0065966 Caap1 protein_coding protein_coding MGP_C3HHeJ_T0065967.1 MGP_C3HHeJ_G0028142.1 mouse_genomes_project 4 94298325 94308509 - Caap1 protein_coding processed_transcript MGP_C3HHeJ_T0064876.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41080678 41101691 + Phf24 protein_coding processed_transcript MGP_C3HHeJ_T0064877.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41080699 41097674 + MGP_C3HHeJ_P0064877 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064878.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41080712 41108543 + MGP_C3HHeJ_P0064878 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064879.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41081269 41108543 + MGP_C3HHeJ_P0064879 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064880.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41081288 41108543 + MGP_C3HHeJ_P0064880 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064881.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41081352 41104148 + MGP_C3HHeJ_P0064881 Phf24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064882.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41086255 41097640 + MGP_C3HHeJ_P0064882 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064883.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41097761 41103304 + MGP_C3HHeJ_P0064883 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0064884.1 MGP_C3HHeJ_G0027891.1 mouse_genomes_project 4 41102044 41103624 + MGP_C3HHeJ_P0064884 Phf24 protein_coding protein_coding MGP_C3HHeJ_T0099377.1 MGP_C3HHeJ_G0037571.1 mouse_genomes_project 4 115103571 115103704 - Gm23230 snRNA snRNA MGP_C3HHeJ_T0011467.1 MGP_C3HHeJ_G0009600.1 mouse_genomes_project 4 44428734 44429001 + Gm23250 misc_RNA misc_RNA MGP_C3HHeJ_T0014637.1 MGP_C3HHeJ_G0012741.1 mouse_genomes_project 4 144406693 144408222 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067358.1 MGP_C3HHeJ_G0028453.1 mouse_genomes_project 4 124865549 124872474 - MGP_C3HHeJ_P0067358 Maneal protein_coding protein_coding MGP_C3HHeJ_T0066833.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117048580 117063644 - MGP_C3HHeJ_P0066833 Akr1a1 protein_coding protein_coding MGP_C3HHeJ_T0066834.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117048581 117063360 - Akr1a1 protein_coding processed_transcript MGP_C3HHeJ_T0066835.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117048581 117050073 - Akr1a1 protein_coding processed_transcript MGP_C3HHeJ_T0066836.1 MGP_C3HHeJ_G0028326.1 mouse_genomes_project 4 117051164 117061438 - MGP_C3HHeJ_P0066836 Akr1a1 protein_coding protein_coding MGP_C3HHeJ_T0014536.1 MGP_C3HHeJ_G0012640.1 mouse_genomes_project 4 109571569 109572728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069274.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156327426 156373482 - MGP_C3HHeJ_P0069274 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069275.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156329685 156373482 - MGP_C3HHeJ_P0069275 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069276.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156330162 156373476 - MGP_C3HHeJ_P0069276 Trp73 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069277.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156330164 156381925 - MGP_C3HHeJ_P0069277 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069278.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156335368 156361632 - MGP_C3HHeJ_P0069278 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0069279.1 MGP_C3HHeJ_G0028893.1 mouse_genomes_project 4 156338616 156392916 - MGP_C3HHeJ_P0069279 Trp73 protein_coding protein_coding MGP_C3HHeJ_T0004456.1 MGP_C3HHeJ_G0003868.1 mouse_genomes_project 4 123875973 123887909 - Gm12905 antisense antisense MGP_C3HHeJ_T0004457.1 MGP_C3HHeJ_G0003868.1 mouse_genomes_project 4 123876141 123876420 - Gm12905 antisense antisense MGP_C3HHeJ_T0065395.1 MGP_C3HHeJ_G0027998.1 mouse_genomes_project 4 51556380 51566886 + MGP_C3HHeJ_P0065395 Nipsnap3b protein_coding protein_coding MGP_C3HHeJ_T0065396.1 MGP_C3HHeJ_G0027998.1 mouse_genomes_project 4 51556450 51566402 + MGP_C3HHeJ_P0065396 Nipsnap3b protein_coding protein_coding MGP_C3HHeJ_T0065397.1 MGP_C3HHeJ_G0027998.1 mouse_genomes_project 4 51565801 51566331 + Nipsnap3b protein_coding processed_transcript MGP_C3HHeJ_T0100609.1 MGP_C3HHeJ_G0038803.1 mouse_genomes_project 4 22647291 22647416 - Gm25975 snoRNA snoRNA MGP_C3HHeJ_T0007728.1 MGP_C3HHeJ_G0006310.1 mouse_genomes_project 4 17059394 17069272 - 4930598A11Rik lincRNA lincRNA MGP_C3HHeJ_T0004458.1 MGP_C3HHeJ_G0003869.1 mouse_genomes_project 4 124521252 124657681 - Gm27247 antisense antisense MGP_C3HHeJ_T0011491.1 MGP_C3HHeJ_G0009624.1 mouse_genomes_project 4 154392298 154392634 - Gm27500 misc_RNA misc_RNA MGP_C3HHeJ_T0014352.1 MGP_C3HHeJ_G0012456.1 mouse_genomes_project 4 37800556 37801511 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068803.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146493843 146721517 - MGP_C3HHeJ_P0068803 Vps13d protein_coding protein_coding MGP_C3HHeJ_T0068804.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146493848 146717173 - MGP_C3HHeJ_P0068804 Vps13d protein_coding protein_coding MGP_C3HHeJ_T0068805.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146493848 146614240 - MGP_C3HHeJ_P0068805 Vps13d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068806.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146495822 146680543 - MGP_C3HHeJ_P0068806 Vps13d protein_coding protein_coding MGP_C3HHeJ_T0068807.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146496152 146505914 - Vps13d protein_coding processed_transcript MGP_C3HHeJ_T0068808.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146501533 146576394 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0068809.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146538913 146573283 - Vps13d protein_coding processed_transcript MGP_C3HHeJ_T0068810.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146575230 146580490 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0068811.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146592255 146594896 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0068812.1 MGP_C3HHeJ_G0028802.1 mouse_genomes_project 4 146702201 146721507 - Vps13d protein_coding retained_intron MGP_C3HHeJ_T0067049.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118947653 118962688 - MGP_C3HHeJ_P0067049 Mpl protein_coding protein_coding MGP_C3HHeJ_T0067050.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118947655 118962670 - MGP_C3HHeJ_P0067050 Mpl protein_coding protein_coding MGP_C3HHeJ_T0067051.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118948510 118962632 - MGP_C3HHeJ_P0067051 Mpl protein_coding protein_coding MGP_C3HHeJ_T0067052.1 MGP_C3HHeJ_G0028365.1 mouse_genomes_project 4 118948667 118962625 - MGP_C3HHeJ_P0067052 Mpl protein_coding protein_coding MGP_C3HHeJ_T0004472.1 MGP_C3HHeJ_G0003880.1 mouse_genomes_project 4 131154838 131156758 - Gm26716 antisense antisense MGP_C3HHeJ_T0069362.1 MGP_C3HHeJ_G0028909.1 mouse_genomes_project 4 157372984 157386539 - Rer1 protein_coding processed_transcript MGP_C3HHeJ_T0069363.1 MGP_C3HHeJ_G0028909.1 mouse_genomes_project 4 157373813 157383308 - MGP_C3HHeJ_P0069363 Rer1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069364.1 MGP_C3HHeJ_G0028909.1 mouse_genomes_project 4 157382852 157386550 - Rer1 protein_coding processed_transcript MGP_C3HHeJ_T0065344.1 MGP_C3HHeJ_G0027979.1 mouse_genomes_project 4 47829417 47916800 - MGP_C3HHeJ_P0065344 protein_coding protein_coding MGP_C3HHeJ_T0065346.1 MGP_C3HHeJ_G0027979.1 mouse_genomes_project 4 47915057 47916800 - protein_coding processed_transcript MGP_C3HHeJ_T0007898.1 MGP_C3HHeJ_G0006444.1 mouse_genomes_project 4 132692513 132695354 + Gm28874 lincRNA lincRNA MGP_C3HHeJ_T0067079.1 MGP_C3HHeJ_G0028381.1 mouse_genomes_project 4 119431760 119432702 - MGP_C3HHeJ_P0067079 Olfr1329 protein_coding protein_coding MGP_C3HHeJ_T0068862.1 MGP_C3HHeJ_G0028819.1 mouse_genomes_project 4 150038528 150072862 - MGP_C3HHeJ_P0068862 Draxin protein_coding protein_coding MGP_C3HHeJ_T0069459.1 MGP_C3HHeJ_G0028925.1 mouse_genomes_project 4 158036472 158066563 + MGP_C3HHeJ_P0069459 Ssu72 protein_coding protein_coding MGP_C3HHeJ_T0069460.1 MGP_C3HHeJ_G0028925.1 mouse_genomes_project 4 158036796 158048911 + Ssu72 protein_coding retained_intron MGP_C3HHeJ_T0069461.1 MGP_C3HHeJ_G0028925.1 mouse_genomes_project 4 158036807 158064880 + MGP_C3HHeJ_P0069461 Ssu72 protein_coding protein_coding MGP_C3HHeJ_T0066481.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108612192 108716675 + MGP_C3HHeJ_P0066481 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066482.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108612192 108632145 + MGP_C3HHeJ_P0066482 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066483.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108612776 108716681 + MGP_C3HHeJ_P0066483 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066484.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108632072 108679961 + MGP_C3HHeJ_P0066484 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0066485.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108682124 108685969 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066486.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108699867 108705888 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066487.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108699966 108700834 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066488.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108700019 108700827 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066489.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108706686 108712677 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066490.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108712693 108716675 + Zcchc11 protein_coding processed_transcript MGP_C3HHeJ_T0066491.1 MGP_C3HHeJ_G0028251.1 mouse_genomes_project 4 108712977 108716314 + MGP_C3HHeJ_P0066491 Zcchc11 protein_coding protein_coding MGP_C3HHeJ_T0014410.1 MGP_C3HHeJ_G0012514.1 mouse_genomes_project 4 61603440 61621231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004516.1 MGP_C3HHeJ_G0003915.1 mouse_genomes_project 4 150959285 150966943 + Gm17029 antisense antisense MGP_C3HHeJ_T0004517.1 MGP_C3HHeJ_G0003915.1 mouse_genomes_project 4 150959314 150984287 + Gm17029 antisense antisense MGP_C3HHeJ_T0004518.1 MGP_C3HHeJ_G0003915.1 mouse_genomes_project 4 150959348 150965979 + Gm17029 antisense antisense MGP_C3HHeJ_T0069284.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156437641 156440823 - MGP_C3HHeJ_P0069284 Tprgl protein_coding protein_coding MGP_C3HHeJ_T0069285.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156438296 156440823 - Tprgl protein_coding processed_transcript MGP_C3HHeJ_T0069286.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156438512 156440789 - MGP_C3HHeJ_P0069286 Tprgl protein_coding protein_coding MGP_C3HHeJ_T0069287.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156438629 156440323 - Tprgl protein_coding processed_transcript MGP_C3HHeJ_T0069288.1 MGP_C3HHeJ_G0028895.1 mouse_genomes_project 4 156439723 156440763 - Tprgl protein_coding processed_transcript MGP_C3HHeJ_T0067778.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130462456 130475432 - MGP_C3HHeJ_P0067778 Tinagl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067779.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463604 130475432 - MGP_C3HHeJ_P0067779 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067780.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463606 130464614 - Tinagl1 protein_coding retained_intron MGP_C3HHeJ_T0067781.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463606 130475422 - MGP_C3HHeJ_P0067781 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067782.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130463721 130475752 - MGP_C3HHeJ_P0067782 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067783.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130464979 130468952 - Tinagl1 protein_coding retained_intron MGP_C3HHeJ_T0067784.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130468580 130475321 - MGP_C3HHeJ_P0067784 Tinagl1 protein_coding protein_coding MGP_C3HHeJ_T0067785.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130472036 130475422 - Tinagl1 protein_coding processed_transcript MGP_C3HHeJ_T0067786.1 MGP_C3HHeJ_G0028541.1 mouse_genomes_project 4 130474339 130475450 - Tinagl1 protein_coding retained_intron MGP_C3HHeJ_T0014473.1 MGP_C3HHeJ_G0012577.1 mouse_genomes_project 4 88850325 88850818 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014531.1 MGP_C3HHeJ_G0012635.1 mouse_genomes_project 4 108462292 108462600 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066359.1 MGP_C3HHeJ_G0028230.1 mouse_genomes_project 4 107314212 107324161 + MGP_C3HHeJ_P0066359 Ldlrad1 protein_coding protein_coding MGP_C3HHeJ_T0069400.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728083 157736537 + protein_coding retained_intron MGP_C3HHeJ_T0069401.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728151 157767083 + protein_coding processed_transcript MGP_C3HHeJ_T0069402.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728151 157742011 + MGP_C3HHeJ_P0069402 protein_coding protein_coding MGP_C3HHeJ_T0069403.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157728151 157791852 + MGP_C3HHeJ_P0069403 protein_coding protein_coding MGP_C3HHeJ_T0069404.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157741963 157772606 + protein_coding retained_intron MGP_C3HHeJ_T0069405.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157742306 157791434 + MGP_C3HHeJ_P0069405 protein_coding protein_coding MGP_C3HHeJ_T0069406.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157751290 157772439 + protein_coding processed_transcript MGP_C3HHeJ_T0069407.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157776632 157791434 + protein_coding retained_intron MGP_C3HHeJ_T0069408.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157786918 157791559 + protein_coding retained_intron MGP_C3HHeJ_T0069409.1 MGP_C3HHeJ_G0028915.1 mouse_genomes_project 4 157786965 157791509 + protein_coding retained_intron MGP_C3HHeJ_T0007919.1 MGP_C3HHeJ_G0006456.1 mouse_genomes_project 4 138205029 138206146 - 2810405F17Rik lincRNA lincRNA MGP_C3HHeJ_T0066976.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118368325 118382292 - MGP_C3HHeJ_P0066976 B4galt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066982.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118372151 118382613 - MGP_C3HHeJ_P0066982 B4galt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066983.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118372261 118382624 - MGP_C3HHeJ_P0066983 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0066984.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118372432 118382249 - MGP_C3HHeJ_P0066984 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0066986.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118376694 118382292 - MGP_C3HHeJ_P0066986 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0066987.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118380155 118382356 - B4galt2 protein_coding processed_transcript MGP_C3HHeJ_T0066988.1 MGP_C3HHeJ_G0028353.1 mouse_genomes_project 4 118380529 118381428 - MGP_C3HHeJ_P0066988 B4galt2 protein_coding protein_coding MGP_C3HHeJ_T0004418.1 MGP_C3HHeJ_G0003839.1 mouse_genomes_project 4 106624181 106627431 - 2700068H02Rik antisense antisense MGP_C3HHeJ_T0014279.1 MGP_C3HHeJ_G0012383.1 mouse_genomes_project 4 16302310 16303162 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098479.1 MGP_C3HHeJ_G0036684.1 mouse_genomes_project 4 154395294 154395604 + sense_intronic sense_intronic MGP_C3HHeJ_T0011726.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139792913 139796234 + MGP_C3HHeJ_P0011726 Pla2g2a polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011727.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139792916 139796237 + MGP_C3HHeJ_P0011727 Pla2g2a polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011728.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139792932 139794925 + Pla2g2a polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011729.1 MGP_C3HHeJ_G0009843.1 mouse_genomes_project 4 139794314 139796237 + Pla2g2a polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0068893.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150414963 150421340 + Mtor protein_coding retained_intron MGP_C3HHeJ_T0068894.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150414963 150528095 + MGP_C3HHeJ_P0068894 Mtor protein_coding protein_coding MGP_C3HHeJ_T0068895.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150414977 150421344 + MGP_C3HHeJ_P0068895 Mtor protein_coding protein_coding MGP_C3HHeJ_T0068897.1 MGP_C3HHeJ_G0028826.1 mouse_genomes_project 4 150513621 150518082 + Mtor protein_coding retained_intron MGP_C3HHeJ_T0014523.1 MGP_C3HHeJ_G0012627.1 mouse_genomes_project 4 106195134 106196802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099337.1 MGP_C3HHeJ_G0037531.1 mouse_genomes_project 4 34398003 34398110 + Gm23314 snRNA snRNA MGP_C3HHeJ_T0014585.1 MGP_C3HHeJ_G0012689.1 mouse_genomes_project 4 123185416 123185989 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067574.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129129435 129162470 - MGP_C3HHeJ_P0067574 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067575.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129131224 129162478 - MGP_C3HHeJ_P0067575 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067576.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129131224 129162489 - MGP_C3HHeJ_P0067576 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067577.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129145852 129162489 - Azin2 protein_coding retained_intron MGP_C3HHeJ_T0067578.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129146294 129161448 - MGP_C3HHeJ_P0067578 Azin2 protein_coding protein_coding MGP_C3HHeJ_T0067579.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129147392 129162492 - Azin2 protein_coding retained_intron MGP_C3HHeJ_T0067580.1 MGP_C3HHeJ_G0028505.1 mouse_genomes_project 4 129160754 129162478 - Azin2 protein_coding retained_intron MGP_C3HHeJ_T0004341.1 MGP_C3HHeJ_G0003781.1 mouse_genomes_project 4 3005413 3012744 - 4930430E12Rik antisense antisense MGP_C3HHeJ_T0004342.1 MGP_C3HHeJ_G0003781.1 mouse_genomes_project 4 3006225 3012744 - 4930430E12Rik antisense antisense MGP_C3HHeJ_T0004498.1 MGP_C3HHeJ_G0003902.1 mouse_genomes_project 4 142773576 142775153 + AI507597 antisense antisense MGP_C3HHeJ_T0004499.1 MGP_C3HHeJ_G0003902.1 mouse_genomes_project 4 142773905 142775153 + AI507597 antisense antisense MGP_C3HHeJ_T0007809.1 MGP_C3HHeJ_G0006380.1 mouse_genomes_project 4 92273422 92294069 + Gm12637 lincRNA lincRNA MGP_C3HHeJ_T0066667.1 MGP_C3HHeJ_G0028287.1 mouse_genomes_project 4 115187736 115188603 - MGP_C3HHeJ_P0066667 Foxe3 protein_coding protein_coding MGP_C3HHeJ_T0014503.1 MGP_C3HHeJ_G0012607.1 mouse_genomes_project 4 99349185 99350184 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067355.1 MGP_C3HHeJ_G0028452.1 mouse_genomes_project 4 124860980 124865553 + MGP_C3HHeJ_P0067355 Yrdc protein_coding protein_coding MGP_C3HHeJ_T0067356.1 MGP_C3HHeJ_G0028452.1 mouse_genomes_project 4 124861127 124865386 + MGP_C3HHeJ_P0067356 Yrdc protein_coding protein_coding MGP_C3HHeJ_T0067357.1 MGP_C3HHeJ_G0028452.1 mouse_genomes_project 4 124862207 124865029 + Yrdc protein_coding retained_intron MGP_C3HHeJ_T0014342.1 MGP_C3HHeJ_G0012446.1 mouse_genomes_project 4 34062638 34063444 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004495.1 MGP_C3HHeJ_G0003900.1 mouse_genomes_project 4 142383610 142388785 - Gm13055 antisense antisense MGP_C3HHeJ_T0066286.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106734493 106751221 - MGP_C3HHeJ_P0066286 Ttc4 protein_coding protein_coding MGP_C3HHeJ_T0066287.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106734497 106750963 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066288.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106734670 106739811 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066289.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106735301 106751143 - MGP_C3HHeJ_P0066289 Ttc4 protein_coding protein_coding MGP_C3HHeJ_T0066290.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106739907 106743971 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066291.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106740410 106743319 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066292.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106742750 106751168 - MGP_C3HHeJ_P0066292 Ttc4 protein_coding protein_coding MGP_C3HHeJ_T0066293.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106744025 106751178 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0066294.1 MGP_C3HHeJ_G0028220.1 mouse_genomes_project 4 106748566 106751166 - Ttc4 protein_coding processed_transcript MGP_C3HHeJ_T0065845.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661329 84865349 + MGP_C3HHeJ_P0065845 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065846.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661644 84855200 + MGP_C3HHeJ_P0065846 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065847.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661672 85109530 + MGP_C3HHeJ_P0065847 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065848.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84661738 84843515 + MGP_C3HHeJ_P0065848 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0065849.1 MGP_C3HHeJ_G0028104.1 mouse_genomes_project 4 84842164 84853428 + MGP_C3HHeJ_P0065849 Sh3gl2 protein_coding protein_coding MGP_C3HHeJ_T0069432.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157933861 157956726 + MGP_C3HHeJ_P0069432 Slc35e2 protein_coding protein_coding MGP_C3HHeJ_T0069433.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157934056 157952272 + MGP_C3HHeJ_P0069433 Slc35e2 protein_coding protein_coding MGP_C3HHeJ_T0069434.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157934388 157951501 + MGP_C3HHeJ_P0069434 Slc35e2 protein_coding protein_coding MGP_C3HHeJ_T0069435.1 MGP_C3HHeJ_G0028919.1 mouse_genomes_project 4 157942649 157951378 + Slc35e2 protein_coding processed_transcript MGP_C3HHeJ_T0014607.1 MGP_C3HHeJ_G0012711.1 mouse_genomes_project 4 132557901 132558592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007872.1 MGP_C3HHeJ_G0006425.1 mouse_genomes_project 4 127678665 127679929 + 1700080G11Rik lincRNA lincRNA MGP_C3HHeJ_T0099348.1 MGP_C3HHeJ_G0037542.1 mouse_genomes_project 4 47726042 47726148 + Gm22685 snRNA snRNA MGP_C3HHeJ_T0100619.1 MGP_C3HHeJ_G0038813.1 mouse_genomes_project 4 41301369 41301499 - Gm23709 snoRNA snoRNA MGP_C3HHeJ_T0064707.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38636361 38638007 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064708.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38636770 38650673 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064709.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637141 38652239 + MGP_C3HHeJ_P0064709 Dnaja1 protein_coding protein_coding MGP_C3HHeJ_T0064710.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637156 38648646 + MGP_C3HHeJ_P0064710 Dnaja1 protein_coding protein_coding MGP_C3HHeJ_T0064711.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637328 38646664 + MGP_C3HHeJ_P0064711 Dnaja1 protein_coding protein_coding MGP_C3HHeJ_T0064712.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38637573 38644595 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064713.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38638260 38652743 + Dnaja1 protein_coding processed_transcript MGP_C3HHeJ_T0064714.1 MGP_C3HHeJ_G0027844.1 mouse_genomes_project 4 38643083 38653776 + MGP_C3HHeJ_P0064714 Dnaja1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0014533.1 MGP_C3HHeJ_G0012637.1 mouse_genomes_project 4 108636982 108637364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004386.1 MGP_C3HHeJ_G0003817.1 mouse_genomes_project 4 58671280 58676217 - Gm12542 antisense antisense MGP_C3HHeJ_T0014485.1 MGP_C3HHeJ_G0012589.1 mouse_genomes_project 4 92725871 92726361 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068055.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521182 134524472 - MGP_C3HHeJ_P0068055 protein_coding protein_coding MGP_C3HHeJ_T0068056.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523718 - protein_coding retained_intron MGP_C3HHeJ_T0068057.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523088 - protein_coding processed_transcript MGP_C3HHeJ_T0068058.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523064 - protein_coding processed_transcript MGP_C3HHeJ_T0068059.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134524472 - protein_coding processed_transcript MGP_C3HHeJ_T0068060.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521348 134523703 - MGP_C3HHeJ_P0068060 protein_coding protein_coding MGP_C3HHeJ_T0068061.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521402 134523700 - protein_coding retained_intron MGP_C3HHeJ_T0068062.1 MGP_C3HHeJ_G0028602.1 mouse_genomes_project 4 134521412 134523670 - protein_coding retained_intron MGP_C3HHeJ_T0010495.1 MGP_C3HHeJ_G0008628.1 mouse_genomes_project 4 22999225 22999335 - Gm26067 miRNA miRNA MGP_C3HHeJ_T0065387.1 MGP_C3HHeJ_G0027995.1 mouse_genomes_project 4 51454083 51462434 - MGP_C3HHeJ_P0065387 Olfr272 protein_coding protein_coding MGP_C3HHeJ_T0065388.1 MGP_C3HHeJ_G0027995.1 mouse_genomes_project 4 51454083 51455045 - MGP_C3HHeJ_P0065388 Olfr272 protein_coding protein_coding MGP_C3HHeJ_T0064500.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447653 19463966 + Fbxl4 protein_coding processed_transcript MGP_C3HHeJ_T0064501.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447653 19518068 + MGP_C3HHeJ_P0064501 Fbxl4 protein_coding protein_coding MGP_C3HHeJ_T0064502.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447670 19518041 + MGP_C3HHeJ_P0064502 Fbxl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064503.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447681 19518065 + MGP_C3HHeJ_P0064503 Fbxl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064504.1 MGP_C3HHeJ_G0027795.1 mouse_genomes_project 4 19447726 19518052 + MGP_C3HHeJ_P0064504 Fbxl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011481.1 MGP_C3HHeJ_G0009614.1 mouse_genomes_project 4 106023909 106024220 - Gm24363 misc_RNA misc_RNA MGP_C3HHeJ_T0014493.1 MGP_C3HHeJ_G0012597.1 mouse_genomes_project 4 95839385 95839663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068335.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137187795 137213588 + MGP_C3HHeJ_P0068335 Htr1d protein_coding protein_coding MGP_C3HHeJ_T0068336.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137187797 137212949 + MGP_C3HHeJ_P0068336 Htr1d protein_coding protein_coding MGP_C3HHeJ_T0068337.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137187801 137212949 + MGP_C3HHeJ_P0068337 Htr1d protein_coding protein_coding MGP_C3HHeJ_T0068338.1 MGP_C3HHeJ_G0028663.1 mouse_genomes_project 4 137188855 137211165 + Htr1d protein_coding processed_transcript MGP_C3HHeJ_T0004533.1 MGP_C3HHeJ_G0003928.1 mouse_genomes_project 4 156369787 156374660 + Trp73os antisense antisense MGP_C3HHeJ_T0004381.1 MGP_C3HHeJ_G0003812.1 mouse_genomes_project 4 45549676 45561846 - Gm12426 antisense antisense MGP_C3HHeJ_T0065600.1 MGP_C3HHeJ_G0028054.1 mouse_genomes_project 4 61403919 61407188 - MGP_C3HHeJ_P0065600 Hdhd3 protein_coding protein_coding MGP_C3HHeJ_T0065601.1 MGP_C3HHeJ_G0028054.1 mouse_genomes_project 4 61404854 61408379 - Hdhd3 protein_coding processed_transcript MGP_C3HHeJ_T0065091.1 MGP_C3HHeJ_G0027922.1 mouse_genomes_project 4 41921719 41923171 + MGP_C3HHeJ_P0065091 Hrct1 protein_coding protein_coding MGP_C3HHeJ_T0007916.1 MGP_C3HHeJ_G0006453.1 mouse_genomes_project 4 137927090 137927960 - 1700037C06Rik lincRNA lincRNA MGP_C3HHeJ_T0064844.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39776811 39779675 - MGP_C3HHeJ_P0064844 Sigmar1 protein_coding protein_coding MGP_C3HHeJ_T0064845.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39776811 39779675 - MGP_C3HHeJ_P0064845 Sigmar1 protein_coding protein_coding MGP_C3HHeJ_T0064846.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39777416 39783383 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0064847.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39777821 39793647 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0064848.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39778764 39779502 - Sigmar1 protein_coding retained_intron MGP_C3HHeJ_T0064849.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39778896 39779364 - Sigmar1 protein_coding retained_intron MGP_C3HHeJ_T0064850.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39778918 39779636 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0064851.1 MGP_C3HHeJ_G0027880.1 mouse_genomes_project 4 39793075 39794405 - Sigmar1 protein_coding processed_transcript MGP_C3HHeJ_T0101996.1 MGP_C3HHeJ_G0039961.1 mouse_genomes_project 4 88325122 88325667 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099409.1 MGP_C3HHeJ_G0037603.1 mouse_genomes_project 4 150526117 150526225 + Gm23318 snRNA snRNA MGP_C3HHeJ_T0099345.1 MGP_C3HHeJ_G0037539.1 mouse_genomes_project 4 41364691 41364756 - Gm25010 snRNA snRNA MGP_C3HHeJ_T0064472.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18813803 18830019 + Usp45 protein_coding processed_transcript MGP_C3HHeJ_T0064473.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823802 18832367 + Usp45 protein_coding retained_intron MGP_C3HHeJ_T0064474.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823813 18889710 + MGP_C3HHeJ_P0064474 Usp45 protein_coding protein_coding MGP_C3HHeJ_T0064475.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823813 18889712 + MGP_C3HHeJ_P0064475 Usp45 protein_coding protein_coding MGP_C3HHeJ_T0064476.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823822 18847107 + MGP_C3HHeJ_P0064476 Usp45 protein_coding protein_coding MGP_C3HHeJ_T0064477.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18823839 18889712 + MGP_C3HHeJ_P0064477 Usp45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064478.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18829279 18889710 + MGP_C3HHeJ_P0064478 Usp45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064479.1 MGP_C3HHeJ_G0027791.1 mouse_genomes_project 4 18832250 18866724 + MGP_C3HHeJ_P0064479 Usp45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067200.1 MGP_C3HHeJ_G0028408.1 mouse_genomes_project 4 121102943 121133722 - MGP_C3HHeJ_P0067200 Ctps protein_coding protein_coding MGP_C3HHeJ_T0067201.1 MGP_C3HHeJ_G0028408.1 mouse_genomes_project 4 121104986 121108143 - Ctps protein_coding processed_transcript MGP_C3HHeJ_T0067202.1 MGP_C3HHeJ_G0028408.1 mouse_genomes_project 4 121105044 121111722 - Ctps protein_coding processed_transcript MGP_C3HHeJ_T0065289.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45561547 45676430 + MGP_C3HHeJ_P0065289 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065290.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45561547 45676434 + MGP_C3HHeJ_P0065290 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065291.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45586754 45598752 + Col15a1 protein_coding processed_transcript MGP_C3HHeJ_T0065292.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45611769 45615209 + Col15a1 protein_coding processed_transcript MGP_C3HHeJ_T0065293.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45612090 45615398 + Col15a1 protein_coding processed_transcript MGP_C3HHeJ_T0065294.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45640981 45646147 + MGP_C3HHeJ_P0065294 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065295.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45640993 45676434 + MGP_C3HHeJ_P0065295 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065296.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45641211 45652153 + MGP_C3HHeJ_P0065296 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0065297.1 MGP_C3HHeJ_G0027966.1 mouse_genomes_project 4 45661934 45676429 + MGP_C3HHeJ_P0065297 Col15a1 protein_coding protein_coding MGP_C3HHeJ_T0067746.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130276493 130314843 + MGP_C3HHeJ_P0067746 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067747.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130276778 130314843 + MGP_C3HHeJ_P0067747 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067748.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130276882 130314843 + MGP_C3HHeJ_P0067748 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067749.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283663 130314843 + MGP_C3HHeJ_P0067749 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067750.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283664 130314549 + MGP_C3HHeJ_P0067750 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067751.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283664 130314549 + MGP_C3HHeJ_P0067751 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067752.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130283664 130314549 + MGP_C3HHeJ_P0067752 Adgrb2 protein_coding protein_coding MGP_C3HHeJ_T0067753.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130302073 130304065 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067754.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130302266 130304745 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067755.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130304399 130304776 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067756.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130305838 130306784 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067757.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130310987 130313774 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067758.1 MGP_C3HHeJ_G0028537.1 mouse_genomes_project 4 130313325 130314641 + Adgrb2 protein_coding retained_intron MGP_C3HHeJ_T0067531.1 MGP_C3HHeJ_G0028491.1 mouse_genomes_project 4 127379621 127383639 + MGP_C3HHeJ_P0067531 Smim12 protein_coding protein_coding MGP_C3HHeJ_T0007804.1 MGP_C3HHeJ_G0006376.1 mouse_genomes_project 4 88923390 88969179 - lincRNA lincRNA MGP_C3HHeJ_T0007805.1 MGP_C3HHeJ_G0006376.1 mouse_genomes_project 4 88923408 88972744 - lincRNA lincRNA MGP_C3HHeJ_T0014586.1 MGP_C3HHeJ_G0012690.1 mouse_genomes_project 4 123373856 123374174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011469.1 MGP_C3HHeJ_G0009602.1 mouse_genomes_project 4 45971857 45971977 + Gm27668 misc_RNA misc_RNA MGP_C3HHeJ_T0014290.1 MGP_C3HHeJ_G0012394.1 mouse_genomes_project 4 19918795 19921510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007739.1 MGP_C3HHeJ_G0006321.1 mouse_genomes_project 4 31679708 31683737 + Gm12753 lincRNA lincRNA MGP_C3HHeJ_T0069490.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158167826 158169287 + MGP_C3HHeJ_P0069490 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0069491.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158167905 158169679 + MGP_C3HHeJ_P0069491 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0069492.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168167 158169013 + Aurkaip1 protein_coding retained_intron MGP_C3HHeJ_T0069493.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168207 158169610 + MGP_C3HHeJ_P0069493 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0069494.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168213 158169077 + Aurkaip1 protein_coding processed_transcript MGP_C3HHeJ_T0069495.1 MGP_C3HHeJ_G0028933.1 mouse_genomes_project 4 158168217 158169580 + MGP_C3HHeJ_P0069495 Aurkaip1 protein_coding protein_coding MGP_C3HHeJ_T0066837.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101330 117103635 + Prdx1 protein_coding retained_intron MGP_C3HHeJ_T0066838.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101330 117109573 + MGP_C3HHeJ_P0066838 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0066839.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101332 117114987 + MGP_C3HHeJ_P0066839 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0066840.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117101592 117108723 + MGP_C3HHeJ_P0066840 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0066841.1 MGP_C3HHeJ_G0028327.1 mouse_genomes_project 4 117103050 117114917 + MGP_C3HHeJ_P0066841 Prdx1 protein_coding protein_coding MGP_C3HHeJ_T0004494.1 MGP_C3HHeJ_G0003899.1 mouse_genomes_project 4 142233455 142235883 + 4921514A10Rik antisense antisense MGP_C3HHeJ_T0004466.1 MGP_C3HHeJ_G0003876.1 mouse_genomes_project 4 129135206 129140387 + Gm15904 antisense antisense MGP_C3HHeJ_T0064740.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39065635 39076411 - MGP_C3HHeJ_P0064740 Nol6 protein_coding protein_coding MGP_C3HHeJ_T0064741.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39072539 39074508 - Nol6 protein_coding processed_transcript MGP_C3HHeJ_T0064742.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39072755 39074743 - Nol6 protein_coding processed_transcript MGP_C3HHeJ_T0064743.1 MGP_C3HHeJ_G0027853.1 mouse_genomes_project 4 39073087 39073963 - Nol6 protein_coding processed_transcript MGP_C3HHeJ_T0014576.1 MGP_C3HHeJ_G0012680.1 mouse_genomes_project 4 121722230 121724380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065494.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958773 57050212 + MGP_C3HHeJ_P0065494 Musk protein_coding protein_coding MGP_C3HHeJ_T0065495.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050212 + MGP_C3HHeJ_P0065495 Musk protein_coding protein_coding MGP_C3HHeJ_T0065496.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050213 + MGP_C3HHeJ_P0065496 Musk protein_coding protein_coding MGP_C3HHeJ_T0065497.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050212 + MGP_C3HHeJ_P0065497 Musk protein_coding protein_coding MGP_C3HHeJ_T0065498.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050212 + MGP_C3HHeJ_P0065498 Musk protein_coding protein_coding MGP_C3HHeJ_T0065499.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050213 + MGP_C3HHeJ_P0065499 Musk protein_coding protein_coding MGP_C3HHeJ_T0065500.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958775 57050213 + MGP_C3HHeJ_P0065500 Musk protein_coding protein_coding MGP_C3HHeJ_T0065501.1 MGP_C3HHeJ_G0028025.1 mouse_genomes_project 4 56958986 56977974 + Musk protein_coding processed_transcript MGP_C3HHeJ_T0068815.1 MGP_C3HHeJ_G0028804.1 mouse_genomes_project 4 146796012 146843757 - MGP_C3HHeJ_P0068815 Tnfrsf8 protein_coding protein_coding MGP_C3HHeJ_T0068816.1 MGP_C3HHeJ_G0028804.1 mouse_genomes_project 4 146796014 146843774 - MGP_C3HHeJ_P0068816 Tnfrsf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064584.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30243062 30306602 - MGP_C3HHeJ_P0064584 Ankrd6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064585.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30243069 30398430 - MGP_C3HHeJ_P0064585 Ankrd6 protein_coding protein_coding MGP_C3HHeJ_T0064586.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30244774 30302857 - MGP_C3HHeJ_P0064586 Ankrd6 protein_coding protein_coding MGP_C3HHeJ_T0064587.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30262019 30263600 - Ankrd6 protein_coding processed_transcript MGP_C3HHeJ_T0064588.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30265262 30366360 - Ankrd6 protein_coding processed_transcript MGP_C3HHeJ_T0064589.1 MGP_C3HHeJ_G0027813.1 mouse_genomes_project 4 30267947 30303098 - Ankrd6 protein_coding processed_transcript MGP_C3HHeJ_T0017888.1 MGP_C3HHeJ_G0015346.1 mouse_genomes_project 4 157258028 157258937 - Gm20421 processed_transcript processed_transcript MGP_C3HHeJ_T0007777.1 MGP_C3HHeJ_G0006352.1 mouse_genomes_project 4 56849554 56879728 + Gm26889 lincRNA lincRNA MGP_C3HHeJ_T0102018.1 MGP_C3HHeJ_G0039983.1 mouse_genomes_project 4 122532716 122561803 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0065109.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42245070 42297853 - MGP_C3HHeJ_P0065109 Gne protein_coding protein_coding MGP_C3HHeJ_T0065110.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247805 42268147 - MGP_C3HHeJ_P0065110 Gne protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065111.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247821 42286036 - MGP_C3HHeJ_P0065111 Gne protein_coding protein_coding MGP_C3HHeJ_T0065112.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247825 42279484 - MGP_C3HHeJ_P0065112 Gne protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065113.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42247953 42279524 - MGP_C3HHeJ_P0065113 Gne protein_coding protein_coding MGP_C3HHeJ_T0065114.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42256985 42285882 - MGP_C3HHeJ_P0065114 Gne protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065115.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42265724 42279625 - MGP_C3HHeJ_P0065115 Gne protein_coding protein_coding MGP_C3HHeJ_T0065116.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42268154 42276023 - Gne protein_coding retained_intron MGP_C3HHeJ_T0065117.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272549 42297843 - Gne protein_coding retained_intron MGP_C3HHeJ_T0065118.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272717 42297599 - MGP_C3HHeJ_P0065118 Gne protein_coding protein_coding MGP_C3HHeJ_T0065119.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272821 42285994 - Gne protein_coding processed_transcript MGP_C3HHeJ_T0065120.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272840 42285860 - MGP_C3HHeJ_P0065120 Gne protein_coding protein_coding MGP_C3HHeJ_T0065121.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272952 42286275 - MGP_C3HHeJ_P0065121 Gne protein_coding protein_coding MGP_C3HHeJ_T0065122.1 MGP_C3HHeJ_G0027931.1 mouse_genomes_project 4 42272961 42286276 - MGP_C3HHeJ_P0065122 Gne protein_coding protein_coding MGP_C3HHeJ_T0007754.1 MGP_C3HHeJ_G0006335.1 mouse_genomes_project 4 44011230 44012484 + Gm12410 lincRNA lincRNA MGP_C3HHeJ_T0004489.1 MGP_C3HHeJ_G0003894.1 mouse_genomes_project 4 139313587 139317690 + AB041806 antisense antisense MGP_C3HHeJ_T0102027.1 MGP_C3HHeJ_G0039992.1 mouse_genomes_project 4 145440549 145443958 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069595.1 MGP_C3HHeJ_G0028956.1 mouse_genomes_project 4 158622600 158632726 - MGP_C3HHeJ_P0069595 Samd11 protein_coding protein_coding MGP_C3HHeJ_T0069596.1 MGP_C3HHeJ_G0028956.1 mouse_genomes_project 4 158624610 158631925 - MGP_C3HHeJ_P0069596 Samd11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0064719.1 MGP_C3HHeJ_G0027846.1 mouse_genomes_project 4 38736238 38787991 - MGP_C3HHeJ_P0064719 B4galt1 protein_coding protein_coding MGP_C3HHeJ_T0064720.1 MGP_C3HHeJ_G0027846.1 mouse_genomes_project 4 38740779 38787991 - MGP_C3HHeJ_P0064720 B4galt1 protein_coding protein_coding MGP_C3HHeJ_T0011466.1 MGP_C3HHeJ_G0009599.1 mouse_genomes_project 4 42108320 42108397 + Gm27265 misc_RNA misc_RNA MGP_C3HHeJ_T0065317.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46584942 46670119 - MGP_C3HHeJ_P0065317 Erp44 protein_coding protein_coding MGP_C3HHeJ_T0065318.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46586109 46588644 - Erp44 protein_coding processed_transcript MGP_C3HHeJ_T0065319.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46631607 46637827 - Erp44 protein_coding processed_transcript MGP_C3HHeJ_T0065320.1 MGP_C3HHeJ_G0027972.1 mouse_genomes_project 4 46634250 46670013 - Erp44 protein_coding processed_transcript MGP_C3HHeJ_T0004490.1 MGP_C3HHeJ_G0003895.1 mouse_genomes_project 4 140164711 140169913 - Gm16287 antisense antisense MGP_C3HHeJ_T0011483.1 MGP_C3HHeJ_G0009616.1 mouse_genomes_project 4 112205523 112205849 - Gm25844 misc_RNA misc_RNA MGP_C3HHeJ_T0066109.1 MGP_C3HHeJ_G0028173.1 mouse_genomes_project 4 99095582 99160045 + MGP_C3HHeJ_P0066109 Atg4c protein_coding protein_coding MGP_C3HHeJ_T0066110.1 MGP_C3HHeJ_G0028173.1 mouse_genomes_project 4 99095795 99160041 + MGP_C3HHeJ_P0066110 Atg4c protein_coding protein_coding MGP_C3HHeJ_T0066111.1 MGP_C3HHeJ_G0028173.1 mouse_genomes_project 4 99120371 99124547 + Atg4c protein_coding processed_transcript MGP_C3HHeJ_T0066722.1 MGP_C3HHeJ_G0028305.1 mouse_genomes_project 4 116202748 116210839 + MGP_C3HHeJ_P0066722 Mob3c protein_coding protein_coding MGP_C3HHeJ_T0066723.1 MGP_C3HHeJ_G0028305.1 mouse_genomes_project 4 116202753 116206364 + Mob3c protein_coding retained_intron MGP_C3HHeJ_T0066724.1 MGP_C3HHeJ_G0028305.1 mouse_genomes_project 4 116203314 116206194 + MGP_C3HHeJ_P0066724 Mob3c protein_coding protein_coding MGP_C3HHeJ_T0068105.1 MGP_C3HHeJ_G0028609.1 mouse_genomes_project 4 134702381 134703765 - MGP_C3HHeJ_P0068105 Sh3bgrl3 protein_coding protein_coding MGP_C3HHeJ_T0068106.1 MGP_C3HHeJ_G0028609.1 mouse_genomes_project 4 134702388 134703715 - MGP_C3HHeJ_P0068106 Sh3bgrl3 protein_coding protein_coding MGP_C3HHeJ_T0068107.1 MGP_C3HHeJ_G0028609.1 mouse_genomes_project 4 134702815 134703713 - Sh3bgrl3 protein_coding retained_intron MGP_C3HHeJ_T0099344.1 MGP_C3HHeJ_G0037538.1 mouse_genomes_project 4 39315698 39315802 - Gm26084 snRNA snRNA MGP_C3HHeJ_T0014535.1 MGP_C3HHeJ_G0012639.1 mouse_genomes_project 4 109109174 109109410 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014590.1 MGP_C3HHeJ_G0012694.1 mouse_genomes_project 4 123896895 123897217 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066538.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243105 109309552 - MGP_C3HHeJ_P0066538 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066539.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243574 109397373 - MGP_C3HHeJ_P0066539 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066540.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243609 109309566 - MGP_C3HHeJ_P0066540 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066541.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243614 109397373 - MGP_C3HHeJ_P0066541 Osbpl9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066542.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243614 109397411 - MGP_C3HHeJ_P0066542 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066543.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243614 109397356 - MGP_C3HHeJ_P0066543 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066544.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109243933 109278389 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066545.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109244038 109397411 - MGP_C3HHeJ_P0066545 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066546.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109244046 109350409 - MGP_C3HHeJ_P0066546 Osbpl9 protein_coding protein_coding MGP_C3HHeJ_T0066547.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109253523 109255076 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066548.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109257095 109261924 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066549.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109257449 109309228 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066550.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109274028 109301299 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066551.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109274152 109350595 - Osbpl9 protein_coding retained_intron MGP_C3HHeJ_T0066552.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109277341 109279719 - Osbpl9 protein_coding retained_intron MGP_C3HHeJ_T0066553.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109278349 109299565 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066554.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109278386 109350924 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066555.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109325980 109397375 - Osbpl9 protein_coding processed_transcript MGP_C3HHeJ_T0066556.1 MGP_C3HHeJ_G0028263.1 mouse_genomes_project 4 109366018 109397373 - Osbpl9 protein_coding retained_intron MGP_C3HHeJ_T0099411.1 MGP_C3HHeJ_G0037605.1 mouse_genomes_project 4 152406061 152406171 + Gm23209 snRNA snRNA MGP_C3HHeJ_T0067497.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 126976172 127091725 - MGP_C3HHeJ_P0067497 Zmym4 protein_coding protein_coding MGP_C3HHeJ_T0067498.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 126982907 126984718 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067499.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127020083 127030627 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067500.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127025284 127030515 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067501.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127030344 127041905 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067502.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127041543 127044270 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067503.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127044268 127091770 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0067504.1 MGP_C3HHeJ_G0028485.1 mouse_genomes_project 4 127044301 127091794 - Zmym4 protein_coding processed_transcript MGP_C3HHeJ_T0065177.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285285 43301318 + MGP_C3HHeJ_P0065177 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065178.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285364 43299991 + MGP_C3HHeJ_P0065178 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065179.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285365 43304191 + MGP_C3HHeJ_P0065179 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065180.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285399 43293573 + Polr1e protein_coding processed_transcript MGP_C3HHeJ_T0065181.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43285937 43299738 + MGP_C3HHeJ_P0065181 Polr1e protein_coding protein_coding MGP_C3HHeJ_T0065182.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43295846 43299011 + Polr1e protein_coding processed_transcript MGP_C3HHeJ_T0065183.1 MGP_C3HHeJ_G0027938.1 mouse_genomes_project 4 43297964 43299986 + Polr1e protein_coding processed_transcript MGP_C3HHeJ_T0064447.1 MGP_C3HHeJ_G0027782.1 mouse_genomes_project 4 16628214 16725733 - MGP_C3HHeJ_P0064447 Wwp1 protein_coding protein_coding MGP_C3HHeJ_T0064448.1 MGP_C3HHeJ_G0027782.1 mouse_genomes_project 4 16629584 16693328 - MGP_C3HHeJ_P0064448 Wwp1 protein_coding protein_coding MGP_C3HHeJ_T0067310.1 MGP_C3HHeJ_G0028440.1 mouse_genomes_project 4 123685463 123706249 - MGP_C3HHeJ_P0067310 Akirin1 protein_coding protein_coding MGP_C3HHeJ_T0067311.1 MGP_C3HHeJ_G0028440.1 mouse_genomes_project 4 123688821 123699418 - Akirin1 protein_coding processed_transcript MGP_C3HHeJ_T0067312.1 MGP_C3HHeJ_G0028440.1 mouse_genomes_project 4 123689947 123706135 - Akirin1 protein_coding processed_transcript MGP_C3HHeJ_T0064439.1 MGP_C3HHeJ_G0027777.1 mouse_genomes_project 4 15845902 16127897 - MGP_C3HHeJ_P0064439 Cnbd1 protein_coding protein_coding MGP_C3HHeJ_T0014329.1 MGP_C3HHeJ_G0012433.1 mouse_genomes_project 4 30453466 30453793 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066416.1 MGP_C3HHeJ_G0028239.1 mouse_genomes_project 4 107999848 108007443 + MGP_C3HHeJ_P0066416 Magoh protein_coding protein_coding MGP_C3HHeJ_T0066417.1 MGP_C3HHeJ_G0028239.1 mouse_genomes_project 4 108003087 108007406 + Magoh protein_coding processed_transcript MGP_C3HHeJ_T0068759.1 MGP_C3HHeJ_G0028769.1 mouse_genomes_project 4 144781777 144870375 + MGP_C3HHeJ_P0068759 protein_coding protein_coding MGP_C3HHeJ_T0066996.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118387777 118391168 - MGP_C3HHeJ_P0066996 Dph2 protein_coding protein_coding MGP_C3HHeJ_T0066997.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118388041 118391156 - Dph2 protein_coding retained_intron MGP_C3HHeJ_T0066998.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118388050 118391159 - MGP_C3HHeJ_P0066998 Dph2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066999.1 MGP_C3HHeJ_G0028355.1 mouse_genomes_project 4 118390212 118391122 - Dph2 protein_coding retained_intron MGP_C3HHeJ_T0067101.1 MGP_C3HHeJ_G0028388.1 mouse_genomes_project 4 119724900 119730676 + MGP_C3HHeJ_P0067101 Svbp protein_coding protein_coding MGP_C3HHeJ_T0067102.1 MGP_C3HHeJ_G0028388.1 mouse_genomes_project 4 119725001 119730676 + MGP_C3HHeJ_P0067102 Svbp protein_coding protein_coding MGP_C3HHeJ_T0067103.1 MGP_C3HHeJ_G0028388.1 mouse_genomes_project 4 119725090 119730676 + MGP_C3HHeJ_P0067103 Svbp protein_coding protein_coding MGP_C3HHeJ_T0065623.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 61887364 62054965 + MGP_C3HHeJ_P0065623 Zfp618 protein_coding protein_coding MGP_C3HHeJ_T0065624.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 61887364 62031186 + MGP_C3HHeJ_P0065624 Zfp618 protein_coding protein_coding MGP_C3HHeJ_T0065625.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 61887365 62049283 + MGP_C3HHeJ_P0065625 Zfp618 protein_coding protein_coding MGP_C3HHeJ_T0065626.1 MGP_C3HHeJ_G0028059.1 mouse_genomes_project 4 62035839 62036868 + Zfp618 protein_coding processed_transcript MGP_C3HHeJ_T0067641.1 MGP_C3HHeJ_G0028517.1 mouse_genomes_project 4 129585194 129613699 - MGP_C3HHeJ_P0067641 Zbtb8a protein_coding protein_coding MGP_C3HHeJ_T0064657.1 MGP_C3HHeJ_G0027831.1 mouse_genomes_project 4 32360295 32448823 - MGP_C3HHeJ_P0064657 Zfp292 protein_coding protein_coding MGP_C3HHeJ_T0064658.1 MGP_C3HHeJ_G0027831.1 mouse_genomes_project 4 32360295 32448793 - MGP_C3HHeJ_P0064658 Zfp292 protein_coding protein_coding MGP_C3HHeJ_T0068315.1 MGP_C3HHeJ_G0028659.1 mouse_genomes_project 4 136956959 136996540 + MGP_C3HHeJ_P0068315 Asap3 protein_coding protein_coding MGP_C3HHeJ_T0014562.1 MGP_C3HHeJ_G0012666.1 mouse_genomes_project 4 118324131 118324607 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065382.1 MGP_C3HHeJ_G0027992.1 mouse_genomes_project 4 51131719 51147003 + MGP_C3HHeJ_P0065382 Toporsl protein_coding protein_coding MGP_C3HHeJ_T0065383.1 MGP_C3HHeJ_G0027992.1 mouse_genomes_project 4 51141784 51147000 + MGP_C3HHeJ_P0065383 Toporsl protein_coding protein_coding MGP_C3HHeJ_T0099404.1 MGP_C3HHeJ_G0037598.1 mouse_genomes_project 4 139788422 139788523 - Gm25280 snRNA snRNA MGP_C3HHeJ_T0014318.1 MGP_C3HHeJ_G0012422.1 mouse_genomes_project 4 26474888 26475609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099385.1 MGP_C3HHeJ_G0037579.1 mouse_genomes_project 4 121496031 121496135 + Gm24678 snRNA snRNA MGP_C3HHeJ_T0014343.1 MGP_C3HHeJ_G0012447.1 mouse_genomes_project 4 34907609 34908077 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017844.1 MGP_C3HHeJ_G0015321.1 mouse_genomes_project 4 95245953 95249402 + Gm12707 processed_transcript processed_transcript MGP_C3HHeJ_T0069210.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154539434 154591581 + MGP_C3HHeJ_P0069210 Chd5 protein_coding protein_coding MGP_C3HHeJ_T0069211.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154539434 154591581 + MGP_C3HHeJ_P0069211 Chd5 protein_coding protein_coding MGP_C3HHeJ_T0069212.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154539670 154591568 + MGP_C3HHeJ_P0069212 Chd5 protein_coding protein_coding MGP_C3HHeJ_T0069213.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154542378 154554382 + Chd5 protein_coding processed_transcript MGP_C3HHeJ_T0069214.1 MGP_C3HHeJ_G0028883.1 mouse_genomes_project 4 154572578 154591568 + Chd5 protein_coding processed_transcript MGP_C3HHeJ_T0099335.1 MGP_C3HHeJ_G0037529.1 mouse_genomes_project 4 29421625 29421743 - Gm26254 snRNA snRNA MGP_C3HHeJ_T0014326.1 MGP_C3HHeJ_G0012430.1 mouse_genomes_project 4 30050663 30051038 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099412.1 MGP_C3HHeJ_G0037606.1 mouse_genomes_project 4 153107359 153107519 + Gm23405 snRNA snRNA MGP_C3HHeJ_T0068357.1 MGP_C3HHeJ_G0028668.1 mouse_genomes_project 4 137400545 137418093 + MGP_C3HHeJ_P0068357 Lactbl1 protein_coding protein_coding MGP_C3HHeJ_T0069512.1 MGP_C3HHeJ_G0028937.1 mouse_genomes_project 4 158204457 158209176 - MGP_C3HHeJ_P0069512 Cptp protein_coding protein_coding MGP_C3HHeJ_T0069513.1 MGP_C3HHeJ_G0028937.1 mouse_genomes_project 4 158205032 158209098 - Cptp protein_coding processed_transcript MGP_C3HHeJ_T0069514.1 MGP_C3HHeJ_G0028937.1 mouse_genomes_project 4 158206099 158208554 - MGP_C3HHeJ_P0069514 Cptp protein_coding protein_coding MGP_C3HHeJ_T0014662.1 MGP_C3HHeJ_G0012766.1 mouse_genomes_project 4 156319654 156319760 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014489.1 MGP_C3HHeJ_G0012593.1 mouse_genomes_project 4 93549961 93550219 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067908.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132794307 132865342 - MGP_C3HHeJ_P0067908 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067909.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132794314 132865299 - MGP_C3HHeJ_P0067909 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067910.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132796646 132840502 - MGP_C3HHeJ_P0067910 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067911.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132799070 132811226 - Phactr4 protein_coding processed_transcript MGP_C3HHeJ_T0067912.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132811645 132865294 - MGP_C3HHeJ_P0067912 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0067913.1 MGP_C3HHeJ_G0028566.1 mouse_genomes_project 4 132819881 132840490 - MGP_C3HHeJ_P0067913 Phactr4 protein_coding protein_coding MGP_C3HHeJ_T0004491.1 MGP_C3HHeJ_G0003896.1 mouse_genomes_project 4 141194760 141196231 + Gm13027 antisense antisense MGP_C3HHeJ_T0069587.1 MGP_C3HHeJ_G0028950.1 mouse_genomes_project 4 158566039 158567328 - MGP_C3HHeJ_P0069587 Isg15 protein_coding protein_coding MGP_C3HHeJ_T0007731.1 MGP_C3HHeJ_G0006313.1 mouse_genomes_project 4 20347866 20481185 + Gm11884 lincRNA lincRNA MGP_C3HHeJ_T0004488.1 MGP_C3HHeJ_G0003893.1 mouse_genomes_project 4 139034479 139035404 - 1700095J12Rik antisense antisense MGP_C3HHeJ_T0067442.1 MGP_C3HHeJ_G0028472.1 mouse_genomes_project 4 126341002 126355089 + MGP_C3HHeJ_P0067442 Trappc3 protein_coding protein_coding MGP_C3HHeJ_T0067443.1 MGP_C3HHeJ_G0028472.1 mouse_genomes_project 4 126341077 126352162 + Trappc3 protein_coding processed_transcript MGP_C3HHeJ_T0067238.1 MGP_C3HHeJ_G0028422.1 mouse_genomes_project 4 122004434 122007232 - MGP_C3HHeJ_P0067238 Gm12886 protein_coding protein_coding MGP_C3HHeJ_T0010487.1 MGP_C3HHeJ_G0008620.1 mouse_genomes_project 4 7896889 7897022 + Mir684-2 miRNA miRNA MGP_C3HHeJ_T0004485.1 MGP_C3HHeJ_G0003892.1 mouse_genomes_project 4 138780497 138782079 - Gm13012 antisense antisense MGP_C3HHeJ_T0004486.1 MGP_C3HHeJ_G0003892.1 mouse_genomes_project 4 138780497 138781565 - Gm13012 antisense antisense MGP_C3HHeJ_T0004487.1 MGP_C3HHeJ_G0003892.1 mouse_genomes_project 4 138780497 138782090 - Gm13012 antisense antisense MGP_C3HHeJ_T0004357.1 MGP_C3HHeJ_G0003793.1 mouse_genomes_project 4 26079196 26080338 - Gm11915 antisense antisense MGP_C3HHeJ_T0100647.1 MGP_C3HHeJ_G0038841.1 mouse_genomes_project 4 82452363 82452482 + Gm24884 snoRNA snoRNA MGP_C3HHeJ_T0066512.1 MGP_C3HHeJ_G0028256.1 mouse_genomes_project 4 108882376 108945417 + MGP_C3HHeJ_P0066512 3110021N24Rik protein_coding protein_coding MGP_C3HHeJ_T0066583.1 MGP_C3HHeJ_G0028268.1 mouse_genomes_project 4 109712382 109741773 - MGP_C3HHeJ_P0066583 4930522H14Rik protein_coding protein_coding MGP_C3HHeJ_T0066584.1 MGP_C3HHeJ_G0028268.1 mouse_genomes_project 4 109712410 109741680 - MGP_C3HHeJ_P0066584 4930522H14Rik protein_coding protein_coding MGP_C3HHeJ_T0066753.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116415510 116438143 - MGP_C3HHeJ_P0066753 protein_coding protein_coding MGP_C3HHeJ_T0066754.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116415673 116431685 - MGP_C3HHeJ_P0066754 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066755.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116416575 116437647 - MGP_C3HHeJ_P0066755 protein_coding protein_coding MGP_C3HHeJ_T0066756.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116424543 116430155 - protein_coding processed_transcript MGP_C3HHeJ_T0066757.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116429029 116431554 - protein_coding retained_intron MGP_C3HHeJ_T0066758.1 MGP_C3HHeJ_G0028311.1 mouse_genomes_project 4 116431654 116432591 - protein_coding processed_transcript MGP_C3HHeJ_T0014528.1 MGP_C3HHeJ_G0012632.1 mouse_genomes_project 4 107798427 107798978 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0065551.1 MGP_C3HHeJ_G0028038.1 mouse_genomes_project 4 58351625 58393771 + MGP_C3HHeJ_P0065551 Hsdl2 protein_coding protein_coding MGP_C3HHeJ_T0065552.1 MGP_C3HHeJ_G0028038.1 mouse_genomes_project 4 58351707 58393770 + MGP_C3HHeJ_P0065552 Hsdl2 protein_coding protein_coding MGP_C3HHeJ_T0065553.1 MGP_C3HHeJ_G0028038.1 mouse_genomes_project 4 58367253 58374394 + MGP_C3HHeJ_P0065553 Hsdl2 protein_coding protein_coding MGP_C3HHeJ_T0066842.1 MGP_C3HHeJ_G0028328.1 mouse_genomes_project 4 117119903 117126944 - MGP_C3HHeJ_P0066842 Mmachc protein_coding protein_coding MGP_C3HHeJ_T0066843.1 MGP_C3HHeJ_G0028328.1 mouse_genomes_project 4 117123225 117126826 - Mmachc protein_coding processed_transcript MGP_C3HHeJ_T0065190.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43572639 43591198 + MGP_C3HHeJ_P0065190 Trmt10b protein_coding protein_coding MGP_C3HHeJ_T0065191.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43572667 43579904 + MGP_C3HHeJ_P0065191 Trmt10b protein_coding protein_coding MGP_C3HHeJ_T0065192.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575929 43584821 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0065193.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575949 43590209 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0065194.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575949 43579901 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0065195.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43575949 43590209 + MGP_C3HHeJ_P0065195 Trmt10b protein_coding protein_coding MGP_C3HHeJ_T0065196.1 MGP_C3HHeJ_G0027941.1 mouse_genomes_project 4 43589164 43590115 + Trmt10b protein_coding processed_transcript MGP_C3HHeJ_T0010486.1 MGP_C3HHeJ_G0008619.1 mouse_genomes_project 4 7612613 7612720 + n-TSaga9 miRNA miRNA MGP_C3HHeJ_T0065752.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625681 80794782 - MGP_C3HHeJ_P0065752 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065753.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625686 80794784 - MGP_C3HHeJ_P0065753 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065754.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625686 80682393 - MGP_C3HHeJ_P0065754 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065755.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80625697 80794678 - MGP_C3HHeJ_P0065755 Mpdz protein_coding unknown_likely_coding MGP_C3HHeJ_T0065756.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80626416 80632719 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065757.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80626519 80642761 - MGP_C3HHeJ_P0065757 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065758.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80630170 80631880 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065759.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80630554 80639789 - MGP_C3HHeJ_P0065759 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065760.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80631757 80635252 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065761.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80637068 80640006 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065762.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80639735 80640351 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0065763.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80653964 80667688 - MGP_C3HHeJ_P0065763 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065764.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80667510 80679562 - MGP_C3HHeJ_P0065764 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065765.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80667532 80682351 - MGP_C3HHeJ_P0065765 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065766.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80701909 80716513 - MGP_C3HHeJ_P0065766 Mpdz protein_coding protein_coding MGP_C3HHeJ_T0065767.1 MGP_C3HHeJ_G0028093.1 mouse_genomes_project 4 80762896 80794792 - Mpdz protein_coding retained_intron MGP_C3HHeJ_T0066370.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107402250 107418291 - MGP_C3HHeJ_P0066370 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066371.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107402952 107418264 - MGP_C3HHeJ_P0066371 Dio1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066372.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403115 107418246 - MGP_C3HHeJ_P0066372 Dio1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066373.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403119 107418246 - MGP_C3HHeJ_P0066373 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066374.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403149 107418240 - MGP_C3HHeJ_P0066374 Dio1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0066375.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403149 107418240 - MGP_C3HHeJ_P0066375 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066376.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107403149 107418240 - MGP_C3HHeJ_P0066376 Dio1 protein_coding protein_coding MGP_C3HHeJ_T0066377.1 MGP_C3HHeJ_G0028233.1 mouse_genomes_project 4 107410958 107418188 - Dio1 protein_coding processed_transcript MGP_C3HHeJ_T0068517.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184713 140271638 + MGP_C3HHeJ_P0068517 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068518.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184715 140283303 + MGP_C3HHeJ_P0068518 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068519.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184730 140230578 + Capzb protein_coding retained_intron MGP_C3HHeJ_T0068520.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184760 140283359 + Capzb protein_coding processed_transcript MGP_C3HHeJ_T0068521.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140184817 140282634 + MGP_C3HHeJ_P0068521 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068522.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140185787 140282984 + MGP_C3HHeJ_P0068522 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068523.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140185902 140230838 + Capzb protein_coding retained_intron MGP_C3HHeJ_T0068524.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140191068 140253466 + MGP_C3HHeJ_P0068524 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068525.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140218433 140278635 + MGP_C3HHeJ_P0068525 Capzb protein_coding protein_coding MGP_C3HHeJ_T0068526.1 MGP_C3HHeJ_G0028710.1 mouse_genomes_project 4 140280490 140281360 + Capzb protein_coding processed_transcript MGP_C3HHeJ_T0068798.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413061 146439708 + Dhrs3 protein_coding processed_transcript MGP_C3HHeJ_T0068799.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413067 146439634 + MGP_C3HHeJ_P0068799 Dhrs3 protein_coding protein_coding MGP_C3HHeJ_T0068800.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413149 146447753 + MGP_C3HHeJ_P0068800 Dhrs3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068801.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146413445 146447763 + MGP_C3HHeJ_P0068801 Dhrs3 protein_coding protein_coding MGP_C3HHeJ_T0068802.1 MGP_C3HHeJ_G0028801.1 mouse_genomes_project 4 146438610 146439708 + Dhrs3 protein_coding retained_intron MGP_C3HHeJ_T0010536.1 MGP_C3HHeJ_G0008669.1 mouse_genomes_project 4 124748540 124748649 + Mir698 miRNA miRNA MGP_C3HHeJ_T0064681.1 MGP_C3HHeJ_G0027837.1 mouse_genomes_project 4 37360041 37361523 + MGP_C3HHeJ_P0064681 1700009N14Rik protein_coding protein_coding MGP_C3HHeJ_T0068783.1 MGP_C3HHeJ_G0028787.1 mouse_genomes_project 4 145839290 145841037 + MGP_C3HHeJ_P0068783 protein_coding protein_coding MGP_C3HHeJ_T0065039.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41745869 41750590 + MGP_C3HHeJ_P0065039 Creb3 protein_coding protein_coding MGP_C3HHeJ_T0065040.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746349 41750327 + MGP_C3HHeJ_P0065040 Creb3 protein_coding protein_coding MGP_C3HHeJ_T0065041.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746483 41748849 + MGP_C3HHeJ_P0065041 Creb3 protein_coding protein_coding MGP_C3HHeJ_T0065042.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746803 41750057 + Creb3 protein_coding retained_intron MGP_C3HHeJ_T0065043.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41746966 41749083 + Creb3 protein_coding retained_intron MGP_C3HHeJ_T0065044.1 MGP_C3HHeJ_G0027911.1 mouse_genomes_project 4 41749544 41750234 + Creb3 protein_coding retained_intron MGP_C3HHeJ_T0100633.1 MGP_C3HHeJ_G0038827.1 mouse_genomes_project 4 55522701 55522833 - Gm25053 snoRNA snoRNA MGP_C3HHeJ_T0067505.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127143689 127154737 + MGP_C3HHeJ_P0067505 Sfpq protein_coding protein_coding MGP_C3HHeJ_T0067506.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127145748 127149684 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067507.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127145892 127160501 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067508.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127148291 127148982 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067509.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127148323 127150383 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0067510.1 MGP_C3HHeJ_G0028486.1 mouse_genomes_project 4 127148812 127149917 + Sfpq protein_coding processed_transcript MGP_C3HHeJ_T0069345.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157280906 157308709 - MGP_C3HHeJ_P0069345 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069346.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157280917 157293980 - Plch2 protein_coding retained_intron MGP_C3HHeJ_T0069347.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281158 157304732 - MGP_C3HHeJ_P0069347 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069348.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281158 157287609 - MGP_C3HHeJ_P0069348 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069349.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281158 157317179 - MGP_C3HHeJ_P0069349 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069350.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281164 157290437 - Plch2 protein_coding retained_intron MGP_C3HHeJ_T0069351.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281168 157308709 - MGP_C3HHeJ_P0069351 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069352.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157281453 157340802 - MGP_C3HHeJ_P0069352 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069353.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157283490 157352403 - MGP_C3HHeJ_P0069353 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069354.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157295959 157308709 - MGP_C3HHeJ_P0069354 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069355.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157304795 157354126 - MGP_C3HHeJ_P0069355 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069356.1 MGP_C3HHeJ_G0028907.1 mouse_genomes_project 4 157306801 157317175 - MGP_C3HHeJ_P0069356 Plch2 protein_coding protein_coding MGP_C3HHeJ_T0069259.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156291310 156296457 - MGP_C3HHeJ_P0069259 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069260.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156291428 156296753 - MGP_C3HHeJ_P0069260 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069261.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156291428 156296807 - MGP_C3HHeJ_P0069261 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069262.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156292296 156297071 - MGP_C3HHeJ_P0069262 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069263.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156292301 156296993 - MGP_C3HHeJ_P0069263 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069264.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294150 156296777 - MGP_C3HHeJ_P0069264 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069265.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294150 156296708 - MGP_C3HHeJ_P0069265 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069266.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294150 156296457 - MGP_C3HHeJ_P0069266 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069267.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294151 156295196 - MGP_C3HHeJ_P0069267 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069268.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294151 156296991 - MGP_C3HHeJ_P0069268 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069269.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294421 156296878 - MGP_C3HHeJ_P0069269 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069270.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294539 156296504 - MGP_C3HHeJ_P0069270 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069271.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156294564 156295164 - MGP_C3HHeJ_P0069271 Smim1 protein_coding protein_coding MGP_C3HHeJ_T0069272.1 MGP_C3HHeJ_G0028891.1 mouse_genomes_project 4 156296146 156296753 - Smim1 protein_coding processed_transcript MGP_C3HHeJ_T0068253.1 MGP_C3HHeJ_G0028644.1 mouse_genomes_project 4 136387463 136409182 + MGP_C3HHeJ_P0068253 Ifnlr1 protein_coding protein_coding MGP_C3HHeJ_T0065357.1 MGP_C3HHeJ_G0027985.1 mouse_genomes_project 4 48059746 48073085 - MGP_C3HHeJ_P0065357 Tmem246 protein_coding protein_coding MGP_C3HHeJ_T0065358.1 MGP_C3HHeJ_G0027985.1 mouse_genomes_project 4 48062006 48072679 - MGP_C3HHeJ_P0065358 Tmem246 protein_coding protein_coding MGP_C3HHeJ_T0065359.1 MGP_C3HHeJ_G0027985.1 mouse_genomes_project 4 48062292 48069131 - MGP_C3HHeJ_P0065359 Tmem246 protein_coding protein_coding MGP_C3HHeJ_T0004346.1 MGP_C3HHeJ_G0003784.1 mouse_genomes_project 4 6167987 6181755 - Gm11817 antisense antisense MGP_C3HHeJ_T0067450.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126405207 126408775 - MGP_C3HHeJ_P0067450 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0067451.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126405209 126408286 - MGP_C3HHeJ_P0067451 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0067452.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126406794 126408717 - Tekt2 protein_coding retained_intron MGP_C3HHeJ_T0067453.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126407426 126408730 - MGP_C3HHeJ_P0067453 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0067454.1 MGP_C3HHeJ_G0028475.1 mouse_genomes_project 4 126407970 126408522 - MGP_C3HHeJ_P0067454 Tekt2 protein_coding protein_coding MGP_C3HHeJ_T0068662.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142537857 142549853 - MGP_C3HHeJ_P0068662 Clcnkb protein_coding protein_coding MGP_C3HHeJ_T0068663.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142537857 142549853 - MGP_C3HHeJ_P0068663 Clcnkb protein_coding protein_coding MGP_C3HHeJ_T0068664.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142537857 142538862 - MGP_C3HHeJ_P0068664 Clcnkb protein_coding protein_coding MGP_C3HHeJ_T0068665.1 MGP_C3HHeJ_G0028743.1 mouse_genomes_project 4 142548134 142549800 - Clcnkb protein_coding processed_transcript MGP_C3HHeJ_T0007931.1 MGP_C3HHeJ_G0006467.1 mouse_genomes_project 4 141986127 141992766 + 4930515B02Rik lincRNA lincRNA MGP_C3HHeJ_T0068750.1 MGP_C3HHeJ_G0028765.1 mouse_genomes_project 4 144606570 144628885 + MGP_C3HHeJ_P0068750 Lrrc38 protein_coding protein_coding MGP_C3HHeJ_T0007726.1 MGP_C3HHeJ_G0006309.1 mouse_genomes_project 4 16733446 16736601 - Gm12354 lincRNA lincRNA MGP_C3HHeJ_T0007727.1 MGP_C3HHeJ_G0006309.1 mouse_genomes_project 4 16733446 16736914 - Gm12354 lincRNA lincRNA MGP_C3HHeJ_T0067267.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123031731 123044523 - MGP_C3HHeJ_P0067267 Ppie protein_coding protein_coding MGP_C3HHeJ_T0067268.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123031936 123041472 - Ppie protein_coding processed_transcript MGP_C3HHeJ_T0067269.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123032317 123043598 - Ppie protein_coding processed_transcript MGP_C3HHeJ_T0067270.1 MGP_C3HHeJ_G0028432.1 mouse_genomes_project 4 123040975 123044502 - Ppie protein_coding processed_transcript MGP_C3HHeJ_T0066327.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154233 107166255 - MGP_C3HHeJ_P0066327 Mrpl37 protein_coding protein_coding MGP_C3HHeJ_T0066328.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154244 107158310 - Mrpl37 protein_coding retained_intron MGP_C3HHeJ_T0066329.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154327 107164157 - Mrpl37 protein_coding processed_transcript MGP_C3HHeJ_T0066330.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107154334 107166207 - Mrpl37 protein_coding processed_transcript MGP_C3HHeJ_T0066331.1 MGP_C3HHeJ_G0028225.1 mouse_genomes_project 4 107163782 107164744 - Mrpl37 protein_coding retained_intron MGP_C3HHeJ_T0067123.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119808190 119814802 - MGP_C3HHeJ_P0067123 Ybx1 protein_coding protein_coding MGP_C3HHeJ_T0067124.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119810007 119827992 - MGP_C3HHeJ_P0067124 Ybx1 protein_coding protein_coding MGP_C3HHeJ_T0067125.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119810142 119811426 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067126.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119813152 119814196 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067127.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119814282 119827878 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067128.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119817011 119827868 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0067129.1 MGP_C3HHeJ_G0028393.1 mouse_genomes_project 4 119827010 119827888 - Ybx1 protein_coding processed_transcript MGP_C3HHeJ_T0007846.1 MGP_C3HHeJ_G0006408.1 mouse_genomes_project 4 114939066 114946002 + Gm12829 lincRNA lincRNA MGP_C3HHeJ_T0065352.1 MGP_C3HHeJ_G0027983.1 mouse_genomes_project 4 47992883 48007491 + MGP_C3HHeJ_P0065352 Zfp189 protein_coding protein_coding MGP_C3HHeJ_T0065353.1 MGP_C3HHeJ_G0027983.1 mouse_genomes_project 4 47992924 48007491 + MGP_C3HHeJ_P0065353 Zfp189 protein_coding protein_coding MGP_C3HHeJ_T0014658.1 MGP_C3HHeJ_G0012762.1 mouse_genomes_project 4 154344425 154344911 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007870.1 MGP_C3HHeJ_G0006424.1 mouse_genomes_project 4 127624034 127626059 + 4930471C06Rik lincRNA lincRNA MGP_C3HHeJ_T0007871.1 MGP_C3HHeJ_G0006424.1 mouse_genomes_project 4 127624120 127626059 + 4930471C06Rik lincRNA lincRNA MGP_C3HHeJ_T0065597.1 MGP_C3HHeJ_G0028053.1 mouse_genomes_project 4 61384149 61402210 + MGP_C3HHeJ_P0065597 Bspry protein_coding protein_coding MGP_C3HHeJ_T0065598.1 MGP_C3HHeJ_G0028053.1 mouse_genomes_project 4 61384149 61402210 + MGP_C3HHeJ_P0065598 Bspry protein_coding protein_coding MGP_C3HHeJ_T0065599.1 MGP_C3HHeJ_G0028053.1 mouse_genomes_project 4 61384185 61390514 + MGP_C3HHeJ_P0065599 Bspry protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068796.1 MGP_C3HHeJ_G0028799.1 mouse_genomes_project 4 146238296 146255743 - MGP_C3HHeJ_P0068796 Gm13178 protein_coding protein_coding MGP_C3HHeJ_T0064890.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41133701 41135428 + 1700022I11Rik protein_coding processed_transcript MGP_C3HHeJ_T0064891.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41133728 41135394 + MGP_C3HHeJ_P0064891 1700022I11Rik protein_coding protein_coding MGP_C3HHeJ_T0064892.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41134029 41135584 + MGP_C3HHeJ_P0064892 1700022I11Rik protein_coding protein_coding MGP_C3HHeJ_T0064893.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41134041 41149526 + MGP_C3HHeJ_P0064893 1700022I11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064894.1 MGP_C3HHeJ_G0027893.1 mouse_genomes_project 4 41134041 41138422 + MGP_C3HHeJ_P0064894 1700022I11Rik protein_coding protein_coding MGP_C3HHeJ_T0069032.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152039794 152064486 - MGP_C3HHeJ_P0069032 H6pd protein_coding protein_coding MGP_C3HHeJ_T0069033.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152039794 152070059 - MGP_C3HHeJ_P0069033 H6pd protein_coding protein_coding MGP_C3HHeJ_T0069034.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152057212 152062621 - MGP_C3HHeJ_P0069034 H6pd protein_coding protein_coding MGP_C3HHeJ_T0069035.1 MGP_C3HHeJ_G0028850.1 mouse_genomes_project 4 152061140 152062646 - H6pd protein_coding processed_transcript MGP_C3HHeJ_T0014242.1 MGP_C3HHeJ_G0012346.1 mouse_genomes_project 4 7547667 7548853 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064785.1 MGP_C3HHeJ_G0027863.1 mouse_genomes_project 4 39550200 39619590 + MGP_C3HHeJ_P0064785 Dnaic1 protein_coding protein_coding MGP_C3HHeJ_T0064786.1 MGP_C3HHeJ_G0027863.1 mouse_genomes_project 4 39613074 39619590 + Dnaic1 protein_coding retained_intron MGP_C3HHeJ_T0064787.1 MGP_C3HHeJ_G0027863.1 mouse_genomes_project 4 39614779 39619590 + MGP_C3HHeJ_P0064787 Dnaic1 protein_coding protein_coding MGP_C3HHeJ_T0014403.1 MGP_C3HHeJ_G0012507.1 mouse_genomes_project 4 56113562 56115551 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099370.1 MGP_C3HHeJ_G0037564.1 mouse_genomes_project 4 101093057 101093161 + Gm24468 snRNA snRNA MGP_C3HHeJ_T0068569.1 MGP_C3HHeJ_G0028722.1 mouse_genomes_project 4 141080634 141318003 - MGP_C3HHeJ_P0068569 Igsf21 protein_coding protein_coding MGP_C3HHeJ_T0004366.1 MGP_C3HHeJ_G0003800.1 mouse_genomes_project 4 39623626 39624519 + Gm12405 antisense antisense MGP_C3HHeJ_T0069057.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152364389 152723407 + MGP_C3HHeJ_P0069057 Rere protein_coding protein_coding MGP_C3HHeJ_T0069058.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152364555 152365210 + Rere protein_coding processed_transcript MGP_C3HHeJ_T0069059.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152486271 152721379 + MGP_C3HHeJ_P0069059 Rere protein_coding unknown_likely_coding MGP_C3HHeJ_T0069060.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152494943 152560733 + MGP_C3HHeJ_P0069060 Rere protein_coding protein_coding MGP_C3HHeJ_T0069061.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152579635 152723413 + MGP_C3HHeJ_P0069061 Rere protein_coding protein_coding MGP_C3HHeJ_T0069062.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152671475 152672388 + Rere protein_coding processed_transcript MGP_C3HHeJ_T0069063.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152671544 152713953 + Rere protein_coding processed_transcript MGP_C3HHeJ_T0069064.1 MGP_C3HHeJ_G0028856.1 mouse_genomes_project 4 152719155 152721718 + MGP_C3HHeJ_P0069064 Rere protein_coding protein_coding MGP_C3HHeJ_T0066135.1 MGP_C3HHeJ_G0028181.1 mouse_genomes_project 4 100404187 100475130 + MGP_C3HHeJ_P0066135 Ube2u protein_coding protein_coding MGP_C3HHeJ_T0066136.1 MGP_C3HHeJ_G0028181.1 mouse_genomes_project 4 100404205 100475128 + MGP_C3HHeJ_P0066136 Ube2u protein_coding protein_coding MGP_C3HHeJ_T0098131.1 MGP_C3HHeJ_G0036343.1 mouse_genomes_project 4 52419837 52419956 + n-R5s185 rRNA rRNA MGP_C3HHeJ_T0068888.1 MGP_C3HHeJ_G0028824.1 mouse_genomes_project 4 150193345 150241761 - MGP_C3HHeJ_P0068888 Ptchd2 protein_coding protein_coding MGP_C3HHeJ_T0068889.1 MGP_C3HHeJ_G0028824.1 mouse_genomes_project 4 150211985 150214614 - Ptchd2 protein_coding retained_intron MGP_C3HHeJ_T0068890.1 MGP_C3HHeJ_G0028824.1 mouse_genomes_project 4 150213653 150215094 - Ptchd2 protein_coding processed_transcript MGP_C3HHeJ_T0014526.1 MGP_C3HHeJ_G0012630.1 mouse_genomes_project 4 107378157 107378593 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004370.1 MGP_C3HHeJ_G0003803.1 mouse_genomes_project 4 41773033 41795407 + Gm12472 antisense antisense MGP_C3HHeJ_T0010567.1 MGP_C3HHeJ_G0008700.1 mouse_genomes_project 4 151708082 151708146 - Mir7023 miRNA miRNA MGP_C3HHeJ_T0068762.1 MGP_C3HHeJ_G0028772.1 mouse_genomes_project 4 144936702 144944908 - MGP_C3HHeJ_P0068762 Oog3 protein_coding protein_coding MGP_C3HHeJ_T0102001.1 MGP_C3HHeJ_G0039966.1 mouse_genomes_project 4 96123137 96147161 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066611.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619397 111664505 + MGP_C3HHeJ_P0066611 Bend5 protein_coding protein_coding MGP_C3HHeJ_T0066612.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619438 111637436 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0066613.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619479 111664127 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0066614.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111619598 111624934 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0066615.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111637386 111664503 + MGP_C3HHeJ_P0066615 Bend5 protein_coding protein_coding MGP_C3HHeJ_T0066616.1 MGP_C3HHeJ_G0028274.1 mouse_genomes_project 4 111637508 111664134 + Bend5 protein_coding processed_transcript MGP_C3HHeJ_T0064768.1 MGP_C3HHeJ_G0027859.1 mouse_genomes_project 4 39441882 39457658 + MGP_C3HHeJ_P0064768 Nudt2 protein_coding protein_coding MGP_C3HHeJ_T0014542.1 MGP_C3HHeJ_G0012646.1 mouse_genomes_project 4 112000421 112001415 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0066378.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425380 107474592 + MGP_C3HHeJ_P0066378 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066379.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425386 107432475 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066380.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425401 107463134 + MGP_C3HHeJ_P0066380 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066381.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425429 107456881 + MGP_C3HHeJ_P0066381 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066382.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107425454 107430052 + MGP_C3HHeJ_P0066382 Yipf1 protein_coding protein_coding MGP_C3HHeJ_T0066383.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107426148 107426857 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066384.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107426782 107456492 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066385.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107430006 107474593 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066386.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107435506 107448316 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066387.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107454924 107464251 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0066388.1 MGP_C3HHeJ_G0028234.1 mouse_genomes_project 4 107456367 107474592 + Yipf1 protein_coding processed_transcript MGP_C3HHeJ_T0099341.1 MGP_C3HHeJ_G0037535.1 mouse_genomes_project 4 38994296 38994403 + Gm25637 snRNA snRNA MGP_C3HHeJ_T0067874.1 MGP_C3HHeJ_G0028558.1 mouse_genomes_project 4 132477426 132479722 + MGP_C3HHeJ_P0067874 Gm10300 protein_coding protein_coding MGP_C3HHeJ_T0069091.1 MGP_C3HHeJ_G0028862.1 mouse_genomes_project 4 153144780 153149498 + MGP_C3HHeJ_P0069091 Uts2 protein_coding protein_coding MGP_C3HHeJ_T0100621.1 MGP_C3HHeJ_G0038815.1 mouse_genomes_project 4 44832010 44832141 + Gm22247 snoRNA snoRNA MGP_C3HHeJ_T0001397.1 MGP_C3HHeJ_G0001327.1 mouse_genomes_project 4 154183929 154186790 - TEC TEC MGP_C3HHeJ_T0014630.1 MGP_C3HHeJ_G0012734.1 mouse_genomes_project 4 138035921 138036608 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007894.1 MGP_C3HHeJ_G0006441.1 mouse_genomes_project 4 132027544 132052848 - Gm12962 lincRNA lincRNA MGP_C3HHeJ_T0007895.1 MGP_C3HHeJ_G0006441.1 mouse_genomes_project 4 132027872 132058583 - Gm12962 lincRNA lincRNA MGP_C3HHeJ_T0067914.1 MGP_C3HHeJ_G0028567.1 mouse_genomes_project 4 132912867 132918063 - MGP_C3HHeJ_P0067914 Med18 protein_coding protein_coding MGP_C3HHeJ_T0067915.1 MGP_C3HHeJ_G0028567.1 mouse_genomes_project 4 132914096 132917473 - MGP_C3HHeJ_P0067915 Med18 protein_coding protein_coding MGP_C3HHeJ_T0010537.1 MGP_C3HHeJ_G0008670.1 mouse_genomes_project 4 126649889 126649948 + Mir7119 miRNA miRNA MGP_C3HHeJ_T0102022.1 MGP_C3HHeJ_G0039987.1 mouse_genomes_project 4 144663687 144664757 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0066935.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730779 117754825 + MGP_C3HHeJ_P0066935 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066936.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730868 117754759 + MGP_C3HHeJ_P0066936 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066937.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730870 117754827 + MGP_C3HHeJ_P0066937 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066938.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117730890 117754141 + Tmem53 protein_coding processed_transcript MGP_C3HHeJ_T0066939.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117731168 117754825 + MGP_C3HHeJ_P0066939 Tmem53 protein_coding protein_coding MGP_C3HHeJ_T0066940.1 MGP_C3HHeJ_G0028345.1 mouse_genomes_project 4 117751615 117754827 + Tmem53 protein_coding processed_transcript MGP_C3HHeJ_T0014544.1 MGP_C3HHeJ_G0012648.1 mouse_genomes_project 4 112000424 112001415 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0064366.1 MGP_C3HHeJ_G0027756.1 mouse_genomes_project 4 8576903 8635036 + MGP_C3HHeJ_P0064366 Cdh17 protein_coding protein_coding MGP_C3HHeJ_T0064367.1 MGP_C3HHeJ_G0027756.1 mouse_genomes_project 4 8576949 8628627 + MGP_C3HHeJ_P0064367 Cdh17 protein_coding protein_coding MGP_C3HHeJ_T0067076.1 MGP_C3HHeJ_G0028378.1 mouse_genomes_project 4 119318959 119342198 - MGP_C3HHeJ_P0067076 protein_coding protein_coding MGP_C3HHeJ_T0064715.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38657381 38680196 - MGP_C3HHeJ_P0064715 Smu1 protein_coding protein_coding MGP_C3HHeJ_T0064716.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38664379 38680156 - Smu1 protein_coding processed_transcript MGP_C3HHeJ_T0064717.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38676650 38680104 - Smu1 protein_coding processed_transcript MGP_C3HHeJ_T0064718.1 MGP_C3HHeJ_G0027845.1 mouse_genomes_project 4 38677962 38679671 - Smu1 protein_coding processed_transcript MGP_C3HHeJ_T0065017.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41686549 41692589 + MGP_C3HHeJ_P0065017 Car9 protein_coding protein_coding MGP_C3HHeJ_T0065018.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41686568 41693208 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065019.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41686856 41692537 + MGP_C3HHeJ_P0065019 Car9 protein_coding protein_coding MGP_C3HHeJ_T0065020.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41687431 41688529 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065021.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41688097 41688590 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065022.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41688491 41691934 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0065023.1 MGP_C3HHeJ_G0027908.1 mouse_genomes_project 4 41691610 41692421 + Car9 protein_coding processed_transcript MGP_C3HHeJ_T0100603.1 MGP_C3HHeJ_G0038797.1 mouse_genomes_project 4 4514307 4514439 + Gm23860 snoRNA snoRNA MGP_C3HHeJ_T0065908.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87711829 87739097 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065909.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87711830 88028307 + MGP_C3HHeJ_P0065909 Focad protein_coding protein_coding MGP_C3HHeJ_T0065910.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87711845 87802151 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065911.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87738583 88028305 + MGP_C3HHeJ_P0065911 Focad protein_coding protein_coding MGP_C3HHeJ_T0065912.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87741718 87771665 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065913.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87922144 87947645 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065914.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 87968560 88028310 + Focad protein_coding retained_intron MGP_C3HHeJ_T0065916.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 88016821 88024519 + Focad protein_coding processed_transcript MGP_C3HHeJ_T0065917.1 MGP_C3HHeJ_G0028115.1 mouse_genomes_project 4 88017036 88028312 + MGP_C3HHeJ_P0065917 Focad protein_coding protein_coding MGP_C3HHeJ_T0064593.1 MGP_C3HHeJ_G0027815.1 mouse_genomes_project 4 30488236 30502143 + MGP_C3HHeJ_P0064593 Ube2j1 protein_coding protein_coding MGP_C3HHeJ_T0064594.1 MGP_C3HHeJ_G0027815.1 mouse_genomes_project 4 30488294 30509242 + MGP_C3HHeJ_P0064594 Ube2j1 protein_coding protein_coding MGP_C3HHeJ_T0068847.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149933899 149969425 - MGP_C3HHeJ_P0068847 Clcn6 protein_coding protein_coding MGP_C3HHeJ_T0068848.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149935790 149969417 - MGP_C3HHeJ_P0068848 Clcn6 protein_coding protein_coding MGP_C3HHeJ_T0068849.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149936245 149969374 - MGP_C3HHeJ_P0068849 Clcn6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068850.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149954094 149969367 - Clcn6 protein_coding processed_transcript MGP_C3HHeJ_T0068851.1 MGP_C3HHeJ_G0028816.1 mouse_genomes_project 4 149956062 149969166 - MGP_C3HHeJ_P0068851 Clcn6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014250.1 MGP_C3HHeJ_G0012354.1 mouse_genomes_project 4 8988401 8988807 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0068108.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134704824 134723404 - MGP_C3HHeJ_P0068108 Cep85 protein_coding unknown_likely_coding MGP_C3HHeJ_T0068109.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134704832 134765268 - MGP_C3HHeJ_P0068109 Cep85 protein_coding protein_coding MGP_C3HHeJ_T0068110.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134704840 134765137 - MGP_C3HHeJ_P0068110 Cep85 protein_coding protein_coding MGP_C3HHeJ_T0068111.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134706069 134707546 - Cep85 protein_coding processed_transcript MGP_C3HHeJ_T0068112.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134707135 134715823 - Cep85 protein_coding retained_intron MGP_C3HHeJ_T0068113.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134735154 134737368 - Cep85 protein_coding retained_intron MGP_C3HHeJ_T0068114.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134738792 134739815 - Cep85 protein_coding processed_transcript MGP_C3HHeJ_T0068115.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134738988 134765241 - MGP_C3HHeJ_P0068115 Cep85 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0068116.1 MGP_C3HHeJ_G0028610.1 mouse_genomes_project 4 134750254 134765207 - Cep85 protein_coding retained_intron MGP_C3HHeJ_T0068230.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062740 136090588 - MGP_C3HHeJ_P0068230 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068231.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062740 136078057 - MGP_C3HHeJ_P0068231 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068232.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062740 136090557 - MGP_C3HHeJ_P0068232 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068233.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136062741 136078074 - MGP_C3HHeJ_P0068233 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068234.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136063395 136078047 - MGP_C3HHeJ_P0068234 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068235.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136063685 136067742 - Ncmap protein_coding processed_transcript MGP_C3HHeJ_T0068236.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136063820 136078074 - MGP_C3HHeJ_P0068236 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0068237.1 MGP_C3HHeJ_G0028639.1 mouse_genomes_project 4 136065095 136090594 - MGP_C3HHeJ_P0068237 Ncmap protein_coding protein_coding MGP_C3HHeJ_T0069022.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151951588 152012450 - MGP_C3HHeJ_P0069022 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069023.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151953272 151964988 - MGP_C3HHeJ_P0069023 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069024.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151953519 151962461 - MGP_C3HHeJ_P0069024 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069025.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151961678 152011212 - MGP_C3HHeJ_P0069025 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069026.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962162 151977671 - MGP_C3HHeJ_P0069026 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069027.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962166 151986705 - MGP_C3HHeJ_P0069027 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069028.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962171 152000072 - MGP_C3HHeJ_P0069028 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069029.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962220 152003565 - MGP_C3HHeJ_P0069029 Spsb1 protein_coding protein_coding MGP_C3HHeJ_T0069030.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151962313 152012450 - Spsb1 protein_coding processed_transcript MGP_C3HHeJ_T0069031.1 MGP_C3HHeJ_G0028849.1 mouse_genomes_project 4 151964736 152012438 - Spsb1 protein_coding processed_transcript MGP_C3HHeJ_T0068667.1 MGP_C3HHeJ_G0028745.1 mouse_genomes_project 4 142568638 142572072 - MGP_C3HHeJ_P0068667 Gm694 protein_coding protein_coding MGP_C3HHeJ_T0007773.1 MGP_C3HHeJ_G0006350.1 mouse_genomes_project 4 55945173 55952373 + Gm12536 lincRNA lincRNA MGP_C3HHeJ_T0069317.1 MGP_C3HHeJ_G0028900.1 mouse_genomes_project 4 156973495 156974930 - MGP_C3HHeJ_P0069317 Actrt2 protein_coding protein_coding MGP_C3HHeJ_T0068813.1 MGP_C3HHeJ_G0028803.1 mouse_genomes_project 4 146740580 146773687 - MGP_C3HHeJ_P0068813 Tnfrsf1b protein_coding protein_coding MGP_C3HHeJ_T0068814.1 MGP_C3HHeJ_G0028803.1 mouse_genomes_project 4 146752483 146773687 - MGP_C3HHeJ_P0068814 Tnfrsf1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014287.1 MGP_C3HHeJ_G0012391.1 mouse_genomes_project 4 19359857 19360363 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100627.1 MGP_C3HHeJ_G0038821.1 mouse_genomes_project 4 52567121 52567252 + Gm24177 snoRNA snoRNA MGP_C3HHeJ_T0014613.1 MGP_C3HHeJ_G0012717.1 mouse_genomes_project 4 133784894 133785349 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067225.1 MGP_C3HHeJ_G0028416.1 mouse_genomes_project 4 121556826 121606584 - MGP_C3HHeJ_P0067225 Smap2 protein_coding protein_coding MGP_C3HHeJ_T0067226.1 MGP_C3HHeJ_G0028416.1 mouse_genomes_project 4 121560394 121564213 - Smap2 protein_coding processed_transcript MGP_C3HHeJ_T0068383.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471103 138483599 + MGP_C3HHeJ_P0068383 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068384.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471488 138542610 + MGP_C3HHeJ_P0068384 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068385.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471555 138542610 + MGP_C3HHeJ_P0068385 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068386.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471555 138507882 + MGP_C3HHeJ_P0068386 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068387.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138471576 138507882 + MGP_C3HHeJ_P0068387 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068388.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138500937 138507882 + MGP_C3HHeJ_P0068388 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068389.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138502177 138505796 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0068390.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138503621 138517123 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0068391.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138505796 138517557 + MGP_C3HHeJ_P0068391 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068392.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138507753 138542616 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0068393.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138517296 138539342 + MGP_C3HHeJ_P0068393 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068394.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138517367 138521392 + MGP_C3HHeJ_P0068394 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068395.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138517771 138537011 + MGP_C3HHeJ_P0068395 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068396.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138528328 138539335 + MGP_C3HHeJ_P0068396 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068397.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138528413 138536845 + MGP_C3HHeJ_P0068397 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068398.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138534295 138540418 + MGP_C3HHeJ_P0068398 Usp48 protein_coding protein_coding MGP_C3HHeJ_T0068399.1 MGP_C3HHeJ_G0028682.1 mouse_genomes_project 4 138541476 138542609 + Usp48 protein_coding processed_transcript MGP_C3HHeJ_T0099406.1 MGP_C3HHeJ_G0037600.1 mouse_genomes_project 4 146292732 146292898 - Gm25938 snRNA snRNA MGP_C3HHeJ_T0065059.1 MGP_C3HHeJ_G0027914.1 mouse_genomes_project 4 41767327 41768606 - MGP_C3HHeJ_P0065059 Msmp protein_coding protein_coding MGP_C3HHeJ_T0067240.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716818 122739724 + MGP_C3HHeJ_P0067240 Ppt1 protein_coding protein_coding MGP_C3HHeJ_T0067241.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716822 122729625 + MGP_C3HHeJ_P0067241 Ppt1 protein_coding protein_coding MGP_C3HHeJ_T0067242.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716826 122739821 + MGP_C3HHeJ_P0067242 Ppt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0067243.1 MGP_C3HHeJ_G0028424.1 mouse_genomes_project 4 122716830 122730908 + MGP_C3HHeJ_P0067243 Ppt1 protein_coding protein_coding MGP_C3HHeJ_T0007841.1 MGP_C3HHeJ_G0006404.1 mouse_genomes_project 4 107899416 107905825 + 4933424M12Rik lincRNA lincRNA MGP_C3HHeJ_T0007842.1 MGP_C3HHeJ_G0006404.1 mouse_genomes_project 4 107903520 107905825 + 4933424M12Rik lincRNA lincRNA MGP_C3HHeJ_T0064412.1 MGP_C3HHeJ_G0027767.1 mouse_genomes_project 4 11678825 11699165 - MGP_C3HHeJ_P0064412 protein_coding protein_coding MGP_C3HHeJ_T0064413.1 MGP_C3HHeJ_G0027767.1 mouse_genomes_project 4 11680333 11698973 - MGP_C3HHeJ_P0064413 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010563.1 MGP_C3HHeJ_G0008696.1 mouse_genomes_project 4 142477891 142477968 + Gm25690 miRNA miRNA MGP_C3HHeJ_T0102000.1 MGP_C3HHeJ_G0039965.1 mouse_genomes_project 4 96002147 96031382 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014320.1 MGP_C3HHeJ_G0012424.1 mouse_genomes_project 4 27559063 27559598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004397.1 MGP_C3HHeJ_G0003828.1 mouse_genomes_project 4 87653131 87654632 + Gm12631 antisense antisense MGP_C3HHeJ_T0067525.1 MGP_C3HHeJ_G0028489.1 mouse_genomes_project 4 127255611 127261531 + MGP_C3HHeJ_P0067525 Tmem35b protein_coding protein_coding MGP_C3HHeJ_T0067526.1 MGP_C3HHeJ_G0028489.1 mouse_genomes_project 4 127257949 127261531 + MGP_C3HHeJ_P0067526 Tmem35b protein_coding protein_coding MGP_C3HHeJ_T0010485.1 MGP_C3HHeJ_G0008618.1 mouse_genomes_project 4 7582068 7582199 - Mir3471-1 miRNA miRNA MGP_C3HHeJ_T0065964.1 MGP_C3HHeJ_G0028140.1 mouse_genomes_project 4 91925110 91926028 - MGP_C3HHeJ_P0065964 Gm12666 protein_coding protein_coding MGP_C3HHeJ_T0014632.1 MGP_C3HHeJ_G0012736.1 mouse_genomes_project 4 140136860 140137470 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099396.1 MGP_C3HHeJ_G0037590.1 mouse_genomes_project 4 133008838 133008942 - Gm24762 snRNA snRNA MGP_C3HHeJ_T0064960.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41554313 41601096 + MGP_C3HHeJ_P0064960 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064961.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41554391 41588807 + MGP_C3HHeJ_P0064961 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064962.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41554404 41590201 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064963.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41555777 41588851 + MGP_C3HHeJ_P0064963 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064964.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41555838 41588766 + MGP_C3HHeJ_P0064964 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064965.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41556610 41595927 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064966.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41556663 41588904 + MGP_C3HHeJ_P0064966 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064967.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41574323 41601081 + Rusc2 protein_coding retained_intron MGP_C3HHeJ_T0064968.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41574338 41588750 + MGP_C3HHeJ_P0064968 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064969.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41579517 41601096 + MGP_C3HHeJ_P0064969 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064970.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41579584 41596463 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064971.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41579639 41589190 + MGP_C3HHeJ_P0064971 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064972.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41580419 41595810 + MGP_C3HHeJ_P0064972 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064973.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41588706 41600657 + MGP_C3HHeJ_P0064973 Rusc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0064974.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41588706 41601096 + MGP_C3HHeJ_P0064974 Rusc2 protein_coding protein_coding MGP_C3HHeJ_T0064975.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41590448 41600373 + Rusc2 protein_coding processed_transcript MGP_C3HHeJ_T0064976.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41596499 41598381 + Rusc2 protein_coding retained_intron MGP_C3HHeJ_T0064977.1 MGP_C3HHeJ_G0027901.1 mouse_genomes_project 4 41597598 41598019 + Rusc2 protein_coding retained_intron MGP_C3HHeJ_T0067820.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253527 131280376 + MGP_C3HHeJ_P0067820 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067821.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253710 131270198 + MGP_C3HHeJ_P0067821 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067822.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253716 131266575 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067823.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253722 131270201 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067824.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253723 131267874 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067825.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131253760 131276949 + MGP_C3HHeJ_P0067825 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067826.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131255870 131270219 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067827.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131256068 131268361 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0067828.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131256351 131278361 + MGP_C3HHeJ_P0067828 Laptm5 protein_coding protein_coding MGP_C3HHeJ_T0067829.1 MGP_C3HHeJ_G0028551.1 mouse_genomes_project 4 131273554 131277233 + Laptm5 protein_coding processed_transcript MGP_C3HHeJ_T0011459.1 MGP_C3HHeJ_G0009592.1 mouse_genomes_project 4 8744211 8744527 + Gm22477 misc_RNA misc_RNA MGP_C3HHeJ_T0014458.1 MGP_C3HHeJ_G0012562.1 mouse_genomes_project 4 82003331 82003598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0067801.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130673215 130706371 + MGP_C3HHeJ_P0067801 Snrnp40 protein_coding protein_coding MGP_C3HHeJ_T0067802.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130673277 130691920 + Snrnp40 protein_coding processed_transcript MGP_C3HHeJ_T0067803.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130675710 130678516 + Snrnp40 protein_coding processed_transcript MGP_C3HHeJ_T0067804.1 MGP_C3HHeJ_G0028547.1 mouse_genomes_project 4 130701365 130704973 + Snrnp40 protein_coding processed_transcript MGP_C3HHeJ_T0065052.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41762828 41772448 + MGP_C3HHeJ_P0065052 Rgp1 protein_coding protein_coding MGP_C3HHeJ_T0065053.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41762848 41772446 + MGP_C3HHeJ_P0065053 Rgp1 protein_coding protein_coding MGP_C3HHeJ_T0065054.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763067 41765035 + Rgp1 protein_coding processed_transcript MGP_C3HHeJ_T0065055.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763071 41767242 + MGP_C3HHeJ_P0065055 Rgp1 protein_coding protein_coding MGP_C3HHeJ_T0065056.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763096 41763734 + Rgp1 protein_coding retained_intron MGP_C3HHeJ_T0065057.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41763848 41765031 + Rgp1 protein_coding retained_intron MGP_C3HHeJ_T0065058.1 MGP_C3HHeJ_G0027913.1 mouse_genomes_project 4 41765325 41765832 + Rgp1 protein_coding retained_intron MGP_C3HHeJ_T0065797.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806851 82849297 + MGP_C3HHeJ_P0065797 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065798.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806851 82839606 + MGP_C3HHeJ_P0065798 Snapc3 protein_coding protein_coding MGP_C3HHeJ_T0065799.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806858 82832799 + MGP_C3HHeJ_P0065799 Snapc3 protein_coding protein_coding MGP_C3HHeJ_T0065800.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806871 82840299 + MGP_C3HHeJ_P0065800 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065801.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806871 82854670 + MGP_C3HHeJ_P0065801 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065802.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82806876 82855127 + MGP_C3HHeJ_P0065802 Snapc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0065803.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82840071 82854617 + Snapc3 protein_coding processed_transcript MGP_C3HHeJ_T0065804.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82840219 82853578 + Snapc3 protein_coding processed_transcript MGP_C3HHeJ_T0065811.1 MGP_C3HHeJ_G0028099.1 mouse_genomes_project 4 82851426 82854662 + Snapc3 protein_coding retained_intron MGP_C3HHeJ_T0068364.1 MGP_C3HHeJ_G0028670.1 mouse_genomes_project 4 137680181 137686102 - MGP_C3HHeJ_P0068364 C1qb protein_coding protein_coding MGP_C3HHeJ_T0064455.1 MGP_C3HHeJ_G0027787.1 mouse_genomes_project 4 17139758 17816525 - MGP_C3HHeJ_P0064455 Nkain3 protein_coding protein_coding MGP_C3HHeJ_T0064456.1 MGP_C3HHeJ_G0027787.1 mouse_genomes_project 4 17265676 17816820 - MGP_C3HHeJ_P0064456 Nkain3 protein_coding protein_coding MGP_C3HHeJ_T0017860.1 MGP_C3HHeJ_G0015332.1 mouse_genomes_project 4 119490795 119520279 + Gm12861 processed_transcript processed_transcript MGP_C3HHeJ_T0065573.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61201389 61232874 - Fkbp15 protein_coding processed_transcript MGP_C3HHeJ_T0065574.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61201389 61265321 - MGP_C3HHeJ_P0065574 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065575.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61210530 61265399 - MGP_C3HHeJ_P0065575 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065576.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61217884 61265345 - MGP_C3HHeJ_P0065576 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065577.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61219900 61265385 - MGP_C3HHeJ_P0065577 Fkbp15 protein_coding protein_coding MGP_C3HHeJ_T0065578.1 MGP_C3HHeJ_G0028047.1 mouse_genomes_project 4 61248333 61265320 - Fkbp15 protein_coding processed_transcript MGP_C3HHeJ_T0100636.1 MGP_C3HHeJ_G0038830.1 mouse_genomes_project 4 61860575 61860709 + Gm25391 snoRNA snoRNA MGP_C3HHeJ_T0010546.1 MGP_C3HHeJ_G0008679.1 mouse_genomes_project 4 133880965 133881054 + Mir5122 miRNA miRNA MGP_C3HHeJ_T0068846.1 MGP_C3HHeJ_G0028815.1 mouse_genomes_project 4 149930418 149931778 + MGP_C3HHeJ_P0068846 Nppa protein_coding protein_coding MGP_C3HHeJ_T0071328.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51813591 51862862 + Zcchc4 protein_coding processed_transcript MGP_C3HHeJ_T0071329.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821212 51862605 + MGP_C3HHeJ_P0071329 Zcchc4 protein_coding protein_coding MGP_C3HHeJ_T0071330.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821212 51863699 + MGP_C3HHeJ_P0071330 Zcchc4 protein_coding protein_coding MGP_C3HHeJ_T0071331.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821244 51838324 + Zcchc4 protein_coding retained_intron MGP_C3HHeJ_T0071332.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821274 51834255 + MGP_C3HHeJ_P0071332 Zcchc4 protein_coding protein_coding MGP_C3HHeJ_T0071333.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51821280 51834287 + Zcchc4 protein_coding processed_transcript MGP_C3HHeJ_T0071334.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51836185 51858218 + Zcchc4 protein_coding processed_transcript MGP_C3HHeJ_T0071335.1 MGP_C3HHeJ_G0029249.1 mouse_genomes_project 5 51842267 51854943 + Zcchc4 protein_coding retained_intron MGP_C3HHeJ_T0001585.1 MGP_C3HHeJ_G0001511.1 mouse_genomes_project 5 59323786 59326412 - TEC TEC MGP_C3HHeJ_T0001569.1 MGP_C3HHeJ_G0001495.1 mouse_genomes_project 5 56897465 56897620 + TEC TEC MGP_C3HHeJ_T0014837.1 MGP_C3HHeJ_G0012941.1 mouse_genomes_project 5 71966184 71966655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074361.1 MGP_C3HHeJ_G0029841.1 mouse_genomes_project 5 133588169 133596312 - A330070K13Rik protein_coding antisense MGP_C3HHeJ_T0074362.1 MGP_C3HHeJ_G0029841.1 mouse_genomes_project 5 133588242 133596313 - MGP_C3HHeJ_P0074362 A330070K13Rik protein_coding protein_coding MGP_C3HHeJ_T0004606.1 MGP_C3HHeJ_G0003983.1 mouse_genomes_project 5 42138536 42146444 - Gm15866 antisense antisense MGP_C3HHeJ_T0004607.1 MGP_C3HHeJ_G0003983.1 mouse_genomes_project 5 42145959 42190120 - Gm15866 antisense antisense MGP_C3HHeJ_T0001644.1 MGP_C3HHeJ_G0001569.1 mouse_genomes_project 5 69283658 69283984 - TEC TEC MGP_C3HHeJ_T0098496.1 MGP_C3HHeJ_G0036701.1 mouse_genomes_project 5 93553514 93554752 + Gm20500 sense_intronic sense_intronic MGP_C3HHeJ_T0001777.1 MGP_C3HHeJ_G0001701.1 mouse_genomes_project 5 125725181 125731768 + TEC TEC MGP_C3HHeJ_T0073164.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116314152 116323072 + MGP_C3HHeJ_P0073164 Ung protein_coding protein_coding MGP_C3HHeJ_T0073165.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116314995 116322136 + MGP_C3HHeJ_P0073165 Ung protein_coding protein_coding MGP_C3HHeJ_T0073166.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116314995 116322138 + MGP_C3HHeJ_P0073166 Ung protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073167.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116315773 116322063 + MGP_C3HHeJ_P0073167 Ung protein_coding protein_coding MGP_C3HHeJ_T0073168.1 MGP_C3HHeJ_G0029628.1 mouse_genomes_project 5 116315845 116318934 + Ung protein_coding retained_intron MGP_C3HHeJ_T0102067.1 MGP_C3HHeJ_G0040032.1 mouse_genomes_project 5 156561196 156561284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102059.1 MGP_C3HHeJ_G0040024.1 mouse_genomes_project 5 149238189 149240180 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008168.1 MGP_C3HHeJ_G0006647.1 mouse_genomes_project 5 107962459 107964905 + Gm32921 lincRNA lincRNA MGP_C3HHeJ_T0008323.1 MGP_C3HHeJ_G0006744.1 mouse_genomes_project 5 136831902 136889722 - Gm42624 lincRNA lincRNA MGP_C3HHeJ_T0070141.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22549531 22560674 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070142.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22551336 22582638 - MGP_C3HHeJ_P0070142 Smarcd3 protein_coding protein_coding MGP_C3HHeJ_T0070143.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22551336 22560710 - MGP_C3HHeJ_P0070143 Smarcd3 protein_coding protein_coding MGP_C3HHeJ_T0070145.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22553409 22555564 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070146.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22553878 22560633 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070147.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22554449 22557657 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070148.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22554460 22555704 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070149.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22554581 22560598 - Smarcd3 protein_coding retained_intron MGP_C3HHeJ_T0070150.1 MGP_C3HHeJ_G0029049.1 mouse_genomes_project 5 22580773 22581384 - Smarcd3 protein_coding processed_transcript MGP_C3HHeJ_T0001623.1 MGP_C3HHeJ_G0001548.1 mouse_genomes_project 5 66315370 66317890 + TEC TEC MGP_C3HHeJ_T0001506.1 MGP_C3HHeJ_G0001433.1 mouse_genomes_project 5 43318302 43325481 - TEC TEC MGP_C3HHeJ_T0072618.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106514677 106583079 - MGP_C3HHeJ_P0072618 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072622.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106582223 106632318 - MGP_C3HHeJ_P0072622 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072623.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106604605 106630109 - MGP_C3HHeJ_P0072623 Gbp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072624.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106604605 106630109 - MGP_C3HHeJ_P0072624 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072625.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106611814 106630067 - MGP_C3HHeJ_P0072625 Gbp4 protein_coding protein_coding MGP_C3HHeJ_T0072626.1 MGP_C3HHeJ_G0029519.1 mouse_genomes_project 5 106622727 106630074 - Gbp4 protein_coding retained_intron MGP_C3HHeJ_T0070787.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32576308 32577762 - Mxd4 protein_coding processed_transcript MGP_C3HHeJ_T0070788.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32576312 32590122 - MGP_C3HHeJ_P0070788 Mxd4 protein_coding protein_coding MGP_C3HHeJ_T0070789.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32578991 32590132 - MGP_C3HHeJ_P0070789 Mxd4 protein_coding protein_coding MGP_C3HHeJ_T0070790.1 MGP_C3HHeJ_G0029159.1 mouse_genomes_project 5 32582157 32586785 - Mxd4 protein_coding retained_intron MGP_C3HHeJ_T0074794.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905495 140917474 - MGP_C3HHeJ_P0074794 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074795.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905502 140917466 - MGP_C3HHeJ_P0074795 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074796.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905506 140917466 - MGP_C3HHeJ_P0074796 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074797.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905508 140917227 - MGP_C3HHeJ_P0074797 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074798.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905516 140909437 - MGP_C3HHeJ_P0074798 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074799.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905778 140907217 - MGP_C3HHeJ_P0074799 Srrt protein_coding protein_coding MGP_C3HHeJ_T0074800.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140905809 140906726 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074801.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140906027 140907009 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074802.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140906070 140906645 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074803.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140906258 140907359 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074804.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140907415 140908339 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074805.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140907623 140910110 - MGP_C3HHeJ_P0074805 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074806.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140907623 140909801 - MGP_C3HHeJ_P0074806 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074807.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140908050 140909678 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074808.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140909377 140917279 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074809.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140909664 140910523 - Srrt protein_coding retained_intron MGP_C3HHeJ_T0074810.1 MGP_C3HHeJ_G0029916.1 mouse_genomes_project 5 140912445 140917440 - MGP_C3HHeJ_P0074810 Srrt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001568.1 MGP_C3HHeJ_G0001494.1 mouse_genomes_project 5 56724206 56726862 + TEC TEC MGP_C3HHeJ_T0001679.1 MGP_C3HHeJ_G0001603.1 mouse_genomes_project 5 92739190 92740152 - TEC TEC MGP_C3HHeJ_T0014853.1 MGP_C3HHeJ_G0012957.1 mouse_genomes_project 5 77301639 77302212 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069945.1 MGP_C3HHeJ_G0029012.1 mouse_genomes_project 5 19078719 19084435 + MGP_C3HHeJ_P0069945 Fgl2 protein_coding protein_coding MGP_C3HHeJ_T0004651.1 MGP_C3HHeJ_G0004019.1 mouse_genomes_project 5 77475908 77483006 + Gm43261 antisense antisense MGP_C3HHeJ_T0070087.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22370035 22374781 + MGP_C3HHeJ_P0070087 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070088.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22370051 22377318 + Slc4a2 protein_coding processed_transcript MGP_C3HHeJ_T0070089.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22370057 22377051 + MGP_C3HHeJ_P0070089 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070090.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22372389 22389464 + MGP_C3HHeJ_P0070090 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070091.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22373999 22377021 + MGP_C3HHeJ_P0070091 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070092.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22375376 22389461 + MGP_C3HHeJ_P0070092 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070093.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22375431 22377007 + Slc4a2 protein_coding processed_transcript MGP_C3HHeJ_T0070094.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22375591 22389461 + MGP_C3HHeJ_P0070094 Slc4a2 protein_coding protein_coding MGP_C3HHeJ_T0070095.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22376186 22376948 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070096.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22378504 22381521 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070097.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22382713 22383656 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070098.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22383928 22387770 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0070101.1 MGP_C3HHeJ_G0029040.1 mouse_genomes_project 5 22388259 22389086 + Slc4a2 protein_coding retained_intron MGP_C3HHeJ_T0014691.1 MGP_C3HHeJ_G0012795.1 mouse_genomes_project 5 13860785 13861569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001752.1 MGP_C3HHeJ_G0001676.1 mouse_genomes_project 5 121070733 121071995 - TEC TEC MGP_C3HHeJ_T0072613.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106503739 106599258 - Gbp9 protein_coding retained_intron MGP_C3HHeJ_T0072619.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106572173 106599258 - MGP_C3HHeJ_P0072619 Gbp9 protein_coding protein_coding MGP_C3HHeJ_T0072620.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106573026 106630062 - MGP_C3HHeJ_P0072620 Gbp9 protein_coding protein_coding MGP_C3HHeJ_T0072621.1 MGP_C3HHeJ_G0029517.1 mouse_genomes_project 5 106573863 106576233 - Gbp9 protein_coding processed_transcript MGP_C3HHeJ_T0007995.1 MGP_C3HHeJ_G0006517.1 mouse_genomes_project 5 28026722 28031866 - Gm42450 lincRNA lincRNA MGP_C3HHeJ_T0100726.1 MGP_C3HHeJ_G0038920.1 mouse_genomes_project 5 112665893 112666026 - Gm26079 snoRNA snoRNA MGP_C3HHeJ_T0008297.1 MGP_C3HHeJ_G0006728.1 mouse_genomes_project 5 129823674 129826649 - Gm43754 lincRNA lincRNA MGP_C3HHeJ_T0070388.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29092921 29102739 + MGP_C3HHeJ_P0070388 Khk protein_coding protein_coding MGP_C3HHeJ_T0070389.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29093078 29102537 + MGP_C3HHeJ_P0070389 Khk protein_coding protein_coding MGP_C3HHeJ_T0070390.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29093321 29102680 + MGP_C3HHeJ_P0070390 Khk protein_coding protein_coding MGP_C3HHeJ_T0070391.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29093346 29102284 + MGP_C3HHeJ_P0070391 Khk protein_coding protein_coding MGP_C3HHeJ_T0070392.1 MGP_C3HHeJ_G0029099.1 mouse_genomes_project 5 29102104 29102736 + Khk protein_coding retained_intron MGP_C3HHeJ_T0011736.1 MGP_C3HHeJ_G0009845.1 mouse_genomes_project 5 93170287 93177257 - MGP_C3HHeJ_P0011736 Cxcl11 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011737.1 MGP_C3HHeJ_G0009845.1 mouse_genomes_project 5 93170290 93174013 - MGP_C3HHeJ_P0011737 Cxcl11 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0074596.1 MGP_C3HHeJ_G0029878.1 mouse_genomes_project 5 139024831 139029460 - MGP_C3HHeJ_P0074596 Ccl26 protein_coding protein_coding MGP_C3HHeJ_T0014792.1 MGP_C3HHeJ_G0012896.1 mouse_genomes_project 5 49895386 49895951 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100697.1 MGP_C3HHeJ_G0038891.1 mouse_genomes_project 5 56372494 56372617 + Gm24902 snoRNA snoRNA MGP_C3HHeJ_T0099452.1 MGP_C3HHeJ_G0037646.1 mouse_genomes_project 5 80461666 80461773 + Gm24304 snRNA snRNA MGP_C3HHeJ_T0073496.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120678807 120735648 - MGP_C3HHeJ_P0073496 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073497.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120678813 120735903 - MGP_C3HHeJ_P0073497 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073498.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120681702 120720065 - Rnft2 protein_coding retained_intron MGP_C3HHeJ_T0073499.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120682184 120692166 - MGP_C3HHeJ_P0073499 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073500.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120724935 120735781 - MGP_C3HHeJ_P0073500 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0073501.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120727706 120733700 - Rnft2 protein_coding retained_intron MGP_C3HHeJ_T0073502.1 MGP_C3HHeJ_G0029690.1 mouse_genomes_project 5 120728284 120735779 - MGP_C3HHeJ_P0073502 Rnft2 protein_coding protein_coding MGP_C3HHeJ_T0001424.1 MGP_C3HHeJ_G0001354.1 mouse_genomes_project 5 12058187 12060860 + TEC TEC MGP_C3HHeJ_T0098505.1 MGP_C3HHeJ_G0036710.1 mouse_genomes_project 5 132939402 132940742 + Gm15903 sense_intronic sense_intronic MGP_C3HHeJ_T0098506.1 MGP_C3HHeJ_G0036710.1 mouse_genomes_project 5 132940528 132944036 + Gm15903 sense_intronic sense_intronic MGP_C3HHeJ_T0008138.1 MGP_C3HHeJ_G0006628.1 mouse_genomes_project 5 100945808 100968908 - Gm43248 lincRNA lincRNA MGP_C3HHeJ_T0008139.1 MGP_C3HHeJ_G0006628.1 mouse_genomes_project 5 100957364 100968446 - Gm43248 lincRNA lincRNA MGP_C3HHeJ_T0100688.1 MGP_C3HHeJ_G0038882.1 mouse_genomes_project 5 16454011 16454139 + Gm23822 snoRNA snoRNA MGP_C3HHeJ_T0001431.1 MGP_C3HHeJ_G0001361.1 mouse_genomes_project 5 14140152 14141643 + TEC TEC MGP_C3HHeJ_T0001422.1 MGP_C3HHeJ_G0001352.1 mouse_genomes_project 5 12014583 12017867 + TEC TEC MGP_C3HHeJ_T0069818.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296770 6341139 - MGP_C3HHeJ_P0069818 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069819.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296774 6341169 - MGP_C3HHeJ_P0069819 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069820.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296775 6341172 - MGP_C3HHeJ_P0069820 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069821.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296775 6341179 - MGP_C3HHeJ_P0069821 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069822.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296779 6341163 - MGP_C3HHeJ_P0069822 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069823.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296779 6331678 - MGP_C3HHeJ_P0069823 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069824.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6296972 6341091 - MGP_C3HHeJ_P0069824 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069825.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6297695 6298634 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069826.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6297931 6330450 - MGP_C3HHeJ_P0069826 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069827.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6299356 6304480 - MGP_C3HHeJ_P0069827 Dmtf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069828.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6299960 6341163 - Dmtf1 protein_coding processed_transcript MGP_C3HHeJ_T0069829.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6307269 6341157 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069830.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6309190 6341136 - MGP_C3HHeJ_P0069830 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069831.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6310461 6330575 - MGP_C3HHeJ_P0069831 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0069832.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6318627 6341154 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069833.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6324897 6341169 - Dmtf1 protein_coding retained_intron MGP_C3HHeJ_T0069834.1 MGP_C3HHeJ_G0028991.1 mouse_genomes_project 5 6328963 6331468 - MGP_C3HHeJ_P0069834 Dmtf1 protein_coding protein_coding MGP_C3HHeJ_T0070976.1 MGP_C3HHeJ_G0029187.1 mouse_genomes_project 5 34947268 34956274 + MGP_C3HHeJ_P0070976 Grpel1 protein_coding protein_coding MGP_C3HHeJ_T0070921.1 MGP_C3HHeJ_G0029178.1 mouse_genomes_project 5 33958538 33983050 - MGP_C3HHeJ_P0070921 Cpz protein_coding protein_coding MGP_C3HHeJ_T0070922.1 MGP_C3HHeJ_G0029178.1 mouse_genomes_project 5 33975064 33982926 - MGP_C3HHeJ_P0070922 Cpz protein_coding protein_coding MGP_C3HHeJ_T0014674.1 MGP_C3HHeJ_G0012778.1 mouse_genomes_project 5 5052104 5052396 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070045.1 MGP_C3HHeJ_G0029030.1 mouse_genomes_project 5 21742845 21748658 - MGP_C3HHeJ_P0070045 Tomm7 protein_coding protein_coding MGP_C3HHeJ_T0001552.1 MGP_C3HHeJ_G0001478.1 mouse_genomes_project 5 50489119 50491050 + TEC TEC MGP_C3HHeJ_T0098499.1 MGP_C3HHeJ_G0036704.1 mouse_genomes_project 5 107160868 107162193 + C230066G23Rik sense_intronic sense_intronic MGP_C3HHeJ_T0014993.1 MGP_C3HHeJ_G0013097.1 mouse_genomes_project 5 141708309 141708809 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075497.1 MGP_C3HHeJ_G0030062.1 mouse_genomes_project 5 149548240 149554205 + MGP_C3HHeJ_P0075497 protein_coding protein_coding MGP_C3HHeJ_T0075498.1 MGP_C3HHeJ_G0030062.1 mouse_genomes_project 5 149548346 149561731 + MGP_C3HHeJ_P0075498 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075499.1 MGP_C3HHeJ_G0030062.1 mouse_genomes_project 5 149551094 149561849 + MGP_C3HHeJ_P0075499 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008363.1 MGP_C3HHeJ_G0006778.1 mouse_genomes_project 5 153461207 153462507 + 2210417A02Rik lincRNA lincRNA MGP_C3HHeJ_T0071542.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614482 65700434 - MGP_C3HHeJ_P0071542 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071543.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614482 65776315 - MGP_C3HHeJ_P0071543 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071544.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614489 65683275 - MGP_C3HHeJ_P0071544 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071545.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65614490 65753944 - MGP_C3HHeJ_P0071545 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071546.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65616536 65753098 - MGP_C3HHeJ_P0071546 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071547.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65616536 65753098 - MGP_C3HHeJ_P0071547 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071548.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65616916 65683374 - MGP_C3HHeJ_P0071548 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071549.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65626450 65752976 - Rbm47 protein_coding retained_intron MGP_C3HHeJ_T0071550.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65627666 65655674 - MGP_C3HHeJ_P0071550 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071551.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65627909 65684265 - Rbm47 protein_coding processed_transcript MGP_C3HHeJ_T0071552.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65628101 65683259 - MGP_C3HHeJ_P0071552 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071553.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65628121 65753343 - MGP_C3HHeJ_P0071553 Rbm47 protein_coding protein_coding MGP_C3HHeJ_T0071554.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65647378 65753808 - Rbm47 protein_coding processed_transcript MGP_C3HHeJ_T0071555.1 MGP_C3HHeJ_G0029287.1 mouse_genomes_project 5 65647493 65753802 - Rbm47 protein_coding processed_transcript MGP_C3HHeJ_T0074565.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138622997 138684005 + MGP_C3HHeJ_P0074565 Baz1b protein_coding protein_coding MGP_C3HHeJ_T0074566.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138633846 138636864 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0074567.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138642404 138649130 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0074568.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138645677 138655327 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0074569.1 MGP_C3HHeJ_G0029871.1 mouse_genomes_project 5 138680262 138682058 + Baz1b protein_coding retained_intron MGP_C3HHeJ_T0102064.1 MGP_C3HHeJ_G0040029.1 mouse_genomes_project 5 156333361 156358659 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0070724.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107677 32115835 + MGP_C3HHeJ_P0070724 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070725.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107727 32123066 + MGP_C3HHeJ_P0070725 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070726.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107727 32123065 + MGP_C3HHeJ_P0070726 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070727.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107727 32123066 + MGP_C3HHeJ_P0070727 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070728.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107794 32123061 + MGP_C3HHeJ_P0070728 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070729.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32107801 32121605 + MGP_C3HHeJ_P0070729 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070730.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108309 32123066 + MGP_C3HHeJ_P0070730 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070731.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108309 32123066 + MGP_C3HHeJ_P0070731 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070732.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108447 32116004 + MGP_C3HHeJ_P0070732 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070733.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32108823 32118788 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0070734.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32109775 32115848 + MGP_C3HHeJ_P0070734 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070735.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32115735 32118741 + MGP_C3HHeJ_P0070735 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070736.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32115961 32119281 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0070737.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32116218 32119759 + MGP_C3HHeJ_P0070737 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070738.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32119249 32120850 + MGP_C3HHeJ_P0070738 Fgfr3 protein_coding protein_coding MGP_C3HHeJ_T0070739.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32119689 32120911 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0070740.1 MGP_C3HHeJ_G0029151.1 mouse_genomes_project 5 32120602 32121562 + Fgfr3 protein_coding retained_intron MGP_C3HHeJ_T0001713.1 MGP_C3HHeJ_G0001637.1 mouse_genomes_project 5 108831868 108833953 - TEC TEC MGP_C3HHeJ_T0001464.1 MGP_C3HHeJ_G0001391.1 mouse_genomes_project 5 30735338 30737583 + TEC TEC MGP_C3HHeJ_T0071370.1 MGP_C3HHeJ_G0029255.1 mouse_genomes_project 5 52819553 52827242 - MGP_C3HHeJ_P0071370 Cckar protein_coding protein_coding MGP_C3HHeJ_T0071371.1 MGP_C3HHeJ_G0029255.1 mouse_genomes_project 5 52826232 52827445 - Cckar protein_coding processed_transcript MGP_C3HHeJ_T0008172.1 MGP_C3HHeJ_G0006651.1 mouse_genomes_project 5 108111929 108117140 - Gm26872 lincRNA lincRNA MGP_C3HHeJ_T0073047.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114474137 114635664 - MGP_C3HHeJ_P0073047 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0073048.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114474142 114635771 - MGP_C3HHeJ_P0073048 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0073049.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114474151 114635981 - MGP_C3HHeJ_P0073049 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0073050.1 MGP_C3HHeJ_G0029605.1 mouse_genomes_project 5 114476805 114635973 - MGP_C3HHeJ_P0073050 Sez6l protein_coding protein_coding MGP_C3HHeJ_T0004726.1 MGP_C3HHeJ_G0004071.1 mouse_genomes_project 5 119540910 119544398 + 9530046B11Rik antisense antisense MGP_C3HHeJ_T0072062.1 MGP_C3HHeJ_G0029383.1 mouse_genomes_project 5 88015658 88039183 - MGP_C3HHeJ_P0072062 Ugt2a2 protein_coding protein_coding MGP_C3HHeJ_T0072064.1 MGP_C3HHeJ_G0029383.1 mouse_genomes_project 5 88016527 88039185 - MGP_C3HHeJ_P0072064 Ugt2a2 protein_coding protein_coding MGP_C3HHeJ_T0014943.1 MGP_C3HHeJ_G0013047.1 mouse_genomes_project 5 112872294 112872965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014928.1 MGP_C3HHeJ_G0013032.1 mouse_genomes_project 5 109882598 109884280 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101211.1 MGP_C3HHeJ_G0039346.1 mouse_genomes_project 5 20290203 20291040 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0014728.1 MGP_C3HHeJ_G0012832.1 mouse_genomes_project 5 22174937 22175576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070497.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29394656 29399013 - MGP_C3HHeJ_P0070497 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070498.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29394658 29398752 - MGP_C3HHeJ_P0070498 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070499.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395175 29397471 - Zfp513 protein_coding processed_transcript MGP_C3HHeJ_T0070500.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395456 29395962 - MGP_C3HHeJ_P0070500 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070501.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395556 29397472 - Zfp513 protein_coding processed_transcript MGP_C3HHeJ_T0070502.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29395664 29397472 - Zfp513 protein_coding processed_transcript MGP_C3HHeJ_T0070503.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29397378 29398925 - MGP_C3HHeJ_P0070503 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070504.1 MGP_C3HHeJ_G0029115.1 mouse_genomes_project 5 29397465 29398935 - MGP_C3HHeJ_P0070504 Zfp513 protein_coding protein_coding MGP_C3HHeJ_T0070318.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28509912 28610041 - MGP_C3HHeJ_P0070318 Otof protein_coding protein_coding MGP_C3HHeJ_T0070319.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28509912 28610011 - MGP_C3HHeJ_P0070319 Otof protein_coding protein_coding MGP_C3HHeJ_T0070320.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28509918 28610041 - Otof protein_coding retained_intron MGP_C3HHeJ_T0070321.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28510145 28609968 - Otof protein_coding retained_intron MGP_C3HHeJ_T0070322.1 MGP_C3HHeJ_G0029087.1 mouse_genomes_project 5 28550964 28554117 - Otof protein_coding retained_intron MGP_C3HHeJ_T0008235.1 MGP_C3HHeJ_G0006687.1 mouse_genomes_project 5 117971857 117972625 - 1110006O24Rik lincRNA lincRNA MGP_C3HHeJ_T0102045.1 MGP_C3HHeJ_G0040010.1 mouse_genomes_project 5 95711269 95714333 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014844.1 MGP_C3HHeJ_G0012948.1 mouse_genomes_project 5 75044330 75047301 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010648.1 MGP_C3HHeJ_G0008781.1 mouse_genomes_project 5 143310026 143310122 - Mir339 miRNA miRNA MGP_C3HHeJ_T0101220.1 MGP_C3HHeJ_G0039353.1 mouse_genomes_project 5 49635499 49638341 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099447.1 MGP_C3HHeJ_G0037641.1 mouse_genomes_project 5 72110499 72110597 - Gm25768 snRNA snRNA MGP_C3HHeJ_T0075366.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102760 148128252 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075367.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102760 148128252 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075368.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102760 148128252 + MGP_C3HHeJ_P0075368 Pms2 protein_coding protein_coding MGP_C3HHeJ_T0075369.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102786 148125494 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075370.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102786 148125732 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075371.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102795 148111990 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075372.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102800 148108345 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075373.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102821 148121199 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075374.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102821 148107882 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075375.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102853 148125448 + MGP_C3HHeJ_P0075375 Pms2 protein_coding protein_coding MGP_C3HHeJ_T0075376.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148102957 148107051 + Pms2 protein_coding processed_transcript MGP_C3HHeJ_T0075377.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148106908 148107503 + Pms2 protein_coding retained_intron MGP_C3HHeJ_T0075378.1 MGP_C3HHeJ_G0030037.1 mouse_genomes_project 5 148113910 148119808 + MGP_C3HHeJ_P0075378 Pms2 protein_coding protein_coding MGP_C3HHeJ_T0100690.1 MGP_C3HHeJ_G0038884.1 mouse_genomes_project 5 18806943 18807062 - Gm22490 snoRNA snoRNA MGP_C3HHeJ_T0099432.1 MGP_C3HHeJ_G0037626.1 mouse_genomes_project 5 32950405 32950510 + Gm22847 snRNA snRNA MGP_C3HHeJ_T0072192.1 MGP_C3HHeJ_G0029420.1 mouse_genomes_project 5 91201972 91218807 + MGP_C3HHeJ_P0072192 Alb protein_coding protein_coding MGP_C3HHeJ_T0072193.1 MGP_C3HHeJ_G0029420.1 mouse_genomes_project 5 91203394 91203798 + Alb protein_coding processed_transcript MGP_C3HHeJ_T0072194.1 MGP_C3HHeJ_G0029420.1 mouse_genomes_project 5 91203775 91216866 + Alb protein_coding processed_transcript MGP_C3HHeJ_T0071683.1 MGP_C3HHeJ_G0029309.1 mouse_genomes_project 5 71443694 71908248 + MGP_C3HHeJ_P0071683 Gabrb1 protein_coding protein_coding MGP_C3HHeJ_T0071684.1 MGP_C3HHeJ_G0029309.1 mouse_genomes_project 5 71491157 71941138 + MGP_C3HHeJ_P0071684 Gabrb1 protein_coding protein_coding MGP_C3HHeJ_T0100706.1 MGP_C3HHeJ_G0038900.1 mouse_genomes_project 5 68253246 68253373 - Gm23605 snoRNA snoRNA MGP_C3HHeJ_T0014684.1 MGP_C3HHeJ_G0012788.1 mouse_genomes_project 5 9803889 9804874 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070056.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22106775 22125699 + MGP_C3HHeJ_P0070056 Nupl2 protein_coding protein_coding MGP_C3HHeJ_T0070057.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22106812 22124523 + MGP_C3HHeJ_P0070057 Nupl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070058.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22109320 22111694 + Nupl2 protein_coding retained_intron MGP_C3HHeJ_T0070059.1 MGP_C3HHeJ_G0029033.1 mouse_genomes_project 5 22119677 22123118 + Nupl2 protein_coding retained_intron MGP_C3HHeJ_T0015018.1 MGP_C3HHeJ_G0013122.1 mouse_genomes_project 5 150356845 150357005 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102051.1 MGP_C3HHeJ_G0040016.1 mouse_genomes_project 5 111399711 111402955 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0074067.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127412885 127476510 - MGP_C3HHeJ_P0074067 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074068.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127412891 127476207 - MGP_C3HHeJ_P0074068 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074069.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127418712 127464619 - MGP_C3HHeJ_P0074069 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074070.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127421852 127432462 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074071.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127434887 127435861 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074072.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127439959 127440611 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074073.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127440607 127442119 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074074.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127442654 127476190 - MGP_C3HHeJ_P0074074 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074075.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127442670 127445957 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074076.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127442672 127476597 - MGP_C3HHeJ_P0074076 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074077.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127445622 127446631 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0074078.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127445622 127476553 - MGP_C3HHeJ_P0074078 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074079.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127448114 127476189 - MGP_C3HHeJ_P0074079 Sbno1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074080.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127449487 127455254 - MGP_C3HHeJ_P0074080 Sbno1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074081.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127456626 127476181 - MGP_C3HHeJ_P0074081 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074082.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127460217 127476165 - MGP_C3HHeJ_P0074082 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074083.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127460449 127469777 - MGP_C3HHeJ_P0074083 Sbno1 protein_coding protein_coding MGP_C3HHeJ_T0074084.1 MGP_C3HHeJ_G0029787.1 mouse_genomes_project 5 127474108 127476140 - Sbno1 protein_coding retained_intron MGP_C3HHeJ_T0014740.1 MGP_C3HHeJ_G0012844.1 mouse_genomes_project 5 25067044 25068726 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015004.1 MGP_C3HHeJ_G0013108.1 mouse_genomes_project 5 146778106 146778335 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100724.1 MGP_C3HHeJ_G0038918.1 mouse_genomes_project 5 109620134 109620266 + Gm26387 snoRNA snoRNA MGP_C3HHeJ_T0102048.1 MGP_C3HHeJ_G0040013.1 mouse_genomes_project 5 96987234 96989724 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0075380.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148127318 148140680 + Rsph10b protein_coding processed_transcript MGP_C3HHeJ_T0075381.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148127345 148184749 + MGP_C3HHeJ_P0075381 Rsph10b protein_coding protein_coding MGP_C3HHeJ_T0075382.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148131366 148184753 + MGP_C3HHeJ_P0075382 Rsph10b protein_coding unknown_likely_coding MGP_C3HHeJ_T0075383.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148131366 148140677 + MGP_C3HHeJ_P0075383 Rsph10b protein_coding protein_coding MGP_C3HHeJ_T0075384.1 MGP_C3HHeJ_G0030039.1 mouse_genomes_project 5 148176730 148184558 + Rsph10b protein_coding processed_transcript MGP_C3HHeJ_T0073336.1 MGP_C3HHeJ_G0029662.1 mouse_genomes_project 5 117646893 117649233 + MGP_C3HHeJ_P0073336 Triap1 protein_coding protein_coding MGP_C3HHeJ_T0004803.1 MGP_C3HHeJ_G0004124.1 mouse_genomes_project 5 144089923 144096316 + Gm16121 antisense antisense MGP_C3HHeJ_T0100717.1 MGP_C3HHeJ_G0038911.1 mouse_genomes_project 5 99734319 99734450 + Gm24279 snoRNA snoRNA MGP_C3HHeJ_T0070046.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21825020 21832585 - Fam126a protein_coding processed_transcript MGP_C3HHeJ_T0070047.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21825021 21967105 - MGP_C3HHeJ_P0070047 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070048.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21893084 21967483 - MGP_C3HHeJ_P0070048 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070049.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21896630 21967441 - MGP_C3HHeJ_P0070049 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070050.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21896632 21934264 - MGP_C3HHeJ_P0070050 Fam126a protein_coding protein_coding MGP_C3HHeJ_T0070051.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21915132 21918235 - Fam126a protein_coding retained_intron MGP_C3HHeJ_T0070052.1 MGP_C3HHeJ_G0029031.1 mouse_genomes_project 5 21922053 21967098 - Fam126a protein_coding processed_transcript MGP_C3HHeJ_T0008071.1 MGP_C3HHeJ_G0006573.1 mouse_genomes_project 5 64127533 64129565 - Gm42564 lincRNA lincRNA MGP_C3HHeJ_T0008403.1 MGP_C3HHeJ_G0006805.1 mouse_genomes_project 5 156603961 156612796 + lincRNA lincRNA MGP_C3HHeJ_T0014956.1 MGP_C3HHeJ_G0013060.1 mouse_genomes_project 5 117597610 117597748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070647.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205820 31230045 + MGP_C3HHeJ_P0070647 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070648.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205825 31239458 + MGP_C3HHeJ_P0070648 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070649.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205832 31210118 + MGP_C3HHeJ_P0070649 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070650.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205840 31304937 + MGP_C3HHeJ_P0070650 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070651.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205846 31339570 + MGP_C3HHeJ_P0070651 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070652.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205853 31342570 + MGP_C3HHeJ_P0070652 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070653.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205879 31250268 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070654.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205889 31230664 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070655.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205889 31268922 + MGP_C3HHeJ_P0070655 Depdc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070656.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205891 31221084 + MGP_C3HHeJ_P0070656 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070657.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31205896 31304935 + Depdc5 protein_coding processed_transcript MGP_C3HHeJ_T0070658.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31206274 31210130 + MGP_C3HHeJ_P0070658 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070659.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31206706 31340004 + MGP_C3HHeJ_P0070659 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070660.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31247784 31263353 + MGP_C3HHeJ_P0070660 Depdc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070661.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31268947 31339997 + MGP_C3HHeJ_P0070661 Depdc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070662.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31269045 31340004 + MGP_C3HHeJ_P0070662 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070663.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31289723 31290937 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070664.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31290018 31313337 + MGP_C3HHeJ_P0070664 Depdc5 protein_coding protein_coding MGP_C3HHeJ_T0070665.1 MGP_C3HHeJ_G0029138.1 mouse_genomes_project 5 31316323 31322550 + Depdc5 protein_coding retained_intron MGP_C3HHeJ_T0070182.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23251282 23437234 - MGP_C3HHeJ_P0070182 Kmt2c protein_coding unknown_likely_coding MGP_C3HHeJ_T0070183.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23251291 23279418 - MGP_C3HHeJ_P0070183 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070184.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23251919 23288931 - MGP_C3HHeJ_P0070184 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070185.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23253102 23497222 - MGP_C3HHeJ_P0070185 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070186.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23255146 23260795 - Kmt2c protein_coding retained_intron MGP_C3HHeJ_T0070187.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23268435 23272722 - Kmt2c protein_coding retained_intron MGP_C3HHeJ_T0070188.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23296159 23497179 - MGP_C3HHeJ_P0070188 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070189.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23353400 23497232 - MGP_C3HHeJ_P0070189 Kmt2c protein_coding protein_coding MGP_C3HHeJ_T0070190.1 MGP_C3HHeJ_G0029058.1 mouse_genomes_project 5 23365149 23497260 - Kmt2c protein_coding retained_intron MGP_C3HHeJ_T0075232.1 MGP_C3HHeJ_G0030007.1 mouse_genomes_project 5 146543813 146564571 + MGP_C3HHeJ_P0075232 Foxk1 protein_coding protein_coding MGP_C3HHeJ_T0075233.1 MGP_C3HHeJ_G0030007.1 mouse_genomes_project 5 146543816 146608510 + MGP_C3HHeJ_P0075233 Foxk1 protein_coding protein_coding MGP_C3HHeJ_T0072112.1 MGP_C3HHeJ_G0029393.1 mouse_genomes_project 5 88450366 88462082 + MGP_C3HHeJ_P0072112 Odam protein_coding protein_coding MGP_C3HHeJ_T0072113.1 MGP_C3HHeJ_G0029393.1 mouse_genomes_project 5 88451032 88460653 + MGP_C3HHeJ_P0072113 Odam protein_coding protein_coding MGP_C3HHeJ_T0070254.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27679574 27797905 + MGP_C3HHeJ_P0070254 Ube3c protein_coding protein_coding MGP_C3HHeJ_T0070255.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27679778 27751990 + MGP_C3HHeJ_P0070255 Ube3c protein_coding protein_coding MGP_C3HHeJ_T0070256.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27679818 27719680 + Ube3c protein_coding retained_intron MGP_C3HHeJ_T0070257.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27710390 27720217 + Ube3c protein_coding processed_transcript MGP_C3HHeJ_T0070258.1 MGP_C3HHeJ_G0029075.1 mouse_genomes_project 5 27750418 27751990 + Ube3c protein_coding retained_intron MGP_C3HHeJ_T0008044.1 MGP_C3HHeJ_G0006550.1 mouse_genomes_project 5 43856485 43910563 - Gm43303 lincRNA lincRNA MGP_C3HHeJ_T0008072.1 MGP_C3HHeJ_G0006574.1 mouse_genomes_project 5 64128024 64129793 + Gm42565 lincRNA lincRNA MGP_C3HHeJ_T0008116.1 MGP_C3HHeJ_G0006609.1 mouse_genomes_project 5 91995371 92021778 - Gm19619 lincRNA lincRNA MGP_C3HHeJ_T0070192.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23707809 23724699 - MGP_C3HHeJ_P0070192 Xrcc2 protein_coding protein_coding MGP_C3HHeJ_T0070193.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23710048 23711436 - Xrcc2 protein_coding processed_transcript MGP_C3HHeJ_T0070194.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23714560 23724647 - MGP_C3HHeJ_P0070194 Xrcc2 protein_coding protein_coding MGP_C3HHeJ_T0070195.1 MGP_C3HHeJ_G0029060.1 mouse_genomes_project 5 23715318 23724638 - Xrcc2 protein_coding retained_intron MGP_C3HHeJ_T0011501.1 MGP_C3HHeJ_G0009634.1 mouse_genomes_project 5 90358547 90358871 + Gm25320 misc_RNA misc_RNA MGP_C3HHeJ_T0014733.1 MGP_C3HHeJ_G0012837.1 mouse_genomes_project 5 23443657 23444259 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014698.1 MGP_C3HHeJ_G0012802.1 mouse_genomes_project 5 17122612 17124281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001663.1 MGP_C3HHeJ_G0001587.1 mouse_genomes_project 5 74565747 74567077 + TEC TEC MGP_C3HHeJ_T0072156.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89535983 89891484 + MGP_C3HHeJ_P0072156 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072157.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89536426 89537424 + Slc4a4 protein_coding processed_transcript MGP_C3HHeJ_T0072158.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89536462 89886689 + MGP_C3HHeJ_P0072158 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072159.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89536464 89887616 + MGP_C3HHeJ_P0072159 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072160.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89583454 89603612 + MGP_C3HHeJ_P0072160 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072161.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89672780 89886683 + MGP_C3HHeJ_P0072161 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072162.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89672891 89688610 + MGP_C3HHeJ_P0072162 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0072163.1 MGP_C3HHeJ_G0029413.1 mouse_genomes_project 5 89672906 89767042 + MGP_C3HHeJ_P0072163 Slc4a4 protein_coding protein_coding MGP_C3HHeJ_T0014900.1 MGP_C3HHeJ_G0013004.1 mouse_genomes_project 5 101070083 101070541 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100707.1 MGP_C3HHeJ_G0038901.1 mouse_genomes_project 5 74058705 74058826 + Snora26 snoRNA snoRNA MGP_C3HHeJ_T0100708.1 MGP_C3HHeJ_G0038902.1 mouse_genomes_project 5 77766443 77766566 - Gm22011 snoRNA snoRNA MGP_C3HHeJ_T0008048.1 MGP_C3HHeJ_G0006554.1 mouse_genomes_project 5 51130180 51131392 + Gm43177 lincRNA lincRNA MGP_C3HHeJ_T0010626.1 MGP_C3HHeJ_G0008759.1 mouse_genomes_project 5 124677999 124678064 - Mir7031 miRNA miRNA MGP_C3HHeJ_T0099465.1 MGP_C3HHeJ_G0037659.1 mouse_genomes_project 5 101158305 101158404 - Gm22838 snRNA snRNA MGP_C3HHeJ_T0008347.1 MGP_C3HHeJ_G0006764.1 mouse_genomes_project 5 147551116 147551907 + Gm43397 lincRNA lincRNA MGP_C3HHeJ_T0004619.1 MGP_C3HHeJ_G0003991.1 mouse_genomes_project 5 46887670 46890313 - 4930518C09Rik antisense antisense MGP_C3HHeJ_T0072762.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791208 109836879 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072763.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791245 109837174 + MGP_C3HHeJ_P0072763 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072764.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791250 109837340 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072765.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791250 109837985 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072766.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791251 109795120 + Mtf2 protein_coding retained_intron MGP_C3HHeJ_T0072767.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791263 109813066 + MGP_C3HHeJ_P0072767 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072768.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791276 109836718 + MGP_C3HHeJ_P0072768 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072769.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791276 109838720 + MGP_C3HHeJ_P0072769 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072770.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791276 109837986 + MGP_C3HHeJ_P0072770 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072771.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791278 109836801 + MGP_C3HHeJ_P0072771 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072772.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791278 109820895 + MGP_C3HHeJ_P0072772 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072773.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109791291 109813674 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072774.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109798628 109806876 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072775.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109803860 109837186 + Mtf2 protein_coding processed_transcript MGP_C3HHeJ_T0072776.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109812693 109830451 + MGP_C3HHeJ_P0072776 Mtf2 protein_coding protein_coding MGP_C3HHeJ_T0072777.1 MGP_C3HHeJ_G0029547.1 mouse_genomes_project 5 109818831 109833669 + MGP_C3HHeJ_P0072777 Mtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008094.1 MGP_C3HHeJ_G0006591.1 mouse_genomes_project 5 75880835 75884555 - Gm28865 lincRNA lincRNA MGP_C3HHeJ_T0099460.1 MGP_C3HHeJ_G0037654.1 mouse_genomes_project 5 91956404 91956511 - Gm23092 snRNA snRNA MGP_C3HHeJ_T0069952.1 MGP_C3HHeJ_G0029015.1 mouse_genomes_project 5 19253450 19262245 + Lrrc17 protein_coding processed_transcript MGP_C3HHeJ_T0069953.1 MGP_C3HHeJ_G0029015.1 mouse_genomes_project 5 19253454 19287812 + MGP_C3HHeJ_P0069953 Lrrc17 protein_coding protein_coding MGP_C3HHeJ_T0008063.1 MGP_C3HHeJ_G0006568.1 mouse_genomes_project 5 63879755 63885718 + lincRNA lincRNA MGP_C3HHeJ_T0001458.1 MGP_C3HHeJ_G0001386.1 mouse_genomes_project 5 29826691 29827322 + TEC TEC MGP_C3HHeJ_T0074170.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128321706 128388357 - MGP_C3HHeJ_P0074170 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074171.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128321708 128388334 - MGP_C3HHeJ_P0074171 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074172.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128322185 128339704 - MGP_C3HHeJ_P0074172 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074173.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128322406 128329729 - Scarb1 protein_coding processed_transcript MGP_C3HHeJ_T0074174.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128328519 128332241 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0074175.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128328924 128388282 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0074176.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128343720 128350944 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0074177.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128346761 128364003 - Scarb1 protein_coding processed_transcript MGP_C3HHeJ_T0074178.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128349590 128387270 - MGP_C3HHeJ_P0074178 Scarb1 protein_coding protein_coding MGP_C3HHeJ_T0074179.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128350650 128373628 - Scarb1 protein_coding processed_transcript MGP_C3HHeJ_T0074180.1 MGP_C3HHeJ_G0029802.1 mouse_genomes_project 5 128372621 128375083 - Scarb1 protein_coding retained_intron MGP_C3HHeJ_T0073275.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219909 117227544 + MGP_C3HHeJ_P0073275 2210016L21Rik protein_coding protein_coding MGP_C3HHeJ_T0073276.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219955 117224633 + 2210016L21Rik protein_coding retained_intron MGP_C3HHeJ_T0073277.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219961 117224599 + MGP_C3HHeJ_P0073277 2210016L21Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073278.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117219982 117223970 + 2210016L21Rik protein_coding retained_intron MGP_C3HHeJ_T0073279.1 MGP_C3HHeJ_G0029648.1 mouse_genomes_project 5 117223557 117225545 + MGP_C3HHeJ_P0073279 2210016L21Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008061.1 MGP_C3HHeJ_G0006566.1 mouse_genomes_project 5 63528225 63533454 + 5830416I19Rik lincRNA lincRNA MGP_C3HHeJ_T0069700.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2533015 2563714 - Cldn12 protein_coding processed_transcript MGP_C3HHeJ_T0069701.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553226 2563591 - MGP_C3HHeJ_P0069701 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069702.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553320 2563675 - MGP_C3HHeJ_P0069702 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069703.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553322 2563627 - MGP_C3HHeJ_P0069703 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069704.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2553434 2563532 - MGP_C3HHeJ_P0069704 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069705.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2556619 2563591 - MGP_C3HHeJ_P0069705 Cldn12 protein_coding protein_coding MGP_C3HHeJ_T0069706.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2559890 2563760 - Cldn12 protein_coding processed_transcript MGP_C3HHeJ_T0069707.1 MGP_C3HHeJ_G0028973.1 mouse_genomes_project 5 2562018 2563248 - Cldn12 protein_coding processed_transcript MGP_C3HHeJ_T0075131.1 MGP_C3HHeJ_G0029982.1 mouse_genomes_project 5 143366194 143370844 + MGP_C3HHeJ_P0075131 Gper1 protein_coding protein_coding MGP_C3HHeJ_T0075132.1 MGP_C3HHeJ_G0029982.1 mouse_genomes_project 5 143366323 143368933 + Gper1 protein_coding processed_transcript MGP_C3HHeJ_T0071392.1 MGP_C3HHeJ_G0029259.1 mouse_genomes_project 5 61193896 61196245 + MGP_C3HHeJ_P0071392 G6pd2 protein_coding protein_coding MGP_C3HHeJ_T0001419.1 MGP_C3HHeJ_G0001349.1 mouse_genomes_project 5 11031922 11033779 - TEC TEC MGP_C3HHeJ_T0014713.1 MGP_C3HHeJ_G0012817.1 mouse_genomes_project 5 20329349 20329645 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072293.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93157323 93159548 - Cxcl10 protein_coding retained_intron MGP_C3HHeJ_T0072294.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93157323 93159563 - MGP_C3HHeJ_P0072294 Cxcl10 protein_coding protein_coding MGP_C3HHeJ_T0072295.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93157490 93159570 - MGP_C3HHeJ_P0072295 Cxcl10 protein_coding protein_coding MGP_C3HHeJ_T0072296.1 MGP_C3HHeJ_G0029449.1 mouse_genomes_project 5 93158681 93159563 - Cxcl10 protein_coding retained_intron MGP_C3HHeJ_T0008361.1 MGP_C3HHeJ_G0006776.1 mouse_genomes_project 5 152627118 152638017 - Gm15721 lincRNA lincRNA MGP_C3HHeJ_T0015013.1 MGP_C3HHeJ_G0013117.1 mouse_genomes_project 5 149534530 149535868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075347.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147861695 147866625 + Cyth3 protein_coding retained_intron MGP_C3HHeJ_T0075348.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147861834 147950899 + MGP_C3HHeJ_P0075348 Cyth3 protein_coding protein_coding MGP_C3HHeJ_T0075349.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147873261 147933302 + MGP_C3HHeJ_P0075349 Cyth3 protein_coding protein_coding MGP_C3HHeJ_T0075350.1 MGP_C3HHeJ_G0030032.1 mouse_genomes_project 5 147875546 147933204 + MGP_C3HHeJ_P0075350 Cyth3 protein_coding protein_coding MGP_C3HHeJ_T0004723.1 MGP_C3HHeJ_G0004069.1 mouse_genomes_project 5 118640116 118641055 + Gm13837 antisense antisense MGP_C3HHeJ_T0073032.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397254 114432520 + MGP_C3HHeJ_P0073032 Hps4 protein_coding protein_coding MGP_C3HHeJ_T0073033.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397264 114398921 + Hps4 protein_coding processed_transcript MGP_C3HHeJ_T0073034.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397266 114432520 + Hps4 protein_coding retained_intron MGP_C3HHeJ_T0073035.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397266 114432520 + MGP_C3HHeJ_P0073035 Hps4 protein_coding protein_coding MGP_C3HHeJ_T0073036.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114397271 114399061 + Hps4 protein_coding processed_transcript MGP_C3HHeJ_T0073038.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114422846 114423876 + Hps4 protein_coding retained_intron MGP_C3HHeJ_T0073039.1 MGP_C3HHeJ_G0029602.1 mouse_genomes_project 5 114429442 114432507 + Hps4 protein_coding retained_intron MGP_C3HHeJ_T0074555.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585500 138601504 + MGP_C3HHeJ_P0074555 Tbl2 protein_coding protein_coding MGP_C3HHeJ_T0074556.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585529 138595565 + MGP_C3HHeJ_P0074556 Tbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074557.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585529 138593401 + MGP_C3HHeJ_P0074557 Tbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074558.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138585534 138590245 + MGP_C3HHeJ_P0074558 Tbl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074559.1 MGP_C3HHeJ_G0029869.1 mouse_genomes_project 5 138588560 138593439 + MGP_C3HHeJ_P0074559 Tbl2 protein_coding protein_coding MGP_C3HHeJ_T0015006.1 MGP_C3HHeJ_G0013110.1 mouse_genomes_project 5 147254905 147255125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008045.1 MGP_C3HHeJ_G0006551.1 mouse_genomes_project 5 44594759 44600348 - 4930405L22Rik lincRNA lincRNA MGP_C3HHeJ_T0015010.1 MGP_C3HHeJ_G0013114.1 mouse_genomes_project 5 148314639 148315596 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072418.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100126507 100235258 - MGP_C3HHeJ_P0072418 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072419.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100127991 100140413 - MGP_C3HHeJ_P0072419 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072420.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100127991 100140411 - MGP_C3HHeJ_P0072420 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072421.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100128441 100234942 - MGP_C3HHeJ_P0072421 Prkg2 protein_coding protein_coding MGP_C3HHeJ_T0072422.1 MGP_C3HHeJ_G0029476.1 mouse_genomes_project 5 100143959 100164304 - Prkg2 protein_coding retained_intron MGP_C3HHeJ_T0010625.1 MGP_C3HHeJ_G0008758.1 mouse_genomes_project 5 120914190 120914282 - Gm26455 miRNA miRNA MGP_C3HHeJ_T0004623.1 MGP_C3HHeJ_G0003995.1 mouse_genomes_project 5 52097003 52098505 - Gm17182 antisense antisense MGP_C3HHeJ_T0071950.1 MGP_C3HHeJ_G0029355.1 mouse_genomes_project 5 77276055 77283968 - MGP_C3HHeJ_P0071950 Spink2 protein_coding protein_coding MGP_C3HHeJ_T0071951.1 MGP_C3HHeJ_G0029355.1 mouse_genomes_project 5 77276055 77283935 - MGP_C3HHeJ_P0071951 Spink2 protein_coding protein_coding MGP_C3HHeJ_T0071952.1 MGP_C3HHeJ_G0029355.1 mouse_genomes_project 5 77276060 77283702 - MGP_C3HHeJ_P0071952 Spink2 protein_coding protein_coding MGP_C3HHeJ_T0098140.1 MGP_C3HHeJ_G0036352.1 mouse_genomes_project 5 21543691 21543784 - Gm24009 rRNA rRNA MGP_C3HHeJ_T0001571.1 MGP_C3HHeJ_G0001497.1 mouse_genomes_project 5 57044301 57046477 + TEC TEC MGP_C3HHeJ_T0098485.1 MGP_C3HHeJ_G0036690.1 mouse_genomes_project 5 2189225 2195415 - Gm10484 sense_intronic sense_intronic MGP_C3HHeJ_T0008150.1 MGP_C3HHeJ_G0006635.1 mouse_genomes_project 5 102926404 102929466 + Gm20484 lincRNA lincRNA MGP_C3HHeJ_T0070696.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975387 32006946 - MGP_C3HHeJ_P0070696 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070697.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975396 32006223 - MGP_C3HHeJ_P0070697 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070698.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975396 32006933 - MGP_C3HHeJ_P0070698 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070699.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31975396 32006899 - MGP_C3HHeJ_P0070699 Fam53a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070700.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31983256 32006894 - MGP_C3HHeJ_P0070700 Fam53a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070701.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31983429 32006910 - MGP_C3HHeJ_P0070701 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070702.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31985501 32006373 - MGP_C3HHeJ_P0070702 Fam53a protein_coding protein_coding MGP_C3HHeJ_T0070703.1 MGP_C3HHeJ_G0029146.1 mouse_genomes_project 5 31990940 32006916 - Fam53a protein_coding processed_transcript MGP_C3HHeJ_T0014984.1 MGP_C3HHeJ_G0013088.1 mouse_genomes_project 5 140472581 140472977 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015036.1 MGP_C3HHeJ_G0013140.1 mouse_genomes_project 5 155072172 155072560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015021.1 MGP_C3HHeJ_G0013125.1 mouse_genomes_project 5 150479605 150479806 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004700.1 MGP_C3HHeJ_G0004052.1 mouse_genomes_project 5 112287404 112289402 - Gm15792 antisense antisense MGP_C3HHeJ_T0072861.1 MGP_C3HHeJ_G0029568.1 mouse_genomes_project 5 110919450 110934236 - MGP_C3HHeJ_P0072861 protein_coding protein_coding MGP_C3HHeJ_T0070685.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693259 31734256 + MGP_C3HHeJ_P0070685 Maea protein_coding protein_coding MGP_C3HHeJ_T0070686.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693311 31723659 + MGP_C3HHeJ_P0070686 Maea protein_coding protein_coding MGP_C3HHeJ_T0070687.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693315 31721316 + MGP_C3HHeJ_P0070687 Maea protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070688.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31693935 31721367 + MGP_C3HHeJ_P0070688 Maea protein_coding protein_coding MGP_C3HHeJ_T0070689.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31723534 31732781 + Maea protein_coding retained_intron MGP_C3HHeJ_T0070690.1 MGP_C3HHeJ_G0029143.1 mouse_genomes_project 5 31732556 31733509 + Maea protein_coding retained_intron MGP_C3HHeJ_T0014973.1 MGP_C3HHeJ_G0013077.1 mouse_genomes_project 5 128916541 128917330 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100711.1 MGP_C3HHeJ_G0038905.1 mouse_genomes_project 5 84158506 84158634 - Gm24792 snoRNA snoRNA MGP_C3HHeJ_T0004742.1 MGP_C3HHeJ_G0004080.1 mouse_genomes_project 5 124159872 124170787 + Gm42917 antisense antisense MGP_C3HHeJ_T0070160.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22769362 22809666 - MGP_C3HHeJ_P0070160 Rheb protein_coding protein_coding MGP_C3HHeJ_T0070161.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22770206 22780491 - Rheb protein_coding retained_intron MGP_C3HHeJ_T0070162.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22776666 22809470 - Rheb protein_coding retained_intron MGP_C3HHeJ_T0070163.1 MGP_C3HHeJ_G0029053.1 mouse_genomes_project 5 22807045 22809651 - Rheb protein_coding retained_intron MGP_C3HHeJ_T0071706.1 MGP_C3HHeJ_G0029313.1 mouse_genomes_project 5 72385833 72389683 - Zar1 protein_coding retained_intron MGP_C3HHeJ_T0071707.1 MGP_C3HHeJ_G0029313.1 mouse_genomes_project 5 72386141 72401712 - MGP_C3HHeJ_P0071707 Zar1 protein_coding protein_coding MGP_C3HHeJ_T0071708.1 MGP_C3HHeJ_G0029313.1 mouse_genomes_project 5 72386144 72401212 - MGP_C3HHeJ_P0071708 Zar1 protein_coding protein_coding MGP_C3HHeJ_T0004555.1 MGP_C3HHeJ_G0003941.1 mouse_genomes_project 5 449178 450441 + 2510017J16Rik antisense antisense MGP_C3HHeJ_T0001767.1 MGP_C3HHeJ_G0001691.1 mouse_genomes_project 5 124394748 124396962 + TEC TEC MGP_C3HHeJ_T0075519.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150757516 150825439 + MGP_C3HHeJ_P0075519 protein_coding protein_coding MGP_C3HHeJ_T0075520.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150757613 150800112 + MGP_C3HHeJ_P0075520 protein_coding protein_coding MGP_C3HHeJ_T0075521.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150757921 150835524 + MGP_C3HHeJ_P0075521 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075522.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150784804 150787003 + protein_coding retained_intron MGP_C3HHeJ_T0075523.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150821111 150824863 + protein_coding processed_transcript MGP_C3HHeJ_T0075524.1 MGP_C3HHeJ_G0030071.1 mouse_genomes_project 5 150829059 150832207 + protein_coding retained_intron MGP_C3HHeJ_T0004701.1 MGP_C3HHeJ_G0004053.1 mouse_genomes_project 5 112406983 112408941 + Gm42596 antisense antisense MGP_C3HHeJ_T0001619.1 MGP_C3HHeJ_G0001544.1 mouse_genomes_project 5 66064792 66065462 - TEC TEC MGP_C3HHeJ_T0075003.1 MGP_C3HHeJ_G0029956.1 mouse_genomes_project 5 141890346 141891654 + MGP_C3HHeJ_P0075003 Mblac1 protein_coding protein_coding MGP_C3HHeJ_T0004778.1 MGP_C3HHeJ_G0004107.1 mouse_genomes_project 5 137920591 137927624 + Gm42884 antisense antisense MGP_C3HHeJ_T0004779.1 MGP_C3HHeJ_G0004107.1 mouse_genomes_project 5 137925071 137927824 + Gm42884 antisense antisense MGP_C3HHeJ_T0004612.1 MGP_C3HHeJ_G0003987.1 mouse_genomes_project 5 42837627 42855450 + Gm42984 antisense antisense MGP_C3HHeJ_T0070919.1 MGP_C3HHeJ_G0029177.1 mouse_genomes_project 5 33843121 33854651 + MGP_C3HHeJ_P0070919 Hmx1 protein_coding protein_coding MGP_C3HHeJ_T0070920.1 MGP_C3HHeJ_G0029177.1 mouse_genomes_project 5 33843130 33846904 + MGP_C3HHeJ_P0070920 Hmx1 protein_coding protein_coding MGP_C3HHeJ_T0001502.1 MGP_C3HHeJ_G0001429.1 mouse_genomes_project 5 43149272 43150020 - TEC TEC MGP_C3HHeJ_T0070252.1 MGP_C3HHeJ_G0029074.1 mouse_genomes_project 5 27578691 27584128 - MGP_C3HHeJ_P0070252 Mnx1 protein_coding protein_coding MGP_C3HHeJ_T0070253.1 MGP_C3HHeJ_G0029074.1 mouse_genomes_project 5 27578918 27584128 - MGP_C3HHeJ_P0070253 Mnx1 protein_coding protein_coding MGP_C3HHeJ_T0014861.1 MGP_C3HHeJ_G0012965.1 mouse_genomes_project 5 83458315 83458682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001578.1 MGP_C3HHeJ_G0001504.1 mouse_genomes_project 5 57237707 57238902 + TEC TEC MGP_C3HHeJ_T0008359.1 MGP_C3HHeJ_G0006774.1 mouse_genomes_project 5 152064171 152068559 + D5Ertd605e lincRNA lincRNA MGP_C3HHeJ_T0001471.1 MGP_C3HHeJ_G0001398.1 mouse_genomes_project 5 32886090 32889622 + TEC TEC MGP_C3HHeJ_T0071317.1 MGP_C3HHeJ_G0029246.1 mouse_genomes_project 5 51559207 51591958 - MGP_C3HHeJ_P0071317 Lgi2 protein_coding protein_coding MGP_C3HHeJ_T0071318.1 MGP_C3HHeJ_G0029246.1 mouse_genomes_project 5 51559207 51592118 - MGP_C3HHeJ_P0071318 Lgi2 protein_coding protein_coding MGP_C3HHeJ_T0008079.1 MGP_C3HHeJ_G0006580.1 mouse_genomes_project 5 73203926 73220637 - 1700025M24Rik lincRNA lincRNA MGP_C3HHeJ_T0008080.1 MGP_C3HHeJ_G0006580.1 mouse_genomes_project 5 73203926 73220625 - 1700025M24Rik lincRNA lincRNA MGP_C3HHeJ_T0008081.1 MGP_C3HHeJ_G0006580.1 mouse_genomes_project 5 73203944 73220631 - 1700025M24Rik lincRNA lincRNA MGP_C3HHeJ_T0071648.1 MGP_C3HHeJ_G0029302.1 mouse_genomes_project 5 69245041 69267522 - MGP_C3HHeJ_P0071648 Yipf7 protein_coding protein_coding MGP_C3HHeJ_T0071649.1 MGP_C3HHeJ_G0029302.1 mouse_genomes_project 5 69247680 69267463 - MGP_C3HHeJ_P0071649 Yipf7 protein_coding protein_coding MGP_C3HHeJ_T0071742.1 MGP_C3HHeJ_G0029321.1 mouse_genomes_project 5 72893399 72898964 + MGP_C3HHeJ_P0071742 Slc10a4 protein_coding protein_coding MGP_C3HHeJ_T0071743.1 MGP_C3HHeJ_G0029321.1 mouse_genomes_project 5 72893419 72898964 + MGP_C3HHeJ_P0071743 Slc10a4 protein_coding protein_coding MGP_C3HHeJ_T0074939.1 MGP_C3HHeJ_G0029942.1 mouse_genomes_project 5 141535472 141536576 - Pilrb1 protein_coding retained_intron MGP_C3HHeJ_T0074942.1 MGP_C3HHeJ_G0029942.1 mouse_genomes_project 5 141535472 141545523 - MGP_C3HHeJ_P0074942 Pilrb1 protein_coding protein_coding MGP_C3HHeJ_T0074943.1 MGP_C3HHeJ_G0029942.1 mouse_genomes_project 5 141535474 141545574 - MGP_C3HHeJ_P0074943 Pilrb1 protein_coding protein_coding MGP_C3HHeJ_T0072253.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92844123 92875320 - MGP_C3HHeJ_P0072253 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072254.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92844141 92875482 - MGP_C3HHeJ_P0072254 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072255.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92845694 92875001 - MGP_C3HHeJ_P0072255 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072256.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92845694 92875276 - MGP_C3HHeJ_P0072256 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072257.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92846477 92875421 - MGP_C3HHeJ_P0072257 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072258.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92848338 92859504 - G3bp2 protein_coding processed_transcript MGP_C3HHeJ_T0072259.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92849796 92859495 - G3bp2 protein_coding retained_intron MGP_C3HHeJ_T0072260.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92858501 92865255 - MGP_C3HHeJ_P0072260 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072261.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92860241 92875026 - MGP_C3HHeJ_P0072261 G3bp2 protein_coding protein_coding MGP_C3HHeJ_T0072262.1 MGP_C3HHeJ_G0029441.1 mouse_genomes_project 5 92861661 92875480 - G3bp2 protein_coding retained_intron MGP_C3HHeJ_T0073772.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125293097 125304146 + MGP_C3HHeJ_P0073772 Gpn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073773.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125293672 125304207 + MGP_C3HHeJ_P0073773 Gpn3 protein_coding protein_coding MGP_C3HHeJ_T0073774.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125293748 125300032 + Gpn3 protein_coding retained_intron MGP_C3HHeJ_T0073775.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125295206 125303604 + MGP_C3HHeJ_P0073775 Gpn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073776.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125302572 125304207 + MGP_C3HHeJ_P0073776 Gpn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073777.1 MGP_C3HHeJ_G0029743.1 mouse_genomes_project 5 125302597 125303837 + MGP_C3HHeJ_P0073777 Gpn3 protein_coding protein_coding MGP_C3HHeJ_T0014910.1 MGP_C3HHeJ_G0013014.1 mouse_genomes_project 5 104987847 104988423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098152.1 MGP_C3HHeJ_G0036364.1 mouse_genomes_project 5 122645983 122646092 + n-R5s176 rRNA rRNA MGP_C3HHeJ_T0070359.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29033146 29044315 + MGP_C3HHeJ_P0070359 Tmem214 protein_coding protein_coding MGP_C3HHeJ_T0070360.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29034765 29042179 + MGP_C3HHeJ_P0070360 Tmem214 protein_coding protein_coding MGP_C3HHeJ_T0070361.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29034767 29043499 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0070362.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29034769 29042603 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0070363.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29035498 29036620 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0070364.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29036907 29038729 + Tmem214 protein_coding processed_transcript MGP_C3HHeJ_T0070365.1 MGP_C3HHeJ_G0029095.1 mouse_genomes_project 5 29036952 29042598 + Tmem214 protein_coding retained_intron MGP_C3HHeJ_T0069984.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19623633 20097891 - MGP_C3HHeJ_P0069984 Reln protein_coding protein_coding MGP_C3HHeJ_T0069985.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19624074 19636575 - Reln protein_coding processed_transcript MGP_C3HHeJ_T0069986.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19624429 20097879 - MGP_C3HHeJ_P0069986 Reln protein_coding protein_coding MGP_C3HHeJ_T0069987.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19630378 19634104 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069988.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19635112 19639553 - Reln protein_coding processed_transcript MGP_C3HHeJ_T0069989.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19636139 19636495 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069990.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19639230 19685238 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069991.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19732743 19765988 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069992.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19758763 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069993.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19806529 19807759 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069994.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19819308 19886546 - MGP_C3HHeJ_P0069994 Reln protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069995.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19879949 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069996.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19926774 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069997.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 19972669 20097879 - Reln protein_coding retained_intron MGP_C3HHeJ_T0069998.1 MGP_C3HHeJ_G0029022.1 mouse_genomes_project 5 20095259 20097891 - Reln protein_coding processed_transcript MGP_C3HHeJ_T0098508.1 MGP_C3HHeJ_G0036712.1 mouse_genomes_project 5 137634960 137635376 - Gm43480 sense_intronic sense_intronic MGP_C3HHeJ_T0071926.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010166 77026297 + MGP_C3HHeJ_P0071926 Paics protein_coding protein_coding MGP_C3HHeJ_T0071927.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010207 77026301 + MGP_C3HHeJ_P0071927 Paics protein_coding protein_coding MGP_C3HHeJ_T0071928.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010227 77026105 + MGP_C3HHeJ_P0071928 Paics protein_coding protein_coding MGP_C3HHeJ_T0071929.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010241 77018124 + MGP_C3HHeJ_P0071929 Paics protein_coding protein_coding MGP_C3HHeJ_T0071930.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77010636 77021253 + MGP_C3HHeJ_P0071930 Paics protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071931.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77020249 77021744 + Paics protein_coding retained_intron MGP_C3HHeJ_T0071932.1 MGP_C3HHeJ_G0029350.1 mouse_genomes_project 5 77024948 77025633 + Paics protein_coding retained_intron MGP_C3HHeJ_T0004746.1 MGP_C3HHeJ_G0004084.1 mouse_genomes_project 5 124906275 124912979 + Gm3970 antisense antisense MGP_C3HHeJ_T0014717.1 MGP_C3HHeJ_G0012821.1 mouse_genomes_project 5 20716790 20717409 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073993.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126757877 126763600 + Kntc1 protein_coding retained_intron MGP_C3HHeJ_T0073994.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126757887 126832774 + MGP_C3HHeJ_P0073994 Kntc1 protein_coding protein_coding MGP_C3HHeJ_T0073995.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126783954 126790818 + Kntc1 protein_coding processed_transcript MGP_C3HHeJ_T0073996.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126792364 126793255 + MGP_C3HHeJ_P0073996 Kntc1 protein_coding protein_coding MGP_C3HHeJ_T0073997.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126798328 126801243 + Kntc1 protein_coding retained_intron MGP_C3HHeJ_T0073998.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126822545 126832772 + MGP_C3HHeJ_P0073998 Kntc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073999.1 MGP_C3HHeJ_G0029772.1 mouse_genomes_project 5 126830729 126832773 + Kntc1 protein_coding retained_intron MGP_C3HHeJ_T0004692.1 MGP_C3HHeJ_G0004044.1 mouse_genomes_project 5 109074667 109085387 - Gm42902 antisense antisense MGP_C3HHeJ_T0008201.1 MGP_C3HHeJ_G0006668.1 mouse_genomes_project 5 113739607 113771135 - E130006D01Rik lincRNA lincRNA MGP_C3HHeJ_T0008202.1 MGP_C3HHeJ_G0006668.1 mouse_genomes_project 5 113739626 113771157 - E130006D01Rik lincRNA lincRNA MGP_C3HHeJ_T0008203.1 MGP_C3HHeJ_G0006668.1 mouse_genomes_project 5 113739733 113771132 - E130006D01Rik lincRNA lincRNA MGP_C3HHeJ_T0100687.1 MGP_C3HHeJ_G0038881.1 mouse_genomes_project 5 5374692 5374836 + Gm23993 snoRNA snoRNA MGP_C3HHeJ_T0070636.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30877334 30952721 + MGP_C3HHeJ_P0070636 Yes1 protein_coding protein_coding MGP_C3HHeJ_T0070637.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30877613 30952716 + MGP_C3HHeJ_P0070637 Yes1 protein_coding protein_coding MGP_C3HHeJ_T0070638.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30877627 30880369 + Yes1 protein_coding retained_intron MGP_C3HHeJ_T0070639.1 MGP_C3HHeJ_G0029134.1 mouse_genomes_project 5 30905396 30923229 + MGP_C3HHeJ_P0070639 Yes1 protein_coding protein_coding MGP_C3HHeJ_T0102037.1 MGP_C3HHeJ_G0040002.1 mouse_genomes_project 5 87584030 87585093 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014885.1 MGP_C3HHeJ_G0012989.1 mouse_genomes_project 5 92493940 92494315 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074587.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138863914 139009761 - MGP_C3HHeJ_P0074587 Hip1 protein_coding protein_coding MGP_C3HHeJ_T0074588.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138863918 138894737 - MGP_C3HHeJ_P0074588 Hip1 protein_coding protein_coding MGP_C3HHeJ_T0074589.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138888538 138889718 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0074590.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138889844 138899744 - MGP_C3HHeJ_P0074590 Hip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074591.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138894027 139009766 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0074592.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138898068 138912563 - Hip1 protein_coding processed_transcript MGP_C3HHeJ_T0074593.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138909009 138948787 - MGP_C3HHeJ_P0074593 Hip1 protein_coding protein_coding MGP_C3HHeJ_T0074594.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138912446 138918250 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0074595.1 MGP_C3HHeJ_G0029877.1 mouse_genomes_project 5 138919125 139009761 - Hip1 protein_coding retained_intron MGP_C3HHeJ_T0071642.1 MGP_C3HHeJ_G0029299.1 mouse_genomes_project 5 67600548 67635921 + MGP_C3HHeJ_P0071642 Gm5108 protein_coding protein_coding MGP_C3HHeJ_T0071643.1 MGP_C3HHeJ_G0029299.1 mouse_genomes_project 5 67600618 67635851 + Gm5108 protein_coding antisense MGP_C3HHeJ_T0071644.1 MGP_C3HHeJ_G0029299.1 mouse_genomes_project 5 67600618 67635856 + Gm5108 protein_coding antisense MGP_C3HHeJ_T0071055.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35819551 35909096 + MGP_C3HHeJ_P0071055 Evc2 protein_coding protein_coding MGP_C3HHeJ_T0071056.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35819660 35871814 + Evc2 protein_coding retained_intron MGP_C3HHeJ_T0071057.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35873962 35876074 + Evc2 protein_coding processed_transcript MGP_C3HHeJ_T0071058.1 MGP_C3HHeJ_G0029201.1 mouse_genomes_project 5 35899919 35901975 + Evc2 protein_coding retained_intron MGP_C3HHeJ_T0014685.1 MGP_C3HHeJ_G0012789.1 mouse_genomes_project 5 10008867 10010437 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010598.1 MGP_C3HHeJ_G0008731.1 mouse_genomes_project 5 64139757 64139874 - Gm25306 miRNA miRNA MGP_C3HHeJ_T0071372.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937431 52971771 + MGP_C3HHeJ_P0071372 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071373.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937452 53032148 + MGP_C3HHeJ_P0071373 Tbc1d19 protein_coding protein_coding MGP_C3HHeJ_T0071374.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937473 52964275 + Tbc1d19 protein_coding processed_transcript MGP_C3HHeJ_T0071375.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937474 52958581 + Tbc1d19 protein_coding retained_intron MGP_C3HHeJ_T0071376.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937479 53032146 + MGP_C3HHeJ_P0071376 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071377.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52937504 52965814 + MGP_C3HHeJ_P0071377 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071378.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52960411 52965756 + Tbc1d19 protein_coding retained_intron MGP_C3HHeJ_T0071379.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 52964264 52975445 + Tbc1d19 protein_coding processed_transcript MGP_C3HHeJ_T0071380.1 MGP_C3HHeJ_G0029256.1 mouse_genomes_project 5 53019222 53031921 + Tbc1d19 protein_coding processed_transcript MGP_C3HHeJ_T0014754.1 MGP_C3HHeJ_G0012858.1 mouse_genomes_project 5 30747029 30747355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075313.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147516968 147530820 - E130309D02Rik protein_coding processed_transcript MGP_C3HHeJ_T0075314.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147516980 147531116 - MGP_C3HHeJ_P0075314 E130309D02Rik protein_coding protein_coding MGP_C3HHeJ_T0075315.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147516982 147530887 - E130309D02Rik protein_coding retained_intron MGP_C3HHeJ_T0075316.1 MGP_C3HHeJ_G0030025.1 mouse_genomes_project 5 147524064 147531096 - E130309D02Rik protein_coding processed_transcript MGP_C3HHeJ_T0008243.1 MGP_C3HHeJ_G0006694.1 mouse_genomes_project 5 119222298 119225219 + Gm29926 lincRNA lincRNA MGP_C3HHeJ_T0001565.1 MGP_C3HHeJ_G0001491.1 mouse_genomes_project 5 53955556 53958257 + TEC TEC MGP_C3HHeJ_T0075212.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755553 144770517 + MGP_C3HHeJ_P0075212 Brat1 protein_coding protein_coding MGP_C3HHeJ_T0075213.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755565 144770468 + MGP_C3HHeJ_P0075213 Brat1 protein_coding protein_coding MGP_C3HHeJ_T0075214.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755565 144770311 + MGP_C3HHeJ_P0075214 Brat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075215.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755592 144767073 + Brat1 protein_coding retained_intron MGP_C3HHeJ_T0075216.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755594 144766797 + Brat1 protein_coding retained_intron MGP_C3HHeJ_T0075217.1 MGP_C3HHeJ_G0030002.1 mouse_genomes_project 5 144755608 144770517 + MGP_C3HHeJ_P0075217 Brat1 protein_coding protein_coding MGP_C3HHeJ_T0075286.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147178921 147303862 - MGP_C3HHeJ_P0075286 Rnf216 protein_coding protein_coding MGP_C3HHeJ_T0075287.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147179848 147303848 - MGP_C3HHeJ_P0075287 Rnf216 protein_coding protein_coding MGP_C3HHeJ_T0075288.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147180645 147287603 - MGP_C3HHeJ_P0075288 Rnf216 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075289.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147180677 147287603 - MGP_C3HHeJ_P0075289 Rnf216 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075290.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147199453 147200855 - Rnf216 protein_coding retained_intron MGP_C3HHeJ_T0075291.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147254417 147303848 - Rnf216 protein_coding retained_intron MGP_C3HHeJ_T0075292.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147270086 147276893 - Rnf216 protein_coding retained_intron MGP_C3HHeJ_T0075293.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147279338 147303848 - Rnf216 protein_coding processed_transcript MGP_C3HHeJ_T0075294.1 MGP_C3HHeJ_G0030018.1 mouse_genomes_project 5 147279527 147303850 - Rnf216 protein_coding processed_transcript MGP_C3HHeJ_T0008366.1 MGP_C3HHeJ_G0006781.1 mouse_genomes_project 5 153696689 153745909 - Gm15406 lincRNA lincRNA MGP_C3HHeJ_T0008368.1 MGP_C3HHeJ_G0006781.1 mouse_genomes_project 5 153702456 153745852 - Gm15406 lincRNA lincRNA MGP_C3HHeJ_T0071933.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77033236 77060437 + MGP_C3HHeJ_P0071933 Srp72 protein_coding protein_coding MGP_C3HHeJ_T0071934.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77033260 77059316 + MGP_C3HHeJ_P0071934 Srp72 protein_coding protein_coding MGP_C3HHeJ_T0071935.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77033274 77039103 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071936.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77039091 77041228 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071937.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77042608 77055650 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071938.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77054496 77055407 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071939.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77055759 77057989 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071940.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77057474 77060437 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071941.1 MGP_C3HHeJ_G0029351.1 mouse_genomes_project 5 77057904 77058841 + Srp72 protein_coding retained_intron MGP_C3HHeJ_T0071676.1 MGP_C3HHeJ_G0029307.1 mouse_genomes_project 5 71215560 71329751 - protein_coding processed_transcript MGP_C3HHeJ_T0071677.1 MGP_C3HHeJ_G0029307.1 mouse_genomes_project 5 71215715 71215947 - protein_coding transcribed_processed_pseudogene MGP_C3HHeJ_T0098142.1 MGP_C3HHeJ_G0036354.1 mouse_genomes_project 5 52199790 52199869 + n-R5s171 rRNA rRNA MGP_C3HHeJ_T0014957.1 MGP_C3HHeJ_G0013061.1 mouse_genomes_project 5 117822407 117822908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014786.1 MGP_C3HHeJ_G0012890.1 mouse_genomes_project 5 46463031 46463479 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073547.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123142291 123206143 - MGP_C3HHeJ_P0073547 Tpcn1 protein_coding protein_coding MGP_C3HHeJ_T0073548.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123159448 123206082 - Tpcn1 protein_coding retained_intron MGP_C3HHeJ_T0073549.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123198939 123206064 - Tpcn1 protein_coding retained_intron MGP_C3HHeJ_T0073550.1 MGP_C3HHeJ_G0029701.1 mouse_genomes_project 5 123204626 123206069 - Tpcn1 protein_coding retained_intron MGP_C3HHeJ_T0073091.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115619632 115622426 + Wscd2 protein_coding retained_intron MGP_C3HHeJ_T0073092.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115619746 115715075 + MGP_C3HHeJ_P0073092 Wscd2 protein_coding protein_coding MGP_C3HHeJ_T0073093.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115620051 115677560 + Wscd2 protein_coding retained_intron MGP_C3HHeJ_T0073094.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115672931 115679454 + Wscd2 protein_coding retained_intron MGP_C3HHeJ_T0073095.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115695491 115715068 + Wscd2 protein_coding processed_transcript MGP_C3HHeJ_T0073096.1 MGP_C3HHeJ_G0029614.1 mouse_genomes_project 5 115703953 115707132 + Wscd2 protein_coding processed_transcript MGP_C3HHeJ_T0010620.1 MGP_C3HHeJ_G0008753.1 mouse_genomes_project 5 115444093 115444149 - Mir7230 miRNA miRNA MGP_C3HHeJ_T0014947.1 MGP_C3HHeJ_G0013051.1 mouse_genomes_project 5 115975656 115976024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001698.1 MGP_C3HHeJ_G0001622.1 mouse_genomes_project 5 103110612 103113206 + TEC TEC MGP_C3HHeJ_T0071646.1 MGP_C3HHeJ_G0029301.1 mouse_genomes_project 5 68824696 69065217 - MGP_C3HHeJ_P0071646 Kctd8 protein_coding protein_coding MGP_C3HHeJ_T0071647.1 MGP_C3HHeJ_G0029301.1 mouse_genomes_project 5 69016340 69065215 - MGP_C3HHeJ_P0071647 Kctd8 protein_coding protein_coding MGP_C3HHeJ_T0014811.1 MGP_C3HHeJ_G0012915.1 mouse_genomes_project 5 58841853 58842232 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014895.1 MGP_C3HHeJ_G0012999.1 mouse_genomes_project 5 99246739 99247355 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014981.1 MGP_C3HHeJ_G0013085.1 mouse_genomes_project 5 139177896 139178766 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099458.1 MGP_C3HHeJ_G0037652.1 mouse_genomes_project 5 87442086 87442193 - Gm25211 snRNA snRNA MGP_C3HHeJ_T0014804.1 MGP_C3HHeJ_G0012908.1 mouse_genomes_project 5 56509756 56511106 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070763.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367881 32369472 + MGP_C3HHeJ_P0070763 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0070764.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367885 32369468 + Gm1673 protein_coding retained_intron MGP_C3HHeJ_T0070765.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367918 32369468 + MGP_C3HHeJ_P0070765 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0070766.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367922 32369465 + MGP_C3HHeJ_P0070766 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0070767.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367958 32369469 + MGP_C3HHeJ_P0070767 Gm1673 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070768.1 MGP_C3HHeJ_G0029155.1 mouse_genomes_project 5 32367982 32369468 + MGP_C3HHeJ_P0070768 Gm1673 protein_coding protein_coding MGP_C3HHeJ_T0008310.1 MGP_C3HHeJ_G0006738.1 mouse_genomes_project 5 131664869 131666366 - 4930573I07Rik lincRNA lincRNA MGP_C3HHeJ_T0008311.1 MGP_C3HHeJ_G0006738.1 mouse_genomes_project 5 131664871 131666389 - 4930573I07Rik lincRNA lincRNA MGP_C3HHeJ_T0072130.1 MGP_C3HHeJ_G0029404.1 mouse_genomes_project 5 89034853 89044712 + MGP_C3HHeJ_P0072130 Amtn protein_coding protein_coding MGP_C3HHeJ_T0001737.1 MGP_C3HHeJ_G0001661.1 mouse_genomes_project 5 116299579 116301453 + TEC TEC MGP_C3HHeJ_T0099425.1 MGP_C3HHeJ_G0037619.1 mouse_genomes_project 5 22386999 22387100 - Gm22333 snRNA snRNA MGP_C3HHeJ_T0007965.1 MGP_C3HHeJ_G0006499.1 mouse_genomes_project 5 16064337 16072831 - Gm43030 lincRNA lincRNA MGP_C3HHeJ_T0100716.1 MGP_C3HHeJ_G0038910.1 mouse_genomes_project 5 93909303 93909439 + Gm22915 snoRNA snoRNA MGP_C3HHeJ_T0001594.1 MGP_C3HHeJ_G0001519.1 mouse_genomes_project 5 64852043 64853230 - TEC TEC MGP_C3HHeJ_T0001583.1 MGP_C3HHeJ_G0001509.1 mouse_genomes_project 5 57460050 57461897 - TEC TEC MGP_C3HHeJ_T0004824.1 MGP_C3HHeJ_G0004139.1 mouse_genomes_project 5 154890567 154906651 - Gm42557 antisense antisense MGP_C3HHeJ_T0014667.1 MGP_C3HHeJ_G0012771.1 mouse_genomes_project 5 2614798 2615228 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072129.1 MGP_C3HHeJ_G0029403.1 mouse_genomes_project 5 88960095 88972408 + MGP_C3HHeJ_P0072129 Prol1 protein_coding protein_coding MGP_C3HHeJ_T0072936.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112319568 112407162 - MGP_C3HHeJ_P0072936 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0072937.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112319575 112407498 - MGP_C3HHeJ_P0072937 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0072938.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112320612 112407481 - MGP_C3HHeJ_P0072938 Fbrsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072939.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112336790 112392076 - MGP_C3HHeJ_P0072939 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0072940.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112388933 112390924 - Fbrsl1 protein_coding processed_transcript MGP_C3HHeJ_T0072941.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112391056 112392383 - Fbrsl1 protein_coding processed_transcript MGP_C3HHeJ_T0072942.1 MGP_C3HHeJ_G0029584.1 mouse_genomes_project 5 112391056 112407498 - MGP_C3HHeJ_P0072942 Fbrsl1 protein_coding protein_coding MGP_C3HHeJ_T0001407.1 MGP_C3HHeJ_G0001337.1 mouse_genomes_project 5 5986769 5987070 + TEC TEC MGP_C3HHeJ_T0074854.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204101 141226719 + MGP_C3HHeJ_P0074854 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074855.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204112 141226721 + MGP_C3HHeJ_P0074855 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074856.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204125 141205624 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074857.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204130 141226719 + MGP_C3HHeJ_P0074857 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074858.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141204981 141226705 + MGP_C3HHeJ_P0074858 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074859.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141205066 141226716 + MGP_C3HHeJ_P0074859 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074860.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141205712 141208521 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074861.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141208613 141211844 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074862.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141215930 141217870 + MGP_C3HHeJ_P0074862 Tfr2 protein_coding protein_coding MGP_C3HHeJ_T0074863.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141222471 141226229 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0074864.1 MGP_C3HHeJ_G0029926.1 mouse_genomes_project 5 141222471 141223296 + Tfr2 protein_coding retained_intron MGP_C3HHeJ_T0073813.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648541 125673409 + MGP_C3HHeJ_P0073813 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073814.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648566 125653475 + P2rx4 protein_coding retained_intron MGP_C3HHeJ_T0073815.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648567 125662069 + P2rx4 protein_coding retained_intron MGP_C3HHeJ_T0073816.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648577 125669047 + MGP_C3HHeJ_P0073816 P2rx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073817.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648581 125672715 + MGP_C3HHeJ_P0073817 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073818.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648651 125671984 + MGP_C3HHeJ_P0073818 P2rx4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073819.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648651 125671994 + MGP_C3HHeJ_P0073819 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073820.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125648651 125671994 + MGP_C3HHeJ_P0073820 P2rx4 protein_coding protein_coding MGP_C3HHeJ_T0073821.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125668335 125668946 + P2rx4 protein_coding retained_intron MGP_C3HHeJ_T0073822.1 MGP_C3HHeJ_G0029749.1 mouse_genomes_project 5 125671334 125672256 + P2rx4 protein_coding processed_transcript MGP_C3HHeJ_T0070135.1 MGP_C3HHeJ_G0029047.1 mouse_genomes_project 5 22524678 22536648 - MGP_C3HHeJ_P0070135 Abcf2 protein_coding protein_coding MGP_C3HHeJ_T0014896.1 MGP_C3HHeJ_G0013000.1 mouse_genomes_project 5 99334510 99335506 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075636.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153801957 153809808 - MGP_C3HHeJ_P0075636 Hmgb1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075637.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803223 153807493 - MGP_C3HHeJ_P0075637 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075638.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803223 153959423 - MGP_C3HHeJ_P0075638 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075639.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803540 153804835 - Hmgb1 protein_coding retained_intron MGP_C3HHeJ_T0075640.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153803788 153809760 - MGP_C3HHeJ_P0075640 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075641.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804211 153809135 - MGP_C3HHeJ_P0075641 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075642.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804455 153809765 - Hmgb1 protein_coding retained_intron MGP_C3HHeJ_T0075643.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804702 153810264 - MGP_C3HHeJ_P0075643 Hmgb1 protein_coding protein_coding MGP_C3HHeJ_T0075644.1 MGP_C3HHeJ_G0030095.1 mouse_genomes_project 5 153804760 153809730 - Hmgb1 protein_coding retained_intron MGP_C3HHeJ_T0102049.1 MGP_C3HHeJ_G0040014.1 mouse_genomes_project 5 101478705 101626723 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004694.1 MGP_C3HHeJ_G0004046.1 mouse_genomes_project 5 109314596 109319091 - A930041C12Rik antisense antisense MGP_C3HHeJ_T0073174.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116457399 116477064 - MGP_C3HHeJ_P0073174 Foxn4 protein_coding protein_coding MGP_C3HHeJ_T0073175.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116458820 116466384 - MGP_C3HHeJ_P0073175 Foxn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073176.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116463602 116476959 - MGP_C3HHeJ_P0073176 Foxn4 protein_coding protein_coding MGP_C3HHeJ_T0073177.1 MGP_C3HHeJ_G0029630.1 mouse_genomes_project 5 116465969 116477006 - Foxn4 protein_coding retained_intron MGP_C3HHeJ_T0010604.1 MGP_C3HHeJ_G0008737.1 mouse_genomes_project 5 75942105 75942206 + Gm25374 miRNA miRNA MGP_C3HHeJ_T0001591.1 MGP_C3HHeJ_G0001516.1 mouse_genomes_project 5 63972206 63973148 + TEC TEC MGP_C3HHeJ_T0069659.1 MGP_C3HHeJ_G0028966.1 mouse_genomes_project 5 718204 738612 + MGP_C3HHeJ_P0069659 Lrrd1 protein_coding protein_coding MGP_C3HHeJ_T0069660.1 MGP_C3HHeJ_G0028966.1 mouse_genomes_project 5 718218 723219 + MGP_C3HHeJ_P0069660 Lrrd1 protein_coding protein_coding MGP_C3HHeJ_T0074698.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139688203 139708364 - MGP_C3HHeJ_P0074698 Orai2 protein_coding protein_coding MGP_C3HHeJ_T0074699.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139688208 139708279 - MGP_C3HHeJ_P0074699 Orai2 protein_coding protein_coding MGP_C3HHeJ_T0074700.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139691532 139708285 - MGP_C3HHeJ_P0074700 Orai2 protein_coding protein_coding MGP_C3HHeJ_T0074701.1 MGP_C3HHeJ_G0029897.1 mouse_genomes_project 5 139703910 139708284 - Orai2 protein_coding retained_intron MGP_C3HHeJ_T0072820.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428244 110442639 + MGP_C3HHeJ_P0072820 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072821.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428306 110447390 + MGP_C3HHeJ_P0072821 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072822.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428473 110445866 + MGP_C3HHeJ_P0072822 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072823.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110428480 110445274 + MGP_C3HHeJ_P0072823 Tmem175 protein_coding protein_coding MGP_C3HHeJ_T0072824.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110440290 110441804 + Tmem175 protein_coding retained_intron MGP_C3HHeJ_T0072825.1 MGP_C3HHeJ_G0029558.1 mouse_genomes_project 5 110442933 110443716 + Tmem175 protein_coding processed_transcript MGP_C3HHeJ_T0072226.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91666841 91673434 + Mthfd2l protein_coding processed_transcript MGP_C3HHeJ_T0072227.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91666980 91669146 + MGP_C3HHeJ_P0072227 Mthfd2l protein_coding protein_coding MGP_C3HHeJ_T0072228.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91667004 91758121 + MGP_C3HHeJ_P0072228 Mthfd2l protein_coding protein_coding MGP_C3HHeJ_T0072229.1 MGP_C3HHeJ_G0029432.1 mouse_genomes_project 5 91683298 91710900 + Mthfd2l protein_coding retained_intron MGP_C3HHeJ_T0010588.1 MGP_C3HHeJ_G0008721.1 mouse_genomes_project 5 32994561 32994624 + Mir7036b miRNA miRNA MGP_C3HHeJ_T0070177.1 MGP_C3HHeJ_G0029057.1 mouse_genomes_project 5 23209097 23209403 - MGP_C3HHeJ_P0070177 E130116L18Rik protein_coding protein_coding MGP_C3HHeJ_T0073504.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121069643 121235156 + Med13l protein_coding retained_intron MGP_C3HHeJ_T0073505.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121069683 121281579 + MGP_C3HHeJ_P0073505 Med13l protein_coding protein_coding MGP_C3HHeJ_T0073506.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121069703 121280056 + MGP_C3HHeJ_P0073506 Med13l protein_coding protein_coding MGP_C3HHeJ_T0073507.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121070551 121106023 + Med13l protein_coding processed_transcript MGP_C3HHeJ_T0073508.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121263500 121280056 + Med13l protein_coding retained_intron MGP_C3HHeJ_T0073509.1 MGP_C3HHeJ_G0029692.1 mouse_genomes_project 5 121266508 121280056 + Med13l protein_coding retained_intron MGP_C3HHeJ_T0008158.1 MGP_C3HHeJ_G0006642.1 mouse_genomes_project 5 105626094 105633511 - Gm42792 lincRNA lincRNA MGP_C3HHeJ_T0073533.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123081205 123088586 + MGP_C3HHeJ_P0073533 Sds protein_coding protein_coding MGP_C3HHeJ_T0073534.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123081210 123088586 + MGP_C3HHeJ_P0073534 Sds protein_coding protein_coding MGP_C3HHeJ_T0073535.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123083539 123085341 + MGP_C3HHeJ_P0073535 Sds protein_coding protein_coding MGP_C3HHeJ_T0073536.1 MGP_C3HHeJ_G0029698.1 mouse_genomes_project 5 123085016 123085542 + Sds protein_coding retained_intron MGP_C3HHeJ_T0017947.1 MGP_C3HHeJ_G0015369.1 mouse_genomes_project 5 109413807 109415744 + A430072P03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017948.1 MGP_C3HHeJ_G0015369.1 mouse_genomes_project 5 109415037 109417441 + A430072P03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100699.1 MGP_C3HHeJ_G0038893.1 mouse_genomes_project 5 57696661 57696795 + Gm22536 snoRNA snoRNA MGP_C3HHeJ_T0074039.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127147566 127148520 + MGP_C3HHeJ_P0074039 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074040.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127147576 127149674 + MGP_C3HHeJ_P0074040 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074041.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127147599 127149574 + MGP_C3HHeJ_P0074041 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074042.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127148156 127149512 + MGP_C3HHeJ_P0074042 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0074043.1 MGP_C3HHeJ_G0029782.1 mouse_genomes_project 5 127148788 127149669 + MGP_C3HHeJ_P0074043 Arl6ip4 protein_coding protein_coding MGP_C3HHeJ_T0072274.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93063829 93084121 - MGP_C3HHeJ_P0072274 Naaa protein_coding protein_coding MGP_C3HHeJ_T0072275.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93063834 93068877 - Naaa protein_coding retained_intron MGP_C3HHeJ_T0072276.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93064578 93084116 - MGP_C3HHeJ_P0072276 Naaa protein_coding protein_coding MGP_C3HHeJ_T0072277.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93065689 93078653 - MGP_C3HHeJ_P0072277 Naaa protein_coding protein_coding MGP_C3HHeJ_T0072278.1 MGP_C3HHeJ_G0029445.1 mouse_genomes_project 5 93081767 93084116 - Naaa protein_coding retained_intron MGP_C3HHeJ_T0075118.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143299301 143406484 - MGP_C3HHeJ_P0075118 3110082I17Rik protein_coding protein_coding MGP_C3HHeJ_T0075119.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143299301 143406509 - MGP_C3HHeJ_P0075119 3110082I17Rik protein_coding protein_coding MGP_C3HHeJ_T0075120.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143303186 143406493 - 3110082I17Rik protein_coding retained_intron MGP_C3HHeJ_T0075130.1 MGP_C3HHeJ_G0029979.1 mouse_genomes_project 5 143357380 143401524 - 3110082I17Rik protein_coding processed_transcript MGP_C3HHeJ_T0001593.1 MGP_C3HHeJ_G0001518.1 mouse_genomes_project 5 64499753 64502051 + TEC TEC MGP_C3HHeJ_T0001531.1 MGP_C3HHeJ_G0001457.1 mouse_genomes_project 5 47850373 47852320 - TEC TEC MGP_C3HHeJ_T0001746.1 MGP_C3HHeJ_G0001670.1 mouse_genomes_project 5 118894087 118895430 - TEC TEC MGP_C3HHeJ_T0001540.1 MGP_C3HHeJ_G0001466.1 mouse_genomes_project 5 47991363 47994260 - TEC TEC MGP_C3HHeJ_T0069597.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 192059 195028 + MGP_C3HHeJ_P0069597 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069598.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 194306 195012 + MGP_C3HHeJ_P0069598 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069599.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 194490 248108 + MGP_C3HHeJ_P0069599 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069600.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 194886 386407 + MGP_C3HHeJ_P0069600 Cdk6 protein_coding protein_coding MGP_C3HHeJ_T0069601.1 MGP_C3HHeJ_G0028957.1 mouse_genomes_project 5 333602 335827 + Cdk6 protein_coding retained_intron MGP_C3HHeJ_T0075562.1 MGP_C3HHeJ_G0030083.1 mouse_genomes_project 5 151935674 151942140 - MGP_C3HHeJ_P0075562 Cdx2 protein_coding protein_coding MGP_C3HHeJ_T0004637.1 MGP_C3HHeJ_G0004008.1 mouse_genomes_project 5 67516473 67577362 + Gm15477 antisense antisense MGP_C3HHeJ_T0004638.1 MGP_C3HHeJ_G0004008.1 mouse_genomes_project 5 67516541 67572838 + Gm15477 antisense antisense MGP_C3HHeJ_T0010584.1 MGP_C3HHeJ_G0008717.1 mouse_genomes_project 5 28339089 28339167 + Mir1960 miRNA miRNA MGP_C3HHeJ_T0001827.1 MGP_C3HHeJ_G0001750.1 mouse_genomes_project 5 135459477 135460807 - TEC TEC MGP_C3HHeJ_T0001724.1 MGP_C3HHeJ_G0001648.1 mouse_genomes_project 5 113318983 113319790 - TEC TEC MGP_C3HHeJ_T0004571.1 MGP_C3HHeJ_G0003955.1 mouse_genomes_project 5 22277059 22280353 + Gm15589 antisense antisense MGP_C3HHeJ_T0007993.1 MGP_C3HHeJ_G0006515.1 mouse_genomes_project 5 26557896 26572149 + Gm26894 lincRNA lincRNA MGP_C3HHeJ_T0072793.1 MGP_C3HHeJ_G0029552.1 mouse_genomes_project 5 110170543 110215298 + MGP_C3HHeJ_P0072793 Pde6b protein_coding protein_coding MGP_C3HHeJ_T0072794.1 MGP_C3HHeJ_G0029552.1 mouse_genomes_project 5 110170578 110215222 + Pde6b protein_coding retained_intron MGP_C3HHeJ_T0072795.1 MGP_C3HHeJ_G0029552.1 mouse_genomes_project 5 110213930 110215953 + Pde6b protein_coding retained_intron MGP_C3HHeJ_T0014748.1 MGP_C3HHeJ_G0012852.1 mouse_genomes_project 5 27940099 27940787 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001627.1 MGP_C3HHeJ_G0001552.1 mouse_genomes_project 5 66766382 66769009 + TEC TEC MGP_C3HHeJ_T0074871.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250079 141256385 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074872.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250079 141256464 - MGP_C3HHeJ_P0074872 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074873.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250081 141250775 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074874.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250081 141255451 - MGP_C3HHeJ_P0074874 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074875.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141250084 141256353 - MGP_C3HHeJ_P0074875 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074876.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141251994 141253169 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074877.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252061 141256320 - Pcolce protein_coding processed_transcript MGP_C3HHeJ_T0074878.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252410 141255679 - MGP_C3HHeJ_P0074878 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074879.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252486 141258749 - MGP_C3HHeJ_P0074879 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074880.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252486 141258771 - MGP_C3HHeJ_P0074880 Pcolce protein_coding protein_coding MGP_C3HHeJ_T0074881.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141252697 141256296 - Pcolce protein_coding retained_intron MGP_C3HHeJ_T0074882.1 MGP_C3HHeJ_G0029928.1 mouse_genomes_project 5 141253915 141256303 - Pcolce protein_coding processed_transcript MGP_C3HHeJ_T0014822.1 MGP_C3HHeJ_G0012926.1 mouse_genomes_project 5 61402598 61403214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075181.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144340317 144394254 - MGP_C3HHeJ_P0075181 Snx8 protein_coding protein_coding MGP_C3HHeJ_T0075182.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144340322 144361406 - MGP_C3HHeJ_P0075182 Snx8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075183.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144353779 144354538 - Snx8 protein_coding retained_intron MGP_C3HHeJ_T0075184.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144354455 144367989 - MGP_C3HHeJ_P0075184 Snx8 protein_coding protein_coding MGP_C3HHeJ_T0075185.1 MGP_C3HHeJ_G0029995.1 mouse_genomes_project 5 144354471 144394254 - MGP_C3HHeJ_P0075185 Snx8 protein_coding protein_coding MGP_C3HHeJ_T0010607.1 MGP_C3HHeJ_G0008740.1 mouse_genomes_project 5 83888824 83888907 + Gm44303 miRNA miRNA MGP_C3HHeJ_T0014976.1 MGP_C3HHeJ_G0013080.1 mouse_genomes_project 5 136817148 136818114 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099450.1 MGP_C3HHeJ_G0037644.1 mouse_genomes_project 5 75584167 75584272 - Gm24502 snRNA snRNA MGP_C3HHeJ_T0075330.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147576667 147611604 + MGP_C3HHeJ_P0075330 Grid2ip protein_coding protein_coding MGP_C3HHeJ_T0075331.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147583121 147611634 + MGP_C3HHeJ_P0075331 Grid2ip protein_coding protein_coding MGP_C3HHeJ_T0075332.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147588901 147611988 + MGP_C3HHeJ_P0075332 Grid2ip protein_coding protein_coding MGP_C3HHeJ_T0075333.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147591783 147594543 + Grid2ip protein_coding retained_intron MGP_C3HHeJ_T0075334.1 MGP_C3HHeJ_G0030027.1 mouse_genomes_project 5 147594270 147600185 + Grid2ip protein_coding retained_intron MGP_C3HHeJ_T0014960.1 MGP_C3HHeJ_G0013064.1 mouse_genomes_project 5 119727402 119727780 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074770.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140626437 140637538 - MGP_C3HHeJ_P0074770 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0074771.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140626786 140629094 - Ap1s1 protein_coding retained_intron MGP_C3HHeJ_T0074772.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140628822 140637198 - MGP_C3HHeJ_P0074772 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0074773.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140628839 140637445 - MGP_C3HHeJ_P0074773 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0074774.1 MGP_C3HHeJ_G0029909.1 mouse_genomes_project 5 140634470 140636810 - MGP_C3HHeJ_P0074774 Ap1s1 protein_coding protein_coding MGP_C3HHeJ_T0072610.1 MGP_C3HHeJ_G0029515.1 mouse_genomes_project 5 106312301 106398380 - protein_coding processed_transcript MGP_C3HHeJ_T0008026.1 MGP_C3HHeJ_G0006535.1 mouse_genomes_project 5 37790900 37845190 - Gm43453 lincRNA lincRNA MGP_C3HHeJ_T0071315.1 MGP_C3HHeJ_G0029245.1 mouse_genomes_project 5 51393086 51492159 - MGP_C3HHeJ_P0071315 Ccdc149 protein_coding protein_coding MGP_C3HHeJ_T0071316.1 MGP_C3HHeJ_G0029245.1 mouse_genomes_project 5 51393092 51492282 - MGP_C3HHeJ_P0071316 Ccdc149 protein_coding protein_coding MGP_C3HHeJ_T0001459.1 MGP_C3HHeJ_G0001387.1 mouse_genomes_project 5 29956944 29957176 + TEC TEC MGP_C3HHeJ_T0072530.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103162027 103252561 - MGP_C3HHeJ_P0072530 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072531.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103162028 103401635 - MGP_C3HHeJ_P0072531 protein_coding protein_coding MGP_C3HHeJ_T0072532.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103164009 103180491 - protein_coding retained_intron MGP_C3HHeJ_T0072533.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103165230 103310484 - MGP_C3HHeJ_P0072533 protein_coding protein_coding MGP_C3HHeJ_T0072534.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103253000 103261037 - MGP_C3HHeJ_P0072534 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072535.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103259489 103401635 - MGP_C3HHeJ_P0072535 protein_coding protein_coding MGP_C3HHeJ_T0072536.1 MGP_C3HHeJ_G0029496.1 mouse_genomes_project 5 103265264 103267860 - protein_coding processed_transcript MGP_C3HHeJ_T0014735.1 MGP_C3HHeJ_G0012839.1 mouse_genomes_project 5 23729105 23729466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099470.1 MGP_C3HHeJ_G0037664.1 mouse_genomes_project 5 107688961 107689068 - Gm25672 snRNA snRNA MGP_C3HHeJ_T0073758.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125236766 125269515 - MGP_C3HHeJ_P0073758 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073759.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125236876 125266649 - MGP_C3HHeJ_P0073759 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073760.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125236878 125269588 - MGP_C3HHeJ_P0073760 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073761.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125266626 125268140 - MGP_C3HHeJ_P0073761 Rad9b protein_coding protein_coding MGP_C3HHeJ_T0073762.1 MGP_C3HHeJ_G0029740.1 mouse_genomes_project 5 125267849 125269575 - Rad9b protein_coding retained_intron MGP_C3HHeJ_T0017944.1 MGP_C3HHeJ_G0015367.1 mouse_genomes_project 5 91286577 91324094 - Gm43448 processed_transcript processed_transcript MGP_C3HHeJ_T0017945.1 MGP_C3HHeJ_G0015367.1 mouse_genomes_project 5 91304857 91324114 - Gm43448 processed_transcript processed_transcript MGP_C3HHeJ_T0072799.1 MGP_C3HHeJ_G0029554.1 mouse_genomes_project 5 110227259 110235757 - MGP_C3HHeJ_P0072799 Mfsd7a protein_coding protein_coding MGP_C3HHeJ_T0017897.1 MGP_C3HHeJ_G0015351.1 mouse_genomes_project 5 23081300 23083238 + 2900005J15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017898.1 MGP_C3HHeJ_G0015351.1 mouse_genomes_project 5 23081775 23091396 + 2900005J15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0008204.1 MGP_C3HHeJ_G0006669.1 mouse_genomes_project 5 113749513 113756406 + Gm16019 lincRNA lincRNA MGP_C3HHeJ_T0075138.1 MGP_C3HHeJ_G0029984.1 mouse_genomes_project 5 143494776 143499419 + MGP_C3HHeJ_P0075138 Uncx protein_coding protein_coding MGP_C3HHeJ_T0075139.1 MGP_C3HHeJ_G0029984.1 mouse_genomes_project 5 143495180 143496551 + MGP_C3HHeJ_P0075139 Uncx protein_coding protein_coding MGP_C3HHeJ_T0075115.1 MGP_C3HHeJ_G0029978.1 mouse_genomes_project 5 143291664 143294187 + Cyp2w1 protein_coding retained_intron MGP_C3HHeJ_T0075116.1 MGP_C3HHeJ_G0029978.1 mouse_genomes_project 5 143291664 143296598 + MGP_C3HHeJ_P0075116 Cyp2w1 protein_coding protein_coding MGP_C3HHeJ_T0075117.1 MGP_C3HHeJ_G0029978.1 mouse_genomes_project 5 143294140 143296232 + MGP_C3HHeJ_P0075117 Cyp2w1 protein_coding protein_coding MGP_C3HHeJ_T0070259.1 MGP_C3HHeJ_G0029076.1 mouse_genomes_project 5 27861558 27861858 - MGP_C3HHeJ_P0070259 Gm5129 protein_coding protein_coding MGP_C3HHeJ_T0069610.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 435636 448408 + MGP_C3HHeJ_P0069610 1700109H08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069611.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 435743 448423 + MGP_C3HHeJ_P0069611 1700109H08Rik protein_coding protein_coding MGP_C3HHeJ_T0069612.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 439754 448423 + MGP_C3HHeJ_P0069612 1700109H08Rik protein_coding protein_coding MGP_C3HHeJ_T0069613.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 442289 444516 + 1700109H08Rik protein_coding retained_intron MGP_C3HHeJ_T0069614.1 MGP_C3HHeJ_G0028959.1 mouse_genomes_project 5 444564 448411 + MGP_C3HHeJ_P0069614 1700109H08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010646.1 MGP_C3HHeJ_G0008779.1 mouse_genomes_project 5 141860198 141860280 - Mir106b miRNA miRNA MGP_C3HHeJ_T0014783.1 MGP_C3HHeJ_G0012887.1 mouse_genomes_project 5 43030487 43031124 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015008.1 MGP_C3HHeJ_G0013112.1 mouse_genomes_project 5 147680789 147681327 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070970.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34488955 34876336 - MGP_C3HHeJ_P0070970 Sorcs2 protein_coding protein_coding MGP_C3HHeJ_T0070971.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34532644 34876319 - Sorcs2 protein_coding retained_intron MGP_C3HHeJ_T0070972.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34536940 34744527 - MGP_C3HHeJ_P0070972 Sorcs2 protein_coding protein_coding MGP_C3HHeJ_T0070973.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34625311 34876351 - MGP_C3HHeJ_P0070973 Sorcs2 protein_coding protein_coding MGP_C3HHeJ_T0070974.1 MGP_C3HHeJ_G0029185.1 mouse_genomes_project 5 34626341 34844165 - Sorcs2 protein_coding processed_transcript MGP_C3HHeJ_T0015030.1 MGP_C3HHeJ_G0013134.1 mouse_genomes_project 5 152534871 152535346 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001448.1 MGP_C3HHeJ_G0001377.1 mouse_genomes_project 5 26267322 26267687 - TEC TEC MGP_C3HHeJ_T0072455.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101325130 101410005 - MGP_C3HHeJ_P0072455 Tmem150c protein_coding protein_coding MGP_C3HHeJ_T0072456.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101331156 101409631 - Tmem150c protein_coding retained_intron MGP_C3HHeJ_T0072457.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101331157 101372910 - Tmem150c protein_coding retained_intron MGP_C3HHeJ_T0072458.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101333216 101409767 - Tmem150c protein_coding retained_intron MGP_C3HHeJ_T0072459.1 MGP_C3HHeJ_G0029483.1 mouse_genomes_project 5 101333337 101409480 - MGP_C3HHeJ_P0072459 Tmem150c protein_coding protein_coding MGP_C3HHeJ_T0004632.1 MGP_C3HHeJ_G0004003.1 mouse_genomes_project 5 66626598 66627149 - Gm15949 antisense antisense MGP_C3HHeJ_T0001433.1 MGP_C3HHeJ_G0001363.1 mouse_genomes_project 5 18373829 18374328 + TEC TEC MGP_C3HHeJ_T0098501.1 MGP_C3HHeJ_G0036706.1 mouse_genomes_project 5 117849351 117850036 + Gm13840 sense_intronic sense_intronic MGP_C3HHeJ_T0004729.1 MGP_C3HHeJ_G0004073.1 mouse_genomes_project 5 120403483 120407264 - Gm26995 antisense antisense MGP_C3HHeJ_T0001605.1 MGP_C3HHeJ_G0001530.1 mouse_genomes_project 5 65246920 65250933 - TEC TEC MGP_C3HHeJ_T0075411.1 MGP_C3HHeJ_G0030047.1 mouse_genomes_project 5 148778587 148790426 + MGP_C3HHeJ_P0075411 Nptx2 protein_coding protein_coding MGP_C3HHeJ_T0001603.1 MGP_C3HHeJ_G0001528.1 mouse_genomes_project 5 65188802 65191786 + TEC TEC MGP_C3HHeJ_T0001624.1 MGP_C3HHeJ_G0001549.1 mouse_genomes_project 5 66347802 66349371 + TEC TEC MGP_C3HHeJ_T0073284.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117294763 117388499 + MGP_C3HHeJ_P0073284 Sppl3 protein_coding protein_coding MGP_C3HHeJ_T0073285.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117294772 117348397 + Sppl3 protein_coding processed_transcript MGP_C3HHeJ_T0073286.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117295129 117373652 + MGP_C3HHeJ_P0073286 Sppl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073287.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117362327 117364833 + Sppl3 protein_coding retained_intron MGP_C3HHeJ_T0073288.1 MGP_C3HHeJ_G0029650.1 mouse_genomes_project 5 117384465 117387965 + Sppl3 protein_coding retained_intron MGP_C3HHeJ_T0072105.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88370987 88387266 + MGP_C3HHeJ_P0072105 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072106.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88371028 88387257 + MGP_C3HHeJ_P0072106 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072107.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88371029 88381329 + MGP_C3HHeJ_P0072107 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072108.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88371032 88387161 + MGP_C3HHeJ_P0072108 Csn1s2b protein_coding protein_coding MGP_C3HHeJ_T0072109.1 MGP_C3HHeJ_G0029391.1 mouse_genomes_project 5 88374270 88376333 + Csn1s2b protein_coding retained_intron MGP_C3HHeJ_T0004583.1 MGP_C3HHeJ_G0003964.1 mouse_genomes_project 5 29326416 29327998 - Gm15469 antisense antisense MGP_C3HHeJ_T0010656.1 MGP_C3HHeJ_G0008789.1 mouse_genomes_project 5 154028418 154028496 - miRNA miRNA MGP_C3HHeJ_T0099437.1 MGP_C3HHeJ_G0037631.1 mouse_genomes_project 5 49220411 49220518 - Gm22618 snRNA snRNA MGP_C3HHeJ_T0071185.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604050 42715715 - MGP_C3HHeJ_P0071185 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071186.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42715442 - MGP_C3HHeJ_P0071186 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071187.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42712986 - MGP_C3HHeJ_P0071187 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071188.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42715793 - MGP_C3HHeJ_P0071188 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071189.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604052 42615541 - MGP_C3HHeJ_P0071189 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071190.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604055 42708529 - MGP_C3HHeJ_P0071190 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071191.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42604055 42708529 - MGP_C3HHeJ_P0071191 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071192.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611786 42712953 - MGP_C3HHeJ_P0071192 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071193.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611949 42708474 - MGP_C3HHeJ_P0071193 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071194.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611949 42708474 - MGP_C3HHeJ_P0071194 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071195.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42611949 42708529 - MGP_C3HHeJ_P0071195 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071196.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42623364 42644342 - Prom1 protein_coding retained_intron MGP_C3HHeJ_T0071197.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42638116 42657699 - MGP_C3HHeJ_P0071197 Prom1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071198.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42641001 42656773 - Prom1 protein_coding retained_intron MGP_C3HHeJ_T0071199.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42656149 42715719 - Prom1 protein_coding retained_intron MGP_C3HHeJ_T0071200.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42659718 42680389 - Prom1 protein_coding processed_transcript MGP_C3HHeJ_T0071201.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42668200 42712947 - MGP_C3HHeJ_P0071201 Prom1 protein_coding protein_coding MGP_C3HHeJ_T0071202.1 MGP_C3HHeJ_G0029228.1 mouse_genomes_project 5 42713415 42715719 - Prom1 protein_coding processed_transcript MGP_C3HHeJ_T0073253.1 MGP_C3HHeJ_G0029642.1 mouse_genomes_project 5 117046790 117052566 - MGP_C3HHeJ_P0073253 1500011B03Rik protein_coding protein_coding MGP_C3HHeJ_T0014688.1 MGP_C3HHeJ_G0012792.1 mouse_genomes_project 5 11309206 11310170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001503.1 MGP_C3HHeJ_G0001430.1 mouse_genomes_project 5 43218743 43218882 + TEC TEC MGP_C3HHeJ_T0001461.1 MGP_C3HHeJ_G0001389.1 mouse_genomes_project 5 30377670 30380571 - TEC TEC MGP_C3HHeJ_T0001462.1 MGP_C3HHeJ_G0001389.1 mouse_genomes_project 5 30377670 30380574 - TEC TEC MGP_C3HHeJ_T0014723.1 MGP_C3HHeJ_G0012827.1 mouse_genomes_project 5 21221544 21221668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075500.1 MGP_C3HHeJ_G0030063.1 mouse_genomes_project 5 149618471 149691902 + MGP_C3HHeJ_P0075500 Cyp3a57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075501.1 MGP_C3HHeJ_G0030063.1 mouse_genomes_project 5 149618479 149692316 + MGP_C3HHeJ_P0075501 Cyp3a57 protein_coding protein_coding MGP_C3HHeJ_T0100700.1 MGP_C3HHeJ_G0038894.1 mouse_genomes_project 5 60088686 60088809 - Gm23708 snoRNA snoRNA MGP_C3HHeJ_T0004702.1 MGP_C3HHeJ_G0004054.1 mouse_genomes_project 5 112749356 112757640 + Gm15559 antisense antisense MGP_C3HHeJ_T0070741.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32126983 32172882 - MGP_C3HHeJ_P0070741 Letm1 protein_coding protein_coding MGP_C3HHeJ_T0070742.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32129844 32141614 - Letm1 protein_coding retained_intron MGP_C3HHeJ_T0070743.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32151777 32168713 - MGP_C3HHeJ_P0070743 Letm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070744.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32159427 32172779 - Letm1 protein_coding processed_transcript MGP_C3HHeJ_T0070745.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32159626 32160519 - Letm1 protein_coding processed_transcript MGP_C3HHeJ_T0070746.1 MGP_C3HHeJ_G0029152.1 mouse_genomes_project 5 32166523 32172802 - MGP_C3HHeJ_P0070746 Letm1 protein_coding protein_coding MGP_C3HHeJ_T0010585.1 MGP_C3HHeJ_G0008718.1 mouse_genomes_project 5 28810334 28810414 + Mir5625 miRNA miRNA MGP_C3HHeJ_T0070285.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28278037 28317534 - MGP_C3HHeJ_P0070285 Hadha protein_coding protein_coding MGP_C3HHeJ_T0070286.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28279159 28317348 - Hadha protein_coding processed_transcript MGP_C3HHeJ_T0070287.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28279632 28280039 - Hadha protein_coding processed_transcript MGP_C3HHeJ_T0070288.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28281202 28287609 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070289.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28287225 28296429 - MGP_C3HHeJ_P0070289 Hadha protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070290.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28289204 28302414 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070291.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28294621 28317334 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070292.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28308470 28310930 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0070293.1 MGP_C3HHeJ_G0029082.1 mouse_genomes_project 5 28316293 28317362 - Hadha protein_coding retained_intron MGP_C3HHeJ_T0014670.1 MGP_C3HHeJ_G0012774.1 mouse_genomes_project 5 3834783 3835349 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070306.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416439 28456268 + MGP_C3HHeJ_P0070306 protein_coding protein_coding MGP_C3HHeJ_T0070307.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416493 28418532 + protein_coding retained_intron MGP_C3HHeJ_T0070308.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416498 28434923 + protein_coding retained_intron MGP_C3HHeJ_T0070309.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416505 28442388 + protein_coding retained_intron MGP_C3HHeJ_T0070310.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416508 28441627 + MGP_C3HHeJ_P0070310 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070311.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28416532 28452814 + MGP_C3HHeJ_P0070311 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070312.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28446914 28450834 + protein_coding retained_intron MGP_C3HHeJ_T0070313.1 MGP_C3HHeJ_G0029085.1 mouse_genomes_project 5 28447394 28451088 + protein_coding processed_transcript MGP_C3HHeJ_T0010592.1 MGP_C3HHeJ_G0008725.1 mouse_genomes_project 5 40514149 40514231 + Mir6414 miRNA miRNA MGP_C3HHeJ_T0001475.1 MGP_C3HHeJ_G0001402.1 mouse_genomes_project 5 33850109 33850564 + TEC TEC MGP_C3HHeJ_T0014759.1 MGP_C3HHeJ_G0012863.1 mouse_genomes_project 5 31481842 31482302 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001492.1 MGP_C3HHeJ_G0001419.1 mouse_genomes_project 5 42377387 42380486 + TEC TEC MGP_C3HHeJ_T0004767.1 MGP_C3HHeJ_G0004098.1 mouse_genomes_project 5 128103924 128107443 + Gm42839 antisense antisense MGP_C3HHeJ_T0100691.1 MGP_C3HHeJ_G0038885.1 mouse_genomes_project 5 20119051 20119165 - Gm25459 snoRNA snoRNA MGP_C3HHeJ_T0015005.1 MGP_C3HHeJ_G0013109.1 mouse_genomes_project 5 147030334 147030918 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008034.1 MGP_C3HHeJ_G0006541.1 mouse_genomes_project 5 41640700 41645025 - Gm42711 lincRNA lincRNA MGP_C3HHeJ_T0001536.1 MGP_C3HHeJ_G0001462.1 mouse_genomes_project 5 47927735 47929067 - TEC TEC MGP_C3HHeJ_T0004568.1 MGP_C3HHeJ_G0003952.1 mouse_genomes_project 5 19660365 19706535 + Gm10475 antisense antisense MGP_C3HHeJ_T0070198.1 MGP_C3HHeJ_G0029062.1 mouse_genomes_project 5 24302684 24304593 + MGP_C3HHeJ_P0070198 protein_coding protein_coding MGP_C3HHeJ_T0073492.1 MGP_C3HHeJ_G0029688.1 mouse_genomes_project 5 120543386 120640281 - MGP_C3HHeJ_P0073492 Fbxw8 protein_coding protein_coding MGP_C3HHeJ_T0073493.1 MGP_C3HHeJ_G0029688.1 mouse_genomes_project 5 120555476 120640243 - Fbxw8 protein_coding retained_intron MGP_C3HHeJ_T0071078.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36696062 36712507 - Zbtb49 protein_coding processed_transcript MGP_C3HHeJ_T0071079.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706403 36726776 - MGP_C3HHeJ_P0071079 Zbtb49 protein_coding protein_coding MGP_C3HHeJ_T0071080.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706568 36726732 - MGP_C3HHeJ_P0071080 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071081.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706571 36726744 - MGP_C3HHeJ_P0071081 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071082.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706956 36726744 - MGP_C3HHeJ_P0071082 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071083.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36706956 36726746 - MGP_C3HHeJ_P0071083 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071084.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36709569 36710119 - MGP_C3HHeJ_P0071084 Zbtb49 protein_coding protein_coding MGP_C3HHeJ_T0071085.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36710070 36719871 - MGP_C3HHeJ_P0071085 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071086.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36710126 36726750 - MGP_C3HHeJ_P0071086 Zbtb49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071087.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36718356 36726773 - MGP_C3HHeJ_P0071087 Zbtb49 protein_coding protein_coding MGP_C3HHeJ_T0071088.1 MGP_C3HHeJ_G0029207.1 mouse_genomes_project 5 36721697 36726743 - Zbtb49 protein_coding retained_intron MGP_C3HHeJ_T0070589.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29844093 29902867 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070590.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29845904 29870012 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070591.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860909 29870012 + MGP_C3HHeJ_P0070591 Mrpl33 protein_coding protein_coding MGP_C3HHeJ_T0070592.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860926 29889762 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070593.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860942 29902867 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070594.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860955 29913236 + MGP_C3HHeJ_P0070594 Mrpl33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070595.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860983 29870010 + Mrpl33 protein_coding retained_intron MGP_C3HHeJ_T0070596.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29860987 29870005 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070597.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29861122 29869940 + Mrpl33 protein_coding retained_intron MGP_C3HHeJ_T0070600.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29902630 29906136 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0070601.1 MGP_C3HHeJ_G0029128.1 mouse_genomes_project 5 29903501 29912283 + Mrpl33 protein_coding processed_transcript MGP_C3HHeJ_T0014816.1 MGP_C3HHeJ_G0012920.1 mouse_genomes_project 5 59938227 59938649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001436.1 MGP_C3HHeJ_G0001366.1 mouse_genomes_project 5 19708615 19710512 - TEC TEC MGP_C3HHeJ_T0008258.1 MGP_C3HHeJ_G0006707.1 mouse_genomes_project 5 122382314 122384869 - 1700021F13Rik lincRNA lincRNA MGP_C3HHeJ_T0008259.1 MGP_C3HHeJ_G0006707.1 mouse_genomes_project 5 122382318 122384667 - 1700021F13Rik lincRNA lincRNA MGP_C3HHeJ_T0001639.1 MGP_C3HHeJ_G0001564.1 mouse_genomes_project 5 68934304 68937162 - TEC TEC MGP_C3HHeJ_T0075390.1 MGP_C3HHeJ_G0030041.1 mouse_genomes_project 5 148219599 148226395 - MGP_C3HHeJ_P0075390 Ocm protein_coding protein_coding MGP_C3HHeJ_T0075391.1 MGP_C3HHeJ_G0030041.1 mouse_genomes_project 5 148219871 148225502 - MGP_C3HHeJ_P0075391 Ocm protein_coding protein_coding MGP_C3HHeJ_T0075392.1 MGP_C3HHeJ_G0030041.1 mouse_genomes_project 5 148224235 148226466 - MGP_C3HHeJ_P0075392 Ocm protein_coding protein_coding MGP_C3HHeJ_T0014932.1 MGP_C3HHeJ_G0013036.1 mouse_genomes_project 5 110795336 110798435 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099445.1 MGP_C3HHeJ_G0037639.1 mouse_genomes_project 5 69924558 69924620 - Gm23067 snRNA snRNA MGP_C3HHeJ_T0008242.1 MGP_C3HHeJ_G0006693.1 mouse_genomes_project 5 119039868 119243036 - Gm43122 lincRNA lincRNA MGP_C3HHeJ_T0008244.1 MGP_C3HHeJ_G0006693.1 mouse_genomes_project 5 119230753 119243070 - Gm43122 lincRNA lincRNA MGP_C3HHeJ_T0073337.1 MGP_C3HHeJ_G0029663.1 mouse_genomes_project 5 117651305 117655023 - MGP_C3HHeJ_P0073337 Cox6a1 protein_coding protein_coding MGP_C3HHeJ_T0073338.1 MGP_C3HHeJ_G0029663.1 mouse_genomes_project 5 117651320 117654956 - Cox6a1 protein_coding retained_intron MGP_C3HHeJ_T0001581.1 MGP_C3HHeJ_G0001507.1 mouse_genomes_project 5 57331148 57332890 + TEC TEC MGP_C3HHeJ_T0014888.1 MGP_C3HHeJ_G0012992.1 mouse_genomes_project 5 92569921 92570416 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014899.1 MGP_C3HHeJ_G0013003.1 mouse_genomes_project 5 100820407 100821216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001731.1 MGP_C3HHeJ_G0001655.1 mouse_genomes_project 5 115229821 115230202 + TEC TEC MGP_C3HHeJ_T0072039.1 MGP_C3HHeJ_G0029373.1 mouse_genomes_project 5 87222410 87265626 - MGP_C3HHeJ_P0072039 Tmprss11e protein_coding protein_coding MGP_C3HHeJ_T0001651.1 MGP_C3HHeJ_G0001575.1 mouse_genomes_project 5 73120170 73122645 - TEC TEC MGP_C3HHeJ_T0099419.1 MGP_C3HHeJ_G0037613.1 mouse_genomes_project 5 17133544 17133647 - Gm25335 snRNA snRNA MGP_C3HHeJ_T0075554.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151696943 151698978 + MGP_C3HHeJ_P0075554 Polr1d protein_coding protein_coding MGP_C3HHeJ_T0075555.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151697240 151731383 + MGP_C3HHeJ_P0075555 Polr1d protein_coding protein_coding MGP_C3HHeJ_T0075556.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151697442 151731619 + MGP_C3HHeJ_P0075556 Polr1d protein_coding protein_coding MGP_C3HHeJ_T0075557.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151697458 151731596 + MGP_C3HHeJ_P0075557 Polr1d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075558.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151721171 151730892 + Polr1d protein_coding retained_intron MGP_C3HHeJ_T0075559.1 MGP_C3HHeJ_G0030080.1 mouse_genomes_project 5 151725390 151731008 + Polr1d protein_coding processed_transcript MGP_C3HHeJ_T0007973.1 MGP_C3HHeJ_G0006503.1 mouse_genomes_project 5 21165089 21189158 - lincRNA lincRNA MGP_C3HHeJ_T0070565.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727650 29756697 + MGP_C3HHeJ_P0070565 Gpn1 protein_coding protein_coding MGP_C3HHeJ_T0070566.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727661 29737984 + Gpn1 protein_coding retained_intron MGP_C3HHeJ_T0070567.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727662 29730626 + MGP_C3HHeJ_P0070567 Gpn1 protein_coding protein_coding MGP_C3HHeJ_T0070568.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727676 29732243 + MGP_C3HHeJ_P0070568 Gpn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070569.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727703 29738490 + Gpn1 protein_coding retained_intron MGP_C3HHeJ_T0070570.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29727910 29730234 + Gpn1 protein_coding processed_transcript MGP_C3HHeJ_T0070571.1 MGP_C3HHeJ_G0029125.1 mouse_genomes_project 5 29750844 29754643 + Gpn1 protein_coding retained_intron MGP_C3HHeJ_T0072899.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130404 112180555 + MGP_C3HHeJ_P0072899 Golga3 protein_coding protein_coding MGP_C3HHeJ_T0072900.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130560 112141597 + Golga3 protein_coding retained_intron MGP_C3HHeJ_T0072901.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130582 112139664 + MGP_C3HHeJ_P0072901 Golga3 protein_coding protein_coding MGP_C3HHeJ_T0072902.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130582 112177270 + MGP_C3HHeJ_P0072902 Golga3 protein_coding protein_coding MGP_C3HHeJ_T0072903.1 MGP_C3HHeJ_G0029577.1 mouse_genomes_project 5 112130600 112143510 + Golga3 protein_coding retained_intron MGP_C3HHeJ_T0072211.1 MGP_C3HHeJ_G0029425.1 mouse_genomes_project 5 91505069 91507190 + Cxcl5 protein_coding retained_intron MGP_C3HHeJ_T0072212.1 MGP_C3HHeJ_G0029425.1 mouse_genomes_project 5 91505087 91507190 + MGP_C3HHeJ_P0072212 Cxcl5 protein_coding protein_coding MGP_C3HHeJ_T0014803.1 MGP_C3HHeJ_G0012907.1 mouse_genomes_project 5 55335150 55335463 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071719.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546383 72594490 - MGP_C3HHeJ_P0071719 Txk protein_coding protein_coding MGP_C3HHeJ_T0071720.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546383 72609955 - MGP_C3HHeJ_P0071720 Txk protein_coding protein_coding MGP_C3HHeJ_T0071721.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546383 72609959 - MGP_C3HHeJ_P0071721 Txk protein_coding protein_coding MGP_C3HHeJ_T0071722.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546385 72609955 - MGP_C3HHeJ_P0071722 Txk protein_coding protein_coding MGP_C3HHeJ_T0071723.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546391 72593794 - Txk protein_coding processed_transcript MGP_C3HHeJ_T0071724.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72546391 72593794 - Txk protein_coding processed_transcript MGP_C3HHeJ_T0071725.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72553585 72609956 - Txk protein_coding retained_intron MGP_C3HHeJ_T0071726.1 MGP_C3HHeJ_G0029317.1 mouse_genomes_project 5 72605737 72609952 - Txk protein_coding retained_intron MGP_C3HHeJ_T0072733.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405332 109414456 - MGP_C3HHeJ_P0072733 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072734.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405332 109412992 - MGP_C3HHeJ_P0072734 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072735.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405341 109414456 - MGP_C3HHeJ_P0072735 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072736.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109405899 109412610 - MGP_C3HHeJ_P0072736 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0072737.1 MGP_C3HHeJ_G0029542.1 mouse_genomes_project 5 109410249 109414687 - MGP_C3HHeJ_P0072737 Gfi1 protein_coding protein_coding MGP_C3HHeJ_T0008049.1 MGP_C3HHeJ_G0006555.1 mouse_genomes_project 5 51214999 51232169 - C130083M11Rik lincRNA lincRNA MGP_C3HHeJ_T0001730.1 MGP_C3HHeJ_G0001654.1 mouse_genomes_project 5 115204123 115206015 - TEC TEC MGP_C3HHeJ_T0004595.1 MGP_C3HHeJ_G0003975.1 mouse_genomes_project 5 34037244 34045351 - 4931431C16Rik antisense antisense MGP_C3HHeJ_T0070869.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33082642 33180632 + MGP_C3HHeJ_P0070869 Grk4 protein_coding protein_coding MGP_C3HHeJ_T0070870.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33083238 33098895 + MGP_C3HHeJ_P0070870 Grk4 protein_coding protein_coding MGP_C3HHeJ_T0070871.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33139472 33169561 + Grk4 protein_coding processed_transcript MGP_C3HHeJ_T0070872.1 MGP_C3HHeJ_G0029169.1 mouse_genomes_project 5 33168666 33180634 + Grk4 protein_coding processed_transcript MGP_C3HHeJ_T0072137.1 MGP_C3HHeJ_G0029408.1 mouse_genomes_project 5 89203309 89204938 + MGP_C3HHeJ_P0072137 Utp3 protein_coding protein_coding MGP_C3HHeJ_T0071089.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726800 36737063 + MGP_C3HHeJ_P0071089 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071090.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726838 36734275 + MGP_C3HHeJ_P0071090 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071091.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726845 36737064 + MGP_C3HHeJ_P0071091 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071092.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726847 36737348 + MGP_C3HHeJ_P0071092 Lyar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071093.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726868 36732273 + MGP_C3HHeJ_P0071093 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071094.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726872 36734459 + MGP_C3HHeJ_P0071094 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071095.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36726912 36740665 + MGP_C3HHeJ_P0071095 Lyar protein_coding protein_coding MGP_C3HHeJ_T0071096.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36729323 36737043 + MGP_C3HHeJ_P0071096 Lyar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071097.1 MGP_C3HHeJ_G0029208.1 mouse_genomes_project 5 36731007 36732820 + Lyar protein_coding retained_intron MGP_C3HHeJ_T0071211.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097689 43448240 - MGP_C3HHeJ_P0071211 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071212.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097689 43448281 - MGP_C3HHeJ_P0071212 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071213.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097689 43448220 - MGP_C3HHeJ_P0071213 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071214.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43097697 43448203 - MGP_C3HHeJ_P0071214 Ldb2 protein_coding protein_coding MGP_C3HHeJ_T0071215.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43105349 43229277 - Ldb2 protein_coding processed_transcript MGP_C3HHeJ_T0071216.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43159025 43167925 - Ldb2 protein_coding processed_transcript MGP_C3HHeJ_T0071217.1 MGP_C3HHeJ_G0029230.1 mouse_genomes_project 5 43174499 43448253 - Ldb2 protein_coding retained_intron MGP_C3HHeJ_T0014665.1 MGP_C3HHeJ_G0012769.1 mouse_genomes_project 5 899207 900916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014726.1 MGP_C3HHeJ_G0012830.1 mouse_genomes_project 5 22024185 22024670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008367.1 MGP_C3HHeJ_G0006782.1 mouse_genomes_project 5 153698042 153699458 + 8430423G03Rik lincRNA lincRNA MGP_C3HHeJ_T0004811.1 MGP_C3HHeJ_G0004129.1 mouse_genomes_project 5 147610593 147623633 - Gm20635 antisense antisense MGP_C3HHeJ_T0075756.1 MGP_C3HHeJ_G0030113.1 mouse_genomes_project 5 156458944 156481240 - MGP_C3HHeJ_P0075756 Vmn2r18 protein_coding protein_coding MGP_C3HHeJ_T0102052.1 MGP_C3HHeJ_G0040017.1 mouse_genomes_project 5 128916536 128917201 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101213.1 MGP_C3HHeJ_G0039348.1 mouse_genomes_project 5 21730234 21731953 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0102036.1 MGP_C3HHeJ_G0040001.1 mouse_genomes_project 5 87504356 87519262 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011492.1 MGP_C3HHeJ_G0009625.1 mouse_genomes_project 5 6159100 6159242 - Gm27941 misc_RNA misc_RNA MGP_C3HHeJ_T0008221.1 MGP_C3HHeJ_G0006678.1 mouse_genomes_project 5 114714809 114717560 + Gm42864 lincRNA lincRNA MGP_C3HHeJ_T0072122.1 MGP_C3HHeJ_G0029397.1 mouse_genomes_project 5 88546283 88548389 + MGP_C3HHeJ_P0072122 Cabs1 protein_coding protein_coding MGP_C3HHeJ_T0070797.1 MGP_C3HHeJ_G0029161.1 mouse_genomes_project 5 32701990 32737125 + MGP_C3HHeJ_P0070797 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0010634.1 MGP_C3HHeJ_G0008767.1 mouse_genomes_project 5 137946407 137946446 + Mir7228 miRNA miRNA MGP_C3HHeJ_T0004791.1 MGP_C3HHeJ_G0004117.1 mouse_genomes_project 5 141164206 141173741 + Gm17112 antisense antisense MGP_C3HHeJ_T0075471.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428261 149444035 + MGP_C3HHeJ_P0075471 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075472.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428272 149444035 + MGP_C3HHeJ_P0075472 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075473.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428295 149444034 + MGP_C3HHeJ_P0075473 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075474.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428302 149443747 + MGP_C3HHeJ_P0075474 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075475.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428319 149443226 + MGP_C3HHeJ_P0075475 Cpsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075476.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149428506 149443347 + MGP_C3HHeJ_P0075476 Cpsf4 protein_coding protein_coding MGP_C3HHeJ_T0075477.1 MGP_C3HHeJ_G0030057.1 mouse_genomes_project 5 149432588 149444035 + Cpsf4 protein_coding retained_intron MGP_C3HHeJ_T0014789.1 MGP_C3HHeJ_G0012893.1 mouse_genomes_project 5 48354523 48354836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008321.1 MGP_C3HHeJ_G0006742.1 mouse_genomes_project 5 135812961 135814122 + Gm28616 lincRNA lincRNA MGP_C3HHeJ_T0100733.1 MGP_C3HHeJ_G0038927.1 mouse_genomes_project 5 151416166 151416295 + Gm23202 snoRNA snoRNA MGP_C3HHeJ_T0071859.1 MGP_C3HHeJ_G0029339.1 mouse_genomes_project 5 75965055 76011465 - MGP_C3HHeJ_P0071859 Kdr protein_coding protein_coding MGP_C3HHeJ_T0071860.1 MGP_C3HHeJ_G0029339.1 mouse_genomes_project 5 75990392 76011465 - Kdr protein_coding retained_intron MGP_C3HHeJ_T0071861.1 MGP_C3HHeJ_G0029339.1 mouse_genomes_project 5 75994271 76011465 - Kdr protein_coding retained_intron MGP_C3HHeJ_T0001742.1 MGP_C3HHeJ_G0001666.1 mouse_genomes_project 5 118229958 118232242 + TEC TEC MGP_C3HHeJ_T0072164.1 MGP_C3HHeJ_G0029414.1 mouse_genomes_project 5 90077261 90116223 - MGP_C3HHeJ_P0072164 Gc protein_coding protein_coding MGP_C3HHeJ_T0072165.1 MGP_C3HHeJ_G0029414.1 mouse_genomes_project 5 90082556 90089344 - MGP_C3HHeJ_P0072165 Gc protein_coding protein_coding MGP_C3HHeJ_T0014695.1 MGP_C3HHeJ_G0012799.1 mouse_genomes_project 5 15926462 15926922 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008241.1 MGP_C3HHeJ_G0006692.1 mouse_genomes_project 5 118776932 118779055 - 4930562A09Rik lincRNA lincRNA MGP_C3HHeJ_T0010581.1 MGP_C3HHeJ_G0008714.1 mouse_genomes_project 5 21086302 21086348 - Gm28022 miRNA miRNA MGP_C3HHeJ_T0073728.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 124996547 125036870 - MGP_C3HHeJ_P0073728 Ccdc63 protein_coding protein_coding MGP_C3HHeJ_T0073729.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 124996577 125001288 - Ccdc63 protein_coding retained_intron MGP_C3HHeJ_T0073730.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 124996592 125033623 - MGP_C3HHeJ_P0073730 Ccdc63 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073731.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125021885 125030108 - MGP_C3HHeJ_P0073731 Ccdc63 protein_coding protein_coding MGP_C3HHeJ_T0073732.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125028002 125030108 - MGP_C3HHeJ_P0073732 Ccdc63 protein_coding protein_coding MGP_C3HHeJ_T0073733.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125033243 125037765 - Ccdc63 protein_coding retained_intron MGP_C3HHeJ_T0073734.1 MGP_C3HHeJ_G0029735.1 mouse_genomes_project 5 125034926 125040385 - Ccdc63 protein_coding retained_intron MGP_C3HHeJ_T0070208.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25830314 25885233 - MGP_C3HHeJ_P0070208 Paxip1 protein_coding protein_coding MGP_C3HHeJ_T0070209.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25834309 25844513 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0070210.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25853347 25859349 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0070211.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25866089 25885078 - MGP_C3HHeJ_P0070211 Paxip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070212.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25875094 25885374 - Paxip1 protein_coding processed_transcript MGP_C3HHeJ_T0070213.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25877225 25885066 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0070214.1 MGP_C3HHeJ_G0029064.1 mouse_genomes_project 5 25880191 25884047 - Paxip1 protein_coding retained_intron MGP_C3HHeJ_T0071495.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093615 65157984 + MGP_C3HHeJ_P0071495 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071496.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093637 65161166 + MGP_C3HHeJ_P0071496 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071497.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093645 65157984 + MGP_C3HHeJ_P0071497 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071498.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093688 65157374 + MGP_C3HHeJ_P0071498 Ube2k protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071499.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65093838 65158257 + MGP_C3HHeJ_P0071499 Ube2k protein_coding protein_coding MGP_C3HHeJ_T0071500.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65131055 65133722 + Ube2k protein_coding retained_intron MGP_C3HHeJ_T0071501.1 MGP_C3HHeJ_G0029281.1 mouse_genomes_project 5 65153824 65157374 + Ube2k protein_coding retained_intron MGP_C3HHeJ_T0075162.1 MGP_C3HHeJ_G0029990.1 mouse_genomes_project 5 143793039 143796326 - MGP_C3HHeJ_P0075162 Psmg3 protein_coding protein_coding MGP_C3HHeJ_T0075163.1 MGP_C3HHeJ_G0029990.1 mouse_genomes_project 5 143793060 143796284 - MGP_C3HHeJ_P0075163 Psmg3 protein_coding protein_coding MGP_C3HHeJ_T0075164.1 MGP_C3HHeJ_G0029990.1 mouse_genomes_project 5 143793915 143796316 - Psmg3 protein_coding retained_intron MGP_C3HHeJ_T0008046.1 MGP_C3HHeJ_G0006552.1 mouse_genomes_project 5 49083441 49088085 + 4930448I18Rik lincRNA lincRNA MGP_C3HHeJ_T0001665.1 MGP_C3HHeJ_G0001589.1 mouse_genomes_project 5 75161500 75161930 - TEC TEC MGP_C3HHeJ_T0014909.1 MGP_C3HHeJ_G0013013.1 mouse_genomes_project 5 104620315 104620903 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072648.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474947 107513126 + MGP_C3HHeJ_P0072648 Zfp326 protein_coding protein_coding MGP_C3HHeJ_T0072649.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474950 107514164 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072650.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474950 107486404 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072651.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474950 107514164 + MGP_C3HHeJ_P0072651 Zfp326 protein_coding protein_coding MGP_C3HHeJ_T0072652.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107474958 107513523 + MGP_C3HHeJ_P0072652 Zfp326 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072653.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107475323 107484567 + Zfp326 protein_coding processed_transcript MGP_C3HHeJ_T0072654.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107477152 107505912 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072655.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107489324 107494838 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072656.1 MGP_C3HHeJ_G0029526.1 mouse_genomes_project 5 107503250 107506325 + Zfp326 protein_coding retained_intron MGP_C3HHeJ_T0072658.1 MGP_C3HHeJ_G0029528.1 mouse_genomes_project 5 108259725 108259829 + MGP_C3HHeJ_P0072658 Gm17304 protein_coding protein_coding MGP_C3HHeJ_T0069631.1 MGP_C3HHeJ_G0028962.1 mouse_genomes_project 5 496867 505504 - MGP_C3HHeJ_P0069631 Gatad1 protein_coding protein_coding MGP_C3HHeJ_T0069635.1 MGP_C3HHeJ_G0028962.1 mouse_genomes_project 5 505354 511582 - MGP_C3HHeJ_P0069635 Gatad1 protein_coding protein_coding MGP_C3HHeJ_T0069636.1 MGP_C3HHeJ_G0028962.1 mouse_genomes_project 5 507041 511769 - MGP_C3HHeJ_P0069636 Gatad1 protein_coding protein_coding MGP_C3HHeJ_T0098492.1 MGP_C3HHeJ_G0036697.1 mouse_genomes_project 5 42476382 42477657 + Gm16014 sense_intronic sense_intronic MGP_C3HHeJ_T0008083.1 MGP_C3HHeJ_G0006582.1 mouse_genomes_project 5 74058235 74060590 + Dancr lincRNA lincRNA MGP_C3HHeJ_T0008084.1 MGP_C3HHeJ_G0006582.1 mouse_genomes_project 5 74058235 74060591 + Dancr lincRNA lincRNA MGP_C3HHeJ_T0074545.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138520066 138555591 + Mlxipl protein_coding processed_transcript MGP_C3HHeJ_T0074546.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538086 138557766 + Mlxipl protein_coding retained_intron MGP_C3HHeJ_T0074547.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538097 138558417 + MGP_C3HHeJ_P0074547 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0074548.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538099 138573268 + MGP_C3HHeJ_P0074548 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074549.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538108 138573268 + MGP_C3HHeJ_P0074549 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074550.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538108 138573268 + MGP_C3HHeJ_P0074550 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074551.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538108 138573268 + MGP_C3HHeJ_P0074551 Mlxipl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074552.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138538113 138573728 + MGP_C3HHeJ_P0074552 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0074553.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138568955 138569956 + MGP_C3HHeJ_P0074553 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0074554.1 MGP_C3HHeJ_G0029868.1 mouse_genomes_project 5 138568976 138571084 + MGP_C3HHeJ_P0074554 Mlxipl protein_coding protein_coding MGP_C3HHeJ_T0073015.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114327547 114368533 + MGP_C3HHeJ_P0073015 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073016.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114327560 114362280 + Tpst2 protein_coding retained_intron MGP_C3HHeJ_T0073017.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114327563 114368527 + MGP_C3HHeJ_P0073017 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073018.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114339599 114360980 + MGP_C3HHeJ_P0073018 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073019.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114357137 114368129 + MGP_C3HHeJ_P0073019 Tpst2 protein_coding protein_coding MGP_C3HHeJ_T0073020.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114361534 114363060 + MGP_C3HHeJ_P0073020 Tpst2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073021.1 MGP_C3HHeJ_G0029599.1 mouse_genomes_project 5 114366067 114368136 + Tpst2 protein_coding retained_intron MGP_C3HHeJ_T0072858.1 MGP_C3HHeJ_G0029565.1 mouse_genomes_project 5 110891519 110902408 - MGP_C3HHeJ_P0072858 protein_coding protein_coding MGP_C3HHeJ_T0004724.1 MGP_C3HHeJ_G0004070.1 mouse_genomes_project 5 118827190 118857870 + Srrm4os antisense antisense MGP_C3HHeJ_T0004725.1 MGP_C3HHeJ_G0004070.1 mouse_genomes_project 5 118827190 118854481 + Srrm4os antisense antisense MGP_C3HHeJ_T0001484.1 MGP_C3HHeJ_G0001411.1 mouse_genomes_project 5 38147576 38150994 - TEC TEC MGP_C3HHeJ_T0015012.1 MGP_C3HHeJ_G0013116.1 mouse_genomes_project 5 148954593 148954764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008325.1 MGP_C3HHeJ_G0006746.1 mouse_genomes_project 5 138337541 138338394 + 4933439J24Rik lincRNA lincRNA MGP_C3HHeJ_T0008351.1 MGP_C3HHeJ_G0006767.1 mouse_genomes_project 5 148008440 148012124 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0015034.1 MGP_C3HHeJ_G0013138.1 mouse_genomes_project 5 154468692 154469151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004762.1 MGP_C3HHeJ_G0004094.1 mouse_genomes_project 5 127272735 127273447 + Gm42425 antisense antisense MGP_C3HHeJ_T0098484.1 MGP_C3HHeJ_G0036689.1 mouse_genomes_project 5 1863429 1865348 - Gm43111 sense_intronic sense_intronic MGP_C3HHeJ_T0001473.1 MGP_C3HHeJ_G0001400.1 mouse_genomes_project 5 32995498 32995967 + TEC TEC MGP_C3HHeJ_T0001570.1 MGP_C3HHeJ_G0001496.1 mouse_genomes_project 5 56986409 56988990 + TEC TEC MGP_C3HHeJ_T0004564.1 MGP_C3HHeJ_G0003949.1 mouse_genomes_project 5 13486893 13490776 - Gm43000 antisense antisense MGP_C3HHeJ_T0100723.1 MGP_C3HHeJ_G0038917.1 mouse_genomes_project 5 109618001 109618133 + Gm22270 snoRNA snoRNA MGP_C3HHeJ_T0001549.1 MGP_C3HHeJ_G0001475.1 mouse_genomes_project 5 49804688 49807129 + TEC TEC MGP_C3HHeJ_T0015040.1 MGP_C3HHeJ_G0013144.1 mouse_genomes_project 5 156174988 156175512 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073299.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465396 117492916 - MGP_C3HHeJ_P0073299 Cabp1 protein_coding protein_coding MGP_C3HHeJ_T0073300.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465396 117484841 - MGP_C3HHeJ_P0073300 Cabp1 protein_coding protein_coding MGP_C3HHeJ_T0073301.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465420 117479951 - Cabp1 protein_coding processed_transcript MGP_C3HHeJ_T0073302.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465652 117484651 - MGP_C3HHeJ_P0073302 Cabp1 protein_coding protein_coding MGP_C3HHeJ_T0073303.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117465677 117484588 - MGP_C3HHeJ_P0073303 Cabp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073304.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117470535 117479788 - Cabp1 protein_coding retained_intron MGP_C3HHeJ_T0073305.1 MGP_C3HHeJ_G0029655.1 mouse_genomes_project 5 117478765 117482673 - Cabp1 protein_coding retained_intron MGP_C3HHeJ_T0072191.1 MGP_C3HHeJ_G0029419.1 mouse_genomes_project 5 91095171 91096457 + MGP_C3HHeJ_P0072191 Gm9958 protein_coding protein_coding MGP_C3HHeJ_T0001482.1 MGP_C3HHeJ_G0001409.1 mouse_genomes_project 5 36640997 36642405 - TEC TEC MGP_C3HHeJ_T0000002.1 MGP_C3HHeJ_G0000002.1 mouse_genomes_project 5 18345552 18349328 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C3HHeJ_T0000003.1 MGP_C3HHeJ_G0000002.1 mouse_genomes_project 5 18345552 18349325 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C3HHeJ_T0001493.1 MGP_C3HHeJ_G0001420.1 mouse_genomes_project 5 42379761 42381833 - TEC TEC MGP_C3HHeJ_T0075457.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149385371 149398709 - MGP_C3HHeJ_P0075457 Pdap1 protein_coding protein_coding MGP_C3HHeJ_T0075458.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149387655 149395167 - Pdap1 protein_coding processed_transcript MGP_C3HHeJ_T0075459.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149388942 149393044 - Pdap1 protein_coding retained_intron MGP_C3HHeJ_T0075460.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149390746 149393198 - Pdap1 protein_coding retained_intron MGP_C3HHeJ_T0075461.1 MGP_C3HHeJ_G0030054.1 mouse_genomes_project 5 149395048 149398469 - Pdap1 protein_coding retained_intron MGP_C3HHeJ_T0072271.1 MGP_C3HHeJ_G0029444.1 mouse_genomes_project 5 93028642 93062463 - MGP_C3HHeJ_P0072271 Ppef2 protein_coding protein_coding MGP_C3HHeJ_T0072272.1 MGP_C3HHeJ_G0029444.1 mouse_genomes_project 5 93028652 93030986 - Ppef2 protein_coding processed_transcript MGP_C3HHeJ_T0072273.1 MGP_C3HHeJ_G0029444.1 mouse_genomes_project 5 93028937 93059351 - MGP_C3HHeJ_P0072273 Ppef2 protein_coding protein_coding MGP_C3HHeJ_T0102041.1 MGP_C3HHeJ_G0040006.1 mouse_genomes_project 5 87854206 87875725 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010616.1 MGP_C3HHeJ_G0008749.1 mouse_genomes_project 5 108543564 108543649 - Gm27527 miRNA miRNA MGP_C3HHeJ_T0001843.1 MGP_C3HHeJ_G0001765.1 mouse_genomes_project 5 138347601 138349223 - TEC TEC MGP_C3HHeJ_T0014939.1 MGP_C3HHeJ_G0013043.1 mouse_genomes_project 5 111638646 111639015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001430.1 MGP_C3HHeJ_G0001360.1 mouse_genomes_project 5 14103629 14104622 + TEC TEC MGP_C3HHeJ_T0071400.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63110828 63270021 + Nwd2 protein_coding retained_intron MGP_C3HHeJ_T0071401.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63110834 63291471 + MGP_C3HHeJ_P0071401 Nwd2 protein_coding protein_coding MGP_C3HHeJ_T0071402.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63111059 63281561 + MGP_C3HHeJ_P0071402 Nwd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071403.1 MGP_C3HHeJ_G0029262.1 mouse_genomes_project 5 63281375 63291471 + MGP_C3HHeJ_P0071403 Nwd2 protein_coding protein_coding MGP_C3HHeJ_T0017943.1 MGP_C3HHeJ_G0015366.1 mouse_genomes_project 5 76364348 76374997 + 4930432L08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0102035.1 MGP_C3HHeJ_G0040000.1 mouse_genomes_project 5 87388500 87392177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001717.1 MGP_C3HHeJ_G0001641.1 mouse_genomes_project 5 110090229 110091609 - TEC TEC MGP_C3HHeJ_T0072759.1 MGP_C3HHeJ_G0029546.1 mouse_genomes_project 5 109623075 109705306 - MGP_C3HHeJ_P0072759 Fam69a protein_coding protein_coding MGP_C3HHeJ_T0072760.1 MGP_C3HHeJ_G0029546.1 mouse_genomes_project 5 109624725 109705254 - MGP_C3HHeJ_P0072760 Fam69a protein_coding protein_coding MGP_C3HHeJ_T0072761.1 MGP_C3HHeJ_G0029546.1 mouse_genomes_project 5 109629348 109690573 - MGP_C3HHeJ_P0072761 Fam69a protein_coding protein_coding MGP_C3HHeJ_T0010641.1 MGP_C3HHeJ_G0008774.1 mouse_genomes_project 5 140903571 140903668 + Mir8116 miRNA miRNA MGP_C3HHeJ_T0072012.1 MGP_C3HHeJ_G0029363.1 mouse_genomes_project 5 86529538 86595088 - MGP_C3HHeJ_P0072012 Cenpc1 protein_coding protein_coding MGP_C3HHeJ_T0072013.1 MGP_C3HHeJ_G0029363.1 mouse_genomes_project 5 86569591 86595052 - Cenpc1 protein_coding retained_intron MGP_C3HHeJ_T0072014.1 MGP_C3HHeJ_G0029363.1 mouse_genomes_project 5 86584124 86595027 - Cenpc1 protein_coding retained_intron MGP_C3HHeJ_T0073154.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116246013 116273318 + Usp30 protein_coding processed_transcript MGP_C3HHeJ_T0073155.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116246066 116289581 + MGP_C3HHeJ_P0073155 Usp30 protein_coding protein_coding MGP_C3HHeJ_T0073156.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116246302 116270833 + Usp30 protein_coding processed_transcript MGP_C3HHeJ_T0073157.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116284076 116308491 + MGP_C3HHeJ_P0073157 Usp30 protein_coding protein_coding MGP_C3HHeJ_T0073158.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116284121 116304868 + MGP_C3HHeJ_P0073158 Usp30 protein_coding protein_coding MGP_C3HHeJ_T0073159.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116287473 116296050 + Usp30 protein_coding retained_intron MGP_C3HHeJ_T0073160.1 MGP_C3HHeJ_G0029626.1 mouse_genomes_project 5 116294859 116295379 + Usp30 protein_coding retained_intron MGP_C3HHeJ_T0001403.1 MGP_C3HHeJ_G0001333.1 mouse_genomes_project 5 5458124 5460188 - TEC TEC MGP_C3HHeJ_T0001539.1 MGP_C3HHeJ_G0001465.1 mouse_genomes_project 5 47981404 47982036 - TEC TEC MGP_C3HHeJ_T0069642.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 555480 673529 - MGP_C3HHeJ_P0069642 Ankib1 protein_coding protein_coding MGP_C3HHeJ_T0069643.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 558949 568175 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0069644.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 559360 667609 - MGP_C3HHeJ_P0069644 Ankib1 protein_coding protein_coding MGP_C3HHeJ_T0069645.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 560281 560710 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0069646.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 566031 567912 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0069647.1 MGP_C3HHeJ_G0028964.1 mouse_genomes_project 5 605106 673391 - Ankib1 protein_coding retained_intron MGP_C3HHeJ_T0099455.1 MGP_C3HHeJ_G0037649.1 mouse_genomes_project 5 84124773 84124895 - Gm25806 snRNA snRNA MGP_C3HHeJ_T0004802.1 MGP_C3HHeJ_G0004123.1 mouse_genomes_project 5 144062058 144074235 + Gm16122 antisense antisense MGP_C3HHeJ_T0098486.1 MGP_C3HHeJ_G0036691.1 mouse_genomes_project 5 2339090 2341719 - Gm43727 sense_intronic sense_intronic MGP_C3HHeJ_T0001420.1 MGP_C3HHeJ_G0001350.1 mouse_genomes_project 5 11464675 11466549 + TEC TEC MGP_C3HHeJ_T0098517.1 MGP_C3HHeJ_G0036718.1 mouse_genomes_project 5 154225031 154226752 + 4933425D22Rik sense_intronic sense_intronic MGP_C3HHeJ_T0071666.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70508701 70595684 - MGP_C3HHeJ_P0071666 Gabrg1 protein_coding protein_coding MGP_C3HHeJ_T0071667.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70509429 70595271 - MGP_C3HHeJ_P0071667 Gabrg1 protein_coding protein_coding MGP_C3HHeJ_T0071668.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70526680 70595381 - Gabrg1 protein_coding retained_intron MGP_C3HHeJ_T0071669.1 MGP_C3HHeJ_G0029305.1 mouse_genomes_project 5 70567446 70595381 - Gabrg1 protein_coding retained_intron MGP_C3HHeJ_T0001837.1 MGP_C3HHeJ_G0001760.1 mouse_genomes_project 5 137410333 137411299 - TEC TEC MGP_C3HHeJ_T0070644.1 MGP_C3HHeJ_G0029137.1 mouse_genomes_project 5 31131095 31194896 - MGP_C3HHeJ_P0070644 Prr14l protein_coding protein_coding MGP_C3HHeJ_T0070645.1 MGP_C3HHeJ_G0029137.1 mouse_genomes_project 5 31134912 31137378 - Prr14l protein_coding retained_intron MGP_C3HHeJ_T0070646.1 MGP_C3HHeJ_G0029137.1 mouse_genomes_project 5 31175209 31194876 - MGP_C3HHeJ_P0070646 Prr14l protein_coding protein_coding MGP_C3HHeJ_T0001607.1 MGP_C3HHeJ_G0001532.1 mouse_genomes_project 5 65437764 65439386 + TEC TEC MGP_C3HHeJ_T0074334.1 MGP_C3HHeJ_G0029835.1 mouse_genomes_project 5 133339817 133350757 + MGP_C3HHeJ_P0074334 Kctd7 protein_coding protein_coding MGP_C3HHeJ_T0074335.1 MGP_C3HHeJ_G0029835.1 mouse_genomes_project 5 133339880 133346683 + MGP_C3HHeJ_P0074335 Kctd7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074336.1 MGP_C3HHeJ_G0029835.1 mouse_genomes_project 5 133340060 133347445 + MGP_C3HHeJ_P0074336 Kctd7 protein_coding protein_coding MGP_C3HHeJ_T0071851.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75599004 75682064 + MGP_C3HHeJ_P0071851 Kit protein_coding protein_coding MGP_C3HHeJ_T0071852.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75599043 75682064 + MGP_C3HHeJ_P0071852 Kit protein_coding protein_coding MGP_C3HHeJ_T0071853.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75637014 75647390 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071854.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75663513 75665423 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071855.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75668175 75671322 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071856.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75671034 75678198 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071857.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75674423 75682036 + Kit protein_coding retained_intron MGP_C3HHeJ_T0071858.1 MGP_C3HHeJ_G0029338.1 mouse_genomes_project 5 75674522 75677623 + Kit protein_coding retained_intron MGP_C3HHeJ_T0004594.1 MGP_C3HHeJ_G0003974.1 mouse_genomes_project 5 33465154 33466730 - Gm43791 antisense antisense MGP_C3HHeJ_T0008111.1 MGP_C3HHeJ_G0006604.1 mouse_genomes_project 5 87286798 87304100 - Gm43057 lincRNA lincRNA MGP_C3HHeJ_T0008294.1 MGP_C3HHeJ_G0006726.1 mouse_genomes_project 5 129602902 129604028 - Gm42592 lincRNA lincRNA MGP_C3HHeJ_T0001747.1 MGP_C3HHeJ_G0001671.1 mouse_genomes_project 5 119233983 119234416 + TEC TEC MGP_C3HHeJ_T0014689.1 MGP_C3HHeJ_G0012793.1 mouse_genomes_project 5 13350472 13350881 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072677.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108508735 108565064 - MGP_C3HHeJ_P0072677 Hfm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072678.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108508737 108596451 - MGP_C3HHeJ_P0072678 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0072679.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108508740 108596009 - MGP_C3HHeJ_P0072679 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0072680.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108509202 108596014 - MGP_C3HHeJ_P0072680 Hfm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072681.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108510107 108559703 - MGP_C3HHeJ_P0072681 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0072682.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108572770 108596348 - Hfm1 protein_coding retained_intron MGP_C3HHeJ_T0072683.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108572770 108596009 - MGP_C3HHeJ_P0072683 Hfm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072684.1 MGP_C3HHeJ_G0029530.1 mouse_genomes_project 5 108572954 108595971 - MGP_C3HHeJ_P0072684 Hfm1 protein_coding protein_coding MGP_C3HHeJ_T0074832.1 MGP_C3HHeJ_G0029922.1 mouse_genomes_project 5 141131577 141132565 - MGP_C3HHeJ_P0074832 Pop7 protein_coding protein_coding MGP_C3HHeJ_T0074833.1 MGP_C3HHeJ_G0029922.1 mouse_genomes_project 5 141131578 141132658 - MGP_C3HHeJ_P0074833 Pop7 protein_coding protein_coding MGP_C3HHeJ_T0074955.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141768924 141795480 + MGP_C3HHeJ_P0074955 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0074956.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141768924 141795480 + MGP_C3HHeJ_P0074956 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0074957.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141768960 141792156 + MGP_C3HHeJ_P0074957 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0074958.1 MGP_C3HHeJ_G0029948.1 mouse_genomes_project 5 141778538 141792155 + MGP_C3HHeJ_P0074958 Zkscan1 protein_coding protein_coding MGP_C3HHeJ_T0014950.1 MGP_C3HHeJ_G0013054.1 mouse_genomes_project 5 117082618 117083238 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075736.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155538190 155683359 + MGP_C3HHeJ_P0075736 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075737.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155538190 155684184 + MGP_C3HHeJ_P0075737 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075738.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155538278 155684161 + MGP_C3HHeJ_P0075738 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075739.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155621675 155622467 + Pds5b protein_coding retained_intron MGP_C3HHeJ_T0075740.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155630213 155671400 + MGP_C3HHeJ_P0075740 Pds5b protein_coding protein_coding MGP_C3HHeJ_T0075741.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155633334 155643836 + Pds5b protein_coding processed_transcript MGP_C3HHeJ_T0075742.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155667547 155673689 + Pds5b protein_coding processed_transcript MGP_C3HHeJ_T0075743.1 MGP_C3HHeJ_G0030109.1 mouse_genomes_project 5 155677528 155683974 + Pds5b protein_coding retained_intron MGP_C3HHeJ_T0073584.1 MGP_C3HHeJ_G0029710.1 mouse_genomes_project 5 123447276 123460351 - MGP_C3HHeJ_P0073584 protein_coding protein_coding MGP_C3HHeJ_T0070284.1 MGP_C3HHeJ_G0029081.1 mouse_genomes_project 5 28264870 28278112 + MGP_C3HHeJ_P0070284 Gareml protein_coding protein_coding MGP_C3HHeJ_T0007961.1 MGP_C3HHeJ_G0006496.1 mouse_genomes_project 5 13344271 13364327 - 4930519H02Rik lincRNA lincRNA MGP_C3HHeJ_T0007962.1 MGP_C3HHeJ_G0006496.1 mouse_genomes_project 5 13347429 13364390 - 4930519H02Rik lincRNA lincRNA MGP_C3HHeJ_T0001805.1 MGP_C3HHeJ_G0001728.1 mouse_genomes_project 5 133129969 133133354 + TEC TEC MGP_C3HHeJ_T0001684.1 MGP_C3HHeJ_G0001608.1 mouse_genomes_project 5 94020209 94022117 - TEC TEC MGP_C3HHeJ_T0070603.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946468 29980559 + MGP_C3HHeJ_P0070603 Bre protein_coding protein_coding MGP_C3HHeJ_T0070604.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946688 29980979 + Bre protein_coding retained_intron MGP_C3HHeJ_T0070605.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946709 30331653 + MGP_C3HHeJ_P0070605 Bre protein_coding protein_coding MGP_C3HHeJ_T0070606.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946714 29956338 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0070607.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946724 30252072 + Bre protein_coding retained_intron MGP_C3HHeJ_T0070608.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946732 30085640 + Bre protein_coding retained_intron MGP_C3HHeJ_T0070609.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946748 30331546 + MGP_C3HHeJ_P0070609 Bre protein_coding protein_coding MGP_C3HHeJ_T0070610.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946768 30331438 + MGP_C3HHeJ_P0070610 Bre protein_coding protein_coding MGP_C3HHeJ_T0070611.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946768 30331438 + MGP_C3HHeJ_P0070611 Bre protein_coding protein_coding MGP_C3HHeJ_T0070612.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946768 30331438 + MGP_C3HHeJ_P0070612 Bre protein_coding protein_coding MGP_C3HHeJ_T0070613.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29946769 30075160 + MGP_C3HHeJ_P0070613 Bre protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070614.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 29950560 30304477 + MGP_C3HHeJ_P0070614 Bre protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070615.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 30038751 30075241 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0070616.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 30291526 30331452 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0070617.1 MGP_C3HHeJ_G0029130.1 mouse_genomes_project 5 30326420 30331445 + Bre protein_coding processed_transcript MGP_C3HHeJ_T0102031.1 MGP_C3HHeJ_G0039996.1 mouse_genomes_project 5 49157601 49327517 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0073067.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159121 115164386 - MGP_C3HHeJ_P0073067 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073068.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159121 115163943 - MGP_C3HHeJ_P0073068 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073069.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159121 115164860 - MGP_C3HHeJ_P0073069 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073070.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159125 115164386 - MGP_C3HHeJ_P0073070 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073071.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115159129 115164859 - MGP_C3HHeJ_P0073071 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073072.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115160303 115163667 - Crybb3 protein_coding retained_intron MGP_C3HHeJ_T0073073.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115160568 115163942 - Crybb3 protein_coding retained_intron MGP_C3HHeJ_T0073074.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115161666 115163929 - MGP_C3HHeJ_P0073074 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073075.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115161749 115164855 - MGP_C3HHeJ_P0073075 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0073076.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115161815 115164856 - Crybb3 protein_coding processed_transcript MGP_C3HHeJ_T0073077.1 MGP_C3HHeJ_G0029610.1 mouse_genomes_project 5 115163032 115164335 - MGP_C3HHeJ_P0073077 Crybb3 protein_coding protein_coding MGP_C3HHeJ_T0010653.1 MGP_C3HHeJ_G0008786.1 mouse_genomes_project 5 147348730 147348856 + Gm44405 miRNA miRNA MGP_C3HHeJ_T0070511.1 MGP_C3HHeJ_G0029117.1 mouse_genomes_project 5 29443388 29443946 - MGP_C3HHeJ_P0070511 Gm9970 protein_coding protein_coding MGP_C3HHeJ_T0014808.1 MGP_C3HHeJ_G0012912.1 mouse_genomes_project 5 57437361 57437583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008000.1 MGP_C3HHeJ_G0006521.1 mouse_genomes_project 5 29815292 29817095 - AI839979 lincRNA lincRNA MGP_C3HHeJ_T0008001.1 MGP_C3HHeJ_G0006521.1 mouse_genomes_project 5 29815802 29817089 - AI839979 lincRNA lincRNA MGP_C3HHeJ_T0073785.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125347075 125368213 + MGP_C3HHeJ_P0073785 Anapc7 protein_coding protein_coding MGP_C3HHeJ_T0073786.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125347075 125366735 + MGP_C3HHeJ_P0073786 Anapc7 protein_coding protein_coding MGP_C3HHeJ_T0073787.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125362674 125363786 + Anapc7 protein_coding retained_intron MGP_C3HHeJ_T0073788.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125363439 125365104 + Anapc7 protein_coding retained_intron MGP_C3HHeJ_T0073789.1 MGP_C3HHeJ_G0029745.1 mouse_genomes_project 5 125364675 125365083 + MGP_C3HHeJ_P0073789 Anapc7 protein_coding protein_coding MGP_C3HHeJ_T0073323.1 MGP_C3HHeJ_G0029658.1 mouse_genomes_project 5 117585692 117602796 + MGP_C3HHeJ_P0073323 Coq5 protein_coding protein_coding MGP_C3HHeJ_T0073324.1 MGP_C3HHeJ_G0029658.1 mouse_genomes_project 5 117585721 117586870 + Coq5 protein_coding retained_intron MGP_C3HHeJ_T0073325.1 MGP_C3HHeJ_G0029658.1 mouse_genomes_project 5 117590074 117602132 + MGP_C3HHeJ_P0073325 Coq5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008358.1 MGP_C3HHeJ_G0006773.1 mouse_genomes_project 5 151914997 151915541 + Gm27033 lincRNA lincRNA MGP_C3HHeJ_T0014870.1 MGP_C3HHeJ_G0012974.1 mouse_genomes_project 5 88167927 88169842 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008179.1 MGP_C3HHeJ_G0006657.1 mouse_genomes_project 5 110141602 110145323 + Gm43082 lincRNA lincRNA MGP_C3HHeJ_T0008064.1 MGP_C3HHeJ_G0006569.1 mouse_genomes_project 5 63932752 63977740 + Gm31363 lincRNA lincRNA MGP_C3HHeJ_T0001693.1 MGP_C3HHeJ_G0001617.1 mouse_genomes_project 5 99534823 99537940 + TEC TEC MGP_C3HHeJ_T0074044.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127150160 127185733 - MGP_C3HHeJ_P0074044 Pitpnm2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074045.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127150168 127284475 - MGP_C3HHeJ_P0074045 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0074046.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127151224 127219663 - MGP_C3HHeJ_P0074046 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0074047.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127151771 127156024 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074048.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127152552 127153578 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074049.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127156686 127158102 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074050.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127164267 127222227 - MGP_C3HHeJ_P0074050 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0074051.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127164440 127171724 - Pitpnm2 protein_coding retained_intron MGP_C3HHeJ_T0074052.1 MGP_C3HHeJ_G0029783.1 mouse_genomes_project 5 127175064 127217599 - MGP_C3HHeJ_P0074052 Pitpnm2 protein_coding protein_coding MGP_C3HHeJ_T0004801.1 MGP_C3HHeJ_G0004122.1 mouse_genomes_project 5 143144315 143145203 - 4930520M14Rik antisense antisense MGP_C3HHeJ_T0102057.1 MGP_C3HHeJ_G0040022.1 mouse_genomes_project 5 146705490 146706001 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0007970.1 MGP_C3HHeJ_G0006502.1 mouse_genomes_project 5 20519975 20527931 - A930003O13Rik lincRNA lincRNA MGP_C3HHeJ_T0007971.1 MGP_C3HHeJ_G0006502.1 mouse_genomes_project 5 20520413 20523510 - A930003O13Rik lincRNA lincRNA MGP_C3HHeJ_T0007972.1 MGP_C3HHeJ_G0006502.1 mouse_genomes_project 5 20525065 20527951 - A930003O13Rik lincRNA lincRNA MGP_C3HHeJ_T0004793.1 MGP_C3HHeJ_G0004119.1 mouse_genomes_project 5 141546944 141548984 + antisense antisense MGP_C3HHeJ_T0074575.1 MGP_C3HHeJ_G0029874.1 mouse_genomes_project 5 138807123 138822222 + MGP_C3HHeJ_P0074575 Trim50 protein_coding protein_coding MGP_C3HHeJ_T0074576.1 MGP_C3HHeJ_G0029874.1 mouse_genomes_project 5 138807124 138822573 + MGP_C3HHeJ_P0074576 Trim50 protein_coding protein_coding MGP_C3HHeJ_T0075165.1 MGP_C3HHeJ_G0029991.1 mouse_genomes_project 5 143887457 143958911 + MGP_C3HHeJ_P0075165 Elfn1 protein_coding protein_coding MGP_C3HHeJ_T0075166.1 MGP_C3HHeJ_G0029991.1 mouse_genomes_project 5 143887988 143955229 + Elfn1 protein_coding processed_transcript MGP_C3HHeJ_T0075412.1 MGP_C3HHeJ_G0030048.1 mouse_genomes_project 5 148966535 148991961 - MGP_C3HHeJ_P0075412 Tmem130 protein_coding protein_coding MGP_C3HHeJ_T0075413.1 MGP_C3HHeJ_G0030048.1 mouse_genomes_project 5 148982715 148992130 - Tmem130 protein_coding processed_transcript MGP_C3HHeJ_T0008379.1 MGP_C3HHeJ_G0006791.1 mouse_genomes_project 5 154014058 154028151 - Gm29264 lincRNA lincRNA MGP_C3HHeJ_T0004663.1 MGP_C3HHeJ_G0004030.1 mouse_genomes_project 5 97860324 97864160 - Gm42604 antisense antisense MGP_C3HHeJ_T0004766.1 MGP_C3HHeJ_G0004097.1 mouse_genomes_project 5 128074910 128075440 + Gm42838 antisense antisense MGP_C3HHeJ_T0008125.1 MGP_C3HHeJ_G0006618.1 mouse_genomes_project 5 98062950 98077945 + Gm8013 lincRNA lincRNA MGP_C3HHeJ_T0072738.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109433428 109518019 - MGP_C3HHeJ_P0072738 Evi5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072739.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109433432 109578190 - MGP_C3HHeJ_P0072739 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072740.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109435913 109501949 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072741.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109454645 109491715 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072742.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109478134 109572243 - MGP_C3HHeJ_P0072742 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072743.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109505742 109572243 - MGP_C3HHeJ_P0072743 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072744.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109507327 109508976 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072745.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109507777 109578127 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072746.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109507777 109578142 - MGP_C3HHeJ_P0072746 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072747.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109511811 109533101 - Evi5 protein_coding retained_intron MGP_C3HHeJ_T0072748.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109511847 109571463 - MGP_C3HHeJ_P0072748 Evi5 protein_coding protein_coding MGP_C3HHeJ_T0072749.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109515434 109571974 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072751.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109547610 109578139 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072752.1 MGP_C3HHeJ_G0029543.1 mouse_genomes_project 5 109575712 109578135 - Evi5 protein_coding processed_transcript MGP_C3HHeJ_T0072015.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601319 86635627 + MGP_C3HHeJ_P0072015 Stap1 protein_coding protein_coding MGP_C3HHeJ_T0072016.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601323 86626868 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0072017.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601347 86615279 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0072018.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601356 86615275 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0072019.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86601385 86633381 + MGP_C3HHeJ_P0072019 Stap1 protein_coding protein_coding MGP_C3HHeJ_T0072020.1 MGP_C3HHeJ_G0029364.1 mouse_genomes_project 5 86615736 86623930 + Stap1 protein_coding retained_intron MGP_C3HHeJ_T0011499.1 MGP_C3HHeJ_G0009632.1 mouse_genomes_project 5 65941777 65942100 - Gm23183 misc_RNA misc_RNA MGP_C3HHeJ_T0075340.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147727733 147754723 - MGP_C3HHeJ_P0075340 Rac1 protein_coding protein_coding MGP_C3HHeJ_T0075341.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147729581 147754680 - MGP_C3HHeJ_P0075341 Rac1 protein_coding protein_coding MGP_C3HHeJ_T0075342.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147733282 147744862 - Rac1 protein_coding processed_transcript MGP_C3HHeJ_T0075343.1 MGP_C3HHeJ_G0030030.1 mouse_genomes_project 5 147740906 147744288 - Rac1 protein_coding processed_transcript MGP_C3HHeJ_T0004570.1 MGP_C3HHeJ_G0003954.1 mouse_genomes_project 5 21003280 21026157 - Gm42948 antisense antisense MGP_C3HHeJ_T0017917.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204482 51209523 + 9230114K14Rik processed_transcript lincRNA MGP_C3HHeJ_T0017918.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204489 51295052 + 9230114K14Rik processed_transcript lincRNA MGP_C3HHeJ_T0017919.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204489 51213000 + 9230114K14Rik processed_transcript retained_intron MGP_C3HHeJ_T0017920.1 MGP_C3HHeJ_G0015358.1 mouse_genomes_project 5 51204523 51262028 + 9230114K14Rik processed_transcript lincRNA MGP_C3HHeJ_T0099483.1 MGP_C3HHeJ_G0037677.1 mouse_genomes_project 5 126362127 126362296 + Gm23458 snRNA snRNA MGP_C3HHeJ_T0001806.1 MGP_C3HHeJ_G0001729.1 mouse_genomes_project 5 133149825 133151686 + TEC TEC MGP_C3HHeJ_T0001543.1 MGP_C3HHeJ_G0001469.1 mouse_genomes_project 5 48128099 48128487 - TEC TEC MGP_C3HHeJ_T0071381.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53127049 53258072 + MGP_C3HHeJ_P0071381 Stim2 protein_coding protein_coding MGP_C3HHeJ_T0071382.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53127369 53255764 + MGP_C3HHeJ_P0071382 Stim2 protein_coding protein_coding MGP_C3HHeJ_T0071383.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53206750 53238375 + Stim2 protein_coding processed_transcript MGP_C3HHeJ_T0071384.1 MGP_C3HHeJ_G0029257.1 mouse_genomes_project 5 53252873 53255602 + Stim2 protein_coding retained_intron MGP_C3HHeJ_T0069956.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361400 19381357 + MGP_C3HHeJ_P0069956 Armc10 protein_coding protein_coding MGP_C3HHeJ_T0069957.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361466 19382809 + MGP_C3HHeJ_P0069957 Armc10 protein_coding protein_coding MGP_C3HHeJ_T0069958.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361604 19364372 + Armc10 protein_coding processed_transcript MGP_C3HHeJ_T0069959.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361640 19382723 + MGP_C3HHeJ_P0069959 Armc10 protein_coding protein_coding MGP_C3HHeJ_T0069960.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19361918 19381359 + MGP_C3HHeJ_P0069960 Armc10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069961.1 MGP_C3HHeJ_G0029016.1 mouse_genomes_project 5 19364221 19367837 + Armc10 protein_coding retained_intron MGP_C3HHeJ_T0014835.1 MGP_C3HHeJ_G0012939.1 mouse_genomes_project 5 70303875 70304489 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100712.1 MGP_C3HHeJ_G0038906.1 mouse_genomes_project 5 88295877 88296000 + Gm25066 snoRNA snoRNA MGP_C3HHeJ_T0075036.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351568 142370586 + MGP_C3HHeJ_P0075036 Zfp157 protein_coding protein_coding MGP_C3HHeJ_T0075037.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351579 142358119 + Zfp157 protein_coding retained_intron MGP_C3HHeJ_T0075038.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351607 142357195 + Zfp157 protein_coding retained_intron MGP_C3HHeJ_T0075039.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351611 142358163 + Zfp157 protein_coding retained_intron MGP_C3HHeJ_T0075040.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351619 142366257 + MGP_C3HHeJ_P0075040 Zfp157 protein_coding protein_coding MGP_C3HHeJ_T0075041.1 MGP_C3HHeJ_G0029964.1 mouse_genomes_project 5 142351640 142366269 + MGP_C3HHeJ_P0075041 Zfp157 protein_coding protein_coding MGP_C3HHeJ_T0015029.1 MGP_C3HHeJ_G0013133.1 mouse_genomes_project 5 152484694 152485188 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074007.1 MGP_C3HHeJ_G0029776.1 mouse_genomes_project 5 126946263 126957231 + MGP_C3HHeJ_P0074007 Gm43518 protein_coding protein_coding MGP_C3HHeJ_T0004749.1 MGP_C3HHeJ_G0004087.1 mouse_genomes_project 5 125948985 125957978 + A930024E05Rik antisense antisense MGP_C3HHeJ_T0014924.1 MGP_C3HHeJ_G0013028.1 mouse_genomes_project 5 109165371 109165894 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014931.1 MGP_C3HHeJ_G0013035.1 mouse_genomes_project 5 110794216 110794590 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101237.1 MGP_C3HHeJ_G0039365.1 mouse_genomes_project 5 120986056 121009433 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101238.1 MGP_C3HHeJ_G0039365.1 mouse_genomes_project 5 121008772 121009250 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0004574.1 MGP_C3HHeJ_G0003957.1 mouse_genomes_project 5 22662619 22670408 - Gm26648 antisense antisense MGP_C3HHeJ_T0008119.1 MGP_C3HHeJ_G0006612.1 mouse_genomes_project 5 92695141 92697141 - Gm43688 lincRNA lincRNA MGP_C3HHeJ_T0074111.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608580 127626759 + MGP_C3HHeJ_P0074111 Ddx55 protein_coding protein_coding MGP_C3HHeJ_T0074112.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608585 127625054 + MGP_C3HHeJ_P0074112 Ddx55 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074113.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608612 127618726 + Ddx55 protein_coding processed_transcript MGP_C3HHeJ_T0074114.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608630 127626759 + MGP_C3HHeJ_P0074114 Ddx55 protein_coding protein_coding MGP_C3HHeJ_T0074115.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127608674 127618782 + Ddx55 protein_coding processed_transcript MGP_C3HHeJ_T0074116.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127611377 127612807 + Ddx55 protein_coding retained_intron MGP_C3HHeJ_T0074117.1 MGP_C3HHeJ_G0029793.1 mouse_genomes_project 5 127619896 127624974 + Ddx55 protein_coding processed_transcript MGP_C3HHeJ_T0004636.1 MGP_C3HHeJ_G0004007.1 mouse_genomes_project 5 67301230 67306468 + Gm15478 antisense antisense MGP_C3HHeJ_T0001483.1 MGP_C3HHeJ_G0001410.1 mouse_genomes_project 5 37981758 37983326 - TEC TEC MGP_C3HHeJ_T0004675.1 MGP_C3HHeJ_G0004035.1 mouse_genomes_project 5 101222218 101224518 + antisense antisense MGP_C3HHeJ_T0075336.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147688470 147730042 + MGP_C3HHeJ_P0075336 Daglb protein_coding protein_coding MGP_C3HHeJ_T0075337.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147688499 147699223 + Daglb protein_coding retained_intron MGP_C3HHeJ_T0075338.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147696800 147701670 + Daglb protein_coding retained_intron MGP_C3HHeJ_T0075339.1 MGP_C3HHeJ_G0030029.1 mouse_genomes_project 5 147710497 147713814 + Daglb protein_coding retained_intron MGP_C3HHeJ_T0072659.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267342 108347425 - MGP_C3HHeJ_P0072659 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072660.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267344 108346570 - MGP_C3HHeJ_P0072660 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072661.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267345 108347425 - MGP_C3HHeJ_P0072661 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072662.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267347 108347192 - MGP_C3HHeJ_P0072662 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072663.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108267676 108274984 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072664.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108268567 108347400 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072665.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108287437 108347421 - MGP_C3HHeJ_P0072665 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072666.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288448 108347159 - MGP_C3HHeJ_P0072666 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072667.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288675 108318189 - MGP_C3HHeJ_P0072667 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072668.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288843 108347245 - MGP_C3HHeJ_P0072668 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072669.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108288890 108347159 - MGP_C3HHeJ_P0072669 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072670.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108289033 108347245 - MGP_C3HHeJ_P0072670 Zfp644 protein_coding protein_coding MGP_C3HHeJ_T0072671.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108338913 108345613 - Zfp644 protein_coding retained_intron MGP_C3HHeJ_T0072672.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108339962 108346761 - Zfp644 protein_coding retained_intron MGP_C3HHeJ_T0072673.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108340733 108347141 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072674.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108340746 108347139 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072675.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108345644 108347882 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0072676.1 MGP_C3HHeJ_G0029529.1 mouse_genomes_project 5 108345949 108346607 - Zfp644 protein_coding processed_transcript MGP_C3HHeJ_T0008267.1 MGP_C3HHeJ_G0006713.1 mouse_genomes_project 5 126011106 126223381 - lincRNA lincRNA MGP_C3HHeJ_T0001508.1 MGP_C3HHeJ_G0001435.1 mouse_genomes_project 5 43395056 43397793 - TEC TEC MGP_C3HHeJ_T0004722.1 MGP_C3HHeJ_G0004068.1 mouse_genomes_project 5 118625701 118637409 + Gm14507 antisense antisense MGP_C3HHeJ_T0008295.1 MGP_C3HHeJ_G0006727.1 mouse_genomes_project 5 129804757 129842583 + Gm43757 lincRNA lincRNA MGP_C3HHeJ_T0008296.1 MGP_C3HHeJ_G0006727.1 mouse_genomes_project 5 129804779 129809614 + Gm43757 lincRNA lincRNA MGP_C3HHeJ_T0014940.1 MGP_C3HHeJ_G0013044.1 mouse_genomes_project 5 112284203 112284522 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014710.1 MGP_C3HHeJ_G0012814.1 mouse_genomes_project 5 19629616 19629901 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074219.1 MGP_C3HHeJ_G0029813.1 mouse_genomes_project 5 131753637 131756794 + MGP_C3HHeJ_P0074219 Fzd10 protein_coding protein_coding MGP_C3HHeJ_T0071962.1 MGP_C3HHeJ_G0029359.1 mouse_genomes_project 5 77435962 77499340 - MGP_C3HHeJ_P0071962 Igfbp7 protein_coding protein_coding MGP_C3HHeJ_T0071963.1 MGP_C3HHeJ_G0029359.1 mouse_genomes_project 5 77435970 77499339 - MGP_C3HHeJ_P0071963 Igfbp7 protein_coding protein_coding MGP_C3HHeJ_T0071399.1 MGP_C3HHeJ_G0029261.1 mouse_genomes_project 5 62211302 62286539 + MGP_C3HHeJ_P0071399 Dthd1 protein_coding protein_coding MGP_C3HHeJ_T0075167.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 143996691 144320996 - MGP_C3HHeJ_P0075167 Mad1l1 protein_coding protein_coding MGP_C3HHeJ_T0075168.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 143996691 144320994 - MGP_C3HHeJ_P0075168 Mad1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075169.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 143996696 144170079 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075170.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 144077393 144104189 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075171.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 144134160 144169820 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075172.1 MGP_C3HHeJ_G0029992.1 mouse_genomes_project 5 144161299 144259346 - Mad1l1 protein_coding processed_transcript MGP_C3HHeJ_T0075312.1 MGP_C3HHeJ_G0030024.1 mouse_genomes_project 5 147503516 147508114 - MGP_C3HHeJ_P0075312 Zfp853 protein_coding protein_coding MGP_C3HHeJ_T0073435.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119516376 119541691 - MGP_C3HHeJ_P0073435 Suds3 protein_coding protein_coding MGP_C3HHeJ_T0073436.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119516381 119529105 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0073437.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119517133 119541806 - MGP_C3HHeJ_P0073437 Suds3 protein_coding protein_coding MGP_C3HHeJ_T0073438.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119519655 119523508 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0073439.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119529991 119539244 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0073440.1 MGP_C3HHeJ_G0029678.1 mouse_genomes_project 5 119529997 119534566 - Suds3 protein_coding retained_intron MGP_C3HHeJ_T0001618.1 MGP_C3HHeJ_G0001543.1 mouse_genomes_project 5 66050981 66053191 - TEC TEC MGP_C3HHeJ_T0008226.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607363 117625063 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008227.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607379 117608540 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008228.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607380 117623445 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008229.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607390 117608573 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0008230.1 MGP_C3HHeJ_G0006683.1 mouse_genomes_project 5 117607450 117607982 + Gm13830 lincRNA lincRNA MGP_C3HHeJ_T0001656.1 MGP_C3HHeJ_G0001580.1 mouse_genomes_project 5 74012750 74017968 - TEC TEC MGP_C3HHeJ_T0008256.1 MGP_C3HHeJ_G0006705.1 mouse_genomes_project 5 122207584 122222375 + Gm16064 lincRNA lincRNA MGP_C3HHeJ_T0071060.1 MGP_C3HHeJ_G0029203.1 mouse_genomes_project 5 36229406 36234832 + MGP_C3HHeJ_P0071060 Cytl1 protein_coding protein_coding MGP_C3HHeJ_T0071061.1 MGP_C3HHeJ_G0029203.1 mouse_genomes_project 5 36232330 36234827 + Cytl1 protein_coding retained_intron MGP_C3HHeJ_T0008086.1 MGP_C3HHeJ_G0006584.1 mouse_genomes_project 5 74746902 74751469 + Gm42575 lincRNA lincRNA MGP_C3HHeJ_T0008123.1 MGP_C3HHeJ_G0006616.1 mouse_genomes_project 5 98017778 98029618 + Gm42601 lincRNA lincRNA MGP_C3HHeJ_T0001532.1 MGP_C3HHeJ_G0001458.1 mouse_genomes_project 5 47883484 47884791 - TEC TEC MGP_C3HHeJ_T0072030.1 MGP_C3HHeJ_G0029369.1 mouse_genomes_project 5 86942395 86996538 - MGP_C3HHeJ_P0072030 Tmprss11a protein_coding protein_coding MGP_C3HHeJ_T0072031.1 MGP_C3HHeJ_G0029369.1 mouse_genomes_project 5 86949836 86952894 - Tmprss11a protein_coding retained_intron MGP_C3HHeJ_T0004615.1 MGP_C3HHeJ_G0003989.1 mouse_genomes_project 5 44096752 44112551 + Gm42413 antisense antisense MGP_C3HHeJ_T0070474.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381254 29389118 - MGP_C3HHeJ_P0070474 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070475.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381255 29388827 - MGP_C3HHeJ_P0070475 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070476.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381263 29388696 - MGP_C3HHeJ_P0070476 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070477.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381264 29388702 - MGP_C3HHeJ_P0070477 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070478.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29381265 29387328 - MGP_C3HHeJ_P0070478 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070479.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29385082 29386542 - Eif2b4 protein_coding retained_intron MGP_C3HHeJ_T0070480.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29385249 29385597 - MGP_C3HHeJ_P0070480 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070481.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29385269 29386832 - MGP_C3HHeJ_P0070481 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070482.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29386078 29386880 - MGP_C3HHeJ_P0070482 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0070483.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29386880 29388827 - Eif2b4 protein_coding processed_transcript MGP_C3HHeJ_T0070484.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29387010 29388687 - Eif2b4 protein_coding retained_intron MGP_C3HHeJ_T0070485.1 MGP_C3HHeJ_G0029113.1 mouse_genomes_project 5 29387398 29389106 - MGP_C3HHeJ_P0070485 Eif2b4 protein_coding protein_coding MGP_C3HHeJ_T0008284.1 MGP_C3HHeJ_G0006722.1 mouse_genomes_project 5 128411641 128422699 + Gm42485 lincRNA lincRNA MGP_C3HHeJ_T0008224.1 MGP_C3HHeJ_G0006681.1 mouse_genomes_project 5 116092417 116095611 - lincRNA lincRNA MGP_C3HHeJ_T0001828.1 MGP_C3HHeJ_G0001751.1 mouse_genomes_project 5 135462707 135464343 - TEC TEC MGP_C3HHeJ_T0099435.1 MGP_C3HHeJ_G0037629.1 mouse_genomes_project 5 37214035 37214142 - Gm22779 snRNA snRNA MGP_C3HHeJ_T0098296.1 MGP_C3HHeJ_G0036508.1 mouse_genomes_project 5 126530545 126530682 + Gm24682 scaRNA scaRNA MGP_C3HHeJ_T0007955.1 MGP_C3HHeJ_G0006491.1 mouse_genomes_project 5 4795358 5082054 - lincRNA lincRNA MGP_C3HHeJ_T0070084.1 MGP_C3HHeJ_G0029039.1 mouse_genomes_project 5 22364439 22369729 - MGP_C3HHeJ_P0070084 Cdk5 protein_coding protein_coding MGP_C3HHeJ_T0070085.1 MGP_C3HHeJ_G0029039.1 mouse_genomes_project 5 22365574 22369684 - MGP_C3HHeJ_P0070085 Cdk5 protein_coding protein_coding MGP_C3HHeJ_T0070086.1 MGP_C3HHeJ_G0029039.1 mouse_genomes_project 5 22367197 22368894 - Cdk5 protein_coding retained_intron MGP_C3HHeJ_T0008096.1 MGP_C3HHeJ_G0006593.1 mouse_genomes_project 5 76526817 76556240 + lincRNA lincRNA MGP_C3HHeJ_T0008097.1 MGP_C3HHeJ_G0006593.1 mouse_genomes_project 5 76527123 76556196 + lincRNA lincRNA MGP_C3HHeJ_T0072171.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936496 90949742 - MGP_C3HHeJ_P0072171 Cox18 protein_coding protein_coding MGP_C3HHeJ_T0072172.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936496 90949713 - MGP_C3HHeJ_P0072172 Cox18 protein_coding protein_coding MGP_C3HHeJ_T0072173.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936499 90937354 - Cox18 protein_coding processed_transcript MGP_C3HHeJ_T0072174.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936499 90943580 - Cox18 protein_coding retained_intron MGP_C3HHeJ_T0072175.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90936502 90937795 - Cox18 protein_coding retained_intron MGP_C3HHeJ_T0072176.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90943234 90945493 - Cox18 protein_coding retained_intron MGP_C3HHeJ_T0072177.1 MGP_C3HHeJ_G0029417.1 mouse_genomes_project 5 90944635 90949680 - MGP_C3HHeJ_P0072177 Cox18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014958.1 MGP_C3HHeJ_G0013062.1 mouse_genomes_project 5 119030075 119030732 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074931.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141454704 141488701 + MGP_C3HHeJ_P0074931 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074932.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141461639 141464811 + protein_coding retained_intron MGP_C3HHeJ_T0074933.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141468115 141469817 + protein_coding retained_intron MGP_C3HHeJ_T0074934.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141468344 141480366 + protein_coding processed_transcript MGP_C3HHeJ_T0074935.1 MGP_C3HHeJ_G0029939.1 mouse_genomes_project 5 141479582 141488403 + MGP_C3HHeJ_P0074935 protein_coding protein_coding MGP_C3HHeJ_T0099439.1 MGP_C3HHeJ_G0037633.1 mouse_genomes_project 5 59858645 59858753 - Gm23331 snRNA snRNA MGP_C3HHeJ_T0014840.1 MGP_C3HHeJ_G0012944.1 mouse_genomes_project 5 72924498 72924757 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014734.1 MGP_C3HHeJ_G0012838.1 mouse_genomes_project 5 23533634 23533908 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073612.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147718 124160000 - MGP_C3HHeJ_P0073612 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073613.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147722 124149129 - Trafd1 protein_coding retained_intron MGP_C3HHeJ_T0073614.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147722 124154686 - MGP_C3HHeJ_P0073614 Trafd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073615.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124147729 124149472 - MGP_C3HHeJ_P0073615 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073616.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124154493 124161273 - MGP_C3HHeJ_P0073616 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073617.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124154739 124161390 - MGP_C3HHeJ_P0073617 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073618.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124155459 124161442 - MGP_C3HHeJ_P0073618 Trafd1 protein_coding protein_coding MGP_C3HHeJ_T0073619.1 MGP_C3HHeJ_G0029719.1 mouse_genomes_project 5 124160023 124161224 - Trafd1 protein_coding processed_transcript MGP_C3HHeJ_T0014762.1 MGP_C3HHeJ_G0012866.1 mouse_genomes_project 5 32164980 32165292 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072496.1 MGP_C3HHeJ_G0029489.1 mouse_genomes_project 5 101968666 102009616 - MGP_C3HHeJ_P0072496 Hpse protein_coding protein_coding MGP_C3HHeJ_T0072497.1 MGP_C3HHeJ_G0029489.1 mouse_genomes_project 5 101973738 102009605 - MGP_C3HHeJ_P0072497 Hpse protein_coding protein_coding MGP_C3HHeJ_T0074301.1 MGP_C3HHeJ_G0029828.1 mouse_genomes_project 5 133072760 133076842 + protein_coding retained_intron MGP_C3HHeJ_T0070353.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977567 29031241 + MGP_C3HHeJ_P0070353 Mapre3 protein_coding protein_coding MGP_C3HHeJ_T0070354.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977659 29031194 + Mapre3 protein_coding retained_intron MGP_C3HHeJ_T0070355.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977680 29031194 + MGP_C3HHeJ_P0070355 Mapre3 protein_coding protein_coding MGP_C3HHeJ_T0070356.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 28977686 29027712 + Mapre3 protein_coding retained_intron MGP_C3HHeJ_T0070357.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 29018933 29028493 + MGP_C3HHeJ_P0070357 Mapre3 protein_coding protein_coding MGP_C3HHeJ_T0070358.1 MGP_C3HHeJ_G0029094.1 mouse_genomes_project 5 29029656 29030390 + Mapre3 protein_coding retained_intron MGP_C3HHeJ_T0072385.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920276 97947046 + MGP_C3HHeJ_P0072385 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072386.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920322 97976538 + MGP_C3HHeJ_P0072386 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072387.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920378 97955962 + MGP_C3HHeJ_P0072387 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072388.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97920437 97956903 + MGP_C3HHeJ_P0072388 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0072389.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97941779 97965800 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072390.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97946937 97968916 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072391.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97958924 97961439 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072392.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97961033 97976254 + Anxa3 protein_coding retained_intron MGP_C3HHeJ_T0072393.1 MGP_C3HHeJ_G0029465.1 mouse_genomes_project 5 97972567 97976432 + MGP_C3HHeJ_P0072393 Anxa3 protein_coding protein_coding MGP_C3HHeJ_T0099417.1 MGP_C3HHeJ_G0037611.1 mouse_genomes_project 5 6349408 6349575 + Gm24666 snRNA snRNA MGP_C3HHeJ_T0008299.1 MGP_C3HHeJ_G0006730.1 mouse_genomes_project 5 129962063 129995376 + Gm42954 lincRNA lincRNA MGP_C3HHeJ_T0100693.1 MGP_C3HHeJ_G0038887.1 mouse_genomes_project 5 38056703 38056832 - Gm25377 snoRNA snoRNA MGP_C3HHeJ_T0008065.1 MGP_C3HHeJ_G0006570.1 mouse_genomes_project 5 63958955 63972093 - 1700027F09Rik lincRNA lincRNA MGP_C3HHeJ_T0001626.1 MGP_C3HHeJ_G0001551.1 mouse_genomes_project 5 66610936 66613093 + TEC TEC MGP_C3HHeJ_T0014875.1 MGP_C3HHeJ_G0012979.1 mouse_genomes_project 5 88867053 88867432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074954.1 MGP_C3HHeJ_G0029947.1 mouse_genomes_project 5 141742589 141748447 + MGP_C3HHeJ_P0074954 protein_coding protein_coding MGP_C3HHeJ_T0014827.1 MGP_C3HHeJ_G0012931.1 mouse_genomes_project 5 65803757 65807195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074662.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139584296 139594060 + Upk3bl protein_coding processed_transcript MGP_C3HHeJ_T0074663.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139586995 139594060 + MGP_C3HHeJ_P0074663 Upk3bl protein_coding protein_coding MGP_C3HHeJ_T0074664.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139587071 139594055 + MGP_C3HHeJ_P0074664 Upk3bl protein_coding protein_coding MGP_C3HHeJ_T0074665.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139587071 139594062 + MGP_C3HHeJ_P0074665 Upk3bl protein_coding protein_coding MGP_C3HHeJ_T0074666.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139589850 139594046 + Upk3bl protein_coding processed_transcript MGP_C3HHeJ_T0074667.1 MGP_C3HHeJ_G0029892.1 mouse_genomes_project 5 139589923 139594048 + MGP_C3HHeJ_P0074667 Upk3bl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001762.1 MGP_C3HHeJ_G0001686.1 mouse_genomes_project 5 123376602 123377875 + TEC TEC MGP_C3HHeJ_T0069962.1 MGP_C3HHeJ_G0029017.1 mouse_genomes_project 5 19383015 19426014 - MGP_C3HHeJ_P0069962 Napepld protein_coding protein_coding MGP_C3HHeJ_T0069963.1 MGP_C3HHeJ_G0029017.1 mouse_genomes_project 5 19383017 19426016 - MGP_C3HHeJ_P0069963 Napepld protein_coding protein_coding MGP_C3HHeJ_T0008175.1 MGP_C3HHeJ_G0006653.1 mouse_genomes_project 5 108225430 108225943 + Gm29464 lincRNA lincRNA MGP_C3HHeJ_T0014772.1 MGP_C3HHeJ_G0012876.1 mouse_genomes_project 5 37081915 37082314 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008298.1 MGP_C3HHeJ_G0006729.1 mouse_genomes_project 5 129912682 129930851 - Gm42953 lincRNA lincRNA MGP_C3HHeJ_T0100692.1 MGP_C3HHeJ_G0038886.1 mouse_genomes_project 5 35129550 35129674 + snoRNA snoRNA MGP_C3HHeJ_T0001597.1 MGP_C3HHeJ_G0001522.1 mouse_genomes_project 5 64980678 64982154 - TEC TEC MGP_C3HHeJ_T0070176.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23208156 23212169 + Galnt11 protein_coding processed_transcript MGP_C3HHeJ_T0070178.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23209131 23243382 + MGP_C3HHeJ_P0070178 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0070179.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23224009 23243381 + MGP_C3HHeJ_P0070179 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0070180.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23224419 23226397 + MGP_C3HHeJ_P0070180 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0070181.1 MGP_C3HHeJ_G0029056.1 mouse_genomes_project 5 23224999 23243382 + MGP_C3HHeJ_P0070181 Galnt11 protein_coding protein_coding MGP_C3HHeJ_T0073386.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988953 118076606 - MGP_C3HHeJ_P0073386 Ccdc64 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073387.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988960 117990580 - Ccdc64 protein_coding retained_intron MGP_C3HHeJ_T0073388.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988960 118076737 - MGP_C3HHeJ_P0073388 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073389.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988962 117993772 - MGP_C3HHeJ_P0073389 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073390.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117988965 117993767 - MGP_C3HHeJ_P0073390 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073391.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117990052 117993772 - MGP_C3HHeJ_P0073391 Ccdc64 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073392.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 117992604 118011022 - MGP_C3HHeJ_P0073392 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073393.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118001000 118011288 - Ccdc64 protein_coding retained_intron MGP_C3HHeJ_T0073394.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118008004 118061675 - Ccdc64 protein_coding processed_transcript MGP_C3HHeJ_T0073395.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118010942 118076483 - MGP_C3HHeJ_P0073395 Ccdc64 protein_coding protein_coding MGP_C3HHeJ_T0073396.1 MGP_C3HHeJ_G0029671.1 mouse_genomes_project 5 118069579 118076544 - Ccdc64 protein_coding retained_intron MGP_C3HHeJ_T0008266.1 MGP_C3HHeJ_G0006712.1 mouse_genomes_project 5 123269104 123269814 + Gm15749 lincRNA lincRNA MGP_C3HHeJ_T0014799.1 MGP_C3HHeJ_G0012903.1 mouse_genomes_project 5 54759032 54759738 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070881.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33335248 33348798 + Msantd1 protein_coding processed_transcript MGP_C3HHeJ_T0070882.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33346069 33354547 + MGP_C3HHeJ_P0070882 Msantd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070883.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33346896 33354822 + MGP_C3HHeJ_P0070883 Msantd1 protein_coding protein_coding MGP_C3HHeJ_T0070884.1 MGP_C3HHeJ_G0029171.1 mouse_genomes_project 5 33348520 33354673 + MGP_C3HHeJ_P0070884 Msantd1 protein_coding protein_coding MGP_C3HHeJ_T0070126.1 MGP_C3HHeJ_G0029044.1 mouse_genomes_project 5 22455426 22483568 - MGP_C3HHeJ_P0070126 Gbx1 protein_coding protein_coding MGP_C3HHeJ_T0074824.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 140993731 141104937 - MGP_C3HHeJ_P0074824 Zan protein_coding protein_coding MGP_C3HHeJ_T0074825.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 140993731 141104468 - MGP_C3HHeJ_P0074825 Zan protein_coding protein_coding MGP_C3HHeJ_T0074826.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 141013637 141016832 - Zan protein_coding retained_intron MGP_C3HHeJ_T0074827.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 141026706 141028607 - MGP_C3HHeJ_P0074827 Zan protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074828.1 MGP_C3HHeJ_G0029920.1 mouse_genomes_project 5 141056121 141075274 - Zan protein_coding retained_intron MGP_C3HHeJ_T0014770.1 MGP_C3HHeJ_G0012874.1 mouse_genomes_project 5 35888511 35888991 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011730.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72005182 72032274 + MGP_C3HHeJ_P0011730 Atp10d polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011731.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72005182 72103921 + MGP_C3HHeJ_P0011731 Atp10d polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011732.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72005206 72031411 + Atp10d polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0011733.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72069600 72103921 + Atp10d polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011734.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72085034 72103908 + Atp10d polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011735.1 MGP_C3HHeJ_G0009844.1 mouse_genomes_project 5 72085034 72103907 + MGP_C3HHeJ_P0011735 Atp10d polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0070393.1 MGP_C3HHeJ_G0029100.1 mouse_genomes_project 5 29104638 29117925 - MGP_C3HHeJ_P0070393 Cgref1 protein_coding protein_coding MGP_C3HHeJ_T0070394.1 MGP_C3HHeJ_G0029100.1 mouse_genomes_project 5 29106713 29117740 - Cgref1 protein_coding retained_intron MGP_C3HHeJ_T0101425.1 MGP_C3HHeJ_G0039454.1 mouse_genomes_project 5 74340088 74342530 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0017949.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112104541 112114082 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017950.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112105153 112130212 - Gm15787 processed_transcript processed_transcript MGP_C3HHeJ_T0017951.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112114092 112130151 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017952.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112120364 112130212 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017953.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112121051 112130174 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017954.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112121113 112122753 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017955.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112122454 112130212 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0017956.1 MGP_C3HHeJ_G0015370.1 mouse_genomes_project 5 112122977 112130148 - Gm15787 processed_transcript antisense MGP_C3HHeJ_T0070918.1 MGP_C3HHeJ_G0029176.1 mouse_genomes_project 5 33730442 33733888 + MGP_C3HHeJ_P0070918 Adra2c protein_coding protein_coding MGP_C3HHeJ_T0073144.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116177742 116204782 + MGP_C3HHeJ_P0073144 Dao protein_coding protein_coding MGP_C3HHeJ_T0073145.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116177923 116204549 + MGP_C3HHeJ_P0073145 Dao protein_coding protein_coding MGP_C3HHeJ_T0073146.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116178848 116204549 + MGP_C3HHeJ_P0073146 Dao protein_coding protein_coding MGP_C3HHeJ_T0073147.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116185806 116194505 + MGP_C3HHeJ_P0073147 Dao protein_coding protein_coding MGP_C3HHeJ_T0073148.1 MGP_C3HHeJ_G0029624.1 mouse_genomes_project 5 116196099 116199149 + Dao protein_coding retained_intron MGP_C3HHeJ_T0008128.1 MGP_C3HHeJ_G0006621.1 mouse_genomes_project 5 98346073 98358454 + Gm2861 lincRNA lincRNA MGP_C3HHeJ_T0014704.1 MGP_C3HHeJ_G0012808.1 mouse_genomes_project 5 18922261 18922513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014906.1 MGP_C3HHeJ_G0013010.1 mouse_genomes_project 5 103495166 103497342 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004727.1 MGP_C3HHeJ_G0004072.1 mouse_genomes_project 5 119748720 119749468 - Gm10399 antisense antisense MGP_C3HHeJ_T0004728.1 MGP_C3HHeJ_G0004072.1 mouse_genomes_project 5 119748968 119749466 - Gm10399 antisense antisense MGP_C3HHeJ_T0069708.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2583356 2606936 - MGP_C3HHeJ_P0069708 Gtpbp10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069709.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2587081 2606984 - MGP_C3HHeJ_P0069709 Gtpbp10 protein_coding protein_coding MGP_C3HHeJ_T0069710.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2589580 2591870 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069711.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2589600 2591125 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069712.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2590017 2604713 - MGP_C3HHeJ_P0069712 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069713.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2591744 2606932 - MGP_C3HHeJ_P0069713 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069714.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2591788 2603225 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069715.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2591825 2594948 - Gtpbp10 protein_coding retained_intron MGP_C3HHeJ_T0069716.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2594029 2606953 - MGP_C3HHeJ_P0069716 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069717.1 MGP_C3HHeJ_G0028974.1 mouse_genomes_project 5 2606339 2606987 - MGP_C3HHeJ_P0069717 Gtpbp10 protein_coding protein_coding MGP_C3HHeJ_T0071528.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65529964 65563901 + MGP_C3HHeJ_P0071528 Chrna9 protein_coding protein_coding MGP_C3HHeJ_T0071529.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65529971 65565979 + MGP_C3HHeJ_P0071529 Chrna9 protein_coding protein_coding MGP_C3HHeJ_T0071530.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65529991 65530958 + Chrna9 protein_coding retained_intron MGP_C3HHeJ_T0071531.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65530016 65539246 + Chrna9 protein_coding processed_transcript MGP_C3HHeJ_T0071532.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65530018 65539262 + Chrna9 protein_coding processed_transcript MGP_C3HHeJ_T0071533.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65561995 65572087 + MGP_C3HHeJ_P0071533 Chrna9 protein_coding protein_coding MGP_C3HHeJ_T0071534.1 MGP_C3HHeJ_G0029285.1 mouse_genomes_project 5 65570656 65571901 + Chrna9 protein_coding processed_transcript MGP_C3HHeJ_T0014951.1 MGP_C3HHeJ_G0013055.1 mouse_genomes_project 5 117082618 117083261 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001755.1 MGP_C3HHeJ_G0001679.1 mouse_genomes_project 5 121158819 121164755 + TEC TEC MGP_C3HHeJ_T0001425.1 MGP_C3HHeJ_G0001355.1 mouse_genomes_project 5 12062346 12066904 + TEC TEC MGP_C3HHeJ_T0008054.1 MGP_C3HHeJ_G0006560.1 mouse_genomes_project 5 52437873 52449921 - Gm42745 lincRNA lincRNA MGP_C3HHeJ_T0099472.1 MGP_C3HHeJ_G0037666.1 mouse_genomes_project 5 108977713 108977815 + Gm22557 snRNA snRNA MGP_C3HHeJ_T0004744.1 MGP_C3HHeJ_G0004082.1 mouse_genomes_project 5 124565041 124575508 - Gm16552 antisense antisense MGP_C3HHeJ_T0008333.1 MGP_C3HHeJ_G0006751.1 mouse_genomes_project 5 140881412 140897076 - Gm42456 lincRNA lincRNA MGP_C3HHeJ_T0004658.1 MGP_C3HHeJ_G0004025.1 mouse_genomes_project 5 89199294 89199600 + antisense antisense MGP_C3HHeJ_T0098487.1 MGP_C3HHeJ_G0036692.1 mouse_genomes_project 5 2343717 2346318 - Gm43728 sense_intronic sense_intronic MGP_C3HHeJ_T0072345.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930596 94011955 + MGP_C3HHeJ_P0072345 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072346.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930597 93931237 + Sept11 protein_coding retained_intron MGP_C3HHeJ_T0072347.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930597 94006972 + MGP_C3HHeJ_P0072347 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072348.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930607 93998456 + MGP_C3HHeJ_P0072348 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072349.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930610 94013433 + MGP_C3HHeJ_P0072349 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072350.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930685 94013443 + MGP_C3HHeJ_P0072350 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072351.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930695 93985628 + MGP_C3HHeJ_P0072351 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072352.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93930730 94013073 + MGP_C3HHeJ_P0072352 Sept11 protein_coding protein_coding MGP_C3HHeJ_T0072353.1 MGP_C3HHeJ_G0029457.1 mouse_genomes_project 5 93985587 93994867 + Sept11 protein_coding retained_intron MGP_C3HHeJ_T0075563.1 MGP_C3HHeJ_G0030084.1 mouse_genomes_project 5 151950676 151958093 - MGP_C3HHeJ_P0075563 Urad protein_coding protein_coding MGP_C3HHeJ_T0073551.1 MGP_C3HHeJ_G0029702.1 mouse_genomes_project 5 123206485 123224372 + MGP_C3HHeJ_P0073551 Iqcd protein_coding protein_coding MGP_C3HHeJ_T0073552.1 MGP_C3HHeJ_G0029702.1 mouse_genomes_project 5 123206492 123224376 + MGP_C3HHeJ_P0073552 Iqcd protein_coding protein_coding MGP_C3HHeJ_T0008245.1 MGP_C3HHeJ_G0006695.1 mouse_genomes_project 5 119740607 119744702 - BC051077 lincRNA lincRNA MGP_C3HHeJ_T0001478.1 MGP_C3HHeJ_G0001405.1 mouse_genomes_project 5 35105587 35108144 + TEC TEC MGP_C3HHeJ_T0100709.1 MGP_C3HHeJ_G0038903.1 mouse_genomes_project 5 78950184 78950320 + Gm25756 snoRNA snoRNA MGP_C3HHeJ_T0017960.1 MGP_C3HHeJ_G0015373.1 mouse_genomes_project 5 126411716 126414428 + Gm43813 processed_transcript sense_intronic MGP_C3HHeJ_T0017961.1 MGP_C3HHeJ_G0015373.1 mouse_genomes_project 5 126411716 126418864 + Gm43813 processed_transcript TEC MGP_C3HHeJ_T0008394.1 MGP_C3HHeJ_G0006799.1 mouse_genomes_project 5 155459230 155461709 - Gm43598 lincRNA lincRNA MGP_C3HHeJ_T0101228.1 MGP_C3HHeJ_G0039359.1 mouse_genomes_project 5 74295927 74296384 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001575.1 MGP_C3HHeJ_G0001501.1 mouse_genomes_project 5 57198063 57199418 + TEC TEC MGP_C3HHeJ_T0014682.1 MGP_C3HHeJ_G0012786.1 mouse_genomes_project 5 7933124 7933593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017924.1 MGP_C3HHeJ_G0015360.1 mouse_genomes_project 5 56841428 56979939 - 4932441J04Rik processed_transcript antisense MGP_C3HHeJ_T0017925.1 MGP_C3HHeJ_G0015360.1 mouse_genomes_project 5 56978157 56982221 - 4932441J04Rik processed_transcript retained_intron MGP_C3HHeJ_T0070449.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29331335 29345793 - MGP_C3HHeJ_P0070449 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070450.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29331344 29345764 - MGP_C3HHeJ_P0070450 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070451.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29331777 29345740 - MGP_C3HHeJ_P0070451 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070452.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332139 29345770 - MGP_C3HHeJ_P0070452 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070453.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332197 29345694 - MGP_C3HHeJ_P0070453 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070454.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332222 29345734 - MGP_C3HHeJ_P0070454 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070455.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332290 29336518 - MGP_C3HHeJ_P0070455 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070456.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29332392 29336538 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0070457.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29334551 29345760 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0070458.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29334751 29345763 - MGP_C3HHeJ_P0070458 Mpv17 protein_coding protein_coding MGP_C3HHeJ_T0070460.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29335517 29345760 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0070461.1 MGP_C3HHeJ_G0029110.1 mouse_genomes_project 5 29335753 29345284 - Mpv17 protein_coding retained_intron MGP_C3HHeJ_T0001519.1 MGP_C3HHeJ_G0001446.1 mouse_genomes_project 5 47013490 47015103 + TEC TEC MGP_C3HHeJ_T0015023.1 MGP_C3HHeJ_G0013127.1 mouse_genomes_project 5 150775557 150776429 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071152.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41825794 41885188 + MGP_C3HHeJ_P0071152 Cpeb2 protein_coding protein_coding MGP_C3HHeJ_T0071153.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41826087 41885193 + MGP_C3HHeJ_P0071153 Cpeb2 protein_coding protein_coding MGP_C3HHeJ_T0071154.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41826551 41830520 + Cpeb2 protein_coding retained_intron MGP_C3HHeJ_T0071155.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41827638 41876674 + MGP_C3HHeJ_P0071155 Cpeb2 protein_coding protein_coding MGP_C3HHeJ_T0071156.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41827650 41828486 + Cpeb2 protein_coding processed_transcript MGP_C3HHeJ_T0071157.1 MGP_C3HHeJ_G0029221.1 mouse_genomes_project 5 41829915 41840110 + Cpeb2 protein_coding processed_transcript MGP_C3HHeJ_T0001545.1 MGP_C3HHeJ_G0001471.1 mouse_genomes_project 5 48336279 48342538 - TEC TEC MGP_C3HHeJ_T0071108.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855111 36989811 - MGP_C3HHeJ_P0071108 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071109.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855111 36985633 - MGP_C3HHeJ_P0071109 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071110.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855112 36998414 - MGP_C3HHeJ_P0071110 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071111.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36855144 37008574 - MGP_C3HHeJ_P0071111 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071112.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36856034 36985485 - MGP_C3HHeJ_P0071112 Slc2a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071113.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36856034 37009523 - MGP_C3HHeJ_P0071113 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071114.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36857478 36985458 - MGP_C3HHeJ_P0071114 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071115.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36888030 36985509 - MGP_C3HHeJ_P0071115 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071116.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36916865 36946218 - Slc2a9 protein_coding processed_transcript MGP_C3HHeJ_T0071117.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36946038 37008501 - MGP_C3HHeJ_P0071117 Slc2a9 protein_coding protein_coding MGP_C3HHeJ_T0071118.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36980475 37008583 - Slc2a9 protein_coding processed_transcript MGP_C3HHeJ_T0071119.1 MGP_C3HHeJ_G0029212.1 mouse_genomes_project 5 36989417 36998387 - Slc2a9 protein_coding retained_intron MGP_C3HHeJ_T0069923.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18671969 18743125 - MGP_C3HHeJ_P0069923 Ptpn12 protein_coding protein_coding MGP_C3HHeJ_T0069924.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18671970 18674586 - Ptpn12 protein_coding retained_intron MGP_C3HHeJ_T0069925.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18683547 18686495 - Ptpn12 protein_coding retained_intron MGP_C3HHeJ_T0069926.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18683721 18695718 - Ptpn12 protein_coding retained_intron MGP_C3HHeJ_T0069927.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18686371 18742967 - MGP_C3HHeJ_P0069927 Ptpn12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069928.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18690445 18743111 - MGP_C3HHeJ_P0069928 Ptpn12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069929.1 MGP_C3HHeJ_G0029009.1 mouse_genomes_project 5 18695555 18742939 - MGP_C3HHeJ_P0069929 Ptpn12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004688.1 MGP_C3HHeJ_G0004042.1 mouse_genomes_project 5 105495061 105501851 + Gm26703 antisense antisense MGP_C3HHeJ_T0004689.1 MGP_C3HHeJ_G0004042.1 mouse_genomes_project 5 105495134 105496770 + Gm26703 antisense antisense MGP_C3HHeJ_T0004690.1 MGP_C3HHeJ_G0004042.1 mouse_genomes_project 5 105499723 105505856 + Gm26703 antisense antisense MGP_C3HHeJ_T0001695.1 MGP_C3HHeJ_G0001619.1 mouse_genomes_project 5 102083536 102086376 + TEC TEC MGP_C3HHeJ_T0008053.1 MGP_C3HHeJ_G0006559.1 mouse_genomes_project 5 52355232 52356931 + lincRNA lincRNA MGP_C3HHeJ_T0008087.1 MGP_C3HHeJ_G0006585.1 mouse_genomes_project 5 74941487 74959516 + Gm6116 lincRNA lincRNA MGP_C3HHeJ_T0010582.1 MGP_C3HHeJ_G0008715.1 mouse_genomes_project 5 22550827 22550925 + Mir671 miRNA miRNA MGP_C3HHeJ_T0001862.1 MGP_C3HHeJ_G0001784.1 mouse_genomes_project 5 147752343 147753432 + TEC TEC MGP_C3HHeJ_T0014898.1 MGP_C3HHeJ_G0013002.1 mouse_genomes_project 5 100219691 100220111 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014854.1 MGP_C3HHeJ_G0012958.1 mouse_genomes_project 5 77404836 77405119 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001832.1 MGP_C3HHeJ_G0001755.1 mouse_genomes_project 5 135754965 135760435 - TEC TEC MGP_C3HHeJ_T0071709.1 MGP_C3HHeJ_G0029314.1 mouse_genomes_project 5 72391294 72418222 - MGP_C3HHeJ_P0071709 Gm5868 protein_coding protein_coding MGP_C3HHeJ_T0008377.1 MGP_C3HHeJ_G0006789.1 mouse_genomes_project 5 153958342 153959344 + Gm43332 lincRNA lincRNA MGP_C3HHeJ_T0004630.1 MGP_C3HHeJ_G0004002.1 mouse_genomes_project 5 66245258 66301881 - Uchl1os antisense antisense MGP_C3HHeJ_T0004631.1 MGP_C3HHeJ_G0004002.1 mouse_genomes_project 5 66280095 66301416 - Uchl1os antisense antisense MGP_C3HHeJ_T0100735.1 MGP_C3HHeJ_G0038929.1 mouse_genomes_project 5 153914464 153914562 + Gm23362 snoRNA snoRNA MGP_C3HHeJ_T0001784.1 MGP_C3HHeJ_G0001708.1 mouse_genomes_project 5 126685330 126686669 - TEC TEC MGP_C3HHeJ_T0008078.1 MGP_C3HHeJ_G0006579.1 mouse_genomes_project 5 73198137 73204332 + Gm34411 lincRNA lincRNA MGP_C3HHeJ_T0072493.1 MGP_C3HHeJ_G0029488.1 mouse_genomes_project 5 101943883 101963384 - MGP_C3HHeJ_P0072493 Coq2 protein_coding protein_coding MGP_C3HHeJ_T0072494.1 MGP_C3HHeJ_G0029488.1 mouse_genomes_project 5 101944418 101963299 - MGP_C3HHeJ_P0072494 Coq2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072495.1 MGP_C3HHeJ_G0029488.1 mouse_genomes_project 5 101947096 101963392 - MGP_C3HHeJ_P0072495 Coq2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015003.1 MGP_C3HHeJ_G0013107.1 mouse_genomes_project 5 146414286 146415250 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015039.1 MGP_C3HHeJ_G0013143.1 mouse_genomes_project 5 155898552 155900408 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072150.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369285 89403364 + Mob1b protein_coding retained_intron MGP_C3HHeJ_T0072151.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369285 89420948 + MGP_C3HHeJ_P0072151 Mob1b protein_coding protein_coding MGP_C3HHeJ_T0072152.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369301 89414712 + MGP_C3HHeJ_P0072152 Mob1b protein_coding protein_coding MGP_C3HHeJ_T0072153.1 MGP_C3HHeJ_G0029411.1 mouse_genomes_project 5 89369407 89404079 + Mob1b protein_coding retained_intron MGP_C3HHeJ_T0001696.1 MGP_C3HHeJ_G0001620.1 mouse_genomes_project 5 102099524 102100600 - TEC TEC MGP_C3HHeJ_T0099480.1 MGP_C3HHeJ_G0037674.1 mouse_genomes_project 5 120632881 120632988 - Gm26411 snRNA snRNA MGP_C3HHeJ_T0075486.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149466340 149485433 + MGP_C3HHeJ_P0075486 Zkscan5 protein_coding protein_coding MGP_C3HHeJ_T0075487.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149466446 149485433 + MGP_C3HHeJ_P0075487 Zkscan5 protein_coding protein_coding MGP_C3HHeJ_T0075488.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149466899 149482285 + MGP_C3HHeJ_P0075488 Zkscan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075489.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149470016 149482149 + MGP_C3HHeJ_P0075489 Zkscan5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075490.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149470046 149482203 + MGP_C3HHeJ_P0075490 Zkscan5 protein_coding protein_coding MGP_C3HHeJ_T0075491.1 MGP_C3HHeJ_G0030060.1 mouse_genomes_project 5 149471284 149482019 + Zkscan5 protein_coding processed_transcript MGP_C3HHeJ_T0014912.1 MGP_C3HHeJ_G0013016.1 mouse_genomes_project 5 106464291 106464798 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075279.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147143620 147156587 + MGP_C3HHeJ_P0075279 Fscn1 protein_coding protein_coding MGP_C3HHeJ_T0075280.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147143653 147156585 + MGP_C3HHeJ_P0075280 Fscn1 protein_coding protein_coding MGP_C3HHeJ_T0075281.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147144120 147155572 + MGP_C3HHeJ_P0075281 Fscn1 protein_coding protein_coding MGP_C3HHeJ_T0075282.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147146229 147154007 + Fscn1 protein_coding processed_transcript MGP_C3HHeJ_T0075283.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147146526 147155355 + Fscn1 protein_coding processed_transcript MGP_C3HHeJ_T0075284.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147147809 147154129 + Fscn1 protein_coding processed_transcript MGP_C3HHeJ_T0075285.1 MGP_C3HHeJ_G0030017.1 mouse_genomes_project 5 147153539 147155391 + Fscn1 protein_coding retained_intron MGP_C3HHeJ_T0008109.1 MGP_C3HHeJ_G0006602.1 mouse_genomes_project 5 86210585 86212563 + Gm43567 lincRNA lincRNA MGP_C3HHeJ_T0001454.1 MGP_C3HHeJ_G0001383.1 mouse_genomes_project 5 29287195 29289514 + TEC TEC MGP_C3HHeJ_T0001455.1 MGP_C3HHeJ_G0001383.1 mouse_genomes_project 5 29287197 29289514 + TEC TEC MGP_C3HHeJ_T0014687.1 MGP_C3HHeJ_G0012791.1 mouse_genomes_project 5 11306179 11306686 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001802.1 MGP_C3HHeJ_G0001725.1 mouse_genomes_project 5 131887382 131888051 - TEC TEC MGP_C3HHeJ_T0001574.1 MGP_C3HHeJ_G0001500.1 mouse_genomes_project 5 57170773 57173502 + TEC TEC MGP_C3HHeJ_T0071790.1 MGP_C3HHeJ_G0029327.1 mouse_genomes_project 5 73554708 73582781 - MGP_C3HHeJ_P0071790 Lrrc66 protein_coding protein_coding MGP_C3HHeJ_T0071791.1 MGP_C3HHeJ_G0029327.1 mouse_genomes_project 5 73579940 73580577 - MGP_C3HHeJ_P0071791 Lrrc66 protein_coding protein_coding MGP_C3HHeJ_T0075043.1 MGP_C3HHeJ_G0029966.1 mouse_genomes_project 5 142464649 142467313 - MGP_C3HHeJ_P0075043 1700123K08Rik protein_coding protein_coding MGP_C3HHeJ_T0004808.1 MGP_C3HHeJ_G0004128.1 mouse_genomes_project 5 147545730 147549188 + 0610040B10Rik antisense antisense MGP_C3HHeJ_T0004809.1 MGP_C3HHeJ_G0004128.1 mouse_genomes_project 5 147545791 147547434 + 0610040B10Rik antisense antisense MGP_C3HHeJ_T0004810.1 MGP_C3HHeJ_G0004128.1 mouse_genomes_project 5 147545810 147549185 + 0610040B10Rik antisense antisense MGP_C3HHeJ_T0074947.1 MGP_C3HHeJ_G0029943.1 mouse_genomes_project 5 141567931 141596641 - MGP_C3HHeJ_P0074947 Cyp3a13 protein_coding protein_coding MGP_C3HHeJ_T0014871.1 MGP_C3HHeJ_G0012975.1 mouse_genomes_project 5 88299454 88299559 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072232.1 MGP_C3HHeJ_G0029434.1 mouse_genomes_project 5 91810659 91828859 + MGP_C3HHeJ_P0072232 Ereg protein_coding protein_coding MGP_C3HHeJ_T0074513.1 MGP_C3HHeJ_G0029861.1 mouse_genomes_project 5 138365815 138367623 - MGP_C3HHeJ_P0074513 Cldn4 protein_coding protein_coding MGP_C3HHeJ_T0070158.1 MGP_C3HHeJ_G0029052.1 mouse_genomes_project 5 22722827 22723143 - Crygn protein_coding processed_transcript MGP_C3HHeJ_T0070159.1 MGP_C3HHeJ_G0029052.1 mouse_genomes_project 5 22722827 22729864 - MGP_C3HHeJ_P0070159 Crygn protein_coding protein_coding MGP_C3HHeJ_T0071440.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64588551 64628047 - Tmem156 protein_coding processed_transcript MGP_C3HHeJ_T0071441.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64598263 64628002 - MGP_C3HHeJ_P0071441 Tmem156 protein_coding protein_coding MGP_C3HHeJ_T0071442.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64600811 64616440 - MGP_C3HHeJ_P0071442 Tmem156 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071443.1 MGP_C3HHeJ_G0029271.1 mouse_genomes_project 5 64627132 64628043 - Tmem156 protein_coding retained_intron MGP_C3HHeJ_T0070120.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22401173 22454717 + MGP_C3HHeJ_P0070120 Agap3 protein_coding protein_coding MGP_C3HHeJ_T0070121.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22401203 22434857 + MGP_C3HHeJ_P0070121 Agap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070122.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22401330 22433993 + Agap3 protein_coding processed_transcript MGP_C3HHeJ_T0070123.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22424717 22434849 + MGP_C3HHeJ_P0070123 Agap3 protein_coding protein_coding MGP_C3HHeJ_T0070124.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22430256 22454707 + MGP_C3HHeJ_P0070124 Agap3 protein_coding protein_coding MGP_C3HHeJ_T0070125.1 MGP_C3HHeJ_G0029043.1 mouse_genomes_project 5 22430675 22434847 + Agap3 protein_coding processed_transcript MGP_C3HHeJ_T0072396.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98230137 98260149 - MGP_C3HHeJ_P0072396 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072397.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98234802 98260126 - MGP_C3HHeJ_P0072397 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072398.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98244508 98246348 - Paqr3 protein_coding retained_intron MGP_C3HHeJ_T0072399.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98246100 98259996 - MGP_C3HHeJ_P0072399 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072400.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98250708 98260149 - MGP_C3HHeJ_P0072400 Paqr3 protein_coding protein_coding MGP_C3HHeJ_T0072401.1 MGP_C3HHeJ_G0029467.1 mouse_genomes_project 5 98253146 98260137 - Paqr3 protein_coding retained_intron MGP_C3HHeJ_T0001714.1 MGP_C3HHeJ_G0001638.1 mouse_genomes_project 5 109376369 109377366 + TEC TEC MGP_C3HHeJ_T0001859.1 MGP_C3HHeJ_G0001781.1 mouse_genomes_project 5 147530594 147531620 + TEC TEC MGP_C3HHeJ_T0073587.1 MGP_C3HHeJ_G0029712.1 mouse_genomes_project 5 123530378 123542285 + MGP_C3HHeJ_P0073587 Oas1f protein_coding protein_coding MGP_C3HHeJ_T0073588.1 MGP_C3HHeJ_G0029712.1 mouse_genomes_project 5 123531381 123542285 + MGP_C3HHeJ_P0073588 Oas1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071064.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36545995 36643125 + MGP_C3HHeJ_P0071064 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071065.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36546013 36643131 + MGP_C3HHeJ_P0071065 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071066.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36546042 36643135 + MGP_C3HHeJ_P0071066 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071067.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36546044 36624206 + MGP_C3HHeJ_P0071067 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071068.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36583368 36638672 + MGP_C3HHeJ_P0071068 Stx18 protein_coding protein_coding MGP_C3HHeJ_T0071069.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36619072 36630028 + Stx18 protein_coding processed_transcript MGP_C3HHeJ_T0071070.1 MGP_C3HHeJ_G0029205.1 mouse_genomes_project 5 36629637 36638698 + Stx18 protein_coding retained_intron MGP_C3HHeJ_T0073796.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125487063 125553275 - MGP_C3HHeJ_P0073796 Ift81 protein_coding protein_coding MGP_C3HHeJ_T0073797.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125487067 125498276 - Ift81 protein_coding retained_intron MGP_C3HHeJ_T0073798.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125507237 125513049 - Ift81 protein_coding processed_transcript MGP_C3HHeJ_T0073799.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125530061 125542271 - MGP_C3HHeJ_P0073799 Ift81 protein_coding protein_coding MGP_C3HHeJ_T0073800.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125540959 125553263 - Ift81 protein_coding retained_intron MGP_C3HHeJ_T0073801.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125541089 125553202 - MGP_C3HHeJ_P0073801 Ift81 protein_coding protein_coding MGP_C3HHeJ_T0073802.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125541124 125553258 - MGP_C3HHeJ_P0073802 Ift81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073803.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125543678 125546123 - Ift81 protein_coding retained_intron MGP_C3HHeJ_T0073804.1 MGP_C3HHeJ_G0029747.1 mouse_genomes_project 5 125545786 125553273 - MGP_C3HHeJ_P0073804 Ift81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071362.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52547457 52745580 + MGP_C3HHeJ_P0071362 protein_coding protein_coding MGP_C3HHeJ_T0071363.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52646394 52647925 + protein_coding retained_intron MGP_C3HHeJ_T0071364.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52687292 52754426 + MGP_C3HHeJ_P0071364 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071365.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52715936 52740594 + protein_coding processed_transcript MGP_C3HHeJ_T0071366.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52721414 52736656 + protein_coding processed_transcript MGP_C3HHeJ_T0071367.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52721577 52736656 + protein_coding processed_transcript MGP_C3HHeJ_T0071368.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52733252 52736658 + protein_coding retained_intron MGP_C3HHeJ_T0071369.1 MGP_C3HHeJ_G0029254.1 mouse_genomes_project 5 52740352 52748647 + protein_coding retained_intron MGP_C3HHeJ_T0071165.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42338755 42377288 - MGP_C3HHeJ_P0071165 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071166.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42338756 42377254 - MGP_C3HHeJ_P0071166 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071167.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42338764 42421038 - MGP_C3HHeJ_P0071167 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071168.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42339439 42377193 - MGP_C3HHeJ_P0071168 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071169.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42344746 42377247 - MGP_C3HHeJ_P0071169 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071170.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42350164 42377266 - MGP_C3HHeJ_P0071170 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071171.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42352144 42377282 - MGP_C3HHeJ_P0071171 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0071172.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42352949 42354144 - Fbxl5 protein_coding retained_intron MGP_C3HHeJ_T0071173.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42355291 42377247 - Fbxl5 protein_coding retained_intron MGP_C3HHeJ_T0071174.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42356571 42377263 - Fbxl5 protein_coding retained_intron MGP_C3HHeJ_T0071175.1 MGP_C3HHeJ_G0029224.1 mouse_genomes_project 5 42362417 42377245 - MGP_C3HHeJ_P0071175 Fbxl5 protein_coding protein_coding MGP_C3HHeJ_T0072863.1 MGP_C3HHeJ_G0029570.1 mouse_genomes_project 5 110981628 111007395 - MGP_C3HHeJ_P0072863 Vmn2r13 protein_coding protein_coding MGP_C3HHeJ_T0014774.1 MGP_C3HHeJ_G0012878.1 mouse_genomes_project 5 37940058 37940957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014884.1 MGP_C3HHeJ_G0012988.1 mouse_genomes_project 5 92493937 92494315 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001771.1 MGP_C3HHeJ_G0001695.1 mouse_genomes_project 5 125067023 125069364 + TEC TEC MGP_C3HHeJ_T0004597.1 MGP_C3HHeJ_G0003977.1 mouse_genomes_project 5 35210955 35212775 + Gm43701 antisense antisense MGP_C3HHeJ_T0001841.1 MGP_C3HHeJ_G0001763.1 mouse_genomes_project 5 137846599 137850808 - TEC TEC MGP_C3HHeJ_T0101232.1 MGP_C3HHeJ_G0039362.1 mouse_genomes_project 5 86596311 86597311 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101233.1 MGP_C3HHeJ_G0039362.1 mouse_genomes_project 5 86596366 86597450 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0070099.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22386953 22393708 - MGP_C3HHeJ_P0070099 Fastk protein_coding protein_coding MGP_C3HHeJ_T0070100.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22386954 22393700 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070102.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389552 22390729 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070103.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389552 22393720 - MGP_C3HHeJ_P0070103 Fastk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070104.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389552 22393801 - MGP_C3HHeJ_P0070104 Fastk protein_coding protein_coding MGP_C3HHeJ_T0070105.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389553 22393701 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070106.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389553 22390038 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070107.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22389556 22393722 - MGP_C3HHeJ_P0070107 Fastk protein_coding protein_coding MGP_C3HHeJ_T0070108.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390041 22390615 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070109.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390133 22390812 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0070110.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390437 22392472 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070111.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22390584 22393752 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0070112.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22391814 22393722 - Fastk protein_coding retained_intron MGP_C3HHeJ_T0070113.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22391882 22393711 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0070114.1 MGP_C3HHeJ_G0029041.1 mouse_genomes_project 5 22392444 22393711 - Fastk protein_coding processed_transcript MGP_C3HHeJ_T0001616.1 MGP_C3HHeJ_G0001541.1 mouse_genomes_project 5 65935866 65937871 - TEC TEC MGP_C3HHeJ_T0001426.1 MGP_C3HHeJ_G0001356.1 mouse_genomes_project 5 12236402 12238673 + TEC TEC MGP_C3HHeJ_T0014727.1 MGP_C3HHeJ_G0012831.1 mouse_genomes_project 5 22153369 22153767 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001824.1 MGP_C3HHeJ_G0001747.1 mouse_genomes_project 5 135261567 135265404 - TEC TEC MGP_C3HHeJ_T0001846.1 MGP_C3HHeJ_G0001768.1 mouse_genomes_project 5 138931394 138933035 - TEC TEC MGP_C3HHeJ_T0014881.1 MGP_C3HHeJ_G0012985.1 mouse_genomes_project 5 90834410 90834857 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069739.1 MGP_C3HHeJ_G0028977.1 mouse_genomes_project 5 2809612 2813683 - MGP_C3HHeJ_P0069739 protein_coding protein_coding MGP_C3HHeJ_T0069740.1 MGP_C3HHeJ_G0028977.1 mouse_genomes_project 5 2809703 2822266 - MGP_C3HHeJ_P0069740 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074024.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127092862 127127786 - MGP_C3HHeJ_P0074024 Abcb9 protein_coding protein_coding MGP_C3HHeJ_T0074025.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127093755 127111149 - Abcb9 protein_coding retained_intron MGP_C3HHeJ_T0074026.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127103725 127122282 - MGP_C3HHeJ_P0074026 Abcb9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074027.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127103729 127122282 - MGP_C3HHeJ_P0074027 Abcb9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074028.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127108136 127111864 - Abcb9 protein_coding processed_transcript MGP_C3HHeJ_T0074029.1 MGP_C3HHeJ_G0029780.1 mouse_genomes_project 5 127119954 127127774 - Abcb9 protein_coding retained_intron MGP_C3HHeJ_T0008115.1 MGP_C3HHeJ_G0006608.1 mouse_genomes_project 5 91663981 91666152 + Gm42530 lincRNA lincRNA MGP_C3HHeJ_T0001450.1 MGP_C3HHeJ_G0001379.1 mouse_genomes_project 5 27378078 27382374 - TEC TEC MGP_C3HHeJ_T0001477.1 MGP_C3HHeJ_G0001404.1 mouse_genomes_project 5 34011668 34012314 - TEC TEC MGP_C3HHeJ_T0001710.1 MGP_C3HHeJ_G0001634.1 mouse_genomes_project 5 107477959 107480221 + TEC TEC MGP_C3HHeJ_T0008400.1 MGP_C3HHeJ_G0006803.1 mouse_genomes_project 5 156148784 156153126 + Gm42904 lincRNA lincRNA MGP_C3HHeJ_T0072021.1 MGP_C3HHeJ_G0029365.1 mouse_genomes_project 5 86641755 86703113 - MGP_C3HHeJ_P0072021 Uba6 protein_coding protein_coding MGP_C3HHeJ_T0072022.1 MGP_C3HHeJ_G0029365.1 mouse_genomes_project 5 86649918 86703114 - Uba6 protein_coding retained_intron MGP_C3HHeJ_T0072443.1 MGP_C3HHeJ_G0029480.1 mouse_genomes_project 5 101224720 101225323 + MGP_C3HHeJ_P0072443 4930524J08Rik protein_coding protein_coding MGP_C3HHeJ_T0008055.1 MGP_C3HHeJ_G0006561.1 mouse_genomes_project 5 53495423 53505250 + Gm10440 lincRNA lincRNA MGP_C3HHeJ_T0008114.1 MGP_C3HHeJ_G0006607.1 mouse_genomes_project 5 91571036 91574660 + Gm43086 lincRNA lincRNA MGP_C3HHeJ_T0014742.1 MGP_C3HHeJ_G0012846.1 mouse_genomes_project 5 25916582 25917564 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008268.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126100667 126106207 - lincRNA lincRNA MGP_C3HHeJ_T0008270.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126102388 126107446 - lincRNA lincRNA MGP_C3HHeJ_T0008271.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126102559 126115774 - lincRNA lincRNA MGP_C3HHeJ_T0008272.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126102939 126116364 - lincRNA lincRNA MGP_C3HHeJ_T0008274.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126104323 126115787 - lincRNA lincRNA MGP_C3HHeJ_T0008275.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126105568 126108388 - lincRNA lincRNA MGP_C3HHeJ_T0008276.1 MGP_C3HHeJ_G0006714.1 mouse_genomes_project 5 126106140 126115765 - lincRNA lincRNA MGP_C3HHeJ_T0075000.1 MGP_C3HHeJ_G0029955.1 mouse_genomes_project 5 141881932 141888309 + MGP_C3HHeJ_P0075000 Cnpy4 protein_coding protein_coding MGP_C3HHeJ_T0075001.1 MGP_C3HHeJ_G0029955.1 mouse_genomes_project 5 141884306 141886988 + MGP_C3HHeJ_P0075001 Cnpy4 protein_coding protein_coding MGP_C3HHeJ_T0075002.1 MGP_C3HHeJ_G0029955.1 mouse_genomes_project 5 141884501 141886541 + Cnpy4 protein_coding retained_intron MGP_C3HHeJ_T0001579.1 MGP_C3HHeJ_G0001505.1 mouse_genomes_project 5 57241528 57243632 + TEC TEC MGP_C3HHeJ_T0074030.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142499 127145264 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0074031.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142503 127144685 + MGP_C3HHeJ_P0074031 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074032.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142516 127145668 + MGP_C3HHeJ_P0074032 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074033.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142518 127144553 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0074034.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142518 127144641 + MGP_C3HHeJ_P0074034 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074035.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142535 127144945 + MGP_C3HHeJ_P0074035 Ogfod2 protein_coding protein_coding MGP_C3HHeJ_T0074036.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142609 127145146 + MGP_C3HHeJ_P0074036 Ogfod2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074037.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127142993 127144396 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0074038.1 MGP_C3HHeJ_G0029781.1 mouse_genomes_project 5 127143481 127145061 + Ogfod2 protein_coding retained_intron MGP_C3HHeJ_T0014836.1 MGP_C3HHeJ_G0012940.1 mouse_genomes_project 5 71836517 71837288 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001697.1 MGP_C3HHeJ_G0001621.1 mouse_genomes_project 5 102169852 102172202 + TEC TEC MGP_C3HHeJ_T0071778.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73348912 73398465 + MGP_C3HHeJ_P0071778 Cwh43 protein_coding protein_coding MGP_C3HHeJ_T0071779.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73349064 73398475 + MGP_C3HHeJ_P0071779 Cwh43 protein_coding protein_coding MGP_C3HHeJ_T0071780.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73349199 73398322 + MGP_C3HHeJ_P0071780 Cwh43 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071781.1 MGP_C3HHeJ_G0029325.1 mouse_genomes_project 5 73377643 73381803 + Cwh43 protein_coding retained_intron MGP_C3HHeJ_T0001451.1 MGP_C3HHeJ_G0001380.1 mouse_genomes_project 5 28095599 28099600 - TEC TEC MGP_C3HHeJ_T0004592.1 MGP_C3HHeJ_G0003972.1 mouse_genomes_project 5 33072954 33074714 + Gm15522 antisense antisense MGP_C3HHeJ_T0014964.1 MGP_C3HHeJ_G0013068.1 mouse_genomes_project 5 124326514 124326847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070053.1 MGP_C3HHeJ_G0029032.1 mouse_genomes_project 5 22039900 22102597 + MGP_C3HHeJ_P0070053 Klhl7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070054.1 MGP_C3HHeJ_G0029032.1 mouse_genomes_project 5 22039942 22076624 + Klhl7 protein_coding retained_intron MGP_C3HHeJ_T0070055.1 MGP_C3HHeJ_G0029032.1 mouse_genomes_project 5 22040049 22105186 + MGP_C3HHeJ_P0070055 Klhl7 protein_coding protein_coding MGP_C3HHeJ_T0098518.1 MGP_C3HHeJ_G0036719.1 mouse_genomes_project 5 154844654 154844919 + Gm42558 sense_intronic sense_intronic MGP_C3HHeJ_T0004774.1 MGP_C3HHeJ_G0004103.1 mouse_genomes_project 5 134893365 134904612 + 2810432F15Rik antisense antisense MGP_C3HHeJ_T0004559.1 MGP_C3HHeJ_G0003945.1 mouse_genomes_project 5 5919144 5949154 - Gm5106 antisense antisense MGP_C3HHeJ_T0071022.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35501589 35565652 + MGP_C3HHeJ_P0071022 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071023.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35502365 35559518 + Jakmip1 protein_coding processed_transcript MGP_C3HHeJ_T0071024.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35503120 35565748 + MGP_C3HHeJ_P0071024 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071025.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35503140 35565447 + MGP_C3HHeJ_P0071025 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071026.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35520270 35559538 + Jakmip1 protein_coding processed_transcript MGP_C3HHeJ_T0071027.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35520668 35561163 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071028.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35520709 35579962 + MGP_C3HHeJ_P0071028 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071029.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35524094 35601699 + MGP_C3HHeJ_P0071029 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071030.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35524153 35561453 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071031.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35559577 35623798 + MGP_C3HHeJ_P0071031 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071032.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35559577 35623798 + MGP_C3HHeJ_P0071032 Jakmip1 protein_coding protein_coding MGP_C3HHeJ_T0071033.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35565284 35566234 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071034.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35599369 35601418 + Jakmip1 protein_coding retained_intron MGP_C3HHeJ_T0071035.1 MGP_C3HHeJ_G0029198.1 mouse_genomes_project 5 35602625 35627088 + MGP_C3HHeJ_P0071035 Jakmip1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075027.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142104969 142117434 + MGP_C3HHeJ_P0075027 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075028.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105238 142143664 + Stag3 protein_coding retained_intron MGP_C3HHeJ_T0075029.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105255 142143661 + Stag3 protein_coding retained_intron MGP_C3HHeJ_T0075030.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105255 142143664 + MGP_C3HHeJ_P0075030 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075031.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105273 142143664 + MGP_C3HHeJ_P0075031 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075032.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142105285 142117089 + MGP_C3HHeJ_P0075032 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075033.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142128929 142131195 + Stag3 protein_coding processed_transcript MGP_C3HHeJ_T0075034.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142134179 142140569 + MGP_C3HHeJ_P0075034 Stag3 protein_coding protein_coding MGP_C3HHeJ_T0075035.1 MGP_C3HHeJ_G0029963.1 mouse_genomes_project 5 142140523 142143657 + MGP_C3HHeJ_P0075035 Stag3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075531.1 MGP_C3HHeJ_G0030074.1 mouse_genomes_project 5 151317249 151374651 - MGP_C3HHeJ_P0075531 Usp12 protein_coding protein_coding MGP_C3HHeJ_T0075532.1 MGP_C3HHeJ_G0030074.1 mouse_genomes_project 5 151317279 151335301 - Usp12 protein_coding processed_transcript MGP_C3HHeJ_T0075533.1 MGP_C3HHeJ_G0030074.1 mouse_genomes_project 5 151323714 151335309 - Usp12 protein_coding processed_transcript MGP_C3HHeJ_T0001757.1 MGP_C3HHeJ_G0001681.1 mouse_genomes_project 5 121222464 121225157 + TEC TEC MGP_C3HHeJ_T0070980.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974609 35059788 - MGP_C3HHeJ_P0070980 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070981.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974609 35067860 - MGP_C3HHeJ_P0070981 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070982.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974609 35067266 - MGP_C3HHeJ_P0070982 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070983.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974610 35015773 - MGP_C3HHeJ_P0070983 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070984.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974613 35016752 - MGP_C3HHeJ_P0070984 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070985.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34974613 35067255 - MGP_C3HHeJ_P0070985 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070986.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977030 34992840 - MGP_C3HHeJ_P0070986 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070987.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977148 35071716 - MGP_C3HHeJ_P0070987 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070988.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977150 35071708 - MGP_C3HHeJ_P0070988 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070989.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977155 34978390 - Tbc1d14 protein_coding processed_transcript MGP_C3HHeJ_T0070990.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977355 35056824 - MGP_C3HHeJ_P0070990 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070991.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34977423 35015698 - MGP_C3HHeJ_P0070991 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070992.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 34980137 35005646 - Tbc1d14 protein_coding retained_intron MGP_C3HHeJ_T0070993.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35004456 35015669 - MGP_C3HHeJ_P0070993 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070994.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35010100 35015657 - Tbc1d14 protein_coding processed_transcript MGP_C3HHeJ_T0070995.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35026530 35067853 - Tbc1d14 protein_coding retained_intron MGP_C3HHeJ_T0070996.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35028423 35049340 - Tbc1d14 protein_coding processed_transcript MGP_C3HHeJ_T0070997.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35028485 35058956 - MGP_C3HHeJ_P0070997 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0070998.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35056450 35071675 - Tbc1d14 protein_coding retained_intron MGP_C3HHeJ_T0070999.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35056823 35071675 - MGP_C3HHeJ_P0070999 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0071000.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35056872 35058727 - MGP_C3HHeJ_P0071000 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0071001.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35057067 35079680 - MGP_C3HHeJ_P0071001 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0071002.1 MGP_C3HHeJ_G0029190.1 mouse_genomes_project 5 35057477 35079705 - MGP_C3HHeJ_P0071002 Tbc1d14 protein_coding protein_coding MGP_C3HHeJ_T0014977.1 MGP_C3HHeJ_G0013081.1 mouse_genomes_project 5 137235022 137235866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010601.1 MGP_C3HHeJ_G0008734.1 mouse_genomes_project 5 66689868 66689982 - Gm23841 miRNA miRNA MGP_C3HHeJ_T0001834.1 MGP_C3HHeJ_G0001757.1 mouse_genomes_project 5 135802994 135803820 - TEC TEC MGP_C3HHeJ_T0014817.1 MGP_C3HHeJ_G0012921.1 mouse_genomes_project 5 60037389 60039182 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008326.1 MGP_C3HHeJ_G0006747.1 mouse_genomes_project 5 139119852 139142765 - Gm43091 lincRNA lincRNA MGP_C3HHeJ_T0071792.1 MGP_C3HHeJ_G0029328.1 mouse_genomes_project 5 73583001 73597989 - MGP_C3HHeJ_P0071792 Sgcb protein_coding protein_coding MGP_C3HHeJ_T0071793.1 MGP_C3HHeJ_G0029328.1 mouse_genomes_project 5 73594214 73594677 - Sgcb protein_coding retained_intron MGP_C3HHeJ_T0008309.1 MGP_C3HHeJ_G0006737.1 mouse_genomes_project 5 131590819 131591692 + Gm42500 lincRNA lincRNA MGP_C3HHeJ_T0001701.1 MGP_C3HHeJ_G0001625.1 mouse_genomes_project 5 103387432 103388469 - TEC TEC MGP_C3HHeJ_T0071645.1 MGP_C3HHeJ_G0029300.1 mouse_genomes_project 5 67691745 67833925 + MGP_C3HHeJ_P0071645 Grxcr1 protein_coding protein_coding MGP_C3HHeJ_T0073012.1 MGP_C3HHeJ_G0029598.1 mouse_genomes_project 5 114304699 114319768 + MGP_C3HHeJ_P0073012 Crybb1 protein_coding protein_coding MGP_C3HHeJ_T0073013.1 MGP_C3HHeJ_G0029598.1 mouse_genomes_project 5 114304729 114319640 + MGP_C3HHeJ_P0073013 Crybb1 protein_coding protein_coding MGP_C3HHeJ_T0073014.1 MGP_C3HHeJ_G0029598.1 mouse_genomes_project 5 114304758 114319685 + MGP_C3HHeJ_P0073014 Crybb1 protein_coding protein_coding MGP_C3HHeJ_T0008390.1 MGP_C3HHeJ_G0006796.1 mouse_genomes_project 5 154711975 154712966 - Gm43452 lincRNA lincRNA MGP_C3HHeJ_T0004575.1 MGP_C3HHeJ_G0003958.1 mouse_genomes_project 5 22841056 22843447 + Prkag2os2 antisense antisense MGP_C3HHeJ_T0004599.1 MGP_C3HHeJ_G0003979.1 mouse_genomes_project 5 35511439 35514924 - Gm26647 antisense antisense MGP_C3HHeJ_T0015017.1 MGP_C3HHeJ_G0013121.1 mouse_genomes_project 5 150313856 150314179 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075007.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084395 142088731 - MGP_C3HHeJ_P0075007 BC037034 protein_coding protein_coding MGP_C3HHeJ_T0075008.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084397 142088077 - MGP_C3HHeJ_P0075008 BC037034 protein_coding protein_coding MGP_C3HHeJ_T0075009.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084398 142088727 - MGP_C3HHeJ_P0075009 BC037034 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075010.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084399 142088770 - BC037034 protein_coding retained_intron MGP_C3HHeJ_T0075011.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142084841 142085682 - MGP_C3HHeJ_P0075011 BC037034 protein_coding protein_coding MGP_C3HHeJ_T0075012.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142086306 142086931 - BC037034 protein_coding retained_intron MGP_C3HHeJ_T0075013.1 MGP_C3HHeJ_G0029959.1 mouse_genomes_project 5 142086989 142087875 - BC037034 protein_coding retained_intron MGP_C3HHeJ_T0014794.1 MGP_C3HHeJ_G0012898.1 mouse_genomes_project 5 51960681 51961676 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075191.1 MGP_C3HHeJ_G0029998.1 mouse_genomes_project 5 144596566 144599626 - MGP_C3HHeJ_P0075191 Grifin protein_coding protein_coding MGP_C3HHeJ_T0073503.1 MGP_C3HHeJ_G0029691.1 mouse_genomes_project 5 120736013 120758576 + MGP_C3HHeJ_P0073503 2410131K14Rik protein_coding protein_coding MGP_C3HHeJ_T0014999.1 MGP_C3HHeJ_G0013103.1 mouse_genomes_project 5 143666181 143666557 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008032.1 MGP_C3HHeJ_G0006539.1 mouse_genomes_project 5 38521958 38532390 - Gm35191 lincRNA lincRNA MGP_C3HHeJ_T0001736.1 MGP_C3HHeJ_G0001660.1 mouse_genomes_project 5 116063929 116068426 - TEC TEC MGP_C3HHeJ_T0014945.1 MGP_C3HHeJ_G0013049.1 mouse_genomes_project 5 113005526 113005893 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099433.1 MGP_C3HHeJ_G0037627.1 mouse_genomes_project 5 35122207 35122311 - Gm24878 snRNA snRNA MGP_C3HHeJ_T0001829.1 MGP_C3HHeJ_G0001752.1 mouse_genomes_project 5 135625111 135627408 - TEC TEC MGP_C3HHeJ_T0008337.1 MGP_C3HHeJ_G0006755.1 mouse_genomes_project 5 141899460 141956465 - lincRNA lincRNA MGP_C3HHeJ_T0001677.1 MGP_C3HHeJ_G0001601.1 mouse_genomes_project 5 91551449 91554582 + TEC TEC MGP_C3HHeJ_T0099441.1 MGP_C3HHeJ_G0037635.1 mouse_genomes_project 5 65766714 65766821 - Gm22929 snRNA snRNA MGP_C3HHeJ_T0004784.1 MGP_C3HHeJ_G0004111.1 mouse_genomes_project 5 138437307 138438447 - Abhd11os antisense antisense MGP_C3HHeJ_T0004785.1 MGP_C3HHeJ_G0004111.1 mouse_genomes_project 5 138437315 138438348 - Abhd11os antisense antisense MGP_C3HHeJ_T0072068.1 MGP_C3HHeJ_G0029386.1 mouse_genomes_project 5 88110517 88124826 - MGP_C3HHeJ_P0072068 Sult1d1 protein_coding protein_coding MGP_C3HHeJ_T0072069.1 MGP_C3HHeJ_G0029386.1 mouse_genomes_project 5 88111812 88116064 - Sult1d1 protein_coding processed_transcript MGP_C3HHeJ_T0015014.1 MGP_C3HHeJ_G0013118.1 mouse_genomes_project 5 149695772 149696358 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070798.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32740924 32758031 + MGP_C3HHeJ_P0070798 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070799.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32740963 32755121 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070800.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741015 32758028 + MGP_C3HHeJ_P0070800 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070801.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741025 32754627 + Rnf4 protein_coding processed_transcript MGP_C3HHeJ_T0070802.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741052 32751728 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070803.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741054 32747261 + Rnf4 protein_coding processed_transcript MGP_C3HHeJ_T0070804.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741059 32752020 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070805.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741081 32754462 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0070806.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741320 32754624 + MGP_C3HHeJ_P0070806 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070807.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741567 32758016 + MGP_C3HHeJ_P0070807 Rnf4 protein_coding protein_coding MGP_C3HHeJ_T0070808.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32741954 32747297 + Rnf4 protein_coding processed_transcript MGP_C3HHeJ_T0070809.1 MGP_C3HHeJ_G0029162.1 mouse_genomes_project 5 32755707 32760221 + Rnf4 protein_coding retained_intron MGP_C3HHeJ_T0001732.1 MGP_C3HHeJ_G0001656.1 mouse_genomes_project 5 115256177 115257090 - TEC TEC MGP_C3HHeJ_T0011738.1 MGP_C3HHeJ_G0009846.1 mouse_genomes_project 5 106910198 106951012 - MGP_C3HHeJ_P0011738 Gbp11 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0097912.1 MGP_C3HHeJ_G0036124.1 mouse_genomes_project 5 139108567 139108949 - pseudogene pseudogene MGP_C3HHeJ_T0001709.1 MGP_C3HHeJ_G0001633.1 mouse_genomes_project 5 107071496 107073668 + TEC TEC MGP_C3HHeJ_T0069816.1 MGP_C3HHeJ_G0028990.1 mouse_genomes_project 5 6272768 6337510 + MGP_C3HHeJ_P0069816 Tmem243 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069817.1 MGP_C3HHeJ_G0028990.1 mouse_genomes_project 5 6272880 6296479 + MGP_C3HHeJ_P0069817 Tmem243 protein_coding protein_coding MGP_C3HHeJ_T0069835.1 MGP_C3HHeJ_G0028990.1 mouse_genomes_project 5 6335162 6340406 + Tmem243 protein_coding processed_transcript MGP_C3HHeJ_T0072638.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107293604 107414000 + MGP_C3HHeJ_P0072638 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072639.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107294423 107413995 + MGP_C3HHeJ_P0072639 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072640.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107294444 107324443 + Lrrc8d protein_coding retained_intron MGP_C3HHeJ_T0072641.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107294500 107324441 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0072642.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107321593 107410621 + MGP_C3HHeJ_P0072642 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072643.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107321990 107410632 + MGP_C3HHeJ_P0072643 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072644.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107322196 107412423 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0072645.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107322269 107410788 + MGP_C3HHeJ_P0072645 Lrrc8d protein_coding protein_coding MGP_C3HHeJ_T0072646.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107322436 107432030 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0072647.1 MGP_C3HHeJ_G0029525.1 mouse_genomes_project 5 107423245 107432029 + Lrrc8d protein_coding processed_transcript MGP_C3HHeJ_T0100722.1 MGP_C3HHeJ_G0038916.1 mouse_genomes_project 5 109617379 109617473 + Snord21 snoRNA snoRNA MGP_C3HHeJ_T0004747.1 MGP_C3HHeJ_G0004085.1 mouse_genomes_project 5 124932782 124940459 + Gm15637 antisense antisense MGP_C3HHeJ_T0100734.1 MGP_C3HHeJ_G0038928.1 mouse_genomes_project 5 151831626 151831756 - Gm24556 snoRNA snoRNA MGP_C3HHeJ_T0102056.1 MGP_C3HHeJ_G0040021.1 mouse_genomes_project 5 144467877 144499516 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001682.1 MGP_C3HHeJ_G0001606.1 mouse_genomes_project 5 93929918 93930511 - TEC TEC MGP_C3HHeJ_T0014672.1 MGP_C3HHeJ_G0012776.1 mouse_genomes_project 5 4509481 4510482 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073219.1 MGP_C3HHeJ_G0029638.1 mouse_genomes_project 5 116898414 116918775 - MGP_C3HHeJ_P0073219 Gltp protein_coding protein_coding MGP_C3HHeJ_T0073220.1 MGP_C3HHeJ_G0029638.1 mouse_genomes_project 5 116899099 116918732 - MGP_C3HHeJ_P0073220 Gltp protein_coding protein_coding MGP_C3HHeJ_T0073221.1 MGP_C3HHeJ_G0029638.1 mouse_genomes_project 5 116899244 116918699 - MGP_C3HHeJ_P0073221 Gltp protein_coding protein_coding MGP_C3HHeJ_T0011506.1 MGP_C3HHeJ_G0009639.1 mouse_genomes_project 5 101702239 101702418 + Gm27286 misc_RNA misc_RNA MGP_C3HHeJ_T0070164.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22830518 23080960 - MGP_C3HHeJ_P0070164 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070165.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22830522 22970914 - MGP_C3HHeJ_P0070165 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070166.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22830522 22876445 - MGP_C3HHeJ_P0070166 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070167.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22831547 22839265 - Prkag2 protein_coding retained_intron MGP_C3HHeJ_T0070168.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22836655 22876485 - MGP_C3HHeJ_P0070168 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070169.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22839048 22869593 - MGP_C3HHeJ_P0070169 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070170.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22842386 22856386 - Prkag2 protein_coding retained_intron MGP_C3HHeJ_T0070171.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22842912 22876428 - Prkag2 protein_coding retained_intron MGP_C3HHeJ_T0070172.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22856394 22876951 - MGP_C3HHeJ_P0070172 Prkag2 protein_coding protein_coding MGP_C3HHeJ_T0070173.1 MGP_C3HHeJ_G0029054.1 mouse_genomes_project 5 22874206 22876426 - Prkag2 protein_coding processed_transcript MGP_C3HHeJ_T0014763.1 MGP_C3HHeJ_G0012867.1 mouse_genomes_project 5 32451563 32452020 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073654.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124365907 124394878 - MGP_C3HHeJ_P0073654 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073655.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124367758 124371064 - Aldh2 protein_coding retained_intron MGP_C3HHeJ_T0073656.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124367759 124379543 - MGP_C3HHeJ_P0073656 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073657.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124367837 124372715 - MGP_C3HHeJ_P0073657 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073658.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124370197 124394634 - MGP_C3HHeJ_P0073658 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073659.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124371348 124375004 - Aldh2 protein_coding retained_intron MGP_C3HHeJ_T0073660.1 MGP_C3HHeJ_G0029726.1 mouse_genomes_project 5 124376333 124394636 - MGP_C3HHeJ_P0073660 Aldh2 protein_coding protein_coding MGP_C3HHeJ_T0073247.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117012301 117044427 + MGP_C3HHeJ_P0073247 Ankrd13a protein_coding protein_coding MGP_C3HHeJ_T0073248.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117012569 117044795 + Ankrd13a protein_coding processed_transcript MGP_C3HHeJ_T0073249.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117023590 117042227 + MGP_C3HHeJ_P0073249 Ankrd13a protein_coding protein_coding MGP_C3HHeJ_T0073250.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117033290 117044795 + Ankrd13a protein_coding processed_transcript MGP_C3HHeJ_T0073251.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117038071 117044795 + Ankrd13a protein_coding processed_transcript MGP_C3HHeJ_T0073252.1 MGP_C3HHeJ_G0029641.1 mouse_genomes_project 5 117038185 117040178 + Ankrd13a protein_coding retained_intron MGP_C3HHeJ_T0074650.1 MGP_C3HHeJ_G0029889.1 mouse_genomes_project 5 139500027 139508415 + MGP_C3HHeJ_P0074650 Zp3 protein_coding protein_coding MGP_C3HHeJ_T0074651.1 MGP_C3HHeJ_G0029889.1 mouse_genomes_project 5 139500096 139507083 + MGP_C3HHeJ_P0074651 Zp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074394.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137515124 137555675 + MGP_C3HHeJ_P0074394 Gtf2ird2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074395.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137515309 137549503 + MGP_C3HHeJ_P0074395 Gtf2ird2 protein_coding protein_coding MGP_C3HHeJ_T0074396.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137529367 137529995 + Gtf2ird2 protein_coding processed_transcript MGP_C3HHeJ_T0074397.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137538007 137547565 + Gtf2ird2 protein_coding retained_intron MGP_C3HHeJ_T0074398.1 MGP_C3HHeJ_G0029847.1 mouse_genomes_project 5 137545459 137547963 + MGP_C3HHeJ_P0074398 Gtf2ird2 protein_coding protein_coding MGP_C3HHeJ_T0008376.1 MGP_C3HHeJ_G0006788.1 mouse_genomes_project 5 153913003 153922281 + Gm42788 lincRNA lincRNA MGP_C3HHeJ_T0075685.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840851 154891361 + Rxfp2 protein_coding retained_intron MGP_C3HHeJ_T0075686.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840851 154905200 + MGP_C3HHeJ_P0075686 Rxfp2 protein_coding protein_coding MGP_C3HHeJ_T0075687.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840851 154905200 + MGP_C3HHeJ_P0075687 Rxfp2 protein_coding protein_coding MGP_C3HHeJ_T0075688.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154840882 154905192 + MGP_C3HHeJ_P0075688 Rxfp2 protein_coding protein_coding MGP_C3HHeJ_T0075689.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154889183 154892683 + Rxfp2 protein_coding retained_intron MGP_C3HHeJ_T0075690.1 MGP_C3HHeJ_G0030103.1 mouse_genomes_project 5 154904514 154906043 + Rxfp2 protein_coding processed_transcript MGP_C3HHeJ_T0008312.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731221 131752726 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008313.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731221 131737475 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008314.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731243 131752726 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008315.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131731293 131737475 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008316.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131735201 131752732 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0008317.1 MGP_C3HHeJ_G0006739.1 mouse_genomes_project 5 131736312 131752693 - 5930412G12Rik lincRNA lincRNA MGP_C3HHeJ_T0001415.1 MGP_C3HHeJ_G0001345.1 mouse_genomes_project 5 10891711 10895618 + TEC TEC MGP_C3HHeJ_T0014761.1 MGP_C3HHeJ_G0012865.1 mouse_genomes_project 5 32065467 32065717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098514.1 MGP_C3HHeJ_G0036717.1 mouse_genomes_project 5 148578134 148581258 + Dmrt1i sense_intronic sense_intronic MGP_C3HHeJ_T0098515.1 MGP_C3HHeJ_G0036717.1 mouse_genomes_project 5 148578736 148581215 + Dmrt1i sense_intronic sense_intronic MGP_C3HHeJ_T0098516.1 MGP_C3HHeJ_G0036717.1 mouse_genomes_project 5 148578736 148581215 + Dmrt1i sense_intronic sense_intronic MGP_C3HHeJ_T0014953.1 MGP_C3HHeJ_G0013057.1 mouse_genomes_project 5 117340265 117340637 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014744.1 MGP_C3HHeJ_G0012848.1 mouse_genomes_project 5 27646582 27646939 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072583.1 MGP_C3HHeJ_G0029505.1 mouse_genomes_project 5 105364992 105401777 - MGP_C3HHeJ_P0072583 Hsd17b11 protein_coding protein_coding MGP_C3HHeJ_T0072584.1 MGP_C3HHeJ_G0029505.1 mouse_genomes_project 5 105379915 105401696 - MGP_C3HHeJ_P0072584 Hsd17b11 protein_coding protein_coding MGP_C3HHeJ_T0001600.1 MGP_C3HHeJ_G0001525.1 mouse_genomes_project 5 65088137 65092115 - TEC TEC MGP_C3HHeJ_T0010580.1 MGP_C3HHeJ_G0008713.1 mouse_genomes_project 5 11330614 11330719 - Gm24054 miRNA miRNA MGP_C3HHeJ_T0010599.1 MGP_C3HHeJ_G0008732.1 mouse_genomes_project 5 64497398 64497476 + Mir574 miRNA miRNA MGP_C3HHeJ_T0014807.1 MGP_C3HHeJ_G0012911.1 mouse_genomes_project 5 56732765 56733396 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074182.1 MGP_C3HHeJ_G0029804.1 mouse_genomes_project 5 128443019 128444254 + MGP_C3HHeJ_P0074182 Gm10382 protein_coding protein_coding MGP_C3HHeJ_T0099438.1 MGP_C3HHeJ_G0037632.1 mouse_genomes_project 5 51359956 51360061 - Gm25601 snRNA snRNA MGP_C3HHeJ_T0074373.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134713130 134810009 - MGP_C3HHeJ_P0074373 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074374.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134713139 135811875 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074375.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134713611 135811188 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074376.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134714886 135315277 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074377.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134715118 134756690 - MGP_C3HHeJ_P0074377 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074378.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134715222 135810392 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074379.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134716135 134735817 - MGP_C3HHeJ_P0074379 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074380.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134721230 134731570 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074381.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134745306 134747055 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074382.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134754992 134812331 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074383.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134756407 134808758 - Auts2 protein_coding processed_transcript MGP_C3HHeJ_T0074384.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 134808671 134812366 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074385.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 135314669 135811328 - Auts2 protein_coding retained_intron MGP_C3HHeJ_T0074386.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 135315247 135712350 - MGP_C3HHeJ_P0074386 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0074387.1 MGP_C3HHeJ_G0029844.1 mouse_genomes_project 5 135810035 135810344 - MGP_C3HHeJ_P0074387 Auts2 protein_coding protein_coding MGP_C3HHeJ_T0070544.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29505036 29508731 - MGP_C3HHeJ_P0070544 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0070545.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29505680 29508666 - MGP_C3HHeJ_P0070545 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0070546.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29505680 29506508 - MGP_C3HHeJ_P0070546 Fndc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070547.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29506066 29506761 - Fndc4 protein_coding retained_intron MGP_C3HHeJ_T0070548.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29506480 29508228 - MGP_C3HHeJ_P0070548 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0070549.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29506880 29508054 - Fndc4 protein_coding retained_intron MGP_C3HHeJ_T0070550.1 MGP_C3HHeJ_G0029121.1 mouse_genomes_project 5 29507509 29508875 - MGP_C3HHeJ_P0070550 Fndc4 protein_coding protein_coding MGP_C3HHeJ_T0010655.1 MGP_C3HHeJ_G0008788.1 mouse_genomes_project 5 151917392 151917502 - Mir7k miRNA miRNA MGP_C3HHeJ_T0073486.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120502507 120540323 + MGP_C3HHeJ_P0073486 Tesc protein_coding protein_coding MGP_C3HHeJ_T0073487.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120502529 120540290 + MGP_C3HHeJ_P0073487 Tesc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073488.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120502634 120540315 + Tesc protein_coding retained_intron MGP_C3HHeJ_T0073489.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120510704 120540218 + Tesc protein_coding processed_transcript MGP_C3HHeJ_T0073490.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120516232 120532124 + Tesc protein_coding processed_transcript MGP_C3HHeJ_T0073491.1 MGP_C3HHeJ_G0029687.1 mouse_genomes_project 5 120516233 120524885 + Tesc protein_coding processed_transcript MGP_C3HHeJ_T0008124.1 MGP_C3HHeJ_G0006617.1 mouse_genomes_project 5 98050473 98063855 - Gm33370 lincRNA lincRNA MGP_C3HHeJ_T0008346.1 MGP_C3HHeJ_G0006763.1 mouse_genomes_project 5 147485540 147487967 + BC030343 lincRNA lincRNA MGP_C3HHeJ_T0073280.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117226740 117249767 - MGP_C3HHeJ_P0073280 Hnf1a protein_coding protein_coding MGP_C3HHeJ_T0073281.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117227821 117249544 - MGP_C3HHeJ_P0073281 Hnf1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073282.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117230341 117249544 - MGP_C3HHeJ_P0073282 Hnf1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073283.1 MGP_C3HHeJ_G0029649.1 mouse_genomes_project 5 117247403 117249794 - Hnf1a protein_coding retained_intron MGP_C3HHeJ_T0072127.1 MGP_C3HHeJ_G0029401.1 mouse_genomes_project 5 88870126 88870207 - MGP_C3HHeJ_P0072127 Gm11115 protein_coding protein_coding MGP_C3HHeJ_T0014784.1 MGP_C3HHeJ_G0012888.1 mouse_genomes_project 5 44320455 44321080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007987.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24502966 24538255 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0007988.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24502968 24538280 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0007989.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24502970 24538244 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0007990.1 MGP_C3HHeJ_G0006513.1 mouse_genomes_project 5 24519884 24538255 - 4930584F24Rik lincRNA lincRNA MGP_C3HHeJ_T0072918.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112241426 112293604 + MGP_C3HHeJ_P0072918 Pole protein_coding protein_coding MGP_C3HHeJ_T0072919.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112241461 112246483 + MGP_C3HHeJ_P0072919 Pole protein_coding protein_coding MGP_C3HHeJ_T0072920.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112241497 112263431 + Pole protein_coding retained_intron MGP_C3HHeJ_T0072921.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112272487 112274617 + Pole protein_coding retained_intron MGP_C3HHeJ_T0072922.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112283612 112293581 + Pole protein_coding retained_intron MGP_C3HHeJ_T0072923.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112286895 112293583 + MGP_C3HHeJ_P0072923 Pole protein_coding protein_coding MGP_C3HHeJ_T0072924.1 MGP_C3HHeJ_G0029581.1 mouse_genomes_project 5 112289572 112293566 + Pole protein_coding retained_intron MGP_C3HHeJ_T0075156.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143771029 143781760 - MGP_C3HHeJ_P0075156 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0075157.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143773498 143783865 - MGP_C3HHeJ_P0075157 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0075158.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143775813 143776527 - Tmem184a protein_coding retained_intron MGP_C3HHeJ_T0075160.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143777036 143783624 - MGP_C3HHeJ_P0075160 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0075161.1 MGP_C3HHeJ_G0029988.1 mouse_genomes_project 5 143781524 143789365 - MGP_C3HHeJ_P0075161 Tmem184a protein_coding protein_coding MGP_C3HHeJ_T0070923.1 MGP_C3HHeJ_G0029179.1 mouse_genomes_project 5 34012778 34030274 - MGP_C3HHeJ_P0070923 Trmt44 protein_coding protein_coding MGP_C3HHeJ_T0070924.1 MGP_C3HHeJ_G0029179.1 mouse_genomes_project 5 34027695 34030255 - Trmt44 protein_coding retained_intron MGP_C3HHeJ_T0070925.1 MGP_C3HHeJ_G0029179.1 mouse_genomes_project 5 34027947 34029942 - MGP_C3HHeJ_P0070925 Trmt44 protein_coding protein_coding MGP_C3HHeJ_T0075266.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147046604 147075453 - MGP_C3HHeJ_P0075266 Fbxl18 protein_coding protein_coding MGP_C3HHeJ_T0075267.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147052199 147053308 - Fbxl18 protein_coding retained_intron MGP_C3HHeJ_T0075268.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147052212 147075270 - MGP_C3HHeJ_P0075268 Fbxl18 protein_coding protein_coding MGP_C3HHeJ_T0075269.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147052475 147052917 - Fbxl18 protein_coding processed_transcript MGP_C3HHeJ_T0075270.1 MGP_C3HHeJ_G0030015.1 mouse_genomes_project 5 147062703 147075453 - Fbxl18 protein_coding retained_intron MGP_C3HHeJ_T0004699.1 MGP_C3HHeJ_G0004051.1 mouse_genomes_project 5 112218603 112231207 + Gm15788 antisense antisense MGP_C3HHeJ_T0074202.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130716982 130738738 - MGP_C3HHeJ_P0074202 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074203.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130716985 130738548 - MGP_C3HHeJ_P0074203 Slc15a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074204.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130716985 130738740 - MGP_C3HHeJ_P0074204 Slc15a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074205.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130717974 130725984 - MGP_C3HHeJ_P0074205 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074206.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130723234 130754055 - MGP_C3HHeJ_P0074206 Slc15a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074207.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725085 130725911 - Slc15a4 protein_coding processed_transcript MGP_C3HHeJ_T0074208.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725085 130725911 - Slc15a4 protein_coding processed_transcript MGP_C3HHeJ_T0074209.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725111 130730656 - MGP_C3HHeJ_P0074209 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074210.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130725909 130738205 - Slc15a4 protein_coding processed_transcript MGP_C3HHeJ_T0074211.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130730097 130754072 - MGP_C3HHeJ_P0074211 Slc15a4 protein_coding protein_coding MGP_C3HHeJ_T0074212.1 MGP_C3HHeJ_G0029810.1 mouse_genomes_project 5 130735751 130738703 - Slc15a4 protein_coding retained_intron MGP_C3HHeJ_T0001705.1 MGP_C3HHeJ_G0001629.1 mouse_genomes_project 5 105425045 105427820 - TEC TEC MGP_C3HHeJ_T0098295.1 MGP_C3HHeJ_G0036507.1 mouse_genomes_project 5 92848042 92848171 - Gm22728 scaRNA scaRNA MGP_C3HHeJ_T0015001.1 MGP_C3HHeJ_G0013105.1 mouse_genomes_project 5 144464402 144464876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001510.1 MGP_C3HHeJ_G0001437.1 mouse_genomes_project 5 44224016 44225516 + TEC TEC MGP_C3HHeJ_T0014922.1 MGP_C3HHeJ_G0013026.1 mouse_genomes_project 5 108915141 108915886 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001449.1 MGP_C3HHeJ_G0001378.1 mouse_genomes_project 5 26659864 26661550 + TEC TEC MGP_C3HHeJ_T0075483.1 MGP_C3HHeJ_G0030059.1 mouse_genomes_project 5 149456920 149463656 - MGP_C3HHeJ_P0075483 Zkscan14 protein_coding protein_coding MGP_C3HHeJ_T0075484.1 MGP_C3HHeJ_G0030059.1 mouse_genomes_project 5 149457597 149463645 - MGP_C3HHeJ_P0075484 Zkscan14 protein_coding protein_coding MGP_C3HHeJ_T0075485.1 MGP_C3HHeJ_G0030059.1 mouse_genomes_project 5 149461413 149463656 - MGP_C3HHeJ_P0075485 Zkscan14 protein_coding protein_coding MGP_C3HHeJ_T0008004.1 MGP_C3HHeJ_G0006523.1 mouse_genomes_project 5 31650848 31669800 - Gm20465 lincRNA lincRNA MGP_C3HHeJ_T0074143.1 MGP_C3HHeJ_G0029798.1 mouse_genomes_project 5 127838864 127866835 - MGP_C3HHeJ_P0074143 Ccdc92 protein_coding protein_coding MGP_C3HHeJ_T0074144.1 MGP_C3HHeJ_G0029798.1 mouse_genomes_project 5 127840339 127866301 - MGP_C3HHeJ_P0074144 Ccdc92 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074145.1 MGP_C3HHeJ_G0029798.1 mouse_genomes_project 5 127840515 127855999 - MGP_C3HHeJ_P0074145 Ccdc92 protein_coding protein_coding MGP_C3HHeJ_T0069661.1 MGP_C3HHeJ_G0028967.1 mouse_genomes_project 5 781240 782680 - protein_coding processed_transcript MGP_C3HHeJ_T0100710.1 MGP_C3HHeJ_G0038904.1 mouse_genomes_project 5 84084123 84084255 - Gm25765 snoRNA snoRNA MGP_C3HHeJ_T0001754.1 MGP_C3HHeJ_G0001678.1 mouse_genomes_project 5 121132003 121133023 + TEC TEC MGP_C3HHeJ_T0014841.1 MGP_C3HHeJ_G0012945.1 mouse_genomes_project 5 73335054 73336042 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001522.1 MGP_C3HHeJ_G0001449.1 mouse_genomes_project 5 47224552 47225941 + TEC TEC MGP_C3HHeJ_T0014690.1 MGP_C3HHeJ_G0012794.1 mouse_genomes_project 5 13383897 13384141 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073892.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126116890 126124687 + Setd1b protein_coding retained_intron MGP_C3HHeJ_T0073893.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126116890 126144383 + MGP_C3HHeJ_P0073893 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0073894.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126116890 126143203 + MGP_C3HHeJ_P0073894 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0073895.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126117655 126143203 + MGP_C3HHeJ_P0073895 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0073896.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126138500 126156645 + Setd1b protein_coding retained_intron MGP_C3HHeJ_T0073897.1 MGP_C3HHeJ_G0029758.1 mouse_genomes_project 5 126139173 126139900 + MGP_C3HHeJ_P0073897 Setd1b protein_coding protein_coding MGP_C3HHeJ_T0017975.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153701558 153709126 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017976.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153702476 153704340 - 1810059H22Rik processed_transcript retained_intron MGP_C3HHeJ_T0017977.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153707517 153708620 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017978.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153707589 153719499 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017979.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153707808 153708596 - 1810059H22Rik processed_transcript retained_intron MGP_C3HHeJ_T0017980.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153708051 153713919 - 1810059H22Rik processed_transcript retained_intron MGP_C3HHeJ_T0017981.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153713586 153719513 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017982.1 MGP_C3HHeJ_G0015377.1 mouse_genomes_project 5 153714405 153719739 - 1810059H22Rik processed_transcript lincRNA MGP_C3HHeJ_T0075351.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147950972 147974035 - MGP_C3HHeJ_P0075351 Usp42 protein_coding protein_coding MGP_C3HHeJ_T0075352.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147954399 147956260 - Usp42 protein_coding processed_transcript MGP_C3HHeJ_T0075353.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147954414 147957834 - Usp42 protein_coding retained_intron MGP_C3HHeJ_T0075354.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147957050 147968681 - Usp42 protein_coding retained_intron MGP_C3HHeJ_T0075355.1 MGP_C3HHeJ_G0030033.1 mouse_genomes_project 5 147962299 147963592 - Usp42 protein_coding retained_intron MGP_C3HHeJ_T0004815.1 MGP_C3HHeJ_G0004132.1 mouse_genomes_project 5 151860383 151905824 - 2210019I11Rik antisense antisense MGP_C3HHeJ_T0004816.1 MGP_C3HHeJ_G0004132.1 mouse_genomes_project 5 151862546 151905805 - 2210019I11Rik antisense antisense MGP_C3HHeJ_T0004817.1 MGP_C3HHeJ_G0004132.1 mouse_genomes_project 5 151870462 151905298 - 2210019I11Rik antisense antisense MGP_C3HHeJ_T0074239.1 MGP_C3HHeJ_G0029817.1 mouse_genomes_project 5 132196228 132196815 + protein_coding processed_transcript MGP_C3HHeJ_T0074240.1 MGP_C3HHeJ_G0029817.1 mouse_genomes_project 5 132196298 132201223 + MGP_C3HHeJ_P0074240 protein_coding protein_coding MGP_C3HHeJ_T0102062.1 MGP_C3HHeJ_G0040027.1 mouse_genomes_project 5 153152892 153153622 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0075234.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610442 146613053 + MGP_C3HHeJ_P0075234 Ap5z1 protein_coding protein_coding MGP_C3HHeJ_T0075235.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610497 146619506 + Ap5z1 protein_coding processed_transcript MGP_C3HHeJ_T0075236.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610542 146616607 + MGP_C3HHeJ_P0075236 Ap5z1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075237.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610552 146626008 + MGP_C3HHeJ_P0075237 Ap5z1 protein_coding protein_coding MGP_C3HHeJ_T0075238.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610559 146625100 + Ap5z1 protein_coding retained_intron MGP_C3HHeJ_T0075239.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146610572 146625352 + MGP_C3HHeJ_P0075239 Ap5z1 protein_coding protein_coding MGP_C3HHeJ_T0075240.1 MGP_C3HHeJ_G0030008.1 mouse_genomes_project 5 146621396 146623051 + Ap5z1 protein_coding retained_intron MGP_C3HHeJ_T0001416.1 MGP_C3HHeJ_G0001346.1 mouse_genomes_project 5 10936313 10938994 + TEC TEC MGP_C3HHeJ_T0014968.1 MGP_C3HHeJ_G0013072.1 mouse_genomes_project 5 125637668 125638067 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001561.1 MGP_C3HHeJ_G0001487.1 mouse_genomes_project 5 51255522 51258383 + TEC TEC MGP_C3HHeJ_T0004621.1 MGP_C3HHeJ_G0003993.1 mouse_genomes_project 5 51462138 51464128 + Gm43683 antisense antisense MGP_C3HHeJ_T0014677.1 MGP_C3HHeJ_G0012781.1 mouse_genomes_project 5 6518842 6519084 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004589.1 MGP_C3HHeJ_G0003969.1 mouse_genomes_project 5 32517610 32535121 + 4930557J02Rik antisense antisense MGP_C3HHeJ_T0098151.1 MGP_C3HHeJ_G0036363.1 mouse_genomes_project 5 121845158 121845275 + n-R5s175 rRNA rRNA MGP_C3HHeJ_T0100732.1 MGP_C3HHeJ_G0038926.1 mouse_genomes_project 5 151415856 151415927 + Gm25091 snoRNA snoRNA MGP_C3HHeJ_T0074623.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267272 139279184 + MGP_C3HHeJ_P0074623 Mdh2 protein_coding protein_coding MGP_C3HHeJ_T0074624.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267428 139269034 + Mdh2 protein_coding retained_intron MGP_C3HHeJ_T0074625.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267454 139279191 + MGP_C3HHeJ_P0074625 Mdh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074626.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267469 139273407 + Mdh2 protein_coding retained_intron MGP_C3HHeJ_T0074627.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267477 139276444 + MGP_C3HHeJ_P0074627 Mdh2 protein_coding protein_coding MGP_C3HHeJ_T0074628.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267481 139275139 + MGP_C3HHeJ_P0074628 Mdh2 protein_coding protein_coding MGP_C3HHeJ_T0074629.1 MGP_C3HHeJ_G0029884.1 mouse_genomes_project 5 139267514 139272545 + Mdh2 protein_coding retained_intron MGP_C3HHeJ_T0001738.1 MGP_C3HHeJ_G0001662.1 mouse_genomes_project 5 117254159 117254717 + TEC TEC MGP_C3HHeJ_T0073519.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122703573 122789121 + MGP_C3HHeJ_P0073519 Rbm19 protein_coding protein_coding MGP_C3HHeJ_T0073520.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122703625 122706090 + Rbm19 protein_coding retained_intron MGP_C3HHeJ_T0073521.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122703628 122789119 + MGP_C3HHeJ_P0073521 Rbm19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073522.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122705704 122707402 + Rbm19 protein_coding retained_intron MGP_C3HHeJ_T0073523.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122745914 122789111 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073524.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122751886 122788333 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073525.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122757531 122776400 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073526.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122759125 122789117 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073527.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122762316 122788130 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0073528.1 MGP_C3HHeJ_G0029695.1 mouse_genomes_project 5 122764941 122788109 + Rbm19 protein_coding processed_transcript MGP_C3HHeJ_T0004613.1 MGP_C3HHeJ_G0003988.1 mouse_genomes_project 5 43278520 43298500 + Gm43507 antisense antisense MGP_C3HHeJ_T0004614.1 MGP_C3HHeJ_G0003988.1 mouse_genomes_project 5 43289462 43299911 + Gm43507 antisense antisense MGP_C3HHeJ_T0075050.1 MGP_C3HHeJ_G0029968.1 mouse_genomes_project 5 142530701 142550957 + MGP_C3HHeJ_P0075050 A430033K04Rik protein_coding protein_coding MGP_C3HHeJ_T0075051.1 MGP_C3HHeJ_G0029968.1 mouse_genomes_project 5 142530718 142562603 + MGP_C3HHeJ_P0075051 A430033K04Rik protein_coding protein_coding MGP_C3HHeJ_T0075052.1 MGP_C3HHeJ_G0029968.1 mouse_genomes_project 5 142530736 142558997 + MGP_C3HHeJ_P0075052 A430033K04Rik protein_coding protein_coding MGP_C3HHeJ_T0101236.1 MGP_C3HHeJ_G0039364.1 mouse_genomes_project 5 117082618 117083238 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0014830.1 MGP_C3HHeJ_G0012934.1 mouse_genomes_project 5 67103274 67103566 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014747.1 MGP_C3HHeJ_G0012851.1 mouse_genomes_project 5 27924267 27925627 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001495.1 MGP_C3HHeJ_G0001422.1 mouse_genomes_project 5 42557917 42558459 - TEC TEC MGP_C3HHeJ_T0011514.1 MGP_C3HHeJ_G0009647.1 mouse_genomes_project 5 114274045 114274180 - Gm27357 misc_RNA misc_RNA MGP_C3HHeJ_T0073269.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198230 117214003 + MGP_C3HHeJ_P0073269 Oasl1 protein_coding protein_coding MGP_C3HHeJ_T0073270.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198254 117214006 + MGP_C3HHeJ_P0073270 Oasl1 protein_coding protein_coding MGP_C3HHeJ_T0073271.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198412 117210937 + Oasl1 protein_coding processed_transcript MGP_C3HHeJ_T0073272.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117198425 117211029 + Oasl1 protein_coding processed_transcript MGP_C3HHeJ_T0073273.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117204829 117208347 + Oasl1 protein_coding retained_intron MGP_C3HHeJ_T0073274.1 MGP_C3HHeJ_G0029647.1 mouse_genomes_project 5 117210986 117213778 + Oasl1 protein_coding processed_transcript MGP_C3HHeJ_T0075393.1 MGP_C3HHeJ_G0030042.1 mouse_genomes_project 5 148304257 148395859 + MGP_C3HHeJ_P0075393 Lmtk2 protein_coding protein_coding MGP_C3HHeJ_T0015025.1 MGP_C3HHeJ_G0013129.1 mouse_genomes_project 5 151961375 151961841 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008088.1 MGP_C3HHeJ_G0006586.1 mouse_genomes_project 5 75114428 75153753 + Gm19583 lincRNA lincRNA MGP_C3HHeJ_T0001849.1 MGP_C3HHeJ_G0001771.1 mouse_genomes_project 5 140078411 140085348 - TEC TEC MGP_C3HHeJ_T0070908.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493546 33518917 + MGP_C3HHeJ_P0070908 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070909.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493642 33518917 + MGP_C3HHeJ_P0070909 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070910.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493668 33504603 + MGP_C3HHeJ_P0070910 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070911.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33493857 33525792 + MGP_C3HHeJ_P0070911 Dok7 protein_coding protein_coding MGP_C3HHeJ_T0070912.1 MGP_C3HHeJ_G0029174.1 mouse_genomes_project 5 33512910 33518917 + Dok7 protein_coding retained_intron MGP_C3HHeJ_T0074597.1 MGP_C3HHeJ_G0029879.1 mouse_genomes_project 5 139036885 139039998 - MGP_C3HHeJ_P0074597 Ccl24 protein_coding protein_coding MGP_C3HHeJ_T0074598.1 MGP_C3HHeJ_G0029879.1 mouse_genomes_project 5 139037528 139039998 - MGP_C3HHeJ_P0074598 Ccl24 protein_coding protein_coding MGP_C3HHeJ_T0073510.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122233837 122236830 + Tbx3 protein_coding retained_intron MGP_C3HHeJ_T0073511.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122233837 122247807 + MGP_C3HHeJ_P0073511 Tbx3 protein_coding protein_coding MGP_C3HHeJ_T0073512.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122234030 122247969 + MGP_C3HHeJ_P0073512 Tbx3 protein_coding protein_coding MGP_C3HHeJ_T0073513.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122234186 122247969 + MGP_C3HHeJ_P0073513 Tbx3 protein_coding protein_coding MGP_C3HHeJ_T0073514.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122238611 122243851 + Tbx3 protein_coding retained_intron MGP_C3HHeJ_T0073515.1 MGP_C3HHeJ_G0029693.1 mouse_genomes_project 5 122243469 122244053 + Tbx3 protein_coding processed_transcript MGP_C3HHeJ_T0001488.1 MGP_C3HHeJ_G0001415.1 mouse_genomes_project 5 41860838 41862050 + TEC TEC MGP_C3HHeJ_T0014998.1 MGP_C3HHeJ_G0013102.1 mouse_genomes_project 5 143196953 143198784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075526.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151146122 151148129 - Gpr12 protein_coding retained_intron MGP_C3HHeJ_T0075527.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151146124 151148965 - MGP_C3HHeJ_P0075527 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0075528.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151146476 151148557 - MGP_C3HHeJ_P0075528 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0075529.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151147195 151148544 - MGP_C3HHeJ_P0075529 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0075530.1 MGP_C3HHeJ_G0030073.1 mouse_genomes_project 5 151147379 151148568 - MGP_C3HHeJ_P0075530 Gpr12 protein_coding protein_coding MGP_C3HHeJ_T0069910.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18405602 18534373 - MGP_C3HHeJ_P0069910 Phtf2 protein_coding protein_coding MGP_C3HHeJ_T0069911.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18406602 18420958 - MGP_C3HHeJ_P0069911 Phtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069912.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18429230 18507355 - Phtf2 protein_coding processed_transcript MGP_C3HHeJ_T0069913.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18429233 18452420 - MGP_C3HHeJ_P0069913 Phtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069914.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18435457 18534326 - Phtf2 protein_coding retained_intron MGP_C3HHeJ_T0069915.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18440012 18534327 - Phtf2 protein_coding retained_intron MGP_C3HHeJ_T0069916.1 MGP_C3HHeJ_G0029006.1 mouse_genomes_project 5 18452396 18534294 - MGP_C3HHeJ_P0069916 Phtf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007963.1 MGP_C3HHeJ_G0006497.1 mouse_genomes_project 5 13414773 13424382 - Gm3510 lincRNA lincRNA MGP_C3HHeJ_T0071019.1 MGP_C3HHeJ_G0029197.1 mouse_genomes_project 5 35435451 35462418 - MGP_C3HHeJ_P0071019 Wfs1 protein_coding protein_coding MGP_C3HHeJ_T0071020.1 MGP_C3HHeJ_G0029197.1 mouse_genomes_project 5 35435454 35462146 - MGP_C3HHeJ_P0071020 Wfs1 protein_coding protein_coding MGP_C3HHeJ_T0071021.1 MGP_C3HHeJ_G0029197.1 mouse_genomes_project 5 35437870 35447777 - MGP_C3HHeJ_P0071021 Wfs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014990.1 MGP_C3HHeJ_G0013094.1 mouse_genomes_project 5 141563070 141563822 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014700.1 MGP_C3HHeJ_G0012804.1 mouse_genomes_project 5 18229501 18229806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070327.1 MGP_C3HHeJ_G0029089.1 mouse_genomes_project 5 28634955 28704422 - MGP_C3HHeJ_P0070327 Cib4 protein_coding protein_coding MGP_C3HHeJ_T0008117.1 MGP_C3HHeJ_G0006610.1 mouse_genomes_project 5 92523188 92527758 - Gm28271 lincRNA lincRNA MGP_C3HHeJ_T0071710.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72428742 72475869 - MGP_C3HHeJ_P0071710 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071711.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72428742 72446448 - MGP_C3HHeJ_P0071711 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071712.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72429161 72469445 - MGP_C3HHeJ_P0071712 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071713.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72442427 72469450 - MGP_C3HHeJ_P0071713 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071714.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72446322 72461217 - MGP_C3HHeJ_P0071714 Cnga1 protein_coding protein_coding MGP_C3HHeJ_T0071715.1 MGP_C3HHeJ_G0029315.1 mouse_genomes_project 5 72475388 72477398 - Cnga1 protein_coding retained_intron MGP_C3HHeJ_T0007966.1 MGP_C3HHeJ_G0006500.1 mouse_genomes_project 5 20164590 20168425 - Gm43657 lincRNA lincRNA MGP_C3HHeJ_T0014833.1 MGP_C3HHeJ_G0012937.1 mouse_genomes_project 5 69196277 69196869 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075061.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142892888 142912608 - MGP_C3HHeJ_P0075061 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075062.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142893390 142912524 - MGP_C3HHeJ_P0075062 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075063.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142893807 142914885 - MGP_C3HHeJ_P0075063 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075064.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142893836 142916168 - MGP_C3HHeJ_P0075064 Pdgfa protein_coding protein_coding MGP_C3HHeJ_T0075065.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142894010 142911852 - Pdgfa protein_coding processed_transcript MGP_C3HHeJ_T0075066.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142903836 142912055 - Pdgfa protein_coding processed_transcript MGP_C3HHeJ_T0075067.1 MGP_C3HHeJ_G0029971.1 mouse_genomes_project 5 142906007 142914799 - Pdgfa protein_coding processed_transcript MGP_C3HHeJ_T0102054.1 MGP_C3HHeJ_G0040019.1 mouse_genomes_project 5 140582678 140584581 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100719.1 MGP_C3HHeJ_G0038913.1 mouse_genomes_project 5 101105423 101105499 + Gm26252 snoRNA snoRNA MGP_C3HHeJ_T0071481.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64964029 64988385 - MGP_C3HHeJ_P0071481 Ugdh protein_coding protein_coding MGP_C3HHeJ_T0071482.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64964032 64976299 - Ugdh protein_coding retained_intron MGP_C3HHeJ_T0071483.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64968360 64973655 - Ugdh protein_coding retained_intron MGP_C3HHeJ_T0071484.1 MGP_C3HHeJ_G0029278.1 mouse_genomes_project 5 64974192 64979007 - MGP_C3HHeJ_P0071484 Ugdh protein_coding protein_coding MGP_C3HHeJ_T0074183.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128468831 128489101 - MGP_C3HHeJ_P0074183 Dhx37 protein_coding protein_coding MGP_C3HHeJ_T0074184.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128469740 128470850 - MGP_C3HHeJ_P0074184 Dhx37 protein_coding protein_coding MGP_C3HHeJ_T0074185.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128471252 128473802 - Dhx37 protein_coding retained_intron MGP_C3HHeJ_T0074186.1 MGP_C3HHeJ_G0029805.1 mouse_genomes_project 5 128478515 128481708 - MGP_C3HHeJ_P0074186 Dhx37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010611.1 MGP_C3HHeJ_G0008744.1 mouse_genomes_project 5 93608005 93608117 - Mir1961 miRNA miRNA MGP_C3HHeJ_T0017932.1 MGP_C3HHeJ_G0015362.1 mouse_genomes_project 5 65339625 65342510 - N4bp2os processed_transcript antisense MGP_C3HHeJ_T0017933.1 MGP_C3HHeJ_G0015362.1 mouse_genomes_project 5 65340079 65342001 - N4bp2os processed_transcript antisense MGP_C3HHeJ_T0017934.1 MGP_C3HHeJ_G0015362.1 mouse_genomes_project 5 65341016 65343023 - N4bp2os processed_transcript retained_intron MGP_C3HHeJ_T0004596.1 MGP_C3HHeJ_G0003976.1 mouse_genomes_project 5 34181612 34183543 + Gm15650 antisense antisense MGP_C3HHeJ_T0001520.1 MGP_C3HHeJ_G0001447.1 mouse_genomes_project 5 47099960 47102537 + TEC TEC MGP_C3HHeJ_T0074811.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140919453 140924194 - MGP_C3HHeJ_P0074811 Trip6 protein_coding protein_coding MGP_C3HHeJ_T0074812.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140922742 140923981 - MGP_C3HHeJ_P0074812 Trip6 protein_coding protein_coding MGP_C3HHeJ_T0074813.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140922769 140923952 - Trip6 protein_coding retained_intron MGP_C3HHeJ_T0074814.1 MGP_C3HHeJ_G0029917.1 mouse_genomes_project 5 140923148 140923998 - Trip6 protein_coding processed_transcript MGP_C3HHeJ_T0075750.1 MGP_C3HHeJ_G0030112.1 mouse_genomes_project 5 155957191 156319913 - MGP_C3HHeJ_P0075750 Gm42906 protein_coding protein_coding MGP_C3HHeJ_T0017992.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156255088 156268548 + processed_transcript retained_intron MGP_C3HHeJ_T0017993.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156255122 156282525 + processed_transcript lincRNA MGP_C3HHeJ_T0017994.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156255131 156305842 + processed_transcript lincRNA MGP_C3HHeJ_T0017995.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156286504 156305635 + processed_transcript lincRNA MGP_C3HHeJ_T0017996.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156292864 156330381 + processed_transcript lincRNA MGP_C3HHeJ_T0017997.1 MGP_C3HHeJ_G0015382.1 mouse_genomes_project 5 156292886 156322223 + processed_transcript lincRNA MGP_C3HHeJ_T0008159.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105927671 105961876 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008160.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105927805 105942721 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008161.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105945529 105957531 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008162.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105946075 105956938 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0008163.1 MGP_C3HHeJ_G0006643.1 mouse_genomes_project 5 105946117 105961173 + D930016D06Rik lincRNA lincRNA MGP_C3HHeJ_T0001640.1 MGP_C3HHeJ_G0001565.1 mouse_genomes_project 5 68938716 68941107 - TEC TEC MGP_C3HHeJ_T0098502.1 MGP_C3HHeJ_G0036707.1 mouse_genomes_project 5 118970560 118972598 - sense_intronic sense_intronic MGP_C3HHeJ_T0072070.1 MGP_C3HHeJ_G0029387.1 mouse_genomes_project 5 88134330 88151619 - MGP_C3HHeJ_P0072070 Sult1e1 protein_coding protein_coding MGP_C3HHeJ_T0071131.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37181100 37197426 - MGP_C3HHeJ_P0071131 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0071132.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37181102 37197350 - MGP_C3HHeJ_P0071132 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0071133.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37186788 37197426 - MGP_C3HHeJ_P0071133 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0071134.1 MGP_C3HHeJ_G0029214.1 mouse_genomes_project 5 37187239 37197357 - MGP_C3HHeJ_P0071134 Zfp518b protein_coding protein_coding MGP_C3HHeJ_T0070336.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829169 28837150 + MGP_C3HHeJ_P0070336 Cenpa protein_coding protein_coding MGP_C3HHeJ_T0070337.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829289 28836698 + MGP_C3HHeJ_P0070337 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070338.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829304 28836635 + MGP_C3HHeJ_P0070338 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070339.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829327 28836729 + Cenpa protein_coding retained_intron MGP_C3HHeJ_T0070340.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829335 28832164 + MGP_C3HHeJ_P0070340 Cenpa protein_coding protein_coding MGP_C3HHeJ_T0070341.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829349 28836384 + MGP_C3HHeJ_P0070341 Cenpa protein_coding protein_coding MGP_C3HHeJ_T0070342.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829352 28833085 + Cenpa protein_coding retained_intron MGP_C3HHeJ_T0070343.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829366 28836729 + MGP_C3HHeJ_P0070343 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070344.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28829390 28836706 + MGP_C3HHeJ_P0070344 Cenpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070345.1 MGP_C3HHeJ_G0029092.1 mouse_genomes_project 5 28834274 28836522 + Cenpa protein_coding retained_intron MGP_C3HHeJ_T0073667.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124503475 124530397 + MGP_C3HHeJ_P0073667 Brap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073668.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124503502 124506874 + Brap protein_coding retained_intron MGP_C3HHeJ_T0073669.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124503628 124530403 + MGP_C3HHeJ_P0073669 Brap protein_coding protein_coding MGP_C3HHeJ_T0073670.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124504941 124518272 + MGP_C3HHeJ_P0073670 Brap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073671.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124504950 124508542 + MGP_C3HHeJ_P0073671 Brap protein_coding protein_coding MGP_C3HHeJ_T0073672.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124504980 124506606 + Brap protein_coding retained_intron MGP_C3HHeJ_T0073673.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124509426 124530402 + Brap protein_coding processed_transcript MGP_C3HHeJ_T0073674.1 MGP_C3HHeJ_G0029729.1 mouse_genomes_project 5 124525977 124530399 + Brap protein_coding retained_intron MGP_C3HHeJ_T0014715.1 MGP_C3HHeJ_G0012819.1 mouse_genomes_project 5 20503668 20504041 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008339.1 MGP_C3HHeJ_G0006757.1 mouse_genomes_project 5 143474579 143492608 + 4930500L23Rik lincRNA lincRNA MGP_C3HHeJ_T0014725.1 MGP_C3HHeJ_G0012829.1 mouse_genomes_project 5 21944406 21947266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004680.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166488 103175177 + Gm20548 antisense antisense MGP_C3HHeJ_T0004681.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166514 103173255 + Gm20548 antisense antisense MGP_C3HHeJ_T0004682.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166524 103173218 + Gm20548 antisense antisense MGP_C3HHeJ_T0004683.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103166530 103175388 + Gm20548 antisense antisense MGP_C3HHeJ_T0004684.1 MGP_C3HHeJ_G0004039.1 mouse_genomes_project 5 103169132 103173310 + Gm20548 antisense antisense MGP_C3HHeJ_T0001498.1 MGP_C3HHeJ_G0001425.1 mouse_genomes_project 5 42835550 42836365 + TEC TEC MGP_C3HHeJ_T0014917.1 MGP_C3HHeJ_G0013021.1 mouse_genomes_project 5 107913255 107914111 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072038.1 MGP_C3HHeJ_G0029372.1 mouse_genomes_project 5 87182138 87200542 - MGP_C3HHeJ_P0072038 Tmprss11b protein_coding protein_coding MGP_C3HHeJ_T0008039.1 MGP_C3HHeJ_G0006546.1 mouse_genomes_project 5 43036967 43052162 - Gm42985 lincRNA lincRNA MGP_C3HHeJ_T0071151.1 MGP_C3HHeJ_G0029220.1 mouse_genomes_project 5 40682949 40824143 + MGP_C3HHeJ_P0071151 Gm16223 protein_coding protein_coding MGP_C3HHeJ_T0001703.1 MGP_C3HHeJ_G0001627.1 mouse_genomes_project 5 104694641 104695777 + TEC TEC MGP_C3HHeJ_T0099497.1 MGP_C3HHeJ_G0037691.1 mouse_genomes_project 5 155412345 155412446 - Gm23641 snRNA snRNA MGP_C3HHeJ_T0072844.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110468610 110474282 - MGP_C3HHeJ_P0072844 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0072845.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110469265 110473466 - MGP_C3HHeJ_P0072845 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0072846.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110469282 110473466 - MGP_C3HHeJ_P0072846 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0072847.1 MGP_C3HHeJ_G0029561.1 mouse_genomes_project 5 110470815 110473498 - MGP_C3HHeJ_P0072847 Slc26a1 protein_coding protein_coding MGP_C3HHeJ_T0074198.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130354711 130686349 + MGP_C3HHeJ_P0074198 Tmem132c protein_coding protein_coding MGP_C3HHeJ_T0074199.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130354729 130393784 + Tmem132c protein_coding processed_transcript MGP_C3HHeJ_T0074200.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130672069 130685423 + Tmem132c protein_coding processed_transcript MGP_C3HHeJ_T0074201.1 MGP_C3HHeJ_G0029809.1 mouse_genomes_project 5 130673820 130685043 + MGP_C3HHeJ_P0074201 Tmem132c protein_coding protein_coding MGP_C3HHeJ_T0014671.1 MGP_C3HHeJ_G0012775.1 mouse_genomes_project 5 4382002 4382588 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010612.1 MGP_C3HHeJ_G0008745.1 mouse_genomes_project 5 99669092 99669201 - Mir703 miRNA miRNA MGP_C3HHeJ_T0008151.1 MGP_C3HHeJ_G0006636.1 mouse_genomes_project 5 103018569 103024295 - Gm43271 lincRNA lincRNA MGP_C3HHeJ_T0007981.1 MGP_C3HHeJ_G0006508.1 mouse_genomes_project 5 22959768 22973334 + 1500035N22Rik lincRNA lincRNA MGP_C3HHeJ_T0001789.1 MGP_C3HHeJ_G0001713.1 mouse_genomes_project 5 127475294 127477346 + TEC TEC MGP_C3HHeJ_T0001790.1 MGP_C3HHeJ_G0001713.1 mouse_genomes_project 5 127476302 127477475 + TEC TEC MGP_C3HHeJ_T0071413.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63580324 63610948 + MGP_C3HHeJ_P0071413 Pgm1 protein_coding protein_coding MGP_C3HHeJ_T0071414.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63590696 63598901 + MGP_C3HHeJ_P0071414 Pgm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071415.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63594579 63596476 + Pgm1 protein_coding retained_intron MGP_C3HHeJ_T0071416.1 MGP_C3HHeJ_G0029265.1 mouse_genomes_project 5 63601334 63610761 + MGP_C3HHeJ_P0071416 Pgm1 protein_coding protein_coding MGP_C3HHeJ_T0099423.1 MGP_C3HHeJ_G0037617.1 mouse_genomes_project 5 20404888 20404953 - Gm24512 snRNA snRNA MGP_C3HHeJ_T0014858.1 MGP_C3HHeJ_G0012962.1 mouse_genomes_project 5 79763405 79763423 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008008.1 MGP_C3HHeJ_G0006527.1 mouse_genomes_project 5 33813644 33820445 + 4930478P22Rik lincRNA lincRNA MGP_C3HHeJ_T0008009.1 MGP_C3HHeJ_G0006527.1 mouse_genomes_project 5 33813656 33820681 + 4930478P22Rik lincRNA lincRNA MGP_C3HHeJ_T0008010.1 MGP_C3HHeJ_G0006527.1 mouse_genomes_project 5 33813662 33819907 + 4930478P22Rik lincRNA lincRNA MGP_C3HHeJ_T0070154.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22677502 22700986 - MGP_C3HHeJ_P0070154 Wdr86 protein_coding protein_coding MGP_C3HHeJ_T0070155.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22678029 22700939 - Wdr86 protein_coding retained_intron MGP_C3HHeJ_T0070156.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22678033 22679142 - Wdr86 protein_coding retained_intron MGP_C3HHeJ_T0070157.1 MGP_C3HHeJ_G0029051.1 mouse_genomes_project 5 22678402 22681346 - MGP_C3HHeJ_P0070157 Wdr86 protein_coding protein_coding MGP_C3HHeJ_T0073585.1 MGP_C3HHeJ_G0029711.1 mouse_genomes_project 5 123466382 123484192 - MGP_C3HHeJ_P0073585 protein_coding protein_coding MGP_C3HHeJ_T0010589.1 MGP_C3HHeJ_G0008722.1 mouse_genomes_project 5 33156741 33156861 - Mir467g miRNA miRNA MGP_C3HHeJ_T0014769.1 MGP_C3HHeJ_G0012873.1 mouse_genomes_project 5 35777134 35777285 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097910.1 MGP_C3HHeJ_G0036122.1 mouse_genomes_project 5 118396847 118397015 - pseudogene pseudogene MGP_C3HHeJ_T0073705.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124720712 124934252 - MGP_C3HHeJ_P0073705 protein_coding protein_coding MGP_C3HHeJ_T0073706.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124724441 124932226 - MGP_C3HHeJ_P0073706 protein_coding protein_coding MGP_C3HHeJ_T0073707.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124724533 124730406 - protein_coding retained_intron MGP_C3HHeJ_T0073708.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124724533 124798263 - MGP_C3HHeJ_P0073708 protein_coding protein_coding MGP_C3HHeJ_T0073709.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124738847 124740083 - protein_coding retained_intron MGP_C3HHeJ_T0073710.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124745573 124784674 - protein_coding processed_transcript MGP_C3HHeJ_T0073711.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124745579 124763365 - protein_coding processed_transcript MGP_C3HHeJ_T0073712.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124751987 124934503 - MGP_C3HHeJ_P0073712 protein_coding protein_coding MGP_C3HHeJ_T0073713.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124754654 124880403 - MGP_C3HHeJ_P0073713 protein_coding protein_coding MGP_C3HHeJ_T0073714.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124763392 124786335 - protein_coding processed_transcript MGP_C3HHeJ_T0073715.1 MGP_C3HHeJ_G0029733.1 mouse_genomes_project 5 124798237 124932292 - protein_coding processed_transcript MGP_C3HHeJ_T0099443.1 MGP_C3HHeJ_G0037637.1 mouse_genomes_project 5 69483012 69483138 - Gm26044 snRNA snRNA MGP_C3HHeJ_T0071670.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70717649 70868044 - MGP_C3HHeJ_P0071670 Gabra2 protein_coding protein_coding MGP_C3HHeJ_T0071671.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70719533 70868004 - MGP_C3HHeJ_P0071671 Gabra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071672.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70725881 70785067 - Gabra2 protein_coding retained_intron MGP_C3HHeJ_T0071673.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70725987 70866841 - MGP_C3HHeJ_P0071673 Gabra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071674.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70739126 70867401 - Gabra2 protein_coding processed_transcript MGP_C3HHeJ_T0071675.1 MGP_C3HHeJ_G0029306.1 mouse_genomes_project 5 70863950 70867066 - Gabra2 protein_coding retained_intron MGP_C3HHeJ_T0014925.1 MGP_C3HHeJ_G0013029.1 mouse_genomes_project 5 109541928 109542214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001500.1 MGP_C3HHeJ_G0001427.1 mouse_genomes_project 5 43122689 43125959 - TEC TEC MGP_C3HHeJ_T0004674.1 MGP_C3HHeJ_G0004034.1 mouse_genomes_project 5 100895240 100897276 + 4930522N08Rik antisense antisense MGP_C3HHeJ_T0070414.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29236905 29241350 + MGP_C3HHeJ_P0070414 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070415.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29236914 29244103 + Atraid protein_coding retained_intron MGP_C3HHeJ_T0070416.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237228 29244109 + MGP_C3HHeJ_P0070416 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070417.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237238 29244107 + MGP_C3HHeJ_P0070417 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070418.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237241 29243479 + MGP_C3HHeJ_P0070418 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070419.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237252 29244104 + MGP_C3HHeJ_P0070419 Atraid protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070420.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29237315 29243830 + MGP_C3HHeJ_P0070420 Atraid protein_coding protein_coding MGP_C3HHeJ_T0070421.1 MGP_C3HHeJ_G0029104.1 mouse_genomes_project 5 29243355 29244109 + Atraid protein_coding processed_transcript MGP_C3HHeJ_T0004771.1 MGP_C3HHeJ_G0004100.1 mouse_genomes_project 5 131471704 131477703 + Gm42817 antisense antisense MGP_C3HHeJ_T0072138.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89213857 89291049 + MGP_C3HHeJ_P0072138 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072139.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89213857 89299688 + MGP_C3HHeJ_P0072139 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072140.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232650 89289281 + MGP_C3HHeJ_P0072140 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072141.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232673 89291050 + MGP_C3HHeJ_P0072141 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072142.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232714 89235750 + Rufy3 protein_coding retained_intron MGP_C3HHeJ_T0072143.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232715 89267547 + Rufy3 protein_coding retained_intron MGP_C3HHeJ_T0072144.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89232931 89289282 + MGP_C3HHeJ_P0072144 Rufy3 protein_coding protein_coding MGP_C3HHeJ_T0072145.1 MGP_C3HHeJ_G0029409.1 mouse_genomes_project 5 89295044 89296672 + Rufy3 protein_coding retained_intron MGP_C3HHeJ_T0099420.1 MGP_C3HHeJ_G0037614.1 mouse_genomes_project 5 17725137 17725241 + Gm23570 snRNA snRNA MGP_C3HHeJ_T0014847.1 MGP_C3HHeJ_G0012951.1 mouse_genomes_project 5 75354695 75356085 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102033.1 MGP_C3HHeJ_G0039998.1 mouse_genomes_project 5 68256578 68282738 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0069730.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2719496 2759007 - MGP_C3HHeJ_P0069730 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069731.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2719498 2747578 - MGP_C3HHeJ_P0069731 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069732.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2720621 2758489 - MGP_C3HHeJ_P0069732 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069733.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2735452 2758481 - MGP_C3HHeJ_P0069733 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069734.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2736005 2758496 - MGP_C3HHeJ_P0069734 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069735.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2736239 2741800 - Steap2 protein_coding processed_transcript MGP_C3HHeJ_T0069736.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2736244 2758489 - MGP_C3HHeJ_P0069736 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069737.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2738019 2758755 - MGP_C3HHeJ_P0069737 Steap2 protein_coding protein_coding MGP_C3HHeJ_T0069738.1 MGP_C3HHeJ_G0028976.1 mouse_genomes_project 5 2740609 2758962 - Steap2 protein_coding retained_intron MGP_C3HHeJ_T0001609.1 MGP_C3HHeJ_G0001534.1 mouse_genomes_project 5 65451285 65451993 + TEC TEC MGP_C3HHeJ_T0074782.1 MGP_C3HHeJ_G0029913.1 mouse_genomes_project 5 140853132 140856742 - MGP_C3HHeJ_P0074782 protein_coding protein_coding MGP_C3HHeJ_T0074783.1 MGP_C3HHeJ_G0029913.1 mouse_genomes_project 5 140854359 140861469 - MGP_C3HHeJ_P0074783 protein_coding protein_coding MGP_C3HHeJ_T0075620.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153201667 153249662 - MGP_C3HHeJ_P0075620 Ubl3 protein_coding protein_coding MGP_C3HHeJ_T0075621.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153202161 153249789 - MGP_C3HHeJ_P0075621 Ubl3 protein_coding protein_coding MGP_C3HHeJ_T0075622.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153202174 153249789 - MGP_C3HHeJ_P0075622 Ubl3 protein_coding protein_coding MGP_C3HHeJ_T0075623.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153203013 153234586 - Ubl3 protein_coding processed_transcript MGP_C3HHeJ_T0075624.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153206297 153248650 - Ubl3 protein_coding processed_transcript MGP_C3HHeJ_T0075625.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153206307 153248642 - Ubl3 protein_coding processed_transcript MGP_C3HHeJ_T0075626.1 MGP_C3HHeJ_G0030092.1 mouse_genomes_project 5 153243570 153249698 - Ubl3 protein_coding retained_intron MGP_C3HHeJ_T0001526.1 MGP_C3HHeJ_G0001453.1 mouse_genomes_project 5 47693242 47695509 - TEC TEC MGP_C3HHeJ_T0074021.1 MGP_C3HHeJ_G0029779.1 mouse_genomes_project 5 127025631 127053331 - MGP_C3HHeJ_P0074021 Vps37b protein_coding protein_coding MGP_C3HHeJ_T0074022.1 MGP_C3HHeJ_G0029779.1 mouse_genomes_project 5 127027126 127032702 - Vps37b protein_coding processed_transcript MGP_C3HHeJ_T0074023.1 MGP_C3HHeJ_G0029779.1 mouse_genomes_project 5 127048802 127053319 - Vps37b protein_coding processed_transcript MGP_C3HHeJ_T0073097.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115741627 115780776 - MGP_C3HHeJ_P0073097 Cmklr1 protein_coding protein_coding MGP_C3HHeJ_T0073098.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115743304 115758229 - MGP_C3HHeJ_P0073098 Cmklr1 protein_coding protein_coding MGP_C3HHeJ_T0073099.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115744195 115774016 - MGP_C3HHeJ_P0073099 Cmklr1 protein_coding protein_coding MGP_C3HHeJ_T0073100.1 MGP_C3HHeJ_G0029615.1 mouse_genomes_project 5 115761922 115780746 - Cmklr1 protein_coding processed_transcript MGP_C3HHeJ_T0072753.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109614255 109624028 + MGP_C3HHeJ_P0072753 protein_coding protein_coding MGP_C3HHeJ_T0072754.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109614325 109616948 + protein_coding retained_intron MGP_C3HHeJ_T0072755.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109614628 109617653 + MGP_C3HHeJ_P0072755 protein_coding protein_coding MGP_C3HHeJ_T0072756.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109616093 109616710 + protein_coding retained_intron MGP_C3HHeJ_T0072757.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109616938 109623073 + protein_coding retained_intron MGP_C3HHeJ_T0072758.1 MGP_C3HHeJ_G0029545.1 mouse_genomes_project 5 109619411 109623078 + protein_coding retained_intron MGP_C3HHeJ_T0099464.1 MGP_C3HHeJ_G0037658.1 mouse_genomes_project 5 98046275 98046470 + Gm24623 snRNA snRNA MGP_C3HHeJ_T0014859.1 MGP_C3HHeJ_G0012963.1 mouse_genomes_project 5 79834024 79835135 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070006.1 MGP_C3HHeJ_G0029025.1 mouse_genomes_project 5 20716712 20717474 - MGP_C3HHeJ_P0070006 Rpl10 protein_coding protein_coding MGP_C3HHeJ_T0004653.1 MGP_C3HHeJ_G0004021.1 mouse_genomes_project 5 87248805 87279581 + Gm16579 antisense antisense MGP_C3HHeJ_T0075304.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448122 147461832 + MGP_C3HHeJ_P0075304 Zfp12 protein_coding protein_coding MGP_C3HHeJ_T0075305.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448133 147462718 + MGP_C3HHeJ_P0075305 Zfp12 protein_coding protein_coding MGP_C3HHeJ_T0075306.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448206 147461840 + MGP_C3HHeJ_P0075306 Zfp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075307.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147448738 147453964 + MGP_C3HHeJ_P0075307 Zfp12 protein_coding protein_coding MGP_C3HHeJ_T0075308.1 MGP_C3HHeJ_G0030022.1 mouse_genomes_project 5 147453922 147458514 + Zfp12 protein_coding processed_transcript MGP_C3HHeJ_T0073441.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119545803 119707500 + MGP_C3HHeJ_P0073441 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073442.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119552627 119633410 + MGP_C3HHeJ_P0073442 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073443.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563193 119625401 + Taok3 protein_coding retained_intron MGP_C3HHeJ_T0073444.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563193 119707358 + MGP_C3HHeJ_P0073444 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073445.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563200 119707502 + MGP_C3HHeJ_P0073445 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073446.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563220 119671085 + Taok3 protein_coding retained_intron MGP_C3HHeJ_T0073447.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563223 119683850 + MGP_C3HHeJ_P0073447 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073448.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119563246 119617527 + Taok3 protein_coding retained_intron MGP_C3HHeJ_T0073449.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119633391 119658217 + MGP_C3HHeJ_P0073449 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0073450.1 MGP_C3HHeJ_G0029679.1 mouse_genomes_project 5 119670096 119706150 + MGP_C3HHeJ_P0073450 Taok3 protein_coding protein_coding MGP_C3HHeJ_T0098507.1 MGP_C3HHeJ_G0036711.1 mouse_genomes_project 5 134389165 134393856 - Gm43166 sense_intronic sense_intronic MGP_C3HHeJ_T0074504.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352074 138363318 + MGP_C3HHeJ_P0074504 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074505.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352079 138362404 + MGP_C3HHeJ_P0074505 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074506.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352079 138362404 + MGP_C3HHeJ_P0074506 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074507.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352091 138362404 + MGP_C3HHeJ_P0074507 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074508.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352098 138361883 + MGP_C3HHeJ_P0074508 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074509.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352112 138354131 + MGP_C3HHeJ_P0074509 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074510.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352230 138361315 + MGP_C3HHeJ_P0074510 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0074511.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138352490 138356984 + Wbscr27 protein_coding processed_transcript MGP_C3HHeJ_T0074512.1 MGP_C3HHeJ_G0029860.1 mouse_genomes_project 5 138361142 138361913 + MGP_C3HHeJ_P0074512 Wbscr27 protein_coding protein_coding MGP_C3HHeJ_T0001547.1 MGP_C3HHeJ_G0001473.1 mouse_genomes_project 5 48874348 48875498 - TEC TEC MGP_C3HHeJ_T0071417.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63641464 63658930 + MGP_C3HHeJ_P0071417 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071418.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63644750 63846746 + MGP_C3HHeJ_P0071418 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071419.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63645119 63846746 + MGP_C3HHeJ_P0071419 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071420.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63645510 63659671 + Tbc1d1 protein_coding retained_intron MGP_C3HHeJ_T0071421.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63645510 63846746 + MGP_C3HHeJ_P0071421 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071422.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63722923 63846746 + MGP_C3HHeJ_P0071422 Tbc1d1 protein_coding protein_coding MGP_C3HHeJ_T0071423.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63767538 63776855 + MGP_C3HHeJ_P0071423 Tbc1d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071424.1 MGP_C3HHeJ_G0029266.1 mouse_genomes_project 5 63790627 63846741 + Tbc1d1 protein_coding processed_transcript MGP_C3HHeJ_T0004720.1 MGP_C3HHeJ_G0004066.1 mouse_genomes_project 5 118374207 118380985 + Gm14508 antisense antisense MGP_C3HHeJ_T0074137.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127725023 127838750 + MGP_C3HHeJ_P0074137 Dnah10 protein_coding protein_coding MGP_C3HHeJ_T0074138.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127725023 127838755 + MGP_C3HHeJ_P0074138 Dnah10 protein_coding protein_coding MGP_C3HHeJ_T0074139.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127790630 127791061 + Dnah10 protein_coding processed_transcript MGP_C3HHeJ_T0074140.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127795450 127799952 + Dnah10 protein_coding processed_transcript MGP_C3HHeJ_T0074141.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127805076 127808300 + Dnah10 protein_coding retained_intron MGP_C3HHeJ_T0074142.1 MGP_C3HHeJ_G0029797.1 mouse_genomes_project 5 127808951 127838572 + Dnah10 protein_coding retained_intron MGP_C3HHeJ_T0073576.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123360091 123380431 - MGP_C3HHeJ_P0073576 Oas2 protein_coding protein_coding MGP_C3HHeJ_T0073577.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123360092 123380431 - MGP_C3HHeJ_P0073577 Oas2 protein_coding protein_coding MGP_C3HHeJ_T0073578.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123360094 123365336 - Oas2 protein_coding retained_intron MGP_C3HHeJ_T0073579.1 MGP_C3HHeJ_G0029708.1 mouse_genomes_project 5 123363044 123369148 - MGP_C3HHeJ_P0073579 Oas2 protein_coding protein_coding MGP_C3HHeJ_T0071868.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76211469 76224516 + Tmem165 protein_coding processed_transcript MGP_C3HHeJ_T0071869.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76211535 76239030 + MGP_C3HHeJ_P0071869 Tmem165 protein_coding protein_coding MGP_C3HHeJ_T0071870.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76229891 76235602 + Tmem165 protein_coding retained_intron MGP_C3HHeJ_T0071871.1 MGP_C3HHeJ_G0029341.1 mouse_genomes_project 5 76234566 76236477 + Tmem165 protein_coding processed_transcript MGP_C3HHeJ_T0007952.1 MGP_C3HHeJ_G0006488.1 mouse_genomes_project 5 49300 119103 + lincRNA lincRNA MGP_C3HHeJ_T0074261.1 MGP_C3HHeJ_G0029820.1 mouse_genomes_project 5 132791484 132818453 + MGP_C3HHeJ_P0074261 Mmp17 protein_coding protein_coding MGP_C3HHeJ_T0074262.1 MGP_C3HHeJ_G0029820.1 mouse_genomes_project 5 132804150 132809973 + Mmp17 protein_coding retained_intron MGP_C3HHeJ_T0001615.1 MGP_C3HHeJ_G0001540.1 mouse_genomes_project 5 65821551 65824501 + TEC TEC MGP_C3HHeJ_T0011496.1 MGP_C3HHeJ_G0009629.1 mouse_genomes_project 5 27834073 27834402 + Gm26346 misc_RNA misc_RNA MGP_C3HHeJ_T0100702.1 MGP_C3HHeJ_G0038896.1 mouse_genomes_project 5 61909676 61909808 - Gm24079 snoRNA snoRNA MGP_C3HHeJ_T0004626.1 MGP_C3HHeJ_G0003998.1 mouse_genomes_project 5 63404402 63405472 + Gm15819 antisense antisense MGP_C3HHeJ_T0069979.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19544966 19606642 - MGP_C3HHeJ_P0069979 Slc26a5 protein_coding protein_coding MGP_C3HHeJ_T0069980.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19544966 19603053 - MGP_C3HHeJ_P0069980 Slc26a5 protein_coding protein_coding MGP_C3HHeJ_T0069981.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19545329 19586840 - MGP_C3HHeJ_P0069981 Slc26a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069982.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19545460 19586792 - MGP_C3HHeJ_P0069982 Slc26a5 protein_coding protein_coding MGP_C3HHeJ_T0069983.1 MGP_C3HHeJ_G0029021.1 mouse_genomes_project 5 19551951 19556769 - Slc26a5 protein_coding retained_intron MGP_C3HHeJ_T0001468.1 MGP_C3HHeJ_G0001395.1 mouse_genomes_project 5 31332898 31334147 + TEC TEC MGP_C3HHeJ_T0004635.1 MGP_C3HHeJ_G0004006.1 mouse_genomes_project 5 67070190 67080475 + Gm26756 antisense antisense MGP_C3HHeJ_T0004642.1 MGP_C3HHeJ_G0004012.1 mouse_genomes_project 5 73087839 73088711 + 1700071G01Rik antisense antisense MGP_C3HHeJ_T0001529.1 MGP_C3HHeJ_G0001456.1 mouse_genomes_project 5 47826963 47831152 - TEC TEC MGP_C3HHeJ_T0001530.1 MGP_C3HHeJ_G0001456.1 mouse_genomes_project 5 47830272 47830646 - TEC pseudogene MGP_C3HHeJ_T0014696.1 MGP_C3HHeJ_G0012800.1 mouse_genomes_project 5 16402404 16402932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075127.1 MGP_C3HHeJ_G0029981.1 mouse_genomes_project 5 143347746 143358119 + MGP_C3HHeJ_P0075127 C130050O18Rik protein_coding protein_coding MGP_C3HHeJ_T0075128.1 MGP_C3HHeJ_G0029981.1 mouse_genomes_project 5 143348853 143358116 + MGP_C3HHeJ_P0075128 C130050O18Rik protein_coding protein_coding MGP_C3HHeJ_T0075129.1 MGP_C3HHeJ_G0029981.1 mouse_genomes_project 5 143348931 143358121 + MGP_C3HHeJ_P0075129 C130050O18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001704.1 MGP_C3HHeJ_G0001628.1 mouse_genomes_project 5 105256368 105256685 - TEC TEC MGP_C3HHeJ_T0001794.1 MGP_C3HHeJ_G0001717.1 mouse_genomes_project 5 129546581 129547546 + TEC TEC MGP_C3HHeJ_T0072594.1 MGP_C3HHeJ_G0029508.1 mouse_genomes_project 5 105463797 105499570 - MGP_C3HHeJ_P0072594 Sparcl1 protein_coding protein_coding MGP_C3HHeJ_T0072595.1 MGP_C3HHeJ_G0029508.1 mouse_genomes_project 5 105478139 105499276 - MGP_C3HHeJ_P0072595 Sparcl1 protein_coding protein_coding MGP_C3HHeJ_T0069890.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15336865 15405199 - MGP_C3HHeJ_P0069890 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069891.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337191 15391106 - MGP_C3HHeJ_P0069891 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069892.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337542 15450352 - MGP_C3HHeJ_P0069892 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069893.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337544 15405136 - MGP_C3HHeJ_P0069893 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069894.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15337661 15391127 - MGP_C3HHeJ_P0069894 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0069895.1 MGP_C3HHeJ_G0029002.1 mouse_genomes_project 5 15369794 15450406 - MGP_C3HHeJ_P0069895 Cd36 protein_coding protein_coding MGP_C3HHeJ_T0014767.1 MGP_C3HHeJ_G0012871.1 mouse_genomes_project 5 34009649 34011436 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015015.1 MGP_C3HHeJ_G0013119.1 mouse_genomes_project 5 149706542 149706735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100720.1 MGP_C3HHeJ_G0038914.1 mouse_genomes_project 5 101303575 101303658 - Gm26363 snoRNA snoRNA MGP_C3HHeJ_T0071279.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47227882 47278280 + 5730480H06Rik protein_coding processed_transcript MGP_C3HHeJ_T0071280.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47270399 47286904 + MGP_C3HHeJ_P0071280 5730480H06Rik protein_coding protein_coding MGP_C3HHeJ_T0071281.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47270399 47286904 + MGP_C3HHeJ_P0071281 5730480H06Rik protein_coding protein_coding MGP_C3HHeJ_T0071282.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47270503 47286905 + MGP_C3HHeJ_P0071282 5730480H06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071283.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47272508 47293676 + MGP_C3HHeJ_P0071283 5730480H06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071284.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47278193 47286615 + 5730480H06Rik protein_coding retained_intron MGP_C3HHeJ_T0071292.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47290895 47296300 + 5730480H06Rik protein_coding retained_intron MGP_C3HHeJ_T0071293.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47293635 47313359 + 5730480H06Rik protein_coding retained_intron MGP_C3HHeJ_T0071295.1 MGP_C3HHeJ_G0029239.1 mouse_genomes_project 5 47294722 47313388 + 5730480H06Rik protein_coding processed_transcript MGP_C3HHeJ_T0004616.1 MGP_C3HHeJ_G0003990.1 mouse_genomes_project 5 44302201 44307263 + 9630001P10Rik antisense antisense MGP_C3HHeJ_T0004617.1 MGP_C3HHeJ_G0003990.1 mouse_genomes_project 5 44302775 44308964 + 9630001P10Rik antisense antisense MGP_C3HHeJ_T0004618.1 MGP_C3HHeJ_G0003990.1 mouse_genomes_project 5 44302869 44307586 + 9630001P10Rik antisense antisense MGP_C3HHeJ_T0074306.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124538 133170804 + MGP_C3HHeJ_P0074306 Vkorc1l1 protein_coding protein_coding MGP_C3HHeJ_T0074307.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124677 133177313 + MGP_C3HHeJ_P0074307 Vkorc1l1 protein_coding protein_coding MGP_C3HHeJ_T0074308.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124695 133173198 + MGP_C3HHeJ_P0074308 Vkorc1l1 protein_coding protein_coding MGP_C3HHeJ_T0074309.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133124742 133168818 + MGP_C3HHeJ_P0074309 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074310.1 MGP_C3HHeJ_G0029830.1 mouse_genomes_project 5 133163583 133173099 + MGP_C3HHeJ_P0074310 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001537.1 MGP_C3HHeJ_G0001463.1 mouse_genomes_project 5 47976127 47978586 - TEC TEC MGP_C3HHeJ_T0071016.1 MGP_C3HHeJ_G0029196.1 mouse_genomes_project 5 35336010 35423012 + MGP_C3HHeJ_P0071016 Ppp2r2c protein_coding protein_coding MGP_C3HHeJ_T0071017.1 MGP_C3HHeJ_G0029196.1 mouse_genomes_project 5 35336160 35398781 + MGP_C3HHeJ_P0071017 Ppp2r2c protein_coding protein_coding MGP_C3HHeJ_T0071018.1 MGP_C3HHeJ_G0029196.1 mouse_genomes_project 5 35407580 35408338 + Ppp2r2c protein_coding processed_transcript MGP_C3HHeJ_T0073933.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126522066 126536408 - MGP_C3HHeJ_P0073933 Diablo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073935.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126524016 126536407 - MGP_C3HHeJ_P0073935 Diablo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073936.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126524016 126536441 - MGP_C3HHeJ_P0073936 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073937.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126524393 126537694 - MGP_C3HHeJ_P0073937 Diablo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073938.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126528122 126536401 - MGP_C3HHeJ_P0073938 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073939.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126528577 126536398 - MGP_C3HHeJ_P0073939 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073940.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126530043 126536385 - MGP_C3HHeJ_P0073940 Diablo protein_coding protein_coding MGP_C3HHeJ_T0073941.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126530250 126535756 - Diablo protein_coding retained_intron MGP_C3HHeJ_T0073942.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126530351 126533067 - Diablo protein_coding retained_intron MGP_C3HHeJ_T0073943.1 MGP_C3HHeJ_G0029766.1 mouse_genomes_project 5 126536760 126537753 - Diablo protein_coding processed_transcript MGP_C3HHeJ_T0074778.1 MGP_C3HHeJ_G0029911.1 mouse_genomes_project 5 140713415 140725048 - MGP_C3HHeJ_P0074778 Trim56 protein_coding protein_coding MGP_C3HHeJ_T0074779.1 MGP_C3HHeJ_G0029911.1 mouse_genomes_project 5 140722864 140725050 - MGP_C3HHeJ_P0074779 Trim56 protein_coding protein_coding MGP_C3HHeJ_T0071744.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72906800 72993890 - MGP_C3HHeJ_P0071744 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071745.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72907141 72951012 - MGP_C3HHeJ_P0071745 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071746.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72907152 72960515 - Fryl protein_coding processed_transcript MGP_C3HHeJ_T0071747.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72908009 72994292 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071748.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72908020 73079000 - MGP_C3HHeJ_P0071748 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071749.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72924498 73082987 - MGP_C3HHeJ_P0071749 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071750.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72955017 73013054 - MGP_C3HHeJ_P0071750 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071751.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72961032 72964026 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071752.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72961135 73007926 - Fryl protein_coding processed_transcript MGP_C3HHeJ_T0071753.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72967396 72968327 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071754.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72985575 72986455 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071755.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72986645 72994014 - MGP_C3HHeJ_P0071755 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071756.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 72995653 72998768 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071757.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73023461 73024455 - MGP_C3HHeJ_P0071757 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071758.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73025589 73100072 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071759.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73034608 73047933 - MGP_C3HHeJ_P0071759 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071760.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73046429 73050329 - MGP_C3HHeJ_P0071760 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071761.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73047340 73191143 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0071762.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73078901 73124096 - MGP_C3HHeJ_P0071762 Fryl protein_coding protein_coding MGP_C3HHeJ_T0071763.1 MGP_C3HHeJ_G0029322.1 mouse_genomes_project 5 73126044 73191307 - Fryl protein_coding retained_intron MGP_C3HHeJ_T0099431.1 MGP_C3HHeJ_G0037625.1 mouse_genomes_project 5 32564760 32564863 + Gm25918 snRNA snRNA MGP_C3HHeJ_T0072239.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92728841 92744701 - Rchy1 protein_coding processed_transcript MGP_C3HHeJ_T0072240.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92728841 92745213 - MGP_C3HHeJ_P0072240 Rchy1 protein_coding protein_coding MGP_C3HHeJ_T0072241.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92728938 92744880 - MGP_C3HHeJ_P0072241 Rchy1 protein_coding protein_coding MGP_C3HHeJ_T0072242.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92732149 92734951 - Rchy1 protein_coding retained_intron MGP_C3HHeJ_T0072243.1 MGP_C3HHeJ_G0029438.1 mouse_genomes_project 5 92743826 92744871 - Rchy1 protein_coding retained_intron MGP_C3HHeJ_T0008025.1 MGP_C3HHeJ_G0006534.1 mouse_genomes_project 5 36850187 36855036 + 4930487D11Rik lincRNA lincRNA MGP_C3HHeJ_T0098497.1 MGP_C3HHeJ_G0036702.1 mouse_genomes_project 5 100712537 100713276 - Gm16227 sense_intronic sense_intronic MGP_C3HHeJ_T0014743.1 MGP_C3HHeJ_G0012847.1 mouse_genomes_project 5 26097374 26098670 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014905.1 MGP_C3HHeJ_G0013009.1 mouse_genomes_project 5 103492303 103493072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100718.1 MGP_C3HHeJ_G0038912.1 mouse_genomes_project 5 100867977 100868109 + Gm25969 snoRNA snoRNA MGP_C3HHeJ_T0101222.1 MGP_C3HHeJ_G0039355.1 mouse_genomes_project 5 57165873 57166447 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0017935.1 MGP_C3HHeJ_G0015363.1 mouse_genomes_project 5 67114288 67121226 + C330024D21Rik processed_transcript retained_intron MGP_C3HHeJ_T0017936.1 MGP_C3HHeJ_G0015363.1 mouse_genomes_project 5 67114291 67128764 + C330024D21Rik processed_transcript lincRNA MGP_C3HHeJ_T0017937.1 MGP_C3HHeJ_G0015363.1 mouse_genomes_project 5 67114294 67128430 + C330024D21Rik processed_transcript lincRNA MGP_C3HHeJ_T0071135.1 MGP_C3HHeJ_G0029215.1 mouse_genomes_project 5 37220708 37399731 - MGP_C3HHeJ_P0071135 Clnk protein_coding protein_coding MGP_C3HHeJ_T0071136.1 MGP_C3HHeJ_G0029215.1 mouse_genomes_project 5 37220708 37399731 - MGP_C3HHeJ_P0071136 Clnk protein_coding protein_coding MGP_C3HHeJ_T0004731.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122126787 122131591 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004732.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122126790 122187421 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004733.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122126882 122127418 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004734.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122169746 122187498 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004735.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122170383 122187709 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0004736.1 MGP_C3HHeJ_G0004075.1 mouse_genomes_project 5 122177212 122234535 - Tbx3os1 antisense antisense MGP_C3HHeJ_T0074311.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133179631 133194352 - MGP_C3HHeJ_P0074311 Gusb protein_coding protein_coding MGP_C3HHeJ_T0074312.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133179643 133194131 - MGP_C3HHeJ_P0074312 Gusb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074313.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133180201 133181263 - Gusb protein_coding retained_intron MGP_C3HHeJ_T0074314.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133189958 133194168 - MGP_C3HHeJ_P0074314 Gusb protein_coding protein_coding MGP_C3HHeJ_T0074315.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133190898 133194184 - MGP_C3HHeJ_P0074315 Gusb protein_coding protein_coding MGP_C3HHeJ_T0074316.1 MGP_C3HHeJ_G0029831.1 mouse_genomes_project 5 133190921 133194268 - Gusb protein_coding retained_intron MGP_C3HHeJ_T0008152.1 MGP_C3HHeJ_G0006637.1 mouse_genomes_project 5 103023817 103026082 + Gm43270 lincRNA lincRNA MGP_C3HHeJ_T0072217.1 MGP_C3HHeJ_G0029428.1 mouse_genomes_project 5 91531677 91536001 + Cxcl3 protein_coding retained_intron MGP_C3HHeJ_T0072218.1 MGP_C3HHeJ_G0029428.1 mouse_genomes_project 5 91531677 91534494 + MGP_C3HHeJ_P0072218 Cxcl3 protein_coding protein_coding MGP_C3HHeJ_T0015002.1 MGP_C3HHeJ_G0013106.1 mouse_genomes_project 5 144574963 144575367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017986.1 MGP_C3HHeJ_G0015379.1 mouse_genomes_project 5 154143857 154209549 + Gm20488 processed_transcript processed_transcript MGP_C3HHeJ_T0008090.1 MGP_C3HHeJ_G0006588.1 mouse_genomes_project 5 75758457 75766798 + Gm43101 lincRNA lincRNA MGP_C3HHeJ_T0008091.1 MGP_C3HHeJ_G0006588.1 mouse_genomes_project 5 75765661 75766799 + Gm43101 lincRNA lincRNA MGP_C3HHeJ_T0072095.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337072 88352287 + MGP_C3HHeJ_P0072095 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072096.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337072 88352287 + MGP_C3HHeJ_P0072096 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072097.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337072 88352188 + MGP_C3HHeJ_P0072097 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072098.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337086 88352188 + MGP_C3HHeJ_P0072098 Csn1s2a protein_coding protein_coding MGP_C3HHeJ_T0072099.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88337087 88343095 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072100.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88338289 88341315 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072101.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88339972 88342906 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072102.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88342115 88345367 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072103.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88345337 88352266 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0072104.1 MGP_C3HHeJ_G0029390.1 mouse_genomes_project 5 88348649 88350586 + Csn1s2a protein_coding retained_intron MGP_C3HHeJ_T0073112.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929677 115936771 + MGP_C3HHeJ_P0073112 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073113.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929732 115936756 + MGP_C3HHeJ_P0073113 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073114.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929732 115936281 + MGP_C3HHeJ_P0073114 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073115.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929747 115934025 + MGP_C3HHeJ_P0073115 Iscu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073116.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929934 115936497 + MGP_C3HHeJ_P0073116 Iscu protein_coding protein_coding MGP_C3HHeJ_T0073117.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115929954 115936428 + MGP_C3HHeJ_P0073117 Iscu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073118.1 MGP_C3HHeJ_G0029619.1 mouse_genomes_project 5 115930783 115936324 + MGP_C3HHeJ_P0073118 Iscu protein_coding protein_coding MGP_C3HHeJ_T0014921.1 MGP_C3HHeJ_G0013025.1 mouse_genomes_project 5 108577432 108577675 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073460.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119793928 119803330 + Wsb2 protein_coding retained_intron MGP_C3HHeJ_T0073461.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119794019 119816391 + MGP_C3HHeJ_P0073461 Wsb2 protein_coding protein_coding MGP_C3HHeJ_T0073462.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119797577 119807465 + Wsb2 protein_coding processed_transcript MGP_C3HHeJ_T0073463.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119812193 119815164 + Wsb2 protein_coding retained_intron MGP_C3HHeJ_T0073464.1 MGP_C3HHeJ_G0029682.1 mouse_genomes_project 5 119812991 119815199 + Wsb2 protein_coding retained_intron MGP_C3HHeJ_T0010643.1 MGP_C3HHeJ_G0008776.1 mouse_genomes_project 5 141161263 141161378 - Mir6418 miRNA miRNA MGP_C3HHeJ_T0075018.1 MGP_C3HHeJ_G0029961.1 mouse_genomes_project 5 142089688 142104688 - MGP_C3HHeJ_P0075018 Gm43720 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075004.1 MGP_C3HHeJ_G0029957.1 mouse_genomes_project 5 142034584 142077933 + MGP_C3HHeJ_P0075004 protein_coding protein_coding MGP_C3HHeJ_T0071727.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612899 72735060 - MGP_C3HHeJ_P0071727 Tec protein_coding protein_coding MGP_C3HHeJ_T0071728.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612906 72735075 - MGP_C3HHeJ_P0071728 Tec protein_coding protein_coding MGP_C3HHeJ_T0071729.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612917 72735012 - MGP_C3HHeJ_P0071729 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071730.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612921 72735062 - MGP_C3HHeJ_P0071730 Tec protein_coding protein_coding MGP_C3HHeJ_T0071731.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612921 72735099 - MGP_C3HHeJ_P0071731 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071732.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72612921 72648019 - MGP_C3HHeJ_P0071732 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071733.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72634807 72735065 - MGP_C3HHeJ_P0071733 Tec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071734.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72686033 72735059 - Tec protein_coding retained_intron MGP_C3HHeJ_T0071735.1 MGP_C3HHeJ_G0029318.1 mouse_genomes_project 5 72686337 72707940 - MGP_C3HHeJ_P0071735 Tec protein_coding protein_coding MGP_C3HHeJ_T0014797.1 MGP_C3HHeJ_G0012901.1 mouse_genomes_project 5 53800789 53800943 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014997.1 MGP_C3HHeJ_G0013101.1 mouse_genomes_project 5 142518575 142519126 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001417.1 MGP_C3HHeJ_G0001347.1 mouse_genomes_project 5 10960652 10964681 + TEC TEC MGP_C3HHeJ_T0014926.1 MGP_C3HHeJ_G0013030.1 mouse_genomes_project 5 109724066 109724293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008103.1 MGP_C3HHeJ_G0006599.1 mouse_genomes_project 5 77577836 77590635 + Gm42761 lincRNA lincRNA MGP_C3HHeJ_T0069897.1 MGP_C3HHeJ_G0029004.1 mouse_genomes_project 5 15842346 15936449 - MGP_C3HHeJ_P0069897 Gnai1 protein_coding protein_coding MGP_C3HHeJ_T0008093.1 MGP_C3HHeJ_G0006590.1 mouse_genomes_project 5 75864631 75867234 - Gm19590 lincRNA lincRNA MGP_C3HHeJ_T0004578.1 MGP_C3HHeJ_G0003961.1 mouse_genomes_project 5 26549816 27019300 + antisense antisense MGP_C3HHeJ_T0004579.1 MGP_C3HHeJ_G0003961.1 mouse_genomes_project 5 26558505 26795350 + antisense antisense MGP_C3HHeJ_T0014866.1 MGP_C3HHeJ_G0012970.1 mouse_genomes_project 5 87541684 87542744 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010603.1 MGP_C3HHeJ_G0008736.1 mouse_genomes_project 5 75183989 75184063 + Mir7025 miRNA miRNA MGP_C3HHeJ_T0075627.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153614787 153675341 - MGP_C3HHeJ_P0075627 Katnal1 protein_coding protein_coding MGP_C3HHeJ_T0075628.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153618882 153622277 - Katnal1 protein_coding retained_intron MGP_C3HHeJ_T0075629.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153619337 153675328 - MGP_C3HHeJ_P0075629 Katnal1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075630.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153628772 153675694 - Katnal1 protein_coding processed_transcript MGP_C3HHeJ_T0075631.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153636746 153676013 - MGP_C3HHeJ_P0075631 Katnal1 protein_coding protein_coding MGP_C3HHeJ_T0075633.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153648990 153675322 - MGP_C3HHeJ_P0075633 Katnal1 protein_coding protein_coding MGP_C3HHeJ_T0075634.1 MGP_C3HHeJ_G0030093.1 mouse_genomes_project 5 153671314 153675359 - Katnal1 protein_coding processed_transcript MGP_C3HHeJ_T0070215.1 MGP_C3HHeJ_G0029065.1 mouse_genomes_project 5 25939388 25952120 + MGP_C3HHeJ_P0070215 Htr5a protein_coding protein_coding MGP_C3HHeJ_T0071641.1 MGP_C3HHeJ_G0029298.1 mouse_genomes_project 5 67585003 67605301 - MGP_C3HHeJ_P0071641 Gm21905 protein_coding protein_coding MGP_C3HHeJ_T0001411.1 MGP_C3HHeJ_G0001341.1 mouse_genomes_project 5 9395842 9405894 - TEC TEC MGP_C3HHeJ_T0075469.1 MGP_C3HHeJ_G0030056.1 mouse_genomes_project 5 149406856 149428157 - MGP_C3HHeJ_P0075469 Ptcd1 protein_coding protein_coding MGP_C3HHeJ_T0075470.1 MGP_C3HHeJ_G0030056.1 mouse_genomes_project 5 149426500 149428005 - MGP_C3HHeJ_P0075470 Ptcd1 protein_coding protein_coding MGP_C3HHeJ_T0004704.1 MGP_C3HHeJ_G0004056.1 mouse_genomes_project 5 114428476 114431745 - Gm20636 antisense antisense MGP_C3HHeJ_T0071059.1 MGP_C3HHeJ_G0029202.1 mouse_genomes_project 5 35933337 36211238 - MGP_C3HHeJ_P0071059 Stk32b protein_coding protein_coding MGP_C3HHeJ_T0001796.1 MGP_C3HHeJ_G0001719.1 mouse_genomes_project 5 130415141 130416223 + TEC TEC MGP_C3HHeJ_T0017990.1 MGP_C3HHeJ_G0015381.1 mouse_genomes_project 5 154719936 154727604 + Gm43451 processed_transcript lincRNA MGP_C3HHeJ_T0017991.1 MGP_C3HHeJ_G0015381.1 mouse_genomes_project 5 154726979 154727849 + Gm43451 processed_transcript retained_intron MGP_C3HHeJ_T0001486.1 MGP_C3HHeJ_G0001413.1 mouse_genomes_project 5 41731466 41735963 - TEC TEC MGP_C3HHeJ_T0008240.1 MGP_C3HHeJ_G0006691.1 mouse_genomes_project 5 118695631 118701442 + B230112J18Rik lincRNA lincRNA MGP_C3HHeJ_T0072628.1 MGP_C3HHeJ_G0029521.1 mouse_genomes_project 5 106863986 106951026 - MGP_C3HHeJ_P0072628 protein_coding protein_coding MGP_C3HHeJ_T0001534.1 MGP_C3HHeJ_G0001460.1 mouse_genomes_project 5 47912199 47914743 - TEC TEC MGP_C3HHeJ_T0001851.1 MGP_C3HHeJ_G0001773.1 mouse_genomes_project 5 142527130 142528600 + TEC TEC MGP_C3HHeJ_T0070761.1 MGP_C3HHeJ_G0029154.1 mouse_genomes_project 5 32292729 32321980 - MGP_C3HHeJ_P0070761 Nelfa protein_coding protein_coding MGP_C3HHeJ_T0070762.1 MGP_C3HHeJ_G0029154.1 mouse_genomes_project 5 32304983 32321817 - Nelfa protein_coding retained_intron MGP_C3HHeJ_T0074118.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127627311 127636164 - MGP_C3HHeJ_P0074118 Eif2b1 protein_coding protein_coding MGP_C3HHeJ_T0074119.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127628849 127632015 - Eif2b1 protein_coding retained_intron MGP_C3HHeJ_T0074120.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127630179 127636094 - MGP_C3HHeJ_P0074120 Eif2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074121.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127630829 127636108 - MGP_C3HHeJ_P0074121 Eif2b1 protein_coding protein_coding MGP_C3HHeJ_T0074122.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127633898 127636025 - MGP_C3HHeJ_P0074122 Eif2b1 protein_coding protein_coding MGP_C3HHeJ_T0074123.1 MGP_C3HHeJ_G0029794.1 mouse_genomes_project 5 127635551 127636065 - MGP_C3HHeJ_P0074123 Eif2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072995.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 112875492 113279519 + MGP_C3HHeJ_P0072995 Ttc28 protein_coding protein_coding MGP_C3HHeJ_T0072996.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 112875492 113279518 + MGP_C3HHeJ_P0072996 Ttc28 protein_coding protein_coding MGP_C3HHeJ_T0072997.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 112875511 112911718 + Ttc28 protein_coding processed_transcript MGP_C3HHeJ_T0072998.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 113215658 113219619 + Ttc28 protein_coding retained_intron MGP_C3HHeJ_T0072999.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 113223440 113228780 + Ttc28 protein_coding processed_transcript MGP_C3HHeJ_T0073000.1 MGP_C3HHeJ_G0029593.1 mouse_genomes_project 5 113225641 113256317 + Ttc28 protein_coding retained_intron MGP_C3HHeJ_T0073373.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904083 117963447 + MGP_C3HHeJ_P0073373 Gcn1l1 protein_coding protein_coding MGP_C3HHeJ_T0073374.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904087 117962625 + MGP_C3HHeJ_P0073374 Gcn1l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073375.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904101 117923070 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073376.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904103 117920112 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073377.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904105 117923579 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073378.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117904132 117906050 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073379.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117921228 117926250 + Gcn1l1 protein_coding processed_transcript MGP_C3HHeJ_T0073380.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117944871 117963441 + Gcn1l1 protein_coding processed_transcript MGP_C3HHeJ_T0073381.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117949013 117949790 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0073382.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117951005 117952564 + Gcn1l1 protein_coding processed_transcript MGP_C3HHeJ_T0073383.1 MGP_C3HHeJ_G0029669.1 mouse_genomes_project 5 117954046 117955194 + Gcn1l1 protein_coding retained_intron MGP_C3HHeJ_T0075068.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142936408 143053602 - MGP_C3HHeJ_P0075068 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075069.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142937765 142942912 - Prkar1b protein_coding processed_transcript MGP_C3HHeJ_T0075070.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142962486 143051736 - MGP_C3HHeJ_P0075070 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075071.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142970697 143054074 - MGP_C3HHeJ_P0075071 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075072.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 142983183 143036834 - MGP_C3HHeJ_P0075072 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075073.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143032673 143054491 - MGP_C3HHeJ_P0075073 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075074.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143032700 143073763 - MGP_C3HHeJ_P0075074 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075075.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143032766 143054298 - MGP_C3HHeJ_P0075075 Prkar1b protein_coding protein_coding MGP_C3HHeJ_T0075076.1 MGP_C3HHeJ_G0029972.1 mouse_genomes_project 5 143071815 143073719 - Prkar1b protein_coding processed_transcript MGP_C3HHeJ_T0072805.1 MGP_C3HHeJ_G0029556.1 mouse_genomes_project 5 110306064 110340850 - MGP_C3HHeJ_P0072805 Cplx1 protein_coding protein_coding MGP_C3HHeJ_T0072806.1 MGP_C3HHeJ_G0029556.1 mouse_genomes_project 5 110307768 110340826 - MGP_C3HHeJ_P0072806 Cplx1 protein_coding protein_coding MGP_C3HHeJ_T0075561.1 MGP_C3HHeJ_G0030082.1 mouse_genomes_project 5 151904261 151910129 + MGP_C3HHeJ_P0075561 Pdx1 protein_coding protein_coding MGP_C3HHeJ_T0072026.1 MGP_C3HHeJ_G0029367.1 mouse_genomes_project 5 86758617 86822863 - MGP_C3HHeJ_P0072026 Tmprss11c protein_coding protein_coding MGP_C3HHeJ_T0072027.1 MGP_C3HHeJ_G0029367.1 mouse_genomes_project 5 86758888 86822815 - MGP_C3HHeJ_P0072027 Tmprss11c protein_coding protein_coding MGP_C3HHeJ_T0070717.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039135 32061738 + MGP_C3HHeJ_P0070717 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070718.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039135 32054944 + MGP_C3HHeJ_P0070718 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070719.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039561 32046923 + MGP_C3HHeJ_P0070719 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070720.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039593 32054941 + MGP_C3HHeJ_P0070720 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070721.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32039641 32043766 + Tacc3 protein_coding retained_intron MGP_C3HHeJ_T0070722.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32051297 32054944 + MGP_C3HHeJ_P0070722 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0070723.1 MGP_C3HHeJ_G0029150.1 mouse_genomes_project 5 32051360 32061728 + MGP_C3HHeJ_P0070723 Tacc3 protein_coding protein_coding MGP_C3HHeJ_T0069662.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 842968 869424 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069663.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 843092 875639 + MGP_C3HHeJ_P0069663 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069664.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 843188 863567 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069665.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 843188 1006374 + MGP_C3HHeJ_P0069665 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069666.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 865897 872314 + Akap9 protein_coding processed_transcript MGP_C3HHeJ_T0069667.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 865908 866489 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069668.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 869373 872370 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069669.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 889231 898562 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069670.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 892873 893789 + MGP_C3HHeJ_P0069670 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069671.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 959650 961812 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069672.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 983815 985491 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069673.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 988936 989939 + MGP_C3HHeJ_P0069673 Akap9 protein_coding protein_coding MGP_C3HHeJ_T0069674.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 989058 989537 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0069675.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 989858 995518 + MGP_C3HHeJ_P0069675 Akap9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069676.1 MGP_C3HHeJ_G0028968.1 mouse_genomes_project 5 992047 992517 + Akap9 protein_coding retained_intron MGP_C3HHeJ_T0075020.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098384 142104735 - MGP_C3HHeJ_P0075020 Gpc2 protein_coding protein_coding MGP_C3HHeJ_T0075021.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098386 142104715 - Gpc2 protein_coding retained_intron MGP_C3HHeJ_T0075022.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098386 142104692 - Gpc2 protein_coding retained_intron MGP_C3HHeJ_T0075023.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098386 142104712 - MGP_C3HHeJ_P0075023 Gpc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075024.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142098389 142104695 - MGP_C3HHeJ_P0075024 Gpc2 protein_coding protein_coding MGP_C3HHeJ_T0075025.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142100257 142102967 - Gpc2 protein_coding retained_intron MGP_C3HHeJ_T0075026.1 MGP_C3HHeJ_G0029962.1 mouse_genomes_project 5 142101370 142104693 - Gpc2 protein_coding processed_transcript MGP_C3HHeJ_T0073641.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313154 124341792 - MGP_C3HHeJ_P0073641 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073642.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313164 124341087 - MGP_C3HHeJ_P0073642 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073643.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313168 124315374 - Mapkapk5 protein_coding retained_intron MGP_C3HHeJ_T0073644.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313168 124313955 - Mapkapk5 protein_coding retained_intron MGP_C3HHeJ_T0073645.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313168 124315307 - MGP_C3HHeJ_P0073645 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073646.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313172 124333614 - Mapkapk5 protein_coding processed_transcript MGP_C3HHeJ_T0073647.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313261 124341087 - MGP_C3HHeJ_P0073647 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073648.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313261 124341087 - MGP_C3HHeJ_P0073648 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073649.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124313880 124341087 - Mapkapk5 protein_coding processed_transcript MGP_C3HHeJ_T0073650.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124314676 124327533 - Mapkapk5 protein_coding retained_intron MGP_C3HHeJ_T0073651.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124329074 124331744 - MGP_C3HHeJ_P0073651 Mapkapk5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073652.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124329269 124341118 - MGP_C3HHeJ_P0073652 Mapkapk5 protein_coding protein_coding MGP_C3HHeJ_T0073653.1 MGP_C3HHeJ_G0029725.1 mouse_genomes_project 5 124330358 124333077 - Mapkapk5 protein_coding processed_transcript MGP_C3HHeJ_T0001804.1 MGP_C3HHeJ_G0001727.1 mouse_genomes_project 5 132760026 132762254 + TEC TEC MGP_C3HHeJ_T0015011.1 MGP_C3HHeJ_G0013115.1 mouse_genomes_project 5 148632972 148633185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001418.1 MGP_C3HHeJ_G0001348.1 mouse_genomes_project 5 11015044 11017243 + TEC TEC MGP_C3HHeJ_T0008260.1 MGP_C3HHeJ_G0006708.1 mouse_genomes_project 5 122407790 122411260 - Gm43050 lincRNA lincRNA MGP_C3HHeJ_T0008261.1 MGP_C3HHeJ_G0006708.1 mouse_genomes_project 5 122410369 122411131 - Gm43050 lincRNA lincRNA MGP_C3HHeJ_T0001435.1 MGP_C3HHeJ_G0001365.1 mouse_genomes_project 5 18821816 18822763 + TEC TEC MGP_C3HHeJ_T0004601.1 MGP_C3HHeJ_G0003981.1 mouse_genomes_project 5 37251547 37264987 + Clnkos antisense antisense MGP_C3HHeJ_T0004602.1 MGP_C3HHeJ_G0003981.1 mouse_genomes_project 5 37251548 37264987 + Clnkos antisense antisense MGP_C3HHeJ_T0015019.1 MGP_C3HHeJ_G0013123.1 mouse_genomes_project 5 150421757 150422568 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001592.1 MGP_C3HHeJ_G0001517.1 mouse_genomes_project 5 64321204 64322926 + TEC TEC MGP_C3HHeJ_T0100721.1 MGP_C3HHeJ_G0038915.1 mouse_genomes_project 5 102116170 102116304 + Gm26286 snoRNA snoRNA MGP_C3HHeJ_T0001453.1 MGP_C3HHeJ_G0001382.1 mouse_genomes_project 5 29063137 29066480 + TEC TEC MGP_C3HHeJ_T0015026.1 MGP_C3HHeJ_G0013130.1 mouse_genomes_project 5 152049818 152053764 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001863.1 MGP_C3HHeJ_G0001785.1 mouse_genomes_project 5 148015026 148021395 + TEC TEC MGP_C3HHeJ_T0011508.1 MGP_C3HHeJ_G0009641.1 mouse_genomes_project 5 111468248 111468333 + Gm28000 misc_RNA misc_RNA MGP_C3HHeJ_T0004709.1 MGP_C3HHeJ_G0004058.1 mouse_genomes_project 5 115775320 115776040 + Gm15736 antisense antisense MGP_C3HHeJ_T0008200.1 MGP_C3HHeJ_G0006667.1 mouse_genomes_project 5 113589878 113590547 + Gm42489 lincRNA lincRNA MGP_C3HHeJ_T0100727.1 MGP_C3HHeJ_G0038921.1 mouse_genomes_project 5 120758931 120759063 + Gm25076 snoRNA snoRNA MGP_C3HHeJ_T0008112.1 MGP_C3HHeJ_G0006605.1 mouse_genomes_project 5 88478104 88483479 + BC037156 lincRNA lincRNA MGP_C3HHeJ_T0008349.1 MGP_C3HHeJ_G0006766.1 mouse_genomes_project 5 148001676 148010783 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0008350.1 MGP_C3HHeJ_G0006766.1 mouse_genomes_project 5 148003183 148012123 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0008352.1 MGP_C3HHeJ_G0006766.1 mouse_genomes_project 5 148011283 148013563 + D130017N08Rik lincRNA lincRNA MGP_C3HHeJ_T0008132.1 MGP_C3HHeJ_G0006624.1 mouse_genomes_project 5 99746464 99761063 - 1700010H22Rik lincRNA lincRNA MGP_C3HHeJ_T0008133.1 MGP_C3HHeJ_G0006624.1 mouse_genomes_project 5 99756904 99761141 - 1700010H22Rik lincRNA lincRNA MGP_C3HHeJ_T0008134.1 MGP_C3HHeJ_G0006624.1 mouse_genomes_project 5 99758325 99760899 - 1700010H22Rik lincRNA lincRNA MGP_C3HHeJ_T0004743.1 MGP_C3HHeJ_G0004081.1 mouse_genomes_project 5 124161334 124162955 + Gm42918 antisense antisense MGP_C3HHeJ_T0001664.1 MGP_C3HHeJ_G0001588.1 mouse_genomes_project 5 75013798 75016645 - TEC TEC MGP_C3HHeJ_T0099448.1 MGP_C3HHeJ_G0037642.1 mouse_genomes_project 5 72843926 72844012 - Gm24776 snRNA snRNA MGP_C3HHeJ_T0008100.1 MGP_C3HHeJ_G0006596.1 mouse_genomes_project 5 77205924 77207706 - Gm42757 lincRNA lincRNA MGP_C3HHeJ_T0014863.1 MGP_C3HHeJ_G0012967.1 mouse_genomes_project 5 85105222 85106339 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007985.1 MGP_C3HHeJ_G0006512.1 mouse_genomes_project 5 23676084 23677534 + Gm43972 lincRNA lincRNA MGP_C3HHeJ_T0008232.1 MGP_C3HHeJ_G0006685.1 mouse_genomes_project 5 117667940 117669364 - 4930401G09Rik lincRNA lincRNA MGP_C3HHeJ_T0070366.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054531 29057045 + MGP_C3HHeJ_P0070366 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070367.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054689 29062525 + MGP_C3HHeJ_P0070367 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070368.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054772 29078455 + MGP_C3HHeJ_P0070368 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070369.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054778 29059671 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070370.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054793 29078157 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070371.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054806 29061922 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070372.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054806 29078156 + MGP_C3HHeJ_P0070372 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070373.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054811 29074977 + MGP_C3HHeJ_P0070373 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070374.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054838 29078156 + MGP_C3HHeJ_P0070374 Agbl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070375.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054843 29078156 + MGP_C3HHeJ_P0070375 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070376.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29054843 29074977 + MGP_C3HHeJ_P0070376 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070377.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29055163 29057707 + MGP_C3HHeJ_P0070377 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0070378.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29056119 29058285 + Agbl5 protein_coding processed_transcript MGP_C3HHeJ_T0070379.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29060041 29061932 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070381.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29060976 29061953 + Agbl5 protein_coding retained_intron MGP_C3HHeJ_T0070382.1 MGP_C3HHeJ_G0029096.1 mouse_genomes_project 5 29061770 29077400 + MGP_C3HHeJ_P0070382 Agbl5 protein_coding protein_coding MGP_C3HHeJ_T0010610.1 MGP_C3HHeJ_G0008743.1 mouse_genomes_project 5 93277339 93277439 + Mir6415 miRNA miRNA MGP_C3HHeJ_T0001672.1 MGP_C3HHeJ_G0001596.1 mouse_genomes_project 5 82235004 82236012 + TEC TEC MGP_C3HHeJ_T0001858.1 MGP_C3HHeJ_G0001780.1 mouse_genomes_project 5 145414945 145417315 - TEC TEC MGP_C3HHeJ_T0014680.1 MGP_C3HHeJ_G0012784.1 mouse_genomes_project 5 7304828 7306293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098490.1 MGP_C3HHeJ_G0036695.1 mouse_genomes_project 5 28978548 28981406 + Gm19409 sense_intronic sense_intronic MGP_C3HHeJ_T0098491.1 MGP_C3HHeJ_G0036696.1 mouse_genomes_project 5 32615807 32618508 - Gm15513 sense_intronic sense_intronic MGP_C3HHeJ_T0075492.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496719 149513669 + MGP_C3HHeJ_P0075492 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075493.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496751 149513668 + MGP_C3HHeJ_P0075493 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075494.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496752 149503660 + MGP_C3HHeJ_P0075494 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075495.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149496753 149503530 + MGP_C3HHeJ_P0075495 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0075496.1 MGP_C3HHeJ_G0030061.1 mouse_genomes_project 5 149498462 149503494 + MGP_C3HHeJ_P0075496 Zfp655 protein_coding protein_coding MGP_C3HHeJ_T0014838.1 MGP_C3HHeJ_G0012942.1 mouse_genomes_project 5 72213972 72214486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073326.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117602933 117607243 - MGP_C3HHeJ_P0073326 Dynll1 protein_coding protein_coding MGP_C3HHeJ_T0073327.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117604245 117606907 - Dynll1 protein_coding retained_intron MGP_C3HHeJ_T0073328.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117604254 117605259 - Dynll1 protein_coding processed_transcript MGP_C3HHeJ_T0073329.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117604328 117607156 - MGP_C3HHeJ_P0073329 Dynll1 protein_coding protein_coding MGP_C3HHeJ_T0073330.1 MGP_C3HHeJ_G0029659.1 mouse_genomes_project 5 117605379 117607123 - Dynll1 protein_coding processed_transcript MGP_C3HHeJ_T0008264.1 MGP_C3HHeJ_G0006711.1 mouse_genomes_project 5 122938397 122944850 - Gm42654 lincRNA lincRNA MGP_C3HHeJ_T0008265.1 MGP_C3HHeJ_G0006711.1 mouse_genomes_project 5 122938405 122941441 - Gm42654 lincRNA lincRNA MGP_C3HHeJ_T0011502.1 MGP_C3HHeJ_G0009635.1 mouse_genomes_project 5 92769266 92769542 + Gm24113 misc_RNA misc_RNA MGP_C3HHeJ_T0001787.1 MGP_C3HHeJ_G0001711.1 mouse_genomes_project 5 127311875 127313481 - TEC TEC MGP_C3HHeJ_T0099416.1 MGP_C3HHeJ_G0037610.1 mouse_genomes_project 5 4279217 4279368 - Gm24525 snRNA snRNA MGP_C3HHeJ_T0001760.1 MGP_C3HHeJ_G0001684.1 mouse_genomes_project 5 122848728 122849862 + TEC TEC MGP_C3HHeJ_T0072121.1 MGP_C3HHeJ_G0029396.1 mouse_genomes_project 5 88536361 88576729 + MGP_C3HHeJ_P0072121 Gm28434 protein_coding protein_coding MGP_C3HHeJ_T0098141.1 MGP_C3HHeJ_G0036353.1 mouse_genomes_project 5 35566462 35566565 - Gm25551 rRNA rRNA MGP_C3HHeJ_T0001814.1 MGP_C3HHeJ_G0001737.1 mouse_genomes_project 5 134881584 134883335 - TEC TEC MGP_C3HHeJ_T0070705.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32013415 32033353 - MGP_C3HHeJ_P0070705 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070706.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32018859 32022058 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070707.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32020397 32033582 - MGP_C3HHeJ_P0070707 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070708.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32020397 32033314 - MGP_C3HHeJ_P0070708 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070709.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32021836 32033346 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070710.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32023105 32033308 - MGP_C3HHeJ_P0070710 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070711.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32025738 32033304 - MGP_C3HHeJ_P0070711 Slbp protein_coding protein_coding MGP_C3HHeJ_T0070712.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32027425 32033361 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070713.1 MGP_C3HHeJ_G0029148.1 mouse_genomes_project 5 32032632 32033309 - Slbp protein_coding retained_intron MGP_C3HHeJ_T0070274.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28221618 28235000 - MGP_C3HHeJ_P0070274 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070275.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28221686 28235067 - protein_coding retained_intron MGP_C3HHeJ_T0070276.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28221753 28235022 - MGP_C3HHeJ_P0070276 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070277.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28222602 28235034 - MGP_C3HHeJ_P0070277 protein_coding protein_coding MGP_C3HHeJ_T0070278.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28224695 28235005 - MGP_C3HHeJ_P0070278 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070279.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28225305 28235039 - protein_coding retained_intron MGP_C3HHeJ_T0070280.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28225562 28235029 - MGP_C3HHeJ_P0070280 protein_coding protein_coding MGP_C3HHeJ_T0070281.1 MGP_C3HHeJ_G0029079.1 mouse_genomes_project 5 28229350 28234975 - protein_coding processed_transcript MGP_C3HHeJ_T0017968.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133004660 133016372 + processed_transcript processed_transcript MGP_C3HHeJ_T0017969.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133005101 133015821 + processed_transcript processed_transcript MGP_C3HHeJ_T0017970.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133007343 133010016 + processed_transcript retained_intron MGP_C3HHeJ_T0017971.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133011130 133012450 + processed_transcript retained_intron MGP_C3HHeJ_T0017972.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133012524 133015866 + processed_transcript processed_transcript MGP_C3HHeJ_T0017973.1 MGP_C3HHeJ_G0015375.1 mouse_genomes_project 5 133014970 133015983 + processed_transcript processed_transcript MGP_C3HHeJ_T0069620.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460129 501168 + MGP_C3HHeJ_P0069620 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069621.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460129 501166 + MGP_C3HHeJ_P0069621 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069622.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460262 470812 + MGP_C3HHeJ_P0069622 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069623.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 460434 486922 + MGP_C3HHeJ_P0069623 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069624.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 469771 471071 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069625.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 471151 483601 + MGP_C3HHeJ_P0069625 Pex1 protein_coding protein_coding MGP_C3HHeJ_T0069626.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 474568 481016 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069627.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 481787 487395 + MGP_C3HHeJ_P0069627 Pex1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069628.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 482660 483647 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069629.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 486956 487359 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069630.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 490094 490732 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069632.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 499106 499847 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069633.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 499550 500897 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0069634.1 MGP_C3HHeJ_G0028961.1 mouse_genomes_project 5 500086 500754 + Pex1 protein_coding retained_intron MGP_C3HHeJ_T0014686.1 MGP_C3HHeJ_G0012790.1 mouse_genomes_project 5 11280861 11282163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100736.1 MGP_C3HHeJ_G0038930.1 mouse_genomes_project 5 155581652 155581771 - Gm26013 snoRNA snoRNA MGP_C3HHeJ_T0073596.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123883196 123956573 - MGP_C3HHeJ_P0073596 Ptpn11 protein_coding protein_coding MGP_C3HHeJ_T0073597.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123883198 123956543 - Ptpn11 protein_coding retained_intron MGP_C3HHeJ_T0073598.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123883204 123956505 - MGP_C3HHeJ_P0073598 Ptpn11 protein_coding protein_coding MGP_C3HHeJ_T0073599.1 MGP_C3HHeJ_G0029716.1 mouse_genomes_project 5 123886503 123897829 - Ptpn11 protein_coding processed_transcript MGP_C3HHeJ_T0004794.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088779 142091398 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004795.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088790 142091069 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004796.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088805 142091398 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004797.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142088844 142090966 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0004798.1 MGP_C3HHeJ_G0004120.1 mouse_genomes_project 5 142090280 142090820 + 6330418K02Rik antisense antisense MGP_C3HHeJ_T0069859.1 MGP_C3HHeJ_G0028996.1 mouse_genomes_project 5 11243224 11255313 + MGP_C3HHeJ_P0069859 protein_coding protein_coding MGP_C3HHeJ_T0008334.1 MGP_C3HHeJ_G0006752.1 mouse_genomes_project 5 141132812 141133768 + 9130604C24Rik lincRNA lincRNA MGP_C3HHeJ_T0069648.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673787 714316 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069649.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673787 714391 + MGP_C3HHeJ_P0069649 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069650.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673788 682320 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069651.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673792 714391 + MGP_C3HHeJ_P0069651 Krit1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069652.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 673793 718596 + MGP_C3HHeJ_P0069652 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069653.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 674008 717335 + MGP_C3HHeJ_P0069653 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069654.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 674843 680313 + MGP_C3HHeJ_P0069654 Krit1 protein_coding protein_coding MGP_C3HHeJ_T0069655.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 675896 682113 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069656.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 683381 689173 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069657.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 686294 690549 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0069658.1 MGP_C3HHeJ_G0028965.1 mouse_genomes_project 5 693754 695668 + Krit1 protein_coding retained_intron MGP_C3HHeJ_T0073494.1 MGP_C3HHeJ_G0029689.1 mouse_genomes_project 5 120649473 120672905 + Hrk protein_coding processed_transcript MGP_C3HHeJ_T0073495.1 MGP_C3HHeJ_G0029689.1 mouse_genomes_project 5 120655633 120677550 + MGP_C3HHeJ_P0073495 Hrk protein_coding protein_coding MGP_C3HHeJ_T0075225.1 MGP_C3HHeJ_G0030005.1 mouse_genomes_project 5 144930962 145067657 - MGP_C3HHeJ_P0075225 Card11 protein_coding protein_coding MGP_C3HHeJ_T0075226.1 MGP_C3HHeJ_G0030005.1 mouse_genomes_project 5 144930964 144940190 - Card11 protein_coding retained_intron MGP_C3HHeJ_T0075227.1 MGP_C3HHeJ_G0030005.1 mouse_genomes_project 5 144973103 145067546 - Card11 protein_coding retained_intron MGP_C3HHeJ_T0073052.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114755750 114967641 - MGP_C3HHeJ_P0073052 Myo18b protein_coding protein_coding MGP_C3HHeJ_T0073053.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114755752 114834508 - Myo18b protein_coding processed_transcript MGP_C3HHeJ_T0073054.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114842264 114943301 - Myo18b protein_coding processed_transcript MGP_C3HHeJ_T0073055.1 MGP_C3HHeJ_G0029607.1 mouse_genomes_project 5 114887752 114944204 - MGP_C3HHeJ_P0073055 Myo18b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001853.1 MGP_C3HHeJ_G0001775.1 mouse_genomes_project 5 144017198 144019744 - TEC TEC MGP_C3HHeJ_T0072154.1 MGP_C3HHeJ_G0029412.1 mouse_genomes_project 5 89421723 89439812 + MGP_C3HHeJ_P0072154 Dck protein_coding protein_coding MGP_C3HHeJ_T0072155.1 MGP_C3HHeJ_G0029412.1 mouse_genomes_project 5 89426083 89426902 + Dck protein_coding retained_intron MGP_C3HHeJ_T0001866.1 MGP_C3HHeJ_G0001788.1 mouse_genomes_project 5 152074133 152075193 + TEC TEC MGP_C3HHeJ_T0071942.1 MGP_C3HHeJ_G0029352.1 mouse_genomes_project 5 77064125 77069527 + MGP_C3HHeJ_P0071942 Arl9 protein_coding protein_coding MGP_C3HHeJ_T0071943.1 MGP_C3HHeJ_G0029352.1 mouse_genomes_project 5 77066539 77070656 + MGP_C3HHeJ_P0071943 Arl9 protein_coding protein_coding MGP_C3HHeJ_T0001850.1 MGP_C3HHeJ_G0001772.1 mouse_genomes_project 5 140950800 140951737 + TEC TEC MGP_C3HHeJ_T0070441.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29299123 29304798 + MGP_C3HHeJ_P0070441 Dnajc5g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070442.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29301120 29304553 + MGP_C3HHeJ_P0070442 Dnajc5g protein_coding protein_coding MGP_C3HHeJ_T0070443.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29301130 29304657 + MGP_C3HHeJ_P0070443 Dnajc5g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070444.1 MGP_C3HHeJ_G0029107.1 mouse_genomes_project 5 29301132 29305340 + MGP_C3HHeJ_P0070444 Dnajc5g protein_coding protein_coding MGP_C3HHeJ_T0074399.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551371 137561659 - MGP_C3HHeJ_P0074399 Ncf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074400.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551578 137561659 - MGP_C3HHeJ_P0074400 Ncf1 protein_coding protein_coding MGP_C3HHeJ_T0074401.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551578 137561659 - MGP_C3HHeJ_P0074401 Ncf1 protein_coding protein_coding MGP_C3HHeJ_T0074402.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137551578 137561659 - MGP_C3HHeJ_P0074402 Ncf1 protein_coding protein_coding MGP_C3HHeJ_T0074403.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137552690 137553541 - Ncf1 protein_coding retained_intron MGP_C3HHeJ_T0074404.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137554764 137560575 - Ncf1 protein_coding retained_intron MGP_C3HHeJ_T0074405.1 MGP_C3HHeJ_G0029848.1 mouse_genomes_project 5 137557036 137559994 - Ncf1 protein_coding retained_intron MGP_C3HHeJ_T0072563.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005124 105014575 - MGP_C3HHeJ_P0072563 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072564.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005511 105014297 - MGP_C3HHeJ_P0072564 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072565.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005669 105014288 - MGP_C3HHeJ_P0072565 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072566.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005675 105014313 - MGP_C3HHeJ_P0072566 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072567.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005780 105014288 - MGP_C3HHeJ_P0072567 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072568.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005853 105014288 - MGP_C3HHeJ_P0072568 1700016H13Rik protein_coding protein_coding MGP_C3HHeJ_T0072569.1 MGP_C3HHeJ_G0029501.1 mouse_genomes_project 5 105005853 105014289 - MGP_C3HHeJ_P0072569 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008038.1 MGP_C3HHeJ_G0006545.1 mouse_genomes_project 5 42406281 42407320 - Gm42555 lincRNA lincRNA MGP_C3HHeJ_T0014857.1 MGP_C3HHeJ_G0012961.1 mouse_genomes_project 5 78692770 78693134 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014829.1 MGP_C3HHeJ_G0012933.1 mouse_genomes_project 5 66525387 66525898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014708.1 MGP_C3HHeJ_G0012812.1 mouse_genomes_project 5 19412497 19413137 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001630.1 MGP_C3HHeJ_G0001555.1 mouse_genomes_project 5 67291510 67293148 - TEC TEC MGP_C3HHeJ_T0001838.1 MGP_C3HHeJ_G0001761.1 mouse_genomes_project 5 137507453 137508817 + TEC TEC MGP_C3HHeJ_T0001839.1 MGP_C3HHeJ_G0001761.1 mouse_genomes_project 5 137507465 137508064 + TEC TEC MGP_C3HHeJ_T0071764.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229252 73250185 + MGP_C3HHeJ_P0071764 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071765.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229260 73250297 + MGP_C3HHeJ_P0071765 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071766.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229261 73245823 + MGP_C3HHeJ_P0071766 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071767.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229275 73243238 + MGP_C3HHeJ_P0071767 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071768.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229300 73250142 + MGP_C3HHeJ_P0071768 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071769.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229309 73246874 + MGP_C3HHeJ_P0071769 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071770.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229363 73250169 + MGP_C3HHeJ_P0071770 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071771.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73229521 73231435 + MGP_C3HHeJ_P0071771 Ociad1 protein_coding protein_coding MGP_C3HHeJ_T0071772.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73231458 73250169 + MGP_C3HHeJ_P0071772 Ociad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071773.1 MGP_C3HHeJ_G0029323.1 mouse_genomes_project 5 73240579 73241612 + Ociad1 protein_coding retained_intron MGP_C3HHeJ_T0098138.1 MGP_C3HHeJ_G0036350.1 mouse_genomes_project 5 425203 425323 + n-R5s169 rRNA rRNA MGP_C3HHeJ_T0001586.1 MGP_C3HHeJ_G0001512.1 mouse_genomes_project 5 61999931 62000975 - TEC TEC MGP_C3HHeJ_T0071141.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40235422 40327092 - MGP_C3HHeJ_P0071141 Rab28 protein_coding protein_coding MGP_C3HHeJ_T0071142.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40235422 40327125 - MGP_C3HHeJ_P0071142 Rab28 protein_coding protein_coding MGP_C3HHeJ_T0071143.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40235423 40327128 - MGP_C3HHeJ_P0071143 Rab28 protein_coding protein_coding MGP_C3HHeJ_T0071144.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40236179 40237949 - Rab28 protein_coding retained_intron MGP_C3HHeJ_T0071145.1 MGP_C3HHeJ_G0029217.1 mouse_genomes_project 5 40236673 40239564 - Rab28 protein_coding retained_intron MGP_C3HHeJ_T0007979.1 MGP_C3HHeJ_G0006506.1 mouse_genomes_project 5 21759831 21762071 + lincRNA lincRNA MGP_C3HHeJ_T0100694.1 MGP_C3HHeJ_G0038888.1 mouse_genomes_project 5 52004149 52004261 - Gm23532 snoRNA snoRNA MGP_C3HHeJ_T0001775.1 MGP_C3HHeJ_G0001699.1 mouse_genomes_project 5 125429444 125434121 + TEC TEC MGP_C3HHeJ_T0011509.1 MGP_C3HHeJ_G0009642.1 mouse_genomes_project 5 113264808 113264919 - Gm27602 misc_RNA misc_RNA MGP_C3HHeJ_T0001509.1 MGP_C3HHeJ_G0001436.1 mouse_genomes_project 5 44198447 44200517 + TEC TEC MGP_C3HHeJ_T0008355.1 MGP_C3HHeJ_G0006770.1 mouse_genomes_project 5 151150370 151163894 - Gm34333 lincRNA lincRNA MGP_C3HHeJ_T0072202.1 MGP_C3HHeJ_G0029423.1 mouse_genomes_project 5 91294484 91332856 + MGP_C3HHeJ_P0072202 5830473C10Rik protein_coding protein_coding MGP_C3HHeJ_T0072203.1 MGP_C3HHeJ_G0029423.1 mouse_genomes_project 5 91294594 91312359 + MGP_C3HHeJ_P0072203 5830473C10Rik protein_coding protein_coding MGP_C3HHeJ_T0074053.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127285938 127364472 - MGP_C3HHeJ_P0074053 Mphosph9 protein_coding protein_coding MGP_C3HHeJ_T0074054.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127287648 127364349 - MGP_C3HHeJ_P0074054 Mphosph9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074055.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127288648 127364352 - MGP_C3HHeJ_P0074055 Mphosph9 protein_coding protein_coding MGP_C3HHeJ_T0074056.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127289600 127296081 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074057.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127293973 127300300 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074058.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127295917 127297986 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074059.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127296918 127298357 - Mphosph9 protein_coding retained_intron MGP_C3HHeJ_T0074060.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127324528 127364370 - MGP_C3HHeJ_P0074060 Mphosph9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074061.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127332131 127361627 - MGP_C3HHeJ_P0074061 Mphosph9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074062.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127351465 127364472 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0074063.1 MGP_C3HHeJ_G0029784.1 mouse_genomes_project 5 127351465 127364352 - Mphosph9 protein_coding processed_transcript MGP_C3HHeJ_T0071581.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66301473 66313720 + MGP_C3HHeJ_P0071581 Uchl1 protein_coding protein_coding MGP_C3HHeJ_T0071582.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66301624 66302230 + Uchl1 protein_coding retained_intron MGP_C3HHeJ_T0071583.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66302276 66313715 + Uchl1 protein_coding retained_intron MGP_C3HHeJ_T0071584.1 MGP_C3HHeJ_G0029290.1 mouse_genomes_project 5 66310176 66313423 + Uchl1 protein_coding retained_intron MGP_C3HHeJ_T0004660.1 MGP_C3HHeJ_G0004027.1 mouse_genomes_project 5 91792309 91810811 - Gm42532 antisense antisense MGP_C3HHeJ_T0001662.1 MGP_C3HHeJ_G0001586.1 mouse_genomes_project 5 74418481 74420075 - TEC TEC MGP_C3HHeJ_T0014852.1 MGP_C3HHeJ_G0012956.1 mouse_genomes_project 5 76794752 76795193 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101229.1 MGP_C3HHeJ_G0039360.1 mouse_genomes_project 5 76224153 76224623 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001676.1 MGP_C3HHeJ_G0001600.1 mouse_genomes_project 5 91126366 91129009 + TEC TEC MGP_C3HHeJ_T0101217.1 MGP_C3HHeJ_G0039351.1 mouse_genomes_project 5 31495882 31497044 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101218.1 MGP_C3HHeJ_G0039351.1 mouse_genomes_project 5 31496569 31497356 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0070816.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32912543 32931685 - MGP_C3HHeJ_P0070816 Tnip2 protein_coding protein_coding MGP_C3HHeJ_T0070817.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32912543 32931657 - MGP_C3HHeJ_P0070817 Tnip2 protein_coding protein_coding MGP_C3HHeJ_T0070818.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32912586 32931632 - MGP_C3HHeJ_P0070818 Tnip2 protein_coding protein_coding MGP_C3HHeJ_T0070819.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32916061 32918075 - Tnip2 protein_coding retained_intron MGP_C3HHeJ_T0070820.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32917628 32931543 - Tnip2 protein_coding retained_intron MGP_C3HHeJ_T0070821.1 MGP_C3HHeJ_G0029164.1 mouse_genomes_project 5 32919742 32931354 - Tnip2 protein_coding retained_intron MGP_C3HHeJ_T0014927.1 MGP_C3HHeJ_G0013031.1 mouse_genomes_project 5 109780885 109781307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001821.1 MGP_C3HHeJ_G0001744.1 mouse_genomes_project 5 135194884 135195632 - TEC TEC MGP_C3HHeJ_T0072705.1 MGP_C3HHeJ_G0029535.1 mouse_genomes_project 5 109113994 109117486 + MGP_C3HHeJ_P0072705 Lpcat2b protein_coding protein_coding MGP_C3HHeJ_T0014959.1 MGP_C3HHeJ_G0013063.1 mouse_genomes_project 5 119481627 119482208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070810.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32777132 32902883 + MGP_C3HHeJ_P0070810 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070811.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32825949 32902174 + MGP_C3HHeJ_P0070811 Fam193a protein_coding unknown_likely_coding MGP_C3HHeJ_T0070812.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32843032 32902174 + MGP_C3HHeJ_P0070812 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070813.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32847912 32860318 + MGP_C3HHeJ_P0070813 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070814.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32860411 32874712 + MGP_C3HHeJ_P0070814 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0070815.1 MGP_C3HHeJ_G0029163.1 mouse_genomes_project 5 32881747 32894116 + MGP_C3HHeJ_P0070815 Fam193a protein_coding protein_coding MGP_C3HHeJ_T0074661.1 MGP_C3HHeJ_G0029891.1 mouse_genomes_project 5 139561633 139570485 + MGP_C3HHeJ_P0074661 Upk3b protein_coding protein_coding MGP_C3HHeJ_T0010631.1 MGP_C3HHeJ_G0008764.1 mouse_genomes_project 5 128538845 128538922 + Gm27551 miRNA miRNA MGP_C3HHeJ_T0071233.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44186122 44192979 + MGP_C3HHeJ_P0071233 Med28 protein_coding protein_coding MGP_C3HHeJ_T0071234.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44186153 44196653 + MGP_C3HHeJ_P0071234 Med28 protein_coding protein_coding MGP_C3HHeJ_T0071235.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44186834 44192986 + Med28 protein_coding processed_transcript MGP_C3HHeJ_T0071236.1 MGP_C3HHeJ_G0029234.1 mouse_genomes_project 5 44189518 44192559 + Med28 protein_coding retained_intron MGP_C3HHeJ_T0070873.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33187068 33248903 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070874.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33187072 33342519 + MGP_C3HHeJ_P0070874 Htt protein_coding protein_coding MGP_C3HHeJ_T0070875.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33187089 33240211 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070876.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33221260 33223874 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070877.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33232229 33237295 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070878.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33235510 33237781 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070879.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33302067 33309854 + Htt protein_coding retained_intron MGP_C3HHeJ_T0070880.1 MGP_C3HHeJ_G0029170.1 mouse_genomes_project 5 33311326 33329593 + Htt protein_coding retained_intron MGP_C3HHeJ_T0100698.1 MGP_C3HHeJ_G0038892.1 mouse_genomes_project 5 56401906 56402034 - Gm23015 snoRNA snoRNA MGP_C3HHeJ_T0074975.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141859043 141866884 - MGP_C3HHeJ_P0074975 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074976.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141859060 141860178 - Mcm7 protein_coding retained_intron MGP_C3HHeJ_T0074977.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141859060 141866280 - MGP_C3HHeJ_P0074977 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074978.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141862521 141864843 - Mcm7 protein_coding retained_intron MGP_C3HHeJ_T0074979.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141862917 141865728 - MGP_C3HHeJ_P0074979 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074980.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863170 141864105 - Mcm7 protein_coding retained_intron MGP_C3HHeJ_T0074981.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863339 141865479 - MGP_C3HHeJ_P0074981 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074982.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863340 141866277 - MGP_C3HHeJ_P0074982 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074983.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863670 141865123 - MGP_C3HHeJ_P0074983 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0074984.1 MGP_C3HHeJ_G0029952.1 mouse_genomes_project 5 141863872 141865703 - MGP_C3HHeJ_P0074984 Mcm7 protein_coding protein_coding MGP_C3HHeJ_T0001657.1 MGP_C3HHeJ_G0001581.1 mouse_genomes_project 5 74024579 74025326 + TEC TEC MGP_C3HHeJ_T0073121.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976967 115977998 - MGP_C3HHeJ_P0073121 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073122.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976978 115989853 - MGP_C3HHeJ_P0073122 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073123.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976986 115977749 - MGP_C3HHeJ_P0073123 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073124.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115976986 115977689 - MGP_C3HHeJ_P0073124 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073125.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115978477 115991998 - MGP_C3HHeJ_P0073125 Selplg protein_coding protein_coding MGP_C3HHeJ_T0073126.1 MGP_C3HHeJ_G0029621.1 mouse_genomes_project 5 115987512 115989824 - Selplg protein_coding retained_intron MGP_C3HHeJ_T0008137.1 MGP_C3HHeJ_G0006627.1 mouse_genomes_project 5 100710982 100713631 + Gm43253 lincRNA lincRNA MGP_C3HHeJ_T0071450.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739447 64805249 + MGP_C3HHeJ_P0071450 Wdr19 protein_coding protein_coding MGP_C3HHeJ_T0071451.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739449 64805258 + MGP_C3HHeJ_P0071451 Wdr19 protein_coding protein_coding MGP_C3HHeJ_T0071452.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739451 64745066 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071453.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739468 64789549 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071454.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739482 64770970 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071455.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64739491 64764259 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071456.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64742366 64805253 + Wdr19 protein_coding retained_intron MGP_C3HHeJ_T0071457.1 MGP_C3HHeJ_G0029273.1 mouse_genomes_project 5 64801267 64805252 + MGP_C3HHeJ_P0071457 Wdr19 protein_coding protein_coding MGP_C3HHeJ_T0072599.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834892 105840893 + MGP_C3HHeJ_P0072599 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072600.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834892 105840891 + MGP_C3HHeJ_P0072600 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072601.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834895 105840890 + MGP_C3HHeJ_P0072601 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072602.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834913 105839379 + MGP_C3HHeJ_P0072602 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072603.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834916 105839341 + MGP_C3HHeJ_P0072603 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072604.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105834932 105837539 + MGP_C3HHeJ_P0072604 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0072605.1 MGP_C3HHeJ_G0029512.1 mouse_genomes_project 5 105836020 105840886 + MGP_C3HHeJ_P0072605 Spp1 protein_coding protein_coding MGP_C3HHeJ_T0001548.1 MGP_C3HHeJ_G0001474.1 mouse_genomes_project 5 48989858 48992425 + TEC TEC MGP_C3HHeJ_T0073451.1 MGP_C3HHeJ_G0029680.1 mouse_genomes_project 5 119715989 119721034 - MGP_C3HHeJ_P0073451 Pebp1 protein_coding protein_coding MGP_C3HHeJ_T0073452.1 MGP_C3HHeJ_G0029680.1 mouse_genomes_project 5 119716011 119721019 - MGP_C3HHeJ_P0073452 Pebp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073453.1 MGP_C3HHeJ_G0029680.1 mouse_genomes_project 5 119719241 119720976 - Pebp1 protein_coding retained_intron MGP_C3HHeJ_T0070330.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810339 28820643 + MGP_C3HHeJ_P0070330 Slc35f6 protein_coding protein_coding MGP_C3HHeJ_T0070331.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810351 28815683 + Slc35f6 protein_coding retained_intron MGP_C3HHeJ_T0070332.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810365 28820590 + MGP_C3HHeJ_P0070332 Slc35f6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070333.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810374 28818499 + Slc35f6 protein_coding retained_intron MGP_C3HHeJ_T0070334.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810410 28820590 + MGP_C3HHeJ_P0070334 Slc35f6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070335.1 MGP_C3HHeJ_G0029091.1 mouse_genomes_project 5 28810420 28822132 + MGP_C3HHeJ_P0070335 Slc35f6 protein_coding protein_coding MGP_C3HHeJ_T0014828.1 MGP_C3HHeJ_G0012932.1 mouse_genomes_project 5 65973681 65973949 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070769.1 MGP_C3HHeJ_G0029156.1 mouse_genomes_project 5 32384703 32394638 + MGP_C3HHeJ_P0070769 Nat8l protein_coding protein_coding MGP_C3HHeJ_T0070770.1 MGP_C3HHeJ_G0029156.1 mouse_genomes_project 5 32388482 32389563 + Nat8l protein_coding processed_transcript MGP_C3HHeJ_T0001667.1 MGP_C3HHeJ_G0001591.1 mouse_genomes_project 5 75877686 75879808 + TEC TEC MGP_C3HHeJ_T0011505.1 MGP_C3HHeJ_G0009638.1 mouse_genomes_project 5 101702011 101702149 + Gm28030 misc_RNA misc_RNA MGP_C3HHeJ_T0101422.1 MGP_C3HHeJ_G0039452.1 mouse_genomes_project 5 30812311 30819060 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101423.1 MGP_C3HHeJ_G0039452.1 mouse_genomes_project 5 30812315 30819116 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0008121.1 MGP_C3HHeJ_G0006614.1 mouse_genomes_project 5 93624313 93631861 - 4932430I15Rik lincRNA lincRNA MGP_C3HHeJ_T0071524.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65453169 65488547 + MGP_C3HHeJ_P0071524 Rhoh protein_coding protein_coding MGP_C3HHeJ_T0071525.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65454775 65485290 + MGP_C3HHeJ_P0071525 Rhoh protein_coding protein_coding MGP_C3HHeJ_T0071526.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65455348 65459704 + Rhoh protein_coding processed_transcript MGP_C3HHeJ_T0071527.1 MGP_C3HHeJ_G0029284.1 mouse_genomes_project 5 65455386 65460164 + Rhoh protein_coding retained_intron MGP_C3HHeJ_T0014860.1 MGP_C3HHeJ_G0012964.1 mouse_genomes_project 5 81283657 81284531 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075385.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148186931 148214766 - MGP_C3HHeJ_P0075385 Ccz1 protein_coding protein_coding MGP_C3HHeJ_T0075386.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148190497 148191607 - Ccz1 protein_coding processed_transcript MGP_C3HHeJ_T0075387.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148191500 148203225 - Ccz1 protein_coding retained_intron MGP_C3HHeJ_T0075388.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148209149 148214790 - Ccz1 protein_coding retained_intron MGP_C3HHeJ_T0075389.1 MGP_C3HHeJ_G0030040.1 mouse_genomes_project 5 148212381 148214790 - Ccz1 protein_coding retained_intron MGP_C3HHeJ_T0014712.1 MGP_C3HHeJ_G0012816.1 mouse_genomes_project 5 20043484 20043854 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074337.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133368608 133414579 + MGP_C3HHeJ_P0074337 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074338.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133368634 133410679 + MGP_C3HHeJ_P0074338 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074339.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385923 133408989 + MGP_C3HHeJ_P0074339 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074340.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385923 133414574 + MGP_C3HHeJ_P0074340 Rabgef1 protein_coding protein_coding MGP_C3HHeJ_T0074341.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385970 133406309 + Rabgef1 protein_coding processed_transcript MGP_C3HHeJ_T0074342.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133385982 133390084 + Rabgef1 protein_coding retained_intron MGP_C3HHeJ_T0074343.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133406271 133411228 + Rabgef1 protein_coding retained_intron MGP_C3HHeJ_T0074344.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133411617 133413212 + Rabgef1 protein_coding retained_intron MGP_C3HHeJ_T0074345.1 MGP_C3HHeJ_G0029836.1 mouse_genomes_project 5 133413402 133414287 + MGP_C3HHeJ_P0074345 Rabgef1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072859.1 MGP_C3HHeJ_G0029566.1 mouse_genomes_project 5 110891541 110934229 - MGP_C3HHeJ_P0072859 protein_coding protein_coding MGP_C3HHeJ_T0001466.1 MGP_C3HHeJ_G0001393.1 mouse_genomes_project 5 30982859 30983710 - TEC TEC MGP_C3HHeJ_T0073898.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126145165 126232580 + Psmd9 protein_coding processed_transcript MGP_C3HHeJ_T0073905.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126220723 126238252 + Psmd9 protein_coding processed_transcript MGP_C3HHeJ_T0073906.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126220723 126244882 + MGP_C3HHeJ_P0073906 Psmd9 protein_coding protein_coding MGP_C3HHeJ_T0073907.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126220791 126221560 + Psmd9 protein_coding retained_intron MGP_C3HHeJ_T0073908.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126221482 126223381 + Psmd9 protein_coding TEC MGP_C3HHeJ_T0073909.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126227392 126243273 + MGP_C3HHeJ_P0073909 Psmd9 protein_coding protein_coding MGP_C3HHeJ_T0073910.1 MGP_C3HHeJ_G0029759.1 mouse_genomes_project 5 126234820 126243273 + MGP_C3HHeJ_P0073910 Psmd9 protein_coding protein_coding MGP_C3HHeJ_T0014692.1 MGP_C3HHeJ_G0012796.1 mouse_genomes_project 5 14036662 14037681 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004739.1 MGP_C3HHeJ_G0004077.1 mouse_genomes_project 5 123021993 123035936 - Gm27199 antisense antisense MGP_C3HHeJ_T0072204.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338126 91375395 - MGP_C3HHeJ_P0072204 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072205.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338126 91375395 - MGP_C3HHeJ_P0072205 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072206.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338673 91344880 - MGP_C3HHeJ_P0072206 Rassf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072207.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91338881 91375562 - MGP_C3HHeJ_P0072207 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072208.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91352589 91375533 - MGP_C3HHeJ_P0072208 Rassf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072209.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91357126 91375432 - MGP_C3HHeJ_P0072209 Rassf6 protein_coding protein_coding MGP_C3HHeJ_T0072210.1 MGP_C3HHeJ_G0029424.1 mouse_genomes_project 5 91373379 91375560 - Rassf6 protein_coding processed_transcript MGP_C3HHeJ_T0014745.1 MGP_C3HHeJ_G0012849.1 mouse_genomes_project 5 27814274 27814566 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001842.1 MGP_C3HHeJ_G0001764.1 mouse_genomes_project 5 137885606 137887071 - TEC TEC MGP_C3HHeJ_T0004715.1 MGP_C3HHeJ_G0004064.1 mouse_genomes_project 5 117247521 117250100 + Hnf1aos2 antisense antisense MGP_C3HHeJ_T0074290.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133016986 133034771 + MGP_C3HHeJ_P0074290 Sumf2 protein_coding protein_coding MGP_C3HHeJ_T0074291.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133017011 133025567 + MGP_C3HHeJ_P0074291 Sumf2 protein_coding protein_coding MGP_C3HHeJ_T0074292.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133017020 133025657 + Sumf2 protein_coding processed_transcript MGP_C3HHeJ_T0074293.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133017020 133034153 + MGP_C3HHeJ_P0074293 Sumf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074294.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133023329 133033519 + Sumf2 protein_coding processed_transcript MGP_C3HHeJ_T0074295.1 MGP_C3HHeJ_G0029826.1 mouse_genomes_project 5 133023329 133033519 + Sumf2 protein_coding processed_transcript MGP_C3HHeJ_T0071958.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77394103 77436047 + MGP_C3HHeJ_P0071958 Polr2b protein_coding protein_coding MGP_C3HHeJ_T0071959.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77394447 77397234 + Polr2b protein_coding retained_intron MGP_C3HHeJ_T0071960.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77412081 77413297 + Polr2b protein_coding retained_intron MGP_C3HHeJ_T0071961.1 MGP_C3HHeJ_G0029358.1 mouse_genomes_project 5 77427094 77429659 + Polr2b protein_coding retained_intron MGP_C3HHeJ_T0014942.1 MGP_C3HHeJ_G0013046.1 mouse_genomes_project 5 112656752 112658444 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008145.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101692880 101702446 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0008146.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101695688 101702427 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0008147.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101701646 101702286 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0008148.1 MGP_C3HHeJ_G0006633.1 mouse_genomes_project 5 101701904 101702426 - 5430416N02Rik lincRNA lincRNA MGP_C3HHeJ_T0072611.1 MGP_C3HHeJ_G0029516.1 mouse_genomes_project 5 106409788 106459767 - MGP_C3HHeJ_P0072611 Abcg3 protein_coding protein_coding MGP_C3HHeJ_T0072612.1 MGP_C3HHeJ_G0029516.1 mouse_genomes_project 5 106410421 106454766 - MGP_C3HHeJ_P0072612 Abcg3 protein_coding protein_coding MGP_C3HHeJ_T0001582.1 MGP_C3HHeJ_G0001508.1 mouse_genomes_project 5 57405361 57408853 + TEC TEC MGP_C3HHeJ_T0008098.1 MGP_C3HHeJ_G0006594.1 mouse_genomes_project 5 77066516 77078975 - 1700112J05Rik lincRNA lincRNA MGP_C3HHeJ_T0071806.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74179076 74517566 - MGP_C3HHeJ_P0071806 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071807.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74179339 74265746 - Scfd2 protein_coding processed_transcript MGP_C3HHeJ_T0071808.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74180338 74201868 - Scfd2 protein_coding retained_intron MGP_C3HHeJ_T0071809.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74180341 74517569 - MGP_C3HHeJ_P0071809 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071810.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74383029 74385684 - MGP_C3HHeJ_P0071810 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071811.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74436724 74517546 - MGP_C3HHeJ_P0071811 Scfd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071812.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74445292 74517576 - MGP_C3HHeJ_P0071812 Scfd2 protein_coding protein_coding MGP_C3HHeJ_T0071813.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74447405 74470513 - Scfd2 protein_coding retained_intron MGP_C3HHeJ_T0071814.1 MGP_C3HHeJ_G0029332.1 mouse_genomes_project 5 74500371 74517559 - Scfd2 protein_coding processed_transcript MGP_C3HHeJ_T0014901.1 MGP_C3HHeJ_G0013005.1 mouse_genomes_project 5 101788492 101788926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071351.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52162720 52276059 - MGP_C3HHeJ_P0071351 Sel1l3 protein_coding protein_coding MGP_C3HHeJ_T0071352.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52201792 52275879 - Sel1l3 protein_coding retained_intron MGP_C3HHeJ_T0071353.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52212922 52216297 - Sel1l3 protein_coding retained_intron MGP_C3HHeJ_T0071354.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52215211 52232720 - Sel1l3 protein_coding processed_transcript MGP_C3HHeJ_T0071355.1 MGP_C3HHeJ_G0029252.1 mouse_genomes_project 5 52260793 52277278 - Sel1l3 protein_coding retained_intron MGP_C3HHeJ_T0098144.1 MGP_C3HHeJ_G0036356.1 mouse_genomes_project 5 52499295 52499405 + Gm26486 rRNA rRNA MGP_C3HHeJ_T0014810.1 MGP_C3HHeJ_G0012914.1 mouse_genomes_project 5 58339142 58340096 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014893.1 MGP_C3HHeJ_G0012997.1 mouse_genomes_project 5 97287342 97287753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098585.1 MGP_C3HHeJ_G0036780.1 mouse_genomes_project 5 126520705 126526344 + Gm15751 sense_overlapping sense_overlapping MGP_C3HHeJ_T0004582.1 MGP_C3HHeJ_G0003963.1 mouse_genomes_project 5 28980905 28985541 - Gm15461 antisense antisense MGP_C3HHeJ_T0075603.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152638170 153013090 + MGP_C3HHeJ_P0075603 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075604.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152638192 152763379 + MGP_C3HHeJ_P0075604 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075605.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152769700 152923333 + Mtus2 protein_coding retained_intron MGP_C3HHeJ_T0075606.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152781853 152899191 + Mtus2 protein_coding processed_transcript MGP_C3HHeJ_T0075607.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152896276 153013087 + MGP_C3HHeJ_P0075607 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075608.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152925684 152928865 + Mtus2 protein_coding retained_intron MGP_C3HHeJ_T0075609.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152954511 153011096 + MGP_C3HHeJ_P0075609 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075610.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152954586 153010577 + MGP_C3HHeJ_P0075610 Mtus2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075611.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152954639 153011063 + MGP_C3HHeJ_P0075611 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075612.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152992340 153010485 + MGP_C3HHeJ_P0075612 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0075613.1 MGP_C3HHeJ_G0030090.1 mouse_genomes_project 5 152992349 153011025 + MGP_C3HHeJ_P0075613 Mtus2 protein_coding protein_coding MGP_C3HHeJ_T0071011.1 MGP_C3HHeJ_G0029193.1 mouse_genomes_project 5 35260413 35262576 - MGP_C3HHeJ_P0071011 protein_coding protein_coding MGP_C3HHeJ_T0001621.1 MGP_C3HHeJ_G0001546.1 mouse_genomes_project 5 66148852 66151236 - TEC TEC MGP_C3HHeJ_T0074766.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140617833 140624796 + MGP_C3HHeJ_P0074766 Vgf protein_coding protein_coding MGP_C3HHeJ_T0074767.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140621739 140624796 + MGP_C3HHeJ_P0074767 Vgf protein_coding protein_coding MGP_C3HHeJ_T0074768.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140621808 140624473 + MGP_C3HHeJ_P0074768 Vgf protein_coding protein_coding MGP_C3HHeJ_T0074769.1 MGP_C3HHeJ_G0029908.1 mouse_genomes_project 5 140622145 140622852 + MGP_C3HHeJ_P0074769 Vgf protein_coding protein_coding MGP_C3HHeJ_T0004789.1 MGP_C3HHeJ_G0004115.1 mouse_genomes_project 5 139660709 139661414 - Gm43604 antisense antisense MGP_C3HHeJ_T0074909.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141395042 141405145 - MGP_C3HHeJ_P0074909 Nyap1 protein_coding protein_coding MGP_C3HHeJ_T0074910.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141396056 141406754 - MGP_C3HHeJ_P0074910 Nyap1 protein_coding protein_coding MGP_C3HHeJ_T0074911.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141396825 141404865 - MGP_C3HHeJ_P0074911 Nyap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074912.1 MGP_C3HHeJ_G0029935.1 mouse_genomes_project 5 141398024 141406249 - MGP_C3HHeJ_P0074912 Nyap1 protein_coding protein_coding MGP_C3HHeJ_T0014937.1 MGP_C3HHeJ_G0013041.1 mouse_genomes_project 5 111436530 111437107 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071838.1 MGP_C3HHeJ_G0029335.1 mouse_genomes_project 5 74989634 75040653 - MGP_C3HHeJ_P0071838 Chic2 protein_coding protein_coding MGP_C3HHeJ_T0071839.1 MGP_C3HHeJ_G0029335.1 mouse_genomes_project 5 75002864 75040191 - Chic2 protein_coding retained_intron MGP_C3HHeJ_T0001405.1 MGP_C3HHeJ_G0001335.1 mouse_genomes_project 5 5820324 5823939 + TEC TEC MGP_C3HHeJ_T0071458.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64806692 64881944 - MGP_C3HHeJ_P0071458 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071459.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64806694 64882001 - MGP_C3HHeJ_P0071459 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071460.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64806694 64882050 - MGP_C3HHeJ_P0071460 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071461.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64807444 64881998 - MGP_C3HHeJ_P0071461 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071462.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64807918 64813869 - MGP_C3HHeJ_P0071462 Rfc1 protein_coding protein_coding MGP_C3HHeJ_T0071463.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64809088 64818347 - Rfc1 protein_coding retained_intron MGP_C3HHeJ_T0071464.1 MGP_C3HHeJ_G0029274.1 mouse_genomes_project 5 64855274 64881993 - Rfc1 protein_coding retained_intron MGP_C3HHeJ_T0004812.1 MGP_C3HHeJ_G0004130.1 mouse_genomes_project 5 148116907 148176570 - Gm17135 antisense antisense MGP_C3HHeJ_T0070243.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27328376 27481983 - MGP_C3HHeJ_P0070243 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070244.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27328388 27481989 - MGP_C3HHeJ_P0070244 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070245.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27330693 27481901 - MGP_C3HHeJ_P0070245 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070246.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27330947 27481983 - MGP_C3HHeJ_P0070246 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070247.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27331415 27481929 - MGP_C3HHeJ_P0070247 Lmbr1 protein_coding protein_coding MGP_C3HHeJ_T0070248.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27333592 27395264 - MGP_C3HHeJ_P0070248 Lmbr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070249.1 MGP_C3HHeJ_G0029072.1 mouse_genomes_project 5 27358627 27463133 - Lmbr1 protein_coding processed_transcript MGP_C3HHeJ_T0074501.1 MGP_C3HHeJ_G0029858.1 mouse_genomes_project 5 138318677 138323660 - MGP_C3HHeJ_P0074501 Wbscr28 protein_coding protein_coding MGP_C3HHeJ_T0074502.1 MGP_C3HHeJ_G0029858.1 mouse_genomes_project 5 138318678 138323660 - MGP_C3HHeJ_P0074502 Wbscr28 protein_coding protein_coding MGP_C3HHeJ_T0001820.1 MGP_C3HHeJ_G0001743.1 mouse_genomes_project 5 135171740 135174702 - TEC TEC MGP_C3HHeJ_T0004565.1 MGP_C3HHeJ_G0003950.1 mouse_genomes_project 5 16800569 16827347 - 4921504A21Rik antisense antisense MGP_C3HHeJ_T0004566.1 MGP_C3HHeJ_G0003950.1 mouse_genomes_project 5 16801494 16826960 - 4921504A21Rik antisense antisense MGP_C3HHeJ_T0015028.1 MGP_C3HHeJ_G0013132.1 mouse_genomes_project 5 152084961 152085183 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004748.1 MGP_C3HHeJ_G0004086.1 mouse_genomes_project 5 125520322 125523707 + Gm43301 antisense antisense MGP_C3HHeJ_T0072975.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112762890 112789290 - MGP_C3HHeJ_P0072975 Ulk1 protein_coding protein_coding MGP_C3HHeJ_T0072976.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765230 112767176 - MGP_C3HHeJ_P0072976 Ulk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072977.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765252 112768284 - MGP_C3HHeJ_P0072977 Ulk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072978.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765269 112766452 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072979.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112765324 112789246 - MGP_C3HHeJ_P0072979 Ulk1 protein_coding protein_coding MGP_C3HHeJ_T0072980.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112767121 112767898 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072981.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112767487 112768697 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072982.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112770630 112771425 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072983.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112770905 112772639 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0072984.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112771628 112775030 - Ulk1 protein_coding processed_transcript MGP_C3HHeJ_T0072985.1 MGP_C3HHeJ_G0029590.1 mouse_genomes_project 5 112772834 112775067 - Ulk1 protein_coding retained_intron MGP_C3HHeJ_T0001688.1 MGP_C3HHeJ_G0001612.1 mouse_genomes_project 5 98079883 98080403 + TEC TEC MGP_C3HHeJ_T0001546.1 MGP_C3HHeJ_G0001472.1 mouse_genomes_project 5 48447660 48450769 - TEC TEC MGP_C3HHeJ_T0072110.1 MGP_C3HHeJ_G0029392.1 mouse_genomes_project 5 88388525 88411321 + MGP_C3HHeJ_P0072110 Prr27 protein_coding protein_coding MGP_C3HHeJ_T0072111.1 MGP_C3HHeJ_G0029392.1 mouse_genomes_project 5 88388525 88411321 + MGP_C3HHeJ_P0072111 Prr27 protein_coding protein_coding MGP_C3HHeJ_T0073417.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118378465 118389342 - MGP_C3HHeJ_P0073417 Prkab1 protein_coding protein_coding MGP_C3HHeJ_T0073418.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118378469 118389388 - MGP_C3HHeJ_P0073418 Prkab1 protein_coding protein_coding MGP_C3HHeJ_T0073419.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379046 118380041 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073420.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379195 118383091 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073421.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379314 118389236 - MGP_C3HHeJ_P0073421 Prkab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073422.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118379529 118389331 - MGP_C3HHeJ_P0073422 Prkab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073423.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118382694 118389277 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073424.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118384586 118386526 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073425.1 MGP_C3HHeJ_G0029673.1 mouse_genomes_project 5 118388778 118389339 - Prkab1 protein_coding retained_intron MGP_C3HHeJ_T0073331.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117631649 117638748 + MGP_C3HHeJ_P0073331 Srsf9 protein_coding protein_coding MGP_C3HHeJ_T0073332.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117633323 117638677 + Srsf9 protein_coding processed_transcript MGP_C3HHeJ_T0073333.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117634307 117638318 + Srsf9 protein_coding processed_transcript MGP_C3HHeJ_T0073334.1 MGP_C3HHeJ_G0029660.1 mouse_genomes_project 5 117636245 117638677 + MGP_C3HHeJ_P0073334 Srsf9 protein_coding protein_coding MGP_C3HHeJ_T0073009.1 MGP_C3HHeJ_G0029597.1 mouse_genomes_project 5 114295402 114301403 - MGP_C3HHeJ_P0073009 Cryba4 protein_coding protein_coding MGP_C3HHeJ_T0073010.1 MGP_C3HHeJ_G0029597.1 mouse_genomes_project 5 114295403 114300051 - MGP_C3HHeJ_P0073010 Cryba4 protein_coding protein_coding MGP_C3HHeJ_T0073011.1 MGP_C3HHeJ_G0029597.1 mouse_genomes_project 5 114295442 114300691 - MGP_C3HHeJ_P0073011 Cryba4 protein_coding protein_coding MGP_C3HHeJ_T0099479.1 MGP_C3HHeJ_G0037673.1 mouse_genomes_project 5 120445664 120445771 - Gm25343 snRNA snRNA MGP_C3HHeJ_T0008040.1 MGP_C3HHeJ_G0006547.1 mouse_genomes_project 5 43517545 43530192 + Gm42750 lincRNA lincRNA MGP_C3HHeJ_T0001400.1 MGP_C3HHeJ_G0001330.1 mouse_genomes_project 5 2770531 2772468 + TEC TEC MGP_C3HHeJ_T0072059.1 MGP_C3HHeJ_G0029380.1 mouse_genomes_project 5 87771729 87785826 - MGP_C3HHeJ_P0072059 Ugt2b37 protein_coding protein_coding MGP_C3HHeJ_T0004554.1 MGP_C3HHeJ_G0003940.1 mouse_genomes_project 5 361533 362981 - Gm42435 antisense antisense MGP_C3HHeJ_T0098503.1 MGP_C3HHeJ_G0036708.1 mouse_genomes_project 5 125327052 125329627 + Gm42829 sense_intronic sense_intronic MGP_C3HHeJ_T0001791.1 MGP_C3HHeJ_G0001714.1 mouse_genomes_project 5 127586169 127587533 + TEC TEC MGP_C3HHeJ_T0001566.1 MGP_C3HHeJ_G0001492.1 mouse_genomes_project 5 54666223 54669934 + TEC TEC MGP_C3HHeJ_T0014952.1 MGP_C3HHeJ_G0013056.1 mouse_genomes_project 5 117141949 117142294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074913.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141410814 141433805 + MGP_C3HHeJ_P0074913 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074914.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141411043 141418390 + Tsc22d4 protein_coding retained_intron MGP_C3HHeJ_T0074915.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141411080 141427072 + MGP_C3HHeJ_P0074915 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074916.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141416843 141424562 + Tsc22d4 protein_coding retained_intron MGP_C3HHeJ_T0074917.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141423808 141425212 + MGP_C3HHeJ_P0074917 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074918.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141423848 141425096 + MGP_C3HHeJ_P0074918 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074919.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141427362 141433754 + MGP_C3HHeJ_P0074919 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074920.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141427373 141433754 + MGP_C3HHeJ_P0074920 Tsc22d4 protein_coding protein_coding MGP_C3HHeJ_T0074921.1 MGP_C3HHeJ_G0029936.1 mouse_genomes_project 5 141433051 141433644 + Tsc22d4 protein_coding processed_transcript MGP_C3HHeJ_T0014878.1 MGP_C3HHeJ_G0012982.1 mouse_genomes_project 5 89458909 89460539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017938.1 MGP_C3HHeJ_G0015364.1 mouse_genomes_project 5 73996060 73996626 + Usp46os2 processed_transcript retained_intron MGP_C3HHeJ_T0017939.1 MGP_C3HHeJ_G0015364.1 mouse_genomes_project 5 73996061 73996626 + Usp46os2 processed_transcript processed_transcript MGP_C3HHeJ_T0017940.1 MGP_C3HHeJ_G0015364.1 mouse_genomes_project 5 73996066 74004816 + Usp46os2 processed_transcript antisense MGP_C3HHeJ_T0072125.1 MGP_C3HHeJ_G0029399.1 mouse_genomes_project 5 88669786 88714588 + MGP_C3HHeJ_P0072125 Smr2 protein_coding protein_coding MGP_C3HHeJ_T0004577.1 MGP_C3HHeJ_G0003960.1 mouse_genomes_project 5 25632811 25634136 - Gm16058 antisense antisense MGP_C3HHeJ_T0008129.1 MGP_C3HHeJ_G0006622.1 mouse_genomes_project 5 98484409 98507371 + Gm33969 lincRNA lincRNA MGP_C3HHeJ_T0074959.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805957 141825439 + MGP_C3HHeJ_P0074959 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074960.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805970 141825491 + MGP_C3HHeJ_P0074960 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074961.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805991 141825440 + MGP_C3HHeJ_P0074961 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074962.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141805991 141825491 + MGP_C3HHeJ_P0074962 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074963.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141806034 141824473 + MGP_C3HHeJ_P0074963 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074964.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141806036 141815584 + MGP_C3HHeJ_P0074964 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0074965.1 MGP_C3HHeJ_G0029949.1 mouse_genomes_project 5 141806095 141825442 + MGP_C3HHeJ_P0074965 Zscan21 protein_coding protein_coding MGP_C3HHeJ_T0004569.1 MGP_C3HHeJ_G0003953.1 mouse_genomes_project 5 20087639 20089316 + Gm16110 antisense antisense MGP_C3HHeJ_T0075257.1 MGP_C3HHeJ_G0030013.1 mouse_genomes_project 5 146855504 146878168 + MGP_C3HHeJ_P0075257 Slc29a4 protein_coding protein_coding MGP_C3HHeJ_T0075258.1 MGP_C3HHeJ_G0030013.1 mouse_genomes_project 5 146866628 146890345 + MGP_C3HHeJ_P0075258 Slc29a4 protein_coding protein_coding MGP_C3HHeJ_T0074895.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141288421 141289955 + MGP_C3HHeJ_P0074895 Sap25 protein_coding protein_coding MGP_C3HHeJ_T0074896.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141288524 141289989 + MGP_C3HHeJ_P0074896 Sap25 protein_coding protein_coding MGP_C3HHeJ_T0074897.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141288582 141289428 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0074898.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141289030 141289634 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0074899.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141289264 141289924 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0074900.1 MGP_C3HHeJ_G0029932.1 mouse_genomes_project 5 141289435 141289986 + Sap25 protein_coding retained_intron MGP_C3HHeJ_T0010622.1 MGP_C3HHeJ_G0008755.1 mouse_genomes_project 5 116952555 116952619 + Mir7028 miRNA miRNA MGP_C3HHeJ_T0072263.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933703 93001052 + MGP_C3HHeJ_P0072263 Uso1 protein_coding protein_coding MGP_C3HHeJ_T0072264.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933711 93001055 + MGP_C3HHeJ_P0072264 Uso1 protein_coding protein_coding MGP_C3HHeJ_T0072265.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933712 92981611 + Uso1 protein_coding retained_intron MGP_C3HHeJ_T0072266.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92933731 93001053 + MGP_C3HHeJ_P0072266 Uso1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072267.1 MGP_C3HHeJ_G0029442.1 mouse_genomes_project 5 92978944 93001032 + Uso1 protein_coding processed_transcript MGP_C3HHeJ_T0007994.1 MGP_C3HHeJ_G0006516.1 mouse_genomes_project 5 27482297 27495333 + 4632411P08Rik lincRNA lincRNA MGP_C3HHeJ_T0102053.1 MGP_C3HHeJ_G0040018.1 mouse_genomes_project 5 128916536 128917219 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014874.1 MGP_C3HHeJ_G0012978.1 mouse_genomes_project 5 88752934 88753289 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008127.1 MGP_C3HHeJ_G0006620.1 mouse_genomes_project 5 98292607 98299409 + Gm43146 lincRNA lincRNA MGP_C3HHeJ_T0001551.1 MGP_C3HHeJ_G0001477.1 mouse_genomes_project 5 50480031 50482517 - TEC TEC MGP_C3HHeJ_T0072358.1 MGP_C3HHeJ_G0029459.1 mouse_genomes_project 5 94050576 94057580 + MGP_C3HHeJ_P0072358 2010109A12Rik protein_coding protein_coding MGP_C3HHeJ_T0072359.1 MGP_C3HHeJ_G0029459.1 mouse_genomes_project 5 94050591 94051508 + 2010109A12Rik protein_coding retained_intron MGP_C3HHeJ_T0008307.1 MGP_C3HHeJ_G0006735.1 mouse_genomes_project 5 130699383 130700756 + Gm42980 lincRNA lincRNA MGP_C3HHeJ_T0073358.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840756 117894031 + MGP_C3HHeJ_P0073358 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073359.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840791 117894026 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073360.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840888 117893022 + MGP_C3HHeJ_P0073360 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073361.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117840936 117887195 + MGP_C3HHeJ_P0073361 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073362.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117850443 117882939 + Pxn protein_coding processed_transcript MGP_C3HHeJ_T0073363.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117855292 117894026 + Pxn protein_coding processed_transcript MGP_C3HHeJ_T0073364.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882002 117883468 + Pxn protein_coding processed_transcript MGP_C3HHeJ_T0073365.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882140 117892545 + MGP_C3HHeJ_P0073365 Pxn protein_coding protein_coding MGP_C3HHeJ_T0073366.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882169 117883004 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073367.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117882851 117887812 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073368.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117883359 117883831 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0073369.1 MGP_C3HHeJ_G0029667.1 mouse_genomes_project 5 117889982 117890836 + Pxn protein_coding retained_intron MGP_C3HHeJ_T0070512.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443577 29454281 + MGP_C3HHeJ_P0070512 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070513.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443577 29454275 + MGP_C3HHeJ_P0070513 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070514.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443590 29447664 + MGP_C3HHeJ_P0070514 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070515.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443608 29448550 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070516.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443616 29447585 + MGP_C3HHeJ_P0070516 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070517.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29443645 29450629 + MGP_C3HHeJ_P0070517 Nrbp1 protein_coding protein_coding MGP_C3HHeJ_T0070518.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29446130 29447139 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070519.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29450137 29452696 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070520.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29452069 29454278 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070521.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29452305 29453448 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0070522.1 MGP_C3HHeJ_G0029118.1 mouse_genomes_project 5 29453059 29454164 + Nrbp1 protein_coding retained_intron MGP_C3HHeJ_T0008108.1 MGP_C3HHeJ_G0006601.1 mouse_genomes_project 5 84891097 84894895 + Gm43532 lincRNA lincRNA MGP_C3HHeJ_T0098155.1 MGP_C3HHeJ_G0036367.1 mouse_genomes_project 5 153472674 153472792 - n-R5s179 rRNA rRNA MGP_C3HHeJ_T0070445.1 MGP_C3HHeJ_G0029108.1 mouse_genomes_project 5 29307485 29328279 + MGP_C3HHeJ_P0070445 Trim54 protein_coding protein_coding MGP_C3HHeJ_T0070446.1 MGP_C3HHeJ_G0029108.1 mouse_genomes_project 5 29307507 29328281 + MGP_C3HHeJ_P0070446 Trim54 protein_coding protein_coding MGP_C3HHeJ_T0014897.1 MGP_C3HHeJ_G0013001.1 mouse_genomes_project 5 99646865 99647246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075133.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143418109 143431436 - MGP_C3HHeJ_P0075133 Zfand2a protein_coding protein_coding MGP_C3HHeJ_T0075134.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143418113 143431404 - MGP_C3HHeJ_P0075134 Zfand2a protein_coding protein_coding MGP_C3HHeJ_T0075135.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143421819 143425844 - Zfand2a protein_coding processed_transcript MGP_C3HHeJ_T0075136.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143425382 143431351 - MGP_C3HHeJ_P0075136 Zfand2a protein_coding protein_coding MGP_C3HHeJ_T0075137.1 MGP_C3HHeJ_G0029983.1 mouse_genomes_project 5 143425977 143431315 - Zfand2a protein_coding processed_transcript MGP_C3HHeJ_T0071827.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582193 74670880 - MGP_C3HHeJ_P0071827 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071828.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582193 74670879 - MGP_C3HHeJ_P0071828 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071829.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582193 74679673 - MGP_C3HHeJ_P0071829 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071830.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74582425 74670865 - MGP_C3HHeJ_P0071830 Lnx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071832.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74670807 - MGP_C3HHeJ_P0071832 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071833.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74670636 - MGP_C3HHeJ_P0071833 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071834.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74670880 - MGP_C3HHeJ_P0071834 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071835.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74586850 74697571 - MGP_C3HHeJ_P0071835 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071836.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74587522 74612991 - MGP_C3HHeJ_P0071836 Lnx1 protein_coding protein_coding MGP_C3HHeJ_T0071837.1 MGP_C3HHeJ_G0029334.1 mouse_genomes_project 5 74598592 74670606 - MGP_C3HHeJ_P0071837 Lnx1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0004823.1 MGP_C3HHeJ_G0004138.1 mouse_genomes_project 5 154280739 154332247 - Gm15997 antisense antisense MGP_C3HHeJ_T0075478.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149445682 149454037 - MGP_C3HHeJ_P0075478 Atp5j2 protein_coding protein_coding MGP_C3HHeJ_T0075479.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149445690 149453567 - MGP_C3HHeJ_P0075479 Atp5j2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075480.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149445693 149453567 - MGP_C3HHeJ_P0075480 Atp5j2 protein_coding protein_coding MGP_C3HHeJ_T0075481.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149446370 149453486 - MGP_C3HHeJ_P0075481 Atp5j2 protein_coding protein_coding MGP_C3HHeJ_T0075482.1 MGP_C3HHeJ_G0030058.1 mouse_genomes_project 5 149451401 149453503 - Atp5j2 protein_coding retained_intron MGP_C3HHeJ_T0071999.1 MGP_C3HHeJ_G0029361.1 mouse_genomes_project 5 83694228 83773104 - MGP_C3HHeJ_P0071999 Tecrl protein_coding protein_coding MGP_C3HHeJ_T0072000.1 MGP_C3HHeJ_G0029361.1 mouse_genomes_project 5 83708718 83772865 - MGP_C3HHeJ_P0072000 Tecrl protein_coding protein_coding MGP_C3HHeJ_T0004624.1 MGP_C3HHeJ_G0003996.1 mouse_genomes_project 5 52603708 52607178 - Gm10441 antisense antisense MGP_C3HHeJ_T0071515.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342164 65412610 + MGP_C3HHeJ_P0071515 N4bp2 protein_coding protein_coding MGP_C3HHeJ_T0071516.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342622 65366069 + N4bp2 protein_coding processed_transcript MGP_C3HHeJ_T0071517.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342622 65355331 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071518.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65342763 65399013 + MGP_C3HHeJ_P0071518 N4bp2 protein_coding protein_coding MGP_C3HHeJ_T0071519.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65362757 65364911 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071520.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65365942 65409152 + MGP_C3HHeJ_P0071520 N4bp2 protein_coding protein_coding MGP_C3HHeJ_T0071521.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65381856 65384972 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071522.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65390483 65395808 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0071523.1 MGP_C3HHeJ_G0029283.1 mouse_genomes_project 5 65407743 65409376 + N4bp2 protein_coding retained_intron MGP_C3HHeJ_T0011518.1 MGP_C3HHeJ_G0009651.1 mouse_genomes_project 5 137535819 137536107 + Gm24139 misc_RNA misc_RNA MGP_C3HHeJ_T0073638.1 MGP_C3HHeJ_G0029723.1 mouse_genomes_project 5 124287721 124291059 - MGP_C3HHeJ_P0073638 Adam1b protein_coding protein_coding MGP_C3HHeJ_T0008018.1 MGP_C3HHeJ_G0006531.1 mouse_genomes_project 5 36302853 36303626 + Gm43763 lincRNA lincRNA MGP_C3HHeJ_T0072629.1 MGP_C3HHeJ_G0029522.1 mouse_genomes_project 5 106864778 106884111 - MGP_C3HHeJ_P0072629 protein_coding protein_coding MGP_C3HHeJ_T0072631.1 MGP_C3HHeJ_G0029522.1 mouse_genomes_project 5 106869560 106871652 - protein_coding retained_intron MGP_C3HHeJ_T0001726.1 MGP_C3HHeJ_G0001650.1 mouse_genomes_project 5 114421313 114422574 + TEC TEC MGP_C3HHeJ_T0099489.1 MGP_C3HHeJ_G0037683.1 mouse_genomes_project 5 139375216 139375323 + Gm22450 snRNA snRNA MGP_C3HHeJ_T0001401.1 MGP_C3HHeJ_G0001331.1 mouse_genomes_project 5 4333635 4336030 - TEC TEC MGP_C3HHeJ_T0014746.1 MGP_C3HHeJ_G0012850.1 mouse_genomes_project 5 27845583 27845962 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010596.1 MGP_C3HHeJ_G0008729.1 mouse_genomes_project 5 63588735 63588813 - Gm23967 miRNA miRNA MGP_C3HHeJ_T0001739.1 MGP_C3HHeJ_G0001663.1 mouse_genomes_project 5 117323536 117324851 + TEC TEC MGP_C3HHeJ_T0071893.1 MGP_C3HHeJ_G0029346.1 mouse_genomes_project 5 76634118 76692489 + Cep135 protein_coding retained_intron MGP_C3HHeJ_T0071894.1 MGP_C3HHeJ_G0029346.1 mouse_genomes_project 5 76634121 76694047 + MGP_C3HHeJ_P0071894 Cep135 protein_coding protein_coding MGP_C3HHeJ_T0071895.1 MGP_C3HHeJ_G0029346.1 mouse_genomes_project 5 76637134 76694046 + MGP_C3HHeJ_P0071895 Cep135 protein_coding protein_coding MGP_C3HHeJ_T0004698.1 MGP_C3HHeJ_G0004050.1 mouse_genomes_project 5 112185160 112185754 - Gm43137 antisense antisense MGP_C3HHeJ_T0015033.1 MGP_C3HHeJ_G0013137.1 mouse_genomes_project 5 154294181 154294731 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099434.1 MGP_C3HHeJ_G0037628.1 mouse_genomes_project 5 37052811 37052947 + Gm22249 snRNA snRNA MGP_C3HHeJ_T0071158.1 MGP_C3HHeJ_G0029222.1 mouse_genomes_project 5 42103949 42207670 + MGP_C3HHeJ_P0071158 C1qtnf7 protein_coding protein_coding MGP_C3HHeJ_T0071159.1 MGP_C3HHeJ_G0029222.1 mouse_genomes_project 5 42104173 42197652 + MGP_C3HHeJ_P0071159 C1qtnf7 protein_coding protein_coding MGP_C3HHeJ_T0071160.1 MGP_C3HHeJ_G0029222.1 mouse_genomes_project 5 42190301 42205453 + MGP_C3HHeJ_P0071160 C1qtnf7 protein_coding protein_coding MGP_C3HHeJ_T0001857.1 MGP_C3HHeJ_G0001779.1 mouse_genomes_project 5 145406567 145407248 - TEC TEC MGP_C3HHeJ_T0008181.1 MGP_C3HHeJ_G0006659.1 mouse_genomes_project 5 110147510 110147985 - Gm42517 lincRNA lincRNA MGP_C3HHeJ_T0074886.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276212 141288182 + MGP_C3HHeJ_P0074886 protein_coding protein_coding MGP_C3HHeJ_T0074887.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276234 141283887 + protein_coding retained_intron MGP_C3HHeJ_T0074888.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276243 141284702 + MGP_C3HHeJ_P0074888 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074890.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276269 141288187 + MGP_C3HHeJ_P0074890 protein_coding protein_coding MGP_C3HHeJ_T0074891.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141276269 141280979 + MGP_C3HHeJ_P0074891 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074892.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141277221 141287268 + MGP_C3HHeJ_P0074892 protein_coding protein_coding MGP_C3HHeJ_T0074893.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141285407 141286451 + MGP_C3HHeJ_P0074893 protein_coding protein_coding MGP_C3HHeJ_T0074894.1 MGP_C3HHeJ_G0029930.1 mouse_genomes_project 5 141286453 141287327 + MGP_C3HHeJ_P0074894 protein_coding protein_coding MGP_C3HHeJ_T0014791.1 MGP_C3HHeJ_G0012895.1 mouse_genomes_project 5 49458900 49459642 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008196.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113577013 113583518 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008197.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113577152 113582726 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008198.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113577159 113578465 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008199.1 MGP_C3HHeJ_G0006666.1 mouse_genomes_project 5 113578022 113601193 + C130026L21Rik lincRNA lincRNA MGP_C3HHeJ_T0014851.1 MGP_C3HHeJ_G0012955.1 mouse_genomes_project 5 76490163 76491237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101216.1 MGP_C3HHeJ_G0039350.1 mouse_genomes_project 5 27316438 27317280 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0070830.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994074 33054159 + MGP_C3HHeJ_P0070830 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070831.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994175 33027011 + MGP_C3HHeJ_P0070831 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070832.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994179 33027011 + MGP_C3HHeJ_P0070832 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070833.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994214 33022743 + Add1 protein_coding processed_transcript MGP_C3HHeJ_T0070834.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994273 33054156 + MGP_C3HHeJ_P0070834 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070835.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994283 33054159 + MGP_C3HHeJ_P0070835 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070836.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 32994452 33054145 + MGP_C3HHeJ_P0070836 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070837.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33017458 33020231 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0070838.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33022459 33052667 + MGP_C3HHeJ_P0070838 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070839.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33036098 33047170 + MGP_C3HHeJ_P0070839 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070840.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33038476 33042302 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0070841.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33038617 33052482 + MGP_C3HHeJ_P0070841 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070842.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33041204 33054159 + MGP_C3HHeJ_P0070842 Add1 protein_coding protein_coding MGP_C3HHeJ_T0070843.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33041699 33052592 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0070844.1 MGP_C3HHeJ_G0029166.1 mouse_genomes_project 5 33041821 33050594 + Add1 protein_coding retained_intron MGP_C3HHeJ_T0072061.1 MGP_C3HHeJ_G0029382.1 mouse_genomes_project 5 88015658 88047714 - MGP_C3HHeJ_P0072061 Ugt2a1 protein_coding protein_coding MGP_C3HHeJ_T0004561.1 MGP_C3HHeJ_G0003947.1 mouse_genomes_project 5 11971981 11992116 - Gm26918 antisense antisense MGP_C3HHeJ_T0004609.1 MGP_C3HHeJ_G0003985.1 mouse_genomes_project 5 42714202 42716274 + Gm16401 antisense antisense MGP_C3HHeJ_T0004610.1 MGP_C3HHeJ_G0003985.1 mouse_genomes_project 5 42714202 42716276 + Gm16401 antisense antisense MGP_C3HHeJ_T0075671.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154418399 154441575 - MGP_C3HHeJ_P0075671 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075672.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154420656 154441742 - MGP_C3HHeJ_P0075672 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075673.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154420957 154441613 - MGP_C3HHeJ_P0075673 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075674.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154421281 154441742 - MGP_C3HHeJ_P0075674 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075675.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154421567 154423286 - Hsph1 protein_coding retained_intron MGP_C3HHeJ_T0075676.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154424005 154425300 - Hsph1 protein_coding retained_intron MGP_C3HHeJ_T0075677.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154424794 154441742 - Hsph1 protein_coding retained_intron MGP_C3HHeJ_T0075678.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154435387 154441780 - MGP_C3HHeJ_P0075678 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075679.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154435843 154441694 - MGP_C3HHeJ_P0075679 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075680.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154437442 154441755 - MGP_C3HHeJ_P0075680 Hsph1 protein_coding protein_coding MGP_C3HHeJ_T0075681.1 MGP_C3HHeJ_G0030101.1 mouse_genomes_project 5 154437501 154439291 - Hsph1 protein_coding processed_transcript MGP_C3HHeJ_T0001421.1 MGP_C3HHeJ_G0001351.1 mouse_genomes_project 5 11696629 11699509 + TEC TEC MGP_C3HHeJ_T0008006.1 MGP_C3HHeJ_G0006525.1 mouse_genomes_project 5 32334340 32337043 + lincRNA lincRNA MGP_C3HHeJ_T0008156.1 MGP_C3HHeJ_G0006640.1 mouse_genomes_project 5 104697253 104698958 + Gm42618 lincRNA lincRNA MGP_C3HHeJ_T0074098.1 MGP_C3HHeJ_G0029789.1 mouse_genomes_project 5 127517795 127532633 - MGP_C3HHeJ_P0074098 Rilpl2 protein_coding protein_coding MGP_C3HHeJ_T0074099.1 MGP_C3HHeJ_G0029789.1 mouse_genomes_project 5 127529559 127532577 - Rilpl2 protein_coding retained_intron MGP_C3HHeJ_T0014948.1 MGP_C3HHeJ_G0013052.1 mouse_genomes_project 5 116292657 116293722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008340.1 MGP_C3HHeJ_G0006758.1 mouse_genomes_project 5 143873851 143881391 + Gm42423 lincRNA lincRNA MGP_C3HHeJ_T0073540.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118300 123142163 + MGP_C3HHeJ_P0073540 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073541.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118367 123142158 + MGP_C3HHeJ_P0073541 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073542.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118384 123142159 + MGP_C3HHeJ_P0073542 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073543.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123118402 123120320 + MGP_C3HHeJ_P0073543 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073544.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123119999 123126871 + MGP_C3HHeJ_P0073544 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073545.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123120274 123141196 + MGP_C3HHeJ_P0073545 Slc8b1 protein_coding protein_coding MGP_C3HHeJ_T0073546.1 MGP_C3HHeJ_G0029700.1 mouse_genomes_project 5 123127898 123129340 + Slc8b1 protein_coding retained_intron MGP_C3HHeJ_T0008233.1 MGP_C3HHeJ_G0006686.1 mouse_genomes_project 5 117668317 117714790 + Gm13832 lincRNA lincRNA MGP_C3HHeJ_T0008234.1 MGP_C3HHeJ_G0006686.1 mouse_genomes_project 5 117668336 117742605 + Gm13832 lincRNA lincRNA MGP_C3HHeJ_T0098149.1 MGP_C3HHeJ_G0036361.1 mouse_genomes_project 5 109083205 109083324 + n-R5s173 rRNA rRNA MGP_C3HHeJ_T0008050.1 MGP_C3HHeJ_G0006556.1 mouse_genomes_project 5 51358924 51359199 - Gm43179 lincRNA lincRNA MGP_C3HHeJ_T0075510.1 MGP_C3HHeJ_G0030069.1 mouse_genomes_project 5 150661228 150663074 - protein_coding retained_intron MGP_C3HHeJ_T0071476.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941142 64946884 + Lias protein_coding retained_intron MGP_C3HHeJ_T0071477.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941162 64946314 + Lias protein_coding retained_intron MGP_C3HHeJ_T0071478.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941163 64948386 + MGP_C3HHeJ_P0071478 Lias protein_coding protein_coding MGP_C3HHeJ_T0071479.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64941227 64959581 + MGP_C3HHeJ_P0071479 Lias protein_coding protein_coding MGP_C3HHeJ_T0071480.1 MGP_C3HHeJ_G0029277.1 mouse_genomes_project 5 64948241 64950615 + Lias protein_coding retained_intron MGP_C3HHeJ_T0014883.1 MGP_C3HHeJ_G0012987.1 mouse_genomes_project 5 91494949 91495263 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074245.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703086 132775267 + MGP_C3HHeJ_P0074245 Sfswap protein_coding protein_coding MGP_C3HHeJ_T0074246.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703105 132773531 + MGP_C3HHeJ_P0074246 Sfswap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074247.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703111 132706509 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074248.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703116 132775264 + Sfswap protein_coding processed_transcript MGP_C3HHeJ_T0074249.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132703314 132706247 + MGP_C3HHeJ_P0074249 Sfswap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074250.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132704259 132704914 + Sfswap protein_coding TEC MGP_C3HHeJ_T0074251.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132705024 132706000 + Sfswap protein_coding processed_transcript MGP_C3HHeJ_T0074252.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132705839 132706754 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074253.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132705961 132758640 + MGP_C3HHeJ_P0074253 Sfswap protein_coding unknown_likely_coding MGP_C3HHeJ_T0074254.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132706206 132714980 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074255.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132745315 132754742 + MGP_C3HHeJ_P0074255 Sfswap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074256.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132752820 132775264 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074257.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132754657 132763379 + Sfswap protein_coding processed_transcript MGP_C3HHeJ_T0074258.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132764038 132775267 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074259.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132764379 132773897 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0074260.1 MGP_C3HHeJ_G0029819.1 mouse_genomes_project 5 132774599 132775267 + Sfswap protein_coding retained_intron MGP_C3HHeJ_T0014825.1 MGP_C3HHeJ_G0012929.1 mouse_genomes_project 5 63744504 63745194 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070640.1 MGP_C3HHeJ_G0029135.1 mouse_genomes_project 5 31043041 31168788 - MGP_C3HHeJ_P0070640 Gm20671 protein_coding protein_coding MGP_C3HHeJ_T0075632.1 MGP_C3HHeJ_G0030094.1 mouse_genomes_project 5 153636822 153744490 - MGP_C3HHeJ_P0075632 Gm42791 protein_coding protein_coding MGP_C3HHeJ_T0075635.1 MGP_C3HHeJ_G0030094.1 mouse_genomes_project 5 153730012 153730627 - Gm42791 protein_coding processed_transcript MGP_C3HHeJ_T0001599.1 MGP_C3HHeJ_G0001524.1 mouse_genomes_project 5 65048394 65049314 + TEC TEC MGP_C3HHeJ_T0004560.1 MGP_C3HHeJ_G0003946.1 mouse_genomes_project 5 11499963 11517349 - Gm4128 antisense antisense MGP_C3HHeJ_T0072527.1 MGP_C3HHeJ_G0029494.1 mouse_genomes_project 5 102983652 102990504 - MGP_C3HHeJ_P0072527 Nkx6-1 protein_coding protein_coding MGP_C3HHeJ_T0014954.1 MGP_C3HHeJ_G0013058.1 mouse_genomes_project 5 117497078 117497441 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074760.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140572305 140581943 + MGP_C3HHeJ_P0074760 Plod3 protein_coding protein_coding MGP_C3HHeJ_T0074761.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140572664 140577384 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074762.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140572762 140578001 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074763.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140575601 140579475 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074764.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140575797 140577384 + Plod3 protein_coding retained_intron MGP_C3HHeJ_T0074765.1 MGP_C3HHeJ_G0029907.1 mouse_genomes_project 5 140576919 140580473 + MGP_C3HHeJ_P0074765 Plod3 protein_coding protein_coding MGP_C3HHeJ_T0070486.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388914 29394576 + MGP_C3HHeJ_P0070486 Snx17 protein_coding protein_coding MGP_C3HHeJ_T0070487.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388929 29391122 + MGP_C3HHeJ_P0070487 Snx17 protein_coding protein_coding MGP_C3HHeJ_T0070488.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388981 29394570 + MGP_C3HHeJ_P0070488 Snx17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070489.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388993 29394575 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070490.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29388993 29392732 + MGP_C3HHeJ_P0070490 Snx17 protein_coding protein_coding MGP_C3HHeJ_T0070491.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29389022 29394576 + MGP_C3HHeJ_P0070491 Snx17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070492.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29389541 29394819 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070493.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29390530 29392110 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070494.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29391060 29392926 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070495.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29391518 29393386 + Snx17 protein_coding retained_intron MGP_C3HHeJ_T0070496.1 MGP_C3HHeJ_G0029114.1 mouse_genomes_project 5 29391726 29393820 + Snx17 protein_coding processed_transcript MGP_C3HHeJ_T0102046.1 MGP_C3HHeJ_G0040011.1 mouse_genomes_project 5 95749738 95750362 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001490.1 MGP_C3HHeJ_G0001417.1 mouse_genomes_project 5 42163739 42165845 + TEC TEC MGP_C3HHeJ_T0074367.1 MGP_C3HHeJ_G0029842.1 mouse_genomes_project 5 134096099 134098061 - MGP_C3HHeJ_P0074367 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0001800.1 MGP_C3HHeJ_G0001723.1 mouse_genomes_project 5 131668922 131670322 + TEC TEC MGP_C3HHeJ_T0001835.1 MGP_C3HHeJ_G0001758.1 mouse_genomes_project 5 136063239 136063527 + TEC TEC MGP_C3HHeJ_T0014949.1 MGP_C3HHeJ_G0013053.1 mouse_genomes_project 5 116439527 116440573 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071659.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69300906 69318589 - MGP_C3HHeJ_P0071659 Gnpda2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071660.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69302799 69320145 - MGP_C3HHeJ_P0071660 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071661.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69302968 69318625 - MGP_C3HHeJ_P0071661 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071662.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69302973 69320051 - Gnpda2 protein_coding retained_intron MGP_C3HHeJ_T0071663.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69303610 69320079 - MGP_C3HHeJ_P0071663 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071664.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69304540 69320098 - MGP_C3HHeJ_P0071664 Gnpda2 protein_coding protein_coding MGP_C3HHeJ_T0071665.1 MGP_C3HHeJ_G0029304.1 mouse_genomes_project 5 69312797 69320094 - MGP_C3HHeJ_P0071665 Gnpda2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001501.1 MGP_C3HHeJ_G0001428.1 mouse_genomes_project 5 43145781 43146684 - TEC TEC MGP_C3HHeJ_T0072570.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105054482 105188431 + Aff1 protein_coding retained_intron MGP_C3HHeJ_T0072571.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105122993 105232192 + MGP_C3HHeJ_P0072571 Aff1 protein_coding protein_coding MGP_C3HHeJ_T0072572.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105123393 105215034 + MGP_C3HHeJ_P0072572 Aff1 protein_coding protein_coding MGP_C3HHeJ_T0072573.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105123402 105232192 + MGP_C3HHeJ_P0072573 Aff1 protein_coding protein_coding MGP_C3HHeJ_T0072574.1 MGP_C3HHeJ_G0029502.1 mouse_genomes_project 5 105156463 105183596 + Aff1 protein_coding retained_intron MGP_C3HHeJ_T0073529.1 MGP_C3HHeJ_G0029696.1 mouse_genomes_project 5 123035867 123045291 + MGP_C3HHeJ_P0073529 Lhx5 protein_coding protein_coding MGP_C3HHeJ_T0007998.1 MGP_C3HHeJ_G0006519.1 mouse_genomes_project 5 28251598 28257050 + Gm4961 lincRNA lincRNA MGP_C3HHeJ_T0075108.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143267938 143280896 - MGP_C3HHeJ_P0075108 Cox19 protein_coding protein_coding MGP_C3HHeJ_T0075109.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143269573 143280840 - Cox19 protein_coding processed_transcript MGP_C3HHeJ_T0075110.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143269891 143271327 - Cox19 protein_coding processed_transcript MGP_C3HHeJ_T0075111.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143269972 143290466 - MGP_C3HHeJ_P0075111 Cox19 protein_coding protein_coding MGP_C3HHeJ_T0075112.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143270061 143280788 - MGP_C3HHeJ_P0075112 Cox19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075113.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143276207 143280823 - Cox19 protein_coding retained_intron MGP_C3HHeJ_T0075114.1 MGP_C3HHeJ_G0029977.1 mouse_genomes_project 5 143276376 143280828 - Cox19 protein_coding retained_intron MGP_C3HHeJ_T0008095.1 MGP_C3HHeJ_G0006592.1 mouse_genomes_project 5 76081080 76094552 + Gm32780 lincRNA lincRNA MGP_C3HHeJ_T0001725.1 MGP_C3HHeJ_G0001649.1 mouse_genomes_project 5 113410662 113412785 + TEC TEC MGP_C3HHeJ_T0001628.1 MGP_C3HHeJ_G0001553.1 mouse_genomes_project 5 67070503 67072914 + TEC TEC MGP_C3HHeJ_T0008393.1 MGP_C3HHeJ_G0006798.1 mouse_genomes_project 5 155433072 155433338 - Gm43690 lincRNA lincRNA MGP_C3HHeJ_T0071468.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937955 64941034 - MGP_C3HHeJ_P0071468 protein_coding unknown_likely_coding MGP_C3HHeJ_T0071469.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64938513 - protein_coding retained_intron MGP_C3HHeJ_T0071470.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64940604 - MGP_C3HHeJ_P0071470 protein_coding protein_coding MGP_C3HHeJ_T0071471.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64940432 - MGP_C3HHeJ_P0071471 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071472.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937962 64940998 - MGP_C3HHeJ_P0071472 protein_coding protein_coding MGP_C3HHeJ_T0071473.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64937963 64940997 - protein_coding retained_intron MGP_C3HHeJ_T0071474.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64938275 64940980 - protein_coding retained_intron MGP_C3HHeJ_T0071475.1 MGP_C3HHeJ_G0029276.1 mouse_genomes_project 5 64938515 64940590 - protein_coding retained_intron MGP_C3HHeJ_T0073051.1 MGP_C3HHeJ_G0029606.1 mouse_genomes_project 5 114504193 114506523 + MGP_C3HHeJ_P0073051 Gm6588 protein_coding protein_coding MGP_C3HHeJ_T0074264.1 MGP_C3HHeJ_G0029822.1 mouse_genomes_project 5 132893764 132903616 - Sept14 protein_coding processed_transcript MGP_C3HHeJ_T0074265.1 MGP_C3HHeJ_G0029822.1 mouse_genomes_project 5 132893775 132918517 - MGP_C3HHeJ_P0074265 Sept14 protein_coding protein_coding MGP_C3HHeJ_T0074266.1 MGP_C3HHeJ_G0029822.1 mouse_genomes_project 5 132893812 132920913 - MGP_C3HHeJ_P0074266 Sept14 protein_coding protein_coding MGP_C3HHeJ_T0004819.1 MGP_C3HHeJ_G0004134.1 mouse_genomes_project 5 153693726 153696659 - Gm15410 antisense antisense MGP_C3HHeJ_T0069977.1 MGP_C3HHeJ_G0029020.1 mouse_genomes_project 5 19518753 19538115 + MGP_C3HHeJ_P0069977 Psmc2 protein_coding protein_coding MGP_C3HHeJ_T0069978.1 MGP_C3HHeJ_G0029020.1 mouse_genomes_project 5 19527837 19531500 + Psmc2 protein_coding retained_intron MGP_C3HHeJ_T0073675.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124558835 124600067 + Atxn2 protein_coding processed_transcript MGP_C3HHeJ_T0073676.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124559028 124673741 + MGP_C3HHeJ_P0073676 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073677.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124560352 124627748 + Atxn2 protein_coding processed_transcript MGP_C3HHeJ_T0073678.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124600079 124673740 + MGP_C3HHeJ_P0073678 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073679.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124632889 124652812 + MGP_C3HHeJ_P0073679 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073680.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124635797 124640342 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073681.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124640926 124673511 + MGP_C3HHeJ_P0073681 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073682.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124642093 124653223 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073683.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124655159 124662226 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073684.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124660099 124661056 + Atxn2 protein_coding processed_transcript MGP_C3HHeJ_T0073685.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124660536 124669742 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073686.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124660901 124667847 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073687.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124661020 124673422 + MGP_C3HHeJ_P0073687 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0073688.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124664369 124673525 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073689.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124665035 124672246 + MGP_C3HHeJ_P0073689 Atxn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073690.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124669454 124670324 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073691.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124669755 124670721 + Atxn2 protein_coding retained_intron MGP_C3HHeJ_T0073692.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124670250 124675284 + MGP_C3HHeJ_P0073692 Atxn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073693.1 MGP_C3HHeJ_G0029730.1 mouse_genomes_project 5 124670297 124673689 + MGP_C3HHeJ_P0073693 Atxn2 protein_coding protein_coding MGP_C3HHeJ_T0102043.1 MGP_C3HHeJ_G0040008.1 mouse_genomes_project 5 87964794 87966454 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015035.1 MGP_C3HHeJ_G0013139.1 mouse_genomes_project 5 154822068 154823614 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074742.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140484950 140490705 + MGP_C3HHeJ_P0074742 Ift22 protein_coding protein_coding MGP_C3HHeJ_T0074743.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140484954 140489855 + MGP_C3HHeJ_P0074743 Ift22 protein_coding protein_coding MGP_C3HHeJ_T0074744.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140484984 140490706 + MGP_C3HHeJ_P0074744 Ift22 protein_coding protein_coding MGP_C3HHeJ_T0074745.1 MGP_C3HHeJ_G0029903.1 mouse_genomes_project 5 140488616 140489190 + Ift22 protein_coding retained_intron MGP_C3HHeJ_T0073972.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126736538 126750849 - MGP_C3HHeJ_P0073972 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073973.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126736844 126750896 - Rsrc2 protein_coding processed_transcript MGP_C3HHeJ_T0073974.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737127 126757515 - MGP_C3HHeJ_P0073974 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073975.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737138 126757481 - MGP_C3HHeJ_P0073975 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073976.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737204 126750921 - MGP_C3HHeJ_P0073976 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073977.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737204 126751708 - MGP_C3HHeJ_P0073977 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073978.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737204 126751708 - MGP_C3HHeJ_P0073978 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073979.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126737367 126741812 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073980.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126738649 126757487 - MGP_C3HHeJ_P0073980 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073981.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126741486 126757513 - MGP_C3HHeJ_P0073981 Rsrc2 protein_coding protein_coding MGP_C3HHeJ_T0073982.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126741720 126757482 - MGP_C3HHeJ_P0073982 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073983.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126741720 126757483 - MGP_C3HHeJ_P0073983 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073984.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126742951 126753632 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073985.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126743006 126749844 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073986.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126744732 126757472 - MGP_C3HHeJ_P0073986 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073987.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126744779 126757513 - MGP_C3HHeJ_P0073987 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073988.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126747786 126757470 - MGP_C3HHeJ_P0073988 Rsrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073989.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126748918 126757468 - Rsrc2 protein_coding processed_transcript MGP_C3HHeJ_T0073990.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126750056 126757482 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073991.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126750056 126757482 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073992.1 MGP_C3HHeJ_G0029771.1 mouse_genomes_project 5 126751631 126753293 - Rsrc2 protein_coding retained_intron MGP_C3HHeJ_T0073771.1 MGP_C3HHeJ_G0029742.1 mouse_genomes_project 5 125281191 125293586 - MGP_C3HHeJ_P0073771 Fam216a protein_coding protein_coding MGP_C3HHeJ_T0001721.1 MGP_C3HHeJ_G0001645.1 mouse_genomes_project 5 113025586 113026320 + TEC TEC MGP_C3HHeJ_T0008024.1 MGP_C3HHeJ_G0006533.1 mouse_genomes_project 5 36489247 36491627 + Gm42505 lincRNA lincRNA MGP_C3HHeJ_T0072657.1 MGP_C3HHeJ_G0029527.1 mouse_genomes_project 5 108098518 108104137 - MGP_C3HHeJ_P0072657 Barhl2 protein_coding protein_coding MGP_C3HHeJ_T0001685.1 MGP_C3HHeJ_G0001609.1 mouse_genomes_project 5 97928092 97930238 + TEC TEC MGP_C3HHeJ_T0017946.1 MGP_C3HHeJ_G0015368.1 mouse_genomes_project 5 108208475 108347166 - Gm28039 processed_transcript processed_transcript MGP_C3HHeJ_T0014756.1 MGP_C3HHeJ_G0012860.1 mouse_genomes_project 5 31177739 31178025 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074230.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132160271 132184281 - MGP_C3HHeJ_P0074230 Stx2 protein_coding protein_coding MGP_C3HHeJ_T0074231.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132160277 132184242 - MGP_C3HHeJ_P0074231 Stx2 protein_coding protein_coding MGP_C3HHeJ_T0074232.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132161869 132164873 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0074233.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132164379 132165564 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0074234.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132164622 132184130 - Stx2 protein_coding processed_transcript MGP_C3HHeJ_T0074235.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132166355 132184256 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0074236.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132169209 132184151 - MGP_C3HHeJ_P0074236 Stx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074237.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132169223 132175342 - MGP_C3HHeJ_P0074237 Stx2 protein_coding protein_coding MGP_C3HHeJ_T0074238.1 MGP_C3HHeJ_G0029816.1 mouse_genomes_project 5 132174794 132184253 - Stx2 protein_coding retained_intron MGP_C3HHeJ_T0010576.1 MGP_C3HHeJ_G0008709.1 mouse_genomes_project 5 561444 561512 + Gm22926 miRNA miRNA MGP_C3HHeJ_T0072001.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84498553 84879067 - MGP_C3HHeJ_P0072001 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072002.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84501583 84878952 - MGP_C3HHeJ_P0072002 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072003.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84501583 84878952 - MGP_C3HHeJ_P0072003 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072004.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84509260 84878952 - MGP_C3HHeJ_P0072004 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072005.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84509260 84878952 - MGP_C3HHeJ_P0072005 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072006.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84509260 84879505 - MGP_C3HHeJ_P0072006 Epha5 protein_coding protein_coding MGP_C3HHeJ_T0072007.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84559363 84879067 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072008.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84610289 84879067 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072009.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84697555 84879528 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072010.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84793549 84879528 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0072011.1 MGP_C3HHeJ_G0029362.1 mouse_genomes_project 5 84820349 84824028 - Epha5 protein_coding retained_intron MGP_C3HHeJ_T0069896.1 MGP_C3HHeJ_G0029003.1 mouse_genomes_project 5 15529509 15588440 + MGP_C3HHeJ_P0069896 Gnat3 protein_coding protein_coding MGP_C3HHeJ_T0072178.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90953407 91094544 - MGP_C3HHeJ_P0072178 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072179.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90954060 90958705 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072180.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90954706 91094190 - MGP_C3HHeJ_P0072180 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072181.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90954982 91066641 - MGP_C3HHeJ_P0072181 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072182.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90955523 91094009 - MGP_C3HHeJ_P0072182 Ankrd17 protein_coding protein_coding MGP_C3HHeJ_T0072183.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90962662 90965937 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072184.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90980485 91030861 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072185.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90981129 90990230 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072186.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90986913 90993441 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072187.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 90993975 91002261 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072188.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 91003110 91005287 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072189.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 91019013 91021855 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0072190.1 MGP_C3HHeJ_G0029418.1 mouse_genomes_project 5 91092055 91094147 - Ankrd17 protein_coding retained_intron MGP_C3HHeJ_T0004567.1 MGP_C3HHeJ_G0003951.1 mouse_genomes_project 5 18623472 18628884 + A630072M18Rik antisense antisense MGP_C3HHeJ_T0008136.1 MGP_C3HHeJ_G0006626.1 mouse_genomes_project 5 100470258 100475455 + Gm43252 lincRNA lincRNA MGP_C3HHeJ_T0008176.1 MGP_C3HHeJ_G0006654.1 mouse_genomes_project 5 108720154 108727290 + Gm43419 lincRNA lincRNA MGP_C3HHeJ_T0008399.1 MGP_C3HHeJ_G0006802.1 mouse_genomes_project 5 155739110 155759594 - Gm43298 lincRNA lincRNA MGP_C3HHeJ_T0008277.1 MGP_C3HHeJ_G0006716.1 mouse_genomes_project 5 126107029 126116267 + lincRNA lincRNA MGP_C3HHeJ_T0073630.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124233322 124312300 + MGP_C3HHeJ_P0073630 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073631.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234004 124281549 + MGP_C3HHeJ_P0073631 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073632.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234004 124280587 + MGP_C3HHeJ_P0073632 Tmem116 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073633.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234054 124268223 + MGP_C3HHeJ_P0073633 Tmem116 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073634.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124234135 124268223 + Tmem116 protein_coding processed_transcript MGP_C3HHeJ_T0073635.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124239597 124280419 + MGP_C3HHeJ_P0073635 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073636.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124244437 124281556 + MGP_C3HHeJ_P0073636 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073637.1 MGP_C3HHeJ_G0029722.1 mouse_genomes_project 5 124244437 124281529 + MGP_C3HHeJ_P0073637 Tmem116 protein_coding protein_coding MGP_C3HHeJ_T0073178.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116492313 116571865 + MGP_C3HHeJ_P0073178 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073179.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116521679 116571644 + MGP_C3HHeJ_P0073179 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073180.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116521679 116573206 + MGP_C3HHeJ_P0073180 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073181.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565441 116573206 + Myo1h protein_coding retained_intron MGP_C3HHeJ_T0073182.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + Myo1h protein_coding retained_intron MGP_C3HHeJ_T0073183.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + MGP_C3HHeJ_P0073183 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073184.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + MGP_C3HHeJ_P0073184 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073185.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116565489 116571950 + MGP_C3HHeJ_P0073185 Myo1h protein_coding protein_coding MGP_C3HHeJ_T0073186.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116566032 116568362 + Myo1h protein_coding retained_intron MGP_C3HHeJ_T0073187.1 MGP_C3HHeJ_G0029631.1 mouse_genomes_project 5 116572044 116573987 + Myo1h protein_coding processed_transcript MGP_C3HHeJ_T0014848.1 MGP_C3HHeJ_G0012952.1 mouse_genomes_project 5 76099129 76099411 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099442.1 MGP_C3HHeJ_G0037636.1 mouse_genomes_project 5 69106092 69106199 - Gm23932 snRNA snRNA MGP_C3HHeJ_T0075757.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537363 156545850 - MGP_C3HHeJ_P0075757 Rfc3 protein_coding protein_coding MGP_C3HHeJ_T0075758.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537426 156538739 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075759.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537428 156539370 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075760.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156537431 156545810 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075761.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156539023 156545816 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075762.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156541574 156545803 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0075763.1 MGP_C3HHeJ_G0030114.1 mouse_genomes_project 5 156544174 156545835 - Rfc3 protein_coding retained_intron MGP_C3HHeJ_T0008356.1 MGP_C3HHeJ_G0006771.1 mouse_genomes_project 5 151282586 151283461 + 4930573C15Rik lincRNA lincRNA MGP_C3HHeJ_T0008178.1 MGP_C3HHeJ_G0006656.1 mouse_genomes_project 5 109386688 109391954 - 4930428O21Rik lincRNA lincRNA MGP_C3HHeJ_T0011504.1 MGP_C3HHeJ_G0009637.1 mouse_genomes_project 5 101699646 101699715 + Gm27997 misc_RNA misc_RNA MGP_C3HHeJ_T0008126.1 MGP_C3HHeJ_G0006619.1 mouse_genomes_project 5 98140257 98141416 - Gm9484 lincRNA lincRNA MGP_C3HHeJ_T0072685.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108630593 108651885 + MGP_C3HHeJ_P0072685 Cdc7 protein_coding protein_coding MGP_C3HHeJ_T0072686.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108630593 108651886 + MGP_C3HHeJ_P0072686 Cdc7 protein_coding protein_coding MGP_C3HHeJ_T0072687.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108630652 108651886 + MGP_C3HHeJ_P0072687 Cdc7 protein_coding protein_coding MGP_C3HHeJ_T0072688.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108630663 108651886 + Cdc7 protein_coding retained_intron MGP_C3HHeJ_T0072689.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108630832 108651885 + MGP_C3HHeJ_P0072689 Cdc7 protein_coding protein_coding MGP_C3HHeJ_T0072690.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108631289 108650809 + MGP_C3HHeJ_P0072690 Cdc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072691.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108640809 108641456 + Cdc7 protein_coding processed_transcript MGP_C3HHeJ_T0072692.1 MGP_C3HHeJ_G0029531.1 mouse_genomes_project 5 108641501 108645584 + Cdc7 protein_coding retained_intron MGP_C3HHeJ_T0008051.1 MGP_C3HHeJ_G0006557.1 mouse_genomes_project 5 51632074 51643542 - 8030423F21Rik lincRNA lincRNA MGP_C3HHeJ_T0071003.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35087380 35155435 - MGP_C3HHeJ_P0071003 D5Ertd579e protein_coding protein_coding MGP_C3HHeJ_T0071004.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35089147 35100618 - MGP_C3HHeJ_P0071004 D5Ertd579e protein_coding protein_coding MGP_C3HHeJ_T0071005.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35102843 35108144 - D5Ertd579e protein_coding processed_transcript MGP_C3HHeJ_T0071006.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35104753 35155459 - D5Ertd579e protein_coding retained_intron MGP_C3HHeJ_T0071007.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35113952 35155435 - D5Ertd579e protein_coding retained_intron MGP_C3HHeJ_T0071008.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35129291 35155522 - MGP_C3HHeJ_P0071008 D5Ertd579e protein_coding protein_coding MGP_C3HHeJ_T0071009.1 MGP_C3HHeJ_G0029191.1 mouse_genomes_project 5 35147878 35155468 - D5Ertd579e protein_coding retained_intron MGP_C3HHeJ_T0075059.1 MGP_C3HHeJ_G0029970.1 mouse_genomes_project 5 142727080 142729087 + Gm5294 protein_coding unprocessed_pseudogene MGP_C3HHeJ_T0075060.1 MGP_C3HHeJ_G0029970.1 mouse_genomes_project 5 142727790 142729330 + MGP_C3HHeJ_P0075060 Gm5294 protein_coding protein_coding MGP_C3HHeJ_T0099484.1 MGP_C3HHeJ_G0037678.1 mouse_genomes_project 5 126626345 126626492 + Gm24840 snRNA snRNA MGP_C3HHeJ_T0070314.1 MGP_C3HHeJ_G0029086.1 mouse_genomes_project 5 28466401 28509546 + MGP_C3HHeJ_P0070314 Drc1 protein_coding protein_coding MGP_C3HHeJ_T0070315.1 MGP_C3HHeJ_G0029086.1 mouse_genomes_project 5 28477924 28478891 + Drc1 protein_coding processed_transcript MGP_C3HHeJ_T0070316.1 MGP_C3HHeJ_G0029086.1 mouse_genomes_project 5 28485933 28498751 + Drc1 protein_coding processed_transcript MGP_C3HHeJ_T0070317.1 MGP_C3HHeJ_G0029086.1 mouse_genomes_project 5 28496062 28499340 + Drc1 protein_coding processed_transcript MGP_C3HHeJ_T0074152.1 MGP_C3HHeJ_G0029800.1 mouse_genomes_project 5 128018568 128027857 + MGP_C3HHeJ_P0074152 Fam101a protein_coding protein_coding MGP_C3HHeJ_T0074153.1 MGP_C3HHeJ_G0029800.1 mouse_genomes_project 5 128018822 128027856 + MGP_C3HHeJ_P0074153 Fam101a protein_coding protein_coding MGP_C3HHeJ_T0074154.1 MGP_C3HHeJ_G0029800.1 mouse_genomes_project 5 128025424 128026804 + Fam101a protein_coding processed_transcript MGP_C3HHeJ_T0014966.1 MGP_C3HHeJ_G0013070.1 mouse_genomes_project 5 125212227 125212845 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001720.1 MGP_C3HHeJ_G0001644.1 mouse_genomes_project 5 112975379 112975932 + TEC TEC MGP_C3HHeJ_T0001413.1 MGP_C3HHeJ_G0001343.1 mouse_genomes_project 5 9886514 9890135 + TEC TEC MGP_C3HHeJ_T0075560.1 MGP_C3HHeJ_G0030081.1 mouse_genomes_project 5 151820352 151822605 + MGP_C3HHeJ_P0075560 Gsx1 protein_coding protein_coding MGP_C3HHeJ_T0071782.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73420143 73505865 + MGP_C3HHeJ_P0071782 Dcun1d4 protein_coding protein_coding MGP_C3HHeJ_T0071783.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73423588 73502352 + Dcun1d4 protein_coding processed_transcript MGP_C3HHeJ_T0071784.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73430153 73505865 + MGP_C3HHeJ_P0071784 Dcun1d4 protein_coding protein_coding MGP_C3HHeJ_T0071785.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73430195 73486894 + MGP_C3HHeJ_P0071785 Dcun1d4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071786.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73430251 73472561 + MGP_C3HHeJ_P0071786 Dcun1d4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071787.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73430253 73505858 + MGP_C3HHeJ_P0071787 Dcun1d4 protein_coding protein_coding MGP_C3HHeJ_T0071788.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73432731 73461019 + Dcun1d4 protein_coding processed_transcript MGP_C3HHeJ_T0071789.1 MGP_C3HHeJ_G0029326.1 mouse_genomes_project 5 73450964 73475775 + MGP_C3HHeJ_P0071789 Dcun1d4 protein_coding protein_coding MGP_C3HHeJ_T0074793.1 MGP_C3HHeJ_G0029915.1 mouse_genomes_project 5 140904420 140905457 + MGP_C3HHeJ_P0074793 Ufsp1 protein_coding protein_coding MGP_C3HHeJ_T0010577.1 MGP_C3HHeJ_G0008710.1 mouse_genomes_project 5 1846658 1848507 - miRNA miRNA MGP_C3HHeJ_T0075656.1 MGP_C3HHeJ_G0030098.1 mouse_genomes_project 5 154189772 154200971 + Medag protein_coding retained_intron MGP_C3HHeJ_T0075657.1 MGP_C3HHeJ_G0030098.1 mouse_genomes_project 5 154189978 154208778 + MGP_C3HHeJ_P0075657 Medag protein_coding protein_coding MGP_C3HHeJ_T0099421.1 MGP_C3HHeJ_G0037615.1 mouse_genomes_project 5 17899111 17899211 + Gm22755 snRNA snRNA MGP_C3HHeJ_T0004655.1 MGP_C3HHeJ_G0004023.1 mouse_genomes_project 5 88477904 88546196 - 1700066N21Rik antisense antisense MGP_C3HHeJ_T0001460.1 MGP_C3HHeJ_G0001388.1 mouse_genomes_project 5 30182816 30183511 + TEC TEC MGP_C3HHeJ_T0073805.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125582235 125625528 + MGP_C3HHeJ_P0073805 P2rx7 protein_coding protein_coding MGP_C3HHeJ_T0073806.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125582235 125625520 + MGP_C3HHeJ_P0073806 P2rx7 protein_coding protein_coding MGP_C3HHeJ_T0073807.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125582263 125632662 + MGP_C3HHeJ_P0073807 P2rx7 protein_coding protein_coding MGP_C3HHeJ_T0073808.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125582333 125593416 + MGP_C3HHeJ_P0073808 P2rx7 protein_coding protein_coding MGP_C3HHeJ_T0073809.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125582489 125586119 + P2rx7 protein_coding processed_transcript MGP_C3HHeJ_T0073810.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125588577 125622604 + P2rx7 protein_coding processed_transcript MGP_C3HHeJ_T0073811.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125623172 125624755 + P2rx7 protein_coding processed_transcript MGP_C3HHeJ_T0073812.1 MGP_C3HHeJ_G0029748.1 mouse_genomes_project 5 125623412 125625515 + P2rx7 protein_coding retained_intron MGP_C3HHeJ_T0010636.1 MGP_C3HHeJ_G0008769.1 mouse_genomes_project 5 139219137 139219221 - Mir7034 miRNA miRNA MGP_C3HHeJ_T0001487.1 MGP_C3HHeJ_G0001414.1 mouse_genomes_project 5 41841835 41843402 + TEC TEC MGP_C3HHeJ_T0008246.1 MGP_C3HHeJ_G0006696.1 mouse_genomes_project 5 119826017 119831066 + Gm15728 lincRNA lincRNA MGP_C3HHeJ_T0008247.1 MGP_C3HHeJ_G0006696.1 mouse_genomes_project 5 119826093 119827463 + Gm15728 lincRNA lincRNA MGP_C3HHeJ_T0072065.1 MGP_C3HHeJ_G0029385.1 mouse_genomes_project 5 88073092 88099824 - MGP_C3HHeJ_P0072065 Sult1b1 protein_coding protein_coding MGP_C3HHeJ_T0072066.1 MGP_C3HHeJ_G0029385.1 mouse_genomes_project 5 88073119 88097839 - MGP_C3HHeJ_P0072066 Sult1b1 protein_coding protein_coding MGP_C3HHeJ_T0072067.1 MGP_C3HHeJ_G0029385.1 mouse_genomes_project 5 88074442 88096763 - MGP_C3HHeJ_P0072067 Sult1b1 protein_coding protein_coding MGP_C3HHeJ_T0001751.1 MGP_C3HHeJ_G0001675.1 mouse_genomes_project 5 120501213 120502135 - TEC TEC MGP_C3HHeJ_T0069999.1 MGP_C3HHeJ_G0029023.1 mouse_genomes_project 5 20253031 20311840 - Orc5 protein_coding retained_intron MGP_C3HHeJ_T0070000.1 MGP_C3HHeJ_G0029023.1 mouse_genomes_project 5 20253035 20311911 - MGP_C3HHeJ_P0070000 Orc5 protein_coding protein_coding MGP_C3HHeJ_T0070001.1 MGP_C3HHeJ_G0029023.1 mouse_genomes_project 5 20278791 20282982 - Orc5 protein_coding retained_intron MGP_C3HHeJ_T0070002.1 MGP_C3HHeJ_G0029023.1 mouse_genomes_project 5 20283831 20311054 - MGP_C3HHeJ_P0070002 Orc5 protein_coding protein_coding MGP_C3HHeJ_T0070003.1 MGP_C3HHeJ_G0029023.1 mouse_genomes_project 5 20283866 20311911 - Orc5 protein_coding processed_transcript MGP_C3HHeJ_T0070004.1 MGP_C3HHeJ_G0029023.1 mouse_genomes_project 5 20307933 20311965 - Orc5 protein_coding processed_transcript MGP_C3HHeJ_T0073312.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117546961 117577476 - MGP_C3HHeJ_P0073312 Rnf10 protein_coding protein_coding MGP_C3HHeJ_T0073313.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117547319 117577473 - MGP_C3HHeJ_P0073313 Rnf10 protein_coding protein_coding MGP_C3HHeJ_T0073314.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117547319 117577470 - MGP_C3HHeJ_P0073314 Rnf10 protein_coding protein_coding MGP_C3HHeJ_T0073315.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117547324 117548265 - Rnf10 protein_coding retained_intron MGP_C3HHeJ_T0073316.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117547328 117576888 - MGP_C3HHeJ_P0073316 Rnf10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073317.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117549267 117551651 - Rnf10 protein_coding retained_intron MGP_C3HHeJ_T0073318.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117554270 117555065 - Rnf10 protein_coding processed_transcript MGP_C3HHeJ_T0073319.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117556873 117560414 - Rnf10 protein_coding retained_intron MGP_C3HHeJ_T0073320.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117556894 117565013 - Rnf10 protein_coding processed_transcript MGP_C3HHeJ_T0073321.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117561007 117562679 - Rnf10 protein_coding retained_intron MGP_C3HHeJ_T0073322.1 MGP_C3HHeJ_G0029657.1 mouse_genomes_project 5 117575198 117577473 - Rnf10 protein_coding retained_intron MGP_C3HHeJ_T0014678.1 MGP_C3HHeJ_G0012782.1 mouse_genomes_project 5 6965687 6966651 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004820.1 MGP_C3HHeJ_G0004135.1 mouse_genomes_project 5 154063841 154068958 - Gm19719 antisense antisense MGP_C3HHeJ_T0001852.1 MGP_C3HHeJ_G0001774.1 mouse_genomes_project 5 142625497 142626288 + TEC TEC MGP_C3HHeJ_T0073289.1 MGP_C3HHeJ_G0029651.1 mouse_genomes_project 5 117387397 117388004 - MGP_C3HHeJ_P0073289 Gm10401 protein_coding protein_coding MGP_C3HHeJ_T0001542.1 MGP_C3HHeJ_G0001468.1 mouse_genomes_project 5 48032685 48036840 - TEC TEC MGP_C3HHeJ_T0069863.1 MGP_C3HHeJ_G0028998.1 mouse_genomes_project 5 11966226 12325987 + MGP_C3HHeJ_P0069863 Pclo protein_coding protein_coding MGP_C3HHeJ_T0069864.1 MGP_C3HHeJ_G0028998.1 mouse_genomes_project 5 11966226 12255488 + MGP_C3HHeJ_P0069864 Pclo protein_coding protein_coding MGP_C3HHeJ_T0069865.1 MGP_C3HHeJ_G0028998.1 mouse_genomes_project 5 11966301 12320661 + Pclo protein_coding retained_intron MGP_C3HHeJ_T0069866.1 MGP_C3HHeJ_G0028998.1 mouse_genomes_project 5 12136146 12255499 + MGP_C3HHeJ_P0069866 Pclo protein_coding protein_coding MGP_C3HHeJ_T0073200.1 MGP_C3HHeJ_G0029634.1 mouse_genomes_project 5 116642843 116655533 - MGP_C3HHeJ_P0073200 Mmab protein_coding protein_coding MGP_C3HHeJ_T0073201.1 MGP_C3HHeJ_G0029634.1 mouse_genomes_project 5 116645009 116655494 - MGP_C3HHeJ_P0073201 Mmab protein_coding protein_coding MGP_C3HHeJ_T0073202.1 MGP_C3HHeJ_G0029634.1 mouse_genomes_project 5 116646437 116655465 - MGP_C3HHeJ_P0073202 Mmab protein_coding protein_coding MGP_C3HHeJ_T0069748.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5171641 5195934 + MGP_C3HHeJ_P0069748 Sri protein_coding protein_coding MGP_C3HHeJ_T0069749.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5182089 5195706 + MGP_C3HHeJ_P0069749 Sri protein_coding protein_coding MGP_C3HHeJ_T0069750.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5182120 5183418 + Sri protein_coding retained_intron MGP_C3HHeJ_T0069751.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5182124 5185284 + Sri protein_coding retained_intron MGP_C3HHeJ_T0069752.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5182170 5191184 + Sri protein_coding retained_intron MGP_C3HHeJ_T0069753.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5184904 5194307 + Sri protein_coding retained_intron MGP_C3HHeJ_T0069754.1 MGP_C3HHeJ_G0028981.1 mouse_genomes_project 5 5187847 5189053 + Sri protein_coding retained_intron MGP_C3HHeJ_T0001439.1 MGP_C3HHeJ_G0001369.1 mouse_genomes_project 5 21683887 21684771 + TEC TEC MGP_C3HHeJ_T0008069.1 MGP_C3HHeJ_G0006572.1 mouse_genomes_project 5 64085022 64101882 - Gm3716 lincRNA lincRNA MGP_C3HHeJ_T0008070.1 MGP_C3HHeJ_G0006572.1 mouse_genomes_project 5 64086393 64094318 - Gm3716 lincRNA lincRNA MGP_C3HHeJ_T0071842.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75158917 75190671 + MGP_C3HHeJ_P0071842 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0071843.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75158931 75205393 + MGP_C3HHeJ_P0071843 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0071844.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75158977 75182321 + MGP_C3HHeJ_P0071844 Pdgfra protein_coding non_stop_decay MGP_C3HHeJ_T0071845.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75159555 75191284 + MGP_C3HHeJ_P0071845 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0071846.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75160207 75169072 + Pdgfra protein_coding retained_intron MGP_C3HHeJ_T0071847.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75161690 75170102 + MGP_C3HHeJ_P0071847 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0071848.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75162458 75205379 + MGP_C3HHeJ_P0071848 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0071849.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75163401 75172903 + MGP_C3HHeJ_P0071849 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0071850.1 MGP_C3HHeJ_G0029337.1 mouse_genomes_project 5 75168185 75174280 + MGP_C3HHeJ_P0071850 Pdgfra protein_coding protein_coding MGP_C3HHeJ_T0100729.1 MGP_C3HHeJ_G0038923.1 mouse_genomes_project 5 133007201 133007336 + Gm23245 snoRNA snoRNA MGP_C3HHeJ_T0100725.1 MGP_C3HHeJ_G0038919.1 mouse_genomes_project 5 112284025 112284177 + Gm26277 snoRNA snoRNA MGP_C3HHeJ_T0001702.1 MGP_C3HHeJ_G0001626.1 mouse_genomes_project 5 104321336 104323816 - TEC TEC MGP_C3HHeJ_T0073056.1 MGP_C3HHeJ_G0029608.1 mouse_genomes_project 5 114982832 115093660 - MGP_C3HHeJ_P0073056 Adrbk2 protein_coding protein_coding MGP_C3HHeJ_T0073057.1 MGP_C3HHeJ_G0029608.1 mouse_genomes_project 5 114984948 115093660 - MGP_C3HHeJ_P0073057 Adrbk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073058.1 MGP_C3HHeJ_G0029608.1 mouse_genomes_project 5 114988467 114996733 - Adrbk2 protein_coding retained_intron MGP_C3HHeJ_T0073059.1 MGP_C3HHeJ_G0029608.1 mouse_genomes_project 5 114990083 115093937 - MGP_C3HHeJ_P0073059 Adrbk2 protein_coding protein_coding MGP_C3HHeJ_T0073060.1 MGP_C3HHeJ_G0029608.1 mouse_genomes_project 5 114992415 114998172 - Adrbk2 protein_coding retained_intron MGP_C3HHeJ_T0073061.1 MGP_C3HHeJ_G0029608.1 mouse_genomes_project 5 115034900 115093649 - MGP_C3HHeJ_P0073061 Adrbk2 protein_coding protein_coding MGP_C3HHeJ_T0072697.1 MGP_C3HHeJ_G0029533.1 mouse_genomes_project 5 109008066 109068989 + MGP_C3HHeJ_P0072697 Brdt protein_coding protein_coding MGP_C3HHeJ_T0072698.1 MGP_C3HHeJ_G0029533.1 mouse_genomes_project 5 109008082 109027638 + MGP_C3HHeJ_P0072698 Brdt protein_coding protein_coding MGP_C3HHeJ_T0072699.1 MGP_C3HHeJ_G0029533.1 mouse_genomes_project 5 109008099 109018989 + Brdt protein_coding processed_transcript MGP_C3HHeJ_T0072700.1 MGP_C3HHeJ_G0029533.1 mouse_genomes_project 5 109047073 109068400 + Brdt protein_coding processed_transcript MGP_C3HHeJ_T0015032.1 MGP_C3HHeJ_G0013136.1 mouse_genomes_project 5 153315480 153315658 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073580.1 MGP_C3HHeJ_G0029709.1 mouse_genomes_project 5 123383675 123410332 - MGP_C3HHeJ_P0073580 Oas3 protein_coding protein_coding MGP_C3HHeJ_T0073581.1 MGP_C3HHeJ_G0029709.1 mouse_genomes_project 5 123385679 123387723 - MGP_C3HHeJ_P0073581 Oas3 protein_coding protein_coding MGP_C3HHeJ_T0073582.1 MGP_C3HHeJ_G0029709.1 mouse_genomes_project 5 123386862 123389119 - Oas3 protein_coding retained_intron MGP_C3HHeJ_T0073583.1 MGP_C3HHeJ_G0029709.1 mouse_genomes_project 5 123396619 123410311 - Oas3 protein_coding retained_intron MGP_C3HHeJ_T0001848.1 MGP_C3HHeJ_G0001770.1 mouse_genomes_project 5 139886607 139890965 - TEC TEC MGP_C3HHeJ_T0073454.1 MGP_C3HHeJ_G0029681.1 mouse_genomes_project 5 119749306 119791626 + MGP_C3HHeJ_P0073454 Vsig10 protein_coding protein_coding MGP_C3HHeJ_T0073455.1 MGP_C3HHeJ_G0029681.1 mouse_genomes_project 5 119749515 119789732 + MGP_C3HHeJ_P0073455 Vsig10 protein_coding protein_coding MGP_C3HHeJ_T0073456.1 MGP_C3HHeJ_G0029681.1 mouse_genomes_project 5 119749541 119775647 + Vsig10 protein_coding retained_intron MGP_C3HHeJ_T0073457.1 MGP_C3HHeJ_G0029681.1 mouse_genomes_project 5 119749584 119755424 + Vsig10 protein_coding retained_intron MGP_C3HHeJ_T0073458.1 MGP_C3HHeJ_G0029681.1 mouse_genomes_project 5 119753869 119791618 + Vsig10 protein_coding processed_transcript MGP_C3HHeJ_T0073459.1 MGP_C3HHeJ_G0029681.1 mouse_genomes_project 5 119786530 119791626 + Vsig10 protein_coding processed_transcript MGP_C3HHeJ_T0017962.1 MGP_C3HHeJ_G0015374.1 mouse_genomes_project 5 127657044 127688065 + Tctn2 processed_transcript processed_transcript MGP_C3HHeJ_T0017963.1 MGP_C3HHeJ_G0015374.1 mouse_genomes_project 5 127657044 127660371 + Tctn2 processed_transcript retained_intron MGP_C3HHeJ_T0017964.1 MGP_C3HHeJ_G0015374.1 mouse_genomes_project 5 127657079 127663938 + Tctn2 processed_transcript retained_intron MGP_C3HHeJ_T0017965.1 MGP_C3HHeJ_G0015374.1 mouse_genomes_project 5 127657082 127661621 + Tctn2 processed_transcript retained_intron MGP_C3HHeJ_T0017966.1 MGP_C3HHeJ_G0015374.1 mouse_genomes_project 5 127657087 127678819 + Tctn2 processed_transcript retained_intron MGP_C3HHeJ_T0017967.1 MGP_C3HHeJ_G0015374.1 mouse_genomes_project 5 127657092 127687785 + Tctn2 processed_transcript processed_transcript MGP_C3HHeJ_T0070885.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33381259 33466880 + MGP_C3HHeJ_P0070885 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070886.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33381262 33453380 + Rgs12 protein_coding retained_intron MGP_C3HHeJ_T0070887.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33396577 33476422 + MGP_C3HHeJ_P0070887 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070888.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33405531 33406996 + Rgs12 protein_coding processed_transcript MGP_C3HHeJ_T0070889.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33406706 33452791 + Rgs12 protein_coding processed_transcript MGP_C3HHeJ_T0070890.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33421385 33456457 + MGP_C3HHeJ_P0070890 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070891.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33421806 33476413 + MGP_C3HHeJ_P0070891 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070892.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33422072 33466738 + MGP_C3HHeJ_P0070892 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070893.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33431314 33466876 + MGP_C3HHeJ_P0070893 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070894.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33431441 33476413 + MGP_C3HHeJ_P0070894 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070895.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33453397 33455947 + Rgs12 protein_coding retained_intron MGP_C3HHeJ_T0070897.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33456115 33457621 + Rgs12 protein_coding retained_intron MGP_C3HHeJ_T0070898.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33457625 33463375 + MGP_C3HHeJ_P0070898 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0070899.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33460187 33465337 + Rgs12 protein_coding processed_transcript MGP_C3HHeJ_T0070900.1 MGP_C3HHeJ_G0029172.1 mouse_genomes_project 5 33460254 33476414 + MGP_C3HHeJ_P0070900 Rgs12 protein_coding protein_coding MGP_C3HHeJ_T0011516.1 MGP_C3HHeJ_G0009649.1 mouse_genomes_project 5 127292744 127293007 + Gm23171 misc_RNA misc_RNA MGP_C3HHeJ_T0014855.1 MGP_C3HHeJ_G0012959.1 mouse_genomes_project 5 78045945 78046282 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070965.1 MGP_C3HHeJ_G0029184.1 mouse_genomes_project 5 34354406 34476111 + MGP_C3HHeJ_P0070965 Afap1 protein_coding protein_coding MGP_C3HHeJ_T0070966.1 MGP_C3HHeJ_G0029184.1 mouse_genomes_project 5 34354552 34366187 + Afap1 protein_coding processed_transcript MGP_C3HHeJ_T0070967.1 MGP_C3HHeJ_G0029184.1 mouse_genomes_project 5 34373600 34468227 + MGP_C3HHeJ_P0070967 Afap1 protein_coding protein_coding MGP_C3HHeJ_T0070968.1 MGP_C3HHeJ_G0029184.1 mouse_genomes_project 5 34395232 34471928 + MGP_C3HHeJ_P0070968 Afap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0070969.1 MGP_C3HHeJ_G0029184.1 mouse_genomes_project 5 34458452 34462673 + Afap1 protein_coding retained_intron MGP_C3HHeJ_T0074485.1 MGP_C3HHeJ_G0029855.1 mouse_genomes_project 5 138006768 138027767 - MGP_C3HHeJ_P0074485 Eif4h protein_coding protein_coding MGP_C3HHeJ_T0074486.1 MGP_C3HHeJ_G0029855.1 mouse_genomes_project 5 138006924 138027624 - MGP_C3HHeJ_P0074486 Eif4h protein_coding protein_coding MGP_C3HHeJ_T0074487.1 MGP_C3HHeJ_G0029855.1 mouse_genomes_project 5 138010912 138027602 - Eif4h protein_coding retained_intron MGP_C3HHeJ_T0074488.1 MGP_C3HHeJ_G0029855.1 mouse_genomes_project 5 138011915 138027579 - Eif4h protein_coding retained_intron MGP_C3HHeJ_T0074489.1 MGP_C3HHeJ_G0029855.1 mouse_genomes_project 5 138025738 138027587 - Eif4h protein_coding retained_intron MGP_C3HHeJ_T0074543.1 MGP_C3HHeJ_G0029867.1 mouse_genomes_project 5 138502737 138508104 - MGP_C3HHeJ_P0074543 Vps37d protein_coding protein_coding MGP_C3HHeJ_T0074544.1 MGP_C3HHeJ_G0029867.1 mouse_genomes_project 5 138502740 138508104 - MGP_C3HHeJ_P0074544 Vps37d protein_coding protein_coding MGP_C3HHeJ_T0074002.1 MGP_C3HHeJ_G0029775.1 mouse_genomes_project 5 126926028 126947681 + MGP_C3HHeJ_P0074002 Denr protein_coding protein_coding MGP_C3HHeJ_T0074003.1 MGP_C3HHeJ_G0029775.1 mouse_genomes_project 5 126926122 126927362 + Denr protein_coding processed_transcript MGP_C3HHeJ_T0074004.1 MGP_C3HHeJ_G0029775.1 mouse_genomes_project 5 126926128 126930090 + Denr protein_coding retained_intron MGP_C3HHeJ_T0074005.1 MGP_C3HHeJ_G0029775.1 mouse_genomes_project 5 126926135 126927342 + Denr protein_coding retained_intron MGP_C3HHeJ_T0074006.1 MGP_C3HHeJ_G0029775.1 mouse_genomes_project 5 126926342 126945979 + MGP_C3HHeJ_P0074006 Denr protein_coding protein_coding MGP_C3HHeJ_T0001472.1 MGP_C3HHeJ_G0001399.1 mouse_genomes_project 5 32903740 32906145 + TEC TEC MGP_C3HHeJ_T0071285.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287560 47646734 - Kcnip4 protein_coding processed_transcript MGP_C3HHeJ_T0071286.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287560 47494635 - MGP_C3HHeJ_P0071286 Kcnip4 protein_coding protein_coding MGP_C3HHeJ_T0071287.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287560 48457210 - MGP_C3HHeJ_P0071287 Kcnip4 protein_coding protein_coding MGP_C3HHeJ_T0071288.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287560 47791335 - MGP_C3HHeJ_P0071288 Kcnip4 protein_coding protein_coding MGP_C3HHeJ_T0071289.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287561 47391407 - Kcnip4 protein_coding processed_transcript MGP_C3HHeJ_T0071290.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287565 48457067 - MGP_C3HHeJ_P0071290 Kcnip4 protein_coding protein_coding MGP_C3HHeJ_T0071291.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47287570 48201038 - MGP_C3HHeJ_P0071291 Kcnip4 protein_coding protein_coding MGP_C3HHeJ_T0071294.1 MGP_C3HHeJ_G0029240.1 mouse_genomes_project 5 47294092 47646734 - Kcnip4 protein_coding processed_transcript MGP_C3HHeJ_T0070695.1 MGP_C3HHeJ_G0029145.1 mouse_genomes_project 5 31796720 31799963 - MGP_C3HHeJ_P0070695 Nkx1-1 protein_coding protein_coding MGP_C3HHeJ_T0071741.1 MGP_C3HHeJ_G0029320.1 mouse_genomes_project 5 72838553 72847451 - MGP_C3HHeJ_P0071741 Gm10135 protein_coding protein_coding MGP_C3HHeJ_T0072040.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87325988 87361191 + MGP_C3HHeJ_P0072040 Ythdc1 protein_coding protein_coding MGP_C3HHeJ_T0072041.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87326000 87361196 + MGP_C3HHeJ_P0072041 Ythdc1 protein_coding protein_coding MGP_C3HHeJ_T0072042.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87326263 87361196 + MGP_C3HHeJ_P0072042 Ythdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072043.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87326331 87352709 + MGP_C3HHeJ_P0072043 Ythdc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072044.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87326331 87361194 + MGP_C3HHeJ_P0072044 Ythdc1 protein_coding protein_coding MGP_C3HHeJ_T0072045.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87328183 87334571 + Ythdc1 protein_coding retained_intron MGP_C3HHeJ_T0072046.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87340188 87361196 + Ythdc1 protein_coding retained_intron MGP_C3HHeJ_T0072047.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87347720 87352869 + Ythdc1 protein_coding retained_intron MGP_C3HHeJ_T0072048.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87353853 87360269 + Ythdc1 protein_coding processed_transcript MGP_C3HHeJ_T0072049.1 MGP_C3HHeJ_G0029374.1 mouse_genomes_project 5 87356298 87361194 + Ythdc1 protein_coding retained_intron MGP_C3HHeJ_T0001744.1 MGP_C3HHeJ_G0001668.1 mouse_genomes_project 5 118766638 118768101 - TEC TEC MGP_C3HHeJ_T0099473.1 MGP_C3HHeJ_G0037667.1 mouse_genomes_project 5 112650954 112651061 - Gm22716 snRNA snRNA MGP_C3HHeJ_T0071425.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64320577 64351372 + MGP_C3HHeJ_P0071425 Klf3 protein_coding protein_coding MGP_C3HHeJ_T0071426.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64320766 64340291 + Klf3 protein_coding retained_intron MGP_C3HHeJ_T0071427.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64320811 64339354 + Klf3 protein_coding processed_transcript MGP_C3HHeJ_T0071428.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64329555 64347932 + MGP_C3HHeJ_P0071428 Klf3 protein_coding protein_coding MGP_C3HHeJ_T0071429.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64329556 64336511 + Klf3 protein_coding retained_intron MGP_C3HHeJ_T0071430.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64329600 64339425 + MGP_C3HHeJ_P0071430 Klf3 protein_coding protein_coding MGP_C3HHeJ_T0071431.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64333061 64342589 + Klf3 protein_coding retained_intron MGP_C3HHeJ_T0071432.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64339529 64345617 + MGP_C3HHeJ_P0071432 Klf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071433.1 MGP_C3HHeJ_G0029267.1 mouse_genomes_project 5 64345260 64348000 + MGP_C3HHeJ_P0071433 Klf3 protein_coding protein_coding MGP_C3HHeJ_T0004678.1 MGP_C3HHeJ_G0004037.1 mouse_genomes_project 5 101960005 101967293 + Gm15777 antisense antisense MGP_C3HHeJ_T0007983.1 MGP_C3HHeJ_G0006510.1 mouse_genomes_project 5 23531522 23532976 + 1700096K18Rik lincRNA lincRNA MGP_C3HHeJ_T0001527.1 MGP_C3HHeJ_G0001454.1 mouse_genomes_project 5 47696960 47698181 - TEC TEC MGP_C3HHeJ_T0001556.1 MGP_C3HHeJ_G0001482.1 mouse_genomes_project 5 50900001 50901230 - TEC TEC MGP_C3HHeJ_T0008076.1 MGP_C3HHeJ_G0006577.1 mouse_genomes_project 5 72306996 72307896 - AU023070 lincRNA lincRNA MGP_C3HHeJ_T0004788.1 MGP_C3HHeJ_G0004114.1 mouse_genomes_project 5 139641863 139643696 - Gm15701 antisense antisense MGP_C3HHeJ_T0004580.1 MGP_C3HHeJ_G0003962.1 mouse_genomes_project 5 28684734 28698219 + Gm42765 antisense antisense MGP_C3HHeJ_T0004581.1 MGP_C3HHeJ_G0003962.1 mouse_genomes_project 5 28684777 28700499 + Gm42765 antisense antisense MGP_C3HHeJ_T0075658.1 MGP_C3HHeJ_G0030099.1 mouse_genomes_project 5 154221653 154260438 + MGP_C3HHeJ_P0075658 Tex26 protein_coding protein_coding MGP_C3HHeJ_T0075659.1 MGP_C3HHeJ_G0030099.1 mouse_genomes_project 5 154221675 154222995 + Tex26 protein_coding processed_transcript MGP_C3HHeJ_T0075660.1 MGP_C3HHeJ_G0030099.1 mouse_genomes_project 5 154221699 154260438 + MGP_C3HHeJ_P0075660 Tex26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075661.1 MGP_C3HHeJ_G0030099.1 mouse_genomes_project 5 154221708 154260350 + MGP_C3HHeJ_P0075661 Tex26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075662.1 MGP_C3HHeJ_G0030099.1 mouse_genomes_project 5 154221712 154260350 + MGP_C3HHeJ_P0075662 Tex26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075663.1 MGP_C3HHeJ_G0030099.1 mouse_genomes_project 5 154221720 154260256 + MGP_C3HHeJ_P0075663 Tex26 protein_coding protein_coding MGP_C3HHeJ_T0100713.1 MGP_C3HHeJ_G0038907.1 mouse_genomes_project 5 88327568 88327691 - Gm24314 snoRNA snoRNA MGP_C3HHeJ_T0001485.1 MGP_C3HHeJ_G0001412.1 mouse_genomes_project 5 39878645 39880310 + TEC TEC MGP_C3HHeJ_T0100714.1 MGP_C3HHeJ_G0038908.1 mouse_genomes_project 5 90509067 90509196 + Gm25758 snoRNA snoRNA MGP_C3HHeJ_T0070822.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32945594 32971441 + MGP_C3HHeJ_P0070822 Sh3bp2 protein_coding protein_coding MGP_C3HHeJ_T0070823.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32945602 32983382 + MGP_C3HHeJ_P0070823 Sh3bp2 protein_coding protein_coding MGP_C3HHeJ_T0070824.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32963121 32977462 + Sh3bp2 protein_coding retained_intron MGP_C3HHeJ_T0070825.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32963121 32972487 + MGP_C3HHeJ_P0070825 Sh3bp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070826.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32963121 32983366 + MGP_C3HHeJ_P0070826 Sh3bp2 protein_coding protein_coding MGP_C3HHeJ_T0070827.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32969332 32983366 + MGP_C3HHeJ_P0070827 Sh3bp2 protein_coding protein_coding MGP_C3HHeJ_T0070828.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32969444 32983379 + MGP_C3HHeJ_P0070828 Sh3bp2 protein_coding protein_coding MGP_C3HHeJ_T0070829.1 MGP_C3HHeJ_G0029165.1 mouse_genomes_project 5 32971285 32972533 + Sh3bp2 protein_coding retained_intron MGP_C3HHeJ_T0004558.1 MGP_C3HHeJ_G0003944.1 mouse_genomes_project 5 5159756 5178270 - Gm15731 antisense antisense MGP_C3HHeJ_T0001764.1 MGP_C3HHeJ_G0001688.1 mouse_genomes_project 5 123943698 123946959 - TEC TEC MGP_C3HHeJ_T0001641.1 MGP_C3HHeJ_G0001566.1 mouse_genomes_project 5 68982691 68984892 - TEC TEC MGP_C3HHeJ_T0070191.1 MGP_C3HHeJ_G0029059.1 mouse_genomes_project 5 23517572 23519533 + MGP_C3HHeJ_P0070191 Cct8l1 protein_coding protein_coding MGP_C3HHeJ_T0004590.1 MGP_C3HHeJ_G0003970.1 mouse_genomes_project 5 32576312 32577313 + Gm42846 antisense antisense MGP_C3HHeJ_T0004685.1 MGP_C3HHeJ_G0004040.1 mouse_genomes_project 5 103793116 103804339 - 1700013M08Rik antisense antisense MGP_C3HHeJ_T0004686.1 MGP_C3HHeJ_G0004040.1 mouse_genomes_project 5 103799518 103800316 - 1700013M08Rik antisense antisense MGP_C3HHeJ_T0001833.1 MGP_C3HHeJ_G0001756.1 mouse_genomes_project 5 135765369 135767534 - TEC TEC MGP_C3HHeJ_T0011497.1 MGP_C3HHeJ_G0009630.1 mouse_genomes_project 5 30124159 30124461 + Gm24436 misc_RNA misc_RNA MGP_C3HHeJ_T0014873.1 MGP_C3HHeJ_G0012977.1 mouse_genomes_project 5 88653461 88653840 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015020.1 MGP_C3HHeJ_G0013124.1 mouse_genomes_project 5 150421759 150422568 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072585.1 MGP_C3HHeJ_G0029506.1 mouse_genomes_project 5 105426726 105439495 + MGP_C3HHeJ_P0072585 Nudt9 protein_coding protein_coding MGP_C3HHeJ_T0072586.1 MGP_C3HHeJ_G0029506.1 mouse_genomes_project 5 105426948 105441075 + MGP_C3HHeJ_P0072586 Nudt9 protein_coding protein_coding MGP_C3HHeJ_T0072587.1 MGP_C3HHeJ_G0029506.1 mouse_genomes_project 5 105427291 105447202 + MGP_C3HHeJ_P0072587 Nudt9 protein_coding protein_coding MGP_C3HHeJ_T0072588.1 MGP_C3HHeJ_G0029506.1 mouse_genomes_project 5 105427390 105439729 + Nudt9 protein_coding retained_intron MGP_C3HHeJ_T0072589.1 MGP_C3HHeJ_G0029506.1 mouse_genomes_project 5 105427576 105439475 + MGP_C3HHeJ_P0072589 Nudt9 protein_coding protein_coding MGP_C3HHeJ_T0072590.1 MGP_C3HHeJ_G0029506.1 mouse_genomes_project 5 105428043 105436842 + MGP_C3HHeJ_P0072590 Nudt9 protein_coding protein_coding MGP_C3HHeJ_T0075303.1 MGP_C3HHeJ_G0030021.1 mouse_genomes_project 5 147418408 147436898 - MGP_C3HHeJ_P0075303 Spdye4a protein_coding protein_coding MGP_C3HHeJ_T0008223.1 MGP_C3HHeJ_G0006680.1 mouse_genomes_project 5 115232701 115243443 + Gm43095 lincRNA lincRNA MGP_C3HHeJ_T0001795.1 MGP_C3HHeJ_G0001718.1 mouse_genomes_project 5 130137028 130140407 + TEC TEC MGP_C3HHeJ_T0072837.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110458935 110484264 + MGP_C3HHeJ_P0072837 Idua protein_coding protein_coding MGP_C3HHeJ_T0072838.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110467838 110484269 + MGP_C3HHeJ_P0072838 Idua protein_coding protein_coding MGP_C3HHeJ_T0072839.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110467838 110484264 + MGP_C3HHeJ_P0072839 Idua protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072840.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110468027 110480453 + Idua protein_coding retained_intron MGP_C3HHeJ_T0072841.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110468043 110484264 + MGP_C3HHeJ_P0072841 Idua protein_coding protein_coding MGP_C3HHeJ_T0072842.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110468079 110484111 + MGP_C3HHeJ_P0072842 Idua protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072843.1 MGP_C3HHeJ_G0029560.1 mouse_genomes_project 5 110468191 110478950 + Idua protein_coding processed_transcript MGP_C3HHeJ_T0074970.1 MGP_C3HHeJ_G0029951.1 mouse_genomes_project 5 141855531 141859107 + MGP_C3HHeJ_P0074970 Cops6 protein_coding protein_coding MGP_C3HHeJ_T0074971.1 MGP_C3HHeJ_G0029951.1 mouse_genomes_project 5 141855560 141858439 + MGP_C3HHeJ_P0074971 Cops6 protein_coding protein_coding MGP_C3HHeJ_T0074972.1 MGP_C3HHeJ_G0029951.1 mouse_genomes_project 5 141855569 141856845 + Cops6 protein_coding retained_intron MGP_C3HHeJ_T0074973.1 MGP_C3HHeJ_G0029951.1 mouse_genomes_project 5 141855629 141858600 + Cops6 protein_coding retained_intron MGP_C3HHeJ_T0074974.1 MGP_C3HHeJ_G0029951.1 mouse_genomes_project 5 141857237 141858380 + MGP_C3HHeJ_P0074974 Cops6 protein_coding protein_coding MGP_C3HHeJ_T0075042.1 MGP_C3HHeJ_G0029965.1 mouse_genomes_project 5 142464649 142467307 - MGP_C3HHeJ_P0075042 Gm3404 protein_coding protein_coding MGP_C3HHeJ_T0099487.1 MGP_C3HHeJ_G0037681.1 mouse_genomes_project 5 129613026 129613133 - Gm24839 snRNA snRNA MGP_C3HHeJ_T0014679.1 MGP_C3HHeJ_G0012783.1 mouse_genomes_project 5 7135451 7136196 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001408.1 MGP_C3HHeJ_G0001338.1 mouse_genomes_project 5 6158973 6159204 + TEC TEC MGP_C3HHeJ_T0072146.1 MGP_C3HHeJ_G0029410.1 mouse_genomes_project 5 89305795 89323645 - MGP_C3HHeJ_P0072146 Grsf1 protein_coding protein_coding MGP_C3HHeJ_T0072147.1 MGP_C3HHeJ_G0029410.1 mouse_genomes_project 5 89307516 89324319 - MGP_C3HHeJ_P0072147 Grsf1 protein_coding protein_coding MGP_C3HHeJ_T0072148.1 MGP_C3HHeJ_G0029410.1 mouse_genomes_project 5 89310603 89319517 - Grsf1 protein_coding retained_intron MGP_C3HHeJ_T0072149.1 MGP_C3HHeJ_G0029410.1 mouse_genomes_project 5 89321855 89323347 - Grsf1 protein_coding processed_transcript MGP_C3HHeJ_T0008211.1 MGP_C3HHeJ_G0006674.1 mouse_genomes_project 5 114258272 114274833 - Miat lincRNA lincRNA MGP_C3HHeJ_T0008212.1 MGP_C3HHeJ_G0006674.1 mouse_genomes_project 5 114258274 114274386 - Miat lincRNA lincRNA MGP_C3HHeJ_T0008214.1 MGP_C3HHeJ_G0006674.1 mouse_genomes_project 5 114266433 114274082 - Miat lincRNA lincRNA MGP_C3HHeJ_T0008215.1 MGP_C3HHeJ_G0006674.1 mouse_genomes_project 5 114266724 114274367 - Miat lincRNA lincRNA MGP_C3HHeJ_T0008216.1 MGP_C3HHeJ_G0006674.1 mouse_genomes_project 5 114266922 114274113 - Miat lincRNA lincRNA MGP_C3HHeJ_T0008217.1 MGP_C3HHeJ_G0006674.1 mouse_genomes_project 5 114273543 114274079 - Miat lincRNA lincRNA MGP_C3HHeJ_T0075440.1 MGP_C3HHeJ_G0030052.1 mouse_genomes_project 5 149338625 149365674 + MGP_C3HHeJ_P0075440 Arpc1a protein_coding protein_coding MGP_C3HHeJ_T0075441.1 MGP_C3HHeJ_G0030052.1 mouse_genomes_project 5 149338679 149353024 + Arpc1a protein_coding processed_transcript MGP_C3HHeJ_T0075442.1 MGP_C3HHeJ_G0030052.1 mouse_genomes_project 5 149338701 149365669 + MGP_C3HHeJ_P0075442 Arpc1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075443.1 MGP_C3HHeJ_G0030052.1 mouse_genomes_project 5 149338894 149354069 + MGP_C3HHeJ_P0075443 Arpc1a protein_coding protein_coding MGP_C3HHeJ_T0075444.1 MGP_C3HHeJ_G0030052.1 mouse_genomes_project 5 149353097 149355813 + Arpc1a protein_coding retained_intron MGP_C3HHeJ_T0075445.1 MGP_C3HHeJ_G0030052.1 mouse_genomes_project 5 149361181 149365505 + Arpc1a protein_coding retained_intron MGP_C3HHeJ_T0074283.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132983856 133005112 - MGP_C3HHeJ_P0074283 protein_coding protein_coding MGP_C3HHeJ_T0074284.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132983856 132996808 - MGP_C3HHeJ_P0074284 protein_coding protein_coding MGP_C3HHeJ_T0074285.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132987617 132996848 - MGP_C3HHeJ_P0074285 protein_coding protein_coding MGP_C3HHeJ_T0074286.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132988810 133004817 - MGP_C3HHeJ_P0074286 protein_coding protein_coding MGP_C3HHeJ_T0074287.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132989530 132996841 - protein_coding retained_intron MGP_C3HHeJ_T0074288.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132994500 133004915 - protein_coding retained_intron MGP_C3HHeJ_T0074289.1 MGP_C3HHeJ_G0029825.1 mouse_genomes_project 5 132997015 133004870 - protein_coding processed_transcript MGP_C3HHeJ_T0001783.1 MGP_C3HHeJ_G0001707.1 mouse_genomes_project 5 126560472 126560934 - TEC TEC MGP_C3HHeJ_T0001673.1 MGP_C3HHeJ_G0001597.1 mouse_genomes_project 5 82536615 82538032 - TEC TEC MGP_C3HHeJ_T0004713.1 MGP_C3HHeJ_G0004062.1 mouse_genomes_project 5 117192307 117198268 - Gm13822 antisense antisense MGP_C3HHeJ_T0072054.1 MGP_C3HHeJ_G0029378.1 mouse_genomes_project 5 87596670 87623126 - MGP_C3HHeJ_P0072054 Ugt2b36 protein_coding protein_coding MGP_C3HHeJ_T0072055.1 MGP_C3HHeJ_G0029378.1 mouse_genomes_project 5 87597181 87623119 - MGP_C3HHeJ_P0072055 Ugt2b36 protein_coding protein_coding MGP_C3HHeJ_T0072056.1 MGP_C3HHeJ_G0029378.1 mouse_genomes_project 5 87597184 87621728 - Ugt2b36 protein_coding retained_intron MGP_C3HHeJ_T0072057.1 MGP_C3HHeJ_G0029378.1 mouse_genomes_project 5 87611758 87623117 - MGP_C3HHeJ_P0072057 Ugt2b36 protein_coding protein_coding MGP_C3HHeJ_T0069845.1 MGP_C3HHeJ_G0028994.1 mouse_genomes_project 5 9695234 9922194 + MGP_C3HHeJ_P0069845 Sema3d protein_coding protein_coding MGP_C3HHeJ_T0069846.1 MGP_C3HHeJ_G0028994.1 mouse_genomes_project 5 9695355 9891633 + Sema3d protein_coding processed_transcript MGP_C3HHeJ_T0069847.1 MGP_C3HHeJ_G0028994.1 mouse_genomes_project 5 9695355 9911680 + MGP_C3HHeJ_P0069847 Sema3d protein_coding protein_coding MGP_C3HHeJ_T0069848.1 MGP_C3HHeJ_G0028994.1 mouse_genomes_project 5 9810328 9838524 + Sema3d protein_coding processed_transcript MGP_C3HHeJ_T0069849.1 MGP_C3HHeJ_G0028994.1 mouse_genomes_project 5 9908653 9921998 + Sema3d protein_coding processed_transcript MGP_C3HHeJ_T0071012.1 MGP_C3HHeJ_G0029194.1 mouse_genomes_project 5 35261443 35262490 - MGP_C3HHeJ_P0071012 protein_coding protein_coding MGP_C3HHeJ_T0008373.1 MGP_C3HHeJ_G0006786.1 mouse_genomes_project 5 153883862 153959223 - 5730422E09Rik lincRNA lincRNA MGP_C3HHeJ_T0008374.1 MGP_C3HHeJ_G0006786.1 mouse_genomes_project 5 153883866 153887936 - 5730422E09Rik lincRNA lincRNA MGP_C3HHeJ_T0014930.1 MGP_C3HHeJ_G0013034.1 mouse_genomes_project 5 109957639 109958115 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001606.1 MGP_C3HHeJ_G0001531.1 mouse_genomes_project 5 65357449 65360328 + TEC TEC MGP_C3HHeJ_T0010587.1 MGP_C3HHeJ_G0008720.1 mouse_genomes_project 5 32293721 32293783 - Mir7024 miRNA miRNA MGP_C3HHeJ_T0072557.1 MGP_C3HHeJ_G0029499.1 mouse_genomes_project 5 104781016 104905260 + Ptpn13 protein_coding retained_intron MGP_C3HHeJ_T0072558.1 MGP_C3HHeJ_G0029499.1 mouse_genomes_project 5 104781064 104892695 + MGP_C3HHeJ_P0072558 Ptpn13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072559.1 MGP_C3HHeJ_G0029499.1 mouse_genomes_project 5 104781080 104866097 + Ptpn13 protein_coding retained_intron MGP_C3HHeJ_T0072560.1 MGP_C3HHeJ_G0029499.1 mouse_genomes_project 5 104781194 104960958 + MGP_C3HHeJ_P0072560 Ptpn13 protein_coding protein_coding MGP_C3HHeJ_T0072561.1 MGP_C3HHeJ_G0029499.1 mouse_genomes_project 5 104892520 104907165 + Ptpn13 protein_coding retained_intron MGP_C3HHeJ_T0014749.1 MGP_C3HHeJ_G0012853.1 mouse_genomes_project 5 27967912 27969132 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070196.1 MGP_C3HHeJ_G0029061.1 mouse_genomes_project 5 23779740 23798251 + Actr3b protein_coding processed_transcript MGP_C3HHeJ_T0070197.1 MGP_C3HHeJ_G0029061.1 mouse_genomes_project 5 23779786 23875334 + MGP_C3HHeJ_P0070197 Actr3b protein_coding protein_coding MGP_C3HHeJ_T0001681.1 MGP_C3HHeJ_G0001605.1 mouse_genomes_project 5 93928152 93930290 + TEC TEC MGP_C3HHeJ_T0070115.1 MGP_C3HHeJ_G0029042.1 mouse_genomes_project 5 22393971 22396368 - MGP_C3HHeJ_P0070115 Tmub1 protein_coding protein_coding MGP_C3HHeJ_T0070116.1 MGP_C3HHeJ_G0029042.1 mouse_genomes_project 5 22393979 22396139 - MGP_C3HHeJ_P0070116 Tmub1 protein_coding protein_coding MGP_C3HHeJ_T0070117.1 MGP_C3HHeJ_G0029042.1 mouse_genomes_project 5 22393979 22395831 - MGP_C3HHeJ_P0070117 Tmub1 protein_coding protein_coding MGP_C3HHeJ_T0070118.1 MGP_C3HHeJ_G0029042.1 mouse_genomes_project 5 22394562 22396101 - MGP_C3HHeJ_P0070118 Tmub1 protein_coding protein_coding MGP_C3HHeJ_T0070119.1 MGP_C3HHeJ_G0029042.1 mouse_genomes_project 5 22395066 22396305 - MGP_C3HHeJ_P0070119 Tmub1 protein_coding protein_coding MGP_C3HHeJ_T0004730.1 MGP_C3HHeJ_G0004074.1 mouse_genomes_project 5 120543781 120548135 + Gm9754 antisense antisense MGP_C3HHeJ_T0001476.1 MGP_C3HHeJ_G0001403.1 mouse_genomes_project 5 34006725 34009430 - TEC TEC MGP_C3HHeJ_T0073210.1 MGP_C3HHeJ_G0029636.1 mouse_genomes_project 5 116789164 116837330 + MGP_C3HHeJ_P0073210 Fam222a protein_coding protein_coding MGP_C3HHeJ_T0073211.1 MGP_C3HHeJ_G0029636.1 mouse_genomes_project 5 116789165 116818614 + Fam222a protein_coding processed_transcript MGP_C3HHeJ_T0004781.1 MGP_C3HHeJ_G0004109.1 mouse_genomes_project 5 138142585 138232015 + Gm43278 antisense antisense MGP_C3HHeJ_T0014850.1 MGP_C3HHeJ_G0012954.1 mouse_genomes_project 5 76445464 76445616 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098481.1 MGP_C3HHeJ_G0036686.1 mouse_genomes_project 5 998644 1000533 + Gm43031 sense_intronic sense_intronic MGP_C3HHeJ_T0072522.1 MGP_C3HHeJ_G0029493.1 mouse_genomes_project 5 102131094 102132192 + MGP_C3HHeJ_P0072522 Agpat9 protein_coding protein_coding MGP_C3HHeJ_T0072523.1 MGP_C3HHeJ_G0029493.1 mouse_genomes_project 5 102131511 102185104 + MGP_C3HHeJ_P0072523 Agpat9 protein_coding protein_coding MGP_C3HHeJ_T0072524.1 MGP_C3HHeJ_G0029493.1 mouse_genomes_project 5 102131600 102185104 + MGP_C3HHeJ_P0072524 Agpat9 protein_coding protein_coding MGP_C3HHeJ_T0072525.1 MGP_C3HHeJ_G0029493.1 mouse_genomes_project 5 102131745 102185107 + MGP_C3HHeJ_P0072525 Agpat9 protein_coding protein_coding MGP_C3HHeJ_T0072526.1 MGP_C3HHeJ_G0029493.1 mouse_genomes_project 5 102131798 102132232 + MGP_C3HHeJ_P0072526 Agpat9 protein_coding protein_coding MGP_C3HHeJ_T0014681.1 MGP_C3HHeJ_G0012785.1 mouse_genomes_project 5 7822261 7823475 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008120.1 MGP_C3HHeJ_G0006613.1 mouse_genomes_project 5 92835266 92847939 + Gm26582 lincRNA lincRNA MGP_C3HHeJ_T0014707.1 MGP_C3HHeJ_G0012811.1 mouse_genomes_project 5 19326673 19328393 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070941.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34155187 34188334 - MGP_C3HHeJ_P0070941 Sh3tc1 protein_coding protein_coding MGP_C3HHeJ_T0070942.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34155188 34183004 - MGP_C3HHeJ_P0070942 Sh3tc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070943.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34155190 34175309 - MGP_C3HHeJ_P0070943 Sh3tc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070944.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34155190 34199045 - MGP_C3HHeJ_P0070944 Sh3tc1 protein_coding protein_coding MGP_C3HHeJ_T0070945.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34155192 34178296 - Sh3tc1 protein_coding retained_intron MGP_C3HHeJ_T0070946.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34155318 34183101 - MGP_C3HHeJ_P0070946 Sh3tc1 protein_coding protein_coding MGP_C3HHeJ_T0070947.1 MGP_C3HHeJ_G0029182.1 mouse_genomes_project 5 34182125 34188070 - Sh3tc1 protein_coding processed_transcript MGP_C3HHeJ_T0008029.1 MGP_C3HHeJ_G0006538.1 mouse_genomes_project 5 38001567 38144181 - 4930513D17Rik lincRNA lincRNA MGP_C3HHeJ_T0008030.1 MGP_C3HHeJ_G0006538.1 mouse_genomes_project 5 38002383 38144224 - 4930513D17Rik lincRNA lincRNA MGP_C3HHeJ_T0008031.1 MGP_C3HHeJ_G0006538.1 mouse_genomes_project 5 38016944 38144179 - 4930513D17Rik lincRNA lincRNA MGP_C3HHeJ_T0014882.1 MGP_C3HHeJ_G0012986.1 mouse_genomes_project 5 91292226 91292797 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073735.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125059707 125079998 + MGP_C3HHeJ_P0073735 Ppp1cc protein_coding protein_coding MGP_C3HHeJ_T0073736.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125059785 125079998 + MGP_C3HHeJ_P0073736 Ppp1cc protein_coding protein_coding MGP_C3HHeJ_T0073737.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125059785 125079994 + MGP_C3HHeJ_P0073737 Ppp1cc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073738.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125059785 125079998 + MGP_C3HHeJ_P0073738 Ppp1cc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073739.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125059990 125080002 + MGP_C3HHeJ_P0073739 Ppp1cc protein_coding unknown_likely_coding MGP_C3HHeJ_T0073740.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125060022 125079821 + MGP_C3HHeJ_P0073740 Ppp1cc protein_coding protein_coding MGP_C3HHeJ_T0073741.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125060386 125072093 + Ppp1cc protein_coding retained_intron MGP_C3HHeJ_T0073742.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125071294 125079990 + MGP_C3HHeJ_P0073742 Ppp1cc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073743.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125075433 125077573 + Ppp1cc protein_coding retained_intron MGP_C3HHeJ_T0073744.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125075708 125079990 + MGP_C3HHeJ_P0073744 Ppp1cc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073745.1 MGP_C3HHeJ_G0029736.1 mouse_genomes_project 5 125076516 125079400 + MGP_C3HHeJ_P0073745 Ppp1cc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014809.1 MGP_C3HHeJ_G0012913.1 mouse_genomes_project 5 58288870 58289564 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075504.1 MGP_C3HHeJ_G0030066.1 mouse_genomes_project 5 149739507 149815317 - MGP_C3HHeJ_P0075504 protein_coding protein_coding MGP_C3HHeJ_T0008173.1 MGP_C3HHeJ_G0006652.1 mouse_genomes_project 5 108147947 108225271 - Gm28050 lincRNA lincRNA MGP_C3HHeJ_T0008174.1 MGP_C3HHeJ_G0006652.1 mouse_genomes_project 5 108208268 108225274 - Gm28050 lincRNA lincRNA MGP_C3HHeJ_T0071601.1 MGP_C3HHeJ_G0029292.1 mouse_genomes_project 5 66731842 66736719 - MGP_C3HHeJ_P0071601 Phox2b protein_coding protein_coding MGP_C3HHeJ_T0071602.1 MGP_C3HHeJ_G0029292.1 mouse_genomes_project 5 66734457 66736475 - MGP_C3HHeJ_P0071602 Phox2b protein_coding protein_coding MGP_C3HHeJ_T0075359.1 MGP_C3HHeJ_G0030035.1 mouse_genomes_project 5 148083568 148087773 - MGP_C3HHeJ_P0075359 Ankrd61 protein_coding protein_coding MGP_C3HHeJ_T0075360.1 MGP_C3HHeJ_G0030035.1 mouse_genomes_project 5 148083568 148087736 - MGP_C3HHeJ_P0075360 Ankrd61 protein_coding protein_coding MGP_C3HHeJ_T0075361.1 MGP_C3HHeJ_G0030035.1 mouse_genomes_project 5 148083570 148090404 - MGP_C3HHeJ_P0075361 Ankrd61 protein_coding protein_coding MGP_C3HHeJ_T0001429.1 MGP_C3HHeJ_G0001359.1 mouse_genomes_project 5 13614152 13616804 + TEC TEC MGP_C3HHeJ_T0070260.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27861609 27916513 + MGP_C3HHeJ_P0070260 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070261.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27861861 27894517 + MGP_C3HHeJ_P0070261 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070262.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27861910 27915664 + MGP_C3HHeJ_P0070262 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070263.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27861916 27884005 + MGP_C3HHeJ_P0070263 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070264.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27861945 27865011 + Dnajb6 protein_coding processed_transcript MGP_C3HHeJ_T0070265.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27861954 27952465 + MGP_C3HHeJ_P0070265 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070266.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27863187 27874358 + MGP_C3HHeJ_P0070266 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070267.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27876766 27878783 + Dnajb6 protein_coding retained_intron MGP_C3HHeJ_T0070268.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27880384 27883996 + Dnajb6 protein_coding processed_transcript MGP_C3HHeJ_T0070269.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27890217 27891664 + Dnajb6 protein_coding retained_intron MGP_C3HHeJ_T0070270.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27890511 27911609 + MGP_C3HHeJ_P0070270 Dnajb6 protein_coding protein_coding MGP_C3HHeJ_T0070271.1 MGP_C3HHeJ_G0029077.1 mouse_genomes_project 5 27891226 27892681 + Dnajb6 protein_coding retained_intron MGP_C3HHeJ_T0071336.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51880237 51916722 + MGP_C3HHeJ_P0071336 Anapc4 protein_coding protein_coding MGP_C3HHeJ_T0071337.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51880351 51915667 + MGP_C3HHeJ_P0071337 Anapc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071338.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51890267 51896175 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071339.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51890383 51898074 + MGP_C3HHeJ_P0071339 Anapc4 protein_coding protein_coding MGP_C3HHeJ_T0071340.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51890396 51898061 + MGP_C3HHeJ_P0071340 Anapc4 protein_coding protein_coding MGP_C3HHeJ_T0071341.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51895112 51896250 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071342.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51897698 51908087 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071343.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51903620 51905882 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071344.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51907979 51914921 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071345.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51909833 51911475 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071346.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51910075 51913580 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0071347.1 MGP_C3HHeJ_G0029250.1 mouse_genomes_project 5 51914537 51915659 + Anapc4 protein_coding retained_intron MGP_C3HHeJ_T0008231.1 MGP_C3HHeJ_G0006684.1 mouse_genomes_project 5 117655171 117660193 + Gm42903 lincRNA lincRNA MGP_C3HHeJ_T0070130.1 MGP_C3HHeJ_G0029046.1 mouse_genomes_project 5 22499753 22512776 - MGP_C3HHeJ_P0070130 4931409K22Rik protein_coding protein_coding MGP_C3HHeJ_T0070131.1 MGP_C3HHeJ_G0029046.1 mouse_genomes_project 5 22499753 22512776 - MGP_C3HHeJ_P0070131 4931409K22Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070132.1 MGP_C3HHeJ_G0029046.1 mouse_genomes_project 5 22499769 22509999 - 4931409K22Rik protein_coding retained_intron MGP_C3HHeJ_T0070133.1 MGP_C3HHeJ_G0029046.1 mouse_genomes_project 5 22510000 22512835 - MGP_C3HHeJ_P0070133 4931409K22Rik protein_coding protein_coding MGP_C3HHeJ_T0070134.1 MGP_C3HHeJ_G0029046.1 mouse_genomes_project 5 22510009 22514175 - 4931409K22Rik protein_coding processed_transcript MGP_C3HHeJ_T0001811.1 MGP_C3HHeJ_G0001734.1 mouse_genomes_project 5 134144849 134146964 - TEC TEC MGP_C3HHeJ_T0014751.1 MGP_C3HHeJ_G0012855.1 mouse_genomes_project 5 29568297 29568744 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073260.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117169800 117187293 + MGP_C3HHeJ_P0073260 Oasl2 protein_coding protein_coding MGP_C3HHeJ_T0073261.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117169865 117172712 + MGP_C3HHeJ_P0073261 Oasl2 protein_coding protein_coding MGP_C3HHeJ_T0073262.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117169894 117172837 + MGP_C3HHeJ_P0073262 Oasl2 protein_coding protein_coding MGP_C3HHeJ_T0073263.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117170396 117171215 + Oasl2 protein_coding retained_intron MGP_C3HHeJ_T0073264.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117170440 117173149 + Oasl2 protein_coding retained_intron MGP_C3HHeJ_T0073265.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117170606 117187285 + MGP_C3HHeJ_P0073265 Oasl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073266.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117174238 117186279 + MGP_C3HHeJ_P0073266 Oasl2 protein_coding protein_coding MGP_C3HHeJ_T0073267.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117174719 117176839 + Oasl2 protein_coding retained_intron MGP_C3HHeJ_T0073268.1 MGP_C3HHeJ_G0029646.1 mouse_genomes_project 5 117177327 117179619 + Oasl2 protein_coding retained_intron MGP_C3HHeJ_T0014732.1 MGP_C3HHeJ_G0012836.1 mouse_genomes_project 5 23420580 23420830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014879.1 MGP_C3HHeJ_G0012983.1 mouse_genomes_project 5 89494200 89495590 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073537.1 MGP_C3HHeJ_G0029699.1 mouse_genomes_project 5 123087935 123110516 - MGP_C3HHeJ_P0073537 Plbd2 protein_coding protein_coding MGP_C3HHeJ_T0073538.1 MGP_C3HHeJ_G0029699.1 mouse_genomes_project 5 123089900 123110492 - Plbd2 protein_coding retained_intron MGP_C3HHeJ_T0073539.1 MGP_C3HHeJ_G0029699.1 mouse_genomes_project 5 123091952 123110503 - Plbd2 protein_coding retained_intron MGP_C3HHeJ_T0075195.1 MGP_C3HHeJ_G0030000.1 mouse_genomes_project 5 144662496 144694728 - MGP_C3HHeJ_P0075195 Ttyh3 protein_coding protein_coding MGP_C3HHeJ_T0075196.1 MGP_C3HHeJ_G0030000.1 mouse_genomes_project 5 144665011 144669652 - MGP_C3HHeJ_P0075196 Ttyh3 protein_coding protein_coding MGP_C3HHeJ_T0075197.1 MGP_C3HHeJ_G0030000.1 mouse_genomes_project 5 144673501 144673973 - Ttyh3 protein_coding retained_intron MGP_C3HHeJ_T0075198.1 MGP_C3HHeJ_G0030000.1 mouse_genomes_project 5 144673882 144679488 - Ttyh3 protein_coding retained_intron MGP_C3HHeJ_T0075199.1 MGP_C3HHeJ_G0030000.1 mouse_genomes_project 5 144694371 144694898 - Ttyh3 protein_coding processed_transcript MGP_C3HHeJ_T0008360.1 MGP_C3HHeJ_G0006775.1 mouse_genomes_project 5 152409374 152413032 + Gm43156 lincRNA lincRNA MGP_C3HHeJ_T0014907.1 MGP_C3HHeJ_G0013011.1 mouse_genomes_project 5 103737039 103737771 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001467.1 MGP_C3HHeJ_G0001394.1 mouse_genomes_project 5 31140994 31142032 - TEC TEC MGP_C3HHeJ_T0001818.1 MGP_C3HHeJ_G0001741.1 mouse_genomes_project 5 134979063 134980218 - TEC TEC MGP_C3HHeJ_T0074346.1 MGP_C3HHeJ_G0029837.1 mouse_genomes_project 5 133417317 133429759 + MGP_C3HHeJ_P0074346 Tmem248 protein_coding protein_coding MGP_C3HHeJ_T0074347.1 MGP_C3HHeJ_G0029837.1 mouse_genomes_project 5 133419980 133432222 + MGP_C3HHeJ_P0074347 Tmem248 protein_coding protein_coding MGP_C3HHeJ_T0074348.1 MGP_C3HHeJ_G0029837.1 mouse_genomes_project 5 133419980 133445764 + MGP_C3HHeJ_P0074348 Tmem248 protein_coding protein_coding MGP_C3HHeJ_T0074349.1 MGP_C3HHeJ_G0029837.1 mouse_genomes_project 5 133420076 133432098 + MGP_C3HHeJ_P0074349 Tmem248 protein_coding protein_coding MGP_C3HHeJ_T0074350.1 MGP_C3HHeJ_G0029837.1 mouse_genomes_project 5 133422571 133445665 + MGP_C3HHeJ_P0074350 Tmem248 protein_coding protein_coding MGP_C3HHeJ_T0014918.1 MGP_C3HHeJ_G0013022.1 mouse_genomes_project 5 107998653 107998976 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008155.1 MGP_C3HHeJ_G0006639.1 mouse_genomes_project 5 104579129 104645955 - 4930429D17Rik lincRNA lincRNA MGP_C3HHeJ_T0074085.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127493481 127516839 + MGP_C3HHeJ_P0074085 Kmt5a protein_coding protein_coding MGP_C3HHeJ_T0074086.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127493518 127515708 + MGP_C3HHeJ_P0074086 Kmt5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074087.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127493536 127494807 + Kmt5a protein_coding retained_intron MGP_C3HHeJ_T0074088.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127499037 127515157 + MGP_C3HHeJ_P0074088 Kmt5a protein_coding protein_coding MGP_C3HHeJ_T0074089.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127499049 127515740 + Kmt5a protein_coding processed_transcript MGP_C3HHeJ_T0074090.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127499252 127514218 + MGP_C3HHeJ_P0074090 Kmt5a protein_coding protein_coding MGP_C3HHeJ_T0074091.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127499328 127504836 + Kmt5a protein_coding retained_intron MGP_C3HHeJ_T0074092.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127500248 127510445 + Kmt5a protein_coding processed_transcript MGP_C3HHeJ_T0074093.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127500506 127513959 + Kmt5a protein_coding processed_transcript MGP_C3HHeJ_T0074094.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127500549 127504317 + Kmt5a protein_coding processed_transcript MGP_C3HHeJ_T0074095.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127503703 127513120 + Kmt5a protein_coding processed_transcript MGP_C3HHeJ_T0074096.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127503916 127513271 + Kmt5a protein_coding retained_intron MGP_C3HHeJ_T0074097.1 MGP_C3HHeJ_G0029788.1 mouse_genomes_project 5 127504703 127514165 + Kmt5a protein_coding retained_intron MGP_C3HHeJ_T0004693.1 MGP_C3HHeJ_G0004045.1 mouse_genomes_project 5 109087332 109114357 - Gm17202 antisense antisense MGP_C3HHeJ_T0075099.1 MGP_C3HHeJ_G0029975.1 mouse_genomes_project 5 143182039 143198907 + MGP_C3HHeJ_P0075099 Get4 protein_coding protein_coding MGP_C3HHeJ_T0075100.1 MGP_C3HHeJ_G0029975.1 mouse_genomes_project 5 143182085 143196860 + MGP_C3HHeJ_P0075100 Get4 protein_coding protein_coding MGP_C3HHeJ_T0075101.1 MGP_C3HHeJ_G0029975.1 mouse_genomes_project 5 143196585 143197157 + Get4 protein_coding retained_intron MGP_C3HHeJ_T0014916.1 MGP_C3HHeJ_G0013020.1 mouse_genomes_project 5 107588053 107588663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010635.1 MGP_C3HHeJ_G0008768.1 mouse_genomes_project 5 138839401 138839482 - Mir7033 miRNA miRNA MGP_C3HHeJ_T0070407.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29222131 29236596 - MGP_C3HHeJ_P0070407 Slc5a6 protein_coding protein_coding MGP_C3HHeJ_T0070408.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29222131 29237518 - MGP_C3HHeJ_P0070408 Slc5a6 protein_coding protein_coding MGP_C3HHeJ_T0070409.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29222131 29237156 - MGP_C3HHeJ_P0070409 Slc5a6 protein_coding protein_coding MGP_C3HHeJ_T0070410.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29222132 29236603 - MGP_C3HHeJ_P0070410 Slc5a6 protein_coding protein_coding MGP_C3HHeJ_T0070411.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29222982 29224089 - Slc5a6 protein_coding retained_intron MGP_C3HHeJ_T0070412.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29225446 29228698 - MGP_C3HHeJ_P0070412 Slc5a6 protein_coding protein_coding MGP_C3HHeJ_T0070413.1 MGP_C3HHeJ_G0029103.1 mouse_genomes_project 5 29229187 29236673 - MGP_C3HHeJ_P0070413 Slc5a6 protein_coding protein_coding MGP_C3HHeJ_T0001708.1 MGP_C3HHeJ_G0001632.1 mouse_genomes_project 5 106448475 106448843 - TEC TEC MGP_C3HHeJ_T0014972.1 MGP_C3HHeJ_G0013076.1 mouse_genomes_project 5 128490056 128490753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072904.1 MGP_C3HHeJ_G0029578.1 mouse_genomes_project 5 112185556 112211192 + MGP_C3HHeJ_P0072904 Ankle2 protein_coding protein_coding MGP_C3HHeJ_T0072905.1 MGP_C3HHeJ_G0029578.1 mouse_genomes_project 5 112185556 112210007 + MGP_C3HHeJ_P0072905 Ankle2 protein_coding protein_coding MGP_C3HHeJ_T0072906.1 MGP_C3HHeJ_G0029578.1 mouse_genomes_project 5 112185593 112211188 + MGP_C3HHeJ_P0072906 Ankle2 protein_coding protein_coding MGP_C3HHeJ_T0072907.1 MGP_C3HHeJ_G0029578.1 mouse_genomes_project 5 112185715 112192731 + Ankle2 protein_coding retained_intron MGP_C3HHeJ_T0072908.1 MGP_C3HHeJ_G0029578.1 mouse_genomes_project 5 112192071 112192813 + Ankle2 protein_coding retained_intron MGP_C3HHeJ_T0072909.1 MGP_C3HHeJ_G0029578.1 mouse_genomes_project 5 112205291 112207603 + Ankle2 protein_coding processed_transcript MGP_C3HHeJ_T0001507.1 MGP_C3HHeJ_G0001434.1 mouse_genomes_project 5 43379392 43381611 - TEC TEC MGP_C3HHeJ_T0001504.1 MGP_C3HHeJ_G0001431.1 mouse_genomes_project 5 43260870 43264657 - TEC TEC MGP_C3HHeJ_T0014923.1 MGP_C3HHeJ_G0013027.1 mouse_genomes_project 5 109063426 109064066 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074475.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137983937 138002076 - MGP_C3HHeJ_P0074475 Lat2 protein_coding protein_coding MGP_C3HHeJ_T0074476.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137984018 138002041 - MGP_C3HHeJ_P0074476 Lat2 protein_coding protein_coding MGP_C3HHeJ_T0074477.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137984153 137994165 - MGP_C3HHeJ_P0074477 Lat2 protein_coding protein_coding MGP_C3HHeJ_T0074478.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137984346 137991517 - MGP_C3HHeJ_P0074478 Lat2 protein_coding protein_coding MGP_C3HHeJ_T0074479.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137984484 137990962 - Lat2 protein_coding processed_transcript MGP_C3HHeJ_T0074480.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137984713 138002057 - MGP_C3HHeJ_P0074480 Lat2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074481.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137984726 137989074 - Lat2 protein_coding retained_intron MGP_C3HHeJ_T0074482.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137989922 138002036 - Lat2 protein_coding processed_transcript MGP_C3HHeJ_T0074483.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137991091 138002017 - MGP_C3HHeJ_P0074483 Lat2 protein_coding protein_coding MGP_C3HHeJ_T0074484.1 MGP_C3HHeJ_G0029854.1 mouse_genomes_project 5 137991196 137993320 - Lat2 protein_coding retained_intron MGP_C3HHeJ_T0001524.1 MGP_C3HHeJ_G0001451.1 mouse_genomes_project 5 47521317 47523802 - TEC TEC MGP_C3HHeJ_T0099429.1 MGP_C3HHeJ_G0037623.1 mouse_genomes_project 5 30423675 30423782 + Gm26335 snRNA snRNA MGP_C3HHeJ_T0008171.1 MGP_C3HHeJ_G0006650.1 mouse_genomes_project 5 108013264 108015080 + Gm42916 lincRNA lincRNA MGP_C3HHeJ_T0010575.1 MGP_C3HHeJ_G0008708.1 mouse_genomes_project 5 518110 518227 + Gm26238 miRNA miRNA MGP_C3HHeJ_T0004650.1 MGP_C3HHeJ_G0004018.1 mouse_genomes_project 5 77159823 77168214 + Hopxos antisense antisense MGP_C3HHeJ_T0071964.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81406569 81778962 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071965.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407011 82203481 + MGP_C3HHeJ_P0071965 Adgrl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071966.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407192 82095674 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071967.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407195 82095671 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071968.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407436 81454242 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071969.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407639 81868172 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071970.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407642 82199825 + MGP_C3HHeJ_P0071970 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071971.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81407680 82203492 + MGP_C3HHeJ_P0071971 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071972.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81408033 82203482 + MGP_C3HHeJ_P0071972 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071973.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81408231 81588972 + Adgrl3 protein_coding processed_transcript MGP_C3HHeJ_T0071974.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81408232 82203481 + Adgrl3 protein_coding processed_transcript MGP_C3HHeJ_T0071975.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81408250 81971703 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071976.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702445 82202194 + MGP_C3HHeJ_P0071976 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071977.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071977 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071978.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071978 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071979.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071979 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071980.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071980 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071981.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071981 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071982.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071982 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071983.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071983 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071984.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702446 82202194 + MGP_C3HHeJ_P0071984 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071985.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702454 81739242 + Adgrl3 protein_coding processed_transcript MGP_C3HHeJ_T0071986.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702484 82202063 + MGP_C3HHeJ_P0071986 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071987.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702484 82202063 + MGP_C3HHeJ_P0071987 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071988.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702484 82202063 + MGP_C3HHeJ_P0071988 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071989.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702484 82202734 + MGP_C3HHeJ_P0071989 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071990.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702509 82202563 + MGP_C3HHeJ_P0071990 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071991.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702597 82203481 + MGP_C3HHeJ_P0071991 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071992.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 81702597 82203481 + MGP_C3HHeJ_P0071992 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071993.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 82047814 82095453 + Adgrl3 protein_coding processed_transcript MGP_C3HHeJ_T0071994.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 82066880 82068231 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071995.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 82067239 82203481 + MGP_C3HHeJ_P0071995 Adgrl3 protein_coding protein_coding MGP_C3HHeJ_T0071996.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 82124746 82126828 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0071997.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 82178508 82233322 + Adgrl3 protein_coding processed_transcript MGP_C3HHeJ_T0071998.1 MGP_C3HHeJ_G0029360.1 mouse_genomes_project 5 82198407 82200442 + Adgrl3 protein_coding retained_intron MGP_C3HHeJ_T0014701.1 MGP_C3HHeJ_G0012805.1 mouse_genomes_project 5 18452802 18453177 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072114.1 MGP_C3HHeJ_G0029394.1 mouse_genomes_project 5 88493821 88500851 + MGP_C3HHeJ_P0072114 Csn3 protein_coding protein_coding MGP_C3HHeJ_T0072115.1 MGP_C3HHeJ_G0029394.1 mouse_genomes_project 5 88493849 88499061 + MGP_C3HHeJ_P0072115 Csn3 protein_coding protein_coding MGP_C3HHeJ_T0072116.1 MGP_C3HHeJ_G0029394.1 mouse_genomes_project 5 88493854 88497498 + Csn3 protein_coding retained_intron MGP_C3HHeJ_T0072117.1 MGP_C3HHeJ_G0029394.1 mouse_genomes_project 5 88493869 88497498 + Csn3 protein_coding retained_intron MGP_C3HHeJ_T0072118.1 MGP_C3HHeJ_G0029394.1 mouse_genomes_project 5 88493877 88500451 + MGP_C3HHeJ_P0072118 Csn3 protein_coding protein_coding MGP_C3HHeJ_T0072119.1 MGP_C3HHeJ_G0029394.1 mouse_genomes_project 5 88496054 88498184 + Csn3 protein_coding retained_intron MGP_C3HHeJ_T0014991.1 MGP_C3HHeJ_G0013095.1 mouse_genomes_project 5 141571710 141571945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075691.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 154938055 155189486 + MGP_C3HHeJ_P0075691 Fry protein_coding protein_coding MGP_C3HHeJ_T0075692.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 154938077 155198825 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075693.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 154938077 155195583 + MGP_C3HHeJ_P0075693 Fry protein_coding protein_coding MGP_C3HHeJ_T0075694.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155017587 155189461 + MGP_C3HHeJ_P0075694 Fry protein_coding protein_coding MGP_C3HHeJ_T0075695.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155091838 155094175 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075696.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155094036 155353129 + MGP_C3HHeJ_P0075696 Fry protein_coding protein_coding MGP_C3HHeJ_T0075697.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155138410 155242215 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075698.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155251469 155254140 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075699.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155282003 155285594 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075700.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155293623 155353129 + MGP_C3HHeJ_P0075700 Fry protein_coding protein_coding MGP_C3HHeJ_T0075701.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155307624 155353129 + MGP_C3HHeJ_P0075701 Fry protein_coding protein_coding MGP_C3HHeJ_T0075702.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155314242 155352180 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075703.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155317177 155320832 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075704.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155342581 155345199 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075705.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155345510 155347388 + Fry protein_coding retained_intron MGP_C3HHeJ_T0075706.1 MGP_C3HHeJ_G0030104.1 mouse_genomes_project 5 155351253 155353011 + Fry protein_coding retained_intron MGP_C3HHeJ_T0074693.1 MGP_C3HHeJ_G0029896.1 mouse_genomes_project 5 139675937 139680304 + MGP_C3HHeJ_P0074693 Alkbh4 protein_coding protein_coding MGP_C3HHeJ_T0074694.1 MGP_C3HHeJ_G0029896.1 mouse_genomes_project 5 139675945 139681404 + MGP_C3HHeJ_P0074694 Alkbh4 protein_coding protein_coding MGP_C3HHeJ_T0074695.1 MGP_C3HHeJ_G0029896.1 mouse_genomes_project 5 139675949 139680570 + MGP_C3HHeJ_P0074695 Alkbh4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074696.1 MGP_C3HHeJ_G0029896.1 mouse_genomes_project 5 139675993 139680295 + MGP_C3HHeJ_P0074696 Alkbh4 protein_coding protein_coding MGP_C3HHeJ_T0074697.1 MGP_C3HHeJ_G0029896.1 mouse_genomes_project 5 139678572 139681407 + MGP_C3HHeJ_P0074697 Alkbh4 protein_coding protein_coding MGP_C3HHeJ_T0001654.1 MGP_C3HHeJ_G0001578.1 mouse_genomes_project 5 73247808 73248801 + TEC TEC MGP_C3HHeJ_T0014890.1 MGP_C3HHeJ_G0012994.1 mouse_genomes_project 5 93837947 93838521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074391.1 MGP_C3HHeJ_G0029846.1 mouse_genomes_project 5 137475252 137507882 - MGP_C3HHeJ_P0074391 Wbscr16 protein_coding protein_coding MGP_C3HHeJ_T0074392.1 MGP_C3HHeJ_G0029846.1 mouse_genomes_project 5 137482898 137499545 - Wbscr16 protein_coding retained_intron MGP_C3HHeJ_T0074393.1 MGP_C3HHeJ_G0029846.1 mouse_genomes_project 5 137494565 137497970 - Wbscr16 protein_coding retained_intron MGP_C3HHeJ_T0004652.1 MGP_C3HHeJ_G0004020.1 mouse_genomes_project 5 82198755 82205259 - Gm16054 antisense antisense MGP_C3HHeJ_T0004740.1 MGP_C3HHeJ_G0004078.1 mouse_genomes_project 5 123084495 123085557 - Gm15690 antisense antisense MGP_C3HHeJ_T0008365.1 MGP_C3HHeJ_G0006780.1 mouse_genomes_project 5 153558587 153576194 + Gm15407 lincRNA lincRNA MGP_C3HHeJ_T0004646.1 MGP_C3HHeJ_G0004015.1 mouse_genomes_project 5 75159675 75160275 - Gm42802 antisense antisense MGP_C3HHeJ_T0073560.1 MGP_C3HHeJ_G0029704.1 mouse_genomes_project 5 123229796 123245654 + MGP_C3HHeJ_P0073560 Ddx54 protein_coding protein_coding MGP_C3HHeJ_T0073561.1 MGP_C3HHeJ_G0029704.1 mouse_genomes_project 5 123230184 123244689 + Ddx54 protein_coding retained_intron MGP_C3HHeJ_T0073562.1 MGP_C3HHeJ_G0029704.1 mouse_genomes_project 5 123235961 123238856 + Ddx54 protein_coding retained_intron MGP_C3HHeJ_T0073563.1 MGP_C3HHeJ_G0029704.1 mouse_genomes_project 5 123238384 123238855 + Ddx54 protein_coding retained_intron MGP_C3HHeJ_T0073161.1 MGP_C3HHeJ_G0029627.1 mouse_genomes_project 5 116307700 116311948 - MGP_C3HHeJ_P0073161 Alkbh2 protein_coding protein_coding MGP_C3HHeJ_T0073162.1 MGP_C3HHeJ_G0029627.1 mouse_genomes_project 5 116307709 116311988 - MGP_C3HHeJ_P0073162 Alkbh2 protein_coding protein_coding MGP_C3HHeJ_T0073163.1 MGP_C3HHeJ_G0029627.1 mouse_genomes_project 5 116311377 116311953 - MGP_C3HHeJ_P0073163 Alkbh2 protein_coding protein_coding MGP_C3HHeJ_T0069747.1 MGP_C3HHeJ_G0028980.1 mouse_genomes_project 5 5082164 5103841 + MGP_C3HHeJ_P0069747 Steap4 protein_coding protein_coding MGP_C3HHeJ_T0074406.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570693 137652014 - MGP_C3HHeJ_P0074406 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074407.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570696 137652001 - MGP_C3HHeJ_P0074407 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074408.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570696 137652001 - MGP_C3HHeJ_P0074408 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074409.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570698 137651973 - MGP_C3HHeJ_P0074409 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074410.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570701 137631776 - MGP_C3HHeJ_P0074410 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074411.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570701 137651973 - MGP_C3HHeJ_P0074411 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074412.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570702 137613182 - Gtf2i protein_coding processed_transcript MGP_C3HHeJ_T0074413.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570702 137631776 - MGP_C3HHeJ_P0074413 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074414.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570702 137631776 - MGP_C3HHeJ_P0074414 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074415.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137570702 137631776 - MGP_C3HHeJ_P0074415 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074416.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137571356 137576422 - MGP_C3HHeJ_P0074416 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074417.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137571702 137575271 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0074418.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137572372 137631771 - MGP_C3HHeJ_P0074418 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074419.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137572514 137573905 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0074420.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137573496 137577612 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0074421.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137575611 137576604 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0074422.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137588523 137605969 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0074423.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137588549 137631721 - MGP_C3HHeJ_P0074423 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074424.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137590736 137592065 - Gtf2i protein_coding processed_transcript MGP_C3HHeJ_T0074425.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137591830 137599135 - Gtf2i protein_coding processed_transcript MGP_C3HHeJ_T0074426.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137597051 137608375 - Gtf2i protein_coding processed_transcript MGP_C3HHeJ_T0074427.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137620229 137651759 - MGP_C3HHeJ_P0074427 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074428.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137620260 137647751 - MGP_C3HHeJ_P0074428 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074429.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137620260 137648044 - MGP_C3HHeJ_P0074429 Gtf2i protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074430.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137620286 137651973 - MGP_C3HHeJ_P0074430 Gtf2i protein_coding protein_coding MGP_C3HHeJ_T0074431.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137620340 137651973 - MGP_C3HHeJ_P0074431 Gtf2i protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074432.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137622546 137642633 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0074433.1 MGP_C3HHeJ_G0029849.1 mouse_genomes_project 5 137631173 137633337 - Gtf2i protein_coding retained_intron MGP_C3HHeJ_T0001567.1 MGP_C3HHeJ_G0001493.1 mouse_genomes_project 5 54965496 54969200 - TEC TEC MGP_C3HHeJ_T0075653.1 MGP_C3HHeJ_G0030097.1 mouse_genomes_project 5 154045565 154069140 + MGP_C3HHeJ_P0075653 Alox5ap protein_coding protein_coding MGP_C3HHeJ_T0075654.1 MGP_C3HHeJ_G0030097.1 mouse_genomes_project 5 154060101 154068840 + MGP_C3HHeJ_P0075654 Alox5ap protein_coding protein_coding MGP_C3HHeJ_T0075655.1 MGP_C3HHeJ_G0030097.1 mouse_genomes_project 5 154068504 154069134 + Alox5ap protein_coding processed_transcript MGP_C3HHeJ_T0001733.1 MGP_C3HHeJ_G0001657.1 mouse_genomes_project 5 115423767 115424967 - TEC TEC MGP_C3HHeJ_T0001825.1 MGP_C3HHeJ_G0001748.1 mouse_genomes_project 5 135279006 135285836 - TEC TEC MGP_C3HHeJ_T0001860.1 MGP_C3HHeJ_G0001782.1 mouse_genomes_project 5 147615338 147618080 + TEC TEC MGP_C3HHeJ_T0001694.1 MGP_C3HHeJ_G0001618.1 mouse_genomes_project 5 101702636 101704472 + TEC TEC MGP_C3HHeJ_T0072052.1 MGP_C3HHeJ_G0029376.1 mouse_genomes_project 5 87442508 87452397 - MGP_C3HHeJ_P0072052 Ugt2b1 protein_coding protein_coding MGP_C3HHeJ_T0071062.1 MGP_C3HHeJ_G0029204.1 mouse_genomes_project 5 36315841 36319909 - MGP_C3HHeJ_P0071062 Msx1 protein_coding protein_coding MGP_C3HHeJ_T0071063.1 MGP_C3HHeJ_G0029204.1 mouse_genomes_project 5 36318049 36319908 - Msx1 protein_coding retained_intron MGP_C3HHeJ_T0001517.1 MGP_C3HHeJ_G0001444.1 mouse_genomes_project 5 45499808 45501662 + TEC TEC MGP_C3HHeJ_T0001658.1 MGP_C3HHeJ_G0001582.1 mouse_genomes_project 5 74056614 74058328 - TEC TEC MGP_C3HHeJ_T0072591.1 MGP_C3HHeJ_G0029507.1 mouse_genomes_project 5 105449599 105460366 - MGP_C3HHeJ_P0072591 Gm17660 protein_coding protein_coding MGP_C3HHeJ_T0072592.1 MGP_C3HHeJ_G0029507.1 mouse_genomes_project 5 105449625 105460350 - MGP_C3HHeJ_P0072592 Gm17660 protein_coding protein_coding MGP_C3HHeJ_T0072593.1 MGP_C3HHeJ_G0029507.1 mouse_genomes_project 5 105450783 105460366 - MGP_C3HHeJ_P0072593 Gm17660 protein_coding protein_coding MGP_C3HHeJ_T0074638.1 MGP_C3HHeJ_G0029887.1 mouse_genomes_project 5 139419746 139447436 - MGP_C3HHeJ_P0074638 Ywhag protein_coding protein_coding MGP_C3HHeJ_T0074639.1 MGP_C3HHeJ_G0029887.1 mouse_genomes_project 5 139419746 139447391 - MGP_C3HHeJ_P0074639 Ywhag protein_coding protein_coding MGP_C3HHeJ_T0074640.1 MGP_C3HHeJ_G0029887.1 mouse_genomes_project 5 139442603 139447434 - Ywhag protein_coding retained_intron MGP_C3HHeJ_T0074641.1 MGP_C3HHeJ_G0029887.1 mouse_genomes_project 5 139442608 139447453 - Ywhag protein_coding processed_transcript MGP_C3HHeJ_T0074642.1 MGP_C3HHeJ_G0029887.1 mouse_genomes_project 5 139442684 139447387 - Ywhag protein_coding processed_transcript MGP_C3HHeJ_T0073290.1 MGP_C3HHeJ_G0029652.1 mouse_genomes_project 5 117401333 117412089 - Acads protein_coding retained_intron MGP_C3HHeJ_T0073291.1 MGP_C3HHeJ_G0029652.1 mouse_genomes_project 5 117401333 117412148 - MGP_C3HHeJ_P0073291 Acads protein_coding protein_coding MGP_C3HHeJ_T0073292.1 MGP_C3HHeJ_G0029652.1 mouse_genomes_project 5 117403030 117412112 - Acads protein_coding processed_transcript MGP_C3HHeJ_T0073293.1 MGP_C3HHeJ_G0029652.1 mouse_genomes_project 5 117403818 117412077 - Acads protein_coding retained_intron MGP_C3HHeJ_T0004773.1 MGP_C3HHeJ_G0004102.1 mouse_genomes_project 5 133420687 133423302 - Gm42469 antisense antisense MGP_C3HHeJ_T0001604.1 MGP_C3HHeJ_G0001529.1 mouse_genomes_project 5 65237815 65239367 - TEC TEC MGP_C3HHeJ_T0074330.1 MGP_C3HHeJ_G0029834.1 mouse_genomes_project 5 133266190 133329618 + MGP_C3HHeJ_P0074330 Tpst1 protein_coding protein_coding MGP_C3HHeJ_T0074331.1 MGP_C3HHeJ_G0029834.1 mouse_genomes_project 5 133272234 133329618 + MGP_C3HHeJ_P0074331 Tpst1 protein_coding protein_coding MGP_C3HHeJ_T0074332.1 MGP_C3HHeJ_G0029834.1 mouse_genomes_project 5 133287391 133295833 + MGP_C3HHeJ_P0074332 Tpst1 protein_coding protein_coding MGP_C3HHeJ_T0074333.1 MGP_C3HHeJ_G0029834.1 mouse_genomes_project 5 133327845 133329601 + Tpst1 protein_coding retained_intron MGP_C3HHeJ_T0072123.1 MGP_C3HHeJ_G0029398.1 mouse_genomes_project 5 88569371 88576983 + MGP_C3HHeJ_P0072123 Smr3a protein_coding protein_coding MGP_C3HHeJ_T0072124.1 MGP_C3HHeJ_G0029398.1 mouse_genomes_project 5 88569375 88576986 + MGP_C3HHeJ_P0072124 Smr3a protein_coding protein_coding MGP_C3HHeJ_T0014722.1 MGP_C3HHeJ_G0012826.1 mouse_genomes_project 5 21147451 21178973 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014802.1 MGP_C3HHeJ_G0012906.1 mouse_genomes_project 5 54896625 54897430 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014904.1 MGP_C3HHeJ_G0013008.1 mouse_genomes_project 5 102824812 102825611 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014750.1 MGP_C3HHeJ_G0012854.1 mouse_genomes_project 5 28423940 28424307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074702.1 MGP_C3HHeJ_G0029898.1 mouse_genomes_project 5 139715755 139737261 - MGP_C3HHeJ_P0074702 Prkrip1 protein_coding protein_coding MGP_C3HHeJ_T0074703.1 MGP_C3HHeJ_G0029898.1 mouse_genomes_project 5 139718705 139737208 - Prkrip1 protein_coding processed_transcript MGP_C3HHeJ_T0074704.1 MGP_C3HHeJ_G0029898.1 mouse_genomes_project 5 139719043 139736120 - MGP_C3HHeJ_P0074704 Prkrip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074705.1 MGP_C3HHeJ_G0029898.1 mouse_genomes_project 5 139719048 139737206 - MGP_C3HHeJ_P0074705 Prkrip1 protein_coding protein_coding MGP_C3HHeJ_T0075746.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155931258 156085432 - MGP_C3HHeJ_P0075746 Stard13 protein_coding protein_coding MGP_C3HHeJ_T0075747.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155933285 156085332 - MGP_C3HHeJ_P0075747 Stard13 protein_coding protein_coding MGP_C3HHeJ_T0075748.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155957087 156085438 - Stard13 protein_coding processed_transcript MGP_C3HHeJ_T0075749.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155957188 155982668 - Stard13 protein_coding processed_transcript MGP_C3HHeJ_T0075751.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155957191 156130268 - MGP_C3HHeJ_P0075751 Stard13 protein_coding protein_coding MGP_C3HHeJ_T0075752.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155957238 155989802 - Stard13 protein_coding processed_transcript MGP_C3HHeJ_T0075753.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155964674 156085388 - Stard13 protein_coding retained_intron MGP_C3HHeJ_T0075754.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155966718 156130330 - MGP_C3HHeJ_P0075754 Stard13 protein_coding protein_coding MGP_C3HHeJ_T0075755.1 MGP_C3HHeJ_G0030111.1 mouse_genomes_project 5 155989475 156002774 - Stard13 protein_coding processed_transcript MGP_C3HHeJ_T0073431.1 MGP_C3HHeJ_G0029677.1 mouse_genomes_project 5 118827735 118845461 - MGP_C3HHeJ_P0073431 Srrm4 protein_coding protein_coding MGP_C3HHeJ_T0073432.1 MGP_C3HHeJ_G0029677.1 mouse_genomes_project 5 118827745 118845585 - Srrm4 protein_coding retained_intron MGP_C3HHeJ_T0073433.1 MGP_C3HHeJ_G0029677.1 mouse_genomes_project 5 118827746 118991709 - MGP_C3HHeJ_P0073433 Srrm4 protein_coding protein_coding MGP_C3HHeJ_T0073434.1 MGP_C3HHeJ_G0029677.1 mouse_genomes_project 5 118868667 118869446 - Srrm4 protein_coding retained_intron MGP_C3HHeJ_T0001864.1 MGP_C3HHeJ_G0001786.1 mouse_genomes_project 5 148431271 148433066 + TEC TEC MGP_C3HHeJ_T0074950.1 MGP_C3HHeJ_G0029945.1 mouse_genomes_project 5 141656272 141666968 + MGP_C3HHeJ_P0074950 Azgp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074951.1 MGP_C3HHeJ_G0029945.1 mouse_genomes_project 5 141656291 141666968 + MGP_C3HHeJ_P0074951 Azgp1 protein_coding protein_coding MGP_C3HHeJ_T0074952.1 MGP_C3HHeJ_G0029945.1 mouse_genomes_project 5 141656320 141662344 + Azgp1 protein_coding retained_intron MGP_C3HHeJ_T0008278.1 MGP_C3HHeJ_G0006717.1 mouse_genomes_project 5 126167048 126169209 - Gm43409 lincRNA lincRNA MGP_C3HHeJ_T0001511.1 MGP_C3HHeJ_G0001438.1 mouse_genomes_project 5 44336652 44337659 - TEC TEC MGP_C3HHeJ_T0075564.1 MGP_C3HHeJ_G0030085.1 mouse_genomes_project 5 151966229 152041670 - MGP_C3HHeJ_P0075564 Flt3 protein_coding protein_coding MGP_C3HHeJ_T0075565.1 MGP_C3HHeJ_G0030085.1 mouse_genomes_project 5 152000715 152041670 - Flt3 protein_coding processed_transcript MGP_C3HHeJ_T0073370.1 MGP_C3HHeJ_G0029668.1 mouse_genomes_project 5 117897524 117902557 + MGP_C3HHeJ_P0073370 Rplp0 protein_coding protein_coding MGP_C3HHeJ_T0073371.1 MGP_C3HHeJ_G0029668.1 mouse_genomes_project 5 117897635 117900047 + MGP_C3HHeJ_P0073371 Rplp0 protein_coding protein_coding MGP_C3HHeJ_T0073372.1 MGP_C3HHeJ_G0029668.1 mouse_genomes_project 5 117897680 117899904 + Rplp0 protein_coding retained_intron MGP_C3HHeJ_T0001812.1 MGP_C3HHeJ_G0001735.1 mouse_genomes_project 5 134212971 134214710 - TEC TEC MGP_C3HHeJ_T0073716.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989458 124995362 + MGP_C3HHeJ_P0073716 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073717.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989464 124993801 + MGP_C3HHeJ_P0073717 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073718.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989487 124993413 + MGP_C3HHeJ_P0073718 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073719.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989490 125003647 + MGP_C3HHeJ_P0073719 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073720.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989539 124993544 + MGP_C3HHeJ_P0073720 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073721.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989668 124991261 + Myl2 protein_coding processed_transcript MGP_C3HHeJ_T0073722.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124989892 124993396 + MGP_C3HHeJ_P0073722 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073723.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124990087 124992436 + MGP_C3HHeJ_P0073723 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073724.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124990304 124993214 + MGP_C3HHeJ_P0073724 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0073725.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124991686 124995356 + Myl2 protein_coding processed_transcript MGP_C3HHeJ_T0073726.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124991688 124995362 + Myl2 protein_coding processed_transcript MGP_C3HHeJ_T0073727.1 MGP_C3HHeJ_G0029734.1 mouse_genomes_project 5 124992420 124993511 + MGP_C3HHeJ_P0073727 Myl2 protein_coding protein_coding MGP_C3HHeJ_T0070282.1 MGP_C3HHeJ_G0029080.1 mouse_genomes_project 5 28263302 28265796 - MGP_C3HHeJ_P0070282 3110082J24Rik protein_coding protein_coding MGP_C3HHeJ_T0070283.1 MGP_C3HHeJ_G0029080.1 mouse_genomes_project 5 28263607 28265069 - MGP_C3HHeJ_P0070283 3110082J24Rik protein_coding protein_coding MGP_C3HHeJ_T0008341.1 MGP_C3HHeJ_G0006759.1 mouse_genomes_project 5 144574014 144574921 - Gm42808 lincRNA lincRNA MGP_C3HHeJ_T0008028.1 MGP_C3HHeJ_G0006537.1 mouse_genomes_project 5 37997920 38017639 + Gm42524 lincRNA lincRNA MGP_C3HHeJ_T0102050.1 MGP_C3HHeJ_G0040015.1 mouse_genomes_project 5 111237301 111243064 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004712.1 MGP_C3HHeJ_G0004061.1 mouse_genomes_project 5 117011361 117012608 - 4930515G01Rik antisense antisense MGP_C3HHeJ_T0075509.1 MGP_C3HHeJ_G0030068.1 mouse_genomes_project 5 150528122 150597050 + MGP_C3HHeJ_P0075509 protein_coding protein_coding MGP_C3HHeJ_T0010628.1 MGP_C3HHeJ_G0008761.1 mouse_genomes_project 5 126534901 126534960 - Mir7647 miRNA miRNA MGP_C3HHeJ_T0001634.1 MGP_C3HHeJ_G0001559.1 mouse_genomes_project 5 67639521 67643202 + TEC TEC MGP_C3HHeJ_T0008195.1 MGP_C3HHeJ_G0006665.1 mouse_genomes_project 5 112758261 112759523 + Gm26515 lincRNA lincRNA MGP_C3HHeJ_T0014709.1 MGP_C3HHeJ_G0012813.1 mouse_genomes_project 5 19473845 19474128 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004620.1 MGP_C3HHeJ_G0003992.1 mouse_genomes_project 5 47485841 47494947 + Gm20700 antisense antisense MGP_C3HHeJ_T0008280.1 MGP_C3HHeJ_G0006719.1 mouse_genomes_project 5 127056261 127081174 - Gm43661 lincRNA lincRNA MGP_C3HHeJ_T0010614.1 MGP_C3HHeJ_G0008747.1 mouse_genomes_project 5 105428425 105428486 + Mir5619 miRNA miRNA MGP_C3HHeJ_T0071881.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76569024 76613815 + MGP_C3HHeJ_P0071881 Exoc1 protein_coding protein_coding MGP_C3HHeJ_T0071882.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76569036 76613806 + MGP_C3HHeJ_P0071882 Exoc1 protein_coding protein_coding MGP_C3HHeJ_T0071883.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76569041 76579449 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0071884.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76569057 76602416 + Exoc1 protein_coding processed_transcript MGP_C3HHeJ_T0071885.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76569071 76580822 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0071886.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76569071 76613808 + MGP_C3HHeJ_P0071886 Exoc1 protein_coding protein_coding MGP_C3HHeJ_T0071887.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76581657 76589229 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0071888.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76592356 76595276 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0071889.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76600982 76610724 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0071890.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76601849 76611537 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0071891.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76601987 76610485 + MGP_C3HHeJ_P0071891 Exoc1 protein_coding protein_coding MGP_C3HHeJ_T0071892.1 MGP_C3HHeJ_G0029345.1 mouse_genomes_project 5 76611402 76613510 + Exoc1 protein_coding retained_intron MGP_C3HHeJ_T0017912.1 MGP_C3HHeJ_G0015356.1 mouse_genomes_project 5 42680901 42703350 - Gm42716 processed_transcript sense_intronic MGP_C3HHeJ_T0017913.1 MGP_C3HHeJ_G0015356.1 mouse_genomes_project 5 42698055 42703294 - Gm42716 processed_transcript sense_intronic MGP_C3HHeJ_T0017914.1 MGP_C3HHeJ_G0015356.1 mouse_genomes_project 5 42702845 42704615 - Gm42716 processed_transcript retained_intron MGP_C3HHeJ_T0001622.1 MGP_C3HHeJ_G0001547.1 mouse_genomes_project 5 66209982 66213023 - TEC TEC MGP_C3HHeJ_T0015024.1 MGP_C3HHeJ_G0013128.1 mouse_genomes_project 5 151720569 151721061 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008104.1 MGP_C3HHeJ_G0006600.1 mouse_genomes_project 5 82540115 82542418 - 1700031L13Rik lincRNA lincRNA MGP_C3HHeJ_T0008105.1 MGP_C3HHeJ_G0006600.1 mouse_genomes_project 5 82540134 82542421 - 1700031L13Rik lincRNA lincRNA MGP_C3HHeJ_T0008106.1 MGP_C3HHeJ_G0006600.1 mouse_genomes_project 5 82540144 82541053 - 1700031L13Rik lincRNA lincRNA MGP_C3HHeJ_T0008107.1 MGP_C3HHeJ_G0006600.1 mouse_genomes_project 5 82540393 82541045 - 1700031L13Rik lincRNA lincRNA MGP_C3HHeJ_T0099424.1 MGP_C3HHeJ_G0037618.1 mouse_genomes_project 5 21738027 21738182 - Gm22054 snRNA snRNA MGP_C3HHeJ_T0073851.1 MGP_C3HHeJ_G0029752.1 mouse_genomes_project 5 125802492 125823256 + MGP_C3HHeJ_P0073851 Rnf34 protein_coding protein_coding MGP_C3HHeJ_T0073852.1 MGP_C3HHeJ_G0029752.1 mouse_genomes_project 5 125802601 125816155 + MGP_C3HHeJ_P0073852 Rnf34 protein_coding protein_coding MGP_C3HHeJ_T0099463.1 MGP_C3HHeJ_G0037657.1 mouse_genomes_project 5 97011341 97011448 + Gm25937 snRNA snRNA MGP_C3HHeJ_T0008285.1 MGP_C3HHeJ_G0006723.1 mouse_genomes_project 5 128998664 129023933 + 1700048F04Rik lincRNA lincRNA MGP_C3HHeJ_T0014986.1 MGP_C3HHeJ_G0013090.1 mouse_genomes_project 5 140919195 140919442 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001765.1 MGP_C3HHeJ_G0001689.1 mouse_genomes_project 5 124181273 124183130 + TEC TEC MGP_C3HHeJ_T0073254.1 MGP_C3HHeJ_G0029643.1 mouse_genomes_project 5 117047630 117062946 - MGP_C3HHeJ_P0073254 Gm20499 protein_coding protein_coding MGP_C3HHeJ_T0001496.1 MGP_C3HHeJ_G0001423.1 mouse_genomes_project 5 42719609 42721300 + TEC TEC MGP_C3HHeJ_T0001782.1 MGP_C3HHeJ_G0001706.1 mouse_genomes_project 5 126407405 126408272 + TEC TEC MGP_C3HHeJ_T0014694.1 MGP_C3HHeJ_G0012798.1 mouse_genomes_project 5 15029998 15031061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098510.1 MGP_C3HHeJ_G0036714.1 mouse_genomes_project 5 147054349 147058646 - D430018E03Rik sense_intronic sense_intronic MGP_C3HHeJ_T0004703.1 MGP_C3HHeJ_G0004055.1 mouse_genomes_project 5 113371155 113371930 - Gm43118 antisense antisense MGP_C3HHeJ_T0001438.1 MGP_C3HHeJ_G0001368.1 mouse_genomes_project 5 21250473 21251254 + TEC TEC MGP_C3HHeJ_T0074681.1 MGP_C3HHeJ_G0029894.1 mouse_genomes_project 5 139656381 139662691 + MGP_C3HHeJ_P0074681 Polr2j protein_coding protein_coding MGP_C3HHeJ_T0074682.1 MGP_C3HHeJ_G0029894.1 mouse_genomes_project 5 139656381 139662467 + MGP_C3HHeJ_P0074682 Polr2j protein_coding protein_coding MGP_C3HHeJ_T0074683.1 MGP_C3HHeJ_G0029894.1 mouse_genomes_project 5 139656452 139662680 + MGP_C3HHeJ_P0074683 Polr2j protein_coding protein_coding MGP_C3HHeJ_T0014800.1 MGP_C3HHeJ_G0012904.1 mouse_genomes_project 5 54759884 54760191 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073694.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124674278 124697930 - MGP_C3HHeJ_P0073694 Sh2b3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073695.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124674438 124697964 - MGP_C3HHeJ_P0073695 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0073696.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124675102 124687521 - MGP_C3HHeJ_P0073696 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0073697.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124675800 124696137 - MGP_C3HHeJ_P0073697 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0073698.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124676006 124697955 - MGP_C3HHeJ_P0073698 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0073699.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124676080 124697922 - MGP_C3HHeJ_P0073699 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0073700.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124677897 124698751 - MGP_C3HHeJ_P0073700 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0073701.1 MGP_C3HHeJ_G0029731.1 mouse_genomes_project 5 124687347 124696297 - MGP_C3HHeJ_P0073701 Sh2b3 protein_coding protein_coding MGP_C3HHeJ_T0001402.1 MGP_C3HHeJ_G0001332.1 mouse_genomes_project 5 4366894 4368439 - TEC TEC MGP_C3HHeJ_T0074130.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127688902 127697763 + Atp6v0a2 protein_coding processed_transcript MGP_C3HHeJ_T0074131.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127689378 127724394 + MGP_C3HHeJ_P0074131 Atp6v0a2 protein_coding protein_coding MGP_C3HHeJ_T0074132.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127689391 127722079 + MGP_C3HHeJ_P0074132 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074133.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127689495 127701837 + Atp6v0a2 protein_coding retained_intron MGP_C3HHeJ_T0074134.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127714063 127717824 + Atp6v0a2 protein_coding processed_transcript MGP_C3HHeJ_T0074135.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127715636 127723540 + Atp6v0a2 protein_coding retained_intron MGP_C3HHeJ_T0074136.1 MGP_C3HHeJ_G0029796.1 mouse_genomes_project 5 127718127 127721756 + MGP_C3HHeJ_P0074136 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074388.1 MGP_C3HHeJ_G0029845.1 mouse_genomes_project 5 137419558 137471534 + MGP_C3HHeJ_P0074388 Gatsl2 protein_coding protein_coding MGP_C3HHeJ_T0074389.1 MGP_C3HHeJ_G0029845.1 mouse_genomes_project 5 137419850 137471521 + Gatsl2 protein_coding processed_transcript MGP_C3HHeJ_T0074390.1 MGP_C3HHeJ_G0029845.1 mouse_genomes_project 5 137462046 137464635 + Gatsl2 protein_coding retained_intron MGP_C3HHeJ_T0099495.1 MGP_C3HHeJ_G0037689.1 mouse_genomes_project 5 148213910 148214014 + Gm24311 snRNA snRNA MGP_C3HHeJ_T0072279.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93089790 93118263 - MGP_C3HHeJ_P0072279 Sdad1 protein_coding protein_coding MGP_C3HHeJ_T0072280.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93092522 93118133 - MGP_C3HHeJ_P0072280 Sdad1 protein_coding protein_coding MGP_C3HHeJ_T0072281.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93099060 93104378 - Sdad1 protein_coding retained_intron MGP_C3HHeJ_T0072282.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93099887 93108506 - Sdad1 protein_coding retained_intron MGP_C3HHeJ_T0072283.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93109824 93118228 - Sdad1 protein_coding retained_intron MGP_C3HHeJ_T0072284.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93111844 93112894 - Sdad1 protein_coding retained_intron MGP_C3HHeJ_T0072285.1 MGP_C3HHeJ_G0029446.1 mouse_genomes_project 5 93113970 93118719 - MGP_C3HHeJ_P0072285 Sdad1 protein_coding protein_coding MGP_C3HHeJ_T0075664.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154322103 154416001 + MGP_C3HHeJ_P0075664 Wdr95 protein_coding protein_coding MGP_C3HHeJ_T0075665.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154323111 154364587 + Wdr95 protein_coding retained_intron MGP_C3HHeJ_T0075666.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154323117 154403143 + MGP_C3HHeJ_P0075666 Wdr95 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075667.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154323159 154365656 + Wdr95 protein_coding retained_intron MGP_C3HHeJ_T0075668.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154323159 154416001 + MGP_C3HHeJ_P0075668 Wdr95 protein_coding protein_coding MGP_C3HHeJ_T0075669.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154330823 154364587 + Wdr95 protein_coding retained_intron MGP_C3HHeJ_T0075670.1 MGP_C3HHeJ_G0030100.1 mouse_genomes_project 5 154383923 154391547 + Wdr95 protein_coding retained_intron MGP_C3HHeJ_T0014988.1 MGP_C3HHeJ_G0013092.1 mouse_genomes_project 5 141244266 141244804 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001555.1 MGP_C3HHeJ_G0001481.1 mouse_genomes_project 5 50883435 50887618 - TEC TEC MGP_C3HHeJ_T0001659.1 MGP_C3HHeJ_G0001583.1 mouse_genomes_project 5 74145000 74148936 - TEC TEC MGP_C3HHeJ_T0014669.1 MGP_C3HHeJ_G0012773.1 mouse_genomes_project 5 3731191 3731480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014778.1 MGP_C3HHeJ_G0012882.1 mouse_genomes_project 5 40557847 40559123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001711.1 MGP_C3HHeJ_G0001635.1 mouse_genomes_project 5 108303403 108306312 - TEC TEC MGP_C3HHeJ_T0001638.1 MGP_C3HHeJ_G0001563.1 mouse_genomes_project 5 68895113 68896144 - TEC TEC MGP_C3HHeJ_T0069813.1 MGP_C3HHeJ_G0028989.1 mouse_genomes_project 5 6127973 6159139 - MGP_C3HHeJ_P0069813 Crot protein_coding protein_coding MGP_C3HHeJ_T0069814.1 MGP_C3HHeJ_G0028989.1 mouse_genomes_project 5 6135356 6143903 - Crot protein_coding processed_transcript MGP_C3HHeJ_T0069815.1 MGP_C3HHeJ_G0028989.1 mouse_genomes_project 5 6147939 6158857 - Crot protein_coding retained_intron MGP_C3HHeJ_T0001707.1 MGP_C3HHeJ_G0001631.1 mouse_genomes_project 5 105834895 105836201 + TEC TEC MGP_C3HHeJ_T0008187.1 MGP_C3HHeJ_G0006661.1 mouse_genomes_project 5 112213702 112224088 + Gm26718 lincRNA lincRNA MGP_C3HHeJ_T0070272.1 MGP_C3HHeJ_G0029078.1 mouse_genomes_project 5 28163026 28171489 + MGP_C3HHeJ_P0070272 Il6 protein_coding protein_coding MGP_C3HHeJ_T0070273.1 MGP_C3HHeJ_G0029078.1 mouse_genomes_project 5 28163074 28171056 + MGP_C3HHeJ_P0070273 Il6 protein_coding protein_coding MGP_C3HHeJ_T0001653.1 MGP_C3HHeJ_G0001577.1 mouse_genomes_project 5 73244516 73245035 - TEC TEC MGP_C3HHeJ_T0010629.1 MGP_C3HHeJ_G0008762.1 mouse_genomes_project 5 127017842 127017921 + Mir7032 miRNA miRNA MGP_C3HHeJ_T0001512.1 MGP_C3HHeJ_G0001439.1 mouse_genomes_project 5 44375409 44377439 + TEC TEC MGP_C3HHeJ_T0008041.1 MGP_C3HHeJ_G0006548.1 mouse_genomes_project 5 43617032 43629797 + 4930431F12Rik lincRNA lincRNA MGP_C3HHeJ_T0071944.1 MGP_C3HHeJ_G0029353.1 mouse_genomes_project 5 77076097 77122083 + MGP_C3HHeJ_P0071944 Thegl protein_coding protein_coding MGP_C3HHeJ_T0071945.1 MGP_C3HHeJ_G0029353.1 mouse_genomes_project 5 77076097 77122090 + MGP_C3HHeJ_P0071945 Thegl protein_coding protein_coding MGP_C3HHeJ_T0071946.1 MGP_C3HHeJ_G0029353.1 mouse_genomes_project 5 77097660 77108104 + MGP_C3HHeJ_P0071946 Thegl protein_coding protein_coding MGP_C3HHeJ_T0014962.1 MGP_C3HHeJ_G0013066.1 mouse_genomes_project 5 123262096 123262307 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073255.1 MGP_C3HHeJ_G0029644.1 mouse_genomes_project 5 117128136 117155691 + MGP_C3HHeJ_P0073255 4930519G04Rik protein_coding protein_coding MGP_C3HHeJ_T0073257.1 MGP_C3HHeJ_G0029644.1 mouse_genomes_project 5 117133986 117150962 + 4930519G04Rik protein_coding retained_intron MGP_C3HHeJ_T0073258.1 MGP_C3HHeJ_G0029644.1 mouse_genomes_project 5 117137769 117154033 + MGP_C3HHeJ_P0073258 4930519G04Rik protein_coding protein_coding MGP_C3HHeJ_T0073259.1 MGP_C3HHeJ_G0029644.1 mouse_genomes_project 5 117139738 117154033 + MGP_C3HHeJ_P0073259 4930519G04Rik protein_coding protein_coding MGP_C3HHeJ_T0001610.1 MGP_C3HHeJ_G0001535.1 mouse_genomes_project 5 65505838 65510112 + TEC TEC MGP_C3HHeJ_T0075505.1 MGP_C3HHeJ_G0030067.1 mouse_genomes_project 5 150366719 150410822 - MGP_C3HHeJ_P0075505 protein_coding protein_coding MGP_C3HHeJ_T0075506.1 MGP_C3HHeJ_G0030067.1 mouse_genomes_project 5 150372249 150410783 - MGP_C3HHeJ_P0075506 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075507.1 MGP_C3HHeJ_G0030067.1 mouse_genomes_project 5 150372249 150410783 - MGP_C3HHeJ_P0075507 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075508.1 MGP_C3HHeJ_G0030067.1 mouse_genomes_project 5 150372672 150388370 - protein_coding processed_transcript MGP_C3HHeJ_T0073757.1 MGP_C3HHeJ_G0029739.1 mouse_genomes_project 5 125194771 125232230 + MGP_C3HHeJ_P0073757 Pptc7 protein_coding protein_coding MGP_C3HHeJ_T0011507.1 MGP_C3HHeJ_G0009640.1 mouse_genomes_project 5 104965079 104965372 + Gm23085 misc_RNA misc_RNA MGP_C3HHeJ_T0071228.1 MGP_C3HHeJ_G0029233.1 mouse_genomes_project 5 44159180 44178519 + MGP_C3HHeJ_P0071228 Lap3 protein_coding protein_coding MGP_C3HHeJ_T0071229.1 MGP_C3HHeJ_G0029233.1 mouse_genomes_project 5 44159310 44166555 + Lap3 protein_coding retained_intron MGP_C3HHeJ_T0071230.1 MGP_C3HHeJ_G0029233.1 mouse_genomes_project 5 44164037 44170642 + Lap3 protein_coding retained_intron MGP_C3HHeJ_T0071231.1 MGP_C3HHeJ_G0029233.1 mouse_genomes_project 5 44166148 44170613 + Lap3 protein_coding retained_intron MGP_C3HHeJ_T0071232.1 MGP_C3HHeJ_G0029233.1 mouse_genomes_project 5 44175036 44177201 + Lap3 protein_coding retained_intron MGP_C3HHeJ_T0008149.1 MGP_C3HHeJ_G0006634.1 mouse_genomes_project 5 102197082 102200793 - Gm36793 lincRNA lincRNA MGP_C3HHeJ_T0071862.1 MGP_C3HHeJ_G0029340.1 mouse_genomes_project 5 76168234 76179490 + Srd5a3 protein_coding retained_intron MGP_C3HHeJ_T0071863.1 MGP_C3HHeJ_G0029340.1 mouse_genomes_project 5 76168269 76168826 + Srd5a3 protein_coding processed_transcript MGP_C3HHeJ_T0071864.1 MGP_C3HHeJ_G0029340.1 mouse_genomes_project 5 76168291 76183857 + MGP_C3HHeJ_P0071864 Srd5a3 protein_coding protein_coding MGP_C3HHeJ_T0071865.1 MGP_C3HHeJ_G0029340.1 mouse_genomes_project 5 76168663 76177738 + MGP_C3HHeJ_P0071865 Srd5a3 protein_coding protein_coding MGP_C3HHeJ_T0071866.1 MGP_C3HHeJ_G0029340.1 mouse_genomes_project 5 76174597 76183626 + MGP_C3HHeJ_P0071866 Srd5a3 protein_coding protein_coding MGP_C3HHeJ_T0071867.1 MGP_C3HHeJ_G0029340.1 mouse_genomes_project 5 76181184 76183886 + Srd5a3 protein_coding retained_intron MGP_C3HHeJ_T0075462.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149398832 149407421 + MGP_C3HHeJ_P0075462 Bud31 protein_coding protein_coding MGP_C3HHeJ_T0075463.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149398866 149400132 + Bud31 protein_coding retained_intron MGP_C3HHeJ_T0075464.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149398867 149407417 + MGP_C3HHeJ_P0075464 Bud31 protein_coding protein_coding MGP_C3HHeJ_T0075465.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149398878 149407417 + MGP_C3HHeJ_P0075465 Bud31 protein_coding protein_coding MGP_C3HHeJ_T0075466.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149398885 149407414 + MGP_C3HHeJ_P0075466 Bud31 protein_coding protein_coding MGP_C3HHeJ_T0075467.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149400617 149404290 + Bud31 protein_coding retained_intron MGP_C3HHeJ_T0075468.1 MGP_C3HHeJ_G0030055.1 mouse_genomes_project 5 149404146 149407326 + Bud31 protein_coding retained_intron MGP_C3HHeJ_T0014995.1 MGP_C3HHeJ_G0013099.1 mouse_genomes_project 5 142192061 142192265 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008320.1 MGP_C3HHeJ_G0006741.1 mouse_genomes_project 5 134662245 134685345 - Gm42590 lincRNA lincRNA MGP_C3HHeJ_T0069860.1 MGP_C3HHeJ_G0028997.1 mouse_genomes_project 5 11462057 11708480 + Sema3e protein_coding retained_intron MGP_C3HHeJ_T0069861.1 MGP_C3HHeJ_G0028997.1 mouse_genomes_project 5 11462057 11710855 + MGP_C3HHeJ_P0069861 Sema3e protein_coding protein_coding MGP_C3HHeJ_T0069862.1 MGP_C3HHeJ_G0028997.1 mouse_genomes_project 5 11684463 11686313 + Sema3e protein_coding retained_intron MGP_C3HHeJ_T0001550.1 MGP_C3HHeJ_G0001476.1 mouse_genomes_project 5 50471688 50473244 - TEC TEC MGP_C3HHeJ_T0008062.1 MGP_C3HHeJ_G0006567.1 mouse_genomes_project 5 63855779 63859199 + Gm43838 lincRNA lincRNA MGP_C3HHeJ_T0071716.1 MGP_C3HHeJ_G0029316.1 mouse_genomes_project 5 72480936 72507855 + MGP_C3HHeJ_P0071716 Nipal1 protein_coding protein_coding MGP_C3HHeJ_T0071717.1 MGP_C3HHeJ_G0029316.1 mouse_genomes_project 5 72480954 72504415 + MGP_C3HHeJ_P0071717 Nipal1 protein_coding protein_coding MGP_C3HHeJ_T0071718.1 MGP_C3HHeJ_G0029316.1 mouse_genomes_project 5 72480983 72492280 + Nipal1 protein_coding retained_intron MGP_C3HHeJ_T0074107.1 MGP_C3HHeJ_G0029792.1 mouse_genomes_project 5 127595865 127606377 + MGP_C3HHeJ_P0074107 Tmed2 protein_coding protein_coding MGP_C3HHeJ_T0074108.1 MGP_C3HHeJ_G0029792.1 mouse_genomes_project 5 127596125 127605042 + MGP_C3HHeJ_P0074108 Tmed2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074109.1 MGP_C3HHeJ_G0029792.1 mouse_genomes_project 5 127596499 127605233 + MGP_C3HHeJ_P0074109 Tmed2 protein_coding protein_coding MGP_C3HHeJ_T0074110.1 MGP_C3HHeJ_G0029792.1 mouse_genomes_project 5 127596506 127597293 + Tmed2 protein_coding retained_intron MGP_C3HHeJ_T0004584.1 MGP_C3HHeJ_G0003965.1 mouse_genomes_project 5 29718721 29720041 - 4930566F21Rik antisense antisense MGP_C3HHeJ_T0004585.1 MGP_C3HHeJ_G0003965.1 mouse_genomes_project 5 29718725 29728089 - 4930566F21Rik antisense antisense MGP_C3HHeJ_T0072580.1 MGP_C3HHeJ_G0029504.1 mouse_genomes_project 5 105330405 105357655 - MGP_C3HHeJ_P0072580 Hsd17b13 protein_coding protein_coding MGP_C3HHeJ_T0072581.1 MGP_C3HHeJ_G0029504.1 mouse_genomes_project 5 105339538 105357617 - MGP_C3HHeJ_P0072581 Hsd17b13 protein_coding protein_coding MGP_C3HHeJ_T0072582.1 MGP_C3HHeJ_G0029504.1 mouse_genomes_project 5 105339538 105357701 - MGP_C3HHeJ_P0072582 Hsd17b13 protein_coding protein_coding MGP_C3HHeJ_T0100703.1 MGP_C3HHeJ_G0038897.1 mouse_genomes_project 5 63492576 63492708 - Gm25608 snoRNA snoRNA MGP_C3HHeJ_T0004628.1 MGP_C3HHeJ_G0004000.1 mouse_genomes_project 5 65753231 65778143 + Gm26725 antisense antisense MGP_C3HHeJ_T0075682.1 MGP_C3HHeJ_G0030102.1 mouse_genomes_project 5 154486108 154571319 + MGP_C3HHeJ_P0075682 B3glct protein_coding protein_coding MGP_C3HHeJ_T0075683.1 MGP_C3HHeJ_G0030102.1 mouse_genomes_project 5 154548073 154559855 + B3glct protein_coding processed_transcript MGP_C3HHeJ_T0075684.1 MGP_C3HHeJ_G0030102.1 mouse_genomes_project 5 154562656 154569329 + B3glct protein_coding retained_intron MGP_C3HHeJ_T0014994.1 MGP_C3HHeJ_G0013098.1 mouse_genomes_project 5 141794571 141794773 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014693.1 MGP_C3HHeJ_G0012797.1 mouse_genomes_project 5 14523765 14524018 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071161.1 MGP_C3HHeJ_G0029223.1 mouse_genomes_project 5 42249894 42335113 + MGP_C3HHeJ_P0071161 Cc2d2a protein_coding protein_coding MGP_C3HHeJ_T0071162.1 MGP_C3HHeJ_G0029223.1 mouse_genomes_project 5 42261451 42278453 + Cc2d2a protein_coding retained_intron MGP_C3HHeJ_T0071163.1 MGP_C3HHeJ_G0029223.1 mouse_genomes_project 5 42261451 42333458 + MGP_C3HHeJ_P0071163 Cc2d2a protein_coding protein_coding MGP_C3HHeJ_T0071164.1 MGP_C3HHeJ_G0029223.1 mouse_genomes_project 5 42287467 42309604 + Cc2d2a protein_coding retained_intron MGP_C3HHeJ_T0075594.1 MGP_C3HHeJ_G0030088.1 mouse_genomes_project 5 152527431 152529626 + Pomp protein_coding retained_intron MGP_C3HHeJ_T0075595.1 MGP_C3HHeJ_G0030088.1 mouse_genomes_project 5 152527447 152539861 + MGP_C3HHeJ_P0075595 Pomp protein_coding protein_coding MGP_C3HHeJ_T0075596.1 MGP_C3HHeJ_G0030088.1 mouse_genomes_project 5 152527483 152542329 + MGP_C3HHeJ_P0075596 Pomp protein_coding protein_coding MGP_C3HHeJ_T0075597.1 MGP_C3HHeJ_G0030088.1 mouse_genomes_project 5 152537182 152542409 + Pomp protein_coding processed_transcript MGP_C3HHeJ_T0075598.1 MGP_C3HHeJ_G0030088.1 mouse_genomes_project 5 152539231 152542367 + Pomp protein_coding retained_intron MGP_C3HHeJ_T0008236.1 MGP_C3HHeJ_G0006688.1 mouse_genomes_project 5 118391290 118393538 - Gm13842 lincRNA lincRNA MGP_C3HHeJ_T0008237.1 MGP_C3HHeJ_G0006688.1 mouse_genomes_project 5 118391725 118393932 - Gm13842 lincRNA lincRNA MGP_C3HHeJ_T0014929.1 MGP_C3HHeJ_G0013033.1 mouse_genomes_project 5 109894272 109894857 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001635.1 MGP_C3HHeJ_G0001560.1 mouse_genomes_project 5 67757456 67759157 - TEC TEC MGP_C3HHeJ_T0014820.1 MGP_C3HHeJ_G0012924.1 mouse_genomes_project 5 60962502 60962971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073919.1 MGP_C3HHeJ_G0029762.1 mouse_genomes_project 5 126345410 126378014 + Bcl7a protein_coding processed_transcript MGP_C3HHeJ_T0073920.1 MGP_C3HHeJ_G0029762.1 mouse_genomes_project 5 126346024 126378946 + MGP_C3HHeJ_P0073920 Bcl7a protein_coding protein_coding MGP_C3HHeJ_T0073921.1 MGP_C3HHeJ_G0029762.1 mouse_genomes_project 5 126346076 126361574 + MGP_C3HHeJ_P0073921 Bcl7a protein_coding protein_coding MGP_C3HHeJ_T0072701.1 MGP_C3HHeJ_G0029534.1 mouse_genomes_project 5 109084628 109096253 + MGP_C3HHeJ_P0072701 Ephx4 protein_coding protein_coding MGP_C3HHeJ_T0072702.1 MGP_C3HHeJ_G0029534.1 mouse_genomes_project 5 109085402 109112486 + MGP_C3HHeJ_P0072702 Ephx4 protein_coding protein_coding MGP_C3HHeJ_T0072703.1 MGP_C3HHeJ_G0029534.1 mouse_genomes_project 5 109085681 109096161 + MGP_C3HHeJ_P0072703 Ephx4 protein_coding protein_coding MGP_C3HHeJ_T0072704.1 MGP_C3HHeJ_G0029534.1 mouse_genomes_project 5 109088401 109096221 + MGP_C3HHeJ_P0072704 Ephx4 protein_coding protein_coding MGP_C3HHeJ_T0072598.1 MGP_C3HHeJ_G0029511.1 mouse_genomes_project 5 105701873 105719330 + MGP_C3HHeJ_P0072598 Mepe protein_coding protein_coding MGP_C3HHeJ_T0073751.1 MGP_C3HHeJ_G0029738.1 mouse_genomes_project 5 125143104 125172211 - MGP_C3HHeJ_P0073751 Tctn1 protein_coding protein_coding MGP_C3HHeJ_T0073752.1 MGP_C3HHeJ_G0029738.1 mouse_genomes_project 5 125145615 125172120 - MGP_C3HHeJ_P0073752 Tctn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073753.1 MGP_C3HHeJ_G0029738.1 mouse_genomes_project 5 125147414 125172211 - MGP_C3HHeJ_P0073753 Tctn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073754.1 MGP_C3HHeJ_G0029738.1 mouse_genomes_project 5 125151698 125159429 - Tctn1 protein_coding processed_transcript MGP_C3HHeJ_T0073755.1 MGP_C3HHeJ_G0029738.1 mouse_genomes_project 5 125154567 125162317 - Tctn1 protein_coding retained_intron MGP_C3HHeJ_T0073756.1 MGP_C3HHeJ_G0029738.1 mouse_genomes_project 5 125160074 125172166 - Tctn1 protein_coding retained_intron MGP_C3HHeJ_T0008194.1 MGP_C3HHeJ_G0006664.1 mouse_genomes_project 5 112634490 112636097 + Gm42595 lincRNA lincRNA MGP_C3HHeJ_T0098148.1 MGP_C3HHeJ_G0036360.1 mouse_genomes_project 5 92913199 92913306 - Gm24931 rRNA rRNA MGP_C3HHeJ_T0008255.1 MGP_C3HHeJ_G0006704.1 mouse_genomes_project 5 122186057 122195807 + Gm16063 lincRNA lincRNA MGP_C3HHeJ_T0099462.1 MGP_C3HHeJ_G0037656.1 mouse_genomes_project 5 93849169 93849277 - Gm25521 snRNA snRNA MGP_C3HHeJ_T0014935.1 MGP_C3HHeJ_G0013039.1 mouse_genomes_project 5 111312677 111313261 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071685.1 MGP_C3HHeJ_G0029310.1 mouse_genomes_project 5 71948526 71960132 - MGP_C3HHeJ_P0071685 Commd8 protein_coding protein_coding MGP_C3HHeJ_T0071686.1 MGP_C3HHeJ_G0029310.1 mouse_genomes_project 5 71949136 71960107 - MGP_C3HHeJ_P0071686 Commd8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071687.1 MGP_C3HHeJ_G0029310.1 mouse_genomes_project 5 71950962 71953090 - Commd8 protein_coding retained_intron MGP_C3HHeJ_T0071688.1 MGP_C3HHeJ_G0029310.1 mouse_genomes_project 5 71951827 71957663 - Commd8 protein_coding processed_transcript MGP_C3HHeJ_T0071689.1 MGP_C3HHeJ_G0029310.1 mouse_genomes_project 5 71952913 71960099 - MGP_C3HHeJ_P0071689 Commd8 protein_coding protein_coding MGP_C3HHeJ_T0001646.1 MGP_C3HHeJ_G0001571.1 mouse_genomes_project 5 72385833 72389683 - TEC TEC MGP_C3HHeJ_T0011511.1 MGP_C3HHeJ_G0009644.1 mouse_genomes_project 5 114260545 114260906 - Gm27998 misc_RNA misc_RNA MGP_C3HHeJ_T0073138.1 MGP_C3HHeJ_G0029623.1 mouse_genomes_project 5 116104342 116165996 - MGP_C3HHeJ_P0073138 Ssh1 protein_coding protein_coding MGP_C3HHeJ_T0073139.1 MGP_C3HHeJ_G0029623.1 mouse_genomes_project 5 116106987 116163980 - MGP_C3HHeJ_P0073139 Ssh1 protein_coding protein_coding MGP_C3HHeJ_T0073140.1 MGP_C3HHeJ_G0029623.1 mouse_genomes_project 5 116109416 116159939 - MGP_C3HHeJ_P0073140 Ssh1 protein_coding protein_coding MGP_C3HHeJ_T0073141.1 MGP_C3HHeJ_G0029623.1 mouse_genomes_project 5 116129603 116164028 - MGP_C3HHeJ_P0073141 Ssh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073142.1 MGP_C3HHeJ_G0029623.1 mouse_genomes_project 5 116134481 116135637 - MGP_C3HHeJ_P0073142 Ssh1 protein_coding protein_coding MGP_C3HHeJ_T0073143.1 MGP_C3HHeJ_G0029623.1 mouse_genomes_project 5 116135484 116163968 - Ssh1 protein_coding retained_intron MGP_C3HHeJ_T0074465.1 MGP_C3HHeJ_G0029851.1 mouse_genomes_project 5 137854744 137920969 - MGP_C3HHeJ_P0074465 Clip2 protein_coding protein_coding MGP_C3HHeJ_T0074466.1 MGP_C3HHeJ_G0029851.1 mouse_genomes_project 5 137854748 137920969 - MGP_C3HHeJ_P0074466 Clip2 protein_coding protein_coding MGP_C3HHeJ_T0074467.1 MGP_C3HHeJ_G0029851.1 mouse_genomes_project 5 137880194 137882560 - Clip2 protein_coding retained_intron MGP_C3HHeJ_T0072848.1 MGP_C3HHeJ_G0029562.1 mouse_genomes_project 5 110493440 110505605 + MGP_C3HHeJ_P0072848 Fgfrl1 protein_coding protein_coding MGP_C3HHeJ_T0072849.1 MGP_C3HHeJ_G0029562.1 mouse_genomes_project 5 110496310 110505408 + MGP_C3HHeJ_P0072849 Fgfrl1 protein_coding protein_coding MGP_C3HHeJ_T0072850.1 MGP_C3HHeJ_G0029562.1 mouse_genomes_project 5 110496348 110508993 + MGP_C3HHeJ_P0072850 Fgfrl1 protein_coding protein_coding MGP_C3HHeJ_T0072851.1 MGP_C3HHeJ_G0029562.1 mouse_genomes_project 5 110496582 110508965 + MGP_C3HHeJ_P0072851 Fgfrl1 protein_coding protein_coding MGP_C3HHeJ_T0072852.1 MGP_C3HHeJ_G0029562.1 mouse_genomes_project 5 110507142 110507941 + Fgfrl1 protein_coding retained_intron MGP_C3HHeJ_T0073081.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115339375 115412186 - MGP_C3HHeJ_P0073081 Sgsm1 protein_coding protein_coding MGP_C3HHeJ_T0073082.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115339384 115379265 - MGP_C3HHeJ_P0073082 Sgsm1 protein_coding protein_coding MGP_C3HHeJ_T0073083.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115355509 115379265 - Sgsm1 protein_coding processed_transcript MGP_C3HHeJ_T0073084.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115356152 115412177 - Sgsm1 protein_coding processed_transcript MGP_C3HHeJ_T0073085.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115364352 115412139 - MGP_C3HHeJ_P0073085 Sgsm1 protein_coding protein_coding MGP_C3HHeJ_T0073086.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115364965 115412097 - MGP_C3HHeJ_P0073086 Sgsm1 protein_coding protein_coding MGP_C3HHeJ_T0073087.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115372627 115379251 - MGP_C3HHeJ_P0073087 Sgsm1 protein_coding protein_coding MGP_C3HHeJ_T0073088.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115374564 115378007 - Sgsm1 protein_coding retained_intron MGP_C3HHeJ_T0073089.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115378277 115381542 - Sgsm1 protein_coding retained_intron MGP_C3HHeJ_T0073090.1 MGP_C3HHeJ_G0029613.1 mouse_genomes_project 5 115385903 115412120 - Sgsm1 protein_coding retained_intron MGP_C3HHeJ_T0072135.1 MGP_C3HHeJ_G0029407.1 mouse_genomes_project 5 89168578 89175464 - Jchain protein_coding retained_intron MGP_C3HHeJ_T0072136.1 MGP_C3HHeJ_G0029407.1 mouse_genomes_project 5 89169287 89176734 - MGP_C3HHeJ_P0072136 Jchain protein_coding protein_coding MGP_C3HHeJ_T0014806.1 MGP_C3HHeJ_G0012910.1 mouse_genomes_project 5 56638354 56639798 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014834.1 MGP_C3HHeJ_G0012938.1 mouse_genomes_project 5 69648276 69648560 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008019.1 MGP_C3HHeJ_G0006532.1 mouse_genomes_project 5 36401429 36405570 + Gm20052 lincRNA lincRNA MGP_C3HHeJ_T0008020.1 MGP_C3HHeJ_G0006532.1 mouse_genomes_project 5 36401596 36402632 + Gm20052 lincRNA lincRNA MGP_C3HHeJ_T0008021.1 MGP_C3HHeJ_G0006532.1 mouse_genomes_project 5 36402007 36404452 + Gm20052 lincRNA lincRNA MGP_C3HHeJ_T0008022.1 MGP_C3HHeJ_G0006532.1 mouse_genomes_project 5 36402354 36404929 + Gm20052 lincRNA lincRNA MGP_C3HHeJ_T0008023.1 MGP_C3HHeJ_G0006532.1 mouse_genomes_project 5 36402365 36404790 + Gm20052 lincRNA lincRNA MGP_C3HHeJ_T0100704.1 MGP_C3HHeJ_G0038898.1 mouse_genomes_project 5 63627608 63627742 + Gm22559 snoRNA snoRNA MGP_C3HHeJ_T0071404.1 MGP_C3HHeJ_G0029263.1 mouse_genomes_project 5 63293262 63377401 + MGP_C3HHeJ_P0071404 0610040J01Rik protein_coding protein_coding MGP_C3HHeJ_T0071405.1 MGP_C3HHeJ_G0029263.1 mouse_genomes_project 5 63293419 63376343 + MGP_C3HHeJ_P0071405 0610040J01Rik protein_coding protein_coding MGP_C3HHeJ_T0071406.1 MGP_C3HHeJ_G0029263.1 mouse_genomes_project 5 63353463 63376042 + MGP_C3HHeJ_P0071406 0610040J01Rik protein_coding protein_coding MGP_C3HHeJ_T0071407.1 MGP_C3HHeJ_G0029263.1 mouse_genomes_project 5 63354630 63376305 + MGP_C3HHeJ_P0071407 0610040J01Rik protein_coding protein_coding MGP_C3HHeJ_T0004737.1 MGP_C3HHeJ_G0004076.1 mouse_genomes_project 5 122708204 122726376 - Gm10390 antisense antisense MGP_C3HHeJ_T0004738.1 MGP_C3HHeJ_G0004076.1 mouse_genomes_project 5 122718599 122726378 - Gm10390 antisense antisense MGP_C3HHeJ_T0001690.1 MGP_C3HHeJ_G0001614.1 mouse_genomes_project 5 98193633 98194261 + TEC TEC MGP_C3HHeJ_T0001601.1 MGP_C3HHeJ_G0001526.1 mouse_genomes_project 5 65099207 65100955 + TEC TEC MGP_C3HHeJ_T0074829.1 MGP_C3HHeJ_G0029921.1 mouse_genomes_project 5 141110854 141113651 - MGP_C3HHeJ_P0074829 Epo protein_coding protein_coding MGP_C3HHeJ_T0074830.1 MGP_C3HHeJ_G0029921.1 mouse_genomes_project 5 141110854 141165021 - MGP_C3HHeJ_P0074830 Epo protein_coding protein_coding MGP_C3HHeJ_T0074831.1 MGP_C3HHeJ_G0029921.1 mouse_genomes_project 5 141110860 141113651 - MGP_C3HHeJ_P0074831 Epo protein_coding protein_coding MGP_C3HHeJ_T0071227.1 MGP_C3HHeJ_G0029232.1 mouse_genomes_project 5 44116169 44127600 + MGP_C3HHeJ_P0071227 Clrn2 protein_coding protein_coding MGP_C3HHeJ_T0072128.1 MGP_C3HHeJ_G0029402.1 mouse_genomes_project 5 88902218 88918100 + MGP_C3HHeJ_P0072128 Gm7714 protein_coding protein_coding MGP_C3HHeJ_T0014974.1 MGP_C3HHeJ_G0013078.1 mouse_genomes_project 5 129099695 129100228 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004818.1 MGP_C3HHeJ_G0004133.1 mouse_genomes_project 5 152040722 152043098 + Gm26597 antisense antisense MGP_C3HHeJ_T0098519.1 MGP_C3HHeJ_G0036720.1 mouse_genomes_project 5 155424531 155428579 + Gm42531 sense_intronic sense_intronic MGP_C3HHeJ_T0008066.1 MGP_C3HHeJ_G0006571.1 mouse_genomes_project 5 63981126 63988035 + C030018K13Rik lincRNA lincRNA MGP_C3HHeJ_T0008067.1 MGP_C3HHeJ_G0006571.1 mouse_genomes_project 5 63981132 63983847 + C030018K13Rik lincRNA lincRNA MGP_C3HHeJ_T0008068.1 MGP_C3HHeJ_G0006571.1 mouse_genomes_project 5 63981153 63986533 + C030018K13Rik lincRNA lincRNA MGP_C3HHeJ_T0101212.1 MGP_C3HHeJ_G0039347.1 mouse_genomes_project 5 20716819 20717384 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001776.1 MGP_C3HHeJ_G0001700.1 mouse_genomes_project 5 125505853 125506427 - TEC TEC MGP_C3HHeJ_T0014961.1 MGP_C3HHeJ_G0013065.1 mouse_genomes_project 5 119785505 119785964 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014785.1 MGP_C3HHeJ_G0012889.1 mouse_genomes_project 5 46400091 46400896 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074469.1 MGP_C3HHeJ_G0029853.1 mouse_genomes_project 5 137963213 137975113 + Rfc2 protein_coding processed_transcript MGP_C3HHeJ_T0074470.1 MGP_C3HHeJ_G0029853.1 mouse_genomes_project 5 137964586 137986969 + MGP_C3HHeJ_P0074470 Rfc2 protein_coding protein_coding MGP_C3HHeJ_T0074471.1 MGP_C3HHeJ_G0029853.1 mouse_genomes_project 5 137964653 137975550 + Rfc2 protein_coding retained_intron MGP_C3HHeJ_T0074472.1 MGP_C3HHeJ_G0029853.1 mouse_genomes_project 5 137975435 137981871 + MGP_C3HHeJ_P0074472 Rfc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074473.1 MGP_C3HHeJ_G0029853.1 mouse_genomes_project 5 137976620 137979228 + Rfc2 protein_coding retained_intron MGP_C3HHeJ_T0074474.1 MGP_C3HHeJ_G0029853.1 mouse_genomes_project 5 137978034 137982244 + Rfc2 protein_coding retained_intron MGP_C3HHeJ_T0070079.1 MGP_C3HHeJ_G0029038.1 mouse_genomes_project 5 22359590 22364033 + MGP_C3HHeJ_P0070079 Asic3 protein_coding protein_coding MGP_C3HHeJ_T0070080.1 MGP_C3HHeJ_G0029038.1 mouse_genomes_project 5 22359649 22364033 + Asic3 protein_coding retained_intron MGP_C3HHeJ_T0070081.1 MGP_C3HHeJ_G0029038.1 mouse_genomes_project 5 22359910 22363945 + MGP_C3HHeJ_P0070081 Asic3 protein_coding protein_coding MGP_C3HHeJ_T0070082.1 MGP_C3HHeJ_G0029038.1 mouse_genomes_project 5 22361938 22364033 + Asic3 protein_coding retained_intron MGP_C3HHeJ_T0070083.1 MGP_C3HHeJ_G0029038.1 mouse_genomes_project 5 22362775 22364034 + MGP_C3HHeJ_P0070083 Asic3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074064.1 MGP_C3HHeJ_G0029785.1 mouse_genomes_project 5 127364588 127376600 + MGP_C3HHeJ_P0074064 2810006K23Rik protein_coding protein_coding MGP_C3HHeJ_T0074065.1 MGP_C3HHeJ_G0029785.1 mouse_genomes_project 5 127364597 127379002 + MGP_C3HHeJ_P0074065 2810006K23Rik protein_coding protein_coding MGP_C3HHeJ_T0001614.1 MGP_C3HHeJ_G0001539.1 mouse_genomes_project 5 65682483 65686733 - TEC TEC MGP_C3HHeJ_T0017911.1 MGP_C3HHeJ_G0015355.1 mouse_genomes_project 5 35070250 35100627 - Gm42936 processed_transcript processed_transcript MGP_C3HHeJ_T0014946.1 MGP_C3HHeJ_G0013050.1 mouse_genomes_project 5 115924327 115924531 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001779.1 MGP_C3HHeJ_G0001703.1 mouse_genomes_project 5 125999182 126002020 + TEC TEC MGP_C3HHeJ_T0071147.1 MGP_C3HHeJ_G0029219.1 mouse_genomes_project 5 40406305 40466343 - MGP_C3HHeJ_P0071147 Bod1l protein_coding protein_coding MGP_C3HHeJ_T0071148.1 MGP_C3HHeJ_G0029219.1 mouse_genomes_project 5 40406305 40466343 - MGP_C3HHeJ_P0071148 Bod1l protein_coding protein_coding MGP_C3HHeJ_T0071149.1 MGP_C3HHeJ_G0029219.1 mouse_genomes_project 5 40442205 40444625 - Bod1l protein_coding processed_transcript MGP_C3HHeJ_T0071150.1 MGP_C3HHeJ_G0029219.1 mouse_genomes_project 5 40443097 40466320 - Bod1l protein_coding retained_intron MGP_C3HHeJ_T0070395.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29127334 29132176 - MGP_C3HHeJ_P0070395 Preb protein_coding protein_coding MGP_C3HHeJ_T0070396.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29127431 29133534 - MGP_C3HHeJ_P0070396 Preb protein_coding protein_coding MGP_C3HHeJ_T0070397.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29127703 29131522 - Preb protein_coding processed_transcript MGP_C3HHeJ_T0070398.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29127829 29128520 - Preb protein_coding retained_intron MGP_C3HHeJ_T0070399.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29128268 29132099 - Preb protein_coding retained_intron MGP_C3HHeJ_T0070400.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29131410 29132097 - Preb protein_coding retained_intron MGP_C3HHeJ_T0070401.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29131558 29132661 - Preb protein_coding retained_intron MGP_C3HHeJ_T0070402.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29132145 29133699 - Preb protein_coding processed_transcript MGP_C3HHeJ_T0070403.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29132315 29132984 - Preb protein_coding processed_transcript MGP_C3HHeJ_T0070404.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29132373 29133681 - Preb protein_coding retained_intron MGP_C3HHeJ_T0070405.1 MGP_C3HHeJ_G0029101.1 mouse_genomes_project 5 29132795 29133691 - Preb protein_coding processed_transcript MGP_C3HHeJ_T0071182.1 MGP_C3HHeJ_G0029227.1 mouse_genomes_project 5 42589073 42591995 - MGP_C3HHeJ_P0071182 Fgfbp1 protein_coding protein_coding MGP_C3HHeJ_T0071183.1 MGP_C3HHeJ_G0029227.1 mouse_genomes_project 5 42589075 42591980 - MGP_C3HHeJ_P0071183 Fgfbp1 protein_coding protein_coding MGP_C3HHeJ_T0071184.1 MGP_C3HHeJ_G0029227.1 mouse_genomes_project 5 42589078 42591269 - MGP_C3HHeJ_P0071184 Fgfbp1 protein_coding protein_coding MGP_C3HHeJ_T0010632.1 MGP_C3HHeJ_G0008765.1 mouse_genomes_project 5 137667952 137668021 + Mir3965 miRNA miRNA MGP_C3HHeJ_T0008372.1 MGP_C3HHeJ_G0006785.1 mouse_genomes_project 5 153756280 153762093 + Gm15408 lincRNA lincRNA MGP_C3HHeJ_T0001807.1 MGP_C3HHeJ_G0001730.1 mouse_genomes_project 5 133325216 133325714 + TEC TEC MGP_C3HHeJ_T0001443.1 MGP_C3HHeJ_G0001372.1 mouse_genomes_project 5 23349597 23353604 + TEC TEC MGP_C3HHeJ_T0072796.1 MGP_C3HHeJ_G0029553.1 mouse_genomes_project 5 110216790 110217994 - MGP_C3HHeJ_P0072796 Atp5k protein_coding protein_coding MGP_C3HHeJ_T0072797.1 MGP_C3HHeJ_G0029553.1 mouse_genomes_project 5 110216790 110217994 - MGP_C3HHeJ_P0072797 Atp5k protein_coding protein_coding MGP_C3HHeJ_T0072798.1 MGP_C3HHeJ_G0029553.1 mouse_genomes_project 5 110216792 110217943 - Atp5k protein_coding retained_intron MGP_C3HHeJ_T0008092.1 MGP_C3HHeJ_G0006589.1 mouse_genomes_project 5 75785542 75790857 - Gm43100 lincRNA lincRNA MGP_C3HHeJ_T0010579.1 MGP_C3HHeJ_G0008712.1 mouse_genomes_project 5 6540597 6540673 + Mir879 miRNA miRNA MGP_C3HHeJ_T0008007.1 MGP_C3HHeJ_G0006526.1 mouse_genomes_project 5 32713557 32732218 - Gm43458 lincRNA lincRNA MGP_C3HHeJ_T0071314.1 MGP_C3HHeJ_G0029244.1 mouse_genomes_project 5 51382165 51389860 + MGP_C3HHeJ_P0071314 Sod3 protein_coding protein_coding MGP_C3HHeJ_T0074103.1 MGP_C3HHeJ_G0029791.1 mouse_genomes_project 5 127547339 127586428 - MGP_C3HHeJ_P0074103 Rilpl1 protein_coding protein_coding MGP_C3HHeJ_T0074104.1 MGP_C3HHeJ_G0029791.1 mouse_genomes_project 5 127547796 127558822 - MGP_C3HHeJ_P0074104 Rilpl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074105.1 MGP_C3HHeJ_G0029791.1 mouse_genomes_project 5 127547911 127569540 - MGP_C3HHeJ_P0074105 Rilpl1 protein_coding protein_coding MGP_C3HHeJ_T0074106.1 MGP_C3HHeJ_G0029791.1 mouse_genomes_project 5 127547923 127569624 - MGP_C3HHeJ_P0074106 Rilpl1 protein_coding protein_coding MGP_C3HHeJ_T0071436.1 MGP_C3HHeJ_G0029269.1 mouse_genomes_project 5 64477000 64486111 - MGP_C3HHeJ_P0071436 protein_coding protein_coding MGP_C3HHeJ_T0071437.1 MGP_C3HHeJ_G0029269.1 mouse_genomes_project 5 64481281 64486161 - MGP_C3HHeJ_P0071437 protein_coding protein_coding MGP_C3HHeJ_T0071955.1 MGP_C3HHeJ_G0029357.1 mouse_genomes_project 5 77376142 77394041 - MGP_C3HHeJ_P0071955 Noa1 protein_coding protein_coding MGP_C3HHeJ_T0071956.1 MGP_C3HHeJ_G0029357.1 mouse_genomes_project 5 77388942 77394016 - Noa1 protein_coding retained_intron MGP_C3HHeJ_T0071957.1 MGP_C3HHeJ_G0029357.1 mouse_genomes_project 5 77389563 77391600 - Noa1 protein_coding processed_transcript MGP_C3HHeJ_T0072946.1 MGP_C3HHeJ_G0029586.1 mouse_genomes_project 5 112621501 112626520 - MGP_C3HHeJ_P0072946 Noc4l protein_coding protein_coding MGP_C3HHeJ_T0072947.1 MGP_C3HHeJ_G0029586.1 mouse_genomes_project 5 112621930 112623101 - Noc4l protein_coding retained_intron MGP_C3HHeJ_T0072948.1 MGP_C3HHeJ_G0029586.1 mouse_genomes_project 5 112624153 112626359 - Noc4l protein_coding retained_intron MGP_C3HHeJ_T0072949.1 MGP_C3HHeJ_G0029586.1 mouse_genomes_project 5 112624327 112626451 - Noc4l protein_coding retained_intron MGP_C3HHeJ_T0072950.1 MGP_C3HHeJ_G0029586.1 mouse_genomes_project 5 112624447 112626469 - Noc4l protein_coding retained_intron MGP_C3HHeJ_T0072951.1 MGP_C3HHeJ_G0029586.1 mouse_genomes_project 5 112626104 112626483 - Noc4l protein_coding retained_intron MGP_C3HHeJ_T0008047.1 MGP_C3HHeJ_G0006553.1 mouse_genomes_project 5 49488910 49644990 + Gm43016 lincRNA lincRNA MGP_C3HHeJ_T0001427.1 MGP_C3HHeJ_G0001357.1 mouse_genomes_project 5 12264397 12266056 + TEC TEC MGP_C3HHeJ_T0071103.1 MGP_C3HHeJ_G0029210.1 mouse_genomes_project 5 36780890 36809258 + MGP_C3HHeJ_P0071103 Otop1 protein_coding protein_coding MGP_C3HHeJ_T0071104.1 MGP_C3HHeJ_G0029210.1 mouse_genomes_project 5 36782319 36809266 + Otop1 protein_coding processed_transcript MGP_C3HHeJ_T0071105.1 MGP_C3HHeJ_G0029210.1 mouse_genomes_project 5 36782319 36809257 + MGP_C3HHeJ_P0071105 Otop1 protein_coding protein_coding MGP_C3HHeJ_T0071106.1 MGP_C3HHeJ_G0029210.1 mouse_genomes_project 5 36790887 36808426 + Otop1 protein_coding processed_transcript MGP_C3HHeJ_T0071013.1 MGP_C3HHeJ_G0029195.1 mouse_genomes_project 5 35274504 35298238 - MGP_C3HHeJ_P0071013 Man2b2 protein_coding protein_coding MGP_C3HHeJ_T0071014.1 MGP_C3HHeJ_G0029195.1 mouse_genomes_project 5 35276390 35280548 - MGP_C3HHeJ_P0071014 Man2b2 protein_coding protein_coding MGP_C3HHeJ_T0071015.1 MGP_C3HHeJ_G0029195.1 mouse_genomes_project 5 35276396 35285269 - MGP_C3HHeJ_P0071015 Man2b2 protein_coding protein_coding MGP_C3HHeJ_T0008036.1 MGP_C3HHeJ_G0006543.1 mouse_genomes_project 5 41966926 41973941 + lincRNA lincRNA MGP_C3HHeJ_T0073530.1 MGP_C3HHeJ_G0029697.1 mouse_genomes_project 5 123062228 123077430 - MGP_C3HHeJ_P0073530 Sdsl protein_coding protein_coding MGP_C3HHeJ_T0073531.1 MGP_C3HHeJ_G0029697.1 mouse_genomes_project 5 123062244 123077477 - MGP_C3HHeJ_P0073531 Sdsl protein_coding protein_coding MGP_C3HHeJ_T0073532.1 MGP_C3HHeJ_G0029697.1 mouse_genomes_project 5 123064754 123071397 - MGP_C3HHeJ_P0073532 Sdsl protein_coding protein_coding MGP_C3HHeJ_T0070463.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29347547 29372730 - Gtf3c2 protein_coding retained_intron MGP_C3HHeJ_T0070464.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29347547 29372742 - MGP_C3HHeJ_P0070464 Gtf3c2 protein_coding protein_coding MGP_C3HHeJ_T0070465.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29348063 29372715 - MGP_C3HHeJ_P0070465 Gtf3c2 protein_coding protein_coding MGP_C3HHeJ_T0070466.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29348986 29350924 - Gtf3c2 protein_coding retained_intron MGP_C3HHeJ_T0070467.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29351038 29357676 - Gtf3c2 protein_coding retained_intron MGP_C3HHeJ_T0070468.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29358674 29372507 - Gtf3c2 protein_coding retained_intron MGP_C3HHeJ_T0070469.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29365568 29372509 - Gtf3c2 protein_coding retained_intron MGP_C3HHeJ_T0070470.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29365888 29367376 - MGP_C3HHeJ_P0070470 Gtf3c2 protein_coding protein_coding MGP_C3HHeJ_T0070471.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29366265 29372509 - MGP_C3HHeJ_P0070471 Gtf3c2 protein_coding protein_coding MGP_C3HHeJ_T0070472.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29366678 29372447 - MGP_C3HHeJ_P0070472 Gtf3c2 protein_coding protein_coding MGP_C3HHeJ_T0070473.1 MGP_C3HHeJ_G0029112.1 mouse_genomes_project 5 29366795 29367696 - MGP_C3HHeJ_P0070473 Gtf3c2 protein_coding protein_coding MGP_C3HHeJ_T0017902.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29122393 29125740 + Abhd1 processed_transcript processed_transcript MGP_C3HHeJ_T0017903.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29122393 29127428 + Abhd1 processed_transcript processed_transcript MGP_C3HHeJ_T0017904.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29122416 29127426 + Abhd1 processed_transcript retained_intron MGP_C3HHeJ_T0017905.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29122416 29126050 + Abhd1 processed_transcript processed_transcript MGP_C3HHeJ_T0017906.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29122419 29127036 + Abhd1 processed_transcript processed_transcript MGP_C3HHeJ_T0017907.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29122433 29127426 + Abhd1 processed_transcript processed_transcript MGP_C3HHeJ_T0017908.1 MGP_C3HHeJ_G0015353.1 mouse_genomes_project 5 29125710 29126521 + Abhd1 processed_transcript retained_intron MGP_C3HHeJ_T0014773.1 MGP_C3HHeJ_G0012877.1 mouse_genomes_project 5 37874606 37875063 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001580.1 MGP_C3HHeJ_G0001506.1 mouse_genomes_project 5 57259890 57260945 + TEC TEC MGP_C3HHeJ_T0074187.1 MGP_C3HHeJ_G0029806.1 mouse_genomes_project 5 128497241 128517013 + MGP_C3HHeJ_P0074187 Bri3bp protein_coding protein_coding MGP_C3HHeJ_T0074188.1 MGP_C3HHeJ_G0029806.1 mouse_genomes_project 5 128497423 128511369 + MGP_C3HHeJ_P0074188 Bri3bp protein_coding protein_coding MGP_C3HHeJ_T0074263.1 MGP_C3HHeJ_G0029821.1 mouse_genomes_project 5 132863253 132878760 - MGP_C3HHeJ_P0074263 Zfp11 protein_coding protein_coding MGP_C3HHeJ_T0014903.1 MGP_C3HHeJ_G0013007.1 mouse_genomes_project 5 102614988 102615280 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075224.1 MGP_C3HHeJ_G0030004.1 mouse_genomes_project 5 144815448 144893466 - MGP_C3HHeJ_P0075224 Gna12 protein_coding protein_coding MGP_C3HHeJ_T0001729.1 MGP_C3HHeJ_G0001653.1 mouse_genomes_project 5 115186009 115186573 + TEC TEC MGP_C3HHeJ_T0071137.1 MGP_C3HHeJ_G0029216.1 mouse_genomes_project 5 38154575 38298297 - MGP_C3HHeJ_P0071137 Hs3st1 protein_coding protein_coding MGP_C3HHeJ_T0071138.1 MGP_C3HHeJ_G0029216.1 mouse_genomes_project 5 38154579 38186244 - MGP_C3HHeJ_P0071138 Hs3st1 protein_coding protein_coding MGP_C3HHeJ_T0071139.1 MGP_C3HHeJ_G0029216.1 mouse_genomes_project 5 38155409 38186856 - MGP_C3HHeJ_P0071139 Hs3st1 protein_coding protein_coding MGP_C3HHeJ_T0071140.1 MGP_C3HHeJ_G0029216.1 mouse_genomes_project 5 38155714 38186207 - MGP_C3HHeJ_P0071140 Hs3st1 protein_coding protein_coding MGP_C3HHeJ_T0069799.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 5881935 6007521 + Abcb1b protein_coding retained_intron MGP_C3HHeJ_T0069800.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 5948777 6007521 + MGP_C3HHeJ_P0069800 Abcb1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069801.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 5948783 5967998 + MGP_C3HHeJ_P0069801 Abcb1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069802.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 5948816 6023977 + MGP_C3HHeJ_P0069802 Abcb1b protein_coding protein_coding MGP_C3HHeJ_T0069803.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 5948850 6023612 + MGP_C3HHeJ_P0069803 Abcb1b protein_coding unknown_likely_coding MGP_C3HHeJ_T0069804.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 5980912 5983382 + Abcb1b protein_coding retained_intron MGP_C3HHeJ_T0069805.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 6009076 6011475 + Abcb1b protein_coding retained_intron MGP_C3HHeJ_T0069806.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 6009281 6023597 + MGP_C3HHeJ_P0069806 Abcb1b protein_coding protein_coding MGP_C3HHeJ_T0069807.1 MGP_C3HHeJ_G0028987.1 mouse_genomes_project 5 6009549 6012575 + Abcb1b protein_coding retained_intron MGP_C3HHeJ_T0069885.1 MGP_C3HHeJ_G0029001.1 mouse_genomes_project 5 15119670 15282691 + MGP_C3HHeJ_P0069885 Sema3c protein_coding protein_coding MGP_C3HHeJ_T0069886.1 MGP_C3HHeJ_G0029001.1 mouse_genomes_project 5 15120038 15235187 + MGP_C3HHeJ_P0069886 Sema3c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069887.1 MGP_C3HHeJ_G0029001.1 mouse_genomes_project 5 15120155 15123569 + Sema3c protein_coding retained_intron MGP_C3HHeJ_T0069888.1 MGP_C3HHeJ_G0029001.1 mouse_genomes_project 5 15120288 15225686 + MGP_C3HHeJ_P0069888 Sema3c protein_coding protein_coding MGP_C3HHeJ_T0069889.1 MGP_C3HHeJ_G0029001.1 mouse_genomes_project 5 15245643 15282688 + Sema3c protein_coding retained_intron MGP_C3HHeJ_T0001559.1 MGP_C3HHeJ_G0001485.1 mouse_genomes_project 5 51152934 51156528 - TEC TEC MGP_C3HHeJ_T0072451.1 MGP_C3HHeJ_G0029482.1 mouse_genomes_project 5 101285475 101315447 + MGP_C3HHeJ_P0072451 Enoph1 protein_coding protein_coding MGP_C3HHeJ_T0072452.1 MGP_C3HHeJ_G0029482.1 mouse_genomes_project 5 101285534 101315447 + MGP_C3HHeJ_P0072452 Enoph1 protein_coding protein_coding MGP_C3HHeJ_T0072453.1 MGP_C3HHeJ_G0029482.1 mouse_genomes_project 5 101285558 101308030 + Enoph1 protein_coding retained_intron MGP_C3HHeJ_T0072454.1 MGP_C3HHeJ_G0029482.1 mouse_genomes_project 5 101308644 101310885 + Enoph1 protein_coding processed_transcript MGP_C3HHeJ_T0004761.1 MGP_C3HHeJ_G0004093.1 mouse_genomes_project 5 127264745 127272149 + Pitpnm2os1 antisense antisense MGP_C3HHeJ_T0014985.1 MGP_C3HHeJ_G0013089.1 mouse_genomes_project 5 140827437 140829553 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014795.1 MGP_C3HHeJ_G0012899.1 mouse_genomes_project 5 53225806 53226884 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004622.1 MGP_C3HHeJ_G0003994.1 mouse_genomes_project 5 51564528 51565777 + Gm43685 antisense antisense MGP_C3HHeJ_T0073188.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116572196 116589145 - MGP_C3HHeJ_P0073188 Kctd10 protein_coding protein_coding MGP_C3HHeJ_T0073189.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116573091 116589126 - MGP_C3HHeJ_P0073189 Kctd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073190.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116574251 116589120 - MGP_C3HHeJ_P0073190 Kctd10 protein_coding protein_coding MGP_C3HHeJ_T0073191.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116574335 116580772 - Kctd10 protein_coding processed_transcript MGP_C3HHeJ_T0073192.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116575512 116577299 - Kctd10 protein_coding retained_intron MGP_C3HHeJ_T0073193.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116575532 116578837 - Kctd10 protein_coding retained_intron MGP_C3HHeJ_T0073194.1 MGP_C3HHeJ_G0029632.1 mouse_genomes_project 5 116575613 116577882 - Kctd10 protein_coding retained_intron MGP_C3HHeJ_T0074146.1 MGP_C3HHeJ_G0029799.1 mouse_genomes_project 5 127867101 127893132 + MGP_C3HHeJ_P0074146 Zfp664 protein_coding protein_coding MGP_C3HHeJ_T0074147.1 MGP_C3HHeJ_G0029799.1 mouse_genomes_project 5 127867174 127912351 + Zfp664 protein_coding processed_transcript MGP_C3HHeJ_T0074148.1 MGP_C3HHeJ_G0029799.1 mouse_genomes_project 5 127867449 127889809 + Zfp664 protein_coding processed_transcript MGP_C3HHeJ_T0074149.1 MGP_C3HHeJ_G0029799.1 mouse_genomes_project 5 127878581 127880726 + Zfp664 protein_coding processed_transcript MGP_C3HHeJ_T0074150.1 MGP_C3HHeJ_G0029799.1 mouse_genomes_project 5 127880398 127889979 + Zfp664 protein_coding processed_transcript MGP_C3HHeJ_T0074151.1 MGP_C3HHeJ_G0029799.1 mouse_genomes_project 5 127889068 127893132 + Zfp664 protein_coding processed_transcript MGP_C3HHeJ_T0070230.1 MGP_C3HHeJ_G0029070.1 mouse_genomes_project 5 26548358 26558778 - MGP_C3HHeJ_P0070230 Shh protein_coding protein_coding MGP_C3HHeJ_T0071218.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096384 44112589 - MGP_C3HHeJ_P0071218 Qdpr protein_coding protein_coding MGP_C3HHeJ_T0071219.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096391 44112534 - MGP_C3HHeJ_P0071219 Qdpr protein_coding protein_coding MGP_C3HHeJ_T0071220.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096408 44112515 - MGP_C3HHeJ_P0071220 Qdpr protein_coding unknown_likely_coding MGP_C3HHeJ_T0071221.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096416 44112645 - MGP_C3HHeJ_P0071221 Qdpr protein_coding protein_coding MGP_C3HHeJ_T0071222.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096416 44112584 - MGP_C3HHeJ_P0071222 Qdpr protein_coding protein_coding MGP_C3HHeJ_T0071223.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096416 44110586 - MGP_C3HHeJ_P0071223 Qdpr protein_coding protein_coding MGP_C3HHeJ_T0071224.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096416 44112378 - MGP_C3HHeJ_P0071224 Qdpr protein_coding protein_coding MGP_C3HHeJ_T0071225.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096508 44105950 - Qdpr protein_coding retained_intron MGP_C3HHeJ_T0071226.1 MGP_C3HHeJ_G0029231.1 mouse_genomes_project 5 44096863 44106972 - Qdpr protein_coding processed_transcript MGP_C3HHeJ_T0099474.1 MGP_C3HHeJ_G0037668.1 mouse_genomes_project 5 112734982 112735089 + Gm22583 snRNA snRNA MGP_C3HHeJ_T0004627.1 MGP_C3HHeJ_G0003999.1 mouse_genomes_project 5 65149989 65153669 - Gm42726 antisense antisense MGP_C3HHeJ_T0004821.1 MGP_C3HHeJ_G0004136.1 mouse_genomes_project 5 154201329 154203038 - Gm43151 antisense antisense MGP_C3HHeJ_T0001778.1 MGP_C3HHeJ_G0001702.1 mouse_genomes_project 5 125860660 125862239 - TEC TEC MGP_C3HHeJ_T0070979.1 MGP_C3HHeJ_G0029189.1 mouse_genomes_project 5 34968591 34972178 + MGP_C3HHeJ_P0070979 Ccdc96 protein_coding protein_coding MGP_C3HHeJ_T0072862.1 MGP_C3HHeJ_G0029569.1 mouse_genomes_project 5 110919450 110926916 - MGP_C3HHeJ_P0072862 protein_coding protein_coding MGP_C3HHeJ_T0075429.1 MGP_C3HHeJ_G0030050.1 mouse_genomes_project 5 149102691 149112651 - Smurf1 protein_coding retained_intron MGP_C3HHeJ_T0075430.1 MGP_C3HHeJ_G0030050.1 mouse_genomes_project 5 149102691 149196496 - MGP_C3HHeJ_P0075430 Smurf1 protein_coding protein_coding MGP_C3HHeJ_T0075431.1 MGP_C3HHeJ_G0030050.1 mouse_genomes_project 5 149102698 149196504 - MGP_C3HHeJ_P0075431 Smurf1 protein_coding protein_coding MGP_C3HHeJ_T0075432.1 MGP_C3HHeJ_G0030050.1 mouse_genomes_project 5 149105285 149196504 - MGP_C3HHeJ_P0075432 Smurf1 protein_coding protein_coding MGP_C3HHeJ_T0075433.1 MGP_C3HHeJ_G0030050.1 mouse_genomes_project 5 149110766 149127670 - MGP_C3HHeJ_P0075433 Smurf1 protein_coding protein_coding MGP_C3HHeJ_T0099444.1 MGP_C3HHeJ_G0037638.1 mouse_genomes_project 5 69632730 69632817 + Gm23661 snRNA snRNA MGP_C3HHeJ_T0014736.1 MGP_C3HHeJ_G0012840.1 mouse_genomes_project 5 24407203 24409016 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071303.1 MGP_C3HHeJ_G0029242.1 mouse_genomes_project 5 50444383 50547610 - MGP_C3HHeJ_P0071303 Ppargc1a protein_coding protein_coding MGP_C3HHeJ_T0071304.1 MGP_C3HHeJ_G0029242.1 mouse_genomes_project 5 50447786 50547699 - MGP_C3HHeJ_P0071304 Ppargc1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071305.1 MGP_C3HHeJ_G0029242.1 mouse_genomes_project 5 50448313 50561546 - MGP_C3HHeJ_P0071305 Ppargc1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071306.1 MGP_C3HHeJ_G0029242.1 mouse_genomes_project 5 50485380 50561568 - MGP_C3HHeJ_P0071306 Ppargc1a protein_coding protein_coding MGP_C3HHeJ_T0073105.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115897164 115929616 - MGP_C3HHeJ_P0073105 Sart3 protein_coding protein_coding MGP_C3HHeJ_T0073106.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115897166 115928824 - MGP_C3HHeJ_P0073106 Sart3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073107.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115899396 115900314 - Sart3 protein_coding retained_intron MGP_C3HHeJ_T0073108.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115900488 115910165 - Sart3 protein_coding processed_transcript MGP_C3HHeJ_T0073109.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115908956 115909480 - Sart3 protein_coding processed_transcript MGP_C3HHeJ_T0073110.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115909702 115912937 - Sart3 protein_coding retained_intron MGP_C3HHeJ_T0073111.1 MGP_C3HHeJ_G0029618.1 mouse_genomes_project 5 115910129 115915945 - Sart3 protein_coding processed_transcript MGP_C3HHeJ_T0014724.1 MGP_C3HHeJ_G0012828.1 mouse_genomes_project 5 21240702 21241327 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001636.1 MGP_C3HHeJ_G0001561.1 mouse_genomes_project 5 68657356 68660460 - TEC TEC MGP_C3HHeJ_T0001576.1 MGP_C3HHeJ_G0001502.1 mouse_genomes_project 5 57202176 57203643 + TEC TEC MGP_C3HHeJ_T0074001.1 MGP_C3HHeJ_G0029774.1 mouse_genomes_project 5 126892984 126896272 - MGP_C3HHeJ_P0074001 Hcar1 protein_coding protein_coding MGP_C3HHeJ_T0074490.1 MGP_C3HHeJ_G0029856.1 mouse_genomes_project 5 138048268 138082034 - MGP_C3HHeJ_P0074490 Limk1 protein_coding protein_coding MGP_C3HHeJ_T0074491.1 MGP_C3HHeJ_G0029856.1 mouse_genomes_project 5 138048269 138071700 - MGP_C3HHeJ_P0074491 Limk1 protein_coding protein_coding MGP_C3HHeJ_T0074492.1 MGP_C3HHeJ_G0029856.1 mouse_genomes_project 5 138048428 138071672 - MGP_C3HHeJ_P0074492 Limk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074493.1 MGP_C3HHeJ_G0029856.1 mouse_genomes_project 5 138052228 138057724 - MGP_C3HHeJ_P0074493 Limk1 protein_coding protein_coding MGP_C3HHeJ_T0074494.1 MGP_C3HHeJ_G0029856.1 mouse_genomes_project 5 138057462 138061938 - Limk1 protein_coding retained_intron MGP_C3HHeJ_T0074495.1 MGP_C3HHeJ_G0029856.1 mouse_genomes_project 5 138061691 138082010 - Limk1 protein_coding retained_intron MGP_C3HHeJ_T0071625.1 MGP_C3HHeJ_G0029296.1 mouse_genomes_project 5 67261445 67267566 + MGP_C3HHeJ_P0071625 Shisa3 protein_coding protein_coding MGP_C3HHeJ_T0071626.1 MGP_C3HHeJ_G0029296.1 mouse_genomes_project 5 67261532 67277088 + MGP_C3HHeJ_P0071626 Shisa3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010578.1 MGP_C3HHeJ_G0008711.1 mouse_genomes_project 5 5019403 5019512 + Gm22196 miRNA miRNA MGP_C3HHeJ_T0004696.1 MGP_C3HHeJ_G0004048.1 mouse_genomes_project 5 110665035 110771953 + antisense antisense MGP_C3HHeJ_T0001514.1 MGP_C3HHeJ_G0001441.1 mouse_genomes_project 5 44445929 44448087 - TEC TEC MGP_C3HHeJ_T0074731.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140294549 140458046 - MGP_C3HHeJ_P0074731 Col26a1 protein_coding protein_coding MGP_C3HHeJ_T0074732.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140294549 140458109 - MGP_C3HHeJ_P0074732 Col26a1 protein_coding protein_coding MGP_C3HHeJ_T0074733.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140295545 140298252 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0074734.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140295864 140301404 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0074735.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140307335 140457835 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0074736.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140308054 140309201 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0074737.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140312729 140458134 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0074738.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140312903 140332021 - Col26a1 protein_coding processed_transcript MGP_C3HHeJ_T0074739.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140320373 140457668 - Col26a1 protein_coding processed_transcript MGP_C3HHeJ_T0074740.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140406638 140410140 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0074741.1 MGP_C3HHeJ_G0029902.1 mouse_genomes_project 5 140407418 140457855 - Col26a1 protein_coding retained_intron MGP_C3HHeJ_T0072513.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102090516 102106255 - MGP_C3HHeJ_P0072513 Fam175a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072514.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102090516 102106280 - MGP_C3HHeJ_P0072514 Fam175a protein_coding protein_coding MGP_C3HHeJ_T0072515.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102090516 102106258 - MGP_C3HHeJ_P0072515 Fam175a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072516.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102090516 102106255 - MGP_C3HHeJ_P0072516 Fam175a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072517.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102090527 102106255 - MGP_C3HHeJ_P0072517 Fam175a protein_coding protein_coding MGP_C3HHeJ_T0072518.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102091645 102092635 - Fam175a protein_coding retained_intron MGP_C3HHeJ_T0072519.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102095108 102106256 - MGP_C3HHeJ_P0072519 Fam175a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072520.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102103067 102106262 - Fam175a protein_coding retained_intron MGP_C3HHeJ_T0072521.1 MGP_C3HHeJ_G0029492.1 mouse_genomes_project 5 102103674 102106255 - Fam175a protein_coding retained_intron MGP_C3HHeJ_T0098480.1 MGP_C3HHeJ_G0036685.1 mouse_genomes_project 5 408087 408839 + Gm43017 sense_intronic sense_intronic MGP_C3HHeJ_T0017899.1 MGP_C3HHeJ_G0015352.1 mouse_genomes_project 5 28733281 28748642 - Gm9899 processed_transcript lincRNA MGP_C3HHeJ_T0017900.1 MGP_C3HHeJ_G0015352.1 mouse_genomes_project 5 28736761 28737320 - Gm9899 processed_transcript pseudogene MGP_C3HHeJ_T0017901.1 MGP_C3HHeJ_G0015352.1 mouse_genomes_project 5 28737243 28739150 - Gm9899 processed_transcript retained_intron MGP_C3HHeJ_T0075356.1 MGP_C3HHeJ_G0030034.1 mouse_genomes_project 5 148058672 148096984 + MGP_C3HHeJ_P0075356 Eif2ak1 protein_coding protein_coding MGP_C3HHeJ_T0075357.1 MGP_C3HHeJ_G0030034.1 mouse_genomes_project 5 148058715 148073250 + Eif2ak1 protein_coding retained_intron MGP_C3HHeJ_T0075358.1 MGP_C3HHeJ_G0030034.1 mouse_genomes_project 5 148058831 148066294 + Eif2ak1 protein_coding retained_intron MGP_C3HHeJ_T0004826.1 MGP_C3HHeJ_G0004141.1 mouse_genomes_project 5 155422429 155428647 - Gm42529 antisense antisense MGP_C3HHeJ_T0074706.1 MGP_C3HHeJ_G0029899.1 mouse_genomes_project 5 139757547 139785230 - MGP_C3HHeJ_P0074706 Sh2b2 protein_coding protein_coding MGP_C3HHeJ_T0074707.1 MGP_C3HHeJ_G0029899.1 mouse_genomes_project 5 139757549 139785279 - MGP_C3HHeJ_P0074707 Sh2b2 protein_coding protein_coding MGP_C3HHeJ_T0074708.1 MGP_C3HHeJ_G0029899.1 mouse_genomes_project 5 139759767 139762063 - Sh2b2 protein_coding retained_intron MGP_C3HHeJ_T0074709.1 MGP_C3HHeJ_G0029899.1 mouse_genomes_project 5 139763169 139785213 - MGP_C3HHeJ_P0074709 Sh2b2 protein_coding protein_coding MGP_C3HHeJ_T0074710.1 MGP_C3HHeJ_G0029899.1 mouse_genomes_project 5 139772835 139786933 - MGP_C3HHeJ_P0074710 Sh2b2 protein_coding protein_coding MGP_C3HHeJ_T0072318.1 MGP_C3HHeJ_G0029451.1 mouse_genomes_project 5 93260100 93320026 - MGP_C3HHeJ_P0072318 Scarb2 protein_coding protein_coding MGP_C3HHeJ_T0072319.1 MGP_C3HHeJ_G0029451.1 mouse_genomes_project 5 93319189 93321222 - Scarb2 protein_coding retained_intron MGP_C3HHeJ_T0001706.1 MGP_C3HHeJ_G0001630.1 mouse_genomes_project 5 105449599 105451861 - TEC TEC MGP_C3HHeJ_T0001406.1 MGP_C3HHeJ_G0001336.1 mouse_genomes_project 5 5879570 5885233 - TEC TEC MGP_C3HHeJ_T0070533.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29455991 29503902 - MGP_C3HHeJ_P0070533 Ift172 protein_coding protein_coding MGP_C3HHeJ_T0070534.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29455994 29457368 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070535.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29456267 29457525 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070536.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29464084 29464850 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070537.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29464958 29467527 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070538.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29466435 29467235 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070539.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29469942 29493119 - MGP_C3HHeJ_P0070539 Ift172 protein_coding protein_coding MGP_C3HHeJ_T0070540.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29484405 29494140 - MGP_C3HHeJ_P0070540 Ift172 protein_coding protein_coding MGP_C3HHeJ_T0070541.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29488207 29503834 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070542.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29498164 29499277 - Ift172 protein_coding retained_intron MGP_C3HHeJ_T0070543.1 MGP_C3HHeJ_G0029120.1 mouse_genomes_project 5 29498804 29503911 - MGP_C3HHeJ_P0070543 Ift172 protein_coding protein_coding MGP_C3HHeJ_T0014782.1 MGP_C3HHeJ_G0012886.1 mouse_genomes_project 5 42973196 42975089 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014718.1 MGP_C3HHeJ_G0012822.1 mouse_genomes_project 5 20716819 20717429 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001577.1 MGP_C3HHeJ_G0001503.1 mouse_genomes_project 5 57220225 57222088 + TEC TEC MGP_C3HHeJ_T0099476.1 MGP_C3HHeJ_G0037670.1 mouse_genomes_project 5 116092565 116092646 - Gm22056 snRNA snRNA MGP_C3HHeJ_T0001541.1 MGP_C3HHeJ_G0001467.1 mouse_genomes_project 5 48023265 48025516 - TEC TEC MGP_C3HHeJ_T0069808.1 MGP_C3HHeJ_G0028988.1 mouse_genomes_project 5 6051779 6121167 + MGP_C3HHeJ_P0069808 Abcb4 protein_coding protein_coding MGP_C3HHeJ_T0069809.1 MGP_C3HHeJ_G0028988.1 mouse_genomes_project 5 6051783 6059349 + Abcb4 protein_coding retained_intron MGP_C3HHeJ_T0069810.1 MGP_C3HHeJ_G0028988.1 mouse_genomes_project 5 6052011 6101468 + MGP_C3HHeJ_P0069810 Abcb4 protein_coding protein_coding MGP_C3HHeJ_T0069811.1 MGP_C3HHeJ_G0028988.1 mouse_genomes_project 5 6087894 6092424 + Abcb4 protein_coding retained_intron MGP_C3HHeJ_T0069812.1 MGP_C3HHeJ_G0028988.1 mouse_genomes_project 5 6120492 6121172 + Abcb4 protein_coding retained_intron MGP_C3HHeJ_T0004608.1 MGP_C3HHeJ_G0003984.1 mouse_genomes_project 5 42509789 42510460 - Gm16015 antisense antisense MGP_C3HHeJ_T0001798.1 MGP_C3HHeJ_G0001721.1 mouse_genomes_project 5 131373542 131375489 - TEC TEC MGP_C3HHeJ_T0001759.1 MGP_C3HHeJ_G0001683.1 mouse_genomes_project 5 122154342 122156702 - TEC TEC MGP_C3HHeJ_T0014780.1 MGP_C3HHeJ_G0012884.1 mouse_genomes_project 5 42521144 42522906 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075394.1 MGP_C3HHeJ_G0030043.1 mouse_genomes_project 5 148397938 148402056 + MGP_C3HHeJ_P0075394 Bhlha15 protein_coding protein_coding MGP_C3HHeJ_T0072865.1 MGP_C3HHeJ_G0029572.1 mouse_genomes_project 5 111403506 111408415 - MGP_C3HHeJ_P0072865 Crlf2 protein_coding protein_coding MGP_C3HHeJ_T0072866.1 MGP_C3HHeJ_G0029572.1 mouse_genomes_project 5 111403510 111408466 - MGP_C3HHeJ_P0072866 Crlf2 protein_coding protein_coding MGP_C3HHeJ_T0072867.1 MGP_C3HHeJ_G0029572.1 mouse_genomes_project 5 111403512 111405966 - MGP_C3HHeJ_P0072867 Crlf2 protein_coding protein_coding MGP_C3HHeJ_T0008331.1 MGP_C3HHeJ_G0006749.1 mouse_genomes_project 5 140781645 140802597 - lincRNA lincRNA MGP_C3HHeJ_T0010606.1 MGP_C3HHeJ_G0008739.1 mouse_genomes_project 5 83233486 83233628 - Mir1187 miRNA miRNA MGP_C3HHeJ_T0001836.1 MGP_C3HHeJ_G0001759.1 mouse_genomes_project 5 136729689 136730611 + TEC TEC MGP_C3HHeJ_T0070948.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216819 34345952 + MGP_C3HHeJ_P0070948 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070949.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216819 34346459 + MGP_C3HHeJ_P0070949 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070950.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216863 34345635 + MGP_C3HHeJ_P0070950 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070951.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216870 34345951 + MGP_C3HHeJ_P0070951 Ablim2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070952.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216870 34346459 + MGP_C3HHeJ_P0070952 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070953.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216905 34345952 + MGP_C3HHeJ_P0070953 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070954.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34216990 34344905 + MGP_C3HHeJ_P0070954 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070955.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34273265 34303360 + MGP_C3HHeJ_P0070955 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070956.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34273332 34344905 + MGP_C3HHeJ_P0070956 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070957.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34273346 34293254 + MGP_C3HHeJ_P0070957 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070958.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34288471 34336378 + MGP_C3HHeJ_P0070958 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070959.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34288502 34301683 + Ablim2 protein_coding retained_intron MGP_C3HHeJ_T0070960.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34288502 34319158 + MGP_C3HHeJ_P0070960 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070961.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34301503 34319485 + MGP_C3HHeJ_P0070961 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0070962.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34310108 34330971 + Ablim2 protein_coding retained_intron MGP_C3HHeJ_T0070963.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34318364 34319485 + Ablim2 protein_coding retained_intron MGP_C3HHeJ_T0070964.1 MGP_C3HHeJ_G0029183.1 mouse_genomes_project 5 34319192 34345005 + MGP_C3HHeJ_P0070964 Ablim2 protein_coding protein_coding MGP_C3HHeJ_T0074948.1 MGP_C3HHeJ_G0029944.1 mouse_genomes_project 5 141627516 141638163 - MGP_C3HHeJ_P0074948 Gjc3 protein_coding protein_coding MGP_C3HHeJ_T0074949.1 MGP_C3HHeJ_G0029944.1 mouse_genomes_project 5 141637576 141638160 - Gjc3 protein_coding retained_intron MGP_C3HHeJ_T0001678.1 MGP_C3HHeJ_G0001602.1 mouse_genomes_project 5 92547979 92548801 - TEC TEC MGP_C3HHeJ_T0072508.1 MGP_C3HHeJ_G0029491.1 mouse_genomes_project 5 102083530 102084477 + Mrps18c protein_coding retained_intron MGP_C3HHeJ_T0072509.1 MGP_C3HHeJ_G0029491.1 mouse_genomes_project 5 102083530 102089793 + MGP_C3HHeJ_P0072509 Mrps18c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072510.1 MGP_C3HHeJ_G0029491.1 mouse_genomes_project 5 102083534 102089796 + MGP_C3HHeJ_P0072510 Mrps18c protein_coding protein_coding MGP_C3HHeJ_T0072511.1 MGP_C3HHeJ_G0029491.1 mouse_genomes_project 5 102083557 102089733 + MGP_C3HHeJ_P0072511 Mrps18c protein_coding protein_coding MGP_C3HHeJ_T0072512.1 MGP_C3HHeJ_G0029491.1 mouse_genomes_project 5 102089234 102089794 + Mrps18c protein_coding retained_intron MGP_C3HHeJ_T0001700.1 MGP_C3HHeJ_G0001624.1 mouse_genomes_project 5 103287487 103288832 + TEC TEC MGP_C3HHeJ_T0075159.1 MGP_C3HHeJ_G0029989.1 mouse_genomes_project 5 143776524 143795848 - MGP_C3HHeJ_P0075159 Gm26938 protein_coding protein_coding MGP_C3HHeJ_T0001470.1 MGP_C3HHeJ_G0001397.1 mouse_genomes_project 5 32106096 32109673 - TEC TEC MGP_C3HHeJ_T0008332.1 MGP_C3HHeJ_G0006750.1 mouse_genomes_project 5 140802968 140810152 + lincRNA lincRNA MGP_C3HHeJ_T0008248.1 MGP_C3HHeJ_G0006697.1 mouse_genomes_project 5 120892339 120892861 - Gm28563 lincRNA lincRNA MGP_C3HHeJ_T0010624.1 MGP_C3HHeJ_G0008757.1 mouse_genomes_project 5 117986358 117986418 + Mir7030 miRNA miRNA MGP_C3HHeJ_T0001573.1 MGP_C3HHeJ_G0001499.1 mouse_genomes_project 5 57063633 57065580 + TEC TEC MGP_C3HHeJ_T0074360.1 MGP_C3HHeJ_G0029840.1 mouse_genomes_project 5 133578860 134080284 + MGP_C3HHeJ_P0074360 Caln1 protein_coding protein_coding MGP_C3HHeJ_T0074363.1 MGP_C3HHeJ_G0029840.1 mouse_genomes_project 5 133596378 133727924 + MGP_C3HHeJ_P0074363 Caln1 protein_coding protein_coding MGP_C3HHeJ_T0074364.1 MGP_C3HHeJ_G0029840.1 mouse_genomes_project 5 133666930 133845729 + MGP_C3HHeJ_P0074364 Caln1 protein_coding protein_coding MGP_C3HHeJ_T0074365.1 MGP_C3HHeJ_G0029840.1 mouse_genomes_project 5 133667493 134080746 + MGP_C3HHeJ_P0074365 Caln1 protein_coding protein_coding MGP_C3HHeJ_T0074366.1 MGP_C3HHeJ_G0029840.1 mouse_genomes_project 5 133668282 134090193 + MGP_C3HHeJ_P0074366 Caln1 protein_coding protein_coding MGP_C3HHeJ_T0070060.1 MGP_C3HHeJ_G0029034.1 mouse_genomes_project 5 22262739 22297094 - MGP_C3HHeJ_P0070060 Kcnh2 protein_coding protein_coding MGP_C3HHeJ_T0070061.1 MGP_C3HHeJ_G0029034.1 mouse_genomes_project 5 22262739 22272728 - MGP_C3HHeJ_P0070061 Kcnh2 protein_coding protein_coding MGP_C3HHeJ_T0070062.1 MGP_C3HHeJ_G0029034.1 mouse_genomes_project 5 22263233 22265405 - Kcnh2 protein_coding processed_transcript MGP_C3HHeJ_T0070063.1 MGP_C3HHeJ_G0029034.1 mouse_genomes_project 5 22267640 22268940 - Kcnh2 protein_coding processed_transcript MGP_C3HHeJ_T0070064.1 MGP_C3HHeJ_G0029034.1 mouse_genomes_project 5 22268598 22269670 - Kcnh2 protein_coding processed_transcript MGP_C3HHeJ_T0101219.1 MGP_C3HHeJ_G0039352.1 mouse_genomes_project 5 44444767 44445646 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0069844.1 MGP_C3HHeJ_G0028993.1 mouse_genomes_project 5 6662114 6909443 - MGP_C3HHeJ_P0069844 Grm3 protein_coding protein_coding MGP_C3HHeJ_T0007999.1 MGP_C3HHeJ_G0006520.1 mouse_genomes_project 5 29806509 29814770 - Gm43660 lincRNA lincRNA MGP_C3HHeJ_T0004664.1 MGP_C3HHeJ_G0004031.1 mouse_genomes_project 5 99364819 99367669 - A730035I17Rik antisense antisense MGP_C3HHeJ_T0004665.1 MGP_C3HHeJ_G0004031.1 mouse_genomes_project 5 99364835 99366895 - A730035I17Rik antisense antisense MGP_C3HHeJ_T0004666.1 MGP_C3HHeJ_G0004031.1 mouse_genomes_project 5 99365722 99367467 - A730035I17Rik antisense antisense MGP_C3HHeJ_T0004667.1 MGP_C3HHeJ_G0004031.1 mouse_genomes_project 5 99366145 99366898 - A730035I17Rik antisense antisense MGP_C3HHeJ_T0004668.1 MGP_C3HHeJ_G0004031.1 mouse_genomes_project 5 99366980 99367669 - A730035I17Rik antisense pseudogene MGP_C3HHeJ_T0075143.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143718120 143742470 - MGP_C3HHeJ_P0075143 Ints1 protein_coding protein_coding MGP_C3HHeJ_T0075144.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143718123 143721697 - Ints1 protein_coding retained_intron MGP_C3HHeJ_T0075145.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143718123 143742435 - MGP_C3HHeJ_P0075145 Ints1 protein_coding protein_coding MGP_C3HHeJ_T0075146.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143718124 143721817 - MGP_C3HHeJ_P0075146 Ints1 protein_coding protein_coding MGP_C3HHeJ_T0075147.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143728425 143729334 - Ints1 protein_coding retained_intron MGP_C3HHeJ_T0075148.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143731922 143734737 - Ints1 protein_coding retained_intron MGP_C3HHeJ_T0075149.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143733936 143742471 - Ints1 protein_coding retained_intron MGP_C3HHeJ_T0075150.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143734262 143735293 - Ints1 protein_coding retained_intron MGP_C3HHeJ_T0075151.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143736222 143738580 - Ints1 protein_coding retained_intron MGP_C3HHeJ_T0075152.1 MGP_C3HHeJ_G0029986.1 mouse_genomes_project 5 143739466 143742471 - MGP_C3HHeJ_P0075152 Ints1 protein_coding protein_coding MGP_C3HHeJ_T0001799.1 MGP_C3HHeJ_G0001722.1 mouse_genomes_project 5 131430308 131434235 - TEC TEC MGP_C3HHeJ_T0014706.1 MGP_C3HHeJ_G0012810.1 mouse_genomes_project 5 19310858 19311657 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072200.1 MGP_C3HHeJ_G0029422.1 mouse_genomes_project 5 91262815 91286922 + MGP_C3HHeJ_P0072200 Afm protein_coding protein_coding MGP_C3HHeJ_T0072201.1 MGP_C3HHeJ_G0029422.1 mouse_genomes_project 5 91262832 91282434 + MGP_C3HHeJ_P0072201 Afm protein_coding protein_coding MGP_C3HHeJ_T0073222.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116940789 116955368 + MGP_C3HHeJ_P0073222 Tchp protein_coding protein_coding MGP_C3HHeJ_T0073223.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116940848 116942478 + Tchp protein_coding processed_transcript MGP_C3HHeJ_T0073224.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116940893 116955368 + Tchp protein_coding retained_intron MGP_C3HHeJ_T0073225.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116944111 116946949 + Tchp protein_coding retained_intron MGP_C3HHeJ_T0073226.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116947681 116952730 + MGP_C3HHeJ_P0073226 Tchp protein_coding protein_coding MGP_C3HHeJ_T0073227.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116948004 116955368 + Tchp protein_coding processed_transcript MGP_C3HHeJ_T0073228.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116950593 116951760 + Tchp protein_coding retained_intron MGP_C3HHeJ_T0073229.1 MGP_C3HHeJ_G0029639.1 mouse_genomes_project 5 116952724 116954199 + Tchp protein_coding retained_intron MGP_C3HHeJ_T0072864.1 MGP_C3HHeJ_G0029571.1 mouse_genomes_project 5 111166882 111203872 + MGP_C3HHeJ_P0072864 Vmn2r16 protein_coding protein_coding MGP_C3HHeJ_T0010600.1 MGP_C3HHeJ_G0008733.1 mouse_genomes_project 5 65583630 65583704 + Gm25952 miRNA miRNA MGP_C3HHeJ_T0001562.1 MGP_C3HHeJ_G0001488.1 mouse_genomes_project 5 51568601 51571003 - TEC TEC MGP_C3HHeJ_T0099471.1 MGP_C3HHeJ_G0037665.1 mouse_genomes_project 5 108320199 108320321 + Gm24191 snRNA snRNA MGP_C3HHeJ_T0102029.1 MGP_C3HHeJ_G0039994.1 mouse_genomes_project 5 13281225 13282258 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014798.1 MGP_C3HHeJ_G0012902.1 mouse_genomes_project 5 54152811 54153640 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014683.1 MGP_C3HHeJ_G0012787.1 mouse_genomes_project 5 7972133 7972389 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074889.1 MGP_C3HHeJ_G0029931.1 mouse_genomes_project 5 141276266 141289986 + MGP_C3HHeJ_P0074889 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072354.1 MGP_C3HHeJ_G0029458.1 mouse_genomes_project 5 94018927 94050554 - MGP_C3HHeJ_P0072354 Ccni protein_coding protein_coding MGP_C3HHeJ_T0072355.1 MGP_C3HHeJ_G0029458.1 mouse_genomes_project 5 94023801 94024570 - Ccni protein_coding retained_intron MGP_C3HHeJ_T0072356.1 MGP_C3HHeJ_G0029458.1 mouse_genomes_project 5 94024110 94046850 - MGP_C3HHeJ_P0072356 Ccni protein_coding protein_coding MGP_C3HHeJ_T0072357.1 MGP_C3HHeJ_G0029458.1 mouse_genomes_project 5 94033257 94050487 - MGP_C3HHeJ_P0072357 Ccni protein_coding protein_coding MGP_C3HHeJ_T0074216.1 MGP_C3HHeJ_G0029812.1 mouse_genomes_project 5 130904608 131572564 - MGP_C3HHeJ_P0074216 Tmem132d protein_coding protein_coding MGP_C3HHeJ_T0074217.1 MGP_C3HHeJ_G0029812.1 mouse_genomes_project 5 131402869 131409944 - Tmem132d protein_coding processed_transcript MGP_C3HHeJ_T0074218.1 MGP_C3HHeJ_G0029812.1 mouse_genomes_project 5 131402974 131409882 - Tmem132d protein_coding processed_transcript MGP_C3HHeJ_T0008375.1 MGP_C3HHeJ_G0006787.1 mouse_genomes_project 5 153894941 153896315 + Gm42787 lincRNA lincRNA MGP_C3HHeJ_T0008306.1 MGP_C3HHeJ_G0006734.1 mouse_genomes_project 5 130311297 130311702 - Gm43476 lincRNA lincRNA MGP_C3HHeJ_T0098494.1 MGP_C3HHeJ_G0036699.1 mouse_genomes_project 5 46890389 46892529 + Gm20475 sense_intronic sense_intronic MGP_C3HHeJ_T0070328.1 MGP_C3HHeJ_G0029090.1 mouse_genomes_project 5 28748192 28787715 + MGP_C3HHeJ_P0070328 Kcnk3 protein_coding protein_coding MGP_C3HHeJ_T0070329.1 MGP_C3HHeJ_G0029090.1 mouse_genomes_project 5 28783794 28784654 + Kcnk3 protein_coding processed_transcript MGP_C3HHeJ_T0001687.1 MGP_C3HHeJ_G0001611.1 mouse_genomes_project 5 98053905 98054451 - TEC TEC MGP_C3HHeJ_T0099486.1 MGP_C3HHeJ_G0037680.1 mouse_genomes_project 5 129479563 129479670 - Gm23151 snRNA snRNA MGP_C3HHeJ_T0001786.1 MGP_C3HHeJ_G0001710.1 mouse_genomes_project 5 127025638 127027142 + TEC TEC MGP_C3HHeJ_T0014846.1 MGP_C3HHeJ_G0012950.1 mouse_genomes_project 5 75257987 75258315 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010638.1 MGP_C3HHeJ_G0008771.1 mouse_genomes_project 5 139644781 139644863 + Mir7035 miRNA miRNA MGP_C3HHeJ_T0101234.1 MGP_C3HHeJ_G0039363.1 mouse_genomes_project 5 88415290 88417939 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101235.1 MGP_C3HHeJ_G0039363.1 mouse_genomes_project 5 88415449 88416574 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0008142.1 MGP_C3HHeJ_G0006631.1 mouse_genomes_project 5 101448124 101452237 + Gm9932 lincRNA lincRNA MGP_C3HHeJ_T0014753.1 MGP_C3HHeJ_G0012857.1 mouse_genomes_project 5 30570293 30570482 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072195.1 MGP_C3HHeJ_G0029421.1 mouse_genomes_project 5 91233064 91253016 + MGP_C3HHeJ_P0072195 Afp protein_coding protein_coding MGP_C3HHeJ_T0072196.1 MGP_C3HHeJ_G0029421.1 mouse_genomes_project 5 91233066 91240172 + MGP_C3HHeJ_P0072196 Afp protein_coding protein_coding MGP_C3HHeJ_T0072197.1 MGP_C3HHeJ_G0029421.1 mouse_genomes_project 5 91235350 91240222 + Afp protein_coding retained_intron MGP_C3HHeJ_T0072198.1 MGP_C3HHeJ_G0029421.1 mouse_genomes_project 5 91245642 91248281 + Afp protein_coding retained_intron MGP_C3HHeJ_T0072199.1 MGP_C3HHeJ_G0029421.1 mouse_genomes_project 5 91251540 91252962 + Afp protein_coding retained_intron MGP_C3HHeJ_T0001847.1 MGP_C3HHeJ_G0001769.1 mouse_genomes_project 5 139083440 139086647 - TEC TEC MGP_C3HHeJ_T0070250.1 MGP_C3HHeJ_G0029073.1 mouse_genomes_project 5 27538326 27561843 + MGP_C3HHeJ_P0070250 Nom1 protein_coding protein_coding MGP_C3HHeJ_T0070251.1 MGP_C3HHeJ_G0029073.1 mouse_genomes_project 5 27544993 27550021 + Nom1 protein_coding retained_intron MGP_C3HHeJ_T0014705.1 MGP_C3HHeJ_G0012809.1 mouse_genomes_project 5 18981747 18982099 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072968.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112752050 112758363 - MGP_C3HHeJ_P0072968 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072969.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112752050 112759055 - MGP_C3HHeJ_P0072969 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072970.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112752050 112758992 - MGP_C3HHeJ_P0072970 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072971.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112752050 112758992 - MGP_C3HHeJ_P0072971 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072972.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112752051 112759011 - MGP_C3HHeJ_P0072972 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072973.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112753919 112758542 - MGP_C3HHeJ_P0072973 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072974.1 MGP_C3HHeJ_G0029589.1 mouse_genomes_project 5 112753928 112758987 - MGP_C3HHeJ_P0072974 Pus1 protein_coding protein_coding MGP_C3HHeJ_T0072376.1 MGP_C3HHeJ_G0029463.1 mouse_genomes_project 5 97323201 97380738 + MGP_C3HHeJ_P0072376 Mrpl1 protein_coding protein_coding MGP_C3HHeJ_T0072377.1 MGP_C3HHeJ_G0029463.1 mouse_genomes_project 5 97323823 97380720 + MGP_C3HHeJ_P0072377 Mrpl1 protein_coding protein_coding MGP_C3HHeJ_T0072378.1 MGP_C3HHeJ_G0029463.1 mouse_genomes_project 5 97323852 97353763 + MGP_C3HHeJ_P0072378 Mrpl1 protein_coding protein_coding MGP_C3HHeJ_T0098143.1 MGP_C3HHeJ_G0036355.1 mouse_genomes_project 5 52419656 52419770 - n-R5s172 rRNA rRNA MGP_C3HHeJ_T0001535.1 MGP_C3HHeJ_G0001461.1 mouse_genomes_project 5 47924291 47925586 - TEC TEC MGP_C3HHeJ_T0075502.1 MGP_C3HHeJ_G0030064.1 mouse_genomes_project 5 149738793 149811248 - MGP_C3HHeJ_P0075502 protein_coding protein_coding MGP_C3HHeJ_T0008354.1 MGP_C3HHeJ_G0006769.1 mouse_genomes_project 5 150728401 150729940 - Gm43625 lincRNA lincRNA MGP_C3HHeJ_T0008250.1 MGP_C3HHeJ_G0006699.1 mouse_genomes_project 5 121454275 121462127 + Gm43342 lincRNA lincRNA MGP_C3HHeJ_T0102040.1 MGP_C3HHeJ_G0040005.1 mouse_genomes_project 5 87736520 87749146 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099467.1 MGP_C3HHeJ_G0037661.1 mouse_genomes_project 5 105016776 105016947 + Gm25721 snRNA snRNA MGP_C3HHeJ_T0008303.1 MGP_C3HHeJ_G0006732.1 mouse_genomes_project 5 130221947 130222735 + Gm43475 lincRNA lincRNA MGP_C3HHeJ_T0008165.1 MGP_C3HHeJ_G0006645.1 mouse_genomes_project 5 106991160 106995786 + Gm42749 lincRNA lincRNA MGP_C3HHeJ_T0008166.1 MGP_C3HHeJ_G0006645.1 mouse_genomes_project 5 106995159 106997544 + Gm42749 lincRNA lincRNA MGP_C3HHeJ_T0075200.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144709893 144752931 - MGP_C3HHeJ_P0075200 Iqce protein_coding protein_coding MGP_C3HHeJ_T0075201.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144711571 144714303 - Iqce protein_coding retained_intron MGP_C3HHeJ_T0075202.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144711571 144752818 - Iqce protein_coding retained_intron MGP_C3HHeJ_T0075203.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144713341 144752892 - MGP_C3HHeJ_P0075203 Iqce protein_coding protein_coding MGP_C3HHeJ_T0075204.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144714090 144732773 - MGP_C3HHeJ_P0075204 Iqce protein_coding protein_coding MGP_C3HHeJ_T0075205.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144714219 144717419 - Iqce protein_coding retained_intron MGP_C3HHeJ_T0075206.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144732311 144739157 - Iqce protein_coding retained_intron MGP_C3HHeJ_T0075207.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144733077 144752829 - Iqce protein_coding retained_intron MGP_C3HHeJ_T0075208.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144739153 144752522 - Iqce protein_coding processed_transcript MGP_C3HHeJ_T0075209.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144739158 144752931 - MGP_C3HHeJ_P0075209 Iqce protein_coding protein_coding MGP_C3HHeJ_T0075210.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144741973 144752853 - MGP_C3HHeJ_P0075210 Iqce protein_coding protein_coding MGP_C3HHeJ_T0075211.1 MGP_C3HHeJ_G0030001.1 mouse_genomes_project 5 144742371 144752847 - Iqce protein_coding retained_intron MGP_C3HHeJ_T0072335.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93498817 93791379 + MGP_C3HHeJ_P0072335 Shroom3 protein_coding protein_coding MGP_C3HHeJ_T0072336.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93499007 93790829 + MGP_C3HHeJ_P0072336 Shroom3 protein_coding protein_coding MGP_C3HHeJ_T0072337.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93624313 93631861 + Shroom3 protein_coding processed_transcript MGP_C3HHeJ_T0072338.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93631842 93658261 + Shroom3 protein_coding processed_transcript MGP_C3HHeJ_T0072339.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93740371 93790644 + MGP_C3HHeJ_P0072339 Shroom3 protein_coding protein_coding MGP_C3HHeJ_T0072340.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93751424 93766447 + MGP_C3HHeJ_P0072340 Shroom3 protein_coding protein_coding MGP_C3HHeJ_T0072341.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93764623 93768239 + Shroom3 protein_coding retained_intron MGP_C3HHeJ_T0072342.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93773902 93774813 + Shroom3 protein_coding retained_intron MGP_C3HHeJ_T0072343.1 MGP_C3HHeJ_G0029455.1 mouse_genomes_project 5 93788146 93790857 + Shroom3 protein_coding retained_intron MGP_C3HHeJ_T0070294.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28317619 28352939 + MGP_C3HHeJ_P0070294 Hadhb protein_coding protein_coding MGP_C3HHeJ_T0070295.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28317629 28343304 + MGP_C3HHeJ_P0070295 Hadhb protein_coding protein_coding MGP_C3HHeJ_T0070296.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28317643 28352932 + MGP_C3HHeJ_P0070296 Hadhb protein_coding protein_coding MGP_C3HHeJ_T0070297.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28317643 28352928 + MGP_C3HHeJ_P0070297 Hadhb protein_coding protein_coding MGP_C3HHeJ_T0070298.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28317646 28336624 + Hadhb protein_coding retained_intron MGP_C3HHeJ_T0070299.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28317674 28345242 + MGP_C3HHeJ_P0070299 Hadhb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070300.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28343308 28347440 + Hadhb protein_coding retained_intron MGP_C3HHeJ_T0070301.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28346906 28349321 + Hadhb protein_coding retained_intron MGP_C3HHeJ_T0070302.1 MGP_C3HHeJ_G0029083.1 mouse_genomes_project 5 28348577 28352582 + Hadhb protein_coding retained_intron MGP_C3HHeJ_T0001766.1 MGP_C3HHeJ_G0001690.1 mouse_genomes_project 5 124291136 124292225 + TEC TEC MGP_C3HHeJ_T0001560.1 MGP_C3HHeJ_G0001486.1 mouse_genomes_project 5 51188337 51189723 - TEC TEC MGP_C3HHeJ_T0001808.1 MGP_C3HHeJ_G0001731.1 mouse_genomes_project 5 133426440 133427881 + TEC TEC MGP_C3HHeJ_T0073427.1 MGP_C3HHeJ_G0029675.1 mouse_genomes_project 5 118495837 118671384 - MGP_C3HHeJ_P0073427 Ccdc60 protein_coding protein_coding MGP_C3HHeJ_T0073428.1 MGP_C3HHeJ_G0029675.1 mouse_genomes_project 5 118546413 118671362 - MGP_C3HHeJ_P0073428 Ccdc60 protein_coding protein_coding MGP_C3HHeJ_T0074278.1 MGP_C3HHeJ_G0029824.1 mouse_genomes_project 5 132937428 132975580 + MGP_C3HHeJ_P0074278 Gbas protein_coding protein_coding MGP_C3HHeJ_T0074279.1 MGP_C3HHeJ_G0029824.1 mouse_genomes_project 5 132937464 132975503 + MGP_C3HHeJ_P0074279 Gbas protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074280.1 MGP_C3HHeJ_G0029824.1 mouse_genomes_project 5 132937466 132974626 + MGP_C3HHeJ_P0074280 Gbas protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074281.1 MGP_C3HHeJ_G0029824.1 mouse_genomes_project 5 132968730 132974455 + Gbas protein_coding retained_intron MGP_C3HHeJ_T0074282.1 MGP_C3HHeJ_G0029824.1 mouse_genomes_project 5 132969302 132970937 + Gbas protein_coding processed_transcript MGP_C3HHeJ_T0102044.1 MGP_C3HHeJ_G0040009.1 mouse_genomes_project 5 88744652 88858629 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001642.1 MGP_C3HHeJ_G0001567.1 mouse_genomes_project 5 68994901 68997702 - TEC TEC MGP_C3HHeJ_T0014864.1 MGP_C3HHeJ_G0012968.1 mouse_genomes_project 5 85341402 85342069 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075140.1 MGP_C3HHeJ_G0029985.1 mouse_genomes_project 5 143672330 143704129 - MGP_C3HHeJ_P0075140 Micall2 protein_coding protein_coding MGP_C3HHeJ_T0075141.1 MGP_C3HHeJ_G0029985.1 mouse_genomes_project 5 143672528 143675606 - Micall2 protein_coding retained_intron MGP_C3HHeJ_T0075142.1 MGP_C3HHeJ_G0029985.1 mouse_genomes_project 5 143675513 143676998 - MGP_C3HHeJ_P0075142 Micall2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074780.1 MGP_C3HHeJ_G0029912.1 mouse_genomes_project 5 140750275 140764643 - MGP_C3HHeJ_P0074780 Muc3 protein_coding protein_coding MGP_C3HHeJ_T0074781.1 MGP_C3HHeJ_G0029912.1 mouse_genomes_project 5 140750314 140754481 - Muc3 protein_coding processed_transcript MGP_C3HHeJ_T0074755.1 MGP_C3HHeJ_G0029906.1 mouse_genomes_project 5 140567479 140573315 - MGP_C3HHeJ_P0074755 Znhit1 protein_coding protein_coding MGP_C3HHeJ_T0074756.1 MGP_C3HHeJ_G0029906.1 mouse_genomes_project 5 140567504 140572194 - MGP_C3HHeJ_P0074756 Znhit1 protein_coding protein_coding MGP_C3HHeJ_T0074757.1 MGP_C3HHeJ_G0029906.1 mouse_genomes_project 5 140567509 140572116 - MGP_C3HHeJ_P0074757 Znhit1 protein_coding protein_coding MGP_C3HHeJ_T0074758.1 MGP_C3HHeJ_G0029906.1 mouse_genomes_project 5 140567636 140572519 - MGP_C3HHeJ_P0074758 Znhit1 protein_coding protein_coding MGP_C3HHeJ_T0074759.1 MGP_C3HHeJ_G0029906.1 mouse_genomes_project 5 140568205 140572795 - MGP_C3HHeJ_P0074759 Znhit1 protein_coding protein_coding MGP_C3HHeJ_T0014996.1 MGP_C3HHeJ_G0013100.1 mouse_genomes_project 5 142439257 142440115 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004756.1 MGP_C3HHeJ_G0004091.1 mouse_genomes_project 5 126398721 126403037 - Gm15747 antisense antisense MGP_C3HHeJ_T0004757.1 MGP_C3HHeJ_G0004091.1 mouse_genomes_project 5 126398732 126400138 - Gm15747 antisense antisense MGP_C3HHeJ_T0001655.1 MGP_C3HHeJ_G0001579.1 mouse_genomes_project 5 73597214 73597790 - TEC TEC MGP_C3HHeJ_T0008099.1 MGP_C3HHeJ_G0006595.1 mouse_genomes_project 5 77182715 77188778 - Gm15831 lincRNA lincRNA MGP_C3HHeJ_T0072489.1 MGP_C3HHeJ_G0029487.1 mouse_genomes_project 5 101829056 101849715 - MGP_C3HHeJ_P0072489 Plac8 protein_coding protein_coding MGP_C3HHeJ_T0072490.1 MGP_C3HHeJ_G0029487.1 mouse_genomes_project 5 101829057 101839935 - MGP_C3HHeJ_P0072490 Plac8 protein_coding protein_coding MGP_C3HHeJ_T0072491.1 MGP_C3HHeJ_G0029487.1 mouse_genomes_project 5 101829058 101840500 - MGP_C3HHeJ_P0072491 Plac8 protein_coding protein_coding MGP_C3HHeJ_T0072492.1 MGP_C3HHeJ_G0029487.1 mouse_genomes_project 5 101839513 101849662 - Plac8 protein_coding retained_intron MGP_C3HHeJ_T0074883.1 MGP_C3HHeJ_G0029929.1 mouse_genomes_project 5 141257479 141276094 - MGP_C3HHeJ_P0074883 Fbxo24 protein_coding protein_coding MGP_C3HHeJ_T0074884.1 MGP_C3HHeJ_G0029929.1 mouse_genomes_project 5 141257479 141271714 - MGP_C3HHeJ_P0074884 Fbxo24 protein_coding protein_coding MGP_C3HHeJ_T0074885.1 MGP_C3HHeJ_G0029929.1 mouse_genomes_project 5 141257482 141276048 - MGP_C3HHeJ_P0074885 Fbxo24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0097909.1 MGP_C3HHeJ_G0036121.1 mouse_genomes_project 5 43634856 43635238 - pseudogene pseudogene MGP_C3HHeJ_T0071486.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65001021 65048699 - MGP_C3HHeJ_P0071486 Smim14 protein_coding protein_coding MGP_C3HHeJ_T0071487.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65003845 65048359 - MGP_C3HHeJ_P0071487 Smim14 protein_coding protein_coding MGP_C3HHeJ_T0071488.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65003846 65048170 - MGP_C3HHeJ_P0071488 Smim14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071489.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65003969 65017055 - Smim14 protein_coding retained_intron MGP_C3HHeJ_T0071490.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65008773 65014263 - Smim14 protein_coding retained_intron MGP_C3HHeJ_T0071491.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65016309 65093539 - MGP_C3HHeJ_P0071491 Smim14 protein_coding protein_coding MGP_C3HHeJ_T0071492.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65022015 65093484 - Smim14 protein_coding retained_intron MGP_C3HHeJ_T0071493.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65023964 65048180 - Smim14 protein_coding retained_intron MGP_C3HHeJ_T0071494.1 MGP_C3HHeJ_G0029280.1 mouse_genomes_project 5 65045247 65048699 - Smim14 protein_coding retained_intron MGP_C3HHeJ_T0069794.1 MGP_C3HHeJ_G0028986.1 mouse_genomes_project 5 5810873 5895052 + MGP_C3HHeJ_P0069794 Abcb1a protein_coding protein_coding MGP_C3HHeJ_T0069795.1 MGP_C3HHeJ_G0028986.1 mouse_genomes_project 5 5810923 5882292 + MGP_C3HHeJ_P0069795 Abcb1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0069796.1 MGP_C3HHeJ_G0028986.1 mouse_genomes_project 5 5867693 5895045 + Abcb1a protein_coding retained_intron MGP_C3HHeJ_T0069797.1 MGP_C3HHeJ_G0028986.1 mouse_genomes_project 5 5867723 5871049 + Abcb1a protein_coding processed_transcript MGP_C3HHeJ_T0069798.1 MGP_C3HHeJ_G0028986.1 mouse_genomes_project 5 5881806 5887121 + Abcb1a protein_coding retained_intron MGP_C3HHeJ_T0008089.1 MGP_C3HHeJ_G0006587.1 mouse_genomes_project 5 75401989 75413791 - Gm42800 lincRNA lincRNA MGP_C3HHeJ_T0099488.1 MGP_C3HHeJ_G0037682.1 mouse_genomes_project 5 134019765 134019869 + Gm23761 snRNA snRNA MGP_C3HHeJ_T0074615.1 MGP_C3HHeJ_G0029882.1 mouse_genomes_project 5 139218816 139227779 - MGP_C3HHeJ_P0074615 Tmem120a protein_coding protein_coding MGP_C3HHeJ_T0074616.1 MGP_C3HHeJ_G0029882.1 mouse_genomes_project 5 139218835 139219922 - Tmem120a protein_coding retained_intron MGP_C3HHeJ_T0074617.1 MGP_C3HHeJ_G0029882.1 mouse_genomes_project 5 139218869 139220568 - Tmem120a protein_coding processed_transcript MGP_C3HHeJ_T0074618.1 MGP_C3HHeJ_G0029882.1 mouse_genomes_project 5 139219586 139225730 - Tmem120a protein_coding retained_intron MGP_C3HHeJ_T0074619.1 MGP_C3HHeJ_G0029882.1 mouse_genomes_project 5 139220539 139227539 - MGP_C3HHeJ_P0074619 Tmem120a protein_coding protein_coding MGP_C3HHeJ_T0073149.1 MGP_C3HHeJ_G0029625.1 mouse_genomes_project 5 116207799 116275422 - MGP_C3HHeJ_P0073149 Svop protein_coding protein_coding MGP_C3HHeJ_T0073150.1 MGP_C3HHeJ_G0029625.1 mouse_genomes_project 5 116209013 116245771 - Svop protein_coding processed_transcript MGP_C3HHeJ_T0073151.1 MGP_C3HHeJ_G0029625.1 mouse_genomes_project 5 116215839 116223798 - Svop protein_coding retained_intron MGP_C3HHeJ_T0073152.1 MGP_C3HHeJ_G0029625.1 mouse_genomes_project 5 116234689 116275232 - Svop protein_coding retained_intron MGP_C3HHeJ_T0073153.1 MGP_C3HHeJ_G0029625.1 mouse_genomes_project 5 116235450 116275219 - MGP_C3HHeJ_P0073153 Svop protein_coding protein_coding MGP_C3HHeJ_T0070781.1 MGP_C3HHeJ_G0029158.1 mouse_genomes_project 5 32554654 32571959 - MGP_C3HHeJ_P0070781 Haus3 protein_coding protein_coding MGP_C3HHeJ_T0070782.1 MGP_C3HHeJ_G0029158.1 mouse_genomes_project 5 32565106 32571880 - Haus3 protein_coding retained_intron MGP_C3HHeJ_T0070783.1 MGP_C3HHeJ_G0029158.1 mouse_genomes_project 5 32565343 32566146 - Haus3 protein_coding processed_transcript MGP_C3HHeJ_T0070784.1 MGP_C3HHeJ_G0029158.1 mouse_genomes_project 5 32570364 32571884 - Haus3 protein_coding processed_transcript MGP_C3HHeJ_T0070785.1 MGP_C3HHeJ_G0029158.1 mouse_genomes_project 5 32570456 32571935 - MGP_C3HHeJ_P0070785 Haus3 protein_coding protein_coding MGP_C3HHeJ_T0070786.1 MGP_C3HHeJ_G0029158.1 mouse_genomes_project 5 32570669 32571865 - MGP_C3HHeJ_P0070786 Haus3 protein_coding protein_coding MGP_C3HHeJ_T0014768.1 MGP_C3HHeJ_G0012872.1 mouse_genomes_project 5 34378389 34378682 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071947.1 MGP_C3HHeJ_G0029354.1 mouse_genomes_project 5 77148886 77160569 - MGP_C3HHeJ_P0071947 Hopx protein_coding protein_coding MGP_C3HHeJ_T0071948.1 MGP_C3HHeJ_G0029354.1 mouse_genomes_project 5 77148886 77160545 - MGP_C3HHeJ_P0071948 Hopx protein_coding protein_coding MGP_C3HHeJ_T0071949.1 MGP_C3HHeJ_G0029354.1 mouse_genomes_project 5 77148886 77181027 - MGP_C3HHeJ_P0071949 Hopx protein_coding protein_coding MGP_C3HHeJ_T0004640.1 MGP_C3HHeJ_G0004010.1 mouse_genomes_project 5 71468688 71491050 - Gm43477 antisense antisense MGP_C3HHeJ_T0072214.1 MGP_C3HHeJ_G0029427.1 mouse_genomes_project 5 91518016 91518965 + MGP_C3HHeJ_P0072214 Pf4 protein_coding protein_coding MGP_C3HHeJ_T0072215.1 MGP_C3HHeJ_G0029427.1 mouse_genomes_project 5 91518094 91518738 + MGP_C3HHeJ_P0072215 Pf4 protein_coding protein_coding MGP_C3HHeJ_T0072216.1 MGP_C3HHeJ_G0029427.1 mouse_genomes_project 5 91518472 91518960 + Pf4 protein_coding retained_intron MGP_C3HHeJ_T0010644.1 MGP_C3HHeJ_G0008777.1 mouse_genomes_project 5 141859782 141859866 - Mir25 miRNA miRNA MGP_C3HHeJ_T0007957.1 MGP_C3HHeJ_G0006493.1 mouse_genomes_project 5 6441499 6443300 - Gm15734 lincRNA lincRNA MGP_C3HHeJ_T0014919.1 MGP_C3HHeJ_G0013023.1 mouse_genomes_project 5 108260917 108261659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001423.1 MGP_C3HHeJ_G0001353.1 mouse_genomes_project 5 12055132 12058035 + TEC TEC MGP_C3HHeJ_T0010590.1 MGP_C3HHeJ_G0008723.1 mouse_genomes_project 5 33454333 33454400 + Mir3097 miRNA miRNA MGP_C3HHeJ_T0010602.1 MGP_C3HHeJ_G0008735.1 mouse_genomes_project 5 69064320 69064426 + Gm24368 miRNA miRNA MGP_C3HHeJ_T0017987.1 MGP_C3HHeJ_G0015380.1 mouse_genomes_project 5 154663715 154680278 + 4930500F04Rik processed_transcript lincRNA MGP_C3HHeJ_T0017988.1 MGP_C3HHeJ_G0015380.1 mouse_genomes_project 5 154663933 154680274 + 4930500F04Rik processed_transcript lincRNA MGP_C3HHeJ_T0017989.1 MGP_C3HHeJ_G0015380.1 mouse_genomes_project 5 154668251 154670358 + 4930500F04Rik processed_transcript retained_intron MGP_C3HHeJ_T0075395.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148402056 148431162 - MGP_C3HHeJ_P0075395 Tecpr1 protein_coding protein_coding MGP_C3HHeJ_T0075396.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148402958 148431094 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075397.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148403734 148405803 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075398.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148403739 148406619 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075399.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148406191 148407394 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075400.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148408095 148411191 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075401.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148415093 148416250 - Tecpr1 protein_coding processed_transcript MGP_C3HHeJ_T0075402.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148416998 148423051 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075403.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148417003 148431099 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075404.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148419716 148431153 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075405.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148425864 148431105 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075406.1 MGP_C3HHeJ_G0030044.1 mouse_genomes_project 5 148427934 148431070 - Tecpr1 protein_coding retained_intron MGP_C3HHeJ_T0075525.1 MGP_C3HHeJ_G0030072.1 mouse_genomes_project 5 150934918 151021839 + MGP_C3HHeJ_P0075525 Wasf3 protein_coding protein_coding MGP_C3HHeJ_T0100731.1 MGP_C3HHeJ_G0038925.1 mouse_genomes_project 5 149004894 149005023 + Gm23995 snoRNA snoRNA MGP_C3HHeJ_T0072709.1 MGP_C3HHeJ_G0029537.1 mouse_genomes_project 5 109186582 109201262 + MGP_C3HHeJ_P0072709 protein_coding protein_coding MGP_C3HHeJ_T0072710.1 MGP_C3HHeJ_G0029537.1 mouse_genomes_project 5 109186949 109202611 + MGP_C3HHeJ_P0072710 protein_coding protein_coding MGP_C3HHeJ_T0072711.1 MGP_C3HHeJ_G0029537.1 mouse_genomes_project 5 109186980 109197145 + MGP_C3HHeJ_P0072711 protein_coding protein_coding MGP_C3HHeJ_T0072712.1 MGP_C3HHeJ_G0029537.1 mouse_genomes_project 5 109186983 109200263 + MGP_C3HHeJ_P0072712 protein_coding protein_coding MGP_C3HHeJ_T0072713.1 MGP_C3HHeJ_G0029537.1 mouse_genomes_project 5 109194047 109197277 + protein_coding processed_transcript MGP_C3HHeJ_T0001480.1 MGP_C3HHeJ_G0001407.1 mouse_genomes_project 5 35638522 35642176 + TEC TEC MGP_C3HHeJ_T0102063.1 MGP_C3HHeJ_G0040028.1 mouse_genomes_project 5 153673381 153673604 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008388.1 MGP_C3HHeJ_G0006794.1 mouse_genomes_project 5 154611471 154621846 - Gm21221 lincRNA lincRNA MGP_C3HHeJ_T0072423.1 MGP_C3HHeJ_G0029477.1 mouse_genomes_project 5 100411238 100449181 - MGP_C3HHeJ_P0072423 protein_coding protein_coding MGP_C3HHeJ_T0072424.1 MGP_C3HHeJ_G0029477.1 mouse_genomes_project 5 100411238 100449181 - MGP_C3HHeJ_P0072424 protein_coding protein_coding MGP_C3HHeJ_T0072425.1 MGP_C3HHeJ_G0029477.1 mouse_genomes_project 5 100412586 100437062 - MGP_C3HHeJ_P0072425 protein_coding protein_coding MGP_C3HHeJ_T0072426.1 MGP_C3HHeJ_G0029477.1 mouse_genomes_project 5 100421606 100427883 - protein_coding retained_intron MGP_C3HHeJ_T0071908.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76934840 76969689 - MGP_C3HHeJ_P0071908 Aasdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071909.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76937116 76937849 - Aasdh protein_coding processed_transcript MGP_C3HHeJ_T0071910.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76937116 76969776 - MGP_C3HHeJ_P0071910 Aasdh protein_coding protein_coding MGP_C3HHeJ_T0071911.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76937121 76969775 - MGP_C3HHeJ_P0071911 Aasdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071912.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76937167 76965162 - MGP_C3HHeJ_P0071912 Aasdh protein_coding protein_coding MGP_C3HHeJ_T0071913.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76937349 76943648 - MGP_C3HHeJ_P0071913 Aasdh protein_coding protein_coding MGP_C3HHeJ_T0071914.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76940911 76969754 - Aasdh protein_coding retained_intron MGP_C3HHeJ_T0071915.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76944104 76969749 - MGP_C3HHeJ_P0071915 Aasdh protein_coding protein_coding MGP_C3HHeJ_T0071916.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76944119 76945909 - Aasdh protein_coding retained_intron MGP_C3HHeJ_T0071917.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76954687 76957142 - Aasdh protein_coding retained_intron MGP_C3HHeJ_T0071918.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76956513 76969754 - Aasdh protein_coding processed_transcript MGP_C3HHeJ_T0071919.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76959219 76969754 - Aasdh protein_coding retained_intron MGP_C3HHeJ_T0071920.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76964980 76969652 - MGP_C3HHeJ_P0071920 Aasdh protein_coding protein_coding MGP_C3HHeJ_T0071921.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76965069 76969765 - MGP_C3HHeJ_P0071921 Aasdh protein_coding protein_coding MGP_C3HHeJ_T0071922.1 MGP_C3HHeJ_G0029348.1 mouse_genomes_project 5 76968589 76969690 - Aasdh protein_coding processed_transcript MGP_C3HHeJ_T0008177.1 MGP_C3HHeJ_G0006655.1 mouse_genomes_project 5 109345695 109376209 - Gm26692 lincRNA lincRNA MGP_C3HHeJ_T0073702.1 MGP_C3HHeJ_G0029732.1 mouse_genomes_project 5 124713330 124718979 + MGP_C3HHeJ_P0073702 Fam109a protein_coding protein_coding MGP_C3HHeJ_T0073703.1 MGP_C3HHeJ_G0029732.1 mouse_genomes_project 5 124713341 124718946 + MGP_C3HHeJ_P0073703 Fam109a protein_coding protein_coding MGP_C3HHeJ_T0073704.1 MGP_C3HHeJ_G0029732.1 mouse_genomes_project 5 124713351 124717231 + MGP_C3HHeJ_P0073704 Fam109a protein_coding protein_coding MGP_C3HHeJ_T0073397.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118204211 118289222 + Cit protein_coding retained_intron MGP_C3HHeJ_T0073398.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118204213 118233660 + MGP_C3HHeJ_P0073398 Cit protein_coding protein_coding MGP_C3HHeJ_T0073399.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118204214 118233678 + MGP_C3HHeJ_P0073399 Cit protein_coding protein_coding MGP_C3HHeJ_T0073400.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118204577 118289229 + Cit protein_coding retained_intron MGP_C3HHeJ_T0073401.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118204577 118373915 + MGP_C3HHeJ_P0073401 Cit protein_coding protein_coding MGP_C3HHeJ_T0073402.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118204577 118371341 + MGP_C3HHeJ_P0073402 Cit protein_coding protein_coding MGP_C3HHeJ_T0073403.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118205304 118371316 + MGP_C3HHeJ_P0073403 Cit protein_coding protein_coding MGP_C3HHeJ_T0073404.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118205304 118371316 + MGP_C3HHeJ_P0073404 Cit protein_coding protein_coding MGP_C3HHeJ_T0073405.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118205394 118214560 + Cit protein_coding processed_transcript MGP_C3HHeJ_T0073406.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118209911 118222873 + Cit protein_coding retained_intron MGP_C3HHeJ_T0073407.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118247515 118248699 + Cit protein_coding retained_intron MGP_C3HHeJ_T0073408.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118270994 118289120 + Cit protein_coding retained_intron MGP_C3HHeJ_T0073409.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118271027 118373916 + MGP_C3HHeJ_P0073409 Cit protein_coding unknown_likely_coding MGP_C3HHeJ_T0073410.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118289160 118371759 + Cit protein_coding processed_transcript MGP_C3HHeJ_T0073411.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118289605 118371356 + Cit protein_coding processed_transcript MGP_C3HHeJ_T0073412.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118297163 118310451 + Cit protein_coding processed_transcript MGP_C3HHeJ_T0073413.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118308815 118362578 + Cit protein_coding retained_intron MGP_C3HHeJ_T0073414.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118314608 118316168 + Cit protein_coding processed_transcript MGP_C3HHeJ_T0073415.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118331499 118371353 + MGP_C3HHeJ_P0073415 Cit protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073416.1 MGP_C3HHeJ_G0029672.1 mouse_genomes_project 5 118350649 118354268 + Cit protein_coding retained_intron MGP_C3HHeJ_T0075721.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155433883 155456694 - MGP_C3HHeJ_P0075721 N4bp2l1 protein_coding protein_coding MGP_C3HHeJ_T0075722.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155433886 155439227 - MGP_C3HHeJ_P0075722 N4bp2l1 protein_coding protein_coding MGP_C3HHeJ_T0075723.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155434904 155456631 - MGP_C3HHeJ_P0075723 N4bp2l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075724.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155436239 155459357 - MGP_C3HHeJ_P0075724 N4bp2l1 protein_coding protein_coding MGP_C3HHeJ_T0075725.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155453920 155456697 - MGP_C3HHeJ_P0075725 N4bp2l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075726.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155453923 155456669 - MGP_C3HHeJ_P0075726 N4bp2l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075727.1 MGP_C3HHeJ_G0030107.1 mouse_genomes_project 5 155454611 155455938 - N4bp2l1 protein_coding retained_intron MGP_C3HHeJ_T0001756.1 MGP_C3HHeJ_G0001680.1 mouse_genomes_project 5 121202089 121203716 + TEC TEC MGP_C3HHeJ_T0014914.1 MGP_C3HHeJ_G0013018.1 mouse_genomes_project 5 107394900 107396578 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001769.1 MGP_C3HHeJ_G0001693.1 mouse_genomes_project 5 124592403 124595704 + TEC TEC MGP_C3HHeJ_T0001463.1 MGP_C3HHeJ_G0001390.1 mouse_genomes_project 5 30727988 30730453 + TEC TEC MGP_C3HHeJ_T0001538.1 MGP_C3HHeJ_G0001464.1 mouse_genomes_project 5 47977120 47980588 + TEC TEC MGP_C3HHeJ_T0099426.1 MGP_C3HHeJ_G0037620.1 mouse_genomes_project 5 23511248 23511419 + Gm22656 snRNA snRNA MGP_C3HHeJ_T0001409.1 MGP_C3HHeJ_G0001339.1 mouse_genomes_project 5 6783911 6786704 - TEC TEC MGP_C3HHeJ_T0069949.1 MGP_C3HHeJ_G0029014.1 mouse_genomes_project 5 19192286 19361207 - MGP_C3HHeJ_P0069949 Fbxl13 protein_coding protein_coding MGP_C3HHeJ_T0069950.1 MGP_C3HHeJ_G0029014.1 mouse_genomes_project 5 19198639 19361189 - Fbxl13 protein_coding retained_intron MGP_C3HHeJ_T0069951.1 MGP_C3HHeJ_G0029014.1 mouse_genomes_project 5 19229212 19361157 - MGP_C3HHeJ_P0069951 Fbxl13 protein_coding protein_coding MGP_C3HHeJ_T0069954.1 MGP_C3HHeJ_G0029014.1 mouse_genomes_project 5 19293513 19297629 - Fbxl13 protein_coding processed_transcript MGP_C3HHeJ_T0069955.1 MGP_C3HHeJ_G0029014.1 mouse_genomes_project 5 19359151 19361236 - Fbxl13 protein_coding retained_intron MGP_C3HHeJ_T0069898.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 16827827 18346195 + MGP_C3HHeJ_P0069898 Magi2 protein_coding protein_coding MGP_C3HHeJ_T0069899.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 16827837 17398797 + Magi2 protein_coding processed_transcript MGP_C3HHeJ_T0069900.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 16827842 18346179 + MGP_C3HHeJ_P0069900 Magi2 protein_coding protein_coding MGP_C3HHeJ_T0069901.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 16827846 18348049 + MGP_C3HHeJ_P0069901 Magi2 protein_coding protein_coding MGP_C3HHeJ_T0069902.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 16828188 16831386 + Magi2 protein_coding retained_intron MGP_C3HHeJ_T0069903.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 17540482 17829416 + MGP_C3HHeJ_P0069903 Magi2 protein_coding protein_coding MGP_C3HHeJ_T0069904.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 17684536 18345402 + MGP_C3HHeJ_P0069904 Magi2 protein_coding protein_coding MGP_C3HHeJ_T0069905.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 17836900 18100870 + Magi2 protein_coding processed_transcript MGP_C3HHeJ_T0069906.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 17861773 18292437 + Magi2 protein_coding retained_intron MGP_C3HHeJ_T0069907.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 18169718 18241140 + Magi2 protein_coding processed_transcript MGP_C3HHeJ_T0069908.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 18242826 18345629 + MGP_C3HHeJ_P0069908 Magi2 protein_coding protein_coding MGP_C3HHeJ_T0069909.1 MGP_C3HHeJ_G0029005.1 mouse_genomes_project 5 18344944 18346079 + Magi2 protein_coding processed_transcript MGP_C3HHeJ_T0073022.1 MGP_C3HHeJ_G0029600.1 mouse_genomes_project 5 114380599 114392261 + MGP_C3HHeJ_P0073022 Tfip11 protein_coding protein_coding MGP_C3HHeJ_T0073023.1 MGP_C3HHeJ_G0029600.1 mouse_genomes_project 5 114380662 114386147 + MGP_C3HHeJ_P0073023 Tfip11 protein_coding protein_coding MGP_C3HHeJ_T0073024.1 MGP_C3HHeJ_G0029600.1 mouse_genomes_project 5 114380733 114382425 + MGP_C3HHeJ_P0073024 Tfip11 protein_coding protein_coding MGP_C3HHeJ_T0073025.1 MGP_C3HHeJ_G0029600.1 mouse_genomes_project 5 114389830 114391461 + Tfip11 protein_coding retained_intron MGP_C3HHeJ_T0008058.1 MGP_C3HHeJ_G0006564.1 mouse_genomes_project 5 59291923 59312868 - 4933402J10Rik lincRNA lincRNA MGP_C3HHeJ_T0008059.1 MGP_C3HHeJ_G0006564.1 mouse_genomes_project 5 59291928 59312862 - 4933402J10Rik lincRNA lincRNA MGP_C3HHeJ_T0001518.1 MGP_C3HHeJ_G0001445.1 mouse_genomes_project 5 46944071 46946669 + TEC TEC MGP_C3HHeJ_T0074220.1 MGP_C3HHeJ_G0029814.1 mouse_genomes_project 5 131860150 131900334 + MGP_C3HHeJ_P0074220 Piwil1 protein_coding protein_coding MGP_C3HHeJ_T0074221.1 MGP_C3HHeJ_G0029814.1 mouse_genomes_project 5 131888195 131908435 + MGP_C3HHeJ_P0074221 Piwil1 protein_coding protein_coding MGP_C3HHeJ_T0074222.1 MGP_C3HHeJ_G0029814.1 mouse_genomes_project 5 131889511 131907582 + MGP_C3HHeJ_P0074222 Piwil1 protein_coding protein_coding MGP_C3HHeJ_T0075249.1 MGP_C3HHeJ_G0030011.1 mouse_genomes_project 5 146712346 146763886 - MGP_C3HHeJ_P0075249 Mmd2 protein_coding protein_coding MGP_C3HHeJ_T0075250.1 MGP_C3HHeJ_G0030011.1 mouse_genomes_project 5 146733376 146735252 - Mmd2 protein_coding retained_intron MGP_C3HHeJ_T0075251.1 MGP_C3HHeJ_G0030011.1 mouse_genomes_project 5 146734678 146763886 - Mmd2 protein_coding processed_transcript MGP_C3HHeJ_T0072860.1 MGP_C3HHeJ_G0029567.1 mouse_genomes_project 5 110919450 110926916 - MGP_C3HHeJ_P0072860 protein_coding protein_coding MGP_C3HHeJ_T0007953.1 MGP_C3HHeJ_G0006489.1 mouse_genomes_project 5 1772688 1787419 - Gm42744 lincRNA lincRNA MGP_C3HHeJ_T0001497.1 MGP_C3HHeJ_G0001424.1 mouse_genomes_project 5 42824775 42828233 - TEC TEC MGP_C3HHeJ_T0069602.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 407883 434309 + MGP_C3HHeJ_P0069602 Fam133b protein_coding protein_coding MGP_C3HHeJ_T0069603.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 407886 425096 + Fam133b protein_coding retained_intron MGP_C3HHeJ_T0069604.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 407888 433811 + MGP_C3HHeJ_P0069604 Fam133b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069605.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 407888 433811 + MGP_C3HHeJ_P0069605 Fam133b protein_coding protein_coding MGP_C3HHeJ_T0069606.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 407894 433884 + Fam133b protein_coding retained_intron MGP_C3HHeJ_T0069607.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 423711 428767 + Fam133b protein_coding retained_intron MGP_C3HHeJ_T0069608.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 429082 429774 + Fam133b protein_coding retained_intron MGP_C3HHeJ_T0069609.1 MGP_C3HHeJ_G0028958.1 mouse_genomes_project 5 430885 433102 + Fam133b protein_coding retained_intron MGP_C3HHeJ_T0008218.1 MGP_C3HHeJ_G0006676.1 mouse_genomes_project 5 114642229 114642963 + Gm27004 lincRNA lincRNA MGP_C3HHeJ_T0073564.1 MGP_C3HHeJ_G0029705.1 mouse_genomes_project 5 123245396 123251296 - MGP_C3HHeJ_P0073564 Cfap73 protein_coding protein_coding MGP_C3HHeJ_T0069779.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5521531 5547220 - MGP_C3HHeJ_P0069779 Dbf4 protein_coding protein_coding MGP_C3HHeJ_T0069780.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5521775 5547052 - MGP_C3HHeJ_P0069780 Dbf4 protein_coding protein_coding MGP_C3HHeJ_T0069781.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5522410 5524864 - Dbf4 protein_coding retained_intron MGP_C3HHeJ_T0069783.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5526217 5547221 - Dbf4 protein_coding retained_intron MGP_C3HHeJ_T0069784.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5527699 5529797 - Dbf4 protein_coding retained_intron MGP_C3HHeJ_T0069785.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5542983 5547234 - Dbf4 protein_coding processed_transcript MGP_C3HHeJ_T0069786.1 MGP_C3HHeJ_G0028983.1 mouse_genomes_project 5 5546723 5547209 - Dbf4 protein_coding retained_intron MGP_C3HHeJ_T0014886.1 MGP_C3HHeJ_G0012990.1 mouse_genomes_project 5 92520559 92521439 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071535.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65574120 65584592 - 9130230L23Rik protein_coding retained_intron MGP_C3HHeJ_T0071536.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65582640 65601218 - MGP_C3HHeJ_P0071536 9130230L23Rik protein_coding protein_coding MGP_C3HHeJ_T0071537.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65582987 65594992 - MGP_C3HHeJ_P0071537 9130230L23Rik protein_coding protein_coding MGP_C3HHeJ_T0071538.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65583675 65585697 - 9130230L23Rik protein_coding retained_intron MGP_C3HHeJ_T0071539.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65584710 65596107 - 9130230L23Rik protein_coding retained_intron MGP_C3HHeJ_T0071540.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65594451 65601218 - 9130230L23Rik protein_coding retained_intron MGP_C3HHeJ_T0071541.1 MGP_C3HHeJ_G0029286.1 mouse_genomes_project 5 65595836 65596560 - 9130230L23Rik protein_coding retained_intron MGP_C3HHeJ_T0070618.1 MGP_C3HHeJ_G0029131.1 mouse_genomes_project 5 30384028 30408424 + MGP_C3HHeJ_P0070618 Fosl2 protein_coding protein_coding MGP_C3HHeJ_T0070619.1 MGP_C3HHeJ_G0029131.1 mouse_genomes_project 5 30384400 30390232 + Fosl2 protein_coding retained_intron MGP_C3HHeJ_T0070620.1 MGP_C3HHeJ_G0029131.1 mouse_genomes_project 5 30397104 30404295 + Fosl2 protein_coding retained_intron MGP_C3HHeJ_T0073119.1 MGP_C3HHeJ_G0029620.1 mouse_genomes_project 5 115952242 115959035 - MGP_C3HHeJ_P0073119 Tmem119 protein_coding protein_coding MGP_C3HHeJ_T0073120.1 MGP_C3HHeJ_G0029620.1 mouse_genomes_project 5 115954151 115958965 - MGP_C3HHeJ_P0073120 Tmem119 protein_coding protein_coding MGP_C3HHeJ_T0074527.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482070 138493778 - MGP_C3HHeJ_P0074527 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074528.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482070 138486041 - MGP_C3HHeJ_P0074528 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074529.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482072 138494071 - MGP_C3HHeJ_P0074529 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074530.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482072 138493190 - MGP_C3HHeJ_P0074530 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074531.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482398 138493151 - MGP_C3HHeJ_P0074531 Wbscr22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074532.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482400 138485841 - Wbscr22 protein_coding retained_intron MGP_C3HHeJ_T0074533.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482446 138486133 - Wbscr22 protein_coding retained_intron MGP_C3HHeJ_T0074534.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138482726 138486027 - Wbscr22 protein_coding retained_intron MGP_C3HHeJ_T0074535.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138485162 138490583 - Wbscr22 protein_coding processed_transcript MGP_C3HHeJ_T0074536.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138485593 138493160 - Wbscr22 protein_coding retained_intron MGP_C3HHeJ_T0074537.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138485999 138490455 - Wbscr22 protein_coding retained_intron MGP_C3HHeJ_T0074538.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138488308 138492876 - MGP_C3HHeJ_P0074538 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074539.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138490374 138493202 - MGP_C3HHeJ_P0074539 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074540.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138492848 138493191 - Wbscr22 protein_coding processed_transcript MGP_C3HHeJ_T0074541.1 MGP_C3HHeJ_G0029865.1 mouse_genomes_project 5 138493268 138493761 - MGP_C3HHeJ_P0074541 Wbscr22 protein_coding protein_coding MGP_C3HHeJ_T0074865.1 MGP_C3HHeJ_G0029927.1 mouse_genomes_project 5 141239454 141243382 - MGP_C3HHeJ_P0074865 Mospd3 protein_coding protein_coding MGP_C3HHeJ_T0074866.1 MGP_C3HHeJ_G0029927.1 mouse_genomes_project 5 141239454 141243718 - MGP_C3HHeJ_P0074866 Mospd3 protein_coding protein_coding MGP_C3HHeJ_T0074867.1 MGP_C3HHeJ_G0029927.1 mouse_genomes_project 5 141239964 141243474 - Mospd3 protein_coding processed_transcript MGP_C3HHeJ_T0074868.1 MGP_C3HHeJ_G0029927.1 mouse_genomes_project 5 141240016 141243732 - MGP_C3HHeJ_P0074868 Mospd3 protein_coding protein_coding MGP_C3HHeJ_T0074869.1 MGP_C3HHeJ_G0029927.1 mouse_genomes_project 5 141242707 141243398 - MGP_C3HHeJ_P0074869 Mospd3 protein_coding protein_coding MGP_C3HHeJ_T0074870.1 MGP_C3HHeJ_G0029927.1 mouse_genomes_project 5 141242756 141243365 - Mospd3 protein_coding retained_intron MGP_C3HHeJ_T0073872.1 MGP_C3HHeJ_G0029754.1 mouse_genomes_project 5 125974593 125993349 + MGP_C3HHeJ_P0073872 Orai1 protein_coding protein_coding MGP_C3HHeJ_T0073873.1 MGP_C3HHeJ_G0029754.1 mouse_genomes_project 5 125974593 125993649 + MGP_C3HHeJ_P0073873 Orai1 protein_coding protein_coding MGP_C3HHeJ_T0073874.1 MGP_C3HHeJ_G0029754.1 mouse_genomes_project 5 125974857 125992683 + Orai1 protein_coding processed_transcript MGP_C3HHeJ_T0075534.1 MGP_C3HHeJ_G0030075.1 mouse_genomes_project 5 151413912 151419187 + MGP_C3HHeJ_P0075534 Rpl21 protein_coding protein_coding MGP_C3HHeJ_T0075535.1 MGP_C3HHeJ_G0030075.1 mouse_genomes_project 5 151414168 151415628 + Rpl21 protein_coding retained_intron MGP_C3HHeJ_T0075536.1 MGP_C3HHeJ_G0030075.1 mouse_genomes_project 5 151414217 151418126 + MGP_C3HHeJ_P0075536 Rpl21 protein_coding protein_coding MGP_C3HHeJ_T0075537.1 MGP_C3HHeJ_G0030075.1 mouse_genomes_project 5 151414224 151418127 + MGP_C3HHeJ_P0075537 Rpl21 protein_coding protein_coding MGP_C3HHeJ_T0075538.1 MGP_C3HHeJ_G0030075.1 mouse_genomes_project 5 151415214 151415987 + Rpl21 protein_coding retained_intron MGP_C3HHeJ_T0075539.1 MGP_C3HHeJ_G0030075.1 mouse_genomes_project 5 151416228 151418127 + Rpl21 protein_coding retained_intron MGP_C3HHeJ_T0014697.1 MGP_C3HHeJ_G0012801.1 mouse_genomes_project 5 16801873 16802114 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072778.1 MGP_C3HHeJ_G0029548.1 mouse_genomes_project 5 109836082 109867776 - MGP_C3HHeJ_P0072778 Tmed5 protein_coding protein_coding MGP_C3HHeJ_T0072779.1 MGP_C3HHeJ_G0029548.1 mouse_genomes_project 5 109847406 109867794 - MGP_C3HHeJ_P0072779 Tmed5 protein_coding protein_coding MGP_C3HHeJ_T0072780.1 MGP_C3HHeJ_G0029548.1 mouse_genomes_project 5 109854860 109867831 - MGP_C3HHeJ_P0072780 Tmed5 protein_coding protein_coding MGP_C3HHeJ_T0072781.1 MGP_C3HHeJ_G0029548.1 mouse_genomes_project 5 109856288 109867760 - MGP_C3HHeJ_P0072781 Tmed5 protein_coding protein_coding MGP_C3HHeJ_T0072782.1 MGP_C3HHeJ_G0029548.1 mouse_genomes_project 5 109864676 109867744 - MGP_C3HHeJ_P0072782 Tmed5 protein_coding protein_coding MGP_C3HHeJ_T0072783.1 MGP_C3HHeJ_G0029548.1 mouse_genomes_project 5 109864931 109867741 - MGP_C3HHeJ_P0072783 Tmed5 protein_coding protein_coding MGP_C3HHeJ_T0017896.1 MGP_C3HHeJ_G0015350.1 mouse_genomes_project 5 2156080 2158735 - Gm43623 processed_transcript processed_transcript MGP_C3HHeJ_T0001625.1 MGP_C3HHeJ_G0001550.1 mouse_genomes_project 5 66553408 66556111 + TEC TEC MGP_C3HHeJ_T0073127.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116003847 116072233 - MGP_C3HHeJ_P0073127 Coro1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073128.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116003847 116072286 - MGP_C3HHeJ_P0073128 Coro1c protein_coding protein_coding MGP_C3HHeJ_T0073129.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116006660 116012264 - Coro1c protein_coding retained_intron MGP_C3HHeJ_T0073130.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116006671 116011267 - Coro1c protein_coding retained_intron MGP_C3HHeJ_T0073131.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116007606 116009042 - Coro1c protein_coding retained_intron MGP_C3HHeJ_T0073132.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116009533 116011072 - Coro1c protein_coding retained_intron MGP_C3HHeJ_T0073133.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116009961 116036051 - Coro1c protein_coding processed_transcript MGP_C3HHeJ_T0073134.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116010020 116020185 - Coro1c protein_coding processed_transcript MGP_C3HHeJ_T0073135.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116027123 116044338 - MGP_C3HHeJ_P0073135 Coro1c protein_coding protein_coding MGP_C3HHeJ_T0073136.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116027181 116043824 - MGP_C3HHeJ_P0073136 Coro1c protein_coding protein_coding MGP_C3HHeJ_T0073137.1 MGP_C3HHeJ_G0029622.1 mouse_genomes_project 5 116038463 116072173 - Coro1c protein_coding retained_intron MGP_C3HHeJ_T0069940.1 MGP_C3HHeJ_G0029011.1 mouse_genomes_project 5 18995315 19130080 - MGP_C3HHeJ_P0069940 protein_coding protein_coding MGP_C3HHeJ_T0069941.1 MGP_C3HHeJ_G0029011.1 mouse_genomes_project 5 19020811 19130080 - MGP_C3HHeJ_P0069941 protein_coding protein_coding MGP_C3HHeJ_T0069942.1 MGP_C3HHeJ_G0029011.1 mouse_genomes_project 5 19021094 19035358 - protein_coding retained_intron MGP_C3HHeJ_T0069943.1 MGP_C3HHeJ_G0029011.1 mouse_genomes_project 5 19021929 19026519 - protein_coding retained_intron MGP_C3HHeJ_T0069944.1 MGP_C3HHeJ_G0029011.1 mouse_genomes_project 5 19026572 19035572 - protein_coding processed_transcript MGP_C3HHeJ_T0017921.1 MGP_C3HHeJ_G0015359.1 mouse_genomes_project 5 52019078 52041072 - 5033403H07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017922.1 MGP_C3HHeJ_G0015359.1 mouse_genomes_project 5 52019090 52038938 - 5033403H07Rik processed_transcript lincRNA MGP_C3HHeJ_T0017923.1 MGP_C3HHeJ_G0015359.1 mouse_genomes_project 5 52037074 52038989 - 5033403H07Rik processed_transcript retained_intron MGP_C3HHeJ_T0074846.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186463 141197466 + MGP_C3HHeJ_P0074846 Actl6b protein_coding protein_coding MGP_C3HHeJ_T0074847.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186484 141187293 + Actl6b protein_coding retained_intron MGP_C3HHeJ_T0074848.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186484 141200906 + MGP_C3HHeJ_P0074848 Actl6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074849.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186485 141200040 + MGP_C3HHeJ_P0074849 Actl6b protein_coding protein_coding MGP_C3HHeJ_T0074850.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186501 141187979 + MGP_C3HHeJ_P0074850 Actl6b protein_coding protein_coding MGP_C3HHeJ_T0074851.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186503 141189603 + Actl6b protein_coding retained_intron MGP_C3HHeJ_T0074852.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186503 141203819 + MGP_C3HHeJ_P0074852 Actl6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074853.1 MGP_C3HHeJ_G0029925.1 mouse_genomes_project 5 141186581 141203648 + MGP_C3HHeJ_P0074853 Actl6b protein_coding protein_coding MGP_C3HHeJ_T0001674.1 MGP_C3HHeJ_G0001598.1 mouse_genomes_project 5 87825335 87826995 + TEC TEC MGP_C3HHeJ_T0010613.1 MGP_C3HHeJ_G0008746.1 mouse_genomes_project 5 101774124 101774200 - Gm23222 miRNA miRNA MGP_C3HHeJ_T0073037.1 MGP_C3HHeJ_G0029603.1 mouse_genomes_project 5 114407968 114410201 - MGP_C3HHeJ_P0073037 Gm6583 protein_coding protein_coding MGP_C3HHeJ_T0001768.1 MGP_C3HHeJ_G0001692.1 mouse_genomes_project 5 124562494 124565582 + TEC TEC MGP_C3HHeJ_T0070704.1 MGP_C3HHeJ_G0029147.1 mouse_genomes_project 5 32007235 32009403 + MGP_C3HHeJ_P0070704 Gm9903 protein_coding protein_coding MGP_C3HHeJ_T0098511.1 MGP_C3HHeJ_G0036715.1 mouse_genomes_project 5 147236780 147237362 - Gm43378 sense_intronic sense_intronic MGP_C3HHeJ_T0073899.1 MGP_C3HHeJ_G0029760.1 mouse_genomes_project 5 126147581 126160498 - MGP_C3HHeJ_P0073899 Hpd protein_coding protein_coding MGP_C3HHeJ_T0073900.1 MGP_C3HHeJ_G0029760.1 mouse_genomes_project 5 126147646 126148697 - Hpd protein_coding processed_transcript MGP_C3HHeJ_T0073901.1 MGP_C3HHeJ_G0029760.1 mouse_genomes_project 5 126147875 126151699 - MGP_C3HHeJ_P0073901 Hpd protein_coding protein_coding MGP_C3HHeJ_T0073902.1 MGP_C3HHeJ_G0029760.1 mouse_genomes_project 5 126153312 126160493 - Hpd protein_coding retained_intron MGP_C3HHeJ_T0073903.1 MGP_C3HHeJ_G0029760.1 mouse_genomes_project 5 126153312 126160494 - MGP_C3HHeJ_P0073903 Hpd protein_coding protein_coding MGP_C3HHeJ_T0073904.1 MGP_C3HHeJ_G0029760.1 mouse_genomes_project 5 126158429 126159838 - Hpd protein_coding processed_transcript MGP_C3HHeJ_T0014737.1 MGP_C3HHeJ_G0012841.1 mouse_genomes_project 5 24639918 24640030 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071612.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66952518 67004740 + MGP_C3HHeJ_P0071612 Slc30a9 protein_coding protein_coding MGP_C3HHeJ_T0071613.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66952518 67004737 + MGP_C3HHeJ_P0071613 Slc30a9 protein_coding protein_coding MGP_C3HHeJ_T0071614.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66952527 66955322 + Slc30a9 protein_coding retained_intron MGP_C3HHeJ_T0071615.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66952528 67002083 + MGP_C3HHeJ_P0071615 Slc30a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071616.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66952747 66964484 + Slc30a9 protein_coding processed_transcript MGP_C3HHeJ_T0071617.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66961266 66987873 + MGP_C3HHeJ_P0071617 Slc30a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071618.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66961292 66974330 + MGP_C3HHeJ_P0071618 Slc30a9 protein_coding protein_coding MGP_C3HHeJ_T0071619.1 MGP_C3HHeJ_G0029294.1 mouse_genomes_project 5 66978246 66999653 + Slc30a9 protein_coding retained_intron MGP_C3HHeJ_T0001801.1 MGP_C3HHeJ_G0001724.1 mouse_genomes_project 5 131748610 131749982 - TEC TEC MGP_C3HHeJ_T0073516.1 MGP_C3HHeJ_G0029694.1 mouse_genomes_project 5 122412007 122421026 + MGP_C3HHeJ_P0073516 Tbx5 protein_coding protein_coding MGP_C3HHeJ_T0073517.1 MGP_C3HHeJ_G0029694.1 mouse_genomes_project 5 122413995 122468835 + MGP_C3HHeJ_P0073517 Tbx5 protein_coding protein_coding MGP_C3HHeJ_T0073518.1 MGP_C3HHeJ_G0029694.1 mouse_genomes_project 5 122416298 122426581 + MGP_C3HHeJ_P0073518 Tbx5 protein_coding protein_coding MGP_C3HHeJ_T0001588.1 MGP_C3HHeJ_G0001514.1 mouse_genomes_project 5 63107896 63112621 - TEC TEC MGP_C3HHeJ_T0001589.1 MGP_C3HHeJ_G0001514.1 mouse_genomes_project 5 63111676 63111991 - TEC TEC MGP_C3HHeJ_T0069787.1 MGP_C3HHeJ_G0028984.1 mouse_genomes_project 5 5547397 5585061 + protein_coding retained_intron MGP_C3HHeJ_T0069788.1 MGP_C3HHeJ_G0028984.1 mouse_genomes_project 5 5579411 5613337 + MGP_C3HHeJ_P0069788 protein_coding unknown_likely_coding MGP_C3HHeJ_T0069789.1 MGP_C3HHeJ_G0028984.1 mouse_genomes_project 5 5581258 5601437 + MGP_C3HHeJ_P0069789 protein_coding protein_coding MGP_C3HHeJ_T0069790.1 MGP_C3HHeJ_G0028984.1 mouse_genomes_project 5 5589053 5589475 + protein_coding retained_intron MGP_C3HHeJ_T0069791.1 MGP_C3HHeJ_G0028984.1 mouse_genomes_project 5 5602767 5608918 + protein_coding retained_intron MGP_C3HHeJ_T0073230.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116960431 117011070 - MGP_C3HHeJ_P0073230 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073231.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116960432 117011067 - MGP_C3HHeJ_P0073231 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073232.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116960435 117011067 - MGP_C3HHeJ_P0073232 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073233.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116960435 116979663 - MGP_C3HHeJ_P0073233 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073234.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116960435 117011009 - MGP_C3HHeJ_P0073234 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073235.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116964292 117011037 - MGP_C3HHeJ_P0073235 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073236.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116964587 117011070 - MGP_C3HHeJ_P0073236 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073237.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116967945 116968896 - Git2 protein_coding processed_transcript MGP_C3HHeJ_T0073238.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116968593 116984845 - MGP_C3HHeJ_P0073238 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073239.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116972897 116977157 - Git2 protein_coding retained_intron MGP_C3HHeJ_T0073240.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116983895 117011070 - Git2 protein_coding retained_intron MGP_C3HHeJ_T0073241.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116984782 117004108 - MGP_C3HHeJ_P0073241 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073242.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 116991842 116999280 - Git2 protein_coding retained_intron MGP_C3HHeJ_T0073243.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 117001933 117013142 - MGP_C3HHeJ_P0073243 Git2 protein_coding protein_coding MGP_C3HHeJ_T0073244.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 117002037 117011070 - Git2 protein_coding processed_transcript MGP_C3HHeJ_T0073245.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 117002124 117004738 - Git2 protein_coding processed_transcript MGP_C3HHeJ_T0073246.1 MGP_C3HHeJ_G0029640.1 mouse_genomes_project 5 117003259 117011042 - Git2 protein_coding retained_intron MGP_C3HHeJ_T0014911.1 MGP_C3HHeJ_G0013015.1 mouse_genomes_project 5 105364600 105364822 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008381.1 MGP_C3HHeJ_G0006792.1 mouse_genomes_project 5 154143017 154171536 + BC028471 lincRNA lincRNA MGP_C3HHeJ_T0008382.1 MGP_C3HHeJ_G0006792.1 mouse_genomes_project 5 154144427 154152864 + BC028471 lincRNA lincRNA MGP_C3HHeJ_T0008383.1 MGP_C3HHeJ_G0006792.1 mouse_genomes_project 5 154144429 154163044 + BC028471 lincRNA lincRNA MGP_C3HHeJ_T0008384.1 MGP_C3HHeJ_G0006792.1 mouse_genomes_project 5 154144644 154170426 + BC028471 lincRNA lincRNA MGP_C3HHeJ_T0008385.1 MGP_C3HHeJ_G0006792.1 mouse_genomes_project 5 154152829 154171536 + BC028471 lincRNA lincRNA MGP_C3HHeJ_T0008386.1 MGP_C3HHeJ_G0006792.1 mouse_genomes_project 5 154152841 154153663 + BC028471 lincRNA lincRNA MGP_C3HHeJ_T0071804.1 MGP_C3HHeJ_G0029331.1 mouse_genomes_project 5 74169678 74173735 + MGP_C3HHeJ_P0071804 protein_coding protein_coding MGP_C3HHeJ_T0071805.1 MGP_C3HHeJ_G0029331.1 mouse_genomes_project 5 74172146 74173726 + protein_coding retained_intron MGP_C3HHeJ_T0014812.1 MGP_C3HHeJ_G0012916.1 mouse_genomes_project 5 59094367 59094779 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073429.1 MGP_C3HHeJ_G0029676.1 mouse_genomes_project 5 118795814 118810396 - MGP_C3HHeJ_P0073429 Hspb8 protein_coding protein_coding MGP_C3HHeJ_T0073430.1 MGP_C3HHeJ_G0029676.1 mouse_genomes_project 5 118796263 118803580 - Hspb8 protein_coding processed_transcript MGP_C3HHeJ_T0071872.1 MGP_C3HHeJ_G0029342.1 mouse_genomes_project 5 76240311 76333710 - MGP_C3HHeJ_P0071872 Clock protein_coding protein_coding MGP_C3HHeJ_T0071873.1 MGP_C3HHeJ_G0029342.1 mouse_genomes_project 5 76242589 76333466 - MGP_C3HHeJ_P0071873 Clock protein_coding protein_coding MGP_C3HHeJ_T0071874.1 MGP_C3HHeJ_G0029342.1 mouse_genomes_project 5 76244265 76303969 - MGP_C3HHeJ_P0071874 Clock protein_coding protein_coding MGP_C3HHeJ_T0071875.1 MGP_C3HHeJ_G0029342.1 mouse_genomes_project 5 76259266 76333672 - Clock protein_coding retained_intron MGP_C3HHeJ_T0071876.1 MGP_C3HHeJ_G0029342.1 mouse_genomes_project 5 76281806 76333690 - Clock protein_coding processed_transcript MGP_C3HHeJ_T0071877.1 MGP_C3HHeJ_G0029342.1 mouse_genomes_project 5 76301910 76333690 - Clock protein_coding retained_intron MGP_C3HHeJ_T0010591.1 MGP_C3HHeJ_G0008724.1 mouse_genomes_project 5 34777676 34777735 + Mir7689 miRNA miRNA MGP_C3HHeJ_T0001718.1 MGP_C3HHeJ_G0001642.1 mouse_genomes_project 5 110340906 110344179 - TEC TEC MGP_C3HHeJ_T0004813.1 MGP_C3HHeJ_G0004131.1 mouse_genomes_project 5 148455378 148460084 - 2900089D17Rik antisense antisense MGP_C3HHeJ_T0004814.1 MGP_C3HHeJ_G0004131.1 mouse_genomes_project 5 148455465 148469828 - 2900089D17Rik antisense antisense MGP_C3HHeJ_T0008357.1 MGP_C3HHeJ_G0006772.1 mouse_genomes_project 5 151375559 151386784 + Gm43741 lincRNA lincRNA MGP_C3HHeJ_T0071923.1 MGP_C3HHeJ_G0029349.1 mouse_genomes_project 5 76981097 77010432 - MGP_C3HHeJ_P0071923 Ppat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071924.1 MGP_C3HHeJ_G0029349.1 mouse_genomes_project 5 76981124 77010438 - MGP_C3HHeJ_P0071924 Ppat protein_coding protein_coding MGP_C3HHeJ_T0071925.1 MGP_C3HHeJ_G0029349.1 mouse_genomes_project 5 76982899 77010025 - Ppat protein_coding retained_intron MGP_C3HHeJ_T0073256.1 MGP_C3HHeJ_G0029645.1 mouse_genomes_project 5 117130034 117132959 - MGP_C3HHeJ_P0073256 Gm9936 protein_coding protein_coding MGP_C3HHeJ_T0072714.1 MGP_C3HHeJ_G0029538.1 mouse_genomes_project 5 109198998 109241655 + MGP_C3HHeJ_P0072714 protein_coding protein_coding MGP_C3HHeJ_T0008122.1 MGP_C3HHeJ_G0006615.1 mouse_genomes_project 5 97980180 97985775 + lincRNA lincRNA MGP_C3HHeJ_T0001865.1 MGP_C3HHeJ_G0001787.1 mouse_genomes_project 5 149563340 149565467 + TEC TEC MGP_C3HHeJ_T0001745.1 MGP_C3HHeJ_G0001669.1 mouse_genomes_project 5 118847773 118849148 - TEC TEC MGP_C3HHeJ_T0008208.1 MGP_C3HHeJ_G0006672.1 mouse_genomes_project 5 114199655 114208397 + Gm42491 lincRNA lincRNA MGP_C3HHeJ_T0004691.1 MGP_C3HHeJ_G0004043.1 mouse_genomes_project 5 107413557 107417748 - Lrrc8dos antisense antisense MGP_C3HHeJ_T0071071.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36643527 36666290 - MGP_C3HHeJ_P0071071 Nsg1 protein_coding protein_coding MGP_C3HHeJ_T0071072.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36644470 36645165 - MGP_C3HHeJ_P0071072 Nsg1 protein_coding protein_coding MGP_C3HHeJ_T0071073.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36644591 36665414 - MGP_C3HHeJ_P0071073 Nsg1 protein_coding protein_coding MGP_C3HHeJ_T0071074.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36644878 36665788 - MGP_C3HHeJ_P0071074 Nsg1 protein_coding protein_coding MGP_C3HHeJ_T0071075.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36651049 36665745 - MGP_C3HHeJ_P0071075 Nsg1 protein_coding protein_coding MGP_C3HHeJ_T0071076.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36661716 36665856 - Nsg1 protein_coding retained_intron MGP_C3HHeJ_T0071077.1 MGP_C3HHeJ_G0029206.1 mouse_genomes_project 5 36665288 36665788 - MGP_C3HHeJ_P0071077 Nsg1 protein_coding protein_coding MGP_C3HHeJ_T0099485.1 MGP_C3HHeJ_G0037679.1 mouse_genomes_project 5 127717008 127717106 - Gm24854 snRNA snRNA MGP_C3HHeJ_T0070459.1 MGP_C3HHeJ_G0029111.1 mouse_genomes_project 5 29335216 29349696 - Gm29609 protein_coding processed_transcript MGP_C3HHeJ_T0070462.1 MGP_C3HHeJ_G0029111.1 mouse_genomes_project 5 29342683 29372509 - MGP_C3HHeJ_P0070462 Gm29609 protein_coding protein_coding MGP_C3HHeJ_T0004648.1 MGP_C3HHeJ_G0004017.1 mouse_genomes_project 5 76996225 76996703 + antisense antisense MGP_C3HHeJ_T0004649.1 MGP_C3HHeJ_G0004017.1 mouse_genomes_project 5 76996465 77006616 + antisense antisense MGP_C3HHeJ_T0008153.1 MGP_C3HHeJ_G0006638.1 mouse_genomes_project 5 103401931 103404302 + Gm29707 lincRNA lincRNA MGP_C3HHeJ_T0008154.1 MGP_C3HHeJ_G0006638.1 mouse_genomes_project 5 103403369 103403860 + Gm29707 lincRNA lincRNA MGP_C3HHeJ_T0014955.1 MGP_C3HHeJ_G0013059.1 mouse_genomes_project 5 117567879 117568181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071880.1 MGP_C3HHeJ_G0029344.1 mouse_genomes_project 5 76366606 76398019 - MGP_C3HHeJ_P0071880 Nmu protein_coding protein_coding MGP_C3HHeJ_T0014758.1 MGP_C3HHeJ_G0012862.1 mouse_genomes_project 5 31426121 31427238 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014765.1 MGP_C3HHeJ_G0012869.1 mouse_genomes_project 5 32711063 32711522 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004603.1 MGP_C3HHeJ_G0003982.1 mouse_genomes_project 5 41739299 41827956 - Gm7854 antisense antisense MGP_C3HHeJ_T0004604.1 MGP_C3HHeJ_G0003982.1 mouse_genomes_project 5 41739299 41827588 - Gm7854 antisense antisense MGP_C3HHeJ_T0004605.1 MGP_C3HHeJ_G0003982.1 mouse_genomes_project 5 41827602 41827953 - Gm7854 antisense antisense MGP_C3HHeJ_T0001469.1 MGP_C3HHeJ_G0001396.1 mouse_genomes_project 5 32033108 32034263 + TEC TEC MGP_C3HHeJ_T0008281.1 MGP_C3HHeJ_G0006720.1 mouse_genomes_project 5 127141287 127142443 - Gm16001 lincRNA lincRNA MGP_C3HHeJ_T0008282.1 MGP_C3HHeJ_G0006720.1 mouse_genomes_project 5 127141316 127142396 - Gm16001 lincRNA lincRNA MGP_C3HHeJ_T0014965.1 MGP_C3HHeJ_G0013069.1 mouse_genomes_project 5 125160752 125161291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098489.1 MGP_C3HHeJ_G0036694.1 mouse_genomes_project 5 28508896 28509341 + Gm43755 sense_intronic sense_intronic MGP_C3HHeJ_T0014801.1 MGP_C3HHeJ_G0012905.1 mouse_genomes_project 5 54801952 54803409 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001869.1 MGP_C3HHeJ_G0001791.1 mouse_genomes_project 5 154177448 154179086 + TEC TEC MGP_C3HHeJ_T0098512.1 MGP_C3HHeJ_G0036716.1 mouse_genomes_project 5 148490451 148496093 + Gm15708 sense_intronic sense_intronic MGP_C3HHeJ_T0098513.1 MGP_C3HHeJ_G0036716.1 mouse_genomes_project 5 148493526 148496059 + Gm15708 sense_intronic sense_intronic MGP_C3HHeJ_T0072614.1 MGP_C3HHeJ_G0029518.1 mouse_genomes_project 5 106505336 106532943 - Gbp8 protein_coding retained_intron MGP_C3HHeJ_T0072615.1 MGP_C3HHeJ_G0029518.1 mouse_genomes_project 5 106505336 106514962 - Gbp8 protein_coding processed_transcript MGP_C3HHeJ_T0072616.1 MGP_C3HHeJ_G0029518.1 mouse_genomes_project 5 106505339 106630063 - MGP_C3HHeJ_P0072616 Gbp8 protein_coding protein_coding MGP_C3HHeJ_T0072617.1 MGP_C3HHeJ_G0029518.1 mouse_genomes_project 5 106506076 106530503 - MGP_C3HHeJ_P0072617 Gbp8 protein_coding protein_coding MGP_C3HHeJ_T0015037.1 MGP_C3HHeJ_G0013141.1 mouse_genomes_project 5 155302985 155303881 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072028.1 MGP_C3HHeJ_G0029368.1 mouse_genomes_project 5 86834179 86859491 - MGP_C3HHeJ_P0072028 Tmprss11d protein_coding protein_coding MGP_C3HHeJ_T0072029.1 MGP_C3HHeJ_G0029368.1 mouse_genomes_project 5 86834179 86903094 - MGP_C3HHeJ_P0072029 Tmprss11d protein_coding protein_coding MGP_C3HHeJ_T0004752.1 MGP_C3HHeJ_G0004089.1 mouse_genomes_project 5 126289456 126308037 - Gm15857 antisense antisense MGP_C3HHeJ_T0069930.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883833 18963305 + Gsap protein_coding retained_intron MGP_C3HHeJ_T0069931.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883845 18994058 + MGP_C3HHeJ_P0069931 Gsap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069932.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883867 18994080 + MGP_C3HHeJ_P0069932 Gsap protein_coding protein_coding MGP_C3HHeJ_T0069933.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883877 18886861 + Gsap protein_coding processed_transcript MGP_C3HHeJ_T0069934.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883890 18955329 + MGP_C3HHeJ_P0069934 Gsap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069935.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883891 18990999 + MGP_C3HHeJ_P0069935 Gsap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069936.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18883891 18990999 + MGP_C3HHeJ_P0069936 Gsap protein_coding protein_coding MGP_C3HHeJ_T0069937.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18954697 18961822 + Gsap protein_coding retained_intron MGP_C3HHeJ_T0069938.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18992145 19018117 + MGP_C3HHeJ_P0069938 Gsap protein_coding protein_coding MGP_C3HHeJ_T0069939.1 MGP_C3HHeJ_G0029010.1 mouse_genomes_project 5 18992225 19018118 + Gsap protein_coding processed_transcript MGP_C3HHeJ_T0001680.1 MGP_C3HHeJ_G0001604.1 mouse_genomes_project 5 92989628 92990186 - TEC TEC MGP_C3HHeJ_T0001817.1 MGP_C3HHeJ_G0001740.1 mouse_genomes_project 5 134920849 134923709 - TEC TEC MGP_C3HHeJ_T0004765.1 MGP_C3HHeJ_G0004096.1 mouse_genomes_project 5 127822187 127822699 - Gm43777 antisense antisense MGP_C3HHeJ_T0072230.1 MGP_C3HHeJ_G0029433.1 mouse_genomes_project 5 91764839 91772881 + MGP_C3HHeJ_P0072230 Epgn protein_coding protein_coding MGP_C3HHeJ_T0072231.1 MGP_C3HHeJ_G0029433.1 mouse_genomes_project 5 91764839 91773883 + MGP_C3HHeJ_P0072231 Epgn protein_coding protein_coding MGP_C3HHeJ_T0099457.1 MGP_C3HHeJ_G0037651.1 mouse_genomes_project 5 86609337 86609507 + Gm24524 snRNA snRNA MGP_C3HHeJ_T0008213.1 MGP_C3HHeJ_G0006675.1 mouse_genomes_project 5 114262099 114263536 + lincRNA lincRNA MGP_C3HHeJ_T0072414.1 MGP_C3HHeJ_G0029474.1 mouse_genomes_project 5 99745530 99746580 + MGP_C3HHeJ_P0072414 Gm11111 protein_coding protein_coding MGP_C3HHeJ_T0072597.1 MGP_C3HHeJ_G0029510.1 mouse_genomes_project 5 105681104 105693401 + MGP_C3HHeJ_P0072597 Ibsp protein_coding protein_coding MGP_C3HHeJ_T0014892.1 MGP_C3HHeJ_G0012996.1 mouse_genomes_project 5 94225429 94227890 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072131.1 MGP_C3HHeJ_G0029405.1 mouse_genomes_project 5 89102072 89114882 + MGP_C3HHeJ_P0072131 Ambn protein_coding protein_coding MGP_C3HHeJ_T0072132.1 MGP_C3HHeJ_G0029405.1 mouse_genomes_project 5 89102092 89115231 + MGP_C3HHeJ_P0072132 Ambn protein_coding protein_coding MGP_C3HHeJ_T0072482.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101793614 101823674 + MGP_C3HHeJ_P0072482 Cops4 protein_coding protein_coding MGP_C3HHeJ_T0072483.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101793748 101808279 + Cops4 protein_coding retained_intron MGP_C3HHeJ_T0072484.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101793762 101813654 + MGP_C3HHeJ_P0072484 Cops4 protein_coding protein_coding MGP_C3HHeJ_T0072485.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101793777 101809575 + MGP_C3HHeJ_P0072485 Cops4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072486.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101794042 101813540 + MGP_C3HHeJ_P0072486 Cops4 protein_coding protein_coding MGP_C3HHeJ_T0072487.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101804826 101819839 + MGP_C3HHeJ_P0072487 Cops4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072488.1 MGP_C3HHeJ_G0029486.1 mouse_genomes_project 5 101808425 101823651 + Cops4 protein_coding retained_intron MGP_C3HHeJ_T0070005.1 MGP_C3HHeJ_G0029024.1 mouse_genomes_project 5 20527105 21081088 + MGP_C3HHeJ_P0070005 Lhfpl3 protein_coding protein_coding MGP_C3HHeJ_T0070007.1 MGP_C3HHeJ_G0029024.1 mouse_genomes_project 5 20896051 21081078 + MGP_C3HHeJ_P0070007 Lhfpl3 protein_coding protein_coding MGP_C3HHeJ_T0008143.1 MGP_C3HHeJ_G0006632.1 mouse_genomes_project 5 101469019 101476331 + 2310034O05Rik lincRNA lincRNA MGP_C3HHeJ_T0008144.1 MGP_C3HHeJ_G0006632.1 mouse_genomes_project 5 101469035 101475023 + 2310034O05Rik lincRNA lincRNA MGP_C3HHeJ_T0075247.1 MGP_C3HHeJ_G0030010.1 mouse_genomes_project 5 146674575 146678814 - MGP_C3HHeJ_P0075247 Papolb protein_coding protein_coding MGP_C3HHeJ_T0001761.1 MGP_C3HHeJ_G0001685.1 mouse_genomes_project 5 123164088 123165073 - TEC TEC MGP_C3HHeJ_T0069681.1 MGP_C3HHeJ_G0028970.1 mouse_genomes_project 5 1741852 1746049 - MGP_C3HHeJ_P0069681 Fzd1 protein_coding protein_coding MGP_C3HHeJ_T0071438.1 MGP_C3HHeJ_G0029270.1 mouse_genomes_project 5 64496232 64572476 + MGP_C3HHeJ_P0071438 Fam114a1 protein_coding protein_coding MGP_C3HHeJ_T0071439.1 MGP_C3HHeJ_G0029270.1 mouse_genomes_project 5 64499528 64533451 + MGP_C3HHeJ_P0071439 Fam114a1 protein_coding protein_coding MGP_C3HHeJ_T0014821.1 MGP_C3HHeJ_G0012925.1 mouse_genomes_project 5 61103010 61103634 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069836.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443395 6656284 + MGP_C3HHeJ_P0069836 9330182L06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069837.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443404 6639619 + MGP_C3HHeJ_P0069837 9330182L06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069838.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443407 6579020 + 9330182L06Rik protein_coding retained_intron MGP_C3HHeJ_T0069839.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443409 6640003 + MGP_C3HHeJ_P0069839 9330182L06Rik protein_coding protein_coding MGP_C3HHeJ_T0069840.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443409 6657265 + MGP_C3HHeJ_P0069840 9330182L06Rik protein_coding protein_coding MGP_C3HHeJ_T0069841.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443426 6658373 + MGP_C3HHeJ_P0069841 9330182L06Rik protein_coding protein_coding MGP_C3HHeJ_T0069842.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6443452 6637506 + MGP_C3HHeJ_P0069842 9330182L06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069843.1 MGP_C3HHeJ_G0028992.1 mouse_genomes_project 5 6590354 6595173 + 9330182L06Rik protein_coding retained_intron MGP_C3HHeJ_T0073347.1 MGP_C3HHeJ_G0029665.1 mouse_genomes_project 5 117791055 117800486 + MGP_C3HHeJ_P0073347 Pla2g1b protein_coding protein_coding MGP_C3HHeJ_T0073348.1 MGP_C3HHeJ_G0029665.1 mouse_genomes_project 5 117791059 117800474 + Pla2g1b protein_coding processed_transcript MGP_C3HHeJ_T0073349.1 MGP_C3HHeJ_G0029665.1 mouse_genomes_project 5 117791059 117800500 + MGP_C3HHeJ_P0073349 Pla2g1b protein_coding protein_coding MGP_C3HHeJ_T0073350.1 MGP_C3HHeJ_G0029665.1 mouse_genomes_project 5 117791065 117800339 + MGP_C3HHeJ_P0073350 Pla2g1b protein_coding protein_coding MGP_C3HHeJ_T0073351.1 MGP_C3HHeJ_G0029665.1 mouse_genomes_project 5 117791065 117797435 + MGP_C3HHeJ_P0073351 Pla2g1b protein_coding protein_coding MGP_C3HHeJ_T0071736.1 MGP_C3HHeJ_G0029319.1 mouse_genomes_project 5 72786751 72851578 + MGP_C3HHeJ_P0071736 Slain2 protein_coding protein_coding MGP_C3HHeJ_T0071737.1 MGP_C3HHeJ_G0029319.1 mouse_genomes_project 5 72786816 72851560 + MGP_C3HHeJ_P0071737 Slain2 protein_coding protein_coding MGP_C3HHeJ_T0071738.1 MGP_C3HHeJ_G0029319.1 mouse_genomes_project 5 72786863 72790933 + Slain2 protein_coding retained_intron MGP_C3HHeJ_T0071739.1 MGP_C3HHeJ_G0029319.1 mouse_genomes_project 5 72787115 72828722 + MGP_C3HHeJ_P0071739 Slain2 protein_coding protein_coding MGP_C3HHeJ_T0071740.1 MGP_C3HHeJ_G0029319.1 mouse_genomes_project 5 72819856 72847451 + Slain2 protein_coding retained_intron MGP_C3HHeJ_T0070667.1 MGP_C3HHeJ_G0029140.1 mouse_genomes_project 5 31456708 31518812 + MGP_C3HHeJ_P0070667 Slc5a1 protein_coding protein_coding MGP_C3HHeJ_T0008378.1 MGP_C3HHeJ_G0006790.1 mouse_genomes_project 5 154010576 154017208 + 2310047D07Rik lincRNA lincRNA MGP_C3HHeJ_T0008380.1 MGP_C3HHeJ_G0006790.1 mouse_genomes_project 5 154016377 154017190 + 2310047D07Rik lincRNA lincRNA MGP_C3HHeJ_T0008324.1 MGP_C3HHeJ_G0006745.1 mouse_genomes_project 5 137418259 137419056 - Gm15627 lincRNA lincRNA MGP_C3HHeJ_T0014720.1 MGP_C3HHeJ_G0012824.1 mouse_genomes_project 5 20716819 20717408 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001797.1 MGP_C3HHeJ_G0001720.1 mouse_genomes_project 5 130738313 130739087 + TEC TEC MGP_C3HHeJ_T0099456.1 MGP_C3HHeJ_G0037650.1 mouse_genomes_project 5 86323146 86323307 + Gm24626 snRNA snRNA MGP_C3HHeJ_T0008249.1 MGP_C3HHeJ_G0006698.1 mouse_genomes_project 5 121399132 121401839 - lincRNA lincRNA MGP_C3HHeJ_T0008253.1 MGP_C3HHeJ_G0006702.1 mouse_genomes_project 5 121736990 121742766 - Gm7538 lincRNA lincRNA MGP_C3HHeJ_T0014755.1 MGP_C3HHeJ_G0012859.1 mouse_genomes_project 5 30809593 30809988 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001735.1 MGP_C3HHeJ_G0001659.1 mouse_genomes_project 5 116021572 116024848 + TEC TEC MGP_C3HHeJ_T0004593.1 MGP_C3HHeJ_G0003973.1 mouse_genomes_project 5 33103706 33132111 - Gm42560 antisense antisense MGP_C3HHeJ_T0008005.1 MGP_C3HHeJ_G0006524.1 mouse_genomes_project 5 31802592 31803432 - Gm43851 lincRNA lincRNA MGP_C3HHeJ_T0014872.1 MGP_C3HHeJ_G0012976.1 mouse_genomes_project 5 88642000 88643858 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075708.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155381319 155387239 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0075709.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155381319 155431986 + MGP_C3HHeJ_P0075709 Brca2 protein_coding protein_coding MGP_C3HHeJ_T0075710.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155381321 155394376 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0075711.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155381321 155397148 + MGP_C3HHeJ_P0075711 Brca2 protein_coding protein_coding MGP_C3HHeJ_T0075712.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155381333 155431987 + MGP_C3HHeJ_P0075712 Brca2 protein_coding protein_coding MGP_C3HHeJ_T0075713.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155381379 155385374 + Brca2 protein_coding processed_transcript MGP_C3HHeJ_T0075714.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155386583 155389801 + Brca2 protein_coding processed_transcript MGP_C3HHeJ_T0075715.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155413004 155415239 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0075716.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155414514 155418835 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0075717.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155418905 155422301 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0075718.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155428761 155431986 + Brca2 protein_coding processed_transcript MGP_C3HHeJ_T0075719.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155429042 155431572 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0075720.1 MGP_C3HHeJ_G0030106.1 mouse_genomes_project 5 155430804 155432569 + Brca2 protein_coding retained_intron MGP_C3HHeJ_T0072575.1 MGP_C3HHeJ_G0029503.1 mouse_genomes_project 5 105238239 105262712 - MGP_C3HHeJ_P0072575 Klhl8 protein_coding protein_coding MGP_C3HHeJ_T0072576.1 MGP_C3HHeJ_G0029503.1 mouse_genomes_project 5 105238239 105262712 - MGP_C3HHeJ_P0072576 Klhl8 protein_coding protein_coding MGP_C3HHeJ_T0072577.1 MGP_C3HHeJ_G0029503.1 mouse_genomes_project 5 105238316 105287795 - MGP_C3HHeJ_P0072577 Klhl8 protein_coding protein_coding MGP_C3HHeJ_T0072578.1 MGP_C3HHeJ_G0029503.1 mouse_genomes_project 5 105238346 105262712 - MGP_C3HHeJ_P0072578 Klhl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072579.1 MGP_C3HHeJ_G0029503.1 mouse_genomes_project 5 105246750 105250811 - Klhl8 protein_coding retained_intron MGP_C3HHeJ_T0001660.1 MGP_C3HHeJ_G0001584.1 mouse_genomes_project 5 74225776 74226248 - TEC TEC MGP_C3HHeJ_T0072407.1 MGP_C3HHeJ_G0029471.1 mouse_genomes_project 5 99362668 99370680 + MGP_C3HHeJ_P0072407 Prdm8 protein_coding protein_coding MGP_C3HHeJ_T0015022.1 MGP_C3HHeJ_G0013126.1 mouse_genomes_project 5 150724279 150724753 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071556.1 MGP_C3HHeJ_G0029288.1 mouse_genomes_project 5 65869613 65910855 + MGP_C3HHeJ_P0071556 Nsun7 protein_coding protein_coding MGP_C3HHeJ_T0071557.1 MGP_C3HHeJ_G0029288.1 mouse_genomes_project 5 65869628 65911819 + MGP_C3HHeJ_P0071557 Nsun7 protein_coding protein_coding MGP_C3HHeJ_T0071558.1 MGP_C3HHeJ_G0029288.1 mouse_genomes_project 5 65869734 65877141 + Nsun7 protein_coding retained_intron MGP_C3HHeJ_T0071559.1 MGP_C3HHeJ_G0029288.1 mouse_genomes_project 5 65870028 65911808 + MGP_C3HHeJ_P0071559 Nsun7 protein_coding protein_coding MGP_C3HHeJ_T0011521.1 MGP_C3HHeJ_G0009654.1 mouse_genomes_project 5 154028420 154028713 - Gm24105 misc_RNA misc_RNA MGP_C3HHeJ_T0010583.1 MGP_C3HHeJ_G0008716.1 mouse_genomes_project 5 27445303 27445370 - Gm23801 miRNA miRNA MGP_C3HHeJ_T0004711.1 MGP_C3HHeJ_G0004060.1 mouse_genomes_project 5 116948597 116949164 - Gm42789 antisense antisense MGP_C3HHeJ_T0072286.1 MGP_C3HHeJ_G0029447.1 mouse_genomes_project 5 93131301 93137979 - MGP_C3HHeJ_P0072286 Cxcl9 protein_coding protein_coding MGP_C3HHeJ_T0072287.1 MGP_C3HHeJ_G0029447.1 mouse_genomes_project 5 93136519 93137978 - Cxcl9 protein_coding retained_intron MGP_C3HHeJ_T0070065.1 MGP_C3HHeJ_G0029035.1 mouse_genomes_project 5 22310299 22329921 + MGP_C3HHeJ_P0070065 Nos3 protein_coding protein_coding MGP_C3HHeJ_T0070066.1 MGP_C3HHeJ_G0029035.1 mouse_genomes_project 5 22310299 22329774 + MGP_C3HHeJ_P0070066 Nos3 protein_coding protein_coding MGP_C3HHeJ_T0001513.1 MGP_C3HHeJ_G0001440.1 mouse_genomes_project 5 44434117 44437536 - TEC TEC MGP_C3HHeJ_T0070218.1 MGP_C3HHeJ_G0029067.1 mouse_genomes_project 5 26264584 26271008 + MGP_C3HHeJ_P0070218 En2 protein_coding protein_coding MGP_C3HHeJ_T0008110.1 MGP_C3HHeJ_G0006603.1 mouse_genomes_project 5 87248812 87341640 + Gm43055 lincRNA lincRNA MGP_C3HHeJ_T0004822.1 MGP_C3HHeJ_G0004137.1 mouse_genomes_project 5 154204581 154207829 - Gm43150 antisense antisense MGP_C3HHeJ_T0071047.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35779156 35787517 - MGP_C3HHeJ_P0071047 Evc protein_coding protein_coding MGP_C3HHeJ_T0071048.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35779811 35817853 - MGP_C3HHeJ_P0071048 Evc protein_coding protein_coding MGP_C3HHeJ_T0071049.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35779873 35792650 - Evc protein_coding retained_intron MGP_C3HHeJ_T0071050.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35779918 35781048 - MGP_C3HHeJ_P0071050 Evc protein_coding protein_coding MGP_C3HHeJ_T0071051.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35793554 35817926 - MGP_C3HHeJ_P0071051 Evc protein_coding protein_coding MGP_C3HHeJ_T0071052.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35794804 35798605 - Evc protein_coding retained_intron MGP_C3HHeJ_T0071053.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35796440 35798724 - Evc protein_coding retained_intron MGP_C3HHeJ_T0071054.1 MGP_C3HHeJ_G0029200.1 mouse_genomes_project 5 35799417 35817938 - Evc protein_coding retained_intron MGP_C3HHeJ_T0070901.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33478286 33485205 + MGP_C3HHeJ_P0070901 Hgfac protein_coding protein_coding MGP_C3HHeJ_T0070902.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33478354 33485242 + Hgfac protein_coding retained_intron MGP_C3HHeJ_T0070903.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33478354 33480463 + MGP_C3HHeJ_P0070903 Hgfac protein_coding protein_coding MGP_C3HHeJ_T0070904.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33480387 33482227 + Hgfac protein_coding retained_intron MGP_C3HHeJ_T0070905.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33481129 33483744 + MGP_C3HHeJ_P0070905 Hgfac protein_coding protein_coding MGP_C3HHeJ_T0070906.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33481606 33482692 + Hgfac protein_coding retained_intron MGP_C3HHeJ_T0070907.1 MGP_C3HHeJ_G0029173.1 mouse_genomes_project 5 33483345 33485187 + Hgfac protein_coding retained_intron MGP_C3HHeJ_T0008057.1 MGP_C3HHeJ_G0006563.1 mouse_genomes_project 5 57736356 57739165 + 1700029E06Rik lincRNA lincRNA MGP_C3HHeJ_T0014832.1 MGP_C3HHeJ_G0012936.1 mouse_genomes_project 5 67950956 67951281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014814.1 MGP_C3HHeJ_G0012918.1 mouse_genomes_project 5 59356608 59356802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011510.1 MGP_C3HHeJ_G0009643.1 mouse_genomes_project 5 113319718 113319878 - Gm27680 misc_RNA misc_RNA MGP_C3HHeJ_T0004750.1 MGP_C3HHeJ_G0004088.1 mouse_genomes_project 5 125966826 125974600 - Gm2479 antisense antisense MGP_C3HHeJ_T0004751.1 MGP_C3HHeJ_G0004088.1 mouse_genomes_project 5 125966991 125972398 - Gm2479 antisense antisense MGP_C3HHeJ_T0010615.1 MGP_C3HHeJ_G0008748.1 mouse_genomes_project 5 105678584 105678694 + Gm23616 miRNA miRNA MGP_C3HHeJ_T0075434.1 MGP_C3HHeJ_G0030051.1 mouse_genomes_project 5 149214132 149242795 - MGP_C3HHeJ_P0075434 Kpna7 protein_coding protein_coding MGP_C3HHeJ_T0075435.1 MGP_C3HHeJ_G0030051.1 mouse_genomes_project 5 149214340 149241785 - MGP_C3HHeJ_P0075435 Kpna7 protein_coding protein_coding MGP_C3HHeJ_T0075436.1 MGP_C3HHeJ_G0030051.1 mouse_genomes_project 5 149216340 149240180 - MGP_C3HHeJ_P0075436 Kpna7 protein_coding protein_coding MGP_C3HHeJ_T0075437.1 MGP_C3HHeJ_G0030051.1 mouse_genomes_project 5 149224567 149235673 - Kpna7 protein_coding processed_transcript MGP_C3HHeJ_T0075438.1 MGP_C3HHeJ_G0030051.1 mouse_genomes_project 5 149232135 149239566 - MGP_C3HHeJ_P0075438 Kpna7 protein_coding protein_coding MGP_C3HHeJ_T0075439.1 MGP_C3HHeJ_G0030051.1 mouse_genomes_project 5 149238271 149338825 - MGP_C3HHeJ_P0075439 Kpna7 protein_coding protein_coding MGP_C3HHeJ_T0071896.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76704960 76706809 + MGP_C3HHeJ_P0071896 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071897.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76706136 76897803 + MGP_C3HHeJ_P0071897 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071898.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76706138 76707562 + C530008M17Rik protein_coding processed_transcript MGP_C3HHeJ_T0071899.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76706174 76842637 + C530008M17Rik protein_coding processed_transcript MGP_C3HHeJ_T0071900.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76805040 76934512 + MGP_C3HHeJ_P0071900 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071901.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76863703 76899511 + MGP_C3HHeJ_P0071901 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071902.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76897520 76934727 + MGP_C3HHeJ_P0071902 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071903.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76897520 76934736 + MGP_C3HHeJ_P0071903 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071904.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76897540 76899513 + MGP_C3HHeJ_P0071904 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071905.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76916720 76925650 + C530008M17Rik protein_coding retained_intron MGP_C3HHeJ_T0071906.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76925252 76929587 + MGP_C3HHeJ_P0071906 C530008M17Rik protein_coding protein_coding MGP_C3HHeJ_T0071907.1 MGP_C3HHeJ_G0029347.1 mouse_genomes_project 5 76930354 76931857 + C530008M17Rik protein_coding processed_transcript MGP_C3HHeJ_T0008283.1 MGP_C3HHeJ_G0006721.1 mouse_genomes_project 5 128276594 128316260 - Gm42637 lincRNA lincRNA MGP_C3HHeJ_T0075614.1 MGP_C3HHeJ_G0030091.1 mouse_genomes_project 5 153017882 153093317 - MGP_C3HHeJ_P0075614 Slc7a1 protein_coding protein_coding MGP_C3HHeJ_T0075615.1 MGP_C3HHeJ_G0030091.1 mouse_genomes_project 5 153025177 153084810 - MGP_C3HHeJ_P0075615 Slc7a1 protein_coding protein_coding MGP_C3HHeJ_T0075616.1 MGP_C3HHeJ_G0030091.1 mouse_genomes_project 5 153031989 153034140 - Slc7a1 protein_coding retained_intron MGP_C3HHeJ_T0075617.1 MGP_C3HHeJ_G0030091.1 mouse_genomes_project 5 153033491 153093204 - MGP_C3HHeJ_P0075617 Slc7a1 protein_coding protein_coding MGP_C3HHeJ_T0075618.1 MGP_C3HHeJ_G0030091.1 mouse_genomes_project 5 153043590 153063865 - MGP_C3HHeJ_P0075618 Slc7a1 protein_coding protein_coding MGP_C3HHeJ_T0075619.1 MGP_C3HHeJ_G0030091.1 mouse_genomes_project 5 153083411 153085644 - Slc7a1 protein_coding retained_intron MGP_C3HHeJ_T0071324.1 MGP_C3HHeJ_G0029248.1 mouse_genomes_project 5 51776902 51805643 + MGP_C3HHeJ_P0071324 Pi4k2b protein_coding protein_coding MGP_C3HHeJ_T0071325.1 MGP_C3HHeJ_G0029248.1 mouse_genomes_project 5 51776934 51786860 + MGP_C3HHeJ_P0071325 Pi4k2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071326.1 MGP_C3HHeJ_G0029248.1 mouse_genomes_project 5 51776938 51805643 + MGP_C3HHeJ_P0071326 Pi4k2b protein_coding protein_coding MGP_C3HHeJ_T0071327.1 MGP_C3HHeJ_G0029248.1 mouse_genomes_project 5 51789948 51792829 + Pi4k2b protein_coding retained_intron MGP_C3HHeJ_T0072404.1 MGP_C3HHeJ_G0029470.1 mouse_genomes_project 5 99056698 99200889 - MGP_C3HHeJ_P0072404 Antxr2 protein_coding protein_coding MGP_C3HHeJ_T0072405.1 MGP_C3HHeJ_G0029470.1 mouse_genomes_project 5 99094622 99200970 - MGP_C3HHeJ_P0072405 Antxr2 protein_coding protein_coding MGP_C3HHeJ_T0072406.1 MGP_C3HHeJ_G0029470.1 mouse_genomes_project 5 99129391 99170981 - Antxr2 protein_coding processed_transcript MGP_C3HHeJ_T0098147.1 MGP_C3HHeJ_G0036359.1 mouse_genomes_project 5 91643913 91644030 + Gm22816 rRNA rRNA MGP_C3HHeJ_T0074542.1 MGP_C3HHeJ_G0029866.1 mouse_genomes_project 5 138493313 138494974 + MGP_C3HHeJ_P0074542 Dnajc30 protein_coding protein_coding MGP_C3HHeJ_T0008082.1 MGP_C3HHeJ_G0006581.1 mouse_genomes_project 5 73877534 73885039 + Gm43801 lincRNA lincRNA MGP_C3HHeJ_T0072379.1 MGP_C3HHeJ_G0029464.1 mouse_genomes_project 5 97485532 97910502 + MGP_C3HHeJ_P0072379 Fras1 protein_coding protein_coding MGP_C3HHeJ_T0072380.1 MGP_C3HHeJ_G0029464.1 mouse_genomes_project 5 97485783 97659862 + Fras1 protein_coding retained_intron MGP_C3HHeJ_T0072381.1 MGP_C3HHeJ_G0029464.1 mouse_genomes_project 5 97486012 97502084 + Fras1 protein_coding retained_intron MGP_C3HHeJ_T0072382.1 MGP_C3HHeJ_G0029464.1 mouse_genomes_project 5 97738264 97760525 + Fras1 protein_coding processed_transcript MGP_C3HHeJ_T0072383.1 MGP_C3HHeJ_G0029464.1 mouse_genomes_project 5 97738481 97760637 + Fras1 protein_coding processed_transcript MGP_C3HHeJ_T0072384.1 MGP_C3HHeJ_G0029464.1 mouse_genomes_project 5 97752394 97760525 + Fras1 protein_coding processed_transcript MGP_C3HHeJ_T0004679.1 MGP_C3HHeJ_G0004038.1 mouse_genomes_project 5 102126177 102132545 - 4930458D05Rik antisense antisense MGP_C3HHeJ_T0004600.1 MGP_C3HHeJ_G0003980.1 mouse_genomes_project 5 36822387 36825952 - Gm26560 antisense antisense MGP_C3HHeJ_T0074746.1 MGP_C3HHeJ_G0029904.1 mouse_genomes_project 5 140536880 140549616 + MGP_C3HHeJ_P0074746 Fis1 protein_coding protein_coding MGP_C3HHeJ_T0074747.1 MGP_C3HHeJ_G0029904.1 mouse_genomes_project 5 140537011 140549533 + MGP_C3HHeJ_P0074747 Fis1 protein_coding protein_coding MGP_C3HHeJ_T0074748.1 MGP_C3HHeJ_G0029904.1 mouse_genomes_project 5 140545473 140549618 + MGP_C3HHeJ_P0074748 Fis1 protein_coding protein_coding MGP_C3HHeJ_T0074749.1 MGP_C3HHeJ_G0029904.1 mouse_genomes_project 5 140545829 140549341 + Fis1 protein_coding processed_transcript MGP_C3HHeJ_T0074750.1 MGP_C3HHeJ_G0029904.1 mouse_genomes_project 5 140545840 140549494 + Fis1 protein_coding processed_transcript MGP_C3HHeJ_T0074751.1 MGP_C3HHeJ_G0029904.1 mouse_genomes_project 5 140546241 140549395 + Fis1 protein_coding processed_transcript MGP_C3HHeJ_T0007982.1 MGP_C3HHeJ_G0006509.1 mouse_genomes_project 5 23497509 23499984 + 4831440E17Rik lincRNA lincRNA MGP_C3HHeJ_T0072750.1 MGP_C3HHeJ_G0029544.1 mouse_genomes_project 5 109525720 109527398 + MGP_C3HHeJ_P0072750 Ube2d2b protein_coding protein_coding MGP_C3HHeJ_T0071560.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65912475 65927497 - Apbb2 protein_coding retained_intron MGP_C3HHeJ_T0071561.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65912497 66236221 - MGP_C3HHeJ_P0071561 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071562.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65912500 66236144 - MGP_C3HHeJ_P0071562 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071563.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65912500 66236247 - MGP_C3HHeJ_P0071563 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071564.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65912612 66236126 - MGP_C3HHeJ_P0071564 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071565.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65914431 66114873 - Apbb2 protein_coding retained_intron MGP_C3HHeJ_T0071566.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65915642 65953528 - Apbb2 protein_coding processed_transcript MGP_C3HHeJ_T0071567.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65915658 66236134 - MGP_C3HHeJ_P0071567 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071568.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65915658 66236134 - MGP_C3HHeJ_P0071568 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071569.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65915975 66114872 - MGP_C3HHeJ_P0071569 Apbb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071570.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 65921347 65953326 - Apbb2 protein_coding processed_transcript MGP_C3HHeJ_T0071571.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66016491 66236146 - Apbb2 protein_coding retained_intron MGP_C3HHeJ_T0071572.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66016491 66236133 - Apbb2 protein_coding retained_intron MGP_C3HHeJ_T0071573.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66074270 66236103 - MGP_C3HHeJ_P0071573 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071574.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66074283 66130881 - MGP_C3HHeJ_P0071574 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071575.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66074312 66236134 - MGP_C3HHeJ_P0071575 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071576.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66074516 66236237 - MGP_C3HHeJ_P0071576 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071577.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66074549 66130888 - MGP_C3HHeJ_P0071577 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071578.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66074555 66164059 - MGP_C3HHeJ_P0071578 Apbb2 protein_coding protein_coding MGP_C3HHeJ_T0071579.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66084197 66236135 - Apbb2 protein_coding retained_intron MGP_C3HHeJ_T0071580.1 MGP_C3HHeJ_G0029289.1 mouse_genomes_project 5 66157832 66236151 - Apbb2 protein_coding retained_intron MGP_C3HHeJ_T0010593.1 MGP_C3HHeJ_G0008726.1 mouse_genomes_project 5 47113197 47113307 + Mir218-1 miRNA miRNA MGP_C3HHeJ_T0014856.1 MGP_C3HHeJ_G0012960.1 mouse_genomes_project 5 78616015 78616879 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014818.1 MGP_C3HHeJ_G0012922.1 mouse_genomes_project 5 60191943 60192712 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098297.1 MGP_C3HHeJ_G0036509.1 mouse_genomes_project 5 138483101 138483230 - Gm25492 scaRNA scaRNA MGP_C3HHeJ_T0075446.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149371128 149386302 + MGP_C3HHeJ_P0075446 Arpc1b protein_coding protein_coding MGP_C3HHeJ_T0075447.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149371171 149379530 + Arpc1b protein_coding processed_transcript MGP_C3HHeJ_T0075448.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149371214 149380990 + Arpc1b protein_coding retained_intron MGP_C3HHeJ_T0075449.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149371225 149384808 + MGP_C3HHeJ_P0075449 Arpc1b protein_coding protein_coding MGP_C3HHeJ_T0075450.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149371229 149379370 + MGP_C3HHeJ_P0075450 Arpc1b protein_coding protein_coding MGP_C3HHeJ_T0075451.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149380413 149383521 + MGP_C3HHeJ_P0075451 Arpc1b protein_coding protein_coding MGP_C3HHeJ_T0075452.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149380708 149382441 + Arpc1b protein_coding retained_intron MGP_C3HHeJ_T0075453.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149380708 149383667 + Arpc1b protein_coding processed_transcript MGP_C3HHeJ_T0075454.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149382625 149384065 + Arpc1b protein_coding retained_intron MGP_C3HHeJ_T0075455.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149383492 149388277 + MGP_C3HHeJ_P0075455 Arpc1b protein_coding protein_coding MGP_C3HHeJ_T0075456.1 MGP_C3HHeJ_G0030053.1 mouse_genomes_project 5 149383957 149384815 + Arpc1b protein_coding retained_intron MGP_C3HHeJ_T0072990.1 MGP_C3HHeJ_G0029592.1 mouse_genomes_project 5 112831892 112833247 + MGP_C3HHeJ_P0072990 Chek2 protein_coding protein_coding MGP_C3HHeJ_T0072991.1 MGP_C3HHeJ_G0029592.1 mouse_genomes_project 5 112831896 112869849 + MGP_C3HHeJ_P0072991 Chek2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072992.1 MGP_C3HHeJ_G0029592.1 mouse_genomes_project 5 112831913 112869861 + MGP_C3HHeJ_P0072992 Chek2 protein_coding protein_coding MGP_C3HHeJ_T0072993.1 MGP_C3HHeJ_G0029592.1 mouse_genomes_project 5 112832142 112833253 + MGP_C3HHeJ_P0072993 Chek2 protein_coding protein_coding MGP_C3HHeJ_T0072994.1 MGP_C3HHeJ_G0029592.1 mouse_genomes_project 5 112833367 112843996 + Chek2 protein_coding retained_intron MGP_C3HHeJ_T0008164.1 MGP_C3HHeJ_G0006644.1 mouse_genomes_project 5 106983227 106988901 + Gm26519 lincRNA lincRNA MGP_C3HHeJ_T0102032.1 MGP_C3HHeJ_G0039997.1 mouse_genomes_project 5 57646881 57648588 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011494.1 MGP_C3HHeJ_G0009627.1 mouse_genomes_project 5 22787074 22787319 - Gm25363 misc_RNA misc_RNA MGP_C3HHeJ_T0001523.1 MGP_C3HHeJ_G0001450.1 mouse_genomes_project 5 47429236 47431817 - TEC TEC MGP_C3HHeJ_T0072167.1 MGP_C3HHeJ_G0029416.1 mouse_genomes_project 5 90353718 90564849 - MGP_C3HHeJ_P0072167 Adamts3 protein_coding protein_coding MGP_C3HHeJ_T0072168.1 MGP_C3HHeJ_G0029416.1 mouse_genomes_project 5 90353718 90564849 - MGP_C3HHeJ_P0072168 Adamts3 protein_coding protein_coding MGP_C3HHeJ_T0072169.1 MGP_C3HHeJ_G0029416.1 mouse_genomes_project 5 90514038 90565248 - MGP_C3HHeJ_P0072169 Adamts3 protein_coding protein_coding MGP_C3HHeJ_T0072170.1 MGP_C3HHeJ_G0029416.1 mouse_genomes_project 5 90542887 90564061 - Adamts3 protein_coding processed_transcript MGP_C3HHeJ_T0001596.1 MGP_C3HHeJ_G0001521.1 mouse_genomes_project 5 64961439 64963836 - TEC TEC MGP_C3HHeJ_T0074819.1 MGP_C3HHeJ_G0029919.1 mouse_genomes_project 5 140963197 140987803 + MGP_C3HHeJ_P0074819 Ephb4 protein_coding protein_coding MGP_C3HHeJ_T0074820.1 MGP_C3HHeJ_G0029919.1 mouse_genomes_project 5 140963229 140993764 + MGP_C3HHeJ_P0074820 Ephb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074821.1 MGP_C3HHeJ_G0029919.1 mouse_genomes_project 5 140963260 140987797 + MGP_C3HHeJ_P0074821 Ephb4 protein_coding protein_coding MGP_C3HHeJ_T0074822.1 MGP_C3HHeJ_G0029919.1 mouse_genomes_project 5 140963518 140987587 + MGP_C3HHeJ_P0074822 Ephb4 protein_coding protein_coding MGP_C3HHeJ_T0074823.1 MGP_C3HHeJ_G0029919.1 mouse_genomes_project 5 140963601 140987807 + MGP_C3HHeJ_P0074823 Ephb4 protein_coding protein_coding MGP_C3HHeJ_T0011500.1 MGP_C3HHeJ_G0009633.1 mouse_genomes_project 5 79990407 79990698 - Gm22553 misc_RNA misc_RNA MGP_C3HHeJ_T0070563.1 MGP_C3HHeJ_G0029124.1 mouse_genomes_project 5 29717832 29720569 + 4930548H24Rik protein_coding retained_intron MGP_C3HHeJ_T0070564.1 MGP_C3HHeJ_G0029124.1 mouse_genomes_project 5 29717951 29720569 + MGP_C3HHeJ_P0070564 4930548H24Rik protein_coding protein_coding MGP_C3HHeJ_T0073335.1 MGP_C3HHeJ_G0029661.1 mouse_genomes_project 5 117638906 117646847 - MGP_C3HHeJ_P0073335 Gatc protein_coding protein_coding MGP_C3HHeJ_T0075295.1 MGP_C3HHeJ_G0030019.1 mouse_genomes_project 5 147365704 147374247 - MGP_C3HHeJ_P0075295 Rbak protein_coding protein_coding MGP_C3HHeJ_T0075296.1 MGP_C3HHeJ_G0030019.1 mouse_genomes_project 5 147365704 147374292 - MGP_C3HHeJ_P0075296 Rbak protein_coding protein_coding MGP_C3HHeJ_T0075297.1 MGP_C3HHeJ_G0030019.1 mouse_genomes_project 5 147365705 147370253 - Rbak protein_coding retained_intron MGP_C3HHeJ_T0075298.1 MGP_C3HHeJ_G0030019.1 mouse_genomes_project 5 147372484 147374249 - Rbak protein_coding retained_intron MGP_C3HHeJ_T0069743.1 MGP_C3HHeJ_G0028979.1 mouse_genomes_project 5 4411944 4412317 + 4921511H03Rik protein_coding processed_transcript MGP_C3HHeJ_T0069744.1 MGP_C3HHeJ_G0028979.1 mouse_genomes_project 5 4411950 4419194 + MGP_C3HHeJ_P0069744 4921511H03Rik protein_coding protein_coding MGP_C3HHeJ_T0069745.1 MGP_C3HHeJ_G0028979.1 mouse_genomes_project 5 4411957 4415399 + MGP_C3HHeJ_P0069745 4921511H03Rik protein_coding protein_coding MGP_C3HHeJ_T0069746.1 MGP_C3HHeJ_G0028979.1 mouse_genomes_project 5 4411971 4413635 + MGP_C3HHeJ_P0069746 4921511H03Rik protein_coding protein_coding MGP_C3HHeJ_T0072403.1 MGP_C3HHeJ_G0029469.1 mouse_genomes_project 5 98617201 98619081 - MGP_C3HHeJ_P0072403 Gk2 protein_coding protein_coding MGP_C3HHeJ_T0073790.1 MGP_C3HHeJ_G0029746.1 mouse_genomes_project 5 125376810 125434958 - MGP_C3HHeJ_P0073790 Atp2a2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0073791.1 MGP_C3HHeJ_G0029746.1 mouse_genomes_project 5 125376810 125435447 - MGP_C3HHeJ_P0073791 Atp2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073792.1 MGP_C3HHeJ_G0029746.1 mouse_genomes_project 5 125376811 125435168 - MGP_C3HHeJ_P0073792 Atp2a2 protein_coding protein_coding MGP_C3HHeJ_T0073793.1 MGP_C3HHeJ_G0029746.1 mouse_genomes_project 5 125379637 125435498 - MGP_C3HHeJ_P0073793 Atp2a2 protein_coding protein_coding MGP_C3HHeJ_T0073794.1 MGP_C3HHeJ_G0029746.1 mouse_genomes_project 5 125422176 125434894 - Atp2a2 protein_coding processed_transcript MGP_C3HHeJ_T0073795.1 MGP_C3HHeJ_G0029746.1 mouse_genomes_project 5 125422229 125434890 - Atp2a2 protein_coding retained_intron MGP_C3HHeJ_T0001823.1 MGP_C3HHeJ_G0001746.1 mouse_genomes_project 5 135247161 135248135 - TEC TEC MGP_C3HHeJ_T0008002.1 MGP_C3HHeJ_G0006522.1 mouse_genomes_project 5 30655218 30663118 - Gm7596 lincRNA lincRNA MGP_C3HHeJ_T0008003.1 MGP_C3HHeJ_G0006522.1 mouse_genomes_project 5 30655244 30658514 - Gm7596 lincRNA lincRNA MGP_C3HHeJ_T0001515.1 MGP_C3HHeJ_G0001442.1 mouse_genomes_project 5 44528466 44529588 + TEC TEC MGP_C3HHeJ_T0074521.1 MGP_C3HHeJ_G0029864.1 mouse_genomes_project 5 138450697 138480219 + MGP_C3HHeJ_P0074521 Stx1a protein_coding protein_coding MGP_C3HHeJ_T0074522.1 MGP_C3HHeJ_G0029864.1 mouse_genomes_project 5 138450722 138474789 + MGP_C3HHeJ_P0074522 Stx1a protein_coding protein_coding MGP_C3HHeJ_T0074523.1 MGP_C3HHeJ_G0029864.1 mouse_genomes_project 5 138450775 138480219 + MGP_C3HHeJ_P0074523 Stx1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074524.1 MGP_C3HHeJ_G0029864.1 mouse_genomes_project 5 138466669 138477967 + Stx1a protein_coding processed_transcript MGP_C3HHeJ_T0074525.1 MGP_C3HHeJ_G0029864.1 mouse_genomes_project 5 138470218 138480218 + Stx1a protein_coding retained_intron MGP_C3HHeJ_T0074526.1 MGP_C3HHeJ_G0029864.1 mouse_genomes_project 5 138470424 138478076 + Stx1a protein_coding processed_transcript MGP_C3HHeJ_T0070008.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21289636 21363029 + MGP_C3HHeJ_P0070008 Kmt2e protein_coding protein_coding MGP_C3HHeJ_T0070009.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21289636 21344660 + MGP_C3HHeJ_P0070009 Kmt2e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070010.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21289644 21363029 + MGP_C3HHeJ_P0070010 Kmt2e protein_coding protein_coding MGP_C3HHeJ_T0070011.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21336818 21343711 + Kmt2e protein_coding processed_transcript MGP_C3HHeJ_T0070012.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21343760 21354475 + MGP_C3HHeJ_P0070012 Kmt2e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070013.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21343808 21361656 + MGP_C3HHeJ_P0070013 Kmt2e protein_coding protein_coding MGP_C3HHeJ_T0070014.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21350687 21358754 + MGP_C3HHeJ_P0070014 Kmt2e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070015.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21351224 21354625 + Kmt2e protein_coding retained_intron MGP_C3HHeJ_T0070016.1 MGP_C3HHeJ_G0029026.1 mouse_genomes_project 5 21356535 21358797 + MGP_C3HHeJ_P0070016 Kmt2e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001491.1 MGP_C3HHeJ_G0001418.1 mouse_genomes_project 5 42347049 42348531 - TEC TEC MGP_C3HHeJ_T0070791.1 MGP_C3HHeJ_G0029160.1 mouse_genomes_project 5 32597286 32692827 - MGP_C3HHeJ_P0070791 Zfyve28 protein_coding protein_coding MGP_C3HHeJ_T0070792.1 MGP_C3HHeJ_G0029160.1 mouse_genomes_project 5 32622308 32639127 - Zfyve28 protein_coding retained_intron MGP_C3HHeJ_T0070793.1 MGP_C3HHeJ_G0029160.1 mouse_genomes_project 5 32622393 32639589 - Zfyve28 protein_coding processed_transcript MGP_C3HHeJ_T0070794.1 MGP_C3HHeJ_G0029160.1 mouse_genomes_project 5 32628544 32650132 - Zfyve28 protein_coding retained_intron MGP_C3HHeJ_T0070795.1 MGP_C3HHeJ_G0029160.1 mouse_genomes_project 5 32633159 32692950 - Zfyve28 protein_coding processed_transcript MGP_C3HHeJ_T0070796.1 MGP_C3HHeJ_G0029160.1 mouse_genomes_project 5 32640982 32692938 - MGP_C3HHeJ_P0070796 Zfyve28 protein_coding protein_coding MGP_C3HHeJ_T0099491.1 MGP_C3HHeJ_G0037685.1 mouse_genomes_project 5 142006047 142006125 + Gm22956 snRNA snRNA MGP_C3HHeJ_T0075407.1 MGP_C3HHeJ_G0030045.1 mouse_genomes_project 5 148468839 148680036 + MGP_C3HHeJ_P0075407 Bri3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075408.1 MGP_C3HHeJ_G0030045.1 mouse_genomes_project 5 148468848 148477956 + MGP_C3HHeJ_P0075408 Bri3 protein_coding protein_coding MGP_C3HHeJ_T0073553.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123211709 123229397 - MGP_C3HHeJ_P0073553 Rita1 protein_coding protein_coding MGP_C3HHeJ_T0073554.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123219353 123228695 - MGP_C3HHeJ_P0073554 Rita1 protein_coding protein_coding MGP_C3HHeJ_T0073555.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123219354 123222985 - Rita1 protein_coding processed_transcript MGP_C3HHeJ_T0073556.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123224299 123229647 - Rita1 protein_coding processed_transcript MGP_C3HHeJ_T0073557.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123226314 123229647 - MGP_C3HHeJ_P0073557 Rita1 protein_coding protein_coding MGP_C3HHeJ_T0073558.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123226314 123229647 - MGP_C3HHeJ_P0073558 Rita1 protein_coding protein_coding MGP_C3HHeJ_T0073559.1 MGP_C3HHeJ_G0029703.1 mouse_genomes_project 5 123227167 123229628 - MGP_C3HHeJ_P0073559 Rita1 protein_coding protein_coding MGP_C3HHeJ_T0014934.1 MGP_C3HHeJ_G0013038.1 mouse_genomes_project 5 111057928 111059813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102066.1 MGP_C3HHeJ_G0040031.1 mouse_genomes_project 5 156530578 156535876 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001428.1 MGP_C3HHeJ_G0001358.1 mouse_genomes_project 5 13288788 13289969 + TEC TEC MGP_C3HHeJ_T0001781.1 MGP_C3HHeJ_G0001705.1 mouse_genomes_project 5 126402319 126404452 + TEC TEC MGP_C3HHeJ_T0014741.1 MGP_C3HHeJ_G0012845.1 mouse_genomes_project 5 25912487 25912968 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074926.1 MGP_C3HHeJ_G0029938.1 mouse_genomes_project 5 141449280 141454038 - MGP_C3HHeJ_P0074926 Mepce protein_coding protein_coding MGP_C3HHeJ_T0074927.1 MGP_C3HHeJ_G0029938.1 mouse_genomes_project 5 141449803 141454090 - MGP_C3HHeJ_P0074927 Mepce protein_coding protein_coding MGP_C3HHeJ_T0074928.1 MGP_C3HHeJ_G0029938.1 mouse_genomes_project 5 141449857 141450725 - Mepce protein_coding retained_intron MGP_C3HHeJ_T0074929.1 MGP_C3HHeJ_G0029938.1 mouse_genomes_project 5 141450504 141455030 - MGP_C3HHeJ_P0074929 Mepce protein_coding protein_coding MGP_C3HHeJ_T0074930.1 MGP_C3HHeJ_G0029938.1 mouse_genomes_project 5 141452260 141454066 - Mepce protein_coding processed_transcript MGP_C3HHeJ_T0014731.1 MGP_C3HHeJ_G0012835.1 mouse_genomes_project 5 23374129 23374406 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071815.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521196 74588537 + MGP_C3HHeJ_P0071815 Fip1l1 protein_coding protein_coding MGP_C3HHeJ_T0071816.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521218 74588547 + MGP_C3HHeJ_P0071816 Fip1l1 protein_coding protein_coding MGP_C3HHeJ_T0071817.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521226 74582177 + MGP_C3HHeJ_P0071817 Fip1l1 protein_coding protein_coding MGP_C3HHeJ_T0071818.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521228 74585892 + MGP_C3HHeJ_P0071818 Fip1l1 protein_coding protein_coding MGP_C3HHeJ_T0071819.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521231 74526316 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0071820.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521250 74581559 + MGP_C3HHeJ_P0071820 Fip1l1 protein_coding protein_coding MGP_C3HHeJ_T0071821.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521431 74575178 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0071822.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74521726 74531209 + Fip1l1 protein_coding processed_transcript MGP_C3HHeJ_T0071823.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74574483 74581659 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0071824.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74574528 74577970 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0071825.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74575875 74578165 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0071826.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74576549 74581749 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0071831.1 MGP_C3HHeJ_G0029333.1 mouse_genomes_project 5 74584466 74585677 + Fip1l1 protein_coding retained_intron MGP_C3HHeJ_T0074784.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140895932 140899929 + MGP_C3HHeJ_P0074784 Ache protein_coding protein_coding MGP_C3HHeJ_T0074785.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140896179 140899929 + MGP_C3HHeJ_P0074785 Ache protein_coding protein_coding MGP_C3HHeJ_T0074786.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140896179 140899929 + MGP_C3HHeJ_P0074786 Ache protein_coding protein_coding MGP_C3HHeJ_T0074787.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140896690 140904258 + MGP_C3HHeJ_P0074787 Ache protein_coding protein_coding MGP_C3HHeJ_T0074788.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140896696 140904253 + MGP_C3HHeJ_P0074788 Ache protein_coding protein_coding MGP_C3HHeJ_T0074789.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140896697 140904252 + MGP_C3HHeJ_P0074789 Ache protein_coding protein_coding MGP_C3HHeJ_T0074790.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140896698 140902123 + Ache protein_coding retained_intron MGP_C3HHeJ_T0074791.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140898862 140899929 + MGP_C3HHeJ_P0074791 Ache protein_coding protein_coding MGP_C3HHeJ_T0074792.1 MGP_C3HHeJ_G0029914.1 mouse_genomes_project 5 140899021 140899929 + MGP_C3HHeJ_P0074792 Ache protein_coding protein_coding MGP_C3HHeJ_T0008370.1 MGP_C3HHeJ_G0006784.1 mouse_genomes_project 5 153739385 153744566 - 5930430L01Rik lincRNA lincRNA MGP_C3HHeJ_T0008371.1 MGP_C3HHeJ_G0006784.1 mouse_genomes_project 5 153740412 153744558 - 5930430L01Rik lincRNA lincRNA MGP_C3HHeJ_T0072126.1 MGP_C3HHeJ_G0029400.1 mouse_genomes_project 5 88716101 88717065 - MGP_C3HHeJ_P0072126 Gm11116 protein_coding protein_coding MGP_C3HHeJ_T0099482.1 MGP_C3HHeJ_G0037676.1 mouse_genomes_project 5 125440064 125440165 + Gm22965 snRNA snRNA MGP_C3HHeJ_T0007984.1 MGP_C3HHeJ_G0006511.1 mouse_genomes_project 5 23676081 23676431 - Gm10062 lincRNA lincRNA MGP_C3HHeJ_T0007986.1 MGP_C3HHeJ_G0006511.1 mouse_genomes_project 5 23676088 23678403 - Gm10062 lincRNA lincRNA MGP_C3HHeJ_T0001489.1 MGP_C3HHeJ_G0001416.1 mouse_genomes_project 5 42117041 42121309 + TEC TEC MGP_C3HHeJ_T0001845.1 MGP_C3HHeJ_G0001767.1 mouse_genomes_project 5 138702557 138703361 + TEC TEC MGP_C3HHeJ_T0069697.1 MGP_C3HHeJ_G0028972.1 mouse_genomes_project 5 2485150 2522620 - MGP_C3HHeJ_P0069697 1700015F17Rik protein_coding protein_coding MGP_C3HHeJ_T0069698.1 MGP_C3HHeJ_G0028972.1 mouse_genomes_project 5 2485150 2505931 - MGP_C3HHeJ_P0069698 1700015F17Rik protein_coding protein_coding MGP_C3HHeJ_T0069699.1 MGP_C3HHeJ_G0028972.1 mouse_genomes_project 5 2485155 2522557 - MGP_C3HHeJ_P0069699 1700015F17Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0014760.1 MGP_C3HHeJ_G0012864.1 mouse_genomes_project 5 31611796 31612841 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008395.1 MGP_C3HHeJ_G0006800.1 mouse_genomes_project 5 155462100 155469172 - Gm43597 lincRNA lincRNA MGP_C3HHeJ_T0008396.1 MGP_C3HHeJ_G0006800.1 mouse_genomes_project 5 155462105 155469135 - Gm43597 lincRNA lincRNA MGP_C3HHeJ_T0008397.1 MGP_C3HHeJ_G0006800.1 mouse_genomes_project 5 155464067 155469052 - Gm43597 lincRNA lincRNA MGP_C3HHeJ_T0072807.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110360115 110382615 - MGP_C3HHeJ_P0072807 Gak protein_coding protein_coding MGP_C3HHeJ_T0072808.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110360118 110428214 - MGP_C3HHeJ_P0072808 Gak protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072809.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110360118 110428214 - MGP_C3HHeJ_P0072809 Gak protein_coding protein_coding MGP_C3HHeJ_T0072810.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110360124 110428214 - MGP_C3HHeJ_P0072810 Gak protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072811.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110360877 110362575 - Gak protein_coding retained_intron MGP_C3HHeJ_T0072812.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110362140 110428230 - MGP_C3HHeJ_P0072812 Gak protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072813.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110362680 110367953 - Gak protein_coding processed_transcript MGP_C3HHeJ_T0072814.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110367609 110371923 - Gak protein_coding retained_intron MGP_C3HHeJ_T0072815.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110371043 110422041 - Gak protein_coding retained_intron MGP_C3HHeJ_T0072816.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110374059 110382651 - MGP_C3HHeJ_P0072816 Gak protein_coding protein_coding MGP_C3HHeJ_T0072817.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110375335 110389422 - MGP_C3HHeJ_P0072817 Gak protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072818.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110406905 110427898 - Gak protein_coding processed_transcript MGP_C3HHeJ_T0072819.1 MGP_C3HHeJ_G0029557.1 mouse_genomes_project 5 110420261 110428168 - MGP_C3HHeJ_P0072819 Gak protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100689.1 MGP_C3HHeJ_G0038883.1 mouse_genomes_project 5 17746979 17747107 - Gm25761 snoRNA snoRNA MGP_C3HHeJ_T0001748.1 MGP_C3HHeJ_G0001672.1 mouse_genomes_project 5 119559309 119561989 + TEC TEC MGP_C3HHeJ_T0001819.1 MGP_C3HHeJ_G0001742.1 mouse_genomes_project 5 134981563 134982696 - TEC TEC MGP_C3HHeJ_T0004586.1 MGP_C3HHeJ_G0003966.1 mouse_genomes_project 5 30255417 30260305 - Gm17130 antisense antisense MGP_C3HHeJ_T0072800.1 MGP_C3HHeJ_G0029555.1 mouse_genomes_project 5 110248098 110277138 + MGP_C3HHeJ_P0072800 Pcgf3 protein_coding protein_coding MGP_C3HHeJ_T0072801.1 MGP_C3HHeJ_G0029555.1 mouse_genomes_project 5 110248098 110295456 + MGP_C3HHeJ_P0072801 Pcgf3 protein_coding protein_coding MGP_C3HHeJ_T0072802.1 MGP_C3HHeJ_G0029555.1 mouse_genomes_project 5 110248179 110274349 + MGP_C3HHeJ_P0072802 Pcgf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072803.1 MGP_C3HHeJ_G0029555.1 mouse_genomes_project 5 110260777 110265400 + Pcgf3 protein_coding retained_intron MGP_C3HHeJ_T0072804.1 MGP_C3HHeJ_G0029555.1 mouse_genomes_project 5 110274397 110282326 + Pcgf3 protein_coding retained_intron MGP_C3HHeJ_T0011498.1 MGP_C3HHeJ_G0009631.1 mouse_genomes_project 5 37883929 37884175 + Gm25505 misc_RNA misc_RNA MGP_C3HHeJ_T0014703.1 MGP_C3HHeJ_G0012807.1 mouse_genomes_project 5 18814147 18815543 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011512.1 MGP_C3HHeJ_G0009645.1 mouse_genomes_project 5 114261779 114261853 - Gm27882 misc_RNA misc_RNA MGP_C3HHeJ_T0072986.1 MGP_C3HHeJ_G0029591.1 mouse_genomes_project 5 112819431 112831691 - MGP_C3HHeJ_P0072986 Hscb protein_coding protein_coding MGP_C3HHeJ_T0072987.1 MGP_C3HHeJ_G0029591.1 mouse_genomes_project 5 112819441 112831489 - MGP_C3HHeJ_P0072987 Hscb protein_coding protein_coding MGP_C3HHeJ_T0072988.1 MGP_C3HHeJ_G0029591.1 mouse_genomes_project 5 112819441 112828439 - MGP_C3HHeJ_P0072988 Hscb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072989.1 MGP_C3HHeJ_G0029591.1 mouse_genomes_project 5 112819442 112826315 - Hscb protein_coding retained_intron MGP_C3HHeJ_T0015038.1 MGP_C3HHeJ_G0013142.1 mouse_genomes_project 5 155364938 155367340 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099427.1 MGP_C3HHeJ_G0037621.1 mouse_genomes_project 5 27587182 27587289 - Gm24538 snRNA snRNA MGP_C3HHeJ_T0001666.1 MGP_C3HHeJ_G0001590.1 mouse_genomes_project 5 75768711 75771034 + TEC TEC MGP_C3HHeJ_T0004552.1 MGP_C3HHeJ_G0003939.1 mouse_genomes_project 5 335507 342789 - Gm17590 antisense antisense MGP_C3HHeJ_T0004553.1 MGP_C3HHeJ_G0003939.1 mouse_genomes_project 5 335717 335825 - Gm17590 antisense antisense MGP_C3HHeJ_T0069755.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5198906 5497351 - MGP_C3HHeJ_P0069755 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069756.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5198906 5497351 - MGP_C3HHeJ_P0069756 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069757.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5198906 5497351 - MGP_C3HHeJ_P0069757 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069758.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5198906 5497450 - MGP_C3HHeJ_P0069758 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069759.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5198906 5497450 - MGP_C3HHeJ_P0069759 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069760.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5204393 5247529 - MGP_C3HHeJ_P0069760 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069761.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5205237 5243039 - MGP_C3HHeJ_P0069761 Adam22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069762.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5205237 5243039 - MGP_C3HHeJ_P0069762 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069763.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069763 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069764.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069764 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069765.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069765 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069766.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069766 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069767.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069767 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069768.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069768 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069769.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069769 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069770.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069770 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069771.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069771 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069772.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5208562 5243039 - MGP_C3HHeJ_P0069772 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069773.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5214881 5217184 - Adam22 protein_coding retained_intron MGP_C3HHeJ_T0069774.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5219203 5497446 - MGP_C3HHeJ_P0069774 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069775.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5219266 5243039 - MGP_C3HHeJ_P0069775 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069776.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5271363 5497450 - MGP_C3HHeJ_P0069776 Adam22 protein_coding protein_coding MGP_C3HHeJ_T0069777.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5354175 5497503 - Adam22 protein_coding processed_transcript MGP_C3HHeJ_T0069778.1 MGP_C3HHeJ_G0028982.1 mouse_genomes_project 5 5496311 5497529 - Adam22 protein_coding retained_intron MGP_C3HHeJ_T0001432.1 MGP_C3HHeJ_G0001362.1 mouse_genomes_project 5 16796626 16799807 - TEC TEC MGP_C3HHeJ_T0001810.1 MGP_C3HHeJ_G0001733.1 mouse_genomes_project 5 134109774 134113164 - TEC TEC MGP_C3HHeJ_T0001633.1 MGP_C3HHeJ_G0001558.1 mouse_genomes_project 5 67512529 67513829 - TEC TEC MGP_C3HHeJ_T0100728.1 MGP_C3HHeJ_G0038922.1 mouse_genomes_project 5 123970923 123971057 + Gm26205 snoRNA snoRNA MGP_C3HHeJ_T0001773.1 MGP_C3HHeJ_G0001697.1 mouse_genomes_project 5 125416091 125418291 - TEC TEC MGP_C3HHeJ_T0001750.1 MGP_C3HHeJ_G0001674.1 mouse_genomes_project 5 120335250 120335357 + TEC TEC MGP_C3HHeJ_T0099469.1 MGP_C3HHeJ_G0037663.1 mouse_genomes_project 5 106411393 106411500 + Gm24097 snRNA snRNA MGP_C3HHeJ_T0014969.1 MGP_C3HHeJ_G0013073.1 mouse_genomes_project 5 126032063 126032521 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014779.1 MGP_C3HHeJ_G0012883.1 mouse_genomes_project 5 41110832 41111266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001637.1 MGP_C3HHeJ_G0001562.1 mouse_genomes_project 5 68882734 68884311 - TEC TEC MGP_C3HHeJ_T0015016.1 MGP_C3HHeJ_G0013120.1 mouse_genomes_project 5 149908176 149908341 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001629.1 MGP_C3HHeJ_G0001554.1 mouse_genomes_project 5 67260781 67261391 - TEC TEC MGP_C3HHeJ_T0074577.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138824520 138831405 + MGP_C3HHeJ_P0074577 Nsun5 protein_coding protein_coding MGP_C3HHeJ_T0074578.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138824537 138825971 + Nsun5 protein_coding processed_transcript MGP_C3HHeJ_T0074579.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138824542 138828811 + MGP_C3HHeJ_P0074579 Nsun5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074580.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138824558 138828672 + MGP_C3HHeJ_P0074580 Nsun5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074581.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138825144 138827109 + Nsun5 protein_coding retained_intron MGP_C3HHeJ_T0074582.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138825494 138828691 + Nsun5 protein_coding retained_intron MGP_C3HHeJ_T0074583.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138825626 138826376 + Nsun5 protein_coding retained_intron MGP_C3HHeJ_T0074584.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138828248 138831412 + Nsun5 protein_coding retained_intron MGP_C3HHeJ_T0074585.1 MGP_C3HHeJ_G0029875.1 mouse_genomes_project 5 138828785 138830750 + Nsun5 protein_coding retained_intron MGP_C3HHeJ_T0017909.1 MGP_C3HHeJ_G0015354.1 mouse_genomes_project 5 29844096 29950688 + Gm43809 processed_transcript processed_transcript MGP_C3HHeJ_T0017910.1 MGP_C3HHeJ_G0015354.1 mouse_genomes_project 5 29860942 29950668 + Gm43809 processed_transcript processed_transcript MGP_C3HHeJ_T0001544.1 MGP_C3HHeJ_G0001470.1 mouse_genomes_project 5 48129930 48132416 - TEC TEC MGP_C3HHeJ_T0004598.1 MGP_C3HHeJ_G0003978.1 mouse_genomes_project 5 35341086 35344371 - Ppp2r2cos antisense antisense MGP_C3HHeJ_T0073875.1 MGP_C3HHeJ_G0029755.1 mouse_genomes_project 5 125998951 126010750 - MGP_C3HHeJ_P0073875 Morn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073876.1 MGP_C3HHeJ_G0029755.1 mouse_genomes_project 5 125998971 126000906 - MGP_C3HHeJ_P0073876 Morn3 protein_coding protein_coding MGP_C3HHeJ_T0073877.1 MGP_C3HHeJ_G0029755.1 mouse_genomes_project 5 125999044 126000914 - MGP_C3HHeJ_P0073877 Morn3 protein_coding protein_coding MGP_C3HHeJ_T0073878.1 MGP_C3HHeJ_G0029755.1 mouse_genomes_project 5 126000484 126010509 - MGP_C3HHeJ_P0073878 Morn3 protein_coding protein_coding MGP_C3HHeJ_T0073879.1 MGP_C3HHeJ_G0029755.1 mouse_genomes_project 5 126000506 126010739 - MGP_C3HHeJ_P0073879 Morn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071620.1 MGP_C3HHeJ_G0029295.1 mouse_genomes_project 5 67033866 67070310 - MGP_C3HHeJ_P0071620 Bend4 protein_coding protein_coding MGP_C3HHeJ_T0071621.1 MGP_C3HHeJ_G0029295.1 mouse_genomes_project 5 67033867 67070128 - MGP_C3HHeJ_P0071621 Bend4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071622.1 MGP_C3HHeJ_G0029295.1 mouse_genomes_project 5 67033867 67070128 - MGP_C3HHeJ_P0071622 Bend4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071623.1 MGP_C3HHeJ_G0029295.1 mouse_genomes_project 5 67033867 67069841 - MGP_C3HHeJ_P0071623 Bend4 protein_coding protein_coding MGP_C3HHeJ_T0071624.1 MGP_C3HHeJ_G0029295.1 mouse_genomes_project 5 67033867 67070821 - MGP_C3HHeJ_P0071624 Bend4 protein_coding protein_coding MGP_C3HHeJ_T0014771.1 MGP_C3HHeJ_G0012875.1 mouse_genomes_project 5 37013841 37014045 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098488.1 MGP_C3HHeJ_G0036693.1 mouse_genomes_project 5 21544141 21544949 - Gm43566 sense_intronic sense_intronic MGP_C3HHeJ_T0001763.1 MGP_C3HHeJ_G0001687.1 mouse_genomes_project 5 123716532 123718833 - TEC TEC MGP_C3HHeJ_T0004633.1 MGP_C3HHeJ_G0004004.1 mouse_genomes_project 5 66630323 66632655 - Gm15948 antisense antisense MGP_C3HHeJ_T0008300.1 MGP_C3HHeJ_G0006731.1 mouse_genomes_project 5 130144162 130162188 + 4933438B17Rik lincRNA lincRNA MGP_C3HHeJ_T0008301.1 MGP_C3HHeJ_G0006731.1 mouse_genomes_project 5 130147568 130205755 + 4933438B17Rik lincRNA lincRNA MGP_C3HHeJ_T0008302.1 MGP_C3HHeJ_G0006731.1 mouse_genomes_project 5 130147575 130162043 + 4933438B17Rik lincRNA lincRNA MGP_C3HHeJ_T0008205.1 MGP_C3HHeJ_G0006670.1 mouse_genomes_project 5 113809164 113823219 + Gm42487 lincRNA lincRNA MGP_C3HHeJ_T0008206.1 MGP_C3HHeJ_G0006670.1 mouse_genomes_project 5 113810994 113823136 + Gm42487 lincRNA lincRNA MGP_C3HHeJ_T0074620.1 MGP_C3HHeJ_G0029883.1 mouse_genomes_project 5 139232194 139267084 - MGP_C3HHeJ_P0074620 Styxl1 protein_coding protein_coding MGP_C3HHeJ_T0074621.1 MGP_C3HHeJ_G0029883.1 mouse_genomes_project 5 139232224 139259157 - MGP_C3HHeJ_P0074621 Styxl1 protein_coding protein_coding MGP_C3HHeJ_T0074622.1 MGP_C3HHeJ_G0029883.1 mouse_genomes_project 5 139246068 139267162 - MGP_C3HHeJ_P0074622 Styxl1 protein_coding protein_coding MGP_C3HHeJ_T0074325.1 MGP_C3HHeJ_G0029833.1 mouse_genomes_project 5 133221642 133252118 + MGP_C3HHeJ_P0074325 Crcp protein_coding protein_coding MGP_C3HHeJ_T0074326.1 MGP_C3HHeJ_G0029833.1 mouse_genomes_project 5 133221659 133252161 + Crcp protein_coding processed_transcript MGP_C3HHeJ_T0074327.1 MGP_C3HHeJ_G0029833.1 mouse_genomes_project 5 133221674 133251979 + Crcp protein_coding processed_transcript MGP_C3HHeJ_T0074328.1 MGP_C3HHeJ_G0029833.1 mouse_genomes_project 5 133221685 133252845 + MGP_C3HHeJ_P0074328 Crcp protein_coding protein_coding MGP_C3HHeJ_T0074329.1 MGP_C3HHeJ_G0029833.1 mouse_genomes_project 5 133234293 133252457 + Crcp protein_coding processed_transcript MGP_C3HHeJ_T0072238.1 MGP_C3HHeJ_G0029437.1 mouse_genomes_project 5 92262372 92376420 + MGP_C3HHeJ_P0072238 Parm1 protein_coding protein_coding MGP_C3HHeJ_T0072498.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102045667 102083386 - MGP_C3HHeJ_P0072498 Helq protein_coding protein_coding MGP_C3HHeJ_T0072499.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102045673 102048961 - Helq protein_coding retained_intron MGP_C3HHeJ_T0072500.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102045969 102083256 - MGP_C3HHeJ_P0072500 Helq protein_coding protein_coding MGP_C3HHeJ_T0072501.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102045978 102050336 - Helq protein_coding retained_intron MGP_C3HHeJ_T0072502.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102050259 102057558 - MGP_C3HHeJ_P0072502 Helq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072503.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102055069 102057642 - Helq protein_coding retained_intron MGP_C3HHeJ_T0072504.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102061906 102066503 - Helq protein_coding retained_intron MGP_C3HHeJ_T0072505.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102066601 102077515 - Helq protein_coding processed_transcript MGP_C3HHeJ_T0072506.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102066682 102083365 - MGP_C3HHeJ_P0072506 Helq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072507.1 MGP_C3HHeJ_G0029490.1 mouse_genomes_project 5 102076560 102077841 - Helq protein_coding retained_intron MGP_C3HHeJ_T0099466.1 MGP_C3HHeJ_G0037660.1 mouse_genomes_project 5 101792589 101792749 - Gm23173 snRNA snRNA MGP_C3HHeJ_T0071603.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911402 66936530 + MGP_C3HHeJ_P0071603 Tmem33 protein_coding protein_coding MGP_C3HHeJ_T0071604.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911488 66915453 + MGP_C3HHeJ_P0071604 Tmem33 protein_coding protein_coding MGP_C3HHeJ_T0071605.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911533 66919394 + MGP_C3HHeJ_P0071605 Tmem33 protein_coding protein_coding MGP_C3HHeJ_T0071606.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911533 66931728 + MGP_C3HHeJ_P0071606 Tmem33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071607.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911534 66936530 + MGP_C3HHeJ_P0071607 Tmem33 protein_coding protein_coding MGP_C3HHeJ_T0071608.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911541 66915120 + MGP_C3HHeJ_P0071608 Tmem33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071609.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911591 66913914 + Tmem33 protein_coding retained_intron MGP_C3HHeJ_T0071610.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911642 66936530 + MGP_C3HHeJ_P0071610 Tmem33 protein_coding protein_coding MGP_C3HHeJ_T0071611.1 MGP_C3HHeJ_G0029293.1 mouse_genomes_project 5 66911733 66919832 + Tmem33 protein_coding retained_intron MGP_C3HHeJ_T0072537.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 103802440 104239840 + MGP_C3HHeJ_P0072537 Arhgap24 protein_coding protein_coding MGP_C3HHeJ_T0072538.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 103802440 104239839 + MGP_C3HHeJ_P0072538 Arhgap24 protein_coding protein_coding MGP_C3HHeJ_T0072539.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 103802579 103998151 + Arhgap24 protein_coding retained_intron MGP_C3HHeJ_T0072540.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 103994397 104239840 + MGP_C3HHeJ_P0072540 Arhgap24 protein_coding protein_coding MGP_C3HHeJ_T0072541.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 104055496 104239840 + MGP_C3HHeJ_P0072541 Arhgap24 protein_coding protein_coding MGP_C3HHeJ_T0072542.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 104107946 104239841 + MGP_C3HHeJ_P0072542 Arhgap24 protein_coding protein_coding MGP_C3HHeJ_T0072543.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 104149779 104217813 + Arhgap24 protein_coding processed_transcript MGP_C3HHeJ_T0072544.1 MGP_C3HHeJ_G0029497.1 mouse_genomes_project 5 104185488 104239840 + MGP_C3HHeJ_P0072544 Arhgap24 protein_coding protein_coding MGP_C3HHeJ_T0099496.1 MGP_C3HHeJ_G0037690.1 mouse_genomes_project 5 155407969 155408110 - Gm25284 snRNA snRNA MGP_C3HHeJ_T0099428.1 MGP_C3HHeJ_G0037622.1 mouse_genomes_project 5 28667873 28667980 - Gm25666 snRNA snRNA MGP_C3HHeJ_T0098500.1 MGP_C3HHeJ_G0036705.1 mouse_genomes_project 5 112158975 112159683 + Gm43138 sense_intronic sense_intronic MGP_C3HHeJ_T0014862.1 MGP_C3HHeJ_G0012966.1 mouse_genomes_project 5 83718475 83719343 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098493.1 MGP_C3HHeJ_G0036698.1 mouse_genomes_project 5 43342989 43348940 - Gm3364 sense_intronic sense_intronic MGP_C3HHeJ_T0074356.1 MGP_C3HHeJ_G0029839.1 mouse_genomes_project 5 133458301 133490279 + Tyw1 protein_coding retained_intron MGP_C3HHeJ_T0074357.1 MGP_C3HHeJ_G0029839.1 mouse_genomes_project 5 133461083 133482640 + MGP_C3HHeJ_P0074357 Tyw1 protein_coding protein_coding MGP_C3HHeJ_T0074358.1 MGP_C3HHeJ_G0029839.1 mouse_genomes_project 5 133461083 133547562 + MGP_C3HHeJ_P0074358 Tyw1 protein_coding protein_coding MGP_C3HHeJ_T0074359.1 MGP_C3HHeJ_G0029839.1 mouse_genomes_project 5 133462978 133474289 + MGP_C3HHeJ_P0074359 Tyw1 protein_coding protein_coding MGP_C3HHeJ_T0101223.1 MGP_C3HHeJ_G0039356.1 mouse_genomes_project 5 65778162 65778541 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0072233.1 MGP_C3HHeJ_G0029435.1 mouse_genomes_project 5 91874661 91883482 + MGP_C3HHeJ_P0072233 Areg protein_coding protein_coding MGP_C3HHeJ_T0010633.1 MGP_C3HHeJ_G0008766.1 mouse_genomes_project 5 137807445 137807544 + Gm26340 miRNA miRNA MGP_C3HHeJ_T0010621.1 MGP_C3HHeJ_G0008754.1 mouse_genomes_project 5 116615297 116615369 + Mir7027 miRNA miRNA MGP_C3HHeJ_T0072220.1 MGP_C3HHeJ_G0029430.1 mouse_genomes_project 5 91641774 91643649 + MGP_C3HHeJ_P0072220 Cxcl1 protein_coding protein_coding MGP_C3HHeJ_T0072221.1 MGP_C3HHeJ_G0029430.1 mouse_genomes_project 5 91641776 91643647 + Cxcl1 protein_coding retained_intron MGP_C3HHeJ_T0010594.1 MGP_C3HHeJ_G0008727.1 mouse_genomes_project 5 50205443 50205530 - Gm44377 miRNA miRNA MGP_C3HHeJ_T0010609.1 MGP_C3HHeJ_G0008742.1 mouse_genomes_project 5 91544385 91544455 - Gm24322 miRNA miRNA MGP_C3HHeJ_T0014738.1 MGP_C3HHeJ_G0012842.1 mouse_genomes_project 5 24886630 24887036 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071502.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65169130 65175931 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071503.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65171179 65184766 - MGP_C3HHeJ_P0071503 Pds5a protein_coding protein_coding MGP_C3HHeJ_T0071504.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65174348 65271621 - MGP_C3HHeJ_P0071504 Pds5a protein_coding protein_coding MGP_C3HHeJ_T0071505.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65179574 65186714 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071506.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65187035 65215405 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071507.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65187050 65193523 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071508.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65188218 65194541 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071509.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65188696 65194972 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071510.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65202667 65203842 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071511.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65207065 65210090 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071512.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65210947 65272065 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071513.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65219060 65220210 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0071514.1 MGP_C3HHeJ_G0029282.1 mouse_genomes_project 5 65231158 65270657 - Pds5a protein_coding retained_intron MGP_C3HHeJ_T0073746.1 MGP_C3HHeJ_G0029737.1 mouse_genomes_project 5 125111900 125138797 + MGP_C3HHeJ_P0073746 Hvcn1 protein_coding protein_coding MGP_C3HHeJ_T0073747.1 MGP_C3HHeJ_G0029737.1 mouse_genomes_project 5 125114825 125148425 + MGP_C3HHeJ_P0073747 Hvcn1 protein_coding protein_coding MGP_C3HHeJ_T0073748.1 MGP_C3HHeJ_G0029737.1 mouse_genomes_project 5 125115005 125144643 + MGP_C3HHeJ_P0073748 Hvcn1 protein_coding protein_coding MGP_C3HHeJ_T0073749.1 MGP_C3HHeJ_G0029737.1 mouse_genomes_project 5 125115209 125143041 + MGP_C3HHeJ_P0073749 Hvcn1 protein_coding protein_coding MGP_C3HHeJ_T0073750.1 MGP_C3HHeJ_G0029737.1 mouse_genomes_project 5 125115230 125148425 + MGP_C3HHeJ_P0073750 Hvcn1 protein_coding protein_coding MGP_C3HHeJ_T0010639.1 MGP_C3HHeJ_G0008772.1 mouse_genomes_project 5 139918430 139918518 - Mir721 miRNA miRNA MGP_C3HHeJ_T0070505.1 MGP_C3HHeJ_G0029116.1 mouse_genomes_project 5 29399373 29418705 - MGP_C3HHeJ_P0070505 Ppm1g protein_coding protein_coding MGP_C3HHeJ_T0070506.1 MGP_C3HHeJ_G0029116.1 mouse_genomes_project 5 29399377 29418827 - MGP_C3HHeJ_P0070506 Ppm1g protein_coding protein_coding MGP_C3HHeJ_T0070507.1 MGP_C3HHeJ_G0029116.1 mouse_genomes_project 5 29399811 29401793 - Ppm1g protein_coding retained_intron MGP_C3HHeJ_T0070509.1 MGP_C3HHeJ_G0029116.1 mouse_genomes_project 5 29401801 29404375 - MGP_C3HHeJ_P0070509 Ppm1g protein_coding protein_coding MGP_C3HHeJ_T0070510.1 MGP_C3HHeJ_G0029116.1 mouse_genomes_project 5 29416920 29418705 - Ppm1g protein_coding retained_intron MGP_C3HHeJ_T0008219.1 MGP_C3HHeJ_G0006677.1 mouse_genomes_project 5 114642520 114649580 - 1700034G24Rik lincRNA lincRNA MGP_C3HHeJ_T0008220.1 MGP_C3HHeJ_G0006677.1 mouse_genomes_project 5 114642609 114649580 - 1700034G24Rik lincRNA lincRNA MGP_C3HHeJ_T0070385.1 MGP_C3HHeJ_G0029098.1 mouse_genomes_project 5 29084881 29092768 + MGP_C3HHeJ_P0070385 Emilin1 protein_coding protein_coding MGP_C3HHeJ_T0070386.1 MGP_C3HHeJ_G0029098.1 mouse_genomes_project 5 29085218 29092357 + Emilin1 protein_coding retained_intron MGP_C3HHeJ_T0070387.1 MGP_C3HHeJ_G0029098.1 mouse_genomes_project 5 29091412 29092541 + Emilin1 protein_coding retained_intron MGP_C3HHeJ_T0004772.1 MGP_C3HHeJ_G0004101.1 mouse_genomes_project 5 131922510 131930823 + Gm42875 antisense antisense MGP_C3HHeJ_T0098520.1 MGP_C3HHeJ_G0036721.1 mouse_genomes_project 5 155626003 155627784 + Gm43807 sense_intronic sense_intronic MGP_C3HHeJ_T0014787.1 MGP_C3HHeJ_G0012891.1 mouse_genomes_project 5 46858445 46859840 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075189.1 MGP_C3HHeJ_G0029997.1 mouse_genomes_project 5 144534242 144556384 + MGP_C3HHeJ_P0075189 Chst12 protein_coding protein_coding MGP_C3HHeJ_T0075190.1 MGP_C3HHeJ_G0029997.1 mouse_genomes_project 5 144534267 144554813 + MGP_C3HHeJ_P0075190 Chst12 protein_coding protein_coding MGP_C3HHeJ_T0004758.1 MGP_C3HHeJ_G0004092.1 mouse_genomes_project 5 127227386 127228307 + Pitpnm2os2 antisense antisense MGP_C3HHeJ_T0004759.1 MGP_C3HHeJ_G0004092.1 mouse_genomes_project 5 127227439 127232841 + Pitpnm2os2 antisense antisense MGP_C3HHeJ_T0004760.1 MGP_C3HHeJ_G0004092.1 mouse_genomes_project 5 127228121 127230594 + Pitpnm2os2 antisense antisense MGP_C3HHeJ_T0069682.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1791667 2298633 - MGP_C3HHeJ_P0069682 Cdk14 protein_coding protein_coding MGP_C3HHeJ_T0069683.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1791667 2428650 - MGP_C3HHeJ_P0069683 Cdk14 protein_coding protein_coding MGP_C3HHeJ_T0069684.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1794106 2297876 - MGP_C3HHeJ_P0069684 Cdk14 protein_coding protein_coding MGP_C3HHeJ_T0069685.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1794961 2298730 - MGP_C3HHeJ_P0069685 Cdk14 protein_coding protein_coding MGP_C3HHeJ_T0069686.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1885879 1889298 - Cdk14 protein_coding retained_intron MGP_C3HHeJ_T0069687.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1922329 2298547 - Cdk14 protein_coding retained_intron MGP_C3HHeJ_T0069688.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 1934570 2042559 - Cdk14 protein_coding processed_transcript MGP_C3HHeJ_T0069689.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2012637 2428677 - Cdk14 protein_coding retained_intron MGP_C3HHeJ_T0069690.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2109532 2428704 - Cdk14 protein_coding retained_intron MGP_C3HHeJ_T0069691.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2149634 2428646 - Cdk14 protein_coding retained_intron MGP_C3HHeJ_T0069692.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2204787 2215512 - Cdk14 protein_coding processed_transcript MGP_C3HHeJ_T0069693.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2256711 2298857 - MGP_C3HHeJ_P0069693 Cdk14 protein_coding protein_coding MGP_C3HHeJ_T0069694.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2256712 2464061 - MGP_C3HHeJ_P0069694 Cdk14 protein_coding protein_coding MGP_C3HHeJ_T0069695.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2281756 2298868 - Cdk14 protein_coding processed_transcript MGP_C3HHeJ_T0069696.1 MGP_C3HHeJ_G0028971.1 mouse_genomes_project 5 2334532 2428646 - Cdk14 protein_coding processed_transcript MGP_C3HHeJ_T0001564.1 MGP_C3HHeJ_G0001490.1 mouse_genomes_project 5 53048743 53050514 + TEC TEC MGP_C3HHeJ_T0074515.1 MGP_C3HHeJ_G0029863.1 mouse_genomes_project 5 138434606 138435253 + MGP_C3HHeJ_P0074515 Abhd11 protein_coding protein_coding MGP_C3HHeJ_T0074516.1 MGP_C3HHeJ_G0029863.1 mouse_genomes_project 5 138434649 138437364 + MGP_C3HHeJ_P0074516 Abhd11 protein_coding protein_coding MGP_C3HHeJ_T0074517.1 MGP_C3HHeJ_G0029863.1 mouse_genomes_project 5 138434884 138437364 + MGP_C3HHeJ_P0074517 Abhd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074518.1 MGP_C3HHeJ_G0029863.1 mouse_genomes_project 5 138434899 138437364 + MGP_C3HHeJ_P0074518 Abhd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074519.1 MGP_C3HHeJ_G0029863.1 mouse_genomes_project 5 138434905 138437370 + MGP_C3HHeJ_P0074519 Abhd11 protein_coding protein_coding MGP_C3HHeJ_T0074520.1 MGP_C3HHeJ_G0029863.1 mouse_genomes_project 5 138435166 138437170 + MGP_C3HHeJ_P0074520 Abhd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008056.1 MGP_C3HHeJ_G0006562.1 mouse_genomes_project 5 57725601 57736317 - 4930459L07Rik lincRNA lincRNA MGP_C3HHeJ_T0072410.1 MGP_C3HHeJ_G0029473.1 mouse_genomes_project 5 99519285 100001641 + MGP_C3HHeJ_P0072410 1700007G11Rik protein_coding protein_coding MGP_C3HHeJ_T0072411.1 MGP_C3HHeJ_G0029473.1 mouse_genomes_project 5 99519332 99534705 + 1700007G11Rik protein_coding processed_transcript MGP_C3HHeJ_T0072412.1 MGP_C3HHeJ_G0029473.1 mouse_genomes_project 5 99519337 99535100 + 1700007G11Rik protein_coding processed_transcript MGP_C3HHeJ_T0072413.1 MGP_C3HHeJ_G0029473.1 mouse_genomes_project 5 99519351 100001669 + MGP_C3HHeJ_P0072413 1700007G11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008254.1 MGP_C3HHeJ_G0006703.1 mouse_genomes_project 5 122073114 122082618 - Gm31314 lincRNA lincRNA MGP_C3HHeJ_T0014978.1 MGP_C3HHeJ_G0013082.1 mouse_genomes_project 5 137824182 137824392 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075102.1 MGP_C3HHeJ_G0029976.1 mouse_genomes_project 5 143200733 143235922 - Adap1 protein_coding processed_transcript MGP_C3HHeJ_T0075103.1 MGP_C3HHeJ_G0029976.1 mouse_genomes_project 5 143200733 143256095 - MGP_C3HHeJ_P0075103 Adap1 protein_coding protein_coding MGP_C3HHeJ_T0075104.1 MGP_C3HHeJ_G0029976.1 mouse_genomes_project 5 143201633 143232769 - Adap1 protein_coding processed_transcript MGP_C3HHeJ_T0075105.1 MGP_C3HHeJ_G0029976.1 mouse_genomes_project 5 143201715 143235894 - Adap1 protein_coding processed_transcript MGP_C3HHeJ_T0075106.1 MGP_C3HHeJ_G0029976.1 mouse_genomes_project 5 143201787 143203499 - Adap1 protein_coding retained_intron MGP_C3HHeJ_T0075107.1 MGP_C3HHeJ_G0029976.1 mouse_genomes_project 5 143209582 143238282 - Adap1 protein_coding retained_intron MGP_C3HHeJ_T0074725.1 MGP_C3HHeJ_G0029901.1 mouse_genomes_project 5 140249469 140257128 + MGP_C3HHeJ_P0074725 Myl10 protein_coding protein_coding MGP_C3HHeJ_T0074726.1 MGP_C3HHeJ_G0029901.1 mouse_genomes_project 5 140249501 140257026 + MGP_C3HHeJ_P0074726 Myl10 protein_coding protein_coding MGP_C3HHeJ_T0074727.1 MGP_C3HHeJ_G0029901.1 mouse_genomes_project 5 140250028 140257128 + MGP_C3HHeJ_P0074727 Myl10 protein_coding protein_coding MGP_C3HHeJ_T0074728.1 MGP_C3HHeJ_G0029901.1 mouse_genomes_project 5 140250500 140257128 + MGP_C3HHeJ_P0074728 Myl10 protein_coding protein_coding MGP_C3HHeJ_T0074729.1 MGP_C3HHeJ_G0029901.1 mouse_genomes_project 5 140253979 140257128 + Myl10 protein_coding retained_intron MGP_C3HHeJ_T0074730.1 MGP_C3HHeJ_G0029901.1 mouse_genomes_project 5 140254030 140257126 + Myl10 protein_coding retained_intron MGP_C3HHeJ_T0008141.1 MGP_C3HHeJ_G0006630.1 mouse_genomes_project 5 101181227 101195525 + lincRNA lincRNA MGP_C3HHeJ_T0099459.1 MGP_C3HHeJ_G0037653.1 mouse_genomes_project 5 87454531 87454637 - Gm24121 snRNA snRNA MGP_C3HHeJ_T0008027.1 MGP_C3HHeJ_G0006536.1 mouse_genomes_project 5 37845225 37851365 + Gm43454 lincRNA lincRNA MGP_C3HHeJ_T0073062.1 MGP_C3HHeJ_G0029609.1 mouse_genomes_project 5 115137122 115151353 - MGP_C3HHeJ_P0073062 Crybb2 protein_coding protein_coding MGP_C3HHeJ_T0073063.1 MGP_C3HHeJ_G0029609.1 mouse_genomes_project 5 115137129 115148685 - MGP_C3HHeJ_P0073063 Crybb2 protein_coding protein_coding MGP_C3HHeJ_T0073064.1 MGP_C3HHeJ_G0029609.1 mouse_genomes_project 5 115143055 115148376 - Crybb2 protein_coding processed_transcript MGP_C3HHeJ_T0073065.1 MGP_C3HHeJ_G0029609.1 mouse_genomes_project 5 115147972 115148690 - Crybb2 protein_coding processed_transcript MGP_C3HHeJ_T0073066.1 MGP_C3HHeJ_G0029609.1 mouse_genomes_project 5 115148610 115149413 - Crybb2 protein_coding processed_transcript MGP_C3HHeJ_T0014920.1 MGP_C3HHeJ_G0013024.1 mouse_genomes_project 5 108399439 108400087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070323.1 MGP_C3HHeJ_G0029088.1 mouse_genomes_project 5 28614135 28630277 + MGP_C3HHeJ_P0070323 1700001C02Rik protein_coding protein_coding MGP_C3HHeJ_T0070324.1 MGP_C3HHeJ_G0029088.1 mouse_genomes_project 5 28614143 28633417 + MGP_C3HHeJ_P0070324 1700001C02Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070325.1 MGP_C3HHeJ_G0029088.1 mouse_genomes_project 5 28614147 28633461 + MGP_C3HHeJ_P0070325 1700001C02Rik protein_coding protein_coding MGP_C3HHeJ_T0070326.1 MGP_C3HHeJ_G0029088.1 mouse_genomes_project 5 28614172 28633440 + MGP_C3HHeJ_P0070326 1700001C02Rik protein_coding protein_coding MGP_C3HHeJ_T0014739.1 MGP_C3HHeJ_G0012843.1 mouse_genomes_project 5 24920117 24920252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099475.1 MGP_C3HHeJ_G0037669.1 mouse_genomes_project 5 115122641 115122750 + Gm22740 snRNA snRNA MGP_C3HHeJ_T0010654.1 MGP_C3HHeJ_G0008787.1 mouse_genomes_project 5 149126407 149126492 - Mir7039 miRNA miRNA MGP_C3HHeJ_T0014676.1 MGP_C3HHeJ_G0012780.1 mouse_genomes_project 5 6133888 6134083 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007967.1 MGP_C3HHeJ_G0006501.1 mouse_genomes_project 5 20311972 20323038 + lincRNA lincRNA MGP_C3HHeJ_T0007968.1 MGP_C3HHeJ_G0006501.1 mouse_genomes_project 5 20311979 20591213 + lincRNA lincRNA MGP_C3HHeJ_T0007969.1 MGP_C3HHeJ_G0006501.1 mouse_genomes_project 5 20315421 20322231 + lincRNA lincRNA MGP_C3HHeJ_T0001399.1 MGP_C3HHeJ_G0001329.1 mouse_genomes_project 5 624261 628407 - TEC TEC MGP_C3HHeJ_T0075344.1 MGP_C3HHeJ_G0030031.1 mouse_genomes_project 5 147777510 147780699 + MGP_C3HHeJ_P0075344 protein_coding protein_coding MGP_C3HHeJ_T0075345.1 MGP_C3HHeJ_G0030031.1 mouse_genomes_project 5 147777526 147779640 + protein_coding retained_intron MGP_C3HHeJ_T0075346.1 MGP_C3HHeJ_G0030031.1 mouse_genomes_project 5 147777804 147780694 + protein_coding processed_transcript MGP_C3HHeJ_T0073624.1 MGP_C3HHeJ_G0029721.1 mouse_genomes_project 5 124210024 124233917 - MGP_C3HHeJ_P0073624 Erp29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073627.1 MGP_C3HHeJ_G0029721.1 mouse_genomes_project 5 124222250 124233936 - MGP_C3HHeJ_P0073627 Erp29 protein_coding protein_coding MGP_C3HHeJ_T0073628.1 MGP_C3HHeJ_G0029721.1 mouse_genomes_project 5 124226183 124233926 - MGP_C3HHeJ_P0073628 Erp29 protein_coding protein_coding MGP_C3HHeJ_T0073629.1 MGP_C3HHeJ_G0029721.1 mouse_genomes_project 5 124226668 124233778 - MGP_C3HHeJ_P0073629 Erp29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073195.1 MGP_C3HHeJ_G0029633.1 mouse_genomes_project 5 116589243 116632004 + MGP_C3HHeJ_P0073195 Ube3b protein_coding protein_coding MGP_C3HHeJ_T0073196.1 MGP_C3HHeJ_G0029633.1 mouse_genomes_project 5 116589462 116632003 + MGP_C3HHeJ_P0073196 Ube3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073197.1 MGP_C3HHeJ_G0029633.1 mouse_genomes_project 5 116589469 116602971 + MGP_C3HHeJ_P0073197 Ube3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073198.1 MGP_C3HHeJ_G0029633.1 mouse_genomes_project 5 116609613 116632003 + MGP_C3HHeJ_P0073198 Ube3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073199.1 MGP_C3HHeJ_G0029633.1 mouse_genomes_project 5 116613554 116621965 + Ube3b protein_coding processed_transcript MGP_C3HHeJ_T0001617.1 MGP_C3HHeJ_G0001542.1 mouse_genomes_project 5 65962658 65963991 - TEC TEC MGP_C3HHeJ_T0075077.1 MGP_C3HHeJ_G0029973.1 mouse_genomes_project 5 143074008 143109908 + MGP_C3HHeJ_P0075077 Dnaaf5 protein_coding protein_coding MGP_C3HHeJ_T0075078.1 MGP_C3HHeJ_G0029973.1 mouse_genomes_project 5 143091565 143102265 + Dnaaf5 protein_coding processed_transcript MGP_C3HHeJ_T0074213.1 MGP_C3HHeJ_G0029811.1 mouse_genomes_project 5 130753436 130816710 + Glt1d1 protein_coding retained_intron MGP_C3HHeJ_T0074214.1 MGP_C3HHeJ_G0029811.1 mouse_genomes_project 5 130753436 130836419 + MGP_C3HHeJ_P0074214 Glt1d1 protein_coding protein_coding MGP_C3HHeJ_T0074215.1 MGP_C3HHeJ_G0029811.1 mouse_genomes_project 5 130781103 130814678 + Glt1d1 protein_coding retained_intron MGP_C3HHeJ_T0014824.1 MGP_C3HHeJ_G0012928.1 mouse_genomes_project 5 63480205 63480688 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070666.1 MGP_C3HHeJ_G0029139.1 mouse_genomes_project 5 31367135 31369316 + protein_coding retained_intron MGP_C3HHeJ_T0098293.1 MGP_C3HHeJ_G0036505.1 mouse_genomes_project 5 1985375 1985503 - Gm22897 scaRNA scaRNA MGP_C3HHeJ_T0004576.1 MGP_C3HHeJ_G0003959.1 mouse_genomes_project 5 22869846 22874826 + Prkag2os1 antisense antisense MGP_C3HHeJ_T0010623.1 MGP_C3HHeJ_G0008756.1 mouse_genomes_project 5 117919780 117919841 + Mir7029 miRNA miRNA MGP_C3HHeJ_T0074815.1 MGP_C3HHeJ_G0029918.1 mouse_genomes_project 5 140924347 140947205 - MGP_C3HHeJ_P0074815 Slc12a9 protein_coding protein_coding MGP_C3HHeJ_T0074816.1 MGP_C3HHeJ_G0029918.1 mouse_genomes_project 5 140930858 140932226 - Slc12a9 protein_coding retained_intron MGP_C3HHeJ_T0074817.1 MGP_C3HHeJ_G0029918.1 mouse_genomes_project 5 140942395 140947205 - Slc12a9 protein_coding retained_intron MGP_C3HHeJ_T0074818.1 MGP_C3HHeJ_G0029918.1 mouse_genomes_project 5 140945882 140946618 - MGP_C3HHeJ_P0074818 Slc12a9 protein_coding protein_coding MGP_C3HHeJ_T0008251.1 MGP_C3HHeJ_G0006700.1 mouse_genomes_project 5 121478502 121487340 + 4930413E15Rik lincRNA lincRNA MGP_C3HHeJ_T0072367.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97189522 97200869 - Cnot6l protein_coding retained_intron MGP_C3HHeJ_T0072368.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97189535 97275415 - MGP_C3HHeJ_P0072368 Cnot6l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072369.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97189683 97275415 - MGP_C3HHeJ_P0072369 Cnot6l protein_coding protein_coding MGP_C3HHeJ_T0072370.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97191126 97247715 - MGP_C3HHeJ_P0072370 Cnot6l protein_coding protein_coding MGP_C3HHeJ_T0072371.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97219240 97244653 - Cnot6l protein_coding retained_intron MGP_C3HHeJ_T0072372.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97219929 97275402 - MGP_C3HHeJ_P0072372 Cnot6l protein_coding protein_coding MGP_C3HHeJ_T0072373.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97244653 97275531 - MGP_C3HHeJ_P0072373 Cnot6l protein_coding protein_coding MGP_C3HHeJ_T0072374.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97244689 97277575 - MGP_C3HHeJ_P0072374 Cnot6l protein_coding protein_coding MGP_C3HHeJ_T0072375.1 MGP_C3HHeJ_G0029462.1 mouse_genomes_project 5 97244800 97275423 - MGP_C3HHeJ_P0072375 Cnot6l protein_coding protein_coding MGP_C3HHeJ_T0001645.1 MGP_C3HHeJ_G0001570.1 mouse_genomes_project 5 72359940 72360930 - TEC TEC MGP_C3HHeJ_T0072883.1 MGP_C3HHeJ_G0029575.1 mouse_genomes_project 5 112056213 112079696 + MGP_C3HHeJ_P0072883 Zfp605 protein_coding protein_coding MGP_C3HHeJ_T0072884.1 MGP_C3HHeJ_G0029575.1 mouse_genomes_project 5 112056457 112077362 + Zfp605 protein_coding processed_transcript MGP_C3HHeJ_T0072885.1 MGP_C3HHeJ_G0029575.1 mouse_genomes_project 5 112056472 112077320 + MGP_C3HHeJ_P0072885 Zfp605 protein_coding protein_coding MGP_C3HHeJ_T0072886.1 MGP_C3HHeJ_G0029575.1 mouse_genomes_project 5 112058173 112079004 + MGP_C3HHeJ_P0072886 Zfp605 protein_coding protein_coding MGP_C3HHeJ_T0004647.1 MGP_C3HHeJ_G0004016.1 mouse_genomes_project 5 76333793 76334445 + Gm7467 antisense antisense MGP_C3HHeJ_T0014823.1 MGP_C3HHeJ_G0012927.1 mouse_genomes_project 5 63157391 63157851 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074351.1 MGP_C3HHeJ_G0029838.1 mouse_genomes_project 5 133447729 133458213 - MGP_C3HHeJ_P0074351 Sbds protein_coding protein_coding MGP_C3HHeJ_T0074352.1 MGP_C3HHeJ_G0029838.1 mouse_genomes_project 5 133448403 133458088 - MGP_C3HHeJ_P0074352 Sbds protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074353.1 MGP_C3HHeJ_G0029838.1 mouse_genomes_project 5 133449882 133456824 - MGP_C3HHeJ_P0074353 Sbds protein_coding protein_coding MGP_C3HHeJ_T0074354.1 MGP_C3HHeJ_G0029838.1 mouse_genomes_project 5 133450429 133458175 - Sbds protein_coding processed_transcript MGP_C3HHeJ_T0074355.1 MGP_C3HHeJ_G0029838.1 mouse_genomes_project 5 133453592 133458161 - Sbds protein_coding processed_transcript MGP_C3HHeJ_T0008288.1 MGP_C3HHeJ_G0006725.1 mouse_genomes_project 5 129034870 129059569 + Gm42952 lincRNA lincRNA MGP_C3HHeJ_T0008289.1 MGP_C3HHeJ_G0006725.1 mouse_genomes_project 5 129038497 129059770 + Gm42952 lincRNA lincRNA MGP_C3HHeJ_T0008290.1 MGP_C3HHeJ_G0006725.1 mouse_genomes_project 5 129038509 129053161 + Gm42952 lincRNA lincRNA MGP_C3HHeJ_T0008291.1 MGP_C3HHeJ_G0006725.1 mouse_genomes_project 5 129038514 129051816 + Gm42952 lincRNA lincRNA MGP_C3HHeJ_T0008292.1 MGP_C3HHeJ_G0006725.1 mouse_genomes_project 5 129038519 129059713 + Gm42952 lincRNA lincRNA MGP_C3HHeJ_T0008293.1 MGP_C3HHeJ_G0006725.1 mouse_genomes_project 5 129038533 129052792 + Gm42952 lincRNA lincRNA MGP_C3HHeJ_T0011513.1 MGP_C3HHeJ_G0009646.1 mouse_genomes_project 5 114262357 114262507 - Gm27627 misc_RNA misc_RNA MGP_C3HHeJ_T0072596.1 MGP_C3HHeJ_G0029509.1 mouse_genomes_project 5 105588849 105600545 + MGP_C3HHeJ_P0072596 Dmp1 protein_coding protein_coding MGP_C3HHeJ_T0072634.1 MGP_C3HHeJ_G0029524.1 mouse_genomes_project 5 107096751 107198198 + MGP_C3HHeJ_P0072634 Lrrc8c protein_coding protein_coding MGP_C3HHeJ_T0072635.1 MGP_C3HHeJ_G0029524.1 mouse_genomes_project 5 107096779 107159998 + MGP_C3HHeJ_P0072635 Lrrc8c protein_coding protein_coding MGP_C3HHeJ_T0072636.1 MGP_C3HHeJ_G0029524.1 mouse_genomes_project 5 107096836 107121944 + Lrrc8c protein_coding retained_intron MGP_C3HHeJ_T0072637.1 MGP_C3HHeJ_G0029524.1 mouse_genomes_project 5 107136428 107192039 + MGP_C3HHeJ_P0072637 Lrrc8c protein_coding protein_coding MGP_C3HHeJ_T0069964.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19458358 19488189 + MGP_C3HHeJ_P0069964 Pmpcb protein_coding protein_coding MGP_C3HHeJ_T0069965.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19462513 19488184 + Pmpcb protein_coding retained_intron MGP_C3HHeJ_T0069966.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19464238 19466488 + Pmpcb protein_coding retained_intron MGP_C3HHeJ_T0069967.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19468339 19469137 + Pmpcb protein_coding retained_intron MGP_C3HHeJ_T0069968.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19487550 19488178 + Pmpcb protein_coding retained_intron MGP_C3HHeJ_T0069969.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19487676 19488184 + MGP_C3HHeJ_P0069969 Pmpcb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069970.1 MGP_C3HHeJ_G0029018.1 mouse_genomes_project 5 19487812 19488178 + Pmpcb protein_coding retained_intron MGP_C3HHeJ_T0101214.1 MGP_C3HHeJ_G0039349.1 mouse_genomes_project 5 22609269 22612425 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101215.1 MGP_C3HHeJ_G0039349.1 mouse_genomes_project 5 22611248 22612299 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0074468.1 MGP_C3HHeJ_G0029852.1 mouse_genomes_project 5 137927474 137929500 - MGP_C3HHeJ_P0074468 Syna protein_coding protein_coding MGP_C3HHeJ_T0098145.1 MGP_C3HHeJ_G0036357.1 mouse_genomes_project 5 64673462 64673581 + Gm25154 rRNA rRNA MGP_C3HHeJ_T0072415.1 MGP_C3HHeJ_G0029475.1 mouse_genomes_project 5 100058421 100077679 + MGP_C3HHeJ_P0072415 Bmp3 protein_coding protein_coding MGP_C3HHeJ_T0072416.1 MGP_C3HHeJ_G0029475.1 mouse_genomes_project 5 100058445 100089699 + MGP_C3HHeJ_P0072416 Bmp3 protein_coding protein_coding MGP_C3HHeJ_T0072417.1 MGP_C3HHeJ_G0029475.1 mouse_genomes_project 5 100058457 100089699 + MGP_C3HHeJ_P0072417 Bmp3 protein_coding protein_coding MGP_C3HHeJ_T0011503.1 MGP_C3HHeJ_G0009636.1 mouse_genomes_project 5 101694006 101694080 + Gm27553 misc_RNA misc_RNA MGP_C3HHeJ_T0014839.1 MGP_C3HHeJ_G0012943.1 mouse_genomes_project 5 72582214 72582524 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014915.1 MGP_C3HHeJ_G0013019.1 mouse_genomes_project 5 107464731 107465197 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070936.1 MGP_C3HHeJ_G0029181.1 mouse_genomes_project 5 34111097 34137409 - MGP_C3HHeJ_P0070936 Htra3 protein_coding protein_coding MGP_C3HHeJ_T0070937.1 MGP_C3HHeJ_G0029181.1 mouse_genomes_project 5 34111157 34137128 - MGP_C3HHeJ_P0070937 Htra3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070938.1 MGP_C3HHeJ_G0029181.1 mouse_genomes_project 5 34119635 34137506 - MGP_C3HHeJ_P0070938 Htra3 protein_coding protein_coding MGP_C3HHeJ_T0070939.1 MGP_C3HHeJ_G0029181.1 mouse_genomes_project 5 34126275 34129637 - MGP_C3HHeJ_P0070939 Htra3 protein_coding protein_coding MGP_C3HHeJ_T0070940.1 MGP_C3HHeJ_G0029181.1 mouse_genomes_project 5 34136416 34137496 - Htra3 protein_coding retained_intron MGP_C3HHeJ_T0008101.1 MGP_C3HHeJ_G0006597.1 mouse_genomes_project 5 77521151 77564299 + Gm34728 lincRNA lincRNA MGP_C3HHeJ_T0072120.1 MGP_C3HHeJ_G0029395.1 mouse_genomes_project 5 88536303 88539715 + MGP_C3HHeJ_P0072120 2310003L06Rik protein_coding protein_coding MGP_C3HHeJ_T0001743.1 MGP_C3HHeJ_G0001667.1 mouse_genomes_project 5 118265954 118267819 + TEC TEC MGP_C3HHeJ_T0014982.1 MGP_C3HHeJ_G0013086.1 mouse_genomes_project 5 139407323 139407480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100705.1 MGP_C3HHeJ_G0038899.1 mouse_genomes_project 5 65356451 65356645 + Gm24346 snoRNA snoRNA MGP_C3HHeJ_T0001826.1 MGP_C3HHeJ_G0001749.1 mouse_genomes_project 5 135289907 135292142 - TEC TEC MGP_C3HHeJ_T0014781.1 MGP_C3HHeJ_G0012885.1 mouse_genomes_project 5 42553450 42554279 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072344.1 MGP_C3HHeJ_G0029456.1 mouse_genomes_project 5 93879629 93883743 - MGP_C3HHeJ_P0072344 Sowahb protein_coding protein_coding MGP_C3HHeJ_T0101526.1 MGP_C3HHeJ_G0039500.1 mouse_genomes_project 5 92744533 92749687 + unitary_pseudogene retained_intron MGP_C3HHeJ_T0101527.1 MGP_C3HHeJ_G0039500.1 mouse_genomes_project 5 92745034 92752720 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101528.1 MGP_C3HHeJ_G0039500.1 mouse_genomes_project 5 92745048 92753639 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101529.1 MGP_C3HHeJ_G0039500.1 mouse_genomes_project 5 92745477 92755131 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0073104.1 MGP_C3HHeJ_G0029617.1 mouse_genomes_project 5 115890503 115895313 + MGP_C3HHeJ_P0073104 Ficd protein_coding protein_coding MGP_C3HHeJ_T0071146.1 MGP_C3HHeJ_G0029218.1 mouse_genomes_project 5 40379168 40382187 - MGP_C3HHeJ_P0071146 Nkx3-2 protein_coding protein_coding MGP_C3HHeJ_T0001444.1 MGP_C3HHeJ_G0001373.1 mouse_genomes_project 5 23705370 23707393 - TEC TEC MGP_C3HHeJ_T0072872.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112050235 112051593 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0072873.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112050236 112053449 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0072874.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112050278 112054420 - MGP_C3HHeJ_P0072874 Gtpbp6 protein_coding protein_coding MGP_C3HHeJ_T0072875.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112051165 112053423 - Gtpbp6 protein_coding processed_transcript MGP_C3HHeJ_T0072876.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112051489 112053663 - MGP_C3HHeJ_P0072876 Gtpbp6 protein_coding protein_coding MGP_C3HHeJ_T0072877.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112052048 112053171 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0072878.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112052895 112054389 - Gtpbp6 protein_coding processed_transcript MGP_C3HHeJ_T0072879.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112052947 112053856 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0072880.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112053094 112053679 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0072881.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112053282 112053960 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0072882.1 MGP_C3HHeJ_G0029574.1 mouse_genomes_project 5 112053295 112054410 - Gtpbp6 protein_coding retained_intron MGP_C3HHeJ_T0008140.1 MGP_C3HHeJ_G0006629.1 mouse_genomes_project 5 101149231 101158462 + lincRNA lincRNA MGP_C3HHeJ_T0015031.1 MGP_C3HHeJ_G0013135.1 mouse_genomes_project 5 152877218 152879582 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008222.1 MGP_C3HHeJ_G0006679.1 mouse_genomes_project 5 114741795 114747052 + Gm42865 lincRNA lincRNA MGP_C3HHeJ_T0072366.1 MGP_C3HHeJ_G0029461.1 mouse_genomes_project 5 97090076 97094194 + MGP_C3HHeJ_P0072366 Cxcl13 protein_coding protein_coding MGP_C3HHeJ_T0072219.1 MGP_C3HHeJ_G0029429.1 mouse_genomes_project 5 91542634 91551256 + MGP_C3HHeJ_P0072219 Cxcl15 protein_coding protein_coding MGP_C3HHeJ_T0070747.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32214744 32267322 + MGP_C3HHeJ_P0070747 Whsc1 protein_coding protein_coding MGP_C3HHeJ_T0070748.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32214744 32292780 + MGP_C3HHeJ_P0070748 Whsc1 protein_coding protein_coding MGP_C3HHeJ_T0070749.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32236147 32292780 + MGP_C3HHeJ_P0070749 Whsc1 protein_coding protein_coding MGP_C3HHeJ_T0070750.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32236147 32292789 + MGP_C3HHeJ_P0070750 Whsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070751.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32236147 32272097 + MGP_C3HHeJ_P0070751 Whsc1 protein_coding protein_coding MGP_C3HHeJ_T0070752.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32236147 32292789 + MGP_C3HHeJ_P0070752 Whsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070753.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32236176 32290526 + MGP_C3HHeJ_P0070753 Whsc1 protein_coding protein_coding MGP_C3HHeJ_T0070754.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32236231 32290309 + MGP_C3HHeJ_P0070754 Whsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070755.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32254002 32272105 + MGP_C3HHeJ_P0070755 Whsc1 protein_coding protein_coding MGP_C3HHeJ_T0070756.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32273032 32274894 + Whsc1 protein_coding retained_intron MGP_C3HHeJ_T0070757.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32273966 32290240 + MGP_C3HHeJ_P0070757 Whsc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070758.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32280310 32286491 + Whsc1 protein_coding retained_intron MGP_C3HHeJ_T0070759.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32280324 32282512 + Whsc1 protein_coding retained_intron MGP_C3HHeJ_T0070760.1 MGP_C3HHeJ_G0029153.1 mouse_genomes_project 5 32286721 32289909 + Whsc1 protein_coding retained_intron MGP_C3HHeJ_T0071319.1 MGP_C3HHeJ_G0029247.1 mouse_genomes_project 5 51663911 51700120 - MGP_C3HHeJ_P0071319 Sepsecs protein_coding protein_coding MGP_C3HHeJ_T0071320.1 MGP_C3HHeJ_G0029247.1 mouse_genomes_project 5 51663911 51700120 - MGP_C3HHeJ_P0071320 Sepsecs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071321.1 MGP_C3HHeJ_G0029247.1 mouse_genomes_project 5 51665000 51694506 - MGP_C3HHeJ_P0071321 Sepsecs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071322.1 MGP_C3HHeJ_G0029247.1 mouse_genomes_project 5 51670461 51672336 - Sepsecs protein_coding retained_intron MGP_C3HHeJ_T0071323.1 MGP_C3HHeJ_G0029247.1 mouse_genomes_project 5 51684859 51700027 - MGP_C3HHeJ_P0071323 Sepsecs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001410.1 MGP_C3HHeJ_G0001340.1 mouse_genomes_project 5 8010194 8012271 - TEC TEC MGP_C3HHeJ_T0070436.1 MGP_C3HHeJ_G0029106.1 mouse_genomes_project 5 29278383 29285607 - MGP_C3HHeJ_P0070436 Slc30a3 protein_coding protein_coding MGP_C3HHeJ_T0070437.1 MGP_C3HHeJ_G0029106.1 mouse_genomes_project 5 29279668 29280607 - MGP_C3HHeJ_P0070437 Slc30a3 protein_coding protein_coding MGP_C3HHeJ_T0070438.1 MGP_C3HHeJ_G0029106.1 mouse_genomes_project 5 29281032 29285719 - MGP_C3HHeJ_P0070438 Slc30a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070439.1 MGP_C3HHeJ_G0029106.1 mouse_genomes_project 5 29281590 29287013 - MGP_C3HHeJ_P0070439 Slc30a3 protein_coding protein_coding MGP_C3HHeJ_T0070440.1 MGP_C3HHeJ_G0029106.1 mouse_genomes_project 5 29281626 29301032 - MGP_C3HHeJ_P0070440 Slc30a3 protein_coding protein_coding MGP_C3HHeJ_T0008401.1 MGP_C3HHeJ_G0006804.1 mouse_genomes_project 5 156254133 156319960 - D730045B01Rik lincRNA lincRNA MGP_C3HHeJ_T0008402.1 MGP_C3HHeJ_G0006804.1 mouse_genomes_project 5 156255277 156255586 - D730045B01Rik lincRNA lincRNA MGP_C3HHeJ_T0102061.1 MGP_C3HHeJ_G0040026.1 mouse_genomes_project 5 150351549 150353490 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0014843.1 MGP_C3HHeJ_G0012947.1 mouse_genomes_project 5 74877031 74877932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072706.1 MGP_C3HHeJ_G0029536.1 mouse_genomes_project 5 109120441 109199194 + MGP_C3HHeJ_P0072706 protein_coding unknown_likely_coding MGP_C3HHeJ_T0072707.1 MGP_C3HHeJ_G0029536.1 mouse_genomes_project 5 109120472 109178442 + MGP_C3HHeJ_P0072707 protein_coding protein_coding MGP_C3HHeJ_T0072708.1 MGP_C3HHeJ_G0029536.1 mouse_genomes_project 5 109134834 109154948 + protein_coding processed_transcript MGP_C3HHeJ_T0010627.1 MGP_C3HHeJ_G0008760.1 mouse_genomes_project 5 125623827 125623946 + Mir8115 miRNA miRNA MGP_C3HHeJ_T0008338.1 MGP_C3HHeJ_G0006756.1 mouse_genomes_project 5 141957339 141957804 + Gm43645 lincRNA lincRNA MGP_C3HHeJ_T0008398.1 MGP_C3HHeJ_G0006801.1 mouse_genomes_project 5 155696801 155741749 + Gm43299 lincRNA lincRNA MGP_C3HHeJ_T0014889.1 MGP_C3HHeJ_G0012993.1 mouse_genomes_project 5 93174641 93177283 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004710.1 MGP_C3HHeJ_G0004059.1 mouse_genomes_project 5 116004012 116004528 + Gm17122 antisense antisense MGP_C3HHeJ_T0072408.1 MGP_C3HHeJ_G0029472.1 mouse_genomes_project 5 99432808 99461640 + MGP_C3HHeJ_P0072408 Fgf5 protein_coding protein_coding MGP_C3HHeJ_T0072409.1 MGP_C3HHeJ_G0029472.1 mouse_genomes_project 5 99433036 99460111 + MGP_C3HHeJ_P0072409 Fgf5 protein_coding protein_coding MGP_C3HHeJ_T0074992.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141873085 141881674 - MGP_C3HHeJ_P0074992 Taf6 protein_coding protein_coding MGP_C3HHeJ_T0074993.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141873085 141881899 - MGP_C3HHeJ_P0074993 Taf6 protein_coding protein_coding MGP_C3HHeJ_T0074994.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141873088 141881653 - MGP_C3HHeJ_P0074994 Taf6 protein_coding protein_coding MGP_C3HHeJ_T0074995.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141873096 141881669 - MGP_C3HHeJ_P0074995 Taf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074996.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141874603 141875924 - Taf6 protein_coding retained_intron MGP_C3HHeJ_T0074997.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141877130 141881674 - MGP_C3HHeJ_P0074997 Taf6 protein_coding protein_coding MGP_C3HHeJ_T0074998.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141878370 141881663 - MGP_C3HHeJ_P0074998 Taf6 protein_coding protein_coding MGP_C3HHeJ_T0074999.1 MGP_C3HHeJ_G0029954.1 mouse_genomes_project 5 141880525 141881664 - Taf6 protein_coding processed_transcript MGP_C3HHeJ_T0071840.1 MGP_C3HHeJ_G0029336.1 mouse_genomes_project 5 75073626 75075919 + MGP_C3HHeJ_P0071840 Gsx2 protein_coding protein_coding MGP_C3HHeJ_T0071841.1 MGP_C3HHeJ_G0029336.1 mouse_genomes_project 5 75073627 75075651 + MGP_C3HHeJ_P0071841 Gsx2 protein_coding protein_coding MGP_C3HHeJ_T0008342.1 MGP_C3HHeJ_G0006760.1 mouse_genomes_project 5 144645861 144646624 - Gm43703 lincRNA lincRNA MGP_C3HHeJ_T0001474.1 MGP_C3HHeJ_G0001401.1 mouse_genomes_project 5 33844686 33845926 - TEC TEC MGP_C3HHeJ_T0017958.1 MGP_C3HHeJ_G0015372.1 mouse_genomes_project 5 126367776 126371893 + processed_transcript sense_intronic MGP_C3HHeJ_T0017959.1 MGP_C3HHeJ_G0015372.1 mouse_genomes_project 5 126370929 126372851 + processed_transcript TEC MGP_C3HHeJ_T0069917.1 MGP_C3HHeJ_G0029007.1 mouse_genomes_project 5 18534439 18539119 + MGP_C3HHeJ_P0069917 Tmem60 protein_coding protein_coding MGP_C3HHeJ_T0069918.1 MGP_C3HHeJ_G0029007.1 mouse_genomes_project 5 18534755 18536933 + Tmem60 protein_coding processed_transcript MGP_C3HHeJ_T0098156.1 MGP_C3HHeJ_G0036368.1 mouse_genomes_project 5 154062207 154062313 - n-R5s180 rRNA rRNA MGP_C3HHeJ_T0001598.1 MGP_C3HHeJ_G0001523.1 mouse_genomes_project 5 65032200 65033745 - TEC TEC MGP_C3HHeJ_T0008225.1 MGP_C3HHeJ_G0006682.1 mouse_genomes_project 5 116772613 116775341 + Gm13790 lincRNA lincRNA MGP_C3HHeJ_T0014845.1 MGP_C3HHeJ_G0012949.1 mouse_genomes_project 5 75112743 75113032 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070977.1 MGP_C3HHeJ_G0029188.1 mouse_genomes_project 5 34955863 34968289 - MGP_C3HHeJ_P0070977 Tada2b protein_coding protein_coding MGP_C3HHeJ_T0070978.1 MGP_C3HHeJ_G0029188.1 mouse_genomes_project 5 34958988 34967371 - MGP_C3HHeJ_P0070978 Tada2b protein_coding protein_coding MGP_C3HHeJ_T0004572.1 MGP_C3HHeJ_G0003956.1 mouse_genomes_project 5 22311681 22329028 - Gm15587 antisense antisense MGP_C3HHeJ_T0004573.1 MGP_C3HHeJ_G0003956.1 mouse_genomes_project 5 22314676 22329060 - Gm15587 antisense antisense MGP_C3HHeJ_T0014975.1 MGP_C3HHeJ_G0013079.1 mouse_genomes_project 5 133387157 133387559 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001792.1 MGP_C3HHeJ_G0001715.1 mouse_genomes_project 5 128366051 128368811 - TEC TEC MGP_C3HHeJ_T0008207.1 MGP_C3HHeJ_G0006671.1 mouse_genomes_project 5 113974950 113979383 - Gm42488 lincRNA lincRNA MGP_C3HHeJ_T0073384.1 MGP_C3HHeJ_G0029670.1 mouse_genomes_project 5 117972716 117988522 + MGP_C3HHeJ_P0073384 Rab35 protein_coding protein_coding MGP_C3HHeJ_T0073385.1 MGP_C3HHeJ_G0029670.1 mouse_genomes_project 5 117972952 117986905 + MGP_C3HHeJ_P0073385 Rab35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070036.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680896 21683189 + MGP_C3HHeJ_P0070036 Rint1 protein_coding protein_coding MGP_C3HHeJ_T0070037.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680896 21718830 + MGP_C3HHeJ_P0070037 Rint1 protein_coding protein_coding MGP_C3HHeJ_T0070038.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680897 21687086 + MGP_C3HHeJ_P0070038 Rint1 protein_coding protein_coding MGP_C3HHeJ_T0070039.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680900 21718758 + MGP_C3HHeJ_P0070039 Rint1 protein_coding protein_coding MGP_C3HHeJ_T0070040.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680904 21718829 + Rint1 protein_coding retained_intron MGP_C3HHeJ_T0070041.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680906 21683214 + Rint1 protein_coding retained_intron MGP_C3HHeJ_T0070042.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21680926 21690243 + Rint1 protein_coding processed_transcript MGP_C3HHeJ_T0070043.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21703884 21707269 + Rint1 protein_coding retained_intron MGP_C3HHeJ_T0070044.1 MGP_C3HHeJ_G0029029.1 mouse_genomes_project 5 21708864 21712822 + Rint1 protein_coding processed_transcript MGP_C3HHeJ_T0073880.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126036125 126083801 + Tmem120b protein_coding processed_transcript MGP_C3HHeJ_T0073881.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126043757 126084868 + MGP_C3HHeJ_P0073881 Tmem120b protein_coding protein_coding MGP_C3HHeJ_T0073882.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126043807 126082247 + MGP_C3HHeJ_P0073882 Tmem120b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073883.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126043808 126084128 + MGP_C3HHeJ_P0073883 Tmem120b protein_coding protein_coding MGP_C3HHeJ_T0073884.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126043823 126082265 + MGP_C3HHeJ_P0073884 Tmem120b protein_coding protein_coding MGP_C3HHeJ_T0073885.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126043833 126072083 + Tmem120b protein_coding retained_intron MGP_C3HHeJ_T0073886.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126043852 126067878 + Tmem120b protein_coding retained_intron MGP_C3HHeJ_T0073887.1 MGP_C3HHeJ_G0029756.1 mouse_genomes_project 5 126067410 126082937 + Tmem120b protein_coding retained_intron MGP_C3HHeJ_T0014849.1 MGP_C3HHeJ_G0012953.1 mouse_genomes_project 5 76099129 76099413 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099492.1 MGP_C3HHeJ_G0037686.1 mouse_genomes_project 5 142209710 142209817 + Gm25525 snRNA snRNA MGP_C3HHeJ_T0072234.1 MGP_C3HHeJ_G0029436.1 mouse_genomes_project 5 92096287 92143292 - MGP_C3HHeJ_P0072234 Btc protein_coding protein_coding MGP_C3HHeJ_T0072235.1 MGP_C3HHeJ_G0029436.1 mouse_genomes_project 5 92096415 92143120 - Btc protein_coding retained_intron MGP_C3HHeJ_T0072236.1 MGP_C3HHeJ_G0029436.1 mouse_genomes_project 5 92097945 92143158 - MGP_C3HHeJ_P0072236 Btc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072237.1 MGP_C3HHeJ_G0029436.1 mouse_genomes_project 5 92104907 92116139 - Btc protein_coding processed_transcript MGP_C3HHeJ_T0014967.1 MGP_C3HHeJ_G0013071.1 mouse_genomes_project 5 125361896 125362216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008037.1 MGP_C3HHeJ_G0006544.1 mouse_genomes_project 5 42062061 42066223 + Gm43021 lincRNA lincRNA MGP_C3HHeJ_T0074514.1 MGP_C3HHeJ_G0029862.1 mouse_genomes_project 5 138409922 138411181 + MGP_C3HHeJ_P0074514 Cldn3 protein_coding protein_coding MGP_C3HHeJ_T0099451.1 MGP_C3HHeJ_G0037645.1 mouse_genomes_project 5 80105360 80105509 - Gm23429 snRNA snRNA MGP_C3HHeJ_T0072133.1 MGP_C3HHeJ_G0029406.1 mouse_genomes_project 5 89137540 89155015 + MGP_C3HHeJ_P0072133 Enam protein_coding protein_coding MGP_C3HHeJ_T0072134.1 MGP_C3HHeJ_G0029406.1 mouse_genomes_project 5 89137547 89156334 + MGP_C3HHeJ_P0072134 Enam protein_coding protein_coding MGP_C3HHeJ_T0001670.1 MGP_C3HHeJ_G0001594.1 mouse_genomes_project 5 81636060 81639502 + TEC TEC MGP_C3HHeJ_T0071878.1 MGP_C3HHeJ_G0029343.1 mouse_genomes_project 5 76344936 76364244 - MGP_C3HHeJ_P0071878 Pdcl2 protein_coding protein_coding MGP_C3HHeJ_T0071879.1 MGP_C3HHeJ_G0029343.1 mouse_genomes_project 5 76344948 76364267 - MGP_C3HHeJ_P0071879 Pdcl2 protein_coding protein_coding MGP_C3HHeJ_T0014987.1 MGP_C3HHeJ_G0013091.1 mouse_genomes_project 5 141053255 141053532 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004611.1 MGP_C3HHeJ_G0003986.1 mouse_genomes_project 5 42830656 42835044 + Gm42982 antisense antisense MGP_C3HHeJ_T0008391.1 MGP_C3HHeJ_G0006797.1 mouse_genomes_project 5 155355116 155357490 - Gm5 lincRNA lincRNA MGP_C3HHeJ_T0008392.1 MGP_C3HHeJ_G0006797.1 mouse_genomes_project 5 155355184 155357661 - Gm5 lincRNA lincRNA MGP_C3HHeJ_T0001785.1 MGP_C3HHeJ_G0001709.1 mouse_genomes_project 5 126687975 126688507 + TEC TEC MGP_C3HHeJ_T0008118.1 MGP_C3HHeJ_G0006611.1 mouse_genomes_project 5 92526105 92527144 - 1700063O14Rik lincRNA lincRNA MGP_C3HHeJ_T0004825.1 MGP_C3HHeJ_G0004140.1 mouse_genomes_project 5 155124846 155142470 - Gm42556 antisense antisense MGP_C3HHeJ_T0075552.1 MGP_C3HHeJ_G0030079.1 mouse_genomes_project 5 151632900 151696480 - MGP_C3HHeJ_P0075552 Lnx2 protein_coding protein_coding MGP_C3HHeJ_T0075553.1 MGP_C3HHeJ_G0030079.1 mouse_genomes_project 5 151634538 151635310 - Lnx2 protein_coding processed_transcript MGP_C3HHeJ_T0099418.1 MGP_C3HHeJ_G0037612.1 mouse_genomes_project 5 6945329 6945431 - Gm23312 snRNA snRNA MGP_C3HHeJ_T0075153.1 MGP_C3HHeJ_G0029987.1 mouse_genomes_project 5 143760090 143771200 + MGP_C3HHeJ_P0075153 Mafk protein_coding protein_coding MGP_C3HHeJ_T0075154.1 MGP_C3HHeJ_G0029987.1 mouse_genomes_project 5 143760111 143768045 + Mafk protein_coding processed_transcript MGP_C3HHeJ_T0075155.1 MGP_C3HHeJ_G0029987.1 mouse_genomes_project 5 143766054 143770876 + MGP_C3HHeJ_P0075155 Mafk protein_coding protein_coding MGP_C3HHeJ_T0099461.1 MGP_C3HHeJ_G0037655.1 mouse_genomes_project 5 93110363 93110482 + Gm23031 snRNA snRNA MGP_C3HHeJ_T0073026.1 MGP_C3HHeJ_G0029601.1 mouse_genomes_project 5 114391579 114394194 - Srrd protein_coding processed_transcript MGP_C3HHeJ_T0073027.1 MGP_C3HHeJ_G0029601.1 mouse_genomes_project 5 114391579 114397192 - MGP_C3HHeJ_P0073027 Srrd protein_coding protein_coding MGP_C3HHeJ_T0073028.1 MGP_C3HHeJ_G0029601.1 mouse_genomes_project 5 114391579 114397212 - MGP_C3HHeJ_P0073028 Srrd protein_coding protein_coding MGP_C3HHeJ_T0073029.1 MGP_C3HHeJ_G0029601.1 mouse_genomes_project 5 114392096 114394104 - Srrd protein_coding retained_intron MGP_C3HHeJ_T0073030.1 MGP_C3HHeJ_G0029601.1 mouse_genomes_project 5 114392159 114397190 - Srrd protein_coding processed_transcript MGP_C3HHeJ_T0073031.1 MGP_C3HHeJ_G0029601.1 mouse_genomes_project 5 114393890 114394391 - Srrd protein_coding processed_transcript MGP_C3HHeJ_T0007980.1 MGP_C3HHeJ_G0006507.1 mouse_genomes_project 5 22396421 22397003 + 2310074N15Rik lincRNA lincRNA MGP_C3HHeJ_T0070383.1 MGP_C3HHeJ_G0029097.1 mouse_genomes_project 5 29077374 29079278 - MGP_C3HHeJ_P0070383 Ost4 protein_coding protein_coding MGP_C3HHeJ_T0070384.1 MGP_C3HHeJ_G0029097.1 mouse_genomes_project 5 29078007 29079215 - MGP_C3HHeJ_P0070384 Ost4 protein_coding protein_coding MGP_C3HHeJ_T0071444.1 MGP_C3HHeJ_G0029272.1 mouse_genomes_project 5 64668231 64705224 + MGP_C3HHeJ_P0071444 Klhl5 protein_coding protein_coding MGP_C3HHeJ_T0071445.1 MGP_C3HHeJ_G0029272.1 mouse_genomes_project 5 64668307 64670738 + Klhl5 protein_coding retained_intron MGP_C3HHeJ_T0071446.1 MGP_C3HHeJ_G0029272.1 mouse_genomes_project 5 64668552 64704108 + MGP_C3HHeJ_P0071446 Klhl5 protein_coding protein_coding MGP_C3HHeJ_T0071447.1 MGP_C3HHeJ_G0029272.1 mouse_genomes_project 5 64668558 64671695 + Klhl5 protein_coding processed_transcript MGP_C3HHeJ_T0071448.1 MGP_C3HHeJ_G0029272.1 mouse_genomes_project 5 64668826 64690800 + Klhl5 protein_coding processed_transcript MGP_C3HHeJ_T0071449.1 MGP_C3HHeJ_G0029272.1 mouse_genomes_project 5 64693255 64705224 + MGP_C3HHeJ_P0071449 Klhl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004687.1 MGP_C3HHeJ_G0004041.1 mouse_genomes_project 5 104876481 104895972 - Gm42620 antisense antisense MGP_C3HHeJ_T0008269.1 MGP_C3HHeJ_G0006715.1 mouse_genomes_project 5 126100883 126104027 + lincRNA lincRNA MGP_C3HHeJ_T0008273.1 MGP_C3HHeJ_G0006715.1 mouse_genomes_project 5 126103857 126105793 + lincRNA lincRNA MGP_C3HHeJ_T0074668.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616515 139651124 + MGP_C3HHeJ_P0074668 Rasa4 protein_coding protein_coding MGP_C3HHeJ_T0074669.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616553 139651124 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074670.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616597 139651119 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074671.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616597 139649221 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074672.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616598 139627039 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074673.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616617 139651119 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074674.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616631 139651124 + MGP_C3HHeJ_P0074674 Rasa4 protein_coding protein_coding MGP_C3HHeJ_T0074675.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139616688 139646771 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074676.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139617669 139624856 + Rasa4 protein_coding processed_transcript MGP_C3HHeJ_T0074677.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139624693 139626163 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074678.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139631985 139641555 + MGP_C3HHeJ_P0074678 Rasa4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074679.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139643153 139645293 + MGP_C3HHeJ_P0074679 Rasa4 protein_coding protein_coding MGP_C3HHeJ_T0074680.1 MGP_C3HHeJ_G0029893.1 mouse_genomes_project 5 139650195 139650794 + Rasa4 protein_coding retained_intron MGP_C3HHeJ_T0074922.1 MGP_C3HHeJ_G0029937.1 mouse_genomes_project 5 141446223 141447137 + MGP_C3HHeJ_P0074922 Ppp1r35 protein_coding protein_coding MGP_C3HHeJ_T0074923.1 MGP_C3HHeJ_G0029937.1 mouse_genomes_project 5 141446278 141447485 + MGP_C3HHeJ_P0074923 Ppp1r35 protein_coding protein_coding MGP_C3HHeJ_T0074924.1 MGP_C3HHeJ_G0029937.1 mouse_genomes_project 5 141446811 141447481 + MGP_C3HHeJ_P0074924 Ppp1r35 protein_coding protein_coding MGP_C3HHeJ_T0074925.1 MGP_C3HHeJ_G0029937.1 mouse_genomes_project 5 141446918 141447485 + Ppp1r35 protein_coding retained_intron MGP_C3HHeJ_T0074195.1 MGP_C3HHeJ_G0029808.1 mouse_genomes_project 5 128597233 128694036 + MGP_C3HHeJ_P0074195 Tmem132b protein_coding protein_coding MGP_C3HHeJ_T0074196.1 MGP_C3HHeJ_G0029808.1 mouse_genomes_project 5 128597845 128860101 + MGP_C3HHeJ_P0074196 Tmem132b protein_coding protein_coding MGP_C3HHeJ_T0074197.1 MGP_C3HHeJ_G0029808.1 mouse_genomes_project 5 128693743 128772155 + Tmem132b protein_coding retained_intron MGP_C3HHeJ_T0001632.1 MGP_C3HHeJ_G0001557.1 mouse_genomes_project 5 67502757 67506236 - TEC TEC MGP_C3HHeJ_T0001447.1 MGP_C3HHeJ_G0001376.1 mouse_genomes_project 5 26129367 26133719 - TEC TEC MGP_C3HHeJ_T0099415.1 MGP_C3HHeJ_G0037609.1 mouse_genomes_project 5 3513894 3513987 + Gm24686 snRNA snRNA MGP_C3HHeJ_T0014777.1 MGP_C3HHeJ_G0012881.1 mouse_genomes_project 5 40475256 40476148 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072715.1 MGP_C3HHeJ_G0029539.1 mouse_genomes_project 5 109224492 109238197 + MGP_C3HHeJ_P0072715 1700028K03Rik protein_coding protein_coding MGP_C3HHeJ_T0072716.1 MGP_C3HHeJ_G0029539.1 mouse_genomes_project 5 109224503 109241648 + 1700028K03Rik protein_coding processed_transcript MGP_C3HHeJ_T0072717.1 MGP_C3HHeJ_G0029539.1 mouse_genomes_project 5 109224520 109239033 + MGP_C3HHeJ_P0072717 1700028K03Rik protein_coding protein_coding MGP_C3HHeJ_T0072718.1 MGP_C3HHeJ_G0029539.1 mouse_genomes_project 5 109224540 109238841 + 1700028K03Rik protein_coding retained_intron MGP_C3HHeJ_T0074775.1 MGP_C3HHeJ_G0029910.1 mouse_genomes_project 5 140656414 140673826 - MGP_C3HHeJ_P0074775 Serpine1 protein_coding protein_coding MGP_C3HHeJ_T0074776.1 MGP_C3HHeJ_G0029910.1 mouse_genomes_project 5 140656422 140673821 - MGP_C3HHeJ_P0074776 Serpine1 protein_coding protein_coding MGP_C3HHeJ_T0074777.1 MGP_C3HHeJ_G0029910.1 mouse_genomes_project 5 140668963 140673835 - Serpine1 protein_coding retained_intron MGP_C3HHeJ_T0010617.1 MGP_C3HHeJ_G0008750.1 mouse_genomes_project 5 112639160 112639227 - Mir7026 miRNA miRNA MGP_C3HHeJ_T0073605.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 123988594 124144575 + MGP_C3HHeJ_P0073605 Gm15800 protein_coding protein_coding MGP_C3HHeJ_T0073606.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 124059727 124077928 + MGP_C3HHeJ_P0073606 Gm15800 protein_coding protein_coding MGP_C3HHeJ_T0073607.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 124060330 124078511 + Gm15800 protein_coding retained_intron MGP_C3HHeJ_T0073608.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 124064779 124072926 + MGP_C3HHeJ_P0073608 Gm15800 protein_coding protein_coding MGP_C3HHeJ_T0073609.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 124079225 124099225 + MGP_C3HHeJ_P0073609 Gm15800 protein_coding protein_coding MGP_C3HHeJ_T0073610.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 124090145 124093052 + Gm15800 protein_coding processed_transcript MGP_C3HHeJ_T0073611.1 MGP_C3HHeJ_G0029718.1 mouse_genomes_project 5 124094423 124097181 + Gm15800 protein_coding processed_transcript MGP_C3HHeJ_T0004714.1 MGP_C3HHeJ_G0004063.1 mouse_genomes_project 5 117247482 117281067 + Hnf1aos1 antisense antisense MGP_C3HHeJ_T0004716.1 MGP_C3HHeJ_G0004063.1 mouse_genomes_project 5 117248595 117265905 + Hnf1aos1 antisense antisense MGP_C3HHeJ_T0004717.1 MGP_C3HHeJ_G0004063.1 mouse_genomes_project 5 117248618 117281260 + Hnf1aos1 antisense antisense MGP_C3HHeJ_T0072562.1 MGP_C3HHeJ_G0029500.1 mouse_genomes_project 5 104968163 104992540 - MGP_C3HHeJ_P0072562 Slc10a6 protein_coding protein_coding MGP_C3HHeJ_T0073591.1 MGP_C3HHeJ_G0029714.1 mouse_genomes_project 5 123562326 123563609 - protein_coding retained_intron MGP_C3HHeJ_T0072726.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279649 109348113 + MGP_C3HHeJ_P0072726 Rpap2 protein_coding protein_coding MGP_C3HHeJ_T0072727.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279670 109328155 + MGP_C3HHeJ_P0072727 Rpap2 protein_coding protein_coding MGP_C3HHeJ_T0072728.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279674 109285146 + Rpap2 protein_coding processed_transcript MGP_C3HHeJ_T0072729.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279681 109348117 + MGP_C3HHeJ_P0072729 Rpap2 protein_coding protein_coding MGP_C3HHeJ_T0072730.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279727 109328155 + MGP_C3HHeJ_P0072730 Rpap2 protein_coding protein_coding MGP_C3HHeJ_T0072731.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279914 109284974 + MGP_C3HHeJ_P0072731 Rpap2 protein_coding protein_coding MGP_C3HHeJ_T0072732.1 MGP_C3HHeJ_G0029541.1 mouse_genomes_project 5 109279935 109290109 + MGP_C3HHeJ_P0072732 Rpap2 protein_coding protein_coding MGP_C3HHeJ_T0074560.1 MGP_C3HHeJ_G0029870.1 mouse_genomes_project 5 138604026 138617560 + MGP_C3HHeJ_P0074560 Bcl7b protein_coding protein_coding MGP_C3HHeJ_T0074561.1 MGP_C3HHeJ_G0029870.1 mouse_genomes_project 5 138604132 138609192 + MGP_C3HHeJ_P0074561 Bcl7b protein_coding protein_coding MGP_C3HHeJ_T0074562.1 MGP_C3HHeJ_G0029870.1 mouse_genomes_project 5 138604155 138617536 + MGP_C3HHeJ_P0074562 Bcl7b protein_coding protein_coding MGP_C3HHeJ_T0074563.1 MGP_C3HHeJ_G0029870.1 mouse_genomes_project 5 138604188 138616300 + MGP_C3HHeJ_P0074563 Bcl7b protein_coding protein_coding MGP_C3HHeJ_T0074564.1 MGP_C3HHeJ_G0029870.1 mouse_genomes_project 5 138615311 138616830 + Bcl7b protein_coding retained_intron MGP_C3HHeJ_T0099453.1 MGP_C3HHeJ_G0037647.1 mouse_genomes_project 5 81275570 81275673 + Gm22974 snRNA snRNA MGP_C3HHeJ_T0074985.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141866463 141874885 + MGP_C3HHeJ_P0074985 Ap4m1 protein_coding protein_coding MGP_C3HHeJ_T0074986.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141866466 141869482 + MGP_C3HHeJ_P0074986 Ap4m1 protein_coding protein_coding MGP_C3HHeJ_T0074987.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141866508 141868841 + Ap4m1 protein_coding retained_intron MGP_C3HHeJ_T0074988.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141866529 141873150 + MGP_C3HHeJ_P0074988 Ap4m1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074989.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141867044 141869413 + Ap4m1 protein_coding retained_intron MGP_C3HHeJ_T0074990.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141869254 141871669 + Ap4m1 protein_coding retained_intron MGP_C3HHeJ_T0074991.1 MGP_C3HHeJ_G0029953.1 mouse_genomes_project 5 141871037 141873156 + Ap4m1 protein_coding retained_intron MGP_C3HHeJ_T0075542.1 MGP_C3HHeJ_G0030077.1 mouse_genomes_project 5 151552034 151558977 + MGP_C3HHeJ_P0075542 Gtf3a protein_coding protein_coding MGP_C3HHeJ_T0075543.1 MGP_C3HHeJ_G0030077.1 mouse_genomes_project 5 151552075 151558966 + Gtf3a protein_coding retained_intron MGP_C3HHeJ_T0075544.1 MGP_C3HHeJ_G0030077.1 mouse_genomes_project 5 151552082 151558969 + MGP_C3HHeJ_P0075544 Gtf3a protein_coding protein_coding MGP_C3HHeJ_T0075545.1 MGP_C3HHeJ_G0030077.1 mouse_genomes_project 5 151553369 151558966 + Gtf3a protein_coding retained_intron MGP_C3HHeJ_T0070224.1 MGP_C3HHeJ_G0029069.1 mouse_genomes_project 5 26420495 26457104 + MGP_C3HHeJ_P0070224 Rbm33 protein_coding non_stop_decay MGP_C3HHeJ_T0070225.1 MGP_C3HHeJ_G0029069.1 mouse_genomes_project 5 26420551 26520628 + MGP_C3HHeJ_P0070225 Rbm33 protein_coding protein_coding MGP_C3HHeJ_T0070226.1 MGP_C3HHeJ_G0029069.1 mouse_genomes_project 5 26420551 26523767 + MGP_C3HHeJ_P0070226 Rbm33 protein_coding protein_coding MGP_C3HHeJ_T0070227.1 MGP_C3HHeJ_G0029069.1 mouse_genomes_project 5 26420576 26459984 + MGP_C3HHeJ_P0070227 Rbm33 protein_coding protein_coding MGP_C3HHeJ_T0070228.1 MGP_C3HHeJ_G0029069.1 mouse_genomes_project 5 26498583 26518199 + MGP_C3HHeJ_P0070228 Rbm33 protein_coding protein_coding MGP_C3HHeJ_T0070229.1 MGP_C3HHeJ_G0029069.1 mouse_genomes_project 5 26515181 26518552 + MGP_C3HHeJ_P0070229 Rbm33 protein_coding protein_coding MGP_C3HHeJ_T0001727.1 MGP_C3HHeJ_G0001651.1 mouse_genomes_project 5 114426691 114427058 - TEC TEC MGP_C3HHeJ_T0014831.1 MGP_C3HHeJ_G0012935.1 mouse_genomes_project 5 67647717 67648230 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073589.1 MGP_C3HHeJ_G0029713.1 mouse_genomes_project 5 123546188 123558033 + MGP_C3HHeJ_P0073589 Oas1h protein_coding protein_coding MGP_C3HHeJ_T0073590.1 MGP_C3HHeJ_G0029713.1 mouse_genomes_project 5 123546205 123557666 + MGP_C3HHeJ_P0073590 Oas1h protein_coding protein_coding MGP_C3HHeJ_T0014979.1 MGP_C3HHeJ_G0013083.1 mouse_genomes_project 5 138431778 138431950 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010650.1 MGP_C3HHeJ_G0008783.1 mouse_genomes_project 5 144436722 144436793 + Mir7038 miRNA miRNA MGP_C3HHeJ_T0072788.1 MGP_C3HHeJ_G0029550.1 mouse_genomes_project 5 110023655 110035728 + MGP_C3HHeJ_P0072788 Dr1 protein_coding protein_coding MGP_C3HHeJ_T0072789.1 MGP_C3HHeJ_G0029550.1 mouse_genomes_project 5 110032122 110033817 + Dr1 protein_coding processed_transcript MGP_C3HHeJ_T0099430.1 MGP_C3HHeJ_G0037624.1 mouse_genomes_project 5 31257969 31258069 + Gm24003 snRNA snRNA MGP_C3HHeJ_T0001528.1 MGP_C3HHeJ_G0001455.1 mouse_genomes_project 5 47742081 47744978 - TEC TEC MGP_C3HHeJ_T0004656.1 MGP_C3HHeJ_G0004024.1 mouse_genomes_project 5 88529617 88532482 + BC051076 antisense antisense MGP_C3HHeJ_T0004657.1 MGP_C3HHeJ_G0004024.1 mouse_genomes_project 5 88529617 88532485 + BC051076 antisense antisense MGP_C3HHeJ_T0073600.1 MGP_C3HHeJ_G0029717.1 mouse_genomes_project 5 123970394 123977445 + MGP_C3HHeJ_P0073600 Rpl6 protein_coding protein_coding MGP_C3HHeJ_T0073601.1 MGP_C3HHeJ_G0029717.1 mouse_genomes_project 5 123970459 123971173 + Rpl6 protein_coding retained_intron MGP_C3HHeJ_T0073602.1 MGP_C3HHeJ_G0029717.1 mouse_genomes_project 5 123972551 123973298 + Rpl6 protein_coding retained_intron MGP_C3HHeJ_T0073603.1 MGP_C3HHeJ_G0029717.1 mouse_genomes_project 5 123972637 123977169 + MGP_C3HHeJ_P0073603 Rpl6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073604.1 MGP_C3HHeJ_G0029717.1 mouse_genomes_project 5 123974109 123977170 + Rpl6 protein_coding retained_intron MGP_C3HHeJ_T0001590.1 MGP_C3HHeJ_G0001515.1 mouse_genomes_project 5 63726583 63728898 + TEC TEC MGP_C3HHeJ_T0072213.1 MGP_C3HHeJ_G0029426.1 mouse_genomes_project 5 91514110 91515654 + MGP_C3HHeJ_P0072213 Ppbp protein_coding protein_coding MGP_C3HHeJ_T0070558.1 MGP_C3HHeJ_G0029123.1 mouse_genomes_project 5 29680155 29698853 + MGP_C3HHeJ_P0070558 protein_coding protein_coding MGP_C3HHeJ_T0070559.1 MGP_C3HHeJ_G0029123.1 mouse_genomes_project 5 29680159 29713950 + MGP_C3HHeJ_P0070559 protein_coding protein_coding MGP_C3HHeJ_T0070560.1 MGP_C3HHeJ_G0029123.1 mouse_genomes_project 5 29680174 29705652 + MGP_C3HHeJ_P0070560 protein_coding protein_coding MGP_C3HHeJ_T0070561.1 MGP_C3HHeJ_G0029123.1 mouse_genomes_project 5 29680240 29713945 + MGP_C3HHeJ_P0070561 protein_coding protein_coding MGP_C3HHeJ_T0070562.1 MGP_C3HHeJ_G0029123.1 mouse_genomes_project 5 29696949 29705039 + MGP_C3HHeJ_P0070562 protein_coding protein_coding MGP_C3HHeJ_T0101224.1 MGP_C3HHeJ_G0039357.1 mouse_genomes_project 5 72457136 72458311 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0069850.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10500302 10711003 + Sema3a protein_coding processed_transcript MGP_C3HHeJ_T0069851.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10500380 10693990 + Sema3a protein_coding retained_intron MGP_C3HHeJ_T0069852.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10500481 10935332 + Sema3a protein_coding retained_intron MGP_C3HHeJ_T0069853.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10805149 11011998 + MGP_C3HHeJ_P0069853 Sema3a protein_coding protein_coding MGP_C3HHeJ_T0069854.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10807969 10861779 + MGP_C3HHeJ_P0069854 Sema3a protein_coding protein_coding MGP_C3HHeJ_T0069855.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10808278 11010358 + MGP_C3HHeJ_P0069855 Sema3a protein_coding protein_coding MGP_C3HHeJ_T0069856.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10808645 11013575 + MGP_C3HHeJ_P0069856 Sema3a protein_coding protein_coding MGP_C3HHeJ_T0069857.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10808660 10861749 + MGP_C3HHeJ_P0069857 Sema3a protein_coding protein_coding MGP_C3HHeJ_T0069858.1 MGP_C3HHeJ_G0028995.1 mouse_genomes_project 5 10808913 10907156 + Sema3a protein_coding processed_transcript MGP_C3HHeJ_T0001457.1 MGP_C3HHeJ_G0001385.1 mouse_genomes_project 5 29692368 29693756 + TEC TEC MGP_C3HHeJ_T0075707.1 MGP_C3HHeJ_G0030105.1 mouse_genomes_project 5 155362345 155376854 - MGP_C3HHeJ_P0075707 Zar1l protein_coding protein_coding MGP_C3HHeJ_T0008085.1 MGP_C3HHeJ_G0006583.1 mouse_genomes_project 5 74728258 74731175 - Gm15985 lincRNA lincRNA MGP_C3HHeJ_T0072914.1 MGP_C3HHeJ_G0029580.1 mouse_genomes_project 5 112228509 112240378 - MGP_C3HHeJ_P0072914 Pxmp2 protein_coding protein_coding MGP_C3HHeJ_T0072915.1 MGP_C3HHeJ_G0029580.1 mouse_genomes_project 5 112228522 112240213 - MGP_C3HHeJ_P0072915 Pxmp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072916.1 MGP_C3HHeJ_G0029580.1 mouse_genomes_project 5 112234983 112240194 - Pxmp2 protein_coding processed_transcript MGP_C3HHeJ_T0072917.1 MGP_C3HHeJ_G0029580.1 mouse_genomes_project 5 112237703 112240311 - Pxmp2 protein_coding retained_intron MGP_C3HHeJ_T0072606.1 MGP_C3HHeJ_G0029513.1 mouse_genomes_project 5 105859035 105903452 + MGP_C3HHeJ_P0072606 Pkd2 protein_coding protein_coding MGP_C3HHeJ_T0072607.1 MGP_C3HHeJ_G0029513.1 mouse_genomes_project 5 105859155 105888020 + Pkd2 protein_coding processed_transcript MGP_C3HHeJ_T0072608.1 MGP_C3HHeJ_G0029513.1 mouse_genomes_project 5 105890468 105898969 + Pkd2 protein_coding retained_intron MGP_C3HHeJ_T0008042.1 MGP_C3HHeJ_G0006549.1 mouse_genomes_project 5 43661243 44085487 - lincRNA lincRNA MGP_C3HHeJ_T0008043.1 MGP_C3HHeJ_G0006549.1 mouse_genomes_project 5 43769971 43840589 - lincRNA lincRNA MGP_C3HHeJ_T0004654.1 MGP_C3HHeJ_G0004022.1 mouse_genomes_project 5 88404159 88408352 - Gm42794 antisense antisense MGP_C3HHeJ_T0073620.1 MGP_C3HHeJ_G0029720.1 mouse_genomes_project 5 124176408 124223838 + MGP_C3HHeJ_P0073620 Naa25 protein_coding protein_coding MGP_C3HHeJ_T0073621.1 MGP_C3HHeJ_G0029720.1 mouse_genomes_project 5 124176466 124220247 + MGP_C3HHeJ_P0073621 Naa25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073622.1 MGP_C3HHeJ_G0029720.1 mouse_genomes_project 5 124176467 124207953 + Naa25 protein_coding retained_intron MGP_C3HHeJ_T0073623.1 MGP_C3HHeJ_G0029720.1 mouse_genomes_project 5 124176477 124221358 + MGP_C3HHeJ_P0073623 Naa25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073625.1 MGP_C3HHeJ_G0029720.1 mouse_genomes_project 5 124220844 124225806 + MGP_C3HHeJ_P0073625 Naa25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073626.1 MGP_C3HHeJ_G0029720.1 mouse_genomes_project 5 124221429 124221943 + Naa25 protein_coding processed_transcript MGP_C3HHeJ_T0004562.1 MGP_C3HHeJ_G0003948.1 mouse_genomes_project 5 12152034 12179414 - Gm26954 antisense antisense MGP_C3HHeJ_T0004563.1 MGP_C3HHeJ_G0003948.1 mouse_genomes_project 5 12169004 12179399 - Gm26954 antisense antisense MGP_C3HHeJ_T0070926.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039057 34071140 + MGP_C3HHeJ_P0070926 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070927.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039068 34069946 + MGP_C3HHeJ_P0070927 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070928.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039095 34045312 + MGP_C3HHeJ_P0070928 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070929.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039096 34072699 + MGP_C3HHeJ_P0070929 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070930.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039109 34044007 + Acox3 protein_coding retained_intron MGP_C3HHeJ_T0070931.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039119 34069215 + MGP_C3HHeJ_P0070931 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070932.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34039540 34069208 + MGP_C3HHeJ_P0070932 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070933.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34058970 34065674 + MGP_C3HHeJ_P0070933 Acox3 protein_coding protein_coding MGP_C3HHeJ_T0070934.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34064285 34067259 + Acox3 protein_coding retained_intron MGP_C3HHeJ_T0070935.1 MGP_C3HHeJ_G0029180.1 mouse_genomes_project 5 34067438 34069226 + Acox3 protein_coding retained_intron MGP_C3HHeJ_T0014711.1 MGP_C3HHeJ_G0012815.1 mouse_genomes_project 5 20031624 20031996 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074014.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 126992566 127026549 + MGP_C3HHeJ_P0074014 Hip1r protein_coding protein_coding MGP_C3HHeJ_T0074015.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 126999839 127009568 + MGP_C3HHeJ_P0074015 Hip1r protein_coding protein_coding MGP_C3HHeJ_T0074016.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 127014753 127018390 + MGP_C3HHeJ_P0074016 Hip1r protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074017.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 127020400 127021998 + Hip1r protein_coding retained_intron MGP_C3HHeJ_T0074018.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 127020776 127022653 + MGP_C3HHeJ_P0074018 Hip1r protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074019.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 127021373 127022679 + Hip1r protein_coding retained_intron MGP_C3HHeJ_T0074020.1 MGP_C3HHeJ_G0029778.1 mouse_genomes_project 5 127021589 127022665 + Hip1r protein_coding retained_intron MGP_C3HHeJ_T0071237.1 MGP_C3HHeJ_G0029235.1 mouse_genomes_project 5 44197080 44203927 - Fam184b protein_coding retained_intron MGP_C3HHeJ_T0071238.1 MGP_C3HHeJ_G0029235.1 mouse_genomes_project 5 44197080 44303103 - MGP_C3HHeJ_P0071238 Fam184b protein_coding protein_coding MGP_C3HHeJ_T0075335.1 MGP_C3HHeJ_G0030028.1 mouse_genomes_project 5 147623722 147644595 + MGP_C3HHeJ_P0075335 Kdelr2 protein_coding protein_coding MGP_C3HHeJ_T0017974.1 MGP_C3HHeJ_G0015376.1 mouse_genomes_project 5 143071337 143074455 - Gm15672 processed_transcript processed_transcript MGP_C3HHeJ_T0073339.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117749214 117771279 + Msi1 protein_coding retained_intron MGP_C3HHeJ_T0073340.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117749263 117778013 + MGP_C3HHeJ_P0073340 Msi1 protein_coding protein_coding MGP_C3HHeJ_T0073341.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117750126 117773202 + MGP_C3HHeJ_P0073341 Msi1 protein_coding protein_coding MGP_C3HHeJ_T0073342.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117752913 117755161 + Msi1 protein_coding retained_intron MGP_C3HHeJ_T0073343.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117753260 117773195 + Msi1 protein_coding retained_intron MGP_C3HHeJ_T0073344.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117753809 117766021 + Msi1 protein_coding retained_intron MGP_C3HHeJ_T0073345.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117754505 117773179 + MGP_C3HHeJ_P0073345 Msi1 protein_coding protein_coding MGP_C3HHeJ_T0073346.1 MGP_C3HHeJ_G0029664.1 mouse_genomes_project 5 117755007 117766243 + Msi1 protein_coding retained_intron MGP_C3HHeJ_T0011520.1 MGP_C3HHeJ_G0009653.1 mouse_genomes_project 5 143817057 143817378 + Gm24146 misc_RNA misc_RNA MGP_C3HHeJ_T0001414.1 MGP_C3HHeJ_G0001344.1 mouse_genomes_project 5 10514305 10516802 - TEC TEC MGP_C3HHeJ_T0010619.1 MGP_C3HHeJ_G0008752.1 mouse_genomes_project 5 115427805 115427858 - Mir7229 miRNA miRNA MGP_C3HHeJ_T0004587.1 MGP_C3HHeJ_G0003967.1 mouse_genomes_project 5 30579115 30613871 - Gm36840 antisense antisense MGP_C3HHeJ_T0001803.1 MGP_C3HHeJ_G0001726.1 mouse_genomes_project 5 132701929 132702867 - TEC TEC MGP_C3HHeJ_T0001647.1 MGP_C3HHeJ_G0001572.1 mouse_genomes_project 5 72671959 72674066 - TEC TEC MGP_C3HHeJ_T0070845.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055492 33059044 - MGP_C3HHeJ_P0070845 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070846.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055496 33059067 - MGP_C3HHeJ_P0070846 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070847.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055497 33056578 - Mfsd10 protein_coding retained_intron MGP_C3HHeJ_T0070848.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055498 33056480 - Mfsd10 protein_coding retained_intron MGP_C3HHeJ_T0070849.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055499 33059047 - MGP_C3HHeJ_P0070849 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070850.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055575 33058658 - MGP_C3HHeJ_P0070850 Mfsd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070851.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055765 33056742 - Mfsd10 protein_coding retained_intron MGP_C3HHeJ_T0070852.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33055845 33057975 - Mfsd10 protein_coding retained_intron MGP_C3HHeJ_T0070853.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056164 33057376 - MGP_C3HHeJ_P0070853 Mfsd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070854.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056481 33056916 - MGP_C3HHeJ_P0070854 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070855.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056505 33057967 - MGP_C3HHeJ_P0070855 Mfsd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070856.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056701 33057606 - MGP_C3HHeJ_P0070856 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070857.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056782 33059044 - MGP_C3HHeJ_P0070857 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070858.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056907 33058692 - MGP_C3HHeJ_P0070858 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070859.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056914 33057474 - MGP_C3HHeJ_P0070859 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0070860.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056938 33057352 - Mfsd10 protein_coding retained_intron MGP_C3HHeJ_T0070861.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33056960 33058980 - MGP_C3HHeJ_P0070861 Mfsd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070862.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33057236 33058373 - Mfsd10 protein_coding processed_transcript MGP_C3HHeJ_T0070863.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33057463 33058386 - Mfsd10 protein_coding processed_transcript MGP_C3HHeJ_T0070864.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33057879 33058911 - Mfsd10 protein_coding retained_intron MGP_C3HHeJ_T0070865.1 MGP_C3HHeJ_G0029167.1 mouse_genomes_project 5 33058444 33058995 - MGP_C3HHeJ_P0070865 Mfsd10 protein_coding protein_coding MGP_C3HHeJ_T0001479.1 MGP_C3HHeJ_G0001406.1 mouse_genomes_project 5 35378216 35378349 + TEC TEC MGP_C3HHeJ_T0014944.1 MGP_C3HHeJ_G0013048.1 mouse_genomes_project 5 112901870 112902368 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071256.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867654 47200998 + MGP_C3HHeJ_P0071256 Slit2 protein_coding protein_coding MGP_C3HHeJ_T0071257.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867670 46874860 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071258.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867670 47071122 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071259.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867670 47197660 + MGP_C3HHeJ_P0071259 Slit2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071260.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867670 47198775 + MGP_C3HHeJ_P0071260 Slit2 protein_coding protein_coding MGP_C3HHeJ_T0071261.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867670 47198775 + MGP_C3HHeJ_P0071261 Slit2 protein_coding protein_coding MGP_C3HHeJ_T0071262.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867670 47198775 + MGP_C3HHeJ_P0071262 Slit2 protein_coding protein_coding MGP_C3HHeJ_T0071263.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867674 46971187 + Slit2 protein_coding processed_transcript MGP_C3HHeJ_T0071264.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46867693 46870185 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071265.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46869510 47061117 + Slit2 protein_coding processed_transcript MGP_C3HHeJ_T0071266.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 46872369 47078982 + MGP_C3HHeJ_P0071266 Slit2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071267.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47057113 47080189 + Slit2 protein_coding processed_transcript MGP_C3HHeJ_T0071268.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47062193 47066993 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071269.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47070065 47107973 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071270.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47077442 47120056 + Slit2 protein_coding processed_transcript MGP_C3HHeJ_T0071271.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47112726 47128388 + Slit2 protein_coding processed_transcript MGP_C3HHeJ_T0071272.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47121420 47176213 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071273.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47128436 47152842 + MGP_C3HHeJ_P0071273 Slit2 protein_coding protein_coding MGP_C3HHeJ_T0071274.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47136694 47139561 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071275.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47140125 47155927 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071276.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47149848 47152796 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071277.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47168524 47175065 + Slit2 protein_coding retained_intron MGP_C3HHeJ_T0071278.1 MGP_C3HHeJ_G0029238.1 mouse_genomes_project 5 47175043 47195776 + MGP_C3HHeJ_P0071278 Slit2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008252.1 MGP_C3HHeJ_G0006701.1 mouse_genomes_project 5 121644938 121651196 + 1700081H04Rik lincRNA lincRNA MGP_C3HHeJ_T0075540.1 MGP_C3HHeJ_G0030076.1 mouse_genomes_project 5 151427251 151429889 + MGP_C3HHeJ_P0075540 Rasl11a protein_coding protein_coding MGP_C3HHeJ_T0075541.1 MGP_C3HHeJ_G0030076.1 mouse_genomes_project 5 151427929 151429548 + Rasl11a protein_coding retained_intron MGP_C3HHeJ_T0014776.1 MGP_C3HHeJ_G0012880.1 mouse_genomes_project 5 40029945 40030414 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098153.1 MGP_C3HHeJ_G0036365.1 mouse_genomes_project 5 134854865 134854988 + Gm27266 rRNA rRNA MGP_C3HHeJ_T0001809.1 MGP_C3HHeJ_G0001732.1 mouse_genomes_project 5 133845917 133846345 - TEC TEC MGP_C3HHeJ_T0001608.1 MGP_C3HHeJ_G0001533.1 mouse_genomes_project 5 65449351 65450265 + TEC TEC MGP_C3HHeJ_T0071393.1 MGP_C3HHeJ_G0029260.1 mouse_genomes_project 5 61990062 61999894 - Arap2 protein_coding retained_intron MGP_C3HHeJ_T0071394.1 MGP_C3HHeJ_G0029260.1 mouse_genomes_project 5 61990063 62160038 - MGP_C3HHeJ_P0071394 Arap2 protein_coding protein_coding MGP_C3HHeJ_T0071395.1 MGP_C3HHeJ_G0029260.1 mouse_genomes_project 5 62023722 62028048 - Arap2 protein_coding retained_intron MGP_C3HHeJ_T0071396.1 MGP_C3HHeJ_G0029260.1 mouse_genomes_project 5 62031342 62035376 - Arap2 protein_coding retained_intron MGP_C3HHeJ_T0071397.1 MGP_C3HHeJ_G0029260.1 mouse_genomes_project 5 62066492 62073048 - Arap2 protein_coding retained_intron MGP_C3HHeJ_T0071398.1 MGP_C3HHeJ_G0029260.1 mouse_genomes_project 5 62098276 62123942 - Arap2 protein_coding processed_transcript MGP_C3HHeJ_T0071098.1 MGP_C3HHeJ_G0029209.1 mouse_genomes_project 5 36764480 36774584 + MGP_C3HHeJ_P0071098 Tmem128 protein_coding protein_coding MGP_C3HHeJ_T0071099.1 MGP_C3HHeJ_G0029209.1 mouse_genomes_project 5 36764666 36766607 + Tmem128 protein_coding retained_intron MGP_C3HHeJ_T0071100.1 MGP_C3HHeJ_G0029209.1 mouse_genomes_project 5 36764679 36772235 + MGP_C3HHeJ_P0071100 Tmem128 protein_coding protein_coding MGP_C3HHeJ_T0071101.1 MGP_C3HHeJ_G0029209.1 mouse_genomes_project 5 36764682 36769719 + Tmem128 protein_coding retained_intron MGP_C3HHeJ_T0071102.1 MGP_C3HHeJ_G0029209.1 mouse_genomes_project 5 36769222 36772232 + MGP_C3HHeJ_P0071102 Tmem128 protein_coding protein_coding MGP_C3HHeJ_T0102047.1 MGP_C3HHeJ_G0040012.1 mouse_genomes_project 5 96466539 96469603 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0071356.1 MGP_C3HHeJ_G0029253.1 mouse_genomes_project 5 52336499 52338008 + Smim20 protein_coding retained_intron MGP_C3HHeJ_T0071357.1 MGP_C3HHeJ_G0029253.1 mouse_genomes_project 5 52336554 52351942 + MGP_C3HHeJ_P0071357 Smim20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071358.1 MGP_C3HHeJ_G0029253.1 mouse_genomes_project 5 52336554 52351942 + MGP_C3HHeJ_P0071358 Smim20 protein_coding protein_coding MGP_C3HHeJ_T0071359.1 MGP_C3HHeJ_G0029253.1 mouse_genomes_project 5 52336593 52351942 + MGP_C3HHeJ_P0071359 Smim20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071360.1 MGP_C3HHeJ_G0029253.1 mouse_genomes_project 5 52336606 52338682 + Smim20 protein_coding retained_intron MGP_C3HHeJ_T0071361.1 MGP_C3HHeJ_G0029253.1 mouse_genomes_project 5 52350519 52351428 + Smim20 protein_coding retained_intron MGP_C3HHeJ_T0071798.1 MGP_C3HHeJ_G0029330.1 mouse_genomes_project 5 73958107 74033011 - MGP_C3HHeJ_P0071798 Usp46 protein_coding protein_coding MGP_C3HHeJ_T0071799.1 MGP_C3HHeJ_G0029330.1 mouse_genomes_project 5 73958368 74033022 - MGP_C3HHeJ_P0071799 Usp46 protein_coding protein_coding MGP_C3HHeJ_T0071800.1 MGP_C3HHeJ_G0029330.1 mouse_genomes_project 5 73961465 73999427 - Usp46 protein_coding processed_transcript MGP_C3HHeJ_T0071801.1 MGP_C3HHeJ_G0029330.1 mouse_genomes_project 5 73987787 73991973 - MGP_C3HHeJ_P0071801 Usp46 protein_coding protein_coding MGP_C3HHeJ_T0071802.1 MGP_C3HHeJ_G0029330.1 mouse_genomes_project 5 73991874 73996384 - Usp46 protein_coding retained_intron MGP_C3HHeJ_T0071803.1 MGP_C3HHeJ_G0029330.1 mouse_genomes_project 5 73991920 74030364 - MGP_C3HHeJ_P0071803 Usp46 protein_coding protein_coding MGP_C3HHeJ_T0075192.1 MGP_C3HHeJ_G0029999.1 mouse_genomes_project 5 144647392 144657135 + MGP_C3HHeJ_P0075192 Lfng protein_coding protein_coding MGP_C3HHeJ_T0075193.1 MGP_C3HHeJ_G0029999.1 mouse_genomes_project 5 144653098 144654922 + Lfng protein_coding processed_transcript MGP_C3HHeJ_T0075194.1 MGP_C3HHeJ_G0029999.1 mouse_genomes_project 5 144653274 144656264 + Lfng protein_coding retained_intron MGP_C3HHeJ_T0072288.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93142468 93204608 + MGP_C3HHeJ_P0072288 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072289.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93142471 93204805 + MGP_C3HHeJ_P0072289 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072290.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93142482 93157456 + Art3 protein_coding processed_transcript MGP_C3HHeJ_T0072291.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93142482 93227175 + MGP_C3HHeJ_P0072291 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072292.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93142482 93227172 + MGP_C3HHeJ_P0072292 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072297.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93188683 93204720 + MGP_C3HHeJ_P0072297 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072298.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93198560 93204691 + MGP_C3HHeJ_P0072298 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072299.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199436 93204399 + MGP_C3HHeJ_P0072299 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072300.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199519 93204269 + MGP_C3HHeJ_P0072300 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072301.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199524 93204650 + MGP_C3HHeJ_P0072301 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072302.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199816 93227169 + Art3 protein_coding processed_transcript MGP_C3HHeJ_T0072303.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199816 93227169 + MGP_C3HHeJ_P0072303 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072304.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199816 93227169 + MGP_C3HHeJ_P0072304 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072305.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199816 93227169 + MGP_C3HHeJ_P0072305 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072306.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199816 93227170 + MGP_C3HHeJ_P0072306 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072307.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93199816 93227169 + MGP_C3HHeJ_P0072307 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072308.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93204258 93227169 + MGP_C3HHeJ_P0072308 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072309.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93204732 93227170 + MGP_C3HHeJ_P0072309 Art3 protein_coding protein_coding MGP_C3HHeJ_T0072310.1 MGP_C3HHeJ_G0029448.1 mouse_genomes_project 5 93214177 93226994 + MGP_C3HHeJ_P0072310 Art3 protein_coding protein_coding MGP_C3HHeJ_T0014980.1 MGP_C3HHeJ_G0013084.1 mouse_genomes_project 5 139101431 139101789 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0071239.1 MGP_C3HHeJ_G0029236.1 mouse_genomes_project 5 44337869 44373214 + MGP_C3HHeJ_P0071239 Ncapg protein_coding protein_coding MGP_C3HHeJ_T0071240.1 MGP_C3HHeJ_G0029236.1 mouse_genomes_project 5 44347579 44372793 + Ncapg protein_coding retained_intron MGP_C3HHeJ_T0071241.1 MGP_C3HHeJ_G0029236.1 mouse_genomes_project 5 44349430 44351598 + Ncapg protein_coding retained_intron MGP_C3HHeJ_T0071242.1 MGP_C3HHeJ_G0029236.1 mouse_genomes_project 5 44349481 44372739 + Ncapg protein_coding retained_intron MGP_C3HHeJ_T0071243.1 MGP_C3HHeJ_G0029236.1 mouse_genomes_project 5 44363860 44369588 + Ncapg protein_coding retained_intron MGP_C3HHeJ_T0071246.1 MGP_C3HHeJ_G0029236.1 mouse_genomes_project 5 44371325 44372736 + Ncapg protein_coding retained_intron MGP_C3HHeJ_T0004786.1 MGP_C3HHeJ_G0004112.1 mouse_genomes_project 5 138556214 138558017 - antisense antisense MGP_C3HHeJ_T0071203.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42785728 42837663 - MGP_C3HHeJ_P0071203 Tapt1 protein_coding protein_coding MGP_C3HHeJ_T0071204.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42785733 42837658 - MGP_C3HHeJ_P0071204 Tapt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071205.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42787070 42793391 - Tapt1 protein_coding retained_intron MGP_C3HHeJ_T0071206.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42794797 42802677 - Tapt1 protein_coding retained_intron MGP_C3HHeJ_T0071207.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42799246 42829186 - MGP_C3HHeJ_P0071207 Tapt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071208.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42799261 42815316 - Tapt1 protein_coding retained_intron MGP_C3HHeJ_T0071209.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42802999 42815486 - Tapt1 protein_coding retained_intron MGP_C3HHeJ_T0071210.1 MGP_C3HHeJ_G0029229.1 mouse_genomes_project 5 42828802 42837667 - Tapt1 protein_coding retained_intron MGP_C3HHeJ_T0073203.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116655741 116664799 + MGP_C3HHeJ_P0073203 Mvk protein_coding protein_coding MGP_C3HHeJ_T0073204.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116655758 116672120 + MGP_C3HHeJ_P0073204 Mvk protein_coding protein_coding MGP_C3HHeJ_T0073205.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116655766 116672227 + Mvk protein_coding retained_intron MGP_C3HHeJ_T0073206.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116655775 116664799 + MGP_C3HHeJ_P0073206 Mvk protein_coding protein_coding MGP_C3HHeJ_T0073207.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116655775 116667128 + MGP_C3HHeJ_P0073207 Mvk protein_coding protein_coding MGP_C3HHeJ_T0073208.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116655778 116672234 + MGP_C3HHeJ_P0073208 Mvk protein_coding protein_coding MGP_C3HHeJ_T0073209.1 MGP_C3HHeJ_G0029635.1 mouse_genomes_project 5 116664068 116672215 + MGP_C3HHeJ_P0073209 Mvk protein_coding protein_coding MGP_C3HHeJ_T0073592.1 MGP_C3HHeJ_G0029715.1 mouse_genomes_project 5 123687039 123757850 - MGP_C3HHeJ_P0073592 Rph3a protein_coding protein_coding MGP_C3HHeJ_T0073593.1 MGP_C3HHeJ_G0029715.1 mouse_genomes_project 5 123687039 123757308 - MGP_C3HHeJ_P0073593 Rph3a protein_coding protein_coding MGP_C3HHeJ_T0073594.1 MGP_C3HHeJ_G0029715.1 mouse_genomes_project 5 123688383 123756314 - MGP_C3HHeJ_P0073594 Rph3a protein_coding protein_coding MGP_C3HHeJ_T0073595.1 MGP_C3HHeJ_G0029715.1 mouse_genomes_project 5 123719867 123757862 - MGP_C3HHeJ_P0073595 Rph3a protein_coding protein_coding MGP_C3HHeJ_T0014815.1 MGP_C3HHeJ_G0012919.1 mouse_genomes_project 5 59512844 59513478 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014752.1 MGP_C3HHeJ_G0012856.1 mouse_genomes_project 5 30435696 30436279 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074124.1 MGP_C3HHeJ_G0029795.1 mouse_genomes_project 5 127636172 127655976 + MGP_C3HHeJ_P0074124 Gtf2h3 protein_coding protein_coding MGP_C3HHeJ_T0074125.1 MGP_C3HHeJ_G0029795.1 mouse_genomes_project 5 127636174 127638705 + Gtf2h3 protein_coding retained_intron MGP_C3HHeJ_T0074126.1 MGP_C3HHeJ_G0029795.1 mouse_genomes_project 5 127636198 127650923 + Gtf2h3 protein_coding retained_intron MGP_C3HHeJ_T0074127.1 MGP_C3HHeJ_G0029795.1 mouse_genomes_project 5 127640878 127653892 + Gtf2h3 protein_coding retained_intron MGP_C3HHeJ_T0074128.1 MGP_C3HHeJ_G0029795.1 mouse_genomes_project 5 127648674 127654883 + Gtf2h3 protein_coding retained_intron MGP_C3HHeJ_T0074129.1 MGP_C3HHeJ_G0029795.1 mouse_genomes_project 5 127652560 127653901 + Gtf2h3 protein_coding retained_intron MGP_C3HHeJ_T0071585.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66374664 66616170 + Limch1 protein_coding retained_intron MGP_C3HHeJ_T0071586.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66374704 66377233 + Limch1 protein_coding retained_intron MGP_C3HHeJ_T0071587.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66374720 66692265 + MGP_C3HHeJ_P0071587 Limch1 protein_coding protein_coding MGP_C3HHeJ_T0071588.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66374726 66594684 + MGP_C3HHeJ_P0071588 Limch1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071589.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66374747 66693356 + MGP_C3HHeJ_P0071589 Limch1 protein_coding protein_coding MGP_C3HHeJ_T0071590.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66534417 66610661 + MGP_C3HHeJ_P0071590 Limch1 protein_coding protein_coding MGP_C3HHeJ_T0071591.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66609512 66690884 + Limch1 protein_coding processed_transcript MGP_C3HHeJ_T0071592.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66609923 66693347 + MGP_C3HHeJ_P0071592 Limch1 protein_coding protein_coding MGP_C3HHeJ_T0071593.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66610072 66673476 + Limch1 protein_coding retained_intron MGP_C3HHeJ_T0071594.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66610084 66640188 + MGP_C3HHeJ_P0071594 Limch1 protein_coding protein_coding MGP_C3HHeJ_T0071595.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66610157 66616423 + Limch1 protein_coding retained_intron MGP_C3HHeJ_T0071596.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66610468 66640218 + MGP_C3HHeJ_P0071596 Limch1 protein_coding protein_coding MGP_C3HHeJ_T0071597.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66618525 66640664 + Limch1 protein_coding processed_transcript MGP_C3HHeJ_T0071598.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66638516 66640769 + Limch1 protein_coding retained_intron MGP_C3HHeJ_T0071599.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66680534 66690836 + Limch1 protein_coding processed_transcript MGP_C3HHeJ_T0071600.1 MGP_C3HHeJ_G0029291.1 mouse_genomes_project 5 66680589 66690831 + MGP_C3HHeJ_P0071600 Limch1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069792.1 MGP_C3HHeJ_G0028985.1 mouse_genomes_project 5 5649657 5786128 - MGP_C3HHeJ_P0069792 Rundc3b protein_coding protein_coding MGP_C3HHeJ_T0069793.1 MGP_C3HHeJ_G0028985.1 mouse_genomes_project 5 5651590 5786128 - MGP_C3HHeJ_P0069793 Rundc3b protein_coding protein_coding MGP_C3HHeJ_T0014868.1 MGP_C3HHeJ_G0012972.1 mouse_genomes_project 5 87721321 87722873 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001521.1 MGP_C3HHeJ_G0001448.1 mouse_genomes_project 5 47172928 47174686 + TEC TEC MGP_C3HHeJ_T0001716.1 MGP_C3HHeJ_G0001640.1 mouse_genomes_project 5 109571548 109572713 + TEC TEC MGP_C3HHeJ_T0073294.1 MGP_C3HHeJ_G0029653.1 mouse_genomes_project 5 117416342 117430697 - MGP_C3HHeJ_P0073294 Unc119b protein_coding protein_coding MGP_C3HHeJ_T0073295.1 MGP_C3HHeJ_G0029653.1 mouse_genomes_project 5 117419041 117421597 - Unc119b protein_coding retained_intron MGP_C3HHeJ_T0073296.1 MGP_C3HHeJ_G0029653.1 mouse_genomes_project 5 117425344 117430647 - Unc119b protein_coding retained_intron MGP_C3HHeJ_T0074711.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139788571 139901518 - MGP_C3HHeJ_P0074711 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074712.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139788571 140116871 - MGP_C3HHeJ_P0074712 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074713.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139788571 140116887 - MGP_C3HHeJ_P0074713 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074714.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139788946 140116901 - MGP_C3HHeJ_P0074714 Cux1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074715.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139790910 140116886 - MGP_C3HHeJ_P0074715 Cux1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074716.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139806705 140117068 - MGP_C3HHeJ_P0074716 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074717.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139808657 140116869 - MGP_C3HHeJ_P0074717 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074718.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139815658 140115958 - MGP_C3HHeJ_P0074718 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074719.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139815689 140115039 - MGP_C3HHeJ_P0074719 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074720.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139815696 139843665 - Cux1 protein_coding processed_transcript MGP_C3HHeJ_T0074721.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139815994 140116842 - MGP_C3HHeJ_P0074721 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074722.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139854303 139906058 - MGP_C3HHeJ_P0074722 Cux1 protein_coding protein_coding MGP_C3HHeJ_T0074723.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 139905098 140116875 - Cux1 protein_coding retained_intron MGP_C3HHeJ_T0074724.1 MGP_C3HHeJ_G0029900.1 mouse_genomes_project 5 140031758 140117113 - Cux1 protein_coding retained_intron MGP_C3HHeJ_T0014989.1 MGP_C3HHeJ_G0013093.1 mouse_genomes_project 5 141552499 141552887 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099498.1 MGP_C3HHeJ_G0037692.1 mouse_genomes_project 5 155577490 155577596 + Gm24630 snRNA snRNA MGP_C3HHeJ_T0014793.1 MGP_C3HHeJ_G0012897.1 mouse_genomes_project 5 50030537 50031018 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008348.1 MGP_C3HHeJ_G0006765.1 mouse_genomes_project 5 147613524 147617293 - Gm42504 lincRNA lincRNA MGP_C3HHeJ_T0073930.1 MGP_C3HHeJ_G0029765.1 mouse_genomes_project 5 126501051 126520503 + MGP_C3HHeJ_P0073930 Lrrc43 protein_coding protein_coding MGP_C3HHeJ_T0073931.1 MGP_C3HHeJ_G0029765.1 mouse_genomes_project 5 126501071 126520516 + MGP_C3HHeJ_P0073931 Lrrc43 protein_coding protein_coding MGP_C3HHeJ_T0073932.1 MGP_C3HHeJ_G0029765.1 mouse_genomes_project 5 126501073 126520509 + MGP_C3HHeJ_P0073932 Lrrc43 protein_coding protein_coding MGP_C3HHeJ_T0004661.1 MGP_C3HHeJ_G0004028.1 mouse_genomes_project 5 93097466 93110951 + Gm43599 antisense antisense MGP_C3HHeJ_T0001831.1 MGP_C3HHeJ_G0001754.1 mouse_genomes_project 5 135696082 135697356 - TEC TEC MGP_C3HHeJ_T0001553.1 MGP_C3HHeJ_G0001479.1 mouse_genomes_project 5 50502244 50505661 - TEC TEC MGP_C3HHeJ_T0074434.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704090 137769129 - MGP_C3HHeJ_P0074434 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074435.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704090 137769129 - MGP_C3HHeJ_P0074435 Gtf2ird1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074436.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704092 137817671 - MGP_C3HHeJ_P0074436 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074437.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704092 137817211 - MGP_C3HHeJ_P0074437 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074438.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704097 137817643 - MGP_C3HHeJ_P0074438 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074439.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704099 137710956 - MGP_C3HHeJ_P0074439 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074440.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704105 137817671 - MGP_C3HHeJ_P0074440 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074441.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704115 137817539 - MGP_C3HHeJ_P0074441 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074442.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704115 137817531 - MGP_C3HHeJ_P0074442 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074443.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704115 137817531 - MGP_C3HHeJ_P0074443 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074444.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704133 137817544 - MGP_C3HHeJ_P0074444 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074445.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137704222 137726242 - MGP_C3HHeJ_P0074445 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074446.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137705009 137817544 - MGP_C3HHeJ_P0074446 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074447.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137705071 137817647 - MGP_C3HHeJ_P0074447 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074448.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137705090 137817541 - MGP_C3HHeJ_P0074448 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074449.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137706611 137708634 - Gtf2ird1 protein_coding retained_intron MGP_C3HHeJ_T0074450.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137706674 137734842 - MGP_C3HHeJ_P0074450 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074451.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137709316 137738251 - MGP_C3HHeJ_P0074451 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074452.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137711013 137738230 - MGP_C3HHeJ_P0074452 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074453.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137724691 137817232 - Gtf2ird1 protein_coding retained_intron MGP_C3HHeJ_T0074454.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137732353 137745490 - MGP_C3HHeJ_P0074454 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074455.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137732353 137745490 - MGP_C3HHeJ_P0074455 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074456.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137732562 137734273 - Gtf2ird1 protein_coding retained_intron MGP_C3HHeJ_T0074457.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137732565 137745490 - MGP_C3HHeJ_P0074457 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074458.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137733549 137745490 - MGP_C3HHeJ_P0074458 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074459.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137734590 137745394 - Gtf2ird1 protein_coding retained_intron MGP_C3HHeJ_T0074460.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137734706 137751893 - Gtf2ird1 protein_coding retained_intron MGP_C3HHeJ_T0074461.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137740641 137767210 - MGP_C3HHeJ_P0074461 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0074462.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137752607 137817634 - Gtf2ird1 protein_coding retained_intron MGP_C3HHeJ_T0074463.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137754500 137817629 - Gtf2ird1 protein_coding processed_transcript MGP_C3HHeJ_T0074464.1 MGP_C3HHeJ_G0029850.1 mouse_genomes_project 5 137760781 137816905 - MGP_C3HHeJ_P0074464 Gtf2ird1 protein_coding protein_coding MGP_C3HHeJ_T0072784.1 MGP_C3HHeJ_G0029549.1 mouse_genomes_project 5 109868085 109901367 + MGP_C3HHeJ_P0072784 Ccdc18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072785.1 MGP_C3HHeJ_G0029549.1 mouse_genomes_project 5 109868124 109982506 + MGP_C3HHeJ_P0072785 Ccdc18 protein_coding protein_coding MGP_C3HHeJ_T0072786.1 MGP_C3HHeJ_G0029549.1 mouse_genomes_project 5 109868156 109874603 + Ccdc18 protein_coding retained_intron MGP_C3HHeJ_T0072787.1 MGP_C3HHeJ_G0029549.1 mouse_genomes_project 5 109901552 109919157 + Ccdc18 protein_coding processed_transcript MGP_C3HHeJ_T0075053.1 MGP_C3HHeJ_G0029969.1 mouse_genomes_project 5 142659664 142717291 + MGP_C3HHeJ_P0075053 Fam20c protein_coding protein_coding MGP_C3HHeJ_T0075054.1 MGP_C3HHeJ_G0029969.1 mouse_genomes_project 5 142660233 142716595 + MGP_C3HHeJ_P0075054 Fam20c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075055.1 MGP_C3HHeJ_G0029969.1 mouse_genomes_project 5 142660237 142664000 + Fam20c protein_coding retained_intron MGP_C3HHeJ_T0075056.1 MGP_C3HHeJ_G0029969.1 mouse_genomes_project 5 142692639 142716373 + Fam20c protein_coding processed_transcript MGP_C3HHeJ_T0075057.1 MGP_C3HHeJ_G0029969.1 mouse_genomes_project 5 142694913 142714599 + Fam20c protein_coding processed_transcript MGP_C3HHeJ_T0075058.1 MGP_C3HHeJ_G0029969.1 mouse_genomes_project 5 142714449 142716619 + Fam20c protein_coding retained_intron MGP_C3HHeJ_T0001830.1 MGP_C3HHeJ_G0001753.1 mouse_genomes_project 5 135690941 135693803 - TEC TEC MGP_C3HHeJ_T0071244.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44369838 44528440 - MGP_C3HHeJ_P0071244 Lcorl protein_coding protein_coding MGP_C3HHeJ_T0071245.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44369841 44528292 - MGP_C3HHeJ_P0071245 Lcorl protein_coding protein_coding MGP_C3HHeJ_T0071247.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44373117 44527388 - MGP_C3HHeJ_P0071247 Lcorl protein_coding protein_coding MGP_C3HHeJ_T0071248.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44374121 44395949 - Lcorl protein_coding processed_transcript MGP_C3HHeJ_T0071249.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44392311 44400224 - Lcorl protein_coding retained_intron MGP_C3HHeJ_T0071250.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44406103 44528322 - MGP_C3HHeJ_P0071250 Lcorl protein_coding protein_coding MGP_C3HHeJ_T0071251.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44419891 44528292 - MGP_C3HHeJ_P0071251 Lcorl protein_coding protein_coding MGP_C3HHeJ_T0071252.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44419912 44528306 - MGP_C3HHeJ_P0071252 Lcorl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071253.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44449228 44528326 - Lcorl protein_coding processed_transcript MGP_C3HHeJ_T0071254.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44451165 44528440 - Lcorl protein_coding retained_intron MGP_C3HHeJ_T0071255.1 MGP_C3HHeJ_G0029237.1 mouse_genomes_project 5 44451335 44528313 - MGP_C3HHeJ_P0071255 Lcorl protein_coding protein_coding MGP_C3HHeJ_T0070551.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29510579 29542152 + MGP_C3HHeJ_P0070551 Gckr protein_coding protein_coding MGP_C3HHeJ_T0070552.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29510690 29542133 + Gckr protein_coding retained_intron MGP_C3HHeJ_T0070553.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29510717 29542140 + MGP_C3HHeJ_P0070553 Gckr protein_coding protein_coding MGP_C3HHeJ_T0070554.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29510748 29513712 + MGP_C3HHeJ_P0070554 Gckr protein_coding protein_coding MGP_C3HHeJ_T0070555.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29511832 29519648 + Gckr protein_coding retained_intron MGP_C3HHeJ_T0070556.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29512637 29518554 + Gckr protein_coding retained_intron MGP_C3HHeJ_T0070557.1 MGP_C3HHeJ_G0029122.1 mouse_genomes_project 5 29541068 29542135 + Gckr protein_coding retained_intron MGP_C3HHeJ_T0073101.1 MGP_C3HHeJ_G0029616.1 mouse_genomes_project 5 115835673 115877768 - MGP_C3HHeJ_P0073101 1700069L16Rik protein_coding protein_coding MGP_C3HHeJ_T0073102.1 MGP_C3HHeJ_G0029616.1 mouse_genomes_project 5 115845006 115849096 - 1700069L16Rik protein_coding processed_transcript MGP_C3HHeJ_T0073103.1 MGP_C3HHeJ_G0029616.1 mouse_genomes_project 5 115848354 115877745 - MGP_C3HHeJ_P0073103 1700069L16Rik protein_coding protein_coding MGP_C3HHeJ_T0008130.1 MGP_C3HHeJ_G0006623.1 mouse_genomes_project 5 98552884 98807483 + 4930467D21Rik lincRNA lincRNA MGP_C3HHeJ_T0008131.1 MGP_C3HHeJ_G0006623.1 mouse_genomes_project 5 98552914 98752049 + 4930467D21Rik lincRNA lincRNA MGP_C3HHeJ_T0072790.1 MGP_C3HHeJ_G0029551.1 mouse_genomes_project 5 110091468 110129738 + MGP_C3HHeJ_P0072790 Pigg protein_coding protein_coding MGP_C3HHeJ_T0072791.1 MGP_C3HHeJ_G0029551.1 mouse_genomes_project 5 110091468 110130860 + MGP_C3HHeJ_P0072791 Pigg protein_coding protein_coding MGP_C3HHeJ_T0072792.1 MGP_C3HHeJ_G0029551.1 mouse_genomes_project 5 110091495 110129743 + MGP_C3HHeJ_P0072792 Pigg protein_coding protein_coding MGP_C3HHeJ_T0074503.1 MGP_C3HHeJ_G0029859.1 mouse_genomes_project 5 138332002 138333280 - MGP_C3HHeJ_P0074503 Cldn13 protein_coding protein_coding MGP_C3HHeJ_T0073426.1 MGP_C3HHeJ_G0029674.1 mouse_genomes_project 5 118404618 118453039 - MGP_C3HHeJ_P0073426 Tmem233 protein_coding protein_coding MGP_C3HHeJ_T0010640.1 MGP_C3HHeJ_G0008773.1 mouse_genomes_project 5 140576728 140576837 + Mir702 miRNA miRNA MGP_C3HHeJ_T0074652.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514770 139555981 + MGP_C3HHeJ_P0074652 Dtx2 protein_coding protein_coding MGP_C3HHeJ_T0074653.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514781 139555973 + MGP_C3HHeJ_P0074653 Dtx2 protein_coding protein_coding MGP_C3HHeJ_T0074654.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514814 139555980 + MGP_C3HHeJ_P0074654 Dtx2 protein_coding protein_coding MGP_C3HHeJ_T0074655.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514817 139534441 + MGP_C3HHeJ_P0074655 Dtx2 protein_coding protein_coding MGP_C3HHeJ_T0074656.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514828 139555975 + MGP_C3HHeJ_P0074656 Dtx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074657.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514847 139555973 + MGP_C3HHeJ_P0074657 Dtx2 protein_coding protein_coding MGP_C3HHeJ_T0074658.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139514852 139532341 + MGP_C3HHeJ_P0074658 Dtx2 protein_coding protein_coding MGP_C3HHeJ_T0074659.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139515443 139516744 + Dtx2 protein_coding processed_transcript MGP_C3HHeJ_T0074660.1 MGP_C3HHeJ_G0029890.1 mouse_genomes_project 5 139541778 139555973 + Dtx2 protein_coding retained_intron MGP_C3HHeJ_T0070067.1 MGP_C3HHeJ_G0029036.1 mouse_genomes_project 5 22329627 22337630 - MGP_C3HHeJ_P0070067 Atg9b protein_coding protein_coding MGP_C3HHeJ_T0070068.1 MGP_C3HHeJ_G0029036.1 mouse_genomes_project 5 22330066 22336122 - Atg9b protein_coding processed_transcript MGP_C3HHeJ_T0070069.1 MGP_C3HHeJ_G0029036.1 mouse_genomes_project 5 22332551 22333413 - Atg9b protein_coding processed_transcript MGP_C3HHeJ_T0014983.1 MGP_C3HHeJ_G0013087.1 mouse_genomes_project 5 139747657 139748432 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0074267.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927862 132934922 + MGP_C3HHeJ_P0074267 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074268.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927868 132930846 + MGP_C3HHeJ_P0074268 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074269.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927869 132930763 + MGP_C3HHeJ_P0074269 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074270.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927874 132930385 + MGP_C3HHeJ_P0074270 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074271.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927876 132931241 + MGP_C3HHeJ_P0074271 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074272.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927881 132931057 + MGP_C3HHeJ_P0074272 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074273.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927883 132929711 + Mrps17 protein_coding retained_intron MGP_C3HHeJ_T0074274.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927899 132930420 + MGP_C3HHeJ_P0074274 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074275.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927923 132930656 + MGP_C3HHeJ_P0074275 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074276.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132927942 132930813 + MGP_C3HHeJ_P0074276 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0074277.1 MGP_C3HHeJ_G0029823.1 mouse_genomes_project 5 132928062 132929199 + MGP_C3HHeJ_P0074277 Mrps17 protein_coding protein_coding MGP_C3HHeJ_T0073001.1 MGP_C3HHeJ_G0029594.1 mouse_genomes_project 5 113320008 113372000 + MGP_C3HHeJ_P0073001 Pitpnb protein_coding protein_coding MGP_C3HHeJ_T0073002.1 MGP_C3HHeJ_G0029594.1 mouse_genomes_project 5 113320052 113372000 + MGP_C3HHeJ_P0073002 Pitpnb protein_coding protein_coding MGP_C3HHeJ_T0073003.1 MGP_C3HHeJ_G0029594.1 mouse_genomes_project 5 113320059 113372006 + MGP_C3HHeJ_P0073003 Pitpnb protein_coding unknown_likely_coding MGP_C3HHeJ_T0073004.1 MGP_C3HHeJ_G0029594.1 mouse_genomes_project 5 113335576 113366754 + Pitpnb protein_coding processed_transcript MGP_C3HHeJ_T0073005.1 MGP_C3HHeJ_G0029594.1 mouse_genomes_project 5 113363809 113367344 + Pitpnb protein_coding retained_intron MGP_C3HHeJ_T0074836.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141159909 141162535 - MGP_C3HHeJ_P0074836 Gnb2 protein_coding protein_coding MGP_C3HHeJ_T0074837.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141159911 141160704 - Gnb2 protein_coding retained_intron MGP_C3HHeJ_T0074838.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141159940 141163542 - MGP_C3HHeJ_P0074838 Gnb2 protein_coding protein_coding MGP_C3HHeJ_T0074839.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160286 141164963 - MGP_C3HHeJ_P0074839 Gnb2 protein_coding protein_coding MGP_C3HHeJ_T0074840.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160348 141162683 - Gnb2 protein_coding retained_intron MGP_C3HHeJ_T0074841.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160555 141161646 - Gnb2 protein_coding retained_intron MGP_C3HHeJ_T0074842.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160579 141161604 - Gnb2 protein_coding retained_intron MGP_C3HHeJ_T0074843.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160656 141161560 - Gnb2 protein_coding retained_intron MGP_C3HHeJ_T0074844.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160803 141162822 - MGP_C3HHeJ_P0074844 Gnb2 protein_coding protein_coding MGP_C3HHeJ_T0074845.1 MGP_C3HHeJ_G0029924.1 mouse_genomes_project 5 141160921 141163736 - MGP_C3HHeJ_P0074845 Gnb2 protein_coding protein_coding MGP_C3HHeJ_T0001753.1 MGP_C3HHeJ_G0001677.1 mouse_genomes_project 5 121115213 121117631 + TEC TEC MGP_C3HHeJ_T0099481.1 MGP_C3HHeJ_G0037675.1 mouse_genomes_project 5 124132841 124132999 + Gm24671 snRNA snRNA MGP_C3HHeJ_T0074599.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139096919 139110989 + MGP_C3HHeJ_P0074599 Rhbdd2 protein_coding protein_coding MGP_C3HHeJ_T0074600.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139096955 139111061 + MGP_C3HHeJ_P0074600 Rhbdd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074601.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139097005 139101911 + Rhbdd2 protein_coding processed_transcript MGP_C3HHeJ_T0074602.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139097017 139099917 + Rhbdd2 protein_coding retained_intron MGP_C3HHeJ_T0074603.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139097024 139100847 + Rhbdd2 protein_coding retained_intron MGP_C3HHeJ_T0074604.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139099403 139104591 + MGP_C3HHeJ_P0074604 Rhbdd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074605.1 MGP_C3HHeJ_G0029880.1 mouse_genomes_project 5 139100833 139109140 + Rhbdd2 protein_coding retained_intron MGP_C3HHeJ_T0099493.1 MGP_C3HHeJ_G0037687.1 mouse_genomes_project 5 143389135 143389242 + Gm26285 snRNA snRNA MGP_C3HHeJ_T0014894.1 MGP_C3HHeJ_G0012998.1 mouse_genomes_project 5 99226439 99226749 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014788.1 MGP_C3HHeJ_G0012892.1 mouse_genomes_project 5 47558878 47560243 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001749.1 MGP_C3HHeJ_G0001673.1 mouse_genomes_project 5 119972200 119973156 + TEC TEC MGP_C3HHeJ_T0074834.1 MGP_C3HHeJ_G0029923.1 mouse_genomes_project 5 141149204 141159718 + MGP_C3HHeJ_P0074834 protein_coding unknown_likely_coding MGP_C3HHeJ_T0074835.1 MGP_C3HHeJ_G0029923.1 mouse_genomes_project 5 141150335 141152164 + MGP_C3HHeJ_P0074835 protein_coding protein_coding MGP_C3HHeJ_T0004718.1 MGP_C3HHeJ_G0004065.1 mouse_genomes_project 5 117755575 117756154 - 4930430O22Rik antisense antisense MGP_C3HHeJ_T0004719.1 MGP_C3HHeJ_G0004065.1 mouse_genomes_project 5 117755577 117756116 - 4930430O22Rik antisense antisense MGP_C3HHeJ_T0014963.1 MGP_C3HHeJ_G0013067.1 mouse_genomes_project 5 124253087 124253913 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008262.1 MGP_C3HHeJ_G0006709.1 mouse_genomes_project 5 122491814 122493901 + Gm43269 lincRNA lincRNA MGP_C3HHeJ_T0001734.1 MGP_C3HHeJ_G0001658.1 mouse_genomes_project 5 115427498 115428796 + TEC TEC MGP_C3HHeJ_T0074586.1 MGP_C3HHeJ_G0029876.1 mouse_genomes_project 5 138830748 138850283 - MGP_C3HHeJ_P0074586 Pom121 protein_coding protein_coding MGP_C3HHeJ_T0001741.1 MGP_C3HHeJ_G0001665.1 mouse_genomes_project 5 117746731 117748991 - TEC TEC MGP_C3HHeJ_T0001822.1 MGP_C3HHeJ_G0001745.1 mouse_genomes_project 5 135221542 135223875 - TEC TEC MGP_C3HHeJ_T0001652.1 MGP_C3HHeJ_G0001576.1 mouse_genomes_project 5 73208215 73209093 + TEC TEC MGP_C3HHeJ_T0073465.1 MGP_C3HHeJ_G0029683.1 mouse_genomes_project 5 119815354 119825901 - Rfc5 protein_coding retained_intron MGP_C3HHeJ_T0073466.1 MGP_C3HHeJ_G0029683.1 mouse_genomes_project 5 119815354 119825926 - MGP_C3HHeJ_P0073466 Rfc5 protein_coding protein_coding MGP_C3HHeJ_T0073467.1 MGP_C3HHeJ_G0029683.1 mouse_genomes_project 5 119816496 119817731 - Rfc5 protein_coding retained_intron MGP_C3HHeJ_T0073468.1 MGP_C3HHeJ_G0029683.1 mouse_genomes_project 5 119816720 119817096 - Rfc5 protein_coding retained_intron MGP_C3HHeJ_T0073469.1 MGP_C3HHeJ_G0029683.1 mouse_genomes_project 5 119818595 119823711 - Rfc5 protein_coding retained_intron MGP_C3HHeJ_T0073470.1 MGP_C3HHeJ_G0029683.1 mouse_genomes_project 5 119823160 119825924 - MGP_C3HHeJ_P0073470 Rfc5 protein_coding protein_coding MGP_C3HHeJ_T0101424.1 MGP_C3HHeJ_G0039453.1 mouse_genomes_project 5 72386288 72401513 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0074901.1 MGP_C3HHeJ_G0029933.1 mouse_genomes_project 5 141290117 141292596 - MGP_C3HHeJ_P0074901 Irs3 protein_coding protein_coding MGP_C3HHeJ_T0074902.1 MGP_C3HHeJ_G0029933.1 mouse_genomes_project 5 141290118 141292773 - MGP_C3HHeJ_P0074902 Irs3 protein_coding protein_coding MGP_C3HHeJ_T0070151.1 MGP_C3HHeJ_G0029050.1 mouse_genomes_project 5 22651180 22676098 + MGP_C3HHeJ_P0070151 Nub1 protein_coding protein_coding MGP_C3HHeJ_T0070152.1 MGP_C3HHeJ_G0029050.1 mouse_genomes_project 5 22651472 22676100 + MGP_C3HHeJ_P0070152 Nub1 protein_coding protein_coding MGP_C3HHeJ_T0070153.1 MGP_C3HHeJ_G0029050.1 mouse_genomes_project 5 22651635 22676098 + Nub1 protein_coding retained_intron MGP_C3HHeJ_T0073565.1 MGP_C3HHeJ_G0029706.1 mouse_genomes_project 5 123269876 123275963 + MGP_C3HHeJ_P0073565 Rasal1 protein_coding protein_coding MGP_C3HHeJ_T0073566.1 MGP_C3HHeJ_G0029706.1 mouse_genomes_project 5 123269886 123306571 + MGP_C3HHeJ_P0073566 Rasal1 protein_coding protein_coding MGP_C3HHeJ_T0073567.1 MGP_C3HHeJ_G0029706.1 mouse_genomes_project 5 123270252 123306571 + MGP_C3HHeJ_P0073567 Rasal1 protein_coding protein_coding MGP_C3HHeJ_T0073568.1 MGP_C3HHeJ_G0029706.1 mouse_genomes_project 5 123274429 123280709 + Rasal1 protein_coding processed_transcript MGP_C3HHeJ_T0073569.1 MGP_C3HHeJ_G0029706.1 mouse_genomes_project 5 123305566 123306280 + Rasal1 protein_coding retained_intron MGP_C3HHeJ_T0008308.1 MGP_C3HHeJ_G0006736.1 mouse_genomes_project 5 131585408 131589648 + Gm42495 lincRNA lincRNA MGP_C3HHeJ_T0008279.1 MGP_C3HHeJ_G0006718.1 mouse_genomes_project 5 127053421 127108317 + Gm34086 lincRNA lincRNA MGP_C3HHeJ_T0001620.1 MGP_C3HHeJ_G0001545.1 mouse_genomes_project 5 66140242 66142181 - TEC TEC MGP_C3HHeJ_T0001675.1 MGP_C3HHeJ_G0001599.1 mouse_genomes_project 5 90188379 90190514 + TEC TEC MGP_C3HHeJ_T0014702.1 MGP_C3HHeJ_G0012806.1 mouse_genomes_project 5 18809009 18809383 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007954.1 MGP_C3HHeJ_G0006490.1 mouse_genomes_project 5 2624494 2627642 + lincRNA lincRNA MGP_C3HHeJ_T0015009.1 MGP_C3HHeJ_G0013113.1 mouse_genomes_project 5 147680790 147681327 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001686.1 MGP_C3HHeJ_G0001610.1 mouse_genomes_project 5 98017954 98021188 + TEC TEC MGP_C3HHeJ_T0001770.1 MGP_C3HHeJ_G0001694.1 mouse_genomes_project 5 124710324 124713191 - TEC TEC MGP_C3HHeJ_T0071953.1 MGP_C3HHeJ_G0029356.1 mouse_genomes_project 5 77345189 77366983 + MGP_C3HHeJ_P0071953 Rest protein_coding protein_coding MGP_C3HHeJ_T0071954.1 MGP_C3HHeJ_G0029356.1 mouse_genomes_project 5 77345894 77366983 + MGP_C3HHeJ_P0071954 Rest protein_coding protein_coding MGP_C3HHeJ_T0073911.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126248359 126326466 + MGP_C3HHeJ_P0073911 Wdr66 protein_coding protein_coding MGP_C3HHeJ_T0073912.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126266799 126293633 + Wdr66 protein_coding retained_intron MGP_C3HHeJ_T0073913.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126266799 126289633 + MGP_C3HHeJ_P0073913 Wdr66 protein_coding protein_coding MGP_C3HHeJ_T0073914.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126268675 126293584 + Wdr66 protein_coding retained_intron MGP_C3HHeJ_T0073915.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126273319 126274773 + Wdr66 protein_coding retained_intron MGP_C3HHeJ_T0073916.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126285851 126326466 + MGP_C3HHeJ_P0073916 Wdr66 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073917.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126289719 126326302 + MGP_C3HHeJ_P0073917 Wdr66 protein_coding protein_coding MGP_C3HHeJ_T0073918.1 MGP_C3HHeJ_G0029761.1 mouse_genomes_project 5 126300243 126326321 + Wdr66 protein_coding retained_intron MGP_C3HHeJ_T0073944.1 MGP_C3HHeJ_G0029768.1 mouse_genomes_project 5 126540915 126571401 - MGP_C3HHeJ_P0073944 Vps33a protein_coding protein_coding MGP_C3HHeJ_T0073945.1 MGP_C3HHeJ_G0029768.1 mouse_genomes_project 5 126552878 126557954 - Vps33a protein_coding retained_intron MGP_C3HHeJ_T0073946.1 MGP_C3HHeJ_G0029768.1 mouse_genomes_project 5 126562297 126567955 - Vps33a protein_coding retained_intron MGP_C3HHeJ_T0073947.1 MGP_C3HHeJ_G0029768.1 mouse_genomes_project 5 126563999 126571342 - MGP_C3HHeJ_P0073947 Vps33a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098504.1 MGP_C3HHeJ_G0036709.1 mouse_genomes_project 5 131927514 131928536 - Gm42871 sense_intronic sense_intronic MGP_C3HHeJ_T0072943.1 MGP_C3HHeJ_G0029585.1 mouse_genomes_project 5 112517313 112594335 + MGP_C3HHeJ_P0072943 Galnt9 protein_coding protein_coding MGP_C3HHeJ_T0072944.1 MGP_C3HHeJ_G0029585.1 mouse_genomes_project 5 112576457 112594337 + MGP_C3HHeJ_P0072944 Galnt9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072945.1 MGP_C3HHeJ_G0029585.1 mouse_genomes_project 5 112576458 112594340 + MGP_C3HHeJ_P0072945 Galnt9 protein_coding protein_coding MGP_C3HHeJ_T0071348.1 MGP_C3HHeJ_G0029251.1 mouse_genomes_project 5 52087405 52110725 + MGP_C3HHeJ_P0071348 Slc34a2 protein_coding protein_coding MGP_C3HHeJ_T0071349.1 MGP_C3HHeJ_G0029251.1 mouse_genomes_project 5 52098668 52121216 + MGP_C3HHeJ_P0071349 Slc34a2 protein_coding protein_coding MGP_C3HHeJ_T0071350.1 MGP_C3HHeJ_G0029251.1 mouse_genomes_project 5 52098669 52115598 + Slc34a2 protein_coding retained_intron MGP_C3HHeJ_T0098509.1 MGP_C3HHeJ_G0036713.1 mouse_genomes_project 5 140437072 140444346 - Gm20485 sense_intronic sense_intronic MGP_C3HHeJ_T0070174.1 MGP_C3HHeJ_G0029055.1 mouse_genomes_project 5 23161236 23206549 + MGP_C3HHeJ_P0070174 Galntl5 protein_coding protein_coding MGP_C3HHeJ_T0070175.1 MGP_C3HHeJ_G0029055.1 mouse_genomes_project 5 23161278 23206547 + MGP_C3HHeJ_P0070175 Galntl5 protein_coding protein_coding MGP_C3HHeJ_T0073040.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114438443 114446360 - MGP_C3HHeJ_P0073040 Asphd2 protein_coding protein_coding MGP_C3HHeJ_T0073041.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114439537 114443860 - Asphd2 protein_coding processed_transcript MGP_C3HHeJ_T0073042.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114445645 114448171 - MGP_C3HHeJ_P0073042 Asphd2 protein_coding protein_coding MGP_C3HHeJ_T0073043.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114445834 114449008 - MGP_C3HHeJ_P0073043 Asphd2 protein_coding protein_coding MGP_C3HHeJ_T0073044.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114445922 114448105 - MGP_C3HHeJ_P0073044 Asphd2 protein_coding protein_coding MGP_C3HHeJ_T0073045.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114445957 114448443 - MGP_C3HHeJ_P0073045 Asphd2 protein_coding protein_coding MGP_C3HHeJ_T0073046.1 MGP_C3HHeJ_G0029604.1 mouse_genomes_project 5 114446027 114448077 - MGP_C3HHeJ_P0073046 Asphd2 protein_coding protein_coding MGP_C3HHeJ_T0070447.1 MGP_C3HHeJ_G0029109.1 mouse_genomes_project 5 29328713 29329480 - MGP_C3HHeJ_P0070447 Ucn protein_coding protein_coding MGP_C3HHeJ_T0070448.1 MGP_C3HHeJ_G0029109.1 mouse_genomes_project 5 29328713 29329480 - MGP_C3HHeJ_P0070448 Ucn protein_coding protein_coding MGP_C3HHeJ_T0004792.1 MGP_C3HHeJ_G0004118.1 mouse_genomes_project 5 141257838 141260219 + Gm36266 antisense antisense MGP_C3HHeJ_T0001740.1 MGP_C3HHeJ_G0001664.1 mouse_genomes_project 5 117740338 117742242 - TEC TEC MGP_C3HHeJ_T0014757.1 MGP_C3HHeJ_G0012861.1 mouse_genomes_project 5 31399473 31399688 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014819.1 MGP_C3HHeJ_G0012923.1 mouse_genomes_project 5 60696522 60697360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004629.1 MGP_C3HHeJ_G0004001.1 mouse_genomes_project 5 65768764 65797187 - 1700126H18Rik antisense antisense MGP_C3HHeJ_T0074606.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139139810 139214993 + MGP_C3HHeJ_P0074606 Por protein_coding protein_coding MGP_C3HHeJ_T0074607.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139144358 139161163 + Por protein_coding processed_transcript MGP_C3HHeJ_T0074608.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139144362 139214449 + MGP_C3HHeJ_P0074608 Por protein_coding protein_coding MGP_C3HHeJ_T0074609.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139165177 139218658 + MGP_C3HHeJ_P0074609 Por protein_coding protein_coding MGP_C3HHeJ_T0074610.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139165299 139218658 + MGP_C3HHeJ_P0074610 Por protein_coding protein_coding MGP_C3HHeJ_T0074611.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139198201 139215210 + Por protein_coding retained_intron MGP_C3HHeJ_T0074612.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139209057 139213573 + MGP_C3HHeJ_P0074612 Por protein_coding protein_coding MGP_C3HHeJ_T0074613.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139214881 139217247 + Por protein_coding retained_intron MGP_C3HHeJ_T0074614.1 MGP_C3HHeJ_G0029881.1 mouse_genomes_project 5 139216512 139217379 + Por protein_coding retained_intron MGP_C3HHeJ_T0008113.1 MGP_C3HHeJ_G0006606.1 mouse_genomes_project 5 89449619 89468786 + Gm42912 lincRNA lincRNA MGP_C3HHeJ_T0102030.1 MGP_C3HHeJ_G0039995.1 mouse_genomes_project 5 14754946 14759168 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0072857.1 MGP_C3HHeJ_G0029564.1 mouse_genomes_project 5 110588745 110883330 - MGP_C3HHeJ_P0072857 protein_coding protein_coding MGP_C3HHeJ_T0074496.1 MGP_C3HHeJ_G0029857.1 mouse_genomes_project 5 138096662 138142867 - MGP_C3HHeJ_P0074496 Eln protein_coding protein_coding MGP_C3HHeJ_T0074497.1 MGP_C3HHeJ_G0029857.1 mouse_genomes_project 5 138096907 138120295 - Eln protein_coding retained_intron MGP_C3HHeJ_T0074498.1 MGP_C3HHeJ_G0029857.1 mouse_genomes_project 5 138096907 138142790 - MGP_C3HHeJ_P0074498 Eln protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074499.1 MGP_C3HHeJ_G0029857.1 mouse_genomes_project 5 138120597 138124093 - Eln protein_coding retained_intron MGP_C3HHeJ_T0074500.1 MGP_C3HHeJ_G0029857.1 mouse_genomes_project 5 138140269 138142797 - Eln protein_coding retained_intron MGP_C3HHeJ_T0101221.1 MGP_C3HHeJ_G0039354.1 mouse_genomes_project 5 55629242 55712489 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0001499.1 MGP_C3HHeJ_G0001426.1 mouse_genomes_project 5 42974040 42974383 + TEC TEC MGP_C3HHeJ_T0008257.1 MGP_C3HHeJ_G0006706.1 mouse_genomes_project 5 122248336 122255157 - Tbx3os2 lincRNA lincRNA MGP_C3HHeJ_T0017957.1 MGP_C3HHeJ_G0015371.1 mouse_genomes_project 5 125947314 125972394 - Gm44574 processed_transcript processed_transcript MGP_C3HHeJ_T0075014.1 MGP_C3HHeJ_G0029960.1 mouse_genomes_project 5 142089657 142097570 - MGP_C3HHeJ_P0075014 Gal3st4 protein_coding protein_coding MGP_C3HHeJ_T0075015.1 MGP_C3HHeJ_G0029960.1 mouse_genomes_project 5 142089661 142097484 - MGP_C3HHeJ_P0075015 Gal3st4 protein_coding protein_coding MGP_C3HHeJ_T0075016.1 MGP_C3HHeJ_G0029960.1 mouse_genomes_project 5 142089674 142097531 - Gal3st4 protein_coding processed_transcript MGP_C3HHeJ_T0075017.1 MGP_C3HHeJ_G0029960.1 mouse_genomes_project 5 142089674 142097531 - MGP_C3HHeJ_P0075017 Gal3st4 protein_coding protein_coding MGP_C3HHeJ_T0075019.1 MGP_C3HHeJ_G0029960.1 mouse_genomes_project 5 142095722 142097479 - MGP_C3HHeJ_P0075019 Gal3st4 protein_coding protein_coding MGP_C3HHeJ_T0072528.1 MGP_C3HHeJ_G0029495.1 mouse_genomes_project 5 103090732 103152252 + MGP_C3HHeJ_P0072528 Cds1 protein_coding protein_coding MGP_C3HHeJ_T0072529.1 MGP_C3HHeJ_G0029495.1 mouse_genomes_project 5 103135021 103149841 + Cds1 protein_coding retained_intron MGP_C3HHeJ_T0070572.1 MGP_C3HHeJ_G0029126.1 mouse_genomes_project 5 29758358 29770409 - MGP_C3HHeJ_P0070572 Supt7l protein_coding protein_coding MGP_C3HHeJ_T0070573.1 MGP_C3HHeJ_G0029126.1 mouse_genomes_project 5 29760284 29770502 - MGP_C3HHeJ_P0070573 Supt7l protein_coding protein_coding MGP_C3HHeJ_T0070574.1 MGP_C3HHeJ_G0029126.1 mouse_genomes_project 5 29765321 29771578 - Supt7l protein_coding retained_intron MGP_C3HHeJ_T0070575.1 MGP_C3HHeJ_G0029126.1 mouse_genomes_project 5 29769227 29770473 - Supt7l protein_coding retained_intron MGP_C3HHeJ_T0075599.1 MGP_C3HHeJ_G0030089.1 mouse_genomes_project 5 152545234 152562318 - MGP_C3HHeJ_P0075599 Slc46a3 protein_coding protein_coding MGP_C3HHeJ_T0075600.1 MGP_C3HHeJ_G0030089.1 mouse_genomes_project 5 152545238 152562318 - MGP_C3HHeJ_P0075600 Slc46a3 protein_coding protein_coding MGP_C3HHeJ_T0075601.1 MGP_C3HHeJ_G0030089.1 mouse_genomes_project 5 152545356 152546667 - Slc46a3 protein_coding retained_intron MGP_C3HHeJ_T0075602.1 MGP_C3HHeJ_G0030089.1 mouse_genomes_project 5 152561385 152562318 - MGP_C3HHeJ_P0075602 Slc46a3 protein_coding protein_coding MGP_C3HHeJ_T0008362.1 MGP_C3HHeJ_G0006777.1 mouse_genomes_project 5 153426871 153434802 + Gm36186 lincRNA lincRNA MGP_C3HHeJ_T0001669.1 MGP_C3HHeJ_G0001593.1 mouse_genomes_project 5 76704377 76706809 - TEC TEC MGP_C3HHeJ_T0075186.1 MGP_C3HHeJ_G0029996.1 mouse_genomes_project 5 144428711 144453130 + MGP_C3HHeJ_P0075186 Eif3b protein_coding protein_coding MGP_C3HHeJ_T0075187.1 MGP_C3HHeJ_G0029996.1 mouse_genomes_project 5 144436475 144440057 + Eif3b protein_coding retained_intron MGP_C3HHeJ_T0075188.1 MGP_C3HHeJ_G0029996.1 mouse_genomes_project 5 144449735 144452467 + MGP_C3HHeJ_P0075188 Eif3b protein_coding protein_coding MGP_C3HHeJ_T0010645.1 MGP_C3HHeJ_G0008778.1 mouse_genomes_project 5 141859984 141860072 - Mir93 miRNA miRNA MGP_C3HHeJ_T0070975.1 MGP_C3HHeJ_G0029186.1 mouse_genomes_project 5 34682025 34684572 + MGP_C3HHeJ_P0070975 Psapl1 protein_coding protein_coding MGP_C3HHeJ_T0010597.1 MGP_C3HHeJ_G0008730.1 mouse_genomes_project 5 63595545 63595641 - Gm22395 miRNA miRNA MGP_C3HHeJ_T0070866.1 MGP_C3HHeJ_G0029168.1 mouse_genomes_project 5 33060395 33082412 - MGP_C3HHeJ_P0070866 Nop14 protein_coding protein_coding MGP_C3HHeJ_T0070867.1 MGP_C3HHeJ_G0029168.1 mouse_genomes_project 5 33063188 33069459 - MGP_C3HHeJ_P0070867 Nop14 protein_coding protein_coding MGP_C3HHeJ_T0070868.1 MGP_C3HHeJ_G0029168.1 mouse_genomes_project 5 33065365 33070714 - Nop14 protein_coding retained_intron MGP_C3HHeJ_T0101225.1 MGP_C3HHeJ_G0039358.1 mouse_genomes_project 5 73318348 73319212 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101226.1 MGP_C3HHeJ_G0039358.1 mouse_genomes_project 5 73318393 73329304 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101227.1 MGP_C3HHeJ_G0039358.1 mouse_genomes_project 5 73329127 73329581 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099478.1 MGP_C3HHeJ_G0037672.1 mouse_genomes_project 5 117820706 117820847 + Gm24407 snRNA snRNA MGP_C3HHeJ_T0073212.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116847656 116886109 - MGP_C3HHeJ_P0073212 Trpv4 protein_coding protein_coding MGP_C3HHeJ_T0073213.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116847658 116886106 - MGP_C3HHeJ_P0073213 Trpv4 protein_coding protein_coding MGP_C3HHeJ_T0073214.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116847661 116862400 - Trpv4 protein_coding retained_intron MGP_C3HHeJ_T0073215.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116848157 116872743 - MGP_C3HHeJ_P0073215 Trpv4 protein_coding protein_coding MGP_C3HHeJ_T0073216.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116848157 116872743 - MGP_C3HHeJ_P0073216 Trpv4 protein_coding protein_coding MGP_C3HHeJ_T0073217.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116848157 116872743 - MGP_C3HHeJ_P0073217 Trpv4 protein_coding protein_coding MGP_C3HHeJ_T0073218.1 MGP_C3HHeJ_G0029637.1 mouse_genomes_project 5 116852912 116856806 - Trpv4 protein_coding retained_intron MGP_C3HHeJ_T0074643.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139478564 139494534 - MGP_C3HHeJ_P0074643 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0074644.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139478576 139494500 - MGP_C3HHeJ_P0074644 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0074645.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139478577 139480682 - MGP_C3HHeJ_P0074645 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0074646.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139479180 139480630 - MGP_C3HHeJ_P0074646 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0074647.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139482224 139484940 - MGP_C3HHeJ_P0074647 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0074648.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139482434 139487045 - MGP_C3HHeJ_P0074648 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0074649.1 MGP_C3HHeJ_G0029888.1 mouse_genomes_project 5 139485204 139494443 - MGP_C3HHeJ_P0074649 Ssc4d protein_coding protein_coding MGP_C3HHeJ_T0014790.1 MGP_C3HHeJ_G0012894.1 mouse_genomes_project 5 48831875 48834172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008327.1 MGP_C3HHeJ_G0006748.1 mouse_genomes_project 5 140496946 140516468 + 4933404O12Rik lincRNA lincRNA MGP_C3HHeJ_T0008328.1 MGP_C3HHeJ_G0006748.1 mouse_genomes_project 5 140496981 140513116 + 4933404O12Rik lincRNA lincRNA MGP_C3HHeJ_T0008329.1 MGP_C3HHeJ_G0006748.1 mouse_genomes_project 5 140497152 140513035 + 4933404O12Rik lincRNA lincRNA MGP_C3HHeJ_T0008330.1 MGP_C3HHeJ_G0006748.1 mouse_genomes_project 5 140497201 140516474 + 4933404O12Rik lincRNA lincRNA MGP_C3HHeJ_T0008016.1 MGP_C3HHeJ_G0006530.1 mouse_genomes_project 5 35658364 35669733 + lincRNA lincRNA MGP_C3HHeJ_T0008017.1 MGP_C3HHeJ_G0006530.1 mouse_genomes_project 5 35661328 35668430 + lincRNA lincRNA MGP_C3HHeJ_T0072868.1 MGP_C3HHeJ_G0029573.1 mouse_genomes_project 5 112045163 112050073 + MGP_C3HHeJ_P0072868 Plcxd1 protein_coding protein_coding MGP_C3HHeJ_T0072869.1 MGP_C3HHeJ_G0029573.1 mouse_genomes_project 5 112045616 112047073 + MGP_C3HHeJ_P0072869 Plcxd1 protein_coding protein_coding MGP_C3HHeJ_T0072870.1 MGP_C3HHeJ_G0029573.1 mouse_genomes_project 5 112045753 112052206 + MGP_C3HHeJ_P0072870 Plcxd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072871.1 MGP_C3HHeJ_G0029573.1 mouse_genomes_project 5 112046397 112052211 + Plcxd1 protein_coding processed_transcript MGP_C3HHeJ_T0075174.1 MGP_C3HHeJ_G0029994.1 mouse_genomes_project 5 144327687 144331914 - MGP_C3HHeJ_P0075174 Mrm2 protein_coding protein_coding MGP_C3HHeJ_T0071037.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35717100 35745914 + MGP_C3HHeJ_P0071037 Crmp1 protein_coding protein_coding MGP_C3HHeJ_T0071038.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35717245 35771646 + MGP_C3HHeJ_P0071038 Crmp1 protein_coding protein_coding MGP_C3HHeJ_T0071039.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35717899 35756675 + MGP_C3HHeJ_P0071039 Crmp1 protein_coding protein_coding MGP_C3HHeJ_T0071040.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35720935 35771614 + MGP_C3HHeJ_P0071040 Crmp1 protein_coding protein_coding MGP_C3HHeJ_T0071041.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35721016 35742657 + Crmp1 protein_coding retained_intron MGP_C3HHeJ_T0071042.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35723243 35757414 + MGP_C3HHeJ_P0071042 Crmp1 protein_coding protein_coding MGP_C3HHeJ_T0071043.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35745869 35755265 + Crmp1 protein_coding retained_intron MGP_C3HHeJ_T0071044.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35758289 35761712 + Crmp1 protein_coding retained_intron MGP_C3HHeJ_T0071045.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35758949 35761220 + Crmp1 protein_coding retained_intron MGP_C3HHeJ_T0071046.1 MGP_C3HHeJ_G0029199.1 mouse_genomes_project 5 35762413 35766175 + Crmp1 protein_coding retained_intron MGP_C3HHeJ_T0099490.1 MGP_C3HHeJ_G0037684.1 mouse_genomes_project 5 139632655 139632825 - Gm22214 snRNA snRNA MGP_C3HHeJ_T0008343.1 MGP_C3HHeJ_G0006761.1 mouse_genomes_project 5 147357533 147358458 - Rbakdn lincRNA lincRNA MGP_C3HHeJ_T0008344.1 MGP_C3HHeJ_G0006761.1 mouse_genomes_project 5 147357533 147358506 - Rbakdn lincRNA lincRNA MGP_C3HHeJ_T0073948.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126576151 126687819 - MGP_C3HHeJ_P0073948 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073949.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126576151 126687523 - MGP_C3HHeJ_P0073949 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073950.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126576163 126687476 - MGP_C3HHeJ_P0073950 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073951.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126576163 126648751 - MGP_C3HHeJ_P0073951 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073952.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126576174 126600970 - Clip1 protein_coding retained_intron MGP_C3HHeJ_T0073953.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126576223 126576910 - Clip1 protein_coding processed_transcript MGP_C3HHeJ_T0073954.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126577185 126687526 - MGP_C3HHeJ_P0073954 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073955.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126577426 126609337 - Clip1 protein_coding retained_intron MGP_C3HHeJ_T0073956.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126577596 126656931 - MGP_C3HHeJ_P0073956 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073957.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126577803 126614992 - MGP_C3HHeJ_P0073957 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073958.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126584496 126614633 - Clip1 protein_coding retained_intron MGP_C3HHeJ_T0073959.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126588372 126600879 - Clip1 protein_coding retained_intron MGP_C3HHeJ_T0073960.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126614826 126656821 - MGP_C3HHeJ_P0073960 Clip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073961.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126614875 126668688 - MGP_C3HHeJ_P0073961 Clip1 protein_coding protein_coding MGP_C3HHeJ_T0073962.1 MGP_C3HHeJ_G0029769.1 mouse_genomes_project 5 126631735 126634425 - Clip1 protein_coding retained_intron MGP_C3HHeJ_T0001533.1 MGP_C3HHeJ_G0001459.1 mouse_genomes_project 5 47904588 47905416 - TEC TEC MGP_C3HHeJ_T0008263.1 MGP_C3HHeJ_G0006710.1 mouse_genomes_project 5 122537216 122541362 + Gm43277 lincRNA lincRNA MGP_C3HHeJ_T0072268.1 MGP_C3HHeJ_G0029443.1 mouse_genomes_project 5 93009572 93015085 - MGP_C3HHeJ_P0072268 U90926 protein_coding protein_coding MGP_C3HHeJ_T0072269.1 MGP_C3HHeJ_G0029443.1 mouse_genomes_project 5 93009575 93015085 - MGP_C3HHeJ_P0072269 U90926 protein_coding protein_coding MGP_C3HHeJ_T0072270.1 MGP_C3HHeJ_G0029443.1 mouse_genomes_project 5 93009793 93012030 - U90926 protein_coding retained_intron MGP_C3HHeJ_T0001612.1 MGP_C3HHeJ_G0001537.1 mouse_genomes_project 5 65558742 65560310 + TEC TEC MGP_C3HHeJ_T0070231.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27294985 27302129 + MGP_C3HHeJ_P0070231 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070232.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27294986 27324056 + MGP_C3HHeJ_P0070232 Rnf32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070233.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27294988 27297741 + MGP_C3HHeJ_P0070233 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070234.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27294990 27324097 + MGP_C3HHeJ_P0070234 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070235.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27294996 27302189 + MGP_C3HHeJ_P0070235 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070236.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27294999 27324099 + MGP_C3HHeJ_P0070236 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070237.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27295051 27306645 + Rnf32 protein_coding retained_intron MGP_C3HHeJ_T0070238.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27295077 27296985 + Rnf32 protein_coding processed_transcript MGP_C3HHeJ_T0070239.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27295580 27302078 + MGP_C3HHeJ_P0070239 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070240.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27296999 27323866 + MGP_C3HHeJ_P0070240 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070241.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27297664 27323876 + MGP_C3HHeJ_P0070241 Rnf32 protein_coding protein_coding MGP_C3HHeJ_T0070242.1 MGP_C3HHeJ_G0029071.1 mouse_genomes_project 5 27322360 27327032 + Rnf32 protein_coding retained_intron MGP_C3HHeJ_T0001557.1 MGP_C3HHeJ_G0001483.1 mouse_genomes_project 5 50916114 50919923 - TEC TEC MGP_C3HHeJ_T0071794.1 MGP_C3HHeJ_G0029329.1 mouse_genomes_project 5 73601614 73635962 + MGP_C3HHeJ_P0071794 Spata18 protein_coding protein_coding MGP_C3HHeJ_T0071795.1 MGP_C3HHeJ_G0029329.1 mouse_genomes_project 5 73601617 73631877 + MGP_C3HHeJ_P0071795 Spata18 protein_coding non_stop_decay MGP_C3HHeJ_T0071796.1 MGP_C3HHeJ_G0029329.1 mouse_genomes_project 5 73607829 73635932 + MGP_C3HHeJ_P0071796 Spata18 protein_coding protein_coding MGP_C3HHeJ_T0071797.1 MGP_C3HHeJ_G0029329.1 mouse_genomes_project 5 73609577 73635934 + MGP_C3HHeJ_P0071797 Spata18 protein_coding protein_coding MGP_C3HHeJ_T0072311.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93228086 93251941 - MGP_C3HHeJ_P0072311 protein_coding protein_coding MGP_C3HHeJ_T0072312.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93239470 93241608 - protein_coding retained_intron MGP_C3HHeJ_T0072313.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93242426 93251269 - protein_coding processed_transcript MGP_C3HHeJ_T0072314.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93244732 93251813 - protein_coding retained_intron MGP_C3HHeJ_T0072315.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93245003 93251836 - MGP_C3HHeJ_P0072315 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072316.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93247624 93251845 - MGP_C3HHeJ_P0072316 protein_coding protein_coding MGP_C3HHeJ_T0072317.1 MGP_C3HHeJ_G0029450.1 mouse_genomes_project 5 93247632 93251479 - MGP_C3HHeJ_P0072317 protein_coding protein_coding MGP_C3HHeJ_T0014887.1 MGP_C3HHeJ_G0012991.1 mouse_genomes_project 5 92550516 92551388 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001631.1 MGP_C3HHeJ_G0001556.1 mouse_genomes_project 5 67415564 67417319 - TEC TEC MGP_C3HHeJ_T0004591.1 MGP_C3HHeJ_G0003971.1 mouse_genomes_project 5 32627737 32632558 + Gm42848 antisense antisense MGP_C3HHeJ_T0072035.1 MGP_C3HHeJ_G0029371.1 mouse_genomes_project 5 87049367 87153880 - MGP_C3HHeJ_P0072035 Tmprss11f protein_coding protein_coding MGP_C3HHeJ_T0072036.1 MGP_C3HHeJ_G0029371.1 mouse_genomes_project 5 87091465 87153880 - Tmprss11f protein_coding processed_transcript MGP_C3HHeJ_T0072037.1 MGP_C3HHeJ_G0029371.1 mouse_genomes_project 5 87126562 87153839 - Tmprss11f protein_coding retained_intron MGP_C3HHeJ_T0074752.1 MGP_C3HHeJ_G0029905.1 mouse_genomes_project 5 140549998 140560107 + MGP_C3HHeJ_P0074752 Cldn15 protein_coding protein_coding MGP_C3HHeJ_T0074753.1 MGP_C3HHeJ_G0029905.1 mouse_genomes_project 5 140552238 140560093 + MGP_C3HHeJ_P0074753 Cldn15 protein_coding protein_coding MGP_C3HHeJ_T0074754.1 MGP_C3HHeJ_G0029905.1 mouse_genomes_project 5 140558204 140559262 + Cldn15 protein_coding processed_transcript MGP_C3HHeJ_T0073480.1 MGP_C3HHeJ_G0029686.1 mouse_genomes_project 5 120445940 120480066 + MGP_C3HHeJ_P0073480 Fbxo21 protein_coding protein_coding MGP_C3HHeJ_T0073481.1 MGP_C3HHeJ_G0029686.1 mouse_genomes_project 5 120445984 120456782 + Fbxo21 protein_coding retained_intron MGP_C3HHeJ_T0073482.1 MGP_C3HHeJ_G0029686.1 mouse_genomes_project 5 120445994 120480065 + MGP_C3HHeJ_P0073482 Fbxo21 protein_coding protein_coding MGP_C3HHeJ_T0073483.1 MGP_C3HHeJ_G0029686.1 mouse_genomes_project 5 120446000 120480067 + MGP_C3HHeJ_P0073483 Fbxo21 protein_coding protein_coding MGP_C3HHeJ_T0073484.1 MGP_C3HHeJ_G0029686.1 mouse_genomes_project 5 120446524 120455435 + Fbxo21 protein_coding processed_transcript MGP_C3HHeJ_T0073485.1 MGP_C3HHeJ_G0029686.1 mouse_genomes_project 5 120448530 120455321 + Fbxo21 protein_coding processed_transcript MGP_C3HHeJ_T0001728.1 MGP_C3HHeJ_G0001652.1 mouse_genomes_project 5 114704954 114706255 + TEC TEC MGP_C3HHeJ_T0102055.1 MGP_C3HHeJ_G0040020.1 mouse_genomes_project 5 140587211 140590789 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0071485.1 MGP_C3HHeJ_G0029279.1 mouse_genomes_project 5 64978046 65048132 - MGP_C3HHeJ_P0071485 Gm43552 protein_coding protein_coding MGP_C3HHeJ_T0004695.1 MGP_C3HHeJ_G0004047.1 mouse_genomes_project 5 110571212 110580436 + antisense antisense MGP_C3HHeJ_T0071385.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56979985 57416930 + MGP_C3HHeJ_P0071385 Pcdh7 protein_coding protein_coding MGP_C3HHeJ_T0071386.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56980038 56991493 + MGP_C3HHeJ_P0071386 Pcdh7 protein_coding protein_coding MGP_C3HHeJ_T0071387.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56981116 57413043 + MGP_C3HHeJ_P0071387 Pcdh7 protein_coding protein_coding MGP_C3HHeJ_T0071388.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56982142 57186690 + MGP_C3HHeJ_P0071388 Pcdh7 protein_coding protein_coding MGP_C3HHeJ_T0071389.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56983181 57413489 + MGP_C3HHeJ_P0071389 Pcdh7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071390.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56983932 57179565 + MGP_C3HHeJ_P0071390 Pcdh7 protein_coding protein_coding MGP_C3HHeJ_T0071391.1 MGP_C3HHeJ_G0029258.1 mouse_genomes_project 5 56984228 57413146 + MGP_C3HHeJ_P0071391 Pcdh7 protein_coding protein_coding MGP_C3HHeJ_T0004639.1 MGP_C3HHeJ_G0004009.1 mouse_genomes_project 5 67591352 67601963 - 4930425K10Rik antisense antisense MGP_C3HHeJ_T0014867.1 MGP_C3HHeJ_G0012971.1 mouse_genomes_project 5 87646939 87647015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014675.1 MGP_C3HHeJ_G0012779.1 mouse_genomes_project 5 5180701 5181116 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100696.1 MGP_C3HHeJ_G0038890.1 mouse_genomes_project 5 55982936 55983066 + Gm23896 snoRNA snoRNA MGP_C3HHeJ_T0102038.1 MGP_C3HHeJ_G0040003.1 mouse_genomes_project 5 87627752 87630689 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0073778.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125307032 125320889 + Arpc3 protein_coding retained_intron MGP_C3HHeJ_T0073779.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125307076 125315758 + Arpc3 protein_coding retained_intron MGP_C3HHeJ_T0073780.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125307102 125324494 + MGP_C3HHeJ_P0073780 Arpc3 protein_coding protein_coding MGP_C3HHeJ_T0073781.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125315431 125333904 + MGP_C3HHeJ_P0073781 Arpc3 protein_coding protein_coding MGP_C3HHeJ_T0073782.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125318833 125324709 + MGP_C3HHeJ_P0073782 Arpc3 protein_coding protein_coding MGP_C3HHeJ_T0073783.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125318960 125324700 + MGP_C3HHeJ_P0073783 Arpc3 protein_coding protein_coding MGP_C3HHeJ_T0073784.1 MGP_C3HHeJ_G0029744.1 mouse_genomes_project 5 125321976 125323344 + Arpc3 protein_coding retained_intron MGP_C3HHeJ_T0075173.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144321099 144337658 + MGP_C3HHeJ_P0075173 Nudt1 protein_coding protein_coding MGP_C3HHeJ_T0075175.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144331875 144338163 + MGP_C3HHeJ_P0075175 Nudt1 protein_coding protein_coding MGP_C3HHeJ_T0075176.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144331924 144338163 + MGP_C3HHeJ_P0075176 Nudt1 protein_coding protein_coding MGP_C3HHeJ_T0075177.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144331969 144337967 + MGP_C3HHeJ_P0075177 Nudt1 protein_coding protein_coding MGP_C3HHeJ_T0075178.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144332410 144337834 + MGP_C3HHeJ_P0075178 Nudt1 protein_coding protein_coding MGP_C3HHeJ_T0075179.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144332439 144335722 + MGP_C3HHeJ_P0075179 Nudt1 protein_coding protein_coding MGP_C3HHeJ_T0075180.1 MGP_C3HHeJ_G0029993.1 mouse_genomes_project 5 144334599 144335838 + Nudt1 protein_coding processed_transcript MGP_C3HHeJ_T0014714.1 MGP_C3HHeJ_G0012818.1 mouse_genomes_project 5 20472989 20474148 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070630.1 MGP_C3HHeJ_G0029133.1 mouse_genomes_project 5 30726046 30763779 + MGP_C3HHeJ_P0070630 Ppp1cb protein_coding protein_coding MGP_C3HHeJ_T0070631.1 MGP_C3HHeJ_G0029133.1 mouse_genomes_project 5 30726355 30786218 + MGP_C3HHeJ_P0070631 Ppp1cb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070632.1 MGP_C3HHeJ_G0029133.1 mouse_genomes_project 5 30726389 30731898 + Ppp1cb protein_coding retained_intron MGP_C3HHeJ_T0070633.1 MGP_C3HHeJ_G0029133.1 mouse_genomes_project 5 30726425 30759295 + MGP_C3HHeJ_P0070633 Ppp1cb protein_coding protein_coding MGP_C3HHeJ_T0070634.1 MGP_C3HHeJ_G0029133.1 mouse_genomes_project 5 30745564 30753571 + Ppp1cb protein_coding processed_transcript MGP_C3HHeJ_T0070635.1 MGP_C3HHeJ_G0029133.1 mouse_genomes_project 5 30754228 30761016 + MGP_C3HHeJ_P0070635 Ppp1cb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001788.1 MGP_C3HHeJ_G0001712.1 mouse_genomes_project 5 127335775 127337109 - TEC TEC MGP_C3HHeJ_T0073934.1 MGP_C3HHeJ_G0029767.1 mouse_genomes_project 5 126522771 126524194 + MGP_C3HHeJ_P0073934 B3gnt4 protein_coding protein_coding MGP_C3HHeJ_T0004753.1 MGP_C3HHeJ_G0004090.1 mouse_genomes_project 5 126332397 126345912 - Gm15860 antisense antisense MGP_C3HHeJ_T0004754.1 MGP_C3HHeJ_G0004090.1 mouse_genomes_project 5 126334007 126346014 - Gm15860 antisense antisense MGP_C3HHeJ_T0004755.1 MGP_C3HHeJ_G0004090.1 mouse_genomes_project 5 126334143 126343476 - Gm15860 antisense antisense MGP_C3HHeJ_T0101230.1 MGP_C3HHeJ_G0039361.1 mouse_genomes_project 5 77607845 77608232 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101231.1 MGP_C3HHeJ_G0039361.1 mouse_genomes_project 5 77607861 77608416 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0004588.1 MGP_C3HHeJ_G0003968.1 mouse_genomes_project 5 30774968 30846125 - antisense antisense MGP_C3HHeJ_T0072394.1 MGP_C3HHeJ_G0029466.1 mouse_genomes_project 5 98141751 98239694 + MGP_C3HHeJ_P0072394 Bmp2k protein_coding protein_coding MGP_C3HHeJ_T0072395.1 MGP_C3HHeJ_G0029466.1 mouse_genomes_project 5 98141751 98217103 + MGP_C3HHeJ_P0072395 Bmp2k protein_coding protein_coding MGP_C3HHeJ_T0070346.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28872946 28959247 + MGP_C3HHeJ_P0070346 Dpysl5 protein_coding protein_coding MGP_C3HHeJ_T0070347.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28872964 28962294 + MGP_C3HHeJ_P0070347 Dpysl5 protein_coding protein_coding MGP_C3HHeJ_T0070348.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28872971 28911444 + MGP_C3HHeJ_P0070348 Dpysl5 protein_coding protein_coding MGP_C3HHeJ_T0070349.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28940310 28949115 + Dpysl5 protein_coding processed_transcript MGP_C3HHeJ_T0070350.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28950370 28959233 + Dpysl5 protein_coding retained_intron MGP_C3HHeJ_T0070351.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28954923 28959339 + Dpysl5 protein_coding retained_intron MGP_C3HHeJ_T0070352.1 MGP_C3HHeJ_G0029093.1 mouse_genomes_project 5 28956644 28959486 + Dpysl5 protein_coding retained_intron MGP_C3HHeJ_T0071120.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37033127 37068156 - MGP_C3HHeJ_P0071120 Wdr1 protein_coding protein_coding MGP_C3HHeJ_T0071121.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37033892 37036439 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071122.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37033899 37067985 - MGP_C3HHeJ_P0071122 Wdr1 protein_coding protein_coding MGP_C3HHeJ_T0071123.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37034033 37036327 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071124.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37035507 37036163 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071125.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37036280 37038310 - Wdr1 protein_coding processed_transcript MGP_C3HHeJ_T0071126.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37046510 37067900 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071127.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37052027 37069638 - Wdr1 protein_coding processed_transcript MGP_C3HHeJ_T0071128.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37057577 37068156 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071129.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37063982 37067893 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071130.1 MGP_C3HHeJ_G0029213.1 mouse_genomes_project 5 37067258 37067925 - Wdr1 protein_coding retained_intron MGP_C3HHeJ_T0071010.1 MGP_C3HHeJ_G0029192.1 mouse_genomes_project 5 35209715 35210988 - MGP_C3HHeJ_P0071010 Bloc1s4 protein_coding protein_coding MGP_C3HHeJ_T0072360.1 MGP_C3HHeJ_G0029460.1 mouse_genomes_project 5 94111223 94120190 + MGP_C3HHeJ_P0072360 Ccng2 protein_coding protein_coding MGP_C3HHeJ_T0072361.1 MGP_C3HHeJ_G0029460.1 mouse_genomes_project 5 94111555 94112423 + Ccng2 protein_coding processed_transcript MGP_C3HHeJ_T0072362.1 MGP_C3HHeJ_G0029460.1 mouse_genomes_project 5 94111567 94113684 + Ccng2 protein_coding processed_transcript MGP_C3HHeJ_T0072363.1 MGP_C3HHeJ_G0029460.1 mouse_genomes_project 5 94111605 94120184 + Ccng2 protein_coding retained_intron MGP_C3HHeJ_T0072364.1 MGP_C3HHeJ_G0029460.1 mouse_genomes_project 5 94112280 94120183 + MGP_C3HHeJ_P0072364 Ccng2 protein_coding protein_coding MGP_C3HHeJ_T0072365.1 MGP_C3HHeJ_G0029460.1 mouse_genomes_project 5 94112675 94117450 + Ccng2 protein_coding retained_intron MGP_C3HHeJ_T0073570.1 MGP_C3HHeJ_G0029707.1 mouse_genomes_project 5 123308209 123339971 - MGP_C3HHeJ_P0073570 Dtx1 protein_coding protein_coding MGP_C3HHeJ_T0073571.1 MGP_C3HHeJ_G0029707.1 mouse_genomes_project 5 123308210 123323404 - Dtx1 protein_coding retained_intron MGP_C3HHeJ_T0073572.1 MGP_C3HHeJ_G0029707.1 mouse_genomes_project 5 123308256 123310086 - Dtx1 protein_coding retained_intron MGP_C3HHeJ_T0073573.1 MGP_C3HHeJ_G0029707.1 mouse_genomes_project 5 123309209 123310922 - Dtx1 protein_coding retained_intron MGP_C3HHeJ_T0073574.1 MGP_C3HHeJ_G0029707.1 mouse_genomes_project 5 123309459 123310820 - Dtx1 protein_coding retained_intron MGP_C3HHeJ_T0073575.1 MGP_C3HHeJ_G0029707.1 mouse_genomes_project 5 123322721 123333890 - Dtx1 protein_coding processed_transcript MGP_C3HHeJ_T0099454.1 MGP_C3HHeJ_G0037648.1 mouse_genomes_project 5 83239829 83239926 + Gm24129 snRNA snRNA MGP_C3HHeJ_T0071627.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67271677 67516841 - MGP_C3HHeJ_P0071627 Atp8a1 protein_coding protein_coding MGP_C3HHeJ_T0071628.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67271677 67516777 - MGP_C3HHeJ_P0071628 Atp8a1 protein_coding protein_coding MGP_C3HHeJ_T0071629.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67272698 67516838 - MGP_C3HHeJ_P0071629 Atp8a1 protein_coding protein_coding MGP_C3HHeJ_T0071630.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67274113 67516702 - MGP_C3HHeJ_P0071630 Atp8a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071631.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67276215 67319733 - Atp8a1 protein_coding processed_transcript MGP_C3HHeJ_T0071632.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67341897 67434614 - Atp8a1 protein_coding retained_intron MGP_C3HHeJ_T0071633.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67424503 67426986 - Atp8a1 protein_coding retained_intron MGP_C3HHeJ_T0071634.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67434022 67484690 - Atp8a1 protein_coding processed_transcript MGP_C3HHeJ_T0071635.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67438733 67516838 - MGP_C3HHeJ_P0071635 Atp8a1 protein_coding protein_coding MGP_C3HHeJ_T0071636.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67438733 67516838 - MGP_C3HHeJ_P0071636 Atp8a1 protein_coding protein_coding MGP_C3HHeJ_T0071637.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67445036 67516836 - Atp8a1 protein_coding retained_intron MGP_C3HHeJ_T0071638.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67474842 67478202 - Atp8a1 protein_coding retained_intron MGP_C3HHeJ_T0071639.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67481627 67484699 - Atp8a1 protein_coding retained_intron MGP_C3HHeJ_T0071640.1 MGP_C3HHeJ_G0029297.1 mouse_genomes_project 5 67481631 67485313 - MGP_C3HHeJ_P0071640 Atp8a1 protein_coding protein_coding MGP_C3HHeJ_T0008170.1 MGP_C3HHeJ_G0006649.1 mouse_genomes_project 5 108007831 108011283 - 4930432H08Rik lincRNA lincRNA MGP_C3HHeJ_T0099446.1 MGP_C3HHeJ_G0037640.1 mouse_genomes_project 5 70300690 70300797 - Gm26072 snRNA snRNA MGP_C3HHeJ_T0100701.1 MGP_C3HHeJ_G0038895.1 mouse_genomes_project 5 61531644 61531776 - Gm22273 snoRNA snoRNA MGP_C3HHeJ_T0075241.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146631969 146700096 - MGP_C3HHeJ_P0075241 Radil protein_coding protein_coding MGP_C3HHeJ_T0075242.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146631974 146700109 - Radil protein_coding retained_intron MGP_C3HHeJ_T0075243.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146631974 146694143 - MGP_C3HHeJ_P0075243 Radil protein_coding protein_coding MGP_C3HHeJ_T0075244.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146632011 146700124 - MGP_C3HHeJ_P0075244 Radil protein_coding protein_coding MGP_C3HHeJ_T0075245.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146633615 146634702 - Radil protein_coding retained_intron MGP_C3HHeJ_T0075246.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146655994 146657369 - MGP_C3HHeJ_P0075246 Radil protein_coding protein_coding MGP_C3HHeJ_T0075248.1 MGP_C3HHeJ_G0030009.1 mouse_genomes_project 5 146692732 146700012 - MGP_C3HHeJ_P0075248 Radil protein_coding protein_coding MGP_C3HHeJ_T0070406.1 MGP_C3HHeJ_G0029102.1 mouse_genomes_project 5 29144340 29152691 + MGP_C3HHeJ_P0070406 Tcf23 protein_coding protein_coding MGP_C3HHeJ_T0001774.1 MGP_C3HHeJ_G0001698.1 mouse_genomes_project 5 125425307 125428194 - TEC TEC MGP_C3HHeJ_T0075309.1 MGP_C3HHeJ_G0030023.1 mouse_genomes_project 5 147463580 147485488 - MGP_C3HHeJ_P0075309 Zfp316 protein_coding protein_coding MGP_C3HHeJ_T0075310.1 MGP_C3HHeJ_G0030023.1 mouse_genomes_project 5 147464172 147470084 - Zfp316 protein_coding retained_intron MGP_C3HHeJ_T0075311.1 MGP_C3HHeJ_G0030023.1 mouse_genomes_project 5 147467092 147478474 - MGP_C3HHeJ_P0075311 Zfp316 protein_coding protein_coding MGP_C3HHeJ_T0001867.1 MGP_C3HHeJ_G0001789.1 mouse_genomes_project 5 152901410 152902095 + TEC TEC MGP_C3HHeJ_T0098482.1 MGP_C3HHeJ_G0036687.1 mouse_genomes_project 5 1808674 1811788 - Gm43112 sense_intronic sense_intronic MGP_C3HHeJ_T0008304.1 MGP_C3HHeJ_G0006733.1 mouse_genomes_project 5 130281241 130294955 + 4930572K03Rik lincRNA lincRNA MGP_C3HHeJ_T0008305.1 MGP_C3HHeJ_G0006733.1 mouse_genomes_project 5 130281246 130294969 + 4930572K03Rik lincRNA lincRNA MGP_C3HHeJ_T0001780.1 MGP_C3HHeJ_G0001704.1 mouse_genomes_project 5 126078201 126079770 + TEC TEC MGP_C3HHeJ_T0001595.1 MGP_C3HHeJ_G0001520.1 mouse_genomes_project 5 64956446 64957213 + TEC TEC MGP_C3HHeJ_T0070070.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22339148 22346421 + MGP_C3HHeJ_P0070070 Abcb8 protein_coding protein_coding MGP_C3HHeJ_T0070071.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22339161 22356253 + MGP_C3HHeJ_P0070071 Abcb8 protein_coding protein_coding MGP_C3HHeJ_T0070072.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22339638 22356144 + MGP_C3HHeJ_P0070072 Abcb8 protein_coding protein_coding MGP_C3HHeJ_T0070073.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22339879 22350176 + Abcb8 protein_coding processed_transcript MGP_C3HHeJ_T0070074.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22339891 22346864 + Abcb8 protein_coding retained_intron MGP_C3HHeJ_T0070075.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22346796 22356146 + MGP_C3HHeJ_P0070075 Abcb8 protein_coding protein_coding MGP_C3HHeJ_T0070076.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22348452 22352910 + Abcb8 protein_coding retained_intron MGP_C3HHeJ_T0070077.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22352013 22356145 + Abcb8 protein_coding retained_intron MGP_C3HHeJ_T0070078.1 MGP_C3HHeJ_G0029037.1 mouse_genomes_project 5 22352606 22356123 + MGP_C3HHeJ_P0070078 Abcb8 protein_coding protein_coding MGP_C3HHeJ_T0001758.1 MGP_C3HHeJ_G0001682.1 mouse_genomes_project 5 121522007 121524443 - TEC TEC MGP_C3HHeJ_T0102042.1 MGP_C3HHeJ_G0040007.1 mouse_genomes_project 5 87942442 87946209 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100730.1 MGP_C3HHeJ_G0038924.1 mouse_genomes_project 5 133012495 133012626 + Snora15 snoRNA snoRNA MGP_C3HHeJ_T0074966.1 MGP_C3HHeJ_G0029950.1 mouse_genomes_project 5 141830779 141849725 - MGP_C3HHeJ_P0074966 Zfp113 protein_coding protein_coding MGP_C3HHeJ_T0074967.1 MGP_C3HHeJ_G0029950.1 mouse_genomes_project 5 141840587 141846880 - MGP_C3HHeJ_P0074967 Zfp113 protein_coding protein_coding MGP_C3HHeJ_T0074968.1 MGP_C3HHeJ_G0029950.1 mouse_genomes_project 5 141844537 141849681 - Zfp113 protein_coding retained_intron MGP_C3HHeJ_T0074969.1 MGP_C3HHeJ_G0029950.1 mouse_genomes_project 5 141844945 141849685 - MGP_C3HHeJ_P0074969 Zfp113 protein_coding protein_coding MGP_C3HHeJ_T0017915.1 MGP_C3HHeJ_G0015357.1 mouse_genomes_project 5 49388128 49489760 - Gm36814 processed_transcript lincRNA MGP_C3HHeJ_T0017916.1 MGP_C3HHeJ_G0015357.1 mouse_genomes_project 5 49469168 49488804 - Gm36814 processed_transcript retained_intron MGP_C3HHeJ_T0072071.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88226609 88235017 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072072.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88226609 88227879 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072073.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88226609 88227937 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072074.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88226628 88234626 + MGP_C3HHeJ_P0072074 Csn1s1 protein_coding protein_coding MGP_C3HHeJ_T0072075.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88226629 88243827 + MGP_C3HHeJ_P0072075 Csn1s1 protein_coding protein_coding MGP_C3HHeJ_T0072076.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88226634 88243827 + MGP_C3HHeJ_P0072076 Csn1s1 protein_coding protein_coding MGP_C3HHeJ_T0072077.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88227248 88235482 + Csn1s1 protein_coding processed_transcript MGP_C3HHeJ_T0072078.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88227634 88230139 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072079.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88231404 88237530 + MGP_C3HHeJ_P0072079 Csn1s1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072080.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88231915 88232841 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072081.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88238979 88243747 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072082.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88239958 88243773 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0072083.1 MGP_C3HHeJ_G0029388.1 mouse_genomes_project 5 88241777 88243307 + Csn1s1 protein_coding retained_intron MGP_C3HHeJ_T0099422.1 MGP_C3HHeJ_G0037616.1 mouse_genomes_project 5 20296268 20296375 - Gm22887 snRNA snRNA MGP_C3HHeJ_T0074684.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139662515 139675866 - MGP_C3HHeJ_P0074684 Lrwd1 protein_coding protein_coding MGP_C3HHeJ_T0074685.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139662810 139675793 - Lrwd1 protein_coding retained_intron MGP_C3HHeJ_T0074686.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139662818 139665303 - Lrwd1 protein_coding retained_intron MGP_C3HHeJ_T0074687.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139663435 139670044 - MGP_C3HHeJ_P0074687 Lrwd1 protein_coding protein_coding MGP_C3HHeJ_T0074688.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139669144 139675814 - Lrwd1 protein_coding retained_intron MGP_C3HHeJ_T0074689.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139670474 139675794 - Lrwd1 protein_coding retained_intron MGP_C3HHeJ_T0074690.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139671466 139675854 - Lrwd1 protein_coding retained_intron MGP_C3HHeJ_T0074691.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139672098 139673669 - Lrwd1 protein_coding retained_intron MGP_C3HHeJ_T0074692.1 MGP_C3HHeJ_G0029895.1 mouse_genomes_project 5 139672823 139675789 - MGP_C3HHeJ_P0074692 Lrwd1 protein_coding protein_coding MGP_C3HHeJ_T0008060.1 MGP_C3HHeJ_G0006565.1 mouse_genomes_project 5 60315307 60320018 - 1700014F14Rik lincRNA lincRNA MGP_C3HHeJ_T0001668.1 MGP_C3HHeJ_G0001592.1 mouse_genomes_project 5 76326517 76330693 - TEC TEC MGP_C3HHeJ_T0001815.1 MGP_C3HHeJ_G0001738.1 mouse_genomes_project 5 134886235 134887532 - TEC TEC MGP_C3HHeJ_T0071465.1 MGP_C3HHeJ_G0029275.1 mouse_genomes_project 5 64894695 64933599 + MGP_C3HHeJ_P0071465 Klb protein_coding protein_coding MGP_C3HHeJ_T0071466.1 MGP_C3HHeJ_G0029275.1 mouse_genomes_project 5 64894788 64896628 + Klb protein_coding retained_intron MGP_C3HHeJ_T0071467.1 MGP_C3HHeJ_G0029275.1 mouse_genomes_project 5 64894789 64927088 + MGP_C3HHeJ_P0071467 Klb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004741.1 MGP_C3HHeJ_G0004079.1 mouse_genomes_project 5 123243376 123244683 - Gm43579 antisense antisense MGP_C3HHeJ_T0010651.1 MGP_C3HHeJ_G0008784.1 mouse_genomes_project 5 145098641 145098722 + Gm44385 miRNA miRNA MGP_C3HHeJ_T0001699.1 MGP_C3HHeJ_G0001623.1 mouse_genomes_project 5 103138887 103140471 + TEC TEC MGP_C3HHeJ_T0072826.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445295 110459416 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0072827.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445295 110468405 - MGP_C3HHeJ_P0072827 Dgkq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072828.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445295 110459416 - MGP_C3HHeJ_P0072828 Dgkq protein_coding protein_coding MGP_C3HHeJ_T0072829.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445295 110459416 - MGP_C3HHeJ_P0072829 Dgkq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072830.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445295 110459416 - MGP_C3HHeJ_P0072830 Dgkq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072831.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445649 110459416 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0072832.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445649 110452268 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0072833.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110445876 110448539 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0072834.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110449470 110452112 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0072835.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110452112 110453736 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0072836.1 MGP_C3HHeJ_G0029559.1 mouse_genomes_project 5 110453146 110454600 - Dgkq protein_coding retained_intron MGP_C3HHeJ_T0004670.1 MGP_C3HHeJ_G0004033.1 mouse_genomes_project 5 100894655 100929772 + Gm16226 antisense antisense MGP_C3HHeJ_T0004671.1 MGP_C3HHeJ_G0004033.1 mouse_genomes_project 5 100894655 100902568 + Gm16226 antisense antisense MGP_C3HHeJ_T0004672.1 MGP_C3HHeJ_G0004033.1 mouse_genomes_project 5 100894660 100929774 + Gm16226 antisense antisense MGP_C3HHeJ_T0004673.1 MGP_C3HHeJ_G0004033.1 mouse_genomes_project 5 100894684 100929770 + Gm16226 antisense antisense MGP_C3HHeJ_T0008180.1 MGP_C3HHeJ_G0006658.1 mouse_genomes_project 5 110145474 110146412 - Gm42518 lincRNA lincRNA MGP_C3HHeJ_T0072084.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254475 88261478 - MGP_C3HHeJ_P0072084 Csn2 protein_coding protein_coding MGP_C3HHeJ_T0072085.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254476 88261257 - Csn2 protein_coding retained_intron MGP_C3HHeJ_T0072086.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254479 88258504 - Csn2 protein_coding retained_intron MGP_C3HHeJ_T0072087.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254479 88261273 - MGP_C3HHeJ_P0072087 Csn2 protein_coding protein_coding MGP_C3HHeJ_T0072088.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254656 88261257 - MGP_C3HHeJ_P0072088 Csn2 protein_coding protein_coding MGP_C3HHeJ_T0072089.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254720 88261269 - MGP_C3HHeJ_P0072089 Csn2 protein_coding protein_coding MGP_C3HHeJ_T0072090.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88254780 88261269 - MGP_C3HHeJ_P0072090 Csn2 protein_coding protein_coding MGP_C3HHeJ_T0072091.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88255687 88259940 - MGP_C3HHeJ_P0072091 Csn2 protein_coding protein_coding MGP_C3HHeJ_T0072092.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88256411 88258379 - Csn2 protein_coding processed_transcript MGP_C3HHeJ_T0072093.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88259656 88261269 - Csn2 protein_coding retained_intron MGP_C3HHeJ_T0072094.1 MGP_C3HHeJ_G0029389.1 mouse_genomes_project 5 88259740 88261269 - Csn2 protein_coding retained_intron MGP_C3HHeJ_T0072222.1 MGP_C3HHeJ_G0029431.1 mouse_genomes_project 5 91654356 91656424 + MGP_C3HHeJ_P0072222 Cxcl2 protein_coding protein_coding MGP_C3HHeJ_T0072223.1 MGP_C3HHeJ_G0029431.1 mouse_genomes_project 5 91654358 91656424 + Cxcl2 protein_coding retained_intron MGP_C3HHeJ_T0072224.1 MGP_C3HHeJ_G0029431.1 mouse_genomes_project 5 91654358 91654847 + Cxcl2 protein_coding retained_intron MGP_C3HHeJ_T0072225.1 MGP_C3HHeJ_G0029431.1 mouse_genomes_project 5 91654358 91656424 + MGP_C3HHeJ_P0072225 Cxcl2 protein_coding protein_coding MGP_C3HHeJ_T0008389.1 MGP_C3HHeJ_G0006795.1 mouse_genomes_project 5 154684737 154687400 - Gm43450 lincRNA lincRNA MGP_C3HHeJ_T0075645.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153959600 153990060 + MGP_C3HHeJ_P0075645 Uspl1 protein_coding protein_coding MGP_C3HHeJ_T0075646.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153959611 153969261 + MGP_C3HHeJ_P0075646 Uspl1 protein_coding protein_coding MGP_C3HHeJ_T0075647.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153959611 153990060 + MGP_C3HHeJ_P0075647 Uspl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075648.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153959668 153990071 + MGP_C3HHeJ_P0075648 Uspl1 protein_coding protein_coding MGP_C3HHeJ_T0075649.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153959714 153969028 + Uspl1 protein_coding processed_transcript MGP_C3HHeJ_T0075650.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153961186 153963938 + Uspl1 protein_coding retained_intron MGP_C3HHeJ_T0075651.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153963792 153965074 + Uspl1 protein_coding retained_intron MGP_C3HHeJ_T0075652.1 MGP_C3HHeJ_G0030096.1 mouse_genomes_project 5 153966269 153990064 + Uspl1 protein_coding retained_intron MGP_C3HHeJ_T0073853.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125822314 125948731 - MGP_C3HHeJ_P0073853 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073854.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125822314 125948113 - MGP_C3HHeJ_P0073854 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073855.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125822316 125853241 - MGP_C3HHeJ_P0073855 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073856.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125822327 125948938 - MGP_C3HHeJ_P0073856 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073857.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125823378 125949426 - MGP_C3HHeJ_P0073857 Kdm2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073858.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125827551 125833152 - Kdm2b protein_coding retained_intron MGP_C3HHeJ_T0073859.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125832574 125841513 - MGP_C3HHeJ_P0073859 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073860.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125832701 125834300 - Kdm2b protein_coding retained_intron MGP_C3HHeJ_T0073861.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125834282 125871549 - Kdm2b protein_coding processed_transcript MGP_C3HHeJ_T0073862.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125835494 125875932 - Kdm2b protein_coding processed_transcript MGP_C3HHeJ_T0073863.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125835504 125875373 - Kdm2b protein_coding retained_intron MGP_C3HHeJ_T0073864.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125840779 125948724 - Kdm2b protein_coding retained_intron MGP_C3HHeJ_T0073865.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125889034 125948168 - MGP_C3HHeJ_P0073865 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073866.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125889137 125908975 - MGP_C3HHeJ_P0073866 Kdm2b protein_coding protein_coding MGP_C3HHeJ_T0073867.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125889220 125904471 - Kdm2b protein_coding processed_transcript MGP_C3HHeJ_T0073868.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125891398 125909586 - Kdm2b protein_coding processed_transcript MGP_C3HHeJ_T0073869.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125891418 125908459 - Kdm2b protein_coding processed_transcript MGP_C3HHeJ_T0073870.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125897102 125948731 - Kdm2b protein_coding retained_intron MGP_C3HHeJ_T0073871.1 MGP_C3HHeJ_G0029753.1 mouse_genomes_project 5 125904211 125943756 - Kdm2b protein_coding processed_transcript MGP_C3HHeJ_T0001648.1 MGP_C3HHeJ_G0001573.1 mouse_genomes_project 5 72785034 72787390 - TEC TEC MGP_C3HHeJ_T0001649.1 MGP_C3HHeJ_G0001573.1 mouse_genomes_project 5 72786743 72787390 - TEC pseudogene MGP_C3HHeJ_T0001691.1 MGP_C3HHeJ_G0001615.1 mouse_genomes_project 5 99174258 99175815 - TEC TEC MGP_C3HHeJ_T0001816.1 MGP_C3HHeJ_G0001739.1 mouse_genomes_project 5 134904366 134905066 - TEC TEC MGP_C3HHeJ_T0004777.1 MGP_C3HHeJ_G0004106.1 mouse_genomes_project 5 137816944 137818985 + Gm42882 antisense antisense MGP_C3HHeJ_T0004780.1 MGP_C3HHeJ_G0004108.1 mouse_genomes_project 5 138069941 138073597 + Gm10369 antisense antisense MGP_C3HHeJ_T0008238.1 MGP_C3HHeJ_G0006689.1 mouse_genomes_project 5 118684571 118686786 + Gm13839 lincRNA lincRNA MGP_C3HHeJ_T0014865.1 MGP_C3HHeJ_G0012969.1 mouse_genomes_project 5 87487681 87489274 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073352.1 MGP_C3HHeJ_G0029666.1 mouse_genomes_project 5 117803810 117813332 - MGP_C3HHeJ_P0073352 Sirt4 protein_coding protein_coding MGP_C3HHeJ_T0073353.1 MGP_C3HHeJ_G0029666.1 mouse_genomes_project 5 117803810 117813760 - MGP_C3HHeJ_P0073353 Sirt4 protein_coding protein_coding MGP_C3HHeJ_T0073354.1 MGP_C3HHeJ_G0029666.1 mouse_genomes_project 5 117803813 117807223 - Sirt4 protein_coding retained_intron MGP_C3HHeJ_T0073355.1 MGP_C3HHeJ_G0029666.1 mouse_genomes_project 5 117807444 117811891 - Sirt4 protein_coding retained_intron MGP_C3HHeJ_T0073356.1 MGP_C3HHeJ_G0029666.1 mouse_genomes_project 5 117807515 117813380 - Sirt4 protein_coding processed_transcript MGP_C3HHeJ_T0073357.1 MGP_C3HHeJ_G0029666.1 mouse_genomes_project 5 117811496 117813401 - Sirt4 protein_coding retained_intron MGP_C3HHeJ_T0074636.1 MGP_C3HHeJ_G0029886.1 mouse_genomes_project 5 139391086 139396805 + MGP_C3HHeJ_P0074636 Hspb1 protein_coding protein_coding MGP_C3HHeJ_T0074637.1 MGP_C3HHeJ_G0029886.1 mouse_genomes_project 5 139391185 139396803 + MGP_C3HHeJ_P0074637 Hspb1 protein_coding protein_coding MGP_C3HHeJ_T0008033.1 MGP_C3HHeJ_G0006540.1 mouse_genomes_project 5 41627513 41639202 - Gm43700 lincRNA lincRNA MGP_C3HHeJ_T0014721.1 MGP_C3HHeJ_G0012825.1 mouse_genomes_project 5 20716849 20717430 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098495.1 MGP_C3HHeJ_G0036700.1 mouse_genomes_project 5 73142391 73144881 - Gm17207 sense_intronic sense_intronic MGP_C3HHeJ_T0001434.1 MGP_C3HHeJ_G0001364.1 mouse_genomes_project 5 18719122 18720455 + TEC TEC MGP_C3HHeJ_T0008318.1 MGP_C3HHeJ_G0006740.1 mouse_genomes_project 5 132563036 132564196 + Gm43001 lincRNA lincRNA MGP_C3HHeJ_T0008319.1 MGP_C3HHeJ_G0006740.1 mouse_genomes_project 5 132563594 132564107 + Gm43001 lincRNA lincRNA MGP_C3HHeJ_T0001440.1 MGP_C3HHeJ_G0001370.1 mouse_genomes_project 5 22095106 22097701 + TEC TEC MGP_C3HHeJ_T0001554.1 MGP_C3HHeJ_G0001480.1 mouse_genomes_project 5 50862288 50866734 - TEC TEC MGP_C3HHeJ_T0075511.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150734342 150747760 - MGP_C3HHeJ_P0075511 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075512.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150734346 150747066 - MGP_C3HHeJ_P0075512 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075513.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150735106 150747141 - MGP_C3HHeJ_P0075513 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075514.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150736452 150744183 - MGP_C3HHeJ_P0075514 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075515.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150736825 150747623 - MGP_C3HHeJ_P0075515 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075516.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150736853 150747100 - MGP_C3HHeJ_P0075516 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075517.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150737002 150747113 - MGP_C3HHeJ_P0075517 Rnf6 protein_coding protein_coding MGP_C3HHeJ_T0075518.1 MGP_C3HHeJ_G0030070.1 mouse_genomes_project 5 150744272 150747111 - Rnf6 protein_coding processed_transcript MGP_C3HHeJ_T0072693.1 MGP_C3HHeJ_G0029532.1 mouse_genomes_project 5 108778061 108961285 - MGP_C3HHeJ_P0072693 Tgfbr3 protein_coding protein_coding MGP_C3HHeJ_T0072694.1 MGP_C3HHeJ_G0029532.1 mouse_genomes_project 5 108780771 108866277 - Tgfbr3 protein_coding processed_transcript MGP_C3HHeJ_T0072695.1 MGP_C3HHeJ_G0029532.1 mouse_genomes_project 5 108790608 108805274 - MGP_C3HHeJ_P0072695 Tgfbr3 protein_coding protein_coding MGP_C3HHeJ_T0072696.1 MGP_C3HHeJ_G0029532.1 mouse_genomes_project 5 108820827 108961251 - Tgfbr3 protein_coding retained_intron MGP_C3HHeJ_T0072063.1 MGP_C3HHeJ_G0029384.1 mouse_genomes_project 5 88016408 88043724 - MGP_C3HHeJ_P0072063 Gm43638 protein_coding protein_coding MGP_C3HHeJ_T0072060.1 MGP_C3HHeJ_G0029381.1 mouse_genomes_project 5 87889467 87901541 - MGP_C3HHeJ_P0072060 Ugt2a3 protein_coding protein_coding MGP_C3HHeJ_T0008035.1 MGP_C3HHeJ_G0006542.1 mouse_genomes_project 5 41943218 41945407 - Gm43020 lincRNA lincRNA MGP_C3HHeJ_T0074100.1 MGP_C3HHeJ_G0029790.1 mouse_genomes_project 5 127537407 127545384 + MGP_C3HHeJ_P0074100 Snrnp35 protein_coding protein_coding MGP_C3HHeJ_T0074101.1 MGP_C3HHeJ_G0029790.1 mouse_genomes_project 5 127537475 127544750 + MGP_C3HHeJ_P0074101 Snrnp35 protein_coding protein_coding MGP_C3HHeJ_T0074102.1 MGP_C3HHeJ_G0029790.1 mouse_genomes_project 5 127537731 127545367 + MGP_C3HHeJ_P0074102 Snrnp35 protein_coding protein_coding MGP_C3HHeJ_T0008286.1 MGP_C3HHeJ_G0006724.1 mouse_genomes_project 5 129029745 129033703 - Gm42945 lincRNA lincRNA MGP_C3HHeJ_T0008287.1 MGP_C3HHeJ_G0006724.1 mouse_genomes_project 5 129029759 129037187 - Gm42945 lincRNA lincRNA MGP_C3HHeJ_T0075728.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155470175 155511215 - N4bp2l2 protein_coding processed_transcript MGP_C3HHeJ_T0075729.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155498948 155529792 - MGP_C3HHeJ_P0075729 N4bp2l2 protein_coding protein_coding MGP_C3HHeJ_T0075730.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155503712 155511957 - N4bp2l2 protein_coding retained_intron MGP_C3HHeJ_T0075731.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155505976 155525666 - MGP_C3HHeJ_P0075731 N4bp2l2 protein_coding protein_coding MGP_C3HHeJ_T0075732.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155505989 155511489 - N4bp2l2 protein_coding retained_intron MGP_C3HHeJ_T0075733.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155511905 155529757 - N4bp2l2 protein_coding retained_intron MGP_C3HHeJ_T0075734.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155526595 155529525 - MGP_C3HHeJ_P0075734 N4bp2l2 protein_coding protein_coding MGP_C3HHeJ_T0075735.1 MGP_C3HHeJ_G0030108.1 mouse_genomes_project 5 155529353 155530363 - N4bp2l2 protein_coding retained_intron MGP_C3HHeJ_T0014699.1 MGP_C3HHeJ_G0012803.1 mouse_genomes_project 5 17894146 17894486 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072050.1 MGP_C3HHeJ_G0029375.1 mouse_genomes_project 5 87415545 87436879 - MGP_C3HHeJ_P0072050 Ugt2b34 protein_coding protein_coding MGP_C3HHeJ_T0072051.1 MGP_C3HHeJ_G0029375.1 mouse_genomes_project 5 87415545 87436879 - MGP_C3HHeJ_P0072051 Ugt2b34 protein_coding protein_coding MGP_C3HHeJ_T0098483.1 MGP_C3HHeJ_G0036688.1 mouse_genomes_project 5 1815513 1817247 - Gm43113 sense_intronic sense_intronic MGP_C3HHeJ_T0001683.1 MGP_C3HHeJ_G0001607.1 mouse_genomes_project 5 94013965 94016055 + TEC TEC MGP_C3HHeJ_T0014805.1 MGP_C3HHeJ_G0012909.1 mouse_genomes_project 5 56539002 56539738 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010637.1 MGP_C3HHeJ_G0008770.1 mouse_genomes_project 5 139331249 139331327 - Gm23268 miRNA miRNA MGP_C3HHeJ_T0075079.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127354 143179556 + MGP_C3HHeJ_P0075079 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075080.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127360 143179511 + MGP_C3HHeJ_P0075080 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075081.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127377 143179511 + MGP_C3HHeJ_P0075081 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075082.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127384 143157187 + Sun1 protein_coding retained_intron MGP_C3HHeJ_T0075083.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127384 143157188 + MGP_C3HHeJ_P0075083 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075084.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127386 143152587 + MGP_C3HHeJ_P0075084 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075085.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127388 143155446 + MGP_C3HHeJ_P0075085 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075086.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127392 143144622 + Sun1 protein_coding retained_intron MGP_C3HHeJ_T0075087.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127397 143178265 + MGP_C3HHeJ_P0075087 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075088.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143127402 143155452 + MGP_C3HHeJ_P0075088 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075089.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143140786 143141134 + Sun1 protein_coding processed_transcript MGP_C3HHeJ_T0075090.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143140818 143154245 + MGP_C3HHeJ_P0075090 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075091.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143140872 143178359 + MGP_C3HHeJ_P0075091 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075092.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143141112 143154209 + MGP_C3HHeJ_P0075092 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075093.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143152525 143159680 + Sun1 protein_coding processed_transcript MGP_C3HHeJ_T0075094.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143154123 143158787 + MGP_C3HHeJ_P0075094 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075095.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143155590 143164473 + MGP_C3HHeJ_P0075095 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075096.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143159951 143163391 + Sun1 protein_coding retained_intron MGP_C3HHeJ_T0075097.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143164424 143175083 + MGP_C3HHeJ_P0075097 Sun1 protein_coding protein_coding MGP_C3HHeJ_T0075098.1 MGP_C3HHeJ_G0029974.1 mouse_genomes_project 5 143170201 143178222 + MGP_C3HHeJ_P0075098 Sun1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001689.1 MGP_C3HHeJ_G0001613.1 mouse_genomes_project 5 98083334 98083819 + TEC TEC MGP_C3HHeJ_T0010652.1 MGP_C3HHeJ_G0008785.1 mouse_genomes_project 5 145150460 145150539 + Gm26113 miRNA miRNA MGP_C3HHeJ_T0070621.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30487212 30589406 + Plb1 protein_coding retained_intron MGP_C3HHeJ_T0070622.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30487214 30505991 + Plb1 protein_coding processed_transcript MGP_C3HHeJ_T0070623.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30487214 30490110 + Plb1 protein_coding retained_intron MGP_C3HHeJ_T0070624.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30487218 30624966 + MGP_C3HHeJ_P0070624 Plb1 protein_coding protein_coding MGP_C3HHeJ_T0070625.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30487252 30551839 + Plb1 protein_coding retained_intron MGP_C3HHeJ_T0070626.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30494929 30580596 + MGP_C3HHeJ_P0070626 Plb1 protein_coding protein_coding MGP_C3HHeJ_T0070627.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30503200 30624968 + MGP_C3HHeJ_P0070627 Plb1 protein_coding protein_coding MGP_C3HHeJ_T0070628.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30612562 30627132 + Plb1 protein_coding processed_transcript MGP_C3HHeJ_T0070629.1 MGP_C3HHeJ_G0029132.1 mouse_genomes_project 5 30613681 30624961 + Plb1 protein_coding processed_transcript MGP_C3HHeJ_T0074223.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131910751 131976413 - MGP_C3HHeJ_P0074223 Rimbp2 protein_coding protein_coding MGP_C3HHeJ_T0074224.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131910755 131976366 - MGP_C3HHeJ_P0074224 Rimbp2 protein_coding protein_coding MGP_C3HHeJ_T0074225.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131913375 132124589 - MGP_C3HHeJ_P0074225 Rimbp2 protein_coding protein_coding MGP_C3HHeJ_T0074226.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131913375 132124740 - MGP_C3HHeJ_P0074226 Rimbp2 protein_coding protein_coding MGP_C3HHeJ_T0074227.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131913656 132124864 - MGP_C3HHeJ_P0074227 Rimbp2 protein_coding protein_coding MGP_C3HHeJ_T0074228.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131962809 132040500 - MGP_C3HHeJ_P0074228 Rimbp2 protein_coding protein_coding MGP_C3HHeJ_T0074229.1 MGP_C3HHeJ_G0029815.1 mouse_genomes_project 5 131996343 132124567 - Rimbp2 protein_coding processed_transcript MGP_C3HHeJ_T0075259.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146893715 146960790 - MGP_C3HHeJ_P0075259 protein_coding protein_coding MGP_C3HHeJ_T0075260.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146901159 146905679 - protein_coding processed_transcript MGP_C3HHeJ_T0075261.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146902014 146906222 - protein_coding retained_intron MGP_C3HHeJ_T0075262.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146925487 146989977 - MGP_C3HHeJ_P0075262 protein_coding protein_coding MGP_C3HHeJ_T0075263.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146935009 146936717 - protein_coding retained_intron MGP_C3HHeJ_T0075264.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146960575 146972684 - protein_coding processed_transcript MGP_C3HHeJ_T0075265.1 MGP_C3HHeJ_G0030014.1 mouse_genomes_project 5 146965257 146989695 - MGP_C3HHeJ_P0075265 protein_coding protein_coding MGP_C3HHeJ_T0001671.1 MGP_C3HHeJ_G0001595.1 mouse_genomes_project 5 81942282 81943229 + TEC TEC MGP_C3HHeJ_T0102034.1 MGP_C3HHeJ_G0039999.1 mouse_genomes_project 5 84299452 84300041 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0074571.1 MGP_C3HHeJ_G0029873.1 mouse_genomes_project 5 138743089 138803869 - MGP_C3HHeJ_P0074571 Fkbp6 protein_coding protein_coding MGP_C3HHeJ_T0074572.1 MGP_C3HHeJ_G0029873.1 mouse_genomes_project 5 138743089 138803839 - MGP_C3HHeJ_P0074572 Fkbp6 protein_coding protein_coding MGP_C3HHeJ_T0074573.1 MGP_C3HHeJ_G0029873.1 mouse_genomes_project 5 138790979 138803700 - MGP_C3HHeJ_P0074573 Fkbp6 protein_coding protein_coding MGP_C3HHeJ_T0074574.1 MGP_C3HHeJ_G0029873.1 mouse_genomes_project 5 138790979 138803868 - MGP_C3HHeJ_P0074574 Fkbp6 protein_coding protein_coding MGP_C3HHeJ_T0072023.1 MGP_C3HHeJ_G0029366.1 mouse_genomes_project 5 86711137 86727943 - MGP_C3HHeJ_P0072023 Gnrhr protein_coding protein_coding MGP_C3HHeJ_T0072024.1 MGP_C3HHeJ_G0029366.1 mouse_genomes_project 5 86712378 86727912 - MGP_C3HHeJ_P0072024 Gnrhr protein_coding protein_coding MGP_C3HHeJ_T0072025.1 MGP_C3HHeJ_G0029366.1 mouse_genomes_project 5 86715007 86727888 - MGP_C3HHeJ_P0072025 Gnrhr protein_coding protein_coding MGP_C3HHeJ_T0071774.1 MGP_C3HHeJ_G0029324.1 mouse_genomes_project 5 73258425 73274643 - MGP_C3HHeJ_P0071774 Ociad2 protein_coding protein_coding MGP_C3HHeJ_T0071775.1 MGP_C3HHeJ_G0029324.1 mouse_genomes_project 5 73258427 73274992 - MGP_C3HHeJ_P0071775 Ociad2 protein_coding protein_coding MGP_C3HHeJ_T0071776.1 MGP_C3HHeJ_G0029324.1 mouse_genomes_project 5 73258427 73274989 - MGP_C3HHeJ_P0071776 Ociad2 protein_coding protein_coding MGP_C3HHeJ_T0071777.1 MGP_C3HHeJ_G0029324.1 mouse_genomes_project 5 73259560 73274599 - MGP_C3HHeJ_P0071777 Ociad2 protein_coding protein_coding MGP_C3HHeJ_T0001854.1 MGP_C3HHeJ_G0001776.1 mouse_genomes_project 5 144140698 144144336 - TEC TEC MGP_C3HHeJ_T0001563.1 MGP_C3HHeJ_G0001489.1 mouse_genomes_project 5 53033346 53037397 + TEC TEC MGP_C3HHeJ_T0100715.1 MGP_C3HHeJ_G0038909.1 mouse_genomes_project 5 92991590 92991734 + Gm25290 snoRNA snoRNA MGP_C3HHeJ_T0070127.1 MGP_C3HHeJ_G0029045.1 mouse_genomes_project 5 22489020 22496779 - MGP_C3HHeJ_P0070127 Asb10 protein_coding protein_coding MGP_C3HHeJ_T0070128.1 MGP_C3HHeJ_G0029045.1 mouse_genomes_project 5 22489954 22497300 - MGP_C3HHeJ_P0070128 Asb10 protein_coding protein_coding MGP_C3HHeJ_T0070129.1 MGP_C3HHeJ_G0029045.1 mouse_genomes_project 5 22489972 22496914 - MGP_C3HHeJ_P0070129 Asb10 protein_coding protein_coding MGP_C3HHeJ_T0073297.1 MGP_C3HHeJ_G0029654.1 mouse_genomes_project 5 117438485 117453629 - MGP_C3HHeJ_P0073297 Mlec protein_coding protein_coding MGP_C3HHeJ_T0073298.1 MGP_C3HHeJ_G0029654.1 mouse_genomes_project 5 117443618 117446479 - Mlec protein_coding processed_transcript MGP_C3HHeJ_T0072166.1 MGP_C3HHeJ_G0029415.1 mouse_genomes_project 5 90192901 90254183 + MGP_C3HHeJ_P0072166 Npffr2 protein_coding protein_coding MGP_C3HHeJ_T0004806.1 MGP_C3HHeJ_G0004126.1 mouse_genomes_project 5 145466452 145474200 - Gm16035 antisense antisense MGP_C3HHeJ_T0008364.1 MGP_C3HHeJ_G0006779.1 mouse_genomes_project 5 153505757 153513686 + 4930505K14Rik lincRNA lincRNA MGP_C3HHeJ_T0001404.1 MGP_C3HHeJ_G0001334.1 mouse_genomes_project 5 5671181 5673575 - TEC TEC MGP_C3HHeJ_T0001525.1 MGP_C3HHeJ_G0001452.1 mouse_genomes_project 5 47602096 47605898 - TEC TEC MGP_C3HHeJ_T0075228.1 MGP_C3HHeJ_G0030006.1 mouse_genomes_project 5 145332006 146344437 + MGP_C3HHeJ_P0075228 Sdk1 protein_coding protein_coding MGP_C3HHeJ_T0075229.1 MGP_C3HHeJ_G0030006.1 mouse_genomes_project 5 145332434 145689139 + Sdk1 protein_coding retained_intron MGP_C3HHeJ_T0075230.1 MGP_C3HHeJ_G0030006.1 mouse_genomes_project 5 145466927 146071651 + Sdk1 protein_coding retained_intron MGP_C3HHeJ_T0075231.1 MGP_C3HHeJ_G0030006.1 mouse_genomes_project 5 145968142 146342044 + MGP_C3HHeJ_P0075231 Sdk1 protein_coding protein_coding MGP_C3HHeJ_T0074317.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133202601 133216610 - MGP_C3HHeJ_P0074317 Asl protein_coding protein_coding MGP_C3HHeJ_T0074318.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133202837 133206066 - MGP_C3HHeJ_P0074318 Asl protein_coding protein_coding MGP_C3HHeJ_T0074319.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133202838 133221579 - MGP_C3HHeJ_P0074319 Asl protein_coding protein_coding MGP_C3HHeJ_T0074320.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133202847 133217406 - MGP_C3HHeJ_P0074320 Asl protein_coding protein_coding MGP_C3HHeJ_T0074321.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133204790 133216529 - MGP_C3HHeJ_P0074321 Asl protein_coding protein_coding MGP_C3HHeJ_T0074322.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133208097 133216602 - Asl protein_coding processed_transcript MGP_C3HHeJ_T0074323.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133211947 133216546 - MGP_C3HHeJ_P0074323 Asl protein_coding protein_coding MGP_C3HHeJ_T0074324.1 MGP_C3HHeJ_G0029832.1 mouse_genomes_project 5 133214522 133216574 - Asl protein_coding retained_intron MGP_C3HHeJ_T0014668.1 MGP_C3HHeJ_G0012772.1 mouse_genomes_project 5 3453705 3454060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099477.1 MGP_C3HHeJ_G0037671.1 mouse_genomes_project 5 117819911 117820052 + Gm24265 snRNA snRNA MGP_C3HHeJ_T0071408.1 MGP_C3HHeJ_G0029264.1 mouse_genomes_project 5 63387873 63452635 - MGP_C3HHeJ_P0071408 Rell1 protein_coding protein_coding MGP_C3HHeJ_T0071409.1 MGP_C3HHeJ_G0029264.1 mouse_genomes_project 5 63388042 63452561 - MGP_C3HHeJ_P0071409 Rell1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071410.1 MGP_C3HHeJ_G0029264.1 mouse_genomes_project 5 63405278 63412460 - Rell1 protein_coding processed_transcript MGP_C3HHeJ_T0071411.1 MGP_C3HHeJ_G0029264.1 mouse_genomes_project 5 63407533 63412323 - Rell1 protein_coding retained_intron MGP_C3HHeJ_T0071412.1 MGP_C3HHeJ_G0029264.1 mouse_genomes_project 5 63442962 63452577 - Rell1 protein_coding processed_transcript MGP_C3HHeJ_T0008012.1 MGP_C3HHeJ_G0006529.1 mouse_genomes_project 5 34927155 34947091 - 2210406O10Rik lincRNA lincRNA MGP_C3HHeJ_T0008013.1 MGP_C3HHeJ_G0006529.1 mouse_genomes_project 5 34934288 34947082 - 2210406O10Rik lincRNA lincRNA MGP_C3HHeJ_T0008014.1 MGP_C3HHeJ_G0006529.1 mouse_genomes_project 5 34935810 34947081 - 2210406O10Rik lincRNA lincRNA MGP_C3HHeJ_T0008015.1 MGP_C3HHeJ_G0006529.1 mouse_genomes_project 5 34940069 34947123 - 2210406O10Rik lincRNA lincRNA MGP_C3HHeJ_T0075362.1 MGP_C3HHeJ_G0030036.1 mouse_genomes_project 5 148095436 148102636 - MGP_C3HHeJ_P0075362 Aimp2 protein_coding protein_coding MGP_C3HHeJ_T0075363.1 MGP_C3HHeJ_G0030036.1 mouse_genomes_project 5 148095436 148102644 - MGP_C3HHeJ_P0075363 Aimp2 protein_coding protein_coding MGP_C3HHeJ_T0075364.1 MGP_C3HHeJ_G0030036.1 mouse_genomes_project 5 148098820 148102581 - Aimp2 protein_coding retained_intron MGP_C3HHeJ_T0075365.1 MGP_C3HHeJ_G0030036.1 mouse_genomes_project 5 148099105 148102585 - Aimp2 protein_coding retained_intron MGP_C3HHeJ_T0075317.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147532244 147545740 - MGP_C3HHeJ_P0075317 Zdhhc4 protein_coding protein_coding MGP_C3HHeJ_T0075318.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147532245 147545704 - MGP_C3HHeJ_P0075318 Zdhhc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075319.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147532252 147542026 - MGP_C3HHeJ_P0075319 Zdhhc4 protein_coding protein_coding MGP_C3HHeJ_T0075320.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147536137 147545695 - Zdhhc4 protein_coding processed_transcript MGP_C3HHeJ_T0075321.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147536192 147545707 - MGP_C3HHeJ_P0075321 Zdhhc4 protein_coding protein_coding MGP_C3HHeJ_T0075322.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147536198 147545698 - MGP_C3HHeJ_P0075322 Zdhhc4 protein_coding protein_coding MGP_C3HHeJ_T0075323.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147539804 147545713 - MGP_C3HHeJ_P0075323 Zdhhc4 protein_coding protein_coding MGP_C3HHeJ_T0075324.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147539891 147545713 - Zdhhc4 protein_coding processed_transcript MGP_C3HHeJ_T0075325.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147539906 147545712 - MGP_C3HHeJ_P0075325 Zdhhc4 protein_coding protein_coding MGP_C3HHeJ_T0075326.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147540004 147545053 - Zdhhc4 protein_coding retained_intron MGP_C3HHeJ_T0075327.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147541664 147545673 - Zdhhc4 protein_coding processed_transcript MGP_C3HHeJ_T0075328.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147541727 147545676 - Zdhhc4 protein_coding processed_transcript MGP_C3HHeJ_T0075329.1 MGP_C3HHeJ_G0030026.1 mouse_genomes_project 5 147544778 147545686 - Zdhhc4 protein_coding processed_transcript MGP_C3HHeJ_T0001584.1 MGP_C3HHeJ_G0001510.1 mouse_genomes_project 5 58369978 58372225 + TEC TEC MGP_C3HHeJ_T0008322.1 MGP_C3HHeJ_G0006743.1 mouse_genomes_project 5 135814584 135819135 + Gm42626 lincRNA lincRNA MGP_C3HHeJ_T0073080.1 MGP_C3HHeJ_G0029612.1 mouse_genomes_project 5 115321135 115334542 + MGP_C3HHeJ_P0073080 Tmem211 protein_coding protein_coding MGP_C3HHeJ_T0004807.1 MGP_C3HHeJ_G0004127.1 mouse_genomes_project 5 145703106 145719575 - Gm16036 antisense antisense MGP_C3HHeJ_T0010618.1 MGP_C3HHeJ_G0008751.1 mouse_genomes_project 5 113001192 113001301 + Mir701 miRNA miRNA MGP_C3HHeJ_T0001692.1 MGP_C3HHeJ_G0001616.1 mouse_genomes_project 5 99201493 99203929 + TEC TEC MGP_C3HHeJ_T0071296.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48888512 48989769 - MGP_C3HHeJ_P0071296 Adgra3 protein_coding protein_coding MGP_C3HHeJ_T0071297.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48894664 48900629 - Adgra3 protein_coding processed_transcript MGP_C3HHeJ_T0071298.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48916146 48929887 - Adgra3 protein_coding processed_transcript MGP_C3HHeJ_T0071299.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48937840 48940424 - Adgra3 protein_coding retained_intron MGP_C3HHeJ_T0071300.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48981147 48984136 - Adgra3 protein_coding retained_intron MGP_C3HHeJ_T0071301.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48981627 48989408 - Adgra3 protein_coding processed_transcript MGP_C3HHeJ_T0071302.1 MGP_C3HHeJ_G0029241.1 mouse_genomes_project 5 48988886 48989408 - Adgra3 protein_coding retained_intron MGP_C3HHeJ_T0008157.1 MGP_C3HHeJ_G0006641.1 mouse_genomes_project 5 104706512 104708905 - 5430427N15Rik lincRNA lincRNA MGP_C3HHeJ_T0004643.1 MGP_C3HHeJ_G0004013.1 mouse_genomes_project 5 73973772 73992285 + Usp46os1 antisense antisense MGP_C3HHeJ_T0014938.1 MGP_C3HHeJ_G0013042.1 mouse_genomes_project 5 111638608 111638971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014970.1 MGP_C3HHeJ_G0013074.1 mouse_genomes_project 5 126478247 126478625 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069971.1 MGP_C3HHeJ_G0029019.1 mouse_genomes_project 5 19488303 19518655 - MGP_C3HHeJ_P0069971 Dnajc2 protein_coding protein_coding MGP_C3HHeJ_T0069972.1 MGP_C3HHeJ_G0029019.1 mouse_genomes_project 5 19488305 19518523 - MGP_C3HHeJ_P0069972 Dnajc2 protein_coding protein_coding MGP_C3HHeJ_T0069973.1 MGP_C3HHeJ_G0029019.1 mouse_genomes_project 5 19488312 19518641 - Dnajc2 protein_coding retained_intron MGP_C3HHeJ_T0069974.1 MGP_C3HHeJ_G0029019.1 mouse_genomes_project 5 19498673 19500691 - Dnajc2 protein_coding retained_intron MGP_C3HHeJ_T0069975.1 MGP_C3HHeJ_G0029019.1 mouse_genomes_project 5 19505218 19518625 - Dnajc2 protein_coding retained_intron MGP_C3HHeJ_T0069976.1 MGP_C3HHeJ_G0029019.1 mouse_genomes_project 5 19506203 19518656 - MGP_C3HHeJ_P0069976 Dnajc2 protein_coding protein_coding MGP_C3HHeJ_T0069637.1 MGP_C3HHeJ_G0028963.1 mouse_genomes_project 5 516747 539293 + MGP_C3HHeJ_P0069637 Tmbim7 protein_coding protein_coding MGP_C3HHeJ_T0069638.1 MGP_C3HHeJ_G0028963.1 mouse_genomes_project 5 523263 544907 + MGP_C3HHeJ_P0069638 Tmbim7 protein_coding protein_coding MGP_C3HHeJ_T0069639.1 MGP_C3HHeJ_G0028963.1 mouse_genomes_project 5 523438 533457 + Tmbim7 protein_coding retained_intron MGP_C3HHeJ_T0069640.1 MGP_C3HHeJ_G0028963.1 mouse_genomes_project 5 523439 545035 + MGP_C3HHeJ_P0069640 Tmbim7 protein_coding protein_coding MGP_C3HHeJ_T0069641.1 MGP_C3HHeJ_G0028963.1 mouse_genomes_project 5 528110 545816 + MGP_C3HHeJ_P0069641 Tmbim7 protein_coding protein_coding MGP_C3HHeJ_T0014730.1 MGP_C3HHeJ_G0012834.1 mouse_genomes_project 5 23110900 23111466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0070303.1 MGP_C3HHeJ_G0029084.1 mouse_genomes_project 5 28373131 28386603 - MGP_C3HHeJ_P0070303 Adgrf3 protein_coding protein_coding MGP_C3HHeJ_T0070304.1 MGP_C3HHeJ_G0029084.1 mouse_genomes_project 5 28373135 28376099 - MGP_C3HHeJ_P0070304 Adgrf3 protein_coding protein_coding MGP_C3HHeJ_T0070305.1 MGP_C3HHeJ_G0029084.1 mouse_genomes_project 5 28381991 28385468 - Adgrf3 protein_coding processed_transcript MGP_C3HHeJ_T0001441.1 MGP_C3HHeJ_G0001371.1 mouse_genomes_project 5 22398121 22400223 - TEC TEC MGP_C3HHeJ_T0001442.1 MGP_C3HHeJ_G0001371.1 mouse_genomes_project 5 22399687 22400221 - TEC TEC MGP_C3HHeJ_T0074296.1 MGP_C3HHeJ_G0029827.1 mouse_genomes_project 5 133035161 133053486 - MGP_C3HHeJ_P0074296 Phkg1 protein_coding protein_coding MGP_C3HHeJ_T0074297.1 MGP_C3HHeJ_G0029827.1 mouse_genomes_project 5 133037699 133077132 - MGP_C3HHeJ_P0074297 Phkg1 protein_coding protein_coding MGP_C3HHeJ_T0074298.1 MGP_C3HHeJ_G0029827.1 mouse_genomes_project 5 133037704 133042462 - Phkg1 protein_coding retained_intron MGP_C3HHeJ_T0074299.1 MGP_C3HHeJ_G0029827.1 mouse_genomes_project 5 133042233 133044352 - Phkg1 protein_coding processed_transcript MGP_C3HHeJ_T0074300.1 MGP_C3HHeJ_G0029827.1 mouse_genomes_project 5 133051895 133053435 - Phkg1 protein_coding retained_intron MGP_C3HHeJ_T0097913.1 MGP_C3HHeJ_G0036125.1 mouse_genomes_project 5 139391300 139394237 + pseudogene pseudogene MGP_C3HHeJ_T0014941.1 MGP_C3HHeJ_G0013045.1 mouse_genomes_project 5 112452139 112453586 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075414.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 148998395 148999242 + Trrap protein_coding processed_transcript MGP_C3HHeJ_T0075415.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 148998642 149018395 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075416.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 148998732 149090175 + MGP_C3HHeJ_P0075416 Trrap protein_coding unknown_likely_coding MGP_C3HHeJ_T0075417.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 148999094 149007598 + MGP_C3HHeJ_P0075417 Trrap protein_coding protein_coding MGP_C3HHeJ_T0075418.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 148999344 149090168 + MGP_C3HHeJ_P0075418 Trrap protein_coding protein_coding MGP_C3HHeJ_T0075419.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149001639 149090141 + MGP_C3HHeJ_P0075419 Trrap protein_coding protein_coding MGP_C3HHeJ_T0075420.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149001639 149090166 + MGP_C3HHeJ_P0075420 Trrap protein_coding protein_coding MGP_C3HHeJ_T0075421.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149016020 149090166 + MGP_C3HHeJ_P0075421 Trrap protein_coding protein_coding MGP_C3HHeJ_T0075422.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149021908 149024101 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075423.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149035157 149064953 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075424.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149042458 149044210 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075425.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149050221 149053552 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075426.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149069423 149070883 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075427.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149086024 149090167 + Trrap protein_coding retained_intron MGP_C3HHeJ_T0075428.1 MGP_C3HHeJ_G0030049.1 mouse_genomes_project 5 149087679 149089733 + Trrap protein_coding processed_transcript MGP_C3HHeJ_T0001793.1 MGP_C3HHeJ_G0001716.1 mouse_genomes_project 5 128530946 128533815 + TEC TEC MGP_C3HHeJ_T0004721.1 MGP_C3HHeJ_G0004067.1 mouse_genomes_project 5 118494810 118500381 + C330018A13Rik antisense antisense MGP_C3HHeJ_T0004705.1 MGP_C3HHeJ_G0004057.1 mouse_genomes_project 5 114863069 114871517 + 1700095B10Rik antisense antisense MGP_C3HHeJ_T0004706.1 MGP_C3HHeJ_G0004057.1 mouse_genomes_project 5 114863077 114865469 + 1700095B10Rik antisense antisense MGP_C3HHeJ_T0004707.1 MGP_C3HHeJ_G0004057.1 mouse_genomes_project 5 114863086 114871465 + 1700095B10Rik antisense antisense MGP_C3HHeJ_T0004708.1 MGP_C3HHeJ_G0004057.1 mouse_genomes_project 5 114863109 114865720 + 1700095B10Rik antisense antisense MGP_C3HHeJ_T0008209.1 MGP_C3HHeJ_G0006673.1 mouse_genomes_project 5 114245975 114249215 + 1700028D13Rik lincRNA lincRNA MGP_C3HHeJ_T0008210.1 MGP_C3HHeJ_G0006673.1 mouse_genomes_project 5 114246018 114249217 + 1700028D13Rik lincRNA lincRNA MGP_C3HHeJ_T0008189.1 MGP_C3HHeJ_G0006663.1 mouse_genomes_project 5 112487451 112497909 + A630023P12Rik lincRNA lincRNA MGP_C3HHeJ_T0008190.1 MGP_C3HHeJ_G0006663.1 mouse_genomes_project 5 112487472 112488051 + A630023P12Rik lincRNA lincRNA MGP_C3HHeJ_T0008191.1 MGP_C3HHeJ_G0006663.1 mouse_genomes_project 5 112493475 112497063 + A630023P12Rik lincRNA lincRNA MGP_C3HHeJ_T0008192.1 MGP_C3HHeJ_G0006663.1 mouse_genomes_project 5 112493511 112494432 + A630023P12Rik lincRNA lincRNA MGP_C3HHeJ_T0008193.1 MGP_C3HHeJ_G0006663.1 mouse_genomes_project 5 112493542 112497917 + A630023P12Rik lincRNA lincRNA MGP_C3HHeJ_T0099436.1 MGP_C3HHeJ_G0037630.1 mouse_genomes_project 5 38970953 38971133 - Gm23022 snRNA snRNA MGP_C3HHeJ_T0070714.1 MGP_C3HHeJ_G0029149.1 mouse_genomes_project 5 32034219 32038835 - MGP_C3HHeJ_P0070714 Tmem129 protein_coding protein_coding MGP_C3HHeJ_T0070715.1 MGP_C3HHeJ_G0029149.1 mouse_genomes_project 5 32034226 32038907 - Tmem129 protein_coding retained_intron MGP_C3HHeJ_T0070716.1 MGP_C3HHeJ_G0029149.1 mouse_genomes_project 5 32036565 32038864 - Tmem129 protein_coding retained_intron MGP_C3HHeJ_T0001505.1 MGP_C3HHeJ_G0001432.1 mouse_genomes_project 5 43302451 43304522 - TEC TEC MGP_C3HHeJ_T0014902.1 MGP_C3HHeJ_G0013006.1 mouse_genomes_project 5 101875706 101876059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001587.1 MGP_C3HHeJ_G0001513.1 mouse_genomes_project 5 62045978 62049287 - TEC TEC MGP_C3HHeJ_T0017983.1 MGP_C3HHeJ_G0015378.1 mouse_genomes_project 5 153744993 153765178 - Gm15411 processed_transcript lincRNA MGP_C3HHeJ_T0017984.1 MGP_C3HHeJ_G0015378.1 mouse_genomes_project 5 153747704 153765149 - Gm15411 processed_transcript lincRNA MGP_C3HHeJ_T0017985.1 MGP_C3HHeJ_G0015378.1 mouse_genomes_project 5 153763161 153765178 - Gm15411 processed_transcript retained_intron MGP_C3HHeJ_T0073763.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269739 125279898 + MGP_C3HHeJ_P0073763 Vps29 protein_coding protein_coding MGP_C3HHeJ_T0073764.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269760 125279104 + MGP_C3HHeJ_P0073764 Vps29 protein_coding protein_coding MGP_C3HHeJ_T0073765.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269763 125278849 + Vps29 protein_coding processed_transcript MGP_C3HHeJ_T0073766.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269776 125279823 + MGP_C3HHeJ_P0073766 Vps29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073767.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269794 125278798 + MGP_C3HHeJ_P0073767 Vps29 protein_coding protein_coding MGP_C3HHeJ_T0073768.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269814 125278880 + MGP_C3HHeJ_P0073768 Vps29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073769.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125269828 125281411 + MGP_C3HHeJ_P0073769 Vps29 protein_coding protein_coding MGP_C3HHeJ_T0073770.1 MGP_C3HHeJ_G0029741.1 mouse_genomes_project 5 125274238 125277602 + Vps29 protein_coding retained_intron MGP_C3HHeJ_T0008052.1 MGP_C3HHeJ_G0006558.1 mouse_genomes_project 5 52028400 52042389 + Gm42746 lincRNA lincRNA MGP_C3HHeJ_T0073926.1 MGP_C3HHeJ_G0029764.1 mouse_genomes_project 5 126491911 126493857 - MGP_C3HHeJ_P0073926 Il31 protein_coding protein_coding MGP_C3HHeJ_T0073927.1 MGP_C3HHeJ_G0029764.1 mouse_genomes_project 5 126491912 126494351 - MGP_C3HHeJ_P0073927 Il31 protein_coding protein_coding MGP_C3HHeJ_T0073928.1 MGP_C3HHeJ_G0029764.1 mouse_genomes_project 5 126492157 126501236 - MGP_C3HHeJ_P0073928 Il31 protein_coding protein_coding MGP_C3HHeJ_T0073929.1 MGP_C3HHeJ_G0029764.1 mouse_genomes_project 5 126493919 126494280 - Il31 protein_coding processed_transcript MGP_C3HHeJ_T0097911.1 MGP_C3HHeJ_G0036123.1 mouse_genomes_project 5 124722899 124723315 - pseudogene pseudogene MGP_C3HHeJ_T0074000.1 MGP_C3HHeJ_G0029773.1 mouse_genomes_project 5 126877209 126879137 - MGP_C3HHeJ_P0074000 Hcar2 protein_coding protein_coding MGP_C3HHeJ_T0070691.1 MGP_C3HHeJ_G0029144.1 mouse_genomes_project 5 31739507 31776518 + Uvssa protein_coding retained_intron MGP_C3HHeJ_T0070692.1 MGP_C3HHeJ_G0029144.1 mouse_genomes_project 5 31739654 31785739 + MGP_C3HHeJ_P0070692 Uvssa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070693.1 MGP_C3HHeJ_G0029144.1 mouse_genomes_project 5 31739654 31785739 + MGP_C3HHeJ_P0070693 Uvssa protein_coding protein_coding MGP_C3HHeJ_T0070694.1 MGP_C3HHeJ_G0029144.1 mouse_genomes_project 5 31739730 31785739 + MGP_C3HHeJ_P0070694 Uvssa protein_coding protein_coding MGP_C3HHeJ_T0014933.1 MGP_C3HHeJ_G0013037.1 mouse_genomes_project 5 110856642 110857360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072472.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101714824 101774428 - MGP_C3HHeJ_P0072472 Lin54 protein_coding protein_coding MGP_C3HHeJ_T0072473.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101714834 101772573 - MGP_C3HHeJ_P0072473 Lin54 protein_coding protein_coding MGP_C3HHeJ_T0072474.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101714939 101772615 - MGP_C3HHeJ_P0072474 Lin54 protein_coding protein_coding MGP_C3HHeJ_T0072475.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101714939 101774464 - MGP_C3HHeJ_P0072475 Lin54 protein_coding protein_coding MGP_C3HHeJ_T0072476.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101714948 101772560 - MGP_C3HHeJ_P0072476 Lin54 protein_coding protein_coding MGP_C3HHeJ_T0072477.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101715106 101774477 - MGP_C3HHeJ_P0072477 Lin54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072478.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101716458 101772505 - MGP_C3HHeJ_P0072478 Lin54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072479.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101716458 101772505 - MGP_C3HHeJ_P0072479 Lin54 protein_coding protein_coding MGP_C3HHeJ_T0072480.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101732025 101758226 - MGP_C3HHeJ_P0072480 Lin54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072481.1 MGP_C3HHeJ_G0029485.1 mouse_genomes_project 5 101757143 101772560 - Lin54 protein_coding retained_intron MGP_C3HHeJ_T0014775.1 MGP_C3HHeJ_G0012879.1 mouse_genomes_project 5 39953592 39954401 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008011.1 MGP_C3HHeJ_G0006528.1 mouse_genomes_project 5 33833169 33842490 - E130018O15Rik lincRNA lincRNA MGP_C3HHeJ_T0008077.1 MGP_C3HHeJ_G0006578.1 mouse_genomes_project 5 72477539 72479693 + 4933408A14Rik lincRNA lincRNA MGP_C3HHeJ_T0014880.1 MGP_C3HHeJ_G0012984.1 mouse_genomes_project 5 90160183 90161009 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0014876.1 MGP_C3HHeJ_G0012980.1 mouse_genomes_project 5 89076453 89077002 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011517.1 MGP_C3HHeJ_G0009650.1 mouse_genomes_project 5 136068764 136069043 + Gm25722 misc_RNA misc_RNA MGP_C3HHeJ_T0010642.1 MGP_C3HHeJ_G0008775.1 mouse_genomes_project 5 140906415 140906480 - Mir7036 miRNA miRNA MGP_C3HHeJ_T0098139.1 MGP_C3HHeJ_G0036351.1 mouse_genomes_project 5 20191502 20191615 - n-R5s170 rRNA rRNA MGP_C3HHeJ_T0004662.1 MGP_C3HHeJ_G0004029.1 mouse_genomes_project 5 97574684 97576039 - Gm33050 antisense antisense MGP_C3HHeJ_T0001868.1 MGP_C3HHeJ_G0001790.1 mouse_genomes_project 5 153250216 153250862 - TEC TEC MGP_C3HHeJ_T0001813.1 MGP_C3HHeJ_G0001736.1 mouse_genomes_project 5 134303241 134304876 - TEC TEC MGP_C3HHeJ_T0073008.1 MGP_C3HHeJ_G0029596.1 mouse_genomes_project 5 113739247 113739898 + MGP_C3HHeJ_P0073008 Gm26897 protein_coding protein_coding MGP_C3HHeJ_T0070523.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454405 29455912 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0070524.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454420 29455912 + MGP_C3HHeJ_P0070524 Krtcap3 protein_coding protein_coding MGP_C3HHeJ_T0070525.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454430 29455606 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0070526.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454436 29455917 + MGP_C3HHeJ_P0070526 Krtcap3 protein_coding protein_coding MGP_C3HHeJ_T0070527.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454439 29455912 + MGP_C3HHeJ_P0070527 Krtcap3 protein_coding protein_coding MGP_C3HHeJ_T0070528.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454476 29455413 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0070529.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29454641 29455711 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0070530.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29455050 29455914 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0070531.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29455194 29455912 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0070532.1 MGP_C3HHeJ_G0029119.1 mouse_genomes_project 5 29455269 29455912 + Krtcap3 protein_coding retained_intron MGP_C3HHeJ_T0007991.1 MGP_C3HHeJ_G0006514.1 mouse_genomes_project 5 26116811 26166496 - Gm26608 lincRNA lincRNA MGP_C3HHeJ_T0007992.1 MGP_C3HHeJ_G0006514.1 mouse_genomes_project 5 26151205 26152713 - Gm26608 lincRNA lincRNA MGP_C3HHeJ_T0072460.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633253 101650517 - Sec31a protein_coding retained_intron MGP_C3HHeJ_T0072461.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633253 101688265 - MGP_C3HHeJ_P0072461 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072462.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633254 101645088 - MGP_C3HHeJ_P0072462 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072463.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633258 101688206 - MGP_C3HHeJ_P0072463 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072464.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633612 101667940 - MGP_C3HHeJ_P0072464 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072465.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633750 101635875 - Sec31a protein_coding retained_intron MGP_C3HHeJ_T0072466.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101633815 101654451 - MGP_C3HHeJ_P0072466 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072467.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101637358 101650603 - MGP_C3HHeJ_P0072467 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072468.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101654482 101664652 - MGP_C3HHeJ_P0072468 Sec31a protein_coding protein_coding MGP_C3HHeJ_T0072469.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101673471 101677600 - Sec31a protein_coding processed_transcript MGP_C3HHeJ_T0072470.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101679710 101681641 - Sec31a protein_coding retained_intron MGP_C3HHeJ_T0072471.1 MGP_C3HHeJ_G0029484.1 mouse_genomes_project 5 101687439 101688197 - Sec31a protein_coding retained_intron MGP_C3HHeJ_T0072545.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104250864 104552588 - MGP_C3HHeJ_P0072545 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072546.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104250866 104443338 - MGP_C3HHeJ_P0072546 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072547.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104250866 104552588 - MGP_C3HHeJ_P0072547 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072548.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104250866 104396438 - MGP_C3HHeJ_P0072548 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072549.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104256054 104543032 - MGP_C3HHeJ_P0072549 Mapk10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072550.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104263203 104552527 - MGP_C3HHeJ_P0072550 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072551.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104325376 104365387 - MGP_C3HHeJ_P0072551 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072552.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104325686 104552588 - MGP_C3HHeJ_P0072552 Mapk10 protein_coding protein_coding MGP_C3HHeJ_T0072553.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104498186 104552538 - Mapk10 protein_coding processed_transcript MGP_C3HHeJ_T0072554.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104542925 104546115 - Mapk10 protein_coding processed_transcript MGP_C3HHeJ_T0072555.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104542929 104552588 - Mapk10 protein_coding processed_transcript MGP_C3HHeJ_T0072556.1 MGP_C3HHeJ_G0029498.1 mouse_genomes_project 5 104546053 104552125 - Mapk10 protein_coding processed_transcript MGP_C3HHeJ_T0004669.1 MGP_C3HHeJ_G0004032.1 mouse_genomes_project 5 100835598 100836825 + 4930405H06Rik antisense antisense MGP_C3HHeJ_T0008073.1 MGP_C3HHeJ_G0006575.1 mouse_genomes_project 5 64196632 64199695 - Gm26761 lincRNA lincRNA MGP_C3HHeJ_T0099440.1 MGP_C3HHeJ_G0037634.1 mouse_genomes_project 5 65225748 65225822 + Gm24399 snRNA snRNA MGP_C3HHeJ_T0071176.1 MGP_C3HHeJ_G0029225.1 mouse_genomes_project 5 42417461 42425670 + MGP_C3HHeJ_P0071176 Bst1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071177.1 MGP_C3HHeJ_G0029225.1 mouse_genomes_project 5 42417467 42441220 + MGP_C3HHeJ_P0071177 Bst1 protein_coding protein_coding MGP_C3HHeJ_T0071178.1 MGP_C3HHeJ_G0029225.1 mouse_genomes_project 5 42420901 42440576 + Bst1 protein_coding retained_intron MGP_C3HHeJ_T0071179.1 MGP_C3HHeJ_G0029225.1 mouse_genomes_project 5 42434223 42439520 + Bst1 protein_coding retained_intron MGP_C3HHeJ_T0098294.1 MGP_C3HHeJ_G0036506.1 mouse_genomes_project 5 1985375 1985502 - Gm22897 scaRNA scaRNA MGP_C3HHeJ_T0010649.1 MGP_C3HHeJ_G0008782.1 mouse_genomes_project 5 143734717 143734782 - Mir7037 miRNA miRNA MGP_C3HHeJ_T0004775.1 MGP_C3HHeJ_G0004104.1 mouse_genomes_project 5 135169043 135172543 + 4930563F08Rik antisense antisense MGP_C3HHeJ_T0070216.1 MGP_C3HHeJ_G0029066.1 mouse_genomes_project 5 26166753 26175581 + MGP_C3HHeJ_P0070216 Insig1 protein_coding protein_coding MGP_C3HHeJ_T0070217.1 MGP_C3HHeJ_G0029066.1 mouse_genomes_project 5 26170056 26172442 + Insig1 protein_coding retained_intron MGP_C3HHeJ_T0075379.1 MGP_C3HHeJ_G0030038.1 mouse_genomes_project 5 148122503 148131593 + MGP_C3HHeJ_P0075379 Gm42421 protein_coding protein_coding MGP_C3HHeJ_T0075252.1 MGP_C3HHeJ_G0030012.1 mouse_genomes_project 5 146783206 146785999 + Wipi2 protein_coding retained_intron MGP_C3HHeJ_T0075253.1 MGP_C3HHeJ_G0030012.1 mouse_genomes_project 5 146785050 146830257 + MGP_C3HHeJ_P0075253 Wipi2 protein_coding protein_coding MGP_C3HHeJ_T0075254.1 MGP_C3HHeJ_G0030012.1 mouse_genomes_project 5 146785099 146822378 + Wipi2 protein_coding retained_intron MGP_C3HHeJ_T0075255.1 MGP_C3HHeJ_G0030012.1 mouse_genomes_project 5 146785101 146827156 + MGP_C3HHeJ_P0075255 Wipi2 protein_coding protein_coding MGP_C3HHeJ_T0075256.1 MGP_C3HHeJ_G0030012.1 mouse_genomes_project 5 146822182 146824313 + Wipi2 protein_coding retained_intron MGP_C3HHeJ_T0014992.1 MGP_C3HHeJ_G0013096.1 mouse_genomes_project 5 141602562 141603304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004776.1 MGP_C3HHeJ_G0004105.1 mouse_genomes_project 5 135244562 135254577 + Gm42439 antisense antisense MGP_C3HHeJ_T0072719.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109238785 109279593 - MGP_C3HHeJ_P0072719 Glmn protein_coding protein_coding MGP_C3HHeJ_T0072720.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109238787 109279407 - MGP_C3HHeJ_P0072720 Glmn protein_coding protein_coding MGP_C3HHeJ_T0072721.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109238840 109241516 - Glmn protein_coding retained_intron MGP_C3HHeJ_T0072722.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109238841 109279842 - MGP_C3HHeJ_P0072722 Glmn protein_coding protein_coding MGP_C3HHeJ_T0072723.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109238842 109279374 - MGP_C3HHeJ_P0072723 Glmn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072724.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109263439 109279396 - Glmn protein_coding processed_transcript MGP_C3HHeJ_T0072725.1 MGP_C3HHeJ_G0029540.1 mouse_genomes_project 5 109266480 109279376 - MGP_C3HHeJ_P0072725 Glmn protein_coding protein_coding MGP_C3HHeJ_T0007964.1 MGP_C3HHeJ_G0006498.1 mouse_genomes_project 5 14376554 14378299 + Gm28710 lincRNA lincRNA MGP_C3HHeJ_T0072910.1 MGP_C3HHeJ_G0029579.1 mouse_genomes_project 5 112213667 112224154 - MGP_C3HHeJ_P0072910 Pgam5 protein_coding protein_coding MGP_C3HHeJ_T0072911.1 MGP_C3HHeJ_G0029579.1 mouse_genomes_project 5 112213693 112224128 - MGP_C3HHeJ_P0072911 Pgam5 protein_coding protein_coding MGP_C3HHeJ_T0072912.1 MGP_C3HHeJ_G0029579.1 mouse_genomes_project 5 112219459 112220258 - Pgam5 protein_coding retained_intron MGP_C3HHeJ_T0072913.1 MGP_C3HHeJ_G0029579.1 mouse_genomes_project 5 112219804 112224095 - MGP_C3HHeJ_P0072913 Pgam5 protein_coding protein_coding MGP_C3HHeJ_T0099468.1 MGP_C3HHeJ_G0037662.1 mouse_genomes_project 5 105276428 105276535 + Gm24897 snRNA snRNA MGP_C3HHeJ_T0069946.1 MGP_C3HHeJ_G0029013.1 mouse_genomes_project 5 19130360 19190565 + MGP_C3HHeJ_P0069946 Fam185a protein_coding protein_coding MGP_C3HHeJ_T0069947.1 MGP_C3HHeJ_G0029013.1 mouse_genomes_project 5 19130403 19139593 + Fam185a protein_coding retained_intron MGP_C3HHeJ_T0069948.1 MGP_C3HHeJ_G0029013.1 mouse_genomes_project 5 19139727 19189245 + Fam185a protein_coding processed_transcript MGP_C3HHeJ_T0008335.1 MGP_C3HHeJ_G0006753.1 mouse_genomes_project 5 141142075 141149289 + Gm8066 lincRNA lincRNA MGP_C3HHeJ_T0014796.1 MGP_C3HHeJ_G0012900.1 mouse_genomes_project 5 53709255 53725029 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004763.1 MGP_C3HHeJ_G0004095.1 mouse_genomes_project 5 127721936 127725018 - 4930404A12Rik antisense antisense MGP_C3HHeJ_T0004764.1 MGP_C3HHeJ_G0004095.1 mouse_genomes_project 5 127721937 127725018 - 4930404A12Rik antisense antisense MGP_C3HHeJ_T0102039.1 MGP_C3HHeJ_G0040004.1 mouse_genomes_project 5 87691851 87701708 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0072853.1 MGP_C3HHeJ_G0029563.1 mouse_genomes_project 5 110536925 110557714 - MGP_C3HHeJ_P0072853 protein_coding protein_coding MGP_C3HHeJ_T0072854.1 MGP_C3HHeJ_G0029563.1 mouse_genomes_project 5 110537006 110557677 - MGP_C3HHeJ_P0072854 protein_coding protein_coding MGP_C3HHeJ_T0072855.1 MGP_C3HHeJ_G0029563.1 mouse_genomes_project 5 110537444 110586466 - MGP_C3HHeJ_P0072855 protein_coding protein_coding MGP_C3HHeJ_T0072856.1 MGP_C3HHeJ_G0029563.1 mouse_genomes_project 5 110539278 110554999 - MGP_C3HHeJ_P0072856 protein_coding protein_coding MGP_C3HHeJ_T0011515.1 MGP_C3HHeJ_G0009648.1 mouse_genomes_project 5 120701992 120702282 - Gm24050 misc_RNA misc_RNA MGP_C3HHeJ_T0015027.1 MGP_C3HHeJ_G0013131.1 mouse_genomes_project 5 152054245 152054705 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008239.1 MGP_C3HHeJ_G0006690.1 mouse_genomes_project 5 118688953 118692632 - Gm13838 lincRNA lincRNA MGP_C3HHeJ_T0072432.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101200367 101224598 - MGP_C3HHeJ_P0072432 Hnrnpd protein_coding protein_coding MGP_C3HHeJ_T0072433.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101205032 101224597 - MGP_C3HHeJ_P0072433 Hnrnpd protein_coding protein_coding MGP_C3HHeJ_T0072434.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101205432 101224577 - MGP_C3HHeJ_P0072434 Hnrnpd protein_coding protein_coding MGP_C3HHeJ_T0072435.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101205436 101224595 - MGP_C3HHeJ_P0072435 Hnrnpd protein_coding protein_coding MGP_C3HHeJ_T0072436.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101205437 101221083 - MGP_C3HHeJ_P0072436 Hnrnpd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072437.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101205585 101210609 - MGP_C3HHeJ_P0072437 Hnrnpd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072438.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101205602 101209185 - MGP_C3HHeJ_P0072438 Hnrnpd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072439.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101206717 101224284 - MGP_C3HHeJ_P0072439 Hnrnpd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072440.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101209177 101210822 - Hnrnpd protein_coding retained_intron MGP_C3HHeJ_T0072441.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101210461 101224594 - MGP_C3HHeJ_P0072441 Hnrnpd protein_coding protein_coding MGP_C3HHeJ_T0072442.1 MGP_C3HHeJ_G0029479.1 mouse_genomes_project 5 101211742 101224519 - MGP_C3HHeJ_P0072442 Hnrnpd protein_coding protein_coding MGP_C3HHeJ_T0001494.1 MGP_C3HHeJ_G0001421.1 mouse_genomes_project 5 42557913 42558460 + TEC TEC MGP_C3HHeJ_T0070673.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31604201 31631475 - MGP_C3HHeJ_P0070673 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070674.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31604232 31631473 - MGP_C3HHeJ_P0070674 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070675.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31604503 31631462 - MGP_C3HHeJ_P0070675 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070676.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31604646 31605729 - Ctbp1 protein_coding retained_intron MGP_C3HHeJ_T0070677.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31604739 31606032 - Ctbp1 protein_coding retained_intron MGP_C3HHeJ_T0070678.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31604978 31631420 - MGP_C3HHeJ_P0070678 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070679.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31606861 31625969 - MGP_C3HHeJ_P0070679 Ctbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070680.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31607336 31631460 - MGP_C3HHeJ_P0070680 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070681.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31615779 31626117 - MGP_C3HHeJ_P0070681 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070682.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31617121 31626005 - Ctbp1 protein_coding retained_intron MGP_C3HHeJ_T0070683.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31617538 31631060 - MGP_C3HHeJ_P0070683 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0070684.1 MGP_C3HHeJ_G0029142.1 mouse_genomes_project 5 31623430 31631071 - MGP_C3HHeJ_P0070684 Ctbp1 protein_coding protein_coding MGP_C3HHeJ_T0001772.1 MGP_C3HHeJ_G0001696.1 mouse_genomes_project 5 125298773 125299085 + TEC TEC MGP_C3HHeJ_T0001723.1 MGP_C3HHeJ_G0001647.1 mouse_genomes_project 5 113187405 113187945 + TEC TEC MGP_C3HHeJ_T0007974.1 MGP_C3HHeJ_G0006504.1 mouse_genomes_project 5 21240191 21241684 + 4930580E04Rik lincRNA lincRNA MGP_C3HHeJ_T0011495.1 MGP_C3HHeJ_G0009628.1 mouse_genomes_project 5 23168125 23168408 - Gm26356 misc_RNA misc_RNA MGP_C3HHeJ_T0072609.1 MGP_C3HHeJ_G0029514.1 mouse_genomes_project 5 105907084 105921345 + MGP_C3HHeJ_P0072609 BC005561 protein_coding protein_coding MGP_C3HHeJ_T0071697.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72324068 72365365 - MGP_C3HHeJ_P0071697 Nfxl1 protein_coding protein_coding MGP_C3HHeJ_T0071698.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72324071 72365326 - MGP_C3HHeJ_P0071698 Nfxl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071699.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72324282 72327352 - Nfxl1 protein_coding retained_intron MGP_C3HHeJ_T0071700.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72326907 72332271 - Nfxl1 protein_coding retained_intron MGP_C3HHeJ_T0071701.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72331811 72334729 - Nfxl1 protein_coding retained_intron MGP_C3HHeJ_T0071702.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72352205 72365280 - MGP_C3HHeJ_P0071702 Nfxl1 protein_coding protein_coding MGP_C3HHeJ_T0071703.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72355922 72365093 - Nfxl1 protein_coding retained_intron MGP_C3HHeJ_T0071704.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72355924 72365329 - Nfxl1 protein_coding retained_intron MGP_C3HHeJ_T0071705.1 MGP_C3HHeJ_G0029312.1 mouse_genomes_project 5 72361152 72365304 - Nfxl1 protein_coding retained_intron MGP_C3HHeJ_T0001452.1 MGP_C3HHeJ_G0001381.1 mouse_genomes_project 5 29033898 29035963 - TEC TEC MGP_C3HHeJ_T0069867.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425666 13894266 + MGP_C3HHeJ_P0069867 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069868.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425763 13890824 + MGP_C3HHeJ_P0069868 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069869.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425763 13890824 + MGP_C3HHeJ_P0069869 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069870.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425763 13894259 + MGP_C3HHeJ_P0069870 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069871.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425763 13890824 + MGP_C3HHeJ_P0069871 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069872.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425763 13890806 + MGP_C3HHeJ_P0069872 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069873.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425804 13890482 + MGP_C3HHeJ_P0069873 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069874.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13425886 13595235 + MGP_C3HHeJ_P0069874 Cacna2d1 protein_coding protein_coding MGP_C3HHeJ_T0069875.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13528582 13785852 + Cacna2d1 protein_coding retained_intron MGP_C3HHeJ_T0069876.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13843001 13846560 + Cacna2d1 protein_coding retained_intron MGP_C3HHeJ_T0069877.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13843161 13858447 + Cacna2d1 protein_coding retained_intron MGP_C3HHeJ_T0069878.1 MGP_C3HHeJ_G0028999.1 mouse_genomes_project 5 13880196 13881128 + Cacna2d1 protein_coding retained_intron MGP_C3HHeJ_T0004782.1 MGP_C3HHeJ_G0004110.1 mouse_genomes_project 5 138411141 138425046 - Wbscr25 antisense antisense MGP_C3HHeJ_T0004783.1 MGP_C3HHeJ_G0004110.1 mouse_genomes_project 5 138416192 138424203 - Wbscr25 antisense antisense MGP_C3HHeJ_T0072246.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92794729 92835244 - MGP_C3HHeJ_P0072246 Cdkl2 protein_coding protein_coding MGP_C3HHeJ_T0072247.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92794729 92835245 - MGP_C3HHeJ_P0072247 Cdkl2 protein_coding protein_coding MGP_C3HHeJ_T0072248.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92796459 92834899 - MGP_C3HHeJ_P0072248 Cdkl2 protein_coding protein_coding MGP_C3HHeJ_T0072249.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92796478 92834875 - MGP_C3HHeJ_P0072249 Cdkl2 protein_coding protein_coding MGP_C3HHeJ_T0072250.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92796691 92806002 - Cdkl2 protein_coding retained_intron MGP_C3HHeJ_T0072251.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92810415 92822158 - MGP_C3HHeJ_P0072251 Cdkl2 protein_coding protein_coding MGP_C3HHeJ_T0072252.1 MGP_C3HHeJ_G0029440.1 mouse_genomes_project 5 92834469 92836091 - Cdkl2 protein_coding TEC MGP_C3HHeJ_T0072402.1 MGP_C3HHeJ_G0029468.1 mouse_genomes_project 5 98542681 98552847 - MGP_C3HHeJ_P0072402 Naa11 protein_coding protein_coding MGP_C3HHeJ_T0014877.1 MGP_C3HHeJ_G0012981.1 mouse_genomes_project 5 89199885 89199997 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017926.1 MGP_C3HHeJ_G0015361.1 mouse_genomes_project 5 64209317 64321308 - Gm20033 processed_transcript antisense MGP_C3HHeJ_T0017927.1 MGP_C3HHeJ_G0015361.1 mouse_genomes_project 5 64209321 64210086 - Gm20033 processed_transcript retained_intron MGP_C3HHeJ_T0017928.1 MGP_C3HHeJ_G0015361.1 mouse_genomes_project 5 64209433 64218999 - Gm20033 processed_transcript retained_intron MGP_C3HHeJ_T0017929.1 MGP_C3HHeJ_G0015361.1 mouse_genomes_project 5 64210913 64227763 - Gm20033 processed_transcript processed_transcript MGP_C3HHeJ_T0017930.1 MGP_C3HHeJ_G0015361.1 mouse_genomes_project 5 64319566 64321026 - Gm20033 processed_transcript retained_intron MGP_C3HHeJ_T0017931.1 MGP_C3HHeJ_G0015361.1 mouse_genomes_project 5 64319662 64321307 - Gm20033 processed_transcript antisense MGP_C3HHeJ_T0014891.1 MGP_C3HHeJ_G0012995.1 mouse_genomes_project 5 94039303 94039685 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100695.1 MGP_C3HHeJ_G0038889.1 mouse_genomes_project 5 53975268 53975397 + Gm24235 snoRNA snoRNA MGP_C3HHeJ_T0001712.1 MGP_C3HHeJ_G0001636.1 mouse_genomes_project 5 108804468 108808588 - TEC TEC MGP_C3HHeJ_T0070576.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29770765 29773176 + Slc4a1ap protein_coding retained_intron MGP_C3HHeJ_T0070577.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29770765 29799852 + MGP_C3HHeJ_P0070577 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070578.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29770767 29778220 + Slc4a1ap protein_coding retained_intron MGP_C3HHeJ_T0070579.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29770767 29800158 + MGP_C3HHeJ_P0070579 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070580.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29770782 29780615 + MGP_C3HHeJ_P0070580 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070581.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29770782 29799857 + MGP_C3HHeJ_P0070581 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070582.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29771371 29775999 + Slc4a1ap protein_coding retained_intron MGP_C3HHeJ_T0070583.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29775743 29778761 + Slc4a1ap protein_coding retained_intron MGP_C3HHeJ_T0070584.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29779928 29799823 + MGP_C3HHeJ_P0070584 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070585.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29787387 29799853 + Slc4a1ap protein_coding retained_intron MGP_C3HHeJ_T0070586.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29787576 29799857 + MGP_C3HHeJ_P0070586 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070587.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29787654 29799782 + MGP_C3HHeJ_P0070587 Slc4a1ap protein_coding protein_coding MGP_C3HHeJ_T0070588.1 MGP_C3HHeJ_G0029127.1 mouse_genomes_project 5 29796395 29802630 + Slc4a1ap protein_coding processed_transcript MGP_C3HHeJ_T0008102.1 MGP_C3HHeJ_G0006598.1 mouse_genomes_project 5 77552423 77555787 + 1700017L05Rik lincRNA lincRNA MGP_C3HHeJ_T0008345.1 MGP_C3HHeJ_G0006762.1 mouse_genomes_project 5 147438733 147447708 + 4930448H16Rik lincRNA lincRNA MGP_C3HHeJ_T0099449.1 MGP_C3HHeJ_G0037643.1 mouse_genomes_project 5 75386228 75386333 - Gm22084 snRNA snRNA MGP_C3HHeJ_T0072931.1 MGP_C3HHeJ_G0029583.1 mouse_genomes_project 5 112300867 112313122 + Lrcol1 protein_coding retained_intron MGP_C3HHeJ_T0072932.1 MGP_C3HHeJ_G0029583.1 mouse_genomes_project 5 112300867 112313122 + MGP_C3HHeJ_P0072932 Lrcol1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072933.1 MGP_C3HHeJ_G0029583.1 mouse_genomes_project 5 112300867 112313122 + MGP_C3HHeJ_P0072933 Lrcol1 protein_coding protein_coding MGP_C3HHeJ_T0072934.1 MGP_C3HHeJ_G0029583.1 mouse_genomes_project 5 112311216 112313195 + MGP_C3HHeJ_P0072934 Lrcol1 protein_coding protein_coding MGP_C3HHeJ_T0072935.1 MGP_C3HHeJ_G0029583.1 mouse_genomes_project 5 112311278 112313132 + MGP_C3HHeJ_P0072935 Lrcol1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008135.1 MGP_C3HHeJ_G0006625.1 mouse_genomes_project 5 100236968 100364966 - Gm43251 lincRNA lincRNA MGP_C3HHeJ_T0001481.1 MGP_C3HHeJ_G0001408.1 mouse_genomes_project 5 36534470 36534765 - TEC TEC MGP_C3HHeJ_T0014842.1 MGP_C3HHeJ_G0012946.1 mouse_genomes_project 5 73415612 73416501 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001602.1 MGP_C3HHeJ_G0001527.1 mouse_genomes_project 5 65181107 65183930 + TEC TEC MGP_C3HHeJ_T0073833.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733129 125767788 - MGP_C3HHeJ_P0073833 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073834.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733391 125767736 - MGP_C3HHeJ_P0073834 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073835.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733391 125767736 - MGP_C3HHeJ_P0073835 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073836.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733391 125767729 - MGP_C3HHeJ_P0073836 Anapc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073837.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733393 125767729 - MGP_C3HHeJ_P0073837 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073838.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733397 125767729 - MGP_C3HHeJ_P0073838 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073839.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733401 125767743 - MGP_C3HHeJ_P0073839 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073840.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125733585 125739220 - MGP_C3HHeJ_P0073840 Anapc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073841.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125734085 125745729 - Anapc5 protein_coding retained_intron MGP_C3HHeJ_T0073842.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125737555 125740172 - MGP_C3HHeJ_P0073842 Anapc5 protein_coding protein_coding MGP_C3HHeJ_T0073843.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125739141 125748465 - Anapc5 protein_coding retained_intron MGP_C3HHeJ_T0073844.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125745393 125753342 - MGP_C3HHeJ_P0073844 Anapc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073845.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125745468 125765032 - Anapc5 protein_coding processed_transcript MGP_C3HHeJ_T0073846.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125746093 125752350 - Anapc5 protein_coding retained_intron MGP_C3HHeJ_T0073847.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125746277 125767728 - Anapc5 protein_coding retained_intron MGP_C3HHeJ_T0073848.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125751842 125767467 - Anapc5 protein_coding retained_intron MGP_C3HHeJ_T0073849.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125753327 125767719 - MGP_C3HHeJ_P0073849 Anapc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073850.1 MGP_C3HHeJ_G0029751.1 mouse_genomes_project 5 125764305 125767724 - Anapc5 protein_coding processed_transcript MGP_C3HHeJ_T0073922.1 MGP_C3HHeJ_G0029763.1 mouse_genomes_project 5 126399871 126458514 + MGP_C3HHeJ_P0073922 Mlxip protein_coding protein_coding MGP_C3HHeJ_T0073923.1 MGP_C3HHeJ_G0029763.1 mouse_genomes_project 5 126399873 126469548 + MGP_C3HHeJ_P0073923 Mlxip protein_coding protein_coding MGP_C3HHeJ_T0073924.1 MGP_C3HHeJ_G0029763.1 mouse_genomes_project 5 126457469 126469545 + MGP_C3HHeJ_P0073924 Mlxip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073925.1 MGP_C3HHeJ_G0029763.1 mouse_genomes_project 5 126463042 126465167 + Mlxip protein_coding processed_transcript MGP_C3HHeJ_T0010630.1 MGP_C3HHeJ_G0008763.1 mouse_genomes_project 5 127476107 127476186 - Gm27486 miRNA miRNA MGP_C3HHeJ_T0070017.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21362057 21482631 - MGP_C3HHeJ_P0070017 Srpk2 protein_coding protein_coding MGP_C3HHeJ_T0070018.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21364249 21545851 - MGP_C3HHeJ_P0070018 Srpk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070019.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21385288 21403528 - Srpk2 protein_coding processed_transcript MGP_C3HHeJ_T0070020.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21387504 21545417 - MGP_C3HHeJ_P0070020 Srpk2 protein_coding protein_coding MGP_C3HHeJ_T0070021.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21405560 21545370 - Srpk2 protein_coding retained_intron MGP_C3HHeJ_T0070022.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21407979 21410433 - Srpk2 protein_coding retained_intron MGP_C3HHeJ_T0070023.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21408377 21554787 - MGP_C3HHeJ_P0070023 Srpk2 protein_coding protein_coding MGP_C3HHeJ_T0070024.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21427234 21545758 - MGP_C3HHeJ_P0070024 Srpk2 protein_coding protein_coding MGP_C3HHeJ_T0070025.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21427339 21554770 - MGP_C3HHeJ_P0070025 Srpk2 protein_coding protein_coding MGP_C3HHeJ_T0070026.1 MGP_C3HHeJ_G0029027.1 mouse_genomes_project 5 21480826 21482652 - Srpk2 protein_coding retained_intron MGP_C3HHeJ_T0070136.1 MGP_C3HHeJ_G0029048.1 mouse_genomes_project 5 22545418 22553110 + MGP_C3HHeJ_P0070136 Chpf2 protein_coding protein_coding MGP_C3HHeJ_T0070137.1 MGP_C3HHeJ_G0029048.1 mouse_genomes_project 5 22545419 22547887 + Chpf2 protein_coding processed_transcript MGP_C3HHeJ_T0070138.1 MGP_C3HHeJ_G0029048.1 mouse_genomes_project 5 22545427 22551199 + MGP_C3HHeJ_P0070138 Chpf2 protein_coding protein_coding MGP_C3HHeJ_T0070139.1 MGP_C3HHeJ_G0029048.1 mouse_genomes_project 5 22545449 22546924 + Chpf2 protein_coding processed_transcript MGP_C3HHeJ_T0070140.1 MGP_C3HHeJ_G0029048.1 mouse_genomes_project 5 22545502 22549934 + MGP_C3HHeJ_P0070140 Chpf2 protein_coding protein_coding MGP_C3HHeJ_T0070144.1 MGP_C3HHeJ_G0029048.1 mouse_genomes_project 5 22552201 22553271 + Chpf2 protein_coding processed_transcript MGP_C3HHeJ_T0075121.1 MGP_C3HHeJ_G0029980.1 mouse_genomes_project 5 143319242 143321599 + Gpr146 protein_coding processed_transcript MGP_C3HHeJ_T0075122.1 MGP_C3HHeJ_G0029980.1 mouse_genomes_project 5 143319287 143321600 + Gpr146 protein_coding processed_transcript MGP_C3HHeJ_T0075123.1 MGP_C3HHeJ_G0029980.1 mouse_genomes_project 5 143319708 143335232 + MGP_C3HHeJ_P0075123 Gpr146 protein_coding protein_coding MGP_C3HHeJ_T0075124.1 MGP_C3HHeJ_G0029980.1 mouse_genomes_project 5 143319765 143320805 + MGP_C3HHeJ_P0075124 Gpr146 protein_coding protein_coding MGP_C3HHeJ_T0075125.1 MGP_C3HHeJ_G0029980.1 mouse_genomes_project 5 143322126 143338884 + MGP_C3HHeJ_P0075125 Gpr146 protein_coding protein_coding MGP_C3HHeJ_T0075126.1 MGP_C3HHeJ_G0029980.1 mouse_genomes_project 5 143332487 143338883 + MGP_C3HHeJ_P0075126 Gpr146 protein_coding protein_coding MGP_C3HHeJ_T0073639.1 MGP_C3HHeJ_G0029724.1 mouse_genomes_project 5 124306202 124341369 - MGP_C3HHeJ_P0073639 Gm42878 protein_coding protein_coding MGP_C3HHeJ_T0073640.1 MGP_C3HHeJ_G0029724.1 mouse_genomes_project 5 124306202 124341369 - MGP_C3HHeJ_P0073640 Gm42878 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075503.1 MGP_C3HHeJ_G0030065.1 mouse_genomes_project 5 149739040 149815321 - MGP_C3HHeJ_P0075503 protein_coding protein_coding MGP_C3HHeJ_T0001611.1 MGP_C3HHeJ_G0001536.1 mouse_genomes_project 5 65546217 65547118 + TEC TEC MGP_C3HHeJ_T0008074.1 MGP_C3HHeJ_G0006576.1 mouse_genomes_project 5 67006684 67012031 + Gm43698 lincRNA lincRNA MGP_C3HHeJ_T0008075.1 MGP_C3HHeJ_G0006576.1 mouse_genomes_project 5 67011758 67012852 + Gm43698 lincRNA lincRNA MGP_C3HHeJ_T0075271.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147082923 147087599 - MGP_C3HHeJ_P0075271 Actb protein_coding protein_coding MGP_C3HHeJ_T0075272.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147083993 147087547 - MGP_C3HHeJ_P0075272 Actb protein_coding protein_coding MGP_C3HHeJ_T0075273.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147084687 147086158 - MGP_C3HHeJ_P0075273 Actb protein_coding protein_coding MGP_C3HHeJ_T0075274.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147084731 147087570 - Actb protein_coding processed_transcript MGP_C3HHeJ_T0075275.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147085008 147087567 - MGP_C3HHeJ_P0075275 Actb protein_coding protein_coding MGP_C3HHeJ_T0075276.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147085041 147086274 - MGP_C3HHeJ_P0075276 Actb protein_coding protein_coding MGP_C3HHeJ_T0075277.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147085102 147087517 - Actb protein_coding retained_intron MGP_C3HHeJ_T0075278.1 MGP_C3HHeJ_G0030016.1 mouse_genomes_project 5 147085209 147087539 - Actb protein_coding retained_intron MGP_C3HHeJ_T0074066.1 MGP_C3HHeJ_G0029786.1 mouse_genomes_project 5 127382544 127397757 - MGP_C3HHeJ_P0074066 Gm12184 protein_coding protein_coding MGP_C3HHeJ_T0001643.1 MGP_C3HHeJ_G0001568.1 mouse_genomes_project 5 69033326 69037687 - TEC TEC MGP_C3HHeJ_T0014719.1 MGP_C3HHeJ_G0012823.1 mouse_genomes_project 5 20716819 20717430 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004804.1 MGP_C3HHeJ_G0004125.1 mouse_genomes_project 5 144203248 144206588 + Gm16120 antisense antisense MGP_C3HHeJ_T0004805.1 MGP_C3HHeJ_G0004125.1 mouse_genomes_project 5 144205378 144206588 + Gm16120 antisense antisense MGP_C3HHeJ_T0004556.1 MGP_C3HHeJ_G0003942.1 mouse_genomes_project 5 487519 488253 - Gm43825 antisense antisense MGP_C3HHeJ_T0075588.1 MGP_C3HHeJ_G0030087.1 mouse_genomes_project 5 152221202 152389205 - MGP_C3HHeJ_P0075588 Flt1 protein_coding protein_coding MGP_C3HHeJ_T0075589.1 MGP_C3HHeJ_G0030087.1 mouse_genomes_project 5 152266116 152296078 - Flt1 protein_coding processed_transcript MGP_C3HHeJ_T0075590.1 MGP_C3HHeJ_G0030087.1 mouse_genomes_project 5 152276142 152276652 - Flt1 protein_coding processed_transcript MGP_C3HHeJ_T0075591.1 MGP_C3HHeJ_G0030087.1 mouse_genomes_project 5 152296818 152389182 - MGP_C3HHeJ_P0075591 Flt1 protein_coding protein_coding MGP_C3HHeJ_T0075592.1 MGP_C3HHeJ_G0030087.1 mouse_genomes_project 5 152307229 152309253 - Flt1 protein_coding retained_intron MGP_C3HHeJ_T0075593.1 MGP_C3HHeJ_G0030087.1 mouse_genomes_project 5 152316735 152389182 - Flt1 protein_coding processed_transcript MGP_C3HHeJ_T0070913.1 MGP_C3HHeJ_G0029175.1 mouse_genomes_project 5 33529438 33543748 - MGP_C3HHeJ_P0070913 Lrpap1 protein_coding protein_coding MGP_C3HHeJ_T0070914.1 MGP_C3HHeJ_G0029175.1 mouse_genomes_project 5 33531006 33540496 - MGP_C3HHeJ_P0070914 Lrpap1 protein_coding protein_coding MGP_C3HHeJ_T0070915.1 MGP_C3HHeJ_G0029175.1 mouse_genomes_project 5 33531232 33543671 - Lrpap1 protein_coding retained_intron MGP_C3HHeJ_T0070916.1 MGP_C3HHeJ_G0029175.1 mouse_genomes_project 5 33540109 33543678 - Lrpap1 protein_coding retained_intron MGP_C3HHeJ_T0070917.1 MGP_C3HHeJ_G0029175.1 mouse_genomes_project 5 33540490 33542522 - Lrpap1 protein_coding processed_transcript MGP_C3HHeJ_T0070422.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29244265 29268256 + MGP_C3HHeJ_P0070422 Cad protein_coding protein_coding MGP_C3HHeJ_T0070423.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29244296 29257537 + MGP_C3HHeJ_P0070423 Cad protein_coding protein_coding MGP_C3HHeJ_T0070424.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29244413 29268009 + MGP_C3HHeJ_P0070424 Cad protein_coding protein_coding MGP_C3HHeJ_T0070425.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29244413 29268009 + MGP_C3HHeJ_P0070425 Cad protein_coding protein_coding MGP_C3HHeJ_T0070426.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29244440 29267972 + MGP_C3HHeJ_P0070426 Cad protein_coding protein_coding MGP_C3HHeJ_T0070427.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29248163 29249454 + Cad protein_coding retained_intron MGP_C3HHeJ_T0070428.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29251283 29256742 + Cad protein_coding retained_intron MGP_C3HHeJ_T0070429.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29256068 29256954 + Cad protein_coding processed_transcript MGP_C3HHeJ_T0070430.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29260129 29261968 + Cad protein_coding processed_transcript MGP_C3HHeJ_T0070431.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29260242 29262479 + Cad protein_coding retained_intron MGP_C3HHeJ_T0070432.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29260328 29262756 + Cad protein_coding retained_intron MGP_C3HHeJ_T0070433.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29262082 29263355 + Cad protein_coding retained_intron MGP_C3HHeJ_T0070434.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29263891 29265803 + MGP_C3HHeJ_P0070434 Cad protein_coding protein_coding MGP_C3HHeJ_T0070435.1 MGP_C3HHeJ_G0029105.1 mouse_genomes_project 5 29265587 29266440 + Cad protein_coding retained_intron MGP_C3HHeJ_T0014826.1 MGP_C3HHeJ_G0012930.1 mouse_genomes_project 5 63813041 63813540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001719.1 MGP_C3HHeJ_G0001643.1 mouse_genomes_project 5 110391115 110393205 - TEC TEC MGP_C3HHeJ_T0075409.1 MGP_C3HHeJ_G0030046.1 mouse_genomes_project 5 148477907 148578324 - MGP_C3HHeJ_P0075409 Baiap2l1 protein_coding protein_coding MGP_C3HHeJ_T0075410.1 MGP_C3HHeJ_G0030046.1 mouse_genomes_project 5 148497569 148504481 - Baiap2l1 protein_coding processed_transcript MGP_C3HHeJ_T0074903.1 MGP_C3HHeJ_G0029934.1 mouse_genomes_project 5 141297521 141342580 - MGP_C3HHeJ_P0074903 Agfg2 protein_coding protein_coding MGP_C3HHeJ_T0074904.1 MGP_C3HHeJ_G0029934.1 mouse_genomes_project 5 141298575 141342534 - MGP_C3HHeJ_P0074904 Agfg2 protein_coding protein_coding MGP_C3HHeJ_T0074905.1 MGP_C3HHeJ_G0029934.1 mouse_genomes_project 5 141298873 141311235 - Agfg2 protein_coding retained_intron MGP_C3HHeJ_T0074906.1 MGP_C3HHeJ_G0029934.1 mouse_genomes_project 5 141301889 141342580 - MGP_C3HHeJ_P0074906 Agfg2 protein_coding protein_coding MGP_C3HHeJ_T0074907.1 MGP_C3HHeJ_G0029934.1 mouse_genomes_project 5 141303660 141313789 - MGP_C3HHeJ_P0074907 Agfg2 protein_coding protein_coding MGP_C3HHeJ_T0074908.1 MGP_C3HHeJ_G0029934.1 mouse_genomes_project 5 141312282 141342547 - Agfg2 protein_coding retained_intron MGP_C3HHeJ_T0073169.1 MGP_C3HHeJ_G0029629.1 mouse_genomes_project 5 116335446 116454319 + MGP_C3HHeJ_P0073169 Acacb protein_coding protein_coding MGP_C3HHeJ_T0073170.1 MGP_C3HHeJ_G0029629.1 mouse_genomes_project 5 116356493 116454313 + MGP_C3HHeJ_P0073170 Acacb protein_coding protein_coding MGP_C3HHeJ_T0073171.1 MGP_C3HHeJ_G0029629.1 mouse_genomes_project 5 116371244 116390114 + MGP_C3HHeJ_P0073171 Acacb protein_coding protein_coding MGP_C3HHeJ_T0073172.1 MGP_C3HHeJ_G0029629.1 mouse_genomes_project 5 116399461 116454317 + Acacb protein_coding retained_intron MGP_C3HHeJ_T0073173.1 MGP_C3HHeJ_G0029629.1 mouse_genomes_project 5 116451893 116452519 + Acacb protein_coding retained_intron MGP_C3HHeJ_T0008167.1 MGP_C3HHeJ_G0006646.1 mouse_genomes_project 5 107716746 107725186 + Gm32736 lincRNA lincRNA MGP_C3HHeJ_T0008369.1 MGP_C3HHeJ_G0006783.1 mouse_genomes_project 5 153708197 153711338 + Gm15409 lincRNA lincRNA MGP_C3HHeJ_T0074630.1 MGP_C3HHeJ_G0029885.1 mouse_genomes_project 5 139297454 139339181 + Srrm3 protein_coding retained_intron MGP_C3HHeJ_T0074631.1 MGP_C3HHeJ_G0029885.1 mouse_genomes_project 5 139297461 139350855 + MGP_C3HHeJ_P0074631 Srrm3 protein_coding protein_coding MGP_C3HHeJ_T0074632.1 MGP_C3HHeJ_G0029885.1 mouse_genomes_project 5 139308604 139372669 + MGP_C3HHeJ_P0074632 Srrm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074633.1 MGP_C3HHeJ_G0029885.1 mouse_genomes_project 5 139308604 139374332 + MGP_C3HHeJ_P0074633 Srrm3 protein_coding protein_coding MGP_C3HHeJ_T0074634.1 MGP_C3HHeJ_G0029885.1 mouse_genomes_project 5 139353043 139356393 + Srrm3 protein_coding retained_intron MGP_C3HHeJ_T0074635.1 MGP_C3HHeJ_G0029885.1 mouse_genomes_project 5 139366186 139367778 + Srrm3 protein_coding retained_intron MGP_C3HHeJ_T0070219.1 MGP_C3HHeJ_G0029068.1 mouse_genomes_project 5 26299799 26345144 - MGP_C3HHeJ_P0070219 protein_coding protein_coding MGP_C3HHeJ_T0070220.1 MGP_C3HHeJ_G0029068.1 mouse_genomes_project 5 26301429 26308956 - MGP_C3HHeJ_P0070220 protein_coding protein_coding MGP_C3HHeJ_T0070221.1 MGP_C3HHeJ_G0029068.1 mouse_genomes_project 5 26304440 26337227 - MGP_C3HHeJ_P0070221 protein_coding protein_coding MGP_C3HHeJ_T0070222.1 MGP_C3HHeJ_G0029068.1 mouse_genomes_project 5 26304748 26309102 - MGP_C3HHeJ_P0070222 protein_coding protein_coding MGP_C3HHeJ_T0070223.1 MGP_C3HHeJ_G0029068.1 mouse_genomes_project 5 26308178 26309297 - MGP_C3HHeJ_P0070223 protein_coding protein_coding MGP_C3HHeJ_T0070668.1 MGP_C3HHeJ_G0029141.1 mouse_genomes_project 5 31551907 31569635 - Spon2 protein_coding retained_intron MGP_C3HHeJ_T0070669.1 MGP_C3HHeJ_G0029141.1 mouse_genomes_project 5 31567612 31572141 - MGP_C3HHeJ_P0070669 Spon2 protein_coding protein_coding MGP_C3HHeJ_T0070670.1 MGP_C3HHeJ_G0029141.1 mouse_genomes_project 5 31567619 31571871 - Spon2 protein_coding retained_intron MGP_C3HHeJ_T0070671.1 MGP_C3HHeJ_G0029141.1 mouse_genomes_project 5 31567620 31569646 - Spon2 protein_coding retained_intron MGP_C3HHeJ_T0070672.1 MGP_C3HHeJ_G0029141.1 mouse_genomes_project 5 31570114 31571881 - MGP_C3HHeJ_P0070672 Spon2 protein_coding protein_coding MGP_C3HHeJ_T0004625.1 MGP_C3HHeJ_G0003997.1 mouse_genomes_project 5 52633233 52634202 - Gm42747 antisense antisense MGP_C3HHeJ_T0004676.1 MGP_C3HHeJ_G0004036.1 mouse_genomes_project 5 101325220 101344055 + Tmem150cos antisense antisense MGP_C3HHeJ_T0004677.1 MGP_C3HHeJ_G0004036.1 mouse_genomes_project 5 101339108 101344179 + Tmem150cos antisense antisense MGP_C3HHeJ_T0014813.1 MGP_C3HHeJ_G0012917.1 mouse_genomes_project 5 59355814 59356248 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0073823.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125678371 125699010 - MGP_C3HHeJ_P0073823 Camkk2 protein_coding protein_coding MGP_C3HHeJ_T0073824.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125678995 125689260 - MGP_C3HHeJ_P0073824 Camkk2 protein_coding protein_coding MGP_C3HHeJ_T0073825.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125679242 125724536 - MGP_C3HHeJ_P0073825 Camkk2 protein_coding protein_coding MGP_C3HHeJ_T0073826.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125685786 125724611 - Camkk2 protein_coding retained_intron MGP_C3HHeJ_T0073827.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125691610 125709088 - MGP_C3HHeJ_P0073827 Camkk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073828.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125693198 125724547 - Camkk2 protein_coding processed_transcript MGP_C3HHeJ_T0073829.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125698975 125724493 - MGP_C3HHeJ_P0073829 Camkk2 protein_coding protein_coding MGP_C3HHeJ_T0073830.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125701498 125724537 - MGP_C3HHeJ_P0073830 Camkk2 protein_coding protein_coding MGP_C3HHeJ_T0073831.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125702765 125724621 - Camkk2 protein_coding retained_intron MGP_C3HHeJ_T0073832.1 MGP_C3HHeJ_G0029750.1 mouse_genomes_project 5 125709228 125724527 - MGP_C3HHeJ_P0073832 Camkk2 protein_coding protein_coding MGP_C3HHeJ_T0070771.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32395900 32403015 - Poln protein_coding processed_transcript MGP_C3HHeJ_T0070772.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32395910 32441922 - Poln protein_coding processed_transcript MGP_C3HHeJ_T0070773.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32395919 32571880 - MGP_C3HHeJ_P0070773 Poln protein_coding protein_coding MGP_C3HHeJ_T0070774.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32395919 32571880 - MGP_C3HHeJ_P0070774 Poln protein_coding protein_coding MGP_C3HHeJ_T0070775.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32396004 32571858 - MGP_C3HHeJ_P0070775 Poln protein_coding protein_coding MGP_C3HHeJ_T0070776.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32396150 32552256 - MGP_C3HHeJ_P0070776 Poln protein_coding unknown_likely_coding MGP_C3HHeJ_T0070777.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32396150 32552256 - MGP_C3HHeJ_P0070777 Poln protein_coding unknown_likely_coding MGP_C3HHeJ_T0070778.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32403805 32503944 - Poln protein_coding processed_transcript MGP_C3HHeJ_T0070779.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32421916 32503888 - Poln protein_coding processed_transcript MGP_C3HHeJ_T0070780.1 MGP_C3HHeJ_G0029157.1 mouse_genomes_project 5 32499880 32503960 - Poln protein_coding retained_intron MGP_C3HHeJ_T0072633.1 MGP_C3HHeJ_G0029523.1 mouse_genomes_project 5 106997648 107064088 + MGP_C3HHeJ_P0072633 Lrrc8b protein_coding protein_coding MGP_C3HHeJ_T0010608.1 MGP_C3HHeJ_G0008741.1 mouse_genomes_project 5 88155930 88156022 - Mir3969 miRNA miRNA MGP_C3HHeJ_T0069677.1 MGP_C3HHeJ_G0028969.1 mouse_genomes_project 5 1006207 1031578 - MGP_C3HHeJ_P0069677 Cyp51 protein_coding protein_coding MGP_C3HHeJ_T0069678.1 MGP_C3HHeJ_G0028969.1 mouse_genomes_project 5 1008330 1031175 - Cyp51 protein_coding processed_transcript MGP_C3HHeJ_T0069679.1 MGP_C3HHeJ_G0028969.1 mouse_genomes_project 5 1026107 1030213 - Cyp51 protein_coding retained_intron MGP_C3HHeJ_T0069680.1 MGP_C3HHeJ_G0028969.1 mouse_genomes_project 5 1027880 1031253 - Cyp51 protein_coding retained_intron MGP_C3HHeJ_T0074953.1 MGP_C3HHeJ_G0029946.1 mouse_genomes_project 5 141742283 141748441 + MGP_C3HHeJ_P0074953 protein_coding protein_coding MGP_C3HHeJ_T0004745.1 MGP_C3HHeJ_G0004083.1 mouse_genomes_project 5 124695227 124695861 + 1700008B11Rik antisense antisense MGP_C3HHeJ_T0010595.1 MGP_C3HHeJ_G0008728.1 mouse_genomes_project 5 51148735 51148851 - Mir6417 miRNA miRNA MGP_C3HHeJ_T0008188.1 MGP_C3HHeJ_G0006662.1 mouse_genomes_project 5 112343679 112345923 + Gm26711 lincRNA lincRNA MGP_C3HHeJ_T0072320.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93365742 93402561 + MGP_C3HHeJ_P0072320 Fam47e protein_coding protein_coding MGP_C3HHeJ_T0072321.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93365744 93402415 + MGP_C3HHeJ_P0072321 Fam47e protein_coding unknown_likely_coding MGP_C3HHeJ_T0072322.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93365775 93402461 + MGP_C3HHeJ_P0072322 Fam47e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072323.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93382174 93402683 + MGP_C3HHeJ_P0072323 Fam47e protein_coding protein_coding MGP_C3HHeJ_T0072324.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93382233 93403079 + MGP_C3HHeJ_P0072324 Fam47e protein_coding protein_coding MGP_C3HHeJ_T0072325.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93382234 93403080 + MGP_C3HHeJ_P0072325 Fam47e protein_coding protein_coding MGP_C3HHeJ_T0072326.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93382240 93397183 + MGP_C3HHeJ_P0072326 Fam47e protein_coding protein_coding MGP_C3HHeJ_T0072327.1 MGP_C3HHeJ_G0029452.1 mouse_genomes_project 5 93382253 93402532 + MGP_C3HHeJ_P0072327 Fam47e protein_coding protein_coding MGP_C3HHeJ_T0014869.1 MGP_C3HHeJ_G0012973.1 mouse_genomes_project 5 88165296 88165705 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001856.1 MGP_C3HHeJ_G0001778.1 mouse_genomes_project 5 145396326 145397287 - TEC TEC MGP_C3HHeJ_T0098154.1 MGP_C3HHeJ_G0036366.1 mouse_genomes_project 5 137768192 137768306 + n-R5s178 rRNA rRNA MGP_C3HHeJ_T0001844.1 MGP_C3HHeJ_G0001766.1 mouse_genomes_project 5 138432286 138435302 - TEC TEC MGP_C3HHeJ_T0072444.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101279045 101281537 - Hnrnpdl protein_coding processed_transcript MGP_C3HHeJ_T0072445.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101279045 101284714 - MGP_C3HHeJ_P0072445 Hnrnpdl protein_coding protein_coding MGP_C3HHeJ_T0072446.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101280189 101284361 - MGP_C3HHeJ_P0072446 Hnrnpdl protein_coding protein_coding MGP_C3HHeJ_T0072447.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101280195 101285156 - MGP_C3HHeJ_P0072447 Hnrnpdl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072448.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101280296 101282194 - Hnrnpdl protein_coding retained_intron MGP_C3HHeJ_T0072449.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101280894 101284387 - MGP_C3HHeJ_P0072449 Hnrnpdl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072450.1 MGP_C3HHeJ_G0029481.1 mouse_genomes_project 5 101281428 101282592 - Hnrnpdl protein_coding retained_intron MGP_C3HHeJ_T0073078.1 MGP_C3HHeJ_G0029611.1 mouse_genomes_project 5 115170552 115252427 - MGP_C3HHeJ_P0073078 2900026A02Rik protein_coding protein_coding MGP_C3HHeJ_T0073079.1 MGP_C3HHeJ_G0029611.1 mouse_genomes_project 5 115173294 115225358 - MGP_C3HHeJ_P0073079 2900026A02Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0014666.1 MGP_C3HHeJ_G0012770.1 mouse_genomes_project 5 1752786 1753618 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007996.1 MGP_C3HHeJ_G0006518.1 mouse_genomes_project 5 28146990 28158681 - Gm42806 lincRNA lincRNA MGP_C3HHeJ_T0007997.1 MGP_C3HHeJ_G0006518.1 mouse_genomes_project 5 28154409 28157650 - Gm42806 lincRNA lincRNA MGP_C3HHeJ_T0072032.1 MGP_C3HHeJ_G0029370.1 mouse_genomes_project 5 87014547 87046094 - MGP_C3HHeJ_P0072032 Tmprss11g protein_coding protein_coding MGP_C3HHeJ_T0072033.1 MGP_C3HHeJ_G0029370.1 mouse_genomes_project 5 87015038 87046065 - MGP_C3HHeJ_P0072033 Tmprss11g protein_coding protein_coding MGP_C3HHeJ_T0072034.1 MGP_C3HHeJ_G0029370.1 mouse_genomes_project 5 87017026 87019312 - Tmprss11g protein_coding retained_intron MGP_C3HHeJ_T0014729.1 MGP_C3HHeJ_G0012833.1 mouse_genomes_project 5 22183035 22184425 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102065.1 MGP_C3HHeJ_G0040030.1 mouse_genomes_project 5 156411531 156452104 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0070027.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21631530 21676897 - MGP_C3HHeJ_P0070027 Pus7 protein_coding protein_coding MGP_C3HHeJ_T0070028.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21631531 21676739 - MGP_C3HHeJ_P0070028 Pus7 protein_coding protein_coding MGP_C3HHeJ_T0070029.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21631538 21672796 - MGP_C3HHeJ_P0070029 Pus7 protein_coding protein_coding MGP_C3HHeJ_T0070030.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21633247 21640995 - Pus7 protein_coding processed_transcript MGP_C3HHeJ_T0070031.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21634304 21655180 - MGP_C3HHeJ_P0070031 Pus7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070032.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21640260 21655217 - Pus7 protein_coding processed_transcript MGP_C3HHeJ_T0070033.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21641413 21646281 - Pus7 protein_coding processed_transcript MGP_C3HHeJ_T0070034.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21651970 21671616 - MGP_C3HHeJ_P0070034 Pus7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070035.1 MGP_C3HHeJ_G0029028.1 mouse_genomes_project 5 21665788 21668906 - Pus7 protein_coding retained_intron MGP_C3HHeJ_T0075299.1 MGP_C3HHeJ_G0030020.1 mouse_genomes_project 5 147374533 147407485 + MGP_C3HHeJ_P0075299 Spdye4b protein_coding protein_coding MGP_C3HHeJ_T0075300.1 MGP_C3HHeJ_G0030020.1 mouse_genomes_project 5 147375000 147406826 + MGP_C3HHeJ_P0075300 Spdye4b protein_coding protein_coding MGP_C3HHeJ_T0075301.1 MGP_C3HHeJ_G0030020.1 mouse_genomes_project 5 147392290 147406965 + Spdye4b protein_coding processed_transcript MGP_C3HHeJ_T0075302.1 MGP_C3HHeJ_G0030020.1 mouse_genomes_project 5 147392295 147406623 + Spdye4b protein_coding processed_transcript MGP_C3HHeJ_T0004697.1 MGP_C3HHeJ_G0004049.1 mouse_genomes_project 5 112103632 112104264 - Gm43136 antisense antisense MGP_C3HHeJ_T0001861.1 MGP_C3HHeJ_G0001783.1 mouse_genomes_project 5 147617083 147619399 - TEC TEC MGP_C3HHeJ_T0074570.1 MGP_C3HHeJ_G0029872.1 mouse_genomes_project 5 138686813 138689106 - MGP_C3HHeJ_P0074570 Fzd9 protein_coding protein_coding MGP_C3HHeJ_T0004557.1 MGP_C3HHeJ_G0003943.1 mouse_genomes_project 5 493714 495660 - 4833413G10Rik antisense antisense MGP_C3HHeJ_T0074241.1 MGP_C3HHeJ_G0029818.1 mouse_genomes_project 5 132283805 132397283 + MGP_C3HHeJ_P0074241 Adgrd1 protein_coding protein_coding MGP_C3HHeJ_T0074242.1 MGP_C3HHeJ_G0029818.1 mouse_genomes_project 5 132283812 132288710 + Adgrd1 protein_coding retained_intron MGP_C3HHeJ_T0074243.1 MGP_C3HHeJ_G0029818.1 mouse_genomes_project 5 132283812 132396364 + MGP_C3HHeJ_P0074243 Adgrd1 protein_coding protein_coding MGP_C3HHeJ_T0074244.1 MGP_C3HHeJ_G0029818.1 mouse_genomes_project 5 132284216 132395243 + MGP_C3HHeJ_P0074244 Adgrd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010586.1 MGP_C3HHeJ_G0008719.1 mouse_genomes_project 5 29916086 29916196 - Mir3473e miRNA miRNA MGP_C3HHeJ_T0069718.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2629969 2718905 - MGP_C3HHeJ_P0069718 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069719.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2629973 2718874 - MGP_C3HHeJ_P0069719 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069720.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2631673 2675450 - Cfap69 protein_coding processed_transcript MGP_C3HHeJ_T0069721.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2631729 2633193 - MGP_C3HHeJ_P0069721 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069722.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2631819 2637901 - MGP_C3HHeJ_P0069722 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069723.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2631862 2666363 - MGP_C3HHeJ_P0069723 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069724.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2637045 2718709 - MGP_C3HHeJ_P0069724 Cfap69 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069725.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2639864 2718874 - MGP_C3HHeJ_P0069725 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069726.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2644335 2718898 - MGP_C3HHeJ_P0069726 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0069727.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2678987 2679361 - Cfap69 protein_coding retained_intron MGP_C3HHeJ_T0069728.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2701258 2718893 - Cfap69 protein_coding retained_intron MGP_C3HHeJ_T0069729.1 MGP_C3HHeJ_G0028975.1 mouse_genomes_project 5 2704236 2717954 - MGP_C3HHeJ_P0069729 Cfap69 protein_coding protein_coding MGP_C3HHeJ_T0071690.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72105170 72315254 - MGP_C3HHeJ_P0071690 Corin protein_coding protein_coding MGP_C3HHeJ_T0071691.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72105171 72314989 - MGP_C3HHeJ_P0071691 Corin protein_coding protein_coding MGP_C3HHeJ_T0071692.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72106631 72315214 - MGP_C3HHeJ_P0071692 Corin protein_coding protein_coding MGP_C3HHeJ_T0071693.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72106631 72315220 - MGP_C3HHeJ_P0071693 Corin protein_coding protein_coding MGP_C3HHeJ_T0071694.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72106643 72315220 - MGP_C3HHeJ_P0071694 Corin protein_coding protein_coding MGP_C3HHeJ_T0071695.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72155655 72162775 - Corin protein_coding retained_intron MGP_C3HHeJ_T0071696.1 MGP_C3HHeJ_G0029311.1 mouse_genomes_project 5 72160459 72183695 - Corin protein_coding processed_transcript MGP_C3HHeJ_T0004768.1 MGP_C3HHeJ_G0004099.1 mouse_genomes_project 5 130369764 130388117 - Tmem132cos antisense antisense MGP_C3HHeJ_T0004769.1 MGP_C3HHeJ_G0004099.1 mouse_genomes_project 5 130369780 130388077 - Tmem132cos antisense antisense MGP_C3HHeJ_T0004770.1 MGP_C3HHeJ_G0004099.1 mouse_genomes_project 5 130369842 130388080 - Tmem132cos antisense antisense MGP_C3HHeJ_T0001465.1 MGP_C3HHeJ_G0001392.1 mouse_genomes_project 5 30873336 30878235 - TEC TEC MGP_C3HHeJ_T0073306.1 MGP_C3HHeJ_G0029656.1 mouse_genomes_project 5 117541392 117546541 + MGP_C3HHeJ_P0073306 Pop5 protein_coding protein_coding MGP_C3HHeJ_T0073307.1 MGP_C3HHeJ_G0029656.1 mouse_genomes_project 5 117543528 117545792 + Pop5 protein_coding processed_transcript MGP_C3HHeJ_T0073308.1 MGP_C3HHeJ_G0029656.1 mouse_genomes_project 5 117543581 117550928 + MGP_C3HHeJ_P0073308 Pop5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073309.1 MGP_C3HHeJ_G0029656.1 mouse_genomes_project 5 117543584 117546494 + Pop5 protein_coding processed_transcript MGP_C3HHeJ_T0073310.1 MGP_C3HHeJ_G0029656.1 mouse_genomes_project 5 117543596 117546217 + Pop5 protein_coding retained_intron MGP_C3HHeJ_T0073311.1 MGP_C3HHeJ_G0029656.1 mouse_genomes_project 5 117545890 117546516 + Pop5 protein_coding processed_transcript MGP_C3HHeJ_T0071307.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51164185 51204325 - MGP_C3HHeJ_P0071307 Dhx15 protein_coding protein_coding MGP_C3HHeJ_T0071308.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51164675 51204188 - MGP_C3HHeJ_P0071308 Dhx15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071309.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51167306 51171773 - Dhx15 protein_coding retained_intron MGP_C3HHeJ_T0071310.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51167708 51204300 - MGP_C3HHeJ_P0071310 Dhx15 protein_coding protein_coding MGP_C3HHeJ_T0071311.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51172634 51175603 - Dhx15 protein_coding retained_intron MGP_C3HHeJ_T0071312.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51180728 51204305 - MGP_C3HHeJ_P0071312 Dhx15 protein_coding protein_coding MGP_C3HHeJ_T0071313.1 MGP_C3HHeJ_G0029243.1 mouse_genomes_project 5 51198625 51201225 - Dhx15 protein_coding retained_intron MGP_C3HHeJ_T0010605.1 MGP_C3HHeJ_G0008738.1 mouse_genomes_project 5 77353309 77353391 + Mir5098 miRNA miRNA MGP_C3HHeJ_T0001722.1 MGP_C3HHeJ_G0001646.1 mouse_genomes_project 5 113148732 113151109 + TEC TEC MGP_C3HHeJ_T0075744.1 MGP_C3HHeJ_G0030110.1 mouse_genomes_project 5 155838283 155884885 + MGP_C3HHeJ_P0075744 Kl protein_coding protein_coding MGP_C3HHeJ_T0075745.1 MGP_C3HHeJ_G0030110.1 mouse_genomes_project 5 155838380 155876523 + Kl protein_coding retained_intron MGP_C3HHeJ_T0008169.1 MGP_C3HHeJ_G0006648.1 mouse_genomes_project 5 107993818 108007499 + Gm42914 lincRNA lincRNA MGP_C3HHeJ_T0004787.1 MGP_C3HHeJ_G0004113.1 mouse_genomes_project 5 139340252 139342132 - Srrm3os antisense antisense MGP_C3HHeJ_T0075005.1 MGP_C3HHeJ_G0029958.1 mouse_genomes_project 5 142080226 142084135 + MGP_C3HHeJ_P0075005 Lamtor4 protein_coding protein_coding MGP_C3HHeJ_T0075006.1 MGP_C3HHeJ_G0029958.1 mouse_genomes_project 5 142080575 142084138 + Lamtor4 protein_coding processed_transcript MGP_C3HHeJ_T0014716.1 MGP_C3HHeJ_G0012820.1 mouse_genomes_project 5 20504660 20506296 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001715.1 MGP_C3HHeJ_G0001639.1 mouse_genomes_project 5 109498528 109499874 - TEC TEC MGP_C3HHeJ_T0098498.1 MGP_C3HHeJ_G0036703.1 mouse_genomes_project 5 102105644 102106068 - Gm43514 sense_intronic sense_intronic MGP_C3HHeJ_T0014764.1 MGP_C3HHeJ_G0012868.1 mouse_genomes_project 5 32493978 32494309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017941.1 MGP_C3HHeJ_G0015365.1 mouse_genomes_project 5 74058253 74059513 + Dancr processed_transcript lincRNA MGP_C3HHeJ_T0017942.1 MGP_C3HHeJ_G0015365.1 mouse_genomes_project 5 74058259 74059512 + Dancr processed_transcript retained_intron MGP_C3HHeJ_T0071678.1 MGP_C3HHeJ_G0029308.1 mouse_genomes_project 5 71344453 71443890 - MGP_C3HHeJ_P0071678 Gabra4 protein_coding protein_coding MGP_C3HHeJ_T0071679.1 MGP_C3HHeJ_G0029308.1 mouse_genomes_project 5 71345905 71443563 - MGP_C3HHeJ_P0071679 Gabra4 protein_coding protein_coding MGP_C3HHeJ_T0071680.1 MGP_C3HHeJ_G0029308.1 mouse_genomes_project 5 71346310 71443472 - MGP_C3HHeJ_P0071680 Gabra4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071681.1 MGP_C3HHeJ_G0029308.1 mouse_genomes_project 5 71346759 71443457 - MGP_C3HHeJ_P0071681 Gabra4 protein_coding protein_coding MGP_C3HHeJ_T0071682.1 MGP_C3HHeJ_G0029308.1 mouse_genomes_project 5 71438319 71443402 - Gabra4 protein_coding retained_intron MGP_C3HHeJ_T0102058.1 MGP_C3HHeJ_G0040023.1 mouse_genomes_project 5 147328842 147329781 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001445.1 MGP_C3HHeJ_G0001374.1 mouse_genomes_project 5 25266720 25269634 + TEC TEC MGP_C3HHeJ_T0008353.1 MGP_C3HHeJ_G0006768.1 mouse_genomes_project 5 150665809 150719094 - lincRNA lincRNA MGP_C3HHeJ_T0071107.1 MGP_C3HHeJ_G0029211.1 mouse_genomes_project 5 36824421 36827572 + MGP_C3HHeJ_P0071107 Drd5 protein_coding protein_coding MGP_C3HHeJ_T0004641.1 MGP_C3HHeJ_G0004011.1 mouse_genomes_project 5 72121480 72170479 + Gm20647 antisense antisense MGP_C3HHeJ_T0072952.1 MGP_C3HHeJ_G0029587.1 mouse_genomes_project 5 112626553 112633599 + MGP_C3HHeJ_P0072952 Ddx51 protein_coding protein_coding MGP_C3HHeJ_T0072953.1 MGP_C3HHeJ_G0029587.1 mouse_genomes_project 5 112626648 112628248 + Ddx51 protein_coding retained_intron MGP_C3HHeJ_T0072954.1 MGP_C3HHeJ_G0029587.1 mouse_genomes_project 5 112628239 112629008 + Ddx51 protein_coding retained_intron MGP_C3HHeJ_T0072955.1 MGP_C3HHeJ_G0029587.1 mouse_genomes_project 5 112629737 112630213 + Ddx51 protein_coding retained_intron MGP_C3HHeJ_T0072956.1 MGP_C3HHeJ_G0029587.1 mouse_genomes_project 5 112629964 112630974 + MGP_C3HHeJ_P0072956 Ddx51 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001446.1 MGP_C3HHeJ_G0001375.1 mouse_genomes_project 5 25293183 25295779 + TEC TEC MGP_C3HHeJ_T0074008.1 MGP_C3HHeJ_G0029777.1 mouse_genomes_project 5 126949524 126988839 + MGP_C3HHeJ_P0074008 Ccdc62 protein_coding protein_coding MGP_C3HHeJ_T0074009.1 MGP_C3HHeJ_G0029777.1 mouse_genomes_project 5 126949534 126955488 + Ccdc62 protein_coding retained_intron MGP_C3HHeJ_T0074010.1 MGP_C3HHeJ_G0029777.1 mouse_genomes_project 5 126949534 126988839 + MGP_C3HHeJ_P0074010 Ccdc62 protein_coding protein_coding MGP_C3HHeJ_T0074011.1 MGP_C3HHeJ_G0029777.1 mouse_genomes_project 5 126963781 126971914 + Ccdc62 protein_coding processed_transcript MGP_C3HHeJ_T0074012.1 MGP_C3HHeJ_G0029777.1 mouse_genomes_project 5 126971891 126974996 + Ccdc62 protein_coding retained_intron MGP_C3HHeJ_T0074013.1 MGP_C3HHeJ_G0029777.1 mouse_genomes_project 5 126981082 126986100 + Ccdc62 protein_coding retained_intron MGP_C3HHeJ_T0001855.1 MGP_C3HHeJ_G0001777.1 mouse_genomes_project 5 144321065 144323275 - TEC TEC MGP_C3HHeJ_T0069919.1 MGP_C3HHeJ_G0029008.1 mouse_genomes_project 5 18546088 18624306 - MGP_C3HHeJ_P0069919 Rsbn1l protein_coding protein_coding MGP_C3HHeJ_T0069920.1 MGP_C3HHeJ_G0029008.1 mouse_genomes_project 5 18548651 18628884 - MGP_C3HHeJ_P0069920 Rsbn1l protein_coding protein_coding MGP_C3HHeJ_T0069921.1 MGP_C3HHeJ_G0029008.1 mouse_genomes_project 5 18575330 18577619 - Rsbn1l protein_coding retained_intron MGP_C3HHeJ_T0069922.1 MGP_C3HHeJ_G0029008.1 mouse_genomes_project 5 18575361 18612993 - MGP_C3HHeJ_P0069922 Rsbn1l protein_coding protein_coding MGP_C3HHeJ_T0072427.1 MGP_C3HHeJ_G0029478.1 mouse_genomes_project 5 100493409 100943684 - MGP_C3HHeJ_P0072427 protein_coding protein_coding MGP_C3HHeJ_T0072428.1 MGP_C3HHeJ_G0029478.1 mouse_genomes_project 5 100568308 100943701 - MGP_C3HHeJ_P0072428 protein_coding protein_coding MGP_C3HHeJ_T0072429.1 MGP_C3HHeJ_G0029478.1 mouse_genomes_project 5 100762719 100943704 - protein_coding retained_intron MGP_C3HHeJ_T0072430.1 MGP_C3HHeJ_G0029478.1 mouse_genomes_project 5 100892490 100943460 - protein_coding processed_transcript MGP_C3HHeJ_T0072431.1 MGP_C3HHeJ_G0029478.1 mouse_genomes_project 5 100938105 100943695 - MGP_C3HHeJ_P0072431 protein_coding protein_coding MGP_C3HHeJ_T0007958.1 MGP_C3HHeJ_G0006494.1 mouse_genomes_project 5 7441188 7543169 + Gm42831 lincRNA lincRNA MGP_C3HHeJ_T0007959.1 MGP_C3HHeJ_G0006494.1 mouse_genomes_project 5 7441238 7534436 + Gm42831 lincRNA lincRNA MGP_C3HHeJ_T0073473.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120241335 120329895 + MGP_C3HHeJ_P0073473 Nos1 protein_coding protein_coding MGP_C3HHeJ_T0073474.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120241358 120329525 + Nos1 protein_coding processed_transcript MGP_C3HHeJ_T0073475.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120302734 120428074 + MGP_C3HHeJ_P0073475 Nos1 protein_coding protein_coding MGP_C3HHeJ_T0073476.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120303070 120423666 + MGP_C3HHeJ_P0073476 Nos1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073477.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120329552 120423212 + MGP_C3HHeJ_P0073477 Nos1 protein_coding protein_coding MGP_C3HHeJ_T0073478.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120329557 120423116 + MGP_C3HHeJ_P0073478 Nos1 protein_coding protein_coding MGP_C3HHeJ_T0073479.1 MGP_C3HHeJ_G0029685.1 mouse_genomes_project 5 120385988 120392524 + Nos1 protein_coding processed_transcript MGP_C3HHeJ_T0014936.1 MGP_C3HHeJ_G0013040.1 mouse_genomes_project 5 111376927 111378942 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0069615.1 MGP_C3HHeJ_G0028960.1 mouse_genomes_project 5 448044 460649 - MGP_C3HHeJ_P0069615 Rbm48 protein_coding protein_coding MGP_C3HHeJ_T0069616.1 MGP_C3HHeJ_G0028960.1 mouse_genomes_project 5 448842 460123 - MGP_C3HHeJ_P0069616 Rbm48 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0069617.1 MGP_C3HHeJ_G0028960.1 mouse_genomes_project 5 454837 456201 - Rbm48 protein_coding retained_intron MGP_C3HHeJ_T0069618.1 MGP_C3HHeJ_G0028960.1 mouse_genomes_project 5 455541 460146 - Rbm48 protein_coding retained_intron MGP_C3HHeJ_T0069619.1 MGP_C3HHeJ_G0028960.1 mouse_genomes_project 5 456315 460266 - MGP_C3HHeJ_P0069619 Rbm48 protein_coding protein_coding MGP_C3HHeJ_T0008336.1 MGP_C3HHeJ_G0006754.1 mouse_genomes_project 5 141343007 141348895 - Gm15498 lincRNA lincRNA MGP_C3HHeJ_T0072244.1 MGP_C3HHeJ_G0029439.1 mouse_genomes_project 5 92774654 92777504 + Gm1045 protein_coding retained_intron MGP_C3HHeJ_T0072245.1 MGP_C3HHeJ_G0029439.1 mouse_genomes_project 5 92774654 92782487 + MGP_C3HHeJ_P0072245 Gm1045 protein_coding protein_coding MGP_C3HHeJ_T0072887.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085569 112086273 + MGP_C3HHeJ_P0072887 Chfr protein_coding protein_coding MGP_C3HHeJ_T0072888.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085576 112115447 + MGP_C3HHeJ_P0072888 Chfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072889.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085576 112124828 + MGP_C3HHeJ_P0072889 Chfr protein_coding protein_coding MGP_C3HHeJ_T0072890.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085578 112124377 + MGP_C3HHeJ_P0072890 Chfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072891.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085584 112124516 + MGP_C3HHeJ_P0072891 Chfr protein_coding protein_coding MGP_C3HHeJ_T0072892.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085587 112121258 + Chfr protein_coding retained_intron MGP_C3HHeJ_T0072893.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085587 112124829 + MGP_C3HHeJ_P0072893 Chfr protein_coding protein_coding MGP_C3HHeJ_T0072894.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085605 112124826 + MGP_C3HHeJ_P0072894 Chfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072895.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085634 112096897 + MGP_C3HHeJ_P0072895 Chfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0072896.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112085652 112094278 + MGP_C3HHeJ_P0072896 Chfr protein_coding protein_coding MGP_C3HHeJ_T0072897.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112104975 112114594 + Chfr protein_coding retained_intron MGP_C3HHeJ_T0072898.1 MGP_C3HHeJ_G0029576.1 mouse_genomes_project 5 112115445 112123862 + Chfr protein_coding retained_intron MGP_C3HHeJ_T0001661.1 MGP_C3HHeJ_G0001585.1 mouse_genomes_project 5 74352154 74354905 - TEC TEC MGP_C3HHeJ_T0072053.1 MGP_C3HHeJ_G0029377.1 mouse_genomes_project 5 87528881 87540800 + MGP_C3HHeJ_P0072053 Ugt2b35 protein_coding protein_coding MGP_C3HHeJ_T0007975.1 MGP_C3HHeJ_G0006505.1 mouse_genomes_project 5 21254150 21288532 - lincRNA lincRNA MGP_C3HHeJ_T0007976.1 MGP_C3HHeJ_G0006505.1 mouse_genomes_project 5 21277595 21288505 - lincRNA lincRNA MGP_C3HHeJ_T0007977.1 MGP_C3HHeJ_G0006505.1 mouse_genomes_project 5 21287005 21289115 - lincRNA lincRNA MGP_C3HHeJ_T0007978.1 MGP_C3HHeJ_G0006505.1 mouse_genomes_project 5 21287482 21289465 - lincRNA lincRNA MGP_C3HHeJ_T0075044.1 MGP_C3HHeJ_G0029967.1 mouse_genomes_project 5 142511744 142527604 - MGP_C3HHeJ_P0075044 Zfp68 protein_coding protein_coding MGP_C3HHeJ_T0075045.1 MGP_C3HHeJ_G0029967.1 mouse_genomes_project 5 142513092 142527601 - MGP_C3HHeJ_P0075045 Zfp68 protein_coding protein_coding MGP_C3HHeJ_T0075046.1 MGP_C3HHeJ_G0029967.1 mouse_genomes_project 5 142514226 142515168 - Zfp68 protein_coding processed_transcript MGP_C3HHeJ_T0075047.1 MGP_C3HHeJ_G0029967.1 mouse_genomes_project 5 142514230 142527583 - MGP_C3HHeJ_P0075047 Zfp68 protein_coding protein_coding MGP_C3HHeJ_T0075048.1 MGP_C3HHeJ_G0029967.1 mouse_genomes_project 5 142519903 142527496 - MGP_C3HHeJ_P0075048 Zfp68 protein_coding protein_coding MGP_C3HHeJ_T0075049.1 MGP_C3HHeJ_G0029967.1 mouse_genomes_project 5 142524021 142527581 - Zfp68 protein_coding retained_intron MGP_C3HHeJ_T0070199.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 24874447 24910686 + Dpp6 protein_coding processed_transcript MGP_C3HHeJ_T0070200.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 24874601 25816695 + MGP_C3HHeJ_P0070200 Dpp6 protein_coding protein_coding MGP_C3HHeJ_T0070201.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 24874678 25519381 + Dpp6 protein_coding retained_intron MGP_C3HHeJ_T0070202.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 24965877 25817746 + MGP_C3HHeJ_P0070202 Dpp6 protein_coding protein_coding MGP_C3HHeJ_T0070203.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 25109201 25817742 + MGP_C3HHeJ_P0070203 Dpp6 protein_coding protein_coding MGP_C3HHeJ_T0070204.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 25109395 25112133 + Dpp6 protein_coding retained_intron MGP_C3HHeJ_T0070205.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 25330838 25817741 + MGP_C3HHeJ_P0070205 Dpp6 protein_coding protein_coding MGP_C3HHeJ_T0070206.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 25330838 25458229 + MGP_C3HHeJ_P0070206 Dpp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0070207.1 MGP_C3HHeJ_G0029063.1 mouse_genomes_project 5 25612796 25787303 + Dpp6 protein_coding retained_intron MGP_C3HHeJ_T0072925.1 MGP_C3HHeJ_G0029582.1 mouse_genomes_project 5 112295949 112299093 - MGP_C3HHeJ_P0072925 P2rx2 protein_coding protein_coding MGP_C3HHeJ_T0072926.1 MGP_C3HHeJ_G0029582.1 mouse_genomes_project 5 112295949 112299350 - MGP_C3HHeJ_P0072926 P2rx2 protein_coding protein_coding MGP_C3HHeJ_T0072927.1 MGP_C3HHeJ_G0029582.1 mouse_genomes_project 5 112295949 112299093 - MGP_C3HHeJ_P0072927 P2rx2 protein_coding protein_coding MGP_C3HHeJ_T0072928.1 MGP_C3HHeJ_G0029582.1 mouse_genomes_project 5 112295950 112299114 - MGP_C3HHeJ_P0072928 P2rx2 protein_coding protein_coding MGP_C3HHeJ_T0072929.1 MGP_C3HHeJ_G0029582.1 mouse_genomes_project 5 112296107 112299287 - P2rx2 protein_coding retained_intron MGP_C3HHeJ_T0072930.1 MGP_C3HHeJ_G0029582.1 mouse_genomes_project 5 112296107 112299287 - MGP_C3HHeJ_P0072930 P2rx2 protein_coding protein_coding MGP_C3HHeJ_T0102060.1 MGP_C3HHeJ_G0040025.1 mouse_genomes_project 5 150180629 150200714 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015007.1 MGP_C3HHeJ_G0013111.1 mouse_genomes_project 5 147348714 147349096 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099494.1 MGP_C3HHeJ_G0037688.1 mouse_genomes_project 5 145672783 145672890 - Gm24131 snRNA snRNA MGP_C3HHeJ_T0001558.1 MGP_C3HHeJ_G0001484.1 mouse_genomes_project 5 51089944 51092389 - TEC TEC MGP_C3HHeJ_T0001516.1 MGP_C3HHeJ_G0001443.1 mouse_genomes_project 5 45201624 45202825 + TEC TEC MGP_C3HHeJ_T0073471.1 MGP_C3HHeJ_G0029684.1 mouse_genomes_project 5 119853286 120007354 + Ksr2 protein_coding retained_intron MGP_C3HHeJ_T0073472.1 MGP_C3HHeJ_G0029684.1 mouse_genomes_project 5 119854115 120224851 + MGP_C3HHeJ_P0073472 Ksr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0014913.1 MGP_C3HHeJ_G0013017.1 mouse_genomes_project 5 106472546 106472828 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011493.1 MGP_C3HHeJ_G0009626.1 mouse_genomes_project 5 21345653 21345983 - Gm25219 misc_RNA misc_RNA MGP_C3HHeJ_T0004634.1 MGP_C3HHeJ_G0004005.1 mouse_genomes_project 5 66910808 66912103 - Gm42670 antisense antisense MGP_C3HHeJ_T0073663.1 MGP_C3HHeJ_G0029728.1 mouse_genomes_project 5 124430297 124503381 - MGP_C3HHeJ_P0073663 Acad10 protein_coding protein_coding MGP_C3HHeJ_T0073664.1 MGP_C3HHeJ_G0029728.1 mouse_genomes_project 5 124430299 124503416 - MGP_C3HHeJ_P0073664 Acad10 protein_coding protein_coding MGP_C3HHeJ_T0073665.1 MGP_C3HHeJ_G0029728.1 mouse_genomes_project 5 124430300 124476193 - Acad10 protein_coding retained_intron MGP_C3HHeJ_T0073666.1 MGP_C3HHeJ_G0029728.1 mouse_genomes_project 5 124481744 124488017 - Acad10 protein_coding processed_transcript MGP_C3HHeJ_T0073888.1 MGP_C3HHeJ_G0029757.1 mouse_genomes_project 5 126070539 126099406 - MGP_C3HHeJ_P0073888 Rhof protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073889.1 MGP_C3HHeJ_G0029757.1 mouse_genomes_project 5 126070539 126099341 - MGP_C3HHeJ_P0073889 Rhof protein_coding protein_coding MGP_C3HHeJ_T0073890.1 MGP_C3HHeJ_G0029757.1 mouse_genomes_project 5 126078672 126099374 - Rhof protein_coding processed_transcript MGP_C3HHeJ_T0073891.1 MGP_C3HHeJ_G0029757.1 mouse_genomes_project 5 126085296 126099637 - MGP_C3HHeJ_P0073891 Rhof protein_coding protein_coding MGP_C3HHeJ_T0071180.1 MGP_C3HHeJ_G0029226.1 mouse_genomes_project 5 42468047 42512948 + MGP_C3HHeJ_P0071180 Cd38 protein_coding protein_coding MGP_C3HHeJ_T0071181.1 MGP_C3HHeJ_G0029226.1 mouse_genomes_project 5 42468354 42469235 + Cd38 protein_coding retained_intron MGP_C3HHeJ_T0072957.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112637458 112748935 - MGP_C3HHeJ_P0072957 Ep400 protein_coding protein_coding MGP_C3HHeJ_T0072958.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112637458 112749125 - MGP_C3HHeJ_P0072958 Ep400 protein_coding protein_coding MGP_C3HHeJ_T0072959.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112637463 112749125 - MGP_C3HHeJ_P0072959 Ep400 protein_coding protein_coding MGP_C3HHeJ_T0072960.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112640455 112641274 - Ep400 protein_coding processed_transcript MGP_C3HHeJ_T0072961.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112640619 112641893 - Ep400 protein_coding retained_intron MGP_C3HHeJ_T0072962.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112661713 112666012 - Ep400 protein_coding retained_intron MGP_C3HHeJ_T0072963.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112669805 112672977 - Ep400 protein_coding retained_intron MGP_C3HHeJ_T0072964.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112671184 112681787 - MGP_C3HHeJ_P0072964 Ep400 protein_coding protein_coding MGP_C3HHeJ_T0072965.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112714630 112748993 - MGP_C3HHeJ_P0072965 Ep400 protein_coding protein_coding MGP_C3HHeJ_T0072966.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112715028 112748563 - MGP_C3HHeJ_P0072966 Ep400 protein_coding protein_coding MGP_C3HHeJ_T0072967.1 MGP_C3HHeJ_G0029588.1 mouse_genomes_project 5 112734329 112749125 - Ep400 protein_coding processed_transcript MGP_C3HHeJ_T0001437.1 MGP_C3HHeJ_G0001367.1 mouse_genomes_project 5 20646913 20651647 - TEC TEC MGP_C3HHeJ_T0010647.1 MGP_C3HHeJ_G0008780.1 mouse_genomes_project 5 142514809 142514892 + Gm24082 miRNA miRNA MGP_C3HHeJ_T0004644.1 MGP_C3HHeJ_G0004014.1 mouse_genomes_project 5 74697256 74725346 + Gm15984 antisense antisense MGP_C3HHeJ_T0004645.1 MGP_C3HHeJ_G0004014.1 mouse_genomes_project 5 74697678 74707759 + Gm15984 antisense antisense MGP_C3HHeJ_T0004790.1 MGP_C3HHeJ_G0004116.1 mouse_genomes_project 5 139816199 139961567 + Gm16599 antisense antisense MGP_C3HHeJ_T0098150.1 MGP_C3HHeJ_G0036362.1 mouse_genomes_project 5 119626639 119626760 + n-R5s174 rRNA rRNA MGP_C3HHeJ_T0014908.1 MGP_C3HHeJ_G0013012.1 mouse_genomes_project 5 104289859 104290114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075546.1 MGP_C3HHeJ_G0030078.1 mouse_genomes_project 5 151554934 151567813 - MGP_C3HHeJ_P0075546 Mtif3 protein_coding protein_coding MGP_C3HHeJ_T0075547.1 MGP_C3HHeJ_G0030078.1 mouse_genomes_project 5 151557882 151567815 - MGP_C3HHeJ_P0075547 Mtif3 protein_coding protein_coding MGP_C3HHeJ_T0075548.1 MGP_C3HHeJ_G0030078.1 mouse_genomes_project 5 151558729 151567825 - MGP_C3HHeJ_P0075548 Mtif3 protein_coding protein_coding MGP_C3HHeJ_T0075549.1 MGP_C3HHeJ_G0030078.1 mouse_genomes_project 5 151558729 151567777 - MGP_C3HHeJ_P0075549 Mtif3 protein_coding protein_coding MGP_C3HHeJ_T0075550.1 MGP_C3HHeJ_G0030078.1 mouse_genomes_project 5 151562957 151567771 - MGP_C3HHeJ_P0075550 Mtif3 protein_coding protein_coding MGP_C3HHeJ_T0075551.1 MGP_C3HHeJ_G0030078.1 mouse_genomes_project 5 151562968 151567828 - MGP_C3HHeJ_P0075551 Mtif3 protein_coding protein_coding MGP_C3HHeJ_T0014673.1 MGP_C3HHeJ_G0012777.1 mouse_genomes_project 5 4988114 4988854 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007960.1 MGP_C3HHeJ_G0006495.1 mouse_genomes_project 5 11165457 11234062 - Gm43716 lincRNA lincRNA MGP_C3HHeJ_T0011519.1 MGP_C3HHeJ_G0009652.1 mouse_genomes_project 5 143242896 143243173 + Gm27316 misc_RNA misc_RNA MGP_C3HHeJ_T0074189.1 MGP_C3HHeJ_G0029807.1 mouse_genomes_project 5 128535294 128581659 + MGP_C3HHeJ_P0074189 Aacs protein_coding protein_coding MGP_C3HHeJ_T0074190.1 MGP_C3HHeJ_G0029807.1 mouse_genomes_project 5 128569665 128576986 + Aacs protein_coding retained_intron MGP_C3HHeJ_T0074191.1 MGP_C3HHeJ_G0029807.1 mouse_genomes_project 5 128573737 128576145 + Aacs protein_coding retained_intron MGP_C3HHeJ_T0074192.1 MGP_C3HHeJ_G0029807.1 mouse_genomes_project 5 128576947 128577450 + Aacs protein_coding processed_transcript MGP_C3HHeJ_T0074193.1 MGP_C3HHeJ_G0029807.1 mouse_genomes_project 5 128578445 128579243 + Aacs protein_coding processed_transcript MGP_C3HHeJ_T0074194.1 MGP_C3HHeJ_G0029807.1 mouse_genomes_project 5 128579491 128580604 + Aacs protein_coding processed_transcript MGP_C3HHeJ_T0001456.1 MGP_C3HHeJ_G0001384.1 mouse_genomes_project 5 29407045 29411022 - TEC TEC MGP_C3HHeJ_T0074302.1 MGP_C3HHeJ_G0029829.1 mouse_genomes_project 5 133089304 133092046 + MGP_C3HHeJ_P0074302 Nupr1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074303.1 MGP_C3HHeJ_G0029829.1 mouse_genomes_project 5 133089306 133094554 + MGP_C3HHeJ_P0074303 Nupr1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074304.1 MGP_C3HHeJ_G0029829.1 mouse_genomes_project 5 133089332 133091159 + MGP_C3HHeJ_P0074304 Nupr1l protein_coding protein_coding MGP_C3HHeJ_T0074305.1 MGP_C3HHeJ_G0029829.1 mouse_genomes_project 5 133091734 133092046 + Nupr1l protein_coding processed_transcript MGP_C3HHeJ_T0008387.1 MGP_C3HHeJ_G0006793.1 mouse_genomes_project 5 154448061 154455748 + Gm43153 lincRNA lincRNA MGP_C3HHeJ_T0073963.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126704537 126727488 - MGP_C3HHeJ_P0073963 Zcchc8 protein_coding protein_coding MGP_C3HHeJ_T0073964.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126704545 126727432 - MGP_C3HHeJ_P0073964 Zcchc8 protein_coding protein_coding MGP_C3HHeJ_T0073965.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126706042 126709662 - Zcchc8 protein_coding retained_intron MGP_C3HHeJ_T0073966.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126710747 126725903 - MGP_C3HHeJ_P0073966 Zcchc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073967.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126710764 126714709 - Zcchc8 protein_coding retained_intron MGP_C3HHeJ_T0073968.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126714514 126720468 - MGP_C3HHeJ_P0073968 Zcchc8 protein_coding protein_coding MGP_C3HHeJ_T0073969.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126715421 126727211 - MGP_C3HHeJ_P0073969 Zcchc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073970.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126716954 126727250 - MGP_C3HHeJ_P0073970 Zcchc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0073971.1 MGP_C3HHeJ_G0029770.1 mouse_genomes_project 5 126720476 126727162 - MGP_C3HHeJ_P0073971 Zcchc8 protein_coding protein_coding MGP_C3HHeJ_T0008182.1 MGP_C3HHeJ_G0006660.1 mouse_genomes_project 5 110149175 110151086 + Gm10419 lincRNA lincRNA MGP_C3HHeJ_T0008183.1 MGP_C3HHeJ_G0006660.1 mouse_genomes_project 5 110149197 110154212 + Gm10419 lincRNA lincRNA MGP_C3HHeJ_T0008184.1 MGP_C3HHeJ_G0006660.1 mouse_genomes_project 5 110149642 110157277 + Gm10419 lincRNA lincRNA MGP_C3HHeJ_T0008185.1 MGP_C3HHeJ_G0006660.1 mouse_genomes_project 5 110151264 110159646 + Gm10419 lincRNA lincRNA MGP_C3HHeJ_T0008186.1 MGP_C3HHeJ_G0006660.1 mouse_genomes_project 5 110152266 110154213 + Gm10419 lincRNA lincRNA MGP_C3HHeJ_T0004659.1 MGP_C3HHeJ_G0004026.1 mouse_genomes_project 5 91243201 91259987 - Gm43449 antisense antisense MGP_C3HHeJ_T0074368.1 MGP_C3HHeJ_G0029843.1 mouse_genomes_project 5 134118595 134575213 - MGP_C3HHeJ_P0074368 Wbscr17 protein_coding protein_coding MGP_C3HHeJ_T0074369.1 MGP_C3HHeJ_G0029843.1 mouse_genomes_project 5 134219045 134574792 - MGP_C3HHeJ_P0074369 Wbscr17 protein_coding protein_coding MGP_C3HHeJ_T0074370.1 MGP_C3HHeJ_G0029843.1 mouse_genomes_project 5 134341253 134573631 - Wbscr17 protein_coding retained_intron MGP_C3HHeJ_T0074371.1 MGP_C3HHeJ_G0029843.1 mouse_genomes_project 5 134409695 134574589 - Wbscr17 protein_coding retained_intron MGP_C3HHeJ_T0074372.1 MGP_C3HHeJ_G0029843.1 mouse_genomes_project 5 134573565 134574794 - Wbscr17 protein_coding processed_transcript MGP_C3HHeJ_T0072058.1 MGP_C3HHeJ_G0029379.1 mouse_genomes_project 5 87657736 87674311 - MGP_C3HHeJ_P0072058 Ugt2b5 protein_coding protein_coding MGP_C3HHeJ_T0015000.1 MGP_C3HHeJ_G0013104.1 mouse_genomes_project 5 143947635 143948127 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001840.1 MGP_C3HHeJ_G0001762.1 mouse_genomes_project 5 137600398 137604068 - TEC TEC MGP_C3HHeJ_T0098146.1 MGP_C3HHeJ_G0036358.1 mouse_genomes_project 5 76041194 76041317 - Gm24738 rRNA rRNA MGP_C3HHeJ_T0001412.1 MGP_C3HHeJ_G0001342.1 mouse_genomes_project 5 9455202 9457952 - TEC TEC MGP_C3HHeJ_T0074181.1 MGP_C3HHeJ_G0029803.1 mouse_genomes_project 5 128441488 128442884 - MGP_C3HHeJ_P0074181 protein_coding protein_coding MGP_C3HHeJ_T0074155.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128032490 128208216 - MGP_C3HHeJ_P0074155 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074156.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128032490 128059034 - MGP_C3HHeJ_P0074156 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074157.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128032490 128208216 - MGP_C3HHeJ_P0074157 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074158.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128032492 128208216 - MGP_C3HHeJ_P0074158 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074159.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128032499 128208143 - MGP_C3HHeJ_P0074159 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074160.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128033172 128208216 - MGP_C3HHeJ_P0074160 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074161.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128033172 128142712 - MGP_C3HHeJ_P0074161 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074162.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128033229 128041739 - MGP_C3HHeJ_P0074162 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074163.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128033471 128041278 - MGP_C3HHeJ_P0074163 Ncor2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0074164.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128033569 128039436 - Ncor2 protein_coding retained_intron MGP_C3HHeJ_T0074165.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128041312 128043132 - MGP_C3HHeJ_P0074165 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074166.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128041318 128042304 - Ncor2 protein_coding retained_intron MGP_C3HHeJ_T0074167.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128047023 128075470 - MGP_C3HHeJ_P0074167 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0074168.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128064855 128073051 - Ncor2 protein_coding retained_intron MGP_C3HHeJ_T0074169.1 MGP_C3HHeJ_G0029801.1 mouse_genomes_project 5 128068006 128075481 - MGP_C3HHeJ_P0074169 Ncor2 protein_coding protein_coding MGP_C3HHeJ_T0072328.1 MGP_C3HHeJ_G0029453.1 mouse_genomes_project 5 93414828 93418199 + MGP_C3HHeJ_P0072328 Stbd1 protein_coding protein_coding MGP_C3HHeJ_T0072329.1 MGP_C3HHeJ_G0029453.1 mouse_genomes_project 5 93414838 93419959 + MGP_C3HHeJ_P0072329 Stbd1 protein_coding protein_coding MGP_C3HHeJ_T0072330.1 MGP_C3HHeJ_G0029453.1 mouse_genomes_project 5 93414855 93419674 + MGP_C3HHeJ_P0072330 Stbd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075566.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152075467 152200957 + MGP_C3HHeJ_P0075566 Pan3 protein_coding protein_coding MGP_C3HHeJ_T0075567.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152075759 152200951 + MGP_C3HHeJ_P0075567 Pan3 protein_coding protein_coding MGP_C3HHeJ_T0075568.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152076202 152101392 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075569.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152076202 152099782 + Pan3 protein_coding processed_transcript MGP_C3HHeJ_T0075570.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152076202 152179049 + MGP_C3HHeJ_P0075570 Pan3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075571.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152096809 152198430 + MGP_C3HHeJ_P0075571 Pan3 protein_coding protein_coding MGP_C3HHeJ_T0075572.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152096812 152139424 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075573.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152096816 152198430 + MGP_C3HHeJ_P0075573 Pan3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075574.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152096896 152178672 + MGP_C3HHeJ_P0075574 Pan3 protein_coding protein_coding MGP_C3HHeJ_T0075575.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152097856 152100160 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075576.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152099308 152143489 + Pan3 protein_coding processed_transcript MGP_C3HHeJ_T0075577.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152099339 152200951 + MGP_C3HHeJ_P0075577 Pan3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075578.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152169517 152173297 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075579.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152171301 152178702 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075580.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152178114 152179030 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075581.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152181726 152200943 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075582.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152181931 152183686 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075583.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152182007 152185299 + Pan3 protein_coding processed_transcript MGP_C3HHeJ_T0075584.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152183341 152185244 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075585.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152188813 152195618 + Pan3 protein_coding retained_intron MGP_C3HHeJ_T0075586.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152189705 152198161 + Pan3 protein_coding processed_transcript MGP_C3HHeJ_T0075587.1 MGP_C3HHeJ_G0030086.1 mouse_genomes_project 5 152191766 152200948 + MGP_C3HHeJ_P0075587 Pan3 protein_coding protein_coding MGP_C3HHeJ_T0070598.1 MGP_C3HHeJ_G0029129.1 mouse_genomes_project 5 29871806 29888508 - Rbks protein_coding processed_transcript MGP_C3HHeJ_T0070599.1 MGP_C3HHeJ_G0029129.1 mouse_genomes_project 5 29871806 29946346 - MGP_C3HHeJ_P0070599 Rbks protein_coding protein_coding MGP_C3HHeJ_T0070602.1 MGP_C3HHeJ_G0029129.1 mouse_genomes_project 5 29908896 29935699 - Rbks protein_coding processed_transcript MGP_C3HHeJ_T0001572.1 MGP_C3HHeJ_G0001498.1 mouse_genomes_project 5 57058290 57060885 + TEC TEC MGP_C3HHeJ_T0069741.1 MGP_C3HHeJ_G0028978.1 mouse_genomes_project 5 3855474 4455313 - MGP_C3HHeJ_P0069741 Zfp804b protein_coding protein_coding MGP_C3HHeJ_T0069742.1 MGP_C3HHeJ_G0028978.1 mouse_genomes_project 5 3855494 3960361 - MGP_C3HHeJ_P0069742 Zfp804b protein_coding protein_coding MGP_C3HHeJ_T0014971.1 MGP_C3HHeJ_G0013075.1 mouse_genomes_project 5 127526744 127527108 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0072331.1 MGP_C3HHeJ_G0029454.1 mouse_genomes_project 5 93421333 93427092 - Ccdc158 protein_coding retained_intron MGP_C3HHeJ_T0072332.1 MGP_C3HHeJ_G0029454.1 mouse_genomes_project 5 93421632 93489656 - MGP_C3HHeJ_P0072332 Ccdc158 protein_coding protein_coding MGP_C3HHeJ_T0072333.1 MGP_C3HHeJ_G0029454.1 mouse_genomes_project 5 93465918 93489796 - MGP_C3HHeJ_P0072333 Ccdc158 protein_coding protein_coding MGP_C3HHeJ_T0072334.1 MGP_C3HHeJ_G0029454.1 mouse_genomes_project 5 93465918 93489802 - MGP_C3HHeJ_P0072334 Ccdc158 protein_coding protein_coding MGP_C3HHeJ_T0071650.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284024 69299529 + MGP_C3HHeJ_P0071650 Guf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071651.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284054 69293813 + Guf1 protein_coding retained_intron MGP_C3HHeJ_T0071652.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284054 69293973 + MGP_C3HHeJ_P0071652 Guf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071653.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284062 69300903 + MGP_C3HHeJ_P0071653 Guf1 protein_coding protein_coding MGP_C3HHeJ_T0071654.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284089 69299530 + MGP_C3HHeJ_P0071654 Guf1 protein_coding protein_coding MGP_C3HHeJ_T0071655.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284174 69294829 + MGP_C3HHeJ_P0071655 Guf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0071656.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69284195 69299574 + MGP_C3HHeJ_P0071656 Guf1 protein_coding protein_coding MGP_C3HHeJ_T0071657.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69293827 69303772 + Guf1 protein_coding retained_intron MGP_C3HHeJ_T0071658.1 MGP_C3HHeJ_G0029303.1 mouse_genomes_project 5 69297294 69299282 + Guf1 protein_coding retained_intron MGP_C3HHeJ_T0011739.1 MGP_C3HHeJ_G0009847.1 mouse_genomes_project 5 123484312 123486263 + Oas1b polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011740.1 MGP_C3HHeJ_G0009847.1 mouse_genomes_project 5 123484315 123507596 + MGP_C3HHeJ_P0011740 Oas1b polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0073586.1 MGP_C3HHeJ_G0009847.1 mouse_genomes_project 5 123484534 123504743 + MGP_C3HHeJ_P0073586 Oas1b polymorphic_pseudogene unknown_likely_coding MGP_C3HHeJ_T0069879.1 MGP_C3HHeJ_G0029000.1 mouse_genomes_project 5 14084464 14104113 + Hgf protein_coding retained_intron MGP_C3HHeJ_T0069880.1 MGP_C3HHeJ_G0029000.1 mouse_genomes_project 5 14084519 14154518 + MGP_C3HHeJ_P0069880 Hgf protein_coding protein_coding MGP_C3HHeJ_T0069881.1 MGP_C3HHeJ_G0029000.1 mouse_genomes_project 5 14084548 14099706 + Hgf protein_coding retained_intron MGP_C3HHeJ_T0069882.1 MGP_C3HHeJ_G0029000.1 mouse_genomes_project 5 14084717 14100279 + Hgf protein_coding retained_intron MGP_C3HHeJ_T0069883.1 MGP_C3HHeJ_G0029000.1 mouse_genomes_project 5 14084752 14153714 + MGP_C3HHeJ_P0069883 Hgf protein_coding protein_coding MGP_C3HHeJ_T0069884.1 MGP_C3HHeJ_G0029000.1 mouse_genomes_project 5 14084894 14153418 + MGP_C3HHeJ_P0069884 Hgf protein_coding protein_coding MGP_C3HHeJ_T0001650.1 MGP_C3HHeJ_G0001574.1 mouse_genomes_project 5 72955298 72958676 - TEC TEC MGP_C3HHeJ_T0004799.1 MGP_C3HHeJ_G0004121.1 mouse_genomes_project 5 142912626 142919375 + 6330403L08Rik antisense antisense MGP_C3HHeJ_T0004800.1 MGP_C3HHeJ_G0004121.1 mouse_genomes_project 5 142912626 142919374 + 6330403L08Rik antisense antisense MGP_C3HHeJ_T0007956.1 MGP_C3HHeJ_G0006492.1 mouse_genomes_project 5 6160204 6161472 - Gm15611 lincRNA lincRNA MGP_C3HHeJ_T0001613.1 MGP_C3HHeJ_G0001538.1 mouse_genomes_project 5 65671792 65675176 - TEC TEC MGP_C3HHeJ_T0014766.1 MGP_C3HHeJ_G0012870.1 mouse_genomes_project 5 32898340 32898949 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015259.1 MGP_C3HHeJ_G0013363.1 mouse_genomes_project 6 86269791 86271528 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080280.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139526515 139622831 + MGP_C3HHeJ_P0080280 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080281.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139526519 139574106 + MGP_C3HHeJ_P0080281 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080282.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139526554 139593710 + MGP_C3HHeJ_P0080282 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080283.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139526559 139532107 + Atf7ip protein_coding retained_intron MGP_C3HHeJ_T0080284.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139540830 139597981 + MGP_C3HHeJ_P0080284 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080285.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139561498 139570220 + MGP_C3HHeJ_P0080285 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080286.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139564322 139570403 + MGP_C3HHeJ_P0080286 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080287.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139564340 139565536 + Atf7ip protein_coding retained_intron MGP_C3HHeJ_T0080288.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139571152 139582297 + MGP_C3HHeJ_P0080288 Atf7ip protein_coding protein_coding MGP_C3HHeJ_T0080289.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139587321 139593657 + Atf7ip protein_coding retained_intron MGP_C3HHeJ_T0080290.1 MGP_C3HHeJ_G0031126.1 mouse_genomes_project 6 139605806 139620277 + Atf7ip protein_coding retained_intron MGP_C3HHeJ_T0011536.1 MGP_C3HHeJ_G0009669.1 mouse_genomes_project 6 16095698 16096013 + Gm22718 misc_RNA misc_RNA MGP_C3HHeJ_T0015183.1 MGP_C3HHeJ_G0013287.1 mouse_genomes_project 6 57704396 57704642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077456.1 MGP_C3HHeJ_G0030513.1 mouse_genomes_project 6 57853068 57944777 - MGP_C3HHeJ_P0077456 Fam13a protein_coding protein_coding MGP_C3HHeJ_T0077457.1 MGP_C3HHeJ_G0030513.1 mouse_genomes_project 6 57856563 57944568 - MGP_C3HHeJ_P0077457 Fam13a protein_coding protein_coding MGP_C3HHeJ_T0077458.1 MGP_C3HHeJ_G0030513.1 mouse_genomes_project 6 57894980 57944650 - Fam13a protein_coding processed_transcript MGP_C3HHeJ_T0077459.1 MGP_C3HHeJ_G0030513.1 mouse_genomes_project 6 57923971 57944732 - Fam13a protein_coding retained_intron MGP_C3HHeJ_T0077460.1 MGP_C3HHeJ_G0030513.1 mouse_genomes_project 6 57940362 57944671 - Fam13a protein_coding retained_intron MGP_C3HHeJ_T0015131.1 MGP_C3HHeJ_G0013235.1 mouse_genomes_project 6 39529395 39529771 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015382.1 MGP_C3HHeJ_G0013486.1 mouse_genomes_project 6 122519673 122521104 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076456.1 MGP_C3HHeJ_G0030246.1 mouse_genomes_project 6 29701454 29710130 + 1700012A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0076457.1 MGP_C3HHeJ_G0030246.1 mouse_genomes_project 6 29701476 29710130 + 1700012A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0076458.1 MGP_C3HHeJ_G0030246.1 mouse_genomes_project 6 29701493 29710124 + MGP_C3HHeJ_P0076458 1700012A03Rik protein_coding protein_coding MGP_C3HHeJ_T0076459.1 MGP_C3HHeJ_G0030246.1 mouse_genomes_project 6 29709349 29709830 + 1700012A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0076203.1 MGP_C3HHeJ_G0030206.1 mouse_genomes_project 6 25878102 25884996 - MGP_C3HHeJ_P0076203 Pax4 protein_coding protein_coding MGP_C3HHeJ_T0076204.1 MGP_C3HHeJ_G0030206.1 mouse_genomes_project 6 25878102 25885098 - MGP_C3HHeJ_P0076204 Pax4 protein_coding protein_coding MGP_C3HHeJ_T0076205.1 MGP_C3HHeJ_G0030206.1 mouse_genomes_project 6 25878107 25884996 - MGP_C3HHeJ_P0076205 Pax4 protein_coding protein_coding MGP_C3HHeJ_T0076206.1 MGP_C3HHeJ_G0030206.1 mouse_genomes_project 6 25878143 25882925 - MGP_C3HHeJ_P0076206 Pax4 protein_coding protein_coding MGP_C3HHeJ_T0076207.1 MGP_C3HHeJ_G0030206.1 mouse_genomes_project 6 25879626 25882122 - Pax4 protein_coding retained_intron MGP_C3HHeJ_T0076208.1 MGP_C3HHeJ_G0030206.1 mouse_genomes_project 6 25880521 25882925 - Pax4 protein_coding retained_intron MGP_C3HHeJ_T0015300.1 MGP_C3HHeJ_G0013404.1 mouse_genomes_project 6 101382622 101383816 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015114.1 MGP_C3HHeJ_G0013218.1 mouse_genomes_project 6 32531379 32532075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100739.1 MGP_C3HHeJ_G0038933.1 mouse_genomes_project 6 10053130 10053259 + Gm24985 snoRNA snoRNA MGP_C3HHeJ_T0015045.1 MGP_C3HHeJ_G0013149.1 mouse_genomes_project 6 1103223 1103830 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077427.1 MGP_C3HHeJ_G0030509.1 mouse_genomes_project 6 57331969 57333002 - MGP_C3HHeJ_P0077427 Vmn1r31 protein_coding protein_coding MGP_C3HHeJ_T0077428.1 MGP_C3HHeJ_G0030509.1 mouse_genomes_project 6 57332627 57335298 - MGP_C3HHeJ_P0077428 Vmn1r31 protein_coding protein_coding MGP_C3HHeJ_T0077429.1 MGP_C3HHeJ_G0030509.1 mouse_genomes_project 6 57332627 57335252 - MGP_C3HHeJ_P0077429 Vmn1r31 protein_coding protein_coding MGP_C3HHeJ_T0077430.1 MGP_C3HHeJ_G0030509.1 mouse_genomes_project 6 57332627 57335329 - MGP_C3HHeJ_P0077430 Vmn1r31 protein_coding protein_coding MGP_C3HHeJ_T0008620.1 MGP_C3HHeJ_G0006958.1 mouse_genomes_project 6 102571761 102623681 + Gm43902 lincRNA lincRNA MGP_C3HHeJ_T0079427.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120055975 120127998 - MGP_C3HHeJ_P0079427 Smarcad1 protein_coding protein_coding MGP_C3HHeJ_T0079428.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120056438 120127394 - MGP_C3HHeJ_P0079428 Smarcad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079429.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120062058 120064583 - Smarcad1 protein_coding retained_intron MGP_C3HHeJ_T0079430.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120073216 120073859 - Smarcad1 protein_coding retained_intron MGP_C3HHeJ_T0079431.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120075360 120095070 - MGP_C3HHeJ_P0079431 Smarcad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079432.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120088559 120127728 - Smarcad1 protein_coding processed_transcript MGP_C3HHeJ_T0079433.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120089683 120092745 - Smarcad1 protein_coding retained_intron MGP_C3HHeJ_T0079434.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120095235 120112526 - Smarcad1 protein_coding processed_transcript MGP_C3HHeJ_T0079435.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120102634 120117395 - Smarcad1 protein_coding retained_intron MGP_C3HHeJ_T0079436.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120113701 120128024 - MGP_C3HHeJ_P0079436 Smarcad1 protein_coding protein_coding MGP_C3HHeJ_T0079437.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120117428 120127741 - MGP_C3HHeJ_P0079437 Smarcad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079438.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120117517 120127749 - MGP_C3HHeJ_P0079438 Smarcad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079439.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120126403 120127771 - MGP_C3HHeJ_P0079439 Smarcad1 protein_coding protein_coding MGP_C3HHeJ_T0079440.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120126475 120127940 - MGP_C3HHeJ_P0079440 Smarcad1 protein_coding protein_coding MGP_C3HHeJ_T0079441.1 MGP_C3HHeJ_G0030905.1 mouse_genomes_project 6 120127045 120127986 - Smarcad1 protein_coding retained_intron MGP_C3HHeJ_T0098523.1 MGP_C3HHeJ_G0036724.1 mouse_genomes_project 6 69407732 69409611 + Gm44167 sense_intronic sense_intronic MGP_C3HHeJ_T0078794.1 MGP_C3HHeJ_G0030770.1 mouse_genomes_project 6 98326508 98444905 + MGP_C3HHeJ_P0078794 protein_coding protein_coding MGP_C3HHeJ_T0078799.1 MGP_C3HHeJ_G0030770.1 mouse_genomes_project 6 98387907 98389290 + MGP_C3HHeJ_P0078799 protein_coding protein_coding MGP_C3HHeJ_T0080127.1 MGP_C3HHeJ_G0031069.1 mouse_genomes_project 6 132571189 132586646 - MGP_C3HHeJ_P0080127 protein_coding protein_coding MGP_C3HHeJ_T0080128.1 MGP_C3HHeJ_G0031069.1 mouse_genomes_project 6 132571293 132586574 - MGP_C3HHeJ_P0080128 protein_coding protein_coding MGP_C3HHeJ_T0076561.1 MGP_C3HHeJ_G0030263.1 mouse_genomes_project 6 32664712 32698483 - MGP_C3HHeJ_P0076561 protein_coding protein_coding MGP_C3HHeJ_T0076562.1 MGP_C3HHeJ_G0030263.1 mouse_genomes_project 6 32665369 32708886 - MGP_C3HHeJ_P0076562 protein_coding protein_coding MGP_C3HHeJ_T0076563.1 MGP_C3HHeJ_G0030263.1 mouse_genomes_project 6 32666937 32668012 - protein_coding processed_transcript MGP_C3HHeJ_T0076564.1 MGP_C3HHeJ_G0030263.1 mouse_genomes_project 6 32667870 32675333 - MGP_C3HHeJ_P0076564 protein_coding protein_coding MGP_C3HHeJ_T0076565.1 MGP_C3HHeJ_G0030263.1 mouse_genomes_project 6 32673268 32699538 - MGP_C3HHeJ_P0076565 protein_coding protein_coding MGP_C3HHeJ_T0079568.1 MGP_C3HHeJ_G0030931.1 mouse_genomes_project 6 124489134 124518890 + MGP_C3HHeJ_P0079568 Foxj2 protein_coding protein_coding MGP_C3HHeJ_T0079569.1 MGP_C3HHeJ_G0030931.1 mouse_genomes_project 6 124489731 124518865 + MGP_C3HHeJ_P0079569 Foxj2 protein_coding protein_coding MGP_C3HHeJ_T0079570.1 MGP_C3HHeJ_G0030931.1 mouse_genomes_project 6 124500244 124506804 + MGP_C3HHeJ_P0079570 Foxj2 protein_coding protein_coding MGP_C3HHeJ_T0077452.1 MGP_C3HHeJ_G0030512.1 mouse_genomes_project 6 57825599 57827443 - MGP_C3HHeJ_P0077452 Nap1l5 protein_coding protein_coding MGP_C3HHeJ_T0077453.1 MGP_C3HHeJ_G0030512.1 mouse_genomes_project 6 57826170 57827040 - MGP_C3HHeJ_P0077453 Nap1l5 protein_coding protein_coding MGP_C3HHeJ_T0002144.1 MGP_C3HHeJ_G0002065.1 mouse_genomes_project 6 150163254 150164498 + TEC TEC MGP_C3HHeJ_T0000267.1 MGP_C3HHeJ_G0000217.1 mouse_genomes_project 6 114838920 114839487 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0102095.1 MGP_C3HHeJ_G0040060.1 mouse_genomes_project 6 57313612 57314537 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0076082.1 MGP_C3HHeJ_G0030174.1 mouse_genomes_project 6 15918098 15930113 + MGP_C3HHeJ_P0076082 Ankrd7 protein_coding protein_coding MGP_C3HHeJ_T0076083.1 MGP_C3HHeJ_G0030174.1 mouse_genomes_project 6 15918130 15930109 + MGP_C3HHeJ_P0076083 Ankrd7 protein_coding protein_coding MGP_C3HHeJ_T0015167.1 MGP_C3HHeJ_G0013271.1 mouse_genomes_project 6 49485351 49485589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002129.1 MGP_C3HHeJ_G0002050.1 mouse_genomes_project 6 141762797 141763287 + TEC TEC MGP_C3HHeJ_T0000261.1 MGP_C3HHeJ_G0000211.1 mouse_genomes_project 6 114325670 114326236 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0077731.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66865922 66928177 - MGP_C3HHeJ_P0077731 Fam21 protein_coding protein_coding MGP_C3HHeJ_T0077732.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66865943 66928008 - Fam21 protein_coding retained_intron MGP_C3HHeJ_T0077733.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66871208 66927698 - MGP_C3HHeJ_P0077733 Fam21 protein_coding protein_coding MGP_C3HHeJ_T0077734.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66871223 66873637 - Fam21 protein_coding retained_intron MGP_C3HHeJ_T0077735.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66873364 66874387 - Fam21 protein_coding retained_intron MGP_C3HHeJ_T0077736.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66875117 66928169 - MGP_C3HHeJ_P0077736 Fam21 protein_coding protein_coding MGP_C3HHeJ_T0077737.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66902501 66906364 - Fam21 protein_coding retained_intron MGP_C3HHeJ_T0077738.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66904915 66914315 - MGP_C3HHeJ_P0077738 Fam21 protein_coding protein_coding MGP_C3HHeJ_T0077739.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66910001 66915660 - Fam21 protein_coding retained_intron MGP_C3HHeJ_T0077740.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66915664 66928159 - MGP_C3HHeJ_P0077740 Fam21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077741.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66920075 66928078 - MGP_C3HHeJ_P0077741 Fam21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077742.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66922255 66928093 - MGP_C3HHeJ_P0077742 Fam21 protein_coding protein_coding MGP_C3HHeJ_T0077743.1 MGP_C3HHeJ_G0030565.1 mouse_genomes_project 6 66926891 66928120 - Fam21 protein_coding retained_intron MGP_C3HHeJ_T0015174.1 MGP_C3HHeJ_G0013278.1 mouse_genomes_project 6 51766042 51767228 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076254.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26845742 26872066 + MGP_C3HHeJ_P0076254 Calu protein_coding protein_coding MGP_C3HHeJ_T0076255.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26845742 26872066 + MGP_C3HHeJ_P0076255 Calu protein_coding protein_coding MGP_C3HHeJ_T0076256.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26845779 26874238 + MGP_C3HHeJ_P0076256 Calu protein_coding protein_coding MGP_C3HHeJ_T0076257.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26845792 26873692 + MGP_C3HHeJ_P0076257 Calu protein_coding protein_coding MGP_C3HHeJ_T0076258.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26845801 26874239 + MGP_C3HHeJ_P0076258 Calu protein_coding protein_coding MGP_C3HHeJ_T0076259.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26853953 26872588 + MGP_C3HHeJ_P0076259 Calu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076260.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26858944 26870900 + MGP_C3HHeJ_P0076260 Calu protein_coding protein_coding MGP_C3HHeJ_T0076261.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26870104 26874673 + MGP_C3HHeJ_P0076261 Calu protein_coding protein_coding MGP_C3HHeJ_T0076262.1 MGP_C3HHeJ_G0030216.1 mouse_genomes_project 6 26871213 26872594 + Calu protein_coding processed_transcript MGP_C3HHeJ_T0008543.1 MGP_C3HHeJ_G0006900.1 mouse_genomes_project 6 65394598 65449288 + lincRNA lincRNA MGP_C3HHeJ_T0015299.1 MGP_C3HHeJ_G0013403.1 mouse_genomes_project 6 101313141 101313499 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078792.1 MGP_C3HHeJ_G0030768.1 mouse_genomes_project 6 98315399 98317091 + MGP_C3HHeJ_P0078792 Nat8 protein_coding protein_coding MGP_C3HHeJ_T0004860.1 MGP_C3HHeJ_G0004166.1 mouse_genomes_project 6 34708070 34757312 + 1700111E14Rik antisense antisense MGP_C3HHeJ_T0015338.1 MGP_C3HHeJ_G0013442.1 mouse_genomes_project 6 116799565 116800257 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100769.1 MGP_C3HHeJ_G0038963.1 mouse_genomes_project 6 78237571 78237710 - Gm23339 snoRNA snoRNA MGP_C3HHeJ_T0004934.1 MGP_C3HHeJ_G0004218.1 mouse_genomes_project 6 91857310 91861034 + 4930466I24Rik antisense antisense MGP_C3HHeJ_T0077235.1 MGP_C3HHeJ_G0030448.1 mouse_genomes_project 6 51352048 51495131 - Jazf1 protein_coding processed_transcript MGP_C3HHeJ_T0077236.1 MGP_C3HHeJ_G0030448.1 mouse_genomes_project 6 51352048 51361561 - Jazf1 protein_coding processed_transcript MGP_C3HHeJ_T0077237.1 MGP_C3HHeJ_G0030448.1 mouse_genomes_project 6 51352048 51661392 - MGP_C3HHeJ_P0077237 Jazf1 protein_coding protein_coding MGP_C3HHeJ_T0079126.1 MGP_C3HHeJ_G0030834.1 mouse_genomes_project 6 105872913 105878810 - MGP_C3HHeJ_P0079126 Reg1 protein_coding protein_coding MGP_C3HHeJ_T0079127.1 MGP_C3HHeJ_G0030834.1 mouse_genomes_project 6 105872913 105878870 - MGP_C3HHeJ_P0079127 Reg1 protein_coding protein_coding MGP_C3HHeJ_T0079128.1 MGP_C3HHeJ_G0030834.1 mouse_genomes_project 6 105872914 105875598 - MGP_C3HHeJ_P0079128 Reg1 protein_coding protein_coding MGP_C3HHeJ_T0078174.1 MGP_C3HHeJ_G0030645.1 mouse_genomes_project 6 83944610 83946998 - MGP_C3HHeJ_P0078174 Gpr27 protein_coding protein_coding MGP_C3HHeJ_T0005057.1 MGP_C3HHeJ_G0004309.1 mouse_genomes_project 6 150862153 150894884 - Gm6288 antisense antisense MGP_C3HHeJ_T0005058.1 MGP_C3HHeJ_G0004309.1 mouse_genomes_project 6 150894199 150895115 - Gm6288 antisense antisense MGP_C3HHeJ_T0079400.1 MGP_C3HHeJ_G0030896.1 mouse_genomes_project 6 118512906 118513942 + MGP_C3HHeJ_P0079400 Vmn1r33 protein_coding protein_coding MGP_C3HHeJ_T0076315.1 MGP_C3HHeJ_G0030226.1 mouse_genomes_project 6 27268522 27271017 + Smo protein_coding retained_intron MGP_C3HHeJ_T0076316.1 MGP_C3HHeJ_G0030226.1 mouse_genomes_project 6 27268707 27297526 + MGP_C3HHeJ_P0076316 Smo protein_coding protein_coding MGP_C3HHeJ_T0080236.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951198 137963183 + MGP_C3HHeJ_P0080236 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0080237.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951208 137958317 + MGP_C3HHeJ_P0080237 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0080238.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951210 137958281 + MGP_C3HHeJ_P0080238 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0080239.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951212 137955909 + Ddx47 protein_coding retained_intron MGP_C3HHeJ_T0080240.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951218 137963179 + Ddx47 protein_coding retained_intron MGP_C3HHeJ_T0080241.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951219 137957396 + MGP_C3HHeJ_P0080241 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0080242.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951221 137954906 + Ddx47 protein_coding retained_intron MGP_C3HHeJ_T0080243.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951230 137960846 + MGP_C3HHeJ_P0080243 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0080244.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137951239 137960869 + MGP_C3HHeJ_P0080244 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0080245.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137954630 137958346 + Ddx47 protein_coding processed_transcript MGP_C3HHeJ_T0080246.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137955101 137957814 + Ddx47 protein_coding retained_intron MGP_C3HHeJ_T0080247.1 MGP_C3HHeJ_G0031116.1 mouse_genomes_project 6 137958279 137963179 + MGP_C3HHeJ_P0080247 Ddx47 protein_coding protein_coding MGP_C3HHeJ_T0001904.1 MGP_C3HHeJ_G0001826.1 mouse_genomes_project 6 26262092 26265340 + TEC TEC MGP_C3HHeJ_T0015154.1 MGP_C3HHeJ_G0013258.1 mouse_genomes_project 6 47390259 47391349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099548.1 MGP_C3HHeJ_G0037742.1 mouse_genomes_project 6 127872685 127872795 + Gm24947 snRNA snRNA MGP_C3HHeJ_T0102090.1 MGP_C3HHeJ_G0040055.1 mouse_genomes_project 6 56909192 56910102 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078641.1 MGP_C3HHeJ_G0030743.1 mouse_genomes_project 6 96753570 96809929 + Antxr1 protein_coding retained_intron MGP_C3HHeJ_T0078642.1 MGP_C3HHeJ_G0030743.1 mouse_genomes_project 6 96753627 96959004 + MGP_C3HHeJ_P0078642 Antxr1 protein_coding protein_coding MGP_C3HHeJ_T0078643.1 MGP_C3HHeJ_G0030743.1 mouse_genomes_project 6 96753627 96912777 + MGP_C3HHeJ_P0078643 Antxr1 protein_coding protein_coding MGP_C3HHeJ_T0078644.1 MGP_C3HHeJ_G0030743.1 mouse_genomes_project 6 96753667 96935138 + MGP_C3HHeJ_P0078644 Antxr1 protein_coding protein_coding MGP_C3HHeJ_T0078645.1 MGP_C3HHeJ_G0030743.1 mouse_genomes_project 6 96781157 96959001 + MGP_C3HHeJ_P0078645 Antxr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078646.1 MGP_C3HHeJ_G0030743.1 mouse_genomes_project 6 96820206 96888031 + Antxr1 protein_coding processed_transcript MGP_C3HHeJ_T0015423.1 MGP_C3HHeJ_G0013527.1 mouse_genomes_project 6 130814002 130814159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099502.1 MGP_C3HHeJ_G0037696.1 mouse_genomes_project 6 15799200 15799307 + Gm23648 snRNA snRNA MGP_C3HHeJ_T0002042.1 MGP_C3HHeJ_G0001963.1 mouse_genomes_project 6 97134434 97136230 - TEC TEC MGP_C3HHeJ_T0076782.1 MGP_C3HHeJ_G0030317.1 mouse_genomes_project 6 38969199 38974592 - MGP_C3HHeJ_P0076782 protein_coding protein_coding MGP_C3HHeJ_T0010665.1 MGP_C3HHeJ_G0008798.1 mouse_genomes_project 6 26897036 26897125 + Gm26220 miRNA miRNA MGP_C3HHeJ_T0015238.1 MGP_C3HHeJ_G0013342.1 mouse_genomes_project 6 77947422 77947730 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004980.1 MGP_C3HHeJ_G0004245.1 mouse_genomes_project 6 101152177 101153485 + Ccdc142os antisense antisense MGP_C3HHeJ_T0004981.1 MGP_C3HHeJ_G0004245.1 mouse_genomes_project 6 101152177 101154624 + Ccdc142os antisense antisense MGP_C3HHeJ_T0004982.1 MGP_C3HHeJ_G0004245.1 mouse_genomes_project 6 101152178 101154613 + Ccdc142os antisense antisense MGP_C3HHeJ_T0004983.1 MGP_C3HHeJ_G0004245.1 mouse_genomes_project 6 101152244 101154365 + Ccdc142os antisense antisense MGP_C3HHeJ_T0015257.1 MGP_C3HHeJ_G0013361.1 mouse_genomes_project 6 84918368 84918648 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004924.1 MGP_C3HHeJ_G0004213.1 mouse_genomes_project 6 82387304 82527493 - Gm43948 antisense antisense MGP_C3HHeJ_T0100756.1 MGP_C3HHeJ_G0038950.1 mouse_genomes_project 6 52477685 52477817 - Gm22910 snoRNA snoRNA MGP_C3HHeJ_T0078311.1 MGP_C3HHeJ_G0030672.1 mouse_genomes_project 6 91688101 91704049 + MGP_C3HHeJ_P0078311 Mrps25 protein_coding protein_coding MGP_C3HHeJ_T0078312.1 MGP_C3HHeJ_G0030672.1 mouse_genomes_project 6 91688163 91693822 + Mrps25 protein_coding retained_intron MGP_C3HHeJ_T0078313.1 MGP_C3HHeJ_G0030672.1 mouse_genomes_project 6 91696231 91697296 + Mrps25 protein_coding retained_intron MGP_C3HHeJ_T0015226.1 MGP_C3HHeJ_G0013330.1 mouse_genomes_project 6 72952249 72952824 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100761.1 MGP_C3HHeJ_G0038955.1 mouse_genomes_project 6 58022906 58023038 + Gm22367 snoRNA snoRNA MGP_C3HHeJ_T0079131.1 MGP_C3HHeJ_G0030837.1 mouse_genomes_project 6 105914572 105917564 + MGP_C3HHeJ_P0079131 Reg3d protein_coding protein_coding MGP_C3HHeJ_T0079132.1 MGP_C3HHeJ_G0030837.1 mouse_genomes_project 6 105914572 105917564 + MGP_C3HHeJ_P0079132 Reg3d protein_coding protein_coding MGP_C3HHeJ_T0079133.1 MGP_C3HHeJ_G0030837.1 mouse_genomes_project 6 105914924 105917514 + MGP_C3HHeJ_P0079133 Reg3d protein_coding protein_coding MGP_C3HHeJ_T0015368.1 MGP_C3HHeJ_G0013472.1 mouse_genomes_project 6 119749843 119751446 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076865.1 MGP_C3HHeJ_G0030349.1 mouse_genomes_project 6 40485435 40486377 - MGP_C3HHeJ_P0076865 Olfr458 protein_coding protein_coding MGP_C3HHeJ_T0079044.1 MGP_C3HHeJ_G0030818.1 mouse_genomes_project 6 101194908 101206008 - MGP_C3HHeJ_P0079044 Dqx1 protein_coding protein_coding MGP_C3HHeJ_T0079045.1 MGP_C3HHeJ_G0030818.1 mouse_genomes_project 6 101203863 101205755 - MGP_C3HHeJ_P0079045 Dqx1 protein_coding non_stop_decay MGP_C3HHeJ_T0005040.1 MGP_C3HHeJ_G0004293.1 mouse_genomes_project 6 141602868 141619970 + Gm30332 antisense antisense MGP_C3HHeJ_T0002625.1 MGP_C3HHeJ_G0002517.1 mouse_genomes_project 6 39204111 39204565 + MGP_C3HHeJ_P0002625 Trbv23 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002626.1 MGP_C3HHeJ_G0002517.1 mouse_genomes_project 6 39204111 39204565 + MGP_C3HHeJ_P0002626 Trbv23 TR_V_gene TR_V_gene MGP_C3HHeJ_T0018095.1 MGP_C3HHeJ_G0015412.1 mouse_genomes_project 6 146084283 146103547 + Gm7457 processed_transcript antisense MGP_C3HHeJ_T0018096.1 MGP_C3HHeJ_G0015412.1 mouse_genomes_project 6 146084437 146087010 + Gm7457 processed_transcript retained_intron MGP_C3HHeJ_T0099549.1 MGP_C3HHeJ_G0037743.1 mouse_genomes_project 6 131411086 131411149 + Gm26160 snRNA snRNA MGP_C3HHeJ_T0015046.1 MGP_C3HHeJ_G0013150.1 mouse_genomes_project 6 1135054 1135376 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080084.1 MGP_C3HHeJ_G0031052.1 mouse_genomes_project 6 131780694 131787361 + MGP_C3HHeJ_P0080084 Tmem52b protein_coding protein_coding MGP_C3HHeJ_T0080085.1 MGP_C3HHeJ_G0031052.1 mouse_genomes_project 6 131780752 131785593 + MGP_C3HHeJ_P0080085 Tmem52b protein_coding protein_coding MGP_C3HHeJ_T0080086.1 MGP_C3HHeJ_G0031052.1 mouse_genomes_project 6 131783940 131785624 + Tmem52b protein_coding retained_intron MGP_C3HHeJ_T0080087.1 MGP_C3HHeJ_G0031052.1 mouse_genomes_project 6 131784690 131785674 + Tmem52b protein_coding retained_intron MGP_C3HHeJ_T0079498.1 MGP_C3HHeJ_G0030916.1 mouse_genomes_project 6 122782131 122883731 - MGP_C3HHeJ_P0079498 Iqsec3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079499.1 MGP_C3HHeJ_G0030916.1 mouse_genomes_project 6 122782131 122883689 - MGP_C3HHeJ_P0079499 Iqsec3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079500.1 MGP_C3HHeJ_G0030916.1 mouse_genomes_project 6 122782131 122883744 - MGP_C3HHeJ_P0079500 Iqsec3 protein_coding protein_coding MGP_C3HHeJ_T0079501.1 MGP_C3HHeJ_G0030916.1 mouse_genomes_project 6 122789036 122883629 - MGP_C3HHeJ_P0079501 Iqsec3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079502.1 MGP_C3HHeJ_G0030916.1 mouse_genomes_project 6 122813241 122883744 - MGP_C3HHeJ_P0079502 Iqsec3 protein_coding protein_coding MGP_C3HHeJ_T0015330.1 MGP_C3HHeJ_G0013434.1 mouse_genomes_project 6 114398660 114400005 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077195.1 MGP_C3HHeJ_G0030437.1 mouse_genomes_project 6 50739913 50741996 - MGP_C3HHeJ_P0077195 Hoxa4 protein_coding protein_coding MGP_C3HHeJ_T0000141.1 MGP_C3HHeJ_G0000109.1 mouse_genomes_project 6 114632861 114633441 + MGP_C3HHeJ_P0000141 Igkv6-32 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002611.1 MGP_C3HHeJ_G0002505.1 mouse_genomes_project 6 39093925 39094443 + MGP_C3HHeJ_P0002611 Trbv12-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0100748.1 MGP_C3HHeJ_G0038942.1 mouse_genomes_project 6 36880668 36880794 + Gm23010 snoRNA snoRNA MGP_C3HHeJ_T0011524.1 MGP_C3HHeJ_G0009657.1 mouse_genomes_project 6 3631461 3631668 + Gm27905 misc_RNA misc_RNA MGP_C3HHeJ_T0080558.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148349592 148408254 - MGP_C3HHeJ_P0080558 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080559.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148354915 148439270 - MGP_C3HHeJ_P0080559 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080560.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148360493 148439270 - MGP_C3HHeJ_P0080560 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080561.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148360773 148394598 - Bcat1 protein_coding processed_transcript MGP_C3HHeJ_T0080562.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148364136 148408052 - MGP_C3HHeJ_P0080562 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080563.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148372194 148392141 - MGP_C3HHeJ_P0080563 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080564.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148375708 148407295 - MGP_C3HHeJ_P0080564 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080565.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148392087 148400197 - Bcat1 protein_coding processed_transcript MGP_C3HHeJ_T0080566.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148392106 148407103 - MGP_C3HHeJ_P0080566 Bcat1 protein_coding protein_coding MGP_C3HHeJ_T0080567.1 MGP_C3HHeJ_G0031179.1 mouse_genomes_project 6 148392170 148400309 - Bcat1 protein_coding processed_transcript MGP_C3HHeJ_T0004951.1 MGP_C3HHeJ_G0004231.1 mouse_genomes_project 6 96409405 96416011 - Gm44097 antisense antisense MGP_C3HHeJ_T0015441.1 MGP_C3HHeJ_G0013545.1 mouse_genomes_project 6 135504191 135504462 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000302.1 MGP_C3HHeJ_G0000252.1 mouse_genomes_project 6 117240941 117241194 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0001887.1 MGP_C3HHeJ_G0001809.1 mouse_genomes_project 6 12796345 12798081 + TEC TEC MGP_C3HHeJ_T0002036.1 MGP_C3HHeJ_G0001957.1 mouse_genomes_project 6 96541610 96544246 - TEC TEC MGP_C3HHeJ_T0078920.1 MGP_C3HHeJ_G0030792.1 mouse_genomes_project 6 100474418 100480101 - MGP_C3HHeJ_P0078920 Ankrd53 protein_coding protein_coding MGP_C3HHeJ_T0078921.1 MGP_C3HHeJ_G0030792.1 mouse_genomes_project 6 100474707 100480059 - MGP_C3HHeJ_P0078921 Ankrd53 protein_coding protein_coding MGP_C3HHeJ_T0015472.1 MGP_C3HHeJ_G0013576.1 mouse_genomes_project 6 150579301 150581843 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015239.1 MGP_C3HHeJ_G0013343.1 mouse_genomes_project 6 78397113 78399049 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080377.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141270153 141288543 + MGP_C3HHeJ_P0080377 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080378.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141270365 141288393 + MGP_C3HHeJ_P0080378 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080379.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141270391 141288180 + MGP_C3HHeJ_P0080379 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080380.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141270408 141288530 + MGP_C3HHeJ_P0080380 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080381.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141270436 141288172 + MGP_C3HHeJ_P0080381 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080382.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141271207 141288347 + MGP_C3HHeJ_P0080382 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080383.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141271423 141288400 + MGP_C3HHeJ_P0080383 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0080384.1 MGP_C3HHeJ_G0031144.1 mouse_genomes_project 6 141272691 141282692 + MGP_C3HHeJ_P0080384 Mgst1 protein_coding protein_coding MGP_C3HHeJ_T0077816.1 MGP_C3HHeJ_G0030579.1 mouse_genomes_project 6 67575833 67610589 - MGP_C3HHeJ_P0077816 Tsen2 protein_coding protein_coding MGP_C3HHeJ_T0077817.1 MGP_C3HHeJ_G0030579.1 mouse_genomes_project 6 67576481 67580023 - Tsen2 protein_coding retained_intron MGP_C3HHeJ_T0077818.1 MGP_C3HHeJ_G0030579.1 mouse_genomes_project 6 67594641 67610551 - Tsen2 protein_coding processed_transcript MGP_C3HHeJ_T0077819.1 MGP_C3HHeJ_G0030579.1 mouse_genomes_project 6 67600030 67610589 - MGP_C3HHeJ_P0077819 Tsen2 protein_coding protein_coding MGP_C3HHeJ_T0077820.1 MGP_C3HHeJ_G0030579.1 mouse_genomes_project 6 67601951 67610547 - Tsen2 protein_coding retained_intron MGP_C3HHeJ_T0100767.1 MGP_C3HHeJ_G0038961.1 mouse_genomes_project 6 67334299 67334439 + Snora7a snoRNA snoRNA MGP_C3HHeJ_T0000280.1 MGP_C3HHeJ_G0000230.1 mouse_genomes_project 6 115966538 115966824 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0010702.1 MGP_C3HHeJ_G0008835.1 mouse_genomes_project 6 88932585 88932653 - Gm23364 miRNA miRNA MGP_C3HHeJ_T0080677.1 MGP_C3HHeJ_G0031198.1 mouse_genomes_project 6 150343305 150347399 - MGP_C3HHeJ_P0080677 1700034J05Rik protein_coding protein_coding MGP_C3HHeJ_T0080678.1 MGP_C3HHeJ_G0031198.1 mouse_genomes_project 6 150344278 150347391 - MGP_C3HHeJ_P0080678 1700034J05Rik protein_coding protein_coding MGP_C3HHeJ_T0076126.1 MGP_C3HHeJ_G0030183.1 mouse_genomes_project 6 20528331 20531648 - MGP_C3HHeJ_P0076126 Fezf1 protein_coding protein_coding MGP_C3HHeJ_T0015082.1 MGP_C3HHeJ_G0013186.1 mouse_genomes_project 6 15845288 15845552 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008625.1 MGP_C3HHeJ_G0006963.1 mouse_genomes_project 6 111464644 111468648 - Gm26640 lincRNA lincRNA MGP_C3HHeJ_T0004972.1 MGP_C3HHeJ_G0004242.1 mouse_genomes_project 6 100529664 100548637 + Vax2os antisense antisense MGP_C3HHeJ_T0004973.1 MGP_C3HHeJ_G0004242.1 mouse_genomes_project 6 100530933 100541342 + Vax2os antisense antisense MGP_C3HHeJ_T0004974.1 MGP_C3HHeJ_G0004242.1 mouse_genomes_project 6 100538243 100539386 + Vax2os antisense antisense MGP_C3HHeJ_T0004975.1 MGP_C3HHeJ_G0004242.1 mouse_genomes_project 6 100538322 100539664 + Vax2os antisense antisense MGP_C3HHeJ_T0015190.1 MGP_C3HHeJ_G0013294.1 mouse_genomes_project 6 60468088 60468512 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102104.1 MGP_C3HHeJ_G0040069.1 mouse_genomes_project 6 94076287 94077229 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078691.1 MGP_C3HHeJ_G0030750.1 mouse_genomes_project 6 97425548 97435096 + MGP_C3HHeJ_P0078691 Snrnp27 protein_coding protein_coding MGP_C3HHeJ_T0078692.1 MGP_C3HHeJ_G0030750.1 mouse_genomes_project 6 97425548 97434575 + MGP_C3HHeJ_P0078692 Snrnp27 protein_coding protein_coding MGP_C3HHeJ_T0078693.1 MGP_C3HHeJ_G0030750.1 mouse_genomes_project 6 97425553 97427394 + Snrnp27 protein_coding processed_transcript MGP_C3HHeJ_T0078694.1 MGP_C3HHeJ_G0030750.1 mouse_genomes_project 6 97425579 97434842 + Snrnp27 protein_coding processed_transcript MGP_C3HHeJ_T0077694.1 MGP_C3HHeJ_G0030555.1 mouse_genomes_project 6 66441454 66443627 - MGP_C3HHeJ_P0077694 8430408G22Rik protein_coding protein_coding MGP_C3HHeJ_T0077695.1 MGP_C3HHeJ_G0030555.1 mouse_genomes_project 6 66441454 66443646 - MGP_C3HHeJ_P0077695 8430408G22Rik protein_coding protein_coding MGP_C3HHeJ_T0077696.1 MGP_C3HHeJ_G0030555.1 mouse_genomes_project 6 66442343 66443559 - MGP_C3HHeJ_P0077696 8430408G22Rik protein_coding protein_coding MGP_C3HHeJ_T0000305.1 MGP_C3HHeJ_G0000255.1 mouse_genomes_project 6 117424913 117425210 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0001991.1 MGP_C3HHeJ_G0001912.1 mouse_genomes_project 6 82254588 82257439 + TEC TEC MGP_C3HHeJ_T0079959.1 MGP_C3HHeJ_G0031019.1 mouse_genomes_project 6 129965419 130033485 + MGP_C3HHeJ_P0079959 Tspan11 protein_coding protein_coding MGP_C3HHeJ_T0079960.1 MGP_C3HHeJ_G0031019.1 mouse_genomes_project 6 129965609 130002674 + Tspan11 protein_coding retained_intron MGP_C3HHeJ_T0080670.1 MGP_C3HHeJ_G0031196.1 mouse_genomes_project 6 150247505 150269134 + MGP_C3HHeJ_P0080670 Smco2 protein_coding protein_coding MGP_C3HHeJ_T0080671.1 MGP_C3HHeJ_G0031196.1 mouse_genomes_project 6 150247558 150253726 + Smco2 protein_coding retained_intron MGP_C3HHeJ_T0080672.1 MGP_C3HHeJ_G0031196.1 mouse_genomes_project 6 150254404 150261744 + Smco2 protein_coding processed_transcript MGP_C3HHeJ_T0080673.1 MGP_C3HHeJ_G0031196.1 mouse_genomes_project 6 150259416 150265881 + Smco2 protein_coding processed_transcript MGP_C3HHeJ_T0077655.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65131720 65135787 + MGP_C3HHeJ_P0077655 Fxyd4 protein_coding protein_coding MGP_C3HHeJ_T0077656.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65134504 + Fxyd4 protein_coding retained_intron MGP_C3HHeJ_T0077657.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65134513 + Fxyd4 protein_coding retained_intron MGP_C3HHeJ_T0077658.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65135617 + MGP_C3HHeJ_P0077658 Fxyd4 protein_coding protein_coding MGP_C3HHeJ_T0077659.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65135786 + MGP_C3HHeJ_P0077659 Fxyd4 protein_coding protein_coding MGP_C3HHeJ_T0077660.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65135786 + MGP_C3HHeJ_P0077660 Fxyd4 protein_coding protein_coding MGP_C3HHeJ_T0077661.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65135786 + MGP_C3HHeJ_P0077661 Fxyd4 protein_coding protein_coding MGP_C3HHeJ_T0077662.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65132077 65135786 + MGP_C3HHeJ_P0077662 Fxyd4 protein_coding protein_coding MGP_C3HHeJ_T0077663.1 MGP_C3HHeJ_G0030548.1 mouse_genomes_project 6 65133459 65134506 + Fxyd4 protein_coding retained_intron MGP_C3HHeJ_T0015050.1 MGP_C3HHeJ_G0013154.1 mouse_genomes_project 6 3182557 3182782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078502.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95142927 95153764 + Podxl2 protein_coding retained_intron MGP_C3HHeJ_T0078503.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95142937 95176610 + MGP_C3HHeJ_P0078503 Podxl2 protein_coding protein_coding MGP_C3HHeJ_T0078504.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95143120 95169702 + MGP_C3HHeJ_P0078504 Podxl2 protein_coding protein_coding MGP_C3HHeJ_T0078505.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95143178 95169702 + MGP_C3HHeJ_P0078505 Podxl2 protein_coding protein_coding MGP_C3HHeJ_T0078506.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95143539 95153229 + Podxl2 protein_coding retained_intron MGP_C3HHeJ_T0078507.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95152773 95169567 + Podxl2 protein_coding processed_transcript MGP_C3HHeJ_T0078508.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95170003 95175201 + Podxl2 protein_coding processed_transcript MGP_C3HHeJ_T0078509.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95170537 95172413 + Podxl2 protein_coding retained_intron MGP_C3HHeJ_T0078510.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95173454 95175839 + Podxl2 protein_coding retained_intron MGP_C3HHeJ_T0078511.1 MGP_C3HHeJ_G0030716.1 mouse_genomes_project 6 95175656 95176819 + Podxl2 protein_coding processed_transcript MGP_C3HHeJ_T0002001.1 MGP_C3HHeJ_G0001922.1 mouse_genomes_project 6 86133108 86134774 + TEC TEC MGP_C3HHeJ_T0080134.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133835340 133845012 - MGP_C3HHeJ_P0080134 Magohb protein_coding protein_coding MGP_C3HHeJ_T0080135.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133835465 133836826 - Magohb protein_coding retained_intron MGP_C3HHeJ_T0080136.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133835475 133844899 - MGP_C3HHeJ_P0080136 Magohb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080137.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133835557 133844042 - MGP_C3HHeJ_P0080137 Magohb protein_coding protein_coding MGP_C3HHeJ_T0080138.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133835617 133841408 - Magohb protein_coding retained_intron MGP_C3HHeJ_T0080139.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133835653 133844919 - MGP_C3HHeJ_P0080139 Magohb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080140.1 MGP_C3HHeJ_G0031073.1 mouse_genomes_project 6 133839091 133844919 - MGP_C3HHeJ_P0080140 Magohb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000287.1 MGP_C3HHeJ_G0000237.1 mouse_genomes_project 6 116438798 116439097 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0102110.1 MGP_C3HHeJ_G0040075.1 mouse_genomes_project 6 114131499 114131647 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008623.1 MGP_C3HHeJ_G0006961.1 mouse_genomes_project 6 110832837 110855955 + Gm31747 lincRNA lincRNA MGP_C3HHeJ_T0076361.1 MGP_C3HHeJ_G0030230.1 mouse_genomes_project 6 27754087 27855961 - MGP_C3HHeJ_P0076361 Ube2h protein_coding protein_coding MGP_C3HHeJ_T0076362.1 MGP_C3HHeJ_G0030230.1 mouse_genomes_project 6 27759307 27855944 - MGP_C3HHeJ_P0076362 Ube2h protein_coding protein_coding MGP_C3HHeJ_T0076363.1 MGP_C3HHeJ_G0030230.1 mouse_genomes_project 6 27766727 27855950 - Ube2h protein_coding processed_transcript MGP_C3HHeJ_T0011553.1 MGP_C3HHeJ_G0009686.1 mouse_genomes_project 6 50799620 50799824 + Gm27454 misc_RNA misc_RNA MGP_C3HHeJ_T0005050.1 MGP_C3HHeJ_G0004302.1 mouse_genomes_project 6 148067715 148069053 + Sox5os5 antisense antisense MGP_C3HHeJ_T0005032.1 MGP_C3HHeJ_G0004287.1 mouse_genomes_project 6 137832380 137835481 + 2810454H06Rik antisense antisense MGP_C3HHeJ_T0001881.1 MGP_C3HHeJ_G0001803.1 mouse_genomes_project 6 3665756 3667790 - TEC TEC MGP_C3HHeJ_T0008573.1 MGP_C3HHeJ_G0006925.1 mouse_genomes_project 6 84979452 84984118 + Gm44196 lincRNA lincRNA MGP_C3HHeJ_T0008574.1 MGP_C3HHeJ_G0006925.1 mouse_genomes_project 6 84979482 85014141 + Gm44196 lincRNA lincRNA MGP_C3HHeJ_T0008575.1 MGP_C3HHeJ_G0006925.1 mouse_genomes_project 6 84979501 85179213 + Gm44196 lincRNA lincRNA MGP_C3HHeJ_T0079171.1 MGP_C3HHeJ_G0030848.1 mouse_genomes_project 6 111646004 111814120 + MGP_C3HHeJ_P0079171 Tcf7l1 protein_coding protein_coding MGP_C3HHeJ_T0079172.1 MGP_C3HHeJ_G0030848.1 mouse_genomes_project 6 111646306 111813239 + MGP_C3HHeJ_P0079172 Tcf7l1 protein_coding protein_coding MGP_C3HHeJ_T0079173.1 MGP_C3HHeJ_G0030848.1 mouse_genomes_project 6 111646660 111806356 + MGP_C3HHeJ_P0079173 Tcf7l1 protein_coding protein_coding MGP_C3HHeJ_T0079174.1 MGP_C3HHeJ_G0030848.1 mouse_genomes_project 6 111767158 111789524 + Tcf7l1 protein_coding processed_transcript MGP_C3HHeJ_T0079175.1 MGP_C3HHeJ_G0030848.1 mouse_genomes_project 6 111810260 111812920 + Tcf7l1 protein_coding processed_transcript MGP_C3HHeJ_T0015268.1 MGP_C3HHeJ_G0013372.1 mouse_genomes_project 6 89440265 89440656 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002088.1 MGP_C3HHeJ_G0002009.1 mouse_genomes_project 6 112709564 112710826 - TEC TEC MGP_C3HHeJ_T0002109.1 MGP_C3HHeJ_G0002030.1 mouse_genomes_project 6 130256960 130258378 - TEC TEC MGP_C3HHeJ_T0004984.1 MGP_C3HHeJ_G0004246.1 mouse_genomes_project 6 101518074 101521081 - Gm17034 antisense antisense MGP_C3HHeJ_T0076631.1 MGP_C3HHeJ_G0030279.1 mouse_genomes_project 6 36106573 36122995 - MGP_C3HHeJ_P0076631 Zc3hav1l protein_coding protein_coding MGP_C3HHeJ_T0080069.1 MGP_C3HHeJ_G0031048.1 mouse_genomes_project 6 131665402 131674074 + MGP_C3HHeJ_P0080069 Clec1b protein_coding protein_coding MGP_C3HHeJ_T0080070.1 MGP_C3HHeJ_G0031048.1 mouse_genomes_project 6 131665410 131674062 + MGP_C3HHeJ_P0080070 Clec1b protein_coding protein_coding MGP_C3HHeJ_T0080071.1 MGP_C3HHeJ_G0031048.1 mouse_genomes_project 6 131671345 131678142 + Clec1b protein_coding retained_intron MGP_C3HHeJ_T0080674.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150287155 150425719 + MGP_C3HHeJ_P0080674 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0080675.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150287177 150371064 + MGP_C3HHeJ_P0080675 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0080676.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150287257 150425719 + MGP_C3HHeJ_P0080676 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0080679.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150369492 150385449 + MGP_C3HHeJ_P0080679 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0080680.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150385493 150399663 + MGP_C3HHeJ_P0080680 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0080681.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150390144 150395945 + Ppfibp1 protein_coding processed_transcript MGP_C3HHeJ_T0080682.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150393245 150425717 + Ppfibp1 protein_coding retained_intron MGP_C3HHeJ_T0080683.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150394015 150411139 + Ppfibp1 protein_coding retained_intron MGP_C3HHeJ_T0080684.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150395389 150399691 + Ppfibp1 protein_coding retained_intron MGP_C3HHeJ_T0080685.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150395938 150412867 + MGP_C3HHeJ_P0080685 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0080686.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150398803 150400021 + Ppfibp1 protein_coding retained_intron MGP_C3HHeJ_T0080687.1 MGP_C3HHeJ_G0031197.1 mouse_genomes_project 6 150404572 150413274 + MGP_C3HHeJ_P0080687 Ppfibp1 protein_coding protein_coding MGP_C3HHeJ_T0077488.1 MGP_C3HHeJ_G0030521.1 mouse_genomes_project 6 62149910 62170418 - MGP_C3HHeJ_P0077488 Slc25a18 protein_coding protein_coding MGP_C3HHeJ_T0002048.1 MGP_C3HHeJ_G0001969.1 mouse_genomes_project 6 97621103 97624330 - TEC TEC MGP_C3HHeJ_T0015210.1 MGP_C3HHeJ_G0013314.1 mouse_genomes_project 6 68063995 68064326 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079216.1 MGP_C3HHeJ_G0030855.1 mouse_genomes_project 6 112022782 112039232 - MGP_C3HHeJ_P0079216 Ggcx protein_coding protein_coding MGP_C3HHeJ_T0079217.1 MGP_C3HHeJ_G0030855.1 mouse_genomes_project 6 112023152 112039199 - MGP_C3HHeJ_P0079217 Ggcx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079218.1 MGP_C3HHeJ_G0030855.1 mouse_genomes_project 6 112023311 112035635 - MGP_C3HHeJ_P0079218 Ggcx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079219.1 MGP_C3HHeJ_G0030855.1 mouse_genomes_project 6 112024295 112026906 - MGP_C3HHeJ_P0079219 Ggcx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079220.1 MGP_C3HHeJ_G0030855.1 mouse_genomes_project 6 112029466 112035584 - MGP_C3HHeJ_P0079220 Ggcx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079424.1 MGP_C3HHeJ_G0030904.1 mouse_genomes_project 6 120027062 120054744 + MGP_C3HHeJ_P0079424 Hpgds protein_coding protein_coding MGP_C3HHeJ_T0079425.1 MGP_C3HHeJ_G0030904.1 mouse_genomes_project 6 120033707 120039999 + Hpgds protein_coding retained_intron MGP_C3HHeJ_T0079426.1 MGP_C3HHeJ_G0030904.1 mouse_genomes_project 6 120049111 120053001 + Hpgds protein_coding retained_intron MGP_C3HHeJ_T0015442.1 MGP_C3HHeJ_G0013546.1 mouse_genomes_project 6 135613544 135613921 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076820.1 MGP_C3HHeJ_G0030338.1 mouse_genomes_project 6 40239214 40240174 + MGP_C3HHeJ_P0076820 Tas2r144 protein_coding protein_coding MGP_C3HHeJ_T0008687.1 MGP_C3HHeJ_G0007009.1 mouse_genomes_project 6 146819326 146820870 - 4930579D09Rik lincRNA lincRNA MGP_C3HHeJ_T0079828.1 MGP_C3HHeJ_G0030989.1 mouse_genomes_project 6 127094520 127099231 - Gapdh protein_coding retained_intron MGP_C3HHeJ_T0079829.1 MGP_C3HHeJ_G0030989.1 mouse_genomes_project 6 127095704 127099829 - MGP_C3HHeJ_P0079829 Gapdh protein_coding unknown_likely_coding MGP_C3HHeJ_T0079830.1 MGP_C3HHeJ_G0030989.1 mouse_genomes_project 6 127097573 127099831 - Gapdh protein_coding processed_transcript MGP_C3HHeJ_T0079831.1 MGP_C3HHeJ_G0030989.1 mouse_genomes_project 6 127098824 127099833 - Gapdh protein_coding retained_intron MGP_C3HHeJ_T0004873.1 MGP_C3HHeJ_G0004177.1 mouse_genomes_project 6 41391617 41392931 - Gm44731 antisense antisense MGP_C3HHeJ_T0010673.1 MGP_C3HHeJ_G0008806.1 mouse_genomes_project 6 33250887 33250983 - Gm23053 miRNA miRNA MGP_C3HHeJ_T0015478.1 MGP_C3HHeJ_G0013582.1 mouse_genomes_project 6 152513262 152513585 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100808.1 MGP_C3HHeJ_G0039002.1 mouse_genomes_project 6 148844211 148844326 + Gm25373 snoRNA snoRNA MGP_C3HHeJ_T0077305.1 MGP_C3HHeJ_G0030461.1 mouse_genomes_project 6 53630398 53640768 - MGP_C3HHeJ_P0077305 Ggct protein_coding protein_coding MGP_C3HHeJ_T0077306.1 MGP_C3HHeJ_G0030461.1 mouse_genomes_project 6 53633491 53640525 - Ggct protein_coding processed_transcript MGP_C3HHeJ_T0077307.1 MGP_C3HHeJ_G0030461.1 mouse_genomes_project 6 53633775 53640679 - MGP_C3HHeJ_P0077307 Ggct protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077308.1 MGP_C3HHeJ_G0030461.1 mouse_genomes_project 6 53633799 53640681 - MGP_C3HHeJ_P0077308 Ggct protein_coding protein_coding MGP_C3HHeJ_T0077309.1 MGP_C3HHeJ_G0030461.1 mouse_genomes_project 6 53634324 53640681 - Ggct protein_coding retained_intron MGP_C3HHeJ_T0077310.1 MGP_C3HHeJ_G0030461.1 mouse_genomes_project 6 53636945 53640442 - Ggct protein_coding retained_intron MGP_C3HHeJ_T0015120.1 MGP_C3HHeJ_G0013224.1 mouse_genomes_project 6 36103705 36104129 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076170.1 MGP_C3HHeJ_G0030199.1 mouse_genomes_project 6 23012140 23037248 - MGP_C3HHeJ_P0076170 Gpr37 protein_coding protein_coding MGP_C3HHeJ_T0076171.1 MGP_C3HHeJ_G0030199.1 mouse_genomes_project 6 23013670 23038185 - MGP_C3HHeJ_P0076171 Gpr37 protein_coding protein_coding MGP_C3HHeJ_T0015231.1 MGP_C3HHeJ_G0013335.1 mouse_genomes_project 6 74167577 74168164 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079248.1 MGP_C3HHeJ_G0030861.1 mouse_genomes_project 6 112112477 112138956 + MGP_C3HHeJ_P0079248 Usp39 protein_coding protein_coding MGP_C3HHeJ_T0079249.1 MGP_C3HHeJ_G0030861.1 mouse_genomes_project 6 112114537 112121574 + MGP_C3HHeJ_P0079249 Usp39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079250.1 MGP_C3HHeJ_G0030861.1 mouse_genomes_project 6 112124463 112136334 + Usp39 protein_coding retained_intron MGP_C3HHeJ_T0077919.1 MGP_C3HHeJ_G0030597.1 mouse_genomes_project 6 69621160 69625114 + MGP_C3HHeJ_P0077919 Fancd2os protein_coding protein_coding MGP_C3HHeJ_T0077920.1 MGP_C3HHeJ_G0030597.1 mouse_genomes_project 6 69621160 69625115 + MGP_C3HHeJ_P0077920 Fancd2os protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015449.1 MGP_C3HHeJ_G0013553.1 mouse_genomes_project 6 138078195 138078569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078233.1 MGP_C3HHeJ_G0030653.1 mouse_genomes_project 6 86491157 86515593 - MGP_C3HHeJ_P0078233 Arl6ip5 protein_coding protein_coding MGP_C3HHeJ_T0015298.1 MGP_C3HHeJ_G0013402.1 mouse_genomes_project 6 101271868 101272625 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004879.1 MGP_C3HHeJ_G0004182.1 mouse_genomes_project 6 50706582 50708212 + Hotairm1 antisense antisense MGP_C3HHeJ_T0004880.1 MGP_C3HHeJ_G0004182.1 mouse_genomes_project 6 50708115 50711822 + Hotairm1 antisense antisense MGP_C3HHeJ_T0004881.1 MGP_C3HHeJ_G0004182.1 mouse_genomes_project 6 50708207 50711723 + Hotairm1 antisense antisense MGP_C3HHeJ_T0004861.1 MGP_C3HHeJ_G0004167.1 mouse_genomes_project 6 36783739 36850815 - Gm42962 antisense antisense MGP_C3HHeJ_T0080001.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130508697 130527507 - MGP_C3HHeJ_P0080001 Itfg2 protein_coding protein_coding MGP_C3HHeJ_T0080002.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130508751 130509632 - MGP_C3HHeJ_P0080002 Itfg2 protein_coding protein_coding MGP_C3HHeJ_T0080003.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130508786 130527494 - MGP_C3HHeJ_P0080003 Itfg2 protein_coding protein_coding MGP_C3HHeJ_T0080004.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130509463 130527445 - MGP_C3HHeJ_P0080004 Itfg2 protein_coding protein_coding MGP_C3HHeJ_T0080005.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130509509 130509937 - Itfg2 protein_coding retained_intron MGP_C3HHeJ_T0080006.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130510837 130514593 - Itfg2 protein_coding retained_intron MGP_C3HHeJ_T0080007.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130512258 130527488 - MGP_C3HHeJ_P0080007 Itfg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080008.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130512891 130527489 - MGP_C3HHeJ_P0080008 Itfg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080009.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130515859 130527506 - Itfg2 protein_coding retained_intron MGP_C3HHeJ_T0080010.1 MGP_C3HHeJ_G0031028.1 mouse_genomes_project 6 130523573 130527494 - Itfg2 protein_coding retained_intron MGP_C3HHeJ_T0076069.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15414425 15476623 - Cttnbp2 protein_coding retained_intron MGP_C3HHeJ_T0076070.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15414512 15482840 - MGP_C3HHeJ_P0076070 Cttnbp2 protein_coding protein_coding MGP_C3HHeJ_T0076071.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15414654 15566774 - MGP_C3HHeJ_P0076071 Cttnbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076072.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15415168 15566846 - MGP_C3HHeJ_P0076072 Cttnbp2 protein_coding protein_coding MGP_C3HHeJ_T0076073.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15437988 15456457 - MGP_C3HHeJ_P0076073 Cttnbp2 protein_coding protein_coding MGP_C3HHeJ_T0076074.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15480328 15566824 - Cttnbp2 protein_coding retained_intron MGP_C3HHeJ_T0076075.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15483639 15565115 - MGP_C3HHeJ_P0076075 Cttnbp2 protein_coding protein_coding MGP_C3HHeJ_T0076076.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15497666 15553723 - MGP_C3HHeJ_P0076076 Cttnbp2 protein_coding protein_coding MGP_C3HHeJ_T0076077.1 MGP_C3HHeJ_G0030172.1 mouse_genomes_project 6 15553292 15566868 - Cttnbp2 protein_coding retained_intron MGP_C3HHeJ_T0004888.1 MGP_C3HHeJ_G0004186.1 mouse_genomes_project 6 50867852 50874299 - Evx1os antisense antisense MGP_C3HHeJ_T0004889.1 MGP_C3HHeJ_G0004186.1 mouse_genomes_project 6 50870299 50872972 - Evx1os antisense antisense MGP_C3HHeJ_T0008539.1 MGP_C3HHeJ_G0006896.1 mouse_genomes_project 6 64753506 64761687 + Gm30498 lincRNA lincRNA MGP_C3HHeJ_T0080115.1 MGP_C3HHeJ_G0031062.1 mouse_genomes_project 6 132127417 132157282 - MGP_C3HHeJ_P0080115 Klra17 protein_coding protein_coding MGP_C3HHeJ_T0080116.1 MGP_C3HHeJ_G0031062.1 mouse_genomes_project 6 132127427 132157284 - MGP_C3HHeJ_P0080116 Klra17 protein_coding protein_coding MGP_C3HHeJ_T0008542.1 MGP_C3HHeJ_G0006899.1 mouse_genomes_project 6 65177152 65177473 - Gm29509 lincRNA lincRNA MGP_C3HHeJ_T0015454.1 MGP_C3HHeJ_G0013558.1 mouse_genomes_project 6 139709044 139709323 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076141.1 MGP_C3HHeJ_G0030186.1 mouse_genomes_project 6 20962481 20963720 - MGP_C3HHeJ_P0076141 Rnf148 protein_coding protein_coding MGP_C3HHeJ_T0002103.1 MGP_C3HHeJ_G0002024.1 mouse_genomes_project 6 129364909 129367135 + TEC TEC MGP_C3HHeJ_T0080371.1 MGP_C3HHeJ_G0031143.1 mouse_genomes_project 6 141116583 141171925 - MGP_C3HHeJ_P0080371 Slc15a5 protein_coding protein_coding MGP_C3HHeJ_T0080372.1 MGP_C3HHeJ_G0031143.1 mouse_genomes_project 6 141116587 141203743 - Slc15a5 protein_coding retained_intron MGP_C3HHeJ_T0080373.1 MGP_C3HHeJ_G0031143.1 mouse_genomes_project 6 141116587 141210383 - MGP_C3HHeJ_P0080373 Slc15a5 protein_coding protein_coding MGP_C3HHeJ_T0080374.1 MGP_C3HHeJ_G0031143.1 mouse_genomes_project 6 141151916 141164566 - MGP_C3HHeJ_P0080374 Slc15a5 protein_coding protein_coding MGP_C3HHeJ_T0080375.1 MGP_C3HHeJ_G0031143.1 mouse_genomes_project 6 141160944 141171995 - MGP_C3HHeJ_P0080375 Slc15a5 protein_coding protein_coding MGP_C3HHeJ_T0080376.1 MGP_C3HHeJ_G0031143.1 mouse_genomes_project 6 141164739 141185100 - Slc15a5 protein_coding retained_intron MGP_C3HHeJ_T0004862.1 MGP_C3HHeJ_G0004168.1 mouse_genomes_project 6 36933063 36936784 - 1700025N23Rik antisense antisense MGP_C3HHeJ_T0015347.1 MGP_C3HHeJ_G0013451.1 mouse_genomes_project 6 117611871 117614634 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078626.1 MGP_C3HHeJ_G0030736.1 mouse_genomes_project 6 96400474 96446299 + MGP_C3HHeJ_P0078626 Aplf protein_coding protein_coding MGP_C3HHeJ_T0078627.1 MGP_C3HHeJ_G0030736.1 mouse_genomes_project 6 96400520 96447361 + MGP_C3HHeJ_P0078627 Aplf protein_coding protein_coding MGP_C3HHeJ_T0078628.1 MGP_C3HHeJ_G0030736.1 mouse_genomes_project 6 96400538 96424040 + Aplf protein_coding retained_intron MGP_C3HHeJ_T0078629.1 MGP_C3HHeJ_G0030736.1 mouse_genomes_project 6 96400603 96446304 + MGP_C3HHeJ_P0078629 Aplf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078220.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86095351 86370547 + Frmd4b protein_coding retained_intron MGP_C3HHeJ_T0078221.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86230610 86397143 + Frmd4b protein_coding processed_transcript MGP_C3HHeJ_T0078222.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86230659 86436038 + MGP_C3HHeJ_P0078222 Frmd4b protein_coding protein_coding MGP_C3HHeJ_T0078223.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86261996 86435813 + MGP_C3HHeJ_P0078223 Frmd4b protein_coding protein_coding MGP_C3HHeJ_T0078224.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86290372 86330110 + MGP_C3HHeJ_P0078224 Frmd4b protein_coding protein_coding MGP_C3HHeJ_T0078225.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86329630 86397801 + Frmd4b protein_coding processed_transcript MGP_C3HHeJ_T0078226.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86329662 86330578 + Frmd4b protein_coding retained_intron MGP_C3HHeJ_T0078227.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86367302 86414209 + Frmd4b protein_coding retained_intron MGP_C3HHeJ_T0078228.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86397318 86414780 + Frmd4b protein_coding processed_transcript MGP_C3HHeJ_T0078229.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86409681 86415704 + Frmd4b protein_coding retained_intron MGP_C3HHeJ_T0078230.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86409731 86435819 + Frmd4b protein_coding processed_transcript MGP_C3HHeJ_T0078231.1 MGP_C3HHeJ_G0030651.1 mouse_genomes_project 6 86431648 86435869 + Frmd4b protein_coding retained_intron MGP_C3HHeJ_T0004942.1 MGP_C3HHeJ_G0004225.1 mouse_genomes_project 6 95520135 95520808 - Gm44170 antisense antisense MGP_C3HHeJ_T0015053.1 MGP_C3HHeJ_G0013157.1 mouse_genomes_project 6 4001593 4002868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004875.1 MGP_C3HHeJ_G0004179.1 mouse_genomes_project 6 47004455 47012875 - Gm44119 antisense antisense MGP_C3HHeJ_T0075804.1 MGP_C3HHeJ_G0030124.1 mouse_genomes_project 6 1349477 1391876 + MGP_C3HHeJ_P0075804 Casd1 protein_coding protein_coding MGP_C3HHeJ_T0075805.1 MGP_C3HHeJ_G0030124.1 mouse_genomes_project 6 1349587 1372941 + MGP_C3HHeJ_P0075805 Casd1 protein_coding protein_coding MGP_C3HHeJ_T0075806.1 MGP_C3HHeJ_G0030124.1 mouse_genomes_project 6 1349784 1357345 + MGP_C3HHeJ_P0075806 Casd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075807.1 MGP_C3HHeJ_G0030124.1 mouse_genomes_project 6 1349841 1369808 + MGP_C3HHeJ_P0075807 Casd1 protein_coding protein_coding MGP_C3HHeJ_T0075808.1 MGP_C3HHeJ_G0030124.1 mouse_genomes_project 6 1379674 1389503 + MGP_C3HHeJ_P0075808 Casd1 protein_coding protein_coding MGP_C3HHeJ_T0015406.1 MGP_C3HHeJ_G0013510.1 mouse_genomes_project 6 127722316 127722706 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008502.1 MGP_C3HHeJ_G0006868.1 mouse_genomes_project 6 47266136 47272224 + Gm7932 lincRNA lincRNA MGP_C3HHeJ_T0008503.1 MGP_C3HHeJ_G0006868.1 mouse_genomes_project 6 47266231 47270585 + Gm7932 lincRNA lincRNA MGP_C3HHeJ_T0075924.1 MGP_C3HHeJ_G0030149.1 mouse_genomes_project 6 5782746 5786746 + Nxph1 protein_coding processed_transcript MGP_C3HHeJ_T0075925.1 MGP_C3HHeJ_G0030149.1 mouse_genomes_project 6 5782929 6090344 + MGP_C3HHeJ_P0075925 Nxph1 protein_coding protein_coding MGP_C3HHeJ_T0075926.1 MGP_C3HHeJ_G0030149.1 mouse_genomes_project 6 5783991 6090342 + MGP_C3HHeJ_P0075926 Nxph1 protein_coding protein_coding MGP_C3HHeJ_T0015076.1 MGP_C3HHeJ_G0013180.1 mouse_genomes_project 6 13233921 13234168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001927.1 MGP_C3HHeJ_G0001849.1 mouse_genomes_project 6 43377776 43381457 + TEC TEC MGP_C3HHeJ_T0079759.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126874096 126881223 - MGP_C3HHeJ_P0079759 Cops7a protein_coding protein_coding MGP_C3HHeJ_T0079760.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126874499 126881133 - MGP_C3HHeJ_P0079760 Cops7a protein_coding protein_coding MGP_C3HHeJ_T0079761.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126874917 126875825 - Cops7a protein_coding retained_intron MGP_C3HHeJ_T0079762.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126875590 126880975 - MGP_C3HHeJ_P0079762 Cops7a protein_coding protein_coding MGP_C3HHeJ_T0079763.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126876841 126881093 - MGP_C3HHeJ_P0079763 Cops7a protein_coding protein_coding MGP_C3HHeJ_T0079764.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126878306 126880892 - MGP_C3HHeJ_P0079764 Cops7a protein_coding protein_coding MGP_C3HHeJ_T0079765.1 MGP_C3HHeJ_G0030980.1 mouse_genomes_project 6 126880238 126881197 - Cops7a protein_coding retained_intron MGP_C3HHeJ_T0015396.1 MGP_C3HHeJ_G0013500.1 mouse_genomes_project 6 124769268 124769419 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002614.1 MGP_C3HHeJ_G0002507.1 mouse_genomes_project 6 39099259 39099773 + MGP_C3HHeJ_P0002614 Trbv12-2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0077408.1 MGP_C3HHeJ_G0030498.1 mouse_genomes_project 6 56511366 56517648 - MGP_C3HHeJ_P0077408 Pyurf protein_coding protein_coding MGP_C3HHeJ_T0015044.1 MGP_C3HHeJ_G0013148.1 mouse_genomes_project 6 1005384 1005480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078996.1 MGP_C3HHeJ_G0030807.1 mouse_genomes_project 6 101103081 101104938 + MGP_C3HHeJ_P0078996 Wdr54 protein_coding protein_coding MGP_C3HHeJ_T0078997.1 MGP_C3HHeJ_G0030807.1 mouse_genomes_project 6 101103081 101110105 + MGP_C3HHeJ_P0078997 Wdr54 protein_coding protein_coding MGP_C3HHeJ_T0078998.1 MGP_C3HHeJ_G0030807.1 mouse_genomes_project 6 101103099 101104280 + Wdr54 protein_coding processed_transcript MGP_C3HHeJ_T0078999.1 MGP_C3HHeJ_G0030807.1 mouse_genomes_project 6 101103113 101106752 + Wdr54 protein_coding retained_intron MGP_C3HHeJ_T0079000.1 MGP_C3HHeJ_G0030807.1 mouse_genomes_project 6 101103213 101106180 + Wdr54 protein_coding processed_transcript MGP_C3HHeJ_T0079001.1 MGP_C3HHeJ_G0030807.1 mouse_genomes_project 6 101103258 101106756 + Wdr54 protein_coding retained_intron MGP_C3HHeJ_T0102131.1 MGP_C3HHeJ_G0040095.1 mouse_genomes_project 6 135487543 135487908 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078176.1 MGP_C3HHeJ_G0030647.1 mouse_genomes_project 6 83973545 84016421 + MGP_C3HHeJ_P0078176 Eif4e3 protein_coding protein_coding MGP_C3HHeJ_T0008551.1 MGP_C3HHeJ_G0006906.1 mouse_genomes_project 6 67618688 67627507 + Gm44082 lincRNA lincRNA MGP_C3HHeJ_T0002029.1 MGP_C3HHeJ_G0001950.1 mouse_genomes_project 6 96000494 96003333 + TEC TEC MGP_C3HHeJ_T0004953.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97534986 97569704 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004954.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97535416 97590164 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004955.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97553019 97589655 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004956.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97553019 97590703 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004957.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97553019 97590729 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004958.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97553020 97589573 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004959.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97553963 97589500 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0004960.1 MGP_C3HHeJ_G0004233.1 mouse_genomes_project 6 97566304 97590729 - 1600020E01Rik antisense antisense MGP_C3HHeJ_T0078454.1 MGP_C3HHeJ_G0030707.1 mouse_genomes_project 6 94121248 94122317 + MGP_C3HHeJ_P0078454 Vmn1r43 protein_coding protein_coding MGP_C3HHeJ_T0078552.1 MGP_C3HHeJ_G0030722.1 mouse_genomes_project 6 95581657 95781818 + MGP_C3HHeJ_P0078552 Eefsec protein_coding protein_coding MGP_C3HHeJ_T0078553.1 MGP_C3HHeJ_G0030722.1 mouse_genomes_project 6 95581669 95781279 + MGP_C3HHeJ_P0078553 Eefsec protein_coding protein_coding MGP_C3HHeJ_T0078554.1 MGP_C3HHeJ_G0030722.1 mouse_genomes_project 6 95581682 95780879 + MGP_C3HHeJ_P0078554 Eefsec protein_coding protein_coding MGP_C3HHeJ_T0078555.1 MGP_C3HHeJ_G0030722.1 mouse_genomes_project 6 95581694 95757249 + MGP_C3HHeJ_P0078555 Eefsec protein_coding protein_coding MGP_C3HHeJ_T0078556.1 MGP_C3HHeJ_G0030722.1 mouse_genomes_project 6 95581712 95740322 + MGP_C3HHeJ_P0078556 Eefsec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078557.1 MGP_C3HHeJ_G0030722.1 mouse_genomes_project 6 95588356 95740505 + MGP_C3HHeJ_P0078557 Eefsec protein_coding protein_coding MGP_C3HHeJ_T0015069.1 MGP_C3HHeJ_G0013173.1 mouse_genomes_project 6 9996135 9997138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102113.1 MGP_C3HHeJ_G0040078.1 mouse_genomes_project 6 125734902 125742500 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015134.1 MGP_C3HHeJ_G0013238.1 mouse_genomes_project 6 40768373 40768539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078253.1 MGP_C3HHeJ_G0030658.1 mouse_genomes_project 6 87059692 87630299 - MGP_C3HHeJ_P0078253 Fam19a1 protein_coding protein_coding MGP_C3HHeJ_T0078254.1 MGP_C3HHeJ_G0030658.1 mouse_genomes_project 6 87060423 87628138 - MGP_C3HHeJ_P0078254 Fam19a1 protein_coding protein_coding MGP_C3HHeJ_T0078256.1 MGP_C3HHeJ_G0030658.1 mouse_genomes_project 6 87610364 87630211 - Fam19a1 protein_coding processed_transcript MGP_C3HHeJ_T0078257.1 MGP_C3HHeJ_G0030658.1 mouse_genomes_project 6 87627531 87628800 - Fam19a1 protein_coding processed_transcript MGP_C3HHeJ_T0004843.1 MGP_C3HHeJ_G0004152.1 mouse_genomes_project 6 25638515 25683574 + 6530409C15Rik antisense antisense MGP_C3HHeJ_T0004844.1 MGP_C3HHeJ_G0004152.1 mouse_genomes_project 6 25638536 25641863 + 6530409C15Rik antisense antisense MGP_C3HHeJ_T0079559.1 MGP_C3HHeJ_G0030929.1 mouse_genomes_project 6 124357246 124366697 + MGP_C3HHeJ_P0079559 Nanog protein_coding protein_coding MGP_C3HHeJ_T0008421.1 MGP_C3HHeJ_G0006814.1 mouse_genomes_project 6 4566642 4577808 + Gm44217 lincRNA lincRNA MGP_C3HHeJ_T0015212.1 MGP_C3HHeJ_G0013316.1 mouse_genomes_project 6 68432778 68433211 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002082.1 MGP_C3HHeJ_G0002003.1 mouse_genomes_project 6 111794076 111795304 + TEC TEC MGP_C3HHeJ_T0015199.1 MGP_C3HHeJ_G0013303.1 mouse_genomes_project 6 64438772 64440371 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015198.1 MGP_C3HHeJ_G0013302.1 mouse_genomes_project 6 63112864 63113748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015188.1 MGP_C3HHeJ_G0013292.1 mouse_genomes_project 6 59926737 59927262 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079402.1 MGP_C3HHeJ_G0030898.1 mouse_genomes_project 6 118591571 118603555 - MGP_C3HHeJ_P0079402 Mad2l1 protein_coding protein_coding MGP_C3HHeJ_T0079403.1 MGP_C3HHeJ_G0030898.1 mouse_genomes_project 6 118602871 118603267 - Mad2l1 protein_coding processed_transcript MGP_C3HHeJ_T0098525.1 MGP_C3HHeJ_G0036726.1 mouse_genomes_project 6 84269042 84272935 + Gm20705 sense_intronic sense_intronic MGP_C3HHeJ_T0000170.1 MGP_C3HHeJ_G0000130.1 mouse_genomes_project 6 116113214 116113770 + MGP_C3HHeJ_P0000170 Igkv4-92 IG_V_gene IG_V_gene MGP_C3HHeJ_T0080417.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143628543 143807774 + MGP_C3HHeJ_P0080417 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080418.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143628649 143800195 + MGP_C3HHeJ_P0080418 Plekha5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080419.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143628650 143797379 + MGP_C3HHeJ_P0080419 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080420.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143637478 143761814 + MGP_C3HHeJ_P0080420 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080421.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143723912 143761815 + MGP_C3HHeJ_P0080421 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080422.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143732353 143797379 + MGP_C3HHeJ_P0080422 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080423.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143743955 143807774 + Plekha5 protein_coding processed_transcript MGP_C3HHeJ_T0080424.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143752772 143807774 + MGP_C3HHeJ_P0080424 Plekha5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080425.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143752798 143766743 + Plekha5 protein_coding processed_transcript MGP_C3HHeJ_T0080426.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143752802 143807774 + MGP_C3HHeJ_P0080426 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080427.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143752937 143807774 + MGP_C3HHeJ_P0080427 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080428.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143777278 143807780 + MGP_C3HHeJ_P0080428 Plekha5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080429.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143778110 143789886 + Plekha5 protein_coding retained_intron MGP_C3HHeJ_T0080430.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143785723 143789893 + Plekha5 protein_coding retained_intron MGP_C3HHeJ_T0080431.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143785911 143807774 + MGP_C3HHeJ_P0080431 Plekha5 protein_coding protein_coding MGP_C3HHeJ_T0080432.1 MGP_C3HHeJ_G0031152.1 mouse_genomes_project 6 143791970 143794818 + Plekha5 protein_coding retained_intron MGP_C3HHeJ_T0008476.1 MGP_C3HHeJ_G0006853.1 mouse_genomes_project 6 32992005 33003314 + 1810058I24Rik lincRNA lincRNA MGP_C3HHeJ_T0008477.1 MGP_C3HHeJ_G0006853.1 mouse_genomes_project 6 32992067 33000962 + 1810058I24Rik lincRNA lincRNA MGP_C3HHeJ_T0008478.1 MGP_C3HHeJ_G0006853.1 mouse_genomes_project 6 32992083 33001346 + 1810058I24Rik lincRNA lincRNA MGP_C3HHeJ_T0002612.1 MGP_C3HHeJ_G0002506.1 mouse_genomes_project 6 39096382 39096844 + MGP_C3HHeJ_P0002612 Trbv13-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002613.1 MGP_C3HHeJ_G0002506.1 mouse_genomes_project 6 39096411 39096844 + MGP_C3HHeJ_P0002613 Trbv13-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0001913.1 MGP_C3HHeJ_G0001835.1 mouse_genomes_project 6 31367313 31369441 - TEC TEC MGP_C3HHeJ_T0079538.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124130244 124139753 + MGP_C3HHeJ_P0079538 Mfap5 protein_coding protein_coding MGP_C3HHeJ_T0079539.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124137960 124154480 + MGP_C3HHeJ_P0079539 Mfap5 protein_coding protein_coding MGP_C3HHeJ_T0079540.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124137960 124153956 + MGP_C3HHeJ_P0079540 Mfap5 protein_coding protein_coding MGP_C3HHeJ_T0079541.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124138036 124153822 + MGP_C3HHeJ_P0079541 Mfap5 protein_coding protein_coding MGP_C3HHeJ_T0079542.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124138053 124153528 + MGP_C3HHeJ_P0079542 Mfap5 protein_coding protein_coding MGP_C3HHeJ_T0079543.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124138053 124153822 + MGP_C3HHeJ_P0079543 Mfap5 protein_coding protein_coding MGP_C3HHeJ_T0079544.1 MGP_C3HHeJ_G0030924.1 mouse_genomes_project 6 124147697 124153825 + Mfap5 protein_coding retained_intron MGP_C3HHeJ_T0004867.1 MGP_C3HHeJ_G0004172.1 mouse_genomes_project 6 37803468 37803908 - Gm26833 antisense antisense MGP_C3HHeJ_T0102073.1 MGP_C3HHeJ_G0040038.1 mouse_genomes_project 6 38998110 38998752 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0080493.1 MGP_C3HHeJ_G0031167.1 mouse_genomes_project 6 145642118 145657427 + MGP_C3HHeJ_P0080493 Golt1b protein_coding protein_coding MGP_C3HHeJ_T0080494.1 MGP_C3HHeJ_G0031167.1 mouse_genomes_project 6 145642150 145655280 + Golt1b protein_coding processed_transcript MGP_C3HHeJ_T0015459.1 MGP_C3HHeJ_G0013563.1 mouse_genomes_project 6 143248087 143248593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076029.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14651262 14671078 + Capza2 protein_coding processed_transcript MGP_C3HHeJ_T0076030.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14652011 14681654 + MGP_C3HHeJ_P0076030 Capza2 protein_coding protein_coding MGP_C3HHeJ_T0076031.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14652063 14674237 + Capza2 protein_coding retained_intron MGP_C3HHeJ_T0076032.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14652070 14671028 + Capza2 protein_coding processed_transcript MGP_C3HHeJ_T0076033.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14652138 14680272 + MGP_C3HHeJ_P0076033 Capza2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076034.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14652141 14675438 + MGP_C3HHeJ_P0076034 Capza2 protein_coding protein_coding MGP_C3HHeJ_T0076035.1 MGP_C3HHeJ_G0030167.1 mouse_genomes_project 6 14675233 14680368 + Capza2 protein_coding retained_intron MGP_C3HHeJ_T0015056.1 MGP_C3HHeJ_G0013160.1 mouse_genomes_project 6 4451992 4452629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102117.1 MGP_C3HHeJ_G0040082.1 mouse_genomes_project 6 126454874 126463518 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100763.1 MGP_C3HHeJ_G0038957.1 mouse_genomes_project 6 59032910 59033039 - Gm22723 snoRNA snoRNA MGP_C3HHeJ_T0015140.1 MGP_C3HHeJ_G0013244.1 mouse_genomes_project 6 42959942 42960839 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015105.1 MGP_C3HHeJ_G0013209.1 mouse_genomes_project 6 25792570 25793822 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079908.1 MGP_C3HHeJ_G0031007.1 mouse_genomes_project 6 128854164 128881593 - MGP_C3HHeJ_P0079908 Ndufa9 protein_coding protein_coding MGP_C3HHeJ_T0079909.1 MGP_C3HHeJ_G0031007.1 mouse_genomes_project 6 128854439 128881593 - MGP_C3HHeJ_P0079909 Ndufa9 protein_coding protein_coding MGP_C3HHeJ_T0079910.1 MGP_C3HHeJ_G0031007.1 mouse_genomes_project 6 128876209 128881604 - Ndufa9 protein_coding retained_intron MGP_C3HHeJ_T0080265.1 MGP_C3HHeJ_G0031123.1 mouse_genomes_project 6 138313046 138335388 + MGP_C3HHeJ_P0080265 Emp1 protein_coding protein_coding MGP_C3HHeJ_T0080266.1 MGP_C3HHeJ_G0031123.1 mouse_genomes_project 6 138313446 138335388 + MGP_C3HHeJ_P0080266 Emp1 protein_coding protein_coding MGP_C3HHeJ_T0080267.1 MGP_C3HHeJ_G0031123.1 mouse_genomes_project 6 138313446 138335388 + MGP_C3HHeJ_P0080267 Emp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080268.1 MGP_C3HHeJ_G0031123.1 mouse_genomes_project 6 138313523 138332588 + Emp1 protein_coding retained_intron MGP_C3HHeJ_T0080269.1 MGP_C3HHeJ_G0031123.1 mouse_genomes_project 6 138313583 138316176 + Emp1 protein_coding retained_intron MGP_C3HHeJ_T0080270.1 MGP_C3HHeJ_G0031123.1 mouse_genomes_project 6 138318029 138335388 + MGP_C3HHeJ_P0080270 Emp1 protein_coding protein_coding MGP_C3HHeJ_T0078048.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70171469 70194777 - MGP_C3HHeJ_P0078048 Thumpd3 protein_coding protein_coding MGP_C3HHeJ_T0078049.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70171846 70174317 - Thumpd3 protein_coding retained_intron MGP_C3HHeJ_T0078050.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70178721 70181787 - Thumpd3 protein_coding retained_intron MGP_C3HHeJ_T0078051.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70178945 70194687 - Thumpd3 protein_coding retained_intron MGP_C3HHeJ_T0078052.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70183801 70194700 - MGP_C3HHeJ_P0078052 Thumpd3 protein_coding protein_coding MGP_C3HHeJ_T0078053.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70188488 70193587 - Thumpd3 protein_coding processed_transcript MGP_C3HHeJ_T0078054.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70191459 70194675 - Thumpd3 protein_coding retained_intron MGP_C3HHeJ_T0078055.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70192983 70194645 - Thumpd3 protein_coding retained_intron MGP_C3HHeJ_T0078056.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70193297 70194247 - MGP_C3HHeJ_P0078056 Thumpd3 protein_coding protein_coding MGP_C3HHeJ_T0078057.1 MGP_C3HHeJ_G0030617.1 mouse_genomes_project 6 70193323 70194544 - MGP_C3HHeJ_P0078057 Thumpd3 protein_coding protein_coding MGP_C3HHeJ_T0001908.1 MGP_C3HHeJ_G0001830.1 mouse_genomes_project 6 28730201 28732270 - TEC TEC MGP_C3HHeJ_T0100786.1 MGP_C3HHeJ_G0038980.1 mouse_genomes_project 6 116684439 116684584 + Gm25436 snoRNA snoRNA MGP_C3HHeJ_T0015380.1 MGP_C3HHeJ_G0013484.1 mouse_genomes_project 6 121078727 121078892 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077555.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63082187 63104270 - MGP_C3HHeJ_P0077555 Rad52 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077556.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63082192 63104197 - MGP_C3HHeJ_P0077556 Rad52 protein_coding protein_coding MGP_C3HHeJ_T0077557.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63082192 63104270 - MGP_C3HHeJ_P0077557 Rad52 protein_coding protein_coding MGP_C3HHeJ_T0077558.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63083686 63087194 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077559.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63083960 63104245 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077560.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63084462 63104234 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077561.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63086107 63104239 - Rad52 protein_coding processed_transcript MGP_C3HHeJ_T0077562.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63086107 63104239 - Rad52 protein_coding processed_transcript MGP_C3HHeJ_T0077563.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63086344 63090364 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077564.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63086489 63091665 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077565.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63090280 63104275 - Rad52 protein_coding processed_transcript MGP_C3HHeJ_T0077566.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63091397 63092378 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077567.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63091891 63104268 - Rad52 protein_coding retained_intron MGP_C3HHeJ_T0077568.1 MGP_C3HHeJ_G0030532.1 mouse_genomes_project 6 63092518 63104268 - Rad52 protein_coding processed_transcript MGP_C3HHeJ_T0002052.1 MGP_C3HHeJ_G0001973.1 mouse_genomes_project 6 100368892 100371110 - TEC TEC MGP_C3HHeJ_T0011539.1 MGP_C3HHeJ_G0009672.1 mouse_genomes_project 6 28314673 28314903 + Gm27522 misc_RNA misc_RNA MGP_C3HHeJ_T0000270.1 MGP_C3HHeJ_G0000220.1 mouse_genomes_project 6 115002349 115002744 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0002051.1 MGP_C3HHeJ_G0001972.1 mouse_genomes_project 6 98517751 98520052 - TEC TEC MGP_C3HHeJ_T0076084.1 MGP_C3HHeJ_G0030175.1 mouse_genomes_project 6 18392051 18938438 + MGP_C3HHeJ_P0076084 Kcnd2 protein_coding protein_coding MGP_C3HHeJ_T0011572.1 MGP_C3HHeJ_G0009705.1 mouse_genomes_project 6 100649013 100649336 + Gm24990 misc_RNA misc_RNA MGP_C3HHeJ_T0078455.1 MGP_C3HHeJ_G0030708.1 mouse_genomes_project 6 94146332 94147430 + MGP_C3HHeJ_P0078455 Vmn1r42 protein_coding protein_coding MGP_C3HHeJ_T0000187.1 MGP_C3HHeJ_G0000142.1 mouse_genomes_project 6 116671971 116826399 - MGP_C3HHeJ_P0000187 Igkv1-110 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002620.1 MGP_C3HHeJ_G0002513.1 mouse_genomes_project 6 39152227 39152722 + MGP_C3HHeJ_P0002620 Trbv17 TR_V_gene TR_V_gene MGP_C3HHeJ_T0078443.1 MGP_C3HHeJ_G0030700.1 mouse_genomes_project 6 93844279 93946414 - MGP_C3HHeJ_P0078443 Vmn1r47 protein_coding protein_coding MGP_C3HHeJ_T0002073.1 MGP_C3HHeJ_G0001994.1 mouse_genomes_project 6 106872471 106877303 + TEC TEC MGP_C3HHeJ_T0078398.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93119727 93272923 + MGP_C3HHeJ_P0078398 Iqsec1 protein_coding protein_coding MGP_C3HHeJ_T0078399.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93165729 93240957 + MGP_C3HHeJ_P0078399 Iqsec1 protein_coding protein_coding MGP_C3HHeJ_T0078400.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93172297 93236881 + Iqsec1 protein_coding processed_transcript MGP_C3HHeJ_T0078401.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93193892 93240827 + Iqsec1 protein_coding processed_transcript MGP_C3HHeJ_T0078402.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93215090 93276389 + MGP_C3HHeJ_P0078402 Iqsec1 protein_coding protein_coding MGP_C3HHeJ_T0078403.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93236783 93241671 + Iqsec1 protein_coding processed_transcript MGP_C3HHeJ_T0078404.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93263903 93269919 + Iqsec1 protein_coding processed_transcript MGP_C3HHeJ_T0078405.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93264555 93269735 + Iqsec1 protein_coding processed_transcript MGP_C3HHeJ_T0078406.1 MGP_C3HHeJ_G0030687.1 mouse_genomes_project 6 93270258 93272923 + Iqsec1 protein_coding retained_intron MGP_C3HHeJ_T0015121.1 MGP_C3HHeJ_G0013225.1 mouse_genomes_project 6 36231009 36231432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000160.1 MGP_C3HHeJ_G0000122.1 mouse_genomes_project 6 115927762 115928228 - MGP_C3HHeJ_P0000160 Igkv13-84 IG_V_gene IG_V_gene MGP_C3HHeJ_T0001880.1 MGP_C3HHeJ_G0001802.1 mouse_genomes_project 6 2064716 2066542 + TEC TEC MGP_C3HHeJ_T0000147.1 MGP_C3HHeJ_G0000113.1 mouse_genomes_project 6 114713396 114713909 + MGP_C3HHeJ_P0000147 Igkv18-36 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000148.1 MGP_C3HHeJ_G0000113.1 mouse_genomes_project 6 114713396 114713909 + MGP_C3HHeJ_P0000148 Igkv18-36 IG_V_gene IG_V_gene MGP_C3HHeJ_T0008525.1 MGP_C3HHeJ_G0006884.1 mouse_genomes_project 6 52425436 52427613 + Gm16499 lincRNA lincRNA MGP_C3HHeJ_T0008526.1 MGP_C3HHeJ_G0006884.1 mouse_genomes_project 6 52425437 52425503 + Gm16499 lincRNA lincRNA MGP_C3HHeJ_T0079914.1 MGP_C3HHeJ_G0031009.1 mouse_genomes_project 6 128909937 128953338 - MGP_C3HHeJ_P0079914 Dyrk4 protein_coding protein_coding MGP_C3HHeJ_T0079915.1 MGP_C3HHeJ_G0031009.1 mouse_genomes_project 6 128910110 128919302 - MGP_C3HHeJ_P0079915 Dyrk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079916.1 MGP_C3HHeJ_G0031009.1 mouse_genomes_project 6 128910116 128938487 - Dyrk4 protein_coding processed_transcript MGP_C3HHeJ_T0100751.1 MGP_C3HHeJ_G0038945.1 mouse_genomes_project 6 42028579 42028710 + Gm22939 snoRNA snoRNA MGP_C3HHeJ_T0015440.1 MGP_C3HHeJ_G0013544.1 mouse_genomes_project 6 135210280 135210713 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077026.1 MGP_C3HHeJ_G0030395.1 mouse_genomes_project 6 46985246 47003727 + Gm44965 protein_coding processed_transcript MGP_C3HHeJ_T0077027.1 MGP_C3HHeJ_G0030395.1 mouse_genomes_project 6 46985249 47009773 + MGP_C3HHeJ_P0077027 Gm44965 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015077.1 MGP_C3HHeJ_G0013181.1 mouse_genomes_project 6 13241047 13241659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077181.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50395651 50556747 - MGP_C3HHeJ_P0077181 Skap2 protein_coding protein_coding MGP_C3HHeJ_T0077182.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50397333 50410729 - Skap2 protein_coding processed_transcript MGP_C3HHeJ_T0077183.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50397395 50556713 - MGP_C3HHeJ_P0077183 Skap2 protein_coding protein_coding MGP_C3HHeJ_T0077184.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50398285 50449088 - MGP_C3HHeJ_P0077184 Skap2 protein_coding protein_coding MGP_C3HHeJ_T0077185.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50409240 50411470 - Skap2 protein_coding retained_intron MGP_C3HHeJ_T0077186.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50413271 50473773 - Skap2 protein_coding processed_transcript MGP_C3HHeJ_T0077187.1 MGP_C3HHeJ_G0030432.1 mouse_genomes_project 6 50534750 50556730 - Skap2 protein_coding retained_intron MGP_C3HHeJ_T0077385.1 MGP_C3HHeJ_G0030482.1 mouse_genomes_project 6 55771781 55772994 + MGP_C3HHeJ_P0077385 protein_coding protein_coding MGP_C3HHeJ_T0079134.1 MGP_C3HHeJ_G0030838.1 mouse_genomes_project 6 105919971 105922577 - MGP_C3HHeJ_P0079134 Reg3b protein_coding protein_coding MGP_C3HHeJ_T0079135.1 MGP_C3HHeJ_G0030838.1 mouse_genomes_project 6 105920019 105920907 - Reg3b protein_coding retained_intron MGP_C3HHeJ_T0079136.1 MGP_C3HHeJ_G0030838.1 mouse_genomes_project 6 105920529 105922540 - MGP_C3HHeJ_P0079136 Reg3b protein_coding protein_coding MGP_C3HHeJ_T0079137.1 MGP_C3HHeJ_G0030838.1 mouse_genomes_project 6 105920539 105922781 - MGP_C3HHeJ_P0079137 Reg3b protein_coding protein_coding MGP_C3HHeJ_T0002112.1 MGP_C3HHeJ_G0002033.1 mouse_genomes_project 6 131291082 131291279 - TEC TEC MGP_C3HHeJ_T0002072.1 MGP_C3HHeJ_G0001993.1 mouse_genomes_project 6 106830550 106833607 + TEC TEC MGP_C3HHeJ_T0015407.1 MGP_C3HHeJ_G0013511.1 mouse_genomes_project 6 128350925 128351338 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000165.1 MGP_C3HHeJ_G0000126.1 mouse_genomes_project 6 116010647 116011414 + MGP_C3HHeJ_P0000165 Igkv1-88 IG_V_gene IG_V_gene MGP_C3HHeJ_T0079343.1 MGP_C3HHeJ_G0030879.1 mouse_genomes_project 6 113420336 113436561 + MGP_C3HHeJ_P0079343 Thnsl2 protein_coding protein_coding MGP_C3HHeJ_T0079344.1 MGP_C3HHeJ_G0030879.1 mouse_genomes_project 6 113420428 113436334 + MGP_C3HHeJ_P0079344 Thnsl2 protein_coding protein_coding MGP_C3HHeJ_T0079345.1 MGP_C3HHeJ_G0030879.1 mouse_genomes_project 6 113420444 113432946 + Thnsl2 protein_coding processed_transcript MGP_C3HHeJ_T0079346.1 MGP_C3HHeJ_G0030879.1 mouse_genomes_project 6 113432739 113436076 + MGP_C3HHeJ_P0079346 Thnsl2 protein_coding protein_coding MGP_C3HHeJ_T0077417.1 MGP_C3HHeJ_G0030501.1 mouse_genomes_project 6 56671865 56672900 - MGP_C3HHeJ_P0077417 Vmn1r21 protein_coding protein_coding MGP_C3HHeJ_T0077418.1 MGP_C3HHeJ_G0030501.1 mouse_genomes_project 6 56672536 56678754 - MGP_C3HHeJ_P0077418 Vmn1r21 protein_coding protein_coding MGP_C3HHeJ_T0077419.1 MGP_C3HHeJ_G0030501.1 mouse_genomes_project 6 56672543 56678756 - MGP_C3HHeJ_P0077419 Vmn1r21 protein_coding protein_coding MGP_C3HHeJ_T0002007.1 MGP_C3HHeJ_G0001928.1 mouse_genomes_project 6 90764179 90765684 - TEC TEC MGP_C3HHeJ_T0015112.1 MGP_C3HHeJ_G0013216.1 mouse_genomes_project 6 31046158 31049801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008586.1 MGP_C3HHeJ_G0006935.1 mouse_genomes_project 6 94701059 94717867 + Gm44205 lincRNA lincRNA MGP_C3HHeJ_T0008587.1 MGP_C3HHeJ_G0006935.1 mouse_genomes_project 6 94701090 94702134 + Gm44205 lincRNA lincRNA MGP_C3HHeJ_T0008588.1 MGP_C3HHeJ_G0006935.1 mouse_genomes_project 6 94714173 94717861 + Gm44205 lincRNA lincRNA MGP_C3HHeJ_T0008500.1 MGP_C3HHeJ_G0006866.1 mouse_genomes_project 6 47156129 47157161 + 4833403J16Rik lincRNA lincRNA MGP_C3HHeJ_T0000293.1 MGP_C3HHeJ_G0000243.1 mouse_genomes_project 6 116600157 116600812 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0078784.1 MGP_C3HHeJ_G0030765.1 mouse_genomes_project 6 98231896 98237429 + MGP_C3HHeJ_P0078784 Nat8f1 protein_coding protein_coding MGP_C3HHeJ_T0078785.1 MGP_C3HHeJ_G0030765.1 mouse_genomes_project 6 98231917 98237421 + Nat8f1 protein_coding processed_transcript MGP_C3HHeJ_T0078787.1 MGP_C3HHeJ_G0030765.1 mouse_genomes_project 6 98231979 98236953 + MGP_C3HHeJ_P0078787 Nat8f1 protein_coding protein_coding MGP_C3HHeJ_T0008413.1 MGP_C3HHeJ_G0006809.1 mouse_genomes_project 6 3308488 3335246 - Gm20617 lincRNA lincRNA MGP_C3HHeJ_T0008414.1 MGP_C3HHeJ_G0006809.1 mouse_genomes_project 6 3308892 3335411 - Gm20617 lincRNA lincRNA MGP_C3HHeJ_T0008567.1 MGP_C3HHeJ_G0006920.1 mouse_genomes_project 6 83070755 83077653 - 1700049E22Rik lincRNA lincRNA MGP_C3HHeJ_T0076611.1 MGP_C3HHeJ_G0030275.1 mouse_genomes_project 6 35798392 35863808 - MGP_C3HHeJ_P0076611 Svopl protein_coding protein_coding MGP_C3HHeJ_T0076612.1 MGP_C3HHeJ_G0030275.1 mouse_genomes_project 6 35799165 35847161 - MGP_C3HHeJ_P0076612 Svopl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076613.1 MGP_C3HHeJ_G0030275.1 mouse_genomes_project 6 35830092 35838525 - Svopl protein_coding retained_intron MGP_C3HHeJ_T0076614.1 MGP_C3HHeJ_G0030275.1 mouse_genomes_project 6 35830398 35833904 - Svopl protein_coding retained_intron MGP_C3HHeJ_T0076615.1 MGP_C3HHeJ_G0030275.1 mouse_genomes_project 6 35830551 35863808 - Svopl protein_coding retained_intron MGP_C3HHeJ_T0076312.1 MGP_C3HHeJ_G0030225.1 mouse_genomes_project 6 27220462 27244960 + MGP_C3HHeJ_P0076312 Tspan33 protein_coding protein_coding MGP_C3HHeJ_T0076313.1 MGP_C3HHeJ_G0030225.1 mouse_genomes_project 6 27220474 27244958 + MGP_C3HHeJ_P0076313 Tspan33 protein_coding protein_coding MGP_C3HHeJ_T0076314.1 MGP_C3HHeJ_G0030225.1 mouse_genomes_project 6 27234446 27241245 + Tspan33 protein_coding retained_intron MGP_C3HHeJ_T0015388.1 MGP_C3HHeJ_G0013492.1 mouse_genomes_project 6 123497777 123497909 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002062.1 MGP_C3HHeJ_G0001983.1 mouse_genomes_project 6 104020494 104022156 - TEC TEC MGP_C3HHeJ_T0100805.1 MGP_C3HHeJ_G0038999.1 mouse_genomes_project 6 146754920 146755049 - Gm23272 snoRNA snoRNA MGP_C3HHeJ_T0008445.1 MGP_C3HHeJ_G0006831.1 mouse_genomes_project 6 27856026 27885622 + 1700095J07Rik lincRNA lincRNA MGP_C3HHeJ_T0008446.1 MGP_C3HHeJ_G0006831.1 mouse_genomes_project 6 27856042 27859190 + 1700095J07Rik lincRNA lincRNA MGP_C3HHeJ_T0076189.1 MGP_C3HHeJ_G0030202.1 mouse_genomes_project 6 25662675 25684623 - MGP_C3HHeJ_P0076189 Zfp800 protein_coding protein_coding MGP_C3HHeJ_T0076190.1 MGP_C3HHeJ_G0030202.1 mouse_genomes_project 6 25662988 25831275 - MGP_C3HHeJ_P0076190 Zfp800 protein_coding protein_coding MGP_C3HHeJ_T0076191.1 MGP_C3HHeJ_G0030202.1 mouse_genomes_project 6 25664197 25684635 - MGP_C3HHeJ_P0076191 Zfp800 protein_coding protein_coding MGP_C3HHeJ_T0076192.1 MGP_C3HHeJ_G0030202.1 mouse_genomes_project 6 25666270 25684626 - MGP_C3HHeJ_P0076192 Zfp800 protein_coding protein_coding MGP_C3HHeJ_T0076193.1 MGP_C3HHeJ_G0030202.1 mouse_genomes_project 6 25667197 25684644 - MGP_C3HHeJ_P0076193 Zfp800 protein_coding protein_coding MGP_C3HHeJ_T0078258.1 MGP_C3HHeJ_G0030660.1 mouse_genomes_project 6 88013406 88082484 + protein_coding retained_intron MGP_C3HHeJ_T0078259.1 MGP_C3HHeJ_G0030660.1 mouse_genomes_project 6 88013431 88265130 + MGP_C3HHeJ_P0078259 protein_coding protein_coding MGP_C3HHeJ_T0078260.1 MGP_C3HHeJ_G0030660.1 mouse_genomes_project 6 88079766 88143428 + MGP_C3HHeJ_P0078260 protein_coding protein_coding MGP_C3HHeJ_T0078261.1 MGP_C3HHeJ_G0030660.1 mouse_genomes_project 6 88093204 88171621 + protein_coding processed_transcript MGP_C3HHeJ_T0075952.1 MGP_C3HHeJ_G0030154.1 mouse_genomes_project 6 10103266 10176172 - MGP_C3HHeJ_P0075952 protein_coding protein_coding MGP_C3HHeJ_T0075953.1 MGP_C3HHeJ_G0030154.1 mouse_genomes_project 6 10125167 10127999 - protein_coding retained_intron MGP_C3HHeJ_T0075954.1 MGP_C3HHeJ_G0030154.1 mouse_genomes_project 6 10136524 10176172 - MGP_C3HHeJ_P0075954 protein_coding protein_coding MGP_C3HHeJ_T0075955.1 MGP_C3HHeJ_G0030154.1 mouse_genomes_project 6 10146941 10157859 - protein_coding retained_intron MGP_C3HHeJ_T0080180.1 MGP_C3HHeJ_G0031103.1 mouse_genomes_project 6 135889582 135894251 + MGP_C3HHeJ_P0080180 Smim10l1 protein_coding protein_coding MGP_C3HHeJ_T0080181.1 MGP_C3HHeJ_G0031103.1 mouse_genomes_project 6 135889938 135897405 + MGP_C3HHeJ_P0080181 Smim10l1 protein_coding protein_coding MGP_C3HHeJ_T0080182.1 MGP_C3HHeJ_G0031103.1 mouse_genomes_project 6 135889972 135897407 + MGP_C3HHeJ_P0080182 Smim10l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002027.1 MGP_C3HHeJ_G0001948.1 mouse_genomes_project 6 95503737 95504732 - TEC TEC MGP_C3HHeJ_T0002454.1 MGP_C3HHeJ_G0002371.1 mouse_genomes_project 6 39568884 39570750 + MGP_C3HHeJ_P0002454 Trbc1 TR_C_gene TR_C_gene MGP_C3HHeJ_T0015063.1 MGP_C3HHeJ_G0013167.1 mouse_genomes_project 6 7231421 7232046 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015080.1 MGP_C3HHeJ_G0013184.1 mouse_genomes_project 6 15189292 15190221 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002065.1 MGP_C3HHeJ_G0001986.1 mouse_genomes_project 6 104116972 104119005 - TEC TEC MGP_C3HHeJ_T0099534.1 MGP_C3HHeJ_G0037728.1 mouse_genomes_project 6 90021072 90021178 - Gm23035 snRNA snRNA MGP_C3HHeJ_T0002532.1 MGP_C3HHeJ_G0002442.1 mouse_genomes_project 6 39574079 39574128 + MGP_C3HHeJ_P0002532 Trbj2-3 TR_J_gene TR_J_gene MGP_C3HHeJ_T0001971.1 MGP_C3HHeJ_G0001892.1 mouse_genomes_project 6 67216449 67217288 + TEC TEC MGP_C3HHeJ_T0079385.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118042334 118158752 - MGP_C3HHeJ_P0079385 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079386.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118044598 118158709 - MGP_C3HHeJ_P0079386 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079387.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118045395 118158715 - MGP_C3HHeJ_P0079387 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079388.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118045411 118158718 - MGP_C3HHeJ_P0079388 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079389.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118045538 118158600 - MGP_C3HHeJ_P0079389 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079390.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118045755 118158726 - MGP_C3HHeJ_P0079390 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079391.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118045783 118158712 - MGP_C3HHeJ_P0079391 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079392.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118045836 118158693 - MGP_C3HHeJ_P0079392 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0079393.1 MGP_C3HHeJ_G0030889.1 mouse_genomes_project 6 118046117 118158258 - MGP_C3HHeJ_P0079393 Gng12 protein_coding protein_coding MGP_C3HHeJ_T0015241.1 MGP_C3HHeJ_G0013345.1 mouse_genomes_project 6 79514476 79514856 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078436.1 MGP_C3HHeJ_G0030694.1 mouse_genomes_project 6 93610455 93627515 + MGP_C3HHeJ_P0078436 Chst13 protein_coding protein_coding MGP_C3HHeJ_T0078234.1 MGP_C3HHeJ_G0030654.1 mouse_genomes_project 6 86520608 86542750 + MGP_C3HHeJ_P0078234 Uba3 protein_coding protein_coding MGP_C3HHeJ_T0078235.1 MGP_C3HHeJ_G0030654.1 mouse_genomes_project 6 86520687 86522165 + Uba3 protein_coding retained_intron MGP_C3HHeJ_T0078236.1 MGP_C3HHeJ_G0030654.1 mouse_genomes_project 6 86520690 86523242 + Uba3 protein_coding retained_intron MGP_C3HHeJ_T0078237.1 MGP_C3HHeJ_G0030654.1 mouse_genomes_project 6 86520695 86543087 + MGP_C3HHeJ_P0078237 Uba3 protein_coding protein_coding MGP_C3HHeJ_T0078238.1 MGP_C3HHeJ_G0030654.1 mouse_genomes_project 6 86520696 86542939 + MGP_C3HHeJ_P0078238 Uba3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078239.1 MGP_C3HHeJ_G0030654.1 mouse_genomes_project 6 86529273 86531453 + Uba3 protein_coding retained_intron MGP_C3HHeJ_T0079978.1 MGP_C3HHeJ_G0031023.1 mouse_genomes_project 6 130455244 130461750 - MGP_C3HHeJ_P0079978 protein_coding protein_coding MGP_C3HHeJ_T0079979.1 MGP_C3HHeJ_G0031023.1 mouse_genomes_project 6 130455604 130461806 - MGP_C3HHeJ_P0079979 protein_coding protein_coding MGP_C3HHeJ_T0079980.1 MGP_C3HHeJ_G0031023.1 mouse_genomes_project 6 130455609 130461806 - MGP_C3HHeJ_P0079980 protein_coding protein_coding MGP_C3HHeJ_T0079981.1 MGP_C3HHeJ_G0031023.1 mouse_genomes_project 6 130456215 130461516 - MGP_C3HHeJ_P0079981 protein_coding protein_coding MGP_C3HHeJ_T0079982.1 MGP_C3HHeJ_G0031023.1 mouse_genomes_project 6 130457470 130461633 - MGP_C3HHeJ_P0079982 protein_coding protein_coding MGP_C3HHeJ_T0079983.1 MGP_C3HHeJ_G0031023.1 mouse_genomes_project 6 130460817 130461849 - protein_coding processed_transcript MGP_C3HHeJ_T0005021.1 MGP_C3HHeJ_G0004278.1 mouse_genomes_project 6 130454502 130457076 + Gm26770 antisense antisense MGP_C3HHeJ_T0008631.1 MGP_C3HHeJ_G0006969.1 mouse_genomes_project 6 113215605 113216255 + Gm44110 lincRNA lincRNA MGP_C3HHeJ_T0076754.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38422121 38435444 + MGP_C3HHeJ_P0076754 Ssbp1 protein_coding protein_coding MGP_C3HHeJ_T0076755.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38422184 38429369 + MGP_C3HHeJ_P0076755 Ssbp1 protein_coding protein_coding MGP_C3HHeJ_T0076756.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38422222 38425059 + Ssbp1 protein_coding retained_intron MGP_C3HHeJ_T0076757.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38422237 38431739 + MGP_C3HHeJ_P0076757 Ssbp1 protein_coding protein_coding MGP_C3HHeJ_T0076758.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38422244 38431736 + MGP_C3HHeJ_P0076758 Ssbp1 protein_coding protein_coding MGP_C3HHeJ_T0076759.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38422295 38427281 + MGP_C3HHeJ_P0076759 Ssbp1 protein_coding protein_coding MGP_C3HHeJ_T0076760.1 MGP_C3HHeJ_G0030304.1 mouse_genomes_project 6 38427248 38428232 + Ssbp1 protein_coding retained_intron MGP_C3HHeJ_T0102111.1 MGP_C3HHeJ_G0040076.1 mouse_genomes_project 6 118304279 118305179 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078916.1 MGP_C3HHeJ_G0030791.1 mouse_genomes_project 6 100466939 100473860 + MGP_C3HHeJ_P0078916 Tex261 protein_coding protein_coding MGP_C3HHeJ_T0078917.1 MGP_C3HHeJ_G0030791.1 mouse_genomes_project 6 100466962 100472339 + Tex261 protein_coding retained_intron MGP_C3HHeJ_T0078918.1 MGP_C3HHeJ_G0030791.1 mouse_genomes_project 6 100466994 100469148 + Tex261 protein_coding retained_intron MGP_C3HHeJ_T0078919.1 MGP_C3HHeJ_G0030791.1 mouse_genomes_project 6 100470279 100471568 + Tex261 protein_coding retained_intron MGP_C3HHeJ_T0002116.1 MGP_C3HHeJ_G0002037.1 mouse_genomes_project 6 135642804 135643117 + TEC TEC MGP_C3HHeJ_T0000269.1 MGP_C3HHeJ_G0000219.1 mouse_genomes_project 6 114960469 114960947 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0079315.1 MGP_C3HHeJ_G0030871.1 mouse_genomes_project 6 112947109 112949337 - Chmp3 protein_coding retained_intron MGP_C3HHeJ_T0079316.1 MGP_C3HHeJ_G0030871.1 mouse_genomes_project 6 112947136 112984849 - MGP_C3HHeJ_P0079316 Chmp3 protein_coding protein_coding MGP_C3HHeJ_T0079317.1 MGP_C3HHeJ_G0030871.1 mouse_genomes_project 6 112949133 112984909 - MGP_C3HHeJ_P0079317 Chmp3 protein_coding protein_coding MGP_C3HHeJ_T0079318.1 MGP_C3HHeJ_G0030871.1 mouse_genomes_project 6 112952802 112984485 - Chmp3 protein_coding processed_transcript MGP_C3HHeJ_T0079319.1 MGP_C3HHeJ_G0030871.1 mouse_genomes_project 6 112966373 112984909 - MGP_C3HHeJ_P0079319 Chmp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079320.1 MGP_C3HHeJ_G0030871.1 mouse_genomes_project 6 112966392 112984986 - Chmp3 protein_coding processed_transcript MGP_C3HHeJ_T0100784.1 MGP_C3HHeJ_G0038978.1 mouse_genomes_project 6 113724233 113724369 - Gm23346 snoRNA snoRNA MGP_C3HHeJ_T0002056.1 MGP_C3HHeJ_G0001977.1 mouse_genomes_project 6 101270336 101271803 - TEC TEC MGP_C3HHeJ_T0079331.1 MGP_C3HHeJ_G0030875.1 mouse_genomes_project 6 113217412 113233081 - MGP_C3HHeJ_P0079331 Cd8b1 protein_coding protein_coding MGP_C3HHeJ_T0077461.1 MGP_C3HHeJ_G0030514.1 mouse_genomes_project 6 58133621 58136785 + MGP_C3HHeJ_P0077461 Tigd2 protein_coding protein_coding MGP_C3HHeJ_T0008694.1 MGP_C3HHeJ_G0007016.1 mouse_genomes_project 6 150589712 150620104 + E330012B07Rik lincRNA lincRNA MGP_C3HHeJ_T0008695.1 MGP_C3HHeJ_G0007016.1 mouse_genomes_project 6 150589730 150614011 + E330012B07Rik lincRNA lincRNA MGP_C3HHeJ_T0008469.1 MGP_C3HHeJ_G0006846.1 mouse_genomes_project 6 29438180 29568949 + Gm13849 lincRNA lincRNA MGP_C3HHeJ_T0078354.1 MGP_C3HHeJ_G0030679.1 mouse_genomes_project 6 92380689 92387382 - MGP_C3HHeJ_P0078354 Lsm3 protein_coding protein_coding MGP_C3HHeJ_T0078355.1 MGP_C3HHeJ_G0030679.1 mouse_genomes_project 6 92380694 92387262 - MGP_C3HHeJ_P0078355 Lsm3 protein_coding protein_coding MGP_C3HHeJ_T0078356.1 MGP_C3HHeJ_G0030679.1 mouse_genomes_project 6 92383477 92387353 - Lsm3 protein_coding retained_intron MGP_C3HHeJ_T0078357.1 MGP_C3HHeJ_G0030679.1 mouse_genomes_project 6 92385301 92387333 - Lsm3 protein_coding retained_intron MGP_C3HHeJ_T0078358.1 MGP_C3HHeJ_G0030679.1 mouse_genomes_project 6 92385790 92387263 - Lsm3 protein_coding retained_intron MGP_C3HHeJ_T0101256.1 MGP_C3HHeJ_G0039373.1 mouse_genomes_project 6 124571596 124574692 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101257.1 MGP_C3HHeJ_G0039373.1 mouse_genomes_project 6 124572011 124572281 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0076143.1 MGP_C3HHeJ_G0030187.1 mouse_genomes_project 6 21273334 21274234 - MGP_C3HHeJ_P0076143 Tas2r118 protein_coding protein_coding MGP_C3HHeJ_T0001890.1 MGP_C3HHeJ_G0001812.1 mouse_genomes_project 6 14768269 14769648 - TEC TEC MGP_C3HHeJ_T0080092.1 MGP_C3HHeJ_G0031055.1 mouse_genomes_project 6 131862353 131869168 + MGP_C3HHeJ_P0080092 Klrd1 protein_coding protein_coding MGP_C3HHeJ_T0080093.1 MGP_C3HHeJ_G0031055.1 mouse_genomes_project 6 131862353 131868866 + MGP_C3HHeJ_P0080093 Klrd1 protein_coding protein_coding MGP_C3HHeJ_T0080094.1 MGP_C3HHeJ_G0031055.1 mouse_genomes_project 6 131862381 131869163 + MGP_C3HHeJ_P0080094 Klrd1 protein_coding protein_coding MGP_C3HHeJ_T0080095.1 MGP_C3HHeJ_G0031055.1 mouse_genomes_project 6 131862396 131869010 + MGP_C3HHeJ_P0080095 Klrd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080096.1 MGP_C3HHeJ_G0031055.1 mouse_genomes_project 6 131865801 131868850 + MGP_C3HHeJ_P0080096 Klrd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080097.1 MGP_C3HHeJ_G0031055.1 mouse_genomes_project 6 131866854 131868849 + Klrd1 protein_coding retained_intron MGP_C3HHeJ_T0002068.1 MGP_C3HHeJ_G0001989.1 mouse_genomes_project 6 106549876 106553914 + TEC TEC MGP_C3HHeJ_T0001964.1 MGP_C3HHeJ_G0001886.1 mouse_genomes_project 6 62374726 62375198 + TEC TEC MGP_C3HHeJ_T0079572.1 MGP_C3HHeJ_G0030933.1 mouse_genomes_project 6 124546342 124547794 + Necap1 protein_coding processed_transcript MGP_C3HHeJ_T0079573.1 MGP_C3HHeJ_G0030933.1 mouse_genomes_project 6 124546362 124560842 + MGP_C3HHeJ_P0079573 Necap1 protein_coding protein_coding MGP_C3HHeJ_T0079574.1 MGP_C3HHeJ_G0030933.1 mouse_genomes_project 6 124546364 124554243 + Necap1 protein_coding retained_intron MGP_C3HHeJ_T0079575.1 MGP_C3HHeJ_G0030933.1 mouse_genomes_project 6 124546374 124552958 + Necap1 protein_coding retained_intron MGP_C3HHeJ_T0008596.1 MGP_C3HHeJ_G0006940.1 mouse_genomes_project 6 95850257 95852542 + Gm44246 lincRNA lincRNA MGP_C3HHeJ_T0002122.1 MGP_C3HHeJ_G0002043.1 mouse_genomes_project 6 138258667 138258923 - TEC TEC MGP_C3HHeJ_T0079515.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937375 123956679 - MGP_C3HHeJ_P0079515 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079516.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937375 123956679 - MGP_C3HHeJ_P0079516 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079517.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937382 123959316 - MGP_C3HHeJ_P0079517 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079518.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937394 123959316 - MGP_C3HHeJ_P0079518 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079519.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937394 123958530 - MGP_C3HHeJ_P0079519 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079520.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937494 123959312 - MGP_C3HHeJ_P0079520 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079521.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937947 123959279 - Phc1 protein_coding retained_intron MGP_C3HHeJ_T0079522.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937947 123959279 - MGP_C3HHeJ_P0079522 Phc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079523.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123937948 123960097 - MGP_C3HHeJ_P0079523 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079524.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123945196 123956583 - MGP_C3HHeJ_P0079524 Phc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079525.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123945588 123960042 - MGP_C3HHeJ_P0079525 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079526.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123952334 123954808 - Phc1 protein_coding retained_intron MGP_C3HHeJ_T0079527.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123953057 123959760 - MGP_C3HHeJ_P0079527 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079528.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123953796 123959316 - MGP_C3HHeJ_P0079528 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079529.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123953797 123956960 - MGP_C3HHeJ_P0079529 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0079530.1 MGP_C3HHeJ_G0030922.1 mouse_genomes_project 6 123953801 123959294 - MGP_C3HHeJ_P0079530 Phc1 protein_coding protein_coding MGP_C3HHeJ_T0005007.1 MGP_C3HHeJ_G0004266.1 mouse_genomes_project 6 126613894 126617193 - Gm15884 antisense antisense MGP_C3HHeJ_T0080660.1 MGP_C3HHeJ_G0031194.1 mouse_genomes_project 6 150122264 150180794 + MGP_C3HHeJ_P0080660 Stk38l protein_coding protein_coding MGP_C3HHeJ_T0002091.1 MGP_C3HHeJ_G0002012.1 mouse_genomes_project 6 113067715 113070497 + TEC TEC MGP_C3HHeJ_T0004903.1 MGP_C3HHeJ_G0004200.1 mouse_genomes_project 6 69262155 69264623 - Gm15082 antisense antisense MGP_C3HHeJ_T0015153.1 MGP_C3HHeJ_G0013257.1 mouse_genomes_project 6 47371792 47373038 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100766.1 MGP_C3HHeJ_G0038960.1 mouse_genomes_project 6 66758853 66758983 + Gm23527 snoRNA snoRNA MGP_C3HHeJ_T0002618.1 MGP_C3HHeJ_G0002511.1 mouse_genomes_project 6 39127679 39128150 + MGP_C3HHeJ_P0002618 Trbv15 TR_V_gene TR_V_gene MGP_C3HHeJ_T0078765.1 MGP_C3HHeJ_G0030762.1 mouse_genomes_project 6 98117921 98121733 - MGP_C3HHeJ_P0078765 Figla protein_coding protein_coding MGP_C3HHeJ_T0078766.1 MGP_C3HHeJ_G0030762.1 mouse_genomes_project 6 98118131 98122822 - Figla protein_coding processed_transcript MGP_C3HHeJ_T0098522.1 MGP_C3HHeJ_G0036723.1 mouse_genomes_project 6 46370942 46371350 - sense_intronic sense_intronic MGP_C3HHeJ_T0015055.1 MGP_C3HHeJ_G0013159.1 mouse_genomes_project 6 4348136 4348497 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078982.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101059374 101073453 - MGP_C3HHeJ_P0078982 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0078983.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101059374 101093550 - MGP_C3HHeJ_P0078983 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0078984.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101059375 101093581 - MGP_C3HHeJ_P0078984 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0078985.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101059375 101079914 - MGP_C3HHeJ_P0078985 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0078986.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101059494 101079917 - MGP_C3HHeJ_P0078986 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0078987.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101060742 101062345 - Dctn1 protein_coding retained_intron MGP_C3HHeJ_T0078988.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101063290 101064257 - Dctn1 protein_coding retained_intron MGP_C3HHeJ_T0078989.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101063778 101065015 - Dctn1 protein_coding retained_intron MGP_C3HHeJ_T0078990.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101064071 101064816 - Dctn1 protein_coding retained_intron MGP_C3HHeJ_T0078991.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101069791 101070788 - Dctn1 protein_coding retained_intron MGP_C3HHeJ_T0078992.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101069816 101093497 - MGP_C3HHeJ_P0078992 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0078993.1 MGP_C3HHeJ_G0030805.1 mouse_genomes_project 6 101070245 101079890 - MGP_C3HHeJ_P0078993 Dctn1 protein_coding protein_coding MGP_C3HHeJ_T0079334.1 MGP_C3HHeJ_G0030877.1 mouse_genomes_project 6 113273892 113287506 - MGP_C3HHeJ_P0079334 Krcc1 protein_coding protein_coding MGP_C3HHeJ_T0079335.1 MGP_C3HHeJ_G0030877.1 mouse_genomes_project 6 113273892 113287170 - MGP_C3HHeJ_P0079335 Krcc1 protein_coding protein_coding MGP_C3HHeJ_T0079336.1 MGP_C3HHeJ_G0030877.1 mouse_genomes_project 6 113273893 113276933 - MGP_C3HHeJ_P0079336 Krcc1 protein_coding protein_coding MGP_C3HHeJ_T0079337.1 MGP_C3HHeJ_G0030877.1 mouse_genomes_project 6 113274971 113287482 - MGP_C3HHeJ_P0079337 Krcc1 protein_coding protein_coding MGP_C3HHeJ_T0002035.1 MGP_C3HHeJ_G0001956.1 mouse_genomes_project 6 96269511 96272655 + TEC TEC MGP_C3HHeJ_T0015152.1 MGP_C3HHeJ_G0013256.1 mouse_genomes_project 6 47365649 47366133 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079115.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 103514971 104322517 - MGP_C3HHeJ_P0079115 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079116.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 103514973 104322383 - MGP_C3HHeJ_P0079116 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079117.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 103515791 104322476 - MGP_C3HHeJ_P0079117 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079118.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 104313551 104322346 - MGP_C3HHeJ_P0079118 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079119.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 104314528 104319823 - MGP_C3HHeJ_P0079119 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079120.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 104314536 104322476 - MGP_C3HHeJ_P0079120 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079121.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 104317543 104322052 - MGP_C3HHeJ_P0079121 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0079122.1 MGP_C3HHeJ_G0030831.1 mouse_genomes_project 6 104317710 104322506 - MGP_C3HHeJ_P0079122 Lrrtm4 protein_coding protein_coding MGP_C3HHeJ_T0076209.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 25923256 26357376 + MGP_C3HHeJ_P0076209 Snd1 protein_coding protein_coding MGP_C3HHeJ_T0076210.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 25923256 26346328 + MGP_C3HHeJ_P0076210 Snd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076211.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 25923267 26399925 + MGP_C3HHeJ_P0076211 Snd1 protein_coding protein_coding MGP_C3HHeJ_T0076212.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 25923337 25925760 + Snd1 protein_coding retained_intron MGP_C3HHeJ_T0076213.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 25923473 26262577 + MGP_C3HHeJ_P0076213 Snd1 protein_coding protein_coding MGP_C3HHeJ_T0076214.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26007225 26175181 + Snd1 protein_coding processed_transcript MGP_C3HHeJ_T0076216.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26154338 26156517 + Snd1 protein_coding processed_transcript MGP_C3HHeJ_T0076217.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26155149 26175191 + Snd1 protein_coding processed_transcript MGP_C3HHeJ_T0076218.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26224326 26343592 + Snd1 protein_coding processed_transcript MGP_C3HHeJ_T0076219.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26239926 26348822 + Snd1 protein_coding processed_transcript MGP_C3HHeJ_T0076221.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26316496 26348897 + Snd1 protein_coding processed_transcript MGP_C3HHeJ_T0076222.1 MGP_C3HHeJ_G0030207.1 mouse_genomes_project 6 26348631 26355071 + Snd1 protein_coding retained_intron MGP_C3HHeJ_T0011569.1 MGP_C3HHeJ_G0009702.1 mouse_genomes_project 6 100530933 100531127 - Gm27893 misc_RNA misc_RNA MGP_C3HHeJ_T0015280.1 MGP_C3HHeJ_G0013384.1 mouse_genomes_project 6 96109706 96110120 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000164.1 MGP_C3HHeJ_G0000125.1 mouse_genomes_project 6 115992832 115993501 + MGP_C3HHeJ_P0000164 Gm42543 IG_V_gene IG_V_gene MGP_C3HHeJ_T0080631.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149953250 149958277 - MGP_C3HHeJ_P0080631 Asun protein_coding protein_coding MGP_C3HHeJ_T0080632.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149953250 149960962 - MGP_C3HHeJ_P0080632 Asun protein_coding protein_coding MGP_C3HHeJ_T0080633.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149953250 149983729 - MGP_C3HHeJ_P0080633 Asun protein_coding protein_coding MGP_C3HHeJ_T0080634.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149953259 149954998 - Asun protein_coding retained_intron MGP_C3HHeJ_T0080635.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149953549 149954020 - Asun protein_coding retained_intron MGP_C3HHeJ_T0080636.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149953712 149957677 - Asun protein_coding retained_intron MGP_C3HHeJ_T0080637.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149956124 149959874 - Asun protein_coding processed_transcript MGP_C3HHeJ_T0080638.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149957723 149958446 - Asun protein_coding retained_intron MGP_C3HHeJ_T0080639.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149958637 149982157 - MGP_C3HHeJ_P0080639 Asun protein_coding protein_coding MGP_C3HHeJ_T0080640.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149966730 149970065 - Asun protein_coding retained_intron MGP_C3HHeJ_T0080641.1 MGP_C3HHeJ_G0031190.1 mouse_genomes_project 6 149979060 149983674 - Asun protein_coding retained_intron MGP_C3HHeJ_T0008501.1 MGP_C3HHeJ_G0006867.1 mouse_genomes_project 6 47202191 47202738 - Gm44019 lincRNA lincRNA MGP_C3HHeJ_T0080122.1 MGP_C3HHeJ_G0031065.1 mouse_genomes_project 6 132284717 132556950 - MGP_C3HHeJ_P0080122 protein_coding protein_coding MGP_C3HHeJ_T0080183.1 MGP_C3HHeJ_G0031104.1 mouse_genomes_project 6 136384866 136388441 + MGP_C3HHeJ_P0080183 5530400C23Rik protein_coding protein_coding MGP_C3HHeJ_T0080191.1 MGP_C3HHeJ_G0031107.1 mouse_genomes_project 6 137312595 137355913 + MGP_C3HHeJ_P0080191 Bcl2l14 protein_coding protein_coding MGP_C3HHeJ_T0080192.1 MGP_C3HHeJ_G0031107.1 mouse_genomes_project 6 137312622 137319648 + Bcl2l14 protein_coding processed_transcript MGP_C3HHeJ_T0080193.1 MGP_C3HHeJ_G0031107.1 mouse_genomes_project 6 137314931 137355901 + MGP_C3HHeJ_P0080193 Bcl2l14 protein_coding protein_coding MGP_C3HHeJ_T0080194.1 MGP_C3HHeJ_G0031107.1 mouse_genomes_project 6 137314943 137340142 + MGP_C3HHeJ_P0080194 Bcl2l14 protein_coding protein_coding MGP_C3HHeJ_T0080195.1 MGP_C3HHeJ_G0031107.1 mouse_genomes_project 6 137330724 137355292 + MGP_C3HHeJ_P0080195 Bcl2l14 protein_coding protein_coding MGP_C3HHeJ_T0080196.1 MGP_C3HHeJ_G0031107.1 mouse_genomes_project 6 137330761 137345528 + Bcl2l14 protein_coding retained_intron MGP_C3HHeJ_T0077089.1 MGP_C3HHeJ_G0030412.1 mouse_genomes_project 6 47395997 47400859 + MGP_C3HHeJ_P0077089 Svs1 protein_coding protein_coding MGP_C3HHeJ_T0098159.1 MGP_C3HHeJ_G0036371.1 mouse_genomes_project 6 27902105 27902201 - Gm25625 rRNA rRNA MGP_C3HHeJ_T0015195.1 MGP_C3HHeJ_G0013299.1 mouse_genomes_project 6 61943298 61943824 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075787.1 MGP_C3HHeJ_G0030120.1 mouse_genomes_project 6 728793 732436 + MGP_C3HHeJ_P0075787 Gngt1 protein_coding protein_coding MGP_C3HHeJ_T0075788.1 MGP_C3HHeJ_G0030120.1 mouse_genomes_project 6 728798 731902 + Gngt1 protein_coding retained_intron MGP_C3HHeJ_T0100747.1 MGP_C3HHeJ_G0038941.1 mouse_genomes_project 6 33708824 33708959 + Gm23273 snoRNA snoRNA MGP_C3HHeJ_T0078343.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92129264 92209691 - MGP_C3HHeJ_P0078343 Slc6a6 protein_coding protein_coding MGP_C3HHeJ_T0078344.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92138049 92140644 - Slc6a6 protein_coding retained_intron MGP_C3HHeJ_T0078345.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92140657 92142472 - Slc6a6 protein_coding retained_intron MGP_C3HHeJ_T0078346.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92145798 92168855 - MGP_C3HHeJ_P0078346 Slc6a6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078347.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92152746 92154193 - Slc6a6 protein_coding retained_intron MGP_C3HHeJ_T0078348.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92158661 92209715 - Slc6a6 protein_coding processed_transcript MGP_C3HHeJ_T0078349.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92166882 92209689 - Slc6a6 protein_coding retained_intron MGP_C3HHeJ_T0078350.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92168836 92209656 - MGP_C3HHeJ_P0078350 Slc6a6 protein_coding protein_coding MGP_C3HHeJ_T0078351.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92168871 92209664 - MGP_C3HHeJ_P0078351 Slc6a6 protein_coding protein_coding MGP_C3HHeJ_T0078352.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92168950 92192170 - MGP_C3HHeJ_P0078352 Slc6a6 protein_coding protein_coding MGP_C3HHeJ_T0078353.1 MGP_C3HHeJ_G0030678.1 mouse_genomes_project 6 92194515 92209635 - Slc6a6 protein_coding retained_intron MGP_C3HHeJ_T0079251.1 MGP_C3HHeJ_G0030862.1 mouse_genomes_project 6 112143981 112154580 - MGP_C3HHeJ_P0079251 Sftpb protein_coding protein_coding MGP_C3HHeJ_T0079252.1 MGP_C3HHeJ_G0030862.1 mouse_genomes_project 6 112143985 112154570 - MGP_C3HHeJ_P0079252 Sftpb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079253.1 MGP_C3HHeJ_G0030862.1 mouse_genomes_project 6 112144289 112153100 - Sftpb protein_coding retained_intron MGP_C3HHeJ_T0079254.1 MGP_C3HHeJ_G0030862.1 mouse_genomes_project 6 112145402 112154565 - MGP_C3HHeJ_P0079254 Sftpb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079255.1 MGP_C3HHeJ_G0030862.1 mouse_genomes_project 6 112145402 112154565 - MGP_C3HHeJ_P0079255 Sftpb protein_coding protein_coding MGP_C3HHeJ_T0078835.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98836624 98841100 + Sfxn5 protein_coding retained_intron MGP_C3HHeJ_T0078836.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98836624 98873554 + MGP_C3HHeJ_P0078836 Sfxn5 protein_coding protein_coding MGP_C3HHeJ_T0078837.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98836624 98961343 + MGP_C3HHeJ_P0078837 Sfxn5 protein_coding protein_coding MGP_C3HHeJ_T0078838.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98836627 98877686 + Sfxn5 protein_coding processed_transcript MGP_C3HHeJ_T0078839.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98836627 98939985 + MGP_C3HHeJ_P0078839 Sfxn5 protein_coding protein_coding MGP_C3HHeJ_T0078840.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98836640 98905728 + Sfxn5 protein_coding retained_intron MGP_C3HHeJ_T0078841.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98837296 98851520 + MGP_C3HHeJ_P0078841 Sfxn5 protein_coding protein_coding MGP_C3HHeJ_T0078842.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98849993 98873552 + Sfxn5 protein_coding processed_transcript MGP_C3HHeJ_T0078843.1 MGP_C3HHeJ_G0030781.1 mouse_genomes_project 6 98909508 98945087 + Sfxn5 protein_coding processed_transcript MGP_C3HHeJ_T0078442.1 MGP_C3HHeJ_G0030699.1 mouse_genomes_project 6 93843392 93845959 - MGP_C3HHeJ_P0078442 Vmn1r51 protein_coding protein_coding MGP_C3HHeJ_T0008616.1 MGP_C3HHeJ_G0006955.1 mouse_genomes_project 6 102287168 102288741 - lincRNA lincRNA MGP_C3HHeJ_T0008617.1 MGP_C3HHeJ_G0006955.1 mouse_genomes_project 6 102287788 102297648 - lincRNA lincRNA MGP_C3HHeJ_T0008468.1 MGP_C3HHeJ_G0006845.1 mouse_genomes_project 6 29344886 29351483 - Gm43293 lincRNA lincRNA MGP_C3HHeJ_T0004964.1 MGP_C3HHeJ_G0004236.1 mouse_genomes_project 6 98049768 98052485 + Gm44089 antisense antisense MGP_C3HHeJ_T0005061.1 MGP_C3HHeJ_G0004312.1 mouse_genomes_project 6 152412936 152419139 + antisense antisense MGP_C3HHeJ_T0005062.1 MGP_C3HHeJ_G0004312.1 mouse_genomes_project 6 152412936 152419131 + antisense antisense MGP_C3HHeJ_T0015316.1 MGP_C3HHeJ_G0013420.1 mouse_genomes_project 6 110560197 110560383 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098163.1 MGP_C3HHeJ_G0036375.1 mouse_genomes_project 6 71694504 71694615 - Gm22093 rRNA rRNA MGP_C3HHeJ_T0005002.1 MGP_C3HHeJ_G0004261.1 mouse_genomes_project 6 122355765 122391865 + Gm43915 antisense antisense MGP_C3HHeJ_T0015240.1 MGP_C3HHeJ_G0013344.1 mouse_genomes_project 6 79170834 79171286 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080054.1 MGP_C3HHeJ_G0031042.1 mouse_genomes_project 6 131328649 131337793 - MGP_C3HHeJ_P0080054 Clec2e protein_coding protein_coding MGP_C3HHeJ_T0000154.1 MGP_C3HHeJ_G0000117.1 mouse_genomes_project 6 114889259 114889815 + MGP_C3HHeJ_P0000154 IG_V_gene IG_V_gene MGP_C3HHeJ_T0099522.1 MGP_C3HHeJ_G0037716.1 mouse_genomes_project 6 64211989 64212090 - Gm25905 snRNA snRNA MGP_C3HHeJ_T0004866.1 MGP_C3HHeJ_G0004171.1 mouse_genomes_project 6 37503846 37512510 - Gm16272 antisense antisense MGP_C3HHeJ_T0015294.1 MGP_C3HHeJ_G0013398.1 mouse_genomes_project 6 100344873 100345237 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002033.1 MGP_C3HHeJ_G0001954.1 mouse_genomes_project 6 96233375 96235885 + TEC TEC MGP_C3HHeJ_T0001882.1 MGP_C3HHeJ_G0001804.1 mouse_genomes_project 6 3675311 3676665 - TEC TEC MGP_C3HHeJ_T0011564.1 MGP_C3HHeJ_G0009697.1 mouse_genomes_project 6 74949511 74949865 - Gm27813 misc_RNA misc_RNA MGP_C3HHeJ_T0077370.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55601473 55642898 - MGP_C3HHeJ_P0077370 Nt5c3 protein_coding protein_coding MGP_C3HHeJ_T0077371.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55601473 55620898 - MGP_C3HHeJ_P0077371 Nt5c3 protein_coding protein_coding MGP_C3HHeJ_T0077372.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55602024 55642785 - MGP_C3HHeJ_P0077372 Nt5c3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077373.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55602057 55642842 - MGP_C3HHeJ_P0077373 Nt5c3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077374.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55603864 55642690 - MGP_C3HHeJ_P0077374 Nt5c3 protein_coding protein_coding MGP_C3HHeJ_T0077375.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55605738 55608937 - Nt5c3 protein_coding retained_intron MGP_C3HHeJ_T0077376.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55610550 55642856 - Nt5c3 protein_coding processed_transcript MGP_C3HHeJ_T0077377.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55611812 55642823 - Nt5c3 protein_coding processed_transcript MGP_C3HHeJ_T0077378.1 MGP_C3HHeJ_G0030477.1 mouse_genomes_project 6 55614805 55620895 - Nt5c3 protein_coding retained_intron MGP_C3HHeJ_T0015343.1 MGP_C3HHeJ_G0013447.1 mouse_genomes_project 6 117264728 117266082 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102072.1 MGP_C3HHeJ_G0040037.1 mouse_genomes_project 6 38748510 38821645 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078155.1 MGP_C3HHeJ_G0030639.1 mouse_genomes_project 6 82203100 82435494 + MGP_C3HHeJ_P0078155 Pdzrn3 protein_coding protein_coding MGP_C3HHeJ_T0078156.1 MGP_C3HHeJ_G0030639.1 mouse_genomes_project 6 82203655 82405462 + Pdzrn3 protein_coding processed_transcript MGP_C3HHeJ_T0078157.1 MGP_C3HHeJ_G0030639.1 mouse_genomes_project 6 82226534 82428238 + Pdzrn3 protein_coding processed_transcript MGP_C3HHeJ_T0078158.1 MGP_C3HHeJ_G0030639.1 mouse_genomes_project 6 82386117 82415484 + Pdzrn3 protein_coding retained_intron MGP_C3HHeJ_T0098534.1 MGP_C3HHeJ_G0036735.1 mouse_genomes_project 6 140545896 140546204 + Gm44258 sense_intronic sense_intronic MGP_C3HHeJ_T0077252.1 MGP_C3HHeJ_G0030450.1 mouse_genomes_project 6 52420931 52426293 - MGP_C3HHeJ_P0077252 Tril protein_coding protein_coding MGP_C3HHeJ_T0079766.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126908156 126914574 + MGP_C3HHeJ_P0079766 Pianp protein_coding protein_coding MGP_C3HHeJ_T0079767.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126908339 126914574 + MGP_C3HHeJ_P0079767 Pianp protein_coding protein_coding MGP_C3HHeJ_T0079768.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126908552 126911209 + MGP_C3HHeJ_P0079768 Pianp protein_coding protein_coding MGP_C3HHeJ_T0079769.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126909914 126914574 + MGP_C3HHeJ_P0079769 Pianp protein_coding protein_coding MGP_C3HHeJ_T0079770.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126910087 126913621 + MGP_C3HHeJ_P0079770 Pianp protein_coding protein_coding MGP_C3HHeJ_T0079771.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126910116 126910923 + MGP_C3HHeJ_P0079771 Pianp protein_coding protein_coding MGP_C3HHeJ_T0079772.1 MGP_C3HHeJ_G0030981.1 mouse_genomes_project 6 126911139 126912527 + MGP_C3HHeJ_P0079772 Pianp protein_coding protein_coding MGP_C3HHeJ_T0015266.1 MGP_C3HHeJ_G0013370.1 mouse_genomes_project 6 89281248 89281467 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080232.1 MGP_C3HHeJ_G0031114.1 mouse_genomes_project 6 137857796 137864635 + MGP_C3HHeJ_P0080232 Cdkn1b protein_coding protein_coding MGP_C3HHeJ_T0080233.1 MGP_C3HHeJ_G0031114.1 mouse_genomes_project 6 137857796 137864635 + MGP_C3HHeJ_P0080233 Cdkn1b protein_coding protein_coding MGP_C3HHeJ_T0080234.1 MGP_C3HHeJ_G0031114.1 mouse_genomes_project 6 137857909 137863755 + MGP_C3HHeJ_P0080234 Cdkn1b protein_coding protein_coding MGP_C3HHeJ_T0015332.1 MGP_C3HHeJ_G0013436.1 mouse_genomes_project 6 115960125 115960577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008536.1 MGP_C3HHeJ_G0006893.1 mouse_genomes_project 6 60196091 60196779 - Gm43894 lincRNA lincRNA MGP_C3HHeJ_T0000262.1 MGP_C3HHeJ_G0000212.1 mouse_genomes_project 6 114328383 114328655 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076169.1 MGP_C3HHeJ_G0030198.1 mouse_genomes_project 6 22277814 22282971 - MGP_C3HHeJ_P0076169 Tmem229a protein_coding protein_coding MGP_C3HHeJ_T0015242.1 MGP_C3HHeJ_G0013346.1 mouse_genomes_project 6 79939975 79940933 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000274.1 MGP_C3HHeJ_G0000224.1 mouse_genomes_project 6 115465089 115465552 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0102141.1 MGP_C3HHeJ_G0040105.1 mouse_genomes_project 6 136216059 136217693 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079704.1 MGP_C3HHeJ_G0030970.1 mouse_genomes_project 6 126708334 126712875 - MGP_C3HHeJ_P0079704 Tpi1 protein_coding protein_coding MGP_C3HHeJ_T0079705.1 MGP_C3HHeJ_G0030970.1 mouse_genomes_project 6 126711051 126711443 - Tpi1 protein_coding retained_intron MGP_C3HHeJ_T0079706.1 MGP_C3HHeJ_G0030970.1 mouse_genomes_project 6 126711137 126712761 - Tpi1 protein_coding retained_intron MGP_C3HHeJ_T0079707.1 MGP_C3HHeJ_G0030970.1 mouse_genomes_project 6 126712066 126712757 - Tpi1 protein_coding retained_intron MGP_C3HHeJ_T0079805.1 MGP_C3HHeJ_G0030985.1 mouse_genomes_project 6 126982878 126997406 + MGP_C3HHeJ_P0079805 Lpar5 protein_coding protein_coding MGP_C3HHeJ_T0079806.1 MGP_C3HHeJ_G0030985.1 mouse_genomes_project 6 126986227 126996742 + MGP_C3HHeJ_P0079806 Lpar5 protein_coding protein_coding MGP_C3HHeJ_T0079807.1 MGP_C3HHeJ_G0030985.1 mouse_genomes_project 6 126986227 126997406 + MGP_C3HHeJ_P0079807 Lpar5 protein_coding protein_coding MGP_C3HHeJ_T0015473.1 MGP_C3HHeJ_G0013577.1 mouse_genomes_project 6 150686043 150686856 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015283.1 MGP_C3HHeJ_G0013387.1 mouse_genomes_project 6 98216176 98216814 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001932.1 MGP_C3HHeJ_G0001854.1 mouse_genomes_project 6 43507959 43508518 + TEC TEC MGP_C3HHeJ_T0079576.1 MGP_C3HHeJ_G0030934.1 mouse_genomes_project 6 124587048 124601050 + MGP_C3HHeJ_P0079576 Clec4a1 protein_coding protein_coding MGP_C3HHeJ_T0000021.1 MGP_C3HHeJ_G0000015.1 mouse_genomes_project 6 113864012 113864544 - MGP_C3HHeJ_P0000021 Igkc IG_C_gene IG_C_gene MGP_C3HHeJ_T0015421.1 MGP_C3HHeJ_G0013525.1 mouse_genomes_project 6 130800696 130800810 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015400.1 MGP_C3HHeJ_G0013504.1 mouse_genomes_project 6 125687548 125688395 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097918.1 MGP_C3HHeJ_G0036130.1 mouse_genomes_project 6 116131742 116132024 + pseudogene pseudogene MGP_C3HHeJ_T0078450.1 MGP_C3HHeJ_G0030704.1 mouse_genomes_project 6 94039260 94050883 + MGP_C3HHeJ_P0078450 Vmn1r45 protein_coding protein_coding MGP_C3HHeJ_T0001966.1 MGP_C3HHeJ_G0001888.1 mouse_genomes_project 6 65167238 65167889 + TEC TEC MGP_C3HHeJ_T0001967.1 MGP_C3HHeJ_G0001888.1 mouse_genomes_project 6 65167239 65170870 + TEC TEC MGP_C3HHeJ_T0077956.1 MGP_C3HHeJ_G0030604.1 mouse_genomes_project 6 69779093 69784744 - MGP_C3HHeJ_P0077956 Jagn1 protein_coding protein_coding MGP_C3HHeJ_T0077957.1 MGP_C3HHeJ_G0030604.1 mouse_genomes_project 6 69779113 69784703 - MGP_C3HHeJ_P0077957 Jagn1 protein_coding protein_coding MGP_C3HHeJ_T0077958.1 MGP_C3HHeJ_G0030604.1 mouse_genomes_project 6 69782303 69784718 - Jagn1 protein_coding retained_intron MGP_C3HHeJ_T0015207.1 MGP_C3HHeJ_G0013311.1 mouse_genomes_project 6 66654619 66655143 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076767.1 MGP_C3HHeJ_G0030310.1 mouse_genomes_project 6 38512265 38524651 - MGP_C3HHeJ_P0076767 Clec5a protein_coding protein_coding MGP_C3HHeJ_T0076768.1 MGP_C3HHeJ_G0030310.1 mouse_genomes_project 6 38514088 38524669 - Clec5a protein_coding processed_transcript MGP_C3HHeJ_T0076769.1 MGP_C3HHeJ_G0030310.1 mouse_genomes_project 6 38515221 38524643 - MGP_C3HHeJ_P0076769 Clec5a protein_coding protein_coding MGP_C3HHeJ_T0076770.1 MGP_C3HHeJ_G0030310.1 mouse_genomes_project 6 38515331 38524638 - MGP_C3HHeJ_P0076770 Clec5a protein_coding protein_coding MGP_C3HHeJ_T0015124.1 MGP_C3HHeJ_G0013228.1 mouse_genomes_project 6 37775495 37776579 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011537.1 MGP_C3HHeJ_G0009670.1 mouse_genomes_project 6 16413811 16414069 - Gm24213 misc_RNA misc_RNA MGP_C3HHeJ_T0102124.1 MGP_C3HHeJ_G0040088.1 mouse_genomes_project 6 132769834 132781326 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008426.1 MGP_C3HHeJ_G0006817.1 mouse_genomes_project 6 9519522 9573473 + lincRNA lincRNA MGP_C3HHeJ_T0015143.1 MGP_C3HHeJ_G0013247.1 mouse_genomes_project 6 45017486 45017934 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077482.1 MGP_C3HHeJ_G0030520.1 mouse_genomes_project 6 62122380 62149011 + MGP_C3HHeJ_P0077482 Atp6v1e1 protein_coding protein_coding MGP_C3HHeJ_T0077483.1 MGP_C3HHeJ_G0030520.1 mouse_genomes_project 6 62122481 62136954 + MGP_C3HHeJ_P0077483 Atp6v1e1 protein_coding protein_coding MGP_C3HHeJ_T0077484.1 MGP_C3HHeJ_G0030520.1 mouse_genomes_project 6 62122488 62137292 + Atp6v1e1 protein_coding retained_intron MGP_C3HHeJ_T0077485.1 MGP_C3HHeJ_G0030520.1 mouse_genomes_project 6 62122634 62133536 + MGP_C3HHeJ_P0077485 Atp6v1e1 protein_coding protein_coding MGP_C3HHeJ_T0077486.1 MGP_C3HHeJ_G0030520.1 mouse_genomes_project 6 62126772 62149001 + MGP_C3HHeJ_P0077486 Atp6v1e1 protein_coding protein_coding MGP_C3HHeJ_T0077487.1 MGP_C3HHeJ_G0030520.1 mouse_genomes_project 6 62140723 62149942 + Atp6v1e1 protein_coding retained_intron MGP_C3HHeJ_T0018064.1 MGP_C3HHeJ_G0015400.1 mouse_genomes_project 6 100792605 100799570 - B230319C09Rik processed_transcript antisense MGP_C3HHeJ_T0018065.1 MGP_C3HHeJ_G0015400.1 mouse_genomes_project 6 100795567 100799515 - B230319C09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018066.1 MGP_C3HHeJ_G0015400.1 mouse_genomes_project 6 100798684 100799513 - B230319C09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100810.1 MGP_C3HHeJ_G0039004.1 mouse_genomes_project 6 152438256 152438378 + Gm25539 snoRNA snoRNA MGP_C3HHeJ_T0076201.1 MGP_C3HHeJ_G0030205.1 mouse_genomes_project 6 25862328 25874379 + MGP_C3HHeJ_P0076201 Fscn3 protein_coding protein_coding MGP_C3HHeJ_T0076202.1 MGP_C3HHeJ_G0030205.1 mouse_genomes_project 6 25869391 25870989 + Fscn3 protein_coding processed_transcript MGP_C3HHeJ_T0008507.1 MGP_C3HHeJ_G0006871.1 mouse_genomes_project 6 49308324 49312284 - Gm44109 lincRNA lincRNA MGP_C3HHeJ_T0102068.1 MGP_C3HHeJ_G0040033.1 mouse_genomes_project 6 25904911 25909652 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015417.1 MGP_C3HHeJ_G0013521.1 mouse_genomes_project 6 130277757 130281358 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077003.1 MGP_C3HHeJ_G0030389.1 mouse_genomes_project 6 46923639 46927929 + MGP_C3HHeJ_P0077003 Atp6v0e2 protein_coding protein_coding MGP_C3HHeJ_T0077004.1 MGP_C3HHeJ_G0030389.1 mouse_genomes_project 6 46923662 46925994 + Atp6v0e2 protein_coding retained_intron MGP_C3HHeJ_T0077005.1 MGP_C3HHeJ_G0030389.1 mouse_genomes_project 6 46923689 46927929 + MGP_C3HHeJ_P0077005 Atp6v0e2 protein_coding protein_coding MGP_C3HHeJ_T0077793.1 MGP_C3HHeJ_G0030574.1 mouse_genomes_project 6 67336756 67369106 - MGP_C3HHeJ_P0077793 Cand2 protein_coding protein_coding MGP_C3HHeJ_T0099532.1 MGP_C3HHeJ_G0037726.1 mouse_genomes_project 6 87255502 87255599 + Gm22971 snRNA snRNA MGP_C3HHeJ_T0002021.1 MGP_C3HHeJ_G0001942.1 mouse_genomes_project 6 94639642 94641064 - TEC TEC MGP_C3HHeJ_T0076437.1 MGP_C3HHeJ_G0030242.1 mouse_genomes_project 6 28510574 28517061 - Tsga13 protein_coding processed_transcript MGP_C3HHeJ_T0076438.1 MGP_C3HHeJ_G0030242.1 mouse_genomes_project 6 28510574 28530522 - MGP_C3HHeJ_P0076438 Tsga13 protein_coding protein_coding MGP_C3HHeJ_T0076439.1 MGP_C3HHeJ_G0030242.1 mouse_genomes_project 6 28510808 28514094 - Tsga13 protein_coding retained_intron MGP_C3HHeJ_T0004891.1 MGP_C3HHeJ_G0004188.1 mouse_genomes_project 6 52759211 52763256 - 9530036M11Rik antisense antisense MGP_C3HHeJ_T0098170.1 MGP_C3HHeJ_G0036382.1 mouse_genomes_project 6 148397515 148397630 - Gm23071 rRNA rRNA MGP_C3HHeJ_T0102091.1 MGP_C3HHeJ_G0040056.1 mouse_genomes_project 6 56939757 56939862 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015223.1 MGP_C3HHeJ_G0013327.1 mouse_genomes_project 6 70692030 70693596 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001961.1 MGP_C3HHeJ_G0001883.1 mouse_genomes_project 6 57894078 57896173 + TEC TEC MGP_C3HHeJ_T0004874.1 MGP_C3HHeJ_G0004178.1 mouse_genomes_project 6 41594878 41601227 + 9430018G01Rik antisense antisense MGP_C3HHeJ_T0079560.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124380614 124398201 - MGP_C3HHeJ_P0079560 Slc2a3 protein_coding protein_coding MGP_C3HHeJ_T0079561.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124380631 124397978 - Slc2a3 protein_coding retained_intron MGP_C3HHeJ_T0079562.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124382736 124397846 - MGP_C3HHeJ_P0079562 Slc2a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079563.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124385118 124386712 - Slc2a3 protein_coding retained_intron MGP_C3HHeJ_T0079564.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124391249 124466261 - MGP_C3HHeJ_P0079564 Slc2a3 protein_coding protein_coding MGP_C3HHeJ_T0079565.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124391442 124438785 - MGP_C3HHeJ_P0079565 Slc2a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079566.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124394005 124397718 - MGP_C3HHeJ_P0079566 Slc2a3 protein_coding protein_coding MGP_C3HHeJ_T0079567.1 MGP_C3HHeJ_G0030930.1 mouse_genomes_project 6 124394064 124398376 - MGP_C3HHeJ_P0079567 Slc2a3 protein_coding protein_coding MGP_C3HHeJ_T0076641.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36273822 36361476 + MGP_C3HHeJ_P0076641 Ubn2 protein_coding protein_coding MGP_C3HHeJ_T0076642.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36274045 36351010 + MGP_C3HHeJ_P0076642 Ubn2 protein_coding protein_coding MGP_C3HHeJ_T0076643.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36280690 36373432 + MGP_C3HHeJ_P0076643 Ubn2 protein_coding protein_coding MGP_C3HHeJ_T0076644.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36303016 36303796 + Ubn2 protein_coding retained_intron MGP_C3HHeJ_T0076645.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36303954 36330528 + Ubn2 protein_coding retained_intron MGP_C3HHeJ_T0076646.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36328820 36334107 + Ubn2 protein_coding retained_intron MGP_C3HHeJ_T0076647.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36328918 36334991 + Ubn2 protein_coding processed_transcript MGP_C3HHeJ_T0076648.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36329766 36351010 + Ubn2 protein_coding retained_intron MGP_C3HHeJ_T0076649.1 MGP_C3HHeJ_G0030282.1 mouse_genomes_project 6 36339447 36373466 + MGP_C3HHeJ_P0076649 Ubn2 protein_coding protein_coding MGP_C3HHeJ_T0002134.1 MGP_C3HHeJ_G0002055.1 mouse_genomes_project 6 143834423 143836705 - TEC TEC MGP_C3HHeJ_T0008449.1 MGP_C3HHeJ_G0006833.1 mouse_genomes_project 6 28510492 28557032 + 4930412F09Rik lincRNA lincRNA MGP_C3HHeJ_T0015233.1 MGP_C3HHeJ_G0013337.1 mouse_genomes_project 6 75528875 75529364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018068.1 MGP_C3HHeJ_G0015402.1 mouse_genomes_project 6 117878202 117939543 - A430010J10Rik processed_transcript lincRNA MGP_C3HHeJ_T0018069.1 MGP_C3HHeJ_G0015402.1 mouse_genomes_project 6 117878518 117881698 - A430010J10Rik processed_transcript retained_intron MGP_C3HHeJ_T0018070.1 MGP_C3HHeJ_G0015402.1 mouse_genomes_project 6 117881012 117881419 - A430010J10Rik processed_transcript pseudogene MGP_C3HHeJ_T0018071.1 MGP_C3HHeJ_G0015402.1 mouse_genomes_project 6 117938181 117939539 - A430010J10Rik processed_transcript retained_intron MGP_C3HHeJ_T0078111.1 MGP_C3HHeJ_G0030630.1 mouse_genomes_project 6 75322234 75337438 - MGP_C3HHeJ_P0078111 Setmar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078112.1 MGP_C3HHeJ_G0030630.1 mouse_genomes_project 6 75322234 75337455 - MGP_C3HHeJ_P0078112 Setmar protein_coding protein_coding MGP_C3HHeJ_T0078613.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96256582 96276563 + Rab43 protein_coding processed_transcript MGP_C3HHeJ_T0078614.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96256648 96275917 + Rab43 protein_coding processed_transcript MGP_C3HHeJ_T0078615.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96256967 96274746 + MGP_C3HHeJ_P0078615 Rab43 protein_coding protein_coding MGP_C3HHeJ_T0078616.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96256967 96279862 + MGP_C3HHeJ_P0078616 Rab43 protein_coding protein_coding MGP_C3HHeJ_T0078617.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96258989 96277216 + Rab43 protein_coding processed_transcript MGP_C3HHeJ_T0078618.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96258992 96279862 + MGP_C3HHeJ_P0078618 Rab43 protein_coding protein_coding MGP_C3HHeJ_T0078619.1 MGP_C3HHeJ_G0030733.1 mouse_genomes_project 6 96278639 96279850 + Rab43 protein_coding processed_transcript MGP_C3HHeJ_T0077582.1 MGP_C3HHeJ_G0030534.1 mouse_genomes_project 6 63475484 63593365 + MGP_C3HHeJ_P0077582 Wnt5b protein_coding protein_coding MGP_C3HHeJ_T0077584.1 MGP_C3HHeJ_G0030534.1 mouse_genomes_project 6 63577524 63592501 + MGP_C3HHeJ_P0077584 Wnt5b protein_coding protein_coding MGP_C3HHeJ_T0008647.1 MGP_C3HHeJ_G0006984.1 mouse_genomes_project 6 129713320 129727717 + Gm43634 lincRNA lincRNA MGP_C3HHeJ_T0015229.1 MGP_C3HHeJ_G0013333.1 mouse_genomes_project 6 73945082 73945707 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076549.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32594306 32625464 - MGP_C3HHeJ_P0076549 Wdr91 protein_coding protein_coding MGP_C3HHeJ_T0076550.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32594306 32625464 - MGP_C3HHeJ_P0076550 Wdr91 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076551.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32619254 32625183 - MGP_C3HHeJ_P0076551 Wdr91 protein_coding protein_coding MGP_C3HHeJ_T0076552.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32621250 32625250 - MGP_C3HHeJ_P0076552 Wdr91 protein_coding protein_coding MGP_C3HHeJ_T0076553.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32622882 32625151 - MGP_C3HHeJ_P0076553 Wdr91 protein_coding protein_coding MGP_C3HHeJ_T0076554.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32623134 32625421 - Wdr91 protein_coding retained_intron MGP_C3HHeJ_T0076555.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32624034 32625424 - Wdr91 protein_coding processed_transcript MGP_C3HHeJ_T0076556.1 MGP_C3HHeJ_G0030261.1 mouse_genomes_project 6 32624048 32625430 - Wdr91 protein_coding processed_transcript MGP_C3HHeJ_T0008550.1 MGP_C3HHeJ_G0006905.1 mouse_genomes_project 6 65941150 65943186 - D030044L04Rik lincRNA lincRNA MGP_C3HHeJ_T0004987.1 MGP_C3HHeJ_G0004249.1 mouse_genomes_project 6 111398494 111408732 - Gm44031 antisense antisense MGP_C3HHeJ_T0079818.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127066941 127094588 + Iffo1 protein_coding retained_intron MGP_C3HHeJ_T0079819.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127066941 127094588 + MGP_C3HHeJ_P0079819 Iffo1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079820.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127066941 127094588 + MGP_C3HHeJ_P0079820 Iffo1 protein_coding protein_coding MGP_C3HHeJ_T0079821.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127066951 127094582 + MGP_C3HHeJ_P0079821 Iffo1 protein_coding protein_coding MGP_C3HHeJ_T0079822.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127066966 127094582 + Iffo1 protein_coding retained_intron MGP_C3HHeJ_T0079823.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127067501 127094582 + MGP_C3HHeJ_P0079823 Iffo1 protein_coding protein_coding MGP_C3HHeJ_T0079824.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127067726 127094582 + Iffo1 protein_coding retained_intron MGP_C3HHeJ_T0079825.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127070710 127081712 + Iffo1 protein_coding processed_transcript MGP_C3HHeJ_T0079826.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127071231 127082955 + Iffo1 protein_coding retained_intron MGP_C3HHeJ_T0079827.1 MGP_C3HHeJ_G0030988.1 mouse_genomes_project 6 127083572 127093863 + Iffo1 protein_coding retained_intron MGP_C3HHeJ_T0018028.1 MGP_C3HHeJ_G0015389.1 mouse_genomes_project 6 47253474 47268908 - Gm44764 processed_transcript lincRNA MGP_C3HHeJ_T0018029.1 MGP_C3HHeJ_G0015389.1 mouse_genomes_project 6 47268095 47268915 - Gm44764 processed_transcript retained_intron MGP_C3HHeJ_T0015150.1 MGP_C3HHeJ_G0013254.1 mouse_genomes_project 6 47222146 47225023 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000138.1 MGP_C3HHeJ_G0000106.1 mouse_genomes_project 6 114458248 114458553 + MGP_C3HHeJ_P0000138 IG_V_gene IG_V_gene MGP_C3HHeJ_T0077994.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69895056 69896800 - Ogg1 protein_coding retained_intron MGP_C3HHeJ_T0077995.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69895936 69902733 - MGP_C3HHeJ_P0077995 Ogg1 protein_coding protein_coding MGP_C3HHeJ_T0077996.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69895940 69902706 - MGP_C3HHeJ_P0077996 Ogg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077997.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69896132 69902692 - MGP_C3HHeJ_P0077997 Ogg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077998.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69900771 69902697 - Ogg1 protein_coding processed_transcript MGP_C3HHeJ_T0077999.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69901147 69902594 - Ogg1 protein_coding retained_intron MGP_C3HHeJ_T0078000.1 MGP_C3HHeJ_G0030611.1 mouse_genomes_project 6 69901278 69902720 - Ogg1 protein_coding retained_intron MGP_C3HHeJ_T0000140.1 MGP_C3HHeJ_G0000108.1 mouse_genomes_project 6 114592562 114593122 + MGP_C3HHeJ_P0000140 Igkv8-30 IG_V_gene IG_V_gene MGP_C3HHeJ_T0080061.1 MGP_C3HHeJ_G0031045.1 mouse_genomes_project 6 131580025 131589653 - MGP_C3HHeJ_P0080061 4922502D21Rik protein_coding protein_coding MGP_C3HHeJ_T0080062.1 MGP_C3HHeJ_G0031045.1 mouse_genomes_project 6 131580708 131584558 - MGP_C3HHeJ_P0080062 4922502D21Rik protein_coding protein_coding MGP_C3HHeJ_T0000136.1 MGP_C3HHeJ_G0000105.1 mouse_genomes_project 6 114432644 114433211 + MGP_C3HHeJ_P0000136 Igkv8-16 IG_V_gene IG_V_gene MGP_C3HHeJ_T0005023.1 MGP_C3HHeJ_G0004280.1 mouse_genomes_project 6 130542164 130585245 + Gm10069 antisense antisense MGP_C3HHeJ_T0005024.1 MGP_C3HHeJ_G0004280.1 mouse_genomes_project 6 130542746 130619804 + Gm10069 antisense antisense MGP_C3HHeJ_T0005025.1 MGP_C3HHeJ_G0004280.1 mouse_genomes_project 6 130583223 130602517 + Gm10069 antisense antisense MGP_C3HHeJ_T0008676.1 MGP_C3HHeJ_G0007003.1 mouse_genomes_project 6 144194914 144279137 + Gm30524 lincRNA lincRNA MGP_C3HHeJ_T0008677.1 MGP_C3HHeJ_G0007003.1 mouse_genomes_project 6 144194940 144277437 + Gm30524 lincRNA lincRNA MGP_C3HHeJ_T0079651.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126610656 126612191 + Phb2 protein_coding retained_intron MGP_C3HHeJ_T0079652.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126610656 126611389 + Phb2 protein_coding retained_intron MGP_C3HHeJ_T0079653.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126610656 126615272 + Phb2 protein_coding retained_intron MGP_C3HHeJ_T0079654.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126610656 126615272 + MGP_C3HHeJ_P0079654 Phb2 protein_coding protein_coding MGP_C3HHeJ_T0079655.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126611086 126613121 + MGP_C3HHeJ_P0079655 Phb2 protein_coding protein_coding MGP_C3HHeJ_T0079656.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126611442 126614962 + MGP_C3HHeJ_P0079656 Phb2 protein_coding protein_coding MGP_C3HHeJ_T0079657.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126613669 126615272 + Phb2 protein_coding retained_intron MGP_C3HHeJ_T0079658.1 MGP_C3HHeJ_G0030962.1 mouse_genomes_project 6 126613684 126614861 + Phb2 protein_coding processed_transcript MGP_C3HHeJ_T0000174.1 MGP_C3HHeJ_G0000133.1 mouse_genomes_project 6 116201370 116201840 - MGP_C3HHeJ_P0000174 Igkv10-95 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000175.1 MGP_C3HHeJ_G0000133.1 mouse_genomes_project 6 116201370 116201657 - MGP_C3HHeJ_P0000175 Igkv10-95 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015277.1 MGP_C3HHeJ_G0013381.1 mouse_genomes_project 6 93716924 93717506 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079396.1 MGP_C3HHeJ_G0030892.1 mouse_genomes_project 6 118445952 118446977 + MGP_C3HHeJ_P0079396 protein_coding protein_coding MGP_C3HHeJ_T0015061.1 MGP_C3HHeJ_G0013165.1 mouse_genomes_project 6 5986459 5986772 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015107.1 MGP_C3HHeJ_G0013211.1 mouse_genomes_project 6 27501136 27502289 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010730.1 MGP_C3HHeJ_G0008863.1 mouse_genomes_project 6 131947662 131947771 + Mir680-1 miRNA miRNA MGP_C3HHeJ_T0080209.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137642888 137722071 - MGP_C3HHeJ_P0080209 protein_coding protein_coding MGP_C3HHeJ_T0080210.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137642894 137691453 - MGP_C3HHeJ_P0080210 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080211.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137645253 137690597 - MGP_C3HHeJ_P0080211 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080212.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137646208 137653440 - protein_coding retained_intron MGP_C3HHeJ_T0080213.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137646360 137671022 - protein_coding processed_transcript MGP_C3HHeJ_T0080214.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137648015 137688377 - MGP_C3HHeJ_P0080214 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080215.1 MGP_C3HHeJ_G0031111.1 mouse_genomes_project 6 137664725 137720904 - MGP_C3HHeJ_P0080215 protein_coding protein_coding MGP_C3HHeJ_T0080130.1 MGP_C3HHeJ_G0031071.1 mouse_genomes_project 6 132617580 132758348 - MGP_C3HHeJ_P0080130 Klra1 protein_coding protein_coding MGP_C3HHeJ_T0080131.1 MGP_C3HHeJ_G0031071.1 mouse_genomes_project 6 132617879 132629202 - Klra1 protein_coding retained_intron MGP_C3HHeJ_T0098524.1 MGP_C3HHeJ_G0036725.1 mouse_genomes_project 6 69609426 69613479 - Gm44200 sense_intronic sense_intronic MGP_C3HHeJ_T0015148.1 MGP_C3HHeJ_G0013252.1 mouse_genomes_project 6 46764738 46765609 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008463.1 MGP_C3HHeJ_G0006842.1 mouse_genomes_project 6 29238701 29387895 + Gm43154 lincRNA lincRNA MGP_C3HHeJ_T0008464.1 MGP_C3HHeJ_G0006842.1 mouse_genomes_project 6 29238779 29388158 + Gm43154 lincRNA lincRNA MGP_C3HHeJ_T0008467.1 MGP_C3HHeJ_G0006842.1 mouse_genomes_project 6 29306643 29388160 + Gm43154 lincRNA lincRNA MGP_C3HHeJ_T0100749.1 MGP_C3HHeJ_G0038943.1 mouse_genomes_project 6 37322581 37322712 - Gm25402 snoRNA snoRNA MGP_C3HHeJ_T0004927.1 MGP_C3HHeJ_G0004216.1 mouse_genomes_project 6 88625781 88629384 + Kbtbd8os antisense antisense MGP_C3HHeJ_T0079085.1 MGP_C3HHeJ_G0030824.1 mouse_genomes_project 6 101328141 101355411 + Sema4f protein_coding retained_intron MGP_C3HHeJ_T0079086.1 MGP_C3HHeJ_G0030824.1 mouse_genomes_project 6 101328141 101359748 + MGP_C3HHeJ_P0079086 Sema4f protein_coding protein_coding MGP_C3HHeJ_T0079087.1 MGP_C3HHeJ_G0030824.1 mouse_genomes_project 6 101328365 101353032 + MGP_C3HHeJ_P0079087 Sema4f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079088.1 MGP_C3HHeJ_G0030824.1 mouse_genomes_project 6 101354046 101357549 + Sema4f protein_coding processed_transcript MGP_C3HHeJ_T0100809.1 MGP_C3HHeJ_G0039003.1 mouse_genomes_project 6 152076203 152076340 - Gm23456 snoRNA snoRNA MGP_C3HHeJ_T0010671.1 MGP_C3HHeJ_G0008804.1 mouse_genomes_project 6 28683292 28683380 - Mir29a miRNA miRNA MGP_C3HHeJ_T0001979.1 MGP_C3HHeJ_G0001900.1 mouse_genomes_project 6 70980659 70983182 - TEC TEC MGP_C3HHeJ_T0002152.1 MGP_C3HHeJ_G0002073.1 mouse_genomes_project 6 152523390 152526479 - TEC TEC MGP_C3HHeJ_T0008662.1 MGP_C3HHeJ_G0006994.1 mouse_genomes_project 6 137320367 137340500 - Gm44448 lincRNA lincRNA MGP_C3HHeJ_T0008706.1 MGP_C3HHeJ_G0007024.1 mouse_genomes_project 6 152376144 152381462 - Gm43913 lincRNA lincRNA MGP_C3HHeJ_T0004885.1 MGP_C3HHeJ_G0004185.1 mouse_genomes_project 6 50733377 50740168 + Gm29430 antisense antisense MGP_C3HHeJ_T0004886.1 MGP_C3HHeJ_G0004185.1 mouse_genomes_project 6 50734018 50740095 + Gm29430 antisense antisense MGP_C3HHeJ_T0002004.1 MGP_C3HHeJ_G0001925.1 mouse_genomes_project 6 90381324 90381807 + TEC TEC MGP_C3HHeJ_T0076632.1 MGP_C3HHeJ_G0030280.1 mouse_genomes_project 6 36129021 36187223 - MGP_C3HHeJ_P0076632 Zc3hav1 protein_coding protein_coding MGP_C3HHeJ_T0076633.1 MGP_C3HHeJ_G0030280.1 mouse_genomes_project 6 36134273 36187223 - MGP_C3HHeJ_P0076633 Zc3hav1 protein_coding protein_coding MGP_C3HHeJ_T0076634.1 MGP_C3HHeJ_G0030280.1 mouse_genomes_project 6 36139354 36187553 - MGP_C3HHeJ_P0076634 Zc3hav1 protein_coding protein_coding MGP_C3HHeJ_T0076635.1 MGP_C3HHeJ_G0030280.1 mouse_genomes_project 6 36139354 36187553 - MGP_C3HHeJ_P0076635 Zc3hav1 protein_coding protein_coding MGP_C3HHeJ_T0001929.1 MGP_C3HHeJ_G0001851.1 mouse_genomes_project 6 43475934 43477339 + TEC TEC MGP_C3HHeJ_T0098299.1 MGP_C3HHeJ_G0036511.1 mouse_genomes_project 6 127041616 127041752 + Gm23751 scaRNA scaRNA MGP_C3HHeJ_T0001958.1 MGP_C3HHeJ_G0001880.1 mouse_genomes_project 6 55663798 55666782 - TEC TEC MGP_C3HHeJ_T0001936.1 MGP_C3HHeJ_G0001858.1 mouse_genomes_project 6 44282505 44284460 + TEC TEC MGP_C3HHeJ_T0078329.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91977799 92000273 - MGP_C3HHeJ_P0078329 Ccdc174 protein_coding protein_coding MGP_C3HHeJ_T0078330.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91977799 92000273 - MGP_C3HHeJ_P0078330 Ccdc174 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078331.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91982303 91984885 - Ccdc174 protein_coding retained_intron MGP_C3HHeJ_T0078332.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91982349 91985342 - Ccdc174 protein_coding retained_intron MGP_C3HHeJ_T0078333.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91990021 92000251 - Ccdc174 protein_coding retained_intron MGP_C3HHeJ_T0078334.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91993340 92000273 - Ccdc174 protein_coding retained_intron MGP_C3HHeJ_T0078335.1 MGP_C3HHeJ_G0030676.1 mouse_genomes_project 6 91997816 92000254 - Ccdc174 protein_coding retained_intron MGP_C3HHeJ_T0076927.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45763823 45814189 + MGP_C3HHeJ_P0076927 Cul1 protein_coding protein_coding MGP_C3HHeJ_T0076928.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45763917 45797755 + MGP_C3HHeJ_P0076928 Cul1 protein_coding protein_coding MGP_C3HHeJ_T0076929.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45764329 45842359 + MGP_C3HHeJ_P0076929 Cul1 protein_coding protein_coding MGP_C3HHeJ_T0076930.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45764745 45844732 + MGP_C3HHeJ_P0076930 Cul1 protein_coding protein_coding MGP_C3HHeJ_T0076931.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45764813 45797967 + MGP_C3HHeJ_P0076931 Cul1 protein_coding protein_coding MGP_C3HHeJ_T0076932.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45833431 45844651 + Cul1 protein_coding processed_transcript MGP_C3HHeJ_T0076933.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45835615 45838395 + Cul1 protein_coding retained_intron MGP_C3HHeJ_T0076934.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45838311 45841874 + Cul1 protein_coding retained_intron MGP_C3HHeJ_T0076935.1 MGP_C3HHeJ_G0030376.1 mouse_genomes_project 6 45842156 45844372 + Cul1 protein_coding processed_transcript MGP_C3HHeJ_T0102093.1 MGP_C3HHeJ_G0040058.1 mouse_genomes_project 6 57058696 57059764 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078610.1 MGP_C3HHeJ_G0030732.1 mouse_genomes_project 6 96230034 96279854 + MGP_C3HHeJ_P0078610 Gm45140 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078612.1 MGP_C3HHeJ_G0030732.1 mouse_genomes_project 6 96246069 96276269 + MGP_C3HHeJ_P0078612 Gm45140 protein_coding protein_coding MGP_C3HHeJ_T0001948.1 MGP_C3HHeJ_G0001870.1 mouse_genomes_project 6 50809811 50811054 - TEC TEC MGP_C3HHeJ_T0005043.1 MGP_C3HHeJ_G0004296.1 mouse_genomes_project 6 145879480 145891336 + 5330439B14Rik antisense antisense MGP_C3HHeJ_T0101460.1 MGP_C3HHeJ_G0039469.1 mouse_genomes_project 6 133569499 133582996 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101461.1 MGP_C3HHeJ_G0039469.1 mouse_genomes_project 6 133569500 133583958 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0015292.1 MGP_C3HHeJ_G0013396.1 mouse_genomes_project 6 99144945 99145339 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005003.1 MGP_C3HHeJ_G0004262.1 mouse_genomes_project 6 122628843 122632002 - Gm15856 antisense antisense MGP_C3HHeJ_T0078452.1 MGP_C3HHeJ_G0030706.1 mouse_genomes_project 6 94095735 94262726 - MGP_C3HHeJ_P0078452 Vmn1r41 protein_coding protein_coding MGP_C3HHeJ_T0078659.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97069378 97072827 - Nfu1 protein_coding retained_intron MGP_C3HHeJ_T0078660.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97069378 97088647 - MGP_C3HHeJ_P0078660 Nfu1 protein_coding protein_coding MGP_C3HHeJ_T0078661.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97069380 97088047 - MGP_C3HHeJ_P0078661 Nfu1 protein_coding protein_coding MGP_C3HHeJ_T0078662.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97069385 97088047 - MGP_C3HHeJ_P0078662 Nfu1 protein_coding protein_coding MGP_C3HHeJ_T0078663.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97072287 97087880 - Nfu1 protein_coding processed_transcript MGP_C3HHeJ_T0078664.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97074635 97087994 - MGP_C3HHeJ_P0078664 Nfu1 protein_coding protein_coding MGP_C3HHeJ_T0078665.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97082122 97088047 - Nfu1 protein_coding retained_intron MGP_C3HHeJ_T0078666.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97084390 97087994 - Nfu1 protein_coding retained_intron MGP_C3HHeJ_T0078667.1 MGP_C3HHeJ_G0030746.1 mouse_genomes_project 6 97085495 97088003 - Nfu1 protein_coding retained_intron MGP_C3HHeJ_T0000298.1 MGP_C3HHeJ_G0000248.1 mouse_genomes_project 6 116877061 116877521 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0080609.1 MGP_C3HHeJ_G0031185.1 mouse_genomes_project 6 149002441 149010532 + MGP_C3HHeJ_P0080609 Tuba3b protein_coding protein_coding MGP_C3HHeJ_T0080203.1 MGP_C3HHeJ_G0031109.1 mouse_genomes_project 6 137536454 137561269 - MGP_C3HHeJ_P0080203 Mansc1 protein_coding protein_coding MGP_C3HHeJ_T0002674.1 MGP_C3HHeJ_G0002556.1 mouse_genomes_project 6 39209865 39210138 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0102126.1 MGP_C3HHeJ_G0040090.1 mouse_genomes_project 6 132946453 132972821 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008600.1 MGP_C3HHeJ_G0006944.1 mouse_genomes_project 6 97372981 97376592 - Gm44036 lincRNA lincRNA MGP_C3HHeJ_T0080295.1 MGP_C3HHeJ_G0031128.1 mouse_genomes_project 6 139711337 139790361 - MGP_C3HHeJ_P0080295 Gucy2c protein_coding protein_coding MGP_C3HHeJ_T0080296.1 MGP_C3HHeJ_G0031128.1 mouse_genomes_project 6 139711338 139790338 - MGP_C3HHeJ_P0080296 Gucy2c protein_coding protein_coding MGP_C3HHeJ_T0076720.1 MGP_C3HHeJ_G0030297.1 mouse_genomes_project 6 37512299 37524197 + MGP_C3HHeJ_P0076720 Ndufb2 protein_coding protein_coding MGP_C3HHeJ_T0076721.1 MGP_C3HHeJ_G0030297.1 mouse_genomes_project 6 37512308 37520287 + MGP_C3HHeJ_P0076721 Ndufb2 protein_coding protein_coding MGP_C3HHeJ_T0076722.1 MGP_C3HHeJ_G0030297.1 mouse_genomes_project 6 37512310 37520238 + Ndufb2 protein_coding processed_transcript MGP_C3HHeJ_T0076723.1 MGP_C3HHeJ_G0030297.1 mouse_genomes_project 6 37512313 37516502 + Ndufb2 protein_coding retained_intron MGP_C3HHeJ_T0076724.1 MGP_C3HHeJ_G0030297.1 mouse_genomes_project 6 37517018 37519047 + Ndufb2 protein_coding retained_intron MGP_C3HHeJ_T0076725.1 MGP_C3HHeJ_G0030297.1 mouse_genomes_project 6 37522598 37524125 + Ndufb2 protein_coding processed_transcript MGP_C3HHeJ_T0001923.1 MGP_C3HHeJ_G0001845.1 mouse_genomes_project 6 43245039 43246280 + TEC TEC MGP_C3HHeJ_T0099529.1 MGP_C3HHeJ_G0037723.1 mouse_genomes_project 6 80651001 80651109 - Gm26022 snRNA snRNA MGP_C3HHeJ_T0002067.1 MGP_C3HHeJ_G0001988.1 mouse_genomes_project 6 106310139 106312192 - TEC TEC MGP_C3HHeJ_T0005000.1 MGP_C3HHeJ_G0004259.1 mouse_genomes_project 6 121880136 121883083 + Gm44071 antisense antisense MGP_C3HHeJ_T0076162.1 MGP_C3HHeJ_G0030196.1 mouse_genomes_project 6 22114717 22124978 + MGP_C3HHeJ_P0076162 Spam1 protein_coding protein_coding MGP_C3HHeJ_T0076163.1 MGP_C3HHeJ_G0030196.1 mouse_genomes_project 6 22114730 22124978 + MGP_C3HHeJ_P0076163 Spam1 protein_coding protein_coding MGP_C3HHeJ_T0076164.1 MGP_C3HHeJ_G0030196.1 mouse_genomes_project 6 22114744 22120984 + Spam1 protein_coding retained_intron MGP_C3HHeJ_T0076165.1 MGP_C3HHeJ_G0030196.1 mouse_genomes_project 6 22119757 22124978 + MGP_C3HHeJ_P0076165 Spam1 protein_coding protein_coding MGP_C3HHeJ_T0102123.1 MGP_C3HHeJ_G0040087.1 mouse_genomes_project 6 132571484 132583368 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098160.1 MGP_C3HHeJ_G0036372.1 mouse_genomes_project 6 27934091 27934205 + n-R5s161 rRNA rRNA MGP_C3HHeJ_T0075907.1 MGP_C3HHeJ_G0030147.1 mouse_genomes_project 6 5343672 5432249 + MGP_C3HHeJ_P0075907 Glcci1 protein_coding protein_coding MGP_C3HHeJ_T0075908.1 MGP_C3HHeJ_G0030147.1 mouse_genomes_project 6 5345012 5414332 + MGP_C3HHeJ_P0075908 Glcci1 protein_coding protein_coding MGP_C3HHeJ_T0075909.1 MGP_C3HHeJ_G0030147.1 mouse_genomes_project 6 5354290 5428319 + MGP_C3HHeJ_P0075909 Glcci1 protein_coding protein_coding MGP_C3HHeJ_T0075910.1 MGP_C3HHeJ_G0030147.1 mouse_genomes_project 6 5374618 5428769 + MGP_C3HHeJ_P0075910 Glcci1 protein_coding protein_coding MGP_C3HHeJ_T0075911.1 MGP_C3HHeJ_G0030147.1 mouse_genomes_project 6 5414389 5426327 + Glcci1 protein_coding processed_transcript MGP_C3HHeJ_T0080688.1 MGP_C3HHeJ_G0031199.1 mouse_genomes_project 6 150426277 150428706 + MGP_C3HHeJ_P0080688 Rep15 protein_coding protein_coding MGP_C3HHeJ_T0010682.1 MGP_C3HHeJ_G0008815.1 mouse_genomes_project 6 50155974 50156051 + Gm22914 miRNA miRNA MGP_C3HHeJ_T0078538.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95504839 95520834 + MGP_C3HHeJ_P0078538 Sec61a1 protein_coding protein_coding MGP_C3HHeJ_T0078539.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95504841 95508361 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078540.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95504916 95508419 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078541.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95504951 95505567 + Sec61a1 protein_coding processed_transcript MGP_C3HHeJ_T0078542.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95504953 95508381 + Sec61a1 protein_coding processed_transcript MGP_C3HHeJ_T0078543.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95504971 95509934 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078544.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95507764 95509538 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078545.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95509843 95518084 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078546.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95510947 95511704 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078547.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95511019 95515734 + Sec61a1 protein_coding retained_intron MGP_C3HHeJ_T0078548.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95511337 95518240 + Sec61a1 protein_coding processed_transcript MGP_C3HHeJ_T0078549.1 MGP_C3HHeJ_G0030720.1 mouse_genomes_project 6 95518041 95519612 + Sec61a1 protein_coding processed_transcript MGP_C3HHeJ_T0078795.1 MGP_C3HHeJ_G0030771.1 mouse_genomes_project 6 98341767 98371184 - MGP_C3HHeJ_P0078795 Alms1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078796.1 MGP_C3HHeJ_G0030771.1 mouse_genomes_project 6 98341767 98567220 - MGP_C3HHeJ_P0078796 Alms1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078801.1 MGP_C3HHeJ_G0030771.1 mouse_genomes_project 6 98494477 98567248 - MGP_C3HHeJ_P0078801 Alms1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078802.1 MGP_C3HHeJ_G0030771.1 mouse_genomes_project 6 98500448 98506225 - Alms1 protein_coding retained_intron MGP_C3HHeJ_T0078803.1 MGP_C3HHeJ_G0030771.1 mouse_genomes_project 6 98510763 98513492 - Alms1 protein_coding retained_intron MGP_C3HHeJ_T0080356.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874710 140904926 + Dera protein_coding retained_intron MGP_C3HHeJ_T0080357.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874710 140881974 + Dera protein_coding processed_transcript MGP_C3HHeJ_T0080358.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874720 140961322 + MGP_C3HHeJ_P0080358 Dera protein_coding protein_coding MGP_C3HHeJ_T0080359.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874722 140961759 + MGP_C3HHeJ_P0080359 Dera protein_coding protein_coding MGP_C3HHeJ_T0080360.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874740 140982222 + MGP_C3HHeJ_P0080360 Dera protein_coding protein_coding MGP_C3HHeJ_T0080361.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874755 140887016 + Dera protein_coding processed_transcript MGP_C3HHeJ_T0080362.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140874779 140961301 + MGP_C3HHeJ_P0080362 Dera protein_coding protein_coding MGP_C3HHeJ_T0080363.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140881677 140881975 + Dera protein_coding TEC MGP_C3HHeJ_T0080364.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140895147 140905751 + Dera protein_coding processed_transcript MGP_C3HHeJ_T0080365.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140900766 140902431 + Dera protein_coding retained_intron MGP_C3HHeJ_T0080366.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140903596 140961348 + MGP_C3HHeJ_P0080366 Dera protein_coding protein_coding MGP_C3HHeJ_T0080367.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140919592 140932241 + Dera protein_coding processed_transcript MGP_C3HHeJ_T0080368.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140954135 140981696 + MGP_C3HHeJ_P0080368 Dera protein_coding protein_coding MGP_C3HHeJ_T0080369.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140959479 140961945 + Dera protein_coding retained_intron MGP_C3HHeJ_T0080370.1 MGP_C3HHeJ_G0031142.1 mouse_genomes_project 6 140960716 140967566 + MGP_C3HHeJ_P0080370 Dera protein_coding protein_coding MGP_C3HHeJ_T0075764.1 MGP_C3HHeJ_G0030115.1 mouse_genomes_project 6 72001 117844 - MGP_C3HHeJ_P0075764 Samd9l protein_coding protein_coding MGP_C3HHeJ_T0075765.1 MGP_C3HHeJ_G0030115.1 mouse_genomes_project 6 76694 88309 - MGP_C3HHeJ_P0075765 Samd9l protein_coding protein_coding MGP_C3HHeJ_T0080513.1 MGP_C3HHeJ_G0031173.1 mouse_genomes_project 6 146024990 146044005 + MGP_C3HHeJ_P0080513 Cmas protein_coding protein_coding MGP_C3HHeJ_T0080514.1 MGP_C3HHeJ_G0031173.1 mouse_genomes_project 6 146025058 146038881 + MGP_C3HHeJ_P0080514 Cmas protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080515.1 MGP_C3HHeJ_G0031173.1 mouse_genomes_project 6 146025068 146042955 + MGP_C3HHeJ_P0080515 Cmas protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080516.1 MGP_C3HHeJ_G0031173.1 mouse_genomes_project 6 146025079 146040511 + MGP_C3HHeJ_P0080516 Cmas protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080517.1 MGP_C3HHeJ_G0031173.1 mouse_genomes_project 6 146038256 146039625 + Cmas protein_coding retained_intron MGP_C3HHeJ_T0001981.1 MGP_C3HHeJ_G0001902.1 mouse_genomes_project 6 74813834 74815020 + TEC TEC MGP_C3HHeJ_T0076914.1 MGP_C3HHeJ_G0030373.1 mouse_genomes_project 6 41431232 41437113 - MGP_C3HHeJ_P0076914 Nobox protein_coding protein_coding MGP_C3HHeJ_T0076915.1 MGP_C3HHeJ_G0030373.1 mouse_genomes_project 6 41431258 41432694 - Nobox protein_coding processed_transcript MGP_C3HHeJ_T0076916.1 MGP_C3HHeJ_G0030373.1 mouse_genomes_project 6 41431456 41434795 - MGP_C3HHeJ_P0076916 Nobox protein_coding protein_coding MGP_C3HHeJ_T0001949.1 MGP_C3HHeJ_G0001871.1 mouse_genomes_project 6 50854497 50855225 + TEC TEC MGP_C3HHeJ_T0079360.1 MGP_C3HHeJ_G0030886.1 mouse_genomes_project 6 117656897 117741556 + MGP_C3HHeJ_P0079360 Il12rb2 protein_coding protein_coding MGP_C3HHeJ_T0079361.1 MGP_C3HHeJ_G0030886.1 mouse_genomes_project 6 117695577 117742238 + MGP_C3HHeJ_P0079361 Il12rb2 protein_coding protein_coding MGP_C3HHeJ_T0077343.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54753913 55048250 - MGP_C3HHeJ_P0077343 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077344.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54755809 55256679 - MGP_C3HHeJ_P0077344 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077345.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54756419 55047713 - Pde1c protein_coding processed_transcript MGP_C3HHeJ_T0077346.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54761846 55048377 - MGP_C3HHeJ_P0077346 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077347.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54765926 55057595 - MGP_C3HHeJ_P0077347 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077348.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54766041 54809718 - MGP_C3HHeJ_P0077348 Pde1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077349.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54766094 55057614 - MGP_C3HHeJ_P0077349 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077350.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54787155 55048169 - MGP_C3HHeJ_P0077350 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077351.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54790717 55057643 - MGP_C3HHeJ_P0077351 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077352.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54792427 55049892 - MGP_C3HHeJ_P0077352 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077353.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54792881 55048224 - MGP_C3HHeJ_P0077353 Pde1c protein_coding protein_coding MGP_C3HHeJ_T0077354.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 54869762 55048232 - Pde1c protein_coding retained_intron MGP_C3HHeJ_T0077355.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 55022245 55048171 - Pde1c protein_coding retained_intron MGP_C3HHeJ_T0077356.1 MGP_C3HHeJ_G0030472.1 mouse_genomes_project 6 55025462 55057616 - Pde1c protein_coding retained_intron MGP_C3HHeJ_T0015101.1 MGP_C3HHeJ_G0013205.1 mouse_genomes_project 6 22158519 22159349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005031.1 MGP_C3HHeJ_G0004286.1 mouse_genomes_project 6 137681695 137682646 + Gm44025 antisense antisense MGP_C3HHeJ_T0080763.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152620592 152624849 + MGP_C3HHeJ_P0080763 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080764.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622256 152631643 + MGP_C3HHeJ_P0080764 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080765.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622256 152631638 + MGP_C3HHeJ_P0080765 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080766.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622259 152625695 + MGP_C3HHeJ_P0080766 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080767.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622297 152625695 + MGP_C3HHeJ_P0080767 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080768.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622307 152630870 + MGP_C3HHeJ_P0080768 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080769.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622317 152631643 + MGP_C3HHeJ_P0080769 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080770.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622381 152630885 + MGP_C3HHeJ_P0080770 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0080771.1 MGP_C3HHeJ_G0031212.1 mouse_genomes_project 6 152622389 152631643 + MGP_C3HHeJ_P0080771 Mettl20 protein_coding protein_coding MGP_C3HHeJ_T0011523.1 MGP_C3HHeJ_G0009656.1 mouse_genomes_project 6 3631274 3631454 + Gm27699 misc_RNA misc_RNA MGP_C3HHeJ_T0078570.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 95997691 96054806 + MGP_C3HHeJ_P0078570 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0078571.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 95997716 96054293 + MGP_C3HHeJ_P0078571 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0078572.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 95997730 96048995 + MGP_C3HHeJ_P0078572 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0078573.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 95997763 96053727 + MGP_C3HHeJ_P0078573 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0078574.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 95997944 96054806 + MGP_C3HHeJ_P0078574 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0078575.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 96025062 96054655 + MGP_C3HHeJ_P0078575 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0078576.1 MGP_C3HHeJ_G0030726.1 mouse_genomes_project 6 96025062 96054158 + MGP_C3HHeJ_P0078576 Rab7 protein_coding protein_coding MGP_C3HHeJ_T0015410.1 MGP_C3HHeJ_G0013514.1 mouse_genomes_project 6 129027621 129027899 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015062.1 MGP_C3HHeJ_G0013166.1 mouse_genomes_project 6 7069324 7070387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008653.1 MGP_C3HHeJ_G0006990.1 mouse_genomes_project 6 131063934 131066906 - Gm44067 lincRNA lincRNA MGP_C3HHeJ_T0078695.1 MGP_C3HHeJ_G0030751.1 mouse_genomes_project 6 97441086 97462856 + MGP_C3HHeJ_P0078695 Mxd1 protein_coding protein_coding MGP_C3HHeJ_T0078696.1 MGP_C3HHeJ_G0030751.1 mouse_genomes_project 6 97441130 97444047 + Mxd1 protein_coding retained_intron MGP_C3HHeJ_T0078697.1 MGP_C3HHeJ_G0030751.1 mouse_genomes_project 6 97441147 97459098 + MGP_C3HHeJ_P0078697 Mxd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078698.1 MGP_C3HHeJ_G0030751.1 mouse_genomes_project 6 97447135 97460882 + MGP_C3HHeJ_P0078698 Mxd1 protein_coding protein_coding MGP_C3HHeJ_T0002521.1 MGP_C3HHeJ_G0002433.1 mouse_genomes_project 6 39564599 39564647 + MGP_C3HHeJ_P0002521 Trbj1-1 TR_J_gene TR_J_gene MGP_C3HHeJ_T0078603.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227031 96254478 + MGP_C3HHeJ_P0078603 Isy1 protein_coding protein_coding MGP_C3HHeJ_T0078604.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227073 96242445 + Isy1 protein_coding retained_intron MGP_C3HHeJ_T0078605.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227073 96232961 + Isy1 protein_coding retained_intron MGP_C3HHeJ_T0078606.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227082 96240071 + MGP_C3HHeJ_P0078606 Isy1 protein_coding protein_coding MGP_C3HHeJ_T0078607.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227091 96246193 + MGP_C3HHeJ_P0078607 Isy1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078608.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227116 96240666 + Isy1 protein_coding retained_intron MGP_C3HHeJ_T0078609.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96227129 96245309 + MGP_C3HHeJ_P0078609 Isy1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078611.1 MGP_C3HHeJ_G0030731.1 mouse_genomes_project 6 96245146 96246123 + Isy1 protein_coding retained_intron MGP_C3HHeJ_T0076790.1 MGP_C3HHeJ_G0030325.1 mouse_genomes_project 6 39552593 39555886 + MGP_C3HHeJ_P0076790 Prss2 protein_coding protein_coding MGP_C3HHeJ_T0076489.1 MGP_C3HHeJ_G0030252.1 mouse_genomes_project 6 31997624 32002644 - Akr1b3 protein_coding retained_intron MGP_C3HHeJ_T0076490.1 MGP_C3HHeJ_G0030252.1 mouse_genomes_project 6 31999124 32012665 - MGP_C3HHeJ_P0076490 Akr1b3 protein_coding protein_coding MGP_C3HHeJ_T0076491.1 MGP_C3HHeJ_G0030252.1 mouse_genomes_project 6 32002809 32012628 - Akr1b3 protein_coding retained_intron MGP_C3HHeJ_T0076492.1 MGP_C3HHeJ_G0030252.1 mouse_genomes_project 6 32004979 32012617 - Akr1b3 protein_coding retained_intron MGP_C3HHeJ_T0076493.1 MGP_C3HHeJ_G0030252.1 mouse_genomes_project 6 32005791 32012646 - MGP_C3HHeJ_P0076493 Akr1b3 protein_coding protein_coding MGP_C3HHeJ_T0078822.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98718091 98732504 - MGP_C3HHeJ_P0078822 Smyd5 protein_coding protein_coding MGP_C3HHeJ_T0078823.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98719083 98722893 - Smyd5 protein_coding retained_intron MGP_C3HHeJ_T0078824.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98719094 98721950 - Smyd5 protein_coding processed_transcript MGP_C3HHeJ_T0078825.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98719329 98722783 - Smyd5 protein_coding retained_intron MGP_C3HHeJ_T0078826.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98719566 98722798 - Smyd5 protein_coding processed_transcript MGP_C3HHeJ_T0078827.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98722567 98725379 - Smyd5 protein_coding retained_intron MGP_C3HHeJ_T0078828.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98724180 98732491 - Smyd5 protein_coding retained_intron MGP_C3HHeJ_T0078829.1 MGP_C3HHeJ_G0030778.1 mouse_genomes_project 6 98731674 98732420 - Smyd5 protein_coding retained_intron MGP_C3HHeJ_T0008459.1 MGP_C3HHeJ_G0006840.1 mouse_genomes_project 6 29000981 29012648 + Gm13844 lincRNA lincRNA MGP_C3HHeJ_T0077382.1 MGP_C3HHeJ_G0030479.1 mouse_genomes_project 6 55717625 55718681 + MGP_C3HHeJ_P0077382 Vmn1r5 protein_coding protein_coding MGP_C3HHeJ_T0001960.1 MGP_C3HHeJ_G0001882.1 mouse_genomes_project 6 56673987 56676714 + TEC TEC MGP_C3HHeJ_T0008599.1 MGP_C3HHeJ_G0006943.1 mouse_genomes_project 6 96477372 96478812 - Gm44201 lincRNA lincRNA MGP_C3HHeJ_T0076599.1 MGP_C3HHeJ_G0030272.1 mouse_genomes_project 6 35112911 35233673 - MGP_C3HHeJ_P0076599 Creb3l2 protein_coding protein_coding MGP_C3HHeJ_T0076600.1 MGP_C3HHeJ_G0030272.1 mouse_genomes_project 6 35120079 35122323 - Creb3l2 protein_coding processed_transcript MGP_C3HHeJ_T0008698.1 MGP_C3HHeJ_G0007018.1 mouse_genomes_project 6 151116235 151128304 + 1700049E15Rik lincRNA lincRNA MGP_C3HHeJ_T0008699.1 MGP_C3HHeJ_G0007018.1 mouse_genomes_project 6 151120721 151128278 + 1700049E15Rik lincRNA lincRNA MGP_C3HHeJ_T0099555.1 MGP_C3HHeJ_G0037749.1 mouse_genomes_project 6 139416028 139416113 + Gm25882 snRNA snRNA MGP_C3HHeJ_T0076700.1 MGP_C3HHeJ_G0030292.1 mouse_genomes_project 6 37271256 37282134 + MGP_C3HHeJ_P0076700 Rab19 protein_coding protein_coding MGP_C3HHeJ_T0076936.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45848723 45917649 - MGP_C3HHeJ_P0076936 Ezh2 protein_coding protein_coding MGP_C3HHeJ_T0076937.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45848723 45917649 - MGP_C3HHeJ_P0076937 Ezh2 protein_coding protein_coding MGP_C3HHeJ_T0076938.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45848723 45917649 - MGP_C3HHeJ_P0076938 Ezh2 protein_coding protein_coding MGP_C3HHeJ_T0076939.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45848723 45858948 - MGP_C3HHeJ_P0076939 Ezh2 protein_coding protein_coding MGP_C3HHeJ_T0076940.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45848903 45850701 - Ezh2 protein_coding retained_intron MGP_C3HHeJ_T0076941.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45849125 45900258 - MGP_C3HHeJ_P0076941 Ezh2 protein_coding protein_coding MGP_C3HHeJ_T0076942.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45850594 45853710 - Ezh2 protein_coding retained_intron MGP_C3HHeJ_T0076943.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45851214 45858922 - Ezh2 protein_coding retained_intron MGP_C3HHeJ_T0076944.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45852326 45864096 - Ezh2 protein_coding retained_intron MGP_C3HHeJ_T0076945.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45859055 45869984 - MGP_C3HHeJ_P0076945 Ezh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076946.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45862218 45869984 - MGP_C3HHeJ_P0076946 Ezh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076947.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45863995 45872434 - MGP_C3HHeJ_P0076947 Ezh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076948.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45864048 45917677 - MGP_C3HHeJ_P0076948 Ezh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076949.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45870606 45917960 - MGP_C3HHeJ_P0076949 Ezh2 protein_coding protein_coding MGP_C3HHeJ_T0076950.1 MGP_C3HHeJ_G0030377.1 mouse_genomes_project 6 45874245 45900605 - Ezh2 protein_coding processed_transcript MGP_C3HHeJ_T0079876.1 MGP_C3HHeJ_G0031000.1 mouse_genomes_project 6 127409951 127447748 - MGP_C3HHeJ_P0079876 Cd9 protein_coding protein_coding MGP_C3HHeJ_T0079877.1 MGP_C3HHeJ_G0031000.1 mouse_genomes_project 6 127410274 127427984 - Cd9 protein_coding processed_transcript MGP_C3HHeJ_T0079878.1 MGP_C3HHeJ_G0031000.1 mouse_genomes_project 6 127411801 127412700 - Cd9 protein_coding retained_intron MGP_C3HHeJ_T0001983.1 MGP_C3HHeJ_G0001904.1 mouse_genomes_project 6 79874764 79876258 - TEC TEC MGP_C3HHeJ_T0097917.1 MGP_C3HHeJ_G0036129.1 mouse_genomes_project 6 114328383 114328613 - pseudogene pseudogene MGP_C3HHeJ_T0078033.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70084779 70133267 - MGP_C3HHeJ_P0078033 Setd5 protein_coding protein_coding MGP_C3HHeJ_T0078034.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70084779 70161657 - MGP_C3HHeJ_P0078034 Setd5 protein_coding protein_coding MGP_C3HHeJ_T0078035.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70084790 70161383 - MGP_C3HHeJ_P0078035 Setd5 protein_coding protein_coding MGP_C3HHeJ_T0078036.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70086358 70110554 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078037.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70086379 70128439 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078038.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70086744 70129162 - MGP_C3HHeJ_P0078038 Setd5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078039.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70099787 70109622 - Setd5 protein_coding processed_transcript MGP_C3HHeJ_T0078040.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70100023 70133369 - Setd5 protein_coding processed_transcript MGP_C3HHeJ_T0078041.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70107919 70112954 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078042.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70120372 70129431 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078043.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70120686 70161420 - Setd5 protein_coding processed_transcript MGP_C3HHeJ_T0078044.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70120717 70127887 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078045.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70124614 70127887 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078046.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70130742 70161657 - Setd5 protein_coding retained_intron MGP_C3HHeJ_T0078047.1 MGP_C3HHeJ_G0030616.1 mouse_genomes_project 6 70131984 70161461 - Setd5 protein_coding processed_transcript MGP_C3HHeJ_T0102087.1 MGP_C3HHeJ_G0040052.1 mouse_genomes_project 6 56697366 56697868 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0080055.1 MGP_C3HHeJ_G0031043.1 mouse_genomes_project 6 131429052 131435593 + MGP_C3HHeJ_P0080055 Clec2d protein_coding protein_coding MGP_C3HHeJ_T0075877.1 MGP_C3HHeJ_G0030138.1 mouse_genomes_project 6 3780419 3859958 + MGP_C3HHeJ_P0075877 Sdhaf3 protein_coding protein_coding MGP_C3HHeJ_T0075878.1 MGP_C3HHeJ_G0030138.1 mouse_genomes_project 6 3780422 3792787 + Sdhaf3 protein_coding processed_transcript MGP_C3HHeJ_T0077505.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62516593 62609228 - MGP_C3HHeJ_P0077505 Kdm5a protein_coding protein_coding MGP_C3HHeJ_T0077506.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62521453 62532147 - Kdm5a protein_coding processed_transcript MGP_C3HHeJ_T0077507.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62530323 62532544 - Kdm5a protein_coding retained_intron MGP_C3HHeJ_T0077508.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62532068 62535128 - Kdm5a protein_coding retained_intron MGP_C3HHeJ_T0077509.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62543773 62609228 - MGP_C3HHeJ_P0077509 Kdm5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077510.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62543800 62608894 - MGP_C3HHeJ_P0077510 Kdm5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077511.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62549453 62557442 - Kdm5a protein_coding retained_intron MGP_C3HHeJ_T0077512.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62580587 62598553 - MGP_C3HHeJ_P0077512 Kdm5a protein_coding protein_coding MGP_C3HHeJ_T0077513.1 MGP_C3HHeJ_G0030526.1 mouse_genomes_project 6 62603749 62609220 - Kdm5a protein_coding retained_intron MGP_C3HHeJ_T0080750.1 MGP_C3HHeJ_G0031210.1 mouse_genomes_project 6 152389282 152412882 - MGP_C3HHeJ_P0080750 Fam60a protein_coding protein_coding MGP_C3HHeJ_T0080751.1 MGP_C3HHeJ_G0031210.1 mouse_genomes_project 6 152389893 152401353 - MGP_C3HHeJ_P0080751 Fam60a protein_coding protein_coding MGP_C3HHeJ_T0080752.1 MGP_C3HHeJ_G0031210.1 mouse_genomes_project 6 152393043 152412793 - MGP_C3HHeJ_P0080752 Fam60a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080753.1 MGP_C3HHeJ_G0031210.1 mouse_genomes_project 6 152397520 152414482 - MGP_C3HHeJ_P0080753 Fam60a protein_coding protein_coding MGP_C3HHeJ_T0080754.1 MGP_C3HHeJ_G0031210.1 mouse_genomes_project 6 152399591 152414459 - Fam60a protein_coding retained_intron MGP_C3HHeJ_T0080755.1 MGP_C3HHeJ_G0031210.1 mouse_genomes_project 6 152412459 152418453 - Fam60a protein_coding processed_transcript MGP_C3HHeJ_T0015481.1 MGP_C3HHeJ_G0013585.1 mouse_genomes_project 6 152925710 152926574 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102138.1 MGP_C3HHeJ_G0040102.1 mouse_genomes_project 6 135875361 135876763 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004963.1 MGP_C3HHeJ_G0004235.1 mouse_genomes_project 6 97742978 97745724 + Gm44941 antisense antisense MGP_C3HHeJ_T0015428.1 MGP_C3HHeJ_G0013532.1 mouse_genomes_project 6 131945724 131946326 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002617.1 MGP_C3HHeJ_G0002510.1 mouse_genomes_project 6 39115780 39116252 + MGP_C3HHeJ_P0002617 Trbv14 TR_V_gene TR_V_gene MGP_C3HHeJ_T0079636.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126557838 126602691 + Lpcat3 protein_coding retained_intron MGP_C3HHeJ_T0079637.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126557838 126602739 + MGP_C3HHeJ_P0079637 Lpcat3 protein_coding protein_coding MGP_C3HHeJ_T0079638.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126557983 126600611 + MGP_C3HHeJ_P0079638 Lpcat3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079639.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126557992 126596489 + Lpcat3 protein_coding retained_intron MGP_C3HHeJ_T0079640.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126558026 126597548 + Lpcat3 protein_coding retained_intron MGP_C3HHeJ_T0079641.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126598406 126600934 + Lpcat3 protein_coding retained_intron MGP_C3HHeJ_T0079642.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126600577 126601379 + Lpcat3 protein_coding processed_transcript MGP_C3HHeJ_T0079643.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126601075 126602249 + Lpcat3 protein_coding retained_intron MGP_C3HHeJ_T0079644.1 MGP_C3HHeJ_G0030960.1 mouse_genomes_project 6 126601325 126602338 + Lpcat3 protein_coding retained_intron MGP_C3HHeJ_T0004831.1 MGP_C3HHeJ_G0004145.1 mouse_genomes_project 6 5252865 5277223 - Gm16043 antisense antisense MGP_C3HHeJ_T0000281.1 MGP_C3HHeJ_G0000231.1 mouse_genomes_project 6 115973253 115973656 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015169.1 MGP_C3HHeJ_G0013273.1 mouse_genomes_project 6 50680165 50680434 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000152.1 MGP_C3HHeJ_G0000116.1 mouse_genomes_project 6 114804834 114805388 + MGP_C3HHeJ_P0000152 Igkv5-39 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000153.1 MGP_C3HHeJ_G0000116.1 mouse_genomes_project 6 114805101 114805388 + MGP_C3HHeJ_P0000153 Igkv5-39 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000296.1 MGP_C3HHeJ_G0000246.1 mouse_genomes_project 6 116785448 116785750 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015192.1 MGP_C3HHeJ_G0013296.1 mouse_genomes_project 6 61409068 61410604 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015370.1 MGP_C3HHeJ_G0013474.1 mouse_genomes_project 6 119905600 119906014 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010685.1 MGP_C3HHeJ_G0008818.1 mouse_genomes_project 6 54864004 54864108 - Gm44413 miRNA miRNA MGP_C3HHeJ_T0001952.1 MGP_C3HHeJ_G0001874.1 mouse_genomes_project 6 51294354 51294966 - TEC TEC MGP_C3HHeJ_T0075963.1 MGP_C3HHeJ_G0030156.1 mouse_genomes_project 6 10541428 10601580 - MGP_C3HHeJ_P0075963 Bmt2 protein_coding protein_coding MGP_C3HHeJ_T0075964.1 MGP_C3HHeJ_G0030156.1 mouse_genomes_project 6 10542554 10601552 - MGP_C3HHeJ_P0075964 Bmt2 protein_coding protein_coding MGP_C3HHeJ_T0078815.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98711761 98717319 + Pradc1 protein_coding processed_transcript MGP_C3HHeJ_T0078816.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98712450 98716979 + Pradc1 protein_coding retained_intron MGP_C3HHeJ_T0078817.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98712458 98717492 + MGP_C3HHeJ_P0078817 Pradc1 protein_coding protein_coding MGP_C3HHeJ_T0078818.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98712482 98716994 + Pradc1 protein_coding processed_transcript MGP_C3HHeJ_T0078819.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98712493 98716847 + Pradc1 protein_coding processed_transcript MGP_C3HHeJ_T0078820.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98712505 98717493 + Pradc1 protein_coding retained_intron MGP_C3HHeJ_T0078821.1 MGP_C3HHeJ_G0030777.1 mouse_genomes_project 6 98712527 98717724 + MGP_C3HHeJ_P0078821 Pradc1 protein_coding protein_coding MGP_C3HHeJ_T0008702.1 MGP_C3HHeJ_G0007021.1 mouse_genomes_project 6 152046948 152054489 - Gm6313 lincRNA lincRNA MGP_C3HHeJ_T0008703.1 MGP_C3HHeJ_G0007021.1 mouse_genomes_project 6 152046948 152049896 - Gm6313 lincRNA lincRNA MGP_C3HHeJ_T0100801.1 MGP_C3HHeJ_G0038995.1 mouse_genomes_project 6 127192216 127192345 - Gm24175 snoRNA snoRNA MGP_C3HHeJ_T0001879.1 MGP_C3HHeJ_G0001801.1 mouse_genomes_project 6 1994488 1999426 - TEC TEC MGP_C3HHeJ_T0101322.1 MGP_C3HHeJ_G0039409.1 mouse_genomes_project 6 46894750 46920840 + transcribed_unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101323.1 MGP_C3HHeJ_G0039409.1 mouse_genomes_project 6 46898530 46916446 + transcribed_unitary_pseudogene transcribed_unitary_pseudogene MGP_C3HHeJ_T0101324.1 MGP_C3HHeJ_G0039409.1 mouse_genomes_project 6 46902648 46918512 + transcribed_unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101325.1 MGP_C3HHeJ_G0039409.1 mouse_genomes_project 6 46902705 46914520 + transcribed_unitary_pseudogene processed_transcript MGP_C3HHeJ_T0010711.1 MGP_C3HHeJ_G0008844.1 mouse_genomes_project 6 101170580 101170657 + Mir3470a miRNA miRNA MGP_C3HHeJ_T0077238.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888747 51995517 + 9430076C15Rik protein_coding retained_intron MGP_C3HHeJ_T0077239.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888747 52301120 + MGP_C3HHeJ_P0077239 9430076C15Rik protein_coding protein_coding MGP_C3HHeJ_T0077240.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888763 51999715 + 9430076C15Rik protein_coding processed_transcript MGP_C3HHeJ_T0077241.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888772 52002219 + 9430076C15Rik protein_coding processed_transcript MGP_C3HHeJ_T0077242.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888795 51890197 + 9430076C15Rik protein_coding processed_transcript MGP_C3HHeJ_T0077243.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888795 52246477 + 9430076C15Rik protein_coding processed_transcript MGP_C3HHeJ_T0077244.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888795 51992938 + 9430076C15Rik protein_coding processed_transcript MGP_C3HHeJ_T0077245.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888795 52209445 + 9430076C15Rik protein_coding retained_intron MGP_C3HHeJ_T0077246.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51888798 52017329 + 9430076C15Rik protein_coding processed_transcript MGP_C3HHeJ_T0077247.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51891912 52294621 + MGP_C3HHeJ_P0077247 9430076C15Rik protein_coding protein_coding MGP_C3HHeJ_T0077248.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 51912180 52294621 + MGP_C3HHeJ_P0077248 9430076C15Rik protein_coding protein_coding MGP_C3HHeJ_T0077249.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 52170583 52301111 + MGP_C3HHeJ_P0077249 9430076C15Rik protein_coding protein_coding MGP_C3HHeJ_T0077250.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 52170658 52210936 + 9430076C15Rik protein_coding retained_intron MGP_C3HHeJ_T0077251.1 MGP_C3HHeJ_G0030449.1 mouse_genomes_project 6 52170659 52207791 + MGP_C3HHeJ_P0077251 9430076C15Rik protein_coding protein_coding MGP_C3HHeJ_T0078639.1 MGP_C3HHeJ_G0030741.1 mouse_genomes_project 6 96709153 96715304 - MGP_C3HHeJ_P0078639 Gkn2 protein_coding protein_coding MGP_C3HHeJ_T0000198.1 MGP_C3HHeJ_G0000151.1 mouse_genomes_project 6 117137029 117137324 - MGP_C3HHeJ_P0000198 Igkv9-129 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000199.1 MGP_C3HHeJ_G0000151.1 mouse_genomes_project 6 117137029 117137327 - MGP_C3HHeJ_P0000199 Igkv9-129 IG_V_gene IG_V_gene MGP_C3HHeJ_T0078074.1 MGP_C3HHeJ_G0030622.1 mouse_genomes_project 6 70883984 70916720 + MGP_C3HHeJ_P0078074 Ssu2 protein_coding protein_coding MGP_C3HHeJ_T0078075.1 MGP_C3HHeJ_G0030622.1 mouse_genomes_project 6 70884008 70905212 + MGP_C3HHeJ_P0078075 Ssu2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078076.1 MGP_C3HHeJ_G0030622.1 mouse_genomes_project 6 70894284 70906168 + Ssu2 protein_coding processed_transcript MGP_C3HHeJ_T0078077.1 MGP_C3HHeJ_G0030622.1 mouse_genomes_project 6 70897623 70905633 + Ssu2 protein_coding retained_intron MGP_C3HHeJ_T0077154.1 MGP_C3HHeJ_G0030428.1 mouse_genomes_project 6 49953036 49983253 + MGP_C3HHeJ_P0077154 Nfe2l3 protein_coding protein_coding MGP_C3HHeJ_T0077155.1 MGP_C3HHeJ_G0030428.1 mouse_genomes_project 6 49953115 49957296 + Nfe2l3 protein_coding processed_transcript MGP_C3HHeJ_T0077156.1 MGP_C3HHeJ_G0030428.1 mouse_genomes_project 6 49953115 49981361 + MGP_C3HHeJ_P0077156 Nfe2l3 protein_coding protein_coding MGP_C3HHeJ_T0004919.1 MGP_C3HHeJ_G0004211.1 mouse_genomes_project 6 81209538 81280406 - Gm44188 antisense antisense MGP_C3HHeJ_T0004920.1 MGP_C3HHeJ_G0004211.1 mouse_genomes_project 6 81239724 81280428 - Gm44188 antisense antisense MGP_C3HHeJ_T0001916.1 MGP_C3HHeJ_G0001838.1 mouse_genomes_project 6 36998219 36999436 - TEC TEC MGP_C3HHeJ_T0078457.1 MGP_C3HHeJ_G0030710.1 mouse_genomes_project 6 94321052 94352568 - MGP_C3HHeJ_P0078457 Txnrd3 protein_coding protein_coding MGP_C3HHeJ_T0078458.1 MGP_C3HHeJ_G0030710.1 mouse_genomes_project 6 94321052 94352568 - MGP_C3HHeJ_P0078458 Txnrd3 protein_coding protein_coding MGP_C3HHeJ_T0079162.1 MGP_C3HHeJ_G0030845.1 mouse_genomes_project 6 111204299 111402111 + MGP_C3HHeJ_P0079162 Dnah6 protein_coding protein_coding MGP_C3HHeJ_T0079163.1 MGP_C3HHeJ_G0030845.1 mouse_genomes_project 6 111204319 111402114 + MGP_C3HHeJ_P0079163 Dnah6 protein_coding protein_coding MGP_C3HHeJ_T0079164.1 MGP_C3HHeJ_G0030845.1 mouse_genomes_project 6 111206151 111401978 + MGP_C3HHeJ_P0079164 Dnah6 protein_coding protein_coding MGP_C3HHeJ_T0079165.1 MGP_C3HHeJ_G0030845.1 mouse_genomes_project 6 111281166 111334394 + Dnah6 protein_coding retained_intron MGP_C3HHeJ_T0080783.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152806806 152828908 + MGP_C3HHeJ_P0080783 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080784.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152806820 152841193 + MGP_C3HHeJ_P0080784 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080785.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152806848 152831214 + MGP_C3HHeJ_P0080785 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080786.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152806866 152837157 + MGP_C3HHeJ_P0080786 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080787.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152806866 152837157 + MGP_C3HHeJ_P0080787 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080788.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152806965 152807848 + 2810474O19Rik protein_coding retained_intron MGP_C3HHeJ_T0080789.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152807120 152827726 + MGP_C3HHeJ_P0080789 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080790.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152808808 152811759 + 2810474O19Rik protein_coding retained_intron MGP_C3HHeJ_T0080791.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152816293 152828204 + MGP_C3HHeJ_P0080791 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080792.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152826892 152828010 + MGP_C3HHeJ_P0080792 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0080793.1 MGP_C3HHeJ_G0031214.1 mouse_genomes_project 6 152827694 152841188 + MGP_C3HHeJ_P0080793 2810474O19Rik protein_coding protein_coding MGP_C3HHeJ_T0100798.1 MGP_C3HHeJ_G0038992.1 mouse_genomes_project 6 126138489 126138621 - Gm25311 snoRNA snoRNA MGP_C3HHeJ_T0001876.1 MGP_C3HHeJ_G0001798.1 mouse_genomes_project 6 1707659 1711808 + TEC TEC MGP_C3HHeJ_T0101442.1 MGP_C3HHeJ_G0039459.1 mouse_genomes_project 6 99030158 99031174 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101443.1 MGP_C3HHeJ_G0039459.1 mouse_genomes_project 6 99030413 99031377 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101444.1 MGP_C3HHeJ_G0039459.1 mouse_genomes_project 6 99030869 99033265 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0079355.1 MGP_C3HHeJ_G0030883.1 mouse_genomes_project 6 113794512 113825304 + MGP_C3HHeJ_P0079355 Rpia protein_coding protein_coding MGP_C3HHeJ_T0079356.1 MGP_C3HHeJ_G0030883.1 mouse_genomes_project 6 113794741 113805743 + Rpia protein_coding retained_intron MGP_C3HHeJ_T0079357.1 MGP_C3HHeJ_G0030883.1 mouse_genomes_project 6 113814972 113824751 + Rpia protein_coding retained_intron MGP_C3HHeJ_T0004946.1 MGP_C3HHeJ_G0004228.1 mouse_genomes_project 6 96048619 96073366 - Gm5577 antisense antisense MGP_C3HHeJ_T0004947.1 MGP_C3HHeJ_G0004228.1 mouse_genomes_project 6 96070868 96074166 - Gm5577 antisense antisense MGP_C3HHeJ_T0004948.1 MGP_C3HHeJ_G0004228.1 mouse_genomes_project 6 96070876 96073366 - Gm5577 antisense antisense MGP_C3HHeJ_T0000134.1 MGP_C3HHeJ_G0000103.1 mouse_genomes_project 6 114308001 114308579 + MGP_C3HHeJ_P0000134 Igkv8-21 IG_V_gene IG_V_gene MGP_C3HHeJ_T0102106.1 MGP_C3HHeJ_G0040071.1 mouse_genomes_project 6 94304009 94304808 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015206.1 MGP_C3HHeJ_G0013310.1 mouse_genomes_project 6 66470534 66471639 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079028.1 MGP_C3HHeJ_G0030813.1 mouse_genomes_project 6 101151292 101159358 - MGP_C3HHeJ_P0079028 Gm42688 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015253.1 MGP_C3HHeJ_G0013357.1 mouse_genomes_project 6 83332151 83390138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098533.1 MGP_C3HHeJ_G0036734.1 mouse_genomes_project 6 137824093 137826483 - Gm44366 sense_intronic sense_intronic MGP_C3HHeJ_T0008533.1 MGP_C3HHeJ_G0006890.1 mouse_genomes_project 6 59511440 59511930 + Gm44410 lincRNA lincRNA MGP_C3HHeJ_T0002153.1 MGP_C3HHeJ_G0002074.1 mouse_genomes_project 6 152769577 152773479 - TEC TEC MGP_C3HHeJ_T0076668.1 MGP_C3HHeJ_G0030286.1 mouse_genomes_project 6 36522486 36541355 + MGP_C3HHeJ_P0076668 Clec2l protein_coding protein_coding MGP_C3HHeJ_T0002106.1 MGP_C3HHeJ_G0002027.1 mouse_genomes_project 6 129847311 129849589 - TEC TEC MGP_C3HHeJ_T0015414.1 MGP_C3HHeJ_G0013518.1 mouse_genomes_project 6 129329042 129329489 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079273.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112599957 112628945 + MGP_C3HHeJ_P0079273 Ptcd3 protein_coding protein_coding MGP_C3HHeJ_T0079274.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112599957 112628944 + MGP_C3HHeJ_P0079274 Ptcd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079275.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112599963 112621640 + Ptcd3 protein_coding retained_intron MGP_C3HHeJ_T0079276.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112599989 112610948 + MGP_C3HHeJ_P0079276 Ptcd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079277.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112605243 112606029 + Ptcd3 protein_coding retained_intron MGP_C3HHeJ_T0079278.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112610904 112613918 + Ptcd3 protein_coding retained_intron MGP_C3HHeJ_T0079279.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112612196 112620283 + MGP_C3HHeJ_P0079279 Ptcd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079280.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112619220 112628942 + Ptcd3 protein_coding retained_intron MGP_C3HHeJ_T0079281.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112619295 112623775 + Ptcd3 protein_coding retained_intron MGP_C3HHeJ_T0079282.1 MGP_C3HHeJ_G0030866.1 mouse_genomes_project 6 112626356 112628947 + Ptcd3 protein_coding retained_intron MGP_C3HHeJ_T0079738.1 MGP_C3HHeJ_G0030976.1 mouse_genomes_project 6 126765835 126789365 - MGP_C3HHeJ_P0079738 Cd4 protein_coding protein_coding MGP_C3HHeJ_T0079739.1 MGP_C3HHeJ_G0030976.1 mouse_genomes_project 6 126767388 126816990 - MGP_C3HHeJ_P0079739 Cd4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079740.1 MGP_C3HHeJ_G0030976.1 mouse_genomes_project 6 126767764 126771413 - Cd4 protein_coding processed_transcript MGP_C3HHeJ_T0079741.1 MGP_C3HHeJ_G0030976.1 mouse_genomes_project 6 126767864 126771630 - Cd4 protein_coding processed_transcript MGP_C3HHeJ_T0079742.1 MGP_C3HHeJ_G0030976.1 mouse_genomes_project 6 126768469 126789343 - Cd4 protein_coding retained_intron MGP_C3HHeJ_T0079743.1 MGP_C3HHeJ_G0030976.1 mouse_genomes_project 6 126779876 126789344 - Cd4 protein_coding retained_intron MGP_C3HHeJ_T0018076.1 MGP_C3HHeJ_G0015404.1 mouse_genomes_project 6 118158627 118160446 + 4930597O21Rik processed_transcript bidirectional_promoter_lncRNA MGP_C3HHeJ_T0018077.1 MGP_C3HHeJ_G0015404.1 mouse_genomes_project 6 118159643 118160448 + 4930597O21Rik processed_transcript retained_intron MGP_C3HHeJ_T0076786.1 MGP_C3HHeJ_G0030321.1 mouse_genomes_project 6 39302841 39308576 - MGP_C3HHeJ_P0076786 protein_coding protein_coding MGP_C3HHeJ_T0080161.1 MGP_C3HHeJ_G0031085.1 mouse_genomes_project 6 135354106 135356435 - A630073D07Rik protein_coding processed_transcript MGP_C3HHeJ_T0080162.1 MGP_C3HHeJ_G0031085.1 mouse_genomes_project 6 135354106 135356487 - MGP_C3HHeJ_P0080162 A630073D07Rik protein_coding protein_coding MGP_C3HHeJ_T0080089.1 MGP_C3HHeJ_G0031054.1 mouse_genomes_project 6 131848488 131856429 + MGP_C3HHeJ_P0080089 Klre1 protein_coding protein_coding MGP_C3HHeJ_T0080090.1 MGP_C3HHeJ_G0031054.1 mouse_genomes_project 6 131848825 131856379 + MGP_C3HHeJ_P0080090 Klre1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080091.1 MGP_C3HHeJ_G0031054.1 mouse_genomes_project 6 131853985 131856426 + Klre1 protein_coding retained_intron MGP_C3HHeJ_T0077649.1 MGP_C3HHeJ_G0030546.1 mouse_genomes_project 6 64914785 64947498 + MGP_C3HHeJ_P0077649 Csgalnact2 protein_coding protein_coding MGP_C3HHeJ_T0077650.1 MGP_C3HHeJ_G0030546.1 mouse_genomes_project 6 64924305 64947498 + Csgalnact2 protein_coding retained_intron MGP_C3HHeJ_T0077651.1 MGP_C3HHeJ_G0030546.1 mouse_genomes_project 6 64927519 64945614 + MGP_C3HHeJ_P0077651 Csgalnact2 protein_coding protein_coding MGP_C3HHeJ_T0076871.1 MGP_C3HHeJ_G0030353.1 mouse_genomes_project 6 40615258 40619144 - Tcaf3 protein_coding processed_transcript MGP_C3HHeJ_T0076872.1 MGP_C3HHeJ_G0030353.1 mouse_genomes_project 6 40618727 40628843 - MGP_C3HHeJ_P0076872 Tcaf3 protein_coding protein_coding MGP_C3HHeJ_T0076873.1 MGP_C3HHeJ_G0030353.1 mouse_genomes_project 6 40625620 40629163 - MGP_C3HHeJ_P0076873 Tcaf3 protein_coding protein_coding MGP_C3HHeJ_T0102102.1 MGP_C3HHeJ_G0040067.1 mouse_genomes_project 6 93910958 93911196 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008447.1 MGP_C3HHeJ_G0006832.1 mouse_genomes_project 6 28027924 28031316 + 1700012C14Rik lincRNA lincRNA MGP_C3HHeJ_T0008448.1 MGP_C3HHeJ_G0006832.1 mouse_genomes_project 6 28028781 28031368 + 1700012C14Rik lincRNA lincRNA MGP_C3HHeJ_T0076963.1 MGP_C3HHeJ_G0030383.1 mouse_genomes_project 6 46280272 46292244 + MGP_C3HHeJ_P0076963 Zfp956 protein_coding protein_coding MGP_C3HHeJ_T0076964.1 MGP_C3HHeJ_G0030383.1 mouse_genomes_project 6 46280327 46283142 + Zfp956 protein_coding retained_intron MGP_C3HHeJ_T0076965.1 MGP_C3HHeJ_G0030383.1 mouse_genomes_project 6 46280329 46292241 + MGP_C3HHeJ_P0076965 Zfp956 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008643.1 MGP_C3HHeJ_G0006980.1 mouse_genomes_project 6 128296550 128341368 - Gm10415 lincRNA lincRNA MGP_C3HHeJ_T0079300.1 MGP_C3HHeJ_G0030869.1 mouse_genomes_project 6 112703024 112811684 - MGP_C3HHeJ_P0079300 Reep1 protein_coding protein_coding MGP_C3HHeJ_T0077391.1 MGP_C3HHeJ_G0030488.1 mouse_genomes_project 6 56036808 56038337 + MGP_C3HHeJ_P0077391 Vmn1r14 protein_coding protein_coding MGP_C3HHeJ_T0078637.1 MGP_C3HHeJ_G0030739.1 mouse_genomes_project 6 96656784 96666282 - MGP_C3HHeJ_P0078637 Bmp10 protein_coding protein_coding MGP_C3HHeJ_T0076795.1 MGP_C3HHeJ_G0030327.1 mouse_genomes_project 6 39654846 39673306 - MGP_C3HHeJ_P0076795 Trpv6 protein_coding protein_coding MGP_C3HHeJ_T0076796.1 MGP_C3HHeJ_G0030327.1 mouse_genomes_project 6 39654849 39673306 - MGP_C3HHeJ_P0076796 Trpv6 protein_coding protein_coding MGP_C3HHeJ_T0076797.1 MGP_C3HHeJ_G0030327.1 mouse_genomes_project 6 39657717 39673281 - Trpv6 protein_coding retained_intron MGP_C3HHeJ_T0002066.1 MGP_C3HHeJ_G0001987.1 mouse_genomes_project 6 104283320 104285974 - TEC TEC MGP_C3HHeJ_T0002121.1 MGP_C3HHeJ_G0002042.1 mouse_genomes_project 6 137553728 137554418 + TEC TEC MGP_C3HHeJ_T0076155.1 MGP_C3HHeJ_G0030192.1 mouse_genomes_project 6 21917346 21924998 + MGP_C3HHeJ_P0076155 Lmod2 protein_coding protein_coding MGP_C3HHeJ_T0077396.1 MGP_C3HHeJ_G0030493.1 mouse_genomes_project 6 56198498 56199616 + MGP_C3HHeJ_P0077396 Vmn1r19 protein_coding protein_coding MGP_C3HHeJ_T0002018.1 MGP_C3HHeJ_G0001939.1 mouse_genomes_project 6 93425015 93425528 - TEC TEC MGP_C3HHeJ_T0077228.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51294739 51350032 + MGP_C3HHeJ_P0077228 Tax1bp1 protein_coding protein_coding MGP_C3HHeJ_T0077229.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51294760 51314985 + MGP_C3HHeJ_P0077229 Tax1bp1 protein_coding protein_coding MGP_C3HHeJ_T0077230.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51294773 51313308 + Tax1bp1 protein_coding retained_intron MGP_C3HHeJ_T0077231.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51295229 51315019 + MGP_C3HHeJ_P0077231 Tax1bp1 protein_coding protein_coding MGP_C3HHeJ_T0077232.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51295360 51309064 + MGP_C3HHeJ_P0077232 Tax1bp1 protein_coding protein_coding MGP_C3HHeJ_T0077233.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51323739 51325667 + Tax1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0077234.1 MGP_C3HHeJ_G0030447.1 mouse_genomes_project 6 51340811 51345544 + Tax1bp1 protein_coding retained_intron MGP_C3HHeJ_T0000195.1 MGP_C3HHeJ_G0000149.1 mouse_genomes_project 6 117041927 117042407 - MGP_C3HHeJ_P0000195 Igkv11-125 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000196.1 MGP_C3HHeJ_G0000149.1 mouse_genomes_project 6 117041927 117042407 - MGP_C3HHeJ_P0000196 Igkv11-125 IG_V_gene IG_V_gene MGP_C3HHeJ_T0079032.1 MGP_C3HHeJ_G0030815.1 mouse_genomes_project 6 101172724 101174897 - MGP_C3HHeJ_P0079032 Lbx2 protein_coding protein_coding MGP_C3HHeJ_T0079033.1 MGP_C3HHeJ_G0030815.1 mouse_genomes_project 6 101172871 101173630 - Lbx2 protein_coding processed_transcript MGP_C3HHeJ_T0077324.1 MGP_C3HHeJ_G0030465.1 mouse_genomes_project 6 53862788 53980634 + MGP_C3HHeJ_P0077324 Fam188b protein_coding protein_coding MGP_C3HHeJ_T0077325.1 MGP_C3HHeJ_G0030465.1 mouse_genomes_project 6 53862788 53938713 + MGP_C3HHeJ_P0077325 Fam188b protein_coding protein_coding MGP_C3HHeJ_T0077326.1 MGP_C3HHeJ_G0030465.1 mouse_genomes_project 6 53938242 53978727 + Fam188b protein_coding processed_transcript MGP_C3HHeJ_T0075825.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1665637 1935610 + MGP_C3HHeJ_P0075825 Ppp1r9a protein_coding protein_coding MGP_C3HHeJ_T0075826.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1665694 1848717 + MGP_C3HHeJ_P0075826 Ppp1r9a protein_coding protein_coding MGP_C3HHeJ_T0075827.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1665738 1936241 + MGP_C3HHeJ_P0075827 Ppp1r9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075828.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1666824 1941995 + MGP_C3HHeJ_P0075828 Ppp1r9a protein_coding protein_coding MGP_C3HHeJ_T0075829.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1666855 1777811 + MGP_C3HHeJ_P0075829 Ppp1r9a protein_coding protein_coding MGP_C3HHeJ_T0075830.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1666914 1940857 + Ppp1r9a protein_coding retained_intron MGP_C3HHeJ_T0075831.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1667270 1670270 + MGP_C3HHeJ_P0075831 Ppp1r9a protein_coding protein_coding MGP_C3HHeJ_T0075832.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1668898 1935829 + MGP_C3HHeJ_P0075832 Ppp1r9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075833.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1668898 1935837 + MGP_C3HHeJ_P0075833 Ppp1r9a protein_coding protein_coding MGP_C3HHeJ_T0075834.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1669889 1930270 + MGP_C3HHeJ_P0075834 Ppp1r9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075835.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1882356 1885485 + Ppp1r9a protein_coding processed_transcript MGP_C3HHeJ_T0075836.1 MGP_C3HHeJ_G0030127.1 mouse_genomes_project 6 1885156 1888206 + Ppp1r9a protein_coding retained_intron MGP_C3HHeJ_T0002083.1 MGP_C3HHeJ_G0002004.1 mouse_genomes_project 6 111800776 111804186 + TEC TEC MGP_C3HHeJ_T0010690.1 MGP_C3HHeJ_G0008823.1 mouse_genomes_project 6 66448283 66448353 + Mir7043 miRNA miRNA MGP_C3HHeJ_T0008565.1 MGP_C3HHeJ_G0006918.1 mouse_genomes_project 6 82043712 82062378 - Gm44169 lincRNA lincRNA MGP_C3HHeJ_T0011542.1 MGP_C3HHeJ_G0009675.1 mouse_genomes_project 6 45964484 45964561 + Gm25283 misc_RNA misc_RNA MGP_C3HHeJ_T0015156.1 MGP_C3HHeJ_G0013260.1 mouse_genomes_project 6 47482086 47482393 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000300.1 MGP_C3HHeJ_G0000250.1 mouse_genomes_project 6 117086292 117086759 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0102074.1 MGP_C3HHeJ_G0040039.1 mouse_genomes_project 6 39517287 39518499 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0080520.1 MGP_C3HHeJ_G0031175.1 mouse_genomes_project 6 146091593 146233022 - MGP_C3HHeJ_P0080520 St8sia1 protein_coding protein_coding MGP_C3HHeJ_T0080521.1 MGP_C3HHeJ_G0031175.1 mouse_genomes_project 6 146098284 146232711 - MGP_C3HHeJ_P0080521 St8sia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080522.1 MGP_C3HHeJ_G0031175.1 mouse_genomes_project 6 146098913 146152894 - St8sia1 protein_coding processed_transcript MGP_C3HHeJ_T0000193.1 MGP_C3HHeJ_G0000147.1 mouse_genomes_project 6 117018684 117019151 + MGP_C3HHeJ_P0000193 Igkv9-124 IG_V_gene IG_V_gene MGP_C3HHeJ_T0075868.1 MGP_C3HHeJ_G0030135.1 mouse_genomes_project 6 3391645 3413087 - MGP_C3HHeJ_P0075868 Shfm1 protein_coding protein_coding MGP_C3HHeJ_T0075869.1 MGP_C3HHeJ_G0030135.1 mouse_genomes_project 6 3410871 3413092 - Shfm1 protein_coding retained_intron MGP_C3HHeJ_T0015160.1 MGP_C3HHeJ_G0013264.1 mouse_genomes_project 6 47878223 47879047 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015384.1 MGP_C3HHeJ_G0013488.1 mouse_genomes_project 6 122962609 122962882 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015184.1 MGP_C3HHeJ_G0013288.1 mouse_genomes_project 6 57957360 57959794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078114.1 MGP_C3HHeJ_G0030632.1 mouse_genomes_project 6 76636128 76639026 + Crbn protein_coding retained_intron MGP_C3HHeJ_T0078115.1 MGP_C3HHeJ_G0030632.1 mouse_genomes_project 6 76636131 76656005 + MGP_C3HHeJ_P0078115 Crbn protein_coding protein_coding MGP_C3HHeJ_T0078116.1 MGP_C3HHeJ_G0030632.1 mouse_genomes_project 6 76636140 76656005 + MGP_C3HHeJ_P0078116 Crbn protein_coding protein_coding MGP_C3HHeJ_T0078117.1 MGP_C3HHeJ_G0030632.1 mouse_genomes_project 6 76636144 76647458 + Crbn protein_coding retained_intron MGP_C3HHeJ_T0078118.1 MGP_C3HHeJ_G0030632.1 mouse_genomes_project 6 76637172 76652736 + MGP_C3HHeJ_P0078118 Crbn protein_coding protein_coding MGP_C3HHeJ_T0078932.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100666670 100697219 + MGP_C3HHeJ_P0078932 Stambp protein_coding protein_coding MGP_C3HHeJ_T0078933.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100666959 100668266 + Stambp protein_coding retained_intron MGP_C3HHeJ_T0078934.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100666965 100697226 + MGP_C3HHeJ_P0078934 Stambp protein_coding protein_coding MGP_C3HHeJ_T0078935.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100666971 100697232 + Stambp protein_coding retained_intron MGP_C3HHeJ_T0078936.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100666981 100696681 + MGP_C3HHeJ_P0078936 Stambp protein_coding protein_coding MGP_C3HHeJ_T0078937.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100687243 100697089 + Stambp protein_coding retained_intron MGP_C3HHeJ_T0078938.1 MGP_C3HHeJ_G0030797.1 mouse_genomes_project 6 100687415 100687819 + Stambp protein_coding retained_intron MGP_C3HHeJ_T0080063.1 MGP_C3HHeJ_G0031046.1 mouse_genomes_project 6 131602381 131623887 + MGP_C3HHeJ_P0080063 Clec12a protein_coding protein_coding MGP_C3HHeJ_T0080064.1 MGP_C3HHeJ_G0031046.1 mouse_genomes_project 6 131611276 131616259 + Clec12a protein_coding retained_intron MGP_C3HHeJ_T0080065.1 MGP_C3HHeJ_G0031046.1 mouse_genomes_project 6 131611498 131629779 + MGP_C3HHeJ_P0080065 Clec12a protein_coding protein_coding MGP_C3HHeJ_T0080066.1 MGP_C3HHeJ_G0031046.1 mouse_genomes_project 6 131619436 131628892 + Clec12a protein_coding retained_intron MGP_C3HHeJ_T0004892.1 MGP_C3HHeJ_G0004189.1 mouse_genomes_project 6 53085595 53095075 - Gm44026 antisense antisense MGP_C3HHeJ_T0079401.1 MGP_C3HHeJ_G0030897.1 mouse_genomes_project 6 118576239 118586608 + MGP_C3HHeJ_P0079401 Vmn1r32 protein_coding protein_coding MGP_C3HHeJ_T0015091.1 MGP_C3HHeJ_G0013195.1 mouse_genomes_project 6 19480350 19480828 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076719.1 MGP_C3HHeJ_G0030296.1 mouse_genomes_project 6 37505498 37516350 + MGP_C3HHeJ_P0076719 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010719.1 MGP_C3HHeJ_G0008852.1 mouse_genomes_project 6 122735004 122735083 - Gm24855 miRNA miRNA MGP_C3HHeJ_T0015276.1 MGP_C3HHeJ_G0013380.1 mouse_genomes_project 6 92460418 92462258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076785.1 MGP_C3HHeJ_G0030320.1 mouse_genomes_project 6 39302833 39310671 - MGP_C3HHeJ_P0076785 Try5 protein_coding protein_coding MGP_C3HHeJ_T0076496.1 MGP_C3HHeJ_G0030254.1 mouse_genomes_project 6 32083614 32096708 + MGP_C3HHeJ_P0076496 Akr1b10 protein_coding protein_coding MGP_C3HHeJ_T0076497.1 MGP_C3HHeJ_G0030254.1 mouse_genomes_project 6 32083645 32089347 + Akr1b10 protein_coding retained_intron MGP_C3HHeJ_T0076498.1 MGP_C3HHeJ_G0030254.1 mouse_genomes_project 6 32083677 32096506 + MGP_C3HHeJ_P0076498 Akr1b10 protein_coding protein_coding MGP_C3HHeJ_T0076499.1 MGP_C3HHeJ_G0030254.1 mouse_genomes_project 6 32083677 32096705 + MGP_C3HHeJ_P0076499 Akr1b10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076500.1 MGP_C3HHeJ_G0030254.1 mouse_genomes_project 6 32089366 32090335 + Akr1b10 protein_coding retained_intron MGP_C3HHeJ_T0076501.1 MGP_C3HHeJ_G0030254.1 mouse_genomes_project 6 32091198 32092723 + Akr1b10 protein_coding retained_intron MGP_C3HHeJ_T0004897.1 MGP_C3HHeJ_G0004194.1 mouse_genomes_project 6 62444889 62445593 - Gm20692 antisense antisense MGP_C3HHeJ_T0079283.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112632008 112683041 - MGP_C3HHeJ_P0079283 Immt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079284.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112634132 112683063 - MGP_C3HHeJ_P0079284 Immt protein_coding protein_coding MGP_C3HHeJ_T0079285.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112634135 112639730 - Immt protein_coding retained_intron MGP_C3HHeJ_T0079286.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112634139 112683140 - MGP_C3HHeJ_P0079286 Immt protein_coding protein_coding MGP_C3HHeJ_T0079287.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112634139 112683055 - MGP_C3HHeJ_P0079287 Immt protein_coding protein_coding MGP_C3HHeJ_T0079288.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112634145 112683142 - MGP_C3HHeJ_P0079288 Immt protein_coding protein_coding MGP_C3HHeJ_T0079289.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112634459 112683060 - MGP_C3HHeJ_P0079289 Immt protein_coding protein_coding MGP_C3HHeJ_T0079290.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112635922 112639449 - MGP_C3HHeJ_P0079290 Immt protein_coding protein_coding MGP_C3HHeJ_T0079291.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112636348 112639366 - MGP_C3HHeJ_P0079291 Immt protein_coding protein_coding MGP_C3HHeJ_T0079292.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112637786 112640841 - Immt protein_coding retained_intron MGP_C3HHeJ_T0079293.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112643831 112647292 - Immt protein_coding retained_intron MGP_C3HHeJ_T0079294.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112649666 112683093 - MGP_C3HHeJ_P0079294 Immt protein_coding protein_coding MGP_C3HHeJ_T0079295.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112654735 112683014 - MGP_C3HHeJ_P0079295 Immt protein_coding protein_coding MGP_C3HHeJ_T0079296.1 MGP_C3HHeJ_G0030867.1 mouse_genomes_project 6 112656499 112683094 - Immt protein_coding retained_intron MGP_C3HHeJ_T0077397.1 MGP_C3HHeJ_G0030494.1 mouse_genomes_project 6 56225784 56226839 + MGP_C3HHeJ_P0077397 protein_coding protein_coding MGP_C3HHeJ_T0080172.1 MGP_C3HHeJ_G0031095.1 mouse_genomes_project 6 135637329 135638247 + MGP_C3HHeJ_P0080172 Tas2r116 protein_coding protein_coding MGP_C3HHeJ_T0076713.1 MGP_C3HHeJ_G0030295.1 mouse_genomes_project 6 37493767 37508515 + MGP_C3HHeJ_P0076713 Adck2 protein_coding protein_coding MGP_C3HHeJ_T0076714.1 MGP_C3HHeJ_G0030295.1 mouse_genomes_project 6 37493853 37503817 + MGP_C3HHeJ_P0076714 Adck2 protein_coding protein_coding MGP_C3HHeJ_T0076715.1 MGP_C3HHeJ_G0030295.1 mouse_genomes_project 6 37493858 37507498 + MGP_C3HHeJ_P0076715 Adck2 protein_coding protein_coding MGP_C3HHeJ_T0076716.1 MGP_C3HHeJ_G0030295.1 mouse_genomes_project 6 37494878 37499851 + Adck2 protein_coding retained_intron MGP_C3HHeJ_T0076717.1 MGP_C3HHeJ_G0030295.1 mouse_genomes_project 6 37496273 37501899 + MGP_C3HHeJ_P0076717 Adck2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076718.1 MGP_C3HHeJ_G0030295.1 mouse_genomes_project 6 37503699 37505684 + Adck2 protein_coding retained_intron MGP_C3HHeJ_T0080310.1 MGP_C3HHeJ_G0031132.1 mouse_genomes_project 6 139859345 139885071 - MGP_C3HHeJ_P0080310 Smco3 protein_coding protein_coding MGP_C3HHeJ_T0011574.1 MGP_C3HHeJ_G0009707.1 mouse_genomes_project 6 124258412 124258524 + Gm26168 misc_RNA misc_RNA MGP_C3HHeJ_T0077017.1 MGP_C3HHeJ_G0030392.1 mouse_genomes_project 6 46980799 46981923 + MGP_C3HHeJ_P0077017 protein_coding protein_coding MGP_C3HHeJ_T0077018.1 MGP_C3HHeJ_G0030392.1 mouse_genomes_project 6 46980942 46981857 + protein_coding retained_intron MGP_C3HHeJ_T0001959.1 MGP_C3HHeJ_G0001881.1 mouse_genomes_project 6 56509529 56512371 - TEC TEC MGP_C3HHeJ_T0080728.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152211470 152232754 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0080729.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152211470 152279465 - MGP_C3HHeJ_P0080729 Ipo8 protein_coding protein_coding MGP_C3HHeJ_T0080730.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152211480 152216392 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0080731.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152217069 152219482 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0080732.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152217677 152225425 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0080733.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152227364 152243591 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0080734.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152233708 152270702 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0080735.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152246700 152264010 - Ipo8 protein_coding processed_transcript MGP_C3HHeJ_T0080736.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152246701 152279462 - MGP_C3HHeJ_P0080736 Ipo8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080737.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152246703 152279424 - MGP_C3HHeJ_P0080737 Ipo8 protein_coding protein_coding MGP_C3HHeJ_T0080738.1 MGP_C3HHeJ_G0031208.1 mouse_genomes_project 6 152265539 152268446 - Ipo8 protein_coding retained_intron MGP_C3HHeJ_T0001907.1 MGP_C3HHeJ_G0001829.1 mouse_genomes_project 6 27715096 27717318 + TEC TEC MGP_C3HHeJ_T0008437.1 MGP_C3HHeJ_G0006825.1 mouse_genomes_project 6 16317285 16349382 - 4930524B17Rik lincRNA lincRNA MGP_C3HHeJ_T0010684.1 MGP_C3HHeJ_G0008817.1 mouse_genomes_project 6 54203288 54203398 + Gm44352 miRNA miRNA MGP_C3HHeJ_T0079156.1 MGP_C3HHeJ_G0030844.1 mouse_genomes_project 6 111144716 111177718 - MGP_C3HHeJ_P0079156 Suclg1 protein_coding protein_coding MGP_C3HHeJ_T0079157.1 MGP_C3HHeJ_G0030844.1 mouse_genomes_project 6 111144723 111177440 - MGP_C3HHeJ_P0079157 Suclg1 protein_coding protein_coding MGP_C3HHeJ_T0079158.1 MGP_C3HHeJ_G0030844.1 mouse_genomes_project 6 111161097 111177448 - MGP_C3HHeJ_P0079158 Suclg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079159.1 MGP_C3HHeJ_G0030844.1 mouse_genomes_project 6 111161101 111165842 - Suclg1 protein_coding retained_intron MGP_C3HHeJ_T0079160.1 MGP_C3HHeJ_G0030844.1 mouse_genomes_project 6 111162322 111177432 - Suclg1 protein_coding retained_intron MGP_C3HHeJ_T0079161.1 MGP_C3HHeJ_G0030844.1 mouse_genomes_project 6 111168672 111177439 - Suclg1 protein_coding processed_transcript MGP_C3HHeJ_T0076819.1 MGP_C3HHeJ_G0030337.1 mouse_genomes_project 6 40164473 40165433 + MGP_C3HHeJ_P0076819 Tas2r139 protein_coding protein_coding MGP_C3HHeJ_T0077635.1 MGP_C3HHeJ_G0030542.1 mouse_genomes_project 6 64569274 64587084 + MGP_C3HHeJ_P0077635 Zfp9 protein_coding protein_coding MGP_C3HHeJ_T0077636.1 MGP_C3HHeJ_G0030542.1 mouse_genomes_project 6 64580677 64582265 + Zfp9 protein_coding retained_intron MGP_C3HHeJ_T0075999.1 MGP_C3HHeJ_G0030162.1 mouse_genomes_project 6 13815473 13883208 - MGP_C3HHeJ_P0075999 Tfec protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076000.1 MGP_C3HHeJ_G0030162.1 mouse_genomes_project 6 13816038 13851811 - MGP_C3HHeJ_P0076000 Tfec protein_coding protein_coding MGP_C3HHeJ_T0076001.1 MGP_C3HHeJ_G0030162.1 mouse_genomes_project 6 13816778 13817350 - MGP_C3HHeJ_P0076001 Tfec protein_coding protein_coding MGP_C3HHeJ_T0076002.1 MGP_C3HHeJ_G0030162.1 mouse_genomes_project 6 13823509 13883250 - Tfec protein_coding retained_intron MGP_C3HHeJ_T0076003.1 MGP_C3HHeJ_G0030162.1 mouse_genomes_project 6 13826290 13828090 - Tfec protein_coding retained_intron MGP_C3HHeJ_T0077293.1 MGP_C3HHeJ_G0030458.1 mouse_genomes_project 6 53318037 53340257 + MGP_C3HHeJ_P0077293 Mturn protein_coding protein_coding MGP_C3HHeJ_T0077294.1 MGP_C3HHeJ_G0030458.1 mouse_genomes_project 6 53318167 53337548 + MGP_C3HHeJ_P0077294 Mturn protein_coding protein_coding MGP_C3HHeJ_T0077295.1 MGP_C3HHeJ_G0030458.1 mouse_genomes_project 6 53318215 53325935 + Mturn protein_coding retained_intron MGP_C3HHeJ_T0004966.1 MGP_C3HHeJ_G0004238.1 mouse_genomes_project 6 99293010 99296884 - Gm44012 antisense antisense MGP_C3HHeJ_T0099526.1 MGP_C3HHeJ_G0037720.1 mouse_genomes_project 6 70763139 70763242 - Gm27944 snRNA snRNA MGP_C3HHeJ_T0080504.1 MGP_C3HHeJ_G0031171.1 mouse_genomes_project 6 145829579 145836347 - MGP_C3HHeJ_P0080504 Kcnj8 protein_coding protein_coding MGP_C3HHeJ_T0080505.1 MGP_C3HHeJ_G0031171.1 mouse_genomes_project 6 145829581 145836104 - MGP_C3HHeJ_P0080505 Kcnj8 protein_coding protein_coding MGP_C3HHeJ_T0015436.1 MGP_C3HHeJ_G0013540.1 mouse_genomes_project 6 134496376 134496586 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015321.1 MGP_C3HHeJ_G0013425.1 mouse_genomes_project 6 112402191 112403293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099535.1 MGP_C3HHeJ_G0037729.1 mouse_genomes_project 6 100520495 100520592 - Gm25054 snRNA snRNA MGP_C3HHeJ_T0015435.1 MGP_C3HHeJ_G0013539.1 mouse_genomes_project 6 134184538 134184651 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100792.1 MGP_C3HHeJ_G0038986.1 mouse_genomes_project 6 125380505 125380637 + Gm25891 snoRNA snoRNA MGP_C3HHeJ_T0000186.1 MGP_C3HHeJ_G0000141.1 mouse_genomes_project 6 116671971 116672709 - MGP_C3HHeJ_P0000186 Igkv1-117 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000173.1 MGP_C3HHeJ_G0000132.1 mouse_genomes_project 6 116167527 116167998 + MGP_C3HHeJ_P0000173 Igkv10-94 IG_V_gene IG_V_gene MGP_C3HHeJ_T0078243.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86578317 86618957 + MGP_C3HHeJ_P0078243 Eogt protein_coding protein_coding MGP_C3HHeJ_T0078244.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86578572 86616980 + MGP_C3HHeJ_P0078244 Eogt protein_coding protein_coding MGP_C3HHeJ_T0078245.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86578575 86582176 + MGP_C3HHeJ_P0078245 Eogt protein_coding protein_coding MGP_C3HHeJ_T0078246.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86578616 86617009 + Eogt protein_coding processed_transcript MGP_C3HHeJ_T0078247.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86578639 86582230 + MGP_C3HHeJ_P0078247 Eogt protein_coding protein_coding MGP_C3HHeJ_T0078248.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86579705 86583520 + MGP_C3HHeJ_P0078248 Eogt protein_coding protein_coding MGP_C3HHeJ_T0078249.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86579715 86593109 + MGP_C3HHeJ_P0078249 Eogt protein_coding protein_coding MGP_C3HHeJ_T0078250.1 MGP_C3HHeJ_G0030656.1 mouse_genomes_project 6 86609595 86616795 + Eogt protein_coding processed_transcript MGP_C3HHeJ_T0098531.1 MGP_C3HHeJ_G0036732.1 mouse_genomes_project 6 130447484 130448867 - Gm44190 sense_intronic sense_intronic MGP_C3HHeJ_T0015381.1 MGP_C3HHeJ_G0013485.1 mouse_genomes_project 6 122046819 122047510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010668.1 MGP_C3HHeJ_G0008801.1 mouse_genomes_project 6 27711650 27711756 - Mir96 miRNA miRNA MGP_C3HHeJ_T0078273.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89154244 89264488 - MGP_C3HHeJ_P0078273 Slc25a26 protein_coding protein_coding MGP_C3HHeJ_T0078274.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89154244 89264450 - MGP_C3HHeJ_P0078274 Slc25a26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078275.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89154862 89264486 - MGP_C3HHeJ_P0078275 Slc25a26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078276.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89155054 89228225 - Slc25a26 protein_coding processed_transcript MGP_C3HHeJ_T0078277.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89155334 89181419 - Slc25a26 protein_coding processed_transcript MGP_C3HHeJ_T0078278.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89162779 89257268 - MGP_C3HHeJ_P0078278 Slc25a26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078279.1 MGP_C3HHeJ_G0030664.1 mouse_genomes_project 6 89253985 89264270 - Slc25a26 protein_coding processed_transcript MGP_C3HHeJ_T0015287.1 MGP_C3HHeJ_G0013391.1 mouse_genomes_project 6 99039367 99040307 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098169.1 MGP_C3HHeJ_G0036381.1 mouse_genomes_project 6 143524627 143524731 + n-R5s168 rRNA rRNA MGP_C3HHeJ_T0080177.1 MGP_C3HHeJ_G0031100.1 mouse_genomes_project 6 135739647 135740683 - MGP_C3HHeJ_P0080177 Tas2r131 protein_coding protein_coding MGP_C3HHeJ_T0076485.1 MGP_C3HHeJ_G0030251.1 mouse_genomes_project 6 31844956 31868686 - MGP_C3HHeJ_P0076485 Slc35b4 protein_coding protein_coding MGP_C3HHeJ_T0076486.1 MGP_C3HHeJ_G0030251.1 mouse_genomes_project 6 31848299 31855057 - Slc35b4 protein_coding retained_intron MGP_C3HHeJ_T0076487.1 MGP_C3HHeJ_G0030251.1 mouse_genomes_project 6 31849661 31868545 - Slc35b4 protein_coding retained_intron MGP_C3HHeJ_T0076488.1 MGP_C3HHeJ_G0030251.1 mouse_genomes_project 6 31852094 31868657 - MGP_C3HHeJ_P0076488 Slc35b4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100791.1 MGP_C3HHeJ_G0038985.1 mouse_genomes_project 6 125217580 125217712 + Gm25065 snoRNA snoRNA MGP_C3HHeJ_T0100802.1 MGP_C3HHeJ_G0038996.1 mouse_genomes_project 6 133935214 133935348 - Gm22362 snoRNA snoRNA MGP_C3HHeJ_T0001972.1 MGP_C3HHeJ_G0001893.1 mouse_genomes_project 6 67543776 67544190 - TEC TEC MGP_C3HHeJ_T0099550.1 MGP_C3HHeJ_G0037744.1 mouse_genomes_project 6 132179503 132179577 + Gm23977 snRNA snRNA MGP_C3HHeJ_T0078416.1 MGP_C3HHeJ_G0030690.1 mouse_genomes_project 6 93463545 93476203 - MGP_C3HHeJ_P0078416 Klf15 protein_coding protein_coding MGP_C3HHeJ_T0078417.1 MGP_C3HHeJ_G0030690.1 mouse_genomes_project 6 93463545 93476105 - MGP_C3HHeJ_P0078417 Klf15 protein_coding protein_coding MGP_C3HHeJ_T0078418.1 MGP_C3HHeJ_G0030690.1 mouse_genomes_project 6 93463548 93473475 - MGP_C3HHeJ_P0078418 Klf15 protein_coding protein_coding MGP_C3HHeJ_T0078419.1 MGP_C3HHeJ_G0030690.1 mouse_genomes_project 6 93463548 93472379 - MGP_C3HHeJ_P0078419 Klf15 protein_coding protein_coding MGP_C3HHeJ_T0078420.1 MGP_C3HHeJ_G0030690.1 mouse_genomes_project 6 93463563 93471661 - MGP_C3HHeJ_P0078420 Klf15 protein_coding protein_coding MGP_C3HHeJ_T0075894.1 MGP_C3HHeJ_G0030143.1 mouse_genomes_project 6 5038358 5065755 + MGP_C3HHeJ_P0075894 Mios protein_coding protein_coding MGP_C3HHeJ_T0075895.1 MGP_C3HHeJ_G0030143.1 mouse_genomes_project 6 5055766 5065749 + Mios protein_coding retained_intron MGP_C3HHeJ_T0075896.1 MGP_C3HHeJ_G0030143.1 mouse_genomes_project 6 5058636 5065749 + Mios protein_coding retained_intron MGP_C3HHeJ_T0015175.1 MGP_C3HHeJ_G0013279.1 mouse_genomes_project 6 52383186 52383943 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080696.1 MGP_C3HHeJ_G0031202.1 mouse_genomes_project 6 150493715 150519060 + MGP_C3HHeJ_P0080696 Klhl42 protein_coding protein_coding MGP_C3HHeJ_T0080697.1 MGP_C3HHeJ_G0031202.1 mouse_genomes_project 6 150511595 150514454 + Klhl42 protein_coding processed_transcript MGP_C3HHeJ_T0080698.1 MGP_C3HHeJ_G0031202.1 mouse_genomes_project 6 150514374 150516877 + MGP_C3HHeJ_P0080698 Klhl42 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079206.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013046 112020679 + MGP_C3HHeJ_P0079206 Mat2a protein_coding protein_coding MGP_C3HHeJ_T0079207.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013048 112013803 + Mat2a protein_coding retained_intron MGP_C3HHeJ_T0079208.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013048 112020679 + MGP_C3HHeJ_P0079208 Mat2a protein_coding protein_coding MGP_C3HHeJ_T0079209.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013048 112018067 + MGP_C3HHeJ_P0079209 Mat2a protein_coding protein_coding MGP_C3HHeJ_T0079210.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013056 112015210 + Mat2a protein_coding processed_transcript MGP_C3HHeJ_T0079211.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013061 112015864 + Mat2a protein_coding retained_intron MGP_C3HHeJ_T0079212.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013064 112016195 + Mat2a protein_coding retained_intron MGP_C3HHeJ_T0079213.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112013216 112016801 + MGP_C3HHeJ_P0079213 Mat2a protein_coding protein_coding MGP_C3HHeJ_T0079214.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112017535 112019581 + MGP_C3HHeJ_P0079214 Mat2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079215.1 MGP_C3HHeJ_G0030854.1 mouse_genomes_project 6 112017620 112020678 + MGP_C3HHeJ_P0079215 Mat2a protein_coding protein_coding MGP_C3HHeJ_T0076454.1 MGP_C3HHeJ_G0030245.1 mouse_genomes_project 6 29151556 29197108 - MGP_C3HHeJ_P0076454 Podxl protein_coding protein_coding MGP_C3HHeJ_T0076455.1 MGP_C3HHeJ_G0030245.1 mouse_genomes_project 6 29155059 29156379 - Podxl protein_coding processed_transcript MGP_C3HHeJ_T0079475.1 MGP_C3HHeJ_G0030911.1 mouse_genomes_project 6 122586766 122590406 + MGP_C3HHeJ_P0079475 Pex26 protein_coding protein_coding MGP_C3HHeJ_T0079476.1 MGP_C3HHeJ_G0030911.1 mouse_genomes_project 6 122586853 122600998 + MGP_C3HHeJ_P0079476 Pex26 protein_coding protein_coding MGP_C3HHeJ_T0079477.1 MGP_C3HHeJ_G0030911.1 mouse_genomes_project 6 122586862 122590046 + Pex26 protein_coding retained_intron MGP_C3HHeJ_T0079478.1 MGP_C3HHeJ_G0030911.1 mouse_genomes_project 6 122587229 122598428 + MGP_C3HHeJ_P0079478 Pex26 protein_coding protein_coding MGP_C3HHeJ_T0001992.1 MGP_C3HHeJ_G0001913.1 mouse_genomes_project 6 82294493 82297178 + TEC TEC MGP_C3HHeJ_T0002108.1 MGP_C3HHeJ_G0002029.1 mouse_genomes_project 6 129882947 129885714 - TEC TEC MGP_C3HHeJ_T0076166.1 MGP_C3HHeJ_G0030197.1 mouse_genomes_project 6 22181825 22223467 + MGP_C3HHeJ_P0076166 Hyal5 protein_coding protein_coding MGP_C3HHeJ_T0076167.1 MGP_C3HHeJ_G0030197.1 mouse_genomes_project 6 22207550 22223314 + MGP_C3HHeJ_P0076167 Hyal5 protein_coding protein_coding MGP_C3HHeJ_T0076168.1 MGP_C3HHeJ_G0030197.1 mouse_genomes_project 6 22222045 22223254 + Hyal5 protein_coding processed_transcript MGP_C3HHeJ_T0078451.1 MGP_C3HHeJ_G0030705.1 mouse_genomes_project 6 94095657 94096765 - MGP_C3HHeJ_P0078451 Vmn1r44 protein_coding protein_coding MGP_C3HHeJ_T0078453.1 MGP_C3HHeJ_G0030705.1 mouse_genomes_project 6 94096457 94106348 - MGP_C3HHeJ_P0078453 Vmn1r44 protein_coding protein_coding MGP_C3HHeJ_T0076923.1 MGP_C3HHeJ_G0030375.1 mouse_genomes_project 6 43228164 45611823 + MGP_C3HHeJ_P0076923 protein_coding protein_coding MGP_C3HHeJ_T0076924.1 MGP_C3HHeJ_G0030375.1 mouse_genomes_project 6 44411996 44678494 + protein_coding processed_transcript MGP_C3HHeJ_T0076925.1 MGP_C3HHeJ_G0030375.1 mouse_genomes_project 6 45550051 45611819 + MGP_C3HHeJ_P0076925 protein_coding protein_coding MGP_C3HHeJ_T0076926.1 MGP_C3HHeJ_G0030375.1 mouse_genomes_project 6 45550117 45607184 + MGP_C3HHeJ_P0076926 protein_coding protein_coding MGP_C3HHeJ_T0076494.1 MGP_C3HHeJ_G0030253.1 mouse_genomes_project 6 32052249 32066594 + MGP_C3HHeJ_P0076494 Akr1b8 protein_coding protein_coding MGP_C3HHeJ_T0076495.1 MGP_C3HHeJ_G0030253.1 mouse_genomes_project 6 32054245 32063370 + Akr1b8 protein_coding processed_transcript MGP_C3HHeJ_T0015172.1 MGP_C3HHeJ_G0013276.1 mouse_genomes_project 6 51427672 51428265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078441.1 MGP_C3HHeJ_G0030698.1 mouse_genomes_project 6 93809302 93834811 - MGP_C3HHeJ_P0078441 protein_coding protein_coding MGP_C3HHeJ_T0079362.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117735843 117766909 - MGP_C3HHeJ_P0079362 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079363.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117749238 117766522 - MGP_C3HHeJ_P0079363 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079364.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117749243 117766550 - MGP_C3HHeJ_P0079364 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079365.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117749483 117766528 - MGP_C3HHeJ_P0079365 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079366.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117749494 117766522 - MGP_C3HHeJ_P0079366 Serbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079367.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117749494 117766523 - MGP_C3HHeJ_P0079367 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079368.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117749527 117766462 - MGP_C3HHeJ_P0079368 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079369.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117751710 117761653 - Serbp1 protein_coding retained_intron MGP_C3HHeJ_T0079370.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117751727 117766203 - MGP_C3HHeJ_P0079370 Serbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079371.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117755750 117766495 - MGP_C3HHeJ_P0079371 Serbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079372.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117758926 117766517 - Serbp1 protein_coding retained_intron MGP_C3HHeJ_T0079373.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117759521 117766522 - Serbp1 protein_coding retained_intron MGP_C3HHeJ_T0079374.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117760676 117766276 - MGP_C3HHeJ_P0079374 Serbp1 protein_coding protein_coding MGP_C3HHeJ_T0079375.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117761291 117766454 - Serbp1 protein_coding retained_intron MGP_C3HHeJ_T0079376.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117762259 117796926 - Serbp1 protein_coding processed_transcript MGP_C3HHeJ_T0079377.1 MGP_C3HHeJ_G0030887.1 mouse_genomes_project 6 117764178 117766545 - Serbp1 protein_coding retained_intron MGP_C3HHeJ_T0015319.1 MGP_C3HHeJ_G0013423.1 mouse_genomes_project 6 111437634 111438220 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077364.1 MGP_C3HHeJ_G0030475.1 mouse_genomes_project 6 55489004 55509793 - MGP_C3HHeJ_P0077364 Kbtbd2 protein_coding protein_coding MGP_C3HHeJ_T0077365.1 MGP_C3HHeJ_G0030475.1 mouse_genomes_project 6 55489005 55509870 - MGP_C3HHeJ_P0077365 Kbtbd2 protein_coding protein_coding MGP_C3HHeJ_T0077366.1 MGP_C3HHeJ_G0030475.1 mouse_genomes_project 6 55500858 55509336 - MGP_C3HHeJ_P0077366 Kbtbd2 protein_coding protein_coding MGP_C3HHeJ_T0077367.1 MGP_C3HHeJ_G0030475.1 mouse_genomes_project 6 55501003 55508228 - Kbtbd2 protein_coding processed_transcript MGP_C3HHeJ_T0076393.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28113067 28137522 + MGP_C3HHeJ_P0076393 Cpa2 protein_coding protein_coding MGP_C3HHeJ_T0076394.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28113127 28115958 + Cpa2 protein_coding retained_intron MGP_C3HHeJ_T0076395.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28113155 28118596 + Cpa2 protein_coding processed_transcript MGP_C3HHeJ_T0076396.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28114693 28116478 + Cpa2 protein_coding retained_intron MGP_C3HHeJ_T0076397.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28115401 28124179 + Cpa2 protein_coding retained_intron MGP_C3HHeJ_T0076398.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28115970 28121408 + Cpa2 protein_coding retained_intron MGP_C3HHeJ_T0076399.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28118127 28118641 + Cpa2 protein_coding processed_transcript MGP_C3HHeJ_T0076400.1 MGP_C3HHeJ_G0030235.1 mouse_genomes_project 6 28124025 28137294 + Cpa2 protein_coding retained_intron MGP_C3HHeJ_T0099514.1 MGP_C3HHeJ_G0037708.1 mouse_genomes_project 6 40365190 40365297 - Gm24611 snRNA snRNA MGP_C3HHeJ_T0078775.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98217631 98234129 - MGP_C3HHeJ_P0078775 Tprkb protein_coding unknown_likely_coding MGP_C3HHeJ_T0078776.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98219401 98231837 - MGP_C3HHeJ_P0078776 Tprkb protein_coding protein_coding MGP_C3HHeJ_T0078777.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98219826 98231846 - MGP_C3HHeJ_P0078777 Tprkb protein_coding protein_coding MGP_C3HHeJ_T0078778.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98219981 98231786 - MGP_C3HHeJ_P0078778 Tprkb protein_coding protein_coding MGP_C3HHeJ_T0078779.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98220030 98231827 - MGP_C3HHeJ_P0078779 Tprkb protein_coding protein_coding MGP_C3HHeJ_T0078780.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98220313 98231865 - MGP_C3HHeJ_P0078780 Tprkb protein_coding protein_coding MGP_C3HHeJ_T0078781.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98223305 98231828 - Tprkb protein_coding processed_transcript MGP_C3HHeJ_T0078782.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98223544 98235676 - Tprkb protein_coding processed_transcript MGP_C3HHeJ_T0078783.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98231538 98233502 - Tprkb protein_coding retained_intron MGP_C3HHeJ_T0078786.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98231972 98235692 - Tprkb protein_coding processed_transcript MGP_C3HHeJ_T0078788.1 MGP_C3HHeJ_G0030764.1 mouse_genomes_project 6 98232358 98235718 - Tprkb protein_coding processed_transcript MGP_C3HHeJ_T0079789.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126952479 126961851 + MGP_C3HHeJ_P0079789 Ing4 protein_coding protein_coding MGP_C3HHeJ_T0079790.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126952555 126959028 + Ing4 protein_coding retained_intron MGP_C3HHeJ_T0079791.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126952555 126962113 + MGP_C3HHeJ_P0079791 Ing4 protein_coding protein_coding MGP_C3HHeJ_T0079792.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126952567 126960421 + Ing4 protein_coding retained_intron MGP_C3HHeJ_T0079793.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126952580 126961657 + Ing4 protein_coding retained_intron MGP_C3HHeJ_T0079794.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126952580 126962114 + MGP_C3HHeJ_P0079794 Ing4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079795.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126956399 126960855 + Ing4 protein_coding retained_intron MGP_C3HHeJ_T0079796.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126958364 126962114 + Ing4 protein_coding retained_intron MGP_C3HHeJ_T0079797.1 MGP_C3HHeJ_G0030983.1 mouse_genomes_project 6 126960488 126961467 + Ing4 protein_coding retained_intron MGP_C3HHeJ_T0002095.1 MGP_C3HHeJ_G0002016.1 mouse_genomes_project 6 113692745 113695189 + TEC TEC MGP_C3HHeJ_T0001968.1 MGP_C3HHeJ_G0001889.1 mouse_genomes_project 6 65959425 65960270 - TEC TEC MGP_C3HHeJ_T0008610.1 MGP_C3HHeJ_G0006953.1 mouse_genomes_project 6 101392104 101395431 + 2310069B03Rik lincRNA lincRNA MGP_C3HHeJ_T0008611.1 MGP_C3HHeJ_G0006953.1 mouse_genomes_project 6 101392104 101396094 + 2310069B03Rik lincRNA lincRNA MGP_C3HHeJ_T0008612.1 MGP_C3HHeJ_G0006953.1 mouse_genomes_project 6 101392125 101394537 + 2310069B03Rik lincRNA lincRNA MGP_C3HHeJ_T0015405.1 MGP_C3HHeJ_G0013509.1 mouse_genomes_project 6 127191878 127192176 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078159.1 MGP_C3HHeJ_G0030640.1 mouse_genomes_project 6 82732350 82747628 - MGP_C3HHeJ_P0078159 protein_coding protein_coding MGP_C3HHeJ_T0078160.1 MGP_C3HHeJ_G0030640.1 mouse_genomes_project 6 82732439 82747679 - protein_coding retained_intron MGP_C3HHeJ_T0078084.1 MGP_C3HHeJ_G0030625.1 mouse_genomes_project 6 74533540 74567059 - MGP_C3HHeJ_P0078084 Edem1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078085.1 MGP_C3HHeJ_G0030625.1 mouse_genomes_project 6 74533548 74567026 - MGP_C3HHeJ_P0078085 Edem1 protein_coding protein_coding MGP_C3HHeJ_T0078086.1 MGP_C3HHeJ_G0030625.1 mouse_genomes_project 6 74537353 74540505 - Edem1 protein_coding retained_intron MGP_C3HHeJ_T0078087.1 MGP_C3HHeJ_G0030625.1 mouse_genomes_project 6 74541253 74544930 - Edem1 protein_coding retained_intron MGP_C3HHeJ_T0078088.1 MGP_C3HHeJ_G0030625.1 mouse_genomes_project 6 74551256 74557911 - Edem1 protein_coding processed_transcript MGP_C3HHeJ_T0079751.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837424 126843301 + Mlf2 protein_coding retained_intron MGP_C3HHeJ_T0079752.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837443 126840448 + Mlf2 protein_coding retained_intron MGP_C3HHeJ_T0079753.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837443 126838727 + Mlf2 protein_coding retained_intron MGP_C3HHeJ_T0079754.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837463 126840442 + MGP_C3HHeJ_P0079754 Mlf2 protein_coding protein_coding MGP_C3HHeJ_T0079755.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837470 126842208 + MGP_C3HHeJ_P0079755 Mlf2 protein_coding protein_coding MGP_C3HHeJ_T0079756.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837514 126842207 + MGP_C3HHeJ_P0079756 Mlf2 protein_coding protein_coding MGP_C3HHeJ_T0079757.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126837948 126840434 + MGP_C3HHeJ_P0079757 Mlf2 protein_coding protein_coding MGP_C3HHeJ_T0079758.1 MGP_C3HHeJ_G0030979.1 mouse_genomes_project 6 126838662 126841356 + Mlf2 protein_coding retained_intron MGP_C3HHeJ_T0077394.1 MGP_C3HHeJ_G0030491.1 mouse_genomes_project 6 56159690 56160670 - MGP_C3HHeJ_P0077394 Vmn1r17 protein_coding protein_coding MGP_C3HHeJ_T0080433.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143837970 143894370 + MGP_C3HHeJ_P0080433 Aebp2 protein_coding protein_coding MGP_C3HHeJ_T0080434.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143837976 143870402 + MGP_C3HHeJ_P0080434 Aebp2 protein_coding protein_coding MGP_C3HHeJ_T0080435.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143838579 143892007 + MGP_C3HHeJ_P0080435 Aebp2 protein_coding protein_coding MGP_C3HHeJ_T0080436.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143839190 143866847 + MGP_C3HHeJ_P0080436 Aebp2 protein_coding protein_coding MGP_C3HHeJ_T0080437.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143841161 143867929 + MGP_C3HHeJ_P0080437 Aebp2 protein_coding protein_coding MGP_C3HHeJ_T0080438.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143850896 143852327 + Aebp2 protein_coding retained_intron MGP_C3HHeJ_T0080439.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143851910 143869521 + MGP_C3HHeJ_P0080439 Aebp2 protein_coding protein_coding MGP_C3HHeJ_T0080440.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143858355 143867133 + Aebp2 protein_coding processed_transcript MGP_C3HHeJ_T0080441.1 MGP_C3HHeJ_G0031153.1 mouse_genomes_project 6 143861919 143863493 + Aebp2 protein_coding processed_transcript MGP_C3HHeJ_T0015262.1 MGP_C3HHeJ_G0013366.1 mouse_genomes_project 6 88490332 88494547 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078232.1 MGP_C3HHeJ_G0030652.1 mouse_genomes_project 6 86470791 86485937 + MGP_C3HHeJ_P0078232 Lmod3 protein_coding protein_coding MGP_C3HHeJ_T0001955.1 MGP_C3HHeJ_G0001877.1 mouse_genomes_project 6 53549229 53552537 + TEC TEC MGP_C3HHeJ_T0079773.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126920629 126948929 + Zfp384 protein_coding retained_intron MGP_C3HHeJ_T0079774.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126920655 126950351 + MGP_C3HHeJ_P0079774 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079775.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126920703 126950351 + Zfp384 protein_coding retained_intron MGP_C3HHeJ_T0079776.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126920714 126950579 + MGP_C3HHeJ_P0079776 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079777.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126920753 126944659 + Zfp384 protein_coding processed_transcript MGP_C3HHeJ_T0079778.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126920760 126950474 + MGP_C3HHeJ_P0079778 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079779.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921150 126950584 + MGP_C3HHeJ_P0079779 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079780.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921194 126936305 + Zfp384 protein_coding processed_transcript MGP_C3HHeJ_T0079781.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921196 126936451 + MGP_C3HHeJ_P0079781 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079782.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921216 126950351 + MGP_C3HHeJ_P0079782 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079783.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921217 126950351 + MGP_C3HHeJ_P0079783 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079784.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921226 126945542 + Zfp384 protein_coding retained_intron MGP_C3HHeJ_T0079785.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921286 126950351 + MGP_C3HHeJ_P0079785 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079786.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126921873 126950351 + MGP_C3HHeJ_P0079786 Zfp384 protein_coding protein_coding MGP_C3HHeJ_T0079787.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126936324 126945538 + Zfp384 protein_coding retained_intron MGP_C3HHeJ_T0079788.1 MGP_C3HHeJ_G0030982.1 mouse_genomes_project 6 126943158 126950531 + Zfp384 protein_coding retained_intron MGP_C3HHeJ_T0076636.1 MGP_C3HHeJ_G0030281.1 mouse_genomes_project 6 36216215 36267476 + MGP_C3HHeJ_P0076636 Ttc26 protein_coding protein_coding MGP_C3HHeJ_T0076637.1 MGP_C3HHeJ_G0030281.1 mouse_genomes_project 6 36216271 36229885 + MGP_C3HHeJ_P0076637 Ttc26 protein_coding protein_coding MGP_C3HHeJ_T0076638.1 MGP_C3HHeJ_G0030281.1 mouse_genomes_project 6 36216271 36267476 + MGP_C3HHeJ_P0076638 Ttc26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076639.1 MGP_C3HHeJ_G0030281.1 mouse_genomes_project 6 36216275 36233065 + MGP_C3HHeJ_P0076639 Ttc26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076640.1 MGP_C3HHeJ_G0030281.1 mouse_genomes_project 6 36226249 36230223 + Ttc26 protein_coding retained_intron MGP_C3HHeJ_T0000188.1 MGP_C3HHeJ_G0000143.1 mouse_genomes_project 6 116685108 116685589 - MGP_C3HHeJ_P0000188 Igkv14-111 IG_V_gene IG_V_gene MGP_C3HHeJ_T0077465.1 MGP_C3HHeJ_G0030517.1 mouse_genomes_project 6 59813384 59814479 - MGP_C3HHeJ_P0077465 Mageb16 protein_coding protein_coding MGP_C3HHeJ_T0077837.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68135196 68149637 + Tamm41 protein_coding retained_intron MGP_C3HHeJ_T0077838.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68135196 68173397 + MGP_C3HHeJ_P0077838 Tamm41 protein_coding protein_coding MGP_C3HHeJ_T0077839.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68135217 68162109 + MGP_C3HHeJ_P0077839 Tamm41 protein_coding protein_coding MGP_C3HHeJ_T0077840.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68135247 68158104 + MGP_C3HHeJ_P0077840 Tamm41 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077841.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68141163 68142151 + Tamm41 protein_coding processed_transcript MGP_C3HHeJ_T0077842.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68141164 68163482 + MGP_C3HHeJ_P0077842 Tamm41 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077843.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68157931 68169614 + Tamm41 protein_coding retained_intron MGP_C3HHeJ_T0077844.1 MGP_C3HHeJ_G0030584.1 mouse_genomes_project 6 68161788 68173390 + Tamm41 protein_coding retained_intron MGP_C3HHeJ_T0076085.1 MGP_C3HHeJ_G0030176.1 mouse_genomes_project 6 18984088 19076016 - MGP_C3HHeJ_P0076085 Tspan12 protein_coding protein_coding MGP_C3HHeJ_T0076086.1 MGP_C3HHeJ_G0030176.1 mouse_genomes_project 6 18984088 19076442 - MGP_C3HHeJ_P0076086 Tspan12 protein_coding protein_coding MGP_C3HHeJ_T0076087.1 MGP_C3HHeJ_G0030176.1 mouse_genomes_project 6 19009511 19075909 - MGP_C3HHeJ_P0076087 Tspan12 protein_coding protein_coding MGP_C3HHeJ_T0076088.1 MGP_C3HHeJ_G0030176.1 mouse_genomes_project 6 19018158 19075842 - MGP_C3HHeJ_P0076088 Tspan12 protein_coding protein_coding MGP_C3HHeJ_T0076089.1 MGP_C3HHeJ_G0030176.1 mouse_genomes_project 6 19058493 19076097 - MGP_C3HHeJ_P0076089 Tspan12 protein_coding protein_coding MGP_C3HHeJ_T0076090.1 MGP_C3HHeJ_G0030176.1 mouse_genomes_project 6 19074932 19075756 - MGP_C3HHeJ_P0076090 Tspan12 protein_coding protein_coding MGP_C3HHeJ_T0077673.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65236650 65241370 - MGP_C3HHeJ_P0077673 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077674.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65236650 65241335 - MGP_C3HHeJ_P0077674 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077675.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65236651 65241374 - MGP_C3HHeJ_P0077675 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077676.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65237031 65239354 - Zfp637 protein_coding retained_intron MGP_C3HHeJ_T0077677.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65237087 65241435 - MGP_C3HHeJ_P0077677 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077678.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65237193 65241348 - MGP_C3HHeJ_P0077678 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077679.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65237193 65241348 - MGP_C3HHeJ_P0077679 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077680.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65237193 65241335 - MGP_C3HHeJ_P0077680 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077681.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65237394 65241436 - MGP_C3HHeJ_P0077681 Zfp637 protein_coding protein_coding MGP_C3HHeJ_T0077682.1 MGP_C3HHeJ_G0030551.1 mouse_genomes_project 6 65238088 65241436 - Zfp637 protein_coding retained_intron MGP_C3HHeJ_T0080178.1 MGP_C3HHeJ_G0031101.1 mouse_genomes_project 6 135819796 135820724 - MGP_C3HHeJ_P0080178 Tas2r103 protein_coding protein_coding MGP_C3HHeJ_T0008655.1 MGP_C3HHeJ_G0006992.1 mouse_genomes_project 6 131457362 131491368 - 2310001H17Rik lincRNA lincRNA MGP_C3HHeJ_T0008656.1 MGP_C3HHeJ_G0006992.1 mouse_genomes_project 6 131464422 131487409 - 2310001H17Rik lincRNA lincRNA MGP_C3HHeJ_T0008657.1 MGP_C3HHeJ_G0006992.1 mouse_genomes_project 6 131468045 131491411 - 2310001H17Rik lincRNA lincRNA MGP_C3HHeJ_T0008658.1 MGP_C3HHeJ_G0006992.1 mouse_genomes_project 6 131484358 131492145 - 2310001H17Rik lincRNA lincRNA MGP_C3HHeJ_T0008659.1 MGP_C3HHeJ_G0006992.1 mouse_genomes_project 6 131484418 131491902 - 2310001H17Rik lincRNA lincRNA MGP_C3HHeJ_T0008660.1 MGP_C3HHeJ_G0006992.1 mouse_genomes_project 6 131484523 131487418 - 2310001H17Rik lincRNA lincRNA MGP_C3HHeJ_T0002139.1 MGP_C3HHeJ_G0002060.1 mouse_genomes_project 6 148608612 148611173 - TEC TEC MGP_C3HHeJ_T0015099.1 MGP_C3HHeJ_G0013203.1 mouse_genomes_project 6 21441522 21443583 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001978.1 MGP_C3HHeJ_G0001899.1 mouse_genomes_project 6 70194853 70196979 + TEC TEC MGP_C3HHeJ_T0010657.1 MGP_C3HHeJ_G0008790.1 mouse_genomes_project 6 441212 441297 - Mir653 miRNA miRNA MGP_C3HHeJ_T0015067.1 MGP_C3HHeJ_G0013171.1 mouse_genomes_project 6 9474210 9475915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102097.1 MGP_C3HHeJ_G0040062.1 mouse_genomes_project 6 57366450 57366744 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079124.1 MGP_C3HHeJ_G0030833.1 mouse_genomes_project 6 105835967 105838571 + MGP_C3HHeJ_P0079124 Reg3g protein_coding protein_coding MGP_C3HHeJ_T0079125.1 MGP_C3HHeJ_G0030833.1 mouse_genomes_project 6 105836268 105838571 + Reg3g protein_coding retained_intron MGP_C3HHeJ_T0010669.1 MGP_C3HHeJ_G0008802.1 mouse_genomes_project 6 27711872 27711942 - Mir183 miRNA miRNA MGP_C3HHeJ_T0079506.1 MGP_C3HHeJ_G0030918.1 mouse_genomes_project 6 123312368 123472419 + MGP_C3HHeJ_P0079506 Mug1 protein_coding protein_coding MGP_C3HHeJ_T0079508.1 MGP_C3HHeJ_G0030918.1 mouse_genomes_project 6 123312405 123527298 + Mug1 protein_coding retained_intron MGP_C3HHeJ_T0079509.1 MGP_C3HHeJ_G0030918.1 mouse_genomes_project 6 123314007 123315490 + Mug1 protein_coding retained_intron MGP_C3HHeJ_T0079510.1 MGP_C3HHeJ_G0030918.1 mouse_genomes_project 6 123314930 123323565 + Mug1 protein_coding retained_intron MGP_C3HHeJ_T0079511.1 MGP_C3HHeJ_G0030918.1 mouse_genomes_project 6 123468938 123471965 + Mug1 protein_coding retained_intron MGP_C3HHeJ_T0002136.1 MGP_C3HHeJ_G0002057.1 mouse_genomes_project 6 144685701 144689245 + TEC TEC MGP_C3HHeJ_T0015122.1 MGP_C3HHeJ_G0013226.1 mouse_genomes_project 6 37574233 37574749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015411.1 MGP_C3HHeJ_G0013515.1 mouse_genomes_project 6 129210853 129211373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008544.1 MGP_C3HHeJ_G0006901.1 mouse_genomes_project 6 65481493 65513202 + Gm45083 lincRNA lincRNA MGP_C3HHeJ_T0002010.1 MGP_C3HHeJ_G0001931.1 mouse_genomes_project 6 92000340 92001388 + TEC TEC MGP_C3HHeJ_T0080040.1 MGP_C3HHeJ_G0031038.1 mouse_genomes_project 6 131069037 131129843 - MGP_C3HHeJ_P0080040 BC035044 protein_coding protein_coding MGP_C3HHeJ_T0080167.1 MGP_C3HHeJ_G0031090.1 mouse_genomes_project 6 135505594 135506638 + MGP_C3HHeJ_P0080167 Tas2r102 protein_coding protein_coding MGP_C3HHeJ_T0102135.1 MGP_C3HHeJ_G0040099.1 mouse_genomes_project 6 135609240 135610142 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004935.1 MGP_C3HHeJ_G0004219.1 mouse_genomes_project 6 92754336 92754880 + Gm14573 antisense antisense MGP_C3HHeJ_T0079263.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112525643 112551465 - MGP_C3HHeJ_P0079263 Polr1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079264.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112528092 112599647 - MGP_C3HHeJ_P0079264 Polr1a protein_coding protein_coding MGP_C3HHeJ_T0079265.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112552489 112599655 - MGP_C3HHeJ_P0079265 Polr1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079266.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112552604 112596853 - Polr1a protein_coding retained_intron MGP_C3HHeJ_T0079267.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112552803 112559262 - MGP_C3HHeJ_P0079267 Polr1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079268.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112557861 112559261 - Polr1a protein_coding retained_intron MGP_C3HHeJ_T0079269.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112565951 112571309 - Polr1a protein_coding processed_transcript MGP_C3HHeJ_T0079270.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112575520 112576105 - Polr1a protein_coding retained_intron MGP_C3HHeJ_T0079271.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112580596 112581214 - Polr1a protein_coding retained_intron MGP_C3HHeJ_T0079272.1 MGP_C3HHeJ_G0030865.1 mouse_genomes_project 6 112585966 112599639 - Polr1a protein_coding retained_intron MGP_C3HHeJ_T0078928.1 MGP_C3HHeJ_G0030794.1 mouse_genomes_project 6 100503788 100530602 - MGP_C3HHeJ_P0078928 Vax2 protein_coding protein_coding MGP_C3HHeJ_T0080157.1 MGP_C3HHeJ_G0031081.1 mouse_genomes_project 6 134260180 134261144 - MGP_C3HHeJ_P0080157 Tas2r105 protein_coding protein_coding MGP_C3HHeJ_T0077918.1 MGP_C3HHeJ_G0030596.1 mouse_genomes_project 6 69603994 69616181 - MGP_C3HHeJ_P0077918 Brk1 protein_coding protein_coding MGP_C3HHeJ_T0079394.1 MGP_C3HHeJ_G0030890.1 mouse_genomes_project 6 118247107 118248339 + MGP_C3HHeJ_P0079394 Vmn1r39 protein_coding protein_coding MGP_C3HHeJ_T0015220.1 MGP_C3HHeJ_G0013324.1 mouse_genomes_project 6 70255746 70256221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008569.1 MGP_C3HHeJ_G0006922.1 mouse_genomes_project 6 83639303 83663318 + Gm44290 lincRNA lincRNA MGP_C3HHeJ_T0076951.1 MGP_C3HHeJ_G0030378.1 mouse_genomes_project 6 46125269 46142509 - MGP_C3HHeJ_P0076951 Pdia4 protein_coding protein_coding MGP_C3HHeJ_T0076952.1 MGP_C3HHeJ_G0030378.1 mouse_genomes_project 6 46136067 46142443 - Pdia4 protein_coding processed_transcript MGP_C3HHeJ_T0015142.1 MGP_C3HHeJ_G0013246.1 mouse_genomes_project 6 44882365 44883356 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008474.1 MGP_C3HHeJ_G0006851.1 mouse_genomes_project 6 32230713 32238456 + Gm13860 lincRNA lincRNA MGP_C3HHeJ_T0080620.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149476500 149896978 - MGP_C3HHeJ_P0080620 Itpr2 protein_coding protein_coding MGP_C3HHeJ_T0080621.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149479720 149896712 - MGP_C3HHeJ_P0080621 Itpr2 protein_coding protein_coding MGP_C3HHeJ_T0080622.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149489020 149521022 - Itpr2 protein_coding processed_transcript MGP_C3HHeJ_T0080623.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149554957 149602880 - MGP_C3HHeJ_P0080623 Itpr2 protein_coding protein_coding MGP_C3HHeJ_T0080624.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149555032 149572366 - Itpr2 protein_coding processed_transcript MGP_C3HHeJ_T0080625.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149606378 149607882 - Itpr2 protein_coding retained_intron MGP_C3HHeJ_T0080626.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149670738 149674529 - Itpr2 protein_coding retained_intron MGP_C3HHeJ_T0080627.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149739219 149782534 - MGP_C3HHeJ_P0080627 Itpr2 protein_coding protein_coding MGP_C3HHeJ_T0080628.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149756033 149897023 - MGP_C3HHeJ_P0080628 Itpr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080629.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149765451 149896978 - Itpr2 protein_coding retained_intron MGP_C3HHeJ_T0080630.1 MGP_C3HHeJ_G0031189.1 mouse_genomes_project 6 149809060 149896678 - Itpr2 protein_coding processed_transcript MGP_C3HHeJ_T0015325.1 MGP_C3HHeJ_G0013429.1 mouse_genomes_project 6 112852764 112853348 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080694.1 MGP_C3HHeJ_G0031201.1 mouse_genomes_project 6 150472049 150488522 - MGP_C3HHeJ_P0080694 Mansc4 protein_coding protein_coding MGP_C3HHeJ_T0080695.1 MGP_C3HHeJ_G0031201.1 mouse_genomes_project 6 150482920 150488491 - MGP_C3HHeJ_P0080695 Mansc4 protein_coding protein_coding MGP_C3HHeJ_T0080171.1 MGP_C3HHeJ_G0031094.1 mouse_genomes_project 6 135628386 135629388 + MGP_C3HHeJ_P0080171 Tas2r123 protein_coding protein_coding MGP_C3HHeJ_T0079405.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119214900 119216820 - Prdm5 protein_coding retained_intron MGP_C3HHeJ_T0079406.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119215534 119381291 - MGP_C3HHeJ_P0079406 Prdm5 protein_coding protein_coding MGP_C3HHeJ_T0079407.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119215537 119381257 - MGP_C3HHeJ_P0079407 Prdm5 protein_coding protein_coding MGP_C3HHeJ_T0079408.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119215612 119381254 - MGP_C3HHeJ_P0079408 Prdm5 protein_coding protein_coding MGP_C3HHeJ_T0079409.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119215776 119381118 - MGP_C3HHeJ_P0079409 Prdm5 protein_coding protein_coding MGP_C3HHeJ_T0079410.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119323890 119381257 - Prdm5 protein_coding retained_intron MGP_C3HHeJ_T0079411.1 MGP_C3HHeJ_G0030900.1 mouse_genomes_project 6 119377017 119381185 - Prdm5 protein_coding retained_intron MGP_C3HHeJ_T0008534.1 MGP_C3HHeJ_G0006891.1 mouse_genomes_project 6 59619765 59624177 + Gm35386 lincRNA lincRNA MGP_C3HHeJ_T0015475.1 MGP_C3HHeJ_G0013579.1 mouse_genomes_project 6 152131685 152132293 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010700.1 MGP_C3HHeJ_G0008833.1 mouse_genomes_project 6 84168059 84168171 + Gm22328 miRNA miRNA MGP_C3HHeJ_T0004928.1 MGP_C3HHeJ_G0004217.1 mouse_genomes_project 6 90563823 90909263 - antisense antisense MGP_C3HHeJ_T0004929.1 MGP_C3HHeJ_G0004217.1 mouse_genomes_project 6 90563825 90909010 - antisense antisense MGP_C3HHeJ_T0004930.1 MGP_C3HHeJ_G0004217.1 mouse_genomes_project 6 90563913 90909223 - antisense antisense MGP_C3HHeJ_T0004931.1 MGP_C3HHeJ_G0004217.1 mouse_genomes_project 6 90694745 90909010 - antisense antisense MGP_C3HHeJ_T0004932.1 MGP_C3HHeJ_G0004217.1 mouse_genomes_project 6 90731854 90909010 - antisense antisense MGP_C3HHeJ_T0004933.1 MGP_C3HHeJ_G0004217.1 mouse_genomes_project 6 90732136 90909014 - antisense antisense MGP_C3HHeJ_T0002058.1 MGP_C3HHeJ_G0001979.1 mouse_genomes_project 6 102392752 102394288 + TEC TEC MGP_C3HHeJ_T0079605.1 MGP_C3HHeJ_G0030948.1 mouse_genomes_project 6 125547359 125883259 + MGP_C3HHeJ_P0079605 Vmn2r24 protein_coding protein_coding MGP_C3HHeJ_T0002037.1 MGP_C3HHeJ_G0001958.1 mouse_genomes_project 6 96754531 96757235 + TEC TEC MGP_C3HHeJ_T0015453.1 MGP_C3HHeJ_G0013557.1 mouse_genomes_project 6 139491359 139491753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078105.1 MGP_C3HHeJ_G0030629.1 mouse_genomes_project 6 75214822 75297005 + MGP_C3HHeJ_P0078105 Sumf1 protein_coding protein_coding MGP_C3HHeJ_T0078106.1 MGP_C3HHeJ_G0030629.1 mouse_genomes_project 6 75214848 75295557 + MGP_C3HHeJ_P0078106 Sumf1 protein_coding protein_coding MGP_C3HHeJ_T0078107.1 MGP_C3HHeJ_G0030629.1 mouse_genomes_project 6 75214848 75295557 + MGP_C3HHeJ_P0078107 Sumf1 protein_coding protein_coding MGP_C3HHeJ_T0078108.1 MGP_C3HHeJ_G0030629.1 mouse_genomes_project 6 75248085 75255808 + Sumf1 protein_coding retained_intron MGP_C3HHeJ_T0078109.1 MGP_C3HHeJ_G0030629.1 mouse_genomes_project 6 75255425 75284409 + MGP_C3HHeJ_P0078109 Sumf1 protein_coding protein_coding MGP_C3HHeJ_T0078110.1 MGP_C3HHeJ_G0030629.1 mouse_genomes_project 6 75272790 75295686 + Sumf1 protein_coding processed_transcript MGP_C3HHeJ_T0015089.1 MGP_C3HHeJ_G0013193.1 mouse_genomes_project 6 18128491 18129044 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002132.1 MGP_C3HHeJ_G0002053.1 mouse_genomes_project 6 143496428 143497422 - TEC TEC MGP_C3HHeJ_T0077398.1 MGP_C3HHeJ_G0030495.1 mouse_genomes_project 6 56225831 56226738 + MGP_C3HHeJ_P0077398 protein_coding protein_coding MGP_C3HHeJ_T0011543.1 MGP_C3HHeJ_G0009676.1 mouse_genomes_project 6 46108719 46108821 + Rny3 misc_RNA misc_RNA MGP_C3HHeJ_T0015307.1 MGP_C3HHeJ_G0013411.1 mouse_genomes_project 6 105820618 105821590 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001937.1 MGP_C3HHeJ_G0001859.1 mouse_genomes_project 6 44285699 44289637 + TEC TEC MGP_C3HHeJ_T0015137.1 MGP_C3HHeJ_G0013241.1 mouse_genomes_project 6 41917048 41917794 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015328.1 MGP_C3HHeJ_G0013432.1 mouse_genomes_project 6 114185260 114186606 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002104.1 MGP_C3HHeJ_G0002025.1 mouse_genomes_project 6 129374408 129374778 - TEC TEC MGP_C3HHeJ_T0100794.1 MGP_C3HHeJ_G0038988.1 mouse_genomes_project 6 125577958 125578075 - Gm23079 snoRNA snoRNA MGP_C3HHeJ_T0076149.1 MGP_C3HHeJ_G0030190.1 mouse_genomes_project 6 21832330 21836531 - Ndufa5 protein_coding retained_intron MGP_C3HHeJ_T0076150.1 MGP_C3HHeJ_G0030190.1 mouse_genomes_project 6 21832330 21841235 - MGP_C3HHeJ_P0076150 Ndufa5 protein_coding protein_coding MGP_C3HHeJ_T0076151.1 MGP_C3HHeJ_G0030190.1 mouse_genomes_project 6 21832330 21841678 - MGP_C3HHeJ_P0076151 Ndufa5 protein_coding protein_coding MGP_C3HHeJ_T0076152.1 MGP_C3HHeJ_G0030190.1 mouse_genomes_project 6 21832331 21841191 - Ndufa5 protein_coding processed_transcript MGP_C3HHeJ_T0004870.1 MGP_C3HHeJ_G0004175.1 mouse_genomes_project 6 40356226 40379035 - Gm44284 antisense antisense MGP_C3HHeJ_T0001917.1 MGP_C3HHeJ_G0001839.1 mouse_genomes_project 6 37955514 37957228 + TEC TEC MGP_C3HHeJ_T0015191.1 MGP_C3HHeJ_G0013295.1 mouse_genomes_project 6 61394551 61394860 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010709.1 MGP_C3HHeJ_G0008842.1 mouse_genomes_project 6 98833673 98833755 + Mir705 miRNA miRNA MGP_C3HHeJ_T0015309.1 MGP_C3HHeJ_G0013413.1 mouse_genomes_project 6 107883766 107884241 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077666.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65208678 65219047 - MGP_C3HHeJ_P0077666 Zfp239 protein_coding protein_coding MGP_C3HHeJ_T0077667.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65209204 65219047 - MGP_C3HHeJ_P0077667 Zfp239 protein_coding protein_coding MGP_C3HHeJ_T0077668.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65211191 65220024 - Zfp239 protein_coding processed_transcript MGP_C3HHeJ_T0077669.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65211230 65219047 - Zfp239 protein_coding processed_transcript MGP_C3HHeJ_T0077670.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65211235 65219040 - Zfp239 protein_coding processed_transcript MGP_C3HHeJ_T0077671.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65211502 65219040 - Zfp239 protein_coding processed_transcript MGP_C3HHeJ_T0077672.1 MGP_C3HHeJ_G0030550.1 mouse_genomes_project 6 65212957 65219040 - Zfp239 protein_coding retained_intron MGP_C3HHeJ_T0080132.1 MGP_C3HHeJ_G0031072.1 mouse_genomes_project 6 133772395 133795190 - MGP_C3HHeJ_P0080132 Klra2 protein_coding protein_coding MGP_C3HHeJ_T0080133.1 MGP_C3HHeJ_G0031072.1 mouse_genomes_project 6 133773168 133795190 - MGP_C3HHeJ_P0080133 Klra2 protein_coding protein_coding MGP_C3HHeJ_T0011549.1 MGP_C3HHeJ_G0009682.1 mouse_genomes_project 6 50797297 50797393 + Gm28032 misc_RNA misc_RNA MGP_C3HHeJ_T0079633.1 MGP_C3HHeJ_G0030959.1 mouse_genomes_project 6 126379056 126400023 - MGP_C3HHeJ_P0079633 protein_coding protein_coding MGP_C3HHeJ_T0000284.1 MGP_C3HHeJ_G0000234.1 mouse_genomes_project 6 116158119 116158844 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0100807.1 MGP_C3HHeJ_G0039001.1 mouse_genomes_project 6 148741547 148741634 + Gm23498 snoRNA snoRNA MGP_C3HHeJ_T0079593.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124934097 124942179 - MGP_C3HHeJ_P0079593 Clec4e protein_coding protein_coding MGP_C3HHeJ_T0079594.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124934257 124942178 - Clec4e protein_coding retained_intron MGP_C3HHeJ_T0079595.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124934453 124942179 - Clec4e protein_coding retained_intron MGP_C3HHeJ_T0079596.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124934976 124942179 - Clec4e protein_coding retained_intron MGP_C3HHeJ_T0079597.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124935799 124942179 - MGP_C3HHeJ_P0079597 Clec4e protein_coding protein_coding MGP_C3HHeJ_T0079598.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124936002 124942175 - MGP_C3HHeJ_P0079598 Clec4e protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079599.1 MGP_C3HHeJ_G0030942.1 mouse_genomes_project 6 124940085 124942179 - Clec4e protein_coding processed_transcript MGP_C3HHeJ_T0098530.1 MGP_C3HHeJ_G0036731.1 mouse_genomes_project 6 127120295 127120576 - Gm28967 sense_intronic sense_intronic MGP_C3HHeJ_T0015425.1 MGP_C3HHeJ_G0013529.1 mouse_genomes_project 6 131122584 131123284 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010687.1 MGP_C3HHeJ_G0008820.1 mouse_genomes_project 6 62959496 62959580 + Mir706 miRNA miRNA MGP_C3HHeJ_T0080173.1 MGP_C3HHeJ_G0031096.1 mouse_genomes_project 6 135651370 135652372 + MGP_C3HHeJ_P0080173 Tas2r110 protein_coding protein_coding MGP_C3HHeJ_T0008651.1 MGP_C3HHeJ_G0006988.1 mouse_genomes_project 6 130708778 130711172 - Gm44009 lincRNA lincRNA MGP_C3HHeJ_T0001919.1 MGP_C3HHeJ_G0001841.1 mouse_genomes_project 6 38156848 38159675 + TEC TEC MGP_C3HHeJ_T0010693.1 MGP_C3HHeJ_G0008826.1 mouse_genomes_project 6 69502650 69502708 - Mir7042 miRNA miRNA MGP_C3HHeJ_T0015422.1 MGP_C3HHeJ_G0013526.1 mouse_genomes_project 6 130803783 130804273 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100790.1 MGP_C3HHeJ_G0038984.1 mouse_genomes_project 6 125101422 125101554 - Gm22722 snoRNA snoRNA MGP_C3HHeJ_T0078952.1 MGP_C3HHeJ_G0030800.1 mouse_genomes_project 6 100781633 100837982 + MGP_C3HHeJ_P0078952 Tet3 protein_coding protein_coding MGP_C3HHeJ_T0078953.1 MGP_C3HHeJ_G0030800.1 mouse_genomes_project 6 100784325 100874516 + MGP_C3HHeJ_P0078953 Tet3 protein_coding protein_coding MGP_C3HHeJ_T0078954.1 MGP_C3HHeJ_G0030800.1 mouse_genomes_project 6 100799646 100844008 + Tet3 protein_coding processed_transcript MGP_C3HHeJ_T0078955.1 MGP_C3HHeJ_G0030800.1 mouse_genomes_project 6 100799692 100804528 + Tet3 protein_coding retained_intron MGP_C3HHeJ_T0078956.1 MGP_C3HHeJ_G0030800.1 mouse_genomes_project 6 100800061 100874516 + MGP_C3HHeJ_P0078956 Tet3 protein_coding protein_coding MGP_C3HHeJ_T0098528.1 MGP_C3HHeJ_G0036729.1 mouse_genomes_project 6 97120688 97121336 - Gm44091 sense_intronic sense_intronic MGP_C3HHeJ_T0076766.1 MGP_C3HHeJ_G0030309.1 mouse_genomes_project 6 38508728 38509789 + MGP_C3HHeJ_P0076766 Olfr460 protein_coding protein_coding MGP_C3HHeJ_T0080291.1 MGP_C3HHeJ_G0031127.1 mouse_genomes_project 6 139624038 139673801 - MGP_C3HHeJ_P0080291 Plbd1 protein_coding protein_coding MGP_C3HHeJ_T0080292.1 MGP_C3HHeJ_G0031127.1 mouse_genomes_project 6 139625276 139673746 - Plbd1 protein_coding retained_intron MGP_C3HHeJ_T0080293.1 MGP_C3HHeJ_G0031127.1 mouse_genomes_project 6 139625849 139644625 - Plbd1 protein_coding retained_intron MGP_C3HHeJ_T0080294.1 MGP_C3HHeJ_G0031127.1 mouse_genomes_project 6 139650940 139673436 - MGP_C3HHeJ_P0080294 Plbd1 protein_coding protein_coding MGP_C3HHeJ_T0080340.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140591924 140765071 - MGP_C3HHeJ_P0080340 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080341.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140592347 140687367 - MGP_C3HHeJ_P0080341 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080342.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140592857 140765071 - MGP_C3HHeJ_P0080342 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080343.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140614864 140764086 - MGP_C3HHeJ_P0080343 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080344.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140629589 140634943 - Eps8 protein_coding processed_transcript MGP_C3HHeJ_T0080345.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140632341 140771466 - MGP_C3HHeJ_P0080345 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080346.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140632365 140634886 - Eps8 protein_coding retained_intron MGP_C3HHeJ_T0080347.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140638226 140705419 - MGP_C3HHeJ_P0080347 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080348.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140642991 140765015 - Eps8 protein_coding processed_transcript MGP_C3HHeJ_T0080349.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140650528 140653736 - Eps8 protein_coding retained_intron MGP_C3HHeJ_T0080350.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140653285 140764086 - MGP_C3HHeJ_P0080350 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080351.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140654983 140765028 - MGP_C3HHeJ_P0080351 Eps8 protein_coding protein_coding MGP_C3HHeJ_T0080352.1 MGP_C3HHeJ_G0031140.1 mouse_genomes_project 6 140683493 140687109 - Eps8 protein_coding retained_intron MGP_C3HHeJ_T0015085.1 MGP_C3HHeJ_G0013189.1 mouse_genomes_project 6 16391295 16392686 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079404.1 MGP_C3HHeJ_G0030899.1 mouse_genomes_project 6 119197896 119199302 - MGP_C3HHeJ_P0079404 4930544G11Rik protein_coding protein_coding MGP_C3HHeJ_T0077431.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57490689 57587137 + MGP_C3HHeJ_P0077431 Abcg2 protein_coding protein_coding MGP_C3HHeJ_T0077432.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57517910 57619655 + MGP_C3HHeJ_P0077432 Abcg2 protein_coding protein_coding MGP_C3HHeJ_T0077433.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57562438 57587384 + Abcg2 protein_coding retained_intron MGP_C3HHeJ_T0077434.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57562452 57616824 + MGP_C3HHeJ_P0077434 Abcg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077435.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57562452 57587845 + MGP_C3HHeJ_P0077435 Abcg2 protein_coding protein_coding MGP_C3HHeJ_T0077436.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57562456 57616466 + MGP_C3HHeJ_P0077436 Abcg2 protein_coding protein_coding MGP_C3HHeJ_T0077437.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57562456 57614499 + MGP_C3HHeJ_P0077437 Abcg2 protein_coding protein_coding MGP_C3HHeJ_T0077438.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57562474 57587845 + MGP_C3HHeJ_P0077438 Abcg2 protein_coding protein_coding MGP_C3HHeJ_T0077439.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57586015 57587353 + Abcg2 protein_coding retained_intron MGP_C3HHeJ_T0077440.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57597850 57616330 + MGP_C3HHeJ_P0077440 Abcg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077441.1 MGP_C3HHeJ_G0030510.1 mouse_genomes_project 6 57601628 57608584 + Abcg2 protein_coding retained_intron MGP_C3HHeJ_T0076789.1 MGP_C3HHeJ_G0030324.1 mouse_genomes_project 6 39452146 39455764 + MGP_C3HHeJ_P0076789 Try10 protein_coding protein_coding MGP_C3HHeJ_T0079935.1 MGP_C3HHeJ_G0031013.1 mouse_genomes_project 6 129114936 129123428 + MGP_C3HHeJ_P0079935 Fgf23 protein_coding protein_coding MGP_C3HHeJ_T0008679.1 MGP_C3HHeJ_G0007005.1 mouse_genomes_project 6 146241936 146242374 + lincRNA lincRNA MGP_C3HHeJ_T0015252.1 MGP_C3HHeJ_G0013356.1 mouse_genomes_project 6 82973824 82974246 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077943.1 MGP_C3HHeJ_G0030602.1 mouse_genomes_project 6 69742683 69754367 - MGP_C3HHeJ_P0077943 Il17rc protein_coding protein_coding MGP_C3HHeJ_T0077944.1 MGP_C3HHeJ_G0030602.1 mouse_genomes_project 6 69742683 69755734 - MGP_C3HHeJ_P0077944 Il17rc protein_coding protein_coding MGP_C3HHeJ_T0077945.1 MGP_C3HHeJ_G0030602.1 mouse_genomes_project 6 69747867 69750581 - Il17rc protein_coding retained_intron MGP_C3HHeJ_T0077946.1 MGP_C3HHeJ_G0030602.1 mouse_genomes_project 6 69750424 69752914 - MGP_C3HHeJ_P0077946 Il17rc protein_coding protein_coding MGP_C3HHeJ_T0077947.1 MGP_C3HHeJ_G0030602.1 mouse_genomes_project 6 69750730 69754878 - MGP_C3HHeJ_P0077947 Il17rc protein_coding protein_coding MGP_C3HHeJ_T0077700.1 MGP_C3HHeJ_G0030557.1 mouse_genomes_project 6 66539384 66542453 - MGP_C3HHeJ_P0077700 Olfr214 protein_coding protein_coding MGP_C3HHeJ_T0077701.1 MGP_C3HHeJ_G0030557.1 mouse_genomes_project 6 66539384 66540392 - MGP_C3HHeJ_P0077701 Olfr214 protein_coding protein_coding MGP_C3HHeJ_T0077961.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807850 69811872 + MGP_C3HHeJ_P0077961 Rpusd3 protein_coding protein_coding MGP_C3HHeJ_T0077962.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807859 69809968 + MGP_C3HHeJ_P0077962 Rpusd3 protein_coding protein_coding MGP_C3HHeJ_T0077963.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807867 69808887 + Rpusd3 protein_coding retained_intron MGP_C3HHeJ_T0077964.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807871 69810402 + Rpusd3 protein_coding retained_intron MGP_C3HHeJ_T0077965.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807871 69811862 + MGP_C3HHeJ_P0077965 Rpusd3 protein_coding protein_coding MGP_C3HHeJ_T0077966.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807871 69811085 + MGP_C3HHeJ_P0077966 Rpusd3 protein_coding protein_coding MGP_C3HHeJ_T0077967.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807876 69810297 + MGP_C3HHeJ_P0077967 Rpusd3 protein_coding protein_coding MGP_C3HHeJ_T0077968.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69807880 69810881 + MGP_C3HHeJ_P0077968 Rpusd3 protein_coding protein_coding MGP_C3HHeJ_T0077969.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69808142 69809995 + Rpusd3 protein_coding retained_intron MGP_C3HHeJ_T0077970.1 MGP_C3HHeJ_G0030606.1 mouse_genomes_project 6 69810738 69811643 + Rpusd3 protein_coding retained_intron MGP_C3HHeJ_T0002077.1 MGP_C3HHeJ_G0001998.1 mouse_genomes_project 6 108821530 108822895 + TEC TEC MGP_C3HHeJ_T0078421.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93504616 93513859 + MGP_C3HHeJ_P0078421 Cfap100 protein_coding protein_coding MGP_C3HHeJ_T0078422.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93504626 93531262 + MGP_C3HHeJ_P0078422 Cfap100 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078423.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93504828 93505518 + Cfap100 protein_coding processed_transcript MGP_C3HHeJ_T0078424.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93504978 93513646 + MGP_C3HHeJ_P0078424 Cfap100 protein_coding protein_coding MGP_C3HHeJ_T0078425.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93504981 93531005 + MGP_C3HHeJ_P0078425 Cfap100 protein_coding protein_coding MGP_C3HHeJ_T0078426.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93504993 93531004 + MGP_C3HHeJ_P0078426 Cfap100 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078427.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93505000 93531003 + MGP_C3HHeJ_P0078427 Cfap100 protein_coding protein_coding MGP_C3HHeJ_T0078428.1 MGP_C3HHeJ_G0030691.1 mouse_genomes_project 6 93505018 93506930 + MGP_C3HHeJ_P0078428 Cfap100 protein_coding protein_coding MGP_C3HHeJ_T0076527.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32491862 32559811 + Agbl3 protein_coding retained_intron MGP_C3HHeJ_T0076528.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32491862 32570942 + MGP_C3HHeJ_P0076528 Agbl3 protein_coding protein_coding MGP_C3HHeJ_T0076529.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32491862 32570942 + MGP_C3HHeJ_P0076529 Agbl3 protein_coding protein_coding MGP_C3HHeJ_T0076530.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32491872 32515894 + MGP_C3HHeJ_P0076530 Agbl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076531.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32491882 32511147 + Agbl3 protein_coding retained_intron MGP_C3HHeJ_T0076532.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32492278 32572470 + MGP_C3HHeJ_P0076532 Agbl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076533.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32492305 32517737 + Agbl3 protein_coding retained_intron MGP_C3HHeJ_T0076534.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32492305 32497147 + MGP_C3HHeJ_P0076534 Agbl3 protein_coding protein_coding MGP_C3HHeJ_T0076535.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32492306 32513715 + Agbl3 protein_coding retained_intron MGP_C3HHeJ_T0076536.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32492319 32497072 + MGP_C3HHeJ_P0076536 Agbl3 protein_coding protein_coding MGP_C3HHeJ_T0076537.1 MGP_C3HHeJ_G0030258.1 mouse_genomes_project 6 32492320 32497111 + MGP_C3HHeJ_P0076537 Agbl3 protein_coding protein_coding MGP_C3HHeJ_T0099539.1 MGP_C3HHeJ_G0037733.1 mouse_genomes_project 6 113526993 113527148 + Gm23485 snRNA snRNA MGP_C3HHeJ_T0078668.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97094618 97248090 - MGP_C3HHeJ_P0078668 Aak1 protein_coding protein_coding MGP_C3HHeJ_T0078669.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97101181 97102846 - Aak1 protein_coding processed_transcript MGP_C3HHeJ_T0078670.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97101637 97130530 - Aak1 protein_coding processed_transcript MGP_C3HHeJ_T0078671.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97101960 97138764 - MGP_C3HHeJ_P0078671 Aak1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078672.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97105992 97247554 - MGP_C3HHeJ_P0078672 Aak1 protein_coding protein_coding MGP_C3HHeJ_T0078673.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97109827 97112592 - Aak1 protein_coding retained_intron MGP_C3HHeJ_T0078674.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97110567 97247554 - MGP_C3HHeJ_P0078674 Aak1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078675.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97145961 97247979 - Aak1 protein_coding retained_intron MGP_C3HHeJ_T0078676.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97161261 97248075 - MGP_C3HHeJ_P0078676 Aak1 protein_coding protein_coding MGP_C3HHeJ_T0078677.1 MGP_C3HHeJ_G0030747.1 mouse_genomes_project 6 97161266 97246422 - Aak1 protein_coding processed_transcript MGP_C3HHeJ_T0080271.1 MGP_C3HHeJ_G0031124.1 mouse_genomes_project 6 138677502 139154506 - MGP_C3HHeJ_P0080271 Grin2b protein_coding protein_coding MGP_C3HHeJ_T0080272.1 MGP_C3HHeJ_G0031124.1 mouse_genomes_project 6 138693856 139155504 - MGP_C3HHeJ_P0080272 Grin2b protein_coding protein_coding MGP_C3HHeJ_T0080273.1 MGP_C3HHeJ_G0031124.1 mouse_genomes_project 6 138837987 139155504 - MGP_C3HHeJ_P0080273 Grin2b protein_coding protein_coding MGP_C3HHeJ_T0080274.1 MGP_C3HHeJ_G0031124.1 mouse_genomes_project 6 139021304 139153269 - MGP_C3HHeJ_P0080274 Grin2b protein_coding protein_coding MGP_C3HHeJ_T0080275.1 MGP_C3HHeJ_G0031124.1 mouse_genomes_project 6 139021307 139155504 - MGP_C3HHeJ_P0080275 Grin2b protein_coding protein_coding MGP_C3HHeJ_T0080276.1 MGP_C3HHeJ_G0031124.1 mouse_genomes_project 6 139021307 139155504 - MGP_C3HHeJ_P0080276 Grin2b protein_coding protein_coding MGP_C3HHeJ_T0008422.1 MGP_C3HHeJ_G0006815.1 mouse_genomes_project 6 7795857 7872068 + Gm44004 lincRNA lincRNA MGP_C3HHeJ_T0078945.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100734220 100750919 + Dguok protein_coding retained_intron MGP_C3HHeJ_T0078946.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100734238 100760890 + MGP_C3HHeJ_P0078946 Dguok protein_coding protein_coding MGP_C3HHeJ_T0078947.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100734284 100760888 + MGP_C3HHeJ_P0078947 Dguok protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078948.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100734306 100760798 + MGP_C3HHeJ_P0078948 Dguok protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078949.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100747449 100760242 + Dguok protein_coding processed_transcript MGP_C3HHeJ_T0078950.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100750706 100753148 + Dguok protein_coding retained_intron MGP_C3HHeJ_T0078951.1 MGP_C3HHeJ_G0030799.1 mouse_genomes_project 6 100754116 100759894 + Dguok protein_coding processed_transcript MGP_C3HHeJ_T0002025.1 MGP_C3HHeJ_G0001946.1 mouse_genomes_project 6 95279193 95282081 - TEC TEC MGP_C3HHeJ_T0015141.1 MGP_C3HHeJ_G0013245.1 mouse_genomes_project 6 43116472 43117175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002150.1 MGP_C3HHeJ_G0002071.1 mouse_genomes_project 6 152279449 152281112 + TEC TEC MGP_C3HHeJ_T0076078.1 MGP_C3HHeJ_G0030173.1 mouse_genomes_project 6 15897541 15903016 + MGP_C3HHeJ_P0076078 Lsm8 protein_coding protein_coding MGP_C3HHeJ_T0076079.1 MGP_C3HHeJ_G0030173.1 mouse_genomes_project 6 15897603 15904714 + Lsm8 protein_coding retained_intron MGP_C3HHeJ_T0076080.1 MGP_C3HHeJ_G0030173.1 mouse_genomes_project 6 15897618 15899370 + Lsm8 protein_coding retained_intron MGP_C3HHeJ_T0076081.1 MGP_C3HHeJ_G0030173.1 mouse_genomes_project 6 15897630 15902710 + MGP_C3HHeJ_P0076081 Lsm8 protein_coding protein_coding MGP_C3HHeJ_T0099542.1 MGP_C3HHeJ_G0037736.1 mouse_genomes_project 6 119294238 119294344 + Gm23543 snRNA snRNA MGP_C3HHeJ_T0008580.1 MGP_C3HHeJ_G0006930.1 mouse_genomes_project 6 92466291 92468281 + 4930471M09Rik lincRNA lincRNA MGP_C3HHeJ_T0008581.1 MGP_C3HHeJ_G0006930.1 mouse_genomes_project 6 92466349 92476596 + 4930471M09Rik lincRNA lincRNA MGP_C3HHeJ_T0077213.1 MGP_C3HHeJ_G0030443.1 mouse_genomes_project 6 50793389 50797098 - MGP_C3HHeJ_P0077213 Hoxa11 protein_coding protein_coding MGP_C3HHeJ_T0077214.1 MGP_C3HHeJ_G0030443.1 mouse_genomes_project 6 50793393 50797083 - Hoxa11 protein_coding processed_transcript MGP_C3HHeJ_T0008582.1 MGP_C3HHeJ_G0006931.1 mouse_genomes_project 6 92795071 92796183 + Gm44278 lincRNA lincRNA MGP_C3HHeJ_T0001953.1 MGP_C3HHeJ_G0001875.1 mouse_genomes_project 6 52265184 52267389 + TEC TEC MGP_C3HHeJ_T0076987.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46813381 46832194 - MGP_C3HHeJ_P0076987 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076988.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46813381 46829719 - MGP_C3HHeJ_P0076988 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076989.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46813381 46832091 - MGP_C3HHeJ_P0076989 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076990.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46819850 46832000 - MGP_C3HHeJ_P0076990 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076991.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46822321 46832452 - MGP_C3HHeJ_P0076991 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076992.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46822321 46831713 - MGP_C3HHeJ_P0076992 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076993.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46822321 46831707 - MGP_C3HHeJ_P0076993 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076994.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46822344 46832069 - MGP_C3HHeJ_P0076994 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076995.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46823340 46832320 - MGP_C3HHeJ_P0076995 Zfp467 protein_coding protein_coding MGP_C3HHeJ_T0076996.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46825098 46831985 - MGP_C3HHeJ_P0076996 Zfp467 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076997.1 MGP_C3HHeJ_G0030387.1 mouse_genomes_project 6 46828445 46832121 - Zfp467 protein_coding retained_intron MGP_C3HHeJ_T0078444.1 MGP_C3HHeJ_G0030701.1 mouse_genomes_project 6 93865860 93866793 - MGP_C3HHeJ_P0078444 Vmn1r50 protein_coding protein_coding MGP_C3HHeJ_T0078445.1 MGP_C3HHeJ_G0030701.1 mouse_genomes_project 6 93865860 93872513 - MGP_C3HHeJ_P0078445 Vmn1r50 protein_coding protein_coding MGP_C3HHeJ_T0018057.1 MGP_C3HHeJ_G0015398.1 mouse_genomes_project 6 74749286 74751751 - Gm17055 processed_transcript retained_intron MGP_C3HHeJ_T0018058.1 MGP_C3HHeJ_G0015398.1 mouse_genomes_project 6 74749406 74751879 - Gm17055 processed_transcript lincRNA MGP_C3HHeJ_T0015476.1 MGP_C3HHeJ_G0013580.1 mouse_genomes_project 6 152355619 152355790 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100762.1 MGP_C3HHeJ_G0038956.1 mouse_genomes_project 6 58620225 58620354 - Gm22622 snoRNA snoRNA MGP_C3HHeJ_T0078079.1 MGP_C3HHeJ_G0030624.1 mouse_genomes_project 6 71730714 72671733 - MGP_C3HHeJ_P0078079 Grm7 protein_coding protein_coding MGP_C3HHeJ_T0078080.1 MGP_C3HHeJ_G0030624.1 mouse_genomes_project 6 71731877 72671734 - MGP_C3HHeJ_P0078080 Grm7 protein_coding protein_coding MGP_C3HHeJ_T0078081.1 MGP_C3HHeJ_G0030624.1 mouse_genomes_project 6 71796266 71803202 - MGP_C3HHeJ_P0078081 Grm7 protein_coding protein_coding MGP_C3HHeJ_T0078082.1 MGP_C3HHeJ_G0030624.1 mouse_genomes_project 6 71798617 71803231 - MGP_C3HHeJ_P0078082 Grm7 protein_coding protein_coding MGP_C3HHeJ_T0078083.1 MGP_C3HHeJ_G0030624.1 mouse_genomes_project 6 71801856 72671734 - MGP_C3HHeJ_P0078083 Grm7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008433.1 MGP_C3HHeJ_G0006823.1 mouse_genomes_project 6 14192635 14201026 + D830026I12Rik lincRNA lincRNA MGP_C3HHeJ_T0008434.1 MGP_C3HHeJ_G0006823.1 mouse_genomes_project 6 14192991 14201932 + D830026I12Rik lincRNA lincRNA MGP_C3HHeJ_T0008435.1 MGP_C3HHeJ_G0006823.1 mouse_genomes_project 6 14193006 14206400 + D830026I12Rik lincRNA lincRNA MGP_C3HHeJ_T0001924.1 MGP_C3HHeJ_G0001846.1 mouse_genomes_project 6 43252145 43255894 + TEC TEC MGP_C3HHeJ_T0080353.1 MGP_C3HHeJ_G0031141.1 mouse_genomes_project 6 140854827 140872097 + MGP_C3HHeJ_P0080353 Strap protein_coding protein_coding MGP_C3HHeJ_T0080354.1 MGP_C3HHeJ_G0031141.1 mouse_genomes_project 6 140864784 140868918 + Strap protein_coding processed_transcript MGP_C3HHeJ_T0080355.1 MGP_C3HHeJ_G0031141.1 mouse_genomes_project 6 140869389 140870841 + Strap protein_coding retained_intron MGP_C3HHeJ_T0099503.1 MGP_C3HHeJ_G0037697.1 mouse_genomes_project 6 16712931 16713038 + Gm22828 snRNA snRNA MGP_C3HHeJ_T0011546.1 MGP_C3HHeJ_G0009679.1 mouse_genomes_project 6 50710733 50710947 + Gm27861 misc_RNA misc_RNA MGP_C3HHeJ_T0008628.1 MGP_C3HHeJ_G0006966.1 mouse_genomes_project 6 113074794 113091203 - lincRNA lincRNA MGP_C3HHeJ_T0010660.1 MGP_C3HHeJ_G0008793.1 mouse_genomes_project 6 15498687 15498757 - Gm26233 miRNA miRNA MGP_C3HHeJ_T0001993.1 MGP_C3HHeJ_G0001914.1 mouse_genomes_project 6 82437998 82440858 - TEC TEC MGP_C3HHeJ_T0008691.1 MGP_C3HHeJ_G0007013.1 mouse_genomes_project 6 149136609 149144276 - Gm15704 lincRNA lincRNA MGP_C3HHeJ_T0102071.1 MGP_C3HHeJ_G0040036.1 mouse_genomes_project 6 36391494 36396220 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001998.1 MGP_C3HHeJ_G0001919.1 mouse_genomes_project 6 83361570 83364090 + TEC TEC MGP_C3HHeJ_T0015434.1 MGP_C3HHeJ_G0013538.1 mouse_genomes_project 6 133984493 133986351 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010733.1 MGP_C3HHeJ_G0008866.1 mouse_genomes_project 6 141050906 141051020 - Gm24308 miRNA miRNA MGP_C3HHeJ_T0000145.1 MGP_C3HHeJ_G0000112.1 mouse_genomes_project 6 114697932 114698657 + MGP_C3HHeJ_P0000145 Igkv1-35 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000146.1 MGP_C3HHeJ_G0000112.1 mouse_genomes_project 6 114697932 114698657 + MGP_C3HHeJ_P0000146 Igkv1-35 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015336.1 MGP_C3HHeJ_G0013440.1 mouse_genomes_project 6 116731258 116732461 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010667.1 MGP_C3HHeJ_G0008800.1 mouse_genomes_project 6 27708159 27708234 - Mir182 miRNA miRNA MGP_C3HHeJ_T0078929.1 MGP_C3HHeJ_G0030795.1 mouse_genomes_project 6 100563255 100569898 + MGP_C3HHeJ_P0078929 Cd207 protein_coding protein_coding MGP_C3HHeJ_T0002023.1 MGP_C3HHeJ_G0001944.1 mouse_genomes_project 6 95213998 95217761 - TEC TEC MGP_C3HHeJ_T0078078.1 MGP_C3HHeJ_G0030623.1 mouse_genomes_project 6 70945552 71002738 - MGP_C3HHeJ_P0078078 Lmcd1 protein_coding protein_coding MGP_C3HHeJ_T0078407.1 MGP_C3HHeJ_G0030688.1 mouse_genomes_project 6 93290462 93332162 - MGP_C3HHeJ_P0078407 Slc41a3 protein_coding protein_coding MGP_C3HHeJ_T0078408.1 MGP_C3HHeJ_G0030688.1 mouse_genomes_project 6 93290462 93317757 - MGP_C3HHeJ_P0078408 Slc41a3 protein_coding protein_coding MGP_C3HHeJ_T0077110.1 MGP_C3HHeJ_G0030417.1 mouse_genomes_project 6 47761464 47784002 + MGP_C3HHeJ_P0077110 Ccdc126 protein_coding protein_coding MGP_C3HHeJ_T0077111.1 MGP_C3HHeJ_G0030417.1 mouse_genomes_project 6 47761497 47783998 + MGP_C3HHeJ_P0077111 Ccdc126 protein_coding protein_coding MGP_C3HHeJ_T0101445.1 MGP_C3HHeJ_G0039460.1 mouse_genomes_project 6 122170865 122174073 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101446.1 MGP_C3HHeJ_G0039460.1 mouse_genomes_project 6 122172312 122173723 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0099525.1 MGP_C3HHeJ_G0037719.1 mouse_genomes_project 6 70662483 70662590 + Gm23002 snRNA snRNA MGP_C3HHeJ_T0002671.1 MGP_C3HHeJ_G0002553.1 mouse_genomes_project 6 39165016 39165310 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0079602.1 MGP_C3HHeJ_G0030945.1 mouse_genomes_project 6 125217389 125247820 - MGP_C3HHeJ_P0079602 protein_coding protein_coding MGP_C3HHeJ_T0015293.1 MGP_C3HHeJ_G0013397.1 mouse_genomes_project 6 99404994 99406002 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010681.1 MGP_C3HHeJ_G0008814.1 mouse_genomes_project 6 49778477 49778576 - Mir148a miRNA miRNA MGP_C3HHeJ_T0015444.1 MGP_C3HHeJ_G0013548.1 mouse_genomes_project 6 135757313 135757739 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079183.1 MGP_C3HHeJ_G0030851.1 mouse_genomes_project 6 111842780 111853536 + MGP_C3HHeJ_P0079183 Elmod3 protein_coding protein_coding MGP_C3HHeJ_T0079184.1 MGP_C3HHeJ_G0030851.1 mouse_genomes_project 6 111842798 111873629 + MGP_C3HHeJ_P0079184 Elmod3 protein_coding protein_coding MGP_C3HHeJ_T0079185.1 MGP_C3HHeJ_G0030851.1 mouse_genomes_project 6 111842832 111871843 + MGP_C3HHeJ_P0079185 Elmod3 protein_coding protein_coding MGP_C3HHeJ_T0079186.1 MGP_C3HHeJ_G0030851.1 mouse_genomes_project 6 111842850 111875203 + MGP_C3HHeJ_P0079186 Elmod3 protein_coding protein_coding MGP_C3HHeJ_T0079187.1 MGP_C3HHeJ_G0030851.1 mouse_genomes_project 6 111842851 111875215 + MGP_C3HHeJ_P0079187 Elmod3 protein_coding protein_coding MGP_C3HHeJ_T0079188.1 MGP_C3HHeJ_G0030851.1 mouse_genomes_project 6 111846156 111856732 + Elmod3 protein_coding processed_transcript MGP_C3HHeJ_T0080495.1 MGP_C3HHeJ_G0031168.1 mouse_genomes_project 6 145669415 145674543 + MGP_C3HHeJ_P0080495 Spx protein_coding unknown_likely_coding MGP_C3HHeJ_T0080496.1 MGP_C3HHeJ_G0031168.1 mouse_genomes_project 6 145669415 145674543 + MGP_C3HHeJ_P0080496 Spx protein_coding protein_coding MGP_C3HHeJ_T0080497.1 MGP_C3HHeJ_G0031168.1 mouse_genomes_project 6 145669986 145675702 + Spx protein_coding retained_intron MGP_C3HHeJ_T0080498.1 MGP_C3HHeJ_G0031168.1 mouse_genomes_project 6 145670495 145675702 + Spx protein_coding retained_intron MGP_C3HHeJ_T0010718.1 MGP_C3HHeJ_G0008851.1 mouse_genomes_project 6 115204482 115204541 - miRNA miRNA MGP_C3HHeJ_T0077117.1 MGP_C3HHeJ_G0030419.1 mouse_genomes_project 6 47843915 47926887 + MGP_C3HHeJ_P0077117 Stk31 protein_coding protein_coding MGP_C3HHeJ_T0077118.1 MGP_C3HHeJ_G0030419.1 mouse_genomes_project 6 47843946 47926738 + MGP_C3HHeJ_P0077118 Stk31 protein_coding protein_coding MGP_C3HHeJ_T0077119.1 MGP_C3HHeJ_G0030419.1 mouse_genomes_project 6 47843946 47926738 + MGP_C3HHeJ_P0077119 Stk31 protein_coding protein_coding MGP_C3HHeJ_T0077120.1 MGP_C3HHeJ_G0030419.1 mouse_genomes_project 6 47850206 47926738 + MGP_C3HHeJ_P0077120 Stk31 protein_coding unknown_likely_coding MGP_C3HHeJ_T0077121.1 MGP_C3HHeJ_G0030419.1 mouse_genomes_project 6 47891614 47926886 + MGP_C3HHeJ_P0077121 Stk31 protein_coding protein_coding MGP_C3HHeJ_T0010704.1 MGP_C3HHeJ_G0008837.1 mouse_genomes_project 6 93251027 93251154 + Gm24816 miRNA miRNA MGP_C3HHeJ_T0078708.1 MGP_C3HHeJ_G0030755.1 mouse_genomes_project 6 97673189 97692103 - MGP_C3HHeJ_P0078708 Gm44790 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001928.1 MGP_C3HHeJ_G0001850.1 mouse_genomes_project 6 43420622 43423420 + TEC TEC MGP_C3HHeJ_T0079453.1 MGP_C3HHeJ_G0030909.1 mouse_genomes_project 6 122287031 122311773 - MGP_C3HHeJ_P0079453 Bid protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079454.1 MGP_C3HHeJ_G0030909.1 mouse_genomes_project 6 122287955 122311790 - MGP_C3HHeJ_P0079454 Bid protein_coding protein_coding MGP_C3HHeJ_T0079455.1 MGP_C3HHeJ_G0030909.1 mouse_genomes_project 6 122290717 122292668 - Bid protein_coding retained_intron MGP_C3HHeJ_T0079456.1 MGP_C3HHeJ_G0030909.1 mouse_genomes_project 6 122295322 122311735 - MGP_C3HHeJ_P0079456 Bid protein_coding protein_coding MGP_C3HHeJ_T0079457.1 MGP_C3HHeJ_G0030909.1 mouse_genomes_project 6 122302108 122311740 - Bid protein_coding processed_transcript MGP_C3HHeJ_T0100757.1 MGP_C3HHeJ_G0038951.1 mouse_genomes_project 6 53625988 53626117 + Gm24230 snoRNA snoRNA MGP_C3HHeJ_T0079421.1 MGP_C3HHeJ_G0030903.1 mouse_genomes_project 6 119706979 119783356 - MGP_C3HHeJ_P0079421 C130060K24Rik protein_coding protein_coding MGP_C3HHeJ_T0079422.1 MGP_C3HHeJ_G0030903.1 mouse_genomes_project 6 119712136 119727473 - MGP_C3HHeJ_P0079422 C130060K24Rik protein_coding protein_coding MGP_C3HHeJ_T0079423.1 MGP_C3HHeJ_G0030903.1 mouse_genomes_project 6 119712164 119783545 - MGP_C3HHeJ_P0079423 C130060K24Rik protein_coding protein_coding MGP_C3HHeJ_T0002141.1 MGP_C3HHeJ_G0002062.1 mouse_genomes_project 6 149274501 149276387 + TEC TEC MGP_C3HHeJ_T0011566.1 MGP_C3HHeJ_G0009699.1 mouse_genomes_project 6 84068405 84068652 - Gm24936 misc_RNA misc_RNA MGP_C3HHeJ_T0075771.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 217875 321110 + MGP_C3HHeJ_P0075771 Vps50 protein_coding protein_coding MGP_C3HHeJ_T0075772.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 217897 318689 + MGP_C3HHeJ_P0075772 Vps50 protein_coding protein_coding MGP_C3HHeJ_T0075773.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 217915 320894 + MGP_C3HHeJ_P0075773 Vps50 protein_coding protein_coding MGP_C3HHeJ_T0075774.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 217919 241258 + Vps50 protein_coding retained_intron MGP_C3HHeJ_T0075775.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 237429 253002 + Vps50 protein_coding processed_transcript MGP_C3HHeJ_T0075776.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 281664 320894 + Vps50 protein_coding retained_intron MGP_C3HHeJ_T0075777.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 293380 320894 + Vps50 protein_coding processed_transcript MGP_C3HHeJ_T0075778.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 305727 310734 + Vps50 protein_coding retained_intron MGP_C3HHeJ_T0075779.1 MGP_C3HHeJ_G0030117.1 mouse_genomes_project 6 311694 317841 + Vps50 protein_coding processed_transcript MGP_C3HHeJ_T0000260.1 MGP_C3HHeJ_G0000210.1 mouse_genomes_project 6 114134829 114135129 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0078210.1 MGP_C3HHeJ_G0030649.1 mouse_genomes_project 6 85350333 85465768 + MGP_C3HHeJ_P0078210 Gm765 protein_coding protein_coding MGP_C3HHeJ_T0078211.1 MGP_C3HHeJ_G0030649.1 mouse_genomes_project 6 85350428 85351626 + Gm765 protein_coding retained_intron MGP_C3HHeJ_T0004899.1 MGP_C3HHeJ_G0004196.1 mouse_genomes_project 6 67013776 67036292 - Gm20404 antisense antisense MGP_C3HHeJ_T0004995.1 MGP_C3HHeJ_G0004254.1 mouse_genomes_project 6 112549218 112551860 + Gm26628 antisense antisense MGP_C3HHeJ_T0100752.1 MGP_C3HHeJ_G0038946.1 mouse_genomes_project 6 44732743 44732875 - Gm25161 snoRNA snoRNA MGP_C3HHeJ_T0078456.1 MGP_C3HHeJ_G0030709.1 mouse_genomes_project 6 94288445 94289378 - MGP_C3HHeJ_P0078456 Vmn1r40 protein_coding protein_coding MGP_C3HHeJ_T0078409.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93336683 93387239 - MGP_C3HHeJ_P0078409 Aldh1l1 protein_coding protein_coding MGP_C3HHeJ_T0078410.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93337717 93387223 - MGP_C3HHeJ_P0078410 Aldh1l1 protein_coding protein_coding MGP_C3HHeJ_T0078411.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93337726 93387180 - MGP_C3HHeJ_P0078411 Aldh1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078412.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93339807 93347532 - Aldh1l1 protein_coding retained_intron MGP_C3HHeJ_T0078413.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93367155 93370334 - Aldh1l1 protein_coding processed_transcript MGP_C3HHeJ_T0078414.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93378074 93387185 - MGP_C3HHeJ_P0078414 Aldh1l1 protein_coding protein_coding MGP_C3HHeJ_T0078415.1 MGP_C3HHeJ_G0030689.1 mouse_genomes_project 6 93378649 93452357 - Aldh1l1 protein_coding processed_transcript MGP_C3HHeJ_T0100771.1 MGP_C3HHeJ_G0038965.1 mouse_genomes_project 6 85916994 85917137 - Gm23703 snoRNA snoRNA MGP_C3HHeJ_T0098157.1 MGP_C3HHeJ_G0036369.1 mouse_genomes_project 6 9659946 9660066 + n-R5s160 rRNA rRNA MGP_C3HHeJ_T0077423.1 MGP_C3HHeJ_G0030505.1 mouse_genomes_project 6 56804674 56805727 - MGP_C3HHeJ_P0077423 Vmn1r25 protein_coding protein_coding MGP_C3HHeJ_T0076543.1 MGP_C3HHeJ_G0030260.1 mouse_genomes_project 6 32585656 32591902 - MGP_C3HHeJ_P0076543 3110062M04Rik protein_coding protein_coding MGP_C3HHeJ_T0076544.1 MGP_C3HHeJ_G0030260.1 mouse_genomes_project 6 32585725 32591941 - MGP_C3HHeJ_P0076544 3110062M04Rik protein_coding protein_coding MGP_C3HHeJ_T0076546.1 MGP_C3HHeJ_G0030260.1 mouse_genomes_project 6 32587580 32591890 - MGP_C3HHeJ_P0076546 3110062M04Rik protein_coding protein_coding MGP_C3HHeJ_T0076547.1 MGP_C3HHeJ_G0030260.1 mouse_genomes_project 6 32588528 32591010 - MGP_C3HHeJ_P0076547 3110062M04Rik protein_coding protein_coding MGP_C3HHeJ_T0076548.1 MGP_C3HHeJ_G0030260.1 mouse_genomes_project 6 32589228 32590861 - 3110062M04Rik protein_coding retained_intron MGP_C3HHeJ_T0077340.1 MGP_C3HHeJ_G0030470.1 mouse_genomes_project 6 54511673 54649770 + MGP_C3HHeJ_P0077340 Ccdc129 protein_coding protein_coding MGP_C3HHeJ_T0077341.1 MGP_C3HHeJ_G0030470.1 mouse_genomes_project 6 54560954 54649883 + Ccdc129 protein_coding processed_transcript MGP_C3HHeJ_T0008451.1 MGP_C3HHeJ_G0006835.1 mouse_genomes_project 6 28708236 28708540 - Gm13834 lincRNA lincRNA MGP_C3HHeJ_T0078550.1 MGP_C3HHeJ_G0030721.1 mouse_genomes_project 6 95526840 95559599 - MGP_C3HHeJ_P0078550 Ruvbl1 protein_coding protein_coding MGP_C3HHeJ_T0078551.1 MGP_C3HHeJ_G0030721.1 mouse_genomes_project 6 95541217 95559281 - MGP_C3HHeJ_P0078551 Ruvbl1 protein_coding protein_coding MGP_C3HHeJ_T0077420.1 MGP_C3HHeJ_G0030502.1 mouse_genomes_project 6 56727907 56729003 - MGP_C3HHeJ_P0077420 Vmn1r22 protein_coding protein_coding MGP_C3HHeJ_T0000166.1 MGP_C3HHeJ_G0000127.1 mouse_genomes_project 6 116036807 116037269 + MGP_C3HHeJ_P0000166 Igkv12-89 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000167.1 MGP_C3HHeJ_G0000127.1 mouse_genomes_project 6 116036807 116037269 + MGP_C3HHeJ_P0000167 Igkv12-89 IG_V_gene IG_V_gene MGP_C3HHeJ_T0010707.1 MGP_C3HHeJ_G0008840.1 mouse_genomes_project 6 97543306 97543368 + Gm22184 miRNA miRNA MGP_C3HHeJ_T0076846.1 MGP_C3HHeJ_G0030343.1 mouse_genomes_project 6 40342033 40351362 - MGP_C3HHeJ_P0076846 Fam131b protein_coding protein_coding MGP_C3HHeJ_T0076847.1 MGP_C3HHeJ_G0030343.1 mouse_genomes_project 6 40344880 40351191 - MGP_C3HHeJ_P0076847 Fam131b protein_coding protein_coding MGP_C3HHeJ_T0076869.1 MGP_C3HHeJ_G0030351.1 mouse_genomes_project 6 40511934 40512986 - MGP_C3HHeJ_P0076869 Olfr456 protein_coding protein_coding MGP_C3HHeJ_T0078738.1 MGP_C3HHeJ_G0030757.1 mouse_genomes_project 6 97721385 97732467 + MGP_C3HHeJ_P0078738 Pcyox1 protein_coding protein_coding MGP_C3HHeJ_T0078739.1 MGP_C3HHeJ_G0030757.1 mouse_genomes_project 6 97721396 97726805 + MGP_C3HHeJ_P0078739 Pcyox1 protein_coding protein_coding MGP_C3HHeJ_T0078740.1 MGP_C3HHeJ_G0030757.1 mouse_genomes_project 6 97721398 97729816 + MGP_C3HHeJ_P0078740 Pcyox1 protein_coding protein_coding MGP_C3HHeJ_T0078741.1 MGP_C3HHeJ_G0030757.1 mouse_genomes_project 6 97721420 97722757 + Pcyox1 protein_coding retained_intron MGP_C3HHeJ_T0078742.1 MGP_C3HHeJ_G0030757.1 mouse_genomes_project 6 97721913 97724057 + Pcyox1 protein_coding retained_intron MGP_C3HHeJ_T0078743.1 MGP_C3HHeJ_G0030757.1 mouse_genomes_project 6 97726145 97729498 + MGP_C3HHeJ_P0078743 Pcyox1 protein_coding protein_coding MGP_C3HHeJ_T0076726.1 MGP_C3HHeJ_G0030298.1 mouse_genomes_project 6 37524051 37647414 - MGP_C3HHeJ_P0076726 Braf protein_coding protein_coding MGP_C3HHeJ_T0076727.1 MGP_C3HHeJ_G0030298.1 mouse_genomes_project 6 37534913 37647144 - MGP_C3HHeJ_P0076727 Braf protein_coding protein_coding MGP_C3HHeJ_T0076728.1 MGP_C3HHeJ_G0030298.1 mouse_genomes_project 6 37560086 37565581 - Braf protein_coding retained_intron MGP_C3HHeJ_T0076729.1 MGP_C3HHeJ_G0030298.1 mouse_genomes_project 6 37561101 37564049 - Braf protein_coding retained_intron MGP_C3HHeJ_T0076730.1 MGP_C3HHeJ_G0030298.1 mouse_genomes_project 6 37572373 37585635 - Braf protein_coding retained_intron MGP_C3HHeJ_T0011742.1 MGP_C3HHeJ_G0009849.1 mouse_genomes_project 6 131726563 131738423 - MGP_C3HHeJ_P0011742 Clec7a polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011743.1 MGP_C3HHeJ_G0009849.1 mouse_genomes_project 6 131726563 131738428 - MGP_C3HHeJ_P0011743 Clec7a polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011744.1 MGP_C3HHeJ_G0009849.1 mouse_genomes_project 6 131728006 131738428 - MGP_C3HHeJ_P0011744 Clec7a polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011745.1 MGP_C3HHeJ_G0009849.1 mouse_genomes_project 6 131736185 131738430 - Clec7a polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0078161.1 MGP_C3HHeJ_G0030641.1 mouse_genomes_project 6 82788452 82896188 - MGP_C3HHeJ_P0078161 Gxylt2 protein_coding protein_coding MGP_C3HHeJ_T0078162.1 MGP_C3HHeJ_G0030641.1 mouse_genomes_project 6 82893247 82896167 - Gxylt2 protein_coding processed_transcript MGP_C3HHeJ_T0099538.1 MGP_C3HHeJ_G0037732.1 mouse_genomes_project 6 108155661 108155822 + Gm22283 snRNA snRNA MGP_C3HHeJ_T0005551.1 MGP_C3HHeJ_G0004668.1 mouse_genomes_project 6 60221914 60224147 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0005552.1 MGP_C3HHeJ_G0004668.1 mouse_genomes_project 6 60223604 60229879 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0005553.1 MGP_C3HHeJ_G0004668.1 mouse_genomes_project 6 60225629 60230419 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0079512.1 MGP_C3HHeJ_G0030920.1 mouse_genomes_project 6 123887826 123900671 - MGP_C3HHeJ_P0079512 Klrg1 protein_coding protein_coding MGP_C3HHeJ_T0002078.1 MGP_C3HHeJ_G0001999.1 mouse_genomes_project 6 111201100 111203017 - TEC TEC MGP_C3HHeJ_T0076669.1 MGP_C3HHeJ_G0030287.1 mouse_genomes_project 6 36560687 36741340 - MGP_C3HHeJ_P0076669 Hipk2 protein_coding protein_coding MGP_C3HHeJ_T0076670.1 MGP_C3HHeJ_G0030287.1 mouse_genomes_project 6 36560692 36741388 - MGP_C3HHeJ_P0076670 Hipk2 protein_coding protein_coding MGP_C3HHeJ_T0076671.1 MGP_C3HHeJ_G0030287.1 mouse_genomes_project 6 36561178 36741234 - MGP_C3HHeJ_P0076671 Hipk2 protein_coding protein_coding MGP_C3HHeJ_T0076672.1 MGP_C3HHeJ_G0030287.1 mouse_genomes_project 6 36601458 36608020 - Hipk2 protein_coding processed_transcript MGP_C3HHeJ_T0076673.1 MGP_C3HHeJ_G0030287.1 mouse_genomes_project 6 36610219 36683909 - Hipk2 protein_coding retained_intron MGP_C3HHeJ_T0076674.1 MGP_C3HHeJ_G0030287.1 mouse_genomes_project 6 36683469 36702838 - Hipk2 protein_coding retained_intron MGP_C3HHeJ_T0005554.1 MGP_C3HHeJ_G0004669.1 mouse_genomes_project 6 66928221 66936887 + 9530062K07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0015335.1 MGP_C3HHeJ_G0013439.1 mouse_genomes_project 6 116637758 116638049 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008491.1 MGP_C3HHeJ_G0006858.1 mouse_genomes_project 6 37118021 37120449 + Gm43479 lincRNA lincRNA MGP_C3HHeJ_T0001896.1 MGP_C3HHeJ_G0001818.1 mouse_genomes_project 6 20534955 20537156 + TEC TEC MGP_C3HHeJ_T0015243.1 MGP_C3HHeJ_G0013347.1 mouse_genomes_project 6 80228984 80229421 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076009.1 MGP_C3HHeJ_G0030164.1 mouse_genomes_project 6 14282943 14290873 + MGP_C3HHeJ_P0076009 Cav2 protein_coding protein_coding MGP_C3HHeJ_T0076010.1 MGP_C3HHeJ_G0030164.1 mouse_genomes_project 6 14283085 14284443 + MGP_C3HHeJ_P0076010 Cav2 protein_coding protein_coding MGP_C3HHeJ_T0076011.1 MGP_C3HHeJ_G0030164.1 mouse_genomes_project 6 14283117 14289197 + MGP_C3HHeJ_P0076011 Cav2 protein_coding protein_coding MGP_C3HHeJ_T0080036.1 MGP_C3HHeJ_G0031037.1 mouse_genomes_project 6 131028320 131046147 - MGP_C3HHeJ_P0080036 protein_coding protein_coding MGP_C3HHeJ_T0080037.1 MGP_C3HHeJ_G0031037.1 mouse_genomes_project 6 131028989 131046129 - MGP_C3HHeJ_P0080037 protein_coding protein_coding MGP_C3HHeJ_T0080038.1 MGP_C3HHeJ_G0031037.1 mouse_genomes_project 6 131029508 131046106 - MGP_C3HHeJ_P0080038 protein_coding protein_coding MGP_C3HHeJ_T0080039.1 MGP_C3HHeJ_G0031037.1 mouse_genomes_project 6 131035681 131046121 - MGP_C3HHeJ_P0080039 protein_coding protein_coding MGP_C3HHeJ_T0015103.1 MGP_C3HHeJ_G0013207.1 mouse_genomes_project 6 23349338 23349673 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011529.1 MGP_C3HHeJ_G0009662.1 mouse_genomes_project 6 14710855 14710964 + Gm27762 misc_RNA misc_RNA MGP_C3HHeJ_T0004969.1 MGP_C3HHeJ_G0004241.1 mouse_genomes_project 6 100479879 100480989 + 1700124L16Rik antisense antisense MGP_C3HHeJ_T0004970.1 MGP_C3HHeJ_G0004241.1 mouse_genomes_project 6 100479902 100480989 + 1700124L16Rik antisense antisense MGP_C3HHeJ_T0004971.1 MGP_C3HHeJ_G0004241.1 mouse_genomes_project 6 100480236 100480989 + 1700124L16Rik antisense antisense MGP_C3HHeJ_T0076198.1 MGP_C3HHeJ_G0030204.1 mouse_genomes_project 6 25858190 25861140 + MGP_C3HHeJ_P0076198 Arf5 protein_coding protein_coding MGP_C3HHeJ_T0076199.1 MGP_C3HHeJ_G0030204.1 mouse_genomes_project 6 25858214 25860870 + MGP_C3HHeJ_P0076199 Arf5 protein_coding protein_coding MGP_C3HHeJ_T0076200.1 MGP_C3HHeJ_G0030204.1 mouse_genomes_project 6 25858333 25859250 + Arf5 protein_coding retained_intron MGP_C3HHeJ_T0102108.1 MGP_C3HHeJ_G0040073.1 mouse_genomes_project 6 97986890 97987933 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078073.1 MGP_C3HHeJ_G0030621.1 mouse_genomes_project 6 70799600 70812964 - MGP_C3HHeJ_P0078073 Cav3 protein_coding protein_coding MGP_C3HHeJ_T0077327.1 MGP_C3HHeJ_G0030466.1 mouse_genomes_project 6 53996807 54008929 + MGP_C3HHeJ_P0077327 Aqp1 protein_coding protein_coding MGP_C3HHeJ_T0001905.1 MGP_C3HHeJ_G0001827.1 mouse_genomes_project 6 27051797 27053330 - TEC TEC MGP_C3HHeJ_T0102114.1 MGP_C3HHeJ_G0040079.1 mouse_genomes_project 6 125909118 125910022 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010689.1 MGP_C3HHeJ_G0008822.1 mouse_genomes_project 6 64969666 64969738 - Mir7044 miRNA miRNA MGP_C3HHeJ_T0101447.1 MGP_C3HHeJ_G0039461.1 mouse_genomes_project 6 123201130 123471966 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101449.1 MGP_C3HHeJ_G0039461.1 mouse_genomes_project 6 123368578 123472416 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0078970.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100926140 100940516 + MGP_C3HHeJ_P0078970 Mthfd2 protein_coding protein_coding MGP_C3HHeJ_T0078971.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100934780 100947512 + MGP_C3HHeJ_P0078971 Mthfd2 protein_coding protein_coding MGP_C3HHeJ_T0078972.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100934833 100946801 + MGP_C3HHeJ_P0078972 Mthfd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078973.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100939981 100941042 + Mthfd2 protein_coding retained_intron MGP_C3HHeJ_T0078974.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100940793 100942835 + Mthfd2 protein_coding retained_intron MGP_C3HHeJ_T0078975.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100941838 100943053 + Mthfd2 protein_coding retained_intron MGP_C3HHeJ_T0078976.1 MGP_C3HHeJ_G0030803.1 mouse_genomes_project 6 100943079 100946645 + Mthfd2 protein_coding retained_intron MGP_C3HHeJ_T0101251.1 MGP_C3HHeJ_G0039371.1 mouse_genomes_project 6 118855369 118868910 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101252.1 MGP_C3HHeJ_G0039371.1 mouse_genomes_project 6 118855975 118856708 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101253.1 MGP_C3HHeJ_G0039371.1 mouse_genomes_project 6 118856475 118877245 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0008604.1 MGP_C3HHeJ_G0006948.1 mouse_genomes_project 6 97630281 97635334 + 2310040G24Rik lincRNA lincRNA MGP_C3HHeJ_T0008605.1 MGP_C3HHeJ_G0006948.1 mouse_genomes_project 6 97630304 97635334 + 2310040G24Rik lincRNA lincRNA MGP_C3HHeJ_T0079675.1 MGP_C3HHeJ_G0030966.1 mouse_genomes_project 6 126643169 126656963 - MGP_C3HHeJ_P0079675 protein_coding protein_coding MGP_C3HHeJ_T0079676.1 MGP_C3HHeJ_G0030966.1 mouse_genomes_project 6 126645797 126646251 - protein_coding processed_transcript MGP_C3HHeJ_T0079677.1 MGP_C3HHeJ_G0030966.1 mouse_genomes_project 6 126648344 126656680 - MGP_C3HHeJ_P0079677 protein_coding protein_coding MGP_C3HHeJ_T0011552.1 MGP_C3HHeJ_G0009685.1 mouse_genomes_project 6 50798709 50798942 + Gm27817 misc_RNA misc_RNA MGP_C3HHeJ_T0002673.1 MGP_C3HHeJ_G0002555.1 mouse_genomes_project 6 39206129 39206596 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0079746.1 MGP_C3HHeJ_G0030978.1 mouse_genomes_project 6 126817036 126821305 - MGP_C3HHeJ_P0079746 Ptms protein_coding protein_coding MGP_C3HHeJ_T0079747.1 MGP_C3HHeJ_G0030978.1 mouse_genomes_project 6 126817043 126818033 - Ptms protein_coding processed_transcript MGP_C3HHeJ_T0079748.1 MGP_C3HHeJ_G0030978.1 mouse_genomes_project 6 126817119 126823816 - Ptms protein_coding processed_transcript MGP_C3HHeJ_T0079749.1 MGP_C3HHeJ_G0030978.1 mouse_genomes_project 6 126817404 126818583 - Ptms protein_coding retained_intron MGP_C3HHeJ_T0079750.1 MGP_C3HHeJ_G0030978.1 mouse_genomes_project 6 126817999 126818888 - Ptms protein_coding processed_transcript MGP_C3HHeJ_T0001985.1 MGP_C3HHeJ_G0001906.1 mouse_genomes_project 6 79925011 79927482 - TEC TEC MGP_C3HHeJ_T0099521.1 MGP_C3HHeJ_G0037715.1 mouse_genomes_project 6 62842809 62842916 + Gm25327 snRNA snRNA MGP_C3HHeJ_T0002034.1 MGP_C3HHeJ_G0001955.1 mouse_genomes_project 6 96262394 96263259 + TEC TEC MGP_C3HHeJ_T0002031.1 MGP_C3HHeJ_G0001952.1 mouse_genomes_project 6 96065319 96068858 - TEC TEC MGP_C3HHeJ_T0010688.1 MGP_C3HHeJ_G0008821.1 mouse_genomes_project 6 64622238 64622321 - Gm25953 miRNA miRNA MGP_C3HHeJ_T0080264.1 MGP_C3HHeJ_G0031122.1 mouse_genomes_project 6 138256338 138257617 - MGP_C3HHeJ_P0080264 Pbp2 protein_coding protein_coding MGP_C3HHeJ_T0077791.1 MGP_C3HHeJ_G0030573.1 mouse_genomes_project 6 67333666 67336809 + MGP_C3HHeJ_P0077791 Rpl32 protein_coding protein_coding MGP_C3HHeJ_T0077792.1 MGP_C3HHeJ_G0030573.1 mouse_genomes_project 6 67334065 67336802 + MGP_C3HHeJ_P0077792 Rpl32 protein_coding protein_coding MGP_C3HHeJ_T0076233.1 MGP_C3HHeJ_G0030211.1 mouse_genomes_project 6 26654388 26664711 - MGP_C3HHeJ_P0076233 Prrt4 protein_coding protein_coding MGP_C3HHeJ_T0010694.1 MGP_C3HHeJ_G0008827.1 mouse_genomes_project 6 69695482 69695607 + Gm23365 miRNA miRNA MGP_C3HHeJ_T0000144.1 MGP_C3HHeJ_G0000111.1 mouse_genomes_project 6 114668651 114669218 + MGP_C3HHeJ_P0000144 Igkv8-34 IG_V_gene IG_V_gene MGP_C3HHeJ_T0077291.1 MGP_C3HHeJ_G0030457.1 mouse_genomes_project 6 53226463 53273736 + MGP_C3HHeJ_P0077291 Plekha8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0077292.1 MGP_C3HHeJ_G0030457.1 mouse_genomes_project 6 53234177 53272871 + MGP_C3HHeJ_P0077292 Plekha8 protein_coding protein_coding MGP_C3HHeJ_T0077729.1 MGP_C3HHeJ_G0030563.1 mouse_genomes_project 6 66802109 66864390 - MGP_C3HHeJ_P0077729 Zfand4 protein_coding protein_coding MGP_C3HHeJ_T0000268.1 MGP_C3HHeJ_G0000218.1 mouse_genomes_project 6 114873873 114874323 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0099556.1 MGP_C3HHeJ_G0037750.1 mouse_genomes_project 6 152524782 152524889 - Gm22578 snRNA snRNA MGP_C3HHeJ_T0015431.1 MGP_C3HHeJ_G0013535.1 mouse_genomes_project 6 132972692 132972813 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077590.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63679641 63801100 - MGP_C3HHeJ_P0077590 Cacna2d4 protein_coding protein_coding MGP_C3HHeJ_T0077591.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63681590 63801031 - MGP_C3HHeJ_P0077591 Cacna2d4 protein_coding protein_coding MGP_C3HHeJ_T0077592.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63683115 63701945 - MGP_C3HHeJ_P0077592 Cacna2d4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0077593.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63684740 63700223 - Cacna2d4 protein_coding processed_transcript MGP_C3HHeJ_T0077594.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63687936 63702002 - Cacna2d4 protein_coding processed_transcript MGP_C3HHeJ_T0077595.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63694650 63701969 - Cacna2d4 protein_coding retained_intron MGP_C3HHeJ_T0077600.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63731357 63787121 - Cacna2d4 protein_coding processed_transcript MGP_C3HHeJ_T0077601.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63757105 63801099 - Cacna2d4 protein_coding retained_intron MGP_C3HHeJ_T0077602.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63762189 63784773 - Cacna2d4 protein_coding processed_transcript MGP_C3HHeJ_T0077603.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63762848 63767278 - Cacna2d4 protein_coding retained_intron MGP_C3HHeJ_T0077604.1 MGP_C3HHeJ_G0030537.1 mouse_genomes_project 6 63762891 63767479 - Cacna2d4 protein_coding processed_transcript MGP_C3HHeJ_T0077426.1 MGP_C3HHeJ_G0030508.1 mouse_genomes_project 6 57293681 57294734 - MGP_C3HHeJ_P0077426 Vmn1r30 protein_coding protein_coding MGP_C3HHeJ_T0076623.1 MGP_C3HHeJ_G0030277.1 mouse_genomes_project 6 35928361 35934835 + MGP_C3HHeJ_P0076623 Tmem213 protein_coding protein_coding MGP_C3HHeJ_T0076801.1 MGP_C3HHeJ_G0030330.1 mouse_genomes_project 6 39724021 39742450 - MGP_C3HHeJ_P0076801 Kel protein_coding protein_coding MGP_C3HHeJ_T0076802.1 MGP_C3HHeJ_G0030330.1 mouse_genomes_project 6 39724026 39725710 - MGP_C3HHeJ_P0076802 Kel protein_coding protein_coding MGP_C3HHeJ_T0076803.1 MGP_C3HHeJ_G0030330.1 mouse_genomes_project 6 39724045 39725569 - Kel protein_coding processed_transcript MGP_C3HHeJ_T0076804.1 MGP_C3HHeJ_G0030330.1 mouse_genomes_project 6 39725736 39737279 - MGP_C3HHeJ_P0076804 Kel protein_coding protein_coding MGP_C3HHeJ_T0076805.1 MGP_C3HHeJ_G0030330.1 mouse_genomes_project 6 39726151 39726677 - Kel protein_coding retained_intron MGP_C3HHeJ_T0015357.1 MGP_C3HHeJ_G0013461.1 mouse_genomes_project 6 118558064 118558824 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008664.1 MGP_C3HHeJ_G0006996.1 mouse_genomes_project 6 137868097 137869222 - Gm44238 lincRNA lincRNA MGP_C3HHeJ_T0077882.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69157300 69363902 + Atp2b2 protein_coding processed_transcript MGP_C3HHeJ_T0077883.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69157731 69463367 + MGP_C3HHeJ_P0077883 Atp2b2 protein_coding protein_coding MGP_C3HHeJ_T0077884.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69267723 69458909 + MGP_C3HHeJ_P0077884 Atp2b2 protein_coding protein_coding MGP_C3HHeJ_T0077885.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69295449 69364120 + Atp2b2 protein_coding processed_transcript MGP_C3HHeJ_T0077886.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69314906 69461529 + MGP_C3HHeJ_P0077886 Atp2b2 protein_coding protein_coding MGP_C3HHeJ_T0077887.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69314906 69460132 + MGP_C3HHeJ_P0077887 Atp2b2 protein_coding protein_coding MGP_C3HHeJ_T0077888.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69315075 69403105 + Atp2b2 protein_coding retained_intron MGP_C3HHeJ_T0077889.1 MGP_C3HHeJ_G0030590.1 mouse_genomes_project 6 69364120 69455518 + MGP_C3HHeJ_P0077889 Atp2b2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0015450.1 MGP_C3HHeJ_G0013554.1 mouse_genomes_project 6 138118155 138119061 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018090.1 MGP_C3HHeJ_G0015410.1 mouse_genomes_project 6 127447380 127463191 + Gm26728 processed_transcript antisense MGP_C3HHeJ_T0018091.1 MGP_C3HHeJ_G0015410.1 mouse_genomes_project 6 127447384 127448919 + Gm26728 processed_transcript retained_intron MGP_C3HHeJ_T0018092.1 MGP_C3HHeJ_G0015410.1 mouse_genomes_project 6 127447386 127452630 + Gm26728 processed_transcript antisense MGP_C3HHeJ_T0008537.1 MGP_C3HHeJ_G0006894.1 mouse_genomes_project 6 62393141 62401228 - 1700072O05Rik lincRNA lincRNA MGP_C3HHeJ_T0002012.1 MGP_C3HHeJ_G0001933.1 mouse_genomes_project 6 92182534 92184371 - TEC TEC MGP_C3HHeJ_T0001980.1 MGP_C3HHeJ_G0001901.1 mouse_genomes_project 6 71192630 71193186 + TEC TEC MGP_C3HHeJ_T0079984.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130461904 130467904 + Foxm1 protein_coding processed_transcript MGP_C3HHeJ_T0079985.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130461904 130475065 + MGP_C3HHeJ_P0079985 Foxm1 protein_coding protein_coding MGP_C3HHeJ_T0079986.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130464646 130472885 + MGP_C3HHeJ_P0079986 Foxm1 protein_coding protein_coding MGP_C3HHeJ_T0079987.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130465108 130472277 + MGP_C3HHeJ_P0079987 Foxm1 protein_coding protein_coding MGP_C3HHeJ_T0079988.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130466228 130471790 + MGP_C3HHeJ_P0079988 Foxm1 protein_coding protein_coding MGP_C3HHeJ_T0079989.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130466306 130471090 + Foxm1 protein_coding retained_intron MGP_C3HHeJ_T0079990.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130468381 130470290 + Foxm1 protein_coding retained_intron MGP_C3HHeJ_T0079991.1 MGP_C3HHeJ_G0031024.1 mouse_genomes_project 6 130469878 130472101 + Foxm1 protein_coding retained_intron MGP_C3HHeJ_T0075929.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8812317 8837915 + MGP_C3HHeJ_P0075929 Phf14 protein_coding protein_coding MGP_C3HHeJ_T0075930.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8812392 8862148 + MGP_C3HHeJ_P0075930 Phf14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075931.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8830385 8911550 + MGP_C3HHeJ_P0075931 Phf14 protein_coding protein_coding MGP_C3HHeJ_T0075932.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8830419 8911618 + MGP_C3HHeJ_P0075932 Phf14 protein_coding protein_coding MGP_C3HHeJ_T0075933.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8830420 8985003 + MGP_C3HHeJ_P0075933 Phf14 protein_coding protein_coding MGP_C3HHeJ_T0075934.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8830709 8942704 + MGP_C3HHeJ_P0075934 Phf14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0075935.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8831287 8887378 + MGP_C3HHeJ_P0075935 Phf14 protein_coding protein_coding MGP_C3HHeJ_T0075936.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8887983 8889575 + Phf14 protein_coding retained_intron MGP_C3HHeJ_T0075937.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8894409 8898847 + Phf14 protein_coding retained_intron MGP_C3HHeJ_T0075938.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8910356 8984898 + MGP_C3HHeJ_P0075938 Phf14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075939.1 MGP_C3HHeJ_G0030151.1 mouse_genomes_project 6 8944998 8950909 + Phf14 protein_coding retained_intron MGP_C3HHeJ_T0010699.1 MGP_C3HHeJ_G0008832.1 mouse_genomes_project 6 80728768 80728870 - Mir6373 miRNA miRNA MGP_C3HHeJ_T0078512.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177392 95183229 + MGP_C3HHeJ_P0078512 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078513.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177441 95179712 + MGP_C3HHeJ_P0078513 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078514.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177476 95183463 + MGP_C3HHeJ_P0078514 Abtb1 protein_coding protein_coding MGP_C3HHeJ_T0078515.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177482 95183453 + MGP_C3HHeJ_P0078515 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078516.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177494 95180532 + MGP_C3HHeJ_P0078516 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078517.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177510 95180923 + MGP_C3HHeJ_P0078517 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078518.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95177546 95180359 + Abtb1 protein_coding retained_intron MGP_C3HHeJ_T0078519.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95179787 95180720 + Abtb1 protein_coding retained_intron MGP_C3HHeJ_T0078520.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95180221 95181262 + MGP_C3HHeJ_P0078520 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078521.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95180296 95182692 + MGP_C3HHeJ_P0078521 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078522.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95180510 95182954 + MGP_C3HHeJ_P0078522 Abtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078523.1 MGP_C3HHeJ_G0030717.1 mouse_genomes_project 6 95180661 95183099 + Abtb1 protein_coding retained_intron MGP_C3HHeJ_T0102101.1 MGP_C3HHeJ_G0040066.1 mouse_genomes_project 6 93910807 93910979 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011554.1 MGP_C3HHeJ_G0009687.1 mouse_genomes_project 6 50800587 50800764 + Gm27543 misc_RNA misc_RNA MGP_C3HHeJ_T0005030.1 MGP_C3HHeJ_G0004285.1 mouse_genomes_project 6 137226320 137319706 - Gm44293 antisense antisense MGP_C3HHeJ_T0079744.1 MGP_C3HHeJ_G0030977.1 mouse_genomes_project 6 126806330 126814595 - MGP_C3HHeJ_P0079744 Lag3 protein_coding protein_coding MGP_C3HHeJ_T0079745.1 MGP_C3HHeJ_G0030977.1 mouse_genomes_project 6 126811505 126812957 - Lag3 protein_coding processed_transcript MGP_C3HHeJ_T0102128.1 MGP_C3HHeJ_G0040092.1 mouse_genomes_project 6 133634081 133684777 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008452.1 MGP_C3HHeJ_G0006836.1 mouse_genomes_project 6 28714186 28841488 - Lncpint lincRNA lincRNA MGP_C3HHeJ_T0008454.1 MGP_C3HHeJ_G0006836.1 mouse_genomes_project 6 28788621 28841447 - Lncpint lincRNA lincRNA MGP_C3HHeJ_T0008455.1 MGP_C3HHeJ_G0006836.1 mouse_genomes_project 6 28789574 28841434 - Lncpint lincRNA lincRNA MGP_C3HHeJ_T0008456.1 MGP_C3HHeJ_G0006836.1 mouse_genomes_project 6 28789622 28841360 - Lncpint lincRNA lincRNA MGP_C3HHeJ_T0078058.1 MGP_C3HHeJ_G0030618.1 mouse_genomes_project 6 70303981 70493372 + Srgap3 protein_coding retained_intron MGP_C3HHeJ_T0078059.1 MGP_C3HHeJ_G0030618.1 mouse_genomes_project 6 70303981 70544916 + MGP_C3HHeJ_P0078059 Srgap3 protein_coding protein_coding MGP_C3HHeJ_T0078060.1 MGP_C3HHeJ_G0030618.1 mouse_genomes_project 6 70304493 70544913 + MGP_C3HHeJ_P0078060 Srgap3 protein_coding protein_coding MGP_C3HHeJ_T0078061.1 MGP_C3HHeJ_G0030618.1 mouse_genomes_project 6 70425773 70464175 + Srgap3 protein_coding retained_intron MGP_C3HHeJ_T0078062.1 MGP_C3HHeJ_G0030618.1 mouse_genomes_project 6 70492998 70521417 + MGP_C3HHeJ_P0078062 Srgap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077869.1 MGP_C3HHeJ_G0030587.1 mouse_genomes_project 6 68707611 68794294 - MGP_C3HHeJ_P0077869 Hrh1 protein_coding protein_coding MGP_C3HHeJ_T0077870.1 MGP_C3HHeJ_G0030587.1 mouse_genomes_project 6 68708451 68788564 - MGP_C3HHeJ_P0077870 Hrh1 protein_coding protein_coding MGP_C3HHeJ_T0077871.1 MGP_C3HHeJ_G0030587.1 mouse_genomes_project 6 68708453 68733672 - MGP_C3HHeJ_P0077871 Hrh1 protein_coding protein_coding MGP_C3HHeJ_T0077872.1 MGP_C3HHeJ_G0030587.1 mouse_genomes_project 6 68708517 68788406 - MGP_C3HHeJ_P0077872 Hrh1 protein_coding protein_coding MGP_C3HHeJ_T0077873.1 MGP_C3HHeJ_G0030587.1 mouse_genomes_project 6 68711054 68794144 - MGP_C3HHeJ_P0077873 Hrh1 protein_coding protein_coding MGP_C3HHeJ_T0078862.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015056 100220492 - MGP_C3HHeJ_P0078862 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078863.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015056 100231414 - MGP_C3HHeJ_P0078863 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078864.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015057 100231089 - MGP_C3HHeJ_P0078864 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078865.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015057 100220493 - MGP_C3HHeJ_P0078865 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078866.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015057 100220489 - MGP_C3HHeJ_P0078866 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078867.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015075 100015633 - Dysf protein_coding processed_transcript MGP_C3HHeJ_T0078868.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015220 100231302 - MGP_C3HHeJ_P0078868 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078869.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015220 100231302 - MGP_C3HHeJ_P0078869 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078870.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015220 100231302 - MGP_C3HHeJ_P0078870 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078871.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015220 100231237 - MGP_C3HHeJ_P0078871 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078872.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015259 100220493 - MGP_C3HHeJ_P0078872 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078873.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015259 100220493 - MGP_C3HHeJ_P0078873 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078874.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015259 100220493 - MGP_C3HHeJ_P0078874 Dysf protein_coding protein_coding MGP_C3HHeJ_T0078875.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100015285 100231089 - MGP_C3HHeJ_P0078875 Dysf protein_coding unknown_likely_coding MGP_C3HHeJ_T0078876.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100079086 100084750 - Dysf protein_coding processed_transcript MGP_C3HHeJ_T0078877.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100115477 100126476 - Dysf protein_coding retained_intron MGP_C3HHeJ_T0078878.1 MGP_C3HHeJ_G0030787.1 mouse_genomes_project 6 100120157 100127654 - Dysf protein_coding processed_transcript MGP_C3HHeJ_T0078089.1 MGP_C3HHeJ_G0030626.1 mouse_genomes_project 6 74571607 74613079 - MGP_C3HHeJ_P0078089 Arl8b protein_coding protein_coding MGP_C3HHeJ_T0008418.1 MGP_C3HHeJ_G0006812.1 mouse_genomes_project 6 3776614 3780316 - Gm26774 lincRNA lincRNA MGP_C3HHeJ_T0080454.1 MGP_C3HHeJ_G0031158.1 mouse_genomes_project 6 144957669 145018877 - MGP_C3HHeJ_P0080454 Gm5724 protein_coding protein_coding MGP_C3HHeJ_T0001954.1 MGP_C3HHeJ_G0001876.1 mouse_genomes_project 6 53330057 53330469 + TEC TEC MGP_C3HHeJ_T0002131.1 MGP_C3HHeJ_G0002052.1 mouse_genomes_project 6 142947814 142949696 + TEC TEC MGP_C3HHeJ_T0102098.1 MGP_C3HHeJ_G0040063.1 mouse_genomes_project 6 60086610 60086875 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0077852.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68321266 68547276 - MGP_C3HHeJ_P0077852 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077853.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68321268 68547261 - MGP_C3HHeJ_P0077853 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077854.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68322691 68547244 - MGP_C3HHeJ_P0077854 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077855.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68322697 68461997 - Atg7 protein_coding processed_transcript MGP_C3HHeJ_T0077856.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68322697 68547244 - MGP_C3HHeJ_P0077856 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077857.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68322699 68325776 - Atg7 protein_coding processed_transcript MGP_C3HHeJ_T0077858.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68322700 68547246 - MGP_C3HHeJ_P0077858 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077859.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68322791 68547251 - MGP_C3HHeJ_P0077859 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077860.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68484931 68510156 - Atg7 protein_coding processed_transcript MGP_C3HHeJ_T0077861.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68504105 68547242 - MGP_C3HHeJ_P0077861 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077862.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68504122 68536859 - MGP_C3HHeJ_P0077862 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077863.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68504834 68507029 - Atg7 protein_coding retained_intron MGP_C3HHeJ_T0077864.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68505395 68547257 - Atg7 protein_coding retained_intron MGP_C3HHeJ_T0077865.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68505791 68540454 - MGP_C3HHeJ_P0077865 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077866.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68512321 68547255 - MGP_C3HHeJ_P0077866 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077867.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68515658 68531302 - MGP_C3HHeJ_P0077867 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0077868.1 MGP_C3HHeJ_G0030586.1 mouse_genomes_project 6 68516246 68547246 - MGP_C3HHeJ_P0077868 Atg7 protein_coding protein_coding MGP_C3HHeJ_T0015162.1 MGP_C3HHeJ_G0013266.1 mouse_genomes_project 6 48187208 48187481 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097916.1 MGP_C3HHeJ_G0036128.1 mouse_genomes_project 6 50781368 50781819 - pseudogene pseudogene MGP_C3HHeJ_T0004998.1 MGP_C3HHeJ_G0004257.1 mouse_genomes_project 6 118064444 118065682 + antisense antisense MGP_C3HHeJ_T0079615.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126238425 126256650 - MGP_C3HHeJ_P0079615 Pex5 protein_coding protein_coding MGP_C3HHeJ_T0079616.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126238426 126256016 - MGP_C3HHeJ_P0079616 Pex5 protein_coding protein_coding MGP_C3HHeJ_T0079617.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126238426 126256650 - MGP_C3HHeJ_P0079617 Pex5 protein_coding protein_coding MGP_C3HHeJ_T0079618.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126238426 126256446 - MGP_C3HHeJ_P0079618 Pex5 protein_coding protein_coding MGP_C3HHeJ_T0079619.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126238441 126256620 - MGP_C3HHeJ_P0079619 Pex5 protein_coding protein_coding MGP_C3HHeJ_T0079620.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126239520 126241200 - Pex5 protein_coding retained_intron MGP_C3HHeJ_T0079621.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126244715 126255625 - Pex5 protein_coding processed_transcript MGP_C3HHeJ_T0079622.1 MGP_C3HHeJ_G0030954.1 mouse_genomes_project 6 126245898 126246953 - Pex5 protein_coding retained_intron MGP_C3HHeJ_T0015379.1 MGP_C3HHeJ_G0013483.1 mouse_genomes_project 6 120290976 120291646 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004906.1 MGP_C3HHeJ_G0004203.1 mouse_genomes_project 6 69608508 69610636 + Gm44199 antisense antisense MGP_C3HHeJ_T0015304.1 MGP_C3HHeJ_G0013408.1 mouse_genomes_project 6 104776622 104777382 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015042.1 MGP_C3HHeJ_G0013146.1 mouse_genomes_project 6 586668 587056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015087.1 MGP_C3HHeJ_G0013191.1 mouse_genomes_project 6 16892468 16892575 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008619.1 MGP_C3HHeJ_G0006957.1 mouse_genomes_project 6 102380381 102387629 + 1700009C05Rik lincRNA lincRNA MGP_C3HHeJ_T0004921.1 MGP_C3HHeJ_G0004212.1 mouse_genomes_project 6 82364541 82386732 - Gm26911 antisense antisense MGP_C3HHeJ_T0004922.1 MGP_C3HHeJ_G0004212.1 mouse_genomes_project 6 82374397 82386749 - Gm26911 antisense antisense MGP_C3HHeJ_T0004923.1 MGP_C3HHeJ_G0004212.1 mouse_genomes_project 6 82375781 82386660 - Gm26911 antisense antisense MGP_C3HHeJ_T0002147.1 MGP_C3HHeJ_G0002068.1 mouse_genomes_project 6 151640769 151644248 + TEC TEC MGP_C3HHeJ_T0001965.1 MGP_C3HHeJ_G0001887.1 mouse_genomes_project 6 65155839 65157031 + TEC TEC MGP_C3HHeJ_T0000185.1 MGP_C3HHeJ_G0000140.1 mouse_genomes_project 6 116496342 116496840 - MGP_C3HHeJ_P0000185 Igkv16-104 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000276.1 MGP_C3HHeJ_G0000226.1 mouse_genomes_project 6 115498333 115498806 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0080450.1 MGP_C3HHeJ_G0031157.1 mouse_genomes_project 6 144881235 144939908 + MGP_C3HHeJ_P0080450 Slco1b2 protein_coding protein_coding MGP_C3HHeJ_T0080451.1 MGP_C3HHeJ_G0031157.1 mouse_genomes_project 6 144886394 144938868 + MGP_C3HHeJ_P0080451 Slco1b2 protein_coding protein_coding MGP_C3HHeJ_T0080452.1 MGP_C3HHeJ_G0031157.1 mouse_genomes_project 6 144905773 144910744 + Slco1b2 protein_coding retained_intron MGP_C3HHeJ_T0080453.1 MGP_C3HHeJ_G0031157.1 mouse_genomes_project 6 144934507 144938871 + Slco1b2 protein_coding retained_intron MGP_C3HHeJ_T0008535.1 MGP_C3HHeJ_G0006892.1 mouse_genomes_project 6 60108787 60113338 - Gm43893 lincRNA lincRNA MGP_C3HHeJ_T0015340.1 MGP_C3HHeJ_G0013444.1 mouse_genomes_project 6 116839997 116840674 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000263.1 MGP_C3HHeJ_G0000213.1 mouse_genomes_project 6 114403311 114403545 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0002084.1 MGP_C3HHeJ_G0002005.1 mouse_genomes_project 6 111835344 111838190 + TEC TEC MGP_C3HHeJ_T0015151.1 MGP_C3HHeJ_G0013255.1 mouse_genomes_project 6 47350130 47350459 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015311.1 MGP_C3HHeJ_G0013415.1 mouse_genomes_project 6 108243585 108244868 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010683.1 MGP_C3HHeJ_G0008816.1 mouse_genomes_project 6 50781369 50781454 - Mir196b miRNA miRNA MGP_C3HHeJ_T0099536.1 MGP_C3HHeJ_G0037730.1 mouse_genomes_project 6 102664297 102664456 - Gm26264 snRNA snRNA MGP_C3HHeJ_T0008585.1 MGP_C3HHeJ_G0006934.1 mouse_genomes_project 6 93477310 93479068 + Gm44117 lincRNA lincRNA MGP_C3HHeJ_T0015374.1 MGP_C3HHeJ_G0013478.1 mouse_genomes_project 6 120000881 120001675 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015404.1 MGP_C3HHeJ_G0013508.1 mouse_genomes_project 6 127142088 127142404 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002085.1 MGP_C3HHeJ_G0002006.1 mouse_genomes_project 6 112011993 112013554 - TEC TEC MGP_C3HHeJ_T0078300.1 MGP_C3HHeJ_G0030669.1 mouse_genomes_project 6 91148413 91498760 + MGP_C3HHeJ_P0078300 Prickle2 protein_coding protein_coding MGP_C3HHeJ_T0078301.1 MGP_C3HHeJ_G0030669.1 mouse_genomes_project 6 91288355 91498760 + MGP_C3HHeJ_P0078301 Prickle2 protein_coding protein_coding MGP_C3HHeJ_T0078302.1 MGP_C3HHeJ_G0030669.1 mouse_genomes_project 6 91321671 91498758 + MGP_C3HHeJ_P0078302 Prickle2 protein_coding protein_coding MGP_C3HHeJ_T0078303.1 MGP_C3HHeJ_G0030669.1 mouse_genomes_project 6 91375578 91494283 + MGP_C3HHeJ_P0078303 Prickle2 protein_coding protein_coding MGP_C3HHeJ_T0015358.1 MGP_C3HHeJ_G0013462.1 mouse_genomes_project 6 118610587 118612502 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079972.1 MGP_C3HHeJ_G0031022.1 mouse_genomes_project 6 130417993 130454350 - MGP_C3HHeJ_P0079972 Tulp3 protein_coding protein_coding MGP_C3HHeJ_T0079973.1 MGP_C3HHeJ_G0031022.1 mouse_genomes_project 6 130419816 130422352 - Tulp3 protein_coding processed_transcript MGP_C3HHeJ_T0079974.1 MGP_C3HHeJ_G0031022.1 mouse_genomes_project 6 130429216 130454340 - Tulp3 protein_coding retained_intron MGP_C3HHeJ_T0079975.1 MGP_C3HHeJ_G0031022.1 mouse_genomes_project 6 130431807 130454314 - MGP_C3HHeJ_P0079975 Tulp3 protein_coding protein_coding MGP_C3HHeJ_T0079976.1 MGP_C3HHeJ_G0031022.1 mouse_genomes_project 6 130439884 130443307 - Tulp3 protein_coding retained_intron MGP_C3HHeJ_T0079977.1 MGP_C3HHeJ_G0031022.1 mouse_genomes_project 6 130440563 130454324 - MGP_C3HHeJ_P0079977 Tulp3 protein_coding protein_coding MGP_C3HHeJ_T0015245.1 MGP_C3HHeJ_G0013349.1 mouse_genomes_project 6 80869219 80871281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080155.1 MGP_C3HHeJ_G0031079.1 mouse_genomes_project 6 134251598 134252525 - MGP_C3HHeJ_P0080155 Tas2r106 protein_coding protein_coding MGP_C3HHeJ_T0001894.1 MGP_C3HHeJ_G0001816.1 mouse_genomes_project 6 18435706 18442919 + TEC TEC MGP_C3HHeJ_T0008558.1 MGP_C3HHeJ_G0006913.1 mouse_genomes_project 6 76145270 76255760 + Gm44398 lincRNA lincRNA MGP_C3HHeJ_T0002522.1 MGP_C3HHeJ_G0002434.1 mouse_genomes_project 6 39564736 39564784 + MGP_C3HHeJ_P0002522 Trbj1-2 TR_J_gene TR_J_gene MGP_C3HHeJ_T0002145.1 MGP_C3HHeJ_G0002066.1 mouse_genomes_project 6 150243677 150244605 - TEC TEC MGP_C3HHeJ_T0075974.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 11866564 12429439 + MGP_C3HHeJ_P0075974 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075975.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 11866603 12397854 + Foxp2 protein_coding retained_intron MGP_C3HHeJ_T0075976.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 11866666 11951525 + Foxp2 protein_coding processed_transcript MGP_C3HHeJ_T0075977.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 11866692 12267900 + MGP_C3HHeJ_P0075977 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075978.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 11866693 12268882 + Foxp2 protein_coding retained_intron MGP_C3HHeJ_T0075979.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 11868690 12166788 + Foxp2 protein_coding processed_transcript MGP_C3HHeJ_T0075980.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12154514 12169174 + MGP_C3HHeJ_P0075980 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075981.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12155312 12428663 + MGP_C3HHeJ_P0075981 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075982.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12155312 12425472 + MGP_C3HHeJ_P0075982 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075983.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12155312 12425753 + MGP_C3HHeJ_P0075983 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075984.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12155369 12380757 + MGP_C3HHeJ_P0075984 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075985.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12166777 12383785 + Foxp2 protein_coding retained_intron MGP_C3HHeJ_T0075986.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12166779 12391591 + MGP_C3HHeJ_P0075986 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075987.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12166779 12365964 + MGP_C3HHeJ_P0075987 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075988.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12166792 12391591 + MGP_C3HHeJ_P0075988 Foxp2 protein_coding protein_coding MGP_C3HHeJ_T0075989.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12227532 12267900 + Foxp2 protein_coding processed_transcript MGP_C3HHeJ_T0075990.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12306675 12307853 + Foxp2 protein_coding retained_intron MGP_C3HHeJ_T0075991.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12362833 12364233 + Foxp2 protein_coding processed_transcript MGP_C3HHeJ_T0075992.1 MGP_C3HHeJ_G0030160.1 mouse_genomes_project 6 12362833 12426497 + MGP_C3HHeJ_P0075992 Foxp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011550.1 MGP_C3HHeJ_G0009683.1 mouse_genomes_project 6 50797687 50797874 + Gm27492 misc_RNA misc_RNA MGP_C3HHeJ_T0017998.1 MGP_C3HHeJ_G0015383.1 mouse_genomes_project 6 37399 47466 - processed_transcript lincRNA MGP_C3HHeJ_T0017999.1 MGP_C3HHeJ_G0015383.1 mouse_genomes_project 6 39711 47505 - processed_transcript lincRNA MGP_C3HHeJ_T0018000.1 MGP_C3HHeJ_G0015383.1 mouse_genomes_project 6 39922 47537 - processed_transcript retained_intron MGP_C3HHeJ_T0077706.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66666703 66720138 + MGP_C3HHeJ_P0077706 Alox5 protein_coding protein_coding MGP_C3HHeJ_T0077707.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66666750 66719909 + Alox5 protein_coding retained_intron MGP_C3HHeJ_T0077708.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66666857 66719576 + MGP_C3HHeJ_P0077708 Alox5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077709.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66666857 66719464 + MGP_C3HHeJ_P0077709 Alox5 protein_coding protein_coding MGP_C3HHeJ_T0077710.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66666857 66719464 + MGP_C3HHeJ_P0077710 Alox5 protein_coding protein_coding MGP_C3HHeJ_T0077711.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66705046 66714721 + Alox5 protein_coding processed_transcript MGP_C3HHeJ_T0077712.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66716155 66717604 + Alox5 protein_coding retained_intron MGP_C3HHeJ_T0077713.1 MGP_C3HHeJ_G0030561.1 mouse_genomes_project 6 66717408 66719907 + Alox5 protein_coding retained_intron MGP_C3HHeJ_T0002525.1 MGP_C3HHeJ_G0002436.1 mouse_genomes_project 6 39565546 39565597 + MGP_C3HHeJ_P0002525 Trbj1-4 TR_J_gene TR_J_gene MGP_C3HHeJ_T0008621.1 MGP_C3HHeJ_G0006959.1 mouse_genomes_project 6 105387785 105388105 + Gm29005 lincRNA lincRNA MGP_C3HHeJ_T0099520.1 MGP_C3HHeJ_G0037714.1 mouse_genomes_project 6 62590477 62590583 + Gm24592 snRNA snRNA MGP_C3HHeJ_T0015136.1 MGP_C3HHeJ_G0013240.1 mouse_genomes_project 6 41497546 41499294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080179.1 MGP_C3HHeJ_G0031102.1 mouse_genomes_project 6 135843904 135844905 - MGP_C3HHeJ_P0080179 Tas2r140 protein_coding protein_coding MGP_C3HHeJ_T0004997.1 MGP_C3HHeJ_G0004256.1 mouse_genomes_project 6 117795465 117861570 + antisense antisense MGP_C3HHeJ_T0000272.1 MGP_C3HHeJ_G0000222.1 mouse_genomes_project 6 115193346 115197128 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0008601.1 MGP_C3HHeJ_G0006945.1 mouse_genomes_project 6 97421676 97422281 + Gm44214 lincRNA lincRNA MGP_C3HHeJ_T0010691.1 MGP_C3HHeJ_G0008824.1 mouse_genomes_project 6 67367242 67367305 - Mir7660 miRNA miRNA MGP_C3HHeJ_T0008673.1 MGP_C3HHeJ_G0007000.1 mouse_genomes_project 6 138696888 138708306 + Gm14329 lincRNA lincRNA MGP_C3HHeJ_T0099513.1 MGP_C3HHeJ_G0037707.1 mouse_genomes_project 6 39636333 39636395 - Gm27549 snRNA snRNA MGP_C3HHeJ_T0015402.1 MGP_C3HHeJ_G0013506.1 mouse_genomes_project 6 126863176 126866083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008650.1 MGP_C3HHeJ_G0006987.1 mouse_genomes_project 6 130280298 130293912 - Gm10010 lincRNA lincRNA MGP_C3HHeJ_T0008516.1 MGP_C3HHeJ_G0006878.1 mouse_genomes_project 6 50556798 50572421 + Gm44077 lincRNA lincRNA MGP_C3HHeJ_T0002093.1 MGP_C3HHeJ_G0002014.1 mouse_genomes_project 6 113279859 113282704 - TEC TEC MGP_C3HHeJ_T0076953.1 MGP_C3HHeJ_G0030379.1 mouse_genomes_project 6 46149895 46161428 - MGP_C3HHeJ_P0076953 Zfp786 protein_coding protein_coding MGP_C3HHeJ_T0076954.1 MGP_C3HHeJ_G0030379.1 mouse_genomes_project 6 46152287 46161129 - Zfp786 protein_coding processed_transcript MGP_C3HHeJ_T0076955.1 MGP_C3HHeJ_G0030379.1 mouse_genomes_project 6 46158743 46161065 - Zfp786 protein_coding retained_intron MGP_C3HHeJ_T0102082.1 MGP_C3HHeJ_G0040047.1 mouse_genomes_project 6 41233624 41233931 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001912.1 MGP_C3HHeJ_G0001834.1 mouse_genomes_project 6 31107090 31108702 + TEC TEC MGP_C3HHeJ_T0077197.1 MGP_C3HHeJ_G0030438.1 mouse_genomes_project 6 50753149 50755984 - MGP_C3HHeJ_P0077197 Hoxa5 protein_coding protein_coding MGP_C3HHeJ_T0102130.1 MGP_C3HHeJ_G0040094.1 mouse_genomes_project 6 135154453 135158660 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011548.1 MGP_C3HHeJ_G0009681.1 mouse_genomes_project 6 50711827 50711970 + Gm27477 misc_RNA misc_RNA MGP_C3HHeJ_T0078280.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89508596 90146346 + MGP_C3HHeJ_P0078280 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078281.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89508618 90132597 + MGP_C3HHeJ_P0078281 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078282.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89509191 90146346 + MGP_C3HHeJ_P0078282 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078283.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89509191 90146346 + MGP_C3HHeJ_P0078283 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078284.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89509488 89665194 + Magi1 protein_coding processed_transcript MGP_C3HHeJ_T0078285.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89863228 90132706 + MGP_C3HHeJ_P0078285 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078286.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89893343 90138694 + MGP_C3HHeJ_P0078286 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078287.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89893479 90135026 + MGP_C3HHeJ_P0078287 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078288.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89894069 90133540 + MGP_C3HHeJ_P0078288 Magi1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078289.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 89894527 90041178 + MGP_C3HHeJ_P0078289 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0078290.1 MGP_C3HHeJ_G0030665.1 mouse_genomes_project 6 90022410 90029664 + MGP_C3HHeJ_P0078290 Magi1 protein_coding protein_coding MGP_C3HHeJ_T0001935.1 MGP_C3HHeJ_G0001857.1 mouse_genomes_project 6 44129134 44132925 + TEC TEC MGP_C3HHeJ_T0010731.1 MGP_C3HHeJ_G0008864.1 mouse_genomes_project 6 138705000 138705105 + Gm22892 miRNA miRNA MGP_C3HHeJ_T0004913.1 MGP_C3HHeJ_G0004207.1 mouse_genomes_project 6 70987577 70990558 + 5031434C07Rik antisense antisense MGP_C3HHeJ_T0004914.1 MGP_C3HHeJ_G0004207.1 mouse_genomes_project 6 70987578 70990903 + 5031434C07Rik antisense antisense MGP_C3HHeJ_T0080523.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146281715 146373167 - MGP_C3HHeJ_P0080523 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080524.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146281715 146373167 - MGP_C3HHeJ_P0080524 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080525.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146281720 146373150 - MGP_C3HHeJ_P0080525 C2cd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080526.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146281723 146372838 - MGP_C3HHeJ_P0080526 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080527.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146282277 146372829 - MGP_C3HHeJ_P0080527 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080528.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146282528 146373131 - MGP_C3HHeJ_P0080528 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080529.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146282534 146284508 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0080530.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146282732 146373065 - MGP_C3HHeJ_P0080530 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080531.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146289376 146292369 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0080532.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146300184 146373167 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0080533.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146314279 146340350 - MGP_C3HHeJ_P0080533 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080534.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146320502 146323847 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0080535.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146343844 146372911 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0080536.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146345917 146354682 - C2cd5 protein_coding processed_transcript MGP_C3HHeJ_T0080537.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146351250 146353230 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0080538.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146351617 146373201 - MGP_C3HHeJ_P0080538 C2cd5 protein_coding protein_coding MGP_C3HHeJ_T0080539.1 MGP_C3HHeJ_G0031176.1 mouse_genomes_project 6 146356112 146373138 - C2cd5 protein_coding retained_intron MGP_C3HHeJ_T0076777.1 MGP_C3HHeJ_G0030314.1 mouse_genomes_project 6 38862294 38867412 - MGP_C3HHeJ_P0076777 Prss58 protein_coding protein_coding MGP_C3HHeJ_T0002531.1 MGP_C3HHeJ_G0002441.1 mouse_genomes_project 6 39573813 39573864 + MGP_C3HHeJ_P0002531 Trbj2-2 TR_J_gene TR_J_gene MGP_C3HHeJ_T0079580.1 MGP_C3HHeJ_G0030936.1 mouse_genomes_project 6 124655433 124686006 + MGP_C3HHeJ_P0079580 Clec4a4 protein_coding protein_coding MGP_C3HHeJ_T0000275.1 MGP_C3HHeJ_G0000225.1 mouse_genomes_project 6 115490482 115491015 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0080408.1 MGP_C3HHeJ_G0031149.1 mouse_genomes_project 6 143007684 143142626 + MGP_C3HHeJ_P0080408 Pik3c2g protein_coding protein_coding MGP_C3HHeJ_T0000282.1 MGP_C3HHeJ_G0000232.1 mouse_genomes_project 6 115997855 115998251 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0001906.1 MGP_C3HHeJ_G0001828.1 mouse_genomes_project 6 27452409 27456021 - TEC TEC MGP_C3HHeJ_T0008678.1 MGP_C3HHeJ_G0007004.1 mouse_genomes_project 6 145120917 145129780 + Gm44244 lincRNA lincRNA MGP_C3HHeJ_T0079442.1 MGP_C3HHeJ_G0030906.1 mouse_genomes_project 6 120442115 120444237 - MGP_C3HHeJ_P0079442 Atoh1 protein_coding protein_coding MGP_C3HHeJ_T0080617.1 MGP_C3HHeJ_G0031188.1 mouse_genomes_project 6 149336657 149369704 + MGP_C3HHeJ_P0080617 Sspn protein_coding protein_coding MGP_C3HHeJ_T0080618.1 MGP_C3HHeJ_G0031188.1 mouse_genomes_project 6 149338913 149369704 + MGP_C3HHeJ_P0080618 Sspn protein_coding protein_coding MGP_C3HHeJ_T0080619.1 MGP_C3HHeJ_G0031188.1 mouse_genomes_project 6 149358043 149369704 + MGP_C3HHeJ_P0080619 Sspn protein_coding protein_coding MGP_C3HHeJ_T0015186.1 MGP_C3HHeJ_G0013290.1 mouse_genomes_project 6 58897425 58898383 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008505.1 MGP_C3HHeJ_G0006870.1 mouse_genomes_project 6 49284202 49325104 + C530044C16Rik lincRNA lincRNA MGP_C3HHeJ_T0008506.1 MGP_C3HHeJ_G0006870.1 mouse_genomes_project 6 49284411 49325243 + C530044C16Rik lincRNA lincRNA MGP_C3HHeJ_T0077783.1 MGP_C3HHeJ_G0030571.1 mouse_genomes_project 6 67293956 67306400 + MGP_C3HHeJ_P0077783 Mbd4 protein_coding protein_coding MGP_C3HHeJ_T0077784.1 MGP_C3HHeJ_G0030571.1 mouse_genomes_project 6 67293962 67304740 + MGP_C3HHeJ_P0077784 Mbd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077785.1 MGP_C3HHeJ_G0030571.1 mouse_genomes_project 6 67294039 67299632 + MGP_C3HHeJ_P0077785 Mbd4 protein_coding protein_coding MGP_C3HHeJ_T0077786.1 MGP_C3HHeJ_G0030571.1 mouse_genomes_project 6 67298345 67304740 + MGP_C3HHeJ_P0077786 Mbd4 protein_coding protein_coding MGP_C3HHeJ_T0077787.1 MGP_C3HHeJ_G0030571.1 mouse_genomes_project 6 67298621 67305868 + Mbd4 protein_coding processed_transcript MGP_C3HHeJ_T0002119.1 MGP_C3HHeJ_G0002040.1 mouse_genomes_project 6 136999121 137001995 + TEC TEC MGP_C3HHeJ_T0010692.1 MGP_C3HHeJ_G0008825.1 mouse_genomes_project 6 68074530 68074625 - Gm24767 miRNA miRNA MGP_C3HHeJ_T0076895.1 MGP_C3HHeJ_G0030364.1 mouse_genomes_project 6 41008494 41009544 + MGP_C3HHeJ_P0076895 Olfr444 protein_coding protein_coding MGP_C3HHeJ_T0018006.1 MGP_C3HHeJ_G0015385.1 mouse_genomes_project 6 13434358 13446976 - Gm43996 processed_transcript lincRNA MGP_C3HHeJ_T0018007.1 MGP_C3HHeJ_G0015385.1 mouse_genomes_project 6 13445262 13446930 - Gm43996 processed_transcript retained_intron MGP_C3HHeJ_T0002071.1 MGP_C3HHeJ_G0001992.1 mouse_genomes_project 6 106754866 106758102 + TEC TEC MGP_C3HHeJ_T0099500.1 MGP_C3HHeJ_G0037694.1 mouse_genomes_project 6 11398475 11398578 - Gm23013 snRNA snRNA MGP_C3HHeJ_T0011560.1 MGP_C3HHeJ_G0009693.1 mouse_genomes_project 6 67393245 67393495 + Gm27853 misc_RNA misc_RNA MGP_C3HHeJ_T0078175.1 MGP_C3HHeJ_G0030646.1 mouse_genomes_project 6 83973519 84404815 + MGP_C3HHeJ_P0078175 Gm20696 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078177.1 MGP_C3HHeJ_G0030646.1 mouse_genomes_project 6 84009183 84220397 + Gm20696 protein_coding retained_intron MGP_C3HHeJ_T0078182.1 MGP_C3HHeJ_G0030646.1 mouse_genomes_project 6 84208725 84220428 + Gm20696 protein_coding retained_intron MGP_C3HHeJ_T0001884.1 MGP_C3HHeJ_G0001806.1 mouse_genomes_project 6 4657094 4658966 + TEC TEC MGP_C3HHeJ_T0076036.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14709852 14843534 + St7 protein_coding retained_intron MGP_C3HHeJ_T0076037.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710865 14977930 + MGP_C3HHeJ_P0076037 St7 protein_coding protein_coding MGP_C3HHeJ_T0076038.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710912 14977930 + MGP_C3HHeJ_P0076038 St7 protein_coding protein_coding MGP_C3HHeJ_T0076039.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710950 14977874 + MGP_C3HHeJ_P0076039 St7 protein_coding protein_coding MGP_C3HHeJ_T0076040.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710950 14977933 + MGP_C3HHeJ_P0076040 St7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076041.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710950 14879740 + MGP_C3HHeJ_P0076041 St7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076042.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710950 14977874 + MGP_C3HHeJ_P0076042 St7 protein_coding protein_coding MGP_C3HHeJ_T0076043.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14710950 14977874 + MGP_C3HHeJ_P0076043 St7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076044.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14711085 14977874 + MGP_C3HHeJ_P0076044 St7 protein_coding protein_coding MGP_C3HHeJ_T0076045.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14763997 14977874 + MGP_C3HHeJ_P0076045 St7 protein_coding protein_coding MGP_C3HHeJ_T0076046.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14763997 14977874 + MGP_C3HHeJ_P0076046 St7 protein_coding protein_coding MGP_C3HHeJ_T0076047.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14769917 14941166 + St7 protein_coding processed_transcript MGP_C3HHeJ_T0076048.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14769917 14977933 + MGP_C3HHeJ_P0076048 St7 protein_coding protein_coding MGP_C3HHeJ_T0076049.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14769963 14977928 + MGP_C3HHeJ_P0076049 St7 protein_coding protein_coding MGP_C3HHeJ_T0076050.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14770039 14861078 + St7 protein_coding retained_intron MGP_C3HHeJ_T0076051.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14770076 14977930 + St7 protein_coding retained_intron MGP_C3HHeJ_T0076052.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14770139 14977909 + St7 protein_coding retained_intron MGP_C3HHeJ_T0076053.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14864895 14872822 + St7 protein_coding processed_transcript MGP_C3HHeJ_T0076054.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14864914 14939581 + St7 protein_coding processed_transcript MGP_C3HHeJ_T0076055.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14879695 14941152 + St7 protein_coding processed_transcript MGP_C3HHeJ_T0076056.1 MGP_C3HHeJ_G0030168.1 mouse_genomes_project 6 14940242 14977843 + St7 protein_coding processed_transcript MGP_C3HHeJ_T0015468.1 MGP_C3HHeJ_G0013572.1 mouse_genomes_project 6 148690019 148691015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008633.1 MGP_C3HHeJ_G0006971.1 mouse_genomes_project 6 113397292 113398593 - Gm44427 lincRNA lincRNA MGP_C3HHeJ_T0077052.1 MGP_C3HHeJ_G0030403.1 mouse_genomes_project 6 47115908 47121901 + MGP_C3HHeJ_P0077052 Gimap7 protein_coding protein_coding MGP_C3HHeJ_T0077054.1 MGP_C3HHeJ_G0030403.1 mouse_genomes_project 6 47115944 47121004 + MGP_C3HHeJ_P0077054 Gimap7 protein_coding protein_coding MGP_C3HHeJ_T0077055.1 MGP_C3HHeJ_G0030403.1 mouse_genomes_project 6 47115952 47116944 + Gimap7 protein_coding retained_intron MGP_C3HHeJ_T0004976.1 MGP_C3HHeJ_G0004243.1 mouse_genomes_project 6 101086745 101090147 + Gm15624 antisense antisense MGP_C3HHeJ_T0004977.1 MGP_C3HHeJ_G0004243.1 mouse_genomes_project 6 101086767 101093349 + Gm15624 antisense antisense MGP_C3HHeJ_T0004978.1 MGP_C3HHeJ_G0004243.1 mouse_genomes_project 6 101086946 101089697 + Gm15624 antisense antisense MGP_C3HHeJ_T0018059.1 MGP_C3HHeJ_G0015399.1 mouse_genomes_project 6 88406337 88454343 + AY512915 processed_transcript lincRNA MGP_C3HHeJ_T0018060.1 MGP_C3HHeJ_G0015399.1 mouse_genomes_project 6 88406339 88489122 + AY512915 processed_transcript antisense MGP_C3HHeJ_T0018061.1 MGP_C3HHeJ_G0015399.1 mouse_genomes_project 6 88406352 88468222 + AY512915 processed_transcript antisense MGP_C3HHeJ_T0018062.1 MGP_C3HHeJ_G0015399.1 mouse_genomes_project 6 88406353 88412895 + AY512915 processed_transcript processed_transcript MGP_C3HHeJ_T0018063.1 MGP_C3HHeJ_G0015399.1 mouse_genomes_project 6 88406359 88427097 + AY512915 processed_transcript antisense MGP_C3HHeJ_T0077339.1 MGP_C3HHeJ_G0030469.1 mouse_genomes_project 6 54344541 54347985 - MGP_C3HHeJ_P0077339 Neurod6 protein_coding protein_coding MGP_C3HHeJ_T0077632.1 MGP_C3HHeJ_G0030541.1 mouse_genomes_project 6 64492880 64553527 + MGP_C3HHeJ_P0077632 Ankrd26 protein_coding protein_coding MGP_C3HHeJ_T0077633.1 MGP_C3HHeJ_G0030541.1 mouse_genomes_project 6 64506010 64512183 + Ankrd26 protein_coding retained_intron MGP_C3HHeJ_T0077634.1 MGP_C3HHeJ_G0030541.1 mouse_genomes_project 6 64531779 64536836 + Ankrd26 protein_coding retained_intron MGP_C3HHeJ_T0008475.1 MGP_C3HHeJ_G0006852.1 mouse_genomes_project 6 32355529 32358048 - Gm13861 lincRNA lincRNA MGP_C3HHeJ_T0076771.1 MGP_C3HHeJ_G0030311.1 mouse_genomes_project 6 38549675 38550671 - MGP_C3HHeJ_P0076771 Tas2r138 protein_coding protein_coding MGP_C3HHeJ_T0077064.1 MGP_C3HHeJ_G0030406.1 mouse_genomes_project 6 47166655 47173412 - MGP_C3HHeJ_P0077064 Gimap3 protein_coding protein_coding MGP_C3HHeJ_T0077065.1 MGP_C3HHeJ_G0030406.1 mouse_genomes_project 6 47166657 47169151 - MGP_C3HHeJ_P0077065 Gimap3 protein_coding protein_coding MGP_C3HHeJ_T0015138.1 MGP_C3HHeJ_G0013242.1 mouse_genomes_project 6 41998354 41999206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079062.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101208578 101212554 + Htra2 protein_coding retained_intron MGP_C3HHeJ_T0079064.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101208686 101210814 + Htra2 protein_coding processed_transcript MGP_C3HHeJ_T0079065.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101209280 101212572 + MGP_C3HHeJ_P0079065 Htra2 protein_coding protein_coding MGP_C3HHeJ_T0079066.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101209280 101212572 + MGP_C3HHeJ_P0079066 Htra2 protein_coding protein_coding MGP_C3HHeJ_T0079067.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101209280 101212558 + MGP_C3HHeJ_P0079067 Htra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079068.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101209409 101212572 + MGP_C3HHeJ_P0079068 Htra2 protein_coding protein_coding MGP_C3HHeJ_T0079069.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101209814 101212089 + MGP_C3HHeJ_P0079069 Htra2 protein_coding protein_coding MGP_C3HHeJ_T0079070.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101209966 101210705 + Htra2 protein_coding processed_transcript MGP_C3HHeJ_T0079071.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101210014 101212352 + Htra2 protein_coding retained_intron MGP_C3HHeJ_T0079072.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101210014 101212361 + MGP_C3HHeJ_P0079072 Htra2 protein_coding protein_coding MGP_C3HHeJ_T0079073.1 MGP_C3HHeJ_G0030820.1 mouse_genomes_project 6 101210165 101212451 + MGP_C3HHeJ_P0079073 Htra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002615.1 MGP_C3HHeJ_G0002508.1 mouse_genomes_project 6 39101804 39102241 + MGP_C3HHeJ_P0002615 Trbv13-2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002669.1 MGP_C3HHeJ_G0002551.1 mouse_genomes_project 6 39087407 39087667 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0100789.1 MGP_C3HHeJ_G0038983.1 mouse_genomes_project 6 117198447 117198585 + Gm22425 snoRNA snoRNA MGP_C3HHeJ_T0076887.1 MGP_C3HHeJ_G0030359.1 mouse_genomes_project 6 40860266 40861199 + MGP_C3HHeJ_P0076887 Olfr450 protein_coding protein_coding MGP_C3HHeJ_T0002075.1 MGP_C3HHeJ_G0001996.1 mouse_genomes_project 6 106923915 106926097 + TEC TEC MGP_C3HHeJ_T0002632.1 MGP_C3HHeJ_G0002521.1 mouse_genomes_project 6 39588542 39589223 - MGP_C3HHeJ_P0002632 Trbv31 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002633.1 MGP_C3HHeJ_G0002521.1 mouse_genomes_project 6 39588544 39589304 - MGP_C3HHeJ_P0002633 Trbv31 TR_V_gene TR_V_gene MGP_C3HHeJ_T0078699.1 MGP_C3HHeJ_G0030752.1 mouse_genomes_project 6 97479928 97481475 - MGP_C3HHeJ_P0078699 Asprv1 protein_coding protein_coding MGP_C3HHeJ_T0005017.1 MGP_C3HHeJ_G0004275.1 mouse_genomes_project 6 129190044 129255418 + 9330179D12Rik antisense antisense MGP_C3HHeJ_T0005018.1 MGP_C3HHeJ_G0004275.1 mouse_genomes_project 6 129190281 129255710 + 9330179D12Rik antisense antisense MGP_C3HHeJ_T0001997.1 MGP_C3HHeJ_G0001918.1 mouse_genomes_project 6 83346729 83347819 + TEC TEC MGP_C3HHeJ_T0078294.1 MGP_C3HHeJ_G0030667.1 mouse_genomes_project 6 90966266 90981517 - MGP_C3HHeJ_P0078294 Gm15737 protein_coding protein_coding MGP_C3HHeJ_T0078437.1 MGP_C3HHeJ_G0030695.1 mouse_genomes_project 6 93631488 93635713 - MGP_C3HHeJ_P0078437 BC048671 protein_coding protein_coding MGP_C3HHeJ_T0078438.1 MGP_C3HHeJ_G0030695.1 mouse_genomes_project 6 93631488 93634816 - MGP_C3HHeJ_P0078438 BC048671 protein_coding protein_coding MGP_C3HHeJ_T0005558.1 MGP_C3HHeJ_G0004672.1 mouse_genomes_project 6 96391643 96400238 - E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0005559.1 MGP_C3HHeJ_G0004672.1 mouse_genomes_project 6 96392430 96400238 - E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0005560.1 MGP_C3HHeJ_G0004672.1 mouse_genomes_project 6 96393381 96400286 - E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0004968.1 MGP_C3HHeJ_G0004240.1 mouse_genomes_project 6 100227882 100231106 + Gm43918 antisense antisense MGP_C3HHeJ_T0076161.1 MGP_C3HHeJ_G0030195.1 mouse_genomes_project 6 22070487 22090379 + MGP_C3HHeJ_P0076161 Hyal4 protein_coding protein_coding MGP_C3HHeJ_T0015248.1 MGP_C3HHeJ_G0013352.1 mouse_genomes_project 6 82438669 82438909 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005014.1 MGP_C3HHeJ_G0004272.1 mouse_genomes_project 6 128854820 128857624 + Gm42574 antisense antisense MGP_C3HHeJ_T0078957.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100882422 100895221 - MGP_C3HHeJ_P0078957 Bola3 protein_coding protein_coding MGP_C3HHeJ_T0078958.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100883311 100891354 - Bola3 protein_coding processed_transcript MGP_C3HHeJ_T0078959.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100884142 100893627 - Bola3 protein_coding retained_intron MGP_C3HHeJ_T0078960.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100884162 100895520 - MGP_C3HHeJ_P0078960 Bola3 protein_coding protein_coding MGP_C3HHeJ_T0078961.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100884187 100895451 - MGP_C3HHeJ_P0078961 Bola3 protein_coding protein_coding MGP_C3HHeJ_T0078962.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100884225 100892572 - Bola3 protein_coding processed_transcript MGP_C3HHeJ_T0078963.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100891458 100893627 - Bola3 protein_coding retained_intron MGP_C3HHeJ_T0078964.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100891469 100895147 - Bola3 protein_coding retained_intron MGP_C3HHeJ_T0078965.1 MGP_C3HHeJ_G0030801.1 mouse_genomes_project 6 100894266 100895176 - Bola3 protein_coding processed_transcript MGP_C3HHeJ_T0011557.1 MGP_C3HHeJ_G0009690.1 mouse_genomes_project 6 50816627 50816988 + Gm27383 misc_RNA misc_RNA MGP_C3HHeJ_T0004849.1 MGP_C3HHeJ_G0004157.1 mouse_genomes_project 6 28315284 28316180 - Gm44296 antisense antisense MGP_C3HHeJ_T0076429.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28327754 28510333 - MGP_C3HHeJ_P0076429 Copg2 protein_coding protein_coding MGP_C3HHeJ_T0076430.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28328612 28510388 - MGP_C3HHeJ_P0076430 Copg2 protein_coding protein_coding MGP_C3HHeJ_T0076431.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28433552 28510304 - Copg2 protein_coding processed_transcript MGP_C3HHeJ_T0076432.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28434042 28510358 - Copg2 protein_coding processed_transcript MGP_C3HHeJ_T0076433.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28469915 28510324 - Copg2 protein_coding processed_transcript MGP_C3HHeJ_T0076434.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28470291 28510020 - Copg2 protein_coding processed_transcript MGP_C3HHeJ_T0076435.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28508490 28510031 - Copg2 protein_coding processed_transcript MGP_C3HHeJ_T0076436.1 MGP_C3HHeJ_G0030241.1 mouse_genomes_project 6 28509708 28510342 - Copg2 protein_coding processed_transcript MGP_C3HHeJ_T0008701.1 MGP_C3HHeJ_G0007020.1 mouse_genomes_project 6 151641883 151643090 - Gm17216 lincRNA lincRNA MGP_C3HHeJ_T0079629.1 MGP_C3HHeJ_G0030956.1 mouse_genomes_project 6 126333504 126447736 + MGP_C3HHeJ_P0079629 C1rl protein_coding protein_coding MGP_C3HHeJ_T0078844.1 MGP_C3HHeJ_G0030782.1 mouse_genomes_project 6 98969916 98980837 - Emx1 protein_coding retained_intron MGP_C3HHeJ_T0078845.1 MGP_C3HHeJ_G0030782.1 mouse_genomes_project 6 98970020 98991387 - MGP_C3HHeJ_P0078845 Emx1 protein_coding protein_coding MGP_C3HHeJ_T0076585.1 MGP_C3HHeJ_G0030268.1 mouse_genomes_project 6 33234151 33266374 - MGP_C3HHeJ_P0076585 Mtpn protein_coding protein_coding MGP_C3HHeJ_T0076586.1 MGP_C3HHeJ_G0030268.1 mouse_genomes_project 6 33248273 33266285 - MGP_C3HHeJ_P0076586 Mtpn protein_coding protein_coding MGP_C3HHeJ_T0015352.1 MGP_C3HHeJ_G0013456.1 mouse_genomes_project 6 117814224 117814867 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077402.1 MGP_C3HHeJ_G0030497.1 mouse_genomes_project 6 56408979 56489087 + MGP_C3HHeJ_P0077402 Herc6 protein_coding protein_coding MGP_C3HHeJ_T0077403.1 MGP_C3HHeJ_G0030497.1 mouse_genomes_project 6 56408987 56412871 + MGP_C3HHeJ_P0077403 Herc6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077404.1 MGP_C3HHeJ_G0030497.1 mouse_genomes_project 6 56430796 56451400 + Herc6 protein_coding retained_intron MGP_C3HHeJ_T0077405.1 MGP_C3HHeJ_G0030497.1 mouse_genomes_project 6 56433225 56437530 + Herc6 protein_coding retained_intron MGP_C3HHeJ_T0077406.1 MGP_C3HHeJ_G0030497.1 mouse_genomes_project 6 56434074 56443101 + Herc6 protein_coding retained_intron MGP_C3HHeJ_T0077407.1 MGP_C3HHeJ_G0030497.1 mouse_genomes_project 6 56437467 56444358 + Herc6 protein_coding retained_intron MGP_C3HHeJ_T0076800.1 MGP_C3HHeJ_G0030329.1 mouse_genomes_project 6 39722122 39723409 + MGP_C3HHeJ_P0076800 1700034O15Rik protein_coding protein_coding MGP_C3HHeJ_T0080445.1 MGP_C3HHeJ_G0031156.1 mouse_genomes_project 6 144769412 144819886 + MGP_C3HHeJ_P0080445 Slco1c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080446.1 MGP_C3HHeJ_G0031156.1 mouse_genomes_project 6 144769429 144819904 + MGP_C3HHeJ_P0080446 Slco1c1 protein_coding protein_coding MGP_C3HHeJ_T0080447.1 MGP_C3HHeJ_G0031156.1 mouse_genomes_project 6 144769430 144819902 + MGP_C3HHeJ_P0080447 Slco1c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080448.1 MGP_C3HHeJ_G0031156.1 mouse_genomes_project 6 144769579 144820295 + MGP_C3HHeJ_P0080448 Slco1c1 protein_coding protein_coding MGP_C3HHeJ_T0080449.1 MGP_C3HHeJ_G0031156.1 mouse_genomes_project 6 144794119 144796419 + Slco1c1 protein_coding retained_intron MGP_C3HHeJ_T0077982.1 MGP_C3HHeJ_G0030609.1 mouse_genomes_project 6 69849704 69852507 + MGP_C3HHeJ_P0077982 Tada3 protein_coding protein_coding MGP_C3HHeJ_T0077983.1 MGP_C3HHeJ_G0030609.1 mouse_genomes_project 6 69849721 69854125 + Tada3 protein_coding retained_intron MGP_C3HHeJ_T0077984.1 MGP_C3HHeJ_G0030609.1 mouse_genomes_project 6 69849721 69854029 + Tada3 protein_coding retained_intron MGP_C3HHeJ_T0077985.1 MGP_C3HHeJ_G0030609.1 mouse_genomes_project 6 69849882 69861818 + MGP_C3HHeJ_P0077985 Tada3 protein_coding protein_coding MGP_C3HHeJ_T0077986.1 MGP_C3HHeJ_G0030609.1 mouse_genomes_project 6 69849943 69861831 + MGP_C3HHeJ_P0077986 Tada3 protein_coding protein_coding MGP_C3HHeJ_T0077987.1 MGP_C3HHeJ_G0030609.1 mouse_genomes_project 6 69857348 69861570 + Tada3 protein_coding retained_intron MGP_C3HHeJ_T0102100.1 MGP_C3HHeJ_G0040065.1 mouse_genomes_project 6 93709157 93710100 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0076058.1 MGP_C3HHeJ_G0030170.1 mouse_genomes_project 6 15094746 15153299 - MGP_C3HHeJ_P0076058 Asz1 protein_coding protein_coding MGP_C3HHeJ_T0076059.1 MGP_C3HHeJ_G0030170.1 mouse_genomes_project 6 15094765 15153286 - Asz1 protein_coding retained_intron MGP_C3HHeJ_T0076060.1 MGP_C3HHeJ_G0030170.1 mouse_genomes_project 6 15111025 15112329 - Asz1 protein_coding retained_intron MGP_C3HHeJ_T0076061.1 MGP_C3HHeJ_G0030170.1 mouse_genomes_project 6 15112997 15153287 - MGP_C3HHeJ_P0076061 Asz1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076062.1 MGP_C3HHeJ_G0030170.1 mouse_genomes_project 6 15114284 15153303 - Asz1 protein_coding processed_transcript MGP_C3HHeJ_T0001870.1 MGP_C3HHeJ_G0001792.1 mouse_genomes_project 6 21150 23264 - TEC TEC MGP_C3HHeJ_T0008423.1 MGP_C3HHeJ_G0006816.1 mouse_genomes_project 6 7873501 7881624 - AA545190 lincRNA lincRNA MGP_C3HHeJ_T0008424.1 MGP_C3HHeJ_G0006816.1 mouse_genomes_project 6 7873940 7881599 - AA545190 lincRNA lincRNA MGP_C3HHeJ_T0008425.1 MGP_C3HHeJ_G0006816.1 mouse_genomes_project 6 7873999 7876312 - AA545190 lincRNA lincRNA MGP_C3HHeJ_T0078113.1 MGP_C3HHeJ_G0030631.1 mouse_genomes_project 6 75848376 75890319 - MGP_C3HHeJ_P0078113 Lrrn1 protein_coding protein_coding MGP_C3HHeJ_T0078262.1 MGP_C3HHeJ_G0030661.1 mouse_genomes_project 6 88418121 88418220 - MGP_C3HHeJ_P0078262 Gm10234 protein_coding protein_coding MGP_C3HHeJ_T0079092.1 MGP_C3HHeJ_G0030826.1 mouse_genomes_project 6 101581266 101679131 + Pole4 protein_coding processed_transcript MGP_C3HHeJ_T0079093.1 MGP_C3HHeJ_G0030826.1 mouse_genomes_project 6 101650264 101656493 + MGP_C3HHeJ_P0079093 Pole4 protein_coding protein_coding MGP_C3HHeJ_T0079094.1 MGP_C3HHeJ_G0030826.1 mouse_genomes_project 6 101650323 101676249 + MGP_C3HHeJ_P0079094 Pole4 protein_coding protein_coding MGP_C3HHeJ_T0079095.1 MGP_C3HHeJ_G0030826.1 mouse_genomes_project 6 101650673 101655878 + Pole4 protein_coding processed_transcript MGP_C3HHeJ_T0079096.1 MGP_C3HHeJ_G0030826.1 mouse_genomes_project 6 101650675 101655351 + Pole4 protein_coding processed_transcript MGP_C3HHeJ_T0001945.1 MGP_C3HHeJ_G0001867.1 mouse_genomes_project 6 45962636 45964221 + TEC TEC MGP_C3HHeJ_T0004916.1 MGP_C3HHeJ_G0004209.1 mouse_genomes_project 6 74747953 74832415 + 0610040F04Rik antisense antisense MGP_C3HHeJ_T0004917.1 MGP_C3HHeJ_G0004209.1 mouse_genomes_project 6 74795330 74798990 + 0610040F04Rik antisense antisense MGP_C3HHeJ_T0078578.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96125079 96148719 - MGP_C3HHeJ_P0078578 Hmces protein_coding protein_coding MGP_C3HHeJ_T0078579.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96125079 96148348 - MGP_C3HHeJ_P0078579 Hmces protein_coding protein_coding MGP_C3HHeJ_T0078580.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96125179 96128716 - Hmces protein_coding retained_intron MGP_C3HHeJ_T0078581.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96128283 96144730 - Hmces protein_coding processed_transcript MGP_C3HHeJ_T0078582.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96128660 96148704 - Hmces protein_coding processed_transcript MGP_C3HHeJ_T0078583.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96141102 96148675 - MGP_C3HHeJ_P0078583 Hmces protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078584.1 MGP_C3HHeJ_G0030728.1 mouse_genomes_project 6 96147650 96148696 - Hmces protein_coding processed_transcript MGP_C3HHeJ_T0078531.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95390089 95409397 + MGP_C3HHeJ_P0078531 Kbtbd12 protein_coding protein_coding MGP_C3HHeJ_T0078532.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95400579 95414261 + Kbtbd12 protein_coding retained_intron MGP_C3HHeJ_T0078533.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95400582 95410578 + Kbtbd12 protein_coding retained_intron MGP_C3HHeJ_T0078534.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95400585 95479266 + MGP_C3HHeJ_P0078534 Kbtbd12 protein_coding protein_coding MGP_C3HHeJ_T0078535.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95409491 95413982 + Kbtbd12 protein_coding processed_transcript MGP_C3HHeJ_T0078536.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95409512 95479260 + MGP_C3HHeJ_P0078536 Kbtbd12 protein_coding protein_coding MGP_C3HHeJ_T0078537.1 MGP_C3HHeJ_G0030719.1 mouse_genomes_project 6 95437246 95441370 + Kbtbd12 protein_coding retained_intron MGP_C3HHeJ_T0015073.1 MGP_C3HHeJ_G0013177.1 mouse_genomes_project 6 11028357 11028662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080154.1 MGP_C3HHeJ_G0031078.1 mouse_genomes_project 6 134229609 134230641 - MGP_C3HHeJ_P0080154 Tas2r107 protein_coding protein_coding MGP_C3HHeJ_T0080121.1 MGP_C3HHeJ_G0031064.1 mouse_genomes_project 6 132246519 132269155 - MGP_C3HHeJ_P0080121 Klra4 protein_coding protein_coding MGP_C3HHeJ_T0076821.1 MGP_C3HHeJ_G0030339.1 mouse_genomes_project 6 40269508 40274015 + MGP_C3HHeJ_P0076821 Gstk1 protein_coding protein_coding MGP_C3HHeJ_T0076822.1 MGP_C3HHeJ_G0030339.1 mouse_genomes_project 6 40269552 40274015 + MGP_C3HHeJ_P0076822 Gstk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076823.1 MGP_C3HHeJ_G0030339.1 mouse_genomes_project 6 40269562 40274021 + Gstk1 protein_coding retained_intron MGP_C3HHeJ_T0076824.1 MGP_C3HHeJ_G0030339.1 mouse_genomes_project 6 40269596 40273893 + Gstk1 protein_coding processed_transcript MGP_C3HHeJ_T0102118.1 MGP_C3HHeJ_G0040083.1 mouse_genomes_project 6 130807551 130817716 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102119.1 MGP_C3HHeJ_G0040083.1 mouse_genomes_project 6 130807574 130812925 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004868.1 MGP_C3HHeJ_G0004173.1 mouse_genomes_project 6 38132894 38138829 - Gm26807 antisense antisense MGP_C3HHeJ_T0001970.1 MGP_C3HHeJ_G0001891.1 mouse_genomes_project 6 66864516 66868112 + TEC TEC MGP_C3HHeJ_T0079938.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129165815 129191718 - MGP_C3HHeJ_P0079938 Ccnd2 protein_coding protein_coding MGP_C3HHeJ_T0079939.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129171150 129179807 - Ccnd2 protein_coding processed_transcript MGP_C3HHeJ_T0079940.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129179747 129187340 - Ccnd2 protein_coding processed_transcript MGP_C3HHeJ_T0079941.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129186674 129192851 - MGP_C3HHeJ_P0079941 Ccnd2 protein_coding protein_coding MGP_C3HHeJ_T0079942.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129188153 129191665 - Ccnd2 protein_coding retained_intron MGP_C3HHeJ_T0079943.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129188935 129191691 - MGP_C3HHeJ_P0079943 Ccnd2 protein_coding protein_coding MGP_C3HHeJ_T0079944.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129188952 129191665 - MGP_C3HHeJ_P0079944 Ccnd2 protein_coding protein_coding MGP_C3HHeJ_T0079945.1 MGP_C3HHeJ_G0031015.1 mouse_genomes_project 6 129191438 129191619 - Ccnd2 protein_coding processed_transcript MGP_C3HHeJ_T0078633.1 MGP_C3HHeJ_G0030738.1 mouse_genomes_project 6 96544416 96623572 + MGP_C3HHeJ_P0078633 Arhgap25 protein_coding protein_coding MGP_C3HHeJ_T0078634.1 MGP_C3HHeJ_G0030738.1 mouse_genomes_project 6 96582164 96623572 + Arhgap25 protein_coding retained_intron MGP_C3HHeJ_T0078635.1 MGP_C3HHeJ_G0030738.1 mouse_genomes_project 6 96582383 96622706 + MGP_C3HHeJ_P0078635 Arhgap25 protein_coding protein_coding MGP_C3HHeJ_T0078636.1 MGP_C3HHeJ_G0030738.1 mouse_genomes_project 6 96617826 96621982 + Arhgap25 protein_coding retained_intron MGP_C3HHeJ_T0015178.1 MGP_C3HHeJ_G0013282.1 mouse_genomes_project 6 56974943 56975202 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015271.1 MGP_C3HHeJ_G0013375.1 mouse_genomes_project 6 90702292 90703279 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077150.1 MGP_C3HHeJ_G0030425.1 mouse_genomes_project 6 49053174 49055258 - MGP_C3HHeJ_P0077150 Gm10053 protein_coding protein_coding MGP_C3HHeJ_T0076148.1 MGP_C3HHeJ_G0030189.1 mouse_genomes_project 6 21753457 21828734 - MGP_C3HHeJ_P0076148 Iqub protein_coding protein_coding MGP_C3HHeJ_T0076390.1 MGP_C3HHeJ_G0030234.1 mouse_genomes_project 6 28080702 28091094 + MGP_C3HHeJ_P0076390 Ssmem1 protein_coding protein_coding MGP_C3HHeJ_T0076391.1 MGP_C3HHeJ_G0030234.1 mouse_genomes_project 6 28083139 28091095 + MGP_C3HHeJ_P0076391 Ssmem1 protein_coding protein_coding MGP_C3HHeJ_T0076392.1 MGP_C3HHeJ_G0030234.1 mouse_genomes_project 6 28084551 28090385 + MGP_C3HHeJ_P0076392 Ssmem1 protein_coding protein_coding MGP_C3HHeJ_T0015171.1 MGP_C3HHeJ_G0013275.1 mouse_genomes_project 6 51304413 51304714 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000194.1 MGP_C3HHeJ_G0000148.1 mouse_genomes_project 6 117018864 117019151 + MGP_C3HHeJ_P0000194 IG_V_gene IG_V_gene MGP_C3HHeJ_T0100778.1 MGP_C3HHeJ_G0038972.1 mouse_genomes_project 6 99035301 99035417 - Gm22893 snoRNA snoRNA MGP_C3HHeJ_T0000161.1 MGP_C3HHeJ_G0000123.1 mouse_genomes_project 6 115941710 115942176 + MGP_C3HHeJ_P0000161 Igkv13-85 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015129.1 MGP_C3HHeJ_G0013233.1 mouse_genomes_project 6 39297811 39298374 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002126.1 MGP_C3HHeJ_G0002047.1 mouse_genomes_project 6 140046629 140047437 + TEC TEC MGP_C3HHeJ_T0015369.1 MGP_C3HHeJ_G0013473.1 mouse_genomes_project 6 119903375 119904570 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077379.1 MGP_C3HHeJ_G0030478.1 mouse_genomes_project 6 55642980 55647372 + Vmn1r4 protein_coding retained_intron MGP_C3HHeJ_T0077380.1 MGP_C3HHeJ_G0030478.1 mouse_genomes_project 6 55642987 55679376 + MGP_C3HHeJ_P0077380 Vmn1r4 protein_coding protein_coding MGP_C3HHeJ_T0077381.1 MGP_C3HHeJ_G0030478.1 mouse_genomes_project 6 55677741 55678775 + MGP_C3HHeJ_P0077381 Vmn1r4 protein_coding protein_coding MGP_C3HHeJ_T0000278.1 MGP_C3HHeJ_G0000228.1 mouse_genomes_project 6 115887573 115888039 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0002045.1 MGP_C3HHeJ_G0001966.1 mouse_genomes_project 6 97444697 97447060 + TEC TEC MGP_C3HHeJ_T0078170.1 MGP_C3HHeJ_G0030644.1 mouse_genomes_project 6 83913284 83928404 + MGP_C3HHeJ_P0078170 Prok2 protein_coding protein_coding MGP_C3HHeJ_T0078171.1 MGP_C3HHeJ_G0030644.1 mouse_genomes_project 6 83913284 83917567 + MGP_C3HHeJ_P0078171 Prok2 protein_coding protein_coding MGP_C3HHeJ_T0078172.1 MGP_C3HHeJ_G0030644.1 mouse_genomes_project 6 83913293 83927683 + MGP_C3HHeJ_P0078172 Prok2 protein_coding protein_coding MGP_C3HHeJ_T0078173.1 MGP_C3HHeJ_G0030644.1 mouse_genomes_project 6 83913323 83928353 + MGP_C3HHeJ_P0078173 Prok2 protein_coding protein_coding MGP_C3HHeJ_T0015119.1 MGP_C3HHeJ_G0013223.1 mouse_genomes_project 6 35680272 35680997 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008692.1 MGP_C3HHeJ_G0007014.1 mouse_genomes_project 6 149411029 149413248 - Gm44269 lincRNA lincRNA MGP_C3HHeJ_T0015092.1 MGP_C3HHeJ_G0013196.1 mouse_genomes_project 6 19878165 19878941 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077153.1 MGP_C3HHeJ_G0030427.1 mouse_genomes_project 6 49145700 49149468 - MGP_C3HHeJ_P0077153 Npvf protein_coding protein_coding MGP_C3HHeJ_T0002523.1 MGP_C3HHeJ_G0002435.1 mouse_genomes_project 6 39565058 39565112 + Trbj1-3 TR_J_gene processed_transcript MGP_C3HHeJ_T0002524.1 MGP_C3HHeJ_G0002435.1 mouse_genomes_project 6 39565058 39565108 + MGP_C3HHeJ_P0002524 Trbj1-3 TR_J_gene TR_J_gene MGP_C3HHeJ_T0078387.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92799279 92910108 + MGP_C3HHeJ_P0078387 Nup210 protein_coding protein_coding MGP_C3HHeJ_T0078388.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92799289 92910106 + MGP_C3HHeJ_P0078388 Nup210 protein_coding protein_coding MGP_C3HHeJ_T0078389.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92799312 92801752 + Nup210 protein_coding retained_intron MGP_C3HHeJ_T0078390.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92822595 92835418 + Nup210 protein_coding retained_intron MGP_C3HHeJ_T0078391.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92855852 92861957 + Nup210 protein_coding processed_transcript MGP_C3HHeJ_T0078392.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92867290 92910106 + MGP_C3HHeJ_P0078392 Nup210 protein_coding protein_coding MGP_C3HHeJ_T0078393.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92869054 92870093 + Nup210 protein_coding processed_transcript MGP_C3HHeJ_T0078394.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92893094 92896773 + Nup210 protein_coding retained_intron MGP_C3HHeJ_T0078395.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92897843 92904443 + Nup210 protein_coding retained_intron MGP_C3HHeJ_T0078396.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92899300 92904264 + Nup210 protein_coding processed_transcript MGP_C3HHeJ_T0078397.1 MGP_C3HHeJ_G0030686.1 mouse_genomes_project 6 92905758 92909859 + Nup210 protein_coding processed_transcript MGP_C3HHeJ_T0080394.1 MGP_C3HHeJ_G0031147.1 mouse_genomes_project 6 142673006 142681971 - MGP_C3HHeJ_P0080394 Rergl protein_coding protein_coding MGP_C3HHeJ_T0015149.1 MGP_C3HHeJ_G0013253.1 mouse_genomes_project 6 47056873 47057331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001951.1 MGP_C3HHeJ_G0001873.1 mouse_genomes_project 6 51177349 51181094 - TEC TEC MGP_C3HHeJ_T0002086.1 MGP_C3HHeJ_G0002007.1 mouse_genomes_project 6 112363538 112366151 - TEC TEC MGP_C3HHeJ_T0075841.1 MGP_C3HHeJ_G0030129.1 mouse_genomes_project 6 2002480 2040706 - MGP_C3HHeJ_P0075841 Pon3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075842.1 MGP_C3HHeJ_G0030129.1 mouse_genomes_project 6 2002480 2040759 - MGP_C3HHeJ_P0075842 Pon3 protein_coding protein_coding MGP_C3HHeJ_T0075843.1 MGP_C3HHeJ_G0030129.1 mouse_genomes_project 6 2011023 2040708 - MGP_C3HHeJ_P0075843 Pon3 protein_coding protein_coding MGP_C3HHeJ_T0075844.1 MGP_C3HHeJ_G0030129.1 mouse_genomes_project 6 2016085 2040687 - Pon3 protein_coding retained_intron MGP_C3HHeJ_T0075845.1 MGP_C3HHeJ_G0030129.1 mouse_genomes_project 6 2016528 2039339 - Pon3 protein_coding retained_intron MGP_C3HHeJ_T0075846.1 MGP_C3HHeJ_G0030129.1 mouse_genomes_project 6 2039052 2040040 - Pon3 protein_coding processed_transcript MGP_C3HHeJ_T0002124.1 MGP_C3HHeJ_G0002045.1 mouse_genomes_project 6 139818544 139820614 + TEC TEC MGP_C3HHeJ_T0080653.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150051787 150059810 + Med21 protein_coding processed_transcript MGP_C3HHeJ_T0080654.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150051787 150059810 + MGP_C3HHeJ_P0080654 Med21 protein_coding protein_coding MGP_C3HHeJ_T0080655.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150051819 150053339 + Med21 protein_coding retained_intron MGP_C3HHeJ_T0080656.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150051820 150058667 + MGP_C3HHeJ_P0080656 Med21 protein_coding protein_coding MGP_C3HHeJ_T0080657.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150051821 150059810 + Med21 protein_coding processed_transcript MGP_C3HHeJ_T0080658.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150051831 150059940 + MGP_C3HHeJ_P0080658 Med21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080659.1 MGP_C3HHeJ_G0031193.1 mouse_genomes_project 6 150056505 150059810 + Med21 protein_coding retained_intron MGP_C3HHeJ_T0077422.1 MGP_C3HHeJ_G0030504.1 mouse_genomes_project 6 56748015 56749012 - MGP_C3HHeJ_P0077422 Vmn1r23 protein_coding protein_coding MGP_C3HHeJ_T0077223.1 MGP_C3HHeJ_G0030446.1 mouse_genomes_project 6 51121802 51217447 - MGP_C3HHeJ_P0077223 Hibadh protein_coding protein_coding MGP_C3HHeJ_T0077224.1 MGP_C3HHeJ_G0030446.1 mouse_genomes_project 6 51122270 51207316 - Hibadh protein_coding retained_intron MGP_C3HHeJ_T0077225.1 MGP_C3HHeJ_G0030446.1 mouse_genomes_project 6 51124426 51132300 - Hibadh protein_coding retained_intron MGP_C3HHeJ_T0077226.1 MGP_C3HHeJ_G0030446.1 mouse_genomes_project 6 51129798 51131902 - Hibadh protein_coding retained_intron MGP_C3HHeJ_T0077227.1 MGP_C3HHeJ_G0030446.1 mouse_genomes_project 6 51211289 51217373 - Hibadh protein_coding retained_intron MGP_C3HHeJ_T0011531.1 MGP_C3HHeJ_G0009664.1 mouse_genomes_project 6 14712277 14712450 + Gm27365 misc_RNA misc_RNA MGP_C3HHeJ_T0079699.1 MGP_C3HHeJ_G0030969.1 mouse_genomes_project 6 126705133 126707092 + MGP_C3HHeJ_P0079699 Spsb2 protein_coding protein_coding MGP_C3HHeJ_T0079700.1 MGP_C3HHeJ_G0030969.1 mouse_genomes_project 6 126705357 126706809 + MGP_C3HHeJ_P0079700 Spsb2 protein_coding protein_coding MGP_C3HHeJ_T0079701.1 MGP_C3HHeJ_G0030969.1 mouse_genomes_project 6 126705378 126707092 + MGP_C3HHeJ_P0079701 Spsb2 protein_coding protein_coding MGP_C3HHeJ_T0079702.1 MGP_C3HHeJ_G0030969.1 mouse_genomes_project 6 126705391 126706411 + MGP_C3HHeJ_P0079702 Spsb2 protein_coding protein_coding MGP_C3HHeJ_T0079703.1 MGP_C3HHeJ_G0030969.1 mouse_genomes_project 6 126705770 126707092 + MGP_C3HHeJ_P0079703 Spsb2 protein_coding protein_coding MGP_C3HHeJ_T0100758.1 MGP_C3HHeJ_G0038952.1 mouse_genomes_project 6 55271290 55271422 - Gm24709 snoRNA snoRNA MGP_C3HHeJ_T0080327.1 MGP_C3HHeJ_G0031138.1 mouse_genomes_project 6 140137215 140268496 - MGP_C3HHeJ_P0080327 Rerg protein_coding protein_coding MGP_C3HHeJ_T0080328.1 MGP_C3HHeJ_G0031138.1 mouse_genomes_project 6 140137221 140267718 - MGP_C3HHeJ_P0080328 Rerg protein_coding protein_coding MGP_C3HHeJ_T0080329.1 MGP_C3HHeJ_G0031138.1 mouse_genomes_project 6 140138493 140267671 - MGP_C3HHeJ_P0080329 Rerg protein_coding protein_coding MGP_C3HHeJ_T0080330.1 MGP_C3HHeJ_G0031138.1 mouse_genomes_project 6 140138783 140227619 - MGP_C3HHeJ_P0080330 Rerg protein_coding protein_coding MGP_C3HHeJ_T0080331.1 MGP_C3HHeJ_G0031138.1 mouse_genomes_project 6 140208354 140267694 - MGP_C3HHeJ_P0080331 Rerg protein_coding protein_coding MGP_C3HHeJ_T0102092.1 MGP_C3HHeJ_G0040057.1 mouse_genomes_project 6 56953638 56954532 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0076380.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28047626 28080558 - MGP_C3HHeJ_P0076380 Tmem209 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076381.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28049370 28080569 - MGP_C3HHeJ_P0076381 Tmem209 protein_coding protein_coding MGP_C3HHeJ_T0076382.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28049595 28080570 - MGP_C3HHeJ_P0076382 Tmem209 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076383.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28049801 28080637 - MGP_C3HHeJ_P0076383 Tmem209 protein_coding protein_coding MGP_C3HHeJ_T0076384.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28050988 28080572 - MGP_C3HHeJ_P0076384 Tmem209 protein_coding protein_coding MGP_C3HHeJ_T0076385.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28051374 28080569 - MGP_C3HHeJ_P0076385 Tmem209 protein_coding protein_coding MGP_C3HHeJ_T0076386.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28058926 28060750 - Tmem209 protein_coding retained_intron MGP_C3HHeJ_T0076387.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28070573 28080603 - MGP_C3HHeJ_P0076387 Tmem209 protein_coding protein_coding MGP_C3HHeJ_T0076388.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28075602 28080576 - Tmem209 protein_coding retained_intron MGP_C3HHeJ_T0076389.1 MGP_C3HHeJ_G0030233.1 mouse_genomes_project 6 28076605 28080578 - MGP_C3HHeJ_P0076389 Tmem209 protein_coding protein_coding MGP_C3HHeJ_T0099540.1 MGP_C3HHeJ_G0037734.1 mouse_genomes_project 6 118036512 118036646 - Gm25260 snRNA snRNA MGP_C3HHeJ_T0079879.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127511530 127558052 + MGP_C3HHeJ_P0079879 Vwf protein_coding protein_coding MGP_C3HHeJ_T0079880.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127517715 127668289 + MGP_C3HHeJ_P0079880 Vwf protein_coding protein_coding MGP_C3HHeJ_T0079881.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127517730 127570636 + Vwf protein_coding retained_intron MGP_C3HHeJ_T0079882.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127517730 127558349 + MGP_C3HHeJ_P0079882 Vwf protein_coding protein_coding MGP_C3HHeJ_T0079883.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127532636 127544459 + Vwf protein_coding processed_transcript MGP_C3HHeJ_T0079884.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127569409 127612709 + Vwf protein_coding processed_transcript MGP_C3HHeJ_T0079885.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127601714 127604595 + Vwf protein_coding retained_intron MGP_C3HHeJ_T0079886.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127616123 127631750 + Vwf protein_coding retained_intron MGP_C3HHeJ_T0079887.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127619053 127668282 + MGP_C3HHeJ_P0079887 Vwf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079888.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127624713 127626410 + Vwf protein_coding retained_intron MGP_C3HHeJ_T0079889.1 MGP_C3HHeJ_G0031001.1 mouse_genomes_project 6 127667346 127668245 + Vwf protein_coding processed_transcript MGP_C3HHeJ_T0076977.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780229 46804716 + MGP_C3HHeJ_P0076977 Krba1 protein_coding protein_coding MGP_C3HHeJ_T0076978.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780257 46802070 + MGP_C3HHeJ_P0076978 Krba1 protein_coding protein_coding MGP_C3HHeJ_T0076979.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780273 46785328 + Krba1 protein_coding retained_intron MGP_C3HHeJ_T0076980.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780275 46802065 + MGP_C3HHeJ_P0076980 Krba1 protein_coding protein_coding MGP_C3HHeJ_T0076981.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780301 46804716 + MGP_C3HHeJ_P0076981 Krba1 protein_coding protein_coding MGP_C3HHeJ_T0076982.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780341 46788123 + Krba1 protein_coding processed_transcript MGP_C3HHeJ_T0076983.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46780509 46802632 + MGP_C3HHeJ_P0076983 Krba1 protein_coding protein_coding MGP_C3HHeJ_T0076984.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46788698 46793197 + Krba1 protein_coding processed_transcript MGP_C3HHeJ_T0076985.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46793858 46804716 + Krba1 protein_coding retained_intron MGP_C3HHeJ_T0076986.1 MGP_C3HHeJ_G0030386.1 mouse_genomes_project 6 46797995 46804952 + Krba1 protein_coding retained_intron MGP_C3HHeJ_T0076765.1 MGP_C3HHeJ_G0030308.1 mouse_genomes_project 6 38489430 38490372 - MGP_C3HHeJ_P0076765 Olfr461 protein_coding protein_coding MGP_C3HHeJ_T0004871.1 MGP_C3HHeJ_G0004176.1 mouse_genomes_project 6 40400579 40410458 + 2010310C07Rik antisense antisense MGP_C3HHeJ_T0004872.1 MGP_C3HHeJ_G0004176.1 mouse_genomes_project 6 40407858 40411118 + 2010310C07Rik antisense antisense MGP_C3HHeJ_T0076897.1 MGP_C3HHeJ_G0030366.1 mouse_genomes_project 6 41211908 41212908 + MGP_C3HHeJ_P0076897 protein_coding protein_coding MGP_C3HHeJ_T0079723.1 MGP_C3HHeJ_G0030973.1 mouse_genomes_project 6 126732842 126738870 - MGP_C3HHeJ_P0079723 Gnb3 protein_coding protein_coding MGP_C3HHeJ_T0079724.1 MGP_C3HHeJ_G0030973.1 mouse_genomes_project 6 126732849 126738552 - Gnb3 protein_coding retained_intron MGP_C3HHeJ_T0079725.1 MGP_C3HHeJ_G0030973.1 mouse_genomes_project 6 126733281 126734892 - Gnb3 protein_coding processed_transcript MGP_C3HHeJ_T0079726.1 MGP_C3HHeJ_G0030973.1 mouse_genomes_project 6 126737693 126738678 - Gnb3 protein_coding retained_intron MGP_C3HHeJ_T0015193.1 MGP_C3HHeJ_G0013297.1 mouse_genomes_project 6 61689125 61690257 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008495.1 MGP_C3HHeJ_G0006861.1 mouse_genomes_project 6 45864876 45869927 + Gm26625 lincRNA lincRNA MGP_C3HHeJ_T0078994.1 MGP_C3HHeJ_G0030806.1 mouse_genomes_project 6 101096555 101103075 - MGP_C3HHeJ_P0078994 1700003E16Rik protein_coding protein_coding MGP_C3HHeJ_T0078995.1 MGP_C3HHeJ_G0030806.1 mouse_genomes_project 6 101096609 101102978 - MGP_C3HHeJ_P0078995 1700003E16Rik protein_coding protein_coding MGP_C3HHeJ_T0078793.1 MGP_C3HHeJ_G0030769.1 mouse_genomes_project 6 98326490 98330244 + MGP_C3HHeJ_P0078793 Nat8f5 protein_coding protein_coding MGP_C3HHeJ_T0076675.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36740820 36819399 + MGP_C3HHeJ_P0076675 Tbxas1 protein_coding protein_coding MGP_C3HHeJ_T0076676.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36785621 36954839 + MGP_C3HHeJ_P0076676 Tbxas1 protein_coding protein_coding MGP_C3HHeJ_T0076677.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36785646 36897195 + Tbxas1 protein_coding retained_intron MGP_C3HHeJ_T0076678.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36785665 36954839 + Tbxas1 protein_coding retained_intron MGP_C3HHeJ_T0076679.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36807826 36867830 + MGP_C3HHeJ_P0076679 Tbxas1 protein_coding protein_coding MGP_C3HHeJ_T0076680.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36838357 36850016 + Tbxas1 protein_coding processed_transcript MGP_C3HHeJ_T0076681.1 MGP_C3HHeJ_G0030288.1 mouse_genomes_project 6 36849799 36943466 + Tbxas1 protein_coding retained_intron MGP_C3HHeJ_T0015235.1 MGP_C3HHeJ_G0013339.1 mouse_genomes_project 6 75923061 75923710 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015365.1 MGP_C3HHeJ_G0013469.1 mouse_genomes_project 6 119275111 119275676 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077714.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66720671 66793144 - MGP_C3HHeJ_P0077714 protein_coding protein_coding MGP_C3HHeJ_T0077715.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66720674 66793303 - MGP_C3HHeJ_P0077715 protein_coding protein_coding MGP_C3HHeJ_T0077716.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66720674 66793294 - MGP_C3HHeJ_P0077716 protein_coding protein_coding MGP_C3HHeJ_T0077717.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66723909 66725038 - protein_coding processed_transcript MGP_C3HHeJ_T0077718.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66723990 66744040 - MGP_C3HHeJ_P0077718 protein_coding protein_coding MGP_C3HHeJ_T0077719.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66724080 66744014 - protein_coding retained_intron MGP_C3HHeJ_T0077720.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66724432 66727865 - protein_coding processed_transcript MGP_C3HHeJ_T0077721.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66724461 66793283 - MGP_C3HHeJ_P0077721 protein_coding protein_coding MGP_C3HHeJ_T0077722.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66724473 66793274 - MGP_C3HHeJ_P0077722 protein_coding protein_coding MGP_C3HHeJ_T0077723.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66727428 66779923 - MGP_C3HHeJ_P0077723 protein_coding protein_coding MGP_C3HHeJ_T0077724.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66728996 66738314 - protein_coding processed_transcript MGP_C3HHeJ_T0077725.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66729422 66754202 - protein_coding retained_intron MGP_C3HHeJ_T0077726.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66754031 66779882 - MGP_C3HHeJ_P0077726 protein_coding protein_coding MGP_C3HHeJ_T0077727.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66754092 66793263 - MGP_C3HHeJ_P0077727 protein_coding protein_coding MGP_C3HHeJ_T0077728.1 MGP_C3HHeJ_G0030562.1 mouse_genomes_project 6 66777350 66780423 - protein_coding retained_intron MGP_C3HHeJ_T0078011.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69924371 69947562 - Cpne9 protein_coding retained_intron MGP_C3HHeJ_T0078012.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69924427 69941381 - Cpne9 protein_coding retained_intron MGP_C3HHeJ_T0078013.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69924429 69947562 - MGP_C3HHeJ_P0078013 Cpne9 protein_coding protein_coding MGP_C3HHeJ_T0078014.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69925172 69947559 - MGP_C3HHeJ_P0078014 Cpne9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078015.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69925375 69947395 - MGP_C3HHeJ_P0078015 Cpne9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0078016.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69928304 69935595 - Cpne9 protein_coding processed_transcript MGP_C3HHeJ_T0078017.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69944600 69947533 - Cpne9 protein_coding retained_intron MGP_C3HHeJ_T0078018.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69945444 69947504 - Cpne9 protein_coding processed_transcript MGP_C3HHeJ_T0078019.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69945899 69947505 - Cpne9 protein_coding processed_transcript MGP_C3HHeJ_T0078020.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69946361 69947530 - Cpne9 protein_coding retained_intron MGP_C3HHeJ_T0078021.1 MGP_C3HHeJ_G0030613.1 mouse_genomes_project 6 69946439 69947534 - Cpne9 protein_coding retained_intron MGP_C3HHeJ_T0075837.1 MGP_C3HHeJ_G0030128.1 mouse_genomes_project 6 1944443 1970201 - MGP_C3HHeJ_P0075837 Pon1 protein_coding protein_coding MGP_C3HHeJ_T0075838.1 MGP_C3HHeJ_G0030128.1 mouse_genomes_project 6 1944848 1970039 - MGP_C3HHeJ_P0075838 Pon1 protein_coding protein_coding MGP_C3HHeJ_T0075839.1 MGP_C3HHeJ_G0030128.1 mouse_genomes_project 6 1948385 1970039 - MGP_C3HHeJ_P0075839 Pon1 protein_coding protein_coding MGP_C3HHeJ_T0075840.1 MGP_C3HHeJ_G0030128.1 mouse_genomes_project 6 1961808 1970018 - Pon1 protein_coding retained_intron MGP_C3HHeJ_T0078852.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138399 99386695 + Exoc6b protein_coding retained_intron MGP_C3HHeJ_T0078853.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138399 99597143 + MGP_C3HHeJ_P0078853 Exoc6b protein_coding protein_coding MGP_C3HHeJ_T0078854.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138410 99272097 + Exoc6b protein_coding processed_transcript MGP_C3HHeJ_T0078855.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138410 99367219 + MGP_C3HHeJ_P0078855 Exoc6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078856.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138437 99209679 + Exoc6b protein_coding retained_intron MGP_C3HHeJ_T0078857.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138444 99228126 + Exoc6b protein_coding retained_intron MGP_C3HHeJ_T0078858.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99138455 99385823 + Exoc6b protein_coding retained_intron MGP_C3HHeJ_T0078859.1 MGP_C3HHeJ_G0030785.1 mouse_genomes_project 6 99325546 99329543 + Exoc6b protein_coding retained_intron MGP_C3HHeJ_T0077874.1 MGP_C3HHeJ_G0030588.1 mouse_genomes_project 6 68877560 68912156 - MGP_C3HHeJ_P0077874 Slc6a1 protein_coding protein_coding MGP_C3HHeJ_T0077875.1 MGP_C3HHeJ_G0030588.1 mouse_genomes_project 6 68879488 68881810 - Slc6a1 protein_coding retained_intron MGP_C3HHeJ_T0077876.1 MGP_C3HHeJ_G0030588.1 mouse_genomes_project 6 68882566 68912118 - Slc6a1 protein_coding retained_intron MGP_C3HHeJ_T0077877.1 MGP_C3HHeJ_G0030588.1 mouse_genomes_project 6 68887980 68912118 - Slc6a1 protein_coding retained_intron MGP_C3HHeJ_T0077878.1 MGP_C3HHeJ_G0030588.1 mouse_genomes_project 6 68893156 68893864 - Slc6a1 protein_coding retained_intron MGP_C3HHeJ_T0077879.1 MGP_C3HHeJ_G0030588.1 mouse_genomes_project 6 68893156 68895085 - Slc6a1 protein_coding processed_transcript MGP_C3HHeJ_T0079256.1 MGP_C3HHeJ_G0030863.1 mouse_genomes_project 6 112226860 112259687 + MGP_C3HHeJ_P0079256 Atoh8 protein_coding protein_coding MGP_C3HHeJ_T0079257.1 MGP_C3HHeJ_G0030863.1 mouse_genomes_project 6 112227207 112240068 + Atoh8 protein_coding processed_transcript MGP_C3HHeJ_T0079258.1 MGP_C3HHeJ_G0030863.1 mouse_genomes_project 6 112227900 112259687 + MGP_C3HHeJ_P0079258 Atoh8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015363.1 MGP_C3HHeJ_G0013467.1 mouse_genomes_project 6 119150493 119151187 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008598.1 MGP_C3HHeJ_G0006942.1 mouse_genomes_project 6 96382156 96397075 + 1810020O05Rik lincRNA lincRNA MGP_C3HHeJ_T0078468.1 MGP_C3HHeJ_G0030713.1 mouse_genomes_project 6 94895298 94909526 - protein_coding lincRNA MGP_C3HHeJ_T0078469.1 MGP_C3HHeJ_G0030713.1 mouse_genomes_project 6 94895299 94904124 - MGP_C3HHeJ_P0078469 protein_coding protein_coding MGP_C3HHeJ_T0078470.1 MGP_C3HHeJ_G0030713.1 mouse_genomes_project 6 94897117 94904570 - protein_coding lincRNA MGP_C3HHeJ_T0078471.1 MGP_C3HHeJ_G0030713.1 mouse_genomes_project 6 94897437 94909526 - protein_coding lincRNA MGP_C3HHeJ_T0001885.1 MGP_C3HHeJ_G0001807.1 mouse_genomes_project 6 9848199 9849142 + TEC TEC MGP_C3HHeJ_T0018030.1 MGP_C3HHeJ_G0015390.1 mouse_genomes_project 6 50715381 50719174 + Hoxaas2 processed_transcript antisense MGP_C3HHeJ_T0018031.1 MGP_C3HHeJ_G0015390.1 mouse_genomes_project 6 50716241 50719287 + Hoxaas2 processed_transcript retained_intron MGP_C3HHeJ_T0018032.1 MGP_C3HHeJ_G0015390.1 mouse_genomes_project 6 50718233 50719287 + Hoxaas2 processed_transcript processed_transcript MGP_C3HHeJ_T0099505.1 MGP_C3HHeJ_G0037699.1 mouse_genomes_project 6 23834251 23834391 - Gm24691 snRNA snRNA MGP_C3HHeJ_T0077442.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57750777 57763043 + MGP_C3HHeJ_P0077442 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077443.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57750815 57763029 + MGP_C3HHeJ_P0077443 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077444.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57750836 57774108 + MGP_C3HHeJ_P0077444 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077445.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57751060 57774112 + MGP_C3HHeJ_P0077445 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077446.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57751173 57824448 + MGP_C3HHeJ_P0077446 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077447.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57753012 57841296 + MGP_C3HHeJ_P0077447 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077448.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57782829 57794138 + Herc3 protein_coding retained_intron MGP_C3HHeJ_T0077449.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57794735 57795435 + Herc3 protein_coding processed_transcript MGP_C3HHeJ_T0077450.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57810483 57822918 + MGP_C3HHeJ_P0077450 Herc3 protein_coding protein_coding MGP_C3HHeJ_T0077451.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57822114 57824876 + Herc3 protein_coding retained_intron MGP_C3HHeJ_T0077454.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57827628 57837721 + Herc3 protein_coding processed_transcript MGP_C3HHeJ_T0077455.1 MGP_C3HHeJ_G0030511.1 mouse_genomes_project 6 57830079 57841298 + MGP_C3HHeJ_P0077455 Herc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080186.1 MGP_C3HHeJ_G0031106.1 mouse_genomes_project 6 136945762 137186522 + MGP_C3HHeJ_P0080186 Etv6 protein_coding protein_coding MGP_C3HHeJ_T0080187.1 MGP_C3HHeJ_G0031106.1 mouse_genomes_project 6 136946030 137164667 + MGP_C3HHeJ_P0080187 Etv6 protein_coding protein_coding MGP_C3HHeJ_T0080188.1 MGP_C3HHeJ_G0031106.1 mouse_genomes_project 6 137050666 137186529 + MGP_C3HHeJ_P0080188 Etv6 protein_coding protein_coding MGP_C3HHeJ_T0080189.1 MGP_C3HHeJ_G0031106.1 mouse_genomes_project 6 137149987 137178350 + Etv6 protein_coding retained_intron MGP_C3HHeJ_T0080190.1 MGP_C3HHeJ_G0031106.1 mouse_genomes_project 6 137163947 137164940 + Etv6 protein_coding processed_transcript MGP_C3HHeJ_T0010721.1 MGP_C3HHeJ_G0008854.1 mouse_genomes_project 6 126616235 126616307 - Mir141 miRNA miRNA MGP_C3HHeJ_T0015249.1 MGP_C3HHeJ_G0013353.1 mouse_genomes_project 6 82629607 82631259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077311.1 MGP_C3HHeJ_G0030462.1 mouse_genomes_project 6 53689498 53732479 + MGP_C3HHeJ_P0077311 Gars protein_coding protein_coding MGP_C3HHeJ_T0077312.1 MGP_C3HHeJ_G0030462.1 mouse_genomes_project 6 53699545 53703168 + Gars protein_coding retained_intron MGP_C3HHeJ_T0077313.1 MGP_C3HHeJ_G0030462.1 mouse_genomes_project 6 53702296 53713075 + Gars protein_coding retained_intron MGP_C3HHeJ_T0015323.1 MGP_C3HHeJ_G0013427.1 mouse_genomes_project 6 112640864 112641658 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005013.1 MGP_C3HHeJ_G0004271.1 mouse_genomes_project 6 128740763 128764432 + Gm26673 antisense antisense MGP_C3HHeJ_T0078701.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97645377 97674989 - MGP_C3HHeJ_P0078701 C87436 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078702.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97648494 97680417 - MGP_C3HHeJ_P0078702 C87436 protein_coding protein_coding MGP_C3HHeJ_T0078703.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97648494 97680099 - MGP_C3HHeJ_P0078703 C87436 protein_coding protein_coding MGP_C3HHeJ_T0078704.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97648494 97680064 - MGP_C3HHeJ_P0078704 C87436 protein_coding protein_coding MGP_C3HHeJ_T0078705.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97648494 97680099 - MGP_C3HHeJ_P0078705 C87436 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078706.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97648935 97654837 - C87436 protein_coding processed_transcript MGP_C3HHeJ_T0078707.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97672998 97680402 - MGP_C3HHeJ_P0078707 C87436 protein_coding protein_coding MGP_C3HHeJ_T0078709.1 MGP_C3HHeJ_G0030754.1 mouse_genomes_project 6 97679303 97680083 - C87436 protein_coding processed_transcript MGP_C3HHeJ_T0077489.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62172806 62281408 - MGP_C3HHeJ_P0077489 Cecr2 protein_coding protein_coding MGP_C3HHeJ_T0077490.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62177588 62281247 - MGP_C3HHeJ_P0077490 Cecr2 protein_coding protein_coding MGP_C3HHeJ_T0077491.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62182774 62186335 - MGP_C3HHeJ_P0077491 Cecr2 protein_coding protein_coding MGP_C3HHeJ_T0077492.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62187794 62212686 - Cecr2 protein_coding processed_transcript MGP_C3HHeJ_T0077493.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62188919 62212619 - MGP_C3HHeJ_P0077493 Cecr2 protein_coding protein_coding MGP_C3HHeJ_T0077494.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62206338 62211489 - Cecr2 protein_coding retained_intron MGP_C3HHeJ_T0077495.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62223225 62281460 - Cecr2 protein_coding retained_intron MGP_C3HHeJ_T0077496.1 MGP_C3HHeJ_G0030522.1 mouse_genomes_project 6 62223397 62281294 - Cecr2 protein_coding processed_transcript MGP_C3HHeJ_T0080107.1 MGP_C3HHeJ_G0031058.1 mouse_genomes_project 6 131920812 131933843 - MGP_C3HHeJ_P0080107 protein_coding protein_coding MGP_C3HHeJ_T0076153.1 MGP_C3HHeJ_G0030191.1 mouse_genomes_project 6 21841808 21887752 + MGP_C3HHeJ_P0076153 Asb15 protein_coding protein_coding MGP_C3HHeJ_T0076154.1 MGP_C3HHeJ_G0030191.1 mouse_genomes_project 6 21872166 21889932 + MGP_C3HHeJ_P0076154 Asb15 protein_coding protein_coding MGP_C3HHeJ_T0078325.1 MGP_C3HHeJ_G0030675.1 mouse_genomes_project 6 91925010 91973410 - MGP_C3HHeJ_P0078325 4930590J08Rik protein_coding protein_coding MGP_C3HHeJ_T0078326.1 MGP_C3HHeJ_G0030675.1 mouse_genomes_project 6 91925095 91960958 - MGP_C3HHeJ_P0078326 4930590J08Rik protein_coding protein_coding MGP_C3HHeJ_T0078327.1 MGP_C3HHeJ_G0030675.1 mouse_genomes_project 6 91925705 91931472 - MGP_C3HHeJ_P0078327 4930590J08Rik protein_coding protein_coding MGP_C3HHeJ_T0078328.1 MGP_C3HHeJ_G0030675.1 mouse_genomes_project 6 91972930 91974834 - 4930590J08Rik protein_coding retained_intron MGP_C3HHeJ_T0079107.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102325872 102362450 - MGP_C3HHeJ_P0079107 Gcfc2 protein_coding protein_coding MGP_C3HHeJ_T0079108.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102326531 102362446 - MGP_C3HHeJ_P0079108 Gcfc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079109.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102327725 102339616 - MGP_C3HHeJ_P0079109 Gcfc2 protein_coding protein_coding MGP_C3HHeJ_T0079110.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102328834 102336439 - Gcfc2 protein_coding retained_intron MGP_C3HHeJ_T0079111.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102341899 102362439 - Gcfc2 protein_coding retained_intron MGP_C3HHeJ_T0079112.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102342394 102344765 - Gcfc2 protein_coding retained_intron MGP_C3HHeJ_T0079113.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102351822 102353250 - Gcfc2 protein_coding retained_intron MGP_C3HHeJ_T0079114.1 MGP_C3HHeJ_G0030830.1 mouse_genomes_project 6 102354951 102355404 - Gcfc2 protein_coding retained_intron MGP_C3HHeJ_T0076761.1 MGP_C3HHeJ_G0030305.1 mouse_genomes_project 6 38442638 38443711 + MGP_C3HHeJ_P0076761 Tas2r137 protein_coding protein_coding MGP_C3HHeJ_T0101440.1 MGP_C3HHeJ_G0039458.1 mouse_genomes_project 6 98341775 98371291 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101441.1 MGP_C3HHeJ_G0039458.1 mouse_genomes_project 6 98341775 98350368 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0008436.1 MGP_C3HHeJ_G0006824.1 mouse_genomes_project 6 14351467 14352075 + Gm29591 lincRNA lincRNA MGP_C3HHeJ_T0002672.1 MGP_C3HHeJ_G0002554.1 mouse_genomes_project 6 39197175 39197466 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0015157.1 MGP_C3HHeJ_G0013261.1 mouse_genomes_project 6 47493536 47494069 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075790.1 MGP_C3HHeJ_G0030122.1 mouse_genomes_project 6 813595 823675 - MGP_C3HHeJ_P0075790 Bet1 protein_coding protein_coding MGP_C3HHeJ_T0075791.1 MGP_C3HHeJ_G0030122.1 mouse_genomes_project 6 814415 823622 - Bet1 protein_coding processed_transcript MGP_C3HHeJ_T0075792.1 MGP_C3HHeJ_G0030122.1 mouse_genomes_project 6 814569 816799 - Bet1 protein_coding retained_intron MGP_C3HHeJ_T0075793.1 MGP_C3HHeJ_G0030122.1 mouse_genomes_project 6 817025 823675 - Bet1 protein_coding retained_intron MGP_C3HHeJ_T0075794.1 MGP_C3HHeJ_G0030122.1 mouse_genomes_project 6 818202 823633 - Bet1 protein_coding processed_transcript MGP_C3HHeJ_T0075795.1 MGP_C3HHeJ_G0030122.1 mouse_genomes_project 6 818225 823633 - Bet1 protein_coding processed_transcript MGP_C3HHeJ_T0002128.1 MGP_C3HHeJ_G0002049.1 mouse_genomes_project 6 140708390 140709998 - TEC TEC MGP_C3HHeJ_T0079221.1 MGP_C3HHeJ_G0030856.1 mouse_genomes_project 6 112065390 112070628 + MGP_C3HHeJ_P0079221 Vamp8 protein_coding protein_coding MGP_C3HHeJ_T0079222.1 MGP_C3HHeJ_G0030856.1 mouse_genomes_project 6 112066182 112070623 + MGP_C3HHeJ_P0079222 Vamp8 protein_coding protein_coding MGP_C3HHeJ_T0001931.1 MGP_C3HHeJ_G0001853.1 mouse_genomes_project 6 43505123 43507387 + TEC TEC MGP_C3HHeJ_T0005033.1 MGP_C3HHeJ_G0004288.1 mouse_genomes_project 6 138136785 138144815 + Gm19434 antisense antisense MGP_C3HHeJ_T0076902.1 MGP_C3HHeJ_G0030369.1 mouse_genomes_project 6 41298723 41299665 + MGP_C3HHeJ_P0076902 Olfr435 protein_coding protein_coding MGP_C3HHeJ_T0001895.1 MGP_C3HHeJ_G0001817.1 mouse_genomes_project 6 18889365 18893444 + TEC TEC MGP_C3HHeJ_T0079484.1 MGP_C3HHeJ_G0030914.1 mouse_genomes_project 6 122708093 122747137 + MGP_C3HHeJ_P0079484 Slc6a13 protein_coding protein_coding MGP_C3HHeJ_T0079485.1 MGP_C3HHeJ_G0030914.1 mouse_genomes_project 6 122708155 122742994 + Slc6a13 protein_coding retained_intron MGP_C3HHeJ_T0079486.1 MGP_C3HHeJ_G0030914.1 mouse_genomes_project 6 122708155 122711167 + Slc6a13 protein_coding retained_intron MGP_C3HHeJ_T0079487.1 MGP_C3HHeJ_G0030914.1 mouse_genomes_project 6 122708648 122733755 + MGP_C3HHeJ_P0079487 Slc6a13 protein_coding protein_coding MGP_C3HHeJ_T0018008.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843364 28964653 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018009.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843364 28964810 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018010.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843364 28964779 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018011.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843370 28964798 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018012.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843418 28964783 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018013.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843418 28964791 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018014.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843435 28964716 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018015.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843435 28954459 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018016.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843448 28964803 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018017.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843454 28964779 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018018.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28843460 28964806 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018019.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28903994 28919329 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018020.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28911140 28964809 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0018021.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28918642 28919775 + 2210408F21Rik processed_transcript TEC MGP_C3HHeJ_T0018022.1 MGP_C3HHeJ_G0015386.1 mouse_genomes_project 6 28948080 28964791 + 2210408F21Rik processed_transcript lincRNA MGP_C3HHeJ_T0004855.1 MGP_C3HHeJ_G0004162.1 mouse_genomes_project 6 31843505 31865810 + Gm13856 antisense antisense MGP_C3HHeJ_T0004985.1 MGP_C3HHeJ_G0004247.1 mouse_genomes_project 6 102240984 102243113 + Gm15864 antisense antisense MGP_C3HHeJ_T0002081.1 MGP_C3HHeJ_G0002002.1 mouse_genomes_project 6 111784740 111786027 - TEC TEC MGP_C3HHeJ_T0079153.1 MGP_C3HHeJ_G0030843.1 mouse_genomes_project 6 110958687 110959782 + MGP_C3HHeJ_P0079153 4931417E11Rik protein_coding protein_coding MGP_C3HHeJ_T0079154.1 MGP_C3HHeJ_G0030843.1 mouse_genomes_project 6 110958735 110959774 + 4931417E11Rik protein_coding processed_transcript MGP_C3HHeJ_T0079155.1 MGP_C3HHeJ_G0030843.1 mouse_genomes_project 6 110958790 110959708 + 4931417E11Rik protein_coding transcribed_processed_pseudogene MGP_C3HHeJ_T0015462.1 MGP_C3HHeJ_G0013566.1 mouse_genomes_project 6 144007318 144007524 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010706.1 MGP_C3HHeJ_G0008839.1 mouse_genomes_project 6 96073307 96073435 + miRNA miRNA MGP_C3HHeJ_T0011532.1 MGP_C3HHeJ_G0009665.1 mouse_genomes_project 6 14713817 14714073 + Gm27542 misc_RNA misc_RNA MGP_C3HHeJ_T0080385.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141513353 141743257 - MGP_C3HHeJ_P0080385 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0080386.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141514631 141575671 - MGP_C3HHeJ_P0080386 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0080387.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141515397 141578829 - MGP_C3HHeJ_P0080387 Lmo3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080388.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141516026 141577195 - MGP_C3HHeJ_P0080388 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0080389.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141516030 141577138 - MGP_C3HHeJ_P0080389 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0080390.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141516337 141581392 - MGP_C3HHeJ_P0080390 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0080391.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141529100 141577220 - MGP_C3HHeJ_P0080391 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0080392.1 MGP_C3HHeJ_G0031145.1 mouse_genomes_project 6 141570032 141581046 - MGP_C3HHeJ_P0080392 Lmo3 protein_coding protein_coding MGP_C3HHeJ_T0008522.1 MGP_C3HHeJ_G0006881.1 mouse_genomes_project 6 51063836 51071486 + 1700094M24Rik lincRNA lincRNA MGP_C3HHeJ_T0015234.1 MGP_C3HHeJ_G0013338.1 mouse_genomes_project 6 75530476 75531088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076686.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37216885 37266740 - MGP_C3HHeJ_P0076686 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076687.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37218097 37266737 - MGP_C3HHeJ_P0076687 Slc37a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076688.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37218098 37235313 - Slc37a3 protein_coding processed_transcript MGP_C3HHeJ_T0076689.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37218101 37261995 - MGP_C3HHeJ_P0076689 Slc37a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076690.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37218718 37234717 - Slc37a3 protein_coding processed_transcript MGP_C3HHeJ_T0076691.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37231248 37234689 - Slc37a3 protein_coding retained_intron MGP_C3HHeJ_T0076692.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37242303 37266724 - MGP_C3HHeJ_P0076692 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076693.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37244785 37266737 - MGP_C3HHeJ_P0076693 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076694.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37247723 37266712 - MGP_C3HHeJ_P0076694 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076695.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37247748 37266701 - MGP_C3HHeJ_P0076695 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076696.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37247750 37266727 - MGP_C3HHeJ_P0076696 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076697.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37255960 37266722 - MGP_C3HHeJ_P0076697 Slc37a3 protein_coding protein_coding MGP_C3HHeJ_T0076698.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37256734 37266704 - Slc37a3 protein_coding processed_transcript MGP_C3HHeJ_T0076699.1 MGP_C3HHeJ_G0030291.1 mouse_genomes_project 6 37256743 37266683 - Slc37a3 protein_coding processed_transcript MGP_C3HHeJ_T0101247.1 MGP_C3HHeJ_G0039369.1 mouse_genomes_project 6 83370452 83372666 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101248.1 MGP_C3HHeJ_G0039369.1 mouse_genomes_project 6 83372537 83373569 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0015128.1 MGP_C3HHeJ_G0013232.1 mouse_genomes_project 6 39237256 39237700 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001942.1 MGP_C3HHeJ_G0001864.1 mouse_genomes_project 6 44656054 44658584 + TEC TEC MGP_C3HHeJ_T0078939.1 MGP_C3HHeJ_G0030798.1 mouse_genomes_project 6 100704151 100728223 + MGP_C3HHeJ_P0078939 Actg2 protein_coding protein_coding MGP_C3HHeJ_T0078940.1 MGP_C3HHeJ_G0030798.1 mouse_genomes_project 6 100704193 100721463 + MGP_C3HHeJ_P0078940 Actg2 protein_coding protein_coding MGP_C3HHeJ_T0078941.1 MGP_C3HHeJ_G0030798.1 mouse_genomes_project 6 100713323 100728216 + MGP_C3HHeJ_P0078941 Actg2 protein_coding protein_coding MGP_C3HHeJ_T0078942.1 MGP_C3HHeJ_G0030798.1 mouse_genomes_project 6 100713503 100720549 + MGP_C3HHeJ_P0078942 Actg2 protein_coding protein_coding MGP_C3HHeJ_T0078943.1 MGP_C3HHeJ_G0030798.1 mouse_genomes_project 6 100713822 100721322 + MGP_C3HHeJ_P0078943 Actg2 protein_coding protein_coding MGP_C3HHeJ_T0078944.1 MGP_C3HHeJ_G0030798.1 mouse_genomes_project 6 100714409 100721463 + Actg2 protein_coding processed_transcript MGP_C3HHeJ_T0004854.1 MGP_C3HHeJ_G0004161.1 mouse_genomes_project 6 30697513 30702268 + Gm14540 antisense antisense MGP_C3HHeJ_T0078322.1 MGP_C3HHeJ_G0030674.1 mouse_genomes_project 6 91796377 91804953 - Fgd5 protein_coding retained_intron MGP_C3HHeJ_T0078323.1 MGP_C3HHeJ_G0030674.1 mouse_genomes_project 6 91797775 91894764 - MGP_C3HHeJ_P0078323 Fgd5 protein_coding protein_coding MGP_C3HHeJ_T0078324.1 MGP_C3HHeJ_G0030674.1 mouse_genomes_project 6 91798166 91801194 - Fgd5 protein_coding retained_intron MGP_C3HHeJ_T0008589.1 MGP_C3HHeJ_G0006936.1 mouse_genomes_project 6 94728265 94729590 + Gm44204 lincRNA lincRNA MGP_C3HHeJ_T0077583.1 MGP_C3HHeJ_G0030535.1 mouse_genomes_project 6 63542145 63545306 - MGP_C3HHeJ_P0077583 Fbxl14 protein_coding protein_coding MGP_C3HHeJ_T0077095.1 MGP_C3HHeJ_G0030414.1 mouse_genomes_project 6 47484249 47499827 + MGP_C3HHeJ_P0077095 Malsu1 protein_coding protein_coding MGP_C3HHeJ_T0077096.1 MGP_C3HHeJ_G0030414.1 mouse_genomes_project 6 47484302 47499827 + MGP_C3HHeJ_P0077096 Malsu1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077097.1 MGP_C3HHeJ_G0030414.1 mouse_genomes_project 6 47484346 47493204 + Malsu1 protein_coding processed_transcript MGP_C3HHeJ_T0077098.1 MGP_C3HHeJ_G0030414.1 mouse_genomes_project 6 47484528 47496610 + Malsu1 protein_coding processed_transcript MGP_C3HHeJ_T0077099.1 MGP_C3HHeJ_G0030414.1 mouse_genomes_project 6 47495660 47497754 + Malsu1 protein_coding retained_intron MGP_C3HHeJ_T0010720.1 MGP_C3HHeJ_G0008853.1 mouse_genomes_project 6 124504967 124505028 + Mir7231 miRNA miRNA MGP_C3HHeJ_T0015457.1 MGP_C3HHeJ_G0013561.1 mouse_genomes_project 6 143234516 143235706 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004939.1 MGP_C3HHeJ_G0004223.1 mouse_genomes_project 6 95172106 95176523 - Gm15612 antisense antisense MGP_C3HHeJ_T0015179.1 MGP_C3HHeJ_G0013283.1 mouse_genomes_project 6 57252439 57252808 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008430.1 MGP_C3HHeJ_G0006820.1 mouse_genomes_project 6 13534443 13564152 + Gm43998 lincRNA lincRNA MGP_C3HHeJ_T0008665.1 MGP_C3HHeJ_G0006997.1 mouse_genomes_project 6 137868197 137895422 + Lockd lincRNA lincRNA MGP_C3HHeJ_T0008666.1 MGP_C3HHeJ_G0006997.1 mouse_genomes_project 6 137868203 137890230 + Lockd lincRNA lincRNA MGP_C3HHeJ_T0008667.1 MGP_C3HHeJ_G0006997.1 mouse_genomes_project 6 137868203 137890464 + Lockd lincRNA lincRNA MGP_C3HHeJ_T0008668.1 MGP_C3HHeJ_G0006997.1 mouse_genomes_project 6 137868238 137890462 + Lockd lincRNA lincRNA MGP_C3HHeJ_T0008669.1 MGP_C3HHeJ_G0006997.1 mouse_genomes_project 6 137868260 137890605 + Lockd lincRNA lincRNA MGP_C3HHeJ_T0015341.1 MGP_C3HHeJ_G0013445.1 mouse_genomes_project 6 117211695 117212774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015420.1 MGP_C3HHeJ_G0013524.1 mouse_genomes_project 6 130648681 130649087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002130.1 MGP_C3HHeJ_G0002051.1 mouse_genomes_project 6 142758991 142760273 - TEC TEC MGP_C3HHeJ_T0010725.1 MGP_C3HHeJ_G0008858.1 mouse_genomes_project 6 127169529 127169658 - Mir8113 miRNA miRNA MGP_C3HHeJ_T0015221.1 MGP_C3HHeJ_G0013325.1 mouse_genomes_project 6 70256844 70256971 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002070.1 MGP_C3HHeJ_G0001991.1 mouse_genomes_project 6 106708693 106710180 + TEC TEC MGP_C3HHeJ_T0099528.1 MGP_C3HHeJ_G0037722.1 mouse_genomes_project 6 79904377 79904439 - Gm24784 snRNA snRNA MGP_C3HHeJ_T0076589.1 MGP_C3HHeJ_G0030270.1 mouse_genomes_project 6 34472439 34579774 - MGP_C3HHeJ_P0076589 Ptn protein_coding protein_coding MGP_C3HHeJ_T0076590.1 MGP_C3HHeJ_G0030270.1 mouse_genomes_project 6 34500153 34579733 - MGP_C3HHeJ_P0076590 Ptn protein_coding protein_coding MGP_C3HHeJ_T0101428.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46268624 46281432 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101429.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46268648 46275032 + transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101430.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46268656 46275048 + transcribed_unprocessed_pseudogene retained_intron MGP_C3HHeJ_T0101431.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46268661 46273614 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101432.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46268661 46280036 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101433.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46268703 46280457 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101434.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46272301 46275872 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101435.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46272369 46278221 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101436.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46272760 46282800 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101437.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46272773 46280458 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101438.1 MGP_C3HHeJ_G0039456.1 mouse_genomes_project 6 46273560 46280457 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0102120.1 MGP_C3HHeJ_G0040084.1 mouse_genomes_project 6 131155557 131155671 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0076888.1 MGP_C3HHeJ_G0030360.1 mouse_genomes_project 6 40875829 40879720 + MGP_C3HHeJ_P0076888 Olfr449 protein_coding protein_coding MGP_C3HHeJ_T0076889.1 MGP_C3HHeJ_G0030360.1 mouse_genomes_project 6 40875829 40879906 + MGP_C3HHeJ_P0076889 Olfr449 protein_coding protein_coding MGP_C3HHeJ_T0076890.1 MGP_C3HHeJ_G0030360.1 mouse_genomes_project 6 40875877 40879386 + MGP_C3HHeJ_P0076890 Olfr449 protein_coding protein_coding MGP_C3HHeJ_T0076891.1 MGP_C3HHeJ_G0030360.1 mouse_genomes_project 6 40879297 40880334 + MGP_C3HHeJ_P0076891 Olfr449 protein_coding protein_coding MGP_C3HHeJ_T0011551.1 MGP_C3HHeJ_G0009684.1 mouse_genomes_project 6 50798006 50798097 + Gm27695 misc_RNA misc_RNA MGP_C3HHeJ_T0008562.1 MGP_C3HHeJ_G0006917.1 mouse_genomes_project 6 81764236 81801044 - Gm9871 lincRNA lincRNA MGP_C3HHeJ_T0008563.1 MGP_C3HHeJ_G0006917.1 mouse_genomes_project 6 81764403 81771506 - Gm9871 lincRNA lincRNA MGP_C3HHeJ_T0008564.1 MGP_C3HHeJ_G0006917.1 mouse_genomes_project 6 81764608 81770004 - Gm9871 lincRNA lincRNA MGP_C3HHeJ_T0015205.1 MGP_C3HHeJ_G0013309.1 mouse_genomes_project 6 66161910 66162340 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078678.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97308967 97373206 + MGP_C3HHeJ_P0078678 Anxa4 protein_coding protein_coding MGP_C3HHeJ_T0078679.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97308987 97366854 + MGP_C3HHeJ_P0078679 Anxa4 protein_coding protein_coding MGP_C3HHeJ_T0078680.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97308987 97368079 + MGP_C3HHeJ_P0078680 Anxa4 protein_coding protein_coding MGP_C3HHeJ_T0078681.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97341301 97360123 + Anxa4 protein_coding retained_intron MGP_C3HHeJ_T0078682.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97341301 97373207 + MGP_C3HHeJ_P0078682 Anxa4 protein_coding protein_coding MGP_C3HHeJ_T0078683.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97341387 97373200 + MGP_C3HHeJ_P0078683 Anxa4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078684.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97341404 97368086 + MGP_C3HHeJ_P0078684 Anxa4 protein_coding protein_coding MGP_C3HHeJ_T0078685.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97346503 97372321 + MGP_C3HHeJ_P0078685 Anxa4 protein_coding protein_coding MGP_C3HHeJ_T0078686.1 MGP_C3HHeJ_G0030748.1 mouse_genomes_project 6 97364886 97372392 + Anxa4 protein_coding retained_intron MGP_C3HHeJ_T0077386.1 MGP_C3HHeJ_G0030483.1 mouse_genomes_project 6 55771787 55912311 + MGP_C3HHeJ_P0077386 protein_coding protein_coding MGP_C3HHeJ_T0015185.1 MGP_C3HHeJ_G0013289.1 mouse_genomes_project 6 58120054 58120258 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075780.1 MGP_C3HHeJ_G0030118.1 mouse_genomes_project 6 408008 492263 - MGP_C3HHeJ_P0075780 Calcr protein_coding protein_coding MGP_C3HHeJ_T0075781.1 MGP_C3HHeJ_G0030118.1 mouse_genomes_project 6 408048 493347 - MGP_C3HHeJ_P0075781 Calcr protein_coding protein_coding MGP_C3HHeJ_T0075782.1 MGP_C3HHeJ_G0030118.1 mouse_genomes_project 6 408061 493291 - MGP_C3HHeJ_P0075782 Calcr protein_coding protein_coding MGP_C3HHeJ_T0075783.1 MGP_C3HHeJ_G0030118.1 mouse_genomes_project 6 409150 481636 - MGP_C3HHeJ_P0075783 Calcr protein_coding protein_coding MGP_C3HHeJ_T0075784.1 MGP_C3HHeJ_G0030118.1 mouse_genomes_project 6 409150 481636 - MGP_C3HHeJ_P0075784 Calcr protein_coding protein_coding MGP_C3HHeJ_T0002607.1 MGP_C3HHeJ_G0002501.1 mouse_genomes_project 6 39026330 39026986 + MGP_C3HHeJ_P0002607 Trbv2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0001938.1 MGP_C3HHeJ_G0001860.1 mouse_genomes_project 6 44289684 44291873 + TEC TEC MGP_C3HHeJ_T0015187.1 MGP_C3HHeJ_G0013291.1 mouse_genomes_project 6 59485886 59486068 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004967.1 MGP_C3HHeJ_G0004239.1 mouse_genomes_project 6 100126019 100138826 + Gm15475 antisense antisense MGP_C3HHeJ_T0015469.1 MGP_C3HHeJ_G0013573.1 mouse_genomes_project 6 149854693 149855088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079100.1 MGP_C3HHeJ_G0030828.1 mouse_genomes_project 6 102200697 102251933 - MGP_C3HHeJ_P0079100 Eva1a protein_coding protein_coding MGP_C3HHeJ_T0079101.1 MGP_C3HHeJ_G0030828.1 mouse_genomes_project 6 102201636 102241259 - MGP_C3HHeJ_P0079101 Eva1a protein_coding protein_coding MGP_C3HHeJ_T0079102.1 MGP_C3HHeJ_G0030828.1 mouse_genomes_project 6 102201901 102252532 - MGP_C3HHeJ_P0079102 Eva1a protein_coding protein_coding MGP_C3HHeJ_T0079103.1 MGP_C3HHeJ_G0030828.1 mouse_genomes_project 6 102246405 102251868 - Eva1a protein_coding processed_transcript MGP_C3HHeJ_T0015361.1 MGP_C3HHeJ_G0013465.1 mouse_genomes_project 6 118745502 118745668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077637.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64593503 64624170 + MGP_C3HHeJ_P0077637 Zfp248 protein_coding protein_coding MGP_C3HHeJ_T0077638.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64593529 64595933 + Zfp248 protein_coding retained_intron MGP_C3HHeJ_T0077639.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64593533 64622804 + MGP_C3HHeJ_P0077639 Zfp248 protein_coding protein_coding MGP_C3HHeJ_T0077640.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64593560 64595900 + Zfp248 protein_coding retained_intron MGP_C3HHeJ_T0077641.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64593612 64617326 + Zfp248 protein_coding processed_transcript MGP_C3HHeJ_T0077642.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64593966 64617248 + MGP_C3HHeJ_P0077642 Zfp248 protein_coding protein_coding MGP_C3HHeJ_T0077643.1 MGP_C3HHeJ_G0030543.1 mouse_genomes_project 6 64594275 64595864 + Zfp248 protein_coding processed_transcript MGP_C3HHeJ_T0002026.1 MGP_C3HHeJ_G0001947.1 mouse_genomes_project 6 95283441 95286612 - TEC TEC MGP_C3HHeJ_T0077357.1 MGP_C3HHeJ_G0030473.1 mouse_genomes_project 6 55402369 55405999 - Lsm5 protein_coding retained_intron MGP_C3HHeJ_T0077358.1 MGP_C3HHeJ_G0030473.1 mouse_genomes_project 6 55402561 55405990 - MGP_C3HHeJ_P0077358 Lsm5 protein_coding protein_coding MGP_C3HHeJ_T0102109.1 MGP_C3HHeJ_G0040074.1 mouse_genomes_project 6 110995584 110996488 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015218.1 MGP_C3HHeJ_G0013322.1 mouse_genomes_project 6 69786410 69786819 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080794.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 152928750 152939082 + Bicd1 protein_coding retained_intron MGP_C3HHeJ_T0080795.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 152928848 153101513 + MGP_C3HHeJ_P0080795 Bicd1 protein_coding protein_coding MGP_C3HHeJ_T0080796.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 152928880 153096003 + MGP_C3HHeJ_P0080796 Bicd1 protein_coding protein_coding MGP_C3HHeJ_T0080797.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 152928933 153028570 + Bicd1 protein_coding retained_intron MGP_C3HHeJ_T0080798.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 152929293 153094905 + MGP_C3HHeJ_P0080798 Bicd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080799.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 152929293 153094905 + MGP_C3HHeJ_P0080799 Bicd1 protein_coding protein_coding MGP_C3HHeJ_T0080800.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 153044636 153050117 + Bicd1 protein_coding retained_intron MGP_C3HHeJ_T0080801.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 153047740 153051262 + MGP_C3HHeJ_P0080801 Bicd1 protein_coding protein_coding MGP_C3HHeJ_T0080802.1 MGP_C3HHeJ_G0031215.1 mouse_genomes_project 6 153083315 153097041 + Bicd1 protein_coding retained_intron MGP_C3HHeJ_T0076903.1 MGP_C3HHeJ_G0030370.1 mouse_genomes_project 6 41312318 41313374 + MGP_C3HHeJ_P0076903 Olfr434 protein_coding protein_coding MGP_C3HHeJ_T0076904.1 MGP_C3HHeJ_G0030370.1 mouse_genomes_project 6 41312346 41313549 + MGP_C3HHeJ_P0076904 Olfr434 protein_coding protein_coding MGP_C3HHeJ_T0002154.1 MGP_C3HHeJ_G0002075.1 mouse_genomes_project 6 153109178 153112431 + TEC TEC MGP_C3HHeJ_T0000184.1 MGP_C3HHeJ_G0000139.1 mouse_genomes_project 6 116481661 116482147 - MGP_C3HHeJ_P0000184 Igkv15-103 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015251.1 MGP_C3HHeJ_G0013355.1 mouse_genomes_project 6 82874077 82874660 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076738.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38271704 38345116 + MGP_C3HHeJ_P0076738 Agk protein_coding protein_coding MGP_C3HHeJ_T0076739.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38271975 38345289 + MGP_C3HHeJ_P0076739 Agk protein_coding unknown_likely_coding MGP_C3HHeJ_T0076740.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38272017 38316223 + Agk protein_coding retained_intron MGP_C3HHeJ_T0076741.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38272019 38273300 + Agk protein_coding retained_intron MGP_C3HHeJ_T0076742.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38272040 38296722 + Agk protein_coding retained_intron MGP_C3HHeJ_T0076743.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38275901 38295371 + Agk protein_coding processed_transcript MGP_C3HHeJ_T0076744.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38275901 38304811 + MGP_C3HHeJ_P0076744 Agk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076745.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38297266 38300276 + Agk protein_coding retained_intron MGP_C3HHeJ_T0076746.1 MGP_C3HHeJ_G0030301.1 mouse_genomes_project 6 38323372 38343063 + Agk protein_coding retained_intron MGP_C3HHeJ_T0015409.1 MGP_C3HHeJ_G0013513.1 mouse_genomes_project 6 129021682 129022413 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010705.1 MGP_C3HHeJ_G0008838.1 mouse_genomes_project 6 95937235 95937366 + Mir6376 miRNA miRNA MGP_C3HHeJ_T0018086.1 MGP_C3HHeJ_G0015409.1 mouse_genomes_project 6 127199502 127224997 + processed_transcript antisense MGP_C3HHeJ_T0018087.1 MGP_C3HHeJ_G0015409.1 mouse_genomes_project 6 127199551 127200555 + processed_transcript retained_intron MGP_C3HHeJ_T0018088.1 MGP_C3HHeJ_G0015409.1 mouse_genomes_project 6 127199571 127204513 + processed_transcript antisense MGP_C3HHeJ_T0018089.1 MGP_C3HHeJ_G0015409.1 mouse_genomes_project 6 127199645 127209758 + processed_transcript antisense MGP_C3HHeJ_T0008529.1 MGP_C3HHeJ_G0006887.1 mouse_genomes_project 6 54351256 54361240 + Gm3279 lincRNA lincRNA MGP_C3HHeJ_T0002024.1 MGP_C3HHeJ_G0001945.1 mouse_genomes_project 6 95235338 95239697 + TEC TEC MGP_C3HHeJ_T0015216.1 MGP_C3HHeJ_G0013320.1 mouse_genomes_project 6 69143393 69143469 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008661.1 MGP_C3HHeJ_G0006993.1 mouse_genomes_project 6 134677725 134678591 + lincRNA lincRNA MGP_C3HHeJ_T0008608.1 MGP_C3HHeJ_G0006951.1 mouse_genomes_project 6 99797467 99808346 + Gm10445 lincRNA lincRNA MGP_C3HHeJ_T0005034.1 MGP_C3HHeJ_G0004289.1 mouse_genomes_project 6 138236839 138291704 + Gm44276 antisense antisense MGP_C3HHeJ_T0099507.1 MGP_C3HHeJ_G0037701.1 mouse_genomes_project 6 26989607 26989713 - Gm26484 snRNA snRNA MGP_C3HHeJ_T0015359.1 MGP_C3HHeJ_G0013463.1 mouse_genomes_project 6 118626379 118626959 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076127.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547135 21149358 - MGP_C3HHeJ_P0076127 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076128.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547135 21149130 - MGP_C3HHeJ_P0076128 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076129.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547135 21149359 - MGP_C3HHeJ_P0076129 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076130.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547185 21149163 - MGP_C3HHeJ_P0076130 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076131.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547200 21149075 - MGP_C3HHeJ_P0076131 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076132.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547201 21149162 - MGP_C3HHeJ_P0076132 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076133.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547205 20646067 - Cadps2 protein_coding processed_transcript MGP_C3HHeJ_T0076134.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547857 20890790 - MGP_C3HHeJ_P0076134 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076135.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547857 21149081 - MGP_C3HHeJ_P0076135 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076136.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20547858 20603768 - Cadps2 protein_coding processed_transcript MGP_C3HHeJ_T0076137.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20702914 21149201 - MGP_C3HHeJ_P0076137 Cadps2 protein_coding protein_coding MGP_C3HHeJ_T0076138.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20885074 21149238 - Cadps2 protein_coding retained_intron MGP_C3HHeJ_T0076142.1 MGP_C3HHeJ_G0030184.1 mouse_genomes_project 6 20996566 21149200 - Cadps2 protein_coding retained_intron MGP_C3HHeJ_T0010662.1 MGP_C3HHeJ_G0008795.1 mouse_genomes_project 6 20022592 20022695 - Gm23961 miRNA miRNA MGP_C3HHeJ_T0008523.1 MGP_C3HHeJ_G0006882.1 mouse_genomes_project 6 51081680 51088229 + Gm44028 lincRNA lincRNA MGP_C3HHeJ_T0015418.1 MGP_C3HHeJ_G0013522.1 mouse_genomes_project 6 130390794 130391191 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008415.1 MGP_C3HHeJ_G0006810.1 mouse_genomes_project 6 3333946 3346993 + lincRNA lincRNA MGP_C3HHeJ_T0004827.1 MGP_C3HHeJ_G0004142.1 mouse_genomes_project 6 2777502 2792782 - 1700019G24Rik antisense antisense MGP_C3HHeJ_T0002092.1 MGP_C3HHeJ_G0002013.1 mouse_genomes_project 6 113108495 113112368 + TEC TEC MGP_C3HHeJ_T0001899.1 MGP_C3HHeJ_G0001821.1 mouse_genomes_project 6 25633968 25637766 - TEC TEC MGP_C3HHeJ_T0008432.1 MGP_C3HHeJ_G0006822.1 mouse_genomes_project 6 14047735 14053926 - Gm15473 lincRNA lincRNA MGP_C3HHeJ_T0077932.1 MGP_C3HHeJ_G0030600.1 mouse_genomes_project 6 69723888 69731901 + MGP_C3HHeJ_P0077932 Prrt3 protein_coding protein_coding MGP_C3HHeJ_T0077933.1 MGP_C3HHeJ_G0030600.1 mouse_genomes_project 6 69723926 69729526 + MGP_C3HHeJ_P0077933 Prrt3 protein_coding protein_coding MGP_C3HHeJ_T0077934.1 MGP_C3HHeJ_G0030600.1 mouse_genomes_project 6 69723932 69729558 + MGP_C3HHeJ_P0077934 Prrt3 protein_coding protein_coding MGP_C3HHeJ_T0077935.1 MGP_C3HHeJ_G0030600.1 mouse_genomes_project 6 69723936 69732187 + MGP_C3HHeJ_P0077935 Prrt3 protein_coding protein_coding MGP_C3HHeJ_T0077936.1 MGP_C3HHeJ_G0030600.1 mouse_genomes_project 6 69724001 69731731 + MGP_C3HHeJ_P0077936 Prrt3 protein_coding protein_coding MGP_C3HHeJ_T0001950.1 MGP_C3HHeJ_G0001872.1 mouse_genomes_project 6 51135853 51138536 + TEC TEC MGP_C3HHeJ_T0015116.1 MGP_C3HHeJ_G0013220.1 mouse_genomes_project 6 34396158 34396587 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100785.1 MGP_C3HHeJ_G0038979.1 mouse_genomes_project 6 116385057 116385190 - Gm25833 snoRNA snoRNA MGP_C3HHeJ_T0077273.1 MGP_C3HHeJ_G0030454.1 mouse_genomes_project 6 53048115 53127497 + MGP_C3HHeJ_P0077273 Wipf3 protein_coding protein_coding MGP_C3HHeJ_T0077274.1 MGP_C3HHeJ_G0030454.1 mouse_genomes_project 6 53048115 53127497 + MGP_C3HHeJ_P0077274 Wipf3 protein_coding protein_coding MGP_C3HHeJ_T0077275.1 MGP_C3HHeJ_G0030454.1 mouse_genomes_project 6 53072220 53127500 + MGP_C3HHeJ_P0077275 Wipf3 protein_coding protein_coding MGP_C3HHeJ_T0077276.1 MGP_C3HHeJ_G0030454.1 mouse_genomes_project 6 53072220 53127500 + MGP_C3HHeJ_P0077276 Wipf3 protein_coding protein_coding MGP_C3HHeJ_T0077277.1 MGP_C3HHeJ_G0030454.1 mouse_genomes_project 6 53093906 53107783 + Wipf3 protein_coding processed_transcript MGP_C3HHeJ_T0077278.1 MGP_C3HHeJ_G0030454.1 mouse_genomes_project 6 53111639 53115275 + Wipf3 protein_coding retained_intron MGP_C3HHeJ_T0015451.1 MGP_C3HHeJ_G0013555.1 mouse_genomes_project 6 139376246 139377432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100740.1 MGP_C3HHeJ_G0038934.1 mouse_genomes_project 6 11056524 11056640 + Gm23760 snoRNA snoRNA MGP_C3HHeJ_T0015460.1 MGP_C3HHeJ_G0013564.1 mouse_genomes_project 6 143316998 143317440 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077085.1 MGP_C3HHeJ_G0030410.1 mouse_genomes_project 6 47340362 47344152 + MGP_C3HHeJ_P0077085 1600015I10Rik protein_coding protein_coding MGP_C3HHeJ_T0078495.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95116223 95132256 + MGP_C3HHeJ_P0078495 Mcm2 protein_coding protein_coding MGP_C3HHeJ_T0078496.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95116302 95121917 + Mcm2 protein_coding processed_transcript MGP_C3HHeJ_T0078497.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95116315 95121806 + MGP_C3HHeJ_P0078497 Mcm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078498.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95116326 95118056 + Mcm2 protein_coding retained_intron MGP_C3HHeJ_T0078499.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95121231 95121790 + Mcm2 protein_coding retained_intron MGP_C3HHeJ_T0078500.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95121773 95125077 + MGP_C3HHeJ_P0078500 Mcm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078501.1 MGP_C3HHeJ_G0030715.1 mouse_genomes_project 6 95123043 95126537 + Mcm2 protein_coding retained_intron MGP_C3HHeJ_T0099501.1 MGP_C3HHeJ_G0037695.1 mouse_genomes_project 6 14451787 14451891 + Gm25021 snRNA snRNA MGP_C3HHeJ_T0078906.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100438744 100440615 - Nagk protein_coding retained_intron MGP_C3HHeJ_T0078907.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100439342 100447533 - MGP_C3HHeJ_P0078907 Nagk protein_coding protein_coding MGP_C3HHeJ_T0078908.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100440206 100447786 - MGP_C3HHeJ_P0078908 Nagk protein_coding protein_coding MGP_C3HHeJ_T0078909.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100440208 100447740 - MGP_C3HHeJ_P0078909 Nagk protein_coding protein_coding MGP_C3HHeJ_T0078910.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100440428 100447560 - Nagk protein_coding processed_transcript MGP_C3HHeJ_T0078911.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100441630 100444784 - Nagk protein_coding processed_transcript MGP_C3HHeJ_T0078912.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100442487 100445735 - Nagk protein_coding retained_intron MGP_C3HHeJ_T0078913.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100443401 100444817 - Nagk protein_coding retained_intron MGP_C3HHeJ_T0078914.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100444145 100447607 - Nagk protein_coding retained_intron MGP_C3HHeJ_T0078915.1 MGP_C3HHeJ_G0030790.1 mouse_genomes_project 6 100445774 100446526 - Nagk protein_coding retained_intron MGP_C3HHeJ_T0015263.1 MGP_C3HHeJ_G0013367.1 mouse_genomes_project 6 88504269 88504620 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077066.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47239697 47246941 - MGP_C3HHeJ_P0077066 Tmem176b protein_coding protein_coding MGP_C3HHeJ_T0077067.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47240493 47246640 - MGP_C3HHeJ_P0077067 Tmem176b protein_coding protein_coding MGP_C3HHeJ_T0077068.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47241322 47246957 - MGP_C3HHeJ_P0077068 Tmem176b protein_coding protein_coding MGP_C3HHeJ_T0077069.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47241322 47247375 - MGP_C3HHeJ_P0077069 Tmem176b protein_coding protein_coding MGP_C3HHeJ_T0077070.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47241324 47246627 - MGP_C3HHeJ_P0077070 Tmem176b protein_coding protein_coding MGP_C3HHeJ_T0077071.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47241391 47246474 - MGP_C3HHeJ_P0077071 Tmem176b protein_coding protein_coding MGP_C3HHeJ_T0077072.1 MGP_C3HHeJ_G0030407.1 mouse_genomes_project 6 47241676 47246334 - Tmem176b protein_coding retained_intron MGP_C3HHeJ_T0008419.1 MGP_C3HHeJ_G0006813.1 mouse_genomes_project 6 4112692 4120524 + Gm19272 lincRNA lincRNA MGP_C3HHeJ_T0008420.1 MGP_C3HHeJ_G0006813.1 mouse_genomes_project 6 4112692 4117538 + Gm19272 lincRNA lincRNA MGP_C3HHeJ_T0008602.1 MGP_C3HHeJ_G0006946.1 mouse_genomes_project 6 97602752 97605118 + Gm44386 lincRNA lincRNA MGP_C3HHeJ_T0102085.1 MGP_C3HHeJ_G0040050.1 mouse_genomes_project 6 56083943 56084301 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078212.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85686336 85900026 - MGP_C3HHeJ_P0078212 Mitf protein_coding protein_coding MGP_C3HHeJ_T0078213.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85688978 85777522 - MGP_C3HHeJ_P0078213 Mitf protein_coding protein_coding MGP_C3HHeJ_T0078214.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85688978 85766437 - MGP_C3HHeJ_P0078214 Mitf protein_coding protein_coding MGP_C3HHeJ_T0078215.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85688978 85715892 - MGP_C3HHeJ_P0078215 Mitf protein_coding protein_coding MGP_C3HHeJ_T0078216.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85689092 85900032 - MGP_C3HHeJ_P0078216 Mitf protein_coding protein_coding MGP_C3HHeJ_T0078217.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85689188 85715865 - MGP_C3HHeJ_P0078217 Mitf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078218.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85689510 85715763 - MGP_C3HHeJ_P0078218 Mitf protein_coding protein_coding MGP_C3HHeJ_T0078219.1 MGP_C3HHeJ_G0030650.1 mouse_genomes_project 6 85765175 85900026 - Mitf protein_coding retained_intron MGP_C3HHeJ_T0077596.1 MGP_C3HHeJ_G0030538.1 mouse_genomes_project 6 63702004 63717650 + MGP_C3HHeJ_P0077596 Lrtm2 protein_coding protein_coding MGP_C3HHeJ_T0077597.1 MGP_C3HHeJ_G0030538.1 mouse_genomes_project 6 63702013 63717650 + MGP_C3HHeJ_P0077597 Lrtm2 protein_coding protein_coding MGP_C3HHeJ_T0077598.1 MGP_C3HHeJ_G0030538.1 mouse_genomes_project 6 63703565 63717650 + MGP_C3HHeJ_P0077598 Lrtm2 protein_coding protein_coding MGP_C3HHeJ_T0077599.1 MGP_C3HHeJ_G0030538.1 mouse_genomes_project 6 63703565 63709119 + MGP_C3HHeJ_P0077599 Lrtm2 protein_coding protein_coding MGP_C3HHeJ_T0008622.1 MGP_C3HHeJ_G0006960.1 mouse_genomes_project 6 108396837 108402429 + Gm44113 lincRNA lincRNA MGP_C3HHeJ_T0001999.1 MGP_C3HHeJ_G0001920.1 mouse_genomes_project 6 83479823 83480215 + TEC TEC MGP_C3HHeJ_T0076344.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27588932 27638355 + MGP_C3HHeJ_P0076344 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076345.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27588970 27638688 + Nrf1 protein_coding retained_intron MGP_C3HHeJ_T0076346.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27588972 27686208 + MGP_C3HHeJ_P0076346 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076347.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27588983 27635132 + MGP_C3HHeJ_P0076347 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076348.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27588986 27693771 + MGP_C3HHeJ_P0076348 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076349.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27589013 27671455 + MGP_C3HHeJ_P0076349 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076350.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27589013 27686545 + MGP_C3HHeJ_P0076350 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076351.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27589092 27629872 + MGP_C3HHeJ_P0076351 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076352.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27616738 27671287 + MGP_C3HHeJ_P0076352 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076353.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27628391 27694720 + MGP_C3HHeJ_P0076353 Nrf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076354.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27629722 27686203 + MGP_C3HHeJ_P0076354 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076355.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27629728 27670992 + MGP_C3HHeJ_P0076355 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076356.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27629728 27686203 + MGP_C3HHeJ_P0076356 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076357.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27629728 27670992 + MGP_C3HHeJ_P0076357 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0076358.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27629767 27630832 + Nrf1 protein_coding retained_intron MGP_C3HHeJ_T0076359.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27637562 27657904 + Nrf1 protein_coding processed_transcript MGP_C3HHeJ_T0076360.1 MGP_C3HHeJ_G0030229.1 mouse_genomes_project 6 27657892 27682252 + MGP_C3HHeJ_P0076360 Nrf1 protein_coding protein_coding MGP_C3HHeJ_T0015244.1 MGP_C3HHeJ_G0013348.1 mouse_genomes_project 6 80338432 80338585 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002022.1 MGP_C3HHeJ_G0001943.1 mouse_genomes_project 6 95092334 95095264 - TEC TEC MGP_C3HHeJ_T0008688.1 MGP_C3HHeJ_G0007010.1 mouse_genomes_project 6 146878335 146937369 - 1700060C16Rik lincRNA lincRNA MGP_C3HHeJ_T0077157.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49985416 49994379 - MGP_C3HHeJ_P0077157 Hnrnpa2b1 protein_coding protein_coding MGP_C3HHeJ_T0077158.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49985605 49994332 - MGP_C3HHeJ_P0077158 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077159.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49985608 49994330 - MGP_C3HHeJ_P0077159 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077160.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49985608 49994330 - MGP_C3HHeJ_P0077160 Hnrnpa2b1 protein_coding protein_coding MGP_C3HHeJ_T0077161.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49985629 49987669 - Hnrnpa2b1 protein_coding retained_intron MGP_C3HHeJ_T0077162.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49987244 49994311 - MGP_C3HHeJ_P0077162 Hnrnpa2b1 protein_coding protein_coding MGP_C3HHeJ_T0077163.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49987244 49994257 - MGP_C3HHeJ_P0077163 Hnrnpa2b1 protein_coding protein_coding MGP_C3HHeJ_T0077164.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49987244 49994257 - MGP_C3HHeJ_P0077164 Hnrnpa2b1 protein_coding protein_coding MGP_C3HHeJ_T0077165.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49987284 49988645 - Hnrnpa2b1 protein_coding retained_intron MGP_C3HHeJ_T0077166.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49987956 49991186 - MGP_C3HHeJ_P0077166 Hnrnpa2b1 protein_coding protein_coding MGP_C3HHeJ_T0077167.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49989116 49990722 - Hnrnpa2b1 protein_coding retained_intron MGP_C3HHeJ_T0077168.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49989486 49991152 - Hnrnpa2b1 protein_coding retained_intron MGP_C3HHeJ_T0077169.1 MGP_C3HHeJ_G0030429.1 mouse_genomes_project 6 49990302 49994369 - Hnrnpa2b1 protein_coding retained_intron MGP_C3HHeJ_T0075796.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1248536 1261135 + MGP_C3HHeJ_P0075796 Col1a2 protein_coding protein_coding MGP_C3HHeJ_T0075797.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1250208 1287021 + MGP_C3HHeJ_P0075797 Col1a2 protein_coding protein_coding MGP_C3HHeJ_T0075798.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1250417 1259735 + Col1a2 protein_coding retained_intron MGP_C3HHeJ_T0075799.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1250417 1259242 + Col1a2 protein_coding retained_intron MGP_C3HHeJ_T0075800.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1266105 1274936 + Col1a2 protein_coding retained_intron MGP_C3HHeJ_T0075801.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1275640 1281362 + Col1a2 protein_coding retained_intron MGP_C3HHeJ_T0075802.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1281257 1282100 + Col1a2 protein_coding retained_intron MGP_C3HHeJ_T0075803.1 MGP_C3HHeJ_G0030123.1 mouse_genomes_project 6 1282965 1283467 + Col1a2 protein_coding retained_intron MGP_C3HHeJ_T0005052.1 MGP_C3HHeJ_G0004304.1 mouse_genomes_project 6 148416697 148420247 + Gm15687 antisense antisense MGP_C3HHeJ_T0075863.1 MGP_C3HHeJ_G0030134.1 mouse_genomes_project 6 2858073 3046761 - MGP_C3HHeJ_P0075863 Slc25a13 protein_coding protein_coding MGP_C3HHeJ_T0075864.1 MGP_C3HHeJ_G0030134.1 mouse_genomes_project 6 2858074 3046816 - MGP_C3HHeJ_P0075864 Slc25a13 protein_coding protein_coding MGP_C3HHeJ_T0075865.1 MGP_C3HHeJ_G0030134.1 mouse_genomes_project 6 2886142 2913189 - Slc25a13 protein_coding processed_transcript MGP_C3HHeJ_T0075866.1 MGP_C3HHeJ_G0030134.1 mouse_genomes_project 6 2933379 2993617 - Slc25a13 protein_coding processed_transcript MGP_C3HHeJ_T0075867.1 MGP_C3HHeJ_G0030134.1 mouse_genomes_project 6 2950543 3019586 - Slc25a13 protein_coding retained_intron MGP_C3HHeJ_T0076587.1 MGP_C3HHeJ_G0030269.1 mouse_genomes_project 6 34138619 34278305 + MGP_C3HHeJ_P0076587 Chrm2 protein_coding protein_coding MGP_C3HHeJ_T0076588.1 MGP_C3HHeJ_G0030269.1 mouse_genomes_project 6 34138730 34193965 + Chrm2 protein_coding processed_transcript MGP_C3HHeJ_T0015322.1 MGP_C3HHeJ_G0013426.1 mouse_genomes_project 6 112587549 112589530 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008490.1 MGP_C3HHeJ_G0006857.1 mouse_genomes_project 6 36402381 36404852 - Gm26699 lincRNA lincRNA MGP_C3HHeJ_T0008645.1 MGP_C3HHeJ_G0006982.1 mouse_genomes_project 6 129297917 129300926 - Gm43635 lincRNA lincRNA MGP_C3HHeJ_T0015424.1 MGP_C3HHeJ_G0013528.1 mouse_genomes_project 6 130913866 130913983 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004915.1 MGP_C3HHeJ_G0004208.1 mouse_genomes_project 6 72671398 72677573 + Gm20387 antisense antisense MGP_C3HHeJ_T0000283.1 MGP_C3HHeJ_G0000233.1 mouse_genomes_project 6 116103932 116104343 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015403.1 MGP_C3HHeJ_G0013507.1 mouse_genomes_project 6 127054112 127059581 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002459.1 MGP_C3HHeJ_G0002375.1 mouse_genomes_project 6 39573019 39573033 + MGP_C3HHeJ_P0002459 Trbd2 TR_D_gene TR_D_gene MGP_C3HHeJ_T0010732.1 MGP_C3HHeJ_G0008865.1 mouse_genomes_project 6 139823918 139824059 - Gm44364 miRNA miRNA MGP_C3HHeJ_T0001914.1 MGP_C3HHeJ_G0001836.1 mouse_genomes_project 6 32572715 32573946 + TEC TEC MGP_C3HHeJ_T0076462.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30437107 30546525 - MGP_C3HHeJ_P0076462 Chchd3 protein_coding protein_coding MGP_C3HHeJ_T0076463.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438348 30722579 - MGP_C3HHeJ_P0076463 Chchd3 protein_coding protein_coding MGP_C3HHeJ_T0076464.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438355 30722555 - MGP_C3HHeJ_P0076464 Chchd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076465.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438768 30552968 - Chchd3 protein_coding processed_transcript MGP_C3HHeJ_T0076466.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438773 30552925 - Chchd3 protein_coding processed_transcript MGP_C3HHeJ_T0076467.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438774 30552918 - Chchd3 protein_coding processed_transcript MGP_C3HHeJ_T0076468.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438785 30455645 - Chchd3 protein_coding processed_transcript MGP_C3HHeJ_T0076469.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30438825 30471962 - Chchd3 protein_coding processed_transcript MGP_C3HHeJ_T0076470.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30455640 30722556 - MGP_C3HHeJ_P0076470 Chchd3 protein_coding protein_coding MGP_C3HHeJ_T0076471.1 MGP_C3HHeJ_G0030248.1 mouse_genomes_project 6 30505373 30722536 - MGP_C3HHeJ_P0076471 Chchd3 protein_coding protein_coding MGP_C3HHeJ_T0100746.1 MGP_C3HHeJ_G0038940.1 mouse_genomes_project 6 26723596 26723727 + Gm26021 snoRNA snoRNA MGP_C3HHeJ_T0005037.1 MGP_C3HHeJ_G0004292.1 mouse_genomes_project 6 141577308 141583204 + A830011K09Rik antisense antisense MGP_C3HHeJ_T0005038.1 MGP_C3HHeJ_G0004292.1 mouse_genomes_project 6 141577403 141581913 + A830011K09Rik antisense antisense MGP_C3HHeJ_T0005039.1 MGP_C3HHeJ_G0004292.1 mouse_genomes_project 6 141577474 141583837 + A830011K09Rik antisense antisense MGP_C3HHeJ_T0080248.1 MGP_C3HHeJ_G0031117.1 mouse_genomes_project 6 138007509 138028719 + MGP_C3HHeJ_P0080248 Gprc5a protein_coding protein_coding MGP_C3HHeJ_T0077744.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 66966674 67009567 + MGP_C3HHeJ_P0077744 Tmcc1 protein_coding protein_coding MGP_C3HHeJ_T0077745.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67002997 67121817 + MGP_C3HHeJ_P0077745 Tmcc1 protein_coding protein_coding MGP_C3HHeJ_T0077746.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67006106 67007706 + Tmcc1 protein_coding retained_intron MGP_C3HHeJ_T0077747.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67006795 67122286 + MGP_C3HHeJ_P0077747 Tmcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077748.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67006905 67124278 + MGP_C3HHeJ_P0077748 Tmcc1 protein_coding protein_coding MGP_C3HHeJ_T0077749.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67007322 67098756 + MGP_C3HHeJ_P0077749 Tmcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077750.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67033557 67039026 + Tmcc1 protein_coding retained_intron MGP_C3HHeJ_T0077751.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67036082 67124448 + MGP_C3HHeJ_P0077751 Tmcc1 protein_coding protein_coding MGP_C3HHeJ_T0077752.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67070434 67121908 + MGP_C3HHeJ_P0077752 Tmcc1 protein_coding protein_coding MGP_C3HHeJ_T0077753.1 MGP_C3HHeJ_G0030566.1 mouse_genomes_project 6 67086463 67091019 + Tmcc1 protein_coding retained_intron MGP_C3HHeJ_T0102077.1 MGP_C3HHeJ_G0040042.1 mouse_genomes_project 6 40755089 40755437 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078879.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100251430 100327829 - MGP_C3HHeJ_P0078879 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078880.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100253880 100327806 - MGP_C3HHeJ_P0078880 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078881.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100253880 100313367 - MGP_C3HHeJ_P0078881 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078882.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100253882 100257150 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078883.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100253882 100327806 - MGP_C3HHeJ_P0078883 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078884.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100254102 100327804 - MGP_C3HHeJ_P0078884 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078885.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100254128 100313367 - MGP_C3HHeJ_P0078885 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078886.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100254134 100256398 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078887.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100254178 100257150 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078888.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100258914 100261142 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078889.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100271520 100293423 - MGP_C3HHeJ_P0078889 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078890.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100272933 100275162 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078891.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100273905 100278896 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078892.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100275217 100327822 - MGP_C3HHeJ_P0078892 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078893.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100284143 100327823 - MGP_C3HHeJ_P0078893 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078894.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100296601 100298681 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078895.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100298287 100327799 - Zfp638 protein_coding processed_transcript MGP_C3HHeJ_T0078896.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100298299 100374029 - MGP_C3HHeJ_P0078896 Zfp638 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078897.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100298323 100327825 - Zfp638 protein_coding processed_transcript MGP_C3HHeJ_T0078898.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100310378 100327825 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0078899.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100313099 100374030 - MGP_C3HHeJ_P0078899 Zfp638 protein_coding protein_coding MGP_C3HHeJ_T0078900.1 MGP_C3HHeJ_G0030788.1 mouse_genomes_project 6 100326299 100327801 - Zfp638 protein_coding retained_intron MGP_C3HHeJ_T0079223.1 MGP_C3HHeJ_G0030857.1 mouse_genomes_project 6 112075247 112087600 + MGP_C3HHeJ_P0079223 Vamp5 protein_coding protein_coding MGP_C3HHeJ_T0079224.1 MGP_C3HHeJ_G0030857.1 mouse_genomes_project 6 112075293 112087606 + MGP_C3HHeJ_P0079224 Vamp5 protein_coding protein_coding MGP_C3HHeJ_T0079225.1 MGP_C3HHeJ_G0030857.1 mouse_genomes_project 6 112084514 112087825 + MGP_C3HHeJ_P0079225 Vamp5 protein_coding protein_coding MGP_C3HHeJ_T0079026.1 MGP_C3HHeJ_G0030812.1 mouse_genomes_project 6 101151292 101152112 - Mrpl53 protein_coding retained_intron MGP_C3HHeJ_T0079027.1 MGP_C3HHeJ_G0030812.1 mouse_genomes_project 6 101151292 101152192 - MGP_C3HHeJ_P0079027 Mrpl53 protein_coding protein_coding MGP_C3HHeJ_T0002006.1 MGP_C3HHeJ_G0001927.1 mouse_genomes_project 6 90640506 90644025 - TEC TEC MGP_C3HHeJ_T0015464.1 MGP_C3HHeJ_G0013568.1 mouse_genomes_project 6 144372836 144373956 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079015.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139090 101141605 + Wbp1 protein_coding retained_intron MGP_C3HHeJ_T0079016.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139090 101141606 + MGP_C3HHeJ_P0079016 Wbp1 protein_coding protein_coding MGP_C3HHeJ_T0079017.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139090 101141606 + MGP_C3HHeJ_P0079017 Wbp1 protein_coding protein_coding MGP_C3HHeJ_T0079018.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139243 101141214 + MGP_C3HHeJ_P0079018 Wbp1 protein_coding protein_coding MGP_C3HHeJ_T0079019.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139262 101141343 + MGP_C3HHeJ_P0079019 Wbp1 protein_coding protein_coding MGP_C3HHeJ_T0079020.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139375 101140091 + MGP_C3HHeJ_P0079020 Wbp1 protein_coding protein_coding MGP_C3HHeJ_T0079021.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139390 101141010 + Wbp1 protein_coding processed_transcript MGP_C3HHeJ_T0079022.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101139771 101141015 + Wbp1 protein_coding retained_intron MGP_C3HHeJ_T0079023.1 MGP_C3HHeJ_G0030810.1 mouse_genomes_project 6 101140441 101141100 + MGP_C3HHeJ_P0079023 Wbp1 protein_coding protein_coding MGP_C3HHeJ_T0078808.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98695231 98712193 - MGP_C3HHeJ_P0078808 Cct7 protein_coding protein_coding MGP_C3HHeJ_T0078809.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98695424 98711655 - MGP_C3HHeJ_P0078809 Cct7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078810.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98695424 98711615 - MGP_C3HHeJ_P0078810 Cct7 protein_coding protein_coding MGP_C3HHeJ_T0078811.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98697618 98701555 - MGP_C3HHeJ_P0078811 Cct7 protein_coding protein_coding MGP_C3HHeJ_T0078812.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98697769 98701936 - Cct7 protein_coding retained_intron MGP_C3HHeJ_T0078813.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98698796 98702969 - Cct7 protein_coding retained_intron MGP_C3HHeJ_T0078814.1 MGP_C3HHeJ_G0030776.1 mouse_genomes_project 6 98707804 98711688 - Cct7 protein_coding retained_intron MGP_C3HHeJ_T0015467.1 MGP_C3HHeJ_G0013571.1 mouse_genomes_project 6 146410280 146410483 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011559.1 MGP_C3HHeJ_G0009692.1 mouse_genomes_project 6 56393899 56394216 + Gm27896 misc_RNA misc_RNA MGP_C3HHeJ_T0076402.1 MGP_C3HHeJ_G0030237.1 mouse_genomes_project 6 28186534 28208224 + MGP_C3HHeJ_P0076402 Cpa5 protein_coding protein_coding MGP_C3HHeJ_T0076403.1 MGP_C3HHeJ_G0030237.1 mouse_genomes_project 6 28186575 28207999 + MGP_C3HHeJ_P0076403 Cpa5 protein_coding protein_coding MGP_C3HHeJ_T0076404.1 MGP_C3HHeJ_G0030237.1 mouse_genomes_project 6 28187712 28208222 + MGP_C3HHeJ_P0076404 Cpa5 protein_coding protein_coding MGP_C3HHeJ_T0076405.1 MGP_C3HHeJ_G0030237.1 mouse_genomes_project 6 28188079 28207915 + MGP_C3HHeJ_P0076405 Cpa5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008438.1 MGP_C3HHeJ_G0006826.1 mouse_genomes_project 6 19076907 19082088 - Gm3289 lincRNA lincRNA MGP_C3HHeJ_T0098300.1 MGP_C3HHeJ_G0036512.1 mouse_genomes_project 6 142376013 142376180 - Gm25434 scaRNA scaRNA MGP_C3HHeJ_T0001930.1 MGP_C3HHeJ_G0001852.1 mouse_genomes_project 6 43480955 43482218 + TEC TEC MGP_C3HHeJ_T0008499.1 MGP_C3HHeJ_G0006865.1 mouse_genomes_project 6 47155519 47156780 - Gm44226 lincRNA lincRNA MGP_C3HHeJ_T0005047.1 MGP_C3HHeJ_G0004300.1 mouse_genomes_project 6 148014695 148035745 + Sox5os3 antisense antisense MGP_C3HHeJ_T0005048.1 MGP_C3HHeJ_G0004300.1 mouse_genomes_project 6 148021602 148035495 + Sox5os3 antisense antisense MGP_C3HHeJ_T0098162.1 MGP_C3HHeJ_G0036374.1 mouse_genomes_project 6 71043562 71043662 + n-R5s165 rRNA rRNA MGP_C3HHeJ_T0077191.1 MGP_C3HHeJ_G0030435.1 mouse_genomes_project 6 50713072 50764658 - MGP_C3HHeJ_P0077191 Gm28308 protein_coding protein_coding MGP_C3HHeJ_T0008555.1 MGP_C3HHeJ_G0006910.1 mouse_genomes_project 6 70555930 70563762 - Gm26799 lincRNA lincRNA MGP_C3HHeJ_T0015078.1 MGP_C3HHeJ_G0013182.1 mouse_genomes_project 6 13916441 13918137 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015106.1 MGP_C3HHeJ_G0013210.1 mouse_genomes_project 6 27285091 27285456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078146.1 MGP_C3HHeJ_G0030637.1 mouse_genomes_project 6 79739897 79981140 - MGP_C3HHeJ_P0078146 Chl1 protein_coding protein_coding MGP_C3HHeJ_T0078147.1 MGP_C3HHeJ_G0030637.1 mouse_genomes_project 6 79760366 79980658 - MGP_C3HHeJ_P0078147 Chl1 protein_coding protein_coding MGP_C3HHeJ_T0078148.1 MGP_C3HHeJ_G0030637.1 mouse_genomes_project 6 79763571 79789029 - MGP_C3HHeJ_P0078148 Chl1 protein_coding protein_coding MGP_C3HHeJ_T0078149.1 MGP_C3HHeJ_G0030637.1 mouse_genomes_project 6 79763928 79980552 - MGP_C3HHeJ_P0078149 Chl1 protein_coding protein_coding MGP_C3HHeJ_T0078150.1 MGP_C3HHeJ_G0030637.1 mouse_genomes_project 6 79821555 79980396 - MGP_C3HHeJ_P0078150 Chl1 protein_coding protein_coding MGP_C3HHeJ_T0078151.1 MGP_C3HHeJ_G0030637.1 mouse_genomes_project 6 79844991 79980764 - Chl1 protein_coding retained_intron MGP_C3HHeJ_T0002530.1 MGP_C3HHeJ_G0002440.1 mouse_genomes_project 6 39573610 39573660 + MGP_C3HHeJ_P0002530 Trbj2-1 TR_J_gene TR_J_gene MGP_C3HHeJ_T0015225.1 MGP_C3HHeJ_G0013329.1 mouse_genomes_project 6 72571860 72571992 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002060.1 MGP_C3HHeJ_G0001981.1 mouse_genomes_project 6 103838440 103841161 - TEC TEC MGP_C3HHeJ_T0008709.1 MGP_C3HHeJ_G0007027.1 mouse_genomes_project 6 153104859 153105732 + Gm21814 lincRNA lincRNA MGP_C3HHeJ_T0008710.1 MGP_C3HHeJ_G0007027.1 mouse_genomes_project 6 153104901 153122181 + Gm21814 lincRNA lincRNA MGP_C3HHeJ_T0008711.1 MGP_C3HHeJ_G0007027.1 mouse_genomes_project 6 153120697 153122346 + Gm21814 lincRNA lincRNA MGP_C3HHeJ_T0015278.1 MGP_C3HHeJ_G0013382.1 mouse_genomes_project 6 94095708 94096668 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077948.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69756402 69768903 - MGP_C3HHeJ_P0077948 Il17re protein_coding protein_coding MGP_C3HHeJ_T0077949.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69756404 69762593 - Il17re protein_coding retained_intron MGP_C3HHeJ_T0077950.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69756763 69768580 - MGP_C3HHeJ_P0077950 Il17re protein_coding protein_coding MGP_C3HHeJ_T0077951.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69756774 69768553 - MGP_C3HHeJ_P0077951 Il17re protein_coding protein_coding MGP_C3HHeJ_T0077952.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69757005 69768492 - MGP_C3HHeJ_P0077952 Il17re protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077953.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69757005 69768492 - MGP_C3HHeJ_P0077953 Il17re protein_coding protein_coding MGP_C3HHeJ_T0077954.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69757161 69760787 - Il17re protein_coding retained_intron MGP_C3HHeJ_T0077955.1 MGP_C3HHeJ_G0030603.1 mouse_genomes_project 6 69766512 69768626 - Il17re protein_coding retained_intron MGP_C3HHeJ_T0077664.1 MGP_C3HHeJ_G0030549.1 mouse_genomes_project 6 65146028 65176350 - MGP_C3HHeJ_P0077664 protein_coding protein_coding MGP_C3HHeJ_T0077665.1 MGP_C3HHeJ_G0030549.1 mouse_genomes_project 6 65146050 65168209 - MGP_C3HHeJ_P0077665 protein_coding protein_coding MGP_C3HHeJ_T0078071.1 MGP_C3HHeJ_G0030620.1 mouse_genomes_project 6 70782562 70798790 + MGP_C3HHeJ_P0078071 Oxtr protein_coding protein_coding MGP_C3HHeJ_T0078072.1 MGP_C3HHeJ_G0030620.1 mouse_genomes_project 6 70784111 70798786 + MGP_C3HHeJ_P0078072 Oxtr protein_coding protein_coding MGP_C3HHeJ_T0010701.1 MGP_C3HHeJ_G0008834.1 mouse_genomes_project 6 84595067 84595214 + miRNA miRNA MGP_C3HHeJ_T0002003.1 MGP_C3HHeJ_G0001924.1 mouse_genomes_project 6 88958450 88959454 - TEC TEC MGP_C3HHeJ_T0077585.1 MGP_C3HHeJ_G0030536.1 mouse_genomes_project 6 63609023 63678901 + MGP_C3HHeJ_P0077585 Adipor2 protein_coding protein_coding MGP_C3HHeJ_T0077586.1 MGP_C3HHeJ_G0030536.1 mouse_genomes_project 6 63609037 63674364 + Adipor2 protein_coding retained_intron MGP_C3HHeJ_T0077587.1 MGP_C3HHeJ_G0030536.1 mouse_genomes_project 6 63609252 63661892 + MGP_C3HHeJ_P0077587 Adipor2 protein_coding protein_coding MGP_C3HHeJ_T0077588.1 MGP_C3HHeJ_G0030536.1 mouse_genomes_project 6 63641781 63676586 + MGP_C3HHeJ_P0077588 Adipor2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077589.1 MGP_C3HHeJ_G0030536.1 mouse_genomes_project 6 63643344 63678284 + MGP_C3HHeJ_P0077589 Adipor2 protein_coding protein_coding MGP_C3HHeJ_T0018084.1 MGP_C3HHeJ_G0015408.1 mouse_genomes_project 6 126952535 126964393 + Gm44597 processed_transcript retained_intron MGP_C3HHeJ_T0018085.1 MGP_C3HHeJ_G0015408.1 mouse_genomes_project 6 126952564 126964348 + Gm44597 processed_transcript retained_intron MGP_C3HHeJ_T0080465.1 MGP_C3HHeJ_G0031162.1 mouse_genomes_project 6 145335138 145437960 - MGP_C3HHeJ_P0080465 Slco1a6 protein_coding protein_coding MGP_C3HHeJ_T0080466.1 MGP_C3HHeJ_G0031162.1 mouse_genomes_project 6 145369403 145437956 - Slco1a6 protein_coding retained_intron MGP_C3HHeJ_T0080467.1 MGP_C3HHeJ_G0031162.1 mouse_genomes_project 6 145420445 145459735 - MGP_C3HHeJ_P0080467 Slco1a6 protein_coding protein_coding MGP_C3HHeJ_T0077188.1 MGP_C3HHeJ_G0030433.1 mouse_genomes_project 6 50705270 50708001 - MGP_C3HHeJ_P0077188 Hoxa1 protein_coding protein_coding MGP_C3HHeJ_T0077189.1 MGP_C3HHeJ_G0030433.1 mouse_genomes_project 6 50705275 50708001 - MGP_C3HHeJ_P0077189 Hoxa1 protein_coding protein_coding MGP_C3HHeJ_T0008549.1 MGP_C3HHeJ_G0006904.1 mouse_genomes_project 6 65671521 65674532 + Gm4640 lincRNA lincRNA MGP_C3HHeJ_T0102125.1 MGP_C3HHeJ_G0040089.1 mouse_genomes_project 6 132829217 132853464 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0077080.1 MGP_C3HHeJ_G0030409.1 mouse_genomes_project 6 47279036 47316167 + MGP_C3HHeJ_P0077080 Aoc1 protein_coding protein_coding MGP_C3HHeJ_T0077081.1 MGP_C3HHeJ_G0030409.1 mouse_genomes_project 6 47304922 47319479 + MGP_C3HHeJ_P0077081 Aoc1 protein_coding protein_coding MGP_C3HHeJ_T0077082.1 MGP_C3HHeJ_G0030409.1 mouse_genomes_project 6 47315276 47319478 + MGP_C3HHeJ_P0077082 Aoc1 protein_coding protein_coding MGP_C3HHeJ_T0077083.1 MGP_C3HHeJ_G0030409.1 mouse_genomes_project 6 47315276 47319478 + MGP_C3HHeJ_P0077083 Aoc1 protein_coding protein_coding MGP_C3HHeJ_T0077084.1 MGP_C3HHeJ_G0030409.1 mouse_genomes_project 6 47317645 47318942 + Aoc1 protein_coding retained_intron MGP_C3HHeJ_T0002148.1 MGP_C3HHeJ_G0002069.1 mouse_genomes_project 6 151796283 151799794 - TEC TEC MGP_C3HHeJ_T0077501.1 MGP_C3HHeJ_G0030524.1 mouse_genomes_project 6 62466906 62471775 + MGP_C3HHeJ_P0077501 Cecr6 protein_coding protein_coding MGP_C3HHeJ_T0075969.1 MGP_C3HHeJ_G0030158.1 mouse_genomes_project 6 10799749 10803533 - MGP_C3HHeJ_P0075969 2610001J05Rik protein_coding protein_coding MGP_C3HHeJ_T0075970.1 MGP_C3HHeJ_G0030158.1 mouse_genomes_project 6 10801814 10803481 - MGP_C3HHeJ_P0075970 2610001J05Rik protein_coding protein_coding MGP_C3HHeJ_T0075971.1 MGP_C3HHeJ_G0030158.1 mouse_genomes_project 6 10801874 10803480 - MGP_C3HHeJ_P0075971 2610001J05Rik protein_coding protein_coding MGP_C3HHeJ_T0075972.1 MGP_C3HHeJ_G0030158.1 mouse_genomes_project 6 10802015 10803480 - MGP_C3HHeJ_P0075972 2610001J05Rik protein_coding protein_coding MGP_C3HHeJ_T0000189.1 MGP_C3HHeJ_G0000144.1 mouse_genomes_project 6 116721322 116722048 - MGP_C3HHeJ_P0000189 Igkv2-112 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000190.1 MGP_C3HHeJ_G0000144.1 mouse_genomes_project 6 116721322 116722048 - MGP_C3HHeJ_P0000190 Igkv2-112 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015208.1 MGP_C3HHeJ_G0013312.1 mouse_genomes_project 6 67373844 67374237 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015290.1 MGP_C3HHeJ_G0013394.1 mouse_genomes_project 6 99107969 99108111 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076144.1 MGP_C3HHeJ_G0030188.1 mouse_genomes_project 6 21390421 21473016 - MGP_C3HHeJ_P0076144 Slc13a1 protein_coding protein_coding MGP_C3HHeJ_T0076145.1 MGP_C3HHeJ_G0030188.1 mouse_genomes_project 6 21390688 21411363 - Slc13a1 protein_coding processed_transcript MGP_C3HHeJ_T0076146.1 MGP_C3HHeJ_G0030188.1 mouse_genomes_project 6 21408080 21411360 - Slc13a1 protein_coding retained_intron MGP_C3HHeJ_T0076147.1 MGP_C3HHeJ_G0030188.1 mouse_genomes_project 6 21437635 21473014 - Slc13a1 protein_coding retained_intron MGP_C3HHeJ_T0015334.1 MGP_C3HHeJ_G0013438.1 mouse_genomes_project 6 116532596 116534107 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077006.1 MGP_C3HHeJ_G0030390.1 mouse_genomes_project 6 46941934 46959151 + MGP_C3HHeJ_P0077006 Lrrc61 protein_coding protein_coding MGP_C3HHeJ_T0077007.1 MGP_C3HHeJ_G0030390.1 mouse_genomes_project 6 46941937 46956801 + MGP_C3HHeJ_P0077007 Lrrc61 protein_coding protein_coding MGP_C3HHeJ_T0077008.1 MGP_C3HHeJ_G0030390.1 mouse_genomes_project 6 46941937 46956821 + MGP_C3HHeJ_P0077008 Lrrc61 protein_coding protein_coding MGP_C3HHeJ_T0077009.1 MGP_C3HHeJ_G0030390.1 mouse_genomes_project 6 46941943 46959150 + MGP_C3HHeJ_P0077009 Lrrc61 protein_coding protein_coding MGP_C3HHeJ_T0077010.1 MGP_C3HHeJ_G0030390.1 mouse_genomes_project 6 46941949 46956696 + Lrrc61 protein_coding processed_transcript MGP_C3HHeJ_T0077011.1 MGP_C3HHeJ_G0030390.1 mouse_genomes_project 6 46941967 46957004 + MGP_C3HHeJ_P0077011 Lrrc61 protein_coding protein_coding MGP_C3HHeJ_T0010717.1 MGP_C3HHeJ_G0008850.1 mouse_genomes_project 6 114682323 114682433 + Gm23694 miRNA miRNA MGP_C3HHeJ_T0011570.1 MGP_C3HHeJ_G0009703.1 mouse_genomes_project 6 100537882 100538348 - Gm27631 misc_RNA misc_RNA MGP_C3HHeJ_T0005049.1 MGP_C3HHeJ_G0004301.1 mouse_genomes_project 6 148065017 148104862 + Sox5os4 antisense antisense MGP_C3HHeJ_T0015397.1 MGP_C3HHeJ_G0013501.1 mouse_genomes_project 6 124797003 124797097 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102081.1 MGP_C3HHeJ_G0040046.1 mouse_genomes_project 6 41194067 41194383 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079897.1 MGP_C3HHeJ_G0031003.1 mouse_genomes_project 6 128098701 128165375 - MGP_C3HHeJ_P0079897 Ntf3 protein_coding protein_coding MGP_C3HHeJ_T0079898.1 MGP_C3HHeJ_G0031003.1 mouse_genomes_project 6 128098701 128163620 - MGP_C3HHeJ_P0079898 Ntf3 protein_coding protein_coding MGP_C3HHeJ_T0079899.1 MGP_C3HHeJ_G0031003.1 mouse_genomes_project 6 128098701 128165570 - MGP_C3HHeJ_P0079899 Ntf3 protein_coding protein_coding MGP_C3HHeJ_T0000156.1 MGP_C3HHeJ_G0000119.1 mouse_genomes_project 6 114946695 114947195 + MGP_C3HHeJ_P0000156 Igkv12-46 IG_V_gene IG_V_gene MGP_C3HHeJ_T0008626.1 MGP_C3HHeJ_G0006964.1 mouse_genomes_project 6 112301072 112305929 - Gm45050 lincRNA lincRNA MGP_C3HHeJ_T0008648.1 MGP_C3HHeJ_G0006985.1 mouse_genomes_project 6 129951727 129955363 - Gm42810 lincRNA lincRNA MGP_C3HHeJ_T0080048.1 MGP_C3HHeJ_G0031041.1 mouse_genomes_project 6 131287173 131302007 + MGP_C3HHeJ_P0080048 Klrb1f protein_coding protein_coding MGP_C3HHeJ_T0080049.1 MGP_C3HHeJ_G0031041.1 mouse_genomes_project 6 131287173 131302007 + MGP_C3HHeJ_P0080049 Klrb1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080050.1 MGP_C3HHeJ_G0031041.1 mouse_genomes_project 6 131287192 131301252 + MGP_C3HHeJ_P0080050 Klrb1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080051.1 MGP_C3HHeJ_G0031041.1 mouse_genomes_project 6 131287197 131296932 + Klrb1f protein_coding retained_intron MGP_C3HHeJ_T0080052.1 MGP_C3HHeJ_G0031041.1 mouse_genomes_project 6 131287199 131298005 + MGP_C3HHeJ_P0080052 Klrb1f protein_coding protein_coding MGP_C3HHeJ_T0080053.1 MGP_C3HHeJ_G0031041.1 mouse_genomes_project 6 131293571 131298011 + Klrb1f protein_coding processed_transcript MGP_C3HHeJ_T0015088.1 MGP_C3HHeJ_G0013192.1 mouse_genomes_project 6 16897883 16898849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075874.1 MGP_C3HHeJ_G0030137.1 mouse_genomes_project 6 3692573 3696855 - MGP_C3HHeJ_P0075874 Dlx5 protein_coding protein_coding MGP_C3HHeJ_T0075875.1 MGP_C3HHeJ_G0030137.1 mouse_genomes_project 6 3692573 3696838 - MGP_C3HHeJ_P0075875 Dlx5 protein_coding protein_coding MGP_C3HHeJ_T0075876.1 MGP_C3HHeJ_G0030137.1 mouse_genomes_project 6 3695462 3696852 - Dlx5 protein_coding retained_intron MGP_C3HHeJ_T0015170.1 MGP_C3HHeJ_G0013274.1 mouse_genomes_project 6 50917939 50918220 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099551.1 MGP_C3HHeJ_G0037745.1 mouse_genomes_project 6 132569428 132569503 + Gm24676 snRNA snRNA MGP_C3HHeJ_T0102133.1 MGP_C3HHeJ_G0040097.1 mouse_genomes_project 6 135588991 135589984 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015070.1 MGP_C3HHeJ_G0013174.1 mouse_genomes_project 6 10390948 10391445 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076905.1 MGP_C3HHeJ_G0030371.1 mouse_genomes_project 6 41333672 41334731 + MGP_C3HHeJ_P0076905 Olfr47 protein_coding protein_coding MGP_C3HHeJ_T0015161.1 MGP_C3HHeJ_G0013265.1 mouse_genomes_project 6 47994921 47995667 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008458.1 MGP_C3HHeJ_G0006839.1 mouse_genomes_project 6 28994971 29028951 - Mkln1os lincRNA lincRNA MGP_C3HHeJ_T0008460.1 MGP_C3HHeJ_G0006839.1 mouse_genomes_project 6 29011807 29028931 - Mkln1os lincRNA lincRNA MGP_C3HHeJ_T0008461.1 MGP_C3HHeJ_G0006839.1 mouse_genomes_project 6 29013454 29028937 - Mkln1os lincRNA lincRNA MGP_C3HHeJ_T0015429.1 MGP_C3HHeJ_G0013533.1 mouse_genomes_project 6 132572247 132572359 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015463.1 MGP_C3HHeJ_G0013567.1 mouse_genomes_project 6 144242266 144242383 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010679.1 MGP_C3HHeJ_G0008812.1 mouse_genomes_project 6 46805939 46806013 + Gm24325 miRNA miRNA MGP_C3HHeJ_T0008552.1 MGP_C3HHeJ_G0006907.1 mouse_genomes_project 6 69483967 69484891 - Gm44053 lincRNA lincRNA MGP_C3HHeJ_T0078143.1 MGP_C3HHeJ_G0030636.1 mouse_genomes_project 6 78603281 78928124 - MGP_C3HHeJ_P0078143 Cntn6 protein_coding protein_coding MGP_C3HHeJ_T0078144.1 MGP_C3HHeJ_G0030636.1 mouse_genomes_project 6 78825834 78983476 - MGP_C3HHeJ_P0078144 Cntn6 protein_coding protein_coding MGP_C3HHeJ_T0078145.1 MGP_C3HHeJ_G0030636.1 mouse_genomes_project 6 78898963 78983212 - Cntn6 protein_coding retained_intron MGP_C3HHeJ_T0015133.1 MGP_C3HHeJ_G0013237.1 mouse_genomes_project 6 40758764 40759196 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076603.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35685249 35738198 + Trim24 protein_coding retained_intron MGP_C3HHeJ_T0076604.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35685249 35767052 + Trim24 protein_coding retained_intron MGP_C3HHeJ_T0076605.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35685249 35787368 + MGP_C3HHeJ_P0076605 Trim24 protein_coding protein_coding MGP_C3HHeJ_T0076606.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35685249 35787368 + MGP_C3HHeJ_P0076606 Trim24 protein_coding protein_coding MGP_C3HHeJ_T0076607.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35690768 35750381 + Trim24 protein_coding processed_transcript MGP_C3HHeJ_T0076608.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35716549 35787004 + MGP_C3HHeJ_P0076608 Trim24 protein_coding protein_coding MGP_C3HHeJ_T0076609.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35731284 35745749 + Trim24 protein_coding retained_intron MGP_C3HHeJ_T0076610.1 MGP_C3HHeJ_G0030274.1 mouse_genomes_project 6 35768811 35773893 + Trim24 protein_coding retained_intron MGP_C3HHeJ_T0002098.1 MGP_C3HHeJ_G0002019.1 mouse_genomes_project 6 124478763 124481131 + TEC TEC MGP_C3HHeJ_T0076181.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 24681600 25566044 - MGP_C3HHeJ_P0076181 Grm8 protein_coding protein_coding MGP_C3HHeJ_T0076182.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 24681609 25557618 - MGP_C3HHeJ_P0076182 Grm8 protein_coding protein_coding MGP_C3HHeJ_T0076183.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 24682093 25557688 - MGP_C3HHeJ_P0076183 Grm8 protein_coding protein_coding MGP_C3HHeJ_T0076184.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 25033674 25566523 - MGP_C3HHeJ_P0076184 Grm8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076185.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 25176080 25564818 - MGP_C3HHeJ_P0076185 Grm8 protein_coding protein_coding MGP_C3HHeJ_T0076186.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 25357587 25566677 - Grm8 protein_coding processed_transcript MGP_C3HHeJ_T0076187.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 25557556 25564622 - MGP_C3HHeJ_P0076187 Grm8 protein_coding protein_coding MGP_C3HHeJ_T0076188.1 MGP_C3HHeJ_G0030201.1 mouse_genomes_project 6 25563520 25565884 - Grm8 protein_coding processed_transcript MGP_C3HHeJ_T0008515.1 MGP_C3HHeJ_G0006877.1 mouse_genomes_project 6 50229444 50246221 - Gm44191 lincRNA lincRNA MGP_C3HHeJ_T0001888.1 MGP_C3HHeJ_G0001810.1 mouse_genomes_project 6 12820914 12822627 + TEC TEC MGP_C3HHeJ_T0011565.1 MGP_C3HHeJ_G0009698.1 mouse_genomes_project 6 83741072 83741394 + Gm24248 misc_RNA misc_RNA MGP_C3HHeJ_T0008606.1 MGP_C3HHeJ_G0006949.1 mouse_genomes_project 6 98132540 98137507 - 4930553P18Rik lincRNA lincRNA MGP_C3HHeJ_T0000204.1 MGP_C3HHeJ_G0000155.1 mouse_genomes_project 6 117280111 117280614 + MGP_C3HHeJ_P0000204 IG_V_gene IG_V_gene MGP_C3HHeJ_T0077152.1 MGP_C3HHeJ_G0030426.1 mouse_genomes_project 6 49062898 49086321 - MGP_C3HHeJ_P0077152 4921507P07Rik protein_coding protein_coding MGP_C3HHeJ_T0102070.1 MGP_C3HHeJ_G0040035.1 mouse_genomes_project 6 32078863 32079842 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079480.1 MGP_C3HHeJ_G0030913.1 mouse_genomes_project 6 122652817 122678404 + MGP_C3HHeJ_P0079480 Usp18 protein_coding protein_coding MGP_C3HHeJ_T0079481.1 MGP_C3HHeJ_G0030913.1 mouse_genomes_project 6 122661394 122663352 + Usp18 protein_coding retained_intron MGP_C3HHeJ_T0079482.1 MGP_C3HHeJ_G0030913.1 mouse_genomes_project 6 122668967 122670704 + Usp18 protein_coding retained_intron MGP_C3HHeJ_T0079483.1 MGP_C3HHeJ_G0030913.1 mouse_genomes_project 6 122676069 122676985 + MGP_C3HHeJ_P0079483 Usp18 protein_coding protein_coding MGP_C3HHeJ_T0008627.1 MGP_C3HHeJ_G0006965.1 mouse_genomes_project 6 112461426 112489377 + lincRNA lincRNA MGP_C3HHeJ_T0077123.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584353 48587812 + Mpp6 protein_coding retained_intron MGP_C3HHeJ_T0077124.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584353 48674366 + MGP_C3HHeJ_P0077124 Mpp6 protein_coding protein_coding MGP_C3HHeJ_T0077125.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584353 48674718 + MGP_C3HHeJ_P0077125 Mpp6 protein_coding protein_coding MGP_C3HHeJ_T0077126.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584353 48674377 + MGP_C3HHeJ_P0077126 Mpp6 protein_coding protein_coding MGP_C3HHeJ_T0077127.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584385 48674203 + MGP_C3HHeJ_P0077127 Mpp6 protein_coding protein_coding MGP_C3HHeJ_T0077128.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584409 48637317 + MGP_C3HHeJ_P0077128 Mpp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077129.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48584862 48655683 + MGP_C3HHeJ_P0077129 Mpp6 protein_coding protein_coding MGP_C3HHeJ_T0077130.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48655369 48671622 + Mpp6 protein_coding processed_transcript MGP_C3HHeJ_T0077133.1 MGP_C3HHeJ_G0030421.1 mouse_genomes_project 6 48669479 48674106 + Mpp6 protein_coding retained_intron MGP_C3HHeJ_T0101258.1 MGP_C3HHeJ_G0039374.1 mouse_genomes_project 6 130300099 130301279 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0102075.1 MGP_C3HHeJ_G0040040.1 mouse_genomes_project 6 39536533 39538064 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002061.1 MGP_C3HHeJ_G0001982.1 mouse_genomes_project 6 103908419 103910896 - TEC TEC MGP_C3HHeJ_T0015250.1 MGP_C3HHeJ_G0013354.1 mouse_genomes_project 6 82732118 82747681 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001957.1 MGP_C3HHeJ_G0001879.1 mouse_genomes_project 6 55624920 55625592 - TEC TEC MGP_C3HHeJ_T0015430.1 MGP_C3HHeJ_G0013534.1 mouse_genomes_project 6 132934213 132936922 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015455.1 MGP_C3HHeJ_G0013559.1 mouse_genomes_project 6 142026176 142026776 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077412.1 MGP_C3HHeJ_G0030500.1 mouse_genomes_project 6 56553284 56653782 - MGP_C3HHeJ_P0077412 Vopp1 protein_coding protein_coding MGP_C3HHeJ_T0077413.1 MGP_C3HHeJ_G0030500.1 mouse_genomes_project 6 56578982 56653626 - MGP_C3HHeJ_P0077413 Vopp1 protein_coding protein_coding MGP_C3HHeJ_T0077414.1 MGP_C3HHeJ_G0030500.1 mouse_genomes_project 6 56581289 56653796 - MGP_C3HHeJ_P0077414 Vopp1 protein_coding protein_coding MGP_C3HHeJ_T0077415.1 MGP_C3HHeJ_G0030500.1 mouse_genomes_project 6 56585073 56653800 - MGP_C3HHeJ_P0077415 Vopp1 protein_coding protein_coding MGP_C3HHeJ_T0077416.1 MGP_C3HHeJ_G0030500.1 mouse_genomes_project 6 56589293 56653286 - Vopp1 protein_coding processed_transcript MGP_C3HHeJ_T0005042.1 MGP_C3HHeJ_G0004295.1 mouse_genomes_project 6 144486715 144490503 - Gm28523 antisense antisense MGP_C3HHeJ_T0080056.1 MGP_C3HHeJ_G0031044.1 mouse_genomes_project 6 131521774 131529888 - MGP_C3HHeJ_P0080056 Cd69 protein_coding protein_coding MGP_C3HHeJ_T0080057.1 MGP_C3HHeJ_G0031044.1 mouse_genomes_project 6 131522708 131529818 - MGP_C3HHeJ_P0080057 Cd69 protein_coding protein_coding MGP_C3HHeJ_T0080058.1 MGP_C3HHeJ_G0031044.1 mouse_genomes_project 6 131523900 131529821 - Cd69 protein_coding retained_intron MGP_C3HHeJ_T0080059.1 MGP_C3HHeJ_G0031044.1 mouse_genomes_project 6 131524851 131529821 - Cd69 protein_coding retained_intron MGP_C3HHeJ_T0080060.1 MGP_C3HHeJ_G0031044.1 mouse_genomes_project 6 131525616 131529821 - Cd69 protein_coding retained_intron MGP_C3HHeJ_T0004904.1 MGP_C3HHeJ_G0004201.1 mouse_genomes_project 6 69493950 69495101 - Gm26982 antisense antisense MGP_C3HHeJ_T0004965.1 MGP_C3HHeJ_G0004237.1 mouse_genomes_project 6 98139958 98184844 - Gm19265 antisense antisense MGP_C3HHeJ_T0079531.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124071665 124090544 - MGP_C3HHeJ_P0079531 Rimklb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079532.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124071667 124077100 - Rimklb protein_coding processed_transcript MGP_C3HHeJ_T0079533.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124077468 124110867 - MGP_C3HHeJ_P0079533 Rimklb protein_coding protein_coding MGP_C3HHeJ_T0079534.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124078627 124090492 - MGP_C3HHeJ_P0079534 Rimklb protein_coding protein_coding MGP_C3HHeJ_T0079535.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124083276 124096514 - Rimklb protein_coding processed_transcript MGP_C3HHeJ_T0079536.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124088122 124110801 - MGP_C3HHeJ_P0079536 Rimklb protein_coding protein_coding MGP_C3HHeJ_T0079537.1 MGP_C3HHeJ_G0030923.1 mouse_genomes_project 6 124096497 124123131 - MGP_C3HHeJ_P0079537 Rimklb protein_coding protein_coding MGP_C3HHeJ_T0010726.1 MGP_C3HHeJ_G0008859.1 mouse_genomes_project 6 129863019 129863079 - Mir7233 miRNA miRNA MGP_C3HHeJ_T0078263.1 MGP_C3HHeJ_G0030662.1 mouse_genomes_project 6 88611173 88625454 - MGP_C3HHeJ_P0078263 Kbtbd8 protein_coding protein_coding MGP_C3HHeJ_T0078264.1 MGP_C3HHeJ_G0030662.1 mouse_genomes_project 6 88620380 88626173 - MGP_C3HHeJ_P0078264 Kbtbd8 protein_coding protein_coding MGP_C3HHeJ_T0078265.1 MGP_C3HHeJ_G0030662.1 mouse_genomes_project 6 88620473 88625429 - Kbtbd8 protein_coding processed_transcript MGP_C3HHeJ_T0097914.1 MGP_C3HHeJ_G0036126.1 mouse_genomes_project 6 3550061 3551239 - pseudogene pseudogene MGP_C3HHeJ_T0015372.1 MGP_C3HHeJ_G0013476.1 mouse_genomes_project 6 119947537 119947888 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000259.1 MGP_C3HHeJ_G0000209.1 mouse_genomes_project 6 114128401 114128994 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0080277.1 MGP_C3HHeJ_G0031125.1 mouse_genomes_project 6 139398559 139413911 - MGP_C3HHeJ_P0080277 E330021D16Rik protein_coding protein_coding MGP_C3HHeJ_T0080278.1 MGP_C3HHeJ_G0031125.1 mouse_genomes_project 6 139398947 139400063 - MGP_C3HHeJ_P0080278 E330021D16Rik protein_coding protein_coding MGP_C3HHeJ_T0080279.1 MGP_C3HHeJ_G0031125.1 mouse_genomes_project 6 139399727 139413906 - MGP_C3HHeJ_P0080279 E330021D16Rik protein_coding protein_coding MGP_C3HHeJ_T0077209.1 MGP_C3HHeJ_G0030442.1 mouse_genomes_project 6 50782484 50786227 - MGP_C3HHeJ_P0077209 Hoxa10 protein_coding protein_coding MGP_C3HHeJ_T0077210.1 MGP_C3HHeJ_G0030442.1 mouse_genomes_project 6 50782486 50784612 - Hoxa10 protein_coding processed_transcript MGP_C3HHeJ_T0077211.1 MGP_C3HHeJ_G0030442.1 mouse_genomes_project 6 50783209 50792138 - MGP_C3HHeJ_P0077211 Hoxa10 protein_coding protein_coding MGP_C3HHeJ_T0077212.1 MGP_C3HHeJ_G0030442.1 mouse_genomes_project 6 50783369 50792079 - Hoxa10 protein_coding processed_transcript MGP_C3HHeJ_T0078577.1 MGP_C3HHeJ_G0030727.1 mouse_genomes_project 6 96073411 96074628 + MGP_C3HHeJ_P0078577 H1fx protein_coding protein_coding MGP_C3HHeJ_T0015182.1 MGP_C3HHeJ_G0013286.1 mouse_genomes_project 6 57372458 57372719 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015364.1 MGP_C3HHeJ_G0013468.1 mouse_genomes_project 6 119163208 119164784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079861.1 MGP_C3HHeJ_G0030995.1 mouse_genomes_project 6 127214255 127223747 - MGP_C3HHeJ_P0079861 Tuba3a protein_coding protein_coding MGP_C3HHeJ_T0076223.1 MGP_C3HHeJ_G0030209.1 mouse_genomes_project 6 26538983 26552610 + MGP_C3HHeJ_P0076223 Lep protein_coding protein_coding MGP_C3HHeJ_T0076224.1 MGP_C3HHeJ_G0030209.1 mouse_genomes_project 6 26544212 26549722 + MGP_C3HHeJ_P0076224 Lep protein_coding protein_coding MGP_C3HHeJ_T0098168.1 MGP_C3HHeJ_G0036380.1 mouse_genomes_project 6 143357156 143357267 - Gm24174 rRNA rRNA MGP_C3HHeJ_T0005044.1 MGP_C3HHeJ_G0004297.1 mouse_genomes_project 6 146479783 146499810 - 1700126G02Rik antisense antisense MGP_C3HHeJ_T0008511.1 MGP_C3HHeJ_G0006874.1 mouse_genomes_project 6 49893613 49906764 + Gm6559 lincRNA lincRNA MGP_C3HHeJ_T0077039.1 MGP_C3HHeJ_G0030399.1 mouse_genomes_project 6 47067641 47070158 + MGP_C3HHeJ_P0077039 Gimap9 protein_coding protein_coding MGP_C3HHeJ_T0077040.1 MGP_C3HHeJ_G0030399.1 mouse_genomes_project 6 47068969 47070571 + MGP_C3HHeJ_P0077040 Gimap9 protein_coding protein_coding MGP_C3HHeJ_T0102136.1 MGP_C3HHeJ_G0040100.1 mouse_genomes_project 6 135685900 135686829 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079129.1 MGP_C3HHeJ_G0030835.1 mouse_genomes_project 6 105893955 105896904 - MGP_C3HHeJ_P0079129 Reg2 protein_coding protein_coding MGP_C3HHeJ_T0002005.1 MGP_C3HHeJ_G0001926.1 mouse_genomes_project 6 90590881 90593363 - TEC TEC MGP_C3HHeJ_T0079029.1 MGP_C3HHeJ_G0030814.1 mouse_genomes_project 6 101152837 101159374 - MGP_C3HHeJ_P0079029 Ccdc142 protein_coding protein_coding MGP_C3HHeJ_T0079030.1 MGP_C3HHeJ_G0030814.1 mouse_genomes_project 6 101153397 101154131 - Ccdc142 protein_coding retained_intron MGP_C3HHeJ_T0079031.1 MGP_C3HHeJ_G0030814.1 mouse_genomes_project 6 101157120 101159317 - Ccdc142 protein_coding retained_intron MGP_C3HHeJ_T0079904.1 MGP_C3HHeJ_G0031006.1 mouse_genomes_project 6 128730800 128762748 - MGP_C3HHeJ_P0079904 Kcna6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079905.1 MGP_C3HHeJ_G0031006.1 mouse_genomes_project 6 128730802 128758897 - Kcna6 protein_coding processed_transcript MGP_C3HHeJ_T0079906.1 MGP_C3HHeJ_G0031006.1 mouse_genomes_project 6 128730803 128762760 - MGP_C3HHeJ_P0079906 Kcna6 protein_coding protein_coding MGP_C3HHeJ_T0079907.1 MGP_C3HHeJ_G0031006.1 mouse_genomes_project 6 128758773 128762237 - MGP_C3HHeJ_P0079907 Kcna6 protein_coding protein_coding MGP_C3HHeJ_T0010677.1 MGP_C3HHeJ_G0008810.1 mouse_genomes_project 6 46132640 46132717 - Mir704 miRNA miRNA MGP_C3HHeJ_T0015213.1 MGP_C3HHeJ_G0013317.1 mouse_genomes_project 6 68441447 68445855 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077424.1 MGP_C3HHeJ_G0030506.1 mouse_genomes_project 6 56835173 56836193 - MGP_C3HHeJ_P0077424 Vmn1r26 protein_coding protein_coding MGP_C3HHeJ_T0015295.1 MGP_C3HHeJ_G0013399.1 mouse_genomes_project 6 100396274 100397040 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008465.1 MGP_C3HHeJ_G0006843.1 mouse_genomes_project 6 29291518 29302487 + lincRNA lincRNA MGP_C3HHeJ_T0076864.1 MGP_C3HHeJ_G0030348.1 mouse_genomes_project 6 40466300 40467230 + MGP_C3HHeJ_P0076864 Tas2r126 protein_coding protein_coding MGP_C3HHeJ_T0002622.1 MGP_C3HHeJ_G0002515.1 mouse_genomes_project 6 39177974 39178679 + MGP_C3HHeJ_P0002622 Trbv20 TR_V_gene TR_V_gene MGP_C3HHeJ_T0015308.1 MGP_C3HHeJ_G0013412.1 mouse_genomes_project 6 106229062 106230082 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076650.1 MGP_C3HHeJ_G0030283.1 mouse_genomes_project 6 36382692 36388639 + Fmc1 protein_coding processed_transcript MGP_C3HHeJ_T0076651.1 MGP_C3HHeJ_G0030283.1 mouse_genomes_project 6 36384013 36388640 + MGP_C3HHeJ_P0076651 Fmc1 protein_coding protein_coding MGP_C3HHeJ_T0077497.1 MGP_C3HHeJ_G0030523.1 mouse_genomes_project 6 62426672 62448763 + MGP_C3HHeJ_P0077497 Cecr5 protein_coding protein_coding MGP_C3HHeJ_T0077498.1 MGP_C3HHeJ_G0030523.1 mouse_genomes_project 6 62426687 62438121 + Cecr5 protein_coding retained_intron MGP_C3HHeJ_T0077499.1 MGP_C3HHeJ_G0030523.1 mouse_genomes_project 6 62426689 62428024 + Cecr5 protein_coding retained_intron MGP_C3HHeJ_T0077500.1 MGP_C3HHeJ_G0030523.1 mouse_genomes_project 6 62426701 62437242 + Cecr5 protein_coding retained_intron MGP_C3HHeJ_T0079097.1 MGP_C3HHeJ_G0030827.1 mouse_genomes_project 6 101739244 101907633 - MGP_C3HHeJ_P0079097 Tacr1 protein_coding protein_coding MGP_C3HHeJ_T0079098.1 MGP_C3HHeJ_G0030827.1 mouse_genomes_project 6 101739249 101907945 - MGP_C3HHeJ_P0079098 Tacr1 protein_coding protein_coding MGP_C3HHeJ_T0079099.1 MGP_C3HHeJ_G0030827.1 mouse_genomes_project 6 101905055 101908086 - Tacr1 protein_coding retained_intron MGP_C3HHeJ_T0001994.1 MGP_C3HHeJ_G0001915.1 mouse_genomes_project 6 82670152 82670759 + TEC TEC MGP_C3HHeJ_T0076836.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313406 40341378 + MGP_C3HHeJ_P0076836 Clcn1 protein_coding protein_coding MGP_C3HHeJ_T0076837.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313488 40340900 + MGP_C3HHeJ_P0076837 Clcn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076838.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313577 40340951 + MGP_C3HHeJ_P0076838 Clcn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076839.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313577 40340900 + MGP_C3HHeJ_P0076839 Clcn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076840.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313577 40340900 + MGP_C3HHeJ_P0076840 Clcn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076841.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313577 40340900 + MGP_C3HHeJ_P0076841 Clcn1 protein_coding protein_coding MGP_C3HHeJ_T0076842.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40313587 40340679 + MGP_C3HHeJ_P0076842 Clcn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076843.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40325621 40342478 + Clcn1 protein_coding processed_transcript MGP_C3HHeJ_T0076844.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40336866 40339786 + MGP_C3HHeJ_P0076844 Clcn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076845.1 MGP_C3HHeJ_G0030342.1 mouse_genomes_project 6 40339213 40340066 + Clcn1 protein_coding retained_intron MGP_C3HHeJ_T0079645.1 MGP_C3HHeJ_G0030961.1 mouse_genomes_project 6 126602405 126606734 - Emg1 protein_coding retained_intron MGP_C3HHeJ_T0079646.1 MGP_C3HHeJ_G0030961.1 mouse_genomes_project 6 126602701 126610499 - MGP_C3HHeJ_P0079646 Emg1 protein_coding protein_coding MGP_C3HHeJ_T0079647.1 MGP_C3HHeJ_G0030961.1 mouse_genomes_project 6 126602702 126603980 - Emg1 protein_coding processed_transcript MGP_C3HHeJ_T0079648.1 MGP_C3HHeJ_G0030961.1 mouse_genomes_project 6 126602778 126610390 - Emg1 protein_coding retained_intron MGP_C3HHeJ_T0079649.1 MGP_C3HHeJ_G0030961.1 mouse_genomes_project 6 126603271 126610462 - Emg1 protein_coding retained_intron MGP_C3HHeJ_T0079650.1 MGP_C3HHeJ_G0030961.1 mouse_genomes_project 6 126603480 126610378 - MGP_C3HHeJ_P0079650 Emg1 protein_coding protein_coding MGP_C3HHeJ_T0002143.1 MGP_C3HHeJ_G0002064.1 mouse_genomes_project 6 149648796 149651145 - TEC TEC MGP_C3HHeJ_T0008590.1 MGP_C3HHeJ_G0006937.1 mouse_genomes_project 6 94771744 94818198 + lincRNA lincRNA MGP_C3HHeJ_T0001975.1 MGP_C3HHeJ_G0001896.1 mouse_genomes_project 6 69535169 69537657 + TEC TEC MGP_C3HHeJ_T0000271.1 MGP_C3HHeJ_G0000221.1 mouse_genomes_project 6 115031444 115031745 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015419.1 MGP_C3HHeJ_G0013523.1 mouse_genomes_project 6 130550050 130551365 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008689.1 MGP_C3HHeJ_G0007011.1 mouse_genomes_project 6 148621218 148622539 + Gm15706 lincRNA lincRNA MGP_C3HHeJ_T0010723.1 MGP_C3HHeJ_G0008856.1 mouse_genomes_project 6 127011686 127011749 + Mir7045 miRNA miRNA MGP_C3HHeJ_T0077730.1 MGP_C3HHeJ_G0030564.1 mouse_genomes_project 6 66802923 66845821 - MGP_C3HHeJ_P0077730 Zfand4 protein_coding protein_coding MGP_C3HHeJ_T0018055.1 MGP_C3HHeJ_G0015397.1 mouse_genomes_project 6 66793377 66797305 + Gm44957 processed_transcript bidirectional_promoter_lncRNA MGP_C3HHeJ_T0018056.1 MGP_C3HHeJ_G0015397.1 mouse_genomes_project 6 66793864 66797320 + Gm44957 processed_transcript retained_intron MGP_C3HHeJ_T0000181.1 MGP_C3HHeJ_G0000137.1 mouse_genomes_project 6 116399335 116399801 - MGP_C3HHeJ_P0000181 Igkv14-100 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000182.1 MGP_C3HHeJ_G0000137.1 mouse_genomes_project 6 116399335 116399801 - MGP_C3HHeJ_P0000182 Igkv14-100 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002101.1 MGP_C3HHeJ_G0002022.1 mouse_genomes_project 6 126998370 126998963 + TEC TEC MGP_C3HHeJ_T0010703.1 MGP_C3HHeJ_G0008836.1 mouse_genomes_project 6 89152504 89152556 + Mir7041 miRNA miRNA MGP_C3HHeJ_T0015177.1 MGP_C3HHeJ_G0013281.1 mouse_genomes_project 6 56920993 56922165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004839.1 MGP_C3HHeJ_G0004148.1 mouse_genomes_project 6 14858947 14859548 - Gm26738 antisense antisense MGP_C3HHeJ_T0077279.1 MGP_C3HHeJ_G0030455.1 mouse_genomes_project 6 53124904 53133091 - MGP_C3HHeJ_P0077279 Scrn1 protein_coding protein_coding MGP_C3HHeJ_T0077280.1 MGP_C3HHeJ_G0030455.1 mouse_genomes_project 6 53129629 53192484 - MGP_C3HHeJ_P0077280 Scrn1 protein_coding protein_coding MGP_C3HHeJ_T0077281.1 MGP_C3HHeJ_G0030455.1 mouse_genomes_project 6 53130004 53145500 - MGP_C3HHeJ_P0077281 Scrn1 protein_coding protein_coding MGP_C3HHeJ_T0077282.1 MGP_C3HHeJ_G0030455.1 mouse_genomes_project 6 53132837 53138547 - Scrn1 protein_coding retained_intron MGP_C3HHeJ_T0077283.1 MGP_C3HHeJ_G0030455.1 mouse_genomes_project 6 53160578 53180468 - MGP_C3HHeJ_P0077283 Scrn1 protein_coding protein_coding MGP_C3HHeJ_T0077284.1 MGP_C3HHeJ_G0030455.1 mouse_genomes_project 6 53177730 53180459 - Scrn1 protein_coding processed_transcript MGP_C3HHeJ_T0076099.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19209807 19491298 + MGP_C3HHeJ_P0076099 Cped1 protein_coding protein_coding MGP_C3HHeJ_T0076100.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19209835 19233548 + Cped1 protein_coding processed_transcript MGP_C3HHeJ_T0076101.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19209835 19351189 + MGP_C3HHeJ_P0076101 Cped1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076102.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19210487 19350216 + MGP_C3HHeJ_P0076102 Cped1 protein_coding protein_coding MGP_C3HHeJ_T0076103.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19210783 19296924 + Cped1 protein_coding processed_transcript MGP_C3HHeJ_T0076104.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19240911 19474897 + MGP_C3HHeJ_P0076104 Cped1 protein_coding protein_coding MGP_C3HHeJ_T0076105.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19249826 19313577 + Cped1 protein_coding processed_transcript MGP_C3HHeJ_T0076106.1 MGP_C3HHeJ_G0030178.1 mouse_genomes_project 6 19356093 19368762 + Cped1 protein_coding retained_intron MGP_C3HHeJ_T0101462.1 MGP_C3HHeJ_G0039470.1 mouse_genomes_project 6 133713054 133729021 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0098526.1 MGP_C3HHeJ_G0036727.1 mouse_genomes_project 6 93135338 93135653 + sense_intronic sense_intronic MGP_C3HHeJ_T0008404.1 MGP_C3HHeJ_G0006806.1 mouse_genomes_project 6 767596 782926 - Gm43986 lincRNA lincRNA MGP_C3HHeJ_T0010724.1 MGP_C3HHeJ_G0008857.1 mouse_genomes_project 6 127129724 127129811 + Mir3098 miRNA miRNA MGP_C3HHeJ_T0078152.1 MGP_C3HHeJ_G0030638.1 mouse_genomes_project 6 80954523 81383378 + MGP_C3HHeJ_P0078152 Cntn3 protein_coding protein_coding MGP_C3HHeJ_T0078153.1 MGP_C3HHeJ_G0030638.1 mouse_genomes_project 6 81071573 81383376 + MGP_C3HHeJ_P0078153 Cntn3 protein_coding protein_coding MGP_C3HHeJ_T0078154.1 MGP_C3HHeJ_G0030638.1 mouse_genomes_project 6 81380480 81384027 + Cntn3 protein_coding retained_intron MGP_C3HHeJ_T0080610.1 MGP_C3HHeJ_G0031186.1 mouse_genomes_project 6 149144750 149230860 + MGP_C3HHeJ_P0080610 Rassf8 protein_coding protein_coding MGP_C3HHeJ_T0080611.1 MGP_C3HHeJ_G0031186.1 mouse_genomes_project 6 149148552 149224971 + MGP_C3HHeJ_P0080611 Rassf8 protein_coding protein_coding MGP_C3HHeJ_T0080612.1 MGP_C3HHeJ_G0031186.1 mouse_genomes_project 6 149217221 149227368 + MGP_C3HHeJ_P0080612 Rassf8 protein_coding protein_coding MGP_C3HHeJ_T0080613.1 MGP_C3HHeJ_G0031186.1 mouse_genomes_project 6 149229725 149230855 + MGP_C3HHeJ_P0080613 Rassf8 protein_coding protein_coding MGP_C3HHeJ_T0015273.1 MGP_C3HHeJ_G0013377.1 mouse_genomes_project 6 91586716 91587192 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076816.1 MGP_C3HHeJ_G0030335.1 mouse_genomes_project 6 40003216 40008165 + MGP_C3HHeJ_P0076816 Sval3 protein_coding protein_coding MGP_C3HHeJ_T0101453.1 MGP_C3HHeJ_G0039465.1 mouse_genomes_project 6 131253671 131260095 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101454.1 MGP_C3HHeJ_G0039465.1 mouse_genomes_project 6 131258149 131260087 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0002002.1 MGP_C3HHeJ_G0001923.1 mouse_genomes_project 6 86575779 86579306 - TEC TEC MGP_C3HHeJ_T0002016.1 MGP_C3HHeJ_G0001937.1 mouse_genomes_project 6 92702603 92705432 + TEC TEC MGP_C3HHeJ_T0076747.1 MGP_C3HHeJ_G0030302.1 mouse_genomes_project 6 38350257 38385621 - MGP_C3HHeJ_P0076747 E330009J07Rik protein_coding protein_coding MGP_C3HHeJ_T0076748.1 MGP_C3HHeJ_G0030302.1 mouse_genomes_project 6 38356382 38385619 - MGP_C3HHeJ_P0076748 E330009J07Rik protein_coding protein_coding MGP_C3HHeJ_T0076749.1 MGP_C3HHeJ_G0030302.1 mouse_genomes_project 6 38368154 38380896 - MGP_C3HHeJ_P0076749 E330009J07Rik protein_coding protein_coding MGP_C3HHeJ_T0076750.1 MGP_C3HHeJ_G0030302.1 mouse_genomes_project 6 38373084 38385601 - E330009J07Rik protein_coding retained_intron MGP_C3HHeJ_T0002619.1 MGP_C3HHeJ_G0002512.1 mouse_genomes_project 6 39140335 39140826 + MGP_C3HHeJ_P0002619 Trbv16 TR_V_gene TR_V_gene MGP_C3HHeJ_T0075851.1 MGP_C3HHeJ_G0030131.1 mouse_genomes_project 6 2173249 2226910 + MGP_C3HHeJ_P0075851 Asb4 protein_coding protein_coding MGP_C3HHeJ_T0075852.1 MGP_C3HHeJ_G0030131.1 mouse_genomes_project 6 2180572 2192379 + MGP_C3HHeJ_P0075852 Asb4 protein_coding protein_coding MGP_C3HHeJ_T0076460.1 MGP_C3HHeJ_G0030247.1 mouse_genomes_project 6 29788311 30240921 - MGP_C3HHeJ_P0076460 Plxna4 protein_coding protein_coding MGP_C3HHeJ_T0076461.1 MGP_C3HHeJ_G0030247.1 mouse_genomes_project 6 29869746 29871173 - Plxna4 protein_coding retained_intron MGP_C3HHeJ_T0005055.1 MGP_C3HHeJ_G0004307.1 mouse_genomes_project 6 149356279 149362089 - Sspnos antisense antisense MGP_C3HHeJ_T0008494.1 MGP_C3HHeJ_G0006860.1 mouse_genomes_project 6 42215709 42218566 - Gm35216 lincRNA lincRNA MGP_C3HHeJ_T0077122.1 MGP_C3HHeJ_G0030420.1 mouse_genomes_project 6 48290764 48297552 + MGP_C3HHeJ_P0077122 Npy protein_coding protein_coding MGP_C3HHeJ_T0076284.1 MGP_C3HHeJ_G0030221.1 mouse_genomes_project 6 26973037 26975066 + MGP_C3HHeJ_P0076284 Gm9047 protein_coding protein_coding MGP_C3HHeJ_T0001918.1 MGP_C3HHeJ_G0001840.1 mouse_genomes_project 6 38026888 38029242 + TEC TEC MGP_C3HHeJ_T0008496.1 MGP_C3HHeJ_G0006862.1 mouse_genomes_project 6 46459542 46488376 - lincRNA lincRNA MGP_C3HHeJ_T0079798.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126962537 126966996 + MGP_C3HHeJ_P0079798 Acrbp protein_coding protein_coding MGP_C3HHeJ_T0079799.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126962796 126964346 + MGP_C3HHeJ_P0079799 Acrbp protein_coding protein_coding MGP_C3HHeJ_T0079800.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126962808 126977605 + MGP_C3HHeJ_P0079800 Acrbp protein_coding protein_coding MGP_C3HHeJ_T0079801.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126962816 126964398 + MGP_C3HHeJ_P0079801 Acrbp protein_coding protein_coding MGP_C3HHeJ_T0079802.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126964704 126966995 + Acrbp protein_coding processed_transcript MGP_C3HHeJ_T0079803.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126966603 126968010 + Acrbp protein_coding retained_intron MGP_C3HHeJ_T0079804.1 MGP_C3HHeJ_G0030984.1 mouse_genomes_project 6 126976526 126977580 + Acrbp protein_coding retained_intron MGP_C3HHeJ_T0077383.1 MGP_C3HHeJ_G0030480.1 mouse_genomes_project 6 55738168 55739232 + MGP_C3HHeJ_P0077383 Vmn1r6 protein_coding protein_coding MGP_C3HHeJ_T0076263.1 MGP_C3HHeJ_G0030217.1 mouse_genomes_project 6 26874233 26878077 - MGP_C3HHeJ_P0076263 Opn1sw protein_coding protein_coding MGP_C3HHeJ_T0076264.1 MGP_C3HHeJ_G0030217.1 mouse_genomes_project 6 26874946 26877995 - MGP_C3HHeJ_P0076264 Opn1sw protein_coding protein_coding MGP_C3HHeJ_T0076265.1 MGP_C3HHeJ_G0030217.1 mouse_genomes_project 6 26876494 26877977 - Opn1sw protein_coding processed_transcript MGP_C3HHeJ_T0076266.1 MGP_C3HHeJ_G0030217.1 mouse_genomes_project 6 26876936 26887800 - MGP_C3HHeJ_P0076266 Opn1sw protein_coding protein_coding MGP_C3HHeJ_T0004901.1 MGP_C3HHeJ_G0004198.1 mouse_genomes_project 6 67690085 67703246 + Gm44079 antisense antisense MGP_C3HHeJ_T0080312.1 MGP_C3HHeJ_G0031133.1 mouse_genomes_project 6 139902712 139912229 - MGP_C3HHeJ_P0080312 Art4 protein_coding protein_coding MGP_C3HHeJ_T0008470.1 MGP_C3HHeJ_G0006847.1 mouse_genomes_project 6 29759482 29760566 + Gm13850 lincRNA lincRNA MGP_C3HHeJ_T0080459.1 MGP_C3HHeJ_G0031160.1 mouse_genomes_project 6 145164245 145206189 - MGP_C3HHeJ_P0080459 Slco1a1 protein_coding protein_coding MGP_C3HHeJ_T0080460.1 MGP_C3HHeJ_G0031160.1 mouse_genomes_project 6 145164816 145206341 - MGP_C3HHeJ_P0080460 Slco1a1 protein_coding protein_coding MGP_C3HHeJ_T0080461.1 MGP_C3HHeJ_G0031160.1 mouse_genomes_project 6 145181556 145206195 - Slco1a1 protein_coding retained_intron MGP_C3HHeJ_T0000171.1 MGP_C3HHeJ_G0000131.1 mouse_genomes_project 6 116131545 116132029 + MGP_C3HHeJ_P0000171 Igkv19-93 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000172.1 MGP_C3HHeJ_G0000131.1 mouse_genomes_project 6 116131561 116132029 + MGP_C3HHeJ_P0000172 Igkv19-93 IG_V_gene IG_V_gene MGP_C3HHeJ_T0078638.1 MGP_C3HHeJ_G0030740.1 mouse_genomes_project 6 96699725 96705396 + MGP_C3HHeJ_P0078638 Gkn3 protein_coding protein_coding MGP_C3HHeJ_T0005016.1 MGP_C3HHeJ_G0004274.1 mouse_genomes_project 6 129162911 129166802 + Gm43126 antisense antisense MGP_C3HHeJ_T0015471.1 MGP_C3HHeJ_G0013575.1 mouse_genomes_project 6 150421694 150422153 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080027.1 MGP_C3HHeJ_G0031035.1 mouse_genomes_project 6 130818280 130835264 + MGP_C3HHeJ_P0080027 Clec2h protein_coding protein_coding MGP_C3HHeJ_T0080028.1 MGP_C3HHeJ_G0031035.1 mouse_genomes_project 6 130818281 130832870 + MGP_C3HHeJ_P0080028 Clec2h protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080029.1 MGP_C3HHeJ_G0031035.1 mouse_genomes_project 6 130818282 130832661 + MGP_C3HHeJ_P0080029 Clec2h protein_coding protein_coding MGP_C3HHeJ_T0080030.1 MGP_C3HHeJ_G0031035.1 mouse_genomes_project 6 130818286 130832863 + Clec2h protein_coding retained_intron MGP_C3HHeJ_T0000048.1 MGP_C3HHeJ_G0000038.1 mouse_genomes_project 6 113868379 113868417 - MGP_C3HHeJ_P0000048 Igkj1 IG_J_gene IG_J_gene MGP_C3HHeJ_T0015297.1 MGP_C3HHeJ_G0013401.1 mouse_genomes_project 6 100449788 100450166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008649.1 MGP_C3HHeJ_G0006986.1 mouse_genomes_project 6 130261160 130276286 - 9330102E08Rik lincRNA lincRNA MGP_C3HHeJ_T0076557.1 MGP_C3HHeJ_G0030262.1 mouse_genomes_project 6 32637331 32658003 + MGP_C3HHeJ_P0076557 Stra8 protein_coding protein_coding MGP_C3HHeJ_T0076558.1 MGP_C3HHeJ_G0030262.1 mouse_genomes_project 6 32638128 32658001 + MGP_C3HHeJ_P0076558 Stra8 protein_coding protein_coding MGP_C3HHeJ_T0076559.1 MGP_C3HHeJ_G0030262.1 mouse_genomes_project 6 32638172 32652020 + MGP_C3HHeJ_P0076559 Stra8 protein_coding protein_coding MGP_C3HHeJ_T0076560.1 MGP_C3HHeJ_G0030262.1 mouse_genomes_project 6 32638178 32658001 + MGP_C3HHeJ_P0076560 Stra8 protein_coding protein_coding MGP_C3HHeJ_T0004949.1 MGP_C3HHeJ_G0004229.1 mouse_genomes_project 6 96148194 96153811 + Gm26636 antisense antisense MGP_C3HHeJ_T0078463.1 MGP_C3HHeJ_G0030712.1 mouse_genomes_project 6 94623702 94670057 + MGP_C3HHeJ_P0078463 Plxna1 protein_coding protein_coding MGP_C3HHeJ_T0078464.1 MGP_C3HHeJ_G0030712.1 mouse_genomes_project 6 94643601 94650780 + MGP_C3HHeJ_P0078464 Plxna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078465.1 MGP_C3HHeJ_G0030712.1 mouse_genomes_project 6 94653120 94655814 + Plxna1 protein_coding processed_transcript MGP_C3HHeJ_T0078466.1 MGP_C3HHeJ_G0030712.1 mouse_genomes_project 6 94661558 94663677 + MGP_C3HHeJ_P0078466 Plxna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078467.1 MGP_C3HHeJ_G0030712.1 mouse_genomes_project 6 94665102 94665568 + Plxna1 protein_coding retained_intron MGP_C3HHeJ_T0098527.1 MGP_C3HHeJ_G0036728.1 mouse_genomes_project 6 95683578 95684043 + Gm44265 sense_intronic sense_intronic MGP_C3HHeJ_T0080411.1 MGP_C3HHeJ_G0031150.1 mouse_genomes_project 6 143163908 143217937 - MGP_C3HHeJ_P0080411 Plcz1 protein_coding protein_coding MGP_C3HHeJ_T0080412.1 MGP_C3HHeJ_G0031150.1 mouse_genomes_project 6 143163957 143217911 - MGP_C3HHeJ_P0080412 Plcz1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080413.1 MGP_C3HHeJ_G0031150.1 mouse_genomes_project 6 143163959 143217892 - MGP_C3HHeJ_P0080413 Plcz1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080414.1 MGP_C3HHeJ_G0031150.1 mouse_genomes_project 6 143197127 143217892 - MGP_C3HHeJ_P0080414 Plcz1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080260.1 MGP_C3HHeJ_G0031121.1 mouse_genomes_project 6 138187711 138198315 - MGP_C3HHeJ_P0080260 Gsg1 protein_coding protein_coding MGP_C3HHeJ_T0080261.1 MGP_C3HHeJ_G0031121.1 mouse_genomes_project 6 138187714 138204547 - MGP_C3HHeJ_P0080261 Gsg1 protein_coding protein_coding MGP_C3HHeJ_T0080262.1 MGP_C3HHeJ_G0031121.1 mouse_genomes_project 6 138187714 138204703 - MGP_C3HHeJ_P0080262 Gsg1 protein_coding protein_coding MGP_C3HHeJ_T0080263.1 MGP_C3HHeJ_G0031121.1 mouse_genomes_project 6 138187721 138204728 - MGP_C3HHeJ_P0080263 Gsg1 protein_coding protein_coding MGP_C3HHeJ_T0079398.1 MGP_C3HHeJ_G0030894.1 mouse_genomes_project 6 118445993 118446922 + MGP_C3HHeJ_P0079398 Vmn1r34 protein_coding protein_coding MGP_C3HHeJ_T0008603.1 MGP_C3HHeJ_G0006947.1 mouse_genomes_project 6 97625035 97625719 + Gm43936 lincRNA lincRNA MGP_C3HHeJ_T0080299.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139829022 139857597 - MGP_C3HHeJ_P0080299 Wbp11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080300.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139829026 139857650 - MGP_C3HHeJ_P0080300 Wbp11 protein_coding protein_coding MGP_C3HHeJ_T0080301.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139832978 139837367 - MGP_C3HHeJ_P0080301 Wbp11 protein_coding protein_coding MGP_C3HHeJ_T0080302.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139833203 139857553 - MGP_C3HHeJ_P0080302 Wbp11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080303.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139835889 139857560 - Wbp11 protein_coding retained_intron MGP_C3HHeJ_T0080304.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139845221 139857552 - Wbp11 protein_coding retained_intron MGP_C3HHeJ_T0080305.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139845971 139846959 - Wbp11 protein_coding retained_intron MGP_C3HHeJ_T0080306.1 MGP_C3HHeJ_G0031130.1 mouse_genomes_project 6 139846379 139857153 - MGP_C3HHeJ_P0080306 Wbp11 protein_coding protein_coding MGP_C3HHeJ_T0100753.1 MGP_C3HHeJ_G0038947.1 mouse_genomes_project 6 47345260 47345390 + Gm24348 snoRNA snoRNA MGP_C3HHeJ_T0002140.1 MGP_C3HHeJ_G0002061.1 mouse_genomes_project 6 148678419 148679396 + TEC TEC MGP_C3HHeJ_T0080235.1 MGP_C3HHeJ_G0031115.1 mouse_genomes_project 6 137920542 137925699 + MGP_C3HHeJ_P0080235 Apold1 protein_coding protein_coding MGP_C3HHeJ_T0005053.1 MGP_C3HHeJ_G0004305.1 mouse_genomes_project 6 148551321 148556873 + Gm15543 antisense antisense MGP_C3HHeJ_T0079911.1 MGP_C3HHeJ_G0031008.1 mouse_genomes_project 6 128885570 128908155 + MGP_C3HHeJ_P0079911 Akap3 protein_coding protein_coding MGP_C3HHeJ_T0079912.1 MGP_C3HHeJ_G0031008.1 mouse_genomes_project 6 128885616 128908152 + MGP_C3HHeJ_P0079912 Akap3 protein_coding protein_coding MGP_C3HHeJ_T0079913.1 MGP_C3HHeJ_G0031008.1 mouse_genomes_project 6 128885632 128908155 + MGP_C3HHeJ_P0079913 Akap3 protein_coding protein_coding MGP_C3HHeJ_T0015168.1 MGP_C3HHeJ_G0013272.1 mouse_genomes_project 6 50666462 50667116 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078710.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97685376 97714431 - MGP_C3HHeJ_P0078710 Tia1 protein_coding protein_coding MGP_C3HHeJ_T0078711.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97685554 97714325 - MGP_C3HHeJ_P0078711 Tia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078712.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97686596 97714337 - MGP_C3HHeJ_P0078712 Tia1 protein_coding protein_coding MGP_C3HHeJ_T0078713.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97686601 97714314 - MGP_C3HHeJ_P0078713 Tia1 protein_coding protein_coding MGP_C3HHeJ_T0078714.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97687580 97714431 - MGP_C3HHeJ_P0078714 Tia1 protein_coding protein_coding MGP_C3HHeJ_T0078715.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97688009 97714346 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078716.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97688010 97714336 - MGP_C3HHeJ_P0078716 Tia1 protein_coding protein_coding MGP_C3HHeJ_T0078717.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97688478 97693286 - MGP_C3HHeJ_P0078717 Tia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078718.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97690952 97714333 - MGP_C3HHeJ_P0078718 Tia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078719.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97690990 97698340 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078720.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97691007 97714354 - MGP_C3HHeJ_P0078720 Tia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078721.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97693061 97693761 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078722.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97693251 97699198 - Tia1 protein_coding processed_transcript MGP_C3HHeJ_T0078723.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97693475 97714177 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078724.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97693767 97694933 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078725.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97694127 97696633 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078726.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97694338 97698666 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078727.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97694898 97714327 - Tia1 protein_coding processed_transcript MGP_C3HHeJ_T0078728.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97694912 97698698 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078729.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97695146 97699390 - Tia1 protein_coding processed_transcript MGP_C3HHeJ_T0078730.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97696633 97704772 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078731.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97698719 97714290 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078732.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97698754 97714314 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078733.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97698800 97714354 - Tia1 protein_coding processed_transcript MGP_C3HHeJ_T0078734.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97700144 97702808 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078735.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97700607 97714359 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0078736.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97711536 97714368 - Tia1 protein_coding processed_transcript MGP_C3HHeJ_T0078737.1 MGP_C3HHeJ_G0030756.1 mouse_genomes_project 6 97713481 97714415 - Tia1 protein_coding retained_intron MGP_C3HHeJ_T0080170.1 MGP_C3HHeJ_G0031093.1 mouse_genomes_project 6 135588908 135590066 + MGP_C3HHeJ_P0080170 Tas2r117 protein_coding protein_coding MGP_C3HHeJ_T0080104.1 MGP_C3HHeJ_G0031057.1 mouse_genomes_project 6 131909268 131913506 - MGP_C3HHeJ_P0080104 Klrc3 protein_coding protein_coding MGP_C3HHeJ_T0080105.1 MGP_C3HHeJ_G0031057.1 mouse_genomes_project 6 131909268 131913506 - MGP_C3HHeJ_P0080105 Klrc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080106.1 MGP_C3HHeJ_G0031057.1 mouse_genomes_project 6 131909289 131913506 - MGP_C3HHeJ_P0080106 Klrc3 protein_coding protein_coding MGP_C3HHeJ_T0011522.1 MGP_C3HHeJ_G0009655.1 mouse_genomes_project 6 1122076 1122403 + Gm24442 misc_RNA misc_RNA MGP_C3HHeJ_T0079678.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126660980 126664536 - Eno2 protein_coding retained_intron MGP_C3HHeJ_T0079679.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126660982 126670354 - MGP_C3HHeJ_P0079679 Eno2 protein_coding protein_coding MGP_C3HHeJ_T0079680.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126660982 126670406 - MGP_C3HHeJ_P0079680 Eno2 protein_coding protein_coding MGP_C3HHeJ_T0079681.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126661292 126669070 - Eno2 protein_coding retained_intron MGP_C3HHeJ_T0079682.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126661848 126670253 - MGP_C3HHeJ_P0079682 Eno2 protein_coding protein_coding MGP_C3HHeJ_T0079683.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126662081 126664210 - Eno2 protein_coding retained_intron MGP_C3HHeJ_T0079684.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126662140 126664246 - Eno2 protein_coding retained_intron MGP_C3HHeJ_T0079685.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126663580 126664845 - Eno2 protein_coding processed_transcript MGP_C3HHeJ_T0079686.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126664690 126669063 - MGP_C3HHeJ_P0079686 Eno2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079687.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126664793 126669109 - MGP_C3HHeJ_P0079687 Eno2 protein_coding protein_coding MGP_C3HHeJ_T0079688.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126666873 126670217 - MGP_C3HHeJ_P0079688 Eno2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079689.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126666954 126669064 - MGP_C3HHeJ_P0079689 Eno2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079690.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126667017 126670283 - MGP_C3HHeJ_P0079690 Eno2 protein_coding protein_coding MGP_C3HHeJ_T0079691.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126667502 126669070 - Eno2 protein_coding retained_intron MGP_C3HHeJ_T0079692.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126667680 126670249 - Eno2 protein_coding retained_intron MGP_C3HHeJ_T0079693.1 MGP_C3HHeJ_G0030967.1 mouse_genomes_project 6 126668440 126670219 - MGP_C3HHeJ_P0079693 Eno2 protein_coding protein_coding MGP_C3HHeJ_T0076285.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26974762 26986035 - Kcp protein_coding retained_intron MGP_C3HHeJ_T0076286.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26983926 26986751 - MGP_C3HHeJ_P0076286 Kcp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076287.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26983926 26997801 - MGP_C3HHeJ_P0076287 Kcp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076288.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26983926 27009825 - MGP_C3HHeJ_P0076288 Kcp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076289.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26984135 27009814 - MGP_C3HHeJ_P0076289 Kcp protein_coding protein_coding MGP_C3HHeJ_T0076290.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26985583 26986863 - Kcp protein_coding retained_intron MGP_C3HHeJ_T0076291.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26998731 27000495 - Kcp protein_coding retained_intron MGP_C3HHeJ_T0076292.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 26999816 27004712 - MGP_C3HHeJ_P0076292 Kcp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076293.1 MGP_C3HHeJ_G0030222.1 mouse_genomes_project 6 27004177 27009840 - MGP_C3HHeJ_P0076293 Kcp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015289.1 MGP_C3HHeJ_G0013393.1 mouse_genomes_project 6 99101923 99102680 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077328.1 MGP_C3HHeJ_G0030467.1 mouse_genomes_project 6 54036607 54043148 + Ghrhr protein_coding retained_intron MGP_C3HHeJ_T0077329.1 MGP_C3HHeJ_G0030467.1 mouse_genomes_project 6 54036655 54050240 + MGP_C3HHeJ_P0077329 Ghrhr protein_coding protein_coding MGP_C3HHeJ_T0077330.1 MGP_C3HHeJ_G0030467.1 mouse_genomes_project 6 54036677 54050029 + MGP_C3HHeJ_P0077330 Ghrhr protein_coding protein_coding MGP_C3HHeJ_T0078304.1 MGP_C3HHeJ_G0030670.1 mouse_genomes_project 6 91621514 91624104 + MGP_C3HHeJ_P0078304 Trh protein_coding protein_coding MGP_C3HHeJ_T0077833.1 MGP_C3HHeJ_G0030582.1 mouse_genomes_project 6 67899670 67932195 - MGP_C3HHeJ_P0077833 Gm17482 protein_coding protein_coding MGP_C3HHeJ_T0078429.1 MGP_C3HHeJ_G0030692.1 mouse_genomes_project 6 93531250 93566059 - MGP_C3HHeJ_P0078429 Zxdc protein_coding protein_coding MGP_C3HHeJ_T0078430.1 MGP_C3HHeJ_G0030692.1 mouse_genomes_project 6 93549963 93566061 - MGP_C3HHeJ_P0078430 Zxdc protein_coding protein_coding MGP_C3HHeJ_T0078431.1 MGP_C3HHeJ_G0030692.1 mouse_genomes_project 6 93550832 93565945 - MGP_C3HHeJ_P0078431 Zxdc protein_coding protein_coding MGP_C3HHeJ_T0078432.1 MGP_C3HHeJ_G0030692.1 mouse_genomes_project 6 93551944 93565940 - MGP_C3HHeJ_P0078432 Zxdc protein_coding protein_coding MGP_C3HHeJ_T0078433.1 MGP_C3HHeJ_G0030692.1 mouse_genomes_project 6 93561001 93565935 - Zxdc protein_coding retained_intron MGP_C3HHeJ_T0015163.1 MGP_C3HHeJ_G0013267.1 mouse_genomes_project 6 48325934 48327835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079590.1 MGP_C3HHeJ_G0030941.1 mouse_genomes_project 6 124913503 124926304 + MGP_C3HHeJ_P0079590 Clec4d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079591.1 MGP_C3HHeJ_G0030941.1 mouse_genomes_project 6 124913509 124926646 + MGP_C3HHeJ_P0079591 Clec4d protein_coding protein_coding MGP_C3HHeJ_T0079592.1 MGP_C3HHeJ_G0030941.1 mouse_genomes_project 6 124919114 124926093 + Clec4d protein_coding retained_intron MGP_C3HHeJ_T0015371.1 MGP_C3HHeJ_G0013475.1 mouse_genomes_project 6 119923394 119923685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015043.1 MGP_C3HHeJ_G0013147.1 mouse_genomes_project 6 997230 997477 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078434.1 MGP_C3HHeJ_G0030693.1 mouse_genomes_project 6 93571007 93602324 - MGP_C3HHeJ_P0078434 Uroc1 protein_coding protein_coding MGP_C3HHeJ_T0078435.1 MGP_C3HHeJ_G0030693.1 mouse_genomes_project 6 93571012 93602319 - MGP_C3HHeJ_P0078435 Uroc1 protein_coding protein_coding MGP_C3HHeJ_T0015345.1 MGP_C3HHeJ_G0013449.1 mouse_genomes_project 6 117399673 117400728 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079458.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122327846 122398394 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079459.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122327864 122375822 - MGP_C3HHeJ_P0079459 Mical3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079460.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122330919 122355557 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079461.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122330963 122331673 - Mical3 protein_coding retained_intron MGP_C3HHeJ_T0079462.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122347613 122354645 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079463.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122355264 122398394 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079464.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122356933 122363074 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079465.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122391684 122418840 - MGP_C3HHeJ_P0079465 Mical3 protein_coding protein_coding MGP_C3HHeJ_T0079466.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122403244 122478128 - MGP_C3HHeJ_P0079466 Mical3 protein_coding protein_coding MGP_C3HHeJ_T0079467.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122403244 122478126 - MGP_C3HHeJ_P0079467 Mical3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079468.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122403245 122418855 - MGP_C3HHeJ_P0079468 Mical3 protein_coding protein_coding MGP_C3HHeJ_T0079469.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122413197 122418877 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079470.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122413197 122512365 - Mical3 protein_coding retained_intron MGP_C3HHeJ_T0079471.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122418798 122533849 - MGP_C3HHeJ_P0079471 Mical3 protein_coding protein_coding MGP_C3HHeJ_T0079472.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122418977 122422351 - Mical3 protein_coding retained_intron MGP_C3HHeJ_T0079473.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122421338 122421997 - Mical3 protein_coding processed_transcript MGP_C3HHeJ_T0079474.1 MGP_C3HHeJ_G0030910.1 mouse_genomes_project 6 122425527 122427352 - Mical3 protein_coding retained_intron MGP_C3HHeJ_T0079613.1 MGP_C3HHeJ_G0030953.1 mouse_genomes_project 6 126177514 126186906 - MGP_C3HHeJ_P0079613 1700013D24Rik protein_coding protein_coding MGP_C3HHeJ_T0079614.1 MGP_C3HHeJ_G0030953.1 mouse_genomes_project 6 126177519 126186889 - 1700013D24Rik protein_coding lincRNA MGP_C3HHeJ_T0077342.1 MGP_C3HHeJ_G0030471.1 mouse_genomes_project 6 54697812 54712917 + MGP_C3HHeJ_P0077342 Ppp1r17 protein_coding protein_coding MGP_C3HHeJ_T0100799.1 MGP_C3HHeJ_G0038993.1 mouse_genomes_project 6 126613552 126613824 + Gm23547 snoRNA snoRNA MGP_C3HHeJ_T0004909.1 MGP_C3HHeJ_G0004206.1 mouse_genomes_project 6 70161688 70168969 + antisense antisense MGP_C3HHeJ_T0004910.1 MGP_C3HHeJ_G0004206.1 mouse_genomes_project 6 70161811 70169345 + antisense antisense MGP_C3HHeJ_T0004911.1 MGP_C3HHeJ_G0004206.1 mouse_genomes_project 6 70161830 70172315 + antisense antisense MGP_C3HHeJ_T0004912.1 MGP_C3HHeJ_G0004206.1 mouse_genomes_project 6 70161844 70172084 + antisense antisense MGP_C3HHeJ_T0079571.1 MGP_C3HHeJ_G0030932.1 mouse_genomes_project 6 124520665 124530203 - MGP_C3HHeJ_P0079571 C3ar1 protein_coding protein_coding MGP_C3HHeJ_T0015390.1 MGP_C3HHeJ_G0013494.1 mouse_genomes_project 6 123926068 123926307 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076616.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35865294 35868376 - Atp6v0a4 protein_coding processed_transcript MGP_C3HHeJ_T0076617.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35865294 35928656 - MGP_C3HHeJ_P0076617 Atp6v0a4 protein_coding protein_coding MGP_C3HHeJ_T0076618.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35865294 35944624 - MGP_C3HHeJ_P0076618 Atp6v0a4 protein_coding protein_coding MGP_C3HHeJ_T0076619.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35868095 35873661 - Atp6v0a4 protein_coding retained_intron MGP_C3HHeJ_T0076620.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35897313 35901757 - Atp6v0a4 protein_coding retained_intron MGP_C3HHeJ_T0076621.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35906993 35915536 - Atp6v0a4 protein_coding retained_intron MGP_C3HHeJ_T0076622.1 MGP_C3HHeJ_G0030276.1 mouse_genomes_project 6 35912015 35944527 - Atp6v0a4 protein_coding retained_intron MGP_C3HHeJ_T0077387.1 MGP_C3HHeJ_G0030484.1 mouse_genomes_project 6 55771805 55773523 + MGP_C3HHeJ_P0077387 protein_coding protein_coding MGP_C3HHeJ_T0015446.1 MGP_C3HHeJ_G0013550.1 mouse_genomes_project 6 135900433 135900779 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002055.1 MGP_C3HHeJ_G0001976.1 mouse_genomes_project 6 101186094 101187612 + TEC TEC MGP_C3HHeJ_T0015466.1 MGP_C3HHeJ_G0013570.1 mouse_genomes_project 6 146399803 146400272 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001944.1 MGP_C3HHeJ_G0001866.1 mouse_genomes_project 6 45025030 45028780 + TEC TEC MGP_C3HHeJ_T0076884.1 MGP_C3HHeJ_G0030356.1 mouse_genomes_project 6 40783183 40784137 + MGP_C3HHeJ_P0076884 Olfr453 protein_coding protein_coding MGP_C3HHeJ_T0078022.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69948476 69994869 - MGP_C3HHeJ_P0078022 Mtmr14 protein_coding protein_coding MGP_C3HHeJ_T0078023.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69948481 69994815 - MGP_C3HHeJ_P0078023 Mtmr14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078024.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69948672 69963855 - MGP_C3HHeJ_P0078024 Mtmr14 protein_coding protein_coding MGP_C3HHeJ_T0078025.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69948781 69960312 - MGP_C3HHeJ_P0078025 Mtmr14 protein_coding protein_coding MGP_C3HHeJ_T0078026.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69948949 69963886 - MGP_C3HHeJ_P0078026 Mtmr14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078027.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69951933 69969273 - MGP_C3HHeJ_P0078027 Mtmr14 protein_coding protein_coding MGP_C3HHeJ_T0078028.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69959066 69994861 - MGP_C3HHeJ_P0078028 Mtmr14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078029.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69960351 69977051 - MGP_C3HHeJ_P0078029 Mtmr14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078030.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69963819 69975337 - MGP_C3HHeJ_P0078030 Mtmr14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078031.1 MGP_C3HHeJ_G0030614.1 mouse_genomes_project 6 69974143 69993241 - MGP_C3HHeJ_P0078031 Mtmr14 protein_coding protein_coding MGP_C3HHeJ_T0001921.1 MGP_C3HHeJ_G0001843.1 mouse_genomes_project 6 39730408 39733955 - TEC TEC MGP_C3HHeJ_T0099545.1 MGP_C3HHeJ_G0037739.1 mouse_genomes_project 6 124847743 124847825 - Gm22946 snRNA snRNA MGP_C3HHeJ_T0015209.1 MGP_C3HHeJ_G0013313.1 mouse_genomes_project 6 68012666 68013500 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079414.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119537062 119582274 - MGP_C3HHeJ_P0079414 Tnip3 protein_coding protein_coding MGP_C3HHeJ_T0079415.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119539994 119642609 - MGP_C3HHeJ_P0079415 Tnip3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079416.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119572474 119575098 - Tnip3 protein_coding retained_intron MGP_C3HHeJ_T0079417.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119572497 119582256 - Tnip3 protein_coding retained_intron MGP_C3HHeJ_T0079418.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119577558 119582185 - Tnip3 protein_coding retained_intron MGP_C3HHeJ_T0079419.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119578971 119582213 - Tnip3 protein_coding retained_intron MGP_C3HHeJ_T0079420.1 MGP_C3HHeJ_G0030902.1 mouse_genomes_project 6 119581010 119582244 - Tnip3 protein_coding processed_transcript MGP_C3HHeJ_T0001902.1 MGP_C3HHeJ_G0001824.1 mouse_genomes_project 6 26008898 26010770 + TEC TEC MGP_C3HHeJ_T0080649.1 MGP_C3HHeJ_G0031192.1 mouse_genomes_project 6 150009687 150043828 - MGP_C3HHeJ_P0080649 Tm7sf3 protein_coding protein_coding MGP_C3HHeJ_T0080650.1 MGP_C3HHeJ_G0031192.1 mouse_genomes_project 6 150018321 150043729 - MGP_C3HHeJ_P0080650 Tm7sf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080651.1 MGP_C3HHeJ_G0031192.1 mouse_genomes_project 6 150029653 150052055 - Tm7sf3 protein_coding processed_transcript MGP_C3HHeJ_T0080652.1 MGP_C3HHeJ_G0031192.1 mouse_genomes_project 6 150031664 150052065 - Tm7sf3 protein_coding processed_transcript MGP_C3HHeJ_T0002627.1 MGP_C3HHeJ_G0002518.1 mouse_genomes_project 6 39215431 39215920 + MGP_C3HHeJ_P0002627 Trbv26 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002628.1 MGP_C3HHeJ_G0002518.1 mouse_genomes_project 6 39215451 39215920 + MGP_C3HHeJ_P0002628 Trbv26 TR_V_gene TR_V_gene MGP_C3HHeJ_T0008531.1 MGP_C3HHeJ_G0006889.1 mouse_genomes_project 6 59052753 59149379 + lincRNA lincRNA MGP_C3HHeJ_T0008532.1 MGP_C3HHeJ_G0006889.1 mouse_genomes_project 6 59052795 59056720 + lincRNA lincRNA MGP_C3HHeJ_T0015256.1 MGP_C3HHeJ_G0013360.1 mouse_genomes_project 6 84814802 84815278 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079507.1 MGP_C3HHeJ_G0030919.1 mouse_genomes_project 6 123312368 123696859 + MGP_C3HHeJ_P0079507 Mug2 protein_coding protein_coding MGP_C3HHeJ_T0076225.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26606774 26650166 - MGP_C3HHeJ_P0076225 Rbm28 protein_coding protein_coding MGP_C3HHeJ_T0076226.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26609100 26640379 - Rbm28 protein_coding retained_intron MGP_C3HHeJ_T0076227.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26609134 26615196 - MGP_C3HHeJ_P0076227 Rbm28 protein_coding protein_coding MGP_C3HHeJ_T0076228.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26609342 26649812 - MGP_C3HHeJ_P0076228 Rbm28 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076229.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26611567 26649812 - MGP_C3HHeJ_P0076229 Rbm28 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076230.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26621320 26638138 - Rbm28 protein_coding retained_intron MGP_C3HHeJ_T0076231.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26641967 26645494 - Rbm28 protein_coding retained_intron MGP_C3HHeJ_T0076232.1 MGP_C3HHeJ_G0030210.1 mouse_genomes_project 6 26642427 26645269 - Rbm28 protein_coding retained_intron MGP_C3HHeJ_T0078755.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98011362 98110483 - MGP_C3HHeJ_P0078755 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078756.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98016203 98058810 - MGP_C3HHeJ_P0078756 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078757.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98016203 98058783 - MGP_C3HHeJ_P0078757 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078758.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98016932 98054062 - MGP_C3HHeJ_P0078758 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078759.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98016956 98050989 - MGP_C3HHeJ_P0078759 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078760.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98026283 98110440 - MGP_C3HHeJ_P0078760 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078761.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98026285 98058810 - MGP_C3HHeJ_P0078761 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078762.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98027454 98054062 - MGP_C3HHeJ_P0078762 Add2 protein_coding protein_coding MGP_C3HHeJ_T0078763.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98038633 98110506 - Add2 protein_coding retained_intron MGP_C3HHeJ_T0078764.1 MGP_C3HHeJ_G0030761.1 mouse_genomes_project 6 98043388 98086030 - MGP_C3HHeJ_P0078764 Add2 protein_coding protein_coding MGP_C3HHeJ_T0015285.1 MGP_C3HHeJ_G0013389.1 mouse_genomes_project 6 98264195 98264831 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011530.1 MGP_C3HHeJ_G0009663.1 mouse_genomes_project 6 14711825 14712009 + Gm27960 misc_RNA misc_RNA MGP_C3HHeJ_T0015058.1 MGP_C3HHeJ_G0013162.1 mouse_genomes_project 6 4667902 4668092 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004895.1 MGP_C3HHeJ_G0004192.1 mouse_genomes_project 6 57885755 57893116 + Gm45060 antisense antisense MGP_C3HHeJ_T0076778.1 MGP_C3HHeJ_G0030315.1 mouse_genomes_project 6 38883640 38903503 - MGP_C3HHeJ_P0076778 1700074P13Rik protein_coding protein_coding MGP_C3HHeJ_T0076779.1 MGP_C3HHeJ_G0030315.1 mouse_genomes_project 6 38883663 38903563 - MGP_C3HHeJ_P0076779 1700074P13Rik protein_coding protein_coding MGP_C3HHeJ_T0076780.1 MGP_C3HHeJ_G0030315.1 mouse_genomes_project 6 38884989 38893651 - MGP_C3HHeJ_P0076780 1700074P13Rik protein_coding protein_coding MGP_C3HHeJ_T0010712.1 MGP_C3HHeJ_G0008845.1 mouse_genomes_project 6 101214064 101214127 - Mir7040 miRNA miRNA MGP_C3HHeJ_T0077204.1 MGP_C3HHeJ_G0030441.1 mouse_genomes_project 6 50774398 50778659 - MGP_C3HHeJ_P0077204 Hoxa9 protein_coding protein_coding MGP_C3HHeJ_T0077205.1 MGP_C3HHeJ_G0030441.1 mouse_genomes_project 6 50775261 50782377 - Hoxa9 protein_coding processed_transcript MGP_C3HHeJ_T0077206.1 MGP_C3HHeJ_G0030441.1 mouse_genomes_project 6 50775419 50777478 - MGP_C3HHeJ_P0077206 Hoxa9 protein_coding protein_coding MGP_C3HHeJ_T0077207.1 MGP_C3HHeJ_G0030441.1 mouse_genomes_project 6 50775621 50781568 - Hoxa9 protein_coding processed_transcript MGP_C3HHeJ_T0077208.1 MGP_C3HHeJ_G0030441.1 mouse_genomes_project 6 50779535 50781821 - Hoxa9 protein_coding retained_intron MGP_C3HHeJ_T0077764.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67212946 67221237 - MGP_C3HHeJ_P0077764 Rho protein_coding protein_coding MGP_C3HHeJ_T0077765.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67215903 67218603 - MGP_C3HHeJ_P0077765 Rho protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077766.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67216023 67218636 - MGP_C3HHeJ_P0077766 Rho protein_coding protein_coding MGP_C3HHeJ_T0077767.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67216268 67220425 - MGP_C3HHeJ_P0077767 Rho protein_coding protein_coding MGP_C3HHeJ_T0077768.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67216747 67217778 - Rho protein_coding retained_intron MGP_C3HHeJ_T0077769.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67216931 67218237 - Rho protein_coding retained_intron MGP_C3HHeJ_T0077770.1 MGP_C3HHeJ_G0030569.1 mouse_genomes_project 6 67218879 67221060 - Rho protein_coding retained_intron MGP_C3HHeJ_T0004864.1 MGP_C3HHeJ_G0004170.1 mouse_genomes_project 6 37320179 37321195 + Gm10244 antisense antisense MGP_C3HHeJ_T0004865.1 MGP_C3HHeJ_G0004170.1 mouse_genomes_project 6 37320670 37321587 + Gm10244 antisense antisense MGP_C3HHeJ_T0002137.1 MGP_C3HHeJ_G0002058.1 mouse_genomes_project 6 147282670 147284919 - TEC TEC MGP_C3HHeJ_T0076901.1 MGP_C3HHeJ_G0030368.1 mouse_genomes_project 6 41271928 41272982 + MGP_C3HHeJ_P0076901 Olfr13 protein_coding protein_coding MGP_C3HHeJ_T0002039.1 MGP_C3HHeJ_G0001960.1 mouse_genomes_project 6 96836107 96839472 + TEC TEC MGP_C3HHeJ_T0080031.1 MGP_C3HHeJ_G0031036.1 mouse_genomes_project 6 130863717 130865681 - Klrb1 protein_coding processed_transcript MGP_C3HHeJ_T0080032.1 MGP_C3HHeJ_G0031036.1 mouse_genomes_project 6 130864331 130883024 - MGP_C3HHeJ_P0080032 Klrb1 protein_coding protein_coding MGP_C3HHeJ_T0004890.1 MGP_C3HHeJ_G0004187.1 mouse_genomes_project 6 52424205 52473874 + Gm43938 antisense antisense MGP_C3HHeJ_T0011533.1 MGP_C3HHeJ_G0009666.1 mouse_genomes_project 6 14720391 14720577 + Gm28008 misc_RNA misc_RNA MGP_C3HHeJ_T0005022.1 MGP_C3HHeJ_G0004279.1 mouse_genomes_project 6 130481172 130499009 - Gm15862 antisense antisense MGP_C3HHeJ_T0077100.1 MGP_C3HHeJ_G0030415.1 mouse_genomes_project 6 47498298 47641693 - MGP_C3HHeJ_P0077100 Igf2bp3 protein_coding protein_coding MGP_C3HHeJ_T0077101.1 MGP_C3HHeJ_G0030415.1 mouse_genomes_project 6 47501195 47507273 - Igf2bp3 protein_coding retained_intron MGP_C3HHeJ_T0077102.1 MGP_C3HHeJ_G0030415.1 mouse_genomes_project 6 47506172 47640898 - Igf2bp3 protein_coding retained_intron MGP_C3HHeJ_T0077103.1 MGP_C3HHeJ_G0030415.1 mouse_genomes_project 6 47521365 47525059 - Igf2bp3 protein_coding processed_transcript MGP_C3HHeJ_T0077104.1 MGP_C3HHeJ_G0030415.1 mouse_genomes_project 6 47588029 47641441 - Igf2bp3 protein_coding processed_transcript MGP_C3HHeJ_T0078090.1 MGP_C3HHeJ_G0030627.1 mouse_genomes_project 6 74741917 74748259 - MGP_C3HHeJ_P0078090 Bhlhe40 protein_coding protein_coding MGP_C3HHeJ_T0078091.1 MGP_C3HHeJ_G0030627.1 mouse_genomes_project 6 74743177 74745803 - Bhlhe40 protein_coding retained_intron MGP_C3HHeJ_T0078092.1 MGP_C3HHeJ_G0030627.1 mouse_genomes_project 6 74746188 74748014 - MGP_C3HHeJ_P0078092 Bhlhe40 protein_coding protein_coding MGP_C3HHeJ_T0078093.1 MGP_C3HHeJ_G0030627.1 mouse_genomes_project 6 74747553 74748089 - Bhlhe40 protein_coding retained_intron MGP_C3HHeJ_T0010661.1 MGP_C3HHeJ_G0008794.1 mouse_genomes_project 6 16640167 16640287 + Mir6370 miRNA miRNA MGP_C3HHeJ_T0077880.1 MGP_C3HHeJ_G0030589.1 mouse_genomes_project 6 68945625 69065978 - MGP_C3HHeJ_P0077880 Slc6a11 protein_coding protein_coding MGP_C3HHeJ_T0077881.1 MGP_C3HHeJ_G0030589.1 mouse_genomes_project 6 69064783 69065800 - Slc6a11 protein_coding retained_intron MGP_C3HHeJ_T0077060.1 MGP_C3HHeJ_G0030405.1 mouse_genomes_project 6 47147030 47155500 + MGP_C3HHeJ_P0077060 Gimap5 protein_coding protein_coding MGP_C3HHeJ_T0077061.1 MGP_C3HHeJ_G0030405.1 mouse_genomes_project 6 47147031 47148326 + Gimap5 protein_coding processed_transcript MGP_C3HHeJ_T0077062.1 MGP_C3HHeJ_G0030405.1 mouse_genomes_project 6 47147032 47148353 + Gimap5 protein_coding processed_transcript MGP_C3HHeJ_T0077063.1 MGP_C3HHeJ_G0030405.1 mouse_genomes_project 6 47147132 47149467 + Gimap5 protein_coding retained_intron MGP_C3HHeJ_T0078472.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95102769 95107020 - MGP_C3HHeJ_P0078472 Tpra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078473.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95102776 95112741 - MGP_C3HHeJ_P0078473 Tpra1 protein_coding protein_coding MGP_C3HHeJ_T0078474.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95102776 95112659 - MGP_C3HHeJ_P0078474 Tpra1 protein_coding protein_coding MGP_C3HHeJ_T0078475.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95102776 95109046 - MGP_C3HHeJ_P0078475 Tpra1 protein_coding protein_coding MGP_C3HHeJ_T0078476.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95102776 95112539 - MGP_C3HHeJ_P0078476 Tpra1 protein_coding protein_coding MGP_C3HHeJ_T0078477.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95103023 95107020 - MGP_C3HHeJ_P0078477 Tpra1 protein_coding protein_coding MGP_C3HHeJ_T0078478.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95103252 95104409 - Tpra1 protein_coding retained_intron MGP_C3HHeJ_T0078479.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95103260 95109035 - MGP_C3HHeJ_P0078479 Tpra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078480.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95103906 95107006 - MGP_C3HHeJ_P0078480 Tpra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078481.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104058 95104850 - Tpra1 protein_coding retained_intron MGP_C3HHeJ_T0078482.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104187 95109017 - MGP_C3HHeJ_P0078482 Tpra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078483.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104359 95108951 - MGP_C3HHeJ_P0078483 Tpra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078484.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104509 95104785 - Tpra1 protein_coding retained_intron MGP_C3HHeJ_T0078485.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104644 95112655 - Tpra1 protein_coding processed_transcript MGP_C3HHeJ_T0078486.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104780 95112650 - MGP_C3HHeJ_P0078486 Tpra1 protein_coding protein_coding MGP_C3HHeJ_T0078487.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95104796 95112640 - MGP_C3HHeJ_P0078487 Tpra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078488.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95105464 95106807 - Tpra1 protein_coding retained_intron MGP_C3HHeJ_T0078489.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95105480 95106807 - Tpra1 protein_coding processed_transcript MGP_C3HHeJ_T0078490.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95105593 95112693 - Tpra1 protein_coding processed_transcript MGP_C3HHeJ_T0078491.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95105706 95109358 - Tpra1 protein_coding processed_transcript MGP_C3HHeJ_T0078492.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95107234 95109037 - Tpra1 protein_coding processed_transcript MGP_C3HHeJ_T0078493.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95108427 95112675 - Tpra1 protein_coding processed_transcript MGP_C3HHeJ_T0078494.1 MGP_C3HHeJ_G0030714.1 mouse_genomes_project 6 95108894 95112675 - Tpra1 protein_coding retained_intron MGP_C3HHeJ_T0079011.1 MGP_C3HHeJ_G0030809.1 mouse_genomes_project 6 101135218 101138885 + MGP_C3HHeJ_P0079011 Ino80b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079012.1 MGP_C3HHeJ_G0030809.1 mouse_genomes_project 6 101135218 101138885 + MGP_C3HHeJ_P0079012 Ino80b protein_coding protein_coding MGP_C3HHeJ_T0079013.1 MGP_C3HHeJ_G0030809.1 mouse_genomes_project 6 101135620 101138822 + MGP_C3HHeJ_P0079013 Ino80b protein_coding protein_coding MGP_C3HHeJ_T0079014.1 MGP_C3HHeJ_G0030809.1 mouse_genomes_project 6 101135781 101136237 + Ino80b protein_coding retained_intron MGP_C3HHeJ_T0076876.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40700969 40742920 - MGP_C3HHeJ_P0076876 Tcaf1 protein_coding protein_coding MGP_C3HHeJ_T0076877.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40702909 40725919 - MGP_C3HHeJ_P0076877 Tcaf1 protein_coding protein_coding MGP_C3HHeJ_T0076878.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40703996 40725891 - MGP_C3HHeJ_P0076878 Tcaf1 protein_coding protein_coding MGP_C3HHeJ_T0076879.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40709662 40725835 - Tcaf1 protein_coding retained_intron MGP_C3HHeJ_T0076880.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40711992 40742903 - Tcaf1 protein_coding processed_transcript MGP_C3HHeJ_T0076881.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40718070 40742903 - Tcaf1 protein_coding retained_intron MGP_C3HHeJ_T0076882.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40723130 40725840 - Tcaf1 protein_coding processed_transcript MGP_C3HHeJ_T0076883.1 MGP_C3HHeJ_G0030355.1 mouse_genomes_project 6 40741928 40742904 - Tcaf1 protein_coding processed_transcript MGP_C3HHeJ_T0000295.1 MGP_C3HHeJ_G0000245.1 mouse_genomes_project 6 116763200 116763964 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015324.1 MGP_C3HHeJ_G0013428.1 mouse_genomes_project 6 112840321 112840899 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008513.1 MGP_C3HHeJ_G0006876.1 mouse_genomes_project 6 49916650 49917904 - 0610033M10Rik lincRNA lincRNA MGP_C3HHeJ_T0008514.1 MGP_C3HHeJ_G0006876.1 mouse_genomes_project 6 49916889 49917718 - 0610033M10Rik lincRNA lincRNA MGP_C3HHeJ_T0075965.1 MGP_C3HHeJ_G0030157.1 mouse_genomes_project 6 10762898 10769536 - MGP_C3HHeJ_P0075965 Gpr85 protein_coding protein_coding MGP_C3HHeJ_T0075966.1 MGP_C3HHeJ_G0030157.1 mouse_genomes_project 6 10763508 10768025 - MGP_C3HHeJ_P0075966 Gpr85 protein_coding protein_coding MGP_C3HHeJ_T0075967.1 MGP_C3HHeJ_G0030157.1 mouse_genomes_project 6 10763517 10765682 - MGP_C3HHeJ_P0075967 Gpr85 protein_coding protein_coding MGP_C3HHeJ_T0075968.1 MGP_C3HHeJ_G0030157.1 mouse_genomes_project 6 10766514 10769089 - Gpr85 protein_coding processed_transcript MGP_C3HHeJ_T0015261.1 MGP_C3HHeJ_G0013365.1 mouse_genomes_project 6 87818761 87819950 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008690.1 MGP_C3HHeJ_G0007012.1 mouse_genomes_project 6 148677261 148683317 + 2010013B24Rik lincRNA lincRNA MGP_C3HHeJ_T0077409.1 MGP_C3HHeJ_G0030499.1 mouse_genomes_project 6 56528093 56564802 + MGP_C3HHeJ_P0077409 Lancl2 protein_coding protein_coding MGP_C3HHeJ_T0077410.1 MGP_C3HHeJ_G0030499.1 mouse_genomes_project 6 56528189 56563845 + MGP_C3HHeJ_P0077410 Lancl2 protein_coding protein_coding MGP_C3HHeJ_T0077411.1 MGP_C3HHeJ_G0030499.1 mouse_genomes_project 6 56528640 56564801 + MGP_C3HHeJ_P0077411 Lancl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005019.1 MGP_C3HHeJ_G0004276.1 mouse_genomes_project 6 129842500 129843850 + Gm42738 antisense antisense MGP_C3HHeJ_T0080701.1 MGP_C3HHeJ_G0031204.1 mouse_genomes_project 6 150894896 150932477 + MGP_C3HHeJ_P0080701 Ccdc91 protein_coding protein_coding MGP_C3HHeJ_T0080702.1 MGP_C3HHeJ_G0031204.1 mouse_genomes_project 6 150894939 151058563 + MGP_C3HHeJ_P0080702 Ccdc91 protein_coding protein_coding MGP_C3HHeJ_T0080703.1 MGP_C3HHeJ_G0031204.1 mouse_genomes_project 6 150895059 150962334 + MGP_C3HHeJ_P0080703 Ccdc91 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080704.1 MGP_C3HHeJ_G0031204.1 mouse_genomes_project 6 150959633 150971068 + Ccdc91 protein_coding processed_transcript MGP_C3HHeJ_T0004940.1 MGP_C3HHeJ_G0004224.1 mouse_genomes_project 6 95298927 95308377 + Gm26588 antisense antisense MGP_C3HHeJ_T0004941.1 MGP_C3HHeJ_G0004224.1 mouse_genomes_project 6 95300287 95305557 + Gm26588 antisense antisense MGP_C3HHeJ_T0010698.1 MGP_C3HHeJ_G0008831.1 mouse_genomes_project 6 78075213 78075291 - Gm25570 miRNA miRNA MGP_C3HHeJ_T0008693.1 MGP_C3HHeJ_G0007015.1 mouse_genomes_project 6 150066844 150075197 + 4930479D17Rik lincRNA lincRNA MGP_C3HHeJ_T0080164.1 MGP_C3HHeJ_G0031087.1 mouse_genomes_project 6 135445469 135446399 - MGP_C3HHeJ_P0080164 Tas2r122 protein_coding protein_coding MGP_C3HHeJ_T0015412.1 MGP_C3HHeJ_G0013516.1 mouse_genomes_project 6 129226562 129227001 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079808.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127010643 127052480 + MGP_C3HHeJ_P0079808 Chd4 protein_coding protein_coding MGP_C3HHeJ_T0079809.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127010643 127052474 + MGP_C3HHeJ_P0079809 Chd4 protein_coding protein_coding MGP_C3HHeJ_T0079810.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127010824 127052480 + MGP_C3HHeJ_P0079810 Chd4 protein_coding protein_coding MGP_C3HHeJ_T0079811.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127010839 127012034 + Chd4 protein_coding retained_intron MGP_C3HHeJ_T0079812.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127011231 127015167 + MGP_C3HHeJ_P0079812 Chd4 protein_coding protein_coding MGP_C3HHeJ_T0079813.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127030973 127032054 + Chd4 protein_coding retained_intron MGP_C3HHeJ_T0079814.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127031001 127041835 + MGP_C3HHeJ_P0079814 Chd4 protein_coding protein_coding MGP_C3HHeJ_T0079815.1 MGP_C3HHeJ_G0030986.1 mouse_genomes_project 6 127039654 127040758 + Chd4 protein_coding retained_intron MGP_C3HHeJ_T0002044.1 MGP_C3HHeJ_G0001965.1 mouse_genomes_project 6 97233343 97234786 - TEC TEC MGP_C3HHeJ_T0002458.1 MGP_C3HHeJ_G0002374.1 mouse_genomes_project 6 39563936 39563948 + MGP_C3HHeJ_P0002458 Trbd1 TR_D_gene TR_D_gene MGP_C3HHeJ_T0077253.1 MGP_C3HHeJ_G0030451.1 mouse_genomes_project 6 52478947 52585546 - MGP_C3HHeJ_P0077253 Cpvl protein_coding protein_coding MGP_C3HHeJ_T0077254.1 MGP_C3HHeJ_G0030451.1 mouse_genomes_project 6 52479047 52585537 - MGP_C3HHeJ_P0077254 Cpvl protein_coding protein_coding MGP_C3HHeJ_T0077255.1 MGP_C3HHeJ_G0030451.1 mouse_genomes_project 6 52479047 52585537 - MGP_C3HHeJ_P0077255 Cpvl protein_coding protein_coding MGP_C3HHeJ_T0004926.1 MGP_C3HHeJ_G0004215.1 mouse_genomes_project 6 85452044 85582959 - Gm32592 antisense antisense MGP_C3HHeJ_T0102142.1 MGP_C3HHeJ_G0040106.1 mouse_genomes_project 6 136461313 136463335 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004847.1 MGP_C3HHeJ_G0004155.1 mouse_genomes_project 6 28146270 28149153 - Gm13781 antisense antisense MGP_C3HHeJ_T0002111.1 MGP_C3HHeJ_G0002032.1 mouse_genomes_project 6 130475899 130477424 + TEC TEC MGP_C3HHeJ_T0099518.1 MGP_C3HHeJ_G0037712.1 mouse_genomes_project 6 52036817 52036981 + Gm25818 snRNA snRNA MGP_C3HHeJ_T0077073.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47246797 47248209 + MGP_C3HHeJ_P0077073 Tmem176a protein_coding protein_coding MGP_C3HHeJ_T0077074.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47247390 47251748 + MGP_C3HHeJ_P0077074 Tmem176a protein_coding protein_coding MGP_C3HHeJ_T0077075.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47247400 47252887 + MGP_C3HHeJ_P0077075 Tmem176a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077076.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47247426 47251240 + Tmem176a protein_coding retained_intron MGP_C3HHeJ_T0077077.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47247461 47251244 + MGP_C3HHeJ_P0077077 Tmem176a protein_coding protein_coding MGP_C3HHeJ_T0077078.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47247648 47250654 + MGP_C3HHeJ_P0077078 Tmem176a protein_coding protein_coding MGP_C3HHeJ_T0077079.1 MGP_C3HHeJ_G0030408.1 mouse_genomes_project 6 47248467 47249471 + MGP_C3HHeJ_P0077079 Tmem176a protein_coding protein_coding MGP_C3HHeJ_T0015375.1 MGP_C3HHeJ_G0013479.1 mouse_genomes_project 6 120020384 120020613 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079189.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111878201 111893102 - MGP_C3HHeJ_P0079189 Capg protein_coding protein_coding MGP_C3HHeJ_T0079190.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111878201 111898686 - MGP_C3HHeJ_P0079190 Capg protein_coding protein_coding MGP_C3HHeJ_T0079191.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111878203 111898540 - MGP_C3HHeJ_P0079191 Capg protein_coding protein_coding MGP_C3HHeJ_T0079192.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111884143 111889440 - MGP_C3HHeJ_P0079192 Capg protein_coding protein_coding MGP_C3HHeJ_T0079193.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111884553 111886399 - Capg protein_coding retained_intron MGP_C3HHeJ_T0079194.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111884630 111894442 - MGP_C3HHeJ_P0079194 Capg protein_coding protein_coding MGP_C3HHeJ_T0079195.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111884659 111892943 - Capg protein_coding retained_intron MGP_C3HHeJ_T0079196.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111886125 111897308 - MGP_C3HHeJ_P0079196 Capg protein_coding protein_coding MGP_C3HHeJ_T0079197.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111886511 111892924 - MGP_C3HHeJ_P0079197 Capg protein_coding protein_coding MGP_C3HHeJ_T0079198.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111886553 111892723 - MGP_C3HHeJ_P0079198 Capg protein_coding protein_coding MGP_C3HHeJ_T0079199.1 MGP_C3HHeJ_G0030852.1 mouse_genomes_project 6 111886742 111892917 - Capg protein_coding retained_intron MGP_C3HHeJ_T0076917.1 MGP_C3HHeJ_G0030374.1 mouse_genomes_project 6 41468570 41806727 - MGP_C3HHeJ_P0076917 Tpk1 protein_coding protein_coding MGP_C3HHeJ_T0076918.1 MGP_C3HHeJ_G0030374.1 mouse_genomes_project 6 41468642 41765248 - Tpk1 protein_coding processed_transcript MGP_C3HHeJ_T0076919.1 MGP_C3HHeJ_G0030374.1 mouse_genomes_project 6 41468843 41806624 - MGP_C3HHeJ_P0076919 Tpk1 protein_coding protein_coding MGP_C3HHeJ_T0076920.1 MGP_C3HHeJ_G0030374.1 mouse_genomes_project 6 41470411 41603429 - Tpk1 protein_coding processed_transcript MGP_C3HHeJ_T0076921.1 MGP_C3HHeJ_G0030374.1 mouse_genomes_project 6 41724526 41806668 - Tpk1 protein_coding processed_transcript MGP_C3HHeJ_T0076922.1 MGP_C3HHeJ_G0030374.1 mouse_genomes_project 6 41725978 41806330 - Tpk1 protein_coding processed_transcript MGP_C3HHeJ_T0079177.1 MGP_C3HHeJ_G0030850.1 mouse_genomes_project 6 111832416 111842719 - MGP_C3HHeJ_P0079177 Retsat protein_coding protein_coding MGP_C3HHeJ_T0079178.1 MGP_C3HHeJ_G0030850.1 mouse_genomes_project 6 111833404 111834875 - MGP_C3HHeJ_P0079178 Retsat protein_coding protein_coding MGP_C3HHeJ_T0079179.1 MGP_C3HHeJ_G0030850.1 mouse_genomes_project 6 111833465 111842566 - MGP_C3HHeJ_P0079179 Retsat protein_coding protein_coding MGP_C3HHeJ_T0079180.1 MGP_C3HHeJ_G0030850.1 mouse_genomes_project 6 111833465 111842566 - MGP_C3HHeJ_P0079180 Retsat protein_coding protein_coding MGP_C3HHeJ_T0079181.1 MGP_C3HHeJ_G0030850.1 mouse_genomes_project 6 111833635 111834202 - MGP_C3HHeJ_P0079181 Retsat protein_coding protein_coding MGP_C3HHeJ_T0079182.1 MGP_C3HHeJ_G0030850.1 mouse_genomes_project 6 111834457 111836818 - Retsat protein_coding processed_transcript MGP_C3HHeJ_T0010695.1 MGP_C3HHeJ_G0008828.1 mouse_genomes_project 6 69804961 69805041 - Gm24387 miRNA miRNA MGP_C3HHeJ_T0080117.1 MGP_C3HHeJ_G0031063.1 mouse_genomes_project 6 132180568 132184942 - Klra5 protein_coding retained_intron MGP_C3HHeJ_T0080118.1 MGP_C3HHeJ_G0031063.1 mouse_genomes_project 6 132180568 132198695 - MGP_C3HHeJ_P0080118 Klra5 protein_coding protein_coding MGP_C3HHeJ_T0080119.1 MGP_C3HHeJ_G0031063.1 mouse_genomes_project 6 132180568 132194446 - MGP_C3HHeJ_P0080119 Klra5 protein_coding protein_coding MGP_C3HHeJ_T0080120.1 MGP_C3HHeJ_G0031063.1 mouse_genomes_project 6 132180731 132194388 - MGP_C3HHeJ_P0080120 Klra5 protein_coding protein_coding MGP_C3HHeJ_T0098167.1 MGP_C3HHeJ_G0036379.1 mouse_genomes_project 6 135285524 135285645 + n-R5s166 rRNA rRNA MGP_C3HHeJ_T0008682.1 MGP_C3HHeJ_G0007008.1 mouse_genomes_project 6 146525599 146575677 + D6Ertd474e lincRNA lincRNA MGP_C3HHeJ_T0008683.1 MGP_C3HHeJ_G0007008.1 mouse_genomes_project 6 146525599 146529312 + D6Ertd474e lincRNA lincRNA MGP_C3HHeJ_T0008684.1 MGP_C3HHeJ_G0007008.1 mouse_genomes_project 6 146525604 146576042 + D6Ertd474e lincRNA lincRNA MGP_C3HHeJ_T0008685.1 MGP_C3HHeJ_G0007008.1 mouse_genomes_project 6 146525604 146577241 + D6Ertd474e lincRNA lincRNA MGP_C3HHeJ_T0008686.1 MGP_C3HHeJ_G0007008.1 mouse_genomes_project 6 146566094 146576006 + D6Ertd474e lincRNA lincRNA MGP_C3HHeJ_T0077834.1 MGP_C3HHeJ_G0030583.1 mouse_genomes_project 6 67907674 67917988 + MGP_C3HHeJ_P0077834 Timp4 protein_coding protein_coding MGP_C3HHeJ_T0077835.1 MGP_C3HHeJ_G0030583.1 mouse_genomes_project 6 67908029 67913049 + MGP_C3HHeJ_P0077835 Timp4 protein_coding protein_coding MGP_C3HHeJ_T0008431.1 MGP_C3HHeJ_G0006821.1 mouse_genomes_project 6 13755807 13768225 + Gm36669 lincRNA lincRNA MGP_C3HHeJ_T0015282.1 MGP_C3HHeJ_G0013386.1 mouse_genomes_project 6 98208389 98209166 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100772.1 MGP_C3HHeJ_G0038966.1 mouse_genomes_project 6 86168105 86168235 + Gm25852 snoRNA snoRNA MGP_C3HHeJ_T0078178.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84130045 84219943 + Foxp1 protein_coding processed_transcript MGP_C3HHeJ_T0078179.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84130119 84401942 + Foxp1 protein_coding processed_transcript MGP_C3HHeJ_T0078180.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84131604 84504120 + MGP_C3HHeJ_P0078180 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078181.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84131769 84745463 + MGP_C3HHeJ_P0078181 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078183.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84218983 84353918 + Foxp1 protein_coding processed_transcript MGP_C3HHeJ_T0078184.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84219833 84744562 + MGP_C3HHeJ_P0078184 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078185.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84219833 84749310 + MGP_C3HHeJ_P0078185 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078186.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84219833 84744562 + MGP_C3HHeJ_P0078186 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078187.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84395747 84505109 + Foxp1 protein_coding retained_intron MGP_C3HHeJ_T0078188.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84395747 84505109 + Foxp1 protein_coding retained_intron MGP_C3HHeJ_T0078189.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84395764 84514930 + Foxp1 protein_coding processed_transcript MGP_C3HHeJ_T0078190.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84395764 84749314 + MGP_C3HHeJ_P0078190 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078191.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84413938 84595163 + MGP_C3HHeJ_P0078191 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078192.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078192 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078193.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078193 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078194.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078194 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078195.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078195 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078196.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078196 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078197.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078197 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078198.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84504030 84744562 + MGP_C3HHeJ_P0078198 Foxp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078199.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84574402 84664692 + MGP_C3HHeJ_P0078199 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078200.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84627230 84671232 + MGP_C3HHeJ_P0078200 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078201.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84627247 84664681 + MGP_C3HHeJ_P0078201 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078202.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84645094 84671425 + MGP_C3HHeJ_P0078202 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078203.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84645723 84729118 + MGP_C3HHeJ_P0078203 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078204.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84645770 84667940 + Foxp1 protein_coding processed_transcript MGP_C3HHeJ_T0078205.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84645777 84744562 + MGP_C3HHeJ_P0078205 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078206.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84646045 84658049 + MGP_C3HHeJ_P0078206 Foxp1 protein_coding protein_coding MGP_C3HHeJ_T0078207.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84670944 84722451 + Foxp1 protein_coding retained_intron MGP_C3HHeJ_T0078208.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84739106 84744481 + Foxp1 protein_coding retained_intron MGP_C3HHeJ_T0078209.1 MGP_C3HHeJ_G0030648.1 mouse_genomes_project 6 84744866 84749237 + Foxp1 protein_coding processed_transcript MGP_C3HHeJ_T0002623.1 MGP_C3HHeJ_G0002516.1 mouse_genomes_project 6 39187464 39187957 + MGP_C3HHeJ_P0002623 Trbv21 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002624.1 MGP_C3HHeJ_G0002516.1 mouse_genomes_project 6 39187669 39187959 + MGP_C3HHeJ_P0002624 Trbv21 TR_V_gene TR_V_gene MGP_C3HHeJ_T0010713.1 MGP_C3HHeJ_G0008846.1 mouse_genomes_project 6 102391416 102391494 + Mir468 miRNA miRNA MGP_C3HHeJ_T0078789.1 MGP_C3HHeJ_G0030766.1 mouse_genomes_project 6 98246074 98251168 + MGP_C3HHeJ_P0078789 Nat8f4 protein_coding protein_coding MGP_C3HHeJ_T0078790.1 MGP_C3HHeJ_G0030766.1 mouse_genomes_project 6 98247480 98251168 + MGP_C3HHeJ_P0078790 Nat8f4 protein_coding protein_coding MGP_C3HHeJ_T0015281.1 MGP_C3HHeJ_G0013385.1 mouse_genomes_project 6 97845728 97846736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077215.1 MGP_C3HHeJ_G0030444.1 mouse_genomes_project 6 50811287 50814398 - MGP_C3HHeJ_P0077215 Hoxa13 protein_coding protein_coding MGP_C3HHeJ_T0077216.1 MGP_C3HHeJ_G0030444.1 mouse_genomes_project 6 50812446 50814440 - MGP_C3HHeJ_P0077216 Hoxa13 protein_coding protein_coding MGP_C3HHeJ_T0077217.1 MGP_C3HHeJ_G0030444.1 mouse_genomes_project 6 50812464 50814398 - Hoxa13 protein_coding processed_transcript MGP_C3HHeJ_T0077218.1 MGP_C3HHeJ_G0030444.1 mouse_genomes_project 6 50812464 50814398 - Hoxa13 protein_coding processed_transcript MGP_C3HHeJ_T0077219.1 MGP_C3HHeJ_G0030444.1 mouse_genomes_project 6 50812464 50814398 - Hoxa13 protein_coding processed_transcript MGP_C3HHeJ_T0077220.1 MGP_C3HHeJ_G0030444.1 mouse_genomes_project 6 50812464 50814398 - MGP_C3HHeJ_P0077220 Hoxa13 protein_coding protein_coding MGP_C3HHeJ_T0077331.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54118733 54166780 + MGP_C3HHeJ_P0077331 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077332.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54118783 54169320 + MGP_C3HHeJ_P0077332 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077333.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54118812 54146101 + MGP_C3HHeJ_P0077333 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077334.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54118932 54126982 + MGP_C3HHeJ_P0077334 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077335.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54126972 54165303 + MGP_C3HHeJ_P0077335 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077336.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54126972 54165046 + MGP_C3HHeJ_P0077336 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077337.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54126972 54165046 + MGP_C3HHeJ_P0077337 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0077338.1 MGP_C3HHeJ_G0030468.1 mouse_genomes_project 6 54126972 54165046 + MGP_C3HHeJ_P0077338 Adcyap1r1 protein_coding protein_coding MGP_C3HHeJ_T0015158.1 MGP_C3HHeJ_G0013262.1 mouse_genomes_project 6 47592993 47593195 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098298.1 MGP_C3HHeJ_G0036510.1 mouse_genomes_project 6 51601185 51601324 - Gm26215 scaRNA scaRNA MGP_C3HHeJ_T0002629.1 MGP_C3HHeJ_G0002519.1 mouse_genomes_project 6 39261049 39261537 + MGP_C3HHeJ_P0002629 Trbv29 TR_V_gene TR_V_gene MGP_C3HHeJ_T0015219.1 MGP_C3HHeJ_G0013323.1 mouse_genomes_project 6 69874365 69877733 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002008.1 MGP_C3HHeJ_G0001929.1 mouse_genomes_project 6 91863947 91865878 - TEC TEC MGP_C3HHeJ_T0076826.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40290673 40309216 + MGP_C3HHeJ_P0076826 Casp2 protein_coding protein_coding MGP_C3HHeJ_T0076827.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40290744 40295828 + Casp2 protein_coding retained_intron MGP_C3HHeJ_T0076828.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40290808 40307200 + MGP_C3HHeJ_P0076828 Casp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076829.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40293079 40293719 + Casp2 protein_coding processed_transcript MGP_C3HHeJ_T0076830.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40293698 40296313 + Casp2 protein_coding retained_intron MGP_C3HHeJ_T0076831.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40295990 40306605 + Casp2 protein_coding processed_transcript MGP_C3HHeJ_T0076832.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40303194 40307241 + Casp2 protein_coding retained_intron MGP_C3HHeJ_T0076833.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40306344 40307198 + Casp2 protein_coding processed_transcript MGP_C3HHeJ_T0076834.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40306488 40307349 + Casp2 protein_coding processed_transcript MGP_C3HHeJ_T0076835.1 MGP_C3HHeJ_G0030341.1 mouse_genomes_project 6 40306514 40307475 + Casp2 protein_coding processed_transcript MGP_C3HHeJ_T0015068.1 MGP_C3HHeJ_G0013172.1 mouse_genomes_project 6 9785866 9788264 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008462.1 MGP_C3HHeJ_G0006841.1 mouse_genomes_project 6 29207828 29209576 + Gm6117 lincRNA lincRNA MGP_C3HHeJ_T0002080.1 MGP_C3HHeJ_G0002001.1 mouse_genomes_project 6 111684886 111687802 + TEC TEC MGP_C3HHeJ_T0079200.1 MGP_C3HHeJ_G0030853.1 mouse_genomes_project 6 111922814 111927084 + Sh2d6 protein_coding retained_intron MGP_C3HHeJ_T0079201.1 MGP_C3HHeJ_G0030853.1 mouse_genomes_project 6 111923798 111930817 + MGP_C3HHeJ_P0079201 Sh2d6 protein_coding protein_coding MGP_C3HHeJ_T0079202.1 MGP_C3HHeJ_G0030853.1 mouse_genomes_project 6 111923821 111930817 + MGP_C3HHeJ_P0079202 Sh2d6 protein_coding protein_coding MGP_C3HHeJ_T0079203.1 MGP_C3HHeJ_G0030853.1 mouse_genomes_project 6 111923910 111930819 + MGP_C3HHeJ_P0079203 Sh2d6 protein_coding protein_coding MGP_C3HHeJ_T0079204.1 MGP_C3HHeJ_G0030853.1 mouse_genomes_project 6 111924471 111929164 + Sh2d6 protein_coding processed_transcript MGP_C3HHeJ_T0079205.1 MGP_C3HHeJ_G0030853.1 mouse_genomes_project 6 111929200 111930829 + Sh2d6 protein_coding processed_transcript MGP_C3HHeJ_T0078291.1 MGP_C3HHeJ_G0030666.1 mouse_genomes_project 6 90906099 90923309 + Adamts9 protein_coding processed_transcript MGP_C3HHeJ_T0078292.1 MGP_C3HHeJ_G0030666.1 mouse_genomes_project 6 90906099 91081659 + MGP_C3HHeJ_P0078292 Adamts9 protein_coding protein_coding MGP_C3HHeJ_T0078293.1 MGP_C3HHeJ_G0030666.1 mouse_genomes_project 6 90907461 91080284 + MGP_C3HHeJ_P0078293 Adamts9 protein_coding protein_coding MGP_C3HHeJ_T0078295.1 MGP_C3HHeJ_G0030666.1 mouse_genomes_project 6 90991653 91007333 + Adamts9 protein_coding retained_intron MGP_C3HHeJ_T0078296.1 MGP_C3HHeJ_G0030666.1 mouse_genomes_project 6 90991663 91060594 + Adamts9 protein_coding retained_intron MGP_C3HHeJ_T0078297.1 MGP_C3HHeJ_G0030666.1 mouse_genomes_project 6 90997122 91001049 + Adamts9 protein_coding retained_intron MGP_C3HHeJ_T0080579.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148543794 148574618 - Casc1 protein_coding retained_intron MGP_C3HHeJ_T0080580.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148543794 148580244 - MGP_C3HHeJ_P0080580 Casc1 protein_coding protein_coding MGP_C3HHeJ_T0080581.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148543794 148580065 - MGP_C3HHeJ_P0080581 Casc1 protein_coding protein_coding MGP_C3HHeJ_T0080582.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148543902 148580148 - MGP_C3HHeJ_P0080582 Casc1 protein_coding protein_coding MGP_C3HHeJ_T0080583.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148559507 148580173 - Casc1 protein_coding retained_intron MGP_C3HHeJ_T0080584.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148562163 148580143 - Casc1 protein_coding processed_transcript MGP_C3HHeJ_T0080585.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148572164 148580153 - Casc1 protein_coding retained_intron MGP_C3HHeJ_T0080586.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148573544 148580183 - Casc1 protein_coding retained_intron MGP_C3HHeJ_T0080587.1 MGP_C3HHeJ_G0031181.1 mouse_genomes_project 6 148577256 148580279 - Casc1 protein_coding retained_intron MGP_C3HHeJ_T0099511.1 MGP_C3HHeJ_G0037705.1 mouse_genomes_project 6 35937405 35937509 + Gm23231 snRNA snRNA MGP_C3HHeJ_T0077192.1 MGP_C3HHeJ_G0030436.1 mouse_genomes_project 6 50718785 50764434 - MGP_C3HHeJ_P0077192 Hoxa3 protein_coding protein_coding MGP_C3HHeJ_T0077193.1 MGP_C3HHeJ_G0030436.1 mouse_genomes_project 6 50722291 50734149 - MGP_C3HHeJ_P0077193 Hoxa3 protein_coding protein_coding MGP_C3HHeJ_T0077194.1 MGP_C3HHeJ_G0030436.1 mouse_genomes_project 6 50730832 50735164 - Hoxa3 protein_coding processed_transcript MGP_C3HHeJ_T0077196.1 MGP_C3HHeJ_G0030436.1 mouse_genomes_project 6 50750544 50764655 - Hoxa3 protein_coding retained_intron MGP_C3HHeJ_T0002610.1 MGP_C3HHeJ_G0002504.1 mouse_genomes_project 6 39039781 39040253 + MGP_C3HHeJ_P0002610 Trbv5 TR_V_gene TR_V_gene MGP_C3HHeJ_T0008427.1 MGP_C3HHeJ_G0006818.1 mouse_genomes_project 6 10356080 10358698 + 1700016P04Rik lincRNA lincRNA MGP_C3HHeJ_T0079606.1 MGP_C3HHeJ_G0030949.1 mouse_genomes_project 6 125592292 125642469 - MGP_C3HHeJ_P0079606 protein_coding protein_coding MGP_C3HHeJ_T0015123.1 MGP_C3HHeJ_G0013227.1 mouse_genomes_project 6 37760356 37760930 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011556.1 MGP_C3HHeJ_G0009689.1 mouse_genomes_project 6 50816161 50816539 + Gm27985 misc_RNA misc_RNA MGP_C3HHeJ_T0076472.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 30917088 31659914 + MGP_C3HHeJ_P0076472 Exoc4 protein_coding protein_coding MGP_C3HHeJ_T0076473.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 30917131 31022760 + Exoc4 protein_coding retained_intron MGP_C3HHeJ_T0076474.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 30917131 31498523 + Exoc4 protein_coding processed_transcript MGP_C3HHeJ_T0076475.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 30917131 31153673 + MGP_C3HHeJ_P0076475 Exoc4 protein_coding protein_coding MGP_C3HHeJ_T0076476.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 30917135 31257500 + MGP_C3HHeJ_P0076476 Exoc4 protein_coding protein_coding MGP_C3HHeJ_T0076477.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 30917139 30987980 + Exoc4 protein_coding processed_transcript MGP_C3HHeJ_T0076478.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 31002121 31181891 + Exoc4 protein_coding processed_transcript MGP_C3HHeJ_T0076479.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 31003183 31019922 + Exoc4 protein_coding retained_intron MGP_C3HHeJ_T0076480.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 31379595 31545309 + Exoc4 protein_coding processed_transcript MGP_C3HHeJ_T0076481.1 MGP_C3HHeJ_G0030249.1 mouse_genomes_project 6 31545248 31557131 + Exoc4 protein_coding processed_transcript MGP_C3HHeJ_T0004838.1 MGP_C3HHeJ_G0004147.1 mouse_genomes_project 6 14203072 14393225 - Gm15581 antisense antisense MGP_C3HHeJ_T0080168.1 MGP_C3HHeJ_G0031091.1 mouse_genomes_project 6 135520574 135521558 - MGP_C3HHeJ_P0080168 Tas2r136 protein_coding protein_coding MGP_C3HHeJ_T0080169.1 MGP_C3HHeJ_G0031092.1 mouse_genomes_project 6 135563948 135564899 + MGP_C3HHeJ_P0080169 Tas2r109 protein_coding protein_coding MGP_C3HHeJ_T0100788.1 MGP_C3HHeJ_G0038982.1 mouse_genomes_project 6 117185619 117185755 + Gm24911 snoRNA snoRNA MGP_C3HHeJ_T0015427.1 MGP_C3HHeJ_G0013531.1 mouse_genomes_project 6 131821085 131821527 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015360.1 MGP_C3HHeJ_G0013464.1 mouse_genomes_project 6 118745247 118745473 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001989.1 MGP_C3HHeJ_G0001910.1 mouse_genomes_project 6 82232781 82233669 + TEC TEC MGP_C3HHeJ_T0079609.1 MGP_C3HHeJ_G0030952.1 mouse_genomes_project 6 126138848 126164315 + MGP_C3HHeJ_P0079609 Cd163 protein_coding protein_coding MGP_C3HHeJ_T0079610.1 MGP_C3HHeJ_G0030952.1 mouse_genomes_project 6 126138892 126164315 + MGP_C3HHeJ_P0079610 Cd163 protein_coding protein_coding MGP_C3HHeJ_T0079611.1 MGP_C3HHeJ_G0030952.1 mouse_genomes_project 6 126140849 126162876 + MGP_C3HHeJ_P0079611 Cd163 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079612.1 MGP_C3HHeJ_G0030952.1 mouse_genomes_project 6 126154274 126164307 + Cd163 protein_coding retained_intron MGP_C3HHeJ_T0002059.1 MGP_C3HHeJ_G0001980.1 mouse_genomes_project 6 103494791 103497460 - TEC TEC MGP_C3HHeJ_T0079176.1 MGP_C3HHeJ_G0030849.1 mouse_genomes_project 6 111824266 111832410 + MGP_C3HHeJ_P0079176 Tgoln1 protein_coding protein_coding MGP_C3HHeJ_T0015079.1 MGP_C3HHeJ_G0013183.1 mouse_genomes_project 6 14731947 14733203 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100743.1 MGP_C3HHeJ_G0038937.1 mouse_genomes_project 6 22411976 22412108 - Gm24443 snoRNA snoRNA MGP_C3HHeJ_T0077502.1 MGP_C3HHeJ_G0030525.1 mouse_genomes_project 6 62473152 62497978 - MGP_C3HHeJ_P0077502 Il17ra protein_coding protein_coding MGP_C3HHeJ_T0077503.1 MGP_C3HHeJ_G0030525.1 mouse_genomes_project 6 62477012 62497978 - Il17ra protein_coding retained_intron MGP_C3HHeJ_T0077504.1 MGP_C3HHeJ_G0030525.1 mouse_genomes_project 6 62480709 62487145 - Il17ra protein_coding processed_transcript MGP_C3HHeJ_T0079623.1 MGP_C3HHeJ_G0030955.1 mouse_genomes_project 6 126272251 126305357 - MGP_C3HHeJ_P0079623 Clstn3 protein_coding protein_coding MGP_C3HHeJ_T0079624.1 MGP_C3HHeJ_G0030955.1 mouse_genomes_project 6 126272804 126275004 - Clstn3 protein_coding processed_transcript MGP_C3HHeJ_T0079625.1 MGP_C3HHeJ_G0030955.1 mouse_genomes_project 6 126278272 126280380 - Clstn3 protein_coding retained_intron MGP_C3HHeJ_T0079626.1 MGP_C3HHeJ_G0030955.1 mouse_genomes_project 6 126280404 126291019 - Clstn3 protein_coding retained_intron MGP_C3HHeJ_T0079627.1 MGP_C3HHeJ_G0030955.1 mouse_genomes_project 6 126296815 126298758 - Clstn3 protein_coding processed_transcript MGP_C3HHeJ_T0079628.1 MGP_C3HHeJ_G0030955.1 mouse_genomes_project 6 126302482 126304974 - MGP_C3HHeJ_P0079628 Clstn3 protein_coding protein_coding MGP_C3HHeJ_T0001909.1 MGP_C3HHeJ_G0001831.1 mouse_genomes_project 6 28767119 28769411 - TEC TEC MGP_C3HHeJ_T0078439.1 MGP_C3HHeJ_G0030696.1 mouse_genomes_project 6 93679369 93680452 - MGP_C3HHeJ_P0078439 Vmn1r54 protein_coding protein_coding MGP_C3HHeJ_T0015211.1 MGP_C3HHeJ_G0013315.1 mouse_genomes_project 6 68397585 68397973 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001946.1 MGP_C3HHeJ_G0001868.1 mouse_genomes_project 6 47687758 47689197 + TEC TEC MGP_C3HHeJ_T0080011.1 MGP_C3HHeJ_G0031029.1 mouse_genomes_project 6 130532314 130542085 - Fkbp4 protein_coding retained_intron MGP_C3HHeJ_T0080012.1 MGP_C3HHeJ_G0031029.1 mouse_genomes_project 6 130532652 130542085 - MGP_C3HHeJ_P0080012 Fkbp4 protein_coding protein_coding MGP_C3HHeJ_T0080013.1 MGP_C3HHeJ_G0031029.1 mouse_genomes_project 6 130536622 130541548 - MGP_C3HHeJ_P0080013 Fkbp4 protein_coding protein_coding MGP_C3HHeJ_T0080014.1 MGP_C3HHeJ_G0031029.1 mouse_genomes_project 6 130537169 130541061 - MGP_C3HHeJ_P0080014 Fkbp4 protein_coding protein_coding MGP_C3HHeJ_T0018039.1 MGP_C3HHeJ_G0015392.1 mouse_genomes_project 6 52585565 52626061 + 4921529L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018040.1 MGP_C3HHeJ_G0015392.1 mouse_genomes_project 6 52585575 52588669 + 4921529L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018041.1 MGP_C3HHeJ_G0015392.1 mouse_genomes_project 6 52585603 52619217 + 4921529L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018042.1 MGP_C3HHeJ_G0015392.1 mouse_genomes_project 6 52619142 52626706 + 4921529L05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0015288.1 MGP_C3HHeJ_G0013392.1 mouse_genomes_project 6 99093223 99093800 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080158.1 MGP_C3HHeJ_G0031082.1 mouse_genomes_project 6 134262783 134263713 - MGP_C3HHeJ_P0080158 Tas2r114 protein_coding protein_coding MGP_C3HHeJ_T0015331.1 MGP_C3HHeJ_G0013435.1 mouse_genomes_project 6 114398660 114400005 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075789.1 MGP_C3HHeJ_G0030121.1 mouse_genomes_project 6 738877 743449 + MGP_C3HHeJ_P0075789 Gng11 protein_coding protein_coding MGP_C3HHeJ_T0002097.1 MGP_C3HHeJ_G0002018.1 mouse_genomes_project 6 122601487 122602996 - TEC TEC MGP_C3HHeJ_T0015327.1 MGP_C3HHeJ_G0013431.1 mouse_genomes_project 6 114159456 114160797 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001892.1 MGP_C3HHeJ_G0001814.1 mouse_genomes_project 6 15154383 15156203 - TEC TEC MGP_C3HHeJ_T0002032.1 MGP_C3HHeJ_G0001953.1 mouse_genomes_project 6 96213531 96214618 - TEC TEC MGP_C3HHeJ_T0002115.1 MGP_C3HHeJ_G0002036.1 mouse_genomes_project 6 131995242 131995627 - TEC TEC MGP_C3HHeJ_T0008559.1 MGP_C3HHeJ_G0006914.1 mouse_genomes_project 6 77803409 77807949 + Gm15631 lincRNA lincRNA MGP_C3HHeJ_T0011562.1 MGP_C3HHeJ_G0009695.1 mouse_genomes_project 6 71291484 71291799 - Gm26362 misc_RNA misc_RNA MGP_C3HHeJ_T0099504.1 MGP_C3HHeJ_G0037698.1 mouse_genomes_project 6 18291686 18291789 + Gm26373 snRNA snRNA MGP_C3HHeJ_T0004840.1 MGP_C3HHeJ_G0004149.1 mouse_genomes_project 6 15315727 15335715 - Gm15592 antisense antisense MGP_C3HHeJ_T0015312.1 MGP_C3HHeJ_G0013416.1 mouse_genomes_project 6 108596911 108597310 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080756.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152459068 152577290 - MGP_C3HHeJ_P0080756 Dennd5b protein_coding protein_coding MGP_C3HHeJ_T0080757.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152485333 152488673 - Dennd5b protein_coding retained_intron MGP_C3HHeJ_T0080758.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152485471 152577148 - Dennd5b protein_coding retained_intron MGP_C3HHeJ_T0080759.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152510377 152515157 - Dennd5b protein_coding retained_intron MGP_C3HHeJ_T0080760.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152541204 152555135 - MGP_C3HHeJ_P0080760 Dennd5b protein_coding protein_coding MGP_C3HHeJ_T0080761.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152541227 152577194 - MGP_C3HHeJ_P0080761 Dennd5b protein_coding protein_coding MGP_C3HHeJ_T0080762.1 MGP_C3HHeJ_G0031211.1 mouse_genomes_project 6 152556247 152559229 - Dennd5b protein_coding retained_intron MGP_C3HHeJ_T0080204.1 MGP_C3HHeJ_G0031110.1 mouse_genomes_project 6 137568292 137637816 + MGP_C3HHeJ_P0080204 Borcs5 protein_coding protein_coding MGP_C3HHeJ_T0080205.1 MGP_C3HHeJ_G0031110.1 mouse_genomes_project 6 137569758 137638633 + MGP_C3HHeJ_P0080205 Borcs5 protein_coding protein_coding MGP_C3HHeJ_T0080206.1 MGP_C3HHeJ_G0031110.1 mouse_genomes_project 6 137569779 137573509 + Borcs5 protein_coding retained_intron MGP_C3HHeJ_T0080207.1 MGP_C3HHeJ_G0031110.1 mouse_genomes_project 6 137570073 137615327 + Borcs5 protein_coding retained_intron MGP_C3HHeJ_T0080208.1 MGP_C3HHeJ_G0031110.1 mouse_genomes_project 6 137628332 137637916 + Borcs5 protein_coding processed_transcript MGP_C3HHeJ_T0005029.1 MGP_C3HHeJ_G0004284.1 mouse_genomes_project 6 137149545 137160096 - Gm17089 antisense antisense MGP_C3HHeJ_T0015132.1 MGP_C3HHeJ_G0013236.1 mouse_genomes_project 6 40539754 40540552 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015317.1 MGP_C3HHeJ_G0013421.1 mouse_genomes_project 6 110907155 110907574 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076249.1 MGP_C3HHeJ_G0030215.1 mouse_genomes_project 6 26813864 26822384 + Fam71f1 protein_coding processed_transcript MGP_C3HHeJ_T0076250.1 MGP_C3HHeJ_G0030215.1 mouse_genomes_project 6 26813864 26832643 + MGP_C3HHeJ_P0076250 Fam71f1 protein_coding protein_coding MGP_C3HHeJ_T0076251.1 MGP_C3HHeJ_G0030215.1 mouse_genomes_project 6 26813881 26832478 + MGP_C3HHeJ_P0076251 Fam71f1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076252.1 MGP_C3HHeJ_G0030215.1 mouse_genomes_project 6 26813881 26832478 + MGP_C3HHeJ_P0076252 Fam71f1 protein_coding protein_coding MGP_C3HHeJ_T0076253.1 MGP_C3HHeJ_G0030215.1 mouse_genomes_project 6 26813923 26832478 + MGP_C3HHeJ_P0076253 Fam71f1 protein_coding protein_coding MGP_C3HHeJ_T0080156.1 MGP_C3HHeJ_G0031080.1 mouse_genomes_project 6 134258473 134259382 - MGP_C3HHeJ_P0080156 Tas2r104 protein_coding protein_coding MGP_C3HHeJ_T0015145.1 MGP_C3HHeJ_G0013249.1 mouse_genomes_project 6 46113588 46113967 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079717.1 MGP_C3HHeJ_G0030972.1 mouse_genomes_project 6 126728150 126731267 + MGP_C3HHeJ_P0079717 Cdca3 protein_coding protein_coding MGP_C3HHeJ_T0079718.1 MGP_C3HHeJ_G0030972.1 mouse_genomes_project 6 126728291 126732304 + MGP_C3HHeJ_P0079718 Cdca3 protein_coding protein_coding MGP_C3HHeJ_T0079719.1 MGP_C3HHeJ_G0030972.1 mouse_genomes_project 6 126728820 126731188 + MGP_C3HHeJ_P0079719 Cdca3 protein_coding protein_coding MGP_C3HHeJ_T0079720.1 MGP_C3HHeJ_G0030972.1 mouse_genomes_project 6 126728838 126732135 + Cdca3 protein_coding retained_intron MGP_C3HHeJ_T0079721.1 MGP_C3HHeJ_G0030972.1 mouse_genomes_project 6 126728966 126730635 + Cdca3 protein_coding retained_intron MGP_C3HHeJ_T0079722.1 MGP_C3HHeJ_G0030972.1 mouse_genomes_project 6 126728978 126731042 + MGP_C3HHeJ_P0079722 Cdca3 protein_coding protein_coding MGP_C3HHeJ_T0002015.1 MGP_C3HHeJ_G0001936.1 mouse_genomes_project 6 92494625 92495826 - TEC TEC MGP_C3HHeJ_T0008681.1 MGP_C3HHeJ_G0007007.1 mouse_genomes_project 6 146382266 146429122 - Gm31108 lincRNA lincRNA MGP_C3HHeJ_T0010663.1 MGP_C3HHeJ_G0008796.1 mouse_genomes_project 6 25359865 25359961 - Mir592 miRNA miRNA MGP_C3HHeJ_T0076022.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14475186 14586969 + MGP_C3HHeJ_P0076022 Met protein_coding protein_coding MGP_C3HHeJ_T0076023.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14475213 14503059 + MGP_C3HHeJ_P0076023 Met protein_coding protein_coding MGP_C3HHeJ_T0076024.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14475493 14552841 + Met protein_coding retained_intron MGP_C3HHeJ_T0076025.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14499116 14584785 + MGP_C3HHeJ_P0076025 Met protein_coding protein_coding MGP_C3HHeJ_T0076026.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14502552 14584785 + MGP_C3HHeJ_P0076026 Met protein_coding protein_coding MGP_C3HHeJ_T0076027.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14547113 14558634 + MGP_C3HHeJ_P0076027 Met protein_coding protein_coding MGP_C3HHeJ_T0076028.1 MGP_C3HHeJ_G0030166.1 mouse_genomes_project 6 14558396 14564813 + MGP_C3HHeJ_P0076028 Met protein_coding protein_coding MGP_C3HHeJ_T0015348.1 MGP_C3HHeJ_G0013452.1 mouse_genomes_project 6 117617337 117617919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010664.1 MGP_C3HHeJ_G0008797.1 mouse_genomes_project 6 26499986 26500059 + Mir129-1 miRNA miRNA MGP_C3HHeJ_T0099515.1 MGP_C3HHeJ_G0037709.1 mouse_genomes_project 6 40808972 40809080 - Gm22363 snRNA snRNA MGP_C3HHeJ_T0008696.1 MGP_C3HHeJ_G0007017.1 mouse_genomes_project 6 150654968 150656243 - Gm15767 lincRNA lincRNA MGP_C3HHeJ_T0008697.1 MGP_C3HHeJ_G0007017.1 mouse_genomes_project 6 150655164 150656235 - Gm15767 lincRNA lincRNA MGP_C3HHeJ_T0015344.1 MGP_C3HHeJ_G0013448.1 mouse_genomes_project 6 117391630 117391794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015066.1 MGP_C3HHeJ_G0013170.1 mouse_genomes_project 6 9034883 9035181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015269.1 MGP_C3HHeJ_G0013373.1 mouse_genomes_project 6 89467891 89468655 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008597.1 MGP_C3HHeJ_G0006941.1 mouse_genomes_project 6 96296693 96298031 - Gm43904 lincRNA lincRNA MGP_C3HHeJ_T0078687.1 MGP_C3HHeJ_G0030749.1 mouse_genomes_project 6 97376697 97418164 + MGP_C3HHeJ_P0078687 Gmcl1 protein_coding protein_coding MGP_C3HHeJ_T0078688.1 MGP_C3HHeJ_G0030749.1 mouse_genomes_project 6 97376840 97389856 + MGP_C3HHeJ_P0078688 Gmcl1 protein_coding protein_coding MGP_C3HHeJ_T0078689.1 MGP_C3HHeJ_G0030749.1 mouse_genomes_project 6 97391460 97395630 + Gmcl1 protein_coding retained_intron MGP_C3HHeJ_T0078690.1 MGP_C3HHeJ_G0030749.1 mouse_genomes_project 6 97392958 97395714 + Gmcl1 protein_coding retained_intron MGP_C3HHeJ_T0076652.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402184 36456092 + MGP_C3HHeJ_P0076652 Luc7l2 protein_coding protein_coding MGP_C3HHeJ_T0076653.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402315 36460802 + MGP_C3HHeJ_P0076653 Luc7l2 protein_coding protein_coding MGP_C3HHeJ_T0076654.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402315 36457405 + MGP_C3HHeJ_P0076654 Luc7l2 protein_coding protein_coding MGP_C3HHeJ_T0076655.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402364 36460800 + MGP_C3HHeJ_P0076655 Luc7l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076656.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402381 36408762 + Luc7l2 protein_coding processed_transcript MGP_C3HHeJ_T0076657.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402381 36408893 + Luc7l2 protein_coding retained_intron MGP_C3HHeJ_T0076658.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402381 36404852 + Luc7l2 protein_coding processed_transcript MGP_C3HHeJ_T0076659.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402653 36460759 + MGP_C3HHeJ_P0076659 Luc7l2 protein_coding protein_coding MGP_C3HHeJ_T0076660.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36402697 36436349 + Luc7l2 protein_coding processed_transcript MGP_C3HHeJ_T0076661.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36406567 36440505 + MGP_C3HHeJ_P0076661 Luc7l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076662.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36408484 36460235 + MGP_C3HHeJ_P0076662 Luc7l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076663.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36410057 36420281 + Luc7l2 protein_coding retained_intron MGP_C3HHeJ_T0076664.1 MGP_C3HHeJ_G0030284.1 mouse_genomes_project 6 36420816 36457078 + Luc7l2 protein_coding retained_intron MGP_C3HHeJ_T0078372.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92638257 92699417 - MGP_C3HHeJ_P0078372 Fbln2 protein_coding protein_coding MGP_C3HHeJ_T0078373.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92638258 92699417 - MGP_C3HHeJ_P0078373 Fbln2 protein_coding protein_coding MGP_C3HHeJ_T0078374.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92638366 92645863 - Fbln2 protein_coding retained_intron MGP_C3HHeJ_T0078375.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92648343 92655350 - Fbln2 protein_coding retained_intron MGP_C3HHeJ_T0078376.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92653915 92655753 - Fbln2 protein_coding retained_intron MGP_C3HHeJ_T0078377.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92678577 92699041 - MGP_C3HHeJ_P0078377 Fbln2 protein_coding protein_coding MGP_C3HHeJ_T0078378.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92678597 92699048 - MGP_C3HHeJ_P0078378 Fbln2 protein_coding protein_coding MGP_C3HHeJ_T0078379.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92678776 92699050 - MGP_C3HHeJ_P0078379 Fbln2 protein_coding protein_coding MGP_C3HHeJ_T0078380.1 MGP_C3HHeJ_G0030684.1 mouse_genomes_project 6 92697645 92699045 - Fbln2 protein_coding processed_transcript MGP_C3HHeJ_T0099553.1 MGP_C3HHeJ_G0037747.1 mouse_genomes_project 6 132569438 132569503 + Gm22555 snRNA snRNA MGP_C3HHeJ_T0008708.1 MGP_C3HHeJ_G0007026.1 mouse_genomes_project 6 152682832 152701966 - 1700003I16Rik lincRNA lincRNA MGP_C3HHeJ_T0008520.1 MGP_C3HHeJ_G0006880.1 mouse_genomes_project 6 50816344 50821171 + Hottip lincRNA lincRNA MGP_C3HHeJ_T0008521.1 MGP_C3HHeJ_G0006880.1 mouse_genomes_project 6 50816353 50820647 + Hottip lincRNA lincRNA MGP_C3HHeJ_T0001925.1 MGP_C3HHeJ_G0001847.1 mouse_genomes_project 6 43312248 43314461 + TEC TEC MGP_C3HHeJ_T0015095.1 MGP_C3HHeJ_G0013199.1 mouse_genomes_project 6 20062449 20063153 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000135.1 MGP_C3HHeJ_G0000104.1 mouse_genomes_project 6 114432637 114433211 + MGP_C3HHeJ_P0000135 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000137.1 MGP_C3HHeJ_G0000104.1 mouse_genomes_project 6 114432644 114433211 + MGP_C3HHeJ_P0000137 IG_V_gene IG_V_gene MGP_C3HHeJ_T0100803.1 MGP_C3HHeJ_G0038997.1 mouse_genomes_project 6 138092687 138092821 + Gm22881 snoRNA snoRNA MGP_C3HHeJ_T0100755.1 MGP_C3HHeJ_G0038949.1 mouse_genomes_project 6 51216291 51216413 - Gm24355 snoRNA snoRNA MGP_C3HHeJ_T0076892.1 MGP_C3HHeJ_G0030361.1 mouse_genomes_project 6 40942309 40943242 + MGP_C3HHeJ_P0076892 Olfr448 protein_coding protein_coding MGP_C3HHeJ_T0002038.1 MGP_C3HHeJ_G0001959.1 mouse_genomes_project 6 96767209 96767991 + TEC TEC MGP_C3HHeJ_T0008481.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 33953478 34138387 - lincRNA lincRNA MGP_C3HHeJ_T0008482.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 33955845 34020654 - lincRNA lincRNA MGP_C3HHeJ_T0008483.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34013745 34138628 - lincRNA lincRNA MGP_C3HHeJ_T0008484.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34086351 34138770 - lincRNA lincRNA MGP_C3HHeJ_T0008485.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34137914 34138824 - lincRNA lincRNA MGP_C3HHeJ_T0008486.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34137916 34140727 - lincRNA lincRNA MGP_C3HHeJ_T0008487.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34137923 34139453 - lincRNA lincRNA MGP_C3HHeJ_T0008488.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34138201 34139963 - lincRNA lincRNA MGP_C3HHeJ_T0008489.1 MGP_C3HHeJ_G0006856.1 mouse_genomes_project 6 34138275 34139594 - lincRNA lincRNA MGP_C3HHeJ_T0075927.1 MGP_C3HHeJ_G0030150.1 mouse_genomes_project 6 8804872 8811874 - MGP_C3HHeJ_P0075927 Ndufa4 protein_coding protein_coding MGP_C3HHeJ_T0075928.1 MGP_C3HHeJ_G0030150.1 mouse_genomes_project 6 8804881 8811938 - Ndufa4 protein_coding retained_intron MGP_C3HHeJ_T0015272.1 MGP_C3HHeJ_G0013376.1 mouse_genomes_project 6 91293665 91294662 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015362.1 MGP_C3HHeJ_G0013466.1 mouse_genomes_project 6 118883194 118886657 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076591.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34616095 35085696 - MGP_C3HHeJ_P0076591 Dgki protein_coding protein_coding MGP_C3HHeJ_T0076592.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34617054 35085906 - MGP_C3HHeJ_P0076592 Dgki protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076593.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34617054 35085906 - MGP_C3HHeJ_P0076593 Dgki protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076594.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34617054 35085906 - MGP_C3HHeJ_P0076594 Dgki protein_coding protein_coding MGP_C3HHeJ_T0076595.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34617229 35085359 - MGP_C3HHeJ_P0076595 Dgki protein_coding protein_coding MGP_C3HHeJ_T0076596.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34680821 34806382 - Dgki protein_coding processed_transcript MGP_C3HHeJ_T0076597.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 34809961 34839845 - Dgki protein_coding processed_transcript MGP_C3HHeJ_T0076598.1 MGP_C3HHeJ_G0030271.1 mouse_genomes_project 6 35012967 35085466 - Dgki protein_coding processed_transcript MGP_C3HHeJ_T0004989.1 MGP_C3HHeJ_G0004251.1 mouse_genomes_project 6 111801614 111803080 - Gm15401 antisense antisense MGP_C3HHeJ_T0004990.1 MGP_C3HHeJ_G0004251.1 mouse_genomes_project 6 111801965 111810694 - Gm15401 antisense antisense MGP_C3HHeJ_T0004991.1 MGP_C3HHeJ_G0004251.1 mouse_genomes_project 6 111802848 111811243 - Gm15401 antisense antisense MGP_C3HHeJ_T0077256.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52648269 52676478 + Chn2 protein_coding processed_transcript MGP_C3HHeJ_T0077257.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52648288 52914818 + MGP_C3HHeJ_P0077257 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077258.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52648328 52834443 + MGP_C3HHeJ_P0077258 Chn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077259.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52648754 52836407 + Chn2 protein_coding processed_transcript MGP_C3HHeJ_T0077260.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52648801 52809714 + MGP_C3HHeJ_P0077260 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077261.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52706373 52834410 + Chn2 protein_coding processed_transcript MGP_C3HHeJ_T0077262.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52879437 52914390 + MGP_C3HHeJ_P0077262 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077263.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52881694 52914182 + MGP_C3HHeJ_P0077263 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077264.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52883713 52914488 + MGP_C3HHeJ_P0077264 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077265.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52887038 52915907 + MGP_C3HHeJ_P0077265 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077266.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52887456 52914341 + MGP_C3HHeJ_P0077266 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077267.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52887456 52914341 + MGP_C3HHeJ_P0077267 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077268.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52887456 52914341 + MGP_C3HHeJ_P0077268 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077269.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52887456 52914341 + MGP_C3HHeJ_P0077269 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0077270.1 MGP_C3HHeJ_G0030452.1 mouse_genomes_project 6 52887456 52914341 + MGP_C3HHeJ_P0077270 Chn2 protein_coding protein_coding MGP_C3HHeJ_T0005006.1 MGP_C3HHeJ_G0004265.1 mouse_genomes_project 6 126379105 126400105 + antisense antisense MGP_C3HHeJ_T0015049.1 MGP_C3HHeJ_G0013153.1 mouse_genomes_project 6 3182321 3182554 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100775.1 MGP_C3HHeJ_G0038969.1 mouse_genomes_project 6 90325831 90325961 - Gm22312 snoRNA snoRNA MGP_C3HHeJ_T0075879.1 MGP_C3HHeJ_G0030139.1 mouse_genomes_project 6 4362945 4371979 + MGP_C3HHeJ_P0075879 Tac1 protein_coding protein_coding MGP_C3HHeJ_T0075880.1 MGP_C3HHeJ_G0030139.1 mouse_genomes_project 6 4363010 4371984 + MGP_C3HHeJ_P0075880 Tac1 protein_coding protein_coding MGP_C3HHeJ_T0075881.1 MGP_C3HHeJ_G0030139.1 mouse_genomes_project 6 4363141 4371978 + MGP_C3HHeJ_P0075881 Tac1 protein_coding protein_coding MGP_C3HHeJ_T0075882.1 MGP_C3HHeJ_G0030139.1 mouse_genomes_project 6 4371369 4374839 + Tac1 protein_coding processed_transcript MGP_C3HHeJ_T0002533.1 MGP_C3HHeJ_G0002443.1 mouse_genomes_project 6 39574218 39574267 + MGP_C3HHeJ_P0002533 Trbj2-4 TR_J_gene TR_J_gene MGP_C3HHeJ_T0015064.1 MGP_C3HHeJ_G0013168.1 mouse_genomes_project 6 7664320 7665221 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011563.1 MGP_C3HHeJ_G0009696.1 mouse_genomes_project 6 71668940 71669236 - Gm24005 misc_RNA misc_RNA MGP_C3HHeJ_T0076684.1 MGP_C3HHeJ_G0030290.1 mouse_genomes_project 6 37009678 37082394 - MGP_C3HHeJ_P0076684 Kdm7a protein_coding protein_coding MGP_C3HHeJ_T0076685.1 MGP_C3HHeJ_G0030290.1 mouse_genomes_project 6 37015162 37027725 - Kdm7a protein_coding processed_transcript MGP_C3HHeJ_T0004952.1 MGP_C3HHeJ_G0004232.1 mouse_genomes_project 6 96810701 96812707 - Gm44418 antisense antisense MGP_C3HHeJ_T0005046.1 MGP_C3HHeJ_G0004299.1 mouse_genomes_project 6 147801601 147826909 + Sox5os2 antisense antisense MGP_C3HHeJ_T0001898.1 MGP_C3HHeJ_G0001820.1 mouse_genomes_project 6 24855680 24858539 - TEC TEC MGP_C3HHeJ_T0078560.1 MGP_C3HHeJ_G0030724.1 mouse_genomes_project 6 95832738 95847048 - MGP_C3HHeJ_P0078560 Gata2 protein_coding protein_coding MGP_C3HHeJ_T0078561.1 MGP_C3HHeJ_G0030724.1 mouse_genomes_project 6 95832740 95841436 - MGP_C3HHeJ_P0078561 Gata2 protein_coding protein_coding MGP_C3HHeJ_T0078562.1 MGP_C3HHeJ_G0030724.1 mouse_genomes_project 6 95833999 95835326 - Gata2 protein_coding retained_intron MGP_C3HHeJ_T0078563.1 MGP_C3HHeJ_G0030724.1 mouse_genomes_project 6 95837129 95838852 - Gata2 protein_coding retained_intron MGP_C3HHeJ_T0078564.1 MGP_C3HHeJ_G0030724.1 mouse_genomes_project 6 95840107 95841436 - MGP_C3HHeJ_P0078564 Gata2 protein_coding protein_coding MGP_C3HHeJ_T0000286.1 MGP_C3HHeJ_G0000236.1 mouse_genomes_project 6 116321443 116321902 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076811.1 MGP_C3HHeJ_G0030333.1 mouse_genomes_project 6 39897316 39908820 + MGP_C3HHeJ_P0076811 Sval2 protein_coding protein_coding MGP_C3HHeJ_T0076812.1 MGP_C3HHeJ_G0030333.1 mouse_genomes_project 6 39904645 39908779 + MGP_C3HHeJ_P0076812 Sval2 protein_coding protein_coding MGP_C3HHeJ_T0076813.1 MGP_C3HHeJ_G0030333.1 mouse_genomes_project 6 39906198 39908779 + MGP_C3HHeJ_P0076813 Sval2 protein_coding protein_coding MGP_C3HHeJ_T0076814.1 MGP_C3HHeJ_G0030333.1 mouse_genomes_project 6 39907746 39908696 + Sval2 protein_coding retained_intron MGP_C3HHeJ_T0079259.1 MGP_C3HHeJ_G0030864.1 mouse_genomes_project 6 112315344 112372691 - MGP_C3HHeJ_P0079259 St3gal5 protein_coding protein_coding MGP_C3HHeJ_T0079260.1 MGP_C3HHeJ_G0030864.1 mouse_genomes_project 6 112315344 112372722 - MGP_C3HHeJ_P0079260 St3gal5 protein_coding protein_coding MGP_C3HHeJ_T0079261.1 MGP_C3HHeJ_G0030864.1 mouse_genomes_project 6 112323478 112372557 - MGP_C3HHeJ_P0079261 St3gal5 protein_coding protein_coding MGP_C3HHeJ_T0079262.1 MGP_C3HHeJ_G0030864.1 mouse_genomes_project 6 112328471 112355134 - MGP_C3HHeJ_P0079262 St3gal5 protein_coding protein_coding MGP_C3HHeJ_T0015274.1 MGP_C3HHeJ_G0013378.1 mouse_genomes_project 6 91594599 91594755 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077699.1 MGP_C3HHeJ_G0030556.1 mouse_genomes_project 6 66511596 66512690 + MGP_C3HHeJ_P0077699 Olfr215 protein_coding protein_coding MGP_C3HHeJ_T0077809.1 MGP_C3HHeJ_G0030577.1 mouse_genomes_project 6 67529819 67550253 - MGP_C3HHeJ_P0077809 Mkrn2 protein_coding protein_coding MGP_C3HHeJ_T0077812.1 MGP_C3HHeJ_G0030577.1 mouse_genomes_project 6 67538998 67550219 - Mkrn2 protein_coding processed_transcript MGP_C3HHeJ_T0077813.1 MGP_C3HHeJ_G0030577.1 mouse_genomes_project 6 67539999 67541061 - Mkrn2 protein_coding retained_intron MGP_C3HHeJ_T0011534.1 MGP_C3HHeJ_G0009667.1 mouse_genomes_project 6 14940366 14940503 + Gm27444 misc_RNA misc_RNA MGP_C3HHeJ_T0076267.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26896728 26899869 + Ccdc136 protein_coding processed_transcript MGP_C3HHeJ_T0076268.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26897049 26927301 + MGP_C3HHeJ_P0076268 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076269.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26897062 26927296 + MGP_C3HHeJ_P0076269 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076270.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26897071 26922440 + MGP_C3HHeJ_P0076270 Ccdc136 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076271.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26897104 26927342 + MGP_C3HHeJ_P0076271 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076272.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26899345 26927296 + MGP_C3HHeJ_P0076272 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076273.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26899345 26927303 + MGP_C3HHeJ_P0076273 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076274.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26903240 26927205 + MGP_C3HHeJ_P0076274 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076275.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26910452 26927336 + MGP_C3HHeJ_P0076275 Ccdc136 protein_coding protein_coding MGP_C3HHeJ_T0076276.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26912831 26927300 + Ccdc136 protein_coding processed_transcript MGP_C3HHeJ_T0076277.1 MGP_C3HHeJ_G0030218.1 mouse_genomes_project 6 26915299 26927302 + Ccdc136 protein_coding processed_transcript MGP_C3HHeJ_T0015333.1 MGP_C3HHeJ_G0013437.1 mouse_genomes_project 6 116134391 116134872 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075891.1 MGP_C3HHeJ_G0030142.1 mouse_genomes_project 6 4806123 5004631 - MGP_C3HHeJ_P0075891 Col28a1 protein_coding protein_coding MGP_C3HHeJ_T0075892.1 MGP_C3HHeJ_G0030142.1 mouse_genomes_project 6 4829004 4830481 - Col28a1 protein_coding processed_transcript MGP_C3HHeJ_T0075893.1 MGP_C3HHeJ_G0030142.1 mouse_genomes_project 6 4887476 4892304 - Col28a1 protein_coding retained_intron MGP_C3HHeJ_T0015227.1 MGP_C3HHeJ_G0013331.1 mouse_genomes_project 6 73309285 73309829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010659.1 MGP_C3HHeJ_G0008792.1 mouse_genomes_project 6 12390896 12391007 + Gm25470 miRNA miRNA MGP_C3HHeJ_T0008705.1 MGP_C3HHeJ_G0007023.1 mouse_genomes_project 6 152135146 152145729 + Gm44115 lincRNA lincRNA MGP_C3HHeJ_T0005036.1 MGP_C3HHeJ_G0004291.1 mouse_genomes_project 6 139154441 139157541 + Gm26653 antisense antisense MGP_C3HHeJ_T0008408.1 MGP_C3HHeJ_G0006808.1 mouse_genomes_project 6 3079741 3126605 + Gm20619 lincRNA lincRNA MGP_C3HHeJ_T0008409.1 MGP_C3HHeJ_G0006808.1 mouse_genomes_project 6 3079769 3218799 + Gm20619 lincRNA lincRNA MGP_C3HHeJ_T0008410.1 MGP_C3HHeJ_G0006808.1 mouse_genomes_project 6 3079772 3235199 + Gm20619 lincRNA lincRNA MGP_C3HHeJ_T0008411.1 MGP_C3HHeJ_G0006808.1 mouse_genomes_project 6 3079800 3126601 + Gm20619 lincRNA lincRNA MGP_C3HHeJ_T0008412.1 MGP_C3HHeJ_G0006808.1 mouse_genomes_project 6 3147885 3218594 + Gm20619 lincRNA lincRNA MGP_C3HHeJ_T0079961.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130040517 130117002 - MGP_C3HHeJ_P0079961 Tspan9 protein_coding protein_coding MGP_C3HHeJ_T0079962.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130044378 130045951 - Tspan9 protein_coding retained_intron MGP_C3HHeJ_T0079963.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130044895 130117506 - MGP_C3HHeJ_P0079963 Tspan9 protein_coding protein_coding MGP_C3HHeJ_T0079964.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130045564 130232146 - MGP_C3HHeJ_P0079964 Tspan9 protein_coding protein_coding MGP_C3HHeJ_T0079965.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130045570 130229328 - MGP_C3HHeJ_P0079965 Tspan9 protein_coding protein_coding MGP_C3HHeJ_T0079966.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130046214 130232139 - MGP_C3HHeJ_P0079966 Tspan9 protein_coding protein_coding MGP_C3HHeJ_T0079967.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130046299 130210811 - MGP_C3HHeJ_P0079967 Tspan9 protein_coding protein_coding MGP_C3HHeJ_T0079968.1 MGP_C3HHeJ_G0031020.1 mouse_genomes_project 6 130167183 130232180 - Tspan9 protein_coding processed_transcript MGP_C3HHeJ_T0001995.1 MGP_C3HHeJ_G0001916.1 mouse_genomes_project 6 82807709 82809787 - TEC TEC MGP_C3HHeJ_T0077901.1 MGP_C3HHeJ_G0030593.1 mouse_genomes_project 6 69498846 69515442 - MGP_C3HHeJ_P0077901 Tatdn2 protein_coding protein_coding MGP_C3HHeJ_T0077902.1 MGP_C3HHeJ_G0030593.1 mouse_genomes_project 6 69498849 69507679 - MGP_C3HHeJ_P0077902 Tatdn2 protein_coding protein_coding MGP_C3HHeJ_T0077903.1 MGP_C3HHeJ_G0030593.1 mouse_genomes_project 6 69498966 69514933 - MGP_C3HHeJ_P0077903 Tatdn2 protein_coding protein_coding MGP_C3HHeJ_T0077904.1 MGP_C3HHeJ_G0030593.1 mouse_genomes_project 6 69499466 69502640 - MGP_C3HHeJ_P0077904 Tatdn2 protein_coding protein_coding MGP_C3HHeJ_T0077905.1 MGP_C3HHeJ_G0030593.1 mouse_genomes_project 6 69499710 69514824 - MGP_C3HHeJ_P0077905 Tatdn2 protein_coding protein_coding MGP_C3HHeJ_T0002049.1 MGP_C3HHeJ_G0001970.1 mouse_genomes_project 6 97867953 97870313 + TEC TEC MGP_C3HHeJ_T0008405.1 MGP_C3HHeJ_G0006807.1 mouse_genomes_project 6 1564445 1564825 - Gm20714 lincRNA lincRNA MGP_C3HHeJ_T0008406.1 MGP_C3HHeJ_G0006807.1 mouse_genomes_project 6 1564445 1573194 - Gm20714 lincRNA lincRNA MGP_C3HHeJ_T0008407.1 MGP_C3HHeJ_G0006807.1 mouse_genomes_project 6 1564447 1570292 - Gm20714 lincRNA lincRNA MGP_C3HHeJ_T0018001.1 MGP_C3HHeJ_G0015384.1 mouse_genomes_project 6 5322580 5344216 - A430035B10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018002.1 MGP_C3HHeJ_G0015384.1 mouse_genomes_project 6 5323718 5331765 - A430035B10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018003.1 MGP_C3HHeJ_G0015384.1 mouse_genomes_project 6 5324825 5342864 - A430035B10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018004.1 MGP_C3HHeJ_G0015384.1 mouse_genomes_project 6 5326207 5342807 - A430035B10Rik processed_transcript retained_intron MGP_C3HHeJ_T0018005.1 MGP_C3HHeJ_G0015384.1 mouse_genomes_project 6 5340844 5342924 - A430035B10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011580.1 MGP_C3HHeJ_G0009713.1 mouse_genomes_project 6 145489731 145490020 - Gm25430 misc_RNA misc_RNA MGP_C3HHeJ_T0079869.1 MGP_C3HHeJ_G0030998.1 mouse_genomes_project 6 127287811 127288492 + Tnfrsf1a protein_coding processed_transcript MGP_C3HHeJ_T0079870.1 MGP_C3HHeJ_G0030998.1 mouse_genomes_project 6 127287907 127296986 + MGP_C3HHeJ_P0079870 Tnfrsf1a protein_coding protein_coding MGP_C3HHeJ_T0079871.1 MGP_C3HHeJ_G0030998.1 mouse_genomes_project 6 127288179 127302166 + MGP_C3HHeJ_P0079871 Tnfrsf1a protein_coding protein_coding MGP_C3HHeJ_T0079872.1 MGP_C3HHeJ_G0030998.1 mouse_genomes_project 6 127297040 127300786 + MGP_C3HHeJ_P0079872 Tnfrsf1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079873.1 MGP_C3HHeJ_G0030998.1 mouse_genomes_project 6 127297440 127301459 + MGP_C3HHeJ_P0079873 Tnfrsf1a protein_coding protein_coding MGP_C3HHeJ_T0079874.1 MGP_C3HHeJ_G0030998.1 mouse_genomes_project 6 127300107 127301555 + Tnfrsf1a protein_coding retained_intron MGP_C3HHeJ_T0101455.1 MGP_C3HHeJ_G0039466.1 mouse_genomes_project 6 131353531 131363457 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101456.1 MGP_C3HHeJ_G0039466.1 mouse_genomes_project 6 131353531 131369899 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0008613.1 MGP_C3HHeJ_G0006954.1 mouse_genomes_project 6 101440344 101448789 - Gm43878 lincRNA lincRNA MGP_C3HHeJ_T0008614.1 MGP_C3HHeJ_G0006954.1 mouse_genomes_project 6 101443177 101448824 - Gm43878 lincRNA lincRNA MGP_C3HHeJ_T0008615.1 MGP_C3HHeJ_G0006954.1 mouse_genomes_project 6 101443189 101457709 - Gm43878 lincRNA lincRNA MGP_C3HHeJ_T0008671.1 MGP_C3HHeJ_G0006999.1 mouse_genomes_project 6 138622953 138645514 + 4930425L21Rik lincRNA lincRNA MGP_C3HHeJ_T0008672.1 MGP_C3HHeJ_G0006999.1 mouse_genomes_project 6 138641155 138646646 + 4930425L21Rik lincRNA lincRNA MGP_C3HHeJ_T0015173.1 MGP_C3HHeJ_G0013277.1 mouse_genomes_project 6 51638870 51639410 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015228.1 MGP_C3HHeJ_G0013332.1 mouse_genomes_project 6 73818153 73818406 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018082.1 MGP_C3HHeJ_G0015407.1 mouse_genomes_project 6 124190207 124201979 - Gm16556 processed_transcript processed_transcript MGP_C3HHeJ_T0018083.1 MGP_C3HHeJ_G0015407.1 mouse_genomes_project 6 124190233 124201955 - Gm16556 processed_transcript processed_transcript MGP_C3HHeJ_T0099530.1 MGP_C3HHeJ_G0037724.1 mouse_genomes_project 6 86141969 86142132 + Gm23510 snRNA snRNA MGP_C3HHeJ_T0098158.1 MGP_C3HHeJ_G0036370.1 mouse_genomes_project 6 20948557 20948690 - Gm24217 rRNA rRNA MGP_C3HHeJ_T0101463.1 MGP_C3HHeJ_G0039471.1 mouse_genomes_project 6 134052478 134112962 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101464.1 MGP_C3HHeJ_G0039471.1 mouse_genomes_project 6 134102187 134111942 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0078381.1 MGP_C3HHeJ_G0030685.1 mouse_genomes_project 6 92738908 92756843 - MGP_C3HHeJ_P0078381 Hdac11 protein_coding protein_coding MGP_C3HHeJ_T0078382.1 MGP_C3HHeJ_G0030685.1 mouse_genomes_project 6 92740309 92741829 - Hdac11 protein_coding retained_intron MGP_C3HHeJ_T0078383.1 MGP_C3HHeJ_G0030685.1 mouse_genomes_project 6 92744133 92747942 - MGP_C3HHeJ_P0078383 Hdac11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078384.1 MGP_C3HHeJ_G0030685.1 mouse_genomes_project 6 92745744 92756429 - Hdac11 protein_coding retained_intron MGP_C3HHeJ_T0078385.1 MGP_C3HHeJ_G0030685.1 mouse_genomes_project 6 92747070 92756767 - MGP_C3HHeJ_P0078385 Hdac11 protein_coding protein_coding MGP_C3HHeJ_T0078386.1 MGP_C3HHeJ_G0030685.1 mouse_genomes_project 6 92753875 92756775 - Hdac11 protein_coding retained_intron MGP_C3HHeJ_T0079147.1 MGP_C3HHeJ_G0030842.1 mouse_genomes_project 6 107055779 107070750 - MGP_C3HHeJ_P0079147 Lrrtm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079148.1 MGP_C3HHeJ_G0030842.1 mouse_genomes_project 6 107067920 107070742 - MGP_C3HHeJ_P0079148 Lrrtm1 protein_coding protein_coding MGP_C3HHeJ_T0079149.1 MGP_C3HHeJ_G0030842.1 mouse_genomes_project 6 107067926 107070721 - MGP_C3HHeJ_P0079149 Lrrtm1 protein_coding protein_coding MGP_C3HHeJ_T0079150.1 MGP_C3HHeJ_G0030842.1 mouse_genomes_project 6 107069325 107070517 - MGP_C3HHeJ_P0079150 Lrrtm1 protein_coding protein_coding MGP_C3HHeJ_T0008566.1 MGP_C3HHeJ_G0006919.1 mouse_genomes_project 6 82505690 82560784 - Gm43950 lincRNA lincRNA MGP_C3HHeJ_T0008592.1 MGP_C3HHeJ_G0006939.1 mouse_genomes_project 6 94856484 94864307 - Gm1965 lincRNA lincRNA MGP_C3HHeJ_T0008593.1 MGP_C3HHeJ_G0006939.1 mouse_genomes_project 6 94856502 94864318 - Gm1965 lincRNA lincRNA MGP_C3HHeJ_T0008594.1 MGP_C3HHeJ_G0006939.1 mouse_genomes_project 6 94856519 94864307 - Gm1965 lincRNA lincRNA MGP_C3HHeJ_T0008595.1 MGP_C3HHeJ_G0006939.1 mouse_genomes_project 6 94857198 94864307 - Gm1965 lincRNA lincRNA MGP_C3HHeJ_T0080141.1 MGP_C3HHeJ_G0031074.1 mouse_genomes_project 6 133850899 133866124 - MGP_C3HHeJ_P0080141 Styk1 protein_coding protein_coding MGP_C3HHeJ_T0080142.1 MGP_C3HHeJ_G0031074.1 mouse_genomes_project 6 133851887 133868663 - MGP_C3HHeJ_P0080142 Styk1 protein_coding protein_coding MGP_C3HHeJ_T0080143.1 MGP_C3HHeJ_G0031074.1 mouse_genomes_project 6 133863473 133906893 - Styk1 protein_coding processed_transcript MGP_C3HHeJ_T0080144.1 MGP_C3HHeJ_G0031074.1 mouse_genomes_project 6 133891266 133906890 - Styk1 protein_coding processed_transcript MGP_C3HHeJ_T0080145.1 MGP_C3HHeJ_G0031074.1 mouse_genomes_project 6 133905258 133906893 - Styk1 protein_coding retained_intron MGP_C3HHeJ_T0004898.1 MGP_C3HHeJ_G0004195.1 mouse_genomes_project 6 63440488 63447590 - Gm44317 antisense antisense MGP_C3HHeJ_T0002534.1 MGP_C3HHeJ_G0002444.1 mouse_genomes_project 6 39574309 39574358 + MGP_C3HHeJ_P0002534 Trbj2-5 TR_J_gene TR_J_gene MGP_C3HHeJ_T0001962.1 MGP_C3HHeJ_G0001884.1 mouse_genomes_project 6 59835055 59839083 - TEC TEC MGP_C3HHeJ_T0000297.1 MGP_C3HHeJ_G0000247.1 mouse_genomes_project 6 116842491 116842895 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076091.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171247 19200029 + MGP_C3HHeJ_P0076091 Ing3 protein_coding protein_coding MGP_C3HHeJ_T0076092.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171325 19198521 + Ing3 protein_coding retained_intron MGP_C3HHeJ_T0076093.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171330 19198122 + MGP_C3HHeJ_P0076093 Ing3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076094.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171333 19198894 + MGP_C3HHeJ_P0076094 Ing3 protein_coding protein_coding MGP_C3HHeJ_T0076095.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171346 19194055 + MGP_C3HHeJ_P0076095 Ing3 protein_coding protein_coding MGP_C3HHeJ_T0076096.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171361 19197717 + MGP_C3HHeJ_P0076096 Ing3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076097.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19171696 19189848 + MGP_C3HHeJ_P0076097 Ing3 protein_coding protein_coding MGP_C3HHeJ_T0076098.1 MGP_C3HHeJ_G0030177.1 mouse_genomes_project 6 19173733 19175933 + Ing3 protein_coding retained_intron MGP_C3HHeJ_T0004979.1 MGP_C3HHeJ_G0004244.1 mouse_genomes_project 6 101136252 101138130 - Gm44287 antisense antisense MGP_C3HHeJ_T0001943.1 MGP_C3HHeJ_G0001865.1 mouse_genomes_project 6 44737677 44740152 + TEC TEC MGP_C3HHeJ_T0077359.1 MGP_C3HHeJ_G0030474.1 mouse_genomes_project 6 55418879 55420293 + Avl9 protein_coding retained_intron MGP_C3HHeJ_T0077360.1 MGP_C3HHeJ_G0030474.1 mouse_genomes_project 6 55418907 55469470 + MGP_C3HHeJ_P0077360 Avl9 protein_coding protein_coding MGP_C3HHeJ_T0077361.1 MGP_C3HHeJ_G0030474.1 mouse_genomes_project 6 55418918 55448068 + MGP_C3HHeJ_P0077361 Avl9 protein_coding protein_coding MGP_C3HHeJ_T0077362.1 MGP_C3HHeJ_G0030474.1 mouse_genomes_project 6 55418922 55439162 + MGP_C3HHeJ_P0077362 Avl9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077363.1 MGP_C3HHeJ_G0030474.1 mouse_genomes_project 6 55451823 55461610 + Avl9 protein_coding retained_intron MGP_C3HHeJ_T0077914.1 MGP_C3HHeJ_G0030595.1 mouse_genomes_project 6 69588700 69596372 - MGP_C3HHeJ_P0077914 Vhl protein_coding protein_coding MGP_C3HHeJ_T0077915.1 MGP_C3HHeJ_G0030595.1 mouse_genomes_project 6 69588706 69590827 - MGP_C3HHeJ_P0077915 Vhl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077916.1 MGP_C3HHeJ_G0030595.1 mouse_genomes_project 6 69590572 69595610 - Vhl protein_coding processed_transcript MGP_C3HHeJ_T0077917.1 MGP_C3HHeJ_G0030595.1 mouse_genomes_project 6 69590776 69595402 - Vhl protein_coding processed_transcript MGP_C3HHeJ_T0008638.1 MGP_C3HHeJ_G0006975.1 mouse_genomes_project 6 122662796 122680172 - Gm44148 lincRNA lincRNA MGP_C3HHeJ_T0005562.1 MGP_C3HHeJ_G0004674.1 mouse_genomes_project 6 139522735 139526745 - Gm44140 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0078630.1 MGP_C3HHeJ_G0030737.1 mouse_genomes_project 6 96487217 96499353 + MGP_C3HHeJ_P0078630 Prokr1 protein_coding protein_coding MGP_C3HHeJ_T0078631.1 MGP_C3HHeJ_G0030737.1 mouse_genomes_project 6 96487240 96499352 + MGP_C3HHeJ_P0078631 Prokr1 protein_coding protein_coding MGP_C3HHeJ_T0078632.1 MGP_C3HHeJ_G0030737.1 mouse_genomes_project 6 96487241 96489550 + MGP_C3HHeJ_P0078632 Prokr1 protein_coding protein_coding MGP_C3HHeJ_T0015090.1 MGP_C3HHeJ_G0013194.1 mouse_genomes_project 6 18678859 18679079 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100770.1 MGP_C3HHeJ_G0038964.1 mouse_genomes_project 6 83113027 83113161 + Gm23234 snoRNA snoRNA MGP_C3HHeJ_T0011526.1 MGP_C3HHeJ_G0009659.1 mouse_genomes_project 6 5272998 5273310 + Gm24059 misc_RNA misc_RNA MGP_C3HHeJ_T0099537.1 MGP_C3HHeJ_G0037731.1 mouse_genomes_project 6 105389279 105389443 - Gm23727 snRNA snRNA MGP_C3HHeJ_T0015215.1 MGP_C3HHeJ_G0013319.1 mouse_genomes_project 6 69135164 69135216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078359.1 MGP_C3HHeJ_G0030680.1 mouse_genomes_project 6 92387421 92415262 + MGP_C3HHeJ_P0078359 Xpc protein_coding protein_coding MGP_C3HHeJ_T0078360.1 MGP_C3HHeJ_G0030680.1 mouse_genomes_project 6 92387425 92396394 + MGP_C3HHeJ_P0078360 Xpc protein_coding protein_coding MGP_C3HHeJ_T0078361.1 MGP_C3HHeJ_G0030680.1 mouse_genomes_project 6 92387514 92412294 + MGP_C3HHeJ_P0078361 Xpc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100777.1 MGP_C3HHeJ_G0038971.1 mouse_genomes_project 6 93071607 93071703 - Gm25185 snoRNA snoRNA MGP_C3HHeJ_T0080313.1 MGP_C3HHeJ_G0031134.1 mouse_genomes_project 6 139927202 139930621 - MGP_C3HHeJ_P0080313 Mgp protein_coding protein_coding MGP_C3HHeJ_T0080314.1 MGP_C3HHeJ_G0031134.1 mouse_genomes_project 6 139928487 139930579 - Mgp protein_coding retained_intron MGP_C3HHeJ_T0001871.1 MGP_C3HHeJ_G0001793.1 mouse_genomes_project 6 1227171 1227896 - TEC TEC MGP_C3HHeJ_T0100768.1 MGP_C3HHeJ_G0038962.1 mouse_genomes_project 6 67421284 67421422 + Gm24008 snoRNA snoRNA MGP_C3HHeJ_T0015255.1 MGP_C3HHeJ_G0013359.1 mouse_genomes_project 6 83868667 83869133 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001982.1 MGP_C3HHeJ_G0001903.1 mouse_genomes_project 6 74933604 74935831 + TEC TEC MGP_C3HHeJ_T0079325.1 MGP_C3HHeJ_G0030873.1 mouse_genomes_project 6 113103671 113161146 + MGP_C3HHeJ_P0079325 Rmnd5a protein_coding protein_coding MGP_C3HHeJ_T0079326.1 MGP_C3HHeJ_G0030873.1 mouse_genomes_project 6 113152561 113155317 + Rmnd5a protein_coding retained_intron MGP_C3HHeJ_T0079327.1 MGP_C3HHeJ_G0030873.1 mouse_genomes_project 6 113153479 113159314 + Rmnd5a protein_coding processed_transcript MGP_C3HHeJ_T0079328.1 MGP_C3HHeJ_G0030873.1 mouse_genomes_project 6 113153574 113158447 + Rmnd5a protein_coding processed_transcript MGP_C3HHeJ_T0015349.1 MGP_C3HHeJ_G0013453.1 mouse_genomes_project 6 117626018 117626439 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077759.1 MGP_C3HHeJ_G0030568.1 mouse_genomes_project 6 67198685 67207330 - MGP_C3HHeJ_P0077759 H1foo protein_coding protein_coding MGP_C3HHeJ_T0077760.1 MGP_C3HHeJ_G0030568.1 mouse_genomes_project 6 67198690 67207330 - MGP_C3HHeJ_P0077760 H1foo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077761.1 MGP_C3HHeJ_G0030568.1 mouse_genomes_project 6 67198690 67207330 - MGP_C3HHeJ_P0077761 H1foo protein_coding protein_coding MGP_C3HHeJ_T0077762.1 MGP_C3HHeJ_G0030568.1 mouse_genomes_project 6 67198696 67201996 - MGP_C3HHeJ_P0077762 H1foo protein_coding protein_coding MGP_C3HHeJ_T0077763.1 MGP_C3HHeJ_G0030568.1 mouse_genomes_project 6 67199000 67207315 - MGP_C3HHeJ_P0077763 H1foo protein_coding protein_coding MGP_C3HHeJ_T0015479.1 MGP_C3HHeJ_G0013583.1 mouse_genomes_project 6 152545928 152546863 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100779.1 MGP_C3HHeJ_G0038973.1 mouse_genomes_project 6 100405020 100405150 + Gm23014 snoRNA snoRNA MGP_C3HHeJ_T0008670.1 MGP_C3HHeJ_G0006998.1 mouse_genomes_project 6 138259364 138269522 - Gm44275 lincRNA lincRNA MGP_C3HHeJ_T0076364.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27921370 27947967 - MGP_C3HHeJ_P0076364 Zc3hc1 protein_coding protein_coding MGP_C3HHeJ_T0076365.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27921374 27947946 - MGP_C3HHeJ_P0076365 Zc3hc1 protein_coding protein_coding MGP_C3HHeJ_T0076366.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27921378 27922209 - Zc3hc1 protein_coding retained_intron MGP_C3HHeJ_T0076367.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27921378 27947972 - MGP_C3HHeJ_P0076367 Zc3hc1 protein_coding protein_coding MGP_C3HHeJ_T0076368.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27921464 27947954 - MGP_C3HHeJ_P0076368 Zc3hc1 protein_coding protein_coding MGP_C3HHeJ_T0076369.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27925258 27927971 - Zc3hc1 protein_coding retained_intron MGP_C3HHeJ_T0076370.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27927912 27947950 - MGP_C3HHeJ_P0076370 Zc3hc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076371.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27929813 27937613 - Zc3hc1 protein_coding processed_transcript MGP_C3HHeJ_T0076372.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27930993 27947933 - MGP_C3HHeJ_P0076372 Zc3hc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076373.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27941756 27947954 - Zc3hc1 protein_coding retained_intron MGP_C3HHeJ_T0076374.1 MGP_C3HHeJ_G0030231.1 mouse_genomes_project 6 27944307 27947958 - Zc3hc1 protein_coding retained_intron MGP_C3HHeJ_T0002666.1 MGP_C3HHeJ_G0002548.1 mouse_genomes_project 6 39062058 39062343 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0002151.1 MGP_C3HHeJ_G0002072.1 mouse_genomes_project 6 152350707 152352180 - TEC TEC MGP_C3HHeJ_T0002013.1 MGP_C3HHeJ_G0001934.1 mouse_genomes_project 6 92202216 92203892 + TEC TEC MGP_C3HHeJ_T0080318.1 MGP_C3HHeJ_G0031136.1 mouse_genomes_project 6 139984742 140003977 - MGP_C3HHeJ_P0080318 Arhgdib protein_coding protein_coding MGP_C3HHeJ_T0080319.1 MGP_C3HHeJ_G0031136.1 mouse_genomes_project 6 139984742 140003733 - MGP_C3HHeJ_P0080319 Arhgdib protein_coding protein_coding MGP_C3HHeJ_T0080321.1 MGP_C3HHeJ_G0031136.1 mouse_genomes_project 6 139985088 140004117 - MGP_C3HHeJ_P0080321 Arhgdib protein_coding protein_coding MGP_C3HHeJ_T0080322.1 MGP_C3HHeJ_G0031136.1 mouse_genomes_project 6 139985299 140004086 - MGP_C3HHeJ_P0080322 Arhgdib protein_coding protein_coding MGP_C3HHeJ_T0080323.1 MGP_C3HHeJ_G0031136.1 mouse_genomes_project 6 139995068 140001821 - MGP_C3HHeJ_P0080323 Arhgdib protein_coding protein_coding MGP_C3HHeJ_T0015306.1 MGP_C3HHeJ_G0013410.1 mouse_genomes_project 6 105813038 105813534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077190.1 MGP_C3HHeJ_G0030434.1 mouse_genomes_project 6 50712130 50714545 - MGP_C3HHeJ_P0077190 Hoxa2 protein_coding protein_coding MGP_C3HHeJ_T0079503.1 MGP_C3HHeJ_G0030917.1 mouse_genomes_project 6 123048496 123051506 + MGP_C3HHeJ_P0079503 A2m protein_coding protein_coding MGP_C3HHeJ_T0079504.1 MGP_C3HHeJ_G0030917.1 mouse_genomes_project 6 123049348 123089307 + MGP_C3HHeJ_P0079504 A2m protein_coding protein_coding MGP_C3HHeJ_T0079505.1 MGP_C3HHeJ_G0030917.1 mouse_genomes_project 6 123068909 123071488 + A2m protein_coding retained_intron MGP_C3HHeJ_T0077610.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63837363 64465196 + MGP_C3HHeJ_P0077610 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077611.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63837372 64097031 + Cacna1c protein_coding processed_transcript MGP_C3HHeJ_T0077612.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63837394 64464631 + MGP_C3HHeJ_P0077612 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077613.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63837550 64471038 + MGP_C3HHeJ_P0077613 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077614.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63837550 64464386 + MGP_C3HHeJ_P0077614 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077615.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63926931 64464631 + MGP_C3HHeJ_P0077615 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077616.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927253 64465336 + MGP_C3HHeJ_P0077616 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077617.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927300 64465336 + MGP_C3HHeJ_P0077617 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077618.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927300 64465814 + MGP_C3HHeJ_P0077618 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077619.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464485 + MGP_C3HHeJ_P0077619 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077620.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464485 + MGP_C3HHeJ_P0077620 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077621.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464485 + MGP_C3HHeJ_P0077621 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077622.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464386 + MGP_C3HHeJ_P0077622 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077623.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464485 + MGP_C3HHeJ_P0077623 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077624.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464386 + MGP_C3HHeJ_P0077624 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077625.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464485 + MGP_C3HHeJ_P0077625 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077626.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63927514 64464485 + MGP_C3HHeJ_P0077626 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077627.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 63956320 64464479 + MGP_C3HHeJ_P0077627 Cacna1c protein_coding protein_coding MGP_C3HHeJ_T0077628.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 64295475 64465959 + Cacna1c protein_coding processed_transcript MGP_C3HHeJ_T0077629.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 64347046 64351977 + Cacna1c protein_coding retained_intron MGP_C3HHeJ_T0077630.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 64429215 64443957 + Cacna1c protein_coding processed_transcript MGP_C3HHeJ_T0077631.1 MGP_C3HHeJ_G0030540.1 mouse_genomes_project 6 64462843 64465974 + Cacna1c protein_coding processed_transcript MGP_C3HHeJ_T0076806.1 MGP_C3HHeJ_G0030331.1 mouse_genomes_project 6 39810845 39816106 - MGP_C3HHeJ_P0076806 Olfr459 protein_coding protein_coding MGP_C3HHeJ_T0076807.1 MGP_C3HHeJ_G0030331.1 mouse_genomes_project 6 39810845 39811954 - MGP_C3HHeJ_P0076807 Olfr459 protein_coding protein_coding MGP_C3HHeJ_T0001873.1 MGP_C3HHeJ_G0001795.1 mouse_genomes_project 6 1342458 1345268 - TEC TEC MGP_C3HHeJ_T0008512.1 MGP_C3HHeJ_G0006875.1 mouse_genomes_project 6 49893613 49906750 - Gm26677 lincRNA lincRNA MGP_C3HHeJ_T0078652.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97002225 97053290 - MGP_C3HHeJ_P0078652 Gfpt1 protein_coding protein_coding MGP_C3HHeJ_T0078653.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97006178 97053245 - MGP_C3HHeJ_P0078653 Gfpt1 protein_coding protein_coding MGP_C3HHeJ_T0078654.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97008064 97018871 - Gfpt1 protein_coding retained_intron MGP_C3HHeJ_T0078655.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97040098 97053286 - MGP_C3HHeJ_P0078655 Gfpt1 protein_coding protein_coding MGP_C3HHeJ_T0078656.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97040098 97053290 - MGP_C3HHeJ_P0078656 Gfpt1 protein_coding protein_coding MGP_C3HHeJ_T0078657.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97041574 97053286 - Gfpt1 protein_coding processed_transcript MGP_C3HHeJ_T0078658.1 MGP_C3HHeJ_G0030745.1 mouse_genomes_project 6 97050477 97053286 - Gfpt1 protein_coding retained_intron MGP_C3HHeJ_T0100793.1 MGP_C3HHeJ_G0038987.1 mouse_genomes_project 6 125503837 125503964 - Gm22724 snoRNA snoRNA MGP_C3HHeJ_T0010714.1 MGP_C3HHeJ_G0008847.1 mouse_genomes_project 6 102392428 102392502 + Mir7232 miRNA miRNA MGP_C3HHeJ_T0077399.1 MGP_C3HHeJ_G0030496.1 mouse_genomes_project 6 56326360 56362766 - MGP_C3HHeJ_P0077399 Ppm1k protein_coding protein_coding MGP_C3HHeJ_T0077400.1 MGP_C3HHeJ_G0030496.1 mouse_genomes_project 6 56340113 56342124 - MGP_C3HHeJ_P0077400 Ppm1k protein_coding protein_coding MGP_C3HHeJ_T0077401.1 MGP_C3HHeJ_G0030496.1 mouse_genomes_project 6 56361774 56362808 - Ppm1k protein_coding processed_transcript MGP_C3HHeJ_T0011575.1 MGP_C3HHeJ_G0009708.1 mouse_genomes_project 6 129925446 129925745 + Gm23098 misc_RNA misc_RNA MGP_C3HHeJ_T0015480.1 MGP_C3HHeJ_G0013584.1 mouse_genomes_project 6 152860761 152861206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015146.1 MGP_C3HHeJ_G0013250.1 mouse_genomes_project 6 46179948 46180345 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002107.1 MGP_C3HHeJ_G0002028.1 mouse_genomes_project 6 129851003 129853252 - TEC TEC MGP_C3HHeJ_T0011555.1 MGP_C3HHeJ_G0009688.1 mouse_genomes_project 6 50814713 50814772 + Gm27280 misc_RNA misc_RNA MGP_C3HHeJ_T0078977.1 MGP_C3HHeJ_G0030804.1 mouse_genomes_project 6 100948257 101024373 - MGP_C3HHeJ_P0078977 Slc4a5 protein_coding protein_coding MGP_C3HHeJ_T0078978.1 MGP_C3HHeJ_G0030804.1 mouse_genomes_project 6 100952697 101037013 - MGP_C3HHeJ_P0078978 Slc4a5 protein_coding protein_coding MGP_C3HHeJ_T0078979.1 MGP_C3HHeJ_G0030804.1 mouse_genomes_project 6 100956457 100965568 - Slc4a5 protein_coding processed_transcript MGP_C3HHeJ_T0078980.1 MGP_C3HHeJ_G0030804.1 mouse_genomes_project 6 100964751 100978852 - Slc4a5 protein_coding processed_transcript MGP_C3HHeJ_T0078981.1 MGP_C3HHeJ_G0030804.1 mouse_genomes_project 6 100997176 101024558 - Slc4a5 protein_coding processed_transcript MGP_C3HHeJ_T0005059.1 MGP_C3HHeJ_G0004310.1 mouse_genomes_project 6 151423762 151460969 - Far2os2 antisense antisense MGP_C3HHeJ_T0008634.1 MGP_C3HHeJ_G0006972.1 mouse_genomes_project 6 113850553 113871905 - Gm43291 lincRNA lincRNA MGP_C3HHeJ_T0005015.1 MGP_C3HHeJ_G0004273.1 mouse_genomes_project 6 129148388 129150467 + antisense antisense MGP_C3HHeJ_T0079577.1 MGP_C3HHeJ_G0030935.1 mouse_genomes_project 6 124621074 124638021 + MGP_C3HHeJ_P0079577 Clec4a3 protein_coding protein_coding MGP_C3HHeJ_T0079578.1 MGP_C3HHeJ_G0030935.1 mouse_genomes_project 6 124621203 124638020 + MGP_C3HHeJ_P0079578 Clec4a3 protein_coding protein_coding MGP_C3HHeJ_T0079579.1 MGP_C3HHeJ_G0030935.1 mouse_genomes_project 6 124621337 124634684 + MGP_C3HHeJ_P0079579 Clec4a3 protein_coding protein_coding MGP_C3HHeJ_T0098164.1 MGP_C3HHeJ_G0036376.1 mouse_genomes_project 6 88929892 88930035 + Gm24601 rRNA rRNA MGP_C3HHeJ_T0001940.1 MGP_C3HHeJ_G0001862.1 mouse_genomes_project 6 44317158 44320344 + TEC TEC MGP_C3HHeJ_T0015465.1 MGP_C3HHeJ_G0013569.1 mouse_genomes_project 6 145370983 145372053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002133.1 MGP_C3HHeJ_G0002054.1 mouse_genomes_project 6 143511283 143511953 + TEC TEC MGP_C3HHeJ_T0015166.1 MGP_C3HHeJ_G0013270.1 mouse_genomes_project 6 49253628 49254754 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077647.1 MGP_C3HHeJ_G0030545.1 mouse_genomes_project 6 64855300 64899371 + MGP_C3HHeJ_P0077647 Ret protein_coding protein_coding MGP_C3HHeJ_T0077648.1 MGP_C3HHeJ_G0030545.1 mouse_genomes_project 6 64855885 64902192 + MGP_C3HHeJ_P0077648 Ret protein_coding protein_coding MGP_C3HHeJ_T0015438.1 MGP_C3HHeJ_G0013542.1 mouse_genomes_project 6 134719780 134720231 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076787.1 MGP_C3HHeJ_G0030322.1 mouse_genomes_project 6 39424217 39499562 + MGP_C3HHeJ_P0076787 protein_coding protein_coding MGP_C3HHeJ_T0015315.1 MGP_C3HHeJ_G0013419.1 mouse_genomes_project 6 109207789 109208291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080174.1 MGP_C3HHeJ_G0031097.1 mouse_genomes_project 6 135672810 135673740 + MGP_C3HHeJ_P0080174 Tas2r113 protein_coding protein_coding MGP_C3HHeJ_T0075890.1 MGP_C3HHeJ_G0030141.1 mouse_genomes_project 6 4648068 4680409 + MGP_C3HHeJ_P0075890 C1galt1 protein_coding protein_coding MGP_C3HHeJ_T0078846.1 MGP_C3HHeJ_G0030783.1 mouse_genomes_project 6 99053697 99057159 + MGP_C3HHeJ_P0078846 Spr protein_coding protein_coding MGP_C3HHeJ_T0078847.1 MGP_C3HHeJ_G0030783.1 mouse_genomes_project 6 99053697 99067340 + MGP_C3HHeJ_P0078847 Spr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078848.1 MGP_C3HHeJ_G0030783.1 mouse_genomes_project 6 99053701 99056837 + MGP_C3HHeJ_P0078848 Spr protein_coding protein_coding MGP_C3HHeJ_T0078849.1 MGP_C3HHeJ_G0030783.1 mouse_genomes_project 6 99053707 99057150 + MGP_C3HHeJ_P0078849 Spr protein_coding protein_coding MGP_C3HHeJ_T0079297.1 MGP_C3HHeJ_G0030868.1 mouse_genomes_project 6 112687311 112696670 + Mrpl35 protein_coding processed_transcript MGP_C3HHeJ_T0079298.1 MGP_C3HHeJ_G0030868.1 mouse_genomes_project 6 112690490 112700737 + MGP_C3HHeJ_P0079298 Mrpl35 protein_coding protein_coding MGP_C3HHeJ_T0079299.1 MGP_C3HHeJ_G0030868.1 mouse_genomes_project 6 112690537 112698194 + MGP_C3HHeJ_P0079299 Mrpl35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015291.1 MGP_C3HHeJ_G0013395.1 mouse_genomes_project 6 99112259 99112803 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078298.1 MGP_C3HHeJ_G0030668.1 mouse_genomes_project 6 91005776 91025089 - A730049H05Rik protein_coding processed_transcript MGP_C3HHeJ_T0078299.1 MGP_C3HHeJ_G0030668.1 mouse_genomes_project 6 91009453 91037310 - MGP_C3HHeJ_P0078299 A730049H05Rik protein_coding protein_coding MGP_C3HHeJ_T0008632.1 MGP_C3HHeJ_G0006970.1 mouse_genomes_project 6 113255715 113264863 - Gm1070 lincRNA lincRNA MGP_C3HHeJ_T0098161.1 MGP_C3HHeJ_G0036373.1 mouse_genomes_project 6 59244858 59244977 + n-R5s162 rRNA rRNA MGP_C3HHeJ_T0001956.1 MGP_C3HHeJ_G0001878.1 mouse_genomes_project 6 55509647 55512206 + TEC TEC MGP_C3HHeJ_T0005020.1 MGP_C3HHeJ_G0004277.1 mouse_genomes_project 6 130014202 130024355 - Gm15870 antisense antisense MGP_C3HHeJ_T0008457.1 MGP_C3HHeJ_G0006838.1 mouse_genomes_project 6 28984835 29000456 + Gm14532 lincRNA lincRNA MGP_C3HHeJ_T0080661.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150192425 150202083 + Arntl2 protein_coding processed_transcript MGP_C3HHeJ_T0080662.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150192435 150229975 + MGP_C3HHeJ_P0080662 Arntl2 protein_coding protein_coding MGP_C3HHeJ_T0080663.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150202034 150229092 + MGP_C3HHeJ_P0080663 Arntl2 protein_coding protein_coding MGP_C3HHeJ_T0080664.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150202034 150229092 + MGP_C3HHeJ_P0080664 Arntl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080665.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150202034 150229092 + MGP_C3HHeJ_P0080665 Arntl2 protein_coding protein_coding MGP_C3HHeJ_T0080666.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150202034 150229092 + MGP_C3HHeJ_P0080666 Arntl2 protein_coding protein_coding MGP_C3HHeJ_T0080667.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150216753 150219455 + Arntl2 protein_coding retained_intron MGP_C3HHeJ_T0080668.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150218913 150220284 + Arntl2 protein_coding retained_intron MGP_C3HHeJ_T0080669.1 MGP_C3HHeJ_G0031195.1 mouse_genomes_project 6 150226973 150229968 + Arntl2 protein_coding retained_intron MGP_C3HHeJ_T0000158.1 MGP_C3HHeJ_G0000121.1 mouse_genomes_project 6 115255645 115256181 + MGP_C3HHeJ_P0000158 Igkv4-53 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000159.1 MGP_C3HHeJ_G0000121.1 mouse_genomes_project 6 115255893 115256181 + MGP_C3HHeJ_P0000159 Igkv4-53 IG_V_gene IG_V_gene MGP_C3HHeJ_T0004907.1 MGP_C3HHeJ_G0004204.1 mouse_genomes_project 6 69902957 69921333 + Gm15492 antisense antisense MGP_C3HHeJ_T0077906.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69517466 69580646 - MGP_C3HHeJ_P0077906 Irak2 protein_coding protein_coding MGP_C3HHeJ_T0077907.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69519448 69520642 - Irak2 protein_coding processed_transcript MGP_C3HHeJ_T0077908.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69519542 69522649 - Irak2 protein_coding retained_intron MGP_C3HHeJ_T0077909.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69519657 69546623 - Irak2 protein_coding retained_intron MGP_C3HHeJ_T0077910.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69519657 69580625 - MGP_C3HHeJ_P0077910 Irak2 protein_coding protein_coding MGP_C3HHeJ_T0077911.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69543367 69580577 - MGP_C3HHeJ_P0077911 Irak2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077912.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69543461 69547551 - Irak2 protein_coding processed_transcript MGP_C3HHeJ_T0077913.1 MGP_C3HHeJ_G0030594.1 mouse_genomes_project 6 69550391 69580612 - Irak2 protein_coding retained_intron MGP_C3HHeJ_T0080125.1 MGP_C3HHeJ_G0031068.1 mouse_genomes_project 6 132306267 132321644 - MGP_C3HHeJ_P0080125 Klra7 protein_coding protein_coding MGP_C3HHeJ_T0010729.1 MGP_C3HHeJ_G0008862.1 mouse_genomes_project 6 131206757 131206813 - Mir7649 miRNA miRNA MGP_C3HHeJ_T0079034.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101180407 101183868 - MGP_C3HHeJ_P0079034 Pcgf1 protein_coding protein_coding MGP_C3HHeJ_T0079035.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101180408 101181243 - Pcgf1 protein_coding retained_intron MGP_C3HHeJ_T0079036.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101180415 101183824 - MGP_C3HHeJ_P0079036 Pcgf1 protein_coding protein_coding MGP_C3HHeJ_T0079037.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101180505 101183523 - MGP_C3HHeJ_P0079037 Pcgf1 protein_coding protein_coding MGP_C3HHeJ_T0079038.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101180505 101183792 - MGP_C3HHeJ_P0079038 Pcgf1 protein_coding protein_coding MGP_C3HHeJ_T0079039.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101180505 101183584 - MGP_C3HHeJ_P0079039 Pcgf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079040.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101181552 101183496 - Pcgf1 protein_coding retained_intron MGP_C3HHeJ_T0079041.1 MGP_C3HHeJ_G0030816.1 mouse_genomes_project 6 101183218 101184345 - MGP_C3HHeJ_P0079041 Pcgf1 protein_coding protein_coding MGP_C3HHeJ_T0080506.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145851896 145967781 - MGP_C3HHeJ_P0080506 Abcc9 protein_coding protein_coding MGP_C3HHeJ_T0080507.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145851896 145967837 - MGP_C3HHeJ_P0080507 Abcc9 protein_coding protein_coding MGP_C3HHeJ_T0080508.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145851896 145967837 - MGP_C3HHeJ_P0080508 Abcc9 protein_coding protein_coding MGP_C3HHeJ_T0080509.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145853165 145967781 - MGP_C3HHeJ_P0080509 Abcc9 protein_coding protein_coding MGP_C3HHeJ_T0080510.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145858039 145967836 - MGP_C3HHeJ_P0080510 Abcc9 protein_coding protein_coding MGP_C3HHeJ_T0080511.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145898218 145967000 - MGP_C3HHeJ_P0080511 Abcc9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080512.1 MGP_C3HHeJ_G0031172.1 mouse_genomes_project 6 145956565 145967878 - MGP_C3HHeJ_P0080512 Abcc9 protein_coding protein_coding MGP_C3HHeJ_T0077959.1 MGP_C3HHeJ_G0030605.1 mouse_genomes_project 6 69792508 69801639 + MGP_C3HHeJ_P0077959 Cidec protein_coding protein_coding MGP_C3HHeJ_T0077960.1 MGP_C3HHeJ_G0030605.1 mouse_genomes_project 6 69792629 69798721 + MGP_C3HHeJ_P0077960 Cidec protein_coding protein_coding MGP_C3HHeJ_T0015383.1 MGP_C3HHeJ_G0013487.1 mouse_genomes_project 6 122952589 122952914 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078901.1 MGP_C3HHeJ_G0030789.1 mouse_genomes_project 6 100410287 100435545 + MGP_C3HHeJ_P0078901 Paip2b protein_coding protein_coding MGP_C3HHeJ_T0078902.1 MGP_C3HHeJ_G0030789.1 mouse_genomes_project 6 100410315 100429175 + Paip2b protein_coding retained_intron MGP_C3HHeJ_T0078903.1 MGP_C3HHeJ_G0030789.1 mouse_genomes_project 6 100410315 100432320 + Paip2b protein_coding retained_intron MGP_C3HHeJ_T0078904.1 MGP_C3HHeJ_G0030789.1 mouse_genomes_project 6 100410328 100410572 + Paip2b protein_coding retained_intron MGP_C3HHeJ_T0078905.1 MGP_C3HHeJ_G0030789.1 mouse_genomes_project 6 100431833 100433371 + Paip2b protein_coding retained_intron MGP_C3HHeJ_T0098521.1 MGP_C3HHeJ_G0036722.1 mouse_genomes_project 6 38048320 38058949 + Gm26638 sense_intronic sense_intronic MGP_C3HHeJ_T0078647.1 MGP_C3HHeJ_G0030744.1 mouse_genomes_project 6 96980435 96988564 - MGP_C3HHeJ_P0078647 D6Ertd527e protein_coding protein_coding MGP_C3HHeJ_T0078648.1 MGP_C3HHeJ_G0030744.1 mouse_genomes_project 6 96980436 96988564 - MGP_C3HHeJ_P0078648 D6Ertd527e protein_coding protein_coding MGP_C3HHeJ_T0078649.1 MGP_C3HHeJ_G0030744.1 mouse_genomes_project 6 96980492 96988566 - MGP_C3HHeJ_P0078649 D6Ertd527e protein_coding protein_coding MGP_C3HHeJ_T0078650.1 MGP_C3HHeJ_G0030744.1 mouse_genomes_project 6 96982025 96988530 - D6Ertd527e protein_coding processed_transcript MGP_C3HHeJ_T0078651.1 MGP_C3HHeJ_G0030744.1 mouse_genomes_project 6 96982033 96988499 - D6Ertd527e protein_coding processed_transcript MGP_C3HHeJ_T0004992.1 MGP_C3HHeJ_G0004252.1 mouse_genomes_project 6 112109203 112110633 + Gm45051 antisense antisense MGP_C3HHeJ_T0008479.1 MGP_C3HHeJ_G0006854.1 mouse_genomes_project 6 33072160 33078137 + 1700065J11Rik lincRNA lincRNA MGP_C3HHeJ_T0078621.1 MGP_C3HHeJ_G0030735.1 mouse_genomes_project 6 96316923 96342036 - MGP_C3HHeJ_P0078621 Efcc1 protein_coding protein_coding MGP_C3HHeJ_T0078622.1 MGP_C3HHeJ_G0030735.1 mouse_genomes_project 6 96317380 96342060 - MGP_C3HHeJ_P0078622 Efcc1 protein_coding protein_coding MGP_C3HHeJ_T0078623.1 MGP_C3HHeJ_G0030735.1 mouse_genomes_project 6 96318069 96319310 - Efcc1 protein_coding retained_intron MGP_C3HHeJ_T0078624.1 MGP_C3HHeJ_G0030735.1 mouse_genomes_project 6 96320935 96340120 - Efcc1 protein_coding processed_transcript MGP_C3HHeJ_T0078625.1 MGP_C3HHeJ_G0030735.1 mouse_genomes_project 6 96338830 96342060 - Efcc1 protein_coding retained_intron MGP_C3HHeJ_T0077890.1 MGP_C3HHeJ_G0030591.1 mouse_genomes_project 6 69469120 69482057 + MGP_C3HHeJ_P0077890 Sec13 protein_coding protein_coding MGP_C3HHeJ_T0077891.1 MGP_C3HHeJ_G0030591.1 mouse_genomes_project 6 69469136 69470735 + Sec13 protein_coding retained_intron MGP_C3HHeJ_T0077892.1 MGP_C3HHeJ_G0030591.1 mouse_genomes_project 6 69474793 69479498 + Sec13 protein_coding retained_intron MGP_C3HHeJ_T0077893.1 MGP_C3HHeJ_G0030591.1 mouse_genomes_project 6 69474793 69479664 + Sec13 protein_coding retained_intron MGP_C3HHeJ_T0002076.1 MGP_C3HHeJ_G0001997.1 mouse_genomes_project 6 106982325 106983182 + TEC TEC MGP_C3HHeJ_T0079342.1 MGP_C3HHeJ_G0030878.1 mouse_genomes_project 6 113358544 113363754 - MGP_C3HHeJ_P0079342 Fabp1 protein_coding protein_coding MGP_C3HHeJ_T0080455.1 MGP_C3HHeJ_G0031159.1 mouse_genomes_project 6 145058906 145112698 - MGP_C3HHeJ_P0080455 Slco1a4 protein_coding protein_coding MGP_C3HHeJ_T0080456.1 MGP_C3HHeJ_G0031159.1 mouse_genomes_project 6 145060188 145101996 - MGP_C3HHeJ_P0080456 Slco1a4 protein_coding protein_coding MGP_C3HHeJ_T0080457.1 MGP_C3HHeJ_G0031159.1 mouse_genomes_project 6 145090460 145112726 - MGP_C3HHeJ_P0080457 Slco1a4 protein_coding protein_coding MGP_C3HHeJ_T0080458.1 MGP_C3HHeJ_G0031159.1 mouse_genomes_project 6 145107533 145110209 - Slco1a4 protein_coding retained_intron MGP_C3HHeJ_T0099510.1 MGP_C3HHeJ_G0037704.1 mouse_genomes_project 6 32980303 32980459 + Gm23435 snRNA snRNA MGP_C3HHeJ_T0015279.1 MGP_C3HHeJ_G0013383.1 mouse_genomes_project 6 95132558 95133081 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015452.1 MGP_C3HHeJ_G0013556.1 mouse_genomes_project 6 139489215 139490230 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005056.1 MGP_C3HHeJ_G0004308.1 mouse_genomes_project 6 150385380 150387038 - Gm44085 antisense antisense MGP_C3HHeJ_T0077112.1 MGP_C3HHeJ_G0030418.1 mouse_genomes_project 6 47816336 47823992 + MGP_C3HHeJ_P0077112 Fam221a protein_coding protein_coding MGP_C3HHeJ_T0077113.1 MGP_C3HHeJ_G0030418.1 mouse_genomes_project 6 47816349 47837225 + MGP_C3HHeJ_P0077113 Fam221a protein_coding protein_coding MGP_C3HHeJ_T0077114.1 MGP_C3HHeJ_G0030418.1 mouse_genomes_project 6 47826627 47832727 + Fam221a protein_coding processed_transcript MGP_C3HHeJ_T0077115.1 MGP_C3HHeJ_G0030418.1 mouse_genomes_project 6 47832523 47837613 + Fam221a protein_coding retained_intron MGP_C3HHeJ_T0077116.1 MGP_C3HHeJ_G0030418.1 mouse_genomes_project 6 47835814 47837558 + Fam221a protein_coding retained_intron MGP_C3HHeJ_T0076966.1 MGP_C3HHeJ_G0030384.1 mouse_genomes_project 6 46349607 46373506 - MGP_C3HHeJ_P0076966 Zfp777 protein_coding protein_coding MGP_C3HHeJ_T0076967.1 MGP_C3HHeJ_G0030384.1 mouse_genomes_project 6 46349750 46373509 - MGP_C3HHeJ_P0076967 Zfp777 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076968.1 MGP_C3HHeJ_G0030384.1 mouse_genomes_project 6 46354785 46369638 - MGP_C3HHeJ_P0076968 Zfp777 protein_coding protein_coding MGP_C3HHeJ_T0076969.1 MGP_C3HHeJ_G0030384.1 mouse_genomes_project 6 46369557 46373506 - MGP_C3HHeJ_P0076969 Zfp777 protein_coding protein_coding MGP_C3HHeJ_T0076970.1 MGP_C3HHeJ_G0030384.1 mouse_genomes_project 6 46369839 46373186 - MGP_C3HHeJ_P0076970 Zfp777 protein_coding protein_coding MGP_C3HHeJ_T0101451.1 MGP_C3HHeJ_G0039464.1 mouse_genomes_project 6 131230969 131247110 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101452.1 MGP_C3HHeJ_G0039464.1 mouse_genomes_project 6 131231057 131247031 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101239.1 MGP_C3HHeJ_G0039366.1 mouse_genomes_project 6 9004504 9015540 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101240.1 MGP_C3HHeJ_G0039366.1 mouse_genomes_project 6 9004696 9005256 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0015059.1 MGP_C3HHeJ_G0013163.1 mouse_genomes_project 6 5216211 5217995 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000177.1 MGP_C3HHeJ_G0000135.1 mouse_genomes_project 6 116344540 116345013 - MGP_C3HHeJ_P0000177 Igkv12-98 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000178.1 MGP_C3HHeJ_G0000135.1 mouse_genomes_project 6 116344540 116345013 - MGP_C3HHeJ_P0000178 Igkv12-98 IG_V_gene IG_V_gene MGP_C3HHeJ_T0077529.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 62955345 63081047 + MGP_C3HHeJ_P0077529 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077530.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 62955362 63081045 + MGP_C3HHeJ_P0077530 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077531.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 62955362 63081045 + MGP_C3HHeJ_P0077531 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077532.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 62955410 63051564 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077533.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 62956358 63080395 + MGP_C3HHeJ_P0077533 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077534.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 62956358 63080395 + MGP_C3HHeJ_P0077534 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077535.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63009346 63032325 + Wnk1 protein_coding processed_transcript MGP_C3HHeJ_T0077536.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63011708 63052345 + MGP_C3HHeJ_P0077536 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077537.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63011749 63051564 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077538.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63020427 63032314 + Wnk1 protein_coding processed_transcript MGP_C3HHeJ_T0077539.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63028812 63031132 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077540.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63033215 63053563 + MGP_C3HHeJ_P0077540 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077541.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63040344 63041770 + MGP_C3HHeJ_P0077541 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077542.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63041147 63049118 + MGP_C3HHeJ_P0077542 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077543.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63049043 63053556 + MGP_C3HHeJ_P0077543 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077544.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63053215 63054891 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077545.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63055065 63060885 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077546.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63056787 63067640 + MGP_C3HHeJ_P0077546 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077547.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63057108 63067485 + MGP_C3HHeJ_P0077547 Wnk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077548.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63064998 63067365 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077549.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63067450 63077891 + MGP_C3HHeJ_P0077549 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077550.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63068650 63078437 + MGP_C3HHeJ_P0077550 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077551.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63070770 63075183 + MGP_C3HHeJ_P0077551 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077552.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63070771 63075183 + MGP_C3HHeJ_P0077552 Wnk1 protein_coding protein_coding MGP_C3HHeJ_T0077553.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63071263 63074248 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0077554.1 MGP_C3HHeJ_G0030531.1 mouse_genomes_project 6 63077754 63081047 + Wnk1 protein_coding retained_intron MGP_C3HHeJ_T0076215.1 MGP_C3HHeJ_G0030208.1 mouse_genomes_project 6 26102034 26295971 - MGP_C3HHeJ_P0076215 Lrrc4 protein_coding protein_coding MGP_C3HHeJ_T0076220.1 MGP_C3HHeJ_G0030208.1 mouse_genomes_project 6 26293758 26297373 - MGP_C3HHeJ_P0076220 Lrrc4 protein_coding protein_coding MGP_C3HHeJ_T0015337.1 MGP_C3HHeJ_G0013441.1 mouse_genomes_project 6 116799565 116800257 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077794.1 MGP_C3HHeJ_G0030575.1 mouse_genomes_project 6 67381493 67415523 + MGP_C3HHeJ_P0077794 Tmem40 protein_coding protein_coding MGP_C3HHeJ_T0077795.1 MGP_C3HHeJ_G0030575.1 mouse_genomes_project 6 67384490 67416025 + MGP_C3HHeJ_P0077795 Tmem40 protein_coding protein_coding MGP_C3HHeJ_T0077796.1 MGP_C3HHeJ_G0030575.1 mouse_genomes_project 6 67384762 67416015 + MGP_C3HHeJ_P0077796 Tmem40 protein_coding protein_coding MGP_C3HHeJ_T0077797.1 MGP_C3HHeJ_G0030575.1 mouse_genomes_project 6 67390636 67415491 + MGP_C3HHeJ_P0077797 Tmem40 protein_coding protein_coding MGP_C3HHeJ_T0077798.1 MGP_C3HHeJ_G0030575.1 mouse_genomes_project 6 67410513 67415623 + Tmem40 protein_coding retained_intron MGP_C3HHeJ_T0077799.1 MGP_C3HHeJ_G0030575.1 mouse_genomes_project 6 67410851 67416013 + Tmem40 protein_coding processed_transcript MGP_C3HHeJ_T0010715.1 MGP_C3HHeJ_G0008848.1 mouse_genomes_project 6 109918804 109918914 + Gm22254 miRNA miRNA MGP_C3HHeJ_T0077029.1 MGP_C3HHeJ_G0030396.1 mouse_genomes_project 6 46993337 47013653 + MGP_C3HHeJ_P0077029 Zfp775 protein_coding protein_coding MGP_C3HHeJ_T0077030.1 MGP_C3HHeJ_G0030396.1 mouse_genomes_project 6 46996894 47010237 + MGP_C3HHeJ_P0077030 Zfp775 protein_coding protein_coding MGP_C3HHeJ_T0077031.1 MGP_C3HHeJ_G0030396.1 mouse_genomes_project 6 47003655 47013653 + MGP_C3HHeJ_P0077031 Zfp775 protein_coding protein_coding MGP_C3HHeJ_T0015098.1 MGP_C3HHeJ_G0013202.1 mouse_genomes_project 6 20445403 20447377 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002041.1 MGP_C3HHeJ_G0001962.1 mouse_genomes_project 6 96952032 96954140 + TEC TEC MGP_C3HHeJ_T0077174.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50053378 50122252 + MGP_C3HHeJ_P0077174 Snx10 protein_coding protein_coding MGP_C3HHeJ_T0077175.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50053459 50100369 + Snx10 protein_coding retained_intron MGP_C3HHeJ_T0077176.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50053735 50111211 + MGP_C3HHeJ_P0077176 Snx10 protein_coding protein_coding MGP_C3HHeJ_T0077177.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50053760 50120009 + MGP_C3HHeJ_P0077177 Snx10 protein_coding protein_coding MGP_C3HHeJ_T0077178.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50073997 50122243 + MGP_C3HHeJ_P0077178 Snx10 protein_coding protein_coding MGP_C3HHeJ_T0077179.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50073998 50120645 + MGP_C3HHeJ_P0077179 Snx10 protein_coding protein_coding MGP_C3HHeJ_T0077180.1 MGP_C3HHeJ_G0030431.1 mouse_genomes_project 6 50074040 50120616 + MGP_C3HHeJ_P0077180 Snx10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0001986.1 MGP_C3HHeJ_G0001907.1 mouse_genomes_project 6 79961900 79965492 - TEC TEC MGP_C3HHeJ_T0076863.1 MGP_C3HHeJ_G0030347.1 mouse_genomes_project 6 40435774 40436867 + MGP_C3HHeJ_P0076863 Tas2r135 protein_coding protein_coding MGP_C3HHeJ_T0005027.1 MGP_C3HHeJ_G0004282.1 mouse_genomes_project 6 131291514 131293979 - Gm44000 antisense antisense MGP_C3HHeJ_T0098535.1 MGP_C3HHeJ_G0036736.1 mouse_genomes_project 6 148012236 148014563 - Sox5it sense_intronic sense_intronic MGP_C3HHeJ_T0001963.1 MGP_C3HHeJ_G0001885.1 mouse_genomes_project 6 61059278 61061310 + TEC TEC MGP_C3HHeJ_T0100764.1 MGP_C3HHeJ_G0038958.1 mouse_genomes_project 6 64942904 64943036 + Gm23908 snoRNA snoRNA MGP_C3HHeJ_T0078850.1 MGP_C3HHeJ_G0030784.1 mouse_genomes_project 6 99071621 99094077 + Gm5878 protein_coding lincRNA MGP_C3HHeJ_T0078851.1 MGP_C3HHeJ_G0030784.1 mouse_genomes_project 6 99071652 99094077 + MGP_C3HHeJ_P0078851 Gm5878 protein_coding protein_coding MGP_C3HHeJ_T0002011.1 MGP_C3HHeJ_G0001932.1 mouse_genomes_project 6 92180497 92182440 + TEC TEC MGP_C3HHeJ_T0078127.1 MGP_C3HHeJ_G0030634.1 mouse_genomes_project 6 76685592 76727059 + MGP_C3HHeJ_P0078127 Il5ra protein_coding protein_coding MGP_C3HHeJ_T0078128.1 MGP_C3HHeJ_G0030634.1 mouse_genomes_project 6 76685681 76726811 + MGP_C3HHeJ_P0078128 Il5ra protein_coding protein_coding MGP_C3HHeJ_T0078129.1 MGP_C3HHeJ_G0030634.1 mouse_genomes_project 6 76689526 76725443 + MGP_C3HHeJ_P0078129 Il5ra protein_coding protein_coding MGP_C3HHeJ_T0008541.1 MGP_C3HHeJ_G0006898.1 mouse_genomes_project 6 64813838 64815596 + 1700069P05Rik lincRNA lincRNA MGP_C3HHeJ_T0079167.1 MGP_C3HHeJ_G0030847.1 mouse_genomes_project 6 111527501 111588141 + MGP_C3HHeJ_P0079167 Kcmf1 protein_coding protein_coding MGP_C3HHeJ_T0079168.1 MGP_C3HHeJ_G0030847.1 mouse_genomes_project 6 111527575 111590017 + MGP_C3HHeJ_P0079168 Kcmf1 protein_coding protein_coding MGP_C3HHeJ_T0079169.1 MGP_C3HHeJ_G0030847.1 mouse_genomes_project 6 111572236 111582892 + Kcmf1 protein_coding processed_transcript MGP_C3HHeJ_T0079170.1 MGP_C3HHeJ_G0030847.1 mouse_genomes_project 6 111581714 111584758 + Kcmf1 protein_coding retained_intron MGP_C3HHeJ_T0100759.1 MGP_C3HHeJ_G0038953.1 mouse_genomes_project 6 55288432 55288564 - Gm22493 snoRNA snoRNA MGP_C3HHeJ_T0099544.1 MGP_C3HHeJ_G0037738.1 mouse_genomes_project 6 122005840 122005946 + Gm22212 snRNA snRNA MGP_C3HHeJ_T0015139.1 MGP_C3HHeJ_G0013243.1 mouse_genomes_project 6 42813219 42813364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015447.1 MGP_C3HHeJ_G0013551.1 mouse_genomes_project 6 136781760 136782429 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077322.1 MGP_C3HHeJ_G0030464.1 mouse_genomes_project 6 53824489 53829801 - MGP_C3HHeJ_P0077322 Inmt protein_coding protein_coding MGP_C3HHeJ_T0077323.1 MGP_C3HHeJ_G0030464.1 mouse_genomes_project 6 53826665 53829772 - Inmt protein_coding retained_intron MGP_C3HHeJ_T0015230.1 MGP_C3HHeJ_G0013334.1 mouse_genomes_project 6 74003277 74003725 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002146.1 MGP_C3HHeJ_G0002067.1 mouse_genomes_project 6 150958033 150959542 - TEC TEC MGP_C3HHeJ_T0001903.1 MGP_C3HHeJ_G0001825.1 mouse_genomes_project 6 26013492 26016390 + TEC TEC MGP_C3HHeJ_T0077463.1 MGP_C3HHeJ_G0030516.1 mouse_genomes_project 6 59774944 59876211 - MGP_C3HHeJ_P0077463 Snca protein_coding protein_coding MGP_C3HHeJ_T0077464.1 MGP_C3HHeJ_G0030516.1 mouse_genomes_project 6 59774948 59875360 - MGP_C3HHeJ_P0077464 Snca protein_coding protein_coding MGP_C3HHeJ_T0077466.1 MGP_C3HHeJ_G0030516.1 mouse_genomes_project 6 59855032 59873912 - Snca protein_coding processed_transcript MGP_C3HHeJ_T0077467.1 MGP_C3HHeJ_G0030516.1 mouse_genomes_project 6 59861044 59875228 - Snca protein_coding retained_intron MGP_C3HHeJ_T0077425.1 MGP_C3HHeJ_G0030507.1 mouse_genomes_project 6 57124191 57125276 + MGP_C3HHeJ_P0077425 Vmn1r28 protein_coding protein_coding MGP_C3HHeJ_T0076339.1 MGP_C3HHeJ_G0030228.1 mouse_genomes_project 6 27457399 27499827 + MGP_C3HHeJ_P0076339 Strip2 protein_coding protein_coding MGP_C3HHeJ_T0076340.1 MGP_C3HHeJ_G0030228.1 mouse_genomes_project 6 27457400 27485937 + Strip2 protein_coding retained_intron MGP_C3HHeJ_T0076341.1 MGP_C3HHeJ_G0030228.1 mouse_genomes_project 6 27457400 27497924 + Strip2 protein_coding retained_intron MGP_C3HHeJ_T0076342.1 MGP_C3HHeJ_G0030228.1 mouse_genomes_project 6 27457400 27499833 + MGP_C3HHeJ_P0076342 Strip2 protein_coding protein_coding MGP_C3HHeJ_T0076343.1 MGP_C3HHeJ_G0030228.1 mouse_genomes_project 6 27457400 27487459 + MGP_C3HHeJ_P0076343 Strip2 protein_coding protein_coding MGP_C3HHeJ_T0002054.1 MGP_C3HHeJ_G0001975.1 mouse_genomes_project 6 100935443 100938242 + TEC TEC MGP_C3HHeJ_T0098529.1 MGP_C3HHeJ_G0036730.1 mouse_genomes_project 6 100275703 100278666 - Gm43920 sense_intronic sense_intronic MGP_C3HHeJ_T0076122.1 MGP_C3HHeJ_G0030182.1 mouse_genomes_project 6 20346309 20411034 - MGP_C3HHeJ_P0076122 Aass protein_coding protein_coding MGP_C3HHeJ_T0076123.1 MGP_C3HHeJ_G0030182.1 mouse_genomes_project 6 20367748 20403889 - Aass protein_coding processed_transcript MGP_C3HHeJ_T0076124.1 MGP_C3HHeJ_G0030182.1 mouse_genomes_project 6 20367748 20403921 - MGP_C3HHeJ_P0076124 Aass protein_coding protein_coding MGP_C3HHeJ_T0076125.1 MGP_C3HHeJ_G0030182.1 mouse_genomes_project 6 20386086 20410963 - Aass protein_coding processed_transcript MGP_C3HHeJ_T0008707.1 MGP_C3HHeJ_G0007025.1 mouse_genomes_project 6 152459726 152462458 + Gm26540 lincRNA lincRNA MGP_C3HHeJ_T0079670.1 MGP_C3HHeJ_G0030964.1 mouse_genomes_project 6 126639811 126641321 - Grcc10 protein_coding processed_transcript MGP_C3HHeJ_T0079671.1 MGP_C3HHeJ_G0030964.1 mouse_genomes_project 6 126639811 126642000 - MGP_C3HHeJ_P0079671 Grcc10 protein_coding protein_coding MGP_C3HHeJ_T0079672.1 MGP_C3HHeJ_G0030964.1 mouse_genomes_project 6 126639814 126641691 - Grcc10 protein_coding retained_intron MGP_C3HHeJ_T0079673.1 MGP_C3HHeJ_G0030964.1 mouse_genomes_project 6 126639815 126641341 - Grcc10 protein_coding retained_intron MGP_C3HHeJ_T0076781.1 MGP_C3HHeJ_G0030316.1 mouse_genomes_project 6 38912185 38915681 - MGP_C3HHeJ_P0076781 Gm4744 protein_coding protein_coding MGP_C3HHeJ_T0080442.1 MGP_C3HHeJ_G0031154.1 mouse_genomes_project 6 143949850 143978382 + MGP_C3HHeJ_P0080442 Gm11077 protein_coding protein_coding MGP_C3HHeJ_T0002545.1 MGP_C3HHeJ_G0002455.1 mouse_genomes_project 6 39574454 39574502 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0004882.1 MGP_C3HHeJ_G0004183.1 mouse_genomes_project 6 50722601 50723779 + Gm15050 antisense antisense MGP_C3HHeJ_T0015477.1 MGP_C3HHeJ_G0013581.1 mouse_genomes_project 6 152474897 152475309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100773.1 MGP_C3HHeJ_G0038967.1 mouse_genomes_project 6 86563637 86563768 + Gm26175 snoRNA snoRNA MGP_C3HHeJ_T0080544.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147116432 147510794 - MGP_C3HHeJ_P0080544 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080545.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147116432 147510636 - MGP_C3HHeJ_P0080545 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080546.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147120337 147510710 - MGP_C3HHeJ_P0080546 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080547.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147121557 147239035 - MGP_C3HHeJ_P0080547 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080548.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147121692 147510608 - MGP_C3HHeJ_P0080548 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080549.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147128198 147239030 - Sox5 protein_coding processed_transcript MGP_C3HHeJ_T0080550.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147132467 148128399 - Sox5 protein_coding retained_intron MGP_C3HHeJ_T0080551.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147133543 147239026 - MGP_C3HHeJ_P0080551 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080552.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147151080 147239017 - MGP_C3HHeJ_P0080552 Sox5 protein_coding protein_coding MGP_C3HHeJ_T0080553.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147196618 147505577 - Sox5 protein_coding retained_intron MGP_C3HHeJ_T0080554.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147317698 147510636 - Sox5 protein_coding retained_intron MGP_C3HHeJ_T0080555.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147404982 148128341 - Sox5 protein_coding processed_transcript MGP_C3HHeJ_T0080556.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147417075 147505207 - Sox5 protein_coding processed_transcript MGP_C3HHeJ_T0080557.1 MGP_C3HHeJ_G0031178.1 mouse_genomes_project 6 147455751 147510794 - Sox5 protein_coding retained_intron MGP_C3HHeJ_T0015180.1 MGP_C3HHeJ_G0013284.1 mouse_genomes_project 6 57297534 57297698 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102127.1 MGP_C3HHeJ_G0040091.1 mouse_genomes_project 6 133569499 133582997 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015204.1 MGP_C3HHeJ_G0013308.1 mouse_genomes_project 6 66132810 66133219 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000294.1 MGP_C3HHeJ_G0000244.1 mouse_genomes_project 6 116615668 116615966 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0077845.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68208462 68319102 + MGP_C3HHeJ_P0077845 Vgll4 protein_coding protein_coding MGP_C3HHeJ_T0077846.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68209276 68319545 + MGP_C3HHeJ_P0077846 Vgll4 protein_coding protein_coding MGP_C3HHeJ_T0077847.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68259534 68320443 + MGP_C3HHeJ_P0077847 Vgll4 protein_coding protein_coding MGP_C3HHeJ_T0077848.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68259539 68261302 + Vgll4 protein_coding retained_intron MGP_C3HHeJ_T0077849.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68307987 68321253 + Vgll4 protein_coding processed_transcript MGP_C3HHeJ_T0077850.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68308074 68319675 + Vgll4 protein_coding processed_transcript MGP_C3HHeJ_T0077851.1 MGP_C3HHeJ_G0030585.1 mouse_genomes_project 6 68317121 68319675 + Vgll4 protein_coding processed_transcript MGP_C3HHeJ_T0100795.1 MGP_C3HHeJ_G0038989.1 mouse_genomes_project 6 125756163 125756270 + Gm22763 snoRNA snoRNA MGP_C3HHeJ_T0000157.1 MGP_C3HHeJ_G0000120.1 mouse_genomes_project 6 114984616 114985182 + MGP_C3HHeJ_P0000157 Igkv5-48 IG_V_gene IG_V_gene MGP_C3HHeJ_T0076866.1 MGP_C3HHeJ_G0030350.1 mouse_genomes_project 6 40496521 40497872 - MGP_C3HHeJ_P0076866 Olfr457 protein_coding protein_coding MGP_C3HHeJ_T0076867.1 MGP_C3HHeJ_G0030350.1 mouse_genomes_project 6 40496594 40502007 - MGP_C3HHeJ_P0076867 Olfr457 protein_coding protein_coding MGP_C3HHeJ_T0076868.1 MGP_C3HHeJ_G0030350.1 mouse_genomes_project 6 40497162 40501997 - MGP_C3HHeJ_P0076868 Olfr457 protein_coding protein_coding MGP_C3HHeJ_T0079556.1 MGP_C3HHeJ_G0030927.1 mouse_genomes_project 6 124239371 124244038 - MGP_C3HHeJ_P0079556 Gdf3 protein_coding protein_coding MGP_C3HHeJ_T0079557.1 MGP_C3HHeJ_G0030927.1 mouse_genomes_project 6 124241977 124243775 - Gdf3 protein_coding processed_transcript MGP_C3HHeJ_T0004900.1 MGP_C3HHeJ_G0004197.1 mouse_genomes_project 6 67304665 67311073 - antisense antisense MGP_C3HHeJ_T0004893.1 MGP_C3HHeJ_G0004190.1 mouse_genomes_project 6 53317343 53318331 - Gm28402 antisense antisense MGP_C3HHeJ_T0004896.1 MGP_C3HHeJ_G0004193.1 mouse_genomes_project 6 57886536 57922941 + BB365896 antisense antisense MGP_C3HHeJ_T0099531.1 MGP_C3HHeJ_G0037725.1 mouse_genomes_project 6 87161011 87161115 + Gm26011 snRNA snRNA MGP_C3HHeJ_T0001901.1 MGP_C3HHeJ_G0001823.1 mouse_genomes_project 6 25655831 25659759 - TEC TEC MGP_C3HHeJ_T0015247.1 MGP_C3HHeJ_G0013351.1 mouse_genomes_project 6 81922305 81922761 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015395.1 MGP_C3HHeJ_G0013499.1 mouse_genomes_project 6 124453380 124454259 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076896.1 MGP_C3HHeJ_G0030365.1 mouse_genomes_project 6 41201125 41212886 + MGP_C3HHeJ_P0076896 protein_coding protein_coding MGP_C3HHeJ_T0076898.1 MGP_C3HHeJ_G0030365.1 mouse_genomes_project 6 41211953 41212886 + MGP_C3HHeJ_P0076898 protein_coding protein_coding MGP_C3HHeJ_T0000258.1 MGP_C3HHeJ_G0000208.1 mouse_genomes_project 6 41014709 41015167 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076788.1 MGP_C3HHeJ_G0030323.1 mouse_genomes_project 6 39424239 39499587 + MGP_C3HHeJ_P0076788 protein_coding protein_coding MGP_C3HHeJ_T0004905.1 MGP_C3HHeJ_G0004202.1 mouse_genomes_project 6 69577584 69578551 + Gm43964 antisense antisense MGP_C3HHeJ_T0000304.1 MGP_C3HHeJ_G0000254.1 mouse_genomes_project 6 117298151 117298606 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015097.1 MGP_C3HHeJ_G0013201.1 mouse_genomes_project 6 20436911 20438884 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079581.1 MGP_C3HHeJ_G0030937.1 mouse_genomes_project 6 124713953 124733079 + MGP_C3HHeJ_P0079581 Clec4b1 protein_coding protein_coding MGP_C3HHeJ_T0079582.1 MGP_C3HHeJ_G0030937.1 mouse_genomes_project 6 124713989 124733090 + MGP_C3HHeJ_P0079582 Clec4b1 protein_coding protein_coding MGP_C3HHeJ_T0015439.1 MGP_C3HHeJ_G0013543.1 mouse_genomes_project 6 135175423 135175895 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002621.1 MGP_C3HHeJ_G0002514.1 mouse_genomes_project 6 39168076 39168750 + MGP_C3HHeJ_P0002621 Trbv19 TR_V_gene TR_V_gene MGP_C3HHeJ_T0080689.1 MGP_C3HHeJ_G0031200.1 mouse_genomes_project 6 150437222 150445039 + Mrps35 protein_coding retained_intron MGP_C3HHeJ_T0080690.1 MGP_C3HHeJ_G0031200.1 mouse_genomes_project 6 150437222 150470986 + MGP_C3HHeJ_P0080690 Mrps35 protein_coding protein_coding MGP_C3HHeJ_T0080691.1 MGP_C3HHeJ_G0031200.1 mouse_genomes_project 6 150439053 150450326 + MGP_C3HHeJ_P0080691 Mrps35 protein_coding protein_coding MGP_C3HHeJ_T0080692.1 MGP_C3HHeJ_G0031200.1 mouse_genomes_project 6 150454692 150466118 + Mrps35 protein_coding processed_transcript MGP_C3HHeJ_T0080693.1 MGP_C3HHeJ_G0031200.1 mouse_genomes_project 6 150455709 150466197 + Mrps35 protein_coding processed_transcript MGP_C3HHeJ_T0076406.1 MGP_C3HHeJ_G0030238.1 mouse_genomes_project 6 28215687 28221834 + MGP_C3HHeJ_P0076406 Cpa1 protein_coding protein_coding MGP_C3HHeJ_T0076407.1 MGP_C3HHeJ_G0030238.1 mouse_genomes_project 6 28216811 28218345 + Cpa1 protein_coding retained_intron MGP_C3HHeJ_T0002667.1 MGP_C3HHeJ_G0002549.1 mouse_genomes_project 6 39065189 39065479 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0015126.1 MGP_C3HHeJ_G0013230.1 mouse_genomes_project 6 38986444 38986632 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002014.1 MGP_C3HHeJ_G0001935.1 mouse_genomes_project 6 92214551 92215577 + TEC TEC MGP_C3HHeJ_T0077036.1 MGP_C3HHeJ_G0030398.1 mouse_genomes_project 6 47037808 47050376 + MGP_C3HHeJ_P0077036 Gimap8 protein_coding protein_coding MGP_C3HHeJ_T0077037.1 MGP_C3HHeJ_G0030398.1 mouse_genomes_project 6 47037935 47052345 + MGP_C3HHeJ_P0077037 Gimap8 protein_coding protein_coding MGP_C3HHeJ_T0077038.1 MGP_C3HHeJ_G0030398.1 mouse_genomes_project 6 47037958 47050964 + MGP_C3HHeJ_P0077038 Gimap8 protein_coding protein_coding MGP_C3HHeJ_T0099533.1 MGP_C3HHeJ_G0037727.1 mouse_genomes_project 6 88647807 88647914 + Gm26501 snRNA snRNA MGP_C3HHeJ_T0079443.1 MGP_C3HHeJ_G0030907.1 mouse_genomes_project 6 120508860 121954626 - MGP_C3HHeJ_P0079443 Grid2 protein_coding protein_coding MGP_C3HHeJ_T0079444.1 MGP_C3HHeJ_G0030907.1 mouse_genomes_project 6 120895362 121953827 - Grid2 protein_coding retained_intron MGP_C3HHeJ_T0079445.1 MGP_C3HHeJ_G0030907.1 mouse_genomes_project 6 120996818 121954647 - Grid2 protein_coding processed_transcript MGP_C3HHeJ_T0079446.1 MGP_C3HHeJ_G0030907.1 mouse_genomes_project 6 121076282 121094193 - Grid2 protein_coding retained_intron MGP_C3HHeJ_T0079447.1 MGP_C3HHeJ_G0030907.1 mouse_genomes_project 6 121690762 121954458 - Grid2 protein_coding retained_intron MGP_C3HHeJ_T0079448.1 MGP_C3HHeJ_G0030907.1 mouse_genomes_project 6 121895260 121954777 - Grid2 protein_coding processed_transcript MGP_C3HHeJ_T0015083.1 MGP_C3HHeJ_G0013187.1 mouse_genomes_project 6 15877982 15879238 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004999.1 MGP_C3HHeJ_G0004258.1 mouse_genomes_project 6 119381029 119391713 + Gm16838 antisense antisense MGP_C3HHeJ_T0078585.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96149058 96177841 - MGP_C3HHeJ_P0078585 Copg1 protein_coding protein_coding MGP_C3HHeJ_T0078586.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96150123 96169658 - Copg1 protein_coding retained_intron MGP_C3HHeJ_T0078587.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96152599 96153882 - Copg1 protein_coding processed_transcript MGP_C3HHeJ_T0078588.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96158061 96170199 - Copg1 protein_coding retained_intron MGP_C3HHeJ_T0078589.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96160705 96167852 - Copg1 protein_coding retained_intron MGP_C3HHeJ_T0078590.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96161117 96171712 - Copg1 protein_coding retained_intron MGP_C3HHeJ_T0078591.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96169552 96170539 - Copg1 protein_coding retained_intron MGP_C3HHeJ_T0078592.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96170692 96177698 - Copg1 protein_coding retained_intron MGP_C3HHeJ_T0078593.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96171847 96177715 - Copg1 protein_coding processed_transcript MGP_C3HHeJ_T0078594.1 MGP_C3HHeJ_G0030729.1 mouse_genomes_project 6 96174895 96177727 - MGP_C3HHeJ_P0078594 Copg1 protein_coding protein_coding MGP_C3HHeJ_T0077299.1 MGP_C3HHeJ_G0030460.1 mouse_genomes_project 6 53570766 53623061 - MGP_C3HHeJ_P0077299 Nod1 protein_coding protein_coding MGP_C3HHeJ_T0077300.1 MGP_C3HHeJ_G0030460.1 mouse_genomes_project 6 53570766 53624012 - MGP_C3HHeJ_P0077300 Nod1 protein_coding protein_coding MGP_C3HHeJ_T0077301.1 MGP_C3HHeJ_G0030460.1 mouse_genomes_project 6 53571576 53574763 - Nod1 protein_coding processed_transcript MGP_C3HHeJ_T0077302.1 MGP_C3HHeJ_G0030460.1 mouse_genomes_project 6 53574753 53590107 - MGP_C3HHeJ_P0077302 Nod1 protein_coding protein_coding MGP_C3HHeJ_T0077303.1 MGP_C3HHeJ_G0030460.1 mouse_genomes_project 6 53584007 53586505 - Nod1 protein_coding processed_transcript MGP_C3HHeJ_T0077304.1 MGP_C3HHeJ_G0030460.1 mouse_genomes_project 6 53596125 53615354 - MGP_C3HHeJ_P0077304 Nod1 protein_coding protein_coding MGP_C3HHeJ_T0077462.1 MGP_C3HHeJ_G0030515.1 mouse_genomes_project 6 58268932 58350833 - MGP_C3HHeJ_P0077462 Gprin3 protein_coding protein_coding MGP_C3HHeJ_T0000150.1 MGP_C3HHeJ_G0000115.1 mouse_genomes_project 6 114761605 114762068 + MGP_C3HHeJ_P0000150 Igkv12-38 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000151.1 MGP_C3HHeJ_G0000115.1 mouse_genomes_project 6 114761605 114762068 + MGP_C3HHeJ_P0000151 Igkv12-38 IG_V_gene IG_V_gene MGP_C3HHeJ_T0076566.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32744932 32748502 - Cnot4 protein_coding retained_intron MGP_C3HHeJ_T0076567.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32744932 32862141 - MGP_C3HHeJ_P0076567 Cnot4 protein_coding protein_coding MGP_C3HHeJ_T0076568.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32744933 32862210 - MGP_C3HHeJ_P0076568 Cnot4 protein_coding protein_coding MGP_C3HHeJ_T0076569.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32744938 32862205 - MGP_C3HHeJ_P0076569 Cnot4 protein_coding protein_coding MGP_C3HHeJ_T0076570.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32768353 32862231 - MGP_C3HHeJ_P0076570 Cnot4 protein_coding protein_coding MGP_C3HHeJ_T0076571.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32769659 32811238 - MGP_C3HHeJ_P0076571 Cnot4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076572.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32776467 32780410 - Cnot4 protein_coding retained_intron MGP_C3HHeJ_T0076573.1 MGP_C3HHeJ_G0030264.1 mouse_genomes_project 6 32776897 32862203 - Cnot4 protein_coding processed_transcript MGP_C3HHeJ_T0015041.1 MGP_C3HHeJ_G0013145.1 mouse_genomes_project 6 14435 15800 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018043.1 MGP_C3HHeJ_G0015393.1 mouse_genomes_project 6 52860370 52869525 - Gm15527 processed_transcript retained_intron MGP_C3HHeJ_T0018044.1 MGP_C3HHeJ_G0015393.1 mouse_genomes_project 6 52862795 52893625 - Gm15527 processed_transcript antisense MGP_C3HHeJ_T0018045.1 MGP_C3HHeJ_G0015393.1 mouse_genomes_project 6 52862811 52893627 - Gm15527 processed_transcript antisense MGP_C3HHeJ_T0015356.1 MGP_C3HHeJ_G0013460.1 mouse_genomes_project 6 118358935 118359392 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002017.1 MGP_C3HHeJ_G0001938.1 mouse_genomes_project 6 92739574 92740168 + TEC TEC MGP_C3HHeJ_T0080108.1 MGP_C3HHeJ_G0031059.1 mouse_genomes_project 6 131922100 131935000 - MGP_C3HHeJ_P0080108 Klrc1 protein_coding protein_coding MGP_C3HHeJ_T0080109.1 MGP_C3HHeJ_G0031059.1 mouse_genomes_project 6 131930851 131934955 - MGP_C3HHeJ_P0080109 Klrc1 protein_coding protein_coding MGP_C3HHeJ_T0080110.1 MGP_C3HHeJ_G0031059.1 mouse_genomes_project 6 131930852 131935000 - MGP_C3HHeJ_P0080110 Klrc1 protein_coding protein_coding MGP_C3HHeJ_T0080111.1 MGP_C3HHeJ_G0031059.1 mouse_genomes_project 6 131930876 131934937 - MGP_C3HHeJ_P0080111 Klrc1 protein_coding protein_coding MGP_C3HHeJ_T0080724.1 MGP_C3HHeJ_G0031207.1 mouse_genomes_project 6 151660945 151883912 - MGP_C3HHeJ_P0080724 Tmtc1 protein_coding protein_coding MGP_C3HHeJ_T0080725.1 MGP_C3HHeJ_G0031207.1 mouse_genomes_project 6 151660945 151883912 - MGP_C3HHeJ_P0080725 Tmtc1 protein_coding protein_coding MGP_C3HHeJ_T0080726.1 MGP_C3HHeJ_G0031207.1 mouse_genomes_project 6 151676530 151881160 - MGP_C3HHeJ_P0080726 Tmtc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080727.1 MGP_C3HHeJ_G0031207.1 mouse_genomes_project 6 151844586 151881160 - MGP_C3HHeJ_P0080727 Tmtc1 protein_coding protein_coding MGP_C3HHeJ_T0015072.1 MGP_C3HHeJ_G0013176.1 mouse_genomes_project 6 10941646 10942000 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077393.1 MGP_C3HHeJ_G0030490.1 mouse_genomes_project 6 56121865 56122829 - MGP_C3HHeJ_P0077393 Vmn1r16 protein_coding protein_coding MGP_C3HHeJ_T0076998.1 MGP_C3HHeJ_G0030388.1 mouse_genomes_project 6 46834835 46892229 + MGP_C3HHeJ_P0076998 Sspo protein_coding protein_coding MGP_C3HHeJ_T0076999.1 MGP_C3HHeJ_G0030388.1 mouse_genomes_project 6 46834835 46892244 + MGP_C3HHeJ_P0076999 Sspo protein_coding protein_coding MGP_C3HHeJ_T0077000.1 MGP_C3HHeJ_G0030388.1 mouse_genomes_project 6 46870490 46877376 + Sspo protein_coding retained_intron MGP_C3HHeJ_T0077001.1 MGP_C3HHeJ_G0030388.1 mouse_genomes_project 6 46877944 46892244 + MGP_C3HHeJ_P0077001 Sspo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077002.1 MGP_C3HHeJ_G0030388.1 mouse_genomes_project 6 46884771 46887198 + MGP_C3HHeJ_P0077002 Sspo protein_coding protein_coding MGP_C3HHeJ_T0100745.1 MGP_C3HHeJ_G0038939.1 mouse_genomes_project 6 25077083 25077200 + Gm26310 snoRNA snoRNA MGP_C3HHeJ_T0080249.1 MGP_C3HHeJ_G0031118.1 mouse_genomes_project 6 138051029 138063031 - MGP_C3HHeJ_P0080249 Gprc5d protein_coding protein_coding MGP_C3HHeJ_T0080250.1 MGP_C3HHeJ_G0031118.1 mouse_genomes_project 6 138051029 138062994 - MGP_C3HHeJ_P0080250 Gprc5d protein_coding protein_coding MGP_C3HHeJ_T0080588.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580407 148585114 + MGP_C3HHeJ_P0080588 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0080589.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580429 148586262 + MGP_C3HHeJ_P0080589 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0080590.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580429 148585862 + MGP_C3HHeJ_P0080590 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0080591.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580443 148584291 + Lyrm5 protein_coding processed_transcript MGP_C3HHeJ_T0080592.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580448 148585862 + MGP_C3HHeJ_P0080592 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0080593.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580448 148585094 + MGP_C3HHeJ_P0080593 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0080594.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580459 148585862 + MGP_C3HHeJ_P0080594 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0080595.1 MGP_C3HHeJ_G0031182.1 mouse_genomes_project 6 148580473 148585057 + MGP_C3HHeJ_P0080595 Lyrm5 protein_coding protein_coding MGP_C3HHeJ_T0008675.1 MGP_C3HHeJ_G0007002.1 mouse_genomes_project 6 142737583 142740478 - Gm44272 lincRNA lincRNA MGP_C3HHeJ_T0077788.1 MGP_C3HHeJ_G0030572.1 mouse_genomes_project 6 67308809 67331682 + MGP_C3HHeJ_P0077788 Efcab12 protein_coding protein_coding MGP_C3HHeJ_T0077789.1 MGP_C3HHeJ_G0030572.1 mouse_genomes_project 6 67308809 67331516 + MGP_C3HHeJ_P0077789 Efcab12 protein_coding protein_coding MGP_C3HHeJ_T0077790.1 MGP_C3HHeJ_G0030572.1 mouse_genomes_project 6 67308809 67331516 + MGP_C3HHeJ_P0077790 Efcab12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015433.1 MGP_C3HHeJ_G0013537.1 mouse_genomes_project 6 133843383 133844120 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015094.1 MGP_C3HHeJ_G0013198.1 mouse_genomes_project 6 20013899 20015085 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080320.1 MGP_C3HHeJ_G0031137.1 mouse_genomes_project 6 139984919 140030284 + MGP_C3HHeJ_P0080320 Pde6h protein_coding protein_coding MGP_C3HHeJ_T0080324.1 MGP_C3HHeJ_G0031137.1 mouse_genomes_project 6 140021619 140035640 + MGP_C3HHeJ_P0080324 Pde6h protein_coding protein_coding MGP_C3HHeJ_T0080325.1 MGP_C3HHeJ_G0031137.1 mouse_genomes_project 6 140021629 140030529 + Pde6h protein_coding retained_intron MGP_C3HHeJ_T0080326.1 MGP_C3HHeJ_G0031137.1 mouse_genomes_project 6 140026336 140030315 + MGP_C3HHeJ_P0080326 Pde6h protein_coding protein_coding MGP_C3HHeJ_T0079046.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206043 101209331 - MGP_C3HHeJ_P0079046 Aup1 protein_coding protein_coding MGP_C3HHeJ_T0079047.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206165 101209206 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079048.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206169 101206999 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079049.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206169 101209104 - MGP_C3HHeJ_P0079049 Aup1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079050.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206173 101209121 - MGP_C3HHeJ_P0079050 Aup1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079051.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206175 101206631 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079052.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206207 101207442 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079053.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101206458 101207004 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079054.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207014 101207340 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079055.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207417 101209116 - MGP_C3HHeJ_P0079055 Aup1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079056.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207466 101209138 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079057.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207496 101209123 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079058.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207538 101208138 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079059.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207563 101209097 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079060.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101207734 101208461 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079061.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101208336 101209114 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0079063.1 MGP_C3HHeJ_G0030819.1 mouse_genomes_project 6 101208682 101209121 - Aup1 protein_coding retained_intron MGP_C3HHeJ_T0002090.1 MGP_C3HHeJ_G0002011.1 mouse_genomes_project 6 112987100 112990358 + TEC TEC MGP_C3HHeJ_T0076763.1 MGP_C3HHeJ_G0030307.1 mouse_genomes_project 6 38466600 38471285 - MGP_C3HHeJ_P0076763 Prss37 protein_coding protein_coding MGP_C3HHeJ_T0076764.1 MGP_C3HHeJ_G0030307.1 mouse_genomes_project 6 38470945 38471260 - Prss37 protein_coding processed_transcript MGP_C3HHeJ_T0098532.1 MGP_C3HHeJ_G0036733.1 mouse_genomes_project 6 131686899 131687493 + Gm43914 sense_intronic sense_intronic MGP_C3HHeJ_T0078767.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98184799 98192635 + Dusp11 protein_coding processed_transcript MGP_C3HHeJ_T0078768.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98184799 98205727 + MGP_C3HHeJ_P0078768 Dusp11 protein_coding protein_coding MGP_C3HHeJ_T0078769.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98184824 98186146 + Dusp11 protein_coding retained_intron MGP_C3HHeJ_T0078770.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98184859 98192533 + Dusp11 protein_coding processed_transcript MGP_C3HHeJ_T0078771.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98188307 98200247 + MGP_C3HHeJ_P0078771 Dusp11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078772.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98193654 98197882 + Dusp11 protein_coding processed_transcript MGP_C3HHeJ_T0078773.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98193770 98197559 + Dusp11 protein_coding retained_intron MGP_C3HHeJ_T0078774.1 MGP_C3HHeJ_G0030763.1 mouse_genomes_project 6 98196713 98197887 + Dusp11 protein_coding retained_intron MGP_C3HHeJ_T0011544.1 MGP_C3HHeJ_G0009677.1 mouse_genomes_project 6 46117215 46117327 - Rny1 misc_RNA misc_RNA MGP_C3HHeJ_T0099517.1 MGP_C3HHeJ_G0037711.1 mouse_genomes_project 6 46646010 46646210 + Gm22122 snRNA snRNA MGP_C3HHeJ_T0079558.1 MGP_C3HHeJ_G0030928.1 mouse_genomes_project 6 124262239 124267011 + MGP_C3HHeJ_P0079558 Dppa3 protein_coding protein_coding MGP_C3HHeJ_T0015399.1 MGP_C3HHeJ_G0013503.1 mouse_genomes_project 6 125137979 125138739 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015313.1 MGP_C3HHeJ_G0013417.1 mouse_genomes_project 6 109015235 109016204 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015057.1 MGP_C3HHeJ_G0013161.1 mouse_genomes_project 6 4641145 4641533 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078240.1 MGP_C3HHeJ_G0030655.1 mouse_genomes_project 6 86547754 86574503 + MGP_C3HHeJ_P0078240 Tmf1 protein_coding protein_coding MGP_C3HHeJ_T0078241.1 MGP_C3HHeJ_G0030655.1 mouse_genomes_project 6 86547839 86571340 + MGP_C3HHeJ_P0078241 Tmf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078242.1 MGP_C3HHeJ_G0030655.1 mouse_genomes_project 6 86558098 86566333 + Tmf1 protein_coding processed_transcript MGP_C3HHeJ_T0076244.1 MGP_C3HHeJ_G0030213.1 mouse_genomes_project 6 26764912 26767611 + MGP_C3HHeJ_P0076244 Hilpda protein_coding protein_coding MGP_C3HHeJ_T0076245.1 MGP_C3HHeJ_G0030213.1 mouse_genomes_project 6 26765050 26767871 + MGP_C3HHeJ_P0076245 Hilpda protein_coding protein_coding MGP_C3HHeJ_T0001947.1 MGP_C3HHeJ_G0001869.1 mouse_genomes_project 6 49421247 49422213 + TEC TEC MGP_C3HHeJ_T0076784.1 MGP_C3HHeJ_G0030319.1 mouse_genomes_project 6 39009149 39014391 - MGP_C3HHeJ_P0076784 2210010C04Rik protein_coding protein_coding MGP_C3HHeJ_T0010678.1 MGP_C3HHeJ_G0008811.1 mouse_genomes_project 6 46374006 46374099 + Gm24563 miRNA miRNA MGP_C3HHeJ_T0102105.1 MGP_C3HHeJ_G0040070.1 mouse_genomes_project 6 94195026 94196011 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015100.1 MGP_C3HHeJ_G0013204.1 mouse_genomes_project 6 21914114 21914823 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000139.1 MGP_C3HHeJ_G0000107.1 mouse_genomes_project 6 114551138 114551443 + MGP_C3HHeJ_P0000139 Igkv8-27 IG_V_gene IG_V_gene MGP_C3HHeJ_T0008548.1 MGP_C3HHeJ_G0006903.1 mouse_genomes_project 6 65593448 65598265 - Gm43983 lincRNA lincRNA MGP_C3HHeJ_T0079936.1 MGP_C3HHeJ_G0031014.1 mouse_genomes_project 6 129127272 129149550 - MGP_C3HHeJ_P0079936 Tigar protein_coding protein_coding MGP_C3HHeJ_T0079937.1 MGP_C3HHeJ_G0031014.1 mouse_genomes_project 6 129131868 129149557 - MGP_C3HHeJ_P0079937 Tigar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0004950.1 MGP_C3HHeJ_G0004230.1 mouse_genomes_project 6 96341780 96342965 + Gm44210 antisense antisense MGP_C3HHeJ_T0075766.1 MGP_C3HHeJ_G0030116.1 mouse_genomes_project 6 176700 214092 - MGP_C3HHeJ_P0075766 Hepacam2 protein_coding protein_coding MGP_C3HHeJ_T0075767.1 MGP_C3HHeJ_G0030116.1 mouse_genomes_project 6 176999 206883 - Hepacam2 protein_coding retained_intron MGP_C3HHeJ_T0075768.1 MGP_C3HHeJ_G0030116.1 mouse_genomes_project 6 195545 206897 - MGP_C3HHeJ_P0075768 Hepacam2 protein_coding protein_coding MGP_C3HHeJ_T0075769.1 MGP_C3HHeJ_G0030116.1 mouse_genomes_project 6 202787 217792 - MGP_C3HHeJ_P0075769 Hepacam2 protein_coding protein_coding MGP_C3HHeJ_T0075770.1 MGP_C3HHeJ_G0030116.1 mouse_genomes_project 6 203074 206864 - Hepacam2 protein_coding retained_intron MGP_C3HHeJ_T0101465.1 MGP_C3HHeJ_G0039472.1 mouse_genomes_project 6 136384866 136388436 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101466.1 MGP_C3HHeJ_G0039472.1 mouse_genomes_project 6 136384899 136387170 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0077198.1 MGP_C3HHeJ_G0030439.1 mouse_genomes_project 6 50757684 50760041 - MGP_C3HHeJ_P0077198 Hoxa6 protein_coding protein_coding MGP_C3HHeJ_T0018078.1 MGP_C3HHeJ_G0015405.1 mouse_genomes_project 6 121953027 121958052 + 9330118I20Rik processed_transcript retained_intron MGP_C3HHeJ_T0018079.1 MGP_C3HHeJ_G0015405.1 mouse_genomes_project 6 121955815 121964304 + 9330118I20Rik processed_transcript lincRNA MGP_C3HHeJ_T0008652.1 MGP_C3HHeJ_G0006989.1 mouse_genomes_project 6 131062706 131063320 - Gm44066 lincRNA lincRNA MGP_C3HHeJ_T0080474.1 MGP_C3HHeJ_G0031164.1 mouse_genomes_project 6 145551513 145557052 + MGP_C3HHeJ_P0080474 Iapp protein_coding protein_coding MGP_C3HHeJ_T0080475.1 MGP_C3HHeJ_G0031164.1 mouse_genomes_project 6 145551537 145552157 + Iapp protein_coding processed_transcript MGP_C3HHeJ_T0008492.1 MGP_C3HHeJ_G0006859.1 mouse_genomes_project 6 39033328 39040552 + 5830405F06Rik lincRNA lincRNA MGP_C3HHeJ_T0008493.1 MGP_C3HHeJ_G0006859.1 mouse_genomes_project 6 39033329 39038594 + 5830405F06Rik lincRNA lincRNA MGP_C3HHeJ_T0100765.1 MGP_C3HHeJ_G0038959.1 mouse_genomes_project 6 66346568 66346692 + Gm22882 snoRNA snoRNA MGP_C3HHeJ_T0005035.1 MGP_C3HHeJ_G0004290.1 mouse_genomes_project 6 138843779 138854762 + Gm14330 antisense antisense MGP_C3HHeJ_T0015111.1 MGP_C3HHeJ_G0013215.1 mouse_genomes_project 6 30915336 30916108 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004850.1 MGP_C3HHeJ_G0004158.1 mouse_genomes_project 6 29950977 29964695 + Plxna4os3 antisense antisense MGP_C3HHeJ_T0004851.1 MGP_C3HHeJ_G0004158.1 mouse_genomes_project 6 29951061 29964687 + Plxna4os3 antisense antisense MGP_C3HHeJ_T0100776.1 MGP_C3HHeJ_G0038970.1 mouse_genomes_project 6 90497451 90497582 + Gm25094 snoRNA snoRNA MGP_C3HHeJ_T0077471.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60229932 61486783 + MGP_C3HHeJ_P0077471 Ccser1 protein_coding protein_coding MGP_C3HHeJ_T0077472.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60230145 60375035 + Ccser1 protein_coding retained_intron MGP_C3HHeJ_T0077473.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60230146 60374666 + Ccser1 protein_coding retained_intron MGP_C3HHeJ_T0077474.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60372912 61484185 + MGP_C3HHeJ_P0077474 Ccser1 protein_coding protein_coding MGP_C3HHeJ_T0077475.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60375858 60639591 + Ccser1 protein_coding retained_intron MGP_C3HHeJ_T0077476.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60382098 60639353 + Ccser1 protein_coding processed_transcript MGP_C3HHeJ_T0077477.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60437247 60892820 + MGP_C3HHeJ_P0077477 Ccser1 protein_coding protein_coding MGP_C3HHeJ_T0077478.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60437255 60790846 + Ccser1 protein_coding retained_intron MGP_C3HHeJ_T0077479.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60437290 60531538 + Ccser1 protein_coding processed_transcript MGP_C3HHeJ_T0077480.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60639254 60901684 + MGP_C3HHeJ_P0077480 Ccser1 protein_coding protein_coding MGP_C3HHeJ_T0077481.1 MGP_C3HHeJ_G0030519.1 mouse_genomes_project 6 60863532 60901223 + Ccser1 protein_coding processed_transcript MGP_C3HHeJ_T0076665.1 MGP_C3HHeJ_G0030285.1 mouse_genomes_project 6 36477025 36496965 - MGP_C3HHeJ_P0076665 Klrg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076666.1 MGP_C3HHeJ_G0030285.1 mouse_genomes_project 6 36477992 36496965 - MGP_C3HHeJ_P0076666 Klrg2 protein_coding protein_coding MGP_C3HHeJ_T0076667.1 MGP_C3HHeJ_G0030285.1 mouse_genomes_project 6 36478593 36496974 - MGP_C3HHeJ_P0076667 Klrg2 protein_coding protein_coding MGP_C3HHeJ_T0002028.1 MGP_C3HHeJ_G0001949.1 mouse_genomes_project 6 95823503 95823761 + TEC TEC MGP_C3HHeJ_T0076772.1 MGP_C3HHeJ_G0030312.1 mouse_genomes_project 6 38565876 38597529 + MGP_C3HHeJ_P0076772 protein_coding protein_coding MGP_C3HHeJ_T0076773.1 MGP_C3HHeJ_G0030312.1 mouse_genomes_project 6 38581538 38727872 + MGP_C3HHeJ_P0076773 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076774.1 MGP_C3HHeJ_G0030312.1 mouse_genomes_project 6 38708191 38728702 + protein_coding processed_transcript MGP_C3HHeJ_T0076775.1 MGP_C3HHeJ_G0030312.1 mouse_genomes_project 6 38708766 38709986 + protein_coding processed_transcript MGP_C3HHeJ_T0078446.1 MGP_C3HHeJ_G0030702.1 mouse_genomes_project 6 93889287 93895668 + MGP_C3HHeJ_P0078446 Vmn1r49 protein_coding protein_coding MGP_C3HHeJ_T0078447.1 MGP_C3HHeJ_G0030702.1 mouse_genomes_project 6 93894735 93895668 + MGP_C3HHeJ_P0078447 Vmn1r49 protein_coding protein_coding MGP_C3HHeJ_T0010727.1 MGP_C3HHeJ_G0008860.1 mouse_genomes_project 6 130180179 130180289 - Gm26338 miRNA miRNA MGP_C3HHeJ_T0015110.1 MGP_C3HHeJ_G0013214.1 mouse_genomes_project 6 30263340 30263575 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077754.1 MGP_C3HHeJ_G0030567.1 mouse_genomes_project 6 67153682 67193878 + MGP_C3HHeJ_P0077754 Plxnd1 protein_coding protein_coding MGP_C3HHeJ_T0077755.1 MGP_C3HHeJ_G0030567.1 mouse_genomes_project 6 67179246 67181705 + MGP_C3HHeJ_P0077755 Plxnd1 protein_coding protein_coding MGP_C3HHeJ_T0077756.1 MGP_C3HHeJ_G0030567.1 mouse_genomes_project 6 67188653 67190119 + Plxnd1 protein_coding retained_intron MGP_C3HHeJ_T0077757.1 MGP_C3HHeJ_G0030567.1 mouse_genomes_project 6 67191844 67193049 + Plxnd1 protein_coding retained_intron MGP_C3HHeJ_T0077758.1 MGP_C3HHeJ_G0030567.1 mouse_genomes_project 6 67192318 67192883 + Plxnd1 protein_coding retained_intron MGP_C3HHeJ_T0011571.1 MGP_C3HHeJ_G0009704.1 mouse_genomes_project 6 100539188 100539375 - Gm27772 misc_RNA misc_RNA MGP_C3HHeJ_T0008578.1 MGP_C3HHeJ_G0006928.1 mouse_genomes_project 6 92294946 92301229 - Gm45218 lincRNA lincRNA MGP_C3HHeJ_T0001875.1 MGP_C3HHeJ_G0001797.1 mouse_genomes_project 6 1526395 1528234 + TEC TEC MGP_C3HHeJ_T0077170.1 MGP_C3HHeJ_G0030430.1 mouse_genomes_project 6 49995147 49999713 + protein_coding retained_intron MGP_C3HHeJ_T0077171.1 MGP_C3HHeJ_G0030430.1 mouse_genomes_project 6 49995161 49996545 + protein_coding retained_intron MGP_C3HHeJ_T0077172.1 MGP_C3HHeJ_G0030430.1 mouse_genomes_project 6 49995230 50004203 + MGP_C3HHeJ_P0077172 protein_coding protein_coding MGP_C3HHeJ_T0077173.1 MGP_C3HHeJ_G0030430.1 mouse_genomes_project 6 50003064 50005990 + protein_coding retained_intron MGP_C3HHeJ_T0076234.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26686212 26702998 - MGP_C3HHeJ_P0076234 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076235.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26686215 26698916 - MGP_C3HHeJ_P0076235 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076236.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26686215 26698964 - MGP_C3HHeJ_P0076236 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076237.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26686215 26703031 - MGP_C3HHeJ_P0076237 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076238.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26686216 26703009 - MGP_C3HHeJ_P0076238 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076239.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26686223 26689197 - MGP_C3HHeJ_P0076239 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076240.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26690338 26692219 - Impdh1 protein_coding retained_intron MGP_C3HHeJ_T0076241.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26690883 26702944 - MGP_C3HHeJ_P0076241 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0076242.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26692611 26695395 - Impdh1 protein_coding retained_intron MGP_C3HHeJ_T0076243.1 MGP_C3HHeJ_G0030212.1 mouse_genomes_project 6 26692777 26702596 - MGP_C3HHeJ_P0076243 Impdh1 protein_coding protein_coding MGP_C3HHeJ_T0005557.1 MGP_C3HHeJ_G0004671.1 mouse_genomes_project 6 68036269 68044842 + Gm17733 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0002009.1 MGP_C3HHeJ_G0001930.1 mouse_genomes_project 6 91936222 91937467 + TEC TEC MGP_C3HHeJ_T0075809.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426193 1499694 - MGP_C3HHeJ_P0075809 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075810.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426193 1499722 - MGP_C3HHeJ_P0075810 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075811.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426197 1499725 - MGP_C3HHeJ_P0075811 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075812.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426197 1499675 - MGP_C3HHeJ_P0075812 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075813.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426227 1499634 - MGP_C3HHeJ_P0075813 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075814.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426261 1499642 - MGP_C3HHeJ_P0075814 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075815.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1426261 1499706 - MGP_C3HHeJ_P0075815 Sgce protein_coding protein_coding MGP_C3HHeJ_T0075816.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1429552 1499675 - Sgce protein_coding retained_intron MGP_C3HHeJ_T0075817.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1440429 1499598 - Sgce protein_coding retained_intron MGP_C3HHeJ_T0075818.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1443245 1499588 - Sgce protein_coding processed_transcript MGP_C3HHeJ_T0075819.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1443417 1499581 - MGP_C3HHeJ_P0075819 Sgce protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075820.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1459389 1463805 - Sgce protein_coding retained_intron MGP_C3HHeJ_T0075821.1 MGP_C3HHeJ_G0030125.1 mouse_genomes_project 6 1489660 1492726 - Sgce protein_coding retained_intron MGP_C3HHeJ_T0078805.1 MGP_C3HHeJ_G0030775.1 mouse_genomes_project 6 98656276 98694133 + MGP_C3HHeJ_P0078805 Fbxo41 protein_coding protein_coding MGP_C3HHeJ_T0078806.1 MGP_C3HHeJ_G0030775.1 mouse_genomes_project 6 98656384 98694129 + MGP_C3HHeJ_P0078806 Fbxo41 protein_coding protein_coding MGP_C3HHeJ_T0078807.1 MGP_C3HHeJ_G0030775.1 mouse_genomes_project 6 98656412 98694127 + MGP_C3HHeJ_P0078807 Fbxo41 protein_coding protein_coding MGP_C3HHeJ_T0000291.1 MGP_C3HHeJ_G0000241.1 mouse_genomes_project 6 116587380 116587847 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0078791.1 MGP_C3HHeJ_G0030767.1 mouse_genomes_project 6 98274950 98278236 + MGP_C3HHeJ_P0078791 Nat8f2 protein_coding protein_coding MGP_C3HHeJ_T0078266.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89058561 89154388 + MGP_C3HHeJ_P0078266 Lrig1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078267.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89058574 89154383 + MGP_C3HHeJ_P0078267 Lrig1 protein_coding protein_coding MGP_C3HHeJ_T0078268.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89058582 89154381 + MGP_C3HHeJ_P0078268 Lrig1 protein_coding protein_coding MGP_C3HHeJ_T0078269.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89078082 89134451 + Lrig1 protein_coding processed_transcript MGP_C3HHeJ_T0078270.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89079868 89131375 + Lrig1 protein_coding processed_transcript MGP_C3HHeJ_T0078271.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89103929 89133004 + Lrig1 protein_coding processed_transcript MGP_C3HHeJ_T0078272.1 MGP_C3HHeJ_G0030663.1 mouse_genomes_project 6 89153523 89154237 + Lrig1 protein_coding processed_transcript MGP_C3HHeJ_T0078119.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76653731 76667040 - MGP_C3HHeJ_P0078119 Trnt1 protein_coding protein_coding MGP_C3HHeJ_T0078120.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76654334 76667065 - MGP_C3HHeJ_P0078120 Trnt1 protein_coding protein_coding MGP_C3HHeJ_T0078121.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76654551 76667040 - MGP_C3HHeJ_P0078121 Trnt1 protein_coding protein_coding MGP_C3HHeJ_T0078122.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76658524 76667086 - MGP_C3HHeJ_P0078122 Trnt1 protein_coding protein_coding MGP_C3HHeJ_T0078123.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76661740 76666699 - MGP_C3HHeJ_P0078123 Trnt1 protein_coding protein_coding MGP_C3HHeJ_T0078124.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76662854 76666920 - MGP_C3HHeJ_P0078124 Trnt1 protein_coding protein_coding MGP_C3HHeJ_T0078125.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76663150 76666993 - Trnt1 protein_coding processed_transcript MGP_C3HHeJ_T0078126.1 MGP_C3HHeJ_G0030633.1 mouse_genomes_project 6 76666041 76667036 - Trnt1 protein_coding retained_intron MGP_C3HHeJ_T0005026.1 MGP_C3HHeJ_G0004281.1 mouse_genomes_project 6 131190529 131206947 - antisense antisense MGP_C3HHeJ_T0080415.1 MGP_C3HHeJ_G0031151.1 mouse_genomes_project 6 143217731 143218638 + Capza3 protein_coding processed_transcript MGP_C3HHeJ_T0080416.1 MGP_C3HHeJ_G0031151.1 mouse_genomes_project 6 143218036 143219258 + MGP_C3HHeJ_P0080416 Capza3 protein_coding protein_coding MGP_C3HHeJ_T0002675.1 MGP_C3HHeJ_G0002557.1 mouse_genomes_project 6 39242231 39242508 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0002630.1 MGP_C3HHeJ_G0002520.1 mouse_genomes_project 6 39272180 39272795 + MGP_C3HHeJ_P0002630 Trbv30 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002631.1 MGP_C3HHeJ_G0002520.1 mouse_genomes_project 6 39272180 39272795 + MGP_C3HHeJ_P0002631 Trbv30 TR_V_gene TR_V_gene MGP_C3HHeJ_T0076751.1 MGP_C3HHeJ_G0030303.1 mouse_genomes_project 6 38388573 38405073 + MGP_C3HHeJ_P0076751 Wee2 protein_coding protein_coding MGP_C3HHeJ_T0076752.1 MGP_C3HHeJ_G0030303.1 mouse_genomes_project 6 38392592 38417587 + MGP_C3HHeJ_P0076752 Wee2 protein_coding protein_coding MGP_C3HHeJ_T0076753.1 MGP_C3HHeJ_G0030303.1 mouse_genomes_project 6 38392666 38393884 + MGP_C3HHeJ_P0076753 Wee2 protein_coding protein_coding MGP_C3HHeJ_T0076107.1 MGP_C3HHeJ_G0030179.1 mouse_genomes_project 6 19523106 19528459 + MGP_C3HHeJ_P0076107 Wnt16 protein_coding protein_coding MGP_C3HHeJ_T0076108.1 MGP_C3HHeJ_G0030179.1 mouse_genomes_project 6 19523109 19533404 + MGP_C3HHeJ_P0076108 Wnt16 protein_coding protein_coding MGP_C3HHeJ_T0076109.1 MGP_C3HHeJ_G0030179.1 mouse_genomes_project 6 19523167 19529465 + MGP_C3HHeJ_P0076109 Wnt16 protein_coding protein_coding MGP_C3HHeJ_T0076110.1 MGP_C3HHeJ_G0030179.1 mouse_genomes_project 6 19523740 19532709 + MGP_C3HHeJ_P0076110 Wnt16 protein_coding protein_coding MGP_C3HHeJ_T0015265.1 MGP_C3HHeJ_G0013369.1 mouse_genomes_project 6 88934848 88935838 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010680.1 MGP_C3HHeJ_G0008813.1 mouse_genomes_project 6 49061994 49062105 + Mir6371 miRNA miRNA MGP_C3HHeJ_T0102137.1 MGP_C3HHeJ_G0040101.1 mouse_genomes_project 6 135710689 135711622 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0076825.1 MGP_C3HHeJ_G0030340.1 mouse_genomes_project 6 40287658 40290244 + MGP_C3HHeJ_P0076825 Tmem139 protein_coding protein_coding MGP_C3HHeJ_T0080255.1 MGP_C3HHeJ_G0031120.1 mouse_genomes_project 6 138147799 138186623 + MGP_C3HHeJ_P0080255 Fam234b protein_coding protein_coding MGP_C3HHeJ_T0080256.1 MGP_C3HHeJ_G0031120.1 mouse_genomes_project 6 138147799 138195325 + MGP_C3HHeJ_P0080256 Fam234b protein_coding protein_coding MGP_C3HHeJ_T0080257.1 MGP_C3HHeJ_G0031120.1 mouse_genomes_project 6 138147931 138159982 + MGP_C3HHeJ_P0080257 Fam234b protein_coding protein_coding MGP_C3HHeJ_T0080258.1 MGP_C3HHeJ_G0031120.1 mouse_genomes_project 6 138148234 138160011 + MGP_C3HHeJ_P0080258 Fam234b protein_coding protein_coding MGP_C3HHeJ_T0080259.1 MGP_C3HHeJ_G0031120.1 mouse_genomes_project 6 138180661 138186619 + Fam234b protein_coding retained_intron MGP_C3HHeJ_T0008540.1 MGP_C3HHeJ_G0006897.1 mouse_genomes_project 6 64797562 64799910 - Gm30557 lincRNA lincRNA MGP_C3HHeJ_T0001872.1 MGP_C3HHeJ_G0001794.1 mouse_genomes_project 6 1250802 1252594 + TEC TEC MGP_C3HHeJ_T0100774.1 MGP_C3HHeJ_G0038968.1 mouse_genomes_project 6 89916219 89916355 - Gm22840 snoRNA snoRNA MGP_C3HHeJ_T0002047.1 MGP_C3HHeJ_G0001968.1 mouse_genomes_project 6 97618382 97620120 - TEC TEC MGP_C3HHeJ_T0015386.1 MGP_C3HHeJ_G0013490.1 mouse_genomes_project 6 123038751 123039501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001973.1 MGP_C3HHeJ_G0001894.1 mouse_genomes_project 6 69490831 69491526 - TEC TEC MGP_C3HHeJ_T0102099.1 MGP_C3HHeJ_G0040064.1 mouse_genomes_project 6 62055144 62055475 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079694.1 MGP_C3HHeJ_G0030968.1 mouse_genomes_project 6 126670595 126680929 - MGP_C3HHeJ_P0079694 Lrrc23 protein_coding protein_coding MGP_C3HHeJ_T0079695.1 MGP_C3HHeJ_G0030968.1 mouse_genomes_project 6 126670601 126680938 - MGP_C3HHeJ_P0079695 Lrrc23 protein_coding protein_coding MGP_C3HHeJ_T0079696.1 MGP_C3HHeJ_G0030968.1 mouse_genomes_project 6 126671337 126675818 - Lrrc23 protein_coding retained_intron MGP_C3HHeJ_T0079697.1 MGP_C3HHeJ_G0030968.1 mouse_genomes_project 6 126679472 126680928 - MGP_C3HHeJ_P0079697 Lrrc23 protein_coding protein_coding MGP_C3HHeJ_T0079698.1 MGP_C3HHeJ_G0030968.1 mouse_genomes_project 6 126680111 126680915 - MGP_C3HHeJ_P0079698 Lrrc23 protein_coding protein_coding MGP_C3HHeJ_T0002676.1 MGP_C3HHeJ_G0002558.1 mouse_genomes_project 6 39256451 39256715 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0010716.1 MGP_C3HHeJ_G0008849.1 mouse_genomes_project 6 113287381 113287512 - Mir8112 miRNA miRNA MGP_C3HHeJ_T0011741.1 MGP_C3HHeJ_G0009848.1 mouse_genomes_project 6 40837689 40838625 + MGP_C3HHeJ_P0011741 Olfr451-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0077368.1 MGP_C3HHeJ_G0030476.1 mouse_genomes_project 6 55550943 55598539 + MGP_C3HHeJ_P0077368 Fkbp9 protein_coding protein_coding MGP_C3HHeJ_T0077369.1 MGP_C3HHeJ_G0030476.1 mouse_genomes_project 6 55568562 55569890 + Fkbp9 protein_coding retained_intron MGP_C3HHeJ_T0080468.1 MGP_C3HHeJ_G0031163.1 mouse_genomes_project 6 145485419 145530734 - MGP_C3HHeJ_P0080468 Slco1a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080469.1 MGP_C3HHeJ_G0031163.1 mouse_genomes_project 6 145485419 145575998 - MGP_C3HHeJ_P0080469 Slco1a5 protein_coding protein_coding MGP_C3HHeJ_T0080470.1 MGP_C3HHeJ_G0031163.1 mouse_genomes_project 6 145485419 145533998 - MGP_C3HHeJ_P0080470 Slco1a5 protein_coding protein_coding MGP_C3HHeJ_T0080471.1 MGP_C3HHeJ_G0031163.1 mouse_genomes_project 6 145485854 145530684 - MGP_C3HHeJ_P0080471 Slco1a5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080472.1 MGP_C3HHeJ_G0031163.1 mouse_genomes_project 6 145499211 145533998 - Slco1a5 protein_coding retained_intron MGP_C3HHeJ_T0080473.1 MGP_C3HHeJ_G0031163.1 mouse_genomes_project 6 145509525 145575965 - MGP_C3HHeJ_P0080473 Slco1a5 protein_coding protein_coding MGP_C3HHeJ_T0002043.1 MGP_C3HHeJ_G0001964.1 mouse_genomes_project 6 97220989 97222680 - TEC TEC MGP_C3HHeJ_T0001900.1 MGP_C3HHeJ_G0001822.1 mouse_genomes_project 6 25641963 25648967 - TEC TEC MGP_C3HHeJ_T0099524.1 MGP_C3HHeJ_G0037718.1 mouse_genomes_project 6 70206588 70206680 + Gm23244 snRNA snRNA MGP_C3HHeJ_T0008646.1 MGP_C3HHeJ_G0006983.1 mouse_genomes_project 6 129343167 129354571 - Gm38404 lincRNA lincRNA MGP_C3HHeJ_T0080707.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151606095 151640891 - MGP_C3HHeJ_P0080707 Ergic2 protein_coding protein_coding MGP_C3HHeJ_T0080708.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151608232 151640624 - MGP_C3HHeJ_P0080708 Ergic2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080709.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151608326 151616256 - MGP_C3HHeJ_P0080709 Ergic2 protein_coding protein_coding MGP_C3HHeJ_T0080710.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151608381 151610225 - MGP_C3HHeJ_P0080710 Ergic2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080711.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151608661 151623408 - MGP_C3HHeJ_P0080711 Ergic2 protein_coding protein_coding MGP_C3HHeJ_T0080712.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151608944 151624393 - Ergic2 protein_coding retained_intron MGP_C3HHeJ_T0080713.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151610062 151617870 - Ergic2 protein_coding retained_intron MGP_C3HHeJ_T0080714.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151610714 151640891 - Ergic2 protein_coding processed_transcript MGP_C3HHeJ_T0080715.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151616200 151624678 - Ergic2 protein_coding retained_intron MGP_C3HHeJ_T0080716.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151617663 151623391 - Ergic2 protein_coding processed_transcript MGP_C3HHeJ_T0080717.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151617709 151640539 - MGP_C3HHeJ_P0080717 Ergic2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080718.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151619082 151624495 - Ergic2 protein_coding processed_transcript MGP_C3HHeJ_T0080719.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151623345 151631303 - Ergic2 protein_coding retained_intron MGP_C3HHeJ_T0080720.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151627469 151640494 - Ergic2 protein_coding retained_intron MGP_C3HHeJ_T0080721.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151630005 151640539 - MGP_C3HHeJ_P0080721 Ergic2 protein_coding protein_coding MGP_C3HHeJ_T0080722.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151630760 151640538 - Ergic2 protein_coding retained_intron MGP_C3HHeJ_T0080723.1 MGP_C3HHeJ_G0031206.1 mouse_genomes_project 6 151631213 151640522 - Ergic2 protein_coding processed_transcript MGP_C3HHeJ_T0000192.1 MGP_C3HHeJ_G0000146.1 mouse_genomes_project 6 117005563 117006050 + MGP_C3HHeJ_P0000192 Igkv9-123 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000183.1 MGP_C3HHeJ_G0000138.1 mouse_genomes_project 6 116445416 116445910 - MGP_C3HHeJ_P0000183 Igkv20-101-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002114.1 MGP_C3HHeJ_G0002035.1 mouse_genomes_project 6 131809297 131809988 + TEC TEC MGP_C3HHeJ_T0004846.1 MGP_C3HHeJ_G0004154.1 mouse_genomes_project 6 27009612 27011586 + Gm26627 antisense antisense MGP_C3HHeJ_T0079601.1 MGP_C3HHeJ_G0030944.1 mouse_genomes_project 6 125057030 125084898 - MGP_C3HHeJ_P0079601 protein_coding protein_coding MGP_C3HHeJ_T0015474.1 MGP_C3HHeJ_G0013578.1 mouse_genomes_project 6 151690967 151691370 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015302.1 MGP_C3HHeJ_G0013406.1 mouse_genomes_project 6 102440278 102440969 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015048.1 MGP_C3HHeJ_G0013152.1 mouse_genomes_project 6 1589498 1589670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077105.1 MGP_C3HHeJ_G0030416.1 mouse_genomes_project 6 47673853 47698474 - MGP_C3HHeJ_P0077105 Tra2a protein_coding protein_coding MGP_C3HHeJ_T0077106.1 MGP_C3HHeJ_G0030416.1 mouse_genomes_project 6 47673853 47698475 - MGP_C3HHeJ_P0077106 Tra2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077107.1 MGP_C3HHeJ_G0030416.1 mouse_genomes_project 6 47673857 47698497 - Tra2a protein_coding retained_intron MGP_C3HHeJ_T0077108.1 MGP_C3HHeJ_G0030416.1 mouse_genomes_project 6 47673857 47698494 - MGP_C3HHeJ_P0077108 Tra2a protein_coding protein_coding MGP_C3HHeJ_T0077109.1 MGP_C3HHeJ_G0030416.1 mouse_genomes_project 6 47694743 47698494 - Tra2a protein_coding retained_intron MGP_C3HHeJ_T0079513.1 MGP_C3HHeJ_G0030921.1 mouse_genomes_project 6 123929066 123937303 + MGP_C3HHeJ_P0079513 M6pr protein_coding unknown_likely_coding MGP_C3HHeJ_T0079514.1 MGP_C3HHeJ_G0030921.1 mouse_genomes_project 6 123929115 123936618 + M6pr protein_coding retained_intron MGP_C3HHeJ_T0008680.1 MGP_C3HHeJ_G0007006.1 mouse_genomes_project 6 146258102 146258489 + 4930434O05Rik lincRNA lincRNA MGP_C3HHeJ_T0076959.1 MGP_C3HHeJ_G0030381.1 mouse_genomes_project 6 46203093 46232184 + MGP_C3HHeJ_P0076959 Zfp282 protein_coding protein_coding MGP_C3HHeJ_T0076960.1 MGP_C3HHeJ_G0030381.1 mouse_genomes_project 6 46203545 46218766 + Zfp282 protein_coding retained_intron MGP_C3HHeJ_T0080076.1 MGP_C3HHeJ_G0031050.1 mouse_genomes_project 6 131697573 131720425 - MGP_C3HHeJ_P0080076 Clec1a protein_coding protein_coding MGP_C3HHeJ_T0080077.1 MGP_C3HHeJ_G0031050.1 mouse_genomes_project 6 131698622 131720561 - MGP_C3HHeJ_P0080077 Clec1a protein_coding protein_coding MGP_C3HHeJ_T0080078.1 MGP_C3HHeJ_G0031050.1 mouse_genomes_project 6 131698693 131720545 - MGP_C3HHeJ_P0080078 Clec1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076299.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27046072 27118944 - MGP_C3HHeJ_P0076299 Tnpo3 protein_coding protein_coding MGP_C3HHeJ_T0076300.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27046072 27118664 - MGP_C3HHeJ_P0076300 Tnpo3 protein_coding protein_coding MGP_C3HHeJ_T0076301.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27046072 27118542 - MGP_C3HHeJ_P0076301 Tnpo3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076302.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27046176 27065286 - MGP_C3HHeJ_P0076302 Tnpo3 protein_coding protein_coding MGP_C3HHeJ_T0076304.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27046764 27118868 - MGP_C3HHeJ_P0076304 Tnpo3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076305.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27060074 27062257 - Tnpo3 protein_coding retained_intron MGP_C3HHeJ_T0076306.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27070068 27118680 - Tnpo3 protein_coding retained_intron MGP_C3HHeJ_T0076307.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27074845 27079340 - Tnpo3 protein_coding retained_intron MGP_C3HHeJ_T0076308.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27087618 27091465 - Tnpo3 protein_coding retained_intron MGP_C3HHeJ_T0076309.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27089119 27118876 - Tnpo3 protein_coding retained_intron MGP_C3HHeJ_T0076310.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27092421 27118691 - Tnpo3 protein_coding retained_intron MGP_C3HHeJ_T0076311.1 MGP_C3HHeJ_G0030224.1 mouse_genomes_project 6 27098166 27118670 - Tnpo3 protein_coding processed_transcript MGP_C3HHeJ_T0100782.1 MGP_C3HHeJ_G0038976.1 mouse_genomes_project 6 111278485 111278681 + Gm24533 snoRNA snoRNA MGP_C3HHeJ_T0008450.1 MGP_C3HHeJ_G0006834.1 mouse_genomes_project 6 28683724 28684128 - Gm27019 lincRNA lincRNA MGP_C3HHeJ_T0015051.1 MGP_C3HHeJ_G0013155.1 mouse_genomes_project 6 3471798 3472596 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004832.1 MGP_C3HHeJ_G0004146.1 mouse_genomes_project 6 14053939 14164949 - Gm4876 antisense antisense MGP_C3HHeJ_T0004833.1 MGP_C3HHeJ_G0004146.1 mouse_genomes_project 6 14065190 14165293 - Gm4876 antisense antisense MGP_C3HHeJ_T0004834.1 MGP_C3HHeJ_G0004146.1 mouse_genomes_project 6 14086775 14164925 - Gm4876 antisense antisense MGP_C3HHeJ_T0004835.1 MGP_C3HHeJ_G0004146.1 mouse_genomes_project 6 14100971 14165077 - Gm4876 antisense antisense MGP_C3HHeJ_T0004836.1 MGP_C3HHeJ_G0004146.1 mouse_genomes_project 6 14154915 14165206 - Gm4876 antisense antisense MGP_C3HHeJ_T0004837.1 MGP_C3HHeJ_G0004146.1 mouse_genomes_project 6 14164848 14165270 - Gm4876 antisense antisense MGP_C3HHeJ_T0018049.1 MGP_C3HHeJ_G0015395.1 mouse_genomes_project 6 56271208 56451253 + processed_transcript processed_transcript MGP_C3HHeJ_T0078595.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214720 96223215 + MGP_C3HHeJ_P0078595 Cnbp protein_coding protein_coding MGP_C3HHeJ_T0078596.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214746 96222748 + MGP_C3HHeJ_P0078596 Cnbp protein_coding protein_coding MGP_C3HHeJ_T0078597.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214766 96221943 + MGP_C3HHeJ_P0078597 Cnbp protein_coding protein_coding MGP_C3HHeJ_T0078598.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214767 96221830 + Cnbp protein_coding retained_intron MGP_C3HHeJ_T0078599.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214796 96222748 + MGP_C3HHeJ_P0078599 Cnbp protein_coding protein_coding MGP_C3HHeJ_T0078600.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214799 96221911 + Cnbp protein_coding retained_intron MGP_C3HHeJ_T0078601.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96214804 96221891 + Cnbp protein_coding retained_intron MGP_C3HHeJ_T0078602.1 MGP_C3HHeJ_G0030730.1 mouse_genomes_project 6 96219512 96220300 + Cnbp protein_coding retained_intron MGP_C3HHeJ_T0008624.1 MGP_C3HHeJ_G0006962.1 mouse_genomes_project 6 110956660 110977876 + lincRNA lincRNA MGP_C3HHeJ_T0015376.1 MGP_C3HHeJ_G0013480.1 mouse_genomes_project 6 120042974 120043406 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078930.1 MGP_C3HHeJ_G0030796.1 mouse_genomes_project 6 100585581 100596758 + MGP_C3HHeJ_P0078930 Clec4f protein_coding protein_coding MGP_C3HHeJ_T0078931.1 MGP_C3HHeJ_G0030796.1 mouse_genomes_project 6 100585647 100596083 + Clec4f protein_coding processed_transcript MGP_C3HHeJ_T0008442.1 MGP_C3HHeJ_G0006829.1 mouse_genomes_project 6 26457101 26506266 + Gm3294 lincRNA lincRNA MGP_C3HHeJ_T0076503.1 MGP_C3HHeJ_G0030256.1 mouse_genomes_project 6 32173717 32201155 + MGP_C3HHeJ_P0076503 Bpgm protein_coding protein_coding MGP_C3HHeJ_T0076504.1 MGP_C3HHeJ_G0030256.1 mouse_genomes_project 6 32173866 32186579 + Bpgm protein_coding retained_intron MGP_C3HHeJ_T0076505.1 MGP_C3HHeJ_G0030256.1 mouse_genomes_project 6 32173962 32185183 + MGP_C3HHeJ_P0076505 Bpgm protein_coding protein_coding MGP_C3HHeJ_T0076506.1 MGP_C3HHeJ_G0030256.1 mouse_genomes_project 6 32173989 32185243 + MGP_C3HHeJ_P0076506 Bpgm protein_coding protein_coding MGP_C3HHeJ_T0076507.1 MGP_C3HHeJ_G0030256.1 mouse_genomes_project 6 32174652 32185344 + MGP_C3HHeJ_P0076507 Bpgm protein_coding protein_coding MGP_C3HHeJ_T0008629.1 MGP_C3HHeJ_G0006967.1 mouse_genomes_project 6 113180621 113202196 - Gm44174 lincRNA lincRNA MGP_C3HHeJ_T0001874.1 MGP_C3HHeJ_G0001796.1 mouse_genomes_project 6 1358937 1359874 + TEC TEC MGP_C3HHeJ_T0099527.1 MGP_C3HHeJ_G0037721.1 mouse_genomes_project 6 79653320 79653386 + Gm25656 snRNA snRNA MGP_C3HHeJ_T0076701.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37293765 37320576 - MGP_C3HHeJ_P0076701 Mkrn1 protein_coding protein_coding MGP_C3HHeJ_T0076702.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37295103 37301476 - MGP_C3HHeJ_P0076702 Mkrn1 protein_coding protein_coding MGP_C3HHeJ_T0076703.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37296714 37320360 - MGP_C3HHeJ_P0076703 Mkrn1 protein_coding protein_coding MGP_C3HHeJ_T0076704.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37296720 37320651 - MGP_C3HHeJ_P0076704 Mkrn1 protein_coding protein_coding MGP_C3HHeJ_T0076705.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37297235 37301827 - Mkrn1 protein_coding retained_intron MGP_C3HHeJ_T0076706.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37301556 37320050 - MGP_C3HHeJ_P0076706 Mkrn1 protein_coding protein_coding MGP_C3HHeJ_T0076707.1 MGP_C3HHeJ_G0030293.1 mouse_genomes_project 6 37302284 37320591 - MGP_C3HHeJ_P0076707 Mkrn1 protein_coding protein_coding MGP_C3HHeJ_T0079995.1 MGP_C3HHeJ_G0031027.1 mouse_genomes_project 6 130498564 130507468 + MGP_C3HHeJ_P0079995 protein_coding protein_coding MGP_C3HHeJ_T0079996.1 MGP_C3HHeJ_G0031027.1 mouse_genomes_project 6 130498576 130507361 + MGP_C3HHeJ_P0079996 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079997.1 MGP_C3HHeJ_G0031027.1 mouse_genomes_project 6 130499028 130508186 + MGP_C3HHeJ_P0079997 protein_coding protein_coding MGP_C3HHeJ_T0079998.1 MGP_C3HHeJ_G0031027.1 mouse_genomes_project 6 130499228 130508186 + MGP_C3HHeJ_P0079998 protein_coding protein_coding MGP_C3HHeJ_T0079999.1 MGP_C3HHeJ_G0031027.1 mouse_genomes_project 6 130499306 130508186 + protein_coding retained_intron MGP_C3HHeJ_T0080000.1 MGP_C3HHeJ_G0031027.1 mouse_genomes_project 6 130499551 130516657 + MGP_C3HHeJ_P0080000 protein_coding non_stop_decay MGP_C3HHeJ_T0002670.1 MGP_C3HHeJ_G0002552.1 mouse_genomes_project 6 39108244 39108729 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0002079.1 MGP_C3HHeJ_G0002000.1 mouse_genomes_project 6 111532458 111533416 + TEC TEC MGP_C3HHeJ_T0077821.1 MGP_C3HHeJ_G0030580.1 mouse_genomes_project 6 67664851 67734969 - MGP_C3HHeJ_P0077821 Pparg protein_coding protein_coding MGP_C3HHeJ_T0077822.1 MGP_C3HHeJ_G0030580.1 mouse_genomes_project 6 67665055 67722096 - MGP_C3HHeJ_P0077822 Pparg protein_coding protein_coding MGP_C3HHeJ_T0077823.1 MGP_C3HHeJ_G0030580.1 mouse_genomes_project 6 67691488 67715068 - Pparg protein_coding retained_intron MGP_C3HHeJ_T0077824.1 MGP_C3HHeJ_G0030580.1 mouse_genomes_project 6 67691864 67775588 - MGP_C3HHeJ_P0077824 Pparg protein_coding protein_coding MGP_C3HHeJ_T0077825.1 MGP_C3HHeJ_G0030580.1 mouse_genomes_project 6 67713521 67796933 - MGP_C3HHeJ_P0077825 Pparg protein_coding protein_coding MGP_C3HHeJ_T0077826.1 MGP_C3HHeJ_G0030580.1 mouse_genomes_project 6 67775465 67796932 - Pparg protein_coding retained_intron MGP_C3HHeJ_T0080596.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148586021 148620929 - MGP_C3HHeJ_P0080596 Kras protein_coding protein_coding MGP_C3HHeJ_T0080597.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148589302 148600781 - Kras protein_coding processed_transcript MGP_C3HHeJ_T0080598.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148589543 148620929 - MGP_C3HHeJ_P0080598 Kras protein_coding protein_coding MGP_C3HHeJ_T0080599.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148589567 148620867 - MGP_C3HHeJ_P0080599 Kras protein_coding protein_coding MGP_C3HHeJ_T0080600.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148589619 148620860 - MGP_C3HHeJ_P0080600 Kras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080601.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148589932 148595514 - Kras protein_coding retained_intron MGP_C3HHeJ_T0080602.1 MGP_C3HHeJ_G0031183.1 mouse_genomes_project 6 148616766 148620892 - MGP_C3HHeJ_P0080602 Kras protein_coding protein_coding MGP_C3HHeJ_T0002087.1 MGP_C3HHeJ_G0002008.1 mouse_genomes_project 6 112682763 112683389 + TEC TEC MGP_C3HHeJ_T0077827.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67877424 68036188 - MGP_C3HHeJ_P0077827 Syn2 protein_coding protein_coding MGP_C3HHeJ_T0077828.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67880749 67905961 - Syn2 protein_coding retained_intron MGP_C3HHeJ_T0077829.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67882886 67921906 - Syn2 protein_coding processed_transcript MGP_C3HHeJ_T0077830.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67882886 68036155 - MGP_C3HHeJ_P0077830 Syn2 protein_coding protein_coding MGP_C3HHeJ_T0077831.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67882886 68036203 - MGP_C3HHeJ_P0077831 Syn2 protein_coding protein_coding MGP_C3HHeJ_T0077832.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67884354 68036203 - Syn2 protein_coding retained_intron MGP_C3HHeJ_T0077836.1 MGP_C3HHeJ_G0030581.1 mouse_genomes_project 6 67915715 67947482 - Syn2 protein_coding processed_transcript MGP_C3HHeJ_T0004937.1 MGP_C3HHeJ_G0004221.1 mouse_genomes_project 6 93336938 93340185 + Gm15756 antisense antisense MGP_C3HHeJ_T0004876.1 MGP_C3HHeJ_G0004180.1 mouse_genomes_project 6 47395752 47407792 - 4930563H07Rik antisense antisense MGP_C3HHeJ_T0080072.1 MGP_C3HHeJ_G0031049.1 mouse_genomes_project 6 131677668 131693484 + MGP_C3HHeJ_P0080072 Clec9a protein_coding protein_coding MGP_C3HHeJ_T0080073.1 MGP_C3HHeJ_G0031049.1 mouse_genomes_project 6 131677669 131691290 + MGP_C3HHeJ_P0080073 Clec9a protein_coding protein_coding MGP_C3HHeJ_T0080074.1 MGP_C3HHeJ_G0031049.1 mouse_genomes_project 6 131677761 131691079 + MGP_C3HHeJ_P0080074 Clec9a protein_coding protein_coding MGP_C3HHeJ_T0080075.1 MGP_C3HHeJ_G0031049.1 mouse_genomes_project 6 131677761 131691079 + MGP_C3HHeJ_P0080075 Clec9a protein_coding protein_coding MGP_C3HHeJ_T0079321.1 MGP_C3HHeJ_G0030872.1 mouse_genomes_project 6 113018331 113036713 - MGP_C3HHeJ_P0079321 Rnf103 protein_coding protein_coding MGP_C3HHeJ_T0079322.1 MGP_C3HHeJ_G0030872.1 mouse_genomes_project 6 113018331 113036729 - MGP_C3HHeJ_P0079322 Rnf103 protein_coding protein_coding MGP_C3HHeJ_T0079323.1 MGP_C3HHeJ_G0030872.1 mouse_genomes_project 6 113018449 113036620 - MGP_C3HHeJ_P0079323 Rnf103 protein_coding protein_coding MGP_C3HHeJ_T0079324.1 MGP_C3HHeJ_G0030872.1 mouse_genomes_project 6 113023470 113026736 - Rnf103 protein_coding retained_intron MGP_C3HHeJ_T0015326.1 MGP_C3HHeJ_G0013430.1 mouse_genomes_project 6 113205399 113205798 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008607.1 MGP_C3HHeJ_G0006950.1 mouse_genomes_project 6 99681663 99682109 - 4930504D19Rik lincRNA lincRNA MGP_C3HHeJ_T0098166.1 MGP_C3HHeJ_G0036378.1 mouse_genomes_project 6 96809191 96809303 - n-R5s164 rRNA rRNA MGP_C3HHeJ_T0099509.1 MGP_C3HHeJ_G0037703.1 mouse_genomes_project 6 30755731 30755835 - Gm22321 snRNA snRNA MGP_C3HHeJ_T0102129.1 MGP_C3HHeJ_G0040093.1 mouse_genomes_project 6 135154453 135158662 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102069.1 MGP_C3HHeJ_G0040034.1 mouse_genomes_project 6 32073211 32080186 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015197.1 MGP_C3HHeJ_G0013301.1 mouse_genomes_project 6 62992912 62993200 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100800.1 MGP_C3HHeJ_G0038994.1 mouse_genomes_project 6 127120293 127120618 - Scarna10 snoRNA snoRNA MGP_C3HHeJ_T0102076.1 MGP_C3HHeJ_G0040041.1 mouse_genomes_project 6 40474819 40474961 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099508.1 MGP_C3HHeJ_G0037702.1 mouse_genomes_project 6 27503696 27503803 + Gm24536 snRNA snRNA MGP_C3HHeJ_T0015367.1 MGP_C3HHeJ_G0013471.1 mouse_genomes_project 6 119733630 119735419 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005008.1 MGP_C3HHeJ_G0004267.1 mouse_genomes_project 6 126630617 126638669 + Gm20531 antisense antisense MGP_C3HHeJ_T0002127.1 MGP_C3HHeJ_G0002048.1 mouse_genomes_project 6 140243851 140244906 - TEC TEC MGP_C3HHeJ_T0008530.1 MGP_C3HHeJ_G0006888.1 mouse_genomes_project 6 55268778 55351077 - Gm8239 lincRNA lincRNA MGP_C3HHeJ_T0102116.1 MGP_C3HHeJ_G0040081.1 mouse_genomes_project 6 125982157 126015769 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101448.1 MGP_C3HHeJ_G0039462.1 mouse_genomes_project 6 123312362 123766551 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0080476.1 MGP_C3HHeJ_G0031165.1 mouse_genomes_project 6 145601002 145618565 + MGP_C3HHeJ_P0080476 Pyroxd1 protein_coding protein_coding MGP_C3HHeJ_T0080477.1 MGP_C3HHeJ_G0031165.1 mouse_genomes_project 6 145601015 145603223 + Pyroxd1 protein_coding retained_intron MGP_C3HHeJ_T0080478.1 MGP_C3HHeJ_G0031165.1 mouse_genomes_project 6 145601026 145617359 + Pyroxd1 protein_coding retained_intron MGP_C3HHeJ_T0080479.1 MGP_C3HHeJ_G0031165.1 mouse_genomes_project 6 145602284 145612828 + Pyroxd1 protein_coding processed_transcript MGP_C3HHeJ_T0080481.1 MGP_C3HHeJ_G0031165.1 mouse_genomes_project 6 145608288 145610040 + Pyroxd1 protein_coding retained_intron MGP_C3HHeJ_T0080568.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148481788 148543889 + MGP_C3HHeJ_P0080568 Lrmp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080569.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148487988 148543895 + MGP_C3HHeJ_P0080569 Lrmp protein_coding protein_coding MGP_C3HHeJ_T0080570.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148487991 148536879 + Lrmp protein_coding retained_intron MGP_C3HHeJ_T0080571.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148488030 148529134 + Lrmp protein_coding retained_intron MGP_C3HHeJ_T0080572.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148504814 148528581 + MGP_C3HHeJ_P0080572 Lrmp protein_coding protein_coding MGP_C3HHeJ_T0080573.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148504854 148543641 + MGP_C3HHeJ_P0080573 Lrmp protein_coding unknown_likely_coding MGP_C3HHeJ_T0080574.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148512818 148526052 + Lrmp protein_coding retained_intron MGP_C3HHeJ_T0080575.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148512818 148529147 + MGP_C3HHeJ_P0080575 Lrmp protein_coding protein_coding MGP_C3HHeJ_T0080576.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148512821 148543889 + MGP_C3HHeJ_P0080576 Lrmp protein_coding protein_coding MGP_C3HHeJ_T0080577.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148525138 148539907 + Lrmp protein_coding processed_transcript MGP_C3HHeJ_T0080578.1 MGP_C3HHeJ_G0031180.1 mouse_genomes_project 6 148537699 148543638 + Lrmp protein_coding retained_intron MGP_C3HHeJ_T0008640.1 MGP_C3HHeJ_G0006977.1 mouse_genomes_project 6 126123165 126126260 + Gm43971 lincRNA lincRNA MGP_C3HHeJ_T0010710.1 MGP_C3HHeJ_G0008843.1 mouse_genomes_project 6 100841344 100841451 + Mir6374 miRNA miRNA MGP_C3HHeJ_T0100780.1 MGP_C3HHeJ_G0038974.1 mouse_genomes_project 6 102477282 102477400 - Gm22530 snoRNA snoRNA MGP_C3HHeJ_T0079946.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129505010 129557572 + MGP_C3HHeJ_P0079946 Parp11 protein_coding protein_coding MGP_C3HHeJ_T0079947.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129507403 129540564 + MGP_C3HHeJ_P0079947 Parp11 protein_coding protein_coding MGP_C3HHeJ_T0079948.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129511763 129534458 + Parp11 protein_coding retained_intron MGP_C3HHeJ_T0079949.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129511791 129540515 + MGP_C3HHeJ_P0079949 Parp11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079950.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129511809 129533356 + Parp11 protein_coding retained_intron MGP_C3HHeJ_T0079951.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129511818 129541486 + MGP_C3HHeJ_P0079951 Parp11 protein_coding protein_coding MGP_C3HHeJ_T0079952.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129511866 129557593 + MGP_C3HHeJ_P0079952 Parp11 protein_coding protein_coding MGP_C3HHeJ_T0079953.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129533956 129535716 + Parp11 protein_coding retained_intron MGP_C3HHeJ_T0079954.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129536574 129541377 + Parp11 protein_coding retained_intron MGP_C3HHeJ_T0079955.1 MGP_C3HHeJ_G0031016.1 mouse_genomes_project 6 129540085 129553378 + Parp11 protein_coding retained_intron MGP_C3HHeJ_T0078130.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76739111 77803216 - MGP_C3HHeJ_P0078130 Cntn4 protein_coding protein_coding MGP_C3HHeJ_T0078131.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76739116 77803246 - MGP_C3HHeJ_P0078131 Cntn4 protein_coding protein_coding MGP_C3HHeJ_T0078132.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76739229 76780879 - Cntn4 protein_coding processed_transcript MGP_C3HHeJ_T0078133.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76740519 76744137 - Cntn4 protein_coding processed_transcript MGP_C3HHeJ_T0078134.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76740663 76933436 - Cntn4 protein_coding processed_transcript MGP_C3HHeJ_T0078135.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76757320 76758294 - Cntn4 protein_coding retained_intron MGP_C3HHeJ_T0078136.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76763238 77543152 - MGP_C3HHeJ_P0078136 Cntn4 protein_coding protein_coding MGP_C3HHeJ_T0078137.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76763244 77803246 - MGP_C3HHeJ_P0078137 Cntn4 protein_coding protein_coding MGP_C3HHeJ_T0078138.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76764021 77338293 - MGP_C3HHeJ_P0078138 Cntn4 protein_coding protein_coding MGP_C3HHeJ_T0078139.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76824753 77338534 - MGP_C3HHeJ_P0078139 Cntn4 protein_coding protein_coding MGP_C3HHeJ_T0078140.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 76921680 77338381 - Cntn4 protein_coding processed_transcript MGP_C3HHeJ_T0078141.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 77105197 77338244 - Cntn4 protein_coding processed_transcript MGP_C3HHeJ_T0078142.1 MGP_C3HHeJ_G0030635.1 mouse_genomes_project 6 77637297 77803331 - Cntn4 protein_coding processed_transcript MGP_C3HHeJ_T0080079.1 MGP_C3HHeJ_G0031051.1 mouse_genomes_project 6 131753237 131775295 - MGP_C3HHeJ_P0080079 Olr1 protein_coding protein_coding MGP_C3HHeJ_T0080080.1 MGP_C3HHeJ_G0031051.1 mouse_genomes_project 6 131755796 131775237 - MGP_C3HHeJ_P0080080 Olr1 protein_coding protein_coding MGP_C3HHeJ_T0080081.1 MGP_C3HHeJ_G0031051.1 mouse_genomes_project 6 131755796 131775237 - MGP_C3HHeJ_P0080081 Olr1 protein_coding protein_coding MGP_C3HHeJ_T0080082.1 MGP_C3HHeJ_G0031051.1 mouse_genomes_project 6 131755835 131764998 - MGP_C3HHeJ_P0080082 Olr1 protein_coding protein_coding MGP_C3HHeJ_T0080083.1 MGP_C3HHeJ_G0031051.1 mouse_genomes_project 6 131768051 131775295 - MGP_C3HHeJ_P0080083 Olr1 protein_coding protein_coding MGP_C3HHeJ_T0077271.1 MGP_C3HHeJ_G0030453.1 mouse_genomes_project 6 52941303 52943382 + Prr15 protein_coding retained_intron MGP_C3HHeJ_T0077272.1 MGP_C3HHeJ_G0030453.1 mouse_genomes_project 6 52942351 52945670 + MGP_C3HHeJ_P0077272 Prr15 protein_coding protein_coding MGP_C3HHeJ_T0002069.1 MGP_C3HHeJ_G0001990.1 mouse_genomes_project 6 106600052 106602847 + TEC TEC MGP_C3HHeJ_T0015320.1 MGP_C3HHeJ_G0013424.1 mouse_genomes_project 6 112382922 112383418 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010674.1 MGP_C3HHeJ_G0008807.1 mouse_genomes_project 6 34171672 34171756 + Mir490 miRNA miRNA MGP_C3HHeJ_T0076956.1 MGP_C3HHeJ_G0030380.1 mouse_genomes_project 6 46166641 46174686 + Zfp398 protein_coding retained_intron MGP_C3HHeJ_T0076957.1 MGP_C3HHeJ_G0030380.1 mouse_genomes_project 6 46166644 46193517 + MGP_C3HHeJ_P0076957 Zfp398 protein_coding protein_coding MGP_C3HHeJ_T0076958.1 MGP_C3HHeJ_G0030380.1 mouse_genomes_project 6 46166675 46199353 + MGP_C3HHeJ_P0076958 Zfp398 protein_coding protein_coding MGP_C3HHeJ_T0077937.1 MGP_C3HHeJ_G0030601.1 mouse_genomes_project 6 69732482 69733809 - Creld1 protein_coding retained_intron MGP_C3HHeJ_T0077938.1 MGP_C3HHeJ_G0030601.1 mouse_genomes_project 6 69732487 69742527 - MGP_C3HHeJ_P0077938 Creld1 protein_coding protein_coding MGP_C3HHeJ_T0077939.1 MGP_C3HHeJ_G0030601.1 mouse_genomes_project 6 69732490 69733807 - Creld1 protein_coding retained_intron MGP_C3HHeJ_T0077940.1 MGP_C3HHeJ_G0030601.1 mouse_genomes_project 6 69736098 69738330 - Creld1 protein_coding retained_intron MGP_C3HHeJ_T0077941.1 MGP_C3HHeJ_G0030601.1 mouse_genomes_project 6 69736584 69742401 - Creld1 protein_coding retained_intron MGP_C3HHeJ_T0077942.1 MGP_C3HHeJ_G0030601.1 mouse_genomes_project 6 69737415 69741969 - Creld1 protein_coding retained_intron MGP_C3HHeJ_T0018080.1 MGP_C3HHeJ_G0015406.1 mouse_genomes_project 6 122460785 122466249 + Gm4651 processed_transcript antisense MGP_C3HHeJ_T0018081.1 MGP_C3HHeJ_G0015406.1 mouse_genomes_project 6 122460917 122462409 + Gm4651 processed_transcript retained_intron MGP_C3HHeJ_T0002113.1 MGP_C3HHeJ_G0002034.1 mouse_genomes_project 6 131790696 131794841 + TEC TEC MGP_C3HHeJ_T0008704.1 MGP_C3HHeJ_G0007022.1 mouse_genomes_project 6 152093548 152110911 - 4930528G23Rik lincRNA lincRNA MGP_C3HHeJ_T0079603.1 MGP_C3HHeJ_G0030946.1 mouse_genomes_project 6 125380314 125414621 - MGP_C3HHeJ_P0079603 protein_coding protein_coding MGP_C3HHeJ_T0002123.1 MGP_C3HHeJ_G0002044.1 mouse_genomes_project 6 139632367 139634758 + TEC TEC MGP_C3HHeJ_T0000289.1 MGP_C3HHeJ_G0000239.1 mouse_genomes_project 6 116454110 116454397 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0002074.1 MGP_C3HHeJ_G0001995.1 mouse_genomes_project 6 106890011 106894124 + TEC TEC MGP_C3HHeJ_T0004986.1 MGP_C3HHeJ_G0004248.1 mouse_genomes_project 6 104316310 104404236 + Gm4409 antisense antisense MGP_C3HHeJ_T0079545.1 MGP_C3HHeJ_G0030925.1 mouse_genomes_project 6 124183351 124194359 + MGP_C3HHeJ_P0079545 Aicda protein_coding protein_coding MGP_C3HHeJ_T0079546.1 MGP_C3HHeJ_G0030925.1 mouse_genomes_project 6 124190648 124193255 + MGP_C3HHeJ_P0079546 Aicda protein_coding protein_coding MGP_C3HHeJ_T0076815.1 MGP_C3HHeJ_G0030334.1 mouse_genomes_project 6 39986659 39991128 + MGP_C3HHeJ_P0076815 Sval1 protein_coding protein_coding MGP_C3HHeJ_T0002040.1 MGP_C3HHeJ_G0001961.1 mouse_genomes_project 6 96917945 96919996 + TEC TEC MGP_C3HHeJ_T0002096.1 MGP_C3HHeJ_G0002017.1 mouse_genomes_project 6 122307777 122309867 - TEC TEC MGP_C3HHeJ_T0015470.1 MGP_C3HHeJ_G0013574.1 mouse_genomes_project 6 150056540 150056929 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079865.1 MGP_C3HHeJ_G0030997.1 mouse_genomes_project 6 127259696 127269444 + MGP_C3HHeJ_P0079865 Scnn1a protein_coding protein_coding MGP_C3HHeJ_T0079866.1 MGP_C3HHeJ_G0030997.1 mouse_genomes_project 6 127259770 127282823 + MGP_C3HHeJ_P0079866 Scnn1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079867.1 MGP_C3HHeJ_G0030997.1 mouse_genomes_project 6 127260012 127283046 + MGP_C3HHeJ_P0079867 Scnn1a protein_coding protein_coding MGP_C3HHeJ_T0079868.1 MGP_C3HHeJ_G0030997.1 mouse_genomes_project 6 127260372 127282522 + MGP_C3HHeJ_P0079868 Scnn1a protein_coding protein_coding MGP_C3HHeJ_T0015071.1 MGP_C3HHeJ_G0013175.1 mouse_genomes_project 6 10846219 10846513 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080540.1 MGP_C3HHeJ_G0031177.1 mouse_genomes_project 6 146443000 146496869 + MGP_C3HHeJ_P0080540 Etnk1 protein_coding protein_coding MGP_C3HHeJ_T0080541.1 MGP_C3HHeJ_G0031177.1 mouse_genomes_project 6 146443009 146486933 + MGP_C3HHeJ_P0080541 Etnk1 protein_coding protein_coding MGP_C3HHeJ_T0080542.1 MGP_C3HHeJ_G0031177.1 mouse_genomes_project 6 146443033 146469875 + Etnk1 protein_coding retained_intron MGP_C3HHeJ_T0080543.1 MGP_C3HHeJ_G0031177.1 mouse_genomes_project 6 146443033 146510669 + MGP_C3HHeJ_P0080543 Etnk1 protein_coding protein_coding MGP_C3HHeJ_T0075912.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5454969 5603592 - MGP_C3HHeJ_P0075912 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075913.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5454969 5603877 - MGP_C3HHeJ_P0075913 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075914.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5454969 5603922 - MGP_C3HHeJ_P0075914 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075915.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5454969 5583521 - MGP_C3HHeJ_P0075915 Ica1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075916.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5455141 5475773 - Ica1 protein_coding processed_transcript MGP_C3HHeJ_T0075917.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5486167 5603592 - MGP_C3HHeJ_P0075917 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075918.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5486874 5500781 - MGP_C3HHeJ_P0075918 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075919.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5486884 5603925 - MGP_C3HHeJ_P0075919 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075920.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5486885 5562314 - MGP_C3HHeJ_P0075920 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075921.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5555656 5603926 - Ica1 protein_coding processed_transcript MGP_C3HHeJ_T0075922.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5574850 5595980 - MGP_C3HHeJ_P0075922 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0075923.1 MGP_C3HHeJ_G0030148.1 mouse_genomes_project 6 5579755 5603561 - MGP_C3HHeJ_P0075923 Ica1 protein_coding protein_coding MGP_C3HHeJ_T0078860.1 MGP_C3HHeJ_G0030786.1 mouse_genomes_project 6 99629791 99646422 + MGP_C3HHeJ_P0078860 Cyp26b1 protein_coding protein_coding MGP_C3HHeJ_T0078861.1 MGP_C3HHeJ_G0030786.1 mouse_genomes_project 6 99629819 99643596 + MGP_C3HHeJ_P0078861 Cyp26b1 protein_coding protein_coding MGP_C3HHeJ_T0079123.1 MGP_C3HHeJ_G0030832.1 mouse_genomes_project 6 104499643 104500587 - MGP_C3HHeJ_P0079123 Gm20594 protein_coding protein_coding MGP_C3HHeJ_T0075956.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10493092 10520890 - MGP_C3HHeJ_P0075956 Tmem168 protein_coding protein_coding MGP_C3HHeJ_T0075957.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10495192 10520788 - MGP_C3HHeJ_P0075957 Tmem168 protein_coding protein_coding MGP_C3HHeJ_T0075958.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10516167 10520538 - Tmem168 protein_coding processed_transcript MGP_C3HHeJ_T0075959.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10516183 10520795 - Tmem168 protein_coding processed_transcript MGP_C3HHeJ_T0075960.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10518726 10520834 - Tmem168 protein_coding processed_transcript MGP_C3HHeJ_T0075961.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10519387 10520809 - Tmem168 protein_coding processed_transcript MGP_C3HHeJ_T0075962.1 MGP_C3HHeJ_G0030155.1 mouse_genomes_project 6 10520076 10520817 - Tmem168 protein_coding processed_transcript MGP_C3HHeJ_T0077988.1 MGP_C3HHeJ_G0030610.1 mouse_genomes_project 6 69886405 69896001 + MGP_C3HHeJ_P0077988 Camk1 protein_coding protein_coding MGP_C3HHeJ_T0077989.1 MGP_C3HHeJ_G0030610.1 mouse_genomes_project 6 69886411 69892237 + MGP_C3HHeJ_P0077989 Camk1 protein_coding protein_coding MGP_C3HHeJ_T0077990.1 MGP_C3HHeJ_G0030610.1 mouse_genomes_project 6 69886426 69889457 + Camk1 protein_coding retained_intron MGP_C3HHeJ_T0077991.1 MGP_C3HHeJ_G0030610.1 mouse_genomes_project 6 69886485 69895988 + Camk1 protein_coding retained_intron MGP_C3HHeJ_T0077992.1 MGP_C3HHeJ_G0030610.1 mouse_genomes_project 6 69889442 69893410 + Camk1 protein_coding retained_intron MGP_C3HHeJ_T0077993.1 MGP_C3HHeJ_G0030610.1 mouse_genomes_project 6 69893503 69895997 + Camk1 protein_coding retained_intron MGP_C3HHeJ_T0077689.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66420057 66461384 + MGP_C3HHeJ_P0077689 Rassf4 protein_coding protein_coding MGP_C3HHeJ_T0077690.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66420200 66455143 + MGP_C3HHeJ_P0077690 Rassf4 protein_coding protein_coding MGP_C3HHeJ_T0077691.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66420211 66448357 + MGP_C3HHeJ_P0077691 Rassf4 protein_coding protein_coding MGP_C3HHeJ_T0077692.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66420220 66451420 + Rassf4 protein_coding retained_intron MGP_C3HHeJ_T0077693.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66420238 66448428 + MGP_C3HHeJ_P0077693 Rassf4 protein_coding protein_coding MGP_C3HHeJ_T0077697.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66446317 66449099 + Rassf4 protein_coding retained_intron MGP_C3HHeJ_T0077698.1 MGP_C3HHeJ_G0030554.1 mouse_genomes_project 6 66453352 66454879 + Rassf4 protein_coding processed_transcript MGP_C3HHeJ_T0078565.1 MGP_C3HHeJ_G0030725.1 mouse_genomes_project 6 95936189 95957617 - MGP_C3HHeJ_P0078565 Rpn1 protein_coding protein_coding MGP_C3HHeJ_T0078566.1 MGP_C3HHeJ_G0030725.1 mouse_genomes_project 6 95938106 95939923 - Rpn1 protein_coding retained_intron MGP_C3HHeJ_T0078567.1 MGP_C3HHeJ_G0030725.1 mouse_genomes_project 6 95940131 95942207 - Rpn1 protein_coding retained_intron MGP_C3HHeJ_T0078568.1 MGP_C3HHeJ_G0030725.1 mouse_genomes_project 6 95940388 95947783 - Rpn1 protein_coding retained_intron MGP_C3HHeJ_T0078569.1 MGP_C3HHeJ_G0030725.1 mouse_genomes_project 6 95946037 95957536 - MGP_C3HHeJ_P0078569 Rpn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002020.1 MGP_C3HHeJ_G0001941.1 mouse_genomes_project 6 93638817 93641933 - TEC TEC MGP_C3HHeJ_T0077057.1 MGP_C3HHeJ_G0030404.1 mouse_genomes_project 6 47138706 47143365 + MGP_C3HHeJ_P0077057 protein_coding protein_coding MGP_C3HHeJ_T0077058.1 MGP_C3HHeJ_G0030404.1 mouse_genomes_project 6 47138720 47140677 + protein_coding retained_intron MGP_C3HHeJ_T0077059.1 MGP_C3HHeJ_G0030404.1 mouse_genomes_project 6 47138740 47142438 + protein_coding retained_intron MGP_C3HHeJ_T0015387.1 MGP_C3HHeJ_G0013491.1 mouse_genomes_project 6 123176787 123177194 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076731.1 MGP_C3HHeJ_G0030299.1 mouse_genomes_project 6 37730123 37740924 - MGP_C3HHeJ_P0076731 Mrps33 protein_coding protein_coding MGP_C3HHeJ_T0076732.1 MGP_C3HHeJ_G0030299.1 mouse_genomes_project 6 37731285 37740821 - MGP_C3HHeJ_P0076732 Mrps33 protein_coding protein_coding MGP_C3HHeJ_T0076733.1 MGP_C3HHeJ_G0030299.1 mouse_genomes_project 6 37731477 37735159 - MGP_C3HHeJ_P0076733 Mrps33 protein_coding protein_coding MGP_C3HHeJ_T0076734.1 MGP_C3HHeJ_G0030299.1 mouse_genomes_project 6 37734358 37740829 - Mrps33 protein_coding retained_intron MGP_C3HHeJ_T0000176.1 MGP_C3HHeJ_G0000134.1 mouse_genomes_project 6 116283346 116283826 + MGP_C3HHeJ_P0000176 Igkv10-96 IG_V_gene IG_V_gene MGP_C3HHeJ_T0011538.1 MGP_C3HHeJ_G0009671.1 mouse_genomes_project 6 27685148 27685475 - Gm25580 misc_RNA misc_RNA MGP_C3HHeJ_T0080176.1 MGP_C3HHeJ_G0031099.1 mouse_genomes_project 6 135732916 135733881 + MGP_C3HHeJ_P0080176 Tas2r129 protein_coding protein_coding MGP_C3HHeJ_T0079547.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124208938 124236354 - MGP_C3HHeJ_P0079547 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079548.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124208945 124234035 - MGP_C3HHeJ_P0079548 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079549.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124208947 124236281 - MGP_C3HHeJ_P0079549 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079550.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124215646 124236297 - MGP_C3HHeJ_P0079550 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079551.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124215672 124234266 - MGP_C3HHeJ_P0079551 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079552.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124215854 124236239 - MGP_C3HHeJ_P0079552 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079553.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124221234 124236280 - MGP_C3HHeJ_P0079553 Apobec1 protein_coding protein_coding MGP_C3HHeJ_T0079554.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124221967 124236274 - Apobec1 protein_coding retained_intron MGP_C3HHeJ_T0079555.1 MGP_C3HHeJ_G0030926.1 mouse_genomes_project 6 124230535 124234346 - Apobec1 protein_coding retained_intron MGP_C3HHeJ_T0018033.1 MGP_C3HHeJ_G0015391.1 mouse_genomes_project 6 50795679 50801080 + Hoxa11os processed_transcript antisense MGP_C3HHeJ_T0018034.1 MGP_C3HHeJ_G0015391.1 mouse_genomes_project 6 50796530 50801058 + Hoxa11os processed_transcript antisense MGP_C3HHeJ_T0018035.1 MGP_C3HHeJ_G0015391.1 mouse_genomes_project 6 50797257 50801084 + Hoxa11os processed_transcript antisense MGP_C3HHeJ_T0018036.1 MGP_C3HHeJ_G0015391.1 mouse_genomes_project 6 50797277 50801079 + Hoxa11os processed_transcript antisense MGP_C3HHeJ_T0018037.1 MGP_C3HHeJ_G0015391.1 mouse_genomes_project 6 50797509 50800669 + Hoxa11os processed_transcript retained_intron MGP_C3HHeJ_T0018038.1 MGP_C3HHeJ_G0015391.1 mouse_genomes_project 6 50799710 50801088 + Hoxa11os processed_transcript antisense MGP_C3HHeJ_T0005028.1 MGP_C3HHeJ_G0004283.1 mouse_genomes_project 6 137085298 137088428 - Gm17088 antisense antisense MGP_C3HHeJ_T0005009.1 MGP_C3HHeJ_G0004268.1 mouse_genomes_project 6 126820221 126830458 + A230083G16Rik antisense antisense MGP_C3HHeJ_T0078459.1 MGP_C3HHeJ_G0030711.1 mouse_genomes_project 6 94399777 94603151 + MGP_C3HHeJ_P0078459 Chchd6 protein_coding protein_coding MGP_C3HHeJ_T0078460.1 MGP_C3HHeJ_G0030711.1 mouse_genomes_project 6 94399777 94603156 + MGP_C3HHeJ_P0078460 Chchd6 protein_coding protein_coding MGP_C3HHeJ_T0078461.1 MGP_C3HHeJ_G0030711.1 mouse_genomes_project 6 94399818 94424408 + MGP_C3HHeJ_P0078461 Chchd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078462.1 MGP_C3HHeJ_G0030711.1 mouse_genomes_project 6 94399825 94568277 + Chchd6 protein_coding retained_intron MGP_C3HHeJ_T0015350.1 MGP_C3HHeJ_G0013454.1 mouse_genomes_project 6 117647744 117648668 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008639.1 MGP_C3HHeJ_G0006976.1 mouse_genomes_project 6 124013975 124015284 + 1700063H04Rik lincRNA lincRNA MGP_C3HHeJ_T0015314.1 MGP_C3HHeJ_G0013418.1 mouse_genomes_project 6 109191348 109192331 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015214.1 MGP_C3HHeJ_G0013318.1 mouse_genomes_project 6 69026939 69027579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004877.1 MGP_C3HHeJ_G0004181.1 mouse_genomes_project 6 49055353 49084554 + 5430402O13Rik antisense antisense MGP_C3HHeJ_T0004878.1 MGP_C3HHeJ_G0004181.1 mouse_genomes_project 6 49055448 49084511 + 5430402O13Rik antisense antisense MGP_C3HHeJ_T0010658.1 MGP_C3HHeJ_G0008791.1 mouse_genomes_project 6 441808 441915 - Mir489 miRNA miRNA MGP_C3HHeJ_T0002135.1 MGP_C3HHeJ_G0002056.1 mouse_genomes_project 6 144587718 144591553 + TEC TEC MGP_C3HHeJ_T0078700.1 MGP_C3HHeJ_G0030753.1 mouse_genomes_project 6 97590652 97592484 + MGP_C3HHeJ_P0078700 Pcbp1 protein_coding protein_coding MGP_C3HHeJ_T0079166.1 MGP_C3HHeJ_G0030846.1 mouse_genomes_project 6 111463631 111464376 + MGP_C3HHeJ_P0079166 protein_coding protein_coding MGP_C3HHeJ_T0018067.1 MGP_C3HHeJ_G0015401.1 mouse_genomes_project 6 111825080 111831000 - Gm20536 processed_transcript processed_transcript MGP_C3HHeJ_T0080518.1 MGP_C3HHeJ_G0031174.1 mouse_genomes_project 6 146053431 146073762 - MGP_C3HHeJ_P0080518 Sult6b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080519.1 MGP_C3HHeJ_G0031174.1 mouse_genomes_project 6 146054008 146073726 - MGP_C3HHeJ_P0080519 Sult6b2 protein_coding protein_coding MGP_C3HHeJ_T0000046.1 MGP_C3HHeJ_G0000037.1 mouse_genomes_project 6 113868020 113868063 - Igkj2 IG_J_gene processed_transcript MGP_C3HHeJ_T0000047.1 MGP_C3HHeJ_G0000037.1 mouse_genomes_project 6 113868024 113868063 - MGP_C3HHeJ_P0000047 Igkj2 IG_J_gene IG_J_gene MGP_C3HHeJ_T0015127.1 MGP_C3HHeJ_G0013231.1 mouse_genomes_project 6 39005146 39005527 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002000.1 MGP_C3HHeJ_G0001921.1 mouse_genomes_project 6 83978127 83981904 + TEC TEC MGP_C3HHeJ_T0005011.1 MGP_C3HHeJ_G0004270.1 mouse_genomes_project 6 127431056 127434414 + Gm28809 antisense antisense MGP_C3HHeJ_T0005012.1 MGP_C3HHeJ_G0004270.1 mouse_genomes_project 6 127431637 127433303 + Gm28809 antisense antisense MGP_C3HHeJ_T0079832.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127102132 127103415 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079833.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127102132 127125631 - MGP_C3HHeJ_P0079833 Ncapd2 protein_coding protein_coding MGP_C3HHeJ_T0079834.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127103969 127105229 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079835.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127105079 127105945 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079836.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127105190 127108054 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079837.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127105970 127108036 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079838.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127107500 127108675 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079839.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127107595 127110787 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079840.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127109900 127111439 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079841.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127111262 127113494 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079842.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127118230 127125533 - MGP_C3HHeJ_P0079842 Ncapd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079843.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127118454 127120530 - Ncapd2 protein_coding retained_intron MGP_C3HHeJ_T0079844.1 MGP_C3HHeJ_G0030990.1 mouse_genomes_project 6 127119727 127125420 - MGP_C3HHeJ_P0079844 Ncapd2 protein_coding protein_coding MGP_C3HHeJ_T0078448.1 MGP_C3HHeJ_G0030703.1 mouse_genomes_project 6 94004729 94012541 - MGP_C3HHeJ_P0078448 Vmn1r46 protein_coding protein_coding MGP_C3HHeJ_T0078449.1 MGP_C3HHeJ_G0030703.1 mouse_genomes_project 6 94004756 94005686 - MGP_C3HHeJ_P0078449 Vmn1r46 protein_coding protein_coding MGP_C3HHeJ_T0075993.1 MGP_C3HHeJ_G0030161.1 mouse_genomes_project 6 12701006 12787219 + MGP_C3HHeJ_P0075993 Mdfic protein_coding protein_coding MGP_C3HHeJ_T0075994.1 MGP_C3HHeJ_G0030161.1 mouse_genomes_project 6 12701006 12787223 + MGP_C3HHeJ_P0075994 Mdfic protein_coding protein_coding MGP_C3HHeJ_T0075995.1 MGP_C3HHeJ_G0030161.1 mouse_genomes_project 6 12701048 12755434 + MGP_C3HHeJ_P0075995 Mdfic protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0075996.1 MGP_C3HHeJ_G0030161.1 mouse_genomes_project 6 12701066 12757503 + MGP_C3HHeJ_P0075996 Mdfic protein_coding protein_coding MGP_C3HHeJ_T0075997.1 MGP_C3HHeJ_G0030161.1 mouse_genomes_project 6 12701432 12785862 + MGP_C3HHeJ_P0075997 Mdfic protein_coding protein_coding MGP_C3HHeJ_T0075998.1 MGP_C3HHeJ_G0030161.1 mouse_genomes_project 6 12710501 12754548 + MGP_C3HHeJ_P0075998 Mdfic protein_coding protein_coding MGP_C3HHeJ_T0079632.1 MGP_C3HHeJ_G0030958.1 mouse_genomes_project 6 126378597 126400031 - MGP_C3HHeJ_P0079632 protein_coding protein_coding MGP_C3HHeJ_T0015391.1 MGP_C3HHeJ_G0013495.1 mouse_genomes_project 6 124037780 124038074 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002664.1 MGP_C3HHeJ_G0002546.1 mouse_genomes_project 6 39044328 39044604 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0005005.1 MGP_C3HHeJ_G0004264.1 mouse_genomes_project 6 126332554 126334762 - Gm44096 antisense antisense MGP_C3HHeJ_T0076281.1 MGP_C3HHeJ_G0030220.1 mouse_genomes_project 6 26969333 26972113 + MGP_C3HHeJ_P0076281 Atp6v1f protein_coding protein_coding MGP_C3HHeJ_T0076282.1 MGP_C3HHeJ_G0030220.1 mouse_genomes_project 6 26969683 26972113 + MGP_C3HHeJ_P0076282 Atp6v1f protein_coding protein_coding MGP_C3HHeJ_T0076283.1 MGP_C3HHeJ_G0030220.1 mouse_genomes_project 6 26969683 26972113 + MGP_C3HHeJ_P0076283 Atp6v1f protein_coding protein_coding MGP_C3HHeJ_T0075856.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2533719 2845355 + MGP_C3HHeJ_P0075856 Dync1i1 protein_coding protein_coding MGP_C3HHeJ_T0075857.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2533843 2845346 + MGP_C3HHeJ_P0075857 Dync1i1 protein_coding protein_coding MGP_C3HHeJ_T0075858.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2533871 2845355 + MGP_C3HHeJ_P0075858 Dync1i1 protein_coding protein_coding MGP_C3HHeJ_T0075859.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2533892 2845355 + MGP_C3HHeJ_P0075859 Dync1i1 protein_coding protein_coding MGP_C3HHeJ_T0075860.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2533898 2574788 + MGP_C3HHeJ_P0075860 Dync1i1 protein_coding protein_coding MGP_C3HHeJ_T0075861.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2565157 2592636 + MGP_C3HHeJ_P0075861 Dync1i1 protein_coding protein_coding MGP_C3HHeJ_T0075862.1 MGP_C3HHeJ_G0030133.1 mouse_genomes_project 6 2823418 2845103 + Dync1i1 protein_coding retained_intron MGP_C3HHeJ_T0001933.1 MGP_C3HHeJ_G0001855.1 mouse_genomes_project 6 43601167 43603676 + TEC TEC MGP_C3HHeJ_T0076885.1 MGP_C3HHeJ_G0030357.1 mouse_genomes_project 6 40805317 40806271 + MGP_C3HHeJ_P0076885 Olfr38 protein_coding protein_coding MGP_C3HHeJ_T0080220.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137803059 137832344 - MGP_C3HHeJ_P0080220 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080221.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137803059 137832234 - MGP_C3HHeJ_P0080221 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080222.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137803074 137832277 - MGP_C3HHeJ_P0080222 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080223.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137803123 137822146 - MGP_C3HHeJ_P0080223 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080224.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137803128 137832282 - MGP_C3HHeJ_P0080224 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080225.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137804003 137832244 - MGP_C3HHeJ_P0080225 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080226.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137804174 137832234 - MGP_C3HHeJ_P0080226 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080227.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137804215 137822082 - MGP_C3HHeJ_P0080227 Gpr19 protein_coding protein_coding MGP_C3HHeJ_T0080228.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137811209 137832306 - Gpr19 protein_coding processed_transcript MGP_C3HHeJ_T0080229.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137821204 137831506 - Gpr19 protein_coding processed_transcript MGP_C3HHeJ_T0080230.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137821964 137832989 - Gpr19 protein_coding processed_transcript MGP_C3HHeJ_T0080231.1 MGP_C3HHeJ_G0031113.1 mouse_genomes_project 6 137831119 137832344 - Gpr19 protein_coding processed_transcript MGP_C3HHeJ_T0008579.1 MGP_C3HHeJ_G0006929.1 mouse_genomes_project 6 92465448 92466217 - 1810044D09Rik lincRNA lincRNA MGP_C3HHeJ_T0011573.1 MGP_C3HHeJ_G0009706.1 mouse_genomes_project 6 123925670 123925919 - Gm27826 misc_RNA misc_RNA MGP_C3HHeJ_T0000202.1 MGP_C3HHeJ_G0000153.1 mouse_genomes_project 6 117224252 117226525 + MGP_C3HHeJ_P0000202 Igkv1-131 IG_V_gene IG_V_gene MGP_C3HHeJ_T0010696.1 MGP_C3HHeJ_G0008829.1 mouse_genomes_project 6 74918220 74918281 - Mir7661 miRNA miRNA MGP_C3HHeJ_T0078163.1 MGP_C3HHeJ_G0030642.1 mouse_genomes_project 6 82929897 83029536 + MGP_C3HHeJ_P0078163 Shq1 protein_coding protein_coding MGP_C3HHeJ_T0078164.1 MGP_C3HHeJ_G0030642.1 mouse_genomes_project 6 82929897 83034940 + MGP_C3HHeJ_P0078164 Shq1 protein_coding protein_coding MGP_C3HHeJ_T0078165.1 MGP_C3HHeJ_G0030642.1 mouse_genomes_project 6 82929915 83029535 + MGP_C3HHeJ_P0078165 Shq1 protein_coding protein_coding MGP_C3HHeJ_T0078166.1 MGP_C3HHeJ_G0030642.1 mouse_genomes_project 6 82929921 82938217 + Shq1 protein_coding processed_transcript MGP_C3HHeJ_T0004856.1 MGP_C3HHeJ_G0004163.1 mouse_genomes_project 6 31985457 32019851 + Gm14546 antisense antisense MGP_C3HHeJ_T0004863.1 MGP_C3HHeJ_G0004169.1 mouse_genomes_project 6 36991527 37021355 + 4930599N23Rik antisense antisense MGP_C3HHeJ_T0079852.1 MGP_C3HHeJ_G0030993.1 mouse_genomes_project 6 127158480 127166740 - MGP_C3HHeJ_P0079852 Tapbpl protein_coding protein_coding MGP_C3HHeJ_T0080251.1 MGP_C3HHeJ_G0031119.1 mouse_genomes_project 6 138081605 138115156 - MGP_C3HHeJ_P0080251 Hebp1 protein_coding protein_coding MGP_C3HHeJ_T0080252.1 MGP_C3HHeJ_G0031119.1 mouse_genomes_project 6 138098545 138115133 - Hebp1 protein_coding processed_transcript MGP_C3HHeJ_T0080253.1 MGP_C3HHeJ_G0031119.1 mouse_genomes_project 6 138100946 138147845 - Hebp1 protein_coding processed_transcript MGP_C3HHeJ_T0080254.1 MGP_C3HHeJ_G0031119.1 mouse_genomes_project 6 138112517 138115076 - Hebp1 protein_coding retained_intron MGP_C3HHeJ_T0008561.1 MGP_C3HHeJ_G0006916.1 mouse_genomes_project 6 81717236 81724092 - Gm44176 lincRNA lincRNA MGP_C3HHeJ_T0075904.1 MGP_C3HHeJ_G0030146.1 mouse_genomes_project 6 5088895 5432178 + MGP_C3HHeJ_P0075904 Gm45062 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079479.1 MGP_C3HHeJ_G0030912.1 mouse_genomes_project 6 122615903 122632703 + MGP_C3HHeJ_P0079479 Tuba8 protein_coding protein_coding MGP_C3HHeJ_T0079244.1 MGP_C3HHeJ_G0030860.1 mouse_genomes_project 6 112103873 112110328 - MGP_C3HHeJ_P0079244 0610030E20Rik protein_coding protein_coding MGP_C3HHeJ_T0079245.1 MGP_C3HHeJ_G0030860.1 mouse_genomes_project 6 112106445 112110345 - 0610030E20Rik protein_coding retained_intron MGP_C3HHeJ_T0079246.1 MGP_C3HHeJ_G0030860.1 mouse_genomes_project 6 112107044 112110295 - 0610030E20Rik protein_coding retained_intron MGP_C3HHeJ_T0079247.1 MGP_C3HHeJ_G0030860.1 mouse_genomes_project 6 112108486 112110336 - 0610030E20Rik protein_coding retained_intron MGP_C3HHeJ_T0078804.1 MGP_C3HHeJ_G0030774.1 mouse_genomes_project 6 98645679 98648148 + MGP_C3HHeJ_P0078804 Egr4 protein_coding protein_coding MGP_C3HHeJ_T0000301.1 MGP_C3HHeJ_G0000251.1 mouse_genomes_project 6 117127433 117127899 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015135.1 MGP_C3HHeJ_G0013239.1 mouse_genomes_project 6 41324850 41337484 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079862.1 MGP_C3HHeJ_G0030996.1 mouse_genomes_project 6 127244187 127251441 - MGP_C3HHeJ_P0079862 Ltbr protein_coding protein_coding MGP_C3HHeJ_T0079863.1 MGP_C3HHeJ_G0030996.1 mouse_genomes_project 6 127246673 127247127 - Ltbr protein_coding retained_intron MGP_C3HHeJ_T0079864.1 MGP_C3HHeJ_G0030996.1 mouse_genomes_project 6 127250288 127250821 - Ltbr protein_coding retained_intron MGP_C3HHeJ_T0004859.1 MGP_C3HHeJ_G0004165.1 mouse_genomes_project 6 32434917 32443098 - Gm14547 antisense antisense MGP_C3HHeJ_T0076776.1 MGP_C3HHeJ_G0030313.1 mouse_genomes_project 6 38845063 38854519 - MGP_C3HHeJ_P0076776 Moxd2 protein_coding protein_coding MGP_C3HHeJ_T0010686.1 MGP_C3HHeJ_G0008819.1 mouse_genomes_project 6 62146584 62146681 + Gm25193 miRNA miRNA MGP_C3HHeJ_T0015108.1 MGP_C3HHeJ_G0013212.1 mouse_genomes_project 6 27503785 27503992 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078966.1 MGP_C3HHeJ_G0030802.1 mouse_genomes_project 6 100906558 100925969 - MGP_C3HHeJ_P0078966 Mob1a protein_coding protein_coding MGP_C3HHeJ_T0078967.1 MGP_C3HHeJ_G0030802.1 mouse_genomes_project 6 100906633 100925795 - MGP_C3HHeJ_P0078967 Mob1a protein_coding protein_coding MGP_C3HHeJ_T0078968.1 MGP_C3HHeJ_G0030802.1 mouse_genomes_project 6 100917607 100926031 - Mob1a protein_coding processed_transcript MGP_C3HHeJ_T0078969.1 MGP_C3HHeJ_G0030802.1 mouse_genomes_project 6 100919587 100926013 - MGP_C3HHeJ_P0078969 Mob1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015147.1 MGP_C3HHeJ_G0013251.1 mouse_genomes_project 6 46306083 46306957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099543.1 MGP_C3HHeJ_G0037737.1 mouse_genomes_project 6 120768194 120768297 - Gm25205 snRNA snRNA MGP_C3HHeJ_T0008504.1 MGP_C3HHeJ_G0006869.1 mouse_genomes_project 6 48522530 48579779 + Gm3455 lincRNA lincRNA MGP_C3HHeJ_T0080153.1 MGP_C3HHeJ_G0031077.1 mouse_genomes_project 6 134203635 134204725 - MGP_C3HHeJ_P0080153 Tas2r130 protein_coding protein_coding MGP_C3HHeJ_T0002665.1 MGP_C3HHeJ_G0002547.1 mouse_genomes_project 6 39057697 39058099 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0079890.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127672028 127946844 + protein_coding retained_intron MGP_C3HHeJ_T0079891.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127672028 128032128 + MGP_C3HHeJ_P0079891 protein_coding protein_coding MGP_C3HHeJ_T0079892.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127692481 128032128 + MGP_C3HHeJ_P0079892 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079893.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127693331 127777650 + protein_coding processed_transcript MGP_C3HHeJ_T0079894.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127693445 128031516 + MGP_C3HHeJ_P0079894 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079895.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127804864 127891351 + protein_coding processed_transcript MGP_C3HHeJ_T0079896.1 MGP_C3HHeJ_G0031002.1 mouse_genomes_project 6 127804865 128032126 + MGP_C3HHeJ_P0079896 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078094.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74856287 75187018 - MGP_C3HHeJ_P0078094 Itpr1 protein_coding protein_coding MGP_C3HHeJ_T0078095.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74856287 75187124 - MGP_C3HHeJ_P0078095 Itpr1 protein_coding protein_coding MGP_C3HHeJ_T0078096.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74888474 74889416 - Itpr1 protein_coding retained_intron MGP_C3HHeJ_T0078097.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74895218 74899811 - Itpr1 protein_coding retained_intron MGP_C3HHeJ_T0078098.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74932539 74991251 - MGP_C3HHeJ_P0078098 Itpr1 protein_coding protein_coding MGP_C3HHeJ_T0078099.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74935056 74947374 - Itpr1 protein_coding processed_transcript MGP_C3HHeJ_T0078100.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74965346 74991318 - MGP_C3HHeJ_P0078100 Itpr1 protein_coding protein_coding MGP_C3HHeJ_T0078101.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74965391 74990237 - MGP_C3HHeJ_P0078101 Itpr1 protein_coding protein_coding MGP_C3HHeJ_T0078102.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 74989112 74992878 - Itpr1 protein_coding retained_intron MGP_C3HHeJ_T0078103.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 75015117 75147259 - Itpr1 protein_coding retained_intron MGP_C3HHeJ_T0078104.1 MGP_C3HHeJ_G0030628.1 mouse_genomes_project 6 75030082 75051503 - MGP_C3HHeJ_P0078104 Itpr1 protein_coding protein_coding MGP_C3HHeJ_T0099523.1 MGP_C3HHeJ_G0037717.1 mouse_genomes_project 6 70178939 70179045 - Gm22591 snRNA snRNA MGP_C3HHeJ_T0002057.1 MGP_C3HHeJ_G0001978.1 mouse_genomes_project 6 101987710 101991854 + TEC TEC MGP_C3HHeJ_T0005045.1 MGP_C3HHeJ_G0004298.1 mouse_genomes_project 6 147318464 147320335 + Sox5os1 antisense antisense MGP_C3HHeJ_T0015104.1 MGP_C3HHeJ_G0013208.1 mouse_genomes_project 6 24222696 24223438 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011577.1 MGP_C3HHeJ_G0009710.1 mouse_genomes_project 6 144964257 144964568 - Gm23069 misc_RNA misc_RNA MGP_C3HHeJ_T0080175.1 MGP_C3HHeJ_G0031098.1 mouse_genomes_project 6 135694468 135695405 + MGP_C3HHeJ_P0080175 Tas2r125 protein_coding protein_coding MGP_C3HHeJ_T0079347.1 MGP_C3HHeJ_G0030880.1 mouse_genomes_project 6 113614678 113619135 - MGP_C3HHeJ_P0079347 Foxi3 protein_coding protein_coding MGP_C3HHeJ_T0079348.1 MGP_C3HHeJ_G0030880.1 mouse_genomes_project 6 113614681 113619210 - MGP_C3HHeJ_P0079348 Foxi3 protein_coding protein_coding MGP_C3HHeJ_T0008497.1 MGP_C3HHeJ_G0006863.1 mouse_genomes_project 6 46758281 46780052 - Gm44696 lincRNA lincRNA MGP_C3HHeJ_T0008538.1 MGP_C3HHeJ_G0006895.1 mouse_genomes_project 6 63104319 63110797 + 4930540M05Rik lincRNA lincRNA MGP_C3HHeJ_T0002046.1 MGP_C3HHeJ_G0001967.1 mouse_genomes_project 6 97520369 97522339 - TEC TEC MGP_C3HHeJ_T0076906.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41392657 41416394 + MGP_C3HHeJ_P0076906 Arhgef5 protein_coding protein_coding MGP_C3HHeJ_T0076907.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41401584 41416393 + MGP_C3HHeJ_P0076907 Arhgef5 protein_coding protein_coding MGP_C3HHeJ_T0076908.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41404011 41406994 + Arhgef5 protein_coding retained_intron MGP_C3HHeJ_T0076909.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41404120 41414269 + Arhgef5 protein_coding retained_intron MGP_C3HHeJ_T0076910.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41406530 41416390 + Arhgef5 protein_coding retained_intron MGP_C3HHeJ_T0076911.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41408063 41410640 + Arhgef5 protein_coding retained_intron MGP_C3HHeJ_T0076912.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41409687 41416389 + Arhgef5 protein_coding retained_intron MGP_C3HHeJ_T0076913.1 MGP_C3HHeJ_G0030372.1 mouse_genomes_project 6 41409955 41411089 + Arhgef5 protein_coding retained_intron MGP_C3HHeJ_T0001889.1 MGP_C3HHeJ_G0001811.1 mouse_genomes_project 6 14737740 14740658 + TEC TEC MGP_C3HHeJ_T0075946.1 MGP_C3HHeJ_G0030153.1 mouse_genomes_project 6 10008604 10013940 + MGP_C3HHeJ_P0075946 Tmem106b protein_coding protein_coding MGP_C3HHeJ_T0075947.1 MGP_C3HHeJ_G0030153.1 mouse_genomes_project 6 10008661 10010799 + MGP_C3HHeJ_P0075947 Tmem106b protein_coding protein_coding MGP_C3HHeJ_T0075948.1 MGP_C3HHeJ_G0030153.1 mouse_genomes_project 6 10008684 10028137 + MGP_C3HHeJ_P0075948 Tmem106b protein_coding protein_coding MGP_C3HHeJ_T0075949.1 MGP_C3HHeJ_G0030153.1 mouse_genomes_project 6 10008696 10014231 + Tmem106b protein_coding retained_intron MGP_C3HHeJ_T0075950.1 MGP_C3HHeJ_G0030153.1 mouse_genomes_project 6 10008699 10015216 + Tmem106b protein_coding processed_transcript MGP_C3HHeJ_T0075951.1 MGP_C3HHeJ_G0030153.1 mouse_genomes_project 6 10009096 10020501 + MGP_C3HHeJ_P0075951 Tmem106b protein_coding protein_coding MGP_C3HHeJ_T0078362.1 MGP_C3HHeJ_G0030681.1 mouse_genomes_project 6 92416103 92430864 - MGP_C3HHeJ_P0078362 Tmem43 protein_coding protein_coding MGP_C3HHeJ_T0078363.1 MGP_C3HHeJ_G0030681.1 mouse_genomes_project 6 92425426 92430808 - Tmem43 protein_coding retained_intron MGP_C3HHeJ_T0078364.1 MGP_C3HHeJ_G0030681.1 mouse_genomes_project 6 92426309 92427967 - Tmem43 protein_coding processed_transcript MGP_C3HHeJ_T0078365.1 MGP_C3HHeJ_G0030681.1 mouse_genomes_project 6 92426933 92430840 - Tmem43 protein_coding retained_intron MGP_C3HHeJ_T0078366.1 MGP_C3HHeJ_G0030681.1 mouse_genomes_project 6 92430091 92430816 - Tmem43 protein_coding processed_transcript MGP_C3HHeJ_T0015159.1 MGP_C3HHeJ_G0013263.1 mouse_genomes_project 6 47723960 47724525 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077703.1 MGP_C3HHeJ_G0030559.1 mouse_genomes_project 6 66617558 66620104 - MGP_C3HHeJ_P0077703 protein_coding protein_coding MGP_C3HHeJ_T0015125.1 MGP_C3HHeJ_G0013229.1 mouse_genomes_project 6 38474383 38474795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004944.1 MGP_C3HHeJ_G0004227.1 mouse_genomes_project 6 95814327 95817404 + 1700031F10Rik antisense antisense MGP_C3HHeJ_T0004945.1 MGP_C3HHeJ_G0004227.1 mouse_genomes_project 6 95816366 95817402 + 1700031F10Rik antisense antisense MGP_C3HHeJ_T0077314.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53743014 53785708 - MGP_C3HHeJ_P0077314 Crhr2 protein_coding protein_coding MGP_C3HHeJ_T0077315.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53744150 53770950 - MGP_C3HHeJ_P0077315 Crhr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077316.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53744177 53770878 - MGP_C3HHeJ_P0077316 Crhr2 protein_coding protein_coding MGP_C3HHeJ_T0077317.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53744242 53770736 - MGP_C3HHeJ_P0077317 Crhr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0077318.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53744982 53785535 - MGP_C3HHeJ_P0077318 Crhr2 protein_coding protein_coding MGP_C3HHeJ_T0077319.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53745920 53753531 - Crhr2 protein_coding retained_intron MGP_C3HHeJ_T0077320.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53751584 53785710 - Crhr2 protein_coding retained_intron MGP_C3HHeJ_T0077321.1 MGP_C3HHeJ_G0030463.1 mouse_genomes_project 6 53757707 53770736 - Crhr2 protein_coding retained_intron MGP_C3HHeJ_T0008560.1 MGP_C3HHeJ_G0006915.1 mouse_genomes_project 6 77993263 77997101 + lincRNA lincRNA MGP_C3HHeJ_T0079816.1 MGP_C3HHeJ_G0030987.1 mouse_genomes_project 6 127053794 127066454 + MGP_C3HHeJ_P0079816 Nop2 protein_coding protein_coding MGP_C3HHeJ_T0079817.1 MGP_C3HHeJ_G0030987.1 mouse_genomes_project 6 127053932 127056602 + MGP_C3HHeJ_P0079817 Nop2 protein_coding protein_coding MGP_C3HHeJ_T0000191.1 MGP_C3HHeJ_G0000145.1 mouse_genomes_project 6 116936787 116937558 - MGP_C3HHeJ_P0000191 Igkv1-122 IG_V_gene IG_V_gene MGP_C3HHeJ_T0076708.1 MGP_C3HHeJ_G0030294.1 mouse_genomes_project 6 37369135 37475076 - MGP_C3HHeJ_P0076708 Dennd2a protein_coding protein_coding MGP_C3HHeJ_T0076709.1 MGP_C3HHeJ_G0030294.1 mouse_genomes_project 6 37370010 37400071 - Dennd2a protein_coding retained_intron MGP_C3HHeJ_T0076710.1 MGP_C3HHeJ_G0030294.1 mouse_genomes_project 6 37374897 37377018 - Dennd2a protein_coding retained_intron MGP_C3HHeJ_T0076711.1 MGP_C3HHeJ_G0030294.1 mouse_genomes_project 6 37390524 37397361 - Dennd2a protein_coding retained_intron MGP_C3HHeJ_T0076712.1 MGP_C3HHeJ_G0030294.1 mouse_genomes_project 6 37407876 37475076 - MGP_C3HHeJ_P0076712 Dennd2a protein_coding protein_coding MGP_C3HHeJ_T0015113.1 MGP_C3HHeJ_G0013217.1 mouse_genomes_project 6 32521790 32521987 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001883.1 MGP_C3HHeJ_G0001805.1 mouse_genomes_project 6 4195275 4197953 + TEC TEC MGP_C3HHeJ_T0077921.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69624858 69692480 - MGP_C3HHeJ_P0077921 Fancd2 protein_coding protein_coding MGP_C3HHeJ_T0077922.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69625602 69692458 - MGP_C3HHeJ_P0077922 Fancd2 protein_coding protein_coding MGP_C3HHeJ_T0077923.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69635850 69638411 - Fancd2 protein_coding retained_intron MGP_C3HHeJ_T0077924.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69647306 69654279 - MGP_C3HHeJ_P0077924 Fancd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077925.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69660508 69672534 - MGP_C3HHeJ_P0077925 Fancd2 protein_coding protein_coding MGP_C3HHeJ_T0077926.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69670371 69672538 - Fancd2 protein_coding retained_intron MGP_C3HHeJ_T0077927.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69685442 69692458 - Fancd2 protein_coding retained_intron MGP_C3HHeJ_T0077928.1 MGP_C3HHeJ_G0030598.1 mouse_genomes_project 6 69686325 69692458 - Fancd2 protein_coding retained_intron MGP_C3HHeJ_T0076508.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32298888 32486112 + MGP_C3HHeJ_P0076508 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076509.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32298900 32461271 + MGP_C3HHeJ_P0076509 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076510.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32298932 32393714 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0076511.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32298932 32449917 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0076512.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32298952 32486124 + MGP_C3HHeJ_P0076512 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076513.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32298953 32486124 + MGP_C3HHeJ_P0076513 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076514.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32299008 32366879 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0076515.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32391377 32486104 + MGP_C3HHeJ_P0076515 Cald1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0076516.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32417179 32486131 + MGP_C3HHeJ_P0076516 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076517.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32417227 32418492 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0076518.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32417227 32486126 + MGP_C3HHeJ_P0076518 Cald1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076519.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32417371 32484340 + MGP_C3HHeJ_P0076519 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076520.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32453642 32463574 + MGP_C3HHeJ_P0076520 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076521.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32453671 32463484 + MGP_C3HHeJ_P0076521 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076522.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32453697 32463484 + MGP_C3HHeJ_P0076522 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076523.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32454076 32471663 + MGP_C3HHeJ_P0076523 Cald1 protein_coding protein_coding MGP_C3HHeJ_T0076524.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32455459 32461190 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0076525.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32472396 32476390 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0076526.1 MGP_C3HHeJ_G0030257.1 mouse_genomes_project 6 32474513 32476197 + Cald1 protein_coding retained_intron MGP_C3HHeJ_T0099519.1 MGP_C3HHeJ_G0037713.1 mouse_genomes_project 6 62433037 62433139 - Gm24391 snRNA snRNA MGP_C3HHeJ_T0005041.1 MGP_C3HHeJ_G0004294.1 mouse_genomes_project 6 141741943 141761266 + B230110G15Rik antisense antisense MGP_C3HHeJ_T0010722.1 MGP_C3HHeJ_G0008855.1 mouse_genomes_project 6 126616643 126616712 - Mir200c miRNA miRNA MGP_C3HHeJ_T0079604.1 MGP_C3HHeJ_G0030947.1 mouse_genomes_project 6 125463534 125511997 + MGP_C3HHeJ_P0079604 Vmn2r23 protein_coding protein_coding MGP_C3HHeJ_T0076172.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23096081 23176348 - MGP_C3HHeJ_P0076172 Pot1a protein_coding protein_coding MGP_C3HHeJ_T0076173.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23096841 23098425 - Pot1a protein_coding retained_intron MGP_C3HHeJ_T0076174.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23096921 23165129 - MGP_C3HHeJ_P0076174 Pot1a protein_coding protein_coding MGP_C3HHeJ_T0076175.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23101487 23176348 - Pot1a protein_coding retained_intron MGP_C3HHeJ_T0076176.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23111372 23176316 - MGP_C3HHeJ_P0076176 Pot1a protein_coding protein_coding MGP_C3HHeJ_T0076177.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23129579 23176344 - Pot1a protein_coding processed_transcript MGP_C3HHeJ_T0076178.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23155769 23176368 - Pot1a protein_coding retained_intron MGP_C3HHeJ_T0076179.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23165639 23176338 - Pot1a protein_coding retained_intron MGP_C3HHeJ_T0076180.1 MGP_C3HHeJ_G0030200.1 mouse_genomes_project 6 23167429 23168499 - Pot1a protein_coding processed_transcript MGP_C3HHeJ_T0000288.1 MGP_C3HHeJ_G0000238.1 mouse_genomes_project 6 116440944 116441202 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076624.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35943209 36077197 - MGP_C3HHeJ_P0076624 D630045J12Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0076625.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35943211 36077143 - MGP_C3HHeJ_P0076625 D630045J12Rik protein_coding protein_coding MGP_C3HHeJ_T0076626.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35943213 36077228 - MGP_C3HHeJ_P0076626 D630045J12Rik protein_coding protein_coding MGP_C3HHeJ_T0076627.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35946051 35967536 - D630045J12Rik protein_coding retained_intron MGP_C3HHeJ_T0076628.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35946057 35967479 - D630045J12Rik protein_coding retained_intron MGP_C3HHeJ_T0076629.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35957478 36017384 - D630045J12Rik protein_coding retained_intron MGP_C3HHeJ_T0076630.1 MGP_C3HHeJ_G0030278.1 mouse_genomes_project 6 35978279 35990525 - D630045J12Rik protein_coding retained_intron MGP_C3HHeJ_T0076848.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40377802 40379321 + MGP_C3HHeJ_P0076848 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076849.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40377952 40379780 + MGP_C3HHeJ_P0076849 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076850.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378000 40386735 + MGP_C3HHeJ_P0076850 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076851.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378041 40386565 + MGP_C3HHeJ_P0076851 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076852.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378205 40386565 + Zyx protein_coding retained_intron MGP_C3HHeJ_T0076853.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378205 40386565 + MGP_C3HHeJ_P0076853 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076854.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378210 40379937 + Zyx protein_coding processed_transcript MGP_C3HHeJ_T0076855.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378211 40388386 + MGP_C3HHeJ_P0076855 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076856.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40378243 40379237 + MGP_C3HHeJ_P0076856 Zyx protein_coding protein_coding MGP_C3HHeJ_T0076857.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40381650 40384210 + Zyx protein_coding processed_transcript MGP_C3HHeJ_T0076858.1 MGP_C3HHeJ_G0030344.1 mouse_genomes_project 6 40383309 40384434 + Zyx protein_coding processed_transcript MGP_C3HHeJ_T0008557.1 MGP_C3HHeJ_G0006912.1 mouse_genomes_project 6 75772309 75777074 - 4933431M02Rik lincRNA lincRNA MGP_C3HHeJ_T0079378.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118019845 118020406 + Gadd45a protein_coding retained_intron MGP_C3HHeJ_T0079379.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118019896 118022207 + MGP_C3HHeJ_P0079379 Gadd45a protein_coding protein_coding MGP_C3HHeJ_T0079380.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118019925 118020932 + Gadd45a protein_coding retained_intron MGP_C3HHeJ_T0079381.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118019938 118021844 + MGP_C3HHeJ_P0079381 Gadd45a protein_coding protein_coding MGP_C3HHeJ_T0079382.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118020051 118021837 + MGP_C3HHeJ_P0079382 Gadd45a protein_coding protein_coding MGP_C3HHeJ_T0079383.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118020101 118021844 + Gadd45a protein_coding retained_intron MGP_C3HHeJ_T0079384.1 MGP_C3HHeJ_G0030888.1 mouse_genomes_project 6 118020116 118021724 + Gadd45a protein_coding retained_intron MGP_C3HHeJ_T0015351.1 MGP_C3HHeJ_G0013455.1 mouse_genomes_project 6 117780551 117781938 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008654.1 MGP_C3HHeJ_G0006991.1 mouse_genomes_project 6 131063934 131066906 + Gm26656 lincRNA lincRNA MGP_C3HHeJ_T0002053.1 MGP_C3HHeJ_G0001974.1 mouse_genomes_project 6 100821380 100825044 + TEC TEC MGP_C3HHeJ_T0102088.1 MGP_C3HHeJ_G0040053.1 mouse_genomes_project 6 56819669 56819803 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0001877.1 MGP_C3HHeJ_G0001799.1 mouse_genomes_project 6 1712080 1713312 + TEC TEC MGP_C3HHeJ_T0015189.1 MGP_C3HHeJ_G0013293.1 mouse_genomes_project 6 60062922 60063808 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015093.1 MGP_C3HHeJ_G0013197.1 mouse_genomes_project 6 19988782 19989550 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010675.1 MGP_C3HHeJ_G0008808.1 mouse_genomes_project 6 34461646 34461793 + Gm25111 miRNA miRNA MGP_C3HHeJ_T0008510.1 MGP_C3HHeJ_G0006873.1 mouse_genomes_project 6 49792191 49796556 - Gm44447 lincRNA lincRNA MGP_C3HHeJ_T0008473.1 MGP_C3HHeJ_G0006850.1 mouse_genomes_project 6 31870806 31877962 + Gm13855 lincRNA lincRNA MGP_C3HHeJ_T0077012.1 MGP_C3HHeJ_G0030391.1 mouse_genomes_project 6 46958124 46961079 - Rarres2 protein_coding retained_intron MGP_C3HHeJ_T0077013.1 MGP_C3HHeJ_G0030391.1 mouse_genomes_project 6 46958124 46961121 - MGP_C3HHeJ_P0077013 Rarres2 protein_coding protein_coding MGP_C3HHeJ_T0077014.1 MGP_C3HHeJ_G0030391.1 mouse_genomes_project 6 46958124 46961188 - MGP_C3HHeJ_P0077014 Rarres2 protein_coding protein_coding MGP_C3HHeJ_T0077015.1 MGP_C3HHeJ_G0030391.1 mouse_genomes_project 6 46958124 46961220 - MGP_C3HHeJ_P0077015 Rarres2 protein_coding protein_coding MGP_C3HHeJ_T0077016.1 MGP_C3HHeJ_G0030391.1 mouse_genomes_project 6 46958138 46961222 - MGP_C3HHeJ_P0077016 Rarres2 protein_coding protein_coding MGP_C3HHeJ_T0075853.1 MGP_C3HHeJ_G0030132.1 mouse_genomes_project 6 2282129 2296610 - MGP_C3HHeJ_P0075853 Pdk4 protein_coding protein_coding MGP_C3HHeJ_T0075854.1 MGP_C3HHeJ_G0030132.1 mouse_genomes_project 6 2290990 2296562 - MGP_C3HHeJ_P0075854 Pdk4 protein_coding protein_coding MGP_C3HHeJ_T0075855.1 MGP_C3HHeJ_G0030132.1 mouse_genomes_project 6 2294262 2296576 - Pdk4 protein_coding retained_intron MGP_C3HHeJ_T0076004.1 MGP_C3HHeJ_G0030163.1 mouse_genomes_project 6 14054078 14094658 + MGP_C3HHeJ_P0076004 Tes protein_coding protein_coding MGP_C3HHeJ_T0076005.1 MGP_C3HHeJ_G0030163.1 mouse_genomes_project 6 14054089 14057879 + Tes protein_coding retained_intron MGP_C3HHeJ_T0076006.1 MGP_C3HHeJ_G0030163.1 mouse_genomes_project 6 14054097 14086223 + MGP_C3HHeJ_P0076006 Tes protein_coding protein_coding MGP_C3HHeJ_T0076007.1 MGP_C3HHeJ_G0030163.1 mouse_genomes_project 6 14054121 14076926 + Tes protein_coding processed_transcript MGP_C3HHeJ_T0076008.1 MGP_C3HHeJ_G0030163.1 mouse_genomes_project 6 14054153 14094663 + MGP_C3HHeJ_P0076008 Tes protein_coding protein_coding MGP_C3HHeJ_T0079329.1 MGP_C3HHeJ_G0030874.1 mouse_genomes_project 6 113176287 113180358 - Cd8a protein_coding retained_intron MGP_C3HHeJ_T0079330.1 MGP_C3HHeJ_G0030874.1 mouse_genomes_project 6 113176983 113180353 - MGP_C3HHeJ_P0079330 Cd8a protein_coding protein_coding MGP_C3HHeJ_T0008674.1 MGP_C3HHeJ_G0007001.1 mouse_genomes_project 6 142499211 142506200 - 4922502N22Rik lincRNA lincRNA MGP_C3HHeJ_T0004845.1 MGP_C3HHeJ_G0004153.1 mouse_genomes_project 6 26818455 26818864 - Gm17172 antisense antisense MGP_C3HHeJ_T0008609.1 MGP_C3HHeJ_G0006952.1 mouse_genomes_project 6 99936535 99999220 - Gm44127 lincRNA lincRNA MGP_C3HHeJ_T0015096.1 MGP_C3HHeJ_G0013200.1 mouse_genomes_project 6 20436894 20447377 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015052.1 MGP_C3HHeJ_G0013156.1 mouse_genomes_project 6 3550117 3551182 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002019.1 MGP_C3HHeJ_G0001940.1 mouse_genomes_project 6 93545710 93548261 - TEC TEC MGP_C3HHeJ_T0077149.1 MGP_C3HHeJ_G0030424.1 mouse_genomes_project 6 49051273 49055249 - MGP_C3HHeJ_P0077149 Cycs protein_coding protein_coding MGP_C3HHeJ_T0077151.1 MGP_C3HHeJ_G0030424.1 mouse_genomes_project 6 49053947 49054660 - Cycs protein_coding retained_intron MGP_C3HHeJ_T0078167.1 MGP_C3HHeJ_G0030643.1 mouse_genomes_project 6 83332006 83393469 + MGP_C3HHeJ_P0078167 Rybp protein_coding protein_coding MGP_C3HHeJ_T0078168.1 MGP_C3HHeJ_G0030643.1 mouse_genomes_project 6 83333689 83388397 + Rybp protein_coding retained_intron MGP_C3HHeJ_T0078169.1 MGP_C3HHeJ_G0030643.1 mouse_genomes_project 6 83388359 83389480 + Rybp protein_coding retained_intron MGP_C3HHeJ_T0015354.1 MGP_C3HHeJ_G0013458.1 mouse_genomes_project 6 118041213 118041508 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080019.1 MGP_C3HHeJ_G0031031.1 mouse_genomes_project 6 130660704 130664747 - BC048546 protein_coding retained_intron MGP_C3HHeJ_T0080020.1 MGP_C3HHeJ_G0031031.1 mouse_genomes_project 6 130660710 130704752 - MGP_C3HHeJ_P0080020 BC048546 protein_coding protein_coding MGP_C3HHeJ_T0080021.1 MGP_C3HHeJ_G0031031.1 mouse_genomes_project 6 130669747 130674563 - BC048546 protein_coding retained_intron MGP_C3HHeJ_T0080022.1 MGP_C3HHeJ_G0031031.1 mouse_genomes_project 6 130680289 130681520 - BC048546 protein_coding retained_intron MGP_C3HHeJ_T0080023.1 MGP_C3HHeJ_G0031031.1 mouse_genomes_project 6 130696267 130699883 - BC048546 protein_coding retained_intron MGP_C3HHeJ_T0008577.1 MGP_C3HHeJ_G0006927.1 mouse_genomes_project 6 88799167 88807947 - 4930511E03Rik lincRNA lincRNA MGP_C3HHeJ_T0075785.1 MGP_C3HHeJ_G0030119.1 mouse_genomes_project 6 697754 702341 - MGP_C3HHeJ_P0075785 Tfpi2 protein_coding protein_coding MGP_C3HHeJ_T0075786.1 MGP_C3HHeJ_G0030119.1 mouse_genomes_project 6 699918 723921 - MGP_C3HHeJ_P0075786 Tfpi2 protein_coding protein_coding MGP_C3HHeJ_T0102094.1 MGP_C3HHeJ_G0040059.1 mouse_genomes_project 6 57115009 57115935 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015437.1 MGP_C3HHeJ_G0013541.1 mouse_genomes_project 6 134719755 134720236 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076408.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28231372 28272590 - MGP_C3HHeJ_P0076408 Cep41 protein_coding protein_coding MGP_C3HHeJ_T0076409.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28231374 28272534 - MGP_C3HHeJ_P0076409 Cep41 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076410.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28232293 28272536 - MGP_C3HHeJ_P0076410 Cep41 protein_coding protein_coding MGP_C3HHeJ_T0076411.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28232294 28247637 - Cep41 protein_coding processed_transcript MGP_C3HHeJ_T0076412.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28233447 28234725 - Cep41 protein_coding retained_intron MGP_C3HHeJ_T0076413.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28236297 28239651 - Cep41 protein_coding retained_intron MGP_C3HHeJ_T0076414.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28239263 28271929 - MGP_C3HHeJ_P0076414 Cep41 protein_coding protein_coding MGP_C3HHeJ_T0076415.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28244309 28272517 - MGP_C3HHeJ_P0076415 Cep41 protein_coding protein_coding MGP_C3HHeJ_T0076416.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28244595 28258815 - MGP_C3HHeJ_P0076416 Cep41 protein_coding protein_coding MGP_C3HHeJ_T0076417.1 MGP_C3HHeJ_G0030239.1 mouse_genomes_project 6 28257369 28272541 - MGP_C3HHeJ_P0076417 Cep41 protein_coding protein_coding MGP_C3HHeJ_T0079734.1 MGP_C3HHeJ_G0030975.1 mouse_genomes_project 6 126758667 126765063 - MGP_C3HHeJ_P0079734 Gpr162 protein_coding protein_coding MGP_C3HHeJ_T0079735.1 MGP_C3HHeJ_G0030975.1 mouse_genomes_project 6 126758670 126764858 - Gpr162 protein_coding retained_intron MGP_C3HHeJ_T0079736.1 MGP_C3HHeJ_G0030975.1 mouse_genomes_project 6 126758671 126765129 - MGP_C3HHeJ_P0079736 Gpr162 protein_coding protein_coding MGP_C3HHeJ_T0079737.1 MGP_C3HHeJ_G0030975.1 mouse_genomes_project 6 126761954 126764858 - Gpr162 protein_coding processed_transcript MGP_C3HHeJ_T0015458.1 MGP_C3HHeJ_G0013562.1 mouse_genomes_project 6 143235699 143236113 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077605.1 MGP_C3HHeJ_G0030539.1 mouse_genomes_project 6 63815994 63859521 - MGP_C3HHeJ_P0077605 Dcp1b protein_coding protein_coding MGP_C3HHeJ_T0077606.1 MGP_C3HHeJ_G0030539.1 mouse_genomes_project 6 63815996 63820069 - Dcp1b protein_coding retained_intron MGP_C3HHeJ_T0077607.1 MGP_C3HHeJ_G0030539.1 mouse_genomes_project 6 63817406 63841426 - Dcp1b protein_coding retained_intron MGP_C3HHeJ_T0077608.1 MGP_C3HHeJ_G0030539.1 mouse_genomes_project 6 63817427 63859486 - MGP_C3HHeJ_P0077608 Dcp1b protein_coding protein_coding MGP_C3HHeJ_T0077609.1 MGP_C3HHeJ_G0030539.1 mouse_genomes_project 6 63822757 63832335 - Dcp1b protein_coding retained_intron MGP_C3HHeJ_T0076194.1 MGP_C3HHeJ_G0030203.1 mouse_genomes_project 6 25850271 25855907 - MGP_C3HHeJ_P0076194 Gcc1 protein_coding protein_coding MGP_C3HHeJ_T0076195.1 MGP_C3HHeJ_G0030203.1 mouse_genomes_project 6 25852009 25862952 - MGP_C3HHeJ_P0076195 Gcc1 protein_coding protein_coding MGP_C3HHeJ_T0076196.1 MGP_C3HHeJ_G0030203.1 mouse_genomes_project 6 25853842 25855041 - MGP_C3HHeJ_P0076196 Gcc1 protein_coding protein_coding MGP_C3HHeJ_T0076197.1 MGP_C3HHeJ_G0030203.1 mouse_genomes_project 6 25855462 25858778 - MGP_C3HHeJ_P0076197 Gcc1 protein_coding protein_coding MGP_C3HHeJ_T0002118.1 MGP_C3HHeJ_G0002039.1 mouse_genomes_project 6 136984555 136986384 + TEC TEC MGP_C3HHeJ_T0077390.1 MGP_C3HHeJ_G0030487.1 mouse_genomes_project 6 56019969 56020872 + MGP_C3HHeJ_P0077390 Vmn1r13 protein_coding protein_coding MGP_C3HHeJ_T0015236.1 MGP_C3HHeJ_G0013340.1 mouse_genomes_project 6 76086979 76087205 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076246.1 MGP_C3HHeJ_G0030214.1 mouse_genomes_project 6 26772023 26780354 + MGP_C3HHeJ_P0076246 Fam71f2 protein_coding protein_coding MGP_C3HHeJ_T0076247.1 MGP_C3HHeJ_G0030214.1 mouse_genomes_project 6 26773571 26783145 + MGP_C3HHeJ_P0076247 Fam71f2 protein_coding protein_coding MGP_C3HHeJ_T0076248.1 MGP_C3HHeJ_G0030214.1 mouse_genomes_project 6 26773573 26783140 + MGP_C3HHeJ_P0076248 Fam71f2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100806.1 MGP_C3HHeJ_G0039000.1 mouse_genomes_project 6 148153560 148153693 - Gm22792 snoRNA snoRNA MGP_C3HHeJ_T0008568.1 MGP_C3HHeJ_G0006921.1 mouse_genomes_project 6 83106889 83108287 - Gm44107 lincRNA lincRNA MGP_C3HHeJ_T0078798.1 MGP_C3HHeJ_G0030773.1 mouse_genomes_project 6 98387904 98389706 + MGP_C3HHeJ_P0078798 protein_coding protein_coding MGP_C3HHeJ_T0015366.1 MGP_C3HHeJ_G0013470.1 mouse_genomes_project 6 119405851 119406238 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077086.1 MGP_C3HHeJ_G0030411.1 mouse_genomes_project 6 47384102 47387885 + MGP_C3HHeJ_P0077086 Doxl2 protein_coding protein_coding MGP_C3HHeJ_T0077087.1 MGP_C3HHeJ_G0030411.1 mouse_genomes_project 6 47384213 47387886 + MGP_C3HHeJ_P0077087 Doxl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077088.1 MGP_C3HHeJ_G0030411.1 mouse_genomes_project 6 47386373 47387883 + Doxl2 protein_coding retained_intron MGP_C3HHeJ_T0015426.1 MGP_C3HHeJ_G0013530.1 mouse_genomes_project 6 131208710 131209818 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004908.1 MGP_C3HHeJ_G0004205.1 mouse_genomes_project 6 69952938 69954032 + Gm16161 antisense antisense MGP_C3HHeJ_T0078001.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69904846 69922807 - MGP_C3HHeJ_P0078001 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078002.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69904849 69922862 - MGP_C3HHeJ_P0078002 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078003.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69904865 69922775 - MGP_C3HHeJ_P0078003 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078004.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69904990 69922570 - MGP_C3HHeJ_P0078004 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078005.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69904993 69922807 - MGP_C3HHeJ_P0078005 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078006.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69905012 69909445 - Brpf1 protein_coding retained_intron MGP_C3HHeJ_T0078007.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69905012 69922833 - MGP_C3HHeJ_P0078007 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078008.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69905091 69922686 - MGP_C3HHeJ_P0078008 Brpf1 protein_coding protein_coding MGP_C3HHeJ_T0078009.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69907408 69909603 - Brpf1 protein_coding retained_intron MGP_C3HHeJ_T0078010.1 MGP_C3HHeJ_G0030612.1 mouse_genomes_project 6 69911528 69912824 - Brpf1 protein_coding retained_intron MGP_C3HHeJ_T0008572.1 MGP_C3HHeJ_G0006924.1 mouse_genomes_project 6 83737774 83750220 + Gm43067 lincRNA lincRNA MGP_C3HHeJ_T0079727.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126739683 126757976 - MGP_C3HHeJ_P0079727 P3h3 protein_coding protein_coding MGP_C3HHeJ_T0079728.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126739800 126757953 - MGP_C3HHeJ_P0079728 P3h3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079729.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126740088 126741206 - P3h3 protein_coding retained_intron MGP_C3HHeJ_T0079730.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126745455 126751143 - P3h3 protein_coding retained_intron MGP_C3HHeJ_T0079731.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126746103 126755070 - P3h3 protein_coding retained_intron MGP_C3HHeJ_T0079732.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126746145 126754973 - P3h3 protein_coding retained_intron MGP_C3HHeJ_T0079733.1 MGP_C3HHeJ_G0030974.1 mouse_genomes_project 6 126754541 126755316 - P3h3 protein_coding retained_intron MGP_C3HHeJ_T0080123.1 MGP_C3HHeJ_G0031066.1 mouse_genomes_project 6 132284718 132299123 - MGP_C3HHeJ_P0080123 protein_coding protein_coding MGP_C3HHeJ_T0079674.1 MGP_C3HHeJ_G0030965.1 mouse_genomes_project 6 126639817 126656647 - MGP_C3HHeJ_P0079674 Atn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000149.1 MGP_C3HHeJ_G0000114.1 mouse_genomes_project 6 114745175 114745737 + MGP_C3HHeJ_P0000149 Igkv5-37 IG_V_gene IG_V_gene MGP_C3HHeJ_T0078830.1 MGP_C3HHeJ_G0030779.1 mouse_genomes_project 6 98735615 98741437 - MGP_C3HHeJ_P0078830 Noto protein_coding protein_coding MGP_C3HHeJ_T0078831.1 MGP_C3HHeJ_G0030779.1 mouse_genomes_project 6 98736207 98741255 - MGP_C3HHeJ_P0078831 Noto protein_coding protein_coding MGP_C3HHeJ_T0079994.1 MGP_C3HHeJ_G0031026.1 mouse_genomes_project 6 130474421 130506729 + MGP_C3HHeJ_P0079994 Gm44596 protein_coding protein_coding MGP_C3HHeJ_T0079002.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101106881 101122123 - MGP_C3HHeJ_P0079002 Rtkn protein_coding unknown_likely_coding MGP_C3HHeJ_T0079003.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101106886 101123188 - MGP_C3HHeJ_P0079003 Rtkn protein_coding protein_coding MGP_C3HHeJ_T0079004.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101106886 101123209 - MGP_C3HHeJ_P0079004 Rtkn protein_coding protein_coding MGP_C3HHeJ_T0079005.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101106886 101124486 - MGP_C3HHeJ_P0079005 Rtkn protein_coding protein_coding MGP_C3HHeJ_T0079006.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101107257 101108711 - Rtkn protein_coding retained_intron MGP_C3HHeJ_T0079007.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101109225 101111630 - Rtkn protein_coding retained_intron MGP_C3HHeJ_T0079008.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101109907 101124835 - MGP_C3HHeJ_P0079008 Rtkn protein_coding protein_coding MGP_C3HHeJ_T0079009.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101111311 101117072 - MGP_C3HHeJ_P0079009 Rtkn protein_coding protein_coding MGP_C3HHeJ_T0079010.1 MGP_C3HHeJ_G0030808.1 mouse_genomes_project 6 101111789 101116900 - MGP_C3HHeJ_P0079010 Rtkn protein_coding protein_coding MGP_C3HHeJ_T0004841.1 MGP_C3HHeJ_G0004150.1 mouse_genomes_project 6 15473075 15476277 + Gm15594 antisense antisense MGP_C3HHeJ_T0078751.1 MGP_C3HHeJ_G0030760.1 mouse_genomes_project 6 97855903 97936259 - MGP_C3HHeJ_P0078751 Tgfa protein_coding protein_coding MGP_C3HHeJ_T0078752.1 MGP_C3HHeJ_G0030760.1 mouse_genomes_project 6 97859407 97919667 - Tgfa protein_coding processed_transcript MGP_C3HHeJ_T0078753.1 MGP_C3HHeJ_G0030760.1 mouse_genomes_project 6 97859597 97936092 - MGP_C3HHeJ_P0078753 Tgfa protein_coding protein_coding MGP_C3HHeJ_T0078754.1 MGP_C3HHeJ_G0030760.1 mouse_genomes_project 6 97921338 97936231 - Tgfa protein_coding processed_transcript MGP_C3HHeJ_T0015378.1 MGP_C3HHeJ_G0013482.1 mouse_genomes_project 6 120193257 120194146 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076791.1 MGP_C3HHeJ_G0030326.1 mouse_genomes_project 6 39639626 39654735 + MGP_C3HHeJ_P0076791 Ephb6 protein_coding protein_coding MGP_C3HHeJ_T0076792.1 MGP_C3HHeJ_G0030326.1 mouse_genomes_project 6 39647442 39648756 + Ephb6 protein_coding processed_transcript MGP_C3HHeJ_T0076793.1 MGP_C3HHeJ_G0030326.1 mouse_genomes_project 6 39648836 39650983 + MGP_C3HHeJ_P0076793 Ephb6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076794.1 MGP_C3HHeJ_G0030326.1 mouse_genomes_project 6 39654168 39654733 + MGP_C3HHeJ_P0076794 Ephb6 protein_coding protein_coding MGP_C3HHeJ_T0002527.1 MGP_C3HHeJ_G0002438.1 mouse_genomes_project 6 39566289 39566342 + MGP_C3HHeJ_P0002527 Trbj1-6 TR_J_gene TR_J_gene MGP_C3HHeJ_T0004938.1 MGP_C3HHeJ_G0004222.1 mouse_genomes_project 6 94658570 94681722 - Gm26811 antisense antisense MGP_C3HHeJ_T0002105.1 MGP_C3HHeJ_G0002026.1 mouse_genomes_project 6 129549525 129551538 + TEC TEC MGP_C3HHeJ_T0077800.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67473014 67522195 + Raf1 protein_coding retained_intron MGP_C3HHeJ_T0077801.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67473014 67533891 + MGP_C3HHeJ_P0077801 Raf1 protein_coding protein_coding MGP_C3HHeJ_T0077802.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67473686 67533891 + MGP_C3HHeJ_P0077802 Raf1 protein_coding protein_coding MGP_C3HHeJ_T0077803.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67517771 67534393 + Raf1 protein_coding retained_intron MGP_C3HHeJ_T0077804.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67519399 67528929 + MGP_C3HHeJ_P0077804 Raf1 protein_coding protein_coding MGP_C3HHeJ_T0077805.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67521668 67532193 + Raf1 protein_coding retained_intron MGP_C3HHeJ_T0077806.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67525274 67530632 + Raf1 protein_coding retained_intron MGP_C3HHeJ_T0077807.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67525312 67530642 + Raf1 protein_coding retained_intron MGP_C3HHeJ_T0077808.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67528907 67532864 + MGP_C3HHeJ_P0077808 Raf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077810.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67530632 67533863 + MGP_C3HHeJ_P0077810 Raf1 protein_coding protein_coding MGP_C3HHeJ_T0077811.1 MGP_C3HHeJ_G0030576.1 mouse_genomes_project 6 67532139 67533219 + Raf1 protein_coding retained_intron MGP_C3HHeJ_T0015303.1 MGP_C3HHeJ_G0013407.1 mouse_genomes_project 6 102883328 102883781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000277.1 MGP_C3HHeJ_G0000227.1 mouse_genomes_project 6 115507757 115508233 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015202.1 MGP_C3HHeJ_G0013306.1 mouse_genomes_project 6 65620381 65620802 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008439.1 MGP_C3HHeJ_G0006827.1 mouse_genomes_project 6 19209799 19294993 - Gm26719 lincRNA lincRNA MGP_C3HHeJ_T0008644.1 MGP_C3HHeJ_G0006981.1 mouse_genomes_project 6 128344431 128348647 + Gm29009 lincRNA lincRNA MGP_C3HHeJ_T0015267.1 MGP_C3HHeJ_G0013371.1 mouse_genomes_project 6 89354333 89354749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008584.1 MGP_C3HHeJ_G0006933.1 mouse_genomes_project 6 93459097 93460318 - Gm44421 lincRNA lincRNA MGP_C3HHeJ_T0001974.1 MGP_C3HHeJ_G0001895.1 mouse_genomes_project 6 69523001 69523539 - TEC TEC MGP_C3HHeJ_T0005054.1 MGP_C3HHeJ_G0004306.1 mouse_genomes_project 6 148814755 148817883 + Gm15499 antisense antisense MGP_C3HHeJ_T0015254.1 MGP_C3HHeJ_G0013358.1 mouse_genomes_project 6 83795340 83795947 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080112.1 MGP_C3HHeJ_G0031060.1 mouse_genomes_project 6 131994045 132009865 - MGP_C3HHeJ_P0080112 Klri2 protein_coding protein_coding MGP_C3HHeJ_T0011578.1 MGP_C3HHeJ_G0009711.1 mouse_genomes_project 6 145172041 145172257 - Gm22036 misc_RNA misc_RNA MGP_C3HHeJ_T0000292.1 MGP_C3HHeJ_G0000242.1 mouse_genomes_project 6 116587380 116587845 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076808.1 MGP_C3HHeJ_G0030332.1 mouse_genomes_project 6 39891862 39896393 + MGP_C3HHeJ_P0076808 Pip protein_coding protein_coding MGP_C3HHeJ_T0076809.1 MGP_C3HHeJ_G0030332.1 mouse_genomes_project 6 39891895 39896285 + MGP_C3HHeJ_P0076809 Pip protein_coding protein_coding MGP_C3HHeJ_T0076810.1 MGP_C3HHeJ_G0030332.1 mouse_genomes_project 6 39891912 39895912 + MGP_C3HHeJ_P0076810 Pip protein_coding protein_coding MGP_C3HHeJ_T0010666.1 MGP_C3HHeJ_G0008799.1 mouse_genomes_project 6 26897853 26897996 - Gm44354 miRNA miRNA MGP_C3HHeJ_T0015118.1 MGP_C3HHeJ_G0013222.1 mouse_genomes_project 6 35490053 35491010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102084.1 MGP_C3HHeJ_G0040049.1 mouse_genomes_project 6 55997694 55998532 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015115.1 MGP_C3HHeJ_G0013219.1 mouse_genomes_project 6 34339992 34340197 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018046.1 MGP_C3HHeJ_G0015394.1 mouse_genomes_project 6 52884237 53048716 - 9130019P16Rik processed_transcript antisense MGP_C3HHeJ_T0018047.1 MGP_C3HHeJ_G0015394.1 mouse_genomes_project 6 52916747 52942810 - 9130019P16Rik processed_transcript lincRNA MGP_C3HHeJ_T0018048.1 MGP_C3HHeJ_G0015394.1 mouse_genomes_project 6 53041187 53048050 - 9130019P16Rik processed_transcript lincRNA MGP_C3HHeJ_T0004925.1 MGP_C3HHeJ_G0004214.1 mouse_genomes_project 6 83907210 83913906 - Gm26748 antisense antisense MGP_C3HHeJ_T0102079.1 MGP_C3HHeJ_G0040044.1 mouse_genomes_project 6 40983810 40984124 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0077524.1 MGP_C3HHeJ_G0030528.1 mouse_genomes_project 6 62680948 62682017 - MGP_C3HHeJ_P0077524 D330020A13Rik protein_coding protein_coding MGP_C3HHeJ_T0076870.1 MGP_C3HHeJ_G0030352.1 mouse_genomes_project 6 40560391 40561345 - MGP_C3HHeJ_P0076870 Olfr455 protein_coding protein_coding MGP_C3HHeJ_T0005561.1 MGP_C3HHeJ_G0004673.1 mouse_genomes_project 6 97248166 97249208 + 2610306M01Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0008641.1 MGP_C3HHeJ_G0006978.1 mouse_genomes_project 6 126192989 126194194 - 1700027F06Rik lincRNA lincRNA MGP_C3HHeJ_T0076783.1 MGP_C3HHeJ_G0030318.1 mouse_genomes_project 6 38969204 38974566 - MGP_C3HHeJ_P0076783 protein_coding protein_coding MGP_C3HHeJ_T0008528.1 MGP_C3HHeJ_G0006886.1 mouse_genomes_project 6 54058575 54073860 + 6430584L05Rik lincRNA lincRNA MGP_C3HHeJ_T0079901.1 MGP_C3HHeJ_G0031005.1 mouse_genomes_project 6 128660455 128664854 - MGP_C3HHeJ_P0079901 Kcna1 protein_coding protein_coding MGP_C3HHeJ_T0079902.1 MGP_C3HHeJ_G0031005.1 mouse_genomes_project 6 128661722 128664871 - MGP_C3HHeJ_P0079902 Kcna1 protein_coding protein_coding MGP_C3HHeJ_T0079903.1 MGP_C3HHeJ_G0031005.1 mouse_genomes_project 6 128663832 128666441 - Kcna1 protein_coding processed_transcript MGP_C3HHeJ_T0080480.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145605690 145641934 - MGP_C3HHeJ_P0080480 Recql protein_coding protein_coding MGP_C3HHeJ_T0080482.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145612254 145641972 - MGP_C3HHeJ_P0080482 Recql protein_coding protein_coding MGP_C3HHeJ_T0080483.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145612258 145622097 - MGP_C3HHeJ_P0080483 Recql protein_coding protein_coding MGP_C3HHeJ_T0080484.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145613167 145618970 - Recql protein_coding processed_transcript MGP_C3HHeJ_T0080485.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145616683 145641985 - MGP_C3HHeJ_P0080485 Recql protein_coding protein_coding MGP_C3HHeJ_T0080486.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145617428 145618882 - MGP_C3HHeJ_P0080486 Recql protein_coding protein_coding MGP_C3HHeJ_T0080487.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145618065 145619525 - Recql protein_coding retained_intron MGP_C3HHeJ_T0080488.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145619928 145623872 - Recql protein_coding processed_transcript MGP_C3HHeJ_T0080489.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145622626 145623038 - Recql protein_coding retained_intron MGP_C3HHeJ_T0080490.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145630127 145641907 - MGP_C3HHeJ_P0080490 Recql protein_coding protein_coding MGP_C3HHeJ_T0080491.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145630127 145641872 - MGP_C3HHeJ_P0080491 Recql protein_coding protein_coding MGP_C3HHeJ_T0080492.1 MGP_C3HHeJ_G0031166.1 mouse_genomes_project 6 145632226 145641980 - MGP_C3HHeJ_P0080492 Recql protein_coding protein_coding MGP_C3HHeJ_T0077527.1 MGP_C3HHeJ_G0030530.1 mouse_genomes_project 6 62780679 62894678 - MGP_C3HHeJ_P0077527 Ninj2 protein_coding protein_coding MGP_C3HHeJ_T0077528.1 MGP_C3HHeJ_G0030530.1 mouse_genomes_project 6 62780684 62787196 - MGP_C3HHeJ_P0077528 Ninj2 protein_coding protein_coding MGP_C3HHeJ_T0015355.1 MGP_C3HHeJ_G0013459.1 mouse_genomes_project 6 118051807 118052194 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002094.1 MGP_C3HHeJ_G0002015.1 mouse_genomes_project 6 113457587 113458493 + TEC TEC MGP_C3HHeJ_T0004988.1 MGP_C3HHeJ_G0004250.1 mouse_genomes_project 6 111731935 111737842 - Gm15402 antisense antisense MGP_C3HHeJ_T0102139.1 MGP_C3HHeJ_G0040103.1 mouse_genomes_project 6 135883968 135884910 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079074.1 MGP_C3HHeJ_G0030821.1 mouse_genomes_project 6 101211289 101229513 - MGP_C3HHeJ_P0079074 Loxl3 protein_coding protein_coding MGP_C3HHeJ_T0079075.1 MGP_C3HHeJ_G0030821.1 mouse_genomes_project 6 101211289 101229513 - MGP_C3HHeJ_P0079075 Loxl3 protein_coding protein_coding MGP_C3HHeJ_T0079076.1 MGP_C3HHeJ_G0030821.1 mouse_genomes_project 6 101213170 101213970 - Loxl3 protein_coding retained_intron MGP_C3HHeJ_T0079077.1 MGP_C3HHeJ_G0030821.1 mouse_genomes_project 6 101218598 101225286 - Loxl3 protein_coding processed_transcript MGP_C3HHeJ_T0079078.1 MGP_C3HHeJ_G0030821.1 mouse_genomes_project 6 101226130 101229513 - Loxl3 protein_coding processed_transcript MGP_C3HHeJ_T0077020.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985188 46990395 + MGP_C3HHeJ_P0077020 Repin1 protein_coding protein_coding MGP_C3HHeJ_T0077021.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985188 46990395 + MGP_C3HHeJ_P0077021 Repin1 protein_coding protein_coding MGP_C3HHeJ_T0077022.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985188 46988711 + MGP_C3HHeJ_P0077022 Repin1 protein_coding protein_coding MGP_C3HHeJ_T0077023.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985196 46990396 + MGP_C3HHeJ_P0077023 Repin1 protein_coding protein_coding MGP_C3HHeJ_T0077024.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985205 46990395 + MGP_C3HHeJ_P0077024 Repin1 protein_coding protein_coding MGP_C3HHeJ_T0077025.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985245 46986637 + Repin1 protein_coding retained_intron MGP_C3HHeJ_T0077028.1 MGP_C3HHeJ_G0030394.1 mouse_genomes_project 6 46985622 46987947 + Repin1 protein_coding retained_intron MGP_C3HHeJ_T0015075.1 MGP_C3HHeJ_G0013179.1 mouse_genomes_project 6 13088884 13089158 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077019.1 MGP_C3HHeJ_G0030393.1 mouse_genomes_project 6 46980964 47003726 + MGP_C3HHeJ_P0077019 Gm45021 protein_coding protein_coding MGP_C3HHeJ_T0018023.1 MGP_C3HHeJ_G0015387.1 mouse_genomes_project 6 37440230 37454020 + 8030453O22Rik processed_transcript antisense MGP_C3HHeJ_T0018024.1 MGP_C3HHeJ_G0015387.1 mouse_genomes_project 6 37440239 37457942 + 8030453O22Rik processed_transcript antisense MGP_C3HHeJ_T0018025.1 MGP_C3HHeJ_G0015387.1 mouse_genomes_project 6 37440243 37440992 + 8030453O22Rik processed_transcript retained_intron MGP_C3HHeJ_T0099499.1 MGP_C3HHeJ_G0037693.1 mouse_genomes_project 6 3748076 3748238 - Gm22155 snRNA snRNA MGP_C3HHeJ_T0080129.1 MGP_C3HHeJ_G0031070.1 mouse_genomes_project 6 132571488 132584876 - MGP_C3HHeJ_P0080129 protein_coding protein_coding MGP_C3HHeJ_T0002100.1 MGP_C3HHeJ_G0002021.1 mouse_genomes_project 6 126615968 126616266 - TEC TEC MGP_C3HHeJ_T0079583.1 MGP_C3HHeJ_G0030938.1 mouse_genomes_project 6 124757534 124778371 + MGP_C3HHeJ_P0079583 Clec4a2 protein_coding protein_coding MGP_C3HHeJ_T0079584.1 MGP_C3HHeJ_G0030938.1 mouse_genomes_project 6 124777389 124782677 + MGP_C3HHeJ_P0079584 Clec4a2 protein_coding protein_coding MGP_C3HHeJ_T0079585.1 MGP_C3HHeJ_G0030938.1 mouse_genomes_project 6 124777391 124790079 + MGP_C3HHeJ_P0079585 Clec4a2 protein_coding protein_coding MGP_C3HHeJ_T0079586.1 MGP_C3HHeJ_G0030938.1 mouse_genomes_project 6 124778017 124791528 + MGP_C3HHeJ_P0079586 Clec4a2 protein_coding protein_coding MGP_C3HHeJ_T0079587.1 MGP_C3HHeJ_G0030938.1 mouse_genomes_project 6 124778168 124790421 + MGP_C3HHeJ_P0079587 Clec4a2 protein_coding protein_coding MGP_C3HHeJ_T0076874.1 MGP_C3HHeJ_G0030354.1 mouse_genomes_project 6 40654329 40678088 - MGP_C3HHeJ_P0076874 Tcaf2 protein_coding protein_coding MGP_C3HHeJ_T0076875.1 MGP_C3HHeJ_G0030354.1 mouse_genomes_project 6 40657723 40660754 - Tcaf2 protein_coding retained_intron MGP_C3HHeJ_T0015222.1 MGP_C3HHeJ_G0013326.1 mouse_genomes_project 6 70271941 70272112 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080462.1 MGP_C3HHeJ_G0031161.1 mouse_genomes_project 6 145227362 145266763 - MGP_C3HHeJ_P0080462 Gm6614 protein_coding protein_coding MGP_C3HHeJ_T0080463.1 MGP_C3HHeJ_G0031161.1 mouse_genomes_project 6 145227362 145266763 - MGP_C3HHeJ_P0080463 Gm6614 protein_coding protein_coding MGP_C3HHeJ_T0080464.1 MGP_C3HHeJ_G0031161.1 mouse_genomes_project 6 145227713 145264094 - MGP_C3HHeJ_P0080464 Gm6614 protein_coding protein_coding MGP_C3HHeJ_T0001886.1 MGP_C3HHeJ_G0001808.1 mouse_genomes_project 6 12615868 12618104 + TEC TEC MGP_C3HHeJ_T0015176.1 MGP_C3HHeJ_G0013280.1 mouse_genomes_project 6 56441454 56441707 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079399.1 MGP_C3HHeJ_G0030895.1 mouse_genomes_project 6 118445993 118446898 + MGP_C3HHeJ_P0079399 protein_coding protein_coding MGP_C3HHeJ_T0079350.1 MGP_C3HHeJ_G0030882.1 mouse_genomes_project 6 113672628 113735294 - MGP_C3HHeJ_P0079350 Eif2ak3 protein_coding protein_coding MGP_C3HHeJ_T0079351.1 MGP_C3HHeJ_G0030882.1 mouse_genomes_project 6 113678497 113681992 - Eif2ak3 protein_coding retained_intron MGP_C3HHeJ_T0079352.1 MGP_C3HHeJ_G0030882.1 mouse_genomes_project 6 113685319 113699982 - Eif2ak3 protein_coding retained_intron MGP_C3HHeJ_T0079353.1 MGP_C3HHeJ_G0030882.1 mouse_genomes_project 6 113715009 113735256 - MGP_C3HHeJ_P0079353 Eif2ak3 protein_coding protein_coding MGP_C3HHeJ_T0079354.1 MGP_C3HHeJ_G0030882.1 mouse_genomes_project 6 113734189 113735253 - Eif2ak3 protein_coding retained_intron MGP_C3HHeJ_T0008466.1 MGP_C3HHeJ_G0006844.1 mouse_genomes_project 6 29302685 29306597 - lincRNA lincRNA MGP_C3HHeJ_T0015224.1 MGP_C3HHeJ_G0013328.1 mouse_genomes_project 6 70878214 70878682 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102096.1 MGP_C3HHeJ_G0040061.1 mouse_genomes_project 6 57356603 57357503 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0075973.1 MGP_C3HHeJ_G0030159.1 mouse_genomes_project 6 11672355 11715284 - MGP_C3HHeJ_P0075973 Ppp1r3a protein_coding protein_coding MGP_C3HHeJ_T0008440.1 MGP_C3HHeJ_G0006828.1 mouse_genomes_project 6 23302605 23349819 + Gm20756 lincRNA lincRNA MGP_C3HHeJ_T0008441.1 MGP_C3HHeJ_G0006828.1 mouse_genomes_project 6 23326740 23330435 + Gm20756 lincRNA lincRNA MGP_C3HHeJ_T0015246.1 MGP_C3HHeJ_G0013350.1 mouse_genomes_project 6 81480540 81481325 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079449.1 MGP_C3HHeJ_G0030908.1 mouse_genomes_project 6 122226917 122263058 + Bcl2l13 protein_coding retained_intron MGP_C3HHeJ_T0079450.1 MGP_C3HHeJ_G0030908.1 mouse_genomes_project 6 122226917 122260806 + MGP_C3HHeJ_P0079450 Bcl2l13 protein_coding protein_coding MGP_C3HHeJ_T0079451.1 MGP_C3HHeJ_G0030908.1 mouse_genomes_project 6 122226931 122271612 + MGP_C3HHeJ_P0079451 Bcl2l13 protein_coding protein_coding MGP_C3HHeJ_T0079452.1 MGP_C3HHeJ_G0030908.1 mouse_genomes_project 6 122226943 122287944 + MGP_C3HHeJ_P0079452 Bcl2l13 protein_coding protein_coding MGP_C3HHeJ_T0008663.1 MGP_C3HHeJ_G0006995.1 mouse_genomes_project 6 137532498 137534933 - Gm43949 lincRNA lincRNA MGP_C3HHeJ_T0079934.1 MGP_C3HHeJ_G0031012.1 mouse_genomes_project 6 129053726 129067567 + MGP_C3HHeJ_P0079934 Fgf6 protein_coding protein_coding MGP_C3HHeJ_T0001977.1 MGP_C3HHeJ_G0001898.1 mouse_genomes_project 6 69923324 69924374 + TEC TEC MGP_C3HHeJ_T0015389.1 MGP_C3HHeJ_G0013493.1 mouse_genomes_project 6 123914808 123915190 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078440.1 MGP_C3HHeJ_G0030697.1 mouse_genomes_project 6 93725723 93726947 + MGP_C3HHeJ_P0078440 Vmn1r53 protein_coding protein_coding MGP_C3HHeJ_T0011545.1 MGP_C3HHeJ_G0009678.1 mouse_genomes_project 6 50708115 50708240 + Gm27867 misc_RNA misc_RNA MGP_C3HHeJ_T0011581.1 MGP_C3HHeJ_G0009714.1 mouse_genomes_project 6 148661089 148661419 - Gm22793 misc_RNA misc_RNA MGP_C3HHeJ_T0077702.1 MGP_C3HHeJ_G0030558.1 mouse_genomes_project 6 66558062 66560709 - MGP_C3HHeJ_P0077702 protein_coding protein_coding MGP_C3HHeJ_T0000041.1 MGP_C3HHeJ_G0000034.1 mouse_genomes_project 6 113867051 113867093 - Igkj5 IG_J_gene processed_transcript MGP_C3HHeJ_T0000042.1 MGP_C3HHeJ_G0000034.1 mouse_genomes_project 6 113867055 113867093 - MGP_C3HHeJ_P0000042 Igkj5 IG_J_gene IG_J_gene MGP_C3HHeJ_T0008428.1 MGP_C3HHeJ_G0006819.1 mouse_genomes_project 6 10803540 10983388 + lincRNA lincRNA MGP_C3HHeJ_T0008429.1 MGP_C3HHeJ_G0006819.1 mouse_genomes_project 6 10803583 10829886 + lincRNA lincRNA MGP_C3HHeJ_T0100750.1 MGP_C3HHeJ_G0038944.1 mouse_genomes_project 6 40302357 40302435 + Gm25108 snoRNA snoRNA MGP_C3HHeJ_T0001988.1 MGP_C3HHeJ_G0001909.1 mouse_genomes_project 6 82040143 82042252 - TEC TEC MGP_C3HHeJ_T0077392.1 MGP_C3HHeJ_G0030489.1 mouse_genomes_project 6 56064179 56065079 + MGP_C3HHeJ_P0077392 Vmn1r15 protein_coding protein_coding MGP_C3HHeJ_T0001910.1 MGP_C3HHeJ_G0001832.1 mouse_genomes_project 6 28915071 28917802 + TEC TEC MGP_C3HHeJ_T0101241.1 MGP_C3HHeJ_G0039367.1 mouse_genomes_project 6 32119853 32143725 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101242.1 MGP_C3HHeJ_G0039367.1 mouse_genomes_project 6 32120014 32140806 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101243.1 MGP_C3HHeJ_G0039367.1 mouse_genomes_project 6 32140774 32140947 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101244.1 MGP_C3HHeJ_G0039367.1 mouse_genomes_project 6 32141214 32143726 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0078255.1 MGP_C3HHeJ_G0030659.1 mouse_genomes_project 6 87569999 87571746 + MGP_C3HHeJ_P0078255 1700123L14Rik protein_coding protein_coding MGP_C3HHeJ_T0080160.1 MGP_C3HHeJ_G0031084.1 mouse_genomes_project 6 135322711 135324292 + MGP_C3HHeJ_P0080160 protein_coding protein_coding MGP_C3HHeJ_T0076401.1 MGP_C3HHeJ_G0030236.1 mouse_genomes_project 6 28141486 28167950 + MGP_C3HHeJ_P0076401 Cpa4 protein_coding protein_coding MGP_C3HHeJ_T0015413.1 MGP_C3HHeJ_G0013517.1 mouse_genomes_project 6 129277015 129279220 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015181.1 MGP_C3HHeJ_G0013285.1 mouse_genomes_project 6 57323330 57323760 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015329.1 MGP_C3HHeJ_G0013433.1 mouse_genomes_project 6 114192887 114194784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077296.1 MGP_C3HHeJ_G0030459.1 mouse_genomes_project 6 53458591 53539462 + MGP_C3HHeJ_P0077296 Znrf2 protein_coding protein_coding MGP_C3HHeJ_T0077297.1 MGP_C3HHeJ_G0030459.1 mouse_genomes_project 6 53458945 53524379 + MGP_C3HHeJ_P0077297 Znrf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077298.1 MGP_C3HHeJ_G0030459.1 mouse_genomes_project 6 53459123 53531073 + MGP_C3HHeJ_P0077298 Znrf2 protein_coding protein_coding MGP_C3HHeJ_T0015305.1 MGP_C3HHeJ_G0013409.1 mouse_genomes_project 6 105243780 105244489 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076581.1 MGP_C3HHeJ_G0030266.1 mouse_genomes_project 6 33007773 33048631 - MGP_C3HHeJ_P0076581 Slc13a4 protein_coding protein_coding MGP_C3HHeJ_T0076582.1 MGP_C3HHeJ_G0030266.1 mouse_genomes_project 6 33020873 33028798 - Slc13a4 protein_coding retained_intron MGP_C3HHeJ_T0076583.1 MGP_C3HHeJ_G0030266.1 mouse_genomes_project 6 33027126 33048629 - Slc13a4 protein_coding retained_intron MGP_C3HHeJ_T0015060.1 MGP_C3HHeJ_G0013164.1 mouse_genomes_project 6 5430440 5431687 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099506.1 MGP_C3HHeJ_G0037700.1 mouse_genomes_project 6 26593752 26593918 - Gm25589 snRNA snRNA MGP_C3HHeJ_T0080184.1 MGP_C3HHeJ_G0031105.1 mouse_genomes_project 6 136760099 136764001 - MGP_C3HHeJ_P0080184 Kap protein_coding protein_coding MGP_C3HHeJ_T0080185.1 MGP_C3HHeJ_G0031105.1 mouse_genomes_project 6 136760202 136763912 - MGP_C3HHeJ_P0080185 Kap protein_coding protein_coding MGP_C3HHeJ_T0080163.1 MGP_C3HHeJ_G0031086.1 mouse_genomes_project 6 135432064 135432982 - MGP_C3HHeJ_P0080163 Tas2r121 protein_coding protein_coding MGP_C3HHeJ_T0002149.1 MGP_C3HHeJ_G0002070.1 mouse_genomes_project 6 151819677 151825125 - TEC TEC MGP_C3HHeJ_T0011576.1 MGP_C3HHeJ_G0009709.1 mouse_genomes_project 6 143739743 143739996 + Gm25780 misc_RNA misc_RNA MGP_C3HHeJ_T0015443.1 MGP_C3HHeJ_G0013547.1 mouse_genomes_project 6 135613561 135613920 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080159.1 MGP_C3HHeJ_G0031083.1 mouse_genomes_project 6 135295245 135296826 + MGP_C3HHeJ_P0080159 protein_coding protein_coding MGP_C3HHeJ_T0004936.1 MGP_C3HHeJ_G0004220.1 mouse_genomes_project 6 93240659 93241758 - Gm44123 antisense antisense MGP_C3HHeJ_T0008524.1 MGP_C3HHeJ_G0006883.1 mouse_genomes_project 6 51814343 51819528 + Gm4872 lincRNA lincRNA MGP_C3HHeJ_T0015275.1 MGP_C3HHeJ_G0013379.1 mouse_genomes_project 6 92306296 92306691 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077468.1 MGP_C3HHeJ_G0030518.1 mouse_genomes_project 6 59967628 59989910 + Mmrn1 protein_coding retained_intron MGP_C3HHeJ_T0077469.1 MGP_C3HHeJ_G0030518.1 mouse_genomes_project 6 59988267 60032794 + MGP_C3HHeJ_P0077469 Mmrn1 protein_coding protein_coding MGP_C3HHeJ_T0077470.1 MGP_C3HHeJ_G0030518.1 mouse_genomes_project 6 59988269 60032794 + MGP_C3HHeJ_P0077470 Mmrn1 protein_coding protein_coding MGP_C3HHeJ_T0077139.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48768370 48863353 - MGP_C3HHeJ_P0077139 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077140.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48770223 48775390 - Osbpl3 protein_coding retained_intron MGP_C3HHeJ_T0077141.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48770727 48845769 - MGP_C3HHeJ_P0077141 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077142.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48771839 48939100 - MGP_C3HHeJ_P0077142 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077143.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48771845 48845872 - MGP_C3HHeJ_P0077143 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077144.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48775249 48863353 - Osbpl3 protein_coding retained_intron MGP_C3HHeJ_T0077145.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48803085 48827573 - MGP_C3HHeJ_P0077145 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077146.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48823714 48939091 - MGP_C3HHeJ_P0077146 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077147.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48828435 48877674 - MGP_C3HHeJ_P0077147 Osbpl3 protein_coding protein_coding MGP_C3HHeJ_T0077148.1 MGP_C3HHeJ_G0030423.1 mouse_genomes_project 6 48891936 48939131 - Osbpl3 protein_coding processed_transcript MGP_C3HHeJ_T0010708.1 MGP_C3HHeJ_G0008841.1 mouse_genomes_project 6 98359887 98359982 + Mir6375 miRNA miRNA MGP_C3HHeJ_T0077652.1 MGP_C3HHeJ_G0030547.1 mouse_genomes_project 6 64963383 65047778 - MGP_C3HHeJ_P0077652 Rasgef1a protein_coding protein_coding MGP_C3HHeJ_T0077653.1 MGP_C3HHeJ_G0030547.1 mouse_genomes_project 6 64964358 64990770 - MGP_C3HHeJ_P0077653 Rasgef1a protein_coding protein_coding MGP_C3HHeJ_T0077654.1 MGP_C3HHeJ_G0030547.1 mouse_genomes_project 6 64964429 64990770 - MGP_C3HHeJ_P0077654 Rasgef1a protein_coding protein_coding MGP_C3HHeJ_T0015074.1 MGP_C3HHeJ_G0013178.1 mouse_genomes_project 6 11334269 11334840 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000179.1 MGP_C3HHeJ_G0000136.1 mouse_genomes_project 6 116374386 116375151 - MGP_C3HHeJ_P0000179 Igkv1-99 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000180.1 MGP_C3HHeJ_G0000136.1 mouse_genomes_project 6 116374386 116375165 - MGP_C3HHeJ_P0000180 Igkv1-99 IG_V_gene IG_V_gene MGP_C3HHeJ_T0001915.1 MGP_C3HHeJ_G0001837.1 mouse_genomes_project 6 33928990 33931394 - TEC TEC MGP_C3HHeJ_T0015203.1 MGP_C3HHeJ_G0013307.1 mouse_genomes_project 6 65889384 65889761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080067.1 MGP_C3HHeJ_G0031047.1 mouse_genomes_project 6 131642221 131652807 - MGP_C3HHeJ_P0080067 Clec12b protein_coding protein_coding MGP_C3HHeJ_T0080068.1 MGP_C3HHeJ_G0031047.1 mouse_genomes_project 6 131642493 131653178 - MGP_C3HHeJ_P0080068 Clec12b protein_coding protein_coding MGP_C3HHeJ_T0001911.1 MGP_C3HHeJ_G0001833.1 mouse_genomes_project 6 30698169 30701165 - TEC TEC MGP_C3HHeJ_T0002608.1 MGP_C3HHeJ_G0002502.1 mouse_genomes_project 6 39027280 39027819 + MGP_C3HHeJ_P0002608 Trbv3 TR_V_gene TR_V_gene MGP_C3HHeJ_T0000142.1 MGP_C3HHeJ_G0000110.1 mouse_genomes_project 6 114654621 114655189 + MGP_C3HHeJ_P0000142 Igkv7-33 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000143.1 MGP_C3HHeJ_G0000110.1 mouse_genomes_project 6 114654621 114655189 + MGP_C3HHeJ_P0000143 Igkv7-33 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002142.1 MGP_C3HHeJ_G0002063.1 mouse_genomes_project 6 149351716 149354561 + TEC TEC MGP_C3HHeJ_T0079917.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128954546 128976204 - MGP_C3HHeJ_P0079917 Rad51ap1 protein_coding protein_coding MGP_C3HHeJ_T0079918.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128954911 128957309 - Rad51ap1 protein_coding retained_intron MGP_C3HHeJ_T0079919.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128954911 128976204 - MGP_C3HHeJ_P0079919 Rad51ap1 protein_coding protein_coding MGP_C3HHeJ_T0079920.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128955675 128957215 - Rad51ap1 protein_coding processed_transcript MGP_C3HHeJ_T0079921.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128956486 128959752 - Rad51ap1 protein_coding retained_intron MGP_C3HHeJ_T0079922.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128957841 128976188 - MGP_C3HHeJ_P0079922 Rad51ap1 protein_coding protein_coding MGP_C3HHeJ_T0079923.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128957857 128959590 - Rad51ap1 protein_coding retained_intron MGP_C3HHeJ_T0079924.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128959126 128976163 - Rad51ap1 protein_coding processed_transcript MGP_C3HHeJ_T0079925.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128959588 128976192 - MGP_C3HHeJ_P0079925 Rad51ap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079926.1 MGP_C3HHeJ_G0031010.1 mouse_genomes_project 6 128960159 128976204 - Rad51ap1 protein_coding retained_intron MGP_C3HHeJ_T0079082.1 MGP_C3HHeJ_G0030823.1 mouse_genomes_project 6 101233376 101237338 - MGP_C3HHeJ_P0079082 M1ap protein_coding protein_coding MGP_C3HHeJ_T0079083.1 MGP_C3HHeJ_G0030823.1 mouse_genomes_project 6 101233502 101319377 - MGP_C3HHeJ_P0079083 M1ap protein_coding protein_coding MGP_C3HHeJ_T0079084.1 MGP_C3HHeJ_G0030823.1 mouse_genomes_project 6 101233862 101235425 - M1ap protein_coding retained_intron MGP_C3HHeJ_T0076886.1 MGP_C3HHeJ_G0030358.1 mouse_genomes_project 6 40826999 40827953 + MGP_C3HHeJ_P0076886 Olfr452 protein_coding protein_coding MGP_C3HHeJ_T0076294.1 MGP_C3HHeJ_G0030223.1 mouse_genomes_project 6 27031152 27041832 + MGP_C3HHeJ_P0076294 Irf5 protein_coding protein_coding MGP_C3HHeJ_T0076295.1 MGP_C3HHeJ_G0030223.1 mouse_genomes_project 6 27031235 27047065 + MGP_C3HHeJ_P0076295 Irf5 protein_coding protein_coding MGP_C3HHeJ_T0076296.1 MGP_C3HHeJ_G0030223.1 mouse_genomes_project 6 27032797 27038510 + MGP_C3HHeJ_P0076296 Irf5 protein_coding protein_coding MGP_C3HHeJ_T0076297.1 MGP_C3HHeJ_G0030223.1 mouse_genomes_project 6 27033793 27041832 + MGP_C3HHeJ_P0076297 Irf5 protein_coding protein_coding MGP_C3HHeJ_T0076298.1 MGP_C3HHeJ_G0030223.1 mouse_genomes_project 6 27035760 27039859 + MGP_C3HHeJ_P0076298 Irf5 protein_coding protein_coding MGP_C3HHeJ_T0076303.1 MGP_C3HHeJ_G0030223.1 mouse_genomes_project 6 27046340 27047052 + Irf5 protein_coding processed_transcript MGP_C3HHeJ_T0004857.1 MGP_C3HHeJ_G0004164.1 mouse_genomes_project 6 32434368 32434603 - Npn2 antisense antisense MGP_C3HHeJ_T0004858.1 MGP_C3HHeJ_G0004164.1 mouse_genomes_project 6 32434527 32434602 - Npn2 antisense antisense MGP_C3HHeJ_T0011547.1 MGP_C3HHeJ_G0009680.1 mouse_genomes_project 6 50711712 50711814 + Gm27868 misc_RNA misc_RNA MGP_C3HHeJ_T0099547.1 MGP_C3HHeJ_G0037741.1 mouse_genomes_project 6 126879958 126880061 + Gm23851 snRNA snRNA MGP_C3HHeJ_T0011568.1 MGP_C3HHeJ_G0009701.1 mouse_genomes_project 6 99141475 99141730 - Gm26353 misc_RNA misc_RNA MGP_C3HHeJ_T0015201.1 MGP_C3HHeJ_G0013305.1 mouse_genomes_project 6 65278382 65278883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080098.1 MGP_C3HHeJ_G0031056.1 mouse_genomes_project 6 131883195 131897305 - MGP_C3HHeJ_P0080098 Klrk1 protein_coding protein_coding MGP_C3HHeJ_T0080099.1 MGP_C3HHeJ_G0031056.1 mouse_genomes_project 6 131885283 131896211 - MGP_C3HHeJ_P0080099 Klrk1 protein_coding protein_coding MGP_C3HHeJ_T0080100.1 MGP_C3HHeJ_G0031056.1 mouse_genomes_project 6 131885329 131897282 - MGP_C3HHeJ_P0080100 Klrk1 protein_coding protein_coding MGP_C3HHeJ_T0080101.1 MGP_C3HHeJ_G0031056.1 mouse_genomes_project 6 131889291 131896020 - Klrk1 protein_coding retained_intron MGP_C3HHeJ_T0080102.1 MGP_C3HHeJ_G0031056.1 mouse_genomes_project 6 131889366 131896123 - Klrk1 protein_coding retained_intron MGP_C3HHeJ_T0080103.1 MGP_C3HHeJ_G0031056.1 mouse_genomes_project 6 131894040 131897301 - Klrk1 protein_coding retained_intron MGP_C3HHeJ_T0076502.1 MGP_C3HHeJ_G0030255.1 mouse_genomes_project 6 32112777 32123600 + MGP_C3HHeJ_P0076502 Akr1b7 protein_coding protein_coding MGP_C3HHeJ_T0000265.1 MGP_C3HHeJ_G0000215.1 mouse_genomes_project 6 114672659 114672969 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0001891.1 MGP_C3HHeJ_G0001813.1 mouse_genomes_project 6 14949655 14955260 + TEC TEC MGP_C3HHeJ_T0100760.1 MGP_C3HHeJ_G0038954.1 mouse_genomes_project 6 56685057 56685186 - Gm25726 snoRNA snoRNA MGP_C3HHeJ_T0099546.1 MGP_C3HHeJ_G0037740.1 mouse_genomes_project 6 126641850 126641912 - Rnu7 snRNA snRNA MGP_C3HHeJ_T0015081.1 MGP_C3HHeJ_G0013185.1 mouse_genomes_project 6 15340936 15341897 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004842.1 MGP_C3HHeJ_G0004151.1 mouse_genomes_project 6 19076344 19077410 + Gm42582 antisense antisense MGP_C3HHeJ_T0080015.1 MGP_C3HHeJ_G0031030.1 mouse_genomes_project 6 130596464 130646086 - MGP_C3HHeJ_P0080015 Pzp protein_coding protein_coding MGP_C3HHeJ_T0080016.1 MGP_C3HHeJ_G0031030.1 mouse_genomes_project 6 130599075 130601361 - Pzp protein_coding processed_transcript MGP_C3HHeJ_T0080017.1 MGP_C3HHeJ_G0031030.1 mouse_genomes_project 6 130608405 130610281 - Pzp protein_coding retained_intron MGP_C3HHeJ_T0080018.1 MGP_C3HHeJ_G0031030.1 mouse_genomes_project 6 130640614 130646069 - MGP_C3HHeJ_P0080018 Pzp protein_coding protein_coding MGP_C3HHeJ_T0080393.1 MGP_C3HHeJ_G0031146.1 mouse_genomes_project 6 141820873 141822330 - MGP_C3HHeJ_P0080393 Igbp1b protein_coding protein_coding MGP_C3HHeJ_T0101249.1 MGP_C3HHeJ_G0039370.1 mouse_genomes_project 6 93718472 93842942 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101250.1 MGP_C3HHeJ_G0039370.1 mouse_genomes_project 6 93718501 93719594 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0002110.1 MGP_C3HHeJ_G0002031.1 mouse_genomes_project 6 130457759 130458915 + TEC TEC MGP_C3HHeJ_T0102078.1 MGP_C3HHeJ_G0040043.1 mouse_genomes_project 6 40784331 40784395 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102134.1 MGP_C3HHeJ_G0040098.1 mouse_genomes_project 6 135609239 135610142 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078748.1 MGP_C3HHeJ_G0030759.1 mouse_genomes_project 6 97748984 97753398 - MGP_C3HHeJ_P0078748 Fam136a protein_coding protein_coding MGP_C3HHeJ_T0078749.1 MGP_C3HHeJ_G0030759.1 mouse_genomes_project 6 97750244 97753320 - MGP_C3HHeJ_P0078749 Fam136a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078750.1 MGP_C3HHeJ_G0030759.1 mouse_genomes_project 6 97752024 97753330 - Fam136a protein_coding retained_intron MGP_C3HHeJ_T0077090.1 MGP_C3HHeJ_G0030413.1 mouse_genomes_project 6 47441715 47443547 + Gpnmb protein_coding retained_intron MGP_C3HHeJ_T0077091.1 MGP_C3HHeJ_G0030413.1 mouse_genomes_project 6 47441784 47463962 + MGP_C3HHeJ_P0077091 Gpnmb protein_coding protein_coding MGP_C3HHeJ_T0077092.1 MGP_C3HHeJ_G0030413.1 mouse_genomes_project 6 47441834 47448673 + MGP_C3HHeJ_P0077092 Gpnmb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077093.1 MGP_C3HHeJ_G0030413.1 mouse_genomes_project 6 47441846 47481386 + MGP_C3HHeJ_P0077093 Gpnmb protein_coding protein_coding MGP_C3HHeJ_T0077094.1 MGP_C3HHeJ_G0030413.1 mouse_genomes_project 6 47453176 47454104 + Gpnmb protein_coding retained_intron MGP_C3HHeJ_T0077421.1 MGP_C3HHeJ_G0030503.1 mouse_genomes_project 6 56728030 56728939 - MGP_C3HHeJ_P0077421 protein_coding protein_coding MGP_C3HHeJ_T0008472.1 MGP_C3HHeJ_G0006849.1 mouse_genomes_project 6 31670954 31678325 - Gm13853 lincRNA lincRNA MGP_C3HHeJ_T0001990.1 MGP_C3HHeJ_G0001911.1 mouse_genomes_project 6 82235898 82236857 + TEC TEC MGP_C3HHeJ_T0008471.1 MGP_C3HHeJ_G0006848.1 mouse_genomes_project 6 30395604 30396263 - BC049739 lincRNA lincRNA MGP_C3HHeJ_T0079855.1 MGP_C3HHeJ_G0030994.1 mouse_genomes_project 6 127167497 127171849 - MGP_C3HHeJ_P0079855 Cd27 protein_coding protein_coding MGP_C3HHeJ_T0079856.1 MGP_C3HHeJ_G0030994.1 mouse_genomes_project 6 127167998 127171833 - MGP_C3HHeJ_P0079856 Cd27 protein_coding protein_coding MGP_C3HHeJ_T0079857.1 MGP_C3HHeJ_G0030994.1 mouse_genomes_project 6 127168069 127171792 - MGP_C3HHeJ_P0079857 Cd27 protein_coding protein_coding MGP_C3HHeJ_T0079858.1 MGP_C3HHeJ_G0030994.1 mouse_genomes_project 6 127168403 127169662 - Cd27 protein_coding retained_intron MGP_C3HHeJ_T0079859.1 MGP_C3HHeJ_G0030994.1 mouse_genomes_project 6 127168539 127169522 - Cd27 protein_coding retained_intron MGP_C3HHeJ_T0079860.1 MGP_C3HHeJ_G0030994.1 mouse_genomes_project 6 127170947 127171842 - Cd27 protein_coding retained_intron MGP_C3HHeJ_T0100797.1 MGP_C3HHeJ_G0038991.1 mouse_genomes_project 6 125922343 125922462 + Gm22916 snoRNA snoRNA MGP_C3HHeJ_T0005051.1 MGP_C3HHeJ_G0004303.1 mouse_genomes_project 6 148407000 148409872 + Gm26666 antisense antisense MGP_C3HHeJ_T0076418.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28304182 28322783 + MGP_C3HHeJ_P0076418 Mest protein_coding protein_coding MGP_C3HHeJ_T0076419.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28304182 28312970 + MGP_C3HHeJ_P0076419 Mest protein_coding protein_coding MGP_C3HHeJ_T0076420.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28312223 28322787 + MGP_C3HHeJ_P0076420 Mest protein_coding protein_coding MGP_C3HHeJ_T0076421.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28313709 28323045 + MGP_C3HHeJ_P0076421 Mest protein_coding protein_coding MGP_C3HHeJ_T0076422.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28313761 28328663 + MGP_C3HHeJ_P0076422 Mest protein_coding protein_coding MGP_C3HHeJ_T0076423.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28318309 28328663 + MGP_C3HHeJ_P0076423 Mest protein_coding protein_coding MGP_C3HHeJ_T0076424.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28318312 28328666 + MGP_C3HHeJ_P0076424 Mest protein_coding protein_coding MGP_C3HHeJ_T0076425.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28318314 28319138 + Mest protein_coding processed_transcript MGP_C3HHeJ_T0076426.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28320990 28323351 + Mest protein_coding retained_intron MGP_C3HHeJ_T0076427.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28322284 28323349 + Mest protein_coding retained_intron MGP_C3HHeJ_T0076428.1 MGP_C3HHeJ_G0030240.1 mouse_genomes_project 6 28322297 28323359 + Mest protein_coding retained_intron MGP_C3HHeJ_T0077771.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67226328 67293858 - MGP_C3HHeJ_P0077771 Ift122 protein_coding protein_coding MGP_C3HHeJ_T0077772.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67226332 67248958 - Ift122 protein_coding retained_intron MGP_C3HHeJ_T0077773.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67226333 67252481 - Ift122 protein_coding processed_transcript MGP_C3HHeJ_T0077774.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67226334 67293748 - MGP_C3HHeJ_P0077774 Ift122 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077775.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67226337 67293798 - MGP_C3HHeJ_P0077775 Ift122 protein_coding protein_coding MGP_C3HHeJ_T0077776.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67226697 67293693 - MGP_C3HHeJ_P0077776 Ift122 protein_coding protein_coding MGP_C3HHeJ_T0077777.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67251972 67257590 - Ift122 protein_coding retained_intron MGP_C3HHeJ_T0077778.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67262659 67264350 - Ift122 protein_coding retained_intron MGP_C3HHeJ_T0077779.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67264129 67265518 - Ift122 protein_coding processed_transcript MGP_C3HHeJ_T0077780.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67264134 67274138 - Ift122 protein_coding processed_transcript MGP_C3HHeJ_T0077781.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67276107 67293683 - Ift122 protein_coding processed_transcript MGP_C3HHeJ_T0077782.1 MGP_C3HHeJ_G0030570.1 mouse_genomes_project 6 67291245 67293740 - Ift122 protein_coding retained_intron MGP_C3HHeJ_T0011528.1 MGP_C3HHeJ_G0009661.1 mouse_genomes_project 6 14710345 14710477 + Gm27755 misc_RNA misc_RNA MGP_C3HHeJ_T0076116.1 MGP_C3HHeJ_G0030181.1 mouse_genomes_project 6 20148583 20329221 + MGP_C3HHeJ_P0076116 Ptprz1 protein_coding protein_coding MGP_C3HHeJ_T0076117.1 MGP_C3HHeJ_G0030181.1 mouse_genomes_project 6 20148778 20280728 + MGP_C3HHeJ_P0076117 Ptprz1 protein_coding protein_coding MGP_C3HHeJ_T0076118.1 MGP_C3HHeJ_G0030181.1 mouse_genomes_project 6 20148833 20328922 + MGP_C3HHeJ_P0076118 Ptprz1 protein_coding protein_coding MGP_C3HHeJ_T0076119.1 MGP_C3HHeJ_G0030181.1 mouse_genomes_project 6 20248285 20248720 + Ptprz1 protein_coding retained_intron MGP_C3HHeJ_T0076120.1 MGP_C3HHeJ_G0030181.1 mouse_genomes_project 6 20261818 20275447 + Ptprz1 protein_coding retained_intron MGP_C3HHeJ_T0076121.1 MGP_C3HHeJ_G0030181.1 mouse_genomes_project 6 20324562 20327798 + Ptprz1 protein_coding retained_intron MGP_C3HHeJ_T0004996.1 MGP_C3HHeJ_G0004255.1 mouse_genomes_project 6 112984723 112985647 + 1700040L08Rik antisense antisense MGP_C3HHeJ_T0002616.1 MGP_C3HHeJ_G0002509.1 mouse_genomes_project 6 39110782 39111221 + MGP_C3HHeJ_P0002616 Trbv13-3 TR_V_gene TR_V_gene MGP_C3HHeJ_T0011540.1 MGP_C3HHeJ_G0009673.1 mouse_genomes_project 6 28316223 28316322 + Gm27568 misc_RNA misc_RNA MGP_C3HHeJ_T0078251.1 MGP_C3HHeJ_G0030657.1 mouse_genomes_project 6 86673520 86888832 + MGP_C3HHeJ_P0078251 Fam19a4 protein_coding protein_coding MGP_C3HHeJ_T0078252.1 MGP_C3HHeJ_G0030657.1 mouse_genomes_project 6 86673540 86677306 + Fam19a4 protein_coding retained_intron MGP_C3HHeJ_T0080151.1 MGP_C3HHeJ_G0031076.1 mouse_genomes_project 6 134052478 134112962 + MGP_C3HHeJ_P0080151 protein_coding protein_coding MGP_C3HHeJ_T0080152.1 MGP_C3HHeJ_G0031076.1 mouse_genomes_project 6 134102165 134112968 + MGP_C3HHeJ_P0080152 protein_coding protein_coding MGP_C3HHeJ_T0004830.1 MGP_C3HHeJ_G0004144.1 mouse_genomes_project 6 5189912 5200704 - Gm16055 antisense antisense MGP_C3HHeJ_T0102083.1 MGP_C3HHeJ_G0040048.1 mouse_genomes_project 6 41286403 41286929 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099554.1 MGP_C3HHeJ_G0037748.1 mouse_genomes_project 6 139269768 139269958 + Gm26105 snRNA snRNA MGP_C3HHeJ_T0076899.1 MGP_C3HHeJ_G0030367.1 mouse_genomes_project 6 41261335 41266004 + MGP_C3HHeJ_P0076899 Olfr437 protein_coding protein_coding MGP_C3HHeJ_T0076900.1 MGP_C3HHeJ_G0030367.1 mouse_genomes_project 6 41264986 41266004 + MGP_C3HHeJ_P0076900 Olfr437 protein_coding protein_coding MGP_C3HHeJ_T0005555.1 MGP_C3HHeJ_G0004670.1 mouse_genomes_project 6 67471876 67473683 - D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0005556.1 MGP_C3HHeJ_G0004670.1 mouse_genomes_project 6 67472512 67473656 - D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0102107.1 MGP_C3HHeJ_G0040072.1 mouse_genomes_project 6 97765978 97767115 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0080307.1 MGP_C3HHeJ_G0031131.1 mouse_genomes_project 6 139857047 139881362 + BC049715 protein_coding retained_intron MGP_C3HHeJ_T0080308.1 MGP_C3HHeJ_G0031131.1 mouse_genomes_project 6 139857401 139894127 + MGP_C3HHeJ_P0080308 BC049715 protein_coding protein_coding MGP_C3HHeJ_T0080309.1 MGP_C3HHeJ_G0031131.1 mouse_genomes_project 6 139858256 139894865 + MGP_C3HHeJ_P0080309 BC049715 protein_coding protein_coding MGP_C3HHeJ_T0080311.1 MGP_C3HHeJ_G0031131.1 mouse_genomes_project 6 139894092 139894836 + MGP_C3HHeJ_P0080311 BC049715 protein_coding protein_coding MGP_C3HHeJ_T0015286.1 MGP_C3HHeJ_G0013390.1 mouse_genomes_project 6 98628632 98629101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001934.1 MGP_C3HHeJ_G0001856.1 mouse_genomes_project 6 43716043 43719272 + TEC TEC MGP_C3HHeJ_T0079900.1 MGP_C3HHeJ_G0031004.1 mouse_genomes_project 6 128552323 128555185 - MGP_C3HHeJ_P0079900 Kcna5 protein_coding protein_coding MGP_C3HHeJ_T0101450.1 MGP_C3HHeJ_G0039463.1 mouse_genomes_project 6 125758874 125779307 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0076574.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32909758 32986535 + MGP_C3HHeJ_P0076574 Nup205 protein_coding protein_coding MGP_C3HHeJ_T0076575.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32909767 32986535 + MGP_C3HHeJ_P0076575 Nup205 protein_coding protein_coding MGP_C3HHeJ_T0076576.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32909953 32938649 + Nup205 protein_coding retained_intron MGP_C3HHeJ_T0076577.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32909966 32986529 + MGP_C3HHeJ_P0076577 Nup205 protein_coding protein_coding MGP_C3HHeJ_T0076578.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32938042 32986535 + Nup205 protein_coding processed_transcript MGP_C3HHeJ_T0076579.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32957940 32974870 + Nup205 protein_coding retained_intron MGP_C3HHeJ_T0076580.1 MGP_C3HHeJ_G0030265.1 mouse_genomes_project 6 32981883 32985412 + Nup205 protein_coding retained_intron MGP_C3HHeJ_T0078832.1 MGP_C3HHeJ_G0030780.1 mouse_genomes_project 6 98792102 98835080 + MGP_C3HHeJ_P0078832 protein_coding protein_coding MGP_C3HHeJ_T0078833.1 MGP_C3HHeJ_G0030780.1 mouse_genomes_project 6 98792172 98835085 + MGP_C3HHeJ_P0078833 protein_coding protein_coding MGP_C3HHeJ_T0078834.1 MGP_C3HHeJ_G0030780.1 mouse_genomes_project 6 98828409 98832419 + protein_coding processed_transcript MGP_C3HHeJ_T0002526.1 MGP_C3HHeJ_G0002437.1 mouse_genomes_project 6 39565819 39565869 + MGP_C3HHeJ_P0002526 Trbj1-5 TR_J_gene TR_J_gene MGP_C3HHeJ_T0010676.1 MGP_C3HHeJ_G0008809.1 mouse_genomes_project 6 36356029 36356098 + Mir7670 miRNA miRNA MGP_C3HHeJ_T0076601.1 MGP_C3HHeJ_G0030273.1 mouse_genomes_project 6 35328801 35363741 + MGP_C3HHeJ_P0076601 Akr1d1 protein_coding protein_coding MGP_C3HHeJ_T0076602.1 MGP_C3HHeJ_G0030273.1 mouse_genomes_project 6 35338934 35352566 + Akr1d1 protein_coding processed_transcript MGP_C3HHeJ_T0102089.1 MGP_C3HHeJ_G0040054.1 mouse_genomes_project 6 56881006 56881919 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0080443.1 MGP_C3HHeJ_G0031155.1 mouse_genomes_project 6 144489762 144752497 + MGP_C3HHeJ_P0080443 Pde3a protein_coding protein_coding MGP_C3HHeJ_T0080444.1 MGP_C3HHeJ_G0031155.1 mouse_genomes_project 6 144490459 144714921 + Pde3a protein_coding retained_intron MGP_C3HHeJ_T0011541.1 MGP_C3HHeJ_G0009674.1 mouse_genomes_project 6 44277753 44278057 + Gm22839 misc_RNA misc_RNA MGP_C3HHeJ_T0102122.1 MGP_C3HHeJ_G0040086.1 mouse_genomes_project 6 132039165 132046841 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0078558.1 MGP_C3HHeJ_G0030723.1 mouse_genomes_project 6 95784736 95817121 - MGP_C3HHeJ_P0078558 Dnajb8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078559.1 MGP_C3HHeJ_G0030723.1 mouse_genomes_project 6 95816748 95817738 - MGP_C3HHeJ_P0078559 Dnajb8 protein_coding protein_coding MGP_C3HHeJ_T0008636.1 MGP_C3HHeJ_G0006974.1 mouse_genomes_project 6 118677995 118683573 + lincRNA lincRNA MGP_C3HHeJ_T0008637.1 MGP_C3HHeJ_G0006974.1 mouse_genomes_project 6 118678034 118685818 + lincRNA lincRNA MGP_C3HHeJ_T0076862.1 MGP_C3HHeJ_G0030346.1 mouse_genomes_project 6 40430139 40431021 + MGP_C3HHeJ_P0076862 Tas2r143 protein_coding protein_coding MGP_C3HHeJ_T0015200.1 MGP_C3HHeJ_G0013304.1 mouse_genomes_project 6 65062097 65062883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015408.1 MGP_C3HHeJ_G0013512.1 mouse_genomes_project 6 128964769 128965669 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078063.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563852 70636319 + MGP_C3HHeJ_P0078063 Rad18 protein_coding protein_coding MGP_C3HHeJ_T0078064.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563868 70636194 + MGP_C3HHeJ_P0078064 Rad18 protein_coding protein_coding MGP_C3HHeJ_T0078065.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563890 70629780 + Rad18 protein_coding processed_transcript MGP_C3HHeJ_T0078066.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563894 70598443 + Rad18 protein_coding retained_intron MGP_C3HHeJ_T0078067.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563905 70611711 + MGP_C3HHeJ_P0078067 Rad18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078068.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563927 70636196 + MGP_C3HHeJ_P0078068 Rad18 protein_coding protein_coding MGP_C3HHeJ_T0078069.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70563934 70636224 + MGP_C3HHeJ_P0078069 Rad18 protein_coding protein_coding MGP_C3HHeJ_T0078070.1 MGP_C3HHeJ_G0030619.1 mouse_genomes_project 6 70585763 70635338 + MGP_C3HHeJ_P0078070 Rad18 protein_coding protein_coding MGP_C3HHeJ_T0002528.1 MGP_C3HHeJ_G0002439.1 mouse_genomes_project 6 39566377 39566422 + Trbj1-7 TR_J_gene processed_transcript MGP_C3HHeJ_T0002529.1 MGP_C3HHeJ_G0002439.1 mouse_genomes_project 6 39566377 39566423 + MGP_C3HHeJ_P0002529 Trbj1-7 TR_J_gene TR_J_gene MGP_C3HHeJ_T0077384.1 MGP_C3HHeJ_G0030481.1 mouse_genomes_project 6 55756842 55757823 - MGP_C3HHeJ_P0077384 Vmn1r7 protein_coding protein_coding MGP_C3HHeJ_T0102086.1 MGP_C3HHeJ_G0040051.1 mouse_genomes_project 6 56112229 56113118 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004853.1 MGP_C3HHeJ_G0004160.1 mouse_genomes_project 6 30163213 30167717 + Plxna4os1 antisense antisense MGP_C3HHeJ_T0008591.1 MGP_C3HHeJ_G0006938.1 mouse_genomes_project 6 94831227 94832560 + lincRNA lincRNA MGP_C3HHeJ_T0008630.1 MGP_C3HHeJ_G0006968.1 mouse_genomes_project 6 113193070 113200880 + Gm44175 lincRNA lincRNA MGP_C3HHeJ_T0008416.1 MGP_C3HHeJ_G0006811.1 mouse_genomes_project 6 3437509 3510520 - Gm20618 lincRNA lincRNA MGP_C3HHeJ_T0008417.1 MGP_C3HHeJ_G0006811.1 mouse_genomes_project 6 3464636 3518175 - Gm20618 lincRNA lincRNA MGP_C3HHeJ_T0004883.1 MGP_C3HHeJ_G0004184.1 mouse_genomes_project 6 50724934 50744395 + Hoxaas3 antisense antisense MGP_C3HHeJ_T0004884.1 MGP_C3HHeJ_G0004184.1 mouse_genomes_project 6 50724952 50766396 + Hoxaas3 antisense antisense MGP_C3HHeJ_T0004887.1 MGP_C3HHeJ_G0004184.1 mouse_genomes_project 6 50752519 50764935 + Hoxaas3 antisense antisense MGP_C3HHeJ_T0015237.1 MGP_C3HHeJ_G0013341.1 mouse_genomes_project 6 76331340 76331794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011525.1 MGP_C3HHeJ_G0009658.1 mouse_genomes_project 6 3686294 3686440 - Dlx6os1 misc_RNA misc_RNA MGP_C3HHeJ_T0079589.1 MGP_C3HHeJ_G0030940.1 mouse_genomes_project 6 124891914 124892887 + protein_coding processed_transcript MGP_C3HHeJ_T0076278.1 MGP_C3HHeJ_G0030219.1 mouse_genomes_project 6 26934231 26940066 + Flnc protein_coding retained_intron MGP_C3HHeJ_T0076279.1 MGP_C3HHeJ_G0030219.1 mouse_genomes_project 6 26934251 26963533 + MGP_C3HHeJ_P0076279 Flnc protein_coding protein_coding MGP_C3HHeJ_T0076280.1 MGP_C3HHeJ_G0030219.1 mouse_genomes_project 6 26934251 26963533 + MGP_C3HHeJ_P0076280 Flnc protein_coding protein_coding MGP_C3HHeJ_T0080614.1 MGP_C3HHeJ_G0031187.1 mouse_genomes_project 6 149269343 149276773 - MGP_C3HHeJ_P0080614 Bhlhe41 protein_coding protein_coding MGP_C3HHeJ_T0080615.1 MGP_C3HHeJ_G0031187.1 mouse_genomes_project 6 149274709 149276517 - MGP_C3HHeJ_P0080615 Bhlhe41 protein_coding protein_coding MGP_C3HHeJ_T0080616.1 MGP_C3HHeJ_G0031187.1 mouse_genomes_project 6 149275877 149276567 - Bhlhe41 protein_coding retained_intron MGP_C3HHeJ_T0002063.1 MGP_C3HHeJ_G0001984.1 mouse_genomes_project 6 104033737 104035493 - TEC TEC MGP_C3HHeJ_T0079138.1 MGP_C3HHeJ_G0030839.1 mouse_genomes_project 6 106083409 106084324 - MGP_C3HHeJ_P0079138 Gm8994 protein_coding protein_coding MGP_C3HHeJ_T0004943.1 MGP_C3HHeJ_G0004226.1 mouse_genomes_project 6 95581683 95582510 - Gm44264 antisense antisense MGP_C3HHeJ_T0078369.1 MGP_C3HHeJ_G0030683.1 mouse_genomes_project 6 92495975 92544887 + MGP_C3HHeJ_P0078369 Wnt7a protein_coding protein_coding MGP_C3HHeJ_T0078370.1 MGP_C3HHeJ_G0030683.1 mouse_genomes_project 6 92543770 92544885 + Wnt7a protein_coding processed_transcript MGP_C3HHeJ_T0078371.1 MGP_C3HHeJ_G0030683.1 mouse_genomes_project 6 92543796 92544883 + Wnt7a protein_coding processed_transcript MGP_C3HHeJ_T0100744.1 MGP_C3HHeJ_G0038938.1 mouse_genomes_project 6 22542812 22542935 - Gm22529 snoRNA snoRNA MGP_C3HHeJ_T0015130.1 MGP_C3HHeJ_G0013234.1 mouse_genomes_project 6 39526987 39527434 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102132.1 MGP_C3HHeJ_G0040096.1 mouse_genomes_project 6 135530616 135531608 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004918.1 MGP_C3HHeJ_G0004210.1 mouse_genomes_project 6 74882467 74889119 + Gm44040 antisense antisense MGP_C3HHeJ_T0102080.1 MGP_C3HHeJ_G0040045.1 mouse_genomes_project 6 41188113 41190005 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0079600.1 MGP_C3HHeJ_G0030943.1 mouse_genomes_project 6 124961619 124999932 + MGP_C3HHeJ_P0079600 Vmn2r19 protein_coding protein_coding MGP_C3HHeJ_T0010697.1 MGP_C3HHeJ_G0008830.1 mouse_genomes_project 6 75980362 75980488 + Gm27690 miRNA miRNA MGP_C3HHeJ_T0079240.1 MGP_C3HHeJ_G0030859.1 mouse_genomes_project 6 112097274 112100453 - Tmem150a protein_coding processed_transcript MGP_C3HHeJ_T0079241.1 MGP_C3HHeJ_G0030859.1 mouse_genomes_project 6 112097328 112101502 - MGP_C3HHeJ_P0079241 Tmem150a protein_coding protein_coding MGP_C3HHeJ_T0079242.1 MGP_C3HHeJ_G0030859.1 mouse_genomes_project 6 112097823 112100356 - MGP_C3HHeJ_P0079242 Tmem150a protein_coding protein_coding MGP_C3HHeJ_T0079243.1 MGP_C3HHeJ_G0030859.1 mouse_genomes_project 6 112098174 112101554 - MGP_C3HHeJ_P0079243 Tmem150a protein_coding protein_coding MGP_C3HHeJ_T0015144.1 MGP_C3HHeJ_G0013248.1 mouse_genomes_project 6 45908068 45908258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000279.1 MGP_C3HHeJ_G0000229.1 mouse_genomes_project 6 115905068 115905698 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0001984.1 MGP_C3HHeJ_G0001905.1 mouse_genomes_project 6 79884324 79886423 - TEC TEC MGP_C3HHeJ_T0011535.1 MGP_C3HHeJ_G0009668.1 mouse_genomes_project 6 14941831 14941951 + Gm27402 misc_RNA misc_RNA MGP_C3HHeJ_T0008554.1 MGP_C3HHeJ_G0006909.1 mouse_genomes_project 6 70301917 70304211 - Gm44081 lincRNA lincRNA MGP_C3HHeJ_T0102115.1 MGP_C3HHeJ_G0040080.1 mouse_genomes_project 6 125972517 125973421 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0004852.1 MGP_C3HHeJ_G0004159.1 mouse_genomes_project 6 30101542 30105123 + Plxna4os2 antisense antisense MGP_C3HHeJ_T0077047.1 MGP_C3HHeJ_G0030401.1 mouse_genomes_project 6 47094571 47101204 - MGP_C3HHeJ_P0077047 Gimap6 protein_coding protein_coding MGP_C3HHeJ_T0077048.1 MGP_C3HHeJ_G0030401.1 mouse_genomes_project 6 47094572 47101192 - MGP_C3HHeJ_P0077048 Gimap6 protein_coding protein_coding MGP_C3HHeJ_T0077049.1 MGP_C3HHeJ_G0030401.1 mouse_genomes_project 6 47096734 47101175 - MGP_C3HHeJ_P0077049 Gimap6 protein_coding protein_coding MGP_C3HHeJ_T0077050.1 MGP_C3HHeJ_G0030401.1 mouse_genomes_project 6 47097422 47099238 - Gimap6 protein_coding processed_transcript MGP_C3HHeJ_T0080499.1 MGP_C3HHeJ_G0031169.1 mouse_genomes_project 6 145678576 145727162 - MGP_C3HHeJ_P0080499 Gys2 protein_coding protein_coding MGP_C3HHeJ_T0080500.1 MGP_C3HHeJ_G0031169.1 mouse_genomes_project 6 145678580 145679583 - MGP_C3HHeJ_P0080500 Gys2 protein_coding protein_coding MGP_C3HHeJ_T0015318.1 MGP_C3HHeJ_G0013422.1 mouse_genomes_project 6 111117053 111117477 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076762.1 MGP_C3HHeJ_G0030306.1 mouse_genomes_project 6 38444934 38445947 + MGP_C3HHeJ_P0076762 Tas2r108 protein_coding protein_coding MGP_C3HHeJ_T0079358.1 MGP_C3HHeJ_G0030884.1 mouse_genomes_project 6 117490160 117491895 + MGP_C3HHeJ_P0079358 Tacstd2 protein_coding protein_coding MGP_C3HHeJ_T0100804.1 MGP_C3HHeJ_G0038998.1 mouse_genomes_project 6 138543132 138543247 + Gm25136 snoRNA snoRNA MGP_C3HHeJ_T0079332.1 MGP_C3HHeJ_G0030876.1 mouse_genomes_project 6 113233631 113347124 + MGP_C3HHeJ_P0079332 Smyd1 protein_coding protein_coding MGP_C3HHeJ_T0079333.1 MGP_C3HHeJ_G0030876.1 mouse_genomes_project 6 113233658 113248347 + MGP_C3HHeJ_P0079333 Smyd1 protein_coding protein_coding MGP_C3HHeJ_T0079338.1 MGP_C3HHeJ_G0030876.1 mouse_genomes_project 6 113297842 113348523 + MGP_C3HHeJ_P0079338 Smyd1 protein_coding protein_coding MGP_C3HHeJ_T0079339.1 MGP_C3HHeJ_G0030876.1 mouse_genomes_project 6 113297870 113348521 + MGP_C3HHeJ_P0079339 Smyd1 protein_coding protein_coding MGP_C3HHeJ_T0079340.1 MGP_C3HHeJ_G0030876.1 mouse_genomes_project 6 113297891 113300524 + MGP_C3HHeJ_P0079340 Smyd1 protein_coding protein_coding MGP_C3HHeJ_T0079341.1 MGP_C3HHeJ_G0030876.1 mouse_genomes_project 6 113345591 113346966 + MGP_C3HHeJ_P0079341 Smyd1 protein_coding protein_coding MGP_C3HHeJ_T0015432.1 MGP_C3HHeJ_G0013536.1 mouse_genomes_project 6 133819602 133819717 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076971.1 MGP_C3HHeJ_G0030385.1 mouse_genomes_project 6 46387708 46411864 - MGP_C3HHeJ_P0076971 Zfp746 protein_coding protein_coding MGP_C3HHeJ_T0076972.1 MGP_C3HHeJ_G0030385.1 mouse_genomes_project 6 46387708 46411864 - MGP_C3HHeJ_P0076972 Zfp746 protein_coding protein_coding MGP_C3HHeJ_T0076973.1 MGP_C3HHeJ_G0030385.1 mouse_genomes_project 6 46390064 46392674 - MGP_C3HHeJ_P0076973 Zfp746 protein_coding protein_coding MGP_C3HHeJ_T0076974.1 MGP_C3HHeJ_G0030385.1 mouse_genomes_project 6 46391524 46407549 - Zfp746 protein_coding retained_intron MGP_C3HHeJ_T0076975.1 MGP_C3HHeJ_G0030385.1 mouse_genomes_project 6 46406892 46410481 - Zfp746 protein_coding retained_intron MGP_C3HHeJ_T0076976.1 MGP_C3HHeJ_G0030385.1 mouse_genomes_project 6 46410506 46411817 - Zfp746 protein_coding retained_intron MGP_C3HHeJ_T0015047.1 MGP_C3HHeJ_G0013151.1 mouse_genomes_project 6 1316716 1319702 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008527.1 MGP_C3HHeJ_G0006885.1 mouse_genomes_project 6 53807175 53821112 + Gm43995 lincRNA lincRNA MGP_C3HHeJ_T0078336.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92061858 92126820 + MGP_C3HHeJ_P0078336 Grip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078337.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92082506 92126820 + MGP_C3HHeJ_P0078337 Grip2 protein_coding protein_coding MGP_C3HHeJ_T0078338.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92082569 92106306 + MGP_C3HHeJ_P0078338 Grip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078339.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92082644 92124881 + MGP_C3HHeJ_P0078339 Grip2 protein_coding protein_coding MGP_C3HHeJ_T0078340.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92093702 92097257 + Grip2 protein_coding retained_intron MGP_C3HHeJ_T0078341.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92093718 92105233 + MGP_C3HHeJ_P0078341 Grip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078342.1 MGP_C3HHeJ_G0030677.1 mouse_genomes_project 6 92093723 92126824 + MGP_C3HHeJ_P0078342 Grip2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002064.1 MGP_C3HHeJ_G0001985.1 mouse_genomes_project 6 104065391 104068941 - TEC TEC MGP_C3HHeJ_T0001893.1 MGP_C3HHeJ_G0001815.1 mouse_genomes_project 6 15478050 15479637 - TEC TEC MGP_C3HHeJ_T0010670.1 MGP_C3HHeJ_G0008803.1 mouse_genomes_project 6 28321507 28321605 + Mir335 miRNA miRNA MGP_C3HHeJ_T0001922.1 MGP_C3HHeJ_G0001844.1 mouse_genomes_project 6 41404828 41405456 + TEC TEC MGP_C3HHeJ_T0079969.1 MGP_C3HHeJ_G0031021.1 mouse_genomes_project 6 130321730 130372497 - MGP_C3HHeJ_P0079969 Tead4 protein_coding protein_coding MGP_C3HHeJ_T0079970.1 MGP_C3HHeJ_G0031021.1 mouse_genomes_project 6 130367527 130397515 - MGP_C3HHeJ_P0079970 Tead4 protein_coding protein_coding MGP_C3HHeJ_T0079971.1 MGP_C3HHeJ_G0031021.1 mouse_genomes_project 6 130367577 130397430 - MGP_C3HHeJ_P0079971 Tead4 protein_coding protein_coding MGP_C3HHeJ_T0100738.1 MGP_C3HHeJ_G0038932.1 mouse_genomes_project 6 5335021 5335142 - Gm26075 snoRNA snoRNA MGP_C3HHeJ_T0079042.1 MGP_C3HHeJ_G0030817.1 mouse_genomes_project 6 101191933 101193636 + MGP_C3HHeJ_P0079042 Tlx2 protein_coding protein_coding MGP_C3HHeJ_T0079043.1 MGP_C3HHeJ_G0030817.1 mouse_genomes_project 6 101192001 101193903 + MGP_C3HHeJ_P0079043 Tlx2 protein_coding protein_coding MGP_C3HHeJ_T0005010.1 MGP_C3HHeJ_G0004269.1 mouse_genomes_project 6 126921654 126962701 - Gm43989 antisense antisense MGP_C3HHeJ_T0101254.1 MGP_C3HHeJ_G0039372.1 mouse_genomes_project 6 119849430 119850500 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101255.1 MGP_C3HHeJ_G0039372.1 mouse_genomes_project 6 119849662 119850380 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0077388.1 MGP_C3HHeJ_G0030485.1 mouse_genomes_project 6 55940293 55941320 + MGP_C3HHeJ_P0077388 Vmn1r11 protein_coding protein_coding MGP_C3HHeJ_T0000162.1 MGP_C3HHeJ_G0000124.1 mouse_genomes_project 6 115959009 115959572 + MGP_C3HHeJ_P0000162 Igkv4-86 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000163.1 MGP_C3HHeJ_G0000124.1 mouse_genomes_project 6 115959044 115959572 + MGP_C3HHeJ_P0000163 Igkv4-86 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015401.1 MGP_C3HHeJ_G0013505.1 mouse_genomes_project 6 126091552 126092486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076317.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27303908 27304625 + MGP_C3HHeJ_P0076317 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076318.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27304340 27403832 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076319.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27304389 27452697 + MGP_C3HHeJ_P0076319 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076320.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27304395 27306541 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076321.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27304425 27409377 + MGP_C3HHeJ_P0076321 Ahcyl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076322.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27304435 27452703 + MGP_C3HHeJ_P0076322 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076323.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27335959 27422436 + MGP_C3HHeJ_P0076323 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076324.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27390176 27449602 + MGP_C3HHeJ_P0076324 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076325.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27390183 27399649 + MGP_C3HHeJ_P0076325 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076326.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27390185 27409389 + MGP_C3HHeJ_P0076326 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076327.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27390190 27419342 + MGP_C3HHeJ_P0076327 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076328.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27390307 27403832 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076329.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27395791 27452691 + MGP_C3HHeJ_P0076329 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076330.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27396097 27422445 + MGP_C3HHeJ_P0076330 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076331.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27396122 27422438 + MGP_C3HHeJ_P0076331 Ahcyl2 protein_coding protein_coding MGP_C3HHeJ_T0076332.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27401799 27409979 + Ahcyl2 protein_coding processed_transcript MGP_C3HHeJ_T0076333.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27409052 27452696 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076334.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27415446 27417832 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076335.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27433078 27435484 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076336.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27435610 27449442 + Ahcyl2 protein_coding retained_intron MGP_C3HHeJ_T0076337.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27442315 27449594 + Ahcyl2 protein_coding processed_transcript MGP_C3HHeJ_T0076338.1 MGP_C3HHeJ_G0030227.1 mouse_genomes_project 6 27442787 27449538 + Ahcyl2 protein_coding processed_transcript MGP_C3HHeJ_T0102103.1 MGP_C3HHeJ_G0040068.1 mouse_genomes_project 6 93963764 93970720 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0077644.1 MGP_C3HHeJ_G0030544.1 mouse_genomes_project 6 64632824 64670130 + MGP_C3HHeJ_P0077644 Bms1 protein_coding protein_coding MGP_C3HHeJ_T0077645.1 MGP_C3HHeJ_G0030544.1 mouse_genomes_project 6 64632886 64638465 + Bms1 protein_coding processed_transcript MGP_C3HHeJ_T0077646.1 MGP_C3HHeJ_G0030544.1 mouse_genomes_project 6 64632894 64656224 + Bms1 protein_coding retained_intron MGP_C3HHeJ_T0002535.1 MGP_C3HHeJ_G0002445.1 mouse_genomes_project 6 39574666 39574713 + MGP_C3HHeJ_P0002535 Trbj2-7 TR_J_gene TR_J_gene MGP_C3HHeJ_T0015086.1 MGP_C3HHeJ_G0013190.1 mouse_genomes_project 6 16884190 16885165 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015054.1 MGP_C3HHeJ_G0013158.1 mouse_genomes_project 6 4002967 4003912 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015155.1 MGP_C3HHeJ_G0013259.1 mouse_genomes_project 6 47404356 47405829 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015260.1 MGP_C3HHeJ_G0013364.1 mouse_genomes_project 6 87714298 87714665 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015284.1 MGP_C3HHeJ_G0013388.1 mouse_genomes_project 6 98227249 98228093 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001969.1 MGP_C3HHeJ_G0001890.1 mouse_genomes_project 6 66461446 66464164 - TEC TEC MGP_C3HHeJ_T0015270.1 MGP_C3HHeJ_G0013374.1 mouse_genomes_project 6 90171702 90172576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076063.1 MGP_C3HHeJ_G0030171.1 mouse_genomes_project 6 15211059 15370248 + MGP_C3HHeJ_P0076063 Cftr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076064.1 MGP_C3HHeJ_G0030171.1 mouse_genomes_project 6 15211059 15370249 + MGP_C3HHeJ_P0076064 Cftr protein_coding protein_coding MGP_C3HHeJ_T0076065.1 MGP_C3HHeJ_G0030171.1 mouse_genomes_project 6 15211059 15370248 + MGP_C3HHeJ_P0076065 Cftr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076066.1 MGP_C3HHeJ_G0030171.1 mouse_genomes_project 6 15211143 15280101 + MGP_C3HHeJ_P0076066 Cftr protein_coding protein_coding MGP_C3HHeJ_T0076067.1 MGP_C3HHeJ_G0030171.1 mouse_genomes_project 6 15211196 15368514 + MGP_C3HHeJ_P0076067 Cftr protein_coding protein_coding MGP_C3HHeJ_T0076068.1 MGP_C3HHeJ_G0030171.1 mouse_genomes_project 6 15302940 15313722 + Cftr protein_coding retained_intron MGP_C3HHeJ_T0015194.1 MGP_C3HHeJ_G0013298.1 mouse_genomes_project 6 61744166 61744403 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076160.1 MGP_C3HHeJ_G0030194.1 mouse_genomes_project 6 22055165 22067611 + MGP_C3HHeJ_P0076160 Hyal6 protein_coding protein_coding MGP_C3HHeJ_T0015084.1 MGP_C3HHeJ_G0013188.1 mouse_genomes_project 6 16183856 16185165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0079301.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112892449 112937626 + MGP_C3HHeJ_P0079301 Kdm3a protein_coding protein_coding MGP_C3HHeJ_T0079302.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112892534 112937691 + MGP_C3HHeJ_P0079302 Kdm3a protein_coding protein_coding MGP_C3HHeJ_T0079303.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112892753 112927342 + MGP_C3HHeJ_P0079303 Kdm3a protein_coding protein_coding MGP_C3HHeJ_T0079304.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112892753 112937689 + MGP_C3HHeJ_P0079304 Kdm3a protein_coding protein_coding MGP_C3HHeJ_T0079305.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112905060 112923926 + Kdm3a protein_coding retained_intron MGP_C3HHeJ_T0079306.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112905337 112914983 + Kdm3a protein_coding processed_transcript MGP_C3HHeJ_T0079307.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112914724 112925945 + MGP_C3HHeJ_P0079307 Kdm3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079308.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112917547 112932041 + Kdm3a protein_coding processed_transcript MGP_C3HHeJ_T0079309.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112922688 112923537 + Kdm3a protein_coding processed_transcript MGP_C3HHeJ_T0079310.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112925512 112927241 + Kdm3a protein_coding retained_intron MGP_C3HHeJ_T0079311.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112927248 112929699 + Kdm3a protein_coding retained_intron MGP_C3HHeJ_T0079312.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112929488 112932686 + Kdm3a protein_coding retained_intron MGP_C3HHeJ_T0079313.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112934079 112936106 + Kdm3a protein_coding retained_intron MGP_C3HHeJ_T0079314.1 MGP_C3HHeJ_G0030870.1 mouse_genomes_project 6 112934718 112936535 + Kdm3a protein_coding retained_intron MGP_C3HHeJ_T0000168.1 MGP_C3HHeJ_G0000128.1 mouse_genomes_project 6 116066692 116067222 + MGP_C3HHeJ_P0000168 Igkv4-90 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000203.1 MGP_C3HHeJ_G0000154.1 mouse_genomes_project 6 117234661 117236063 - MGP_C3HHeJ_P0000203 Igkv1-132 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015456.1 MGP_C3HHeJ_G0013560.1 mouse_genomes_project 6 143209941 143210313 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0004961.1 MGP_C3HHeJ_G0004234.1 mouse_genomes_project 6 97638051 97648071 + A430078I02Rik antisense antisense MGP_C3HHeJ_T0004962.1 MGP_C3HHeJ_G0004234.1 mouse_genomes_project 6 97638111 97648606 + A430078I02Rik antisense antisense MGP_C3HHeJ_T0079956.1 MGP_C3HHeJ_G0031017.1 mouse_genomes_project 6 129626116 129698000 + MGP_C3HHeJ_P0079956 Cracr2a protein_coding protein_coding MGP_C3HHeJ_T0079957.1 MGP_C3HHeJ_G0031017.1 mouse_genomes_project 6 129642743 129697905 + MGP_C3HHeJ_P0079957 Cracr2a protein_coding protein_coding MGP_C3HHeJ_T0010672.1 MGP_C3HHeJ_G0008805.1 mouse_genomes_project 6 28683655 28683726 - Mir29b-1 miRNA miRNA MGP_C3HHeJ_T0018026.1 MGP_C3HHeJ_G0015388.1 mouse_genomes_project 6 47137981 47141263 - Gimap1os processed_transcript antisense MGP_C3HHeJ_T0018027.1 MGP_C3HHeJ_G0015388.1 mouse_genomes_project 6 47140142 47142086 - Gimap1os processed_transcript retained_intron MGP_C3HHeJ_T0008556.1 MGP_C3HHeJ_G0006911.1 mouse_genomes_project 6 71064320 71066132 - 1700054K19Rik lincRNA lincRNA MGP_C3HHeJ_T0080772.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152637618 152672494 - MGP_C3HHeJ_P0080772 Amn1 protein_coding protein_coding MGP_C3HHeJ_T0080773.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152637738 152657154 - Amn1 protein_coding retained_intron MGP_C3HHeJ_T0080774.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152638048 152672446 - Amn1 protein_coding processed_transcript MGP_C3HHeJ_T0080775.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152638049 152672467 - MGP_C3HHeJ_P0080775 Amn1 protein_coding protein_coding MGP_C3HHeJ_T0080776.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152638054 152667276 - Amn1 protein_coding processed_transcript MGP_C3HHeJ_T0080777.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152638070 152667273 - MGP_C3HHeJ_P0080777 Amn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080778.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152648177 152672463 - Amn1 protein_coding processed_transcript MGP_C3HHeJ_T0080779.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152652613 152672452 - Amn1 protein_coding retained_intron MGP_C3HHeJ_T0080780.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152652779 152672477 - Amn1 protein_coding processed_transcript MGP_C3HHeJ_T0080781.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152654656 152672469 - MGP_C3HHeJ_P0080781 Amn1 protein_coding protein_coding MGP_C3HHeJ_T0080782.1 MGP_C3HHeJ_G0031213.1 mouse_genomes_project 6 152656644 152672484 - Amn1 protein_coding retained_intron MGP_C3HHeJ_T0002050.1 MGP_C3HHeJ_G0001971.1 mouse_genomes_project 6 98097473 98099273 - TEC TEC MGP_C3HHeJ_T0000264.1 MGP_C3HHeJ_G0000214.1 mouse_genomes_project 6 114602082 114602638 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0002030.1 MGP_C3HHeJ_G0001951.1 mouse_genomes_project 6 96060869 96061913 + TEC TEC MGP_C3HHeJ_T0005060.1 MGP_C3HHeJ_G0004311.1 mouse_genomes_project 6 151793937 151797256 + Gm44020 antisense antisense MGP_C3HHeJ_T0015392.1 MGP_C3HHeJ_G0013496.1 mouse_genomes_project 6 124193461 124193652 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002125.1 MGP_C3HHeJ_G0002046.1 mouse_genomes_project 6 139902005 139902509 - TEC TEC MGP_C3HHeJ_T0079848.1 MGP_C3HHeJ_G0030992.1 mouse_genomes_project 6 127150094 127156854 + MGP_C3HHeJ_P0079848 Vamp1 protein_coding protein_coding MGP_C3HHeJ_T0079849.1 MGP_C3HHeJ_G0030992.1 mouse_genomes_project 6 127150124 127156711 + MGP_C3HHeJ_P0079849 Vamp1 protein_coding protein_coding MGP_C3HHeJ_T0079850.1 MGP_C3HHeJ_G0030992.1 mouse_genomes_project 6 127150124 127176074 + MGP_C3HHeJ_P0079850 Vamp1 protein_coding protein_coding MGP_C3HHeJ_T0079851.1 MGP_C3HHeJ_G0030992.1 mouse_genomes_project 6 127153124 127156203 + MGP_C3HHeJ_P0079851 Vamp1 protein_coding protein_coding MGP_C3HHeJ_T0079853.1 MGP_C3HHeJ_G0030992.1 mouse_genomes_project 6 127166155 127180784 + Vamp1 protein_coding processed_transcript MGP_C3HHeJ_T0079854.1 MGP_C3HHeJ_G0030992.1 mouse_genomes_project 6 127166155 127174759 + Vamp1 protein_coding processed_transcript MGP_C3HHeJ_T0008453.1 MGP_C3HHeJ_G0006837.1 mouse_genomes_project 6 28724242 28726021 + Gm13833 lincRNA lincRNA MGP_C3HHeJ_T0097915.1 MGP_C3HHeJ_G0036127.1 mouse_genomes_project 6 45764201 45764746 - pseudogene pseudogene MGP_C3HHeJ_T0015342.1 MGP_C3HHeJ_G0013446.1 mouse_genomes_project 6 117251487 117251648 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002099.1 MGP_C3HHeJ_G0002020.1 mouse_genomes_project 6 126212353 126225957 - TEC TEC MGP_C3HHeJ_T0101259.1 MGP_C3HHeJ_G0039375.1 mouse_genomes_project 6 148762517 148777952 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101260.1 MGP_C3HHeJ_G0039375.1 mouse_genomes_project 6 148762518 148767162 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101261.1 MGP_C3HHeJ_G0039375.1 mouse_genomes_project 6 148765229 148766971 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101262.1 MGP_C3HHeJ_G0039375.1 mouse_genomes_project 6 148766347 148767088 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0015164.1 MGP_C3HHeJ_G0013268.1 mouse_genomes_project 6 49090227 49090599 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077814.1 MGP_C3HHeJ_G0030578.1 mouse_genomes_project 6 67560611 67569338 + MGP_C3HHeJ_P0077814 Mkrn2os protein_coding protein_coding MGP_C3HHeJ_T0077815.1 MGP_C3HHeJ_G0030578.1 mouse_genomes_project 6 67560638 67570927 + MGP_C3HHeJ_P0077815 Mkrn2os protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018072.1 MGP_C3HHeJ_G0015403.1 mouse_genomes_project 6 117974303 118020704 - E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_C3HHeJ_T0018073.1 MGP_C3HHeJ_G0015403.1 mouse_genomes_project 6 117974818 118020648 - E230016M11Rik processed_transcript retained_intron MGP_C3HHeJ_T0018074.1 MGP_C3HHeJ_G0015403.1 mouse_genomes_project 6 117974860 117978198 - E230016M11Rik processed_transcript retained_intron MGP_C3HHeJ_T0018075.1 MGP_C3HHeJ_G0015403.1 mouse_genomes_project 6 117991196 118020698 - E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_C3HHeJ_T0077041.1 MGP_C3HHeJ_G0030400.1 mouse_genomes_project 6 47076695 47083537 + MGP_C3HHeJ_P0077041 Gimap4 protein_coding protein_coding MGP_C3HHeJ_T0077042.1 MGP_C3HHeJ_G0030400.1 mouse_genomes_project 6 47076724 47084219 + MGP_C3HHeJ_P0077042 Gimap4 protein_coding protein_coding MGP_C3HHeJ_T0077043.1 MGP_C3HHeJ_G0030400.1 mouse_genomes_project 6 47076724 47084219 + MGP_C3HHeJ_P0077043 Gimap4 protein_coding protein_coding MGP_C3HHeJ_T0077044.1 MGP_C3HHeJ_G0030400.1 mouse_genomes_project 6 47076727 47084036 + MGP_C3HHeJ_P0077044 Gimap4 protein_coding protein_coding MGP_C3HHeJ_T0077045.1 MGP_C3HHeJ_G0030400.1 mouse_genomes_project 6 47076727 47084216 + MGP_C3HHeJ_P0077045 Gimap4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077046.1 MGP_C3HHeJ_G0030400.1 mouse_genomes_project 6 47076728 47084219 + MGP_C3HHeJ_P0077046 Gimap4 protein_coding protein_coding MGP_C3HHeJ_T0076012.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14308241 14344187 + MGP_C3HHeJ_P0076012 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076013.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14308251 14343292 + MGP_C3HHeJ_P0076013 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076014.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14308316 14342159 + MGP_C3HHeJ_P0076014 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076015.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14308317 14331774 + Cav1 protein_coding processed_transcript MGP_C3HHeJ_T0076016.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14308317 14342214 + MGP_C3HHeJ_P0076016 Cav1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076017.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14308329 14311359 + MGP_C3HHeJ_P0076017 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076018.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14310203 14342016 + MGP_C3HHeJ_P0076018 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076019.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14310433 14342382 + MGP_C3HHeJ_P0076019 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076020.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14310795 14344315 + MGP_C3HHeJ_P0076020 Cav1 protein_coding protein_coding MGP_C3HHeJ_T0076021.1 MGP_C3HHeJ_G0030165.1 mouse_genomes_project 6 14310878 14331765 + Cav1 protein_coding processed_transcript MGP_C3HHeJ_T0002606.1 MGP_C3HHeJ_G0002500.1 mouse_genomes_project 6 38858253 38858910 + MGP_C3HHeJ_P0002606 Trbv1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002668.1 MGP_C3HHeJ_G0002550.1 mouse_genomes_project 6 39069130 39069419 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0080501.1 MGP_C3HHeJ_G0031170.1 mouse_genomes_project 6 145747552 145761632 - MGP_C3HHeJ_P0080501 Ldhb protein_coding protein_coding MGP_C3HHeJ_T0080502.1 MGP_C3HHeJ_G0031170.1 mouse_genomes_project 6 145747653 145768246 - MGP_C3HHeJ_P0080502 Ldhb protein_coding protein_coding MGP_C3HHeJ_T0080503.1 MGP_C3HHeJ_G0031170.1 mouse_genomes_project 6 145752784 145768050 - MGP_C3HHeJ_P0080503 Ldhb protein_coding protein_coding MGP_C3HHeJ_T0101245.1 MGP_C3HHeJ_G0039368.1 mouse_genomes_project 6 40128410 40129259 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101246.1 MGP_C3HHeJ_G0039368.1 mouse_genomes_project 6 40128818 40129178 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0008443.1 MGP_C3HHeJ_G0006830.1 mouse_genomes_project 6 27523551 27534258 + Smkr-ps lincRNA lincRNA MGP_C3HHeJ_T0008444.1 MGP_C3HHeJ_G0006830.1 mouse_genomes_project 6 27523553 27534511 + Smkr-ps lincRNA lincRNA MGP_C3HHeJ_T0079607.1 MGP_C3HHeJ_G0030950.1 mouse_genomes_project 6 125829730 125883307 + MGP_C3HHeJ_P0079607 Vmn2r26 protein_coding protein_coding MGP_C3HHeJ_T0015461.1 MGP_C3HHeJ_G0013565.1 mouse_genomes_project 6 143624660 143625145 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080603.1 MGP_C3HHeJ_G0031184.1 mouse_genomes_project 6 148739823 149000931 - MGP_C3HHeJ_P0080603 Lmntd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080604.1 MGP_C3HHeJ_G0031184.1 mouse_genomes_project 6 148768380 148824875 - MGP_C3HHeJ_P0080604 Lmntd1 protein_coding protein_coding MGP_C3HHeJ_T0080605.1 MGP_C3HHeJ_G0031184.1 mouse_genomes_project 6 148772982 148808325 - MGP_C3HHeJ_P0080605 Lmntd1 protein_coding protein_coding MGP_C3HHeJ_T0080606.1 MGP_C3HHeJ_G0031184.1 mouse_genomes_project 6 148803333 148807481 - MGP_C3HHeJ_P0080606 Lmntd1 protein_coding protein_coding MGP_C3HHeJ_T0080607.1 MGP_C3HHeJ_G0031184.1 mouse_genomes_project 6 148924681 149000977 - Lmntd1 protein_coding processed_transcript MGP_C3HHeJ_T0080608.1 MGP_C3HHeJ_G0031184.1 mouse_genomes_project 6 148965158 149000627 - Lmntd1 protein_coding processed_transcript MGP_C3HHeJ_T0080113.1 MGP_C3HHeJ_G0031061.1 mouse_genomes_project 6 132037575 132046850 - MGP_C3HHeJ_P0080113 Gm156 protein_coding protein_coding MGP_C3HHeJ_T0080114.1 MGP_C3HHeJ_G0031061.1 mouse_genomes_project 6 132037583 132073414 - MGP_C3HHeJ_P0080114 Gm156 protein_coding protein_coding MGP_C3HHeJ_T0078524.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95191680 95299638 - MGP_C3HHeJ_P0078524 Mgll protein_coding protein_coding MGP_C3HHeJ_T0078525.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95194047 95300295 - MGP_C3HHeJ_P0078525 Mgll protein_coding protein_coding MGP_C3HHeJ_T0078526.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95194163 95299712 - MGP_C3HHeJ_P0078526 Mgll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078527.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95194203 95196905 - Mgll protein_coding retained_intron MGP_C3HHeJ_T0078528.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95196651 95300308 - MGP_C3HHeJ_P0078528 Mgll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078529.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95258147 95300193 - MGP_C3HHeJ_P0078529 Mgll protein_coding protein_coding MGP_C3HHeJ_T0078530.1 MGP_C3HHeJ_G0030718.1 mouse_genomes_project 6 95298746 95300319 - Mgll protein_coding processed_transcript MGP_C3HHeJ_T0076584.1 MGP_C3HHeJ_G0030267.1 mouse_genomes_project 6 33053182 33067274 - MGP_C3HHeJ_P0076584 Fam180a protein_coding protein_coding MGP_C3HHeJ_T0002120.1 MGP_C3HHeJ_G0002041.1 mouse_genomes_project 6 137162076 137162772 - TEC TEC MGP_C3HHeJ_T0075898.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5088733 5293217 + MGP_C3HHeJ_P0075898 Umad1 protein_coding protein_coding MGP_C3HHeJ_T0075899.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5088795 5259995 + MGP_C3HHeJ_P0075899 Umad1 protein_coding protein_coding MGP_C3HHeJ_T0075900.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5088827 5261621 + MGP_C3HHeJ_P0075900 Umad1 protein_coding protein_coding MGP_C3HHeJ_T0075901.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5088873 5260136 + MGP_C3HHeJ_P0075901 Umad1 protein_coding protein_coding MGP_C3HHeJ_T0075902.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5088875 5261617 + MGP_C3HHeJ_P0075902 Umad1 protein_coding protein_coding MGP_C3HHeJ_T0075903.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5088889 5108458 + Umad1 protein_coding processed_transcript MGP_C3HHeJ_T0075905.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5099911 5261624 + MGP_C3HHeJ_P0075905 Umad1 protein_coding protein_coding MGP_C3HHeJ_T0075906.1 MGP_C3HHeJ_G0030145.1 mouse_genomes_project 6 5252534 5261095 + Umad1 protein_coding processed_transcript MGP_C3HHeJ_T0078314.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91697839 91709361 - Nr2c2 protein_coding processed_transcript MGP_C3HHeJ_T0078315.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91699076 91780995 - MGP_C3HHeJ_P0078315 Nr2c2 protein_coding protein_coding MGP_C3HHeJ_T0078316.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91704905 91739463 - MGP_C3HHeJ_P0078316 Nr2c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0078317.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91705868 91779952 - MGP_C3HHeJ_P0078317 Nr2c2 protein_coding protein_coding MGP_C3HHeJ_T0078318.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91714710 91716554 - Nr2c2 protein_coding retained_intron MGP_C3HHeJ_T0078319.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91716927 91727811 - Nr2c2 protein_coding processed_transcript MGP_C3HHeJ_T0078320.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91737025 91740621 - Nr2c2 protein_coding retained_intron MGP_C3HHeJ_T0078321.1 MGP_C3HHeJ_G0030673.1 mouse_genomes_project 6 91739426 91741222 - MGP_C3HHeJ_P0078321 Nr2c2 protein_coding protein_coding MGP_C3HHeJ_T0001941.1 MGP_C3HHeJ_G0001863.1 mouse_genomes_project 6 44378468 44382837 + TEC TEC MGP_C3HHeJ_T0015264.1 MGP_C3HHeJ_G0013368.1 mouse_genomes_project 6 88907585 88908020 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018093.1 MGP_C3HHeJ_G0015411.1 mouse_genomes_project 6 131801023 131802890 - 1700101I11Rik processed_transcript TEC MGP_C3HHeJ_T0018094.1 MGP_C3HHeJ_G0015411.1 mouse_genomes_project 6 131801167 131802358 - 1700101I11Rik processed_transcript antisense MGP_C3HHeJ_T0079958.1 MGP_C3HHeJ_G0031018.1 mouse_genomes_project 6 129760279 129844417 - MGP_C3HHeJ_P0079958 Prmt8 protein_coding protein_coding MGP_C3HHeJ_T0098586.1 MGP_C3HHeJ_G0036781.1 mouse_genomes_project 6 39058907 39069174 + Gm37610 sense_overlapping sense_overlapping MGP_C3HHeJ_T0100754.1 MGP_C3HHeJ_G0038948.1 mouse_genomes_project 6 49028345 49028476 - Gm26289 snoRNA snoRNA MGP_C3HHeJ_T0001987.1 MGP_C3HHeJ_G0001908.1 mouse_genomes_project 6 81648828 81651495 - TEC TEC MGP_C3HHeJ_T0008642.1 MGP_C3HHeJ_G0006979.1 mouse_genomes_project 6 126201952 126204596 + Gm44006 lincRNA lincRNA MGP_C3HHeJ_T0079104.1 MGP_C3HHeJ_G0030829.1 mouse_genomes_project 6 102317724 102327937 + MGP_C3HHeJ_P0079104 Mrpl19 protein_coding protein_coding MGP_C3HHeJ_T0079105.1 MGP_C3HHeJ_G0030829.1 mouse_genomes_project 6 102318041 102321261 + Mrpl19 protein_coding processed_transcript MGP_C3HHeJ_T0079106.1 MGP_C3HHeJ_G0030829.1 mouse_genomes_project 6 102320824 102322681 + Mrpl19 protein_coding retained_intron MGP_C3HHeJ_T0008553.1 MGP_C3HHeJ_G0006908.1 mouse_genomes_project 6 69587189 69588685 + 1700015O11Rik lincRNA lincRNA MGP_C3HHeJ_T0076859.1 MGP_C3HHeJ_G0030345.1 mouse_genomes_project 6 40386659 40403177 - MGP_C3HHeJ_P0076859 Epha1 protein_coding protein_coding MGP_C3HHeJ_T0076860.1 MGP_C3HHeJ_G0030345.1 mouse_genomes_project 6 40386888 40403177 - MGP_C3HHeJ_P0076860 Epha1 protein_coding protein_coding MGP_C3HHeJ_T0076861.1 MGP_C3HHeJ_G0030345.1 mouse_genomes_project 6 40396950 40403144 - Epha1 protein_coding retained_intron MGP_C3HHeJ_T0079708.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126713622 126728088 - MGP_C3HHeJ_P0079708 Usp5 protein_coding protein_coding MGP_C3HHeJ_T0079709.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126713641 126728039 - MGP_C3HHeJ_P0079709 Usp5 protein_coding protein_coding MGP_C3HHeJ_T0079710.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126714023 126717241 - Usp5 protein_coding retained_intron MGP_C3HHeJ_T0079711.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126715849 126716497 - Usp5 protein_coding retained_intron MGP_C3HHeJ_T0079712.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126720378 126722073 - Usp5 protein_coding retained_intron MGP_C3HHeJ_T0079713.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126721222 126728012 - MGP_C3HHeJ_P0079713 Usp5 protein_coding protein_coding MGP_C3HHeJ_T0079714.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126721330 126722227 - Usp5 protein_coding retained_intron MGP_C3HHeJ_T0079715.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126721446 126722804 - Usp5 protein_coding retained_intron MGP_C3HHeJ_T0079716.1 MGP_C3HHeJ_G0030971.1 mouse_genomes_project 6 126722739 126727499 - MGP_C3HHeJ_P0079716 Usp5 protein_coding protein_coding MGP_C3HHeJ_T0000169.1 MGP_C3HHeJ_G0000129.1 mouse_genomes_project 6 116098523 116099070 + MGP_C3HHeJ_P0000169 Igkv4-91 IG_V_gene IG_V_gene MGP_C3HHeJ_T0015346.1 MGP_C3HHeJ_G0013450.1 mouse_genomes_project 6 117453860 117455116 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076798.1 MGP_C3HHeJ_G0030328.1 mouse_genomes_project 6 39689333 39718412 - MGP_C3HHeJ_P0076798 Trpv5 protein_coding protein_coding MGP_C3HHeJ_T0076799.1 MGP_C3HHeJ_G0030328.1 mouse_genomes_project 6 39690290 39718298 - MGP_C3HHeJ_P0076799 Trpv5 protein_coding protein_coding MGP_C3HHeJ_T0101426.1 MGP_C3HHeJ_G0039455.1 mouse_genomes_project 6 41147944 41190252 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101427.1 MGP_C3HHeJ_G0039455.1 mouse_genomes_project 6 41188113 41190017 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0099552.1 MGP_C3HHeJ_G0037746.1 mouse_genomes_project 6 132569429 132569503 + Gm22621 snRNA snRNA MGP_C3HHeJ_T0101439.1 MGP_C3HHeJ_G0039457.1 mouse_genomes_project 6 56514223 56514440 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0008583.1 MGP_C3HHeJ_G0006932.1 mouse_genomes_project 6 93420809 93452391 - lincRNA lincRNA MGP_C3HHeJ_T0100787.1 MGP_C3HHeJ_G0038981.1 mouse_genomes_project 6 117064604 117064744 + Gm25910 snoRNA snoRNA MGP_C3HHeJ_T0078367.1 MGP_C3HHeJ_G0030682.1 mouse_genomes_project 6 92431020 92442403 + MGP_C3HHeJ_P0078367 Chchd4 protein_coding protein_coding MGP_C3HHeJ_T0078368.1 MGP_C3HHeJ_G0030682.1 mouse_genomes_project 6 92431117 92432971 + Chchd4 protein_coding retained_intron MGP_C3HHeJ_T0076375.1 MGP_C3HHeJ_G0030232.1 mouse_genomes_project 6 27962587 28020548 + MGP_C3HHeJ_P0076375 Klhdc10 protein_coding protein_coding MGP_C3HHeJ_T0076376.1 MGP_C3HHeJ_G0030232.1 mouse_genomes_project 6 27962713 28022444 + MGP_C3HHeJ_P0076376 Klhdc10 protein_coding protein_coding MGP_C3HHeJ_T0076377.1 MGP_C3HHeJ_G0030232.1 mouse_genomes_project 6 27962717 28017822 + MGP_C3HHeJ_P0076377 Klhdc10 protein_coding protein_coding MGP_C3HHeJ_T0076378.1 MGP_C3HHeJ_G0030232.1 mouse_genomes_project 6 27979811 28014707 + MGP_C3HHeJ_P0076378 Klhdc10 protein_coding protein_coding MGP_C3HHeJ_T0076379.1 MGP_C3HHeJ_G0030232.1 mouse_genomes_project 6 28010963 28018101 + Klhdc10 protein_coding retained_intron MGP_C3HHeJ_T0008576.1 MGP_C3HHeJ_G0006926.1 mouse_genomes_project 6 85134035 85151865 + Gm44197 lincRNA lincRNA MGP_C3HHeJ_T0008545.1 MGP_C3HHeJ_G0006902.1 mouse_genomes_project 6 65519579 65532186 - Gm9946 lincRNA lincRNA MGP_C3HHeJ_T0008546.1 MGP_C3HHeJ_G0006902.1 mouse_genomes_project 6 65523695 65532186 - Gm9946 lincRNA lincRNA MGP_C3HHeJ_T0008547.1 MGP_C3HHeJ_G0006902.1 mouse_genomes_project 6 65523833 65524217 - Gm9946 lincRNA lincRNA MGP_C3HHeJ_T0015445.1 MGP_C3HHeJ_G0013549.1 mouse_genomes_project 6 135881069 135881718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077569.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156467 63443234 + MGP_C3HHeJ_P0077569 Erc1 protein_coding protein_coding MGP_C3HHeJ_T0077570.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156484 63447735 + MGP_C3HHeJ_P0077570 Erc1 protein_coding protein_coding MGP_C3HHeJ_T0077571.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156500 63443304 + MGP_C3HHeJ_P0077571 Erc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077572.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156502 63401003 + MGP_C3HHeJ_P0077572 Erc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0077573.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156519 63443974 + MGP_C3HHeJ_P0077573 Erc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077574.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156532 63236405 + MGP_C3HHeJ_P0077574 Erc1 protein_coding protein_coding MGP_C3HHeJ_T0077575.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156545 63443019 + MGP_C3HHeJ_P0077575 Erc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077576.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63156575 63444823 + MGP_C3HHeJ_P0077576 Erc1 protein_coding protein_coding MGP_C3HHeJ_T0077577.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63180340 63182816 + Erc1 protein_coding retained_intron MGP_C3HHeJ_T0077578.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63181574 63447727 + MGP_C3HHeJ_P0077578 Erc1 protein_coding protein_coding MGP_C3HHeJ_T0077579.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63210810 63288593 + Erc1 protein_coding processed_transcript MGP_C3HHeJ_T0077580.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63265610 63443539 + MGP_C3HHeJ_P0077580 Erc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077581.1 MGP_C3HHeJ_G0030533.1 mouse_genomes_project 6 63392334 63397144 + Erc1 protein_coding retained_intron MGP_C3HHeJ_T0079140.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106317008 107455587 + MGP_C3HHeJ_P0079140 Ctnna2 protein_coding protein_coding MGP_C3HHeJ_T0079141.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106317008 107455587 + MGP_C3HHeJ_P0079141 Ctnna2 protein_coding protein_coding MGP_C3HHeJ_T0079142.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106317122 106371198 + Ctnna2 protein_coding processed_transcript MGP_C3HHeJ_T0079143.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106317147 106698425 + MGP_C3HHeJ_P0079143 Ctnna2 protein_coding protein_coding MGP_C3HHeJ_T0079144.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106317147 107454674 + MGP_C3HHeJ_P0079144 Ctnna2 protein_coding protein_coding MGP_C3HHeJ_T0079145.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106317157 107455584 + MGP_C3HHeJ_P0079145 Ctnna2 protein_coding protein_coding MGP_C3HHeJ_T0079146.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 106383241 106692835 + MGP_C3HHeJ_P0079146 Ctnna2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079151.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 107173098 107418340 + MGP_C3HHeJ_P0079151 Ctnna2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079152.1 MGP_C3HHeJ_G0030841.1 mouse_genomes_project 6 107431275 107454468 + Ctnna2 protein_coding retained_intron MGP_C3HHeJ_T0078744.1 MGP_C3HHeJ_G0030758.1 mouse_genomes_project 6 97738866 97746958 - MGP_C3HHeJ_P0078744 Snrpg protein_coding protein_coding MGP_C3HHeJ_T0078745.1 MGP_C3HHeJ_G0030758.1 mouse_genomes_project 6 97739287 97746691 - Snrpg protein_coding processed_transcript MGP_C3HHeJ_T0078746.1 MGP_C3HHeJ_G0030758.1 mouse_genomes_project 6 97739336 97746658 - Snrpg protein_coding processed_transcript MGP_C3HHeJ_T0078747.1 MGP_C3HHeJ_G0030758.1 mouse_genomes_project 6 97741436 97746720 - Snrpg protein_coding retained_intron MGP_C3HHeJ_T0099512.1 MGP_C3HHeJ_G0037706.1 mouse_genomes_project 6 37144301 37144400 - Gm26008 snRNA snRNA MGP_C3HHeJ_T0015232.1 MGP_C3HHeJ_G0013336.1 mouse_genomes_project 6 74249595 74250073 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076893.1 MGP_C3HHeJ_G0030362.1 mouse_genomes_project 6 40961479 40962412 + MGP_C3HHeJ_P0076893 Olfr447 protein_coding protein_coding MGP_C3HHeJ_T0075847.1 MGP_C3HHeJ_G0030130.1 mouse_genomes_project 6 2048413 2085275 - MGP_C3HHeJ_P0075847 Pon2 protein_coding protein_coding MGP_C3HHeJ_T0075848.1 MGP_C3HHeJ_G0030130.1 mouse_genomes_project 6 2054419 2085150 - Pon2 protein_coding retained_intron MGP_C3HHeJ_T0075849.1 MGP_C3HHeJ_G0030130.1 mouse_genomes_project 6 2058161 2074070 - Pon2 protein_coding processed_transcript MGP_C3HHeJ_T0075850.1 MGP_C3HHeJ_G0030130.1 mouse_genomes_project 6 2062558 2065396 - Pon2 protein_coding retained_intron MGP_C3HHeJ_T0078032.1 MGP_C3HHeJ_G0030615.1 mouse_genomes_project 6 70041865 70069240 + MGP_C3HHeJ_P0078032 Lhfpl4 protein_coding protein_coding MGP_C3HHeJ_T0076735.1 MGP_C3HHeJ_G0030300.1 mouse_genomes_project 6 37805207 38185554 + MGP_C3HHeJ_P0076735 Tmem178b protein_coding protein_coding MGP_C3HHeJ_T0076736.1 MGP_C3HHeJ_G0030300.1 mouse_genomes_project 6 38039864 38178916 + MGP_C3HHeJ_P0076736 Tmem178b protein_coding protein_coding MGP_C3HHeJ_T0076737.1 MGP_C3HHeJ_G0030300.1 mouse_genomes_project 6 38179379 38185629 + Tmem178b protein_coding retained_intron MGP_C3HHeJ_T0004902.1 MGP_C3HHeJ_G0004199.1 mouse_genomes_project 6 69145146 69197733 - Gm15083 antisense antisense MGP_C3HHeJ_T0001926.1 MGP_C3HHeJ_G0001848.1 mouse_genomes_project 6 43369110 43371652 + TEC TEC MGP_C3HHeJ_T0015196.1 MGP_C3HHeJ_G0013300.1 mouse_genomes_project 6 62377191 62377537 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077894.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69490229 69493953 + MGP_C3HHeJ_P0077894 Ghrl protein_coding protein_coding MGP_C3HHeJ_T0077895.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69490261 69493940 + MGP_C3HHeJ_P0077895 Ghrl protein_coding protein_coding MGP_C3HHeJ_T0077896.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69490651 69493948 + MGP_C3HHeJ_P0077896 Ghrl protein_coding protein_coding MGP_C3HHeJ_T0077897.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69490655 69490933 + Ghrl protein_coding retained_intron MGP_C3HHeJ_T0077898.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69490662 69493900 + MGP_C3HHeJ_P0077898 Ghrl protein_coding protein_coding MGP_C3HHeJ_T0077899.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69490680 69493822 + MGP_C3HHeJ_P0077899 Ghrl protein_coding protein_coding MGP_C3HHeJ_T0077900.1 MGP_C3HHeJ_G0030592.1 mouse_genomes_project 6 69492379 69493953 + MGP_C3HHeJ_P0077900 Ghrl protein_coding protein_coding MGP_C3HHeJ_T0005004.1 MGP_C3HHeJ_G0004263.1 mouse_genomes_project 6 124481212 124489835 - Gm26826 antisense antisense MGP_C3HHeJ_T0000299.1 MGP_C3HHeJ_G0000249.1 mouse_genomes_project 6 116897741 116898207 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076538.1 MGP_C3HHeJ_G0030259.1 mouse_genomes_project 6 32576153 32585473 + Tmem140 protein_coding processed_transcript MGP_C3HHeJ_T0076539.1 MGP_C3HHeJ_G0030259.1 mouse_genomes_project 6 32576153 32588829 + MGP_C3HHeJ_P0076539 Tmem140 protein_coding protein_coding MGP_C3HHeJ_T0076540.1 MGP_C3HHeJ_G0030259.1 mouse_genomes_project 6 32576269 32586499 + MGP_C3HHeJ_P0076540 Tmem140 protein_coding protein_coding MGP_C3HHeJ_T0076541.1 MGP_C3HHeJ_G0030259.1 mouse_genomes_project 6 32580034 32582711 + Tmem140 protein_coding processed_transcript MGP_C3HHeJ_T0076542.1 MGP_C3HHeJ_G0030259.1 mouse_genomes_project 6 32580066 32586624 + MGP_C3HHeJ_P0076542 Tmem140 protein_coding protein_coding MGP_C3HHeJ_T0076545.1 MGP_C3HHeJ_G0030259.1 mouse_genomes_project 6 32586599 32587441 + Tmem140 protein_coding processed_transcript MGP_C3HHeJ_T0099541.1 MGP_C3HHeJ_G0037735.1 mouse_genomes_project 6 119156214 119156314 + Gm23625 snRNA snRNA MGP_C3HHeJ_T0080642.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149983092 149999707 + MGP_C3HHeJ_P0080642 Fgfr1op2 protein_coding protein_coding MGP_C3HHeJ_T0080643.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149983752 150006518 + MGP_C3HHeJ_P0080643 Fgfr1op2 protein_coding protein_coding MGP_C3HHeJ_T0080644.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149983752 150006518 + MGP_C3HHeJ_P0080644 Fgfr1op2 protein_coding protein_coding MGP_C3HHeJ_T0080645.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149983814 149999707 + MGP_C3HHeJ_P0080645 Fgfr1op2 protein_coding protein_coding MGP_C3HHeJ_T0080646.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149983833 149996830 + Fgfr1op2 protein_coding processed_transcript MGP_C3HHeJ_T0080647.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149983835 149994122 + Fgfr1op2 protein_coding retained_intron MGP_C3HHeJ_T0080648.1 MGP_C3HHeJ_G0031191.1 mouse_genomes_project 6 149995133 150004163 + Fgfr1op2 protein_coding processed_transcript MGP_C3HHeJ_T0015373.1 MGP_C3HHeJ_G0013477.1 mouse_genomes_project 6 119964639 119966040 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080315.1 MGP_C3HHeJ_G0031135.1 mouse_genomes_project 6 139966950 139983268 - MGP_C3HHeJ_P0080315 Erp27 protein_coding protein_coding MGP_C3HHeJ_T0080316.1 MGP_C3HHeJ_G0031135.1 mouse_genomes_project 6 139969402 139983268 - Erp27 protein_coding retained_intron MGP_C3HHeJ_T0080317.1 MGP_C3HHeJ_G0031135.1 mouse_genomes_project 6 139980754 139983228 - Erp27 protein_coding retained_intron MGP_C3HHeJ_T0018050.1 MGP_C3HHeJ_G0015396.1 mouse_genomes_project 6 59269429 59403496 - processed_transcript lincRNA MGP_C3HHeJ_T0018051.1 MGP_C3HHeJ_G0015396.1 mouse_genomes_project 6 59396117 59403487 - processed_transcript lincRNA MGP_C3HHeJ_T0018052.1 MGP_C3HHeJ_G0015396.1 mouse_genomes_project 6 59396933 59403460 - processed_transcript lincRNA MGP_C3HHeJ_T0018053.1 MGP_C3HHeJ_G0015396.1 mouse_genomes_project 6 59396949 59403469 - processed_transcript lincRNA MGP_C3HHeJ_T0018054.1 MGP_C3HHeJ_G0015396.1 mouse_genomes_project 6 59400863 59403496 - processed_transcript retained_intron MGP_C3HHeJ_T0079130.1 MGP_C3HHeJ_G0030836.1 mouse_genomes_project 6 105909638 105912757 - MGP_C3HHeJ_P0079130 Reg3a protein_coding protein_coding MGP_C3HHeJ_T0079139.1 MGP_C3HHeJ_G0030840.1 mouse_genomes_project 6 106083409 106084296 - MGP_C3HHeJ_P0079139 Gm5580 protein_coding protein_coding MGP_C3HHeJ_T0076111.1 MGP_C3HHeJ_G0030180.1 mouse_genomes_project 6 19544031 19593235 - MGP_C3HHeJ_P0076111 Fam3c protein_coding protein_coding MGP_C3HHeJ_T0076112.1 MGP_C3HHeJ_G0030180.1 mouse_genomes_project 6 19544598 19593314 - MGP_C3HHeJ_P0076112 Fam3c protein_coding protein_coding MGP_C3HHeJ_T0076113.1 MGP_C3HHeJ_G0030180.1 mouse_genomes_project 6 19544609 19565577 - Fam3c protein_coding processed_transcript MGP_C3HHeJ_T0076114.1 MGP_C3HHeJ_G0030180.1 mouse_genomes_project 6 19545476 19593210 - MGP_C3HHeJ_P0076114 Fam3c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0076115.1 MGP_C3HHeJ_G0030180.1 mouse_genomes_project 6 19558421 19580982 - MGP_C3HHeJ_P0076115 Fam3c protein_coding protein_coding MGP_C3HHeJ_T0076682.1 MGP_C3HHeJ_G0030289.1 mouse_genomes_project 6 36956663 36991404 - MGP_C3HHeJ_P0076682 Parp12 protein_coding protein_coding MGP_C3HHeJ_T0076683.1 MGP_C3HHeJ_G0030289.1 mouse_genomes_project 6 36959257 36961335 - Parp12 protein_coding retained_intron MGP_C3HHeJ_T0001976.1 MGP_C3HHeJ_G0001897.1 mouse_genomes_project 6 69807608 69810719 - TEC TEC MGP_C3HHeJ_T0100741.1 MGP_C3HHeJ_G0038935.1 mouse_genomes_project 6 18170313 18170444 - Gm23960 snoRNA snoRNA MGP_C3HHeJ_T0015415.1 MGP_C3HHeJ_G0013519.1 mouse_genomes_project 6 129416604 129417137 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000290.1 MGP_C3HHeJ_G0000240.1 mouse_genomes_project 6 116575574 116576369 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015258.1 MGP_C3HHeJ_G0013362.1 mouse_genomes_project 6 85815504 85815756 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080297.1 MGP_C3HHeJ_G0031129.1 mouse_genomes_project 6 139823619 139825452 + MGP_C3HHeJ_P0080297 H2afj protein_coding protein_coding MGP_C3HHeJ_T0080298.1 MGP_C3HHeJ_G0031129.1 mouse_genomes_project 6 139823708 139825166 + MGP_C3HHeJ_P0080298 H2afj protein_coding protein_coding MGP_C3HHeJ_T0079927.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 128976581 129005092 + D6Wsu163e protein_coding retained_intron MGP_C3HHeJ_T0079928.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 128976585 129011382 + MGP_C3HHeJ_P0079928 D6Wsu163e protein_coding protein_coding MGP_C3HHeJ_T0079929.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 128976590 128979830 + D6Wsu163e protein_coding retained_intron MGP_C3HHeJ_T0079930.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 128976594 128984698 + D6Wsu163e protein_coding retained_intron MGP_C3HHeJ_T0079931.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 128976648 128982019 + MGP_C3HHeJ_P0079931 D6Wsu163e protein_coding protein_coding MGP_C3HHeJ_T0079932.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 128987492 128992295 + D6Wsu163e protein_coding retained_intron MGP_C3HHeJ_T0079933.1 MGP_C3HHeJ_G0031011.1 mouse_genomes_project 6 129009844 129011039 + D6Wsu163e protein_coding retained_intron MGP_C3HHeJ_T0005001.1 MGP_C3HHeJ_G0004260.1 mouse_genomes_project 6 122348831 122349797 + Gm43916 antisense antisense MGP_C3HHeJ_T0015065.1 MGP_C3HHeJ_G0013169.1 mouse_genomes_project 6 7782796 7788968 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002102.1 MGP_C3HHeJ_G0002023.1 mouse_genomes_project 6 128573818 128574348 - TEC TEC MGP_C3HHeJ_T0078640.1 MGP_C3HHeJ_G0030742.1 mouse_genomes_project 6 96738486 96743780 + MGP_C3HHeJ_P0078640 Gkn1 protein_coding protein_coding MGP_C3HHeJ_T0002609.1 MGP_C3HHeJ_G0002503.1 mouse_genomes_project 6 39036843 39037336 + MGP_C3HHeJ_P0002609 Trbv4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0015353.1 MGP_C3HHeJ_G0013457.1 mouse_genomes_project 6 117833219 117833684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0080739.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152290282 152291445 - Caprin2 protein_coding retained_intron MGP_C3HHeJ_T0080740.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152290282 152347779 - MGP_C3HHeJ_P0080740 Caprin2 protein_coding protein_coding MGP_C3HHeJ_T0080741.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152290283 152299893 - MGP_C3HHeJ_P0080741 Caprin2 protein_coding protein_coding MGP_C3HHeJ_T0080742.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152290283 152347692 - MGP_C3HHeJ_P0080742 Caprin2 protein_coding protein_coding MGP_C3HHeJ_T0080743.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152291827 152297681 - Caprin2 protein_coding retained_intron MGP_C3HHeJ_T0080744.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152292355 152299864 - Caprin2 protein_coding processed_transcript MGP_C3HHeJ_T0080745.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152296106 152308945 - Caprin2 protein_coding processed_transcript MGP_C3HHeJ_T0080746.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152329453 152347001 - MGP_C3HHeJ_P0080746 Caprin2 protein_coding protein_coding MGP_C3HHeJ_T0080747.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152336078 152342362 - Caprin2 protein_coding retained_intron MGP_C3HHeJ_T0080748.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152339212 152347704 - Caprin2 protein_coding processed_transcript MGP_C3HHeJ_T0080749.1 MGP_C3HHeJ_G0031209.1 mouse_genomes_project 6 152345711 152347151 - Caprin2 protein_coding processed_transcript MGP_C3HHeJ_T0076057.1 MGP_C3HHeJ_G0030169.1 mouse_genomes_project 6 15025887 15072066 - MGP_C3HHeJ_P0076057 Wnt2 protein_coding protein_coding MGP_C3HHeJ_T0100737.1 MGP_C3HHeJ_G0038931.1 mouse_genomes_project 6 4684245 4684374 + Gm22276 snoRNA snoRNA MGP_C3HHeJ_T0000285.1 MGP_C3HHeJ_G0000235.1 mouse_genomes_project 6 116243565 116245153 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0075822.1 MGP_C3HHeJ_G0030126.1 mouse_genomes_project 6 1499823 1512872 + MGP_C3HHeJ_P0075822 protein_coding protein_coding MGP_C3HHeJ_T0075823.1 MGP_C3HHeJ_G0030126.1 mouse_genomes_project 6 1499823 1512875 + MGP_C3HHeJ_P0075823 protein_coding protein_coding MGP_C3HHeJ_T0075824.1 MGP_C3HHeJ_G0030126.1 mouse_genomes_project 6 1499923 1512877 + MGP_C3HHeJ_P0075824 protein_coding protein_coding MGP_C3HHeJ_T0077525.1 MGP_C3HHeJ_G0030529.1 mouse_genomes_project 6 62681821 62777925 + MGP_C3HHeJ_P0077525 B4galnt3 protein_coding protein_coding MGP_C3HHeJ_T0077526.1 MGP_C3HHeJ_G0030529.1 mouse_genomes_project 6 62737898 62777946 + B4galnt3 protein_coding processed_transcript MGP_C3HHeJ_T0000200.1 MGP_C3HHeJ_G0000152.1 mouse_genomes_project 6 117199512 117199978 - MGP_C3HHeJ_P0000200 Igkv14-130 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000201.1 MGP_C3HHeJ_G0000152.1 mouse_genomes_project 6 117199512 117199978 - MGP_C3HHeJ_P0000201 Igkv14-130 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002138.1 MGP_C3HHeJ_G0002059.1 mouse_genomes_project 6 148509474 148512742 - TEC TEC MGP_C3HHeJ_T0000205.1 MGP_C3HHeJ_G0000156.1 mouse_genomes_project 6 117464242 117464962 - MGP_C3HHeJ_P0000205 IG_V_gene IG_V_gene MGP_C3HHeJ_T0078620.1 MGP_C3HHeJ_G0030734.1 mouse_genomes_project 6 96294405 96296102 - MGP_C3HHeJ_P0078620 Gp9 protein_coding protein_coding MGP_C3HHeJ_T0079397.1 MGP_C3HHeJ_G0030893.1 mouse_genomes_project 6 118445993 118513846 + MGP_C3HHeJ_P0079397 protein_coding protein_coding MGP_C3HHeJ_T0077704.1 MGP_C3HHeJ_G0030560.1 mouse_genomes_project 6 66639129 66640059 - MGP_C3HHeJ_P0077704 Olfr211 protein_coding protein_coding MGP_C3HHeJ_T0077705.1 MGP_C3HHeJ_G0030560.1 mouse_genomes_project 6 66639129 66644235 - MGP_C3HHeJ_P0077705 Olfr211 protein_coding protein_coding MGP_C3HHeJ_T0077980.1 MGP_C3HHeJ_G0030608.1 mouse_genomes_project 6 69836773 69849348 - MGP_C3HHeJ_P0077980 Arpc4 protein_coding protein_coding MGP_C3HHeJ_T0077981.1 MGP_C3HHeJ_G0030608.1 mouse_genomes_project 6 69838444 69849255 - MGP_C3HHeJ_P0077981 Arpc4 protein_coding protein_coding MGP_C3HHeJ_T0100742.1 MGP_C3HHeJ_G0038936.1 mouse_genomes_project 6 22226178 22226309 - Gm22267 snoRNA snoRNA MGP_C3HHeJ_T0000303.1 MGP_C3HHeJ_G0000253.1 mouse_genomes_project 6 117280117 117280614 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0076156.1 MGP_C3HHeJ_G0030193.1 mouse_genomes_project 6 21933388 21986931 - MGP_C3HHeJ_P0076156 Wasl protein_coding protein_coding MGP_C3HHeJ_T0076157.1 MGP_C3HHeJ_G0030193.1 mouse_genomes_project 6 21946212 21947623 - Wasl protein_coding retained_intron MGP_C3HHeJ_T0076158.1 MGP_C3HHeJ_G0030193.1 mouse_genomes_project 6 21952234 21986910 - MGP_C3HHeJ_P0076158 Wasl protein_coding protein_coding MGP_C3HHeJ_T0076159.1 MGP_C3HHeJ_G0030193.1 mouse_genomes_project 6 21959349 21986860 - Wasl protein_coding processed_transcript MGP_C3HHeJ_T0075940.1 MGP_C3HHeJ_G0030152.1 mouse_genomes_project 6 9211557 9666225 - MGP_C3HHeJ_P0075940 Thsd7a protein_coding protein_coding MGP_C3HHeJ_T0075941.1 MGP_C3HHeJ_G0030152.1 mouse_genomes_project 6 9217034 9666382 - MGP_C3HHeJ_P0075941 Thsd7a protein_coding protein_coding MGP_C3HHeJ_T0075942.1 MGP_C3HHeJ_G0030152.1 mouse_genomes_project 6 9217074 9218277 - Thsd7a protein_coding retained_intron MGP_C3HHeJ_T0075943.1 MGP_C3HHeJ_G0030152.1 mouse_genomes_project 6 9217296 9321950 - Thsd7a protein_coding processed_transcript MGP_C3HHeJ_T0075944.1 MGP_C3HHeJ_G0030152.1 mouse_genomes_project 6 9220696 9224588 - Thsd7a protein_coding retained_intron MGP_C3HHeJ_T0075945.1 MGP_C3HHeJ_G0030152.1 mouse_genomes_project 6 9368744 9463813 - Thsd7a protein_coding processed_transcript MGP_C3HHeJ_T0102121.1 MGP_C3HHeJ_G0040085.1 mouse_genomes_project 6 131267547 131268387 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008498.1 MGP_C3HHeJ_G0006864.1 mouse_genomes_project 6 46922589 46923491 - 1700026J14Rik lincRNA lincRNA MGP_C3HHeJ_T0015310.1 MGP_C3HHeJ_G0013414.1 mouse_genomes_project 6 108072206 108072720 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076440.1 MGP_C3HHeJ_G0030243.1 mouse_genomes_project 6 28569295 28572350 - MGP_C3HHeJ_P0076440 Klf14 protein_coding protein_coding MGP_C3HHeJ_T0004848.1 MGP_C3HHeJ_G0004156.1 mouse_genomes_project 6 28252225 28260548 + Gm13782 antisense antisense MGP_C3HHeJ_T0015102.1 MGP_C3HHeJ_G0013206.1 mouse_genomes_project 6 22381477 22382273 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008700.1 MGP_C3HHeJ_G0007019.1 mouse_genomes_project 6 151135913 151139033 - lincRNA lincRNA MGP_C3HHeJ_T0102112.1 MGP_C3HHeJ_G0040077.1 mouse_genomes_project 6 125137979 125138736 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100783.1 MGP_C3HHeJ_G0038977.1 mouse_genomes_project 6 112626258 112626395 + Gm22486 snoRNA snoRNA MGP_C3HHeJ_T0001897.1 MGP_C3HHeJ_G0001819.1 mouse_genomes_project 6 21979398 21982291 - TEC TEC MGP_C3HHeJ_T0077687.1 MGP_C3HHeJ_G0030553.1 mouse_genomes_project 6 66382951 66405044 + MGP_C3HHeJ_P0077687 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077688.1 MGP_C3HHeJ_G0030553.1 mouse_genomes_project 6 66383103 66405267 + MGP_C3HHeJ_P0077688 protein_coding unknown_likely_coding MGP_C3HHeJ_T0079845.1 MGP_C3HHeJ_G0030991.1 mouse_genomes_project 6 127125730 127127492 + Mrpl51 protein_coding processed_transcript MGP_C3HHeJ_T0079846.1 MGP_C3HHeJ_G0030991.1 mouse_genomes_project 6 127126094 127130201 + MGP_C3HHeJ_P0079846 Mrpl51 protein_coding protein_coding MGP_C3HHeJ_T0079847.1 MGP_C3HHeJ_G0030991.1 mouse_genomes_project 6 127126146 127126808 + Mrpl51 protein_coding retained_intron MGP_C3HHeJ_T0076441.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29028912 29148883 + MGP_C3HHeJ_P0076441 Mkln1 protein_coding protein_coding MGP_C3HHeJ_T0076442.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29029005 29102558 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076443.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29029006 29067940 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076444.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29029013 29049645 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076445.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29029022 29061076 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076446.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29029022 29034681 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076447.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29029036 29065054 + Mkln1 protein_coding processed_transcript MGP_C3HHeJ_T0076448.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29060890 29121077 + Mkln1 protein_coding processed_transcript MGP_C3HHeJ_T0076449.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29060924 29106043 + Mkln1 protein_coding processed_transcript MGP_C3HHeJ_T0076450.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29099788 29124359 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076451.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29108530 29112142 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0076452.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29121059 29140043 + MGP_C3HHeJ_P0076452 Mkln1 protein_coding protein_coding MGP_C3HHeJ_T0076453.1 MGP_C3HHeJ_G0030244.1 mouse_genomes_project 6 29124286 29139922 + Mkln1 protein_coding retained_intron MGP_C3HHeJ_T0002117.1 MGP_C3HHeJ_G0002038.1 mouse_genomes_project 6 135896984 135898808 + TEC TEC MGP_C3HHeJ_T0001878.1 MGP_C3HHeJ_G0001800.1 mouse_genomes_project 6 1725153 1725473 + TEC TEC MGP_C3HHeJ_T0099557.1 MGP_C3HHeJ_G0037751.1 mouse_genomes_project 6 152547227 152547331 - Gm23462 snRNA snRNA MGP_C3HHeJ_T0077929.1 MGP_C3HHeJ_G0030599.1 mouse_genomes_project 6 69692509 69709284 + MGP_C3HHeJ_P0077929 Emc3 protein_coding protein_coding MGP_C3HHeJ_T0077930.1 MGP_C3HHeJ_G0030599.1 mouse_genomes_project 6 69692543 69693755 + Emc3 protein_coding retained_intron MGP_C3HHeJ_T0077931.1 MGP_C3HHeJ_G0030599.1 mouse_genomes_project 6 69703248 69704366 + Emc3 protein_coding retained_intron MGP_C3HHeJ_T0102140.1 MGP_C3HHeJ_G0040104.1 mouse_genomes_project 6 136130938 136133021 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015448.1 MGP_C3HHeJ_G0013552.1 mouse_genomes_project 6 137767557 137767966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0078305.1 MGP_C3HHeJ_G0030671.1 mouse_genomes_project 6 91652038 91685423 + MGP_C3HHeJ_P0078305 Rbsn protein_coding protein_coding MGP_C3HHeJ_T0078306.1 MGP_C3HHeJ_G0030671.1 mouse_genomes_project 6 91652114 91665103 + MGP_C3HHeJ_P0078306 Rbsn protein_coding protein_coding MGP_C3HHeJ_T0078307.1 MGP_C3HHeJ_G0030671.1 mouse_genomes_project 6 91652394 91660710 + MGP_C3HHeJ_P0078307 Rbsn protein_coding protein_coding MGP_C3HHeJ_T0078308.1 MGP_C3HHeJ_G0030671.1 mouse_genomes_project 6 91670627 91681752 + Rbsn protein_coding processed_transcript MGP_C3HHeJ_T0078309.1 MGP_C3HHeJ_G0030671.1 mouse_genomes_project 6 91672530 91682294 + MGP_C3HHeJ_P0078309 Rbsn protein_coding protein_coding MGP_C3HHeJ_T0078310.1 MGP_C3HHeJ_G0030671.1 mouse_genomes_project 6 91678006 91681389 + Rbsn protein_coding retained_intron MGP_C3HHeJ_T0080088.1 MGP_C3HHeJ_G0031053.1 mouse_genomes_project 6 131802519 131811407 + MGP_C3HHeJ_P0080088 Gabarapl1 protein_coding protein_coding MGP_C3HHeJ_T0077514.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62608977 62650790 + MGP_C3HHeJ_P0077514 Ccdc77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077515.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62608995 62625507 + MGP_C3HHeJ_P0077515 Ccdc77 protein_coding protein_coding MGP_C3HHeJ_T0077516.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617846 62650078 + MGP_C3HHeJ_P0077516 Ccdc77 protein_coding protein_coding MGP_C3HHeJ_T0077517.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617889 62650790 + MGP_C3HHeJ_P0077517 Ccdc77 protein_coding protein_coding MGP_C3HHeJ_T0077518.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617908 62643726 + MGP_C3HHeJ_P0077518 Ccdc77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077519.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617941 62637767 + Ccdc77 protein_coding retained_intron MGP_C3HHeJ_T0077520.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617951 62621585 + Ccdc77 protein_coding retained_intron MGP_C3HHeJ_T0077521.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617951 62640759 + MGP_C3HHeJ_P0077521 Ccdc77 protein_coding protein_coding MGP_C3HHeJ_T0077522.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62617978 62640726 + MGP_C3HHeJ_P0077522 Ccdc77 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077523.1 MGP_C3HHeJ_G0030527.1 mouse_genomes_project 6 62625324 62630238 + Ccdc77 protein_coding retained_intron MGP_C3HHeJ_T0004869.1 MGP_C3HHeJ_G0004174.1 mouse_genomes_project 6 38914034 38914332 + Gm29588 antisense antisense MGP_C3HHeJ_T0079875.1 MGP_C3HHeJ_G0030999.1 mouse_genomes_project 6 127302341 127321497 - MGP_C3HHeJ_P0079875 Plekhg6 protein_coding protein_coding MGP_C3HHeJ_T0001939.1 MGP_C3HHeJ_G0001861.1 mouse_genomes_project 6 44313433 44315975 + TEC TEC MGP_C3HHeJ_T0079079.1 MGP_C3HHeJ_G0030822.1 mouse_genomes_project 6 101230214 101232752 + MGP_C3HHeJ_P0079079 Dok1 protein_coding protein_coding MGP_C3HHeJ_T0079080.1 MGP_C3HHeJ_G0030822.1 mouse_genomes_project 6 101230217 101232746 + MGP_C3HHeJ_P0079080 Dok1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079081.1 MGP_C3HHeJ_G0030822.1 mouse_genomes_project 6 101231124 101231835 + MGP_C3HHeJ_P0079081 Dok1 protein_coding protein_coding MGP_C3HHeJ_T0015117.1 MGP_C3HHeJ_G0013221.1 mouse_genomes_project 6 35340667 35341214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008635.1 MGP_C3HHeJ_G0006973.1 mouse_genomes_project 6 117464254 117493468 - lincRNA lincRNA MGP_C3HHeJ_T0000197.1 MGP_C3HHeJ_G0000150.1 mouse_genomes_project 6 117065166 117065637 - MGP_C3HHeJ_P0000197 Igkv14-126 IG_V_gene IG_V_gene MGP_C3HHeJ_T0002089.1 MGP_C3HHeJ_G0002010.1 mouse_genomes_project 6 112720857 112723646 - TEC TEC MGP_C3HHeJ_T0098587.1 MGP_C3HHeJ_G0036782.1 mouse_genomes_project 6 92370228 92380906 - Gm45216 sense_overlapping sense_overlapping MGP_C3HHeJ_T0078922.1 MGP_C3HHeJ_G0030793.1 mouse_genomes_project 6 100483252 100499113 - MGP_C3HHeJ_P0078922 Atp6v1b1 protein_coding protein_coding MGP_C3HHeJ_T0078923.1 MGP_C3HHeJ_G0030793.1 mouse_genomes_project 6 100483875 100484969 - Atp6v1b1 protein_coding retained_intron MGP_C3HHeJ_T0078924.1 MGP_C3HHeJ_G0030793.1 mouse_genomes_project 6 100487336 100499009 - MGP_C3HHeJ_P0078924 Atp6v1b1 protein_coding protein_coding MGP_C3HHeJ_T0078925.1 MGP_C3HHeJ_G0030793.1 mouse_genomes_project 6 100488229 100490263 - Atp6v1b1 protein_coding retained_intron MGP_C3HHeJ_T0078926.1 MGP_C3HHeJ_G0030793.1 mouse_genomes_project 6 100490790 100499039 - MGP_C3HHeJ_P0078926 Atp6v1b1 protein_coding protein_coding MGP_C3HHeJ_T0078927.1 MGP_C3HHeJ_G0030793.1 mouse_genomes_project 6 100491318 100499054 - Atp6v1b1 protein_coding processed_transcript MGP_C3HHeJ_T0015339.1 MGP_C3HHeJ_G0013443.1 mouse_genomes_project 6 116800762 116801053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015165.1 MGP_C3HHeJ_G0013269.1 mouse_genomes_project 6 49112578 49114568 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076817.1 MGP_C3HHeJ_G0030336.1 mouse_genomes_project 6 40070106 40079114 + MGP_C3HHeJ_P0076817 Sva protein_coding protein_coding MGP_C3HHeJ_T0076818.1 MGP_C3HHeJ_G0030336.1 mouse_genomes_project 6 40070106 40079120 + MGP_C3HHeJ_P0076818 Sva protein_coding protein_coding MGP_C3HHeJ_T0015394.1 MGP_C3HHeJ_G0013498.1 mouse_genomes_project 6 124365886 124366131 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0077683.1 MGP_C3HHeJ_G0030552.1 mouse_genomes_project 6 65922610 65935395 - MGP_C3HHeJ_P0077683 Cxcl12 protein_coding protein_coding MGP_C3HHeJ_T0077684.1 MGP_C3HHeJ_G0030552.1 mouse_genomes_project 6 65922611 65935398 - MGP_C3HHeJ_P0077684 Cxcl12 protein_coding protein_coding MGP_C3HHeJ_T0077685.1 MGP_C3HHeJ_G0030552.1 mouse_genomes_project 6 65927850 65935395 - Cxcl12 protein_coding retained_intron MGP_C3HHeJ_T0077686.1 MGP_C3HHeJ_G0030552.1 mouse_genomes_project 6 65928908 65935437 - MGP_C3HHeJ_P0077686 Cxcl12 protein_coding protein_coding MGP_C3HHeJ_T0079608.1 MGP_C3HHeJ_G0030951.1 mouse_genomes_project 6 126035952 126071805 - MGP_C3HHeJ_P0079608 Vmn2r27 protein_coding protein_coding MGP_C3HHeJ_T0080216.1 MGP_C3HHeJ_G0031112.1 mouse_genomes_project 6 137761868 137792012 + MGP_C3HHeJ_P0080216 Crebl2 protein_coding protein_coding MGP_C3HHeJ_T0080217.1 MGP_C3HHeJ_G0031112.1 mouse_genomes_project 6 137761942 137782672 + Crebl2 protein_coding retained_intron MGP_C3HHeJ_T0080218.1 MGP_C3HHeJ_G0031112.1 mouse_genomes_project 6 137761969 137789247 + MGP_C3HHeJ_P0080218 Crebl2 protein_coding protein_coding MGP_C3HHeJ_T0080219.1 MGP_C3HHeJ_G0031112.1 mouse_genomes_project 6 137784254 137787676 + Crebl2 protein_coding retained_intron MGP_C3HHeJ_T0011558.1 MGP_C3HHeJ_G0009691.1 mouse_genomes_project 6 50820151 50820322 + Gm27866 misc_RNA misc_RNA MGP_C3HHeJ_T0008570.1 MGP_C3HHeJ_G0006923.1 mouse_genomes_project 6 83680430 83704792 + Gm44442 lincRNA lincRNA MGP_C3HHeJ_T0008571.1 MGP_C3HHeJ_G0006923.1 mouse_genomes_project 6 83700459 83704791 + Gm44442 lincRNA lincRNA MGP_C3HHeJ_T0076894.1 MGP_C3HHeJ_G0030363.1 mouse_genomes_project 6 40977075 40978002 + MGP_C3HHeJ_P0076894 Olfr446 protein_coding protein_coding MGP_C3HHeJ_T0079659.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126619072 126631604 - MGP_C3HHeJ_P0079659 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079660.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126619072 126639343 - MGP_C3HHeJ_P0079660 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079661.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126619072 126639254 - MGP_C3HHeJ_P0079661 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079662.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126619085 126620208 - MGP_C3HHeJ_P0079662 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079663.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126619473 126639213 - MGP_C3HHeJ_P0079663 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079664.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126623772 126625911 - MGP_C3HHeJ_P0079664 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079665.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126623820 126625861 - MGP_C3HHeJ_P0079665 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079666.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126626196 126627158 - Ptpn6 protein_coding retained_intron MGP_C3HHeJ_T0079667.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126627350 126631221 - Ptpn6 protein_coding processed_transcript MGP_C3HHeJ_T0079668.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126630811 126631532 - MGP_C3HHeJ_P0079668 Ptpn6 protein_coding protein_coding MGP_C3HHeJ_T0079669.1 MGP_C3HHeJ_G0030963.1 mouse_genomes_project 6 126631104 126631560 - Ptpn6 protein_coding retained_intron MGP_C3HHeJ_T0079349.1 MGP_C3HHeJ_G0030881.1 mouse_genomes_project 6 113658181 113664022 + MGP_C3HHeJ_P0079349 Tex37 protein_coding protein_coding MGP_C3HHeJ_T0080197.1 MGP_C3HHeJ_G0031108.1 mouse_genomes_project 6 137363404 137489397 - MGP_C3HHeJ_P0080197 Lrp6 protein_coding protein_coding MGP_C3HHeJ_T0080198.1 MGP_C3HHeJ_G0031108.1 mouse_genomes_project 6 137367629 137388673 - Lrp6 protein_coding retained_intron MGP_C3HHeJ_T0080199.1 MGP_C3HHeJ_G0031108.1 mouse_genomes_project 6 137379097 137382370 - Lrp6 protein_coding retained_intron MGP_C3HHeJ_T0080200.1 MGP_C3HHeJ_G0031108.1 mouse_genomes_project 6 137379961 137385136 - Lrp6 protein_coding retained_intron MGP_C3HHeJ_T0080201.1 MGP_C3HHeJ_G0031108.1 mouse_genomes_project 6 137431596 137489449 - MGP_C3HHeJ_P0080201 Lrp6 protein_coding protein_coding MGP_C3HHeJ_T0080202.1 MGP_C3HHeJ_G0031108.1 mouse_genomes_project 6 137462586 137463534 - Lrp6 protein_coding retained_intron MGP_C3HHeJ_T0079992.1 MGP_C3HHeJ_G0031025.1 mouse_genomes_project 6 130474374 130484016 + MGP_C3HHeJ_P0079992 4933413G19Rik protein_coding protein_coding MGP_C3HHeJ_T0079993.1 MGP_C3HHeJ_G0031025.1 mouse_genomes_project 6 130474374 130484679 + MGP_C3HHeJ_P0079993 4933413G19Rik protein_coding protein_coding MGP_C3HHeJ_T0008517.1 MGP_C3HHeJ_G0006879.1 mouse_genomes_project 6 50651289 50660779 + Halr1 lincRNA lincRNA MGP_C3HHeJ_T0008518.1 MGP_C3HHeJ_G0006879.1 mouse_genomes_project 6 50651334 50661945 + Halr1 lincRNA lincRNA MGP_C3HHeJ_T0008519.1 MGP_C3HHeJ_G0006879.1 mouse_genomes_project 6 50651343 50660440 + Halr1 lincRNA lincRNA MGP_C3HHeJ_T0080699.1 MGP_C3HHeJ_G0031203.1 mouse_genomes_project 6 150665313 150677713 - MGP_C3HHeJ_P0080699 Pthlh protein_coding protein_coding MGP_C3HHeJ_T0080700.1 MGP_C3HHeJ_G0031203.1 mouse_genomes_project 6 150665321 150677729 - MGP_C3HHeJ_P0080700 Pthlh protein_coding protein_coding MGP_C3HHeJ_T0004894.1 MGP_C3HHeJ_G0004191.1 mouse_genomes_project 6 53956313 53967907 - Gm44073 antisense antisense MGP_C3HHeJ_T0077199.1 MGP_C3HHeJ_G0030440.1 mouse_genomes_project 6 50765810 50771713 - MGP_C3HHeJ_P0077199 Hoxa7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077200.1 MGP_C3HHeJ_G0030440.1 mouse_genomes_project 6 50765817 50768825 - MGP_C3HHeJ_P0077200 Hoxa7 protein_coding protein_coding MGP_C3HHeJ_T0077201.1 MGP_C3HHeJ_G0030440.1 mouse_genomes_project 6 50767072 50770031 - MGP_C3HHeJ_P0077201 Hoxa7 protein_coding protein_coding MGP_C3HHeJ_T0077202.1 MGP_C3HHeJ_G0030440.1 mouse_genomes_project 6 50767328 50773168 - MGP_C3HHeJ_P0077202 Hoxa7 protein_coding protein_coding MGP_C3HHeJ_T0077203.1 MGP_C3HHeJ_G0030440.1 mouse_genomes_project 6 50767759 50768772 - MGP_C3HHeJ_P0077203 Hoxa7 protein_coding protein_coding MGP_C3HHeJ_T0100781.1 MGP_C3HHeJ_G0038975.1 mouse_genomes_project 6 110085819 110085951 - Gm26179 snoRNA snoRNA MGP_C3HHeJ_T0100796.1 MGP_C3HHeJ_G0038990.1 mouse_genomes_project 6 125872976 125873052 - Gm24843 snoRNA snoRNA MGP_C3HHeJ_T0079226.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112089640 112096331 + MGP_C3HHeJ_P0079226 Rnf181 protein_coding protein_coding MGP_C3HHeJ_T0079227.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094148 112096862 + MGP_C3HHeJ_P0079227 Rnf181 protein_coding protein_coding MGP_C3HHeJ_T0079228.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094152 112095963 + Rnf181 protein_coding retained_intron MGP_C3HHeJ_T0079229.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094187 112096862 + MGP_C3HHeJ_P0079229 Rnf181 protein_coding protein_coding MGP_C3HHeJ_T0079230.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094190 112096299 + MGP_C3HHeJ_P0079230 Rnf181 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079231.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094198 112096288 + MGP_C3HHeJ_P0079231 Rnf181 protein_coding protein_coding MGP_C3HHeJ_T0079232.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094215 112096240 + MGP_C3HHeJ_P0079232 Rnf181 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079233.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094217 112096298 + MGP_C3HHeJ_P0079233 Rnf181 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079234.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094220 112096704 + MGP_C3HHeJ_P0079234 Rnf181 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079235.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094236 112096325 + MGP_C3HHeJ_P0079235 Rnf181 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079236.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094457 112096862 + Rnf181 protein_coding retained_intron MGP_C3HHeJ_T0079237.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112094585 112095563 + Rnf181 protein_coding retained_intron MGP_C3HHeJ_T0079238.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112095184 112096492 + MGP_C3HHeJ_P0079238 Rnf181 protein_coding protein_coding MGP_C3HHeJ_T0079239.1 MGP_C3HHeJ_G0030858.1 mouse_genomes_project 6 112095514 112096158 + Rnf181 protein_coding retained_intron MGP_C3HHeJ_T0008480.1 MGP_C3HHeJ_G0006855.1 mouse_genomes_project 6 33336277 33338665 - lincRNA lincRNA MGP_C3HHeJ_T0075870.1 MGP_C3HHeJ_G0030136.1 mouse_genomes_project 6 3674848 3678844 + MGP_C3HHeJ_P0075870 Dlx6 protein_coding protein_coding MGP_C3HHeJ_T0075871.1 MGP_C3HHeJ_G0030136.1 mouse_genomes_project 6 3674848 3683369 + MGP_C3HHeJ_P0075871 Dlx6 protein_coding protein_coding MGP_C3HHeJ_T0075872.1 MGP_C3HHeJ_G0030136.1 mouse_genomes_project 6 3675236 3678844 + MGP_C3HHeJ_P0075872 Dlx6 protein_coding protein_coding MGP_C3HHeJ_T0075873.1 MGP_C3HHeJ_G0030136.1 mouse_genomes_project 6 3675312 3676945 + Dlx6 protein_coding retained_intron MGP_C3HHeJ_T0011561.1 MGP_C3HHeJ_G0009694.1 mouse_genomes_project 6 71282728 71283043 - Gm25454 misc_RNA misc_RNA MGP_C3HHeJ_T0077221.1 MGP_C3HHeJ_G0030445.1 mouse_genomes_project 6 50872964 50877845 + MGP_C3HHeJ_P0077221 Evx1 protein_coding protein_coding MGP_C3HHeJ_T0077222.1 MGP_C3HHeJ_G0030445.1 mouse_genomes_project 6 50873018 50876111 + MGP_C3HHeJ_P0077222 Evx1 protein_coding protein_coding MGP_C3HHeJ_T0015385.1 MGP_C3HHeJ_G0013489.1 mouse_genomes_project 6 122975214 122975602 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015301.1 MGP_C3HHeJ_G0013405.1 mouse_genomes_project 6 102073844 102074516 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075897.1 MGP_C3HHeJ_G0030144.1 mouse_genomes_project 6 5085423 5088619 - MGP_C3HHeJ_P0075897 Rpa3 protein_coding protein_coding MGP_C3HHeJ_T0015109.1 MGP_C3HHeJ_G0013213.1 mouse_genomes_project 6 28300524 28300755 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000273.1 MGP_C3HHeJ_G0000223.1 mouse_genomes_project 6 115255654 115256181 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0015296.1 MGP_C3HHeJ_G0013400.1 mouse_genomes_project 6 100399042 100399589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0076961.1 MGP_C3HHeJ_G0030382.1 mouse_genomes_project 6 46244545 46256636 + MGP_C3HHeJ_P0076961 Zfp212 protein_coding protein_coding MGP_C3HHeJ_T0076962.1 MGP_C3HHeJ_G0030382.1 mouse_genomes_project 6 46250365 46251206 + Zfp212 protein_coding retained_intron MGP_C3HHeJ_T0080146.1 MGP_C3HHeJ_G0031075.1 mouse_genomes_project 6 133919755 133943401 - MGP_C3HHeJ_P0080146 Ybx3 protein_coding protein_coding MGP_C3HHeJ_T0080147.1 MGP_C3HHeJ_G0031075.1 mouse_genomes_project 6 133919755 133943363 - MGP_C3HHeJ_P0080147 Ybx3 protein_coding protein_coding MGP_C3HHeJ_T0080148.1 MGP_C3HHeJ_G0031075.1 mouse_genomes_project 6 133919990 133933189 - Ybx3 protein_coding processed_transcript MGP_C3HHeJ_T0080149.1 MGP_C3HHeJ_G0031075.1 mouse_genomes_project 6 133920000 133923919 - Ybx3 protein_coding retained_intron MGP_C3HHeJ_T0080150.1 MGP_C3HHeJ_G0031075.1 mouse_genomes_project 6 133931102 133933450 - Ybx3 protein_coding processed_transcript MGP_C3HHeJ_T0101459.1 MGP_C3HHeJ_G0039468.1 mouse_genomes_project 6 132947197 132973725 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0015393.1 MGP_C3HHeJ_G0013497.1 mouse_genomes_project 6 124197841 124198601 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0075883.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4482340 4500344 - MGP_C3HHeJ_P0075883 Asns protein_coding protein_coding MGP_C3HHeJ_T0075884.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4482340 4499961 - MGP_C3HHeJ_P0075884 Asns protein_coding protein_coding MGP_C3HHeJ_T0075885.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4482641 4484567 - Asns protein_coding processed_transcript MGP_C3HHeJ_T0075886.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4488459 4489451 - Asns protein_coding retained_intron MGP_C3HHeJ_T0075887.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4489365 4500200 - MGP_C3HHeJ_P0075887 Asns protein_coding protein_coding MGP_C3HHeJ_T0075888.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4492274 4499311 - MGP_C3HHeJ_P0075888 Asns protein_coding protein_coding MGP_C3HHeJ_T0075889.1 MGP_C3HHeJ_G0030140.1 mouse_genomes_project 6 4492366 4499962 - MGP_C3HHeJ_P0075889 Asns protein_coding protein_coding MGP_C3HHeJ_T0000043.1 MGP_C3HHeJ_G0000035.1 mouse_genomes_project 6 113867393 113867431 - MGP_C3HHeJ_P0000043 Igkj4 IG_J_gene IG_J_gene MGP_C3HHeJ_T0079488.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122752422 122774668 + MGP_C3HHeJ_P0079488 Slc6a12 protein_coding protein_coding MGP_C3HHeJ_T0079489.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122752742 122756951 + MGP_C3HHeJ_P0079489 Slc6a12 protein_coding protein_coding MGP_C3HHeJ_T0079490.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122755961 122775071 + MGP_C3HHeJ_P0079490 Slc6a12 protein_coding protein_coding MGP_C3HHeJ_T0079491.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122756762 122764666 + MGP_C3HHeJ_P0079491 Slc6a12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079492.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122756762 122774668 + MGP_C3HHeJ_P0079492 Slc6a12 protein_coding protein_coding MGP_C3HHeJ_T0079493.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122766159 122771244 + Slc6a12 protein_coding retained_intron MGP_C3HHeJ_T0079494.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122766172 122772660 + Slc6a12 protein_coding retained_intron MGP_C3HHeJ_T0079495.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122766257 122774668 + MGP_C3HHeJ_P0079495 Slc6a12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079496.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122766257 122774668 + MGP_C3HHeJ_P0079496 Slc6a12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0079497.1 MGP_C3HHeJ_G0030915.1 mouse_genomes_project 6 122768304 122773190 + Slc6a12 protein_coding retained_intron MGP_C3HHeJ_T0010728.1 MGP_C3HHeJ_G0008861.1 mouse_genomes_project 6 131166244 131166300 - Gm27336 miRNA miRNA MGP_C3HHeJ_T0011527.1 MGP_C3HHeJ_G0009660.1 mouse_genomes_project 6 7755999 7756091 + Gm27894 misc_RNA misc_RNA MGP_C3HHeJ_T0080165.1 MGP_C3HHeJ_G0031088.1 mouse_genomes_project 6 135478518 135479552 - MGP_C3HHeJ_P0080165 Tas2r115 protein_coding protein_coding MGP_C3HHeJ_T0000266.1 MGP_C3HHeJ_G0000216.1 mouse_genomes_project 6 114776367 114776649 + IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000155.1 MGP_C3HHeJ_G0000118.1 mouse_genomes_project 6 114889265 114889815 + MGP_C3HHeJ_P0000155 IG_V_gene IG_V_gene MGP_C3HHeJ_T0076139.1 MGP_C3HHeJ_G0030185.1 mouse_genomes_project 6 20957452 20958889 - MGP_C3HHeJ_P0076139 Rnf133 protein_coding protein_coding MGP_C3HHeJ_T0076140.1 MGP_C3HHeJ_G0030185.1 mouse_genomes_project 6 20957457 20958790 - MGP_C3HHeJ_P0076140 Rnf133 protein_coding protein_coding MGP_C3HHeJ_T0015217.1 MGP_C3HHeJ_G0013321.1 mouse_genomes_project 6 69658095 69658320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011567.1 MGP_C3HHeJ_G0009700.1 mouse_genomes_project 6 95622345 95622670 - Gm25178 misc_RNA misc_RNA MGP_C3HHeJ_T0099516.1 MGP_C3HHeJ_G0037710.1 mouse_genomes_project 6 40874224 40874330 + Gm23982 snRNA snRNA MGP_C3HHeJ_T0015398.1 MGP_C3HHeJ_G0013502.1 mouse_genomes_project 6 124882126 124882621 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001920.1 MGP_C3HHeJ_G0001842.1 mouse_genomes_project 6 38856552 38857895 - TEC TEC MGP_C3HHeJ_T0080026.1 MGP_C3HHeJ_G0031034.1 mouse_genomes_project 6 130757981 131046131 - MGP_C3HHeJ_P0080026 protein_coding protein_coding MGP_C3HHeJ_T0080034.1 MGP_C3HHeJ_G0031034.1 mouse_genomes_project 6 130967263 131046068 - MGP_C3HHeJ_P0080034 protein_coding protein_coding MGP_C3HHeJ_T0079588.1 MGP_C3HHeJ_G0030939.1 mouse_genomes_project 6 124818212 124861325 + MGP_C3HHeJ_P0079588 Clec4b2 protein_coding protein_coding MGP_C3HHeJ_T0080166.1 MGP_C3HHeJ_G0031089.1 mouse_genomes_project 6 135498109 135499039 + MGP_C3HHeJ_P0080166 Tas2r124 protein_coding protein_coding MGP_C3HHeJ_T0015377.1 MGP_C3HHeJ_G0013481.1 mouse_genomes_project 6 120181066 120181628 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0001996.1 MGP_C3HHeJ_G0001917.1 mouse_genomes_project 6 82938592 82940117 + TEC TEC MGP_C3HHeJ_T0077051.1 MGP_C3HHeJ_G0030402.1 mouse_genomes_project 6 47115894 47153887 + MGP_C3HHeJ_P0077051 Gm28053 protein_coding protein_coding MGP_C3HHeJ_T0077053.1 MGP_C3HHeJ_G0030402.1 mouse_genomes_project 6 47115941 47127073 + Gm28053 protein_coding retained_intron MGP_C3HHeJ_T0077056.1 MGP_C3HHeJ_G0030402.1 mouse_genomes_project 6 47138690 47153931 + MGP_C3HHeJ_P0077056 Gm28053 protein_coding protein_coding MGP_C3HHeJ_T0004828.1 MGP_C3HHeJ_G0004143.1 mouse_genomes_project 6 3630521 3673107 - Dlx6os1 antisense antisense MGP_C3HHeJ_T0004829.1 MGP_C3HHeJ_G0004143.1 mouse_genomes_project 6 3630875 3686399 - Dlx6os1 antisense antisense MGP_C3HHeJ_T0080332.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140355425 140491247 + Ptpro protein_coding retained_intron MGP_C3HHeJ_T0080333.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140355440 140576918 + MGP_C3HHeJ_P0080333 Ptpro protein_coding protein_coding MGP_C3HHeJ_T0080334.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140355571 140576918 + MGP_C3HHeJ_P0080334 Ptpro protein_coding protein_coding MGP_C3HHeJ_T0080335.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140524973 140576924 + MGP_C3HHeJ_P0080335 Ptpro protein_coding protein_coding MGP_C3HHeJ_T0080336.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140524989 140576924 + MGP_C3HHeJ_P0080336 Ptpro protein_coding protein_coding MGP_C3HHeJ_T0080337.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140525011 140528848 + Ptpro protein_coding retained_intron MGP_C3HHeJ_T0080338.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140566561 140575995 + Ptpro protein_coding processed_transcript MGP_C3HHeJ_T0080339.1 MGP_C3HHeJ_G0031139.1 mouse_genomes_project 6 140567700 140576313 + Ptpro protein_coding processed_transcript MGP_C3HHeJ_T0004993.1 MGP_C3HHeJ_G0004253.1 mouse_genomes_project 6 112346684 112349669 + 4933431G14Rik antisense antisense MGP_C3HHeJ_T0004994.1 MGP_C3HHeJ_G0004253.1 mouse_genomes_project 6 112346941 112349669 + 4933431G14Rik antisense antisense MGP_C3HHeJ_T0077971.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69812603 69834738 - MGP_C3HHeJ_P0077971 Ttll3 protein_coding protein_coding MGP_C3HHeJ_T0077972.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69812607 69834036 - MGP_C3HHeJ_P0077972 Ttll3 protein_coding protein_coding MGP_C3HHeJ_T0077973.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69812622 69834699 - MGP_C3HHeJ_P0077973 Ttll3 protein_coding protein_coding MGP_C3HHeJ_T0077974.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69812629 69829448 - Ttll3 protein_coding retained_intron MGP_C3HHeJ_T0077975.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69812633 69814361 - Ttll3 protein_coding processed_transcript MGP_C3HHeJ_T0077976.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69817264 69817958 - Ttll3 protein_coding processed_transcript MGP_C3HHeJ_T0077977.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69817264 69834019 - MGP_C3HHeJ_P0077977 Ttll3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0077978.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69827735 69837962 - MGP_C3HHeJ_P0077978 Ttll3 protein_coding protein_coding MGP_C3HHeJ_T0077979.1 MGP_C3HHeJ_G0030607.1 mouse_genomes_project 6 69828335 69836484 - Ttll3 protein_coding processed_transcript MGP_C3HHeJ_T0077131.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48663954 48668579 - Dfna5 protein_coding retained_intron MGP_C3HHeJ_T0077132.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48664431 48743293 - MGP_C3HHeJ_P0077132 Dfna5 protein_coding protein_coding MGP_C3HHeJ_T0077134.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48675996 48743285 - MGP_C3HHeJ_P0077134 Dfna5 protein_coding protein_coding MGP_C3HHeJ_T0077135.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48683910 48745400 - MGP_C3HHeJ_P0077135 Dfna5 protein_coding protein_coding MGP_C3HHeJ_T0077136.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48683912 48743307 - MGP_C3HHeJ_P0077136 Dfna5 protein_coding protein_coding MGP_C3HHeJ_T0077137.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48722636 48743564 - MGP_C3HHeJ_P0077137 Dfna5 protein_coding protein_coding MGP_C3HHeJ_T0077138.1 MGP_C3HHeJ_G0030422.1 mouse_genomes_project 6 48740918 48743513 - Dfna5 protein_coding retained_intron MGP_C3HHeJ_T0079359.1 MGP_C3HHeJ_G0030885.1 mouse_genomes_project 6 117528541 117607014 + MGP_C3HHeJ_P0079359 Il23r protein_coding protein_coding MGP_C3HHeJ_T0000044.1 MGP_C3HHeJ_G0000036.1 mouse_genomes_project 6 113867718 113867756 - MGP_C3HHeJ_P0000044 Igkj3 IG_J_gene IG_J_gene MGP_C3HHeJ_T0000045.1 MGP_C3HHeJ_G0000036.1 mouse_genomes_project 6 113867720 113867756 - Igkj3 IG_J_gene processed_transcript MGP_C3HHeJ_T0079024.1 MGP_C3HHeJ_G0030811.1 mouse_genomes_project 6 101141751 101145154 - MGP_C3HHeJ_P0079024 Mogs protein_coding protein_coding MGP_C3HHeJ_T0079025.1 MGP_C3HHeJ_G0030811.1 mouse_genomes_project 6 101143298 101144134 - Mogs protein_coding retained_intron MGP_C3HHeJ_T0008618.1 MGP_C3HHeJ_G0006956.1 mouse_genomes_project 6 102295225 102296221 + Gm44202 lincRNA lincRNA MGP_C3HHeJ_T0077395.1 MGP_C3HHeJ_G0030492.1 mouse_genomes_project 6 56180061 56181148 - MGP_C3HHeJ_P0077395 Vmn1r18 protein_coding protein_coding MGP_C3HHeJ_T0098165.1 MGP_C3HHeJ_G0036377.1 mouse_genomes_project 6 94737762 94737897 + Gm25961 rRNA rRNA MGP_C3HHeJ_T0011579.1 MGP_C3HHeJ_G0009712.1 mouse_genomes_project 6 145238722 145238971 - Gm23775 misc_RNA misc_RNA MGP_C3HHeJ_T0079395.1 MGP_C3HHeJ_G0030891.1 mouse_genomes_project 6 118278673 118279709 + MGP_C3HHeJ_P0079395 Vmn1r38 protein_coding protein_coding MGP_C3HHeJ_T0077389.1 MGP_C3HHeJ_G0030486.1 mouse_genomes_project 6 55961410 55962345 + MGP_C3HHeJ_P0077389 Vmn1r12 protein_coding protein_coding MGP_C3HHeJ_T0077032.1 MGP_C3HHeJ_G0030397.1 mouse_genomes_project 6 47017218 47024141 + MGP_C3HHeJ_P0077032 AI854703 protein_coding protein_coding MGP_C3HHeJ_T0077033.1 MGP_C3HHeJ_G0030397.1 mouse_genomes_project 6 47017674 47019915 + MGP_C3HHeJ_P0077033 AI854703 protein_coding protein_coding MGP_C3HHeJ_T0077034.1 MGP_C3HHeJ_G0030397.1 mouse_genomes_project 6 47017732 47019915 + MGP_C3HHeJ_P0077034 AI854703 protein_coding protein_coding MGP_C3HHeJ_T0077035.1 MGP_C3HHeJ_G0030397.1 mouse_genomes_project 6 47018386 47024145 + MGP_C3HHeJ_P0077035 AI854703 protein_coding protein_coding MGP_C3HHeJ_T0076482.1 MGP_C3HHeJ_G0030250.1 mouse_genomes_project 6 31716675 31825006 + MGP_C3HHeJ_P0076482 Lrguk protein_coding protein_coding MGP_C3HHeJ_T0076483.1 MGP_C3HHeJ_G0030250.1 mouse_genomes_project 6 31716677 31736509 + MGP_C3HHeJ_P0076483 Lrguk protein_coding protein_coding MGP_C3HHeJ_T0076484.1 MGP_C3HHeJ_G0030250.1 mouse_genomes_project 6 31726535 31736524 + MGP_C3HHeJ_P0076484 Lrguk protein_coding protein_coding MGP_C3HHeJ_T0079412.1 MGP_C3HHeJ_G0030901.1 mouse_genomes_project 6 119455239 119498108 - MGP_C3HHeJ_P0079412 Ndnf protein_coding protein_coding MGP_C3HHeJ_T0079413.1 MGP_C3HHeJ_G0030901.1 mouse_genomes_project 6 119464125 119466136 - Ndnf protein_coding retained_intron MGP_C3HHeJ_T0015416.1 MGP_C3HHeJ_G0013520.1 mouse_genomes_project 6 129837784 129838010 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086729.1 MGP_C3HHeJ_G0032799.1 mouse_genomes_project 7 135617456 135637402 - MGP_C3HHeJ_P0086729 2310057M21Rik protein_coding protein_coding MGP_C3HHeJ_T0085349.1 MGP_C3HHeJ_G0032492.1 mouse_genomes_project 7 110887914 110914904 + MGP_C3HHeJ_P0085349 Olfml1 protein_coding protein_coding MGP_C3HHeJ_T0087391.1 MGP_C3HHeJ_G0032964.1 mouse_genomes_project 7 147683278 147723371 - MGP_C3HHeJ_P0087391 Th protein_coding protein_coding MGP_C3HHeJ_T0087392.1 MGP_C3HHeJ_G0032964.1 mouse_genomes_project 7 147683278 147690531 - MGP_C3HHeJ_P0087392 Th protein_coding protein_coding MGP_C3HHeJ_T0087393.1 MGP_C3HHeJ_G0032964.1 mouse_genomes_project 7 147683492 147690478 - MGP_C3HHeJ_P0087393 Th protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087394.1 MGP_C3HHeJ_G0032964.1 mouse_genomes_project 7 147684928 147687126 - MGP_C3HHeJ_P0087394 Th protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087395.1 MGP_C3HHeJ_G0032964.1 mouse_genomes_project 7 147684956 147690483 - MGP_C3HHeJ_P0087395 Th protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087396.1 MGP_C3HHeJ_G0032964.1 mouse_genomes_project 7 147687114 147723363 - MGP_C3HHeJ_P0087396 Th protein_coding protein_coding MGP_C3HHeJ_T0081326.1 MGP_C3HHeJ_G0031385.1 mouse_genomes_project 7 12329771 12331435 - MGP_C3HHeJ_P0081326 Vmn1r90 protein_coding protein_coding MGP_C3HHeJ_T0086388.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131533727 131544773 + MGP_C3HHeJ_P0086388 protein_coding protein_coding MGP_C3HHeJ_T0086389.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131534543 131537745 + protein_coding processed_transcript MGP_C3HHeJ_T0086390.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131539744 131545979 + MGP_C3HHeJ_P0086390 protein_coding protein_coding MGP_C3HHeJ_T0086391.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131539931 131544037 + protein_coding retained_intron MGP_C3HHeJ_T0086392.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131540164 131544219 + MGP_C3HHeJ_P0086392 protein_coding protein_coding MGP_C3HHeJ_T0086393.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131540170 131544629 + MGP_C3HHeJ_P0086393 protein_coding protein_coding MGP_C3HHeJ_T0086394.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131541372 131546177 + protein_coding retained_intron MGP_C3HHeJ_T0086395.1 MGP_C3HHeJ_G0032738.1 mouse_genomes_project 7 131541586 131542477 + protein_coding retained_intron MGP_C3HHeJ_T0084103.1 MGP_C3HHeJ_G0032087.1 mouse_genomes_project 7 81411647 81472853 + MGP_C3HHeJ_P0084103 Acan protein_coding protein_coding MGP_C3HHeJ_T0084104.1 MGP_C3HHeJ_G0032087.1 mouse_genomes_project 7 81457517 81472381 + MGP_C3HHeJ_P0084104 Acan protein_coding protein_coding MGP_C3HHeJ_T0082187.1 MGP_C3HHeJ_G0031629.1 mouse_genomes_project 7 26934571 26946736 + MGP_C3HHeJ_P0082187 Zfp626 protein_coding protein_coding MGP_C3HHeJ_T0082188.1 MGP_C3HHeJ_G0031629.1 mouse_genomes_project 7 26934633 26942490 + MGP_C3HHeJ_P0082188 Zfp626 protein_coding protein_coding MGP_C3HHeJ_T0085332.1 MGP_C3HHeJ_G0032480.1 mouse_genomes_project 7 110301122 110302073 - MGP_C3HHeJ_P0085332 Olfr6 protein_coding protein_coding MGP_C3HHeJ_T0084712.1 MGP_C3HHeJ_G0032240.1 mouse_genomes_project 7 101423669 101432635 + MGP_C3HHeJ_P0084712 Lrrc32 protein_coding protein_coding MGP_C3HHeJ_T0084713.1 MGP_C3HHeJ_G0032240.1 mouse_genomes_project 7 101424081 101436578 + MGP_C3HHeJ_P0084713 Lrrc32 protein_coding protein_coding MGP_C3HHeJ_T0084714.1 MGP_C3HHeJ_G0032240.1 mouse_genomes_project 7 101428601 101436229 + MGP_C3HHeJ_P0084714 Lrrc32 protein_coding protein_coding MGP_C3HHeJ_T0081809.1 MGP_C3HHeJ_G0031537.1 mouse_genomes_project 7 23254642 23262547 + MGP_C3HHeJ_P0081809 Irgq protein_coding protein_coding MGP_C3HHeJ_T0085865.1 MGP_C3HHeJ_G0032644.1 mouse_genomes_project 7 125717603 125720379 - Cog7 protein_coding retained_intron MGP_C3HHeJ_T0085866.1 MGP_C3HHeJ_G0032644.1 mouse_genomes_project 7 125717894 125826144 - MGP_C3HHeJ_P0085866 Cog7 protein_coding protein_coding MGP_C3HHeJ_T0085868.1 MGP_C3HHeJ_G0032644.1 mouse_genomes_project 7 125763187 125826144 - MGP_C3HHeJ_P0085868 Cog7 protein_coding protein_coding MGP_C3HHeJ_T0085869.1 MGP_C3HHeJ_G0032644.1 mouse_genomes_project 7 125770327 125826127 - Cog7 protein_coding retained_intron MGP_C3HHeJ_T0100863.1 MGP_C3HHeJ_G0039057.1 mouse_genomes_project 7 128060183 128060312 + Gm25759 snoRNA snoRNA MGP_C3HHeJ_T0015568.1 MGP_C3HHeJ_G0013672.1 mouse_genomes_project 7 33806001 33806728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085711.1 MGP_C3HHeJ_G0032601.1 mouse_genomes_project 7 122405198 122430351 + MGP_C3HHeJ_P0085711 Ccp110 protein_coding protein_coding MGP_C3HHeJ_T0085712.1 MGP_C3HHeJ_G0032601.1 mouse_genomes_project 7 122408068 122430348 + MGP_C3HHeJ_P0085712 Ccp110 protein_coding protein_coding MGP_C3HHeJ_T0085713.1 MGP_C3HHeJ_G0032601.1 mouse_genomes_project 7 122414887 122430343 + Ccp110 protein_coding retained_intron MGP_C3HHeJ_T0085714.1 MGP_C3HHeJ_G0032601.1 mouse_genomes_project 7 122419231 122430351 + Ccp110 protein_coding retained_intron MGP_C3HHeJ_T0085715.1 MGP_C3HHeJ_G0032601.1 mouse_genomes_project 7 122423533 122425789 + Ccp110 protein_coding retained_intron MGP_C3HHeJ_T0083148.1 MGP_C3HHeJ_G0031864.1 mouse_genomes_project 7 45343455 45347671 - MGP_C3HHeJ_P0083148 Clec11a protein_coding protein_coding MGP_C3HHeJ_T0005109.1 MGP_C3HHeJ_G0004343.1 mouse_genomes_project 7 28874072 28876523 - Gm29326 antisense antisense MGP_C3HHeJ_T0082388.1 MGP_C3HHeJ_G0031685.1 mouse_genomes_project 7 28579175 28583254 + MGP_C3HHeJ_P0082388 Ppp1r14a protein_coding protein_coding MGP_C3HHeJ_T0085832.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124624204 124691273 + MGP_C3HHeJ_P0085832 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085833.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124624973 124688046 + MGP_C3HHeJ_P0085833 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085834.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124624991 124641003 + MGP_C3HHeJ_P0085834 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085835.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124632550 124683413 + MGP_C3HHeJ_P0085835 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085836.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124632550 124663381 + MGP_C3HHeJ_P0085836 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085837.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124632562 124687548 + MGP_C3HHeJ_P0085837 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085838.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124659007 124662902 + Eef2k protein_coding retained_intron MGP_C3HHeJ_T0085839.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124672726 124678361 + MGP_C3HHeJ_P0085839 Eef2k protein_coding protein_coding MGP_C3HHeJ_T0085840.1 MGP_C3HHeJ_G0032632.1 mouse_genomes_project 7 124674895 124687630 + Eef2k protein_coding processed_transcript MGP_C3HHeJ_T0086314.1 MGP_C3HHeJ_G0032719.1 mouse_genomes_project 7 131112948 131129656 - MGP_C3HHeJ_P0086314 Qprt protein_coding protein_coding MGP_C3HHeJ_T0086315.1 MGP_C3HHeJ_G0032719.1 mouse_genomes_project 7 131114829 131129471 - Qprt protein_coding processed_transcript MGP_C3HHeJ_T0086316.1 MGP_C3HHeJ_G0032719.1 mouse_genomes_project 7 131123219 131129448 - Qprt protein_coding processed_transcript MGP_C3HHeJ_T0085151.1 MGP_C3HHeJ_G0032407.1 mouse_genomes_project 7 107542139 107551515 + MGP_C3HHeJ_P0085151 protein_coding protein_coding MGP_C3HHeJ_T0085154.1 MGP_C3HHeJ_G0032407.1 mouse_genomes_project 7 107545786 107551223 + MGP_C3HHeJ_P0085154 protein_coding protein_coding MGP_C3HHeJ_T0085155.1 MGP_C3HHeJ_G0032407.1 mouse_genomes_project 7 107545786 107551223 + MGP_C3HHeJ_P0085155 protein_coding protein_coding MGP_C3HHeJ_T0087108.1 MGP_C3HHeJ_G0032912.1 mouse_genomes_project 7 145860870 145867629 + Lrrc56 protein_coding retained_intron MGP_C3HHeJ_T0087109.1 MGP_C3HHeJ_G0032912.1 mouse_genomes_project 7 145861086 145876429 + MGP_C3HHeJ_P0087109 Lrrc56 protein_coding protein_coding MGP_C3HHeJ_T0087110.1 MGP_C3HHeJ_G0032912.1 mouse_genomes_project 7 145861834 145864975 + Lrrc56 protein_coding processed_transcript MGP_C3HHeJ_T0087111.1 MGP_C3HHeJ_G0032912.1 mouse_genomes_project 7 145863625 145866526 + Lrrc56 protein_coding processed_transcript MGP_C3HHeJ_T0100817.1 MGP_C3HHeJ_G0039011.1 mouse_genomes_project 7 45281115 45281205 + Snord88a snoRNA snoRNA MGP_C3HHeJ_T0084253.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82760179 82775744 - MGP_C3HHeJ_P0084253 Unc45a protein_coding protein_coding MGP_C3HHeJ_T0084254.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82760182 82774967 - MGP_C3HHeJ_P0084254 Unc45a protein_coding protein_coding MGP_C3HHeJ_T0084255.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82760183 82774919 - MGP_C3HHeJ_P0084255 Unc45a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084256.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82760213 82774510 - MGP_C3HHeJ_P0084256 Unc45a protein_coding protein_coding MGP_C3HHeJ_T0084257.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82769136 82774954 - MGP_C3HHeJ_P0084257 Unc45a protein_coding protein_coding MGP_C3HHeJ_T0084258.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82773218 82774949 - Unc45a protein_coding retained_intron MGP_C3HHeJ_T0084259.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82773768 82774896 - Unc45a protein_coding retained_intron MGP_C3HHeJ_T0084260.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82774056 82774965 - MGP_C3HHeJ_P0084260 Unc45a protein_coding protein_coding MGP_C3HHeJ_T0084261.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82774060 82774967 - Unc45a protein_coding processed_transcript MGP_C3HHeJ_T0084262.1 MGP_C3HHeJ_G0032115.1 mouse_genomes_project 7 82774451 82774959 - Unc45a protein_coding retained_intron MGP_C3HHeJ_T0008892.1 MGP_C3HHeJ_G0007163.1 mouse_genomes_project 7 102617138 102620341 + Gm10605 lincRNA lincRNA MGP_C3HHeJ_T0008893.1 MGP_C3HHeJ_G0007163.1 mouse_genomes_project 7 102617341 102622914 + Gm10605 lincRNA lincRNA MGP_C3HHeJ_T0086790.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137313760 137459845 - MGP_C3HHeJ_P0086790 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086791.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137313760 137343363 - MGP_C3HHeJ_P0086791 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086792.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137313760 137343605 - MGP_C3HHeJ_P0086792 Ctbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086793.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137313760 137460046 - MGP_C3HHeJ_P0086793 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086794.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137318473 137356773 - MGP_C3HHeJ_P0086794 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086795.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137321942 137458880 - MGP_C3HHeJ_P0086795 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086796.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137342581 137460151 - Ctbp2 protein_coding processed_transcript MGP_C3HHeJ_T0086797.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137342581 137460027 - Ctbp2 protein_coding processed_transcript MGP_C3HHeJ_T0086798.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137342771 137460025 - MGP_C3HHeJ_P0086798 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086799.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137342845 137448330 - Ctbp2 protein_coding processed_transcript MGP_C3HHeJ_T0086800.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137342950 137363100 - Ctbp2 protein_coding processed_transcript MGP_C3HHeJ_T0086801.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137342968 137462334 - Ctbp2 protein_coding processed_transcript MGP_C3HHeJ_T0086802.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137343236 137459295 - MGP_C3HHeJ_P0086802 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086803.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137343278 137460104 - MGP_C3HHeJ_P0086803 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086804.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137358701 137462918 - MGP_C3HHeJ_P0086804 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086805.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137358719 137447422 - MGP_C3HHeJ_P0086805 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086806.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137358720 137459991 - MGP_C3HHeJ_P0086806 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086807.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137358763 137462420 - MGP_C3HHeJ_P0086807 Ctbp2 protein_coding protein_coding MGP_C3HHeJ_T0086808.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137376709 137462420 - Ctbp2 protein_coding processed_transcript MGP_C3HHeJ_T0086809.1 MGP_C3HHeJ_G0032816.1 mouse_genomes_project 7 137415691 137459863 - Ctbp2 protein_coding retained_intron MGP_C3HHeJ_T0087159.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146020295 146046807 + MGP_C3HHeJ_P0087159 Eps8l2 protein_coding protein_coding MGP_C3HHeJ_T0087160.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146020371 146046807 + Eps8l2 protein_coding retained_intron MGP_C3HHeJ_T0087161.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146020402 146038477 + Eps8l2 protein_coding processed_transcript MGP_C3HHeJ_T0087162.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146020419 146038475 + Eps8l2 protein_coding retained_intron MGP_C3HHeJ_T0087163.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146020421 146024406 + MGP_C3HHeJ_P0087163 Eps8l2 protein_coding protein_coding MGP_C3HHeJ_T0087164.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146024071 146038612 + Eps8l2 protein_coding retained_intron MGP_C3HHeJ_T0087165.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146041784 146045202 + Eps8l2 protein_coding retained_intron MGP_C3HHeJ_T0087166.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146041991 146045521 + Eps8l2 protein_coding processed_transcript MGP_C3HHeJ_T0087167.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146044032 146045519 + Eps8l2 protein_coding processed_transcript MGP_C3HHeJ_T0087168.1 MGP_C3HHeJ_G0032922.1 mouse_genomes_project 7 146045323 146046454 + Eps8l2 protein_coding processed_transcript MGP_C3HHeJ_T0081536.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17374328 17405960 + MGP_C3HHeJ_P0081536 Sympk protein_coding protein_coding MGP_C3HHeJ_T0081537.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17374371 17387131 + MGP_C3HHeJ_P0081537 Sympk protein_coding protein_coding MGP_C3HHeJ_T0081538.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17374374 17386245 + Sympk protein_coding retained_intron MGP_C3HHeJ_T0081539.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17374377 17387329 + MGP_C3HHeJ_P0081539 Sympk protein_coding unknown_likely_coding MGP_C3HHeJ_T0081540.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17396915 17401412 + Sympk protein_coding processed_transcript MGP_C3HHeJ_T0081541.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17403697 17405955 + Sympk protein_coding processed_transcript MGP_C3HHeJ_T0081542.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17403764 17405961 + MGP_C3HHeJ_P0081542 Sympk protein_coding protein_coding MGP_C3HHeJ_T0081543.1 MGP_C3HHeJ_G0031457.1 mouse_genomes_project 7 17403794 17405245 + Sympk protein_coding retained_intron MGP_C3HHeJ_T0086725.1 MGP_C3HHeJ_G0032796.1 mouse_genomes_project 7 135579370 135596210 - MGP_C3HHeJ_P0086725 Cuzd1 protein_coding protein_coding MGP_C3HHeJ_T0083392.1 MGP_C3HHeJ_G0031923.1 mouse_genomes_project 7 46473462 46476155 - MGP_C3HHeJ_P0083392 Lin7b protein_coding protein_coding MGP_C3HHeJ_T0083393.1 MGP_C3HHeJ_G0031923.1 mouse_genomes_project 7 46473464 46474174 - Lin7b protein_coding retained_intron MGP_C3HHeJ_T0083394.1 MGP_C3HHeJ_G0031923.1 mouse_genomes_project 7 46474781 46475887 - Lin7b protein_coding retained_intron MGP_C3HHeJ_T0083395.1 MGP_C3HHeJ_G0031923.1 mouse_genomes_project 7 46474835 46475757 - Lin7b protein_coding retained_intron MGP_C3HHeJ_T0083396.1 MGP_C3HHeJ_G0031923.1 mouse_genomes_project 7 46475134 46475918 - Lin7b protein_coding retained_intron MGP_C3HHeJ_T0002250.1 MGP_C3HHeJ_G0002170.1 mouse_genomes_project 7 103519253 103520178 + TEC TEC MGP_C3HHeJ_T0083128.1 MGP_C3HHeJ_G0031860.1 mouse_genomes_project 7 45045261 45078914 + MGP_C3HHeJ_P0083128 protein_coding protein_coding MGP_C3HHeJ_T0081104.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2098571 2117317 + MGP_C3HHeJ_P0081104 Epn1 protein_coding protein_coding MGP_C3HHeJ_T0081105.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2098576 2108247 + MGP_C3HHeJ_P0081105 Epn1 protein_coding protein_coding MGP_C3HHeJ_T0081106.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2098604 2102177 + MGP_C3HHeJ_P0081106 Epn1 protein_coding protein_coding MGP_C3HHeJ_T0081107.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2098612 2117325 + MGP_C3HHeJ_P0081107 Epn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081108.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2098629 2117315 + MGP_C3HHeJ_P0081108 Epn1 protein_coding protein_coding MGP_C3HHeJ_T0081109.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2101925 2113422 + Epn1 protein_coding processed_transcript MGP_C3HHeJ_T0081110.1 MGP_C3HHeJ_G0031287.1 mouse_genomes_project 7 2108123 2111200 + Epn1 protein_coding retained_intron MGP_C3HHeJ_T0005211.1 MGP_C3HHeJ_G0004414.1 mouse_genomes_project 7 125529430 125530369 + 1700069B07Rik antisense antisense MGP_C3HHeJ_T0005212.1 MGP_C3HHeJ_G0004414.1 mouse_genomes_project 7 125529544 125530367 + 1700069B07Rik antisense antisense MGP_C3HHeJ_T0018102.1 MGP_C3HHeJ_G0015414.1 mouse_genomes_project 7 2067481 2073873 - processed_transcript processed_transcript MGP_C3HHeJ_T0018103.1 MGP_C3HHeJ_G0015414.1 mouse_genomes_project 7 2067482 2073788 - processed_transcript processed_transcript MGP_C3HHeJ_T0082292.1 MGP_C3HHeJ_G0031663.1 mouse_genomes_project 7 27973571 27981961 - MGP_C3HHeJ_P0082292 Nfkbib protein_coding protein_coding MGP_C3HHeJ_T0082293.1 MGP_C3HHeJ_G0031663.1 mouse_genomes_project 7 27974352 27981835 - MGP_C3HHeJ_P0082293 Nfkbib protein_coding protein_coding MGP_C3HHeJ_T0082294.1 MGP_C3HHeJ_G0031663.1 mouse_genomes_project 7 27977089 27982833 - MGP_C3HHeJ_P0082294 Nfkbib protein_coding protein_coding MGP_C3HHeJ_T0018198.1 MGP_C3HHeJ_G0015455.1 mouse_genomes_project 7 132530199 132532225 - Gm15503 processed_transcript retained_intron MGP_C3HHeJ_T0018199.1 MGP_C3HHeJ_G0015455.1 mouse_genomes_project 7 132531651 132533573 - Gm15503 processed_transcript sense_intronic MGP_C3HHeJ_T0008729.1 MGP_C3HHeJ_G0007043.1 mouse_genomes_project 7 18172818 18177583 + Gm26600 lincRNA lincRNA MGP_C3HHeJ_T0085352.1 MGP_C3HHeJ_G0032494.1 mouse_genomes_project 7 110949568 110950736 - MGP_C3HHeJ_P0085352 5330417H12Rik protein_coding protein_coding MGP_C3HHeJ_T0085385.1 MGP_C3HHeJ_G0032526.1 mouse_genomes_project 7 112122563 112123619 + MGP_C3HHeJ_P0085385 Olfr512 protein_coding protein_coding MGP_C3HHeJ_T0081660.1 MGP_C3HHeJ_G0031488.1 mouse_genomes_project 7 17966453 17969821 + MGP_C3HHeJ_P0081660 Zfp296 protein_coding protein_coding MGP_C3HHeJ_T0099568.1 MGP_C3HHeJ_G0037762.1 mouse_genomes_project 7 27277386 27277492 + Gm24356 snRNA snRNA MGP_C3HHeJ_T0081591.1 MGP_C3HHeJ_G0031469.1 mouse_genomes_project 7 17596983 17617126 + MGP_C3HHeJ_P0081591 Opa3 protein_coding protein_coding MGP_C3HHeJ_T0081592.1 MGP_C3HHeJ_G0031469.1 mouse_genomes_project 7 17597032 17597759 + Opa3 protein_coding retained_intron MGP_C3HHeJ_T0081593.1 MGP_C3HHeJ_G0031469.1 mouse_genomes_project 7 17597032 17626053 + MGP_C3HHeJ_P0081593 Opa3 protein_coding protein_coding MGP_C3HHeJ_T0082386.1 MGP_C3HHeJ_G0031684.1 mouse_genomes_project 7 28543799 28571625 - MGP_C3HHeJ_P0082386 Spint2 protein_coding protein_coding MGP_C3HHeJ_T0082387.1 MGP_C3HHeJ_G0031684.1 mouse_genomes_project 7 28543799 28571625 - MGP_C3HHeJ_P0082387 Spint2 protein_coding protein_coding MGP_C3HHeJ_T0082796.1 MGP_C3HHeJ_G0031770.1 mouse_genomes_project 7 33783317 33784501 + MGP_C3HHeJ_P0082796 Scgb1b24 protein_coding protein_coding MGP_C3HHeJ_T0081447.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14843820 14876085 + MGP_C3HHeJ_P0081447 Prkd2 protein_coding protein_coding MGP_C3HHeJ_T0081448.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14843983 14876172 + MGP_C3HHeJ_P0081448 Prkd2 protein_coding protein_coding MGP_C3HHeJ_T0081449.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14845079 14849660 + Prkd2 protein_coding processed_transcript MGP_C3HHeJ_T0081450.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14846153 14848530 + Prkd2 protein_coding processed_transcript MGP_C3HHeJ_T0081451.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14846720 14851397 + Prkd2 protein_coding retained_intron MGP_C3HHeJ_T0081452.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14849603 14856014 + Prkd2 protein_coding retained_intron MGP_C3HHeJ_T0081453.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14869201 14875603 + Prkd2 protein_coding retained_intron MGP_C3HHeJ_T0081454.1 MGP_C3HHeJ_G0031420.1 mouse_genomes_project 7 14874962 14875849 + Prkd2 protein_coding retained_intron MGP_C3HHeJ_T0002155.1 MGP_C3HHeJ_G0002076.1 mouse_genomes_project 7 241232 241567 + TEC TEC MGP_C3HHeJ_T0084817.1 MGP_C3HHeJ_G0032269.1 mouse_genomes_project 7 103533383 103545519 + Ucp3 protein_coding retained_intron MGP_C3HHeJ_T0084818.1 MGP_C3HHeJ_G0032269.1 mouse_genomes_project 7 103533384 103546530 + MGP_C3HHeJ_P0084818 Ucp3 protein_coding protein_coding MGP_C3HHeJ_T0084819.1 MGP_C3HHeJ_G0032269.1 mouse_genomes_project 7 103533386 103545399 + MGP_C3HHeJ_P0084819 Ucp3 protein_coding protein_coding MGP_C3HHeJ_T0084820.1 MGP_C3HHeJ_G0032269.1 mouse_genomes_project 7 103533387 103545502 + Ucp3 protein_coding retained_intron MGP_C3HHeJ_T0085924.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126832160 126842536 + MGP_C3HHeJ_P0085924 Rbbp6 protein_coding protein_coding MGP_C3HHeJ_T0085925.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126837091 126870055 + MGP_C3HHeJ_P0085925 Rbbp6 protein_coding protein_coding MGP_C3HHeJ_T0085926.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126837227 126850913 + MGP_C3HHeJ_P0085926 Rbbp6 protein_coding protein_coding MGP_C3HHeJ_T0085927.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126837445 126870055 + MGP_C3HHeJ_P0085927 Rbbp6 protein_coding protein_coding MGP_C3HHeJ_T0085928.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126842167 126845289 + Rbbp6 protein_coding retained_intron MGP_C3HHeJ_T0085929.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126842385 126850084 + Rbbp6 protein_coding retained_intron MGP_C3HHeJ_T0085930.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126849031 126870057 + MGP_C3HHeJ_P0085930 Rbbp6 protein_coding protein_coding MGP_C3HHeJ_T0085931.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126849069 126852223 + Rbbp6 protein_coding retained_intron MGP_C3HHeJ_T0085932.1 MGP_C3HHeJ_G0032656.1 mouse_genomes_project 7 126856650 126859033 + Rbbp6 protein_coding retained_intron MGP_C3HHeJ_T0082318.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28043925 28050179 + Ech1 protein_coding retained_intron MGP_C3HHeJ_T0082319.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28043925 28052294 + MGP_C3HHeJ_P0082319 Ech1 protein_coding protein_coding MGP_C3HHeJ_T0082320.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28044057 28045366 + Ech1 protein_coding retained_intron MGP_C3HHeJ_T0082321.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28044666 28051262 + Ech1 protein_coding processed_transcript MGP_C3HHeJ_T0082322.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28044912 28052294 + MGP_C3HHeJ_P0082322 Ech1 protein_coding protein_coding MGP_C3HHeJ_T0082323.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28050187 28052294 + Ech1 protein_coding retained_intron MGP_C3HHeJ_T0082324.1 MGP_C3HHeJ_G0031667.1 mouse_genomes_project 7 28051279 28052294 + Ech1 protein_coding retained_intron MGP_C3HHeJ_T0015717.1 MGP_C3HHeJ_G0013821.1 mouse_genomes_project 7 130745808 130746170 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015546.1 MGP_C3HHeJ_G0013650.1 mouse_genomes_project 7 24777472 24777824 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087388.1 MGP_C3HHeJ_G0032962.1 mouse_genomes_project 7 147544456 147545275 - MGP_C3HHeJ_P0087388 Rpl13-ps3 protein_coding protein_coding MGP_C3HHeJ_T0083050.1 MGP_C3HHeJ_G0031829.1 mouse_genomes_project 7 44433316 44434493 + MGP_C3HHeJ_P0083050 Nkg7 protein_coding protein_coding MGP_C3HHeJ_T0083051.1 MGP_C3HHeJ_G0031829.1 mouse_genomes_project 7 44433373 44434490 + MGP_C3HHeJ_P0083051 Nkg7 protein_coding protein_coding MGP_C3HHeJ_T0083052.1 MGP_C3HHeJ_G0031829.1 mouse_genomes_project 7 44433747 44434493 + Nkg7 protein_coding retained_intron MGP_C3HHeJ_T0002160.1 MGP_C3HHeJ_G0002081.1 mouse_genomes_project 7 15988089 15990251 - TEC TEC MGP_C3HHeJ_T0008746.1 MGP_C3HHeJ_G0007058.1 mouse_genomes_project 7 34326155 34329915 - Gm12762 lincRNA lincRNA MGP_C3HHeJ_T0008878.1 MGP_C3HHeJ_G0007151.1 mouse_genomes_project 7 90959316 90966100 - Gm26522 lincRNA lincRNA MGP_C3HHeJ_T0083350.1 MGP_C3HHeJ_G0031912.1 mouse_genomes_project 7 46262371 46274633 + MGP_C3HHeJ_P0083350 Slc17a7 protein_coding protein_coding MGP_C3HHeJ_T0015650.1 MGP_C3HHeJ_G0013754.1 mouse_genomes_project 7 82947115 82947527 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015625.1 MGP_C3HHeJ_G0013729.1 mouse_genomes_project 7 63256489 63256948 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102307.1 MGP_C3HHeJ_G0040270.1 mouse_genomes_project 7 107251350 107252305 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081654.1 MGP_C3HHeJ_G0031487.1 mouse_genomes_project 7 17953215 17962927 - MGP_C3HHeJ_P0081654 Gemin7 protein_coding protein_coding MGP_C3HHeJ_T0081655.1 MGP_C3HHeJ_G0031487.1 mouse_genomes_project 7 17953218 17962432 - MGP_C3HHeJ_P0081655 Gemin7 protein_coding protein_coding MGP_C3HHeJ_T0081656.1 MGP_C3HHeJ_G0031487.1 mouse_genomes_project 7 17953356 17962057 - MGP_C3HHeJ_P0081656 Gemin7 protein_coding protein_coding MGP_C3HHeJ_T0081657.1 MGP_C3HHeJ_G0031487.1 mouse_genomes_project 7 17953388 17962178 - MGP_C3HHeJ_P0081657 Gemin7 protein_coding protein_coding MGP_C3HHeJ_T0081658.1 MGP_C3HHeJ_G0031487.1 mouse_genomes_project 7 17953515 17962474 - MGP_C3HHeJ_P0081658 Gemin7 protein_coding protein_coding MGP_C3HHeJ_T0081659.1 MGP_C3HHeJ_G0031487.1 mouse_genomes_project 7 17953693 17962263 - MGP_C3HHeJ_P0081659 Gemin7 protein_coding protein_coding MGP_C3HHeJ_T0084596.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99050104 99804051 + MGP_C3HHeJ_P0084596 Tenm4 protein_coding protein_coding MGP_C3HHeJ_T0084597.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99083167 99314759 + Tenm4 protein_coding retained_intron MGP_C3HHeJ_T0084598.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99083217 99379717 + Tenm4 protein_coding processed_transcript MGP_C3HHeJ_T0084599.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99083648 99316587 + Tenm4 protein_coding retained_intron MGP_C3HHeJ_T0084600.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99083656 99435648 + MGP_C3HHeJ_P0084600 Tenm4 protein_coding protein_coding MGP_C3HHeJ_T0084601.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99084139 99806569 + MGP_C3HHeJ_P0084601 Tenm4 protein_coding protein_coding MGP_C3HHeJ_T0084602.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99085173 99804040 + MGP_C3HHeJ_P0084602 Tenm4 protein_coding protein_coding MGP_C3HHeJ_T0084603.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99404476 99435648 + MGP_C3HHeJ_P0084603 Tenm4 protein_coding protein_coding MGP_C3HHeJ_T0084604.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99527908 99621047 + Tenm4 protein_coding retained_intron MGP_C3HHeJ_T0084605.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99668293 99688758 + MGP_C3HHeJ_P0084605 Tenm4 protein_coding protein_coding MGP_C3HHeJ_T0084606.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99687633 99689596 + Tenm4 protein_coding processed_transcript MGP_C3HHeJ_T0084607.1 MGP_C3HHeJ_G0032217.1 mouse_genomes_project 7 99687633 99735000 + Tenm4 protein_coding retained_intron MGP_C3HHeJ_T0087219.1 MGP_C3HHeJ_G0032928.1 mouse_genomes_project 7 146131594 146135812 + MGP_C3HHeJ_P0087219 Rplp2 protein_coding protein_coding MGP_C3HHeJ_T0087220.1 MGP_C3HHeJ_G0032928.1 mouse_genomes_project 7 146131855 146132841 + Rplp2 protein_coding retained_intron MGP_C3HHeJ_T0087221.1 MGP_C3HHeJ_G0032928.1 mouse_genomes_project 7 146131893 146133252 + Rplp2 protein_coding retained_intron MGP_C3HHeJ_T0087222.1 MGP_C3HHeJ_G0032928.1 mouse_genomes_project 7 146131936 146135577 + MGP_C3HHeJ_P0087222 Rplp2 protein_coding protein_coding MGP_C3HHeJ_T0087223.1 MGP_C3HHeJ_G0032928.1 mouse_genomes_project 7 146132074 146135577 + MGP_C3HHeJ_P0087223 Rplp2 protein_coding protein_coding MGP_C3HHeJ_T0087224.1 MGP_C3HHeJ_G0032928.1 mouse_genomes_project 7 146135048 146135576 + Rplp2 protein_coding processed_transcript MGP_C3HHeJ_T0015611.1 MGP_C3HHeJ_G0013715.1 mouse_genomes_project 7 52946770 52946890 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086860.1 MGP_C3HHeJ_G0032826.1 mouse_genomes_project 7 139075801 139614035 + MGP_C3HHeJ_P0086860 Dock1 protein_coding protein_coding MGP_C3HHeJ_T0084357.1 MGP_C3HHeJ_G0032130.1 mouse_genomes_project 7 83706096 83837269 + MGP_C3HHeJ_P0084357 Pde8a protein_coding protein_coding MGP_C3HHeJ_T0084358.1 MGP_C3HHeJ_G0032130.1 mouse_genomes_project 7 83797007 83816455 + Pde8a protein_coding processed_transcript MGP_C3HHeJ_T0084359.1 MGP_C3HHeJ_G0032130.1 mouse_genomes_project 7 83807993 83820597 + Pde8a protein_coding processed_transcript MGP_C3HHeJ_T0015519.1 MGP_C3HHeJ_G0013623.1 mouse_genomes_project 7 14482441 14483214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085056.1 MGP_C3HHeJ_G0032327.1 mouse_genomes_project 7 105978110 105996859 - MGP_C3HHeJ_P0085056 Olfr78 protein_coding protein_coding MGP_C3HHeJ_T0085057.1 MGP_C3HHeJ_G0032327.1 mouse_genomes_project 7 105978110 105996859 - MGP_C3HHeJ_P0085057 Olfr78 protein_coding protein_coding MGP_C3HHeJ_T0086878.1 MGP_C3HHeJ_G0032837.1 mouse_genomes_project 7 141949382 141980968 + MGP_C3HHeJ_P0086878 protein_coding protein_coding MGP_C3HHeJ_T0086879.1 MGP_C3HHeJ_G0032837.1 mouse_genomes_project 7 141961472 141980357 + MGP_C3HHeJ_P0086879 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083997.1 MGP_C3HHeJ_G0032066.1 mouse_genomes_project 7 69925354 70220670 + MGP_C3HHeJ_P0083997 Igf1r protein_coding protein_coding MGP_C3HHeJ_T0010834.1 MGP_C3HHeJ_G0008967.1 mouse_genomes_project 7 131776980 131777056 + Mir762 miRNA miRNA MGP_C3HHeJ_T0085824.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124505811 124584964 + MGP_C3HHeJ_P0085824 Vwa3a protein_coding protein_coding MGP_C3HHeJ_T0085825.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124505811 124568888 + MGP_C3HHeJ_P0085825 Vwa3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085826.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124506301 124585165 + MGP_C3HHeJ_P0085826 Vwa3a protein_coding protein_coding MGP_C3HHeJ_T0085827.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124506301 124584961 + MGP_C3HHeJ_P0085827 Vwa3a protein_coding protein_coding MGP_C3HHeJ_T0085828.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124506365 124584834 + MGP_C3HHeJ_P0085828 Vwa3a protein_coding unknown_likely_coding MGP_C3HHeJ_T0085829.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124557957 124568889 + MGP_C3HHeJ_P0085829 Vwa3a protein_coding protein_coding MGP_C3HHeJ_T0085830.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124559615 124568889 + Vwa3a protein_coding processed_transcript MGP_C3HHeJ_T0085831.1 MGP_C3HHeJ_G0032631.1 mouse_genomes_project 7 124562045 124571405 + MGP_C3HHeJ_P0085831 Vwa3a protein_coding protein_coding MGP_C3HHeJ_T0081528.1 MGP_C3HHeJ_G0031451.1 mouse_genomes_project 7 17265051 17311801 + MGP_C3HHeJ_P0081528 protein_coding protein_coding MGP_C3HHeJ_T0010849.1 MGP_C3HHeJ_G0008982.1 mouse_genomes_project 7 148371070 148371159 - Mir7064 miRNA miRNA MGP_C3HHeJ_T0085265.1 MGP_C3HHeJ_G0032455.1 mouse_genomes_project 7 108932259 108951610 + Dnhd1 protein_coding processed_transcript MGP_C3HHeJ_T0085271.1 MGP_C3HHeJ_G0032455.1 mouse_genomes_project 7 108932276 108977451 + Dnhd1 protein_coding processed_transcript MGP_C3HHeJ_T0085275.1 MGP_C3HHeJ_G0032455.1 mouse_genomes_project 7 108943407 109013491 + MGP_C3HHeJ_P0085275 Dnhd1 protein_coding protein_coding MGP_C3HHeJ_T0085276.1 MGP_C3HHeJ_G0032455.1 mouse_genomes_project 7 108943788 109013459 + MGP_C3HHeJ_P0085276 Dnhd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085277.1 MGP_C3HHeJ_G0032455.1 mouse_genomes_project 7 108966315 108970540 + Dnhd1 protein_coding retained_intron MGP_C3HHeJ_T0085278.1 MGP_C3HHeJ_G0032455.1 mouse_genomes_project 7 108970363 108977444 + MGP_C3HHeJ_P0085278 Dnhd1 protein_coding protein_coding MGP_C3HHeJ_T0085879.1 MGP_C3HHeJ_G0032647.1 mouse_genomes_project 7 125913773 125928793 + MGP_C3HHeJ_P0085879 Ubfd1 protein_coding protein_coding MGP_C3HHeJ_T0085880.1 MGP_C3HHeJ_G0032647.1 mouse_genomes_project 7 125913806 125924231 + Ubfd1 protein_coding retained_intron MGP_C3HHeJ_T0085881.1 MGP_C3HHeJ_G0032647.1 mouse_genomes_project 7 125914038 125918005 + Ubfd1 protein_coding retained_intron MGP_C3HHeJ_T0085882.1 MGP_C3HHeJ_G0032647.1 mouse_genomes_project 7 125914045 125915578 + Ubfd1 protein_coding processed_transcript MGP_C3HHeJ_T0085883.1 MGP_C3HHeJ_G0032647.1 mouse_genomes_project 7 125915497 125925210 + MGP_C3HHeJ_P0085883 Ubfd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086364.1 MGP_C3HHeJ_G0032731.1 mouse_genomes_project 7 131408876 131454106 - MGP_C3HHeJ_P0086364 Zfp747 protein_coding protein_coding MGP_C3HHeJ_T0086365.1 MGP_C3HHeJ_G0032731.1 mouse_genomes_project 7 131409414 131410889 - MGP_C3HHeJ_P0086365 Zfp747 protein_coding protein_coding MGP_C3HHeJ_T0086366.1 MGP_C3HHeJ_G0032731.1 mouse_genomes_project 7 131409452 131410892 - Zfp747 protein_coding retained_intron MGP_C3HHeJ_T0084383.1 MGP_C3HHeJ_G0032137.1 mouse_genomes_project 7 84113676 84227339 - MGP_C3HHeJ_P0084383 Homer2 protein_coding protein_coding MGP_C3HHeJ_T0084384.1 MGP_C3HHeJ_G0032137.1 mouse_genomes_project 7 84113676 84213280 - MGP_C3HHeJ_P0084384 Homer2 protein_coding protein_coding MGP_C3HHeJ_T0084385.1 MGP_C3HHeJ_G0032137.1 mouse_genomes_project 7 84123448 84227177 - MGP_C3HHeJ_P0084385 Homer2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084492.1 MGP_C3HHeJ_G0032182.1 mouse_genomes_project 7 89252072 89253080 - MGP_C3HHeJ_P0084492 Olfr294 protein_coding protein_coding MGP_C3HHeJ_T0086356.1 MGP_C3HHeJ_G0032729.1 mouse_genomes_project 7 131323486 131363771 + MGP_C3HHeJ_P0086356 Itgal protein_coding protein_coding MGP_C3HHeJ_T0086357.1 MGP_C3HHeJ_G0032729.1 mouse_genomes_project 7 131323517 131363772 + MGP_C3HHeJ_P0086357 Itgal protein_coding protein_coding MGP_C3HHeJ_T0086358.1 MGP_C3HHeJ_G0032729.1 mouse_genomes_project 7 131323541 131359925 + MGP_C3HHeJ_P0086358 Itgal protein_coding protein_coding MGP_C3HHeJ_T0086359.1 MGP_C3HHeJ_G0032729.1 mouse_genomes_project 7 131323636 131362362 + MGP_C3HHeJ_P0086359 Itgal protein_coding protein_coding MGP_C3HHeJ_T0086360.1 MGP_C3HHeJ_G0032729.1 mouse_genomes_project 7 131324656 131328648 + Itgal protein_coding processed_transcript MGP_C3HHeJ_T0086361.1 MGP_C3HHeJ_G0032729.1 mouse_genomes_project 7 131338446 131363771 + MGP_C3HHeJ_P0086361 Itgal protein_coding protein_coding MGP_C3HHeJ_T0083964.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69183120 69325003 - MGP_C3HHeJ_P0083964 Mef2a protein_coding protein_coding MGP_C3HHeJ_T0083965.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69183875 69325003 - MGP_C3HHeJ_P0083965 Mef2a protein_coding protein_coding MGP_C3HHeJ_T0083966.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69184041 69268004 - MGP_C3HHeJ_P0083966 Mef2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083967.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69185996 69325003 - MGP_C3HHeJ_P0083967 Mef2a protein_coding protein_coding MGP_C3HHeJ_T0083968.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69186104 69325003 - MGP_C3HHeJ_P0083968 Mef2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083969.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69186164 69325003 - MGP_C3HHeJ_P0083969 Mef2a protein_coding protein_coding MGP_C3HHeJ_T0083970.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69203793 69325003 - MGP_C3HHeJ_P0083970 Mef2a protein_coding protein_coding MGP_C3HHeJ_T0083971.1 MGP_C3HHeJ_G0032062.1 mouse_genomes_project 7 69300486 69324972 - Mef2a protein_coding processed_transcript MGP_C3HHeJ_T0085101.1 MGP_C3HHeJ_G0032369.1 mouse_genomes_project 7 106910506 106911460 - MGP_C3HHeJ_P0085101 Olfr623 protein_coding protein_coding MGP_C3HHeJ_T0081702.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18180911 18197030 - Cblc protein_coding processed_transcript MGP_C3HHeJ_T0081703.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18181649 18187543 - Cblc protein_coding processed_transcript MGP_C3HHeJ_T0081704.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18181742 18206753 - MGP_C3HHeJ_P0081704 Cblc protein_coding protein_coding MGP_C3HHeJ_T0081705.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18181742 18206769 - MGP_C3HHeJ_P0081705 Cblc protein_coding protein_coding MGP_C3HHeJ_T0081706.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18188325 18200957 - Cblc protein_coding processed_transcript MGP_C3HHeJ_T0081707.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18198398 18201926 - Cblc protein_coding processed_transcript MGP_C3HHeJ_T0081708.1 MGP_C3HHeJ_G0031499.1 mouse_genomes_project 7 18200571 18206765 - Cblc protein_coding retained_intron MGP_C3HHeJ_T0008888.1 MGP_C3HHeJ_G0007159.1 mouse_genomes_project 7 101316054 101345448 - Gm44507 lincRNA lincRNA MGP_C3HHeJ_T0097927.1 MGP_C3HHeJ_G0036139.1 mouse_genomes_project 7 111710486 111711432 - pseudogene pseudogene MGP_C3HHeJ_T0005202.1 MGP_C3HHeJ_G0004409.1 mouse_genomes_project 7 119635763 119636335 + Sox6os antisense antisense MGP_C3HHeJ_T0086893.1 MGP_C3HHeJ_G0032841.1 mouse_genomes_project 7 143427139 143444814 - MGP_C3HHeJ_P0086893 Bnip3 protein_coding protein_coding MGP_C3HHeJ_T0086894.1 MGP_C3HHeJ_G0032841.1 mouse_genomes_project 7 143429588 143444803 - Bnip3 protein_coding processed_transcript MGP_C3HHeJ_T0086895.1 MGP_C3HHeJ_G0032841.1 mouse_genomes_project 7 143429917 143433584 - Bnip3 protein_coding processed_transcript MGP_C3HHeJ_T0086896.1 MGP_C3HHeJ_G0032841.1 mouse_genomes_project 7 143433847 143444827 - Bnip3 protein_coding processed_transcript MGP_C3HHeJ_T0086897.1 MGP_C3HHeJ_G0032841.1 mouse_genomes_project 7 143434017 143444787 - Bnip3 protein_coding processed_transcript MGP_C3HHeJ_T0085850.1 MGP_C3HHeJ_G0032637.1 mouse_genomes_project 7 124830651 124873018 + MGP_C3HHeJ_P0085850 Mettl9 protein_coding protein_coding MGP_C3HHeJ_T0010813.1 MGP_C3HHeJ_G0008946.1 mouse_genomes_project 7 81881166 81881256 + Mir9-3 miRNA miRNA MGP_C3HHeJ_T0082630.1 MGP_C3HHeJ_G0031737.1 mouse_genomes_project 7 30018532 30027828 - MGP_C3HHeJ_P0082630 Cox6b1 protein_coding protein_coding MGP_C3HHeJ_T0081327.1 MGP_C3HHeJ_G0031386.1 mouse_genomes_project 7 12330236 12331279 - MGP_C3HHeJ_P0081327 protein_coding protein_coding MGP_C3HHeJ_T0015641.1 MGP_C3HHeJ_G0013745.1 mouse_genomes_project 7 77085958 77086088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102214.1 MGP_C3HHeJ_G0040177.1 mouse_genomes_project 7 33638448 33638818 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081653.1 MGP_C3HHeJ_G0031486.1 mouse_genomes_project 7 17916025 17950724 - MGP_C3HHeJ_P0081653 Ppp1r37 protein_coding protein_coding MGP_C3HHeJ_T0082848.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34764821 34781518 - MGP_C3HHeJ_P0082848 Kctd15 protein_coding protein_coding MGP_C3HHeJ_T0082849.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34764822 34779957 - MGP_C3HHeJ_P0082849 Kctd15 protein_coding protein_coding MGP_C3HHeJ_T0082850.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34764826 34783503 - MGP_C3HHeJ_P0082850 Kctd15 protein_coding protein_coding MGP_C3HHeJ_T0082851.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34765989 34775868 - Kctd15 protein_coding processed_transcript MGP_C3HHeJ_T0082852.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34777110 34781509 - MGP_C3HHeJ_P0082852 Kctd15 protein_coding protein_coding MGP_C3HHeJ_T0082853.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34779751 34780146 - Kctd15 protein_coding processed_transcript MGP_C3HHeJ_T0082854.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34779751 34780432 - Kctd15 protein_coding processed_transcript MGP_C3HHeJ_T0082855.1 MGP_C3HHeJ_G0031782.1 mouse_genomes_project 7 34783363 34784726 - Kctd15 protein_coding processed_transcript MGP_C3HHeJ_T0081258.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10606515 10613322 + MGP_C3HHeJ_P0081258 Trim28 protein_coding protein_coding MGP_C3HHeJ_T0081259.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10609902 10611411 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081260.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10610114 10610789 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081261.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10610306 10611886 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081262.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10610691 10611652 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081263.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10611166 10612213 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081264.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10611377 10612282 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081265.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10611990 10612634 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0081266.1 MGP_C3HHeJ_G0031362.1 mouse_genomes_project 7 10612658 10613319 + Trim28 protein_coding retained_intron MGP_C3HHeJ_T0085080.1 MGP_C3HHeJ_G0032348.1 mouse_genomes_project 7 106440309 106441293 + MGP_C3HHeJ_P0085080 Olfr593 protein_coding protein_coding MGP_C3HHeJ_T0081217.1 MGP_C3HHeJ_G0031350.1 mouse_genomes_project 7 10126735 10151780 - MGP_C3HHeJ_P0081217 Vmn2r53 protein_coding protein_coding MGP_C3HHeJ_T0018110.1 MGP_C3HHeJ_G0015418.1 mouse_genomes_project 7 26509949 26511183 + Gm44924 processed_transcript processed_transcript MGP_C3HHeJ_T0083493.1 MGP_C3HHeJ_G0031948.1 mouse_genomes_project 7 46851788 46860325 - MGP_C3HHeJ_P0083493 Sphk2 protein_coding protein_coding MGP_C3HHeJ_T0083494.1 MGP_C3HHeJ_G0031948.1 mouse_genomes_project 7 46852585 46860225 - MGP_C3HHeJ_P0083494 Sphk2 protein_coding protein_coding MGP_C3HHeJ_T0083495.1 MGP_C3HHeJ_G0031948.1 mouse_genomes_project 7 46852603 46857550 - MGP_C3HHeJ_P0083495 Sphk2 protein_coding protein_coding MGP_C3HHeJ_T0083817.1 MGP_C3HHeJ_G0032030.1 mouse_genomes_project 7 64151692 64153344 + MGP_C3HHeJ_P0083817 Ndn protein_coding protein_coding MGP_C3HHeJ_T0018174.1 MGP_C3HHeJ_G0015442.1 mouse_genomes_project 7 99802325 99839662 - C230038L03Rik processed_transcript antisense MGP_C3HHeJ_T0018175.1 MGP_C3HHeJ_G0015442.1 mouse_genomes_project 7 99814209 99842765 - C230038L03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018176.1 MGP_C3HHeJ_G0015442.1 mouse_genomes_project 7 99840205 99844089 - C230038L03Rik processed_transcript antisense MGP_C3HHeJ_T0018177.1 MGP_C3HHeJ_G0015442.1 mouse_genomes_project 7 99840537 99844495 - C230038L03Rik processed_transcript antisense MGP_C3HHeJ_T0081498.1 MGP_C3HHeJ_G0031438.1 mouse_genomes_project 7 16360630 16366001 + MGP_C3HHeJ_P0081498 Igfl3 protein_coding protein_coding MGP_C3HHeJ_T0010832.1 MGP_C3HHeJ_G0008965.1 mouse_genomes_project 7 131543740 131543877 + Mir7060 miRNA miRNA MGP_C3HHeJ_T0085005.1 MGP_C3HHeJ_G0032304.1 mouse_genomes_project 7 105301732 105312458 - MGP_C3HHeJ_P0085005 Chrna10 protein_coding protein_coding MGP_C3HHeJ_T0082180.1 MGP_C3HHeJ_G0031627.1 mouse_genomes_project 7 26788129 26811555 + MGP_C3HHeJ_P0082180 Zfp607b protein_coding protein_coding MGP_C3HHeJ_T0015659.1 MGP_C3HHeJ_G0013763.1 mouse_genomes_project 7 88336448 88337025 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002255.1 MGP_C3HHeJ_G0002175.1 mouse_genomes_project 7 125671734 125673348 - TEC TEC MGP_C3HHeJ_T0087525.1 MGP_C3HHeJ_G0032992.1 mouse_genomes_project 7 149825192 149835157 - MGP_C3HHeJ_P0087525 Ccnd1 protein_coding protein_coding MGP_C3HHeJ_T0087526.1 MGP_C3HHeJ_G0032992.1 mouse_genomes_project 7 149832581 149833484 - Ccnd1 protein_coding retained_intron MGP_C3HHeJ_T0005128.1 MGP_C3HHeJ_G0004359.1 mouse_genomes_project 7 35729974 35731543 + B230322F03Rik antisense antisense MGP_C3HHeJ_T0102166.1 MGP_C3HHeJ_G0040130.1 mouse_genomes_project 7 9933284 9933896 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102149.1 MGP_C3HHeJ_G0040113.1 mouse_genomes_project 7 7613409 7643607 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084201.1 MGP_C3HHeJ_G0032107.1 mouse_genomes_project 7 82612146 82653486 + MGP_C3HHeJ_P0084201 Sema4b protein_coding protein_coding MGP_C3HHeJ_T0084202.1 MGP_C3HHeJ_G0032107.1 mouse_genomes_project 7 82612183 82648791 + Sema4b protein_coding retained_intron MGP_C3HHeJ_T0084203.1 MGP_C3HHeJ_G0032107.1 mouse_genomes_project 7 82624400 82653370 + MGP_C3HHeJ_P0084203 Sema4b protein_coding protein_coding MGP_C3HHeJ_T0084204.1 MGP_C3HHeJ_G0032107.1 mouse_genomes_project 7 82624495 82641008 + Sema4b protein_coding retained_intron MGP_C3HHeJ_T0085449.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113430425 113449153 - MGP_C3HHeJ_P0085449 Tmem41b protein_coding protein_coding MGP_C3HHeJ_T0085450.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113432967 113449631 - MGP_C3HHeJ_P0085450 Tmem41b protein_coding protein_coding MGP_C3HHeJ_T0085451.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113433757 113440730 - Tmem41b protein_coding retained_intron MGP_C3HHeJ_T0085452.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113437432 113448864 - MGP_C3HHeJ_P0085452 Tmem41b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085453.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113437432 113448977 - MGP_C3HHeJ_P0085453 Tmem41b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085454.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113437499 113448951 - MGP_C3HHeJ_P0085454 Tmem41b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085455.1 MGP_C3HHeJ_G0032549.1 mouse_genomes_project 7 113441790 113448961 - Tmem41b protein_coding retained_intron MGP_C3HHeJ_T0011589.1 MGP_C3HHeJ_G0009722.1 mouse_genomes_project 7 40851373 40851645 + Gm24910 misc_RNA misc_RNA MGP_C3HHeJ_T0083425.1 MGP_C3HHeJ_G0031931.1 mouse_genomes_project 7 46591035 46609325 - MGP_C3HHeJ_P0083425 Dhdh protein_coding protein_coding MGP_C3HHeJ_T0083426.1 MGP_C3HHeJ_G0031931.1 mouse_genomes_project 7 46593500 46598425 - Dhdh protein_coding processed_transcript MGP_C3HHeJ_T0102216.1 MGP_C3HHeJ_G0040179.1 mouse_genomes_project 7 33876082 33877845 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008742.1 MGP_C3HHeJ_G0007054.1 mouse_genomes_project 7 29573559 29575819 + lincRNA lincRNA MGP_C3HHeJ_T0082304.1 MGP_C3HHeJ_G0031665.1 mouse_genomes_project 7 28004257 28015943 + MGP_C3HHeJ_P0082304 Rinl protein_coding protein_coding MGP_C3HHeJ_T0081489.1 MGP_C3HHeJ_G0031432.1 mouse_genomes_project 7 15232891 15253208 + MGP_C3HHeJ_P0081489 Psg29 protein_coding protein_coding MGP_C3HHeJ_T0081845.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23667672 23673126 + MGP_C3HHeJ_P0081845 Rps19 protein_coding protein_coding MGP_C3HHeJ_T0081846.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23667934 23673126 + MGP_C3HHeJ_P0081846 Rps19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081847.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23667936 23671061 + Rps19 protein_coding retained_intron MGP_C3HHeJ_T0081848.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23667937 23673122 + MGP_C3HHeJ_P0081848 Rps19 protein_coding protein_coding MGP_C3HHeJ_T0081849.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23667952 23672274 + MGP_C3HHeJ_P0081849 Rps19 protein_coding protein_coding MGP_C3HHeJ_T0081850.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23668015 23673126 + MGP_C3HHeJ_P0081850 Rps19 protein_coding protein_coding MGP_C3HHeJ_T0081851.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23668114 23672254 + MGP_C3HHeJ_P0081851 Rps19 protein_coding protein_coding MGP_C3HHeJ_T0081852.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23668218 23672296 + MGP_C3HHeJ_P0081852 Rps19 protein_coding protein_coding MGP_C3HHeJ_T0081853.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23671491 23673124 + Rps19 protein_coding retained_intron MGP_C3HHeJ_T0081854.1 MGP_C3HHeJ_G0031551.1 mouse_genomes_project 7 23672068 23673124 + Rps19 protein_coding processed_transcript MGP_C3HHeJ_T0081785.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23109392 23118655 + Smg9 protein_coding retained_intron MGP_C3HHeJ_T0081786.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23109392 23133176 + MGP_C3HHeJ_P0081786 Smg9 protein_coding protein_coding MGP_C3HHeJ_T0081787.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23109495 23116233 + Smg9 protein_coding retained_intron MGP_C3HHeJ_T0081788.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23109692 23117952 + MGP_C3HHeJ_P0081788 Smg9 protein_coding protein_coding MGP_C3HHeJ_T0081789.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23125113 23131329 + Smg9 protein_coding retained_intron MGP_C3HHeJ_T0081790.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23125355 23131329 + MGP_C3HHeJ_P0081790 Smg9 protein_coding protein_coding MGP_C3HHeJ_T0081791.1 MGP_C3HHeJ_G0031532.1 mouse_genomes_project 7 23130599 23133037 + Smg9 protein_coding retained_intron MGP_C3HHeJ_T0084696.1 MGP_C3HHeJ_G0032237.1 mouse_genomes_project 7 101145944 101234091 - MGP_C3HHeJ_P0084696 Acer3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084697.1 MGP_C3HHeJ_G0032237.1 mouse_genomes_project 7 101146337 101234013 - MGP_C3HHeJ_P0084697 Acer3 protein_coding protein_coding MGP_C3HHeJ_T0084698.1 MGP_C3HHeJ_G0032237.1 mouse_genomes_project 7 101153826 101157755 - Acer3 protein_coding retained_intron MGP_C3HHeJ_T0084699.1 MGP_C3HHeJ_G0032237.1 mouse_genomes_project 7 101181939 101234069 - MGP_C3HHeJ_P0084699 Acer3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081182.1 MGP_C3HHeJ_G0031325.1 mouse_genomes_project 7 7531443 7532967 - MGP_C3HHeJ_P0081182 Vmn1r66 protein_coding protein_coding MGP_C3HHeJ_T0002156.1 MGP_C3HHeJ_G0002077.1 mouse_genomes_project 7 413154 414613 - TEC TEC MGP_C3HHeJ_T0081605.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17721009 17732108 + MGP_C3HHeJ_P0081605 Ercc1 protein_coding protein_coding MGP_C3HHeJ_T0081606.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17721325 17731343 + Ercc1 protein_coding retained_intron MGP_C3HHeJ_T0081607.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17721331 17726820 + Ercc1 protein_coding retained_intron MGP_C3HHeJ_T0081608.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17721373 17730713 + MGP_C3HHeJ_P0081608 Ercc1 protein_coding protein_coding MGP_C3HHeJ_T0081609.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17721384 17726467 + MGP_C3HHeJ_P0081609 Ercc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081610.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17724745 17728775 + MGP_C3HHeJ_P0081610 Ercc1 protein_coding protein_coding MGP_C3HHeJ_T0081611.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17725756 17730199 + Ercc1 protein_coding processed_transcript MGP_C3HHeJ_T0081612.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17728237 17731050 + Ercc1 protein_coding retained_intron MGP_C3HHeJ_T0081613.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17728702 17732106 + MGP_C3HHeJ_P0081613 Ercc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081614.1 MGP_C3HHeJ_G0031474.1 mouse_genomes_project 7 17730219 17732107 + Ercc1 protein_coding retained_intron MGP_C3HHeJ_T0102261.1 MGP_C3HHeJ_G0040224.1 mouse_genomes_project 7 50018525 50019417 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086036.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130329686 130336706 - MGP_C3HHeJ_P0086036 Spns1 protein_coding protein_coding MGP_C3HHeJ_T0086037.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130329695 130337040 - Spns1 protein_coding retained_intron MGP_C3HHeJ_T0086038.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130329695 130337040 - MGP_C3HHeJ_P0086038 Spns1 protein_coding protein_coding MGP_C3HHeJ_T0086039.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130329695 130337040 - MGP_C3HHeJ_P0086039 Spns1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086040.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130330363 130336658 - MGP_C3HHeJ_P0086040 Spns1 protein_coding protein_coding MGP_C3HHeJ_T0086041.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130330848 130332548 - Spns1 protein_coding retained_intron MGP_C3HHeJ_T0086042.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130331208 130336724 - MGP_C3HHeJ_P0086042 Spns1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086043.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130331492 130332191 - Spns1 protein_coding retained_intron MGP_C3HHeJ_T0086044.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130332373 130336836 - MGP_C3HHeJ_P0086044 Spns1 protein_coding protein_coding MGP_C3HHeJ_T0086045.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130333288 130333992 - Spns1 protein_coding retained_intron MGP_C3HHeJ_T0086046.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130333904 130336357 - Spns1 protein_coding processed_transcript MGP_C3HHeJ_T0086047.1 MGP_C3HHeJ_G0032674.1 mouse_genomes_project 7 130336326 130337050 - Spns1 protein_coding processed_transcript MGP_C3HHeJ_T0086864.1 MGP_C3HHeJ_G0032830.1 mouse_genomes_project 7 139862787 139866036 + MGP_C3HHeJ_P0086864 Foxi2 protein_coding protein_coding MGP_C3HHeJ_T0085054.1 MGP_C3HHeJ_G0032325.1 mouse_genomes_project 7 105930934 105940635 + MGP_C3HHeJ_P0085054 Olfr558 protein_coding protein_coding MGP_C3HHeJ_T0085457.1 MGP_C3HHeJ_G0032551.1 mouse_genomes_project 7 113520532 113523871 - MGP_C3HHeJ_P0085457 protein_coding protein_coding MGP_C3HHeJ_T0102270.1 MGP_C3HHeJ_G0040233.1 mouse_genomes_project 7 87666247 87666633 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084526.1 MGP_C3HHeJ_G0032195.1 mouse_genomes_project 7 92102745 92108491 + MGP_C3HHeJ_P0084526 Fzd4 protein_coding protein_coding MGP_C3HHeJ_T0084478.1 MGP_C3HHeJ_G0032170.1 mouse_genomes_project 7 88856012 88857094 - MGP_C3HHeJ_P0084478 Olfr310 protein_coding protein_coding MGP_C3HHeJ_T0080946.1 MGP_C3HHeJ_G0031246.1 mouse_genomes_project 7 1320623 1351862 - MGP_C3HHeJ_P0080946 Gp6 protein_coding protein_coding MGP_C3HHeJ_T0080947.1 MGP_C3HHeJ_G0031246.1 mouse_genomes_project 7 1328523 1351846 - MGP_C3HHeJ_P0080947 Gp6 protein_coding protein_coding MGP_C3HHeJ_T0005203.1 MGP_C3HHeJ_G0004410.1 mouse_genomes_project 7 119958607 119959489 + Gm44777 antisense antisense MGP_C3HHeJ_T0005204.1 MGP_C3HHeJ_G0004410.1 mouse_genomes_project 7 119958614 119963327 + Gm44777 antisense antisense MGP_C3HHeJ_T0005205.1 MGP_C3HHeJ_G0004410.1 mouse_genomes_project 7 119961017 119963647 + Gm44777 antisense antisense MGP_C3HHeJ_T0082229.1 MGP_C3HHeJ_G0031647.1 mouse_genomes_project 7 27527455 27530597 + MGP_C3HHeJ_P0082229 Rps16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082230.1 MGP_C3HHeJ_G0031647.1 mouse_genomes_project 7 27527646 27530601 + MGP_C3HHeJ_P0082230 Rps16 protein_coding protein_coding MGP_C3HHeJ_T0082231.1 MGP_C3HHeJ_G0031647.1 mouse_genomes_project 7 27527757 27530601 + Rps16 protein_coding retained_intron MGP_C3HHeJ_T0082232.1 MGP_C3HHeJ_G0031647.1 mouse_genomes_project 7 27527918 27530601 + Rps16 protein_coding processed_transcript MGP_C3HHeJ_T0015598.1 MGP_C3HHeJ_G0013702.1 mouse_genomes_project 7 44331786 44332024 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002199.1 MGP_C3HHeJ_G0002120.1 mouse_genomes_project 7 57594588 57595766 - TEC TEC MGP_C3HHeJ_T0080901.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 960999 1016379 - MGP_C3HHeJ_P0080901 Lair1 protein_coding protein_coding MGP_C3HHeJ_T0080902.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 965571 1016404 - MGP_C3HHeJ_P0080902 Lair1 protein_coding protein_coding MGP_C3HHeJ_T0080903.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 966557 1016374 - MGP_C3HHeJ_P0080903 Lair1 protein_coding protein_coding MGP_C3HHeJ_T0080904.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 967478 1016361 - MGP_C3HHeJ_P0080904 Lair1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080905.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 967505 1016339 - MGP_C3HHeJ_P0080905 Lair1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080906.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 967665 982887 - Lair1 protein_coding processed_transcript MGP_C3HHeJ_T0080907.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 968071 1016316 - MGP_C3HHeJ_P0080907 Lair1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080908.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 968161 1016341 - MGP_C3HHeJ_P0080908 Lair1 protein_coding protein_coding MGP_C3HHeJ_T0080909.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 968161 1016341 - MGP_C3HHeJ_P0080909 Lair1 protein_coding protein_coding MGP_C3HHeJ_T0080910.1 MGP_C3HHeJ_G0031239.1 mouse_genomes_project 7 983041 1016348 - Lair1 protein_coding processed_transcript MGP_C3HHeJ_T0085221.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839491 108866309 - MGP_C3HHeJ_P0085221 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085222.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839492 108865934 - MGP_C3HHeJ_P0085222 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085223.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839492 108851429 - MGP_C3HHeJ_P0085223 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085224.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839492 108851645 - MGP_C3HHeJ_P0085224 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085225.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839492 108850909 - MGP_C3HHeJ_P0085225 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085226.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839494 108865899 - MGP_C3HHeJ_P0085226 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085227.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839495 108851088 - Apbb1 protein_coding retained_intron MGP_C3HHeJ_T0085228.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839511 108866147 - MGP_C3HHeJ_P0085228 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085229.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839531 108851424 - MGP_C3HHeJ_P0085229 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085230.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108839826 108850909 - MGP_C3HHeJ_P0085230 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085231.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108840169 108847637 - Apbb1 protein_coding retained_intron MGP_C3HHeJ_T0085232.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108840476 108849426 - Apbb1 protein_coding retained_intron MGP_C3HHeJ_T0085233.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108847721 108865848 - MGP_C3HHeJ_P0085233 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085234.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108848238 108851095 - MGP_C3HHeJ_P0085234 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085235.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108848681 108851397 - MGP_C3HHeJ_P0085235 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085236.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108848796 108851405 - MGP_C3HHeJ_P0085236 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085237.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108849225 108851724 - MGP_C3HHeJ_P0085237 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0085238.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108849299 108850802 - Apbb1 protein_coding retained_intron MGP_C3HHeJ_T0085239.1 MGP_C3HHeJ_G0032450.1 mouse_genomes_project 7 108857662 108865844 - MGP_C3HHeJ_P0085239 Apbb1 protein_coding protein_coding MGP_C3HHeJ_T0015621.1 MGP_C3HHeJ_G0013725.1 mouse_genomes_project 7 58454169 58454589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084459.1 MGP_C3HHeJ_G0032160.1 mouse_genomes_project 7 86511610 86674321 - MGP_C3HHeJ_P0084459 Cemip protein_coding protein_coding MGP_C3HHeJ_T0084460.1 MGP_C3HHeJ_G0032160.1 mouse_genomes_project 7 86513542 86523092 - Cemip protein_coding retained_intron MGP_C3HHeJ_T0084461.1 MGP_C3HHeJ_G0032160.1 mouse_genomes_project 7 86525282 86674513 - Cemip protein_coding retained_intron MGP_C3HHeJ_T0084462.1 MGP_C3HHeJ_G0032160.1 mouse_genomes_project 7 86529218 86557786 - Cemip protein_coding retained_intron MGP_C3HHeJ_T0084463.1 MGP_C3HHeJ_G0032160.1 mouse_genomes_project 7 86539521 86674513 - Cemip protein_coding retained_intron MGP_C3HHeJ_T0015665.1 MGP_C3HHeJ_G0013769.1 mouse_genomes_project 7 96976061 96976331 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018114.1 MGP_C3HHeJ_G0015422.1 mouse_genomes_project 7 30042630 30066482 - Gm21982 processed_transcript retained_intron MGP_C3HHeJ_T0085099.1 MGP_C3HHeJ_G0032367.1 mouse_genomes_project 7 106877043 106878210 - MGP_C3HHeJ_P0085099 Olfr624 protein_coding protein_coding MGP_C3HHeJ_T0008876.1 MGP_C3HHeJ_G0007149.1 mouse_genomes_project 7 86742466 86784866 + Gm26708 lincRNA lincRNA MGP_C3HHeJ_T0102246.1 MGP_C3HHeJ_G0040209.1 mouse_genomes_project 7 48903452 49422394 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085730.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122543380 122557035 - MGP_C3HHeJ_P0085730 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085731.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122543380 122557035 - MGP_C3HHeJ_P0085731 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085732.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122543395 122557038 - MGP_C3HHeJ_P0085732 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085733.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122544941 122556721 - MGP_C3HHeJ_P0085733 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085734.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122546640 122556639 - MGP_C3HHeJ_P0085734 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085735.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122546899 122557291 - MGP_C3HHeJ_P0085735 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085736.1 MGP_C3HHeJ_G0032603.1 mouse_genomes_project 7 122553823 122555346 - MGP_C3HHeJ_P0085736 Knop1 protein_coding protein_coding MGP_C3HHeJ_T0085059.1 MGP_C3HHeJ_G0032329.1 mouse_genomes_project 7 106076299 106080206 - MGP_C3HHeJ_P0085059 Olfr566 protein_coding protein_coding MGP_C3HHeJ_T0097925.1 MGP_C3HHeJ_G0036137.1 mouse_genomes_project 7 111521673 111522617 - pseudogene pseudogene MGP_C3HHeJ_T0082563.1 MGP_C3HHeJ_G0031727.1 mouse_genomes_project 7 29914358 29927164 - MGP_C3HHeJ_P0082563 Arhgap33 protein_coding unknown_likely_coding MGP_C3HHeJ_T0102266.1 MGP_C3HHeJ_G0040229.1 mouse_genomes_project 7 87465404 87468349 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086114.1 MGP_C3HHeJ_G0032687.1 mouse_genomes_project 7 130605193 130607621 - MGP_C3HHeJ_P0086114 Nupr1 protein_coding protein_coding MGP_C3HHeJ_T0086115.1 MGP_C3HHeJ_G0032687.1 mouse_genomes_project 7 130605196 130608955 - Nupr1 protein_coding retained_intron MGP_C3HHeJ_T0086116.1 MGP_C3HHeJ_G0032687.1 mouse_genomes_project 7 130605222 130607289 - MGP_C3HHeJ_P0086116 Nupr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086117.1 MGP_C3HHeJ_G0032687.1 mouse_genomes_project 7 130605386 130607420 - MGP_C3HHeJ_P0086117 Nupr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086118.1 MGP_C3HHeJ_G0032687.1 mouse_genomes_project 7 130606892 130607961 - Nupr1 protein_coding processed_transcript MGP_C3HHeJ_T0086119.1 MGP_C3HHeJ_G0032687.1 mouse_genomes_project 7 130606892 130612732 - Nupr1 protein_coding processed_transcript MGP_C3HHeJ_T0087527.1 MGP_C3HHeJ_G0032993.1 mouse_genomes_project 7 150162217 150192316 - MGP_C3HHeJ_P0087527 Tpcn2 protein_coding protein_coding MGP_C3HHeJ_T0087023.1 MGP_C3HHeJ_G0032889.1 mouse_genomes_project 7 145463516 145466386 + MGP_C3HHeJ_P0087023 Urah protein_coding protein_coding MGP_C3HHeJ_T0087024.1 MGP_C3HHeJ_G0032889.1 mouse_genomes_project 7 145463777 145466465 + MGP_C3HHeJ_P0087024 Urah protein_coding protein_coding MGP_C3HHeJ_T0087025.1 MGP_C3HHeJ_G0032889.1 mouse_genomes_project 7 145463795 145466470 + MGP_C3HHeJ_P0087025 Urah protein_coding protein_coding MGP_C3HHeJ_T0087026.1 MGP_C3HHeJ_G0032889.1 mouse_genomes_project 7 145463832 145465567 + Urah protein_coding retained_intron MGP_C3HHeJ_T0100821.1 MGP_C3HHeJ_G0039015.1 mouse_genomes_project 7 46225211 46225281 - Snord34 snoRNA snoRNA MGP_C3HHeJ_T0002248.1 MGP_C3HHeJ_G0002168.1 mouse_genomes_project 7 95398244 95398563 + TEC TEC MGP_C3HHeJ_T0011609.1 MGP_C3HHeJ_G0009742.1 mouse_genomes_project 7 148091275 148091499 + Gm27539 misc_RNA misc_RNA MGP_C3HHeJ_T0082644.1 MGP_C3HHeJ_G0031743.1 mouse_genomes_project 7 30108239 30118425 + Atp4a protein_coding retained_intron MGP_C3HHeJ_T0082645.1 MGP_C3HHeJ_G0031743.1 mouse_genomes_project 7 30108239 30123069 + MGP_C3HHeJ_P0082645 Atp4a protein_coding protein_coding MGP_C3HHeJ_T0082646.1 MGP_C3HHeJ_G0031743.1 mouse_genomes_project 7 30108262 30123068 + MGP_C3HHeJ_P0082646 Atp4a protein_coding protein_coding MGP_C3HHeJ_T0082647.1 MGP_C3HHeJ_G0031743.1 mouse_genomes_project 7 30113851 30118174 + MGP_C3HHeJ_P0082647 Atp4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082648.1 MGP_C3HHeJ_G0031743.1 mouse_genomes_project 7 30119941 30122725 + Atp4a protein_coding retained_intron MGP_C3HHeJ_T0005074.1 MGP_C3HHeJ_G0004319.1 mouse_genomes_project 7 1597184 1600753 + Gm44877 antisense antisense MGP_C3HHeJ_T0010772.1 MGP_C3HHeJ_G0008905.1 mouse_genomes_project 7 35226613 35226683 + Gm25033 miRNA miRNA MGP_C3HHeJ_T0102161.1 MGP_C3HHeJ_G0040125.1 mouse_genomes_project 7 9506745 9506944 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008727.1 MGP_C3HHeJ_G0007041.1 mouse_genomes_project 7 17757826 17769997 - Gm26852 lincRNA lincRNA MGP_C3HHeJ_T0008766.1 MGP_C3HHeJ_G0007077.1 mouse_genomes_project 7 40009851 40018775 + Gm37494 lincRNA lincRNA MGP_C3HHeJ_T0008767.1 MGP_C3HHeJ_G0007077.1 mouse_genomes_project 7 40017942 40019173 + Gm37494 lincRNA lincRNA MGP_C3HHeJ_T0008768.1 MGP_C3HHeJ_G0007077.1 mouse_genomes_project 7 40017943 40046908 + Gm37494 lincRNA lincRNA MGP_C3HHeJ_T0008769.1 MGP_C3HHeJ_G0007077.1 mouse_genomes_project 7 40017967 40030601 + Gm37494 lincRNA lincRNA MGP_C3HHeJ_T0086376.1 MGP_C3HHeJ_G0032736.1 mouse_genomes_project 7 131491256 131499150 - MGP_C3HHeJ_P0086376 Zfp689 protein_coding protein_coding MGP_C3HHeJ_T0086377.1 MGP_C3HHeJ_G0032736.1 mouse_genomes_project 7 131492869 131498985 - MGP_C3HHeJ_P0086377 Zfp689 protein_coding protein_coding MGP_C3HHeJ_T0082372.1 MGP_C3HHeJ_G0031678.1 mouse_genomes_project 7 28441763 28445477 + MGP_C3HHeJ_P0082372 Ggn protein_coding protein_coding MGP_C3HHeJ_T0082373.1 MGP_C3HHeJ_G0031678.1 mouse_genomes_project 7 28441933 28445456 + MGP_C3HHeJ_P0082373 Ggn protein_coding protein_coding MGP_C3HHeJ_T0082544.1 MGP_C3HHeJ_G0031723.1 mouse_genomes_project 7 29815484 29826500 - MGP_C3HHeJ_P0082544 Aplp1 protein_coding protein_coding MGP_C3HHeJ_T0084087.1 MGP_C3HHeJ_G0032084.1 mouse_genomes_project 7 81170010 81181492 - MGP_C3HHeJ_P0084087 protein_coding protein_coding MGP_C3HHeJ_T0084088.1 MGP_C3HHeJ_G0032084.1 mouse_genomes_project 7 81176193 81194500 - MGP_C3HHeJ_P0084088 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084089.1 MGP_C3HHeJ_G0032084.1 mouse_genomes_project 7 81176196 81190542 - MGP_C3HHeJ_P0084089 protein_coding protein_coding MGP_C3HHeJ_T0085461.1 MGP_C3HHeJ_G0032554.1 mouse_genomes_project 7 113683440 113746949 + MGP_C3HHeJ_P0085461 Swap70 protein_coding protein_coding MGP_C3HHeJ_T0082874.1 MGP_C3HHeJ_G0031787.1 mouse_genomes_project 7 35338452 35353180 + MGP_C3HHeJ_P0082874 Slc7a10 protein_coding protein_coding MGP_C3HHeJ_T0082875.1 MGP_C3HHeJ_G0031787.1 mouse_genomes_project 7 35338452 35347517 + MGP_C3HHeJ_P0082875 Slc7a10 protein_coding protein_coding MGP_C3HHeJ_T0082876.1 MGP_C3HHeJ_G0031787.1 mouse_genomes_project 7 35338488 35352980 + MGP_C3HHeJ_P0082876 Slc7a10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082877.1 MGP_C3HHeJ_G0031787.1 mouse_genomes_project 7 35338549 35350017 + MGP_C3HHeJ_P0082877 Slc7a10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082878.1 MGP_C3HHeJ_G0031787.1 mouse_genomes_project 7 35350980 35352961 + MGP_C3HHeJ_P0082878 Slc7a10 protein_coding protein_coding MGP_C3HHeJ_T0081172.1 MGP_C3HHeJ_G0031318.1 mouse_genomes_project 7 3806943 4043697 + MGP_C3HHeJ_P0081172 Usp29 protein_coding protein_coding MGP_C3HHeJ_T0081173.1 MGP_C3HHeJ_G0031318.1 mouse_genomes_project 7 3807101 4038217 + MGP_C3HHeJ_P0081173 Usp29 protein_coding protein_coding MGP_C3HHeJ_T0081174.1 MGP_C3HHeJ_G0031318.1 mouse_genomes_project 7 4025823 4041288 + MGP_C3HHeJ_P0081174 Usp29 protein_coding protein_coding MGP_C3HHeJ_T0081175.1 MGP_C3HHeJ_G0031318.1 mouse_genomes_project 7 4037622 4040232 + MGP_C3HHeJ_P0081175 Usp29 protein_coding protein_coding MGP_C3HHeJ_T0002167.1 MGP_C3HHeJ_G0002088.1 mouse_genomes_project 7 34500816 34504697 + TEC TEC MGP_C3HHeJ_T0085060.1 MGP_C3HHeJ_G0032330.1 mouse_genomes_project 7 106097955 106098906 + MGP_C3HHeJ_P0085060 Olfr568 protein_coding protein_coding MGP_C3HHeJ_T0082550.1 MGP_C3HHeJ_G0031725.1 mouse_genomes_project 7 29838929 29841624 + MGP_C3HHeJ_P0082550 Nphs1 protein_coding protein_coding MGP_C3HHeJ_T0082551.1 MGP_C3HHeJ_G0031725.1 mouse_genomes_project 7 29840339 29875665 + MGP_C3HHeJ_P0082551 Nphs1 protein_coding protein_coding MGP_C3HHeJ_T0082552.1 MGP_C3HHeJ_G0031725.1 mouse_genomes_project 7 29855108 29871206 + Nphs1 protein_coding retained_intron MGP_C3HHeJ_T0082553.1 MGP_C3HHeJ_G0031725.1 mouse_genomes_project 7 29864703 29875323 + MGP_C3HHeJ_P0082553 Nphs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082554.1 MGP_C3HHeJ_G0031725.1 mouse_genomes_project 7 29874696 29875430 + Nphs1 protein_coding retained_intron MGP_C3HHeJ_T0084030.1 MGP_C3HHeJ_G0032074.1 mouse_genomes_project 7 75931249 75968278 + MGP_C3HHeJ_P0084030 Fam174b protein_coding protein_coding MGP_C3HHeJ_T0084031.1 MGP_C3HHeJ_G0032074.1 mouse_genomes_project 7 75957835 75966516 + MGP_C3HHeJ_P0084031 Fam174b protein_coding protein_coding MGP_C3HHeJ_T0084032.1 MGP_C3HHeJ_G0032074.1 mouse_genomes_project 7 75957899 75967377 + Fam174b protein_coding retained_intron MGP_C3HHeJ_T0005165.1 MGP_C3HHeJ_G0004384.1 mouse_genomes_project 7 82473746 82486671 - Gm21057 antisense antisense MGP_C3HHeJ_T0005166.1 MGP_C3HHeJ_G0004384.1 mouse_genomes_project 7 82485190 82486691 - Gm21057 antisense antisense MGP_C3HHeJ_T0005194.1 MGP_C3HHeJ_G0004403.1 mouse_genomes_project 7 107569218 107578545 + Gm15133 antisense antisense MGP_C3HHeJ_T0005195.1 MGP_C3HHeJ_G0004403.1 mouse_genomes_project 7 107569219 107578716 + Gm15133 antisense antisense MGP_C3HHeJ_T0084490.1 MGP_C3HHeJ_G0032181.1 mouse_genomes_project 7 89216048 89218422 + MGP_C3HHeJ_P0084490 Olfr295 protein_coding protein_coding MGP_C3HHeJ_T0084491.1 MGP_C3HHeJ_G0032181.1 mouse_genomes_project 7 89216072 89218422 + MGP_C3HHeJ_P0084491 Olfr295 protein_coding protein_coding MGP_C3HHeJ_T0086258.1 MGP_C3HHeJ_G0032706.1 mouse_genomes_project 7 130930173 130946874 + MGP_C3HHeJ_P0086258 Kctd13 protein_coding protein_coding MGP_C3HHeJ_T0086259.1 MGP_C3HHeJ_G0032706.1 mouse_genomes_project 7 130931215 130942643 + Kctd13 protein_coding retained_intron MGP_C3HHeJ_T0086260.1 MGP_C3HHeJ_G0032706.1 mouse_genomes_project 7 130943290 130946210 + Kctd13 protein_coding retained_intron MGP_C3HHeJ_T0087027.1 MGP_C3HHeJ_G0032890.1 mouse_genomes_project 7 145474437 145475660 + MGP_C3HHeJ_P0087027 Scgb1c1 protein_coding protein_coding MGP_C3HHeJ_T0085196.1 MGP_C3HHeJ_G0032433.1 mouse_genomes_project 7 108328145 108329084 + MGP_C3HHeJ_P0085196 Olfr677 protein_coding protein_coding MGP_C3HHeJ_T0081598.1 MGP_C3HHeJ_G0031471.1 mouse_genomes_project 7 17646854 17650421 - MGP_C3HHeJ_P0081598 Ppm1n protein_coding protein_coding MGP_C3HHeJ_T0081599.1 MGP_C3HHeJ_G0031471.1 mouse_genomes_project 7 17646891 17648754 - Ppm1n protein_coding retained_intron MGP_C3HHeJ_T0081600.1 MGP_C3HHeJ_G0031471.1 mouse_genomes_project 7 17648173 17648508 - Ppm1n protein_coding retained_intron MGP_C3HHeJ_T0081601.1 MGP_C3HHeJ_G0031471.1 mouse_genomes_project 7 17649173 17649958 - Ppm1n protein_coding retained_intron MGP_C3HHeJ_T0085396.1 MGP_C3HHeJ_G0032535.1 mouse_genomes_project 7 112420772 112446265 + MGP_C3HHeJ_P0085396 Tub protein_coding protein_coding MGP_C3HHeJ_T0085397.1 MGP_C3HHeJ_G0032535.1 mouse_genomes_project 7 112437613 112440131 + Tub protein_coding retained_intron MGP_C3HHeJ_T0084964.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077094 105085326 - MGP_C3HHeJ_P0084964 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084965.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077099 105084888 - MGP_C3HHeJ_P0084965 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084966.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077099 105085339 - MGP_C3HHeJ_P0084966 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084967.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077100 105098262 - MGP_C3HHeJ_P0084967 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084968.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077100 105098324 - MGP_C3HHeJ_P0084968 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084969.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077104 105085297 - MGP_C3HHeJ_P0084969 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084970.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077111 105098351 - Lrrc51 protein_coding processed_transcript MGP_C3HHeJ_T0084971.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077181 105098291 - MGP_C3HHeJ_P0084971 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084972.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077268 105098258 - MGP_C3HHeJ_P0084972 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0084973.1 MGP_C3HHeJ_G0032295.1 mouse_genomes_project 7 105077284 105098286 - MGP_C3HHeJ_P0084973 Lrrc51 protein_coding protein_coding MGP_C3HHeJ_T0097919.1 MGP_C3HHeJ_G0036131.1 mouse_genomes_project 7 15805708 15806171 + pseudogene pseudogene MGP_C3HHeJ_T0015497.1 MGP_C3HHeJ_G0013601.1 mouse_genomes_project 7 2445459 2445749 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087099.1 MGP_C3HHeJ_G0032910.1 mouse_genomes_project 7 145822278 145830887 - MGP_C3HHeJ_P0087099 Rnh1 protein_coding protein_coding MGP_C3HHeJ_T0087100.1 MGP_C3HHeJ_G0032910.1 mouse_genomes_project 7 145822278 145835718 - MGP_C3HHeJ_P0087100 Rnh1 protein_coding protein_coding MGP_C3HHeJ_T0082635.1 MGP_C3HHeJ_G0031740.1 mouse_genomes_project 7 30055096 30066478 - MGP_C3HHeJ_P0082635 Haus5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082636.1 MGP_C3HHeJ_G0031740.1 mouse_genomes_project 7 30055101 30066539 - MGP_C3HHeJ_P0082636 Haus5 protein_coding protein_coding MGP_C3HHeJ_T0082637.1 MGP_C3HHeJ_G0031740.1 mouse_genomes_project 7 30055323 30058389 - Haus5 protein_coding retained_intron MGP_C3HHeJ_T0082638.1 MGP_C3HHeJ_G0031740.1 mouse_genomes_project 7 30058945 30060348 - Haus5 protein_coding retained_intron MGP_C3HHeJ_T0082639.1 MGP_C3HHeJ_G0031740.1 mouse_genomes_project 7 30059473 30066505 - Haus5 protein_coding retained_intron MGP_C3HHeJ_T0082640.1 MGP_C3HHeJ_G0031740.1 mouse_genomes_project 7 30060232 30062241 - Haus5 protein_coding retained_intron MGP_C3HHeJ_T0002282.1 MGP_C3HHeJ_G0002202.1 mouse_genomes_project 7 147922891 147922950 + TEC TEC MGP_C3HHeJ_T0102197.1 MGP_C3HHeJ_G0040161.1 mouse_genomes_project 7 15828470 15834940 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081317.1 MGP_C3HHeJ_G0031380.1 mouse_genomes_project 7 11848654 11894427 - MGP_C3HHeJ_P0081317 protein_coding protein_coding MGP_C3HHeJ_T0015607.1 MGP_C3HHeJ_G0013711.1 mouse_genomes_project 7 49501376 49501650 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085744.1 MGP_C3HHeJ_G0032607.1 mouse_genomes_project 7 123159429 123175911 - MGP_C3HHeJ_P0085744 Gp2 protein_coding protein_coding MGP_C3HHeJ_T0084630.1 MGP_C3HHeJ_G0032224.1 mouse_genomes_project 7 100301249 100305989 - MGP_C3HHeJ_P0084630 Thrsp protein_coding protein_coding MGP_C3HHeJ_T0084631.1 MGP_C3HHeJ_G0032224.1 mouse_genomes_project 7 100304403 100305778 - Thrsp protein_coding retained_intron MGP_C3HHeJ_T0083933.1 MGP_C3HHeJ_G0032056.1 mouse_genomes_project 7 68318976 68356513 - MGP_C3HHeJ_P0083933 Aldh1a3 protein_coding protein_coding MGP_C3HHeJ_T0083934.1 MGP_C3HHeJ_G0032056.1 mouse_genomes_project 7 68327979 68334087 - Aldh1a3 protein_coding retained_intron MGP_C3HHeJ_T0083935.1 MGP_C3HHeJ_G0032056.1 mouse_genomes_project 7 68330133 68348212 - MGP_C3HHeJ_P0083935 Aldh1a3 protein_coding protein_coding MGP_C3HHeJ_T0083936.1 MGP_C3HHeJ_G0032056.1 mouse_genomes_project 7 68336595 68355585 - Aldh1a3 protein_coding processed_transcript MGP_C3HHeJ_T0083937.1 MGP_C3HHeJ_G0032056.1 mouse_genomes_project 7 68337041 68354697 - Aldh1a3 protein_coding processed_transcript MGP_C3HHeJ_T0081347.1 MGP_C3HHeJ_G0031394.1 mouse_genomes_project 7 13843329 13848364 - MGP_C3HHeJ_P0081347 protein_coding protein_coding MGP_C3HHeJ_T0010841.1 MGP_C3HHeJ_G0008974.1 mouse_genomes_project 7 144546637 144546694 - Mir7686 miRNA miRNA MGP_C3HHeJ_T0084779.1 MGP_C3HHeJ_G0032260.1 mouse_genomes_project 7 102939299 103009486 - MGP_C3HHeJ_P0084779 Rnf169 protein_coding protein_coding MGP_C3HHeJ_T0084780.1 MGP_C3HHeJ_G0032260.1 mouse_genomes_project 7 102955017 102989899 - Rnf169 protein_coding processed_transcript MGP_C3HHeJ_T0081994.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24602249 24610232 - MGP_C3HHeJ_P0081994 Ccdc97 protein_coding protein_coding MGP_C3HHeJ_T0081995.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24604078 24607250 - Ccdc97 protein_coding processed_transcript MGP_C3HHeJ_T0081996.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24605277 24610147 - Ccdc97 protein_coding retained_intron MGP_C3HHeJ_T0081997.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24605965 24610189 - MGP_C3HHeJ_P0081997 Ccdc97 protein_coding protein_coding MGP_C3HHeJ_T0081998.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24606053 24607538 - Ccdc97 protein_coding retained_intron MGP_C3HHeJ_T0081999.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24607047 24610150 - Ccdc97 protein_coding processed_transcript MGP_C3HHeJ_T0082000.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24607047 24610135 - Ccdc97 protein_coding processed_transcript MGP_C3HHeJ_T0082001.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24607284 24610199 - Ccdc97 protein_coding processed_transcript MGP_C3HHeJ_T0082002.1 MGP_C3HHeJ_G0031582.1 mouse_genomes_project 7 24608049 24610211 - Ccdc97 protein_coding processed_transcript MGP_C3HHeJ_T0099616.1 MGP_C3HHeJ_G0037810.1 mouse_genomes_project 7 132870614 132870716 + Gm23783 snRNA snRNA MGP_C3HHeJ_T0005247.1 MGP_C3HHeJ_G0004442.1 mouse_genomes_project 7 149236213 149274752 - Gm14372 antisense antisense MGP_C3HHeJ_T0081469.1 MGP_C3HHeJ_G0031426.1 mouse_genomes_project 7 14970965 14975929 + MGP_C3HHeJ_P0081469 Pnmal1 protein_coding protein_coding MGP_C3HHeJ_T0101484.1 MGP_C3HHeJ_G0039482.1 mouse_genomes_project 7 107629233 107631688 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101485.1 MGP_C3HHeJ_G0039482.1 mouse_genomes_project 7 107629926 107631167 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0015675.1 MGP_C3HHeJ_G0013779.1 mouse_genomes_project 7 100840956 100841340 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002178.1 MGP_C3HHeJ_G0002099.1 mouse_genomes_project 7 37927346 37930603 - TEC TEC MGP_C3HHeJ_T0086089.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130544148 130558995 - MGP_C3HHeJ_P0086089 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086090.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130544341 130556425 - MGP_C3HHeJ_P0086090 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086091.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130544341 130557458 - MGP_C3HHeJ_P0086091 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086092.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130545027 130556368 - MGP_C3HHeJ_P0086092 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086093.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130545031 130548289 - Cln3 protein_coding processed_transcript MGP_C3HHeJ_T0086094.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130545049 130545670 - Cln3 protein_coding processed_transcript MGP_C3HHeJ_T0086095.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130545063 130551053 - Cln3 protein_coding retained_intron MGP_C3HHeJ_T0086096.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130551548 130557485 - Cln3 protein_coding retained_intron MGP_C3HHeJ_T0086097.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130552400 130556404 - Cln3 protein_coding processed_transcript MGP_C3HHeJ_T0086098.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130552436 130556540 - MGP_C3HHeJ_P0086098 Cln3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086099.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130552452 130557398 - MGP_C3HHeJ_P0086099 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086100.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130552598 130556701 - MGP_C3HHeJ_P0086100 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086101.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130553447 130556292 - Cln3 protein_coding retained_intron MGP_C3HHeJ_T0086102.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130554008 130556494 - Cln3 protein_coding retained_intron MGP_C3HHeJ_T0086103.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130554690 130556520 - Cln3 protein_coding processed_transcript MGP_C3HHeJ_T0086104.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130554835 130556744 - MGP_C3HHeJ_P0086104 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086105.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130554838 130557756 - MGP_C3HHeJ_P0086105 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086106.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130554892 130556732 - MGP_C3HHeJ_P0086106 Cln3 protein_coding protein_coding MGP_C3HHeJ_T0086107.1 MGP_C3HHeJ_G0032684.1 mouse_genomes_project 7 130556499 130557964 - Cln3 protein_coding processed_transcript MGP_C3HHeJ_T0085043.1 MGP_C3HHeJ_G0032315.1 mouse_genomes_project 7 105777315 105784848 - MGP_C3HHeJ_P0085043 Trim21 protein_coding protein_coding MGP_C3HHeJ_T0085044.1 MGP_C3HHeJ_G0032315.1 mouse_genomes_project 7 105777315 105784848 - MGP_C3HHeJ_P0085044 Trim21 protein_coding protein_coding MGP_C3HHeJ_T0081181.1 MGP_C3HHeJ_G0031324.1 mouse_genomes_project 7 7408511 7429596 - MGP_C3HHeJ_P0081181 protein_coding protein_coding MGP_C3HHeJ_T0085315.1 MGP_C3HHeJ_G0032464.1 mouse_genomes_project 7 110004710 110005662 - MGP_C3HHeJ_P0085315 Olfr693 protein_coding protein_coding MGP_C3HHeJ_T0086910.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143735950 143775491 + MGP_C3HHeJ_P0086910 Lrrc27 protein_coding protein_coding MGP_C3HHeJ_T0086911.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143735973 143748726 + MGP_C3HHeJ_P0086911 Lrrc27 protein_coding protein_coding MGP_C3HHeJ_T0086912.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143736234 143760605 + MGP_C3HHeJ_P0086912 Lrrc27 protein_coding protein_coding MGP_C3HHeJ_T0086913.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143745141 143751777 + MGP_C3HHeJ_P0086913 Lrrc27 protein_coding protein_coding MGP_C3HHeJ_T0086914.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143751034 143757744 + Lrrc27 protein_coding processed_transcript MGP_C3HHeJ_T0086915.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143751292 143757837 + Lrrc27 protein_coding retained_intron MGP_C3HHeJ_T0086916.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143765481 143775483 + Lrrc27 protein_coding processed_transcript MGP_C3HHeJ_T0086917.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143768459 143775484 + Lrrc27 protein_coding processed_transcript MGP_C3HHeJ_T0086918.1 MGP_C3HHeJ_G0032845.1 mouse_genomes_project 7 143771014 143775488 + Lrrc27 protein_coding processed_transcript MGP_C3HHeJ_T0086334.1 MGP_C3HHeJ_G0032723.1 mouse_genomes_project 7 131225998 131231497 + MGP_C3HHeJ_P0086334 Mylpf protein_coding protein_coding MGP_C3HHeJ_T0086335.1 MGP_C3HHeJ_G0032723.1 mouse_genomes_project 7 131229735 131232262 + MGP_C3HHeJ_P0086335 Mylpf protein_coding protein_coding MGP_C3HHeJ_T0086336.1 MGP_C3HHeJ_G0032723.1 mouse_genomes_project 7 131230653 131231462 + MGP_C3HHeJ_P0086336 Mylpf protein_coding protein_coding MGP_C3HHeJ_T0086337.1 MGP_C3HHeJ_G0032723.1 mouse_genomes_project 7 131231088 131231430 + Mylpf protein_coding retained_intron MGP_C3HHeJ_T0086338.1 MGP_C3HHeJ_G0032723.1 mouse_genomes_project 7 131231870 131232262 + Mylpf protein_coding retained_intron MGP_C3HHeJ_T0102264.1 MGP_C3HHeJ_G0040227.1 mouse_genomes_project 7 87389266 87391396 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008755.1 MGP_C3HHeJ_G0007066.1 mouse_genomes_project 7 35963437 35970568 + Gm26790 lincRNA lincRNA MGP_C3HHeJ_T0080948.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1382751 1406105 - MGP_C3HHeJ_P0080948 Rdh13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080949.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1383647 1406073 - MGP_C3HHeJ_P0080949 Rdh13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0080950.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1383648 1406153 - MGP_C3HHeJ_P0080950 Rdh13 protein_coding protein_coding MGP_C3HHeJ_T0080951.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1392696 1405685 - MGP_C3HHeJ_P0080951 Rdh13 protein_coding protein_coding MGP_C3HHeJ_T0080952.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1399741 1406097 - Rdh13 protein_coding retained_intron MGP_C3HHeJ_T0080953.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1401985 1406146 - Rdh13 protein_coding processed_transcript MGP_C3HHeJ_T0080954.1 MGP_C3HHeJ_G0031247.1 mouse_genomes_project 7 1403534 1406130 - Rdh13 protein_coding processed_transcript MGP_C3HHeJ_T0005190.1 MGP_C3HHeJ_G0004401.1 mouse_genomes_project 7 102656771 102662336 + Gm15635 antisense antisense MGP_C3HHeJ_T0005191.1 MGP_C3HHeJ_G0004401.1 mouse_genomes_project 7 102660421 102662247 + Gm15635 antisense antisense MGP_C3HHeJ_T0005192.1 MGP_C3HHeJ_G0004401.1 mouse_genomes_project 7 102660473 102662709 + Gm15635 antisense antisense MGP_C3HHeJ_T0005227.1 MGP_C3HHeJ_G0004427.1 mouse_genomes_project 7 132320833 132326043 - Gm44850 antisense antisense MGP_C3HHeJ_T0087299.1 MGP_C3HHeJ_G0032949.1 mouse_genomes_project 7 147001662 147002579 - MGP_C3HHeJ_P0087299 protein_coding protein_coding MGP_C3HHeJ_T0010801.1 MGP_C3HHeJ_G0008934.1 mouse_genomes_project 7 63690459 63690539 - Mir344-2 miRNA miRNA MGP_C3HHeJ_T0083638.1 MGP_C3HHeJ_G0031981.1 mouse_genomes_project 7 48139212 48175165 - MGP_C3HHeJ_P0083638 Uevld protein_coding protein_coding MGP_C3HHeJ_T0083383.1 MGP_C3HHeJ_G0031920.1 mouse_genomes_project 7 46404203 46438903 - MGP_C3HHeJ_P0083383 Trpm4 protein_coding protein_coding MGP_C3HHeJ_T0086527.1 MGP_C3HHeJ_G0032763.1 mouse_genomes_project 7 132006935 132011323 - MGP_C3HHeJ_P0086527 Prss8 protein_coding protein_coding MGP_C3HHeJ_T0086528.1 MGP_C3HHeJ_G0032763.1 mouse_genomes_project 7 132006935 132011323 - MGP_C3HHeJ_P0086528 Prss8 protein_coding protein_coding MGP_C3HHeJ_T0086529.1 MGP_C3HHeJ_G0032763.1 mouse_genomes_project 7 132007981 132011314 - MGP_C3HHeJ_P0086529 Prss8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085913.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126147728 126497191 + MGP_C3HHeJ_P0085913 Prkcb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085914.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126148274 126491481 + MGP_C3HHeJ_P0085914 Prkcb protein_coding protein_coding MGP_C3HHeJ_T0085915.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126148286 126497194 + MGP_C3HHeJ_P0085915 Prkcb protein_coding protein_coding MGP_C3HHeJ_T0085916.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126149005 126288617 + Prkcb protein_coding processed_transcript MGP_C3HHeJ_T0085917.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126279685 126321429 + Prkcb protein_coding processed_transcript MGP_C3HHeJ_T0085918.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126451444 126454236 + Prkcb protein_coding retained_intron MGP_C3HHeJ_T0085919.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126457499 126490904 + Prkcb protein_coding processed_transcript MGP_C3HHeJ_T0085920.1 MGP_C3HHeJ_G0032654.1 mouse_genomes_project 7 126496247 126497194 + Prkcb protein_coding retained_intron MGP_C3HHeJ_T0087018.1 MGP_C3HHeJ_G0032886.1 mouse_genomes_project 7 145387483 145398720 + MGP_C3HHeJ_P0087018 Cyp2e1 protein_coding protein_coding MGP_C3HHeJ_T0008726.1 MGP_C3HHeJ_G0007040.1 mouse_genomes_project 7 17672032 17674397 - Gm26802 lincRNA lincRNA MGP_C3HHeJ_T0008918.1 MGP_C3HHeJ_G0007176.1 mouse_genomes_project 7 120173718 120177607 + 4732496C06Rik lincRNA lincRNA MGP_C3HHeJ_T0005163.1 MGP_C3HHeJ_G0004383.1 mouse_genomes_project 7 82315413 82319118 + Gm26646 antisense antisense MGP_C3HHeJ_T0005164.1 MGP_C3HHeJ_G0004383.1 mouse_genomes_project 7 82317445 82319118 + Gm26646 antisense antisense MGP_C3HHeJ_T0081777.1 MGP_C3HHeJ_G0031529.1 mouse_genomes_project 7 23033206 23034061 - MGP_C3HHeJ_P0081777 Tescl protein_coding protein_coding MGP_C3HHeJ_T0084608.1 MGP_C3HHeJ_G0032218.1 mouse_genomes_project 7 99844113 99959630 + MGP_C3HHeJ_P0084608 Nars2 protein_coding protein_coding MGP_C3HHeJ_T0084609.1 MGP_C3HHeJ_G0032218.1 mouse_genomes_project 7 99844129 99895580 + Nars2 protein_coding processed_transcript MGP_C3HHeJ_T0084610.1 MGP_C3HHeJ_G0032218.1 mouse_genomes_project 7 99844170 99935278 + MGP_C3HHeJ_P0084610 Nars2 protein_coding protein_coding MGP_C3HHeJ_T0084611.1 MGP_C3HHeJ_G0032218.1 mouse_genomes_project 7 99917864 99957813 + MGP_C3HHeJ_P0084611 Nars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084612.1 MGP_C3HHeJ_G0032218.1 mouse_genomes_project 7 99934639 99957843 + MGP_C3HHeJ_P0084612 Nars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018155.1 MGP_C3HHeJ_G0015436.1 mouse_genomes_project 7 72441993 72487853 + processed_transcript antisense MGP_C3HHeJ_T0018156.1 MGP_C3HHeJ_G0015436.1 mouse_genomes_project 7 72463389 72487857 + processed_transcript retained_intron MGP_C3HHeJ_T0018157.1 MGP_C3HHeJ_G0015436.1 mouse_genomes_project 7 72463389 72479315 + processed_transcript antisense MGP_C3HHeJ_T0018158.1 MGP_C3HHeJ_G0015436.1 mouse_genomes_project 7 72465200 72465738 + processed_transcript processed_transcript MGP_C3HHeJ_T0008863.1 MGP_C3HHeJ_G0007145.1 mouse_genomes_project 7 82577504 82579107 + Gm45202 lincRNA lincRNA MGP_C3HHeJ_T0083476.1 MGP_C3HHeJ_G0031942.1 mouse_genomes_project 7 46776832 46782639 + Mamstr protein_coding retained_intron MGP_C3HHeJ_T0083477.1 MGP_C3HHeJ_G0031942.1 mouse_genomes_project 7 46776832 46777855 + Mamstr protein_coding retained_intron MGP_C3HHeJ_T0083478.1 MGP_C3HHeJ_G0031942.1 mouse_genomes_project 7 46776848 46782081 + MGP_C3HHeJ_P0083478 Mamstr protein_coding protein_coding MGP_C3HHeJ_T0083479.1 MGP_C3HHeJ_G0031942.1 mouse_genomes_project 7 46778344 46783391 + Mamstr protein_coding retained_intron MGP_C3HHeJ_T0083480.1 MGP_C3HHeJ_G0031942.1 mouse_genomes_project 7 46778640 46782611 + Mamstr protein_coding retained_intron MGP_C3HHeJ_T0083481.1 MGP_C3HHeJ_G0031942.1 mouse_genomes_project 7 46781253 46781879 + MGP_C3HHeJ_P0083481 Mamstr protein_coding protein_coding MGP_C3HHeJ_T0085125.1 MGP_C3HHeJ_G0032391.1 mouse_genomes_project 7 107314578 107315523 - MGP_C3HHeJ_P0085125 Olfr640 protein_coding protein_coding MGP_C3HHeJ_T0008908.1 MGP_C3HHeJ_G0007172.1 mouse_genomes_project 7 118537658 118544053 - Gm45020 lincRNA lincRNA MGP_C3HHeJ_T0082949.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35963402 35994381 - MGP_C3HHeJ_P0082949 Zfp507 protein_coding protein_coding MGP_C3HHeJ_T0082950.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35964786 35985436 - MGP_C3HHeJ_P0082950 Zfp507 protein_coding protein_coding MGP_C3HHeJ_T0082951.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35967033 35994359 - MGP_C3HHeJ_P0082951 Zfp507 protein_coding protein_coding MGP_C3HHeJ_T0082952.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35969863 35970568 - Zfp507 protein_coding processed_transcript MGP_C3HHeJ_T0082953.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35983123 35994378 - MGP_C3HHeJ_P0082953 Zfp507 protein_coding protein_coding MGP_C3HHeJ_T0082954.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35992401 35994346 - Zfp507 protein_coding retained_intron MGP_C3HHeJ_T0082955.1 MGP_C3HHeJ_G0031800.1 mouse_genomes_project 7 35993408 35994395 - Zfp507 protein_coding retained_intron MGP_C3HHeJ_T0002177.1 MGP_C3HHeJ_G0002098.1 mouse_genomes_project 7 37782290 37783354 - TEC TEC MGP_C3HHeJ_T0085004.1 MGP_C3HHeJ_G0032303.1 mouse_genomes_project 7 105287709 105301615 + MGP_C3HHeJ_P0085004 Art1 protein_coding protein_coding MGP_C3HHeJ_T0081464.1 MGP_C3HHeJ_G0031424.1 mouse_genomes_project 7 14922405 14931068 - MGP_C3HHeJ_P0081464 Calm3 protein_coding protein_coding MGP_C3HHeJ_T0081465.1 MGP_C3HHeJ_G0031424.1 mouse_genomes_project 7 14922427 14924208 - MGP_C3HHeJ_P0081465 Calm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081466.1 MGP_C3HHeJ_G0031424.1 mouse_genomes_project 7 14922961 14924246 - MGP_C3HHeJ_P0081466 Calm3 protein_coding protein_coding MGP_C3HHeJ_T0081467.1 MGP_C3HHeJ_G0031424.1 mouse_genomes_project 7 14924186 14930783 - Calm3 protein_coding processed_transcript MGP_C3HHeJ_T0010807.1 MGP_C3HHeJ_G0008940.1 mouse_genomes_project 7 66121373 66121490 - Mir6416 miRNA miRNA MGP_C3HHeJ_T0082244.1 MGP_C3HHeJ_G0031650.1 mouse_genomes_project 7 27564362 27572097 - MGP_C3HHeJ_P0082244 Med29 protein_coding protein_coding MGP_C3HHeJ_T0087371.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147436084 147443705 - MGP_C3HHeJ_P0087371 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087372.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147436087 147447030 - MGP_C3HHeJ_P0087372 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087373.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147436087 147443675 - MGP_C3HHeJ_P0087373 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087374.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147436087 147448844 - MGP_C3HHeJ_P0087374 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087375.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147436161 147439237 - Igf2 protein_coding processed_transcript MGP_C3HHeJ_T0087376.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147439964 147454355 - MGP_C3HHeJ_P0087376 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087377.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147440257 147449409 - MGP_C3HHeJ_P0087377 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087378.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147440560 147442227 - MGP_C3HHeJ_P0087378 Igf2 protein_coding protein_coding MGP_C3HHeJ_T0087379.1 MGP_C3HHeJ_G0032960.1 mouse_genomes_project 7 147441650 147448744 - Igf2 protein_coding retained_intron MGP_C3HHeJ_T0018131.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46698522 46705969 - processed_transcript processed_transcript MGP_C3HHeJ_T0018132.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46698675 46705969 - processed_transcript processed_transcript MGP_C3HHeJ_T0018133.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46698839 46705655 - processed_transcript retained_intron MGP_C3HHeJ_T0018134.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46698862 46706139 - processed_transcript processed_transcript MGP_C3HHeJ_T0018135.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46698958 46705969 - processed_transcript processed_transcript MGP_C3HHeJ_T0018136.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46699835 46705985 - processed_transcript retained_intron MGP_C3HHeJ_T0018137.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46700923 46701814 - processed_transcript processed_transcript MGP_C3HHeJ_T0018138.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46700950 46706006 - processed_transcript processed_transcript MGP_C3HHeJ_T0018139.1 MGP_C3HHeJ_G0015429.1 mouse_genomes_project 7 46704879 46705968 - processed_transcript retained_intron MGP_C3HHeJ_T0002269.1 MGP_C3HHeJ_G0002189.1 mouse_genomes_project 7 130940158 130941910 + TEC TEC MGP_C3HHeJ_T0082975.1 MGP_C3HHeJ_G0031804.1 mouse_genomes_project 7 38387726 38398497 - MGP_C3HHeJ_P0082975 Ccne1 protein_coding protein_coding MGP_C3HHeJ_T0082976.1 MGP_C3HHeJ_G0031804.1 mouse_genomes_project 7 38388410 38389246 - Ccne1 protein_coding retained_intron MGP_C3HHeJ_T0082977.1 MGP_C3HHeJ_G0031804.1 mouse_genomes_project 7 38388556 38389114 - Ccne1 protein_coding processed_transcript MGP_C3HHeJ_T0082978.1 MGP_C3HHeJ_G0031804.1 mouse_genomes_project 7 38390395 38397862 - MGP_C3HHeJ_P0082978 Ccne1 protein_coding protein_coding MGP_C3HHeJ_T0082979.1 MGP_C3HHeJ_G0031804.1 mouse_genomes_project 7 38392908 38398465 - MGP_C3HHeJ_P0082979 Ccne1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082384.1 MGP_C3HHeJ_G0031683.1 mouse_genomes_project 7 28533992 28535864 - MGP_C3HHeJ_P0082384 2200002D01Rik protein_coding protein_coding MGP_C3HHeJ_T0082385.1 MGP_C3HHeJ_G0031683.1 mouse_genomes_project 7 28535003 28535770 - 2200002D01Rik protein_coding retained_intron MGP_C3HHeJ_T0081569.1 MGP_C3HHeJ_G0031461.1 mouse_genomes_project 7 17453755 17457734 + MGP_C3HHeJ_P0081569 Six5 protein_coding protein_coding MGP_C3HHeJ_T0085390.1 MGP_C3HHeJ_G0032531.1 mouse_genomes_project 7 112286617 112287619 - MGP_C3HHeJ_P0085390 Olfr518 protein_coding protein_coding MGP_C3HHeJ_T0102257.1 MGP_C3HHeJ_G0040220.1 mouse_genomes_project 7 49574038 49575386 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085036.1 MGP_C3HHeJ_G0032308.1 mouse_genomes_project 7 105473944 105650975 + MGP_C3HHeJ_P0085036 Stim1 protein_coding protein_coding MGP_C3HHeJ_T0083972.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69466022 69600817 - MGP_C3HHeJ_P0083972 Lrrc28 protein_coding protein_coding MGP_C3HHeJ_T0083973.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69466023 69596781 - MGP_C3HHeJ_P0083973 Lrrc28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083974.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69467026 69537638 - Lrrc28 protein_coding processed_transcript MGP_C3HHeJ_T0083975.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69482191 69596817 - MGP_C3HHeJ_P0083975 Lrrc28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083976.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69482316 69490047 - Lrrc28 protein_coding processed_transcript MGP_C3HHeJ_T0083977.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69484306 69575692 - Lrrc28 protein_coding processed_transcript MGP_C3HHeJ_T0083978.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69484397 69563485 - Lrrc28 protein_coding processed_transcript MGP_C3HHeJ_T0083979.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69484407 69575641 - Lrrc28 protein_coding processed_transcript MGP_C3HHeJ_T0083980.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69499773 69600790 - MGP_C3HHeJ_P0083980 Lrrc28 protein_coding protein_coding MGP_C3HHeJ_T0083981.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69552214 69600793 - MGP_C3HHeJ_P0083981 Lrrc28 protein_coding protein_coding MGP_C3HHeJ_T0083982.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69553216 69575663 - Lrrc28 protein_coding processed_transcript MGP_C3HHeJ_T0083983.1 MGP_C3HHeJ_G0032063.1 mouse_genomes_project 7 69573726 69600854 - MGP_C3HHeJ_P0083983 Lrrc28 protein_coding protein_coding MGP_C3HHeJ_T0084416.1 MGP_C3HHeJ_G0032147.1 mouse_genomes_project 7 84862207 84866538 + Adamtsl3 protein_coding processed_transcript MGP_C3HHeJ_T0084417.1 MGP_C3HHeJ_G0032147.1 mouse_genomes_project 7 84862245 85152097 + MGP_C3HHeJ_P0084417 Adamtsl3 protein_coding protein_coding MGP_C3HHeJ_T0084418.1 MGP_C3HHeJ_G0032147.1 mouse_genomes_project 7 84863731 85150077 + MGP_C3HHeJ_P0084418 Adamtsl3 protein_coding protein_coding MGP_C3HHeJ_T0084419.1 MGP_C3HHeJ_G0032147.1 mouse_genomes_project 7 84938938 85000005 + Adamtsl3 protein_coding retained_intron MGP_C3HHeJ_T0084420.1 MGP_C3HHeJ_G0032147.1 mouse_genomes_project 7 85149423 85150422 + MGP_C3HHeJ_P0084420 Adamtsl3 protein_coding protein_coding MGP_C3HHeJ_T0015541.1 MGP_C3HHeJ_G0013645.1 mouse_genomes_project 7 24253232 24254184 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085905.1 MGP_C3HHeJ_G0032651.1 mouse_genomes_project 7 126009231 126020692 + MGP_C3HHeJ_P0085905 Plk1 protein_coding protein_coding MGP_C3HHeJ_T0085906.1 MGP_C3HHeJ_G0032651.1 mouse_genomes_project 7 126009299 126013792 + MGP_C3HHeJ_P0085906 Plk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085907.1 MGP_C3HHeJ_G0032651.1 mouse_genomes_project 7 126009373 126011438 + MGP_C3HHeJ_P0085907 Plk1 protein_coding protein_coding MGP_C3HHeJ_T0015724.1 MGP_C3HHeJ_G0013828.1 mouse_genomes_project 7 132255376 132256276 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015695.1 MGP_C3HHeJ_G0013799.1 mouse_genomes_project 7 112815836 112817234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081355.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14034586 14054133 + MGP_C3HHeJ_P0081355 Napa protein_coding protein_coding MGP_C3HHeJ_T0081356.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14034734 14049694 + Napa protein_coding processed_transcript MGP_C3HHeJ_T0081357.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14034758 14049293 + Napa protein_coding retained_intron MGP_C3HHeJ_T0081358.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14034764 14045466 + Napa protein_coding processed_transcript MGP_C3HHeJ_T0081359.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14045207 14050384 + Napa protein_coding retained_intron MGP_C3HHeJ_T0081360.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14049802 14052717 + Napa protein_coding retained_intron MGP_C3HHeJ_T0081361.1 MGP_C3HHeJ_G0031399.1 mouse_genomes_project 7 14051261 14052897 + Napa protein_coding processed_transcript MGP_C3HHeJ_T0008821.1 MGP_C3HHeJ_G0007115.1 mouse_genomes_project 7 74040362 74068517 + 4930441H08Rik lincRNA lincRNA MGP_C3HHeJ_T0015730.1 MGP_C3HHeJ_G0013834.1 mouse_genomes_project 7 138102765 138103711 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084033.1 MGP_C3HHeJ_G0032075.1 mouse_genomes_project 7 76136857 76211355 - MGP_C3HHeJ_P0084033 St8sia2 protein_coding protein_coding MGP_C3HHeJ_T0084034.1 MGP_C3HHeJ_G0032075.1 mouse_genomes_project 7 76158516 76211371 - MGP_C3HHeJ_P0084034 St8sia2 protein_coding protein_coding MGP_C3HHeJ_T0084708.1 MGP_C3HHeJ_G0032239.1 mouse_genomes_project 7 101370696 101411898 + MGP_C3HHeJ_P0084708 Gucy2d protein_coding protein_coding MGP_C3HHeJ_T0084709.1 MGP_C3HHeJ_G0032239.1 mouse_genomes_project 7 101373702 101411897 + MGP_C3HHeJ_P0084709 Gucy2d protein_coding protein_coding MGP_C3HHeJ_T0084710.1 MGP_C3HHeJ_G0032239.1 mouse_genomes_project 7 101399633 101408090 + MGP_C3HHeJ_P0084710 Gucy2d protein_coding protein_coding MGP_C3HHeJ_T0084711.1 MGP_C3HHeJ_G0032239.1 mouse_genomes_project 7 101403511 101411897 + Gucy2d protein_coding processed_transcript MGP_C3HHeJ_T0015701.1 MGP_C3HHeJ_G0013805.1 mouse_genomes_project 7 118762980 118763320 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010755.1 MGP_C3HHeJ_G0008888.1 mouse_genomes_project 7 23038999 23039124 - Gm27592 miRNA miRNA MGP_C3HHeJ_T0100852.1 MGP_C3HHeJ_G0039046.1 mouse_genomes_project 7 112958772 112958902 + Gm24888 snoRNA snoRNA MGP_C3HHeJ_T0086730.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135645843 135662542 + MGP_C3HHeJ_P0086730 Pstk protein_coding protein_coding MGP_C3HHeJ_T0086731.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135645848 135662539 + MGP_C3HHeJ_P0086731 Pstk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086732.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135645859 135648966 + Pstk protein_coding processed_transcript MGP_C3HHeJ_T0086733.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135647737 135662536 + Pstk protein_coding retained_intron MGP_C3HHeJ_T0086734.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135658627 135662539 + Pstk protein_coding processed_transcript MGP_C3HHeJ_T0086735.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135658959 135662430 + Pstk protein_coding retained_intron MGP_C3HHeJ_T0086736.1 MGP_C3HHeJ_G0032800.1 mouse_genomes_project 7 135659200 135662535 + Pstk protein_coding processed_transcript MGP_C3HHeJ_T0086567.1 MGP_C3HHeJ_G0032770.1 mouse_genomes_project 7 132224091 132252015 + MGP_C3HHeJ_P0086567 Itgax protein_coding protein_coding MGP_C3HHeJ_T0086568.1 MGP_C3HHeJ_G0032770.1 mouse_genomes_project 7 132224095 132228616 + MGP_C3HHeJ_P0086568 Itgax protein_coding protein_coding MGP_C3HHeJ_T0086569.1 MGP_C3HHeJ_G0032770.1 mouse_genomes_project 7 132229320 132230026 + Itgax protein_coding retained_intron MGP_C3HHeJ_T0086570.1 MGP_C3HHeJ_G0032770.1 mouse_genomes_project 7 132245511 132246250 + Itgax protein_coding retained_intron MGP_C3HHeJ_T0083279.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45931481 45937897 + MGP_C3HHeJ_P0083279 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083280.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45931714 45937910 + MGP_C3HHeJ_P0083280 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083281.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45931834 45937906 + Akt1s1 protein_coding retained_intron MGP_C3HHeJ_T0083282.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45932071 45935435 + MGP_C3HHeJ_P0083282 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083283.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45932119 45937225 + MGP_C3HHeJ_P0083283 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083284.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45932497 45936525 + MGP_C3HHeJ_P0083284 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083285.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45932506 45937907 + MGP_C3HHeJ_P0083285 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083286.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45932886 45935352 + MGP_C3HHeJ_P0083286 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083287.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45933982 45935127 + MGP_C3HHeJ_P0083287 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083288.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45935059 45937175 + MGP_C3HHeJ_P0083288 Akt1s1 protein_coding protein_coding MGP_C3HHeJ_T0083289.1 MGP_C3HHeJ_G0031888.1 mouse_genomes_project 7 45935408 45937133 + Akt1s1 protein_coding retained_intron MGP_C3HHeJ_T0015569.1 MGP_C3HHeJ_G0013673.1 mouse_genomes_project 7 33867712 33868471 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085206.1 MGP_C3HHeJ_G0032443.1 mouse_genomes_project 7 108637092 108638218 + MGP_C3HHeJ_P0085206 Olfr692 protein_coding protein_coding MGP_C3HHeJ_T0102190.1 MGP_C3HHeJ_G0040154.1 mouse_genomes_project 7 13247918 13248286 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015647.1 MGP_C3HHeJ_G0013751.1 mouse_genomes_project 7 81786061 81786269 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086951.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144569310 144582947 - Adam8 protein_coding retained_intron MGP_C3HHeJ_T0086952.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144569310 144578819 - Adam8 protein_coding retained_intron MGP_C3HHeJ_T0086953.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144569310 144582947 - MGP_C3HHeJ_P0086953 Adam8 protein_coding protein_coding MGP_C3HHeJ_T0086954.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144569310 144582933 - MGP_C3HHeJ_P0086954 Adam8 protein_coding protein_coding MGP_C3HHeJ_T0086955.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144569772 144570747 - Adam8 protein_coding processed_transcript MGP_C3HHeJ_T0086956.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144574238 144582947 - MGP_C3HHeJ_P0086956 Adam8 protein_coding protein_coding MGP_C3HHeJ_T0086957.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144578038 144578815 - Adam8 protein_coding processed_transcript MGP_C3HHeJ_T0086958.1 MGP_C3HHeJ_G0032854.1 mouse_genomes_project 7 144579803 144582893 - MGP_C3HHeJ_P0086958 Adam8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085337.1 MGP_C3HHeJ_G0032485.1 mouse_genomes_project 7 110434606 110435554 + MGP_C3HHeJ_P0085337 Olfr17 protein_coding protein_coding MGP_C3HHeJ_T0081737.1 MGP_C3HHeJ_G0031516.1 mouse_genomes_project 7 22624982 22625955 + MGP_C3HHeJ_P0081737 Vmn1r180 protein_coding protein_coding MGP_C3HHeJ_T0083129.1 MGP_C3HHeJ_G0031861.1 mouse_genomes_project 7 45249238 45261453 - MGP_C3HHeJ_P0083129 protein_coding protein_coding MGP_C3HHeJ_T0084566.1 MGP_C3HHeJ_G0032209.1 mouse_genomes_project 7 93163518 93171306 - MGP_C3HHeJ_P0084566 Tmem126b protein_coding protein_coding MGP_C3HHeJ_T0084567.1 MGP_C3HHeJ_G0032209.1 mouse_genomes_project 7 93165263 93171300 - Tmem126b protein_coding retained_intron MGP_C3HHeJ_T0005229.1 MGP_C3HHeJ_G0004429.1 mouse_genomes_project 7 132881158 132882256 - Gm44672 antisense antisense MGP_C3HHeJ_T0081078.1 MGP_C3HHeJ_G0031273.1 mouse_genomes_project 7 1938328 1958338 + MGP_C3HHeJ_P0081078 Ssc5d protein_coding protein_coding MGP_C3HHeJ_T0002253.1 MGP_C3HHeJ_G0002173.1 mouse_genomes_project 7 123215530 123220070 + TEC TEC MGP_C3HHeJ_T0010742.1 MGP_C3HHeJ_G0008875.1 mouse_genomes_project 7 114751 114820 + Mir295 miRNA miRNA MGP_C3HHeJ_T0084439.1 MGP_C3HHeJ_G0032154.1 mouse_genomes_project 7 86196308 86206657 + MGP_C3HHeJ_P0084439 Stard5 protein_coding protein_coding MGP_C3HHeJ_T0084440.1 MGP_C3HHeJ_G0032154.1 mouse_genomes_project 7 86196349 86197811 + Stard5 protein_coding retained_intron MGP_C3HHeJ_T0084441.1 MGP_C3HHeJ_G0032154.1 mouse_genomes_project 7 86196349 86217455 + MGP_C3HHeJ_P0084441 Stard5 protein_coding protein_coding MGP_C3HHeJ_T0084442.1 MGP_C3HHeJ_G0032154.1 mouse_genomes_project 7 86196365 86202414 + Stard5 protein_coding retained_intron MGP_C3HHeJ_T0084443.1 MGP_C3HHeJ_G0032154.1 mouse_genomes_project 7 86196892 86197695 + Stard5 protein_coding processed_transcript MGP_C3HHeJ_T0084715.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101527837 101596701 - MGP_C3HHeJ_P0084715 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084716.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101529625 101596468 - MGP_C3HHeJ_P0084716 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084717.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101531287 101596473 - MGP_C3HHeJ_P0084717 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084718.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101531947 101534900 - Emsy protein_coding retained_intron MGP_C3HHeJ_T0084719.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101534163 101535679 - Emsy protein_coding processed_transcript MGP_C3HHeJ_T0084720.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101535787 101553558 - MGP_C3HHeJ_P0084720 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084721.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101537156 101542995 - Emsy protein_coding retained_intron MGP_C3HHeJ_T0084722.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101537708 101556091 - MGP_C3HHeJ_P0084722 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084723.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101541141 101543455 - Emsy protein_coding retained_intron MGP_C3HHeJ_T0084724.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101543263 101596517 - MGP_C3HHeJ_P0084724 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084725.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101570223 101596486 - MGP_C3HHeJ_P0084725 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084726.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101577212 101585120 - MGP_C3HHeJ_P0084726 Emsy protein_coding protein_coding MGP_C3HHeJ_T0084727.1 MGP_C3HHeJ_G0032241.1 mouse_genomes_project 7 101582980 101596705 - Emsy protein_coding retained_intron MGP_C3HHeJ_T0008826.1 MGP_C3HHeJ_G0007120.1 mouse_genomes_project 7 75253495 75256689 + Gm44725 lincRNA lincRNA MGP_C3HHeJ_T0081133.1 MGP_C3HHeJ_G0031300.1 mouse_genomes_project 7 3273506 3291263 + MGP_C3HHeJ_P0081133 Zscan5b protein_coding protein_coding MGP_C3HHeJ_T0081134.1 MGP_C3HHeJ_G0031300.1 mouse_genomes_project 7 3273523 3283251 + MGP_C3HHeJ_P0081134 Zscan5b protein_coding protein_coding MGP_C3HHeJ_T0081135.1 MGP_C3HHeJ_G0031300.1 mouse_genomes_project 7 3282025 3291030 + MGP_C3HHeJ_P0081135 Zscan5b protein_coding protein_coding MGP_C3HHeJ_T0086846.1 MGP_C3HHeJ_G0032824.1 mouse_genomes_project 7 138262613 138607028 - MGP_C3HHeJ_P0086846 Adam12 protein_coding protein_coding MGP_C3HHeJ_T0086847.1 MGP_C3HHeJ_G0032824.1 mouse_genomes_project 7 138265610 138340600 - MGP_C3HHeJ_P0086847 Adam12 protein_coding protein_coding MGP_C3HHeJ_T0086848.1 MGP_C3HHeJ_G0032824.1 mouse_genomes_project 7 138355307 138613921 - MGP_C3HHeJ_P0086848 Adam12 protein_coding protein_coding MGP_C3HHeJ_T0086849.1 MGP_C3HHeJ_G0032824.1 mouse_genomes_project 7 138361441 138614062 - MGP_C3HHeJ_P0086849 Adam12 protein_coding protein_coding MGP_C3HHeJ_T0086850.1 MGP_C3HHeJ_G0032824.1 mouse_genomes_project 7 138547229 138548214 - Adam12 protein_coding retained_intron MGP_C3HHeJ_T0086851.1 MGP_C3HHeJ_G0032824.1 mouse_genomes_project 7 138573407 138607303 - Adam12 protein_coding processed_transcript MGP_C3HHeJ_T0015542.1 MGP_C3HHeJ_G0013646.1 mouse_genomes_project 7 24274351 24275663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015718.1 MGP_C3HHeJ_G0013822.1 mouse_genomes_project 7 130804226 130804530 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083078.1 MGP_C3HHeJ_G0031836.1 mouse_genomes_project 7 44527001 44532104 - MGP_C3HHeJ_P0083078 Cd33 protein_coding protein_coding MGP_C3HHeJ_T0083079.1 MGP_C3HHeJ_G0031836.1 mouse_genomes_project 7 44527532 44531681 - MGP_C3HHeJ_P0083079 Cd33 protein_coding protein_coding MGP_C3HHeJ_T0083080.1 MGP_C3HHeJ_G0031836.1 mouse_genomes_project 7 44527868 44532418 - MGP_C3HHeJ_P0083080 Cd33 protein_coding protein_coding MGP_C3HHeJ_T0083081.1 MGP_C3HHeJ_G0031836.1 mouse_genomes_project 7 44529358 44532090 - Cd33 protein_coding retained_intron MGP_C3HHeJ_T0083082.1 MGP_C3HHeJ_G0031836.1 mouse_genomes_project 7 44531045 44531957 - Cd33 protein_coding processed_transcript MGP_C3HHeJ_T0081234.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10489352 10493749 + MGP_C3HHeJ_P0081234 Rps5 protein_coding protein_coding MGP_C3HHeJ_T0081235.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10489352 10493748 + MGP_C3HHeJ_P0081235 Rps5 protein_coding protein_coding MGP_C3HHeJ_T0081236.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10489380 10493557 + MGP_C3HHeJ_P0081236 Rps5 protein_coding protein_coding MGP_C3HHeJ_T0081237.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10489393 10493282 + Rps5 protein_coding retained_intron MGP_C3HHeJ_T0081238.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10489398 10490427 + Rps5 protein_coding retained_intron MGP_C3HHeJ_T0081239.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10489499 10493557 + MGP_C3HHeJ_P0081239 Rps5 protein_coding protein_coding MGP_C3HHeJ_T0081240.1 MGP_C3HHeJ_G0031356.1 mouse_genomes_project 7 10493099 10493747 + Rps5 protein_coding retained_intron MGP_C3HHeJ_T0084529.1 MGP_C3HHeJ_G0032198.1 mouse_genomes_project 7 92328228 92489088 + protein_coding retained_intron MGP_C3HHeJ_T0084530.1 MGP_C3HHeJ_G0032198.1 mouse_genomes_project 7 92328246 92524837 + MGP_C3HHeJ_P0084530 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084531.1 MGP_C3HHeJ_G0032198.1 mouse_genomes_project 7 92328370 92339020 + protein_coding processed_transcript MGP_C3HHeJ_T0084532.1 MGP_C3HHeJ_G0032198.1 mouse_genomes_project 7 92328722 92521905 + protein_coding retained_intron MGP_C3HHeJ_T0084533.1 MGP_C3HHeJ_G0032198.1 mouse_genomes_project 7 92422899 92497402 + protein_coding processed_transcript MGP_C3HHeJ_T0084534.1 MGP_C3HHeJ_G0032198.1 mouse_genomes_project 7 92500978 92524902 + MGP_C3HHeJ_P0084534 protein_coding protein_coding MGP_C3HHeJ_T0015516.1 MGP_C3HHeJ_G0013620.1 mouse_genomes_project 7 11992647 11994815 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086966.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144691897 144697551 - MGP_C3HHeJ_P0086966 Fuom protein_coding protein_coding MGP_C3HHeJ_T0086967.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144693638 144697554 - MGP_C3HHeJ_P0086967 Fuom protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086968.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144694597 144697524 - MGP_C3HHeJ_P0086968 Fuom protein_coding protein_coding MGP_C3HHeJ_T0086969.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144694597 144697589 - MGP_C3HHeJ_P0086969 Fuom protein_coding protein_coding MGP_C3HHeJ_T0086970.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144694599 144695096 - Fuom protein_coding retained_intron MGP_C3HHeJ_T0086971.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144694601 144697468 - Fuom protein_coding processed_transcript MGP_C3HHeJ_T0086972.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144694621 144696372 - Fuom protein_coding retained_intron MGP_C3HHeJ_T0086973.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144695016 144697492 - MGP_C3HHeJ_P0086973 Fuom protein_coding protein_coding MGP_C3HHeJ_T0086974.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144695684 144697554 - MGP_C3HHeJ_P0086974 Fuom protein_coding protein_coding MGP_C3HHeJ_T0086975.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144696230 144697454 - Fuom protein_coding processed_transcript MGP_C3HHeJ_T0086976.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144696282 144697114 - Fuom protein_coding processed_transcript MGP_C3HHeJ_T0086977.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144696291 144697554 - Fuom protein_coding retained_intron MGP_C3HHeJ_T0086978.1 MGP_C3HHeJ_G0032860.1 mouse_genomes_project 7 144696406 144697478 - Fuom protein_coding retained_intron MGP_C3HHeJ_T0081736.1 MGP_C3HHeJ_G0031515.1 mouse_genomes_project 7 22600392 22601364 + MGP_C3HHeJ_P0081736 Vmn1r179 protein_coding protein_coding MGP_C3HHeJ_T0085425.1 MGP_C3HHeJ_G0032542.1 mouse_genomes_project 7 113151182 113159682 + MGP_C3HHeJ_P0085425 Akip1 protein_coding protein_coding MGP_C3HHeJ_T0085426.1 MGP_C3HHeJ_G0032542.1 mouse_genomes_project 7 113151244 113156466 + MGP_C3HHeJ_P0085426 Akip1 protein_coding protein_coding MGP_C3HHeJ_T0085427.1 MGP_C3HHeJ_G0032542.1 mouse_genomes_project 7 113156325 113159461 + Akip1 protein_coding processed_transcript MGP_C3HHeJ_T0102224.1 MGP_C3HHeJ_G0040187.1 mouse_genomes_project 7 42457970 42458210 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002285.1 MGP_C3HHeJ_G0002205.1 mouse_genomes_project 7 148147818 148151320 - TEC TEC MGP_C3HHeJ_T0015627.1 MGP_C3HHeJ_G0013731.1 mouse_genomes_project 7 67056277 67057533 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086279.1 MGP_C3HHeJ_G0032711.1 mouse_genomes_project 7 131005593 131022228 - MGP_C3HHeJ_P0086279 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085821.1 MGP_C3HHeJ_G0032629.1 mouse_genomes_project 7 124419710 124430760 - MGP_C3HHeJ_P0085821 Pdzd9 protein_coding protein_coding MGP_C3HHeJ_T0085822.1 MGP_C3HHeJ_G0032629.1 mouse_genomes_project 7 124419768 124430667 - Pdzd9 protein_coding processed_transcript MGP_C3HHeJ_T0010850.1 MGP_C3HHeJ_G0008983.1 mouse_genomes_project 7 148613864 148613930 + Gm22064 miRNA miRNA MGP_C3HHeJ_T0005134.1 MGP_C3HHeJ_G0004363.1 mouse_genomes_project 7 41316282 41400319 - antisense antisense MGP_C3HHeJ_T0005135.1 MGP_C3HHeJ_G0004363.1 mouse_genomes_project 7 41347788 41397706 - antisense antisense MGP_C3HHeJ_T0005136.1 MGP_C3HHeJ_G0004363.1 mouse_genomes_project 7 41349901 41374730 - antisense antisense MGP_C3HHeJ_T0005137.1 MGP_C3HHeJ_G0004363.1 mouse_genomes_project 7 41374912 41397984 - antisense antisense MGP_C3HHeJ_T0084498.1 MGP_C3HHeJ_G0032187.1 mouse_genomes_project 7 89567323 89614474 + MGP_C3HHeJ_P0084498 protein_coding protein_coding MGP_C3HHeJ_T0018167.1 MGP_C3HHeJ_G0015438.1 mouse_genomes_project 7 76146169 76155708 + Gm38143 processed_transcript processed_transcript MGP_C3HHeJ_T0084263.1 MGP_C3HHeJ_G0032116.1 mouse_genomes_project 7 82777867 82780095 + MGP_C3HHeJ_P0084263 Hddc3 protein_coding protein_coding MGP_C3HHeJ_T0084264.1 MGP_C3HHeJ_G0032116.1 mouse_genomes_project 7 82777879 82778743 + MGP_C3HHeJ_P0084264 Hddc3 protein_coding protein_coding MGP_C3HHeJ_T0084265.1 MGP_C3HHeJ_G0032116.1 mouse_genomes_project 7 82778329 82779145 + MGP_C3HHeJ_P0084265 Hddc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084266.1 MGP_C3HHeJ_G0032116.1 mouse_genomes_project 7 82778542 82783960 + MGP_C3HHeJ_P0084266 Hddc3 protein_coding protein_coding MGP_C3HHeJ_T0015483.1 MGP_C3HHeJ_G0013587.1 mouse_genomes_project 7 449070 449371 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082330.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28150083 28224888 - MGP_C3HHeJ_P0082330 Actn4 protein_coding protein_coding MGP_C3HHeJ_T0082331.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28150084 28224731 - MGP_C3HHeJ_P0082331 Actn4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082332.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28150465 28164198 - Actn4 protein_coding processed_transcript MGP_C3HHeJ_T0082333.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28151022 28151644 - Actn4 protein_coding retained_intron MGP_C3HHeJ_T0082334.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28152438 28153818 - Actn4 protein_coding retained_intron MGP_C3HHeJ_T0082335.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28155406 28224771 - MGP_C3HHeJ_P0082335 Actn4 protein_coding protein_coding MGP_C3HHeJ_T0082336.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28158721 28164490 - Actn4 protein_coding processed_transcript MGP_C3HHeJ_T0082337.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28163826 28176022 - MGP_C3HHeJ_P0082337 Actn4 protein_coding protein_coding MGP_C3HHeJ_T0082338.1 MGP_C3HHeJ_G0031671.1 mouse_genomes_project 7 28170181 28206769 - MGP_C3HHeJ_P0082338 Actn4 protein_coding protein_coding MGP_C3HHeJ_T0082110.1 MGP_C3HHeJ_G0031613.1 mouse_genomes_project 7 26381263 26404678 - MGP_C3HHeJ_P0082110 Ltbp4 protein_coding protein_coding MGP_C3HHeJ_T0008734.1 MGP_C3HHeJ_G0007048.1 mouse_genomes_project 7 23962388 23966559 + D930028M14Rik lincRNA lincRNA MGP_C3HHeJ_T0008735.1 MGP_C3HHeJ_G0007048.1 mouse_genomes_project 7 23965000 23966151 + D930028M14Rik lincRNA lincRNA MGP_C3HHeJ_T0015716.1 MGP_C3HHeJ_G0013820.1 mouse_genomes_project 7 130736729 130736958 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085862.1 MGP_C3HHeJ_G0032642.1 mouse_genomes_project 7 125557628 125591596 + MGP_C3HHeJ_P0085862 Scnn1g protein_coding protein_coding MGP_C3HHeJ_T0081114.1 MGP_C3HHeJ_G0031290.1 mouse_genomes_project 7 2167473 2168584 - MGP_C3HHeJ_P0081114 Vmn1r55 protein_coding protein_coding MGP_C3HHeJ_T0002168.1 MGP_C3HHeJ_G0002089.1 mouse_genomes_project 7 35196260 35196877 - TEC TEC MGP_C3HHeJ_T0011601.1 MGP_C3HHeJ_G0009734.1 mouse_genomes_project 7 131051710 131051956 + Gm25333 misc_RNA misc_RNA MGP_C3HHeJ_T0085216.1 MGP_C3HHeJ_G0032446.1 mouse_genomes_project 7 108673406 108677577 + MGP_C3HHeJ_P0085216 Cnga4 protein_coding protein_coding MGP_C3HHeJ_T0082868.1 MGP_C3HHeJ_G0031785.1 mouse_genomes_project 7 35189709 35199859 - MGP_C3HHeJ_P0082868 Cebpg protein_coding protein_coding MGP_C3HHeJ_T0082869.1 MGP_C3HHeJ_G0031785.1 mouse_genomes_project 7 35193183 35194793 - Cebpg protein_coding retained_intron MGP_C3HHeJ_T0082870.1 MGP_C3HHeJ_G0031785.1 mouse_genomes_project 7 35193602 35199226 - MGP_C3HHeJ_P0082870 Cebpg protein_coding protein_coding MGP_C3HHeJ_T0082871.1 MGP_C3HHeJ_G0031785.1 mouse_genomes_project 7 35194152 35199269 - Cebpg protein_coding processed_transcript MGP_C3HHeJ_T0085456.1 MGP_C3HHeJ_G0032550.1 mouse_genomes_project 7 113480969 113517629 + MGP_C3HHeJ_P0085456 Ipo7 protein_coding protein_coding MGP_C3HHeJ_T0087428.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147901469 147944627 + MGP_C3HHeJ_P0087428 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0087429.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147901622 147944627 + MGP_C3HHeJ_P0087429 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0087430.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147901852 147944627 + MGP_C3HHeJ_P0087430 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0087431.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147902361 148224525 + MGP_C3HHeJ_P0087431 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0087432.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147902658 148223608 + MGP_C3HHeJ_P0087432 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0087433.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147903458 147944627 + MGP_C3HHeJ_P0087433 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0087434.1 MGP_C3HHeJ_G0032970.1 mouse_genomes_project 7 147904301 147944627 + MGP_C3HHeJ_P0087434 Kcnq1 protein_coding protein_coding MGP_C3HHeJ_T0082790.1 MGP_C3HHeJ_G0031765.1 mouse_genomes_project 7 30733204 30747804 + MGP_C3HHeJ_P0082790 Scgb2b2 protein_coding protein_coding MGP_C3HHeJ_T0082792.1 MGP_C3HHeJ_G0031765.1 mouse_genomes_project 7 30745587 30747804 + MGP_C3HHeJ_P0082792 Scgb2b2 protein_coding protein_coding MGP_C3HHeJ_T0081989.1 MGP_C3HHeJ_G0031581.1 mouse_genomes_project 7 24578186 24596221 + MGP_C3HHeJ_P0081989 Tgfb1 protein_coding protein_coding MGP_C3HHeJ_T0081990.1 MGP_C3HHeJ_G0031581.1 mouse_genomes_project 7 24579332 24579909 + Tgfb1 protein_coding processed_transcript MGP_C3HHeJ_T0081991.1 MGP_C3HHeJ_G0031581.1 mouse_genomes_project 7 24580074 24582647 + Tgfb1 protein_coding retained_intron MGP_C3HHeJ_T0081992.1 MGP_C3HHeJ_G0031581.1 mouse_genomes_project 7 24580111 24588410 + MGP_C3HHeJ_P0081992 Tgfb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081993.1 MGP_C3HHeJ_G0031581.1 mouse_genomes_project 7 24583614 24588371 + Tgfb1 protein_coding retained_intron MGP_C3HHeJ_T0098184.1 MGP_C3HHeJ_G0036396.1 mouse_genomes_project 7 136355964 136356084 + n-R5s159 rRNA rRNA MGP_C3HHeJ_T0086524.1 MGP_C3HHeJ_G0032762.1 mouse_genomes_project 7 131991241 131996160 + Kat8 protein_coding retained_intron MGP_C3HHeJ_T0086525.1 MGP_C3HHeJ_G0032762.1 mouse_genomes_project 7 131991241 132007057 + MGP_C3HHeJ_P0086525 Kat8 protein_coding protein_coding MGP_C3HHeJ_T0086526.1 MGP_C3HHeJ_G0032762.1 mouse_genomes_project 7 131999844 132000636 + Kat8 protein_coding retained_intron MGP_C3HHeJ_T0081007.1 MGP_C3HHeJ_G0031255.1 mouse_genomes_project 7 1598248 1600691 - MGP_C3HHeJ_P0081007 Tmem86b protein_coding protein_coding MGP_C3HHeJ_T0081008.1 MGP_C3HHeJ_G0031255.1 mouse_genomes_project 7 1598250 1600396 - MGP_C3HHeJ_P0081008 Tmem86b protein_coding protein_coding MGP_C3HHeJ_T0081009.1 MGP_C3HHeJ_G0031255.1 mouse_genomes_project 7 1598614 1601631 - MGP_C3HHeJ_P0081009 Tmem86b protein_coding protein_coding MGP_C3HHeJ_T0081010.1 MGP_C3HHeJ_G0031255.1 mouse_genomes_project 7 1598812 1600545 - MGP_C3HHeJ_P0081010 Tmem86b protein_coding protein_coding MGP_C3HHeJ_T0081973.1 MGP_C3HHeJ_G0031578.1 mouse_genomes_project 7 24548761 24557630 + MGP_C3HHeJ_P0081973 Exosc5 protein_coding protein_coding MGP_C3HHeJ_T0081974.1 MGP_C3HHeJ_G0031578.1 mouse_genomes_project 7 24548788 24561193 + MGP_C3HHeJ_P0081974 Exosc5 protein_coding protein_coding MGP_C3HHeJ_T0081975.1 MGP_C3HHeJ_G0031578.1 mouse_genomes_project 7 24548809 24557630 + Exosc5 protein_coding retained_intron MGP_C3HHeJ_T0081976.1 MGP_C3HHeJ_G0031578.1 mouse_genomes_project 7 24548809 24555904 + MGP_C3HHeJ_P0081976 Exosc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081977.1 MGP_C3HHeJ_G0031578.1 mouse_genomes_project 7 24548815 24553999 + MGP_C3HHeJ_P0081977 Exosc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081978.1 MGP_C3HHeJ_G0031578.1 mouse_genomes_project 7 24553984 24556372 + Exosc5 protein_coding retained_intron MGP_C3HHeJ_T0086271.1 MGP_C3HHeJ_G0032709.1 mouse_genomes_project 7 130979747 130983811 + MGP_C3HHeJ_P0086271 Cdipt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086272.1 MGP_C3HHeJ_G0032709.1 mouse_genomes_project 7 130979769 130983813 + MGP_C3HHeJ_P0086272 Cdipt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086273.1 MGP_C3HHeJ_G0032709.1 mouse_genomes_project 7 130979899 130982963 + MGP_C3HHeJ_P0086273 Cdipt protein_coding protein_coding MGP_C3HHeJ_T0086274.1 MGP_C3HHeJ_G0032709.1 mouse_genomes_project 7 130980041 130983349 + MGP_C3HHeJ_P0086274 Cdipt protein_coding protein_coding MGP_C3HHeJ_T0086275.1 MGP_C3HHeJ_G0032709.1 mouse_genomes_project 7 130980075 130983817 + MGP_C3HHeJ_P0086275 Cdipt protein_coding protein_coding MGP_C3HHeJ_T0086276.1 MGP_C3HHeJ_G0032709.1 mouse_genomes_project 7 130981544 130982787 + Cdipt protein_coding retained_intron MGP_C3HHeJ_T0081762.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22987452 22996116 - MGP_C3HHeJ_P0081762 Zfp61 protein_coding protein_coding MGP_C3HHeJ_T0081763.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22987470 22992429 - MGP_C3HHeJ_P0081763 Zfp61 protein_coding protein_coding MGP_C3HHeJ_T0081764.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22988432 22992159 - Zfp61 protein_coding processed_transcript MGP_C3HHeJ_T0081765.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22988575 22995751 - MGP_C3HHeJ_P0081765 Zfp61 protein_coding protein_coding MGP_C3HHeJ_T0081766.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22989772 22991996 - Zfp61 protein_coding retained_intron MGP_C3HHeJ_T0081767.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22991518 22995739 - Zfp61 protein_coding processed_transcript MGP_C3HHeJ_T0081768.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22991761 22995842 - Zfp61 protein_coding retained_intron MGP_C3HHeJ_T0081769.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22994076 23000065 - Zfp61 protein_coding processed_transcript MGP_C3HHeJ_T0081770.1 MGP_C3HHeJ_G0031527.1 mouse_genomes_project 7 22994539 22996078 - Zfp61 protein_coding retained_intron MGP_C3HHeJ_T0087014.1 MGP_C3HHeJ_G0032882.1 mouse_genomes_project 7 145256134 145262602 + MGP_C3HHeJ_P0087014 Olfr53 protein_coding protein_coding MGP_C3HHeJ_T0015725.1 MGP_C3HHeJ_G0013829.1 mouse_genomes_project 7 132733159 132733459 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086762.1 MGP_C3HHeJ_G0032809.1 mouse_genomes_project 7 136870690 136889641 - MGP_C3HHeJ_P0086762 Oat protein_coding protein_coding MGP_C3HHeJ_T0085169.1 MGP_C3HHeJ_G0032412.1 mouse_genomes_project 7 107627885 107676610 - MGP_C3HHeJ_P0085169 Trim30a protein_coding protein_coding MGP_C3HHeJ_T0085170.1 MGP_C3HHeJ_G0032412.1 mouse_genomes_project 7 107630194 107631471 - Trim30a protein_coding retained_intron MGP_C3HHeJ_T0085171.1 MGP_C3HHeJ_G0032412.1 mouse_genomes_project 7 107630219 107631165 - Trim30a protein_coding processed_transcript MGP_C3HHeJ_T0085172.1 MGP_C3HHeJ_G0032412.1 mouse_genomes_project 7 107630534 107631117 - Trim30a protein_coding retained_intron MGP_C3HHeJ_T0086396.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131568992 131584752 + Srcap protein_coding retained_intron MGP_C3HHeJ_T0086397.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131568992 131587239 + MGP_C3HHeJ_P0086397 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086398.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131569011 131579497 + MGP_C3HHeJ_P0086398 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086399.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131569036 131583037 + MGP_C3HHeJ_P0086399 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086400.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131569121 131572420 + Srcap protein_coding processed_transcript MGP_C3HHeJ_T0086401.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131569310 131573007 + Srcap protein_coding processed_transcript MGP_C3HHeJ_T0086402.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131569474 131597161 + MGP_C3HHeJ_P0086402 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086403.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131570001 131594301 + Srcap protein_coding retained_intron MGP_C3HHeJ_T0086404.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131570001 131594301 + MGP_C3HHeJ_P0086404 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086405.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131570027 131620035 + MGP_C3HHeJ_P0086405 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086406.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131573003 131576631 + Srcap protein_coding retained_intron MGP_C3HHeJ_T0086407.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131573158 131619595 + MGP_C3HHeJ_P0086407 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086408.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131573158 131619595 + MGP_C3HHeJ_P0086408 Srcap protein_coding protein_coding MGP_C3HHeJ_T0086410.1 MGP_C3HHeJ_G0032739.1 mouse_genomes_project 7 131591684 131593717 + Srcap protein_coding retained_intron MGP_C3HHeJ_T0102159.1 MGP_C3HHeJ_G0040123.1 mouse_genomes_project 7 9476683 9476971 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085107.1 MGP_C3HHeJ_G0032375.1 mouse_genomes_project 7 107070009 107070972 - MGP_C3HHeJ_P0085107 Olfr67 protein_coding protein_coding MGP_C3HHeJ_T0015491.1 MGP_C3HHeJ_G0013595.1 mouse_genomes_project 7 1314572 1314750 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083831.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66023477 66142111 + MGP_C3HHeJ_P0083831 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083832.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66023487 66141468 + MGP_C3HHeJ_P0083832 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083833.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66023487 66098201 + MGP_C3HHeJ_P0083833 Trpm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083834.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66023570 66141468 + MGP_C3HHeJ_P0083834 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083835.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053164 66082801 + Trpm1 protein_coding retained_intron MGP_C3HHeJ_T0083836.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053242 66070678 + Trpm1 protein_coding processed_transcript MGP_C3HHeJ_T0083837.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053242 66096201 + MGP_C3HHeJ_P0083837 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083838.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053333 66096129 + Trpm1 protein_coding retained_intron MGP_C3HHeJ_T0083839.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053335 66142093 + MGP_C3HHeJ_P0083839 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083840.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053336 66073353 + MGP_C3HHeJ_P0083840 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083841.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053338 66090100 + MGP_C3HHeJ_P0083841 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083842.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053367 66090100 + MGP_C3HHeJ_P0083842 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083843.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66053384 66073326 + MGP_C3HHeJ_P0083843 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083844.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66070656 66073469 + MGP_C3HHeJ_P0083844 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083845.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66074445 66082265 + Trpm1 protein_coding processed_transcript MGP_C3HHeJ_T0083846.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66074445 66079703 + MGP_C3HHeJ_P0083846 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083847.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66081399 66091721 + Trpm1 protein_coding retained_intron MGP_C3HHeJ_T0083848.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66082284 66095125 + MGP_C3HHeJ_P0083848 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0083849.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66091239 66094588 + Trpm1 protein_coding retained_intron MGP_C3HHeJ_T0083850.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66098042 66113994 + Trpm1 protein_coding retained_intron MGP_C3HHeJ_T0083851.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66098409 66102728 + Trpm1 protein_coding processed_transcript MGP_C3HHeJ_T0083852.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66116200 66140476 + Trpm1 protein_coding retained_intron MGP_C3HHeJ_T0083853.1 MGP_C3HHeJ_G0032038.1 mouse_genomes_project 7 66116413 66140356 + MGP_C3HHeJ_P0083853 Trpm1 protein_coding protein_coding MGP_C3HHeJ_T0008835.1 MGP_C3HHeJ_G0007127.1 mouse_genomes_project 7 75795254 75800870 + Gm44734 lincRNA lincRNA MGP_C3HHeJ_T0081206.1 MGP_C3HHeJ_G0031344.1 mouse_genomes_project 7 9865853 9866849 - MGP_C3HHeJ_P0081206 Vmn1r83 protein_coding protein_coding MGP_C3HHeJ_T0084355.1 MGP_C3HHeJ_G0032129.1 mouse_genomes_project 7 83602057 83660471 + MGP_C3HHeJ_P0084355 Slc28a1 protein_coding protein_coding MGP_C3HHeJ_T0084356.1 MGP_C3HHeJ_G0032129.1 mouse_genomes_project 7 83602112 83660471 + MGP_C3HHeJ_P0084356 Slc28a1 protein_coding protein_coding MGP_C3HHeJ_T0081738.1 MGP_C3HHeJ_G0031517.1 mouse_genomes_project 7 22665071 22666449 + MGP_C3HHeJ_P0081738 Vmn1r181 protein_coding protein_coding MGP_C3HHeJ_T0082804.1 MGP_C3HHeJ_G0031775.1 mouse_genomes_project 7 34111263 34226249 - MGP_C3HHeJ_P0082804 Wtip protein_coding protein_coding MGP_C3HHeJ_T0082805.1 MGP_C3HHeJ_G0031775.1 mouse_genomes_project 7 34201812 34221194 - Wtip protein_coding processed_transcript MGP_C3HHeJ_T0082806.1 MGP_C3HHeJ_G0031775.1 mouse_genomes_project 7 34201863 34210710 - Wtip protein_coding retained_intron MGP_C3HHeJ_T0082807.1 MGP_C3HHeJ_G0031775.1 mouse_genomes_project 7 34201873 34225799 - MGP_C3HHeJ_P0082807 Wtip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082618.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29964417 29984286 - MGP_C3HHeJ_P0082618 Kmt2b protein_coding protein_coding MGP_C3HHeJ_T0082619.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29964417 29984277 - MGP_C3HHeJ_P0082619 Kmt2b protein_coding protein_coding MGP_C3HHeJ_T0082620.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29964419 29980900 - MGP_C3HHeJ_P0082620 Kmt2b protein_coding protein_coding MGP_C3HHeJ_T0082621.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29965312 29966224 - Kmt2b protein_coding retained_intron MGP_C3HHeJ_T0082622.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29968728 29969734 - Kmt2b protein_coding retained_intron MGP_C3HHeJ_T0082623.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29971132 29972724 - Kmt2b protein_coding processed_transcript MGP_C3HHeJ_T0082624.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29972589 29974554 - Kmt2b protein_coding processed_transcript MGP_C3HHeJ_T0082625.1 MGP_C3HHeJ_G0031734.1 mouse_genomes_project 7 29979840 29980634 - Kmt2b protein_coding processed_transcript MGP_C3HHeJ_T0002222.1 MGP_C3HHeJ_G0002142.1 mouse_genomes_project 7 77701587 77702983 + TEC TEC MGP_C3HHeJ_T0080828.1 MGP_C3HHeJ_G0031224.1 mouse_genomes_project 7 492779 499113 - MGP_C3HHeJ_P0080828 Oscar protein_coding protein_coding MGP_C3HHeJ_T0080829.1 MGP_C3HHeJ_G0031224.1 mouse_genomes_project 7 492779 499137 - MGP_C3HHeJ_P0080829 Oscar protein_coding protein_coding MGP_C3HHeJ_T0080830.1 MGP_C3HHeJ_G0031224.1 mouse_genomes_project 7 492779 499137 - MGP_C3HHeJ_P0080830 Oscar protein_coding protein_coding MGP_C3HHeJ_T0080831.1 MGP_C3HHeJ_G0031224.1 mouse_genomes_project 7 494137 499065 - Oscar protein_coding processed_transcript MGP_C3HHeJ_T0086138.1 MGP_C3HHeJ_G0032691.1 mouse_genomes_project 7 130684252 130685539 + Bola2 protein_coding retained_intron MGP_C3HHeJ_T0086139.1 MGP_C3HHeJ_G0032691.1 mouse_genomes_project 7 130684287 130685910 + MGP_C3HHeJ_P0086139 Bola2 protein_coding protein_coding MGP_C3HHeJ_T0086140.1 MGP_C3HHeJ_G0032691.1 mouse_genomes_project 7 130684817 130685545 + Bola2 protein_coding processed_transcript MGP_C3HHeJ_T0086141.1 MGP_C3HHeJ_G0032691.1 mouse_genomes_project 7 130684824 130685549 + MGP_C3HHeJ_P0086141 Bola2 protein_coding protein_coding MGP_C3HHeJ_T0086142.1 MGP_C3HHeJ_G0032691.1 mouse_genomes_project 7 130684854 130688632 + Bola2 protein_coding retained_intron MGP_C3HHeJ_T0085084.1 MGP_C3HHeJ_G0032352.1 mouse_genomes_project 7 106588152 106589100 + MGP_C3HHeJ_P0085084 Olfr599 protein_coding protein_coding MGP_C3HHeJ_T0084595.1 MGP_C3HHeJ_G0032216.1 mouse_genomes_project 7 95645880 95708069 + MGP_C3HHeJ_P0084595 Prcp protein_coding protein_coding MGP_C3HHeJ_T0083123.1 MGP_C3HHeJ_G0031856.1 mouse_genomes_project 7 44992783 45248475 + protein_coding retained_intron MGP_C3HHeJ_T0083124.1 MGP_C3HHeJ_G0031856.1 mouse_genomes_project 7 44992788 45248852 + MGP_C3HHeJ_P0083124 protein_coding protein_coding MGP_C3HHeJ_T0002286.1 MGP_C3HHeJ_G0002206.1 mouse_genomes_project 7 149638335 149639679 + TEC TEC MGP_C3HHeJ_T0100839.1 MGP_C3HHeJ_G0039033.1 mouse_genomes_project 7 84496428 84496553 + Gm25907 snoRNA snoRNA MGP_C3HHeJ_T0083351.1 MGP_C3HHeJ_G0031913.1 mouse_genomes_project 7 46274843 46278079 - MGP_C3HHeJ_P0083351 Gfy protein_coding protein_coding MGP_C3HHeJ_T0005088.1 MGP_C3HHeJ_G0004326.1 mouse_genomes_project 7 18111861 18118606 + Gm20512 antisense antisense MGP_C3HHeJ_T0082051.1 MGP_C3HHeJ_G0031600.1 mouse_genomes_project 7 26044276 26053002 + Cyp2a12 protein_coding retained_intron MGP_C3HHeJ_T0082052.1 MGP_C3HHeJ_G0031600.1 mouse_genomes_project 7 26044285 26052459 + MGP_C3HHeJ_P0082052 Cyp2a12 protein_coding protein_coding MGP_C3HHeJ_T0102258.1 MGP_C3HHeJ_G0040221.1 mouse_genomes_project 7 49687006 49688869 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082123.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26430942 26469095 - MGP_C3HHeJ_P0082123 Sptbn4 protein_coding protein_coding MGP_C3HHeJ_T0082124.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26430942 26471119 - MGP_C3HHeJ_P0082124 Sptbn4 protein_coding protein_coding MGP_C3HHeJ_T0082125.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26430942 26470798 - MGP_C3HHeJ_P0082125 Sptbn4 protein_coding protein_coding MGP_C3HHeJ_T0082126.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26430942 26525797 - MGP_C3HHeJ_P0082126 Sptbn4 protein_coding protein_coding MGP_C3HHeJ_T0082127.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26430946 26526884 - MGP_C3HHeJ_P0082127 Sptbn4 protein_coding protein_coding MGP_C3HHeJ_T0082128.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26511014 26526884 - MGP_C3HHeJ_P0082128 Sptbn4 protein_coding protein_coding MGP_C3HHeJ_T0082129.1 MGP_C3HHeJ_G0031616.1 mouse_genomes_project 7 26525151 26525715 - Sptbn4 protein_coding processed_transcript MGP_C3HHeJ_T0087480.1 MGP_C3HHeJ_G0032982.1 mouse_genomes_project 7 148705313 148711235 + Gm498 protein_coding processed_transcript MGP_C3HHeJ_T0087481.1 MGP_C3HHeJ_G0032982.1 mouse_genomes_project 7 148707615 148745193 + MGP_C3HHeJ_P0087481 Gm498 protein_coding protein_coding MGP_C3HHeJ_T0087482.1 MGP_C3HHeJ_G0032982.1 mouse_genomes_project 7 148707621 148746203 + MGP_C3HHeJ_P0087482 Gm498 protein_coding protein_coding MGP_C3HHeJ_T0083548.1 MGP_C3HHeJ_G0031961.1 mouse_genomes_project 7 47072674 47075465 - MGP_C3HHeJ_P0083548 Emp3 protein_coding protein_coding MGP_C3HHeJ_T0083549.1 MGP_C3HHeJ_G0031961.1 mouse_genomes_project 7 47072674 47076042 - MGP_C3HHeJ_P0083549 Emp3 protein_coding protein_coding MGP_C3HHeJ_T0082791.1 MGP_C3HHeJ_G0031766.1 mouse_genomes_project 7 30733215 30734518 - MGP_C3HHeJ_P0082791 Scgb1b2 protein_coding protein_coding MGP_C3HHeJ_T0015566.1 MGP_C3HHeJ_G0013670.1 mouse_genomes_project 7 33554468 33554925 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010783.1 MGP_C3HHeJ_G0008916.1 mouse_genomes_project 7 55470131 55470260 - Mir6238 miRNA miRNA MGP_C3HHeJ_T0100870.1 MGP_C3HHeJ_G0039064.1 mouse_genomes_project 7 148328699 148328826 - Gm23297 snoRNA snoRNA MGP_C3HHeJ_T0099592.1 MGP_C3HHeJ_G0037786.1 mouse_genomes_project 7 94404662 94404807 - Gm23928 snRNA snRNA MGP_C3HHeJ_T0083925.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68155064 68193865 - Lrrk1 protein_coding processed_transcript MGP_C3HHeJ_T0083926.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68190074 68316435 - MGP_C3HHeJ_P0083926 Lrrk1 protein_coding protein_coding MGP_C3HHeJ_T0083927.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68190081 68196904 - Lrrk1 protein_coding retained_intron MGP_C3HHeJ_T0083928.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68190512 68215737 - MGP_C3HHeJ_P0083928 Lrrk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083929.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68197522 68201137 - Lrrk1 protein_coding retained_intron MGP_C3HHeJ_T0083930.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68269765 68271547 - Lrrk1 protein_coding processed_transcript MGP_C3HHeJ_T0083931.1 MGP_C3HHeJ_G0032054.1 mouse_genomes_project 7 68269934 68316392 - Lrrk1 protein_coding retained_intron MGP_C3HHeJ_T0082022.1 MGP_C3HHeJ_G0031587.1 mouse_genomes_project 7 24861038 25037810 + MGP_C3HHeJ_P0082022 protein_coding protein_coding MGP_C3HHeJ_T0102237.1 MGP_C3HHeJ_G0040200.1 mouse_genomes_project 7 45060153 45060370 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015734.1 MGP_C3HHeJ_G0013838.1 mouse_genomes_project 7 144356196 144358187 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082049.1 MGP_C3HHeJ_G0031599.1 mouse_genomes_project 7 25942423 25950776 - Cyp2a22 protein_coding retained_intron MGP_C3HHeJ_T0082050.1 MGP_C3HHeJ_G0031599.1 mouse_genomes_project 7 25942847 25950772 - MGP_C3HHeJ_P0082050 Cyp2a22 protein_coding protein_coding MGP_C3HHeJ_T0008917.1 MGP_C3HHeJ_G0007175.1 mouse_genomes_project 7 120169603 120171703 + Gm45151 lincRNA lincRNA MGP_C3HHeJ_T0084563.1 MGP_C3HHeJ_G0032208.1 mouse_genomes_project 7 93144636 93151993 - MGP_C3HHeJ_P0084563 Tmem126a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084564.1 MGP_C3HHeJ_G0032208.1 mouse_genomes_project 7 93144641 93152014 - MGP_C3HHeJ_P0084564 Tmem126a protein_coding protein_coding MGP_C3HHeJ_T0084565.1 MGP_C3HHeJ_G0032208.1 mouse_genomes_project 7 93149989 93151993 - Tmem126a protein_coding retained_intron MGP_C3HHeJ_T0085801.1 MGP_C3HHeJ_G0032623.1 mouse_genomes_project 7 123936409 123946306 + MGP_C3HHeJ_P0085801 Anks4b protein_coding protein_coding MGP_C3HHeJ_T0084857.1 MGP_C3HHeJ_G0032277.1 mouse_genomes_project 7 103936245 103957282 - MGP_C3HHeJ_P0084857 Relt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084858.1 MGP_C3HHeJ_G0032277.1 mouse_genomes_project 7 103940298 103946195 - MGP_C3HHeJ_P0084858 Relt protein_coding protein_coding MGP_C3HHeJ_T0084859.1 MGP_C3HHeJ_G0032277.1 mouse_genomes_project 7 103944179 103949280 - MGP_C3HHeJ_P0084859 Relt protein_coding protein_coding MGP_C3HHeJ_T0084860.1 MGP_C3HHeJ_G0032277.1 mouse_genomes_project 7 103944179 103950154 - MGP_C3HHeJ_P0084860 Relt protein_coding protein_coding MGP_C3HHeJ_T0084861.1 MGP_C3HHeJ_G0032277.1 mouse_genomes_project 7 103944189 103957034 - MGP_C3HHeJ_P0084861 Relt protein_coding protein_coding MGP_C3HHeJ_T0084862.1 MGP_C3HHeJ_G0032277.1 mouse_genomes_project 7 103946136 103957274 - MGP_C3HHeJ_P0084862 Relt protein_coding protein_coding MGP_C3HHeJ_T0081604.1 MGP_C3HHeJ_G0031473.1 mouse_genomes_project 7 17676357 17683679 - MGP_C3HHeJ_P0081604 Fosb protein_coding protein_coding MGP_C3HHeJ_T0010758.1 MGP_C3HHeJ_G0008891.1 mouse_genomes_project 7 23901311 23901421 - Mir6537 miRNA miRNA MGP_C3HHeJ_T0099610.1 MGP_C3HHeJ_G0037804.1 mouse_genomes_project 7 127841646 127841752 - Gm23788 snRNA snRNA MGP_C3HHeJ_T0099572.1 MGP_C3HHeJ_G0037766.1 mouse_genomes_project 7 40099138 40099249 + Gm26327 snRNA snRNA MGP_C3HHeJ_T0018111.1 MGP_C3HHeJ_G0015419.1 mouse_genomes_project 7 26747824 26750015 - Gm44685 processed_transcript processed_transcript MGP_C3HHeJ_T0085378.1 MGP_C3HHeJ_G0032519.1 mouse_genomes_project 7 111853294 111854287 + MGP_C3HHeJ_P0085378 Olfr498 protein_coding protein_coding MGP_C3HHeJ_T0100831.1 MGP_C3HHeJ_G0039025.1 mouse_genomes_project 7 61192491 61192570 - snoRNA snoRNA MGP_C3HHeJ_T0082101.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26374758 26408771 - MGP_C3HHeJ_P0082101 protein_coding protein_coding MGP_C3HHeJ_T0082102.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26374762 26404737 - MGP_C3HHeJ_P0082102 protein_coding protein_coding MGP_C3HHeJ_T0082103.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26374764 26408771 - MGP_C3HHeJ_P0082103 protein_coding protein_coding MGP_C3HHeJ_T0082104.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26375620 26404687 - MGP_C3HHeJ_P0082104 protein_coding protein_coding MGP_C3HHeJ_T0082105.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26375701 26376593 - protein_coding retained_intron MGP_C3HHeJ_T0082106.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26376245 26380208 - MGP_C3HHeJ_P0082106 protein_coding protein_coding MGP_C3HHeJ_T0082107.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26377182 26380227 - protein_coding retained_intron MGP_C3HHeJ_T0082108.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26378593 26380011 - protein_coding retained_intron MGP_C3HHeJ_T0082109.1 MGP_C3HHeJ_G0031612.1 mouse_genomes_project 7 26381108 26404722 - protein_coding processed_transcript MGP_C3HHeJ_T0084518.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91831641 92036911 - MGP_C3HHeJ_P0084518 Tmem135 protein_coding protein_coding MGP_C3HHeJ_T0084519.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91833774 91847636 - Tmem135 protein_coding retained_intron MGP_C3HHeJ_T0084520.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91837979 92036884 - MGP_C3HHeJ_P0084520 Tmem135 protein_coding protein_coding MGP_C3HHeJ_T0084521.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91847462 91852964 - Tmem135 protein_coding processed_transcript MGP_C3HHeJ_T0084522.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91849794 92102601 - Tmem135 protein_coding processed_transcript MGP_C3HHeJ_T0084523.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91852324 91992738 - Tmem135 protein_coding processed_transcript MGP_C3HHeJ_T0084524.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 91999634 92036815 - Tmem135 protein_coding retained_intron MGP_C3HHeJ_T0084525.1 MGP_C3HHeJ_G0032194.1 mouse_genomes_project 7 92000614 92036861 - MGP_C3HHeJ_P0084525 Tmem135 protein_coding protein_coding MGP_C3HHeJ_T0099618.1 MGP_C3HHeJ_G0037812.1 mouse_genomes_project 7 142623504 142623611 - Gm25798 snRNA snRNA MGP_C3HHeJ_T0008741.1 MGP_C3HHeJ_G0007053.1 mouse_genomes_project 7 29204801 29210730 + Gm26554 lincRNA lincRNA MGP_C3HHeJ_T0082995.1 MGP_C3HHeJ_G0031809.1 mouse_genomes_project 7 41397709 41431024 + MGP_C3HHeJ_P0082995 Vstm2b protein_coding protein_coding MGP_C3HHeJ_T0082996.1 MGP_C3HHeJ_G0031809.1 mouse_genomes_project 7 41398659 41430398 + MGP_C3HHeJ_P0082996 Vstm2b protein_coding protein_coding MGP_C3HHeJ_T0082997.1 MGP_C3HHeJ_G0031809.1 mouse_genomes_project 7 41398713 41402170 + MGP_C3HHeJ_P0082997 Vstm2b protein_coding protein_coding MGP_C3HHeJ_T0082998.1 MGP_C3HHeJ_G0031809.1 mouse_genomes_project 7 41399510 41402183 + MGP_C3HHeJ_P0082998 Vstm2b protein_coding protein_coding MGP_C3HHeJ_T0081069.1 MGP_C3HHeJ_G0031268.1 mouse_genomes_project 7 1814941 1826650 - MGP_C3HHeJ_P0081069 Shisa7 protein_coding protein_coding MGP_C3HHeJ_T0081070.1 MGP_C3HHeJ_G0031268.1 mouse_genomes_project 7 1814942 1837647 - MGP_C3HHeJ_P0081070 Shisa7 protein_coding protein_coding MGP_C3HHeJ_T0081071.1 MGP_C3HHeJ_G0031268.1 mouse_genomes_project 7 1817417 1837647 - MGP_C3HHeJ_P0081071 Shisa7 protein_coding protein_coding MGP_C3HHeJ_T0081072.1 MGP_C3HHeJ_G0031268.1 mouse_genomes_project 7 1819567 1820560 - Shisa7 protein_coding retained_intron MGP_C3HHeJ_T0081073.1 MGP_C3HHeJ_G0031268.1 mouse_genomes_project 7 1820823 1824991 - Shisa7 protein_coding retained_intron MGP_C3HHeJ_T0081076.1 MGP_C3HHeJ_G0031271.1 mouse_genomes_project 7 1927677 1934492 + MGP_C3HHeJ_P0081076 protein_coding protein_coding MGP_C3HHeJ_T0082912.1 MGP_C3HHeJ_G0031794.1 mouse_genomes_project 7 35640984 35711728 - MGP_C3HHeJ_P0082912 protein_coding protein_coding MGP_C3HHeJ_T0082913.1 MGP_C3HHeJ_G0031794.1 mouse_genomes_project 7 35643078 35711729 - MGP_C3HHeJ_P0082913 protein_coding protein_coding MGP_C3HHeJ_T0082914.1 MGP_C3HHeJ_G0031794.1 mouse_genomes_project 7 35665466 35711884 - MGP_C3HHeJ_P0082914 protein_coding protein_coding MGP_C3HHeJ_T0082915.1 MGP_C3HHeJ_G0031794.1 mouse_genomes_project 7 35665469 35711936 - MGP_C3HHeJ_P0082915 protein_coding protein_coding MGP_C3HHeJ_T0082916.1 MGP_C3HHeJ_G0031794.1 mouse_genomes_project 7 35665498 35676866 - MGP_C3HHeJ_P0082916 protein_coding protein_coding MGP_C3HHeJ_T0082917.1 MGP_C3HHeJ_G0031794.1 mouse_genomes_project 7 35680633 35711884 - MGP_C3HHeJ_P0082917 protein_coding protein_coding MGP_C3HHeJ_T0100855.1 MGP_C3HHeJ_G0039049.1 mouse_genomes_project 7 114547434 114547602 - Gm23262 snoRNA snoRNA MGP_C3HHeJ_T0102243.1 MGP_C3HHeJ_G0040206.1 mouse_genomes_project 7 48811385 48840612 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010792.1 MGP_C3HHeJ_G0008925.1 mouse_genomes_project 7 63425558 63425627 - Gm22466 miRNA miRNA MGP_C3HHeJ_T0099612.1 MGP_C3HHeJ_G0037806.1 mouse_genomes_project 7 130539141 130539247 - Gm25579 snRNA snRNA MGP_C3HHeJ_T0008745.1 MGP_C3HHeJ_G0007057.1 mouse_genomes_project 7 34320650 34325972 + Gm26762 lincRNA lincRNA MGP_C3HHeJ_T0010756.1 MGP_C3HHeJ_G0008889.1 mouse_genomes_project 7 23763935 23764001 - Mir7046 miRNA miRNA MGP_C3HHeJ_T0083559.1 MGP_C3HHeJ_G0031964.1 mouse_genomes_project 7 47212989 47267841 + MGP_C3HHeJ_P0083559 Nomo1 protein_coding protein_coding MGP_C3HHeJ_T0083560.1 MGP_C3HHeJ_G0031964.1 mouse_genomes_project 7 47230739 47231512 + Nomo1 protein_coding retained_intron MGP_C3HHeJ_T0083561.1 MGP_C3HHeJ_G0031964.1 mouse_genomes_project 7 47234169 47237211 + Nomo1 protein_coding retained_intron MGP_C3HHeJ_T0083562.1 MGP_C3HHeJ_G0031964.1 mouse_genomes_project 7 47238486 47241091 + Nomo1 protein_coding retained_intron MGP_C3HHeJ_T0083563.1 MGP_C3HHeJ_G0031964.1 mouse_genomes_project 7 47266272 47267432 + Nomo1 protein_coding retained_intron MGP_C3HHeJ_T0081119.1 MGP_C3HHeJ_G0031295.1 mouse_genomes_project 7 3047704 3050966 - MGP_C3HHeJ_P0081119 Vmn1r65 protein_coding protein_coding MGP_C3HHeJ_T0086717.1 MGP_C3HHeJ_G0032793.1 mouse_genomes_project 7 135159385 135204080 + Htra1 protein_coding retained_intron MGP_C3HHeJ_T0086718.1 MGP_C3HHeJ_G0032793.1 mouse_genomes_project 7 135159477 135209808 + MGP_C3HHeJ_P0086718 Htra1 protein_coding protein_coding MGP_C3HHeJ_T0086719.1 MGP_C3HHeJ_G0032793.1 mouse_genomes_project 7 135166793 135209808 + Htra1 protein_coding processed_transcript MGP_C3HHeJ_T0086720.1 MGP_C3HHeJ_G0032793.1 mouse_genomes_project 7 135205817 135206591 + Htra1 protein_coding retained_intron MGP_C3HHeJ_T0086721.1 MGP_C3HHeJ_G0032793.1 mouse_genomes_project 7 135206877 135209544 + Htra1 protein_coding processed_transcript MGP_C3HHeJ_T0086514.1 MGP_C3HHeJ_G0032760.1 mouse_genomes_project 7 131969509 131972059 - MGP_C3HHeJ_P0086514 Vkorc1 protein_coding protein_coding MGP_C3HHeJ_T0086515.1 MGP_C3HHeJ_G0032760.1 mouse_genomes_project 7 131969511 131971693 - MGP_C3HHeJ_P0086515 Vkorc1 protein_coding protein_coding MGP_C3HHeJ_T0086516.1 MGP_C3HHeJ_G0032760.1 mouse_genomes_project 7 131969684 131971751 - MGP_C3HHeJ_P0086516 Vkorc1 protein_coding protein_coding MGP_C3HHeJ_T0081219.1 MGP_C3HHeJ_G0031352.1 mouse_genomes_project 7 10362783 10376649 - MGP_C3HHeJ_P0081219 Zfp329 protein_coding protein_coding MGP_C3HHeJ_T0081220.1 MGP_C3HHeJ_G0031352.1 mouse_genomes_project 7 10362788 10376653 - MGP_C3HHeJ_P0081220 Zfp329 protein_coding protein_coding MGP_C3HHeJ_T0081221.1 MGP_C3HHeJ_G0031352.1 mouse_genomes_project 7 10363877 10365869 - Zfp329 protein_coding processed_transcript MGP_C3HHeJ_T0081222.1 MGP_C3HHeJ_G0031352.1 mouse_genomes_project 7 10363894 10376647 - MGP_C3HHeJ_P0081222 Zfp329 protein_coding protein_coding MGP_C3HHeJ_T0083014.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42336442 42356325 + MGP_C3HHeJ_P0083014 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0083015.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42336770 42359655 + MGP_C3HHeJ_P0083015 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0083016.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42336795 42357135 + MGP_C3HHeJ_P0083016 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0083017.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42336797 42357774 + MGP_C3HHeJ_P0083017 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0083018.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42336803 42359708 + MGP_C3HHeJ_P0083018 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0083019.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42336816 42360302 + MGP_C3HHeJ_P0083019 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0083020.1 MGP_C3HHeJ_G0031817.1 mouse_genomes_project 7 42356360 42359373 + MGP_C3HHeJ_P0083020 Zfp788 protein_coding protein_coding MGP_C3HHeJ_T0005080.1 MGP_C3HHeJ_G0004322.1 mouse_genomes_project 7 16253709 16371036 - antisense antisense MGP_C3HHeJ_T0005081.1 MGP_C3HHeJ_G0004322.1 mouse_genomes_project 7 16257065 16371080 - antisense antisense MGP_C3HHeJ_T0015550.1 MGP_C3HHeJ_G0013654.1 mouse_genomes_project 7 25187297 25188628 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087003.1 MGP_C3HHeJ_G0032871.1 mouse_genomes_project 7 144937464 144938442 + MGP_C3HHeJ_P0087003 Olfr527 protein_coding protein_coding MGP_C3HHeJ_T0099562.1 MGP_C3HHeJ_G0037756.1 mouse_genomes_project 7 14175625 14175748 - Gm26473 snRNA snRNA MGP_C3HHeJ_T0015712.1 MGP_C3HHeJ_G0013816.1 mouse_genomes_project 7 129471892 129473226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083318.1 MGP_C3HHeJ_G0031899.1 mouse_genomes_project 7 46093794 46098901 + MGP_C3HHeJ_P0083318 Irf3 protein_coding protein_coding MGP_C3HHeJ_T0083319.1 MGP_C3HHeJ_G0031899.1 mouse_genomes_project 7 46094094 46098445 + MGP_C3HHeJ_P0083319 Irf3 protein_coding protein_coding MGP_C3HHeJ_T0005069.1 MGP_C3HHeJ_G0004316.1 mouse_genomes_project 7 1080412 1093430 - D030047H15Rik antisense antisense MGP_C3HHeJ_T0085055.1 MGP_C3HHeJ_G0032326.1 mouse_genomes_project 7 105952258 105954213 - MGP_C3HHeJ_P0085055 Olfr559 protein_coding protein_coding MGP_C3HHeJ_T0086998.1 MGP_C3HHeJ_G0032868.1 mouse_genomes_project 7 144819384 144832095 + MGP_C3HHeJ_P0086998 Cd163l1 protein_coding protein_coding MGP_C3HHeJ_T0085564.1 MGP_C3HHeJ_G0032573.1 mouse_genomes_project 7 116950166 116953162 - MGP_C3HHeJ_P0085564 Pth protein_coding protein_coding MGP_C3HHeJ_T0085333.1 MGP_C3HHeJ_G0032481.1 mouse_genomes_project 7 110317027 110321043 - MGP_C3HHeJ_P0085333 Olfr711 protein_coding protein_coding MGP_C3HHeJ_T0015666.1 MGP_C3HHeJ_G0013770.1 mouse_genomes_project 7 97266420 97266552 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082174.1 MGP_C3HHeJ_G0031625.1 mouse_genomes_project 7 26752877 26756309 + MGP_C3HHeJ_P0082174 Ttc9b protein_coding protein_coding MGP_C3HHeJ_T0083520.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46958384 46966056 - MGP_C3HHeJ_P0083520 Cyth2 protein_coding protein_coding MGP_C3HHeJ_T0083521.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46959387 46966042 - MGP_C3HHeJ_P0083521 Cyth2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083522.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46959397 46966022 - MGP_C3HHeJ_P0083522 Cyth2 protein_coding protein_coding MGP_C3HHeJ_T0083523.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46959509 46965856 - MGP_C3HHeJ_P0083523 Cyth2 protein_coding protein_coding MGP_C3HHeJ_T0083524.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46961793 46966012 - Cyth2 protein_coding processed_transcript MGP_C3HHeJ_T0083525.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46962594 46966321 - MGP_C3HHeJ_P0083525 Cyth2 protein_coding protein_coding MGP_C3HHeJ_T0083526.1 MGP_C3HHeJ_G0031954.1 mouse_genomes_project 7 46963263 46966001 - Cyth2 protein_coding processed_transcript MGP_C3HHeJ_T0086927.1 MGP_C3HHeJ_G0032848.1 mouse_genomes_project 7 144142099 144145520 - MGP_C3HHeJ_P0086927 Nkx6-2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086928.1 MGP_C3HHeJ_G0032848.1 mouse_genomes_project 7 144143942 144145513 - MGP_C3HHeJ_P0086928 Nkx6-2 protein_coding protein_coding MGP_C3HHeJ_T0081590.1 MGP_C3HHeJ_G0031468.1 mouse_genomes_project 7 17580429 17592496 + MGP_C3HHeJ_P0081590 Gpr4 protein_coding protein_coding MGP_C3HHeJ_T0010806.1 MGP_C3HHeJ_G0008939.1 mouse_genomes_project 7 66077188 66077294 + Mir211 miRNA miRNA MGP_C3HHeJ_T0005145.1 MGP_C3HHeJ_G0004370.1 mouse_genomes_project 7 52003495 52066241 - Nell1os antisense antisense MGP_C3HHeJ_T0005146.1 MGP_C3HHeJ_G0004370.1 mouse_genomes_project 7 52032979 52066328 - Nell1os antisense antisense MGP_C3HHeJ_T0005147.1 MGP_C3HHeJ_G0004370.1 mouse_genomes_project 7 52052649 52063652 - Nell1os antisense antisense MGP_C3HHeJ_T0099586.1 MGP_C3HHeJ_G0037780.1 mouse_genomes_project 7 80206006 80206187 - Gm23239 snRNA snRNA MGP_C3HHeJ_T0084097.1 MGP_C3HHeJ_G0032086.1 mouse_genomes_project 7 81263013 81269824 + MGP_C3HHeJ_P0084097 Isg20 protein_coding protein_coding MGP_C3HHeJ_T0084098.1 MGP_C3HHeJ_G0032086.1 mouse_genomes_project 7 81263047 81269914 + MGP_C3HHeJ_P0084098 Isg20 protein_coding protein_coding MGP_C3HHeJ_T0084099.1 MGP_C3HHeJ_G0032086.1 mouse_genomes_project 7 81263354 81269997 + MGP_C3HHeJ_P0084099 Isg20 protein_coding protein_coding MGP_C3HHeJ_T0084100.1 MGP_C3HHeJ_G0032086.1 mouse_genomes_project 7 81263570 81266625 + Isg20 protein_coding retained_intron MGP_C3HHeJ_T0084101.1 MGP_C3HHeJ_G0032086.1 mouse_genomes_project 7 81263824 81269953 + MGP_C3HHeJ_P0084101 Isg20 protein_coding protein_coding MGP_C3HHeJ_T0084102.1 MGP_C3HHeJ_G0032086.1 mouse_genomes_project 7 81263918 81269794 + MGP_C3HHeJ_P0084102 Isg20 protein_coding protein_coding MGP_C3HHeJ_T0100861.1 MGP_C3HHeJ_G0039055.1 mouse_genomes_project 7 123028427 123028553 - Gm23321 snoRNA snoRNA MGP_C3HHeJ_T0083770.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57644296 57661422 + MGP_C3HHeJ_P0083770 Herc2 protein_coding protein_coding MGP_C3HHeJ_T0083771.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57644353 57831373 + MGP_C3HHeJ_P0083771 Herc2 protein_coding protein_coding MGP_C3HHeJ_T0083772.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57644489 57831336 + MGP_C3HHeJ_P0083772 Herc2 protein_coding protein_coding MGP_C3HHeJ_T0083773.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57644866 57707935 + MGP_C3HHeJ_P0083773 Herc2 protein_coding protein_coding MGP_C3HHeJ_T0083774.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57644978 57830705 + MGP_C3HHeJ_P0083774 Herc2 protein_coding protein_coding MGP_C3HHeJ_T0083775.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57645048 57666370 + Herc2 protein_coding retained_intron MGP_C3HHeJ_T0083776.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57755296 57760259 + Herc2 protein_coding processed_transcript MGP_C3HHeJ_T0083777.1 MGP_C3HHeJ_G0032020.1 mouse_genomes_project 7 57820076 57830674 + MGP_C3HHeJ_P0083777 Herc2 protein_coding protein_coding MGP_C3HHeJ_T0080911.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073154 1079661 + Ttyh1 protein_coding processed_transcript MGP_C3HHeJ_T0080912.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073276 1090108 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0080913.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073276 1090506 + MGP_C3HHeJ_P0080913 Ttyh1 protein_coding protein_coding MGP_C3HHeJ_T0080914.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073279 1093212 + MGP_C3HHeJ_P0080914 Ttyh1 protein_coding protein_coding MGP_C3HHeJ_T0080915.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073302 1079692 + Ttyh1 protein_coding processed_transcript MGP_C3HHeJ_T0080916.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073331 1090492 + MGP_C3HHeJ_P0080916 Ttyh1 protein_coding protein_coding MGP_C3HHeJ_T0080917.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073334 1079701 + MGP_C3HHeJ_P0080917 Ttyh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080918.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073368 1082338 + MGP_C3HHeJ_P0080918 Ttyh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080919.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073500 1090489 + MGP_C3HHeJ_P0080919 Ttyh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080920.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1073966 1079633 + Ttyh1 protein_coding processed_transcript MGP_C3HHeJ_T0080921.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1076221 1090566 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0080922.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1078561 1089398 + MGP_C3HHeJ_P0080922 Ttyh1 protein_coding protein_coding MGP_C3HHeJ_T0080923.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1079739 1088578 + Ttyh1 protein_coding processed_transcript MGP_C3HHeJ_T0080924.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1082298 1084192 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0080925.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1083318 1088356 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0080926.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1084691 1087049 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0080927.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1085209 1087193 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0080928.1 MGP_C3HHeJ_G0031240.1 mouse_genomes_project 7 1088188 1089131 + Ttyh1 protein_coding retained_intron MGP_C3HHeJ_T0099620.1 MGP_C3HHeJ_G0037814.1 mouse_genomes_project 7 145761669 145761778 - Gm24962 snRNA snRNA MGP_C3HHeJ_T0102225.1 MGP_C3HHeJ_G0040188.1 mouse_genomes_project 7 43103326 43103568 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082389.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28595486 28608945 + MGP_C3HHeJ_P0082389 Dpf1 protein_coding protein_coding MGP_C3HHeJ_T0082390.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28595511 28609257 + MGP_C3HHeJ_P0082390 Dpf1 protein_coding protein_coding MGP_C3HHeJ_T0082391.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28599477 28608577 + MGP_C3HHeJ_P0082391 Dpf1 protein_coding protein_coding MGP_C3HHeJ_T0082392.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28599565 28608569 + Dpf1 protein_coding retained_intron MGP_C3HHeJ_T0082393.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28599565 28608584 + MGP_C3HHeJ_P0082393 Dpf1 protein_coding protein_coding MGP_C3HHeJ_T0082394.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28599571 28609253 + Dpf1 protein_coding processed_transcript MGP_C3HHeJ_T0082395.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28601066 28604896 + MGP_C3HHeJ_P0082395 Dpf1 protein_coding protein_coding MGP_C3HHeJ_T0082396.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28601159 28603299 + Dpf1 protein_coding processed_transcript MGP_C3HHeJ_T0082397.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28604615 28607418 + MGP_C3HHeJ_P0082397 Dpf1 protein_coding protein_coding MGP_C3HHeJ_T0082398.1 MGP_C3HHeJ_G0031686.1 mouse_genomes_project 7 28605823 28608244 + Dpf1 protein_coding retained_intron MGP_C3HHeJ_T0085370.1 MGP_C3HHeJ_G0032511.1 mouse_genomes_project 7 111601820 111602874 - MGP_C3HHeJ_P0085370 protein_coding protein_coding MGP_C3HHeJ_T0005566.1 MGP_C3HHeJ_G0004677.1 mouse_genomes_project 7 82319199 82320998 + 5430400D12Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0015581.1 MGP_C3HHeJ_G0013685.1 mouse_genomes_project 7 40208742 40209285 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081952.1 MGP_C3HHeJ_G0031571.1 mouse_genomes_project 7 24230915 24244313 - MGP_C3HHeJ_P0081952 Cxcl17 protein_coding protein_coding MGP_C3HHeJ_T0081953.1 MGP_C3HHeJ_G0031571.1 mouse_genomes_project 7 24230915 24244313 - MGP_C3HHeJ_P0081953 Cxcl17 protein_coding protein_coding MGP_C3HHeJ_T0083023.1 MGP_C3HHeJ_G0031820.1 mouse_genomes_project 7 42896104 42973077 + MGP_C3HHeJ_P0083023 Vmn2r60 protein_coding protein_coding MGP_C3HHeJ_T0086617.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132561596 132589268 - MGP_C3HHeJ_P0086617 Tial1 protein_coding protein_coding MGP_C3HHeJ_T0086618.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132562044 132589248 - Tial1 protein_coding retained_intron MGP_C3HHeJ_T0086619.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132563227 132589269 - MGP_C3HHeJ_P0086619 Tial1 protein_coding protein_coding MGP_C3HHeJ_T0086620.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132563619 132588919 - MGP_C3HHeJ_P0086620 Tial1 protein_coding protein_coding MGP_C3HHeJ_T0086621.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132564033 132566730 - MGP_C3HHeJ_P0086621 Tial1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086622.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132564104 132589313 - MGP_C3HHeJ_P0086622 Tial1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086623.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132564104 132588805 - MGP_C3HHeJ_P0086623 Tial1 protein_coding protein_coding MGP_C3HHeJ_T0086624.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132564104 132588951 - MGP_C3HHeJ_P0086624 Tial1 protein_coding protein_coding MGP_C3HHeJ_T0086625.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132564135 132588942 - MGP_C3HHeJ_P0086625 Tial1 protein_coding protein_coding MGP_C3HHeJ_T0086626.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132565638 132575961 - MGP_C3HHeJ_P0086626 Tial1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086627.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132566113 132567530 - Tial1 protein_coding retained_intron MGP_C3HHeJ_T0086628.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132566636 132582635 - MGP_C3HHeJ_P0086628 Tial1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086629.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132568587 132576185 - Tial1 protein_coding retained_intron MGP_C3HHeJ_T0086630.1 MGP_C3HHeJ_G0032780.1 mouse_genomes_project 7 132575462 132576493 - Tial1 protein_coding retained_intron MGP_C3HHeJ_T0085140.1 MGP_C3HHeJ_G0032404.1 mouse_genomes_project 7 107516577 107526589 + Trim6 protein_coding retained_intron MGP_C3HHeJ_T0085141.1 MGP_C3HHeJ_G0032404.1 mouse_genomes_project 7 107516579 107532861 + MGP_C3HHeJ_P0085141 Trim6 protein_coding protein_coding MGP_C3HHeJ_T0085142.1 MGP_C3HHeJ_G0032404.1 mouse_genomes_project 7 107516621 107524984 + MGP_C3HHeJ_P0085142 Trim6 protein_coding protein_coding MGP_C3HHeJ_T0085143.1 MGP_C3HHeJ_G0032404.1 mouse_genomes_project 7 107517213 107525021 + MGP_C3HHeJ_P0085143 Trim6 protein_coding protein_coding MGP_C3HHeJ_T0085144.1 MGP_C3HHeJ_G0032404.1 mouse_genomes_project 7 107518946 107525886 + MGP_C3HHeJ_P0085144 Trim6 protein_coding protein_coding MGP_C3HHeJ_T0085145.1 MGP_C3HHeJ_G0032404.1 mouse_genomes_project 7 107524594 107530746 + MGP_C3HHeJ_P0085145 Trim6 protein_coding protein_coding MGP_C3HHeJ_T0015556.1 MGP_C3HHeJ_G0013660.1 mouse_genomes_project 7 29643819 29646080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008922.1 MGP_C3HHeJ_G0007179.1 mouse_genomes_project 7 125062402 125101328 + Gm45079 lincRNA lincRNA MGP_C3HHeJ_T0010814.1 MGP_C3HHeJ_G0008947.1 mouse_genomes_project 7 82348829 82348928 + Gm24541 miRNA miRNA MGP_C3HHeJ_T0085406.1 MGP_C3HHeJ_G0032538.1 mouse_genomes_project 7 112707118 112870300 - Stk33 protein_coding processed_transcript MGP_C3HHeJ_T0085407.1 MGP_C3HHeJ_G0032538.1 mouse_genomes_project 7 112707118 112870295 - MGP_C3HHeJ_P0085407 Stk33 protein_coding protein_coding MGP_C3HHeJ_T0085408.1 MGP_C3HHeJ_G0032538.1 mouse_genomes_project 7 112707118 112870036 - MGP_C3HHeJ_P0085408 Stk33 protein_coding protein_coding MGP_C3HHeJ_T0085409.1 MGP_C3HHeJ_G0032538.1 mouse_genomes_project 7 112707118 112870300 - MGP_C3HHeJ_P0085409 Stk33 protein_coding protein_coding MGP_C3HHeJ_T0085410.1 MGP_C3HHeJ_G0032538.1 mouse_genomes_project 7 112707490 112870217 - MGP_C3HHeJ_P0085410 Stk33 protein_coding protein_coding MGP_C3HHeJ_T0015632.1 MGP_C3HHeJ_G0013736.1 mouse_genomes_project 7 71246493 71247496 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005126.1 MGP_C3HHeJ_G0004357.1 mouse_genomes_project 7 35199312 35199665 + Gm45095 antisense antisense MGP_C3HHeJ_T0085804.1 MGP_C3HHeJ_G0032625.1 mouse_genomes_project 7 123968777 124014728 + Abca14 protein_coding processed_transcript MGP_C3HHeJ_T0085805.1 MGP_C3HHeJ_G0032625.1 mouse_genomes_project 7 123968780 124076864 + MGP_C3HHeJ_P0085805 Abca14 protein_coding protein_coding MGP_C3HHeJ_T0085806.1 MGP_C3HHeJ_G0032625.1 mouse_genomes_project 7 123968820 123977705 + Abca14 protein_coding retained_intron MGP_C3HHeJ_T0085807.1 MGP_C3HHeJ_G0032625.1 mouse_genomes_project 7 123968823 123981003 + Abca14 protein_coding processed_transcript MGP_C3HHeJ_T0081157.1 MGP_C3HHeJ_G0031308.1 mouse_genomes_project 7 3508147 3509208 + MGP_C3HHeJ_P0081157 Olfr1344 protein_coding protein_coding MGP_C3HHeJ_T0084180.1 MGP_C3HHeJ_G0032100.1 mouse_genomes_project 7 82181043 82182591 - MGP_C3HHeJ_P0084180 Mesp1 protein_coding protein_coding MGP_C3HHeJ_T0002262.1 MGP_C3HHeJ_G0002182.1 mouse_genomes_project 7 126448470 126449807 + TEC TEC MGP_C3HHeJ_T0102305.1 MGP_C3HHeJ_G0040268.1 mouse_genomes_project 7 107120581 107121669 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081490.1 MGP_C3HHeJ_G0031433.1 mouse_genomes_project 7 15888774 15942119 + MGP_C3HHeJ_P0081490 Ceacam5 protein_coding protein_coding MGP_C3HHeJ_T0002260.1 MGP_C3HHeJ_G0002180.1 mouse_genomes_project 7 126266244 126269394 + TEC TEC MGP_C3HHeJ_T0100850.1 MGP_C3HHeJ_G0039044.1 mouse_genomes_project 7 109730138 109730274 + Gm22372 snoRNA snoRNA MGP_C3HHeJ_T0085386.1 MGP_C3HHeJ_G0032527.1 mouse_genomes_project 7 112163065 112163995 + MGP_C3HHeJ_P0085386 Olfr513 protein_coding protein_coding MGP_C3HHeJ_T0085359.1 MGP_C3HHeJ_G0032500.1 mouse_genomes_project 7 111294494 111295427 + MGP_C3HHeJ_P0085359 Olfr474 protein_coding protein_coding MGP_C3HHeJ_T0086886.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143379397 143405005 + Ppp2r2d protein_coding retained_intron MGP_C3HHeJ_T0086887.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143379704 143403087 + MGP_C3HHeJ_P0086887 Ppp2r2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086888.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143379797 143415791 + MGP_C3HHeJ_P0086888 Ppp2r2d protein_coding protein_coding MGP_C3HHeJ_T0086889.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143379905 143403130 + Ppp2r2d protein_coding processed_transcript MGP_C3HHeJ_T0086890.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143379938 143409871 + MGP_C3HHeJ_P0086890 Ppp2r2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086891.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143380178 143403105 + Ppp2r2d protein_coding processed_transcript MGP_C3HHeJ_T0086892.1 MGP_C3HHeJ_G0032840.1 mouse_genomes_project 7 143401712 143409865 + MGP_C3HHeJ_P0086892 Ppp2r2d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084931.1 MGP_C3HHeJ_G0032289.1 mouse_genomes_project 7 104982668 104991411 - Inppl1 protein_coding processed_transcript MGP_C3HHeJ_T0084932.1 MGP_C3HHeJ_G0032289.1 mouse_genomes_project 7 104982706 104999561 - MGP_C3HHeJ_P0084932 Inppl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084933.1 MGP_C3HHeJ_G0032289.1 mouse_genomes_project 7 104983952 104999840 - MGP_C3HHeJ_P0084933 Inppl1 protein_coding protein_coding MGP_C3HHeJ_T0083130.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277702 45288196 + MGP_C3HHeJ_P0083130 protein_coding protein_coding MGP_C3HHeJ_T0083131.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277715 45288194 + MGP_C3HHeJ_P0083131 protein_coding protein_coding MGP_C3HHeJ_T0083132.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277734 45283178 + MGP_C3HHeJ_P0083132 protein_coding protein_coding MGP_C3HHeJ_T0083133.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277767 45279733 + protein_coding processed_transcript MGP_C3HHeJ_T0083134.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277767 45288192 + MGP_C3HHeJ_P0083134 protein_coding protein_coding MGP_C3HHeJ_T0083135.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277767 45288189 + MGP_C3HHeJ_P0083135 protein_coding protein_coding MGP_C3HHeJ_T0083136.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277767 45283295 + MGP_C3HHeJ_P0083136 protein_coding protein_coding MGP_C3HHeJ_T0083137.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277769 45288189 + MGP_C3HHeJ_P0083137 protein_coding protein_coding MGP_C3HHeJ_T0083138.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277771 45288190 + MGP_C3HHeJ_P0083138 protein_coding protein_coding MGP_C3HHeJ_T0083139.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277777 45279147 + protein_coding processed_transcript MGP_C3HHeJ_T0083140.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277780 45281036 + protein_coding processed_transcript MGP_C3HHeJ_T0083141.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277788 45281462 + protein_coding processed_transcript MGP_C3HHeJ_T0083142.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45277798 45281509 + protein_coding processed_transcript MGP_C3HHeJ_T0083143.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45278211 45281782 + MGP_C3HHeJ_P0083143 protein_coding protein_coding MGP_C3HHeJ_T0083144.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45278422 45288189 + MGP_C3HHeJ_P0083144 protein_coding protein_coding MGP_C3HHeJ_T0083145.1 MGP_C3HHeJ_G0031862.1 mouse_genomes_project 7 45280574 45288192 + MGP_C3HHeJ_P0083145 protein_coding protein_coding MGP_C3HHeJ_T0086764.1 MGP_C3HHeJ_G0032811.1 mouse_genomes_project 7 136925908 136947492 + Lhpp protein_coding processed_transcript MGP_C3HHeJ_T0086765.1 MGP_C3HHeJ_G0032811.1 mouse_genomes_project 7 136925909 137024843 + MGP_C3HHeJ_P0086765 Lhpp protein_coding protein_coding MGP_C3HHeJ_T0086766.1 MGP_C3HHeJ_G0032811.1 mouse_genomes_project 7 136925937 136989162 + Lhpp protein_coding processed_transcript MGP_C3HHeJ_T0086767.1 MGP_C3HHeJ_G0032811.1 mouse_genomes_project 7 136925978 137024200 + Lhpp protein_coding processed_transcript MGP_C3HHeJ_T0086768.1 MGP_C3HHeJ_G0032811.1 mouse_genomes_project 7 136947236 136958433 + Lhpp protein_coding retained_intron MGP_C3HHeJ_T0086571.1 MGP_C3HHeJ_G0032771.1 mouse_genomes_project 7 132255733 132309849 + MGP_C3HHeJ_P0086571 Itgad protein_coding protein_coding MGP_C3HHeJ_T0086572.1 MGP_C3HHeJ_G0032771.1 mouse_genomes_project 7 132274876 132309852 + MGP_C3HHeJ_P0086572 Itgad protein_coding protein_coding MGP_C3HHeJ_T0086573.1 MGP_C3HHeJ_G0032771.1 mouse_genomes_project 7 132274885 132309849 + MGP_C3HHeJ_P0086573 Itgad protein_coding protein_coding MGP_C3HHeJ_T0086574.1 MGP_C3HHeJ_G0032771.1 mouse_genomes_project 7 132306872 132309852 + MGP_C3HHeJ_P0086574 Itgad protein_coding protein_coding MGP_C3HHeJ_T0086575.1 MGP_C3HHeJ_G0032771.1 mouse_genomes_project 7 132308219 132329071 + MGP_C3HHeJ_P0086575 Itgad protein_coding protein_coding MGP_C3HHeJ_T0005223.1 MGP_C3HHeJ_G0004424.1 mouse_genomes_project 7 131664163 131664709 - 1700120K04Rik antisense antisense MGP_C3HHeJ_T0002171.1 MGP_C3HHeJ_G0002092.1 mouse_genomes_project 7 36948524 36949683 + TEC TEC MGP_C3HHeJ_T0081351.1 MGP_C3HHeJ_G0031396.1 mouse_genomes_project 7 13872992 13894451 - MGP_C3HHeJ_P0081351 Ehd2 protein_coding protein_coding MGP_C3HHeJ_T0081352.1 MGP_C3HHeJ_G0031396.1 mouse_genomes_project 7 13883698 13894359 - MGP_C3HHeJ_P0081352 Ehd2 protein_coding protein_coding MGP_C3HHeJ_T0081470.1 MGP_C3HHeJ_G0031427.1 mouse_genomes_project 7 15005547 15010836 + MGP_C3HHeJ_P0081470 Ccdc8 protein_coding protein_coding MGP_C3HHeJ_T0015736.1 MGP_C3HHeJ_G0013840.1 mouse_genomes_project 7 147071643 147072096 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085802.1 MGP_C3HHeJ_G0032624.1 mouse_genomes_project 7 123950836 123966816 - MGP_C3HHeJ_P0085802 Crym protein_coding protein_coding MGP_C3HHeJ_T0085803.1 MGP_C3HHeJ_G0032624.1 mouse_genomes_project 7 123961821 123966816 - Crym protein_coding retained_intron MGP_C3HHeJ_T0083397.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46481978 46501128 - MGP_C3HHeJ_P0083397 Snrnp70 protein_coding protein_coding MGP_C3HHeJ_T0083398.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46481984 46489411 - MGP_C3HHeJ_P0083398 Snrnp70 protein_coding protein_coding MGP_C3HHeJ_T0083399.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46481987 46501044 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083400.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46481988 46501078 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083401.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46482671 46497704 - MGP_C3HHeJ_P0083401 Snrnp70 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083402.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46486878 46489800 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083403.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46489065 46500182 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083404.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46489233 46493132 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083405.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46489283 46500559 - MGP_C3HHeJ_P0083405 Snrnp70 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083406.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46489298 46500581 - MGP_C3HHeJ_P0083406 Snrnp70 protein_coding protein_coding MGP_C3HHeJ_T0083407.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46492310 46500102 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083408.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46492751 46501095 - MGP_C3HHeJ_P0083408 Snrnp70 protein_coding protein_coding MGP_C3HHeJ_T0083409.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46492795 46498161 - Snrnp70 protein_coding processed_transcript MGP_C3HHeJ_T0083410.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46496349 46498267 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0083411.1 MGP_C3HHeJ_G0031924.1 mouse_genomes_project 7 46497206 46500943 - Snrnp70 protein_coding retained_intron MGP_C3HHeJ_T0002179.1 MGP_C3HHeJ_G0002100.1 mouse_genomes_project 7 40007985 40010356 - TEC TEC MGP_C3HHeJ_T0102275.1 MGP_C3HHeJ_G0040238.1 mouse_genomes_project 7 88032835 88035370 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086297.1 MGP_C3HHeJ_G0032715.1 mouse_genomes_project 7 131027868 131032163 - MGP_C3HHeJ_P0086297 Maz protein_coding unknown_likely_coding MGP_C3HHeJ_T0086298.1 MGP_C3HHeJ_G0032715.1 mouse_genomes_project 7 131027877 131032196 - MGP_C3HHeJ_P0086298 Maz protein_coding protein_coding MGP_C3HHeJ_T0086299.1 MGP_C3HHeJ_G0032715.1 mouse_genomes_project 7 131027878 131032058 - MGP_C3HHeJ_P0086299 Maz protein_coding protein_coding MGP_C3HHeJ_T0086300.1 MGP_C3HHeJ_G0032715.1 mouse_genomes_project 7 131028633 131032316 - MGP_C3HHeJ_P0086300 Maz protein_coding protein_coding MGP_C3HHeJ_T0086301.1 MGP_C3HHeJ_G0032715.1 mouse_genomes_project 7 131028793 131030876 - Maz protein_coding retained_intron MGP_C3HHeJ_T0085369.1 MGP_C3HHeJ_G0032510.1 mouse_genomes_project 7 111535993 111551297 - MGP_C3HHeJ_P0085369 protein_coding protein_coding MGP_C3HHeJ_T0102215.1 MGP_C3HHeJ_G0040178.1 mouse_genomes_project 7 33820432 33821258 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085371.1 MGP_C3HHeJ_G0032512.1 mouse_genomes_project 7 111639843 111640788 - MGP_C3HHeJ_P0085371 Olfr488 protein_coding protein_coding MGP_C3HHeJ_T0010802.1 MGP_C3HHeJ_G0008935.1 mouse_genomes_project 7 63748704 63748775 - Mir344g miRNA miRNA MGP_C3HHeJ_T0086632.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132743106 132806664 + Inpp5f protein_coding processed_transcript MGP_C3HHeJ_T0086633.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132743138 132831501 + MGP_C3HHeJ_P0086633 Inpp5f protein_coding protein_coding MGP_C3HHeJ_T0086634.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132794039 132812539 + Inpp5f protein_coding retained_intron MGP_C3HHeJ_T0086635.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132798724 132803617 + Inpp5f protein_coding processed_transcript MGP_C3HHeJ_T0086636.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132802736 132803822 + Inpp5f protein_coding retained_intron MGP_C3HHeJ_T0086637.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132814750 132831350 + Inpp5f protein_coding retained_intron MGP_C3HHeJ_T0086638.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132823557 132828727 + MGP_C3HHeJ_P0086638 Inpp5f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086639.1 MGP_C3HHeJ_G0032782.1 mouse_genomes_project 7 132824317 132831352 + MGP_C3HHeJ_P0086639 Inpp5f protein_coding protein_coding MGP_C3HHeJ_T0087074.1 MGP_C3HHeJ_G0032902.1 mouse_genomes_project 7 145648604 145649789 - MGP_C3HHeJ_P0087074 Ifitm3 protein_coding protein_coding MGP_C3HHeJ_T0081709.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18218871 18221532 - MGP_C3HHeJ_P0081709 Bcl3 protein_coding protein_coding MGP_C3HHeJ_T0081710.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18218871 18233345 - MGP_C3HHeJ_P0081710 Bcl3 protein_coding protein_coding MGP_C3HHeJ_T0081711.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18221527 18222300 - Bcl3 protein_coding retained_intron MGP_C3HHeJ_T0081712.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18221759 18223244 - Bcl3 protein_coding retained_intron MGP_C3HHeJ_T0081713.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18221905 18226530 - Bcl3 protein_coding processed_transcript MGP_C3HHeJ_T0081714.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18221996 18232732 - MGP_C3HHeJ_P0081714 Bcl3 protein_coding protein_coding MGP_C3HHeJ_T0081715.1 MGP_C3HHeJ_G0031500.1 mouse_genomes_project 7 18222805 18233345 - Bcl3 protein_coding processed_transcript MGP_C3HHeJ_T0002195.1 MGP_C3HHeJ_G0002116.1 mouse_genomes_project 7 56676309 56677727 + TEC TEC MGP_C3HHeJ_T0081116.1 MGP_C3HHeJ_G0031292.1 mouse_genomes_project 7 2361839 2372015 + MGP_C3HHeJ_P0081116 Gm5065 protein_coding protein_coding MGP_C3HHeJ_T0081216.1 MGP_C3HHeJ_G0031349.1 mouse_genomes_project 7 10126735 10146652 - MGP_C3HHeJ_P0081216 protein_coding protein_coding MGP_C3HHeJ_T0015606.1 MGP_C3HHeJ_G0013710.1 mouse_genomes_project 7 48029353 48029907 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083003.1 MGP_C3HHeJ_G0031813.1 mouse_genomes_project 7 42135373 42168893 - MGP_C3HHeJ_P0083003 AW146154 protein_coding protein_coding MGP_C3HHeJ_T0083004.1 MGP_C3HHeJ_G0031813.1 mouse_genomes_project 7 42141400 42142535 - AW146154 protein_coding retained_intron MGP_C3HHeJ_T0083005.1 MGP_C3HHeJ_G0031813.1 mouse_genomes_project 7 42158674 42168430 - AW146154 protein_coding processed_transcript MGP_C3HHeJ_T0081415.1 MGP_C3HHeJ_G0031415.1 mouse_genomes_project 7 14716653 14719168 + MGP_C3HHeJ_P0081415 Ceacam9 protein_coding protein_coding MGP_C3HHeJ_T0085115.1 MGP_C3HHeJ_G0032381.1 mouse_genomes_project 7 107176121 107177057 - MGP_C3HHeJ_P0085115 Olfr66 protein_coding protein_coding MGP_C3HHeJ_T0005118.1 MGP_C3HHeJ_G0004351.1 mouse_genomes_project 7 30391098 30395309 + Gm4673 antisense antisense MGP_C3HHeJ_T0085085.1 MGP_C3HHeJ_G0032353.1 mouse_genomes_project 7 106599959 106600904 - MGP_C3HHeJ_P0085085 Olfr600 protein_coding protein_coding MGP_C3HHeJ_T0008962.1 MGP_C3HHeJ_G0007206.1 mouse_genomes_project 7 134986894 134988909 - Etos1 lincRNA lincRNA MGP_C3HHeJ_T0102252.1 MGP_C3HHeJ_G0040215.1 mouse_genomes_project 7 49275441 49422394 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102312.1 MGP_C3HHeJ_G0040275.1 mouse_genomes_project 7 107500384 107501380 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005168.1 MGP_C3HHeJ_G0004386.1 mouse_genomes_project 7 82840662 82842971 + Gm44851 antisense antisense MGP_C3HHeJ_T0084194.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82507406 82528560 - MGP_C3HHeJ_P0084194 Idh2 protein_coding protein_coding MGP_C3HHeJ_T0084195.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82507410 82528500 - MGP_C3HHeJ_P0084195 Idh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084196.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82507589 82510964 - Idh2 protein_coding retained_intron MGP_C3HHeJ_T0084197.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82507603 82508590 - Idh2 protein_coding retained_intron MGP_C3HHeJ_T0084198.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82507619 82528472 - MGP_C3HHeJ_P0084198 Idh2 protein_coding protein_coding MGP_C3HHeJ_T0084199.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82508588 82513436 - MGP_C3HHeJ_P0084199 Idh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084200.1 MGP_C3HHeJ_G0032106.1 mouse_genomes_project 7 82510726 82511694 - Idh2 protein_coding retained_intron MGP_C3HHeJ_T0081416.1 MGP_C3HHeJ_G0031416.1 mouse_genomes_project 7 14738140 14748961 + MGP_C3HHeJ_P0081416 Ap2s1 protein_coding protein_coding MGP_C3HHeJ_T0081417.1 MGP_C3HHeJ_G0031416.1 mouse_genomes_project 7 14738174 14748681 + MGP_C3HHeJ_P0081417 Ap2s1 protein_coding protein_coding MGP_C3HHeJ_T0081418.1 MGP_C3HHeJ_G0031416.1 mouse_genomes_project 7 14738202 14748601 + MGP_C3HHeJ_P0081418 Ap2s1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081419.1 MGP_C3HHeJ_G0031416.1 mouse_genomes_project 7 14738268 14748415 + Ap2s1 protein_coding processed_transcript MGP_C3HHeJ_T0081420.1 MGP_C3HHeJ_G0031416.1 mouse_genomes_project 7 14746429 14748961 + Ap2s1 protein_coding retained_intron MGP_C3HHeJ_T0008714.1 MGP_C3HHeJ_G0007030.1 mouse_genomes_project 7 370066 397027 + Gm44160 lincRNA lincRNA MGP_C3HHeJ_T0102164.1 MGP_C3HHeJ_G0040128.1 mouse_genomes_project 7 9676059 9677048 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081672.1 MGP_C3HHeJ_G0031492.1 mouse_genomes_project 7 18067192 18071475 - MGP_C3HHeJ_P0081672 protein_coding protein_coding MGP_C3HHeJ_T0081673.1 MGP_C3HHeJ_G0031492.1 mouse_genomes_project 7 18067197 18068496 - MGP_C3HHeJ_P0081673 protein_coding protein_coding MGP_C3HHeJ_T0081674.1 MGP_C3HHeJ_G0031492.1 mouse_genomes_project 7 18067197 18076105 - MGP_C3HHeJ_P0081674 protein_coding protein_coding MGP_C3HHeJ_T0081675.1 MGP_C3HHeJ_G0031492.1 mouse_genomes_project 7 18067197 18072563 - MGP_C3HHeJ_P0081675 protein_coding protein_coding MGP_C3HHeJ_T0081676.1 MGP_C3HHeJ_G0031492.1 mouse_genomes_project 7 18067859 18076118 - MGP_C3HHeJ_P0081676 protein_coding protein_coding MGP_C3HHeJ_T0085797.1 MGP_C3HHeJ_G0032621.1 mouse_genomes_project 7 123858995 123880819 + MGP_C3HHeJ_P0085797 Tmem159 protein_coding protein_coding MGP_C3HHeJ_T0085798.1 MGP_C3HHeJ_G0032621.1 mouse_genomes_project 7 123859014 123861859 + Tmem159 protein_coding retained_intron MGP_C3HHeJ_T0085799.1 MGP_C3HHeJ_G0032621.1 mouse_genomes_project 7 123859527 123880825 + MGP_C3HHeJ_P0085799 Tmem159 protein_coding protein_coding MGP_C3HHeJ_T0087308.1 MGP_C3HHeJ_G0032953.1 mouse_genomes_project 7 147146719 147158950 - MGP_C3HHeJ_P0087308 Ctsd protein_coding protein_coding MGP_C3HHeJ_T0087309.1 MGP_C3HHeJ_G0032953.1 mouse_genomes_project 7 147152192 147164321 - MGP_C3HHeJ_P0087309 Ctsd protein_coding protein_coding MGP_C3HHeJ_T0087310.1 MGP_C3HHeJ_G0032953.1 mouse_genomes_project 7 147152211 147164102 - MGP_C3HHeJ_P0087310 Ctsd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087311.1 MGP_C3HHeJ_G0032953.1 mouse_genomes_project 7 147159476 147164102 - Ctsd protein_coding retained_intron MGP_C3HHeJ_T0085046.1 MGP_C3HHeJ_G0032317.1 mouse_genomes_project 7 105808816 105809895 - MGP_C3HHeJ_P0085046 Olfr551 protein_coding protein_coding MGP_C3HHeJ_T0084486.1 MGP_C3HHeJ_G0032177.1 mouse_genomes_project 7 89002783 89016325 + MGP_C3HHeJ_P0084486 Olfr301 protein_coding protein_coding MGP_C3HHeJ_T0015663.1 MGP_C3HHeJ_G0013767.1 mouse_genomes_project 7 91254107 91255087 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015615.1 MGP_C3HHeJ_G0013719.1 mouse_genomes_project 7 57233905 57234263 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086996.1 MGP_C3HHeJ_G0032866.1 mouse_genomes_project 7 144774809 144775865 + MGP_C3HHeJ_P0086996 Olfr523 protein_coding protein_coding MGP_C3HHeJ_T0084843.1 MGP_C3HHeJ_G0032274.1 mouse_genomes_project 7 103673941 103708537 + MGP_C3HHeJ_P0084843 Rab6a protein_coding protein_coding MGP_C3HHeJ_T0084844.1 MGP_C3HHeJ_G0032274.1 mouse_genomes_project 7 103674120 103708537 + MGP_C3HHeJ_P0084844 Rab6a protein_coding protein_coding MGP_C3HHeJ_T0084845.1 MGP_C3HHeJ_G0032274.1 mouse_genomes_project 7 103674224 103708537 + MGP_C3HHeJ_P0084845 Rab6a protein_coding protein_coding MGP_C3HHeJ_T0084846.1 MGP_C3HHeJ_G0032274.1 mouse_genomes_project 7 103701612 103706634 + Rab6a protein_coding retained_intron MGP_C3HHeJ_T0081193.1 MGP_C3HHeJ_G0031332.1 mouse_genomes_project 7 8014652 8016689 - MGP_C3HHeJ_P0081193 Vmn1r71 protein_coding protein_coding MGP_C3HHeJ_T0086477.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869343 131872546 + Hsd3b7 protein_coding retained_intron MGP_C3HHeJ_T0086478.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869343 131872546 + Hsd3b7 protein_coding retained_intron MGP_C3HHeJ_T0086479.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869353 131872546 + MGP_C3HHeJ_P0086479 Hsd3b7 protein_coding protein_coding MGP_C3HHeJ_T0086480.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869353 131871142 + MGP_C3HHeJ_P0086480 Hsd3b7 protein_coding protein_coding MGP_C3HHeJ_T0086481.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869375 131870766 + MGP_C3HHeJ_P0086481 Hsd3b7 protein_coding protein_coding MGP_C3HHeJ_T0086482.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869385 131871014 + MGP_C3HHeJ_P0086482 Hsd3b7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086483.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869386 131870967 + Hsd3b7 protein_coding retained_intron MGP_C3HHeJ_T0086484.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869394 131871945 + MGP_C3HHeJ_P0086484 Hsd3b7 protein_coding protein_coding MGP_C3HHeJ_T0086485.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869397 131870857 + Hsd3b7 protein_coding retained_intron MGP_C3HHeJ_T0086486.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869410 131871071 + Hsd3b7 protein_coding retained_intron MGP_C3HHeJ_T0086487.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869419 131870782 + MGP_C3HHeJ_P0086487 Hsd3b7 protein_coding protein_coding MGP_C3HHeJ_T0086488.1 MGP_C3HHeJ_G0032753.1 mouse_genomes_project 7 131869678 131870256 + MGP_C3HHeJ_P0086488 Hsd3b7 protein_coding protein_coding MGP_C3HHeJ_T0005152.1 MGP_C3HHeJ_G0004375.1 mouse_genomes_project 7 75482241 75549947 - A730056A06Rik antisense antisense MGP_C3HHeJ_T0005153.1 MGP_C3HHeJ_G0004375.1 mouse_genomes_project 7 75484988 75549956 - A730056A06Rik antisense antisense MGP_C3HHeJ_T0083910.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67969632 67986263 + Snrpa1 protein_coding processed_transcript MGP_C3HHeJ_T0083911.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67970929 67980155 + Snrpa1 protein_coding processed_transcript MGP_C3HHeJ_T0083912.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67970968 67986507 + MGP_C3HHeJ_P0083912 Snrpa1 protein_coding protein_coding MGP_C3HHeJ_T0083913.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67971162 67986296 + Snrpa1 protein_coding processed_transcript MGP_C3HHeJ_T0083914.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67971174 67986500 + MGP_C3HHeJ_P0083914 Snrpa1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083915.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67971194 67982238 + Snrpa1 protein_coding retained_intron MGP_C3HHeJ_T0083916.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67971233 67986290 + Snrpa1 protein_coding processed_transcript MGP_C3HHeJ_T0083917.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67971411 67972797 + Snrpa1 protein_coding processed_transcript MGP_C3HHeJ_T0083918.1 MGP_C3HHeJ_G0032051.1 mouse_genomes_project 7 67979480 67980152 + Snrpa1 protein_coding retained_intron MGP_C3HHeJ_T0008810.1 MGP_C3HHeJ_G0007108.1 mouse_genomes_project 7 70281661 70372617 + lincRNA lincRNA MGP_C3HHeJ_T0008811.1 MGP_C3HHeJ_G0007108.1 mouse_genomes_project 7 70283794 70363160 + lincRNA lincRNA MGP_C3HHeJ_T0008812.1 MGP_C3HHeJ_G0007108.1 mouse_genomes_project 7 70309406 70372615 + lincRNA lincRNA MGP_C3HHeJ_T0008813.1 MGP_C3HHeJ_G0007108.1 mouse_genomes_project 7 70340646 70363239 + lincRNA lincRNA MGP_C3HHeJ_T0087442.1 MGP_C3HHeJ_G0032973.1 mouse_genomes_project 7 148299163 148300160 - MGP_C3HHeJ_P0087442 Phlda2 protein_coding protein_coding MGP_C3HHeJ_T0100864.1 MGP_C3HHeJ_G0039058.1 mouse_genomes_project 7 128413559 128413702 + Gm23168 snoRNA snoRNA MGP_C3HHeJ_T0082043.1 MGP_C3HHeJ_G0031596.1 mouse_genomes_project 7 25670128 25691656 - MGP_C3HHeJ_P0082043 Cyp2b23 protein_coding protein_coding MGP_C3HHeJ_T0082545.1 MGP_C3HHeJ_G0031724.1 mouse_genomes_project 7 29828451 29838267 - Kirrel2 protein_coding retained_intron MGP_C3HHeJ_T0082546.1 MGP_C3HHeJ_G0031724.1 mouse_genomes_project 7 29828453 29838130 - MGP_C3HHeJ_P0082546 Kirrel2 protein_coding protein_coding MGP_C3HHeJ_T0082547.1 MGP_C3HHeJ_G0031724.1 mouse_genomes_project 7 29828988 29831631 - MGP_C3HHeJ_P0082547 Kirrel2 protein_coding protein_coding MGP_C3HHeJ_T0082548.1 MGP_C3HHeJ_G0031724.1 mouse_genomes_project 7 29829036 29837464 - MGP_C3HHeJ_P0082548 Kirrel2 protein_coding protein_coding MGP_C3HHeJ_T0082549.1 MGP_C3HHeJ_G0031724.1 mouse_genomes_project 7 29837598 29838305 - Kirrel2 protein_coding processed_transcript MGP_C3HHeJ_T0084732.1 MGP_C3HHeJ_G0032243.1 mouse_genomes_project 7 101779495 101792059 + MGP_C3HHeJ_P0084732 Wnt11 protein_coding protein_coding MGP_C3HHeJ_T0084733.1 MGP_C3HHeJ_G0032243.1 mouse_genomes_project 7 101779495 101799285 + MGP_C3HHeJ_P0084733 Wnt11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084734.1 MGP_C3HHeJ_G0032243.1 mouse_genomes_project 7 101779514 101800685 + MGP_C3HHeJ_P0084734 Wnt11 protein_coding protein_coding MGP_C3HHeJ_T0084735.1 MGP_C3HHeJ_G0032243.1 mouse_genomes_project 7 101783203 101799225 + MGP_C3HHeJ_P0084735 Wnt11 protein_coding protein_coding MGP_C3HHeJ_T0084736.1 MGP_C3HHeJ_G0032243.1 mouse_genomes_project 7 101783256 101799043 + MGP_C3HHeJ_P0084736 Wnt11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008817.1 MGP_C3HHeJ_G0007111.1 mouse_genomes_project 7 72448845 72465306 - Gm28258 lincRNA lincRNA MGP_C3HHeJ_T0008779.1 MGP_C3HHeJ_G0007084.1 mouse_genomes_project 7 42044472 42048096 + Gm17102 lincRNA lincRNA MGP_C3HHeJ_T0082475.1 MGP_C3HHeJ_G0031707.1 mouse_genomes_project 7 29559425 29561283 + MGP_C3HHeJ_P0082475 Cox7a1 protein_coding protein_coding MGP_C3HHeJ_T0085198.1 MGP_C3HHeJ_G0032435.1 mouse_genomes_project 7 108408861 108410418 - MGP_C3HHeJ_P0085198 Olfr683 protein_coding protein_coding MGP_C3HHeJ_T0010827.1 MGP_C3HHeJ_G0008960.1 mouse_genomes_project 7 118763207 118763287 + Gm27684 miRNA miRNA MGP_C3HHeJ_T0002244.1 MGP_C3HHeJ_G0002164.1 mouse_genomes_project 7 82523957 82525798 - TEC TEC MGP_C3HHeJ_T0086863.1 MGP_C3HHeJ_G0032829.1 mouse_genomes_project 7 139849030 139852233 + MGP_C3HHeJ_P0086863 protein_coding protein_coding MGP_C3HHeJ_T0102289.1 MGP_C3HHeJ_G0040252.1 mouse_genomes_project 7 88765447 88766318 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100835.1 MGP_C3HHeJ_G0039029.1 mouse_genomes_project 7 64415008 64415136 + Gm22494 snoRNA snoRNA MGP_C3HHeJ_T0081909.1 MGP_C3HHeJ_G0031561.1 mouse_genomes_project 7 24038449 24044502 + MGP_C3HHeJ_P0081909 Zfp526 protein_coding protein_coding MGP_C3HHeJ_T0002214.1 MGP_C3HHeJ_G0002135.1 mouse_genomes_project 7 75638134 75640176 - TEC TEC MGP_C3HHeJ_T0086829.1 MGP_C3HHeJ_G0032821.1 mouse_genomes_project 7 138070546 138081826 + MGP_C3HHeJ_P0086829 Bccip protein_coding protein_coding MGP_C3HHeJ_T0086830.1 MGP_C3HHeJ_G0032821.1 mouse_genomes_project 7 138070561 138076127 + Bccip protein_coding retained_intron MGP_C3HHeJ_T0086831.1 MGP_C3HHeJ_G0032821.1 mouse_genomes_project 7 138070615 138074994 + Bccip protein_coding processed_transcript MGP_C3HHeJ_T0086832.1 MGP_C3HHeJ_G0032821.1 mouse_genomes_project 7 138075422 138081622 + Bccip protein_coding processed_transcript MGP_C3HHeJ_T0086833.1 MGP_C3HHeJ_G0032821.1 mouse_genomes_project 7 138078059 138079896 + Bccip protein_coding retained_intron MGP_C3HHeJ_T0085103.1 MGP_C3HHeJ_G0032371.1 mouse_genomes_project 7 107001379 107002324 - MGP_C3HHeJ_P0085103 Olfr629 protein_coding protein_coding MGP_C3HHeJ_T0085102.1 MGP_C3HHeJ_G0032370.1 mouse_genomes_project 7 106973680 106974631 + MGP_C3HHeJ_P0085102 Olfr243 protein_coding protein_coding MGP_C3HHeJ_T0015705.1 MGP_C3HHeJ_G0013809.1 mouse_genomes_project 7 125979321 125979735 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015496.1 MGP_C3HHeJ_G0013600.1 mouse_genomes_project 7 1609539 1611967 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081091.1 MGP_C3HHeJ_G0031277.1 mouse_genomes_project 7 2023713 2031004 - MGP_C3HHeJ_P0081091 Fiz1 protein_coding protein_coding MGP_C3HHeJ_T0081092.1 MGP_C3HHeJ_G0031277.1 mouse_genomes_project 7 2023713 2029997 - MGP_C3HHeJ_P0081092 Fiz1 protein_coding protein_coding MGP_C3HHeJ_T0081093.1 MGP_C3HHeJ_G0031277.1 mouse_genomes_project 7 2023713 2031448 - MGP_C3HHeJ_P0081093 Fiz1 protein_coding protein_coding MGP_C3HHeJ_T0005216.1 MGP_C3HHeJ_G0004418.1 mouse_genomes_project 7 129495423 129496765 - Gm44876 antisense antisense MGP_C3HHeJ_T0084360.1 MGP_C3HHeJ_G0032131.1 mouse_genomes_project 7 83845467 83847267 - Rps17 protein_coding processed_transcript MGP_C3HHeJ_T0084361.1 MGP_C3HHeJ_G0032131.1 mouse_genomes_project 7 83845468 83847990 - MGP_C3HHeJ_P0084361 Rps17 protein_coding protein_coding MGP_C3HHeJ_T0084362.1 MGP_C3HHeJ_G0032131.1 mouse_genomes_project 7 83845475 83847970 - Rps17 protein_coding retained_intron MGP_C3HHeJ_T0084363.1 MGP_C3HHeJ_G0032131.1 mouse_genomes_project 7 83846152 83847968 - Rps17 protein_coding retained_intron MGP_C3HHeJ_T0084364.1 MGP_C3HHeJ_G0032131.1 mouse_genomes_project 7 83847439 83847960 - Rps17 protein_coding processed_transcript MGP_C3HHeJ_T0015577.1 MGP_C3HHeJ_G0013681.1 mouse_genomes_project 7 35669312 35671575 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081150.1 MGP_C3HHeJ_G0031304.1 mouse_genomes_project 7 3437313 3445983 + MGP_C3HHeJ_P0081150 Zfp78 protein_coding protein_coding MGP_C3HHeJ_T0081151.1 MGP_C3HHeJ_G0031304.1 mouse_genomes_project 7 3437313 3445983 + MGP_C3HHeJ_P0081151 Zfp78 protein_coding protein_coding MGP_C3HHeJ_T0102154.1 MGP_C3HHeJ_G0040118.1 mouse_genomes_project 7 7931906 7932768 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082204.1 MGP_C3HHeJ_G0031638.1 mouse_genomes_project 7 27284254 27326257 + MGP_C3HHeJ_P0082204 9530053A07Rik protein_coding protein_coding MGP_C3HHeJ_T0082205.1 MGP_C3HHeJ_G0031638.1 mouse_genomes_project 7 27284604 27302727 + 9530053A07Rik protein_coding retained_intron MGP_C3HHeJ_T0082206.1 MGP_C3HHeJ_G0031638.1 mouse_genomes_project 7 27284604 27300394 + 9530053A07Rik protein_coding retained_intron MGP_C3HHeJ_T0082207.1 MGP_C3HHeJ_G0031638.1 mouse_genomes_project 7 27284604 27326241 + MGP_C3HHeJ_P0082207 9530053A07Rik protein_coding protein_coding MGP_C3HHeJ_T0083337.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46230724 46252932 - MGP_C3HHeJ_P0083337 Aldh16a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083338.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46239125 46252977 - Aldh16a1 protein_coding retained_intron MGP_C3HHeJ_T0083339.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46239346 46253024 - MGP_C3HHeJ_P0083339 Aldh16a1 protein_coding protein_coding MGP_C3HHeJ_T0083340.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46240276 46243131 - MGP_C3HHeJ_P0083340 Aldh16a1 protein_coding protein_coding MGP_C3HHeJ_T0083341.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46240886 46253035 - MGP_C3HHeJ_P0083341 Aldh16a1 protein_coding protein_coding MGP_C3HHeJ_T0083342.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46241220 46243165 - Aldh16a1 protein_coding processed_transcript MGP_C3HHeJ_T0083343.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46243493 46244476 - Aldh16a1 protein_coding retained_intron MGP_C3HHeJ_T0083344.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46245839 46252941 - Aldh16a1 protein_coding processed_transcript MGP_C3HHeJ_T0083345.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46245900 46252898 - Aldh16a1 protein_coding processed_transcript MGP_C3HHeJ_T0083346.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46245979 46246292 - Aldh16a1 protein_coding processed_transcript MGP_C3HHeJ_T0083347.1 MGP_C3HHeJ_G0031910.1 mouse_genomes_project 7 46246324 46247621 - Aldh16a1 protein_coding retained_intron MGP_C3HHeJ_T0015575.1 MGP_C3HHeJ_G0013679.1 mouse_genomes_project 7 34493998 34494414 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005113.1 MGP_C3HHeJ_G0004347.1 mouse_genomes_project 7 30127112 30150757 + Tmem147os antisense antisense MGP_C3HHeJ_T0005114.1 MGP_C3HHeJ_G0004347.1 mouse_genomes_project 7 30130335 30135761 + Tmem147os antisense antisense MGP_C3HHeJ_T0010735.1 MGP_C3HHeJ_G0008868.1 mouse_genomes_project 7 112712 112770 - Mir290b miRNA miRNA MGP_C3HHeJ_T0086645.1 MGP_C3HHeJ_G0032784.1 mouse_genomes_project 7 132881922 132921728 + MGP_C3HHeJ_P0086645 Sec23ip protein_coding protein_coding MGP_C3HHeJ_T0086646.1 MGP_C3HHeJ_G0032784.1 mouse_genomes_project 7 132881956 132886556 + Sec23ip protein_coding retained_intron MGP_C3HHeJ_T0086647.1 MGP_C3HHeJ_G0032784.1 mouse_genomes_project 7 132882014 132891114 + MGP_C3HHeJ_P0086647 Sec23ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086648.1 MGP_C3HHeJ_G0032784.1 mouse_genomes_project 7 132882399 132887354 + MGP_C3HHeJ_P0086648 Sec23ip protein_coding protein_coding MGP_C3HHeJ_T0083484.1 MGP_C3HHeJ_G0031945.1 mouse_genomes_project 7 46824396 46835458 + MGP_C3HHeJ_P0083484 Ntn5 protein_coding protein_coding MGP_C3HHeJ_T0083485.1 MGP_C3HHeJ_G0031945.1 mouse_genomes_project 7 46824778 46835461 + MGP_C3HHeJ_P0083485 Ntn5 protein_coding protein_coding MGP_C3HHeJ_T0083486.1 MGP_C3HHeJ_G0031945.1 mouse_genomes_project 7 46824791 46835332 + MGP_C3HHeJ_P0083486 Ntn5 protein_coding protein_coding MGP_C3HHeJ_T0008715.1 MGP_C3HHeJ_G0007031.1 mouse_genomes_project 7 474119 487124 - Gm44920 lincRNA lincRNA MGP_C3HHeJ_T0083475.1 MGP_C3HHeJ_G0031941.1 mouse_genomes_project 7 46761800 46775949 + MGP_C3HHeJ_P0083475 Rasip1 protein_coding protein_coding MGP_C3HHeJ_T0083932.1 MGP_C3HHeJ_G0032055.1 mouse_genomes_project 7 68293577 68314400 + MGP_C3HHeJ_P0083932 Gm10974 protein_coding protein_coding MGP_C3HHeJ_T0081180.1 MGP_C3HHeJ_G0031323.1 mouse_genomes_project 7 7398961 7429596 - MGP_C3HHeJ_P0081180 protein_coding protein_coding MGP_C3HHeJ_T0002219.1 MGP_C3HHeJ_G0002139.1 mouse_genomes_project 7 75946609 75946766 + TEC TEC MGP_C3HHeJ_T0083784.1 MGP_C3HHeJ_G0032022.1 mouse_genomes_project 7 58298528 58996404 - MGP_C3HHeJ_P0083784 Gabrg3 protein_coding protein_coding MGP_C3HHeJ_T0083785.1 MGP_C3HHeJ_G0032022.1 mouse_genomes_project 7 58779876 58996087 - MGP_C3HHeJ_P0083785 Gabrg3 protein_coding protein_coding MGP_C3HHeJ_T0083786.1 MGP_C3HHeJ_G0032022.1 mouse_genomes_project 7 58932225 58996404 - Gabrg3 protein_coding retained_intron MGP_C3HHeJ_T0084962.1 MGP_C3HHeJ_G0032294.1 mouse_genomes_project 7 105070101 105091116 + MGP_C3HHeJ_P0084962 Lamtor1 protein_coding protein_coding MGP_C3HHeJ_T0084963.1 MGP_C3HHeJ_G0032294.1 mouse_genomes_project 7 105070122 105076013 + MGP_C3HHeJ_P0084963 Lamtor1 protein_coding protein_coding MGP_C3HHeJ_T0085778.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123535171 123597222 + MGP_C3HHeJ_P0085778 2610020H08Rik protein_coding protein_coding MGP_C3HHeJ_T0085779.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123535175 123597222 + MGP_C3HHeJ_P0085779 2610020H08Rik protein_coding protein_coding MGP_C3HHeJ_T0085780.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123535316 123560284 + 2610020H08Rik protein_coding retained_intron MGP_C3HHeJ_T0085781.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123535545 123597092 + MGP_C3HHeJ_P0085781 2610020H08Rik protein_coding protein_coding MGP_C3HHeJ_T0085782.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123563532 123572211 + 2610020H08Rik protein_coding processed_transcript MGP_C3HHeJ_T0085783.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123564983 123567443 + 2610020H08Rik protein_coding retained_intron MGP_C3HHeJ_T0085784.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123578377 123592318 + 2610020H08Rik protein_coding processed_transcript MGP_C3HHeJ_T0085785.1 MGP_C3HHeJ_G0032617.1 mouse_genomes_project 7 123592484 123593715 + 2610020H08Rik protein_coding retained_intron MGP_C3HHeJ_T0085336.1 MGP_C3HHeJ_G0032484.1 mouse_genomes_project 7 110420366 110421320 + MGP_C3HHeJ_P0085336 Olfr714 protein_coding protein_coding MGP_C3HHeJ_T0102191.1 MGP_C3HHeJ_G0040155.1 mouse_genomes_project 7 13704473 13704770 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0087270.1 MGP_C3HHeJ_G0032938.1 mouse_genomes_project 7 146463472 146493428 + MGP_C3HHeJ_P0087270 Muc5ac protein_coding protein_coding MGP_C3HHeJ_T0099611.1 MGP_C3HHeJ_G0037805.1 mouse_genomes_project 7 130534904 130535011 - Gm24596 snRNA snRNA MGP_C3HHeJ_T0081280.1 MGP_C3HHeJ_G0031367.1 mouse_genomes_project 7 10719877 10720828 - MGP_C3HHeJ_P0081280 Vmn1r86 protein_coding protein_coding MGP_C3HHeJ_T0087507.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149463143 149613245 - MGP_C3HHeJ_P0087507 Ano1 protein_coding protein_coding MGP_C3HHeJ_T0087508.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149463143 149613222 - MGP_C3HHeJ_P0087508 Ano1 protein_coding protein_coding MGP_C3HHeJ_T0087509.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149463147 149613271 - MGP_C3HHeJ_P0087509 Ano1 protein_coding protein_coding MGP_C3HHeJ_T0087510.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149470034 149482884 - Ano1 protein_coding retained_intron MGP_C3HHeJ_T0087511.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149496846 149544527 - MGP_C3HHeJ_P0087511 Ano1 protein_coding protein_coding MGP_C3HHeJ_T0087512.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149525686 149627245 - MGP_C3HHeJ_P0087512 Ano1 protein_coding protein_coding MGP_C3HHeJ_T0087513.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149529286 149544524 - Ano1 protein_coding retained_intron MGP_C3HHeJ_T0087514.1 MGP_C3HHeJ_G0032987.1 mouse_genomes_project 7 149530792 149553998 - MGP_C3HHeJ_P0087514 Ano1 protein_coding protein_coding MGP_C3HHeJ_T0015731.1 MGP_C3HHeJ_G0013835.1 mouse_genomes_project 7 140430959 140431945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082329.1 MGP_C3HHeJ_G0031670.1 mouse_genomes_project 7 28137997 28150421 + MGP_C3HHeJ_P0082329 Capn12 protein_coding protein_coding MGP_C3HHeJ_T0086908.1 MGP_C3HHeJ_G0032844.1 mouse_genomes_project 7 143623921 143736270 - MGP_C3HHeJ_P0086908 Stk32c protein_coding protein_coding MGP_C3HHeJ_T0086909.1 MGP_C3HHeJ_G0032844.1 mouse_genomes_project 7 143623921 143711591 - MGP_C3HHeJ_P0086909 Stk32c protein_coding protein_coding MGP_C3HHeJ_T0085199.1 MGP_C3HHeJ_G0032436.1 mouse_genomes_project 7 108454985 108456073 - MGP_C3HHeJ_P0085199 Olfr685 protein_coding protein_coding MGP_C3HHeJ_T0087453.1 MGP_C3HHeJ_G0032976.1 mouse_genomes_project 7 148408953 148430104 - MGP_C3HHeJ_P0087453 Tnfrsf26 protein_coding protein_coding MGP_C3HHeJ_T0010749.1 MGP_C3HHeJ_G0008882.1 mouse_genomes_project 7 9913283 9913393 - Gm23521 miRNA miRNA MGP_C3HHeJ_T0097921.1 MGP_C3HHeJ_G0036133.1 mouse_genomes_project 7 73437762 73438302 - pseudogene pseudogene MGP_C3HHeJ_T0081204.1 MGP_C3HHeJ_G0031343.1 mouse_genomes_project 7 9848247 9849165 + MGP_C3HHeJ_P0081204 Vmn1r82 protein_coding protein_coding MGP_C3HHeJ_T0081205.1 MGP_C3HHeJ_G0031343.1 mouse_genomes_project 7 9848250 9849165 + MGP_C3HHeJ_P0081205 Vmn1r82 protein_coding protein_coding MGP_C3HHeJ_T0084512.1 MGP_C3HHeJ_G0032192.1 mouse_genomes_project 7 90958665 90993554 + MGP_C3HHeJ_P0084512 Ctsc protein_coding protein_coding MGP_C3HHeJ_T0084513.1 MGP_C3HHeJ_G0032192.1 mouse_genomes_project 7 90958714 90990687 + MGP_C3HHeJ_P0084513 Ctsc protein_coding protein_coding MGP_C3HHeJ_T0084514.1 MGP_C3HHeJ_G0032192.1 mouse_genomes_project 7 90958718 90964350 + Ctsc protein_coding retained_intron MGP_C3HHeJ_T0084515.1 MGP_C3HHeJ_G0032192.1 mouse_genomes_project 7 90958718 90973958 + Ctsc protein_coding retained_intron MGP_C3HHeJ_T0084516.1 MGP_C3HHeJ_G0032192.1 mouse_genomes_project 7 90979465 90984972 + Ctsc protein_coding retained_intron MGP_C3HHeJ_T0100833.1 MGP_C3HHeJ_G0039027.1 mouse_genomes_project 7 61318654 61318721 - Snord64 snoRNA snoRNA MGP_C3HHeJ_T0102248.1 MGP_C3HHeJ_G0040211.1 mouse_genomes_project 7 49029367 49422395 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099577.1 MGP_C3HHeJ_G0037771.1 mouse_genomes_project 7 54515244 54515352 + Gm22444 snRNA snRNA MGP_C3HHeJ_T0005237.1 MGP_C3HHeJ_G0004435.1 mouse_genomes_project 7 146306289 146309971 - Gm16982 antisense antisense MGP_C3HHeJ_T0084749.1 MGP_C3HHeJ_G0032250.1 mouse_genomes_project 7 102438495 102446566 + MGP_C3HHeJ_P0084749 Klhl35 protein_coding protein_coding MGP_C3HHeJ_T0084750.1 MGP_C3HHeJ_G0032250.1 mouse_genomes_project 7 102441442 102444261 + MGP_C3HHeJ_P0084750 Klhl35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084751.1 MGP_C3HHeJ_G0032250.1 mouse_genomes_project 7 102442427 102444348 + Klhl35 protein_coding retained_intron MGP_C3HHeJ_T0084752.1 MGP_C3HHeJ_G0032250.1 mouse_genomes_project 7 102444300 102446148 + MGP_C3HHeJ_P0084752 Klhl35 protein_coding protein_coding MGP_C3HHeJ_T0008824.1 MGP_C3HHeJ_G0007118.1 mouse_genomes_project 7 74817862 74818167 - Gm28745 lincRNA lincRNA MGP_C3HHeJ_T0084652.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100476511 100479601 + Rsf1 protein_coding retained_intron MGP_C3HHeJ_T0084653.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100476519 100591883 + Rsf1 protein_coding retained_intron MGP_C3HHeJ_T0084654.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100476519 100598223 + MGP_C3HHeJ_P0084654 Rsf1 protein_coding protein_coding MGP_C3HHeJ_T0084655.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100476529 100538910 + MGP_C3HHeJ_P0084655 Rsf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084656.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100556826 100560447 + Rsf1 protein_coding retained_intron MGP_C3HHeJ_T0084657.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100562069 100592071 + MGP_C3HHeJ_P0084657 Rsf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084658.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100569883 100581602 + Rsf1 protein_coding retained_intron MGP_C3HHeJ_T0084659.1 MGP_C3HHeJ_G0032228.1 mouse_genomes_project 7 100570238 100586182 + MGP_C3HHeJ_P0084659 Rsf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081728.1 MGP_C3HHeJ_G0031509.1 mouse_genomes_project 7 21855509 21874370 + protein_coding processed_transcript MGP_C3HHeJ_T0008849.1 MGP_C3HHeJ_G0007138.1 mouse_genomes_project 7 81166748 81169127 + 5330411O13Rik lincRNA lincRNA MGP_C3HHeJ_T0102158.1 MGP_C3HHeJ_G0040122.1 mouse_genomes_project 7 9399418 9400383 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084479.1 MGP_C3HHeJ_G0032171.1 mouse_genomes_project 7 88900339 88907422 - MGP_C3HHeJ_P0084479 Olfr309 protein_coding protein_coding MGP_C3HHeJ_T0084480.1 MGP_C3HHeJ_G0032171.1 mouse_genomes_project 7 88900339 88901266 - MGP_C3HHeJ_P0084480 Olfr309 protein_coding protein_coding MGP_C3HHeJ_T0083264.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45893688 45913506 + MGP_C3HHeJ_P0083264 Il4i1 protein_coding protein_coding MGP_C3HHeJ_T0083265.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45893970 45923300 + MGP_C3HHeJ_P0083265 Il4i1 protein_coding protein_coding MGP_C3HHeJ_T0083266.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45893987 45915647 + Il4i1 protein_coding processed_transcript MGP_C3HHeJ_T0083267.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45918782 45923305 + MGP_C3HHeJ_P0083267 Il4i1 protein_coding protein_coding MGP_C3HHeJ_T0083268.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45918786 45920792 + Il4i1 protein_coding retained_intron MGP_C3HHeJ_T0083269.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45921186 45922277 + Il4i1 protein_coding retained_intron MGP_C3HHeJ_T0083270.1 MGP_C3HHeJ_G0031886.1 mouse_genomes_project 7 45921693 45922264 + MGP_C3HHeJ_P0083270 Il4i1 protein_coding protein_coding MGP_C3HHeJ_T0082203.1 MGP_C3HHeJ_G0031637.1 mouse_genomes_project 7 27241150 27243976 - MGP_C3HHeJ_P0082203 protein_coding protein_coding MGP_C3HHeJ_T0084389.1 MGP_C3HHeJ_G0032140.1 mouse_genomes_project 7 84303468 84341796 - MGP_C3HHeJ_P0084389 Btbd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081719.1 MGP_C3HHeJ_G0031504.1 mouse_genomes_project 7 18315830 18332097 - MGP_C3HHeJ_P0081719 Pvr protein_coding protein_coding MGP_C3HHeJ_T0081720.1 MGP_C3HHeJ_G0031504.1 mouse_genomes_project 7 18317326 18321907 - Pvr protein_coding retained_intron MGP_C3HHeJ_T0081721.1 MGP_C3HHeJ_G0031504.1 mouse_genomes_project 7 18326605 18332050 - Pvr protein_coding retained_intron MGP_C3HHeJ_T0081722.1 MGP_C3HHeJ_G0031504.1 mouse_genomes_project 7 18328112 18332050 - Pvr protein_coding retained_intron MGP_C3HHeJ_T0015616.1 MGP_C3HHeJ_G0013720.1 mouse_genomes_project 7 57508953 57509663 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084999.1 MGP_C3HHeJ_G0032301.1 mouse_genomes_project 7 105262078 105275370 + MGP_C3HHeJ_P0084999 Trpc2 protein_coding protein_coding MGP_C3HHeJ_T0002272.1 MGP_C3HHeJ_G0002192.1 mouse_genomes_project 7 131505321 131506723 + TEC TEC MGP_C3HHeJ_T0085557.1 MGP_C3HHeJ_G0032570.1 mouse_genomes_project 7 116506613 116510143 + MGP_C3HHeJ_P0085557 Rassf10 protein_coding protein_coding MGP_C3HHeJ_T0008778.1 MGP_C3HHeJ_G0007083.1 mouse_genomes_project 7 41375948 41385183 + Gm28307 lincRNA lincRNA MGP_C3HHeJ_T0083418.1 MGP_C3HHeJ_G0031929.1 mouse_genomes_project 7 46543656 46569296 + MGP_C3HHeJ_P0083418 Gys1 protein_coding protein_coding MGP_C3HHeJ_T0083419.1 MGP_C3HHeJ_G0031929.1 mouse_genomes_project 7 46543689 46568507 + MGP_C3HHeJ_P0083419 Gys1 protein_coding protein_coding MGP_C3HHeJ_T0083420.1 MGP_C3HHeJ_G0031929.1 mouse_genomes_project 7 46560252 46564475 + Gys1 protein_coding processed_transcript MGP_C3HHeJ_T0083421.1 MGP_C3HHeJ_G0031929.1 mouse_genomes_project 7 46560378 46564499 + Gys1 protein_coding processed_transcript MGP_C3HHeJ_T0083422.1 MGP_C3HHeJ_G0031929.1 mouse_genomes_project 7 46560901 46567999 + Gys1 protein_coding retained_intron MGP_C3HHeJ_T0083423.1 MGP_C3HHeJ_G0031929.1 mouse_genomes_project 7 46563672 46564764 + Gys1 protein_coding retained_intron MGP_C3HHeJ_T0002224.1 MGP_C3HHeJ_G0002144.1 mouse_genomes_project 7 77774050 77777878 + TEC TEC MGP_C3HHeJ_T0011586.1 MGP_C3HHeJ_G0009719.1 mouse_genomes_project 7 24771087 24771194 + Gm23921 misc_RNA misc_RNA MGP_C3HHeJ_T0081662.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 17997717 18021930 - Relb protein_coding retained_intron MGP_C3HHeJ_T0081663.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 17997717 18021930 - Relb protein_coding retained_intron MGP_C3HHeJ_T0081664.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 17997717 18021930 - Relb protein_coding retained_intron MGP_C3HHeJ_T0081665.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 17997717 18021930 - MGP_C3HHeJ_P0081665 Relb protein_coding protein_coding MGP_C3HHeJ_T0081666.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 17997717 18021930 - MGP_C3HHeJ_P0081666 Relb protein_coding protein_coding MGP_C3HHeJ_T0081667.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 17997723 18021930 - MGP_C3HHeJ_P0081667 Relb protein_coding protein_coding MGP_C3HHeJ_T0081668.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 18007911 18021276 - Relb protein_coding processed_transcript MGP_C3HHeJ_T0081669.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 18009305 18020965 - Relb protein_coding processed_transcript MGP_C3HHeJ_T0081670.1 MGP_C3HHeJ_G0031490.1 mouse_genomes_project 7 18009369 18020926 - Relb protein_coding processed_transcript MGP_C3HHeJ_T0081718.1 MGP_C3HHeJ_G0031503.1 mouse_genomes_project 7 18288630 18300884 - MGP_C3HHeJ_P0081718 Ceacam19 protein_coding protein_coding MGP_C3HHeJ_T0002239.1 MGP_C3HHeJ_G0002159.1 mouse_genomes_project 7 81892575 81894923 + TEC TEC MGP_C3HHeJ_T0084550.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 92996369 93105399 + MGP_C3HHeJ_P0084550 Sytl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084551.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93044417 93106291 + MGP_C3HHeJ_P0084551 Sytl2 protein_coding protein_coding MGP_C3HHeJ_T0084552.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93044417 93106291 + MGP_C3HHeJ_P0084552 Sytl2 protein_coding protein_coding MGP_C3HHeJ_T0084553.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93044417 93106291 + MGP_C3HHeJ_P0084553 Sytl2 protein_coding protein_coding MGP_C3HHeJ_T0084554.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93044417 93106291 + MGP_C3HHeJ_P0084554 Sytl2 protein_coding protein_coding MGP_C3HHeJ_T0084555.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93076898 93106291 + Sytl2 protein_coding processed_transcript MGP_C3HHeJ_T0084556.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93076920 93106291 + Sytl2 protein_coding processed_transcript MGP_C3HHeJ_T0084557.1 MGP_C3HHeJ_G0032205.1 mouse_genomes_project 7 93093950 93106291 + Sytl2 protein_coding processed_transcript MGP_C3HHeJ_T0081462.1 MGP_C3HHeJ_G0031423.1 mouse_genomes_project 7 14913512 14917924 + MGP_C3HHeJ_P0081462 Ptgir protein_coding protein_coding MGP_C3HHeJ_T0081463.1 MGP_C3HHeJ_G0031423.1 mouse_genomes_project 7 14913536 14917919 + MGP_C3HHeJ_P0081463 Ptgir protein_coding protein_coding MGP_C3HHeJ_T0081570.1 MGP_C3HHeJ_G0031462.1 mouse_genomes_project 7 17458347 17478322 - MGP_C3HHeJ_P0081570 Gm4969 protein_coding protein_coding MGP_C3HHeJ_T0081571.1 MGP_C3HHeJ_G0031462.1 mouse_genomes_project 7 17460852 17478295 - MGP_C3HHeJ_P0081571 Gm4969 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008721.1 MGP_C3HHeJ_G0007036.1 mouse_genomes_project 7 10532319 10534908 + Gm29638 lincRNA lincRNA MGP_C3HHeJ_T0084473.1 MGP_C3HHeJ_G0032165.1 mouse_genomes_project 7 87439841 87506717 + MGP_C3HHeJ_P0084473 Olfr290 protein_coding protein_coding MGP_C3HHeJ_T0010851.1 MGP_C3HHeJ_G0008984.1 mouse_genomes_project 7 148783373 148783467 + Mir6404 miRNA miRNA MGP_C3HHeJ_T0100841.1 MGP_C3HHeJ_G0039035.1 mouse_genomes_project 7 91025796 91025929 + Gm25345 snoRNA snoRNA MGP_C3HHeJ_T0086997.1 MGP_C3HHeJ_G0032867.1 mouse_genomes_project 7 144802956 144804014 - MGP_C3HHeJ_P0086997 Olfr524 protein_coding protein_coding MGP_C3HHeJ_T0102296.1 MGP_C3HHeJ_G0040259.1 mouse_genomes_project 7 106164391 106165276 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081931.1 MGP_C3HHeJ_G0031565.1 mouse_genomes_project 7 24118178 24120590 - MGP_C3HHeJ_P0081931 Pafah1b3 protein_coding protein_coding MGP_C3HHeJ_T0081932.1 MGP_C3HHeJ_G0031565.1 mouse_genomes_project 7 24118186 24119840 - Pafah1b3 protein_coding retained_intron MGP_C3HHeJ_T0081933.1 MGP_C3HHeJ_G0031565.1 mouse_genomes_project 7 24118496 24121020 - MGP_C3HHeJ_P0081933 Pafah1b3 protein_coding protein_coding MGP_C3HHeJ_T0081934.1 MGP_C3HHeJ_G0031565.1 mouse_genomes_project 7 24119103 24121075 - MGP_C3HHeJ_P0081934 Pafah1b3 protein_coding protein_coding MGP_C3HHeJ_T0081935.1 MGP_C3HHeJ_G0031565.1 mouse_genomes_project 7 24119757 24121059 - Pafah1b3 protein_coding retained_intron MGP_C3HHeJ_T0081936.1 MGP_C3HHeJ_G0031565.1 mouse_genomes_project 7 24120011 24121072 - Pafah1b3 protein_coding processed_transcript MGP_C3HHeJ_T0087017.1 MGP_C3HHeJ_G0032885.1 mouse_genomes_project 7 145323705 145324808 + MGP_C3HHeJ_P0087017 Olfr541 protein_coding protein_coding MGP_C3HHeJ_T0087031.1 MGP_C3HHeJ_G0032892.1 mouse_genomes_project 7 145482274 145485274 - MGP_C3HHeJ_P0087031 Bet1l protein_coding protein_coding MGP_C3HHeJ_T0085126.1 MGP_C3HHeJ_G0032392.1 mouse_genomes_project 7 107326164 107327103 + MGP_C3HHeJ_P0085126 Olfr641 protein_coding protein_coding MGP_C3HHeJ_T0082191.1 MGP_C3HHeJ_G0031632.1 mouse_genomes_project 7 27068390 27090931 - MGP_C3HHeJ_P0082191 Zfp974 protein_coding protein_coding MGP_C3HHeJ_T0083487.1 MGP_C3HHeJ_G0031946.1 mouse_genomes_project 7 46842208 46846984 + MGP_C3HHeJ_P0083487 Car11 protein_coding protein_coding MGP_C3HHeJ_T0102295.1 MGP_C3HHeJ_G0040258.1 mouse_genomes_project 7 105762732 105763667 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018187.1 MGP_C3HHeJ_G0015449.1 mouse_genomes_project 7 127861570 127871361 - Gm26974 processed_transcript lincRNA MGP_C3HHeJ_T0018188.1 MGP_C3HHeJ_G0015449.1 mouse_genomes_project 7 127868991 127870975 - Gm26974 processed_transcript lincRNA MGP_C3HHeJ_T0018189.1 MGP_C3HHeJ_G0015449.1 mouse_genomes_project 7 127868993 127870479 - Gm26974 processed_transcript retained_intron MGP_C3HHeJ_T0002263.1 MGP_C3HHeJ_G0002183.1 mouse_genomes_project 7 126564353 126565981 - TEC TEC MGP_C3HHeJ_T0010736.1 MGP_C3HHeJ_G0008869.1 mouse_genomes_project 7 112993 113075 + Mir291a miRNA miRNA MGP_C3HHeJ_T0081429.1 MGP_C3HHeJ_G0031418.1 mouse_genomes_project 7 14809390 14816858 - MGP_C3HHeJ_P0081429 Fkrp protein_coding protein_coding MGP_C3HHeJ_T0081430.1 MGP_C3HHeJ_G0031418.1 mouse_genomes_project 7 14811750 14815646 - MGP_C3HHeJ_P0081430 Fkrp protein_coding protein_coding MGP_C3HHeJ_T0081431.1 MGP_C3HHeJ_G0031418.1 mouse_genomes_project 7 14813258 14815818 - Fkrp protein_coding retained_intron MGP_C3HHeJ_T0081432.1 MGP_C3HHeJ_G0031418.1 mouse_genomes_project 7 14814872 14816858 - Fkrp protein_coding retained_intron MGP_C3HHeJ_T0008882.1 MGP_C3HHeJ_G0007155.1 mouse_genomes_project 7 95777448 95876965 + Gm26862 lincRNA lincRNA MGP_C3HHeJ_T0002243.1 MGP_C3HHeJ_G0002163.1 mouse_genomes_project 7 82445794 82447690 + TEC TEC MGP_C3HHeJ_T0081942.1 MGP_C3HHeJ_G0031568.1 mouse_genomes_project 7 24141301 24193138 + MGP_C3HHeJ_P0081942 Megf8 protein_coding protein_coding MGP_C3HHeJ_T0081943.1 MGP_C3HHeJ_G0031568.1 mouse_genomes_project 7 24173272 24193135 + Megf8 protein_coding retained_intron MGP_C3HHeJ_T0008967.1 MGP_C3HHeJ_G0007209.1 mouse_genomes_project 7 137985254 137986631 - Gm28747 lincRNA lincRNA MGP_C3HHeJ_T0082195.1 MGP_C3HHeJ_G0031635.1 mouse_genomes_project 7 27179614 27188009 - MGP_C3HHeJ_P0082195 Psmc4 protein_coding protein_coding MGP_C3HHeJ_T0082196.1 MGP_C3HHeJ_G0031635.1 mouse_genomes_project 7 27179623 27184930 - Psmc4 protein_coding retained_intron MGP_C3HHeJ_T0082197.1 MGP_C3HHeJ_G0031635.1 mouse_genomes_project 7 27179624 27187964 - Psmc4 protein_coding retained_intron MGP_C3HHeJ_T0082198.1 MGP_C3HHeJ_G0031635.1 mouse_genomes_project 7 27180495 27185257 - Psmc4 protein_coding retained_intron MGP_C3HHeJ_T0082199.1 MGP_C3HHeJ_G0031635.1 mouse_genomes_project 7 27180572 27185426 - Psmc4 protein_coding processed_transcript MGP_C3HHeJ_T0082200.1 MGP_C3HHeJ_G0031635.1 mouse_genomes_project 7 27185164 27187964 - Psmc4 protein_coding retained_intron MGP_C3HHeJ_T0083941.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614072 68632425 + MGP_C3HHeJ_P0083941 Lins1 protein_coding protein_coding MGP_C3HHeJ_T0083942.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614077 68638819 + MGP_C3HHeJ_P0083942 Lins1 protein_coding protein_coding MGP_C3HHeJ_T0083943.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614083 68632289 + MGP_C3HHeJ_P0083943 Lins1 protein_coding protein_coding MGP_C3HHeJ_T0083944.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614132 68633970 + Lins1 protein_coding retained_intron MGP_C3HHeJ_T0083945.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614141 68641328 + MGP_C3HHeJ_P0083945 Lins1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083946.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614141 68638816 + MGP_C3HHeJ_P0083946 Lins1 protein_coding protein_coding MGP_C3HHeJ_T0083947.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68614154 68638819 + MGP_C3HHeJ_P0083947 Lins1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083948.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68632097 68638759 + MGP_C3HHeJ_P0083948 Lins1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083949.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68632245 68634443 + MGP_C3HHeJ_P0083949 Lins1 protein_coding protein_coding MGP_C3HHeJ_T0083950.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68632390 68634632 + MGP_C3HHeJ_P0083950 Lins1 protein_coding protein_coding MGP_C3HHeJ_T0083951.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68633476 68637922 + MGP_C3HHeJ_P0083951 Lins1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083952.1 MGP_C3HHeJ_G0032058.1 mouse_genomes_project 7 68634213 68641326 + Lins1 protein_coding retained_intron MGP_C3HHeJ_T0084121.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81745029 81760432 - MGP_C3HHeJ_P0084121 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0084122.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81745030 81760343 - MGP_C3HHeJ_P0084122 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0084123.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81745704 81747874 - Rlbp1 protein_coding retained_intron MGP_C3HHeJ_T0084124.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81746080 81757488 - MGP_C3HHeJ_P0084124 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0084125.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81747554 81759925 - MGP_C3HHeJ_P0084125 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0084126.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81752692 81759989 - MGP_C3HHeJ_P0084126 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0084127.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81754604 81759858 - MGP_C3HHeJ_P0084127 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0084128.1 MGP_C3HHeJ_G0032091.1 mouse_genomes_project 7 81757238 81760296 - MGP_C3HHeJ_P0084128 Rlbp1 protein_coding protein_coding MGP_C3HHeJ_T0008956.1 MGP_C3HHeJ_G0007201.1 mouse_genomes_project 7 133571077 133576745 - Gm44591 lincRNA lincRNA MGP_C3HHeJ_T0010762.1 MGP_C3HHeJ_G0008895.1 mouse_genomes_project 7 26269458 26269578 + Mir1191 miRNA miRNA MGP_C3HHeJ_T0083722.1 MGP_C3HHeJ_G0032013.1 mouse_genomes_project 7 53575008 53579052 - MGP_C3HHeJ_P0083722 1700015G11Rik protein_coding protein_coding MGP_C3HHeJ_T0083723.1 MGP_C3HHeJ_G0032013.1 mouse_genomes_project 7 53575010 53579027 - MGP_C3HHeJ_P0083723 1700015G11Rik protein_coding protein_coding MGP_C3HHeJ_T0083724.1 MGP_C3HHeJ_G0032013.1 mouse_genomes_project 7 53575012 53579019 - MGP_C3HHeJ_P0083724 1700015G11Rik protein_coding protein_coding MGP_C3HHeJ_T0083725.1 MGP_C3HHeJ_G0032013.1 mouse_genomes_project 7 53575015 53579006 - MGP_C3HHeJ_P0083725 1700015G11Rik protein_coding protein_coding MGP_C3HHeJ_T0086050.1 MGP_C3HHeJ_G0032676.1 mouse_genomes_project 7 130370563 130376982 - Cd19 protein_coding retained_intron MGP_C3HHeJ_T0086051.1 MGP_C3HHeJ_G0032676.1 mouse_genomes_project 7 130370564 130377003 - MGP_C3HHeJ_P0086051 Cd19 protein_coding protein_coding MGP_C3HHeJ_T0086052.1 MGP_C3HHeJ_G0032676.1 mouse_genomes_project 7 130370564 130376986 - MGP_C3HHeJ_P0086052 Cd19 protein_coding protein_coding MGP_C3HHeJ_T0086053.1 MGP_C3HHeJ_G0032676.1 mouse_genomes_project 7 130371475 130371910 - Cd19 protein_coding retained_intron MGP_C3HHeJ_T0086054.1 MGP_C3HHeJ_G0032676.1 mouse_genomes_project 7 130375775 130376664 - Cd19 protein_coding retained_intron MGP_C3HHeJ_T0002166.1 MGP_C3HHeJ_G0002087.1 mouse_genomes_project 7 34470561 34473192 - TEC TEC MGP_C3HHeJ_T0015494.1 MGP_C3HHeJ_G0013598.1 mouse_genomes_project 7 1581579 1582180 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082044.1 MGP_C3HHeJ_G0031597.1 mouse_genomes_project 7 25759521 25776159 + MGP_C3HHeJ_P0082044 Cyp2b19 protein_coding protein_coding MGP_C3HHeJ_T0082045.1 MGP_C3HHeJ_G0031597.1 mouse_genomes_project 7 25759542 25769165 + Cyp2b19 protein_coding retained_intron MGP_C3HHeJ_T0082046.1 MGP_C3HHeJ_G0031597.1 mouse_genomes_project 7 25770083 25774920 + Cyp2b19 protein_coding retained_intron MGP_C3HHeJ_T0082577.1 MGP_C3HHeJ_G0031731.1 mouse_genomes_project 7 29955716 29958801 - MGP_C3HHeJ_P0082577 Psenen protein_coding protein_coding MGP_C3HHeJ_T0081185.1 MGP_C3HHeJ_G0031328.1 mouse_genomes_project 7 7783194 7784154 - MGP_C3HHeJ_P0081185 Vmn1r68 protein_coding protein_coding MGP_C3HHeJ_T0099581.1 MGP_C3HHeJ_G0037775.1 mouse_genomes_project 7 65449138 65449239 + Gm22228 snRNA snRNA MGP_C3HHeJ_T0008949.1 MGP_C3HHeJ_G0007195.1 mouse_genomes_project 7 131481695 131486592 + Gm45184 lincRNA lincRNA MGP_C3HHeJ_T0010778.1 MGP_C3HHeJ_G0008911.1 mouse_genomes_project 7 46220413 46220478 + Mir150 miRNA miRNA MGP_C3HHeJ_T0084455.1 MGP_C3HHeJ_G0032159.1 mouse_genomes_project 7 86464632 86479135 + Mesdc2 protein_coding processed_transcript MGP_C3HHeJ_T0084456.1 MGP_C3HHeJ_G0032159.1 mouse_genomes_project 7 86473346 86482714 + MGP_C3HHeJ_P0084456 Mesdc2 protein_coding protein_coding MGP_C3HHeJ_T0084457.1 MGP_C3HHeJ_G0032159.1 mouse_genomes_project 7 86473348 86478962 + MGP_C3HHeJ_P0084457 Mesdc2 protein_coding protein_coding MGP_C3HHeJ_T0084458.1 MGP_C3HHeJ_G0032159.1 mouse_genomes_project 7 86473676 86479275 + MGP_C3HHeJ_P0084458 Mesdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015573.1 MGP_C3HHeJ_G0013677.1 mouse_genomes_project 7 34062995 34063138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008880.1 MGP_C3HHeJ_G0007153.1 mouse_genomes_project 7 95400757 95408255 + Gm26944 lincRNA lincRNA MGP_C3HHeJ_T0082537.1 MGP_C3HHeJ_G0031717.1 mouse_genomes_project 7 29705284 29707774 - MGP_C3HHeJ_P0082537 Sdhaf1 protein_coding protein_coding MGP_C3HHeJ_T0082201.1 MGP_C3HHeJ_G0031636.1 mouse_genomes_project 7 27209013 27258306 + MGP_C3HHeJ_P0082201 Fcgbp protein_coding protein_coding MGP_C3HHeJ_T0082202.1 MGP_C3HHeJ_G0031636.1 mouse_genomes_project 7 27209355 27227704 + Fcgbp protein_coding retained_intron MGP_C3HHeJ_T0084977.1 MGP_C3HHeJ_G0032297.1 mouse_genomes_project 7 105183085 105186136 - MGP_C3HHeJ_P0084977 Il18bp protein_coding protein_coding MGP_C3HHeJ_T0086591.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375180 132376241 + Slc5a2 protein_coding retained_intron MGP_C3HHeJ_T0086592.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375199 132381816 + MGP_C3HHeJ_P0086592 Slc5a2 protein_coding protein_coding MGP_C3HHeJ_T0086593.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375201 132381606 + MGP_C3HHeJ_P0086593 Slc5a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086594.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375206 132378663 + MGP_C3HHeJ_P0086594 Slc5a2 protein_coding protein_coding MGP_C3HHeJ_T0086595.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375218 132378667 + MGP_C3HHeJ_P0086595 Slc5a2 protein_coding protein_coding MGP_C3HHeJ_T0086596.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375823 132379450 + MGP_C3HHeJ_P0086596 Slc5a2 protein_coding protein_coding MGP_C3HHeJ_T0086597.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375866 132377002 + MGP_C3HHeJ_P0086597 Slc5a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086598.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132375893 132376298 + Slc5a2 protein_coding retained_intron MGP_C3HHeJ_T0086599.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132376481 132378516 + Slc5a2 protein_coding retained_intron MGP_C3HHeJ_T0086600.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132376914 132379373 + MGP_C3HHeJ_P0086600 Slc5a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086601.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132378476 132381573 + MGP_C3HHeJ_P0086601 Slc5a2 protein_coding protein_coding MGP_C3HHeJ_T0086602.1 MGP_C3HHeJ_G0032777.1 mouse_genomes_project 7 132379959 132381573 + MGP_C3HHeJ_P0086602 Slc5a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084105.1 MGP_C3HHeJ_G0032088.1 mouse_genomes_project 7 81472855 81489984 - MGP_C3HHeJ_P0084105 Hapln3 protein_coding protein_coding MGP_C3HHeJ_T0084106.1 MGP_C3HHeJ_G0032088.1 mouse_genomes_project 7 81473491 81489961 - MGP_C3HHeJ_P0084106 Hapln3 protein_coding protein_coding MGP_C3HHeJ_T0084107.1 MGP_C3HHeJ_G0032088.1 mouse_genomes_project 7 81474774 81489979 - MGP_C3HHeJ_P0084107 Hapln3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084108.1 MGP_C3HHeJ_G0032088.1 mouse_genomes_project 7 81479508 81487624 - Hapln3 protein_coding processed_transcript MGP_C3HHeJ_T0015539.1 MGP_C3HHeJ_G0013643.1 mouse_genomes_project 7 23640421 23640947 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085138.1 MGP_C3HHeJ_G0032403.1 mouse_genomes_project 7 107482693 107490301 - MGP_C3HHeJ_P0085138 Olfr649 protein_coding protein_coding MGP_C3HHeJ_T0085139.1 MGP_C3HHeJ_G0032403.1 mouse_genomes_project 7 107482694 107483633 - MGP_C3HHeJ_P0085139 Olfr649 protein_coding protein_coding MGP_C3HHeJ_T0008881.1 MGP_C3HHeJ_G0007154.1 mouse_genomes_project 7 95494037 95497858 + Gm26981 lincRNA lincRNA MGP_C3HHeJ_T0085673.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121773083 121784863 - MGP_C3HHeJ_P0085673 Rps15a protein_coding protein_coding MGP_C3HHeJ_T0085674.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121773089 121783937 - MGP_C3HHeJ_P0085674 Rps15a protein_coding protein_coding MGP_C3HHeJ_T0085675.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121777756 121784352 - MGP_C3HHeJ_P0085675 Rps15a protein_coding protein_coding MGP_C3HHeJ_T0085676.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121777861 121784235 - MGP_C3HHeJ_P0085676 Rps15a protein_coding protein_coding MGP_C3HHeJ_T0085677.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121778355 121783909 - Rps15a protein_coding retained_intron MGP_C3HHeJ_T0085678.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121778690 121784804 - MGP_C3HHeJ_P0085678 Rps15a protein_coding protein_coding MGP_C3HHeJ_T0085679.1 MGP_C3HHeJ_G0032592.1 mouse_genomes_project 7 121783465 121784803 - MGP_C3HHeJ_P0085679 Rps15a protein_coding protein_coding MGP_C3HHeJ_T0102221.1 MGP_C3HHeJ_G0040184.1 mouse_genomes_project 7 33992452 34000958 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015636.1 MGP_C3HHeJ_G0013740.1 mouse_genomes_project 7 75161769 75162769 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086162.1 MGP_C3HHeJ_G0032694.1 mouse_genomes_project 7 130762705 130772838 + MGP_C3HHeJ_P0086162 Gdpd3 protein_coding protein_coding MGP_C3HHeJ_T0086163.1 MGP_C3HHeJ_G0032694.1 mouse_genomes_project 7 130763216 130764584 + Gdpd3 protein_coding retained_intron MGP_C3HHeJ_T0086164.1 MGP_C3HHeJ_G0032694.1 mouse_genomes_project 7 130763218 130765033 + Gdpd3 protein_coding retained_intron MGP_C3HHeJ_T0086165.1 MGP_C3HHeJ_G0032694.1 mouse_genomes_project 7 130763546 130764407 + Gdpd3 protein_coding retained_intron MGP_C3HHeJ_T0086166.1 MGP_C3HHeJ_G0032694.1 mouse_genomes_project 7 130764521 130767544 + Gdpd3 protein_coding retained_intron MGP_C3HHeJ_T0086167.1 MGP_C3HHeJ_G0032694.1 mouse_genomes_project 7 130764891 130772842 + Gdpd3 protein_coding retained_intron MGP_C3HHeJ_T0015605.1 MGP_C3HHeJ_G0013709.1 mouse_genomes_project 7 45340683 45341656 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008799.1 MGP_C3HHeJ_G0007100.1 mouse_genomes_project 7 67098635 67099191 - Gm45214 lincRNA lincRNA MGP_C3HHeJ_T0008800.1 MGP_C3HHeJ_G0007100.1 mouse_genomes_project 7 67098638 67099251 - Gm45214 lincRNA lincRNA MGP_C3HHeJ_T0015505.1 MGP_C3HHeJ_G0013609.1 mouse_genomes_project 7 10148648 10150095 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102290.1 MGP_C3HHeJ_G0040253.1 mouse_genomes_project 7 88950158 88950786 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011592.1 MGP_C3HHeJ_G0009725.1 mouse_genomes_project 7 77191740 77192091 - Gm22326 misc_RNA misc_RNA MGP_C3HHeJ_T0083482.1 MGP_C3HHeJ_G0031943.1 mouse_genomes_project 7 46785464 46806566 - MGP_C3HHeJ_P0083482 Fut2 protein_coding protein_coding MGP_C3HHeJ_T0084700.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277351 101287848 - MGP_C3HHeJ_P0084700 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084701.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277351 101287888 - MGP_C3HHeJ_P0084701 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084702.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277351 101287848 - MGP_C3HHeJ_P0084702 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084703.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277351 101287852 - MGP_C3HHeJ_P0084703 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084704.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277469 101286639 - MGP_C3HHeJ_P0084704 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084705.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277469 101286639 - MGP_C3HHeJ_P0084705 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084706.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101277551 101287848 - MGP_C3HHeJ_P0084706 Tsku protein_coding protein_coding MGP_C3HHeJ_T0084707.1 MGP_C3HHeJ_G0032238.1 mouse_genomes_project 7 101280137 101286747 - Tsku protein_coding processed_transcript MGP_C3HHeJ_T0010811.1 MGP_C3HHeJ_G0008944.1 mouse_genomes_project 7 80321327 80321421 - Gm44358 miRNA miRNA MGP_C3HHeJ_T0084737.1 MGP_C3HHeJ_G0032244.1 mouse_genomes_project 7 101831759 102102925 - MGP_C3HHeJ_P0084737 Uvrag protein_coding protein_coding MGP_C3HHeJ_T0085195.1 MGP_C3HHeJ_G0032432.1 mouse_genomes_project 7 108303927 108304881 + MGP_C3HHeJ_P0085195 Olfr676 protein_coding protein_coding MGP_C3HHeJ_T0081946.1 MGP_C3HHeJ_G0031570.1 mouse_genomes_project 7 24206900 24224491 - MGP_C3HHeJ_P0081946 Lipe protein_coding protein_coding MGP_C3HHeJ_T0081947.1 MGP_C3HHeJ_G0031570.1 mouse_genomes_project 7 24206912 24227581 - MGP_C3HHeJ_P0081947 Lipe protein_coding protein_coding MGP_C3HHeJ_T0081948.1 MGP_C3HHeJ_G0031570.1 mouse_genomes_project 7 24212035 24213809 - MGP_C3HHeJ_P0081948 Lipe protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081949.1 MGP_C3HHeJ_G0031570.1 mouse_genomes_project 7 24212056 24212691 - Lipe protein_coding retained_intron MGP_C3HHeJ_T0081950.1 MGP_C3HHeJ_G0031570.1 mouse_genomes_project 7 24217443 24219360 - MGP_C3HHeJ_P0081950 Lipe protein_coding protein_coding MGP_C3HHeJ_T0081951.1 MGP_C3HHeJ_G0031570.1 mouse_genomes_project 7 24226329 24227580 - MGP_C3HHeJ_P0081951 Lipe protein_coding protein_coding MGP_C3HHeJ_T0086704.1 MGP_C3HHeJ_G0032791.1 mouse_genomes_project 7 134990311 135042701 + MGP_C3HHeJ_P0086704 Btbd16 protein_coding protein_coding MGP_C3HHeJ_T0010787.1 MGP_C3HHeJ_G0008920.1 mouse_genomes_project 7 63390089 63390168 - Gm25533 miRNA miRNA MGP_C3HHeJ_T0008747.1 MGP_C3HHeJ_G0007059.1 mouse_genomes_project 7 34550503 34640107 + Gm12766 lincRNA lincRNA MGP_C3HHeJ_T0087389.1 MGP_C3HHeJ_G0032963.1 mouse_genomes_project 7 147620425 147641179 + MGP_C3HHeJ_P0087389 protein_coding protein_coding MGP_C3HHeJ_T0087390.1 MGP_C3HHeJ_G0032963.1 mouse_genomes_project 7 147638423 147640378 + protein_coding processed_transcript MGP_C3HHeJ_T0084821.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103553932 103562587 + MGP_C3HHeJ_P0084821 Ucp2 protein_coding protein_coding MGP_C3HHeJ_T0084822.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103553959 103557515 + Ucp2 protein_coding retained_intron MGP_C3HHeJ_T0084823.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103554390 103557730 + MGP_C3HHeJ_P0084823 Ucp2 protein_coding protein_coding MGP_C3HHeJ_T0084824.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103554662 103557872 + MGP_C3HHeJ_P0084824 Ucp2 protein_coding protein_coding MGP_C3HHeJ_T0084825.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103556645 103558823 + MGP_C3HHeJ_P0084825 Ucp2 protein_coding protein_coding MGP_C3HHeJ_T0084826.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103557762 103559192 + Ucp2 protein_coding processed_transcript MGP_C3HHeJ_T0084827.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103557834 103559311 + Ucp2 protein_coding processed_transcript MGP_C3HHeJ_T0084828.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103558707 103559178 + Ucp2 protein_coding processed_transcript MGP_C3HHeJ_T0084829.1 MGP_C3HHeJ_G0032270.1 mouse_genomes_project 7 103558912 103559873 + Ucp2 protein_coding processed_transcript MGP_C3HHeJ_T0085762.1 MGP_C3HHeJ_G0032614.1 mouse_genomes_project 7 123445792 123451124 - MGP_C3HHeJ_P0085762 Thumpd1 protein_coding protein_coding MGP_C3HHeJ_T0083095.1 MGP_C3HHeJ_G0031842.1 mouse_genomes_project 7 44681904 44688180 + MGP_C3HHeJ_P0083095 Ctu1 protein_coding protein_coding MGP_C3HHeJ_T0085096.1 MGP_C3HHeJ_G0032364.1 mouse_genomes_project 7 106842857 106843814 + MGP_C3HHeJ_P0085096 Olfr618 protein_coding protein_coding MGP_C3HHeJ_T0086867.1 MGP_C3HHeJ_G0032833.1 mouse_genomes_project 7 140151746 140180456 - MGP_C3HHeJ_P0086867 Mki67 protein_coding protein_coding MGP_C3HHeJ_T0085374.1 MGP_C3HHeJ_G0032515.1 mouse_genomes_project 7 111733750 111734695 - MGP_C3HHeJ_P0085374 Olfr493 protein_coding protein_coding MGP_C3HHeJ_T0015488.1 MGP_C3HHeJ_G0013592.1 mouse_genomes_project 7 1138401 1139274 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087169.1 MGP_C3HHeJ_G0032923.1 mouse_genomes_project 7 146076638 146087511 + MGP_C3HHeJ_P0087169 Taldo1 protein_coding protein_coding MGP_C3HHeJ_T0087170.1 MGP_C3HHeJ_G0032923.1 mouse_genomes_project 7 146076682 146083666 + Taldo1 protein_coding retained_intron MGP_C3HHeJ_T0087171.1 MGP_C3HHeJ_G0032923.1 mouse_genomes_project 7 146084696 146086749 + Taldo1 protein_coding retained_intron MGP_C3HHeJ_T0102281.1 MGP_C3HHeJ_G0040244.1 mouse_genomes_project 7 88351836 88352453 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085431.1 MGP_C3HHeJ_G0032544.1 mouse_genomes_project 7 113175690 113179902 - MGP_C3HHeJ_P0085431 Ascl3 protein_coding protein_coding MGP_C3HHeJ_T0085279.1 MGP_C3HHeJ_G0032456.1 mouse_genomes_project 7 109024970 109030885 - MGP_C3HHeJ_P0085279 Rrp8 protein_coding protein_coding MGP_C3HHeJ_T0085280.1 MGP_C3HHeJ_G0032456.1 mouse_genomes_project 7 109025167 109031480 - MGP_C3HHeJ_P0085280 Rrp8 protein_coding protein_coding MGP_C3HHeJ_T0085281.1 MGP_C3HHeJ_G0032456.1 mouse_genomes_project 7 109025403 109026445 - Rrp8 protein_coding retained_intron MGP_C3HHeJ_T0085282.1 MGP_C3HHeJ_G0032456.1 mouse_genomes_project 7 109025769 109026827 - Rrp8 protein_coding processed_transcript MGP_C3HHeJ_T0085283.1 MGP_C3HHeJ_G0032456.1 mouse_genomes_project 7 109025769 109026710 - Rrp8 protein_coding retained_intron MGP_C3HHeJ_T0085284.1 MGP_C3HHeJ_G0032456.1 mouse_genomes_project 7 109027455 109030477 - Rrp8 protein_coding processed_transcript MGP_C3HHeJ_T0102276.1 MGP_C3HHeJ_G0040239.1 mouse_genomes_project 7 88066560 88066835 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082160.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26683264 26738424 + MGP_C3HHeJ_P0082160 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082161.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26683315 26737037 + MGP_C3HHeJ_P0082161 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082162.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26683937 26723242 + MGP_C3HHeJ_P0082162 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082163.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26684027 26729348 + MGP_C3HHeJ_P0082163 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082164.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26685115 26708387 + Akt2 protein_coding processed_transcript MGP_C3HHeJ_T0082165.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26688449 26710274 + MGP_C3HHeJ_P0082165 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082166.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26697395 26723266 + MGP_C3HHeJ_P0082166 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082167.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26697415 26737035 + MGP_C3HHeJ_P0082167 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082168.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26697456 26737051 + MGP_C3HHeJ_P0082168 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082169.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26699346 26729328 + MGP_C3HHeJ_P0082169 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082170.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26699602 26710327 + MGP_C3HHeJ_P0082170 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082171.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26700260 26735565 + MGP_C3HHeJ_P0082171 Akt2 protein_coding protein_coding MGP_C3HHeJ_T0082172.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26722921 26730898 + Akt2 protein_coding retained_intron MGP_C3HHeJ_T0082173.1 MGP_C3HHeJ_G0031624.1 mouse_genomes_project 7 26733447 26734838 + Akt2 protein_coding retained_intron MGP_C3HHeJ_T0015691.1 MGP_C3HHeJ_G0013795.1 mouse_genomes_project 7 107624255 107625385 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087121.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145895484 145941730 + MGP_C3HHeJ_P0087121 Phrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087122.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145895489 145941614 + MGP_C3HHeJ_P0087122 Phrf1 protein_coding protein_coding MGP_C3HHeJ_T0087123.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145900876 145924893 + MGP_C3HHeJ_P0087123 Phrf1 protein_coding protein_coding MGP_C3HHeJ_T0087124.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145911286 145941583 + MGP_C3HHeJ_P0087124 Phrf1 protein_coding protein_coding MGP_C3HHeJ_T0087125.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145933901 145937057 + Phrf1 protein_coding processed_transcript MGP_C3HHeJ_T0087126.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145934990 145936817 + Phrf1 protein_coding retained_intron MGP_C3HHeJ_T0087127.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145934991 145935874 + Phrf1 protein_coding retained_intron MGP_C3HHeJ_T0087128.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145938177 145941738 + MGP_C3HHeJ_P0087128 Phrf1 protein_coding protein_coding MGP_C3HHeJ_T0087129.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145938645 145939575 + Phrf1 protein_coding processed_transcript MGP_C3HHeJ_T0087130.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145939384 145941735 + MGP_C3HHeJ_P0087130 Phrf1 protein_coding protein_coding MGP_C3HHeJ_T0087131.1 MGP_C3HHeJ_G0032915.1 mouse_genomes_project 7 145940666 145941688 + Phrf1 protein_coding processed_transcript MGP_C3HHeJ_T0008718.1 MGP_C3HHeJ_G0007034.1 mouse_genomes_project 7 4260288 4260492 - lincRNA lincRNA MGP_C3HHeJ_T0002159.1 MGP_C3HHeJ_G0002080.1 mouse_genomes_project 7 15076808 15077714 + TEC TEC MGP_C3HHeJ_T0085404.1 MGP_C3HHeJ_G0032537.1 mouse_genomes_project 7 112558709 112602646 - MGP_C3HHeJ_P0085404 Lmo1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085405.1 MGP_C3HHeJ_G0032537.1 mouse_genomes_project 7 112558714 112597995 - MGP_C3HHeJ_P0085405 Lmo1 protein_coding protein_coding MGP_C3HHeJ_T0083368.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331230 46336438 - MGP_C3HHeJ_P0083368 Cd37 protein_coding protein_coding MGP_C3HHeJ_T0083369.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331234 46336413 - Cd37 protein_coding retained_intron MGP_C3HHeJ_T0083370.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331238 46336713 - MGP_C3HHeJ_P0083370 Cd37 protein_coding protein_coding MGP_C3HHeJ_T0083371.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331240 46333097 - Cd37 protein_coding processed_transcript MGP_C3HHeJ_T0083372.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331488 46334685 - Cd37 protein_coding processed_transcript MGP_C3HHeJ_T0083373.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331767 46336472 - MGP_C3HHeJ_P0083373 Cd37 protein_coding protein_coding MGP_C3HHeJ_T0083374.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46331947 46333056 - Cd37 protein_coding processed_transcript MGP_C3HHeJ_T0083375.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46332335 46336655 - MGP_C3HHeJ_P0083375 Cd37 protein_coding protein_coding MGP_C3HHeJ_T0083376.1 MGP_C3HHeJ_G0031918.1 mouse_genomes_project 7 46335331 46336394 - Cd37 protein_coding retained_intron MGP_C3HHeJ_T0085975.1 MGP_C3HHeJ_G0032663.1 mouse_genomes_project 7 127885468 128319259 + MGP_C3HHeJ_P0085975 Hs3st4 protein_coding protein_coding MGP_C3HHeJ_T0082803.1 MGP_C3HHeJ_G0031774.1 mouse_genomes_project 7 34089242 34092660 + MGP_C3HHeJ_P0082803 Scgb1b30 protein_coding protein_coding MGP_C3HHeJ_T0083317.1 MGP_C3HHeJ_G0031898.1 mouse_genomes_project 7 46086533 46093726 - MGP_C3HHeJ_P0083317 Bcl2l12 protein_coding protein_coding MGP_C3HHeJ_T0085428.1 MGP_C3HHeJ_G0032543.1 mouse_genomes_project 7 113159673 113172012 - MGP_C3HHeJ_P0085428 BC051019 protein_coding protein_coding MGP_C3HHeJ_T0085429.1 MGP_C3HHeJ_G0032543.1 mouse_genomes_project 7 113159676 113172076 - MGP_C3HHeJ_P0085429 BC051019 protein_coding protein_coding MGP_C3HHeJ_T0085430.1 MGP_C3HHeJ_G0032543.1 mouse_genomes_project 7 113163400 113169332 - MGP_C3HHeJ_P0085430 BC051019 protein_coding protein_coding MGP_C3HHeJ_T0083334.1 MGP_C3HHeJ_G0031907.1 mouse_genomes_project 7 46221044 46223082 - MGP_C3HHeJ_P0083334 Rps11 protein_coding protein_coding MGP_C3HHeJ_T0083820.1 MGP_C3HHeJ_G0032033.1 mouse_genomes_project 7 64271230 64273862 - MGP_C3HHeJ_P0083820 Peg12 protein_coding protein_coding MGP_C3HHeJ_T0081838.1 MGP_C3HHeJ_G0031548.1 mouse_genomes_project 7 23525989 23536449 + MGP_C3HHeJ_P0081838 Ceacam10 protein_coding protein_coding MGP_C3HHeJ_T0081839.1 MGP_C3HHeJ_G0031548.1 mouse_genomes_project 7 23525993 23536445 + MGP_C3HHeJ_P0081839 Ceacam10 protein_coding protein_coding MGP_C3HHeJ_T0081840.1 MGP_C3HHeJ_G0031548.1 mouse_genomes_project 7 23526046 23536450 + MGP_C3HHeJ_P0081840 Ceacam10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081841.1 MGP_C3HHeJ_G0031548.1 mouse_genomes_project 7 23534759 23536449 + Ceacam10 protein_coding retained_intron MGP_C3HHeJ_T0081313.1 MGP_C3HHeJ_G0031376.1 mouse_genomes_project 7 11425254 11477270 + MGP_C3HHeJ_P0081313 Sult2a2 protein_coding protein_coding MGP_C3HHeJ_T0101271.1 MGP_C3HHeJ_G0039380.1 mouse_genomes_project 7 132430533 132458475 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101272.1 MGP_C3HHeJ_G0039380.1 mouse_genomes_project 7 132457511 132457690 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0085072.1 MGP_C3HHeJ_G0032341.1 mouse_genomes_project 7 106280446 106281406 + MGP_C3HHeJ_P0085072 Olfr583 protein_coding protein_coding MGP_C3HHeJ_T0015700.1 MGP_C3HHeJ_G0013804.1 mouse_genomes_project 7 118286982 118288109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085373.1 MGP_C3HHeJ_G0032514.1 mouse_genomes_project 7 111704692 111705625 + MGP_C3HHeJ_P0085373 Olfr491 protein_coding protein_coding MGP_C3HHeJ_T0011594.1 MGP_C3HHeJ_G0009727.1 mouse_genomes_project 7 81721794 81722052 - Gm24224 misc_RNA misc_RNA MGP_C3HHeJ_T0102240.1 MGP_C3HHeJ_G0040203.1 mouse_genomes_project 7 45240584 45242195 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002172.1 MGP_C3HHeJ_G0002093.1 mouse_genomes_project 7 36961757 36965742 + TEC TEC MGP_C3HHeJ_T0085186.1 MGP_C3HHeJ_G0032423.1 mouse_genomes_project 7 107869718 107870687 + MGP_C3HHeJ_P0085186 Olfr659 protein_coding protein_coding MGP_C3HHeJ_T0082152.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26644162 26672137 + MGP_C3HHeJ_P0082152 2310022A10Rik protein_coding protein_coding MGP_C3HHeJ_T0082153.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26644196 26664756 + MGP_C3HHeJ_P0082153 2310022A10Rik protein_coding protein_coding MGP_C3HHeJ_T0082154.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26644199 26645001 + 2310022A10Rik protein_coding processed_transcript MGP_C3HHeJ_T0082155.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26644215 26672137 + MGP_C3HHeJ_P0082155 2310022A10Rik protein_coding protein_coding MGP_C3HHeJ_T0082156.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26650078 26672132 + MGP_C3HHeJ_P0082156 2310022A10Rik protein_coding protein_coding MGP_C3HHeJ_T0082157.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26650099 26663365 + 2310022A10Rik protein_coding retained_intron MGP_C3HHeJ_T0082158.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26654973 26670672 + MGP_C3HHeJ_P0082158 2310022A10Rik protein_coding protein_coding MGP_C3HHeJ_T0082159.1 MGP_C3HHeJ_G0031623.1 mouse_genomes_project 7 26664504 26670458 + 2310022A10Rik protein_coding processed_transcript MGP_C3HHeJ_T0008792.1 MGP_C3HHeJ_G0007094.1 mouse_genomes_project 7 62815528 63007005 - lincRNA lincRNA MGP_C3HHeJ_T0081139.1 MGP_C3HHeJ_G0031302.1 mouse_genomes_project 7 3344396 3368924 + MGP_C3HHeJ_P0081139 Zfp667 protein_coding protein_coding MGP_C3HHeJ_T0081140.1 MGP_C3HHeJ_G0031302.1 mouse_genomes_project 7 3344410 3360718 + Zfp667 protein_coding processed_transcript MGP_C3HHeJ_T0081141.1 MGP_C3HHeJ_G0031302.1 mouse_genomes_project 7 3344431 3368903 + MGP_C3HHeJ_P0081141 Zfp667 protein_coding protein_coding MGP_C3HHeJ_T0081142.1 MGP_C3HHeJ_G0031302.1 mouse_genomes_project 7 3345681 3368723 + MGP_C3HHeJ_P0081142 Zfp667 protein_coding protein_coding MGP_C3HHeJ_T0081143.1 MGP_C3HHeJ_G0031302.1 mouse_genomes_project 7 3349561 3353623 + Zfp667 protein_coding retained_intron MGP_C3HHeJ_T0010845.1 MGP_C3HHeJ_G0008978.1 mouse_genomes_project 7 146316878 146316969 + Mir7063 miRNA miRNA MGP_C3HHeJ_T0005182.1 MGP_C3HHeJ_G0004395.1 mouse_genomes_project 7 99480936 99513930 - Gm15414 antisense antisense MGP_C3HHeJ_T0083336.1 MGP_C3HHeJ_G0031909.1 mouse_genomes_project 7 46229799 46234894 - MGP_C3HHeJ_P0083336 protein_coding protein_coding MGP_C3HHeJ_T0085576.1 MGP_C3HHeJ_G0032575.1 mouse_genomes_project 7 117283398 117283884 - MGP_C3HHeJ_P0085576 protein_coding protein_coding MGP_C3HHeJ_T0082542.1 MGP_C3HHeJ_G0031722.1 mouse_genomes_project 7 29801691 29807487 + MGP_C3HHeJ_P0082542 Nfkbid protein_coding protein_coding MGP_C3HHeJ_T0082543.1 MGP_C3HHeJ_G0031722.1 mouse_genomes_project 7 29804858 29805562 + Nfkbid protein_coding retained_intron MGP_C3HHeJ_T0087101.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145855796 145860652 - MGP_C3HHeJ_P0087101 Hras protein_coding protein_coding MGP_C3HHeJ_T0087102.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145856625 145860696 - MGP_C3HHeJ_P0087102 Hras protein_coding protein_coding MGP_C3HHeJ_T0087103.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145857617 145860686 - Hras protein_coding retained_intron MGP_C3HHeJ_T0087104.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145857617 145860697 - MGP_C3HHeJ_P0087104 Hras protein_coding protein_coding MGP_C3HHeJ_T0087105.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145857618 145859196 - Hras protein_coding processed_transcript MGP_C3HHeJ_T0087106.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145857621 145858669 - Hras protein_coding processed_transcript MGP_C3HHeJ_T0087107.1 MGP_C3HHeJ_G0032911.1 mouse_genomes_project 7 145857621 145860574 - MGP_C3HHeJ_P0087107 Hras protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008968.1 MGP_C3HHeJ_G0007210.1 mouse_genomes_project 7 138817694 138895492 - Gm4593 lincRNA lincRNA MGP_C3HHeJ_T0008969.1 MGP_C3HHeJ_G0007210.1 mouse_genomes_project 7 138894698 138897444 - Gm4593 lincRNA lincRNA MGP_C3HHeJ_T0015510.1 MGP_C3HHeJ_G0013614.1 mouse_genomes_project 7 11312483 11315916 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102162.1 MGP_C3HHeJ_G0040126.1 mouse_genomes_project 7 9522170 9523415 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081195.1 MGP_C3HHeJ_G0031334.1 mouse_genomes_project 7 9070892 9077393 + MGP_C3HHeJ_P0081195 protein_coding protein_coding MGP_C3HHeJ_T0084267.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82782531 82798878 - Man2a2 protein_coding retained_intron MGP_C3HHeJ_T0084268.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82782531 82806773 - MGP_C3HHeJ_P0084268 Man2a2 protein_coding protein_coding MGP_C3HHeJ_T0084269.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82784657 82795127 - MGP_C3HHeJ_P0084269 Man2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084270.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82790291 82799088 - Man2a2 protein_coding retained_intron MGP_C3HHeJ_T0084271.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82794515 82795293 - Man2a2 protein_coding retained_intron MGP_C3HHeJ_T0084272.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82795098 82798916 - MGP_C3HHeJ_P0084272 Man2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084273.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82795731 82806259 - MGP_C3HHeJ_P0084273 Man2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084274.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82795896 82806524 - Man2a2 protein_coding retained_intron MGP_C3HHeJ_T0084275.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82798081 82799076 - Man2a2 protein_coding retained_intron MGP_C3HHeJ_T0084276.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82805033 82806256 - MGP_C3HHeJ_P0084276 Man2a2 protein_coding protein_coding MGP_C3HHeJ_T0084277.1 MGP_C3HHeJ_G0032117.1 mouse_genomes_project 7 82805061 82806480 - MGP_C3HHeJ_P0084277 Man2a2 protein_coding protein_coding MGP_C3HHeJ_T0084775.1 MGP_C3HHeJ_G0032256.1 mouse_genomes_project 7 102770987 102774249 + MGP_C3HHeJ_P0084775 Olfr521 protein_coding protein_coding MGP_C3HHeJ_T0085118.1 MGP_C3HHeJ_G0032384.1 mouse_genomes_project 7 107219615 107220575 + MGP_C3HHeJ_P0085118 Olfr631 protein_coding protein_coding MGP_C3HHeJ_T0005187.1 MGP_C3HHeJ_G0004400.1 mouse_genomes_project 7 100549572 100601989 - Rsf1os2 antisense antisense MGP_C3HHeJ_T0005188.1 MGP_C3HHeJ_G0004400.1 mouse_genomes_project 7 100598867 100602067 - Rsf1os2 antisense antisense MGP_C3HHeJ_T0005189.1 MGP_C3HHeJ_G0004400.1 mouse_genomes_project 7 100601328 100602274 - Rsf1os2 antisense antisense MGP_C3HHeJ_T0099558.1 MGP_C3HHeJ_G0037752.1 mouse_genomes_project 7 1055033 1055204 + Gm23741 snRNA snRNA MGP_C3HHeJ_T0098538.1 MGP_C3HHeJ_G0036739.1 mouse_genomes_project 7 74297987 74299027 - sense_intronic sense_intronic MGP_C3HHeJ_T0005185.1 MGP_C3HHeJ_G0004398.1 mouse_genomes_project 7 99704873 99709299 - Gm44633 antisense antisense MGP_C3HHeJ_T0081639.1 MGP_C3HHeJ_G0031479.1 mouse_genomes_project 7 17788854 17800299 + MGP_C3HHeJ_P0081639 Ckm protein_coding protein_coding MGP_C3HHeJ_T0082717.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481112 30490154 - MGP_C3HHeJ_P0082717 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082718.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481116 30490796 - MGP_C3HHeJ_P0082718 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082719.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481120 30488734 - Fxyd5 protein_coding retained_intron MGP_C3HHeJ_T0082720.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481120 30486301 - Fxyd5 protein_coding retained_intron MGP_C3HHeJ_T0082721.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481120 30487356 - MGP_C3HHeJ_P0082721 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082722.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481120 30490433 - MGP_C3HHeJ_P0082722 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082723.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481123 30490393 - MGP_C3HHeJ_P0082723 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082724.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481123 30490393 - MGP_C3HHeJ_P0082724 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082725.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481153 30490461 - MGP_C3HHeJ_P0082725 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082726.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30481197 30490455 - MGP_C3HHeJ_P0082726 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082727.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30484846 30490431 - MGP_C3HHeJ_P0082727 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082728.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30484875 30490428 - MGP_C3HHeJ_P0082728 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082729.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30484877 30490402 - MGP_C3HHeJ_P0082729 Fxyd5 protein_coding protein_coding MGP_C3HHeJ_T0082730.1 MGP_C3HHeJ_G0031757.1 mouse_genomes_project 7 30489485 30490455 - Fxyd5 protein_coding retained_intron MGP_C3HHeJ_T0080803.1 MGP_C3HHeJ_G0031216.1 mouse_genomes_project 7 42881 55998 - AU018091 protein_coding processed_transcript MGP_C3HHeJ_T0080804.1 MGP_C3HHeJ_G0031216.1 mouse_genomes_project 7 42881 61867 - MGP_C3HHeJ_P0080804 AU018091 protein_coding protein_coding MGP_C3HHeJ_T0080805.1 MGP_C3HHeJ_G0031216.1 mouse_genomes_project 7 53215 61772 - MGP_C3HHeJ_P0080805 AU018091 protein_coding protein_coding MGP_C3HHeJ_T0010826.1 MGP_C3HHeJ_G0008959.1 mouse_genomes_project 7 117241864 117241966 - Gm23700 miRNA miRNA MGP_C3HHeJ_T0008852.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81875928 81907293 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0008853.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81875940 81907498 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0008854.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81876019 81910392 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0008855.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81876023 81907383 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0008856.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81890923 81908581 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0008857.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81891126 81907249 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0008858.1 MGP_C3HHeJ_G0007141.1 mouse_genomes_project 7 81904004 81908034 + Mir9-3hg lincRNA lincRNA MGP_C3HHeJ_T0082879.1 MGP_C3HHeJ_G0031788.1 mouse_genomes_project 7 35352092 35355025 - Lrp3 protein_coding processed_transcript MGP_C3HHeJ_T0082880.1 MGP_C3HHeJ_G0031788.1 mouse_genomes_project 7 35352943 35355291 - Lrp3 protein_coding retained_intron MGP_C3HHeJ_T0082881.1 MGP_C3HHeJ_G0031788.1 mouse_genomes_project 7 35352943 35367560 - MGP_C3HHeJ_P0082881 Lrp3 protein_coding protein_coding MGP_C3HHeJ_T0082882.1 MGP_C3HHeJ_G0031788.1 mouse_genomes_project 7 35352944 35367354 - MGP_C3HHeJ_P0082882 Lrp3 protein_coding protein_coding MGP_C3HHeJ_T0099593.1 MGP_C3HHeJ_G0037787.1 mouse_genomes_project 7 98291133 98291240 - Gm25684 snRNA snRNA MGP_C3HHeJ_T0083881.1 MGP_C3HHeJ_G0032045.1 mouse_genomes_project 7 66742269 66748211 - MGP_C3HHeJ_P0083881 Ndnl2 protein_coding protein_coding MGP_C3HHeJ_T0082883.1 MGP_C3HHeJ_G0031789.1 mouse_genomes_project 7 35435268 35482501 - MGP_C3HHeJ_P0082883 Gpatch1 protein_coding protein_coding MGP_C3HHeJ_T0082884.1 MGP_C3HHeJ_G0031789.1 mouse_genomes_project 7 35435276 35482482 - MGP_C3HHeJ_P0082884 Gpatch1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082885.1 MGP_C3HHeJ_G0031789.1 mouse_genomes_project 7 35446423 35482501 - MGP_C3HHeJ_P0082885 Gpatch1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082886.1 MGP_C3HHeJ_G0031789.1 mouse_genomes_project 7 35446456 35448124 - Gpatch1 protein_coding retained_intron MGP_C3HHeJ_T0082887.1 MGP_C3HHeJ_G0031789.1 mouse_genomes_project 7 35471109 35482456 - Gpatch1 protein_coding retained_intron MGP_C3HHeJ_T0081455.1 MGP_C3HHeJ_G0031421.1 mouse_genomes_project 7 14881007 14893800 + MGP_C3HHeJ_P0081455 Dact3 protein_coding protein_coding MGP_C3HHeJ_T0008961.1 MGP_C3HHeJ_G0007205.1 mouse_genomes_project 7 134726190 134729452 + lincRNA lincRNA MGP_C3HHeJ_T0099582.1 MGP_C3HHeJ_G0037776.1 mouse_genomes_project 7 68034579 68034680 - Gm23042 snRNA snRNA MGP_C3HHeJ_T0015696.1 MGP_C3HHeJ_G0013800.1 mouse_genomes_project 7 113893534 113894100 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083415.1 MGP_C3HHeJ_G0031928.1 mouse_genomes_project 7 46530664 46547979 - MGP_C3HHeJ_P0083415 Ruvbl2 protein_coding protein_coding MGP_C3HHeJ_T0083416.1 MGP_C3HHeJ_G0031928.1 mouse_genomes_project 7 46530710 46543436 - MGP_C3HHeJ_P0083416 Ruvbl2 protein_coding protein_coding MGP_C3HHeJ_T0083417.1 MGP_C3HHeJ_G0031928.1 mouse_genomes_project 7 46533763 46543522 - MGP_C3HHeJ_P0083417 Ruvbl2 protein_coding protein_coding MGP_C3HHeJ_T0100814.1 MGP_C3HHeJ_G0039008.1 mouse_genomes_project 7 35369296 35369422 + Gm24505 snoRNA snoRNA MGP_C3HHeJ_T0084175.1 MGP_C3HHeJ_G0032098.1 mouse_genomes_project 7 82121801 82128739 - MGP_C3HHeJ_P0084175 Pex11a protein_coding protein_coding MGP_C3HHeJ_T0084176.1 MGP_C3HHeJ_G0032098.1 mouse_genomes_project 7 82122933 82128790 - Pex11a protein_coding processed_transcript MGP_C3HHeJ_T0084177.1 MGP_C3HHeJ_G0032098.1 mouse_genomes_project 7 82123094 82124569 - Pex11a protein_coding retained_intron MGP_C3HHeJ_T0084178.1 MGP_C3HHeJ_G0032098.1 mouse_genomes_project 7 82123616 82126201 - Pex11a protein_coding retained_intron MGP_C3HHeJ_T0101467.1 MGP_C3HHeJ_G0039473.1 mouse_genomes_project 7 12330432 12406893 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101468.1 MGP_C3HHeJ_G0039473.1 mouse_genomes_project 7 12356497 12406943 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0002176.1 MGP_C3HHeJ_G0002097.1 mouse_genomes_project 7 37728593 37730896 - TEC TEC MGP_C3HHeJ_T0082245.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27572339 27579494 + MGP_C3HHeJ_P0082245 Paf1 protein_coding protein_coding MGP_C3HHeJ_T0082246.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27572350 27573434 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082247.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27572429 27579489 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082248.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27572549 27575128 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082249.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27572846 27575046 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082250.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27574113 27575150 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082251.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27574775 27575430 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082252.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27575175 27578849 + Paf1 protein_coding retained_intron MGP_C3HHeJ_T0082253.1 MGP_C3HHeJ_G0031651.1 mouse_genomes_project 7 27578539 27579166 + Paf1 protein_coding processed_transcript MGP_C3HHeJ_T0081576.1 MGP_C3HHeJ_G0031465.1 mouse_genomes_project 7 17512836 17517423 + MGP_C3HHeJ_P0081576 Snrpd2 protein_coding protein_coding MGP_C3HHeJ_T0081577.1 MGP_C3HHeJ_G0031465.1 mouse_genomes_project 7 17512973 17514208 + Snrpd2 protein_coding retained_intron MGP_C3HHeJ_T0083271.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45923396 45931402 - Tbc1d17 protein_coding retained_intron MGP_C3HHeJ_T0083272.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45923515 45931566 - MGP_C3HHeJ_P0083272 Tbc1d17 protein_coding protein_coding MGP_C3HHeJ_T0083273.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45923523 45931570 - MGP_C3HHeJ_P0083273 Tbc1d17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083274.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45923524 45931381 - Tbc1d17 protein_coding retained_intron MGP_C3HHeJ_T0083275.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45925870 45926815 - Tbc1d17 protein_coding retained_intron MGP_C3HHeJ_T0083276.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45927067 45928491 - Tbc1d17 protein_coding retained_intron MGP_C3HHeJ_T0083277.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45930516 45931386 - Tbc1d17 protein_coding retained_intron MGP_C3HHeJ_T0083278.1 MGP_C3HHeJ_G0031887.1 mouse_genomes_project 7 45930765 45931085 - Tbc1d17 protein_coding retained_intron MGP_C3HHeJ_T0102316.1 MGP_C3HHeJ_G0040279.1 mouse_genomes_project 7 109125769 109727950 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102297.1 MGP_C3HHeJ_G0040260.1 mouse_genomes_project 7 106363616 106364564 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085190.1 MGP_C3HHeJ_G0032427.1 mouse_genomes_project 7 108134843 108135824 - MGP_C3HHeJ_P0085190 Olfr667 protein_coding protein_coding MGP_C3HHeJ_T0080851.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 528218 532542 + Cnot3 protein_coding retained_intron MGP_C3HHeJ_T0080852.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 528240 545499 + Cnot3 protein_coding retained_intron MGP_C3HHeJ_T0080853.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 528259 534797 + MGP_C3HHeJ_P0080853 Cnot3 protein_coding protein_coding MGP_C3HHeJ_T0080854.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 528302 545500 + MGP_C3HHeJ_P0080854 Cnot3 protein_coding protein_coding MGP_C3HHeJ_T0080855.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 534254 538773 + MGP_C3HHeJ_P0080855 Cnot3 protein_coding protein_coding MGP_C3HHeJ_T0080856.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 534516 542810 + MGP_C3HHeJ_P0080856 Cnot3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080857.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 542257 545398 + Cnot3 protein_coding retained_intron MGP_C3HHeJ_T0080858.1 MGP_C3HHeJ_G0031228.1 mouse_genomes_project 7 542693 545398 + MGP_C3HHeJ_P0080858 Cnot3 protein_coding protein_coding MGP_C3HHeJ_T0005098.1 MGP_C3HHeJ_G0004335.1 mouse_genomes_project 7 24204070 24271742 + antisense antisense MGP_C3HHeJ_T0005099.1 MGP_C3HHeJ_G0004335.1 mouse_genomes_project 7 24204074 24214619 + antisense antisense MGP_C3HHeJ_T0005100.1 MGP_C3HHeJ_G0004335.1 mouse_genomes_project 7 24213687 24214456 + antisense antisense MGP_C3HHeJ_T0083665.1 MGP_C3HHeJ_G0031999.1 mouse_genomes_project 7 50259647 50277269 - MGP_C3HHeJ_P0083665 Csrp3 protein_coding protein_coding MGP_C3HHeJ_T0083666.1 MGP_C3HHeJ_G0031999.1 mouse_genomes_project 7 50259647 50272889 - MGP_C3HHeJ_P0083666 Csrp3 protein_coding protein_coding MGP_C3HHeJ_T0082218.1 MGP_C3HHeJ_G0031644.1 mouse_genomes_project 7 27465916 27474552 - MGP_C3HHeJ_P0082218 Dll3 protein_coding protein_coding MGP_C3HHeJ_T0082219.1 MGP_C3HHeJ_G0031644.1 mouse_genomes_project 7 27465962 27466845 - Dll3 protein_coding processed_transcript MGP_C3HHeJ_T0082220.1 MGP_C3HHeJ_G0031644.1 mouse_genomes_project 7 27470991 27474086 - Dll3 protein_coding retained_intron MGP_C3HHeJ_T0101486.1 MGP_C3HHeJ_G0039483.1 mouse_genomes_project 7 130672797 130676357 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0086368.1 MGP_C3HHeJ_G0032733.1 mouse_genomes_project 7 131450934 131452999 - MGP_C3HHeJ_P0086368 protein_coding protein_coding MGP_C3HHeJ_T0082036.1 MGP_C3HHeJ_G0031594.1 mouse_genomes_project 7 25521145 25563500 + MGP_C3HHeJ_P0082036 Nlrp9a protein_coding protein_coding MGP_C3HHeJ_T0082037.1 MGP_C3HHeJ_G0031594.1 mouse_genomes_project 7 25521187 25563496 + MGP_C3HHeJ_P0082037 Nlrp9a protein_coding protein_coding MGP_C3HHeJ_T0082038.1 MGP_C3HHeJ_G0031594.1 mouse_genomes_project 7 25521188 25557355 + MGP_C3HHeJ_P0082038 Nlrp9a protein_coding protein_coding MGP_C3HHeJ_T0082039.1 MGP_C3HHeJ_G0031594.1 mouse_genomes_project 7 25521193 25553906 + Nlrp9a protein_coding processed_transcript MGP_C3HHeJ_T0082040.1 MGP_C3HHeJ_G0031594.1 mouse_genomes_project 7 25539668 25563305 + MGP_C3HHeJ_P0082040 Nlrp9a protein_coding protein_coding MGP_C3HHeJ_T0082041.1 MGP_C3HHeJ_G0031594.1 mouse_genomes_project 7 25539668 25564967 + MGP_C3HHeJ_P0082041 Nlrp9a protein_coding protein_coding MGP_C3HHeJ_T0002246.1 MGP_C3HHeJ_G0002166.1 mouse_genomes_project 7 83045629 83046188 - TEC TEC MGP_C3HHeJ_T0005197.1 MGP_C3HHeJ_G0004405.1 mouse_genomes_project 7 114382675 114383542 + Gm16336 antisense antisense MGP_C3HHeJ_T0002185.1 MGP_C3HHeJ_G0002106.1 mouse_genomes_project 7 44705231 44705684 + TEC TEC MGP_C3HHeJ_T0015652.1 MGP_C3HHeJ_G0013756.1 mouse_genomes_project 7 83649110 83649458 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082519.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698685 29700536 + Syne4 protein_coding processed_transcript MGP_C3HHeJ_T0082520.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698694 29702925 + MGP_C3HHeJ_P0082520 Syne4 protein_coding protein_coding MGP_C3HHeJ_T0082521.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698749 29699588 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082522.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698758 29700970 + MGP_C3HHeJ_P0082522 Syne4 protein_coding protein_coding MGP_C3HHeJ_T0082523.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698763 29700739 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082524.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698766 29700964 + MGP_C3HHeJ_P0082524 Syne4 protein_coding protein_coding MGP_C3HHeJ_T0082525.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698794 29702925 + MGP_C3HHeJ_P0082525 Syne4 protein_coding protein_coding MGP_C3HHeJ_T0082526.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29698831 29702880 + MGP_C3HHeJ_P0082526 Syne4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082527.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29699028 29700225 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082528.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29699188 29701229 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082529.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29699898 29700746 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082530.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29700650 29702925 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082531.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29700820 29702921 + MGP_C3HHeJ_P0082531 Syne4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082532.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29700865 29702924 + MGP_C3HHeJ_P0082532 Syne4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082533.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29700866 29702919 + MGP_C3HHeJ_P0082533 Syne4 protein_coding protein_coding MGP_C3HHeJ_T0082534.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29700898 29702923 + MGP_C3HHeJ_P0082534 Syne4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082535.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29701118 29702919 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0082536.1 MGP_C3HHeJ_G0031716.1 mouse_genomes_project 7 29701644 29702919 + Syne4 protein_coding retained_intron MGP_C3HHeJ_T0085180.1 MGP_C3HHeJ_G0032417.1 mouse_genomes_project 7 107775510 107776536 + MGP_C3HHeJ_P0085180 Olfr654 protein_coding protein_coding MGP_C3HHeJ_T0008790.1 MGP_C3HHeJ_G0007092.1 mouse_genomes_project 7 51335782 51337219 - Gm26856 lincRNA lincRNA MGP_C3HHeJ_T0082346.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405020 28423229 + MGP_C3HHeJ_P0082346 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082347.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405020 28423229 + MGP_C3HHeJ_P0082347 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082348.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405020 28423229 + MGP_C3HHeJ_P0082348 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082349.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405020 28423229 + MGP_C3HHeJ_P0082349 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082350.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405020 28423229 + MGP_C3HHeJ_P0082350 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082351.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405020 28423229 + MGP_C3HHeJ_P0082351 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082352.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405102 28420001 + Rasgrp4 protein_coding retained_intron MGP_C3HHeJ_T0082353.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405102 28424626 + MGP_C3HHeJ_P0082353 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082354.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405102 28424648 + MGP_C3HHeJ_P0082354 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082355.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405102 28422308 + MGP_C3HHeJ_P0082355 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082356.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405151 28421663 + Rasgrp4 protein_coding retained_intron MGP_C3HHeJ_T0082357.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405175 28419236 + MGP_C3HHeJ_P0082357 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0082358.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28405271 28422186 + MGP_C3HHeJ_P0082358 Rasgrp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082359.1 MGP_C3HHeJ_G0031675.1 mouse_genomes_project 7 28420880 28422306 + MGP_C3HHeJ_P0082359 Rasgrp4 protein_coding protein_coding MGP_C3HHeJ_T0085580.1 MGP_C3HHeJ_G0032578.1 mouse_genomes_project 7 117807772 117847234 - MGP_C3HHeJ_P0085580 Copb1 protein_coding protein_coding MGP_C3HHeJ_T0101478.1 MGP_C3HHeJ_G0039479.1 mouse_genomes_project 7 42375005 42915962 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101479.1 MGP_C3HHeJ_G0039479.1 mouse_genomes_project 7 42375580 42462875 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0081506.1 MGP_C3HHeJ_G0031444.1 mouse_genomes_project 7 16780095 16790453 - MGP_C3HHeJ_P0081506 protein_coding protein_coding MGP_C3HHeJ_T0099614.1 MGP_C3HHeJ_G0037808.1 mouse_genomes_project 7 131085863 131085951 + Gm22747 snRNA snRNA MGP_C3HHeJ_T0081735.1 MGP_C3HHeJ_G0031514.1 mouse_genomes_project 7 22565609 22566524 + MGP_C3HHeJ_P0081735 Vmn1r178 protein_coding protein_coding MGP_C3HHeJ_T0083909.1 MGP_C3HHeJ_G0032050.1 mouse_genomes_project 7 67949712 67972898 + MGP_C3HHeJ_P0083909 Gm45213 protein_coding protein_coding MGP_C3HHeJ_T0085318.1 MGP_C3HHeJ_G0032467.1 mouse_genomes_project 7 110071415 110072462 - MGP_C3HHeJ_P0085318 Olfr697 protein_coding protein_coding MGP_C3HHeJ_T0081578.1 MGP_C3HHeJ_G0031466.1 mouse_genomes_project 7 17520631 17530502 - MGP_C3HHeJ_P0081578 Gipr protein_coding protein_coding MGP_C3HHeJ_T0081579.1 MGP_C3HHeJ_G0031466.1 mouse_genomes_project 7 17520634 17530502 - Gipr protein_coding retained_intron MGP_C3HHeJ_T0081580.1 MGP_C3HHeJ_G0031466.1 mouse_genomes_project 7 17526662 17530502 - MGP_C3HHeJ_P0081580 Gipr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081581.1 MGP_C3HHeJ_G0031466.1 mouse_genomes_project 7 17526829 17529465 - Gipr protein_coding retained_intron MGP_C3HHeJ_T0002215.1 MGP_C3HHeJ_G0002136.1 mouse_genomes_project 7 75677820 75679067 - TEC TEC MGP_C3HHeJ_T0085203.1 MGP_C3HHeJ_G0032440.1 mouse_genomes_project 7 108594108 108595184 + MGP_C3HHeJ_P0085203 Olfr689 protein_coding protein_coding MGP_C3HHeJ_T0085100.1 MGP_C3HHeJ_G0032368.1 mouse_genomes_project 7 106891444 106892398 - MGP_C3HHeJ_P0085100 Olfr622 protein_coding protein_coding MGP_C3HHeJ_T0102317.1 MGP_C3HHeJ_G0040280.1 mouse_genomes_project 7 109125769 109917834 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082797.1 MGP_C3HHeJ_G0031771.1 mouse_genomes_project 7 33957211 33959250 - MGP_C3HHeJ_P0082797 Scgb2b26 protein_coding protein_coding MGP_C3HHeJ_T0015574.1 MGP_C3HHeJ_G0013678.1 mouse_genomes_project 7 34270480 34270813 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086155.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130755972 130761217 + MGP_C3HHeJ_P0086155 Mapk3 protein_coding protein_coding MGP_C3HHeJ_T0086156.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130756017 130762194 + MGP_C3HHeJ_P0086156 Mapk3 protein_coding protein_coding MGP_C3HHeJ_T0086157.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130756022 130761216 + MGP_C3HHeJ_P0086157 Mapk3 protein_coding protein_coding MGP_C3HHeJ_T0086158.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130756031 130757379 + Mapk3 protein_coding retained_intron MGP_C3HHeJ_T0086159.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130756205 130759531 + Mapk3 protein_coding processed_transcript MGP_C3HHeJ_T0086160.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130757120 130760944 + MGP_C3HHeJ_P0086160 Mapk3 protein_coding protein_coding MGP_C3HHeJ_T0086161.1 MGP_C3HHeJ_G0032693.1 mouse_genomes_project 7 130759648 130760732 + Mapk3 protein_coding retained_intron MGP_C3HHeJ_T0083430.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46613499 46633290 - MGP_C3HHeJ_P0083430 Nucb1 protein_coding protein_coding MGP_C3HHeJ_T0083431.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46614797 46623956 - MGP_C3HHeJ_P0083431 Nucb1 protein_coding protein_coding MGP_C3HHeJ_T0083432.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46615678 46616115 - Nucb1 protein_coding processed_transcript MGP_C3HHeJ_T0083433.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46616052 46623950 - Nucb1 protein_coding processed_transcript MGP_C3HHeJ_T0083434.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46618790 46619462 - Nucb1 protein_coding retained_intron MGP_C3HHeJ_T0083435.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46619350 46633199 - MGP_C3HHeJ_P0083435 Nucb1 protein_coding protein_coding MGP_C3HHeJ_T0083436.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46622216 46633215 - MGP_C3HHeJ_P0083436 Nucb1 protein_coding protein_coding MGP_C3HHeJ_T0083437.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46623764 46633273 - Nucb1 protein_coding processed_transcript MGP_C3HHeJ_T0083438.1 MGP_C3HHeJ_G0031933.1 mouse_genomes_project 7 46630052 46633269 - Nucb1 protein_coding retained_intron MGP_C3HHeJ_T0102172.1 MGP_C3HHeJ_G0040136.1 mouse_genomes_project 7 11906856 11913901 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081456.1 MGP_C3HHeJ_G0031422.1 mouse_genomes_project 7 14898154 14901756 + MGP_C3HHeJ_P0081456 Gng8 protein_coding protein_coding MGP_C3HHeJ_T0081457.1 MGP_C3HHeJ_G0031422.1 mouse_genomes_project 7 14898580 14901766 + MGP_C3HHeJ_P0081457 Gng8 protein_coding protein_coding MGP_C3HHeJ_T0081458.1 MGP_C3HHeJ_G0031422.1 mouse_genomes_project 7 14898639 14901754 + MGP_C3HHeJ_P0081458 Gng8 protein_coding protein_coding MGP_C3HHeJ_T0081459.1 MGP_C3HHeJ_G0031422.1 mouse_genomes_project 7 14898689 14901757 + Gng8 protein_coding processed_transcript MGP_C3HHeJ_T0081460.1 MGP_C3HHeJ_G0031422.1 mouse_genomes_project 7 14900977 14901767 + Gng8 protein_coding retained_intron MGP_C3HHeJ_T0081461.1 MGP_C3HHeJ_G0031422.1 mouse_genomes_project 7 14901275 14901694 + Gng8 protein_coding retained_intron MGP_C3HHeJ_T0087040.1 MGP_C3HHeJ_G0032894.1 mouse_genomes_project 7 145492560 145511835 - MGP_C3HHeJ_P0087040 Sirt3 protein_coding protein_coding MGP_C3HHeJ_T0087041.1 MGP_C3HHeJ_G0032894.1 mouse_genomes_project 7 145492560 145512275 - MGP_C3HHeJ_P0087041 Sirt3 protein_coding protein_coding MGP_C3HHeJ_T0087042.1 MGP_C3HHeJ_G0032894.1 mouse_genomes_project 7 145493910 145508113 - MGP_C3HHeJ_P0087042 Sirt3 protein_coding protein_coding MGP_C3HHeJ_T0087043.1 MGP_C3HHeJ_G0032894.1 mouse_genomes_project 7 145498305 145511835 - MGP_C3HHeJ_P0087043 Sirt3 protein_coding protein_coding MGP_C3HHeJ_T0087044.1 MGP_C3HHeJ_G0032894.1 mouse_genomes_project 7 145506399 145511835 - MGP_C3HHeJ_P0087044 Sirt3 protein_coding protein_coding MGP_C3HHeJ_T0084746.1 MGP_C3HHeJ_G0032248.1 mouse_genomes_project 7 102317227 102324986 - MGP_C3HHeJ_P0084746 Serpinh1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085356.1 MGP_C3HHeJ_G0032497.1 mouse_genomes_project 7 111144022 111144949 + MGP_C3HHeJ_P0085356 Olfr467 protein_coding protein_coding MGP_C3HHeJ_T0083671.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50338742 50398189 + Nav2 protein_coding processed_transcript MGP_C3HHeJ_T0083672.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50393475 50402809 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083673.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50393499 51070259 + MGP_C3HHeJ_P0083673 Nav2 protein_coding protein_coding MGP_C3HHeJ_T0083674.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50690644 50855928 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083675.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50690644 51075087 + MGP_C3HHeJ_P0083675 Nav2 protein_coding protein_coding MGP_C3HHeJ_T0083676.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50691299 51075090 + MGP_C3HHeJ_P0083676 Nav2 protein_coding protein_coding MGP_C3HHeJ_T0083677.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50691300 50946356 + MGP_C3HHeJ_P0083677 Nav2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083678.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50691423 51070259 + MGP_C3HHeJ_P0083678 Nav2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083679.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50691423 50952864 + MGP_C3HHeJ_P0083679 Nav2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083680.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50749070 50857720 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083681.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50749184 50883684 + Nav2 protein_coding processed_transcript MGP_C3HHeJ_T0083682.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50749186 50750848 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083683.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50810051 50905881 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083684.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50902004 50915784 + Nav2 protein_coding processed_transcript MGP_C3HHeJ_T0083685.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 50978255 51070259 + MGP_C3HHeJ_P0083685 Nav2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083686.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 51006907 51015589 + MGP_C3HHeJ_P0083686 Nav2 protein_coding protein_coding MGP_C3HHeJ_T0083687.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 51012498 51015329 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083688.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 51037624 51039090 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083689.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 51047734 51049314 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083690.1 MGP_C3HHeJ_G0032001.1 mouse_genomes_project 7 51049858 51052444 + Nav2 protein_coding retained_intron MGP_C3HHeJ_T0083194.1 MGP_C3HHeJ_G0031871.1 mouse_genomes_project 7 45539723 45546316 - MGP_C3HHeJ_P0083194 Emc10 protein_coding protein_coding MGP_C3HHeJ_T0083195.1 MGP_C3HHeJ_G0031871.1 mouse_genomes_project 7 45539897 45546193 - MGP_C3HHeJ_P0083195 Emc10 protein_coding protein_coding MGP_C3HHeJ_T0083196.1 MGP_C3HHeJ_G0031871.1 mouse_genomes_project 7 45540693 45541803 - Emc10 protein_coding retained_intron MGP_C3HHeJ_T0083197.1 MGP_C3HHeJ_G0031871.1 mouse_genomes_project 7 45541519 45546250 - Emc10 protein_coding retained_intron MGP_C3HHeJ_T0083198.1 MGP_C3HHeJ_G0031871.1 mouse_genomes_project 7 45541787 45546215 - MGP_C3HHeJ_P0083198 Emc10 protein_coding protein_coding MGP_C3HHeJ_T0083199.1 MGP_C3HHeJ_G0031871.1 mouse_genomes_project 7 45544060 45546184 - Emc10 protein_coding retained_intron MGP_C3HHeJ_T0102304.1 MGP_C3HHeJ_G0040267.1 mouse_genomes_project 7 106944108 106944393 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005175.1 MGP_C3HHeJ_G0004392.1 mouse_genomes_project 7 92209793 92211155 + Prss23os antisense antisense MGP_C3HHeJ_T0005176.1 MGP_C3HHeJ_G0004392.1 mouse_genomes_project 7 92209809 92210278 + Prss23os antisense antisense MGP_C3HHeJ_T0080820.1 MGP_C3HHeJ_G0031221.1 mouse_genomes_project 7 304952 331498 + MGP_C3HHeJ_P0080820 Cacng8 protein_coding protein_coding MGP_C3HHeJ_T0080821.1 MGP_C3HHeJ_G0031221.1 mouse_genomes_project 7 308396 331455 + MGP_C3HHeJ_P0080821 Cacng8 protein_coding protein_coding MGP_C3HHeJ_T0080822.1 MGP_C3HHeJ_G0031221.1 mouse_genomes_project 7 308697 309232 + MGP_C3HHeJ_P0080822 Cacng8 protein_coding protein_coding MGP_C3HHeJ_T0084090.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81247532 81260798 + Aen protein_coding processed_transcript MGP_C3HHeJ_T0084091.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81247605 81260798 + MGP_C3HHeJ_P0084091 Aen protein_coding protein_coding MGP_C3HHeJ_T0084092.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81247612 81257976 + MGP_C3HHeJ_P0084092 Aen protein_coding protein_coding MGP_C3HHeJ_T0084093.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81247687 81257973 + MGP_C3HHeJ_P0084093 Aen protein_coding protein_coding MGP_C3HHeJ_T0084094.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81249709 81251625 + MGP_C3HHeJ_P0084094 Aen protein_coding protein_coding MGP_C3HHeJ_T0084095.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81251163 81254782 + Aen protein_coding processed_transcript MGP_C3HHeJ_T0084096.1 MGP_C3HHeJ_G0032085.1 mouse_genomes_project 7 81251381 81256145 + MGP_C3HHeJ_P0084096 Aen protein_coding protein_coding MGP_C3HHeJ_T0015728.1 MGP_C3HHeJ_G0013832.1 mouse_genomes_project 7 133139805 133140491 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099595.1 MGP_C3HHeJ_G0037789.1 mouse_genomes_project 7 101443488 101443652 + Gm23040 snRNA snRNA MGP_C3HHeJ_T0085070.1 MGP_C3HHeJ_G0032339.1 mouse_genomes_project 7 106209021 106209963 - MGP_C3HHeJ_P0085070 Olfr578 protein_coding protein_coding MGP_C3HHeJ_T0081074.1 MGP_C3HHeJ_G0031269.1 mouse_genomes_project 7 1837910 1865233 - MGP_C3HHeJ_P0081074 Isoc2b protein_coding protein_coding MGP_C3HHeJ_T0005184.1 MGP_C3HHeJ_G0004397.1 mouse_genomes_project 7 99703439 99708478 - Gm15416 antisense antisense MGP_C3HHeJ_T0081121.1 MGP_C3HHeJ_G0031297.1 mouse_genomes_project 7 3178148 3202631 - MGP_C3HHeJ_P0081121 Zfp787 protein_coding protein_coding MGP_C3HHeJ_T0080943.1 MGP_C3HHeJ_G0031244.1 mouse_genomes_project 7 1197005 1202694 + MGP_C3HHeJ_P0080943 Lilra5 protein_coding protein_coding MGP_C3HHeJ_T0099563.1 MGP_C3HHeJ_G0037757.1 mouse_genomes_project 7 14611779 14611882 - Gm24708 snRNA snRNA MGP_C3HHeJ_T0084781.1 MGP_C3HHeJ_G0032261.1 mouse_genomes_project 7 103036421 103065007 + MGP_C3HHeJ_P0084781 Chrdl2 protein_coding protein_coding MGP_C3HHeJ_T0084782.1 MGP_C3HHeJ_G0032261.1 mouse_genomes_project 7 103039921 103065009 + MGP_C3HHeJ_P0084782 Chrdl2 protein_coding protein_coding MGP_C3HHeJ_T0084783.1 MGP_C3HHeJ_G0032261.1 mouse_genomes_project 7 103052299 103065007 + MGP_C3HHeJ_P0084783 Chrdl2 protein_coding protein_coding MGP_C3HHeJ_T0010740.1 MGP_C3HHeJ_G0008873.1 mouse_genomes_project 7 114334 114414 + Mir293 miRNA miRNA MGP_C3HHeJ_T0085207.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108640073 108668895 - MGP_C3HHeJ_P0085207 Fam160a2 protein_coding protein_coding MGP_C3HHeJ_T0085208.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108640073 108668917 - MGP_C3HHeJ_P0085208 Fam160a2 protein_coding protein_coding MGP_C3HHeJ_T0085210.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108647472 108668917 - MGP_C3HHeJ_P0085210 Fam160a2 protein_coding protein_coding MGP_C3HHeJ_T0085211.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108647472 108668848 - MGP_C3HHeJ_P0085211 Fam160a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085212.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108647473 108668874 - MGP_C3HHeJ_P0085212 Fam160a2 protein_coding protein_coding MGP_C3HHeJ_T0085213.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108647473 108668871 - MGP_C3HHeJ_P0085213 Fam160a2 protein_coding protein_coding MGP_C3HHeJ_T0085214.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108647938 108650844 - Fam160a2 protein_coding retained_intron MGP_C3HHeJ_T0085215.1 MGP_C3HHeJ_G0032444.1 mouse_genomes_project 7 108654250 108657974 - Fam160a2 protein_coding retained_intron MGP_C3HHeJ_T0080940.1 MGP_C3HHeJ_G0031243.1 mouse_genomes_project 7 1107790 1123892 - MGP_C3HHeJ_P0080940 1700027J19Rik protein_coding protein_coding MGP_C3HHeJ_T0080941.1 MGP_C3HHeJ_G0031243.1 mouse_genomes_project 7 1108081 1123571 - MGP_C3HHeJ_P0080941 1700027J19Rik protein_coding protein_coding MGP_C3HHeJ_T0080942.1 MGP_C3HHeJ_G0031243.1 mouse_genomes_project 7 1108306 1123474 - MGP_C3HHeJ_P0080942 1700027J19Rik protein_coding protein_coding MGP_C3HHeJ_T0002217.1 MGP_C3HHeJ_G0002138.1 mouse_genomes_project 7 75928876 75931972 - TEC TEC MGP_C3HHeJ_T0002218.1 MGP_C3HHeJ_G0002138.1 mouse_genomes_project 7 75929840 75931865 - TEC TEC MGP_C3HHeJ_T0085432.1 MGP_C3HHeJ_G0032545.1 mouse_genomes_project 7 113184789 113201138 - MGP_C3HHeJ_P0085432 Tmem9b protein_coding protein_coding MGP_C3HHeJ_T0085433.1 MGP_C3HHeJ_G0032545.1 mouse_genomes_project 7 113194313 113201206 - MGP_C3HHeJ_P0085433 Tmem9b protein_coding protein_coding MGP_C3HHeJ_T0084109.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81492704 81502679 - Mfge8 protein_coding retained_intron MGP_C3HHeJ_T0084110.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81492704 81507957 - MGP_C3HHeJ_P0084110 Mfge8 protein_coding protein_coding MGP_C3HHeJ_T0084111.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81492705 81507964 - MGP_C3HHeJ_P0084111 Mfge8 protein_coding protein_coding MGP_C3HHeJ_T0084112.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81493052 81507935 - MGP_C3HHeJ_P0084112 Mfge8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084113.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81493075 81495924 - Mfge8 protein_coding retained_intron MGP_C3HHeJ_T0084114.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81495431 81501700 - Mfge8 protein_coding retained_intron MGP_C3HHeJ_T0084115.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81500770 81501943 - Mfge8 protein_coding retained_intron MGP_C3HHeJ_T0084116.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81501761 81506468 - Mfge8 protein_coding processed_transcript MGP_C3HHeJ_T0084117.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81503815 81507893 - Mfge8 protein_coding retained_intron MGP_C3HHeJ_T0084118.1 MGP_C3HHeJ_G0032089.1 mouse_genomes_project 7 81504229 81507138 - Mfge8 protein_coding processed_transcript MGP_C3HHeJ_T0081057.1 MGP_C3HHeJ_G0031265.1 mouse_genomes_project 7 1766941 1773032 - MGP_C3HHeJ_P0081057 Tmem238 protein_coding protein_coding MGP_C3HHeJ_T0081058.1 MGP_C3HHeJ_G0031265.1 mouse_genomes_project 7 1767556 1772449 - MGP_C3HHeJ_P0081058 Tmem238 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008771.1 MGP_C3HHeJ_G0007079.1 mouse_genomes_project 7 40372578 40380040 - lincRNA lincRNA MGP_C3HHeJ_T0008772.1 MGP_C3HHeJ_G0007079.1 mouse_genomes_project 7 40372582 40380057 - lincRNA lincRNA MGP_C3HHeJ_T0008773.1 MGP_C3HHeJ_G0007079.1 mouse_genomes_project 7 40372583 40380078 - lincRNA lincRNA MGP_C3HHeJ_T0008927.1 MGP_C3HHeJ_G0007184.1 mouse_genomes_project 7 129213457 129261346 - 4933440M02Rik lincRNA lincRNA MGP_C3HHeJ_T0008928.1 MGP_C3HHeJ_G0007184.1 mouse_genomes_project 7 129252855 129272877 - 4933440M02Rik lincRNA lincRNA MGP_C3HHeJ_T0008929.1 MGP_C3HHeJ_G0007184.1 mouse_genomes_project 7 129254994 129272893 - 4933440M02Rik lincRNA lincRNA MGP_C3HHeJ_T0015590.1 MGP_C3HHeJ_G0013694.1 mouse_genomes_project 7 43057102 43057224 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083424.1 MGP_C3HHeJ_G0031930.1 mouse_genomes_project 7 46577102 46582304 - MGP_C3HHeJ_P0083424 Bax protein_coding protein_coding MGP_C3HHeJ_T0005183.1 MGP_C3HHeJ_G0004396.1 mouse_genomes_project 7 99682431 99692568 - Gm15413 antisense antisense MGP_C3HHeJ_T0008738.1 MGP_C3HHeJ_G0007050.1 mouse_genomes_project 7 24717409 24721410 + Gm26707 lincRNA lincRNA MGP_C3HHeJ_T0086959.1 MGP_C3HHeJ_G0032855.1 mouse_genomes_project 7 144588165 144629982 - MGP_C3HHeJ_P0086959 Tubgcp2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085588.1 MGP_C3HHeJ_G0032581.1 mouse_genomes_project 7 118143845 118156628 - MGP_C3HHeJ_P0085588 Cyp2r1 protein_coding protein_coding MGP_C3HHeJ_T0085589.1 MGP_C3HHeJ_G0032581.1 mouse_genomes_project 7 118143901 118156626 - MGP_C3HHeJ_P0085589 Cyp2r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085590.1 MGP_C3HHeJ_G0032581.1 mouse_genomes_project 7 118143912 118156618 - MGP_C3HHeJ_P0085590 Cyp2r1 protein_coding protein_coding MGP_C3HHeJ_T0085591.1 MGP_C3HHeJ_G0032581.1 mouse_genomes_project 7 118143926 118148413 - Cyp2r1 protein_coding processed_transcript MGP_C3HHeJ_T0085592.1 MGP_C3HHeJ_G0032581.1 mouse_genomes_project 7 118143926 118148409 - MGP_C3HHeJ_P0085592 Cyp2r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085593.1 MGP_C3HHeJ_G0032581.1 mouse_genomes_project 7 118143928 118156618 - MGP_C3HHeJ_P0085593 Cyp2r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011602.1 MGP_C3HHeJ_G0009735.1 mouse_genomes_project 7 134727504 134727580 - Gm27884 misc_RNA misc_RNA MGP_C3HHeJ_T0081083.1 MGP_C3HHeJ_G0031275.1 mouse_genomes_project 7 1979451 1985319 - MGP_C3HHeJ_P0081083 Sbk3 protein_coding protein_coding MGP_C3HHeJ_T0081084.1 MGP_C3HHeJ_G0031275.1 mouse_genomes_project 7 1981718 1985526 - MGP_C3HHeJ_P0081084 Sbk3 protein_coding protein_coding MGP_C3HHeJ_T0082360.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423197 28426897 - MGP_C3HHeJ_P0082360 Fam98c protein_coding protein_coding MGP_C3HHeJ_T0082361.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423198 28426870 - Fam98c protein_coding retained_intron MGP_C3HHeJ_T0082362.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423198 28426890 - Fam98c protein_coding retained_intron MGP_C3HHeJ_T0082363.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423198 28426870 - Fam98c protein_coding retained_intron MGP_C3HHeJ_T0082364.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423198 28426870 - MGP_C3HHeJ_P0082364 Fam98c protein_coding protein_coding MGP_C3HHeJ_T0082365.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423205 28426847 - MGP_C3HHeJ_P0082365 Fam98c protein_coding protein_coding MGP_C3HHeJ_T0082366.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28423240 28426406 - MGP_C3HHeJ_P0082366 Fam98c protein_coding protein_coding MGP_C3HHeJ_T0082367.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28424079 28426921 - MGP_C3HHeJ_P0082367 Fam98c protein_coding protein_coding MGP_C3HHeJ_T0082368.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28424110 28426290 - MGP_C3HHeJ_P0082368 Fam98c protein_coding protein_coding MGP_C3HHeJ_T0082369.1 MGP_C3HHeJ_G0031676.1 mouse_genomes_project 7 28424193 28426890 - Fam98c protein_coding processed_transcript MGP_C3HHeJ_T0083170.1 MGP_C3HHeJ_G0031869.1 mouse_genomes_project 7 45514445 45516814 + MGP_C3HHeJ_P0083170 Aspdh protein_coding protein_coding MGP_C3HHeJ_T0083171.1 MGP_C3HHeJ_G0031869.1 mouse_genomes_project 7 45514463 45516390 + MGP_C3HHeJ_P0083171 Aspdh protein_coding protein_coding MGP_C3HHeJ_T0083172.1 MGP_C3HHeJ_G0031869.1 mouse_genomes_project 7 45514471 45516277 + MGP_C3HHeJ_P0083172 Aspdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083173.1 MGP_C3HHeJ_G0031869.1 mouse_genomes_project 7 45514480 45516268 + Aspdh protein_coding retained_intron MGP_C3HHeJ_T0083174.1 MGP_C3HHeJ_G0031869.1 mouse_genomes_project 7 45514498 45516372 + Aspdh protein_coding processed_transcript MGP_C3HHeJ_T0083175.1 MGP_C3HHeJ_G0031869.1 mouse_genomes_project 7 45515524 45516751 + MGP_C3HHeJ_P0083175 Aspdh protein_coding protein_coding MGP_C3HHeJ_T0008879.1 MGP_C3HHeJ_G0007152.1 mouse_genomes_project 7 92810145 92815513 - 2310010J17Rik lincRNA lincRNA MGP_C3HHeJ_T0015633.1 MGP_C3HHeJ_G0013737.1 mouse_genomes_project 7 71661641 71662640 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081408.1 MGP_C3HHeJ_G0031409.1 mouse_genomes_project 7 14297619 14364839 - MGP_C3HHeJ_P0081408 Sae1 protein_coding protein_coding MGP_C3HHeJ_T0082641.1 MGP_C3HHeJ_G0031741.1 mouse_genomes_project 7 30072263 30073147 - MGP_C3HHeJ_P0082641 Pmis2 protein_coding protein_coding MGP_C3HHeJ_T0082642.1 MGP_C3HHeJ_G0031741.1 mouse_genomes_project 7 30072298 30073142 - Pmis2 protein_coding processed_transcript MGP_C3HHeJ_T0084188.1 MGP_C3HHeJ_G0032103.1 mouse_genomes_project 7 82271524 82319126 - MGP_C3HHeJ_P0084188 Ap3s2 protein_coding protein_coding MGP_C3HHeJ_T0084189.1 MGP_C3HHeJ_G0032103.1 mouse_genomes_project 7 82278711 82319073 - MGP_C3HHeJ_P0084189 Ap3s2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0102299.1 MGP_C3HHeJ_G0040262.1 mouse_genomes_project 7 106394075 106394928 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101477.1 MGP_C3HHeJ_G0039478.1 mouse_genomes_project 7 42266464 42266933 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0085047.1 MGP_C3HHeJ_G0032318.1 mouse_genomes_project 7 105825970 105826924 + MGP_C3HHeJ_P0085047 Olfr552 protein_coding protein_coding MGP_C3HHeJ_T0085285.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109030695 109037011 + MGP_C3HHeJ_P0085285 Ilk protein_coding protein_coding MGP_C3HHeJ_T0085286.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109030774 109037004 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085287.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109030828 109037011 + MGP_C3HHeJ_P0085287 Ilk protein_coding protein_coding MGP_C3HHeJ_T0085288.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109030836 109035129 + MGP_C3HHeJ_P0085288 Ilk protein_coding protein_coding MGP_C3HHeJ_T0085289.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109031204 109035447 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085290.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109031226 109035561 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085292.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109034273 109035850 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085293.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109034596 109035260 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085294.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109034596 109035994 + MGP_C3HHeJ_P0085294 Ilk protein_coding protein_coding MGP_C3HHeJ_T0085295.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109035057 109035996 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085296.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109035267 109036182 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085297.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109035668 109036862 + Ilk protein_coding retained_intron MGP_C3HHeJ_T0085298.1 MGP_C3HHeJ_G0032457.1 mouse_genomes_project 7 109035866 109036743 + Ilk protein_coding processed_transcript MGP_C3HHeJ_T0102209.1 MGP_C3HHeJ_G0040172.1 mouse_genomes_project 7 31020572 31021828 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082629.1 MGP_C3HHeJ_G0031736.1 mouse_genomes_project 7 29998655 30014293 - MGP_C3HHeJ_P0082629 Upk1a protein_coding protein_coding MGP_C3HHeJ_T0102269.1 MGP_C3HHeJ_G0040232.1 mouse_genomes_project 7 87626853 87627073 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086086.1 MGP_C3HHeJ_G0032683.1 mouse_genomes_project 7 130517187 130538517 - MGP_C3HHeJ_P0086086 Eif3c protein_coding protein_coding MGP_C3HHeJ_T0086087.1 MGP_C3HHeJ_G0032683.1 mouse_genomes_project 7 130533619 130538464 - MGP_C3HHeJ_P0086087 Eif3c protein_coding protein_coding MGP_C3HHeJ_T0086088.1 MGP_C3HHeJ_G0032683.1 mouse_genomes_project 7 130534034 130538310 - MGP_C3HHeJ_P0086088 Eif3c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085486.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114274185 114275353 - Rnf141 protein_coding retained_intron MGP_C3HHeJ_T0085487.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114274367 114295930 - MGP_C3HHeJ_P0085487 Rnf141 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085488.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114288122 114320169 - MGP_C3HHeJ_P0085488 Rnf141 protein_coding protein_coding MGP_C3HHeJ_T0085489.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114290175 114320126 - MGP_C3HHeJ_P0085489 Rnf141 protein_coding protein_coding MGP_C3HHeJ_T0085490.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114291048 114295876 - MGP_C3HHeJ_P0085490 Rnf141 protein_coding protein_coding MGP_C3HHeJ_T0085491.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114291184 114296201 - Rnf141 protein_coding retained_intron MGP_C3HHeJ_T0085492.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114305247 114320178 - Rnf141 protein_coding processed_transcript MGP_C3HHeJ_T0085493.1 MGP_C3HHeJ_G0032558.1 mouse_genomes_project 7 114308352 114319933 - MGP_C3HHeJ_P0085493 Rnf141 protein_coding protein_coding MGP_C3HHeJ_T0002203.1 MGP_C3HHeJ_G0002124.1 mouse_genomes_project 7 65821003 65822578 + TEC TEC MGP_C3HHeJ_T0081500.1 MGP_C3HHeJ_G0031440.1 mouse_genomes_project 7 16539887 16785492 - MGP_C3HHeJ_P0081500 protein_coding protein_coding MGP_C3HHeJ_T0081501.1 MGP_C3HHeJ_G0031440.1 mouse_genomes_project 7 16546274 16780944 - protein_coding processed_transcript MGP_C3HHeJ_T0081508.1 MGP_C3HHeJ_G0031440.1 mouse_genomes_project 7 16782637 16973491 - MGP_C3HHeJ_P0081508 protein_coding protein_coding MGP_C3HHeJ_T0082956.1 MGP_C3HHeJ_G0031801.1 mouse_genomes_project 7 36935690 37014076 + MGP_C3HHeJ_P0082956 Tshz3 protein_coding protein_coding MGP_C3HHeJ_T0082957.1 MGP_C3HHeJ_G0031801.1 mouse_genomes_project 7 36935692 36939589 + Tshz3 protein_coding processed_transcript MGP_C3HHeJ_T0087178.1 MGP_C3HHeJ_G0032925.1 mouse_genomes_project 7 146110730 146113712 - MGP_C3HHeJ_P0087178 Cend1 protein_coding protein_coding MGP_C3HHeJ_T0087179.1 MGP_C3HHeJ_G0032925.1 mouse_genomes_project 7 146110730 146113778 - MGP_C3HHeJ_P0087179 Cend1 protein_coding protein_coding MGP_C3HHeJ_T0087180.1 MGP_C3HHeJ_G0032925.1 mouse_genomes_project 7 146110735 146113705 - MGP_C3HHeJ_P0087180 Cend1 protein_coding protein_coding MGP_C3HHeJ_T0087181.1 MGP_C3HHeJ_G0032925.1 mouse_genomes_project 7 146110735 146113638 - MGP_C3HHeJ_P0087181 Cend1 protein_coding protein_coding MGP_C3HHeJ_T0085383.1 MGP_C3HHeJ_G0032524.1 mouse_genomes_project 7 112050894 112051969 - MGP_C3HHeJ_P0085383 Olfr509 protein_coding protein_coding MGP_C3HHeJ_T0082482.1 MGP_C3HHeJ_G0031709.1 mouse_genomes_project 7 29601011 29612623 - MGP_C3HHeJ_P0082482 Tbcb protein_coding protein_coding MGP_C3HHeJ_T0082483.1 MGP_C3HHeJ_G0031709.1 mouse_genomes_project 7 29601013 29605489 - Tbcb protein_coding processed_transcript MGP_C3HHeJ_T0082484.1 MGP_C3HHeJ_G0031709.1 mouse_genomes_project 7 29601017 29605550 - Tbcb protein_coding retained_intron MGP_C3HHeJ_T0081118.1 MGP_C3HHeJ_G0031294.1 mouse_genomes_project 7 2912280 2913243 - MGP_C3HHeJ_P0081118 Vmn1r64 protein_coding protein_coding MGP_C3HHeJ_T0085181.1 MGP_C3HHeJ_G0032418.1 mouse_genomes_project 7 107785061 107785988 - MGP_C3HHeJ_P0085181 Olfr655 protein_coding protein_coding MGP_C3HHeJ_T0083630.1 MGP_C3HHeJ_G0031979.1 mouse_genomes_project 7 48072584 48089408 + MGP_C3HHeJ_P0083630 Ldhc protein_coding protein_coding MGP_C3HHeJ_T0083631.1 MGP_C3HHeJ_G0031979.1 mouse_genomes_project 7 48072703 48087054 + MGP_C3HHeJ_P0083631 Ldhc protein_coding protein_coding MGP_C3HHeJ_T0083632.1 MGP_C3HHeJ_G0031979.1 mouse_genomes_project 7 48072777 48087740 + MGP_C3HHeJ_P0083632 Ldhc protein_coding protein_coding MGP_C3HHeJ_T0082026.1 MGP_C3HHeJ_G0031591.1 mouse_genomes_project 7 25258108 25288415 + MGP_C3HHeJ_P0082026 Cyp2a4 protein_coding protein_coding MGP_C3HHeJ_T0086179.1 MGP_C3HHeJ_G0032696.1 mouse_genomes_project 7 130778675 130782753 + MGP_C3HHeJ_P0086179 Tbx6 protein_coding protein_coding MGP_C3HHeJ_T0086180.1 MGP_C3HHeJ_G0032696.1 mouse_genomes_project 7 130778675 130782552 + MGP_C3HHeJ_P0086180 Tbx6 protein_coding protein_coding MGP_C3HHeJ_T0086834.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138081622 138144081 - MGP_C3HHeJ_P0086834 Dhx32 protein_coding protein_coding MGP_C3HHeJ_T0086835.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138081626 138126001 - Dhx32 protein_coding processed_transcript MGP_C3HHeJ_T0086836.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138081790 138151564 - MGP_C3HHeJ_P0086836 Dhx32 protein_coding protein_coding MGP_C3HHeJ_T0086837.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138081908 138125413 - MGP_C3HHeJ_P0086837 Dhx32 protein_coding protein_coding MGP_C3HHeJ_T0086838.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138083724 138094143 - Dhx32 protein_coding processed_transcript MGP_C3HHeJ_T0086839.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138113338 138125204 - Dhx32 protein_coding processed_transcript MGP_C3HHeJ_T0086840.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138113638 138125561 - MGP_C3HHeJ_P0086840 Dhx32 protein_coding protein_coding MGP_C3HHeJ_T0086841.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138113783 138143965 - MGP_C3HHeJ_P0086841 Dhx32 protein_coding protein_coding MGP_C3HHeJ_T0086842.1 MGP_C3HHeJ_G0032822.1 mouse_genomes_project 7 138125409 138143787 - MGP_C3HHeJ_P0086842 Dhx32 protein_coding protein_coding MGP_C3HHeJ_T0086965.1 MGP_C3HHeJ_G0032859.1 mouse_genomes_project 7 144688682 144692328 + MGP_C3HHeJ_P0086965 Prap1 protein_coding protein_coding MGP_C3HHeJ_T0085038.1 MGP_C3HHeJ_G0032310.1 mouse_genomes_project 7 105694515 105695645 - MGP_C3HHeJ_P0085038 Olfr543 protein_coding protein_coding MGP_C3HHeJ_T0082872.1 MGP_C3HHeJ_G0031786.1 mouse_genomes_project 7 35268669 35271305 + MGP_C3HHeJ_P0082872 Cebpa protein_coding protein_coding MGP_C3HHeJ_T0082873.1 MGP_C3HHeJ_G0031786.1 mouse_genomes_project 7 35268679 35271305 + MGP_C3HHeJ_P0082873 Cebpa protein_coding protein_coding MGP_C3HHeJ_T0082650.1 MGP_C3HHeJ_G0031745.1 mouse_genomes_project 7 30127308 30130698 - MGP_C3HHeJ_P0082650 Gapdhs protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082651.1 MGP_C3HHeJ_G0031745.1 mouse_genomes_project 7 30127313 30142448 - MGP_C3HHeJ_P0082651 Gapdhs protein_coding protein_coding MGP_C3HHeJ_T0082652.1 MGP_C3HHeJ_G0031745.1 mouse_genomes_project 7 30127420 30137958 - MGP_C3HHeJ_P0082652 Gapdhs protein_coding protein_coding MGP_C3HHeJ_T0008905.1 MGP_C3HHeJ_G0007170.1 mouse_genomes_project 7 117909122 118005231 - 4933406I18Rik lincRNA lincRNA MGP_C3HHeJ_T0008906.1 MGP_C3HHeJ_G0007170.1 mouse_genomes_project 7 117951516 118005091 - 4933406I18Rik lincRNA lincRNA MGP_C3HHeJ_T0084660.1 MGP_C3HHeJ_G0032229.1 mouse_genomes_project 7 100602079 100623815 + MGP_C3HHeJ_P0084660 Clns1a protein_coding protein_coding MGP_C3HHeJ_T0084661.1 MGP_C3HHeJ_G0032229.1 mouse_genomes_project 7 100602140 100618507 + Clns1a protein_coding retained_intron MGP_C3HHeJ_T0084662.1 MGP_C3HHeJ_G0032229.1 mouse_genomes_project 7 100622743 100625735 + Clns1a protein_coding retained_intron MGP_C3HHeJ_T0083055.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44440326 44455165 + MGP_C3HHeJ_P0083055 Etfb protein_coding protein_coding MGP_C3HHeJ_T0083056.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44440362 44455029 + MGP_C3HHeJ_P0083056 Etfb protein_coding protein_coding MGP_C3HHeJ_T0083058.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44440373 44453938 + MGP_C3HHeJ_P0083058 Etfb protein_coding protein_coding MGP_C3HHeJ_T0083060.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44440393 44455146 + MGP_C3HHeJ_P0083060 Etfb protein_coding protein_coding MGP_C3HHeJ_T0083061.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44450253 44455146 + MGP_C3HHeJ_P0083061 Etfb protein_coding protein_coding MGP_C3HHeJ_T0083062.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44453865 44455145 + Etfb protein_coding processed_transcript MGP_C3HHeJ_T0083063.1 MGP_C3HHeJ_G0031831.1 mouse_genomes_project 7 44454400 44455148 + Etfb protein_coding processed_transcript MGP_C3HHeJ_T0008862.1 MGP_C3HHeJ_G0007144.1 mouse_genomes_project 7 81965916 81971729 - Gm45169 lincRNA lincRNA MGP_C3HHeJ_T0086369.1 MGP_C3HHeJ_G0032734.1 mouse_genomes_project 7 131451381 131454090 - MGP_C3HHeJ_P0086369 protein_coding protein_coding MGP_C3HHeJ_T0080866.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 566967 582776 - MGP_C3HHeJ_P0080866 Mboat7 protein_coding protein_coding MGP_C3HHeJ_T0080867.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 566971 581367 - MGP_C3HHeJ_P0080867 Mboat7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080868.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 567580 581116 - MGP_C3HHeJ_P0080868 Mboat7 protein_coding protein_coding MGP_C3HHeJ_T0080869.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 567953 573566 - Mboat7 protein_coding retained_intron MGP_C3HHeJ_T0080870.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 572395 582205 - Mboat7 protein_coding retained_intron MGP_C3HHeJ_T0080871.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 574641 582444 - MGP_C3HHeJ_P0080871 Mboat7 protein_coding protein_coding MGP_C3HHeJ_T0080872.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 574996 582141 - MGP_C3HHeJ_P0080872 Mboat7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080873.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 575012 582141 - MGP_C3HHeJ_P0080873 Mboat7 protein_coding protein_coding MGP_C3HHeJ_T0080874.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 577673 582015 - MGP_C3HHeJ_P0080874 Mboat7 protein_coding protein_coding MGP_C3HHeJ_T0080875.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 578102 582215 - Mboat7 protein_coding retained_intron MGP_C3HHeJ_T0080876.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 578400 582033 - Mboat7 protein_coding retained_intron MGP_C3HHeJ_T0080877.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 578928 582191 - Mboat7 protein_coding retained_intron MGP_C3HHeJ_T0080878.1 MGP_C3HHeJ_G0031231.1 mouse_genomes_project 7 580949 581907 - Mboat7 protein_coding retained_intron MGP_C3HHeJ_T0081502.1 MGP_C3HHeJ_G0031441.1 mouse_genomes_project 7 16636455 16839694 - protein_coding retained_intron MGP_C3HHeJ_T0081504.1 MGP_C3HHeJ_G0031441.1 mouse_genomes_project 7 16779562 16839691 - MGP_C3HHeJ_P0081504 protein_coding protein_coding MGP_C3HHeJ_T0085393.1 MGP_C3HHeJ_G0032534.1 mouse_genomes_project 7 112342934 112351469 + MGP_C3HHeJ_P0085393 Eif3f protein_coding protein_coding MGP_C3HHeJ_T0085394.1 MGP_C3HHeJ_G0032534.1 mouse_genomes_project 7 112346912 112348994 + Eif3f protein_coding retained_intron MGP_C3HHeJ_T0085395.1 MGP_C3HHeJ_G0032534.1 mouse_genomes_project 7 112348825 112349526 + Eif3f protein_coding retained_intron MGP_C3HHeJ_T0084426.1 MGP_C3HHeJ_G0032149.1 mouse_genomes_project 7 85187074 85214120 + MGP_C3HHeJ_P0084426 Efl1 protein_coding protein_coding MGP_C3HHeJ_T0084427.1 MGP_C3HHeJ_G0032149.1 mouse_genomes_project 7 85187074 85316309 + MGP_C3HHeJ_P0084427 Efl1 protein_coding protein_coding MGP_C3HHeJ_T0084428.1 MGP_C3HHeJ_G0032149.1 mouse_genomes_project 7 85187089 85237742 + Efl1 protein_coding retained_intron MGP_C3HHeJ_T0084429.1 MGP_C3HHeJ_G0032149.1 mouse_genomes_project 7 85187101 85316309 + MGP_C3HHeJ_P0084429 Efl1 protein_coding protein_coding MGP_C3HHeJ_T0084430.1 MGP_C3HHeJ_G0032149.1 mouse_genomes_project 7 85209794 85214109 + Efl1 protein_coding processed_transcript MGP_C3HHeJ_T0015512.1 MGP_C3HHeJ_G0013616.1 mouse_genomes_project 7 11550617 11550831 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085240.1 MGP_C3HHeJ_G0032451.1 mouse_genomes_project 7 108878840 108888351 - MGP_C3HHeJ_P0085240 Hpx protein_coding protein_coding MGP_C3HHeJ_T0085241.1 MGP_C3HHeJ_G0032451.1 mouse_genomes_project 7 108878909 108888807 - MGP_C3HHeJ_P0085241 Hpx protein_coding unknown_likely_coding MGP_C3HHeJ_T0087435.1 MGP_C3HHeJ_G0032971.1 mouse_genomes_project 7 148255805 148258506 - MGP_C3HHeJ_P0087435 Cdkn1c protein_coding protein_coding MGP_C3HHeJ_T0087436.1 MGP_C3HHeJ_G0032971.1 mouse_genomes_project 7 148255805 148258506 - MGP_C3HHeJ_P0087436 Cdkn1c protein_coding protein_coding MGP_C3HHeJ_T0083576.1 MGP_C3HHeJ_G0031969.1 mouse_genomes_project 7 47576199 47578803 + MGP_C3HHeJ_P0083576 Myod1 protein_coding protein_coding MGP_C3HHeJ_T0102222.1 MGP_C3HHeJ_G0040185.1 mouse_genomes_project 7 35614481 35617153 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0087015.1 MGP_C3HHeJ_G0032883.1 mouse_genomes_project 7 145280103 145281063 + MGP_C3HHeJ_P0087015 Olfr539 protein_coding protein_coding MGP_C3HHeJ_T0010777.1 MGP_C3HHeJ_G0008910.1 mouse_genomes_project 7 46109728 46109790 - Mir7054 miRNA miRNA MGP_C3HHeJ_T0008765.1 MGP_C3HHeJ_G0007076.1 mouse_genomes_project 7 38347654 38366276 + Gm44635 lincRNA lincRNA MGP_C3HHeJ_T0082135.1 MGP_C3HHeJ_G0031618.1 mouse_genomes_project 7 26554174 26557771 + MGP_C3HHeJ_P0082135 Sertad3 protein_coding protein_coding MGP_C3HHeJ_T0005093.1 MGP_C3HHeJ_G0004331.1 mouse_genomes_project 7 22805876 22809976 - Gm44793 antisense antisense MGP_C3HHeJ_T0010744.1 MGP_C3HHeJ_G0008877.1 mouse_genomes_project 7 538907 538993 + Mir3572 miRNA miRNA MGP_C3HHeJ_T0102311.1 MGP_C3HHeJ_G0040274.1 mouse_genomes_project 7 107458821 107459698 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081053.1 MGP_C3HHeJ_G0031263.1 mouse_genomes_project 7 1751485 1759597 - MGP_C3HHeJ_P0081053 Il11 protein_coding protein_coding MGP_C3HHeJ_T0081054.1 MGP_C3HHeJ_G0031263.1 mouse_genomes_project 7 1753895 1765242 - MGP_C3HHeJ_P0081054 Il11 protein_coding protein_coding MGP_C3HHeJ_T0015557.1 MGP_C3HHeJ_G0013661.1 mouse_genomes_project 7 30105766 30106294 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083954.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68780849 68922734 + Adamts17 protein_coding retained_intron MGP_C3HHeJ_T0083955.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68780849 68980973 + Adamts17 protein_coding retained_intron MGP_C3HHeJ_T0083956.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68780849 69110678 + MGP_C3HHeJ_P0083956 Adamts17 protein_coding protein_coding MGP_C3HHeJ_T0083957.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68780927 69110682 + MGP_C3HHeJ_P0083957 Adamts17 protein_coding protein_coding MGP_C3HHeJ_T0083958.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68783369 69016351 + Adamts17 protein_coding processed_transcript MGP_C3HHeJ_T0083959.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68791732 68813953 + Adamts17 protein_coding processed_transcript MGP_C3HHeJ_T0083960.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 68864175 68922734 + Adamts17 protein_coding processed_transcript MGP_C3HHeJ_T0083961.1 MGP_C3HHeJ_G0032060.1 mouse_genomes_project 7 69000206 69033423 + MGP_C3HHeJ_P0083961 Adamts17 protein_coding protein_coding MGP_C3HHeJ_T0015508.1 MGP_C3HHeJ_G0013612.1 mouse_genomes_project 7 11078210 11079000 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010824.1 MGP_C3HHeJ_G0008957.1 mouse_genomes_project 7 114276234 114276341 + miRNA miRNA MGP_C3HHeJ_T0002233.1 MGP_C3HHeJ_G0002153.1 mouse_genomes_project 7 81272443 81274074 - TEC TEC MGP_C3HHeJ_T0084899.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104484617 104495969 + MGP_C3HHeJ_P0084899 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084900.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104484829 104495843 + MGP_C3HHeJ_P0084900 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084901.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104485354 104495978 + MGP_C3HHeJ_P0084901 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084902.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104495806 104536111 + MGP_C3HHeJ_P0084902 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084903.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104495806 104535544 + MGP_C3HHeJ_P0084903 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084904.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104501198 104510502 + MGP_C3HHeJ_P0084904 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084905.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104505661 104508428 + Arap1 protein_coding processed_transcript MGP_C3HHeJ_T0084906.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104506854 104510172 + MGP_C3HHeJ_P0084906 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084907.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104508231 104510420 + MGP_C3HHeJ_P0084907 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084908.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104508236 104510812 + MGP_C3HHeJ_P0084908 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084909.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104518363 104536810 + MGP_C3HHeJ_P0084909 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084910.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104518383 104536810 + MGP_C3HHeJ_P0084910 Arap1 protein_coding protein_coding MGP_C3HHeJ_T0084911.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104518625 104520098 + Arap1 protein_coding retained_intron MGP_C3HHeJ_T0084912.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104519815 104522327 + Arap1 protein_coding processed_transcript MGP_C3HHeJ_T0084913.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104522312 104523499 + Arap1 protein_coding processed_transcript MGP_C3HHeJ_T0084914.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104525749 104533261 + Arap1 protein_coding retained_intron MGP_C3HHeJ_T0084915.1 MGP_C3HHeJ_G0032284.1 mouse_genomes_project 7 104531820 104535902 + Arap1 protein_coding retained_intron MGP_C3HHeJ_T0102187.1 MGP_C3HHeJ_G0040151.1 mouse_genomes_project 7 12528819 12529076 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008833.1 MGP_C3HHeJ_G0007126.1 mouse_genomes_project 7 75478618 75483931 + 4930429H19Rik lincRNA lincRNA MGP_C3HHeJ_T0008834.1 MGP_C3HHeJ_G0007126.1 mouse_genomes_project 7 75478768 75480193 + 4930429H19Rik lincRNA lincRNA MGP_C3HHeJ_T0082999.1 MGP_C3HHeJ_G0031810.1 mouse_genomes_project 7 42019389 42044035 - MGP_C3HHeJ_P0082999 AI987944 protein_coding protein_coding MGP_C3HHeJ_T0083000.1 MGP_C3HHeJ_G0031810.1 mouse_genomes_project 7 42020915 42044154 - MGP_C3HHeJ_P0083000 AI987944 protein_coding protein_coding MGP_C3HHeJ_T0086355.1 MGP_C3HHeJ_G0032728.1 mouse_genomes_project 7 131297761 131299932 - MGP_C3HHeJ_P0086355 protein_coding protein_coding MGP_C3HHeJ_T0081131.1 MGP_C3HHeJ_G0031299.1 mouse_genomes_project 7 3246662 3267390 + MGP_C3HHeJ_P0081131 Galp protein_coding protein_coding MGP_C3HHeJ_T0081132.1 MGP_C3HHeJ_G0031299.1 mouse_genomes_project 7 3252582 3262622 + Galp protein_coding processed_transcript MGP_C3HHeJ_T0082765.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30547764 30566694 - MGP_C3HHeJ_P0082765 Hpn protein_coding protein_coding MGP_C3HHeJ_T0082766.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30547764 30562401 - MGP_C3HHeJ_P0082766 Hpn protein_coding protein_coding MGP_C3HHeJ_T0082767.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30547764 30566686 - MGP_C3HHeJ_P0082767 Hpn protein_coding protein_coding MGP_C3HHeJ_T0082768.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30547764 30566679 - MGP_C3HHeJ_P0082768 Hpn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082769.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30547768 30551556 - MGP_C3HHeJ_P0082769 Hpn protein_coding protein_coding MGP_C3HHeJ_T0082770.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30547772 30548325 - MGP_C3HHeJ_P0082770 Hpn protein_coding protein_coding MGP_C3HHeJ_T0082771.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30548277 30549323 - Hpn protein_coding retained_intron MGP_C3HHeJ_T0082772.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30551234 30552232 - Hpn protein_coding retained_intron MGP_C3HHeJ_T0082773.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30551539 30552505 - Hpn protein_coding retained_intron MGP_C3HHeJ_T0082774.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30560539 30563362 - MGP_C3HHeJ_P0082774 Hpn protein_coding protein_coding MGP_C3HHeJ_T0082775.1 MGP_C3HHeJ_G0031762.1 mouse_genomes_project 7 30561969 30562413 - Hpn protein_coding retained_intron MGP_C3HHeJ_T0015715.1 MGP_C3HHeJ_G0013819.1 mouse_genomes_project 7 130716144 130716618 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005230.1 MGP_C3HHeJ_G0004430.1 mouse_genomes_project 7 136452432 136453563 + Gm15677 antisense antisense MGP_C3HHeJ_T0008730.1 MGP_C3HHeJ_G0007044.1 mouse_genomes_project 7 23163325 23166298 + Gm44512 lincRNA lincRNA MGP_C3HHeJ_T0081202.1 MGP_C3HHeJ_G0031341.1 mouse_genomes_project 7 9737800 9738727 + MGP_C3HHeJ_P0081202 Vmn1r80 protein_coding protein_coding MGP_C3HHeJ_T0084404.1 MGP_C3HHeJ_G0032144.1 mouse_genomes_project 7 84411606 84465147 - MGP_C3HHeJ_P0084404 Hdgfrp3 protein_coding protein_coding MGP_C3HHeJ_T0084405.1 MGP_C3HHeJ_G0032144.1 mouse_genomes_project 7 84422339 84465133 - MGP_C3HHeJ_P0084405 Hdgfrp3 protein_coding protein_coding MGP_C3HHeJ_T0084406.1 MGP_C3HHeJ_G0032144.1 mouse_genomes_project 7 84427677 84464698 - Hdgfrp3 protein_coding retained_intron MGP_C3HHeJ_T0083995.1 MGP_C3HHeJ_G0032065.1 mouse_genomes_project 7 69693744 69725518 - MGP_C3HHeJ_P0083995 Synm protein_coding protein_coding MGP_C3HHeJ_T0083996.1 MGP_C3HHeJ_G0032065.1 mouse_genomes_project 7 69693744 69725518 - MGP_C3HHeJ_P0083996 Synm protein_coding protein_coding MGP_C3HHeJ_T0083290.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939503 45945026 + MGP_C3HHeJ_P0083290 Pnkp protein_coding protein_coding MGP_C3HHeJ_T0083291.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939515 45939870 + MGP_C3HHeJ_P0083291 Pnkp protein_coding protein_coding MGP_C3HHeJ_T0083292.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939523 45945368 + MGP_C3HHeJ_P0083292 Pnkp protein_coding protein_coding MGP_C3HHeJ_T0083293.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939531 45945032 + Pnkp protein_coding retained_intron MGP_C3HHeJ_T0083294.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939537 45942800 + MGP_C3HHeJ_P0083294 Pnkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083295.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939704 45943727 + MGP_C3HHeJ_P0083295 Pnkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083296.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939706 45945025 + MGP_C3HHeJ_P0083296 Pnkp protein_coding protein_coding MGP_C3HHeJ_T0083297.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939712 45945026 + MGP_C3HHeJ_P0083297 Pnkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083298.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939743 45945017 + MGP_C3HHeJ_P0083298 Pnkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083299.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45939758 45945026 + MGP_C3HHeJ_P0083299 Pnkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083300.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45942046 45945024 + Pnkp protein_coding retained_intron MGP_C3HHeJ_T0083301.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45942798 45943745 + Pnkp protein_coding retained_intron MGP_C3HHeJ_T0083302.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45943750 45945026 + MGP_C3HHeJ_P0083302 Pnkp protein_coding non_stop_decay MGP_C3HHeJ_T0083303.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45943889 45945024 + MGP_C3HHeJ_P0083303 Pnkp protein_coding protein_coding MGP_C3HHeJ_T0083304.1 MGP_C3HHeJ_G0031889.1 mouse_genomes_project 7 45944072 45945046 + Pnkp protein_coding retained_intron MGP_C3HHeJ_T0008974.1 MGP_C3HHeJ_G0007213.1 mouse_genomes_project 7 144546076 144547111 - Gm2044 lincRNA lincRNA MGP_C3HHeJ_T0081340.1 MGP_C3HHeJ_G0031392.1 mouse_genomes_project 7 13782292 13796483 - MGP_C3HHeJ_P0081340 Crx protein_coding protein_coding MGP_C3HHeJ_T0081341.1 MGP_C3HHeJ_G0031392.1 mouse_genomes_project 7 13782293 13789143 - MGP_C3HHeJ_P0081341 Crx protein_coding protein_coding MGP_C3HHeJ_T0081342.1 MGP_C3HHeJ_G0031392.1 mouse_genomes_project 7 13783571 13796387 - Crx protein_coding processed_transcript MGP_C3HHeJ_T0081343.1 MGP_C3HHeJ_G0031392.1 mouse_genomes_project 7 13783571 13796359 - MGP_C3HHeJ_P0081343 Crx protein_coding protein_coding MGP_C3HHeJ_T0081344.1 MGP_C3HHeJ_G0031392.1 mouse_genomes_project 7 13784401 13788185 - MGP_C3HHeJ_P0081344 Crx protein_coding protein_coding MGP_C3HHeJ_T0008823.1 MGP_C3HHeJ_G0007117.1 mouse_genomes_project 7 74090502 74160942 + 1700011C11Rik lincRNA lincRNA MGP_C3HHeJ_T0010789.1 MGP_C3HHeJ_G0008922.1 mouse_genomes_project 7 63399384 63399453 - Mir344d-1 miRNA miRNA MGP_C3HHeJ_T0085527.1 MGP_C3HHeJ_G0032565.1 mouse_genomes_project 7 115622594 115670235 - MGP_C3HHeJ_P0085527 Dkk3 protein_coding protein_coding MGP_C3HHeJ_T0008938.1 MGP_C3HHeJ_G0007191.1 mouse_genomes_project 7 130836029 130845679 + Gm44854 lincRNA lincRNA MGP_C3HHeJ_T0081778.1 MGP_C3HHeJ_G0031530.1 mouse_genomes_project 7 23053175 23059246 + MGP_C3HHeJ_P0081778 Lypd5 protein_coding protein_coding MGP_C3HHeJ_T0085177.1 MGP_C3HHeJ_G0032415.1 mouse_genomes_project 7 107751099 107752160 + MGP_C3HHeJ_P0085177 Olfr652 protein_coding protein_coding MGP_C3HHeJ_T0085178.1 MGP_C3HHeJ_G0032415.1 mouse_genomes_project 7 107751179 107752127 + MGP_C3HHeJ_P0085178 Olfr652 protein_coding protein_coding MGP_C3HHeJ_T0010754.1 MGP_C3HHeJ_G0008887.1 mouse_genomes_project 7 21920373 21920478 + Gm25196 miRNA miRNA MGP_C3HHeJ_T0085911.1 MGP_C3HHeJ_G0032653.1 mouse_genomes_project 7 126071579 126077119 + MGP_C3HHeJ_P0085911 Chp2 protein_coding protein_coding MGP_C3HHeJ_T0085912.1 MGP_C3HHeJ_G0032653.1 mouse_genomes_project 7 126075867 126076478 + Chp2 protein_coding processed_transcript MGP_C3HHeJ_T0085192.1 MGP_C3HHeJ_G0032429.1 mouse_genomes_project 7 108157802 108158756 + MGP_C3HHeJ_P0085192 Olfr669 protein_coding protein_coding MGP_C3HHeJ_T0082631.1 MGP_C3HHeJ_G0031738.1 mouse_genomes_project 7 30035287 30037524 - MGP_C3HHeJ_P0082631 Etv2 protein_coding protein_coding MGP_C3HHeJ_T0010774.1 MGP_C3HHeJ_G0008907.1 mouse_genomes_project 7 45519402 45519467 + Mir7052 miRNA miRNA MGP_C3HHeJ_T0087397.1 MGP_C3HHeJ_G0032965.1 mouse_genomes_project 7 147761166 147763609 - MGP_C3HHeJ_P0087397 Ascl2 protein_coding protein_coding MGP_C3HHeJ_T0087398.1 MGP_C3HHeJ_G0032965.1 mouse_genomes_project 7 147761173 147763609 - MGP_C3HHeJ_P0087398 Ascl2 protein_coding protein_coding MGP_C3HHeJ_T0102238.1 MGP_C3HHeJ_G0040201.1 mouse_genomes_project 7 45072248 45074495 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008712.1 MGP_C3HHeJ_G0007028.1 mouse_genomes_project 7 287065 303598 - Gm44257 lincRNA lincRNA MGP_C3HHeJ_T0015645.1 MGP_C3HHeJ_G0013749.1 mouse_genomes_project 7 78008191 78008543 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098543.1 MGP_C3HHeJ_G0036743.1 mouse_genomes_project 7 123224397 123226646 - Gm26967 sense_intronic sense_intronic MGP_C3HHeJ_T0085201.1 MGP_C3HHeJ_G0032438.1 mouse_genomes_project 7 108555476 108556481 + MGP_C3HHeJ_P0085201 Olfr688 protein_coding protein_coding MGP_C3HHeJ_T0082111.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26413194 26430578 - MGP_C3HHeJ_P0082111 Shkbp1 protein_coding protein_coding MGP_C3HHeJ_T0082112.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26413198 26430513 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0082113.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26413198 26430302 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0082114.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26413199 26416676 - Shkbp1 protein_coding processed_transcript MGP_C3HHeJ_T0082115.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26413473 26413983 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0082116.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26414217 26420452 - Shkbp1 protein_coding processed_transcript MGP_C3HHeJ_T0082117.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26416052 26419479 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0082118.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26420124 26422634 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0082119.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26424965 26430318 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0082120.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26425006 26430481 - Shkbp1 protein_coding processed_transcript MGP_C3HHeJ_T0082122.1 MGP_C3HHeJ_G0031614.1 mouse_genomes_project 7 26428637 26430330 - Shkbp1 protein_coding retained_intron MGP_C3HHeJ_T0085786.1 MGP_C3HHeJ_G0032618.1 mouse_genomes_project 7 123601443 123646793 - MGP_C3HHeJ_P0085786 Dcun1d3 protein_coding protein_coding MGP_C3HHeJ_T0085787.1 MGP_C3HHeJ_G0032618.1 mouse_genomes_project 7 123604095 123646591 - MGP_C3HHeJ_P0085787 Dcun1d3 protein_coding protein_coding MGP_C3HHeJ_T0085788.1 MGP_C3HHeJ_G0032618.1 mouse_genomes_project 7 123605607 123647339 - MGP_C3HHeJ_P0085788 Dcun1d3 protein_coding protein_coding MGP_C3HHeJ_T0085789.1 MGP_C3HHeJ_G0032618.1 mouse_genomes_project 7 123606274 123610119 - MGP_C3HHeJ_P0085789 Dcun1d3 protein_coding protein_coding MGP_C3HHeJ_T0085790.1 MGP_C3HHeJ_G0032618.1 mouse_genomes_project 7 123607907 123610091 - MGP_C3HHeJ_P0085790 Dcun1d3 protein_coding protein_coding MGP_C3HHeJ_T0015714.1 MGP_C3HHeJ_G0013818.1 mouse_genomes_project 7 130190713 130190961 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083713.1 MGP_C3HHeJ_G0032010.1 mouse_genomes_project 7 53413778 53415469 - MGP_C3HHeJ_P0083713 Fancf protein_coding protein_coding MGP_C3HHeJ_T0083332.1 MGP_C3HHeJ_G0031905.1 mouse_genomes_project 7 46180185 46189483 - MGP_C3HHeJ_P0083332 Rcn3 protein_coding protein_coding MGP_C3HHeJ_T0010770.1 MGP_C3HHeJ_G0008903.1 mouse_genomes_project 7 29984939 29984997 + Mir3569 miRNA miRNA MGP_C3HHeJ_T0080823.1 MGP_C3HHeJ_G0031222.1 mouse_genomes_project 7 343016 354430 + MGP_C3HHeJ_P0080823 Cacng6 protein_coding protein_coding MGP_C3HHeJ_T0080824.1 MGP_C3HHeJ_G0031222.1 mouse_genomes_project 7 343483 353926 + MGP_C3HHeJ_P0080824 Cacng6 protein_coding protein_coding MGP_C3HHeJ_T0008770.1 MGP_C3HHeJ_G0007078.1 mouse_genomes_project 7 40261798 40262369 - lincRNA lincRNA MGP_C3HHeJ_T0081320.1 MGP_C3HHeJ_G0031382.1 mouse_genomes_project 7 12103249 12105370 - MGP_C3HHeJ_P0081320 Obox8 protein_coding protein_coding MGP_C3HHeJ_T0081311.1 MGP_C3HHeJ_G0031375.1 mouse_genomes_project 7 11181323 11198383 - MGP_C3HHeJ_P0081311 Bsph2 protein_coding protein_coding MGP_C3HHeJ_T0081312.1 MGP_C3HHeJ_G0031375.1 mouse_genomes_project 7 11181325 11198383 - MGP_C3HHeJ_P0081312 Bsph2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098173.1 MGP_C3HHeJ_G0036385.1 mouse_genomes_project 7 18429007 18429126 - n-R5s152 rRNA rRNA MGP_C3HHeJ_T0082056.1 MGP_C3HHeJ_G0031602.1 mouse_genomes_project 7 26210874 26217473 + MGP_C3HHeJ_P0082056 Cyp2t4 protein_coding protein_coding MGP_C3HHeJ_T0082057.1 MGP_C3HHeJ_G0031602.1 mouse_genomes_project 7 26213321 26217577 + MGP_C3HHeJ_P0082057 Cyp2t4 protein_coding protein_coding MGP_C3HHeJ_T0008836.1 MGP_C3HHeJ_G0007128.1 mouse_genomes_project 7 75813530 75814265 - Gm44738 lincRNA lincRNA MGP_C3HHeJ_T0082626.1 MGP_C3HHeJ_G0031735.1 mouse_genomes_project 7 29985240 29988502 - MGP_C3HHeJ_P0082626 Zbtb32 protein_coding protein_coding MGP_C3HHeJ_T0082627.1 MGP_C3HHeJ_G0031735.1 mouse_genomes_project 7 29985242 29994429 - MGP_C3HHeJ_P0082627 Zbtb32 protein_coding protein_coding MGP_C3HHeJ_T0082628.1 MGP_C3HHeJ_G0031735.1 mouse_genomes_project 7 29993491 29994469 - Zbtb32 protein_coding processed_transcript MGP_C3HHeJ_T0081176.1 MGP_C3HHeJ_G0031319.1 mouse_genomes_project 7 4217655 4224411 - MGP_C3HHeJ_P0081176 Zfp954 protein_coding protein_coding MGP_C3HHeJ_T0081309.1 MGP_C3HHeJ_G0031374.1 mouse_genomes_project 7 11083458 11105323 + MGP_C3HHeJ_P0081309 Bsph1 protein_coding protein_coding MGP_C3HHeJ_T0081310.1 MGP_C3HHeJ_G0031374.1 mouse_genomes_project 7 11083473 11105253 + MGP_C3HHeJ_P0081310 Bsph1 protein_coding protein_coding MGP_C3HHeJ_T0085760.1 MGP_C3HHeJ_G0032613.1 mouse_genomes_project 7 123417365 123445264 + MGP_C3HHeJ_P0085760 Acsm4 protein_coding protein_coding MGP_C3HHeJ_T0085761.1 MGP_C3HHeJ_G0032613.1 mouse_genomes_project 7 123420672 123445041 + MGP_C3HHeJ_P0085761 Acsm4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081744.1 MGP_C3HHeJ_G0031521.1 mouse_genomes_project 7 22805746 22820705 + MGP_C3HHeJ_P0081744 Zfp112 protein_coding protein_coding MGP_C3HHeJ_T0081745.1 MGP_C3HHeJ_G0031521.1 mouse_genomes_project 7 22805746 22821164 + MGP_C3HHeJ_P0081745 Zfp112 protein_coding protein_coding MGP_C3HHeJ_T0081746.1 MGP_C3HHeJ_G0031521.1 mouse_genomes_project 7 22805782 22807875 + Zfp112 protein_coding retained_intron MGP_C3HHeJ_T0081747.1 MGP_C3HHeJ_G0031521.1 mouse_genomes_project 7 22805799 22820447 + MGP_C3HHeJ_P0081747 Zfp112 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087271.1 MGP_C3HHeJ_G0032939.1 mouse_genomes_project 7 146558537 146586135 - MGP_C3HHeJ_P0087271 Tollip protein_coding protein_coding MGP_C3HHeJ_T0087272.1 MGP_C3HHeJ_G0032939.1 mouse_genomes_project 7 146565296 146586028 - MGP_C3HHeJ_P0087272 Tollip protein_coding protein_coding MGP_C3HHeJ_T0087273.1 MGP_C3HHeJ_G0032939.1 mouse_genomes_project 7 146575708 146586143 - MGP_C3HHeJ_P0087273 Tollip protein_coding protein_coding MGP_C3HHeJ_T0085852.1 MGP_C3HHeJ_G0032639.1 mouse_genomes_project 7 124880640 124962647 + MGP_C3HHeJ_P0085852 Otoa protein_coding protein_coding MGP_C3HHeJ_T0085853.1 MGP_C3HHeJ_G0032639.1 mouse_genomes_project 7 124880726 124899545 + MGP_C3HHeJ_P0085853 Otoa protein_coding protein_coding MGP_C3HHeJ_T0085854.1 MGP_C3HHeJ_G0032639.1 mouse_genomes_project 7 124880742 124888884 + MGP_C3HHeJ_P0085854 Otoa protein_coding protein_coding MGP_C3HHeJ_T0085855.1 MGP_C3HHeJ_G0032639.1 mouse_genomes_project 7 124880742 124888902 + MGP_C3HHeJ_P0085855 Otoa protein_coding protein_coding MGP_C3HHeJ_T0085856.1 MGP_C3HHeJ_G0032639.1 mouse_genomes_project 7 124916067 124959386 + Otoa protein_coding retained_intron MGP_C3HHeJ_T0085857.1 MGP_C3HHeJ_G0032639.1 mouse_genomes_project 7 124916072 124962641 + Otoa protein_coding processed_transcript MGP_C3HHeJ_T0010847.1 MGP_C3HHeJ_G0008980.1 mouse_genomes_project 7 147360654 147360738 - Mir675 miRNA miRNA MGP_C3HHeJ_T0100865.1 MGP_C3HHeJ_G0039059.1 mouse_genomes_project 7 131585601 131585731 + Snora30 snoRNA snoRNA MGP_C3HHeJ_T0002281.1 MGP_C3HHeJ_G0002201.1 mouse_genomes_project 7 147919668 147919903 + TEC TEC MGP_C3HHeJ_T0005120.1 MGP_C3HHeJ_G0004353.1 mouse_genomes_project 7 30607091 30615794 + Gm10640 antisense antisense MGP_C3HHeJ_T0005121.1 MGP_C3HHeJ_G0004353.1 mouse_genomes_project 7 30614601 30622782 + Gm10640 antisense antisense MGP_C3HHeJ_T0081251.1 MGP_C3HHeJ_G0031360.1 mouse_genomes_project 7 10562993 10563786 - Slc27a5 protein_coding processed_transcript MGP_C3HHeJ_T0081252.1 MGP_C3HHeJ_G0031360.1 mouse_genomes_project 7 10562993 10573291 - MGP_C3HHeJ_P0081252 Slc27a5 protein_coding protein_coding MGP_C3HHeJ_T0081253.1 MGP_C3HHeJ_G0031360.1 mouse_genomes_project 7 10562999 10573333 - MGP_C3HHeJ_P0081253 Slc27a5 protein_coding protein_coding MGP_C3HHeJ_T0081254.1 MGP_C3HHeJ_G0031360.1 mouse_genomes_project 7 10568130 10571702 - Slc27a5 protein_coding retained_intron MGP_C3HHeJ_T0081255.1 MGP_C3HHeJ_G0031360.1 mouse_genomes_project 7 10568130 10572818 - MGP_C3HHeJ_P0081255 Slc27a5 protein_coding protein_coding MGP_C3HHeJ_T0081197.1 MGP_C3HHeJ_G0031336.1 mouse_genomes_project 7 9236610 9237522 + MGP_C3HHeJ_P0081197 Vmn1r73 protein_coding protein_coding MGP_C3HHeJ_T0085242.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108893301 108925207 - MGP_C3HHeJ_P0085242 Trim3 protein_coding protein_coding MGP_C3HHeJ_T0085243.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108899334 108925259 - MGP_C3HHeJ_P0085243 Trim3 protein_coding protein_coding MGP_C3HHeJ_T0085244.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108899512 108925236 - MGP_C3HHeJ_P0085244 Trim3 protein_coding protein_coding MGP_C3HHeJ_T0085245.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108900003 108900721 - Trim3 protein_coding retained_intron MGP_C3HHeJ_T0085246.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108901172 108902270 - Trim3 protein_coding retained_intron MGP_C3HHeJ_T0085247.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108905895 108906891 - Trim3 protein_coding retained_intron MGP_C3HHeJ_T0085248.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108907648 108925224 - MGP_C3HHeJ_P0085248 Trim3 protein_coding protein_coding MGP_C3HHeJ_T0085249.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108907970 108925270 - Trim3 protein_coding processed_transcript MGP_C3HHeJ_T0085250.1 MGP_C3HHeJ_G0032452.1 mouse_genomes_project 7 108908247 108925184 - MGP_C3HHeJ_P0085250 Trim3 protein_coding protein_coding MGP_C3HHeJ_T0005162.1 MGP_C3HHeJ_G0004382.1 mouse_genomes_project 7 82126490 82127675 + Gm44706 antisense antisense MGP_C3HHeJ_T0082922.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35766659 35821735 + MGP_C3HHeJ_P0082922 Ankrd27 protein_coding protein_coding MGP_C3HHeJ_T0082923.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35766665 35790336 + MGP_C3HHeJ_P0082923 Ankrd27 protein_coding protein_coding MGP_C3HHeJ_T0082924.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35766665 35783035 + MGP_C3HHeJ_P0082924 Ankrd27 protein_coding protein_coding MGP_C3HHeJ_T0082925.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35766670 35816893 + MGP_C3HHeJ_P0082925 Ankrd27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082926.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35766690 35785278 + MGP_C3HHeJ_P0082926 Ankrd27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082927.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35766692 35821735 + MGP_C3HHeJ_P0082927 Ankrd27 protein_coding protein_coding MGP_C3HHeJ_T0082928.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35782817 35785748 + Ankrd27 protein_coding retained_intron MGP_C3HHeJ_T0082929.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35793748 35796643 + Ankrd27 protein_coding retained_intron MGP_C3HHeJ_T0082930.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35797546 35810058 + MGP_C3HHeJ_P0082930 Ankrd27 protein_coding protein_coding MGP_C3HHeJ_T0082931.1 MGP_C3HHeJ_G0031797.1 mouse_genomes_project 7 35801077 35809153 + MGP_C3HHeJ_P0082931 Ankrd27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085951.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127176957 127270155 - MGP_C3HHeJ_P0085951 Arhgap17 protein_coding protein_coding MGP_C3HHeJ_T0085952.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127177010 127270190 - MGP_C3HHeJ_P0085952 Arhgap17 protein_coding protein_coding MGP_C3HHeJ_T0085953.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127177010 127270190 - MGP_C3HHeJ_P0085953 Arhgap17 protein_coding protein_coding MGP_C3HHeJ_T0085954.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127177014 127270182 - MGP_C3HHeJ_P0085954 Arhgap17 protein_coding protein_coding MGP_C3HHeJ_T0085955.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127177019 127270207 - MGP_C3HHeJ_P0085955 Arhgap17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085956.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127177124 127270189 - MGP_C3HHeJ_P0085956 Arhgap17 protein_coding protein_coding MGP_C3HHeJ_T0085957.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127180676 127183981 - Arhgap17 protein_coding retained_intron MGP_C3HHeJ_T0085958.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127184725 127194330 - Arhgap17 protein_coding retained_intron MGP_C3HHeJ_T0085959.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127193018 127270219 - Arhgap17 protein_coding retained_intron MGP_C3HHeJ_T0085960.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127220283 127270219 - MGP_C3HHeJ_P0085960 Arhgap17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085961.1 MGP_C3HHeJ_G0032659.1 mouse_genomes_project 7 127269080 127270180 - Arhgap17 protein_coding retained_intron MGP_C3HHeJ_T0102244.1 MGP_C3HHeJ_G0040207.1 mouse_genomes_project 7 48848339 48849176 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008847.1 MGP_C3HHeJ_G0007137.1 mouse_genomes_project 7 77991755 77994764 - AU020206 lincRNA lincRNA MGP_C3HHeJ_T0008848.1 MGP_C3HHeJ_G0007137.1 mouse_genomes_project 7 77992479 78006049 - AU020206 lincRNA lincRNA MGP_C3HHeJ_T0015711.1 MGP_C3HHeJ_G0013815.1 mouse_genomes_project 7 129151209 129151647 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083810.1 MGP_C3HHeJ_G0032027.1 mouse_genomes_project 7 61313019 61348877 - MGP_C3HHeJ_P0083810 Gm38393 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083811.1 MGP_C3HHeJ_G0032027.1 mouse_genomes_project 7 61313019 61348877 - MGP_C3HHeJ_P0083811 Gm38393 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083812.1 MGP_C3HHeJ_G0032027.1 mouse_genomes_project 7 61316586 61321496 - Gm38393 protein_coding processed_transcript MGP_C3HHeJ_T0083813.1 MGP_C3HHeJ_G0032027.1 mouse_genomes_project 7 61321329 61321752 - Gm38393 protein_coding processed_transcript MGP_C3HHeJ_T0084476.1 MGP_C3HHeJ_G0032168.1 mouse_genomes_project 7 88723526 88750847 - MGP_C3HHeJ_P0084476 Vmn2r75 protein_coding protein_coding MGP_C3HHeJ_T0082474.1 MGP_C3HHeJ_G0031706.1 mouse_genomes_project 7 29545494 29555877 + MGP_C3HHeJ_P0082474 Gm5113 protein_coding protein_coding MGP_C3HHeJ_T0010737.1 MGP_C3HHeJ_G0008870.1 mouse_genomes_project 7 113263 113345 + Mir292 miRNA miRNA MGP_C3HHeJ_T0084466.1 MGP_C3HHeJ_G0032162.1 mouse_genomes_project 7 86841868 87008011 - MGP_C3HHeJ_P0084466 Arnt2 protein_coding protein_coding MGP_C3HHeJ_T0080818.1 MGP_C3HHeJ_G0031220.1 mouse_genomes_project 7 236648 276088 + MGP_C3HHeJ_P0080818 Cacng7 protein_coding protein_coding MGP_C3HHeJ_T0080819.1 MGP_C3HHeJ_G0031220.1 mouse_genomes_project 7 241903 274766 + Cacng7 protein_coding retained_intron MGP_C3HHeJ_T0102150.1 MGP_C3HHeJ_G0040114.1 mouse_genomes_project 7 7664748 7668561 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082658.1 MGP_C3HHeJ_G0031747.1 mouse_genomes_project 7 30169667 30187508 + MGP_C3HHeJ_P0082658 Dmkn protein_coding protein_coding MGP_C3HHeJ_T0082659.1 MGP_C3HHeJ_G0031747.1 mouse_genomes_project 7 30169674 30187507 + MGP_C3HHeJ_P0082659 Dmkn protein_coding protein_coding MGP_C3HHeJ_T0082660.1 MGP_C3HHeJ_G0031747.1 mouse_genomes_project 7 30169710 30187507 + MGP_C3HHeJ_P0082660 Dmkn protein_coding protein_coding MGP_C3HHeJ_T0082661.1 MGP_C3HHeJ_G0031747.1 mouse_genomes_project 7 30182087 30187512 + MGP_C3HHeJ_P0082661 Dmkn protein_coding protein_coding MGP_C3HHeJ_T0081027.1 MGP_C3HHeJ_G0031259.1 mouse_genomes_project 7 1680505 1700937 - MGP_C3HHeJ_P0081027 Tmem150b protein_coding protein_coding MGP_C3HHeJ_T0081029.1 MGP_C3HHeJ_G0031259.1 mouse_genomes_project 7 1690961 1700770 - MGP_C3HHeJ_P0081029 Tmem150b protein_coding protein_coding MGP_C3HHeJ_T0102182.1 MGP_C3HHeJ_G0040146.1 mouse_genomes_project 7 12419721 12420739 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083694.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51254332 51337884 + MGP_C3HHeJ_P0083694 Prmt3 protein_coding protein_coding MGP_C3HHeJ_T0083695.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51254332 51259341 + MGP_C3HHeJ_P0083695 Prmt3 protein_coding protein_coding MGP_C3HHeJ_T0083696.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51254423 51258999 + Prmt3 protein_coding processed_transcript MGP_C3HHeJ_T0083697.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51254423 51305268 + MGP_C3HHeJ_P0083697 Prmt3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083698.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51254425 51256631 + Prmt3 protein_coding processed_transcript MGP_C3HHeJ_T0083699.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51254530 51264169 + Prmt3 protein_coding processed_transcript MGP_C3HHeJ_T0083700.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51255864 51264199 + MGP_C3HHeJ_P0083700 Prmt3 protein_coding protein_coding MGP_C3HHeJ_T0083701.1 MGP_C3HHeJ_G0032004.1 mouse_genomes_project 7 51275882 51305464 + MGP_C3HHeJ_P0083701 Prmt3 protein_coding protein_coding MGP_C3HHeJ_T0082795.1 MGP_C3HHeJ_G0031769.1 mouse_genomes_project 7 33776708 33778831 - MGP_C3HHeJ_P0082795 Scgb2b24 protein_coding protein_coding MGP_C3HHeJ_T0010848.1 MGP_C3HHeJ_G0008981.1 mouse_genomes_project 7 147441132 147441205 - Mir483 miRNA miRNA MGP_C3HHeJ_T0099567.1 MGP_C3HHeJ_G0037761.1 mouse_genomes_project 7 17611073 17611233 + Gm25134 snRNA snRNA MGP_C3HHeJ_T0015593.1 MGP_C3HHeJ_G0013697.1 mouse_genomes_project 7 43324251 43325986 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008841.1 MGP_C3HHeJ_G0007132.1 mouse_genomes_project 7 76018072 76028143 + lincRNA lincRNA MGP_C3HHeJ_T0085460.1 MGP_C3HHeJ_G0032553.1 mouse_genomes_project 7 113587174 113606873 + MGP_C3HHeJ_P0085460 Wee1 protein_coding protein_coding MGP_C3HHeJ_T0084482.1 MGP_C3HHeJ_G0032173.1 mouse_genomes_project 7 88931335 88932347 - MGP_C3HHeJ_P0084482 Olfr307 protein_coding protein_coding MGP_C3HHeJ_T0085071.1 MGP_C3HHeJ_G0032340.1 mouse_genomes_project 7 106270765 106271589 + MGP_C3HHeJ_P0085071 Olfr582 protein_coding protein_coding MGP_C3HHeJ_T0085114.1 MGP_C3HHeJ_G0032380.1 mouse_genomes_project 7 107143985 107145485 - MGP_C3HHeJ_P0085114 Hbb-y protein_coding protein_coding MGP_C3HHeJ_T0083537.1 MGP_C3HHeJ_G0031959.1 mouse_genomes_project 7 47039180 47050656 - Syngr4 protein_coding processed_transcript MGP_C3HHeJ_T0083538.1 MGP_C3HHeJ_G0031959.1 mouse_genomes_project 7 47040877 47049727 - MGP_C3HHeJ_P0083538 Syngr4 protein_coding protein_coding MGP_C3HHeJ_T0085157.1 MGP_C3HHeJ_G0032409.1 mouse_genomes_project 7 107553359 107562949 - MGP_C3HHeJ_P0085157 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085158.1 MGP_C3HHeJ_G0032409.1 mouse_genomes_project 7 107553359 107569654 - MGP_C3HHeJ_P0085158 protein_coding protein_coding MGP_C3HHeJ_T0083384.1 MGP_C3HHeJ_G0031921.1 mouse_genomes_project 7 46441318 46445009 + MGP_C3HHeJ_P0083384 Hrc protein_coding protein_coding MGP_C3HHeJ_T0081697.1 MGP_C3HHeJ_G0031498.1 mouse_genomes_project 7 18154164 18172755 - MGP_C3HHeJ_P0081697 Bcam protein_coding protein_coding MGP_C3HHeJ_T0081698.1 MGP_C3HHeJ_G0031498.1 mouse_genomes_project 7 18154593 18154988 - Bcam protein_coding retained_intron MGP_C3HHeJ_T0081699.1 MGP_C3HHeJ_G0031498.1 mouse_genomes_project 7 18164152 18172703 - Bcam protein_coding retained_intron MGP_C3HHeJ_T0081700.1 MGP_C3HHeJ_G0031498.1 mouse_genomes_project 7 18167786 18173224 - MGP_C3HHeJ_P0081700 Bcam protein_coding protein_coding MGP_C3HHeJ_T0081701.1 MGP_C3HHeJ_G0031498.1 mouse_genomes_project 7 18169166 18172703 - MGP_C3HHeJ_P0081701 Bcam protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015699.1 MGP_C3HHeJ_G0013803.1 mouse_genomes_project 7 116887434 116887836 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084395.1 MGP_C3HHeJ_G0032142.1 mouse_genomes_project 7 84385500 84385762 - MGP_C3HHeJ_P0084395 Gm10160 protein_coding protein_coding MGP_C3HHeJ_T0002229.1 MGP_C3HHeJ_G0002149.1 mouse_genomes_project 7 78954911 78956479 - TEC TEC MGP_C3HHeJ_T0085362.1 MGP_C3HHeJ_G0032503.1 mouse_genomes_project 7 111388044 111388946 - MGP_C3HHeJ_P0085362 protein_coding protein_coding MGP_C3HHeJ_T0102212.1 MGP_C3HHeJ_G0040175.1 mouse_genomes_project 7 33596171 33597445 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102271.1 MGP_C3HHeJ_G0040234.1 mouse_genomes_project 7 87673943 88172393 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081348.1 MGP_C3HHeJ_G0031395.1 mouse_genomes_project 7 13863831 13872097 - MGP_C3HHeJ_P0081348 Gltscr2 protein_coding protein_coding MGP_C3HHeJ_T0081349.1 MGP_C3HHeJ_G0031395.1 mouse_genomes_project 7 13863842 13871766 - Gltscr2 protein_coding retained_intron MGP_C3HHeJ_T0081350.1 MGP_C3HHeJ_G0031395.1 mouse_genomes_project 7 13868863 13872071 - Gltscr2 protein_coding processed_transcript MGP_C3HHeJ_T0081165.1 MGP_C3HHeJ_G0031316.1 mouse_genomes_project 7 3746047 3772977 - MGP_C3HHeJ_P0081165 Zim1 protein_coding protein_coding MGP_C3HHeJ_T0081166.1 MGP_C3HHeJ_G0031316.1 mouse_genomes_project 7 3751531 3772956 - MGP_C3HHeJ_P0081166 Zim1 protein_coding protein_coding MGP_C3HHeJ_T0081167.1 MGP_C3HHeJ_G0031316.1 mouse_genomes_project 7 3752446 3764196 - MGP_C3HHeJ_P0081167 Zim1 protein_coding protein_coding MGP_C3HHeJ_T0081832.1 MGP_C3HHeJ_G0031545.1 mouse_genomes_project 7 23443042 23452962 + MGP_C3HHeJ_P0081832 BC049730 protein_coding protein_coding MGP_C3HHeJ_T0085316.1 MGP_C3HHeJ_G0032465.1 mouse_genomes_project 7 110015958 110016906 - MGP_C3HHeJ_P0085316 Olfr694 protein_coding protein_coding MGP_C3HHeJ_T0085986.1 MGP_C3HHeJ_G0032667.1 mouse_genomes_project 7 129527901 129555986 + MGP_C3HHeJ_P0085986 Il21r protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085987.1 MGP_C3HHeJ_G0032667.1 mouse_genomes_project 7 129546645 129557779 + MGP_C3HHeJ_P0085987 Il21r protein_coding protein_coding MGP_C3HHeJ_T0008725.1 MGP_C3HHeJ_G0007039.1 mouse_genomes_project 7 17308797 17311654 - Gm26821 lincRNA lincRNA MGP_C3HHeJ_T0080969.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1439232 1459067 - MGP_C3HHeJ_P0080969 Ppp1r12c protein_coding protein_coding MGP_C3HHeJ_T0080970.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1439232 1459386 - MGP_C3HHeJ_P0080970 Ppp1r12c protein_coding protein_coding MGP_C3HHeJ_T0080971.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1439235 1441745 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080972.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1439300 1440347 - Ppp1r12c protein_coding processed_transcript MGP_C3HHeJ_T0080973.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1441346 1442212 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080974.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1441652 1443027 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080975.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1441729 1443421 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080976.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1442918 1443645 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080977.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1443863 1444447 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080978.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1446867 1459370 - Ppp1r12c protein_coding retained_intron MGP_C3HHeJ_T0080979.1 MGP_C3HHeJ_G0031249.1 mouse_genomes_project 7 1447506 1459235 - MGP_C3HHeJ_P0080979 Ppp1r12c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085388.1 MGP_C3HHeJ_G0032529.1 mouse_genomes_project 7 112255779 112256724 - MGP_C3HHeJ_P0085388 Olfr516 protein_coding protein_coding MGP_C3HHeJ_T0011607.1 MGP_C3HHeJ_G0009740.1 mouse_genomes_project 7 148069783 148069978 + Gm27389 misc_RNA misc_RNA MGP_C3HHeJ_T0008890.1 MGP_C3HHeJ_G0007161.1 mouse_genomes_project 7 101622125 101645952 - Gm15506 lincRNA lincRNA MGP_C3HHeJ_T0083214.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45585885 45601611 - MGP_C3HHeJ_P0083214 Pold1 protein_coding protein_coding MGP_C3HHeJ_T0083215.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45585888 45587057 - Pold1 protein_coding retained_intron MGP_C3HHeJ_T0083216.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45585890 45601613 - Pold1 protein_coding retained_intron MGP_C3HHeJ_T0083217.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45585893 45588224 - Pold1 protein_coding retained_intron MGP_C3HHeJ_T0083218.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45585925 45601602 - MGP_C3HHeJ_P0083218 Pold1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083219.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45586419 45587328 - Pold1 protein_coding retained_intron MGP_C3HHeJ_T0083220.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45587034 45589091 - Pold1 protein_coding retained_intron MGP_C3HHeJ_T0083221.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45590652 45591552 - Pold1 protein_coding retained_intron MGP_C3HHeJ_T0083222.1 MGP_C3HHeJ_G0031875.1 mouse_genomes_project 7 45595226 45601497 - MGP_C3HHeJ_P0083222 Pold1 protein_coding protein_coding MGP_C3HHeJ_T0102233.1 MGP_C3HHeJ_G0040196.1 mouse_genomes_project 7 45019846 45020646 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081825.1 MGP_C3HHeJ_G0031541.1 mouse_genomes_project 7 23307528 23330296 + MGP_C3HHeJ_P0081825 Ethe1 protein_coding protein_coding MGP_C3HHeJ_T0082980.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38482869 38497004 + MGP_C3HHeJ_P0082980 1600014C10Rik protein_coding protein_coding MGP_C3HHeJ_T0082981.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38482892 38483552 + 1600014C10Rik protein_coding processed_transcript MGP_C3HHeJ_T0082982.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38482913 38496030 + MGP_C3HHeJ_P0082982 1600014C10Rik protein_coding protein_coding MGP_C3HHeJ_T0082983.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38483305 38497004 + MGP_C3HHeJ_P0082983 1600014C10Rik protein_coding protein_coding MGP_C3HHeJ_T0082984.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38483500 38488584 + MGP_C3HHeJ_P0082984 1600014C10Rik protein_coding protein_coding MGP_C3HHeJ_T0082985.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38483550 38494412 + MGP_C3HHeJ_P0082985 1600014C10Rik protein_coding protein_coding MGP_C3HHeJ_T0082986.1 MGP_C3HHeJ_G0031805.1 mouse_genomes_project 7 38485916 38494704 + MGP_C3HHeJ_P0082986 1600014C10Rik protein_coding protein_coding MGP_C3HHeJ_T0080999.1 MGP_C3HHeJ_G0031252.1 mouse_genomes_project 7 1482092 1491619 - MGP_C3HHeJ_P0080999 Dnaaf3 protein_coding protein_coding MGP_C3HHeJ_T0010764.1 MGP_C3HHeJ_G0008897.1 mouse_genomes_project 7 28309077 28309143 + Gm44408 miRNA miRNA MGP_C3HHeJ_T0008844.1 MGP_C3HHeJ_G0007135.1 mouse_genomes_project 7 77050679 77088499 - 0610006L08Rik lincRNA lincRNA MGP_C3HHeJ_T0008845.1 MGP_C3HHeJ_G0007135.1 mouse_genomes_project 7 77055472 77088496 - 0610006L08Rik lincRNA lincRNA MGP_C3HHeJ_T0010833.1 MGP_C3HHeJ_G0008966.1 mouse_genomes_project 7 131545307 131545398 + miRNA miRNA MGP_C3HHeJ_T0102303.1 MGP_C3HHeJ_G0040266.1 mouse_genomes_project 7 106891577 107002324 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008737.1 MGP_C3HHeJ_G0007049.1 mouse_genomes_project 7 24477649 24484218 + lincRNA lincRNA MGP_C3HHeJ_T0083778.1 MGP_C3HHeJ_G0032021.1 mouse_genomes_project 7 57839332 58116382 + MGP_C3HHeJ_P0083778 Oca2 protein_coding protein_coding MGP_C3HHeJ_T0083779.1 MGP_C3HHeJ_G0032021.1 mouse_genomes_project 7 57839333 57855074 + MGP_C3HHeJ_P0083779 Oca2 protein_coding protein_coding MGP_C3HHeJ_T0083780.1 MGP_C3HHeJ_G0032021.1 mouse_genomes_project 7 57839349 58116129 + MGP_C3HHeJ_P0083780 Oca2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083781.1 MGP_C3HHeJ_G0032021.1 mouse_genomes_project 7 57839353 57879810 + MGP_C3HHeJ_P0083781 Oca2 protein_coding protein_coding MGP_C3HHeJ_T0083782.1 MGP_C3HHeJ_G0032021.1 mouse_genomes_project 7 57839380 58116377 + MGP_C3HHeJ_P0083782 Oca2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083783.1 MGP_C3HHeJ_G0032021.1 mouse_genomes_project 7 57905442 57922454 + Oca2 protein_coding processed_transcript MGP_C3HHeJ_T0086649.1 MGP_C3HHeJ_G0032785.1 mouse_genomes_project 7 133426851 133564400 + MGP_C3HHeJ_P0086649 Plpp4 protein_coding protein_coding MGP_C3HHeJ_T0086650.1 MGP_C3HHeJ_G0032785.1 mouse_genomes_project 7 133426858 133497668 + Plpp4 protein_coding retained_intron MGP_C3HHeJ_T0086651.1 MGP_C3HHeJ_G0032785.1 mouse_genomes_project 7 133426867 133480865 + Plpp4 protein_coding processed_transcript MGP_C3HHeJ_T0086652.1 MGP_C3HHeJ_G0032785.1 mouse_genomes_project 7 133426869 133564295 + MGP_C3HHeJ_P0086652 Plpp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086653.1 MGP_C3HHeJ_G0032785.1 mouse_genomes_project 7 133480844 133564407 + MGP_C3HHeJ_P0086653 Plpp4 protein_coding protein_coding MGP_C3HHeJ_T0084792.1 MGP_C3HHeJ_G0032263.1 mouse_genomes_project 7 103193175 103195191 + MGP_C3HHeJ_P0084792 Lipt2 protein_coding protein_coding MGP_C3HHeJ_T0086308.1 MGP_C3HHeJ_G0032717.1 mouse_genomes_project 7 131055754 131058274 - MGP_C3HHeJ_P0086308 Zg16 protein_coding protein_coding MGP_C3HHeJ_T0086309.1 MGP_C3HHeJ_G0032717.1 mouse_genomes_project 7 131055754 131057576 - MGP_C3HHeJ_P0086309 Zg16 protein_coding protein_coding MGP_C3HHeJ_T0086310.1 MGP_C3HHeJ_G0032717.1 mouse_genomes_project 7 131056074 131093221 - MGP_C3HHeJ_P0086310 Zg16 protein_coding protein_coding MGP_C3HHeJ_T0086311.1 MGP_C3HHeJ_G0032717.1 mouse_genomes_project 7 131069281 131093179 - Zg16 protein_coding processed_transcript MGP_C3HHeJ_T0015592.1 MGP_C3HHeJ_G0013696.1 mouse_genomes_project 7 43301053 43301308 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085981.1 MGP_C3HHeJ_G0032666.1 mouse_genomes_project 7 129476743 129504122 + MGP_C3HHeJ_P0085981 Il4ra protein_coding protein_coding MGP_C3HHeJ_T0085982.1 MGP_C3HHeJ_G0032666.1 mouse_genomes_project 7 129476894 129496928 + Il4ra protein_coding retained_intron MGP_C3HHeJ_T0085983.1 MGP_C3HHeJ_G0032666.1 mouse_genomes_project 7 129476894 129491835 + MGP_C3HHeJ_P0085983 Il4ra protein_coding protein_coding MGP_C3HHeJ_T0085984.1 MGP_C3HHeJ_G0032666.1 mouse_genomes_project 7 129476899 129494645 + MGP_C3HHeJ_P0085984 Il4ra protein_coding protein_coding MGP_C3HHeJ_T0085985.1 MGP_C3HHeJ_G0032666.1 mouse_genomes_project 7 129476910 129502615 + MGP_C3HHeJ_P0085985 Il4ra protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086861.1 MGP_C3HHeJ_G0032827.1 mouse_genomes_project 7 139312568 139370873 - MGP_C3HHeJ_P0086861 Fam196a protein_coding protein_coding MGP_C3HHeJ_T0081495.1 MGP_C3HHeJ_G0031437.1 mouse_genomes_project 7 16245610 16251496 + MGP_C3HHeJ_P0081495 Ceacam12 protein_coding protein_coding MGP_C3HHeJ_T0081496.1 MGP_C3HHeJ_G0031437.1 mouse_genomes_project 7 16245620 16257702 + MGP_C3HHeJ_P0081496 Ceacam12 protein_coding protein_coding MGP_C3HHeJ_T0081497.1 MGP_C3HHeJ_G0031437.1 mouse_genomes_project 7 16245672 16250110 + MGP_C3HHeJ_P0081497 Ceacam12 protein_coding protein_coding MGP_C3HHeJ_T0083464.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46700928 46721182 + MGP_C3HHeJ_P0083464 Bcat2 protein_coding protein_coding MGP_C3HHeJ_T0083465.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46701125 46718334 + Bcat2 protein_coding retained_intron MGP_C3HHeJ_T0083466.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46701148 46721182 + MGP_C3HHeJ_P0083466 Bcat2 protein_coding protein_coding MGP_C3HHeJ_T0083467.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46701771 46721182 + MGP_C3HHeJ_P0083467 Bcat2 protein_coding protein_coding MGP_C3HHeJ_T0083468.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46703677 46721182 + MGP_C3HHeJ_P0083468 Bcat2 protein_coding protein_coding MGP_C3HHeJ_T0083469.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46705911 46716589 + MGP_C3HHeJ_P0083469 Bcat2 protein_coding protein_coding MGP_C3HHeJ_T0083470.1 MGP_C3HHeJ_G0031937.1 mouse_genomes_project 7 46706033 46716708 + Bcat2 protein_coding retained_intron MGP_C3HHeJ_T0008864.1 MGP_C3HHeJ_G0007146.1 mouse_genomes_project 7 82729516 82731397 - 6330403N20Rik lincRNA lincRNA MGP_C3HHeJ_T0081723.1 MGP_C3HHeJ_G0031505.1 mouse_genomes_project 7 18348822 18363956 - MGP_C3HHeJ_P0081723 Igsf23 protein_coding protein_coding MGP_C3HHeJ_T0083127.1 MGP_C3HHeJ_G0031859.1 mouse_genomes_project 7 45026246 45028434 + MGP_C3HHeJ_P0083127 Klk1b11 protein_coding protein_coding MGP_C3HHeJ_T0085040.1 MGP_C3HHeJ_G0032312.1 mouse_genomes_project 7 105712823 105714310 - MGP_C3HHeJ_P0085040 Olfr545 protein_coding protein_coding MGP_C3HHeJ_T0018203.1 MGP_C3HHeJ_G0015458.1 mouse_genomes_project 7 138609388 138612621 - A130023I24Rik processed_transcript sense_intronic MGP_C3HHeJ_T0018204.1 MGP_C3HHeJ_G0015458.1 mouse_genomes_project 7 138609467 138611234 - A130023I24Rik processed_transcript retained_intron MGP_C3HHeJ_T0082568.1 MGP_C3HHeJ_G0031729.1 mouse_genomes_project 7 29945038 29948304 + Hspb6 protein_coding processed_transcript MGP_C3HHeJ_T0082569.1 MGP_C3HHeJ_G0031729.1 mouse_genomes_project 7 29945384 29948303 + Hspb6 protein_coding processed_transcript MGP_C3HHeJ_T0082570.1 MGP_C3HHeJ_G0031729.1 mouse_genomes_project 7 29946128 29948307 + MGP_C3HHeJ_P0082570 Hspb6 protein_coding protein_coding MGP_C3HHeJ_T0082571.1 MGP_C3HHeJ_G0031729.1 mouse_genomes_project 7 29946748 29947508 + Hspb6 protein_coding processed_transcript MGP_C3HHeJ_T0086491.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131892588 131921867 + Stx4a protein_coding processed_transcript MGP_C3HHeJ_T0086492.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131915283 131921867 + MGP_C3HHeJ_P0086492 Stx4a protein_coding protein_coding MGP_C3HHeJ_T0086493.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131915487 131921848 + MGP_C3HHeJ_P0086493 Stx4a protein_coding protein_coding MGP_C3HHeJ_T0086494.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131915489 131917464 + Stx4a protein_coding retained_intron MGP_C3HHeJ_T0086495.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131915497 131920138 + MGP_C3HHeJ_P0086495 Stx4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086496.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131916204 131920106 + Stx4a protein_coding retained_intron MGP_C3HHeJ_T0086497.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131917117 131921534 + Stx4a protein_coding retained_intron MGP_C3HHeJ_T0086498.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131919303 131921355 + Stx4a protein_coding retained_intron MGP_C3HHeJ_T0086499.1 MGP_C3HHeJ_G0032755.1 mouse_genomes_project 7 131921247 131921867 + Stx4a protein_coding retained_intron MGP_C3HHeJ_T0086557.1 MGP_C3HHeJ_G0032767.1 mouse_genomes_project 7 132092740 132099825 + MGP_C3HHeJ_P0086557 Trim72 protein_coding protein_coding MGP_C3HHeJ_T0086558.1 MGP_C3HHeJ_G0032767.1 mouse_genomes_project 7 132093169 132099468 + MGP_C3HHeJ_P0086558 Trim72 protein_coding protein_coding MGP_C3HHeJ_T0081602.1 MGP_C3HHeJ_G0031472.1 mouse_genomes_project 7 17653238 17669758 + MGP_C3HHeJ_P0081602 Rtn2 protein_coding protein_coding MGP_C3HHeJ_T0081603.1 MGP_C3HHeJ_G0031472.1 mouse_genomes_project 7 17663648 17669753 + MGP_C3HHeJ_P0081603 Rtn2 protein_coding protein_coding MGP_C3HHeJ_T0087020.1 MGP_C3HHeJ_G0032888.1 mouse_genomes_project 7 145433848 145448578 - MGP_C3HHeJ_P0087020 Zfp941 protein_coding protein_coding MGP_C3HHeJ_T0087021.1 MGP_C3HHeJ_G0032888.1 mouse_genomes_project 7 145436088 145448532 - MGP_C3HHeJ_P0087021 Zfp941 protein_coding protein_coding MGP_C3HHeJ_T0087022.1 MGP_C3HHeJ_G0032888.1 mouse_genomes_project 7 145444863 145448546 - Zfp941 protein_coding processed_transcript MGP_C3HHeJ_T0015651.1 MGP_C3HHeJ_G0013755.1 mouse_genomes_project 7 83378274 83378598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087005.1 MGP_C3HHeJ_G0032873.1 mouse_genomes_project 7 144977322 144978402 - MGP_C3HHeJ_P0087005 Olfr530 protein_coding protein_coding MGP_C3HHeJ_T0082378.1 MGP_C3HHeJ_G0031681.1 mouse_genomes_project 7 28508455 28520165 - MGP_C3HHeJ_P0082378 Kcnk6 protein_coding protein_coding MGP_C3HHeJ_T0082508.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692595 29698183 + MGP_C3HHeJ_P0082508 Alkbh6 protein_coding protein_coding MGP_C3HHeJ_T0082509.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692655 29698033 + MGP_C3HHeJ_P0082509 Alkbh6 protein_coding protein_coding MGP_C3HHeJ_T0082510.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692655 29698040 + MGP_C3HHeJ_P0082510 Alkbh6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082511.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692666 29698182 + Alkbh6 protein_coding retained_intron MGP_C3HHeJ_T0082512.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692673 29696387 + Alkbh6 protein_coding retained_intron MGP_C3HHeJ_T0082513.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692687 29696299 + Alkbh6 protein_coding retained_intron MGP_C3HHeJ_T0082514.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692691 29694929 + Alkbh6 protein_coding processed_transcript MGP_C3HHeJ_T0082515.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29692732 29696575 + Alkbh6 protein_coding retained_intron MGP_C3HHeJ_T0082516.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29693649 29696540 + Alkbh6 protein_coding retained_intron MGP_C3HHeJ_T0082517.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29695005 29696242 + Alkbh6 protein_coding retained_intron MGP_C3HHeJ_T0082518.1 MGP_C3HHeJ_G0031715.1 mouse_genomes_project 7 29696553 29698183 + Alkbh6 protein_coding processed_transcript MGP_C3HHeJ_T0085884.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125935245 125938575 - Ndufab1 protein_coding retained_intron MGP_C3HHeJ_T0085885.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125937605 125939880 - Ndufab1 protein_coding retained_intron MGP_C3HHeJ_T0085886.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125937620 125940570 - Ndufab1 protein_coding retained_intron MGP_C3HHeJ_T0085887.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125938313 125948525 - MGP_C3HHeJ_P0085887 Ndufab1 protein_coding protein_coding MGP_C3HHeJ_T0085888.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125938381 125948612 - MGP_C3HHeJ_P0085888 Ndufab1 protein_coding protein_coding MGP_C3HHeJ_T0085889.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125939912 125948496 - Ndufab1 protein_coding retained_intron MGP_C3HHeJ_T0085890.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125940819 125948135 - Ndufab1 protein_coding processed_transcript MGP_C3HHeJ_T0085891.1 MGP_C3HHeJ_G0032648.1 mouse_genomes_project 7 125943250 125948618 - Ndufab1 protein_coding retained_intron MGP_C3HHeJ_T0085360.1 MGP_C3HHeJ_G0032501.1 mouse_genomes_project 7 111331884 111332817 + MGP_C3HHeJ_P0085360 Olfr476 protein_coding protein_coding MGP_C3HHeJ_T0084866.1 MGP_C3HHeJ_G0032280.1 mouse_genomes_project 7 104095924 104113546 - MGP_C3HHeJ_P0084866 P2ry2 protein_coding protein_coding MGP_C3HHeJ_T0084867.1 MGP_C3HHeJ_G0032280.1 mouse_genomes_project 7 104096579 104113531 - MGP_C3HHeJ_P0084867 P2ry2 protein_coding protein_coding MGP_C3HHeJ_T0100848.1 MGP_C3HHeJ_G0039042.1 mouse_genomes_project 7 105972610 105972743 - Gm24210 snoRNA snoRNA MGP_C3HHeJ_T0015552.1 MGP_C3HHeJ_G0013656.1 mouse_genomes_project 7 26111458 26111816 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085757.1 MGP_C3HHeJ_G0032612.1 mouse_genomes_project 7 123326329 123358458 + MGP_C3HHeJ_P0085757 Acsm1 protein_coding protein_coding MGP_C3HHeJ_T0085758.1 MGP_C3HHeJ_G0032612.1 mouse_genomes_project 7 123338346 123385992 + MGP_C3HHeJ_P0085758 Acsm1 protein_coding protein_coding MGP_C3HHeJ_T0085759.1 MGP_C3HHeJ_G0032612.1 mouse_genomes_project 7 123338378 123385712 + MGP_C3HHeJ_P0085759 Acsm1 protein_coding protein_coding MGP_C3HHeJ_T0086611.1 MGP_C3HHeJ_G0032779.1 mouse_genomes_project 7 132493180 132539157 - MGP_C3HHeJ_P0086611 Rgs10 protein_coding protein_coding MGP_C3HHeJ_T0086612.1 MGP_C3HHeJ_G0032779.1 mouse_genomes_project 7 132493444 132513242 - Rgs10 protein_coding processed_transcript MGP_C3HHeJ_T0086613.1 MGP_C3HHeJ_G0032779.1 mouse_genomes_project 7 132493560 132495917 - Rgs10 protein_coding processed_transcript MGP_C3HHeJ_T0086614.1 MGP_C3HHeJ_G0032779.1 mouse_genomes_project 7 132508400 132523933 - Rgs10 protein_coding retained_intron MGP_C3HHeJ_T0086615.1 MGP_C3HHeJ_G0032779.1 mouse_genomes_project 7 132522364 132539147 - MGP_C3HHeJ_P0086615 Rgs10 protein_coding protein_coding MGP_C3HHeJ_T0086616.1 MGP_C3HHeJ_G0032779.1 mouse_genomes_project 7 132522635 132539742 - MGP_C3HHeJ_P0086616 Rgs10 protein_coding protein_coding MGP_C3HHeJ_T0087506.1 MGP_C3HHeJ_G0032986.1 mouse_genomes_project 7 149450589 149456203 - MGP_C3HHeJ_P0087506 Fadd protein_coding protein_coding MGP_C3HHeJ_T0087302.1 MGP_C3HHeJ_G0032952.1 mouse_genomes_project 7 147094816 147108969 - Ifitm10 protein_coding processed_transcript MGP_C3HHeJ_T0087303.1 MGP_C3HHeJ_G0032952.1 mouse_genomes_project 7 147095089 147148013 - MGP_C3HHeJ_P0087303 Ifitm10 protein_coding protein_coding MGP_C3HHeJ_T0087304.1 MGP_C3HHeJ_G0032952.1 mouse_genomes_project 7 147095109 147147841 - Ifitm10 protein_coding processed_transcript MGP_C3HHeJ_T0087305.1 MGP_C3HHeJ_G0032952.1 mouse_genomes_project 7 147130595 147147831 - MGP_C3HHeJ_P0087305 Ifitm10 protein_coding protein_coding MGP_C3HHeJ_T0087306.1 MGP_C3HHeJ_G0032952.1 mouse_genomes_project 7 147131009 147149325 - MGP_C3HHeJ_P0087306 Ifitm10 protein_coding protein_coding MGP_C3HHeJ_T0087307.1 MGP_C3HHeJ_G0032952.1 mouse_genomes_project 7 147146714 147148453 - Ifitm10 protein_coding processed_transcript MGP_C3HHeJ_T0085845.1 MGP_C3HHeJ_G0032635.1 mouse_genomes_project 7 124771198 124806047 + MGP_C3HHeJ_P0085845 Mfsd13b protein_coding protein_coding MGP_C3HHeJ_T0085846.1 MGP_C3HHeJ_G0032635.1 mouse_genomes_project 7 124771214 124780157 + MGP_C3HHeJ_P0085846 Mfsd13b protein_coding protein_coding MGP_C3HHeJ_T0085847.1 MGP_C3HHeJ_G0032635.1 mouse_genomes_project 7 124771217 124777767 + MGP_C3HHeJ_P0085847 Mfsd13b protein_coding protein_coding MGP_C3HHeJ_T0085848.1 MGP_C3HHeJ_G0032635.1 mouse_genomes_project 7 124780511 124806047 + MGP_C3HHeJ_P0085848 Mfsd13b protein_coding protein_coding MGP_C3HHeJ_T0086489.1 MGP_C3HHeJ_G0032754.1 mouse_genomes_project 7 131872643 131892844 - MGP_C3HHeJ_P0086489 Stx1b protein_coding protein_coding MGP_C3HHeJ_T0086490.1 MGP_C3HHeJ_G0032754.1 mouse_genomes_project 7 131876121 131879667 - MGP_C3HHeJ_P0086490 Stx1b protein_coding protein_coding MGP_C3HHeJ_T0008827.1 MGP_C3HHeJ_G0007121.1 mouse_genomes_project 7 75260694 75265013 - Gm6567 lincRNA lincRNA MGP_C3HHeJ_T0005159.1 MGP_C3HHeJ_G0004380.1 mouse_genomes_project 7 81372525 81411440 - Gm26633 antisense antisense MGP_C3HHeJ_T0102186.1 MGP_C3HHeJ_G0040150.1 mouse_genomes_project 7 12528816 12529110 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081844.1 MGP_C3HHeJ_G0031550.1 mouse_genomes_project 7 23650454 23659541 + MGP_C3HHeJ_P0081844 Dmrtc2 protein_coding protein_coding MGP_C3HHeJ_T0083037.1 MGP_C3HHeJ_G0031824.1 mouse_genomes_project 7 44339374 44347506 + Siglecf protein_coding retained_intron MGP_C3HHeJ_T0083038.1 MGP_C3HHeJ_G0031824.1 mouse_genomes_project 7 44339374 44347508 + MGP_C3HHeJ_P0083038 Siglecf protein_coding protein_coding MGP_C3HHeJ_T0083039.1 MGP_C3HHeJ_G0031824.1 mouse_genomes_project 7 44339416 44339877 + Siglecf protein_coding processed_transcript MGP_C3HHeJ_T0083040.1 MGP_C3HHeJ_G0031824.1 mouse_genomes_project 7 44339441 44347569 + MGP_C3HHeJ_P0083040 Siglecf protein_coding protein_coding MGP_C3HHeJ_T0083041.1 MGP_C3HHeJ_G0031824.1 mouse_genomes_project 7 44339555 44347327 + MGP_C3HHeJ_P0083041 Siglecf protein_coding protein_coding MGP_C3HHeJ_T0083042.1 MGP_C3HHeJ_G0031824.1 mouse_genomes_project 7 44339581 44344656 + MGP_C3HHeJ_P0083042 Siglecf protein_coding protein_coding MGP_C3HHeJ_T0100857.1 MGP_C3HHeJ_G0039051.1 mouse_genomes_project 7 118423159 118423291 - Gm24982 snoRNA snoRNA MGP_C3HHeJ_T0005092.1 MGP_C3HHeJ_G0004330.1 mouse_genomes_project 7 22688949 22760917 - antisense antisense MGP_C3HHeJ_T0015563.1 MGP_C3HHeJ_G0013667.1 mouse_genomes_project 7 33554463 33554925 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010763.1 MGP_C3HHeJ_G0008896.1 mouse_genomes_project 7 27761857 27761917 - Mir7049 miRNA miRNA MGP_C3HHeJ_T0002232.1 MGP_C3HHeJ_G0002152.1 mouse_genomes_project 7 81126096 81127173 - TEC TEC MGP_C3HHeJ_T0083223.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602163 45606234 - MGP_C3HHeJ_P0083223 Nr1h2 protein_coding protein_coding MGP_C3HHeJ_T0083224.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602163 45606497 - MGP_C3HHeJ_P0083224 Nr1h2 protein_coding protein_coding MGP_C3HHeJ_T0083225.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602164 45606496 - MGP_C3HHeJ_P0083225 Nr1h2 protein_coding protein_coding MGP_C3HHeJ_T0083226.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602182 45606471 - MGP_C3HHeJ_P0083226 Nr1h2 protein_coding protein_coding MGP_C3HHeJ_T0083227.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602199 45606471 - MGP_C3HHeJ_P0083227 Nr1h2 protein_coding protein_coding MGP_C3HHeJ_T0083228.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602849 45606459 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083229.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45602921 45604171 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083230.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45603604 45606499 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083231.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45603687 45604419 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083232.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45604756 45605135 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083233.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45605041 45606471 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083234.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45605140 45605760 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0083235.1 MGP_C3HHeJ_G0031876.1 mouse_genomes_project 7 45605181 45606447 - Nr1h2 protein_coding retained_intron MGP_C3HHeJ_T0087004.1 MGP_C3HHeJ_G0032872.1 mouse_genomes_project 7 144946545 144947481 - MGP_C3HHeJ_P0087004 Olfr60 protein_coding protein_coding MGP_C3HHeJ_T0086348.1 MGP_C3HHeJ_G0032725.1 mouse_genomes_project 7 131252451 131257570 + MGP_C3HHeJ_P0086348 Zfp553 protein_coding protein_coding MGP_C3HHeJ_T0086349.1 MGP_C3HHeJ_G0032725.1 mouse_genomes_project 7 131252645 131257434 + MGP_C3HHeJ_P0086349 Zfp553 protein_coding protein_coding MGP_C3HHeJ_T0086350.1 MGP_C3HHeJ_G0032725.1 mouse_genomes_project 7 131252684 131253511 + Zfp553 protein_coding retained_intron MGP_C3HHeJ_T0083001.1 MGP_C3HHeJ_G0031811.1 mouse_genomes_project 7 42074229 42080938 - MGP_C3HHeJ_P0083001 protein_coding protein_coding MGP_C3HHeJ_T0081371.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14114855 14118587 + MGP_C3HHeJ_P0081371 Meis3 protein_coding protein_coding MGP_C3HHeJ_T0081372.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14114904 14118585 + MGP_C3HHeJ_P0081372 Meis3 protein_coding protein_coding MGP_C3HHeJ_T0081373.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14115040 14126731 + MGP_C3HHeJ_P0081373 Meis3 protein_coding protein_coding MGP_C3HHeJ_T0081374.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14115153 14126728 + Meis3 protein_coding retained_intron MGP_C3HHeJ_T0081375.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14115195 14126731 + MGP_C3HHeJ_P0081375 Meis3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081376.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14115195 14126731 + MGP_C3HHeJ_P0081376 Meis3 protein_coding protein_coding MGP_C3HHeJ_T0081377.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14117492 14118228 + Meis3 protein_coding retained_intron MGP_C3HHeJ_T0081378.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14118834 14125742 + MGP_C3HHeJ_P0081378 Meis3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081379.1 MGP_C3HHeJ_G0031402.1 mouse_genomes_project 7 14123551 14126731 + Meis3 protein_coding retained_intron MGP_C3HHeJ_T0015580.1 MGP_C3HHeJ_G0013684.1 mouse_genomes_project 7 40135638 40136102 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083049.1 MGP_C3HHeJ_G0031828.1 mouse_genomes_project 7 44426331 44432240 + MGP_C3HHeJ_P0083049 Lim2 protein_coding protein_coding MGP_C3HHeJ_T0018205.1 MGP_C3HHeJ_G0015459.1 mouse_genomes_project 7 144539625 144552362 + Gm16201 processed_transcript processed_transcript MGP_C3HHeJ_T0018206.1 MGP_C3HHeJ_G0015459.1 mouse_genomes_project 7 144539669 144569356 + Gm16201 processed_transcript processed_transcript MGP_C3HHeJ_T0081913.1 MGP_C3HHeJ_G0031563.1 mouse_genomes_project 7 24059555 24067630 - MGP_C3HHeJ_P0081913 Erf protein_coding protein_coding MGP_C3HHeJ_T0081914.1 MGP_C3HHeJ_G0031563.1 mouse_genomes_project 7 24062318 24067599 - MGP_C3HHeJ_P0081914 Erf protein_coding protein_coding MGP_C3HHeJ_T0018112.1 MGP_C3HHeJ_G0015420.1 mouse_genomes_project 7 26773617 26776803 - Gm44684 processed_transcript processed_transcript MGP_C3HHeJ_T0085353.1 MGP_C3HHeJ_G0032495.1 mouse_genomes_project 7 111076321 111085899 - MGP_C3HHeJ_P0085353 Cyb5r2 protein_coding protein_coding MGP_C3HHeJ_T0085354.1 MGP_C3HHeJ_G0032495.1 mouse_genomes_project 7 111078090 111085129 - MGP_C3HHeJ_P0085354 Cyb5r2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082462.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29468323 29477729 + Zfp260 protein_coding processed_transcript MGP_C3HHeJ_T0082463.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29468340 29481060 + MGP_C3HHeJ_P0082463 Zfp260 protein_coding protein_coding MGP_C3HHeJ_T0082464.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29468708 29473564 + Zfp260 protein_coding retained_intron MGP_C3HHeJ_T0082465.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29468715 29478197 + MGP_C3HHeJ_P0082465 Zfp260 protein_coding protein_coding MGP_C3HHeJ_T0082466.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29468724 29481057 + Zfp260 protein_coding processed_transcript MGP_C3HHeJ_T0082467.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29468731 29481052 + MGP_C3HHeJ_P0082467 Zfp260 protein_coding protein_coding MGP_C3HHeJ_T0082468.1 MGP_C3HHeJ_G0031703.1 mouse_genomes_project 7 29471609 29473547 + Zfp260 protein_coding retained_intron MGP_C3HHeJ_T0084387.1 MGP_C3HHeJ_G0032139.1 mouse_genomes_project 7 84280269 84286136 + MGP_C3HHeJ_P0084387 protein_coding protein_coding MGP_C3HHeJ_T0015560.1 MGP_C3HHeJ_G0013664.1 mouse_genomes_project 7 33214427 33215428 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102203.1 MGP_C3HHeJ_G0040166.1 mouse_genomes_project 7 24908961 24944949 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098171.1 MGP_C3HHeJ_G0036383.1 mouse_genomes_project 7 3586272 3586380 + n-R5s150 rRNA rRNA MGP_C3HHeJ_T0015649.1 MGP_C3HHeJ_G0013753.1 mouse_genomes_project 7 82865431 82866962 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010767.1 MGP_C3HHeJ_G0008900.1 mouse_genomes_project 7 29263549 29263608 + Mir7668 miRNA miRNA MGP_C3HHeJ_T0085528.1 MGP_C3HHeJ_G0032566.1 mouse_genomes_project 7 115738623 115875614 + MGP_C3HHeJ_P0085528 Mical2 protein_coding protein_coding MGP_C3HHeJ_T0085529.1 MGP_C3HHeJ_G0032566.1 mouse_genomes_project 7 115738657 115866947 + MGP_C3HHeJ_P0085529 Mical2 protein_coding protein_coding MGP_C3HHeJ_T0085530.1 MGP_C3HHeJ_G0032566.1 mouse_genomes_project 7 115738657 115830616 + MGP_C3HHeJ_P0085530 Mical2 protein_coding protein_coding MGP_C3HHeJ_T0085531.1 MGP_C3HHeJ_G0032566.1 mouse_genomes_project 7 115783898 115874395 + MGP_C3HHeJ_P0085531 Mical2 protein_coding protein_coding MGP_C3HHeJ_T0085532.1 MGP_C3HHeJ_G0032566.1 mouse_genomes_project 7 115831229 115866073 + Mical2 protein_coding retained_intron MGP_C3HHeJ_T0085533.1 MGP_C3HHeJ_G0032566.1 mouse_genomes_project 7 115865310 115875614 + MGP_C3HHeJ_P0085533 Mical2 protein_coding protein_coding MGP_C3HHeJ_T0005148.1 MGP_C3HHeJ_G0004371.1 mouse_genomes_project 7 57841750 57842715 - Gm44506 antisense antisense MGP_C3HHeJ_T0081882.1 MGP_C3HHeJ_G0031556.1 mouse_genomes_project 7 23773116 23801432 - MGP_C3HHeJ_P0081882 Atp1a3 protein_coding protein_coding MGP_C3HHeJ_T0081883.1 MGP_C3HHeJ_G0031556.1 mouse_genomes_project 7 23773116 23801495 - MGP_C3HHeJ_P0081883 Atp1a3 protein_coding protein_coding MGP_C3HHeJ_T0081884.1 MGP_C3HHeJ_G0031556.1 mouse_genomes_project 7 23773119 23801480 - MGP_C3HHeJ_P0081884 Atp1a3 protein_coding protein_coding MGP_C3HHeJ_T0081885.1 MGP_C3HHeJ_G0031556.1 mouse_genomes_project 7 23788037 23801444 - Atp1a3 protein_coding retained_intron MGP_C3HHeJ_T0081886.1 MGP_C3HHeJ_G0031556.1 mouse_genomes_project 7 23796068 23801494 - Atp1a3 protein_coding retained_intron MGP_C3HHeJ_T0098178.1 MGP_C3HHeJ_G0036390.1 mouse_genomes_project 7 85293839 85293947 - n-R5s154 rRNA rRNA MGP_C3HHeJ_T0005106.1 MGP_C3HHeJ_G0004341.1 mouse_genomes_project 7 28408475 28411032 - Gm16282 antisense antisense MGP_C3HHeJ_T0084421.1 MGP_C3HHeJ_G0032148.1 mouse_genomes_project 7 85171413 85186984 - MGP_C3HHeJ_P0084421 Saxo2 protein_coding protein_coding MGP_C3HHeJ_T0084422.1 MGP_C3HHeJ_G0032148.1 mouse_genomes_project 7 85172917 85186890 - MGP_C3HHeJ_P0084422 Saxo2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084423.1 MGP_C3HHeJ_G0032148.1 mouse_genomes_project 7 85173741 85186984 - Saxo2 protein_coding processed_transcript MGP_C3HHeJ_T0084424.1 MGP_C3HHeJ_G0032148.1 mouse_genomes_project 7 85180606 85186989 - Saxo2 protein_coding retained_intron MGP_C3HHeJ_T0084425.1 MGP_C3HHeJ_G0032148.1 mouse_genomes_project 7 85184636 85186989 - Saxo2 protein_coding processed_transcript MGP_C3HHeJ_T0099579.1 MGP_C3HHeJ_G0037773.1 mouse_genomes_project 7 57298827 57298889 + Gm26482 snRNA snRNA MGP_C3HHeJ_T0086378.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131524900 131531288 + MGP_C3HHeJ_P0086378 Prr14 protein_coding protein_coding MGP_C3HHeJ_T0086379.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131525547 131528383 + MGP_C3HHeJ_P0086379 Prr14 protein_coding protein_coding MGP_C3HHeJ_T0086380.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131525557 131528246 + MGP_C3HHeJ_P0086380 Prr14 protein_coding protein_coding MGP_C3HHeJ_T0086381.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131525580 131528354 + Prr14 protein_coding retained_intron MGP_C3HHeJ_T0086382.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131525977 131527633 + Prr14 protein_coding retained_intron MGP_C3HHeJ_T0086383.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131526018 131531287 + MGP_C3HHeJ_P0086383 Prr14 protein_coding protein_coding MGP_C3HHeJ_T0086384.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131526429 131529741 + Prr14 protein_coding retained_intron MGP_C3HHeJ_T0086385.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131528151 131529799 + MGP_C3HHeJ_P0086385 Prr14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086386.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131530029 131531286 + Prr14 protein_coding retained_intron MGP_C3HHeJ_T0086387.1 MGP_C3HHeJ_G0032737.1 mouse_genomes_project 7 131530047 131531284 + MGP_C3HHeJ_P0086387 Prr14 protein_coding protein_coding MGP_C3HHeJ_T0010796.1 MGP_C3HHeJ_G0008929.1 mouse_genomes_project 7 63458817 63458877 - Mir344h-1 miRNA miRNA MGP_C3HHeJ_T0085377.1 MGP_C3HHeJ_G0032518.1 mouse_genomes_project 7 111814275 111815220 + MGP_C3HHeJ_P0085377 Olfr497 protein_coding protein_coding MGP_C3HHeJ_T0086080.1 MGP_C3HHeJ_G0032682.1 mouse_genomes_project 7 130460969 130472737 - MGP_C3HHeJ_P0086080 Atxn2l protein_coding protein_coding MGP_C3HHeJ_T0086081.1 MGP_C3HHeJ_G0032682.1 mouse_genomes_project 7 130460976 130471714 - MGP_C3HHeJ_P0086081 Atxn2l protein_coding protein_coding MGP_C3HHeJ_T0086082.1 MGP_C3HHeJ_G0032682.1 mouse_genomes_project 7 130461047 130472655 - MGP_C3HHeJ_P0086082 Atxn2l protein_coding protein_coding MGP_C3HHeJ_T0086083.1 MGP_C3HHeJ_G0032682.1 mouse_genomes_project 7 130461414 130462638 - MGP_C3HHeJ_P0086083 Atxn2l protein_coding protein_coding MGP_C3HHeJ_T0086084.1 MGP_C3HHeJ_G0032682.1 mouse_genomes_project 7 130462224 130471618 - MGP_C3HHeJ_P0086084 Atxn2l protein_coding protein_coding MGP_C3HHeJ_T0086085.1 MGP_C3HHeJ_G0032682.1 mouse_genomes_project 7 130468449 130471400 - MGP_C3HHeJ_P0086085 Atxn2l protein_coding protein_coding MGP_C3HHeJ_T0008805.1 MGP_C3HHeJ_G0007104.1 mouse_genomes_project 7 67990821 67991393 - Gm45081 lincRNA lincRNA MGP_C3HHeJ_T0080808.1 MGP_C3HHeJ_G0031218.1 mouse_genomes_project 7 190207 200427 + MGP_C3HHeJ_P0080808 Myadm protein_coding protein_coding MGP_C3HHeJ_T0080810.1 MGP_C3HHeJ_G0031218.1 mouse_genomes_project 7 191662 201491 + MGP_C3HHeJ_P0080810 Myadm protein_coding protein_coding MGP_C3HHeJ_T0080811.1 MGP_C3HHeJ_G0031218.1 mouse_genomes_project 7 191703 202584 + MGP_C3HHeJ_P0080811 Myadm protein_coding protein_coding MGP_C3HHeJ_T0080812.1 MGP_C3HHeJ_G0031218.1 mouse_genomes_project 7 192618 199111 + MGP_C3HHeJ_P0080812 Myadm protein_coding protein_coding MGP_C3HHeJ_T0080813.1 MGP_C3HHeJ_G0031218.1 mouse_genomes_project 7 195242 201464 + MGP_C3HHeJ_P0080813 Myadm protein_coding protein_coding MGP_C3HHeJ_T0084621.1 MGP_C3HHeJ_G0032221.1 mouse_genomes_project 7 100215501 100237279 + MGP_C3HHeJ_P0084621 Kctd21 protein_coding protein_coding MGP_C3HHeJ_T0082793.1 MGP_C3HHeJ_G0031767.1 mouse_genomes_project 7 30811415 30814310 - MGP_C3HHeJ_P0082793 Scgb2b3 protein_coding protein_coding MGP_C3HHeJ_T0087257.1 MGP_C3HHeJ_G0032935.1 mouse_genomes_project 7 146255406 146329189 + MGP_C3HHeJ_P0087257 Ap2a2 protein_coding protein_coding MGP_C3HHeJ_T0087258.1 MGP_C3HHeJ_G0032935.1 mouse_genomes_project 7 146255441 146299382 + Ap2a2 protein_coding retained_intron MGP_C3HHeJ_T0087259.1 MGP_C3HHeJ_G0032935.1 mouse_genomes_project 7 146255763 146295082 + MGP_C3HHeJ_P0087259 Ap2a2 protein_coding protein_coding MGP_C3HHeJ_T0102167.1 MGP_C3HHeJ_G0040131.1 mouse_genomes_project 7 9941836 9942527 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082653.1 MGP_C3HHeJ_G0031746.1 mouse_genomes_project 7 30132368 30161093 + protein_coding processed_transcript MGP_C3HHeJ_T0082654.1 MGP_C3HHeJ_G0031746.1 mouse_genomes_project 7 30156294 30161101 + MGP_C3HHeJ_P0082654 protein_coding protein_coding MGP_C3HHeJ_T0082655.1 MGP_C3HHeJ_G0031746.1 mouse_genomes_project 7 30156298 30161101 + MGP_C3HHeJ_P0082655 protein_coding protein_coding MGP_C3HHeJ_T0082656.1 MGP_C3HHeJ_G0031746.1 mouse_genomes_project 7 30156382 30161101 + MGP_C3HHeJ_P0082656 protein_coding protein_coding MGP_C3HHeJ_T0082657.1 MGP_C3HHeJ_G0031746.1 mouse_genomes_project 7 30157594 30161093 + MGP_C3HHeJ_P0082657 protein_coding protein_coding MGP_C3HHeJ_T0081645.1 MGP_C3HHeJ_G0031483.1 mouse_genomes_project 7 17890010 17892524 - MGP_C3HHeJ_P0081645 Bloc1s3 protein_coding protein_coding MGP_C3HHeJ_T0002158.1 MGP_C3HHeJ_G0002079.1 mouse_genomes_project 7 14895749 14897436 - TEC TEC MGP_C3HHeJ_T0082082.1 MGP_C3HHeJ_G0031608.1 mouse_genomes_project 7 26257216 26274109 + MGP_C3HHeJ_P0082082 protein_coding protein_coding MGP_C3HHeJ_T0082083.1 MGP_C3HHeJ_G0031608.1 mouse_genomes_project 7 26257216 26268385 + MGP_C3HHeJ_P0082083 protein_coding protein_coding MGP_C3HHeJ_T0082084.1 MGP_C3HHeJ_G0031608.1 mouse_genomes_project 7 26266696 26268385 + MGP_C3HHeJ_P0082084 protein_coding protein_coding MGP_C3HHeJ_T0081534.1 MGP_C3HHeJ_G0031455.1 mouse_genomes_project 7 17352070 17354806 + MGP_C3HHeJ_P0081534 Irf2bp1 protein_coding protein_coding MGP_C3HHeJ_T0083714.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53415216 53555101 + MGP_C3HHeJ_P0083714 Gas2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083715.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53415590 53553635 + MGP_C3HHeJ_P0083715 Gas2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083716.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53415628 53526118 + MGP_C3HHeJ_P0083716 Gas2 protein_coding protein_coding MGP_C3HHeJ_T0083717.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53417105 53417599 + Gas2 protein_coding retained_intron MGP_C3HHeJ_T0083718.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53440156 53503421 + MGP_C3HHeJ_P0083718 Gas2 protein_coding protein_coding MGP_C3HHeJ_T0083719.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53485885 53503459 + Gas2 protein_coding processed_transcript MGP_C3HHeJ_T0083720.1 MGP_C3HHeJ_G0032011.1 mouse_genomes_project 7 53503375 53516568 + Gas2 protein_coding processed_transcript MGP_C3HHeJ_T0083024.1 MGP_C3HHeJ_G0031821.1 mouse_genomes_project 7 43060825 43101142 + MGP_C3HHeJ_P0083024 Vmn2r61 protein_coding protein_coding MGP_C3HHeJ_T0083025.1 MGP_C3HHeJ_G0031821.1 mouse_genomes_project 7 43066801 43076559 + Vmn2r61 protein_coding processed_transcript MGP_C3HHeJ_T0011605.1 MGP_C3HHeJ_G0009738.1 mouse_genomes_project 7 147361439 147361509 + Gm27786 misc_RNA misc_RNA MGP_C3HHeJ_T0086769.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137031315 137099120 - MGP_C3HHeJ_P0086769 Fam53b protein_coding protein_coding MGP_C3HHeJ_T0086770.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137078430 137134400 - MGP_C3HHeJ_P0086770 Fam53b protein_coding protein_coding MGP_C3HHeJ_T0086771.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137078430 137106837 - MGP_C3HHeJ_P0086771 Fam53b protein_coding protein_coding MGP_C3HHeJ_T0086772.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137079265 137135034 - MGP_C3HHeJ_P0086772 Fam53b protein_coding protein_coding MGP_C3HHeJ_T0086773.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137099042 137127851 - MGP_C3HHeJ_P0086773 Fam53b protein_coding protein_coding MGP_C3HHeJ_T0086774.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137099153 137100230 - Fam53b protein_coding processed_transcript MGP_C3HHeJ_T0086775.1 MGP_C3HHeJ_G0032812.1 mouse_genomes_project 7 137099212 137123221 - Fam53b protein_coding processed_transcript MGP_C3HHeJ_T0010786.1 MGP_C3HHeJ_G0008919.1 mouse_genomes_project 7 59195192 59195294 + Mir6389 miRNA miRNA MGP_C3HHeJ_T0101475.1 MGP_C3HHeJ_G0039477.1 mouse_genomes_project 7 33627206 33648928 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101476.1 MGP_C3HHeJ_G0039477.1 mouse_genomes_project 7 33627372 33628641 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0002212.1 MGP_C3HHeJ_G0002133.1 mouse_genomes_project 7 75581796 75583729 + TEC TEC MGP_C3HHeJ_T0015622.1 MGP_C3HHeJ_G0013726.1 mouse_genomes_project 7 58473086 58473689 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081551.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17442073 17452121 + MGP_C3HHeJ_P0081551 Dmpk protein_coding protein_coding MGP_C3HHeJ_T0081552.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17442092 17445199 + MGP_C3HHeJ_P0081552 Dmpk protein_coding protein_coding MGP_C3HHeJ_T0081553.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17442094 17452121 + MGP_C3HHeJ_P0081553 Dmpk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081554.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17442109 17452121 + MGP_C3HHeJ_P0081554 Dmpk protein_coding protein_coding MGP_C3HHeJ_T0081555.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17442165 17452121 + MGP_C3HHeJ_P0081555 Dmpk protein_coding protein_coding MGP_C3HHeJ_T0081556.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17442934 17445934 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081557.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17444724 17452119 + Dmpk protein_coding retained_intron MGP_C3HHeJ_T0081558.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17444724 17452119 + Dmpk protein_coding retained_intron MGP_C3HHeJ_T0081559.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17444724 17452119 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081560.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17445501 17447365 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081561.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17445725 17446864 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081562.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17445843 17450029 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081563.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17445978 17447591 + Dmpk protein_coding retained_intron MGP_C3HHeJ_T0081564.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17446417 17451306 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081565.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17449745 17450623 + Dmpk protein_coding retained_intron MGP_C3HHeJ_T0081566.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17449878 17450797 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081567.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17450479 17452071 + Dmpk protein_coding processed_transcript MGP_C3HHeJ_T0081568.1 MGP_C3HHeJ_G0031460.1 mouse_genomes_project 7 17450557 17451504 + Dmpk protein_coding retained_intron MGP_C3HHeJ_T0085747.1 MGP_C3HHeJ_G0032610.1 mouse_genomes_project 7 123238899 123256191 + MGP_C3HHeJ_P0085747 Acsm5 protein_coding protein_coding MGP_C3HHeJ_T0082777.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30581553 30602441 - Gramd1a protein_coding retained_intron MGP_C3HHeJ_T0082778.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30581553 30602441 - MGP_C3HHeJ_P0082778 Gramd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082779.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30581553 30602462 - MGP_C3HHeJ_P0082779 Gramd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082780.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30581553 30602511 - MGP_C3HHeJ_P0082780 Gramd1a protein_coding protein_coding MGP_C3HHeJ_T0082781.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30581553 30602443 - MGP_C3HHeJ_P0082781 Gramd1a protein_coding protein_coding MGP_C3HHeJ_T0082782.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30583735 30584741 - Gramd1a protein_coding retained_intron MGP_C3HHeJ_T0082783.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30583967 30589558 - MGP_C3HHeJ_P0082783 Gramd1a protein_coding protein_coding MGP_C3HHeJ_T0082784.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30584215 30595139 - MGP_C3HHeJ_P0082784 Gramd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082785.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30586967 30591298 - MGP_C3HHeJ_P0082785 Gramd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082786.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30591247 30602441 - MGP_C3HHeJ_P0082786 Gramd1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082787.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30592454 30602382 - Gramd1a protein_coding retained_intron MGP_C3HHeJ_T0082788.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30592562 30603498 - MGP_C3HHeJ_P0082788 Gramd1a protein_coding protein_coding MGP_C3HHeJ_T0082789.1 MGP_C3HHeJ_G0031764.1 mouse_genomes_project 7 30593983 30607320 - MGP_C3HHeJ_P0082789 Gramd1a protein_coding protein_coding MGP_C3HHeJ_T0008860.1 MGP_C3HHeJ_G0007143.1 mouse_genomes_project 7 81956982 81958321 - Gm45168 lincRNA lincRNA MGP_C3HHeJ_T0008861.1 MGP_C3HHeJ_G0007143.1 mouse_genomes_project 7 81957123 81958332 - Gm45168 lincRNA lincRNA MGP_C3HHeJ_T0082958.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37735560 37744150 - MGP_C3HHeJ_P0082958 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082959.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37743273 38046227 - MGP_C3HHeJ_P0082959 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082960.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37743278 38046568 - MGP_C3HHeJ_P0082960 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082961.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37743291 38047586 - MGP_C3HHeJ_P0082961 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082962.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37743346 38049458 - MGP_C3HHeJ_P0082962 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082963.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37835332 38047388 - MGP_C3HHeJ_P0082963 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082964.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37835462 38050226 - MGP_C3HHeJ_P0082964 Zfp536 protein_coding protein_coding MGP_C3HHeJ_T0082965.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37983437 38050162 - Zfp536 protein_coding processed_transcript MGP_C3HHeJ_T0082966.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 37989687 38050147 - Zfp536 protein_coding retained_intron MGP_C3HHeJ_T0082967.1 MGP_C3HHeJ_G0031802.1 mouse_genomes_project 7 38048964 38050168 - Zfp536 protein_coding retained_intron MGP_C3HHeJ_T0082731.1 MGP_C3HHeJ_G0031758.1 mouse_genomes_project 7 30490827 30499727 - MGP_C3HHeJ_P0082731 Fxyd7 protein_coding protein_coding MGP_C3HHeJ_T0082732.1 MGP_C3HHeJ_G0031758.1 mouse_genomes_project 7 30490827 30499791 - MGP_C3HHeJ_P0082732 Fxyd7 protein_coding protein_coding MGP_C3HHeJ_T0085742.1 MGP_C3HHeJ_G0032605.1 mouse_genomes_project 7 122680890 122704081 - MGP_C3HHeJ_P0085742 Gprc5b protein_coding protein_coding MGP_C3HHeJ_T0098176.1 MGP_C3HHeJ_G0036388.1 mouse_genomes_project 7 68299099 68299189 - Gm23957 rRNA rRNA MGP_C3HHeJ_T0083704.1 MGP_C3HHeJ_G0032006.1 mouse_genomes_project 7 51461491 52049000 + MGP_C3HHeJ_P0083704 Nell1 protein_coding protein_coding MGP_C3HHeJ_T0083705.1 MGP_C3HHeJ_G0032006.1 mouse_genomes_project 7 51461491 52374961 + MGP_C3HHeJ_P0083705 Nell1 protein_coding protein_coding MGP_C3HHeJ_T0083706.1 MGP_C3HHeJ_G0032006.1 mouse_genomes_project 7 51461696 51761352 + Nell1 protein_coding retained_intron MGP_C3HHeJ_T0083707.1 MGP_C3HHeJ_G0032006.1 mouse_genomes_project 7 51461961 52373064 + MGP_C3HHeJ_P0083707 Nell1 protein_coding protein_coding MGP_C3HHeJ_T0083708.1 MGP_C3HHeJ_G0032006.1 mouse_genomes_project 7 51585080 51712606 + Nell1 protein_coding processed_transcript MGP_C3HHeJ_T0082071.1 MGP_C3HHeJ_G0031606.1 mouse_genomes_project 7 26238991 26240399 - MGP_C3HHeJ_P0082071 Mia protein_coding protein_coding MGP_C3HHeJ_T0082072.1 MGP_C3HHeJ_G0031606.1 mouse_genomes_project 7 26238993 26240377 - Mia protein_coding retained_intron MGP_C3HHeJ_T0082073.1 MGP_C3HHeJ_G0031606.1 mouse_genomes_project 7 26238993 26240407 - MGP_C3HHeJ_P0082073 Mia protein_coding protein_coding MGP_C3HHeJ_T0082074.1 MGP_C3HHeJ_G0031606.1 mouse_genomes_project 7 26239738 26240246 - Mia protein_coding processed_transcript MGP_C3HHeJ_T0081159.1 MGP_C3HHeJ_G0031310.1 mouse_genomes_project 7 3543960 3544993 + MGP_C3HHeJ_P0081159 Olfr1346 protein_coding protein_coding MGP_C3HHeJ_T0083414.1 MGP_C3HHeJ_G0031927.1 mouse_genomes_project 7 46529632 46530674 + MGP_C3HHeJ_P0083414 Lhb protein_coding protein_coding MGP_C3HHeJ_T0084640.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446416 100472287 - MGP_C3HHeJ_P0084640 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084641.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446419 100476102 - MGP_C3HHeJ_P0084641 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084642.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446424 100476103 - MGP_C3HHeJ_P0084642 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084643.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446425 100476021 - MGP_C3HHeJ_P0084643 Aamdc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084644.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446432 100476109 - Aamdc protein_coding processed_transcript MGP_C3HHeJ_T0084645.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446437 100476120 - MGP_C3HHeJ_P0084645 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084646.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446627 100476064 - MGP_C3HHeJ_P0084646 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084647.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446633 100476065 - MGP_C3HHeJ_P0084647 Aamdc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084648.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446650 100476097 - MGP_C3HHeJ_P0084648 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084649.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446755 100476042 - MGP_C3HHeJ_P0084649 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084650.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100446800 100476005 - MGP_C3HHeJ_P0084650 Aamdc protein_coding protein_coding MGP_C3HHeJ_T0084651.1 MGP_C3HHeJ_G0032227.1 mouse_genomes_project 7 100472533 100474852 - Aamdc protein_coding retained_intron MGP_C3HHeJ_T0083736.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57397719 57435477 + MGP_C3HHeJ_P0083736 Tubgcp5 protein_coding protein_coding MGP_C3HHeJ_T0083737.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57397730 57430894 + Tubgcp5 protein_coding retained_intron MGP_C3HHeJ_T0083738.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57397733 57435246 + MGP_C3HHeJ_P0083738 Tubgcp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083739.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57397757 57435246 + MGP_C3HHeJ_P0083739 Tubgcp5 protein_coding protein_coding MGP_C3HHeJ_T0083740.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57397791 57402479 + MGP_C3HHeJ_P0083740 Tubgcp5 protein_coding protein_coding MGP_C3HHeJ_T0083741.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57408191 57412516 + Tubgcp5 protein_coding retained_intron MGP_C3HHeJ_T0083742.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57409844 57421549 + Tubgcp5 protein_coding retained_intron MGP_C3HHeJ_T0083743.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57421096 57422821 + Tubgcp5 protein_coding retained_intron MGP_C3HHeJ_T0083744.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57425439 57434735 + Tubgcp5 protein_coding retained_intron MGP_C3HHeJ_T0083745.1 MGP_C3HHeJ_G0032016.1 mouse_genomes_project 7 57430075 57435037 + MGP_C3HHeJ_P0083745 Tubgcp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081000.1 MGP_C3HHeJ_G0031253.1 mouse_genomes_project 7 1501828 1509842 - MGP_C3HHeJ_P0081000 Syt5 protein_coding protein_coding MGP_C3HHeJ_T0081001.1 MGP_C3HHeJ_G0031253.1 mouse_genomes_project 7 1508962 1510816 - MGP_C3HHeJ_P0081001 Syt5 protein_coding protein_coding MGP_C3HHeJ_T0081002.1 MGP_C3HHeJ_G0031253.1 mouse_genomes_project 7 1509567 1510248 - MGP_C3HHeJ_P0081002 Syt5 protein_coding protein_coding MGP_C3HHeJ_T0082794.1 MGP_C3HHeJ_G0031768.1 mouse_genomes_project 7 30825698 30827023 + MGP_C3HHeJ_P0082794 Scgb1b3 protein_coding protein_coding MGP_C3HHeJ_T0085510.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114542095 114553696 - MGP_C3HHeJ_P0085510 Eif4g2 protein_coding protein_coding MGP_C3HHeJ_T0085511.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114543743 114544526 - Eif4g2 protein_coding processed_transcript MGP_C3HHeJ_T0085512.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114543966 114545636 - Eif4g2 protein_coding retained_intron MGP_C3HHeJ_T0085513.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114544774 114545624 - MGP_C3HHeJ_P0085513 Eif4g2 protein_coding protein_coding MGP_C3HHeJ_T0085514.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114545512 114546074 - Eif4g2 protein_coding retained_intron MGP_C3HHeJ_T0085515.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114546247 114546760 - Eif4g2 protein_coding retained_intron MGP_C3HHeJ_T0085516.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114546586 114547584 - Eif4g2 protein_coding processed_transcript MGP_C3HHeJ_T0085517.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114547897 114549126 - Eif4g2 protein_coding retained_intron MGP_C3HHeJ_T0085518.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114549324 114550739 - Eif4g2 protein_coding retained_intron MGP_C3HHeJ_T0085519.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114549796 114554396 - MGP_C3HHeJ_P0085519 Eif4g2 protein_coding protein_coding MGP_C3HHeJ_T0085520.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114550712 114553572 - MGP_C3HHeJ_P0085520 Eif4g2 protein_coding protein_coding MGP_C3HHeJ_T0085521.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114551795 114554204 - Eif4g2 protein_coding retained_intron MGP_C3HHeJ_T0085522.1 MGP_C3HHeJ_G0032562.1 mouse_genomes_project 7 114552293 114553230 - MGP_C3HHeJ_P0085522 Eif4g2 protein_coding protein_coding MGP_C3HHeJ_T0098544.1 MGP_C3HHeJ_G0036744.1 mouse_genomes_project 7 126861868 126862452 + Gm20274 sense_intronic sense_intronic MGP_C3HHeJ_T0086843.1 MGP_C3HHeJ_G0032823.1 mouse_genomes_project 7 138144138 138258443 + MGP_C3HHeJ_P0086843 Fank1 protein_coding protein_coding MGP_C3HHeJ_T0086844.1 MGP_C3HHeJ_G0032823.1 mouse_genomes_project 7 138144168 138253251 + MGP_C3HHeJ_P0086844 Fank1 protein_coding protein_coding MGP_C3HHeJ_T0086845.1 MGP_C3HHeJ_G0032823.1 mouse_genomes_project 7 138144219 138257776 + MGP_C3HHeJ_P0086845 Fank1 protein_coding protein_coding MGP_C3HHeJ_T0010746.1 MGP_C3HHeJ_G0008879.1 mouse_genomes_project 7 2141462 2141540 - Gm26217 miRNA miRNA MGP_C3HHeJ_T0081389.1 MGP_C3HHeJ_G0031405.1 mouse_genomes_project 7 14192873 14207594 - MGP_C3HHeJ_P0081389 C5ar1 protein_coding protein_coding MGP_C3HHeJ_T0081390.1 MGP_C3HHeJ_G0031405.1 mouse_genomes_project 7 14192875 14207392 - MGP_C3HHeJ_P0081390 C5ar1 protein_coding protein_coding MGP_C3HHeJ_T0005078.1 MGP_C3HHeJ_G0004321.1 mouse_genomes_project 7 14599045 14619737 + Gm29443 antisense antisense MGP_C3HHeJ_T0005079.1 MGP_C3HHeJ_G0004321.1 mouse_genomes_project 7 14599262 14619836 + Gm29443 antisense antisense MGP_C3HHeJ_T0018180.1 MGP_C3HHeJ_G0015444.1 mouse_genomes_project 7 104439506 104448044 - Gm20476 processed_transcript processed_transcript MGP_C3HHeJ_T0002256.1 MGP_C3HHeJ_G0002176.1 mouse_genomes_project 7 125942870 125945699 + TEC TEC MGP_C3HHeJ_T0083643.1 MGP_C3HHeJ_G0031984.1 mouse_genomes_project 7 48269567 48274730 + MGP_C3HHeJ_P0083643 Tmem86a protein_coding protein_coding MGP_C3HHeJ_T0015603.1 MGP_C3HHeJ_G0013707.1 mouse_genomes_project 7 45303542 45304470 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081574.1 MGP_C3HHeJ_G0031464.1 mouse_genomes_project 7 17501643 17512406 - MGP_C3HHeJ_P0081574 Qpctl protein_coding protein_coding MGP_C3HHeJ_T0081575.1 MGP_C3HHeJ_G0031464.1 mouse_genomes_project 7 17505575 17510643 - Qpctl protein_coding retained_intron MGP_C3HHeJ_T0086693.1 MGP_C3HHeJ_G0032789.1 mouse_genomes_project 7 134733473 134750110 - MGP_C3HHeJ_P0086693 Nsmce4a protein_coding protein_coding MGP_C3HHeJ_T0086694.1 MGP_C3HHeJ_G0032789.1 mouse_genomes_project 7 134733483 134737835 - Nsmce4a protein_coding retained_intron MGP_C3HHeJ_T0086695.1 MGP_C3HHeJ_G0032789.1 mouse_genomes_project 7 134734716 134775826 - MGP_C3HHeJ_P0086695 Nsmce4a protein_coding protein_coding MGP_C3HHeJ_T0086696.1 MGP_C3HHeJ_G0032789.1 mouse_genomes_project 7 134737410 134741369 - Nsmce4a protein_coding retained_intron MGP_C3HHeJ_T0086697.1 MGP_C3HHeJ_G0032789.1 mouse_genomes_project 7 134738844 134748687 - MGP_C3HHeJ_P0086697 Nsmce4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086698.1 MGP_C3HHeJ_G0032789.1 mouse_genomes_project 7 134741569 134744651 - Nsmce4a protein_coding retained_intron MGP_C3HHeJ_T0082540.1 MGP_C3HHeJ_G0031720.1 mouse_genomes_project 7 29793107 29796877 + MGP_C3HHeJ_P0082540 Tyrobp protein_coding protein_coding MGP_C3HHeJ_T0102202.1 MGP_C3HHeJ_G0040165.1 mouse_genomes_project 7 24892659 24900687 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082801.1 MGP_C3HHeJ_G0031773.1 mouse_genomes_project 7 34016740 34018139 + MGP_C3HHeJ_P0082801 Scgb1b27 protein_coding protein_coding MGP_C3HHeJ_T0082802.1 MGP_C3HHeJ_G0031773.1 mouse_genomes_project 7 34016824 34017707 + MGP_C3HHeJ_P0082802 Scgb1b27 protein_coding protein_coding MGP_C3HHeJ_T0083328.1 MGP_C3HHeJ_G0031902.1 mouse_genomes_project 7 46124799 46150189 - MGP_C3HHeJ_P0083328 Prr12 protein_coding protein_coding MGP_C3HHeJ_T0087007.1 MGP_C3HHeJ_G0032875.1 mouse_genomes_project 7 145026435 145027365 - MGP_C3HHeJ_P0087007 Olfr532 protein_coding protein_coding MGP_C3HHeJ_T0087322.1 MGP_C3HHeJ_G0032955.1 mouse_genomes_project 7 147221823 147224426 + MGP_C3HHeJ_P0087322 Tnni2 protein_coding protein_coding MGP_C3HHeJ_T0087323.1 MGP_C3HHeJ_G0032955.1 mouse_genomes_project 7 147221831 147224052 + MGP_C3HHeJ_P0087323 Tnni2 protein_coding protein_coding MGP_C3HHeJ_T0087324.1 MGP_C3HHeJ_G0032955.1 mouse_genomes_project 7 147222345 147224384 + MGP_C3HHeJ_P0087324 Tnni2 protein_coding protein_coding MGP_C3HHeJ_T0087325.1 MGP_C3HHeJ_G0032955.1 mouse_genomes_project 7 147222923 147224424 + Tnni2 protein_coding retained_intron MGP_C3HHeJ_T0087326.1 MGP_C3HHeJ_G0032955.1 mouse_genomes_project 7 147222995 147223875 + Tnni2 protein_coding retained_intron MGP_C3HHeJ_T0087327.1 MGP_C3HHeJ_G0032955.1 mouse_genomes_project 7 147223186 147224421 + MGP_C3HHeJ_P0087327 Tnni2 protein_coding protein_coding MGP_C3HHeJ_T0102251.1 MGP_C3HHeJ_G0040214.1 mouse_genomes_project 7 49275441 49422393 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081409.1 MGP_C3HHeJ_G0031410.1 mouse_genomes_project 7 14378389 14416439 + MGP_C3HHeJ_P0081409 Zc3h4 protein_coding protein_coding MGP_C3HHeJ_T0087528.1 MGP_C3HHeJ_G0032994.1 mouse_genomes_project 7 150209329 150218069 + MGP_C3HHeJ_P0087528 Mrgprf protein_coding protein_coding MGP_C3HHeJ_T0087529.1 MGP_C3HHeJ_G0032994.1 mouse_genomes_project 7 150209400 150217861 + MGP_C3HHeJ_P0087529 Mrgprf protein_coding protein_coding MGP_C3HHeJ_T0082096.1 MGP_C3HHeJ_G0031611.1 mouse_genomes_project 7 26326294 26334650 + Numbl protein_coding processed_transcript MGP_C3HHeJ_T0082097.1 MGP_C3HHeJ_G0031611.1 mouse_genomes_project 7 26326586 26349589 + MGP_C3HHeJ_P0082097 Numbl protein_coding protein_coding MGP_C3HHeJ_T0082098.1 MGP_C3HHeJ_G0031611.1 mouse_genomes_project 7 26326644 26332807 + Numbl protein_coding processed_transcript MGP_C3HHeJ_T0082099.1 MGP_C3HHeJ_G0031611.1 mouse_genomes_project 7 26326667 26349592 + Numbl protein_coding retained_intron MGP_C3HHeJ_T0082100.1 MGP_C3HHeJ_G0031611.1 mouse_genomes_project 7 26329221 26349429 + Numbl protein_coding retained_intron MGP_C3HHeJ_T0081336.1 MGP_C3HHeJ_G0031390.1 mouse_genomes_project 7 13668705 13675856 + MGP_C3HHeJ_P0081336 Obox5 protein_coding protein_coding MGP_C3HHeJ_T0081337.1 MGP_C3HHeJ_G0031390.1 mouse_genomes_project 7 13668951 13677000 + MGP_C3HHeJ_P0081337 Obox5 protein_coding protein_coding MGP_C3HHeJ_T0081338.1 MGP_C3HHeJ_G0031390.1 mouse_genomes_project 7 13668955 13675861 + MGP_C3HHeJ_P0081338 Obox5 protein_coding protein_coding MGP_C3HHeJ_T0081433.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14816013 14841859 + MGP_C3HHeJ_P0081433 Strn4 protein_coding protein_coding MGP_C3HHeJ_T0081434.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14816442 14841855 + MGP_C3HHeJ_P0081434 Strn4 protein_coding protein_coding MGP_C3HHeJ_T0081435.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14816503 14828944 + MGP_C3HHeJ_P0081435 Strn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081436.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14822186 14824325 + Strn4 protein_coding processed_transcript MGP_C3HHeJ_T0081437.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14823215 14834139 + MGP_C3HHeJ_P0081437 Strn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081438.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14824201 14828881 + Strn4 protein_coding retained_intron MGP_C3HHeJ_T0081439.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14828908 14831769 + Strn4 protein_coding retained_intron MGP_C3HHeJ_T0081440.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14830276 14831639 + Strn4 protein_coding processed_transcript MGP_C3HHeJ_T0081441.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14831228 14838915 + MGP_C3HHeJ_P0081441 Strn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081442.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14832778 14834155 + Strn4 protein_coding retained_intron MGP_C3HHeJ_T0081443.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14833329 14834820 + Strn4 protein_coding retained_intron MGP_C3HHeJ_T0081444.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14837151 14841859 + Strn4 protein_coding retained_intron MGP_C3HHeJ_T0081445.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14838567 14841164 + MGP_C3HHeJ_P0081445 Strn4 protein_coding protein_coding MGP_C3HHeJ_T0081446.1 MGP_C3HHeJ_G0031419.1 mouse_genomes_project 7 14839487 14840946 + Strn4 protein_coding retained_intron MGP_C3HHeJ_T0084349.1 MGP_C3HHeJ_G0032127.1 mouse_genomes_project 7 83477434 83529997 + MGP_C3HHeJ_P0084349 Zfp592 protein_coding protein_coding MGP_C3HHeJ_T0084350.1 MGP_C3HHeJ_G0032127.1 mouse_genomes_project 7 83506914 83508088 + Zfp592 protein_coding processed_transcript MGP_C3HHeJ_T0084351.1 MGP_C3HHeJ_G0032127.1 mouse_genomes_project 7 83522633 83523195 + Zfp592 protein_coding retained_intron MGP_C3HHeJ_T0084352.1 MGP_C3HHeJ_G0032127.1 mouse_genomes_project 7 83522909 83526286 + Zfp592 protein_coding retained_intron MGP_C3HHeJ_T0084010.1 MGP_C3HHeJ_G0032072.1 mouse_genomes_project 7 75550056 75599572 + MGP_C3HHeJ_P0084010 Rgma protein_coding protein_coding MGP_C3HHeJ_T0084011.1 MGP_C3HHeJ_G0032072.1 mouse_genomes_project 7 75565346 75588206 + MGP_C3HHeJ_P0084011 Rgma protein_coding protein_coding MGP_C3HHeJ_T0084012.1 MGP_C3HHeJ_G0032072.1 mouse_genomes_project 7 75565462 75567434 + Rgma protein_coding retained_intron MGP_C3HHeJ_T0010828.1 MGP_C3HHeJ_G0008961.1 mouse_genomes_project 7 121443857 121443962 + Gm24063 miRNA miRNA MGP_C3HHeJ_T0015537.1 MGP_C3HHeJ_G0013641.1 mouse_genomes_project 7 23409708 23410007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087515.1 MGP_C3HHeJ_G0032988.1 mouse_genomes_project 7 149715416 149720053 + MGP_C3HHeJ_P0087515 Fgf3 protein_coding protein_coding MGP_C3HHeJ_T0087516.1 MGP_C3HHeJ_G0032988.1 mouse_genomes_project 7 149715928 149721770 + MGP_C3HHeJ_P0087516 Fgf3 protein_coding protein_coding MGP_C3HHeJ_T0085066.1 MGP_C3HHeJ_G0032336.1 mouse_genomes_project 7 106177390 106178347 - MGP_C3HHeJ_P0085066 Olfr575 protein_coding protein_coding MGP_C3HHeJ_T0083108.1 MGP_C3HHeJ_G0031848.1 mouse_genomes_project 7 44813903 44818808 + MGP_C3HHeJ_P0083108 Klk9 protein_coding protein_coding MGP_C3HHeJ_T0100813.1 MGP_C3HHeJ_G0039007.1 mouse_genomes_project 7 35084605 35084735 - Gm25922 snoRNA snoRNA MGP_C3HHeJ_T0086030.1 MGP_C3HHeJ_G0032673.1 mouse_genomes_project 7 130323548 130329170 - MGP_C3HHeJ_P0086030 Lat protein_coding protein_coding MGP_C3HHeJ_T0086031.1 MGP_C3HHeJ_G0032673.1 mouse_genomes_project 7 130323551 130329163 - MGP_C3HHeJ_P0086031 Lat protein_coding protein_coding MGP_C3HHeJ_T0086032.1 MGP_C3HHeJ_G0032673.1 mouse_genomes_project 7 130323628 130324611 - Lat protein_coding retained_intron MGP_C3HHeJ_T0086033.1 MGP_C3HHeJ_G0032673.1 mouse_genomes_project 7 130327146 130329199 - Lat protein_coding retained_intron MGP_C3HHeJ_T0086034.1 MGP_C3HHeJ_G0032673.1 mouse_genomes_project 7 130327727 130329123 - MGP_C3HHeJ_P0086034 Lat protein_coding protein_coding MGP_C3HHeJ_T0086035.1 MGP_C3HHeJ_G0032673.1 mouse_genomes_project 7 130328285 130328969 - Lat protein_coding retained_intron MGP_C3HHeJ_T0083100.1 MGP_C3HHeJ_G0031845.1 mouse_genomes_project 7 44787044 44791733 + MGP_C3HHeJ_P0083100 Klk12 protein_coding protein_coding MGP_C3HHeJ_T0083101.1 MGP_C3HHeJ_G0031845.1 mouse_genomes_project 7 44787247 44791623 + MGP_C3HHeJ_P0083101 Klk12 protein_coding protein_coding MGP_C3HHeJ_T0098174.1 MGP_C3HHeJ_G0036386.1 mouse_genomes_project 7 28953740 28953856 - n-R5s153 rRNA rRNA MGP_C3HHeJ_T0085565.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077144 117136370 + MGP_C3HHeJ_P0085565 Far1 protein_coding protein_coding MGP_C3HHeJ_T0085566.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077171 117113987 + Far1 protein_coding retained_intron MGP_C3HHeJ_T0085567.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077171 117111069 + MGP_C3HHeJ_P0085567 Far1 protein_coding protein_coding MGP_C3HHeJ_T0085568.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077171 117136371 + MGP_C3HHeJ_P0085568 Far1 protein_coding protein_coding MGP_C3HHeJ_T0085569.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077172 117135318 + MGP_C3HHeJ_P0085569 Far1 protein_coding protein_coding MGP_C3HHeJ_T0085570.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077187 117113522 + MGP_C3HHeJ_P0085570 Far1 protein_coding protein_coding MGP_C3HHeJ_T0085571.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077191 117089637 + Far1 protein_coding retained_intron MGP_C3HHeJ_T0085572.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117077408 117102877 + MGP_C3HHeJ_P0085572 Far1 protein_coding protein_coding MGP_C3HHeJ_T0085573.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117110946 117116622 + Far1 protein_coding retained_intron MGP_C3HHeJ_T0085574.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117125774 117133012 + Far1 protein_coding retained_intron MGP_C3HHeJ_T0085575.1 MGP_C3HHeJ_G0032574.1 mouse_genomes_project 7 117130961 117133067 + Far1 protein_coding retained_intron MGP_C3HHeJ_T0084547.1 MGP_C3HHeJ_G0032204.1 mouse_genomes_project 7 92913971 92955850 - MGP_C3HHeJ_P0084547 Ccdc83 protein_coding protein_coding MGP_C3HHeJ_T0084548.1 MGP_C3HHeJ_G0032204.1 mouse_genomes_project 7 92925109 92955850 - MGP_C3HHeJ_P0084548 Ccdc83 protein_coding protein_coding MGP_C3HHeJ_T0084549.1 MGP_C3HHeJ_G0032204.1 mouse_genomes_project 7 92926469 92955850 - MGP_C3HHeJ_P0084549 Ccdc83 protein_coding protein_coding MGP_C3HHeJ_T0087291.1 MGP_C3HHeJ_G0032942.1 mouse_genomes_project 7 146774178 146789949 - MGP_C3HHeJ_P0087291 Dusp8 protein_coding protein_coding MGP_C3HHeJ_T0087292.1 MGP_C3HHeJ_G0032942.1 mouse_genomes_project 7 146778266 146790520 - MGP_C3HHeJ_P0087292 Dusp8 protein_coding protein_coding MGP_C3HHeJ_T0084738.1 MGP_C3HHeJ_G0032245.1 mouse_genomes_project 7 102115370 102144047 - MGP_C3HHeJ_P0084738 Dgat2 protein_coding protein_coding MGP_C3HHeJ_T0086076.1 MGP_C3HHeJ_G0032681.1 mouse_genomes_project 7 130455882 130459989 + MGP_C3HHeJ_P0086076 protein_coding protein_coding MGP_C3HHeJ_T0083412.1 MGP_C3HHeJ_G0031925.1 mouse_genomes_project 7 46512542 46517972 + MGP_C3HHeJ_P0083412 Kcna7 protein_coding protein_coding MGP_C3HHeJ_T0082968.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38244873 38305167 - MGP_C3HHeJ_P0082968 Uri1 protein_coding protein_coding MGP_C3HHeJ_T0082969.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38244874 38255335 - Uri1 protein_coding processed_transcript MGP_C3HHeJ_T0082970.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38245523 38305191 - MGP_C3HHeJ_P0082970 Uri1 protein_coding protein_coding MGP_C3HHeJ_T0082971.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38246182 38247410 - MGP_C3HHeJ_P0082971 Uri1 protein_coding protein_coding MGP_C3HHeJ_T0082972.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38246245 38309194 - MGP_C3HHeJ_P0082972 Uri1 protein_coding protein_coding MGP_C3HHeJ_T0082973.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38250982 38251512 - Uri1 protein_coding processed_transcript MGP_C3HHeJ_T0082974.1 MGP_C3HHeJ_G0031803.1 mouse_genomes_project 7 38255311 38305147 - MGP_C3HHeJ_P0082974 Uri1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008873.1 MGP_C3HHeJ_G0007148.1 mouse_genomes_project 7 85393203 85401875 + 1700010L04Rik lincRNA lincRNA MGP_C3HHeJ_T0008874.1 MGP_C3HHeJ_G0007148.1 mouse_genomes_project 7 85397713 85401874 + 1700010L04Rik lincRNA lincRNA MGP_C3HHeJ_T0008875.1 MGP_C3HHeJ_G0007148.1 mouse_genomes_project 7 85397723 85401430 + 1700010L04Rik lincRNA lincRNA MGP_C3HHeJ_T0002245.1 MGP_C3HHeJ_G0002165.1 mouse_genomes_project 7 82636326 82638645 + TEC TEC MGP_C3HHeJ_T0005125.1 MGP_C3HHeJ_G0004356.1 mouse_genomes_project 7 34780303 34788401 + Gm12781 antisense antisense MGP_C3HHeJ_T0010838.1 MGP_C3HHeJ_G0008971.1 mouse_genomes_project 7 138319940 138320055 - Gm23631 miRNA miRNA MGP_C3HHeJ_T0085302.1 MGP_C3HHeJ_G0032459.1 mouse_genomes_project 7 109038932 109046291 - MGP_C3HHeJ_P0085302 Tpp1 protein_coding protein_coding MGP_C3HHeJ_T0083642.1 MGP_C3HHeJ_G0031983.1 mouse_genomes_project 7 48208378 48226396 - MGP_C3HHeJ_P0083642 Spty2d1 protein_coding protein_coding MGP_C3HHeJ_T0083758.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57537628 57561702 - MGP_C3HHeJ_P0083758 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0083759.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57537628 57561665 - MGP_C3HHeJ_P0083759 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0083760.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57537628 57561471 - MGP_C3HHeJ_P0083760 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0083761.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57537628 57561676 - MGP_C3HHeJ_P0083761 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0083762.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57539590 57561618 - Nipa2 protein_coding processed_transcript MGP_C3HHeJ_T0083763.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57539855 57544402 - Nipa2 protein_coding retained_intron MGP_C3HHeJ_T0083764.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57542139 57561702 - MGP_C3HHeJ_P0083764 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0083765.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57542187 57561656 - MGP_C3HHeJ_P0083765 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0083766.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57548284 57561694 - Nipa2 protein_coding retained_intron MGP_C3HHeJ_T0083767.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57548461 57551279 - Nipa2 protein_coding retained_intron MGP_C3HHeJ_T0083768.1 MGP_C3HHeJ_G0032018.1 mouse_genomes_project 7 57550941 57561399 - MGP_C3HHeJ_P0083768 Nipa2 protein_coding protein_coding MGP_C3HHeJ_T0082426.1 MGP_C3HHeJ_G0031692.1 mouse_genomes_project 7 29185262 29205386 - MGP_C3HHeJ_P0082426 Zfp940 protein_coding protein_coding MGP_C3HHeJ_T0082427.1 MGP_C3HHeJ_G0031692.1 mouse_genomes_project 7 29194973 29205358 - Zfp940 protein_coding retained_intron MGP_C3HHeJ_T0082428.1 MGP_C3HHeJ_G0031692.1 mouse_genomes_project 7 29195659 29205365 - MGP_C3HHeJ_P0082428 Zfp940 protein_coding protein_coding MGP_C3HHeJ_T0082429.1 MGP_C3HHeJ_G0031692.1 mouse_genomes_project 7 29202674 29205159 - Zfp940 protein_coding processed_transcript MGP_C3HHeJ_T0102189.1 MGP_C3HHeJ_G0040153.1 mouse_genomes_project 7 13147328 13147615 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084181.1 MGP_C3HHeJ_G0032101.1 mouse_genomes_project 7 82199531 82202244 + MGP_C3HHeJ_P0084181 Mesp2 protein_coding protein_coding MGP_C3HHeJ_T0086722.1 MGP_C3HHeJ_G0032794.1 mouse_genomes_project 7 135403006 135412183 - MGP_C3HHeJ_P0086722 4933402N03Rik protein_coding protein_coding MGP_C3HHeJ_T0085129.1 MGP_C3HHeJ_G0032395.1 mouse_genomes_project 7 107355744 107356689 - MGP_C3HHeJ_P0085129 protein_coding protein_coding MGP_C3HHeJ_T0085051.1 MGP_C3HHeJ_G0032322.1 mouse_genomes_project 7 105896959 105897982 + MGP_C3HHeJ_P0085051 Olfr556 protein_coding protein_coding MGP_C3HHeJ_T0086412.1 MGP_C3HHeJ_G0032741.1 mouse_genomes_project 7 131620202 131625542 + MGP_C3HHeJ_P0086412 Tmem265 protein_coding protein_coding MGP_C3HHeJ_T0086413.1 MGP_C3HHeJ_G0032741.1 mouse_genomes_project 7 131620202 131623880 + MGP_C3HHeJ_P0086413 Tmem265 protein_coding protein_coding MGP_C3HHeJ_T0102242.1 MGP_C3HHeJ_G0040205.1 mouse_genomes_project 7 48735777 48736232 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084467.1 MGP_C3HHeJ_G0032163.1 mouse_genomes_project 7 87180874 87201541 - MGP_C3HHeJ_P0084467 Fah protein_coding protein_coding MGP_C3HHeJ_T0084468.1 MGP_C3HHeJ_G0032163.1 mouse_genomes_project 7 87191234 87202439 - MGP_C3HHeJ_P0084468 Fah protein_coding protein_coding MGP_C3HHeJ_T0084469.1 MGP_C3HHeJ_G0032163.1 mouse_genomes_project 7 87196769 87197793 - Fah protein_coding processed_transcript MGP_C3HHeJ_T0084470.1 MGP_C3HHeJ_G0032163.1 mouse_genomes_project 7 87197313 87201443 - Fah protein_coding retained_intron MGP_C3HHeJ_T0083057.1 MGP_C3HHeJ_G0031832.1 mouse_genomes_project 7 44440371 44460869 + MGP_C3HHeJ_P0083057 Gm45233 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083059.1 MGP_C3HHeJ_G0031832.1 mouse_genomes_project 7 44440374 44460952 + MGP_C3HHeJ_P0083059 Gm45233 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083652.1 MGP_C3HHeJ_G0031990.1 mouse_genomes_project 7 49421368 49428679 - MGP_C3HHeJ_P0083652 Mrgprx1 protein_coding protein_coding MGP_C3HHeJ_T0086320.1 MGP_C3HHeJ_G0032721.1 mouse_genomes_project 7 131207149 131211139 - MGP_C3HHeJ_P0086320 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086321.1 MGP_C3HHeJ_G0032721.1 mouse_genomes_project 7 131207151 131210994 - protein_coding retained_intron MGP_C3HHeJ_T0086322.1 MGP_C3HHeJ_G0032721.1 mouse_genomes_project 7 131209506 131210489 - MGP_C3HHeJ_P0086322 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086323.1 MGP_C3HHeJ_G0032721.1 mouse_genomes_project 7 131209571 131210987 - MGP_C3HHeJ_P0086323 protein_coding protein_coding MGP_C3HHeJ_T0086324.1 MGP_C3HHeJ_G0032721.1 mouse_genomes_project 7 131209666 131211011 - MGP_C3HHeJ_P0086324 protein_coding protein_coding MGP_C3HHeJ_T0086325.1 MGP_C3HHeJ_G0032721.1 mouse_genomes_project 7 131210136 131211095 - MGP_C3HHeJ_P0086325 protein_coding protein_coding MGP_C3HHeJ_T0100867.1 MGP_C3HHeJ_G0039061.1 mouse_genomes_project 7 146070914 146071044 - Gm25725 snoRNA snoRNA MGP_C3HHeJ_T0015543.1 MGP_C3HHeJ_G0013647.1 mouse_genomes_project 7 24490516 24491093 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015482.1 MGP_C3HHeJ_G0013586.1 mouse_genomes_project 7 185759 186639 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085358.1 MGP_C3HHeJ_G0032499.1 mouse_genomes_project 7 111281719 111282652 + MGP_C3HHeJ_P0085358 Olfr473 protein_coding protein_coding MGP_C3HHeJ_T0085204.1 MGP_C3HHeJ_G0032441.1 mouse_genomes_project 7 108609781 108610843 - MGP_C3HHeJ_P0085204 Olfr690 protein_coding protein_coding MGP_C3HHeJ_T0087013.1 MGP_C3HHeJ_G0032881.1 mouse_genomes_project 7 145250892 145251828 + MGP_C3HHeJ_P0087013 Olfr61 protein_coding protein_coding MGP_C3HHeJ_T0099565.1 MGP_C3HHeJ_G0037759.1 mouse_genomes_project 7 16772275 16772382 + Gm26062 snRNA snRNA MGP_C3HHeJ_T0081111.1 MGP_C3HHeJ_G0031288.1 mouse_genomes_project 7 2129010 2136148 - MGP_C3HHeJ_P0081111 Rfpl4 protein_coding protein_coding MGP_C3HHeJ_T0081112.1 MGP_C3HHeJ_G0031288.1 mouse_genomes_project 7 2129010 2136148 - MGP_C3HHeJ_P0081112 Rfpl4 protein_coding protein_coding MGP_C3HHeJ_T0083539.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47050892 47072063 + MGP_C3HHeJ_P0083539 Tmem143 protein_coding protein_coding MGP_C3HHeJ_T0083540.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47051032 47072063 + MGP_C3HHeJ_P0083540 Tmem143 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083541.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47051052 47072059 + MGP_C3HHeJ_P0083541 Tmem143 protein_coding protein_coding MGP_C3HHeJ_T0083542.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47051371 47056026 + Tmem143 protein_coding retained_intron MGP_C3HHeJ_T0083543.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47051374 47062861 + Tmem143 protein_coding processed_transcript MGP_C3HHeJ_T0083544.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47051380 47062109 + Tmem143 protein_coding retained_intron MGP_C3HHeJ_T0083545.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47051380 47064170 + MGP_C3HHeJ_P0083545 Tmem143 protein_coding protein_coding MGP_C3HHeJ_T0083546.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47063509 47064112 + Tmem143 protein_coding processed_transcript MGP_C3HHeJ_T0083547.1 MGP_C3HHeJ_G0031960.1 mouse_genomes_project 7 47070647 47071625 + Tmem143 protein_coding processed_transcript MGP_C3HHeJ_T0005160.1 MGP_C3HHeJ_G0004381.1 mouse_genomes_project 7 82093875 82095944 + 9330171B17Rik antisense antisense MGP_C3HHeJ_T0005161.1 MGP_C3HHeJ_G0004381.1 mouse_genomes_project 7 82093963 82095946 + 9330171B17Rik antisense antisense MGP_C3HHeJ_T0015486.1 MGP_C3HHeJ_G0013590.1 mouse_genomes_project 7 940087 940486 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081677.1 MGP_C3HHeJ_G0031493.1 mouse_genomes_project 7 18072715 18076111 - MGP_C3HHeJ_P0081677 Apoc4 protein_coding protein_coding MGP_C3HHeJ_T0086811.1 MGP_C3HHeJ_G0032818.1 mouse_genomes_project 7 137997652 138033074 + MGP_C3HHeJ_P0086811 Edrf1 protein_coding protein_coding MGP_C3HHeJ_T0086812.1 MGP_C3HHeJ_G0032818.1 mouse_genomes_project 7 137997802 138032282 + MGP_C3HHeJ_P0086812 Edrf1 protein_coding protein_coding MGP_C3HHeJ_T0086813.1 MGP_C3HHeJ_G0032818.1 mouse_genomes_project 7 137997970 137999452 + Edrf1 protein_coding retained_intron MGP_C3HHeJ_T0086814.1 MGP_C3HHeJ_G0032818.1 mouse_genomes_project 7 138017207 138021984 + MGP_C3HHeJ_P0086814 Edrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086815.1 MGP_C3HHeJ_G0032818.1 mouse_genomes_project 7 138026028 138032032 + MGP_C3HHeJ_P0086815 Edrf1 protein_coding protein_coding MGP_C3HHeJ_T0086816.1 MGP_C3HHeJ_G0032818.1 mouse_genomes_project 7 138027308 138031573 + Edrf1 protein_coding retained_intron MGP_C3HHeJ_T0087294.1 MGP_C3HHeJ_G0032944.1 mouse_genomes_project 7 146881178 146881601 - MGP_C3HHeJ_P0087294 protein_coding protein_coding MGP_C3HHeJ_T0085034.1 MGP_C3HHeJ_G0032307.1 mouse_genomes_project 7 105445417 105456403 - MGP_C3HHeJ_P0085034 Rhog protein_coding protein_coding MGP_C3HHeJ_T0085035.1 MGP_C3HHeJ_G0032307.1 mouse_genomes_project 7 105445417 105456368 - MGP_C3HHeJ_P0085035 Rhog protein_coding protein_coding MGP_C3HHeJ_T0102205.1 MGP_C3HHeJ_G0040168.1 mouse_genomes_project 7 25741121 25750311 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102145.1 MGP_C3HHeJ_G0040109.1 mouse_genomes_project 7 1170075 1170842 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082255.1 MGP_C3HHeJ_G0031653.1 mouse_genomes_project 7 27617556 27631108 + MGP_C3HHeJ_P0082255 Gmfg protein_coding protein_coding MGP_C3HHeJ_T0082256.1 MGP_C3HHeJ_G0031653.1 mouse_genomes_project 7 27617596 27631065 + MGP_C3HHeJ_P0082256 Gmfg protein_coding protein_coding MGP_C3HHeJ_T0082257.1 MGP_C3HHeJ_G0031653.1 mouse_genomes_project 7 27623117 27631101 + MGP_C3HHeJ_P0082257 Gmfg protein_coding protein_coding MGP_C3HHeJ_T0082258.1 MGP_C3HHeJ_G0031653.1 mouse_genomes_project 7 27623254 27630554 + MGP_C3HHeJ_P0082258 Gmfg protein_coding protein_coding MGP_C3HHeJ_T0082259.1 MGP_C3HHeJ_G0031653.1 mouse_genomes_project 7 27626292 27632795 + Gmfg protein_coding processed_transcript MGP_C3HHeJ_T0015506.1 MGP_C3HHeJ_G0013610.1 mouse_genomes_project 7 10302857 10303844 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084495.1 MGP_C3HHeJ_G0032185.1 mouse_genomes_project 7 89355004 89416611 - MGP_C3HHeJ_P0084495 Folh1 protein_coding protein_coding MGP_C3HHeJ_T0084496.1 MGP_C3HHeJ_G0032185.1 mouse_genomes_project 7 89355004 89416555 - MGP_C3HHeJ_P0084496 Folh1 protein_coding protein_coding MGP_C3HHeJ_T0102179.1 MGP_C3HHeJ_G0040143.1 mouse_genomes_project 7 12330314 12331244 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082680.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30280285 30296242 - MGP_C3HHeJ_P0082680 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082681.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30280710 30297483 - MGP_C3HHeJ_P0082681 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082682.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30280710 30297279 - MGP_C3HHeJ_P0082682 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082683.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30280710 30297248 - MGP_C3HHeJ_P0082683 Cd22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082684.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30280712 30295703 - MGP_C3HHeJ_P0082684 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082685.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30281146 30297548 - MGP_C3HHeJ_P0082685 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082686.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30281172 30297493 - MGP_C3HHeJ_P0082686 Cd22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082687.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30285357 30290738 - MGP_C3HHeJ_P0082687 Cd22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082688.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30293317 30296438 - Cd22 protein_coding processed_transcript MGP_C3HHeJ_T0082689.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30294692 30297475 - MGP_C3HHeJ_P0082689 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082690.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30294832 30295356 - Cd22 protein_coding retained_intron MGP_C3HHeJ_T0082691.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30294872 30297492 - Cd22 protein_coding processed_transcript MGP_C3HHeJ_T0082692.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30294911 30297492 - Cd22 protein_coding processed_transcript MGP_C3HHeJ_T0082693.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30294987 30297482 - MGP_C3HHeJ_P0082693 Cd22 protein_coding protein_coding MGP_C3HHeJ_T0082694.1 MGP_C3HHeJ_G0031752.1 mouse_genomes_project 7 30296406 30297556 - Cd22 protein_coding processed_transcript MGP_C3HHeJ_T0008762.1 MGP_C3HHeJ_G0007073.1 mouse_genomes_project 7 37557579 37563525 + Gm28077 lincRNA lincRNA MGP_C3HHeJ_T0005217.1 MGP_C3HHeJ_G0004419.1 mouse_genomes_project 7 130632412 130633464 - 2510046G10Rik antisense antisense MGP_C3HHeJ_T0005218.1 MGP_C3HHeJ_G0004419.1 mouse_genomes_project 7 130633092 130633440 - 2510046G10Rik antisense antisense MGP_C3HHeJ_T0008930.1 MGP_C3HHeJ_G0007185.1 mouse_genomes_project 7 129291539 129293692 + 4930571K23Rik lincRNA lincRNA MGP_C3HHeJ_T0008931.1 MGP_C3HHeJ_G0007185.1 mouse_genomes_project 7 129291690 129293686 + 4930571K23Rik lincRNA lincRNA MGP_C3HHeJ_T0102194.1 MGP_C3HHeJ_G0040158.1 mouse_genomes_project 7 13732985 13740152 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102313.1 MGP_C3HHeJ_G0040276.1 mouse_genomes_project 7 107850820 107851774 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102267.1 MGP_C3HHeJ_G0040230.1 mouse_genomes_project 7 87594579 88439028 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085116.1 MGP_C3HHeJ_G0032382.1 mouse_genomes_project 7 107187440 107188364 - MGP_C3HHeJ_P0085116 Olfr64 protein_coding protein_coding MGP_C3HHeJ_T0008899.1 MGP_C3HHeJ_G0007167.1 mouse_genomes_project 7 112359128 112369890 - Gm26599 lincRNA lincRNA MGP_C3HHeJ_T0015518.1 MGP_C3HHeJ_G0013622.1 mouse_genomes_project 7 13829631 13830591 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100832.1 MGP_C3HHeJ_G0039026.1 mouse_genomes_project 7 61256453 61256542 - Gm22373 snoRNA snoRNA MGP_C3HHeJ_T0084800.1 MGP_C3HHeJ_G0032266.1 mouse_genomes_project 7 103326464 103361545 + MGP_C3HHeJ_P0084800 P4ha3 protein_coding protein_coding MGP_C3HHeJ_T0084801.1 MGP_C3HHeJ_G0032266.1 mouse_genomes_project 7 103326464 103361545 + MGP_C3HHeJ_P0084801 P4ha3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084802.1 MGP_C3HHeJ_G0032266.1 mouse_genomes_project 7 103326486 103339331 + P4ha3 protein_coding retained_intron MGP_C3HHeJ_T0084803.1 MGP_C3HHeJ_G0032266.1 mouse_genomes_project 7 103334763 103361544 + MGP_C3HHeJ_P0084803 P4ha3 protein_coding protein_coding MGP_C3HHeJ_T0018215.1 MGP_C3HHeJ_G0015464.1 mouse_genomes_project 7 147816931 147848536 - R74862 processed_transcript processed_transcript MGP_C3HHeJ_T0018216.1 MGP_C3HHeJ_G0015464.1 mouse_genomes_project 7 147827768 147848805 - R74862 processed_transcript processed_transcript MGP_C3HHeJ_T0018217.1 MGP_C3HHeJ_G0015464.1 mouse_genomes_project 7 147828431 147848796 - R74862 processed_transcript processed_transcript MGP_C3HHeJ_T0102291.1 MGP_C3HHeJ_G0040254.1 mouse_genomes_project 7 89039530 89040437 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015698.1 MGP_C3HHeJ_G0013802.1 mouse_genomes_project 7 113992158 113992488 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082856.1 MGP_C3HHeJ_G0031783.1 mouse_genomes_project 7 34802836 34947634 - MGP_C3HHeJ_P0082856 Chst8 protein_coding protein_coding MGP_C3HHeJ_T0082857.1 MGP_C3HHeJ_G0031783.1 mouse_genomes_project 7 34802836 34947634 - MGP_C3HHeJ_P0082857 Chst8 protein_coding protein_coding MGP_C3HHeJ_T0082858.1 MGP_C3HHeJ_G0031783.1 mouse_genomes_project 7 34803666 34947634 - MGP_C3HHeJ_P0082858 Chst8 protein_coding protein_coding MGP_C3HHeJ_T0082859.1 MGP_C3HHeJ_G0031783.1 mouse_genomes_project 7 34804726 34947659 - Chst8 protein_coding processed_transcript MGP_C3HHeJ_T0082860.1 MGP_C3HHeJ_G0031783.1 mouse_genomes_project 7 34825362 34828494 - Chst8 protein_coding processed_transcript MGP_C3HHeJ_T0082861.1 MGP_C3HHeJ_G0031783.1 mouse_genomes_project 7 34826165 34947620 - Chst8 protein_coding processed_transcript MGP_C3HHeJ_T0086281.1 MGP_C3HHeJ_G0032712.1 mouse_genomes_project 7 131020776 131023096 - MGP_C3HHeJ_P0086281 protein_coding protein_coding MGP_C3HHeJ_T0086284.1 MGP_C3HHeJ_G0032712.1 mouse_genomes_project 7 131020918 131023064 - MGP_C3HHeJ_P0086284 protein_coding protein_coding MGP_C3HHeJ_T0086285.1 MGP_C3HHeJ_G0032712.1 mouse_genomes_project 7 131021120 131022424 - MGP_C3HHeJ_P0086285 protein_coding protein_coding MGP_C3HHeJ_T0086286.1 MGP_C3HHeJ_G0032712.1 mouse_genomes_project 7 131021149 131023061 - MGP_C3HHeJ_P0086286 protein_coding protein_coding MGP_C3HHeJ_T0083483.1 MGP_C3HHeJ_G0031944.1 mouse_genomes_project 7 46818074 46835307 - MGP_C3HHeJ_P0083483 Sec1 protein_coding protein_coding MGP_C3HHeJ_T0085849.1 MGP_C3HHeJ_G0032636.1 mouse_genomes_project 7 124829458 124831303 - MGP_C3HHeJ_P0085849 protein_coding protein_coding MGP_C3HHeJ_T0086776.1 MGP_C3HHeJ_G0032813.1 mouse_genomes_project 7 137148761 137175329 - MGP_C3HHeJ_P0086776 Mettl10 protein_coding protein_coding MGP_C3HHeJ_T0086777.1 MGP_C3HHeJ_G0032813.1 mouse_genomes_project 7 137148913 137175272 - MGP_C3HHeJ_P0086777 Mettl10 protein_coding protein_coding MGP_C3HHeJ_T0086778.1 MGP_C3HHeJ_G0032813.1 mouse_genomes_project 7 137149085 137175035 - Mettl10 protein_coding processed_transcript MGP_C3HHeJ_T0086779.1 MGP_C3HHeJ_G0032813.1 mouse_genomes_project 7 137152674 137175271 - MGP_C3HHeJ_P0086779 Mettl10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086780.1 MGP_C3HHeJ_G0032813.1 mouse_genomes_project 7 137152682 137175241 - MGP_C3HHeJ_P0086780 Mettl10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086781.1 MGP_C3HHeJ_G0032813.1 mouse_genomes_project 7 137172761 137175295 - Mettl10 protein_coding processed_transcript MGP_C3HHeJ_T0086699.1 MGP_C3HHeJ_G0032790.1 mouse_genomes_project 7 134780212 134890880 + MGP_C3HHeJ_P0086699 Tacc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086700.1 MGP_C3HHeJ_G0032790.1 mouse_genomes_project 7 134780212 134981041 + MGP_C3HHeJ_P0086700 Tacc2 protein_coding protein_coding MGP_C3HHeJ_T0086701.1 MGP_C3HHeJ_G0032790.1 mouse_genomes_project 7 134780212 134981039 + MGP_C3HHeJ_P0086701 Tacc2 protein_coding protein_coding MGP_C3HHeJ_T0086702.1 MGP_C3HHeJ_G0032790.1 mouse_genomes_project 7 134907773 134981041 + MGP_C3HHeJ_P0086702 Tacc2 protein_coding protein_coding MGP_C3HHeJ_T0086703.1 MGP_C3HHeJ_G0032790.1 mouse_genomes_project 7 134908175 134981042 + MGP_C3HHeJ_P0086703 Tacc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0015509.1 MGP_C3HHeJ_G0013613.1 mouse_genomes_project 7 11112303 11112625 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005173.1 MGP_C3HHeJ_G0004390.1 mouse_genomes_project 7 86160531 86196192 - Gm16638 antisense antisense MGP_C3HHeJ_T0005096.1 MGP_C3HHeJ_G0004334.1 mouse_genomes_project 7 24045681 24047252 + 9130221H12Rik antisense antisense MGP_C3HHeJ_T0005097.1 MGP_C3HHeJ_G0004334.1 mouse_genomes_project 7 24045717 24047258 + 9130221H12Rik antisense antisense MGP_C3HHeJ_T0086979.1 MGP_C3HHeJ_G0032861.1 mouse_genomes_project 7 144700878 144715536 - MGP_C3HHeJ_P0086979 Echs1 protein_coding protein_coding MGP_C3HHeJ_T0086980.1 MGP_C3HHeJ_G0032861.1 mouse_genomes_project 7 144700886 144715449 - Echs1 protein_coding retained_intron MGP_C3HHeJ_T0086981.1 MGP_C3HHeJ_G0032861.1 mouse_genomes_project 7 144701252 144708196 - MGP_C3HHeJ_P0086981 Echs1 protein_coding protein_coding MGP_C3HHeJ_T0086982.1 MGP_C3HHeJ_G0032861.1 mouse_genomes_project 7 144703954 144715475 - Echs1 protein_coding retained_intron MGP_C3HHeJ_T0086983.1 MGP_C3HHeJ_G0032861.1 mouse_genomes_project 7 144703954 144715475 - Echs1 protein_coding retained_intron MGP_C3HHeJ_T0086984.1 MGP_C3HHeJ_G0032861.1 mouse_genomes_project 7 144706928 144715467 - Echs1 protein_coding processed_transcript MGP_C3HHeJ_T0102245.1 MGP_C3HHeJ_G0040208.1 mouse_genomes_project 7 48887228 49422395 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085389.1 MGP_C3HHeJ_G0032530.1 mouse_genomes_project 7 112273692 112274747 - MGP_C3HHeJ_P0085389 Olfr517 protein_coding protein_coding MGP_C3HHeJ_T0008894.1 MGP_C3HHeJ_G0007164.1 mouse_genomes_project 7 102792046 102793620 - F730035P03Rik lincRNA lincRNA MGP_C3HHeJ_T0015697.1 MGP_C3HHeJ_G0013801.1 mouse_genomes_project 7 113987432 113988025 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083446.1 MGP_C3HHeJ_G0031934.1 mouse_genomes_project 7 46646886 46647740 - Ppp1r15a protein_coding processed_transcript MGP_C3HHeJ_T0083447.1 MGP_C3HHeJ_G0031934.1 mouse_genomes_project 7 46646887 46650011 - MGP_C3HHeJ_P0083447 Ppp1r15a protein_coding protein_coding MGP_C3HHeJ_T0083448.1 MGP_C3HHeJ_G0031934.1 mouse_genomes_project 7 46646892 46649889 - Ppp1r15a protein_coding retained_intron MGP_C3HHeJ_T0018213.1 MGP_C3HHeJ_G0015463.1 mouse_genomes_project 7 147327152 147342073 - Nctc1 processed_transcript antisense MGP_C3HHeJ_T0018214.1 MGP_C3HHeJ_G0015463.1 mouse_genomes_project 7 147337174 147342073 - Nctc1 processed_transcript retained_intron MGP_C3HHeJ_T0085197.1 MGP_C3HHeJ_G0032434.1 mouse_genomes_project 7 108341356 108342298 + MGP_C3HHeJ_P0085197 Olfr678 protein_coding protein_coding MGP_C3HHeJ_T0002198.1 MGP_C3HHeJ_G0002119.1 mouse_genomes_project 7 57572685 57574012 - TEC TEC MGP_C3HHeJ_T0015709.1 MGP_C3HHeJ_G0013813.1 mouse_genomes_project 7 126877609 126879154 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018212.1 MGP_C3HHeJ_G0015462.1 mouse_genomes_project 7 146638356 146639152 - processed_transcript processed_transcript MGP_C3HHeJ_T0015587.1 MGP_C3HHeJ_G0013691.1 mouse_genomes_project 7 42373543 42375685 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086236.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130861262 130864668 + MGP_C3HHeJ_P0086236 Hirip3 protein_coding protein_coding MGP_C3HHeJ_T0086237.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130861729 130862695 + Hirip3 protein_coding retained_intron MGP_C3HHeJ_T0086238.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130861754 130863016 + Hirip3 protein_coding retained_intron MGP_C3HHeJ_T0086239.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130861757 130863462 + Hirip3 protein_coding processed_transcript MGP_C3HHeJ_T0086240.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130861771 130862722 + MGP_C3HHeJ_P0086240 Hirip3 protein_coding protein_coding MGP_C3HHeJ_T0086241.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130863133 130863819 + Hirip3 protein_coding retained_intron MGP_C3HHeJ_T0086242.1 MGP_C3HHeJ_G0032703.1 mouse_genomes_project 7 130863706 130864209 + Hirip3 protein_coding retained_intron MGP_C3HHeJ_T0082454.1 MGP_C3HHeJ_G0031701.1 mouse_genomes_project 7 29427291 29463956 - MGP_C3HHeJ_P0082454 Gm26920 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085119.1 MGP_C3HHeJ_G0032385.1 mouse_genomes_project 7 107230111 107231065 + MGP_C3HHeJ_P0085119 Olfr632 protein_coding protein_coding MGP_C3HHeJ_T0098536.1 MGP_C3HHeJ_G0036737.1 mouse_genomes_project 7 3465799 3466382 + Gm16306 sense_intronic sense_intronic MGP_C3HHeJ_T0102262.1 MGP_C3HHeJ_G0040225.1 mouse_genomes_project 7 50034406 50035190 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083356.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46314023 46331219 + MGP_C3HHeJ_P0083356 Tead2 protein_coding protein_coding MGP_C3HHeJ_T0083357.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46314061 46319195 + Tead2 protein_coding retained_intron MGP_C3HHeJ_T0083358.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46314080 46316477 + Tead2 protein_coding retained_intron MGP_C3HHeJ_T0083359.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46314093 46324068 + MGP_C3HHeJ_P0083359 Tead2 protein_coding protein_coding MGP_C3HHeJ_T0083360.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46314122 46331219 + MGP_C3HHeJ_P0083360 Tead2 protein_coding protein_coding MGP_C3HHeJ_T0083361.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46314943 46317440 + MGP_C3HHeJ_P0083361 Tead2 protein_coding protein_coding MGP_C3HHeJ_T0083362.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46315481 46319248 + Tead2 protein_coding retained_intron MGP_C3HHeJ_T0083363.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46315481 46331234 + MGP_C3HHeJ_P0083363 Tead2 protein_coding protein_coding MGP_C3HHeJ_T0083364.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46316309 46322017 + Tead2 protein_coding processed_transcript MGP_C3HHeJ_T0083365.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46318178 46318976 + Tead2 protein_coding retained_intron MGP_C3HHeJ_T0083366.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46318716 46319471 + Tead2 protein_coding processed_transcript MGP_C3HHeJ_T0083367.1 MGP_C3HHeJ_G0031917.1 mouse_genomes_project 7 46329747 46330686 + Tead2 protein_coding processed_transcript MGP_C3HHeJ_T0080825.1 MGP_C3HHeJ_G0031223.1 mouse_genomes_project 7 409694 425866 - MGP_C3HHeJ_P0080825 Tarm1 protein_coding protein_coding MGP_C3HHeJ_T0080826.1 MGP_C3HHeJ_G0031223.1 mouse_genomes_project 7 412113 425932 - MGP_C3HHeJ_P0080826 Tarm1 protein_coding protein_coding MGP_C3HHeJ_T0080827.1 MGP_C3HHeJ_G0031223.1 mouse_genomes_project 7 412614 425826 - MGP_C3HHeJ_P0080827 Tarm1 protein_coding protein_coding MGP_C3HHeJ_T0083505.1 MGP_C3HHeJ_G0031951.1 mouse_genomes_project 7 46867440 46868147 - MGP_C3HHeJ_P0083505 Spaca4 protein_coding protein_coding MGP_C3HHeJ_T0085063.1 MGP_C3HHeJ_G0032333.1 mouse_genomes_project 7 106130860 106131829 - MGP_C3HHeJ_P0085063 Olfr571 protein_coding protein_coding MGP_C3HHeJ_T0087147.1 MGP_C3HHeJ_G0032919.1 mouse_genomes_project 7 145972750 145975744 + MGP_C3HHeJ_P0087147 Drd4 protein_coding protein_coding MGP_C3HHeJ_T0085933.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127000313 127046684 + Tnrc6a protein_coding processed_transcript MGP_C3HHeJ_T0085934.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127000605 127088094 + MGP_C3HHeJ_P0085934 Tnrc6a protein_coding protein_coding MGP_C3HHeJ_T0085935.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127000609 127089408 + MGP_C3HHeJ_P0085935 Tnrc6a protein_coding protein_coding MGP_C3HHeJ_T0085936.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127000684 127061751 + MGP_C3HHeJ_P0085936 Tnrc6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085937.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127053180 127054963 + Tnrc6a protein_coding retained_intron MGP_C3HHeJ_T0085938.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127054689 127088085 + MGP_C3HHeJ_P0085938 Tnrc6a protein_coding protein_coding MGP_C3HHeJ_T0085939.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127055445 127059757 + Tnrc6a protein_coding retained_intron MGP_C3HHeJ_T0085940.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127055704 127058491 + Tnrc6a protein_coding retained_intron MGP_C3HHeJ_T0085941.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127056916 127058256 + Tnrc6a protein_coding retained_intron MGP_C3HHeJ_T0085942.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127058273 127064680 + MGP_C3HHeJ_P0085942 Tnrc6a protein_coding protein_coding MGP_C3HHeJ_T0085943.1 MGP_C3HHeJ_G0032657.1 mouse_genomes_project 7 127063979 127087833 + Tnrc6a protein_coding retained_intron MGP_C3HHeJ_T0084168.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82103809 82118120 - MGP_C3HHeJ_P0084168 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0084169.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82106138 82117504 - MGP_C3HHeJ_P0084169 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0084170.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82106138 82118109 - MGP_C3HHeJ_P0084170 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0084171.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82107355 82108263 - MGP_C3HHeJ_P0084171 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0084172.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82110117 82115198 - MGP_C3HHeJ_P0084172 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0084173.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82111854 82118168 - MGP_C3HHeJ_P0084173 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0084174.1 MGP_C3HHeJ_G0032097.1 mouse_genomes_project 7 82114315 82118236 - MGP_C3HHeJ_P0084174 Plin1 protein_coding protein_coding MGP_C3HHeJ_T0005243.1 MGP_C3HHeJ_G0004438.1 mouse_genomes_project 7 147930122 147935700 - Gm28821 antisense antisense MGP_C3HHeJ_T0015524.1 MGP_C3HHeJ_G0013628.1 mouse_genomes_project 7 15100893 15101358 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015534.1 MGP_C3HHeJ_G0013638.1 mouse_genomes_project 7 22863509 22869346 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018145.1 MGP_C3HHeJ_G0015433.1 mouse_genomes_project 7 57633031 57644075 - Gm34121 processed_transcript lincRNA MGP_C3HHeJ_T0018146.1 MGP_C3HHeJ_G0015433.1 mouse_genomes_project 7 57640492 57644040 - Gm34121 processed_transcript retained_intron MGP_C3HHeJ_T0102207.1 MGP_C3HHeJ_G0040170.1 mouse_genomes_project 7 30698589 30698976 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099609.1 MGP_C3HHeJ_G0037803.1 mouse_genomes_project 7 127282924 127283027 - Gm23559 snRNA snRNA MGP_C3HHeJ_T0002191.1 MGP_C3HHeJ_G0002112.1 mouse_genomes_project 7 50920894 50922885 + TEC TEC MGP_C3HHeJ_T0086999.1 MGP_C3HHeJ_G0032869.1 mouse_genomes_project 7 144842447 144898071 + MGP_C3HHeJ_P0086999 5830411N06Rik protein_coding protein_coding MGP_C3HHeJ_T0087000.1 MGP_C3HHeJ_G0032869.1 mouse_genomes_project 7 144842524 144900221 + MGP_C3HHeJ_P0087000 5830411N06Rik protein_coding protein_coding MGP_C3HHeJ_T0087001.1 MGP_C3HHeJ_G0032869.1 mouse_genomes_project 7 144842527 144900221 + MGP_C3HHeJ_P0087001 5830411N06Rik protein_coding protein_coding MGP_C3HHeJ_T0083633.1 MGP_C3HHeJ_G0031980.1 mouse_genomes_project 7 48104049 48135964 - MGP_C3HHeJ_P0083633 Tsg101 protein_coding protein_coding MGP_C3HHeJ_T0083634.1 MGP_C3HHeJ_G0031980.1 mouse_genomes_project 7 48104127 48106145 - Tsg101 protein_coding processed_transcript MGP_C3HHeJ_T0083635.1 MGP_C3HHeJ_G0031980.1 mouse_genomes_project 7 48117031 48130401 - MGP_C3HHeJ_P0083635 Tsg101 protein_coding protein_coding MGP_C3HHeJ_T0083636.1 MGP_C3HHeJ_G0031980.1 mouse_genomes_project 7 48122595 48125052 - Tsg101 protein_coding retained_intron MGP_C3HHeJ_T0083637.1 MGP_C3HHeJ_G0031980.1 mouse_genomes_project 7 48123057 48135932 - MGP_C3HHeJ_P0083637 Tsg101 protein_coding protein_coding MGP_C3HHeJ_T0085191.1 MGP_C3HHeJ_G0032428.1 mouse_genomes_project 7 108143335 108144292 - MGP_C3HHeJ_P0085191 Olfr668 protein_coding protein_coding MGP_C3HHeJ_T0087006.1 MGP_C3HHeJ_G0032874.1 mouse_genomes_project 7 145007731 145008646 - MGP_C3HHeJ_P0087006 Olfr531 protein_coding protein_coding MGP_C3HHeJ_T0081726.1 MGP_C3HHeJ_G0031508.1 mouse_genomes_project 7 18426939 18462267 + MGP_C3HHeJ_P0081726 Nlrp9b protein_coding protein_coding MGP_C3HHeJ_T0081727.1 MGP_C3HHeJ_G0031508.1 mouse_genomes_project 7 18436547 18462216 + MGP_C3HHeJ_P0081727 Nlrp9b protein_coding protein_coding MGP_C3HHeJ_T0084002.1 MGP_C3HHeJ_G0032069.1 mouse_genomes_project 7 72428782 72437430 - MGP_C3HHeJ_P0084002 Nr2f2 protein_coding protein_coding MGP_C3HHeJ_T0084003.1 MGP_C3HHeJ_G0032069.1 mouse_genomes_project 7 72431267 72443565 - MGP_C3HHeJ_P0084003 Nr2f2 protein_coding protein_coding MGP_C3HHeJ_T0087078.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145731836 145745465 + MGP_C3HHeJ_P0087078 Pkp3 protein_coding protein_coding MGP_C3HHeJ_T0087079.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145732765 145736265 + MGP_C3HHeJ_P0087079 Pkp3 protein_coding protein_coding MGP_C3HHeJ_T0087080.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145733378 145745465 + MGP_C3HHeJ_P0087080 Pkp3 protein_coding protein_coding MGP_C3HHeJ_T0087081.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145733393 145736740 + MGP_C3HHeJ_P0087081 Pkp3 protein_coding protein_coding MGP_C3HHeJ_T0087082.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145733398 145736314 + MGP_C3HHeJ_P0087082 Pkp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087083.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145742715 145743832 + Pkp3 protein_coding retained_intron MGP_C3HHeJ_T0087084.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145743100 145745462 + Pkp3 protein_coding retained_intron MGP_C3HHeJ_T0087085.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145743162 145743803 + Pkp3 protein_coding retained_intron MGP_C3HHeJ_T0087086.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145744365 145744871 + Pkp3 protein_coding retained_intron MGP_C3HHeJ_T0087087.1 MGP_C3HHeJ_G0032906.1 mouse_genomes_project 7 145744815 145745464 + MGP_C3HHeJ_P0087087 Pkp3 protein_coding protein_coding MGP_C3HHeJ_T0084568.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 93805521 95206226 + MGP_C3HHeJ_P0084568 Dlg2 protein_coding protein_coding MGP_C3HHeJ_T0084569.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 93805541 95039905 + Dlg2 protein_coding processed_transcript MGP_C3HHeJ_T0084570.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 93805543 95206226 + MGP_C3HHeJ_P0084570 Dlg2 protein_coding protein_coding MGP_C3HHeJ_T0084571.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94409971 94739775 + Dlg2 protein_coding retained_intron MGP_C3HHeJ_T0084572.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94451874 95206226 + MGP_C3HHeJ_P0084572 Dlg2 protein_coding protein_coding MGP_C3HHeJ_T0084573.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94452125 94688334 + Dlg2 protein_coding processed_transcript MGP_C3HHeJ_T0084574.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94452127 95203839 + MGP_C3HHeJ_P0084574 Dlg2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084575.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94811280 95206226 + MGP_C3HHeJ_P0084575 Dlg2 protein_coding protein_coding MGP_C3HHeJ_T0084576.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94939057 95041603 + Dlg2 protein_coding retained_intron MGP_C3HHeJ_T0084577.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94986549 95205706 + Dlg2 protein_coding processed_transcript MGP_C3HHeJ_T0084578.1 MGP_C3HHeJ_G0032210.1 mouse_genomes_project 7 94986753 95189401 + Dlg2 protein_coding processed_transcript MGP_C3HHeJ_T0008786.1 MGP_C3HHeJ_G0007089.1 mouse_genomes_project 7 45267157 45274172 + Gm36864 lincRNA lincRNA MGP_C3HHeJ_T0086436.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131667294 131674697 - MGP_C3HHeJ_P0086436 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086437.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131667294 131675536 - MGP_C3HHeJ_P0086437 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086438.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131667294 131675479 - MGP_C3HHeJ_P0086438 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086439.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131668718 131675131 - MGP_C3HHeJ_P0086439 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086440.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131668850 131675522 - MGP_C3HHeJ_P0086440 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086441.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131669019 131676061 - MGP_C3HHeJ_P0086441 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086442.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131672167 131674624 - MGP_C3HHeJ_P0086442 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086443.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131672247 131675464 - MGP_C3HHeJ_P0086443 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0086444.1 MGP_C3HHeJ_G0032745.1 mouse_genomes_project 7 131672314 131674629 - MGP_C3HHeJ_P0086444 Zfp629 protein_coding protein_coding MGP_C3HHeJ_T0008719.1 MGP_C3HHeJ_G0007035.1 mouse_genomes_project 7 10515186 10534789 - 1810019N24Rik lincRNA lincRNA MGP_C3HHeJ_T0008720.1 MGP_C3HHeJ_G0007035.1 mouse_genomes_project 7 10516284 10516661 - 1810019N24Rik lincRNA lincRNA MGP_C3HHeJ_T0087339.1 MGP_C3HHeJ_G0032957.1 mouse_genomes_project 7 147270924 147286600 - MGP_C3HHeJ_P0087339 protein_coding protein_coding MGP_C3HHeJ_T0087340.1 MGP_C3HHeJ_G0032957.1 mouse_genomes_project 7 147272600 147276822 - protein_coding processed_transcript MGP_C3HHeJ_T0099619.1 MGP_C3HHeJ_G0037813.1 mouse_genomes_project 7 143721857 143721956 - Gm27975 snRNA snRNA MGP_C3HHeJ_T0084119.1 MGP_C3HHeJ_G0032090.1 mouse_genomes_project 7 81646002 81735253 + MGP_C3HHeJ_P0084119 Abhd2 protein_coding protein_coding MGP_C3HHeJ_T0084120.1 MGP_C3HHeJ_G0032090.1 mouse_genomes_project 7 81646057 81714707 + Abhd2 protein_coding processed_transcript MGP_C3HHeJ_T0082215.1 MGP_C3HHeJ_G0031643.1 mouse_genomes_project 7 27457020 27463497 - MGP_C3HHeJ_P0082215 protein_coding protein_coding MGP_C3HHeJ_T0082216.1 MGP_C3HHeJ_G0031643.1 mouse_genomes_project 7 27457020 27463549 - MGP_C3HHeJ_P0082216 protein_coding protein_coding MGP_C3HHeJ_T0082217.1 MGP_C3HHeJ_G0031643.1 mouse_genomes_project 7 27459428 27460551 - MGP_C3HHeJ_P0082217 protein_coding protein_coding MGP_C3HHeJ_T0098547.1 MGP_C3HHeJ_G0036747.1 mouse_genomes_project 7 149337412 149337873 - Gm14376 sense_intronic sense_intronic MGP_C3HHeJ_T0083532.1 MGP_C3HHeJ_G0031957.1 mouse_genomes_project 7 46985476 47020520 - MGP_C3HHeJ_P0083532 Grin2d protein_coding protein_coding MGP_C3HHeJ_T0083533.1 MGP_C3HHeJ_G0031957.1 mouse_genomes_project 7 47019766 47024912 - MGP_C3HHeJ_P0083533 Grin2d protein_coding protein_coding MGP_C3HHeJ_T0086726.1 MGP_C3HHeJ_G0032797.1 mouse_genomes_project 7 135599951 135603521 - MGP_C3HHeJ_P0086726 1700007K09Rik protein_coding protein_coding MGP_C3HHeJ_T0086727.1 MGP_C3HHeJ_G0032797.1 mouse_genomes_project 7 135600106 135601333 - MGP_C3HHeJ_P0086727 1700007K09Rik protein_coding protein_coding MGP_C3HHeJ_T0086108.1 MGP_C3HHeJ_G0032685.1 mouse_genomes_project 7 130558119 130562290 + MGP_C3HHeJ_P0086108 Apobr protein_coding protein_coding MGP_C3HHeJ_T0086109.1 MGP_C3HHeJ_G0032685.1 mouse_genomes_project 7 130558168 130561129 + MGP_C3HHeJ_P0086109 Apobr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086110.1 MGP_C3HHeJ_G0032685.1 mouse_genomes_project 7 130558169 130561548 + MGP_C3HHeJ_P0086110 Apobr protein_coding protein_coding MGP_C3HHeJ_T0086111.1 MGP_C3HHeJ_G0032685.1 mouse_genomes_project 7 130560257 130561623 + MGP_C3HHeJ_P0086111 Apobr protein_coding protein_coding MGP_C3HHeJ_T0086112.1 MGP_C3HHeJ_G0032685.1 mouse_genomes_project 7 130560851 130561503 + MGP_C3HHeJ_P0086112 Apobr protein_coding protein_coding MGP_C3HHeJ_T0086754.1 MGP_C3HHeJ_G0032807.1 mouse_genomes_project 7 136339727 136453001 - MGP_C3HHeJ_P0086754 Cpxm2 protein_coding protein_coding MGP_C3HHeJ_T0086755.1 MGP_C3HHeJ_G0032807.1 mouse_genomes_project 7 136352173 136357186 - Cpxm2 protein_coding retained_intron MGP_C3HHeJ_T0086756.1 MGP_C3HHeJ_G0032807.1 mouse_genomes_project 7 136354606 136452884 - Cpxm2 protein_coding retained_intron MGP_C3HHeJ_T0086757.1 MGP_C3HHeJ_G0032807.1 mouse_genomes_project 7 136406351 136443886 - Cpxm2 protein_coding processed_transcript MGP_C3HHeJ_T0010750.1 MGP_C3HHeJ_G0008883.1 mouse_genomes_project 7 15805364 15805474 + Gm25068 miRNA miRNA MGP_C3HHeJ_T0085000.1 MGP_C3HHeJ_G0032302.1 mouse_genomes_project 7 105275852 105288812 - MGP_C3HHeJ_P0085000 Art5 protein_coding protein_coding MGP_C3HHeJ_T0085001.1 MGP_C3HHeJ_G0032302.1 mouse_genomes_project 7 105275853 105279203 - MGP_C3HHeJ_P0085001 Art5 protein_coding protein_coding MGP_C3HHeJ_T0085002.1 MGP_C3HHeJ_G0032302.1 mouse_genomes_project 7 105276087 105278913 - MGP_C3HHeJ_P0085002 Art5 protein_coding protein_coding MGP_C3HHeJ_T0085003.1 MGP_C3HHeJ_G0032302.1 mouse_genomes_project 7 105276087 105278467 - MGP_C3HHeJ_P0085003 Art5 protein_coding protein_coding MGP_C3HHeJ_T0084396.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84388971 84414432 + MGP_C3HHeJ_P0084396 Tm6sf1 protein_coding protein_coding MGP_C3HHeJ_T0084397.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84388990 84403849 + Tm6sf1 protein_coding retained_intron MGP_C3HHeJ_T0084398.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84389088 84395371 + Tm6sf1 protein_coding processed_transcript MGP_C3HHeJ_T0084399.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84389121 84414795 + MGP_C3HHeJ_P0084399 Tm6sf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084400.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84389419 84407889 + MGP_C3HHeJ_P0084400 Tm6sf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084401.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84392661 84413776 + MGP_C3HHeJ_P0084401 Tm6sf1 protein_coding protein_coding MGP_C3HHeJ_T0084402.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84399704 84402387 + Tm6sf1 protein_coding retained_intron MGP_C3HHeJ_T0084403.1 MGP_C3HHeJ_G0032143.1 mouse_genomes_project 7 84403464 84413764 + Tm6sf1 protein_coding retained_intron MGP_C3HHeJ_T0085579.1 MGP_C3HHeJ_G0032577.1 mouse_genomes_project 7 117626415 117706457 - MGP_C3HHeJ_P0085579 Rras2 protein_coding protein_coding MGP_C3HHeJ_T0086512.1 MGP_C3HHeJ_G0032759.1 mouse_genomes_project 7 131962670 131971896 - MGP_C3HHeJ_P0086512 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015484.1 MGP_C3HHeJ_G0013588.1 mouse_genomes_project 7 894071 894945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010793.1 MGP_C3HHeJ_G0008926.1 mouse_genomes_project 7 63445518 63445598 - Mir344d-3 miRNA miRNA MGP_C3HHeJ_T0018186.1 MGP_C3HHeJ_G0015448.1 mouse_genomes_project 7 121920227 121921922 + 4930583K01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0087437.1 MGP_C3HHeJ_G0032972.1 mouse_genomes_project 7 148258958 148296951 + MGP_C3HHeJ_P0087437 Slc22a18 protein_coding protein_coding MGP_C3HHeJ_T0087438.1 MGP_C3HHeJ_G0032972.1 mouse_genomes_project 7 148271321 148273960 + Slc22a18 protein_coding processed_transcript MGP_C3HHeJ_T0087439.1 MGP_C3HHeJ_G0032972.1 mouse_genomes_project 7 148271368 148294670 + MGP_C3HHeJ_P0087439 Slc22a18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087440.1 MGP_C3HHeJ_G0032972.1 mouse_genomes_project 7 148271380 148296953 + MGP_C3HHeJ_P0087440 Slc22a18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087441.1 MGP_C3HHeJ_G0032972.1 mouse_genomes_project 7 148271405 148294671 + MGP_C3HHeJ_P0087441 Slc22a18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099599.1 MGP_C3HHeJ_G0037793.1 mouse_genomes_project 7 112491772 112491879 - Gm25450 snRNA snRNA MGP_C3HHeJ_T0081640.1 MGP_C3HHeJ_G0031480.1 mouse_genomes_project 7 17797703 17800133 - MGP_C3HHeJ_P0081640 protein_coding protein_coding MGP_C3HHeJ_T0005563.1 MGP_C3HHeJ_G0004675.1 mouse_genomes_project 7 67756759 67757746 - Gm20684 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0082822.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34296317 34326072 - MGP_C3HHeJ_P0082822 protein_coding protein_coding MGP_C3HHeJ_T0082823.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34297146 34305360 - protein_coding retained_intron MGP_C3HHeJ_T0082824.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34297193 34302890 - MGP_C3HHeJ_P0082824 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082825.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34297370 34308428 - MGP_C3HHeJ_P0082825 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082826.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34297394 34324844 - MGP_C3HHeJ_P0082826 protein_coding protein_coding MGP_C3HHeJ_T0082827.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34297676 34325993 - MGP_C3HHeJ_P0082827 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082828.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34297802 34301256 - protein_coding retained_intron MGP_C3HHeJ_T0082829.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34310200 34325999 - protein_coding retained_intron MGP_C3HHeJ_T0082830.1 MGP_C3HHeJ_G0031778.1 mouse_genomes_project 7 34322968 34325641 - protein_coding processed_transcript MGP_C3HHeJ_T0102301.1 MGP_C3HHeJ_G0040264.1 mouse_genomes_project 7 106719420 106720387 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100829.1 MGP_C3HHeJ_G0039023.1 mouse_genomes_project 7 60920645 60928583 - snoRNA snoRNA MGP_C3HHeJ_T0083829.1 MGP_C3HHeJ_G0032037.1 mouse_genomes_project 7 65773742 65785785 + MGP_C3HHeJ_P0083829 E030018B13Rik protein_coding protein_coding MGP_C3HHeJ_T0086898.1 MGP_C3HHeJ_G0032842.1 mouse_genomes_project 7 143478028 143568617 + MGP_C3HHeJ_P0086898 Jakmip3 protein_coding protein_coding MGP_C3HHeJ_T0086899.1 MGP_C3HHeJ_G0032842.1 mouse_genomes_project 7 143478048 143568611 + MGP_C3HHeJ_P0086899 Jakmip3 protein_coding protein_coding MGP_C3HHeJ_T0086900.1 MGP_C3HHeJ_G0032842.1 mouse_genomes_project 7 143525979 143586642 + MGP_C3HHeJ_P0086900 Jakmip3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086901.1 MGP_C3HHeJ_G0032842.1 mouse_genomes_project 7 143584886 143604268 + MGP_C3HHeJ_P0086901 Jakmip3 protein_coding protein_coding MGP_C3HHeJ_T0082493.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29620536 29664183 - MGP_C3HHeJ_P0082493 Wdr62 protein_coding protein_coding MGP_C3HHeJ_T0082494.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29620536 29643204 - MGP_C3HHeJ_P0082494 Wdr62 protein_coding protein_coding MGP_C3HHeJ_T0082495.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29620536 29664160 - MGP_C3HHeJ_P0082495 Wdr62 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082496.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29620541 29621282 - Wdr62 protein_coding processed_transcript MGP_C3HHeJ_T0082497.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29622095 29622677 - MGP_C3HHeJ_P0082497 Wdr62 protein_coding protein_coding MGP_C3HHeJ_T0082498.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29625677 29632121 - Wdr62 protein_coding retained_intron MGP_C3HHeJ_T0082499.1 MGP_C3HHeJ_G0031712.1 mouse_genomes_project 7 29630067 29630811 - Wdr62 protein_coding retained_intron MGP_C3HHeJ_T0015613.1 MGP_C3HHeJ_G0013717.1 mouse_genomes_project 7 56824683 56826489 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084431.1 MGP_C3HHeJ_G0032150.1 mouse_genomes_project 7 85410150 85414192 + MGP_C3HHeJ_P0084431 Mex3b protein_coding protein_coding MGP_C3HHeJ_T0081405.1 MGP_C3HHeJ_G0031408.1 mouse_genomes_project 7 14279507 14288022 + MGP_C3HHeJ_P0081405 Bbc3 protein_coding protein_coding MGP_C3HHeJ_T0081406.1 MGP_C3HHeJ_G0031408.1 mouse_genomes_project 7 14280247 14283569 + MGP_C3HHeJ_P0081406 Bbc3 protein_coding protein_coding MGP_C3HHeJ_T0081407.1 MGP_C3HHeJ_G0031408.1 mouse_genomes_project 7 14283347 14287515 + Bbc3 protein_coding processed_transcript MGP_C3HHeJ_T0102279.1 MGP_C3HHeJ_G0040242.1 mouse_genomes_project 7 88140594 88141501 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086466.1 MGP_C3HHeJ_G0032750.1 mouse_genomes_project 7 131834820 131840156 + MGP_C3HHeJ_P0086466 Orai3 protein_coding protein_coding MGP_C3HHeJ_T0086467.1 MGP_C3HHeJ_G0032750.1 mouse_genomes_project 7 131834820 131840156 + MGP_C3HHeJ_P0086467 Orai3 protein_coding protein_coding MGP_C3HHeJ_T0086468.1 MGP_C3HHeJ_G0032750.1 mouse_genomes_project 7 131834820 131839698 + MGP_C3HHeJ_P0086468 Orai3 protein_coding protein_coding MGP_C3HHeJ_T0005246.1 MGP_C3HHeJ_G0004441.1 mouse_genomes_project 7 148400514 148401680 + Gm15579 antisense antisense MGP_C3HHeJ_T0082888.1 MGP_C3HHeJ_G0031790.1 mouse_genomes_project 7 35498891 35561612 + MGP_C3HHeJ_P0082888 Rhpn2 protein_coding protein_coding MGP_C3HHeJ_T0082889.1 MGP_C3HHeJ_G0031790.1 mouse_genomes_project 7 35499051 35561608 + MGP_C3HHeJ_P0082889 Rhpn2 protein_coding protein_coding MGP_C3HHeJ_T0082890.1 MGP_C3HHeJ_G0031790.1 mouse_genomes_project 7 35548676 35551017 + Rhpn2 protein_coding retained_intron MGP_C3HHeJ_T0082891.1 MGP_C3HHeJ_G0031790.1 mouse_genomes_project 7 35551887 35554533 + Rhpn2 protein_coding retained_intron MGP_C3HHeJ_T0083069.1 MGP_C3HHeJ_G0031834.1 mouse_genomes_project 7 44470268 44487463 - MGP_C3HHeJ_P0083069 Iglon5 protein_coding protein_coding MGP_C3HHeJ_T0083070.1 MGP_C3HHeJ_G0031834.1 mouse_genomes_project 7 44471538 44475593 - MGP_C3HHeJ_P0083070 Iglon5 protein_coding protein_coding MGP_C3HHeJ_T0002249.1 MGP_C3HHeJ_G0002169.1 mouse_genomes_project 7 95400967 95404598 + TEC TEC MGP_C3HHeJ_T0015631.1 MGP_C3HHeJ_G0013735.1 mouse_genomes_project 7 69749059 69750064 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081161.1 MGP_C3HHeJ_G0031312.1 mouse_genomes_project 7 3560006 3561334 - MGP_C3HHeJ_P0081161 protein_coding protein_coding MGP_C3HHeJ_T0102165.1 MGP_C3HHeJ_G0040129.1 mouse_genomes_project 7 9761419 9762370 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102148.1 MGP_C3HHeJ_G0040112.1 mouse_genomes_project 7 7557815 7558711 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083315.1 MGP_C3HHeJ_G0031896.1 mouse_genomes_project 7 46071631 46081067 - MGP_C3HHeJ_P0083315 protein_coding protein_coding MGP_C3HHeJ_T0083794.1 MGP_C3HHeJ_G0032025.1 mouse_genomes_project 7 60287305 60465655 + MGP_C3HHeJ_P0083794 Atp10a protein_coding protein_coding MGP_C3HHeJ_T0084079.1 MGP_C3HHeJ_G0032082.1 mouse_genomes_project 7 81123423 81131893 - MGP_C3HHeJ_P0084079 Mrpl46 protein_coding protein_coding MGP_C3HHeJ_T0084080.1 MGP_C3HHeJ_G0032082.1 mouse_genomes_project 7 81123787 81132335 - Mrpl46 protein_coding processed_transcript MGP_C3HHeJ_T0082776.1 MGP_C3HHeJ_G0031763.1 mouse_genomes_project 7 30567932 30578372 - MGP_C3HHeJ_P0082776 Scn1b protein_coding protein_coding MGP_C3HHeJ_T0099578.1 MGP_C3HHeJ_G0037772.1 mouse_genomes_project 7 56826479 56826586 - Gm24116 snRNA snRNA MGP_C3HHeJ_T0087463.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148629257 148658070 - MGP_C3HHeJ_P0087463 Nadsyn1 protein_coding protein_coding MGP_C3HHeJ_T0087464.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148629523 148658016 - MGP_C3HHeJ_P0087464 Nadsyn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087465.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148629542 148658071 - MGP_C3HHeJ_P0087465 Nadsyn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087466.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148631522 148632515 - Nadsyn1 protein_coding retained_intron MGP_C3HHeJ_T0087467.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148648045 148658047 - MGP_C3HHeJ_P0087467 Nadsyn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087468.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148648568 148657977 - Nadsyn1 protein_coding retained_intron MGP_C3HHeJ_T0087469.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148648706 148658034 - MGP_C3HHeJ_P0087469 Nadsyn1 protein_coding protein_coding MGP_C3HHeJ_T0087470.1 MGP_C3HHeJ_G0032980.1 mouse_genomes_project 7 148650620 148658078 - Nadsyn1 protein_coding retained_intron MGP_C3HHeJ_T0083550.1 MGP_C3HHeJ_G0031962.1 mouse_genomes_project 7 47078688 47085877 + MGP_C3HHeJ_P0083550 Ccdc114 protein_coding protein_coding MGP_C3HHeJ_T0083551.1 MGP_C3HHeJ_G0031962.1 mouse_genomes_project 7 47078832 47079684 + Ccdc114 protein_coding retained_intron MGP_C3HHeJ_T0083552.1 MGP_C3HHeJ_G0031962.1 mouse_genomes_project 7 47078859 47085883 + MGP_C3HHeJ_P0083552 Ccdc114 protein_coding protein_coding MGP_C3HHeJ_T0083553.1 MGP_C3HHeJ_G0031962.1 mouse_genomes_project 7 47078859 47093041 + MGP_C3HHeJ_P0083553 Ccdc114 protein_coding protein_coding MGP_C3HHeJ_T0083554.1 MGP_C3HHeJ_G0031962.1 mouse_genomes_project 7 47079136 47104867 + MGP_C3HHeJ_P0083554 Ccdc114 protein_coding protein_coding MGP_C3HHeJ_T0085479.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114240090 114286512 + MGP_C3HHeJ_P0085479 Ampd3 protein_coding protein_coding MGP_C3HHeJ_T0085480.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114240223 114264872 + Ampd3 protein_coding processed_transcript MGP_C3HHeJ_T0085481.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114244483 114286998 + MGP_C3HHeJ_P0085481 Ampd3 protein_coding protein_coding MGP_C3HHeJ_T0085482.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114244667 114268311 + Ampd3 protein_coding retained_intron MGP_C3HHeJ_T0085483.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114245551 114262402 + MGP_C3HHeJ_P0085483 Ampd3 protein_coding protein_coding MGP_C3HHeJ_T0085484.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114246123 114262324 + MGP_C3HHeJ_P0085484 Ampd3 protein_coding protein_coding MGP_C3HHeJ_T0085485.1 MGP_C3HHeJ_G0032557.1 mouse_genomes_project 7 114250113 114264917 + MGP_C3HHeJ_P0085485 Ampd3 protein_coding protein_coding MGP_C3HHeJ_T0086312.1 MGP_C3HHeJ_G0032718.1 mouse_genomes_project 7 131097199 131099827 + MGP_C3HHeJ_P0086312 AI467606 protein_coding protein_coding MGP_C3HHeJ_T0086313.1 MGP_C3HHeJ_G0032718.1 mouse_genomes_project 7 131097264 131098834 + MGP_C3HHeJ_P0086313 AI467606 protein_coding protein_coding MGP_C3HHeJ_T0087150.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146009163 146014702 + Tmem80 protein_coding processed_transcript MGP_C3HHeJ_T0087151.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146009312 146018572 + MGP_C3HHeJ_P0087151 Tmem80 protein_coding protein_coding MGP_C3HHeJ_T0087152.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146009312 146017633 + MGP_C3HHeJ_P0087152 Tmem80 protein_coding protein_coding MGP_C3HHeJ_T0087153.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146009554 146018227 + MGP_C3HHeJ_P0087153 Tmem80 protein_coding protein_coding MGP_C3HHeJ_T0087154.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146009554 146018572 + MGP_C3HHeJ_P0087154 Tmem80 protein_coding protein_coding MGP_C3HHeJ_T0087155.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146009584 146014743 + Tmem80 protein_coding processed_transcript MGP_C3HHeJ_T0087156.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146014729 146018229 + MGP_C3HHeJ_P0087156 Tmem80 protein_coding protein_coding MGP_C3HHeJ_T0087157.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146014796 146017483 + MGP_C3HHeJ_P0087157 Tmem80 protein_coding protein_coding MGP_C3HHeJ_T0087158.1 MGP_C3HHeJ_G0032921.1 mouse_genomes_project 7 146015073 146017563 + Tmem80 protein_coding retained_intron MGP_C3HHeJ_T0015646.1 MGP_C3HHeJ_G0013750.1 mouse_genomes_project 7 79581781 79582284 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087032.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145485847 145492621 + MGP_C3HHeJ_P0087032 Ric8a protein_coding protein_coding MGP_C3HHeJ_T0087033.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145486205 145487233 + Ric8a protein_coding retained_intron MGP_C3HHeJ_T0087034.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145486312 145487449 + Ric8a protein_coding processed_transcript MGP_C3HHeJ_T0087035.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145486332 145487433 + Ric8a protein_coding processed_transcript MGP_C3HHeJ_T0087036.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145486589 145491850 + Ric8a protein_coding retained_intron MGP_C3HHeJ_T0087037.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145487052 145488625 + Ric8a protein_coding processed_transcript MGP_C3HHeJ_T0087038.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145489532 145492034 + Ric8a protein_coding retained_intron MGP_C3HHeJ_T0087039.1 MGP_C3HHeJ_G0032893.1 mouse_genomes_project 7 145490063 145491510 + Ric8a protein_coding retained_intron MGP_C3HHeJ_T0081153.1 MGP_C3HHeJ_G0031306.1 mouse_genomes_project 7 3465460 3496672 + MGP_C3HHeJ_P0081153 Smim17 protein_coding protein_coding MGP_C3HHeJ_T0081154.1 MGP_C3HHeJ_G0031306.1 mouse_genomes_project 7 3465493 3475233 + Smim17 protein_coding processed_transcript MGP_C3HHeJ_T0081156.1 MGP_C3HHeJ_G0031306.1 mouse_genomes_project 7 3481943 3499359 + MGP_C3HHeJ_P0081156 Smim17 protein_coding protein_coding MGP_C3HHeJ_T0085870.1 MGP_C3HHeJ_G0032645.1 mouse_genomes_project 7 125831841 125866448 - MGP_C3HHeJ_P0085870 Gga2 protein_coding protein_coding MGP_C3HHeJ_T0085871.1 MGP_C3HHeJ_G0032645.1 mouse_genomes_project 7 125831841 125866393 - MGP_C3HHeJ_P0085871 Gga2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085872.1 MGP_C3HHeJ_G0032645.1 mouse_genomes_project 7 125833884 125847709 - Gga2 protein_coding retained_intron MGP_C3HHeJ_T0085873.1 MGP_C3HHeJ_G0032645.1 mouse_genomes_project 7 125841723 125844169 - Gga2 protein_coding retained_intron MGP_C3HHeJ_T0085874.1 MGP_C3HHeJ_G0032645.1 mouse_genomes_project 7 125849964 125866406 - Gga2 protein_coding retained_intron MGP_C3HHeJ_T0085875.1 MGP_C3HHeJ_G0032645.1 mouse_genomes_project 7 125855640 125866413 - Gga2 protein_coding retained_intron MGP_C3HHeJ_T0087069.1 MGP_C3HHeJ_G0032899.1 mouse_genomes_project 7 145580561 145581838 - MGP_C3HHeJ_P0087069 Ifitm5 protein_coding protein_coding MGP_C3HHeJ_T0083156.1 MGP_C3HHeJ_G0031866.1 mouse_genomes_project 7 45401489 45417209 - MGP_C3HHeJ_P0083156 1700008O03Rik protein_coding protein_coding MGP_C3HHeJ_T0083157.1 MGP_C3HHeJ_G0031866.1 mouse_genomes_project 7 45401545 45416693 - 1700008O03Rik protein_coding retained_intron MGP_C3HHeJ_T0083158.1 MGP_C3HHeJ_G0031866.1 mouse_genomes_project 7 45401683 45415779 - MGP_C3HHeJ_P0083158 1700008O03Rik protein_coding protein_coding MGP_C3HHeJ_T0083159.1 MGP_C3HHeJ_G0031866.1 mouse_genomes_project 7 45404940 45428460 - 1700008O03Rik protein_coding processed_transcript MGP_C3HHeJ_T0083160.1 MGP_C3HHeJ_G0031866.1 mouse_genomes_project 7 45421712 45428596 - 1700008O03Rik protein_coding processed_transcript MGP_C3HHeJ_T0081505.1 MGP_C3HHeJ_G0031443.1 mouse_genomes_project 7 16779995 17116512 - MGP_C3HHeJ_P0081505 protein_coding protein_coding MGP_C3HHeJ_T0005141.1 MGP_C3HHeJ_G0004367.1 mouse_genomes_project 7 46679831 46680906 - antisense antisense MGP_C3HHeJ_T0005087.1 MGP_C3HHeJ_G0004325.1 mouse_genomes_project 7 17627997 17629317 + 1700058P15Rik antisense antisense MGP_C3HHeJ_T0081898.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23887025 23940950 - MGP_C3HHeJ_P0081898 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081899.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23894464 23940950 - MGP_C3HHeJ_P0081899 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081900.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23894508 23940939 - MGP_C3HHeJ_P0081900 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081901.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23894508 23940950 - MGP_C3HHeJ_P0081901 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081902.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23894665 23930293 - MGP_C3HHeJ_P0081902 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081903.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23895236 23940974 - MGP_C3HHeJ_P0081903 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081904.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23904266 23929422 - MGP_C3HHeJ_P0081904 Pou2f2 protein_coding protein_coding MGP_C3HHeJ_T0081905.1 MGP_C3HHeJ_G0031559.1 mouse_genomes_project 7 23929181 23969714 - Pou2f2 protein_coding retained_intron MGP_C3HHeJ_T0015678.1 MGP_C3HHeJ_G0013782.1 mouse_genomes_project 7 101396629 101397386 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085380.1 MGP_C3HHeJ_G0032521.1 mouse_genomes_project 7 112016396 112017404 + MGP_C3HHeJ_P0085380 Olfr506 protein_coding protein_coding MGP_C3HHeJ_T0086006.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130039571 130089660 - MGP_C3HHeJ_P0086006 Xpo6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086007.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041223 130143734 - MGP_C3HHeJ_P0086007 Xpo6 protein_coding protein_coding MGP_C3HHeJ_T0086008.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041224 130143641 - MGP_C3HHeJ_P0086008 Xpo6 protein_coding protein_coding MGP_C3HHeJ_T0086009.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041229 130049545 - Xpo6 protein_coding retained_intron MGP_C3HHeJ_T0086010.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041229 130100729 - Xpo6 protein_coding processed_transcript MGP_C3HHeJ_T0086011.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041229 130044302 - MGP_C3HHeJ_P0086011 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086012.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041242 130046660 - MGP_C3HHeJ_P0086012 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086013.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041577 130044515 - Xpo6 protein_coding retained_intron MGP_C3HHeJ_T0086014.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130041854 130046623 - MGP_C3HHeJ_P0086014 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086015.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130044250 130053087 - MGP_C3HHeJ_P0086015 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086016.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130048014 130053019 - MGP_C3HHeJ_P0086016 Xpo6 protein_coding protein_coding MGP_C3HHeJ_T0086017.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130053092 130080756 - MGP_C3HHeJ_P0086017 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086018.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130058611 130143655 - Xpo6 protein_coding retained_intron MGP_C3HHeJ_T0086019.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130068357 130093169 - MGP_C3HHeJ_P0086019 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086020.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130080736 130100870 - MGP_C3HHeJ_P0086020 Xpo6 protein_coding protein_coding MGP_C3HHeJ_T0086021.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130089429 130100878 - Xpo6 protein_coding processed_transcript MGP_C3HHeJ_T0086022.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130091821 130143575 - Xpo6 protein_coding processed_transcript MGP_C3HHeJ_T0086023.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130092390 130143134 - MGP_C3HHeJ_P0086023 Xpo6 protein_coding protein_coding MGP_C3HHeJ_T0086024.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130100865 130143161 - MGP_C3HHeJ_P0086024 Xpo6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086025.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130109125 130121359 - Xpo6 protein_coding processed_transcript MGP_C3HHeJ_T0086026.1 MGP_C3HHeJ_G0032671.1 mouse_genomes_project 7 130119495 130126654 - Xpo6 protein_coding retained_intron MGP_C3HHeJ_T0098546.1 MGP_C3HHeJ_G0036746.1 mouse_genomes_project 7 133845767 133872620 + Gm33248 sense_intronic sense_intronic MGP_C3HHeJ_T0099576.1 MGP_C3HHeJ_G0037770.1 mouse_genomes_project 7 53640244 53640400 - Gm22211 snRNA snRNA MGP_C3HHeJ_T0008763.1 MGP_C3HHeJ_G0007074.1 mouse_genomes_project 7 37576648 37579855 - lincRNA lincRNA MGP_C3HHeJ_T0081155.1 MGP_C3HHeJ_G0031307.1 mouse_genomes_project 7 3476950 3510003 + MGP_C3HHeJ_P0081155 Gm20715 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081215.1 MGP_C3HHeJ_G0031348.1 mouse_genomes_project 7 10063281 10103172 + MGP_C3HHeJ_P0081215 2900092C05Rik protein_coding protein_coding MGP_C3HHeJ_T0082616.1 MGP_C3HHeJ_G0031733.1 mouse_genomes_project 7 29961043 29963579 + MGP_C3HHeJ_P0082616 Igflr1 protein_coding protein_coding MGP_C3HHeJ_T0082617.1 MGP_C3HHeJ_G0031733.1 mouse_genomes_project 7 29961696 29963576 + MGP_C3HHeJ_P0082617 Igflr1 protein_coding protein_coding MGP_C3HHeJ_T0084136.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81820891 81840779 - MGP_C3HHeJ_P0084136 Polg protein_coding protein_coding MGP_C3HHeJ_T0084137.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824042 81826299 - MGP_C3HHeJ_P0084137 Polg protein_coding protein_coding MGP_C3HHeJ_T0084138.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824043 81829743 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084139.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824043 81840604 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084140.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824043 81825279 - MGP_C3HHeJ_P0084140 Polg protein_coding protein_coding MGP_C3HHeJ_T0084141.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824224 81840597 - MGP_C3HHeJ_P0084141 Polg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084142.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824238 81840615 - MGP_C3HHeJ_P0084142 Polg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084143.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81824827 81826745 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084144.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81826251 81826587 - MGP_C3HHeJ_P0084144 Polg protein_coding protein_coding MGP_C3HHeJ_T0084145.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81826264 81828449 - MGP_C3HHeJ_P0084145 Polg protein_coding protein_coding MGP_C3HHeJ_T0084146.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81826594 81829003 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084147.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81828608 81830728 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084148.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81829193 81830057 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084149.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81830148 81834113 - MGP_C3HHeJ_P0084149 Polg protein_coding protein_coding MGP_C3HHeJ_T0084150.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81830732 81834468 - MGP_C3HHeJ_P0084150 Polg protein_coding protein_coding MGP_C3HHeJ_T0084151.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81834193 81836459 - Polg protein_coding processed_transcript MGP_C3HHeJ_T0084152.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81838332 81840611 - Polg protein_coding retained_intron MGP_C3HHeJ_T0084153.1 MGP_C3HHeJ_G0032093.1 mouse_genomes_project 7 81839311 81840487 - MGP_C3HHeJ_P0084153 Polg protein_coding protein_coding MGP_C3HHeJ_T0100838.1 MGP_C3HHeJ_G0039032.1 mouse_genomes_project 7 72026208 72026337 - Gm24120 snoRNA snoRNA MGP_C3HHeJ_T0087143.1 MGP_C3HHeJ_G0032917.1 mouse_genomes_project 7 145948059 145955761 - MGP_C3HHeJ_P0087143 Cdhr5 protein_coding protein_coding MGP_C3HHeJ_T0087144.1 MGP_C3HHeJ_G0032917.1 mouse_genomes_project 7 145948059 145955761 - MGP_C3HHeJ_P0087144 Cdhr5 protein_coding protein_coding MGP_C3HHeJ_T0005181.1 MGP_C3HHeJ_G0004394.1 mouse_genomes_project 7 99215881 99218364 - Gm15412 antisense antisense MGP_C3HHeJ_T0085335.1 MGP_C3HHeJ_G0032483.1 mouse_genomes_project 7 110382533 110383508 + MGP_C3HHeJ_P0085335 Olfr713 protein_coding protein_coding MGP_C3HHeJ_T0083662.1 MGP_C3HHeJ_G0031997.1 mouse_genomes_project 7 50065730 50066739 - MGP_C3HHeJ_P0083662 Mrgprb3 protein_coding protein_coding MGP_C3HHeJ_T0015655.1 MGP_C3HHeJ_G0013759.1 mouse_genomes_project 7 85516948 85517266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099608.1 MGP_C3HHeJ_G0037802.1 mouse_genomes_project 7 126123118 126123225 + Gm23614 snRNA snRNA MGP_C3HHeJ_T0008891.1 MGP_C3HHeJ_G0007162.1 mouse_genomes_project 7 102233477 102241488 - Gm26705 lincRNA lincRNA MGP_C3HHeJ_T0099623.1 MGP_C3HHeJ_G0037817.1 mouse_genomes_project 7 147203948 147204056 + Gm26143 snRNA snRNA MGP_C3HHeJ_T0086985.1 MGP_C3HHeJ_G0032862.1 mouse_genomes_project 7 144724912 144733341 + MGP_C3HHeJ_P0086985 protein_coding protein_coding MGP_C3HHeJ_T0086986.1 MGP_C3HHeJ_G0032862.1 mouse_genomes_project 7 144725563 144733160 + MGP_C3HHeJ_P0086986 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085317.1 MGP_C3HHeJ_G0032466.1 mouse_genomes_project 7 110045219 110047833 - MGP_C3HHeJ_P0085317 protein_coding protein_coding MGP_C3HHeJ_T0002188.1 MGP_C3HHeJ_G0002109.1 mouse_genomes_project 7 45429175 45431930 + TEC TEC MGP_C3HHeJ_T0083984.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69602994 69631269 + Ttc23 protein_coding retained_intron MGP_C3HHeJ_T0083985.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69602994 69690174 + MGP_C3HHeJ_P0083985 Ttc23 protein_coding protein_coding MGP_C3HHeJ_T0083986.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69603009 69690176 + MGP_C3HHeJ_P0083986 Ttc23 protein_coding protein_coding MGP_C3HHeJ_T0083987.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69603038 69604780 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0083988.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69603044 69618057 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0083989.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69610789 69640685 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0083990.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69611059 69690173 + MGP_C3HHeJ_P0083990 Ttc23 protein_coding protein_coding MGP_C3HHeJ_T0083991.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69624388 69628680 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0083992.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69628698 69659628 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0083993.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69640658 69689652 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0083994.1 MGP_C3HHeJ_G0032064.1 mouse_genomes_project 7 69688860 69689614 + Ttc23 protein_coding processed_transcript MGP_C3HHeJ_T0085098.1 MGP_C3HHeJ_G0032366.1 mouse_genomes_project 7 106859101 106859701 - MGP_C3HHeJ_P0085098 protein_coding protein_coding MGP_C3HHeJ_T0083449.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46650072 46678862 + MGP_C3HHeJ_P0083449 Plekha4 protein_coding protein_coding MGP_C3HHeJ_T0083450.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46650072 46683521 + MGP_C3HHeJ_P0083450 Plekha4 protein_coding protein_coding MGP_C3HHeJ_T0083451.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46654920 46683521 + MGP_C3HHeJ_P0083451 Plekha4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083452.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46654967 46657268 + MGP_C3HHeJ_P0083452 Plekha4 protein_coding protein_coding MGP_C3HHeJ_T0083453.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46655033 46683521 + MGP_C3HHeJ_P0083453 Plekha4 protein_coding protein_coding MGP_C3HHeJ_T0083454.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46655499 46683324 + MGP_C3HHeJ_P0083454 Plekha4 protein_coding protein_coding MGP_C3HHeJ_T0083455.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46679133 46683521 + Plekha4 protein_coding processed_transcript MGP_C3HHeJ_T0083456.1 MGP_C3HHeJ_G0031935.1 mouse_genomes_project 7 46681981 46683521 + Plekha4 protein_coding retained_intron MGP_C3HHeJ_T0083253.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45814774 45845108 + MGP_C3HHeJ_P0083253 Vrk3 protein_coding protein_coding MGP_C3HHeJ_T0083254.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45814846 45824467 + Vrk3 protein_coding retained_intron MGP_C3HHeJ_T0083255.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45814945 45826131 + MGP_C3HHeJ_P0083255 Vrk3 protein_coding protein_coding MGP_C3HHeJ_T0083256.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45814997 45845108 + MGP_C3HHeJ_P0083256 Vrk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083257.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45815007 45829417 + MGP_C3HHeJ_P0083257 Vrk3 protein_coding protein_coding MGP_C3HHeJ_T0083258.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45815008 45831165 + MGP_C3HHeJ_P0083258 Vrk3 protein_coding protein_coding MGP_C3HHeJ_T0083259.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45815304 45820318 + MGP_C3HHeJ_P0083259 Vrk3 protein_coding protein_coding MGP_C3HHeJ_T0083260.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45818474 45825769 + Vrk3 protein_coding processed_transcript MGP_C3HHeJ_T0083261.1 MGP_C3HHeJ_G0031884.1 mouse_genomes_project 7 45818476 45825769 + Vrk3 protein_coding processed_transcript MGP_C3HHeJ_T0082840.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34444925 34500772 - MGP_C3HHeJ_P0082840 Lsm14a protein_coding protein_coding MGP_C3HHeJ_T0082841.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34444942 34455155 - MGP_C3HHeJ_P0082841 Lsm14a protein_coding protein_coding MGP_C3HHeJ_T0082842.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34445994 34504400 - MGP_C3HHeJ_P0082842 Lsm14a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082843.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34446217 34480139 - MGP_C3HHeJ_P0082843 Lsm14a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082844.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34451075 34455216 - Lsm14a protein_coding retained_intron MGP_C3HHeJ_T0082845.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34455142 34500564 - MGP_C3HHeJ_P0082845 Lsm14a protein_coding protein_coding MGP_C3HHeJ_T0082846.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34455473 34500165 - MGP_C3HHeJ_P0082846 Lsm14a protein_coding protein_coding MGP_C3HHeJ_T0082847.1 MGP_C3HHeJ_G0031781.1 mouse_genomes_project 7 34497666 34500246 - Lsm14a protein_coding retained_intron MGP_C3HHeJ_T0008839.1 MGP_C3HHeJ_G0007131.1 mouse_genomes_project 7 75972759 76007639 - Gm10619 lincRNA lincRNA MGP_C3HHeJ_T0008840.1 MGP_C3HHeJ_G0007131.1 mouse_genomes_project 7 75999429 76007711 - Gm10619 lincRNA lincRNA MGP_C3HHeJ_T0080899.1 MGP_C3HHeJ_G0031237.1 mouse_genomes_project 7 644335 652074 - MGP_C3HHeJ_P0080899 protein_coding protein_coding MGP_C3HHeJ_T0100823.1 MGP_C3HHeJ_G0039017.1 mouse_genomes_project 7 46225992 46226075 - Snord32a snoRNA snoRNA MGP_C3HHeJ_T0084484.1 MGP_C3HHeJ_G0032175.1 mouse_genomes_project 7 88985743 88986745 - MGP_C3HHeJ_P0084484 Olfr304 protein_coding protein_coding MGP_C3HHeJ_T0085050.1 MGP_C3HHeJ_G0032321.1 mouse_genomes_project 7 105882322 105883270 + MGP_C3HHeJ_P0085050 Olfr555 protein_coding protein_coding MGP_C3HHeJ_T0010734.1 MGP_C3HHeJ_G0008867.1 mouse_genomes_project 7 112700 112783 + Mir290a miRNA miRNA MGP_C3HHeJ_T0002173.1 MGP_C3HHeJ_G0002094.1 mouse_genomes_project 7 36967103 36969486 + TEC TEC MGP_C3HHeJ_T0081101.1 MGP_C3HHeJ_G0031285.1 mouse_genomes_project 7 2073487 2077542 + MGP_C3HHeJ_P0081101 Ccdc106 protein_coding protein_coding MGP_C3HHeJ_T0008934.1 MGP_C3HHeJ_G0007188.1 mouse_genomes_project 7 130306517 130309743 - Gm45142 lincRNA lincRNA MGP_C3HHeJ_T0008935.1 MGP_C3HHeJ_G0007188.1 mouse_genomes_project 7 130308768 130309765 - Gm45142 lincRNA lincRNA MGP_C3HHeJ_T0083919.1 MGP_C3HHeJ_G0032052.1 mouse_genomes_project 7 67991568 68002180 + MGP_C3HHeJ_P0083919 Vimp protein_coding protein_coding MGP_C3HHeJ_T0083920.1 MGP_C3HHeJ_G0032052.1 mouse_genomes_project 7 67991596 68000226 + Vimp protein_coding retained_intron MGP_C3HHeJ_T0083921.1 MGP_C3HHeJ_G0032052.1 mouse_genomes_project 7 67991597 68002178 + MGP_C3HHeJ_P0083921 Vimp protein_coding protein_coding MGP_C3HHeJ_T0083922.1 MGP_C3HHeJ_G0032052.1 mouse_genomes_project 7 67991606 68001897 + MGP_C3HHeJ_P0083922 Vimp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083923.1 MGP_C3HHeJ_G0032052.1 mouse_genomes_project 7 67991633 68002187 + MGP_C3HHeJ_P0083923 Vimp protein_coding protein_coding MGP_C3HHeJ_T0086210.1 MGP_C3HHeJ_G0032700.1 mouse_genomes_project 7 130829307 130830336 - MGP_C3HHeJ_P0086210 4930451I11Rik protein_coding protein_coding MGP_C3HHeJ_T0086211.1 MGP_C3HHeJ_G0032700.1 mouse_genomes_project 7 130829308 130830479 - 4930451I11Rik protein_coding processed_transcript MGP_C3HHeJ_T0086212.1 MGP_C3HHeJ_G0032700.1 mouse_genomes_project 7 130829316 130830312 - MGP_C3HHeJ_P0086212 4930451I11Rik protein_coding protein_coding MGP_C3HHeJ_T0010808.1 MGP_C3HHeJ_G0008941.1 mouse_genomes_project 7 66836025 66836103 - Gm25249 miRNA miRNA MGP_C3HHeJ_T0083691.1 MGP_C3HHeJ_G0032002.1 mouse_genomes_project 7 51097317 51102645 - MGP_C3HHeJ_P0083691 Dbx1 protein_coding protein_coding MGP_C3HHeJ_T0005117.1 MGP_C3HHeJ_G0004350.1 mouse_genomes_project 7 30386733 30391694 + antisense antisense MGP_C3HHeJ_T0102230.1 MGP_C3HHeJ_G0040193.1 mouse_genomes_project 7 44998289 45000326 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083534.1 MGP_C3HHeJ_G0031958.1 mouse_genomes_project 7 47026870 47028350 + Kdelr1 protein_coding processed_transcript MGP_C3HHeJ_T0083535.1 MGP_C3HHeJ_G0031958.1 mouse_genomes_project 7 47026996 47036971 + MGP_C3HHeJ_P0083535 Kdelr1 protein_coding protein_coding MGP_C3HHeJ_T0083536.1 MGP_C3HHeJ_G0031958.1 mouse_genomes_project 7 47035447 47037313 + Kdelr1 protein_coding processed_transcript MGP_C3HHeJ_T0084475.1 MGP_C3HHeJ_G0032167.1 mouse_genomes_project 7 87590250 87601463 - MGP_C3HHeJ_P0084475 Vmn2r66 protein_coding protein_coding MGP_C3HHeJ_T0081177.1 MGP_C3HHeJ_G0031320.1 mouse_genomes_project 7 4234085 4240008 - MGP_C3HHeJ_P0081177 Zfp773 protein_coding protein_coding MGP_C3HHeJ_T0085338.1 MGP_C3HHeJ_G0032486.1 mouse_genomes_project 7 110442848 110443978 - MGP_C3HHeJ_P0085338 protein_coding protein_coding MGP_C3HHeJ_T0086130.1 MGP_C3HHeJ_G0032689.1 mouse_genomes_project 7 130658094 130661767 - MGP_C3HHeJ_P0086130 Sult1a1 protein_coding protein_coding MGP_C3HHeJ_T0086131.1 MGP_C3HHeJ_G0032689.1 mouse_genomes_project 7 130658099 130661692 - MGP_C3HHeJ_P0086131 Sult1a1 protein_coding protein_coding MGP_C3HHeJ_T0086132.1 MGP_C3HHeJ_G0032689.1 mouse_genomes_project 7 130658100 130661692 - MGP_C3HHeJ_P0086132 Sult1a1 protein_coding protein_coding MGP_C3HHeJ_T0086133.1 MGP_C3HHeJ_G0032689.1 mouse_genomes_project 7 130659497 130661710 - MGP_C3HHeJ_P0086133 Sult1a1 protein_coding protein_coding MGP_C3HHeJ_T0008885.1 MGP_C3HHeJ_G0007157.1 mouse_genomes_project 7 96813746 97139186 + lincRNA lincRNA MGP_C3HHeJ_T0008886.1 MGP_C3HHeJ_G0007157.1 mouse_genomes_project 7 96813807 97528114 + lincRNA lincRNA MGP_C3HHeJ_T0087089.1 MGP_C3HHeJ_G0032908.1 mouse_genomes_project 7 145756184 145773545 - MGP_C3HHeJ_P0087089 Ano9 protein_coding protein_coding MGP_C3HHeJ_T0083858.1 MGP_C3HHeJ_G0032040.1 mouse_genomes_project 7 66223237 66250738 - MGP_C3HHeJ_P0083858 Fan1 protein_coding protein_coding MGP_C3HHeJ_T0083859.1 MGP_C3HHeJ_G0032040.1 mouse_genomes_project 7 66238152 66250031 - Fan1 protein_coding retained_intron MGP_C3HHeJ_T0083860.1 MGP_C3HHeJ_G0032040.1 mouse_genomes_project 7 66246813 66250753 - Fan1 protein_coding retained_intron MGP_C3HHeJ_T0083861.1 MGP_C3HHeJ_G0032040.1 mouse_genomes_project 7 66247572 66250699 - Fan1 protein_coding retained_intron MGP_C3HHeJ_T0008794.1 MGP_C3HHeJ_G0007096.1 mouse_genomes_project 7 65834779 65840131 + Gm45052 lincRNA lincRNA MGP_C3HHeJ_T0084379.1 MGP_C3HHeJ_G0032134.1 mouse_genomes_project 7 84001191 84005201 - MGP_C3HHeJ_P0084379 BC048679 protein_coding protein_coding MGP_C3HHeJ_T0084380.1 MGP_C3HHeJ_G0032134.1 mouse_genomes_project 7 84001191 84005201 - MGP_C3HHeJ_P0084380 BC048679 protein_coding protein_coding MGP_C3HHeJ_T0084930.1 MGP_C3HHeJ_G0032288.1 mouse_genomes_project 7 104978318 104982742 + MGP_C3HHeJ_P0084930 Phox2a protein_coding protein_coding MGP_C3HHeJ_T0081759.1 MGP_C3HHeJ_G0031526.1 mouse_genomes_project 7 22949477 22956991 + MGP_C3HHeJ_P0081759 Zfp108 protein_coding protein_coding MGP_C3HHeJ_T0081760.1 MGP_C3HHeJ_G0031526.1 mouse_genomes_project 7 22949691 22957059 + MGP_C3HHeJ_P0081760 Zfp108 protein_coding protein_coding MGP_C3HHeJ_T0081761.1 MGP_C3HHeJ_G0031526.1 mouse_genomes_project 7 22952327 22956530 + MGP_C3HHeJ_P0081761 Zfp108 protein_coding protein_coding MGP_C3HHeJ_T0087244.1 MGP_C3HHeJ_G0032932.1 mouse_genomes_project 7 146156268 146159479 - MGP_C3HHeJ_P0087244 Polr2l protein_coding protein_coding MGP_C3HHeJ_T0100822.1 MGP_C3HHeJ_G0039016.1 mouse_genomes_project 7 46225474 46225558 - Snord33 snoRNA snoRNA MGP_C3HHeJ_T0008798.1 MGP_C3HHeJ_G0007099.1 mouse_genomes_project 7 65946934 65953336 + Gm20670 lincRNA lincRNA MGP_C3HHeJ_T0086961.1 MGP_C3HHeJ_G0032857.1 mouse_genomes_project 7 144640701 144643634 - MGP_C3HHeJ_P0086961 Msx3 protein_coding protein_coding MGP_C3HHeJ_T0086962.1 MGP_C3HHeJ_G0032857.1 mouse_genomes_project 7 144640918 144643633 - MGP_C3HHeJ_P0086962 Msx3 protein_coding protein_coding MGP_C3HHeJ_T0099604.1 MGP_C3HHeJ_G0037798.1 mouse_genomes_project 7 120323259 120323366 - Gm25423 snRNA snRNA MGP_C3HHeJ_T0015640.1 MGP_C3HHeJ_G0013744.1 mouse_genomes_project 7 76937955 76938186 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010820.1 MGP_C3HHeJ_G0008953.1 mouse_genomes_project 7 103976387 103976491 - Mir3102 miRNA miRNA MGP_C3HHeJ_T0085104.1 MGP_C3HHeJ_G0032372.1 mouse_genomes_project 7 107021695 107022761 - MGP_C3HHeJ_P0085104 Olfr630 protein_coding protein_coding MGP_C3HHeJ_T0100869.1 MGP_C3HHeJ_G0039063.1 mouse_genomes_project 7 146857451 146857545 + Gm25370 snoRNA snoRNA MGP_C3HHeJ_T0081242.1 MGP_C3HHeJ_G0031358.1 mouse_genomes_project 7 10539409 10548329 + MGP_C3HHeJ_P0081242 Zfp324 protein_coding protein_coding MGP_C3HHeJ_T0081243.1 MGP_C3HHeJ_G0031358.1 mouse_genomes_project 7 10539416 10548743 + MGP_C3HHeJ_P0081243 Zfp324 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081244.1 MGP_C3HHeJ_G0031358.1 mouse_genomes_project 7 10539438 10548306 + MGP_C3HHeJ_P0081244 Zfp324 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084296.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82892624 82902909 - MGP_C3HHeJ_P0084296 Blm protein_coding protein_coding MGP_C3HHeJ_T0084297.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82893119 82975676 - MGP_C3HHeJ_P0084297 Blm protein_coding protein_coding MGP_C3HHeJ_T0084298.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82893218 82975555 - MGP_C3HHeJ_P0084298 Blm protein_coding protein_coding MGP_C3HHeJ_T0084299.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82893364 82895498 - Blm protein_coding processed_transcript MGP_C3HHeJ_T0084300.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82893519 82897379 - Blm protein_coding retained_intron MGP_C3HHeJ_T0084301.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82893547 82898950 - MGP_C3HHeJ_P0084301 Blm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084302.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82902878 82905591 - MGP_C3HHeJ_P0084302 Blm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084303.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82907339 82953979 - Blm protein_coding retained_intron MGP_C3HHeJ_T0084304.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82907365 82909873 - Blm protein_coding retained_intron MGP_C3HHeJ_T0084305.1 MGP_C3HHeJ_G0032120.1 mouse_genomes_project 7 82912218 82920404 - Blm protein_coding retained_intron MGP_C3HHeJ_T0085112.1 MGP_C3HHeJ_G0032378.1 mouse_genomes_project 7 107128201 107129449 - MGP_C3HHeJ_P0085112 Hbb-bh2 protein_coding protein_coding MGP_C3HHeJ_T0083002.1 MGP_C3HHeJ_G0031812.1 mouse_genomes_project 7 42074229 42098118 - MGP_C3HHeJ_P0083002 Vmn2r57 protein_coding protein_coding MGP_C3HHeJ_T0010823.1 MGP_C3HHeJ_G0008956.1 mouse_genomes_project 7 112958741 112958861 + miRNA miRNA MGP_C3HHeJ_T0085523.1 MGP_C3HHeJ_G0032563.1 mouse_genomes_project 7 114961320 115275730 - MGP_C3HHeJ_P0085523 Galnt18 protein_coding protein_coding MGP_C3HHeJ_T0085524.1 MGP_C3HHeJ_G0032563.1 mouse_genomes_project 7 114961320 115275730 - MGP_C3HHeJ_P0085524 Galnt18 protein_coding protein_coding MGP_C3HHeJ_T0085319.1 MGP_C3HHeJ_G0032468.1 mouse_genomes_project 7 110082888 110083824 - MGP_C3HHeJ_P0085319 Olfr698 protein_coding protein_coding MGP_C3HHeJ_T0085321.1 MGP_C3HHeJ_G0032470.1 mouse_genomes_project 7 110143566 110144517 - MGP_C3HHeJ_P0085321 Olfr700 protein_coding protein_coding MGP_C3HHeJ_T0015726.1 MGP_C3HHeJ_G0013830.1 mouse_genomes_project 7 132823603 132823887 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002211.1 MGP_C3HHeJ_G0002132.1 mouse_genomes_project 7 74781344 74781844 + TEC TEC MGP_C3HHeJ_T0082834.1 MGP_C3HHeJ_G0031780.1 mouse_genomes_project 7 34346962 34347418 + MGP_C3HHeJ_P0082834 Gm6096 protein_coding protein_coding MGP_C3HHeJ_T0008818.1 MGP_C3HHeJ_G0007112.1 mouse_genomes_project 7 73321402 73329792 + 6030442E23Rik lincRNA lincRNA MGP_C3HHeJ_T0099600.1 MGP_C3HHeJ_G0037794.1 mouse_genomes_project 7 113225381 113225488 - Gm22822 snRNA snRNA MGP_C3HHeJ_T0086339.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131232421 131233096 - Sept1 protein_coding retained_intron MGP_C3HHeJ_T0086340.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131232728 131236325 - MGP_C3HHeJ_P0086340 Sept1 protein_coding protein_coding MGP_C3HHeJ_T0086341.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131232741 131236387 - MGP_C3HHeJ_P0086341 Sept1 protein_coding protein_coding MGP_C3HHeJ_T0086342.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131232936 131234955 - Sept1 protein_coding retained_intron MGP_C3HHeJ_T0086343.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131233855 131236306 - MGP_C3HHeJ_P0086343 Sept1 protein_coding protein_coding MGP_C3HHeJ_T0086344.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131234643 131252037 - MGP_C3HHeJ_P0086344 Sept1 protein_coding protein_coding MGP_C3HHeJ_T0086345.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131234680 131236342 - Sept1 protein_coding retained_intron MGP_C3HHeJ_T0086346.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131234887 131236147 - Sept1 protein_coding processed_transcript MGP_C3HHeJ_T0086347.1 MGP_C3HHeJ_G0032724.1 mouse_genomes_project 7 131251808 131252521 - Sept1 protein_coding retained_intron MGP_C3HHeJ_T0085130.1 MGP_C3HHeJ_G0032396.1 mouse_genomes_project 7 107373612 107374560 - MGP_C3HHeJ_P0085130 Olfr645 protein_coding protein_coding MGP_C3HHeJ_T0085262.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108931753 108935328 + MGP_C3HHeJ_P0085262 protein_coding protein_coding MGP_C3HHeJ_T0085263.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932145 108933541 + MGP_C3HHeJ_P0085263 protein_coding protein_coding MGP_C3HHeJ_T0085264.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932249 108943719 + MGP_C3HHeJ_P0085264 protein_coding protein_coding MGP_C3HHeJ_T0085266.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932261 108933483 + protein_coding retained_intron MGP_C3HHeJ_T0085267.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932261 108944248 + MGP_C3HHeJ_P0085267 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085268.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932264 108933537 + MGP_C3HHeJ_P0085268 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085269.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932267 108948317 + MGP_C3HHeJ_P0085269 protein_coding protein_coding MGP_C3HHeJ_T0085270.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932268 108935323 + MGP_C3HHeJ_P0085270 protein_coding protein_coding MGP_C3HHeJ_T0085272.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932286 108933447 + protein_coding processed_transcript MGP_C3HHeJ_T0085273.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932287 108933523 + MGP_C3HHeJ_P0085273 protein_coding protein_coding MGP_C3HHeJ_T0085274.1 MGP_C3HHeJ_G0032454.1 mouse_genomes_project 7 108932368 108932982 + protein_coding retained_intron MGP_C3HHeJ_T0099588.1 MGP_C3HHeJ_G0037782.1 mouse_genomes_project 7 86760596 86760754 + Gm22177 snRNA snRNA MGP_C3HHeJ_T0084747.1 MGP_C3HHeJ_G0032249.1 mouse_genomes_project 7 102355684 102433202 + MGP_C3HHeJ_P0084747 Gdpd5 protein_coding protein_coding MGP_C3HHeJ_T0084748.1 MGP_C3HHeJ_G0032249.1 mouse_genomes_project 7 102355842 102434063 + MGP_C3HHeJ_P0084748 Gdpd5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084386.1 MGP_C3HHeJ_G0032138.1 mouse_genomes_project 7 84280225 84286433 + MGP_C3HHeJ_P0084386 protein_coding protein_coding MGP_C3HHeJ_T0084388.1 MGP_C3HHeJ_G0032138.1 mouse_genomes_project 7 84280350 84284963 + MGP_C3HHeJ_P0084388 protein_coding protein_coding MGP_C3HHeJ_T0102188.1 MGP_C3HHeJ_G0040152.1 mouse_genomes_project 7 12644860 12645125 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010743.1 MGP_C3HHeJ_G0008876.1 mouse_genomes_project 7 329826 329917 + Gm23450 miRNA miRNA MGP_C3HHeJ_T0084978.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105189691 105238960 - MGP_C3HHeJ_P0084978 Rnf121 protein_coding protein_coding MGP_C3HHeJ_T0084979.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105189706 105239271 - MGP_C3HHeJ_P0084979 Rnf121 protein_coding protein_coding MGP_C3HHeJ_T0084980.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105190686 105234481 - MGP_C3HHeJ_P0084980 Rnf121 protein_coding protein_coding MGP_C3HHeJ_T0084981.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105190987 105195236 - Rnf121 protein_coding retained_intron MGP_C3HHeJ_T0084982.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105199601 105238919 - MGP_C3HHeJ_P0084982 Rnf121 protein_coding protein_coding MGP_C3HHeJ_T0084983.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105205926 105238960 - Rnf121 protein_coding processed_transcript MGP_C3HHeJ_T0084984.1 MGP_C3HHeJ_G0032298.1 mouse_genomes_project 7 105210161 105238846 - MGP_C3HHeJ_P0084984 Rnf121 protein_coding protein_coding MGP_C3HHeJ_T0085384.1 MGP_C3HHeJ_G0032525.1 mouse_genomes_project 7 112074861 112075806 + MGP_C3HHeJ_P0085384 Olfr510 protein_coding protein_coding MGP_C3HHeJ_T0081646.1 MGP_C3HHeJ_G0031484.1 mouse_genomes_project 7 17892863 17901215 + MGP_C3HHeJ_P0081646 Trappc6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081647.1 MGP_C3HHeJ_G0031484.1 mouse_genomes_project 7 17892903 17901222 + MGP_C3HHeJ_P0081647 Trappc6a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081648.1 MGP_C3HHeJ_G0031484.1 mouse_genomes_project 7 17892905 17901222 + MGP_C3HHeJ_P0081648 Trappc6a protein_coding protein_coding MGP_C3HHeJ_T0081649.1 MGP_C3HHeJ_G0031484.1 mouse_genomes_project 7 17892919 17901218 + MGP_C3HHeJ_P0081649 Trappc6a protein_coding protein_coding MGP_C3HHeJ_T0081650.1 MGP_C3HHeJ_G0031484.1 mouse_genomes_project 7 17892923 17900395 + Trappc6a protein_coding retained_intron MGP_C3HHeJ_T0081651.1 MGP_C3HHeJ_G0031484.1 mouse_genomes_project 7 17899496 17901213 + MGP_C3HHeJ_P0081651 Trappc6a protein_coding protein_coding MGP_C3HHeJ_T0085303.1 MGP_C3HHeJ_G0032460.1 mouse_genomes_project 7 109047075 109082132 - MGP_C3HHeJ_P0085303 Dchs1 protein_coding protein_coding MGP_C3HHeJ_T0085304.1 MGP_C3HHeJ_G0032460.1 mouse_genomes_project 7 109047076 109082227 - MGP_C3HHeJ_P0085304 Dchs1 protein_coding protein_coding MGP_C3HHeJ_T0085305.1 MGP_C3HHeJ_G0032460.1 mouse_genomes_project 7 109051062 109051976 - Dchs1 protein_coding retained_intron MGP_C3HHeJ_T0085306.1 MGP_C3HHeJ_G0032460.1 mouse_genomes_project 7 109058238 109082134 - MGP_C3HHeJ_P0085306 Dchs1 protein_coding protein_coding MGP_C3HHeJ_T0102268.1 MGP_C3HHeJ_G0040231.1 mouse_genomes_project 7 87619357 87619877 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018140.1 MGP_C3HHeJ_G0015430.1 mouse_genomes_project 7 50308118 50316056 + processed_transcript processed_transcript MGP_C3HHeJ_T0018141.1 MGP_C3HHeJ_G0015430.1 mouse_genomes_project 7 50311460 50316703 + processed_transcript processed_transcript MGP_C3HHeJ_T0005206.1 MGP_C3HHeJ_G0004411.1 mouse_genomes_project 7 124655486 124658083 - antisense antisense MGP_C3HHeJ_T0010805.1 MGP_C3HHeJ_G0008938.1 mouse_genomes_project 7 63856253 63856341 - Mir344i miRNA miRNA MGP_C3HHeJ_T0083656.1 MGP_C3HHeJ_G0031994.1 mouse_genomes_project 7 49868790 49881169 - MGP_C3HHeJ_P0083656 Mrgprb1 protein_coding protein_coding MGP_C3HHeJ_T0083657.1 MGP_C3HHeJ_G0031994.1 mouse_genomes_project 7 49871577 49881122 - MGP_C3HHeJ_P0083657 Mrgprb1 protein_coding protein_coding MGP_C3HHeJ_T0083658.1 MGP_C3HHeJ_G0031994.1 mouse_genomes_project 7 49871807 49881073 - MGP_C3HHeJ_P0083658 Mrgprb1 protein_coding protein_coding MGP_C3HHeJ_T0100837.1 MGP_C3HHeJ_G0039031.1 mouse_genomes_project 7 70980191 70980328 - Gm23795 snoRNA snoRNA MGP_C3HHeJ_T0081164.1 MGP_C3HHeJ_G0031315.1 mouse_genomes_project 7 3637232 3638159 + MGP_C3HHeJ_P0081164 Olfr1350 protein_coding protein_coding MGP_C3HHeJ_T0081136.1 MGP_C3HHeJ_G0031301.1 mouse_genomes_project 7 3306035 3339677 + MGP_C3HHeJ_P0081136 Gm6792 protein_coding protein_coding MGP_C3HHeJ_T0081137.1 MGP_C3HHeJ_G0031301.1 mouse_genomes_project 7 3313942 3339884 + Gm6792 protein_coding processed_transcript MGP_C3HHeJ_T0081138.1 MGP_C3HHeJ_G0031301.1 mouse_genomes_project 7 3315743 3339677 + MGP_C3HHeJ_P0081138 Gm6792 protein_coding protein_coding MGP_C3HHeJ_T0084835.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103607365 103651046 - MGP_C3HHeJ_P0084835 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084836.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103607375 103609240 - MGP_C3HHeJ_P0084836 protein_coding protein_coding MGP_C3HHeJ_T0084837.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103610870 103641595 - protein_coding processed_transcript MGP_C3HHeJ_T0084838.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103612210 103659493 - protein_coding processed_transcript MGP_C3HHeJ_T0084839.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103614387 103674832 - protein_coding processed_transcript MGP_C3HHeJ_T0084840.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103626071 103651146 - protein_coding processed_transcript MGP_C3HHeJ_T0084841.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103632065 103651111 - MGP_C3HHeJ_P0084841 protein_coding protein_coding MGP_C3HHeJ_T0084842.1 MGP_C3HHeJ_G0032273.1 mouse_genomes_project 7 103632080 103674529 - protein_coding processed_transcript MGP_C3HHeJ_T0002204.1 MGP_C3HHeJ_G0002125.1 mouse_genomes_project 7 66073472 66073908 - TEC TEC MGP_C3HHeJ_T0084622.1 MGP_C3HHeJ_G0032222.1 mouse_genomes_project 7 100257513 100280586 + MGP_C3HHeJ_P0084622 Alg8 protein_coding protein_coding MGP_C3HHeJ_T0084623.1 MGP_C3HHeJ_G0032222.1 mouse_genomes_project 7 100274124 100280148 + Alg8 protein_coding retained_intron MGP_C3HHeJ_T0084624.1 MGP_C3HHeJ_G0032222.1 mouse_genomes_project 7 100274381 100280482 + Alg8 protein_coding processed_transcript MGP_C3HHeJ_T0084625.1 MGP_C3HHeJ_G0032222.1 mouse_genomes_project 7 100274709 100280045 + Alg8 protein_coding processed_transcript MGP_C3HHeJ_T0084626.1 MGP_C3HHeJ_G0032222.1 mouse_genomes_project 7 100275531 100280206 + Alg8 protein_coding retained_intron MGP_C3HHeJ_T0084627.1 MGP_C3HHeJ_G0032222.1 mouse_genomes_project 7 100279173 100280289 + Alg8 protein_coding retained_intron MGP_C3HHeJ_T0015608.1 MGP_C3HHeJ_G0013712.1 mouse_genomes_project 7 49519002 49519672 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010816.1 MGP_C3HHeJ_G0008949.1 mouse_genomes_project 7 88891355 88891451 - Gm23192 miRNA miRNA MGP_C3HHeJ_T0085666.1 MGP_C3HHeJ_G0032590.1 mouse_genomes_project 7 120128742 120166532 + MGP_C3HHeJ_P0085666 Nucb2 protein_coding protein_coding MGP_C3HHeJ_T0085667.1 MGP_C3HHeJ_G0032590.1 mouse_genomes_project 7 120128757 120134787 + Nucb2 protein_coding processed_transcript MGP_C3HHeJ_T0085668.1 MGP_C3HHeJ_G0032590.1 mouse_genomes_project 7 120128788 120166391 + MGP_C3HHeJ_P0085668 Nucb2 protein_coding protein_coding MGP_C3HHeJ_T0085669.1 MGP_C3HHeJ_G0032590.1 mouse_genomes_project 7 120154700 120161924 + MGP_C3HHeJ_P0085669 Nucb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085117.1 MGP_C3HHeJ_G0032383.1 mouse_genomes_project 7 107205495 107206443 + MGP_C3HHeJ_P0085117 protein_coding protein_coding MGP_C3HHeJ_T0086852.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138647652 138750582 - MGP_C3HHeJ_P0086852 D7Ertd443e protein_coding protein_coding MGP_C3HHeJ_T0086853.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138648099 138757481 - MGP_C3HHeJ_P0086853 D7Ertd443e protein_coding protein_coding MGP_C3HHeJ_T0086854.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138648112 138732856 - MGP_C3HHeJ_P0086854 D7Ertd443e protein_coding protein_coding MGP_C3HHeJ_T0086855.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138648651 138650678 - D7Ertd443e protein_coding retained_intron MGP_C3HHeJ_T0086856.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138648651 138739784 - MGP_C3HHeJ_P0086856 D7Ertd443e protein_coding protein_coding MGP_C3HHeJ_T0086857.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138740420 138769406 - MGP_C3HHeJ_P0086857 D7Ertd443e protein_coding protein_coding MGP_C3HHeJ_T0086858.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138740541 138769400 - MGP_C3HHeJ_P0086858 D7Ertd443e protein_coding protein_coding MGP_C3HHeJ_T0086859.1 MGP_C3HHeJ_G0032825.1 mouse_genomes_project 7 138746558 138778236 - D7Ertd443e protein_coding processed_transcript MGP_C3HHeJ_T0015503.1 MGP_C3HHeJ_G0013607.1 mouse_genomes_project 7 9746533 9747188 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008733.1 MGP_C3HHeJ_G0007047.1 mouse_genomes_project 7 23741247 23745265 + Gm44970 lincRNA lincRNA MGP_C3HHeJ_T0102183.1 MGP_C3HHeJ_G0040147.1 mouse_genomes_project 7 12420340 12420835 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008739.1 MGP_C3HHeJ_G0007051.1 mouse_genomes_project 7 24761890 24772026 + Gm30146 lincRNA lincRNA MGP_C3HHeJ_T0086663.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134362329 134469402 - MGP_C3HHeJ_P0086663 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086664.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134362329 134469402 - MGP_C3HHeJ_P0086664 Fgfr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086665.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363425 134367702 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0086666.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363526 134469348 - MGP_C3HHeJ_P0086666 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086667.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363526 134469420 - MGP_C3HHeJ_P0086667 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086668.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363625 134371732 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0086669.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086669 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086670.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086670 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086671.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086671 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086672.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086672 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086673.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086673 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086674.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086674 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086675.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086675 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086676.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086676 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086677.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086677 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086678.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086678 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086679.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086679 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086680.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086680 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086681.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134363776 134464992 - MGP_C3HHeJ_P0086681 Fgfr2 protein_coding protein_coding MGP_C3HHeJ_T0086682.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134369559 134377882 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0086683.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134377597 134382328 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0086684.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134380020 134397440 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0086685.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134384460 134396952 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0086686.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134401016 134431014 - MGP_C3HHeJ_P0086686 Fgfr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086687.1 MGP_C3HHeJ_G0032787.1 mouse_genomes_project 7 134444166 134467110 - Fgfr2 protein_coding retained_intron MGP_C3HHeJ_T0083241.1 MGP_C3HHeJ_G0031879.1 mouse_genomes_project 7 45664101 45726255 - MGP_C3HHeJ_P0083241 Myh14 protein_coding protein_coding MGP_C3HHeJ_T0083242.1 MGP_C3HHeJ_G0031879.1 mouse_genomes_project 7 45664101 45726255 - MGP_C3HHeJ_P0083242 Myh14 protein_coding protein_coding MGP_C3HHeJ_T0102229.1 MGP_C3HHeJ_G0040192.1 mouse_genomes_project 7 44992826 45078825 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008801.1 MGP_C3HHeJ_G0007101.1 mouse_genomes_project 7 67477108 67530765 - lincRNA lincRNA MGP_C3HHeJ_T0081680.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18091913 18094972 - MGP_C3HHeJ_P0081680 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081681.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092070 18094858 - MGP_C3HHeJ_P0081681 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081682.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092075 18094213 - MGP_C3HHeJ_P0081682 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081683.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092075 18094814 - MGP_C3HHeJ_P0081683 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081684.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092075 18094858 - MGP_C3HHeJ_P0081684 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081685.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092423 18094844 - MGP_C3HHeJ_P0081685 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081686.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092424 18094427 - MGP_C3HHeJ_P0081686 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081687.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18092647 18094053 - MGP_C3HHeJ_P0081687 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081688.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18093043 18094856 - MGP_C3HHeJ_P0081688 Apoe protein_coding protein_coding MGP_C3HHeJ_T0081689.1 MGP_C3HHeJ_G0031495.1 mouse_genomes_project 7 18093059 18094073 - MGP_C3HHeJ_P0081689 Apoe protein_coding protein_coding MGP_C3HHeJ_T0098183.1 MGP_C3HHeJ_G0036395.1 mouse_genomes_project 7 132911841 132911959 - n-R5s158 rRNA rRNA MGP_C3HHeJ_T0011598.1 MGP_C3HHeJ_G0009731.1 mouse_genomes_project 7 106501160 106502118 + Gm23973 misc_RNA misc_RNA MGP_C3HHeJ_T0082175.1 MGP_C3HHeJ_G0031626.1 mouse_genomes_project 7 26755337 26773553 - MGP_C3HHeJ_P0082175 Map3k10 protein_coding protein_coding MGP_C3HHeJ_T0082176.1 MGP_C3HHeJ_G0031626.1 mouse_genomes_project 7 26755626 26773557 - MGP_C3HHeJ_P0082176 Map3k10 protein_coding protein_coding MGP_C3HHeJ_T0082177.1 MGP_C3HHeJ_G0031626.1 mouse_genomes_project 7 26763116 26764066 - Map3k10 protein_coding retained_intron MGP_C3HHeJ_T0082178.1 MGP_C3HHeJ_G0031626.1 mouse_genomes_project 7 26763138 26773316 - Map3k10 protein_coding retained_intron MGP_C3HHeJ_T0082179.1 MGP_C3HHeJ_G0031626.1 mouse_genomes_project 7 26767106 26773540 - MGP_C3HHeJ_P0082179 Map3k10 protein_coding protein_coding MGP_C3HHeJ_T0085086.1 MGP_C3HHeJ_G0032354.1 mouse_genomes_project 7 106612453 106613398 - MGP_C3HHeJ_P0085086 protein_coding protein_coding MGP_C3HHeJ_T0082340.1 MGP_C3HHeJ_G0031673.1 mouse_genomes_project 7 28245806 28266065 + MGP_C3HHeJ_P0082340 Map4k1 protein_coding protein_coding MGP_C3HHeJ_T0082341.1 MGP_C3HHeJ_G0031673.1 mouse_genomes_project 7 28245908 28265952 + MGP_C3HHeJ_P0082341 Map4k1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085494.1 MGP_C3HHeJ_G0032559.1 mouse_genomes_project 7 114326382 114339237 - MGP_C3HHeJ_P0085494 Lyve1 protein_coding protein_coding MGP_C3HHeJ_T0081178.1 MGP_C3HHeJ_G0031321.1 mouse_genomes_project 7 4273225 4285458 + MGP_C3HHeJ_P0081178 Zfp418 protein_coding protein_coding MGP_C3HHeJ_T0085363.1 MGP_C3HHeJ_G0032504.1 mouse_genomes_project 7 111405696 111406807 + MGP_C3HHeJ_P0085363 Olfr479 protein_coding protein_coding MGP_C3HHeJ_T0098258.1 MGP_C3HHeJ_G0036470.1 mouse_genomes_project 7 3806958 3807052 + Gm27675 sRNA sRNA MGP_C3HHeJ_T0099566.1 MGP_C3HHeJ_G0037760.1 mouse_genomes_project 7 17049886 17049993 - Gm24464 snRNA snRNA MGP_C3HHeJ_T0087443.1 MGP_C3HHeJ_G0032974.1 mouse_genomes_project 7 148310879 148346439 - MGP_C3HHeJ_P0087443 Nap1l4 protein_coding protein_coding MGP_C3HHeJ_T0102318.1 MGP_C3HHeJ_G0040281.1 mouse_genomes_project 7 132445790 132445984 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082065.1 MGP_C3HHeJ_G0031605.1 mouse_genomes_project 7 26227337 26240336 - MGP_C3HHeJ_P0082065 Gm21983 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099583.1 MGP_C3HHeJ_G0037777.1 mouse_genomes_project 7 71546612 71546719 - Gm23815 snRNA snRNA MGP_C3HHeJ_T0099603.1 MGP_C3HHeJ_G0037797.1 mouse_genomes_project 7 115443589 115443739 - Gm23345 snRNA snRNA MGP_C3HHeJ_T0081471.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15017991 15041455 - MGP_C3HHeJ_P0081471 Ppp5c protein_coding protein_coding MGP_C3HHeJ_T0081472.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15018454 15020422 - Ppp5c protein_coding retained_intron MGP_C3HHeJ_T0081473.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15020491 15028776 - Ppp5c protein_coding retained_intron MGP_C3HHeJ_T0081474.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15021063 15041566 - Ppp5c protein_coding processed_transcript MGP_C3HHeJ_T0081475.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15021072 15022477 - Ppp5c protein_coding retained_intron MGP_C3HHeJ_T0081476.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15021865 15041536 - Ppp5c protein_coding processed_transcript MGP_C3HHeJ_T0081477.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15021889 15023427 - Ppp5c protein_coding retained_intron MGP_C3HHeJ_T0081478.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15023237 15038313 - Ppp5c protein_coding processed_transcript MGP_C3HHeJ_T0081479.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15028768 15041257 - Ppp5c protein_coding processed_transcript MGP_C3HHeJ_T0081480.1 MGP_C3HHeJ_G0031428.1 mouse_genomes_project 7 15035942 15041431 - Ppp5c protein_coding processed_transcript MGP_C3HHeJ_T0082555.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882072 29905606 + MGP_C3HHeJ_P0082555 Prodh2 protein_coding protein_coding MGP_C3HHeJ_T0082556.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882108 29900966 + Prodh2 protein_coding processed_transcript MGP_C3HHeJ_T0082557.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882108 29898754 + MGP_C3HHeJ_P0082557 Prodh2 protein_coding protein_coding MGP_C3HHeJ_T0082558.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882109 29882738 + Prodh2 protein_coding retained_intron MGP_C3HHeJ_T0082559.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882109 29898982 + MGP_C3HHeJ_P0082559 Prodh2 protein_coding protein_coding MGP_C3HHeJ_T0082560.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882131 29898843 + MGP_C3HHeJ_P0082560 Prodh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082561.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29882230 29899050 + MGP_C3HHeJ_P0082561 Prodh2 protein_coding protein_coding MGP_C3HHeJ_T0082562.1 MGP_C3HHeJ_G0031726.1 mouse_genomes_project 7 29899081 29905242 + MGP_C3HHeJ_P0082562 Prodh2 protein_coding protein_coding MGP_C3HHeJ_T0081353.1 MGP_C3HHeJ_G0031397.1 mouse_genomes_project 7 13903047 13934554 - MGP_C3HHeJ_P0081353 Gltscr1 protein_coding protein_coding MGP_C3HHeJ_T0002240.1 MGP_C3HHeJ_G0002160.1 mouse_genomes_project 7 81981122 81982731 - TEC TEC MGP_C3HHeJ_T0005115.1 MGP_C3HHeJ_G0004348.1 mouse_genomes_project 7 30135914 30153265 + Gm26935 antisense antisense MGP_C3HHeJ_T0083721.1 MGP_C3HHeJ_G0032012.1 mouse_genomes_project 7 53557290 53567024 - MGP_C3HHeJ_P0083721 Svip protein_coding protein_coding MGP_C3HHeJ_T0010819.1 MGP_C3HHeJ_G0008952.1 mouse_genomes_project 7 102533159 102533254 + Mir326 miRNA miRNA MGP_C3HHeJ_T0085462.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113774255 114087710 - MGP_C3HHeJ_P0085462 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085463.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113774264 114087708 - MGP_C3HHeJ_P0085463 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085464.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113775640 114087549 - MGP_C3HHeJ_P0085464 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085465.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113786846 113806384 - Sbf2 protein_coding retained_intron MGP_C3HHeJ_T0085466.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113796034 113832124 - MGP_C3HHeJ_P0085466 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085467.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113805282 113818046 - Sbf2 protein_coding retained_intron MGP_C3HHeJ_T0085468.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113807425 113834565 - MGP_C3HHeJ_P0085468 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085469.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113847354 114087702 - Sbf2 protein_coding retained_intron MGP_C3HHeJ_T0085470.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113847665 114087684 - Sbf2 protein_coding retained_intron MGP_C3HHeJ_T0085471.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113891512 113910926 - MGP_C3HHeJ_P0085471 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085472.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113894123 114087670 - Sbf2 protein_coding retained_intron MGP_C3HHeJ_T0085473.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113909919 114087693 - MGP_C3HHeJ_P0085473 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085474.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113910106 113934036 - MGP_C3HHeJ_P0085474 Sbf2 protein_coding protein_coding MGP_C3HHeJ_T0085475.1 MGP_C3HHeJ_G0032555.1 mouse_genomes_project 7 113933979 114087549 - MGP_C3HHeJ_P0085475 Sbf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015571.1 MGP_C3HHeJ_G0013675.1 mouse_genomes_project 7 33983774 33983841 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083816.1 MGP_C3HHeJ_G0032029.1 mouse_genomes_project 7 61335410 61348862 - MGP_C3HHeJ_P0083816 Snurf protein_coding protein_coding MGP_C3HHeJ_T0085343.1 MGP_C3HHeJ_G0032490.1 mouse_genomes_project 7 110525884 110527360 + MGP_C3HHeJ_P0085343 Rbmxl2 protein_coding protein_coding MGP_C3HHeJ_T0005122.1 MGP_C3HHeJ_G0004354.1 mouse_genomes_project 7 34330184 34336020 + Gm12758 antisense antisense MGP_C3HHeJ_T0005123.1 MGP_C3HHeJ_G0004354.1 mouse_genomes_project 7 34330253 34331364 + Gm12758 antisense antisense MGP_C3HHeJ_T0084989.1 MGP_C3HHeJ_G0032300.1 mouse_genomes_project 7 105239517 105275838 + MGP_C3HHeJ_P0084989 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084990.1 MGP_C3HHeJ_G0032300.1 mouse_genomes_project 7 105239517 105275390 + MGP_C3HHeJ_P0084990 protein_coding protein_coding MGP_C3HHeJ_T0084992.1 MGP_C3HHeJ_G0032300.1 mouse_genomes_project 7 105239582 105275308 + MGP_C3HHeJ_P0084992 protein_coding protein_coding MGP_C3HHeJ_T0084993.1 MGP_C3HHeJ_G0032300.1 mouse_genomes_project 7 105251407 105275308 + MGP_C3HHeJ_P0084993 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084994.1 MGP_C3HHeJ_G0032300.1 mouse_genomes_project 7 105251411 105275300 + MGP_C3HHeJ_P0084994 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081531.1 MGP_C3HHeJ_G0031454.1 mouse_genomes_project 7 17339494 17349977 + MGP_C3HHeJ_P0081531 Mypop protein_coding protein_coding MGP_C3HHeJ_T0081532.1 MGP_C3HHeJ_G0031454.1 mouse_genomes_project 7 17339568 17349979 + MGP_C3HHeJ_P0081532 Mypop protein_coding protein_coding MGP_C3HHeJ_T0081533.1 MGP_C3HHeJ_G0031454.1 mouse_genomes_project 7 17340220 17341352 + Mypop protein_coding retained_intron MGP_C3HHeJ_T0083889.1 MGP_C3HHeJ_G0032047.1 mouse_genomes_project 7 67539347 67579606 + Tarsl2 protein_coding retained_intron MGP_C3HHeJ_T0083890.1 MGP_C3HHeJ_G0032047.1 mouse_genomes_project 7 67539347 67587883 + MGP_C3HHeJ_P0083890 Tarsl2 protein_coding protein_coding MGP_C3HHeJ_T0083891.1 MGP_C3HHeJ_G0032047.1 mouse_genomes_project 7 67553455 67557040 + Tarsl2 protein_coding retained_intron MGP_C3HHeJ_T0083892.1 MGP_C3HHeJ_G0032047.1 mouse_genomes_project 7 67573013 67585874 + Tarsl2 protein_coding processed_transcript MGP_C3HHeJ_T0008740.1 MGP_C3HHeJ_G0007052.1 mouse_genomes_project 7 28337938 28347591 + Gm26604 lincRNA lincRNA MGP_C3HHeJ_T0084537.1 MGP_C3HHeJ_G0032200.1 mouse_genomes_project 7 92585340 92613884 - MGP_C3HHeJ_P0084537 l7Rn6 protein_coding protein_coding MGP_C3HHeJ_T0084538.1 MGP_C3HHeJ_G0032200.1 mouse_genomes_project 7 92587838 92613952 - MGP_C3HHeJ_P0084538 l7Rn6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084539.1 MGP_C3HHeJ_G0032200.1 mouse_genomes_project 7 92588055 92613970 - MGP_C3HHeJ_P0084539 l7Rn6 protein_coding protein_coding MGP_C3HHeJ_T0084540.1 MGP_C3HHeJ_G0032200.1 mouse_genomes_project 7 92588707 92594098 - l7Rn6 protein_coding retained_intron MGP_C3HHeJ_T0084541.1 MGP_C3HHeJ_G0032200.1 mouse_genomes_project 7 92602541 92614051 - l7Rn6 protein_coding processed_transcript MGP_C3HHeJ_T0015564.1 MGP_C3HHeJ_G0013668.1 mouse_genomes_project 7 33554466 33554919 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083146.1 MGP_C3HHeJ_G0031863.1 mouse_genomes_project 7 45288961 45293255 - MGP_C3HHeJ_P0083146 Acpt protein_coding protein_coding MGP_C3HHeJ_T0083147.1 MGP_C3HHeJ_G0031863.1 mouse_genomes_project 7 45288968 45293082 - MGP_C3HHeJ_P0083147 Acpt protein_coding protein_coding MGP_C3HHeJ_T0082818.1 MGP_C3HHeJ_G0031777.1 mouse_genomes_project 7 34280442 34293137 - MGP_C3HHeJ_P0082818 Pdcd2l protein_coding protein_coding MGP_C3HHeJ_T0082819.1 MGP_C3HHeJ_G0031777.1 mouse_genomes_project 7 34280576 34293084 - MGP_C3HHeJ_P0082819 Pdcd2l protein_coding protein_coding MGP_C3HHeJ_T0082820.1 MGP_C3HHeJ_G0031777.1 mouse_genomes_project 7 34284905 34289257 - Pdcd2l protein_coding retained_intron MGP_C3HHeJ_T0082821.1 MGP_C3HHeJ_G0031777.1 mouse_genomes_project 7 34289318 34292622 - Pdcd2l protein_coding processed_transcript MGP_C3HHeJ_T0083882.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67176447 67253121 - MGP_C3HHeJ_P0083882 Tjp1 protein_coding protein_coding MGP_C3HHeJ_T0083883.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67176990 67252897 - MGP_C3HHeJ_P0083883 Tjp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083884.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67176990 67252897 - MGP_C3HHeJ_P0083884 Tjp1 protein_coding protein_coding MGP_C3HHeJ_T0083885.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67177786 67182586 - Tjp1 protein_coding processed_transcript MGP_C3HHeJ_T0083886.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67222049 67224624 - Tjp1 protein_coding retained_intron MGP_C3HHeJ_T0083887.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67224443 67425123 - MGP_C3HHeJ_P0083887 Tjp1 protein_coding protein_coding MGP_C3HHeJ_T0083888.1 MGP_C3HHeJ_G0032046.1 mouse_genomes_project 7 67410525 67425208 - Tjp1 protein_coding retained_intron MGP_C3HHeJ_T0011584.1 MGP_C3HHeJ_G0009717.1 mouse_genomes_project 7 11027304 11027572 + Gm23499 misc_RNA misc_RNA MGP_C3HHeJ_T0018104.1 MGP_C3HHeJ_G0015415.1 mouse_genomes_project 7 3726547 3734319 - processed_transcript lincRNA MGP_C3HHeJ_T0015538.1 MGP_C3HHeJ_G0013642.1 mouse_genomes_project 7 23435980 23436183 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085368.1 MGP_C3HHeJ_G0032509.1 mouse_genomes_project 7 111493605 111494703 - MGP_C3HHeJ_P0085368 protein_coding protein_coding MGP_C3HHeJ_T0005208.1 MGP_C3HHeJ_G0004413.1 mouse_genomes_project 7 125282321 125408322 - 4933432K03Rik antisense antisense MGP_C3HHeJ_T0005209.1 MGP_C3HHeJ_G0004413.1 mouse_genomes_project 7 125378134 125408324 - 4933432K03Rik antisense antisense MGP_C3HHeJ_T0005210.1 MGP_C3HHeJ_G0004413.1 mouse_genomes_project 7 125407763 125429661 - 4933432K03Rik antisense antisense MGP_C3HHeJ_T0085357.1 MGP_C3HHeJ_G0032498.1 mouse_genomes_project 7 111254181 111255264 + MGP_C3HHeJ_P0085357 Olfr472 protein_coding protein_coding MGP_C3HHeJ_T0082492.1 MGP_C3HHeJ_G0031711.1 mouse_genomes_project 7 29613789 29616076 - MGP_C3HHeJ_P0082492 Ovol3 protein_coding protein_coding MGP_C3HHeJ_T0010771.1 MGP_C3HHeJ_G0008904.1 mouse_genomes_project 7 30488567 30488627 - Mir7050 miRNA miRNA MGP_C3HHeJ_T0083692.1 MGP_C3HHeJ_G0032003.1 mouse_genomes_project 7 51235144 51249984 + MGP_C3HHeJ_P0083692 Htatip2 protein_coding protein_coding MGP_C3HHeJ_T0083693.1 MGP_C3HHeJ_G0032003.1 mouse_genomes_project 7 51235191 51249988 + MGP_C3HHeJ_P0083693 Htatip2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083348.1 MGP_C3HHeJ_G0031911.1 mouse_genomes_project 7 46252848 46258515 + MGP_C3HHeJ_P0083348 Pih1d1 protein_coding protein_coding MGP_C3HHeJ_T0083349.1 MGP_C3HHeJ_G0031911.1 mouse_genomes_project 7 46254385 46258515 + MGP_C3HHeJ_P0083349 Pih1d1 protein_coding protein_coding MGP_C3HHeJ_T0085097.1 MGP_C3HHeJ_G0032365.1 mouse_genomes_project 7 106849197 106850160 + MGP_C3HHeJ_P0085097 Olfr619 protein_coding protein_coding MGP_C3HHeJ_T0083821.1 MGP_C3HHeJ_G0032034.1 mouse_genomes_project 7 64937749 65059404 - MGP_C3HHeJ_P0083821 Chrna7 protein_coding protein_coding MGP_C3HHeJ_T0015672.1 MGP_C3HHeJ_G0013776.1 mouse_genomes_project 7 100294382 100294570 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086576.1 MGP_C3HHeJ_G0032772.1 mouse_genomes_project 7 132309782 132310735 - MGP_C3HHeJ_P0086576 Cox6a2 protein_coding protein_coding MGP_C3HHeJ_T0087058.1 MGP_C3HHeJ_G0032896.1 mouse_genomes_project 7 145530541 145532045 - MGP_C3HHeJ_P0087058 Cox8b protein_coding protein_coding MGP_C3HHeJ_T0099559.1 MGP_C3HHeJ_G0037753.1 mouse_genomes_project 7 1714994 1715096 + Gm24537 snRNA snRNA MGP_C3HHeJ_T0086603.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132380764 132384234 - BC017158 protein_coding retained_intron MGP_C3HHeJ_T0086604.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132380764 132407326 - MGP_C3HHeJ_P0086604 BC017158 protein_coding protein_coding MGP_C3HHeJ_T0086605.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132381492 132407264 - BC017158 protein_coding retained_intron MGP_C3HHeJ_T0086606.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132381492 132407265 - BC017158 protein_coding retained_intron MGP_C3HHeJ_T0086607.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132381711 132407251 - MGP_C3HHeJ_P0086607 BC017158 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086608.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132385350 132406731 - BC017158 protein_coding retained_intron MGP_C3HHeJ_T0086609.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132385686 132397876 - BC017158 protein_coding retained_intron MGP_C3HHeJ_T0086610.1 MGP_C3HHeJ_G0032778.1 mouse_genomes_project 7 132397135 132399786 - MGP_C3HHeJ_P0086610 BC017158 protein_coding protein_coding MGP_C3HHeJ_T0099607.1 MGP_C3HHeJ_G0037801.1 mouse_genomes_project 7 124818928 124819031 - Gm25924 snRNA snRNA MGP_C3HHeJ_T0084784.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103112257 103152280 - MGP_C3HHeJ_P0084784 Pold3 protein_coding protein_coding MGP_C3HHeJ_T0084785.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103113537 103152170 - MGP_C3HHeJ_P0084785 Pold3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084786.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103113727 103123117 - Pold3 protein_coding retained_intron MGP_C3HHeJ_T0084787.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103113806 103119817 - Pold3 protein_coding retained_intron MGP_C3HHeJ_T0084788.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103125762 103130097 - Pold3 protein_coding retained_intron MGP_C3HHeJ_T0084789.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103128431 103129970 - Pold3 protein_coding retained_intron MGP_C3HHeJ_T0084790.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103128958 103152173 - Pold3 protein_coding processed_transcript MGP_C3HHeJ_T0084791.1 MGP_C3HHeJ_G0032262.1 mouse_genomes_project 7 103142859 103150499 - Pold3 protein_coding processed_transcript MGP_C3HHeJ_T0087070.1 MGP_C3HHeJ_G0032900.1 mouse_genomes_project 7 145586437 145588077 - MGP_C3HHeJ_P0087070 Ifitm2 protein_coding protein_coding MGP_C3HHeJ_T0085901.1 MGP_C3HHeJ_G0032650.1 mouse_genomes_project 7 125981270 125998837 + MGP_C3HHeJ_P0085901 Dctn5 protein_coding protein_coding MGP_C3HHeJ_T0085902.1 MGP_C3HHeJ_G0032650.1 mouse_genomes_project 7 125981283 125998837 + Dctn5 protein_coding retained_intron MGP_C3HHeJ_T0085903.1 MGP_C3HHeJ_G0032650.1 mouse_genomes_project 7 125981301 125983382 + MGP_C3HHeJ_P0085903 Dctn5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085904.1 MGP_C3HHeJ_G0032650.1 mouse_genomes_project 7 125992044 125998374 + MGP_C3HHeJ_P0085904 Dctn5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086555.1 MGP_C3HHeJ_G0032766.1 mouse_genomes_project 7 132077231 132081391 - MGP_C3HHeJ_P0086555 Pycard protein_coding protein_coding MGP_C3HHeJ_T0086556.1 MGP_C3HHeJ_G0032766.1 mouse_genomes_project 7 132079163 132081051 - MGP_C3HHeJ_P0086556 Pycard protein_coding protein_coding MGP_C3HHeJ_T0099594.1 MGP_C3HHeJ_G0037788.1 mouse_genomes_project 7 99815659 99815768 - Gm22226 snRNA snRNA MGP_C3HHeJ_T0085045.1 MGP_C3HHeJ_G0032316.1 mouse_genomes_project 7 105799595 105800633 + MGP_C3HHeJ_P0085045 Olfr550 protein_coding protein_coding MGP_C3HHeJ_T0084793.1 MGP_C3HHeJ_G0032264.1 mouse_genomes_project 7 103212961 103221159 + MGP_C3HHeJ_P0084793 Kcne3 protein_coding protein_coding MGP_C3HHeJ_T0084794.1 MGP_C3HHeJ_G0032264.1 mouse_genomes_project 7 103214983 103221159 + MGP_C3HHeJ_P0084794 Kcne3 protein_coding protein_coding MGP_C3HHeJ_T0084795.1 MGP_C3HHeJ_G0032264.1 mouse_genomes_project 7 103214983 103221159 + MGP_C3HHeJ_P0084795 Kcne3 protein_coding protein_coding MGP_C3HHeJ_T0084796.1 MGP_C3HHeJ_G0032264.1 mouse_genomes_project 7 103214983 103221159 + MGP_C3HHeJ_P0084796 Kcne3 protein_coding protein_coding MGP_C3HHeJ_T0084947.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105044899 105063657 + MGP_C3HHeJ_P0084947 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084948.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060124 105062139 + Anapc15 protein_coding processed_transcript MGP_C3HHeJ_T0084949.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060434 105063655 + MGP_C3HHeJ_P0084949 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084950.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060502 105062341 + Anapc15 protein_coding retained_intron MGP_C3HHeJ_T0084951.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060510 105063595 + MGP_C3HHeJ_P0084951 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084952.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060511 105065754 + MGP_C3HHeJ_P0084952 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084953.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060522 105063653 + Anapc15 protein_coding retained_intron MGP_C3HHeJ_T0084954.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105060957 105062142 + Anapc15 protein_coding processed_transcript MGP_C3HHeJ_T0084955.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105061055 105063157 + MGP_C3HHeJ_P0084955 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084956.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105061482 105062693 + Anapc15 protein_coding retained_intron MGP_C3HHeJ_T0084957.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105061846 105065960 + MGP_C3HHeJ_P0084957 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084958.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105061909 105065754 + MGP_C3HHeJ_P0084958 Anapc15 protein_coding protein_coding MGP_C3HHeJ_T0084960.1 MGP_C3HHeJ_G0032292.1 mouse_genomes_project 7 105063106 105063659 + Anapc15 protein_coding processed_transcript MGP_C3HHeJ_T0010797.1 MGP_C3HHeJ_G0008930.1 mouse_genomes_project 7 63480102 63480172 - Gm23873 miRNA miRNA MGP_C3HHeJ_T0081245.1 MGP_C3HHeJ_G0031359.1 mouse_genomes_project 7 10552381 10557941 + MGP_C3HHeJ_P0081245 Zfp446 protein_coding protein_coding MGP_C3HHeJ_T0081246.1 MGP_C3HHeJ_G0031359.1 mouse_genomes_project 7 10552381 10558854 + MGP_C3HHeJ_P0081246 Zfp446 protein_coding protein_coding MGP_C3HHeJ_T0081247.1 MGP_C3HHeJ_G0031359.1 mouse_genomes_project 7 10552381 10557941 + MGP_C3HHeJ_P0081247 Zfp446 protein_coding protein_coding MGP_C3HHeJ_T0081248.1 MGP_C3HHeJ_G0031359.1 mouse_genomes_project 7 10552426 10556008 + Zfp446 protein_coding retained_intron MGP_C3HHeJ_T0081249.1 MGP_C3HHeJ_G0031359.1 mouse_genomes_project 7 10552773 10558860 + MGP_C3HHeJ_P0081249 Zfp446 protein_coding protein_coding MGP_C3HHeJ_T0081250.1 MGP_C3HHeJ_G0031359.1 mouse_genomes_project 7 10554055 10558885 + Zfp446 protein_coding retained_intron MGP_C3HHeJ_T0015558.1 MGP_C3HHeJ_G0013662.1 mouse_genomes_project 7 30633578 30634365 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100824.1 MGP_C3HHeJ_G0039018.1 mouse_genomes_project 7 46493892 46494046 + Gm22478 snoRNA snoRNA MGP_C3HHeJ_T0010844.1 MGP_C3HHeJ_G0008977.1 mouse_genomes_project 7 145888082 145888192 - Mir210 miRNA miRNA MGP_C3HHeJ_T0083617.1 MGP_C3HHeJ_G0031977.1 mouse_genomes_project 7 48003414 48032290 + MGP_C3HHeJ_P0083617 Gtf2h1 protein_coding protein_coding MGP_C3HHeJ_T0083618.1 MGP_C3HHeJ_G0031977.1 mouse_genomes_project 7 48003425 48012297 + MGP_C3HHeJ_P0083618 Gtf2h1 protein_coding protein_coding MGP_C3HHeJ_T0083619.1 MGP_C3HHeJ_G0031977.1 mouse_genomes_project 7 48003982 48031765 + MGP_C3HHeJ_P0083619 Gtf2h1 protein_coding protein_coding MGP_C3HHeJ_T0083620.1 MGP_C3HHeJ_G0031977.1 mouse_genomes_project 7 48008956 48031399 + MGP_C3HHeJ_P0083620 Gtf2h1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083621.1 MGP_C3HHeJ_G0031977.1 mouse_genomes_project 7 48015721 48022640 + Gtf2h1 protein_coding retained_intron MGP_C3HHeJ_T0085559.1 MGP_C3HHeJ_G0032572.1 mouse_genomes_project 7 116878041 116932878 - MGP_C3HHeJ_P0085559 Btbd10 protein_coding protein_coding MGP_C3HHeJ_T0085560.1 MGP_C3HHeJ_G0032572.1 mouse_genomes_project 7 116878052 116910682 - MGP_C3HHeJ_P0085560 Btbd10 protein_coding protein_coding MGP_C3HHeJ_T0085561.1 MGP_C3HHeJ_G0032572.1 mouse_genomes_project 7 116878061 116915434 - MGP_C3HHeJ_P0085561 Btbd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085562.1 MGP_C3HHeJ_G0032572.1 mouse_genomes_project 7 116890197 116894882 - Btbd10 protein_coding retained_intron MGP_C3HHeJ_T0085563.1 MGP_C3HHeJ_G0032572.1 mouse_genomes_project 7 116932153 116932875 - Btbd10 protein_coding processed_transcript MGP_C3HHeJ_T0085791.1 MGP_C3HHeJ_G0032619.1 mouse_genomes_project 7 123646908 123668656 + MGP_C3HHeJ_P0085791 Lyrm1 protein_coding protein_coding MGP_C3HHeJ_T0085792.1 MGP_C3HHeJ_G0032619.1 mouse_genomes_project 7 123646914 123668187 + MGP_C3HHeJ_P0085792 Lyrm1 protein_coding protein_coding MGP_C3HHeJ_T0085793.1 MGP_C3HHeJ_G0032619.1 mouse_genomes_project 7 123647339 123668652 + MGP_C3HHeJ_P0085793 Lyrm1 protein_coding protein_coding MGP_C3HHeJ_T0085794.1 MGP_C3HHeJ_G0032619.1 mouse_genomes_project 7 123651165 123668658 + MGP_C3HHeJ_P0085794 Lyrm1 protein_coding protein_coding MGP_C3HHeJ_T0010836.1 MGP_C3HHeJ_G0008969.1 mouse_genomes_project 7 132606332 132606457 - Gm24365 miRNA miRNA MGP_C3HHeJ_T0086737.1 MGP_C3HHeJ_G0032801.1 mouse_genomes_project 7 135663354 135686657 - MGP_C3HHeJ_P0086737 Ikzf5 protein_coding protein_coding MGP_C3HHeJ_T0086738.1 MGP_C3HHeJ_G0032801.1 mouse_genomes_project 7 135665070 135686633 - MGP_C3HHeJ_P0086738 Ikzf5 protein_coding protein_coding MGP_C3HHeJ_T0086739.1 MGP_C3HHeJ_G0032801.1 mouse_genomes_project 7 135667335 135686514 - MGP_C3HHeJ_P0086739 Ikzf5 protein_coding protein_coding MGP_C3HHeJ_T0086740.1 MGP_C3HHeJ_G0032801.1 mouse_genomes_project 7 135668204 135686631 - MGP_C3HHeJ_P0086740 Ikzf5 protein_coding protein_coding MGP_C3HHeJ_T0086741.1 MGP_C3HHeJ_G0032801.1 mouse_genomes_project 7 135672172 135685218 - MGP_C3HHeJ_P0086741 Ikzf5 protein_coding protein_coding MGP_C3HHeJ_T0086873.1 MGP_C3HHeJ_G0032836.1 mouse_genomes_project 7 141886586 141926847 - 9430038I01Rik protein_coding processed_transcript MGP_C3HHeJ_T0086874.1 MGP_C3HHeJ_G0032836.1 mouse_genomes_project 7 141886586 141926853 - MGP_C3HHeJ_P0086874 9430038I01Rik protein_coding protein_coding MGP_C3HHeJ_T0086875.1 MGP_C3HHeJ_G0032836.1 mouse_genomes_project 7 141887149 141926826 - MGP_C3HHeJ_P0086875 9430038I01Rik protein_coding protein_coding MGP_C3HHeJ_T0086876.1 MGP_C3HHeJ_G0032836.1 mouse_genomes_project 7 141895053 141926847 - 9430038I01Rik protein_coding retained_intron MGP_C3HHeJ_T0086877.1 MGP_C3HHeJ_G0032836.1 mouse_genomes_project 7 141895085 141926823 - MGP_C3HHeJ_P0086877 9430038I01Rik protein_coding protein_coding MGP_C3HHeJ_T0087172.1 MGP_C3HHeJ_G0032924.1 mouse_genomes_project 7 146092674 146098630 - Pddc1 protein_coding retained_intron MGP_C3HHeJ_T0087173.1 MGP_C3HHeJ_G0032924.1 mouse_genomes_project 7 146092723 146093871 - Pddc1 protein_coding retained_intron MGP_C3HHeJ_T0087174.1 MGP_C3HHeJ_G0032924.1 mouse_genomes_project 7 146092723 146098676 - MGP_C3HHeJ_P0087174 Pddc1 protein_coding protein_coding MGP_C3HHeJ_T0087175.1 MGP_C3HHeJ_G0032924.1 mouse_genomes_project 7 146092725 146098618 - Pddc1 protein_coding retained_intron MGP_C3HHeJ_T0087176.1 MGP_C3HHeJ_G0032924.1 mouse_genomes_project 7 146095383 146098605 - Pddc1 protein_coding retained_intron MGP_C3HHeJ_T0087177.1 MGP_C3HHeJ_G0032924.1 mouse_genomes_project 7 146096090 146098616 - Pddc1 protein_coding retained_intron MGP_C3HHeJ_T0015617.1 MGP_C3HHeJ_G0013721.1 mouse_genomes_project 7 57815939 57816831 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015499.1 MGP_C3HHeJ_G0013603.1 mouse_genomes_project 7 2958555 2959510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008954.1 MGP_C3HHeJ_G0007199.1 mouse_genomes_project 7 132727539 132729961 - Gm45121 lincRNA lincRNA MGP_C3HHeJ_T0099601.1 MGP_C3HHeJ_G0037795.1 mouse_genomes_project 7 113450783 113450837 + Gm24842 snRNA snRNA MGP_C3HHeJ_T0010741.1 MGP_C3HHeJ_G0008874.1 mouse_genomes_project 7 114621 114703 + Mir294 miRNA miRNA MGP_C3HHeJ_T0083048.1 MGP_C3HHeJ_G0031827.1 mouse_genomes_project 7 44423913 44432235 + MGP_C3HHeJ_P0083048 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080838.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 503269 512836 - MGP_C3HHeJ_P0080838 Tfpt protein_coding protein_coding MGP_C3HHeJ_T0080839.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 503269 512881 - MGP_C3HHeJ_P0080839 Tfpt protein_coding protein_coding MGP_C3HHeJ_T0080840.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 503280 512038 - MGP_C3HHeJ_P0080840 Tfpt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080841.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 503724 512531 - Tfpt protein_coding processed_transcript MGP_C3HHeJ_T0080842.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 503740 512779 - MGP_C3HHeJ_P0080842 Tfpt protein_coding protein_coding MGP_C3HHeJ_T0080843.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 503919 512811 - MGP_C3HHeJ_P0080843 Tfpt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080844.1 MGP_C3HHeJ_G0031226.1 mouse_genomes_project 7 507537 512531 - MGP_C3HHeJ_P0080844 Tfpt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008904.1 MGP_C3HHeJ_G0007169.1 mouse_genomes_project 7 117305101 117330578 + Gm29507 lincRNA lincRNA MGP_C3HHeJ_T0081797.1 MGP_C3HHeJ_G0031534.1 mouse_genomes_project 7 23177212 23191443 + MGP_C3HHeJ_P0081797 Plaur protein_coding protein_coding MGP_C3HHeJ_T0081798.1 MGP_C3HHeJ_G0031534.1 mouse_genomes_project 7 23177213 23180121 + Plaur protein_coding retained_intron MGP_C3HHeJ_T0081799.1 MGP_C3HHeJ_G0031534.1 mouse_genomes_project 7 23177223 23188463 + Plaur protein_coding retained_intron MGP_C3HHeJ_T0081800.1 MGP_C3HHeJ_G0031534.1 mouse_genomes_project 7 23177228 23191444 + Plaur protein_coding retained_intron MGP_C3HHeJ_T0081801.1 MGP_C3HHeJ_G0031534.1 mouse_genomes_project 7 23177228 23187496 + MGP_C3HHeJ_P0081801 Plaur protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081802.1 MGP_C3HHeJ_G0031534.1 mouse_genomes_project 7 23177228 23191201 + MGP_C3HHeJ_P0081802 Plaur protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081547.1 MGP_C3HHeJ_G0031459.1 mouse_genomes_project 7 17434471 17441000 + MGP_C3HHeJ_P0081547 Dmwd protein_coding protein_coding MGP_C3HHeJ_T0081548.1 MGP_C3HHeJ_G0031459.1 mouse_genomes_project 7 17434502 17441000 + MGP_C3HHeJ_P0081548 Dmwd protein_coding protein_coding MGP_C3HHeJ_T0081549.1 MGP_C3HHeJ_G0031459.1 mouse_genomes_project 7 17436236 17440999 + Dmwd protein_coding processed_transcript MGP_C3HHeJ_T0081550.1 MGP_C3HHeJ_G0031459.1 mouse_genomes_project 7 17436269 17440726 + Dmwd protein_coding processed_transcript MGP_C3HHeJ_T0085146.1 MGP_C3HHeJ_G0032405.1 mouse_genomes_project 7 107541810 107556356 - protein_coding processed_transcript MGP_C3HHeJ_T0085147.1 MGP_C3HHeJ_G0032405.1 mouse_genomes_project 7 107541813 107569685 - MGP_C3HHeJ_P0085147 protein_coding protein_coding MGP_C3HHeJ_T0085148.1 MGP_C3HHeJ_G0032405.1 mouse_genomes_project 7 107541813 107569686 - MGP_C3HHeJ_P0085148 protein_coding protein_coding MGP_C3HHeJ_T0085159.1 MGP_C3HHeJ_G0032405.1 mouse_genomes_project 7 107558716 107569693 - MGP_C3HHeJ_P0085159 protein_coding protein_coding MGP_C3HHeJ_T0085161.1 MGP_C3HHeJ_G0032405.1 mouse_genomes_project 7 107562495 107569573 - protein_coding processed_transcript MGP_C3HHeJ_T0085162.1 MGP_C3HHeJ_G0032405.1 mouse_genomes_project 7 107563377 107569696 - protein_coding retained_intron MGP_C3HHeJ_T0081826.1 MGP_C3HHeJ_G0031542.1 mouse_genomes_project 7 23332129 23351861 + MGP_C3HHeJ_P0081826 Phldb3 protein_coding protein_coding MGP_C3HHeJ_T0081827.1 MGP_C3HHeJ_G0031542.1 mouse_genomes_project 7 23332694 23351852 + MGP_C3HHeJ_P0081827 Phldb3 protein_coding protein_coding MGP_C3HHeJ_T0081828.1 MGP_C3HHeJ_G0031542.1 mouse_genomes_project 7 23340980 23349188 + Phldb3 protein_coding retained_intron MGP_C3HHeJ_T0081829.1 MGP_C3HHeJ_G0031542.1 mouse_genomes_project 7 23341382 23344271 + Phldb3 protein_coding processed_transcript MGP_C3HHeJ_T0010842.1 MGP_C3HHeJ_G0008975.1 mouse_genomes_project 7 144546760 144546832 - Mir202 miRNA miRNA MGP_C3HHeJ_T0081302.1 MGP_C3HHeJ_G0031372.1 mouse_genomes_project 7 10972888 11012613 + MGP_C3HHeJ_P0081302 Pla2g4c protein_coding protein_coding MGP_C3HHeJ_T0081303.1 MGP_C3HHeJ_G0031372.1 mouse_genomes_project 7 10973900 11013925 + MGP_C3HHeJ_P0081303 Pla2g4c protein_coding protein_coding MGP_C3HHeJ_T0081304.1 MGP_C3HHeJ_G0031372.1 mouse_genomes_project 7 10978408 10979757 + Pla2g4c protein_coding processed_transcript MGP_C3HHeJ_T0081305.1 MGP_C3HHeJ_G0031372.1 mouse_genomes_project 7 10978990 11013929 + MGP_C3HHeJ_P0081305 Pla2g4c protein_coding protein_coding MGP_C3HHeJ_T0010775.1 MGP_C3HHeJ_G0008908.1 mouse_genomes_project 7 45591239 45591312 - Mir7053 miRNA miRNA MGP_C3HHeJ_T0086810.1 MGP_C3HHeJ_G0032817.1 mouse_genomes_project 7 137945178 137961354 - MGP_C3HHeJ_P0086810 Tex36 protein_coding protein_coding MGP_C3HHeJ_T0002236.1 MGP_C3HHeJ_G0002156.1 mouse_genomes_project 7 81840825 81842988 + TEC TEC MGP_C3HHeJ_T0081492.1 MGP_C3HHeJ_G0031435.1 mouse_genomes_project 7 16138630 16145088 + MGP_C3HHeJ_P0081492 Ceacam11 protein_coding protein_coding MGP_C3HHeJ_T0081094.1 MGP_C3HHeJ_G0031278.1 mouse_genomes_project 7 2032251 2035231 + MGP_C3HHeJ_P0081094 Zfp524 protein_coding protein_coding MGP_C3HHeJ_T0005186.1 MGP_C3HHeJ_G0004399.1 mouse_genomes_project 7 100496203 100544565 - Rsf1os1 antisense antisense MGP_C3HHeJ_T0082430.1 MGP_C3HHeJ_G0031693.1 mouse_genomes_project 7 29211695 29229222 + MGP_C3HHeJ_P0082430 Zfp420 protein_coding protein_coding MGP_C3HHeJ_T0082431.1 MGP_C3HHeJ_G0031693.1 mouse_genomes_project 7 29211720 29213331 + Zfp420 protein_coding retained_intron MGP_C3HHeJ_T0082432.1 MGP_C3HHeJ_G0031693.1 mouse_genomes_project 7 29211727 29230009 + Zfp420 protein_coding processed_transcript MGP_C3HHeJ_T0082433.1 MGP_C3HHeJ_G0031693.1 mouse_genomes_project 7 29211757 29229544 + MGP_C3HHeJ_P0082433 Zfp420 protein_coding protein_coding MGP_C3HHeJ_T0082434.1 MGP_C3HHeJ_G0031693.1 mouse_genomes_project 7 29225236 29227253 + Zfp420 protein_coding retained_intron MGP_C3HHeJ_T0002276.1 MGP_C3HHeJ_G0002196.1 mouse_genomes_project 7 131974007 131974716 + TEC TEC MGP_C3HHeJ_T0083580.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47642211 47843246 - MGP_C3HHeJ_P0083580 Sergef protein_coding protein_coding MGP_C3HHeJ_T0083581.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47642264 47802995 - Sergef protein_coding processed_transcript MGP_C3HHeJ_T0083582.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47642517 47814541 - Sergef protein_coding processed_transcript MGP_C3HHeJ_T0083583.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47710764 47843211 - MGP_C3HHeJ_P0083583 Sergef protein_coding unknown_likely_coding MGP_C3HHeJ_T0083584.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47834722 47838010 - Sergef protein_coding retained_intron MGP_C3HHeJ_T0083585.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47834744 47843070 - MGP_C3HHeJ_P0083585 Sergef protein_coding protein_coding MGP_C3HHeJ_T0083586.1 MGP_C3HHeJ_G0031971.1 mouse_genomes_project 7 47834758 47843019 - Sergef protein_coding processed_transcript MGP_C3HHeJ_T0010765.1 MGP_C3HHeJ_G0008898.1 mouse_genomes_project 7 28350101 28350160 - Mir1963 miRNA miRNA MGP_C3HHeJ_T0085128.1 MGP_C3HHeJ_G0032394.1 mouse_genomes_project 7 107346383 107347328 - MGP_C3HHeJ_P0085128 protein_coding protein_coding MGP_C3HHeJ_T0087519.1 MGP_C3HHeJ_G0032991.1 mouse_genomes_project 7 149806433 149826007 + MGP_C3HHeJ_P0087519 Oraov1 protein_coding protein_coding MGP_C3HHeJ_T0087520.1 MGP_C3HHeJ_G0032991.1 mouse_genomes_project 7 149806469 149813785 + MGP_C3HHeJ_P0087520 Oraov1 protein_coding protein_coding MGP_C3HHeJ_T0087521.1 MGP_C3HHeJ_G0032991.1 mouse_genomes_project 7 149806505 149809036 + Oraov1 protein_coding retained_intron MGP_C3HHeJ_T0087522.1 MGP_C3HHeJ_G0032991.1 mouse_genomes_project 7 149806507 149807792 + Oraov1 protein_coding processed_transcript MGP_C3HHeJ_T0087523.1 MGP_C3HHeJ_G0032991.1 mouse_genomes_project 7 149806514 149824757 + MGP_C3HHeJ_P0087523 Oraov1 protein_coding protein_coding MGP_C3HHeJ_T0087524.1 MGP_C3HHeJ_G0032991.1 mouse_genomes_project 7 149807470 149812480 + Oraov1 protein_coding retained_intron MGP_C3HHeJ_T0087028.1 MGP_C3HHeJ_G0032891.1 mouse_genomes_project 7 145476695 145479909 + MGP_C3HHeJ_P0087028 Odf3 protein_coding protein_coding MGP_C3HHeJ_T0087029.1 MGP_C3HHeJ_G0032891.1 mouse_genomes_project 7 145476713 145479899 + MGP_C3HHeJ_P0087029 Odf3 protein_coding protein_coding MGP_C3HHeJ_T0087030.1 MGP_C3HHeJ_G0032891.1 mouse_genomes_project 7 145476714 145479902 + Odf3 protein_coding retained_intron MGP_C3HHeJ_T0084335.1 MGP_C3HHeJ_G0032125.1 mouse_genomes_project 7 83372678 83374843 - Nmb protein_coding retained_intron MGP_C3HHeJ_T0084336.1 MGP_C3HHeJ_G0032125.1 mouse_genomes_project 7 83372679 83375526 - MGP_C3HHeJ_P0084336 Nmb protein_coding protein_coding MGP_C3HHeJ_T0084337.1 MGP_C3HHeJ_G0032125.1 mouse_genomes_project 7 83372685 83374824 - Nmb protein_coding retained_intron MGP_C3HHeJ_T0084338.1 MGP_C3HHeJ_G0032125.1 mouse_genomes_project 7 83372685 83375510 - MGP_C3HHeJ_P0084338 Nmb protein_coding protein_coding MGP_C3HHeJ_T0085382.1 MGP_C3HHeJ_G0032523.1 mouse_genomes_project 7 112034605 112035538 + MGP_C3HHeJ_P0085382 Olfr508 protein_coding protein_coding MGP_C3HHeJ_T0008895.1 MGP_C3HHeJ_G0007165.1 mouse_genomes_project 7 103507516 103535250 - Gm10603 lincRNA lincRNA MGP_C3HHeJ_T0008896.1 MGP_C3HHeJ_G0007165.1 mouse_genomes_project 7 103520187 103528004 - Gm10603 lincRNA lincRNA MGP_C3HHeJ_T0008897.1 MGP_C3HHeJ_G0007165.1 mouse_genomes_project 7 103524327 103535255 - Gm10603 lincRNA lincRNA MGP_C3HHeJ_T0100854.1 MGP_C3HHeJ_G0039048.1 mouse_genomes_project 7 113508878 113509062 + Snora23 snoRNA snoRNA MGP_C3HHeJ_T0008832.1 MGP_C3HHeJ_G0007125.1 mouse_genomes_project 7 75358637 75397966 - Gm30075 lincRNA lincRNA MGP_C3HHeJ_T0083814.1 MGP_C3HHeJ_G0032028.1 mouse_genomes_project 7 61323314 61348924 - MGP_C3HHeJ_P0083814 Snrpn protein_coding protein_coding MGP_C3HHeJ_T0083815.1 MGP_C3HHeJ_G0032028.1 mouse_genomes_project 7 61323321 61505870 - MGP_C3HHeJ_P0083815 Snrpn protein_coding protein_coding MGP_C3HHeJ_T0085330.1 MGP_C3HHeJ_G0032478.1 mouse_genomes_project 7 110270614 110271421 - MGP_C3HHeJ_P0085330 protein_coding protein_coding MGP_C3HHeJ_T0018207.1 MGP_C3HHeJ_G0015460.1 mouse_genomes_project 7 146042929 146048869 - B230206H07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018208.1 MGP_C3HHeJ_G0015460.1 mouse_genomes_project 7 146042966 146048897 - B230206H07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100842.1 MGP_C3HHeJ_G0039036.1 mouse_genomes_project 7 95915009 95915135 - Gm25860 snoRNA snoRNA MGP_C3HHeJ_T0015604.1 MGP_C3HHeJ_G0013708.1 mouse_genomes_project 7 45320943 45321892 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081520.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17220574 17221086 - Ccdc61 protein_coding retained_intron MGP_C3HHeJ_T0081521.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17220574 17243627 - MGP_C3HHeJ_P0081521 Ccdc61 protein_coding protein_coding MGP_C3HHeJ_T0081522.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17220575 17222265 - MGP_C3HHeJ_P0081522 Ccdc61 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081523.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17220575 17243610 - MGP_C3HHeJ_P0081523 Ccdc61 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081524.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17220696 17223680 - MGP_C3HHeJ_P0081524 Ccdc61 protein_coding protein_coding MGP_C3HHeJ_T0081525.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17221337 17222071 - Ccdc61 protein_coding retained_intron MGP_C3HHeJ_T0081526.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17229376 17243610 - MGP_C3HHeJ_P0081526 Ccdc61 protein_coding protein_coding MGP_C3HHeJ_T0081527.1 MGP_C3HHeJ_G0031450.1 mouse_genomes_project 7 17230808 17243601 - MGP_C3HHeJ_P0081527 Ccdc61 protein_coding protein_coding MGP_C3HHeJ_T0102223.1 MGP_C3HHeJ_G0040186.1 mouse_genomes_project 7 41473639 41478259 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081200.1 MGP_C3HHeJ_G0031339.1 mouse_genomes_project 7 9438224 9439199 - MGP_C3HHeJ_P0081200 Vmn1r76 protein_coding protein_coding MGP_C3HHeJ_T0080859.1 MGP_C3HHeJ_G0031229.1 mouse_genomes_project 7 544166 552160 - MGP_C3HHeJ_P0080859 Leng1 protein_coding protein_coding MGP_C3HHeJ_T0082142.1 MGP_C3HHeJ_G0031621.1 mouse_genomes_project 7 26610273 26618182 + MGP_C3HHeJ_P0082142 Hipk4 protein_coding protein_coding MGP_C3HHeJ_T0082143.1 MGP_C3HHeJ_G0031621.1 mouse_genomes_project 7 26614065 26618177 + MGP_C3HHeJ_P0082143 Hipk4 protein_coding protein_coding MGP_C3HHeJ_T0085052.1 MGP_C3HHeJ_G0032323.1 mouse_genomes_project 7 105904581 105914314 - MGP_C3HHeJ_P0085052 Trim68 protein_coding protein_coding MGP_C3HHeJ_T0002283.1 MGP_C3HHeJ_G0002203.1 mouse_genomes_project 7 148095041 148098961 + TEC TEC MGP_C3HHeJ_T0086409.1 MGP_C3HHeJ_G0032740.1 mouse_genomes_project 7 131576245 131625656 + MGP_C3HHeJ_P0086409 Gm42715 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086411.1 MGP_C3HHeJ_G0032740.1 mouse_genomes_project 7 131618910 131621814 + MGP_C3HHeJ_P0086411 Gm42715 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100845.1 MGP_C3HHeJ_G0039039.1 mouse_genomes_project 7 102451992 102452137 - Snord15b snoRNA snoRNA MGP_C3HHeJ_T0081967.1 MGP_C3HHeJ_G0031576.1 mouse_genomes_project 7 24516497 24518269 + MGP_C3HHeJ_P0081967 B3gnt8 protein_coding protein_coding MGP_C3HHeJ_T0081968.1 MGP_C3HHeJ_G0031576.1 mouse_genomes_project 7 24517480 24524944 + MGP_C3HHeJ_P0081968 B3gnt8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081969.1 MGP_C3HHeJ_G0031576.1 mouse_genomes_project 7 24517481 24519336 + MGP_C3HHeJ_P0081969 B3gnt8 protein_coding protein_coding MGP_C3HHeJ_T0081970.1 MGP_C3HHeJ_G0031576.1 mouse_genomes_project 7 24517485 24519329 + B3gnt8 protein_coding retained_intron MGP_C3HHeJ_T0085087.1 MGP_C3HHeJ_G0032355.1 mouse_genomes_project 7 106700715 106701660 - MGP_C3HHeJ_P0085087 protein_coding protein_coding MGP_C3HHeJ_T0015522.1 MGP_C3HHeJ_G0013626.1 mouse_genomes_project 7 14635875 14636283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002209.1 MGP_C3HHeJ_G0002130.1 mouse_genomes_project 7 66411336 66411808 + TEC TEC MGP_C3HHeJ_T0002194.1 MGP_C3HHeJ_G0002115.1 mouse_genomes_project 7 56622441 56624615 + TEC TEC MGP_C3HHeJ_T0015656.1 MGP_C3HHeJ_G0013760.1 mouse_genomes_project 7 87422600 87422876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008807.1 MGP_C3HHeJ_G0007106.1 mouse_genomes_project 7 69751011 69769338 - 4833412C05Rik lincRNA lincRNA MGP_C3HHeJ_T0102294.1 MGP_C3HHeJ_G0040257.1 mouse_genomes_project 7 92439179 92439392 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015548.1 MGP_C3HHeJ_G0013652.1 mouse_genomes_project 7 24861062 24861231 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081218.1 MGP_C3HHeJ_G0031351.1 mouse_genomes_project 7 10324226 10336770 - MGP_C3HHeJ_P0081218 Zscan18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085364.1 MGP_C3HHeJ_G0032505.1 mouse_genomes_project 7 111416890 111417919 - MGP_C3HHeJ_P0085364 Olfr480 protein_coding protein_coding MGP_C3HHeJ_T0005111.1 MGP_C3HHeJ_G0004345.1 mouse_genomes_project 7 29907325 29914333 + Arhgap33os antisense antisense MGP_C3HHeJ_T0086317.1 MGP_C3HHeJ_G0032720.1 mouse_genomes_project 7 131142922 131148542 - MGP_C3HHeJ_P0086317 Spn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086318.1 MGP_C3HHeJ_G0032720.1 mouse_genomes_project 7 131144160 131147294 - MGP_C3HHeJ_P0086318 Spn protein_coding protein_coding MGP_C3HHeJ_T0086319.1 MGP_C3HHeJ_G0032720.1 mouse_genomes_project 7 131144392 131148551 - MGP_C3HHeJ_P0086319 Spn protein_coding protein_coding MGP_C3HHeJ_T0082500.1 MGP_C3HHeJ_G0031713.1 mouse_genomes_project 7 29663857 29674001 + MGP_C3HHeJ_P0082500 protein_coding protein_coding MGP_C3HHeJ_T0087483.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 148861291 149292357 + MGP_C3HHeJ_P0087483 Shank2 protein_coding protein_coding MGP_C3HHeJ_T0087484.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 148891667 148996573 + MGP_C3HHeJ_P0087484 Shank2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087485.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 148891667 148996431 + MGP_C3HHeJ_P0087485 Shank2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087486.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 149042945 149292357 + MGP_C3HHeJ_P0087486 Shank2 protein_coding protein_coding MGP_C3HHeJ_T0087487.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 149151792 149290544 + MGP_C3HHeJ_P0087487 Shank2 protein_coding protein_coding MGP_C3HHeJ_T0087488.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 149151846 149292345 + Shank2 protein_coding retained_intron MGP_C3HHeJ_T0087489.1 MGP_C3HHeJ_G0032983.1 mouse_genomes_project 7 149285635 149288480 + Shank2 protein_coding processed_transcript MGP_C3HHeJ_T0102155.1 MGP_C3HHeJ_G0040119.1 mouse_genomes_project 7 9127965 9128887 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085091.1 MGP_C3HHeJ_G0032359.1 mouse_genomes_project 7 106747232 106748192 - MGP_C3HHeJ_P0085091 Olfr609 protein_coding protein_coding MGP_C3HHeJ_T0087301.1 MGP_C3HHeJ_G0032951.1 mouse_genomes_project 7 147068336 147069242 + MGP_C3HHeJ_P0087301 protein_coding protein_coding MGP_C3HHeJ_T0102308.1 MGP_C3HHeJ_G0040271.1 mouse_genomes_project 7 107267167 107268054 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085073.1 MGP_C3HHeJ_G0032342.1 mouse_genomes_project 7 106309894 106311590 + MGP_C3HHeJ_P0085073 Olfr584 protein_coding protein_coding MGP_C3HHeJ_T0081725.1 MGP_C3HHeJ_G0031507.1 mouse_genomes_project 7 18380800 18407076 + MGP_C3HHeJ_P0081725 Ceacam20 protein_coding protein_coding MGP_C3HHeJ_T0002264.1 MGP_C3HHeJ_G0002184.1 mouse_genomes_project 7 126835585 126836578 - TEC TEC MGP_C3HHeJ_T0086075.1 MGP_C3HHeJ_G0032680.1 mouse_genomes_project 7 130455875 130459989 + MGP_C3HHeJ_P0086075 Tufm protein_coding protein_coding MGP_C3HHeJ_T0086077.1 MGP_C3HHeJ_G0032680.1 mouse_genomes_project 7 130455892 130459993 + MGP_C3HHeJ_P0086077 Tufm protein_coding protein_coding MGP_C3HHeJ_T0086078.1 MGP_C3HHeJ_G0032680.1 mouse_genomes_project 7 130456143 130457672 + Tufm protein_coding processed_transcript MGP_C3HHeJ_T0086079.1 MGP_C3HHeJ_G0032680.1 mouse_genomes_project 7 130457128 130457848 + Tufm protein_coding retained_intron MGP_C3HHeJ_T0015676.1 MGP_C3HHeJ_G0013780.1 mouse_genomes_project 7 101367467 101367781 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010791.1 MGP_C3HHeJ_G0008924.1 mouse_genomes_project 7 63423444 63423524 - Gm23490 miRNA miRNA MGP_C3HHeJ_T0085320.1 MGP_C3HHeJ_G0032469.1 mouse_genomes_project 7 110131806 110132757 - MGP_C3HHeJ_P0085320 Olfr699 protein_coding protein_coding MGP_C3HHeJ_T0005075.1 MGP_C3HHeJ_G0004320.1 mouse_genomes_project 7 4032180 4052857 - Zim3 antisense antisense MGP_C3HHeJ_T0005076.1 MGP_C3HHeJ_G0004320.1 mouse_genomes_project 7 4039797 4051669 - Zim3 antisense antisense MGP_C3HHeJ_T0005077.1 MGP_C3HHeJ_G0004320.1 mouse_genomes_project 7 4052495 4053614 - Zim3 antisense antisense MGP_C3HHeJ_T0084544.1 MGP_C3HHeJ_G0032202.1 mouse_genomes_project 7 92656522 92657609 + MGP_C3HHeJ_P0084544 protein_coding protein_coding MGP_C3HHeJ_T0098180.1 MGP_C3HHeJ_G0036392.1 mouse_genomes_project 7 99754608 99754701 - Gm25712 rRNA rRNA MGP_C3HHeJ_T0002201.1 MGP_C3HHeJ_G0002122.1 mouse_genomes_project 7 59390313 59392552 + TEC TEC MGP_C3HHeJ_T0083245.1 MGP_C3HHeJ_G0031882.1 mouse_genomes_project 7 45773789 45785312 + MGP_C3HHeJ_P0083245 Izumo2 protein_coding protein_coding MGP_C3HHeJ_T0010747.1 MGP_C3HHeJ_G0008880.1 mouse_genomes_project 7 3880894 3880978 + Mir3099 miRNA miRNA MGP_C3HHeJ_T0002210.1 MGP_C3HHeJ_G0002131.1 mouse_genomes_project 7 67248253 67248664 - TEC TEC MGP_C3HHeJ_T0008952.1 MGP_C3HHeJ_G0007197.1 mouse_genomes_project 7 132069076 132071388 - Gm26690 lincRNA lincRNA MGP_C3HHeJ_T0015644.1 MGP_C3HHeJ_G0013748.1 mouse_genomes_project 7 77638366 77638645 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015688.1 MGP_C3HHeJ_G0013792.1 mouse_genomes_project 7 106377969 106378632 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083109.1 MGP_C3HHeJ_G0031849.1 mouse_genomes_project 7 44819627 44825737 + MGP_C3HHeJ_P0083109 Klk8 protein_coding protein_coding MGP_C3HHeJ_T0083110.1 MGP_C3HHeJ_G0031849.1 mouse_genomes_project 7 44819646 44825586 + MGP_C3HHeJ_P0083110 Klk8 protein_coding protein_coding MGP_C3HHeJ_T0083111.1 MGP_C3HHeJ_G0031849.1 mouse_genomes_project 7 44823780 44825741 + Klk8 protein_coding retained_intron MGP_C3HHeJ_T0082485.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29612682 29613736 + MGP_C3HHeJ_P0082485 Polr2i protein_coding protein_coding MGP_C3HHeJ_T0082486.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29612682 29613737 + MGP_C3HHeJ_P0082486 Polr2i protein_coding protein_coding MGP_C3HHeJ_T0082487.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29612692 29613734 + Polr2i protein_coding retained_intron MGP_C3HHeJ_T0082488.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29612696 29613746 + MGP_C3HHeJ_P0082488 Polr2i protein_coding protein_coding MGP_C3HHeJ_T0082489.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29612700 29613676 + Polr2i protein_coding retained_intron MGP_C3HHeJ_T0082490.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29612953 29613738 + Polr2i protein_coding processed_transcript MGP_C3HHeJ_T0082491.1 MGP_C3HHeJ_G0031710.1 mouse_genomes_project 7 29613282 29613733 + Polr2i protein_coding retained_intron MGP_C3HHeJ_T0085988.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129568200 129640725 - MGP_C3HHeJ_P0085988 Gtf3c1 protein_coding protein_coding MGP_C3HHeJ_T0085989.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129568200 129640622 - MGP_C3HHeJ_P0085989 Gtf3c1 protein_coding protein_coding MGP_C3HHeJ_T0085990.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129571429 129577224 - Gtf3c1 protein_coding retained_intron MGP_C3HHeJ_T0085991.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129574776 129583147 - MGP_C3HHeJ_P0085991 Gtf3c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085992.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129590643 129640705 - Gtf3c1 protein_coding retained_intron MGP_C3HHeJ_T0085993.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129590955 129640687 - MGP_C3HHeJ_P0085993 Gtf3c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085994.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129591075 129601944 - MGP_C3HHeJ_P0085994 Gtf3c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085995.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129600594 129602711 - Gtf3c1 protein_coding retained_intron MGP_C3HHeJ_T0085996.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129624164 129632442 - Gtf3c1 protein_coding retained_intron MGP_C3HHeJ_T0085997.1 MGP_C3HHeJ_G0032668.1 mouse_genomes_project 7 129626173 129639481 - MGP_C3HHeJ_P0085997 Gtf3c1 protein_coding protein_coding MGP_C3HHeJ_T0081485.1 MGP_C3HHeJ_G0031430.1 mouse_genomes_project 7 15097427 15119245 + Psg16 protein_coding retained_intron MGP_C3HHeJ_T0081486.1 MGP_C3HHeJ_G0031430.1 mouse_genomes_project 7 15111715 15117734 + MGP_C3HHeJ_P0081486 Psg16 protein_coding protein_coding MGP_C3HHeJ_T0081487.1 MGP_C3HHeJ_G0031430.1 mouse_genomes_project 7 15114217 15122204 + MGP_C3HHeJ_P0081487 Psg16 protein_coding protein_coding MGP_C3HHeJ_T0084935.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105020854 105032981 - MGP_C3HHeJ_P0084935 Folr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084936.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105021604 105032341 - MGP_C3HHeJ_P0084936 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084937.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105021614 105033493 - MGP_C3HHeJ_P0084937 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084938.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105021673 105033565 - MGP_C3HHeJ_P0084938 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084939.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105021906 105032114 - MGP_C3HHeJ_P0084939 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084940.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105026800 105033567 - MGP_C3HHeJ_P0084940 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084941.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105026802 105031812 - MGP_C3HHeJ_P0084941 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084942.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105026805 105033566 - MGP_C3HHeJ_P0084942 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084943.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105026838 105031460 - MGP_C3HHeJ_P0084943 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084944.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105026877 105032112 - MGP_C3HHeJ_P0084944 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084945.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105026955 105033363 - MGP_C3HHeJ_P0084945 Folr1 protein_coding protein_coding MGP_C3HHeJ_T0084946.1 MGP_C3HHeJ_G0032291.1 mouse_genomes_project 7 105031257 105032887 - Folr1 protein_coding processed_transcript MGP_C3HHeJ_T0102156.1 MGP_C3HHeJ_G0040120.1 mouse_genomes_project 7 9262246 9262424 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084081.1 MGP_C3HHeJ_G0032083.1 mouse_genomes_project 7 81131922 81141788 + MGP_C3HHeJ_P0084081 Mrps11 protein_coding protein_coding MGP_C3HHeJ_T0084082.1 MGP_C3HHeJ_G0032083.1 mouse_genomes_project 7 81132116 81140040 + Mrps11 protein_coding retained_intron MGP_C3HHeJ_T0084083.1 MGP_C3HHeJ_G0032083.1 mouse_genomes_project 7 81132158 81138217 + Mrps11 protein_coding retained_intron MGP_C3HHeJ_T0084084.1 MGP_C3HHeJ_G0032083.1 mouse_genomes_project 7 81132159 81141788 + MGP_C3HHeJ_P0084084 Mrps11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084085.1 MGP_C3HHeJ_G0032083.1 mouse_genomes_project 7 81132173 81139727 + Mrps11 protein_coding retained_intron MGP_C3HHeJ_T0084086.1 MGP_C3HHeJ_G0032083.1 mouse_genomes_project 7 81132174 81138109 + Mrps11 protein_coding retained_intron MGP_C3HHeJ_T0008846.1 MGP_C3HHeJ_G0007136.1 mouse_genomes_project 7 77255222 77295540 + Gm44904 lincRNA lincRNA MGP_C3HHeJ_T0099605.1 MGP_C3HHeJ_G0037799.1 mouse_genomes_project 7 121954987 121955092 + Gm23229 snRNA snRNA MGP_C3HHeJ_T0102217.1 MGP_C3HHeJ_G0040180.1 mouse_genomes_project 7 33890960 33892237 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081842.1 MGP_C3HHeJ_G0031549.1 mouse_genomes_project 7 23645343 23650339 - MGP_C3HHeJ_P0081842 Lypd4 protein_coding protein_coding MGP_C3HHeJ_T0081843.1 MGP_C3HHeJ_G0031549.1 mouse_genomes_project 7 23646048 23650130 - MGP_C3HHeJ_P0081843 Lypd4 protein_coding protein_coding MGP_C3HHeJ_T0002216.1 MGP_C3HHeJ_G0002137.1 mouse_genomes_project 7 75709350 75710810 - TEC TEC MGP_C3HHeJ_T0085193.1 MGP_C3HHeJ_G0032430.1 mouse_genomes_project 7 108178319 108179258 - MGP_C3HHeJ_P0085193 Olfr670 protein_coding protein_coding MGP_C3HHeJ_T0010798.1 MGP_C3HHeJ_G0008931.1 mouse_genomes_project 7 63521816 63521879 - Mir344b miRNA miRNA MGP_C3HHeJ_T0083119.1 MGP_C3HHeJ_G0031853.1 mouse_genomes_project 7 44910000 44914645 + MGP_C3HHeJ_P0083119 Klk4 protein_coding protein_coding MGP_C3HHeJ_T0008791.1 MGP_C3HHeJ_G0007093.1 mouse_genomes_project 7 53308741 53330674 - Gm29296 lincRNA lincRNA MGP_C3HHeJ_T0085415.1 MGP_C3HHeJ_G0032540.1 mouse_genomes_project 7 112956640 112959860 + MGP_C3HHeJ_P0085415 Rpl27a protein_coding protein_coding MGP_C3HHeJ_T0085416.1 MGP_C3HHeJ_G0032540.1 mouse_genomes_project 7 112956689 112958646 + Rpl27a protein_coding retained_intron MGP_C3HHeJ_T0085417.1 MGP_C3HHeJ_G0032540.1 mouse_genomes_project 7 112956692 112957673 + Rpl27a protein_coding retained_intron MGP_C3HHeJ_T0085418.1 MGP_C3HHeJ_G0032540.1 mouse_genomes_project 7 112956706 112959259 + Rpl27a protein_coding retained_intron MGP_C3HHeJ_T0085419.1 MGP_C3HHeJ_G0032540.1 mouse_genomes_project 7 112956713 112958091 + MGP_C3HHeJ_P0085419 Rpl27a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085420.1 MGP_C3HHeJ_G0032540.1 mouse_genomes_project 7 112956763 112957432 + Rpl27a protein_coding retained_intron MGP_C3HHeJ_T0102288.1 MGP_C3HHeJ_G0040251.1 mouse_genomes_project 7 88760925 88761865 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008761.1 MGP_C3HHeJ_G0007072.1 mouse_genomes_project 7 37395405 37396561 + Gm28075 lincRNA lincRNA MGP_C3HHeJ_T0018209.1 MGP_C3HHeJ_G0015461.1 mouse_genomes_project 7 146145893 146149914 - Gm10575 processed_transcript processed_transcript MGP_C3HHeJ_T0018210.1 MGP_C3HHeJ_G0015461.1 mouse_genomes_project 7 146145895 146152177 - Gm10575 processed_transcript processed_transcript MGP_C3HHeJ_T0018211.1 MGP_C3HHeJ_G0015461.1 mouse_genomes_project 7 146146332 146148315 - Gm10575 processed_transcript processed_transcript MGP_C3HHeJ_T0083083.1 MGP_C3HHeJ_G0031837.1 mouse_genomes_project 7 44564862 44578068 + MGP_C3HHeJ_P0083083 Zfp658 protein_coding protein_coding MGP_C3HHeJ_T0083084.1 MGP_C3HHeJ_G0031837.1 mouse_genomes_project 7 44567390 44577573 + MGP_C3HHeJ_P0083084 Zfp658 protein_coding protein_coding MGP_C3HHeJ_T0002247.1 MGP_C3HHeJ_G0002167.1 mouse_genomes_project 7 84038561 84040778 - TEC TEC MGP_C3HHeJ_T0015694.1 MGP_C3HHeJ_G0013798.1 mouse_genomes_project 7 110515217 110516664 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081306.1 MGP_C3HHeJ_G0031373.1 mouse_genomes_project 7 11050616 11061232 + MGP_C3HHeJ_P0081306 Cabp5 protein_coding protein_coding MGP_C3HHeJ_T0081307.1 MGP_C3HHeJ_G0031373.1 mouse_genomes_project 7 11050779 11058775 + MGP_C3HHeJ_P0081307 Cabp5 protein_coding protein_coding MGP_C3HHeJ_T0081308.1 MGP_C3HHeJ_G0031373.1 mouse_genomes_project 7 11050792 11058026 + MGP_C3HHeJ_P0081308 Cabp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005112.1 MGP_C3HHeJ_G0004346.1 mouse_genomes_project 7 29960353 29960973 - antisense antisense MGP_C3HHeJ_T0082233.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27537507 27550561 - MGP_C3HHeJ_P0082233 Plekhg2 protein_coding protein_coding MGP_C3HHeJ_T0082234.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27537508 27550905 - Plekhg2 protein_coding retained_intron MGP_C3HHeJ_T0082235.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27537508 27541637 - Plekhg2 protein_coding retained_intron MGP_C3HHeJ_T0082236.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27537508 27550822 - MGP_C3HHeJ_P0082236 Plekhg2 protein_coding protein_coding MGP_C3HHeJ_T0082237.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27537508 27549902 - MGP_C3HHeJ_P0082237 Plekhg2 protein_coding protein_coding MGP_C3HHeJ_T0082238.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27538995 27550927 - MGP_C3HHeJ_P0082238 Plekhg2 protein_coding protein_coding MGP_C3HHeJ_T0082239.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27542307 27543796 - Plekhg2 protein_coding retained_intron MGP_C3HHeJ_T0082240.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27546713 27550055 - MGP_C3HHeJ_P0082240 Plekhg2 protein_coding protein_coding MGP_C3HHeJ_T0082241.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27548408 27550408 - MGP_C3HHeJ_P0082241 Plekhg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082242.1 MGP_C3HHeJ_G0031648.1 mouse_genomes_project 7 27548743 27549836 - MGP_C3HHeJ_P0082242 Plekhg2 protein_coding protein_coding MGP_C3HHeJ_T0102196.1 MGP_C3HHeJ_G0040160.1 mouse_genomes_project 7 15218665 15219656 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015533.1 MGP_C3HHeJ_G0013637.1 mouse_genomes_project 7 22751962 22752271 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086143.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130688606 130693054 - MGP_C3HHeJ_P0086143 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086144.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130688606 130693650 - MGP_C3HHeJ_P0086144 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086145.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130688714 130692007 - MGP_C3HHeJ_P0086145 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086146.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130689144 130690061 - Coro1a protein_coding retained_intron MGP_C3HHeJ_T0086147.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130689188 130690094 - Coro1a protein_coding retained_intron MGP_C3HHeJ_T0086148.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130689824 130690929 - Coro1a protein_coding retained_intron MGP_C3HHeJ_T0086149.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130689825 130692008 - MGP_C3HHeJ_P0086149 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086150.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130690163 130691306 - Coro1a protein_coding retained_intron MGP_C3HHeJ_T0086151.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130690180 130693588 - MGP_C3HHeJ_P0086151 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086152.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130690724 130693381 - MGP_C3HHeJ_P0086152 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086153.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130690735 130696463 - MGP_C3HHeJ_P0086153 Coro1a protein_coding protein_coding MGP_C3HHeJ_T0086154.1 MGP_C3HHeJ_G0032692.1 mouse_genomes_project 7 130691665 130693587 - Coro1a protein_coding retained_intron MGP_C3HHeJ_T0085892.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125954439 125981139 - MGP_C3HHeJ_P0085892 Palb2 protein_coding protein_coding MGP_C3HHeJ_T0085893.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125954439 125981176 - MGP_C3HHeJ_P0085893 Palb2 protein_coding protein_coding MGP_C3HHeJ_T0085894.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125954439 125981074 - MGP_C3HHeJ_P0085894 Palb2 protein_coding protein_coding MGP_C3HHeJ_T0085895.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125954442 125959218 - Palb2 protein_coding retained_intron MGP_C3HHeJ_T0085896.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125954444 125972675 - MGP_C3HHeJ_P0085896 Palb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085897.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125958749 125981147 - MGP_C3HHeJ_P0085897 Palb2 protein_coding protein_coding MGP_C3HHeJ_T0085898.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125958749 125981118 - MGP_C3HHeJ_P0085898 Palb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085899.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125973811 125981149 - Palb2 protein_coding retained_intron MGP_C3HHeJ_T0085900.1 MGP_C3HHeJ_G0032649.1 mouse_genomes_project 7 125979070 125981215 - Palb2 protein_coding retained_intron MGP_C3HHeJ_T0087454.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148510015 148515815 - Osbpl5 protein_coding retained_intron MGP_C3HHeJ_T0087455.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148510015 148566892 - MGP_C3HHeJ_P0087455 Osbpl5 protein_coding protein_coding MGP_C3HHeJ_T0087456.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148510015 148568514 - MGP_C3HHeJ_P0087456 Osbpl5 protein_coding protein_coding MGP_C3HHeJ_T0087457.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148515517 148516341 - Osbpl5 protein_coding retained_intron MGP_C3HHeJ_T0087458.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148529617 148531682 - Osbpl5 protein_coding retained_intron MGP_C3HHeJ_T0087459.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148535613 148590759 - MGP_C3HHeJ_P0087459 Osbpl5 protein_coding protein_coding MGP_C3HHeJ_T0087460.1 MGP_C3HHeJ_G0032977.1 mouse_genomes_project 7 148540058 148566850 - Osbpl5 protein_coding processed_transcript MGP_C3HHeJ_T0082227.1 MGP_C3HHeJ_G0031646.1 mouse_genomes_project 7 27488082 27513641 - MGP_C3HHeJ_P0082227 Supt5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082228.1 MGP_C3HHeJ_G0031646.1 mouse_genomes_project 7 27488091 27513597 - MGP_C3HHeJ_P0082228 Supt5 protein_coding protein_coding MGP_C3HHeJ_T0081779.1 MGP_C3HHeJ_G0031531.1 mouse_genomes_project 7 23074444 23092754 + MGP_C3HHeJ_P0081779 Kcnn4 protein_coding protein_coding MGP_C3HHeJ_T0081780.1 MGP_C3HHeJ_G0031531.1 mouse_genomes_project 7 23074480 23092750 + MGP_C3HHeJ_P0081780 Kcnn4 protein_coding protein_coding MGP_C3HHeJ_T0081781.1 MGP_C3HHeJ_G0031531.1 mouse_genomes_project 7 23074519 23092309 + MGP_C3HHeJ_P0081781 Kcnn4 protein_coding protein_coding MGP_C3HHeJ_T0081782.1 MGP_C3HHeJ_G0031531.1 mouse_genomes_project 7 23074618 23092768 + MGP_C3HHeJ_P0081782 Kcnn4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081783.1 MGP_C3HHeJ_G0031531.1 mouse_genomes_project 7 23089376 23092339 + Kcnn4 protein_coding retained_intron MGP_C3HHeJ_T0081784.1 MGP_C3HHeJ_G0031531.1 mouse_genomes_project 7 23090604 23094278 + Kcnn4 protein_coding retained_intron MGP_C3HHeJ_T0082862.1 MGP_C3HHeJ_G0031784.1 mouse_genomes_project 7 35051658 35187996 + MGP_C3HHeJ_P0082862 Pepd protein_coding protein_coding MGP_C3HHeJ_T0082863.1 MGP_C3HHeJ_G0031784.1 mouse_genomes_project 7 35086338 35164987 + MGP_C3HHeJ_P0082863 Pepd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082864.1 MGP_C3HHeJ_G0031784.1 mouse_genomes_project 7 35112409 35184022 + Pepd protein_coding retained_intron MGP_C3HHeJ_T0082865.1 MGP_C3HHeJ_G0031784.1 mouse_genomes_project 7 35112636 35123921 + Pepd protein_coding retained_intron MGP_C3HHeJ_T0082866.1 MGP_C3HHeJ_G0031784.1 mouse_genomes_project 7 35183769 35187995 + Pepd protein_coding retained_intron MGP_C3HHeJ_T0082867.1 MGP_C3HHeJ_G0031784.1 mouse_genomes_project 7 35186477 35187822 + Pepd protein_coding retained_intron MGP_C3HHeJ_T0011582.1 MGP_C3HHeJ_G0009715.1 mouse_genomes_project 7 3916976 3917274 - Gm22649 misc_RNA misc_RNA MGP_C3HHeJ_T0081979.1 MGP_C3HHeJ_G0031579.1 mouse_genomes_project 7 24558736 24564991 - MGP_C3HHeJ_P0081979 Tmem91 protein_coding protein_coding MGP_C3HHeJ_T0081980.1 MGP_C3HHeJ_G0031579.1 mouse_genomes_project 7 24558739 24563298 - MGP_C3HHeJ_P0081980 Tmem91 protein_coding protein_coding MGP_C3HHeJ_T0081981.1 MGP_C3HHeJ_G0031579.1 mouse_genomes_project 7 24558839 24564915 - MGP_C3HHeJ_P0081981 Tmem91 protein_coding protein_coding MGP_C3HHeJ_T0081982.1 MGP_C3HHeJ_G0031579.1 mouse_genomes_project 7 24558839 24564872 - MGP_C3HHeJ_P0081982 Tmem91 protein_coding protein_coding MGP_C3HHeJ_T0081983.1 MGP_C3HHeJ_G0031579.1 mouse_genomes_project 7 24559641 24564944 - Tmem91 protein_coding retained_intron MGP_C3HHeJ_T0081984.1 MGP_C3HHeJ_G0031579.1 mouse_genomes_project 7 24561021 24564943 - Tmem91 protein_coding retained_intron MGP_C3HHeJ_T0102250.1 MGP_C3HHeJ_G0040213.1 mouse_genomes_project 7 49102140 49102627 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082326.1 MGP_C3HHeJ_G0031669.1 mouse_genomes_project 7 28117907 28119751 + MGP_C3HHeJ_P0082326 Lgals7 protein_coding protein_coding MGP_C3HHeJ_T0082327.1 MGP_C3HHeJ_G0031669.1 mouse_genomes_project 7 28118283 28120339 + MGP_C3HHeJ_P0082327 Lgals7 protein_coding protein_coding MGP_C3HHeJ_T0082328.1 MGP_C3HHeJ_G0031669.1 mouse_genomes_project 7 28118509 28119043 + Lgals7 protein_coding processed_transcript MGP_C3HHeJ_T0087471.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148658395 148686842 + MGP_C3HHeJ_P0087471 Dhcr7 protein_coding protein_coding MGP_C3HHeJ_T0087472.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148658395 148674043 + MGP_C3HHeJ_P0087472 Dhcr7 protein_coding protein_coding MGP_C3HHeJ_T0087473.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148666644 148686843 + MGP_C3HHeJ_P0087473 Dhcr7 protein_coding protein_coding MGP_C3HHeJ_T0087474.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148667095 148686843 + MGP_C3HHeJ_P0087474 Dhcr7 protein_coding protein_coding MGP_C3HHeJ_T0087475.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148667252 148682933 + MGP_C3HHeJ_P0087475 Dhcr7 protein_coding protein_coding MGP_C3HHeJ_T0087476.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148667256 148680510 + MGP_C3HHeJ_P0087476 Dhcr7 protein_coding protein_coding MGP_C3HHeJ_T0087477.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148667276 148675252 + Dhcr7 protein_coding processed_transcript MGP_C3HHeJ_T0087478.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148678292 148680663 + Dhcr7 protein_coding processed_transcript MGP_C3HHeJ_T0087479.1 MGP_C3HHeJ_G0032981.1 mouse_genomes_project 7 148678697 148684773 + Dhcr7 protein_coding processed_transcript MGP_C3HHeJ_T0085307.1 MGP_C3HHeJ_G0032461.1 mouse_genomes_project 7 109108197 109112639 - MGP_C3HHeJ_P0085307 Mrpl17 protein_coding protein_coding MGP_C3HHeJ_T0085308.1 MGP_C3HHeJ_G0032461.1 mouse_genomes_project 7 109111196 109112498 - MGP_C3HHeJ_P0085308 Mrpl17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085309.1 MGP_C3HHeJ_G0032461.1 mouse_genomes_project 7 109111219 109112536 - Mrpl17 protein_coding retained_intron MGP_C3HHeJ_T0085310.1 MGP_C3HHeJ_G0032461.1 mouse_genomes_project 7 109111304 109112539 - Mrpl17 protein_coding processed_transcript MGP_C3HHeJ_T0085311.1 MGP_C3HHeJ_G0032461.1 mouse_genomes_project 7 109111660 109112568 - MGP_C3HHeJ_P0085311 Mrpl17 protein_coding protein_coding MGP_C3HHeJ_T0002205.1 MGP_C3HHeJ_G0002126.1 mouse_genomes_project 7 66084563 66084716 + TEC TEC MGP_C3HHeJ_T0084868.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219643 104403678 + MGP_C3HHeJ_P0084868 Fchsd2 protein_coding protein_coding MGP_C3HHeJ_T0084869.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219644 104317707 + Fchsd2 protein_coding processed_transcript MGP_C3HHeJ_T0084870.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219649 104403701 + MGP_C3HHeJ_P0084870 Fchsd2 protein_coding protein_coding MGP_C3HHeJ_T0084871.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219673 104314990 + Fchsd2 protein_coding retained_intron MGP_C3HHeJ_T0084872.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219748 104305673 + Fchsd2 protein_coding processed_transcript MGP_C3HHeJ_T0084873.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219750 104253189 + Fchsd2 protein_coding retained_intron MGP_C3HHeJ_T0084874.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104219887 104403706 + MGP_C3HHeJ_P0084874 Fchsd2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084875.1 MGP_C3HHeJ_G0032281.1 mouse_genomes_project 7 104359032 104369951 + Fchsd2 protein_coding retained_intron MGP_C3HHeJ_T0011597.1 MGP_C3HHeJ_G0009730.1 mouse_genomes_project 7 98001706 98001999 + Gm23884 misc_RNA misc_RNA MGP_C3HHeJ_T0086430.1 MGP_C3HHeJ_G0032744.1 mouse_genomes_project 7 131649026 131665063 + MGP_C3HHeJ_P0086430 Rnf40 protein_coding protein_coding MGP_C3HHeJ_T0086431.1 MGP_C3HHeJ_G0032744.1 mouse_genomes_project 7 131649178 131663858 + MGP_C3HHeJ_P0086431 Rnf40 protein_coding protein_coding MGP_C3HHeJ_T0086432.1 MGP_C3HHeJ_G0032744.1 mouse_genomes_project 7 131649178 131663849 + MGP_C3HHeJ_P0086432 Rnf40 protein_coding protein_coding MGP_C3HHeJ_T0086433.1 MGP_C3HHeJ_G0032744.1 mouse_genomes_project 7 131652674 131654986 + Rnf40 protein_coding retained_intron MGP_C3HHeJ_T0086434.1 MGP_C3HHeJ_G0032744.1 mouse_genomes_project 7 131653135 131656492 + Rnf40 protein_coding retained_intron MGP_C3HHeJ_T0086435.1 MGP_C3HHeJ_G0032744.1 mouse_genomes_project 7 131657072 131660867 + Rnf40 protein_coding retained_intron MGP_C3HHeJ_T0086948.1 MGP_C3HHeJ_G0032853.1 mouse_genomes_project 7 144561306 144569102 - 6430531B16Rik protein_coding retained_intron MGP_C3HHeJ_T0086949.1 MGP_C3HHeJ_G0032853.1 mouse_genomes_project 7 144561306 144569134 - MGP_C3HHeJ_P0086949 6430531B16Rik protein_coding protein_coding MGP_C3HHeJ_T0086950.1 MGP_C3HHeJ_G0032853.1 mouse_genomes_project 7 144565874 144569102 - MGP_C3HHeJ_P0086950 6430531B16Rik protein_coding protein_coding MGP_C3HHeJ_T0085392.1 MGP_C3HHeJ_G0032533.1 mouse_genomes_project 7 112331323 112338676 - MGP_C3HHeJ_P0085392 Nlrp10 protein_coding protein_coding MGP_C3HHeJ_T0082452.1 MGP_C3HHeJ_G0031699.1 mouse_genomes_project 7 29407065 29415195 - MGP_C3HHeJ_P0082452 Zfp14 protein_coding protein_coding MGP_C3HHeJ_T0080896.1 MGP_C3HHeJ_G0031234.1 mouse_genomes_project 7 605004 608229 - MGP_C3HHeJ_P0080896 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018097.1 MGP_C3HHeJ_G0015413.1 mouse_genomes_project 7 515065 527587 - Gm15927 processed_transcript antisense MGP_C3HHeJ_T0018098.1 MGP_C3HHeJ_G0015413.1 mouse_genomes_project 7 525255 526202 - Gm15927 processed_transcript antisense MGP_C3HHeJ_T0018099.1 MGP_C3HHeJ_G0015413.1 mouse_genomes_project 7 525256 527555 - Gm15927 processed_transcript retained_intron MGP_C3HHeJ_T0018100.1 MGP_C3HHeJ_G0015413.1 mouse_genomes_project 7 527049 527528 - Gm15927 processed_transcript processed_transcript MGP_C3HHeJ_T0018101.1 MGP_C3HHeJ_G0015413.1 mouse_genomes_project 7 527264 527838 - Gm15927 processed_transcript processed_transcript MGP_C3HHeJ_T0085061.1 MGP_C3HHeJ_G0032331.1 mouse_genomes_project 7 106108201 106109146 - MGP_C3HHeJ_P0085061 Olfr569 protein_coding protein_coding MGP_C3HHeJ_T0015586.1 MGP_C3HHeJ_G0013690.1 mouse_genomes_project 7 42291020 42292860 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081753.1 MGP_C3HHeJ_G0031523.1 mouse_genomes_project 7 22862415 22868420 + MGP_C3HHeJ_P0081753 Zfp114 protein_coding protein_coding MGP_C3HHeJ_T0081754.1 MGP_C3HHeJ_G0031523.1 mouse_genomes_project 7 22862441 22869671 + MGP_C3HHeJ_P0081754 Zfp114 protein_coding protein_coding MGP_C3HHeJ_T0081755.1 MGP_C3HHeJ_G0031523.1 mouse_genomes_project 7 22864719 22870543 + MGP_C3HHeJ_P0081755 Zfp114 protein_coding protein_coding MGP_C3HHeJ_T0081803.1 MGP_C3HHeJ_G0031535.1 mouse_genomes_project 7 23199684 23227322 + MGP_C3HHeJ_P0081803 Cadm4 protein_coding protein_coding MGP_C3HHeJ_T0081804.1 MGP_C3HHeJ_G0031535.1 mouse_genomes_project 7 23222745 23225583 + Cadm4 protein_coding processed_transcript MGP_C3HHeJ_T0099560.1 MGP_C3HHeJ_G0037754.1 mouse_genomes_project 7 2285105 2285212 - Gm23942 snRNA snRNA MGP_C3HHeJ_T0102144.1 MGP_C3HHeJ_G0040108.1 mouse_genomes_project 7 665683 894778 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005065.1 MGP_C3HHeJ_G0004315.1 mouse_genomes_project 7 1027316 1074479 - 9430041J12Rik antisense antisense MGP_C3HHeJ_T0005066.1 MGP_C3HHeJ_G0004315.1 mouse_genomes_project 7 1027346 1074191 - 9430041J12Rik antisense antisense MGP_C3HHeJ_T0005067.1 MGP_C3HHeJ_G0004315.1 mouse_genomes_project 7 1027655 1074191 - 9430041J12Rik antisense antisense MGP_C3HHeJ_T0005068.1 MGP_C3HHeJ_G0004315.1 mouse_genomes_project 7 1073653 1074191 - 9430041J12Rik antisense pseudogene MGP_C3HHeJ_T0002284.1 MGP_C3HHeJ_G0002204.1 mouse_genomes_project 7 148141834 148143236 + TEC TEC MGP_C3HHeJ_T0087328.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147238261 147274454 + MGP_C3HHeJ_P0087328 Lsp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087329.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147240711 147274454 + MGP_C3HHeJ_P0087329 Lsp1 protein_coding protein_coding MGP_C3HHeJ_T0087330.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147251694 147274450 + MGP_C3HHeJ_P0087330 Lsp1 protein_coding protein_coding MGP_C3HHeJ_T0087331.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147251723 147268222 + Lsp1 protein_coding retained_intron MGP_C3HHeJ_T0087332.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147252002 147274451 + MGP_C3HHeJ_P0087332 Lsp1 protein_coding protein_coding MGP_C3HHeJ_T0087333.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147254845 147266355 + Lsp1 protein_coding processed_transcript MGP_C3HHeJ_T0087334.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147256864 147274718 + Lsp1 protein_coding processed_transcript MGP_C3HHeJ_T0087335.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147263109 147269834 + Lsp1 protein_coding processed_transcript MGP_C3HHeJ_T0087336.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147263254 147266331 + Lsp1 protein_coding processed_transcript MGP_C3HHeJ_T0087337.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147268867 147270273 + Lsp1 protein_coding retained_intron MGP_C3HHeJ_T0087338.1 MGP_C3HHeJ_G0032956.1 mouse_genomes_project 7 147269663 147274368 + Lsp1 protein_coding retained_intron MGP_C3HHeJ_T0002175.1 MGP_C3HHeJ_G0002096.1 mouse_genomes_project 7 37627245 37628447 - TEC TEC MGP_C3HHeJ_T0084579.1 MGP_C3HHeJ_G0032211.1 mouse_genomes_project 7 95322732 95326304 + Ccdc90b protein_coding processed_transcript MGP_C3HHeJ_T0084580.1 MGP_C3HHeJ_G0032211.1 mouse_genomes_project 7 95322732 95344559 + MGP_C3HHeJ_P0084580 Ccdc90b protein_coding protein_coding MGP_C3HHeJ_T0084581.1 MGP_C3HHeJ_G0032211.1 mouse_genomes_project 7 95322732 95344559 + MGP_C3HHeJ_P0084581 Ccdc90b protein_coding protein_coding MGP_C3HHeJ_T0008933.1 MGP_C3HHeJ_G0007187.1 mouse_genomes_project 7 130169685 130196574 - Gm44875 lincRNA lincRNA MGP_C3HHeJ_T0086290.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131023274 131026955 - MGP_C3HHeJ_P0086290 Prrt2 protein_coding protein_coding MGP_C3HHeJ_T0086291.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131023286 131026718 - Prrt2 protein_coding retained_intron MGP_C3HHeJ_T0086292.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131023391 131025646 - MGP_C3HHeJ_P0086292 Prrt2 protein_coding protein_coding MGP_C3HHeJ_T0086293.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131023901 131025339 - MGP_C3HHeJ_P0086293 Prrt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086294.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131024250 131026700 - Prrt2 protein_coding processed_transcript MGP_C3HHeJ_T0086295.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131024447 131026881 - MGP_C3HHeJ_P0086295 Prrt2 protein_coding protein_coding MGP_C3HHeJ_T0086296.1 MGP_C3HHeJ_G0032714.1 mouse_genomes_project 7 131025138 131026099 - Prrt2 protein_coding processed_transcript MGP_C3HHeJ_T0100856.1 MGP_C3HHeJ_G0039050.1 mouse_genomes_project 7 116145069 116145199 - Gm24154 snoRNA snoRNA MGP_C3HHeJ_T0084221.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82699330 82722360 + MGP_C3HHeJ_P0084221 Vps33b protein_coding protein_coding MGP_C3HHeJ_T0084222.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82699360 82722358 + MGP_C3HHeJ_P0084222 Vps33b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084223.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82699415 82716550 + Vps33b protein_coding retained_intron MGP_C3HHeJ_T0084224.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82699421 82722356 + MGP_C3HHeJ_P0084224 Vps33b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084225.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82705126 82714875 + Vps33b protein_coding processed_transcript MGP_C3HHeJ_T0084226.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82720812 82722535 + MGP_C3HHeJ_P0084226 Vps33b protein_coding protein_coding MGP_C3HHeJ_T0084227.1 MGP_C3HHeJ_G0032112.1 mouse_genomes_project 7 82720860 82721683 + Vps33b protein_coding retained_intron MGP_C3HHeJ_T0085329.1 MGP_C3HHeJ_G0032477.1 mouse_genomes_project 7 110232272 110233484 - MGP_C3HHeJ_P0085329 protein_coding protein_coding MGP_C3HHeJ_T0083818.1 MGP_C3HHeJ_G0032031.1 mouse_genomes_project 7 64180646 64185278 + MGP_C3HHeJ_P0083818 Magel2 protein_coding protein_coding MGP_C3HHeJ_T0002221.1 MGP_C3HHeJ_G0002141.1 mouse_genomes_project 7 76143144 76145344 - TEC TEC MGP_C3HHeJ_T0085109.1 MGP_C3HHeJ_G0032377.1 mouse_genomes_project 7 107112586 107114133 - MGP_C3HHeJ_P0085109 protein_coding protein_coding MGP_C3HHeJ_T0085110.1 MGP_C3HHeJ_G0032377.1 mouse_genomes_project 7 107112587 107113789 - protein_coding retained_intron MGP_C3HHeJ_T0085111.1 MGP_C3HHeJ_G0032377.1 mouse_genomes_project 7 107113503 107114151 - MGP_C3HHeJ_P0085111 protein_coding protein_coding MGP_C3HHeJ_T0098537.1 MGP_C3HHeJ_G0036738.1 mouse_genomes_project 7 35194685 35195823 - Gm44836 sense_intronic sense_intronic MGP_C3HHeJ_T0081792.1 MGP_C3HHeJ_G0031533.1 mouse_genomes_project 7 23142336 23159606 - MGP_C3HHeJ_P0081792 Irgc1 protein_coding protein_coding MGP_C3HHeJ_T0081793.1 MGP_C3HHeJ_G0031533.1 mouse_genomes_project 7 23142336 23145944 - MGP_C3HHeJ_P0081793 Irgc1 protein_coding protein_coding MGP_C3HHeJ_T0081794.1 MGP_C3HHeJ_G0031533.1 mouse_genomes_project 7 23143558 23167141 - MGP_C3HHeJ_P0081794 Irgc1 protein_coding protein_coding MGP_C3HHeJ_T0081795.1 MGP_C3HHeJ_G0031533.1 mouse_genomes_project 7 23165449 23167267 - Irgc1 protein_coding processed_transcript MGP_C3HHeJ_T0081796.1 MGP_C3HHeJ_G0031533.1 mouse_genomes_project 7 23165852 23167257 - Irgc1 protein_coding processed_transcript MGP_C3HHeJ_T0085495.1 MGP_C3HHeJ_G0032560.1 mouse_genomes_project 7 114344549 114403928 - MGP_C3HHeJ_P0085495 Mrvi1 protein_coding protein_coding MGP_C3HHeJ_T0085496.1 MGP_C3HHeJ_G0032560.1 mouse_genomes_project 7 114344555 114422040 - MGP_C3HHeJ_P0085496 Mrvi1 protein_coding protein_coding MGP_C3HHeJ_T0085497.1 MGP_C3HHeJ_G0032560.1 mouse_genomes_project 7 114347642 114421745 - MGP_C3HHeJ_P0085497 Mrvi1 protein_coding protein_coding MGP_C3HHeJ_T0085498.1 MGP_C3HHeJ_G0032560.1 mouse_genomes_project 7 114397320 114401228 - Mrvi1 protein_coding processed_transcript MGP_C3HHeJ_T0085499.1 MGP_C3HHeJ_G0032560.1 mouse_genomes_project 7 114401874 114404197 - Mrvi1 protein_coding retained_intron MGP_C3HHeJ_T0085500.1 MGP_C3HHeJ_G0032560.1 mouse_genomes_project 7 114403909 114457926 - MGP_C3HHeJ_P0085500 Mrvi1 protein_coding protein_coding MGP_C3HHeJ_T0015671.1 MGP_C3HHeJ_G0013775.1 mouse_genomes_project 7 99313166 99313638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081203.1 MGP_C3HHeJ_G0031342.1 mouse_genomes_project 7 9809094 9810015 - MGP_C3HHeJ_P0081203 Vmn1r81 protein_coding protein_coding MGP_C3HHeJ_T0087245.1 MGP_C3HHeJ_G0032933.1 mouse_genomes_project 7 146159856 146178971 + MGP_C3HHeJ_P0087245 Tspan4 protein_coding protein_coding MGP_C3HHeJ_T0087246.1 MGP_C3HHeJ_G0032933.1 mouse_genomes_project 7 146159859 146178984 + MGP_C3HHeJ_P0087246 Tspan4 protein_coding protein_coding MGP_C3HHeJ_T0087247.1 MGP_C3HHeJ_G0032933.1 mouse_genomes_project 7 146160082 146176788 + MGP_C3HHeJ_P0087247 Tspan4 protein_coding protein_coding MGP_C3HHeJ_T0087248.1 MGP_C3HHeJ_G0032933.1 mouse_genomes_project 7 146169393 146180121 + MGP_C3HHeJ_P0087248 Tspan4 protein_coding protein_coding MGP_C3HHeJ_T0087249.1 MGP_C3HHeJ_G0032933.1 mouse_genomes_project 7 146178656 146180128 + Tspan4 protein_coding retained_intron MGP_C3HHeJ_T0085366.1 MGP_C3HHeJ_G0032507.1 mouse_genomes_project 7 111455702 111456674 - MGP_C3HHeJ_P0085366 Olfr482 protein_coding protein_coding MGP_C3HHeJ_T0083575.1 MGP_C3HHeJ_G0031968.1 mouse_genomes_project 7 47438404 47510297 + MGP_C3HHeJ_P0083575 Otog protein_coding protein_coding MGP_C3HHeJ_T0008717.1 MGP_C3HHeJ_G0007033.1 mouse_genomes_project 7 936968 938696 + 1700095K22Rik lincRNA lincRNA MGP_C3HHeJ_T0081228.1 MGP_C3HHeJ_G0031354.1 mouse_genomes_project 7 10447554 10459216 + Zfp128 protein_coding retained_intron MGP_C3HHeJ_T0081229.1 MGP_C3HHeJ_G0031354.1 mouse_genomes_project 7 10447554 10460773 + MGP_C3HHeJ_P0081229 Zfp128 protein_coding protein_coding MGP_C3HHeJ_T0083355.1 MGP_C3HHeJ_G0031916.1 mouse_genomes_project 7 46305629 46309988 - MGP_C3HHeJ_P0083355 Dkkl1 protein_coding protein_coding MGP_C3HHeJ_T0085577.1 MGP_C3HHeJ_G0032576.1 mouse_genomes_project 7 117345014 117623005 + MGP_C3HHeJ_P0085577 Spon1 protein_coding protein_coding MGP_C3HHeJ_T0085578.1 MGP_C3HHeJ_G0032576.1 mouse_genomes_project 7 117345190 117512280 + MGP_C3HHeJ_P0085578 Spon1 protein_coding protein_coding MGP_C3HHeJ_T0015565.1 MGP_C3HHeJ_G0013669.1 mouse_genomes_project 7 33554466 33554925 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082023.1 MGP_C3HHeJ_G0031588.1 mouse_genomes_project 7 25131176 25157483 + MGP_C3HHeJ_P0082023 Cyp2b9 protein_coding protein_coding MGP_C3HHeJ_T0083726.1 MGP_C3HHeJ_G0032014.1 mouse_genomes_project 7 56460173 56832609 + Luzp2 protein_coding retained_intron MGP_C3HHeJ_T0083727.1 MGP_C3HHeJ_G0032014.1 mouse_genomes_project 7 56460290 56851358 + MGP_C3HHeJ_P0083727 Luzp2 protein_coding protein_coding MGP_C3HHeJ_T0084434.1 MGP_C3HHeJ_G0032153.1 mouse_genomes_project 7 86148446 86181596 + Tmc3 protein_coding retained_intron MGP_C3HHeJ_T0084435.1 MGP_C3HHeJ_G0032153.1 mouse_genomes_project 7 86148450 86155350 + Tmc3 protein_coding retained_intron MGP_C3HHeJ_T0084436.1 MGP_C3HHeJ_G0032153.1 mouse_genomes_project 7 86148450 86189101 + MGP_C3HHeJ_P0084436 Tmc3 protein_coding protein_coding MGP_C3HHeJ_T0084437.1 MGP_C3HHeJ_G0032153.1 mouse_genomes_project 7 86148611 86186436 + MGP_C3HHeJ_P0084437 Tmc3 protein_coding protein_coding MGP_C3HHeJ_T0084438.1 MGP_C3HHeJ_G0032153.1 mouse_genomes_project 7 86161010 86162384 + Tmc3 protein_coding retained_intron MGP_C3HHeJ_T0085843.1 MGP_C3HHeJ_G0032634.1 mouse_genomes_project 7 124745726 124770480 - Cdr2 protein_coding processed_transcript MGP_C3HHeJ_T0085844.1 MGP_C3HHeJ_G0032634.1 mouse_genomes_project 7 124745726 124771002 - MGP_C3HHeJ_P0085844 Cdr2 protein_coding protein_coding MGP_C3HHeJ_T0084494.1 MGP_C3HHeJ_G0032184.1 mouse_genomes_project 7 89335206 89336185 + MGP_C3HHeJ_P0084494 Olfr292 protein_coding protein_coding MGP_C3HHeJ_T0010753.1 MGP_C3HHeJ_G0008886.1 mouse_genomes_project 7 17762266 17762341 + Mir343 miRNA miRNA MGP_C3HHeJ_T0102219.1 MGP_C3HHeJ_G0040182.1 mouse_genomes_project 7 33951470 33952447 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008959.1 MGP_C3HHeJ_G0007203.1 mouse_genomes_project 7 134013264 134034993 + Gm44778 lincRNA lincRNA MGP_C3HHeJ_T0087207.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122399 146128279 - Pidd1 protein_coding retained_intron MGP_C3HHeJ_T0087208.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122399 146127643 - MGP_C3HHeJ_P0087208 Pidd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087209.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122399 146127640 - MGP_C3HHeJ_P0087209 Pidd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087210.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122399 146128312 - MGP_C3HHeJ_P0087210 Pidd1 protein_coding protein_coding MGP_C3HHeJ_T0087211.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122403 146128295 - Pidd1 protein_coding retained_intron MGP_C3HHeJ_T0087212.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122411 146127643 - Pidd1 protein_coding retained_intron MGP_C3HHeJ_T0087213.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122801 146127642 - MGP_C3HHeJ_P0087213 Pidd1 protein_coding protein_coding MGP_C3HHeJ_T0087214.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122811 146127607 - MGP_C3HHeJ_P0087214 Pidd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087215.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146122816 146127607 - Pidd1 protein_coding retained_intron MGP_C3HHeJ_T0087216.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146123785 146124411 - Pidd1 protein_coding retained_intron MGP_C3HHeJ_T0087217.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146125336 146126576 - Pidd1 protein_coding retained_intron MGP_C3HHeJ_T0087218.1 MGP_C3HHeJ_G0032927.1 mouse_genomes_project 7 146126452 146128281 - Pidd1 protein_coding processed_transcript MGP_C3HHeJ_T0102174.1 MGP_C3HHeJ_G0040138.1 mouse_genomes_project 7 12114370 12114941 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102231.1 MGP_C3HHeJ_G0040194.1 mouse_genomes_project 7 45006771 45252747 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085823.1 MGP_C3HHeJ_G0032630.1 mouse_genomes_project 7 124441652 124501120 + MGP_C3HHeJ_P0085823 BC030336 protein_coding protein_coding MGP_C3HHeJ_T0086993.1 MGP_C3HHeJ_G0032864.1 mouse_genomes_project 7 144749840 144754089 - MGP_C3HHeJ_P0086993 Sprn protein_coding protein_coding MGP_C3HHeJ_T0086994.1 MGP_C3HHeJ_G0032864.1 mouse_genomes_project 7 144750176 144752754 - Sprn protein_coding processed_transcript MGP_C3HHeJ_T0084050.1 MGP_C3HHeJ_G0032079.1 mouse_genomes_project 7 78092670 78131030 + MGP_C3HHeJ_P0084050 Klhl25 protein_coding protein_coding MGP_C3HHeJ_T0084051.1 MGP_C3HHeJ_G0032079.1 mouse_genomes_project 7 78092698 78131029 + MGP_C3HHeJ_P0084051 Klhl25 protein_coding protein_coding MGP_C3HHeJ_T0084052.1 MGP_C3HHeJ_G0032079.1 mouse_genomes_project 7 78092701 78110450 + MGP_C3HHeJ_P0084052 Klhl25 protein_coding protein_coding MGP_C3HHeJ_T0084053.1 MGP_C3HHeJ_G0032079.1 mouse_genomes_project 7 78092724 78110446 + MGP_C3HHeJ_P0084053 Klhl25 protein_coding protein_coding MGP_C3HHeJ_T0084054.1 MGP_C3HHeJ_G0032079.1 mouse_genomes_project 7 78092757 78130424 + Klhl25 protein_coding processed_transcript MGP_C3HHeJ_T0084055.1 MGP_C3HHeJ_G0032079.1 mouse_genomes_project 7 78092801 78108586 + MGP_C3HHeJ_P0084055 Klhl25 protein_coding protein_coding MGP_C3HHeJ_T0011588.1 MGP_C3HHeJ_G0009721.1 mouse_genomes_project 7 36990641 36990937 - Gm24550 misc_RNA misc_RNA MGP_C3HHeJ_T0102153.1 MGP_C3HHeJ_G0040117.1 mouse_genomes_project 7 7911042 7911362 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082189.1 MGP_C3HHeJ_G0031630.1 mouse_genomes_project 7 26968536 26991349 + MGP_C3HHeJ_P0082189 protein_coding protein_coding MGP_C3HHeJ_T0082987.1 MGP_C3HHeJ_G0031806.1 mouse_genomes_project 7 38516680 38529158 - MGP_C3HHeJ_P0082987 Plekhf1 protein_coding protein_coding MGP_C3HHeJ_T0083096.1 MGP_C3HHeJ_G0031843.1 mouse_genomes_project 7 44703005 44709623 + MGP_C3HHeJ_P0083096 Klk14 protein_coding protein_coding MGP_C3HHeJ_T0015597.1 MGP_C3HHeJ_G0013701.1 mouse_genomes_project 7 43995815 43996351 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082918.1 MGP_C3HHeJ_G0031795.1 mouse_genomes_project 7 35721792 35730912 - MGP_C3HHeJ_P0082918 Nudt19 protein_coding protein_coding MGP_C3HHeJ_T0082919.1 MGP_C3HHeJ_G0031795.1 mouse_genomes_project 7 35722128 35729802 - Nudt19 protein_coding processed_transcript MGP_C3HHeJ_T0082920.1 MGP_C3HHeJ_G0031795.1 mouse_genomes_project 7 35722583 35726651 - Nudt19 protein_coding retained_intron MGP_C3HHeJ_T0081915.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24088010 24117298 + MGP_C3HHeJ_P0081915 Cic protein_coding protein_coding MGP_C3HHeJ_T0081916.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24088693 24093218 + MGP_C3HHeJ_P0081916 Cic protein_coding protein_coding MGP_C3HHeJ_T0081917.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24090873 24117293 + MGP_C3HHeJ_P0081917 Cic protein_coding unknown_likely_coding MGP_C3HHeJ_T0081918.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24100380 24108108 + Cic protein_coding processed_transcript MGP_C3HHeJ_T0081919.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24101535 24108071 + Cic protein_coding processed_transcript MGP_C3HHeJ_T0081920.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24104073 24117287 + MGP_C3HHeJ_P0081920 Cic protein_coding protein_coding MGP_C3HHeJ_T0081921.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24104073 24117284 + MGP_C3HHeJ_P0081921 Cic protein_coding protein_coding MGP_C3HHeJ_T0081922.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24105948 24114481 + MGP_C3HHeJ_P0081922 Cic protein_coding protein_coding MGP_C3HHeJ_T0081923.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24106355 24108334 + Cic protein_coding processed_transcript MGP_C3HHeJ_T0081924.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24107808 24108823 + Cic protein_coding retained_intron MGP_C3HHeJ_T0081925.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24108961 24117281 + Cic protein_coding retained_intron MGP_C3HHeJ_T0081926.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24112401 24112845 + Cic protein_coding retained_intron MGP_C3HHeJ_T0081927.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24114309 24117284 + MGP_C3HHeJ_P0081927 Cic protein_coding protein_coding MGP_C3HHeJ_T0081928.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24114346 24115217 + Cic protein_coding retained_intron MGP_C3HHeJ_T0081929.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24115073 24115600 + Cic protein_coding retained_intron MGP_C3HHeJ_T0081930.1 MGP_C3HHeJ_G0031564.1 mouse_genomes_project 7 24116158 24117284 + MGP_C3HHeJ_P0081930 Cic protein_coding protein_coding MGP_C3HHeJ_T0008851.1 MGP_C3HHeJ_G0007140.1 mouse_genomes_project 7 81202723 81205665 - Gm44730 lincRNA lincRNA MGP_C3HHeJ_T0015677.1 MGP_C3HHeJ_G0013781.1 mouse_genomes_project 7 101386545 101386785 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086562.1 MGP_C3HHeJ_G0032769.1 mouse_genomes_project 7 132153510 132222701 + MGP_C3HHeJ_P0086562 Itgam protein_coding protein_coding MGP_C3HHeJ_T0086566.1 MGP_C3HHeJ_G0032769.1 mouse_genomes_project 7 132213590 132221755 + MGP_C3HHeJ_P0086566 Itgam protein_coding protein_coding MGP_C3HHeJ_T0081944.1 MGP_C3HHeJ_G0031569.1 mouse_genomes_project 7 24194840 24196924 - MGP_C3HHeJ_P0081944 Cnfn protein_coding protein_coding MGP_C3HHeJ_T0081945.1 MGP_C3HHeJ_G0031569.1 mouse_genomes_project 7 24194842 24196945 - MGP_C3HHeJ_P0081945 Cnfn protein_coding protein_coding MGP_C3HHeJ_T0008744.1 MGP_C3HHeJ_G0007056.1 mouse_genomes_project 7 30302297 30303662 + Gm29440 lincRNA lincRNA MGP_C3HHeJ_T0005138.1 MGP_C3HHeJ_G0004364.1 mouse_genomes_project 7 44965011 45002611 - antisense antisense MGP_C3HHeJ_T0084689.1 MGP_C3HHeJ_G0032234.1 mouse_genomes_project 7 101048598 101110182 - MGP_C3HHeJ_P0084689 Capn5 protein_coding protein_coding MGP_C3HHeJ_T0084690.1 MGP_C3HHeJ_G0032234.1 mouse_genomes_project 7 101050700 101093157 - MGP_C3HHeJ_P0084690 Capn5 protein_coding protein_coding MGP_C3HHeJ_T0084692.1 MGP_C3HHeJ_G0032234.1 mouse_genomes_project 7 101074991 101093025 - Capn5 protein_coding processed_transcript MGP_C3HHeJ_T0084693.1 MGP_C3HHeJ_G0032234.1 mouse_genomes_project 7 101092795 101095606 - MGP_C3HHeJ_P0084693 Capn5 protein_coding protein_coding MGP_C3HHeJ_T0084694.1 MGP_C3HHeJ_G0032234.1 mouse_genomes_project 7 101092812 101096085 - MGP_C3HHeJ_P0084694 Capn5 protein_coding protein_coding MGP_C3HHeJ_T0081199.1 MGP_C3HHeJ_G0031338.1 mouse_genomes_project 7 9363720 9364638 + MGP_C3HHeJ_P0081199 Vmn1r75 protein_coding protein_coding MGP_C3HHeJ_T0086723.1 MGP_C3HHeJ_G0032795.1 mouse_genomes_project 7 135446135 135521803 + MGP_C3HHeJ_P0086723 5430419D17Rik protein_coding protein_coding MGP_C3HHeJ_T0086724.1 MGP_C3HHeJ_G0032795.1 mouse_genomes_project 7 135483142 135506410 + 5430419D17Rik protein_coding retained_intron MGP_C3HHeJ_T0084481.1 MGP_C3HHeJ_G0032172.1 mouse_genomes_project 7 88916630 88917686 - MGP_C3HHeJ_P0084481 Olfr308 protein_coding protein_coding MGP_C3HHeJ_T0002277.1 MGP_C3HHeJ_G0002197.1 mouse_genomes_project 7 132080792 132084122 + TEC TEC MGP_C3HHeJ_T0085185.1 MGP_C3HHeJ_G0032422.1 mouse_genomes_project 7 107840068 107845569 - MGP_C3HHeJ_P0085185 protein_coding protein_coding MGP_C3HHeJ_T0083527.1 MGP_C3HHeJ_G0031955.1 mouse_genomes_project 7 46968219 46978330 - MGP_C3HHeJ_P0083527 Kcnj14 protein_coding protein_coding MGP_C3HHeJ_T0015531.1 MGP_C3HHeJ_G0013635.1 mouse_genomes_project 7 17158818 17159388 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082460.1 MGP_C3HHeJ_G0031702.1 mouse_genomes_project 7 29450944 29464073 - MGP_C3HHeJ_P0082460 Zfp566 protein_coding protein_coding MGP_C3HHeJ_T0082461.1 MGP_C3HHeJ_G0031702.1 mouse_genomes_project 7 29454641 29464009 - Zfp566 protein_coding retained_intron MGP_C3HHeJ_T0099596.1 MGP_C3HHeJ_G0037790.1 mouse_genomes_project 7 107554628 107554736 - Gm24846 snRNA snRNA MGP_C3HHeJ_T0015583.1 MGP_C3HHeJ_G0013687.1 mouse_genomes_project 7 41972236 41973737 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015495.1 MGP_C3HHeJ_G0013599.1 mouse_genomes_project 7 1582356 1583108 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102170.1 MGP_C3HHeJ_G0040134.1 mouse_genomes_project 7 11014399 11039200 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015530.1 MGP_C3HHeJ_G0013634.1 mouse_genomes_project 7 16407764 16409271 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015570.1 MGP_C3HHeJ_G0013674.1 mouse_genomes_project 7 33904975 33905777 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082750.1 MGP_C3HHeJ_G0031760.1 mouse_genomes_project 7 30508459 30520028 + MGP_C3HHeJ_P0082750 Lgi4 protein_coding protein_coding MGP_C3HHeJ_T0082751.1 MGP_C3HHeJ_G0031760.1 mouse_genomes_project 7 30509684 30512787 + MGP_C3HHeJ_P0082751 Lgi4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082752.1 MGP_C3HHeJ_G0031760.1 mouse_genomes_project 7 30509722 30513192 + MGP_C3HHeJ_P0082752 Lgi4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082753.1 MGP_C3HHeJ_G0031760.1 mouse_genomes_project 7 30512667 30513714 + MGP_C3HHeJ_P0082753 Lgi4 protein_coding protein_coding MGP_C3HHeJ_T0085326.1 MGP_C3HHeJ_G0032474.1 mouse_genomes_project 7 110202266 110203214 + MGP_C3HHeJ_P0085326 Olfr704 protein_coding protein_coding MGP_C3HHeJ_T0085670.1 MGP_C3HHeJ_G0032591.1 mouse_genomes_project 7 121034001 121299671 + Xylt1 protein_coding retained_intron MGP_C3HHeJ_T0085671.1 MGP_C3HHeJ_G0032591.1 mouse_genomes_project 7 121034001 121339572 + MGP_C3HHeJ_P0085671 Xylt1 protein_coding protein_coding MGP_C3HHeJ_T0085672.1 MGP_C3HHeJ_G0032591.1 mouse_genomes_project 7 121136680 121212020 + Xylt1 protein_coding retained_intron MGP_C3HHeJ_T0083211.1 MGP_C3HHeJ_G0031874.1 mouse_genomes_project 7 45579124 45585211 - MGP_C3HHeJ_P0083211 Spib protein_coding protein_coding MGP_C3HHeJ_T0083212.1 MGP_C3HHeJ_G0031874.1 mouse_genomes_project 7 45581101 45584414 - MGP_C3HHeJ_P0083212 Spib protein_coding protein_coding MGP_C3HHeJ_T0083213.1 MGP_C3HHeJ_G0031874.1 mouse_genomes_project 7 45581101 45585193 - MGP_C3HHeJ_P0083213 Spib protein_coding protein_coding MGP_C3HHeJ_T0084219.1 MGP_C3HHeJ_G0032111.1 mouse_genomes_project 7 82690843 82694999 + MGP_C3HHeJ_P0084219 Ngrn protein_coding protein_coding MGP_C3HHeJ_T0084220.1 MGP_C3HHeJ_G0032111.1 mouse_genomes_project 7 82690848 82694999 + Ngrn protein_coding retained_intron MGP_C3HHeJ_T0102235.1 MGP_C3HHeJ_G0040198.1 mouse_genomes_project 7 45038234 45042435 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0087490.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149303360 149338625 - MGP_C3HHeJ_P0087490 Cttn protein_coding protein_coding MGP_C3HHeJ_T0087491.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149303362 149338889 - MGP_C3HHeJ_P0087491 Cttn protein_coding protein_coding MGP_C3HHeJ_T0087492.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149304510 149305967 - Cttn protein_coding retained_intron MGP_C3HHeJ_T0087493.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149306424 149317441 - Cttn protein_coding retained_intron MGP_C3HHeJ_T0087494.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149307657 149313536 - Cttn protein_coding processed_transcript MGP_C3HHeJ_T0087495.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149313433 149320254 - Cttn protein_coding processed_transcript MGP_C3HHeJ_T0087496.1 MGP_C3HHeJ_G0032984.1 mouse_genomes_project 7 149324130 149328440 - Cttn protein_coding processed_transcript MGP_C3HHeJ_T0087088.1 MGP_C3HHeJ_G0032907.1 mouse_genomes_project 7 145746129 145755512 - MGP_C3HHeJ_P0087088 Sigirr protein_coding protein_coding MGP_C3HHeJ_T0080944.1 MGP_C3HHeJ_G0031245.1 mouse_genomes_project 7 1287891 1295293 + MGP_C3HHeJ_P0080944 Ncr1 protein_coding protein_coding MGP_C3HHeJ_T0080945.1 MGP_C3HHeJ_G0031245.1 mouse_genomes_project 7 1287936 1295293 + MGP_C3HHeJ_P0080945 Ncr1 protein_coding protein_coding MGP_C3HHeJ_T0085344.1 MGP_C3HHeJ_G0032491.1 mouse_genomes_project 7 110675697 110747260 + MGP_C3HHeJ_P0085344 Syt9 protein_coding protein_coding MGP_C3HHeJ_T0085345.1 MGP_C3HHeJ_G0032491.1 mouse_genomes_project 7 110675759 110856190 + MGP_C3HHeJ_P0085345 Syt9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085346.1 MGP_C3HHeJ_G0032491.1 mouse_genomes_project 7 110675759 110856193 + MGP_C3HHeJ_P0085346 Syt9 protein_coding protein_coding MGP_C3HHeJ_T0085347.1 MGP_C3HHeJ_G0032491.1 mouse_genomes_project 7 110811623 110856190 + Syt9 protein_coding retained_intron MGP_C3HHeJ_T0085348.1 MGP_C3HHeJ_G0032491.1 mouse_genomes_project 7 110811657 110856190 + Syt9 protein_coding retained_intron MGP_C3HHeJ_T0008753.1 MGP_C3HHeJ_G0007064.1 mouse_genomes_project 7 35231539 35236747 + Gm45097 lincRNA lincRNA MGP_C3HHeJ_T0008775.1 MGP_C3HHeJ_G0007081.1 mouse_genomes_project 7 40860677 40961710 - Gm28807 lincRNA lincRNA MGP_C3HHeJ_T0086963.1 MGP_C3HHeJ_G0032858.1 mouse_genomes_project 7 144664414 144677083 - MGP_C3HHeJ_P0086963 Caly protein_coding protein_coding MGP_C3HHeJ_T0086964.1 MGP_C3HHeJ_G0032858.1 mouse_genomes_project 7 144664414 144676836 - MGP_C3HHeJ_P0086964 Caly protein_coding protein_coding MGP_C3HHeJ_T0085137.1 MGP_C3HHeJ_G0032402.1 mouse_genomes_project 7 107473324 107474275 - MGP_C3HHeJ_P0085137 Olfr648 protein_coding protein_coding MGP_C3HHeJ_T0008937.1 MGP_C3HHeJ_G0007190.1 mouse_genomes_project 7 130798537 130807078 - lincRNA lincRNA MGP_C3HHeJ_T0005090.1 MGP_C3HHeJ_G0004328.1 mouse_genomes_project 7 18227086 18229160 + Gm16174 antisense antisense MGP_C3HHeJ_T0081120.1 MGP_C3HHeJ_G0031296.1 mouse_genomes_project 7 3089931 3153203 + MGP_C3HHeJ_P0081120 Nlrp4c protein_coding protein_coding MGP_C3HHeJ_T0002265.1 MGP_C3HHeJ_G0002185.1 mouse_genomes_project 7 128986334 128988797 - TEC TEC MGP_C3HHeJ_T0015620.1 MGP_C3HHeJ_G0013724.1 mouse_genomes_project 7 58420782 58421043 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084919.1 MGP_C3HHeJ_G0032286.1 mouse_genomes_project 7 104719152 104721690 - MGP_C3HHeJ_P0084919 Rpl6l protein_coding protein_coding MGP_C3HHeJ_T0002187.1 MGP_C3HHeJ_G0002108.1 mouse_genomes_project 7 45355643 45355800 + TEC TEC MGP_C3HHeJ_T0085737.1 MGP_C3HHeJ_G0032604.1 mouse_genomes_project 7 122556796 122605001 + Iqck protein_coding retained_intron MGP_C3HHeJ_T0085738.1 MGP_C3HHeJ_G0032604.1 mouse_genomes_project 7 122556811 122680971 + MGP_C3HHeJ_P0085738 Iqck protein_coding protein_coding MGP_C3HHeJ_T0085739.1 MGP_C3HHeJ_G0032604.1 mouse_genomes_project 7 122556811 122681503 + MGP_C3HHeJ_P0085739 Iqck protein_coding protein_coding MGP_C3HHeJ_T0085740.1 MGP_C3HHeJ_G0032604.1 mouse_genomes_project 7 122556811 122681139 + MGP_C3HHeJ_P0085740 Iqck protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085741.1 MGP_C3HHeJ_G0032604.1 mouse_genomes_project 7 122642652 122680617 + Iqck protein_coding processed_transcript MGP_C3HHeJ_T0015690.1 MGP_C3HHeJ_G0013794.1 mouse_genomes_project 7 107555313 107556515 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082892.1 MGP_C3HHeJ_G0031791.1 mouse_genomes_project 7 35561474 35566158 - MGP_C3HHeJ_P0082892 Faap24 protein_coding protein_coding MGP_C3HHeJ_T0082893.1 MGP_C3HHeJ_G0031791.1 mouse_genomes_project 7 35561627 35566035 - Faap24 protein_coding retained_intron MGP_C3HHeJ_T0082894.1 MGP_C3HHeJ_G0031791.1 mouse_genomes_project 7 35562018 35566030 - MGP_C3HHeJ_P0082894 Faap24 protein_coding protein_coding MGP_C3HHeJ_T0083236.1 MGP_C3HHeJ_G0031877.1 mouse_genomes_project 7 45625065 45638577 + Napsa protein_coding retained_intron MGP_C3HHeJ_T0083237.1 MGP_C3HHeJ_G0031877.1 mouse_genomes_project 7 45625065 45643279 + MGP_C3HHeJ_P0083237 Napsa protein_coding protein_coding MGP_C3HHeJ_T0002206.1 MGP_C3HHeJ_G0002127.1 mouse_genomes_project 7 66156137 66156738 + TEC TEC MGP_C3HHeJ_T0097922.1 MGP_C3HHeJ_G0036134.1 mouse_genomes_project 7 84522666 84523280 + pseudogene pseudogene MGP_C3HHeJ_T0084695.1 MGP_C3HHeJ_G0032236.1 mouse_genomes_project 7 101123468 101130555 - MGP_C3HHeJ_P0084695 B3gnt6 protein_coding protein_coding MGP_C3HHeJ_T0010804.1 MGP_C3HHeJ_G0008937.1 mouse_genomes_project 7 63847954 63848042 - Gm24923 miRNA miRNA MGP_C3HHeJ_T0084408.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84697955 84812429 + MGP_C3HHeJ_P0084408 Sh3gl3 protein_coding protein_coding MGP_C3HHeJ_T0084409.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84698602 84798123 + Sh3gl3 protein_coding retained_intron MGP_C3HHeJ_T0084410.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84698616 84835788 + MGP_C3HHeJ_P0084410 Sh3gl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084411.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84698693 84835787 + MGP_C3HHeJ_P0084411 Sh3gl3 protein_coding protein_coding MGP_C3HHeJ_T0084412.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84698710 84835788 + MGP_C3HHeJ_P0084412 Sh3gl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084413.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84698916 84812492 + MGP_C3HHeJ_P0084413 Sh3gl3 protein_coding protein_coding MGP_C3HHeJ_T0084414.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84698994 84700064 + Sh3gl3 protein_coding processed_transcript MGP_C3HHeJ_T0084415.1 MGP_C3HHeJ_G0032146.1 mouse_genomes_project 7 84798966 84835597 + MGP_C3HHeJ_P0084415 Sh3gl3 protein_coding protein_coding MGP_C3HHeJ_T0085173.1 MGP_C3HHeJ_G0032413.1 mouse_genomes_project 7 107681430 107713429 - MGP_C3HHeJ_P0085173 Trim30d protein_coding protein_coding MGP_C3HHeJ_T0085174.1 MGP_C3HHeJ_G0032413.1 mouse_genomes_project 7 107683262 107713406 - MGP_C3HHeJ_P0085174 Trim30d protein_coding protein_coding MGP_C3HHeJ_T0085175.1 MGP_C3HHeJ_G0032413.1 mouse_genomes_project 7 107683641 107695799 - MGP_C3HHeJ_P0085175 Trim30d protein_coding protein_coding MGP_C3HHeJ_T0102253.1 MGP_C3HHeJ_G0040216.1 mouse_genomes_project 7 49384774 49386025 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081194.1 MGP_C3HHeJ_G0031333.1 mouse_genomes_project 7 8809307 8811710 + MGP_C3HHeJ_P0081194 protein_coding protein_coding MGP_C3HHeJ_T0015639.1 MGP_C3HHeJ_G0013743.1 mouse_genomes_project 7 75895774 75896140 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083149.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45351160 45402019 + MGP_C3HHeJ_P0083149 Shank1 protein_coding protein_coding MGP_C3HHeJ_T0083150.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45353580 45399066 + MGP_C3HHeJ_P0083150 Shank1 protein_coding protein_coding MGP_C3HHeJ_T0083151.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45353599 45398916 + MGP_C3HHeJ_P0083151 Shank1 protein_coding protein_coding MGP_C3HHeJ_T0083152.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45377626 45385349 + Shank1 protein_coding processed_transcript MGP_C3HHeJ_T0083153.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45377692 45401541 + MGP_C3HHeJ_P0083153 Shank1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083154.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45383745 45392937 + Shank1 protein_coding retained_intron MGP_C3HHeJ_T0083155.1 MGP_C3HHeJ_G0031865.1 mouse_genomes_project 7 45392340 45393636 + Shank1 protein_coding retained_intron MGP_C3HHeJ_T0081162.1 MGP_C3HHeJ_G0031313.1 mouse_genomes_project 7 3574088 3575015 - MGP_C3HHeJ_P0081162 Olfr1348 protein_coding protein_coding MGP_C3HHeJ_T0010835.1 MGP_C3HHeJ_G0008968.1 mouse_genomes_project 7 132397539 132397606 - Mir3103 miRNA miRNA MGP_C3HHeJ_T0085209.1 MGP_C3HHeJ_G0032445.1 mouse_genomes_project 7 108643960 108647150 + MGP_C3HHeJ_P0085209 Gm5901 protein_coding protein_coding MGP_C3HHeJ_T0085709.1 MGP_C3HHeJ_G0032600.1 mouse_genomes_project 7 122379806 122398453 - MGP_C3HHeJ_P0085709 Gde1 protein_coding protein_coding MGP_C3HHeJ_T0085710.1 MGP_C3HHeJ_G0032600.1 mouse_genomes_project 7 122382859 122398055 - MGP_C3HHeJ_P0085710 Gde1 protein_coding protein_coding MGP_C3HHeJ_T0084471.1 MGP_C3HHeJ_G0032164.1 mouse_genomes_project 7 87210800 87274897 - MGP_C3HHeJ_P0084471 Zfand6 protein_coding protein_coding MGP_C3HHeJ_T0084472.1 MGP_C3HHeJ_G0032164.1 mouse_genomes_project 7 87210800 87274907 - MGP_C3HHeJ_P0084472 Zfand6 protein_coding protein_coding MGP_C3HHeJ_T0087063.1 MGP_C3HHeJ_G0032898.1 mouse_genomes_project 7 145572989 145579255 + MGP_C3HHeJ_P0087063 Athl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087064.1 MGP_C3HHeJ_G0032898.1 mouse_genomes_project 7 145573164 145579257 + Athl1 protein_coding retained_intron MGP_C3HHeJ_T0087065.1 MGP_C3HHeJ_G0032898.1 mouse_genomes_project 7 145573169 145574711 + Athl1 protein_coding processed_transcript MGP_C3HHeJ_T0087066.1 MGP_C3HHeJ_G0032898.1 mouse_genomes_project 7 145573179 145579263 + MGP_C3HHeJ_P0087066 Athl1 protein_coding protein_coding MGP_C3HHeJ_T0087067.1 MGP_C3HHeJ_G0032898.1 mouse_genomes_project 7 145573908 145578443 + MGP_C3HHeJ_P0087067 Athl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087068.1 MGP_C3HHeJ_G0032898.1 mouse_genomes_project 7 145574134 145579259 + MGP_C3HHeJ_P0087068 Athl1 protein_coding protein_coding MGP_C3HHeJ_T0083819.1 MGP_C3HHeJ_G0032032.1 mouse_genomes_project 7 64226391 64228938 - MGP_C3HHeJ_P0083819 Mkrn3 protein_coding protein_coding MGP_C3HHeJ_T0005170.1 MGP_C3HHeJ_G0004388.1 mouse_genomes_project 7 83206369 83212995 + Gm44649 antisense antisense MGP_C3HHeJ_T0005171.1 MGP_C3HHeJ_G0004388.1 mouse_genomes_project 7 83206392 83207721 + Gm44649 antisense antisense MGP_C3HHeJ_T0080898.1 MGP_C3HHeJ_G0031236.1 mouse_genomes_project 7 644316 652066 - MGP_C3HHeJ_P0080898 protein_coding protein_coding MGP_C3HHeJ_T0085089.1 MGP_C3HHeJ_G0032357.1 mouse_genomes_project 7 106719474 106720389 - MGP_C3HHeJ_P0085089 protein_coding protein_coding MGP_C3HHeJ_T0081186.1 MGP_C3HHeJ_G0031329.1 mouse_genomes_project 7 7835458 7837190 - MGP_C3HHeJ_P0081186 Vmn1r69 protein_coding protein_coding MGP_C3HHeJ_T0081187.1 MGP_C3HHeJ_G0031329.1 mouse_genomes_project 7 7836391 7870404 - MGP_C3HHeJ_P0081187 Vmn1r69 protein_coding protein_coding MGP_C3HHeJ_T0081188.1 MGP_C3HHeJ_G0031329.1 mouse_genomes_project 7 7836391 7870404 - MGP_C3HHeJ_P0081188 Vmn1r69 protein_coding protein_coding MGP_C3HHeJ_T0084591.1 MGP_C3HHeJ_G0032214.1 mouse_genomes_project 7 95505713 95606531 + MGP_C3HHeJ_P0084591 Rab30 protein_coding protein_coding MGP_C3HHeJ_T0084592.1 MGP_C3HHeJ_G0032214.1 mouse_genomes_project 7 95587491 95606061 + MGP_C3HHeJ_P0084592 Rab30 protein_coding protein_coding MGP_C3HHeJ_T0084593.1 MGP_C3HHeJ_G0032214.1 mouse_genomes_project 7 95587506 95606058 + MGP_C3HHeJ_P0084593 Rab30 protein_coding protein_coding MGP_C3HHeJ_T0086868.1 MGP_C3HHeJ_G0032834.1 mouse_genomes_project 7 141398825 141634148 + MGP_C3HHeJ_P0086868 Mgmt protein_coding protein_coding MGP_C3HHeJ_T0080992.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1476399 1477859 - Tnni3 protein_coding retained_intron MGP_C3HHeJ_T0080993.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1476399 1481688 - MGP_C3HHeJ_P0080993 Tnni3 protein_coding protein_coding MGP_C3HHeJ_T0080994.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1476402 1479729 - Tnni3 protein_coding retained_intron MGP_C3HHeJ_T0080995.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1479599 1481954 - MGP_C3HHeJ_P0080995 Tnni3 protein_coding protein_coding MGP_C3HHeJ_T0080996.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1479638 1483389 - MGP_C3HHeJ_P0080996 Tnni3 protein_coding protein_coding MGP_C3HHeJ_T0080997.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1480203 1481602 - Tnni3 protein_coding retained_intron MGP_C3HHeJ_T0080998.1 MGP_C3HHeJ_G0031251.1 mouse_genomes_project 7 1480500 1481652 - Tnni3 protein_coding retained_intron MGP_C3HHeJ_T0083702.1 MGP_C3HHeJ_G0032005.1 mouse_genomes_project 7 51393027 51450488 + MGP_C3HHeJ_P0083702 Slc6a5 protein_coding protein_coding MGP_C3HHeJ_T0083703.1 MGP_C3HHeJ_G0032005.1 mouse_genomes_project 7 51394581 51446098 + MGP_C3HHeJ_P0083703 Slc6a5 protein_coding protein_coding MGP_C3HHeJ_T0085604.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118334853 118381985 + MGP_C3HHeJ_P0085604 Insc protein_coding protein_coding MGP_C3HHeJ_T0085605.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118336899 118382263 + MGP_C3HHeJ_P0085605 Insc protein_coding protein_coding MGP_C3HHeJ_T0085606.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118336925 118443739 + MGP_C3HHeJ_P0085606 Insc protein_coding protein_coding MGP_C3HHeJ_T0085607.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118344882 118360296 + Insc protein_coding retained_intron MGP_C3HHeJ_T0085608.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118359686 118443742 + MGP_C3HHeJ_P0085608 Insc protein_coding protein_coding MGP_C3HHeJ_T0085609.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118359724 118382022 + MGP_C3HHeJ_P0085609 Insc protein_coding protein_coding MGP_C3HHeJ_T0085610.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118362258 118382158 + Insc protein_coding processed_transcript MGP_C3HHeJ_T0085611.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118383021 118443739 + Insc protein_coding retained_intron MGP_C3HHeJ_T0085612.1 MGP_C3HHeJ_G0032584.1 mouse_genomes_project 7 118384915 118419975 + MGP_C3HHeJ_P0085612 Insc protein_coding protein_coding MGP_C3HHeJ_T0081189.1 MGP_C3HHeJ_G0031330.1 mouse_genomes_project 7 7897796 7898693 + MGP_C3HHeJ_P0081189 Vmn1r70 protein_coding protein_coding MGP_C3HHeJ_T0084865.1 MGP_C3HHeJ_G0032279.1 mouse_genomes_project 7 104029591 104056851 - MGP_C3HHeJ_P0084865 P2ry6 protein_coding protein_coding MGP_C3HHeJ_T0081937.1 MGP_C3HHeJ_G0031566.1 mouse_genomes_project 7 24124548 24127270 + MGP_C3HHeJ_P0081937 Prr19 protein_coding protein_coding MGP_C3HHeJ_T0087008.1 MGP_C3HHeJ_G0032876.1 mouse_genomes_project 7 145076322 145077374 + MGP_C3HHeJ_P0087008 Olfr533 protein_coding protein_coding MGP_C3HHeJ_T0087090.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145778532 145814754 + MGP_C3HHeJ_P0087090 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087091.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145786286 145813289 + MGP_C3HHeJ_P0087091 protein_coding protein_coding MGP_C3HHeJ_T0087092.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145786308 145813121 + MGP_C3HHeJ_P0087092 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087093.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145787316 145818298 + MGP_C3HHeJ_P0087093 protein_coding protein_coding MGP_C3HHeJ_T0087094.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145787331 145814621 + protein_coding retained_intron MGP_C3HHeJ_T0087095.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145787374 145803141 + protein_coding processed_transcript MGP_C3HHeJ_T0087096.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145787386 145802641 + MGP_C3HHeJ_P0087096 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087097.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145788468 145806610 + MGP_C3HHeJ_P0087097 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087098.1 MGP_C3HHeJ_G0032909.1 mouse_genomes_project 7 145788583 145803170 + protein_coding processed_transcript MGP_C3HHeJ_T0008838.1 MGP_C3HHeJ_G0007130.1 mouse_genomes_project 7 75863693 75864250 - lincRNA lincRNA MGP_C3HHeJ_T0084833.1 MGP_C3HHeJ_G0032272.1 mouse_genomes_project 7 103598986 103602087 + MGP_C3HHeJ_P0084833 Coa4 protein_coding protein_coding MGP_C3HHeJ_T0084834.1 MGP_C3HHeJ_G0032272.1 mouse_genomes_project 7 103599118 103601184 + MGP_C3HHeJ_P0084834 Coa4 protein_coding protein_coding MGP_C3HHeJ_T0010748.1 MGP_C3HHeJ_G0008881.1 mouse_genomes_project 7 4425365 4425421 + Mir5620 miRNA miRNA MGP_C3HHeJ_T0081275.1 MGP_C3HHeJ_G0031365.1 mouse_genomes_project 7 10625443 10637717 - MGP_C3HHeJ_P0081275 Mzf1 protein_coding protein_coding MGP_C3HHeJ_T0081276.1 MGP_C3HHeJ_G0031365.1 mouse_genomes_project 7 10625447 10636852 - MGP_C3HHeJ_P0081276 Mzf1 protein_coding protein_coding MGP_C3HHeJ_T0081277.1 MGP_C3HHeJ_G0031365.1 mouse_genomes_project 7 10625449 10637509 - Mzf1 protein_coding retained_intron MGP_C3HHeJ_T0081278.1 MGP_C3HHeJ_G0031365.1 mouse_genomes_project 7 10630638 10637891 - Mzf1 protein_coding retained_intron MGP_C3HHeJ_T0008754.1 MGP_C3HHeJ_G0007065.1 mouse_genomes_project 7 35284955 35291359 - Gm45229 lincRNA lincRNA MGP_C3HHeJ_T0010769.1 MGP_C3HHeJ_G0008902.1 mouse_genomes_project 7 29945688 29945765 + Gm38670 miRNA miRNA MGP_C3HHeJ_T0102292.1 MGP_C3HHeJ_G0040255.1 mouse_genomes_project 7 89147549 89148244 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085163.1 MGP_C3HHeJ_G0032410.1 mouse_genomes_project 7 107571749 107586641 - protein_coding retained_intron MGP_C3HHeJ_T0085164.1 MGP_C3HHeJ_G0032410.1 mouse_genomes_project 7 107571765 107574843 - MGP_C3HHeJ_P0085164 protein_coding protein_coding MGP_C3HHeJ_T0085165.1 MGP_C3HHeJ_G0032410.1 mouse_genomes_project 7 107573040 107582935 - MGP_C3HHeJ_P0085165 protein_coding protein_coding MGP_C3HHeJ_T0085166.1 MGP_C3HHeJ_G0032410.1 mouse_genomes_project 7 107573746 107574840 - protein_coding retained_intron MGP_C3HHeJ_T0085167.1 MGP_C3HHeJ_G0032410.1 mouse_genomes_project 7 107577590 107586539 - MGP_C3HHeJ_P0085167 protein_coding protein_coding MGP_C3HHeJ_T0085122.1 MGP_C3HHeJ_G0032388.1 mouse_genomes_project 7 107293561 107424245 - MGP_C3HHeJ_P0085122 protein_coding protein_coding MGP_C3HHeJ_T0102259.1 MGP_C3HHeJ_G0040222.1 mouse_genomes_project 7 49697947 49698932 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085534.1 MGP_C3HHeJ_G0032567.1 mouse_genomes_project 7 115884547 115933418 + MGP_C3HHeJ_P0085534 Micalcl protein_coding protein_coding MGP_C3HHeJ_T0085535.1 MGP_C3HHeJ_G0032567.1 mouse_genomes_project 7 115894761 115915771 + MGP_C3HHeJ_P0085535 Micalcl protein_coding protein_coding MGP_C3HHeJ_T0085536.1 MGP_C3HHeJ_G0032567.1 mouse_genomes_project 7 115895284 115933533 + MGP_C3HHeJ_P0085536 Micalcl protein_coding protein_coding MGP_C3HHeJ_T0085537.1 MGP_C3HHeJ_G0032567.1 mouse_genomes_project 7 115901567 115933533 + MGP_C3HHeJ_P0085537 Micalcl protein_coding protein_coding MGP_C3HHeJ_T0085538.1 MGP_C3HHeJ_G0032567.1 mouse_genomes_project 7 115927545 115933484 + Micalcl protein_coding retained_intron MGP_C3HHeJ_T0008887.1 MGP_C3HHeJ_G0007158.1 mouse_genomes_project 7 97162237 97164826 - Gm44601 lincRNA lincRNA MGP_C3HHeJ_T0002192.1 MGP_C3HHeJ_G0002113.1 mouse_genomes_project 7 56502390 56503928 + TEC TEC MGP_C3HHeJ_T0102239.1 MGP_C3HHeJ_G0040202.1 mouse_genomes_project 7 45107354 45253800 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011591.1 MGP_C3HHeJ_G0009724.1 mouse_genomes_project 7 75855423 75855676 + Gm23020 misc_RNA misc_RNA MGP_C3HHeJ_T0080886.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 593823 596774 + MGP_C3HHeJ_P0080886 Rps9 protein_coding protein_coding MGP_C3HHeJ_T0080887.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 593868 596772 + MGP_C3HHeJ_P0080887 Rps9 protein_coding protein_coding MGP_C3HHeJ_T0080888.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 593871 594708 + Rps9 protein_coding retained_intron MGP_C3HHeJ_T0080889.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 593872 594552 + MGP_C3HHeJ_P0080889 Rps9 protein_coding protein_coding MGP_C3HHeJ_T0080890.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 593878 595311 + Rps9 protein_coding retained_intron MGP_C3HHeJ_T0080891.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 593882 596737 + MGP_C3HHeJ_P0080891 Rps9 protein_coding protein_coding MGP_C3HHeJ_T0080892.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 594150 596753 + MGP_C3HHeJ_P0080892 Rps9 protein_coding protein_coding MGP_C3HHeJ_T0080893.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 594155 596262 + MGP_C3HHeJ_P0080893 Rps9 protein_coding protein_coding MGP_C3HHeJ_T0080894.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 594194 596771 + MGP_C3HHeJ_P0080894 Rps9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080895.1 MGP_C3HHeJ_G0031233.1 mouse_genomes_project 7 595497 596109 + Rps9 protein_coding retained_intron MGP_C3HHeJ_T0081391.1 MGP_C3HHeJ_G0031406.1 mouse_genomes_project 7 14221603 14224362 - MGP_C3HHeJ_P0081391 Inafm1 protein_coding protein_coding MGP_C3HHeJ_T0008757.1 MGP_C3HHeJ_G0007068.1 mouse_genomes_project 7 36308032 36311173 + Gm45143 lincRNA lincRNA MGP_C3HHeJ_T0015680.1 MGP_C3HHeJ_G0013784.1 mouse_genomes_project 7 101800223 101800585 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085545.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116216408 116457868 + MGP_C3HHeJ_P0085545 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085546.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116216445 116451131 + MGP_C3HHeJ_P0085546 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085547.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116216598 116393348 + Tead1 protein_coding retained_intron MGP_C3HHeJ_T0085548.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116289648 116449801 + MGP_C3HHeJ_P0085548 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085549.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116303946 116449801 + MGP_C3HHeJ_P0085549 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085550.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116306929 116356721 + Tead1 protein_coding processed_transcript MGP_C3HHeJ_T0085551.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116306980 116449801 + MGP_C3HHeJ_P0085551 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085552.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116307025 116449801 + MGP_C3HHeJ_P0085552 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085553.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116307025 116449801 + MGP_C3HHeJ_P0085553 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085554.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116307025 116449801 + MGP_C3HHeJ_P0085554 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085555.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116307078 116412653 + MGP_C3HHeJ_P0085555 Tead1 protein_coding protein_coding MGP_C3HHeJ_T0085556.1 MGP_C3HHeJ_G0032569.1 mouse_genomes_project 7 116307088 116393321 + Tead1 protein_coding retained_intron MGP_C3HHeJ_T0002196.1 MGP_C3HHeJ_G0002117.1 mouse_genomes_project 7 56859567 56861791 + TEC TEC MGP_C3HHeJ_T0087019.1 MGP_C3HHeJ_G0032887.1 mouse_genomes_project 7 145401287 145411913 - MGP_C3HHeJ_P0087019 Syce1 protein_coding protein_coding MGP_C3HHeJ_T0087461.1 MGP_C3HHeJ_G0032978.1 mouse_genomes_project 7 148597489 148600772 - MGP_C3HHeJ_P0087461 Mrgprg protein_coding protein_coding MGP_C3HHeJ_T0083352.1 MGP_C3HHeJ_G0031914.1 mouse_genomes_project 7 46279476 46280320 + MGP_C3HHeJ_P0083352 Pth2 protein_coding protein_coding MGP_C3HHeJ_T0010752.1 MGP_C3HHeJ_G0008885.1 mouse_genomes_project 7 17546660 17546758 + Mir330 miRNA miRNA MGP_C3HHeJ_T0015684.1 MGP_C3HHeJ_G0013788.1 mouse_genomes_project 7 103691761 103692198 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081512.1 MGP_C3HHeJ_G0031447.1 mouse_genomes_project 7 17132691 17141694 - MGP_C3HHeJ_P0081512 Psg17 protein_coding protein_coding MGP_C3HHeJ_T0015630.1 MGP_C3HHeJ_G0013734.1 mouse_genomes_project 7 68042234 68042980 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002279.1 MGP_C3HHeJ_G0002199.1 mouse_genomes_project 7 132857479 132858475 - TEC TEC MGP_C3HHeJ_T0085476.1 MGP_C3HHeJ_G0032556.1 mouse_genomes_project 7 114100449 114102609 + MGP_C3HHeJ_P0085476 Adm protein_coding protein_coding MGP_C3HHeJ_T0085477.1 MGP_C3HHeJ_G0032556.1 mouse_genomes_project 7 114100457 114102608 + MGP_C3HHeJ_P0085477 Adm protein_coding protein_coding MGP_C3HHeJ_T0085478.1 MGP_C3HHeJ_G0032556.1 mouse_genomes_project 7 114100816 114101340 + Adm protein_coding retained_intron MGP_C3HHeJ_T0015635.1 MGP_C3HHeJ_G0013739.1 mouse_genomes_project 7 74877771 74878759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082808.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34233628 34263344 - MGP_C3HHeJ_P0082808 Uba2 protein_coding protein_coding MGP_C3HHeJ_T0082809.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34233654 34235027 - Uba2 protein_coding retained_intron MGP_C3HHeJ_T0082810.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34234023 34237489 - MGP_C3HHeJ_P0082810 Uba2 protein_coding protein_coding MGP_C3HHeJ_T0082811.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34234330 34236210 - Uba2 protein_coding retained_intron MGP_C3HHeJ_T0082812.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34235369 34239188 - Uba2 protein_coding retained_intron MGP_C3HHeJ_T0082813.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34243896 34255995 - MGP_C3HHeJ_P0082813 Uba2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082814.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34246899 34250937 - Uba2 protein_coding retained_intron MGP_C3HHeJ_T0082815.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34247492 34259187 - MGP_C3HHeJ_P0082815 Uba2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082816.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34255941 34264368 - MGP_C3HHeJ_P0082816 Uba2 protein_coding protein_coding MGP_C3HHeJ_T0082817.1 MGP_C3HHeJ_G0031776.1 mouse_genomes_project 7 34257275 34259110 - Uba2 protein_coding retained_intron MGP_C3HHeJ_T0084444.1 MGP_C3HHeJ_G0032155.1 mouse_genomes_project 7 86207186 86219835 - Il16 protein_coding retained_intron MGP_C3HHeJ_T0084445.1 MGP_C3HHeJ_G0032155.1 mouse_genomes_project 7 86207402 86301220 - MGP_C3HHeJ_P0084445 Il16 protein_coding protein_coding MGP_C3HHeJ_T0084446.1 MGP_C3HHeJ_G0032155.1 mouse_genomes_project 7 86213909 86219665 - Il16 protein_coding retained_intron MGP_C3HHeJ_T0084447.1 MGP_C3HHeJ_G0032155.1 mouse_genomes_project 7 86225226 86311433 - MGP_C3HHeJ_P0084447 Il16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084448.1 MGP_C3HHeJ_G0032155.1 mouse_genomes_project 7 86288196 86298092 - MGP_C3HHeJ_P0084448 Il16 protein_coding protein_coding MGP_C3HHeJ_T0084449.1 MGP_C3HHeJ_G0032155.1 mouse_genomes_project 7 86288196 86305621 - MGP_C3HHeJ_P0084449 Il16 protein_coding protein_coding MGP_C3HHeJ_T0087182.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114030 146122179 - MGP_C3HHeJ_P0087182 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087183.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114035 146122114 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087184.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114035 146121918 - MGP_C3HHeJ_P0087184 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087185.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114035 146118881 - MGP_C3HHeJ_P0087185 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087186.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114035 146121924 - MGP_C3HHeJ_P0087186 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087187.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114038 146119628 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087188.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114038 146121925 - MGP_C3HHeJ_P0087188 Slc25a22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087189.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146114042 146117040 - MGP_C3HHeJ_P0087189 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087190.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115240 146116325 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087191.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115306 146116346 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087192.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115472 146115885 - MGP_C3HHeJ_P0087192 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087193.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115654 146117135 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087194.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115862 146119684 - MGP_C3HHeJ_P0087194 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087195.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115912 146118710 - MGP_C3HHeJ_P0087195 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087196.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115925 146118602 - MGP_C3HHeJ_P0087196 Slc25a22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087197.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146115929 146118294 - MGP_C3HHeJ_P0087197 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087198.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146116179 146118257 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087199.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146116193 146121880 - MGP_C3HHeJ_P0087199 Slc25a22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087200.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146116331 146119610 - Slc25a22 protein_coding processed_transcript MGP_C3HHeJ_T0087201.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146116397 146121879 - MGP_C3HHeJ_P0087201 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087202.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146116871 146119611 - Slc25a22 protein_coding retained_intron MGP_C3HHeJ_T0087203.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146116987 146118887 - MGP_C3HHeJ_P0087203 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087204.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146117883 146118891 - MGP_C3HHeJ_P0087204 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087205.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146118216 146118830 - MGP_C3HHeJ_P0087205 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0087206.1 MGP_C3HHeJ_G0032926.1 mouse_genomes_project 7 146118248 146118881 - MGP_C3HHeJ_P0087206 Slc25a22 protein_coding protein_coding MGP_C3HHeJ_T0015529.1 MGP_C3HHeJ_G0013633.1 mouse_genomes_project 7 16208750 16209449 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081102.1 MGP_C3HHeJ_G0031286.1 mouse_genomes_project 7 2078929 2098282 + MGP_C3HHeJ_P0081102 U2af2 protein_coding protein_coding MGP_C3HHeJ_T0081103.1 MGP_C3HHeJ_G0031286.1 mouse_genomes_project 7 2083864 2097837 + MGP_C3HHeJ_P0081103 U2af2 protein_coding protein_coding MGP_C3HHeJ_T0008780.1 MGP_C3HHeJ_G0007085.1 mouse_genomes_project 7 44509166 44514319 - Gm2511 lincRNA lincRNA MGP_C3HHeJ_T0008781.1 MGP_C3HHeJ_G0007085.1 mouse_genomes_project 7 44509169 44516971 - Gm2511 lincRNA lincRNA MGP_C3HHeJ_T0008782.1 MGP_C3HHeJ_G0007085.1 mouse_genomes_project 7 44513568 44516548 - Gm2511 lincRNA lincRNA MGP_C3HHeJ_T0082988.1 MGP_C3HHeJ_G0031807.1 mouse_genomes_project 7 38564836 38574270 - MGP_C3HHeJ_P0082988 Pop4 protein_coding protein_coding MGP_C3HHeJ_T0082989.1 MGP_C3HHeJ_G0031807.1 mouse_genomes_project 7 38567186 38574174 - MGP_C3HHeJ_P0082989 Pop4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082990.1 MGP_C3HHeJ_G0031807.1 mouse_genomes_project 7 38567256 38574216 - MGP_C3HHeJ_P0082990 Pop4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082991.1 MGP_C3HHeJ_G0031807.1 mouse_genomes_project 7 38568737 38574196 - Pop4 protein_coding retained_intron MGP_C3HHeJ_T0082992.1 MGP_C3HHeJ_G0031807.1 mouse_genomes_project 7 38568942 38574220 - MGP_C3HHeJ_P0082992 Pop4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082993.1 MGP_C3HHeJ_G0031807.1 mouse_genomes_project 7 38571222 38574122 - Pop4 protein_coding retained_intron MGP_C3HHeJ_T0005174.1 MGP_C3HHeJ_G0004391.1 mouse_genomes_project 7 86223904 86225293 + 2310044K18Rik antisense antisense MGP_C3HHeJ_T0084325.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83361176 83371721 - MGP_C3HHeJ_P0084325 Wdr73 protein_coding protein_coding MGP_C3HHeJ_T0084326.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83361177 83371684 - Wdr73 protein_coding retained_intron MGP_C3HHeJ_T0084327.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83361177 83371684 - Wdr73 protein_coding retained_intron MGP_C3HHeJ_T0084328.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83361712 83371686 - Wdr73 protein_coding retained_intron MGP_C3HHeJ_T0084329.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83363447 83371671 - Wdr73 protein_coding processed_transcript MGP_C3HHeJ_T0084330.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83363511 83371672 - MGP_C3HHeJ_P0084330 Wdr73 protein_coding protein_coding MGP_C3HHeJ_T0084331.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83363512 83371171 - Wdr73 protein_coding processed_transcript MGP_C3HHeJ_T0084332.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83364151 83370956 - Wdr73 protein_coding processed_transcript MGP_C3HHeJ_T0084333.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83368387 83371696 - Wdr73 protein_coding processed_transcript MGP_C3HHeJ_T0084334.1 MGP_C3HHeJ_G0032124.1 mouse_genomes_project 7 83371124 83371684 - Wdr73 protein_coding processed_transcript MGP_C3HHeJ_T0085328.1 MGP_C3HHeJ_G0032476.1 mouse_genomes_project 7 110227035 110227986 - MGP_C3HHeJ_P0085328 protein_coding protein_coding MGP_C3HHeJ_T0015664.1 MGP_C3HHeJ_G0013768.1 mouse_genomes_project 7 92790805 92791305 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084493.1 MGP_C3HHeJ_G0032183.1 mouse_genomes_project 7 89296195 89297206 + MGP_C3HHeJ_P0084493 Olfr293 protein_coding protein_coding MGP_C3HHeJ_T0085594.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118224144 118229002 - MGP_C3HHeJ_P0085594 Calca protein_coding protein_coding MGP_C3HHeJ_T0085595.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118224234 118225312 - Calca protein_coding retained_intron MGP_C3HHeJ_T0085596.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118225218 118228952 - MGP_C3HHeJ_P0085596 Calca protein_coding protein_coding MGP_C3HHeJ_T0085597.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118225937 118228957 - MGP_C3HHeJ_P0085597 Calca protein_coding protein_coding MGP_C3HHeJ_T0085598.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118226054 118228940 - MGP_C3HHeJ_P0085598 Calca protein_coding protein_coding MGP_C3HHeJ_T0085599.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118226985 118228951 - MGP_C3HHeJ_P0085599 Calca protein_coding protein_coding MGP_C3HHeJ_T0085600.1 MGP_C3HHeJ_G0032582.1 mouse_genomes_project 7 118227016 118228916 - MGP_C3HHeJ_P0085600 Calca protein_coding protein_coding MGP_C3HHeJ_T0002208.1 MGP_C3HHeJ_G0002129.1 mouse_genomes_project 7 66397955 66398560 + TEC TEC MGP_C3HHeJ_T0082453.1 MGP_C3HHeJ_G0031700.1 mouse_genomes_project 7 29425746 29429274 - Zfp82 protein_coding retained_intron MGP_C3HHeJ_T0082455.1 MGP_C3HHeJ_G0031700.1 mouse_genomes_project 7 29427293 29432817 - Zfp82 protein_coding retained_intron MGP_C3HHeJ_T0082456.1 MGP_C3HHeJ_G0031700.1 mouse_genomes_project 7 29427295 29443658 - MGP_C3HHeJ_P0082456 Zfp82 protein_coding protein_coding MGP_C3HHeJ_T0082457.1 MGP_C3HHeJ_G0031700.1 mouse_genomes_project 7 29427410 29444441 - MGP_C3HHeJ_P0082457 Zfp82 protein_coding protein_coding MGP_C3HHeJ_T0082458.1 MGP_C3HHeJ_G0031700.1 mouse_genomes_project 7 29428780 29444326 - MGP_C3HHeJ_P0082458 Zfp82 protein_coding protein_coding MGP_C3HHeJ_T0082459.1 MGP_C3HHeJ_G0031700.1 mouse_genomes_project 7 29430750 29444344 - MGP_C3HHeJ_P0082459 Zfp82 protein_coding protein_coding MGP_C3HHeJ_T0083043.1 MGP_C3HHeJ_G0031825.1 mouse_genomes_project 7 44401371 44413449 + MGP_C3HHeJ_P0083043 Siglecg protein_coding protein_coding MGP_C3HHeJ_T0083044.1 MGP_C3HHeJ_G0031825.1 mouse_genomes_project 7 44401406 44413449 + Siglecg protein_coding retained_intron MGP_C3HHeJ_T0083045.1 MGP_C3HHeJ_G0031825.1 mouse_genomes_project 7 44401435 44413449 + Siglecg protein_coding retained_intron MGP_C3HHeJ_T0083046.1 MGP_C3HHeJ_G0031825.1 mouse_genomes_project 7 44401640 44406985 + Siglecg protein_coding retained_intron MGP_C3HHeJ_T0008806.1 MGP_C3HHeJ_G0007105.1 mouse_genomes_project 7 69156080 69174417 - 1700112J16Rik lincRNA lincRNA MGP_C3HHeJ_T0085189.1 MGP_C3HHeJ_G0032426.1 mouse_genomes_project 7 108110961 108135713 - MGP_C3HHeJ_P0085189 protein_coding protein_coding MGP_C3HHeJ_T0086475.1 MGP_C3HHeJ_G0032752.1 mouse_genomes_project 7 131853535 131872546 + MGP_C3HHeJ_P0086475 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086476.1 MGP_C3HHeJ_G0032752.1 mouse_genomes_project 7 131868130 131870766 + MGP_C3HHeJ_P0086476 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002273.1 MGP_C3HHeJ_G0002193.1 mouse_genomes_project 7 131718039 131719230 - TEC TEC MGP_C3HHeJ_T0008843.1 MGP_C3HHeJ_G0007134.1 mouse_genomes_project 7 76998906 77004164 + Gm30459 lincRNA lincRNA MGP_C3HHeJ_T0086929.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144164935 144258853 - MGP_C3HHeJ_P0086929 protein_coding protein_coding MGP_C3HHeJ_T0086930.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144164935 144171722 - MGP_C3HHeJ_P0086930 protein_coding protein_coding MGP_C3HHeJ_T0086931.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144164935 144181229 - MGP_C3HHeJ_P0086931 protein_coding protein_coding MGP_C3HHeJ_T0086932.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144165064 144181209 - protein_coding retained_intron MGP_C3HHeJ_T0086933.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144176875 144181229 - protein_coding retained_intron MGP_C3HHeJ_T0086934.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144210039 144258853 - MGP_C3HHeJ_P0086934 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086935.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144210039 144234295 - MGP_C3HHeJ_P0086935 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086936.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144216988 144258853 - protein_coding retained_intron MGP_C3HHeJ_T0086937.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144249982 144258853 - MGP_C3HHeJ_P0086937 protein_coding protein_coding MGP_C3HHeJ_T0086938.1 MGP_C3HHeJ_G0032849.1 mouse_genomes_project 7 144253304 144258853 - protein_coding retained_intron MGP_C3HHeJ_T0087016.1 MGP_C3HHeJ_G0032884.1 mouse_genomes_project 7 145308168 145309203 + MGP_C3HHeJ_P0087016 Olfr45 protein_coding protein_coding MGP_C3HHeJ_T0087225.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146139606 146145156 + MGP_C3HHeJ_P0087225 Pnpla2 protein_coding protein_coding MGP_C3HHeJ_T0087226.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146139614 146144505 + MGP_C3HHeJ_P0087226 Pnpla2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087227.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146139615 146144507 + MGP_C3HHeJ_P0087227 Pnpla2 protein_coding protein_coding MGP_C3HHeJ_T0087228.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146139627 146143351 + MGP_C3HHeJ_P0087228 Pnpla2 protein_coding protein_coding MGP_C3HHeJ_T0087229.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146139637 146144516 + MGP_C3HHeJ_P0087229 Pnpla2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087230.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146140015 146142560 + MGP_C3HHeJ_P0087230 Pnpla2 protein_coding protein_coding MGP_C3HHeJ_T0087231.1 MGP_C3HHeJ_G0032929.1 mouse_genomes_project 7 146141426 146143099 + MGP_C3HHeJ_P0087231 Pnpla2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084594.1 MGP_C3HHeJ_G0032215.1 mouse_genomes_project 7 95627029 95644841 - MGP_C3HHeJ_P0084594 Ddias protein_coding protein_coding MGP_C3HHeJ_T0102260.1 MGP_C3HHeJ_G0040223.1 mouse_genomes_project 7 49796656 49797236 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008808.1 MGP_C3HHeJ_G0007107.1 mouse_genomes_project 7 70272422 70282921 - Gm16157 lincRNA lincRNA MGP_C3HHeJ_T0008809.1 MGP_C3HHeJ_G0007107.1 mouse_genomes_project 7 70273035 70284394 - Gm16157 lincRNA lincRNA MGP_C3HHeJ_T0005105.1 MGP_C3HHeJ_G0004340.1 mouse_genomes_project 7 27089523 27092504 + Gm26891 antisense antisense MGP_C3HHeJ_T0082906.1 MGP_C3HHeJ_G0031793.1 mouse_genomes_project 7 35620693 35637913 + MGP_C3HHeJ_P0082906 Slc7a9 protein_coding protein_coding MGP_C3HHeJ_T0082907.1 MGP_C3HHeJ_G0031793.1 mouse_genomes_project 7 35620934 35637913 + MGP_C3HHeJ_P0082907 Slc7a9 protein_coding protein_coding MGP_C3HHeJ_T0082908.1 MGP_C3HHeJ_G0031793.1 mouse_genomes_project 7 35620995 35621968 + Slc7a9 protein_coding retained_intron MGP_C3HHeJ_T0082909.1 MGP_C3HHeJ_G0031793.1 mouse_genomes_project 7 35620997 35637880 + Slc7a9 protein_coding retained_intron MGP_C3HHeJ_T0082910.1 MGP_C3HHeJ_G0031793.1 mouse_genomes_project 7 35621067 35637913 + MGP_C3HHeJ_P0082910 Slc7a9 protein_coding protein_coding MGP_C3HHeJ_T0082911.1 MGP_C3HHeJ_G0031793.1 mouse_genomes_project 7 35621733 35627483 + MGP_C3HHeJ_P0082911 Slc7a9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086243.1 MGP_C3HHeJ_G0032704.1 mouse_genomes_project 7 130864965 130868187 - MGP_C3HHeJ_P0086243 Taok2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086244.1 MGP_C3HHeJ_G0032704.1 mouse_genomes_project 7 130864968 130883992 - MGP_C3HHeJ_P0086244 Taok2 protein_coding protein_coding MGP_C3HHeJ_T0086245.1 MGP_C3HHeJ_G0032704.1 mouse_genomes_project 7 130865795 130866545 - Taok2 protein_coding retained_intron MGP_C3HHeJ_T0086246.1 MGP_C3HHeJ_G0032704.1 mouse_genomes_project 7 130868791 130883992 - MGP_C3HHeJ_P0086246 Taok2 protein_coding protein_coding MGP_C3HHeJ_T0086247.1 MGP_C3HHeJ_G0032704.1 mouse_genomes_project 7 130879085 130882248 - Taok2 protein_coding retained_intron MGP_C3HHeJ_T0005124.1 MGP_C3HHeJ_G0004355.1 mouse_genomes_project 7 34499749 34505863 + Gm12764 antisense antisense MGP_C3HHeJ_T0102181.1 MGP_C3HHeJ_G0040145.1 mouse_genomes_project 7 12419719 12420730 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102302.1 MGP_C3HHeJ_G0040265.1 mouse_genomes_project 7 106877101 106878925 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084190.1 MGP_C3HHeJ_G0032104.1 mouse_genomes_project 7 82323610 82333130 - MGP_C3HHeJ_P0084190 Arpin protein_coding protein_coding MGP_C3HHeJ_T0005149.1 MGP_C3HHeJ_G0004372.1 mouse_genomes_project 7 58996487 59019083 + Gm9962 antisense antisense MGP_C3HHeJ_T0085200.1 MGP_C3HHeJ_G0032437.1 mouse_genomes_project 7 108480796 108481814 - MGP_C3HHeJ_P0085200 Olfr686 protein_coding protein_coding MGP_C3HHeJ_T0082798.1 MGP_C3HHeJ_G0031772.1 mouse_genomes_project 7 34006417 34008373 - MGP_C3HHeJ_P0082798 Scgb2b27 protein_coding protein_coding MGP_C3HHeJ_T0082799.1 MGP_C3HHeJ_G0031772.1 mouse_genomes_project 7 34006428 34008439 - Scgb2b27 protein_coding retained_intron MGP_C3HHeJ_T0082800.1 MGP_C3HHeJ_G0031772.1 mouse_genomes_project 7 34006466 34008364 - MGP_C3HHeJ_P0082800 Scgb2b27 protein_coding protein_coding MGP_C3HHeJ_T0084353.1 MGP_C3HHeJ_G0032128.1 mouse_genomes_project 7 83543125 83591594 + MGP_C3HHeJ_P0084353 Alpk3 protein_coding protein_coding MGP_C3HHeJ_T0084354.1 MGP_C3HHeJ_G0032128.1 mouse_genomes_project 7 83581214 83582077 + Alpk3 protein_coding retained_intron MGP_C3HHeJ_T0085686.1 MGP_C3HHeJ_G0032594.1 mouse_genomes_project 7 121800649 121920000 - MGP_C3HHeJ_P0085686 Smg1 protein_coding protein_coding MGP_C3HHeJ_T0085687.1 MGP_C3HHeJ_G0032594.1 mouse_genomes_project 7 121805837 121891137 - MGP_C3HHeJ_P0085687 Smg1 protein_coding protein_coding MGP_C3HHeJ_T0085688.1 MGP_C3HHeJ_G0032594.1 mouse_genomes_project 7 121813466 121814484 - MGP_C3HHeJ_P0085688 Smg1 protein_coding protein_coding MGP_C3HHeJ_T0085689.1 MGP_C3HHeJ_G0032594.1 mouse_genomes_project 7 121869882 121920000 - Smg1 protein_coding retained_intron MGP_C3HHeJ_T0085690.1 MGP_C3HHeJ_G0032594.1 mouse_genomes_project 7 121875362 121919990 - MGP_C3HHeJ_P0085690 Smg1 protein_coding protein_coding MGP_C3HHeJ_T0085691.1 MGP_C3HHeJ_G0032594.1 mouse_genomes_project 7 121878488 121919712 - Smg1 protein_coding retained_intron MGP_C3HHeJ_T0015561.1 MGP_C3HHeJ_G0013665.1 mouse_genomes_project 7 33214428 33215434 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086351.1 MGP_C3HHeJ_G0032726.1 mouse_genomes_project 7 131266294 131279170 + MGP_C3HHeJ_P0086351 Zfp771 protein_coding protein_coding MGP_C3HHeJ_T0086352.1 MGP_C3HHeJ_G0032726.1 mouse_genomes_project 7 131269751 131270362 + Zfp771 protein_coding processed_transcript MGP_C3HHeJ_T0086353.1 MGP_C3HHeJ_G0032726.1 mouse_genomes_project 7 131269837 131278239 + MGP_C3HHeJ_P0086353 Zfp771 protein_coding protein_coding MGP_C3HHeJ_T0086869.1 MGP_C3HHeJ_G0032835.1 mouse_genomes_project 7 141698602 141823216 - MGP_C3HHeJ_P0086869 Ebf3 protein_coding protein_coding MGP_C3HHeJ_T0086870.1 MGP_C3HHeJ_G0032835.1 mouse_genomes_project 7 141698602 141823216 - MGP_C3HHeJ_P0086870 Ebf3 protein_coding protein_coding MGP_C3HHeJ_T0086871.1 MGP_C3HHeJ_G0032835.1 mouse_genomes_project 7 141698602 141823216 - MGP_C3HHeJ_P0086871 Ebf3 protein_coding protein_coding MGP_C3HHeJ_T0086872.1 MGP_C3HHeJ_G0032835.1 mouse_genomes_project 7 141699627 141823185 - MGP_C3HHeJ_P0086872 Ebf3 protein_coding protein_coding MGP_C3HHeJ_T0081059.1 MGP_C3HHeJ_G0031266.1 mouse_genomes_project 7 1776219 1778811 + MGP_C3HHeJ_P0081059 Rpl28 protein_coding protein_coding MGP_C3HHeJ_T0081060.1 MGP_C3HHeJ_G0031266.1 mouse_genomes_project 7 1776335 1778271 + MGP_C3HHeJ_P0081060 Rpl28 protein_coding protein_coding MGP_C3HHeJ_T0081061.1 MGP_C3HHeJ_G0031266.1 mouse_genomes_project 7 1776691 1777119 + Rpl28 protein_coding retained_intron MGP_C3HHeJ_T0081062.1 MGP_C3HHeJ_G0031266.1 mouse_genomes_project 7 1776887 1778307 + MGP_C3HHeJ_P0081062 Rpl28 protein_coding protein_coding MGP_C3HHeJ_T0081063.1 MGP_C3HHeJ_G0031266.1 mouse_genomes_project 7 1777144 1778307 + Rpl28 protein_coding retained_intron MGP_C3HHeJ_T0084558.1 MGP_C3HHeJ_G0032206.1 mouse_genomes_project 7 93118353 93120702 + MGP_C3HHeJ_P0084558 Ccdc89 protein_coding protein_coding MGP_C3HHeJ_T0085108.1 MGP_C3HHeJ_G0032376.1 mouse_genomes_project 7 107095145 107096593 - MGP_C3HHeJ_P0085108 protein_coding protein_coding MGP_C3HHeJ_T0081085.1 MGP_C3HHeJ_G0031276.1 mouse_genomes_project 7 1999591 2012135 - Zfp579 protein_coding processed_transcript MGP_C3HHeJ_T0081086.1 MGP_C3HHeJ_G0031276.1 mouse_genomes_project 7 2008931 2012238 - Zfp579 protein_coding processed_transcript MGP_C3HHeJ_T0081087.1 MGP_C3HHeJ_G0031276.1 mouse_genomes_project 7 2008931 2011420 - MGP_C3HHeJ_P0081087 Zfp579 protein_coding protein_coding MGP_C3HHeJ_T0081088.1 MGP_C3HHeJ_G0031276.1 mouse_genomes_project 7 2008933 2012181 - MGP_C3HHeJ_P0081088 Zfp579 protein_coding protein_coding MGP_C3HHeJ_T0081089.1 MGP_C3HHeJ_G0031276.1 mouse_genomes_project 7 2010280 2012165 - MGP_C3HHeJ_P0081089 Zfp579 protein_coding protein_coding MGP_C3HHeJ_T0081090.1 MGP_C3HHeJ_G0031276.1 mouse_genomes_project 7 2011090 2012109 - Zfp579 protein_coding processed_transcript MGP_C3HHeJ_T0081717.1 MGP_C3HHeJ_G0031502.1 mouse_genomes_project 7 18264350 18274479 - MGP_C3HHeJ_P0081717 Ceacam16 protein_coding protein_coding MGP_C3HHeJ_T0085768.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123510170 123535133 - MGP_C3HHeJ_P0085768 protein_coding protein_coding MGP_C3HHeJ_T0085769.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123513437 123535133 - MGP_C3HHeJ_P0085769 protein_coding protein_coding MGP_C3HHeJ_T0085773.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123523995 123535141 - protein_coding retained_intron MGP_C3HHeJ_T0085774.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123525243 123535148 - MGP_C3HHeJ_P0085774 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085775.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123525260 123535125 - MGP_C3HHeJ_P0085775 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085776.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123526312 123535224 - MGP_C3HHeJ_P0085776 protein_coding protein_coding MGP_C3HHeJ_T0085777.1 MGP_C3HHeJ_G0032616.1 mouse_genomes_project 7 123527910 123529369 - protein_coding retained_intron MGP_C3HHeJ_T0081758.1 MGP_C3HHeJ_G0031525.1 mouse_genomes_project 7 22920240 22928422 - MGP_C3HHeJ_P0081758 Zfp109 protein_coding protein_coding MGP_C3HHeJ_T0010745.1 MGP_C3HHeJ_G0008878.1 mouse_genomes_project 7 1401254 1401350 - Gm24605 miRNA miRNA MGP_C3HHeJ_T0005214.1 MGP_C3HHeJ_G0004416.1 mouse_genomes_project 7 125987243 126009194 - Gm15489 antisense antisense MGP_C3HHeJ_T0083654.1 MGP_C3HHeJ_G0031992.1 mouse_genomes_project 7 49590793 49592012 - MGP_C3HHeJ_P0083654 Mrgprb4 protein_coding protein_coding MGP_C3HHeJ_T0086027.1 MGP_C3HHeJ_G0032672.1 mouse_genomes_project 7 130221904 130244282 + MGP_C3HHeJ_P0086027 Sbk1 protein_coding protein_coding MGP_C3HHeJ_T0086028.1 MGP_C3HHeJ_G0032672.1 mouse_genomes_project 7 130222685 130239197 + MGP_C3HHeJ_P0086028 Sbk1 protein_coding protein_coding MGP_C3HHeJ_T0086029.1 MGP_C3HHeJ_G0032672.1 mouse_genomes_project 7 130240345 130242086 + MGP_C3HHeJ_P0086029 Sbk1 protein_coding protein_coding MGP_C3HHeJ_T0082932.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35824490 35830137 - MGP_C3HHeJ_P0082932 Pdcd5 protein_coding protein_coding MGP_C3HHeJ_T0082933.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35824520 35829825 - MGP_C3HHeJ_P0082933 Pdcd5 protein_coding protein_coding MGP_C3HHeJ_T0082934.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35824522 35825660 - Pdcd5 protein_coding retained_intron MGP_C3HHeJ_T0082935.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35824524 35826471 - Pdcd5 protein_coding retained_intron MGP_C3HHeJ_T0082936.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35826437 35830120 - Pdcd5 protein_coding retained_intron MGP_C3HHeJ_T0082937.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35826803 35830096 - Pdcd5 protein_coding retained_intron MGP_C3HHeJ_T0082938.1 MGP_C3HHeJ_G0031798.1 mouse_genomes_project 7 35828283 35830082 - Pdcd5 protein_coding retained_intron MGP_C3HHeJ_T0080879.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 582115 584048 + MGP_C3HHeJ_P0080879 protein_coding protein_coding MGP_C3HHeJ_T0080880.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 582854 584428 + MGP_C3HHeJ_P0080880 protein_coding protein_coding MGP_C3HHeJ_T0080881.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 583053 584867 + protein_coding retained_intron MGP_C3HHeJ_T0080882.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 583081 584451 + MGP_C3HHeJ_P0080882 protein_coding protein_coding MGP_C3HHeJ_T0080883.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 583550 584335 + MGP_C3HHeJ_P0080883 protein_coding protein_coding MGP_C3HHeJ_T0080884.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 583760 589690 + MGP_C3HHeJ_P0080884 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080885.1 MGP_C3HHeJ_G0031232.1 mouse_genomes_project 7 584430 589690 + MGP_C3HHeJ_P0080885 protein_coding protein_coding MGP_C3HHeJ_T0083305.1 MGP_C3HHeJ_G0031890.1 mouse_genomes_project 7 45945444 45952173 - MGP_C3HHeJ_P0083305 Ptov1 protein_coding protein_coding MGP_C3HHeJ_T0082325.1 MGP_C3HHeJ_G0031668.1 mouse_genomes_project 7 28086139 28087846 + protein_coding retained_intron MGP_C3HHeJ_T0083661.1 MGP_C3HHeJ_G0031996.1 mouse_genomes_project 7 49979706 49986823 - MGP_C3HHeJ_P0083661 Mrgprb2 protein_coding protein_coding MGP_C3HHeJ_T0008816.1 MGP_C3HHeJ_G0007110.1 mouse_genomes_project 7 72325567 72326371 - Gm29327 lincRNA lincRNA MGP_C3HHeJ_T0082754.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30517264 30525810 - MGP_C3HHeJ_P0082754 Fxyd3 protein_coding protein_coding MGP_C3HHeJ_T0082755.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519627 30521393 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082756.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519629 30525761 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082757.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519629 30520130 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082758.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519629 30520552 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082759.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519630 30525775 - MGP_C3HHeJ_P0082759 Fxyd3 protein_coding protein_coding MGP_C3HHeJ_T0082760.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519631 30521155 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082761.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30519976 30524058 - MGP_C3HHeJ_P0082761 Fxyd3 protein_coding protein_coding MGP_C3HHeJ_T0082762.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30520643 30525760 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082763.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30521119 30525751 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0082764.1 MGP_C3HHeJ_G0031761.1 mouse_genomes_project 7 30522122 30525769 - Fxyd3 protein_coding retained_intron MGP_C3HHeJ_T0086758.1 MGP_C3HHeJ_G0032808.1 mouse_genomes_project 7 136534493 136620161 - MGP_C3HHeJ_P0086758 Chst15 protein_coding protein_coding MGP_C3HHeJ_T0086759.1 MGP_C3HHeJ_G0032808.1 mouse_genomes_project 7 136534493 136619647 - MGP_C3HHeJ_P0086759 Chst15 protein_coding protein_coding MGP_C3HHeJ_T0086760.1 MGP_C3HHeJ_G0032808.1 mouse_genomes_project 7 136534521 136572615 - MGP_C3HHeJ_P0086760 Chst15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086761.1 MGP_C3HHeJ_G0032808.1 mouse_genomes_project 7 136571264 136578875 - Chst15 protein_coding processed_transcript MGP_C3HHeJ_T0097926.1 MGP_C3HHeJ_G0036138.1 mouse_genomes_project 7 111588497 111594269 + pseudogene pseudogene MGP_C3HHeJ_T0082708.1 MGP_C3HHeJ_G0031755.1 mouse_genomes_project 7 30391459 30407116 - MGP_C3HHeJ_P0082708 Lsr protein_coding protein_coding MGP_C3HHeJ_T0082709.1 MGP_C3HHeJ_G0031755.1 mouse_genomes_project 7 30391464 30407154 - MGP_C3HHeJ_P0082709 Lsr protein_coding protein_coding MGP_C3HHeJ_T0082710.1 MGP_C3HHeJ_G0031755.1 mouse_genomes_project 7 30391466 30407117 - MGP_C3HHeJ_P0082710 Lsr protein_coding protein_coding MGP_C3HHeJ_T0082711.1 MGP_C3HHeJ_G0031755.1 mouse_genomes_project 7 30391468 30407012 - MGP_C3HHeJ_P0082711 Lsr protein_coding protein_coding MGP_C3HHeJ_T0082712.1 MGP_C3HHeJ_G0031755.1 mouse_genomes_project 7 30391951 30407105 - MGP_C3HHeJ_P0082712 Lsr protein_coding protein_coding MGP_C3HHeJ_T0005119.1 MGP_C3HHeJ_G0004352.1 mouse_genomes_project 7 30600956 30604136 + G630030J09Rik antisense antisense MGP_C3HHeJ_T0084628.1 MGP_C3HHeJ_G0032223.1 mouse_genomes_project 7 100288264 100296056 + MGP_C3HHeJ_P0084628 Ndufc2 protein_coding protein_coding MGP_C3HHeJ_T0084629.1 MGP_C3HHeJ_G0032223.1 mouse_genomes_project 7 100288364 100295334 + MGP_C3HHeJ_P0084629 Ndufc2 protein_coding protein_coding MGP_C3HHeJ_T0097924.1 MGP_C3HHeJ_G0036136.1 mouse_genomes_project 7 104998800 104999420 + pseudogene pseudogene MGP_C3HHeJ_T0084278.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813171 82824314 - MGP_C3HHeJ_P0084278 Fes protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084279.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813173 82815851 - Fes protein_coding retained_intron MGP_C3HHeJ_T0084280.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813173 82815045 - MGP_C3HHeJ_P0084280 Fes protein_coding protein_coding MGP_C3HHeJ_T0084281.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813173 82824324 - MGP_C3HHeJ_P0084281 Fes protein_coding protein_coding MGP_C3HHeJ_T0084282.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813178 82824249 - MGP_C3HHeJ_P0084282 Fes protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084283.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813179 82824319 - MGP_C3HHeJ_P0084283 Fes protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084284.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82813188 82823797 - MGP_C3HHeJ_P0084284 Fes protein_coding protein_coding MGP_C3HHeJ_T0084285.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82820593 82824273 - MGP_C3HHeJ_P0084285 Fes protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084286.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82823290 82824259 - MGP_C3HHeJ_P0084286 Fes protein_coding protein_coding MGP_C3HHeJ_T0084287.1 MGP_C3HHeJ_G0032118.1 mouse_genomes_project 7 82823416 82824272 - Fes protein_coding retained_intron MGP_C3HHeJ_T0081223.1 MGP_C3HHeJ_G0031353.1 mouse_genomes_project 7 10397198 10414710 + MGP_C3HHeJ_P0081223 Zfp110 protein_coding protein_coding MGP_C3HHeJ_T0081224.1 MGP_C3HHeJ_G0031353.1 mouse_genomes_project 7 10397253 10400200 + Zfp110 protein_coding processed_transcript MGP_C3HHeJ_T0081225.1 MGP_C3HHeJ_G0031353.1 mouse_genomes_project 7 10397474 10400792 + Zfp110 protein_coding retained_intron MGP_C3HHeJ_T0081226.1 MGP_C3HHeJ_G0031353.1 mouse_genomes_project 7 10397920 10414058 + MGP_C3HHeJ_P0081226 Zfp110 protein_coding protein_coding MGP_C3HHeJ_T0081227.1 MGP_C3HHeJ_G0031353.1 mouse_genomes_project 7 10400396 10409038 + Zfp110 protein_coding processed_transcript MGP_C3HHeJ_T0085205.1 MGP_C3HHeJ_G0032442.1 mouse_genomes_project 7 108617292 108618261 - MGP_C3HHeJ_P0085205 Olfr691 protein_coding protein_coding MGP_C3HHeJ_T0015704.1 MGP_C3HHeJ_G0013808.1 mouse_genomes_project 7 125025950 125026692 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084582.1 MGP_C3HHeJ_G0032212.1 mouse_genomes_project 7 95343987 95398139 - MGP_C3HHeJ_P0084582 Ankrd42 protein_coding protein_coding MGP_C3HHeJ_T0084583.1 MGP_C3HHeJ_G0032212.1 mouse_genomes_project 7 95346447 95398179 - MGP_C3HHeJ_P0084583 Ankrd42 protein_coding protein_coding MGP_C3HHeJ_T0084584.1 MGP_C3HHeJ_G0032212.1 mouse_genomes_project 7 95346463 95398173 - MGP_C3HHeJ_P0084584 Ankrd42 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084585.1 MGP_C3HHeJ_G0032212.1 mouse_genomes_project 7 95365819 95371017 - Ankrd42 protein_coding retained_intron MGP_C3HHeJ_T0084586.1 MGP_C3HHeJ_G0032212.1 mouse_genomes_project 7 95369819 95398072 - Ankrd42 protein_coding retained_intron MGP_C3HHeJ_T0084587.1 MGP_C3HHeJ_G0032212.1 mouse_genomes_project 7 95370071 95398167 - Ankrd42 protein_coding processed_transcript MGP_C3HHeJ_T0102255.1 MGP_C3HHeJ_G0040218.1 mouse_genomes_project 7 49502723 49503672 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015547.1 MGP_C3HHeJ_G0013651.1 mouse_genomes_project 7 24789598 24789970 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102263.1 MGP_C3HHeJ_G0040226.1 mouse_genomes_project 7 50111782 50112776 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084959.1 MGP_C3HHeJ_G0032293.1 mouse_genomes_project 7 105062487 105067900 - MGP_C3HHeJ_P0084959 Tomt protein_coding protein_coding MGP_C3HHeJ_T0084961.1 MGP_C3HHeJ_G0032293.1 mouse_genomes_project 7 105063932 105070483 - MGP_C3HHeJ_P0084961 Tomt protein_coding protein_coding MGP_C3HHeJ_T0099580.1 MGP_C3HHeJ_G0037774.1 mouse_genomes_project 7 63805293 63805400 - Gm23431 snRNA snRNA MGP_C3HHeJ_T0081652.1 MGP_C3HHeJ_G0031485.1 mouse_genomes_project 7 17903847 17910175 + MGP_C3HHeJ_P0081652 Nkpd1 protein_coding protein_coding MGP_C3HHeJ_T0085851.1 MGP_C3HHeJ_G0032638.1 mouse_genomes_project 7 124860273 124870714 - MGP_C3HHeJ_P0085851 Igsf6 protein_coding protein_coding MGP_C3HHeJ_T0085558.1 MGP_C3HHeJ_G0032571.1 mouse_genomes_project 7 116767054 116876733 + MGP_C3HHeJ_P0085558 Arntl protein_coding protein_coding MGP_C3HHeJ_T0005248.1 MGP_C3HHeJ_G0004443.1 mouse_genomes_project 7 149439567 149455252 + Faddos antisense antisense MGP_C3HHeJ_T0008713.1 MGP_C3HHeJ_G0007029.1 mouse_genomes_project 7 340504 342267 - 3300002P13Rik lincRNA lincRNA MGP_C3HHeJ_T0100834.1 MGP_C3HHeJ_G0039028.1 mouse_genomes_project 7 61321695 61321765 - Snord107 snoRNA snoRNA MGP_C3HHeJ_T0005234.1 MGP_C3HHeJ_G0004432.1 mouse_genomes_project 7 136974297 136976804 - Gm15582 antisense antisense MGP_C3HHeJ_T0005235.1 MGP_C3HHeJ_G0004433.1 mouse_genomes_project 7 137304898 137308867 - Gm15718 antisense antisense MGP_C3HHeJ_T0084545.1 MGP_C3HHeJ_G0032203.1 mouse_genomes_project 7 92816269 92899541 + MGP_C3HHeJ_P0084545 Picalm protein_coding protein_coding MGP_C3HHeJ_T0084546.1 MGP_C3HHeJ_G0032203.1 mouse_genomes_project 7 92816610 92899409 + MGP_C3HHeJ_P0084546 Picalm protein_coding unknown_likely_coding MGP_C3HHeJ_T0084288.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82824962 82832745 - Furin protein_coding retained_intron MGP_C3HHeJ_T0084289.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82825571 82839156 - MGP_C3HHeJ_P0084289 Furin protein_coding protein_coding MGP_C3HHeJ_T0084290.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82825571 82841825 - MGP_C3HHeJ_P0084290 Furin protein_coding protein_coding MGP_C3HHeJ_T0084291.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82825573 82838101 - MGP_C3HHeJ_P0084291 Furin protein_coding protein_coding MGP_C3HHeJ_T0084292.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82832391 82838971 - MGP_C3HHeJ_P0084292 Furin protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084293.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82832701 82835859 - Furin protein_coding retained_intron MGP_C3HHeJ_T0084294.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82834983 82841830 - MGP_C3HHeJ_P0084294 Furin protein_coding protein_coding MGP_C3HHeJ_T0084295.1 MGP_C3HHeJ_G0032119.1 mouse_genomes_project 7 82835030 82839716 - MGP_C3HHeJ_P0084295 Furin protein_coding protein_coding MGP_C3HHeJ_T0010830.1 MGP_C3HHeJ_G0008963.1 mouse_genomes_project 7 130552663 130552722 - Mir7059 miRNA miRNA MGP_C3HHeJ_T0008900.1 MGP_C3HHeJ_G0007168.1 mouse_genomes_project 7 113460923 113469190 - lincRNA lincRNA MGP_C3HHeJ_T0008901.1 MGP_C3HHeJ_G0007168.1 mouse_genomes_project 7 113460951 113461781 - lincRNA lincRNA MGP_C3HHeJ_T0008902.1 MGP_C3HHeJ_G0007168.1 mouse_genomes_project 7 113460959 113615965 - lincRNA lincRNA MGP_C3HHeJ_T0008903.1 MGP_C3HHeJ_G0007168.1 mouse_genomes_project 7 113463687 113469175 - lincRNA lincRNA MGP_C3HHeJ_T0010776.1 MGP_C3HHeJ_G0008909.1 mouse_genomes_project 7 45932189 45932262 + Mir707 miRNA miRNA MGP_C3HHeJ_T0085355.1 MGP_C3HHeJ_G0032496.1 mouse_genomes_project 7 111109788 111130457 - MGP_C3HHeJ_P0085355 Ovch2 protein_coding protein_coding MGP_C3HHeJ_T0085700.1 MGP_C3HHeJ_G0032598.1 mouse_genomes_project 7 122217771 122269053 - MGP_C3HHeJ_P0085700 Tmc7 protein_coding protein_coding MGP_C3HHeJ_T0085701.1 MGP_C3HHeJ_G0032598.1 mouse_genomes_project 7 122228243 122269001 - Tmc7 protein_coding retained_intron MGP_C3HHeJ_T0085702.1 MGP_C3HHeJ_G0032598.1 mouse_genomes_project 7 122246500 122249585 - Tmc7 protein_coding retained_intron MGP_C3HHeJ_T0085703.1 MGP_C3HHeJ_G0032598.1 mouse_genomes_project 7 122255824 122269026 - Tmc7 protein_coding processed_transcript MGP_C3HHeJ_T0082280.1 MGP_C3HHeJ_G0031659.1 mouse_genomes_project 7 27929699 27953022 + MGP_C3HHeJ_P0082280 Fbxo17 protein_coding protein_coding MGP_C3HHeJ_T0082281.1 MGP_C3HHeJ_G0031659.1 mouse_genomes_project 7 27929727 27953016 + MGP_C3HHeJ_P0082281 Fbxo17 protein_coding protein_coding MGP_C3HHeJ_T0082282.1 MGP_C3HHeJ_G0031659.1 mouse_genomes_project 7 27929751 27939561 + Fbxo17 protein_coding retained_intron MGP_C3HHeJ_T0082283.1 MGP_C3HHeJ_G0031659.1 mouse_genomes_project 7 27929768 27953022 + MGP_C3HHeJ_P0082283 Fbxo17 protein_coding protein_coding MGP_C3HHeJ_T0082284.1 MGP_C3HHeJ_G0031659.1 mouse_genomes_project 7 27946716 27952360 + MGP_C3HHeJ_P0082284 Fbxo17 protein_coding protein_coding MGP_C3HHeJ_T0085398.1 MGP_C3HHeJ_G0032536.1 mouse_genomes_project 7 112445082 112498968 - MGP_C3HHeJ_P0085398 Ric3 protein_coding protein_coding MGP_C3HHeJ_T0085399.1 MGP_C3HHeJ_G0032536.1 mouse_genomes_project 7 112445082 112469363 - MGP_C3HHeJ_P0085399 Ric3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085400.1 MGP_C3HHeJ_G0032536.1 mouse_genomes_project 7 112448718 112498959 - MGP_C3HHeJ_P0085400 Ric3 protein_coding protein_coding MGP_C3HHeJ_T0085401.1 MGP_C3HHeJ_G0032536.1 mouse_genomes_project 7 112456187 112498948 - Ric3 protein_coding retained_intron MGP_C3HHeJ_T0085402.1 MGP_C3HHeJ_G0032536.1 mouse_genomes_project 7 112469025 112498959 - Ric3 protein_coding retained_intron MGP_C3HHeJ_T0085403.1 MGP_C3HHeJ_G0032536.1 mouse_genomes_project 7 112496380 112498942 - Ric3 protein_coding processed_transcript MGP_C3HHeJ_T0099571.1 MGP_C3HHeJ_G0037765.1 mouse_genomes_project 7 38476286 38476344 - Gm22203 snRNA snRNA MGP_C3HHeJ_T0082541.1 MGP_C3HHeJ_G0031721.1 mouse_genomes_project 7 29797016 29799154 - MGP_C3HHeJ_P0082541 Hcst protein_coding protein_coding MGP_C3HHeJ_T0008859.1 MGP_C3HHeJ_G0007142.1 mouse_genomes_project 7 81912045 81939257 + Gm35040 lincRNA lincRNA MGP_C3HHeJ_T0083176.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517035 45520706 + MGP_C3HHeJ_P0083176 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083177.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517061 45519234 + Josd2 protein_coding retained_intron MGP_C3HHeJ_T0083178.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517077 45520703 + MGP_C3HHeJ_P0083178 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083179.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517078 45520705 + MGP_C3HHeJ_P0083179 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083180.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517091 45520590 + MGP_C3HHeJ_P0083180 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083181.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517094 45520716 + MGP_C3HHeJ_P0083181 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083182.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517098 45518368 + Josd2 protein_coding retained_intron MGP_C3HHeJ_T0083183.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517100 45520702 + MGP_C3HHeJ_P0083183 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083184.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517105 45518490 + Josd2 protein_coding retained_intron MGP_C3HHeJ_T0083185.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517127 45520675 + MGP_C3HHeJ_P0083185 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083186.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517131 45518405 + Josd2 protein_coding retained_intron MGP_C3HHeJ_T0083187.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517140 45520230 + MGP_C3HHeJ_P0083187 Josd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083188.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517144 45518904 + Josd2 protein_coding processed_transcript MGP_C3HHeJ_T0083189.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517144 45520705 + MGP_C3HHeJ_P0083189 Josd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083190.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517149 45520697 + MGP_C3HHeJ_P0083190 Josd2 protein_coding protein_coding MGP_C3HHeJ_T0083191.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517206 45520706 + Josd2 protein_coding retained_intron MGP_C3HHeJ_T0083192.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517237 45518026 + Josd2 protein_coding retained_intron MGP_C3HHeJ_T0083193.1 MGP_C3HHeJ_G0031870.1 mouse_genomes_project 7 45517881 45520657 + Josd2 protein_coding processed_transcript MGP_C3HHeJ_T0082417.1 MGP_C3HHeJ_G0031688.1 mouse_genomes_project 7 28823771 28851956 + MGP_C3HHeJ_P0082417 protein_coding protein_coding MGP_C3HHeJ_T0082418.1 MGP_C3HHeJ_G0031688.1 mouse_genomes_project 7 28850614 28851954 + MGP_C3HHeJ_P0082418 protein_coding protein_coding MGP_C3HHeJ_T0085367.1 MGP_C3HHeJ_G0032508.1 mouse_genomes_project 7 111472211 111473276 + MGP_C3HHeJ_P0085367 Olfr483 protein_coding protein_coding MGP_C3HHeJ_T0005139.1 MGP_C3HHeJ_G0004365.1 mouse_genomes_project 7 45404822 45405547 + Gm44780 antisense antisense MGP_C3HHeJ_T0082015.1 MGP_C3HHeJ_G0031585.1 mouse_genomes_project 7 24703264 24717669 - MGP_C3HHeJ_P0082015 Cyp2s1 protein_coding protein_coding MGP_C3HHeJ_T0082016.1 MGP_C3HHeJ_G0031585.1 mouse_genomes_project 7 24703264 24717409 - MGP_C3HHeJ_P0082016 Cyp2s1 protein_coding protein_coding MGP_C3HHeJ_T0082017.1 MGP_C3HHeJ_G0031585.1 mouse_genomes_project 7 24704937 24717314 - Cyp2s1 protein_coding retained_intron MGP_C3HHeJ_T0082018.1 MGP_C3HHeJ_G0031585.1 mouse_genomes_project 7 24710089 24716148 - MGP_C3HHeJ_P0082018 Cyp2s1 protein_coding protein_coding MGP_C3HHeJ_T0002170.1 MGP_C3HHeJ_G0002091.1 mouse_genomes_project 7 36930022 36930944 + TEC TEC MGP_C3HHeJ_T0087399.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800240 147814634 + MGP_C3HHeJ_P0087399 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087400.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800254 147802679 + Tspan32 protein_coding retained_intron MGP_C3HHeJ_T0087401.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800832 147814792 + MGP_C3HHeJ_P0087401 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087402.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800857 147814631 + MGP_C3HHeJ_P0087402 Tspan32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087403.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800865 147814634 + MGP_C3HHeJ_P0087403 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087404.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800879 147814634 + MGP_C3HHeJ_P0087404 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087405.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800893 147814634 + MGP_C3HHeJ_P0087405 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087406.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147800893 147814634 + MGP_C3HHeJ_P0087406 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087407.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147801113 147813887 + MGP_C3HHeJ_P0087407 Tspan32 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087408.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147801122 147812821 + MGP_C3HHeJ_P0087408 Tspan32 protein_coding protein_coding MGP_C3HHeJ_T0087409.1 MGP_C3HHeJ_G0032966.1 mouse_genomes_project 7 147812556 147814051 + Tspan32 protein_coding retained_intron MGP_C3HHeJ_T0008953.1 MGP_C3HHeJ_G0007198.1 mouse_genomes_project 7 132618063 132630048 - Gm45018 lincRNA lincRNA MGP_C3HHeJ_T0083021.1 MGP_C3HHeJ_G0031818.1 mouse_genomes_project 7 42575932 42600511 - MGP_C3HHeJ_P0083021 Vmn2r58 protein_coding protein_coding MGP_C3HHeJ_T0082994.1 MGP_C3HHeJ_G0031808.1 mouse_genomes_project 7 39986188 40005958 + MGP_C3HHeJ_P0082994 Zfp619 protein_coding protein_coding MGP_C3HHeJ_T0081163.1 MGP_C3HHeJ_G0031314.1 mouse_genomes_project 7 3588433 3589487 - MGP_C3HHeJ_P0081163 Olfr1349 protein_coding protein_coding MGP_C3HHeJ_T0102319.1 MGP_C3HHeJ_G0040282.1 mouse_genomes_project 7 146926943 146927616 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085339.1 MGP_C3HHeJ_G0032487.1 mouse_genomes_project 7 110442940 110443888 - MGP_C3HHeJ_P0085339 protein_coding protein_coding MGP_C3HHeJ_T0015562.1 MGP_C3HHeJ_G0013666.1 mouse_genomes_project 7 33214429 33215426 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086204.1 MGP_C3HHeJ_G0032699.1 mouse_genomes_project 7 130794860 130829055 + MGP_C3HHeJ_P0086204 Fam57b protein_coding protein_coding MGP_C3HHeJ_T0086205.1 MGP_C3HHeJ_G0032699.1 mouse_genomes_project 7 130810613 130820816 + Fam57b protein_coding processed_transcript MGP_C3HHeJ_T0086206.1 MGP_C3HHeJ_G0032699.1 mouse_genomes_project 7 130811966 130815160 + Fam57b protein_coding processed_transcript MGP_C3HHeJ_T0086207.1 MGP_C3HHeJ_G0032699.1 mouse_genomes_project 7 130814814 130826372 + MGP_C3HHeJ_P0086207 Fam57b protein_coding protein_coding MGP_C3HHeJ_T0086208.1 MGP_C3HHeJ_G0032699.1 mouse_genomes_project 7 130814815 130829059 + MGP_C3HHeJ_P0086208 Fam57b protein_coding protein_coding MGP_C3HHeJ_T0086209.1 MGP_C3HHeJ_G0032699.1 mouse_genomes_project 7 130822928 130829057 + MGP_C3HHeJ_P0086209 Fam57b protein_coding protein_coding MGP_C3HHeJ_T0085441.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113349376 113352296 - Dennd5a protein_coding retained_intron MGP_C3HHeJ_T0085442.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113349376 113417662 - MGP_C3HHeJ_P0085442 Dennd5a protein_coding protein_coding MGP_C3HHeJ_T0085443.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113349376 113417732 - MGP_C3HHeJ_P0085443 Dennd5a protein_coding protein_coding MGP_C3HHeJ_T0085444.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113351976 113353153 - Dennd5a protein_coding retained_intron MGP_C3HHeJ_T0085445.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113354668 113356061 - Dennd5a protein_coding retained_intron MGP_C3HHeJ_T0085446.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113362834 113375862 - Dennd5a protein_coding retained_intron MGP_C3HHeJ_T0085447.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113376410 113380159 - Dennd5a protein_coding processed_transcript MGP_C3HHeJ_T0085448.1 MGP_C3HHeJ_G0032548.1 mouse_genomes_project 7 113388668 113417585 - Dennd5a protein_coding processed_transcript MGP_C3HHeJ_T0086500.1 MGP_C3HHeJ_G0032756.1 mouse_genomes_project 7 131936859 131952143 - MGP_C3HHeJ_P0086500 Zfp668 protein_coding protein_coding MGP_C3HHeJ_T0086501.1 MGP_C3HHeJ_G0032756.1 mouse_genomes_project 7 131939530 131952095 - MGP_C3HHeJ_P0086501 Zfp668 protein_coding protein_coding MGP_C3HHeJ_T0086502.1 MGP_C3HHeJ_G0032756.1 mouse_genomes_project 7 131939806 131950961 - MGP_C3HHeJ_P0086502 Zfp668 protein_coding protein_coding MGP_C3HHeJ_T0086503.1 MGP_C3HHeJ_G0032756.1 mouse_genomes_project 7 131939806 131952092 - MGP_C3HHeJ_P0086503 Zfp668 protein_coding protein_coding MGP_C3HHeJ_T0086504.1 MGP_C3HHeJ_G0032756.1 mouse_genomes_project 7 131941854 131950972 - MGP_C3HHeJ_P0086504 Zfp668 protein_coding protein_coding MGP_C3HHeJ_T0086505.1 MGP_C3HHeJ_G0032756.1 mouse_genomes_project 7 131949086 131951449 - Zfp668 protein_coding processed_transcript MGP_C3HHeJ_T0081582.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17540662 17574007 + MGP_C3HHeJ_P0081582 protein_coding protein_coding MGP_C3HHeJ_T0081583.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546366 17574233 + MGP_C3HHeJ_P0081583 protein_coding protein_coding MGP_C3HHeJ_T0081584.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546377 17574229 + MGP_C3HHeJ_P0081584 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081585.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546400 17574230 + MGP_C3HHeJ_P0081585 protein_coding protein_coding MGP_C3HHeJ_T0081586.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546412 17550193 + MGP_C3HHeJ_P0081586 protein_coding protein_coding MGP_C3HHeJ_T0081587.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546433 17551631 + MGP_C3HHeJ_P0081587 protein_coding protein_coding MGP_C3HHeJ_T0081588.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546527 17550196 + protein_coding processed_transcript MGP_C3HHeJ_T0081589.1 MGP_C3HHeJ_G0031467.1 mouse_genomes_project 7 17546801 17551644 + protein_coding retained_intron MGP_C3HHeJ_T0018195.1 MGP_C3HHeJ_G0015453.1 mouse_genomes_project 7 131498627 131507038 + processed_transcript processed_transcript MGP_C3HHeJ_T0081055.1 MGP_C3HHeJ_G0031264.1 mouse_genomes_project 7 1765321 1766726 + MGP_C3HHeJ_P0081055 Tmem190 protein_coding protein_coding MGP_C3HHeJ_T0081056.1 MGP_C3HHeJ_G0031264.1 mouse_genomes_project 7 1765335 1765743 + Tmem190 protein_coding retained_intron MGP_C3HHeJ_T0082447.1 MGP_C3HHeJ_G0031697.1 mouse_genomes_project 7 29309527 29311899 + MGP_C3HHeJ_P0082447 protein_coding protein_coding MGP_C3HHeJ_T0085183.1 MGP_C3HHeJ_G0032420.1 mouse_genomes_project 7 107824403 107825363 + MGP_C3HHeJ_P0085183 protein_coding protein_coding MGP_C3HHeJ_T0081256.1 MGP_C3HHeJ_G0031361.1 mouse_genomes_project 7 10581615 10585884 - MGP_C3HHeJ_P0081256 Zbtb45 protein_coding protein_coding MGP_C3HHeJ_T0081257.1 MGP_C3HHeJ_G0031361.1 mouse_genomes_project 7 10581740 10585862 - MGP_C3HHeJ_P0081257 Zbtb45 protein_coding protein_coding MGP_C3HHeJ_T0015643.1 MGP_C3HHeJ_G0013747.1 mouse_genomes_project 7 77578445 77578649 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005245.1 MGP_C3HHeJ_G0004440.1 mouse_genomes_project 7 148120167 148128045 - antisense antisense MGP_C3HHeJ_T0087296.1 MGP_C3HHeJ_G0032946.1 mouse_genomes_project 7 146915299 146918039 + MGP_C3HHeJ_P0087296 protein_coding protein_coding MGP_C3HHeJ_T0015504.1 MGP_C3HHeJ_G0013608.1 mouse_genomes_project 7 10068167 10069131 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002267.1 MGP_C3HHeJ_G0002187.1 mouse_genomes_project 7 130000813 130002355 - TEC TEC MGP_C3HHeJ_T0082030.1 MGP_C3HHeJ_G0031592.1 mouse_genomes_project 7 25296167 25372180 - MGP_C3HHeJ_P0082030 Nlrp9c protein_coding protein_coding MGP_C3HHeJ_T0082031.1 MGP_C3HHeJ_G0031592.1 mouse_genomes_project 7 25342462 25372185 - MGP_C3HHeJ_P0082031 Nlrp9c protein_coding protein_coding MGP_C3HHeJ_T0082032.1 MGP_C3HHeJ_G0031592.1 mouse_genomes_project 7 25354390 25381642 - Nlrp9c protein_coding retained_intron MGP_C3HHeJ_T0082033.1 MGP_C3HHeJ_G0031592.1 mouse_genomes_project 7 25354390 25381638 - Nlrp9c protein_coding processed_transcript MGP_C3HHeJ_T0082034.1 MGP_C3HHeJ_G0031592.1 mouse_genomes_project 7 25370209 25381642 - Nlrp9c protein_coding retained_intron MGP_C3HHeJ_T0008898.1 MGP_C3HHeJ_G0007166.1 mouse_genomes_project 7 110559450 110611717 + Platr28 lincRNA lincRNA MGP_C3HHeJ_T0082285.1 MGP_C3HHeJ_G0031660.1 mouse_genomes_project 7 27954518 27954945 - Mrps12 protein_coding processed_transcript MGP_C3HHeJ_T0082286.1 MGP_C3HHeJ_G0031660.1 mouse_genomes_project 7 27954518 27956640 - MGP_C3HHeJ_P0082286 Mrps12 protein_coding protein_coding MGP_C3HHeJ_T0082287.1 MGP_C3HHeJ_G0031660.1 mouse_genomes_project 7 27954519 27956690 - MGP_C3HHeJ_P0082287 Mrps12 protein_coding protein_coding MGP_C3HHeJ_T0082288.1 MGP_C3HHeJ_G0031660.1 mouse_genomes_project 7 27954769 27955699 - MGP_C3HHeJ_P0082288 Mrps12 protein_coding protein_coding MGP_C3HHeJ_T0084985.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105239312 105262725 + MGP_C3HHeJ_P0084985 Xndc1 protein_coding protein_coding MGP_C3HHeJ_T0084986.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105239321 105259245 + Xndc1 protein_coding retained_intron MGP_C3HHeJ_T0084987.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105239323 105306268 + Xndc1 protein_coding processed_transcript MGP_C3HHeJ_T0084988.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105239397 105256850 + MGP_C3HHeJ_P0084988 Xndc1 protein_coding protein_coding MGP_C3HHeJ_T0084991.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105239562 105262044 + MGP_C3HHeJ_P0084991 Xndc1 protein_coding protein_coding MGP_C3HHeJ_T0084995.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105251448 105258200 + Xndc1 protein_coding retained_intron MGP_C3HHeJ_T0084996.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105257717 105262728 + MGP_C3HHeJ_P0084996 Xndc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084997.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105260017 105261554 + Xndc1 protein_coding processed_transcript MGP_C3HHeJ_T0084998.1 MGP_C3HHeJ_G0032299.1 mouse_genomes_project 7 105260020 105261484 + Xndc1 protein_coding retained_intron MGP_C3HHeJ_T0085808.1 MGP_C3HHeJ_G0032626.1 mouse_genomes_project 7 124080192 124116458 + Abca15 protein_coding retained_intron MGP_C3HHeJ_T0085809.1 MGP_C3HHeJ_G0032626.1 mouse_genomes_project 7 124080192 124163228 + MGP_C3HHeJ_P0085809 Abca15 protein_coding protein_coding MGP_C3HHeJ_T0085810.1 MGP_C3HHeJ_G0032626.1 mouse_genomes_project 7 124080192 124163228 + MGP_C3HHeJ_P0085810 Abca15 protein_coding protein_coding MGP_C3HHeJ_T0100853.1 MGP_C3HHeJ_G0039047.1 mouse_genomes_project 7 113485754 113485887 + Gm25636 snoRNA snoRNA MGP_C3HHeJ_T0085094.1 MGP_C3HHeJ_G0032362.1 mouse_genomes_project 7 106809094 106810036 + MGP_C3HHeJ_P0085094 Olfr615 protein_coding protein_coding MGP_C3HHeJ_T0099617.1 MGP_C3HHeJ_G0037811.1 mouse_genomes_project 7 134229935 134230045 + Gm23847 snRNA snRNA MGP_C3HHeJ_T0082062.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26227331 26238146 - MGP_C3HHeJ_P0082062 Rab4b protein_coding protein_coding MGP_C3HHeJ_T0082063.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26227333 26238060 - MGP_C3HHeJ_P0082063 Rab4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082064.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26227334 26238065 - Rab4b protein_coding retained_intron MGP_C3HHeJ_T0082066.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26227602 26238138 - Rab4b protein_coding processed_transcript MGP_C3HHeJ_T0082067.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26231746 26233860 - Rab4b protein_coding retained_intron MGP_C3HHeJ_T0082068.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26232057 26233807 - Rab4b protein_coding processed_transcript MGP_C3HHeJ_T0082069.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26235144 26238126 - Rab4b protein_coding processed_transcript MGP_C3HHeJ_T0082070.1 MGP_C3HHeJ_G0031604.1 mouse_genomes_project 7 26235175 26238073 - Rab4b protein_coding processed_transcript MGP_C3HHeJ_T0083246.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45797943 45810587 - MGP_C3HHeJ_P0083246 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0083247.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45797953 45814979 - MGP_C3HHeJ_P0083247 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0083248.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45797965 45814753 - MGP_C3HHeJ_P0083248 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0083249.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45797977 45814411 - MGP_C3HHeJ_P0083249 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0083250.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45798471 45814668 - MGP_C3HHeJ_P0083250 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0083251.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45800921 45814711 - MGP_C3HHeJ_P0083251 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0083252.1 MGP_C3HHeJ_G0031883.1 mouse_genomes_project 7 45801072 45817412 - MGP_C3HHeJ_P0083252 Zfp473 protein_coding protein_coding MGP_C3HHeJ_T0102310.1 MGP_C3HHeJ_G0040273.1 mouse_genomes_project 7 107289701 107290163 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086120.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130633178 130649234 + Sgf29 protein_coding processed_transcript MGP_C3HHeJ_T0086121.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130633178 130658155 + MGP_C3HHeJ_P0086121 Sgf29 protein_coding protein_coding MGP_C3HHeJ_T0086122.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130633181 130650180 + MGP_C3HHeJ_P0086122 Sgf29 protein_coding protein_coding MGP_C3HHeJ_T0086123.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130633191 130649329 + Sgf29 protein_coding retained_intron MGP_C3HHeJ_T0086124.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130633216 130657111 + Sgf29 protein_coding retained_intron MGP_C3HHeJ_T0086125.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130633271 130657469 + MGP_C3HHeJ_P0086125 Sgf29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086126.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130646301 130657548 + MGP_C3HHeJ_P0086126 Sgf29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086127.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130649022 130655918 + Sgf29 protein_coding retained_intron MGP_C3HHeJ_T0086128.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130656806 130657622 + MGP_C3HHeJ_P0086128 Sgf29 protein_coding protein_coding MGP_C3HHeJ_T0086129.1 MGP_C3HHeJ_G0032688.1 mouse_genomes_project 7 130657260 130658009 + Sgf29 protein_coding processed_transcript MGP_C3HHeJ_T0102226.1 MGP_C3HHeJ_G0040189.1 mouse_genomes_project 7 43162245 43166543 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018105.1 MGP_C3HHeJ_G0015416.1 mouse_genomes_project 7 23592458 23617312 + Gm5893 processed_transcript lincRNA MGP_C3HHeJ_T0018106.1 MGP_C3HHeJ_G0015416.1 mouse_genomes_project 7 23592458 23617295 + Gm5893 processed_transcript processed_transcript MGP_C3HHeJ_T0018107.1 MGP_C3HHeJ_G0015416.1 mouse_genomes_project 7 23595772 23599536 + Gm5893 processed_transcript retained_intron MGP_C3HHeJ_T0018108.1 MGP_C3HHeJ_G0015416.1 mouse_genomes_project 7 23601948 23617310 + Gm5893 processed_transcript retained_intron MGP_C3HHeJ_T0010788.1 MGP_C3HHeJ_G0008921.1 mouse_genomes_project 7 63397775 63397855 - Gm23962 miRNA miRNA MGP_C3HHeJ_T0010803.1 MGP_C3HHeJ_G0008936.1 mouse_genomes_project 7 63815144 63815212 - Mir344f miRNA miRNA MGP_C3HHeJ_T0015681.1 MGP_C3HHeJ_G0013785.1 mouse_genomes_project 7 103233466 103234678 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084739.1 MGP_C3HHeJ_G0032246.1 mouse_genomes_project 7 102185230 102207627 - MGP_C3HHeJ_P0084739 Mogat2 protein_coding protein_coding MGP_C3HHeJ_T0084740.1 MGP_C3HHeJ_G0032246.1 mouse_genomes_project 7 102194004 102207602 - Mogat2 protein_coding processed_transcript MGP_C3HHeJ_T0080897.1 MGP_C3HHeJ_G0031235.1 mouse_genomes_project 7 644276 652047 - MGP_C3HHeJ_P0080897 protein_coding protein_coding MGP_C3HHeJ_T0081316.1 MGP_C3HHeJ_G0031379.1 mouse_genomes_project 7 11848648 11894429 - MGP_C3HHeJ_P0081316 protein_coding protein_coding MGP_C3HHeJ_T0102211.1 MGP_C3HHeJ_G0040174.1 mouse_genomes_project 7 31020574 31021820 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085421.1 MGP_C3HHeJ_G0032541.1 mouse_genomes_project 7 112961403 113056102 - MGP_C3HHeJ_P0085421 St5 protein_coding protein_coding MGP_C3HHeJ_T0085422.1 MGP_C3HHeJ_G0032541.1 mouse_genomes_project 7 112961403 113056102 - MGP_C3HHeJ_P0085422 St5 protein_coding protein_coding MGP_C3HHeJ_T0085423.1 MGP_C3HHeJ_G0032541.1 mouse_genomes_project 7 112961412 113055523 - MGP_C3HHeJ_P0085423 St5 protein_coding protein_coding MGP_C3HHeJ_T0085424.1 MGP_C3HHeJ_G0032541.1 mouse_genomes_project 7 112961412 113055523 - MGP_C3HHeJ_P0085424 St5 protein_coding protein_coding MGP_C3HHeJ_T0083826.1 MGP_C3HHeJ_G0032036.1 mouse_genomes_project 7 65741075 65807057 - MGP_C3HHeJ_P0083826 Klf13 protein_coding protein_coding MGP_C3HHeJ_T0083827.1 MGP_C3HHeJ_G0032036.1 mouse_genomes_project 7 65746107 65804443 - MGP_C3HHeJ_P0083827 Klf13 protein_coding protein_coding MGP_C3HHeJ_T0083828.1 MGP_C3HHeJ_G0032036.1 mouse_genomes_project 7 65746124 65790107 - MGP_C3HHeJ_P0083828 Klf13 protein_coding protein_coding MGP_C3HHeJ_T0083830.1 MGP_C3HHeJ_G0032036.1 mouse_genomes_project 7 65803540 65804474 - Klf13 protein_coding retained_intron MGP_C3HHeJ_T0086066.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432260 130440357 - MGP_C3HHeJ_P0086066 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0086067.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432262 130440370 - MGP_C3HHeJ_P0086067 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0086068.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432263 130440397 - MGP_C3HHeJ_P0086068 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0086069.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432265 130440091 - MGP_C3HHeJ_P0086069 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0086070.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432265 130440089 - MGP_C3HHeJ_P0086070 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0086071.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432265 130438335 - MGP_C3HHeJ_P0086071 Sh2b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086072.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130432271 130440317 - MGP_C3HHeJ_P0086072 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0086073.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130434165 130435461 - Sh2b1 protein_coding processed_transcript MGP_C3HHeJ_T0086074.1 MGP_C3HHeJ_G0032679.1 mouse_genomes_project 7 130438058 130440691 - MGP_C3HHeJ_P0086074 Sh2b1 protein_coding protein_coding MGP_C3HHeJ_T0084004.1 MGP_C3HHeJ_G0032070.1 mouse_genomes_project 7 73455257 73459175 - MGP_C3HHeJ_P0084004 Gm10295 protein_coding protein_coding MGP_C3HHeJ_T0082295.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27982055 28003949 + Sirt2 protein_coding processed_transcript MGP_C3HHeJ_T0082296.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27982072 28003954 + MGP_C3HHeJ_P0082296 Sirt2 protein_coding protein_coding MGP_C3HHeJ_T0082297.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27982087 28003949 + MGP_C3HHeJ_P0082297 Sirt2 protein_coding protein_coding MGP_C3HHeJ_T0082298.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27982574 28003949 + Sirt2 protein_coding processed_transcript MGP_C3HHeJ_T0082299.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27992139 27992970 + Sirt2 protein_coding retained_intron MGP_C3HHeJ_T0082300.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27992289 27998628 + Sirt2 protein_coding retained_intron MGP_C3HHeJ_T0082301.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 27999914 28003056 + Sirt2 protein_coding processed_transcript MGP_C3HHeJ_T0082302.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 28000671 28002915 + Sirt2 protein_coding retained_intron MGP_C3HHeJ_T0082303.1 MGP_C3HHeJ_G0031664.1 mouse_genomes_project 7 28000845 28003549 + Sirt2 protein_coding retained_intron MGP_C3HHeJ_T0102173.1 MGP_C3HHeJ_G0040137.1 mouse_genomes_project 7 11944454 11955760 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085322.1 MGP_C3HHeJ_G0032471.1 mouse_genomes_project 7 110152199 110158748 + MGP_C3HHeJ_P0085322 Olfr701 protein_coding protein_coding MGP_C3HHeJ_T0085323.1 MGP_C3HHeJ_G0032471.1 mouse_genomes_project 7 110152234 110157185 + MGP_C3HHeJ_P0085323 Olfr701 protein_coding protein_coding MGP_C3HHeJ_T0002202.1 MGP_C3HHeJ_G0002123.1 mouse_genomes_project 7 65623332 65623691 + TEC TEC MGP_C3HHeJ_T0102284.1 MGP_C3HHeJ_G0040247.1 mouse_genomes_project 7 88449805 88450113 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084805.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103417224 103529844 + MGP_C3HHeJ_P0084805 C2cd3 protein_coding protein_coding MGP_C3HHeJ_T0084806.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103417224 103530538 + MGP_C3HHeJ_P0084806 C2cd3 protein_coding protein_coding MGP_C3HHeJ_T0084807.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103417237 103475721 + MGP_C3HHeJ_P0084807 C2cd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084808.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103417272 103459607 + C2cd3 protein_coding retained_intron MGP_C3HHeJ_T0084809.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103443034 103515304 + MGP_C3HHeJ_P0084809 C2cd3 protein_coding protein_coding MGP_C3HHeJ_T0084810.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103472863 103475429 + C2cd3 protein_coding retained_intron MGP_C3HHeJ_T0084811.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103489850 103493053 + MGP_C3HHeJ_P0084811 C2cd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084812.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103490882 103530540 + MGP_C3HHeJ_P0084812 C2cd3 protein_coding protein_coding MGP_C3HHeJ_T0084813.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103504111 103505510 + C2cd3 protein_coding retained_intron MGP_C3HHeJ_T0084814.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103509610 103515693 + MGP_C3HHeJ_P0084814 C2cd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084815.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103512204 103515652 + C2cd3 protein_coding retained_intron MGP_C3HHeJ_T0084816.1 MGP_C3HHeJ_G0032268.1 mouse_genomes_project 7 103524960 103530540 + MGP_C3HHeJ_P0084816 C2cd3 protein_coding protein_coding MGP_C3HHeJ_T0097928.1 MGP_C3HHeJ_G0036140.1 mouse_genomes_project 7 116506845 116508272 + pseudogene pseudogene MGP_C3HHeJ_T0081230.1 MGP_C3HHeJ_G0031355.1 mouse_genomes_project 7 10465179 10476568 + MGP_C3HHeJ_P0081230 Zscan22 protein_coding protein_coding MGP_C3HHeJ_T0081231.1 MGP_C3HHeJ_G0031355.1 mouse_genomes_project 7 10465200 10477412 + MGP_C3HHeJ_P0081231 Zscan22 protein_coding protein_coding MGP_C3HHeJ_T0081232.1 MGP_C3HHeJ_G0031355.1 mouse_genomes_project 7 10465205 10475866 + MGP_C3HHeJ_P0081232 Zscan22 protein_coding protein_coding MGP_C3HHeJ_T0081233.1 MGP_C3HHeJ_G0031355.1 mouse_genomes_project 7 10465231 10476571 + MGP_C3HHeJ_P0081233 Zscan22 protein_coding protein_coding MGP_C3HHeJ_T0005244.1 MGP_C3HHeJ_G0004439.1 mouse_genomes_project 7 148007445 148093893 - Kcnq1ot1 antisense antisense MGP_C3HHeJ_T0102180.1 MGP_C3HHeJ_G0040144.1 mouse_genomes_project 7 12359948 12360426 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081529.1 MGP_C3HHeJ_G0031452.1 mouse_genomes_project 7 17265231 17305015 + MGP_C3HHeJ_P0081529 protein_coding protein_coding MGP_C3HHeJ_T0010799.1 MGP_C3HHeJ_G0008932.1 mouse_genomes_project 7 63567786 63567878 - Mir344c miRNA miRNA MGP_C3HHeJ_T0002226.1 MGP_C3HHeJ_G0002146.1 mouse_genomes_project 7 78254397 78256546 + TEC TEC MGP_C3HHeJ_T0082632.1 MGP_C3HHeJ_G0031739.1 mouse_genomes_project 7 30042623 30051947 - MGP_C3HHeJ_P0082632 Rbm42 protein_coding protein_coding MGP_C3HHeJ_T0082633.1 MGP_C3HHeJ_G0031739.1 mouse_genomes_project 7 30042628 30051774 - MGP_C3HHeJ_P0082633 Rbm42 protein_coding protein_coding MGP_C3HHeJ_T0082634.1 MGP_C3HHeJ_G0031739.1 mouse_genomes_project 7 30045729 30047617 - Rbm42 protein_coding retained_intron MGP_C3HHeJ_T0083092.1 MGP_C3HHeJ_G0031840.1 mouse_genomes_project 7 44641705 44657613 + MGP_C3HHeJ_P0083092 Ceacam18 protein_coding protein_coding MGP_C3HHeJ_T0102171.1 MGP_C3HHeJ_G0040135.1 mouse_genomes_project 7 11151145 11151591 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005157.1 MGP_C3HHeJ_G0004379.1 mouse_genomes_project 7 80909211 80911420 + Gm9885 antisense antisense MGP_C3HHeJ_T0005158.1 MGP_C3HHeJ_G0004379.1 mouse_genomes_project 7 80909211 80911416 + Gm9885 antisense antisense MGP_C3HHeJ_T0015733.1 MGP_C3HHeJ_G0013837.1 mouse_genomes_project 7 144294400 144295898 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005567.1 MGP_C3HHeJ_G0004678.1 mouse_genomes_project 7 120063985 120064735 + AV356131 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0002193.1 MGP_C3HHeJ_G0002114.1 mouse_genomes_project 7 56550390 56551162 - TEC TEC MGP_C3HHeJ_T0083555.1 MGP_C3HHeJ_G0031963.1 mouse_genomes_project 7 47137727 47209635 - MGP_C3HHeJ_P0083555 Abcc6 protein_coding protein_coding MGP_C3HHeJ_T0083556.1 MGP_C3HHeJ_G0031963.1 mouse_genomes_project 7 47138173 47209614 - MGP_C3HHeJ_P0083556 Abcc6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083557.1 MGP_C3HHeJ_G0031963.1 mouse_genomes_project 7 47138233 47139024 - Abcc6 protein_coding retained_intron MGP_C3HHeJ_T0083558.1 MGP_C3HHeJ_G0031963.1 mouse_genomes_project 7 47159983 47171341 - Abcc6 protein_coding retained_intron MGP_C3HHeJ_T0015501.1 MGP_C3HHeJ_G0013605.1 mouse_genomes_project 7 3060966 3061413 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100827.1 MGP_C3HHeJ_G0039021.1 mouse_genomes_project 7 60915700 60915769 - Gm25499 snoRNA snoRNA MGP_C3HHeJ_T0002197.1 MGP_C3HHeJ_G0002118.1 mouse_genomes_project 7 57533511 57535250 - TEC TEC MGP_C3HHeJ_T0081362.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14056052 14057682 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081363.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14056052 14064704 + MGP_C3HHeJ_P0081363 Kptn protein_coding protein_coding MGP_C3HHeJ_T0081364.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14056086 14057130 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081365.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14056376 14061053 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081366.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14056608 14057121 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081367.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14060003 14061016 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081368.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14060070 14061195 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081369.1 MGP_C3HHeJ_G0031400.1 mouse_genomes_project 7 14062601 14064552 + Kptn protein_coding retained_intron MGP_C3HHeJ_T0081716.1 MGP_C3HHeJ_G0031501.1 mouse_genomes_project 7 18264256 18270588 + MGP_C3HHeJ_P0081716 Gm19345 protein_coding protein_coding MGP_C3HHeJ_T0081321.1 MGP_C3HHeJ_G0031383.1 mouse_genomes_project 7 12176453 12205233 - MGP_C3HHeJ_P0081321 Sult2a8 protein_coding protein_coding MGP_C3HHeJ_T0081322.1 MGP_C3HHeJ_G0031383.1 mouse_genomes_project 7 12176456 12211916 - MGP_C3HHeJ_P0081322 Sult2a8 protein_coding protein_coding MGP_C3HHeJ_T0081323.1 MGP_C3HHeJ_G0031383.1 mouse_genomes_project 7 12181918 12212099 - MGP_C3HHeJ_P0081323 Sult2a8 protein_coding protein_coding MGP_C3HHeJ_T0102274.1 MGP_C3HHeJ_G0040237.1 mouse_genomes_project 7 87883203 87925547 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083262.1 MGP_C3HHeJ_G0031885.1 mouse_genomes_project 7 45889400 45892787 - MGP_C3HHeJ_P0083262 Atf5 protein_coding protein_coding MGP_C3HHeJ_T0083263.1 MGP_C3HHeJ_G0031885.1 mouse_genomes_project 7 45889401 45894200 - MGP_C3HHeJ_P0083263 Atf5 protein_coding protein_coding MGP_C3HHeJ_T0084312.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83161332 83264528 - MGP_C3HHeJ_P0084312 Iqgap1 protein_coding protein_coding MGP_C3HHeJ_T0084313.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83178497 83181949 - MGP_C3HHeJ_P0084313 Iqgap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084314.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83194797 83197574 - Iqgap1 protein_coding retained_intron MGP_C3HHeJ_T0084315.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83203895 83264375 - Iqgap1 protein_coding retained_intron MGP_C3HHeJ_T0084316.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83209585 83264393 - Iqgap1 protein_coding retained_intron MGP_C3HHeJ_T0084317.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83218120 83280631 - MGP_C3HHeJ_P0084317 Iqgap1 protein_coding protein_coding MGP_C3HHeJ_T0084318.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83223940 83289709 - MGP_C3HHeJ_P0084318 Iqgap1 protein_coding protein_coding MGP_C3HHeJ_T0084319.1 MGP_C3HHeJ_G0032122.1 mouse_genomes_project 7 83255083 83264384 - Iqgap1 protein_coding retained_intron MGP_C3HHeJ_T0102206.1 MGP_C3HHeJ_G0040169.1 mouse_genomes_project 7 30347260 30347749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018172.1 MGP_C3HHeJ_G0015441.1 mouse_genomes_project 7 87285151 87366905 + 2610206C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018173.1 MGP_C3HHeJ_G0015441.1 mouse_genomes_project 7 87366058 87366376 + 2610206C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0082266.1 MGP_C3HHeJ_G0031656.1 mouse_genomes_project 7 27743329 27746978 - MGP_C3HHeJ_P0082266 Nccrp1 protein_coding protein_coding MGP_C3HHeJ_T0086580.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132351719 132361571 + MGP_C3HHeJ_P0086580 Tgfb1i1 protein_coding protein_coding MGP_C3HHeJ_T0086581.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132352845 132359236 + MGP_C3HHeJ_P0086581 Tgfb1i1 protein_coding protein_coding MGP_C3HHeJ_T0086582.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132352847 132359275 + MGP_C3HHeJ_P0086582 Tgfb1i1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086583.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132352882 132359582 + MGP_C3HHeJ_P0086583 Tgfb1i1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086584.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132353885 132359582 + Tgfb1i1 protein_coding retained_intron MGP_C3HHeJ_T0086585.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132353885 132359582 + Tgfb1i1 protein_coding retained_intron MGP_C3HHeJ_T0086586.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132353885 132359582 + Tgfb1i1 protein_coding retained_intron MGP_C3HHeJ_T0086587.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132353885 132359582 + Tgfb1i1 protein_coding retained_intron MGP_C3HHeJ_T0086588.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132353885 132359582 + Tgfb1i1 protein_coding retained_intron MGP_C3HHeJ_T0086589.1 MGP_C3HHeJ_G0032775.1 mouse_genomes_project 7 132354043 132359237 + MGP_C3HHeJ_P0086589 Tgfb1i1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082025.1 MGP_C3HHeJ_G0031590.1 mouse_genomes_project 7 25258098 25856898 + MGP_C3HHeJ_P0082025 Cyp2a5 protein_coding protein_coding MGP_C3HHeJ_T0082027.1 MGP_C3HHeJ_G0031590.1 mouse_genomes_project 7 25258157 25854536 + MGP_C3HHeJ_P0082027 Cyp2a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082028.1 MGP_C3HHeJ_G0031590.1 mouse_genomes_project 7 25258996 25854475 + Cyp2a5 protein_coding processed_transcript MGP_C3HHeJ_T0082029.1 MGP_C3HHeJ_G0031590.1 mouse_genomes_project 7 25286139 25288418 + MGP_C3HHeJ_P0082029 Cyp2a5 protein_coding protein_coding MGP_C3HHeJ_T0018182.1 MGP_C3HHeJ_G0015446.1 mouse_genomes_project 7 116140456 116217147 - 2310014F06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0101263.1 MGP_C3HHeJ_G0039376.1 mouse_genomes_project 7 27685729 27690893 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101264.1 MGP_C3HHeJ_G0039376.1 mouse_genomes_project 7 27690120 27690675 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0086728.1 MGP_C3HHeJ_G0032798.1 mouse_genomes_project 7 135608626 135610721 + MGP_C3HHeJ_P0086728 Fam24a protein_coding protein_coding MGP_C3HHeJ_T0082243.1 MGP_C3HHeJ_G0031649.1 mouse_genomes_project 7 27555098 27557568 - MGP_C3HHeJ_P0082243 Zfp36 protein_coding protein_coding MGP_C3HHeJ_T0081011.1 MGP_C3HHeJ_G0031256.1 mouse_genomes_project 7 1601703 1629439 - MGP_C3HHeJ_P0081011 Ppp6r1 protein_coding protein_coding MGP_C3HHeJ_T0081012.1 MGP_C3HHeJ_G0031256.1 mouse_genomes_project 7 1606116 1612805 - Ppp6r1 protein_coding retained_intron MGP_C3HHeJ_T0081013.1 MGP_C3HHeJ_G0031256.1 mouse_genomes_project 7 1613199 1629410 - Ppp6r1 protein_coding retained_intron MGP_C3HHeJ_T0081014.1 MGP_C3HHeJ_G0031256.1 mouse_genomes_project 7 1613937 1615929 - MGP_C3HHeJ_P0081014 Ppp6r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081015.1 MGP_C3HHeJ_G0031256.1 mouse_genomes_project 7 1614778 1620056 - MGP_C3HHeJ_P0081015 Ppp6r1 protein_coding protein_coding MGP_C3HHeJ_T0081016.1 MGP_C3HHeJ_G0031256.1 mouse_genomes_project 7 1615881 1629401 - MGP_C3HHeJ_P0081016 Ppp6r1 protein_coding protein_coding MGP_C3HHeJ_T0083962.1 MGP_C3HHeJ_G0032061.1 mouse_genomes_project 7 69174502 69180426 + MGP_C3HHeJ_P0083962 Lysmd4 protein_coding protein_coding MGP_C3HHeJ_T0083963.1 MGP_C3HHeJ_G0032061.1 mouse_genomes_project 7 69174574 69180426 + MGP_C3HHeJ_P0083963 Lysmd4 protein_coding protein_coding MGP_C3HHeJ_T0015669.1 MGP_C3HHeJ_G0013773.1 mouse_genomes_project 7 98328461 98328827 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086113.1 MGP_C3HHeJ_G0032686.1 mouse_genomes_project 7 130562187 130568105 - MGP_C3HHeJ_P0086113 Il27 protein_coding protein_coding MGP_C3HHeJ_T0085800.1 MGP_C3HHeJ_G0032622.1 mouse_genomes_project 7 123892218 123905243 - MGP_C3HHeJ_P0085800 Zp2 protein_coding protein_coding MGP_C3HHeJ_T0100866.1 MGP_C3HHeJ_G0039060.1 mouse_genomes_project 7 139569803 139569936 - Gm24581 snoRNA snoRNA MGP_C3HHeJ_T0083746.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57445554 57496912 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0083747.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57445879 57538943 + MGP_C3HHeJ_P0083747 Cyfip1 protein_coding protein_coding MGP_C3HHeJ_T0083748.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57445880 57482476 + MGP_C3HHeJ_P0083748 Cyfip1 protein_coding protein_coding MGP_C3HHeJ_T0083749.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57446014 57536840 + MGP_C3HHeJ_P0083749 Cyfip1 protein_coding protein_coding MGP_C3HHeJ_T0083750.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57446058 57532139 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0083751.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57446063 57536813 + MGP_C3HHeJ_P0083751 Cyfip1 protein_coding protein_coding MGP_C3HHeJ_T0083752.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57476380 57530313 + MGP_C3HHeJ_P0083752 Cyfip1 protein_coding protein_coding MGP_C3HHeJ_T0083753.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57502993 57507142 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0083754.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57503322 57536840 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0083755.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57504067 57510579 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0083756.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57514685 57520032 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0083757.1 MGP_C3HHeJ_G0032017.1 mouse_genomes_project 7 57535225 57536813 + Cyfip1 protein_coding retained_intron MGP_C3HHeJ_T0005150.1 MGP_C3HHeJ_G0004373.1 mouse_genomes_project 7 66214164 66222502 - Gm20457 antisense antisense MGP_C3HHeJ_T0015609.1 MGP_C3HHeJ_G0013713.1 mouse_genomes_project 7 49613072 49613709 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081211.1 MGP_C3HHeJ_G0031347.1 mouse_genomes_project 7 10027782 10045763 + MGP_C3HHeJ_P0081211 Zfp606 protein_coding protein_coding MGP_C3HHeJ_T0081212.1 MGP_C3HHeJ_G0031347.1 mouse_genomes_project 7 10027794 10033429 + Zfp606 protein_coding retained_intron MGP_C3HHeJ_T0081213.1 MGP_C3HHeJ_G0031347.1 mouse_genomes_project 7 10027852 10045086 + MGP_C3HHeJ_P0081213 Zfp606 protein_coding protein_coding MGP_C3HHeJ_T0081214.1 MGP_C3HHeJ_G0031347.1 mouse_genomes_project 7 10039040 10045077 + Zfp606 protein_coding retained_intron MGP_C3HHeJ_T0002174.1 MGP_C3HHeJ_G0002095.1 mouse_genomes_project 7 36972626 36974168 + TEC TEC MGP_C3HHeJ_T0084229.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725409 82749401 + MGP_C3HHeJ_P0084229 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084230.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725410 82749401 + MGP_C3HHeJ_P0084230 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084231.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725424 82745888 + Prc1 protein_coding retained_intron MGP_C3HHeJ_T0084232.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725432 82748726 + MGP_C3HHeJ_P0084232 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084233.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725433 82736070 + Prc1 protein_coding retained_intron MGP_C3HHeJ_T0084234.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725438 82749393 + MGP_C3HHeJ_P0084234 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084235.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725464 82749396 + MGP_C3HHeJ_P0084235 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084236.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725472 82736260 + Prc1 protein_coding retained_intron MGP_C3HHeJ_T0084237.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82725540 82749396 + MGP_C3HHeJ_P0084237 Prc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084238.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82736033 82737596 + Prc1 protein_coding retained_intron MGP_C3HHeJ_T0084239.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82736367 82742539 + MGP_C3HHeJ_P0084239 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084240.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82741043 82749399 + MGP_C3HHeJ_P0084240 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084241.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82742503 82746636 + MGP_C3HHeJ_P0084241 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084242.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82742759 82748659 + MGP_C3HHeJ_P0084242 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0084243.1 MGP_C3HHeJ_G0032114.1 mouse_genomes_project 7 82745449 82746839 + MGP_C3HHeJ_P0084243 Prc1 protein_coding protein_coding MGP_C3HHeJ_T0008825.1 MGP_C3HHeJ_G0007119.1 mouse_genomes_project 7 74832210 74832550 - Gm28744 lincRNA lincRNA MGP_C3HHeJ_T0015619.1 MGP_C3HHeJ_G0013723.1 mouse_genomes_project 7 58386691 58387550 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002237.1 MGP_C3HHeJ_G0002157.1 mouse_genomes_project 7 81886030 81887068 + TEC TEC MGP_C3HHeJ_T0085113.1 MGP_C3HHeJ_G0032379.1 mouse_genomes_project 7 107130653 107132188 - MGP_C3HHeJ_P0085113 Hbb-bh1 protein_coding protein_coding MGP_C3HHeJ_T0102147.1 MGP_C3HHeJ_G0040111.1 mouse_genomes_project 7 7538412 7539319 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085156.1 MGP_C3HHeJ_G0032408.1 mouse_genomes_project 7 107553359 107569699 - MGP_C3HHeJ_P0085156 protein_coding protein_coding MGP_C3HHeJ_T0085160.1 MGP_C3HHeJ_G0032408.1 mouse_genomes_project 7 107559479 107569686 - MGP_C3HHeJ_P0085160 protein_coding protein_coding MGP_C3HHeJ_T0008960.1 MGP_C3HHeJ_G0007204.1 mouse_genomes_project 7 134154701 134172267 + Gm4265 lincRNA lincRNA MGP_C3HHeJ_T0002181.1 MGP_C3HHeJ_G0002102.1 mouse_genomes_project 7 40565566 40568716 - TEC TEC MGP_C3HHeJ_T0083314.1 MGP_C3HHeJ_G0031895.1 mouse_genomes_project 7 46051902 46069736 - MGP_C3HHeJ_P0083314 Cpt1c protein_coding protein_coding MGP_C3HHeJ_T0015638.1 MGP_C3HHeJ_G0013742.1 mouse_genomes_project 7 75875989 75878026 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083377.1 MGP_C3HHeJ_G0031919.1 mouse_genomes_project 7 46378563 46390045 + MGP_C3HHeJ_P0083377 protein_coding protein_coding MGP_C3HHeJ_T0083378.1 MGP_C3HHeJ_G0031919.1 mouse_genomes_project 7 46383539 46386314 + protein_coding processed_transcript MGP_C3HHeJ_T0083379.1 MGP_C3HHeJ_G0031919.1 mouse_genomes_project 7 46383790 46387709 + protein_coding retained_intron MGP_C3HHeJ_T0083380.1 MGP_C3HHeJ_G0031919.1 mouse_genomes_project 7 46383826 46389632 + MGP_C3HHeJ_P0083380 protein_coding protein_coding MGP_C3HHeJ_T0083381.1 MGP_C3HHeJ_G0031919.1 mouse_genomes_project 7 46383923 46390044 + MGP_C3HHeJ_P0083381 protein_coding protein_coding MGP_C3HHeJ_T0083382.1 MGP_C3HHeJ_G0031919.1 mouse_genomes_project 7 46388186 46390049 + protein_coding retained_intron MGP_C3HHeJ_T0015567.1 MGP_C3HHeJ_G0013671.1 mouse_genomes_project 7 33555366 33555501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018113.1 MGP_C3HHeJ_G0015421.1 mouse_genomes_project 7 28883680 28887745 - A330087D11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018129.1 MGP_C3HHeJ_G0015428.1 mouse_genomes_project 7 46471734 46473520 + Mtag2 processed_transcript processed_transcript MGP_C3HHeJ_T0018130.1 MGP_C3HHeJ_G0015428.1 mouse_genomes_project 7 46472804 46473520 + Mtag2 processed_transcript pseudogene MGP_C3HHeJ_T0086862.1 MGP_C3HHeJ_G0032828.1 mouse_genomes_project 7 139711553 139715857 + MGP_C3HHeJ_P0086862 Nps protein_coding protein_coding MGP_C3HHeJ_T0081077.1 MGP_C3HHeJ_G0031272.1 mouse_genomes_project 7 1934739 1937461 + MGP_C3HHeJ_P0081077 Nat14 protein_coding protein_coding MGP_C3HHeJ_T0083107.1 MGP_C3HHeJ_G0031847.1 mouse_genomes_project 7 44800659 44805035 + MGP_C3HHeJ_P0083107 Klk10 protein_coding protein_coding MGP_C3HHeJ_T0084205.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82654109 82659505 - MGP_C3HHeJ_P0084205 Cib1 protein_coding protein_coding MGP_C3HHeJ_T0084206.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82654117 82659569 - MGP_C3HHeJ_P0084206 Cib1 protein_coding protein_coding MGP_C3HHeJ_T0084207.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82654117 82659510 - MGP_C3HHeJ_P0084207 Cib1 protein_coding protein_coding MGP_C3HHeJ_T0084208.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82654790 82657299 - Cib1 protein_coding retained_intron MGP_C3HHeJ_T0084209.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82655111 82659542 - Cib1 protein_coding retained_intron MGP_C3HHeJ_T0084210.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82655351 82659750 - MGP_C3HHeJ_P0084210 Cib1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084211.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82658390 82659676 - Cib1 protein_coding retained_intron MGP_C3HHeJ_T0084212.1 MGP_C3HHeJ_G0032108.1 mouse_genomes_project 7 82658510 82659526 - Cib1 protein_coding retained_intron MGP_C3HHeJ_T0102293.1 MGP_C3HHeJ_G0040256.1 mouse_genomes_project 7 89155623 89156549 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015578.1 MGP_C3HHeJ_G0013682.1 mouse_genomes_project 7 36451015 36451990 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083112.1 MGP_C3HHeJ_G0031850.1 mouse_genomes_project 7 44833208 44839959 + MGP_C3HHeJ_P0083112 Klk7 protein_coding protein_coding MGP_C3HHeJ_T0087260.1 MGP_C3HHeJ_G0032936.1 mouse_genomes_project 7 146329633 146351975 - MGP_C3HHeJ_P0087260 protein_coding protein_coding MGP_C3HHeJ_T0087261.1 MGP_C3HHeJ_G0032936.1 mouse_genomes_project 7 146330186 146351975 - MGP_C3HHeJ_P0087261 protein_coding protein_coding MGP_C3HHeJ_T0087262.1 MGP_C3HHeJ_G0032936.1 mouse_genomes_project 7 146330191 146352048 - MGP_C3HHeJ_P0087262 protein_coding protein_coding MGP_C3HHeJ_T0015521.1 MGP_C3HHeJ_G0013625.1 mouse_genomes_project 7 14601565 14601680 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087002.1 MGP_C3HHeJ_G0032870.1 mouse_genomes_project 7 144924255 144925305 + MGP_C3HHeJ_P0087002 Olfr525 protein_coding protein_coding MGP_C3HHeJ_T0084048.1 MGP_C3HHeJ_G0032078.1 mouse_genomes_project 7 77675165 77974019 + MGP_C3HHeJ_P0084048 Akap13 protein_coding protein_coding MGP_C3HHeJ_T0084049.1 MGP_C3HHeJ_G0032078.1 mouse_genomes_project 7 77754416 77974024 + MGP_C3HHeJ_P0084049 Akap13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081095.1 MGP_C3HHeJ_G0031279.1 mouse_genomes_project 7 2037122 2049937 + MGP_C3HHeJ_P0081095 Zfp865 protein_coding protein_coding MGP_C3HHeJ_T0081954.1 MGP_C3HHeJ_G0031572.1 mouse_genomes_project 7 24300233 24363738 - MGP_C3HHeJ_P0081954 Ceacam1 protein_coding protein_coding MGP_C3HHeJ_T0081955.1 MGP_C3HHeJ_G0031572.1 mouse_genomes_project 7 24300233 24363738 - MGP_C3HHeJ_P0081955 Ceacam1 protein_coding protein_coding MGP_C3HHeJ_T0081956.1 MGP_C3HHeJ_G0031572.1 mouse_genomes_project 7 24319075 24363730 - MGP_C3HHeJ_P0081956 Ceacam1 protein_coding protein_coding MGP_C3HHeJ_T0081957.1 MGP_C3HHeJ_G0031572.1 mouse_genomes_project 7 24338176 24348936 - Ceacam1 protein_coding retained_intron MGP_C3HHeJ_T0011596.1 MGP_C3HHeJ_G0009729.1 mouse_genomes_project 7 93841370 93841578 - Gm27660 misc_RNA misc_RNA MGP_C3HHeJ_T0018196.1 MGP_C3HHeJ_G0015454.1 mouse_genomes_project 7 132295767 132306589 - 4931431B13Rik processed_transcript antisense MGP_C3HHeJ_T0018197.1 MGP_C3HHeJ_G0015454.1 mouse_genomes_project 7 132305338 132306585 - 4931431B13Rik processed_transcript retained_intron MGP_C3HHeJ_T0085962.1 MGP_C3HHeJ_G0032660.1 mouse_genomes_project 7 127270087 127302446 + MGP_C3HHeJ_P0085962 Lcmt1 protein_coding protein_coding MGP_C3HHeJ_T0085963.1 MGP_C3HHeJ_G0032660.1 mouse_genomes_project 7 127278273 127331083 + MGP_C3HHeJ_P0085963 Lcmt1 protein_coding protein_coding MGP_C3HHeJ_T0085964.1 MGP_C3HHeJ_G0032660.1 mouse_genomes_project 7 127278347 127331074 + MGP_C3HHeJ_P0085964 Lcmt1 protein_coding protein_coding MGP_C3HHeJ_T0085965.1 MGP_C3HHeJ_G0032660.1 mouse_genomes_project 7 127309148 127323481 + Lcmt1 protein_coding processed_transcript MGP_C3HHeJ_T0085966.1 MGP_C3HHeJ_G0032660.1 mouse_genomes_project 7 127318867 127331069 + Lcmt1 protein_coding retained_intron MGP_C3HHeJ_T0085967.1 MGP_C3HHeJ_G0032660.1 mouse_genomes_project 7 127328584 127331073 + Lcmt1 protein_coding retained_intron MGP_C3HHeJ_T0010751.1 MGP_C3HHeJ_G0008884.1 mouse_genomes_project 7 17445065 17445130 + Mir3100 miRNA miRNA MGP_C3HHeJ_T0081100.1 MGP_C3HHeJ_G0031284.1 mouse_genomes_project 7 2072948 2077286 + MGP_C3HHeJ_P0081100 protein_coding protein_coding MGP_C3HHeJ_T0083712.1 MGP_C3HHeJ_G0032009.1 mouse_genomes_project 7 53174899 53225580 + MGP_C3HHeJ_P0083712 Slc17a6 protein_coding protein_coding MGP_C3HHeJ_T0102232.1 MGP_C3HHeJ_G0040195.1 mouse_genomes_project 7 45006771 45044430 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008756.1 MGP_C3HHeJ_G0007067.1 mouse_genomes_project 7 36036633 36037944 + Gm28514 lincRNA lincRNA MGP_C3HHeJ_T0084588.1 MGP_C3HHeJ_G0032213.1 mouse_genomes_project 7 95404526 95432006 - MGP_C3HHeJ_P0084588 Pcf11 protein_coding protein_coding MGP_C3HHeJ_T0084589.1 MGP_C3HHeJ_G0032213.1 mouse_genomes_project 7 95405073 95425616 - MGP_C3HHeJ_P0084589 Pcf11 protein_coding protein_coding MGP_C3HHeJ_T0084590.1 MGP_C3HHeJ_G0032213.1 mouse_genomes_project 7 95407630 95409013 - Pcf11 protein_coding retained_intron MGP_C3HHeJ_T0085062.1 MGP_C3HHeJ_G0032332.1 mouse_genomes_project 7 106122564 106123609 + MGP_C3HHeJ_P0085062 Olfr570 protein_coding protein_coding MGP_C3HHeJ_T0010738.1 MGP_C3HHeJ_G0008871.1 mouse_genomes_project 7 113272 113334 - Mir292b miRNA miRNA MGP_C3HHeJ_T0083876.1 MGP_C3HHeJ_G0032044.1 mouse_genomes_project 7 66631613 67040646 - MGP_C3HHeJ_P0083876 Fam189a1 protein_coding protein_coding MGP_C3HHeJ_T0083877.1 MGP_C3HHeJ_G0032044.1 mouse_genomes_project 7 66631635 66649167 - Fam189a1 protein_coding processed_transcript MGP_C3HHeJ_T0083878.1 MGP_C3HHeJ_G0032044.1 mouse_genomes_project 7 66643244 66802304 - MGP_C3HHeJ_P0083878 Fam189a1 protein_coding protein_coding MGP_C3HHeJ_T0083879.1 MGP_C3HHeJ_G0032044.1 mouse_genomes_project 7 66662204 67040492 - MGP_C3HHeJ_P0083879 Fam189a1 protein_coding protein_coding MGP_C3HHeJ_T0083880.1 MGP_C3HHeJ_G0032044.1 mouse_genomes_project 7 66697474 66731541 - Fam189a1 protein_coding retained_intron MGP_C3HHeJ_T0082539.1 MGP_C3HHeJ_G0031719.1 mouse_genomes_project 7 29740092 29747347 - MGP_C3HHeJ_P0082539 Lrfn3 protein_coding protein_coding MGP_C3HHeJ_T0084464.1 MGP_C3HHeJ_G0032161.1 mouse_genomes_project 7 86698714 86742002 - MGP_C3HHeJ_P0084464 Abhd17c protein_coding protein_coding MGP_C3HHeJ_T0084465.1 MGP_C3HHeJ_G0032161.1 mouse_genomes_project 7 86703594 86737923 - Abhd17c protein_coding processed_transcript MGP_C3HHeJ_T0082469.1 MGP_C3HHeJ_G0031704.1 mouse_genomes_project 7 29495349 29508091 + MGP_C3HHeJ_P0082469 Zfp382 protein_coding protein_coding MGP_C3HHeJ_T0082470.1 MGP_C3HHeJ_G0031704.1 mouse_genomes_project 7 29495377 29504242 + MGP_C3HHeJ_P0082470 Zfp382 protein_coding protein_coding MGP_C3HHeJ_T0082471.1 MGP_C3HHeJ_G0031704.1 mouse_genomes_project 7 29498334 29506971 + Zfp382 protein_coding retained_intron MGP_C3HHeJ_T0102177.1 MGP_C3HHeJ_G0040141.1 mouse_genomes_project 7 12298795 12299237 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081985.1 MGP_C3HHeJ_G0031580.1 mouse_genomes_project 7 24570579 24577743 + MGP_C3HHeJ_P0081985 B9d2 protein_coding protein_coding MGP_C3HHeJ_T0081986.1 MGP_C3HHeJ_G0031580.1 mouse_genomes_project 7 24570637 24573450 + MGP_C3HHeJ_P0081986 B9d2 protein_coding protein_coding MGP_C3HHeJ_T0081987.1 MGP_C3HHeJ_G0031580.1 mouse_genomes_project 7 24570655 24573221 + MGP_C3HHeJ_P0081987 B9d2 protein_coding protein_coding MGP_C3HHeJ_T0081988.1 MGP_C3HHeJ_G0031580.1 mouse_genomes_project 7 24570957 24577743 + MGP_C3HHeJ_P0081988 B9d2 protein_coding protein_coding MGP_C3HHeJ_T0085041.1 MGP_C3HHeJ_G0032313.1 mouse_genomes_project 7 105755736 105756681 + MGP_C3HHeJ_P0085041 Olfr547 protein_coding protein_coding MGP_C3HHeJ_T0085168.1 MGP_C3HHeJ_G0032411.1 mouse_genomes_project 7 107598738 107608750 - MGP_C3HHeJ_P0085168 Trim30c protein_coding protein_coding MGP_C3HHeJ_T0086063.1 MGP_C3HHeJ_G0032678.1 mouse_genomes_project 7 130411124 130428377 - MGP_C3HHeJ_P0086063 Atp2a1 protein_coding protein_coding MGP_C3HHeJ_T0086064.1 MGP_C3HHeJ_G0032678.1 mouse_genomes_project 7 130411126 130412912 - MGP_C3HHeJ_P0086064 Atp2a1 protein_coding protein_coding MGP_C3HHeJ_T0086065.1 MGP_C3HHeJ_G0032678.1 mouse_genomes_project 7 130411367 130429076 - MGP_C3HHeJ_P0086065 Atp2a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085124.1 MGP_C3HHeJ_G0032390.1 mouse_genomes_project 7 107304956 107305907 - MGP_C3HHeJ_P0085124 Olfr639 protein_coding protein_coding MGP_C3HHeJ_T0083097.1 MGP_C3HHeJ_G0031844.1 mouse_genomes_project 7 44728623 44743590 + MGP_C3HHeJ_P0083097 Klk13 protein_coding protein_coding MGP_C3HHeJ_T0083098.1 MGP_C3HHeJ_G0031844.1 mouse_genomes_project 7 44729455 44737367 + MGP_C3HHeJ_P0083098 Klk13 protein_coding protein_coding MGP_C3HHeJ_T0083099.1 MGP_C3HHeJ_G0031844.1 mouse_genomes_project 7 44731015 44739923 + MGP_C3HHeJ_P0083099 Klk13 protein_coding protein_coding MGP_C3HHeJ_T0015549.1 MGP_C3HHeJ_G0013653.1 mouse_genomes_project 7 25041162 25041916 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084728.1 MGP_C3HHeJ_G0032242.1 mouse_genomes_project 7 101646126 101661075 + MGP_C3HHeJ_P0084728 Prkrir protein_coding protein_coding MGP_C3HHeJ_T0084729.1 MGP_C3HHeJ_G0032242.1 mouse_genomes_project 7 101646126 101658374 + MGP_C3HHeJ_P0084729 Prkrir protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084730.1 MGP_C3HHeJ_G0032242.1 mouse_genomes_project 7 101646351 101658120 + MGP_C3HHeJ_P0084730 Prkrir protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084731.1 MGP_C3HHeJ_G0032242.1 mouse_genomes_project 7 101652882 101658264 + Prkrir protein_coding processed_transcript MGP_C3HHeJ_T0015679.1 MGP_C3HHeJ_G0013783.1 mouse_genomes_project 7 101396922 101397386 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010812.1 MGP_C3HHeJ_G0008945.1 mouse_genomes_project 7 81237765 81237862 + Mir7-2 miRNA miRNA MGP_C3HHeJ_T0002183.1 MGP_C3HHeJ_G0002104.1 mouse_genomes_project 7 44023248 44023373 + TEC TEC MGP_C3HHeJ_T0087132.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145941693 145945409 - MGP_C3HHeJ_P0087132 Irf7 protein_coding protein_coding MGP_C3HHeJ_T0087133.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145942170 145945469 - MGP_C3HHeJ_P0087133 Irf7 protein_coding protein_coding MGP_C3HHeJ_T0087134.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145942171 145945411 - MGP_C3HHeJ_P0087134 Irf7 protein_coding protein_coding MGP_C3HHeJ_T0087135.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145942174 145945410 - Irf7 protein_coding retained_intron MGP_C3HHeJ_T0087136.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145942419 145944280 - MGP_C3HHeJ_P0087136 Irf7 protein_coding protein_coding MGP_C3HHeJ_T0087137.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145942778 145944119 - Irf7 protein_coding retained_intron MGP_C3HHeJ_T0087138.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145942960 145945032 - Irf7 protein_coding processed_transcript MGP_C3HHeJ_T0087139.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145943210 145944461 - Irf7 protein_coding retained_intron MGP_C3HHeJ_T0087140.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145943787 145944695 - Irf7 protein_coding retained_intron MGP_C3HHeJ_T0087141.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145944202 145944972 - Irf7 protein_coding retained_intron MGP_C3HHeJ_T0087142.1 MGP_C3HHeJ_G0032916.1 mouse_genomes_project 7 145944363 145945409 - Irf7 protein_coding processed_transcript MGP_C3HHeJ_T0102152.1 MGP_C3HHeJ_G0040116.1 mouse_genomes_project 7 7861592 7861966 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005132.1 MGP_C3HHeJ_G0004362.1 mouse_genomes_project 7 38482215 38482431 - D530033B14Rik antisense antisense MGP_C3HHeJ_T0005133.1 MGP_C3HHeJ_G0004362.1 mouse_genomes_project 7 38482411 38495895 - D530033B14Rik antisense antisense MGP_C3HHeJ_T0008748.1 MGP_C3HHeJ_G0007060.1 mouse_genomes_project 7 34658114 34669797 + Gm12784 lincRNA lincRNA MGP_C3HHeJ_T0008749.1 MGP_C3HHeJ_G0007060.1 mouse_genomes_project 7 34660848 34699306 + Gm12784 lincRNA lincRNA MGP_C3HHeJ_T0015599.1 MGP_C3HHeJ_G0013703.1 mouse_genomes_project 7 44377410 44377675 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083330.1 MGP_C3HHeJ_G0031904.1 mouse_genomes_project 7 46159680 46175763 + MGP_C3HHeJ_P0083330 Nosip protein_coding protein_coding MGP_C3HHeJ_T0083331.1 MGP_C3HHeJ_G0031904.1 mouse_genomes_project 7 46159680 46175763 + MGP_C3HHeJ_P0083331 Nosip protein_coding protein_coding MGP_C3HHeJ_T0086559.1 MGP_C3HHeJ_G0032768.1 mouse_genomes_project 7 132153467 132215646 + MGP_C3HHeJ_P0086559 protein_coding protein_coding MGP_C3HHeJ_T0086560.1 MGP_C3HHeJ_G0032768.1 mouse_genomes_project 7 132153496 132215645 + MGP_C3HHeJ_P0086560 protein_coding protein_coding MGP_C3HHeJ_T0086561.1 MGP_C3HHeJ_G0032768.1 mouse_genomes_project 7 132153506 132214245 + MGP_C3HHeJ_P0086561 protein_coding protein_coding MGP_C3HHeJ_T0086563.1 MGP_C3HHeJ_G0032768.1 mouse_genomes_project 7 132153510 132214686 + MGP_C3HHeJ_P0086563 protein_coding protein_coding MGP_C3HHeJ_T0086564.1 MGP_C3HHeJ_G0032768.1 mouse_genomes_project 7 132153555 132171057 + protein_coding processed_transcript MGP_C3HHeJ_T0086565.1 MGP_C3HHeJ_G0032768.1 mouse_genomes_project 7 132153570 132171299 + MGP_C3HHeJ_P0086565 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083243.1 MGP_C3HHeJ_G0031880.1 mouse_genomes_project 7 45664492 45726249 - MGP_C3HHeJ_P0083243 protein_coding protein_coding MGP_C3HHeJ_T0008759.1 MGP_C3HHeJ_G0007070.1 mouse_genomes_project 7 37373973 37382570 - Gm28078 lincRNA lincRNA MGP_C3HHeJ_T0084767.1 MGP_C3HHeJ_G0032253.1 mouse_genomes_project 7 102615289 102618306 - MGP_C3HHeJ_P0084767 Tpbgl protein_coding protein_coding MGP_C3HHeJ_T0084876.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104408691 104422754 - MGP_C3HHeJ_P0084876 Atg16l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084877.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104408914 104422815 - MGP_C3HHeJ_P0084877 Atg16l2 protein_coding protein_coding MGP_C3HHeJ_T0084878.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104408916 104409759 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084879.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104408916 104422798 - MGP_C3HHeJ_P0084879 Atg16l2 protein_coding protein_coding MGP_C3HHeJ_T0084880.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104408925 104422978 - MGP_C3HHeJ_P0084880 Atg16l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084881.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104409127 104409876 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084882.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104409146 104422754 - MGP_C3HHeJ_P0084882 Atg16l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084883.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104409943 104411597 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084884.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104410450 104411600 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084885.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104411028 104411842 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084886.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104411457 104417464 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084887.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104411856 104417477 - MGP_C3HHeJ_P0084887 Atg16l2 protein_coding protein_coding MGP_C3HHeJ_T0084888.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104412855 104417406 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084889.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104416921 104417864 - Atg16l2 protein_coding retained_intron MGP_C3HHeJ_T0084890.1 MGP_C3HHeJ_G0032282.1 mouse_genomes_project 7 104417589 104422798 - MGP_C3HHeJ_P0084890 Atg16l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082058.1 MGP_C3HHeJ_G0031603.1 mouse_genomes_project 7 26217566 26225710 - MGP_C3HHeJ_P0082058 Egln2 protein_coding protein_coding MGP_C3HHeJ_T0082059.1 MGP_C3HHeJ_G0031603.1 mouse_genomes_project 7 26217567 26219779 - Egln2 protein_coding processed_transcript MGP_C3HHeJ_T0082060.1 MGP_C3HHeJ_G0031603.1 mouse_genomes_project 7 26217896 26225321 - MGP_C3HHeJ_P0082060 Egln2 protein_coding protein_coding MGP_C3HHeJ_T0082061.1 MGP_C3HHeJ_G0031603.1 mouse_genomes_project 7 26224440 26225190 - Egln2 protein_coding processed_transcript MGP_C3HHeJ_T0015502.1 MGP_C3HHeJ_G0013606.1 mouse_genomes_project 7 3471830 3472040 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082121.1 MGP_C3HHeJ_G0031615.1 mouse_genomes_project 7 26425927 26431979 - MGP_C3HHeJ_P0082121 Gm20479 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085968.1 MGP_C3HHeJ_G0032661.1 mouse_genomes_project 7 127365072 127370786 + MGP_C3HHeJ_P0085968 Aqp8 protein_coding protein_coding MGP_C3HHeJ_T0085969.1 MGP_C3HHeJ_G0032661.1 mouse_genomes_project 7 127365093 127370768 + MGP_C3HHeJ_P0085969 Aqp8 protein_coding protein_coding MGP_C3HHeJ_T0085970.1 MGP_C3HHeJ_G0032661.1 mouse_genomes_project 7 127366532 127370780 + Aqp8 protein_coding processed_transcript MGP_C3HHeJ_T0081201.1 MGP_C3HHeJ_G0031340.1 mouse_genomes_project 7 9693243 9694185 + MGP_C3HHeJ_P0081201 Vmn1r78 protein_coding protein_coding MGP_C3HHeJ_T0008919.1 MGP_C3HHeJ_G0007177.1 mouse_genomes_project 7 120878869 120929847 + Gm45152 lincRNA lincRNA MGP_C3HHeJ_T0087011.1 MGP_C3HHeJ_G0032879.1 mouse_genomes_project 7 145147669 145149835 + MGP_C3HHeJ_P0087011 Olfr538 protein_coding protein_coding MGP_C3HHeJ_T0102195.1 MGP_C3HHeJ_G0040159.1 mouse_genomes_project 7 14996755 14997116 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081198.1 MGP_C3HHeJ_G0031337.1 mouse_genomes_project 7 9332407 9333322 + MGP_C3HHeJ_P0081198 Vmn1r74 protein_coding protein_coding MGP_C3HHeJ_T0085067.1 MGP_C3HHeJ_G0032337.1 mouse_genomes_project 7 106189909 106190848 + MGP_C3HHeJ_P0085067 Olfr576 protein_coding protein_coding MGP_C3HHeJ_T0085068.1 MGP_C3HHeJ_G0032337.1 mouse_genomes_project 7 106189909 106199969 + MGP_C3HHeJ_P0085068 Olfr576 protein_coding protein_coding MGP_C3HHeJ_T0084613.1 MGP_C3HHeJ_G0032219.1 mouse_genomes_project 7 99977999 100192656 + MGP_C3HHeJ_P0084613 Gab2 protein_coding protein_coding MGP_C3HHeJ_T0084614.1 MGP_C3HHeJ_G0032219.1 mouse_genomes_project 7 99978185 100188736 + MGP_C3HHeJ_P0084614 Gab2 protein_coding protein_coding MGP_C3HHeJ_T0008980.1 MGP_C3HHeJ_G0007215.1 mouse_genomes_project 7 149775835 149778737 - Gm26793 lincRNA lincRNA MGP_C3HHeJ_T0081517.1 MGP_C3HHeJ_G0031449.1 mouse_genomes_project 7 17200016 17220151 + Pglyrp1 protein_coding processed_transcript MGP_C3HHeJ_T0081518.1 MGP_C3HHeJ_G0031449.1 mouse_genomes_project 7 17212906 17220133 + MGP_C3HHeJ_P0081518 Pglyrp1 protein_coding protein_coding MGP_C3HHeJ_T0081519.1 MGP_C3HHeJ_G0031449.1 mouse_genomes_project 7 17212919 17213876 + Pglyrp1 protein_coding retained_intron MGP_C3HHeJ_T0081641.1 MGP_C3HHeJ_G0031481.1 mouse_genomes_project 7 17803831 17839347 - MGP_C3HHeJ_P0081641 Mark4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081642.1 MGP_C3HHeJ_G0031481.1 mouse_genomes_project 7 17804773 17839347 - MGP_C3HHeJ_P0081642 Mark4 protein_coding protein_coding MGP_C3HHeJ_T0081064.1 MGP_C3HHeJ_G0031267.1 mouse_genomes_project 7 1778290 1797757 - MGP_C3HHeJ_P0081064 Ube2s protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081065.1 MGP_C3HHeJ_G0031267.1 mouse_genomes_project 7 1791316 1796525 - Ube2s protein_coding retained_intron MGP_C3HHeJ_T0081066.1 MGP_C3HHeJ_G0031267.1 mouse_genomes_project 7 1792305 1797996 - MGP_C3HHeJ_P0081066 Ube2s protein_coding protein_coding MGP_C3HHeJ_T0081067.1 MGP_C3HHeJ_G0031267.1 mouse_genomes_project 7 1792713 1797530 - MGP_C3HHeJ_P0081067 Ube2s protein_coding protein_coding MGP_C3HHeJ_T0081068.1 MGP_C3HHeJ_G0031267.1 mouse_genomes_project 7 1795850 1797312 - MGP_C3HHeJ_P0081068 Ube2s protein_coding protein_coding MGP_C3HHeJ_T0083663.1 MGP_C3HHeJ_G0031998.1 mouse_genomes_project 7 50216707 50232194 + Zdhhc13 protein_coding processed_transcript MGP_C3HHeJ_T0083664.1 MGP_C3HHeJ_G0031998.1 mouse_genomes_project 7 50216786 50256581 + MGP_C3HHeJ_P0083664 Zdhhc13 protein_coding protein_coding MGP_C3HHeJ_T0087274.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146642790 146698027 + MGP_C3HHeJ_P0087274 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087275.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146642790 146692786 + MGP_C3HHeJ_P0087275 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087276.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146642885 146692953 + MGP_C3HHeJ_P0087276 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087277.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146643360 146696710 + MGP_C3HHeJ_P0087277 Brsk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087278.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146643436 146694731 + MGP_C3HHeJ_P0087278 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087279.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146643439 146696013 + MGP_C3HHeJ_P0087279 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087280.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146643439 146698028 + MGP_C3HHeJ_P0087280 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087281.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146675317 146695928 + MGP_C3HHeJ_P0087281 Brsk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087282.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146678629 146695928 + MGP_C3HHeJ_P0087282 Brsk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087283.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146678669 146696952 + MGP_C3HHeJ_P0087283 Brsk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087284.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146679490 146695928 + MGP_C3HHeJ_P0087284 Brsk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087285.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146686934 146695931 + MGP_C3HHeJ_P0087285 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087286.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146686990 146696257 + MGP_C3HHeJ_P0087286 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0087287.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146691250 146697848 + Brsk2 protein_coding processed_transcript MGP_C3HHeJ_T0087288.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146691278 146696456 + Brsk2 protein_coding processed_transcript MGP_C3HHeJ_T0087289.1 MGP_C3HHeJ_G0032940.1 mouse_genomes_project 7 146692441 146695222 + MGP_C3HHeJ_P0087289 Brsk2 protein_coding protein_coding MGP_C3HHeJ_T0082420.1 MGP_C3HHeJ_G0031689.1 mouse_genomes_project 7 29113939 29125212 + MGP_C3HHeJ_P0082420 Zfp84 protein_coding protein_coding MGP_C3HHeJ_T0100812.1 MGP_C3HHeJ_G0039006.1 mouse_genomes_project 7 27528502 27528627 + AF357399 snoRNA snoRNA MGP_C3HHeJ_T0015634.1 MGP_C3HHeJ_G0013738.1 mouse_genomes_project 7 72575831 72576841 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084477.1 MGP_C3HHeJ_G0032169.1 mouse_genomes_project 7 88813020 88834202 - MGP_C3HHeJ_P0084477 Vmn2r76 protein_coding protein_coding MGP_C3HHeJ_T0102160.1 MGP_C3HHeJ_G0040124.1 mouse_genomes_project 7 9488142 9488982 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015624.1 MGP_C3HHeJ_G0013728.1 mouse_genomes_project 7 60472937 60474083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082289.1 MGP_C3HHeJ_G0031661.1 mouse_genomes_project 7 27956837 27969202 + MGP_C3HHeJ_P0082289 Sars2 protein_coding protein_coding MGP_C3HHeJ_T0100846.1 MGP_C3HHeJ_G0039040.1 mouse_genomes_project 7 102455246 102455394 - Snord15a snoRNA snoRNA MGP_C3HHeJ_T0008758.1 MGP_C3HHeJ_G0007069.1 mouse_genomes_project 7 36798187 36801930 + Gm29129 lincRNA lincRNA MGP_C3HHeJ_T0085093.1 MGP_C3HHeJ_G0032361.1 mouse_genomes_project 7 106799574 106804116 + MGP_C3HHeJ_P0085093 Olfr613 protein_coding protein_coding MGP_C3HHeJ_T0002231.1 MGP_C3HHeJ_G0002151.1 mouse_genomes_project 7 80537086 80538552 - TEC TEC MGP_C3HHeJ_T0100816.1 MGP_C3HHeJ_G0039010.1 mouse_genomes_project 7 45280832 45280922 + Snord88c snoRNA snoRNA MGP_C3HHeJ_T0098179.1 MGP_C3HHeJ_G0036391.1 mouse_genomes_project 7 92986389 92986502 + n-R5s155 rRNA rRNA MGP_C3HHeJ_T0002164.1 MGP_C3HHeJ_G0002085.1 mouse_genomes_project 7 30660391 30661149 + TEC TEC MGP_C3HHeJ_T0082181.1 MGP_C3HHeJ_G0031628.1 mouse_genomes_project 7 26834199 26856606 + MGP_C3HHeJ_P0082181 Zfp60 protein_coding protein_coding MGP_C3HHeJ_T0082182.1 MGP_C3HHeJ_G0031628.1 mouse_genomes_project 7 26834221 26845242 + Zfp60 protein_coding retained_intron MGP_C3HHeJ_T0082183.1 MGP_C3HHeJ_G0031628.1 mouse_genomes_project 7 26834243 26854609 + MGP_C3HHeJ_P0082183 Zfp60 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082184.1 MGP_C3HHeJ_G0031628.1 mouse_genomes_project 7 26834253 26851463 + MGP_C3HHeJ_P0082184 Zfp60 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082185.1 MGP_C3HHeJ_G0031628.1 mouse_genomes_project 7 26834321 26853378 + MGP_C3HHeJ_P0082185 Zfp60 protein_coding protein_coding MGP_C3HHeJ_T0082186.1 MGP_C3HHeJ_G0031628.1 mouse_genomes_project 7 26841216 26852940 + MGP_C3HHeJ_P0082186 Zfp60 protein_coding protein_coding MGP_C3HHeJ_T0085795.1 MGP_C3HHeJ_G0032620.1 mouse_genomes_project 7 123674580 123851095 - MGP_C3HHeJ_P0085795 Dnah3 protein_coding protein_coding MGP_C3HHeJ_T0085796.1 MGP_C3HHeJ_G0032620.1 mouse_genomes_project 7 123674580 123851095 - MGP_C3HHeJ_P0085796 Dnah3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0008750.1 MGP_C3HHeJ_G0007061.1 mouse_genomes_project 7 34762941 34763658 - Gm44837 lincRNA lincRNA MGP_C3HHeJ_T0015722.1 MGP_C3HHeJ_G0013826.1 mouse_genomes_project 7 132106116 132106895 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085361.1 MGP_C3HHeJ_G0032502.1 mouse_genomes_project 7 111356874 111357807 + MGP_C3HHeJ_P0085361 Olfr477 protein_coding protein_coding MGP_C3HHeJ_T0085391.1 MGP_C3HHeJ_G0032532.1 mouse_genomes_project 7 112300499 112301604 - MGP_C3HHeJ_P0085391 protein_coding protein_coding MGP_C3HHeJ_T0087497.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149344619 149425961 - MGP_C3HHeJ_P0087497 Ppfia1 protein_coding protein_coding MGP_C3HHeJ_T0087498.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149344620 149358525 - Ppfia1 protein_coding retained_intron MGP_C3HHeJ_T0087499.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149344620 149424764 - MGP_C3HHeJ_P0087499 Ppfia1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087500.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149344627 149382453 - MGP_C3HHeJ_P0087500 Ppfia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087501.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149351589 149355954 - Ppfia1 protein_coding processed_transcript MGP_C3HHeJ_T0087502.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149368030 149370066 - Ppfia1 protein_coding retained_intron MGP_C3HHeJ_T0087503.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149375711 149378474 - Ppfia1 protein_coding retained_intron MGP_C3HHeJ_T0087504.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149388421 149424593 - MGP_C3HHeJ_P0087504 Ppfia1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087505.1 MGP_C3HHeJ_G0032985.1 mouse_genomes_project 7 149389446 149393525 - Ppfia1 protein_coding retained_intron MGP_C3HHeJ_T0015579.1 MGP_C3HHeJ_G0013683.1 mouse_genomes_project 7 40049239 40049833 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008788.1 MGP_C3HHeJ_G0007091.1 mouse_genomes_project 7 46338682 46359784 + lincRNA lincRNA MGP_C3HHeJ_T0008789.1 MGP_C3HHeJ_G0007091.1 mouse_genomes_project 7 46359745 46373740 + lincRNA lincRNA MGP_C3HHeJ_T0005167.1 MGP_C3HHeJ_G0004385.1 mouse_genomes_project 7 82501535 82502995 - Gm44949 antisense antisense MGP_C3HHeJ_T0082424.1 MGP_C3HHeJ_G0031691.1 mouse_genomes_project 7 29167737 29183727 + MGP_C3HHeJ_P0082424 Zfp790 protein_coding protein_coding MGP_C3HHeJ_T0082425.1 MGP_C3HHeJ_G0031691.1 mouse_genomes_project 7 29167737 29183727 + MGP_C3HHeJ_P0082425 Zfp790 protein_coding protein_coding MGP_C3HHeJ_T0081122.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3219676 3232740 + MGP_C3HHeJ_P0081122 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081123.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3219932 3240076 + MGP_C3HHeJ_P0081123 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081124.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3219952 3241010 + MGP_C3HHeJ_P0081124 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081125.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3219963 3240075 + MGP_C3HHeJ_P0081125 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081126.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3221257 3232612 + MGP_C3HHeJ_P0081126 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081127.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3221430 3233220 + Zfp444 protein_coding processed_transcript MGP_C3HHeJ_T0081128.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3221485 3239500 + MGP_C3HHeJ_P0081128 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081129.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3230244 3237812 + MGP_C3HHeJ_P0081129 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0081130.1 MGP_C3HHeJ_G0031298.1 mouse_genomes_project 7 3232364 3237887 + MGP_C3HHeJ_P0081130 Zfp444 protein_coding protein_coding MGP_C3HHeJ_T0002227.1 MGP_C3HHeJ_G0002147.1 mouse_genomes_project 7 78308923 78311567 + TEC TEC MGP_C3HHeJ_T0083655.1 MGP_C3HHeJ_G0031993.1 mouse_genomes_project 7 49813752 49814875 + MGP_C3HHeJ_P0083655 Mrgprb8 protein_coding protein_coding MGP_C3HHeJ_T0102298.1 MGP_C3HHeJ_G0040261.1 mouse_genomes_project 7 106372948 106373890 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015520.1 MGP_C3HHeJ_G0013624.1 mouse_genomes_project 7 14498648 14499387 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084509.1 MGP_C3HHeJ_G0032191.1 mouse_genomes_project 7 90251688 90803236 + MGP_C3HHeJ_P0084509 Grm5 protein_coding protein_coding MGP_C3HHeJ_T0084510.1 MGP_C3HHeJ_G0032191.1 mouse_genomes_project 7 90272066 90803236 + MGP_C3HHeJ_P0084510 Grm5 protein_coding protein_coding MGP_C3HHeJ_T0084511.1 MGP_C3HHeJ_G0032191.1 mouse_genomes_project 7 90480151 90486791 + Grm5 protein_coding processed_transcript MGP_C3HHeJ_T0087076.1 MGP_C3HHeJ_G0032904.1 mouse_genomes_project 7 145674044 145674411 + MGP_C3HHeJ_P0087076 Gm17387 protein_coding protein_coding MGP_C3HHeJ_T0102199.1 MGP_C3HHeJ_G0040163.1 mouse_genomes_project 7 16493387 16502944 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010779.1 MGP_C3HHeJ_G0008912.1 mouse_genomes_project 7 46225528 46225602 - Mir5121 miRNA miRNA MGP_C3HHeJ_T0084856.1 MGP_C3HHeJ_G0032276.1 mouse_genomes_project 7 103867379 103924351 + MGP_C3HHeJ_P0084856 Fam168a protein_coding protein_coding MGP_C3HHeJ_T0015532.1 MGP_C3HHeJ_G0013636.1 mouse_genomes_project 7 18322882 18323455 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084668.1 MGP_C3HHeJ_G0032231.1 mouse_genomes_project 7 100697573 100770419 + Pak1 protein_coding retained_intron MGP_C3HHeJ_T0084669.1 MGP_C3HHeJ_G0032231.1 mouse_genomes_project 7 100697573 100834303 + MGP_C3HHeJ_P0084669 Pak1 protein_coding protein_coding MGP_C3HHeJ_T0084670.1 MGP_C3HHeJ_G0032231.1 mouse_genomes_project 7 100742412 100783301 + MGP_C3HHeJ_P0084670 Pak1 protein_coding protein_coding MGP_C3HHeJ_T0084671.1 MGP_C3HHeJ_G0032231.1 mouse_genomes_project 7 100754372 100834801 + MGP_C3HHeJ_P0084671 Pak1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084672.1 MGP_C3HHeJ_G0032231.1 mouse_genomes_project 7 100754372 100834801 + MGP_C3HHeJ_P0084672 Pak1 protein_coding protein_coding MGP_C3HHeJ_T0084673.1 MGP_C3HHeJ_G0032231.1 mouse_genomes_project 7 100815773 100833702 + Pak1 protein_coding retained_intron MGP_C3HHeJ_T0086370.1 MGP_C3HHeJ_G0032735.1 mouse_genomes_project 7 131466183 131469244 - Zfp688 protein_coding retained_intron MGP_C3HHeJ_T0086371.1 MGP_C3HHeJ_G0032735.1 mouse_genomes_project 7 131466183 131469256 - MGP_C3HHeJ_P0086371 Zfp688 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086372.1 MGP_C3HHeJ_G0032735.1 mouse_genomes_project 7 131466183 131469251 - MGP_C3HHeJ_P0086372 Zfp688 protein_coding protein_coding MGP_C3HHeJ_T0086373.1 MGP_C3HHeJ_G0032735.1 mouse_genomes_project 7 131466185 131469285 - Zfp688 protein_coding retained_intron MGP_C3HHeJ_T0086374.1 MGP_C3HHeJ_G0032735.1 mouse_genomes_project 7 131466562 131469067 - MGP_C3HHeJ_P0086374 Zfp688 protein_coding protein_coding MGP_C3HHeJ_T0086375.1 MGP_C3HHeJ_G0032735.1 mouse_genomes_project 7 131466807 131469184 - MGP_C3HHeJ_P0086375 Zfp688 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008803.1 MGP_C3HHeJ_G0007103.1 mouse_genomes_project 7 67697205 67700373 + 1810008I18Rik lincRNA lincRNA MGP_C3HHeJ_T0008804.1 MGP_C3HHeJ_G0007103.1 mouse_genomes_project 7 67698125 67700536 + 1810008I18Rik lincRNA lincRNA MGP_C3HHeJ_T0081331.1 MGP_C3HHeJ_G0031389.1 mouse_genomes_project 7 13225925 13636560 + MGP_C3HHeJ_P0081331 Obox7 protein_coding protein_coding MGP_C3HHeJ_T0081332.1 MGP_C3HHeJ_G0031389.1 mouse_genomes_project 7 13225925 13636960 + MGP_C3HHeJ_P0081332 Obox7 protein_coding protein_coding MGP_C3HHeJ_T0081333.1 MGP_C3HHeJ_G0031389.1 mouse_genomes_project 7 13225925 13636564 + MGP_C3HHeJ_P0081333 Obox7 protein_coding protein_coding MGP_C3HHeJ_T0083667.1 MGP_C3HHeJ_G0032000.1 mouse_genomes_project 7 50296589 50311757 - MGP_C3HHeJ_P0083667 E2f8 protein_coding protein_coding MGP_C3HHeJ_T0083668.1 MGP_C3HHeJ_G0032000.1 mouse_genomes_project 7 50296589 50311202 - MGP_C3HHeJ_P0083668 E2f8 protein_coding protein_coding MGP_C3HHeJ_T0083669.1 MGP_C3HHeJ_G0032000.1 mouse_genomes_project 7 50302267 50305412 - E2f8 protein_coding retained_intron MGP_C3HHeJ_T0083670.1 MGP_C3HHeJ_G0032000.1 mouse_genomes_project 7 50308993 50311165 - E2f8 protein_coding retained_intron MGP_C3HHeJ_T0084830.1 MGP_C3HHeJ_G0032271.1 mouse_genomes_project 7 103563584 103576674 - MGP_C3HHeJ_P0084830 Dnajb13 protein_coding protein_coding MGP_C3HHeJ_T0084831.1 MGP_C3HHeJ_G0032271.1 mouse_genomes_project 7 103563587 103575103 - Dnajb13 protein_coding processed_transcript MGP_C3HHeJ_T0084832.1 MGP_C3HHeJ_G0032271.1 mouse_genomes_project 7 103563645 103573505 - Dnajb13 protein_coding processed_transcript MGP_C3HHeJ_T0005199.1 MGP_C3HHeJ_G0004407.1 mouse_genomes_project 7 117094125 117119830 - Far1os antisense antisense MGP_C3HHeJ_T0005200.1 MGP_C3HHeJ_G0004407.1 mouse_genomes_project 7 117101513 117129849 - Far1os antisense antisense MGP_C3HHeJ_T0085863.1 MGP_C3HHeJ_G0032643.1 mouse_genomes_project 7 125698363 125758861 + MGP_C3HHeJ_P0085863 Scnn1b protein_coding protein_coding MGP_C3HHeJ_T0085864.1 MGP_C3HHeJ_G0032643.1 mouse_genomes_project 7 125698402 125758863 + MGP_C3HHeJ_P0085864 Scnn1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085867.1 MGP_C3HHeJ_G0032643.1 mouse_genomes_project 7 125739030 125752337 + MGP_C3HHeJ_P0085867 Scnn1b protein_coding protein_coding MGP_C3HHeJ_T0081412.1 MGP_C3HHeJ_G0031413.1 mouse_genomes_project 7 14477421 14600198 - MGP_C3HHeJ_P0081412 Arhgap35 protein_coding protein_coding MGP_C3HHeJ_T0081413.1 MGP_C3HHeJ_G0031413.1 mouse_genomes_project 7 14479961 14600142 - MGP_C3HHeJ_P0081413 Arhgap35 protein_coding protein_coding MGP_C3HHeJ_T0011587.1 MGP_C3HHeJ_G0009720.1 mouse_genomes_project 7 29695403 29695774 + Gm24757 misc_RNA misc_RNA MGP_C3HHeJ_T0086469.1 MGP_C3HHeJ_G0032751.1 mouse_genomes_project 7 131844592 131868862 + MGP_C3HHeJ_P0086469 Setd1a protein_coding protein_coding MGP_C3HHeJ_T0086470.1 MGP_C3HHeJ_G0032751.1 mouse_genomes_project 7 131845071 131851993 + MGP_C3HHeJ_P0086470 Setd1a protein_coding protein_coding MGP_C3HHeJ_T0086471.1 MGP_C3HHeJ_G0032751.1 mouse_genomes_project 7 131845311 131851620 + MGP_C3HHeJ_P0086471 Setd1a protein_coding protein_coding MGP_C3HHeJ_T0086472.1 MGP_C3HHeJ_G0032751.1 mouse_genomes_project 7 131845311 131868855 + MGP_C3HHeJ_P0086472 Setd1a protein_coding protein_coding MGP_C3HHeJ_T0086473.1 MGP_C3HHeJ_G0032751.1 mouse_genomes_project 7 131845617 131846488 + MGP_C3HHeJ_P0086473 Setd1a protein_coding protein_coding MGP_C3HHeJ_T0086474.1 MGP_C3HHeJ_G0032751.1 mouse_genomes_project 7 131846499 131849826 + Setd1a protein_coding processed_transcript MGP_C3HHeJ_T0100858.1 MGP_C3HHeJ_G0039052.1 mouse_genomes_project 7 119957523 119957610 - Snord14a snoRNA snoRNA MGP_C3HHeJ_T0081739.1 MGP_C3HHeJ_G0031518.1 mouse_genomes_project 7 22689450 22691632 + MGP_C3HHeJ_P0081739 V1rd19 protein_coding protein_coding MGP_C3HHeJ_T0083022.1 MGP_C3HHeJ_G0031819.1 mouse_genomes_project 7 42780579 42826726 - MGP_C3HHeJ_P0083022 Vmn2r59 protein_coding protein_coding MGP_C3HHeJ_T0081530.1 MGP_C3HHeJ_G0031453.1 mouse_genomes_project 7 17335637 17337200 + MGP_C3HHeJ_P0081530 Nanos2 protein_coding protein_coding MGP_C3HHeJ_T0083327.1 MGP_C3HHeJ_G0031901.1 mouse_genomes_project 7 46113567 46118954 + MGP_C3HHeJ_P0083327 Rras protein_coding unknown_likely_coding MGP_C3HHeJ_T0008883.1 MGP_C3HHeJ_G0007156.1 mouse_genomes_project 7 95823563 95852795 - Gm9934 lincRNA lincRNA MGP_C3HHeJ_T0008884.1 MGP_C3HHeJ_G0007156.1 mouse_genomes_project 7 95839132 95852563 - Gm9934 lincRNA lincRNA MGP_C3HHeJ_T0008907.1 MGP_C3HHeJ_G0007171.1 mouse_genomes_project 7 118444690 118447918 - Gm45017 lincRNA lincRNA MGP_C3HHeJ_T0087077.1 MGP_C3HHeJ_G0032905.1 mouse_genomes_project 7 145715008 145725737 + MGP_C3HHeJ_P0087077 B4galnt4 protein_coding protein_coding MGP_C3HHeJ_T0008963.1 MGP_C3HHeJ_G0007207.1 mouse_genomes_project 7 135412307 135416449 + 1700029B22Rik lincRNA lincRNA MGP_C3HHeJ_T0008964.1 MGP_C3HHeJ_G0007207.1 mouse_genomes_project 7 135412312 135416449 + 1700029B22Rik lincRNA lincRNA MGP_C3HHeJ_T0008965.1 MGP_C3HHeJ_G0007207.1 mouse_genomes_project 7 135412350 135416427 + 1700029B22Rik lincRNA lincRNA MGP_C3HHeJ_T0015487.1 MGP_C3HHeJ_G0013591.1 mouse_genomes_project 7 949537 949817 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084157.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82043387 82081743 + MGP_C3HHeJ_P0084157 Ticrr protein_coding protein_coding MGP_C3HHeJ_T0084158.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82043413 82044867 + Ticrr protein_coding retained_intron MGP_C3HHeJ_T0084159.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82043422 82081729 + MGP_C3HHeJ_P0084159 Ticrr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084160.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82043436 82068090 + MGP_C3HHeJ_P0084160 Ticrr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084161.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82043438 82077525 + MGP_C3HHeJ_P0084161 Ticrr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084162.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82052812 82058903 + Ticrr protein_coding processed_transcript MGP_C3HHeJ_T0084163.1 MGP_C3HHeJ_G0032095.1 mouse_genomes_project 7 82054202 82058903 + Ticrr protein_coding retained_intron MGP_C3HHeJ_T0005127.1 MGP_C3HHeJ_G0004358.1 mouse_genomes_project 7 35267420 35268982 - Gm45091 antisense antisense MGP_C3HHeJ_T0010795.1 MGP_C3HHeJ_G0008928.1 mouse_genomes_project 7 63458815 63458881 - Mir344e miRNA miRNA MGP_C3HHeJ_T0083335.1 MGP_C3HHeJ_G0031908.1 mouse_genomes_project 7 46224257 46227356 - MGP_C3HHeJ_P0083335 protein_coding protein_coding MGP_C3HHeJ_T0087112.1 MGP_C3HHeJ_G0032913.1 mouse_genomes_project 7 145876741 145880779 - MGP_C3HHeJ_P0087112 Lmntd2 protein_coding protein_coding MGP_C3HHeJ_T0087113.1 MGP_C3HHeJ_G0032913.1 mouse_genomes_project 7 145876741 145880781 - MGP_C3HHeJ_P0087113 Lmntd2 protein_coding protein_coding MGP_C3HHeJ_T0002238.1 MGP_C3HHeJ_G0002158.1 mouse_genomes_project 7 81888618 81888965 + TEC TEC MGP_C3HHeJ_T0098301.1 MGP_C3HHeJ_G0036513.1 mouse_genomes_project 7 84038107 84038234 + Mir1839 scaRNA scaRNA MGP_C3HHeJ_T0084847.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103711158 103725308 - MGP_C3HHeJ_P0084847 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084848.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103711161 103731018 - MGP_C3HHeJ_P0084848 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084849.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103711161 103731067 - MGP_C3HHeJ_P0084849 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084850.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103711161 103723861 - MGP_C3HHeJ_P0084850 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084851.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103711165 103725338 - MGP_C3HHeJ_P0084851 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084852.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103712069 103720683 - Plekhb1 protein_coding retained_intron MGP_C3HHeJ_T0084853.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103712211 103730968 - MGP_C3HHeJ_P0084853 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084854.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103712833 103723984 - MGP_C3HHeJ_P0084854 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0084855.1 MGP_C3HHeJ_G0032275.1 mouse_genomes_project 7 103712901 103725304 - MGP_C3HHeJ_P0084855 Plekhb1 protein_coding protein_coding MGP_C3HHeJ_T0086753.1 MGP_C3HHeJ_G0032806.1 mouse_genomes_project 7 136259022 136289771 + MGP_C3HHeJ_P0086753 Gpr26 protein_coding protein_coding MGP_C3HHeJ_T0082713.1 MGP_C3HHeJ_G0031756.1 mouse_genomes_project 7 30407479 30410000 + Fam187b protein_coding retained_intron MGP_C3HHeJ_T0082714.1 MGP_C3HHeJ_G0031756.1 mouse_genomes_project 7 30407493 30423410 + MGP_C3HHeJ_P0082714 Fam187b protein_coding protein_coding MGP_C3HHeJ_T0082715.1 MGP_C3HHeJ_G0031756.1 mouse_genomes_project 7 30410732 30423416 + MGP_C3HHeJ_P0082715 Fam187b protein_coding protein_coding MGP_C3HHeJ_T0082716.1 MGP_C3HHeJ_G0031756.1 mouse_genomes_project 7 30415559 30423152 + MGP_C3HHeJ_P0082716 Fam187b protein_coding protein_coding MGP_C3HHeJ_T0081876.1 MGP_C3HHeJ_G0031555.1 mouse_genomes_project 7 23763677 23766679 - MGP_C3HHeJ_P0081876 Rabac1 protein_coding protein_coding MGP_C3HHeJ_T0081877.1 MGP_C3HHeJ_G0031555.1 mouse_genomes_project 7 23763678 23765909 - Rabac1 protein_coding retained_intron MGP_C3HHeJ_T0081878.1 MGP_C3HHeJ_G0031555.1 mouse_genomes_project 7 23763686 23765951 - Rabac1 protein_coding processed_transcript MGP_C3HHeJ_T0081879.1 MGP_C3HHeJ_G0031555.1 mouse_genomes_project 7 23763686 23766563 - MGP_C3HHeJ_P0081879 Rabac1 protein_coding protein_coding MGP_C3HHeJ_T0081880.1 MGP_C3HHeJ_G0031555.1 mouse_genomes_project 7 23763687 23766152 - Rabac1 protein_coding processed_transcript MGP_C3HHeJ_T0081881.1 MGP_C3HHeJ_G0031555.1 mouse_genomes_project 7 23765424 23766477 - Rabac1 protein_coding retained_intron MGP_C3HHeJ_T0008830.1 MGP_C3HHeJ_G0007124.1 mouse_genomes_project 7 75341578 75344849 + Gm44670 lincRNA lincRNA MGP_C3HHeJ_T0008831.1 MGP_C3HHeJ_G0007124.1 mouse_genomes_project 7 75341637 75345284 + Gm44670 lincRNA lincRNA MGP_C3HHeJ_T0084381.1 MGP_C3HHeJ_G0032135.1 mouse_genomes_project 7 84041516 84078493 - MGP_C3HHeJ_P0084381 Fsd2 protein_coding protein_coding MGP_C3HHeJ_T0083644.1 MGP_C3HHeJ_G0031985.1 mouse_genomes_project 7 48298125 48354928 - MGP_C3HHeJ_P0083644 Ptpn5 protein_coding protein_coding MGP_C3HHeJ_T0083645.1 MGP_C3HHeJ_G0031985.1 mouse_genomes_project 7 48298129 48353922 - MGP_C3HHeJ_P0083645 Ptpn5 protein_coding protein_coding MGP_C3HHeJ_T0085120.1 MGP_C3HHeJ_G0032386.1 mouse_genomes_project 7 107241684 107242623 + MGP_C3HHeJ_P0085120 Olfr633 protein_coding protein_coding MGP_C3HHeJ_T0087462.1 MGP_C3HHeJ_G0032979.1 mouse_genomes_project 7 148612133 148618541 - MGP_C3HHeJ_P0087462 Mrgpre protein_coding protein_coding MGP_C3HHeJ_T0101267.1 MGP_C3HHeJ_G0039378.1 mouse_genomes_project 7 70641027 70642581 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101268.1 MGP_C3HHeJ_G0039378.1 mouse_genomes_project 7 70641409 70642129 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099584.1 MGP_C3HHeJ_G0037778.1 mouse_genomes_project 7 75832813 75832918 - Gm26176 snRNA snRNA MGP_C3HHeJ_T0081017.1 MGP_C3HHeJ_G0031257.1 mouse_genomes_project 7 1630948 1657956 - MGP_C3HHeJ_P0081017 Hspbp1 protein_coding protein_coding MGP_C3HHeJ_T0081018.1 MGP_C3HHeJ_G0031257.1 mouse_genomes_project 7 1632563 1635033 - MGP_C3HHeJ_P0081018 Hspbp1 protein_coding protein_coding MGP_C3HHeJ_T0081019.1 MGP_C3HHeJ_G0031257.1 mouse_genomes_project 7 1634603 1635198 - Hspbp1 protein_coding processed_transcript MGP_C3HHeJ_T0081020.1 MGP_C3HHeJ_G0031257.1 mouse_genomes_project 7 1635010 1657882 - MGP_C3HHeJ_P0081020 Hspbp1 protein_coding protein_coding MGP_C3HHeJ_T0081021.1 MGP_C3HHeJ_G0031257.1 mouse_genomes_project 7 1648939 1657549 - MGP_C3HHeJ_P0081021 Hspbp1 protein_coding protein_coding MGP_C3HHeJ_T0081022.1 MGP_C3HHeJ_G0031257.1 mouse_genomes_project 7 1648939 1657869 - MGP_C3HHeJ_P0081022 Hspbp1 protein_coding protein_coding MGP_C3HHeJ_T0083503.1 MGP_C3HHeJ_G0031950.1 mouse_genomes_project 7 46863533 46871850 + MGP_C3HHeJ_P0083503 Fam83e protein_coding protein_coding MGP_C3HHeJ_T0083504.1 MGP_C3HHeJ_G0031950.1 mouse_genomes_project 7 46863541 46867195 + Fam83e protein_coding retained_intron MGP_C3HHeJ_T0083506.1 MGP_C3HHeJ_G0031950.1 mouse_genomes_project 7 46868192 46871847 + Fam83e protein_coding processed_transcript MGP_C3HHeJ_T0102287.1 MGP_C3HHeJ_G0040250.1 mouse_genomes_project 7 88706878 88707775 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015642.1 MGP_C3HHeJ_G0013746.1 mouse_genomes_project 7 77121166 77121973 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102315.1 MGP_C3HHeJ_G0040278.1 mouse_genomes_project 7 107932404 107933370 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083865.1 MGP_C3HHeJ_G0032042.1 mouse_genomes_project 7 66269236 66275388 + Mcee protein_coding processed_transcript MGP_C3HHeJ_T0083866.1 MGP_C3HHeJ_G0032042.1 mouse_genomes_project 7 66269273 66288705 + MGP_C3HHeJ_P0083866 Mcee protein_coding protein_coding MGP_C3HHeJ_T0083867.1 MGP_C3HHeJ_G0032042.1 mouse_genomes_project 7 66269368 66288701 + MGP_C3HHeJ_P0083867 Mcee protein_coding protein_coding MGP_C3HHeJ_T0083868.1 MGP_C3HHeJ_G0032042.1 mouse_genomes_project 7 66269403 66288701 + MGP_C3HHeJ_P0083868 Mcee protein_coding protein_coding MGP_C3HHeJ_T0002268.1 MGP_C3HHeJ_G0002188.1 mouse_genomes_project 7 130356084 130357972 + TEC TEC MGP_C3HHeJ_T0083209.1 MGP_C3HHeJ_G0031873.1 mouse_genomes_project 7 45552672 45576621 - MGP_C3HHeJ_P0083209 Mybpc2 protein_coding protein_coding MGP_C3HHeJ_T0083210.1 MGP_C3HHeJ_G0031873.1 mouse_genomes_project 7 45552805 45583091 - MGP_C3HHeJ_P0083210 Mybpc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081491.1 MGP_C3HHeJ_G0031434.1 mouse_genomes_project 7 15997004 16000073 + MGP_C3HHeJ_P0081491 Ceacam14 protein_coding protein_coding MGP_C3HHeJ_T0082472.1 MGP_C3HHeJ_G0031705.1 mouse_genomes_project 7 29535621 29545347 - MGP_C3HHeJ_P0082472 Zfp146 protein_coding protein_coding MGP_C3HHeJ_T0082473.1 MGP_C3HHeJ_G0031705.1 mouse_genomes_project 7 29537071 29537721 - Zfp146 protein_coding processed_transcript MGP_C3HHeJ_T0102241.1 MGP_C3HHeJ_G0040204.1 mouse_genomes_project 7 48554993 48555911 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015735.1 MGP_C3HHeJ_G0013839.1 mouse_genomes_project 7 145408573 145409060 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082192.1 MGP_C3HHeJ_G0031633.1 mouse_genomes_project 7 27107981 27129482 - MGP_C3HHeJ_P0082192 Zfp780b protein_coding protein_coding MGP_C3HHeJ_T0085149.1 MGP_C3HHeJ_G0032406.1 mouse_genomes_project 7 107542103 107552212 + MGP_C3HHeJ_P0085149 protein_coding protein_coding MGP_C3HHeJ_T0085150.1 MGP_C3HHeJ_G0032406.1 mouse_genomes_project 7 107542105 107552212 + MGP_C3HHeJ_P0085150 protein_coding protein_coding MGP_C3HHeJ_T0085152.1 MGP_C3HHeJ_G0032406.1 mouse_genomes_project 7 107542201 107555232 + MGP_C3HHeJ_P0085152 protein_coding protein_coding MGP_C3HHeJ_T0085153.1 MGP_C3HHeJ_G0032406.1 mouse_genomes_project 7 107542210 107551387 + MGP_C3HHeJ_P0085153 protein_coding protein_coding MGP_C3HHeJ_T0081732.1 MGP_C3HHeJ_G0031511.1 mouse_genomes_project 7 22092945 22094538 - MGP_C3HHeJ_P0081732 protein_coding protein_coding MGP_C3HHeJ_T0085081.1 MGP_C3HHeJ_G0032349.1 mouse_genomes_project 7 106448411 106449347 + MGP_C3HHeJ_P0085081 Olfr594 protein_coding protein_coding MGP_C3HHeJ_T0081315.1 MGP_C3HHeJ_G0031378.1 mouse_genomes_project 7 11848648 11894454 - MGP_C3HHeJ_P0081315 protein_coding protein_coding MGP_C3HHeJ_T0008932.1 MGP_C3HHeJ_G0007186.1 mouse_genomes_project 7 129342361 129343482 - Gm44766 lincRNA lincRNA MGP_C3HHeJ_T0085585.1 MGP_C3HHeJ_G0032580.1 mouse_genomes_project 7 118005350 118132943 + MGP_C3HHeJ_P0085585 Pde3b protein_coding protein_coding MGP_C3HHeJ_T0085586.1 MGP_C3HHeJ_G0032580.1 mouse_genomes_project 7 118099872 118102155 + Pde3b protein_coding retained_intron MGP_C3HHeJ_T0085587.1 MGP_C3HHeJ_G0032580.1 mouse_genomes_project 7 118115445 118124709 + Pde3b protein_coding retained_intron MGP_C3HHeJ_T0085365.1 MGP_C3HHeJ_G0032506.1 mouse_genomes_project 7 111436578 111437517 + MGP_C3HHeJ_P0085365 Olfr481 protein_coding protein_coding MGP_C3HHeJ_T0015485.1 MGP_C3HHeJ_G0013589.1 mouse_genomes_project 7 916648 917480 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085058.1 MGP_C3HHeJ_G0032328.1 mouse_genomes_project 7 106012643 106013714 + MGP_C3HHeJ_P0085058 Olfr561 protein_coding protein_coding MGP_C3HHeJ_T0015689.1 MGP_C3HHeJ_G0013793.1 mouse_genomes_project 7 107115714 107115976 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011608.1 MGP_C3HHeJ_G0009741.1 mouse_genomes_project 7 148070296 148070415 + Gm27803 misc_RNA misc_RNA MGP_C3HHeJ_T0015723.1 MGP_C3HHeJ_G0013827.1 mouse_genomes_project 7 132221373 132221720 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084559.1 MGP_C3HHeJ_G0032207.1 mouse_genomes_project 7 93134186 93137556 + MGP_C3HHeJ_P0084559 Crebzf protein_coding protein_coding MGP_C3HHeJ_T0084560.1 MGP_C3HHeJ_G0032207.1 mouse_genomes_project 7 93134238 93141654 + MGP_C3HHeJ_P0084560 Crebzf protein_coding protein_coding MGP_C3HHeJ_T0084561.1 MGP_C3HHeJ_G0032207.1 mouse_genomes_project 7 93135127 93136160 + Crebzf protein_coding processed_transcript MGP_C3HHeJ_T0084562.1 MGP_C3HHeJ_G0032207.1 mouse_genomes_project 7 93135127 93135835 + MGP_C3HHeJ_P0084562 Crebzf protein_coding protein_coding MGP_C3HHeJ_T0102227.1 MGP_C3HHeJ_G0040190.1 mouse_genomes_project 7 43184801 43184936 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083769.1 MGP_C3HHeJ_G0032019.1 mouse_genomes_project 7 57576740 57619921 - MGP_C3HHeJ_P0083769 Nipa1 protein_coding protein_coding MGP_C3HHeJ_T0085635.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119733685 119852393 - MGP_C3HHeJ_P0085635 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085636.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119733693 119929358 - MGP_C3HHeJ_P0085636 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085637.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119733726 119742874 - MGP_C3HHeJ_P0085637 Plekha7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085638.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119736234 119801422 - MGP_C3HHeJ_P0085638 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085639.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119743963 119801699 - MGP_C3HHeJ_P0085639 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085640.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119745102 119929336 - MGP_C3HHeJ_P0085640 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085641.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119745199 119929314 - MGP_C3HHeJ_P0085641 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085642.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119752868 119768023 - MGP_C3HHeJ_P0085642 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085643.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119766199 119852247 - Plekha7 protein_coding retained_intron MGP_C3HHeJ_T0085644.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119773316 119774252 - Plekha7 protein_coding retained_intron MGP_C3HHeJ_T0085645.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119774628 119796610 - Plekha7 protein_coding processed_transcript MGP_C3HHeJ_T0085646.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119780843 119875334 - MGP_C3HHeJ_P0085646 Plekha7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085647.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119780966 119799095 - Plekha7 protein_coding processed_transcript MGP_C3HHeJ_T0085648.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119787823 119929222 - MGP_C3HHeJ_P0085648 Plekha7 protein_coding protein_coding MGP_C3HHeJ_T0085649.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119788997 119929031 - Plekha7 protein_coding retained_intron MGP_C3HHeJ_T0085650.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119789043 119792771 - Plekha7 protein_coding retained_intron MGP_C3HHeJ_T0085651.1 MGP_C3HHeJ_G0032587.1 mouse_genomes_project 7 119793338 119881296 - Plekha7 protein_coding processed_transcript MGP_C3HHeJ_T0102277.1 MGP_C3HHeJ_G0040240.1 mouse_genomes_project 7 88071411 88074110 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086192.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130792426 130796447 - MGP_C3HHeJ_P0086192 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086193.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130792427 130798195 - MGP_C3HHeJ_P0086193 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086194.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130792428 130796334 - MGP_C3HHeJ_P0086194 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086195.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793104 130795475 - Aldoa protein_coding processed_transcript MGP_C3HHeJ_T0086196.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793141 130795500 - Aldoa protein_coding retained_intron MGP_C3HHeJ_T0086197.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793141 130794944 - Aldoa protein_coding retained_intron MGP_C3HHeJ_T0086198.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793231 130797794 - MGP_C3HHeJ_P0086198 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086199.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793463 130796186 - MGP_C3HHeJ_P0086199 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086200.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793674 130796363 - Aldoa protein_coding retained_intron MGP_C3HHeJ_T0086201.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793860 130796302 - MGP_C3HHeJ_P0086201 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086202.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130793910 130797784 - MGP_C3HHeJ_P0086202 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0086203.1 MGP_C3HHeJ_G0032698.1 mouse_genomes_project 7 130794032 130798499 - MGP_C3HHeJ_P0086203 Aldoa protein_coding protein_coding MGP_C3HHeJ_T0005129.1 MGP_C3HHeJ_G0004360.1 mouse_genomes_project 7 35993983 36036448 + E130304I02Rik antisense antisense MGP_C3HHeJ_T0005130.1 MGP_C3HHeJ_G0004360.1 mouse_genomes_project 7 35993984 35994419 + E130304I02Rik antisense antisense MGP_C3HHeJ_T0099597.1 MGP_C3HHeJ_G0037791.1 mouse_genomes_project 7 107554628 107554728 - Gm24783 snRNA snRNA MGP_C3HHeJ_T0086688.1 MGP_C3HHeJ_G0032788.1 mouse_genomes_project 7 134592115 134719725 - MGP_C3HHeJ_P0086688 Ate1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086689.1 MGP_C3HHeJ_G0032788.1 mouse_genomes_project 7 134592155 134719794 - MGP_C3HHeJ_P0086689 Ate1 protein_coding protein_coding MGP_C3HHeJ_T0086690.1 MGP_C3HHeJ_G0032788.1 mouse_genomes_project 7 134592155 134719803 - MGP_C3HHeJ_P0086690 Ate1 protein_coding protein_coding MGP_C3HHeJ_T0086691.1 MGP_C3HHeJ_G0032788.1 mouse_genomes_project 7 134595187 134720225 - MGP_C3HHeJ_P0086691 Ate1 protein_coding protein_coding MGP_C3HHeJ_T0086692.1 MGP_C3HHeJ_G0032788.1 mouse_genomes_project 7 134595187 134720225 - MGP_C3HHeJ_P0086692 Ate1 protein_coding protein_coding MGP_C3HHeJ_T0083653.1 MGP_C3HHeJ_G0031991.1 mouse_genomes_project 7 49560226 49561263 - MGP_C3HHeJ_P0083653 Mrgprb5 protein_coding protein_coding MGP_C3HHeJ_T0084488.1 MGP_C3HHeJ_G0032179.1 mouse_genomes_project 7 89089870 89090869 - MGP_C3HHeJ_P0084488 Olfr298 protein_coding protein_coding MGP_C3HHeJ_T0080929.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093542 1098714 + MGP_C3HHeJ_P0080929 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080930.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093552 1096509 + MGP_C3HHeJ_P0080930 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080931.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093552 1104708 + MGP_C3HHeJ_P0080931 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080932.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093563 1096962 + MGP_C3HHeJ_P0080932 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080933.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093569 1104703 + MGP_C3HHeJ_P0080933 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080934.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093574 1098639 + MGP_C3HHeJ_P0080934 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080935.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1093587 1104704 + Leng8 protein_coding retained_intron MGP_C3HHeJ_T0080936.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1094071 1097603 + MGP_C3HHeJ_P0080936 Leng8 protein_coding protein_coding MGP_C3HHeJ_T0080937.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1098689 1099460 + Leng8 protein_coding retained_intron MGP_C3HHeJ_T0080938.1 MGP_C3HHeJ_G0031241.1 mouse_genomes_project 7 1101250 1102173 + Leng8 protein_coding retained_intron MGP_C3HHeJ_T0083602.1 MGP_C3HHeJ_G0031975.1 mouse_genomes_project 7 47935273 47939683 - MGP_C3HHeJ_P0083602 Saa4 protein_coding protein_coding MGP_C3HHeJ_T0085458.1 MGP_C3HHeJ_G0032552.1 mouse_genomes_project 7 113524247 113559521 + MGP_C3HHeJ_P0085458 Zfp143 protein_coding protein_coding MGP_C3HHeJ_T0085459.1 MGP_C3HHeJ_G0032552.1 mouse_genomes_project 7 113524255 113559516 + MGP_C3HHeJ_P0085459 Zfp143 protein_coding protein_coding MGP_C3HHeJ_T0083064.1 MGP_C3HHeJ_G0031833.1 mouse_genomes_project 7 44460515 44469384 + MGP_C3HHeJ_P0083064 Vsig10l protein_coding protein_coding MGP_C3HHeJ_T0083065.1 MGP_C3HHeJ_G0031833.1 mouse_genomes_project 7 44460597 44468409 + MGP_C3HHeJ_P0083065 Vsig10l protein_coding protein_coding MGP_C3HHeJ_T0083066.1 MGP_C3HHeJ_G0031833.1 mouse_genomes_project 7 44462041 44462698 + Vsig10l protein_coding retained_intron MGP_C3HHeJ_T0083067.1 MGP_C3HHeJ_G0031833.1 mouse_genomes_project 7 44463078 44465043 + Vsig10l protein_coding processed_transcript MGP_C3HHeJ_T0083068.1 MGP_C3HHeJ_G0031833.1 mouse_genomes_project 7 44464979 44468364 + MGP_C3HHeJ_P0083068 Vsig10l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101480.1 MGP_C3HHeJ_G0039480.1 mouse_genomes_project 7 44941334 44945827 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101481.1 MGP_C3HHeJ_G0039480.1 mouse_genomes_project 7 44943137 44946954 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0087530.1 MGP_C3HHeJ_G0032995.1 mouse_genomes_project 7 150223684 150235434 + MGP_C3HHeJ_P0087530 Mrgprd protein_coding protein_coding MGP_C3HHeJ_T0011610.1 MGP_C3HHeJ_G0009743.1 mouse_genomes_project 7 148245091 148245152 + Gm27901 misc_RNA misc_RNA MGP_C3HHeJ_T0018144.1 MGP_C3HHeJ_G0015432.1 mouse_genomes_project 7 57579110 57580045 + Gm15888 processed_transcript processed_transcript MGP_C3HHeJ_T0083053.1 MGP_C3HHeJ_G0031830.1 mouse_genomes_project 7 44437025 44439578 + MGP_C3HHeJ_P0083053 Cldnd2 protein_coding protein_coding MGP_C3HHeJ_T0083054.1 MGP_C3HHeJ_G0031830.1 mouse_genomes_project 7 44437819 44439543 + MGP_C3HHeJ_P0083054 Cldnd2 protein_coding protein_coding MGP_C3HHeJ_T0002169.1 MGP_C3HHeJ_G0002090.1 mouse_genomes_project 7 35445309 35446064 + TEC TEC MGP_C3HHeJ_T0086517.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131981309 131988230 + MGP_C3HHeJ_P0086517 Bckdk protein_coding protein_coding MGP_C3HHeJ_T0086518.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131981330 131983185 + Bckdk protein_coding retained_intron MGP_C3HHeJ_T0086519.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131981867 131983394 + MGP_C3HHeJ_P0086519 Bckdk protein_coding protein_coding MGP_C3HHeJ_T0086520.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131981989 131985831 + MGP_C3HHeJ_P0086520 Bckdk protein_coding protein_coding MGP_C3HHeJ_T0086521.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131981989 131985831 + MGP_C3HHeJ_P0086521 Bckdk protein_coding protein_coding MGP_C3HHeJ_T0086522.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131982144 131983606 + MGP_C3HHeJ_P0086522 Bckdk protein_coding protein_coding MGP_C3HHeJ_T0086523.1 MGP_C3HHeJ_G0032761.1 mouse_genomes_project 7 131984462 131985823 + MGP_C3HHeJ_P0086523 Bckdk protein_coding protein_coding MGP_C3HHeJ_T0083126.1 MGP_C3HHeJ_G0031858.1 mouse_genomes_project 7 45005419 45240272 + MGP_C3HHeJ_P0083126 Klk1b9 protein_coding protein_coding MGP_C3HHeJ_T0081099.1 MGP_C3HHeJ_G0031283.1 mouse_genomes_project 7 2068283 2070474 + MGP_C3HHeJ_P0081099 Zfp580 protein_coding protein_coding MGP_C3HHeJ_T0083413.1 MGP_C3HHeJ_G0031926.1 mouse_genomes_project 7 46520279 46524851 + MGP_C3HHeJ_P0083413 Ntf5 protein_coding protein_coding MGP_C3HHeJ_T0087075.1 MGP_C3HHeJ_G0032903.1 mouse_genomes_project 7 145654828 145655909 - MGP_C3HHeJ_P0087075 Ifitm6 protein_coding protein_coding MGP_C3HHeJ_T0005131.1 MGP_C3HHeJ_G0004361.1 mouse_genomes_project 7 37937733 37940286 + 4930505M18Rik antisense antisense MGP_C3HHeJ_T0008776.1 MGP_C3HHeJ_G0007082.1 mouse_genomes_project 7 41171229 41187603 + 4933402C06Rik lincRNA lincRNA MGP_C3HHeJ_T0008777.1 MGP_C3HHeJ_G0007082.1 mouse_genomes_project 7 41171229 41179754 + 4933402C06Rik lincRNA lincRNA MGP_C3HHeJ_T0005172.1 MGP_C3HHeJ_G0004389.1 mouse_genomes_project 7 85281236 85294611 - 4933406J10Rik antisense antisense MGP_C3HHeJ_T0099573.1 MGP_C3HHeJ_G0037767.1 mouse_genomes_project 7 41379055 41379136 + Gm25784 snRNA snRNA MGP_C3HHeJ_T0005064.1 MGP_C3HHeJ_G0004314.1 mouse_genomes_project 7 552571 558455 + Gm15929 antisense antisense MGP_C3HHeJ_T0084306.1 MGP_C3HHeJ_G0032121.1 mouse_genomes_project 7 83029081 83135911 - MGP_C3HHeJ_P0084306 Crtc3 protein_coding protein_coding MGP_C3HHeJ_T0084307.1 MGP_C3HHeJ_G0032121.1 mouse_genomes_project 7 83035285 83052908 - MGP_C3HHeJ_P0084307 Crtc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084308.1 MGP_C3HHeJ_G0032121.1 mouse_genomes_project 7 83038178 83041510 - Crtc3 protein_coding retained_intron MGP_C3HHeJ_T0084309.1 MGP_C3HHeJ_G0032121.1 mouse_genomes_project 7 83038240 83072578 - MGP_C3HHeJ_P0084309 Crtc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084310.1 MGP_C3HHeJ_G0032121.1 mouse_genomes_project 7 83061055 83072659 - Crtc3 protein_coding retained_intron MGP_C3HHeJ_T0084311.1 MGP_C3HHeJ_G0032121.1 mouse_genomes_project 7 83117942 83135911 - Crtc3 protein_coding retained_intron MGP_C3HHeJ_T0081810.1 MGP_C3HHeJ_G0031538.1 mouse_genomes_project 7 23266388 23271146 - MGP_C3HHeJ_P0081810 Pinlyp protein_coding protein_coding MGP_C3HHeJ_T0086055.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130391854 130411168 + Rabep2 protein_coding retained_intron MGP_C3HHeJ_T0086056.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130392186 130411176 + MGP_C3HHeJ_P0086056 Rabep2 protein_coding protein_coding MGP_C3HHeJ_T0086057.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130392194 130399143 + Rabep2 protein_coding retained_intron MGP_C3HHeJ_T0086058.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130392477 130401426 + MGP_C3HHeJ_P0086058 Rabep2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086059.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130392523 130401417 + MGP_C3HHeJ_P0086059 Rabep2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086060.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130401185 130401749 + Rabep2 protein_coding retained_intron MGP_C3HHeJ_T0086061.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130403302 130409951 + Rabep2 protein_coding retained_intron MGP_C3HHeJ_T0086062.1 MGP_C3HHeJ_G0032677.1 mouse_genomes_project 7 130410066 130414512 + Rabep2 protein_coding retained_intron MGP_C3HHeJ_T0099585.1 MGP_C3HHeJ_G0037779.1 mouse_genomes_project 7 77883129 77883213 + Gm25282 snRNA snRNA MGP_C3HHeJ_T0086213.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130846706 130848816 + MGP_C3HHeJ_P0086213 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086214.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130846843 130851996 + MGP_C3HHeJ_P0086214 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086215.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130846928 130848043 + Doc2a protein_coding processed_transcript MGP_C3HHeJ_T0086216.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130846988 130847983 + MGP_C3HHeJ_P0086216 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086217.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130847016 130850630 + MGP_C3HHeJ_P0086217 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086218.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130847217 130848127 + MGP_C3HHeJ_P0086218 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086219.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130847252 130848126 + MGP_C3HHeJ_P0086219 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086220.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130847545 130849051 + MGP_C3HHeJ_P0086220 Doc2a protein_coding protein_coding MGP_C3HHeJ_T0086221.1 MGP_C3HHeJ_G0032701.1 mouse_genomes_project 7 130848087 130851327 + MGP_C3HHeJ_P0086221 Doc2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082290.1 MGP_C3HHeJ_G0031662.1 mouse_genomes_project 7 27970968 27974296 + MGP_C3HHeJ_P0082290 Ccer2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082291.1 MGP_C3HHeJ_G0031662.1 mouse_genomes_project 7 27971494 27974286 + MGP_C3HHeJ_P0082291 Ccer2 protein_coding protein_coding MGP_C3HHeJ_T0086277.1 MGP_C3HHeJ_G0032710.1 mouse_genomes_project 7 130990165 131019522 - MGP_C3HHeJ_P0086277 Mvp protein_coding protein_coding MGP_C3HHeJ_T0086278.1 MGP_C3HHeJ_G0032710.1 mouse_genomes_project 7 131002655 131015979 - MGP_C3HHeJ_P0086278 Mvp protein_coding protein_coding MGP_C3HHeJ_T0086280.1 MGP_C3HHeJ_G0032710.1 mouse_genomes_project 7 131013842 131019451 - Mvp protein_coding retained_intron MGP_C3HHeJ_T0084489.1 MGP_C3HHeJ_G0032180.1 mouse_genomes_project 7 89121842 89122864 + MGP_C3HHeJ_P0084489 Olfr297 protein_coding protein_coding MGP_C3HHeJ_T0083200.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546367 45552114 + MGP_C3HHeJ_P0083200 Fam71e1 protein_coding protein_coding MGP_C3HHeJ_T0083201.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546374 45551279 + Fam71e1 protein_coding retained_intron MGP_C3HHeJ_T0083202.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546385 45546935 + MGP_C3HHeJ_P0083202 Fam71e1 protein_coding protein_coding MGP_C3HHeJ_T0083203.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546444 45552107 + MGP_C3HHeJ_P0083203 Fam71e1 protein_coding protein_coding MGP_C3HHeJ_T0083204.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546454 45552107 + MGP_C3HHeJ_P0083204 Fam71e1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083205.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546458 45552460 + Fam71e1 protein_coding retained_intron MGP_C3HHeJ_T0083206.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546458 45547787 + Fam71e1 protein_coding retained_intron MGP_C3HHeJ_T0083207.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45546480 45551308 + Fam71e1 protein_coding retained_intron MGP_C3HHeJ_T0083208.1 MGP_C3HHeJ_G0031872.1 mouse_genomes_project 7 45551363 45552106 + Fam71e1 protein_coding processed_transcript MGP_C3HHeJ_T0082939.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35871113 35943225 - MGP_C3HHeJ_P0082939 Dpy19l3 protein_coding protein_coding MGP_C3HHeJ_T0082940.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35876673 35894041 - MGP_C3HHeJ_P0082940 Dpy19l3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082941.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35893172 35894514 - Dpy19l3 protein_coding retained_intron MGP_C3HHeJ_T0082942.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35893581 35894600 - Dpy19l3 protein_coding retained_intron MGP_C3HHeJ_T0082943.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35901179 35917616 - MGP_C3HHeJ_P0082943 Dpy19l3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082944.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35902987 35910565 - Dpy19l3 protein_coding retained_intron MGP_C3HHeJ_T0082945.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35906529 35912357 - Dpy19l3 protein_coding processed_transcript MGP_C3HHeJ_T0082946.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35912371 35917660 - Dpy19l3 protein_coding retained_intron MGP_C3HHeJ_T0082947.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35917561 35943170 - Dpy19l3 protein_coding processed_transcript MGP_C3HHeJ_T0082948.1 MGP_C3HHeJ_G0031799.1 mouse_genomes_project 7 35940094 35943126 - Dpy19l3 protein_coding retained_intron MGP_C3HHeJ_T0082305.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28026237 28040990 + MGP_C3HHeJ_P0082305 Hnrnpl protein_coding protein_coding MGP_C3HHeJ_T0082306.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28026502 28034605 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0082307.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28026504 28040973 + MGP_C3HHeJ_P0082307 Hnrnpl protein_coding protein_coding MGP_C3HHeJ_T0082308.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28027214 28032772 + MGP_C3HHeJ_P0082308 Hnrnpl protein_coding protein_coding MGP_C3HHeJ_T0082309.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28028539 28040990 + MGP_C3HHeJ_P0082309 Hnrnpl protein_coding protein_coding MGP_C3HHeJ_T0082310.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28028586 28040964 + MGP_C3HHeJ_P0082310 Hnrnpl protein_coding protein_coding MGP_C3HHeJ_T0082311.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28028589 28034581 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0082312.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28030997 28040973 + MGP_C3HHeJ_P0082312 Hnrnpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082313.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28031030 28032100 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0082314.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28032476 28036345 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0082315.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28032752 28039449 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0082316.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28035478 28036357 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0082317.1 MGP_C3HHeJ_G0031666.1 mouse_genomes_project 7 28039938 28040968 + Hnrnpl protein_coding retained_intron MGP_C3HHeJ_T0083472.1 MGP_C3HHeJ_G0031939.1 mouse_genomes_project 7 46751704 46754952 + MGP_C3HHeJ_P0083472 Fut1 protein_coding protein_coding MGP_C3HHeJ_T0081513.1 MGP_C3HHeJ_G0031448.1 mouse_genomes_project 7 17167005 17186341 + MGP_C3HHeJ_P0081513 Mill2 protein_coding protein_coding MGP_C3HHeJ_T0081514.1 MGP_C3HHeJ_G0031448.1 mouse_genomes_project 7 17167005 17186341 + MGP_C3HHeJ_P0081514 Mill2 protein_coding protein_coding MGP_C3HHeJ_T0081515.1 MGP_C3HHeJ_G0031448.1 mouse_genomes_project 7 17167028 17192109 + MGP_C3HHeJ_P0081515 Mill2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081516.1 MGP_C3HHeJ_G0031448.1 mouse_genomes_project 7 17167040 17183891 + Mill2 protein_coding processed_transcript MGP_C3HHeJ_T0086264.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130952772 130973918 + MGP_C3HHeJ_P0086264 Sez6l2 protein_coding protein_coding MGP_C3HHeJ_T0086265.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130952793 130961602 + MGP_C3HHeJ_P0086265 Sez6l2 protein_coding protein_coding MGP_C3HHeJ_T0086266.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130952938 130973908 + MGP_C3HHeJ_P0086266 Sez6l2 protein_coding protein_coding MGP_C3HHeJ_T0086267.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130953175 130973582 + MGP_C3HHeJ_P0086267 Sez6l2 protein_coding protein_coding MGP_C3HHeJ_T0086268.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130957289 130962768 + MGP_C3HHeJ_P0086268 Sez6l2 protein_coding protein_coding MGP_C3HHeJ_T0086269.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130971054 130973582 + Sez6l2 protein_coding retained_intron MGP_C3HHeJ_T0086270.1 MGP_C3HHeJ_G0032708.1 mouse_genomes_project 7 130971280 130973916 + MGP_C3HHeJ_P0086270 Sez6l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083320.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46099001 46111276 - Scaf1 protein_coding retained_intron MGP_C3HHeJ_T0083321.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46099001 46113666 - MGP_C3HHeJ_P0083321 Scaf1 protein_coding protein_coding MGP_C3HHeJ_T0083322.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46099001 46111707 - MGP_C3HHeJ_P0083322 Scaf1 protein_coding protein_coding MGP_C3HHeJ_T0083323.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46106231 46113434 - Scaf1 protein_coding processed_transcript MGP_C3HHeJ_T0083324.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46109460 46110864 - Scaf1 protein_coding retained_intron MGP_C3HHeJ_T0083325.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46110554 46113160 - MGP_C3HHeJ_P0083325 Scaf1 protein_coding protein_coding MGP_C3HHeJ_T0083326.1 MGP_C3HHeJ_G0031900.1 mouse_genomes_project 7 46111506 46112239 - Scaf1 protein_coding processed_transcript MGP_C3HHeJ_T0082007.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24649123 24688741 - MGP_C3HHeJ_P0082007 Axl protein_coding protein_coding MGP_C3HHeJ_T0082008.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24649480 24688759 - MGP_C3HHeJ_P0082008 Axl protein_coding protein_coding MGP_C3HHeJ_T0082009.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24652546 24655926 - Axl protein_coding retained_intron MGP_C3HHeJ_T0082010.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24653237 24656275 - Axl protein_coding retained_intron MGP_C3HHeJ_T0082011.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24655655 24688754 - Axl protein_coding retained_intron MGP_C3HHeJ_T0082012.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24658327 24666485 - MGP_C3HHeJ_P0082012 Axl protein_coding protein_coding MGP_C3HHeJ_T0082013.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24670400 24687125 - Axl protein_coding retained_intron MGP_C3HHeJ_T0082014.1 MGP_C3HHeJ_G0031584.1 mouse_genomes_project 7 24685997 24687631 - Axl protein_coding retained_intron MGP_C3HHeJ_T0085876.1 MGP_C3HHeJ_G0032646.1 mouse_genomes_project 7 125883122 125913610 - Ears2 protein_coding retained_intron MGP_C3HHeJ_T0085877.1 MGP_C3HHeJ_G0032646.1 mouse_genomes_project 7 125884730 125913669 - Ears2 protein_coding retained_intron MGP_C3HHeJ_T0085878.1 MGP_C3HHeJ_G0032646.1 mouse_genomes_project 7 125884730 125913862 - MGP_C3HHeJ_P0085878 Ears2 protein_coding protein_coding MGP_C3HHeJ_T0099590.1 MGP_C3HHeJ_G0037784.1 mouse_genomes_project 7 93963586 93963689 + Gm24552 snRNA snRNA MGP_C3HHeJ_T0015527.1 MGP_C3HHeJ_G0013631.1 mouse_genomes_project 7 15861385 15861852 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081805.1 MGP_C3HHeJ_G0031536.1 mouse_genomes_project 7 23229797 23238195 + MGP_C3HHeJ_P0081805 Zfp428 protein_coding protein_coding MGP_C3HHeJ_T0081806.1 MGP_C3HHeJ_G0031536.1 mouse_genomes_project 7 23229861 23238458 + MGP_C3HHeJ_P0081806 Zfp428 protein_coding protein_coding MGP_C3HHeJ_T0081807.1 MGP_C3HHeJ_G0031536.1 mouse_genomes_project 7 23229889 23237879 + MGP_C3HHeJ_P0081807 Zfp428 protein_coding protein_coding MGP_C3HHeJ_T0081808.1 MGP_C3HHeJ_G0031536.1 mouse_genomes_project 7 23229920 23238456 + MGP_C3HHeJ_P0081808 Zfp428 protein_coding protein_coding MGP_C3HHeJ_T0010794.1 MGP_C3HHeJ_G0008927.1 mouse_genomes_project 7 63456963 63457061 - Gm23917 miRNA miRNA MGP_C3HHeJ_T0082695.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30316303 30335336 - MGP_C3HHeJ_P0082695 Mag protein_coding protein_coding MGP_C3HHeJ_T0082696.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30316310 30334831 - MGP_C3HHeJ_P0082696 Mag protein_coding protein_coding MGP_C3HHeJ_T0082697.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30316658 30334812 - MGP_C3HHeJ_P0082697 Mag protein_coding protein_coding MGP_C3HHeJ_T0082698.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30316713 30334812 - MGP_C3HHeJ_P0082698 Mag protein_coding protein_coding MGP_C3HHeJ_T0082699.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30327426 30335377 - Mag protein_coding retained_intron MGP_C3HHeJ_T0082700.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30328955 30335369 - MGP_C3HHeJ_P0082700 Mag protein_coding protein_coding MGP_C3HHeJ_T0082701.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30331457 30335328 - MGP_C3HHeJ_P0082701 Mag protein_coding protein_coding MGP_C3HHeJ_T0082702.1 MGP_C3HHeJ_G0031753.1 mouse_genomes_project 7 30331834 30335349 - Mag protein_coding processed_transcript MGP_C3HHeJ_T0083427.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46606761 46646898 + MGP_C3HHeJ_P0083427 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083428.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46606762 46646351 + MGP_C3HHeJ_P0083428 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083429.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46606863 46646353 + MGP_C3HHeJ_P0083429 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083439.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46637681 46646565 + MGP_C3HHeJ_P0083439 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083440.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46637699 46646358 + MGP_C3HHeJ_P0083440 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083441.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46638556 46640663 + MGP_C3HHeJ_P0083441 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083442.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46638577 46646353 + MGP_C3HHeJ_P0083442 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083443.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46638581 46641918 + MGP_C3HHeJ_P0083443 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083444.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46638612 46647603 + MGP_C3HHeJ_P0083444 Tulp2 protein_coding protein_coding MGP_C3HHeJ_T0083445.1 MGP_C3HHeJ_G0031932.1 mouse_genomes_project 7 46639783 46640296 + Tulp2 protein_coding processed_transcript MGP_C3HHeJ_T0082339.1 MGP_C3HHeJ_G0031672.1 mouse_genomes_project 7 28234161 28244110 - MGP_C3HHeJ_P0082339 Eif3k protein_coding protein_coding MGP_C3HHeJ_T0002189.1 MGP_C3HHeJ_G0002110.1 mouse_genomes_project 7 47549684 47550200 + TEC TEC MGP_C3HHeJ_T0086763.1 MGP_C3HHeJ_G0032810.1 mouse_genomes_project 7 136908274 136913034 - MGP_C3HHeJ_P0086763 Nkx1-2 protein_coding protein_coding MGP_C3HHeJ_T0082190.1 MGP_C3HHeJ_G0031631.1 mouse_genomes_project 7 26992447 27014116 + MGP_C3HHeJ_P0082190 Zfp607a protein_coding protein_coding MGP_C3HHeJ_T0081370.1 MGP_C3HHeJ_G0031401.1 mouse_genomes_project 7 14067487 14098146 + MGP_C3HHeJ_P0081370 Slc8a2 protein_coding protein_coding MGP_C3HHeJ_T0084433.1 MGP_C3HHeJ_G0032152.1 mouse_genomes_project 7 86104678 86112484 - MGP_C3HHeJ_P0084433 protein_coding protein_coding MGP_C3HHeJ_T0018183.1 MGP_C3HHeJ_G0015447.1 mouse_genomes_project 7 119691959 119701135 - 1700003G18Rik processed_transcript sense_overlapping MGP_C3HHeJ_T0018184.1 MGP_C3HHeJ_G0015447.1 mouse_genomes_project 7 119692098 119701082 - 1700003G18Rik processed_transcript sense_overlapping MGP_C3HHeJ_T0018185.1 MGP_C3HHeJ_G0015447.1 mouse_genomes_project 7 119699872 119701074 - 1700003G18Rik processed_transcript retained_intron MGP_C3HHeJ_T0081283.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10905312 10926082 - MGP_C3HHeJ_P0081283 6330408A02Rik protein_coding protein_coding MGP_C3HHeJ_T0081284.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10905312 10925543 - MGP_C3HHeJ_P0081284 6330408A02Rik protein_coding protein_coding MGP_C3HHeJ_T0081285.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10905313 10926120 - MGP_C3HHeJ_P0081285 6330408A02Rik protein_coding protein_coding MGP_C3HHeJ_T0081286.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10912079 10926120 - 6330408A02Rik protein_coding retained_intron MGP_C3HHeJ_T0081287.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10920644 10926069 - 6330408A02Rik protein_coding retained_intron MGP_C3HHeJ_T0081288.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10920753 10925821 - 6330408A02Rik protein_coding retained_intron MGP_C3HHeJ_T0081289.1 MGP_C3HHeJ_G0031370.1 mouse_genomes_project 7 10924678 10926061 - MGP_C3HHeJ_P0081289 6330408A02Rik protein_coding protein_coding MGP_C3HHeJ_T0018109.1 MGP_C3HHeJ_G0015417.1 mouse_genomes_project 7 26319553 26330096 + Gm44641 processed_transcript processed_transcript MGP_C3HHeJ_T0008728.1 MGP_C3HHeJ_G0007042.1 mouse_genomes_project 7 17988293 17994022 - Gm26890 lincRNA lincRNA MGP_C3HHeJ_T0084213.1 MGP_C3HHeJ_G0032109.1 mouse_genomes_project 7 82659809 82669535 + MGP_C3HHeJ_P0084213 Gdpgp1 protein_coding protein_coding MGP_C3HHeJ_T0008955.1 MGP_C3HHeJ_G0007200.1 mouse_genomes_project 7 132933013 133081827 + Gm44671 lincRNA lincRNA MGP_C3HHeJ_T0008795.1 MGP_C3HHeJ_G0007097.1 mouse_genomes_project 7 65878518 65909882 + lincRNA lincRNA MGP_C3HHeJ_T0008796.1 MGP_C3HHeJ_G0007097.1 mouse_genomes_project 7 65892200 65909852 + lincRNA lincRNA MGP_C3HHeJ_T0101469.1 MGP_C3HHeJ_G0039474.1 mouse_genomes_project 7 14637229 14645455 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101470.1 MGP_C3HHeJ_G0039474.1 mouse_genomes_project 7 14637587 14640062 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0015589.1 MGP_C3HHeJ_G0013693.1 mouse_genomes_project 7 42390167 42390817 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085815.1 MGP_C3HHeJ_G0032628.1 mouse_genomes_project 7 124394841 124419893 + MGP_C3HHeJ_P0085815 Uqcrc2 protein_coding protein_coding MGP_C3HHeJ_T0085816.1 MGP_C3HHeJ_G0032628.1 mouse_genomes_project 7 124394905 124402883 + Uqcrc2 protein_coding processed_transcript MGP_C3HHeJ_T0085817.1 MGP_C3HHeJ_G0032628.1 mouse_genomes_project 7 124395180 124404908 + Uqcrc2 protein_coding processed_transcript MGP_C3HHeJ_T0085818.1 MGP_C3HHeJ_G0032628.1 mouse_genomes_project 7 124397327 124419576 + Uqcrc2 protein_coding processed_transcript MGP_C3HHeJ_T0085819.1 MGP_C3HHeJ_G0032628.1 mouse_genomes_project 7 124404583 124410596 + Uqcrc2 protein_coding retained_intron MGP_C3HHeJ_T0085820.1 MGP_C3HHeJ_G0032628.1 mouse_genomes_project 7 124410945 124417525 + Uqcrc2 protein_coding retained_intron MGP_C3HHeJ_T0085106.1 MGP_C3HHeJ_G0032374.1 mouse_genomes_project 7 107057632 107059227 - MGP_C3HHeJ_P0085106 Olfr69 protein_coding protein_coding MGP_C3HHeJ_T0083659.1 MGP_C3HHeJ_G0031995.1 mouse_genomes_project 7 49903423 49923018 - MGP_C3HHeJ_P0083659 Mrgprx2 protein_coding protein_coding MGP_C3HHeJ_T0083660.1 MGP_C3HHeJ_G0031995.1 mouse_genomes_project 7 49905430 49919822 - MGP_C3HHeJ_P0083660 Mrgprx2 protein_coding protein_coding MGP_C3HHeJ_T0081741.1 MGP_C3HHeJ_G0031520.1 mouse_genomes_project 7 22771002 22800496 + MGP_C3HHeJ_P0081741 Zfp180 protein_coding protein_coding MGP_C3HHeJ_T0081742.1 MGP_C3HHeJ_G0031520.1 mouse_genomes_project 7 22771093 22797353 + MGP_C3HHeJ_P0081742 Zfp180 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081743.1 MGP_C3HHeJ_G0031520.1 mouse_genomes_project 7 22789974 22794378 + Zfp180 protein_coding retained_intron MGP_C3HHeJ_T0087415.1 MGP_C3HHeJ_G0032969.1 mouse_genomes_project 7 147864370 147866215 + MGP_C3HHeJ_P0087415 Tssc4 protein_coding protein_coding MGP_C3HHeJ_T0087416.1 MGP_C3HHeJ_G0032969.1 mouse_genomes_project 7 147864462 147865668 + MGP_C3HHeJ_P0087416 Tssc4 protein_coding protein_coding MGP_C3HHeJ_T0087417.1 MGP_C3HHeJ_G0032969.1 mouse_genomes_project 7 147864489 147866209 + MGP_C3HHeJ_P0087417 Tssc4 protein_coding protein_coding MGP_C3HHeJ_T0087418.1 MGP_C3HHeJ_G0032969.1 mouse_genomes_project 7 147864489 147866209 + MGP_C3HHeJ_P0087418 Tssc4 protein_coding protein_coding MGP_C3HHeJ_T0087419.1 MGP_C3HHeJ_G0032969.1 mouse_genomes_project 7 147864545 147865667 + MGP_C3HHeJ_P0087419 Tssc4 protein_coding protein_coding MGP_C3HHeJ_T0087420.1 MGP_C3HHeJ_G0032969.1 mouse_genomes_project 7 147864665 147865731 + MGP_C3HHeJ_P0087420 Tssc4 protein_coding protein_coding MGP_C3HHeJ_T0086865.1 MGP_C3HHeJ_G0032831.1 mouse_genomes_project 7 139966541 139985951 - MGP_C3HHeJ_P0086865 Clrn3 protein_coding protein_coding MGP_C3HHeJ_T0080980.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1462278 1473307 - MGP_C3HHeJ_P0080980 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080981.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1462278 1473278 - MGP_C3HHeJ_P0080981 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080982.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1462371 1473262 - MGP_C3HHeJ_P0080982 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080983.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1462371 1473278 - MGP_C3HHeJ_P0080983 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080984.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1462463 1471671 - MGP_C3HHeJ_P0080984 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080985.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1462492 1467247 - Tnnt1 protein_coding retained_intron MGP_C3HHeJ_T0080986.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1465066 1473264 - MGP_C3HHeJ_P0080986 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080987.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1465098 1467107 - Tnnt1 protein_coding retained_intron MGP_C3HHeJ_T0080988.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1465818 1471918 - MGP_C3HHeJ_P0080988 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080989.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1465886 1471877 - MGP_C3HHeJ_P0080989 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080990.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1466918 1473685 - MGP_C3HHeJ_P0080990 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0080991.1 MGP_C3HHeJ_G0031250.1 mouse_genomes_project 7 1471131 1472410 - MGP_C3HHeJ_P0080991 Tnnt1 protein_coding protein_coding MGP_C3HHeJ_T0081748.1 MGP_C3HHeJ_G0031522.1 mouse_genomes_project 7 22827445 22829728 + Zfp235 protein_coding retained_intron MGP_C3HHeJ_T0081749.1 MGP_C3HHeJ_G0031522.1 mouse_genomes_project 7 22827450 22830531 + Zfp235 protein_coding processed_transcript MGP_C3HHeJ_T0081750.1 MGP_C3HHeJ_G0031522.1 mouse_genomes_project 7 22827472 22835687 + MGP_C3HHeJ_P0081750 Zfp235 protein_coding protein_coding MGP_C3HHeJ_T0081751.1 MGP_C3HHeJ_G0031522.1 mouse_genomes_project 7 22827504 22830535 + Zfp235 protein_coding processed_transcript MGP_C3HHeJ_T0081752.1 MGP_C3HHeJ_G0031522.1 mouse_genomes_project 7 22827518 22838005 + MGP_C3HHeJ_P0081752 Zfp235 protein_coding protein_coding MGP_C3HHeJ_T0099615.1 MGP_C3HHeJ_G0037809.1 mouse_genomes_project 7 132152532 132152688 - Gm22809 snRNA snRNA MGP_C3HHeJ_T0085743.1 MGP_C3HHeJ_G0032606.1 mouse_genomes_project 7 122854602 122894544 - MGP_C3HHeJ_P0085743 Gpr139 protein_coding protein_coding MGP_C3HHeJ_T0100844.1 MGP_C3HHeJ_G0039038.1 mouse_genomes_project 7 101883346 101883468 + Gm23479 snoRNA snoRNA MGP_C3HHeJ_T0081690.1 MGP_C3HHeJ_G0031496.1 mouse_genomes_project 7 18097121 18112284 - MGP_C3HHeJ_P0081690 Tomm40 protein_coding protein_coding MGP_C3HHeJ_T0081691.1 MGP_C3HHeJ_G0031496.1 mouse_genomes_project 7 18097139 18112271 - MGP_C3HHeJ_P0081691 Tomm40 protein_coding protein_coding MGP_C3HHeJ_T0081692.1 MGP_C3HHeJ_G0031496.1 mouse_genomes_project 7 18097630 18107762 - Tomm40 protein_coding retained_intron MGP_C3HHeJ_T0081693.1 MGP_C3HHeJ_G0031496.1 mouse_genomes_project 7 18098677 18099153 - MGP_C3HHeJ_P0081693 Tomm40 protein_coding protein_coding MGP_C3HHeJ_T0081694.1 MGP_C3HHeJ_G0031496.1 mouse_genomes_project 7 18108249 18112274 - Tomm40 protein_coding retained_intron MGP_C3HHeJ_T0085202.1 MGP_C3HHeJ_G0032439.1 mouse_genomes_project 7 108555478 108556481 + MGP_C3HHeJ_P0085202 protein_coding protein_coding MGP_C3HHeJ_T0082399.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28612039 28670256 - MGP_C3HHeJ_P0082399 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082400.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28612045 28647044 - Sipa1l3 protein_coding retained_intron MGP_C3HHeJ_T0082401.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28612045 28808844 - MGP_C3HHeJ_P0082401 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082402.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28612045 28808844 - MGP_C3HHeJ_P0082402 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082403.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28613001 28646966 - Sipa1l3 protein_coding retained_intron MGP_C3HHeJ_T0082404.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28613494 28620544 - MGP_C3HHeJ_P0082404 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082405.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28613789 28660474 - MGP_C3HHeJ_P0082405 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082406.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28615093 28633470 - Sipa1l3 protein_coding retained_intron MGP_C3HHeJ_T0082407.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28622659 28630664 - Sipa1l3 protein_coding retained_intron MGP_C3HHeJ_T0082408.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28658239 28659947 - Sipa1l3 protein_coding retained_intron MGP_C3HHeJ_T0082409.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28659359 28660482 - MGP_C3HHeJ_P0082409 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082410.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28663438 28670396 - Sipa1l3 protein_coding retained_intron MGP_C3HHeJ_T0082411.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28676906 28808836 - Sipa1l3 protein_coding processed_transcript MGP_C3HHeJ_T0082412.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28694758 28823179 - MGP_C3HHeJ_P0082412 Sipa1l3 protein_coding protein_coding MGP_C3HHeJ_T0082413.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28694863 28823208 - Sipa1l3 protein_coding processed_transcript MGP_C3HHeJ_T0082414.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28694936 28823182 - Sipa1l3 protein_coding processed_transcript MGP_C3HHeJ_T0082415.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28793841 28823127 - Sipa1l3 protein_coding processed_transcript MGP_C3HHeJ_T0082416.1 MGP_C3HHeJ_G0031687.1 mouse_genomes_project 7 28821337 28823122 - Sipa1l3 protein_coding processed_transcript MGP_C3HHeJ_T0086590.1 MGP_C3HHeJ_G0032776.1 mouse_genomes_project 7 132354762 132359236 + MGP_C3HHeJ_P0086590 Tgfb1i1 protein_coding protein_coding MGP_C3HHeJ_T0081678.1 MGP_C3HHeJ_G0031494.1 mouse_genomes_project 7 18085242 18088381 - MGP_C3HHeJ_P0081678 Apoc1 protein_coding protein_coding MGP_C3HHeJ_T0081679.1 MGP_C3HHeJ_G0031494.1 mouse_genomes_project 7 18085242 18088443 - MGP_C3HHeJ_P0081679 Apoc1 protein_coding protein_coding MGP_C3HHeJ_T0102254.1 MGP_C3HHeJ_G0040217.1 mouse_genomes_project 7 49467953 49468917 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085105.1 MGP_C3HHeJ_G0032373.1 mouse_genomes_project 7 107042010 107059166 - MGP_C3HHeJ_P0085105 Olfr68 protein_coding protein_coding MGP_C3HHeJ_T0015713.1 MGP_C3HHeJ_G0013817.1 mouse_genomes_project 7 130115845 130116256 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081894.1 MGP_C3HHeJ_G0031558.1 mouse_genomes_project 7 23872256 23876698 + Zfp574 protein_coding processed_transcript MGP_C3HHeJ_T0081895.1 MGP_C3HHeJ_G0031558.1 mouse_genomes_project 7 23872335 23877057 + Zfp574 protein_coding processed_transcript MGP_C3HHeJ_T0081896.1 MGP_C3HHeJ_G0031558.1 mouse_genomes_project 7 23876886 23883174 + MGP_C3HHeJ_P0081896 Zfp574 protein_coding protein_coding MGP_C3HHeJ_T0081897.1 MGP_C3HHeJ_G0031558.1 mouse_genomes_project 7 23876965 23882162 + MGP_C3HHeJ_P0081897 Zfp574 protein_coding protein_coding MGP_C3HHeJ_T0085082.1 MGP_C3HHeJ_G0032350.1 mouse_genomes_project 7 106554904 106555843 + MGP_C3HHeJ_P0085082 Olfr603 protein_coding protein_coding MGP_C3HHeJ_T0099574.1 MGP_C3HHeJ_G0037768.1 mouse_genomes_project 7 46355342 46355444 - Gm23585 snRNA snRNA MGP_C3HHeJ_T0085659.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 119962278 120063860 - MGP_C3HHeJ_P0085659 Pik3c2a protein_coding protein_coding MGP_C3HHeJ_T0085660.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 119962289 119965643 - Pik3c2a protein_coding retained_intron MGP_C3HHeJ_T0085661.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 119964618 119994336 - MGP_C3HHeJ_P0085661 Pik3c2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085662.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 119964740 120063860 - MGP_C3HHeJ_P0085662 Pik3c2a protein_coding protein_coding MGP_C3HHeJ_T0085663.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 119966919 119967660 - Pik3c2a protein_coding retained_intron MGP_C3HHeJ_T0085664.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 120013459 120063858 - MGP_C3HHeJ_P0085664 Pik3c2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085665.1 MGP_C3HHeJ_G0032589.1 mouse_genomes_project 7 120014451 120063850 - Pik3c2a protein_coding retained_intron MGP_C3HHeJ_T0082421.1 MGP_C3HHeJ_G0031690.1 mouse_genomes_project 7 29129386 29140079 + MGP_C3HHeJ_P0082421 Zfp30 protein_coding protein_coding MGP_C3HHeJ_T0082422.1 MGP_C3HHeJ_G0031690.1 mouse_genomes_project 7 29129411 29137290 + Zfp30 protein_coding retained_intron MGP_C3HHeJ_T0082423.1 MGP_C3HHeJ_G0031690.1 mouse_genomes_project 7 29131628 29140086 + MGP_C3HHeJ_P0082423 Zfp30 protein_coding protein_coding MGP_C3HHeJ_T0002242.1 MGP_C3HHeJ_G0002162.1 mouse_genomes_project 7 82321048 82323246 - TEC TEC MGP_C3HHeJ_T0085841.1 MGP_C3HHeJ_G0032633.1 mouse_genomes_project 7 124704671 124736270 + MGP_C3HHeJ_P0085841 Polr3e protein_coding protein_coding MGP_C3HHeJ_T0085842.1 MGP_C3HHeJ_G0032633.1 mouse_genomes_project 7 124704671 124736270 + MGP_C3HHeJ_P0085842 Polr3e protein_coding protein_coding MGP_C3HHeJ_T0099622.1 MGP_C3HHeJ_G0037816.1 mouse_genomes_project 7 146773019 146773126 - Gm25416 snRNA snRNA MGP_C3HHeJ_T0084390.1 MGP_C3HHeJ_G0032141.1 mouse_genomes_project 7 84303468 84313918 - MGP_C3HHeJ_P0084390 3110040N11Rik protein_coding protein_coding MGP_C3HHeJ_T0084391.1 MGP_C3HHeJ_G0032141.1 mouse_genomes_project 7 84306212 84313941 - 3110040N11Rik protein_coding processed_transcript MGP_C3HHeJ_T0084392.1 MGP_C3HHeJ_G0032141.1 mouse_genomes_project 7 84306212 84313136 - 3110040N11Rik protein_coding processed_transcript MGP_C3HHeJ_T0084393.1 MGP_C3HHeJ_G0032141.1 mouse_genomes_project 7 84306231 84313581 - 3110040N11Rik protein_coding processed_transcript MGP_C3HHeJ_T0084394.1 MGP_C3HHeJ_G0032141.1 mouse_genomes_project 7 84306285 84313937 - MGP_C3HHeJ_P0084394 3110040N11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086048.1 MGP_C3HHeJ_G0032675.1 mouse_genomes_project 7 130342482 130356964 - MGP_C3HHeJ_P0086048 Nfatc2ip protein_coding protein_coding MGP_C3HHeJ_T0086049.1 MGP_C3HHeJ_G0032675.1 mouse_genomes_project 7 130344505 130350802 - MGP_C3HHeJ_P0086049 Nfatc2ip protein_coding protein_coding MGP_C3HHeJ_T0081380.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14137247 14144672 - Dhx34 protein_coding retained_intron MGP_C3HHeJ_T0081381.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14137247 14162544 - MGP_C3HHeJ_P0081381 Dhx34 protein_coding protein_coding MGP_C3HHeJ_T0081382.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14137321 14162539 - MGP_C3HHeJ_P0081382 Dhx34 protein_coding protein_coding MGP_C3HHeJ_T0081383.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14137321 14162500 - MGP_C3HHeJ_P0081383 Dhx34 protein_coding protein_coding MGP_C3HHeJ_T0081384.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14137321 14162500 - MGP_C3HHeJ_P0081384 Dhx34 protein_coding protein_coding MGP_C3HHeJ_T0081385.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14137324 14162500 - MGP_C3HHeJ_P0081385 Dhx34 protein_coding protein_coding MGP_C3HHeJ_T0081386.1 MGP_C3HHeJ_G0031403.1 mouse_genomes_project 7 14146458 14153899 - Dhx34 protein_coding processed_transcript MGP_C3HHeJ_T0083787.1 MGP_C3HHeJ_G0032023.1 mouse_genomes_project 7 59016806 59120790 - MGP_C3HHeJ_P0083787 Gabra5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084450.1 MGP_C3HHeJ_G0032156.1 mouse_genomes_project 7 86315986 86316789 + MGP_C3HHeJ_P0084450 protein_coding protein_coding MGP_C3HHeJ_T0100828.1 MGP_C3HHeJ_G0039022.1 mouse_genomes_project 7 60917547 60917626 - Gm24966 snoRNA snoRNA MGP_C3HHeJ_T0085697.1 MGP_C3HHeJ_G0032597.1 mouse_genomes_project 7 122191610 122215267 - MGP_C3HHeJ_P0085697 Coq7 protein_coding protein_coding MGP_C3HHeJ_T0085698.1 MGP_C3HHeJ_G0032597.1 mouse_genomes_project 7 122206981 122215322 - MGP_C3HHeJ_P0085698 Coq7 protein_coding protein_coding MGP_C3HHeJ_T0085699.1 MGP_C3HHeJ_G0032597.1 mouse_genomes_project 7 122208728 122215280 - Coq7 protein_coding retained_intron MGP_C3HHeJ_T0018125.1 MGP_C3HHeJ_G0015427.1 mouse_genomes_project 7 46081547 46087224 + Gm15545 processed_transcript processed_transcript MGP_C3HHeJ_T0018126.1 MGP_C3HHeJ_G0015427.1 mouse_genomes_project 7 46081574 46090744 + Gm15545 processed_transcript processed_transcript MGP_C3HHeJ_T0018127.1 MGP_C3HHeJ_G0015427.1 mouse_genomes_project 7 46081581 46086413 + Gm15545 processed_transcript processed_transcript MGP_C3HHeJ_T0018128.1 MGP_C3HHeJ_G0015427.1 mouse_genomes_project 7 46081620 46088473 + Gm15545 processed_transcript processed_transcript MGP_C3HHeJ_T0087045.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145511933 145530241 + MGP_C3HHeJ_P0087045 Psmd13 protein_coding protein_coding MGP_C3HHeJ_T0087046.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512379 145529511 + Psmd13 protein_coding retained_intron MGP_C3HHeJ_T0087047.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512394 145517231 + Psmd13 protein_coding processed_transcript MGP_C3HHeJ_T0087048.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512403 145516829 + Psmd13 protein_coding processed_transcript MGP_C3HHeJ_T0087049.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512417 145519685 + Psmd13 protein_coding processed_transcript MGP_C3HHeJ_T0087050.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512432 145517144 + Psmd13 protein_coding retained_intron MGP_C3HHeJ_T0087051.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512437 145529832 + MGP_C3HHeJ_P0087051 Psmd13 protein_coding protein_coding MGP_C3HHeJ_T0087052.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512437 145529887 + MGP_C3HHeJ_P0087052 Psmd13 protein_coding protein_coding MGP_C3HHeJ_T0087053.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145512437 145529887 + MGP_C3HHeJ_P0087053 Psmd13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087054.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145513465 145516397 + Psmd13 protein_coding processed_transcript MGP_C3HHeJ_T0087055.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145519365 145529994 + MGP_C3HHeJ_P0087055 Psmd13 protein_coding protein_coding MGP_C3HHeJ_T0087056.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145520354 145529439 + Psmd13 protein_coding retained_intron MGP_C3HHeJ_T0087057.1 MGP_C3HHeJ_G0032895.1 mouse_genomes_project 7 145526194 145530242 + MGP_C3HHeJ_P0087057 Psmd13 protein_coding protein_coding MGP_C3HHeJ_T0100836.1 MGP_C3HHeJ_G0039030.1 mouse_genomes_project 7 69527239 69527376 - Gm23233 snoRNA snoRNA MGP_C3HHeJ_T0085908.1 MGP_C3HHeJ_G0032652.1 mouse_genomes_project 7 126020711 126037008 - MGP_C3HHeJ_P0085908 Ern2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085909.1 MGP_C3HHeJ_G0032652.1 mouse_genomes_project 7 126020758 126037005 - MGP_C3HHeJ_P0085909 Ern2 protein_coding protein_coding MGP_C3HHeJ_T0085910.1 MGP_C3HHeJ_G0032652.1 mouse_genomes_project 7 126020882 126034756 - MGP_C3HHeJ_P0085910 Ern2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0008787.1 MGP_C3HHeJ_G0007090.1 mouse_genomes_project 7 45533619 45534498 + Gm45123 lincRNA lincRNA MGP_C3HHeJ_T0008877.1 MGP_C3HHeJ_G0007150.1 mouse_genomes_project 7 87126056 87174073 + lincRNA lincRNA MGP_C3HHeJ_T0081856.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687236 23709727 + MGP_C3HHeJ_P0081856 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081857.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687361 23709724 + MGP_C3HHeJ_P0081857 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081858.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687375 23709724 + MGP_C3HHeJ_P0081858 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081859.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687380 23709729 + MGP_C3HHeJ_P0081859 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081860.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687389 23688709 + Arhgef1 protein_coding processed_transcript MGP_C3HHeJ_T0081861.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687395 23692213 + MGP_C3HHeJ_P0081861 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081862.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23687399 23694281 + Arhgef1 protein_coding retained_intron MGP_C3HHeJ_T0081863.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23688680 23699025 + MGP_C3HHeJ_P0081863 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081864.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23688682 23709724 + Arhgef1 protein_coding retained_intron MGP_C3HHeJ_T0081865.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23688729 23698174 + MGP_C3HHeJ_P0081865 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081866.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23688731 23709727 + MGP_C3HHeJ_P0081866 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081867.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23688764 23706226 + MGP_C3HHeJ_P0081867 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081868.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23691967 23697714 + MGP_C3HHeJ_P0081868 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081869.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23698190 23701614 + Arhgef1 protein_coding retained_intron MGP_C3HHeJ_T0081870.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23700052 23709241 + MGP_C3HHeJ_P0081870 Arhgef1 protein_coding protein_coding MGP_C3HHeJ_T0081871.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23702423 23705514 + Arhgef1 protein_coding retained_intron MGP_C3HHeJ_T0081872.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23706382 23707982 + Arhgef1 protein_coding retained_intron MGP_C3HHeJ_T0081873.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23706487 23708620 + Arhgef1 protein_coding retained_intron MGP_C3HHeJ_T0081874.1 MGP_C3HHeJ_G0031553.1 mouse_genomes_project 7 23706497 23709071 + Arhgef1 protein_coding processed_transcript MGP_C3HHeJ_T0010760.1 MGP_C3HHeJ_G0008893.1 mouse_genomes_project 7 24729381 24729477 - Gm24865 miRNA miRNA MGP_C3HHeJ_T0083564.1 MGP_C3HHeJ_G0031965.1 mouse_genomes_project 7 47283599 47284772 - MGP_C3HHeJ_P0083564 Kcnj11 protein_coding protein_coding MGP_C3HHeJ_T0086134.1 MGP_C3HHeJ_G0032690.1 mouse_genomes_project 7 130675790 130684636 - MGP_C3HHeJ_P0086134 Slx1b protein_coding protein_coding MGP_C3HHeJ_T0086135.1 MGP_C3HHeJ_G0032690.1 mouse_genomes_project 7 130679484 130684491 - Slx1b protein_coding retained_intron MGP_C3HHeJ_T0086136.1 MGP_C3HHeJ_G0032690.1 mouse_genomes_project 7 130679924 130684597 - Slx1b protein_coding retained_intron MGP_C3HHeJ_T0086137.1 MGP_C3HHeJ_G0032690.1 mouse_genomes_project 7 130679924 130684576 - MGP_C3HHeJ_P0086137 Slx1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098175.1 MGP_C3HHeJ_G0036387.1 mouse_genomes_project 7 35249232 35249351 + Gm22535 rRNA rRNA MGP_C3HHeJ_T0015670.1 MGP_C3HHeJ_G0013774.1 mouse_genomes_project 7 98791384 98792611 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100811.1 MGP_C3HHeJ_G0039005.1 mouse_genomes_project 7 13864766 13864875 - Snord23 snoRNA snoRNA MGP_C3HHeJ_T0010821.1 MGP_C3HHeJ_G0008954.1 mouse_genomes_project 7 104602316 104602384 + Mir139 miRNA miRNA MGP_C3HHeJ_T0083117.1 MGP_C3HHeJ_G0031852.1 mouse_genomes_project 7 44868443 44871824 + MGP_C3HHeJ_P0083117 Klk5 protein_coding protein_coding MGP_C3HHeJ_T0083118.1 MGP_C3HHeJ_G0031852.1 mouse_genomes_project 7 44868741 44878922 + MGP_C3HHeJ_P0083118 Klk5 protein_coding protein_coding MGP_C3HHeJ_T0081184.1 MGP_C3HHeJ_G0031327.1 mouse_genomes_project 7 7739132 7747298 - MGP_C3HHeJ_P0081184 Zik1 protein_coding protein_coding MGP_C3HHeJ_T0083010.1 MGP_C3HHeJ_G0031815.1 mouse_genomes_project 7 42295081 42330578 + MGP_C3HHeJ_P0083010 protein_coding protein_coding MGP_C3HHeJ_T0083011.1 MGP_C3HHeJ_G0031815.1 mouse_genomes_project 7 42301545 42312743 + MGP_C3HHeJ_P0083011 protein_coding protein_coding MGP_C3HHeJ_T0083012.1 MGP_C3HHeJ_G0031815.1 mouse_genomes_project 7 42311530 42312766 + protein_coding retained_intron MGP_C3HHeJ_T0084179.1 MGP_C3HHeJ_G0032099.1 mouse_genomes_project 7 82128821 82174122 + MGP_C3HHeJ_P0084179 Wdr93 protein_coding protein_coding MGP_C3HHeJ_T0005198.1 MGP_C3HHeJ_G0004406.1 mouse_genomes_project 7 116054643 116063356 - Parvaos antisense antisense MGP_C3HHeJ_T0010817.1 MGP_C3HHeJ_G0008950.1 mouse_genomes_project 7 99129249 99129358 + Mir708 miRNA miRNA MGP_C3HHeJ_T0081183.1 MGP_C3HHeJ_G0031326.1 mouse_genomes_project 7 7702929 7703925 + MGP_C3HHeJ_P0081183 Vmn1r67 protein_coding protein_coding MGP_C3HHeJ_T0085372.1 MGP_C3HHeJ_G0032513.1 mouse_genomes_project 7 111673960 111674905 - MGP_C3HHeJ_P0085372 protein_coding protein_coding MGP_C3HHeJ_T0081168.1 MGP_C3HHeJ_G0031317.1 mouse_genomes_project 7 3780249 3806782 - MGP_C3HHeJ_P0081168 Peg3 protein_coding protein_coding MGP_C3HHeJ_T0081169.1 MGP_C3HHeJ_G0031317.1 mouse_genomes_project 7 3785753 3806780 - MGP_C3HHeJ_P0081169 Peg3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081170.1 MGP_C3HHeJ_G0031317.1 mouse_genomes_project 7 3788054 3799576 - MGP_C3HHeJ_P0081170 Peg3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081171.1 MGP_C3HHeJ_G0031317.1 mouse_genomes_project 7 3798293 3806780 - Peg3 protein_coding retained_intron MGP_C3HHeJ_T0085324.1 MGP_C3HHeJ_G0032472.1 mouse_genomes_project 7 110161527 110164784 - MGP_C3HHeJ_P0085324 Olfr702 protein_coding protein_coding MGP_C3HHeJ_T0085525.1 MGP_C3HHeJ_G0032564.1 mouse_genomes_project 7 115518023 115617962 + MGP_C3HHeJ_P0085525 Usp47 protein_coding protein_coding MGP_C3HHeJ_T0085526.1 MGP_C3HHeJ_G0032564.1 mouse_genomes_project 7 115518225 115617907 + MGP_C3HHeJ_P0085526 Usp47 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086987.1 MGP_C3HHeJ_G0032863.1 mouse_genomes_project 7 144736570 144749999 + MGP_C3HHeJ_P0086987 Mtg1 protein_coding protein_coding MGP_C3HHeJ_T0086988.1 MGP_C3HHeJ_G0032863.1 mouse_genomes_project 7 144736655 144741559 + Mtg1 protein_coding retained_intron MGP_C3HHeJ_T0086989.1 MGP_C3HHeJ_G0032863.1 mouse_genomes_project 7 144736669 144746686 + Mtg1 protein_coding retained_intron MGP_C3HHeJ_T0086990.1 MGP_C3HHeJ_G0032863.1 mouse_genomes_project 7 144736969 144737403 + Mtg1 protein_coding processed_transcript MGP_C3HHeJ_T0086991.1 MGP_C3HHeJ_G0032863.1 mouse_genomes_project 7 144739641 144746374 + Mtg1 protein_coding retained_intron MGP_C3HHeJ_T0086992.1 MGP_C3HHeJ_G0032863.1 mouse_genomes_project 7 144748171 144749660 + Mtg1 protein_coding processed_transcript MGP_C3HHeJ_T0015528.1 MGP_C3HHeJ_G0013632.1 mouse_genomes_project 7 15981453 15981945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087059.1 MGP_C3HHeJ_G0032897.1 mouse_genomes_project 7 145552500 145560139 + MGP_C3HHeJ_P0087059 Nlrp6 protein_coding protein_coding MGP_C3HHeJ_T0087060.1 MGP_C3HHeJ_G0032897.1 mouse_genomes_project 7 145552500 145560791 + MGP_C3HHeJ_P0087060 Nlrp6 protein_coding protein_coding MGP_C3HHeJ_T0087061.1 MGP_C3HHeJ_G0032897.1 mouse_genomes_project 7 145552669 145559148 + MGP_C3HHeJ_P0087061 Nlrp6 protein_coding protein_coding MGP_C3HHeJ_T0087062.1 MGP_C3HHeJ_G0032897.1 mouse_genomes_project 7 145553704 145554454 + Nlrp6 protein_coding retained_intron MGP_C3HHeJ_T0084741.1 MGP_C3HHeJ_G0032247.1 mouse_genomes_project 7 102241716 102308944 + MGP_C3HHeJ_P0084741 Map6 protein_coding protein_coding MGP_C3HHeJ_T0084742.1 MGP_C3HHeJ_G0032247.1 mouse_genomes_project 7 102241716 102308944 + MGP_C3HHeJ_P0084742 Map6 protein_coding protein_coding MGP_C3HHeJ_T0084743.1 MGP_C3HHeJ_G0032247.1 mouse_genomes_project 7 102241758 102292411 + Map6 protein_coding retained_intron MGP_C3HHeJ_T0084744.1 MGP_C3HHeJ_G0032247.1 mouse_genomes_project 7 102242615 102308945 + MGP_C3HHeJ_P0084744 Map6 protein_coding protein_coding MGP_C3HHeJ_T0084745.1 MGP_C3HHeJ_G0032247.1 mouse_genomes_project 7 102293254 102294510 + Map6 protein_coding processed_transcript MGP_C3HHeJ_T0018171.1 MGP_C3HHeJ_G0015440.1 mouse_genomes_project 7 83544622 83551761 + Platr32 processed_transcript processed_transcript MGP_C3HHeJ_T0086282.1 MGP_C3HHeJ_G0032713.1 mouse_genomes_project 7 131020794 131023096 - MGP_C3HHeJ_P0086282 protein_coding protein_coding MGP_C3HHeJ_T0086283.1 MGP_C3HHeJ_G0032713.1 mouse_genomes_project 7 131020808 131026071 - protein_coding retained_intron MGP_C3HHeJ_T0086287.1 MGP_C3HHeJ_G0032713.1 mouse_genomes_project 7 131021974 131026841 - protein_coding processed_transcript MGP_C3HHeJ_T0086288.1 MGP_C3HHeJ_G0032713.1 mouse_genomes_project 7 131021977 131026783 - MGP_C3HHeJ_P0086288 protein_coding protein_coding MGP_C3HHeJ_T0086289.1 MGP_C3HHeJ_G0032713.1 mouse_genomes_project 7 131022514 131026833 - protein_coding processed_transcript MGP_C3HHeJ_T0085581.1 MGP_C3HHeJ_G0032579.1 mouse_genomes_project 7 117857650 117869964 - MGP_C3HHeJ_P0085581 Psma1 protein_coding protein_coding MGP_C3HHeJ_T0085582.1 MGP_C3HHeJ_G0032579.1 mouse_genomes_project 7 117857840 117869872 - Psma1 protein_coding processed_transcript MGP_C3HHeJ_T0085583.1 MGP_C3HHeJ_G0032579.1 mouse_genomes_project 7 117863527 117869900 - Psma1 protein_coding retained_intron MGP_C3HHeJ_T0085584.1 MGP_C3HHeJ_G0032579.1 mouse_genomes_project 7 117867639 117869889 - Psma1 protein_coding retained_intron MGP_C3HHeJ_T0083488.1 MGP_C3HHeJ_G0031947.1 mouse_genomes_project 7 46847411 46852477 + MGP_C3HHeJ_P0083488 Dbp protein_coding protein_coding MGP_C3HHeJ_T0083489.1 MGP_C3HHeJ_G0031947.1 mouse_genomes_project 7 46847946 46852436 + MGP_C3HHeJ_P0083489 Dbp protein_coding protein_coding MGP_C3HHeJ_T0083490.1 MGP_C3HHeJ_G0031947.1 mouse_genomes_project 7 46847946 46852436 + MGP_C3HHeJ_P0083490 Dbp protein_coding protein_coding MGP_C3HHeJ_T0083491.1 MGP_C3HHeJ_G0031947.1 mouse_genomes_project 7 46849425 46852350 + Dbp protein_coding retained_intron MGP_C3HHeJ_T0083492.1 MGP_C3HHeJ_G0031947.1 mouse_genomes_project 7 46850210 46852218 + Dbp protein_coding retained_intron MGP_C3HHeJ_T0008784.1 MGP_C3HHeJ_G0007087.1 mouse_genomes_project 7 44680733 44681207 - Gm44819 lincRNA lincRNA MGP_C3HHeJ_T0084499.1 MGP_C3HHeJ_G0032188.1 mouse_genomes_project 7 89567349 89605483 + MGP_C3HHeJ_P0084499 protein_coding protein_coding MGP_C3HHeJ_T0005089.1 MGP_C3HHeJ_G0004327.1 mouse_genomes_project 7 18220018 18222283 + Gm16175 antisense antisense MGP_C3HHeJ_T0002180.1 MGP_C3HHeJ_G0002101.1 mouse_genomes_project 7 40255914 40258889 + TEC TEC MGP_C3HHeJ_T0087518.1 MGP_C3HHeJ_G0032990.1 mouse_genomes_project 7 149777807 149782248 + MGP_C3HHeJ_P0087518 Fgf15 protein_coding protein_coding MGP_C3HHeJ_T0008946.1 MGP_C3HHeJ_G0007193.1 mouse_genomes_project 7 131073994 131077422 + Gm44939 lincRNA lincRNA MGP_C3HHeJ_T0015601.1 MGP_C3HHeJ_G0013705.1 mouse_genomes_project 7 44504196 44504749 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015662.1 MGP_C3HHeJ_G0013766.1 mouse_genomes_project 7 91129707 91130263 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102143.1 MGP_C3HHeJ_G0040107.1 mouse_genomes_project 7 161716 162560 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084191.1 MGP_C3HHeJ_G0032105.1 mouse_genomes_project 7 82435586 82499393 + MGP_C3HHeJ_P0084191 Zfp710 protein_coding protein_coding MGP_C3HHeJ_T0084192.1 MGP_C3HHeJ_G0032105.1 mouse_genomes_project 7 82436894 82492580 + MGP_C3HHeJ_P0084192 Zfp710 protein_coding protein_coding MGP_C3HHeJ_T0084193.1 MGP_C3HHeJ_G0032105.1 mouse_genomes_project 7 82491944 82505315 + MGP_C3HHeJ_P0084193 Zfp710 protein_coding protein_coding MGP_C3HHeJ_T0086458.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131807097 131813175 + MGP_C3HHeJ_P0086458 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0086459.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131807757 131833933 + MGP_C3HHeJ_P0086459 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0086460.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131808326 131813178 + MGP_C3HHeJ_P0086460 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0086461.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131808342 131834482 + MGP_C3HHeJ_P0086461 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0086462.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131810235 131833934 + MGP_C3HHeJ_P0086462 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0086463.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131810564 131832936 + MGP_C3HHeJ_P0086463 Fbxl19 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086464.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131811607 131833733 + MGP_C3HHeJ_P0086464 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0086465.1 MGP_C3HHeJ_G0032749.1 mouse_genomes_project 7 131811734 131834489 + MGP_C3HHeJ_P0086465 Fbxl19 protein_coding protein_coding MGP_C3HHeJ_T0002275.1 MGP_C3HHeJ_G0002195.1 mouse_genomes_project 7 131880894 131882233 - TEC TEC MGP_C3HHeJ_T0015682.1 MGP_C3HHeJ_G0013786.1 mouse_genomes_project 7 103305882 103306185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086248.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885459 130891044 - MGP_C3HHeJ_P0086248 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086249.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885506 130896716 - MGP_C3HHeJ_P0086249 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086250.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885508 130888591 - Tmem219 protein_coding retained_intron MGP_C3HHeJ_T0086251.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885508 130923780 - MGP_C3HHeJ_P0086251 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086252.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885508 130897545 - MGP_C3HHeJ_P0086252 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086253.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885508 130897568 - MGP_C3HHeJ_P0086253 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086254.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130885510 130896168 - MGP_C3HHeJ_P0086254 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086255.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130888310 130923782 - MGP_C3HHeJ_P0086255 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0086256.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130890268 130897573 - Tmem219 protein_coding retained_intron MGP_C3HHeJ_T0086257.1 MGP_C3HHeJ_G0032705.1 mouse_genomes_project 7 130890890 130923765 - MGP_C3HHeJ_P0086257 Tmem219 protein_coding protein_coding MGP_C3HHeJ_T0084804.1 MGP_C3HHeJ_G0032267.1 mouse_genomes_project 7 103369148 103416888 - MGP_C3HHeJ_P0084804 Ppme1 protein_coding protein_coding MGP_C3HHeJ_T0083603.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47966506 48003339 - MGP_C3HHeJ_P0083603 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083604.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47966506 48003311 - MGP_C3HHeJ_P0083604 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083605.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47966506 48002990 - MGP_C3HHeJ_P0083605 Hps5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083606.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47966509 48003088 - MGP_C3HHeJ_P0083606 Hps5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083607.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47966512 48003193 - MGP_C3HHeJ_P0083607 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083608.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47967019 48002990 - Hps5 protein_coding retained_intron MGP_C3HHeJ_T0083609.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47967280 47974891 - Hps5 protein_coding processed_transcript MGP_C3HHeJ_T0083610.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47968984 47980772 - MGP_C3HHeJ_P0083610 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083611.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47970772 47977843 - MGP_C3HHeJ_P0083611 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083612.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47972852 47974334 - Hps5 protein_coding retained_intron MGP_C3HHeJ_T0083613.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47981694 47984278 - Hps5 protein_coding retained_intron MGP_C3HHeJ_T0083614.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47992369 48003376 - MGP_C3HHeJ_P0083614 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083615.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47995619 48003015 - MGP_C3HHeJ_P0083615 Hps5 protein_coding protein_coding MGP_C3HHeJ_T0083616.1 MGP_C3HHeJ_G0031976.1 mouse_genomes_project 7 47996401 47998404 - Hps5 protein_coding processed_transcript MGP_C3HHeJ_T0085613.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119078725 119634832 - MGP_C3HHeJ_P0085613 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085614.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119079197 119634832 - MGP_C3HHeJ_P0085614 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085615.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119079197 119592378 - MGP_C3HHeJ_P0085615 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085616.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119079197 119642469 - MGP_C3HHeJ_P0085616 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085617.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119082307 119420781 - MGP_C3HHeJ_P0085617 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085618.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119084510 119443441 - MGP_C3HHeJ_P0085618 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085619.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119084510 119443476 - MGP_C3HHeJ_P0085619 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085620.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119084523 119592378 - MGP_C3HHeJ_P0085620 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085621.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119123000 119637350 - Sox6 protein_coding retained_intron MGP_C3HHeJ_T0085622.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119123434 119204904 - Sox6 protein_coding processed_transcript MGP_C3HHeJ_T0085623.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119148918 119642521 - Sox6 protein_coding retained_intron MGP_C3HHeJ_T0085624.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119194527 119272135 - MGP_C3HHeJ_P0085624 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085625.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119204236 119272135 - Sox6 protein_coding retained_intron MGP_C3HHeJ_T0085626.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119380721 119457150 - MGP_C3HHeJ_P0085626 Sox6 protein_coding protein_coding MGP_C3HHeJ_T0085627.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119405209 119638261 - Sox6 protein_coding processed_transcript MGP_C3HHeJ_T0085628.1 MGP_C3HHeJ_G0032585.1 mouse_genomes_project 7 119441508 119443487 - Sox6 protein_coding retained_intron MGP_C3HHeJ_T0083316.1 MGP_C3HHeJ_G0031897.1 mouse_genomes_project 7 46071775 46080965 - MGP_C3HHeJ_P0083316 protein_coding protein_coding MGP_C3HHeJ_T0081811.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23271316 23299357 + MGP_C3HHeJ_P0081811 Xrcc1 protein_coding protein_coding MGP_C3HHeJ_T0081812.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23272181 23299360 + MGP_C3HHeJ_P0081812 Xrcc1 protein_coding protein_coding MGP_C3HHeJ_T0081813.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23272229 23286581 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081814.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23272232 23277277 + Xrcc1 protein_coding processed_transcript MGP_C3HHeJ_T0081815.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23272312 23273594 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081816.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23272360 23292897 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081817.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23291523 23293498 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081818.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23293319 23296624 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081819.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23295657 23296642 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081820.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23295815 23296858 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081821.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23296493 23299362 + Xrcc1 protein_coding processed_transcript MGP_C3HHeJ_T0081822.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23297645 23299356 + Xrcc1 protein_coding retained_intron MGP_C3HHeJ_T0081823.1 MGP_C3HHeJ_G0031539.1 mouse_genomes_project 7 23298157 23299356 + Xrcc1 protein_coding processed_transcript MGP_C3HHeJ_T0015674.1 MGP_C3HHeJ_G0013778.1 mouse_genomes_project 7 100553820 100554299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083639.1 MGP_C3HHeJ_G0031982.1 mouse_genomes_project 7 48201587 48205803 + protein_coding processed_transcript MGP_C3HHeJ_T0083640.1 MGP_C3HHeJ_G0031982.1 mouse_genomes_project 7 48201668 48205811 + protein_coding processed_transcript MGP_C3HHeJ_T0083641.1 MGP_C3HHeJ_G0031982.1 mouse_genomes_project 7 48204827 48205804 + MGP_C3HHeJ_P0083641 protein_coding protein_coding MGP_C3HHeJ_T0080832.1 MGP_C3HHeJ_G0031225.1 mouse_genomes_project 7 500350 503273 + MGP_C3HHeJ_P0080832 Ndufa3 protein_coding protein_coding MGP_C3HHeJ_T0080833.1 MGP_C3HHeJ_G0031225.1 mouse_genomes_project 7 500357 503098 + Ndufa3 protein_coding retained_intron MGP_C3HHeJ_T0080834.1 MGP_C3HHeJ_G0031225.1 mouse_genomes_project 7 500362 500683 + Ndufa3 protein_coding retained_intron MGP_C3HHeJ_T0080835.1 MGP_C3HHeJ_G0031225.1 mouse_genomes_project 7 500363 503074 + MGP_C3HHeJ_P0080835 Ndufa3 protein_coding protein_coding MGP_C3HHeJ_T0080836.1 MGP_C3HHeJ_G0031225.1 mouse_genomes_project 7 500368 503109 + MGP_C3HHeJ_P0080836 Ndufa3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080837.1 MGP_C3HHeJ_G0031225.1 mouse_genomes_project 7 500594 503031 + MGP_C3HHeJ_P0080837 Ndufa3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085219.1 MGP_C3HHeJ_G0032448.1 mouse_genomes_project 7 108753237 108754828 - MGP_C3HHeJ_P0085219 Prkcdbp protein_coding protein_coding MGP_C3HHeJ_T0015683.1 MGP_C3HHeJ_G0013787.1 mouse_genomes_project 7 103648203 103648556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005102.1 MGP_C3HHeJ_G0004337.1 mouse_genomes_project 7 26176258 26184686 - Gm15883 antisense antisense MGP_C3HHeJ_T0015489.1 MGP_C3HHeJ_G0013593.1 mouse_genomes_project 7 1139405 1139559 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015536.1 MGP_C3HHeJ_G0013640.1 mouse_genomes_project 7 23020546 23023306 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102157.1 MGP_C3HHeJ_G0040121.1 mouse_genomes_project 7 9341253 9341645 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083953.1 MGP_C3HHeJ_G0032059.1 mouse_genomes_project 7 68667572 68764886 + MGP_C3HHeJ_P0083953 Cers3 protein_coding protein_coding MGP_C3HHeJ_T0002257.1 MGP_C3HHeJ_G0002177.1 mouse_genomes_project 7 126017847 126018863 - TEC TEC MGP_C3HHeJ_T0086005.1 MGP_C3HHeJ_G0032670.1 mouse_genomes_project 7 129810699 130021048 - MGP_C3HHeJ_P0086005 Gsg1l protein_coding protein_coding MGP_C3HHeJ_T0015584.1 MGP_C3HHeJ_G0013688.1 mouse_genomes_project 7 41981246 41984725 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102178.1 MGP_C3HHeJ_G0040142.1 mouse_genomes_project 7 12317807 12318327 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083457.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46685462 46698045 + MGP_C3HHeJ_P0083457 Hsd17b14 protein_coding protein_coding MGP_C3HHeJ_T0083458.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46685506 46698479 + MGP_C3HHeJ_P0083458 Hsd17b14 protein_coding protein_coding MGP_C3HHeJ_T0083459.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46686603 46698042 + Hsd17b14 protein_coding retained_intron MGP_C3HHeJ_T0083460.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46690205 46696736 + Hsd17b14 protein_coding retained_intron MGP_C3HHeJ_T0083461.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46693061 46696911 + Hsd17b14 protein_coding processed_transcript MGP_C3HHeJ_T0083462.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46693072 46697412 + Hsd17b14 protein_coding processed_transcript MGP_C3HHeJ_T0083463.1 MGP_C3HHeJ_G0031936.1 mouse_genomes_project 7 46693987 46696928 + Hsd17b14 protein_coding processed_transcript MGP_C3HHeJ_T0081208.1 MGP_C3HHeJ_G0031346.1 mouse_genomes_project 7 9958706 9966305 - MGP_C3HHeJ_P0081208 Zfp551 protein_coding protein_coding MGP_C3HHeJ_T0081209.1 MGP_C3HHeJ_G0031346.1 mouse_genomes_project 7 9960502 9966042 - MGP_C3HHeJ_P0081209 Zfp551 protein_coding protein_coding MGP_C3HHeJ_T0081210.1 MGP_C3HHeJ_G0031346.1 mouse_genomes_project 7 9960655 9965993 - Zfp551 protein_coding processed_transcript MGP_C3HHeJ_T0010739.1 MGP_C3HHeJ_G0008872.1 mouse_genomes_project 7 113555 113632 + Mir291b miRNA miRNA MGP_C3HHeJ_T0100862.1 MGP_C3HHeJ_G0039056.1 mouse_genomes_project 7 124836550 124836687 - Gm27991 snoRNA snoRNA MGP_C3HHeJ_T0084528.1 MGP_C3HHeJ_G0032197.1 mouse_genomes_project 7 92327933 92328961 - MGP_C3HHeJ_P0084528 protein_coding protein_coding MGP_C3HHeJ_T0102185.1 MGP_C3HHeJ_G0040149.1 mouse_genomes_project 7 12420527 12420730 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100847.1 MGP_C3HHeJ_G0039041.1 mouse_genomes_project 7 102649003 102649134 - Gm25409 snoRNA snoRNA MGP_C3HHeJ_T0008802.1 MGP_C3HHeJ_G0007102.1 mouse_genomes_project 7 67479176 67513912 + BC046251 lincRNA lincRNA MGP_C3HHeJ_T0015600.1 MGP_C3HHeJ_G0013704.1 mouse_genomes_project 7 44384941 44385671 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008751.1 MGP_C3HHeJ_G0007062.1 mouse_genomes_project 7 34793426 34802368 - Gm12756 lincRNA lincRNA MGP_C3HHeJ_T0085074.1 MGP_C3HHeJ_G0032343.1 mouse_genomes_project 7 106322844 106323804 + MGP_C3HHeJ_P0085074 Olfr585 protein_coding protein_coding MGP_C3HHeJ_T0085064.1 MGP_C3HHeJ_G0032334.1 mouse_genomes_project 7 106150314 106151271 + MGP_C3HHeJ_P0085064 Olfr572 protein_coding protein_coding MGP_C3HHeJ_T0081411.1 MGP_C3HHeJ_G0031412.1 mouse_genomes_project 7 14436806 14460569 - MGP_C3HHeJ_P0081411 Npas1 protein_coding protein_coding MGP_C3HHeJ_T0008947.1 MGP_C3HHeJ_G0007194.1 mouse_genomes_project 7 131315027 131318006 + Gm44728 lincRNA lincRNA MGP_C3HHeJ_T0008948.1 MGP_C3HHeJ_G0007194.1 mouse_genomes_project 7 131315513 131318418 + Gm44728 lincRNA lincRNA MGP_C3HHeJ_T0083893.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67586960 67599683 + MGP_C3HHeJ_P0083893 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083894.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589199 67599674 + MGP_C3HHeJ_P0083894 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083895.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589208 67599685 + MGP_C3HHeJ_P0083895 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083896.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589238 67594210 + MGP_C3HHeJ_P0083896 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083897.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589258 67594357 + MGP_C3HHeJ_P0083897 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083898.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589267 67599672 + MGP_C3HHeJ_P0083898 Tm2d3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083899.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589268 67599674 + MGP_C3HHeJ_P0083899 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083900.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589272 67591019 + MGP_C3HHeJ_P0083900 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083901.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589315 67596924 + MGP_C3HHeJ_P0083901 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0083902.1 MGP_C3HHeJ_G0032048.1 mouse_genomes_project 7 67589315 67594352 + MGP_C3HHeJ_P0083902 Tm2d3 protein_coding protein_coding MGP_C3HHeJ_T0015553.1 MGP_C3HHeJ_G0013657.1 mouse_genomes_project 7 26205591 26205838 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082136.1 MGP_C3HHeJ_G0031619.1 mouse_genomes_project 7 26567123 26570532 + MGP_C3HHeJ_P0082136 Sertad1 protein_coding protein_coding MGP_C3HHeJ_T0082137.1 MGP_C3HHeJ_G0031619.1 mouse_genomes_project 7 26567588 26569723 + MGP_C3HHeJ_P0082137 Sertad1 protein_coding protein_coding MGP_C3HHeJ_T0098541.1 MGP_C3HHeJ_G0036742.1 mouse_genomes_project 7 119900384 119901776 - Gm44867 sense_intronic sense_intronic MGP_C3HHeJ_T0098542.1 MGP_C3HHeJ_G0036742.1 mouse_genomes_project 7 119900384 119901634 - Gm44867 sense_intronic sense_intronic MGP_C3HHeJ_T0102168.1 MGP_C3HHeJ_G0040132.1 mouse_genomes_project 7 9946638 9948065 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085076.1 MGP_C3HHeJ_G0032345.1 mouse_genomes_project 7 106384755 106385709 - MGP_C3HHeJ_P0085076 Olfr589 protein_coding protein_coding MGP_C3HHeJ_T0086425.1 MGP_C3HHeJ_G0032743.1 mouse_genomes_project 7 131642641 131648855 - MGP_C3HHeJ_P0086425 Ccdc189 protein_coding protein_coding MGP_C3HHeJ_T0086426.1 MGP_C3HHeJ_G0032743.1 mouse_genomes_project 7 131643618 131646599 - MGP_C3HHeJ_P0086426 Ccdc189 protein_coding protein_coding MGP_C3HHeJ_T0086427.1 MGP_C3HHeJ_G0032743.1 mouse_genomes_project 7 131643645 131645981 - Ccdc189 protein_coding retained_intron MGP_C3HHeJ_T0086428.1 MGP_C3HHeJ_G0032743.1 mouse_genomes_project 7 131645471 131648429 - Ccdc189 protein_coding retained_intron MGP_C3HHeJ_T0086429.1 MGP_C3HHeJ_G0032743.1 mouse_genomes_project 7 131647323 131648640 - Ccdc189 protein_coding retained_intron MGP_C3HHeJ_T0084451.1 MGP_C3HHeJ_G0032157.1 mouse_genomes_project 7 86351265 86367477 - MGP_C3HHeJ_P0084451 Cfap161 protein_coding protein_coding MGP_C3HHeJ_T0084452.1 MGP_C3HHeJ_G0032157.1 mouse_genomes_project 7 86352785 86367538 - MGP_C3HHeJ_P0084452 Cfap161 protein_coding protein_coding MGP_C3HHeJ_T0084453.1 MGP_C3HHeJ_G0032157.1 mouse_genomes_project 7 86358857 86366829 - MGP_C3HHeJ_P0084453 Cfap161 protein_coding protein_coding MGP_C3HHeJ_T0083385.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445166 46472286 - MGP_C3HHeJ_P0083385 Ppfia3 protein_coding protein_coding MGP_C3HHeJ_T0083386.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445167 46446812 - Ppfia3 protein_coding processed_transcript MGP_C3HHeJ_T0083387.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445167 46472591 - MGP_C3HHeJ_P0083387 Ppfia3 protein_coding protein_coding MGP_C3HHeJ_T0083388.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445313 46472591 - Ppfia3 protein_coding retained_intron MGP_C3HHeJ_T0083389.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445315 46465689 - MGP_C3HHeJ_P0083389 Ppfia3 protein_coding protein_coding MGP_C3HHeJ_T0083390.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445321 46446803 - Ppfia3 protein_coding processed_transcript MGP_C3HHeJ_T0083391.1 MGP_C3HHeJ_G0031922.1 mouse_genomes_project 7 46445862 46447201 - Ppfia3 protein_coding retained_intron MGP_C3HHeJ_T0087300.1 MGP_C3HHeJ_G0032950.1 mouse_genomes_project 7 147035097 147036054 - MGP_C3HHeJ_P0087300 protein_coding protein_coding MGP_C3HHeJ_T0083507.1 MGP_C3HHeJ_G0031952.1 mouse_genomes_project 7 46872345 46906744 - MGP_C3HHeJ_P0083507 Sult2b1 protein_coding protein_coding MGP_C3HHeJ_T0083508.1 MGP_C3HHeJ_G0031952.1 mouse_genomes_project 7 46872362 46887637 - MGP_C3HHeJ_P0083508 Sult2b1 protein_coding protein_coding MGP_C3HHeJ_T0083509.1 MGP_C3HHeJ_G0031952.1 mouse_genomes_project 7 46877423 46887637 - MGP_C3HHeJ_P0083509 Sult2b1 protein_coding protein_coding MGP_C3HHeJ_T0083510.1 MGP_C3HHeJ_G0031952.1 mouse_genomes_project 7 46877457 46887900 - Sult2b1 protein_coding processed_transcript MGP_C3HHeJ_T0083511.1 MGP_C3HHeJ_G0031952.1 mouse_genomes_project 7 46905605 46906662 - Sult2b1 protein_coding processed_transcript MGP_C3HHeJ_T0082379.1 MGP_C3HHeJ_G0031682.1 mouse_genomes_project 7 28525762 28534961 + MGP_C3HHeJ_P0082379 Yif1b protein_coding protein_coding MGP_C3HHeJ_T0082380.1 MGP_C3HHeJ_G0031682.1 mouse_genomes_project 7 28525786 28534961 + MGP_C3HHeJ_P0082380 Yif1b protein_coding protein_coding MGP_C3HHeJ_T0082381.1 MGP_C3HHeJ_G0031682.1 mouse_genomes_project 7 28525802 28532273 + MGP_C3HHeJ_P0082381 Yif1b protein_coding protein_coding MGP_C3HHeJ_T0082382.1 MGP_C3HHeJ_G0031682.1 mouse_genomes_project 7 28525885 28535025 + MGP_C3HHeJ_P0082382 Yif1b protein_coding protein_coding MGP_C3HHeJ_T0082383.1 MGP_C3HHeJ_G0031682.1 mouse_genomes_project 7 28525906 28533426 + Yif1b protein_coding processed_transcript MGP_C3HHeJ_T0087517.1 MGP_C3HHeJ_G0032989.1 mouse_genomes_project 7 149738501 149742359 + MGP_C3HHeJ_P0087517 Fgf4 protein_coding protein_coding MGP_C3HHeJ_T0102278.1 MGP_C3HHeJ_G0040241.1 mouse_genomes_project 7 88134347 88135222 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081318.1 MGP_C3HHeJ_G0031381.1 mouse_genomes_project 7 11988378 12025610 - MGP_C3HHeJ_P0081318 Sult2a6 protein_coding protein_coding MGP_C3HHeJ_T0081319.1 MGP_C3HHeJ_G0031381.1 mouse_genomes_project 7 11988386 12025610 - MGP_C3HHeJ_P0081319 Sult2a6 protein_coding protein_coding MGP_C3HHeJ_T0010759.1 MGP_C3HHeJ_G0008892.1 mouse_genomes_project 7 24034692 24034750 - Mir7048 miRNA miRNA MGP_C3HHeJ_T0082089.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26296928 26325337 + MGP_C3HHeJ_P0082089 Coq8b protein_coding protein_coding MGP_C3HHeJ_T0082090.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26297118 26325331 + MGP_C3HHeJ_P0082090 Coq8b protein_coding protein_coding MGP_C3HHeJ_T0082091.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26297262 26325332 + MGP_C3HHeJ_P0082091 Coq8b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082092.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26305314 26309081 + Coq8b protein_coding processed_transcript MGP_C3HHeJ_T0082093.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26305575 26308379 + Coq8b protein_coding retained_intron MGP_C3HHeJ_T0082094.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26317560 26325330 + Coq8b protein_coding retained_intron MGP_C3HHeJ_T0082095.1 MGP_C3HHeJ_G0031610.1 mouse_genomes_project 7 26317762 26324793 + Coq8b protein_coding processed_transcript MGP_C3HHeJ_T0083125.1 MGP_C3HHeJ_G0031857.1 mouse_genomes_project 7 44992788 44997356 + MGP_C3HHeJ_P0083125 Klk1b1 protein_coding protein_coding MGP_C3HHeJ_T0015535.1 MGP_C3HHeJ_G0013639.1 mouse_genomes_project 7 23018962 23019361 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018190.1 MGP_C3HHeJ_G0015450.1 mouse_genomes_project 7 130764453 130773971 - Gm9967 processed_transcript antisense MGP_C3HHeJ_T0018191.1 MGP_C3HHeJ_G0015450.1 mouse_genomes_project 7 130770896 130773959 - Gm9967 processed_transcript antisense MGP_C3HHeJ_T0018192.1 MGP_C3HHeJ_G0015450.1 mouse_genomes_project 7 130772157 130774011 - Gm9967 processed_transcript retained_intron MGP_C3HHeJ_T0098181.1 MGP_C3HHeJ_G0036393.1 mouse_genomes_project 7 116676844 116676955 + Gm23662 rRNA rRNA MGP_C3HHeJ_T0086510.1 MGP_C3HHeJ_G0032758.1 mouse_genomes_project 7 131962284 131967417 - MGP_C3HHeJ_P0086510 Prss53 protein_coding protein_coding MGP_C3HHeJ_T0086511.1 MGP_C3HHeJ_G0032758.1 mouse_genomes_project 7 131962536 131967414 - MGP_C3HHeJ_P0086511 Prss53 protein_coding protein_coding MGP_C3HHeJ_T0086513.1 MGP_C3HHeJ_G0032758.1 mouse_genomes_project 7 131962705 131966314 - MGP_C3HHeJ_P0086513 Prss53 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084056.1 MGP_C3HHeJ_G0032080.1 mouse_genomes_project 7 78476083 79398905 + MGP_C3HHeJ_P0084056 Agbl1 protein_coding protein_coding MGP_C3HHeJ_T0084057.1 MGP_C3HHeJ_G0032080.1 mouse_genomes_project 7 78658716 78956887 + MGP_C3HHeJ_P0084057 Agbl1 protein_coding protein_coding MGP_C3HHeJ_T0084058.1 MGP_C3HHeJ_G0032080.1 mouse_genomes_project 7 78658716 79025004 + MGP_C3HHeJ_P0084058 Agbl1 protein_coding protein_coding MGP_C3HHeJ_T0085436.1 MGP_C3HHeJ_G0032547.1 mouse_genomes_project 7 113252920 113320607 - MGP_C3HHeJ_P0085436 Scube2 protein_coding protein_coding MGP_C3HHeJ_T0085437.1 MGP_C3HHeJ_G0032547.1 mouse_genomes_project 7 113252920 113320700 - MGP_C3HHeJ_P0085437 Scube2 protein_coding protein_coding MGP_C3HHeJ_T0085438.1 MGP_C3HHeJ_G0032547.1 mouse_genomes_project 7 113253052 113320664 - MGP_C3HHeJ_P0085438 Scube2 protein_coding protein_coding MGP_C3HHeJ_T0085439.1 MGP_C3HHeJ_G0032547.1 mouse_genomes_project 7 113253308 113296617 - Scube2 protein_coding processed_transcript MGP_C3HHeJ_T0085440.1 MGP_C3HHeJ_G0032547.1 mouse_genomes_project 7 113254864 113263481 - Scube2 protein_coding processed_transcript MGP_C3HHeJ_T0087414.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147864274 147869683 - MGP_C3HHeJ_P0087414 Trpm5 protein_coding protein_coding MGP_C3HHeJ_T0087421.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147866212 147869159 - MGP_C3HHeJ_P0087421 Trpm5 protein_coding protein_coding MGP_C3HHeJ_T0087422.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147866338 147869975 - Trpm5 protein_coding retained_intron MGP_C3HHeJ_T0087423.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147866650 147882336 - Trpm5 protein_coding retained_intron MGP_C3HHeJ_T0087424.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147866910 147889764 - MGP_C3HHeJ_P0087424 Trpm5 protein_coding protein_coding MGP_C3HHeJ_T0087425.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147867299 147882251 - Trpm5 protein_coding retained_intron MGP_C3HHeJ_T0087426.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147867463 147889728 - MGP_C3HHeJ_P0087426 Trpm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087427.1 MGP_C3HHeJ_G0032968.1 mouse_genomes_project 7 147875837 147877044 - Trpm5 protein_coding retained_intron MGP_C3HHeJ_T0002186.1 MGP_C3HHeJ_G0002107.1 mouse_genomes_project 7 44732045 44732479 + TEC TEC MGP_C3HHeJ_T0081324.1 MGP_C3HHeJ_G0031384.1 mouse_genomes_project 7 12231261 12260565 - MGP_C3HHeJ_P0081324 Sult2a7 protein_coding protein_coding MGP_C3HHeJ_T0081325.1 MGP_C3HHeJ_G0031384.1 mouse_genomes_project 7 12231338 12259563 - MGP_C3HHeJ_P0081325 Sult2a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083862.1 MGP_C3HHeJ_G0032041.1 mouse_genomes_project 7 66253184 66268898 - MGP_C3HHeJ_P0083862 Mphosph10 protein_coding protein_coding MGP_C3HHeJ_T0083863.1 MGP_C3HHeJ_G0032041.1 mouse_genomes_project 7 66253933 66261153 - Mphosph10 protein_coding retained_intron MGP_C3HHeJ_T0083864.1 MGP_C3HHeJ_G0032041.1 mouse_genomes_project 7 66264618 66268866 - Mphosph10 protein_coding retained_intron MGP_C3HHeJ_T0086788.1 MGP_C3HHeJ_G0032815.1 mouse_genomes_project 7 137254426 137309266 + MGP_C3HHeJ_P0086788 Zranb1 protein_coding protein_coding MGP_C3HHeJ_T0086789.1 MGP_C3HHeJ_G0032815.1 mouse_genomes_project 7 137306175 137308083 + Zranb1 protein_coding retained_intron MGP_C3HHeJ_T0087341.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + Tnnt3 protein_coding processed_transcript MGP_C3HHeJ_T0087342.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087342 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087343.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087343 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087344.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087344 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087345.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087345 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087346.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087346 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087347.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087347 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087348.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278686 147295827 + MGP_C3HHeJ_P0087348 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087349.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278693 147295822 + MGP_C3HHeJ_P0087349 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087350.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278693 147295822 + MGP_C3HHeJ_P0087350 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087351.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278693 147295822 + MGP_C3HHeJ_P0087351 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087352.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278693 147295822 + MGP_C3HHeJ_P0087352 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087353.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278714 147295826 + MGP_C3HHeJ_P0087353 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087354.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147278722 147295823 + MGP_C3HHeJ_P0087354 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087355.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281467 147291355 + MGP_C3HHeJ_P0087355 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087356.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281470 147292441 + MGP_C3HHeJ_P0087356 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087357.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087357 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087358.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087358 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087359.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087359 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087360.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087360 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087361.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087361 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087362.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087362 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087363.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087363 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087364.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147281488 147295649 + MGP_C3HHeJ_P0087364 Tnnt3 protein_coding protein_coding MGP_C3HHeJ_T0087365.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147283851 147292404 + Tnnt3 protein_coding retained_intron MGP_C3HHeJ_T0087366.1 MGP_C3HHeJ_G0032958.1 mouse_genomes_project 7 147293948 147295828 + Tnnt3 protein_coding retained_intron MGP_C3HHeJ_T0084320.1 MGP_C3HHeJ_G0032123.1 mouse_genomes_project 7 83327119 83341893 + MGP_C3HHeJ_P0084320 Zscan2 protein_coding protein_coding MGP_C3HHeJ_T0084321.1 MGP_C3HHeJ_G0032123.1 mouse_genomes_project 7 83327150 83330407 + MGP_C3HHeJ_P0084321 Zscan2 protein_coding protein_coding MGP_C3HHeJ_T0084322.1 MGP_C3HHeJ_G0032123.1 mouse_genomes_project 7 83327152 83342812 + MGP_C3HHeJ_P0084322 Zscan2 protein_coding protein_coding MGP_C3HHeJ_T0084323.1 MGP_C3HHeJ_G0032123.1 mouse_genomes_project 7 83328307 83344315 + MGP_C3HHeJ_P0084323 Zscan2 protein_coding protein_coding MGP_C3HHeJ_T0084324.1 MGP_C3HHeJ_G0032123.1 mouse_genomes_project 7 83329841 83342022 + MGP_C3HHeJ_P0084324 Zscan2 protein_coding protein_coding MGP_C3HHeJ_T0083788.1 MGP_C3HHeJ_G0032024.1 mouse_genomes_project 7 59028832 59444842 + MGP_C3HHeJ_P0083788 Gabrb3 protein_coding protein_coding MGP_C3HHeJ_T0083789.1 MGP_C3HHeJ_G0032024.1 mouse_genomes_project 7 59204651 59443680 + MGP_C3HHeJ_P0083789 Gabrb3 protein_coding protein_coding MGP_C3HHeJ_T0083790.1 MGP_C3HHeJ_G0032024.1 mouse_genomes_project 7 59205295 59444846 + MGP_C3HHeJ_P0083790 Gabrb3 protein_coding protein_coding MGP_C3HHeJ_T0083791.1 MGP_C3HHeJ_G0032024.1 mouse_genomes_project 7 59205306 59380660 + Gabrb3 protein_coding retained_intron MGP_C3HHeJ_T0083792.1 MGP_C3HHeJ_G0032024.1 mouse_genomes_project 7 59205663 59432419 + MGP_C3HHeJ_P0083792 Gabrb3 protein_coding protein_coding MGP_C3HHeJ_T0083793.1 MGP_C3HHeJ_G0032024.1 mouse_genomes_project 7 59407022 59432364 + Gabrb3 protein_coding retained_intron MGP_C3HHeJ_T0083999.1 MGP_C3HHeJ_G0032068.1 mouse_genomes_project 7 70762489 70774687 - MGP_C3HHeJ_P0083999 Arrdc4 protein_coding protein_coding MGP_C3HHeJ_T0084000.1 MGP_C3HHeJ_G0032068.1 mouse_genomes_project 7 70766956 70770352 - Arrdc4 protein_coding retained_intron MGP_C3HHeJ_T0084001.1 MGP_C3HHeJ_G0032068.1 mouse_genomes_project 7 70767048 70774634 - MGP_C3HHeJ_P0084001 Arrdc4 protein_coding protein_coding MGP_C3HHeJ_T0005091.1 MGP_C3HHeJ_G0004329.1 mouse_genomes_project 7 18331609 18338600 + Gm16251 antisense antisense MGP_C3HHeJ_T0081410.1 MGP_C3HHeJ_G0031411.1 mouse_genomes_project 7 14433858 14436575 + MGP_C3HHeJ_P0081410 Tmem160 protein_coding protein_coding MGP_C3HHeJ_T0087293.1 MGP_C3HHeJ_G0032943.1 mouse_genomes_project 7 146878861 146881584 - MGP_C3HHeJ_P0087293 protein_coding protein_coding MGP_C3HHeJ_T0085716.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122433658 122544124 + MGP_C3HHeJ_P0085716 9030624J02Rik protein_coding protein_coding MGP_C3HHeJ_T0085717.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122434117 122482523 + 9030624J02Rik protein_coding processed_transcript MGP_C3HHeJ_T0085718.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122434132 122542648 + MGP_C3HHeJ_P0085718 9030624J02Rik protein_coding protein_coding MGP_C3HHeJ_T0085719.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122434132 122542638 + MGP_C3HHeJ_P0085719 9030624J02Rik protein_coding protein_coding MGP_C3HHeJ_T0085720.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122434132 122459663 + MGP_C3HHeJ_P0085720 9030624J02Rik protein_coding protein_coding MGP_C3HHeJ_T0085721.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122434134 122444388 + 9030624J02Rik protein_coding retained_intron MGP_C3HHeJ_T0085722.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122444619 122463944 + 9030624J02Rik protein_coding retained_intron MGP_C3HHeJ_T0085723.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122448853 122450409 + 9030624J02Rik protein_coding retained_intron MGP_C3HHeJ_T0085724.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122461626 122542646 + MGP_C3HHeJ_P0085724 9030624J02Rik protein_coding protein_coding MGP_C3HHeJ_T0085725.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122493341 122526595 + MGP_C3HHeJ_P0085725 9030624J02Rik protein_coding protein_coding MGP_C3HHeJ_T0085726.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122504066 122535181 + 9030624J02Rik protein_coding retained_intron MGP_C3HHeJ_T0085727.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122506689 122514115 + 9030624J02Rik protein_coding retained_intron MGP_C3HHeJ_T0085728.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122522040 122526819 + 9030624J02Rik protein_coding retained_intron MGP_C3HHeJ_T0085729.1 MGP_C3HHeJ_G0032602.1 mouse_genomes_project 7 122524973 122542458 + 9030624J02Rik protein_coding processed_transcript MGP_C3HHeJ_T0081079.1 MGP_C3HHeJ_G0031274.1 mouse_genomes_project 7 1970449 1978539 - MGP_C3HHeJ_P0081079 Sbk2 protein_coding protein_coding MGP_C3HHeJ_T0081080.1 MGP_C3HHeJ_G0031274.1 mouse_genomes_project 7 1971393 1978542 - MGP_C3HHeJ_P0081080 Sbk2 protein_coding protein_coding MGP_C3HHeJ_T0081081.1 MGP_C3HHeJ_G0031274.1 mouse_genomes_project 7 1971834 1978548 - MGP_C3HHeJ_P0081081 Sbk2 protein_coding protein_coding MGP_C3HHeJ_T0081082.1 MGP_C3HHeJ_G0031274.1 mouse_genomes_project 7 1975281 1978584 - Sbk2 protein_coding processed_transcript MGP_C3HHeJ_T0008743.1 MGP_C3HHeJ_G0007055.1 mouse_genomes_project 7 30052014 30054097 + Gm26610 lincRNA lincRNA MGP_C3HHeJ_T0005193.1 MGP_C3HHeJ_G0004402.1 mouse_genomes_project 7 107551237 107552156 - antisense antisense MGP_C3HHeJ_T0085375.1 MGP_C3HHeJ_G0032516.1 mouse_genomes_project 7 111756897 111757844 + MGP_C3HHeJ_P0085375 protein_coding protein_coding MGP_C3HHeJ_T0015654.1 MGP_C3HHeJ_G0013758.1 mouse_genomes_project 7 83949834 83950611 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015707.1 MGP_C3HHeJ_G0013811.1 mouse_genomes_project 7 126348968 126349209 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081507.1 MGP_C3HHeJ_G0031445.1 mouse_genomes_project 7 16780095 16839691 - MGP_C3HHeJ_P0081507 protein_coding protein_coding MGP_C3HHeJ_T0081830.1 MGP_C3HHeJ_G0031543.1 mouse_genomes_project 7 23359048 23363585 + MGP_C3HHeJ_P0081830 Lypd3 protein_coding protein_coding MGP_C3HHeJ_T0085340.1 MGP_C3HHeJ_G0032488.1 mouse_genomes_project 7 110462458 110463562 + MGP_C3HHeJ_P0085340 Olfr716 protein_coding protein_coding MGP_C3HHeJ_T0102286.1 MGP_C3HHeJ_G0040249.1 mouse_genomes_project 7 88601032 88602635 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0080955.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1418467 1426989 + MGP_C3HHeJ_P0080955 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080956.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1418467 1427732 + MGP_C3HHeJ_P0080956 Eps8l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080957.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1418476 1437117 + MGP_C3HHeJ_P0080957 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080958.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422254 1428596 + MGP_C3HHeJ_P0080958 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080959.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422496 1427131 + Eps8l1 protein_coding retained_intron MGP_C3HHeJ_T0080960.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422503 1427941 + Eps8l1 protein_coding retained_intron MGP_C3HHeJ_T0080961.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422503 1436955 + MGP_C3HHeJ_P0080961 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080962.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422530 1427804 + MGP_C3HHeJ_P0080962 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080963.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422610 1438200 + MGP_C3HHeJ_P0080963 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080964.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422622 1436953 + MGP_C3HHeJ_P0080964 Eps8l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080965.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1422630 1427681 + MGP_C3HHeJ_P0080965 Eps8l1 protein_coding protein_coding MGP_C3HHeJ_T0080966.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1431691 1432345 + Eps8l1 protein_coding processed_transcript MGP_C3HHeJ_T0080967.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1435140 1435683 + Eps8l1 protein_coding processed_transcript MGP_C3HHeJ_T0080968.1 MGP_C3HHeJ_G0031248.1 mouse_genomes_project 7 1435378 1436957 + MGP_C3HHeJ_P0080968 Eps8l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083496.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46860459 46863157 + MGP_C3HHeJ_P0083496 Rpl18 protein_coding protein_coding MGP_C3HHeJ_T0083497.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46861474 46862447 + Rpl18 protein_coding retained_intron MGP_C3HHeJ_T0083498.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46861531 46862679 + MGP_C3HHeJ_P0083498 Rpl18 protein_coding protein_coding MGP_C3HHeJ_T0083499.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46861584 46863107 + Rpl18 protein_coding retained_intron MGP_C3HHeJ_T0083500.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46861917 46863149 + MGP_C3HHeJ_P0083500 Rpl18 protein_coding protein_coding MGP_C3HHeJ_T0083501.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46861942 46863152 + MGP_C3HHeJ_P0083501 Rpl18 protein_coding protein_coding MGP_C3HHeJ_T0083502.1 MGP_C3HHeJ_G0031949.1 mouse_genomes_project 7 46862476 46863152 + Rpl18 protein_coding retained_intron MGP_C3HHeJ_T0008909.1 MGP_C3HHeJ_G0007173.1 mouse_genomes_project 7 118544207 118579428 + A730082K24Rik lincRNA lincRNA MGP_C3HHeJ_T0008910.1 MGP_C3HHeJ_G0007173.1 mouse_genomes_project 7 118544245 118553599 + A730082K24Rik lincRNA lincRNA MGP_C3HHeJ_T0008911.1 MGP_C3HHeJ_G0007173.1 mouse_genomes_project 7 118546726 118570790 + A730082K24Rik lincRNA lincRNA MGP_C3HHeJ_T0008912.1 MGP_C3HHeJ_G0007173.1 mouse_genomes_project 7 118546741 118570754 + A730082K24Rik lincRNA lincRNA MGP_C3HHeJ_T0008913.1 MGP_C3HHeJ_G0007173.1 mouse_genomes_project 7 118546759 118578333 + A730082K24Rik lincRNA lincRNA MGP_C3HHeJ_T0081042.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728337 1729640 - MGP_C3HHeJ_P0081042 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0081043.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728337 1729569 - MGP_C3HHeJ_P0081043 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0081044.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728337 1729518 - MGP_C3HHeJ_P0081044 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0081045.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728337 1729569 - MGP_C3HHeJ_P0081045 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0081046.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728339 1729555 - MGP_C3HHeJ_P0081046 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0081047.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728340 1729569 - MGP_C3HHeJ_P0081047 Cox6b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081048.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728400 1729584 - MGP_C3HHeJ_P0081048 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0081049.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728470 1729074 - Cox6b2 protein_coding retained_intron MGP_C3HHeJ_T0081050.1 MGP_C3HHeJ_G0031261.1 mouse_genomes_project 7 1728492 1729548 - MGP_C3HHeJ_P0081050 Cox6b2 protein_coding protein_coding MGP_C3HHeJ_T0084663.1 MGP_C3HHeJ_G0032230.1 mouse_genomes_project 7 100630434 100644824 - MGP_C3HHeJ_P0084663 Aqp11 protein_coding protein_coding MGP_C3HHeJ_T0084664.1 MGP_C3HHeJ_G0032230.1 mouse_genomes_project 7 100632813 100644474 - MGP_C3HHeJ_P0084664 Aqp11 protein_coding protein_coding MGP_C3HHeJ_T0084665.1 MGP_C3HHeJ_G0032230.1 mouse_genomes_project 7 100632982 100635813 - Aqp11 protein_coding retained_intron MGP_C3HHeJ_T0084666.1 MGP_C3HHeJ_G0032230.1 mouse_genomes_project 7 100633857 100639720 - Aqp11 protein_coding retained_intron MGP_C3HHeJ_T0084667.1 MGP_C3HHeJ_G0032230.1 mouse_genomes_project 7 100635478 100636934 - Aqp11 protein_coding processed_transcript MGP_C3HHeJ_T0099564.1 MGP_C3HHeJ_G0037758.1 mouse_genomes_project 7 14963740 14963847 - Gm25815 snRNA snRNA MGP_C3HHeJ_T0085048.1 MGP_C3HHeJ_G0032319.1 mouse_genomes_project 7 105833275 105834256 - MGP_C3HHeJ_P0085048 Olfr553 protein_coding protein_coding MGP_C3HHeJ_T0083088.1 MGP_C3HHeJ_G0031839.1 mouse_genomes_project 7 44610281 44623366 + MGP_C3HHeJ_P0083088 Zfp819 protein_coding protein_coding MGP_C3HHeJ_T0083089.1 MGP_C3HHeJ_G0031839.1 mouse_genomes_project 7 44610321 44617819 + MGP_C3HHeJ_P0083089 Zfp819 protein_coding protein_coding MGP_C3HHeJ_T0083090.1 MGP_C3HHeJ_G0031839.1 mouse_genomes_project 7 44610337 44623435 + MGP_C3HHeJ_P0083090 Zfp819 protein_coding protein_coding MGP_C3HHeJ_T0083091.1 MGP_C3HHeJ_G0031839.1 mouse_genomes_project 7 44613019 44623068 + MGP_C3HHeJ_P0083091 Zfp819 protein_coding protein_coding MGP_C3HHeJ_T0015498.1 MGP_C3HHeJ_G0013602.1 mouse_genomes_project 7 2933769 2933901 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082208.1 MGP_C3HHeJ_G0031639.1 mouse_genomes_project 7 27341254 27351060 + MGP_C3HHeJ_P0082208 Fbl protein_coding protein_coding MGP_C3HHeJ_T0082042.1 MGP_C3HHeJ_G0031595.1 mouse_genomes_project 7 25600870 25609655 - MGP_C3HHeJ_P0082042 protein_coding protein_coding MGP_C3HHeJ_T0008793.1 MGP_C3HHeJ_G0007095.1 mouse_genomes_project 7 65205929 65301782 - 4930554H23Rik lincRNA lincRNA MGP_C3HHeJ_T0005222.1 MGP_C3HHeJ_G0004423.1 mouse_genomes_project 7 131650675 131656162 - Gm44759 antisense antisense MGP_C3HHeJ_T0085095.1 MGP_C3HHeJ_G0032363.1 mouse_genomes_project 7 106812918 106813872 - MGP_C3HHeJ_P0085095 Olfr616 protein_coding protein_coding MGP_C3HHeJ_T0015515.1 MGP_C3HHeJ_G0013619.1 mouse_genomes_project 7 11948753 11949207 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082085.1 MGP_C3HHeJ_G0031609.1 mouse_genomes_project 7 26271094 26292558 - MGP_C3HHeJ_P0082085 Itpkc protein_coding protein_coding MGP_C3HHeJ_T0082086.1 MGP_C3HHeJ_G0031609.1 mouse_genomes_project 7 26271892 26276976 - Itpkc protein_coding processed_transcript MGP_C3HHeJ_T0082087.1 MGP_C3HHeJ_G0031609.1 mouse_genomes_project 7 26276488 26278378 - Itpkc protein_coding retained_intron MGP_C3HHeJ_T0082088.1 MGP_C3HHeJ_G0031609.1 mouse_genomes_project 7 26289673 26292591 - Itpkc protein_coding retained_intron MGP_C3HHeJ_T0015685.1 MGP_C3HHeJ_G0013789.1 mouse_genomes_project 7 104352445 104353370 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082276.1 MGP_C3HHeJ_G0031658.1 mouse_genomes_project 7 27905661 27912897 + MGP_C3HHeJ_P0082276 Fbxo27 protein_coding protein_coding MGP_C3HHeJ_T0082277.1 MGP_C3HHeJ_G0031658.1 mouse_genomes_project 7 27905851 27906327 + MGP_C3HHeJ_P0082277 Fbxo27 protein_coding protein_coding MGP_C3HHeJ_T0082278.1 MGP_C3HHeJ_G0031658.1 mouse_genomes_project 7 27905891 27912901 + MGP_C3HHeJ_P0082278 Fbxo27 protein_coding protein_coding MGP_C3HHeJ_T0082279.1 MGP_C3HHeJ_G0031658.1 mouse_genomes_project 7 27910209 27911520 + Fbxo27 protein_coding processed_transcript MGP_C3HHeJ_T0082221.1 MGP_C3HHeJ_G0031645.1 mouse_genomes_project 7 27478734 27485289 - MGP_C3HHeJ_P0082221 Timm50 protein_coding protein_coding MGP_C3HHeJ_T0082222.1 MGP_C3HHeJ_G0031645.1 mouse_genomes_project 7 27479040 27479881 - Timm50 protein_coding retained_intron MGP_C3HHeJ_T0082223.1 MGP_C3HHeJ_G0031645.1 mouse_genomes_project 7 27479644 27481235 - Timm50 protein_coding retained_intron MGP_C3HHeJ_T0082224.1 MGP_C3HHeJ_G0031645.1 mouse_genomes_project 7 27482722 27485254 - Timm50 protein_coding retained_intron MGP_C3HHeJ_T0082225.1 MGP_C3HHeJ_G0031645.1 mouse_genomes_project 7 27483433 27485273 - Timm50 protein_coding retained_intron MGP_C3HHeJ_T0082226.1 MGP_C3HHeJ_G0031645.1 mouse_genomes_project 7 27484130 27485156 - Timm50 protein_coding processed_transcript MGP_C3HHeJ_T0082342.1 MGP_C3HHeJ_G0031674.1 mouse_genomes_project 7 28266124 28302682 - MGP_C3HHeJ_P0082342 Ryr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082343.1 MGP_C3HHeJ_G0031674.1 mouse_genomes_project 7 28266125 28394218 - MGP_C3HHeJ_P0082343 Ryr1 protein_coding protein_coding MGP_C3HHeJ_T0082344.1 MGP_C3HHeJ_G0031674.1 mouse_genomes_project 7 28266129 28394218 - MGP_C3HHeJ_P0082344 Ryr1 protein_coding protein_coding MGP_C3HHeJ_T0082345.1 MGP_C3HHeJ_G0031674.1 mouse_genomes_project 7 28302989 28394082 - MGP_C3HHeJ_P0082345 Ryr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085194.1 MGP_C3HHeJ_G0032431.1 mouse_genomes_project 7 108216639 108217578 - MGP_C3HHeJ_P0085194 Olfr672 protein_coding protein_coding MGP_C3HHeJ_T0082019.1 MGP_C3HHeJ_G0031586.1 mouse_genomes_project 7 24804713 24837286 + MGP_C3HHeJ_P0082019 Cyp2b10 protein_coding protein_coding MGP_C3HHeJ_T0082020.1 MGP_C3HHeJ_G0031586.1 mouse_genomes_project 7 24804769 24837221 + MGP_C3HHeJ_P0082020 Cyp2b10 protein_coding protein_coding MGP_C3HHeJ_T0082021.1 MGP_C3HHeJ_G0031586.1 mouse_genomes_project 7 24823788 24824453 + Cyp2b10 protein_coding retained_intron MGP_C3HHeJ_T0099621.1 MGP_C3HHeJ_G0037815.1 mouse_genomes_project 7 145843662 145843758 - Gm22019 snRNA snRNA MGP_C3HHeJ_T0083998.1 MGP_C3HHeJ_G0032067.1 mouse_genomes_project 7 70230606 70270342 - MGP_C3HHeJ_P0083998 Pgpep1l protein_coding protein_coding MGP_C3HHeJ_T0087367.1 MGP_C3HHeJ_G0032959.1 mouse_genomes_project 7 147313734 147323281 + Mrpl23 protein_coding processed_transcript MGP_C3HHeJ_T0087368.1 MGP_C3HHeJ_G0032959.1 mouse_genomes_project 7 147313947 147323291 + MGP_C3HHeJ_P0087368 Mrpl23 protein_coding protein_coding MGP_C3HHeJ_T0087369.1 MGP_C3HHeJ_G0032959.1 mouse_genomes_project 7 147315457 147319833 + Mrpl23 protein_coding retained_intron MGP_C3HHeJ_T0087370.1 MGP_C3HHeJ_G0032959.1 mouse_genomes_project 7 147317039 147320454 + Mrpl23 protein_coding retained_intron MGP_C3HHeJ_T0084339.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83375338 83424183 - Sec11a protein_coding processed_transcript MGP_C3HHeJ_T0084340.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83378165 83424151 - MGP_C3HHeJ_P0084340 Sec11a protein_coding protein_coding MGP_C3HHeJ_T0084341.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387152 83399137 - Sec11a protein_coding processed_transcript MGP_C3HHeJ_T0084342.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387152 83397045 - Sec11a protein_coding retained_intron MGP_C3HHeJ_T0084343.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387152 83424418 - MGP_C3HHeJ_P0084343 Sec11a protein_coding protein_coding MGP_C3HHeJ_T0084344.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387341 83388106 - Sec11a protein_coding retained_intron MGP_C3HHeJ_T0084345.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387436 83424418 - MGP_C3HHeJ_P0084345 Sec11a protein_coding protein_coding MGP_C3HHeJ_T0084346.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387538 83424149 - Sec11a protein_coding processed_transcript MGP_C3HHeJ_T0084347.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83387864 83424418 - MGP_C3HHeJ_P0084347 Sec11a protein_coding protein_coding MGP_C3HHeJ_T0084348.1 MGP_C3HHeJ_G0032126.1 mouse_genomes_project 7 83392670 83424380 - Sec11a protein_coding retained_intron MGP_C3HHeJ_T0086902.1 MGP_C3HHeJ_G0032843.1 mouse_genomes_project 7 143606292 143622988 + MGP_C3HHeJ_P0086902 Dpysl4 protein_coding protein_coding MGP_C3HHeJ_T0086903.1 MGP_C3HHeJ_G0032843.1 mouse_genomes_project 7 143606293 143614757 + Dpysl4 protein_coding processed_transcript MGP_C3HHeJ_T0086904.1 MGP_C3HHeJ_G0032843.1 mouse_genomes_project 7 143606318 143622079 + Dpysl4 protein_coding retained_intron MGP_C3HHeJ_T0086905.1 MGP_C3HHeJ_G0032843.1 mouse_genomes_project 7 143606319 143622067 + Dpysl4 protein_coding retained_intron MGP_C3HHeJ_T0086906.1 MGP_C3HHeJ_G0032843.1 mouse_genomes_project 7 143608656 143614723 + MGP_C3HHeJ_P0086906 Dpysl4 protein_coding protein_coding MGP_C3HHeJ_T0086907.1 MGP_C3HHeJ_G0032843.1 mouse_genomes_project 7 143609538 143622061 + MGP_C3HHeJ_P0086907 Dpysl4 protein_coding protein_coding MGP_C3HHeJ_T0082679.1 MGP_C3HHeJ_G0031751.1 mouse_genomes_project 7 30272045 30276458 - MGP_C3HHeJ_P0082679 Ffar1 protein_coding protein_coding MGP_C3HHeJ_T0084483.1 MGP_C3HHeJ_G0032174.1 mouse_genomes_project 7 88961355 88962315 - MGP_C3HHeJ_P0084483 Olfr305 protein_coding protein_coding MGP_C3HHeJ_T0086919.1 MGP_C3HHeJ_G0032846.1 mouse_genomes_project 7 143780979 143799750 + MGP_C3HHeJ_P0086919 Pwwp2b protein_coding protein_coding MGP_C3HHeJ_T0086920.1 MGP_C3HHeJ_G0032846.1 mouse_genomes_project 7 143780979 143799750 + MGP_C3HHeJ_P0086920 Pwwp2b protein_coding protein_coding MGP_C3HHeJ_T0008797.1 MGP_C3HHeJ_G0007098.1 mouse_genomes_project 7 65923689 65930277 - Gm45054 lincRNA lincRNA MGP_C3HHeJ_T0002280.1 MGP_C3HHeJ_G0002200.1 mouse_genomes_project 7 138478117 138482575 - TEC TEC MGP_C3HHeJ_T0010790.1 MGP_C3HHeJ_G0008923.1 mouse_genomes_project 7 63401532 63401612 - Mir344d-2 miRNA miRNA MGP_C3HHeJ_T0015585.1 MGP_C3HHeJ_G0013689.1 mouse_genomes_project 7 41981292 41984674 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015637.1 MGP_C3HHeJ_G0013741.1 mouse_genomes_project 7 75872362 75873470 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085748.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123266872 123319257 + MGP_C3HHeJ_P0085748 Acsm2 protein_coding protein_coding MGP_C3HHeJ_T0085749.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123273750 123314395 + MGP_C3HHeJ_P0085749 Acsm2 protein_coding protein_coding MGP_C3HHeJ_T0085750.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123273965 123319257 + MGP_C3HHeJ_P0085750 Acsm2 protein_coding protein_coding MGP_C3HHeJ_T0085751.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123273969 123294295 + MGP_C3HHeJ_P0085751 Acsm2 protein_coding protein_coding MGP_C3HHeJ_T0085752.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123274043 123298020 + Acsm2 protein_coding processed_transcript MGP_C3HHeJ_T0085753.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123276633 123313803 + MGP_C3HHeJ_P0085753 Acsm2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085754.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123296760 123313964 + MGP_C3HHeJ_P0085754 Acsm2 protein_coding protein_coding MGP_C3HHeJ_T0085755.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123306645 123310348 + MGP_C3HHeJ_P0085755 Acsm2 protein_coding protein_coding MGP_C3HHeJ_T0085756.1 MGP_C3HHeJ_G0032611.1 mouse_genomes_project 7 123308664 123309254 + Acsm2 protein_coding retained_intron MGP_C3HHeJ_T0083710.1 MGP_C3HHeJ_G0032008.1 mouse_genomes_project 7 53061417 53147308 + MGP_C3HHeJ_P0083710 Ano5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0083711.1 MGP_C3HHeJ_G0032008.1 mouse_genomes_project 7 53062162 53152171 + MGP_C3HHeJ_P0083711 Ano5 protein_coding protein_coding MGP_C3HHeJ_T0082130.1 MGP_C3HHeJ_G0031617.1 mouse_genomes_project 7 26527175 26546186 + MGP_C3HHeJ_P0082130 Blvrb protein_coding protein_coding MGP_C3HHeJ_T0082131.1 MGP_C3HHeJ_G0031617.1 mouse_genomes_project 7 26527229 26546040 + MGP_C3HHeJ_P0082131 Blvrb protein_coding protein_coding MGP_C3HHeJ_T0082132.1 MGP_C3HHeJ_G0031617.1 mouse_genomes_project 7 26527251 26539067 + MGP_C3HHeJ_P0082132 Blvrb protein_coding protein_coding MGP_C3HHeJ_T0082133.1 MGP_C3HHeJ_G0031617.1 mouse_genomes_project 7 26531615 26546026 + MGP_C3HHeJ_P0082133 Blvrb protein_coding protein_coding MGP_C3HHeJ_T0082134.1 MGP_C3HHeJ_G0031617.1 mouse_genomes_project 7 26531641 26541660 + Blvrb protein_coding processed_transcript MGP_C3HHeJ_T0087250.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146180304 146230854 - MGP_C3HHeJ_P0087250 Chid1 protein_coding protein_coding MGP_C3HHeJ_T0087251.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146182564 146230816 - Chid1 protein_coding retained_intron MGP_C3HHeJ_T0087252.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146183215 146223936 - MGP_C3HHeJ_P0087252 Chid1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087253.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146183215 146230862 - MGP_C3HHeJ_P0087253 Chid1 protein_coding protein_coding MGP_C3HHeJ_T0087254.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146199029 146217698 - Chid1 protein_coding processed_transcript MGP_C3HHeJ_T0087255.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146202587 146230527 - MGP_C3HHeJ_P0087255 Chid1 protein_coding protein_coding MGP_C3HHeJ_T0087256.1 MGP_C3HHeJ_G0032934.1 mouse_genomes_project 7 146222908 146230829 - Chid1 protein_coding retained_intron MGP_C3HHeJ_T0087148.1 MGP_C3HHeJ_G0032920.1 mouse_genomes_project 7 145977920 146009150 - MGP_C3HHeJ_P0087148 Deaf1 protein_coding protein_coding MGP_C3HHeJ_T0087149.1 MGP_C3HHeJ_G0032920.1 mouse_genomes_project 7 145977930 146005898 - MGP_C3HHeJ_P0087149 Deaf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0102192.1 MGP_C3HHeJ_G0040156.1 mouse_genomes_project 7 13704475 13704769 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086942.1 MGP_C3HHeJ_G0032851.1 mouse_genomes_project 7 144484076 144512996 + MGP_C3HHeJ_P0086942 Kndc1 protein_coding protein_coding MGP_C3HHeJ_T0086943.1 MGP_C3HHeJ_G0032851.1 mouse_genomes_project 7 144484076 144530761 + MGP_C3HHeJ_P0086943 Kndc1 protein_coding protein_coding MGP_C3HHeJ_T0086944.1 MGP_C3HHeJ_G0032851.1 mouse_genomes_project 7 144484219 144503723 + MGP_C3HHeJ_P0086944 Kndc1 protein_coding protein_coding MGP_C3HHeJ_T0086945.1 MGP_C3HHeJ_G0032851.1 mouse_genomes_project 7 144512771 144530761 + Kndc1 protein_coding retained_intron MGP_C3HHeJ_T0083306.1 MGP_C3HHeJ_G0031891.1 mouse_genomes_project 7 45962253 45975755 - MGP_C3HHeJ_P0083306 Med25 protein_coding protein_coding MGP_C3HHeJ_T0008820.1 MGP_C3HHeJ_G0007114.1 mouse_genomes_project 7 73477999 73487467 + lincRNA lincRNA MGP_C3HHeJ_T0101482.1 MGP_C3HHeJ_G0039481.1 mouse_genomes_project 7 44973198 44995186 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101483.1 MGP_C3HHeJ_G0039481.1 mouse_genomes_project 7 44973200 44985119 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0015526.1 MGP_C3HHeJ_G0013630.1 mouse_genomes_project 7 15805688 15806207 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018120.1 MGP_C3HHeJ_G0015425.1 mouse_genomes_project 7 45277706 45298597 + Gm28496 processed_transcript processed_transcript MGP_C3HHeJ_T0018121.1 MGP_C3HHeJ_G0015425.1 mouse_genomes_project 7 45277754 45297765 + Gm28496 processed_transcript processed_transcript MGP_C3HHeJ_T0080806.1 MGP_C3HHeJ_G0031217.1 mouse_genomes_project 7 112858 145309 - MGP_C3HHeJ_P0080806 Nlrp12 protein_coding protein_coding MGP_C3HHeJ_T0080807.1 MGP_C3HHeJ_G0031217.1 mouse_genomes_project 7 134576 145436 - Nlrp12 protein_coding retained_intron MGP_C3HHeJ_T0085680.1 MGP_C3HHeJ_G0032593.1 mouse_genomes_project 7 121788211 121799004 - MGP_C3HHeJ_P0085680 Arl6ip1 protein_coding protein_coding MGP_C3HHeJ_T0085681.1 MGP_C3HHeJ_G0032593.1 mouse_genomes_project 7 121789578 121798450 - Arl6ip1 protein_coding processed_transcript MGP_C3HHeJ_T0085682.1 MGP_C3HHeJ_G0032593.1 mouse_genomes_project 7 121789626 121798918 - MGP_C3HHeJ_P0085682 Arl6ip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085683.1 MGP_C3HHeJ_G0032593.1 mouse_genomes_project 7 121790521 121798916 - MGP_C3HHeJ_P0085683 Arl6ip1 protein_coding protein_coding MGP_C3HHeJ_T0085684.1 MGP_C3HHeJ_G0032593.1 mouse_genomes_project 7 121790548 121798902 - MGP_C3HHeJ_P0085684 Arl6ip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085685.1 MGP_C3HHeJ_G0032593.1 mouse_genomes_project 7 121795672 121798914 - Arl6ip1 protein_coding retained_intron MGP_C3HHeJ_T0081281.1 MGP_C3HHeJ_G0031368.1 mouse_genomes_project 7 10748706 10749594 - MGP_C3HHeJ_P0081281 Vmn1r87 protein_coding protein_coding MGP_C3HHeJ_T0008722.1 MGP_C3HHeJ_G0007037.1 mouse_genomes_project 7 14603841 14605688 - Gm29442 lincRNA lincRNA MGP_C3HHeJ_T0099598.1 MGP_C3HHeJ_G0037792.1 mouse_genomes_project 7 111489876 111489934 - Gm25424 snRNA snRNA MGP_C3HHeJ_T0005107.1 MGP_C3HHeJ_G0004342.1 mouse_genomes_project 7 28426366 28427602 + 1110035H17Rik antisense pseudogene MGP_C3HHeJ_T0005108.1 MGP_C3HHeJ_G0004342.1 mouse_genomes_project 7 28426366 28427604 + 1110035H17Rik antisense antisense MGP_C3HHeJ_T0080900.1 MGP_C3HHeJ_G0031238.1 mouse_genomes_project 7 646940 652066 - MGP_C3HHeJ_P0080900 protein_coding protein_coding MGP_C3HHeJ_T0085220.1 MGP_C3HHeJ_G0032449.1 mouse_genomes_project 7 108835368 108839397 + MGP_C3HHeJ_P0085220 Smpd1 protein_coding protein_coding MGP_C3HHeJ_T0008822.1 MGP_C3HHeJ_G0007116.1 mouse_genomes_project 7 74076861 74091352 - Gm36633 lincRNA lincRNA MGP_C3HHeJ_T0084432.1 MGP_C3HHeJ_G0032151.1 mouse_genomes_project 7 85706989 85714255 + MGP_C3HHeJ_P0084432 protein_coding protein_coding MGP_C3HHeJ_T0002163.1 MGP_C3HHeJ_G0002084.1 mouse_genomes_project 7 23391213 23391451 + TEC TEC MGP_C3HHeJ_T0086782.1 MGP_C3HHeJ_G0032814.1 mouse_genomes_project 7 137181883 137208672 + MGP_C3HHeJ_P0086782 Fam175b protein_coding protein_coding MGP_C3HHeJ_T0086783.1 MGP_C3HHeJ_G0032814.1 mouse_genomes_project 7 137181895 137204708 + MGP_C3HHeJ_P0086783 Fam175b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086784.1 MGP_C3HHeJ_G0032814.1 mouse_genomes_project 7 137181907 137199558 + Fam175b protein_coding retained_intron MGP_C3HHeJ_T0086785.1 MGP_C3HHeJ_G0032814.1 mouse_genomes_project 7 137181907 137208669 + MGP_C3HHeJ_P0086785 Fam175b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086786.1 MGP_C3HHeJ_G0032814.1 mouse_genomes_project 7 137181965 137202441 + Fam175b protein_coding processed_transcript MGP_C3HHeJ_T0086787.1 MGP_C3HHeJ_G0032814.1 mouse_genomes_project 7 137203201 137208671 + Fam175b protein_coding retained_intron MGP_C3HHeJ_T0099569.1 MGP_C3HHeJ_G0037763.1 mouse_genomes_project 7 29741310 29741503 - Gm25259 snRNA snRNA MGP_C3HHeJ_T0015554.1 MGP_C3HHeJ_G0013658.1 mouse_genomes_project 7 27016990 27019846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102208.1 MGP_C3HHeJ_G0040171.1 mouse_genomes_project 7 30706432 30708632 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002261.1 MGP_C3HHeJ_G0002181.1 mouse_genomes_project 7 126328250 126330973 + TEC TEC MGP_C3HHeJ_T0099561.1 MGP_C3HHeJ_G0037755.1 mouse_genomes_project 7 10497838 10497945 + Gm26325 snRNA snRNA MGP_C3HHeJ_T0085176.1 MGP_C3HHeJ_G0032414.1 mouse_genomes_project 7 107736554 107737496 + MGP_C3HHeJ_P0085176 Olfr651 protein_coding protein_coding MGP_C3HHeJ_T0081098.1 MGP_C3HHeJ_G0031282.1 mouse_genomes_project 7 2051135 2055145 - MGP_C3HHeJ_P0081098 Zfp784 protein_coding protein_coding MGP_C3HHeJ_T0005104.1 MGP_C3HHeJ_G0004339.1 mouse_genomes_project 7 26586369 26592528 - Gm15541 antisense antisense MGP_C3HHeJ_T0086820.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138046313 138070308 - Uros protein_coding retained_intron MGP_C3HHeJ_T0086821.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138046426 138070172 - MGP_C3HHeJ_P0086821 Uros protein_coding protein_coding MGP_C3HHeJ_T0086822.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138046426 138070283 - MGP_C3HHeJ_P0086822 Uros protein_coding protein_coding MGP_C3HHeJ_T0086823.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138046435 138070495 - MGP_C3HHeJ_P0086823 Uros protein_coding protein_coding MGP_C3HHeJ_T0086824.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138047031 138058122 - Uros protein_coding processed_transcript MGP_C3HHeJ_T0086825.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138052204 138070273 - MGP_C3HHeJ_P0086825 Uros protein_coding protein_coding MGP_C3HHeJ_T0086826.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138063059 138063837 - MGP_C3HHeJ_P0086826 Uros protein_coding protein_coding MGP_C3HHeJ_T0086827.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138063113 138070271 - MGP_C3HHeJ_P0086827 Uros protein_coding protein_coding MGP_C3HHeJ_T0086828.1 MGP_C3HHeJ_G0032820.1 mouse_genomes_project 7 138063115 138071286 - MGP_C3HHeJ_P0086828 Uros protein_coding protein_coding MGP_C3HHeJ_T0015517.1 MGP_C3HHeJ_G0013621.1 mouse_genomes_project 7 12066586 12070283 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102309.1 MGP_C3HHeJ_G0040272.1 mouse_genomes_project 7 107278433 107279339 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102285.1 MGP_C3HHeJ_G0040248.1 mouse_genomes_project 7 88565394 88565771 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0082435.1 MGP_C3HHeJ_G0031694.1 mouse_genomes_project 7 29246949 29263613 - MGP_C3HHeJ_P0082435 Zfp27 protein_coding protein_coding MGP_C3HHeJ_T0082436.1 MGP_C3HHeJ_G0031694.1 mouse_genomes_project 7 29247331 29255832 - MGP_C3HHeJ_P0082436 Zfp27 protein_coding protein_coding MGP_C3HHeJ_T0082437.1 MGP_C3HHeJ_G0031694.1 mouse_genomes_project 7 29247332 29263145 - MGP_C3HHeJ_P0082437 Zfp27 protein_coding protein_coding MGP_C3HHeJ_T0082438.1 MGP_C3HHeJ_G0031694.1 mouse_genomes_project 7 29247332 29263573 - MGP_C3HHeJ_P0082438 Zfp27 protein_coding protein_coding MGP_C3HHeJ_T0082439.1 MGP_C3HHeJ_G0031694.1 mouse_genomes_project 7 29247695 29254221 - MGP_C3HHeJ_P0082439 Zfp27 protein_coding protein_coding MGP_C3HHeJ_T0082440.1 MGP_C3HHeJ_G0031694.1 mouse_genomes_project 7 29255580 29263101 - Zfp27 protein_coding processed_transcript MGP_C3HHeJ_T0102163.1 MGP_C3HHeJ_G0040127.1 mouse_genomes_project 7 9654323 9655601 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015719.1 MGP_C3HHeJ_G0013823.1 mouse_genomes_project 7 131167207 131168145 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005156.1 MGP_C3HHeJ_G0004378.1 mouse_genomes_project 7 80579210 80580334 + 4921513I08Rik antisense antisense MGP_C3HHeJ_T0002157.1 MGP_C3HHeJ_G0002078.1 mouse_genomes_project 7 1629079 1630374 + TEC TEC MGP_C3HHeJ_T0015596.1 MGP_C3HHeJ_G0013700.1 mouse_genomes_project 7 43979569 43979917 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082578.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958917 29960971 + U2af1l4 protein_coding processed_transcript MGP_C3HHeJ_T0082579.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958923 29960742 + U2af1l4 protein_coding processed_transcript MGP_C3HHeJ_T0082580.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958935 29960098 + MGP_C3HHeJ_P0082580 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082581.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958937 29960982 + MGP_C3HHeJ_P0082581 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082582.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958941 29960979 + MGP_C3HHeJ_P0082582 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082583.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958942 29960224 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082584.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958942 29960968 + MGP_C3HHeJ_P0082584 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082585.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958945 29960228 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082586.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958946 29960225 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082587.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958952 29960777 + MGP_C3HHeJ_P0082587 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082588.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958954 29960415 + MGP_C3HHeJ_P0082588 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082589.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958955 29960781 + MGP_C3HHeJ_P0082589 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082590.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958956 29959676 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082591.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958958 29960861 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082592.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958960 29963575 + MGP_C3HHeJ_P0082592 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082593.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958960 29960355 + MGP_C3HHeJ_P0082593 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082594.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958962 29960118 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082595.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958964 29960981 + MGP_C3HHeJ_P0082595 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082596.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958965 29959675 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082597.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958966 29960978 + U2af1l4 protein_coding processed_transcript MGP_C3HHeJ_T0082598.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958966 29963577 + MGP_C3HHeJ_P0082598 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082599.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958971 29963572 + MGP_C3HHeJ_P0082599 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082600.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958972 29960796 + MGP_C3HHeJ_P0082600 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082601.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958972 29960796 + MGP_C3HHeJ_P0082601 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082602.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958972 29960796 + MGP_C3HHeJ_P0082602 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082603.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958972 29960796 + MGP_C3HHeJ_P0082603 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082604.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958974 29960976 + U2af1l4 protein_coding processed_transcript MGP_C3HHeJ_T0082605.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958974 29960165 + MGP_C3HHeJ_P0082605 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0082606.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958975 29963016 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082607.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958976 29960093 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082608.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958983 29960789 + U2af1l4 protein_coding processed_transcript MGP_C3HHeJ_T0082609.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29958994 29960981 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082610.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29959009 29959972 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082611.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29959011 29960796 + MGP_C3HHeJ_P0082611 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082612.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29959013 29960796 + MGP_C3HHeJ_P0082612 U2af1l4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082613.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29959442 29960224 + U2af1l4 protein_coding retained_intron MGP_C3HHeJ_T0082614.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29959487 29959895 + U2af1l4 protein_coding processed_transcript MGP_C3HHeJ_T0082615.1 MGP_C3HHeJ_G0031732.1 mouse_genomes_project 7 29959495 29960796 + MGP_C3HHeJ_P0082615 U2af1l4 protein_coding protein_coding MGP_C3HHeJ_T0005241.1 MGP_C3HHeJ_G0004437.1 mouse_genomes_project 7 147784182 147803224 - Tspan32os antisense antisense MGP_C3HHeJ_T0005242.1 MGP_C3HHeJ_G0004437.1 mouse_genomes_project 7 147784182 147785992 - Tspan32os antisense antisense MGP_C3HHeJ_T0084164.1 MGP_C3HHeJ_G0032096.1 mouse_genomes_project 7 82081692 82099308 - MGP_C3HHeJ_P0084164 Kif7 protein_coding protein_coding MGP_C3HHeJ_T0084165.1 MGP_C3HHeJ_G0032096.1 mouse_genomes_project 7 82081693 82097774 - MGP_C3HHeJ_P0084165 Kif7 protein_coding protein_coding MGP_C3HHeJ_T0084166.1 MGP_C3HHeJ_G0032096.1 mouse_genomes_project 7 82081693 82097774 - MGP_C3HHeJ_P0084166 Kif7 protein_coding protein_coding MGP_C3HHeJ_T0084167.1 MGP_C3HHeJ_G0032096.1 mouse_genomes_project 7 82082117 82099257 - MGP_C3HHeJ_P0084167 Kif7 protein_coding protein_coding MGP_C3HHeJ_T0087010.1 MGP_C3HHeJ_G0032878.1 mouse_genomes_project 7 145106186 145112389 - MGP_C3HHeJ_P0087010 Olfr536 protein_coding protein_coding MGP_C3HHeJ_T0011606.1 MGP_C3HHeJ_G0009739.1 mouse_genomes_project 7 148046992 148047452 + Gm27395 misc_RNA misc_RNA MGP_C3HHeJ_T0015551.1 MGP_C3HHeJ_G0013655.1 mouse_genomes_project 7 25935984 25936561 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005101.1 MGP_C3HHeJ_G0004336.1 mouse_genomes_project 7 25255353 25258226 - Gm44963 antisense antisense MGP_C3HHeJ_T0084778.1 MGP_C3HHeJ_G0032259.1 mouse_genomes_project 7 102874896 102936875 + MGP_C3HHeJ_P0084778 Xrra1 protein_coding protein_coding MGP_C3HHeJ_T0087290.1 MGP_C3HHeJ_G0032941.1 mouse_genomes_project 7 146702333 146755715 - MGP_C3HHeJ_P0087290 Mob2 protein_coding protein_coding MGP_C3HHeJ_T0002225.1 MGP_C3HHeJ_G0002145.1 mouse_genomes_project 7 77922944 77924236 + TEC TEC MGP_C3HHeJ_T0086749.1 MGP_C3HHeJ_G0032803.1 mouse_genomes_project 7 135815160 135817219 + MGP_C3HHeJ_P0086749 Hmx3 protein_coding protein_coding MGP_C3HHeJ_T0002184.1 MGP_C3HHeJ_G0002105.1 mouse_genomes_project 7 44444316 44446061 + TEC TEC MGP_C3HHeJ_T0084615.1 MGP_C3HHeJ_G0032220.1 mouse_genomes_project 7 100193089 100215190 - MGP_C3HHeJ_P0084615 Usp35 protein_coding protein_coding MGP_C3HHeJ_T0084616.1 MGP_C3HHeJ_G0032220.1 mouse_genomes_project 7 100193089 100209155 - MGP_C3HHeJ_P0084616 Usp35 protein_coding protein_coding MGP_C3HHeJ_T0084617.1 MGP_C3HHeJ_G0032220.1 mouse_genomes_project 7 100193115 100199687 - Usp35 protein_coding processed_transcript MGP_C3HHeJ_T0084618.1 MGP_C3HHeJ_G0032220.1 mouse_genomes_project 7 100196168 100198718 - Usp35 protein_coding retained_intron MGP_C3HHeJ_T0084619.1 MGP_C3HHeJ_G0032220.1 mouse_genomes_project 7 100196283 100199688 - Usp35 protein_coding processed_transcript MGP_C3HHeJ_T0084620.1 MGP_C3HHeJ_G0032220.1 mouse_genomes_project 7 100202874 100207580 - Usp35 protein_coding retained_intron MGP_C3HHeJ_T0083312.1 MGP_C3HHeJ_G0031894.1 mouse_genomes_project 7 46034191 46050563 + MGP_C3HHeJ_P0083312 Tsks protein_coding protein_coding MGP_C3HHeJ_T0083313.1 MGP_C3HHeJ_G0031894.1 mouse_genomes_project 7 46034191 46050563 + MGP_C3HHeJ_P0083313 Tsks protein_coding protein_coding MGP_C3HHeJ_T0015572.1 MGP_C3HHeJ_G0013676.1 mouse_genomes_project 7 33991439 33992026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008837.1 MGP_C3HHeJ_G0007129.1 mouse_genomes_project 7 75817446 75824921 + Gm44737 lincRNA lincRNA MGP_C3HHeJ_T0086995.1 MGP_C3HHeJ_G0032865.1 mouse_genomes_project 7 144760610 144761686 - MGP_C3HHeJ_P0086995 Olfr522 protein_coding protein_coding MGP_C3HHeJ_T0015591.1 MGP_C3HHeJ_G0013695.1 mouse_genomes_project 7 43273685 43274435 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086456.1 MGP_C3HHeJ_G0032748.1 mouse_genomes_project 7 131786613 131801116 - MGP_C3HHeJ_P0086456 Ctf2 protein_coding protein_coding MGP_C3HHeJ_T0086457.1 MGP_C3HHeJ_G0032748.1 mouse_genomes_project 7 131786613 131794791 - MGP_C3HHeJ_P0086457 Ctf2 protein_coding protein_coding MGP_C3HHeJ_T0008819.1 MGP_C3HHeJ_G0007113.1 mouse_genomes_project 7 73459140 73498912 + Gm29295 lincRNA lincRNA MGP_C3HHeJ_T0087145.1 MGP_C3HHeJ_G0032918.1 mouse_genomes_project 7 145957305 145958108 - MGP_C3HHeJ_P0087145 Sct protein_coding protein_coding MGP_C3HHeJ_T0087146.1 MGP_C3HHeJ_G0032918.1 mouse_genomes_project 7 145957328 145958106 - MGP_C3HHeJ_P0087146 Sct protein_coding protein_coding MGP_C3HHeJ_T0102193.1 MGP_C3HHeJ_G0040157.1 mouse_genomes_project 7 13704489 13704745 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086750.1 MGP_C3HHeJ_G0032804.1 mouse_genomes_project 7 135821064 135828880 + MGP_C3HHeJ_P0086750 Hmx2 protein_coding protein_coding MGP_C3HHeJ_T0086751.1 MGP_C3HHeJ_G0032804.1 mouse_genomes_project 7 135826351 135828880 + MGP_C3HHeJ_P0086751 Hmx2 protein_coding protein_coding MGP_C3HHeJ_T0083353.1 MGP_C3HHeJ_G0031915.1 mouse_genomes_project 7 46281903 46303001 - MGP_C3HHeJ_P0083353 Ccdc155 protein_coding protein_coding MGP_C3HHeJ_T0083354.1 MGP_C3HHeJ_G0031915.1 mouse_genomes_project 7 46282207 46288314 - Ccdc155 protein_coding retained_intron MGP_C3HHeJ_T0081661.1 MGP_C3HHeJ_G0031489.1 mouse_genomes_project 7 17970209 17996190 - MGP_C3HHeJ_P0081661 Clasrp protein_coding protein_coding MGP_C3HHeJ_T0098539.1 MGP_C3HHeJ_G0036740.1 mouse_genomes_project 7 80887719 80902214 - Gm44606 sense_intronic sense_intronic MGP_C3HHeJ_T0085763.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123500426 123526306 + MGP_C3HHeJ_P0085763 Acsm3 protein_coding protein_coding MGP_C3HHeJ_T0085764.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123500426 123526310 + MGP_C3HHeJ_P0085764 Acsm3 protein_coding protein_coding MGP_C3HHeJ_T0085765.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123500427 123526308 + MGP_C3HHeJ_P0085765 Acsm3 protein_coding protein_coding MGP_C3HHeJ_T0085766.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123500427 123528930 + MGP_C3HHeJ_P0085766 Acsm3 protein_coding protein_coding MGP_C3HHeJ_T0085767.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123507822 123526313 + MGP_C3HHeJ_P0085767 Acsm3 protein_coding protein_coding MGP_C3HHeJ_T0085770.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123516039 123520674 + Acsm3 protein_coding retained_intron MGP_C3HHeJ_T0085771.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123518550 123522435 + Acsm3 protein_coding retained_intron MGP_C3HHeJ_T0085772.1 MGP_C3HHeJ_G0032615.1 mouse_genomes_project 7 123522157 123522476 + Acsm3 protein_coding retained_intron MGP_C3HHeJ_T0081733.1 MGP_C3HHeJ_G0031512.1 mouse_genomes_project 7 22093114 22094114 - MGP_C3HHeJ_P0081733 protein_coding protein_coding MGP_C3HHeJ_T0084454.1 MGP_C3HHeJ_G0032158.1 mouse_genomes_project 7 86459969 86464472 - MGP_C3HHeJ_P0084454 Mesdc1 protein_coding protein_coding MGP_C3HHeJ_T0002278.1 MGP_C3HHeJ_G0002198.1 mouse_genomes_project 7 132673523 132674133 + TEC TEC MGP_C3HHeJ_T0010768.1 MGP_C3HHeJ_G0008901.1 mouse_genomes_project 7 29474277 29474373 - Gm23368 miRNA miRNA MGP_C3HHeJ_T0002274.1 MGP_C3HHeJ_G0002194.1 mouse_genomes_project 7 131868833 131871506 - TEC TEC MGP_C3HHeJ_T0008829.1 MGP_C3HHeJ_G0007123.1 mouse_genomes_project 7 75340848 75341228 - Gm28746 lincRNA lincRNA MGP_C3HHeJ_T0087232.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146145506 146151019 + MGP_C3HHeJ_P0087232 Cracr2b protein_coding protein_coding MGP_C3HHeJ_T0087233.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146146307 146149440 + MGP_C3HHeJ_P0087233 Cracr2b protein_coding protein_coding MGP_C3HHeJ_T0087234.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146146372 146147873 + MGP_C3HHeJ_P0087234 Cracr2b protein_coding protein_coding MGP_C3HHeJ_T0087235.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146147521 146149140 + MGP_C3HHeJ_P0087235 Cracr2b protein_coding protein_coding MGP_C3HHeJ_T0087236.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146147821 146150478 + MGP_C3HHeJ_P0087236 Cracr2b protein_coding protein_coding MGP_C3HHeJ_T0087237.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146148454 146149243 + Cracr2b protein_coding retained_intron MGP_C3HHeJ_T0087238.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146149504 146150083 + Cracr2b protein_coding retained_intron MGP_C3HHeJ_T0087239.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146149638 146150764 + Cracr2b protein_coding retained_intron MGP_C3HHeJ_T0087240.1 MGP_C3HHeJ_G0032930.1 mouse_genomes_project 7 146150079 146151019 + MGP_C3HHeJ_P0087240 Cracr2b protein_coding protein_coding MGP_C3HHeJ_T0098540.1 MGP_C3HHeJ_G0036741.1 mouse_genomes_project 7 92035305 92069213 - sense_intronic sense_intronic MGP_C3HHeJ_T0010800.1 MGP_C3HHeJ_G0008933.1 mouse_genomes_project 7 63619129 63619224 - Mir344 miRNA miRNA MGP_C3HHeJ_T0005155.1 MGP_C3HHeJ_G0004377.1 mouse_genomes_project 7 76614204 76632113 + Gm7580 antisense antisense MGP_C3HHeJ_T0005082.1 MGP_C3HHeJ_G0004323.1 mouse_genomes_project 7 17335796 17336562 - Gm45058 antisense antisense MGP_C3HHeJ_T0102220.1 MGP_C3HHeJ_G0040183.1 mouse_genomes_project 7 33967007 33968189 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084407.1 MGP_C3HHeJ_G0032145.1 mouse_genomes_project 7 84497377 84522964 - MGP_C3HHeJ_P0084407 Bnc1 protein_coding protein_coding MGP_C3HHeJ_T0008764.1 MGP_C3HHeJ_G0007075.1 mouse_genomes_project 7 38338161 38350040 - Gm45106 lincRNA lincRNA MGP_C3HHeJ_T0008731.1 MGP_C3HHeJ_G0007045.1 mouse_genomes_project 7 23384703 23386519 + Gm4598 lincRNA lincRNA MGP_C3HHeJ_T0100868.1 MGP_C3HHeJ_G0039062.1 mouse_genomes_project 7 146133027 146133164 + Snora52 snoRNA snoRNA MGP_C3HHeJ_T0085341.1 MGP_C3HHeJ_G0032489.1 mouse_genomes_project 7 110481419 110514580 + MGP_C3HHeJ_P0085341 Nlrp14 protein_coding protein_coding MGP_C3HHeJ_T0085342.1 MGP_C3HHeJ_G0032489.1 mouse_genomes_project 7 110503066 110514589 + MGP_C3HHeJ_P0085342 Nlrp14 protein_coding protein_coding MGP_C3HHeJ_T0002228.1 MGP_C3HHeJ_G0002148.1 mouse_genomes_project 7 78863307 78864258 + TEC TEC MGP_C3HHeJ_T0099591.1 MGP_C3HHeJ_G0037785.1 mouse_genomes_project 7 94114859 94114965 - Gm22080 snRNA snRNA MGP_C3HHeJ_T0100825.1 MGP_C3HHeJ_G0039019.1 mouse_genomes_project 7 59636704 59636838 + Gm23911 snoRNA snoRNA MGP_C3HHeJ_T0010831.1 MGP_C3HHeJ_G0008964.1 mouse_genomes_project 7 131052761 131052851 - Gm44343 miRNA miRNA MGP_C3HHeJ_T0102210.1 MGP_C3HHeJ_G0040173.1 mouse_genomes_project 7 31020572 31021825 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083307.1 MGP_C3HHeJ_G0031892.1 mouse_genomes_project 7 45979437 45983999 + MGP_C3HHeJ_P0083307 Fuz protein_coding protein_coding MGP_C3HHeJ_T0081938.1 MGP_C3HHeJ_G0031567.1 mouse_genomes_project 7 24129249 24131932 + Tmem145 protein_coding retained_intron MGP_C3HHeJ_T0081939.1 MGP_C3HHeJ_G0031567.1 mouse_genomes_project 7 24129251 24140333 + MGP_C3HHeJ_P0081939 Tmem145 protein_coding protein_coding MGP_C3HHeJ_T0081940.1 MGP_C3HHeJ_G0031567.1 mouse_genomes_project 7 24129251 24140320 + MGP_C3HHeJ_P0081940 Tmem145 protein_coding protein_coding MGP_C3HHeJ_T0081941.1 MGP_C3HHeJ_G0031567.1 mouse_genomes_project 7 24139177 24140330 + Tmem145 protein_coding retained_intron MGP_C3HHeJ_T0084753.1 MGP_C3HHeJ_G0032251.1 mouse_genomes_project 7 102450254 102456193 - MGP_C3HHeJ_P0084753 Rps3 protein_coding protein_coding MGP_C3HHeJ_T0084754.1 MGP_C3HHeJ_G0032251.1 mouse_genomes_project 7 102450262 102456113 - MGP_C3HHeJ_P0084754 Rps3 protein_coding protein_coding MGP_C3HHeJ_T0084755.1 MGP_C3HHeJ_G0032251.1 mouse_genomes_project 7 102451320 102456112 - Rps3 protein_coding retained_intron MGP_C3HHeJ_T0084756.1 MGP_C3HHeJ_G0032251.1 mouse_genomes_project 7 102452139 102456096 - Rps3 protein_coding retained_intron MGP_C3HHeJ_T0081824.1 MGP_C3HHeJ_G0031540.1 mouse_genomes_project 7 23304101 23307627 - MGP_C3HHeJ_P0081824 Zfp575 protein_coding protein_coding MGP_C3HHeJ_T0083869.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66384451 66629392 + MGP_C3HHeJ_P0083869 Apba2 protein_coding protein_coding MGP_C3HHeJ_T0083870.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66384694 66566344 + MGP_C3HHeJ_P0083870 Apba2 protein_coding protein_coding MGP_C3HHeJ_T0083871.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66384883 66566408 + MGP_C3HHeJ_P0083871 Apba2 protein_coding protein_coding MGP_C3HHeJ_T0083872.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66508471 66629372 + MGP_C3HHeJ_P0083872 Apba2 protein_coding protein_coding MGP_C3HHeJ_T0083873.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66602157 66617269 + Apba2 protein_coding processed_transcript MGP_C3HHeJ_T0083874.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66616589 66628888 + Apba2 protein_coding processed_transcript MGP_C3HHeJ_T0083875.1 MGP_C3HHeJ_G0032043.1 mouse_genomes_project 7 66617333 66628919 + MGP_C3HHeJ_P0083875 Apba2 protein_coding protein_coding MGP_C3HHeJ_T0085976.1 MGP_C3HHeJ_G0032664.1 mouse_genomes_project 7 129371942 129389511 + MGP_C3HHeJ_P0085976 Kdm8 protein_coding protein_coding MGP_C3HHeJ_T0085977.1 MGP_C3HHeJ_G0032664.1 mouse_genomes_project 7 129371950 129387263 + MGP_C3HHeJ_P0085977 Kdm8 protein_coding protein_coding MGP_C3HHeJ_T0083473.1 MGP_C3HHeJ_G0031940.1 mouse_genomes_project 7 46755708 46761555 + MGP_C3HHeJ_P0083473 Izumo1 protein_coding protein_coding MGP_C3HHeJ_T0083474.1 MGP_C3HHeJ_G0031940.1 mouse_genomes_project 7 46758284 46763136 + Izumo1 protein_coding retained_intron MGP_C3HHeJ_T0005142.1 MGP_C3HHeJ_G0004368.1 mouse_genomes_project 7 46764979 46767010 - antisense antisense MGP_C3HHeJ_T0005143.1 MGP_C3HHeJ_G0004368.1 mouse_genomes_project 7 46766868 46767278 - antisense antisense MGP_C3HHeJ_T0015618.1 MGP_C3HHeJ_G0013722.1 mouse_genomes_project 7 58333788 58334800 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100860.1 MGP_C3HHeJ_G0039054.1 mouse_genomes_project 7 122533754 122533868 + Gm26147 snoRNA snoRNA MGP_C3HHeJ_T0084374.1 MGP_C3HHeJ_G0032133.1 mouse_genomes_project 7 83966190 83971087 - Ap3b2 protein_coding retained_intron MGP_C3HHeJ_T0084375.1 MGP_C3HHeJ_G0032133.1 mouse_genomes_project 7 83966192 84000842 - MGP_C3HHeJ_P0084375 Ap3b2 protein_coding protein_coding MGP_C3HHeJ_T0084376.1 MGP_C3HHeJ_G0032133.1 mouse_genomes_project 7 83980183 84000623 - Ap3b2 protein_coding retained_intron MGP_C3HHeJ_T0084377.1 MGP_C3HHeJ_G0032133.1 mouse_genomes_project 7 83983919 83985207 - Ap3b2 protein_coding processed_transcript MGP_C3HHeJ_T0084378.1 MGP_C3HHeJ_G0032133.1 mouse_genomes_project 7 83986442 84000700 - MGP_C3HHeJ_P0084378 Ap3b2 protein_coding protein_coding MGP_C3HHeJ_T0010840.1 MGP_C3HHeJ_G0008973.1 mouse_genomes_project 7 144362022 144362129 + Mir6401 miRNA miRNA MGP_C3HHeJ_T0011595.1 MGP_C3HHeJ_G0009728.1 mouse_genomes_project 7 93838024 93838234 - Gm27470 misc_RNA misc_RNA MGP_C3HHeJ_T0015623.1 MGP_C3HHeJ_G0013727.1 mouse_genomes_project 7 58624355 58625755 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0083512.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46932279 46955895 + MGP_C3HHeJ_P0083512 Lmtk3 protein_coding protein_coding MGP_C3HHeJ_T0083513.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46932342 46939513 + MGP_C3HHeJ_P0083513 Lmtk3 protein_coding protein_coding MGP_C3HHeJ_T0083514.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46932488 46955860 + MGP_C3HHeJ_P0083514 Lmtk3 protein_coding protein_coding MGP_C3HHeJ_T0083515.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46933966 46955895 + MGP_C3HHeJ_P0083515 Lmtk3 protein_coding protein_coding MGP_C3HHeJ_T0083516.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46933973 46936535 + MGP_C3HHeJ_P0083516 Lmtk3 protein_coding protein_coding MGP_C3HHeJ_T0083517.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46934096 46936346 + Lmtk3 protein_coding retained_intron MGP_C3HHeJ_T0083518.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46935144 46941160 + MGP_C3HHeJ_P0083518 Lmtk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083519.1 MGP_C3HHeJ_G0031953.1 mouse_genomes_project 7 46936490 46941199 + MGP_C3HHeJ_P0083519 Lmtk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082677.1 MGP_C3HHeJ_G0031750.1 mouse_genomes_project 7 30268985 30270834 - MGP_C3HHeJ_P0082677 Ffar3 protein_coding protein_coding MGP_C3HHeJ_T0082678.1 MGP_C3HHeJ_G0031750.1 mouse_genomes_project 7 30269589 30270823 - MGP_C3HHeJ_P0082678 Ffar3 protein_coding protein_coding MGP_C3HHeJ_T0086539.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132053459 132072208 + MGP_C3HHeJ_P0086539 Fus protein_coding protein_coding MGP_C3HHeJ_T0086540.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132053492 132068539 + MGP_C3HHeJ_P0086540 Fus protein_coding protein_coding MGP_C3HHeJ_T0086541.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132053493 132060834 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086542.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132053493 132058720 + Fus protein_coding processed_transcript MGP_C3HHeJ_T0086543.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132053493 132068536 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086544.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132053510 132068539 + MGP_C3HHeJ_P0086544 Fus protein_coding protein_coding MGP_C3HHeJ_T0086545.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132057625 132060834 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086546.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132058381 132063778 + Fus protein_coding processed_transcript MGP_C3HHeJ_T0086547.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132060649 132064734 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086548.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132061481 132063340 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086549.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132062124 132068066 + MGP_C3HHeJ_P0086549 Fus protein_coding protein_coding MGP_C3HHeJ_T0086550.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132062190 132066743 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086551.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132063820 132067956 + MGP_C3HHeJ_P0086551 Fus protein_coding protein_coding MGP_C3HHeJ_T0086552.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132064638 132066693 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086553.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132066722 132068336 + Fus protein_coding retained_intron MGP_C3HHeJ_T0086554.1 MGP_C3HHeJ_G0032765.1 mouse_genomes_project 7 132069585 132072208 + MGP_C3HHeJ_P0086554 Fus protein_coding protein_coding MGP_C3HHeJ_T0008760.1 MGP_C3HHeJ_G0007071.1 mouse_genomes_project 7 37391868 37395235 - Gm28076 lincRNA lincRNA MGP_C3HHeJ_T0084485.1 MGP_C3HHeJ_G0032176.1 mouse_genomes_project 7 88993474 88994514 - MGP_C3HHeJ_P0084485 Olfr303 protein_coding protein_coding MGP_C3HHeJ_T0085077.1 MGP_C3HHeJ_G0032346.1 mouse_genomes_project 7 106400866 106401811 - MGP_C3HHeJ_P0085077 Olfr591 protein_coding protein_coding MGP_C3HHeJ_T0083728.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368887 57374154 + MGP_C3HHeJ_P0083728 Siglech protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083729.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368893 57375107 + MGP_C3HHeJ_P0083729 Siglech protein_coding protein_coding MGP_C3HHeJ_T0083730.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368893 57375107 + MGP_C3HHeJ_P0083730 Siglech protein_coding protein_coding MGP_C3HHeJ_T0083731.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368935 57380444 + MGP_C3HHeJ_P0083731 Siglech protein_coding protein_coding MGP_C3HHeJ_T0083732.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368935 57380245 + MGP_C3HHeJ_P0083732 Siglech protein_coding protein_coding MGP_C3HHeJ_T0083733.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368945 57379229 + MGP_C3HHeJ_P0083733 Siglech protein_coding protein_coding MGP_C3HHeJ_T0083734.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368945 57379183 + MGP_C3HHeJ_P0083734 Siglech protein_coding protein_coding MGP_C3HHeJ_T0083735.1 MGP_C3HHeJ_G0032015.1 mouse_genomes_project 7 57368970 57380536 + MGP_C3HHeJ_P0083735 Siglech protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002252.1 MGP_C3HHeJ_G0002172.1 mouse_genomes_project 7 121034884 121036785 + TEC TEC MGP_C3HHeJ_T0083903.1 MGP_C3HHeJ_G0032049.1 mouse_genomes_project 7 67757487 67852705 + MGP_C3HHeJ_P0083903 Pcsk6 protein_coding protein_coding MGP_C3HHeJ_T0083904.1 MGP_C3HHeJ_G0032049.1 mouse_genomes_project 7 67757782 67956497 + MGP_C3HHeJ_P0083904 Pcsk6 protein_coding protein_coding MGP_C3HHeJ_T0083905.1 MGP_C3HHeJ_G0032049.1 mouse_genomes_project 7 67757889 67956445 + MGP_C3HHeJ_P0083905 Pcsk6 protein_coding protein_coding MGP_C3HHeJ_T0083906.1 MGP_C3HHeJ_G0032049.1 mouse_genomes_project 7 67758185 67956451 + MGP_C3HHeJ_P0083906 Pcsk6 protein_coding protein_coding MGP_C3HHeJ_T0083907.1 MGP_C3HHeJ_G0032049.1 mouse_genomes_project 7 67852732 67862907 + Pcsk6 protein_coding retained_intron MGP_C3HHeJ_T0083908.1 MGP_C3HHeJ_G0032049.1 mouse_genomes_project 7 67944206 67949639 + Pcsk6 protein_coding retained_intron MGP_C3HHeJ_T0085434.1 MGP_C3HHeJ_G0032546.1 mouse_genomes_project 7 113207662 113232683 - MGP_C3HHeJ_P0085434 Nrip3 protein_coding protein_coding MGP_C3HHeJ_T0085435.1 MGP_C3HHeJ_G0032546.1 mouse_genomes_project 7 113207666 113232203 - MGP_C3HHeJ_P0085435 Nrip3 protein_coding protein_coding MGP_C3HHeJ_T0102314.1 MGP_C3HHeJ_G0040277.1 mouse_genomes_project 7 107877732 107878104 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085075.1 MGP_C3HHeJ_G0032344.1 mouse_genomes_project 7 106348926 106349880 - MGP_C3HHeJ_P0085075 Olfr586 protein_coding protein_coding MGP_C3HHeJ_T0015727.1 MGP_C3HHeJ_G0013831.1 mouse_genomes_project 7 132827764 132828214 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081740.1 MGP_C3HHeJ_G0031519.1 mouse_genomes_project 7 22741488 22742546 + MGP_C3HHeJ_P0081740 Vmn1r183 protein_coding protein_coding MGP_C3HHeJ_T0086742.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135686736 135723996 + MGP_C3HHeJ_P0086742 Acadsb protein_coding protein_coding MGP_C3HHeJ_T0086743.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135686838 135722548 + MGP_C3HHeJ_P0086743 Acadsb protein_coding protein_coding MGP_C3HHeJ_T0086744.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135700014 135705564 + Acadsb protein_coding retained_intron MGP_C3HHeJ_T0086745.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135700049 135704368 + Acadsb protein_coding retained_intron MGP_C3HHeJ_T0086746.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135704161 135707716 + Acadsb protein_coding retained_intron MGP_C3HHeJ_T0086747.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135705388 135723994 + Acadsb protein_coding retained_intron MGP_C3HHeJ_T0086748.1 MGP_C3HHeJ_G0032802.1 mouse_genomes_project 7 135709821 135715309 + Acadsb protein_coding retained_intron MGP_C3HHeJ_T0008783.1 MGP_C3HHeJ_G0007086.1 mouse_genomes_project 7 44563925 44564283 + Gm44818 lincRNA lincRNA MGP_C3HHeJ_T0085811.1 MGP_C3HHeJ_G0032627.1 mouse_genomes_project 7 124165187 124233523 + MGP_C3HHeJ_P0085811 Abca16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085812.1 MGP_C3HHeJ_G0032627.1 mouse_genomes_project 7 124178866 124288581 + MGP_C3HHeJ_P0085812 Abca16 protein_coding protein_coding MGP_C3HHeJ_T0085813.1 MGP_C3HHeJ_G0032627.1 mouse_genomes_project 7 124178866 124288581 + MGP_C3HHeJ_P0085813 Abca16 protein_coding protein_coding MGP_C3HHeJ_T0085814.1 MGP_C3HHeJ_G0032627.1 mouse_genomes_project 7 124229245 124242537 + Abca16 protein_coding retained_intron MGP_C3HHeJ_T0081729.1 MGP_C3HHeJ_G0031510.1 mouse_genomes_project 7 21897190 21961458 + MGP_C3HHeJ_P0081729 Nlrp5 protein_coding protein_coding MGP_C3HHeJ_T0081730.1 MGP_C3HHeJ_G0031510.1 mouse_genomes_project 7 21897202 21961459 + MGP_C3HHeJ_P0081730 Nlrp5 protein_coding protein_coding MGP_C3HHeJ_T0081731.1 MGP_C3HHeJ_G0031510.1 mouse_genomes_project 7 21916250 21961459 + MGP_C3HHeJ_P0081731 Nlrp5 protein_coding protein_coding MGP_C3HHeJ_T0002241.1 MGP_C3HHeJ_G0002161.1 mouse_genomes_project 7 82222347 82223626 - TEC TEC MGP_C3HHeJ_T0015673.1 MGP_C3HHeJ_G0013777.1 mouse_genomes_project 7 100488866 100489574 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008939.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130975033 130978822 - lincRNA lincRNA MGP_C3HHeJ_T0008940.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130975936 130979131 - lincRNA lincRNA MGP_C3HHeJ_T0008941.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130975936 130979410 - lincRNA lincRNA MGP_C3HHeJ_T0008942.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130975936 130979149 - lincRNA lincRNA MGP_C3HHeJ_T0008943.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130975937 130979100 - lincRNA lincRNA MGP_C3HHeJ_T0008944.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130975938 130979158 - lincRNA lincRNA MGP_C3HHeJ_T0008945.1 MGP_C3HHeJ_G0007192.1 mouse_genomes_project 7 130978165 130979364 - lincRNA lincRNA MGP_C3HHeJ_T0015582.1 MGP_C3HHeJ_G0013686.1 mouse_genomes_project 7 41773477 41774189 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008842.1 MGP_C3HHeJ_G0007133.1 mouse_genomes_project 7 76232440 76241478 - Gm45004 lincRNA lincRNA MGP_C3HHeJ_T0010810.1 MGP_C3HHeJ_G0008943.1 mouse_genomes_project 7 76010801 76010853 + Mir7234 miRNA miRNA MGP_C3HHeJ_T0010761.1 MGP_C3HHeJ_G0008894.1 mouse_genomes_project 7 26235353 26235441 - Mir3101 miRNA miRNA MGP_C3HHeJ_T0085971.1 MGP_C3HHeJ_G0032662.1 mouse_genomes_project 7 127378165 127403431 - MGP_C3HHeJ_P0085971 Zkscan2 protein_coding protein_coding MGP_C3HHeJ_T0085972.1 MGP_C3HHeJ_G0032662.1 mouse_genomes_project 7 127380525 127383711 - Zkscan2 protein_coding retained_intron MGP_C3HHeJ_T0085973.1 MGP_C3HHeJ_G0032662.1 mouse_genomes_project 7 127382923 127387973 - MGP_C3HHeJ_P0085973 Zkscan2 protein_coding protein_coding MGP_C3HHeJ_T0085974.1 MGP_C3HHeJ_G0032662.1 mouse_genomes_project 7 127397209 127403431 - MGP_C3HHeJ_P0085974 Zkscan2 protein_coding protein_coding MGP_C3HHeJ_T0081196.1 MGP_C3HHeJ_G0031335.1 mouse_genomes_project 7 9145542 9146463 - MGP_C3HHeJ_P0081196 Vmn1r72 protein_coding protein_coding MGP_C3HHeJ_T0082703.1 MGP_C3HHeJ_G0031754.1 mouse_genomes_project 7 30347257 30387655 - Usf2 protein_coding processed_transcript MGP_C3HHeJ_T0082704.1 MGP_C3HHeJ_G0031754.1 mouse_genomes_project 7 30347257 30387655 - MGP_C3HHeJ_P0082704 Usf2 protein_coding protein_coding MGP_C3HHeJ_T0082705.1 MGP_C3HHeJ_G0031754.1 mouse_genomes_project 7 30347257 30387655 - MGP_C3HHeJ_P0082705 Usf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082706.1 MGP_C3HHeJ_G0031754.1 mouse_genomes_project 7 30347428 30386359 - Usf2 protein_coding retained_intron MGP_C3HHeJ_T0082707.1 MGP_C3HHeJ_G0031754.1 mouse_genomes_project 7 30386835 30387559 - Usf2 protein_coding processed_transcript MGP_C3HHeJ_T0081481.1 MGP_C3HHeJ_G0031429.1 mouse_genomes_project 7 15046483 15082639 - MGP_C3HHeJ_P0081481 Hif3a protein_coding protein_coding MGP_C3HHeJ_T0081482.1 MGP_C3HHeJ_G0031429.1 mouse_genomes_project 7 15050704 15074940 - MGP_C3HHeJ_P0081482 Hif3a protein_coding protein_coding MGP_C3HHeJ_T0081483.1 MGP_C3HHeJ_G0031429.1 mouse_genomes_project 7 15064298 15066747 - MGP_C3HHeJ_P0081483 Hif3a protein_coding protein_coding MGP_C3HHeJ_T0081484.1 MGP_C3HHeJ_G0031429.1 mouse_genomes_project 7 15070212 15082596 - MGP_C3HHeJ_P0081484 Hif3a protein_coding protein_coding MGP_C3HHeJ_T0083238.1 MGP_C3HHeJ_G0031878.1 mouse_genomes_project 7 45648071 45663032 + MGP_C3HHeJ_P0083238 Kcnc3 protein_coding protein_coding MGP_C3HHeJ_T0083239.1 MGP_C3HHeJ_G0031878.1 mouse_genomes_project 7 45648071 45663032 + MGP_C3HHeJ_P0083239 Kcnc3 protein_coding protein_coding MGP_C3HHeJ_T0083240.1 MGP_C3HHeJ_G0031878.1 mouse_genomes_project 7 45648305 45663038 + MGP_C3HHeJ_P0083240 Kcnc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0005151.1 MGP_C3HHeJ_G0004374.1 mouse_genomes_project 7 74246639 74249440 + Gm45107 antisense antisense MGP_C3HHeJ_T0085187.1 MGP_C3HHeJ_G0032424.1 mouse_genomes_project 7 107885724 107886688 + MGP_C3HHeJ_P0085187 Olfr661 protein_coding protein_coding MGP_C3HHeJ_T0010825.1 MGP_C3HHeJ_G0008958.1 mouse_genomes_project 7 116257277 116257406 + Gm44462 miRNA miRNA MGP_C3HHeJ_T0081910.1 MGP_C3HHeJ_G0031562.1 mouse_genomes_project 7 24045252 24054846 - MGP_C3HHeJ_P0081910 Gsk3a protein_coding protein_coding MGP_C3HHeJ_T0081911.1 MGP_C3HHeJ_G0031562.1 mouse_genomes_project 7 24045252 24054846 - MGP_C3HHeJ_P0081911 Gsk3a protein_coding protein_coding MGP_C3HHeJ_T0081912.1 MGP_C3HHeJ_G0031562.1 mouse_genomes_project 7 24046459 24048239 - Gsk3a protein_coding retained_intron MGP_C3HHeJ_T0005215.1 MGP_C3HHeJ_G0004417.1 mouse_genomes_project 7 127873639 127887097 - Gm27040 antisense antisense MGP_C3HHeJ_T0081499.1 MGP_C3HHeJ_G0031439.1 mouse_genomes_project 7 16424652 16449738 + MGP_C3HHeJ_P0081499 Mill1 protein_coding protein_coding MGP_C3HHeJ_T0081387.1 MGP_C3HHeJ_G0031404.1 mouse_genomes_project 7 14175467 14187931 - MGP_C3HHeJ_P0081387 C5ar2 protein_coding protein_coding MGP_C3HHeJ_T0081388.1 MGP_C3HHeJ_G0031404.1 mouse_genomes_project 7 14175467 14190238 - MGP_C3HHeJ_P0081388 C5ar2 protein_coding protein_coding MGP_C3HHeJ_T0015511.1 MGP_C3HHeJ_G0013615.1 mouse_genomes_project 7 11515538 11517133 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081158.1 MGP_C3HHeJ_G0031309.1 mouse_genomes_project 7 3528863 3529808 + MGP_C3HHeJ_P0081158 Olfr1336 protein_coding protein_coding MGP_C3HHeJ_T0082209.1 MGP_C3HHeJ_G0031640.1 mouse_genomes_project 7 27351259 27359065 + MGP_C3HHeJ_P0082209 Dyrk1b protein_coding protein_coding MGP_C3HHeJ_T0082210.1 MGP_C3HHeJ_G0031640.1 mouse_genomes_project 7 27351284 27358694 + MGP_C3HHeJ_P0082210 Dyrk1b protein_coding protein_coding MGP_C3HHeJ_T0082211.1 MGP_C3HHeJ_G0031640.1 mouse_genomes_project 7 27352036 27359065 + MGP_C3HHeJ_P0082211 Dyrk1b protein_coding protein_coding MGP_C3HHeJ_T0082212.1 MGP_C3HHeJ_G0031640.1 mouse_genomes_project 7 27352086 27358714 + MGP_C3HHeJ_P0082212 Dyrk1b protein_coding protein_coding MGP_C3HHeJ_T0008923.1 MGP_C3HHeJ_G0007180.1 mouse_genomes_project 7 125408390 125410079 + 1700025J12Rik lincRNA lincRNA MGP_C3HHeJ_T0015729.1 MGP_C3HHeJ_G0013833.1 mouse_genomes_project 7 133210773 133211531 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085065.1 MGP_C3HHeJ_G0032335.1 mouse_genomes_project 7 106171190 106172231 + MGP_C3HHeJ_P0085065 Olfr574 protein_coding protein_coding MGP_C3HHeJ_T0010815.1 MGP_C3HHeJ_G0008948.1 mouse_genomes_project 7 84038168 84038241 + Mir1839 miRNA miRNA MGP_C3HHeJ_T0084474.1 MGP_C3HHeJ_G0032166.1 mouse_genomes_project 7 87530650 87550641 - MGP_C3HHeJ_P0084474 Vmn2r65 protein_coding protein_coding MGP_C3HHeJ_T0085746.1 MGP_C3HHeJ_G0032609.1 mouse_genomes_project 7 123203614 123235746 - MGP_C3HHeJ_P0085746 Pdilt protein_coding protein_coding MGP_C3HHeJ_T0002207.1 MGP_C3HHeJ_G0002128.1 mouse_genomes_project 7 66157145 66160548 - TEC TEC MGP_C3HHeJ_T0080860.1 MGP_C3HHeJ_G0031230.1 mouse_genomes_project 7 552102 566657 - MGP_C3HHeJ_P0080860 Tmc4 protein_coding protein_coding MGP_C3HHeJ_T0080861.1 MGP_C3HHeJ_G0031230.1 mouse_genomes_project 7 552110 553203 - MGP_C3HHeJ_P0080861 Tmc4 protein_coding protein_coding MGP_C3HHeJ_T0080862.1 MGP_C3HHeJ_G0031230.1 mouse_genomes_project 7 552277 558659 - Tmc4 protein_coding retained_intron MGP_C3HHeJ_T0080863.1 MGP_C3HHeJ_G0031230.1 mouse_genomes_project 7 558753 565806 - Tmc4 protein_coding retained_intron MGP_C3HHeJ_T0080864.1 MGP_C3HHeJ_G0031230.1 mouse_genomes_project 7 558867 566703 - Tmc4 protein_coding retained_intron MGP_C3HHeJ_T0080865.1 MGP_C3HHeJ_G0031230.1 mouse_genomes_project 7 564355 566663 - Tmc4 protein_coding retained_intron MGP_C3HHeJ_T0081632.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17771697 17781814 - MGP_C3HHeJ_P0081632 Klc3 protein_coding protein_coding MGP_C3HHeJ_T0081633.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17771700 17777622 - MGP_C3HHeJ_P0081633 Klc3 protein_coding protein_coding MGP_C3HHeJ_T0081634.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17771700 17777579 - MGP_C3HHeJ_P0081634 Klc3 protein_coding protein_coding MGP_C3HHeJ_T0081635.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17771761 17773243 - Klc3 protein_coding retained_intron MGP_C3HHeJ_T0081636.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17771824 17777249 - MGP_C3HHeJ_P0081636 Klc3 protein_coding protein_coding MGP_C3HHeJ_T0081637.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17772614 17773837 - Klc3 protein_coding retained_intron MGP_C3HHeJ_T0081638.1 MGP_C3HHeJ_G0031478.1 mouse_genomes_project 7 17773003 17781527 - MGP_C3HHeJ_P0081638 Klc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082662.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30199788 30201653 + Krtdap protein_coding retained_intron MGP_C3HHeJ_T0082663.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30199797 30202957 + MGP_C3HHeJ_P0082663 Krtdap protein_coding protein_coding MGP_C3HHeJ_T0082664.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30199797 30202973 + MGP_C3HHeJ_P0082664 Krtdap protein_coding protein_coding MGP_C3HHeJ_T0082665.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30199797 30202979 + MGP_C3HHeJ_P0082665 Krtdap protein_coding protein_coding MGP_C3HHeJ_T0082666.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30199797 30202987 + MGP_C3HHeJ_P0082666 Krtdap protein_coding protein_coding MGP_C3HHeJ_T0082667.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30199797 30202975 + MGP_C3HHeJ_P0082667 Krtdap protein_coding protein_coding MGP_C3HHeJ_T0082668.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30201691 30202975 + Krtdap protein_coding retained_intron MGP_C3HHeJ_T0082669.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30201743 30202973 + Krtdap protein_coding retained_intron MGP_C3HHeJ_T0082670.1 MGP_C3HHeJ_G0031748.1 mouse_genomes_project 7 30202376 30202975 + Krtdap protein_coding retained_intron MGP_C3HHeJ_T0099587.1 MGP_C3HHeJ_G0037781.1 mouse_genomes_project 7 84188515 84188623 + Gm26149 snRNA snRNA MGP_C3HHeJ_T0102201.1 MGP_C3HHeJ_G0031554.1 mouse_genomes_project 7 23711918 23712504 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015660.1 MGP_C3HHeJ_G0013764.1 mouse_genomes_project 7 88891334 88891584 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011585.1 MGP_C3HHeJ_G0009718.1 mouse_genomes_project 7 13872263 13872511 + Gm24576 misc_RNA misc_RNA MGP_C3HHeJ_T0084916.1 MGP_C3HHeJ_G0032285.1 mouse_genomes_project 7 104546648 104643158 + MGP_C3HHeJ_P0084916 protein_coding protein_coding MGP_C3HHeJ_T0084917.1 MGP_C3HHeJ_G0032285.1 mouse_genomes_project 7 104546648 104643158 + MGP_C3HHeJ_P0084917 protein_coding protein_coding MGP_C3HHeJ_T0084918.1 MGP_C3HHeJ_G0032285.1 mouse_genomes_project 7 104546666 104643143 + MGP_C3HHeJ_P0084918 protein_coding protein_coding MGP_C3HHeJ_T0015545.1 MGP_C3HHeJ_G0013649.1 mouse_genomes_project 7 24710920 24711208 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086578.1 MGP_C3HHeJ_G0032774.1 mouse_genomes_project 7 132342593 132343348 + Armc5 protein_coding processed_transcript MGP_C3HHeJ_T0086579.1 MGP_C3HHeJ_G0032774.1 mouse_genomes_project 7 132342608 132350008 + MGP_C3HHeJ_P0086579 Armc5 protein_coding protein_coding MGP_C3HHeJ_T0099602.1 MGP_C3HHeJ_G0037796.1 mouse_genomes_project 7 113466121 113466262 + Gm23100 snRNA snRNA MGP_C3HHeJ_T0005224.1 MGP_C3HHeJ_G0004425.1 mouse_genomes_project 7 132090688 132093952 - Gm15533 antisense antisense MGP_C3HHeJ_T0005225.1 MGP_C3HHeJ_G0004425.1 mouse_genomes_project 7 132091640 132093982 - Gm15533 antisense antisense MGP_C3HHeJ_T0085411.1 MGP_C3HHeJ_G0032539.1 mouse_genomes_project 7 112885363 112930357 - MGP_C3HHeJ_P0085411 Trim66 protein_coding protein_coding MGP_C3HHeJ_T0085412.1 MGP_C3HHeJ_G0032539.1 mouse_genomes_project 7 112889848 112945628 - MGP_C3HHeJ_P0085412 Trim66 protein_coding protein_coding MGP_C3HHeJ_T0085413.1 MGP_C3HHeJ_G0032539.1 mouse_genomes_project 7 112889848 112945628 - MGP_C3HHeJ_P0085413 Trim66 protein_coding protein_coding MGP_C3HHeJ_T0085414.1 MGP_C3HHeJ_G0032539.1 mouse_genomes_project 7 112906065 112911472 - Trim66 protein_coding processed_transcript MGP_C3HHeJ_T0083649.1 MGP_C3HHeJ_G0031988.1 mouse_genomes_project 7 48554806 48555978 - MGP_C3HHeJ_P0083649 protein_coding protein_coding MGP_C3HHeJ_T0082374.1 MGP_C3HHeJ_G0031679.1 mouse_genomes_project 7 28445731 28452183 - MGP_C3HHeJ_P0082374 Psmd8 protein_coding protein_coding MGP_C3HHeJ_T0082375.1 MGP_C3HHeJ_G0031679.1 mouse_genomes_project 7 28445731 28452304 - MGP_C3HHeJ_P0082375 Psmd8 protein_coding protein_coding MGP_C3HHeJ_T0082376.1 MGP_C3HHeJ_G0031679.1 mouse_genomes_project 7 28445731 28452332 - MGP_C3HHeJ_P0082376 Psmd8 protein_coding protein_coding MGP_C3HHeJ_T0085745.1 MGP_C3HHeJ_G0032608.1 mouse_genomes_project 7 123179504 123196087 - MGP_C3HHeJ_P0085745 Umod protein_coding protein_coding MGP_C3HHeJ_T0081615.1 MGP_C3HHeJ_G0031475.1 mouse_genomes_project 7 17732435 17735060 - MGP_C3HHeJ_P0081615 Cd3eap protein_coding protein_coding MGP_C3HHeJ_T0081616.1 MGP_C3HHeJ_G0031475.1 mouse_genomes_project 7 17734416 17735062 - Cd3eap protein_coding retained_intron MGP_C3HHeJ_T0083622.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48050748 48061941 + MGP_C3HHeJ_P0083622 Ldha protein_coding protein_coding MGP_C3HHeJ_T0083623.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48055116 48058992 + Ldha protein_coding processed_transcript MGP_C3HHeJ_T0083624.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48055116 48058092 + Ldha protein_coding retained_intron MGP_C3HHeJ_T0083625.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48055136 48061950 + MGP_C3HHeJ_P0083625 Ldha protein_coding protein_coding MGP_C3HHeJ_T0083626.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48055370 48058998 + Ldha protein_coding processed_transcript MGP_C3HHeJ_T0083627.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48056404 48065564 + MGP_C3HHeJ_P0083627 Ldha protein_coding protein_coding MGP_C3HHeJ_T0083628.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48056778 48060943 + Ldha protein_coding retained_intron MGP_C3HHeJ_T0083629.1 MGP_C3HHeJ_G0031978.1 mouse_genomes_project 7 48056893 48065573 + MGP_C3HHeJ_P0083629 Ldha protein_coding protein_coding MGP_C3HHeJ_T0084182.1 MGP_C3HHeJ_G0032102.1 mouse_genomes_project 7 82210311 82241018 - MGP_C3HHeJ_P0084182 Anpep protein_coding protein_coding MGP_C3HHeJ_T0084183.1 MGP_C3HHeJ_G0032102.1 mouse_genomes_project 7 82210312 82214008 - Anpep protein_coding retained_intron MGP_C3HHeJ_T0084184.1 MGP_C3HHeJ_G0032102.1 mouse_genomes_project 7 82210312 82235160 - MGP_C3HHeJ_P0084184 Anpep protein_coding protein_coding MGP_C3HHeJ_T0084185.1 MGP_C3HHeJ_G0032102.1 mouse_genomes_project 7 82210772 82240991 - MGP_C3HHeJ_P0084185 Anpep protein_coding protein_coding MGP_C3HHeJ_T0084186.1 MGP_C3HHeJ_G0032102.1 mouse_genomes_project 7 82234863 82254708 - MGP_C3HHeJ_P0084186 Anpep protein_coding protein_coding MGP_C3HHeJ_T0084187.1 MGP_C3HHeJ_G0032102.1 mouse_genomes_project 7 82235421 82241001 - Anpep protein_coding processed_transcript MGP_C3HHeJ_T0102256.1 MGP_C3HHeJ_G0040219.1 mouse_genomes_project 7 49512461 49513344 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0018202.1 MGP_C3HHeJ_G0015457.1 mouse_genomes_project 7 135083143 135088175 - Gm5602 processed_transcript processed_transcript MGP_C3HHeJ_T0085179.1 MGP_C3HHeJ_G0032416.1 mouse_genomes_project 7 107767383 107768429 + MGP_C3HHeJ_P0085179 Olfr653 protein_coding protein_coding MGP_C3HHeJ_T0081144.1 MGP_C3HHeJ_G0031303.1 mouse_genomes_project 7 3376665 3392197 - MGP_C3HHeJ_P0081144 Zfp583 protein_coding protein_coding MGP_C3HHeJ_T0081145.1 MGP_C3HHeJ_G0031303.1 mouse_genomes_project 7 3377281 3391346 - MGP_C3HHeJ_P0081145 Zfp583 protein_coding protein_coding MGP_C3HHeJ_T0081146.1 MGP_C3HHeJ_G0031303.1 mouse_genomes_project 7 3377310 3390175 - MGP_C3HHeJ_P0081146 Zfp583 protein_coding protein_coding MGP_C3HHeJ_T0081147.1 MGP_C3HHeJ_G0031303.1 mouse_genomes_project 7 3378634 3392162 - Zfp583 protein_coding processed_transcript MGP_C3HHeJ_T0081148.1 MGP_C3HHeJ_G0031303.1 mouse_genomes_project 7 3384163 3392116 - Zfp583 protein_coding processed_transcript MGP_C3HHeJ_T0081149.1 MGP_C3HHeJ_G0031303.1 mouse_genomes_project 7 3384617 3392190 - MGP_C3HHeJ_P0081149 Zfp583 protein_coding protein_coding MGP_C3HHeJ_T0082538.1 MGP_C3HHeJ_G0031718.1 mouse_genomes_project 7 29705618 29707351 + MGP_C3HHeJ_P0082538 E130208F15Rik protein_coding protein_coding MGP_C3HHeJ_T0086367.1 MGP_C3HHeJ_G0032732.1 mouse_genomes_project 7 131434027 131437758 - MGP_C3HHeJ_P0086367 E430018J23Rik protein_coding protein_coding MGP_C3HHeJ_T0005144.1 MGP_C3HHeJ_G0004369.1 mouse_genomes_project 7 47760925 47777486 + Gm15700 antisense antisense MGP_C3HHeJ_T0081190.1 MGP_C3HHeJ_G0031331.1 mouse_genomes_project 7 7953482 7993742 + MGP_C3HHeJ_P0081190 Nlrp4b protein_coding protein_coding MGP_C3HHeJ_T0081191.1 MGP_C3HHeJ_G0031331.1 mouse_genomes_project 7 7953510 7993752 + MGP_C3HHeJ_P0081191 Nlrp4b protein_coding protein_coding MGP_C3HHeJ_T0081192.1 MGP_C3HHeJ_G0031331.1 mouse_genomes_project 7 7977945 7990719 + MGP_C3HHeJ_P0081192 Nlrp4b protein_coding protein_coding MGP_C3HHeJ_T0015648.1 MGP_C3HHeJ_G0013752.1 mouse_genomes_project 7 82664474 82665577 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015544.1 MGP_C3HHeJ_G0013648.1 mouse_genomes_project 7 24692263 24692879 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085314.1 MGP_C3HHeJ_G0032463.1 mouse_genomes_project 7 109909078 109917838 - MGP_C3HHeJ_P0085314 protein_coding protein_coding MGP_C3HHeJ_T0083102.1 MGP_C3HHeJ_G0031846.1 mouse_genomes_project 7 44792751 44798888 + MGP_C3HHeJ_P0083102 Klk11 protein_coding protein_coding MGP_C3HHeJ_T0083103.1 MGP_C3HHeJ_G0031846.1 mouse_genomes_project 7 44795953 44798578 + Klk11 protein_coding retained_intron MGP_C3HHeJ_T0083104.1 MGP_C3HHeJ_G0031846.1 mouse_genomes_project 7 44795953 44798883 + MGP_C3HHeJ_P0083104 Klk11 protein_coding protein_coding MGP_C3HHeJ_T0083105.1 MGP_C3HHeJ_G0031846.1 mouse_genomes_project 7 44796104 44798685 + Klk11 protein_coding processed_transcript MGP_C3HHeJ_T0083106.1 MGP_C3HHeJ_G0031846.1 mouse_genomes_project 7 44796104 44798685 + Klk11 protein_coding processed_transcript MGP_C3HHeJ_T0005238.1 MGP_C3HHeJ_G0004436.1 mouse_genomes_project 7 147447233 147459400 + Igf2os antisense antisense MGP_C3HHeJ_T0005239.1 MGP_C3HHeJ_G0004436.1 mouse_genomes_project 7 147447252 147448234 + Igf2os antisense antisense MGP_C3HHeJ_T0005240.1 MGP_C3HHeJ_G0004436.1 mouse_genomes_project 7 147452676 147453631 + Igf2os antisense antisense MGP_C3HHeJ_T0097920.1 MGP_C3HHeJ_G0036132.1 mouse_genomes_project 7 63897458 63901805 - pseudogene pseudogene MGP_C3HHeJ_T0018194.1 MGP_C3HHeJ_G0015452.1 mouse_genomes_project 7 130943386 130956296 + Gm21984 processed_transcript processed_transcript MGP_C3HHeJ_T0086640.1 MGP_C3HHeJ_G0032783.1 mouse_genomes_project 7 132831516 132876944 - MGP_C3HHeJ_P0086640 Mcmbp protein_coding protein_coding MGP_C3HHeJ_T0086641.1 MGP_C3HHeJ_G0032783.1 mouse_genomes_project 7 132832827 132876935 - MGP_C3HHeJ_P0086641 Mcmbp protein_coding protein_coding MGP_C3HHeJ_T0086642.1 MGP_C3HHeJ_G0032783.1 mouse_genomes_project 7 132833247 132834280 - Mcmbp protein_coding processed_transcript MGP_C3HHeJ_T0086643.1 MGP_C3HHeJ_G0032783.1 mouse_genomes_project 7 132834383 132838397 - Mcmbp protein_coding retained_intron MGP_C3HHeJ_T0086644.1 MGP_C3HHeJ_G0032783.1 mouse_genomes_project 7 132849041 132851289 - Mcmbp protein_coding retained_intron MGP_C3HHeJ_T0008716.1 MGP_C3HHeJ_G0007032.1 mouse_genomes_project 7 661977 665973 - lincRNA lincRNA MGP_C3HHeJ_T0086939.1 MGP_C3HHeJ_G0032850.1 mouse_genomes_project 7 144419544 144462973 + MGP_C3HHeJ_P0086939 Adgra1 protein_coding protein_coding MGP_C3HHeJ_T0086940.1 MGP_C3HHeJ_G0032850.1 mouse_genomes_project 7 144419735 144431349 + Adgra1 protein_coding processed_transcript MGP_C3HHeJ_T0086941.1 MGP_C3HHeJ_G0032850.1 mouse_genomes_project 7 144420332 144426562 + Adgra1 protein_coding retained_intron MGP_C3HHeJ_T0081503.1 MGP_C3HHeJ_G0031442.1 mouse_genomes_project 7 16736777 16751252 - MGP_C3HHeJ_P0081503 Psg25 protein_coding protein_coding MGP_C3HHeJ_T0080845.1 MGP_C3HHeJ_G0031227.1 mouse_genomes_project 7 512936 525435 + MGP_C3HHeJ_P0080845 Prpf31 protein_coding protein_coding MGP_C3HHeJ_T0080846.1 MGP_C3HHeJ_G0031227.1 mouse_genomes_project 7 512936 525436 + MGP_C3HHeJ_P0080846 Prpf31 protein_coding protein_coding MGP_C3HHeJ_T0080847.1 MGP_C3HHeJ_G0031227.1 mouse_genomes_project 7 512943 514373 + Prpf31 protein_coding retained_intron MGP_C3HHeJ_T0080848.1 MGP_C3HHeJ_G0031227.1 mouse_genomes_project 7 513010 520008 + MGP_C3HHeJ_P0080848 Prpf31 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080849.1 MGP_C3HHeJ_G0031227.1 mouse_genomes_project 7 513508 524179 + MGP_C3HHeJ_P0080849 Prpf31 protein_coding protein_coding MGP_C3HHeJ_T0080850.1 MGP_C3HHeJ_G0031227.1 mouse_genomes_project 7 519046 520008 + Prpf31 protein_coding retained_intron MGP_C3HHeJ_T0081279.1 MGP_C3HHeJ_G0031366.1 mouse_genomes_project 7 10665130 10666057 - MGP_C3HHeJ_P0081279 Vmn1r85 protein_coding protein_coding MGP_C3HHeJ_T0084934.1 MGP_C3HHeJ_G0032290.1 mouse_genomes_project 7 105002077 105007358 - MGP_C3HHeJ_P0084934 Folr2 protein_coding protein_coding MGP_C3HHeJ_T0010782.1 MGP_C3HHeJ_G0008915.1 mouse_genomes_project 7 49068785 49068895 + Gm22427 miRNA miRNA MGP_C3HHeJ_T0010852.1 MGP_C3HHeJ_G0008985.1 mouse_genomes_project 7 148868570 148868655 + Mir3105 miRNA miRNA MGP_C3HHeJ_T0015614.1 MGP_C3HHeJ_G0013718.1 mouse_genomes_project 7 57050579 57051125 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081152.1 MGP_C3HHeJ_G0031305.1 mouse_genomes_project 7 3449809 3463467 + MGP_C3HHeJ_P0081152 Zfp28 protein_coding protein_coding MGP_C3HHeJ_T0083047.1 MGP_C3HHeJ_G0031826.1 mouse_genomes_project 7 44423865 44425117 + MGP_C3HHeJ_P0083047 protein_coding protein_coding MGP_C3HHeJ_T0085131.1 MGP_C3HHeJ_G0032397.1 mouse_genomes_project 7 107394480 107395419 + MGP_C3HHeJ_P0085131 Olfr646 protein_coding protein_coding MGP_C3HHeJ_T0083113.1 MGP_C3HHeJ_G0031851.1 mouse_genomes_project 7 44848621 44857240 + MGP_C3HHeJ_P0083113 Klk6 protein_coding protein_coding MGP_C3HHeJ_T0083114.1 MGP_C3HHeJ_G0031851.1 mouse_genomes_project 7 44848680 44856996 + MGP_C3HHeJ_P0083114 Klk6 protein_coding protein_coding MGP_C3HHeJ_T0083115.1 MGP_C3HHeJ_G0031851.1 mouse_genomes_project 7 44848692 44853804 + MGP_C3HHeJ_P0083115 Klk6 protein_coding protein_coding MGP_C3HHeJ_T0083116.1 MGP_C3HHeJ_G0031851.1 mouse_genomes_project 7 44850614 44856996 + MGP_C3HHeJ_P0083116 Klk6 protein_coding protein_coding MGP_C3HHeJ_T0015706.1 MGP_C3HHeJ_G0013810.1 mouse_genomes_project 7 126106952 126107676 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098182.1 MGP_C3HHeJ_G0036394.1 mouse_genomes_project 7 120253524 120253649 - n-R5s157 rRNA rRNA MGP_C3HHeJ_T0010766.1 MGP_C3HHeJ_G0008899.1 mouse_genomes_project 7 29118685 29118768 + Mir1964 miRNA miRNA MGP_C3HHeJ_T0081671.1 MGP_C3HHeJ_G0031491.1 mouse_genomes_project 7 18024089 18060800 - MGP_C3HHeJ_P0081671 Clptm1 protein_coding protein_coding MGP_C3HHeJ_T0081468.1 MGP_C3HHeJ_G0031425.1 mouse_genomes_project 7 14954151 14958316 + MGP_C3HHeJ_P0081468 Pnmal2 protein_coding protein_coding MGP_C3HHeJ_T0010822.1 MGP_C3HHeJ_G0008955.1 mouse_genomes_project 7 105044425 105044521 + Gm22655 miRNA miRNA MGP_C3HHeJ_T0083938.1 MGP_C3HHeJ_G0032057.1 mouse_genomes_project 7 68568652 68613780 - MGP_C3HHeJ_P0083938 Asb7 protein_coding protein_coding MGP_C3HHeJ_T0083939.1 MGP_C3HHeJ_G0032057.1 mouse_genomes_project 7 68568652 68613073 - MGP_C3HHeJ_P0083939 Asb7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083940.1 MGP_C3HHeJ_G0032057.1 mouse_genomes_project 7 68601213 68613658 - MGP_C3HHeJ_P0083940 Asb7 protein_coding protein_coding MGP_C3HHeJ_T0081160.1 MGP_C3HHeJ_G0031311.1 mouse_genomes_project 7 3552515 3559057 - MGP_C3HHeJ_P0081160 Olfr5 protein_coding protein_coding MGP_C3HHeJ_T0082448.1 MGP_C3HHeJ_G0031698.1 mouse_genomes_project 7 29347251 29394418 + MGP_C3HHeJ_P0082448 Zfp568 protein_coding protein_coding MGP_C3HHeJ_T0082449.1 MGP_C3HHeJ_G0031698.1 mouse_genomes_project 7 29348595 29397589 + MGP_C3HHeJ_P0082449 Zfp568 protein_coding protein_coding MGP_C3HHeJ_T0082450.1 MGP_C3HHeJ_G0031698.1 mouse_genomes_project 7 29351069 29392954 + MGP_C3HHeJ_P0082450 Zfp568 protein_coding protein_coding MGP_C3HHeJ_T0082451.1 MGP_C3HHeJ_G0031698.1 mouse_genomes_project 7 29351069 29392954 + MGP_C3HHeJ_P0082451 Zfp568 protein_coding protein_coding MGP_C3HHeJ_T0081023.1 MGP_C3HHeJ_G0031258.1 mouse_genomes_project 7 1663510 1691495 + MGP_C3HHeJ_P0081023 Brsk1 protein_coding protein_coding MGP_C3HHeJ_T0081024.1 MGP_C3HHeJ_G0031258.1 mouse_genomes_project 7 1663834 1691511 + MGP_C3HHeJ_P0081024 Brsk1 protein_coding protein_coding MGP_C3HHeJ_T0081025.1 MGP_C3HHeJ_G0031258.1 mouse_genomes_project 7 1663986 1679088 + MGP_C3HHeJ_P0081025 Brsk1 protein_coding protein_coding MGP_C3HHeJ_T0081026.1 MGP_C3HHeJ_G0031258.1 mouse_genomes_project 7 1665149 1679088 + MGP_C3HHeJ_P0081026 Brsk1 protein_coding protein_coding MGP_C3HHeJ_T0081028.1 MGP_C3HHeJ_G0031258.1 mouse_genomes_project 7 1682647 1684624 + MGP_C3HHeJ_P0081028 Brsk1 protein_coding protein_coding MGP_C3HHeJ_T0083308.1 MGP_C3HHeJ_G0031893.1 mouse_genomes_project 7 45983749 46019055 - MGP_C3HHeJ_P0083308 Ap2a1 protein_coding protein_coding MGP_C3HHeJ_T0083309.1 MGP_C3HHeJ_G0031893.1 mouse_genomes_project 7 45983749 46019055 - MGP_C3HHeJ_P0083309 Ap2a1 protein_coding protein_coding MGP_C3HHeJ_T0083310.1 MGP_C3HHeJ_G0031893.1 mouse_genomes_project 7 45983749 46019055 - MGP_C3HHeJ_P0083310 Ap2a1 protein_coding protein_coding MGP_C3HHeJ_T0083311.1 MGP_C3HHeJ_G0031893.1 mouse_genomes_project 7 45983749 46019055 - MGP_C3HHeJ_P0083311 Ap2a1 protein_coding protein_coding MGP_C3HHeJ_T0081328.1 MGP_C3HHeJ_G0031387.1 mouse_genomes_project 7 12435142 13676042 + MGP_C3HHeJ_P0081328 protein_coding protein_coding MGP_C3HHeJ_T0081329.1 MGP_C3HHeJ_G0031387.1 mouse_genomes_project 7 12435142 13676046 + MGP_C3HHeJ_P0081329 protein_coding protein_coding MGP_C3HHeJ_T0081334.1 MGP_C3HHeJ_G0031387.1 mouse_genomes_project 7 13225925 13636980 + MGP_C3HHeJ_P0081334 protein_coding protein_coding MGP_C3HHeJ_T0015657.1 MGP_C3HHeJ_G0013761.1 mouse_genomes_project 7 87509367 87510490 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015610.1 MGP_C3HHeJ_G0013714.1 mouse_genomes_project 7 52946770 52946888 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084676.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100971761 101046585 - MGP_C3HHeJ_P0084676 Myo7a protein_coding protein_coding MGP_C3HHeJ_T0084677.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100971764 100994653 - MGP_C3HHeJ_P0084677 Myo7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084678.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100972102 101036126 - MGP_C3HHeJ_P0084678 Myo7a protein_coding protein_coding MGP_C3HHeJ_T0084679.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100972102 101036126 - MGP_C3HHeJ_P0084679 Myo7a protein_coding protein_coding MGP_C3HHeJ_T0084680.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100972191 101033810 - MGP_C3HHeJ_P0084680 Myo7a protein_coding protein_coding MGP_C3HHeJ_T0084681.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100972326 101046564 - MGP_C3HHeJ_P0084681 Myo7a protein_coding protein_coding MGP_C3HHeJ_T0084682.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 100987963 100990484 - Myo7a protein_coding retained_intron MGP_C3HHeJ_T0084683.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 101006403 101010003 - Myo7a protein_coding processed_transcript MGP_C3HHeJ_T0084684.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 101024233 101039563 - Myo7a protein_coding processed_transcript MGP_C3HHeJ_T0084685.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 101024808 101030041 - Myo7a protein_coding processed_transcript MGP_C3HHeJ_T0084686.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 101024848 101030040 - Myo7a protein_coding processed_transcript MGP_C3HHeJ_T0084687.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 101024857 101046554 - MGP_C3HHeJ_P0084687 Myo7a protein_coding protein_coding MGP_C3HHeJ_T0084688.1 MGP_C3HHeJ_G0032233.1 mouse_genomes_project 7 101035610 101046553 - Myo7a protein_coding processed_transcript MGP_C3HHeJ_T0015708.1 MGP_C3HHeJ_G0013812.1 mouse_genomes_project 7 126702872 126703199 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100826.1 MGP_C3HHeJ_G0039020.1 mouse_genomes_project 7 59755954 59756086 - Gm26288 snoRNA snoRNA MGP_C3HHeJ_T0081594.1 MGP_C3HHeJ_G0031470.1 mouse_genomes_project 7 17626437 17641618 - MGP_C3HHeJ_P0081594 Vasp protein_coding protein_coding MGP_C3HHeJ_T0081595.1 MGP_C3HHeJ_G0031470.1 mouse_genomes_project 7 17627092 17627640 - Vasp protein_coding retained_intron MGP_C3HHeJ_T0081596.1 MGP_C3HHeJ_G0031470.1 mouse_genomes_project 7 17630244 17630660 - Vasp protein_coding processed_transcript MGP_C3HHeJ_T0081597.1 MGP_C3HHeJ_G0031470.1 mouse_genomes_project 7 17630445 17636344 - Vasp protein_coding processed_transcript MGP_C3HHeJ_T0085127.1 MGP_C3HHeJ_G0032393.1 mouse_genomes_project 7 107335694 107336639 - MGP_C3HHeJ_P0085127 Olfr642 protein_coding protein_coding MGP_C3HHeJ_T0008957.1 MGP_C3HHeJ_G0007202.1 mouse_genomes_project 7 133837521 133911333 + Gm44868 lincRNA lincRNA MGP_C3HHeJ_T0008958.1 MGP_C3HHeJ_G0007202.1 mouse_genomes_project 7 133837609 133841280 + Gm44868 lincRNA lincRNA MGP_C3HHeJ_T0018200.1 MGP_C3HHeJ_G0015456.1 mouse_genomes_project 7 132589663 132603902 + Gm45019 processed_transcript lincRNA MGP_C3HHeJ_T0018201.1 MGP_C3HHeJ_G0015456.1 mouse_genomes_project 7 132602548 132603901 + Gm45019 processed_transcript retained_intron MGP_C3HHeJ_T0083795.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60808652 60869705 + MGP_C3HHeJ_P0083795 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083796.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60808653 60880427 + MGP_C3HHeJ_P0083796 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083797.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60808704 60885237 + MGP_C3HHeJ_P0083797 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083798.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60808704 60827484 + MGP_C3HHeJ_P0083798 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083799.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60808704 60852347 + MGP_C3HHeJ_P0083799 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083800.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60808724 60867818 + Ube3a protein_coding retained_intron MGP_C3HHeJ_T0083801.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60809079 60856342 + Ube3a protein_coding processed_transcript MGP_C3HHeJ_T0083802.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60809127 60827827 + Ube3a protein_coding processed_transcript MGP_C3HHeJ_T0083803.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60809185 60856605 + MGP_C3HHeJ_P0083803 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083804.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60823193 60852257 + MGP_C3HHeJ_P0083804 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083805.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60857188 60861553 + Ube3a protein_coding retained_intron MGP_C3HHeJ_T0083806.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60862778 60866126 + Ube3a protein_coding retained_intron MGP_C3HHeJ_T0083807.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60866541 60878632 + MGP_C3HHeJ_P0083807 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083808.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60867297 60878642 + MGP_C3HHeJ_P0083808 Ube3a protein_coding protein_coding MGP_C3HHeJ_T0083809.1 MGP_C3HHeJ_G0032026.1 mouse_genomes_project 7 60877210 60878644 + Ube3a protein_coding retained_intron MGP_C3HHeJ_T0102265.1 MGP_C3HHeJ_G0040228.1 mouse_genomes_project 7 87398333 87399349 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015513.1 MGP_C3HHeJ_G0013617.1 mouse_genomes_project 7 11550618 11550832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086261.1 MGP_C3HHeJ_G0032707.1 mouse_genomes_project 7 130946809 130951369 - MGP_C3HHeJ_P0086261 protein_coding protein_coding MGP_C3HHeJ_T0086262.1 MGP_C3HHeJ_G0032707.1 mouse_genomes_project 7 130948198 130951792 - MGP_C3HHeJ_P0086262 protein_coding protein_coding MGP_C3HHeJ_T0086263.1 MGP_C3HHeJ_G0032707.1 mouse_genomes_project 7 130948217 130951791 - MGP_C3HHeJ_P0086263 protein_coding protein_coding MGP_C3HHeJ_T0084974.1 MGP_C3HHeJ_G0032296.1 mouse_genomes_project 7 105137245 105182966 + MGP_C3HHeJ_P0084974 Numa1 protein_coding protein_coding MGP_C3HHeJ_T0084975.1 MGP_C3HHeJ_G0032296.1 mouse_genomes_project 7 105138011 105182969 + MGP_C3HHeJ_P0084975 Numa1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084976.1 MGP_C3HHeJ_G0032296.1 mouse_genomes_project 7 105169151 105182962 + MGP_C3HHeJ_P0084976 Numa1 protein_coding protein_coding MGP_C3HHeJ_T0015703.1 MGP_C3HHeJ_G0013807.1 mouse_genomes_project 7 124356341 124357192 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081282.1 MGP_C3HHeJ_G0031369.1 mouse_genomes_project 7 10828971 10829922 + MGP_C3HHeJ_P0081282 Vmn1r88 protein_coding protein_coding MGP_C3HHeJ_T0002270.1 MGP_C3HHeJ_G0002190.1 mouse_genomes_project 7 131185624 131186871 - TEC TEC MGP_C3HHeJ_T0085376.1 MGP_C3HHeJ_G0032517.1 mouse_genomes_project 7 111787053 111788046 + MGP_C3HHeJ_P0085376 protein_coding protein_coding MGP_C3HHeJ_T0010837.1 MGP_C3HHeJ_G0008970.1 mouse_genomes_project 7 135131681 135131749 + Mir7061 miRNA miRNA MGP_C3HHeJ_T0100815.1 MGP_C3HHeJ_G0039009.1 mouse_genomes_project 7 45279070 45279161 + Gm26247 snoRNA snoRNA MGP_C3HHeJ_T0085083.1 MGP_C3HHeJ_G0032351.1 mouse_genomes_project 7 106565798 106566745 + MGP_C3HHeJ_P0085083 protein_coding protein_coding MGP_C3HHeJ_T0082377.1 MGP_C3HHeJ_G0031680.1 mouse_genomes_project 7 28460535 29044069 - protein_coding processed_transcript MGP_C3HHeJ_T0082419.1 MGP_C3HHeJ_G0031680.1 mouse_genomes_project 7 29008875 29050653 - protein_coding retained_intron MGP_C3HHeJ_T0005201.1 MGP_C3HHeJ_G0004408.1 mouse_genomes_project 7 119592565 119611363 + Gm45025 antisense antisense MGP_C3HHeJ_T0002162.1 MGP_C3HHeJ_G0002083.1 mouse_genomes_project 7 17337787 17341026 - TEC TEC MGP_C3HHeJ_T0081493.1 MGP_C3HHeJ_G0031436.1 mouse_genomes_project 7 16179225 16188091 + MGP_C3HHeJ_P0081493 Ceacam13 protein_coding protein_coding MGP_C3HHeJ_T0081494.1 MGP_C3HHeJ_G0031436.1 mouse_genomes_project 7 16179225 16182822 + MGP_C3HHeJ_P0081494 Ceacam13 protein_coding protein_coding MGP_C3HHeJ_T0081833.1 MGP_C3HHeJ_G0031546.1 mouse_genomes_project 7 23456442 23478652 - MGP_C3HHeJ_P0081833 Gm4763 protein_coding protein_coding MGP_C3HHeJ_T0081834.1 MGP_C3HHeJ_G0031546.1 mouse_genomes_project 7 23466206 23468003 - MGP_C3HHeJ_P0081834 Gm4763 protein_coding protein_coding MGP_C3HHeJ_T0081835.1 MGP_C3HHeJ_G0031546.1 mouse_genomes_project 7 23466622 23468264 - Gm4763 protein_coding processed_transcript MGP_C3HHeJ_T0083595.1 MGP_C3HHeJ_G0031973.1 mouse_genomes_project 7 47892439 47916652 - MGP_C3HHeJ_P0083595 Saal1 protein_coding protein_coding MGP_C3HHeJ_T0083596.1 MGP_C3HHeJ_G0031973.1 mouse_genomes_project 7 47895600 47914889 - Saal1 protein_coding retained_intron MGP_C3HHeJ_T0083597.1 MGP_C3HHeJ_G0031973.1 mouse_genomes_project 7 47895635 47916613 - Saal1 protein_coding retained_intron MGP_C3HHeJ_T0083598.1 MGP_C3HHeJ_G0031973.1 mouse_genomes_project 7 47895637 47896229 - Saal1 protein_coding processed_transcript MGP_C3HHeJ_T0083599.1 MGP_C3HHeJ_G0031973.1 mouse_genomes_project 7 47897571 47916630 - Saal1 protein_coding retained_intron MGP_C3HHeJ_T0083600.1 MGP_C3HHeJ_G0031973.1 mouse_genomes_project 7 47897993 47916633 - Saal1 protein_coding retained_intron MGP_C3HHeJ_T0015559.1 MGP_C3HHeJ_G0013663.1 mouse_genomes_project 7 33214427 33215434 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010785.1 MGP_C3HHeJ_G0008918.1 mouse_genomes_project 7 55808517 55808704 - Gm25956 miRNA miRNA MGP_C3HHeJ_T0084777.1 MGP_C3HHeJ_G0032258.1 mouse_genomes_project 7 102853424 102874562 - MGP_C3HHeJ_P0084777 Spcs2 protein_coding protein_coding MGP_C3HHeJ_T0015595.1 MGP_C3HHeJ_G0013699.1 mouse_genomes_project 7 43849314 43849798 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081724.1 MGP_C3HHeJ_G0031506.1 mouse_genomes_project 7 18367227 18368022 + MGP_C3HHeJ_P0081724 protein_coding protein_coding MGP_C3HHeJ_T0081771.1 MGP_C3HHeJ_G0031528.1 mouse_genomes_project 7 23000540 23017218 - MGP_C3HHeJ_P0081771 Zfp94 protein_coding protein_coding MGP_C3HHeJ_T0081772.1 MGP_C3HHeJ_G0031528.1 mouse_genomes_project 7 23000633 23017279 - MGP_C3HHeJ_P0081772 Zfp94 protein_coding protein_coding MGP_C3HHeJ_T0081773.1 MGP_C3HHeJ_G0031528.1 mouse_genomes_project 7 23002463 23010020 - Zfp94 protein_coding retained_intron MGP_C3HHeJ_T0081774.1 MGP_C3HHeJ_G0031528.1 mouse_genomes_project 7 23009199 23017237 - Zfp94 protein_coding processed_transcript MGP_C3HHeJ_T0081775.1 MGP_C3HHeJ_G0031528.1 mouse_genomes_project 7 23009492 23017221 - Zfp94 protein_coding retained_intron MGP_C3HHeJ_T0081776.1 MGP_C3HHeJ_G0031528.1 mouse_genomes_project 7 23009607 23017195 - Zfp94 protein_coding processed_transcript MGP_C3HHeJ_T0015692.1 MGP_C3HHeJ_G0013796.1 mouse_genomes_project 7 108033314 108034367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086362.1 MGP_C3HHeJ_G0032730.1 mouse_genomes_project 7 131375505 131378134 - MGP_C3HHeJ_P0086362 Zfp768 protein_coding protein_coding MGP_C3HHeJ_T0086363.1 MGP_C3HHeJ_G0032730.1 mouse_genomes_project 7 131375505 131378300 - MGP_C3HHeJ_P0086363 Zfp768 protein_coding protein_coding MGP_C3HHeJ_T0102200.1 MGP_C3HHeJ_G0040164.1 mouse_genomes_project 7 22431443 22432333 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085092.1 MGP_C3HHeJ_G0032360.1 mouse_genomes_project 7 106761181 106762129 - MGP_C3HHeJ_P0085092 Olfr610 protein_coding protein_coding MGP_C3HHeJ_T0086445.1 MGP_C3HHeJ_G0032746.1 mouse_genomes_project 7 131726846 131777279 - MGP_C3HHeJ_P0086445 Bcl7c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086446.1 MGP_C3HHeJ_G0032746.1 mouse_genomes_project 7 131732166 131777133 - MGP_C3HHeJ_P0086446 Bcl7c protein_coding protein_coding MGP_C3HHeJ_T0086447.1 MGP_C3HHeJ_G0032746.1 mouse_genomes_project 7 131732322 131776956 - MGP_C3HHeJ_P0086447 Bcl7c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086448.1 MGP_C3HHeJ_G0032746.1 mouse_genomes_project 7 131772410 131777021 - MGP_C3HHeJ_P0086448 Bcl7c protein_coding protein_coding MGP_C3HHeJ_T0086449.1 MGP_C3HHeJ_G0032746.1 mouse_genomes_project 7 131772429 131775802 - MGP_C3HHeJ_P0086449 Bcl7c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086450.1 MGP_C3HHeJ_G0032746.1 mouse_genomes_project 7 131773235 131776569 - Bcl7c protein_coding processed_transcript MGP_C3HHeJ_T0087298.1 MGP_C3HHeJ_G0032948.1 mouse_genomes_project 7 146975224 146977611 - MGP_C3HHeJ_P0087298 protein_coding protein_coding MGP_C3HHeJ_T0085291.1 MGP_C3HHeJ_G0032458.1 mouse_genomes_project 7 109033478 109038447 - MGP_C3HHeJ_P0085291 Taf10 protein_coding protein_coding MGP_C3HHeJ_T0085299.1 MGP_C3HHeJ_G0032458.1 mouse_genomes_project 7 109036981 109038168 - Taf10 protein_coding retained_intron MGP_C3HHeJ_T0085300.1 MGP_C3HHeJ_G0032458.1 mouse_genomes_project 7 109036991 109037696 - Taf10 protein_coding retained_intron MGP_C3HHeJ_T0085301.1 MGP_C3HHeJ_G0032458.1 mouse_genomes_project 7 109037322 109038428 - Taf10 protein_coding retained_intron MGP_C3HHeJ_T0100820.1 MGP_C3HHeJ_G0039014.1 mouse_genomes_project 7 46224956 46225046 - Snord35a snoRNA snoRNA MGP_C3HHeJ_T0087071.1 MGP_C3HHeJ_G0032901.1 mouse_genomes_project 7 145602942 145605547 + MGP_C3HHeJ_P0087071 Ifitm1 protein_coding protein_coding MGP_C3HHeJ_T0087072.1 MGP_C3HHeJ_G0032901.1 mouse_genomes_project 7 145603749 145605547 + MGP_C3HHeJ_P0087072 Ifitm1 protein_coding protein_coding MGP_C3HHeJ_T0087073.1 MGP_C3HHeJ_G0032901.1 mouse_genomes_project 7 145603761 145605547 + MGP_C3HHeJ_P0087073 Ifitm1 protein_coding protein_coding MGP_C3HHeJ_T0081345.1 MGP_C3HHeJ_G0031393.1 mouse_genomes_project 7 13799135 13821845 + MGP_C3HHeJ_P0081345 protein_coding protein_coding MGP_C3HHeJ_T0081346.1 MGP_C3HHeJ_G0031393.1 mouse_genomes_project 7 13799171 13819985 + MGP_C3HHeJ_P0081346 protein_coding protein_coding MGP_C3HHeJ_T0084542.1 MGP_C3HHeJ_G0032201.1 mouse_genomes_project 7 92629828 92656747 - MGP_C3HHeJ_P0084542 Eed protein_coding protein_coding MGP_C3HHeJ_T0084543.1 MGP_C3HHeJ_G0032201.1 mouse_genomes_project 7 92652521 92656334 - Eed protein_coding processed_transcript MGP_C3HHeJ_T0084497.1 MGP_C3HHeJ_G0032186.1 mouse_genomes_project 7 89567300 89605489 + MGP_C3HHeJ_P0084497 protein_coding protein_coding MGP_C3HHeJ_T0015668.1 MGP_C3HHeJ_G0013772.1 mouse_genomes_project 7 98312912 98314360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084035.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76490070 76782636 - MGP_C3HHeJ_P0084035 Slco3a1 protein_coding protein_coding MGP_C3HHeJ_T0084036.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76496537 76782617 - MGP_C3HHeJ_P0084036 Slco3a1 protein_coding protein_coding MGP_C3HHeJ_T0084037.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76510067 76782783 - MGP_C3HHeJ_P0084037 Slco3a1 protein_coding protein_coding MGP_C3HHeJ_T0084038.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76546959 76565828 - Slco3a1 protein_coding retained_intron MGP_C3HHeJ_T0084039.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76565382 76782483 - MGP_C3HHeJ_P0084039 Slco3a1 protein_coding protein_coding MGP_C3HHeJ_T0084040.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76580261 76730098 - Slco3a1 protein_coding retained_intron MGP_C3HHeJ_T0084041.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76730001 76780603 - MGP_C3HHeJ_P0084041 Slco3a1 protein_coding protein_coding MGP_C3HHeJ_T0084042.1 MGP_C3HHeJ_G0032076.1 mouse_genomes_project 7 76730148 76758853 - Slco3a1 protein_coding processed_transcript MGP_C3HHeJ_T0082370.1 MGP_C3HHeJ_G0031677.1 mouse_genomes_project 7 28430382 28440187 - MGP_C3HHeJ_P0082370 Spred3 protein_coding protein_coding MGP_C3HHeJ_T0082371.1 MGP_C3HHeJ_G0031677.1 mouse_genomes_project 7 28437463 28441385 - Spred3 protein_coding retained_intron MGP_C3HHeJ_T0081906.1 MGP_C3HHeJ_G0031560.1 mouse_genomes_project 7 24016025 24036884 - Dedd2 protein_coding processed_transcript MGP_C3HHeJ_T0081907.1 MGP_C3HHeJ_G0031560.1 mouse_genomes_project 7 24019650 24036928 - MGP_C3HHeJ_P0081907 Dedd2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081908.1 MGP_C3HHeJ_G0031560.1 mouse_genomes_project 7 24034172 24036896 - Dedd2 protein_coding retained_intron MGP_C3HHeJ_T0005169.1 MGP_C3HHeJ_G0004387.1 mouse_genomes_project 7 83078966 83087320 + Gm15880 antisense antisense MGP_C3HHeJ_T0085704.1 MGP_C3HHeJ_G0032599.1 mouse_genomes_project 7 122282968 122367165 + MGP_C3HHeJ_P0085704 Tmc5 protein_coding protein_coding MGP_C3HHeJ_T0085705.1 MGP_C3HHeJ_G0032599.1 mouse_genomes_project 7 122282968 122367166 + MGP_C3HHeJ_P0085705 Tmc5 protein_coding protein_coding MGP_C3HHeJ_T0085706.1 MGP_C3HHeJ_G0032599.1 mouse_genomes_project 7 122287088 122367166 + MGP_C3HHeJ_P0085706 Tmc5 protein_coding protein_coding MGP_C3HHeJ_T0085707.1 MGP_C3HHeJ_G0032599.1 mouse_genomes_project 7 122307023 122366740 + MGP_C3HHeJ_P0085707 Tmc5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085708.1 MGP_C3HHeJ_G0032599.1 mouse_genomes_project 7 122321695 122367166 + MGP_C3HHeJ_P0085708 Tmc5 protein_coding protein_coding MGP_C3HHeJ_T0005220.1 MGP_C3HHeJ_G0004421.1 mouse_genomes_project 7 131567447 131569879 - 1700008J07Rik antisense antisense MGP_C3HHeJ_T0085123.1 MGP_C3HHeJ_G0032389.1 mouse_genomes_project 7 107298018 107298926 + MGP_C3HHeJ_P0085123 protein_coding protein_coding MGP_C3HHeJ_T0102273.1 MGP_C3HHeJ_G0040236.1 mouse_genomes_project 7 87864988 87866440 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0086947.1 MGP_C3HHeJ_G0032852.1 mouse_genomes_project 7 144533032 144534356 + MGP_C3HHeJ_P0086947 Utf1 protein_coding protein_coding MGP_C3HHeJ_T0081354.1 MGP_C3HHeJ_G0031398.1 mouse_genomes_project 7 14008093 14032449 + MGP_C3HHeJ_P0081354 Zfp541 protein_coding protein_coding MGP_C3HHeJ_T0084776.1 MGP_C3HHeJ_G0032257.1 mouse_genomes_project 7 102825790 102844234 - MGP_C3HHeJ_P0084776 Neu3 protein_coding protein_coding MGP_C3HHeJ_T0099613.1 MGP_C3HHeJ_G0037807.1 mouse_genomes_project 7 130914614 130914721 - Gm23445 snRNA snRNA MGP_C3HHeJ_T0081096.1 MGP_C3HHeJ_G0031280.1 mouse_genomes_project 7 2045731 2049485 + MGP_C3HHeJ_P0081096 protein_coding protein_coding MGP_C3HHeJ_T0002266.1 MGP_C3HHeJ_G0002186.1 mouse_genomes_project 7 129241575 129242735 + TEC TEC MGP_C3HHeJ_T0085350.1 MGP_C3HHeJ_G0032493.1 mouse_genomes_project 7 110919745 111072761 + MGP_C3HHeJ_P0085350 Ppfibp2 protein_coding protein_coding MGP_C3HHeJ_T0085351.1 MGP_C3HHeJ_G0032493.1 mouse_genomes_project 7 110931314 111076449 + MGP_C3HHeJ_P0085351 Ppfibp2 protein_coding protein_coding MGP_C3HHeJ_T0080939.1 MGP_C3HHeJ_G0031242.1 mouse_genomes_project 7 1104445 1106905 - MGP_C3HHeJ_P0080939 Leng9 protein_coding protein_coding MGP_C3HHeJ_T0081075.1 MGP_C3HHeJ_G0031270.1 mouse_genomes_project 7 1876877 1908151 + MGP_C3HHeJ_P0081075 Isoc2a protein_coding protein_coding MGP_C3HHeJ_T0015658.1 MGP_C3HHeJ_G0013762.1 mouse_genomes_project 7 87842350 87842996 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005070.1 MGP_C3HHeJ_G0004317.1 mouse_genomes_project 7 1406200 1429010 - Gm15494 antisense antisense MGP_C3HHeJ_T0005071.1 MGP_C3HHeJ_G0004317.1 mouse_genomes_project 7 1408260 1429046 - Gm15494 antisense antisense MGP_C3HHeJ_T0081003.1 MGP_C3HHeJ_G0031254.1 mouse_genomes_project 7 1511866 1571356 - MGP_C3HHeJ_P0081003 Ptprh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081004.1 MGP_C3HHeJ_G0031254.1 mouse_genomes_project 7 1512207 1572256 - MGP_C3HHeJ_P0081004 Ptprh protein_coding protein_coding MGP_C3HHeJ_T0081005.1 MGP_C3HHeJ_G0031254.1 mouse_genomes_project 7 1516833 1527567 - Ptprh protein_coding retained_intron MGP_C3HHeJ_T0081006.1 MGP_C3HHeJ_G0031254.1 mouse_genomes_project 7 1532486 1571354 - Ptprh protein_coding processed_transcript MGP_C3HHeJ_T0084487.1 MGP_C3HHeJ_G0032178.1 mouse_genomes_project 7 89062434 89063427 + MGP_C3HHeJ_P0084487 Olfr299 protein_coding protein_coding MGP_C3HHeJ_T0100818.1 MGP_C3HHeJ_G0039012.1 mouse_genomes_project 7 45281430 45281523 + Gm23991 snoRNA snoRNA MGP_C3HHeJ_T0082144.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26620074 26644148 - MGP_C3HHeJ_P0082144 Pld3 protein_coding protein_coding MGP_C3HHeJ_T0082145.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26620074 26644142 - MGP_C3HHeJ_P0082145 Pld3 protein_coding protein_coding MGP_C3HHeJ_T0082146.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26620269 26620821 - Pld3 protein_coding retained_intron MGP_C3HHeJ_T0082147.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26621528 26627683 - Pld3 protein_coding retained_intron MGP_C3HHeJ_T0082148.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26629393 26643946 - MGP_C3HHeJ_P0082148 Pld3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082149.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26630959 26644114 - MGP_C3HHeJ_P0082149 Pld3 protein_coding protein_coding MGP_C3HHeJ_T0082150.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26631494 26632495 - MGP_C3HHeJ_P0082150 Pld3 protein_coding protein_coding MGP_C3HHeJ_T0082151.1 MGP_C3HHeJ_G0031622.1 mouse_genomes_project 7 26632565 26644081 - Pld3 protein_coding processed_transcript MGP_C3HHeJ_T0081421.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14780511 14798643 + MGP_C3HHeJ_P0081421 Slc1a5 protein_coding protein_coding MGP_C3HHeJ_T0081422.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14780539 14798643 + Slc1a5 protein_coding retained_intron MGP_C3HHeJ_T0081423.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14781576 14786333 + Slc1a5 protein_coding retained_intron MGP_C3HHeJ_T0081424.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14783913 14794003 + Slc1a5 protein_coding processed_transcript MGP_C3HHeJ_T0081425.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14784814 14786322 + Slc1a5 protein_coding retained_intron MGP_C3HHeJ_T0081426.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14785524 14794093 + Slc1a5 protein_coding retained_intron MGP_C3HHeJ_T0081427.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14793323 14796513 + Slc1a5 protein_coding processed_transcript MGP_C3HHeJ_T0081428.1 MGP_C3HHeJ_G0031417.1 mouse_genomes_project 7 14793473 14796277 + Slc1a5 protein_coding retained_intron MGP_C3HHeJ_T0086817.1 MGP_C3HHeJ_G0032819.1 mouse_genomes_project 7 138034372 138040140 - Mmp21 protein_coding retained_intron MGP_C3HHeJ_T0086818.1 MGP_C3HHeJ_G0032819.1 mouse_genomes_project 7 138034372 138040140 - MGP_C3HHeJ_P0086818 Mmp21 protein_coding protein_coding MGP_C3HHeJ_T0086819.1 MGP_C3HHeJ_G0032819.1 mouse_genomes_project 7 138034458 138040140 - MGP_C3HHeJ_P0086819 Mmp21 protein_coding protein_coding MGP_C3HHeJ_T0082649.1 MGP_C3HHeJ_G0031744.1 mouse_genomes_project 7 30125234 30127068 - MGP_C3HHeJ_P0082649 Tmem147 protein_coding protein_coding MGP_C3HHeJ_T0086883.1 MGP_C3HHeJ_G0032839.1 mouse_genomes_project 7 143363080 143379592 - MGP_C3HHeJ_P0086883 Mapk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0086884.1 MGP_C3HHeJ_G0032839.1 mouse_genomes_project 7 143363090 143379579 - MGP_C3HHeJ_P0086884 Mapk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0086885.1 MGP_C3HHeJ_G0032839.1 mouse_genomes_project 7 143363135 143379576 - MGP_C3HHeJ_P0086885 Mapk1ip1 protein_coding protein_coding MGP_C3HHeJ_T0085053.1 MGP_C3HHeJ_G0032324.1 mouse_genomes_project 7 105926819 105927876 + MGP_C3HHeJ_P0085053 Olfr557 protein_coding protein_coding MGP_C3HHeJ_T0085696.1 MGP_C3HHeJ_G0032596.1 mouse_genomes_project 7 122162363 122169203 - MGP_C3HHeJ_P0085696 Itpripl2 protein_coding protein_coding MGP_C3HHeJ_T0002190.1 MGP_C3HHeJ_G0002111.1 mouse_genomes_project 7 50638078 50641658 + TEC TEC MGP_C3HHeJ_T0085692.1 MGP_C3HHeJ_G0032595.1 mouse_genomes_project 7 122054637 122120787 - MGP_C3HHeJ_P0085692 Syt17 protein_coding protein_coding MGP_C3HHeJ_T0085693.1 MGP_C3HHeJ_G0032595.1 mouse_genomes_project 7 122054640 122116561 - MGP_C3HHeJ_P0085693 Syt17 protein_coding protein_coding MGP_C3HHeJ_T0085694.1 MGP_C3HHeJ_G0032595.1 mouse_genomes_project 7 122054641 122115562 - Syt17 protein_coding retained_intron MGP_C3HHeJ_T0085695.1 MGP_C3HHeJ_G0032595.1 mouse_genomes_project 7 122081557 122121117 - MGP_C3HHeJ_P0085695 Syt17 protein_coding protein_coding MGP_C3HHeJ_T0081488.1 MGP_C3HHeJ_G0031431.1 mouse_genomes_project 7 15170787 15207921 + MGP_C3HHeJ_P0081488 Ceacam3 protein_coding protein_coding MGP_C3HHeJ_T0085039.1 MGP_C3HHeJ_G0032311.1 mouse_genomes_project 7 105701832 105707135 - MGP_C3HHeJ_P0085039 Olfr544 protein_coding protein_coding MGP_C3HHeJ_T0005564.1 MGP_C3HHeJ_G0004676.1 mouse_genomes_project 7 81644491 81645615 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0005565.1 MGP_C3HHeJ_G0004676.1 mouse_genomes_project 7 81644495 81645839 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C3HHeJ_T0100843.1 MGP_C3HHeJ_G0039037.1 mouse_genomes_project 7 100415560 100415669 + Gm24412 snoRNA snoRNA MGP_C3HHeJ_T0010780.1 MGP_C3HHeJ_G0008913.1 mouse_genomes_project 7 46271755 46271814 + Mir7055 miRNA miRNA MGP_C3HHeJ_T0083167.1 MGP_C3HHeJ_G0031868.1 mouse_genomes_project 7 45475356 45510417 + MGP_C3HHeJ_P0083167 Lrrc4b protein_coding protein_coding MGP_C3HHeJ_T0083168.1 MGP_C3HHeJ_G0031868.1 mouse_genomes_project 7 45489723 45512409 + MGP_C3HHeJ_P0083168 Lrrc4b protein_coding protein_coding MGP_C3HHeJ_T0083169.1 MGP_C3HHeJ_G0031868.1 mouse_genomes_project 7 45489975 45510463 + MGP_C3HHeJ_P0083169 Lrrc4b protein_coding protein_coding MGP_C3HHeJ_T0015686.1 MGP_C3HHeJ_G0013790.1 mouse_genomes_project 7 105777540 105777753 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002213.1 MGP_C3HHeJ_G0002134.1 mouse_genomes_project 7 75601929 75603585 + TEC TEC MGP_C3HHeJ_T0082476.1 MGP_C3HHeJ_G0031708.1 mouse_genomes_project 7 29562196 29570099 - MGP_C3HHeJ_P0082476 Capns1 protein_coding protein_coding MGP_C3HHeJ_T0082477.1 MGP_C3HHeJ_G0031708.1 mouse_genomes_project 7 29562244 29568048 - MGP_C3HHeJ_P0082477 Capns1 protein_coding protein_coding MGP_C3HHeJ_T0082478.1 MGP_C3HHeJ_G0031708.1 mouse_genomes_project 7 29562737 29568723 - Capns1 protein_coding processed_transcript MGP_C3HHeJ_T0082479.1 MGP_C3HHeJ_G0031708.1 mouse_genomes_project 7 29562761 29567352 - Capns1 protein_coding processed_transcript MGP_C3HHeJ_T0082480.1 MGP_C3HHeJ_G0031708.1 mouse_genomes_project 7 29565040 29569034 - MGP_C3HHeJ_P0082480 Capns1 protein_coding protein_coding MGP_C3HHeJ_T0082481.1 MGP_C3HHeJ_G0031708.1 mouse_genomes_project 7 29568487 29569971 - Capns1 protein_coding retained_intron MGP_C3HHeJ_T0015687.1 MGP_C3HHeJ_G0013791.1 mouse_genomes_project 7 106364983 106365284 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082265.1 MGP_C3HHeJ_G0031655.1 mouse_genomes_project 7 27740618 27741944 + MGP_C3HHeJ_P0082265 Sycn protein_coding protein_coding MGP_C3HHeJ_T0005154.1 MGP_C3HHeJ_G0004376.1 mouse_genomes_project 7 75720093 75736860 + Gm44686 antisense antisense MGP_C3HHeJ_T0083026.1 MGP_C3HHeJ_G0031822.1 mouse_genomes_project 7 43256401 43258657 - MGP_C3HHeJ_P0083026 4933421I07Rik protein_coding protein_coding MGP_C3HHeJ_T0083027.1 MGP_C3HHeJ_G0031822.1 mouse_genomes_project 7 43257006 43258640 - 4933421I07Rik protein_coding retained_intron MGP_C3HHeJ_T0085331.1 MGP_C3HHeJ_G0032479.1 mouse_genomes_project 7 110289191 110293421 - MGP_C3HHeJ_P0085331 Olfr710 protein_coding protein_coding MGP_C3HHeJ_T0100849.1 MGP_C3HHeJ_G0039043.1 mouse_genomes_project 7 108934028 108934167 - Gm22504 snoRNA snoRNA MGP_C3HHeJ_T0084508.1 MGP_C3HHeJ_G0032190.1 mouse_genomes_project 7 90093435 90164709 - MGP_C3HHeJ_P0084508 Tyr protein_coding protein_coding MGP_C3HHeJ_T0102175.1 MGP_C3HHeJ_G0040139.1 mouse_genomes_project 7 12141955 12145210 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0008889.1 MGP_C3HHeJ_G0007160.1 mouse_genomes_project 7 101478834 101501727 - A630091E08Rik lincRNA lincRNA MGP_C3HHeJ_T0084214.1 MGP_C3HHeJ_G0032110.1 mouse_genomes_project 7 82674792 82690450 + MGP_C3HHeJ_P0084214 Ttll13 protein_coding protein_coding MGP_C3HHeJ_T0084215.1 MGP_C3HHeJ_G0032110.1 mouse_genomes_project 7 82674841 82675221 + Ttll13 protein_coding retained_intron MGP_C3HHeJ_T0084216.1 MGP_C3HHeJ_G0032110.1 mouse_genomes_project 7 82674971 82688825 + Ttll13 protein_coding retained_intron MGP_C3HHeJ_T0084217.1 MGP_C3HHeJ_G0032110.1 mouse_genomes_project 7 82675410 82682535 + Ttll13 protein_coding retained_intron MGP_C3HHeJ_T0084218.1 MGP_C3HHeJ_G0032110.1 mouse_genomes_project 7 82675804 82690299 + MGP_C3HHeJ_P0084218 Ttll13 protein_coding protein_coding MGP_C3HHeJ_T0015588.1 MGP_C3HHeJ_G0013692.1 mouse_genomes_project 7 42376174 42376874 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005207.1 MGP_C3HHeJ_G0004412.1 mouse_genomes_project 7 125121195 125203391 - Gm45077 antisense antisense MGP_C3HHeJ_T0008752.1 MGP_C3HHeJ_G0007063.1 mouse_genomes_project 7 35200549 35210022 - Gm45096 lincRNA lincRNA MGP_C3HHeJ_T0002234.1 MGP_C3HHeJ_G0002154.1 mouse_genomes_project 7 81651552 81655709 + TEC TEC MGP_C3HHeJ_T0083471.1 MGP_C3HHeJ_G0031938.1 mouse_genomes_project 7 46747886 46749469 - MGP_C3HHeJ_P0083471 Fgf21 protein_coding protein_coding MGP_C3HHeJ_T0086866.1 MGP_C3HHeJ_G0032832.1 mouse_genomes_project 7 140049924 140148338 + MGP_C3HHeJ_P0086866 Ptpre protein_coding protein_coding MGP_C3HHeJ_T0102228.1 MGP_C3HHeJ_G0040191.1 mouse_genomes_project 7 43237364 43238267 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101269.1 MGP_C3HHeJ_G0039379.1 mouse_genomes_project 7 130103890 130108261 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101270.1 MGP_C3HHeJ_G0039379.1 mouse_genomes_project 7 130105502 130106459 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0084517.1 MGP_C3HHeJ_G0032193.1 mouse_genomes_project 7 91111353 91173622 + MGP_C3HHeJ_P0084517 Rab38 protein_coding protein_coding MGP_C3HHeJ_T0102306.1 MGP_C3HHeJ_G0040269.1 mouse_genomes_project 7 107140272 107140401 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102247.1 MGP_C3HHeJ_G0040210.1 mouse_genomes_project 7 49019477 49019679 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015540.1 MGP_C3HHeJ_G0013644.1 mouse_genomes_project 7 24250544 24251218 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081117.1 MGP_C3HHeJ_G0031293.1 mouse_genomes_project 7 2911896 2913343 - MGP_C3HHeJ_P0081117 Vmn1r56 protein_coding protein_coding MGP_C3HHeJ_T0083006.1 MGP_C3HHeJ_G0031814.1 mouse_genomes_project 7 42233903 42266880 - MGP_C3HHeJ_P0083006 Gm6871 protein_coding protein_coding MGP_C3HHeJ_T0083007.1 MGP_C3HHeJ_G0031814.1 mouse_genomes_project 7 42233903 42253591 - MGP_C3HHeJ_P0083007 Gm6871 protein_coding protein_coding MGP_C3HHeJ_T0083008.1 MGP_C3HHeJ_G0031814.1 mouse_genomes_project 7 42234673 42253557 - MGP_C3HHeJ_P0083008 Gm6871 protein_coding protein_coding MGP_C3HHeJ_T0083009.1 MGP_C3HHeJ_G0031814.1 mouse_genomes_project 7 42254862 42266850 - MGP_C3HHeJ_P0083009 Gm6871 protein_coding protein_coding MGP_C3HHeJ_T0081535.1 MGP_C3HHeJ_G0031456.1 mouse_genomes_project 7 17361486 17373490 - MGP_C3HHeJ_P0081535 Foxa3 protein_coding protein_coding MGP_C3HHeJ_T0082564.1 MGP_C3HHeJ_G0031728.1 mouse_genomes_project 7 29931917 29945094 - MGP_C3HHeJ_P0082564 Proser3 protein_coding protein_coding MGP_C3HHeJ_T0082565.1 MGP_C3HHeJ_G0031728.1 mouse_genomes_project 7 29931991 29942097 - MGP_C3HHeJ_P0082565 Proser3 protein_coding protein_coding MGP_C3HHeJ_T0082566.1 MGP_C3HHeJ_G0031728.1 mouse_genomes_project 7 29935167 29945157 - Proser3 protein_coding retained_intron MGP_C3HHeJ_T0082567.1 MGP_C3HHeJ_G0031728.1 mouse_genomes_project 7 29941470 29945153 - MGP_C3HHeJ_P0082567 Proser3 protein_coding protein_coding MGP_C3HHeJ_T0081572.1 MGP_C3HHeJ_G0031463.1 mouse_genomes_project 7 17479812 17502114 + MGP_C3HHeJ_P0081572 Fbxo46 protein_coding protein_coding MGP_C3HHeJ_T0081573.1 MGP_C3HHeJ_G0031463.1 mouse_genomes_project 7 17492493 17499730 + MGP_C3HHeJ_P0081573 Fbxo46 protein_coding protein_coding MGP_C3HHeJ_T0100851.1 MGP_C3HHeJ_G0039045.1 mouse_genomes_project 7 112957613 112957745 + Snora3 snoRNA snoRNA MGP_C3HHeJ_T0082441.1 MGP_C3HHeJ_G0031695.1 mouse_genomes_project 7 29265256 29274505 + MGP_C3HHeJ_P0082441 Zfp383 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082442.1 MGP_C3HHeJ_G0031695.1 mouse_genomes_project 7 29265550 29274499 + MGP_C3HHeJ_P0082442 Zfp383 protein_coding protein_coding MGP_C3HHeJ_T0015732.1 MGP_C3HHeJ_G0013836.1 mouse_genomes_project 7 143450689 143451616 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086530.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132013840 132016764 - MGP_C3HHeJ_P0086530 Prss36 protein_coding unknown_likely_coding MGP_C3HHeJ_T0086531.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132013848 132016730 - Prss36 protein_coding processed_transcript MGP_C3HHeJ_T0086532.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132013848 132016690 - Prss36 protein_coding processed_transcript MGP_C3HHeJ_T0086533.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132013848 132027602 - MGP_C3HHeJ_P0086533 Prss36 protein_coding protein_coding MGP_C3HHeJ_T0086534.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132013848 132027602 - MGP_C3HHeJ_P0086534 Prss36 protein_coding protein_coding MGP_C3HHeJ_T0086535.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132014009 132016661 - MGP_C3HHeJ_P0086535 Prss36 protein_coding protein_coding MGP_C3HHeJ_T0086536.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132014112 132016640 - MGP_C3HHeJ_P0086536 Prss36 protein_coding protein_coding MGP_C3HHeJ_T0086537.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132014170 132017308 - Prss36 protein_coding retained_intron MGP_C3HHeJ_T0086538.1 MGP_C3HHeJ_G0032764.1 mouse_genomes_project 7 132014217 132016725 - Prss36 protein_coding processed_transcript MGP_C3HHeJ_T0002235.1 MGP_C3HHeJ_G0002155.1 mouse_genomes_project 7 81673413 81677304 + TEC TEC MGP_C3HHeJ_T0015507.1 MGP_C3HHeJ_G0013611.1 mouse_genomes_project 7 10350622 10351248 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015667.1 MGP_C3HHeJ_G0013771.1 mouse_genomes_project 7 97410483 97410874 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015720.1 MGP_C3HHeJ_G0013824.1 mouse_genomes_project 7 131443698 131443986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082214.1 MGP_C3HHeJ_G0031642.1 mouse_genomes_project 7 27449549 27451978 + MGP_C3HHeJ_P0082214 Eid2b protein_coding protein_coding MGP_C3HHeJ_T0015629.1 MGP_C3HHeJ_G0013733.1 mouse_genomes_project 7 67284513 67284832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010843.1 MGP_C3HHeJ_G0008976.1 mouse_genomes_project 7 144577193 144577259 - Mir7062 miRNA miRNA MGP_C3HHeJ_T0005219.1 MGP_C3HHeJ_G0004420.1 mouse_genomes_project 7 131037589 131041413 + Gm31749 antisense antisense MGP_C3HHeJ_T0002254.1 MGP_C3HHeJ_G0002174.1 mouse_genomes_project 7 125063807 125064439 - TEC TEC MGP_C3HHeJ_T0015626.1 MGP_C3HHeJ_G0013730.1 mouse_genomes_project 7 65682690 65682951 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085858.1 MGP_C3HHeJ_G0032640.1 mouse_genomes_project 7 125202148 125209464 + MGP_C3HHeJ_P0085858 Hs3st2 protein_coding protein_coding MGP_C3HHeJ_T0085859.1 MGP_C3HHeJ_G0032640.1 mouse_genomes_project 7 125202579 125315753 + MGP_C3HHeJ_P0085859 Hs3st2 protein_coding protein_coding MGP_C3HHeJ_T0086414.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633067 131638348 + Phkg2 protein_coding retained_intron MGP_C3HHeJ_T0086415.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633107 131642706 + MGP_C3HHeJ_P0086415 Phkg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086416.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633129 131642706 + MGP_C3HHeJ_P0086416 Phkg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086417.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633131 131639545 + Phkg2 protein_coding retained_intron MGP_C3HHeJ_T0086418.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633131 131643566 + MGP_C3HHeJ_P0086418 Phkg2 protein_coding protein_coding MGP_C3HHeJ_T0086419.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633256 131643564 + MGP_C3HHeJ_P0086419 Phkg2 protein_coding protein_coding MGP_C3HHeJ_T0086420.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633310 131643564 + MGP_C3HHeJ_P0086420 Phkg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086421.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131633369 131642657 + Phkg2 protein_coding retained_intron MGP_C3HHeJ_T0086422.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131637701 131643559 + MGP_C3HHeJ_P0086422 Phkg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086423.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131639540 131642678 + Phkg2 protein_coding retained_intron MGP_C3HHeJ_T0086424.1 MGP_C3HHeJ_G0032742.1 mouse_genomes_project 7 131642354 131642945 + Phkg2 protein_coding retained_intron MGP_C3HHeJ_T0098172.1 MGP_C3HHeJ_G0036384.1 mouse_genomes_project 7 14455598 14455718 + n-R5s151 rRNA rRNA MGP_C3HHeJ_T0083646.1 MGP_C3HHeJ_G0031986.1 mouse_genomes_project 7 48410525 48434883 - MGP_C3HHeJ_P0083646 Mrgpra6 protein_coding protein_coding MGP_C3HHeJ_T0083647.1 MGP_C3HHeJ_G0031986.1 mouse_genomes_project 7 48410535 48414477 - MGP_C3HHeJ_P0083647 Mrgpra6 protein_coding protein_coding MGP_C3HHeJ_T0083120.1 MGP_C3HHeJ_G0031854.1 mouse_genomes_project 7 44959909 44966594 + MGP_C3HHeJ_P0083120 Klk15 protein_coding protein_coding MGP_C3HHeJ_T0083121.1 MGP_C3HHeJ_G0031854.1 mouse_genomes_project 7 44959962 44965685 + MGP_C3HHeJ_P0083121 Klk15 protein_coding protein_coding MGP_C3HHeJ_T0085539.1 MGP_C3HHeJ_G0032568.1 mouse_genomes_project 7 115951803 116118555 + MGP_C3HHeJ_P0085539 Parva protein_coding protein_coding MGP_C3HHeJ_T0085540.1 MGP_C3HHeJ_G0032568.1 mouse_genomes_project 7 115952004 116120615 + MGP_C3HHeJ_P0085540 Parva protein_coding protein_coding MGP_C3HHeJ_T0085541.1 MGP_C3HHeJ_G0032568.1 mouse_genomes_project 7 115952203 116080610 + MGP_C3HHeJ_P0085541 Parva protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085542.1 MGP_C3HHeJ_G0032568.1 mouse_genomes_project 7 116027613 116073954 + Parva protein_coding processed_transcript MGP_C3HHeJ_T0085543.1 MGP_C3HHeJ_G0032568.1 mouse_genomes_project 7 116047420 116117896 + MGP_C3HHeJ_P0085543 Parva protein_coding protein_coding MGP_C3HHeJ_T0085544.1 MGP_C3HHeJ_G0032568.1 mouse_genomes_project 7 116096928 116108360 + Parva protein_coding processed_transcript MGP_C3HHeJ_T0098545.1 MGP_C3HHeJ_G0036745.1 mouse_genomes_project 7 128100876 128208000 + Gm15338 sense_intronic sense_intronic MGP_C3HHeJ_T0084633.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100373765 100437270 + MGP_C3HHeJ_P0084633 protein_coding protein_coding MGP_C3HHeJ_T0084634.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100373812 100407990 + protein_coding retained_intron MGP_C3HHeJ_T0084635.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100373822 100390678 + protein_coding retained_intron MGP_C3HHeJ_T0084636.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100396313 100401609 + MGP_C3HHeJ_P0084636 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084637.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100423829 100429939 + protein_coding retained_intron MGP_C3HHeJ_T0084638.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100429774 100437138 + protein_coding retained_intron MGP_C3HHeJ_T0084639.1 MGP_C3HHeJ_G0032226.1 mouse_genomes_project 7 100430005 100437271 + protein_coding retained_intron MGP_C3HHeJ_T0085601.1 MGP_C3HHeJ_G0032583.1 mouse_genomes_project 7 118307525 118312246 + MGP_C3HHeJ_P0085601 Calcb protein_coding protein_coding MGP_C3HHeJ_T0085602.1 MGP_C3HHeJ_G0032583.1 mouse_genomes_project 7 118307557 118311944 + MGP_C3HHeJ_P0085602 Calcb protein_coding protein_coding MGP_C3HHeJ_T0085603.1 MGP_C3HHeJ_G0032583.1 mouse_genomes_project 7 118308392 118309021 + MGP_C3HHeJ_P0085603 Calcb protein_coding protein_coding MGP_C3HHeJ_T0086631.1 MGP_C3HHeJ_G0032781.1 mouse_genomes_project 7 132657924 132681575 + MGP_C3HHeJ_P0086631 Bag3 protein_coding protein_coding MGP_C3HHeJ_T0099575.1 MGP_C3HHeJ_G0037769.1 mouse_genomes_project 7 47029548 47029633 - Gm22098 snRNA snRNA MGP_C3HHeJ_T0015523.1 MGP_C3HHeJ_G0013627.1 mouse_genomes_project 7 14682335 14682888 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0084382.1 MGP_C3HHeJ_G0032136.1 mouse_genomes_project 7 84083586 84110032 + MGP_C3HHeJ_P0084382 Whamm protein_coding protein_coding MGP_C3HHeJ_T0085134.1 MGP_C3HHeJ_G0032400.1 mouse_genomes_project 7 107437531 107439829 - MGP_C3HHeJ_P0085134 Ubqlnl protein_coding protein_coding MGP_C3HHeJ_T0082035.1 MGP_C3HHeJ_G0031593.1 mouse_genomes_project 7 25415403 25460076 + MGP_C3HHeJ_P0082035 Nlrp4a protein_coding protein_coding MGP_C3HHeJ_T0085217.1 MGP_C3HHeJ_G0032447.1 mouse_genomes_project 7 108697518 108743358 + MGP_C3HHeJ_P0085217 Cckbr protein_coding protein_coding MGP_C3HHeJ_T0085218.1 MGP_C3HHeJ_G0032447.1 mouse_genomes_project 7 108697521 108707889 + MGP_C3HHeJ_P0085218 Cckbr protein_coding protein_coding MGP_C3HHeJ_T0083565.1 MGP_C3HHeJ_G0031966.1 mouse_genomes_project 7 47290480 47373854 - MGP_C3HHeJ_P0083565 Abcc8 protein_coding protein_coding MGP_C3HHeJ_T0083566.1 MGP_C3HHeJ_G0031966.1 mouse_genomes_project 7 47290481 47373770 - MGP_C3HHeJ_P0083566 Abcc8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010829.1 MGP_C3HHeJ_G0008962.1 mouse_genomes_project 7 130327599 130327674 - Mir7058 miRNA miRNA MGP_C3HHeJ_T0085006.1 MGP_C3HHeJ_G0032305.1 mouse_genomes_project 7 105316209 105412221 - MGP_C3HHeJ_P0085006 Nup98 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085007.1 MGP_C3HHeJ_G0032305.1 mouse_genomes_project 7 105330087 105412246 - MGP_C3HHeJ_P0085007 Nup98 protein_coding protein_coding MGP_C3HHeJ_T0086577.1 MGP_C3HHeJ_G0032773.1 mouse_genomes_project 7 132339716 132343283 - MGP_C3HHeJ_P0086577 9130023H24Rik protein_coding protein_coding MGP_C3HHeJ_T0081392.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14224724 14226452 - Ccdc9 protein_coding retained_intron MGP_C3HHeJ_T0081393.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14224995 14238135 - MGP_C3HHeJ_P0081393 Ccdc9 protein_coding protein_coding MGP_C3HHeJ_T0081394.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14226142 14236473 - MGP_C3HHeJ_P0081394 Ccdc9 protein_coding protein_coding MGP_C3HHeJ_T0081395.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14226155 14232105 - Ccdc9 protein_coding retained_intron MGP_C3HHeJ_T0081396.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14226550 14229067 - MGP_C3HHeJ_P0081396 Ccdc9 protein_coding protein_coding MGP_C3HHeJ_T0081397.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14226695 14227379 - Ccdc9 protein_coding retained_intron MGP_C3HHeJ_T0081398.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14227275 14232574 - Ccdc9 protein_coding retained_intron MGP_C3HHeJ_T0081399.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14232033 14233215 - Ccdc9 protein_coding processed_transcript MGP_C3HHeJ_T0081400.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14233919 14238194 - MGP_C3HHeJ_P0081400 Ccdc9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081401.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14233928 14236950 - MGP_C3HHeJ_P0081401 Ccdc9 protein_coding protein_coding MGP_C3HHeJ_T0081402.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14233979 14238188 - MGP_C3HHeJ_P0081402 Ccdc9 protein_coding protein_coding MGP_C3HHeJ_T0081403.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14234100 14238187 - Ccdc9 protein_coding retained_intron MGP_C3HHeJ_T0081404.1 MGP_C3HHeJ_G0031407.1 mouse_genomes_project 7 14234233 14237439 - MGP_C3HHeJ_P0081404 Ccdc9 protein_coding protein_coding MGP_C3HHeJ_T0008950.1 MGP_C3HHeJ_G0007196.1 mouse_genomes_project 7 131758172 131766790 + Gm44514 lincRNA lincRNA MGP_C3HHeJ_T0008951.1 MGP_C3HHeJ_G0007196.1 mouse_genomes_project 7 131762905 131767400 + Gm44514 lincRNA lincRNA MGP_C3HHeJ_T0085188.1 MGP_C3HHeJ_G0032425.1 mouse_genomes_project 7 108101461 108102412 + MGP_C3HHeJ_P0085188 Olfr665 protein_coding protein_coding MGP_C3HHeJ_T0082831.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34334741 34382228 - MGP_C3HHeJ_P0082831 4931406P16Rik protein_coding protein_coding MGP_C3HHeJ_T0082832.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34334933 34341061 - MGP_C3HHeJ_P0082832 4931406P16Rik protein_coding protein_coding MGP_C3HHeJ_T0082833.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34335934 34340872 - 4931406P16Rik protein_coding retained_intron MGP_C3HHeJ_T0082835.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34349966 34353144 - 4931406P16Rik protein_coding retained_intron MGP_C3HHeJ_T0082836.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34380989 34412466 - 4931406P16Rik protein_coding retained_intron MGP_C3HHeJ_T0082837.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34382508 34412461 - 4931406P16Rik protein_coding processed_transcript MGP_C3HHeJ_T0082838.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34382594 34404428 - 4931406P16Rik protein_coding processed_transcript MGP_C3HHeJ_T0082839.1 MGP_C3HHeJ_G0031779.1 mouse_genomes_project 7 34410982 34412424 - 4931406P16Rik protein_coding processed_transcript MGP_C3HHeJ_T0015628.1 MGP_C3HHeJ_G0013732.1 mouse_genomes_project 7 67059253 67059827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002165.1 MGP_C3HHeJ_G0002086.1 mouse_genomes_project 7 34346187 34347280 - TEC TEC MGP_C3HHeJ_T0083085.1 MGP_C3HHeJ_G0031838.1 mouse_genomes_project 7 44582207 44596353 + MGP_C3HHeJ_P0083085 Zfp719 protein_coding protein_coding MGP_C3HHeJ_T0083086.1 MGP_C3HHeJ_G0031838.1 mouse_genomes_project 7 44582216 44592693 + MGP_C3HHeJ_P0083086 Zfp719 protein_coding protein_coding MGP_C3HHeJ_T0083087.1 MGP_C3HHeJ_G0031838.1 mouse_genomes_project 7 44582236 44587626 + Zfp719 protein_coding retained_intron MGP_C3HHeJ_T0083648.1 MGP_C3HHeJ_G0031987.1 mouse_genomes_project 7 48462005 48481159 - MGP_C3HHeJ_P0083648 Mrgpra9 protein_coding protein_coding MGP_C3HHeJ_T0015710.1 MGP_C3HHeJ_G0013814.1 mouse_genomes_project 7 128995001 128995658 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086705.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135087600 135136726 + MGP_C3HHeJ_P0086705 Plekha1 protein_coding protein_coding MGP_C3HHeJ_T0086706.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135087729 135118166 + Plekha1 protein_coding retained_intron MGP_C3HHeJ_T0086707.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135087731 135101538 + Plekha1 protein_coding retained_intron MGP_C3HHeJ_T0086708.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135087742 135135482 + MGP_C3HHeJ_P0086708 Plekha1 protein_coding protein_coding MGP_C3HHeJ_T0086709.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135087747 135133235 + MGP_C3HHeJ_P0086709 Plekha1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086710.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135087754 135136716 + MGP_C3HHeJ_P0086710 Plekha1 protein_coding protein_coding MGP_C3HHeJ_T0086711.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135105776 135108945 + Plekha1 protein_coding retained_intron MGP_C3HHeJ_T0086712.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135120415 135128840 + Plekha1 protein_coding retained_intron MGP_C3HHeJ_T0086713.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135123947 135133090 + Plekha1 protein_coding processed_transcript MGP_C3HHeJ_T0086714.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135125658 135132314 + Plekha1 protein_coding retained_intron MGP_C3HHeJ_T0086715.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135128317 135134577 + MGP_C3HHeJ_P0086715 Plekha1 protein_coding protein_coding MGP_C3HHeJ_T0086716.1 MGP_C3HHeJ_G0032792.1 mouse_genomes_project 7 135128717 135134315 + Plekha1 protein_coding retained_intron MGP_C3HHeJ_T0083709.1 MGP_C3HHeJ_G0032007.1 mouse_genomes_project 7 52099380 52100721 + MGP_C3HHeJ_P0083709 4933405O20Rik protein_coding protein_coding MGP_C3HHeJ_T0102213.1 MGP_C3HHeJ_G0040176.1 mouse_genomes_project 7 33616683 33617869 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0102283.1 MGP_C3HHeJ_G0040246.1 mouse_genomes_project 7 88378209 88378529 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081241.1 MGP_C3HHeJ_G0031357.1 mouse_genomes_project 7 10494480 10498137 + MGP_C3HHeJ_P0081241 Rnf225 protein_coding protein_coding MGP_C3HHeJ_T0085184.1 MGP_C3HHeJ_G0032421.1 mouse_genomes_project 7 107824403 107825364 + MGP_C3HHeJ_P0085184 protein_coding protein_coding MGP_C3HHeJ_T0085379.1 MGP_C3HHeJ_G0032520.1 mouse_genomes_project 7 111906074 111907133 - MGP_C3HHeJ_P0085379 Olfr502 protein_coding protein_coding MGP_C3HHeJ_T0081695.1 MGP_C3HHeJ_G0031497.1 mouse_genomes_project 7 18113487 18147589 - MGP_C3HHeJ_P0081695 Nectin2 protein_coding protein_coding MGP_C3HHeJ_T0081696.1 MGP_C3HHeJ_G0031497.1 mouse_genomes_project 7 18121048 18147589 - MGP_C3HHeJ_P0081696 Nectin2 protein_coding protein_coding MGP_C3HHeJ_T0081960.1 MGP_C3HHeJ_G0031574.1 mouse_genomes_project 7 24504470 24505743 - MGP_C3HHeJ_P0081960 Erich4 protein_coding protein_coding MGP_C3HHeJ_T0085325.1 MGP_C3HHeJ_G0032473.1 mouse_genomes_project 7 110180956 110181916 + MGP_C3HHeJ_P0085325 Olfr703 protein_coding protein_coding MGP_C3HHeJ_T0011583.1 MGP_C3HHeJ_G0009716.1 mouse_genomes_project 7 10992158 10992438 + Gm24909 misc_RNA misc_RNA MGP_C3HHeJ_T0083333.1 MGP_C3HHeJ_G0031906.1 mouse_genomes_project 7 46190265 46201743 - MGP_C3HHeJ_P0083333 Fcgrt protein_coding protein_coding MGP_C3HHeJ_T0002251.1 MGP_C3HHeJ_G0002171.1 mouse_genomes_project 7 120034655 120035612 - TEC TEC MGP_C3HHeJ_T0086326.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131212503 131225556 - MGP_C3HHeJ_P0086326 Tbc1d10b protein_coding protein_coding MGP_C3HHeJ_T0086327.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131213766 131219825 - MGP_C3HHeJ_P0086327 Tbc1d10b protein_coding protein_coding MGP_C3HHeJ_T0086328.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131214101 131215030 - Tbc1d10b protein_coding retained_intron MGP_C3HHeJ_T0086329.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131214406 131224835 - Tbc1d10b protein_coding processed_transcript MGP_C3HHeJ_T0086330.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131214866 131215999 - Tbc1d10b protein_coding retained_intron MGP_C3HHeJ_T0086331.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131214911 131219725 - Tbc1d10b protein_coding retained_intron MGP_C3HHeJ_T0086332.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131215297 131219766 - Tbc1d10b protein_coding retained_intron MGP_C3HHeJ_T0086333.1 MGP_C3HHeJ_G0032722.1 mouse_genomes_project 7 131219024 131219546 - Tbc1d10b protein_coding retained_intron MGP_C3HHeJ_T0085182.1 MGP_C3HHeJ_G0032419.1 mouse_genomes_project 7 107806672 107807663 + MGP_C3HHeJ_P0085182 Olfr656 protein_coding protein_coding MGP_C3HHeJ_T0005221.1 MGP_C3HHeJ_G0004422.1 mouse_genomes_project 7 131617967 131632844 - Gm28198 antisense antisense MGP_C3HHeJ_T0085998.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129640861 129651159 + D430042O09Rik protein_coding retained_intron MGP_C3HHeJ_T0085999.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129640886 129807080 + MGP_C3HHeJ_P0085999 D430042O09Rik protein_coding protein_coding MGP_C3HHeJ_T0086000.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129640935 129694992 + MGP_C3HHeJ_P0086000 D430042O09Rik protein_coding protein_coding MGP_C3HHeJ_T0086001.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129719119 129794268 + D430042O09Rik protein_coding processed_transcript MGP_C3HHeJ_T0086002.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129761938 129807073 + D430042O09Rik protein_coding retained_intron MGP_C3HHeJ_T0086003.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129792953 129804532 + MGP_C3HHeJ_P0086003 D430042O09Rik protein_coding protein_coding MGP_C3HHeJ_T0086004.1 MGP_C3HHeJ_G0032669.1 mouse_genomes_project 7 129797548 129800253 + D430042O09Rik protein_coding retained_intron MGP_C3HHeJ_T0102151.1 MGP_C3HHeJ_G0040115.1 mouse_genomes_project 7 7805523 7806402 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083071.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44489322 44503184 - MGP_C3HHeJ_P0083071 4931406B18Rik protein_coding protein_coding MGP_C3HHeJ_T0083072.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44491100 44502878 - MGP_C3HHeJ_P0083072 4931406B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083073.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44491846 44503173 - MGP_C3HHeJ_P0083073 4931406B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083074.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44493910 44501468 - MGP_C3HHeJ_P0083074 4931406B18Rik protein_coding protein_coding MGP_C3HHeJ_T0083075.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44494992 44503179 - 4931406B18Rik protein_coding retained_intron MGP_C3HHeJ_T0083076.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44495640 44503186 - MGP_C3HHeJ_P0083076 4931406B18Rik protein_coding protein_coding MGP_C3HHeJ_T0083077.1 MGP_C3HHeJ_G0031835.1 mouse_genomes_project 7 44498484 44502940 - MGP_C3HHeJ_P0083077 4931406B18Rik protein_coding protein_coding MGP_C3HHeJ_T0101473.1 MGP_C3HHeJ_G0039476.1 mouse_genomes_project 7 28872286 28896085 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101474.1 MGP_C3HHeJ_G0039476.1 mouse_genomes_project 7 28874222 28889295 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0081836.1 MGP_C3HHeJ_G0031547.1 mouse_genomes_project 7 23493115 23509294 - MGP_C3HHeJ_P0081836 Cd177 protein_coding protein_coding MGP_C3HHeJ_T0081837.1 MGP_C3HHeJ_G0031547.1 mouse_genomes_project 7 23494259 23500048 - Cd177 protein_coding retained_intron MGP_C3HHeJ_T0084768.1 MGP_C3HHeJ_G0032254.1 mouse_genomes_project 7 102653135 102710286 - MGP_C3HHeJ_P0084768 Slco2b1 protein_coding protein_coding MGP_C3HHeJ_T0084769.1 MGP_C3HHeJ_G0032254.1 mouse_genomes_project 7 102653721 102694094 - MGP_C3HHeJ_P0084769 Slco2b1 protein_coding protein_coding MGP_C3HHeJ_T0084770.1 MGP_C3HHeJ_G0032254.1 mouse_genomes_project 7 102653721 102706076 - MGP_C3HHeJ_P0084770 Slco2b1 protein_coding protein_coding MGP_C3HHeJ_T0084771.1 MGP_C3HHeJ_G0032254.1 mouse_genomes_project 7 102655189 102660253 - MGP_C3HHeJ_P0084771 Slco2b1 protein_coding protein_coding MGP_C3HHeJ_T0084772.1 MGP_C3HHeJ_G0032254.1 mouse_genomes_project 7 102685993 102693913 - MGP_C3HHeJ_P0084772 Slco2b1 protein_coding protein_coding MGP_C3HHeJ_T0084773.1 MGP_C3HHeJ_G0032254.1 mouse_genomes_project 7 102687593 102693867 - MGP_C3HHeJ_P0084773 Slco2b1 protein_coding protein_coding MGP_C3HHeJ_T0005196.1 MGP_C3HHeJ_G0004404.1 mouse_genomes_project 7 114099069 114112131 - Gm28863 antisense antisense MGP_C3HHeJ_T0015514.1 MGP_C3HHeJ_G0013618.1 mouse_genomes_project 7 11738718 11738896 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086506.1 MGP_C3HHeJ_G0032757.1 mouse_genomes_project 7 131951535 131953831 + Zfp646 protein_coding retained_intron MGP_C3HHeJ_T0086507.1 MGP_C3HHeJ_G0032757.1 mouse_genomes_project 7 131952110 131955503 + MGP_C3HHeJ_P0086507 Zfp646 protein_coding protein_coding MGP_C3HHeJ_T0086508.1 MGP_C3HHeJ_G0032757.1 mouse_genomes_project 7 131953015 131962440 + MGP_C3HHeJ_P0086508 Zfp646 protein_coding protein_coding MGP_C3HHeJ_T0086509.1 MGP_C3HHeJ_G0032757.1 mouse_genomes_project 7 131954625 131962436 + MGP_C3HHeJ_P0086509 Zfp646 protein_coding protein_coding MGP_C3HHeJ_T0085978.1 MGP_C3HHeJ_G0032665.1 mouse_genomes_project 7 129394321 129418278 - MGP_C3HHeJ_P0085978 Nsmce1 protein_coding protein_coding MGP_C3HHeJ_T0085979.1 MGP_C3HHeJ_G0032665.1 mouse_genomes_project 7 129397792 129418081 - MGP_C3HHeJ_P0085979 Nsmce1 protein_coding protein_coding MGP_C3HHeJ_T0085980.1 MGP_C3HHeJ_G0032665.1 mouse_genomes_project 7 129397846 129405234 - Nsmce1 protein_coding processed_transcript MGP_C3HHeJ_T0086451.1 MGP_C3HHeJ_G0032747.1 mouse_genomes_project 7 131781229 131786700 + MGP_C3HHeJ_P0086451 Ctf1 protein_coding protein_coding MGP_C3HHeJ_T0086452.1 MGP_C3HHeJ_G0032747.1 mouse_genomes_project 7 131781430 131785838 + MGP_C3HHeJ_P0086452 Ctf1 protein_coding protein_coding MGP_C3HHeJ_T0086453.1 MGP_C3HHeJ_G0032747.1 mouse_genomes_project 7 131781437 131786098 + MGP_C3HHeJ_P0086453 Ctf1 protein_coding protein_coding MGP_C3HHeJ_T0086454.1 MGP_C3HHeJ_G0032747.1 mouse_genomes_project 7 131781793 131785534 + Ctf1 protein_coding processed_transcript MGP_C3HHeJ_T0086455.1 MGP_C3HHeJ_G0032747.1 mouse_genomes_project 7 131782050 131785547 + Ctf1 protein_coding processed_transcript MGP_C3HHeJ_T0083650.1 MGP_C3HHeJ_G0031989.1 mouse_genomes_project 7 48554810 48555978 - MGP_C3HHeJ_P0083650 protein_coding protein_coding MGP_C3HHeJ_T0083651.1 MGP_C3HHeJ_G0031989.1 mouse_genomes_project 7 48554811 48837695 - MGP_C3HHeJ_P0083651 protein_coding protein_coding MGP_C3HHeJ_T0002230.1 MGP_C3HHeJ_G0002150.1 mouse_genomes_project 7 79699992 79700848 + TEC TEC MGP_C3HHeJ_T0010781.1 MGP_C3HHeJ_G0008914.1 mouse_genomes_project 7 48303472 48303531 - Mir7056 miRNA miRNA MGP_C3HHeJ_T0002259.1 MGP_C3HHeJ_G0002179.1 mouse_genomes_project 7 126223427 126225237 + TEC TEC MGP_C3HHeJ_T0081855.1 MGP_C3HHeJ_G0031552.1 mouse_genomes_project 7 23681705 23686522 + MGP_C3HHeJ_P0081855 Cd79a protein_coding protein_coding MGP_C3HHeJ_T0101471.1 MGP_C3HHeJ_G0039475.1 mouse_genomes_project 7 15847863 15857225 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101472.1 MGP_C3HHeJ_G0039475.1 mouse_genomes_project 7 15847863 15857594 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0011604.1 MGP_C3HHeJ_G0009737.1 mouse_genomes_project 7 147360443 147360514 + Gm27483 misc_RNA misc_RNA MGP_C3HHeJ_T0002161.1 MGP_C3HHeJ_G0002082.1 mouse_genomes_project 7 17193170 17194407 + TEC TEC MGP_C3HHeJ_T0081622.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17757617 17772955 + MGP_C3HHeJ_P0081622 Ercc2 protein_coding protein_coding MGP_C3HHeJ_T0081623.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17757625 17761316 + Ercc2 protein_coding processed_transcript MGP_C3HHeJ_T0081624.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17757638 17772953 + MGP_C3HHeJ_P0081624 Ercc2 protein_coding protein_coding MGP_C3HHeJ_T0081625.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17757647 17772955 + MGP_C3HHeJ_P0081625 Ercc2 protein_coding protein_coding MGP_C3HHeJ_T0081626.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17757814 17761521 + Ercc2 protein_coding processed_transcript MGP_C3HHeJ_T0081627.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17757875 17771722 + MGP_C3HHeJ_P0081627 Ercc2 protein_coding protein_coding MGP_C3HHeJ_T0081628.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17765506 17770941 + Ercc2 protein_coding processed_transcript MGP_C3HHeJ_T0081629.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17767691 17769178 + Ercc2 protein_coding retained_intron MGP_C3HHeJ_T0081630.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17770717 17772047 + Ercc2 protein_coding retained_intron MGP_C3HHeJ_T0081631.1 MGP_C3HHeJ_G0031477.1 mouse_genomes_project 7 17770921 17771326 + Ercc2 protein_coding retained_intron MGP_C3HHeJ_T0082443.1 MGP_C3HHeJ_G0031696.1 mouse_genomes_project 7 29285381 29298288 - MGP_C3HHeJ_P0082443 protein_coding protein_coding MGP_C3HHeJ_T0082444.1 MGP_C3HHeJ_G0031696.1 mouse_genomes_project 7 29286243 29309994 - MGP_C3HHeJ_P0082444 protein_coding protein_coding MGP_C3HHeJ_T0082445.1 MGP_C3HHeJ_G0031696.1 mouse_genomes_project 7 29288774 29309801 - MGP_C3HHeJ_P0082445 protein_coding unknown_likely_coding MGP_C3HHeJ_T0082446.1 MGP_C3HHeJ_G0031696.1 mouse_genomes_project 7 29292477 29309996 - protein_coding processed_transcript MGP_C3HHeJ_T0015737.1 MGP_C3HHeJ_G0013841.1 mouse_genomes_project 7 147544650 147545247 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087114.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145882558 145885357 + MGP_C3HHeJ_P0087114 Rassf7 protein_coding protein_coding MGP_C3HHeJ_T0087115.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145882573 145884699 + Rassf7 protein_coding processed_transcript MGP_C3HHeJ_T0087116.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145882597 145884212 + Rassf7 protein_coding processed_transcript MGP_C3HHeJ_T0087117.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145882676 145884177 + MGP_C3HHeJ_P0087117 Rassf7 protein_coding protein_coding MGP_C3HHeJ_T0087118.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145882901 145884171 + MGP_C3HHeJ_P0087118 Rassf7 protein_coding protein_coding MGP_C3HHeJ_T0087119.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145883333 145884304 + MGP_C3HHeJ_P0087119 Rassf7 protein_coding protein_coding MGP_C3HHeJ_T0087120.1 MGP_C3HHeJ_G0032914.1 mouse_genomes_project 7 145883398 145884412 + MGP_C3HHeJ_P0087120 Rassf7 protein_coding protein_coding MGP_C3HHeJ_T0018168.1 MGP_C3HHeJ_G0015439.1 mouse_genomes_project 7 77518211 77529239 + 1500012K07Rik processed_transcript lincRNA MGP_C3HHeJ_T0018169.1 MGP_C3HHeJ_G0015439.1 mouse_genomes_project 7 77518217 77541330 + 1500012K07Rik processed_transcript lincRNA MGP_C3HHeJ_T0018170.1 MGP_C3HHeJ_G0015439.1 mouse_genomes_project 7 77518217 77542910 + 1500012K07Rik processed_transcript antisense MGP_C3HHeJ_T0102282.1 MGP_C3HHeJ_G0040245.1 mouse_genomes_project 7 88370113 88370832 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010839.1 MGP_C3HHeJ_G0008972.1 mouse_genomes_project 7 140023446 140023567 + Mir1962 miRNA miRNA MGP_C3HHeJ_T0087241.1 MGP_C3HHeJ_G0032931.1 mouse_genomes_project 7 146151767 146155888 + MGP_C3HHeJ_P0087241 Cd151 protein_coding protein_coding MGP_C3HHeJ_T0087242.1 MGP_C3HHeJ_G0032931.1 mouse_genomes_project 7 146151767 146155888 + MGP_C3HHeJ_P0087242 Cd151 protein_coding protein_coding MGP_C3HHeJ_T0087243.1 MGP_C3HHeJ_G0032931.1 mouse_genomes_project 7 146153194 146155888 + MGP_C3HHeJ_P0087243 Cd151 protein_coding protein_coding MGP_C3HHeJ_T0084129.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81765260 81775221 + MGP_C3HHeJ_P0084129 Fanci protein_coding protein_coding MGP_C3HHeJ_T0084130.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81765621 81782953 + MGP_C3HHeJ_P0084130 Fanci protein_coding protein_coding MGP_C3HHeJ_T0084131.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81765625 81824926 + MGP_C3HHeJ_P0084131 Fanci protein_coding protein_coding MGP_C3HHeJ_T0084132.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81765666 81824926 + MGP_C3HHeJ_P0084132 Fanci protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084133.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81772472 81809545 + MGP_C3HHeJ_P0084133 Fanci protein_coding protein_coding MGP_C3HHeJ_T0084134.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81786467 81801065 + MGP_C3HHeJ_P0084134 Fanci protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084135.1 MGP_C3HHeJ_G0032092.1 mouse_genomes_project 7 81815318 81820387 + MGP_C3HHeJ_P0084135 Fanci protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099570.1 MGP_C3HHeJ_G0037764.1 mouse_genomes_project 7 38103028 38103134 - Gm22302 snRNA snRNA MGP_C3HHeJ_T0086168.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774147 130777707 + MGP_C3HHeJ_P0086168 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086169.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774167 130777704 + MGP_C3HHeJ_P0086169 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086170.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774170 130775294 + MGP_C3HHeJ_P0086170 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086171.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774191 130775619 + Ypel3 protein_coding processed_transcript MGP_C3HHeJ_T0086172.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774191 130777706 + Ypel3 protein_coding processed_transcript MGP_C3HHeJ_T0086173.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774193 130777707 + MGP_C3HHeJ_P0086173 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086174.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774197 130777258 + MGP_C3HHeJ_P0086174 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086175.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774339 130775067 + MGP_C3HHeJ_P0086175 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086176.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774405 130777639 + MGP_C3HHeJ_P0086176 Ypel3 protein_coding protein_coding MGP_C3HHeJ_T0086177.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774700 130777424 + Ypel3 protein_coding processed_transcript MGP_C3HHeJ_T0086178.1 MGP_C3HHeJ_G0032695.1 mouse_genomes_project 7 130774773 130775486 + Ypel3 protein_coding retained_intron MGP_C3HHeJ_T0005226.1 MGP_C3HHeJ_G0004426.1 mouse_genomes_project 7 132283711 132285429 - Gm45108 antisense antisense MGP_C3HHeJ_T0010757.1 MGP_C3HHeJ_G0008890.1 mouse_genomes_project 7 23782549 23782613 - Mir7047 miRNA miRNA MGP_C3HHeJ_T0084691.1 MGP_C3HHeJ_G0032235.1 mouse_genomes_project 7 101072834 101074978 - MGP_C3HHeJ_P0084691 Omp protein_coding protein_coding MGP_C3HHeJ_T0082733.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500001 30503918 - MGP_C3HHeJ_P0082733 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082734.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500001 30503733 - MGP_C3HHeJ_P0082734 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082735.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500003 30501856 - Fxyd1 protein_coding retained_intron MGP_C3HHeJ_T0082736.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500003 30503991 - MGP_C3HHeJ_P0082736 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082737.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500003 30503124 - MGP_C3HHeJ_P0082737 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082738.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500004 30501446 - MGP_C3HHeJ_P0082738 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082739.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500004 30503980 - MGP_C3HHeJ_P0082739 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082740.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500005 30500517 - Fxyd1 protein_coding retained_intron MGP_C3HHeJ_T0082741.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500005 30503131 - MGP_C3HHeJ_P0082741 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082742.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500005 30503112 - MGP_C3HHeJ_P0082742 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082743.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500006 30503142 - MGP_C3HHeJ_P0082743 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082744.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500031 30503906 - MGP_C3HHeJ_P0082744 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082745.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500051 30503143 - MGP_C3HHeJ_P0082745 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082746.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500258 30504032 - MGP_C3HHeJ_P0082746 Fxyd1 protein_coding protein_coding MGP_C3HHeJ_T0082747.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30500451 30502369 - Fxyd1 protein_coding retained_intron MGP_C3HHeJ_T0082748.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30501812 30503947 - Fxyd1 protein_coding retained_intron MGP_C3HHeJ_T0082749.1 MGP_C3HHeJ_G0031759.1 mouse_genomes_project 7 30502086 30505505 - Fxyd1 protein_coding retained_intron MGP_C3HHeJ_T0081051.1 MGP_C3HHeJ_G0031262.1 mouse_genomes_project 7 1729771 1750398 - MGP_C3HHeJ_P0081051 Fam71e2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081052.1 MGP_C3HHeJ_G0031262.1 mouse_genomes_project 7 1729774 1750398 - MGP_C3HHeJ_P0081052 Fam71e2 protein_coding protein_coding MGP_C3HHeJ_T0015721.1 MGP_C3HHeJ_G0013825.1 mouse_genomes_project 7 131457394 131457566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085629.1 MGP_C3HHeJ_G0032586.1 mouse_genomes_project 7 119643120 119709997 + MGP_C3HHeJ_P0085629 protein_coding protein_coding MGP_C3HHeJ_T0085630.1 MGP_C3HHeJ_G0032586.1 mouse_genomes_project 7 119643434 119711323 + MGP_C3HHeJ_P0085630 protein_coding protein_coding MGP_C3HHeJ_T0085631.1 MGP_C3HHeJ_G0032586.1 mouse_genomes_project 7 119701276 119713289 + MGP_C3HHeJ_P0085631 protein_coding protein_coding MGP_C3HHeJ_T0085632.1 MGP_C3HHeJ_G0032586.1 mouse_genomes_project 7 119701311 119712845 + MGP_C3HHeJ_P0085632 protein_coding protein_coding MGP_C3HHeJ_T0085633.1 MGP_C3HHeJ_G0032586.1 mouse_genomes_project 7 119701316 119713286 + MGP_C3HHeJ_P0085633 protein_coding protein_coding MGP_C3HHeJ_T0085634.1 MGP_C3HHeJ_G0032586.1 mouse_genomes_project 7 119701341 119713289 + MGP_C3HHeJ_P0085634 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083854.1 MGP_C3HHeJ_G0032039.1 mouse_genomes_project 7 66159990 66175451 + Mtmr10 protein_coding retained_intron MGP_C3HHeJ_T0083855.1 MGP_C3HHeJ_G0032039.1 mouse_genomes_project 7 66160007 66217421 + MGP_C3HHeJ_P0083855 Mtmr10 protein_coding protein_coding MGP_C3HHeJ_T0083856.1 MGP_C3HHeJ_G0032039.1 mouse_genomes_project 7 66160119 66214644 + MGP_C3HHeJ_P0083856 Mtmr10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083857.1 MGP_C3HHeJ_G0032039.1 mouse_genomes_project 7 66172910 66197142 + MGP_C3HHeJ_P0083857 Mtmr10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083244.1 MGP_C3HHeJ_G0031881.1 mouse_genomes_project 7 45738799 45740070 + MGP_C3HHeJ_P0083244 protein_coding protein_coding MGP_C3HHeJ_T0084674.1 MGP_C3HHeJ_G0032232.1 mouse_genomes_project 7 100842659 100970368 + MGP_C3HHeJ_P0084674 Gdpd4 protein_coding protein_coding MGP_C3HHeJ_T0084675.1 MGP_C3HHeJ_G0032232.1 mouse_genomes_project 7 100882371 100969316 + MGP_C3HHeJ_P0084675 Gdpd4 protein_coding protein_coding MGP_C3HHeJ_T0081339.1 MGP_C3HHeJ_G0031391.1 mouse_genomes_project 7 13748457 13752983 - MGP_C3HHeJ_P0081339 Obox6 protein_coding protein_coding MGP_C3HHeJ_T0087444.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148354578 148400471 - MGP_C3HHeJ_P0087444 Cars protein_coding protein_coding MGP_C3HHeJ_T0087445.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148355055 148400437 - MGP_C3HHeJ_P0087445 Cars protein_coding protein_coding MGP_C3HHeJ_T0087446.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148361306 148368756 - Cars protein_coding processed_transcript MGP_C3HHeJ_T0087447.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148364152 148369522 - Cars protein_coding retained_intron MGP_C3HHeJ_T0087448.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148369332 148370599 - Cars protein_coding processed_transcript MGP_C3HHeJ_T0087449.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148370447 148375013 - Cars protein_coding retained_intron MGP_C3HHeJ_T0087450.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148386117 148397148 - Cars protein_coding processed_transcript MGP_C3HHeJ_T0087451.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148387518 148400062 - Cars protein_coding processed_transcript MGP_C3HHeJ_T0087452.1 MGP_C3HHeJ_G0032975.1 mouse_genomes_project 7 148392793 148400412 - Cars protein_coding processed_transcript MGP_C3HHeJ_T0086354.1 MGP_C3HHeJ_G0032727.1 mouse_genomes_project 7 131281324 131285075 - MGP_C3HHeJ_P0086354 Dctpp1 protein_coding protein_coding MGP_C3HHeJ_T0083587.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47850568 47871773 - MGP_C3HHeJ_P0083587 Tph1 protein_coding protein_coding MGP_C3HHeJ_T0083588.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47850599 47876927 - MGP_C3HHeJ_P0083588 Tph1 protein_coding protein_coding MGP_C3HHeJ_T0083589.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47850864 47869697 - MGP_C3HHeJ_P0083589 Tph1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083590.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47850864 47869684 - MGP_C3HHeJ_P0083590 Tph1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083591.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47852873 47855709 - Tph1 protein_coding retained_intron MGP_C3HHeJ_T0083592.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47861256 47865063 - Tph1 protein_coding retained_intron MGP_C3HHeJ_T0083593.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47864414 47866711 - Tph1 protein_coding retained_intron MGP_C3HHeJ_T0083594.1 MGP_C3HHeJ_G0031972.1 mouse_genomes_project 7 47864732 47871739 - MGP_C3HHeJ_P0083594 Tph1 protein_coding protein_coding MGP_C3HHeJ_T0085008.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105412333 105428553 + Pgap2 protein_coding processed_transcript MGP_C3HHeJ_T0085009.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105412460 105432195 + MGP_C3HHeJ_P0085009 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085010.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105412484 105444862 + MGP_C3HHeJ_P0085010 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085011.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105412494 105432255 + MGP_C3HHeJ_P0085011 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085012.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105412646 105424824 + Pgap2 protein_coding processed_transcript MGP_C3HHeJ_T0085013.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105412657 105442757 + Pgap2 protein_coding retained_intron MGP_C3HHeJ_T0085014.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105427523 105442463 + MGP_C3HHeJ_P0085014 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085015.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105427713 105443524 + MGP_C3HHeJ_P0085015 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085016.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428097 105444862 + MGP_C3HHeJ_P0085016 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085017.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428114 105443522 + MGP_C3HHeJ_P0085017 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085018.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428119 105444072 + MGP_C3HHeJ_P0085018 Pgap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085019.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428122 105442529 + MGP_C3HHeJ_P0085019 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085020.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428138 105444058 + MGP_C3HHeJ_P0085020 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085021.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428140 105432921 + Pgap2 protein_coding retained_intron MGP_C3HHeJ_T0085022.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428141 105443958 + Pgap2 protein_coding processed_transcript MGP_C3HHeJ_T0085023.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428144 105432164 + MGP_C3HHeJ_P0085023 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085024.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428147 105442714 + Pgap2 protein_coding retained_intron MGP_C3HHeJ_T0085025.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428153 105443916 + MGP_C3HHeJ_P0085025 Pgap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085026.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428154 105444029 + MGP_C3HHeJ_P0085026 Pgap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085027.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428162 105444855 + Pgap2 protein_coding processed_transcript MGP_C3HHeJ_T0085028.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105428351 105442594 + MGP_C3HHeJ_P0085028 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085029.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105431627 105442631 + MGP_C3HHeJ_P0085029 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085030.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105431640 105443848 + MGP_C3HHeJ_P0085030 Pgap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085031.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105436319 105444855 + MGP_C3HHeJ_P0085031 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085032.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105442149 105443826 + MGP_C3HHeJ_P0085032 Pgap2 protein_coding protein_coding MGP_C3HHeJ_T0085033.1 MGP_C3HHeJ_G0032306.1 mouse_genomes_project 7 105442198 105443950 + Pgap2 protein_coding retained_intron MGP_C3HHeJ_T0082053.1 MGP_C3HHeJ_G0031601.1 mouse_genomes_project 7 26171389 26187674 + MGP_C3HHeJ_P0082053 Cyp2f2 protein_coding protein_coding MGP_C3HHeJ_T0082054.1 MGP_C3HHeJ_G0031601.1 mouse_genomes_project 7 26171441 26177135 + Cyp2f2 protein_coding processed_transcript MGP_C3HHeJ_T0082055.1 MGP_C3HHeJ_G0031601.1 mouse_genomes_project 7 26173676 26185248 + MGP_C3HHeJ_P0082055 Cyp2f2 protein_coding protein_coding MGP_C3HHeJ_T0018178.1 MGP_C3HHeJ_G0015443.1 mouse_genomes_project 7 101109103 101111293 + Gm16938 processed_transcript processed_transcript MGP_C3HHeJ_T0018179.1 MGP_C3HHeJ_G0015443.1 mouse_genomes_project 7 101109150 101111293 + Gm16938 processed_transcript processed_transcript MGP_C3HHeJ_T0084920.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104822051 104882719 + Clpb protein_coding retained_intron MGP_C3HHeJ_T0084921.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104822051 104949821 + MGP_C3HHeJ_P0084921 Clpb protein_coding protein_coding MGP_C3HHeJ_T0084922.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104822123 104947459 + MGP_C3HHeJ_P0084922 Clpb protein_coding protein_coding MGP_C3HHeJ_T0084923.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104822175 104847481 + Clpb protein_coding retained_intron MGP_C3HHeJ_T0084924.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104822193 104865049 + MGP_C3HHeJ_P0084924 Clpb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084925.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104822194 104946544 + Clpb protein_coding retained_intron MGP_C3HHeJ_T0084926.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104840669 104923796 + MGP_C3HHeJ_P0084926 Clpb protein_coding protein_coding MGP_C3HHeJ_T0084927.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104841748 104911057 + MGP_C3HHeJ_P0084927 Clpb protein_coding protein_coding MGP_C3HHeJ_T0084928.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104923679 104929485 + Clpb protein_coding processed_transcript MGP_C3HHeJ_T0084929.1 MGP_C3HHeJ_G0032287.1 mouse_genomes_project 7 104923706 104945210 + Clpb protein_coding processed_transcript MGP_C3HHeJ_T0081887.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23805384 23871791 - MGP_C3HHeJ_P0081887 Grik5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081888.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23805384 23872036 - MGP_C3HHeJ_P0081888 Grik5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081889.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23805384 23871982 - MGP_C3HHeJ_P0081889 Grik5 protein_coding protein_coding MGP_C3HHeJ_T0081890.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23845848 23859106 - Grik5 protein_coding retained_intron MGP_C3HHeJ_T0081891.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23859786 23864868 - Grik5 protein_coding retained_intron MGP_C3HHeJ_T0081892.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23859971 23860669 - Grik5 protein_coding retained_intron MGP_C3HHeJ_T0081893.1 MGP_C3HHeJ_G0031557.1 mouse_genomes_project 7 23868238 23872000 - Grik5 protein_coding processed_transcript MGP_C3HHeJ_T0018193.1 MGP_C3HHeJ_G0015451.1 mouse_genomes_project 7 130890909 130896528 + Gm20650 processed_transcript processed_transcript MGP_C3HHeJ_T0005063.1 MGP_C3HHeJ_G0004313.1 mouse_genomes_project 7 305866 315815 - Gm44151 antisense antisense MGP_C3HHeJ_T0087297.1 MGP_C3HHeJ_G0032947.1 mouse_genomes_project 7 146945831 146946927 - MGP_C3HHeJ_P0087297 Krtap5-5 protein_coding protein_coding MGP_C3HHeJ_T0015702.1 MGP_C3HHeJ_G0013806.1 mouse_genomes_project 7 120114278 120114566 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102249.1 MGP_C3HHeJ_G0040212.1 mouse_genomes_project 7 49078582 49079402 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083122.1 MGP_C3HHeJ_G0031855.1 mouse_genomes_project 7 44992768 45248927 + MGP_C3HHeJ_P0083122 protein_coding protein_coding MGP_C3HHeJ_T0085088.1 MGP_C3HHeJ_G0032356.1 mouse_genomes_project 7 106709878 106710838 + MGP_C3HHeJ_P0085088 Olfr606 protein_coding protein_coding MGP_C3HHeJ_T0082075.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26247308 26250448 - Snrpa protein_coding retained_intron MGP_C3HHeJ_T0082076.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26248443 26257196 - MGP_C3HHeJ_P0082076 Snrpa protein_coding protein_coding MGP_C3HHeJ_T0082077.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26248443 26257681 - MGP_C3HHeJ_P0082077 Snrpa protein_coding protein_coding MGP_C3HHeJ_T0082078.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26248443 26257707 - MGP_C3HHeJ_P0082078 Snrpa protein_coding protein_coding MGP_C3HHeJ_T0082079.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26248760 26257196 - MGP_C3HHeJ_P0082079 Snrpa protein_coding protein_coding MGP_C3HHeJ_T0082080.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26253147 26257460 - MGP_C3HHeJ_P0082080 Snrpa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082081.1 MGP_C3HHeJ_G0031607.1 mouse_genomes_project 7 26255899 26257589 - Snrpa protein_coding retained_intron MGP_C3HHeJ_T0081971.1 MGP_C3HHeJ_G0031577.1 mouse_genomes_project 7 24519789 24521587 - MGP_C3HHeJ_P0081971 Bckdha protein_coding protein_coding MGP_C3HHeJ_T0081972.1 MGP_C3HHeJ_G0031577.1 mouse_genomes_project 7 24519789 24548579 - MGP_C3HHeJ_P0081972 Bckdha protein_coding protein_coding MGP_C3HHeJ_T0005140.1 MGP_C3HHeJ_G0004366.1 mouse_genomes_project 7 45552662 45555186 + Gm44646 antisense antisense MGP_C3HHeJ_T0085069.1 MGP_C3HHeJ_G0032338.1 mouse_genomes_project 7 106197860 106198799 - MGP_C3HHeJ_P0085069 Olfr577 protein_coding protein_coding MGP_C3HHeJ_T0018142.1 MGP_C3HHeJ_G0015431.1 mouse_genomes_project 7 57561756 57580063 + A230056P14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018143.1 MGP_C3HHeJ_G0015431.1 mouse_genomes_project 7 57561756 57572248 + A230056P14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0082572.1 MGP_C3HHeJ_G0031730.1 mouse_genomes_project 7 29948304 29952510 - MGP_C3HHeJ_P0082572 Lin37 protein_coding protein_coding MGP_C3HHeJ_T0082573.1 MGP_C3HHeJ_G0031730.1 mouse_genomes_project 7 29948307 29948885 - Lin37 protein_coding retained_intron MGP_C3HHeJ_T0082574.1 MGP_C3HHeJ_G0031730.1 mouse_genomes_project 7 29948308 29952702 - MGP_C3HHeJ_P0082574 Lin37 protein_coding protein_coding MGP_C3HHeJ_T0082575.1 MGP_C3HHeJ_G0031730.1 mouse_genomes_project 7 29948723 29952523 - MGP_C3HHeJ_P0082575 Lin37 protein_coding protein_coding MGP_C3HHeJ_T0082576.1 MGP_C3HHeJ_G0031730.1 mouse_genomes_project 7 29949956 29952503 - Lin37 protein_coding processed_transcript MGP_C3HHeJ_T0008936.1 MGP_C3HHeJ_G0007189.1 mouse_genomes_project 7 130734470 130736229 + 4930448A20Rik lincRNA lincRNA MGP_C3HHeJ_T0008975.1 MGP_C3HHeJ_G0007214.1 mouse_genomes_project 7 147359119 147361746 - H19 lincRNA lincRNA MGP_C3HHeJ_T0008976.1 MGP_C3HHeJ_G0007214.1 mouse_genomes_project 7 147359148 147361711 - H19 lincRNA lincRNA MGP_C3HHeJ_T0008977.1 MGP_C3HHeJ_G0007214.1 mouse_genomes_project 7 147359224 147360129 - H19 lincRNA lincRNA MGP_C3HHeJ_T0008978.1 MGP_C3HHeJ_G0007214.1 mouse_genomes_project 7 147359886 147360501 - H19 lincRNA lincRNA MGP_C3HHeJ_T0008979.1 MGP_C3HHeJ_G0007214.1 mouse_genomes_project 7 147360097 147361686 - H19 lincRNA lincRNA MGP_C3HHeJ_T0008865.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84031758 84037807 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008866.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84031771 84038399 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008867.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84031779 84039741 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008868.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84031779 84037691 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008869.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84031814 84037493 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008870.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84036651 84037764 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008871.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84037028 84037843 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0008872.1 MGP_C3HHeJ_G0007147.1 mouse_genomes_project 7 84037043 84039745 + 2900076A07Rik lincRNA lincRNA MGP_C3HHeJ_T0100859.1 MGP_C3HHeJ_G0039053.1 mouse_genomes_project 7 121826149 121826281 + Gm25683 snoRNA snoRNA MGP_C3HHeJ_T0085921.1 MGP_C3HHeJ_G0032655.1 mouse_genomes_project 7 126533225 126633784 + MGP_C3HHeJ_P0085921 Cacng3 protein_coding protein_coding MGP_C3HHeJ_T0085922.1 MGP_C3HHeJ_G0032655.1 mouse_genomes_project 7 126534124 126632812 + MGP_C3HHeJ_P0085922 Cacng3 protein_coding protein_coding MGP_C3HHeJ_T0085923.1 MGP_C3HHeJ_G0032655.1 mouse_genomes_project 7 126534151 126632931 + MGP_C3HHeJ_P0085923 Cacng3 protein_coding protein_coding MGP_C3HHeJ_T0018115.1 MGP_C3HHeJ_G0015423.1 mouse_genomes_project 7 43388834 43405922 - Gm44997 processed_transcript lincRNA MGP_C3HHeJ_T0102234.1 MGP_C3HHeJ_G0040197.1 mouse_genomes_project 7 45029317 45056546 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0081544.1 MGP_C3HHeJ_G0031458.1 mouse_genomes_project 7 17406032 17432689 + MGP_C3HHeJ_P0081544 Rsph6a protein_coding protein_coding MGP_C3HHeJ_T0081545.1 MGP_C3HHeJ_G0031458.1 mouse_genomes_project 7 17406041 17432689 + MGP_C3HHeJ_P0081545 Rsph6a protein_coding protein_coding MGP_C3HHeJ_T0081546.1 MGP_C3HHeJ_G0031458.1 mouse_genomes_project 7 17408785 17422100 + Rsph6a protein_coding processed_transcript MGP_C3HHeJ_T0015612.1 MGP_C3HHeJ_G0013716.1 mouse_genomes_project 7 54347667 54347912 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008925.1 MGP_C3HHeJ_G0007182.1 mouse_genomes_project 7 128531441 128633495 - 3100003L05Rik lincRNA lincRNA MGP_C3HHeJ_T0084365.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83849761 83958637 - MGP_C3HHeJ_P0084365 Cpeb1 protein_coding protein_coding MGP_C3HHeJ_T0084366.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83849763 83939390 - MGP_C3HHeJ_P0084366 Cpeb1 protein_coding protein_coding MGP_C3HHeJ_T0084367.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83849764 83958637 - MGP_C3HHeJ_P0084367 Cpeb1 protein_coding protein_coding MGP_C3HHeJ_T0084368.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83852056 83853246 - Cpeb1 protein_coding retained_intron MGP_C3HHeJ_T0084369.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83852337 83858731 - Cpeb1 protein_coding processed_transcript MGP_C3HHeJ_T0084370.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83865367 83877722 - Cpeb1 protein_coding retained_intron MGP_C3HHeJ_T0084371.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83865367 83959344 - Cpeb1 protein_coding processed_transcript MGP_C3HHeJ_T0084372.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83865531 83877766 - Cpeb1 protein_coding processed_transcript MGP_C3HHeJ_T0084373.1 MGP_C3HHeJ_G0032132.1 mouse_genomes_project 7 83939236 83959271 - Cpeb1 protein_coding processed_transcript MGP_C3HHeJ_T0005177.1 MGP_C3HHeJ_G0004393.1 mouse_genomes_project 7 95498274 95505570 - 4632427E13Rik antisense antisense MGP_C3HHeJ_T0005178.1 MGP_C3HHeJ_G0004393.1 mouse_genomes_project 7 95501745 95505579 - 4632427E13Rik antisense antisense MGP_C3HHeJ_T0005179.1 MGP_C3HHeJ_G0004393.1 mouse_genomes_project 7 95501766 95505579 - 4632427E13Rik antisense antisense MGP_C3HHeJ_T0005180.1 MGP_C3HHeJ_G0004393.1 mouse_genomes_project 7 95504812 95505570 - 4632427E13Rik antisense antisense MGP_C3HHeJ_T0083822.1 MGP_C3HHeJ_G0032035.1 mouse_genomes_project 7 65302003 65616455 + MGP_C3HHeJ_P0083822 Otud7a protein_coding protein_coding MGP_C3HHeJ_T0083823.1 MGP_C3HHeJ_G0032035.1 mouse_genomes_project 7 65302029 65482045 + Otud7a protein_coding processed_transcript MGP_C3HHeJ_T0083824.1 MGP_C3HHeJ_G0032035.1 mouse_genomes_project 7 65514775 65615416 + MGP_C3HHeJ_P0083824 Otud7a protein_coding protein_coding MGP_C3HHeJ_T0083825.1 MGP_C3HHeJ_G0032035.1 mouse_genomes_project 7 65612128 65615352 + MGP_C3HHeJ_P0083825 Otud7a protein_coding protein_coding MGP_C3HHeJ_T0085078.1 MGP_C3HHeJ_G0032347.1 mouse_genomes_project 7 106416059 106418800 + MGP_C3HHeJ_P0085078 Olfr592 protein_coding protein_coding MGP_C3HHeJ_T0085079.1 MGP_C3HHeJ_G0032347.1 mouse_genomes_project 7 106417861 106418800 + MGP_C3HHeJ_P0085079 Olfr592 protein_coding protein_coding MGP_C3HHeJ_T0008774.1 MGP_C3HHeJ_G0007080.1 mouse_genomes_project 7 40752843 40759865 + 4933404I11Rik lincRNA lincRNA MGP_C3HHeJ_T0082501.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29675435 29692246 + MGP_C3HHeJ_P0082501 Clip3 protein_coding protein_coding MGP_C3HHeJ_T0082502.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29675491 29676437 + Clip3 protein_coding retained_intron MGP_C3HHeJ_T0082503.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29675492 29680931 + MGP_C3HHeJ_P0082503 Clip3 protein_coding protein_coding MGP_C3HHeJ_T0082504.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29675502 29680687 + MGP_C3HHeJ_P0082504 Clip3 protein_coding protein_coding MGP_C3HHeJ_T0082505.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29675721 29680698 + MGP_C3HHeJ_P0082505 Clip3 protein_coding protein_coding MGP_C3HHeJ_T0082506.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29680880 29682919 + Clip3 protein_coding processed_transcript MGP_C3HHeJ_T0082507.1 MGP_C3HHeJ_G0031714.1 mouse_genomes_project 7 29687517 29691183 + Clip3 protein_coding processed_transcript MGP_C3HHeJ_T0086880.1 MGP_C3HHeJ_G0032838.1 mouse_genomes_project 7 142732717 142921612 - MGP_C3HHeJ_P0086880 Tcerg1l protein_coding protein_coding MGP_C3HHeJ_T0086881.1 MGP_C3HHeJ_G0032838.1 mouse_genomes_project 7 142733460 142789770 - Tcerg1l protein_coding processed_transcript MGP_C3HHeJ_T0086882.1 MGP_C3HHeJ_G0032838.1 mouse_genomes_project 7 142782208 142921614 - Tcerg1l protein_coding retained_intron MGP_C3HHeJ_T0083577.1 MGP_C3HHeJ_G0031970.1 mouse_genomes_project 7 47595591 47632398 + MGP_C3HHeJ_P0083577 Kcnc1 protein_coding protein_coding MGP_C3HHeJ_T0083578.1 MGP_C3HHeJ_G0031970.1 mouse_genomes_project 7 47596742 47637421 + MGP_C3HHeJ_P0083578 Kcnc1 protein_coding protein_coding MGP_C3HHeJ_T0083579.1 MGP_C3HHeJ_G0031970.1 mouse_genomes_project 7 47621750 47626879 + Kcnc1 protein_coding processed_transcript MGP_C3HHeJ_T0086960.1 MGP_C3HHeJ_G0032856.1 mouse_genomes_project 7 144629968 144634183 + MGP_C3HHeJ_P0086960 Zfp511 protein_coding protein_coding MGP_C3HHeJ_T0102176.1 MGP_C3HHeJ_G0040140.1 mouse_genomes_project 7 12287171 12287871 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085135.1 MGP_C3HHeJ_G0032401.1 mouse_genomes_project 7 107445282 107455892 - MGP_C3HHeJ_P0085135 Olfm5 protein_coding protein_coding MGP_C3HHeJ_T0085136.1 MGP_C3HHeJ_G0032401.1 mouse_genomes_project 7 107446386 107455873 - MGP_C3HHeJ_P0085136 Olfm5 protein_coding protein_coding MGP_C3HHeJ_T0015738.1 MGP_C3HHeJ_G0013842.1 mouse_genomes_project 7 148396834 148397390 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086302.1 MGP_C3HHeJ_G0032716.1 mouse_genomes_project 7 131033850 131035079 - MGP_C3HHeJ_P0086302 Kif22 protein_coding protein_coding MGP_C3HHeJ_T0086303.1 MGP_C3HHeJ_G0032716.1 mouse_genomes_project 7 131033852 131048071 - MGP_C3HHeJ_P0086303 Kif22 protein_coding protein_coding MGP_C3HHeJ_T0086304.1 MGP_C3HHeJ_G0032716.1 mouse_genomes_project 7 131033853 131034238 - Kif22 protein_coding retained_intron MGP_C3HHeJ_T0086305.1 MGP_C3HHeJ_G0032716.1 mouse_genomes_project 7 131035225 131038826 - Kif22 protein_coding retained_intron MGP_C3HHeJ_T0086306.1 MGP_C3HHeJ_G0032716.1 mouse_genomes_project 7 131038349 131048009 - Kif22 protein_coding retained_intron MGP_C3HHeJ_T0086307.1 MGP_C3HHeJ_G0032716.1 mouse_genomes_project 7 131039706 131048006 - MGP_C3HHeJ_P0086307 Kif22 protein_coding protein_coding MGP_C3HHeJ_T0081643.1 MGP_C3HHeJ_G0031482.1 mouse_genomes_project 7 17846467 17877468 + MGP_C3HHeJ_P0081643 Exoc3l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0081644.1 MGP_C3HHeJ_G0031482.1 mouse_genomes_project 7 17869380 17878977 + MGP_C3HHeJ_P0081644 Exoc3l2 protein_coding protein_coding MGP_C3HHeJ_T0082213.1 MGP_C3HHeJ_G0031641.1 mouse_genomes_project 7 27438930 27440322 + MGP_C3HHeJ_P0082213 Eid2 protein_coding protein_coding MGP_C3HHeJ_T0084500.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89918499 89976895 + MGP_C3HHeJ_P0084500 Nox4 protein_coding protein_coding MGP_C3HHeJ_T0084501.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919052 89980240 + Nox4 protein_coding retained_intron MGP_C3HHeJ_T0084502.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919052 89959899 + Nox4 protein_coding processed_transcript MGP_C3HHeJ_T0084503.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919052 90064170 + MGP_C3HHeJ_P0084503 Nox4 protein_coding protein_coding MGP_C3HHeJ_T0084504.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919052 90067018 + MGP_C3HHeJ_P0084504 Nox4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084505.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919052 90060662 + MGP_C3HHeJ_P0084505 Nox4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084506.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919052 90067018 + MGP_C3HHeJ_P0084506 Nox4 protein_coding protein_coding MGP_C3HHeJ_T0084507.1 MGP_C3HHeJ_G0032189.1 mouse_genomes_project 7 89919215 90066647 + MGP_C3HHeJ_P0084507 Nox4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0008814.1 MGP_C3HHeJ_G0007109.1 mouse_genomes_project 7 70348167 70362715 - Gm16158 lincRNA lincRNA MGP_C3HHeJ_T0008815.1 MGP_C3HHeJ_G0007109.1 mouse_genomes_project 7 70348167 70362696 - Gm16158 lincRNA lincRNA MGP_C3HHeJ_T0010784.1 MGP_C3HHeJ_G0008917.1 mouse_genomes_project 7 55590595 55590703 - Gm27921 miRNA miRNA MGP_C3HHeJ_T0085042.1 MGP_C3HHeJ_G0032314.1 mouse_genomes_project 7 105775084 105776035 + MGP_C3HHeJ_P0085042 Olfr549 protein_coding protein_coding MGP_C3HHeJ_T0083601.1 MGP_C3HHeJ_G0031974.1 mouse_genomes_project 7 47917969 47921648 - MGP_C3HHeJ_P0083601 Saa3 protein_coding protein_coding MGP_C3HHeJ_T0018116.1 MGP_C3HHeJ_G0015424.1 mouse_genomes_project 7 44709369 44819996 - 2310002F09Rik processed_transcript antisense MGP_C3HHeJ_T0018117.1 MGP_C3HHeJ_G0015424.1 mouse_genomes_project 7 44761239 44764567 - 2310002F09Rik processed_transcript antisense MGP_C3HHeJ_T0018118.1 MGP_C3HHeJ_G0015424.1 mouse_genomes_project 7 44774323 44774928 - 2310002F09Rik processed_transcript TEC MGP_C3HHeJ_T0018119.1 MGP_C3HHeJ_G0015424.1 mouse_genomes_project 7 44818874 44820009 - 2310002F09Rik processed_transcript antisense MGP_C3HHeJ_T0084757.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102514740 102591854 + MGP_C3HHeJ_P0084757 Arrb1 protein_coding protein_coding MGP_C3HHeJ_T0084758.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102514740 102591854 + MGP_C3HHeJ_P0084758 Arrb1 protein_coding protein_coding MGP_C3HHeJ_T0084759.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102514936 102588643 + MGP_C3HHeJ_P0084759 Arrb1 protein_coding protein_coding MGP_C3HHeJ_T0084760.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102514978 102574130 + MGP_C3HHeJ_P0084760 Arrb1 protein_coding protein_coding MGP_C3HHeJ_T0084761.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102518953 102573325 + MGP_C3HHeJ_P0084761 Arrb1 protein_coding protein_coding MGP_C3HHeJ_T0084762.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102554737 102573317 + Arrb1 protein_coding processed_transcript MGP_C3HHeJ_T0084763.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102579756 102586211 + Arrb1 protein_coding retained_intron MGP_C3HHeJ_T0084764.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102579777 102586225 + Arrb1 protein_coding retained_intron MGP_C3HHeJ_T0084765.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102579784 102584864 + Arrb1 protein_coding retained_intron MGP_C3HHeJ_T0084766.1 MGP_C3HHeJ_G0032252.1 mouse_genomes_project 7 102579786 102585144 + MGP_C3HHeJ_P0084766 Arrb1 protein_coding protein_coding MGP_C3HHeJ_T0097923.1 MGP_C3HHeJ_G0036135.1 mouse_genomes_project 7 95851647 95853479 + pseudogene pseudogene MGP_C3HHeJ_T0080809.1 MGP_C3HHeJ_G0031219.1 mouse_genomes_project 7 190306 206444 + Prkcg protein_coding processed_transcript MGP_C3HHeJ_T0080814.1 MGP_C3HHeJ_G0031219.1 mouse_genomes_project 7 205654 234073 + MGP_C3HHeJ_P0080814 Prkcg protein_coding protein_coding MGP_C3HHeJ_T0080815.1 MGP_C3HHeJ_G0031219.1 mouse_genomes_project 7 205777 233347 + MGP_C3HHeJ_P0080815 Prkcg protein_coding protein_coding MGP_C3HHeJ_T0080816.1 MGP_C3HHeJ_G0031219.1 mouse_genomes_project 7 207446 220856 + MGP_C3HHeJ_P0080816 Prkcg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0080817.1 MGP_C3HHeJ_G0031219.1 mouse_genomes_project 7 231817 233000 + Prkcg protein_coding retained_intron MGP_C3HHeJ_T0099606.1 MGP_C3HHeJ_G0037800.1 mouse_genomes_project 7 123723751 123723852 + Gm25217 snRNA snRNA MGP_C3HHeJ_T0008850.1 MGP_C3HHeJ_G0007139.1 mouse_genomes_project 7 81194545 81194822 + 1700011D18Rik lincRNA lincRNA MGP_C3HHeJ_T0015500.1 MGP_C3HHeJ_G0013604.1 mouse_genomes_project 7 3000437 3001386 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082024.1 MGP_C3HHeJ_G0031589.1 mouse_genomes_project 7 25227245 25228298 + MGP_C3HHeJ_P0082024 Vmn1r184 protein_coding protein_coding MGP_C3HHeJ_T0008723.1 MGP_C3HHeJ_G0007038.1 mouse_genomes_project 7 14877043 14880577 - 9330104G04Rik lincRNA lincRNA MGP_C3HHeJ_T0008724.1 MGP_C3HHeJ_G0007038.1 mouse_genomes_project 7 14878644 14880577 - 9330104G04Rik lincRNA lincRNA MGP_C3HHeJ_T0081414.1 MGP_C3HHeJ_G0031414.1 mouse_genomes_project 7 14654448 14656773 - MGP_C3HHeJ_P0081414 Ceacam15 protein_coding protein_coding MGP_C3HHeJ_T0087380.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468530 147469560 - MGP_C3HHeJ_P0087380 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087381.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468530 147489385 - MGP_C3HHeJ_P0087381 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087382.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468533 147469601 - MGP_C3HHeJ_P0087382 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087383.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468533 147469573 - MGP_C3HHeJ_P0087383 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087384.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468533 147469567 - MGP_C3HHeJ_P0087384 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087385.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468535 147469592 - MGP_C3HHeJ_P0087385 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087386.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468583 147469455 - MGP_C3HHeJ_P0087386 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0087387.1 MGP_C3HHeJ_G0032961.1 mouse_genomes_project 7 147468587 147469408 - MGP_C3HHeJ_P0087387 Ins2 protein_coding protein_coding MGP_C3HHeJ_T0101265.1 MGP_C3HHeJ_G0039377.1 mouse_genomes_project 7 39920820 39921165 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101266.1 MGP_C3HHeJ_G0039377.1 mouse_genomes_project 7 39921099 39924416 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0015693.1 MGP_C3HHeJ_G0013797.1 mouse_genomes_project 7 109592986 109594024 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005083.1 MGP_C3HHeJ_G0004324.1 mouse_genomes_project 7 17341485 17349408 - Mypopos antisense antisense MGP_C3HHeJ_T0005084.1 MGP_C3HHeJ_G0004324.1 mouse_genomes_project 7 17341804 17349435 - Mypopos antisense antisense MGP_C3HHeJ_T0005085.1 MGP_C3HHeJ_G0004324.1 mouse_genomes_project 7 17343068 17345536 - Mypopos antisense antisense MGP_C3HHeJ_T0005086.1 MGP_C3HHeJ_G0004324.1 mouse_genomes_project 7 17345545 17349419 - Mypopos antisense antisense MGP_C3HHeJ_T0010809.1 MGP_C3HHeJ_G0008942.1 mouse_genomes_project 7 68309760 68309818 - Mir7057 miRNA miRNA MGP_C3HHeJ_T0081179.1 MGP_C3HHeJ_G0031322.1 mouse_genomes_project 7 4404499 4425986 - MGP_C3HHeJ_P0081179 Clcn4 protein_coding protein_coding MGP_C3HHeJ_T0086181.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130783058 130789689 - MGP_C3HHeJ_P0086181 Ppp4c protein_coding protein_coding MGP_C3HHeJ_T0086182.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130783060 130789533 - MGP_C3HHeJ_P0086182 Ppp4c protein_coding protein_coding MGP_C3HHeJ_T0086183.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130783351 130785603 - MGP_C3HHeJ_P0086183 Ppp4c protein_coding protein_coding MGP_C3HHeJ_T0086184.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130783421 130784532 - MGP_C3HHeJ_P0086184 Ppp4c protein_coding protein_coding MGP_C3HHeJ_T0086185.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130783481 130789686 - MGP_C3HHeJ_P0086185 Ppp4c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086186.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130784412 130786237 - MGP_C3HHeJ_P0086186 Ppp4c protein_coding protein_coding MGP_C3HHeJ_T0086187.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130784660 130789340 - MGP_C3HHeJ_P0086187 Ppp4c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086188.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130784763 130786210 - Ppp4c protein_coding retained_intron MGP_C3HHeJ_T0086189.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130784856 130789659 - Ppp4c protein_coding retained_intron MGP_C3HHeJ_T0086190.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130787705 130789689 - Ppp4c protein_coding retained_intron MGP_C3HHeJ_T0086191.1 MGP_C3HHeJ_G0032697.1 mouse_genomes_project 7 130787729 130789675 - Ppp4c protein_coding retained_intron MGP_C3HHeJ_T0083567.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391012 47435917 - MGP_C3HHeJ_P0083567 Ush1c protein_coding protein_coding MGP_C3HHeJ_T0083568.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391019 47435928 - MGP_C3HHeJ_P0083568 Ush1c protein_coding protein_coding MGP_C3HHeJ_T0083569.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391019 47435915 - MGP_C3HHeJ_P0083569 Ush1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083570.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391293 47435889 - MGP_C3HHeJ_P0083570 Ush1c protein_coding protein_coding MGP_C3HHeJ_T0083571.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391312 47435923 - MGP_C3HHeJ_P0083571 Ush1c protein_coding protein_coding MGP_C3HHeJ_T0083572.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391313 47427732 - MGP_C3HHeJ_P0083572 Ush1c protein_coding protein_coding MGP_C3HHeJ_T0083573.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47391332 47397416 - Ush1c protein_coding retained_intron MGP_C3HHeJ_T0083574.1 MGP_C3HHeJ_G0031967.1 mouse_genomes_project 7 47396686 47417165 - Ush1c protein_coding processed_transcript MGP_C3HHeJ_T0015576.1 MGP_C3HHeJ_G0013680.1 mouse_genomes_project 7 34611337 34611982 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099589.1 MGP_C3HHeJ_G0037783.1 mouse_genomes_project 7 90759960 90760024 - Gm24249 snRNA snRNA MGP_C3HHeJ_T0011599.1 MGP_C3HHeJ_G0009732.1 mouse_genomes_project 7 118533288 118533606 + Gm22669 misc_RNA misc_RNA MGP_C3HHeJ_T0084774.1 MGP_C3HHeJ_G0032255.1 mouse_genomes_project 7 102734988 102736181 + MGP_C3HHeJ_P0084774 Olfr520 protein_coding protein_coding MGP_C3HHeJ_T0084863.1 MGP_C3HHeJ_G0032278.1 mouse_genomes_project 7 103963577 104024005 - MGP_C3HHeJ_P0084863 Arhgef17 protein_coding protein_coding MGP_C3HHeJ_T0084864.1 MGP_C3HHeJ_G0032278.1 mouse_genomes_project 7 103963607 103988645 - MGP_C3HHeJ_P0084864 Arhgef17 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002182.1 MGP_C3HHeJ_G0002103.1 mouse_genomes_project 7 41318424 41318917 - TEC TEC MGP_C3HHeJ_T0082921.1 MGP_C3HHeJ_G0031796.1 mouse_genomes_project 7 35758639 35765229 - MGP_C3HHeJ_P0082921 Rgs9bp protein_coding protein_coding MGP_C3HHeJ_T0008924.1 MGP_C3HHeJ_G0007181.1 mouse_genomes_project 7 128397200 128414955 - Gm15339 lincRNA lincRNA MGP_C3HHeJ_T0081113.1 MGP_C3HHeJ_G0031289.1 mouse_genomes_project 7 2147180 2148193 - MGP_C3HHeJ_P0081113 Rasl2-9 protein_coding protein_coding MGP_C3HHeJ_T0081831.1 MGP_C3HHeJ_G0031544.1 mouse_genomes_project 7 23392487 23396531 - MGP_C3HHeJ_P0081831 Tex101 protein_coding protein_coding MGP_C3HHeJ_T0084043.1 MGP_C3HHeJ_G0032077.1 mouse_genomes_project 7 77334100 77416599 - MGP_C3HHeJ_P0084043 protein_coding unknown_likely_coding MGP_C3HHeJ_T0084044.1 MGP_C3HHeJ_G0032077.1 mouse_genomes_project 7 77339157 77365973 - MGP_C3HHeJ_P0084044 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084045.1 MGP_C3HHeJ_G0032077.1 mouse_genomes_project 7 77374851 77379514 - protein_coding processed_transcript MGP_C3HHeJ_T0084046.1 MGP_C3HHeJ_G0032077.1 mouse_genomes_project 7 77374851 77379503 - protein_coding processed_transcript MGP_C3HHeJ_T0084047.1 MGP_C3HHeJ_G0032077.1 mouse_genomes_project 7 77412170 77517829 - protein_coding retained_intron MGP_C3HHeJ_T0082643.1 MGP_C3HHeJ_G0031742.1 mouse_genomes_project 7 30095813 30096411 + MGP_C3HHeJ_P0082643 2200002J24Rik protein_coding protein_coding MGP_C3HHeJ_T0085860.1 MGP_C3HHeJ_G0032641.1 mouse_genomes_project 7 125461801 125529609 - MGP_C3HHeJ_P0085860 Usp31 protein_coding protein_coding MGP_C3HHeJ_T0085861.1 MGP_C3HHeJ_G0032641.1 mouse_genomes_project 7 125478562 125487267 - Usp31 protein_coding retained_intron MGP_C3HHeJ_T0002271.1 MGP_C3HHeJ_G0002191.1 mouse_genomes_project 7 131299140 131301192 + TEC TEC MGP_C3HHeJ_T0084005.1 MGP_C3HHeJ_G0032071.1 mouse_genomes_project 7 74212845 74465643 - MGP_C3HHeJ_P0084005 Mctp2 protein_coding protein_coding MGP_C3HHeJ_T0084006.1 MGP_C3HHeJ_G0032071.1 mouse_genomes_project 7 74215428 74246462 - MGP_C3HHeJ_P0084006 Mctp2 protein_coding protein_coding MGP_C3HHeJ_T0084007.1 MGP_C3HHeJ_G0032071.1 mouse_genomes_project 7 74257695 74304268 - MGP_C3HHeJ_P0084007 Mctp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084008.1 MGP_C3HHeJ_G0032071.1 mouse_genomes_project 7 74369515 74373540 - Mctp2 protein_coding retained_intron MGP_C3HHeJ_T0084009.1 MGP_C3HHeJ_G0032071.1 mouse_genomes_project 7 74411299 74465643 - Mctp2 protein_coding retained_intron MGP_C3HHeJ_T0086752.1 MGP_C3HHeJ_G0032805.1 mouse_genomes_project 7 135833383 135845800 + MGP_C3HHeJ_P0086752 Bub3 protein_coding protein_coding MGP_C3HHeJ_T0018122.1 MGP_C3HHeJ_G0015426.1 mouse_genomes_project 7 45297323 45297768 + processed_transcript lincRNA MGP_C3HHeJ_T0018123.1 MGP_C3HHeJ_G0015426.1 mouse_genomes_project 7 45297406 45297765 + processed_transcript retained_intron MGP_C3HHeJ_T0018124.1 MGP_C3HHeJ_G0015426.1 mouse_genomes_project 7 45297437 45297766 + processed_transcript retained_intron MGP_C3HHeJ_T0005110.1 MGP_C3HHeJ_G0004344.1 mouse_genomes_project 7 29842778 29846206 - Nphs1os antisense antisense MGP_C3HHeJ_T0084797.1 MGP_C3HHeJ_G0032265.1 mouse_genomes_project 7 103264669 103316175 + MGP_C3HHeJ_P0084797 Pgm2l1 protein_coding protein_coding MGP_C3HHeJ_T0084798.1 MGP_C3HHeJ_G0032265.1 mouse_genomes_project 7 103264963 103318310 + MGP_C3HHeJ_P0084798 Pgm2l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084799.1 MGP_C3HHeJ_G0032265.1 mouse_genomes_project 7 103264985 103319771 + MGP_C3HHeJ_P0084799 Pgm2l1 protein_coding protein_coding MGP_C3HHeJ_T0015602.1 MGP_C3HHeJ_G0013706.1 mouse_genomes_project 7 44892501 44892806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011600.1 MGP_C3HHeJ_G0009733.1 mouse_genomes_project 7 126310965 126311234 + Gm26414 misc_RNA misc_RNA MGP_C3HHeJ_T0102198.1 MGP_C3HHeJ_G0040162.1 mouse_genomes_project 7 16023644 16076432 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015492.1 MGP_C3HHeJ_G0013596.1 mouse_genomes_project 7 1370458 1370921 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102169.1 MGP_C3HHeJ_G0040133.1 mouse_genomes_project 7 10894521 10894722 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015525.1 MGP_C3HHeJ_G0013629.1 mouse_genomes_project 7 15154718 15155318 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0081961.1 MGP_C3HHeJ_G0031575.1 mouse_genomes_project 7 24509257 24515395 + MGP_C3HHeJ_P0081961 Atp5sl protein_coding protein_coding MGP_C3HHeJ_T0081962.1 MGP_C3HHeJ_G0031575.1 mouse_genomes_project 7 24509267 24510383 + Atp5sl protein_coding retained_intron MGP_C3HHeJ_T0081963.1 MGP_C3HHeJ_G0031575.1 mouse_genomes_project 7 24509336 24515392 + MGP_C3HHeJ_P0081963 Atp5sl protein_coding protein_coding MGP_C3HHeJ_T0081964.1 MGP_C3HHeJ_G0031575.1 mouse_genomes_project 7 24510380 24512250 + Atp5sl protein_coding retained_intron MGP_C3HHeJ_T0081965.1 MGP_C3HHeJ_G0031575.1 mouse_genomes_project 7 24510739 24513926 + MGP_C3HHeJ_P0081965 Atp5sl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081966.1 MGP_C3HHeJ_G0031575.1 mouse_genomes_project 7 24510746 24511847 + Atp5sl protein_coding processed_transcript MGP_C3HHeJ_T0100830.1 MGP_C3HHeJ_G0039024.1 mouse_genomes_project 7 60920811 60920899 - Gm22496 snoRNA snoRNA MGP_C3HHeJ_T0086921.1 MGP_C3HHeJ_G0032847.1 mouse_genomes_project 7 143937998 144142376 + MGP_C3HHeJ_P0086921 Inpp5a protein_coding protein_coding MGP_C3HHeJ_T0086922.1 MGP_C3HHeJ_G0032847.1 mouse_genomes_project 7 143937999 144142376 + MGP_C3HHeJ_P0086922 Inpp5a protein_coding protein_coding MGP_C3HHeJ_T0086923.1 MGP_C3HHeJ_G0032847.1 mouse_genomes_project 7 143949365 144141949 + MGP_C3HHeJ_P0086923 Inpp5a protein_coding protein_coding MGP_C3HHeJ_T0086924.1 MGP_C3HHeJ_G0032847.1 mouse_genomes_project 7 144003994 144062794 + Inpp5a protein_coding processed_transcript MGP_C3HHeJ_T0086925.1 MGP_C3HHeJ_G0032847.1 mouse_genomes_project 7 144031198 144048772 + Inpp5a protein_coding processed_transcript MGP_C3HHeJ_T0086926.1 MGP_C3HHeJ_G0032847.1 mouse_genomes_project 7 144075336 144137933 + Inpp5a protein_coding processed_transcript MGP_C3HHeJ_T0008970.1 MGP_C3HHeJ_G0007211.1 mouse_genomes_project 7 139631880 139636021 - 1700120G07Rik lincRNA lincRNA MGP_C3HHeJ_T0008971.1 MGP_C3HHeJ_G0007211.1 mouse_genomes_project 7 139633017 139636021 - 1700120G07Rik lincRNA lincRNA MGP_C3HHeJ_T0005103.1 MGP_C3HHeJ_G0004338.1 mouse_genomes_project 7 26316640 26325319 - Gm15567 antisense antisense MGP_C3HHeJ_T0087009.1 MGP_C3HHeJ_G0032877.1 mouse_genomes_project 7 145097947 145098938 + MGP_C3HHeJ_P0087009 Olfr535 protein_coding protein_coding MGP_C3HHeJ_T0102146.1 MGP_C3HHeJ_G0040110.1 mouse_genomes_project 7 7457146 7473831 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002258.1 MGP_C3HHeJ_G0002178.1 mouse_genomes_project 7 126172125 126177564 + TEC TEC MGP_C3HHeJ_T0084535.1 MGP_C3HHeJ_G0032199.1 mouse_genomes_project 7 92532620 92573087 - MGP_C3HHeJ_P0084535 Ccdc81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084536.1 MGP_C3HHeJ_G0032199.1 mouse_genomes_project 7 92532861 92573076 - MGP_C3HHeJ_P0084536 Ccdc81 protein_coding protein_coding MGP_C3HHeJ_T0084632.1 MGP_C3HHeJ_G0032225.1 mouse_genomes_project 7 100341804 100346969 + MGP_C3HHeJ_P0084632 protein_coding protein_coding MGP_C3HHeJ_T0084228.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82724006 82754264 - Rccd1 protein_coding retained_intron MGP_C3HHeJ_T0084244.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82748731 82758804 - MGP_C3HHeJ_P0084244 Rccd1 protein_coding protein_coding MGP_C3HHeJ_T0084245.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82750859 82758505 - Rccd1 protein_coding retained_intron MGP_C3HHeJ_T0084246.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82750859 82758824 - MGP_C3HHeJ_P0084246 Rccd1 protein_coding protein_coding MGP_C3HHeJ_T0084247.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82750906 82758834 - Rccd1 protein_coding retained_intron MGP_C3HHeJ_T0084248.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82750908 82753370 - Rccd1 protein_coding retained_intron MGP_C3HHeJ_T0084249.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82755081 82758500 - MGP_C3HHeJ_P0084249 Rccd1 protein_coding protein_coding MGP_C3HHeJ_T0084250.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82755393 82758533 - Rccd1 protein_coding retained_intron MGP_C3HHeJ_T0084251.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82756788 82758514 - Rccd1 protein_coding retained_intron MGP_C3HHeJ_T0084252.1 MGP_C3HHeJ_G0032113.1 mouse_genomes_project 7 82758149 82758781 - Rccd1 protein_coding processed_transcript MGP_C3HHeJ_T0085501.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114502667 114531196 + MGP_C3HHeJ_P0085501 Ctr9 protein_coding protein_coding MGP_C3HHeJ_T0085502.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114502711 114521360 + Ctr9 protein_coding retained_intron MGP_C3HHeJ_T0085503.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114502729 114504526 + Ctr9 protein_coding retained_intron MGP_C3HHeJ_T0085504.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114502853 114531202 + MGP_C3HHeJ_P0085504 Ctr9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085505.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114503931 114507773 + Ctr9 protein_coding processed_transcript MGP_C3HHeJ_T0085506.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114507752 114509099 + Ctr9 protein_coding retained_intron MGP_C3HHeJ_T0085507.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114520018 114520531 + Ctr9 protein_coding retained_intron MGP_C3HHeJ_T0085508.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114520018 114521698 + Ctr9 protein_coding retained_intron MGP_C3HHeJ_T0085509.1 MGP_C3HHeJ_G0032561.1 mouse_genomes_project 7 114524705 114527189 + Ctr9 protein_coding processed_transcript MGP_C3HHeJ_T0082138.1 MGP_C3HHeJ_G0031620.1 mouse_genomes_project 7 26582511 26607040 + MGP_C3HHeJ_P0082138 Prx protein_coding protein_coding MGP_C3HHeJ_T0082139.1 MGP_C3HHeJ_G0031620.1 mouse_genomes_project 7 26582511 26607040 + MGP_C3HHeJ_P0082139 Prx protein_coding protein_coding MGP_C3HHeJ_T0082140.1 MGP_C3HHeJ_G0031620.1 mouse_genomes_project 7 26592206 26606860 + MGP_C3HHeJ_P0082140 Prx protein_coding protein_coding MGP_C3HHeJ_T0082141.1 MGP_C3HHeJ_G0031620.1 mouse_genomes_project 7 26592211 26606867 + MGP_C3HHeJ_P0082141 Prx protein_coding protein_coding MGP_C3HHeJ_T0081290.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10924681 10958636 + Lig1 protein_coding processed_transcript MGP_C3HHeJ_T0081291.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10924711 10958636 + MGP_C3HHeJ_P0081291 Lig1 protein_coding protein_coding MGP_C3HHeJ_T0081292.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10926223 10958636 + MGP_C3HHeJ_P0081292 Lig1 protein_coding protein_coding MGP_C3HHeJ_T0081293.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10926232 10938912 + MGP_C3HHeJ_P0081293 Lig1 protein_coding protein_coding MGP_C3HHeJ_T0081294.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10926252 10939891 + MGP_C3HHeJ_P0081294 Lig1 protein_coding protein_coding MGP_C3HHeJ_T0081295.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10926262 10958637 + Lig1 protein_coding processed_transcript MGP_C3HHeJ_T0081296.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10926662 10958644 + Lig1 protein_coding processed_transcript MGP_C3HHeJ_T0081297.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10926662 10958636 + MGP_C3HHeJ_P0081297 Lig1 protein_coding protein_coding MGP_C3HHeJ_T0081298.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10927537 10958644 + Lig1 protein_coding processed_transcript MGP_C3HHeJ_T0081299.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10927537 10938639 + MGP_C3HHeJ_P0081299 Lig1 protein_coding protein_coding MGP_C3HHeJ_T0081300.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10950200 10953386 + Lig1 protein_coding retained_intron MGP_C3HHeJ_T0081301.1 MGP_C3HHeJ_G0031371.1 mouse_genomes_project 7 10954560 10958576 + Lig1 protein_coding retained_intron MGP_C3HHeJ_T0018159.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75721283 75740453 - 1810026B05Rik processed_transcript lincRNA MGP_C3HHeJ_T0018160.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75726114 75740302 - 1810026B05Rik processed_transcript lincRNA MGP_C3HHeJ_T0018161.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75726115 75740205 - 1810026B05Rik processed_transcript lincRNA MGP_C3HHeJ_T0018162.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75726120 75728937 - 1810026B05Rik processed_transcript retained_intron MGP_C3HHeJ_T0018163.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75726321 75737978 - 1810026B05Rik processed_transcript lincRNA MGP_C3HHeJ_T0018164.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75726342 75740031 - 1810026B05Rik processed_transcript lincRNA MGP_C3HHeJ_T0018165.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75726384 75740306 - 1810026B05Rik processed_transcript lincRNA MGP_C3HHeJ_T0018166.1 MGP_C3HHeJ_G0015437.1 mouse_genomes_project 7 75737204 75740444 - 1810026B05Rik processed_transcript retained_intron MGP_C3HHeJ_T0085944.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127108969 127163676 + MGP_C3HHeJ_P0085944 protein_coding protein_coding MGP_C3HHeJ_T0085945.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127109000 127125226 + protein_coding processed_transcript MGP_C3HHeJ_T0085946.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127125125 127135650 + MGP_C3HHeJ_P0085946 protein_coding protein_coding MGP_C3HHeJ_T0085947.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127125125 127144244 + MGP_C3HHeJ_P0085947 protein_coding protein_coding MGP_C3HHeJ_T0085948.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127131843 127171979 + MGP_C3HHeJ_P0085948 protein_coding unknown_likely_coding MGP_C3HHeJ_T0085949.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127136546 127148099 + MGP_C3HHeJ_P0085949 protein_coding protein_coding MGP_C3HHeJ_T0085950.1 MGP_C3HHeJ_G0032658.1 mouse_genomes_project 7 127163184 127165797 + protein_coding processed_transcript MGP_C3HHeJ_T0102300.1 MGP_C3HHeJ_G0040263.1 mouse_genomes_project 7 106469766 106470693 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011603.1 MGP_C3HHeJ_G0009736.1 mouse_genomes_project 7 140999422 140999730 - Gm24444 misc_RNA misc_RNA MGP_C3HHeJ_T0085327.1 MGP_C3HHeJ_G0032475.1 mouse_genomes_project 7 110210577 110211528 - MGP_C3HHeJ_P0085327 protein_coding protein_coding MGP_C3HHeJ_T0018181.1 MGP_C3HHeJ_G0015445.1 mouse_genomes_project 7 112869836 112876106 + 1700095J03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100840.1 MGP_C3HHeJ_G0039034.1 mouse_genomes_project 7 85543965 85544097 + Gm22934 snoRNA snoRNA MGP_C3HHeJ_T0085037.1 MGP_C3HHeJ_G0032309.1 mouse_genomes_project 7 105656892 105685091 + MGP_C3HHeJ_P0085037 Rrm1 protein_coding protein_coding MGP_C3HHeJ_T0083528.1 MGP_C3HHeJ_G0031956.1 mouse_genomes_project 7 46978807 46984374 - MGP_C3HHeJ_P0083528 Grwd1 protein_coding protein_coding MGP_C3HHeJ_T0083529.1 MGP_C3HHeJ_G0031956.1 mouse_genomes_project 7 46978810 46984361 - MGP_C3HHeJ_P0083529 Grwd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083530.1 MGP_C3HHeJ_G0031956.1 mouse_genomes_project 7 46978812 46984529 - MGP_C3HHeJ_P0083530 Grwd1 protein_coding protein_coding MGP_C3HHeJ_T0083531.1 MGP_C3HHeJ_G0031956.1 mouse_genomes_project 7 46979643 46984466 - MGP_C3HHeJ_P0083531 Grwd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085121.1 MGP_C3HHeJ_G0032387.1 mouse_genomes_project 7 107267167 107268054 + MGP_C3HHeJ_P0085121 protein_coding protein_coding MGP_C3HHeJ_T0081207.1 MGP_C3HHeJ_G0031345.1 mouse_genomes_project 7 9916195 9917152 - MGP_C3HHeJ_P0081207 Vmn1r84 protein_coding protein_coding MGP_C3HHeJ_T0085387.1 MGP_C3HHeJ_G0032528.1 mouse_genomes_project 7 112236101 112237034 - MGP_C3HHeJ_P0085387 Olfr514 protein_coding protein_coding MGP_C3HHeJ_T0102204.1 MGP_C3HHeJ_G0040167.1 mouse_genomes_project 7 24930845 24944949 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0084891.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104438886 104468441 + MGP_C3HHeJ_P0084891 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084892.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104443104 104467954 + MGP_C3HHeJ_P0084892 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084893.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104443297 104465070 + MGP_C3HHeJ_P0084893 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084894.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104443522 104468006 + MGP_C3HHeJ_P0084894 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084895.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104443594 104468124 + MGP_C3HHeJ_P0084895 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084896.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104443635 104467866 + MGP_C3HHeJ_P0084896 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084897.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104443779 104466113 + MGP_C3HHeJ_P0084897 Stard10 protein_coding protein_coding MGP_C3HHeJ_T0084898.1 MGP_C3HHeJ_G0032283.1 mouse_genomes_project 7 104464292 104467954 + MGP_C3HHeJ_P0084898 Stard10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010818.1 MGP_C3HHeJ_G0008951.1 mouse_genomes_project 7 99189611 99189710 + Mir6394 miRNA miRNA MGP_C3HHeJ_T0081268.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10617561 10619952 - Ube2m protein_coding processed_transcript MGP_C3HHeJ_T0081269.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10617631 10619932 - MGP_C3HHeJ_P0081269 Ube2m protein_coding protein_coding MGP_C3HHeJ_T0081270.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10617892 10618953 - MGP_C3HHeJ_P0081270 Ube2m protein_coding protein_coding MGP_C3HHeJ_T0081271.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10617918 10620034 - MGP_C3HHeJ_P0081271 Ube2m protein_coding protein_coding MGP_C3HHeJ_T0081272.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10618280 10620051 - Ube2m protein_coding retained_intron MGP_C3HHeJ_T0081273.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10618746 10620576 - MGP_C3HHeJ_P0081273 Ube2m protein_coding protein_coding MGP_C3HHeJ_T0081274.1 MGP_C3HHeJ_G0031364.1 mouse_genomes_project 7 10618870 10619826 - Ube2m protein_coding processed_transcript MGP_C3HHeJ_T0084154.1 MGP_C3HHeJ_G0032094.1 mouse_genomes_project 7 81972478 81997794 - MGP_C3HHeJ_P0084154 Rhcg protein_coding protein_coding MGP_C3HHeJ_T0084155.1 MGP_C3HHeJ_G0032094.1 mouse_genomes_project 7 81972484 81974045 - MGP_C3HHeJ_P0084155 Rhcg protein_coding protein_coding MGP_C3HHeJ_T0084156.1 MGP_C3HHeJ_G0032094.1 mouse_genomes_project 7 81982820 81986927 - MGP_C3HHeJ_P0084156 Rhcg protein_coding protein_coding MGP_C3HHeJ_T0081958.1 MGP_C3HHeJ_G0031573.1 mouse_genomes_project 7 24395600 24419797 - MGP_C3HHeJ_P0081958 protein_coding protein_coding MGP_C3HHeJ_T0081959.1 MGP_C3HHeJ_G0031573.1 mouse_genomes_project 7 24395600 24419797 - MGP_C3HHeJ_P0081959 protein_coding protein_coding MGP_C3HHeJ_T0100819.1 MGP_C3HHeJ_G0039013.1 mouse_genomes_project 7 46221717 46221804 - Snord35b snoRNA snoRNA MGP_C3HHeJ_T0085652.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119955653 119958548 - MGP_C3HHeJ_P0085652 Rps13 protein_coding protein_coding MGP_C3HHeJ_T0085653.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119955659 119957535 - Rps13 protein_coding retained_intron MGP_C3HHeJ_T0085654.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119955660 119958483 - Rps13 protein_coding retained_intron MGP_C3HHeJ_T0085655.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119955660 119958488 - Rps13 protein_coding retained_intron MGP_C3HHeJ_T0085656.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119955660 119958519 - MGP_C3HHeJ_P0085656 Rps13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085657.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119956407 119958470 - Rps13 protein_coding retained_intron MGP_C3HHeJ_T0085658.1 MGP_C3HHeJ_G0032588.1 mouse_genomes_project 7 119957392 119958475 - Rps13 protein_coding retained_intron MGP_C3HHeJ_T0102280.1 MGP_C3HHeJ_G0040243.1 mouse_genomes_project 7 88259043 88261274 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005231.1 MGP_C3HHeJ_G0004431.1 mouse_genomes_project 7 136910783 136913034 + Gm16764 antisense antisense MGP_C3HHeJ_T0005232.1 MGP_C3HHeJ_G0004431.1 mouse_genomes_project 7 136910783 136913034 + Gm16764 antisense antisense MGP_C3HHeJ_T0005233.1 MGP_C3HHeJ_G0004431.1 mouse_genomes_project 7 136910799 136913034 + Gm16764 antisense antisense MGP_C3HHeJ_T0002220.1 MGP_C3HHeJ_G0002140.1 mouse_genomes_project 7 75988839 75989529 - TEC TEC MGP_C3HHeJ_T0102184.1 MGP_C3HHeJ_G0040148.1 mouse_genomes_project 7 12420340 12420730 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0015493.1 MGP_C3HHeJ_G0013597.1 mouse_genomes_project 7 1370460 1370923 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0085334.1 MGP_C3HHeJ_G0032482.1 mouse_genomes_project 7 110347215 110349414 - MGP_C3HHeJ_P0085334 Olfr2 protein_coding protein_coding MGP_C3HHeJ_T0083030.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44280018 44297388 - MGP_C3HHeJ_P0083030 Zfp715 protein_coding protein_coding MGP_C3HHeJ_T0083031.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44280344 44297396 - MGP_C3HHeJ_P0083031 Zfp715 protein_coding protein_coding MGP_C3HHeJ_T0083032.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44280344 44295627 - MGP_C3HHeJ_P0083032 Zfp715 protein_coding protein_coding MGP_C3HHeJ_T0083033.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44280344 44297404 - MGP_C3HHeJ_P0083033 Zfp715 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0083034.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44283773 44297236 - MGP_C3HHeJ_P0083034 Zfp715 protein_coding protein_coding MGP_C3HHeJ_T0083035.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44285297 44297435 - Zfp715 protein_coding retained_intron MGP_C3HHeJ_T0083036.1 MGP_C3HHeJ_G0031823.1 mouse_genomes_project 7 44285431 44297204 - MGP_C3HHeJ_P0083036 Zfp715 protein_coding protein_coding MGP_C3HHeJ_T0008920.1 MGP_C3HHeJ_G0007178.1 mouse_genomes_project 7 124437471 124441553 - 9030407P20Rik lincRNA lincRNA MGP_C3HHeJ_T0008921.1 MGP_C3HHeJ_G0007178.1 mouse_genomes_project 7 124437767 124441593 - 9030407P20Rik lincRNA lincRNA MGP_C3HHeJ_T0011593.1 MGP_C3HHeJ_G0009726.1 mouse_genomes_project 7 77482925 77483248 + Gm24858 misc_RNA misc_RNA MGP_C3HHeJ_T0008785.1 MGP_C3HHeJ_G0007088.1 mouse_genomes_project 7 44884704 44886032 - Gm44707 lincRNA lincRNA MGP_C3HHeJ_T0010773.1 MGP_C3HHeJ_G0008906.1 mouse_genomes_project 7 44454861 44454934 + Mir7051 miRNA miRNA MGP_C3HHeJ_T0084013.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75606168 75723827 - MGP_C3HHeJ_P0084013 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084014.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75606224 75647921 - MGP_C3HHeJ_P0084014 Chd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084015.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75609518 75626771 - MGP_C3HHeJ_P0084015 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084016.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75628781 75635130 - MGP_C3HHeJ_P0084016 Chd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084017.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75631350 75641276 - Chd2 protein_coding processed_transcript MGP_C3HHeJ_T0084018.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75653909 75660331 - Chd2 protein_coding processed_transcript MGP_C3HHeJ_T0084019.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75653915 75660333 - MGP_C3HHeJ_P0084019 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084020.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75653916 75658157 - Chd2 protein_coding retained_intron MGP_C3HHeJ_T0084021.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75677525 75681936 - MGP_C3HHeJ_P0084021 Chd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084022.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75679460 75681855 - MGP_C3HHeJ_P0084022 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084023.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75680798 75723826 - MGP_C3HHeJ_P0084023 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084024.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75681756 75683379 - Chd2 protein_coding retained_intron MGP_C3HHeJ_T0084025.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75687673 75719702 - MGP_C3HHeJ_P0084025 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084026.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75687703 75723817 - MGP_C3HHeJ_P0084026 Chd2 protein_coding protein_coding MGP_C3HHeJ_T0084027.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75720170 75723911 - Chd2 protein_coding retained_intron MGP_C3HHeJ_T0084028.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75721434 75723827 - Chd2 protein_coding processed_transcript MGP_C3HHeJ_T0084029.1 MGP_C3HHeJ_G0032073.1 mouse_genomes_project 7 75721878 75723606 - Chd2 protein_coding processed_transcript MGP_C3HHeJ_T0085049.1 MGP_C3HHeJ_G0032320.1 mouse_genomes_project 7 105859539 105860493 + MGP_C3HHeJ_P0085049 Olfr554 protein_coding protein_coding MGP_C3HHeJ_T0018153.1 MGP_C3HHeJ_G0015435.1 mouse_genomes_project 7 65752016 65756613 + Gm27252 processed_transcript lincRNA MGP_C3HHeJ_T0018154.1 MGP_C3HHeJ_G0015435.1 mouse_genomes_project 7 65753457 65756444 + Gm27252 processed_transcript antisense MGP_C3HHeJ_T0081314.1 MGP_C3HHeJ_G0031377.1 mouse_genomes_project 7 11620974 11723219 - MGP_C3HHeJ_P0081314 Sult2a4 protein_coding protein_coding MGP_C3HHeJ_T0085090.1 MGP_C3HHeJ_G0032358.1 mouse_genomes_project 7 106729987 106730938 + MGP_C3HHeJ_P0085090 Olfr608 protein_coding protein_coding MGP_C3HHeJ_T0005094.1 MGP_C3HHeJ_G0004332.1 mouse_genomes_project 7 23353696 23360415 - Gm26550 antisense antisense MGP_C3HHeJ_T0083161.1 MGP_C3HHeJ_G0031867.1 mouse_genomes_project 7 45426879 45444248 + MGP_C3HHeJ_P0083161 Syt3 protein_coding protein_coding MGP_C3HHeJ_T0083162.1 MGP_C3HHeJ_G0031867.1 mouse_genomes_project 7 45426904 45428225 + Syt3 protein_coding processed_transcript MGP_C3HHeJ_T0083163.1 MGP_C3HHeJ_G0031867.1 mouse_genomes_project 7 45426931 45444405 + MGP_C3HHeJ_P0083163 Syt3 protein_coding protein_coding MGP_C3HHeJ_T0083164.1 MGP_C3HHeJ_G0031867.1 mouse_genomes_project 7 45427381 45428827 + MGP_C3HHeJ_P0083164 Syt3 protein_coding protein_coding MGP_C3HHeJ_T0083165.1 MGP_C3HHeJ_G0031867.1 mouse_genomes_project 7 45427381 45428897 + MGP_C3HHeJ_P0083165 Syt3 protein_coding protein_coding MGP_C3HHeJ_T0083166.1 MGP_C3HHeJ_G0031867.1 mouse_genomes_project 7 45427645 45443982 + MGP_C3HHeJ_P0083166 Syt3 protein_coding protein_coding MGP_C3HHeJ_T0081267.1 MGP_C3HHeJ_G0031363.1 mouse_genomes_project 7 10614292 10617080 - MGP_C3HHeJ_P0081267 Chmp2a protein_coding protein_coding MGP_C3HHeJ_T0102272.1 MGP_C3HHeJ_G0040235.1 mouse_genomes_project 7 87673947 87676046 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005213.1 MGP_C3HHeJ_G0004415.1 mouse_genomes_project 7 125826193 125834236 + Gm44987 antisense antisense MGP_C3HHeJ_T0098177.1 MGP_C3HHeJ_G0036389.1 mouse_genomes_project 7 72843605 72843690 + Gm24880 rRNA rRNA MGP_C3HHeJ_T0082271.1 MGP_C3HHeJ_G0031657.1 mouse_genomes_project 7 27808552 27835174 - MGP_C3HHeJ_P0082271 Acp7 protein_coding protein_coding MGP_C3HHeJ_T0082272.1 MGP_C3HHeJ_G0031657.1 mouse_genomes_project 7 27817517 27834614 - Acp7 protein_coding processed_transcript MGP_C3HHeJ_T0082273.1 MGP_C3HHeJ_G0031657.1 mouse_genomes_project 7 27818006 27834614 - Acp7 protein_coding processed_transcript MGP_C3HHeJ_T0082274.1 MGP_C3HHeJ_G0031657.1 mouse_genomes_project 7 27833597 27834607 - Acp7 protein_coding processed_transcript MGP_C3HHeJ_T0082275.1 MGP_C3HHeJ_G0031657.1 mouse_genomes_project 7 27833630 27835439 - Acp7 protein_coding processed_transcript MGP_C3HHeJ_T0082047.1 MGP_C3HHeJ_G0031598.1 mouse_genomes_project 7 25816115 25834556 + MGP_C3HHeJ_P0082047 Cyp2g1 protein_coding protein_coding MGP_C3HHeJ_T0082048.1 MGP_C3HHeJ_G0031598.1 mouse_genomes_project 7 25824937 25827919 + Cyp2g1 protein_coding retained_intron MGP_C3HHeJ_T0083329.1 MGP_C3HHeJ_G0031903.1 mouse_genomes_project 7 46150815 46158903 - MGP_C3HHeJ_P0083329 Prrg2 protein_coding protein_coding MGP_C3HHeJ_T0086654.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133764694 133808724 + MGP_C3HHeJ_P0086654 Wdr11 protein_coding protein_coding MGP_C3HHeJ_T0086655.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133764739 133798640 + Wdr11 protein_coding retained_intron MGP_C3HHeJ_T0086656.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133764749 133785302 + Wdr11 protein_coding retained_intron MGP_C3HHeJ_T0086657.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133765899 133805855 + MGP_C3HHeJ_P0086657 Wdr11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086658.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133778077 133780808 + Wdr11 protein_coding processed_transcript MGP_C3HHeJ_T0086659.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133779568 133808722 + Wdr11 protein_coding retained_intron MGP_C3HHeJ_T0086660.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133780806 133787052 + MGP_C3HHeJ_P0086660 Wdr11 protein_coding protein_coding MGP_C3HHeJ_T0086661.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133798055 133808720 + Wdr11 protein_coding retained_intron MGP_C3HHeJ_T0086662.1 MGP_C3HHeJ_G0032786.1 mouse_genomes_project 7 133802032 133806657 + MGP_C3HHeJ_P0086662 Wdr11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015661.1 MGP_C3HHeJ_G0013765.1 mouse_genomes_project 7 89557299 89558232 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008966.1 MGP_C3HHeJ_G0007208.1 mouse_genomes_project 7 137213031 137254315 - 1500002F19Rik lincRNA lincRNA MGP_C3HHeJ_T0082895.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35566356 35610434 + MGP_C3HHeJ_P0082895 Cep89 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082896.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35566376 35610436 + MGP_C3HHeJ_P0082896 Cep89 protein_coding protein_coding MGP_C3HHeJ_T0082897.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35566428 35580306 + Cep89 protein_coding retained_intron MGP_C3HHeJ_T0082898.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35566437 35578960 + Cep89 protein_coding processed_transcript MGP_C3HHeJ_T0082899.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35566451 35578943 + MGP_C3HHeJ_P0082899 Cep89 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082900.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35586368 35588309 + Cep89 protein_coding processed_transcript MGP_C3HHeJ_T0082901.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35586460 35592315 + Cep89 protein_coding retained_intron MGP_C3HHeJ_T0082902.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35587828 35599965 + MGP_C3HHeJ_P0082902 Cep89 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0082903.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35588329 35599466 + Cep89 protein_coding processed_transcript MGP_C3HHeJ_T0082904.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35598955 35604321 + Cep89 protein_coding retained_intron MGP_C3HHeJ_T0082905.1 MGP_C3HHeJ_G0031792.1 mouse_genomes_project 7 35600072 35610428 + MGP_C3HHeJ_P0082905 Cep89 protein_coding protein_coding MGP_C3HHeJ_T0084527.1 MGP_C3HHeJ_G0032196.1 mouse_genomes_project 7 92207572 92217372 - MGP_C3HHeJ_P0084527 Prss23 protein_coding protein_coding MGP_C3HHeJ_T0082260.1 MGP_C3HHeJ_G0031654.1 mouse_genomes_project 7 27637789 27645912 + MGP_C3HHeJ_P0082260 Lrfn1 protein_coding protein_coding MGP_C3HHeJ_T0082261.1 MGP_C3HHeJ_G0031654.1 mouse_genomes_project 7 27637957 27650022 + MGP_C3HHeJ_P0082261 Lrfn1 protein_coding protein_coding MGP_C3HHeJ_T0082262.1 MGP_C3HHeJ_G0031654.1 mouse_genomes_project 7 27638047 27647038 + Lrfn1 protein_coding retained_intron MGP_C3HHeJ_T0082263.1 MGP_C3HHeJ_G0031654.1 mouse_genomes_project 7 27645284 27656136 + MGP_C3HHeJ_P0082263 Lrfn1 protein_coding protein_coding MGP_C3HHeJ_T0082264.1 MGP_C3HHeJ_G0031654.1 mouse_genomes_project 7 27645284 27649957 + MGP_C3HHeJ_P0082264 Lrfn1 protein_coding protein_coding MGP_C3HHeJ_T0005116.1 MGP_C3HHeJ_G0004349.1 mouse_genomes_project 7 30290051 30290652 + Gm29439 antisense antisense MGP_C3HHeJ_T0010846.1 MGP_C3HHeJ_G0008979.1 mouse_genomes_project 7 146685959 146686022 + Mir3104 miRNA miRNA MGP_C3HHeJ_T0084059.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80496399 80907394 - MGP_C3HHeJ_P0084059 Ntrk3 protein_coding protein_coding MGP_C3HHeJ_T0084060.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80503268 80515136 - MGP_C3HHeJ_P0084060 Ntrk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084061.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80514772 80905929 - MGP_C3HHeJ_P0084061 Ntrk3 protein_coding protein_coding MGP_C3HHeJ_T0084062.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80514799 80905935 - MGP_C3HHeJ_P0084062 Ntrk3 protein_coding protein_coding MGP_C3HHeJ_T0084063.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80571135 80586803 - MGP_C3HHeJ_P0084063 Ntrk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084064.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80625213 80906968 - MGP_C3HHeJ_P0084064 Ntrk3 protein_coding protein_coding MGP_C3HHeJ_T0084065.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80626846 80707782 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084066.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80627154 80686117 - MGP_C3HHeJ_P0084066 Ntrk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0084067.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80686078 80776381 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084068.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80773883 80906961 - Ntrk3 protein_coding retained_intron MGP_C3HHeJ_T0084069.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80802264 80898873 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084070.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80843791 80963543 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084071.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80844525 80907389 - MGP_C3HHeJ_P0084071 Ntrk3 protein_coding protein_coding MGP_C3HHeJ_T0084072.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80905681 81002380 - MGP_C3HHeJ_P0084072 Ntrk3 protein_coding protein_coding MGP_C3HHeJ_T0084073.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80905951 80909080 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084074.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80911447 81062148 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084075.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80917778 81081945 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084076.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 80924824 81002765 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084077.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 81070630 81081947 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0084078.1 MGP_C3HHeJ_G0032081.1 mouse_genomes_project 7 81074405 81081947 - Ntrk3 protein_coding processed_transcript MGP_C3HHeJ_T0082671.1 MGP_C3HHeJ_G0031749.1 mouse_genomes_project 7 30235828 30242257 - MGP_C3HHeJ_P0082671 Ffar2 protein_coding protein_coding MGP_C3HHeJ_T0082672.1 MGP_C3HHeJ_G0031749.1 mouse_genomes_project 7 30235837 30238616 - MGP_C3HHeJ_P0082672 Ffar2 protein_coding protein_coding MGP_C3HHeJ_T0082673.1 MGP_C3HHeJ_G0031749.1 mouse_genomes_project 7 30236592 30240130 - MGP_C3HHeJ_P0082673 Ffar2 protein_coding protein_coding MGP_C3HHeJ_T0082674.1 MGP_C3HHeJ_G0031749.1 mouse_genomes_project 7 30237044 30238615 - MGP_C3HHeJ_P0082674 Ffar2 protein_coding protein_coding MGP_C3HHeJ_T0082675.1 MGP_C3HHeJ_G0031749.1 mouse_genomes_project 7 30237162 30238454 - MGP_C3HHeJ_P0082675 Ffar2 protein_coding protein_coding MGP_C3HHeJ_T0082676.1 MGP_C3HHeJ_G0031749.1 mouse_genomes_project 7 30237189 30238624 - MGP_C3HHeJ_P0082676 Ffar2 protein_coding protein_coding MGP_C3HHeJ_T0002200.1 MGP_C3HHeJ_G0002121.1 mouse_genomes_project 7 57613426 57617446 - TEC TEC MGP_C3HHeJ_T0083093.1 MGP_C3HHeJ_G0031841.1 mouse_genomes_project 7 44659387 44668599 - MGP_C3HHeJ_P0083093 Siglece protein_coding protein_coding MGP_C3HHeJ_T0083094.1 MGP_C3HHeJ_G0031841.1 mouse_genomes_project 7 44659858 44667791 - MGP_C3HHeJ_P0083094 Siglece protein_coding protein_coding MGP_C3HHeJ_T0085133.1 MGP_C3HHeJ_G0032399.1 mouse_genomes_project 7 107428644 107431301 - MGP_C3HHeJ_P0085133 Ubqln3 protein_coding protein_coding MGP_C3HHeJ_T0005072.1 MGP_C3HHeJ_G0004318.1 mouse_genomes_project 7 1485703 1487354 + Gm15873 antisense antisense MGP_C3HHeJ_T0005073.1 MGP_C3HHeJ_G0004318.1 mouse_genomes_project 7 1485801 1489739 + Gm15873 antisense antisense MGP_C3HHeJ_T0081734.1 MGP_C3HHeJ_G0031513.1 mouse_genomes_project 7 22093114 22094236 - MGP_C3HHeJ_P0081734 protein_coding protein_coding MGP_C3HHeJ_T0005095.1 MGP_C3HHeJ_G0004333.1 mouse_genomes_project 7 24036392 24037955 + 4933430L12Rik antisense antisense MGP_C3HHeJ_T0008926.1 MGP_C3HHeJ_G0007183.1 mouse_genomes_project 7 128818016 128825246 + Gm45092 lincRNA lincRNA MGP_C3HHeJ_T0085251.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108925901 108932114 - MGP_C3HHeJ_P0085251 Arfip2 protein_coding protein_coding MGP_C3HHeJ_T0085252.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108925905 108931612 - Arfip2 protein_coding retained_intron MGP_C3HHeJ_T0085253.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108927319 108932012 - MGP_C3HHeJ_P0085253 Arfip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085254.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108927322 108929601 - Arfip2 protein_coding processed_transcript MGP_C3HHeJ_T0085255.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108927354 108932035 - MGP_C3HHeJ_P0085255 Arfip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085256.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108927355 108932049 - MGP_C3HHeJ_P0085256 Arfip2 protein_coding protein_coding MGP_C3HHeJ_T0085257.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108928600 108929744 - Arfip2 protein_coding processed_transcript MGP_C3HHeJ_T0085258.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108928818 108929614 - Arfip2 protein_coding processed_transcript MGP_C3HHeJ_T0085259.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108928886 108932006 - MGP_C3HHeJ_P0085259 Arfip2 protein_coding protein_coding MGP_C3HHeJ_T0085260.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108929546 108932033 - MGP_C3HHeJ_P0085260 Arfip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0085261.1 MGP_C3HHeJ_G0032453.1 mouse_genomes_project 7 108930284 108932038 - Arfip2 protein_coding retained_intron MGP_C3HHeJ_T0002223.1 MGP_C3HHeJ_G0002143.1 mouse_genomes_project 7 77704449 77706076 + TEC TEC MGP_C3HHeJ_T0087410.1 MGP_C3HHeJ_G0032967.1 mouse_genomes_project 7 147847857 147863056 + MGP_C3HHeJ_P0087410 Cd81 protein_coding protein_coding MGP_C3HHeJ_T0087411.1 MGP_C3HHeJ_G0032967.1 mouse_genomes_project 7 147847912 147860735 + Cd81 protein_coding retained_intron MGP_C3HHeJ_T0087412.1 MGP_C3HHeJ_G0032967.1 mouse_genomes_project 7 147853692 147862284 + Cd81 protein_coding processed_transcript MGP_C3HHeJ_T0087413.1 MGP_C3HHeJ_G0032967.1 mouse_genomes_project 7 147861322 147862727 + Cd81 protein_coding retained_intron MGP_C3HHeJ_T0081097.1 MGP_C3HHeJ_G0031281.1 mouse_genomes_project 7 2050817 2051943 + MGP_C3HHeJ_P0081097 protein_coding protein_coding MGP_C3HHeJ_T0081115.1 MGP_C3HHeJ_G0031291.1 mouse_genomes_project 7 2312363 2362333 - MGP_C3HHeJ_P0081115 Nlrp2 protein_coding protein_coding MGP_C3HHeJ_T0087295.1 MGP_C3HHeJ_G0032945.1 mouse_genomes_project 7 146896868 146904399 - MGP_C3HHeJ_P0087295 protein_coding protein_coding MGP_C3HHeJ_T0102236.1 MGP_C3HHeJ_G0040199.1 mouse_genomes_project 7 45040263 45042426 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0083924.1 MGP_C3HHeJ_G0032053.1 mouse_genomes_project 7 68022214 68093531 + MGP_C3HHeJ_P0083924 Chsy1 protein_coding protein_coding MGP_C3HHeJ_T0011590.1 MGP_C3HHeJ_G0009723.1 mouse_genomes_project 7 45270728 45271016 + Gm25386 misc_RNA misc_RNA MGP_C3HHeJ_T0102218.1 MGP_C3HHeJ_G0040181.1 mouse_genomes_project 7 33923206 33924044 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0085132.1 MGP_C3HHeJ_G0032398.1 mouse_genomes_project 7 107410965 107412880 - MGP_C3HHeJ_P0085132 4931431F19Rik protein_coding protein_coding MGP_C3HHeJ_T0081030.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1716265 1724048 + MGP_C3HHeJ_P0081030 Suv420h2 protein_coding protein_coding MGP_C3HHeJ_T0081031.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1716303 1718239 + Suv420h2 protein_coding retained_intron MGP_C3HHeJ_T0081032.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1716306 1719204 + MGP_C3HHeJ_P0081032 Suv420h2 protein_coding protein_coding MGP_C3HHeJ_T0081033.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1716317 1724048 + MGP_C3HHeJ_P0081033 Suv420h2 protein_coding protein_coding MGP_C3HHeJ_T0081034.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1716335 1724048 + MGP_C3HHeJ_P0081034 Suv420h2 protein_coding protein_coding MGP_C3HHeJ_T0081035.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1717785 1718688 + Suv420h2 protein_coding retained_intron MGP_C3HHeJ_T0081036.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1718000 1723432 + MGP_C3HHeJ_P0081036 Suv420h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0081037.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1718474 1722442 + Suv420h2 protein_coding retained_intron MGP_C3HHeJ_T0081038.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1718604 1719714 + Suv420h2 protein_coding retained_intron MGP_C3HHeJ_T0081039.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1718807 1719838 + Suv420h2 protein_coding retained_intron MGP_C3HHeJ_T0081040.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1718894 1722655 + Suv420h2 protein_coding retained_intron MGP_C3HHeJ_T0081041.1 MGP_C3HHeJ_G0031260.1 mouse_genomes_project 7 1722341 1723130 + MGP_C3HHeJ_P0081041 Suv420h2 protein_coding protein_coding MGP_C3HHeJ_T0015653.1 MGP_C3HHeJ_G0013757.1 mouse_genomes_project 7 83714855 83715368 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0082003.1 MGP_C3HHeJ_G0031583.1 mouse_genomes_project 7 24612310 24646486 - MGP_C3HHeJ_P0082003 Hnrnpul1 protein_coding protein_coding MGP_C3HHeJ_T0082004.1 MGP_C3HHeJ_G0031583.1 mouse_genomes_project 7 24628458 24646552 - MGP_C3HHeJ_P0082004 Hnrnpul1 protein_coding protein_coding MGP_C3HHeJ_T0082005.1 MGP_C3HHeJ_G0031583.1 mouse_genomes_project 7 24631143 24633427 - Hnrnpul1 protein_coding retained_intron MGP_C3HHeJ_T0082006.1 MGP_C3HHeJ_G0031583.1 mouse_genomes_project 7 24633602 24636217 - Hnrnpul1 protein_coding retained_intron MGP_C3HHeJ_T0005236.1 MGP_C3HHeJ_G0004434.1 mouse_genomes_project 7 145465719 145474580 - C330022C24Rik antisense antisense MGP_C3HHeJ_T0008972.1 MGP_C3HHeJ_G0007212.1 mouse_genomes_project 7 140097687 140114324 - 5830432E09Rik lincRNA lincRNA MGP_C3HHeJ_T0008973.1 MGP_C3HHeJ_G0007212.1 mouse_genomes_project 7 140110497 140114355 - 5830432E09Rik lincRNA lincRNA MGP_C3HHeJ_T0005228.1 MGP_C3HHeJ_G0004428.1 mouse_genomes_project 7 132864806 132865935 + Gm44674 antisense antisense MGP_C3HHeJ_T0081617.1 MGP_C3HHeJ_G0031476.1 mouse_genomes_project 7 17735327 17736895 + Ppp1r13l protein_coding processed_transcript MGP_C3HHeJ_T0081618.1 MGP_C3HHeJ_G0031476.1 mouse_genomes_project 7 17735348 17745572 + MGP_C3HHeJ_P0081618 Ppp1r13l protein_coding protein_coding MGP_C3HHeJ_T0081619.1 MGP_C3HHeJ_G0031476.1 mouse_genomes_project 7 17736224 17745568 + MGP_C3HHeJ_P0081619 Ppp1r13l protein_coding protein_coding MGP_C3HHeJ_T0081620.1 MGP_C3HHeJ_G0031476.1 mouse_genomes_project 7 17736794 17754180 + MGP_C3HHeJ_P0081620 Ppp1r13l protein_coding protein_coding MGP_C3HHeJ_T0081621.1 MGP_C3HHeJ_G0031476.1 mouse_genomes_project 7 17744149 17745546 + MGP_C3HHeJ_P0081621 Ppp1r13l protein_coding protein_coding MGP_C3HHeJ_T0008828.1 MGP_C3HHeJ_G0007122.1 mouse_genomes_project 7 75287426 75289536 + 4933435G04Rik lincRNA lincRNA MGP_C3HHeJ_T0085381.1 MGP_C3HHeJ_G0032522.1 mouse_genomes_project 7 112026501 112027452 + MGP_C3HHeJ_P0085381 Olfr507 protein_coding protein_coding MGP_C3HHeJ_T0015490.1 MGP_C3HHeJ_G0013594.1 mouse_genomes_project 7 1259691 1260056 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0086222.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130850250 130860562 - MGP_C3HHeJ_P0086222 protein_coding protein_coding MGP_C3HHeJ_T0086223.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130850870 130860754 - MGP_C3HHeJ_P0086223 protein_coding protein_coding MGP_C3HHeJ_T0086224.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130851723 130861668 - protein_coding retained_intron MGP_C3HHeJ_T0086225.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130851870 130861151 - MGP_C3HHeJ_P0086225 protein_coding protein_coding MGP_C3HHeJ_T0086226.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130851972 130861023 - protein_coding processed_transcript MGP_C3HHeJ_T0086227.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130852060 130861076 - MGP_C3HHeJ_P0086227 protein_coding protein_coding MGP_C3HHeJ_T0086228.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130852108 130857021 - MGP_C3HHeJ_P0086228 protein_coding protein_coding MGP_C3HHeJ_T0086229.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130852185 130861652 - MGP_C3HHeJ_P0086229 protein_coding protein_coding MGP_C3HHeJ_T0086230.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130852220 130861074 - MGP_C3HHeJ_P0086230 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0086231.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130855491 130861160 - protein_coding retained_intron MGP_C3HHeJ_T0086232.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130856966 130861082 - protein_coding processed_transcript MGP_C3HHeJ_T0086233.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130856989 130861135 - MGP_C3HHeJ_P0086233 protein_coding protein_coding MGP_C3HHeJ_T0086234.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130857004 130860939 - MGP_C3HHeJ_P0086234 protein_coding protein_coding MGP_C3HHeJ_T0086235.1 MGP_C3HHeJ_G0032702.1 mouse_genomes_project 7 130860530 130861139 - protein_coding processed_transcript MGP_C3HHeJ_T0008914.1 MGP_C3HHeJ_G0007174.1 mouse_genomes_project 7 118627614 118660912 + Gm44944 lincRNA lincRNA MGP_C3HHeJ_T0008915.1 MGP_C3HHeJ_G0007174.1 mouse_genomes_project 7 118659486 118661201 + Gm44944 lincRNA lincRNA MGP_C3HHeJ_T0008916.1 MGP_C3HHeJ_G0007174.1 mouse_genomes_project 7 118660925 118661230 + Gm44944 lincRNA lincRNA MGP_C3HHeJ_T0087012.1 MGP_C3HHeJ_G0032880.1 mouse_genomes_project 7 145222665 145223927 + MGP_C3HHeJ_P0087012 Olfr46 protein_coding protein_coding MGP_C3HHeJ_T0015594.1 MGP_C3HHeJ_G0013698.1 mouse_genomes_project 7 43583032 43583543 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087312.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147214004 147219891 + Syt8 protein_coding processed_transcript MGP_C3HHeJ_T0087313.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147214100 147218984 + Syt8 protein_coding processed_transcript MGP_C3HHeJ_T0087314.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147214131 147220412 + MGP_C3HHeJ_P0087314 Syt8 protein_coding protein_coding MGP_C3HHeJ_T0087315.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147214155 147220344 + Syt8 protein_coding retained_intron MGP_C3HHeJ_T0087316.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147214155 147220344 + MGP_C3HHeJ_P0087316 Syt8 protein_coding protein_coding MGP_C3HHeJ_T0087317.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147214155 147220344 + MGP_C3HHeJ_P0087317 Syt8 protein_coding protein_coding MGP_C3HHeJ_T0087318.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147216859 147220321 + MGP_C3HHeJ_P0087318 Syt8 protein_coding protein_coding MGP_C3HHeJ_T0087319.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147218147 147218558 + MGP_C3HHeJ_P0087319 Syt8 protein_coding protein_coding MGP_C3HHeJ_T0087320.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147218436 147220000 + Syt8 protein_coding retained_intron MGP_C3HHeJ_T0087321.1 MGP_C3HHeJ_G0032954.1 mouse_genomes_project 7 147219030 147220328 + Syt8 protein_coding retained_intron MGP_C3HHeJ_T0015555.1 MGP_C3HHeJ_G0013659.1 mouse_genomes_project 7 29207356 29207772 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006066.1 MGP_C3HHeJ_G0005058.1 mouse_genomes_project 10 92855715 93067339 - Gm20757 lincRNA lincRNA MGP_C3HHeJ_T0003036.1 MGP_C3HHeJ_G0002828.1 mouse_genomes_project 10 123868490 123869853 + C030027H14Rik antisense antisense MGP_C3HHeJ_T0026918.1 MGP_C3HHeJ_G0017522.1 mouse_genomes_project 10 119113000 119117611 - MGP_C3HHeJ_P0026918 Lyz1 protein_coding protein_coding MGP_C3HHeJ_T0025879.1 MGP_C3HHeJ_G0017235.1 mouse_genomes_project 10 79904399 79933699 + MGP_C3HHeJ_P0025879 Arid3a protein_coding protein_coding MGP_C3HHeJ_T0025880.1 MGP_C3HHeJ_G0017235.1 mouse_genomes_project 10 79904495 79933392 + MGP_C3HHeJ_P0025880 Arid3a protein_coding protein_coding MGP_C3HHeJ_T0025881.1 MGP_C3HHeJ_G0017235.1 mouse_genomes_project 10 79904697 79933384 + MGP_C3HHeJ_P0025881 Arid3a protein_coding protein_coding MGP_C3HHeJ_T0025882.1 MGP_C3HHeJ_G0017235.1 mouse_genomes_project 10 79907638 79908433 + MGP_C3HHeJ_P0025882 Arid3a protein_coding protein_coding MGP_C3HHeJ_T0025883.1 MGP_C3HHeJ_G0017235.1 mouse_genomes_project 10 79924884 79931324 + Arid3a protein_coding processed_transcript MGP_C3HHeJ_T0024878.1 MGP_C3HHeJ_G0016955.1 mouse_genomes_project 10 42151966 42157064 + MGP_C3HHeJ_P0024878 Cd24a protein_coding protein_coding MGP_C3HHeJ_T0024278.1 MGP_C3HHeJ_G0016761.1 mouse_genomes_project 10 4997311 5030634 + MGP_C3HHeJ_P0024278 Ppil4 protein_coding protein_coding MGP_C3HHeJ_T0024279.1 MGP_C3HHeJ_G0016761.1 mouse_genomes_project 10 4997328 5014792 + Ppil4 protein_coding retained_intron MGP_C3HHeJ_T0024280.1 MGP_C3HHeJ_G0016761.1 mouse_genomes_project 10 4997341 5020297 + MGP_C3HHeJ_P0024280 Ppil4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024281.1 MGP_C3HHeJ_G0016761.1 mouse_genomes_project 10 5004952 5012119 + Ppil4 protein_coding retained_intron MGP_C3HHeJ_T0026845.1 MGP_C3HHeJ_G0017491.1 mouse_genomes_project 10 113540112 113577358 + MGP_C3HHeJ_P0026845 Glipr1l1 protein_coding protein_coding MGP_C3HHeJ_T0006025.1 MGP_C3HHeJ_G0005036.1 mouse_genomes_project 10 62444858 62457744 + Gm16145 lincRNA lincRNA MGP_C3HHeJ_T0027367.1 MGP_C3HHeJ_G0017684.1 mouse_genomes_project 10 132135506 132139394 - MGP_C3HHeJ_P0027367 Olfr806 protein_coding protein_coding MGP_C3HHeJ_T0027368.1 MGP_C3HHeJ_G0017684.1 mouse_genomes_project 10 132135506 132136398 - MGP_C3HHeJ_P0027368 Olfr806 protein_coding protein_coding MGP_C3HHeJ_T0026153.1 MGP_C3HHeJ_G0017302.1 mouse_genomes_project 10 81228702 81236396 + MGP_C3HHeJ_P0026153 Eef2 protein_coding protein_coding MGP_C3HHeJ_T0026154.1 MGP_C3HHeJ_G0017302.1 mouse_genomes_project 10 81228721 81236390 + MGP_C3HHeJ_P0026154 Eef2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012312.1 MGP_C3HHeJ_G0010416.1 mouse_genomes_project 10 58568567 58568816 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026797.1 MGP_C3HHeJ_G0017473.1 mouse_genomes_project 10 108517821 108672619 + MGP_C3HHeJ_P0026797 Lin7a protein_coding protein_coding MGP_C3HHeJ_T0026798.1 MGP_C3HHeJ_G0017473.1 mouse_genomes_project 10 108517821 108672619 + MGP_C3HHeJ_P0026798 Lin7a protein_coding protein_coding MGP_C3HHeJ_T0024836.1 MGP_C3HHeJ_G0016944.1 mouse_genomes_project 10 40806211 40986956 - MGP_C3HHeJ_P0024836 Lace1 protein_coding protein_coding MGP_C3HHeJ_T0024837.1 MGP_C3HHeJ_G0016944.1 mouse_genomes_project 10 40806219 40986970 - MGP_C3HHeJ_P0024837 Lace1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024838.1 MGP_C3HHeJ_G0016944.1 mouse_genomes_project 10 40807213 40920748 - MGP_C3HHeJ_P0024838 Lace1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024583.1 MGP_C3HHeJ_G0016858.1 mouse_genomes_project 10 23282226 23444838 + MGP_C3HHeJ_P0024583 Epb41l2 protein_coding protein_coding MGP_C3HHeJ_T0024584.1 MGP_C3HHeJ_G0016858.1 mouse_genomes_project 10 23282369 23412228 + MGP_C3HHeJ_P0024584 Epb41l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024585.1 MGP_C3HHeJ_G0016858.1 mouse_genomes_project 10 23330725 23444838 + MGP_C3HHeJ_P0024585 Epb41l2 protein_coding protein_coding MGP_C3HHeJ_T0024586.1 MGP_C3HHeJ_G0016858.1 mouse_genomes_project 10 23414152 23444841 + MGP_C3HHeJ_P0024586 Epb41l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026105.1 MGP_C3HHeJ_G0017290.1 mouse_genomes_project 10 80941592 80943112 - MGP_C3HHeJ_P0026105 Timm13 protein_coding protein_coding MGP_C3HHeJ_T0026472.1 MGP_C3HHeJ_G0017386.1 mouse_genomes_project 10 88588079 88589383 + MGP_C3HHeJ_P0026472 Pmch protein_coding protein_coding MGP_C3HHeJ_T0016873.1 MGP_C3HHeJ_G0014891.1 mouse_genomes_project 10 18204948 18208837 - 4930403O15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0003017.1 MGP_C3HHeJ_G0002817.1 mouse_genomes_project 10 112160252 112281897 - 1700020G17Rik antisense antisense MGP_C3HHeJ_T0003018.1 MGP_C3HHeJ_G0002817.1 mouse_genomes_project 10 112176799 112281927 - 1700020G17Rik antisense antisense MGP_C3HHeJ_T0003019.1 MGP_C3HHeJ_G0002817.1 mouse_genomes_project 10 112188412 112281959 - 1700020G17Rik antisense antisense MGP_C3HHeJ_T0003020.1 MGP_C3HHeJ_G0002817.1 mouse_genomes_project 10 112212613 112281946 - 1700020G17Rik antisense antisense MGP_C3HHeJ_T0098720.1 MGP_C3HHeJ_G0036914.1 mouse_genomes_project 10 75191681 75191794 - Gm26402 snRNA snRNA MGP_C3HHeJ_T0026698.1 MGP_C3HHeJ_G0017433.1 mouse_genomes_project 10 96199524 96226792 - MGP_C3HHeJ_P0026698 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026699.1 MGP_C3HHeJ_G0017433.1 mouse_genomes_project 10 96201829 96207127 - protein_coding retained_intron MGP_C3HHeJ_T0026700.1 MGP_C3HHeJ_G0017433.1 mouse_genomes_project 10 96202513 96226738 - protein_coding processed_transcript MGP_C3HHeJ_T0026701.1 MGP_C3HHeJ_G0017433.1 mouse_genomes_project 10 96225534 96231133 - MGP_C3HHeJ_P0026701 protein_coding protein_coding MGP_C3HHeJ_T0026702.1 MGP_C3HHeJ_G0017433.1 mouse_genomes_project 10 96227245 96230944 - protein_coding processed_transcript MGP_C3HHeJ_T0026703.1 MGP_C3HHeJ_G0017433.1 mouse_genomes_project 10 96229366 96230275 - protein_coding processed_transcript MGP_C3HHeJ_T0025807.1 MGP_C3HHeJ_G0017218.1 mouse_genomes_project 10 79683597 79703053 + MGP_C3HHeJ_P0025807 Hcn2 protein_coding protein_coding MGP_C3HHeJ_T0026047.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80554063 80559024 - Rexo1 protein_coding retained_intron MGP_C3HHeJ_T0026048.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80554066 80575173 - MGP_C3HHeJ_P0026048 Rexo1 protein_coding protein_coding MGP_C3HHeJ_T0026049.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80554810 80561109 - MGP_C3HHeJ_P0026049 Rexo1 protein_coding protein_coding MGP_C3HHeJ_T0026050.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80555414 80559990 - Rexo1 protein_coding retained_intron MGP_C3HHeJ_T0026051.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80555414 80559658 - Rexo1 protein_coding retained_intron MGP_C3HHeJ_T0026052.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80555757 80557455 - MGP_C3HHeJ_P0026052 Rexo1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026053.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80559184 80562650 - MGP_C3HHeJ_P0026053 Rexo1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026054.1 MGP_C3HHeJ_G0017269.1 mouse_genomes_project 10 80560514 80562648 - Rexo1 protein_coding processed_transcript MGP_C3HHeJ_T0026757.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 102764866 103125200 + Mgat4c protein_coding retained_intron MGP_C3HHeJ_T0026758.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 102764866 103519934 + MGP_C3HHeJ_P0026758 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026759.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 102765020 103504645 + Mgat4c protein_coding processed_transcript MGP_C3HHeJ_T0026760.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 102765020 103505279 + MGP_C3HHeJ_P0026760 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026761.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 102765125 103511800 + MGP_C3HHeJ_P0026761 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026762.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103285363 103516844 + MGP_C3HHeJ_P0026762 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026763.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103285363 103519937 + MGP_C3HHeJ_P0026763 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026764.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103285383 103409446 + Mgat4c protein_coding processed_transcript MGP_C3HHeJ_T0026765.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103285394 103505206 + MGP_C3HHeJ_P0026765 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026766.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103285410 103409447 + Mgat4c protein_coding processed_transcript MGP_C3HHeJ_T0026767.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103285584 103519937 + MGP_C3HHeJ_P0026767 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0026768.1 MGP_C3HHeJ_G0017462.1 mouse_genomes_project 10 103501448 103518781 + MGP_C3HHeJ_P0026768 Mgat4c protein_coding protein_coding MGP_C3HHeJ_T0024756.1 MGP_C3HHeJ_G0016921.1 mouse_genomes_project 10 38616725 38626299 - MGP_C3HHeJ_P0024756 Gtf3c6 protein_coding protein_coding MGP_C3HHeJ_T0026931.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119535198 119557492 - MGP_C3HHeJ_P0026931 Mdm2 protein_coding protein_coding MGP_C3HHeJ_T0026932.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119535198 119557492 - MGP_C3HHeJ_P0026932 Mdm2 protein_coding protein_coding MGP_C3HHeJ_T0026933.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119535205 119556756 - MGP_C3HHeJ_P0026933 Mdm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026934.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119536421 119557419 - Mdm2 protein_coding retained_intron MGP_C3HHeJ_T0026935.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119536555 119537833 - Mdm2 protein_coding retained_intron MGP_C3HHeJ_T0026936.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119541754 119556812 - Mdm2 protein_coding processed_transcript MGP_C3HHeJ_T0026937.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119542861 119557445 - Mdm2 protein_coding processed_transcript MGP_C3HHeJ_T0026938.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119549008 119557026 - Mdm2 protein_coding processed_transcript MGP_C3HHeJ_T0026939.1 MGP_C3HHeJ_G0017525.1 mouse_genomes_project 10 119556451 119557448 - Mdm2 protein_coding retained_intron MGP_C3HHeJ_T0025729.1 MGP_C3HHeJ_G0017179.1 mouse_genomes_project 10 77877114 77887339 + MGP_C3HHeJ_P0025729 Icosl protein_coding protein_coding MGP_C3HHeJ_T0012310.1 MGP_C3HHeJ_G0010414.1 mouse_genomes_project 10 56698522 56699078 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024591.1 MGP_C3HHeJ_G0016862.1 mouse_genomes_project 10 24136996 24183642 + MGP_C3HHeJ_P0024591 Samd3 protein_coding protein_coding MGP_C3HHeJ_T0024592.1 MGP_C3HHeJ_G0016862.1 mouse_genomes_project 10 24136996 24168680 + MGP_C3HHeJ_P0024592 Samd3 protein_coding protein_coding MGP_C3HHeJ_T0002945.1 MGP_C3HHeJ_G0002760.1 mouse_genomes_project 10 11585806 11590548 - Gm28289 antisense antisense MGP_C3HHeJ_T0009483.1 MGP_C3HHeJ_G0007616.1 mouse_genomes_project 10 9281919 9282006 + Gm22194 miRNA miRNA MGP_C3HHeJ_T0025801.1 MGP_C3HHeJ_G0017216.1 mouse_genomes_project 10 79652311 79660464 + MGP_C3HHeJ_P0025801 Gzmm protein_coding protein_coding MGP_C3HHeJ_T0025802.1 MGP_C3HHeJ_G0017216.1 mouse_genomes_project 10 79658960 79660463 + Gzmm protein_coding processed_transcript MGP_C3HHeJ_T0026397.1 MGP_C3HHeJ_G0017363.1 mouse_genomes_project 10 85495278 85503871 - MGP_C3HHeJ_P0026397 Mterf2 protein_coding protein_coding MGP_C3HHeJ_T0026194.1 MGP_C3HHeJ_G0017314.1 mouse_genomes_project 10 81405798 81413222 + MGP_C3HHeJ_P0026194 Tbxa2r protein_coding protein_coding MGP_C3HHeJ_T0002992.1 MGP_C3HHeJ_G0002798.1 mouse_genomes_project 10 81065112 81066573 + Gm16099 antisense antisense MGP_C3HHeJ_T0002993.1 MGP_C3HHeJ_G0002798.1 mouse_genomes_project 10 81065384 81066867 + Gm16099 antisense antisense MGP_C3HHeJ_T0024429.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16036816 16171879 + MGP_C3HHeJ_P0024429 Nhsl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024430.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16055944 16069658 + Nhsl1 protein_coding processed_transcript MGP_C3HHeJ_T0024431.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16055981 16160035 + Nhsl1 protein_coding retained_intron MGP_C3HHeJ_T0024432.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16055981 16181474 + MGP_C3HHeJ_P0024432 Nhsl1 protein_coding protein_coding MGP_C3HHeJ_T0024433.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16117419 16120949 + Nhsl1 protein_coding retained_intron MGP_C3HHeJ_T0024434.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16117499 16145605 + Nhsl1 protein_coding processed_transcript MGP_C3HHeJ_T0024435.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16117512 16173549 + MGP_C3HHeJ_P0024435 Nhsl1 protein_coding protein_coding MGP_C3HHeJ_T0024436.1 MGP_C3HHeJ_G0016799.1 mouse_genomes_project 10 16117512 16181471 + MGP_C3HHeJ_P0024436 Nhsl1 protein_coding protein_coding MGP_C3HHeJ_T0101619.1 MGP_C3HHeJ_G0039585.1 mouse_genomes_project 10 131410928 131411858 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099958.1 MGP_C3HHeJ_G0038152.1 mouse_genomes_project 10 81232146 81232210 + Snord37 snoRNA snoRNA MGP_C3HHeJ_T0024332.1 MGP_C3HHeJ_G0016777.1 mouse_genomes_project 10 10323081 10351937 - MGP_C3HHeJ_P0024332 Stx11 protein_coding protein_coding MGP_C3HHeJ_T0024333.1 MGP_C3HHeJ_G0016777.1 mouse_genomes_project 10 10323081 10351937 - MGP_C3HHeJ_P0024333 Stx11 protein_coding protein_coding MGP_C3HHeJ_T0024379.1 MGP_C3HHeJ_G0016785.1 mouse_genomes_project 10 10958743 10969220 + MGP_C3HHeJ_P0024379 Adat2 protein_coding protein_coding MGP_C3HHeJ_T0012297.1 MGP_C3HHeJ_G0010401.1 mouse_genomes_project 10 29678986 29679600 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025545.1 MGP_C3HHeJ_G0017129.1 mouse_genomes_project 10 75459343 75460199 - MGP_C3HHeJ_P0025545 Mif protein_coding protein_coding MGP_C3HHeJ_T0012332.1 MGP_C3HHeJ_G0010436.1 mouse_genomes_project 10 107400075 107400468 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025680.1 MGP_C3HHeJ_G0017171.1 mouse_genomes_project 10 77617012 77678796 + MGP_C3HHeJ_P0025680 Tspear protein_coding protein_coding MGP_C3HHeJ_T0025681.1 MGP_C3HHeJ_G0017171.1 mouse_genomes_project 10 77617077 77684073 + MGP_C3HHeJ_P0025681 Tspear protein_coding protein_coding MGP_C3HHeJ_T0025683.1 MGP_C3HHeJ_G0017171.1 mouse_genomes_project 10 77662441 77665861 + Tspear protein_coding retained_intron MGP_C3HHeJ_T0024673.1 MGP_C3HHeJ_G0016894.1 mouse_genomes_project 10 32189513 32195043 - MGP_C3HHeJ_P0024673 Fam26d protein_coding protein_coding MGP_C3HHeJ_T0006018.1 MGP_C3HHeJ_G0005029.1 mouse_genomes_project 10 41294221 41296261 - Gm26860 lincRNA lincRNA MGP_C3HHeJ_T0025791.1 MGP_C3HHeJ_G0017210.1 mouse_genomes_project 10 79566104 79573263 - MGP_C3HHeJ_P0025791 C2cd4c protein_coding protein_coding MGP_C3HHeJ_T0025792.1 MGP_C3HHeJ_G0017210.1 mouse_genomes_project 10 79566104 79573256 - MGP_C3HHeJ_P0025792 C2cd4c protein_coding protein_coding MGP_C3HHeJ_T0016903.1 MGP_C3HHeJ_G0014898.1 mouse_genomes_project 10 79823409 79826985 - E130317F20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0002951.1 MGP_C3HHeJ_G0002765.1 mouse_genomes_project 10 23457360 23584109 + Gm29571 antisense antisense MGP_C3HHeJ_T0027049.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129196963 129218338 - MGP_C3HHeJ_P0027049 Tsfm protein_coding protein_coding MGP_C3HHeJ_T0027050.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129209963 129218376 - MGP_C3HHeJ_P0027050 Tsfm protein_coding protein_coding MGP_C3HHeJ_T0027051.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129210076 129212725 - Tsfm protein_coding retained_intron MGP_C3HHeJ_T0027052.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129210254 129217908 - Tsfm protein_coding processed_transcript MGP_C3HHeJ_T0027053.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129210536 129218294 - Tsfm protein_coding retained_intron MGP_C3HHeJ_T0027054.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129211862 129218334 - MGP_C3HHeJ_P0027054 Tsfm protein_coding protein_coding MGP_C3HHeJ_T0027055.1 MGP_C3HHeJ_G0017562.1 mouse_genomes_project 10 129216775 129218338 - Tsfm protein_coding retained_intron MGP_C3HHeJ_T0002986.1 MGP_C3HHeJ_G0002792.1 mouse_genomes_project 10 76216780 76233136 - 4930483K19Rik antisense antisense MGP_C3HHeJ_T0027300.1 MGP_C3HHeJ_G0017644.1 mouse_genomes_project 10 131132138 131142524 + MGP_C3HHeJ_P0027300 Mmp19 protein_coding protein_coding MGP_C3HHeJ_T0012278.1 MGP_C3HHeJ_G0010382.1 mouse_genomes_project 10 907143 910419 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006007.1 MGP_C3HHeJ_G0005019.1 mouse_genomes_project 10 19409139 19431070 + Gm5420 lincRNA lincRNA MGP_C3HHeJ_T0006008.1 MGP_C3HHeJ_G0005019.1 mouse_genomes_project 10 19413573 19415200 + Gm5420 lincRNA lincRNA MGP_C3HHeJ_T0002999.1 MGP_C3HHeJ_G0002803.1 mouse_genomes_project 10 81664489 81667781 - Gm15917 antisense antisense MGP_C3HHeJ_T0025317.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68503511 68596075 + MGP_C3HHeJ_P0025317 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025318.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68554807 68643137 + MGP_C3HHeJ_P0025318 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025320.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68560697 68645028 + MGP_C3HHeJ_P0025320 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025321.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68560720 68626770 + Rhobtb1 protein_coding retained_intron MGP_C3HHeJ_T0025322.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68560739 68643235 + MGP_C3HHeJ_P0025322 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025323.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68561147 68613441 + MGP_C3HHeJ_P0025323 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025324.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68561234 68596085 + MGP_C3HHeJ_P0025324 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025325.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68561257 68645017 + MGP_C3HHeJ_P0025325 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025326.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68563365 68642947 + MGP_C3HHeJ_P0025326 Rhobtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025327.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68567438 68596090 + MGP_C3HHeJ_P0025327 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025328.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68612887 68623457 + Rhobtb1 protein_coding processed_transcript MGP_C3HHeJ_T0025329.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68632581 68643235 + MGP_C3HHeJ_P0025329 Rhobtb1 protein_coding protein_coding MGP_C3HHeJ_T0025330.1 MGP_C3HHeJ_G0017093.1 mouse_genomes_project 10 68632694 68640144 + Rhobtb1 protein_coding processed_transcript MGP_C3HHeJ_T0006087.1 MGP_C3HHeJ_G0005073.1 mouse_genomes_project 10 121371840 121387073 + 1700025F24Rik lincRNA lincRNA MGP_C3HHeJ_T0003008.1 MGP_C3HHeJ_G0002810.1 mouse_genomes_project 10 87373841 87375094 + Gm16280 antisense antisense MGP_C3HHeJ_T0000805.1 MGP_C3HHeJ_G0000746.1 mouse_genomes_project 10 120775522 120778239 + TEC TEC MGP_C3HHeJ_T0026254.1 MGP_C3HHeJ_G0017325.1 mouse_genomes_project 10 81581931 81584319 - MGP_C3HHeJ_P0026254 S1pr4 protein_coding protein_coding MGP_C3HHeJ_T0026103.1 MGP_C3HHeJ_G0017288.1 mouse_genomes_project 10 80889854 80906384 + MGP_C3HHeJ_P0026103 Sppl2b protein_coding protein_coding MGP_C3HHeJ_T0027034.1 MGP_C3HHeJ_G0017554.1 mouse_genomes_project 10 125108630 125196665 - MGP_C3HHeJ_P0027034 Mon2 protein_coding protein_coding MGP_C3HHeJ_T0027035.1 MGP_C3HHeJ_G0017554.1 mouse_genomes_project 10 125108636 125197658 - MGP_C3HHeJ_P0027035 Mon2 protein_coding protein_coding MGP_C3HHeJ_T0027036.1 MGP_C3HHeJ_G0017554.1 mouse_genomes_project 10 125108636 125197658 - MGP_C3HHeJ_P0027036 Mon2 protein_coding protein_coding MGP_C3HHeJ_T0027393.1 MGP_C3HHeJ_G0017703.1 mouse_genomes_project 10 132758692 132770520 - MGP_C3HHeJ_P0027393 Neurod4 protein_coding protein_coding MGP_C3HHeJ_T0000786.1 MGP_C3HHeJ_G0000728.1 mouse_genomes_project 10 35397437 35397784 + TEC TEC MGP_C3HHeJ_T0025145.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821347 60861495 - Col13a1 protein_coding processed_transcript MGP_C3HHeJ_T0025146.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821347 60849518 - MGP_C3HHeJ_P0025146 Col13a1 protein_coding protein_coding MGP_C3HHeJ_T0025147.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821347 60969044 - MGP_C3HHeJ_P0025147 Col13a1 protein_coding protein_coding MGP_C3HHeJ_T0025148.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821347 60969009 - MGP_C3HHeJ_P0025148 Col13a1 protein_coding protein_coding MGP_C3HHeJ_T0025149.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821347 60969009 - MGP_C3HHeJ_P0025149 Col13a1 protein_coding protein_coding MGP_C3HHeJ_T0025150.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821817 60968329 - MGP_C3HHeJ_P0025150 Col13a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025151.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60821817 60968572 - MGP_C3HHeJ_P0025151 Col13a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025152.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60831837 60968057 - Col13a1 protein_coding retained_intron MGP_C3HHeJ_T0025153.1 MGP_C3HHeJ_G0017050.1 mouse_genomes_project 10 60831966 60834631 - Col13a1 protein_coding retained_intron MGP_C3HHeJ_T0012330.1 MGP_C3HHeJ_G0010434.1 mouse_genomes_project 10 104748185 104749181 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026023.1 MGP_C3HHeJ_G0017264.1 mouse_genomes_project 10 80392608 80399284 - MGP_C3HHeJ_P0026023 Mbd3 protein_coding protein_coding MGP_C3HHeJ_T0026024.1 MGP_C3HHeJ_G0017264.1 mouse_genomes_project 10 80392609 80399603 - MGP_C3HHeJ_P0026024 Mbd3 protein_coding protein_coding MGP_C3HHeJ_T0026025.1 MGP_C3HHeJ_G0017264.1 mouse_genomes_project 10 80392909 80399475 - MGP_C3HHeJ_P0026025 Mbd3 protein_coding protein_coding MGP_C3HHeJ_T0026026.1 MGP_C3HHeJ_G0017264.1 mouse_genomes_project 10 80393052 80395788 - MGP_C3HHeJ_P0026026 Mbd3 protein_coding protein_coding MGP_C3HHeJ_T0026027.1 MGP_C3HHeJ_G0017264.1 mouse_genomes_project 10 80393963 80395395 - Mbd3 protein_coding processed_transcript MGP_C3HHeJ_T0024593.1 MGP_C3HHeJ_G0016863.1 mouse_genomes_project 10 24185937 24290590 - MGP_C3HHeJ_P0024593 L3mbtl3 protein_coding protein_coding MGP_C3HHeJ_T0024594.1 MGP_C3HHeJ_G0016863.1 mouse_genomes_project 10 24185940 24290590 - MGP_C3HHeJ_P0024594 L3mbtl3 protein_coding protein_coding MGP_C3HHeJ_T0024595.1 MGP_C3HHeJ_G0016863.1 mouse_genomes_project 10 24186921 24291819 - MGP_C3HHeJ_P0024595 L3mbtl3 protein_coding protein_coding MGP_C3HHeJ_T0009560.1 MGP_C3HHeJ_G0007693.1 mouse_genomes_project 10 130879247 130879366 - miRNA miRNA MGP_C3HHeJ_T0026509.1 MGP_C3HHeJ_G0017394.1 mouse_genomes_project 10 89018570 89117677 - MGP_C3HHeJ_P0026509 Mybpc1 protein_coding protein_coding MGP_C3HHeJ_T0026510.1 MGP_C3HHeJ_G0017394.1 mouse_genomes_project 10 89018573 89025124 - Mybpc1 protein_coding retained_intron MGP_C3HHeJ_T0026511.1 MGP_C3HHeJ_G0017394.1 mouse_genomes_project 10 89018630 89117550 - MGP_C3HHeJ_P0026511 Mybpc1 protein_coding protein_coding MGP_C3HHeJ_T0026512.1 MGP_C3HHeJ_G0017394.1 mouse_genomes_project 10 89020543 89040283 - MGP_C3HHeJ_P0026512 Mybpc1 protein_coding protein_coding MGP_C3HHeJ_T0026513.1 MGP_C3HHeJ_G0017394.1 mouse_genomes_project 10 89028127 89040335 - Mybpc1 protein_coding retained_intron MGP_C3HHeJ_T0026514.1 MGP_C3HHeJ_G0017394.1 mouse_genomes_project 10 89028218 89057185 - MGP_C3HHeJ_P0026514 Mybpc1 protein_coding protein_coding MGP_C3HHeJ_T0101612.1 MGP_C3HHeJ_G0039578.1 mouse_genomes_project 10 19873518 19876431 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0026913.1 MGP_C3HHeJ_G0017518.1 mouse_genomes_project 10 119021473 119031417 - MGP_C3HHeJ_P0026913 Yeats4 protein_coding protein_coding MGP_C3HHeJ_T0006077.1 MGP_C3HHeJ_G0005067.1 mouse_genomes_project 10 113033562 113041170 - 4933440J02Rik lincRNA lincRNA MGP_C3HHeJ_T0024766.1 MGP_C3HHeJ_G0016928.1 mouse_genomes_project 10 39282383 39340151 + MGP_C3HHeJ_P0024766 Wasf1 protein_coding protein_coding MGP_C3HHeJ_T0024767.1 MGP_C3HHeJ_G0016928.1 mouse_genomes_project 10 39282735 39340152 + MGP_C3HHeJ_P0024767 Wasf1 protein_coding protein_coding MGP_C3HHeJ_T0002947.1 MGP_C3HHeJ_G0002762.1 mouse_genomes_project 10 12226300 12229417 - B230364G03Rik antisense antisense MGP_C3HHeJ_T0026591.1 MGP_C3HHeJ_G0017408.1 mouse_genomes_project 10 91740727 91763051 + MGP_C3HHeJ_P0026591 Ikbip protein_coding protein_coding MGP_C3HHeJ_T0026592.1 MGP_C3HHeJ_G0017408.1 mouse_genomes_project 10 91740844 91758814 + MGP_C3HHeJ_P0026592 Ikbip protein_coding protein_coding MGP_C3HHeJ_T0026593.1 MGP_C3HHeJ_G0017408.1 mouse_genomes_project 10 91740893 91753392 + Ikbip protein_coding processed_transcript MGP_C3HHeJ_T0026594.1 MGP_C3HHeJ_G0017408.1 mouse_genomes_project 10 91740907 91753975 + Ikbip protein_coding retained_intron MGP_C3HHeJ_T0026595.1 MGP_C3HHeJ_G0017408.1 mouse_genomes_project 10 91756127 91762539 + Ikbip protein_coding processed_transcript MGP_C3HHeJ_T0099933.1 MGP_C3HHeJ_G0038127.1 mouse_genomes_project 10 25437571 25437643 + Gm23353 snoRNA snoRNA MGP_C3HHeJ_T0003005.1 MGP_C3HHeJ_G0002807.1 mouse_genomes_project 10 86524636 86545024 + 4930486F22Rik antisense antisense MGP_C3HHeJ_T0027152.1 MGP_C3HHeJ_G0017591.1 mouse_genomes_project 10 129885483 129906644 + MGP_C3HHeJ_P0027152 Stat6 protein_coding protein_coding MGP_C3HHeJ_T0027153.1 MGP_C3HHeJ_G0017591.1 mouse_genomes_project 10 129885499 129894930 + MGP_C3HHeJ_P0027153 Stat6 protein_coding protein_coding MGP_C3HHeJ_T0027154.1 MGP_C3HHeJ_G0017591.1 mouse_genomes_project 10 129897244 129900190 + Stat6 protein_coding retained_intron MGP_C3HHeJ_T0027155.1 MGP_C3HHeJ_G0017591.1 mouse_genomes_project 10 129902690 129903736 + Stat6 protein_coding retained_intron MGP_C3HHeJ_T0027156.1 MGP_C3HHeJ_G0017591.1 mouse_genomes_project 10 129905086 129905874 + Stat6 protein_coding retained_intron MGP_C3HHeJ_T0027235.1 MGP_C3HHeJ_G0017617.1 mouse_genomes_project 10 130563495 130565650 + MGP_C3HHeJ_P0027235 Apof protein_coding protein_coding MGP_C3HHeJ_T0024454.1 MGP_C3HHeJ_G0016807.1 mouse_genomes_project 10 17287108 17299760 + MGP_C3HHeJ_P0024454 Il22ra2 protein_coding protein_coding MGP_C3HHeJ_T0003037.1 MGP_C3HHeJ_G0002829.1 mouse_genomes_project 10 129833977 129835290 + Gm16217 antisense antisense MGP_C3HHeJ_T0012331.1 MGP_C3HHeJ_G0010435.1 mouse_genomes_project 10 106669210 106670134 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099962.1 MGP_C3HHeJ_G0038156.1 mouse_genomes_project 10 96744940 96745073 + Gm24433 snoRNA snoRNA MGP_C3HHeJ_T0099946.1 MGP_C3HHeJ_G0038140.1 mouse_genomes_project 10 50717238 50717366 + Gm23906 snoRNA snoRNA MGP_C3HHeJ_T0026940.1 MGP_C3HHeJ_G0017526.1 mouse_genomes_project 10 119581482 119600328 - MGP_C3HHeJ_P0026940 protein_coding protein_coding MGP_C3HHeJ_T0006050.1 MGP_C3HHeJ_G0005054.1 mouse_genomes_project 10 90276008 90290875 + 1500026H17Rik lincRNA lincRNA MGP_C3HHeJ_T0009516.1 MGP_C3HHeJ_G0007649.1 mouse_genomes_project 10 80381655 80381738 + Gm22721 miRNA miRNA MGP_C3HHeJ_T0101620.1 MGP_C3HHeJ_G0039586.1 mouse_genomes_project 10 131679180 131679387 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009499.1 MGP_C3HHeJ_G0007632.1 mouse_genomes_project 10 59845173 59845264 + Mir6408 miRNA miRNA MGP_C3HHeJ_T0025420.1 MGP_C3HHeJ_G0017107.1 mouse_genomes_project 10 72127506 72147655 + MGP_C3HHeJ_P0025420 Zwint protein_coding protein_coding MGP_C3HHeJ_T0025421.1 MGP_C3HHeJ_G0017107.1 mouse_genomes_project 10 72127556 72142480 + MGP_C3HHeJ_P0025421 Zwint protein_coding protein_coding MGP_C3HHeJ_T0025422.1 MGP_C3HHeJ_G0017107.1 mouse_genomes_project 10 72127557 72141856 + MGP_C3HHeJ_P0025422 Zwint protein_coding protein_coding MGP_C3HHeJ_T0025423.1 MGP_C3HHeJ_G0017107.1 mouse_genomes_project 10 72128104 72129260 + Zwint protein_coding retained_intron MGP_C3HHeJ_T0025424.1 MGP_C3HHeJ_G0017107.1 mouse_genomes_project 10 72128898 72130050 + Zwint protein_coding retained_intron MGP_C3HHeJ_T0025425.1 MGP_C3HHeJ_G0017107.1 mouse_genomes_project 10 72129252 72147015 + Zwint protein_coding processed_transcript MGP_C3HHeJ_T0027305.1 MGP_C3HHeJ_G0017647.1 mouse_genomes_project 10 131160526 131164680 - MGP_C3HHeJ_P0027305 Ormdl2 protein_coding protein_coding MGP_C3HHeJ_T0099918.1 MGP_C3HHeJ_G0038112.1 mouse_genomes_project 10 5058038 5058159 - Gm24726 snoRNA snoRNA MGP_C3HHeJ_T0099975.1 MGP_C3HHeJ_G0038169.1 mouse_genomes_project 10 122623795 122623855 + Gm24298 snoRNA snoRNA MGP_C3HHeJ_T0025028.1 MGP_C3HHeJ_G0017019.1 mouse_genomes_project 10 58294440 58473274 - MGP_C3HHeJ_P0025028 Mcu protein_coding protein_coding MGP_C3HHeJ_T0025029.1 MGP_C3HHeJ_G0017019.1 mouse_genomes_project 10 58296114 58305716 - MGP_C3HHeJ_P0025029 Mcu protein_coding protein_coding MGP_C3HHeJ_T0025030.1 MGP_C3HHeJ_G0017019.1 mouse_genomes_project 10 58385137 58473257 - MGP_C3HHeJ_P0025030 Mcu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025031.1 MGP_C3HHeJ_G0017019.1 mouse_genomes_project 10 58458191 58473261 - Mcu protein_coding processed_transcript MGP_C3HHeJ_T0025032.1 MGP_C3HHeJ_G0017019.1 mouse_genomes_project 10 58458955 58473237 - Mcu protein_coding processed_transcript MGP_C3HHeJ_T0026125.1 MGP_C3HHeJ_G0017297.1 mouse_genomes_project 10 81111987 81124511 + MGP_C3HHeJ_P0026125 Thop1 protein_coding protein_coding MGP_C3HHeJ_T0026126.1 MGP_C3HHeJ_G0017297.1 mouse_genomes_project 10 81112079 81116829 + Thop1 protein_coding retained_intron MGP_C3HHeJ_T0026127.1 MGP_C3HHeJ_G0017297.1 mouse_genomes_project 10 81112111 81120556 + Thop1 protein_coding processed_transcript MGP_C3HHeJ_T0026128.1 MGP_C3HHeJ_G0017297.1 mouse_genomes_project 10 81115230 81120707 + Thop1 protein_coding retained_intron MGP_C3HHeJ_T0026129.1 MGP_C3HHeJ_G0017297.1 mouse_genomes_project 10 81120819 81122031 + Thop1 protein_coding retained_intron MGP_C3HHeJ_T0024447.1 MGP_C3HHeJ_G0016805.1 mouse_genomes_project 10 17019228 17021291 + MGP_C3HHeJ_P0024447 Olig3 protein_coding protein_coding MGP_C3HHeJ_T0002972.1 MGP_C3HHeJ_G0002780.1 mouse_genomes_project 10 61604408 61605784 + 4933428P19Rik antisense antisense MGP_C3HHeJ_T0026917.1 MGP_C3HHeJ_G0017521.1 mouse_genomes_project 10 119100068 119115936 - MGP_C3HHeJ_P0026917 protein_coding protein_coding MGP_C3HHeJ_T0025539.1 MGP_C3HHeJ_G0017126.1 mouse_genomes_project 10 75366851 75383624 - MGP_C3HHeJ_P0025539 Gstt1 protein_coding protein_coding MGP_C3HHeJ_T0025540.1 MGP_C3HHeJ_G0017126.1 mouse_genomes_project 10 75367022 75381463 - MGP_C3HHeJ_P0025540 Gstt1 protein_coding protein_coding MGP_C3HHeJ_T0025541.1 MGP_C3HHeJ_G0017126.1 mouse_genomes_project 10 75369833 75382771 - MGP_C3HHeJ_P0025541 Gstt1 protein_coding protein_coding MGP_C3HHeJ_T0009553.1 MGP_C3HHeJ_G0007686.1 mouse_genomes_project 10 130373378 130373456 + Mir677 miRNA miRNA MGP_C3HHeJ_T0025294.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66821980 66826752 + MGP_C3HHeJ_P0025294 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0025295.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66822088 66826887 + MGP_C3HHeJ_P0025295 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0025296.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66824374 66828694 + MGP_C3HHeJ_P0025296 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0025297.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66824375 66828694 + MGP_C3HHeJ_P0025297 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0025298.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66824375 66824886 + MGP_C3HHeJ_P0025298 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0025299.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66824435 66826447 + MGP_C3HHeJ_P0025299 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0025300.1 MGP_C3HHeJ_G0017085.1 mouse_genomes_project 10 66825188 66828694 + MGP_C3HHeJ_P0025300 Egr2 protein_coding protein_coding MGP_C3HHeJ_T0099941.1 MGP_C3HHeJ_G0038135.1 mouse_genomes_project 10 38627103 38627316 + Rnu3a snoRNA snoRNA MGP_C3HHeJ_T0025559.1 MGP_C3HHeJ_G0017134.1 mouse_genomes_project 10 75549591 75556181 + MGP_C3HHeJ_P0025559 Vpreb3 protein_coding protein_coding MGP_C3HHeJ_T0025560.1 MGP_C3HHeJ_G0017134.1 mouse_genomes_project 10 75554843 75556201 + MGP_C3HHeJ_P0025560 Vpreb3 protein_coding protein_coding MGP_C3HHeJ_T0026315.1 MGP_C3HHeJ_G0017336.1 mouse_genomes_project 10 82151665 82170976 + MGP_C3HHeJ_P0026315 Zfp873 protein_coding protein_coding MGP_C3HHeJ_T0025257.1 MGP_C3HHeJ_G0017074.1 mouse_genomes_project 10 62181419 62278457 - MGP_C3HHeJ_P0025257 Mypn protein_coding protein_coding MGP_C3HHeJ_T0099937.1 MGP_C3HHeJ_G0038131.1 mouse_genomes_project 10 36486594 36486726 + Gm24889 snoRNA snoRNA MGP_C3HHeJ_T0025020.1 MGP_C3HHeJ_G0017015.1 mouse_genomes_project 10 58061851 58066333 + MGP_C3HHeJ_P0025020 Sowahc protein_coding protein_coding MGP_C3HHeJ_T0009548.1 MGP_C3HHeJ_G0007681.1 mouse_genomes_project 10 125329296 125329392 - Gm27920 miRNA miRNA MGP_C3HHeJ_T0012295.1 MGP_C3HHeJ_G0010399.1 mouse_genomes_project 10 23745921 23746531 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024176.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1630000 1920471 + Esr1 protein_coding processed_transcript MGP_C3HHeJ_T0024177.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1630396 2034933 + MGP_C3HHeJ_P0024177 Esr1 protein_coding protein_coding MGP_C3HHeJ_T0024178.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1630403 1697359 + Esr1 protein_coding retained_intron MGP_C3HHeJ_T0024179.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1630420 1876805 + Esr1 protein_coding retained_intron MGP_C3HHeJ_T0024180.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1630428 2033081 + MGP_C3HHeJ_P0024180 Esr1 protein_coding protein_coding MGP_C3HHeJ_T0024181.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1735144 2031352 + MGP_C3HHeJ_P0024181 Esr1 protein_coding protein_coding MGP_C3HHeJ_T0024182.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1735144 1984921 + MGP_C3HHeJ_P0024182 Esr1 protein_coding protein_coding MGP_C3HHeJ_T0024183.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1737634 1805903 + Esr1 protein_coding processed_transcript MGP_C3HHeJ_T0024184.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1938454 2027258 + Esr1 protein_coding processed_transcript MGP_C3HHeJ_T0024185.1 MGP_C3HHeJ_G0016742.1 mouse_genomes_project 10 1956661 2030984 + Esr1 protein_coding processed_transcript MGP_C3HHeJ_T0101618.1 MGP_C3HHeJ_G0039584.1 mouse_genomes_project 10 107710572 107711038 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012303.1 MGP_C3HHeJ_G0010407.1 mouse_genomes_project 10 41880393 41880748 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025489.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 74910050 75094628 - MGP_C3HHeJ_P0025489 Gucd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025493.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 74982128 75088636 - MGP_C3HHeJ_P0025493 Gucd1 protein_coding protein_coding MGP_C3HHeJ_T0025495.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 75084167 75094551 - MGP_C3HHeJ_P0025495 Gucd1 protein_coding protein_coding MGP_C3HHeJ_T0025496.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 75086152 75094644 - MGP_C3HHeJ_P0025496 Gucd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025497.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 75086186 75088619 - Gucd1 protein_coding retained_intron MGP_C3HHeJ_T0025498.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 75086319 75094525 - MGP_C3HHeJ_P0025498 Gucd1 protein_coding protein_coding MGP_C3HHeJ_T0025499.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 75087071 75095211 - MGP_C3HHeJ_P0025499 Gucd1 protein_coding protein_coding MGP_C3HHeJ_T0025500.1 MGP_C3HHeJ_G0017115.1 mouse_genomes_project 10 75088534 75094615 - MGP_C3HHeJ_P0025500 Gucd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026785.1 MGP_C3HHeJ_G0017469.1 mouse_genomes_project 10 106931830 107016714 - MGP_C3HHeJ_P0026785 Mettl25 protein_coding protein_coding MGP_C3HHeJ_T0026786.1 MGP_C3HHeJ_G0017469.1 mouse_genomes_project 10 106931896 107016716 - MGP_C3HHeJ_P0026786 Mettl25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026787.1 MGP_C3HHeJ_G0017469.1 mouse_genomes_project 10 107001908 107016707 - MGP_C3HHeJ_P0026787 Mettl25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026788.1 MGP_C3HHeJ_G0017469.1 mouse_genomes_project 10 107014540 107016547 - Mettl25 protein_coding processed_transcript MGP_C3HHeJ_T0101617.1 MGP_C3HHeJ_G0039583.1 mouse_genomes_project 10 106684270 106684454 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0026078.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80785756 80826621 + MGP_C3HHeJ_P0026078 Dot1l protein_coding protein_coding MGP_C3HHeJ_T0026079.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80785758 80825547 + MGP_C3HHeJ_P0026079 Dot1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026080.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80786013 80797144 + Dot1l protein_coding retained_intron MGP_C3HHeJ_T0026081.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80808108 80825551 + MGP_C3HHeJ_P0026081 Dot1l protein_coding protein_coding MGP_C3HHeJ_T0026082.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80815715 80816973 + Dot1l protein_coding retained_intron MGP_C3HHeJ_T0026083.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80819614 80825507 + MGP_C3HHeJ_P0026083 Dot1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026084.1 MGP_C3HHeJ_G0017280.1 mouse_genomes_project 10 80822613 80824978 + MGP_C3HHeJ_P0026084 Dot1l protein_coding protein_coding MGP_C3HHeJ_T0011185.1 MGP_C3HHeJ_G0009318.1 mouse_genomes_project 10 92787537 92787800 - Gm27588 misc_RNA misc_RNA MGP_C3HHeJ_T0027166.1 MGP_C3HHeJ_G0017594.1 mouse_genomes_project 10 129952623 129969225 + MGP_C3HHeJ_P0027166 Myo1a protein_coding protein_coding MGP_C3HHeJ_T0027167.1 MGP_C3HHeJ_G0017594.1 mouse_genomes_project 10 129952709 129981218 + MGP_C3HHeJ_P0027167 Myo1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0026147.1 MGP_C3HHeJ_G0017301.1 mouse_genomes_project 10 81204816 81219402 - MGP_C3HHeJ_P0026147 Pias4 protein_coding protein_coding MGP_C3HHeJ_T0026148.1 MGP_C3HHeJ_G0017301.1 mouse_genomes_project 10 81205785 81207675 - Pias4 protein_coding retained_intron MGP_C3HHeJ_T0026149.1 MGP_C3HHeJ_G0017301.1 mouse_genomes_project 10 81207052 81209562 - Pias4 protein_coding retained_intron MGP_C3HHeJ_T0026150.1 MGP_C3HHeJ_G0017301.1 mouse_genomes_project 10 81207222 81219200 - MGP_C3HHeJ_P0026150 Pias4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026151.1 MGP_C3HHeJ_G0017301.1 mouse_genomes_project 10 81207409 81208810 - MGP_C3HHeJ_P0026151 Pias4 protein_coding protein_coding MGP_C3HHeJ_T0026152.1 MGP_C3HHeJ_G0017301.1 mouse_genomes_project 10 81214521 81219193 - Pias4 protein_coding retained_intron MGP_C3HHeJ_T0097836.1 MGP_C3HHeJ_G0036048.1 mouse_genomes_project 10 58061851 58066330 + pseudogene pseudogene MGP_C3HHeJ_T0026413.1 MGP_C3HHeJ_G0017369.1 mouse_genomes_project 10 86321795 86342663 - MGP_C3HHeJ_P0026413 Prdm4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026414.1 MGP_C3HHeJ_G0017369.1 mouse_genomes_project 10 86321795 86342693 - MGP_C3HHeJ_P0026414 Prdm4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026415.1 MGP_C3HHeJ_G0017369.1 mouse_genomes_project 10 86321795 86346577 - MGP_C3HHeJ_P0026415 Prdm4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026416.1 MGP_C3HHeJ_G0017369.1 mouse_genomes_project 10 86321804 86346668 - MGP_C3HHeJ_P0026416 Prdm4 protein_coding protein_coding MGP_C3HHeJ_T0025866.1 MGP_C3HHeJ_G0017229.1 mouse_genomes_project 10 79862031 79863939 + MGP_C3HHeJ_P0025866 Elane protein_coding protein_coding MGP_C3HHeJ_T0016894.1 MGP_C3HHeJ_G0014895.1 mouse_genomes_project 10 40005696 40014157 + 5730435O14Rik processed_transcript antisense MGP_C3HHeJ_T0016895.1 MGP_C3HHeJ_G0014895.1 mouse_genomes_project 10 40013244 40014146 + 5730435O14Rik processed_transcript retained_intron MGP_C3HHeJ_T0101613.1 MGP_C3HHeJ_G0039579.1 mouse_genomes_project 10 21881644 21882177 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0025313.1 MGP_C3HHeJ_G0017090.1 mouse_genomes_project 10 67403539 67591373 - MGP_C3HHeJ_P0025313 Arid5b protein_coding protein_coding MGP_C3HHeJ_T0026789.1 MGP_C3HHeJ_G0017470.1 mouse_genomes_project 10 107016402 107023168 + Ccdc59 protein_coding retained_intron MGP_C3HHeJ_T0026790.1 MGP_C3HHeJ_G0017470.1 mouse_genomes_project 10 107016402 107023168 + MGP_C3HHeJ_P0026790 Ccdc59 protein_coding protein_coding MGP_C3HHeJ_T0026791.1 MGP_C3HHeJ_G0017470.1 mouse_genomes_project 10 107016839 107018318 + Ccdc59 protein_coding retained_intron MGP_C3HHeJ_T0027179.1 MGP_C3HHeJ_G0017604.1 mouse_genomes_project 10 130134394 130138952 - MGP_C3HHeJ_P0027179 Rdh7 protein_coding protein_coding MGP_C3HHeJ_T0026209.1 MGP_C3HHeJ_G0017317.1 mouse_genomes_project 10 81436505 81445240 + MGP_C3HHeJ_P0026209 Mfsd12 protein_coding protein_coding MGP_C3HHeJ_T0026210.1 MGP_C3HHeJ_G0017317.1 mouse_genomes_project 10 81436566 81440247 + MGP_C3HHeJ_P0026210 Mfsd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012316.1 MGP_C3HHeJ_G0010420.1 mouse_genomes_project 10 72694443 72695515 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024462.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17602227 17819462 + MGP_C3HHeJ_P0024462 Map3k5 protein_coding protein_coding MGP_C3HHeJ_T0024463.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17602281 17818378 + MGP_C3HHeJ_P0024463 Map3k5 protein_coding protein_coding MGP_C3HHeJ_T0024464.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17602976 17773696 + MGP_C3HHeJ_P0024464 Map3k5 protein_coding protein_coding MGP_C3HHeJ_T0024465.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17618796 17695340 + MGP_C3HHeJ_P0024465 Map3k5 protein_coding protein_coding MGP_C3HHeJ_T0024466.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17773062 17778955 + Map3k5 protein_coding processed_transcript MGP_C3HHeJ_T0024467.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17801812 17804697 + Map3k5 protein_coding retained_intron MGP_C3HHeJ_T0024468.1 MGP_C3HHeJ_G0016812.1 mouse_genomes_project 10 17804696 17815261 + Map3k5 protein_coding retained_intron MGP_C3HHeJ_T0025135.1 MGP_C3HHeJ_G0017046.1 mouse_genomes_project 10 60656349 60669335 + MGP_C3HHeJ_P0025135 Sar1a protein_coding protein_coding MGP_C3HHeJ_T0025946.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80136867 80146958 + MGP_C3HHeJ_P0025946 Midn protein_coding protein_coding MGP_C3HHeJ_T0025947.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80136867 80146959 + MGP_C3HHeJ_P0025947 Midn protein_coding protein_coding MGP_C3HHeJ_T0025948.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80137697 80138864 + MGP_C3HHeJ_P0025948 Midn protein_coding protein_coding MGP_C3HHeJ_T0025949.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80138471 80142278 + Midn protein_coding processed_transcript MGP_C3HHeJ_T0025950.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80139051 80142459 + MGP_C3HHeJ_P0025950 Midn protein_coding protein_coding MGP_C3HHeJ_T0025951.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80139748 80143063 + MGP_C3HHeJ_P0025951 Midn protein_coding protein_coding MGP_C3HHeJ_T0025952.1 MGP_C3HHeJ_G0017248.1 mouse_genomes_project 10 80139832 80142287 + MGP_C3HHeJ_P0025952 Midn protein_coding protein_coding MGP_C3HHeJ_T0011192.1 MGP_C3HHeJ_G0009325.1 mouse_genomes_project 10 110417987 110418265 - Gm22097 misc_RNA misc_RNA MGP_C3HHeJ_T0025582.1 MGP_C3HHeJ_G0017142.1 mouse_genomes_project 10 76012548 76107304 - MGP_C3HHeJ_P0025582 Pcnt protein_coding protein_coding MGP_C3HHeJ_T0025583.1 MGP_C3HHeJ_G0017142.1 mouse_genomes_project 10 76012552 76107010 - MGP_C3HHeJ_P0025583 Pcnt protein_coding unknown_likely_coding MGP_C3HHeJ_T0099944.1 MGP_C3HHeJ_G0038138.1 mouse_genomes_project 10 45341620 45341751 - Gm23481 snoRNA snoRNA MGP_C3HHeJ_T0016881.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37963069 38078308 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016882.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37963071 38078307 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016883.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37964282 38078117 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016884.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37964312 38078150 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016885.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37964355 38078302 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016886.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37964371 38078115 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016887.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37964633 38078077 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016888.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37982148 37989730 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016889.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37982240 38078283 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016890.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37998195 38074482 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016891.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 37998763 38078307 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016892.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 38023963 38078307 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016893.1 MGP_C3HHeJ_G0014894.1 mouse_genomes_project 10 38067713 38078268 - E130307A14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0027004.1 MGP_C3HHeJ_G0017546.1 mouse_genomes_project 10 123633482 123672443 - MGP_C3HHeJ_P0027004 Tbk1 protein_coding protein_coding MGP_C3HHeJ_T0000782.1 MGP_C3HHeJ_G0000724.1 mouse_genomes_project 10 11757034 11757860 + TEC TEC MGP_C3HHeJ_T0024970.1 MGP_C3HHeJ_G0016998.1 mouse_genomes_project 10 56575415 56602129 + MGP_C3HHeJ_P0024970 Hsf2 protein_coding protein_coding MGP_C3HHeJ_T0016898.1 MGP_C3HHeJ_G0014897.1 mouse_genomes_project 10 69600981 69612667 + Mrln processed_transcript lincRNA MGP_C3HHeJ_T0016899.1 MGP_C3HHeJ_G0014897.1 mouse_genomes_project 10 69600984 69617096 + Mrln processed_transcript lincRNA MGP_C3HHeJ_T0016900.1 MGP_C3HHeJ_G0014897.1 mouse_genomes_project 10 69601027 69616965 + Mrln processed_transcript lincRNA MGP_C3HHeJ_T0016901.1 MGP_C3HHeJ_G0014897.1 mouse_genomes_project 10 69601042 69607847 + Mrln processed_transcript lincRNA MGP_C3HHeJ_T0016902.1 MGP_C3HHeJ_G0014897.1 mouse_genomes_project 10 69614278 69617095 + Mrln processed_transcript retained_intron MGP_C3HHeJ_T0025207.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61562399 61605155 - MGP_C3HHeJ_P0025207 Kif1bp protein_coding protein_coding MGP_C3HHeJ_T0025208.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61563428 61596647 - MGP_C3HHeJ_P0025208 Kif1bp protein_coding protein_coding MGP_C3HHeJ_T0025209.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61584907 61605092 - MGP_C3HHeJ_P0025209 Kif1bp protein_coding protein_coding MGP_C3HHeJ_T0025210.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61584981 61592558 - MGP_C3HHeJ_P0025210 Kif1bp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025211.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61586037 61590015 - Kif1bp protein_coding retained_intron MGP_C3HHeJ_T0025212.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61592307 61596635 - Kif1bp protein_coding retained_intron MGP_C3HHeJ_T0025213.1 MGP_C3HHeJ_G0017062.1 mouse_genomes_project 10 61596281 61605109 - Kif1bp protein_coding retained_intron MGP_C3HHeJ_T0025769.1 MGP_C3HHeJ_G0017201.1 mouse_genomes_project 10 78913339 78914419 + MGP_C3HHeJ_P0025769 Olfr57 protein_coding protein_coding MGP_C3HHeJ_T0026292.1 MGP_C3HHeJ_G0017331.1 mouse_genomes_project 10 81698070 81714081 + BC025920 protein_coding processed_transcript MGP_C3HHeJ_T0026293.1 MGP_C3HHeJ_G0017331.1 mouse_genomes_project 10 81698103 81701637 + MGP_C3HHeJ_P0026293 BC025920 protein_coding protein_coding MGP_C3HHeJ_T0026294.1 MGP_C3HHeJ_G0017331.1 mouse_genomes_project 10 81698683 81701346 + MGP_C3HHeJ_P0026294 BC025920 protein_coding protein_coding MGP_C3HHeJ_T0026295.1 MGP_C3HHeJ_G0017331.1 mouse_genomes_project 10 81698683 81701346 + MGP_C3HHeJ_P0026295 BC025920 protein_coding protein_coding MGP_C3HHeJ_T0026296.1 MGP_C3HHeJ_G0017331.1 mouse_genomes_project 10 81698825 81701610 + MGP_C3HHeJ_P0026296 BC025920 protein_coding protein_coding MGP_C3HHeJ_T0026086.1 MGP_C3HHeJ_G0017282.1 mouse_genomes_project 10 80829357 80836084 + MGP_C3HHeJ_P0026086 Sf3a2 protein_coding protein_coding MGP_C3HHeJ_T0026087.1 MGP_C3HHeJ_G0017282.1 mouse_genomes_project 10 80829891 80835167 + MGP_C3HHeJ_P0026087 Sf3a2 protein_coding protein_coding MGP_C3HHeJ_T0026088.1 MGP_C3HHeJ_G0017282.1 mouse_genomes_project 10 80830128 80833561 + MGP_C3HHeJ_P0026088 Sf3a2 protein_coding protein_coding MGP_C3HHeJ_T0026089.1 MGP_C3HHeJ_G0017282.1 mouse_genomes_project 10 80833659 80835177 + Sf3a2 protein_coding retained_intron MGP_C3HHeJ_T0027389.1 MGP_C3HHeJ_G0017699.1 mouse_genomes_project 10 132588449 132589401 - MGP_C3HHeJ_P0027389 Olfr824 protein_coding protein_coding MGP_C3HHeJ_T0011175.1 MGP_C3HHeJ_G0009308.1 mouse_genomes_project 10 40803426 40803671 + Gm23533 misc_RNA misc_RNA MGP_C3HHeJ_T0024731.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38078470 38221603 + MGP_C3HHeJ_P0024731 Rev3l protein_coding protein_coding MGP_C3HHeJ_T0024732.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38078479 38221560 + MGP_C3HHeJ_P0024732 Rev3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024733.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38078716 38221598 + MGP_C3HHeJ_P0024733 Rev3l protein_coding protein_coding MGP_C3HHeJ_T0024734.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38171040 38221600 + MGP_C3HHeJ_P0024734 Rev3l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024735.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38174183 38189199 + Rev3l protein_coding retained_intron MGP_C3HHeJ_T0024736.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38205302 38209348 + Rev3l protein_coding retained_intron MGP_C3HHeJ_T0024737.1 MGP_C3HHeJ_G0016913.1 mouse_genomes_project 10 38213500 38220880 + Rev3l protein_coding retained_intron MGP_C3HHeJ_T0011183.1 MGP_C3HHeJ_G0009316.1 mouse_genomes_project 10 92760562 92760755 - Gm27999 misc_RNA misc_RNA MGP_C3HHeJ_T0006019.1 MGP_C3HHeJ_G0005030.1 mouse_genomes_project 10 52981862 52988575 + Gm16998 lincRNA lincRNA MGP_C3HHeJ_T0025524.1 MGP_C3HHeJ_G0017120.1 mouse_genomes_project 10 75167081 75195615 + MGP_C3HHeJ_P0025524 Ggt5 protein_coding protein_coding MGP_C3HHeJ_T0025525.1 MGP_C3HHeJ_G0017120.1 mouse_genomes_project 10 75167122 75182990 + MGP_C3HHeJ_P0025525 Ggt5 protein_coding protein_coding MGP_C3HHeJ_T0025526.1 MGP_C3HHeJ_G0017120.1 mouse_genomes_project 10 75167533 75182992 + MGP_C3HHeJ_P0025526 Ggt5 protein_coding protein_coding MGP_C3HHeJ_T0025527.1 MGP_C3HHeJ_G0017120.1 mouse_genomes_project 10 75181669 75188183 + Ggt5 protein_coding processed_transcript MGP_C3HHeJ_T0099934.1 MGP_C3HHeJ_G0038128.1 mouse_genomes_project 10 27423750 27423878 + Gm24286 snoRNA snoRNA MGP_C3HHeJ_T0026400.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 85781010 86054166 + MGP_C3HHeJ_P0026400 Btbd11 protein_coding protein_coding MGP_C3HHeJ_T0026401.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 85781023 86032990 + MGP_C3HHeJ_P0026401 Btbd11 protein_coding protein_coding MGP_C3HHeJ_T0026402.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 85988200 86054166 + MGP_C3HHeJ_P0026402 Btbd11 protein_coding protein_coding MGP_C3HHeJ_T0026403.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 85988210 85995827 + Btbd11 protein_coding processed_transcript MGP_C3HHeJ_T0026404.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 86021906 86034029 + Btbd11 protein_coding retained_intron MGP_C3HHeJ_T0026405.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 86031968 86054163 + Btbd11 protein_coding processed_transcript MGP_C3HHeJ_T0026406.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 86037660 86054166 + Btbd11 protein_coding retained_intron MGP_C3HHeJ_T0026407.1 MGP_C3HHeJ_G0017366.1 mouse_genomes_project 10 86046615 86052134 + Btbd11 protein_coding retained_intron MGP_C3HHeJ_T0024948.1 MGP_C3HHeJ_G0016989.1 mouse_genomes_project 10 52369231 52371554 + MGP_C3HHeJ_P0024948 protein_coding protein_coding MGP_C3HHeJ_T0026141.1 MGP_C3HHeJ_G0017300.1 mouse_genomes_project 10 81185336 81196043 + MGP_C3HHeJ_P0026141 Zbtb7a protein_coding protein_coding MGP_C3HHeJ_T0026142.1 MGP_C3HHeJ_G0017300.1 mouse_genomes_project 10 81186387 81203773 + MGP_C3HHeJ_P0026142 Zbtb7a protein_coding protein_coding MGP_C3HHeJ_T0026143.1 MGP_C3HHeJ_G0017300.1 mouse_genomes_project 10 81186665 81199990 + MGP_C3HHeJ_P0026143 Zbtb7a protein_coding protein_coding MGP_C3HHeJ_T0026144.1 MGP_C3HHeJ_G0017300.1 mouse_genomes_project 10 81186682 81195654 + MGP_C3HHeJ_P0026144 Zbtb7a protein_coding protein_coding MGP_C3HHeJ_T0026145.1 MGP_C3HHeJ_G0017300.1 mouse_genomes_project 10 81186694 81204546 + MGP_C3HHeJ_P0026145 Zbtb7a protein_coding protein_coding MGP_C3HHeJ_T0026146.1 MGP_C3HHeJ_G0017300.1 mouse_genomes_project 10 81188288 81200005 + MGP_C3HHeJ_P0026146 Zbtb7a protein_coding protein_coding MGP_C3HHeJ_T0024144.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 688777 899540 + Plekhg1 protein_coding retained_intron MGP_C3HHeJ_T0024145.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 689837 899523 + Plekhg1 protein_coding retained_intron MGP_C3HHeJ_T0024146.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 825388 932648 + MGP_C3HHeJ_P0024146 Plekhg1 protein_coding protein_coding MGP_C3HHeJ_T0024147.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 831437 929893 + MGP_C3HHeJ_P0024147 Plekhg1 protein_coding protein_coding MGP_C3HHeJ_T0024148.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 864355 878639 + Plekhg1 protein_coding retained_intron MGP_C3HHeJ_T0024149.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 864359 932642 + MGP_C3HHeJ_P0024149 Plekhg1 protein_coding protein_coding MGP_C3HHeJ_T0024150.1 MGP_C3HHeJ_G0016735.1 mouse_genomes_project 10 921211 928870 + MGP_C3HHeJ_P0024150 Plekhg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009489.1 MGP_C3HHeJ_G0007622.1 mouse_genomes_project 10 26205028 26205111 - Gm22370 miRNA miRNA MGP_C3HHeJ_T0025244.1 MGP_C3HHeJ_G0017071.1 mouse_genomes_project 10 62081764 62091765 - MGP_C3HHeJ_P0025244 Hnrnph3 protein_coding protein_coding MGP_C3HHeJ_T0025245.1 MGP_C3HHeJ_G0017071.1 mouse_genomes_project 10 62081764 62091765 - MGP_C3HHeJ_P0025245 Hnrnph3 protein_coding protein_coding MGP_C3HHeJ_T0025246.1 MGP_C3HHeJ_G0017071.1 mouse_genomes_project 10 62082528 62092088 - MGP_C3HHeJ_P0025246 Hnrnph3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025247.1 MGP_C3HHeJ_G0017071.1 mouse_genomes_project 10 62082531 62083269 - Hnrnph3 protein_coding retained_intron MGP_C3HHeJ_T0025248.1 MGP_C3HHeJ_G0017071.1 mouse_genomes_project 10 62083518 62085185 - Hnrnph3 protein_coding retained_intron MGP_C3HHeJ_T0025249.1 MGP_C3HHeJ_G0017071.1 mouse_genomes_project 10 62084907 62091718 - MGP_C3HHeJ_P0025249 Hnrnph3 protein_coding protein_coding MGP_C3HHeJ_T0009508.1 MGP_C3HHeJ_G0007641.1 mouse_genomes_project 10 78189832 78189890 - Mir7659 miRNA miRNA MGP_C3HHeJ_T0024665.1 MGP_C3HHeJ_G0016888.1 mouse_genomes_project 10 32003236 32019009 + MGP_C3HHeJ_P0024665 Sult3a1 protein_coding protein_coding MGP_C3HHeJ_T0012342.1 MGP_C3HHeJ_G0010446.1 mouse_genomes_project 10 132616964 132628490 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099963.1 MGP_C3HHeJ_G0038157.1 mouse_genomes_project 10 98676881 98677009 - Gm25658 snoRNA snoRNA MGP_C3HHeJ_T0027326.1 MGP_C3HHeJ_G0017657.1 mouse_genomes_project 10 131532376 131537573 - MGP_C3HHeJ_P0027326 Olfr770 protein_coding protein_coding MGP_C3HHeJ_T0027327.1 MGP_C3HHeJ_G0017657.1 mouse_genomes_project 10 131532376 131533312 - MGP_C3HHeJ_P0027327 Olfr770 protein_coding protein_coding MGP_C3HHeJ_T0027328.1 MGP_C3HHeJ_G0017657.1 mouse_genomes_project 10 131532922 131538315 - MGP_C3HHeJ_P0027328 Olfr770 protein_coding protein_coding MGP_C3HHeJ_T0027329.1 MGP_C3HHeJ_G0017657.1 mouse_genomes_project 10 131532989 131538319 - MGP_C3HHeJ_P0027329 Olfr770 protein_coding protein_coding MGP_C3HHeJ_T0025546.1 MGP_C3HHeJ_G0017130.1 mouse_genomes_project 10 75498023 75500567 + MGP_C3HHeJ_P0025546 Derl3 protein_coding protein_coding MGP_C3HHeJ_T0025467.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74499679 74578568 - MGP_C3HHeJ_P0025467 Rsph14 protein_coding protein_coding MGP_C3HHeJ_T0025468.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74499679 74578556 - MGP_C3HHeJ_P0025468 Rsph14 protein_coding protein_coding MGP_C3HHeJ_T0025469.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74499679 74578589 - MGP_C3HHeJ_P0025469 Rsph14 protein_coding protein_coding MGP_C3HHeJ_T0025470.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74501908 74578556 - MGP_C3HHeJ_P0025470 Rsph14 protein_coding protein_coding MGP_C3HHeJ_T0025471.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74503906 74578565 - MGP_C3HHeJ_P0025471 Rsph14 protein_coding protein_coding MGP_C3HHeJ_T0025475.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74566753 74578531 - MGP_C3HHeJ_P0025475 Rsph14 protein_coding protein_coding MGP_C3HHeJ_T0025476.1 MGP_C3HHeJ_G0017109.1 mouse_genomes_project 10 74570495 74578589 - Rsph14 protein_coding retained_intron MGP_C3HHeJ_T0025280.1 MGP_C3HHeJ_G0017082.1 mouse_genomes_project 10 66256998 66353915 - MGP_C3HHeJ_P0025280 Reep3 protein_coding protein_coding MGP_C3HHeJ_T0025281.1 MGP_C3HHeJ_G0017082.1 mouse_genomes_project 10 66285227 66353748 - MGP_C3HHeJ_P0025281 Reep3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026909.1 MGP_C3HHeJ_G0017514.1 mouse_genomes_project 10 118753208 118792656 + MGP_C3HHeJ_P0026909 Best3 protein_coding protein_coding MGP_C3HHeJ_T0024940.1 MGP_C3HHeJ_G0016984.1 mouse_genomes_project 10 51239849 51251746 + MGP_C3HHeJ_P0024940 Nepn protein_coding protein_coding MGP_C3HHeJ_T0024941.1 MGP_C3HHeJ_G0016984.1 mouse_genomes_project 10 51242493 51255397 + MGP_C3HHeJ_P0024941 Nepn protein_coding protein_coding MGP_C3HHeJ_T0009551.1 MGP_C3HHeJ_G0007684.1 mouse_genomes_project 10 129178497 129178581 + Mir26a-2 miRNA miRNA MGP_C3HHeJ_T0026314.1 MGP_C3HHeJ_G0017335.1 mouse_genomes_project 10 82016284 82017806 - MGP_C3HHeJ_P0026314 protein_coding protein_coding MGP_C3HHeJ_T0027217.1 MGP_C3HHeJ_G0017613.1 mouse_genomes_project 10 130502773 130504662 - MGP_C3HHeJ_P0027217 Spryd4 protein_coding protein_coding MGP_C3HHeJ_T0024625.1 MGP_C3HHeJ_G0016872.1 mouse_genomes_project 10 27336770 27374199 + MGP_C3HHeJ_P0024625 Echdc1 protein_coding protein_coding MGP_C3HHeJ_T0024626.1 MGP_C3HHeJ_G0016872.1 mouse_genomes_project 10 27336885 27372983 + MGP_C3HHeJ_P0024626 Echdc1 protein_coding protein_coding MGP_C3HHeJ_T0024627.1 MGP_C3HHeJ_G0016872.1 mouse_genomes_project 10 27337104 27375300 + MGP_C3HHeJ_P0024627 Echdc1 protein_coding protein_coding MGP_C3HHeJ_T0024628.1 MGP_C3HHeJ_G0016872.1 mouse_genomes_project 10 27337267 27363224 + Echdc1 protein_coding processed_transcript MGP_C3HHeJ_T0006042.1 MGP_C3HHeJ_G0005047.1 mouse_genomes_project 10 80705709 80711932 + Gm26541 lincRNA lincRNA MGP_C3HHeJ_T0006082.1 MGP_C3HHeJ_G0005071.1 mouse_genomes_project 10 118728076 118730766 + D630029K05Rik lincRNA lincRNA MGP_C3HHeJ_T0006083.1 MGP_C3HHeJ_G0005071.1 mouse_genomes_project 10 118728109 118730952 + D630029K05Rik lincRNA lincRNA MGP_C3HHeJ_T0006084.1 MGP_C3HHeJ_G0005071.1 mouse_genomes_project 10 118729124 118731082 + D630029K05Rik lincRNA lincRNA MGP_C3HHeJ_T0006085.1 MGP_C3HHeJ_G0005071.1 mouse_genomes_project 10 118729643 118732475 + D630029K05Rik lincRNA lincRNA MGP_C3HHeJ_T0027324.1 MGP_C3HHeJ_G0017655.1 mouse_genomes_project 10 131490034 131490973 - MGP_C3HHeJ_P0027324 Olfr768 protein_coding protein_coding MGP_C3HHeJ_T0026417.1 MGP_C3HHeJ_G0017370.1 mouse_genomes_project 10 86357376 86359380 + MGP_C3HHeJ_P0026417 Ascl4 protein_coding protein_coding MGP_C3HHeJ_T0026418.1 MGP_C3HHeJ_G0017370.1 mouse_genomes_project 10 86358469 86375791 + MGP_C3HHeJ_P0026418 Ascl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025199.1 MGP_C3HHeJ_G0017060.1 mouse_genomes_project 10 61476736 61509695 - MGP_C3HHeJ_P0025199 Vps26a protein_coding protein_coding MGP_C3HHeJ_T0025200.1 MGP_C3HHeJ_G0017060.1 mouse_genomes_project 10 61476736 61509488 - MGP_C3HHeJ_P0025200 Vps26a protein_coding protein_coding MGP_C3HHeJ_T0027113.1 MGP_C3HHeJ_G0017584.1 mouse_genomes_project 10 129575483 129591001 - MGP_C3HHeJ_P0027113 Inhbc protein_coding protein_coding MGP_C3HHeJ_T0009540.1 MGP_C3HHeJ_G0007673.1 mouse_genomes_project 10 109722863 109722957 + Gm25591 miRNA miRNA MGP_C3HHeJ_T0009505.1 MGP_C3HHeJ_G0007638.1 mouse_genomes_project 10 75619666 75619758 + Mir6409 miRNA miRNA MGP_C3HHeJ_T0009510.1 MGP_C3HHeJ_G0007643.1 mouse_genomes_project 10 78287687 78287791 + Mir6410 miRNA miRNA MGP_C3HHeJ_T0026977.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122204769 122206395 + Tmbim4 protein_coding processed_transcript MGP_C3HHeJ_T0026978.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122204791 122206388 + Tmbim4 protein_coding processed_transcript MGP_C3HHeJ_T0026979.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122204837 122221033 + MGP_C3HHeJ_P0026979 Tmbim4 protein_coding protein_coding MGP_C3HHeJ_T0026980.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122205830 122206388 + Tmbim4 protein_coding processed_transcript MGP_C3HHeJ_T0026981.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122211901 122228671 + MGP_C3HHeJ_P0026981 Tmbim4 protein_coding protein_coding MGP_C3HHeJ_T0026982.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122211931 122221188 + MGP_C3HHeJ_P0026982 Tmbim4 protein_coding protein_coding MGP_C3HHeJ_T0026983.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122211944 122228593 + MGP_C3HHeJ_P0026983 Tmbim4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026984.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122224835 122228493 + Tmbim4 protein_coding retained_intron MGP_C3HHeJ_T0026985.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122225966 122228026 + Tmbim4 protein_coding retained_intron MGP_C3HHeJ_T0026986.1 MGP_C3HHeJ_G0017536.1 mouse_genomes_project 10 122225966 122228671 + Tmbim4 protein_coding retained_intron MGP_C3HHeJ_T0024550.1 MGP_C3HHeJ_G0016848.1 mouse_genomes_project 10 21971803 21975630 - MGP_C3HHeJ_P0024550 Taar8a protein_coding protein_coding MGP_C3HHeJ_T0024516.1 MGP_C3HHeJ_G0016825.1 mouse_genomes_project 10 19825097 19827752 - MGP_C3HHeJ_P0024516 protein_coding protein_coding MGP_C3HHeJ_T0026395.1 MGP_C3HHeJ_G0017361.1 mouse_genomes_project 10 85471584 85477061 - MGP_C3HHeJ_P0026395 Fhl4 protein_coding protein_coding MGP_C3HHeJ_T0024866.1 MGP_C3HHeJ_G0016951.1 mouse_genomes_project 10 41729593 41731450 + MGP_C3HHeJ_P0024866 9030612E09Rik protein_coding protein_coding MGP_C3HHeJ_T0026973.1 MGP_C3HHeJ_G0017535.1 mouse_genomes_project 10 122142742 122204678 - MGP_C3HHeJ_P0026973 Irak3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026974.1 MGP_C3HHeJ_G0017535.1 mouse_genomes_project 10 122143294 122204639 - MGP_C3HHeJ_P0026974 Irak3 protein_coding protein_coding MGP_C3HHeJ_T0026975.1 MGP_C3HHeJ_G0017535.1 mouse_genomes_project 10 122161153 122173147 - Irak3 protein_coding processed_transcript MGP_C3HHeJ_T0026976.1 MGP_C3HHeJ_G0017535.1 mouse_genomes_project 10 122167733 122204767 - Irak3 protein_coding retained_intron MGP_C3HHeJ_T0024761.1 MGP_C3HHeJ_G0016924.1 mouse_genomes_project 10 38952844 38987883 + MGP_C3HHeJ_P0024761 Slc22a16 protein_coding protein_coding MGP_C3HHeJ_T0024762.1 MGP_C3HHeJ_G0016924.1 mouse_genomes_project 10 38953121 38987879 + MGP_C3HHeJ_P0024762 Slc22a16 protein_coding protein_coding MGP_C3HHeJ_T0003009.1 MGP_C3HHeJ_G0002811.1 mouse_genomes_project 10 87437427 87498457 + Gm16271 antisense antisense MGP_C3HHeJ_T0027219.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130525246 130545931 + MGP_C3HHeJ_P0027219 Timeless protein_coding protein_coding MGP_C3HHeJ_T0027220.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130525261 130545922 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0027221.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130525270 130545842 + MGP_C3HHeJ_P0027221 Timeless protein_coding protein_coding MGP_C3HHeJ_T0027222.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130525272 130539098 + MGP_C3HHeJ_P0027222 Timeless protein_coding protein_coding MGP_C3HHeJ_T0027223.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130525296 130534674 + MGP_C3HHeJ_P0027223 Timeless protein_coding protein_coding MGP_C3HHeJ_T0027224.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130525315 130545931 + MGP_C3HHeJ_P0027224 Timeless protein_coding protein_coding MGP_C3HHeJ_T0027225.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130531092 130545931 + MGP_C3HHeJ_P0027225 Timeless protein_coding protein_coding MGP_C3HHeJ_T0027226.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130533399 130534614 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0027227.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130535332 130536004 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0027228.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130535401 130536936 + Timeless protein_coding processed_transcript MGP_C3HHeJ_T0027229.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130535622 130536688 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0027230.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130540268 130541036 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0027231.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130540323 130545929 + Timeless protein_coding processed_transcript MGP_C3HHeJ_T0027232.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130542201 130542849 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0027233.1 MGP_C3HHeJ_G0017615.1 mouse_genomes_project 10 130542607 130543361 + Timeless protein_coding retained_intron MGP_C3HHeJ_T0002946.1 MGP_C3HHeJ_G0002761.1 mouse_genomes_project 10 12123506 12127544 + Gm16234 antisense antisense MGP_C3HHeJ_T0025386.1 MGP_C3HHeJ_G0017098.1 mouse_genomes_project 10 69646397 69687416 + MGP_C3HHeJ_P0025386 Slc16a9 protein_coding protein_coding MGP_C3HHeJ_T0025387.1 MGP_C3HHeJ_G0017098.1 mouse_genomes_project 10 69668440 69685540 + Slc16a9 protein_coding retained_intron MGP_C3HHeJ_T0026016.1 MGP_C3HHeJ_G0017262.1 mouse_genomes_project 10 80355086 80364115 + MGP_C3HHeJ_P0026016 Plk5 protein_coding protein_coding MGP_C3HHeJ_T0026017.1 MGP_C3HHeJ_G0017262.1 mouse_genomes_project 10 80355086 80364115 + MGP_C3HHeJ_P0026017 Plk5 protein_coding protein_coding MGP_C3HHeJ_T0026018.1 MGP_C3HHeJ_G0017262.1 mouse_genomes_project 10 80356604 80359153 + Plk5 protein_coding retained_intron MGP_C3HHeJ_T0026019.1 MGP_C3HHeJ_G0017262.1 mouse_genomes_project 10 80357895 80359411 + Plk5 protein_coding retained_intron MGP_C3HHeJ_T0026693.1 MGP_C3HHeJ_G0017431.1 mouse_genomes_project 10 95568333 95729898 - MGP_C3HHeJ_P0026693 Plxnc1 protein_coding protein_coding MGP_C3HHeJ_T0026694.1 MGP_C3HHeJ_G0017431.1 mouse_genomes_project 10 95614669 95623277 - Plxnc1 protein_coding retained_intron MGP_C3HHeJ_T0026695.1 MGP_C3HHeJ_G0017431.1 mouse_genomes_project 10 95637208 95653717 - MGP_C3HHeJ_P0026695 Plxnc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026696.1 MGP_C3HHeJ_G0017431.1 mouse_genomes_project 10 95653498 95706775 - Plxnc1 protein_coding retained_intron MGP_C3HHeJ_T0024317.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8500051 8538628 + MGP_C3HHeJ_P0024317 Shprh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024318.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8500054 8568370 + MGP_C3HHeJ_P0024318 Shprh protein_coding protein_coding MGP_C3HHeJ_T0024319.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8500097 8505151 + Shprh protein_coding retained_intron MGP_C3HHeJ_T0024320.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8500148 8560327 + MGP_C3HHeJ_P0024320 Shprh protein_coding protein_coding MGP_C3HHeJ_T0024321.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8500148 8560327 + MGP_C3HHeJ_P0024321 Shprh protein_coding protein_coding MGP_C3HHeJ_T0024322.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8514870 8520589 + MGP_C3HHeJ_P0024322 Shprh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024323.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8516982 8565072 + Shprh protein_coding retained_intron MGP_C3HHeJ_T0024324.1 MGP_C3HHeJ_G0016773.1 mouse_genomes_project 10 8555572 8560386 + Shprh protein_coding retained_intron MGP_C3HHeJ_T0026490.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88877637 88912651 + MGP_C3HHeJ_P0026490 Gnptab protein_coding protein_coding MGP_C3HHeJ_T0026491.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88877729 88912608 + MGP_C3HHeJ_P0026491 Gnptab protein_coding protein_coding MGP_C3HHeJ_T0026492.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88877729 88945163 + MGP_C3HHeJ_P0026492 Gnptab protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026493.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88877731 88945172 + MGP_C3HHeJ_P0026493 Gnptab protein_coding protein_coding MGP_C3HHeJ_T0026494.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88927583 88931306 + Gnptab protein_coding processed_transcript MGP_C3HHeJ_T0026495.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88931378 88938705 + Gnptab protein_coding processed_transcript MGP_C3HHeJ_T0026496.1 MGP_C3HHeJ_G0017391.1 mouse_genomes_project 10 88933890 88934576 + Gnptab protein_coding retained_intron MGP_C3HHeJ_T0026156.1 MGP_C3HHeJ_G0017304.1 mouse_genomes_project 10 81236972 81258047 + MGP_C3HHeJ_P0026156 Dapk3 protein_coding protein_coding MGP_C3HHeJ_T0025270.1 MGP_C3HHeJ_G0017079.1 mouse_genomes_project 10 62527064 64167123 + MGP_C3HHeJ_P0025270 Ctnna3 protein_coding protein_coding MGP_C3HHeJ_T0025271.1 MGP_C3HHeJ_G0017079.1 mouse_genomes_project 10 62550747 64167825 + MGP_C3HHeJ_P0025271 Ctnna3 protein_coding protein_coding MGP_C3HHeJ_T0025272.1 MGP_C3HHeJ_G0017079.1 mouse_genomes_project 10 62604215 64166991 + MGP_C3HHeJ_P0025272 Ctnna3 protein_coding protein_coding MGP_C3HHeJ_T0025273.1 MGP_C3HHeJ_G0017079.1 mouse_genomes_project 10 62676376 62693346 + Ctnna3 protein_coding processed_transcript MGP_C3HHeJ_T0025274.1 MGP_C3HHeJ_G0017079.1 mouse_genomes_project 10 62934366 63201887 + Ctnna3 protein_coding processed_transcript MGP_C3HHeJ_T0024927.1 MGP_C3HHeJ_G0016979.1 mouse_genomes_project 10 50850951 50856909 + MGP_C3HHeJ_P0024927 Vgll2 protein_coding protein_coding MGP_C3HHeJ_T0024928.1 MGP_C3HHeJ_G0016979.1 mouse_genomes_project 10 50850977 50856781 + MGP_C3HHeJ_P0024928 Vgll2 protein_coding protein_coding MGP_C3HHeJ_T0026726.1 MGP_C3HHeJ_G0017451.1 mouse_genomes_project 10 100094788 100095947 - MGP_C3HHeJ_P0026726 Phxr2 protein_coding protein_coding MGP_C3HHeJ_T0003035.1 MGP_C3HHeJ_G0002827.1 mouse_genomes_project 10 122942513 122945246 + Gm4473 antisense antisense MGP_C3HHeJ_T0024821.1 MGP_C3HHeJ_G0016941.1 mouse_genomes_project 10 40269529 40363216 + MGP_C3HHeJ_P0024821 Sesn1 protein_coding protein_coding MGP_C3HHeJ_T0024822.1 MGP_C3HHeJ_G0016941.1 mouse_genomes_project 10 40338694 40363216 + MGP_C3HHeJ_P0024822 Sesn1 protein_coding protein_coding MGP_C3HHeJ_T0025953.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80155016 80159320 + MGP_C3HHeJ_P0025953 Cirbp protein_coding protein_coding MGP_C3HHeJ_T0025954.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80156767 80160659 + MGP_C3HHeJ_P0025954 Cirbp protein_coding protein_coding MGP_C3HHeJ_T0025955.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80156829 80161790 + MGP_C3HHeJ_P0025955 Cirbp protein_coding protein_coding MGP_C3HHeJ_T0025956.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80156852 80159133 + Cirbp protein_coding retained_intron MGP_C3HHeJ_T0025957.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80156875 80160141 + Cirbp protein_coding retained_intron MGP_C3HHeJ_T0025958.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80159230 80160208 + Cirbp protein_coding retained_intron MGP_C3HHeJ_T0025959.1 MGP_C3HHeJ_G0017249.1 mouse_genomes_project 10 80160985 80161702 + Cirbp protein_coding retained_intron MGP_C3HHeJ_T0006070.1 MGP_C3HHeJ_G0005062.1 mouse_genomes_project 10 96578638 96632071 + 4732465J04Rik lincRNA lincRNA MGP_C3HHeJ_T0006071.1 MGP_C3HHeJ_G0005062.1 mouse_genomes_project 10 96614364 96632476 + 4732465J04Rik lincRNA lincRNA MGP_C3HHeJ_T0025103.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60039089 60090815 - MGP_C3HHeJ_P0025103 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025104.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60039099 60090718 - MGP_C3HHeJ_P0025104 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025105.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60041279 60043580 - protein_coding retained_intron MGP_C3HHeJ_T0025106.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60044649 60045932 - protein_coding retained_intron MGP_C3HHeJ_T0025107.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60054065 60090777 - MGP_C3HHeJ_P0025107 protein_coding protein_coding MGP_C3HHeJ_T0025108.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60055979 60090750 - MGP_C3HHeJ_P0025108 protein_coding protein_coding MGP_C3HHeJ_T0025109.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60059335 60090726 - protein_coding processed_transcript MGP_C3HHeJ_T0025110.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60065210 60089904 - MGP_C3HHeJ_P0025110 protein_coding protein_coding MGP_C3HHeJ_T0025111.1 MGP_C3HHeJ_G0017035.1 mouse_genomes_project 10 60088900 60090678 - protein_coding retained_intron MGP_C3HHeJ_T0009526.1 MGP_C3HHeJ_G0007659.1 mouse_genomes_project 10 85718111 85718215 + Gm25281 miRNA miRNA MGP_C3HHeJ_T0024469.1 MGP_C3HHeJ_G0016813.1 mouse_genomes_project 10 17825123 17957853 + MGP_C3HHeJ_P0024469 Map7 protein_coding protein_coding MGP_C3HHeJ_T0024470.1 MGP_C3HHeJ_G0016813.1 mouse_genomes_project 10 17825572 17960743 + MGP_C3HHeJ_P0024470 Map7 protein_coding protein_coding MGP_C3HHeJ_T0000310.1 MGP_C3HHeJ_G0000260.1 mouse_genomes_project 10 85396626 85396694 + mt-Tp Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0002944.1 MGP_C3HHeJ_G0002759.1 mouse_genomes_project 10 8563054 8563754 - Gm16577 antisense antisense MGP_C3HHeJ_T0002953.1 MGP_C3HHeJ_G0002767.1 mouse_genomes_project 10 31754000 31788312 + Gm15939 antisense antisense MGP_C3HHeJ_T0027376.1 MGP_C3HHeJ_G0017690.1 mouse_genomes_project 10 132254051 132258035 - MGP_C3HHeJ_P0027376 Olfr812 protein_coding protein_coding MGP_C3HHeJ_T0027377.1 MGP_C3HHeJ_G0017690.1 mouse_genomes_project 10 132254051 132255094 - MGP_C3HHeJ_P0027377 Olfr812 protein_coding protein_coding MGP_C3HHeJ_T0098742.1 MGP_C3HHeJ_G0036936.1 mouse_genomes_project 10 110701081 110701187 - Gm23041 snRNA snRNA MGP_C3HHeJ_T0025488.1 MGP_C3HHeJ_G0017114.1 mouse_genomes_project 10 74873934 74891764 + MGP_C3HHeJ_P0025488 Adora2a protein_coding protein_coding MGP_C3HHeJ_T0026066.1 MGP_C3HHeJ_G0017275.1 mouse_genomes_project 10 80660221 80675372 - MGP_C3HHeJ_P0026066 Btbd2 protein_coding protein_coding MGP_C3HHeJ_T0026067.1 MGP_C3HHeJ_G0017275.1 mouse_genomes_project 10 80660221 80674795 - MGP_C3HHeJ_P0026067 Btbd2 protein_coding protein_coding MGP_C3HHeJ_T0026068.1 MGP_C3HHeJ_G0017275.1 mouse_genomes_project 10 80660227 80662242 - Btbd2 protein_coding retained_intron MGP_C3HHeJ_T0026069.1 MGP_C3HHeJ_G0017275.1 mouse_genomes_project 10 80661733 80665999 - Btbd2 protein_coding retained_intron MGP_C3HHeJ_T0026070.1 MGP_C3HHeJ_G0017275.1 mouse_genomes_project 10 80662247 80674439 - MGP_C3HHeJ_P0026070 Btbd2 protein_coding protein_coding MGP_C3HHeJ_T0024387.1 MGP_C3HHeJ_G0016787.1 mouse_genomes_project 10 11394646 11587312 + MGP_C3HHeJ_P0024387 Hivep2 protein_coding protein_coding MGP_C3HHeJ_T0024388.1 MGP_C3HHeJ_G0016787.1 mouse_genomes_project 10 11394950 11588098 + MGP_C3HHeJ_P0024388 Hivep2 protein_coding protein_coding MGP_C3HHeJ_T0024389.1 MGP_C3HHeJ_G0016787.1 mouse_genomes_project 10 11394950 11588097 + MGP_C3HHeJ_P0024389 Hivep2 protein_coding protein_coding MGP_C3HHeJ_T0024390.1 MGP_C3HHeJ_G0016787.1 mouse_genomes_project 10 11395215 11565523 + MGP_C3HHeJ_P0024390 Hivep2 protein_coding protein_coding MGP_C3HHeJ_T0024391.1 MGP_C3HHeJ_G0016787.1 mouse_genomes_project 10 11395529 11435301 + Hivep2 protein_coding retained_intron MGP_C3HHeJ_T0024392.1 MGP_C3HHeJ_G0016787.1 mouse_genomes_project 10 11395592 11514267 + Hivep2 protein_coding processed_transcript MGP_C3HHeJ_T0097982.1 MGP_C3HHeJ_G0036194.1 mouse_genomes_project 10 78375465 78375581 + Gm25164 rRNA rRNA MGP_C3HHeJ_T0025485.1 MGP_C3HHeJ_G0017112.1 mouse_genomes_project 10 74609294 74737544 + MGP_C3HHeJ_P0025485 Bcr protein_coding protein_coding MGP_C3HHeJ_T0024618.1 MGP_C3HHeJ_G0016868.1 mouse_genomes_project 10 26952808 26965899 - MGP_C3HHeJ_P0024618 2310057J18Rik protein_coding protein_coding MGP_C3HHeJ_T0024619.1 MGP_C3HHeJ_G0016868.1 mouse_genomes_project 10 26952884 26966808 - MGP_C3HHeJ_P0024619 2310057J18Rik protein_coding protein_coding MGP_C3HHeJ_T0024620.1 MGP_C3HHeJ_G0016868.1 mouse_genomes_project 10 26952886 26954710 - 2310057J18Rik protein_coding retained_intron MGP_C3HHeJ_T0024621.1 MGP_C3HHeJ_G0016868.1 mouse_genomes_project 10 26952886 26966818 - MGP_C3HHeJ_P0024621 2310057J18Rik protein_coding protein_coding MGP_C3HHeJ_T0012287.1 MGP_C3HHeJ_G0010391.1 mouse_genomes_project 10 18208683 18210628 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027191.1 MGP_C3HHeJ_G0017608.1 mouse_genomes_project 10 130341723 130360202 + MGP_C3HHeJ_P0027191 Ptges3 protein_coding protein_coding MGP_C3HHeJ_T0027192.1 MGP_C3HHeJ_G0017608.1 mouse_genomes_project 10 130341780 130359909 + MGP_C3HHeJ_P0027192 Ptges3 protein_coding protein_coding MGP_C3HHeJ_T0027193.1 MGP_C3HHeJ_G0017608.1 mouse_genomes_project 10 130352193 130355296 + Ptges3 protein_coding retained_intron MGP_C3HHeJ_T0026949.1 MGP_C3HHeJ_G0017531.1 mouse_genomes_project 10 120774045 120783600 - MGP_C3HHeJ_P0026949 Dyrk2 protein_coding protein_coding MGP_C3HHeJ_T0026812.1 MGP_C3HHeJ_G0017481.1 mouse_genomes_project 10 111021704 111356983 - MGP_C3HHeJ_P0026812 Nav3 protein_coding protein_coding MGP_C3HHeJ_T0026813.1 MGP_C3HHeJ_G0017481.1 mouse_genomes_project 10 111021704 111174008 - MGP_C3HHeJ_P0026813 Nav3 protein_coding protein_coding MGP_C3HHeJ_T0026814.1 MGP_C3HHeJ_G0017481.1 mouse_genomes_project 10 111055842 111065332 - Nav3 protein_coding processed_transcript MGP_C3HHeJ_T0026815.1 MGP_C3HHeJ_G0017481.1 mouse_genomes_project 10 111096949 111108766 - MGP_C3HHeJ_P0026815 Nav3 protein_coding protein_coding MGP_C3HHeJ_T0026816.1 MGP_C3HHeJ_G0017481.1 mouse_genomes_project 10 111233621 111257499 - Nav3 protein_coding retained_intron MGP_C3HHeJ_T0026817.1 MGP_C3HHeJ_G0017481.1 mouse_genomes_project 10 111252580 111824093 - Nav3 protein_coding retained_intron MGP_C3HHeJ_T0098708.1 MGP_C3HHeJ_G0036902.1 mouse_genomes_project 10 45509510 45509672 - Gm25650 snRNA snRNA MGP_C3HHeJ_T0027039.1 MGP_C3HHeJ_G0017557.1 mouse_genomes_project 10 127392002 127496763 - MGP_C3HHeJ_P0027039 Slc16a7 protein_coding protein_coding MGP_C3HHeJ_T0027040.1 MGP_C3HHeJ_G0017557.1 mouse_genomes_project 10 127393032 127475942 - MGP_C3HHeJ_P0027040 Slc16a7 protein_coding protein_coding MGP_C3HHeJ_T0024600.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 24942385 24950832 - Lama2 protein_coding retained_intron MGP_C3HHeJ_T0024601.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 24943634 25610043 - MGP_C3HHeJ_P0024601 Lama2 protein_coding protein_coding MGP_C3HHeJ_T0024602.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 24943740 25487916 - MGP_C3HHeJ_P0024602 Lama2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024603.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 25164220 25609996 - MGP_C3HHeJ_P0024603 Lama2 protein_coding protein_coding MGP_C3HHeJ_T0024604.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 25244481 25610142 - Lama2 protein_coding retained_intron MGP_C3HHeJ_T0024605.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 25334075 25610066 - Lama2 protein_coding retained_intron MGP_C3HHeJ_T0024606.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 25407687 25612958 - Lama2 protein_coding retained_intron MGP_C3HHeJ_T0024607.1 MGP_C3HHeJ_G0016865.1 mouse_genomes_project 10 25457366 25610066 - Lama2 protein_coding processed_transcript MGP_C3HHeJ_T0012326.1 MGP_C3HHeJ_G0010430.1 mouse_genomes_project 10 94408591 94409958 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006049.1 MGP_C3HHeJ_G0005053.1 mouse_genomes_project 10 88877749 88882217 - Gm26546 lincRNA lincRNA MGP_C3HHeJ_T0027355.1 MGP_C3HHeJ_G0017677.1 mouse_genomes_project 10 131988274 131989207 - MGP_C3HHeJ_P0027355 Olfr796 protein_coding protein_coding MGP_C3HHeJ_T0027356.1 MGP_C3HHeJ_G0017677.1 mouse_genomes_project 10 131988274 131993535 - MGP_C3HHeJ_P0027356 Olfr796 protein_coding protein_coding MGP_C3HHeJ_T0024890.1 MGP_C3HHeJ_G0016963.1 mouse_genomes_project 10 42808798 42820314 + MGP_C3HHeJ_P0024890 protein_coding protein_coding MGP_C3HHeJ_T0026583.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91639219 91740450 - MGP_C3HHeJ_P0026583 Apaf1 protein_coding protein_coding MGP_C3HHeJ_T0026584.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91639221 91641500 - Apaf1 protein_coding retained_intron MGP_C3HHeJ_T0026585.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91639226 91740558 - MGP_C3HHeJ_P0026585 Apaf1 protein_coding protein_coding MGP_C3HHeJ_T0026586.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91640511 91740492 - MGP_C3HHeJ_P0026586 Apaf1 protein_coding protein_coding MGP_C3HHeJ_T0026587.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91645630 91650301 - Apaf1 protein_coding processed_transcript MGP_C3HHeJ_T0026588.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91646630 91649612 - Apaf1 protein_coding retained_intron MGP_C3HHeJ_T0026589.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91721182 91740217 - MGP_C3HHeJ_P0026589 Apaf1 protein_coding protein_coding MGP_C3HHeJ_T0026590.1 MGP_C3HHeJ_G0017407.1 mouse_genomes_project 10 91723117 91740558 - MGP_C3HHeJ_P0026590 Apaf1 protein_coding protein_coding MGP_C3HHeJ_T0098730.1 MGP_C3HHeJ_G0036924.1 mouse_genomes_project 10 88654857 88654972 - Gm26357 snRNA snRNA MGP_C3HHeJ_T0025597.1 MGP_C3HHeJ_G0017148.1 mouse_genomes_project 10 76247129 76263490 + MGP_C3HHeJ_P0025597 Ftcd protein_coding protein_coding MGP_C3HHeJ_T0025598.1 MGP_C3HHeJ_G0017148.1 mouse_genomes_project 10 76247133 76264267 + Ftcd protein_coding retained_intron MGP_C3HHeJ_T0025599.1 MGP_C3HHeJ_G0017148.1 mouse_genomes_project 10 76247187 76263241 + MGP_C3HHeJ_P0025599 Ftcd protein_coding unknown_likely_coding MGP_C3HHeJ_T0025600.1 MGP_C3HHeJ_G0017148.1 mouse_genomes_project 10 76261061 76262497 + Ftcd protein_coding processed_transcript MGP_C3HHeJ_T0009533.1 MGP_C3HHeJ_G0007666.1 mouse_genomes_project 10 95352956 95353019 - Mir7211 miRNA miRNA MGP_C3HHeJ_T0024335.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10448239 10515576 + MGP_C3HHeJ_P0024335 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0024336.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478288 10513082 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024337.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478309 10513237 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024338.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478385 10513121 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024339.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478385 10519800 + MGP_C3HHeJ_P0024339 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0024340.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10502451 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024341.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10504966 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024342.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10505025 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024343.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10504948 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024344.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10505008 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024345.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10513202 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024346.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10496495 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024347.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10504964 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024348.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10493968 + Plagl1 protein_coding retained_intron MGP_C3HHeJ_T0024349.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10513139 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024350.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10513121 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024351.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10500793 + Plagl1 protein_coding processed_transcript MGP_C3HHeJ_T0024352.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478429 10519204 + MGP_C3HHeJ_P0024352 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0024353.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478432 10519191 + MGP_C3HHeJ_P0024353 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0024354.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478438 10501689 + Plagl1 protein_coding retained_intron MGP_C3HHeJ_T0024355.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478471 10501029 + Plagl1 protein_coding retained_intron MGP_C3HHeJ_T0024356.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478471 10501129 + Plagl1 protein_coding retained_intron MGP_C3HHeJ_T0024357.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10478610 10513252 + MGP_C3HHeJ_P0024357 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0024358.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10501709 10515563 + MGP_C3HHeJ_P0024358 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0024359.1 MGP_C3HHeJ_G0016779.1 mouse_genomes_project 10 10504607 10513289 + MGP_C3HHeJ_P0024359 Plagl1 protein_coding protein_coding MGP_C3HHeJ_T0025822.1 MGP_C3HHeJ_G0017221.1 mouse_genomes_project 10 79727331 79735787 - MGP_C3HHeJ_P0025822 Rnf126 protein_coding protein_coding MGP_C3HHeJ_T0026675.1 MGP_C3HHeJ_G0017426.1 mouse_genomes_project 10 94897842 94948432 + MGP_C3HHeJ_P0026675 Nr2c1 protein_coding protein_coding MGP_C3HHeJ_T0026676.1 MGP_C3HHeJ_G0017426.1 mouse_genomes_project 10 94898238 94946904 + MGP_C3HHeJ_P0026676 Nr2c1 protein_coding protein_coding MGP_C3HHeJ_T0026677.1 MGP_C3HHeJ_G0017426.1 mouse_genomes_project 10 94906141 94946574 + MGP_C3HHeJ_P0026677 Nr2c1 protein_coding protein_coding MGP_C3HHeJ_T0024522.1 MGP_C3HHeJ_G0016828.1 mouse_genomes_project 10 20511049 20567545 + MGP_C3HHeJ_P0024522 Slc2a12 protein_coding protein_coding MGP_C3HHeJ_T0024523.1 MGP_C3HHeJ_G0016828.1 mouse_genomes_project 10 20515046 20530545 + Slc2a12 protein_coding processed_transcript MGP_C3HHeJ_T0009537.1 MGP_C3HHeJ_G0007670.1 mouse_genomes_project 10 102861303 102861384 + Mir3059 miRNA miRNA MGP_C3HHeJ_T0025917.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80104447 80119084 + MGP_C3HHeJ_P0025917 Stk11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025918.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80104447 80119297 + MGP_C3HHeJ_P0025918 Stk11 protein_coding protein_coding MGP_C3HHeJ_T0025919.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80104991 80119085 + MGP_C3HHeJ_P0025919 Stk11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025920.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80104998 80106459 + Stk11 protein_coding processed_transcript MGP_C3HHeJ_T0025921.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80105262 80119093 + MGP_C3HHeJ_P0025921 Stk11 protein_coding protein_coding MGP_C3HHeJ_T0025922.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80113410 80118590 + Stk11 protein_coding retained_intron MGP_C3HHeJ_T0025923.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80113966 80115101 + Stk11 protein_coding retained_intron MGP_C3HHeJ_T0025924.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80114977 80116814 + Stk11 protein_coding retained_intron MGP_C3HHeJ_T0025925.1 MGP_C3HHeJ_G0017245.1 mouse_genomes_project 10 80115273 80119085 + MGP_C3HHeJ_P0025925 Stk11 protein_coding protein_coding MGP_C3HHeJ_T0026538.1 MGP_C3HHeJ_G0017401.1 mouse_genomes_project 10 90027784 90080704 - MGP_C3HHeJ_P0026538 Nr1h4 protein_coding protein_coding MGP_C3HHeJ_T0026539.1 MGP_C3HHeJ_G0017401.1 mouse_genomes_project 10 90027784 90080695 - MGP_C3HHeJ_P0026539 Nr1h4 protein_coding protein_coding MGP_C3HHeJ_T0026540.1 MGP_C3HHeJ_G0017401.1 mouse_genomes_project 10 90027923 90113006 - MGP_C3HHeJ_P0026540 Nr1h4 protein_coding protein_coding MGP_C3HHeJ_T0012292.1 MGP_C3HHeJ_G0010396.1 mouse_genomes_project 10 22452588 22455642 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027110.1 MGP_C3HHeJ_G0017581.1 mouse_genomes_project 10 129540660 129546870 + MGP_C3HHeJ_P0027110 Arhgap9 protein_coding protein_coding MGP_C3HHeJ_T0024936.1 MGP_C3HHeJ_G0016982.1 mouse_genomes_project 10 51183350 51233002 - MGP_C3HHeJ_P0024936 Gopc protein_coding protein_coding MGP_C3HHeJ_T0024937.1 MGP_C3HHeJ_G0016982.1 mouse_genomes_project 10 51183350 51233002 - MGP_C3HHeJ_P0024937 Gopc protein_coding protein_coding MGP_C3HHeJ_T0024938.1 MGP_C3HHeJ_G0016982.1 mouse_genomes_project 10 51186049 51232776 - MGP_C3HHeJ_P0024938 Gopc protein_coding unknown_likely_coding MGP_C3HHeJ_T0024949.1 MGP_C3HHeJ_G0016990.1 mouse_genomes_project 10 52435119 52526295 - MGP_C3HHeJ_P0024949 Mcm9 protein_coding protein_coding MGP_C3HHeJ_T0024950.1 MGP_C3HHeJ_G0016990.1 mouse_genomes_project 10 52436114 52492770 - MGP_C3HHeJ_P0024950 Mcm9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026704.1 MGP_C3HHeJ_G0017434.1 mouse_genomes_project 10 96296968 96320081 - MGP_C3HHeJ_P0026704 Mrpl42 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009536.1 MGP_C3HHeJ_G0007669.1 mouse_genomes_project 10 98337133 98337218 + Mir3966 miRNA miRNA MGP_C3HHeJ_T0024879.1 MGP_C3HHeJ_G0016956.1 mouse_genomes_project 10 42166228 42203771 + MGP_C3HHeJ_P0024879 F930017D23Rik protein_coding protein_coding MGP_C3HHeJ_T0011187.1 MGP_C3HHeJ_G0009320.1 mouse_genomes_project 10 92818694 92818820 - Gm27582 misc_RNA misc_RNA MGP_C3HHeJ_T0026358.1 MGP_C3HHeJ_G0017351.1 mouse_genomes_project 10 83794726 83842172 - MGP_C3HHeJ_P0026358 Aldh1l2 protein_coding protein_coding MGP_C3HHeJ_T0026359.1 MGP_C3HHeJ_G0017351.1 mouse_genomes_project 10 83797484 83800285 - Aldh1l2 protein_coding processed_transcript MGP_C3HHeJ_T0026360.1 MGP_C3HHeJ_G0017351.1 mouse_genomes_project 10 83798887 83801770 - Aldh1l2 protein_coding processed_transcript MGP_C3HHeJ_T0026361.1 MGP_C3HHeJ_G0017351.1 mouse_genomes_project 10 83798889 83842239 - Aldh1l2 protein_coding retained_intron MGP_C3HHeJ_T0026362.1 MGP_C3HHeJ_G0017351.1 mouse_genomes_project 10 83804173 83813234 - Aldh1l2 protein_coding processed_transcript MGP_C3HHeJ_T0026363.1 MGP_C3HHeJ_G0017351.1 mouse_genomes_project 10 83808355 83819067 - Aldh1l2 protein_coding processed_transcript MGP_C3HHeJ_T0011181.1 MGP_C3HHeJ_G0009314.1 mouse_genomes_project 10 78221616 78221924 - Gm22514 misc_RNA misc_RNA MGP_C3HHeJ_T0024961.1 MGP_C3HHeJ_G0016993.1 mouse_genomes_project 10 52801999 52981737 - MGP_C3HHeJ_P0024961 Man1a protein_coding protein_coding MGP_C3HHeJ_T0024962.1 MGP_C3HHeJ_G0016993.1 mouse_genomes_project 10 52804226 52981650 - MGP_C3HHeJ_P0024962 Man1a protein_coding protein_coding MGP_C3HHeJ_T0024963.1 MGP_C3HHeJ_G0016993.1 mouse_genomes_project 10 52879764 52981650 - Man1a protein_coding retained_intron MGP_C3HHeJ_T0024964.1 MGP_C3HHeJ_G0016993.1 mouse_genomes_project 10 52909331 52981677 - MGP_C3HHeJ_P0024964 Man1a protein_coding protein_coding MGP_C3HHeJ_T0024965.1 MGP_C3HHeJ_G0016993.1 mouse_genomes_project 10 52917459 52981678 - Man1a protein_coding retained_intron MGP_C3HHeJ_T0025282.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66353051 66450785 + Jmjd1c protein_coding retained_intron MGP_C3HHeJ_T0025283.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66353331 66416977 + Jmjd1c protein_coding retained_intron MGP_C3HHeJ_T0025284.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66353418 66484518 + MGP_C3HHeJ_P0025284 Jmjd1c protein_coding protein_coding MGP_C3HHeJ_T0025285.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66386062 66515847 + MGP_C3HHeJ_P0025285 Jmjd1c protein_coding protein_coding MGP_C3HHeJ_T0025286.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66386062 66515848 + MGP_C3HHeJ_P0025286 Jmjd1c protein_coding protein_coding MGP_C3HHeJ_T0025287.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66444785 66475163 + Jmjd1c protein_coding retained_intron MGP_C3HHeJ_T0025288.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66444789 66450787 + Jmjd1c protein_coding retained_intron MGP_C3HHeJ_T0025289.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66476731 66477348 + Jmjd1c protein_coding retained_intron MGP_C3HHeJ_T0025290.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66497701 66512197 + MGP_C3HHeJ_P0025290 Jmjd1c protein_coding protein_coding MGP_C3HHeJ_T0025291.1 MGP_C3HHeJ_G0017083.1 mouse_genomes_project 10 66498475 66504972 + Jmjd1c protein_coding retained_intron MGP_C3HHeJ_T0024636.1 MGP_C3HHeJ_G0016876.1 mouse_genomes_project 10 28605106 28672927 - MGP_C3HHeJ_P0024636 Trmt11 protein_coding protein_coding MGP_C3HHeJ_T0026195.1 MGP_C3HHeJ_G0017315.1 mouse_genomes_project 10 81416859 81422287 - MGP_C3HHeJ_P0026195 Gipc3 protein_coding protein_coding MGP_C3HHeJ_T0025774.1 MGP_C3HHeJ_G0017206.1 mouse_genomes_project 10 79406412 79434178 + MGP_C3HHeJ_P0025774 Vmn2r83 protein_coding protein_coding MGP_C3HHeJ_T0024361.1 MGP_C3HHeJ_G0016781.1 mouse_genomes_project 10 10566931 10581462 - MGP_C3HHeJ_P0024361 Ltv1 protein_coding protein_coding MGP_C3HHeJ_T0026320.1 MGP_C3HHeJ_G0017339.1 mouse_genomes_project 10 82546860 82551631 + MGP_C3HHeJ_P0026320 Gm4924 protein_coding protein_coding MGP_C3HHeJ_T0027339.1 MGP_C3HHeJ_G0017665.1 mouse_genomes_project 10 131725018 131729875 + MGP_C3HHeJ_P0027339 Olfr781 protein_coding protein_coding MGP_C3HHeJ_T0027340.1 MGP_C3HHeJ_G0017665.1 mouse_genomes_project 10 131728939 131729875 + MGP_C3HHeJ_P0027340 Olfr781 protein_coding protein_coding MGP_C3HHeJ_T0026860.1 MGP_C3HHeJ_G0017501.1 mouse_genomes_project 10 117061918 117077519 - MGP_C3HHeJ_P0026860 Thap2 protein_coding protein_coding MGP_C3HHeJ_T0009558.1 MGP_C3HHeJ_G0007691.1 mouse_genomes_project 10 130772238 130772327 + Mir8105 miRNA miRNA MGP_C3HHeJ_T0026919.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119168732 119201335 - MGP_C3HHeJ_P0026919 Cpsf6 protein_coding protein_coding MGP_C3HHeJ_T0026920.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119173098 119201338 - MGP_C3HHeJ_P0026920 Cpsf6 protein_coding protein_coding MGP_C3HHeJ_T0026921.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119173101 119201294 - MGP_C3HHeJ_P0026921 Cpsf6 protein_coding protein_coding MGP_C3HHeJ_T0026922.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119173433 119185461 - MGP_C3HHeJ_P0026922 Cpsf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026923.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119177865 119201293 - MGP_C3HHeJ_P0026923 Cpsf6 protein_coding protein_coding MGP_C3HHeJ_T0026924.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119179586 119180117 - MGP_C3HHeJ_P0026924 Cpsf6 protein_coding protein_coding MGP_C3HHeJ_T0026925.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119182943 119187750 - Cpsf6 protein_coding retained_intron MGP_C3HHeJ_T0026926.1 MGP_C3HHeJ_G0017523.1 mouse_genomes_project 10 119190665 119204377 - MGP_C3HHeJ_P0026926 Cpsf6 protein_coding protein_coding MGP_C3HHeJ_T0098698.1 MGP_C3HHeJ_G0036892.1 mouse_genomes_project 10 28555307 28555409 + Gm22623 snRNA snRNA MGP_C3HHeJ_T0006020.1 MGP_C3HHeJ_G0005031.1 mouse_genomes_project 10 56567415 56575384 - 4930467K11Rik lincRNA lincRNA MGP_C3HHeJ_T0012280.1 MGP_C3HHeJ_G0010384.1 mouse_genomes_project 10 1374310 1377008 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025302.1 MGP_C3HHeJ_G0017087.1 mouse_genomes_project 10 66858646 66860868 + MGP_C3HHeJ_P0025302 Gm10797 protein_coding protein_coding MGP_C3HHeJ_T0009504.1 MGP_C3HHeJ_G0007637.1 mouse_genomes_project 10 61715765 61715816 + Mir7215 miRNA miRNA MGP_C3HHeJ_T0025790.1 MGP_C3HHeJ_G0017209.1 mouse_genomes_project 10 79534431 79546739 - MGP_C3HHeJ_P0025790 Theg protein_coding protein_coding MGP_C3HHeJ_T0098703.1 MGP_C3HHeJ_G0036897.1 mouse_genomes_project 10 39807566 39807673 + Gm25626 snRNA snRNA MGP_C3HHeJ_T0002962.1 MGP_C3HHeJ_G0002772.1 mouse_genomes_project 10 40197975 40205143 + BC048559 antisense antisense MGP_C3HHeJ_T0016871.1 MGP_C3HHeJ_G0014889.1 mouse_genomes_project 10 1419570 1433526 + Gm16153 processed_transcript processed_transcript MGP_C3HHeJ_T0003012.1 MGP_C3HHeJ_G0002813.1 mouse_genomes_project 10 88942078 88947730 - Gm16235 antisense antisense MGP_C3HHeJ_T0003013.1 MGP_C3HHeJ_G0002813.1 mouse_genomes_project 10 88942996 88943777 - Gm16235 antisense antisense MGP_C3HHeJ_T0027176.1 MGP_C3HHeJ_G0017601.1 mouse_genomes_project 10 130059073 130065205 + MGP_C3HHeJ_P0027176 protein_coding protein_coding MGP_C3HHeJ_T0025528.1 MGP_C3HHeJ_G0017121.1 mouse_genomes_project 10 75215463 75223229 - MGP_C3HHeJ_P0025528 Susd2 protein_coding protein_coding MGP_C3HHeJ_T0025529.1 MGP_C3HHeJ_G0017121.1 mouse_genomes_project 10 75215463 75223229 - MGP_C3HHeJ_P0025529 Susd2 protein_coding protein_coding MGP_C3HHeJ_T0027170.1 MGP_C3HHeJ_G0017596.1 mouse_genomes_project 10 129989842 129997583 + MGP_C3HHeJ_P0027170 Zbtb39 protein_coding protein_coding MGP_C3HHeJ_T0006015.1 MGP_C3HHeJ_G0005026.1 mouse_genomes_project 10 38211236 38212710 - Gm26824 lincRNA lincRNA MGP_C3HHeJ_T0026715.1 MGP_C3HHeJ_G0017444.1 mouse_genomes_project 10 98571543 98606660 + MGP_C3HHeJ_P0026715 Epyc protein_coding protein_coding MGP_C3HHeJ_T0026716.1 MGP_C3HHeJ_G0017444.1 mouse_genomes_project 10 98574564 98607214 + MGP_C3HHeJ_P0026716 Epyc protein_coding protein_coding MGP_C3HHeJ_T0098691.1 MGP_C3HHeJ_G0036885.1 mouse_genomes_project 10 9711821 9711986 + Gm23680 snRNA snRNA MGP_C3HHeJ_T0000790.1 MGP_C3HHeJ_G0000732.1 mouse_genomes_project 10 76665532 76666210 - TEC TEC MGP_C3HHeJ_T0024165.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1442867 1461691 + Armt1 protein_coding processed_transcript MGP_C3HHeJ_T0024166.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1442867 1445781 + Armt1 protein_coding retained_intron MGP_C3HHeJ_T0024167.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1442867 1465285 + MGP_C3HHeJ_P0024167 Armt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024168.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1442867 1466467 + MGP_C3HHeJ_P0024168 Armt1 protein_coding protein_coding MGP_C3HHeJ_T0024169.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1442867 1450580 + MGP_C3HHeJ_P0024169 Armt1 protein_coding protein_coding MGP_C3HHeJ_T0024170.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1442867 1466468 + MGP_C3HHeJ_P0024170 Armt1 protein_coding protein_coding MGP_C3HHeJ_T0024171.1 MGP_C3HHeJ_G0016740.1 mouse_genomes_project 10 1445187 1451076 + Armt1 protein_coding processed_transcript MGP_C3HHeJ_T0025534.1 MGP_C3HHeJ_G0017125.1 mouse_genomes_project 10 75357177 75364460 - MGP_C3HHeJ_P0025534 Gstt3 protein_coding protein_coding MGP_C3HHeJ_T0025535.1 MGP_C3HHeJ_G0017125.1 mouse_genomes_project 10 75357862 75360323 - Gstt3 protein_coding processed_transcript MGP_C3HHeJ_T0025536.1 MGP_C3HHeJ_G0017125.1 mouse_genomes_project 10 75357982 75364064 - MGP_C3HHeJ_P0025536 Gstt3 protein_coding protein_coding MGP_C3HHeJ_T0025537.1 MGP_C3HHeJ_G0017125.1 mouse_genomes_project 10 75358462 75359927 - MGP_C3HHeJ_P0025537 Gstt3 protein_coding protein_coding MGP_C3HHeJ_T0025538.1 MGP_C3HHeJ_G0017125.1 mouse_genomes_project 10 75359816 75364096 - MGP_C3HHeJ_P0025538 Gstt3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009550.1 MGP_C3HHeJ_G0007683.1 mouse_genomes_project 10 128879773 128879883 - Mir378d miRNA miRNA MGP_C3HHeJ_T0097838.1 MGP_C3HHeJ_G0036050.1 mouse_genomes_project 10 69686999 69689620 - pseudogene pseudogene MGP_C3HHeJ_T0011179.1 MGP_C3HHeJ_G0009312.1 mouse_genomes_project 10 69924073 69924385 - Gm22320 misc_RNA misc_RNA MGP_C3HHeJ_T0002966.1 MGP_C3HHeJ_G0002776.1 mouse_genomes_project 10 43928428 43930392 - Gm15934 antisense antisense MGP_C3HHeJ_T0025388.1 MGP_C3HHeJ_G0017099.1 mouse_genomes_project 10 69856615 69987843 + MGP_C3HHeJ_P0025388 Fam13c protein_coding protein_coding MGP_C3HHeJ_T0025389.1 MGP_C3HHeJ_G0017099.1 mouse_genomes_project 10 69856827 69987843 + MGP_C3HHeJ_P0025389 Fam13c protein_coding protein_coding MGP_C3HHeJ_T0025390.1 MGP_C3HHeJ_G0017099.1 mouse_genomes_project 10 69856873 69987845 + MGP_C3HHeJ_P0025390 Fam13c protein_coding protein_coding MGP_C3HHeJ_T0026045.1 MGP_C3HHeJ_G0017267.1 mouse_genomes_project 10 80501487 80526315 + MGP_C3HHeJ_P0026045 Onecut3 protein_coding protein_coding MGP_C3HHeJ_T0027141.1 MGP_C3HHeJ_G0017589.1 mouse_genomes_project 10 129760365 129769430 - MGP_C3HHeJ_P0027141 Nxph4 protein_coding protein_coding MGP_C3HHeJ_T0099960.1 MGP_C3HHeJ_G0038154.1 mouse_genomes_project 10 93401140 93401283 - Gm24241 snoRNA snoRNA MGP_C3HHeJ_T0024654.1 MGP_C3HHeJ_G0016883.1 mouse_genomes_project 10 29589341 29714571 - MGP_C3HHeJ_P0024654 Rnf217 protein_coding protein_coding MGP_C3HHeJ_T0026262.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81666438 81682307 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026263.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81666611 81667673 + MGP_C3HHeJ_P0026263 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026264.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81666616 81672166 + MGP_C3HHeJ_P0026264 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026265.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81667100 81682311 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026266.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81667102 81682314 + MGP_C3HHeJ_P0026266 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026267.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81667171 81682314 + MGP_C3HHeJ_P0026267 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026268.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81667257 81682309 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026269.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81667339 81672476 + MGP_C3HHeJ_P0026269 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026270.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81667372 81682686 + MGP_C3HHeJ_P0026270 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026271.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81672674 81678768 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026272.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81674383 81678725 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026273.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81678932 81679787 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026274.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81679266 81682264 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0026275.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81679809 81682314 + MGP_C3HHeJ_P0026275 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026276.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81679839 81682314 + MGP_C3HHeJ_P0026276 Tle2 protein_coding protein_coding MGP_C3HHeJ_T0026277.1 MGP_C3HHeJ_G0017329.1 mouse_genomes_project 10 81680481 81682142 + Tle2 protein_coding retained_intron MGP_C3HHeJ_T0027347.1 MGP_C3HHeJ_G0017670.1 mouse_genomes_project 10 131841476 131844911 + MGP_C3HHeJ_P0027347 Olfr787 protein_coding protein_coding MGP_C3HHeJ_T0006035.1 MGP_C3HHeJ_G0005042.1 mouse_genomes_project 10 70741338 70744563 + Gm20609 lincRNA lincRNA MGP_C3HHeJ_T0027362.1 MGP_C3HHeJ_G0017681.1 mouse_genomes_project 10 132066472 132067608 - MGP_C3HHeJ_P0027362 Olfr802 protein_coding protein_coding MGP_C3HHeJ_T0027363.1 MGP_C3HHeJ_G0017681.1 mouse_genomes_project 10 132066472 132070884 - MGP_C3HHeJ_P0027363 Olfr802 protein_coding protein_coding MGP_C3HHeJ_T0012334.1 MGP_C3HHeJ_G0010438.1 mouse_genomes_project 10 119415150 119415880 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025214.1 MGP_C3HHeJ_G0017063.1 mouse_genomes_project 10 61607982 61631336 - MGP_C3HHeJ_P0025214 Ddx21 protein_coding protein_coding MGP_C3HHeJ_T0099924.1 MGP_C3HHeJ_G0038118.1 mouse_genomes_project 10 9296510 9296636 + Gm25011 snoRNA snoRNA MGP_C3HHeJ_T0025011.1 MGP_C3HHeJ_G0017010.1 mouse_genomes_project 10 57419033 57494081 - MGP_C3HHeJ_P0025011 Edar protein_coding protein_coding MGP_C3HHeJ_T0000806.1 MGP_C3HHeJ_G0000747.1 mouse_genomes_project 10 122690717 122694419 - TEC TEC MGP_C3HHeJ_T0026061.1 MGP_C3HHeJ_G0017273.1 mouse_genomes_project 10 80619115 80631986 + MGP_C3HHeJ_P0026061 Scamp4 protein_coding protein_coding MGP_C3HHeJ_T0026062.1 MGP_C3HHeJ_G0017273.1 mouse_genomes_project 10 80619486 80631166 + MGP_C3HHeJ_P0026062 Scamp4 protein_coding protein_coding MGP_C3HHeJ_T0027395.1 MGP_C3HHeJ_G0017705.1 mouse_genomes_project 10 132876577 132908122 - MGP_C3HHeJ_P0027395 protein_coding protein_coding MGP_C3HHeJ_T0027263.1 MGP_C3HHeJ_G0017629.1 mouse_genomes_project 10 130804615 130807569 - MGP_C3HHeJ_P0027263 Myl6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027264.1 MGP_C3HHeJ_G0017629.1 mouse_genomes_project 10 130804617 130807633 - MGP_C3HHeJ_P0027264 Myl6 protein_coding protein_coding MGP_C3HHeJ_T0000785.1 MGP_C3HHeJ_G0000727.1 mouse_genomes_project 10 25606767 25608528 - TEC TEC MGP_C3HHeJ_T0025472.1 MGP_C3HHeJ_G0017110.1 mouse_genomes_project 10 74509411 74560508 + MGP_C3HHeJ_P0025472 Gnaz protein_coding protein_coding MGP_C3HHeJ_T0025473.1 MGP_C3HHeJ_G0017110.1 mouse_genomes_project 10 74509443 74535376 + Gnaz protein_coding processed_transcript MGP_C3HHeJ_T0025474.1 MGP_C3HHeJ_G0017110.1 mouse_genomes_project 10 74534172 74560497 + MGP_C3HHeJ_P0025474 Gnaz protein_coding protein_coding MGP_C3HHeJ_T0025616.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76716964 76727088 + MGP_C3HHeJ_P0025616 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025617.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76716994 76726574 + MGP_C3HHeJ_P0025617 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025618.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76717411 76735159 + MGP_C3HHeJ_P0025618 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025619.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76717939 76735158 + MGP_C3HHeJ_P0025619 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025620.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76717995 76730995 + MGP_C3HHeJ_P0025620 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025621.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76718008 76727683 + MGP_C3HHeJ_P0025621 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025622.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76718046 76727057 + MGP_C3HHeJ_P0025622 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025623.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76727226 76729625 + Slc19a1 protein_coding retained_intron MGP_C3HHeJ_T0025624.1 MGP_C3HHeJ_G0017153.1 mouse_genomes_project 10 76727517 76748717 + MGP_C3HHeJ_P0025624 Slc19a1 protein_coding protein_coding MGP_C3HHeJ_T0025258.1 MGP_C3HHeJ_G0017075.1 mouse_genomes_project 10 62319777 62401782 + MGP_C3HHeJ_P0025258 Herc4 protein_coding protein_coding MGP_C3HHeJ_T0025259.1 MGP_C3HHeJ_G0017075.1 mouse_genomes_project 10 62320015 62401771 + MGP_C3HHeJ_P0025259 Herc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024290.1 MGP_C3HHeJ_G0016766.1 mouse_genomes_project 10 6831620 6834768 - MGP_C3HHeJ_P0024290 Gm9930 protein_coding protein_coding MGP_C3HHeJ_T0024393.1 MGP_C3HHeJ_G0016788.1 mouse_genomes_project 10 11850218 11997594 - MGP_C3HHeJ_P0024393 Adgrg6 protein_coding protein_coding MGP_C3HHeJ_T0025236.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62043398 62054908 + Rufy2 protein_coding retained_intron MGP_C3HHeJ_T0025237.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62043414 62071126 + MGP_C3HHeJ_P0025237 Rufy2 protein_coding protein_coding MGP_C3HHeJ_T0025238.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62043417 62081056 + MGP_C3HHeJ_P0025238 Rufy2 protein_coding protein_coding MGP_C3HHeJ_T0025239.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62043427 62084311 + MGP_C3HHeJ_P0025239 Rufy2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025240.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62043437 62071099 + MGP_C3HHeJ_P0025240 Rufy2 protein_coding protein_coding MGP_C3HHeJ_T0025241.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62043468 62068879 + MGP_C3HHeJ_P0025241 Rufy2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025242.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62044603 62053785 + MGP_C3HHeJ_P0025242 Rufy2 protein_coding protein_coding MGP_C3HHeJ_T0025243.1 MGP_C3HHeJ_G0017070.1 mouse_genomes_project 10 62068916 62075283 + Rufy2 protein_coding retained_intron MGP_C3HHeJ_T0012305.1 MGP_C3HHeJ_G0010409.1 mouse_genomes_project 10 42403962 42405863 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012335.1 MGP_C3HHeJ_G0010439.1 mouse_genomes_project 10 119421100 119423728 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009527.1 MGP_C3HHeJ_G0007660.1 mouse_genomes_project 10 87171081 87171214 - Gm25745 miRNA miRNA MGP_C3HHeJ_T0026641.1 MGP_C3HHeJ_G0017421.1 mouse_genomes_project 10 94382718 94386966 + MGP_C3HHeJ_P0026641 Ntn4 protein_coding protein_coding MGP_C3HHeJ_T0026642.1 MGP_C3HHeJ_G0017421.1 mouse_genomes_project 10 94383086 94488278 + MGP_C3HHeJ_P0026642 Ntn4 protein_coding protein_coding MGP_C3HHeJ_T0027168.1 MGP_C3HHeJ_G0017595.1 mouse_genomes_project 10 129972818 129981211 + MGP_C3HHeJ_P0027168 Tac2 protein_coding protein_coding MGP_C3HHeJ_T0027169.1 MGP_C3HHeJ_G0017595.1 mouse_genomes_project 10 129973757 129981211 + MGP_C3HHeJ_P0027169 Tac2 protein_coding protein_coding MGP_C3HHeJ_T0024142.1 MGP_C3HHeJ_G0016734.1 mouse_genomes_project 10 483754 498355 + MGP_C3HHeJ_P0024142 Iyd protein_coding protein_coding MGP_C3HHeJ_T0024143.1 MGP_C3HHeJ_G0016734.1 mouse_genomes_project 10 483802 495588 + Iyd protein_coding retained_intron MGP_C3HHeJ_T0024608.1 MGP_C3HHeJ_G0016866.1 mouse_genomes_project 10 26062186 26589425 + MGP_C3HHeJ_P0024608 Ptprk protein_coding protein_coding MGP_C3HHeJ_T0024609.1 MGP_C3HHeJ_G0016866.1 mouse_genomes_project 10 26062447 26557277 + MGP_C3HHeJ_P0024609 Ptprk protein_coding unknown_likely_coding MGP_C3HHeJ_T0024610.1 MGP_C3HHeJ_G0016866.1 mouse_genomes_project 10 26461341 26557277 + MGP_C3HHeJ_P0024610 Ptprk protein_coding unknown_likely_coding MGP_C3HHeJ_T0024717.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37699347 37851115 + MGP_C3HHeJ_P0024717 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024718.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37700255 37902704 + MGP_C3HHeJ_P0024718 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024719.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37700289 37902695 + MGP_C3HHeJ_P0024719 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024720.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37700294 37901746 + MGP_C3HHeJ_P0024720 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024721.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37751372 37847308 + MGP_C3HHeJ_P0024721 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024722.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37788838 37901678 + MGP_C3HHeJ_P0024722 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024723.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37788948 37901678 + MGP_C3HHeJ_P0024723 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024724.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37847187 37901745 + MGP_C3HHeJ_P0024724 Fyn protein_coding protein_coding MGP_C3HHeJ_T0024725.1 MGP_C3HHeJ_G0016911.1 mouse_genomes_project 10 37869380 37887514 + Fyn protein_coding processed_transcript MGP_C3HHeJ_T0009523.1 MGP_C3HHeJ_G0007656.1 mouse_genomes_project 10 81498573 81498631 - Mir1191b miRNA miRNA MGP_C3HHeJ_T0024141.1 MGP_C3HHeJ_G0016733.1 mouse_genomes_project 10 300200 402630 + MGP_C3HHeJ_P0024141 Ppp1r14c protein_coding protein_coding MGP_C3HHeJ_T0025615.1 MGP_C3HHeJ_G0017152.1 mouse_genomes_project 10 76696844 76706938 + MGP_C3HHeJ_P0025615 Gm10787 protein_coding protein_coding MGP_C3HHeJ_T0025632.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 76993860 77125262 - MGP_C3HHeJ_P0025632 Adarb1 protein_coding protein_coding MGP_C3HHeJ_T0025633.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 76993860 77125257 - MGP_C3HHeJ_P0025633 Adarb1 protein_coding protein_coding MGP_C3HHeJ_T0025634.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 76993861 77125262 - MGP_C3HHeJ_P0025634 Adarb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025635.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 76993861 77125219 - MGP_C3HHeJ_P0025635 Adarb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025636.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 76993861 77125219 - MGP_C3HHeJ_P0025636 Adarb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025637.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 76993862 77125262 - MGP_C3HHeJ_P0025637 Adarb1 protein_coding protein_coding MGP_C3HHeJ_T0025638.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77018837 77125203 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025639.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77018851 77125257 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025640.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77025759 77125230 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025641.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77028306 77124846 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025642.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77028497 77125209 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025643.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77028683 77043130 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025644.1 MGP_C3HHeJ_G0017157.1 mouse_genomes_project 10 77028758 77075231 - Adarb1 protein_coding retained_intron MGP_C3HHeJ_T0025198.1 MGP_C3HHeJ_G0017059.1 mouse_genomes_project 10 61471497 61473331 + MGP_C3HHeJ_P0025198 4930507D05Rik protein_coding protein_coding MGP_C3HHeJ_T0000802.1 MGP_C3HHeJ_G0000743.1 mouse_genomes_project 10 115626976 115627580 + TEC TEC MGP_C3HHeJ_T0009549.1 MGP_C3HHeJ_G0007682.1 mouse_genomes_project 10 128235646 128235719 + Gm22183 miRNA miRNA MGP_C3HHeJ_T0025052.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58867855 58884357 - MGP_C3HHeJ_P0025052 Anapc16 protein_coding protein_coding MGP_C3HHeJ_T0025053.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58868354 58884333 - MGP_C3HHeJ_P0025053 Anapc16 protein_coding protein_coding MGP_C3HHeJ_T0025054.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58868850 58870830 - Anapc16 protein_coding processed_transcript MGP_C3HHeJ_T0025055.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58868869 58884217 - MGP_C3HHeJ_P0025055 Anapc16 protein_coding protein_coding MGP_C3HHeJ_T0025056.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58868925 58884308 - MGP_C3HHeJ_P0025056 Anapc16 protein_coding protein_coding MGP_C3HHeJ_T0025057.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58869032 58883991 - MGP_C3HHeJ_P0025057 Anapc16 protein_coding protein_coding MGP_C3HHeJ_T0025058.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58870812 58871527 - Anapc16 protein_coding retained_intron MGP_C3HHeJ_T0025059.1 MGP_C3HHeJ_G0017024.1 mouse_genomes_project 10 58876403 58879531 - Anapc16 protein_coding retained_intron MGP_C3HHeJ_T0024327.1 MGP_C3HHeJ_G0016775.1 mouse_genomes_project 10 8691804 8810510 + MGP_C3HHeJ_P0024327 Epm2a protein_coding protein_coding MGP_C3HHeJ_T0024328.1 MGP_C3HHeJ_G0016775.1 mouse_genomes_project 10 8691853 8798551 + Epm2a protein_coding processed_transcript MGP_C3HHeJ_T0025167.1 MGP_C3HHeJ_G0017054.1 mouse_genomes_project 10 61192622 61242820 - MGP_C3HHeJ_P0025167 Tspan15 protein_coding protein_coding MGP_C3HHeJ_T0012302.1 MGP_C3HHeJ_G0010406.1 mouse_genomes_project 10 40934853 40935030 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026596.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91781308 91788794 - MGP_C3HHeJ_P0026596 Slc25a3 protein_coding protein_coding MGP_C3HHeJ_T0026597.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91781529 91788738 - MGP_C3HHeJ_P0026597 Slc25a3 protein_coding protein_coding MGP_C3HHeJ_T0026598.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91781529 91788692 - MGP_C3HHeJ_P0026598 Slc25a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026599.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91781542 91788690 - MGP_C3HHeJ_P0026599 Slc25a3 protein_coding protein_coding MGP_C3HHeJ_T0026600.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91781745 91784572 - Slc25a3 protein_coding retained_intron MGP_C3HHeJ_T0026601.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91782907 91785460 - Slc25a3 protein_coding processed_transcript MGP_C3HHeJ_T0026602.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91782933 91786958 - Slc25a3 protein_coding retained_intron MGP_C3HHeJ_T0026603.1 MGP_C3HHeJ_G0017409.1 mouse_genomes_project 10 91784509 91788757 - Slc25a3 protein_coding retained_intron MGP_C3HHeJ_T0027236.1 MGP_C3HHeJ_G0017618.1 mouse_genomes_project 10 130566074 130602545 + MGP_C3HHeJ_P0027236 Stat2 protein_coding protein_coding MGP_C3HHeJ_T0027237.1 MGP_C3HHeJ_G0017618.1 mouse_genomes_project 10 130566074 130602545 + MGP_C3HHeJ_P0027237 Stat2 protein_coding protein_coding MGP_C3HHeJ_T0025101.1 MGP_C3HHeJ_G0017033.1 mouse_genomes_project 10 59677023 59750835 - MGP_C3HHeJ_P0025101 Unc5b protein_coding protein_coding MGP_C3HHeJ_T0099928.1 MGP_C3HHeJ_G0038122.1 mouse_genomes_project 10 19608401 19608510 - Gm23839 snoRNA snoRNA MGP_C3HHeJ_T0025405.1 MGP_C3HHeJ_G0017103.1 mouse_genomes_project 10 70651058 70663600 - MGP_C3HHeJ_P0025405 Tfam protein_coding protein_coding MGP_C3HHeJ_T0025406.1 MGP_C3HHeJ_G0017103.1 mouse_genomes_project 10 70654045 70660980 - Tfam protein_coding processed_transcript MGP_C3HHeJ_T0025407.1 MGP_C3HHeJ_G0017103.1 mouse_genomes_project 10 70654056 70663940 - MGP_C3HHeJ_P0025407 Tfam protein_coding protein_coding MGP_C3HHeJ_T0025408.1 MGP_C3HHeJ_G0017103.1 mouse_genomes_project 10 70654715 70662701 - MGP_C3HHeJ_P0025408 Tfam protein_coding protein_coding MGP_C3HHeJ_T0024660.1 MGP_C3HHeJ_G0016886.1 mouse_genomes_project 10 31630592 31754524 - MGP_C3HHeJ_P0024660 Clvs2 protein_coding protein_coding MGP_C3HHeJ_T0024661.1 MGP_C3HHeJ_G0016886.1 mouse_genomes_project 10 31682368 31753951 - Clvs2 protein_coding processed_transcript MGP_C3HHeJ_T0024662.1 MGP_C3HHeJ_G0016886.1 mouse_genomes_project 10 31724666 31754374 - Clvs2 protein_coding processed_transcript MGP_C3HHeJ_T0024663.1 MGP_C3HHeJ_G0016886.1 mouse_genomes_project 10 31729744 31754377 - MGP_C3HHeJ_P0024663 Clvs2 protein_coding protein_coding MGP_C3HHeJ_T0026745.1 MGP_C3HHeJ_G0017459.1 mouse_genomes_project 10 101491555 101575535 + MGP_C3HHeJ_P0026745 Cep290 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026746.1 MGP_C3HHeJ_G0017459.1 mouse_genomes_project 10 101492206 101576427 + MGP_C3HHeJ_P0026746 Cep290 protein_coding protein_coding MGP_C3HHeJ_T0006012.1 MGP_C3HHeJ_G0005023.1 mouse_genomes_project 10 22324665 22329830 + Gm15271 lincRNA lincRNA MGP_C3HHeJ_T0025102.1 MGP_C3HHeJ_G0017034.1 mouse_genomes_project 10 60030000 60034986 + MGP_C3HHeJ_P0025102 Pcbd1 protein_coding protein_coding MGP_C3HHeJ_T0025877.1 MGP_C3HHeJ_G0017233.1 mouse_genomes_project 10 79888212 79888497 + MGP_C3HHeJ_P0025877 Gm26602 protein_coding protein_coding MGP_C3HHeJ_T0003038.1 MGP_C3HHeJ_G0002830.1 mouse_genomes_project 10 129909536 129911182 + Gm16229 antisense antisense MGP_C3HHeJ_T0027206.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483397 130502805 + MGP_C3HHeJ_P0027206 Gls2 protein_coding protein_coding MGP_C3HHeJ_T0027207.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483571 130492202 + MGP_C3HHeJ_P0027207 Gls2 protein_coding protein_coding MGP_C3HHeJ_T0027208.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483653 130502800 + MGP_C3HHeJ_P0027208 Gls2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027209.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483656 130492579 + Gls2 protein_coding processed_transcript MGP_C3HHeJ_T0027210.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483660 130502870 + MGP_C3HHeJ_P0027210 Gls2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027211.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483682 130502800 + MGP_C3HHeJ_P0027211 Gls2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027212.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130483740 130492737 + Gls2 protein_coding retained_intron MGP_C3HHeJ_T0027213.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130496121 130497057 + Gls2 protein_coding retained_intron MGP_C3HHeJ_T0027214.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130496548 130499871 + Gls2 protein_coding processed_transcript MGP_C3HHeJ_T0027215.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130496629 130502808 + Gls2 protein_coding retained_intron MGP_C3HHeJ_T0027216.1 MGP_C3HHeJ_G0017612.1 mouse_genomes_project 10 130499792 130502596 + MGP_C3HHeJ_P0027216 Gls2 protein_coding protein_coding MGP_C3HHeJ_T0024502.1 MGP_C3HHeJ_G0016823.1 mouse_genomes_project 10 19324480 19353927 + MGP_C3HHeJ_P0024502 1700020N01Rik protein_coding protein_coding MGP_C3HHeJ_T0024503.1 MGP_C3HHeJ_G0016823.1 mouse_genomes_project 10 19347655 19353316 + 1700020N01Rik protein_coding processed_transcript MGP_C3HHeJ_T0026536.1 MGP_C3HHeJ_G0017400.1 mouse_genomes_project 10 89976566 90015655 - MGP_C3HHeJ_P0026536 Gas2l3 protein_coding protein_coding MGP_C3HHeJ_T0026537.1 MGP_C3HHeJ_G0017400.1 mouse_genomes_project 10 89976566 90015655 - MGP_C3HHeJ_P0026537 Gas2l3 protein_coding protein_coding MGP_C3HHeJ_T0024283.1 MGP_C3HHeJ_G0016763.1 mouse_genomes_project 10 5117372 5170153 - MGP_C3HHeJ_P0024283 Tab2 protein_coding protein_coding MGP_C3HHeJ_T0024284.1 MGP_C3HHeJ_G0016763.1 mouse_genomes_project 10 5119048 5122187 - Tab2 protein_coding retained_intron MGP_C3HHeJ_T0024285.1 MGP_C3HHeJ_G0016763.1 mouse_genomes_project 10 5119158 5123173 - Tab2 protein_coding retained_intron MGP_C3HHeJ_T0024286.1 MGP_C3HHeJ_G0016763.1 mouse_genomes_project 10 5123178 5144939 - MGP_C3HHeJ_P0024286 Tab2 protein_coding protein_coding MGP_C3HHeJ_T0024287.1 MGP_C3HHeJ_G0016763.1 mouse_genomes_project 10 5131059 5135960 - MGP_C3HHeJ_P0024287 Tab2 protein_coding protein_coding MGP_C3HHeJ_T0026858.1 MGP_C3HHeJ_G0017499.1 mouse_genomes_project 10 116977222 117004358 - MGP_C3HHeJ_P0026858 Rab21 protein_coding protein_coding MGP_C3HHeJ_T0025131.1 MGP_C3HHeJ_G0017045.1 mouse_genomes_project 10 60623132 60650208 + MGP_C3HHeJ_P0025131 Ppa1 protein_coding protein_coding MGP_C3HHeJ_T0025132.1 MGP_C3HHeJ_G0017045.1 mouse_genomes_project 10 60623201 60627424 + Ppa1 protein_coding retained_intron MGP_C3HHeJ_T0025133.1 MGP_C3HHeJ_G0017045.1 mouse_genomes_project 10 60638703 60641441 + Ppa1 protein_coding processed_transcript MGP_C3HHeJ_T0025134.1 MGP_C3HHeJ_G0017045.1 mouse_genomes_project 10 60639704 60641621 + Ppa1 protein_coding retained_intron MGP_C3HHeJ_T0098751.1 MGP_C3HHeJ_G0036945.1 mouse_genomes_project 10 131293983 131294083 + Gm25494 snRNA snRNA MGP_C3HHeJ_T0026713.1 MGP_C3HHeJ_G0017442.1 mouse_genomes_project 10 98484245 98493293 + MGP_C3HHeJ_P0026713 Lum protein_coding protein_coding MGP_C3HHeJ_T0025155.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61109858 61113254 - MGP_C3HHeJ_P0025155 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025156.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61110413 61113149 - MGP_C3HHeJ_P0025156 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025157.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61110413 61113172 - MGP_C3HHeJ_P0025157 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025158.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61110413 61113254 - MGP_C3HHeJ_P0025158 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025159.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61110415 61113217 - MGP_C3HHeJ_P0025159 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025160.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61111038 61144717 - MGP_C3HHeJ_P0025160 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025161.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61111120 61137858 - MGP_C3HHeJ_P0025161 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025162.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61111121 61147643 - MGP_C3HHeJ_P0025162 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025163.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61111123 61112700 - MGP_C3HHeJ_P0025163 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025164.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61112150 61147647 - MGP_C3HHeJ_P0025164 2010107G23Rik protein_coding protein_coding MGP_C3HHeJ_T0025166.1 MGP_C3HHeJ_G0017052.1 mouse_genomes_project 10 61137672 61147657 - 2010107G23Rik protein_coding processed_transcript MGP_C3HHeJ_T0002942.1 MGP_C3HHeJ_G0002758.1 mouse_genomes_project 10 4984485 4985572 + B430219N15Rik antisense antisense MGP_C3HHeJ_T0002943.1 MGP_C3HHeJ_G0002758.1 mouse_genomes_project 10 4984550 4985643 + B430219N15Rik antisense antisense MGP_C3HHeJ_T0027134.1 MGP_C3HHeJ_G0017586.1 mouse_genomes_project 10 129735399 129742797 + MGP_C3HHeJ_P0027134 Stac3 protein_coding protein_coding MGP_C3HHeJ_T0027135.1 MGP_C3HHeJ_G0017586.1 mouse_genomes_project 10 129735407 129736552 + MGP_C3HHeJ_P0027135 Stac3 protein_coding protein_coding MGP_C3HHeJ_T0027136.1 MGP_C3HHeJ_G0017586.1 mouse_genomes_project 10 129735430 129742789 + MGP_C3HHeJ_P0027136 Stac3 protein_coding protein_coding MGP_C3HHeJ_T0027137.1 MGP_C3HHeJ_G0017586.1 mouse_genomes_project 10 129738204 129741462 + Stac3 protein_coding retained_intron MGP_C3HHeJ_T0027138.1 MGP_C3HHeJ_G0017586.1 mouse_genomes_project 10 129741198 129741966 + Stac3 protein_coding retained_intron MGP_C3HHeJ_T0024810.1 MGP_C3HHeJ_G0016939.1 mouse_genomes_project 10 40091716 40142259 - MGP_C3HHeJ_P0024810 protein_coding protein_coding MGP_C3HHeJ_T0026255.1 MGP_C3HHeJ_G0017326.1 mouse_genomes_project 10 81588745 81594665 - Gna15 protein_coding retained_intron MGP_C3HHeJ_T0026256.1 MGP_C3HHeJ_G0017326.1 mouse_genomes_project 10 81588752 81611617 - MGP_C3HHeJ_P0026256 Gna15 protein_coding protein_coding MGP_C3HHeJ_T0026257.1 MGP_C3HHeJ_G0017326.1 mouse_genomes_project 10 81589526 81599131 - Gna15 protein_coding retained_intron MGP_C3HHeJ_T0026193.1 MGP_C3HHeJ_G0017313.1 mouse_genomes_project 10 81398169 81403318 + MGP_C3HHeJ_P0026193 Cactin protein_coding protein_coding MGP_C3HHeJ_T0026722.1 MGP_C3HHeJ_G0017449.1 mouse_genomes_project 10 100075874 100170830 + MGP_C3HHeJ_P0026722 Poc1b protein_coding protein_coding MGP_C3HHeJ_T0026723.1 MGP_C3HHeJ_G0017449.1 mouse_genomes_project 10 100075920 100169894 + MGP_C3HHeJ_P0026723 Poc1b protein_coding protein_coding MGP_C3HHeJ_T0026724.1 MGP_C3HHeJ_G0017449.1 mouse_genomes_project 10 100075941 100170916 + MGP_C3HHeJ_P0026724 Poc1b protein_coding protein_coding MGP_C3HHeJ_T0026727.1 MGP_C3HHeJ_G0017449.1 mouse_genomes_project 10 100099108 100164504 + MGP_C3HHeJ_P0026727 Poc1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026728.1 MGP_C3HHeJ_G0017449.1 mouse_genomes_project 10 100141469 100169870 + Poc1b protein_coding processed_transcript MGP_C3HHeJ_T0026729.1 MGP_C3HHeJ_G0017449.1 mouse_genomes_project 10 100164606 100169692 + Poc1b protein_coding processed_transcript MGP_C3HHeJ_T0025013.1 MGP_C3HHeJ_G0017012.1 mouse_genomes_project 10 57532731 57537336 - MGP_C3HHeJ_P0025013 Gm17542 protein_coding protein_coding MGP_C3HHeJ_T0009488.1 MGP_C3HHeJ_G0007621.1 mouse_genomes_project 10 24269557 24269683 - Gm27754 miRNA miRNA MGP_C3HHeJ_T0012339.1 MGP_C3HHeJ_G0010443.1 mouse_genomes_project 10 129525691 129528561 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024674.1 MGP_C3HHeJ_G0016895.1 mouse_genomes_project 10 32243732 32248900 - MGP_C3HHeJ_P0024674 Fam26e protein_coding protein_coding MGP_C3HHeJ_T0027079.1 MGP_C3HHeJ_G0017571.1 mouse_genomes_project 10 129366628 129373836 + MGP_C3HHeJ_P0027079 B4galnt1 protein_coding protein_coding MGP_C3HHeJ_T0024456.1 MGP_C3HHeJ_G0016809.1 mouse_genomes_project 10 17380334 17423455 + MGP_C3HHeJ_P0024456 Il20ra protein_coding protein_coding MGP_C3HHeJ_T0027375.1 MGP_C3HHeJ_G0017689.1 mouse_genomes_project 10 132205935 132206895 - MGP_C3HHeJ_P0027375 Olfr811 protein_coding protein_coding MGP_C3HHeJ_T0009511.1 MGP_C3HHeJ_G0007644.1 mouse_genomes_project 10 78297868 78297931 - Mir6908 miRNA miRNA MGP_C3HHeJ_T0027352.1 MGP_C3HHeJ_G0017675.1 mouse_genomes_project 10 131912042 131912981 + MGP_C3HHeJ_P0027352 Olfr791 protein_coding protein_coding MGP_C3HHeJ_T0026633.1 MGP_C3HHeJ_G0017417.1 mouse_genomes_project 10 94266612 94283433 - MGP_C3HHeJ_P0026633 Amdhd1 protein_coding protein_coding MGP_C3HHeJ_T0009543.1 MGP_C3HHeJ_G0007676.1 mouse_genomes_project 10 122459507 122459627 - Mir763 miRNA miRNA MGP_C3HHeJ_T0012304.1 MGP_C3HHeJ_G0010408.1 mouse_genomes_project 10 41933369 41933802 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009507.1 MGP_C3HHeJ_G0007640.1 mouse_genomes_project 10 77355654 77355738 + Mir1930 miRNA miRNA MGP_C3HHeJ_T0025893.1 MGP_C3HHeJ_G0017239.1 mouse_genomes_project 10 79968344 79976871 + MGP_C3HHeJ_P0025893 Cnn2 protein_coding protein_coding MGP_C3HHeJ_T0025894.1 MGP_C3HHeJ_G0017239.1 mouse_genomes_project 10 79968383 79975493 + MGP_C3HHeJ_P0025894 Cnn2 protein_coding protein_coding MGP_C3HHeJ_T0012286.1 MGP_C3HHeJ_G0010390.1 mouse_genomes_project 10 15425144 15426084 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026409.1 MGP_C3HHeJ_G0017368.1 mouse_genomes_project 10 86301671 86318931 + MGP_C3HHeJ_P0026409 Pwp1 protein_coding protein_coding MGP_C3HHeJ_T0026410.1 MGP_C3HHeJ_G0017368.1 mouse_genomes_project 10 86301724 86314523 + Pwp1 protein_coding retained_intron MGP_C3HHeJ_T0026411.1 MGP_C3HHeJ_G0017368.1 mouse_genomes_project 10 86301746 86311932 + MGP_C3HHeJ_P0026411 Pwp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026412.1 MGP_C3HHeJ_G0017368.1 mouse_genomes_project 10 86306094 86314322 + Pwp1 protein_coding retained_intron MGP_C3HHeJ_T0027238.1 MGP_C3HHeJ_G0017619.1 mouse_genomes_project 10 130606002 130607946 - MGP_C3HHeJ_P0027238 Il23a protein_coding protein_coding MGP_C3HHeJ_T0025230.1 MGP_C3HHeJ_G0017069.1 mouse_genomes_project 10 62008995 62037363 + MGP_C3HHeJ_P0025230 Dna2 protein_coding protein_coding MGP_C3HHeJ_T0025231.1 MGP_C3HHeJ_G0017069.1 mouse_genomes_project 10 62009044 62036945 + MGP_C3HHeJ_P0025231 Dna2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025232.1 MGP_C3HHeJ_G0017069.1 mouse_genomes_project 10 62009049 62011702 + Dna2 protein_coding retained_intron MGP_C3HHeJ_T0025233.1 MGP_C3HHeJ_G0017069.1 mouse_genomes_project 10 62009079 62028006 + Dna2 protein_coding retained_intron MGP_C3HHeJ_T0025234.1 MGP_C3HHeJ_G0017069.1 mouse_genomes_project 10 62027551 62037362 + Dna2 protein_coding retained_intron MGP_C3HHeJ_T0025235.1 MGP_C3HHeJ_G0017069.1 mouse_genomes_project 10 62027846 62037357 + Dna2 protein_coding retained_intron MGP_C3HHeJ_T0025573.1 MGP_C3HHeJ_G0017140.1 mouse_genomes_project 10 75903980 75911276 + MGP_C3HHeJ_P0025573 S100b protein_coding protein_coding MGP_C3HHeJ_T0025775.1 MGP_C3HHeJ_G0017207.1 mouse_genomes_project 10 79483150 79490465 - MGP_C3HHeJ_P0025775 Plpp2 protein_coding protein_coding MGP_C3HHeJ_T0025776.1 MGP_C3HHeJ_G0017207.1 mouse_genomes_project 10 79483151 79490532 - Plpp2 protein_coding processed_transcript MGP_C3HHeJ_T0025777.1 MGP_C3HHeJ_G0017207.1 mouse_genomes_project 10 79484208 79490562 - MGP_C3HHeJ_P0025777 Plpp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026523.1 MGP_C3HHeJ_G0017398.1 mouse_genomes_project 10 89433853 89479423 + MGP_C3HHeJ_P0026523 Slc5a8 protein_coding protein_coding MGP_C3HHeJ_T0099955.1 MGP_C3HHeJ_G0038149.1 mouse_genomes_project 10 71985126 71985259 + Gm24984 snoRNA snoRNA MGP_C3HHeJ_T0002968.1 MGP_C3HHeJ_G0002778.1 mouse_genomes_project 10 59854141 59863729 + Gm26947 antisense antisense MGP_C3HHeJ_T0026792.1 MGP_C3HHeJ_G0017471.1 mouse_genomes_project 10 107677130 108160889 + MGP_C3HHeJ_P0026792 Ppfia2 protein_coding protein_coding MGP_C3HHeJ_T0026793.1 MGP_C3HHeJ_G0017471.1 mouse_genomes_project 10 107677166 107995327 + MGP_C3HHeJ_P0026793 Ppfia2 protein_coding protein_coding MGP_C3HHeJ_T0026805.1 MGP_C3HHeJ_G0017479.1 mouse_genomes_project 10 109624258 109709350 + MGP_C3HHeJ_P0026805 Pawr protein_coding protein_coding MGP_C3HHeJ_T0012336.1 MGP_C3HHeJ_G0010440.1 mouse_genomes_project 10 120812339 120813247 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025808.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703067 79714099 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025809.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703071 79706357 - MGP_C3HHeJ_P0025809 Polrmt protein_coding protein_coding MGP_C3HHeJ_T0025810.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703072 79714099 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025811.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703073 79703766 - Polrmt protein_coding processed_transcript MGP_C3HHeJ_T0025812.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703074 79714107 - MGP_C3HHeJ_P0025812 Polrmt protein_coding protein_coding MGP_C3HHeJ_T0025813.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703074 79714105 - MGP_C3HHeJ_P0025813 Polrmt protein_coding protein_coding MGP_C3HHeJ_T0025814.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703116 79703751 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025815.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703117 79704696 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025816.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703118 79714097 - MGP_C3HHeJ_P0025816 Polrmt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025817.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703151 79704669 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025818.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79703521 79705614 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025819.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79705070 79706358 - Polrmt protein_coding retained_intron MGP_C3HHeJ_T0025820.1 MGP_C3HHeJ_G0017219.1 mouse_genomes_project 10 79710649 79714099 - Polrmt protein_coding processed_transcript MGP_C3HHeJ_T0024325.1 MGP_C3HHeJ_G0016774.1 mouse_genomes_project 10 8627439 8645074 + MGP_C3HHeJ_P0024325 Fbxo30 protein_coding protein_coding MGP_C3HHeJ_T0024326.1 MGP_C3HHeJ_G0016774.1 mouse_genomes_project 10 8627696 8642540 + MGP_C3HHeJ_P0024326 Fbxo30 protein_coding protein_coding MGP_C3HHeJ_T0024971.1 MGP_C3HHeJ_G0016999.1 mouse_genomes_project 10 56604769 56621716 - MGP_C3HHeJ_P0024971 Serinc1 protein_coding protein_coding MGP_C3HHeJ_T0024972.1 MGP_C3HHeJ_G0016999.1 mouse_genomes_project 10 56612024 56621614 - MGP_C3HHeJ_P0024972 Serinc1 protein_coding protein_coding MGP_C3HHeJ_T0024973.1 MGP_C3HHeJ_G0016999.1 mouse_genomes_project 10 56612173 56621596 - MGP_C3HHeJ_P0024973 Serinc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024974.1 MGP_C3HHeJ_G0016999.1 mouse_genomes_project 10 56614213 56621663 - Serinc1 protein_coding retained_intron MGP_C3HHeJ_T0024975.1 MGP_C3HHeJ_G0016999.1 mouse_genomes_project 10 56614219 56621595 - Serinc1 protein_coding retained_intron MGP_C3HHeJ_T0011189.1 MGP_C3HHeJ_G0009322.1 mouse_genomes_project 10 92821170 92821279 - Gm27419 misc_RNA misc_RNA MGP_C3HHeJ_T0024531.1 MGP_C3HHeJ_G0016833.1 mouse_genomes_project 10 21643604 21677829 + MGP_C3HHeJ_P0024531 Slc18b1 protein_coding protein_coding MGP_C3HHeJ_T0024532.1 MGP_C3HHeJ_G0016833.1 mouse_genomes_project 10 21643670 21652515 + MGP_C3HHeJ_P0024532 Slc18b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024533.1 MGP_C3HHeJ_G0016833.1 mouse_genomes_project 10 21643818 21652467 + MGP_C3HHeJ_P0024533 Slc18b1 protein_coding protein_coding MGP_C3HHeJ_T0024534.1 MGP_C3HHeJ_G0016833.1 mouse_genomes_project 10 21652531 21668029 + MGP_C3HHeJ_P0024534 Slc18b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024535.1 MGP_C3HHeJ_G0016833.1 mouse_genomes_project 10 21673480 21676900 + Slc18b1 protein_coding retained_intron MGP_C3HHeJ_T0025823.1 MGP_C3HHeJ_G0017222.1 mouse_genomes_project 10 79747113 79752468 + MGP_C3HHeJ_P0025823 Fstl3 protein_coding protein_coding MGP_C3HHeJ_T0025824.1 MGP_C3HHeJ_G0017222.1 mouse_genomes_project 10 79747133 79748931 + Fstl3 protein_coding retained_intron MGP_C3HHeJ_T0025825.1 MGP_C3HHeJ_G0017222.1 mouse_genomes_project 10 79750418 79752445 + Fstl3 protein_coding processed_transcript MGP_C3HHeJ_T0099978.1 MGP_C3HHeJ_G0038172.1 mouse_genomes_project 10 130372235 130372309 + Snord59a snoRNA snoRNA MGP_C3HHeJ_T0027247.1 MGP_C3HHeJ_G0017625.1 mouse_genomes_project 10 130709189 130714506 - MGP_C3HHeJ_P0027247 Slc39a5 protein_coding protein_coding MGP_C3HHeJ_T0027248.1 MGP_C3HHeJ_G0017625.1 mouse_genomes_project 10 130709189 130713746 - MGP_C3HHeJ_P0027248 Slc39a5 protein_coding protein_coding MGP_C3HHeJ_T0025014.1 MGP_C3HHeJ_G0017013.1 mouse_genomes_project 10 57630763 57882517 + MGP_C3HHeJ_P0025014 Sh3rf3 protein_coding protein_coding MGP_C3HHeJ_T0025015.1 MGP_C3HHeJ_G0017013.1 mouse_genomes_project 10 57630862 57976014 + MGP_C3HHeJ_P0025015 Sh3rf3 protein_coding protein_coding MGP_C3HHeJ_T0025016.1 MGP_C3HHeJ_G0017013.1 mouse_genomes_project 10 57631463 57839160 + Sh3rf3 protein_coding retained_intron MGP_C3HHeJ_T0025017.1 MGP_C3HHeJ_G0017013.1 mouse_genomes_project 10 57901913 57941853 + Sh3rf3 protein_coding retained_intron MGP_C3HHeJ_T0025018.1 MGP_C3HHeJ_G0017013.1 mouse_genomes_project 10 57916307 57941331 + Sh3rf3 protein_coding processed_transcript MGP_C3HHeJ_T0027076.1 MGP_C3HHeJ_G0017569.1 mouse_genomes_project 10 129272423 129286651 + MGP_C3HHeJ_P0027076 Agap2 protein_coding protein_coding MGP_C3HHeJ_T0016911.1 MGP_C3HHeJ_G0014903.1 mouse_genomes_project 10 129501076 129502241 + Gm20492 processed_transcript processed_transcript MGP_C3HHeJ_T0025973.1 MGP_C3HHeJ_G0017253.1 mouse_genomes_project 10 80240829 80248502 + MGP_C3HHeJ_P0025973 Ndufs7 protein_coding protein_coding MGP_C3HHeJ_T0025974.1 MGP_C3HHeJ_G0017253.1 mouse_genomes_project 10 80241157 80245122 + Ndufs7 protein_coding retained_intron MGP_C3HHeJ_T0025975.1 MGP_C3HHeJ_G0017253.1 mouse_genomes_project 10 80241160 80248501 + MGP_C3HHeJ_P0025975 Ndufs7 protein_coding protein_coding MGP_C3HHeJ_T0025976.1 MGP_C3HHeJ_G0017253.1 mouse_genomes_project 10 80241168 80245650 + Ndufs7 protein_coding retained_intron MGP_C3HHeJ_T0025977.1 MGP_C3HHeJ_G0017253.1 mouse_genomes_project 10 80241193 80248503 + Ndufs7 protein_coding processed_transcript MGP_C3HHeJ_T0025978.1 MGP_C3HHeJ_G0017253.1 mouse_genomes_project 10 80245023 80246849 + Ndufs7 protein_coding retained_intron MGP_C3HHeJ_T0025565.1 MGP_C3HHeJ_G0017138.1 mouse_genomes_project 10 75791259 75832930 + MGP_C3HHeJ_P0025565 Slc5a4a protein_coding protein_coding MGP_C3HHeJ_T0027062.1 MGP_C3HHeJ_G0017565.1 mouse_genomes_project 10 129239082 129243802 + MGP_C3HHeJ_P0027062 Cyp27b1 protein_coding protein_coding MGP_C3HHeJ_T0027063.1 MGP_C3HHeJ_G0017565.1 mouse_genomes_project 10 129239082 129243839 + MGP_C3HHeJ_P0027063 Cyp27b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027064.1 MGP_C3HHeJ_G0017565.1 mouse_genomes_project 10 129239503 129240699 + Cyp27b1 protein_coding processed_transcript MGP_C3HHeJ_T0024575.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23084042 23154954 - Akap7 protein_coding processed_transcript MGP_C3HHeJ_T0024576.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23084042 23116643 - MGP_C3HHeJ_P0024576 Akap7 protein_coding protein_coding MGP_C3HHeJ_T0024577.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23085069 23217485 - MGP_C3HHeJ_P0024577 Akap7 protein_coding protein_coding MGP_C3HHeJ_T0024578.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23133421 23206649 - MGP_C3HHeJ_P0024578 Akap7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024579.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23184600 23214417 - MGP_C3HHeJ_P0024579 Akap7 protein_coding protein_coding MGP_C3HHeJ_T0024580.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23196342 23217428 - MGP_C3HHeJ_P0024580 Akap7 protein_coding protein_coding MGP_C3HHeJ_T0024581.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23200934 23215389 - MGP_C3HHeJ_P0024581 Akap7 protein_coding protein_coding MGP_C3HHeJ_T0024582.1 MGP_C3HHeJ_G0016857.1 mouse_genomes_project 10 23201035 23226826 - MGP_C3HHeJ_P0024582 Akap7 protein_coding protein_coding MGP_C3HHeJ_T0024524.1 MGP_C3HHeJ_G0016829.1 mouse_genomes_project 10 20568771 20569634 - Tbpl1 protein_coding processed_transcript MGP_C3HHeJ_T0024525.1 MGP_C3HHeJ_G0016829.1 mouse_genomes_project 10 20569064 20578964 - MGP_C3HHeJ_P0024525 Tbpl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024526.1 MGP_C3HHeJ_G0016829.1 mouse_genomes_project 10 20575029 20595177 - Tbpl1 protein_coding retained_intron MGP_C3HHeJ_T0025998.1 MGP_C3HHeJ_G0017259.1 mouse_genomes_project 10 80315942 80327032 - Pcsk4 protein_coding retained_intron MGP_C3HHeJ_T0025999.1 MGP_C3HHeJ_G0017259.1 mouse_genomes_project 10 80315942 80327034 - MGP_C3HHeJ_P0025999 Pcsk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026000.1 MGP_C3HHeJ_G0017259.1 mouse_genomes_project 10 80315942 80327077 - MGP_C3HHeJ_P0026000 Pcsk4 protein_coding protein_coding MGP_C3HHeJ_T0026001.1 MGP_C3HHeJ_G0017259.1 mouse_genomes_project 10 80315946 80317787 - Pcsk4 protein_coding retained_intron MGP_C3HHeJ_T0026002.1 MGP_C3HHeJ_G0017259.1 mouse_genomes_project 10 80315946 80317786 - Pcsk4 protein_coding retained_intron MGP_C3HHeJ_T0026003.1 MGP_C3HHeJ_G0017259.1 mouse_genomes_project 10 80316781 80326978 - MGP_C3HHeJ_P0026003 Pcsk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025660.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77320389 77355974 + MGP_C3HHeJ_P0025660 Sumo3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025661.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77320401 77330754 + MGP_C3HHeJ_P0025661 Sumo3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025662.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77320417 77330351 + MGP_C3HHeJ_P0025662 Sumo3 protein_coding protein_coding MGP_C3HHeJ_T0025663.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77320417 77330687 + MGP_C3HHeJ_P0025663 Sumo3 protein_coding protein_coding MGP_C3HHeJ_T0025664.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77320513 77332379 + MGP_C3HHeJ_P0025664 Sumo3 protein_coding protein_coding MGP_C3HHeJ_T0025665.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77320763 77331466 + MGP_C3HHeJ_P0025665 Sumo3 protein_coding protein_coding MGP_C3HHeJ_T0025666.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77323913 77330942 + MGP_C3HHeJ_P0025666 Sumo3 protein_coding protein_coding MGP_C3HHeJ_T0025667.1 MGP_C3HHeJ_G0017161.1 mouse_genomes_project 10 77329176 77330104 + Sumo3 protein_coding processed_transcript MGP_C3HHeJ_T0026116.1 MGP_C3HHeJ_G0017294.1 mouse_genomes_project 10 81059896 81065711 - MGP_C3HHeJ_P0026116 Diras1 protein_coding protein_coding MGP_C3HHeJ_T0026117.1 MGP_C3HHeJ_G0017294.1 mouse_genomes_project 10 81062398 81065964 - MGP_C3HHeJ_P0026117 Diras1 protein_coding protein_coding MGP_C3HHeJ_T0026056.1 MGP_C3HHeJ_G0017271.1 mouse_genomes_project 10 80598412 80606728 - MGP_C3HHeJ_P0026056 Abhd17a protein_coding protein_coding MGP_C3HHeJ_T0026057.1 MGP_C3HHeJ_G0017271.1 mouse_genomes_project 10 80598413 80606711 - MGP_C3HHeJ_P0026057 Abhd17a protein_coding protein_coding MGP_C3HHeJ_T0026058.1 MGP_C3HHeJ_G0017271.1 mouse_genomes_project 10 80598414 80601383 - MGP_C3HHeJ_P0026058 Abhd17a protein_coding protein_coding MGP_C3HHeJ_T0026059.1 MGP_C3HHeJ_G0017271.1 mouse_genomes_project 10 80601437 80606702 - MGP_C3HHeJ_P0026059 Abhd17a protein_coding protein_coding MGP_C3HHeJ_T0006074.1 MGP_C3HHeJ_G0005064.1 mouse_genomes_project 10 104184690 104185553 - Gm17028 lincRNA lincRNA MGP_C3HHeJ_T0024944.1 MGP_C3HHeJ_G0016986.1 mouse_genomes_project 10 51558687 51996510 + MGP_C3HHeJ_P0024944 Slc35f1 protein_coding protein_coding MGP_C3HHeJ_T0006089.1 MGP_C3HHeJ_G0005075.1 mouse_genomes_project 10 130523781 130525972 - Gm26847 lincRNA lincRNA MGP_C3HHeJ_T0098749.1 MGP_C3HHeJ_G0036943.1 mouse_genomes_project 10 129635203 129635312 - Gm23819 snRNA snRNA MGP_C3HHeJ_T0025301.1 MGP_C3HHeJ_G0017086.1 mouse_genomes_project 10 66831017 66835463 - MGP_C3HHeJ_P0025301 Ado protein_coding protein_coding MGP_C3HHeJ_T0024441.1 MGP_C3HHeJ_G0016804.1 mouse_genomes_project 10 16659047 16673540 - MGP_C3HHeJ_P0024441 Tnfaip3 protein_coding protein_coding MGP_C3HHeJ_T0024442.1 MGP_C3HHeJ_G0016804.1 mouse_genomes_project 10 16659050 16670100 - MGP_C3HHeJ_P0024442 Tnfaip3 protein_coding protein_coding MGP_C3HHeJ_T0024443.1 MGP_C3HHeJ_G0016804.1 mouse_genomes_project 10 16659066 16673506 - Tnfaip3 protein_coding retained_intron MGP_C3HHeJ_T0024444.1 MGP_C3HHeJ_G0016804.1 mouse_genomes_project 10 16665404 16666979 - Tnfaip3 protein_coding retained_intron MGP_C3HHeJ_T0024445.1 MGP_C3HHeJ_G0016804.1 mouse_genomes_project 10 16666399 16673787 - MGP_C3HHeJ_P0024445 Tnfaip3 protein_coding protein_coding MGP_C3HHeJ_T0024446.1 MGP_C3HHeJ_G0016804.1 mouse_genomes_project 10 16669652 16672711 - MGP_C3HHeJ_P0024446 Tnfaip3 protein_coding protein_coding MGP_C3HHeJ_T0011194.1 MGP_C3HHeJ_G0009327.1 mouse_genomes_project 10 116940693 116940999 - Gm22794 misc_RNA misc_RNA MGP_C3HHeJ_T0026357.1 MGP_C3HHeJ_G0017350.1 mouse_genomes_project 10 83655567 83664887 + MGP_C3HHeJ_P0026357 D10Wsu102e protein_coding protein_coding MGP_C3HHeJ_T0026623.1 MGP_C3HHeJ_G0017413.1 mouse_genomes_project 10 93878371 93962167 + MGP_C3HHeJ_P0026623 Cdk17 protein_coding protein_coding MGP_C3HHeJ_T0097981.1 MGP_C3HHeJ_G0036193.1 mouse_genomes_project 10 78159874 78159993 + n-R5s77 rRNA rRNA MGP_C3HHeJ_T0099976.1 MGP_C3HHeJ_G0038170.1 mouse_genomes_project 10 129009988 129010126 - Gm24179 snoRNA snoRNA MGP_C3HHeJ_T0027278.1 MGP_C3HHeJ_G0017634.1 mouse_genomes_project 10 130877812 130885979 - MGP_C3HHeJ_P0027278 Pa2g4 protein_coding protein_coding MGP_C3HHeJ_T0027279.1 MGP_C3HHeJ_G0017634.1 mouse_genomes_project 10 130879484 130885872 - MGP_C3HHeJ_P0027279 Pa2g4 protein_coding protein_coding MGP_C3HHeJ_T0027280.1 MGP_C3HHeJ_G0017634.1 mouse_genomes_project 10 130883196 130885914 - Pa2g4 protein_coding retained_intron MGP_C3HHeJ_T0098714.1 MGP_C3HHeJ_G0036908.1 mouse_genomes_project 10 56232977 56233077 + Gm24285 snRNA snRNA MGP_C3HHeJ_T0002980.1 MGP_C3HHeJ_G0002787.1 mouse_genomes_project 10 75543176 75547203 - Gm867 antisense antisense MGP_C3HHeJ_T0024897.1 MGP_C3HHeJ_G0016967.1 mouse_genomes_project 10 43703629 43795071 + MGP_C3HHeJ_P0024897 Prep protein_coding protein_coding MGP_C3HHeJ_T0024989.1 MGP_C3HHeJ_G0017002.1 mouse_genomes_project 10 56892492 56901359 + MGP_C3HHeJ_P0024989 Smpdl3a protein_coding protein_coding MGP_C3HHeJ_T0024990.1 MGP_C3HHeJ_G0017002.1 mouse_genomes_project 10 56892531 56911166 + MGP_C3HHeJ_P0024990 Smpdl3a protein_coding protein_coding MGP_C3HHeJ_T0024991.1 MGP_C3HHeJ_G0017002.1 mouse_genomes_project 10 56892725 56906297 + Smpdl3a protein_coding processed_transcript MGP_C3HHeJ_T0024413.1 MGP_C3HHeJ_G0016795.1 mouse_genomes_project 10 15644586 15657780 - MGP_C3HHeJ_P0024413 Abracl protein_coding protein_coding MGP_C3HHeJ_T0027005.1 MGP_C3HHeJ_G0017547.1 mouse_genomes_project 10 123673021 123713517 - MGP_C3HHeJ_P0027005 Xpot protein_coding unknown_likely_coding MGP_C3HHeJ_T0027006.1 MGP_C3HHeJ_G0017547.1 mouse_genomes_project 10 123673028 123713435 - MGP_C3HHeJ_P0027006 Xpot protein_coding protein_coding MGP_C3HHeJ_T0098339.1 MGP_C3HHeJ_G0036550.1 mouse_genomes_project 10 80604348 80606177 - Gm29093 sense_intronic sense_intronic MGP_C3HHeJ_T0097977.1 MGP_C3HHeJ_G0036189.1 mouse_genomes_project 10 28751332 28751426 - Gm24189 rRNA rRNA MGP_C3HHeJ_T0012284.1 MGP_C3HHeJ_G0010388.1 mouse_genomes_project 10 8735638 8736367 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003040.1 MGP_C3HHeJ_G0002832.1 mouse_genomes_project 10 130705092 130708819 - Gm17201 antisense antisense MGP_C3HHeJ_T0025544.1 MGP_C3HHeJ_G0017128.1 mouse_genomes_project 10 75429653 75432690 - MGP_C3HHeJ_P0025544 Gstt2 protein_coding protein_coding MGP_C3HHeJ_T0024140.1 MGP_C3HHeJ_G0016732.1 mouse_genomes_project 10 182490 193082 - MGP_C3HHeJ_P0024140 H60c protein_coding protein_coding MGP_C3HHeJ_T0025830.1 MGP_C3HHeJ_G0017224.1 mouse_genomes_project 10 79763485 79790814 + MGP_C3HHeJ_P0025830 Palm protein_coding protein_coding MGP_C3HHeJ_T0025831.1 MGP_C3HHeJ_G0017224.1 mouse_genomes_project 10 79763485 79790814 + MGP_C3HHeJ_P0025831 Palm protein_coding protein_coding MGP_C3HHeJ_T0012315.1 MGP_C3HHeJ_G0010419.1 mouse_genomes_project 10 71418840 71419645 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024987.1 MGP_C3HHeJ_G0017001.1 mouse_genomes_project 10 56883072 56886642 + MGP_C3HHeJ_P0024987 Fabp7 protein_coding protein_coding MGP_C3HHeJ_T0024988.1 MGP_C3HHeJ_G0017001.1 mouse_genomes_project 10 56883114 56885004 + MGP_C3HHeJ_P0024988 Fabp7 protein_coding protein_coding MGP_C3HHeJ_T0000791.1 MGP_C3HHeJ_G0000733.1 mouse_genomes_project 10 78459455 78462208 - TEC TEC MGP_C3HHeJ_T0026313.1 MGP_C3HHeJ_G0017334.1 mouse_genomes_project 10 81856256 81857778 - MGP_C3HHeJ_P0026313 protein_coding protein_coding MGP_C3HHeJ_T0009556.1 MGP_C3HHeJ_G0007689.1 mouse_genomes_project 10 130702082 130702151 + Mir6915 miRNA miRNA MGP_C3HHeJ_T0098702.1 MGP_C3HHeJ_G0036896.1 mouse_genomes_project 10 38095662 38095778 + Gm22105 snRNA snRNA MGP_C3HHeJ_T0026849.1 MGP_C3HHeJ_G0017494.1 mouse_genomes_project 10 114496748 114500321 - MGP_C3HHeJ_P0026849 Atxn7l3b protein_coding protein_coding MGP_C3HHeJ_T0026850.1 MGP_C3HHeJ_G0017494.1 mouse_genomes_project 10 114499114 114500327 - Atxn7l3b protein_coding processed_transcript MGP_C3HHeJ_T0024672.1 MGP_C3HHeJ_G0016893.1 mouse_genomes_project 10 32188378 32263255 + MGP_C3HHeJ_P0024672 Trappc3l protein_coding protein_coding MGP_C3HHeJ_T0027056.1 MGP_C3HHeJ_G0017563.1 mouse_genomes_project 10 129218542 129230469 - MGP_C3HHeJ_P0027056 Mettl21b protein_coding protein_coding MGP_C3HHeJ_T0027234.1 MGP_C3HHeJ_G0017616.1 mouse_genomes_project 10 130547120 130548891 + MGP_C3HHeJ_P0027234 Apon protein_coding protein_coding MGP_C3HHeJ_T0025084.1 MGP_C3HHeJ_G0017030.1 mouse_genomes_project 10 59249828 59277114 + MGP_C3HHeJ_P0025084 Vsir protein_coding protein_coding MGP_C3HHeJ_T0025085.1 MGP_C3HHeJ_G0017030.1 mouse_genomes_project 10 59249882 59261246 + Vsir protein_coding processed_transcript MGP_C3HHeJ_T0025086.1 MGP_C3HHeJ_G0017030.1 mouse_genomes_project 10 59249884 59261028 + Vsir protein_coding processed_transcript MGP_C3HHeJ_T0025087.1 MGP_C3HHeJ_G0017030.1 mouse_genomes_project 10 59249961 59263469 + Vsir protein_coding retained_intron MGP_C3HHeJ_T0025088.1 MGP_C3HHeJ_G0017030.1 mouse_genomes_project 10 59249989 59272198 + MGP_C3HHeJ_P0025088 Vsir protein_coding protein_coding MGP_C3HHeJ_T0025089.1 MGP_C3HHeJ_G0017030.1 mouse_genomes_project 10 59249999 59277098 + MGP_C3HHeJ_P0025089 Vsir protein_coding protein_coding MGP_C3HHeJ_T0025533.1 MGP_C3HHeJ_G0017124.1 mouse_genomes_project 10 75354513 75364000 - MGP_C3HHeJ_P0025533 Gm20441 protein_coding protein_coding MGP_C3HHeJ_T0024303.1 MGP_C3HHeJ_G0016769.1 mouse_genomes_project 10 7650058 7804140 - MGP_C3HHeJ_P0024303 protein_coding protein_coding MGP_C3HHeJ_T0024304.1 MGP_C3HHeJ_G0016769.1 mouse_genomes_project 10 7650064 7732268 - MGP_C3HHeJ_P0024304 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024305.1 MGP_C3HHeJ_G0016769.1 mouse_genomes_project 10 7650064 7804152 - MGP_C3HHeJ_P0024305 protein_coding protein_coding MGP_C3HHeJ_T0024306.1 MGP_C3HHeJ_G0016769.1 mouse_genomes_project 10 7650293 7804140 - MGP_C3HHeJ_P0024306 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024307.1 MGP_C3HHeJ_G0016769.1 mouse_genomes_project 10 7719743 7750751 - MGP_C3HHeJ_P0024307 protein_coding protein_coding MGP_C3HHeJ_T0024308.1 MGP_C3HHeJ_G0016769.1 mouse_genomes_project 10 7720401 7804152 - MGP_C3HHeJ_P0024308 protein_coding protein_coding MGP_C3HHeJ_T0002964.1 MGP_C3HHeJ_G0002774.1 mouse_genomes_project 10 41709028 41710444 + Gm29245 antisense antisense MGP_C3HHeJ_T0027157.1 MGP_C3HHeJ_G0017592.1 mouse_genomes_project 10 129906604 129912408 - MGP_C3HHeJ_P0027157 Nab2 protein_coding protein_coding MGP_C3HHeJ_T0027158.1 MGP_C3HHeJ_G0017592.1 mouse_genomes_project 10 129906605 129912330 - MGP_C3HHeJ_P0027158 Nab2 protein_coding protein_coding MGP_C3HHeJ_T0027159.1 MGP_C3HHeJ_G0017592.1 mouse_genomes_project 10 129910622 129911179 - MGP_C3HHeJ_P0027159 Nab2 protein_coding protein_coding MGP_C3HHeJ_T0027160.1 MGP_C3HHeJ_G0017592.1 mouse_genomes_project 10 129910681 129915201 - MGP_C3HHeJ_P0027160 Nab2 protein_coding protein_coding MGP_C3HHeJ_T0026515.1 MGP_C3HHeJ_G0017395.1 mouse_genomes_project 10 89199050 89208589 - MGP_C3HHeJ_P0026515 Spic protein_coding protein_coding MGP_C3HHeJ_T0026516.1 MGP_C3HHeJ_G0017395.1 mouse_genomes_project 10 89200832 89208589 - MGP_C3HHeJ_P0026516 Spic protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026517.1 MGP_C3HHeJ_G0017395.1 mouse_genomes_project 10 89201455 89211875 - MGP_C3HHeJ_P0026517 Spic protein_coding protein_coding MGP_C3HHeJ_T0026518.1 MGP_C3HHeJ_G0017395.1 mouse_genomes_project 10 89203357 89208589 - Spic protein_coding retained_intron MGP_C3HHeJ_T0024995.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57054892 57070575 + MGP_C3HHeJ_P0024995 Gcc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024996.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57054914 57106308 + MGP_C3HHeJ_P0024996 Gcc2 protein_coding protein_coding MGP_C3HHeJ_T0024997.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57054950 57106666 + MGP_C3HHeJ_P0024997 Gcc2 protein_coding protein_coding MGP_C3HHeJ_T0024998.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57055097 57070447 + MGP_C3HHeJ_P0024998 Gcc2 protein_coding protein_coding MGP_C3HHeJ_T0024999.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57055275 57069158 + Gcc2 protein_coding processed_transcript MGP_C3HHeJ_T0025000.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57074557 57077406 + Gcc2 protein_coding retained_intron MGP_C3HHeJ_T0025001.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57076068 57082606 + MGP_C3HHeJ_P0025001 Gcc2 protein_coding protein_coding MGP_C3HHeJ_T0025002.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57087040 57093872 + Gcc2 protein_coding retained_intron MGP_C3HHeJ_T0025003.1 MGP_C3HHeJ_G0017006.1 mouse_genomes_project 10 57099513 57106655 + Gcc2 protein_coding retained_intron MGP_C3HHeJ_T0025026.1 MGP_C3HHeJ_G0017018.1 mouse_genomes_project 10 58267623 58289282 - MGP_C3HHeJ_P0025026 Oit3 protein_coding protein_coding MGP_C3HHeJ_T0025027.1 MGP_C3HHeJ_G0017018.1 mouse_genomes_project 10 58274278 58278482 - Oit3 protein_coding retained_intron MGP_C3HHeJ_T0000787.1 MGP_C3HHeJ_G0000729.1 mouse_genomes_project 10 38587629 38590854 - TEC TEC MGP_C3HHeJ_T0016872.1 MGP_C3HHeJ_G0014890.1 mouse_genomes_project 10 4948518 4965186 - Gm20470 processed_transcript processed_transcript MGP_C3HHeJ_T0002954.1 MGP_C3HHeJ_G0002768.1 mouse_genomes_project 10 37892160 37895385 - Gm16364 antisense antisense MGP_C3HHeJ_T0024546.1 MGP_C3HHeJ_G0016844.1 mouse_genomes_project 10 21848434 21850746 + MGP_C3HHeJ_P0024546 protein_coding protein_coding MGP_C3HHeJ_T0025908.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80029787 80039887 + Gpx4 protein_coding processed_transcript MGP_C3HHeJ_T0025909.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80036105 80039887 + MGP_C3HHeJ_P0025909 Gpx4 protein_coding protein_coding MGP_C3HHeJ_T0025910.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80036652 80037725 + Gpx4 protein_coding processed_transcript MGP_C3HHeJ_T0025911.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80036654 80039887 + MGP_C3HHeJ_P0025911 Gpx4 protein_coding protein_coding MGP_C3HHeJ_T0025912.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80037082 80039842 + MGP_C3HHeJ_P0025912 Gpx4 protein_coding protein_coding MGP_C3HHeJ_T0025913.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80039341 80039813 + Gpx4 protein_coding retained_intron MGP_C3HHeJ_T0025914.1 MGP_C3HHeJ_G0017243.1 mouse_genomes_project 10 80039445 80039811 + Gpx4 protein_coding retained_intron MGP_C3HHeJ_T0024845.1 MGP_C3HHeJ_G0016947.1 mouse_genomes_project 10 41096781 41097691 + Ostm1 protein_coding processed_transcript MGP_C3HHeJ_T0024846.1 MGP_C3HHeJ_G0016947.1 mouse_genomes_project 10 41096794 41223189 + MGP_C3HHeJ_P0024846 Ostm1 protein_coding protein_coding MGP_C3HHeJ_T0024847.1 MGP_C3HHeJ_G0016947.1 mouse_genomes_project 10 41096797 41225358 + MGP_C3HHeJ_P0024847 Ostm1 protein_coding protein_coding MGP_C3HHeJ_T0024848.1 MGP_C3HHeJ_G0016947.1 mouse_genomes_project 10 41203200 41227325 + MGP_C3HHeJ_P0024848 Ostm1 protein_coding protein_coding MGP_C3HHeJ_T0024849.1 MGP_C3HHeJ_G0016947.1 mouse_genomes_project 10 41203250 41224857 + Ostm1 protein_coding retained_intron MGP_C3HHeJ_T0009546.1 MGP_C3HHeJ_G0007679.1 mouse_genomes_project 10 124776907 124777008 + Mir8104 miRNA miRNA MGP_C3HHeJ_T0026477.1 MGP_C3HHeJ_G0017388.1 mouse_genomes_project 10 88637110 88668277 + MGP_C3HHeJ_P0026477 Nup37 protein_coding protein_coding MGP_C3HHeJ_T0026478.1 MGP_C3HHeJ_G0017388.1 mouse_genomes_project 10 88637189 88668277 + MGP_C3HHeJ_P0026478 Nup37 protein_coding protein_coding MGP_C3HHeJ_T0025256.1 MGP_C3HHeJ_G0017073.1 mouse_genomes_project 10 62167402 62167852 + MGP_C3HHeJ_P0025256 Atoh7 protein_coding protein_coding MGP_C3HHeJ_T0099945.1 MGP_C3HHeJ_G0038139.1 mouse_genomes_project 10 47156014 47156143 + Gm23584 snoRNA snoRNA MGP_C3HHeJ_T0000807.1 MGP_C3HHeJ_G0000748.1 mouse_genomes_project 10 122764124 122766059 + TEC TEC MGP_C3HHeJ_T0025668.1 MGP_C3HHeJ_G0017162.1 mouse_genomes_project 10 77336366 77358990 + MGP_C3HHeJ_P0025668 Ube2g2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025669.1 MGP_C3HHeJ_G0017162.1 mouse_genomes_project 10 77336417 77360429 + MGP_C3HHeJ_P0025669 Ube2g2 protein_coding protein_coding MGP_C3HHeJ_T0025670.1 MGP_C3HHeJ_G0017162.1 mouse_genomes_project 10 77336421 77355931 + MGP_C3HHeJ_P0025670 Ube2g2 protein_coding protein_coding MGP_C3HHeJ_T0025671.1 MGP_C3HHeJ_G0017162.1 mouse_genomes_project 10 77355616 77358939 + Ube2g2 protein_coding retained_intron MGP_C3HHeJ_T0027306.1 MGP_C3HHeJ_G0017648.1 mouse_genomes_project 10 131164819 131219220 + MGP_C3HHeJ_P0027306 Sarnp protein_coding protein_coding MGP_C3HHeJ_T0012298.1 MGP_C3HHeJ_G0010402.1 mouse_genomes_project 10 29743494 29744797 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006034.1 MGP_C3HHeJ_G0005041.1 mouse_genomes_project 10 66164568 66167266 + Gm26576 lincRNA lincRNA MGP_C3HHeJ_T0027349.1 MGP_C3HHeJ_G0017672.1 mouse_genomes_project 10 131866334 131867273 + MGP_C3HHeJ_P0027349 Olfr789 protein_coding protein_coding MGP_C3HHeJ_T0027332.1 MGP_C3HHeJ_G0017660.1 mouse_genomes_project 10 131639305 131640245 + MGP_C3HHeJ_P0027332 Olfr775 protein_coding protein_coding MGP_C3HHeJ_T0101111.1 MGP_C3HHeJ_G0039289.1 mouse_genomes_project 10 87374559 87377797 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0027178.1 MGP_C3HHeJ_G0017603.1 mouse_genomes_project 10 130116913 130126980 + MGP_C3HHeJ_P0027178 BC089597 protein_coding protein_coding MGP_C3HHeJ_T0024151.1 MGP_C3HHeJ_G0016736.1 mouse_genomes_project 10 938406 1142067 + MGP_C3HHeJ_P0024151 Mthfd1l protein_coding protein_coding MGP_C3HHeJ_T0024152.1 MGP_C3HHeJ_G0016736.1 mouse_genomes_project 10 938419 1152672 + MGP_C3HHeJ_P0024152 Mthfd1l protein_coding protein_coding MGP_C3HHeJ_T0024153.1 MGP_C3HHeJ_G0016736.1 mouse_genomes_project 10 938432 1142067 + MGP_C3HHeJ_P0024153 Mthfd1l protein_coding protein_coding MGP_C3HHeJ_T0024154.1 MGP_C3HHeJ_G0016736.1 mouse_genomes_project 10 999593 1022909 + Mthfd1l protein_coding processed_transcript MGP_C3HHeJ_T0012337.1 MGP_C3HHeJ_G0010441.1 mouse_genomes_project 10 122973782 122974569 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006076.1 MGP_C3HHeJ_G0005066.1 mouse_genomes_project 10 112946250 112947338 - Gm28592 lincRNA lincRNA MGP_C3HHeJ_T0027007.1 MGP_C3HHeJ_G0017548.1 mouse_genomes_project 10 123731973 123771818 + MGP_C3HHeJ_P0027007 D930020B18Rik protein_coding protein_coding MGP_C3HHeJ_T0027008.1 MGP_C3HHeJ_G0017548.1 mouse_genomes_project 10 123732086 123787253 + MGP_C3HHeJ_P0027008 D930020B18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027009.1 MGP_C3HHeJ_G0017548.1 mouse_genomes_project 10 123732179 123786982 + MGP_C3HHeJ_P0027009 D930020B18Rik protein_coding protein_coding MGP_C3HHeJ_T0027010.1 MGP_C3HHeJ_G0017548.1 mouse_genomes_project 10 123732257 123786982 + MGP_C3HHeJ_P0027010 D930020B18Rik protein_coding protein_coding MGP_C3HHeJ_T0024260.1 MGP_C3HHeJ_G0016757.1 mouse_genomes_project 10 4856277 4878400 + MGP_C3HHeJ_P0024260 Nup43 protein_coding protein_coding MGP_C3HHeJ_T0024261.1 MGP_C3HHeJ_G0016757.1 mouse_genomes_project 10 4856288 4857068 + Nup43 protein_coding retained_intron MGP_C3HHeJ_T0024262.1 MGP_C3HHeJ_G0016757.1 mouse_genomes_project 10 4856314 4875596 + Nup43 protein_coding retained_intron MGP_C3HHeJ_T0024263.1 MGP_C3HHeJ_G0016757.1 mouse_genomes_project 10 4864981 4874770 + Nup43 protein_coding retained_intron MGP_C3HHeJ_T0025848.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79832503 79847538 - MGP_C3HHeJ_P0025848 Plppr3 protein_coding protein_coding MGP_C3HHeJ_T0025851.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79837813 79847334 - Plppr3 protein_coding retained_intron MGP_C3HHeJ_T0025852.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79837813 79847538 - Plppr3 protein_coding retained_intron MGP_C3HHeJ_T0025853.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79837813 79847602 - MGP_C3HHeJ_P0025853 Plppr3 protein_coding protein_coding MGP_C3HHeJ_T0025854.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79839444 79840314 - Plppr3 protein_coding retained_intron MGP_C3HHeJ_T0025855.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79839464 79847192 - MGP_C3HHeJ_P0025855 Plppr3 protein_coding protein_coding MGP_C3HHeJ_T0025856.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79839470 79847376 - MGP_C3HHeJ_P0025856 Plppr3 protein_coding protein_coding MGP_C3HHeJ_T0025857.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79839886 79847357 - Plppr3 protein_coding processed_transcript MGP_C3HHeJ_T0025858.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79839940 79847367 - MGP_C3HHeJ_P0025858 Plppr3 protein_coding protein_coding MGP_C3HHeJ_T0025859.1 MGP_C3HHeJ_G0017227.1 mouse_genomes_project 10 79840491 79847338 - MGP_C3HHeJ_P0025859 Plppr3 protein_coding protein_coding MGP_C3HHeJ_T0006081.1 MGP_C3HHeJ_G0005070.1 mouse_genomes_project 10 118478280 118484398 - 1700030O20Rik lincRNA lincRNA MGP_C3HHeJ_T0006037.1 MGP_C3HHeJ_G0005044.1 mouse_genomes_project 10 77194416 77226703 + 2810425M01Rik lincRNA lincRNA MGP_C3HHeJ_T0027308.1 MGP_C3HHeJ_G0017650.1 mouse_genomes_project 10 131258037 131261933 + MGP_C3HHeJ_P0027308 Cd63 protein_coding protein_coding MGP_C3HHeJ_T0027309.1 MGP_C3HHeJ_G0017650.1 mouse_genomes_project 10 131258984 131261933 + MGP_C3HHeJ_P0027309 Cd63 protein_coding protein_coding MGP_C3HHeJ_T0026840.1 MGP_C3HHeJ_G0017490.1 mouse_genomes_project 10 113449227 113461858 - MGP_C3HHeJ_P0026840 Glipr1 protein_coding protein_coding MGP_C3HHeJ_T0026841.1 MGP_C3HHeJ_G0017490.1 mouse_genomes_project 10 113449234 113467881 - MGP_C3HHeJ_P0026841 Glipr1 protein_coding protein_coding MGP_C3HHeJ_T0026842.1 MGP_C3HHeJ_G0017490.1 mouse_genomes_project 10 113449239 113458087 - MGP_C3HHeJ_P0026842 Glipr1 protein_coding protein_coding MGP_C3HHeJ_T0026843.1 MGP_C3HHeJ_G0017490.1 mouse_genomes_project 10 113458059 113467891 - Glipr1 protein_coding processed_transcript MGP_C3HHeJ_T0026844.1 MGP_C3HHeJ_G0017490.1 mouse_genomes_project 10 113458159 113460414 - Glipr1 protein_coding processed_transcript MGP_C3HHeJ_T0024272.1 MGP_C3HHeJ_G0016760.1 mouse_genomes_project 10 4972134 4985200 - MGP_C3HHeJ_P0024272 Ginm1 protein_coding protein_coding MGP_C3HHeJ_T0024273.1 MGP_C3HHeJ_G0016760.1 mouse_genomes_project 10 4972137 4974724 - Ginm1 protein_coding retained_intron MGP_C3HHeJ_T0024274.1 MGP_C3HHeJ_G0016760.1 mouse_genomes_project 10 4972143 4985174 - MGP_C3HHeJ_P0024274 Ginm1 protein_coding protein_coding MGP_C3HHeJ_T0024275.1 MGP_C3HHeJ_G0016760.1 mouse_genomes_project 10 4983603 4997221 - Ginm1 protein_coding processed_transcript MGP_C3HHeJ_T0024276.1 MGP_C3HHeJ_G0016760.1 mouse_genomes_project 10 4995842 4997245 - Ginm1 protein_coding processed_transcript MGP_C3HHeJ_T0024277.1 MGP_C3HHeJ_G0016760.1 mouse_genomes_project 10 4996943 4997243 - MGP_C3HHeJ_P0024277 Ginm1 protein_coding protein_coding MGP_C3HHeJ_T0027394.1 MGP_C3HHeJ_G0017704.1 mouse_genomes_project 10 132806573 132851058 + MGP_C3HHeJ_P0027394 Tespa1 protein_coding protein_coding MGP_C3HHeJ_T0026278.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682744 81689428 - Tle6 protein_coding processed_transcript MGP_C3HHeJ_T0026279.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682744 81692676 - MGP_C3HHeJ_P0026279 Tle6 protein_coding protein_coding MGP_C3HHeJ_T0026280.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682745 81687256 - Tle6 protein_coding retained_intron MGP_C3HHeJ_T0026281.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682745 81684556 - Tle6 protein_coding processed_transcript MGP_C3HHeJ_T0026282.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682745 81692701 - MGP_C3HHeJ_P0026282 Tle6 protein_coding protein_coding MGP_C3HHeJ_T0026283.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682747 81689183 - Tle6 protein_coding processed_transcript MGP_C3HHeJ_T0026284.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81682973 81684659 - Tle6 protein_coding retained_intron MGP_C3HHeJ_T0026285.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81685759 81687085 - Tle6 protein_coding retained_intron MGP_C3HHeJ_T0026286.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81686079 81687649 - Tle6 protein_coding retained_intron MGP_C3HHeJ_T0026287.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81687049 81689176 - Tle6 protein_coding processed_transcript MGP_C3HHeJ_T0026288.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81687069 81689169 - Tle6 protein_coding processed_transcript MGP_C3HHeJ_T0026289.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81687793 81689205 - Tle6 protein_coding processed_transcript MGP_C3HHeJ_T0026290.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81687833 81692658 - MGP_C3HHeJ_P0026290 Tle6 protein_coding protein_coding MGP_C3HHeJ_T0026291.1 MGP_C3HHeJ_G0017330.1 mouse_genomes_project 10 81687836 81692874 - MGP_C3HHeJ_P0026291 Tle6 protein_coding protein_coding MGP_C3HHeJ_T0024155.1 MGP_C3HHeJ_G0016737.1 mouse_genomes_project 10 1260006 1363066 + MGP_C3HHeJ_P0024155 Akap12 protein_coding protein_coding MGP_C3HHeJ_T0027026.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124776354 124990728 + Ppm1h protein_coding retained_intron MGP_C3HHeJ_T0027027.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124776370 125039239 + MGP_C3HHeJ_P0027027 Ppm1h protein_coding protein_coding MGP_C3HHeJ_T0027028.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124776374 125060435 + MGP_C3HHeJ_P0027028 Ppm1h protein_coding protein_coding MGP_C3HHeJ_T0027029.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124857002 124924481 + Ppm1h protein_coding processed_transcript MGP_C3HHeJ_T0027030.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124924253 124929689 + Ppm1h protein_coding retained_intron MGP_C3HHeJ_T0027031.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124924411 125056488 + Ppm1h protein_coding retained_intron MGP_C3HHeJ_T0027032.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 124924456 124998994 + Ppm1h protein_coding processed_transcript MGP_C3HHeJ_T0027033.1 MGP_C3HHeJ_G0017553.1 mouse_genomes_project 10 125008054 125056649 + MGP_C3HHeJ_P0027033 Ppm1h protein_coding protein_coding MGP_C3HHeJ_T0024549.1 MGP_C3HHeJ_G0016847.1 mouse_genomes_project 10 21971107 21973825 - MGP_C3HHeJ_P0024549 Taar8c protein_coding protein_coding MGP_C3HHeJ_T0099940.1 MGP_C3HHeJ_G0038134.1 mouse_genomes_project 10 38627103 38627317 + Rnu3a snoRNA snoRNA MGP_C3HHeJ_T0025673.1 MGP_C3HHeJ_G0017164.1 mouse_genomes_project 10 77424859 77425192 + MGP_C3HHeJ_P0025673 Gm10272 protein_coding protein_coding MGP_C3HHeJ_T0027310.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131262705 131268360 - MGP_C3HHeJ_P0027310 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027311.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131262933 131267146 - MGP_C3HHeJ_P0027311 protein_coding protein_coding MGP_C3HHeJ_T0027312.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131262962 131263740 - protein_coding retained_intron MGP_C3HHeJ_T0027313.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131263341 131268366 - MGP_C3HHeJ_P0027313 protein_coding protein_coding MGP_C3HHeJ_T0027314.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131266394 131268391 - protein_coding retained_intron MGP_C3HHeJ_T0027316.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131267017 131267799 - MGP_C3HHeJ_P0027316 protein_coding protein_coding MGP_C3HHeJ_T0027317.1 MGP_C3HHeJ_G0017651.1 mouse_genomes_project 10 131267513 131272052 - MGP_C3HHeJ_P0027317 protein_coding protein_coding MGP_C3HHeJ_T0027140.1 MGP_C3HHeJ_G0017588.1 mouse_genomes_project 10 129751108 129757431 - MGP_C3HHeJ_P0027140 Shmt2 protein_coding protein_coding MGP_C3HHeJ_T0026709.1 MGP_C3HHeJ_G0017439.1 mouse_genomes_project 10 96995777 96996089 + MGP_C3HHeJ_P0026709 Gm5426 protein_coding protein_coding MGP_C3HHeJ_T0024242.1 MGP_C3HHeJ_G0016753.1 mouse_genomes_project 10 4285377 4301747 - MGP_C3HHeJ_P0024242 Cnksr3 protein_coding protein_coding MGP_C3HHeJ_T0024243.1 MGP_C3HHeJ_G0016753.1 mouse_genomes_project 10 4285377 4381009 - MGP_C3HHeJ_P0024243 Cnksr3 protein_coding protein_coding MGP_C3HHeJ_T0098746.1 MGP_C3HHeJ_G0036940.1 mouse_genomes_project 10 116647436 116647543 + Gm22070 snRNA snRNA MGP_C3HHeJ_T0027173.1 MGP_C3HHeJ_G0017599.1 mouse_genomes_project 10 130025682 130027659 + MGP_C3HHeJ_P0027173 protein_coding protein_coding MGP_C3HHeJ_T0006016.1 MGP_C3HHeJ_G0005027.1 mouse_genomes_project 10 38247435 38257406 + 4930547M16Rik lincRNA lincRNA MGP_C3HHeJ_T0025033.1 MGP_C3HHeJ_G0017020.1 mouse_genomes_project 10 58472644 58472980 + MGP_C3HHeJ_P0025033 Gm10322 protein_coding protein_coding MGP_C3HHeJ_T0025584.1 MGP_C3HHeJ_G0017143.1 mouse_genomes_project 10 76114505 76124856 + MGP_C3HHeJ_P0025584 2610028H24Rik protein_coding protein_coding MGP_C3HHeJ_T0025672.1 MGP_C3HHeJ_G0017163.1 mouse_genomes_project 10 77406873 77407973 - MGP_C3HHeJ_P0025672 Gm19402 protein_coding protein_coding MGP_C3HHeJ_T0101112.1 MGP_C3HHeJ_G0039290.1 mouse_genomes_project 10 89264185 89266734 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101113.1 MGP_C3HHeJ_G0039290.1 mouse_genomes_project 10 89265952 89266349 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0025154.1 MGP_C3HHeJ_G0017051.1 mouse_genomes_project 10 61070421 61072385 + MGP_C3HHeJ_P0025154 Gm5424 protein_coding protein_coding MGP_C3HHeJ_T0026549.1 MGP_C3HHeJ_G0017404.1 mouse_genomes_project 10 90301975 90325231 - MGP_C3HHeJ_P0026549 Actr6 protein_coding protein_coding MGP_C3HHeJ_T0026323.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82872989 82884460 + protein_coding processed_transcript MGP_C3HHeJ_T0026324.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82873777 82887350 + MGP_C3HHeJ_P0026324 protein_coding protein_coding MGP_C3HHeJ_T0026325.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82884290 82887366 + protein_coding retained_intron MGP_C3HHeJ_T0026326.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82884578 82892470 + MGP_C3HHeJ_P0026326 protein_coding protein_coding MGP_C3HHeJ_T0026327.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82887073 82887839 + protein_coding retained_intron MGP_C3HHeJ_T0026328.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82887343 82893398 + MGP_C3HHeJ_P0026328 protein_coding protein_coding MGP_C3HHeJ_T0026329.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82887498 82890820 + protein_coding retained_intron MGP_C3HHeJ_T0026330.1 MGP_C3HHeJ_G0017342.1 mouse_genomes_project 10 82890122 82891471 + protein_coding retained_intron MGP_C3HHeJ_T0098741.1 MGP_C3HHeJ_G0036935.1 mouse_genomes_project 10 107354757 107354874 - Gm23793 snRNA snRNA MGP_C3HHeJ_T0026261.1 MGP_C3HHeJ_G0017328.1 mouse_genomes_project 10 81649921 81658234 + MGP_C3HHeJ_P0026261 Aes protein_coding protein_coding MGP_C3HHeJ_T0099920.1 MGP_C3HHeJ_G0038114.1 mouse_genomes_project 10 7162645 7162776 - Gm25635 snoRNA snoRNA MGP_C3HHeJ_T0025797.1 MGP_C3HHeJ_G0017213.1 mouse_genomes_project 10 79626251 79630214 + MGP_C3HHeJ_P0025797 Madcam1 protein_coding protein_coding MGP_C3HHeJ_T0098705.1 MGP_C3HHeJ_G0036899.1 mouse_genomes_project 10 43355602 43355717 + Gm22503 snRNA snRNA MGP_C3HHeJ_T0011173.1 MGP_C3HHeJ_G0009306.1 mouse_genomes_project 10 23198613 23198866 - Gm26167 misc_RNA misc_RNA MGP_C3HHeJ_T0025888.1 MGP_C3HHeJ_G0017238.1 mouse_genomes_project 10 79954721 79958547 - Tmem259 protein_coding retained_intron MGP_C3HHeJ_T0025889.1 MGP_C3HHeJ_G0017238.1 mouse_genomes_project 10 79955663 79958714 - Tmem259 protein_coding retained_intron MGP_C3HHeJ_T0025890.1 MGP_C3HHeJ_G0017238.1 mouse_genomes_project 10 79956891 79964091 - MGP_C3HHeJ_P0025890 Tmem259 protein_coding protein_coding MGP_C3HHeJ_T0025891.1 MGP_C3HHeJ_G0017238.1 mouse_genomes_project 10 79957131 79963801 - MGP_C3HHeJ_P0025891 Tmem259 protein_coding protein_coding MGP_C3HHeJ_T0025892.1 MGP_C3HHeJ_G0017238.1 mouse_genomes_project 10 79957736 79958550 - Tmem259 protein_coding retained_intron MGP_C3HHeJ_T0024992.1 MGP_C3HHeJ_G0017003.1 mouse_genomes_project 10 57021586 57033785 - MGP_C3HHeJ_P0024992 protein_coding protein_coding MGP_C3HHeJ_T0098338.1 MGP_C3HHeJ_G0036549.1 mouse_genomes_project 10 72998237 73028414 + Gm15397 sense_intronic sense_intronic MGP_C3HHeJ_T0098710.1 MGP_C3HHeJ_G0036904.1 mouse_genomes_project 10 49990424 49990531 + Gm26257 snRNA snRNA MGP_C3HHeJ_T0027333.1 MGP_C3HHeJ_G0017661.1 mouse_genomes_project 10 131651370 131652310 + MGP_C3HHeJ_P0027333 Olfr774 protein_coding protein_coding MGP_C3HHeJ_T0027334.1 MGP_C3HHeJ_G0017661.1 mouse_genomes_project 10 131651370 131652308 + MGP_C3HHeJ_P0027334 Olfr774 protein_coding protein_coding MGP_C3HHeJ_T0025307.1 MGP_C3HHeJ_G0017089.1 mouse_genomes_project 10 67281928 67350702 + MGP_C3HHeJ_P0025307 Rtkn2 protein_coding protein_coding MGP_C3HHeJ_T0025308.1 MGP_C3HHeJ_G0017089.1 mouse_genomes_project 10 67281956 67350698 + MGP_C3HHeJ_P0025308 Rtkn2 protein_coding protein_coding MGP_C3HHeJ_T0025309.1 MGP_C3HHeJ_G0017089.1 mouse_genomes_project 10 67281963 67367106 + MGP_C3HHeJ_P0025309 Rtkn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025310.1 MGP_C3HHeJ_G0017089.1 mouse_genomes_project 10 67282056 67367109 + MGP_C3HHeJ_P0025310 Rtkn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025311.1 MGP_C3HHeJ_G0017089.1 mouse_genomes_project 10 67282073 67349133 + MGP_C3HHeJ_P0025311 Rtkn2 protein_coding protein_coding MGP_C3HHeJ_T0025312.1 MGP_C3HHeJ_G0017089.1 mouse_genomes_project 10 67350801 67358471 + Rtkn2 protein_coding processed_transcript MGP_C3HHeJ_T0006017.1 MGP_C3HHeJ_G0005028.1 mouse_genomes_project 10 40049876 40052707 - Gm29095 lincRNA lincRNA MGP_C3HHeJ_T0006021.1 MGP_C3HHeJ_G0005032.1 mouse_genomes_project 10 59850376 59860919 - Pldi lincRNA lincRNA MGP_C3HHeJ_T0097837.1 MGP_C3HHeJ_G0036049.1 mouse_genomes_project 10 63137769 63138134 + pseudogene pseudogene MGP_C3HHeJ_T0101621.1 MGP_C3HHeJ_G0039587.1 mouse_genomes_project 10 131938390 131939277 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024926.1 MGP_C3HHeJ_G0016978.1 mouse_genomes_project 10 50586775 50587797 - MGP_C3HHeJ_P0024926 4933411G06Rik protein_coding protein_coding MGP_C3HHeJ_T0003031.1 MGP_C3HHeJ_G0002824.1 mouse_genomes_project 10 121727936 121744894 - Grip1os2 antisense antisense MGP_C3HHeJ_T0011184.1 MGP_C3HHeJ_G0009317.1 mouse_genomes_project 10 92760884 92761046 - Gm27608 misc_RNA misc_RNA MGP_C3HHeJ_T0097834.1 MGP_C3HHeJ_G0036046.1 mouse_genomes_project 10 42588946 42589494 + pseudogene pseudogene MGP_C3HHeJ_T0012321.1 MGP_C3HHeJ_G0010425.1 mouse_genomes_project 10 75581733 75582007 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097976.1 MGP_C3HHeJ_G0036188.1 mouse_genomes_project 10 24271760 24271860 + Gm23757 rRNA rRNA MGP_C3HHeJ_T0026800.1 MGP_C3HHeJ_G0017475.1 mouse_genomes_project 10 108747702 108749532 - MGP_C3HHeJ_P0026800 Myf6 protein_coding protein_coding MGP_C3HHeJ_T0099931.1 MGP_C3HHeJ_G0038125.1 mouse_genomes_project 10 21633411 21633485 - Gm23130 snoRNA snoRNA MGP_C3HHeJ_T0016874.1 MGP_C3HHeJ_G0014892.1 mouse_genomes_project 10 22435027 22435924 - Gm15270 processed_transcript processed_transcript MGP_C3HHeJ_T0016875.1 MGP_C3HHeJ_G0014892.1 mouse_genomes_project 10 22435033 22483893 - Gm15270 processed_transcript processed_transcript MGP_C3HHeJ_T0016876.1 MGP_C3HHeJ_G0014892.1 mouse_genomes_project 10 22467522 22481809 - Gm15270 processed_transcript processed_transcript MGP_C3HHeJ_T0016877.1 MGP_C3HHeJ_G0014892.1 mouse_genomes_project 10 22483322 22485186 - Gm15270 processed_transcript processed_transcript MGP_C3HHeJ_T0024544.1 MGP_C3HHeJ_G0016842.1 mouse_genomes_project 10 21840225 21841976 - MGP_C3HHeJ_P0024544 Taar7a protein_coding protein_coding MGP_C3HHeJ_T0024563.1 MGP_C3HHeJ_G0016854.1 mouse_genomes_project 10 22674695 22740343 - MGP_C3HHeJ_P0024563 Enpp3 protein_coding protein_coding MGP_C3HHeJ_T0009541.1 MGP_C3HHeJ_G0007674.1 mouse_genomes_project 10 110660358 110660441 - Gm44495 miRNA miRNA MGP_C3HHeJ_T0024692.1 MGP_C3HHeJ_G0016904.1 mouse_genomes_project 10 35232682 35268481 + MGP_C3HHeJ_P0024692 Hdac2 protein_coding protein_coding MGP_C3HHeJ_T0024693.1 MGP_C3HHeJ_G0016904.1 mouse_genomes_project 10 35232708 35254250 + MGP_C3HHeJ_P0024693 Hdac2 protein_coding protein_coding MGP_C3HHeJ_T0024694.1 MGP_C3HHeJ_G0016904.1 mouse_genomes_project 10 35249904 35268480 + Hdac2 protein_coding processed_transcript MGP_C3HHeJ_T0024695.1 MGP_C3HHeJ_G0016904.1 mouse_genomes_project 10 35264763 35268203 + Hdac2 protein_coding retained_intron MGP_C3HHeJ_T0026737.1 MGP_C3HHeJ_G0017457.1 mouse_genomes_project 10 101291407 101297686 - MGP_C3HHeJ_P0026737 protein_coding protein_coding MGP_C3HHeJ_T0012279.1 MGP_C3HHeJ_G0010383.1 mouse_genomes_project 10 957660 958104 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024796.1 MGP_C3HHeJ_G0016936.1 mouse_genomes_project 10 39956164 39968550 + MGP_C3HHeJ_P0024796 Cd164 protein_coding protein_coding MGP_C3HHeJ_T0024797.1 MGP_C3HHeJ_G0016936.1 mouse_genomes_project 10 39956251 39962017 + Cd164 protein_coding retained_intron MGP_C3HHeJ_T0024798.1 MGP_C3HHeJ_G0016936.1 mouse_genomes_project 10 39956642 39966548 + MGP_C3HHeJ_P0024798 Cd164 protein_coding protein_coding MGP_C3HHeJ_T0024799.1 MGP_C3HHeJ_G0016936.1 mouse_genomes_project 10 39956794 39963621 + Cd164 protein_coding processed_transcript MGP_C3HHeJ_T0009561.1 MGP_C3HHeJ_G0007694.1 mouse_genomes_project 10 130904444 130904505 - Mir6917 miRNA miRNA MGP_C3HHeJ_T0097978.1 MGP_C3HHeJ_G0036190.1 mouse_genomes_project 10 29414831 29414944 - n-R5s76 rRNA rRNA MGP_C3HHeJ_T0026421.1 MGP_C3HHeJ_G0017372.1 mouse_genomes_project 10 86388639 86441175 - MGP_C3HHeJ_P0026421 Bpifc protein_coding protein_coding MGP_C3HHeJ_T0026422.1 MGP_C3HHeJ_G0017372.1 mouse_genomes_project 10 86425141 86441136 - MGP_C3HHeJ_P0026422 Bpifc protein_coding protein_coding MGP_C3HHeJ_T0009495.1 MGP_C3HHeJ_G0007628.1 mouse_genomes_project 10 50860676 50860813 + Gm24084 miRNA miRNA MGP_C3HHeJ_T0026717.1 MGP_C3HHeJ_G0017445.1 mouse_genomes_project 10 98606861 98607176 - MGP_C3HHeJ_P0026717 Gm10754 protein_coding protein_coding MGP_C3HHeJ_T0099919.1 MGP_C3HHeJ_G0038113.1 mouse_genomes_project 10 6074367 6074504 - Gm25410 snoRNA snoRNA MGP_C3HHeJ_T0012311.1 MGP_C3HHeJ_G0010415.1 mouse_genomes_project 10 56880492 56880940 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026770.1 MGP_C3HHeJ_G0017464.1 mouse_genomes_project 10 103641825 103679500 + MGP_C3HHeJ_P0026770 Rassf9 protein_coding protein_coding MGP_C3HHeJ_T0024496.1 MGP_C3HHeJ_G0016820.1 mouse_genomes_project 10 19012530 19028374 + MGP_C3HHeJ_P0024496 Hbs1l protein_coding protein_coding MGP_C3HHeJ_T0024498.1 MGP_C3HHeJ_G0016820.1 mouse_genomes_project 10 19012685 19089292 + MGP_C3HHeJ_P0024498 Hbs1l protein_coding protein_coding MGP_C3HHeJ_T0099954.1 MGP_C3HHeJ_G0038148.1 mouse_genomes_project 10 71331509 71331640 + Gm22937 snoRNA snoRNA MGP_C3HHeJ_T0026718.1 MGP_C3HHeJ_G0017446.1 mouse_genomes_project 10 98619832 98621700 + MGP_C3HHeJ_P0026718 Ccer1 protein_coding protein_coding MGP_C3HHeJ_T0026161.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81302241 81322204 + MGP_C3HHeJ_P0026161 Zfr2 protein_coding protein_coding MGP_C3HHeJ_T0026162.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81302241 81306640 + MGP_C3HHeJ_P0026162 Zfr2 protein_coding protein_coding MGP_C3HHeJ_T0026163.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81302262 81306664 + Zfr2 protein_coding processed_transcript MGP_C3HHeJ_T0026164.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81302262 81312503 + Zfr2 protein_coding retained_intron MGP_C3HHeJ_T0026165.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81302273 81322202 + Zfr2 protein_coding retained_intron MGP_C3HHeJ_T0026166.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81318496 81321793 + MGP_C3HHeJ_P0026166 Zfr2 protein_coding protein_coding MGP_C3HHeJ_T0026167.1 MGP_C3HHeJ_G0017307.1 mouse_genomes_project 10 81319131 81320627 + Zfr2 protein_coding retained_intron MGP_C3HHeJ_T0009502.1 MGP_C3HHeJ_G0007635.1 mouse_genomes_project 10 60754484 60754569 + Mir5108 miRNA miRNA MGP_C3HHeJ_T0024968.1 MGP_C3HHeJ_G0016996.1 mouse_genomes_project 10 55409600 55423709 + MGP_C3HHeJ_P0024968 Gja1 protein_coding protein_coding MGP_C3HHeJ_T0027094.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129494509 129496222 - MGP_C3HHeJ_P0027094 Mbd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027095.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129494509 129501453 - MGP_C3HHeJ_P0027095 Mbd6 protein_coding protein_coding MGP_C3HHeJ_T0027096.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129494509 129498454 - MGP_C3HHeJ_P0027096 Mbd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027097.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129494509 129501578 - MGP_C3HHeJ_P0027097 Mbd6 protein_coding protein_coding MGP_C3HHeJ_T0027098.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129495229 129496912 - MGP_C3HHeJ_P0027098 Mbd6 protein_coding protein_coding MGP_C3HHeJ_T0027099.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129496079 129496925 - MGP_C3HHeJ_P0027099 Mbd6 protein_coding protein_coding MGP_C3HHeJ_T0027100.1 MGP_C3HHeJ_G0017578.1 mouse_genomes_project 10 129499130 129501416 - MGP_C3HHeJ_P0027100 Mbd6 protein_coding protein_coding MGP_C3HHeJ_T0025531.1 MGP_C3HHeJ_G0017123.1 mouse_genomes_project 10 75354292 75356097 - MGP_C3HHeJ_P0025531 Ddt protein_coding protein_coding MGP_C3HHeJ_T0025532.1 MGP_C3HHeJ_G0017123.1 mouse_genomes_project 10 75354295 75356477 - MGP_C3HHeJ_P0025532 Ddt protein_coding protein_coding MGP_C3HHeJ_T0025960.1 MGP_C3HHeJ_G0017250.1 mouse_genomes_project 10 80161947 80164150 + MGP_C3HHeJ_P0025960 1600002K03Rik protein_coding protein_coding MGP_C3HHeJ_T0026629.1 MGP_C3HHeJ_G0017416.1 mouse_genomes_project 10 94231028 94262577 + MGP_C3HHeJ_P0026629 Hal protein_coding protein_coding MGP_C3HHeJ_T0026630.1 MGP_C3HHeJ_G0017416.1 mouse_genomes_project 10 94231063 94259790 + MGP_C3HHeJ_P0026630 Hal protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026631.1 MGP_C3HHeJ_G0017416.1 mouse_genomes_project 10 94239455 94243629 + Hal protein_coding retained_intron MGP_C3HHeJ_T0026632.1 MGP_C3HHeJ_G0017416.1 mouse_genomes_project 10 94244096 94260007 + Hal protein_coding processed_transcript MGP_C3HHeJ_T0024589.1 MGP_C3HHeJ_G0016860.1 mouse_genomes_project 10 23891825 23982095 - MGP_C3HHeJ_P0024589 Tmem200a protein_coding protein_coding MGP_C3HHeJ_T0026873.1 MGP_C3HHeJ_G0017504.1 mouse_genomes_project 10 117268792 117281079 + MGP_C3HHeJ_P0026873 A930009A15Rik protein_coding protein_coding MGP_C3HHeJ_T0006069.1 MGP_C3HHeJ_G0005061.1 mouse_genomes_project 10 96231650 96242876 + 5730420D15Rik lincRNA lincRNA MGP_C3HHeJ_T0000799.1 MGP_C3HHeJ_G0000740.1 mouse_genomes_project 10 108683888 108684827 - TEC TEC MGP_C3HHeJ_T0024640.1 MGP_C3HHeJ_G0016878.1 mouse_genomes_project 10 28723899 28854071 - MGP_C3HHeJ_P0024640 Ncoa7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024641.1 MGP_C3HHeJ_G0016878.1 mouse_genomes_project 10 28723900 28734072 - MGP_C3HHeJ_P0024641 Ncoa7 protein_coding protein_coding MGP_C3HHeJ_T0024642.1 MGP_C3HHeJ_G0016878.1 mouse_genomes_project 10 28723900 28885388 - MGP_C3HHeJ_P0024642 Ncoa7 protein_coding protein_coding MGP_C3HHeJ_T0026711.1 MGP_C3HHeJ_G0017441.1 mouse_genomes_project 10 98400357 98440180 + MGP_C3HHeJ_P0026711 Dcn protein_coding protein_coding MGP_C3HHeJ_T0026712.1 MGP_C3HHeJ_G0017441.1 mouse_genomes_project 10 98403207 98440180 + MGP_C3HHeJ_P0026712 Dcn protein_coding protein_coding MGP_C3HHeJ_T0099923.1 MGP_C3HHeJ_G0038117.1 mouse_genomes_project 10 8987923 8988053 + Gm22546 snoRNA snoRNA MGP_C3HHeJ_T0025745.1 MGP_C3HHeJ_G0017185.1 mouse_genomes_project 10 78278543 78280494 + MGP_C3HHeJ_P0025745 Cstb protein_coding protein_coding MGP_C3HHeJ_T0024458.1 MGP_C3HHeJ_G0016811.1 mouse_genomes_project 10 17521882 17571036 - MGP_C3HHeJ_P0024458 Pex7 protein_coding protein_coding MGP_C3HHeJ_T0024459.1 MGP_C3HHeJ_G0016811.1 mouse_genomes_project 10 17522050 17571021 - MGP_C3HHeJ_P0024459 Pex7 protein_coding protein_coding MGP_C3HHeJ_T0024460.1 MGP_C3HHeJ_G0016811.1 mouse_genomes_project 10 17522742 17531613 - Pex7 protein_coding retained_intron MGP_C3HHeJ_T0024461.1 MGP_C3HHeJ_G0016811.1 mouse_genomes_project 10 17547190 17570892 - MGP_C3HHeJ_P0024461 Pex7 protein_coding protein_coding MGP_C3HHeJ_T0027203.1 MGP_C3HHeJ_G0017610.1 mouse_genomes_project 10 130381583 130418473 + MGP_C3HHeJ_P0027203 Baz2a protein_coding protein_coding MGP_C3HHeJ_T0027204.1 MGP_C3HHeJ_G0017610.1 mouse_genomes_project 10 130385860 130418476 + MGP_C3HHeJ_P0027204 Baz2a protein_coding unknown_likely_coding MGP_C3HHeJ_T0011195.1 MGP_C3HHeJ_G0009328.1 mouse_genomes_project 10 126598658 126598917 + Gm23777 misc_RNA misc_RNA MGP_C3HHeJ_T0012301.1 MGP_C3HHeJ_G0010405.1 mouse_genomes_project 10 40824413 40824891 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026551.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90492042 91617670 + MGP_C3HHeJ_P0026551 protein_coding protein_coding MGP_C3HHeJ_T0026552.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90492071 91139648 + MGP_C3HHeJ_P0026552 protein_coding protein_coding MGP_C3HHeJ_T0026553.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90492171 91613843 + MGP_C3HHeJ_P0026553 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026554.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90492205 91322428 + MGP_C3HHeJ_P0026554 protein_coding protein_coding MGP_C3HHeJ_T0026555.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90616901 90654682 + protein_coding processed_transcript MGP_C3HHeJ_T0026556.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90668816 90691667 + protein_coding processed_transcript MGP_C3HHeJ_T0026557.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 90691699 90699963 + MGP_C3HHeJ_P0026557 protein_coding protein_coding MGP_C3HHeJ_T0026558.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91206726 91620751 + MGP_C3HHeJ_P0026558 protein_coding protein_coding MGP_C3HHeJ_T0026559.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207242 91567201 + MGP_C3HHeJ_P0026559 protein_coding protein_coding MGP_C3HHeJ_T0026560.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207366 91617709 + MGP_C3HHeJ_P0026560 protein_coding protein_coding MGP_C3HHeJ_T0026561.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207504 91618910 + MGP_C3HHeJ_P0026561 protein_coding protein_coding MGP_C3HHeJ_T0026562.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207558 91619153 + MGP_C3HHeJ_P0026562 protein_coding protein_coding MGP_C3HHeJ_T0026563.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207600 91617663 + MGP_C3HHeJ_P0026563 protein_coding protein_coding MGP_C3HHeJ_T0026564.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207679 91618315 + MGP_C3HHeJ_P0026564 protein_coding protein_coding MGP_C3HHeJ_T0026565.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207706 91619115 + MGP_C3HHeJ_P0026565 protein_coding protein_coding MGP_C3HHeJ_T0026566.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207724 91619153 + MGP_C3HHeJ_P0026566 protein_coding protein_coding MGP_C3HHeJ_T0026567.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207737 91231610 + protein_coding processed_transcript MGP_C3HHeJ_T0026568.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207738 91218815 + MGP_C3HHeJ_P0026568 protein_coding protein_coding MGP_C3HHeJ_T0026569.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207754 91218962 + MGP_C3HHeJ_P0026569 protein_coding protein_coding MGP_C3HHeJ_T0026570.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207789 91618430 + MGP_C3HHeJ_P0026570 protein_coding protein_coding MGP_C3HHeJ_T0026571.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207803 91619442 + MGP_C3HHeJ_P0026571 protein_coding protein_coding MGP_C3HHeJ_T0026572.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207953 91617670 + MGP_C3HHeJ_P0026572 protein_coding protein_coding MGP_C3HHeJ_T0026573.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91207980 91617271 + MGP_C3HHeJ_P0026573 protein_coding protein_coding MGP_C3HHeJ_T0026574.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91474003 91543269 + protein_coding processed_transcript MGP_C3HHeJ_T0026575.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91474334 91617663 + MGP_C3HHeJ_P0026575 protein_coding protein_coding MGP_C3HHeJ_T0026576.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91474466 91618908 + MGP_C3HHeJ_P0026576 protein_coding protein_coding MGP_C3HHeJ_T0026577.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91474682 91618735 + MGP_C3HHeJ_P0026577 protein_coding protein_coding MGP_C3HHeJ_T0026578.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91474720 91560686 + protein_coding processed_transcript MGP_C3HHeJ_T0026579.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91474744 91567226 + protein_coding processed_transcript MGP_C3HHeJ_T0026580.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91541038 91572675 + MGP_C3HHeJ_P0026580 protein_coding protein_coding MGP_C3HHeJ_T0026581.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91541049 91618908 + MGP_C3HHeJ_P0026581 protein_coding protein_coding MGP_C3HHeJ_T0026582.1 MGP_C3HHeJ_G0017406.1 mouse_genomes_project 10 91541129 91617543 + MGP_C3HHeJ_P0026582 protein_coding protein_coding MGP_C3HHeJ_T0002983.1 MGP_C3HHeJ_G0002790.1 mouse_genomes_project 10 75943420 75945116 + Gm16240 antisense antisense MGP_C3HHeJ_T0009544.1 MGP_C3HHeJ_G0007677.1 mouse_genomes_project 10 123705615 123705691 - Gm24330 miRNA miRNA MGP_C3HHeJ_T0025796.1 MGP_C3HHeJ_G0017212.1 mouse_genomes_project 10 79599556 79606226 - MGP_C3HHeJ_P0025796 Odf3l2 protein_coding protein_coding MGP_C3HHeJ_T0006011.1 MGP_C3HHeJ_G0005022.1 mouse_genomes_project 10 21996767 22003787 + Gm15137 lincRNA lincRNA MGP_C3HHeJ_T0026182.1 MGP_C3HHeJ_G0017311.1 mouse_genomes_project 10 81344421 81363806 - MGP_C3HHeJ_P0026182 Tjp3 protein_coding protein_coding MGP_C3HHeJ_T0025674.1 MGP_C3HHeJ_G0017165.1 mouse_genomes_project 10 77429685 77430238 + MGP_C3HHeJ_P0025674 Gm10024 protein_coding protein_coding MGP_C3HHeJ_T0011182.1 MGP_C3HHeJ_G0009315.1 mouse_genomes_project 10 92757138 92757293 - Gm27544 misc_RNA misc_RNA MGP_C3HHeJ_T0026519.1 MGP_C3HHeJ_G0017396.1 mouse_genomes_project 10 89266490 89272482 + MGP_C3HHeJ_P0026519 Arl1 protein_coding protein_coding MGP_C3HHeJ_T0026520.1 MGP_C3HHeJ_G0017396.1 mouse_genomes_project 10 89266700 89280924 + MGP_C3HHeJ_P0026520 Arl1 protein_coding protein_coding MGP_C3HHeJ_T0026521.1 MGP_C3HHeJ_G0017396.1 mouse_genomes_project 10 89267193 89279532 + MGP_C3HHeJ_P0026521 Arl1 protein_coding protein_coding MGP_C3HHeJ_T0026801.1 MGP_C3HHeJ_G0017476.1 mouse_genomes_project 10 108773564 108990454 - MGP_C3HHeJ_P0026801 Ptprq protein_coding protein_coding MGP_C3HHeJ_T0025770.1 MGP_C3HHeJ_G0017202.1 mouse_genomes_project 10 78942605 78972839 - MGP_C3HHeJ_P0025770 2610008E11Rik protein_coding protein_coding MGP_C3HHeJ_T0024904.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44210319 44350529 + MGP_C3HHeJ_P0024904 Hace1 protein_coding protein_coding MGP_C3HHeJ_T0024905.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44210631 44244959 + MGP_C3HHeJ_P0024905 Hace1 protein_coding protein_coding MGP_C3HHeJ_T0024906.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44210770 44244913 + Hace1 protein_coding processed_transcript MGP_C3HHeJ_T0024907.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44227648 44290337 + Hace1 protein_coding processed_transcript MGP_C3HHeJ_T0024908.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44313930 44350343 + MGP_C3HHeJ_P0024908 Hace1 protein_coding protein_coding MGP_C3HHeJ_T0024909.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44314974 44350343 + MGP_C3HHeJ_P0024909 Hace1 protein_coding protein_coding MGP_C3HHeJ_T0024910.1 MGP_C3HHeJ_G0016971.1 mouse_genomes_project 10 44319533 44350455 + Hace1 protein_coding retained_intron MGP_C3HHeJ_T0026609.1 MGP_C3HHeJ_G0017411.1 mouse_genomes_project 10 93397043 93434633 - MGP_C3HHeJ_P0026609 Nedd1 protein_coding protein_coding MGP_C3HHeJ_T0025564.1 MGP_C3HHeJ_G0017137.1 mouse_genomes_project 10 75687412 75746990 - MGP_C3HHeJ_P0025564 Slc5a4b protein_coding protein_coding MGP_C3HHeJ_T0025260.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62402905 62474656 - MGP_C3HHeJ_P0025260 Sirt1 protein_coding protein_coding MGP_C3HHeJ_T0025261.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62402907 62423622 - MGP_C3HHeJ_P0025261 Sirt1 protein_coding protein_coding MGP_C3HHeJ_T0025262.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62402907 62423622 - MGP_C3HHeJ_P0025262 Sirt1 protein_coding protein_coding MGP_C3HHeJ_T0025263.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62402907 62421576 - MGP_C3HHeJ_P0025263 Sirt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025264.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62402958 62423625 - MGP_C3HHeJ_P0025264 Sirt1 protein_coding protein_coding MGP_C3HHeJ_T0025265.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62406047 62409521 - Sirt1 protein_coding retained_intron MGP_C3HHeJ_T0025266.1 MGP_C3HHeJ_G0017076.1 mouse_genomes_project 10 62415284 62421576 - Sirt1 protein_coding retained_intron MGP_C3HHeJ_T0026705.1 MGP_C3HHeJ_G0017435.1 mouse_genomes_project 10 96333833 96364650 + MGP_C3HHeJ_P0026705 Ube2n protein_coding protein_coding MGP_C3HHeJ_T0025542.1 MGP_C3HHeJ_G0017127.1 mouse_genomes_project 10 75402594 75420360 - MGP_C3HHeJ_P0025542 Gstt4 protein_coding protein_coding MGP_C3HHeJ_T0025543.1 MGP_C3HHeJ_G0017127.1 mouse_genomes_project 10 75402595 75420344 - MGP_C3HHeJ_P0025543 Gstt4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026736.1 MGP_C3HHeJ_G0017456.1 mouse_genomes_project 10 101291407 101299533 - MGP_C3HHeJ_P0026736 protein_coding protein_coding MGP_C3HHeJ_T0025051.1 MGP_C3HHeJ_G0017023.1 mouse_genomes_project 10 58824978 58827074 - MGP_C3HHeJ_P0025051 Ddit4 protein_coding protein_coding MGP_C3HHeJ_T0026134.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81154573 81173258 + MGP_C3HHeJ_P0026134 Map2k2 protein_coding protein_coding MGP_C3HHeJ_T0026135.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81154605 81172444 + MGP_C3HHeJ_P0026135 Map2k2 protein_coding protein_coding MGP_C3HHeJ_T0026136.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81154630 81172406 + MGP_C3HHeJ_P0026136 Map2k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026137.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81155003 81167686 + MGP_C3HHeJ_P0026137 Map2k2 protein_coding protein_coding MGP_C3HHeJ_T0026138.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81167172 81167888 + Map2k2 protein_coding retained_intron MGP_C3HHeJ_T0026139.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81169414 81171123 + Map2k2 protein_coding retained_intron MGP_C3HHeJ_T0026140.1 MGP_C3HHeJ_G0017299.1 mouse_genomes_project 10 81170720 81172488 + Map2k2 protein_coding retained_intron MGP_C3HHeJ_T0025793.1 MGP_C3HHeJ_G0017211.1 mouse_genomes_project 10 79578083 79582757 - Shc2 protein_coding retained_intron MGP_C3HHeJ_T0025794.1 MGP_C3HHeJ_G0017211.1 mouse_genomes_project 10 79580123 79583113 - Shc2 protein_coding retained_intron MGP_C3HHeJ_T0025795.1 MGP_C3HHeJ_G0017211.1 mouse_genomes_project 10 79581091 79597881 - MGP_C3HHeJ_P0025795 Shc2 protein_coding protein_coding MGP_C3HHeJ_T0024457.1 MGP_C3HHeJ_G0016810.1 mouse_genomes_project 10 17509874 17513417 - MGP_C3HHeJ_P0024457 Slc35d3 protein_coding protein_coding MGP_C3HHeJ_T0012325.1 MGP_C3HHeJ_G0010429.1 mouse_genomes_project 10 87465578 87465987 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024923.1 MGP_C3HHeJ_G0016977.1 mouse_genomes_project 10 50514488 50560029 + Rfx6 protein_coding retained_intron MGP_C3HHeJ_T0024924.1 MGP_C3HHeJ_G0016977.1 mouse_genomes_project 10 50514488 50568550 + MGP_C3HHeJ_P0024924 Rfx6 protein_coding protein_coding MGP_C3HHeJ_T0024925.1 MGP_C3HHeJ_G0016977.1 mouse_genomes_project 10 50522254 50568550 + MGP_C3HHeJ_P0024925 Rfx6 protein_coding protein_coding MGP_C3HHeJ_T0009501.1 MGP_C3HHeJ_G0007634.1 mouse_genomes_project 10 60067020 60067119 - Gm44308 miRNA miRNA MGP_C3HHeJ_T0009542.1 MGP_C3HHeJ_G0007675.1 mouse_genomes_project 10 118278823 118278918 - Gm25190 miRNA miRNA MGP_C3HHeJ_T0012293.1 MGP_C3HHeJ_G0010397.1 mouse_genomes_project 10 23745915 23746533 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024795.1 MGP_C3HHeJ_G0016935.1 mouse_genomes_project 10 39915679 39947002 + MGP_C3HHeJ_P0024795 Ppil6 protein_coding protein_coding MGP_C3HHeJ_T0026179.1 MGP_C3HHeJ_G0017309.1 mouse_genomes_project 10 81335934 81338151 - MGP_C3HHeJ_P0026179 Mrpl54 protein_coding protein_coding MGP_C3HHeJ_T0026180.1 MGP_C3HHeJ_G0017309.1 mouse_genomes_project 10 81336651 81338141 - Mrpl54 protein_coding retained_intron MGP_C3HHeJ_T0006027.1 MGP_C3HHeJ_G0005038.1 mouse_genomes_project 10 65323213 65464693 - 1700023F02Rik lincRNA lincRNA MGP_C3HHeJ_T0006028.1 MGP_C3HHeJ_G0005038.1 mouse_genomes_project 10 65323213 65326650 - 1700023F02Rik lincRNA lincRNA MGP_C3HHeJ_T0006029.1 MGP_C3HHeJ_G0005038.1 mouse_genomes_project 10 65323217 65326664 - 1700023F02Rik lincRNA lincRNA MGP_C3HHeJ_T0006030.1 MGP_C3HHeJ_G0005038.1 mouse_genomes_project 10 65323217 65326666 - 1700023F02Rik lincRNA lincRNA MGP_C3HHeJ_T0006031.1 MGP_C3HHeJ_G0005038.1 mouse_genomes_project 10 65323284 65325676 - 1700023F02Rik lincRNA lincRNA MGP_C3HHeJ_T0099971.1 MGP_C3HHeJ_G0038165.1 mouse_genomes_project 10 112277706 112277828 - Gm22186 snoRNA snoRNA MGP_C3HHeJ_T0025761.1 MGP_C3HHeJ_G0017197.1 mouse_genomes_project 10 78734098 78735159 + MGP_C3HHeJ_P0025761 protein_coding protein_coding MGP_C3HHeJ_T0002990.1 MGP_C3HHeJ_G0002796.1 mouse_genomes_project 10 80370864 80372126 + Gm15124 antisense antisense MGP_C3HHeJ_T0006038.1 MGP_C3HHeJ_G0005045.1 mouse_genomes_project 10 77693809 77696507 + 1700009J07Rik lincRNA lincRNA MGP_C3HHeJ_T0006039.1 MGP_C3HHeJ_G0005045.1 mouse_genomes_project 10 77693812 77696504 + 1700009J07Rik lincRNA lincRNA MGP_C3HHeJ_T0006040.1 MGP_C3HHeJ_G0005045.1 mouse_genomes_project 10 77693820 77694904 + 1700009J07Rik lincRNA lincRNA MGP_C3HHeJ_T0009515.1 MGP_C3HHeJ_G0007648.1 mouse_genomes_project 10 80270189 80270258 + Mir6911 miRNA miRNA MGP_C3HHeJ_T0002955.1 MGP_C3HHeJ_G0002769.1 mouse_genomes_project 10 37895818 37927059 - Gm16365 antisense antisense MGP_C3HHeJ_T0002956.1 MGP_C3HHeJ_G0002769.1 mouse_genomes_project 10 37897347 37953676 - Gm16365 antisense antisense MGP_C3HHeJ_T0002957.1 MGP_C3HHeJ_G0002769.1 mouse_genomes_project 10 37899702 37953680 - Gm16365 antisense antisense MGP_C3HHeJ_T0002958.1 MGP_C3HHeJ_G0002769.1 mouse_genomes_project 10 37934409 37953691 - Gm16365 antisense antisense MGP_C3HHeJ_T0025991.1 MGP_C3HHeJ_G0017257.1 mouse_genomes_project 10 80290716 80312979 + MGP_C3HHeJ_P0025991 Apc2 protein_coding protein_coding MGP_C3HHeJ_T0025992.1 MGP_C3HHeJ_G0017257.1 mouse_genomes_project 10 80293802 80297077 + MGP_C3HHeJ_P0025992 Apc2 protein_coding protein_coding MGP_C3HHeJ_T0025993.1 MGP_C3HHeJ_G0017257.1 mouse_genomes_project 10 80295558 80298071 + Apc2 protein_coding retained_intron MGP_C3HHeJ_T0025994.1 MGP_C3HHeJ_G0017257.1 mouse_genomes_project 10 80295745 80297063 + MGP_C3HHeJ_P0025994 Apc2 protein_coding protein_coding MGP_C3HHeJ_T0025995.1 MGP_C3HHeJ_G0017257.1 mouse_genomes_project 10 80295746 80297122 + MGP_C3HHeJ_P0025995 Apc2 protein_coding protein_coding MGP_C3HHeJ_T0025996.1 MGP_C3HHeJ_G0017257.1 mouse_genomes_project 10 80296535 80312972 + MGP_C3HHeJ_P0025996 Apc2 protein_coding protein_coding MGP_C3HHeJ_T0024951.1 MGP_C3HHeJ_G0016991.1 mouse_genomes_project 10 52492841 52505096 + MGP_C3HHeJ_P0024951 Asf1a protein_coding protein_coding MGP_C3HHeJ_T0101616.1 MGP_C3HHeJ_G0039582.1 mouse_genomes_project 10 106381325 106381484 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0025219.1 MGP_C3HHeJ_G0017066.1 mouse_genomes_project 10 61781337 61834001 - MGP_C3HHeJ_P0025219 Ccar1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027335.1 MGP_C3HHeJ_G0017662.1 mouse_genomes_project 10 131658763 131660922 - MGP_C3HHeJ_P0027335 Olfr777 protein_coding protein_coding MGP_C3HHeJ_T0027336.1 MGP_C3HHeJ_G0017662.1 mouse_genomes_project 10 131658763 131659699 - MGP_C3HHeJ_P0027336 Olfr777 protein_coding protein_coding MGP_C3HHeJ_T0024202.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902021 4198779 + MGP_C3HHeJ_P0024202 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024203.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902021 4137923 + MGP_C3HHeJ_P0024203 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024204.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 3977118 + MGP_C3HHeJ_P0024204 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024205.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 3997897 + MGP_C3HHeJ_P0024205 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024206.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 4199124 + MGP_C3HHeJ_P0024206 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024207.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 3998653 + MGP_C3HHeJ_P0024207 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024208.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 3997897 + MGP_C3HHeJ_P0024208 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024209.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 3997897 + MGP_C3HHeJ_P0024209 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024210.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3902108 3997897 + MGP_C3HHeJ_P0024210 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024211.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931642 3998387 + MGP_C3HHeJ_P0024211 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024212.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931735 4198755 + MGP_C3HHeJ_P0024212 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024213.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3981085 + MGP_C3HHeJ_P0024213 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024214.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3989379 + MGP_C3HHeJ_P0024214 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024215.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4198776 + MGP_C3HHeJ_P0024215 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024216.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4137973 + MGP_C3HHeJ_P0024216 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024217.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4199040 + MGP_C3HHeJ_P0024217 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024218.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4198779 + MGP_C3HHeJ_P0024218 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024219.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3989554 + MGP_C3HHeJ_P0024219 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024220.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3986689 + MGP_C3HHeJ_P0024220 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024221.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4199060 + MGP_C3HHeJ_P0024221 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024222.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4198755 + MGP_C3HHeJ_P0024222 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024223.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4137983 + MGP_C3HHeJ_P0024223 Oprm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024224.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3987928 + MGP_C3HHeJ_P0024224 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024225.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 4199764 + MGP_C3HHeJ_P0024225 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024226.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3978792 + MGP_C3HHeJ_P0024226 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024227.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931850 3989397 + MGP_C3HHeJ_P0024227 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024228.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931878 3980891 + MGP_C3HHeJ_P0024228 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024229.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3931878 3987963 + MGP_C3HHeJ_P0024229 Oprm1 protein_coding protein_coding MGP_C3HHeJ_T0024230.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3932016 4199060 + Oprm1 protein_coding processed_transcript MGP_C3HHeJ_T0024231.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3932066 3977065 + Oprm1 protein_coding processed_transcript MGP_C3HHeJ_T0024232.1 MGP_C3HHeJ_G0016751.1 mouse_genomes_project 10 3932140 3998026 + Oprm1 protein_coding processed_transcript MGP_C3HHeJ_T0003014.1 MGP_C3HHeJ_G0002814.1 mouse_genomes_project 10 94418255 94427358 - Gm15915 antisense antisense MGP_C3HHeJ_T0024883.1 MGP_C3HHeJ_G0016958.1 mouse_genomes_project 10 42483814 42530257 + MGP_C3HHeJ_P0024883 Rtn4ip1 protein_coding protein_coding MGP_C3HHeJ_T0024884.1 MGP_C3HHeJ_G0016958.1 mouse_genomes_project 10 42484396 42530266 + MGP_C3HHeJ_P0024884 Rtn4ip1 protein_coding protein_coding MGP_C3HHeJ_T0097980.1 MGP_C3HHeJ_G0036192.1 mouse_genomes_project 10 43289685 43289796 + Gm27977 rRNA rRNA MGP_C3HHeJ_T0024517.1 MGP_C3HHeJ_G0016826.1 mouse_genomes_project 10 19826151 19827756 - MGP_C3HHeJ_P0024517 protein_coding protein_coding MGP_C3HHeJ_T0024156.1 MGP_C3HHeJ_G0016738.1 mouse_genomes_project 10 1373390 1395058 - MGP_C3HHeJ_P0024156 Zbtb2 protein_coding protein_coding MGP_C3HHeJ_T0099951.1 MGP_C3HHeJ_G0038145.1 mouse_genomes_project 10 61977498 61977627 - Gm25862 snoRNA snoRNA MGP_C3HHeJ_T0027292.1 MGP_C3HHeJ_G0017639.1 mouse_genomes_project 10 131010082 131033221 - MGP_C3HHeJ_P0027292 Rab5b protein_coding protein_coding MGP_C3HHeJ_T0012317.1 MGP_C3HHeJ_G0010421.1 mouse_genomes_project 10 73204262 73204811 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025165.1 MGP_C3HHeJ_G0017053.1 mouse_genomes_project 10 61136241 61137915 + MGP_C3HHeJ_P0025165 Neurog3 protein_coding protein_coding MGP_C3HHeJ_T0009486.1 MGP_C3HHeJ_G0007619.1 mouse_genomes_project 10 22816516 22816586 + Mir6905 miRNA miRNA MGP_C3HHeJ_T0024518.1 MGP_C3HHeJ_G0016827.1 mouse_genomes_project 10 19876159 19912445 - MGP_C3HHeJ_P0024518 E030030I06Rik protein_coding protein_coding MGP_C3HHeJ_T0024519.1 MGP_C3HHeJ_G0016827.1 mouse_genomes_project 10 19907562 19911999 - E030030I06Rik protein_coding processed_transcript MGP_C3HHeJ_T0024520.1 MGP_C3HHeJ_G0016827.1 mouse_genomes_project 10 19907649 19912445 - MGP_C3HHeJ_P0024520 E030030I06Rik protein_coding protein_coding MGP_C3HHeJ_T0024521.1 MGP_C3HHeJ_G0016827.1 mouse_genomes_project 10 19911663 19911872 - E030030I06Rik protein_coding transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0000783.1 MGP_C3HHeJ_G0000725.1 mouse_genomes_project 10 16577590 16577880 - TEC TEC MGP_C3HHeJ_T0024800.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39976293 39990297 - protein_coding processed_transcript MGP_C3HHeJ_T0024801.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39976296 40046464 - MGP_C3HHeJ_P0024801 protein_coding protein_coding MGP_C3HHeJ_T0024802.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39976296 40026431 - MGP_C3HHeJ_P0024802 protein_coding protein_coding MGP_C3HHeJ_T0024803.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39976739 40156857 - MGP_C3HHeJ_P0024803 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024804.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39976862 40016888 - MGP_C3HHeJ_P0024804 protein_coding protein_coding MGP_C3HHeJ_T0024805.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39986375 39998374 - protein_coding retained_intron MGP_C3HHeJ_T0024806.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39988055 40156210 - MGP_C3HHeJ_P0024806 protein_coding protein_coding MGP_C3HHeJ_T0024807.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 39988174 39990865 - protein_coding retained_intron MGP_C3HHeJ_T0024808.1 MGP_C3HHeJ_G0016937.1 mouse_genomes_project 10 40017905 40026681 - protein_coding processed_transcript MGP_C3HHeJ_T0024191.1 MGP_C3HHeJ_G0016746.1 mouse_genomes_project 10 2703592 2711989 + MGP_C3HHeJ_P0024191 Vip protein_coding protein_coding MGP_C3HHeJ_T0026350.1 MGP_C3HHeJ_G0017347.1 mouse_genomes_project 10 83218761 83219418 + MGP_C3HHeJ_P0026350 Gm4799 protein_coding protein_coding MGP_C3HHeJ_T0026732.1 MGP_C3HHeJ_G0017454.1 mouse_genomes_project 10 100737212 100739204 - MGP_C3HHeJ_P0026732 Csl protein_coding protein_coding MGP_C3HHeJ_T0026683.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95067140 95192699 + Tmcc3 protein_coding retained_intron MGP_C3HHeJ_T0026684.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95067208 95345616 + MGP_C3HHeJ_P0026684 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0026685.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95067321 95128875 + Tmcc3 protein_coding processed_transcript MGP_C3HHeJ_T0026686.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95278642 95357808 + MGP_C3HHeJ_P0026686 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0026687.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95309548 95345742 + MGP_C3HHeJ_P0026687 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0026688.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95314961 95345487 + MGP_C3HHeJ_P0026688 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0026689.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95314981 95355606 + MGP_C3HHeJ_P0026689 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0026690.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95342076 95354937 + MGP_C3HHeJ_P0026690 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0026691.1 MGP_C3HHeJ_G0017429.1 mouse_genomes_project 10 95343082 95355650 + MGP_C3HHeJ_P0026691 Tmcc3 protein_coding protein_coding MGP_C3HHeJ_T0003022.1 MGP_C3HHeJ_G0002819.1 mouse_genomes_project 10 116462804 116477638 + Gm15723 antisense antisense MGP_C3HHeJ_T0026861.1 MGP_C3HHeJ_G0017502.1 mouse_genomes_project 10 117078042 117127658 + MGP_C3HHeJ_P0026861 Zfc3h1 protein_coding protein_coding MGP_C3HHeJ_T0026862.1 MGP_C3HHeJ_G0017502.1 mouse_genomes_project 10 117122244 117127657 + Zfc3h1 protein_coding retained_intron MGP_C3HHeJ_T0026863.1 MGP_C3HHeJ_G0017502.1 mouse_genomes_project 10 117123446 117125760 + Zfc3h1 protein_coding retained_intron MGP_C3HHeJ_T0026864.1 MGP_C3HHeJ_G0017502.1 mouse_genomes_project 10 117125964 117126648 + Zfc3h1 protein_coding retained_intron MGP_C3HHeJ_T0006092.1 MGP_C3HHeJ_G0005078.1 mouse_genomes_project 10 131320062 131326686 + 9030616G12Rik lincRNA lincRNA MGP_C3HHeJ_T0027171.1 MGP_C3HHeJ_G0017597.1 mouse_genomes_project 10 129997523 130001982 - MGP_C3HHeJ_P0027171 Gpr182 protein_coding protein_coding MGP_C3HHeJ_T0024705.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436868 37453544 - MGP_C3HHeJ_P0024705 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024706.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436872 37453538 - MGP_C3HHeJ_P0024706 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024707.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436874 37441503 - MGP_C3HHeJ_P0024707 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024708.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436874 37453486 - MGP_C3HHeJ_P0024708 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024709.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436882 37453538 - MGP_C3HHeJ_P0024709 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024710.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436883 37453538 - MGP_C3HHeJ_P0024710 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024711.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436884 37440715 - MGP_C3HHeJ_P0024711 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024712.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436888 37453552 - MGP_C3HHeJ_P0024712 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024713.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37436932 37453538 - MGP_C3HHeJ_P0024713 Fam229b protein_coding protein_coding MGP_C3HHeJ_T0024714.1 MGP_C3HHeJ_G0016908.1 mouse_genomes_project 10 37437683 37453495 - Fam229b protein_coding retained_intron MGP_C3HHeJ_T0000801.1 MGP_C3HHeJ_G0000742.1 mouse_genomes_project 10 113271738 113272036 + TEC TEC MGP_C3HHeJ_T0025997.1 MGP_C3HHeJ_G0017258.1 mouse_genomes_project 10 80312969 80315251 - MGP_C3HHeJ_P0025997 2310011J03Rik protein_coding protein_coding MGP_C3HHeJ_T0024553.1 MGP_C3HHeJ_G0016851.1 mouse_genomes_project 10 22095423 22172961 + MGP_C3HHeJ_P0024553 Moxd1 protein_coding protein_coding MGP_C3HHeJ_T0024554.1 MGP_C3HHeJ_G0016851.1 mouse_genomes_project 10 22095451 22103103 + Moxd1 protein_coding processed_transcript MGP_C3HHeJ_T0024885.1 MGP_C3HHeJ_G0016959.1 mouse_genomes_project 10 42532701 42589639 - MGP_C3HHeJ_P0024885 Aim1 protein_coding protein_coding MGP_C3HHeJ_T0024886.1 MGP_C3HHeJ_G0016959.1 mouse_genomes_project 10 42533030 42736809 - MGP_C3HHeJ_P0024886 Aim1 protein_coding protein_coding MGP_C3HHeJ_T0024587.1 MGP_C3HHeJ_G0016859.1 mouse_genomes_project 10 23448720 23457242 - MGP_C3HHeJ_P0024587 Smlr1 protein_coding protein_coding MGP_C3HHeJ_T0024588.1 MGP_C3HHeJ_G0016859.1 mouse_genomes_project 10 23453025 23457117 - Smlr1 protein_coding retained_intron MGP_C3HHeJ_T0025226.1 MGP_C3HHeJ_G0017068.1 mouse_genomes_project 10 61974735 62008468 + MGP_C3HHeJ_P0025226 Slc25a16 protein_coding protein_coding MGP_C3HHeJ_T0025227.1 MGP_C3HHeJ_G0017068.1 mouse_genomes_project 10 61974769 61992133 + Slc25a16 protein_coding retained_intron MGP_C3HHeJ_T0025228.1 MGP_C3HHeJ_G0017068.1 mouse_genomes_project 10 61974782 62006399 + MGP_C3HHeJ_P0025228 Slc25a16 protein_coding protein_coding MGP_C3HHeJ_T0025229.1 MGP_C3HHeJ_G0017068.1 mouse_genomes_project 10 62004411 62006404 + Slc25a16 protein_coding retained_intron MGP_C3HHeJ_T0025962.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80218088 80235558 + MGP_C3HHeJ_P0025962 Mum1 protein_coding protein_coding MGP_C3HHeJ_T0025963.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80218309 80235555 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025964.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80218326 80224335 + MGP_C3HHeJ_P0025964 Mum1 protein_coding protein_coding MGP_C3HHeJ_T0025965.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80218334 80235553 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025966.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80218405 80220826 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025967.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80225848 80235558 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025968.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80225849 80228769 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025969.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80225914 80235556 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025970.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80227765 80232047 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025971.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80233192 80235555 + Mum1 protein_coding retained_intron MGP_C3HHeJ_T0025972.1 MGP_C3HHeJ_G0017252.1 mouse_genomes_project 10 80234266 80235555 + Mum1 protein_coding processed_transcript MGP_C3HHeJ_T0024245.1 MGP_C3HHeJ_G0016755.1 mouse_genomes_project 10 4767015 4786317 + MGP_C3HHeJ_P0024245 Lrp11 protein_coding protein_coding MGP_C3HHeJ_T0024246.1 MGP_C3HHeJ_G0016755.1 mouse_genomes_project 10 4767032 4803786 + MGP_C3HHeJ_P0024246 Lrp11 protein_coding protein_coding MGP_C3HHeJ_T0024247.1 MGP_C3HHeJ_G0016755.1 mouse_genomes_project 10 4767194 4803786 + MGP_C3HHeJ_P0024247 Lrp11 protein_coding protein_coding MGP_C3HHeJ_T0024248.1 MGP_C3HHeJ_G0016755.1 mouse_genomes_project 10 4767342 4802325 + MGP_C3HHeJ_P0024248 Lrp11 protein_coding protein_coding MGP_C3HHeJ_T0024249.1 MGP_C3HHeJ_G0016755.1 mouse_genomes_project 10 4773633 4802055 + MGP_C3HHeJ_P0024249 Lrp11 protein_coding protein_coding MGP_C3HHeJ_T0024538.1 MGP_C3HHeJ_G0016836.1 mouse_genomes_project 10 21764823 21765937 + MGP_C3HHeJ_P0024538 Taar1 protein_coding protein_coding MGP_C3HHeJ_T0026322.1 MGP_C3HHeJ_G0017341.1 mouse_genomes_project 10 82849248 82862645 - MGP_C3HHeJ_P0026322 protein_coding protein_coding MGP_C3HHeJ_T0024880.1 MGP_C3HHeJ_G0016957.1 mouse_genomes_project 10 42458406 42483753 - MGP_C3HHeJ_P0024880 Qrsl1 protein_coding protein_coding MGP_C3HHeJ_T0024881.1 MGP_C3HHeJ_G0016957.1 mouse_genomes_project 10 42458640 42461323 - Qrsl1 protein_coding retained_intron MGP_C3HHeJ_T0024882.1 MGP_C3HHeJ_G0016957.1 mouse_genomes_project 10 42463127 42483753 - Qrsl1 protein_coding retained_intron MGP_C3HHeJ_T0025112.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60114854 60135445 + MGP_C3HHeJ_P0025112 Tbata protein_coding protein_coding MGP_C3HHeJ_T0025113.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60114864 60123380 + MGP_C3HHeJ_P0025113 Tbata protein_coding protein_coding MGP_C3HHeJ_T0025114.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60114886 60135450 + MGP_C3HHeJ_P0025114 Tbata protein_coding protein_coding MGP_C3HHeJ_T0025115.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60117270 60127599 + MGP_C3HHeJ_P0025115 Tbata protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025116.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60118162 60123377 + Tbata protein_coding processed_transcript MGP_C3HHeJ_T0025117.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60118162 60123377 + Tbata protein_coding processed_transcript MGP_C3HHeJ_T0025118.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60118162 60123377 + Tbata protein_coding processed_transcript MGP_C3HHeJ_T0025119.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60118162 60123376 + MGP_C3HHeJ_P0025119 Tbata protein_coding protein_coding MGP_C3HHeJ_T0025120.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60118291 60123377 + Tbata protein_coding processed_transcript MGP_C3HHeJ_T0025121.1 MGP_C3HHeJ_G0017036.1 mouse_genomes_project 10 60118840 60135448 + MGP_C3HHeJ_P0025121 Tbata protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026408.1 MGP_C3HHeJ_G0017367.1 mouse_genomes_project 10 86222852 86224809 + MGP_C3HHeJ_P0026408 Gm5174 protein_coding protein_coding MGP_C3HHeJ_T0026349.1 MGP_C3HHeJ_G0017346.1 mouse_genomes_project 10 83120347 83159324 + MGP_C3HHeJ_P0026349 protein_coding protein_coding MGP_C3HHeJ_T0024539.1 MGP_C3HHeJ_G0016837.1 mouse_genomes_project 10 21784480 21787492 + MGP_C3HHeJ_P0024539 Taar2 protein_coding protein_coding MGP_C3HHeJ_T0006023.1 MGP_C3HHeJ_G0005034.1 mouse_genomes_project 10 59979367 59986806 - Gm20610 lincRNA lincRNA MGP_C3HHeJ_T0025604.1 MGP_C3HHeJ_G0017150.1 mouse_genomes_project 10 76389466 76406837 - MGP_C3HHeJ_P0025604 Col6a1 protein_coding protein_coding MGP_C3HHeJ_T0025605.1 MGP_C3HHeJ_G0017150.1 mouse_genomes_project 10 76395690 76399917 - Col6a1 protein_coding retained_intron MGP_C3HHeJ_T0002976.1 MGP_C3HHeJ_G0002784.1 mouse_genomes_project 10 67330637 67331488 - Gm16212 antisense antisense MGP_C3HHeJ_T0002977.1 MGP_C3HHeJ_G0002784.1 mouse_genomes_project 10 67331210 67331811 - Gm16212 antisense antisense MGP_C3HHeJ_T0009494.1 MGP_C3HHeJ_G0007627.1 mouse_genomes_project 10 44459733 44459848 - Gm27410 miRNA miRNA MGP_C3HHeJ_T0024537.1 MGP_C3HHeJ_G0016835.1 mouse_genomes_project 10 21735504 21747523 + MGP_C3HHeJ_P0024537 Vnn1 protein_coding protein_coding MGP_C3HHeJ_T0025754.1 MGP_C3HHeJ_G0017192.1 mouse_genomes_project 10 78604453 78610571 - MGP_C3HHeJ_P0025754 Ccdc105 protein_coding protein_coding MGP_C3HHeJ_T0005993.1 MGP_C3HHeJ_G0005009.1 mouse_genomes_project 10 1399182 1404073 + Gm21781 lincRNA lincRNA MGP_C3HHeJ_T0101342.1 MGP_C3HHeJ_G0039418.1 mouse_genomes_project 10 19873622 19876416 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0099964.1 MGP_C3HHeJ_G0038158.1 mouse_genomes_project 10 102615787 102615919 + Gm26278 snoRNA snoRNA MGP_C3HHeJ_T0002965.1 MGP_C3HHeJ_G0002775.1 mouse_genomes_project 10 41728290 41728584 + antisense antisense MGP_C3HHeJ_T0027291.1 MGP_C3HHeJ_G0017638.1 mouse_genomes_project 10 131002716 131006748 - MGP_C3HHeJ_P0027291 Suox protein_coding protein_coding MGP_C3HHeJ_T0027184.1 MGP_C3HHeJ_G0017606.1 mouse_genomes_project 10 130288610 130307139 + MGP_C3HHeJ_P0027184 Prim1 protein_coding protein_coding MGP_C3HHeJ_T0027185.1 MGP_C3HHeJ_G0017606.1 mouse_genomes_project 10 130288614 130307193 + MGP_C3HHeJ_P0027185 Prim1 protein_coding protein_coding MGP_C3HHeJ_T0027186.1 MGP_C3HHeJ_G0017606.1 mouse_genomes_project 10 130288638 130307021 + Prim1 protein_coding retained_intron MGP_C3HHeJ_T0027187.1 MGP_C3HHeJ_G0017606.1 mouse_genomes_project 10 130294371 130296530 + Prim1 protein_coding retained_intron MGP_C3HHeJ_T0027188.1 MGP_C3HHeJ_G0017606.1 mouse_genomes_project 10 130303842 130307189 + Prim1 protein_coding retained_intron MGP_C3HHeJ_T0024590.1 MGP_C3HHeJ_G0016861.1 mouse_genomes_project 10 23981297 23982490 + MGP_C3HHeJ_P0024590 Gm9767 protein_coding protein_coding MGP_C3HHeJ_T0027242.1 MGP_C3HHeJ_G0017622.1 mouse_genomes_project 10 130650875 130675925 + MGP_C3HHeJ_P0027242 Cs protein_coding protein_coding MGP_C3HHeJ_T0026440.1 MGP_C3HHeJ_G0017377.1 mouse_genomes_project 10 87156301 87167738 - Hsp90b1 protein_coding retained_intron MGP_C3HHeJ_T0026441.1 MGP_C3HHeJ_G0017377.1 mouse_genomes_project 10 87156941 87171275 - MGP_C3HHeJ_P0026441 Hsp90b1 protein_coding protein_coding MGP_C3HHeJ_T0026442.1 MGP_C3HHeJ_G0017377.1 mouse_genomes_project 10 87158503 87164208 - MGP_C3HHeJ_P0026442 Hsp90b1 protein_coding protein_coding MGP_C3HHeJ_T0026443.1 MGP_C3HHeJ_G0017377.1 mouse_genomes_project 10 87160123 87161824 - Hsp90b1 protein_coding retained_intron MGP_C3HHeJ_T0026444.1 MGP_C3HHeJ_G0017377.1 mouse_genomes_project 10 87167715 87168859 - Hsp90b1 protein_coding retained_intron MGP_C3HHeJ_T0025021.1 MGP_C3HHeJ_G0017016.1 mouse_genomes_project 10 58171460 58222071 + MGP_C3HHeJ_P0025021 P4ha1 protein_coding protein_coding MGP_C3HHeJ_T0025022.1 MGP_C3HHeJ_G0017016.1 mouse_genomes_project 10 58171528 58220667 + MGP_C3HHeJ_P0025022 P4ha1 protein_coding protein_coding MGP_C3HHeJ_T0025023.1 MGP_C3HHeJ_G0017016.1 mouse_genomes_project 10 58171532 58220962 + MGP_C3HHeJ_P0025023 P4ha1 protein_coding protein_coding MGP_C3HHeJ_T0002989.1 MGP_C3HHeJ_G0002795.1 mouse_genomes_project 10 80370807 80371342 + Gm15123 antisense antisense MGP_C3HHeJ_T0027364.1 MGP_C3HHeJ_G0017682.1 mouse_genomes_project 10 132075897 132076824 - MGP_C3HHeJ_P0027364 Olfr803 protein_coding protein_coding MGP_C3HHeJ_T0098734.1 MGP_C3HHeJ_G0036928.1 mouse_genomes_project 10 93194872 93194934 + Gm25884 snRNA snRNA MGP_C3HHeJ_T0024969.1 MGP_C3HHeJ_G0016997.1 mouse_genomes_project 10 55780377 55784098 + MGP_C3HHeJ_P0024969 Gm9956 protein_coding protein_coding MGP_C3HHeJ_T0025941.1 MGP_C3HHeJ_G0017247.1 mouse_genomes_project 10 80127213 80130997 + Atp5d protein_coding processed_transcript MGP_C3HHeJ_T0025942.1 MGP_C3HHeJ_G0017247.1 mouse_genomes_project 10 80128133 80134419 + MGP_C3HHeJ_P0025942 Atp5d protein_coding unknown_likely_coding MGP_C3HHeJ_T0025943.1 MGP_C3HHeJ_G0017247.1 mouse_genomes_project 10 80130053 80134410 + MGP_C3HHeJ_P0025943 Atp5d protein_coding protein_coding MGP_C3HHeJ_T0025944.1 MGP_C3HHeJ_G0017247.1 mouse_genomes_project 10 80130911 80134415 + MGP_C3HHeJ_P0025944 Atp5d protein_coding protein_coding MGP_C3HHeJ_T0025945.1 MGP_C3HHeJ_G0017247.1 mouse_genomes_project 10 80130966 80134409 + MGP_C3HHeJ_P0025945 Atp5d protein_coding protein_coding MGP_C3HHeJ_T0097984.1 MGP_C3HHeJ_G0036196.1 mouse_genomes_project 10 95599017 95599144 - Gm24186 rRNA rRNA MGP_C3HHeJ_T0025675.1 MGP_C3HHeJ_G0017166.1 mouse_genomes_project 10 77434035 77434398 + MGP_C3HHeJ_P0025675 Gm10142 protein_coding protein_coding MGP_C3HHeJ_T0024929.1 MGP_C3HHeJ_G0016980.1 mouse_genomes_project 10 50879511 51035841 - MGP_C3HHeJ_P0024929 Ros1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024930.1 MGP_C3HHeJ_G0016980.1 mouse_genomes_project 10 50879716 51036129 - MGP_C3HHeJ_P0024930 Ros1 protein_coding protein_coding MGP_C3HHeJ_T0024931.1 MGP_C3HHeJ_G0016980.1 mouse_genomes_project 10 50879806 51035841 - MGP_C3HHeJ_P0024931 Ros1 protein_coding protein_coding MGP_C3HHeJ_T0024932.1 MGP_C3HHeJ_G0016980.1 mouse_genomes_project 10 50879806 51035841 - MGP_C3HHeJ_P0024932 Ros1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026388.1 MGP_C3HHeJ_G0017359.1 mouse_genomes_project 10 85115698 85272922 + MGP_C3HHeJ_P0026388 Rfx4 protein_coding protein_coding MGP_C3HHeJ_T0026389.1 MGP_C3HHeJ_G0017359.1 mouse_genomes_project 10 85121439 85174282 + Rfx4 protein_coding processed_transcript MGP_C3HHeJ_T0026390.1 MGP_C3HHeJ_G0017359.1 mouse_genomes_project 10 85121439 85174282 + Rfx4 protein_coding processed_transcript MGP_C3HHeJ_T0026391.1 MGP_C3HHeJ_G0017359.1 mouse_genomes_project 10 85197821 85238101 + Rfx4 protein_coding processed_transcript MGP_C3HHeJ_T0026392.1 MGP_C3HHeJ_G0017359.1 mouse_genomes_project 10 85197821 85272917 + MGP_C3HHeJ_P0026392 Rfx4 protein_coding protein_coding MGP_C3HHeJ_T0026802.1 MGP_C3HHeJ_G0017477.1 mouse_genomes_project 10 109040282 109194437 - MGP_C3HHeJ_P0026802 Otogl protein_coding protein_coding MGP_C3HHeJ_T0016905.1 MGP_C3HHeJ_G0014900.1 mouse_genomes_project 10 106740619 106748704 + Gm15663 processed_transcript antisense MGP_C3HHeJ_T0016906.1 MGP_C3HHeJ_G0014900.1 mouse_genomes_project 10 106741225 106750538 + Gm15663 processed_transcript lincRNA MGP_C3HHeJ_T0027042.1 MGP_C3HHeJ_G0017559.1 mouse_genomes_project 10 129043289 129079677 - MGP_C3HHeJ_P0027042 Xrcc6bp1 protein_coding protein_coding MGP_C3HHeJ_T0027043.1 MGP_C3HHeJ_G0017559.1 mouse_genomes_project 10 129064088 129079677 - MGP_C3HHeJ_P0027043 Xrcc6bp1 protein_coding protein_coding MGP_C3HHeJ_T0026831.1 MGP_C3HHeJ_G0017486.1 mouse_genomes_project 10 112717945 112721003 + MGP_C3HHeJ_P0026831 Bbs10 protein_coding protein_coding MGP_C3HHeJ_T0026803.1 MGP_C3HHeJ_G0017478.1 mouse_genomes_project 10 109448397 109568349 + MGP_C3HHeJ_P0026803 Ppp1r12a protein_coding unknown_likely_coding MGP_C3HHeJ_T0026804.1 MGP_C3HHeJ_G0017478.1 mouse_genomes_project 10 109448458 109565936 + MGP_C3HHeJ_P0026804 Ppp1r12a protein_coding protein_coding MGP_C3HHeJ_T0024288.1 MGP_C3HHeJ_G0016764.1 mouse_genomes_project 10 5441146 5769972 - MGP_C3HHeJ_P0024288 Ust protein_coding protein_coding MGP_C3HHeJ_T0024439.1 MGP_C3HHeJ_G0016802.1 mouse_genomes_project 10 16430211 16437461 - MGP_C3HHeJ_P0024439 Gm4922 protein_coding protein_coding MGP_C3HHeJ_T0024716.1 MGP_C3HHeJ_G0016910.1 mouse_genomes_project 10 37471486 37484871 - MGP_C3HHeJ_P0024716 Wisp3 protein_coding protein_coding MGP_C3HHeJ_T0026851.1 MGP_C3HHeJ_G0017495.1 mouse_genomes_project 10 114499826 114502481 + MGP_C3HHeJ_P0026851 Gm26596 protein_coding protein_coding MGP_C3HHeJ_T0009557.1 MGP_C3HHeJ_G0007690.1 mouse_genomes_project 10 130716040 130716116 + Gm25361 miRNA miRNA MGP_C3HHeJ_T0026832.1 MGP_C3HHeJ_G0017487.1 mouse_genomes_project 10 112912439 112936563 + MGP_C3HHeJ_P0026832 Nap1l1 protein_coding protein_coding MGP_C3HHeJ_T0026833.1 MGP_C3HHeJ_G0017487.1 mouse_genomes_project 10 112919859 112937819 + MGP_C3HHeJ_P0026833 Nap1l1 protein_coding protein_coding MGP_C3HHeJ_T0026321.1 MGP_C3HHeJ_G0017340.1 mouse_genomes_project 10 82658944 82665025 - MGP_C3HHeJ_P0026321 Gm1553 protein_coding protein_coding MGP_C3HHeJ_T0024687.1 MGP_C3HHeJ_G0016903.1 mouse_genomes_project 10 34736416 35079751 + MGP_C3HHeJ_P0024687 Hs3st5 protein_coding protein_coding MGP_C3HHeJ_T0024688.1 MGP_C3HHeJ_G0016903.1 mouse_genomes_project 10 34736421 35080367 + MGP_C3HHeJ_P0024688 Hs3st5 protein_coding protein_coding MGP_C3HHeJ_T0024689.1 MGP_C3HHeJ_G0016903.1 mouse_genomes_project 10 34736491 34940773 + Hs3st5 protein_coding retained_intron MGP_C3HHeJ_T0024690.1 MGP_C3HHeJ_G0016903.1 mouse_genomes_project 10 34736628 35080375 + MGP_C3HHeJ_P0024690 Hs3st5 protein_coding protein_coding MGP_C3HHeJ_T0024691.1 MGP_C3HHeJ_G0016903.1 mouse_genomes_project 10 34737009 35056265 + Hs3st5 protein_coding processed_transcript MGP_C3HHeJ_T0026950.1 MGP_C3HHeJ_G0017532.1 mouse_genomes_project 10 121137063 121177267 - MGP_C3HHeJ_P0026950 Cand1 protein_coding protein_coding MGP_C3HHeJ_T0026951.1 MGP_C3HHeJ_G0017532.1 mouse_genomes_project 10 121144127 121146014 - Cand1 protein_coding retained_intron MGP_C3HHeJ_T0026952.1 MGP_C3HHeJ_G0017532.1 mouse_genomes_project 10 121149583 121150414 - Cand1 protein_coding retained_intron MGP_C3HHeJ_T0026953.1 MGP_C3HHeJ_G0017532.1 mouse_genomes_project 10 121154281 121176515 - MGP_C3HHeJ_P0026953 Cand1 protein_coding protein_coding MGP_C3HHeJ_T0026779.1 MGP_C3HHeJ_G0017468.1 mouse_genomes_project 10 106327636 106378141 - Tmtc2 protein_coding processed_transcript MGP_C3HHeJ_T0026780.1 MGP_C3HHeJ_G0017468.1 mouse_genomes_project 10 106327636 106741102 - MGP_C3HHeJ_P0026780 Tmtc2 protein_coding protein_coding MGP_C3HHeJ_T0026781.1 MGP_C3HHeJ_G0017468.1 mouse_genomes_project 10 106329477 106378126 - Tmtc2 protein_coding processed_transcript MGP_C3HHeJ_T0026782.1 MGP_C3HHeJ_G0017468.1 mouse_genomes_project 10 106329636 106339704 - Tmtc2 protein_coding processed_transcript MGP_C3HHeJ_T0026783.1 MGP_C3HHeJ_G0017468.1 mouse_genomes_project 10 106419718 106741118 - Tmtc2 protein_coding retained_intron MGP_C3HHeJ_T0026784.1 MGP_C3HHeJ_G0017468.1 mouse_genomes_project 10 106574013 106699386 - Tmtc2 protein_coding processed_transcript MGP_C3HHeJ_T0003000.1 MGP_C3HHeJ_G0002804.1 mouse_genomes_project 10 82333735 82356710 + Gm15608 antisense antisense MGP_C3HHeJ_T0003001.1 MGP_C3HHeJ_G0002804.1 mouse_genomes_project 10 82340595 82356691 + Gm15608 antisense antisense MGP_C3HHeJ_T0024763.1 MGP_C3HHeJ_G0016925.1 mouse_genomes_project 10 39015110 39037951 + MGP_C3HHeJ_P0024763 Ddo protein_coding protein_coding MGP_C3HHeJ_T0006086.1 MGP_C3HHeJ_G0005072.1 mouse_genomes_project 10 121015581 121026787 + 1700064J06Rik lincRNA lincRNA MGP_C3HHeJ_T0024629.1 MGP_C3HHeJ_G0016873.1 mouse_genomes_project 10 27372816 27391077 - MGP_C3HHeJ_P0024629 Rnf146 protein_coding protein_coding MGP_C3HHeJ_T0024630.1 MGP_C3HHeJ_G0016873.1 mouse_genomes_project 10 27374809 27391077 - MGP_C3HHeJ_P0024630 Rnf146 protein_coding protein_coding MGP_C3HHeJ_T0024631.1 MGP_C3HHeJ_G0016873.1 mouse_genomes_project 10 27374814 27390675 - MGP_C3HHeJ_P0024631 Rnf146 protein_coding protein_coding MGP_C3HHeJ_T0024632.1 MGP_C3HHeJ_G0016873.1 mouse_genomes_project 10 27375296 27386352 - MGP_C3HHeJ_P0024632 Rnf146 protein_coding protein_coding MGP_C3HHeJ_T0024633.1 MGP_C3HHeJ_G0016873.1 mouse_genomes_project 10 27375857 27390658 - MGP_C3HHeJ_P0024633 Rnf146 protein_coding protein_coding MGP_C3HHeJ_T0025303.1 MGP_C3HHeJ_G0017088.1 mouse_genomes_project 10 67188040 67214617 - MGP_C3HHeJ_P0025303 Zfp365 protein_coding protein_coding MGP_C3HHeJ_T0025304.1 MGP_C3HHeJ_G0017088.1 mouse_genomes_project 10 67188105 67203213 - Zfp365 protein_coding processed_transcript MGP_C3HHeJ_T0025305.1 MGP_C3HHeJ_G0017088.1 mouse_genomes_project 10 67191892 67200899 - Zfp365 protein_coding processed_transcript MGP_C3HHeJ_T0025306.1 MGP_C3HHeJ_G0017088.1 mouse_genomes_project 10 67198596 67214390 - Zfp365 protein_coding retained_intron MGP_C3HHeJ_T0025062.1 MGP_C3HHeJ_G0017026.1 mouse_genomes_project 10 58990706 59015613 + Spock2 protein_coding retained_intron MGP_C3HHeJ_T0025063.1 MGP_C3HHeJ_G0017026.1 mouse_genomes_project 10 58990706 59025350 + MGP_C3HHeJ_P0025063 Spock2 protein_coding protein_coding MGP_C3HHeJ_T0025064.1 MGP_C3HHeJ_G0017026.1 mouse_genomes_project 10 58990955 59025356 + MGP_C3HHeJ_P0025064 Spock2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025065.1 MGP_C3HHeJ_G0017026.1 mouse_genomes_project 10 58990955 59024060 + MGP_C3HHeJ_P0025065 Spock2 protein_coding protein_coding MGP_C3HHeJ_T0006048.1 MGP_C3HHeJ_G0005052.1 mouse_genomes_project 10 84973316 84976569 - Gm17249 lincRNA lincRNA MGP_C3HHeJ_T0101626.1 MGP_C3HHeJ_G0039592.1 mouse_genomes_project 10 132549215 132549967 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0026433.1 MGP_C3HHeJ_G0017375.1 mouse_genomes_project 10 86733147 86783261 + MGP_C3HHeJ_P0026433 Timp3 protein_coding protein_coding MGP_C3HHeJ_T0026434.1 MGP_C3HHeJ_G0017375.1 mouse_genomes_project 10 86733329 86739524 + Timp3 protein_coding processed_transcript MGP_C3HHeJ_T0026435.1 MGP_C3HHeJ_G0017375.1 mouse_genomes_project 10 86733331 86759861 + Timp3 protein_coding processed_transcript MGP_C3HHeJ_T0026436.1 MGP_C3HHeJ_G0017375.1 mouse_genomes_project 10 86735624 86777747 + MGP_C3HHeJ_P0026436 Timp3 protein_coding protein_coding MGP_C3HHeJ_T0009555.1 MGP_C3HHeJ_G0007688.1 mouse_genomes_project 10 130696093 130696162 + Mir6914 miRNA miRNA MGP_C3HHeJ_T0009493.1 MGP_C3HHeJ_G0007626.1 mouse_genomes_project 10 43732369 43732449 - Gm23766 miRNA miRNA MGP_C3HHeJ_T0000803.1 MGP_C3HHeJ_G0000744.1 mouse_genomes_project 10 115987801 115988116 + TEC TEC MGP_C3HHeJ_T0026384.1 MGP_C3HHeJ_G0017357.1 mouse_genomes_project 10 84927470 84966835 + MGP_C3HHeJ_P0026384 Tcp11l2 protein_coding protein_coding MGP_C3HHeJ_T0026385.1 MGP_C3HHeJ_G0017357.1 mouse_genomes_project 10 84927741 84946781 + Tcp11l2 protein_coding retained_intron MGP_C3HHeJ_T0026386.1 MGP_C3HHeJ_G0017357.1 mouse_genomes_project 10 84946135 84957438 + Tcp11l2 protein_coding retained_intron MGP_C3HHeJ_T0025400.1 MGP_C3HHeJ_G0017101.1 mouse_genomes_project 10 70293419 70353851 + MGP_C3HHeJ_P0025400 4930533K18Rik protein_coding protein_coding MGP_C3HHeJ_T0012327.1 MGP_C3HHeJ_G0010431.1 mouse_genomes_project 10 97277912 97278101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024850.1 MGP_C3HHeJ_G0016948.1 mouse_genomes_project 10 41294121 41366245 + MGP_C3HHeJ_P0024850 Sec63 protein_coding protein_coding MGP_C3HHeJ_T0024851.1 MGP_C3HHeJ_G0016948.1 mouse_genomes_project 10 41294240 41364123 + Sec63 protein_coding retained_intron MGP_C3HHeJ_T0024852.1 MGP_C3HHeJ_G0016948.1 mouse_genomes_project 10 41294431 41346660 + Sec63 protein_coding retained_intron MGP_C3HHeJ_T0024853.1 MGP_C3HHeJ_G0016948.1 mouse_genomes_project 10 41351845 41363011 + Sec63 protein_coding processed_transcript MGP_C3HHeJ_T0024854.1 MGP_C3HHeJ_G0016948.1 mouse_genomes_project 10 41351845 41363014 + Sec63 protein_coding processed_transcript MGP_C3HHeJ_T0012282.1 MGP_C3HHeJ_G0010386.1 mouse_genomes_project 10 5015537 5016180 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024188.1 MGP_C3HHeJ_G0016744.1 mouse_genomes_project 10 2104365 2107149 + MGP_C3HHeJ_P0024188 Gm10097 protein_coding protein_coding MGP_C3HHeJ_T0098240.1 MGP_C3HHeJ_G0036452.1 mouse_genomes_project 10 26932655 26932809 - Gm22811 ribozyme ribozyme MGP_C3HHeJ_T0024655.1 MGP_C3HHeJ_G0016884.1 mouse_genomes_project 10 29800474 31010680 - MGP_C3HHeJ_P0024655 Nkain2 protein_coding protein_coding MGP_C3HHeJ_T0024656.1 MGP_C3HHeJ_G0016884.1 mouse_genomes_project 10 30442614 30528713 - MGP_C3HHeJ_P0024656 Nkain2 protein_coding protein_coding MGP_C3HHeJ_T0024657.1 MGP_C3HHeJ_G0016884.1 mouse_genomes_project 10 31010123 31010681 - MGP_C3HHeJ_P0024657 Nkain2 protein_coding protein_coding MGP_C3HHeJ_T0025547.1 MGP_C3HHeJ_G0017131.1 mouse_genomes_project 10 75501394 75527071 - MGP_C3HHeJ_P0025547 Smarcb1 protein_coding protein_coding MGP_C3HHeJ_T0025548.1 MGP_C3HHeJ_G0017131.1 mouse_genomes_project 10 75501398 75518421 - Smarcb1 protein_coding retained_intron MGP_C3HHeJ_T0025549.1 MGP_C3HHeJ_G0017131.1 mouse_genomes_project 10 75501400 75522039 - Smarcb1 protein_coding retained_intron MGP_C3HHeJ_T0025550.1 MGP_C3HHeJ_G0017131.1 mouse_genomes_project 10 75501402 75527068 - MGP_C3HHeJ_P0025550 Smarcb1 protein_coding protein_coding MGP_C3HHeJ_T0025551.1 MGP_C3HHeJ_G0017131.1 mouse_genomes_project 10 75502153 75527043 - MGP_C3HHeJ_P0025551 Smarcb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025552.1 MGP_C3HHeJ_G0017131.1 mouse_genomes_project 10 75514530 75520631 - MGP_C3HHeJ_P0025552 Smarcb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024448.1 MGP_C3HHeJ_G0016806.1 mouse_genomes_project 10 17256523 17274700 + MGP_C3HHeJ_P0024448 Ifngr1 protein_coding protein_coding MGP_C3HHeJ_T0024449.1 MGP_C3HHeJ_G0016806.1 mouse_genomes_project 10 17256532 17262425 + Ifngr1 protein_coding retained_intron MGP_C3HHeJ_T0024450.1 MGP_C3HHeJ_G0016806.1 mouse_genomes_project 10 17256605 17268228 + MGP_C3HHeJ_P0024450 Ifngr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024451.1 MGP_C3HHeJ_G0016806.1 mouse_genomes_project 10 17256627 17265978 + MGP_C3HHeJ_P0024451 Ifngr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024452.1 MGP_C3HHeJ_G0016806.1 mouse_genomes_project 10 17256636 17268248 + MGP_C3HHeJ_P0024452 Ifngr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024453.1 MGP_C3HHeJ_G0016806.1 mouse_genomes_project 10 17270392 17273726 + Ifngr1 protein_coding retained_intron MGP_C3HHeJ_T0025391.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 69987824 70028697 - MGP_C3HHeJ_P0025391 Phyhipl protein_coding protein_coding MGP_C3HHeJ_T0025392.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 69988816 70086295 - MGP_C3HHeJ_P0025392 Phyhipl protein_coding protein_coding MGP_C3HHeJ_T0025393.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 69992979 70028672 - Phyhipl protein_coding retained_intron MGP_C3HHeJ_T0025394.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 69996935 70028880 - Phyhipl protein_coding retained_intron MGP_C3HHeJ_T0025395.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 70000035 70086302 - MGP_C3HHeJ_P0025395 Phyhipl protein_coding protein_coding MGP_C3HHeJ_T0025396.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 70030638 70082265 - Phyhipl protein_coding processed_transcript MGP_C3HHeJ_T0025397.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 70030722 70086300 - Phyhipl protein_coding processed_transcript MGP_C3HHeJ_T0025398.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 70036676 70037151 - Phyhipl protein_coding processed_transcript MGP_C3HHeJ_T0025399.1 MGP_C3HHeJ_G0017100.1 mouse_genomes_project 10 70037186 70055995 - Phyhipl protein_coding processed_transcript MGP_C3HHeJ_T0025731.1 MGP_C3HHeJ_G0017181.1 mouse_genomes_project 10 78009876 78024114 - MGP_C3HHeJ_P0025731 Pwp2 protein_coding protein_coding MGP_C3HHeJ_T0026071.1 MGP_C3HHeJ_G0017276.1 mouse_genomes_project 10 80689198 80699748 - MGP_C3HHeJ_P0026071 Mknk2 protein_coding protein_coding MGP_C3HHeJ_T0026072.1 MGP_C3HHeJ_G0017276.1 mouse_genomes_project 10 80693803 80696165 - MGP_C3HHeJ_P0026072 Mknk2 protein_coding protein_coding MGP_C3HHeJ_T0026073.1 MGP_C3HHeJ_G0017276.1 mouse_genomes_project 10 80695483 80696125 - MGP_C3HHeJ_P0026073 Mknk2 protein_coding protein_coding MGP_C3HHeJ_T0026074.1 MGP_C3HHeJ_G0017276.1 mouse_genomes_project 10 80695819 80701986 - MGP_C3HHeJ_P0026074 Mknk2 protein_coding protein_coding MGP_C3HHeJ_T0099949.1 MGP_C3HHeJ_G0038143.1 mouse_genomes_project 10 58680539 58680671 - Gm23803 snoRNA snoRNA MGP_C3HHeJ_T0026064.1 MGP_C3HHeJ_G0017274.1 mouse_genomes_project 10 80639973 80658587 + MGP_C3HHeJ_P0026064 Csnk1g2 protein_coding protein_coding MGP_C3HHeJ_T0026065.1 MGP_C3HHeJ_G0017274.1 mouse_genomes_project 10 80647476 80658587 + MGP_C3HHeJ_P0026065 Csnk1g2 protein_coding protein_coding MGP_C3HHeJ_T0025926.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80119065 80126020 - MGP_C3HHeJ_P0025926 Cbarp protein_coding protein_coding MGP_C3HHeJ_T0025927.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80119065 80126020 - MGP_C3HHeJ_P0025927 Cbarp protein_coding protein_coding MGP_C3HHeJ_T0025928.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80119165 80127947 - MGP_C3HHeJ_P0025928 Cbarp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025929.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80119165 80127947 - MGP_C3HHeJ_P0025929 Cbarp protein_coding protein_coding MGP_C3HHeJ_T0025930.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80121150 80123314 - Cbarp protein_coding retained_intron MGP_C3HHeJ_T0025931.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80121706 80124221 - Cbarp protein_coding retained_intron MGP_C3HHeJ_T0025932.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80123750 80127945 - MGP_C3HHeJ_P0025932 Cbarp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025933.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80123790 80127760 - MGP_C3HHeJ_P0025933 Cbarp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025934.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80124148 80126550 - Cbarp protein_coding processed_transcript MGP_C3HHeJ_T0025935.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80125277 80126537 - Cbarp protein_coding processed_transcript MGP_C3HHeJ_T0025936.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80125295 80125985 - Cbarp protein_coding processed_transcript MGP_C3HHeJ_T0025937.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80125340 80126283 - Cbarp protein_coding retained_intron MGP_C3HHeJ_T0025938.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80125506 80126227 - Cbarp protein_coding retained_intron MGP_C3HHeJ_T0025939.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80125979 80127198 - Cbarp protein_coding processed_transcript MGP_C3HHeJ_T0025940.1 MGP_C3HHeJ_G0017246.1 mouse_genomes_project 10 80125979 80129432 - MGP_C3HHeJ_P0025940 Cbarp protein_coding protein_coding MGP_C3HHeJ_T0024362.1 MGP_C3HHeJ_G0016782.1 mouse_genomes_project 10 10599129 10723685 - MGP_C3HHeJ_P0024362 Phactr2 protein_coding protein_coding MGP_C3HHeJ_T0024363.1 MGP_C3HHeJ_G0016782.1 mouse_genomes_project 10 10604768 10790494 - MGP_C3HHeJ_P0024363 Phactr2 protein_coding protein_coding MGP_C3HHeJ_T0024364.1 MGP_C3HHeJ_G0016782.1 mouse_genomes_project 10 10604768 10876842 - MGP_C3HHeJ_P0024364 Phactr2 protein_coding protein_coding MGP_C3HHeJ_T0024365.1 MGP_C3HHeJ_G0016782.1 mouse_genomes_project 10 10604770 10723814 - MGP_C3HHeJ_P0024365 Phactr2 protein_coding protein_coding MGP_C3HHeJ_T0024366.1 MGP_C3HHeJ_G0016782.1 mouse_genomes_project 10 10605631 10790711 - MGP_C3HHeJ_P0024366 Phactr2 protein_coding protein_coding MGP_C3HHeJ_T0024367.1 MGP_C3HHeJ_G0016782.1 mouse_genomes_project 10 10783159 10790472 - Phactr2 protein_coding processed_transcript MGP_C3HHeJ_T0026221.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81465733 81469658 + MGP_C3HHeJ_P0026221 Dohh protein_coding protein_coding MGP_C3HHeJ_T0026222.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81465764 81468757 + MGP_C3HHeJ_P0026222 Dohh protein_coding protein_coding MGP_C3HHeJ_T0026223.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81465771 81472866 + MGP_C3HHeJ_P0026223 Dohh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026224.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81465772 81467407 + Dohh protein_coding retained_intron MGP_C3HHeJ_T0026225.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81466200 81467300 + MGP_C3HHeJ_P0026225 Dohh protein_coding protein_coding MGP_C3HHeJ_T0026226.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81466926 81468987 + MGP_C3HHeJ_P0026226 Dohh protein_coding protein_coding MGP_C3HHeJ_T0026227.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81468622 81472164 + MGP_C3HHeJ_P0026227 Dohh protein_coding protein_coding MGP_C3HHeJ_T0026228.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81470310 81472573 + Dohh protein_coding processed_transcript MGP_C3HHeJ_T0026229.1 MGP_C3HHeJ_G0017320.1 mouse_genomes_project 10 81471634 81472441 + Dohh protein_coding retained_intron MGP_C3HHeJ_T0002997.1 MGP_C3HHeJ_G0002801.1 mouse_genomes_project 10 81491908 81493913 + Gm16104 antisense antisense MGP_C3HHeJ_T0025093.1 MGP_C3HHeJ_G0017031.1 mouse_genomes_project 10 59304148 59307967 + MGP_C3HHeJ_P0025093 Gm17455 protein_coding protein_coding MGP_C3HHeJ_T0025144.1 MGP_C3HHeJ_G0017049.1 mouse_genomes_project 10 60717885 60765693 - MGP_C3HHeJ_P0025144 H2afy2 protein_coding protein_coding MGP_C3HHeJ_T0027244.1 MGP_C3HHeJ_G0017624.1 mouse_genomes_project 10 130690485 130698752 + Ankrd52 protein_coding retained_intron MGP_C3HHeJ_T0027245.1 MGP_C3HHeJ_G0017624.1 mouse_genomes_project 10 130690489 130707260 + MGP_C3HHeJ_P0027245 Ankrd52 protein_coding protein_coding MGP_C3HHeJ_T0027246.1 MGP_C3HHeJ_G0017624.1 mouse_genomes_project 10 130702540 130721979 + MGP_C3HHeJ_P0027246 Ankrd52 protein_coding protein_coding MGP_C3HHeJ_T0024190.1 MGP_C3HHeJ_G0016745.1 mouse_genomes_project 10 2648730 2661083 + MGP_C3HHeJ_P0024190 Myct1 protein_coding protein_coding MGP_C3HHeJ_T0002979.1 MGP_C3HHeJ_G0002786.1 mouse_genomes_project 10 70507256 70508032 + Gm15647 antisense antisense MGP_C3HHeJ_T0025730.1 MGP_C3HHeJ_G0017180.1 mouse_genomes_project 10 78001033 78008735 - MGP_C3HHeJ_P0025730 D10Jhu81e protein_coding protein_coding MGP_C3HHeJ_T0026889.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118232723 118331343 - MGP_C3HHeJ_P0026889 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026890.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118232727 118331328 - MGP_C3HHeJ_P0026890 Cnot2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026891.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118232727 118297586 - MGP_C3HHeJ_P0026891 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026892.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118232728 118331332 - MGP_C3HHeJ_P0026892 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026893.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118233349 118331343 - MGP_C3HHeJ_P0026893 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026894.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118233759 118331334 - MGP_C3HHeJ_P0026894 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026895.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118233762 118284116 - MGP_C3HHeJ_P0026895 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026896.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118245648 118331315 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0026897.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118245898 118331325 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0026898.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118246929 118331322 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0026899.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118246934 118331317 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0026900.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118251438 118331297 - MGP_C3HHeJ_P0026900 Cnot2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026901.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118253779 118331323 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0026902.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118257189 118331328 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0026903.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118257189 118331343 - MGP_C3HHeJ_P0026903 Cnot2 protein_coding protein_coding MGP_C3HHeJ_T0026904.1 MGP_C3HHeJ_G0017510.1 mouse_genomes_project 10 118257558 118331315 - Cnot2 protein_coding processed_transcript MGP_C3HHeJ_T0024197.1 MGP_C3HHeJ_G0016749.1 mouse_genomes_project 10 2882645 2993335 - MGP_C3HHeJ_P0024197 Rgs17 protein_coding protein_coding MGP_C3HHeJ_T0024198.1 MGP_C3HHeJ_G0016749.1 mouse_genomes_project 10 2882645 2993321 - MGP_C3HHeJ_P0024198 Rgs17 protein_coding protein_coding MGP_C3HHeJ_T0024199.1 MGP_C3HHeJ_G0016749.1 mouse_genomes_project 10 2889155 2993301 - MGP_C3HHeJ_P0024199 Rgs17 protein_coding protein_coding MGP_C3HHeJ_T0024200.1 MGP_C3HHeJ_G0016749.1 mouse_genomes_project 10 2890080 2993301 - MGP_C3HHeJ_P0024200 Rgs17 protein_coding protein_coding MGP_C3HHeJ_T0006022.1 MGP_C3HHeJ_G0005033.1 mouse_genomes_project 10 59964605 59971380 + Gm20611 lincRNA lincRNA MGP_C3HHeJ_T0025747.1 MGP_C3HHeJ_G0017187.1 mouse_genomes_project 10 78338922 78342195 - MGP_C3HHeJ_P0025747 Gm9978 protein_coding protein_coding MGP_C3HHeJ_T0000789.1 MGP_C3HHeJ_G0000731.1 mouse_genomes_project 10 72675473 72675866 - TEC TEC MGP_C3HHeJ_T0026879.1 MGP_C3HHeJ_G0017507.1 mouse_genomes_project 10 117830432 117832686 - MGP_C3HHeJ_P0026879 4933416C03Rik protein_coding protein_coding MGP_C3HHeJ_T0025868.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79870415 79885251 - MGP_C3HHeJ_P0025868 Med16 protein_coding protein_coding MGP_C3HHeJ_T0025869.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79870618 79885228 - MGP_C3HHeJ_P0025869 Med16 protein_coding protein_coding MGP_C3HHeJ_T0025870.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79874730 79876180 - Med16 protein_coding retained_intron MGP_C3HHeJ_T0025871.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79878332 79885148 - Med16 protein_coding retained_intron MGP_C3HHeJ_T0025872.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79879673 79885240 - MGP_C3HHeJ_P0025872 Med16 protein_coding protein_coding MGP_C3HHeJ_T0025873.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79879849 79884651 - MGP_C3HHeJ_P0025873 Med16 protein_coding protein_coding MGP_C3HHeJ_T0025874.1 MGP_C3HHeJ_G0017231.1 mouse_genomes_project 10 79879876 79885253 - MGP_C3HHeJ_P0025874 Med16 protein_coding protein_coding MGP_C3HHeJ_T0025744.1 MGP_C3HHeJ_G0017184.1 mouse_genomes_project 10 78252480 78265127 - MGP_C3HHeJ_P0025744 Rrp1 protein_coding protein_coding MGP_C3HHeJ_T0026885.1 MGP_C3HHeJ_G0017508.1 mouse_genomes_project 10 118031440 118125112 + MGP_C3HHeJ_P0026885 Ptprb protein_coding protein_coding MGP_C3HHeJ_T0026085.1 MGP_C3HHeJ_G0017281.1 mouse_genomes_project 10 80827259 80829786 - MGP_C3HHeJ_P0026085 Plekhj1 protein_coding protein_coding MGP_C3HHeJ_T0027295.1 MGP_C3HHeJ_G0017641.1 mouse_genomes_project 10 131043255 131057949 + MGP_C3HHeJ_P0027295 Pmel protein_coding protein_coding MGP_C3HHeJ_T0024244.1 MGP_C3HHeJ_G0016754.1 mouse_genomes_project 10 4694515 4709540 - MGP_C3HHeJ_P0024244 protein_coding protein_coding MGP_C3HHeJ_T0025069.1 MGP_C3HHeJ_G0017028.1 mouse_genomes_project 10 59180672 59205592 + MGP_C3HHeJ_P0025069 Psap protein_coding protein_coding MGP_C3HHeJ_T0025070.1 MGP_C3HHeJ_G0017028.1 mouse_genomes_project 10 59180673 59205595 + MGP_C3HHeJ_P0025070 Psap protein_coding protein_coding MGP_C3HHeJ_T0025071.1 MGP_C3HHeJ_G0017028.1 mouse_genomes_project 10 59180673 59205595 + MGP_C3HHeJ_P0025071 Psap protein_coding protein_coding MGP_C3HHeJ_T0025072.1 MGP_C3HHeJ_G0017028.1 mouse_genomes_project 10 59180673 59205595 + MGP_C3HHeJ_P0025072 Psap protein_coding protein_coding MGP_C3HHeJ_T0025073.1 MGP_C3HHeJ_G0017028.1 mouse_genomes_project 10 59187510 59205595 + MGP_C3HHeJ_P0025073 Psap protein_coding protein_coding MGP_C3HHeJ_T0011174.1 MGP_C3HHeJ_G0009307.1 mouse_genomes_project 10 39274544 39274787 - Gm22948 misc_RNA misc_RNA MGP_C3HHeJ_T0027380.1 MGP_C3HHeJ_G0017692.1 mouse_genomes_project 10 132338157 132340186 - MGP_C3HHeJ_P0027380 Olfr816 protein_coding protein_coding MGP_C3HHeJ_T0098692.1 MGP_C3HHeJ_G0036886.1 mouse_genomes_project 10 10163348 10163448 - Gm23044 snRNA snRNA MGP_C3HHeJ_T0027080.1 MGP_C3HHeJ_G0017572.1 mouse_genomes_project 10 129373920 129381770 - MGP_C3HHeJ_P0027080 Slc26a10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027081.1 MGP_C3HHeJ_G0017572.1 mouse_genomes_project 10 129373921 129382126 - MGP_C3HHeJ_P0027081 Slc26a10 protein_coding protein_coding MGP_C3HHeJ_T0024329.1 MGP_C3HHeJ_G0016776.1 mouse_genomes_project 10 9740927 9904505 - MGP_C3HHeJ_P0024329 Utrn protein_coding unknown_likely_coding MGP_C3HHeJ_T0024330.1 MGP_C3HHeJ_G0016776.1 mouse_genomes_project 10 9740929 10238270 - MGP_C3HHeJ_P0024330 Utrn protein_coding protein_coding MGP_C3HHeJ_T0024331.1 MGP_C3HHeJ_G0016776.1 mouse_genomes_project 10 9980980 10244886 - MGP_C3HHeJ_P0024331 Utrn protein_coding unknown_likely_coding MGP_C3HHeJ_T0024685.1 MGP_C3HHeJ_G0016902.1 mouse_genomes_project 10 32656465 32787620 + MGP_C3HHeJ_P0024685 Frk protein_coding protein_coding MGP_C3HHeJ_T0024686.1 MGP_C3HHeJ_G0016902.1 mouse_genomes_project 10 32656465 32787620 + MGP_C3HHeJ_P0024686 Frk protein_coding protein_coding MGP_C3HHeJ_T0009517.1 MGP_C3HHeJ_G0007650.1 mouse_genomes_project 10 80625473 80625543 + Mir6912 miRNA miRNA MGP_C3HHeJ_T0098729.1 MGP_C3HHeJ_G0036923.1 mouse_genomes_project 10 87838585 87838692 - Gm23191 snRNA snRNA MGP_C3HHeJ_T0003039.1 MGP_C3HHeJ_G0002831.1 mouse_genomes_project 10 129918224 129923337 - Gm16230 antisense antisense MGP_C3HHeJ_T0003032.1 MGP_C3HHeJ_G0002825.1 mouse_genomes_project 10 121804435 121833199 - Grip1os1 antisense antisense MGP_C3HHeJ_T0003033.1 MGP_C3HHeJ_G0002825.1 mouse_genomes_project 10 121827983 121833086 - Grip1os1 antisense antisense MGP_C3HHeJ_T0026342.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83003613 83019062 - MGP_C3HHeJ_P0026342 Nfyb protein_coding protein_coding MGP_C3HHeJ_T0026343.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83004205 83019019 - Nfyb protein_coding retained_intron MGP_C3HHeJ_T0026344.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83005394 83006578 - Nfyb protein_coding retained_intron MGP_C3HHeJ_T0026345.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83006084 83007467 - Nfyb protein_coding retained_intron MGP_C3HHeJ_T0026346.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83007332 83018576 - Nfyb protein_coding processed_transcript MGP_C3HHeJ_T0026347.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83007434 83018559 - MGP_C3HHeJ_P0026347 Nfyb protein_coding protein_coding MGP_C3HHeJ_T0026348.1 MGP_C3HHeJ_G0017345.1 mouse_genomes_project 10 83009982 83012223 - Nfyb protein_coding retained_intron MGP_C3HHeJ_T0098706.1 MGP_C3HHeJ_G0036900.1 mouse_genomes_project 10 43887593 43887656 + Gm27723 snRNA snRNA MGP_C3HHeJ_T0025765.1 MGP_C3HHeJ_G0017199.1 mouse_genomes_project 10 78851368 78855040 + MGP_C3HHeJ_P0025765 Olfr1352 protein_coding protein_coding MGP_C3HHeJ_T0025766.1 MGP_C3HHeJ_G0017199.1 mouse_genomes_project 10 78851433 78854577 + MGP_C3HHeJ_P0025766 Olfr1352 protein_coding protein_coding MGP_C3HHeJ_T0026123.1 MGP_C3HHeJ_G0017296.1 mouse_genomes_project 10 81084341 81100416 - MGP_C3HHeJ_P0026123 Sgta protein_coding unknown_likely_coding MGP_C3HHeJ_T0026124.1 MGP_C3HHeJ_G0017296.1 mouse_genomes_project 10 81084347 81100451 - MGP_C3HHeJ_P0026124 Sgta protein_coding protein_coding MGP_C3HHeJ_T0025732.1 MGP_C3HHeJ_G0017182.1 mouse_genomes_project 10 78026291 78084257 - MGP_C3HHeJ_P0025732 Trappc10 protein_coding protein_coding MGP_C3HHeJ_T0025826.1 MGP_C3HHeJ_G0017223.1 mouse_genomes_project 10 79751311 79759095 - MGP_C3HHeJ_P0025826 Prss57 protein_coding protein_coding MGP_C3HHeJ_T0025827.1 MGP_C3HHeJ_G0017223.1 mouse_genomes_project 10 79751313 79761071 - MGP_C3HHeJ_P0025827 Prss57 protein_coding protein_coding MGP_C3HHeJ_T0025828.1 MGP_C3HHeJ_G0017223.1 mouse_genomes_project 10 79752755 79754393 - MGP_C3HHeJ_P0025828 Prss57 protein_coding protein_coding MGP_C3HHeJ_T0025829.1 MGP_C3HHeJ_G0017223.1 mouse_genomes_project 10 79752933 79754411 - MGP_C3HHeJ_P0025829 Prss57 protein_coding protein_coding MGP_C3HHeJ_T0027348.1 MGP_C3HHeJ_G0017671.1 mouse_genomes_project 10 131854149 131855085 + MGP_C3HHeJ_P0027348 Olfr788 protein_coding protein_coding MGP_C3HHeJ_T0098743.1 MGP_C3HHeJ_G0036937.1 mouse_genomes_project 10 112292418 112292524 - Gm22236 snRNA snRNA MGP_C3HHeJ_T0000784.1 MGP_C3HHeJ_G0000726.1 mouse_genomes_project 10 19802424 19816352 - TEC TEC MGP_C3HHeJ_T0026710.1 MGP_C3HHeJ_G0017440.1 mouse_genomes_project 10 97505689 97510457 + MGP_C3HHeJ_P0026710 Btg1 protein_coding protein_coding MGP_C3HHeJ_T0024892.1 MGP_C3HHeJ_G0016965.1 mouse_genomes_project 10 42874857 42972753 + MGP_C3HHeJ_P0024892 Atg5 protein_coding protein_coding MGP_C3HHeJ_T0026794.1 MGP_C3HHeJ_G0017472.1 mouse_genomes_project 10 108163585 108366858 - MGP_C3HHeJ_P0026794 Acss3 protein_coding protein_coding MGP_C3HHeJ_T0026795.1 MGP_C3HHeJ_G0017472.1 mouse_genomes_project 10 108198117 108366858 - MGP_C3HHeJ_P0026795 Acss3 protein_coding protein_coding MGP_C3HHeJ_T0026796.1 MGP_C3HHeJ_G0017472.1 mouse_genomes_project 10 108349306 108366839 - Acss3 protein_coding processed_transcript MGP_C3HHeJ_T0024770.1 MGP_C3HHeJ_G0016931.1 mouse_genomes_project 10 39719700 39764536 + MGP_C3HHeJ_P0024770 Ak9 protein_coding protein_coding MGP_C3HHeJ_T0024771.1 MGP_C3HHeJ_G0016931.1 mouse_genomes_project 10 39726848 39866412 + MGP_C3HHeJ_P0024771 Ak9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024772.1 MGP_C3HHeJ_G0016931.1 mouse_genomes_project 10 39767939 39867658 + MGP_C3HHeJ_P0024772 Ak9 protein_coding protein_coding MGP_C3HHeJ_T0026448.1 MGP_C3HHeJ_G0017380.1 mouse_genomes_project 10 87243934 87297345 + MGP_C3HHeJ_P0026448 Nt5dc3 protein_coding protein_coding MGP_C3HHeJ_T0027283.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130960978 130976101 - MGP_C3HHeJ_P0027283 Ikzf4 protein_coding protein_coding MGP_C3HHeJ_T0027284.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130962540 130975936 - MGP_C3HHeJ_P0027284 Ikzf4 protein_coding protein_coding MGP_C3HHeJ_T0027285.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130962593 130975954 - MGP_C3HHeJ_P0027285 Ikzf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027286.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130963838 130974759 - MGP_C3HHeJ_P0027286 Ikzf4 protein_coding protein_coding MGP_C3HHeJ_T0027287.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130970364 130975906 - MGP_C3HHeJ_P0027287 Ikzf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027288.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130971280 130975900 - MGP_C3HHeJ_P0027288 Ikzf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027289.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130971306 130975917 - MGP_C3HHeJ_P0027289 Ikzf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027290.1 MGP_C3HHeJ_G0017637.1 mouse_genomes_project 10 130974548 130975936 - Ikzf4 protein_coding processed_transcript MGP_C3HHeJ_T0026364.1 MGP_C3HHeJ_G0017352.1 mouse_genomes_project 10 83852199 83906238 + MGP_C3HHeJ_P0026364 A230046K03Rik protein_coding protein_coding MGP_C3HHeJ_T0027281.1 MGP_C3HHeJ_G0017635.1 mouse_genomes_project 10 130887567 130909661 - MGP_C3HHeJ_P0027281 Erbb3 protein_coding protein_coding MGP_C3HHeJ_T0024696.1 MGP_C3HHeJ_G0016905.1 mouse_genomes_project 10 35401068 35406628 - MGP_C3HHeJ_P0024696 Marcks protein_coding protein_coding MGP_C3HHeJ_T0026905.1 MGP_C3HHeJ_G0017511.1 mouse_genomes_project 10 118534683 118658088 - MGP_C3HHeJ_P0026905 Myrfl protein_coding protein_coding MGP_C3HHeJ_T0024574.1 MGP_C3HHeJ_G0016856.1 mouse_genomes_project 10 22821471 22833279 - MGP_C3HHeJ_P0024574 Arg1 protein_coding protein_coding MGP_C3HHeJ_T0026297.1 MGP_C3HHeJ_G0017332.1 mouse_genomes_project 10 81715166 81720907 - MGP_C3HHeJ_P0026297 Sirt6 protein_coding protein_coding MGP_C3HHeJ_T0026298.1 MGP_C3HHeJ_G0017332.1 mouse_genomes_project 10 81718896 81720936 - Sirt6 protein_coding retained_intron MGP_C3HHeJ_T0098693.1 MGP_C3HHeJ_G0036887.1 mouse_genomes_project 10 11318439 11318546 - Gm22995 snRNA snRNA MGP_C3HHeJ_T0009530.1 MGP_C3HHeJ_G0007663.1 mouse_genomes_project 10 93297546 93297640 + Gm22582 miRNA miRNA MGP_C3HHeJ_T0097840.1 MGP_C3HHeJ_G0036052.1 mouse_genomes_project 10 75167883 75168395 - pseudogene pseudogene MGP_C3HHeJ_T0026158.1 MGP_C3HHeJ_G0017306.1 mouse_genomes_project 10 81269548 81299930 - MGP_C3HHeJ_P0026158 Atcay protein_coding protein_coding MGP_C3HHeJ_T0026159.1 MGP_C3HHeJ_G0017306.1 mouse_genomes_project 10 81269548 81299882 - MGP_C3HHeJ_P0026159 Atcay protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026160.1 MGP_C3HHeJ_G0017306.1 mouse_genomes_project 10 81276925 81280388 - Atcay protein_coding retained_intron MGP_C3HHeJ_T0005995.1 MGP_C3HHeJ_G0005011.1 mouse_genomes_project 10 6771428 6775682 - Gm28904 lincRNA lincRNA MGP_C3HHeJ_T0025024.1 MGP_C3HHeJ_G0017017.1 mouse_genomes_project 10 58248172 58266642 + MGP_C3HHeJ_P0025024 Pla2g12b protein_coding protein_coding MGP_C3HHeJ_T0025025.1 MGP_C3HHeJ_G0017017.1 mouse_genomes_project 10 58255561 58266636 + MGP_C3HHeJ_P0025025 Pla2g12b protein_coding protein_coding MGP_C3HHeJ_T0026396.1 MGP_C3HHeJ_G0017362.1 mouse_genomes_project 10 85477192 85493591 + MGP_C3HHeJ_P0026396 Tmem263 protein_coding protein_coding MGP_C3HHeJ_T0027057.1 MGP_C3HHeJ_G0017564.1 mouse_genomes_project 10 129230369 129232143 + MGP_C3HHeJ_P0027057 Mettl1 protein_coding protein_coding MGP_C3HHeJ_T0027058.1 MGP_C3HHeJ_G0017564.1 mouse_genomes_project 10 129230912 129232977 + Mettl1 protein_coding retained_intron MGP_C3HHeJ_T0027059.1 MGP_C3HHeJ_G0017564.1 mouse_genomes_project 10 129230913 129236440 + MGP_C3HHeJ_P0027059 Mettl1 protein_coding protein_coding MGP_C3HHeJ_T0027060.1 MGP_C3HHeJ_G0017564.1 mouse_genomes_project 10 129230934 129238347 + MGP_C3HHeJ_P0027060 Mettl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027061.1 MGP_C3HHeJ_G0017564.1 mouse_genomes_project 10 129230938 129236732 + MGP_C3HHeJ_P0027061 Mettl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003016.1 MGP_C3HHeJ_G0002816.1 mouse_genomes_project 10 100150110 100155447 - Gm16239 antisense antisense MGP_C3HHeJ_T0006091.1 MGP_C3HHeJ_G0005077.1 mouse_genomes_project 10 130975993 130979694 + Gm26876 lincRNA lincRNA MGP_C3HHeJ_T0024679.1 MGP_C3HHeJ_G0016900.1 mouse_genomes_project 10 32464893 32468772 + MGP_C3HHeJ_P0024679 Tspyl4 protein_coding protein_coding MGP_C3HHeJ_T0024784.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39910882 39915571 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0024787.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39912412 39915362 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0024788.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39912412 39915581 - MGP_C3HHeJ_P0024788 Smpd2 protein_coding protein_coding MGP_C3HHeJ_T0024789.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39912418 39915571 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0024790.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39912789 39913486 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0024791.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39912879 39915338 - MGP_C3HHeJ_P0024791 Smpd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024792.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39913271 39914920 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0024793.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39913599 39915579 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0024794.1 MGP_C3HHeJ_G0016934.1 mouse_genomes_project 10 39914257 39915610 - Smpd2 protein_coding retained_intron MGP_C3HHeJ_T0025595.1 MGP_C3HHeJ_G0017147.1 mouse_genomes_project 10 76233181 76241725 + MGP_C3HHeJ_P0025595 Spatc1l protein_coding protein_coding MGP_C3HHeJ_T0025596.1 MGP_C3HHeJ_G0017147.1 mouse_genomes_project 10 76233218 76241554 + MGP_C3HHeJ_P0025596 Spatc1l protein_coding protein_coding MGP_C3HHeJ_T0026748.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101589727 101602481 + MGP_C3HHeJ_P0026748 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026749.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591565 101617273 + MGP_C3HHeJ_P0026749 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026750.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591585 101617359 + MGP_C3HHeJ_P0026750 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026751.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591591 101611667 + MGP_C3HHeJ_P0026751 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026752.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591596 101617353 + MGP_C3HHeJ_P0026752 1700017N19Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026753.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591600 101617353 + MGP_C3HHeJ_P0026753 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026754.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591611 101617275 + MGP_C3HHeJ_P0026754 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026755.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101591623 101617363 + MGP_C3HHeJ_P0026755 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026756.1 MGP_C3HHeJ_G0017461.1 mouse_genomes_project 10 101608303 101617270 + MGP_C3HHeJ_P0026756 1700017N19Rik protein_coding protein_coding MGP_C3HHeJ_T0026941.1 MGP_C3HHeJ_G0017527.1 mouse_genomes_project 10 119604559 119651011 - MGP_C3HHeJ_P0026941 Nup107 protein_coding protein_coding MGP_C3HHeJ_T0026942.1 MGP_C3HHeJ_G0017527.1 mouse_genomes_project 10 119604578 119651018 - MGP_C3HHeJ_P0026942 Nup107 protein_coding protein_coding MGP_C3HHeJ_T0101624.1 MGP_C3HHeJ_G0039590.1 mouse_genomes_project 10 132352851 132354203 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024484.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18082971 18421322 - MGP_C3HHeJ_P0024484 Pde7b protein_coding protein_coding MGP_C3HHeJ_T0024485.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18083895 18239832 - MGP_C3HHeJ_P0024485 Pde7b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024486.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18085385 18420940 - MGP_C3HHeJ_P0024486 Pde7b protein_coding protein_coding MGP_C3HHeJ_T0024487.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18085385 18239832 - MGP_C3HHeJ_P0024487 Pde7b protein_coding protein_coding MGP_C3HHeJ_T0024488.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18092786 18239974 - MGP_C3HHeJ_P0024488 Pde7b protein_coding protein_coding MGP_C3HHeJ_T0024489.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18169384 18421276 - Pde7b protein_coding retained_intron MGP_C3HHeJ_T0024490.1 MGP_C3HHeJ_G0016817.1 mouse_genomes_project 10 18309690 18421276 - Pde7b protein_coding retained_intron MGP_C3HHeJ_T0026660.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94682099 94716716 - MGP_C3HHeJ_P0026660 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026661.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94703768 94780954 - MGP_C3HHeJ_P0026661 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026662.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94710351 94780885 - MGP_C3HHeJ_P0026662 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026663.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94713525 94780842 - MGP_C3HHeJ_P0026663 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026664.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94713982 94780879 - MGP_C3HHeJ_P0026664 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026665.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94715771 94780842 - MGP_C3HHeJ_P0026665 Vezt protein_coding unknown_likely_coding MGP_C3HHeJ_T0026666.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94726517 94738888 - MGP_C3HHeJ_P0026666 Vezt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026667.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94729274 94780914 - MGP_C3HHeJ_P0026667 Vezt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026668.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94735428 94780938 - MGP_C3HHeJ_P0026668 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026669.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94738824 94764928 - MGP_C3HHeJ_P0026669 Vezt protein_coding protein_coding MGP_C3HHeJ_T0026670.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94743685 94780886 - Vezt protein_coding retained_intron MGP_C3HHeJ_T0026671.1 MGP_C3HHeJ_G0017424.1 mouse_genomes_project 10 94745857 94780804 - Vezt protein_coding processed_transcript MGP_C3HHeJ_T0026473.1 MGP_C3HHeJ_G0017387.1 mouse_genomes_project 10 88588439 88637060 - MGP_C3HHeJ_P0026473 Parpbp protein_coding protein_coding MGP_C3HHeJ_T0026474.1 MGP_C3HHeJ_G0017387.1 mouse_genomes_project 10 88615853 88636997 - MGP_C3HHeJ_P0026474 Parpbp protein_coding protein_coding MGP_C3HHeJ_T0026475.1 MGP_C3HHeJ_G0017387.1 mouse_genomes_project 10 88615873 88637052 - MGP_C3HHeJ_P0026475 Parpbp protein_coding protein_coding MGP_C3HHeJ_T0026476.1 MGP_C3HHeJ_G0017387.1 mouse_genomes_project 10 88622063 88636997 - MGP_C3HHeJ_P0026476 Parpbp protein_coding protein_coding MGP_C3HHeJ_T0012322.1 MGP_C3HHeJ_G0010426.1 mouse_genomes_project 10 80997925 80998182 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026678.1 MGP_C3HHeJ_G0017427.1 mouse_genomes_project 10 94950253 94971649 + MGP_C3HHeJ_P0026678 Ndufa12 protein_coding protein_coding MGP_C3HHeJ_T0026679.1 MGP_C3HHeJ_G0017427.1 mouse_genomes_project 10 94950257 94954731 + Ndufa12 protein_coding retained_intron MGP_C3HHeJ_T0026680.1 MGP_C3HHeJ_G0017427.1 mouse_genomes_project 10 94951264 94971571 + MGP_C3HHeJ_P0026680 Ndufa12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024855.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41394979 41505807 + MGP_C3HHeJ_P0024855 Scml4 protein_coding protein_coding MGP_C3HHeJ_T0024856.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41395152 41465492 + MGP_C3HHeJ_P0024856 Scml4 protein_coding protein_coding MGP_C3HHeJ_T0024857.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41395276 41478614 + MGP_C3HHeJ_P0024857 Scml4 protein_coding protein_coding MGP_C3HHeJ_T0024858.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41395402 41505805 + MGP_C3HHeJ_P0024858 Scml4 protein_coding protein_coding MGP_C3HHeJ_T0024859.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41400123 41465357 + MGP_C3HHeJ_P0024859 Scml4 protein_coding protein_coding MGP_C3HHeJ_T0024860.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41437004 41479392 + MGP_C3HHeJ_P0024860 Scml4 protein_coding protein_coding MGP_C3HHeJ_T0024861.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41478590 41503797 + Scml4 protein_coding retained_intron MGP_C3HHeJ_T0024862.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41479168 41492418 + Scml4 protein_coding retained_intron MGP_C3HHeJ_T0024863.1 MGP_C3HHeJ_G0016949.1 mouse_genomes_project 10 41484101 41503748 + Scml4 protein_coding processed_transcript MGP_C3HHeJ_T0002975.1 MGP_C3HHeJ_G0002783.1 mouse_genomes_project 10 62319048 62320134 - 1700120B22Rik antisense antisense MGP_C3HHeJ_T0026028.1 MGP_C3HHeJ_G0017265.1 mouse_genomes_project 10 80403053 80406823 - Uqcr11 protein_coding processed_transcript MGP_C3HHeJ_T0026029.1 MGP_C3HHeJ_G0017265.1 mouse_genomes_project 10 80403053 80406887 - MGP_C3HHeJ_P0026029 Uqcr11 protein_coding protein_coding MGP_C3HHeJ_T0026030.1 MGP_C3HHeJ_G0017265.1 mouse_genomes_project 10 80403054 80406852 - Uqcr11 protein_coding processed_transcript MGP_C3HHeJ_T0025676.1 MGP_C3HHeJ_G0017167.1 mouse_genomes_project 10 77438814 77439485 + MGP_C3HHeJ_P0025676 Krtap12-1 protein_coding protein_coding MGP_C3HHeJ_T0026351.1 MGP_C3HHeJ_G0017348.1 mouse_genomes_project 10 83251690 83474966 + MGP_C3HHeJ_P0026351 Chst11 protein_coding protein_coding MGP_C3HHeJ_T0098700.1 MGP_C3HHeJ_G0036894.1 mouse_genomes_project 10 29246349 29246456 - Gm23790 snRNA snRNA MGP_C3HHeJ_T0098717.1 MGP_C3HHeJ_G0036911.1 mouse_genomes_project 10 63438173 63438281 - Gm23854 snRNA snRNA MGP_C3HHeJ_T0026948.1 MGP_C3HHeJ_G0017530.1 mouse_genomes_project 10 120341067 120345917 + MGP_C3HHeJ_P0026948 Ifng protein_coding protein_coding MGP_C3HHeJ_T0098747.1 MGP_C3HHeJ_G0036941.1 mouse_genomes_project 10 125569284 125569468 + Gm22958 snRNA snRNA MGP_C3HHeJ_T0027350.1 MGP_C3HHeJ_G0017673.1 mouse_genomes_project 10 131885169 131886239 + MGP_C3HHeJ_P0027350 protein_coding protein_coding MGP_C3HHeJ_T0098736.1 MGP_C3HHeJ_G0036930.1 mouse_genomes_project 10 105123030 105123139 + Gm25143 snRNA snRNA MGP_C3HHeJ_T0098342.1 MGP_C3HHeJ_G0036553.1 mouse_genomes_project 10 122840362 122841489 - Gm15961 sense_intronic sense_intronic MGP_C3HHeJ_T0099953.1 MGP_C3HHeJ_G0038147.1 mouse_genomes_project 10 68480350 68480467 + Gm24172 snoRNA snoRNA MGP_C3HHeJ_T0025895.1 MGP_C3HHeJ_G0017240.1 mouse_genomes_project 10 79977302 79996381 + MGP_C3HHeJ_P0025895 Abca7 protein_coding protein_coding MGP_C3HHeJ_T0025896.1 MGP_C3HHeJ_G0017240.1 mouse_genomes_project 10 79978384 79996362 + MGP_C3HHeJ_P0025896 Abca7 protein_coding protein_coding MGP_C3HHeJ_T0025897.1 MGP_C3HHeJ_G0017240.1 mouse_genomes_project 10 79978423 79996377 + MGP_C3HHeJ_P0025897 Abca7 protein_coding protein_coding MGP_C3HHeJ_T0024867.1 MGP_C3HHeJ_G0016952.1 mouse_genomes_project 10 41779140 41967081 + MGP_C3HHeJ_P0024867 Pdss2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024868.1 MGP_C3HHeJ_G0016952.1 mouse_genomes_project 10 41779140 42004493 + MGP_C3HHeJ_P0024868 Pdss2 protein_coding protein_coding MGP_C3HHeJ_T0024869.1 MGP_C3HHeJ_G0016952.1 mouse_genomes_project 10 41779171 41907261 + Pdss2 protein_coding retained_intron MGP_C3HHeJ_T0024870.1 MGP_C3HHeJ_G0016952.1 mouse_genomes_project 10 41779254 42036226 + MGP_C3HHeJ_P0024870 Pdss2 protein_coding protein_coding MGP_C3HHeJ_T0024871.1 MGP_C3HHeJ_G0016952.1 mouse_genomes_project 10 41779390 41906858 + Pdss2 protein_coding retained_intron MGP_C3HHeJ_T0024872.1 MGP_C3HHeJ_G0016952.1 mouse_genomes_project 10 41955391 42004139 + MGP_C3HHeJ_P0024872 Pdss2 protein_coding protein_coding MGP_C3HHeJ_T0024292.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7070012 7219178 - MGP_C3HHeJ_P0024292 Stxbp5 protein_coding protein_coding MGP_C3HHeJ_T0024293.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7074414 7219574 - MGP_C3HHeJ_P0024293 Stxbp5 protein_coding protein_coding MGP_C3HHeJ_T0024294.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7074452 7112531 - Stxbp5 protein_coding processed_transcript MGP_C3HHeJ_T0024295.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7075037 7094731 - Stxbp5 protein_coding retained_intron MGP_C3HHeJ_T0024296.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7075369 7219178 - MGP_C3HHeJ_P0024296 Stxbp5 protein_coding protein_coding MGP_C3HHeJ_T0024297.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7081549 7084971 - Stxbp5 protein_coding retained_intron MGP_C3HHeJ_T0024298.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7081552 7083399 - Stxbp5 protein_coding retained_intron MGP_C3HHeJ_T0024299.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7081659 7092706 - Stxbp5 protein_coding retained_intron MGP_C3HHeJ_T0024300.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7083887 7112691 - MGP_C3HHeJ_P0024300 Stxbp5 protein_coding protein_coding MGP_C3HHeJ_T0024301.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7084053 7092706 - Stxbp5 protein_coding retained_intron MGP_C3HHeJ_T0024302.1 MGP_C3HHeJ_G0016768.1 mouse_genomes_project 10 7103435 7112662 - Stxbp5 protein_coding retained_intron MGP_C3HHeJ_T0024741.1 MGP_C3HHeJ_G0016916.1 mouse_genomes_project 10 38299437 38315624 - MGP_C3HHeJ_P0024741 protein_coding protein_coding MGP_C3HHeJ_T0027172.1 MGP_C3HHeJ_G0017598.1 mouse_genomes_project 10 130010087 130018121 + MGP_C3HHeJ_P0027172 protein_coding protein_coding MGP_C3HHeJ_T0025250.1 MGP_C3HHeJ_G0017072.1 mouse_genomes_project 10 62092185 62120535 + MGP_C3HHeJ_P0025250 Pbld2 protein_coding protein_coding MGP_C3HHeJ_T0025251.1 MGP_C3HHeJ_G0017072.1 mouse_genomes_project 10 62092382 62128797 + MGP_C3HHeJ_P0025251 Pbld2 protein_coding protein_coding MGP_C3HHeJ_T0025252.1 MGP_C3HHeJ_G0017072.1 mouse_genomes_project 10 62106870 62146419 + MGP_C3HHeJ_P0025252 Pbld2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025253.1 MGP_C3HHeJ_G0017072.1 mouse_genomes_project 10 62124352 62128112 + Pbld2 protein_coding retained_intron MGP_C3HHeJ_T0025254.1 MGP_C3HHeJ_G0017072.1 mouse_genomes_project 10 62131565 62149338 + MGP_C3HHeJ_P0025254 Pbld2 protein_coding protein_coding MGP_C3HHeJ_T0025255.1 MGP_C3HHeJ_G0017072.1 mouse_genomes_project 10 62131601 62148910 + MGP_C3HHeJ_P0025255 Pbld2 protein_coding protein_coding MGP_C3HHeJ_T0024839.1 MGP_C3HHeJ_G0016945.1 mouse_genomes_project 10 41010179 41045670 + MGP_C3HHeJ_P0024839 Snx3 protein_coding protein_coding MGP_C3HHeJ_T0024840.1 MGP_C3HHeJ_G0016945.1 mouse_genomes_project 10 41010180 41046253 + MGP_C3HHeJ_P0024840 Snx3 protein_coding protein_coding MGP_C3HHeJ_T0024841.1 MGP_C3HHeJ_G0016945.1 mouse_genomes_project 10 41010439 41046264 + MGP_C3HHeJ_P0024841 Snx3 protein_coding protein_coding MGP_C3HHeJ_T0024891.1 MGP_C3HHeJ_G0016964.1 mouse_genomes_project 10 42808809 42820313 + MGP_C3HHeJ_P0024891 protein_coding protein_coding MGP_C3HHeJ_T0024360.1 MGP_C3HHeJ_G0016780.1 mouse_genomes_project 10 10538313 10566283 - MGP_C3HHeJ_P0024360 Zc2hc1b protein_coding protein_coding MGP_C3HHeJ_T0024424.1 MGP_C3HHeJ_G0016798.1 mouse_genomes_project 10 15863166 15876834 - MGP_C3HHeJ_P0024424 Ccdc28a protein_coding protein_coding MGP_C3HHeJ_T0024425.1 MGP_C3HHeJ_G0016798.1 mouse_genomes_project 10 15863259 15865812 - Ccdc28a protein_coding retained_intron MGP_C3HHeJ_T0024426.1 MGP_C3HHeJ_G0016798.1 mouse_genomes_project 10 15863542 15869102 - MGP_C3HHeJ_P0024426 Ccdc28a protein_coding protein_coding MGP_C3HHeJ_T0024427.1 MGP_C3HHeJ_G0016798.1 mouse_genomes_project 10 15863608 15884241 - MGP_C3HHeJ_P0024427 Ccdc28a protein_coding protein_coding MGP_C3HHeJ_T0024428.1 MGP_C3HHeJ_G0016798.1 mouse_genomes_project 10 15866260 15884230 - MGP_C3HHeJ_P0024428 Ccdc28a protein_coding protein_coding MGP_C3HHeJ_T0026624.1 MGP_C3HHeJ_G0017414.1 mouse_genomes_project 10 93968065 94030982 - MGP_C3HHeJ_P0026624 Elk3 protein_coding protein_coding MGP_C3HHeJ_T0026625.1 MGP_C3HHeJ_G0017414.1 mouse_genomes_project 10 93969949 94030629 - MGP_C3HHeJ_P0026625 Elk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026626.1 MGP_C3HHeJ_G0017414.1 mouse_genomes_project 10 93969949 94030816 - MGP_C3HHeJ_P0026626 Elk3 protein_coding protein_coding MGP_C3HHeJ_T0026627.1 MGP_C3HHeJ_G0017414.1 mouse_genomes_project 10 94004515 94030982 - Elk3 protein_coding retained_intron MGP_C3HHeJ_T0026398.1 MGP_C3HHeJ_G0017364.1 mouse_genomes_project 10 85507545 85563778 - MGP_C3HHeJ_P0026398 Cry1 protein_coding protein_coding MGP_C3HHeJ_T0025748.1 MGP_C3HHeJ_G0017188.1 mouse_genomes_project 10 78433801 78443542 + MGP_C3HHeJ_P0025748 Ilvbl protein_coding unknown_likely_coding MGP_C3HHeJ_T0098732.1 MGP_C3HHeJ_G0036926.1 mouse_genomes_project 10 91080804 91080899 + Gm22602 snRNA snRNA MGP_C3HHeJ_T0026460.1 MGP_C3HHeJ_G0017384.1 mouse_genomes_project 10 87996164 88061504 + MGP_C3HHeJ_P0026460 Pah protein_coding protein_coding MGP_C3HHeJ_T0026461.1 MGP_C3HHeJ_G0017384.1 mouse_genomes_project 10 87996299 88061402 + MGP_C3HHeJ_P0026461 Pah protein_coding protein_coding MGP_C3HHeJ_T0026462.1 MGP_C3HHeJ_G0017384.1 mouse_genomes_project 10 87996396 88061223 + MGP_C3HHeJ_P0026462 Pah protein_coding protein_coding MGP_C3HHeJ_T0026463.1 MGP_C3HHeJ_G0017384.1 mouse_genomes_project 10 88021123 88047424 + MGP_C3HHeJ_P0026463 Pah protein_coding protein_coding MGP_C3HHeJ_T0026778.1 MGP_C3HHeJ_G0017467.1 mouse_genomes_project 10 104531357 104588811 + MGP_C3HHeJ_P0026778 Slc6a15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099926.1 MGP_C3HHeJ_G0038120.1 mouse_genomes_project 10 11673300 11673411 + Gm24343 snoRNA snoRNA MGP_C3HHeJ_T0025215.1 MGP_C3HHeJ_G0017064.1 mouse_genomes_project 10 61641839 61681621 - MGP_C3HHeJ_P0025215 Ddx50 protein_coding protein_coding MGP_C3HHeJ_T0024624.1 MGP_C3HHeJ_G0016871.1 mouse_genomes_project 10 27217104 27235529 + MGP_C3HHeJ_P0024624 9330159F19Rik protein_coding protein_coding MGP_C3HHeJ_T0024527.1 MGP_C3HHeJ_G0016830.1 mouse_genomes_project 10 20668134 20670982 - MGP_C3HHeJ_P0024527 Tcf21 protein_coding protein_coding MGP_C3HHeJ_T0012294.1 MGP_C3HHeJ_G0010398.1 mouse_genomes_project 10 23745919 23746485 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024410.1 MGP_C3HHeJ_G0016793.1 mouse_genomes_project 10 15403657 15415335 + Txlnb protein_coding retained_intron MGP_C3HHeJ_T0024411.1 MGP_C3HHeJ_G0016793.1 mouse_genomes_project 10 15404753 15452296 + MGP_C3HHeJ_P0024411 Txlnb protein_coding unknown_likely_coding MGP_C3HHeJ_T0099948.1 MGP_C3HHeJ_G0038142.1 mouse_genomes_project 10 58033921 58034048 + Gm23223 snoRNA snoRNA MGP_C3HHeJ_T0026399.1 MGP_C3HHeJ_G0017365.1 mouse_genomes_project 10 85695517 85696368 + MGP_C3HHeJ_P0026399 Gm8394 protein_coding protein_coding MGP_C3HHeJ_T0025486.1 MGP_C3HHeJ_G0017113.1 mouse_genomes_project 10 74765401 74869384 + MGP_C3HHeJ_P0025486 Specc1l protein_coding protein_coding MGP_C3HHeJ_T0025487.1 MGP_C3HHeJ_G0017113.1 mouse_genomes_project 10 74784556 74869384 + MGP_C3HHeJ_P0025487 Specc1l protein_coding protein_coding MGP_C3HHeJ_T0024157.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1410406 1442813 - MGP_C3HHeJ_P0024157 Rmnd1 protein_coding protein_coding MGP_C3HHeJ_T0024158.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1413440 1418456 - MGP_C3HHeJ_P0024158 Rmnd1 protein_coding protein_coding MGP_C3HHeJ_T0024159.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1413878 1423902 - Rmnd1 protein_coding retained_intron MGP_C3HHeJ_T0024160.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1436250 1442769 - Rmnd1 protein_coding retained_intron MGP_C3HHeJ_T0024161.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1437426 1442720 - MGP_C3HHeJ_P0024161 Rmnd1 protein_coding protein_coding MGP_C3HHeJ_T0024162.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1437601 1442759 - MGP_C3HHeJ_P0024162 Rmnd1 protein_coding protein_coding MGP_C3HHeJ_T0024163.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1437679 1442759 - MGP_C3HHeJ_P0024163 Rmnd1 protein_coding protein_coding MGP_C3HHeJ_T0024164.1 MGP_C3HHeJ_G0016739.1 mouse_genomes_project 10 1438960 1442726 - Rmnd1 protein_coding retained_intron MGP_C3HHeJ_T0006010.1 MGP_C3HHeJ_G0005021.1 mouse_genomes_project 10 19558352 19573763 - Platr6 lincRNA lincRNA MGP_C3HHeJ_T0026818.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112119721 112122453 + E2f7 protein_coding processed_transcript MGP_C3HHeJ_T0026819.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112119747 112130779 + MGP_C3HHeJ_P0026819 E2f7 protein_coding protein_coding MGP_C3HHeJ_T0026820.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112119750 112142281 + E2f7 protein_coding retained_intron MGP_C3HHeJ_T0026821.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112119750 112163052 + MGP_C3HHeJ_P0026821 E2f7 protein_coding protein_coding MGP_C3HHeJ_T0026822.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112119795 112161178 + MGP_C3HHeJ_P0026822 E2f7 protein_coding protein_coding MGP_C3HHeJ_T0026823.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112119854 112128719 + MGP_C3HHeJ_P0026823 E2f7 protein_coding protein_coding MGP_C3HHeJ_T0026824.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112128403 112130389 + E2f7 protein_coding processed_transcript MGP_C3HHeJ_T0026825.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112128473 112148794 + MGP_C3HHeJ_P0026825 E2f7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026826.1 MGP_C3HHeJ_G0017482.1 mouse_genomes_project 10 112137997 112139896 + E2f7 protein_coding retained_intron MGP_C3HHeJ_T0026914.1 MGP_C3HHeJ_G0017519.1 mouse_genomes_project 10 119039136 119045554 - MGP_C3HHeJ_P0026914 9530003J23Rik protein_coding protein_coding MGP_C3HHeJ_T0026915.1 MGP_C3HHeJ_G0017519.1 mouse_genomes_project 10 119040660 119045603 - MGP_C3HHeJ_P0026915 9530003J23Rik protein_coding protein_coding MGP_C3HHeJ_T0006047.1 MGP_C3HHeJ_G0005051.1 mouse_genomes_project 10 84895426 84902604 - Platr7 lincRNA lincRNA MGP_C3HHeJ_T0024667.1 MGP_C3HHeJ_G0016890.1 mouse_genomes_project 10 32064024 32097139 - MGP_C3HHeJ_P0024667 Zufsp protein_coding unknown_likely_coding MGP_C3HHeJ_T0024668.1 MGP_C3HHeJ_G0016890.1 mouse_genomes_project 10 32072236 32097108 - MGP_C3HHeJ_P0024668 Zufsp protein_coding protein_coding MGP_C3HHeJ_T0025401.1 MGP_C3HHeJ_G0017102.1 mouse_genomes_project 10 70342815 70583591 - MGP_C3HHeJ_P0025401 Bicc1 protein_coding protein_coding MGP_C3HHeJ_T0025402.1 MGP_C3HHeJ_G0017102.1 mouse_genomes_project 10 70345069 70570747 - MGP_C3HHeJ_P0025402 Bicc1 protein_coding protein_coding MGP_C3HHeJ_T0025403.1 MGP_C3HHeJ_G0017102.1 mouse_genomes_project 10 70345069 70583581 - MGP_C3HHeJ_P0025403 Bicc1 protein_coding protein_coding MGP_C3HHeJ_T0025404.1 MGP_C3HHeJ_G0017102.1 mouse_genomes_project 10 70354029 70368008 - Bicc1 protein_coding retained_intron MGP_C3HHeJ_T0027002.1 MGP_C3HHeJ_G0017544.1 mouse_genomes_project 10 123445630 123477775 + MGP_C3HHeJ_P0027002 Gns protein_coding protein_coding MGP_C3HHeJ_T0025860.1 MGP_C3HHeJ_G0017228.1 mouse_genomes_project 10 79847443 79858042 + Prtn3 protein_coding processed_transcript MGP_C3HHeJ_T0025861.1 MGP_C3HHeJ_G0017228.1 mouse_genomes_project 10 79854614 79858175 + MGP_C3HHeJ_P0025861 Prtn3 protein_coding protein_coding MGP_C3HHeJ_T0025862.1 MGP_C3HHeJ_G0017228.1 mouse_genomes_project 10 79855980 79858175 + Prtn3 protein_coding retained_intron MGP_C3HHeJ_T0025863.1 MGP_C3HHeJ_G0017228.1 mouse_genomes_project 10 79856004 79857390 + Prtn3 protein_coding retained_intron MGP_C3HHeJ_T0025864.1 MGP_C3HHeJ_G0017228.1 mouse_genomes_project 10 79856042 79857845 + MGP_C3HHeJ_P0025864 Prtn3 protein_coding protein_coding MGP_C3HHeJ_T0025865.1 MGP_C3HHeJ_G0017228.1 mouse_genomes_project 10 79856783 79857881 + Prtn3 protein_coding retained_intron MGP_C3HHeJ_T0009487.1 MGP_C3HHeJ_G0007620.1 mouse_genomes_project 10 22968514 22968599 + Gm22566 miRNA miRNA MGP_C3HHeJ_T0024920.1 MGP_C3HHeJ_G0016974.1 mouse_genomes_project 10 49680670 49784240 + MGP_C3HHeJ_P0024920 Sim1 protein_coding protein_coding MGP_C3HHeJ_T0025983.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80253505 80273031 + MGP_C3HHeJ_P0025983 Dazap1 protein_coding protein_coding MGP_C3HHeJ_T0025984.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80257009 80282967 + MGP_C3HHeJ_P0025984 Dazap1 protein_coding protein_coding MGP_C3HHeJ_T0025985.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80257041 80282452 + MGP_C3HHeJ_P0025985 Dazap1 protein_coding protein_coding MGP_C3HHeJ_T0025986.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80257099 80282967 + MGP_C3HHeJ_P0025986 Dazap1 protein_coding protein_coding MGP_C3HHeJ_T0025987.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80257149 80270402 + Dazap1 protein_coding processed_transcript MGP_C3HHeJ_T0025988.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80272448 80277461 + Dazap1 protein_coding retained_intron MGP_C3HHeJ_T0025989.1 MGP_C3HHeJ_G0017255.1 mouse_genomes_project 10 80274892 80276547 + Dazap1 protein_coding retained_intron MGP_C3HHeJ_T0099966.1 MGP_C3HHeJ_G0038160.1 mouse_genomes_project 10 107103184 107103316 - Gm24237 snoRNA snoRNA MGP_C3HHeJ_T0027101.1 MGP_C3HHeJ_G0017579.1 mouse_genomes_project 10 129503335 129508849 + MGP_C3HHeJ_P0027101 Ddit3 protein_coding protein_coding MGP_C3HHeJ_T0027102.1 MGP_C3HHeJ_G0017579.1 mouse_genomes_project 10 129503354 129508626 + MGP_C3HHeJ_P0027102 Ddit3 protein_coding protein_coding MGP_C3HHeJ_T0027103.1 MGP_C3HHeJ_G0017579.1 mouse_genomes_project 10 129503355 129507144 + Ddit3 protein_coding retained_intron MGP_C3HHeJ_T0024697.1 MGP_C3HHeJ_G0016906.1 mouse_genomes_project 10 37121862 37123101 - MGP_C3HHeJ_P0024697 Rfpl4b protein_coding protein_coding MGP_C3HHeJ_T0024911.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47838917 48574511 - MGP_C3HHeJ_P0024911 Grik2 protein_coding protein_coding MGP_C3HHeJ_T0024912.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47839300 47988982 - Grik2 protein_coding retained_intron MGP_C3HHeJ_T0024913.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47839300 48569025 - MGP_C3HHeJ_P0024913 Grik2 protein_coding protein_coding MGP_C3HHeJ_T0024914.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47840184 48569025 - MGP_C3HHeJ_P0024914 Grik2 protein_coding protein_coding MGP_C3HHeJ_T0024915.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47840446 48569175 - MGP_C3HHeJ_P0024915 Grik2 protein_coding protein_coding MGP_C3HHeJ_T0024916.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47840585 47843389 - Grik2 protein_coding retained_intron MGP_C3HHeJ_T0024917.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 47844475 48569025 - MGP_C3HHeJ_P0024917 Grik2 protein_coding protein_coding MGP_C3HHeJ_T0024918.1 MGP_C3HHeJ_G0016972.1 mouse_genomes_project 10 48264260 48574499 - MGP_C3HHeJ_P0024918 Grik2 protein_coding protein_coding MGP_C3HHeJ_T0026238.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81541818 81566900 - MGP_C3HHeJ_P0026238 Celf5 protein_coding protein_coding MGP_C3HHeJ_T0026239.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81541818 81555520 - MGP_C3HHeJ_P0026239 Celf5 protein_coding protein_coding MGP_C3HHeJ_T0026240.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81543489 81557237 - MGP_C3HHeJ_P0026240 Celf5 protein_coding protein_coding MGP_C3HHeJ_T0026241.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81544107 81566875 - MGP_C3HHeJ_P0026241 Celf5 protein_coding protein_coding MGP_C3HHeJ_T0026242.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81549574 81553367 - Celf5 protein_coding retained_intron MGP_C3HHeJ_T0026243.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81550066 81555771 - Celf5 protein_coding retained_intron MGP_C3HHeJ_T0026244.1 MGP_C3HHeJ_G0017323.1 mouse_genomes_project 10 81550318 81566863 - Celf5 protein_coding retained_intron MGP_C3HHeJ_T0027025.1 MGP_C3HHeJ_G0017552.1 mouse_genomes_project 10 124524042 124528997 + MGP_C3HHeJ_P0027025 Avpr1a protein_coding protein_coding MGP_C3HHeJ_T0027065.1 MGP_C3HHeJ_G0017566.1 mouse_genomes_project 10 129245843 129250851 - MGP_C3HHeJ_P0027065 March9 protein_coding protein_coding MGP_C3HHeJ_T0006093.1 MGP_C3HHeJ_G0005079.1 mouse_genomes_project 10 131412553 131436016 - lincRNA lincRNA MGP_C3HHeJ_T0025646.1 MGP_C3HHeJ_G0017159.1 mouse_genomes_project 10 77241325 77277372 + MGP_C3HHeJ_P0025646 Itgb2 protein_coding protein_coding MGP_C3HHeJ_T0025647.1 MGP_C3HHeJ_G0017159.1 mouse_genomes_project 10 77241420 77258927 + MGP_C3HHeJ_P0025647 Itgb2 protein_coding protein_coding MGP_C3HHeJ_T0025648.1 MGP_C3HHeJ_G0017159.1 mouse_genomes_project 10 77241443 77260404 + MGP_C3HHeJ_P0025648 Itgb2 protein_coding protein_coding MGP_C3HHeJ_T0025649.1 MGP_C3HHeJ_G0017159.1 mouse_genomes_project 10 77241447 77277308 + MGP_C3HHeJ_P0025649 Itgb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025650.1 MGP_C3HHeJ_G0017159.1 mouse_genomes_project 10 77241453 77277394 + MGP_C3HHeJ_P0025650 Itgb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003010.1 MGP_C3HHeJ_G0002812.1 mouse_genomes_project 10 88314278 88316264 - Igf1os antisense antisense MGP_C3HHeJ_T0003011.1 MGP_C3HHeJ_G0002812.1 mouse_genomes_project 10 88314290 88351794 - Igf1os antisense antisense MGP_C3HHeJ_T0002984.1 MGP_C3HHeJ_G0002791.1 mouse_genomes_project 10 76050523 76064600 + 1700094J05Rik antisense antisense MGP_C3HHeJ_T0002985.1 MGP_C3HHeJ_G0002791.1 mouse_genomes_project 10 76060102 76060470 + 1700094J05Rik antisense antisense MGP_C3HHeJ_T0027365.1 MGP_C3HHeJ_G0017683.1 mouse_genomes_project 10 132091293 132092238 + MGP_C3HHeJ_P0027365 Olfr804 protein_coding protein_coding MGP_C3HHeJ_T0024976.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56729758 56839365 + MGP_C3HHeJ_P0024976 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024977.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56729828 56841549 + MGP_C3HHeJ_P0024977 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024978.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56729833 56810093 + Pkib protein_coding retained_intron MGP_C3HHeJ_T0024979.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56729871 56753004 + Pkib protein_coding retained_intron MGP_C3HHeJ_T0024980.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56729901 56828566 + MGP_C3HHeJ_P0024980 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024981.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56738749 56816877 + Pkib protein_coding processed_transcript MGP_C3HHeJ_T0024982.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56744257 56836786 + MGP_C3HHeJ_P0024982 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024983.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56744308 56836786 + MGP_C3HHeJ_P0024983 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024984.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56749385 56837503 + MGP_C3HHeJ_P0024984 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024985.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56749398 56836787 + MGP_C3HHeJ_P0024985 Pkib protein_coding protein_coding MGP_C3HHeJ_T0024986.1 MGP_C3HHeJ_G0017000.1 mouse_genomes_project 10 56828396 56836857 + Pkib protein_coding processed_transcript MGP_C3HHeJ_T0026774.1 MGP_C3HHeJ_G0017466.1 mouse_genomes_project 10 104202300 104397408 - MGP_C3HHeJ_P0026774 Lrriq1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026775.1 MGP_C3HHeJ_G0017466.1 mouse_genomes_project 10 104222703 104399577 - MGP_C3HHeJ_P0026775 Lrriq1 protein_coding protein_coding MGP_C3HHeJ_T0026776.1 MGP_C3HHeJ_G0017466.1 mouse_genomes_project 10 104373103 104399577 - MGP_C3HHeJ_P0026776 Lrriq1 protein_coding protein_coding MGP_C3HHeJ_T0026777.1 MGP_C3HHeJ_G0017466.1 mouse_genomes_project 10 104374033 104399548 - MGP_C3HHeJ_P0026777 Lrriq1 protein_coding protein_coding MGP_C3HHeJ_T0026707.1 MGP_C3HHeJ_G0017437.1 mouse_genomes_project 10 96498935 96499396 - MGP_C3HHeJ_P0026707 Anapc15-ps protein_coding protein_coding MGP_C3HHeJ_T0012338.1 MGP_C3HHeJ_G0010442.1 mouse_genomes_project 10 124257151 124259198 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024623.1 MGP_C3HHeJ_G0016870.1 mouse_genomes_project 10 27150683 27206296 + MGP_C3HHeJ_P0024623 Soga3 protein_coding protein_coding MGP_C3HHeJ_T0003041.1 MGP_C3HHeJ_G0002833.1 mouse_genomes_project 10 130837040 130840413 + Gm29585 antisense antisense MGP_C3HHeJ_T0003042.1 MGP_C3HHeJ_G0002833.1 mouse_genomes_project 10 130839347 130840434 + Gm29585 antisense antisense MGP_C3HHeJ_T0003043.1 MGP_C3HHeJ_G0002833.1 mouse_genomes_project 10 130840104 130860976 + Gm29585 antisense antisense MGP_C3HHeJ_T0026447.1 MGP_C3HHeJ_G0017379.1 mouse_genomes_project 10 87196970 87197626 - MGP_C3HHeJ_P0026447 Fabp3-ps1 protein_coding protein_coding MGP_C3HHeJ_T0024769.1 MGP_C3HHeJ_G0016930.1 mouse_genomes_project 10 39600909 39718962 - MGP_C3HHeJ_P0024769 Fig4 protein_coding protein_coding MGP_C3HHeJ_T0099957.1 MGP_C3HHeJ_G0038151.1 mouse_genomes_project 10 77716199 77716253 - Gm22871 snoRNA snoRNA MGP_C3HHeJ_T0098340.1 MGP_C3HHeJ_G0036551.1 mouse_genomes_project 10 94468771 94469492 + sense_intronic sense_intronic MGP_C3HHeJ_T0025749.1 MGP_C3HHeJ_G0017189.1 mouse_genomes_project 10 78443558 78451028 - MGP_C3HHeJ_P0025749 Syde1 protein_coding protein_coding MGP_C3HHeJ_T0002969.1 MGP_C3HHeJ_G0002779.1 mouse_genomes_project 10 61358189 61367775 + Hk1os antisense antisense MGP_C3HHeJ_T0002970.1 MGP_C3HHeJ_G0002779.1 mouse_genomes_project 10 61358540 61368485 + Hk1os antisense antisense MGP_C3HHeJ_T0002971.1 MGP_C3HHeJ_G0002779.1 mouse_genomes_project 10 61358555 61381333 + Hk1os antisense antisense MGP_C3HHeJ_T0026524.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89495273 89820547 - MGP_C3HHeJ_P0026524 Ano4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026525.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89495274 89820347 - MGP_C3HHeJ_P0026525 Ano4 protein_coding protein_coding MGP_C3HHeJ_T0026526.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89495280 89820379 - MGP_C3HHeJ_P0026526 Ano4 protein_coding protein_coding MGP_C3HHeJ_T0026527.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89495281 89820057 - MGP_C3HHeJ_P0026527 Ano4 protein_coding protein_coding MGP_C3HHeJ_T0026528.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89526940 89551545 - MGP_C3HHeJ_P0026528 Ano4 protein_coding protein_coding MGP_C3HHeJ_T0026529.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89546264 89578955 - Ano4 protein_coding processed_transcript MGP_C3HHeJ_T0026530.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89569507 89820311 - Ano4 protein_coding retained_intron MGP_C3HHeJ_T0026531.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89588985 89911910 - MGP_C3HHeJ_P0026531 Ano4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026532.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89620835 89820347 - MGP_C3HHeJ_P0026532 Ano4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026533.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89621387 89819893 - MGP_C3HHeJ_P0026533 Ano4 protein_coding protein_coding MGP_C3HHeJ_T0026534.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89643811 89879484 - MGP_C3HHeJ_P0026534 Ano4 protein_coding protein_coding MGP_C3HHeJ_T0026535.1 MGP_C3HHeJ_G0017399.1 mouse_genomes_project 10 89902491 89912027 - Ano4 protein_coding processed_transcript MGP_C3HHeJ_T0024504.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19611801 19741551 + MGP_C3HHeJ_P0024504 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024505.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19611986 19629593 + Sgk1 protein_coding processed_transcript MGP_C3HHeJ_T0024506.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19667063 19732093 + MGP_C3HHeJ_P0024506 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024507.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19720400 19737551 + MGP_C3HHeJ_P0024507 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024508.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19733913 19737532 + MGP_C3HHeJ_P0024508 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024509.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19733913 19741556 + MGP_C3HHeJ_P0024509 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024510.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19735547 19741549 + MGP_C3HHeJ_P0024510 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024511.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19736340 19737259 + Sgk1 protein_coding retained_intron MGP_C3HHeJ_T0024512.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19736340 19741560 + MGP_C3HHeJ_P0024512 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024513.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19736368 19737999 + Sgk1 protein_coding retained_intron MGP_C3HHeJ_T0024514.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19736567 19739092 + MGP_C3HHeJ_P0024514 Sgk1 protein_coding protein_coding MGP_C3HHeJ_T0024515.1 MGP_C3HHeJ_G0016824.1 mouse_genomes_project 10 19738248 19739898 + Sgk1 protein_coding retained_intron MGP_C3HHeJ_T0099968.1 MGP_C3HHeJ_G0038162.1 mouse_genomes_project 10 108373938 108374023 + Gm24745 snoRNA snoRNA MGP_C3HHeJ_T0002987.1 MGP_C3HHeJ_G0002793.1 mouse_genomes_project 10 76235674 76242056 - Gm15343 antisense antisense MGP_C3HHeJ_T0027038.1 MGP_C3HHeJ_G0017556.1 mouse_genomes_project 10 125400580 125901211 + MGP_C3HHeJ_P0027038 Fam19a2 protein_coding protein_coding MGP_C3HHeJ_T0024893.1 MGP_C3HHeJ_G0016966.1 mouse_genomes_project 10 43050728 43073226 - MGP_C3HHeJ_P0024893 Prdm1 protein_coding protein_coding MGP_C3HHeJ_T0024894.1 MGP_C3HHeJ_G0016966.1 mouse_genomes_project 10 43051751 43071688 - MGP_C3HHeJ_P0024894 Prdm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024895.1 MGP_C3HHeJ_G0016966.1 mouse_genomes_project 10 43051844 43073165 - MGP_C3HHeJ_P0024895 Prdm1 protein_coding protein_coding MGP_C3HHeJ_T0024896.1 MGP_C3HHeJ_G0016966.1 mouse_genomes_project 10 43061211 43145047 - Prdm1 protein_coding processed_transcript MGP_C3HHeJ_T0025979.1 MGP_C3HHeJ_G0017254.1 mouse_genomes_project 10 80250170 80253032 - MGP_C3HHeJ_P0025979 Gamt protein_coding protein_coding MGP_C3HHeJ_T0025980.1 MGP_C3HHeJ_G0017254.1 mouse_genomes_project 10 80250183 80252988 - MGP_C3HHeJ_P0025980 Gamt protein_coding protein_coding MGP_C3HHeJ_T0025981.1 MGP_C3HHeJ_G0017254.1 mouse_genomes_project 10 80250596 80252938 - Gamt protein_coding retained_intron MGP_C3HHeJ_T0025982.1 MGP_C3HHeJ_G0017254.1 mouse_genomes_project 10 80250812 80251309 - Gamt protein_coding retained_intron MGP_C3HHeJ_T0002967.1 MGP_C3HHeJ_G0002777.1 mouse_genomes_project 10 58661845 58662914 - Gm17059 antisense antisense MGP_C3HHeJ_T0024842.1 MGP_C3HHeJ_G0016946.1 mouse_genomes_project 10 41073931 41095866 - MGP_C3HHeJ_P0024842 Nr2e1 protein_coding protein_coding MGP_C3HHeJ_T0024843.1 MGP_C3HHeJ_G0016946.1 mouse_genomes_project 10 41074952 41080506 - MGP_C3HHeJ_P0024843 Nr2e1 protein_coding protein_coding MGP_C3HHeJ_T0024844.1 MGP_C3HHeJ_G0016946.1 mouse_genomes_project 10 41083161 41092023 - MGP_C3HHeJ_P0024844 Nr2e1 protein_coding protein_coding MGP_C3HHeJ_T0000796.1 MGP_C3HHeJ_G0000737.1 mouse_genomes_project 10 99434254 99434618 - TEC TEC MGP_C3HHeJ_T0097979.1 MGP_C3HHeJ_G0036191.1 mouse_genomes_project 10 39832016 39832121 - Gm27783 rRNA rRNA MGP_C3HHeJ_T0026106.1 MGP_C3HHeJ_G0017291.1 mouse_genomes_project 10 80943500 80960384 - MGP_C3HHeJ_P0026106 Lmnb2 protein_coding protein_coding MGP_C3HHeJ_T0026107.1 MGP_C3HHeJ_G0017291.1 mouse_genomes_project 10 80944940 80948555 - MGP_C3HHeJ_P0026107 Lmnb2 protein_coding protein_coding MGP_C3HHeJ_T0026108.1 MGP_C3HHeJ_G0017291.1 mouse_genomes_project 10 80951833 80960017 - Lmnb2 protein_coding processed_transcript MGP_C3HHeJ_T0024889.1 MGP_C3HHeJ_G0016962.1 mouse_genomes_project 10 42808783 42820312 + MGP_C3HHeJ_P0024889 protein_coding protein_coding MGP_C3HHeJ_T0024873.1 MGP_C3HHeJ_G0016953.1 mouse_genomes_project 10 42051110 42088848 + MGP_C3HHeJ_P0024873 Bend3 protein_coding protein_coding MGP_C3HHeJ_T0024768.1 MGP_C3HHeJ_G0016929.1 mouse_genomes_project 10 39482311 39484608 - MGP_C3HHeJ_P0024768 Gpr6 protein_coding protein_coding MGP_C3HHeJ_T0024542.1 MGP_C3HHeJ_G0016840.1 mouse_genomes_project 10 21816520 21817534 + MGP_C3HHeJ_P0024542 Taar5 protein_coding protein_coding MGP_C3HHeJ_T0024683.1 MGP_C3HHeJ_G0016901.1 mouse_genomes_project 10 32560838 32567927 + MGP_C3HHeJ_P0024683 Col10a1 protein_coding protein_coding MGP_C3HHeJ_T0006041.1 MGP_C3HHeJ_G0005046.1 mouse_genomes_project 10 80593457 80595488 + Gm26710 lincRNA lincRNA MGP_C3HHeJ_T0024634.1 MGP_C3HHeJ_G0016874.1 mouse_genomes_project 10 27476144 27567327 - MGP_C3HHeJ_P0024634 Rspo3 protein_coding protein_coding MGP_C3HHeJ_T0024472.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 17996658 18026670 + MGP_C3HHeJ_P0024472 Bclaf1 protein_coding protein_coding MGP_C3HHeJ_T0024473.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 17996661 18024436 + MGP_C3HHeJ_P0024473 Bclaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024474.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 17996673 18026668 + MGP_C3HHeJ_P0024474 Bclaf1 protein_coding protein_coding MGP_C3HHeJ_T0024475.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 17996717 18006781 + Bclaf1 protein_coding retained_intron MGP_C3HHeJ_T0024476.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 17996718 18024432 + MGP_C3HHeJ_P0024476 Bclaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024477.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 17996726 18024433 + MGP_C3HHeJ_P0024477 Bclaf1 protein_coding protein_coding MGP_C3HHeJ_T0024478.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 18007905 18028781 + MGP_C3HHeJ_P0024478 Bclaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024479.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 18010225 18016439 + MGP_C3HHeJ_P0024479 Bclaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024480.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 18013229 18018071 + Bclaf1 protein_coding retained_intron MGP_C3HHeJ_T0024481.1 MGP_C3HHeJ_G0016815.1 mouse_genomes_project 10 18017434 18024376 + Bclaf1 protein_coding retained_intron MGP_C3HHeJ_T0025961.1 MGP_C3HHeJ_G0017251.1 mouse_genomes_project 10 80168485 80179001 + MGP_C3HHeJ_P0025961 Efna2 protein_coding protein_coding MGP_C3HHeJ_T0024394.1 MGP_C3HHeJ_G0016789.1 mouse_genomes_project 10 12110189 12166570 - MGP_C3HHeJ_P0024394 Vta1 protein_coding protein_coding MGP_C3HHeJ_T0024395.1 MGP_C3HHeJ_G0016789.1 mouse_genomes_project 10 12110789 12166510 - MGP_C3HHeJ_P0024395 Vta1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024396.1 MGP_C3HHeJ_G0016789.1 mouse_genomes_project 10 12111097 12127487 - Vta1 protein_coding retained_intron MGP_C3HHeJ_T0024397.1 MGP_C3HHeJ_G0016789.1 mouse_genomes_project 10 12111222 12166469 - MGP_C3HHeJ_P0024397 Vta1 protein_coding protein_coding MGP_C3HHeJ_T0024398.1 MGP_C3HHeJ_G0016789.1 mouse_genomes_project 10 12111273 12144432 - MGP_C3HHeJ_P0024398 Vta1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024399.1 MGP_C3HHeJ_G0016789.1 mouse_genomes_project 10 12145231 12166475 - Vta1 protein_coding processed_transcript MGP_C3HHeJ_T0012320.1 MGP_C3HHeJ_G0010424.1 mouse_genomes_project 10 75551838 75552231 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024750.1 MGP_C3HHeJ_G0016920.1 mouse_genomes_project 10 38591292 38614525 - MGP_C3HHeJ_P0024750 Rpf2 protein_coding protein_coding MGP_C3HHeJ_T0024751.1 MGP_C3HHeJ_G0016920.1 mouse_genomes_project 10 38591473 38614559 - MGP_C3HHeJ_P0024751 Rpf2 protein_coding protein_coding MGP_C3HHeJ_T0024752.1 MGP_C3HHeJ_G0016920.1 mouse_genomes_project 10 38591729 38595845 - Rpf2 protein_coding processed_transcript MGP_C3HHeJ_T0024753.1 MGP_C3HHeJ_G0016920.1 mouse_genomes_project 10 38591859 38614526 - MGP_C3HHeJ_P0024753 Rpf2 protein_coding protein_coding MGP_C3HHeJ_T0024754.1 MGP_C3HHeJ_G0016920.1 mouse_genomes_project 10 38591934 38614550 - MGP_C3HHeJ_P0024754 Rpf2 protein_coding protein_coding MGP_C3HHeJ_T0024755.1 MGP_C3HHeJ_G0016920.1 mouse_genomes_project 10 38593386 38614516 - MGP_C3HHeJ_P0024755 Rpf2 protein_coding protein_coding MGP_C3HHeJ_T0012323.1 MGP_C3HHeJ_G0010427.1 mouse_genomes_project 10 81590912 81591206 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098739.1 MGP_C3HHeJ_G0036933.1 mouse_genomes_project 10 106004187 106004292 - Gm25522 snRNA snRNA MGP_C3HHeJ_T0101622.1 MGP_C3HHeJ_G0039588.1 mouse_genomes_project 10 131970114 131970877 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0026806.1 MGP_C3HHeJ_G0017480.1 mouse_genomes_project 10 109802933 110341947 - MGP_C3HHeJ_P0026806 Syt1 protein_coding protein_coding MGP_C3HHeJ_T0026807.1 MGP_C3HHeJ_G0017480.1 mouse_genomes_project 10 109802935 110341954 - MGP_C3HHeJ_P0026807 Syt1 protein_coding protein_coding MGP_C3HHeJ_T0026808.1 MGP_C3HHeJ_G0017480.1 mouse_genomes_project 10 109938950 109948062 - Syt1 protein_coding retained_intron MGP_C3HHeJ_T0026809.1 MGP_C3HHeJ_G0017480.1 mouse_genomes_project 10 109939006 110340086 - MGP_C3HHeJ_P0026809 Syt1 protein_coding protein_coding MGP_C3HHeJ_T0026810.1 MGP_C3HHeJ_G0017480.1 mouse_genomes_project 10 110216149 110341934 - Syt1 protein_coding retained_intron MGP_C3HHeJ_T0026811.1 MGP_C3HHeJ_G0017480.1 mouse_genomes_project 10 110216366 110340075 - Syt1 protein_coding retained_intron MGP_C3HHeJ_T0025130.1 MGP_C3HHeJ_G0017044.1 mouse_genomes_project 10 60570218 60603277 + MGP_C3HHeJ_P0025130 Npffr1 protein_coding protein_coding MGP_C3HHeJ_T0024194.1 MGP_C3HHeJ_G0016748.1 mouse_genomes_project 10 2867974 2880887 - MGP_C3HHeJ_P0024194 Mtrf1l protein_coding protein_coding MGP_C3HHeJ_T0024195.1 MGP_C3HHeJ_G0016748.1 mouse_genomes_project 10 2869313 2871857 - Mtrf1l protein_coding processed_transcript MGP_C3HHeJ_T0024196.1 MGP_C3HHeJ_G0016748.1 mouse_genomes_project 10 2876193 2880523 - Mtrf1l protein_coding processed_transcript MGP_C3HHeJ_T0012285.1 MGP_C3HHeJ_G0010389.1 mouse_genomes_project 10 11322146 11323154 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011191.1 MGP_C3HHeJ_G0009324.1 mouse_genomes_project 10 96426749 96427074 + Gm23776 misc_RNA misc_RNA MGP_C3HHeJ_T0098721.1 MGP_C3HHeJ_G0036915.1 mouse_genomes_project 10 79670462 79670569 - Gm25794 snRNA snRNA MGP_C3HHeJ_T0026550.1 MGP_C3HHeJ_G0017405.1 mouse_genomes_project 10 90340497 90437590 + MGP_C3HHeJ_P0026550 Uhrf1bp1l protein_coding protein_coding MGP_C3HHeJ_T0027044.1 MGP_C3HHeJ_G0017560.1 mouse_genomes_project 10 129160849 129184268 + MGP_C3HHeJ_P0027044 Ctdsp2 protein_coding protein_coding MGP_C3HHeJ_T0026542.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90226494 90275923 - MGP_C3HHeJ_P0026542 Scyl2 protein_coding protein_coding MGP_C3HHeJ_T0026543.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90227442 90242261 - Scyl2 protein_coding processed_transcript MGP_C3HHeJ_T0026544.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90227725 90275906 - MGP_C3HHeJ_P0026544 Scyl2 protein_coding protein_coding MGP_C3HHeJ_T0026545.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90237541 90241965 - Scyl2 protein_coding retained_intron MGP_C3HHeJ_T0026546.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90238539 90248729 - MGP_C3HHeJ_P0026546 Scyl2 protein_coding protein_coding MGP_C3HHeJ_T0026547.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90256001 90275906 - Scyl2 protein_coding retained_intron MGP_C3HHeJ_T0026548.1 MGP_C3HHeJ_G0017403.1 mouse_genomes_project 10 90264211 90275901 - Scyl2 protein_coding retained_intron MGP_C3HHeJ_T0011188.1 MGP_C3HHeJ_G0009321.1 mouse_genomes_project 10 92820436 92820544 - Gm27366 misc_RNA misc_RNA MGP_C3HHeJ_T0026987.1 MGP_C3HHeJ_G0017537.1 mouse_genomes_project 10 122231544 122236501 + MGP_C3HHeJ_P0026987 protein_coding protein_coding MGP_C3HHeJ_T0026988.1 MGP_C3HHeJ_G0017537.1 mouse_genomes_project 10 122231660 122235781 + MGP_C3HHeJ_P0026988 protein_coding protein_coding MGP_C3HHeJ_T0027174.1 MGP_C3HHeJ_G0017600.1 mouse_genomes_project 10 130047426 130096956 + MGP_C3HHeJ_P0027174 Rdh16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027175.1 MGP_C3HHeJ_G0017600.1 mouse_genomes_project 10 130047427 130067559 + MGP_C3HHeJ_P0027175 Rdh16 protein_coding protein_coding MGP_C3HHeJ_T0024774.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39901554 39912273 + MGP_C3HHeJ_P0024774 Mical1 protein_coding protein_coding MGP_C3HHeJ_T0024775.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39901571 39912276 + MGP_C3HHeJ_P0024775 Mical1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024776.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39901576 39910466 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0024777.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39901608 39912273 + MGP_C3HHeJ_P0024777 Mical1 protein_coding protein_coding MGP_C3HHeJ_T0024778.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39901617 39912273 + MGP_C3HHeJ_P0024778 Mical1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024779.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39902319 39903426 + MGP_C3HHeJ_P0024779 Mical1 protein_coding protein_coding MGP_C3HHeJ_T0024780.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39903718 39906406 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0024781.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39905228 39906399 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0024782.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39906947 39907957 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0024783.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39909314 39910312 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0024785.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39911351 39911961 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0024786.1 MGP_C3HHeJ_G0016933.1 mouse_genomes_project 10 39911612 39912271 + Mical1 protein_coding retained_intron MGP_C3HHeJ_T0026855.1 MGP_C3HHeJ_G0017497.1 mouse_genomes_project 10 116740396 116858272 - MGP_C3HHeJ_P0026855 Tph2 protein_coding protein_coding MGP_C3HHeJ_T0026856.1 MGP_C3HHeJ_G0017497.1 mouse_genomes_project 10 116847294 116848808 - Tph2 protein_coding processed_transcript MGP_C3HHeJ_T0016896.1 MGP_C3HHeJ_G0014896.1 mouse_genomes_project 10 60560115 60585786 - Gm28447 processed_transcript antisense MGP_C3HHeJ_T0016897.1 MGP_C3HHeJ_G0014896.1 mouse_genomes_project 10 60565961 60566938 - Gm28447 processed_transcript retained_intron MGP_C3HHeJ_T0006080.1 MGP_C3HHeJ_G0005069.1 mouse_genomes_project 10 118426694 118431243 + Gm26579 lincRNA lincRNA MGP_C3HHeJ_T0027351.1 MGP_C3HHeJ_G0017674.1 mouse_genomes_project 10 131885242 131886211 + MGP_C3HHeJ_P0027351 protein_coding protein_coding MGP_C3HHeJ_T0025693.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77776897 77784674 + MGP_C3HHeJ_P0025693 1810043G02Rik protein_coding protein_coding MGP_C3HHeJ_T0025694.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77777027 77784495 + 1810043G02Rik protein_coding retained_intron MGP_C3HHeJ_T0025695.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77777044 77784674 + 1810043G02Rik protein_coding retained_intron MGP_C3HHeJ_T0025696.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77777046 77786145 + MGP_C3HHeJ_P0025696 1810043G02Rik protein_coding protein_coding MGP_C3HHeJ_T0025697.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77777054 77784676 + 1810043G02Rik protein_coding retained_intron MGP_C3HHeJ_T0025698.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77777066 77778896 + 1810043G02Rik protein_coding processed_transcript MGP_C3HHeJ_T0025699.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77778866 77783719 + 1810043G02Rik protein_coding processed_transcript MGP_C3HHeJ_T0025700.1 MGP_C3HHeJ_G0017175.1 mouse_genomes_project 10 77781001 77782134 + 1810043G02Rik protein_coding processed_transcript MGP_C3HHeJ_T0027358.1 MGP_C3HHeJ_G0017679.1 mouse_genomes_project 10 132043645 132044581 + MGP_C3HHeJ_P0027358 Olfr800 protein_coding protein_coding MGP_C3HHeJ_T0025756.1 MGP_C3HHeJ_G0017194.1 mouse_genomes_project 10 78710301 78711264 - MGP_C3HHeJ_P0025756 Olfr1356 protein_coding protein_coding MGP_C3HHeJ_T0025757.1 MGP_C3HHeJ_G0017194.1 mouse_genomes_project 10 78710301 78715517 - MGP_C3HHeJ_P0025757 Olfr1356 protein_coding protein_coding MGP_C3HHeJ_T0025867.1 MGP_C3HHeJ_G0017230.1 mouse_genomes_project 10 79866560 79868364 + MGP_C3HHeJ_P0025867 Cfd protein_coding protein_coding MGP_C3HHeJ_T0026077.1 MGP_C3HHeJ_G0017279.1 mouse_genomes_project 10 80731714 80769579 - MGP_C3HHeJ_P0026077 Ap3d1 protein_coding protein_coding MGP_C3HHeJ_T0000797.1 MGP_C3HHeJ_G0000738.1 mouse_genomes_project 10 101802274 101803041 - TEC TEC MGP_C3HHeJ_T0009513.1 MGP_C3HHeJ_G0007646.1 mouse_genomes_project 10 79487750 79487812 - Mir6909 miRNA miRNA MGP_C3HHeJ_T0025701.1 MGP_C3HHeJ_G0017176.1 mouse_genomes_project 10 77786186 77813967 - MGP_C3HHeJ_P0025701 Pfkl protein_coding protein_coding MGP_C3HHeJ_T0025702.1 MGP_C3HHeJ_G0017176.1 mouse_genomes_project 10 77790483 77792197 - Pfkl protein_coding retained_intron MGP_C3HHeJ_T0025703.1 MGP_C3HHeJ_G0017176.1 mouse_genomes_project 10 77801403 77804098 - Pfkl protein_coding retained_intron MGP_C3HHeJ_T0025704.1 MGP_C3HHeJ_G0017176.1 mouse_genomes_project 10 77804843 77814243 - Pfkl protein_coding processed_transcript MGP_C3HHeJ_T0027343.1 MGP_C3HHeJ_G0017667.1 mouse_genomes_project 10 131777005 131777898 + MGP_C3HHeJ_P0027343 Olfr784 protein_coding protein_coding MGP_C3HHeJ_T0009552.1 MGP_C3HHeJ_G0007685.1 mouse_genomes_project 10 129182722 129182843 + Mir546 miRNA miRNA MGP_C3HHeJ_T0025220.1 MGP_C3HHeJ_G0017067.1 mouse_genomes_project 10 61846645 61923776 - MGP_C3HHeJ_P0025220 Tet1 protein_coding protein_coding MGP_C3HHeJ_T0025221.1 MGP_C3HHeJ_G0017067.1 mouse_genomes_project 10 61846652 61943726 - MGP_C3HHeJ_P0025221 Tet1 protein_coding protein_coding MGP_C3HHeJ_T0025222.1 MGP_C3HHeJ_G0017067.1 mouse_genomes_project 10 61854697 61856616 - MGP_C3HHeJ_P0025222 Tet1 protein_coding protein_coding MGP_C3HHeJ_T0025223.1 MGP_C3HHeJ_G0017067.1 mouse_genomes_project 10 61855201 61856617 - MGP_C3HHeJ_P0025223 Tet1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025224.1 MGP_C3HHeJ_G0017067.1 mouse_genomes_project 10 61855423 61856615 - MGP_C3HHeJ_P0025224 Tet1 protein_coding protein_coding MGP_C3HHeJ_T0025225.1 MGP_C3HHeJ_G0017067.1 mouse_genomes_project 10 61882029 61908256 - Tet1 protein_coding processed_transcript MGP_C3HHeJ_T0026423.1 MGP_C3HHeJ_G0017373.1 mouse_genomes_project 10 86451267 86477575 + MGP_C3HHeJ_P0026423 Fbxo7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026424.1 MGP_C3HHeJ_G0017373.1 mouse_genomes_project 10 86451299 86458405 + MGP_C3HHeJ_P0026424 Fbxo7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026425.1 MGP_C3HHeJ_G0017373.1 mouse_genomes_project 10 86451303 86482852 + MGP_C3HHeJ_P0026425 Fbxo7 protein_coding protein_coding MGP_C3HHeJ_T0026426.1 MGP_C3HHeJ_G0017373.1 mouse_genomes_project 10 86451469 86477605 + MGP_C3HHeJ_P0026426 Fbxo7 protein_coding protein_coding MGP_C3HHeJ_T0026427.1 MGP_C3HHeJ_G0017373.1 mouse_genomes_project 10 86462251 86481153 + Fbxo7 protein_coding processed_transcript MGP_C3HHeJ_T0026428.1 MGP_C3HHeJ_G0017373.1 mouse_genomes_project 10 86471732 86476090 + Fbxo7 protein_coding retained_intron MGP_C3HHeJ_T0025682.1 MGP_C3HHeJ_G0017172.1 mouse_genomes_project 10 77656722 77657616 + MGP_C3HHeJ_P0025682 protein_coding protein_coding MGP_C3HHeJ_T0002981.1 MGP_C3HHeJ_G0002788.1 mouse_genomes_project 10 75603431 75604733 - Gm16220 antisense antisense MGP_C3HHeJ_T0026102.1 MGP_C3HHeJ_G0017287.1 mouse_genomes_project 10 80886418 80889789 - MGP_C3HHeJ_P0026102 protein_coding protein_coding MGP_C3HHeJ_T0098699.1 MGP_C3HHeJ_G0036893.1 mouse_genomes_project 10 29013869 29013976 - Gm24168 snRNA snRNA MGP_C3HHeJ_T0024555.1 MGP_C3HHeJ_G0016852.1 mouse_genomes_project 10 22483517 22486756 + MGP_C3HHeJ_P0024555 Ctgf protein_coding protein_coding MGP_C3HHeJ_T0024556.1 MGP_C3HHeJ_G0016852.1 mouse_genomes_project 10 22483801 22486759 + MGP_C3HHeJ_P0024556 Ctgf protein_coding protein_coding MGP_C3HHeJ_T0024557.1 MGP_C3HHeJ_G0016852.1 mouse_genomes_project 10 22483855 22484448 + MGP_C3HHeJ_P0024557 Ctgf protein_coding protein_coding MGP_C3HHeJ_T0025679.1 MGP_C3HHeJ_G0017170.1 mouse_genomes_project 10 77588041 77588920 - MGP_C3HHeJ_P0025679 protein_coding protein_coding MGP_C3HHeJ_T0024558.1 MGP_C3HHeJ_G0016853.1 mouse_genomes_project 10 22529726 22600959 - MGP_C3HHeJ_P0024558 Enpp1 protein_coding protein_coding MGP_C3HHeJ_T0024559.1 MGP_C3HHeJ_G0016853.1 mouse_genomes_project 10 22533247 22600960 - MGP_C3HHeJ_P0024559 Enpp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024560.1 MGP_C3HHeJ_G0016853.1 mouse_genomes_project 10 22533618 22600792 - MGP_C3HHeJ_P0024560 Enpp1 protein_coding protein_coding MGP_C3HHeJ_T0024561.1 MGP_C3HHeJ_G0016853.1 mouse_genomes_project 10 22539410 22600798 - Enpp1 protein_coding retained_intron MGP_C3HHeJ_T0024562.1 MGP_C3HHeJ_G0016853.1 mouse_genomes_project 10 22561820 22567627 - Enpp1 protein_coding retained_intron MGP_C3HHeJ_T0006002.1 MGP_C3HHeJ_G0005016.1 mouse_genomes_project 10 14520517 14668954 - Gm20125 lincRNA lincRNA MGP_C3HHeJ_T0027298.1 MGP_C3HHeJ_G0017643.1 mouse_genomes_project 10 131085531 131105196 + MGP_C3HHeJ_P0027298 Pym1 protein_coding protein_coding MGP_C3HHeJ_T0027299.1 MGP_C3HHeJ_G0017643.1 mouse_genomes_project 10 131086107 131105196 + MGP_C3HHeJ_P0027299 Pym1 protein_coding protein_coding MGP_C3HHeJ_T0009539.1 MGP_C3HHeJ_G0007672.1 mouse_genomes_project 10 108728326 108728455 + Gm44403 miRNA miRNA MGP_C3HHeJ_T0006026.1 MGP_C3HHeJ_G0005037.1 mouse_genomes_project 10 64287343 64288185 - Gm28881 lincRNA lincRNA MGP_C3HHeJ_T0025097.1 MGP_C3HHeJ_G0017032.1 mouse_genomes_project 10 59628371 59667223 - MGP_C3HHeJ_P0025097 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025098.1 MGP_C3HHeJ_G0017032.1 mouse_genomes_project 10 59628978 59668209 - MGP_C3HHeJ_P0025098 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025099.1 MGP_C3HHeJ_G0017032.1 mouse_genomes_project 10 59629172 59637767 - protein_coding retained_intron MGP_C3HHeJ_T0025100.1 MGP_C3HHeJ_G0017032.1 mouse_genomes_project 10 59634311 59667234 - protein_coding processed_transcript MGP_C3HHeJ_T0025009.1 MGP_C3HHeJ_G0017008.1 mouse_genomes_project 10 57259234 57308673 + MGP_C3HHeJ_P0025009 Ranbp2 protein_coding protein_coding MGP_C3HHeJ_T0098716.1 MGP_C3HHeJ_G0036910.1 mouse_genomes_project 10 61937081 61937187 - Gm26479 snRNA snRNA MGP_C3HHeJ_T0097841.1 MGP_C3HHeJ_G0036053.1 mouse_genomes_project 10 118331112 118333343 + pseudogene pseudogene MGP_C3HHeJ_T0027323.1 MGP_C3HHeJ_G0017654.1 mouse_genomes_project 10 131307359 131310063 - MGP_C3HHeJ_P0027323 Mettl7b protein_coding protein_coding MGP_C3HHeJ_T0009500.1 MGP_C3HHeJ_G0007633.1 mouse_genomes_project 10 59883301 59883423 + Mir466j miRNA miRNA MGP_C3HHeJ_T0024675.1 MGP_C3HHeJ_G0016896.1 mouse_genomes_project 10 32279337 32281241 - MGP_C3HHeJ_P0024675 Fam26f protein_coding protein_coding MGP_C3HHeJ_T0006036.1 MGP_C3HHeJ_G0005043.1 mouse_genomes_project 10 72694147 72820209 - Gm15398 lincRNA lincRNA MGP_C3HHeJ_T0025004.1 MGP_C3HHeJ_G0017007.1 mouse_genomes_project 10 57126519 57232662 + MGP_C3HHeJ_P0025004 Lims1 protein_coding protein_coding MGP_C3HHeJ_T0025005.1 MGP_C3HHeJ_G0017007.1 mouse_genomes_project 10 57201494 57229754 + MGP_C3HHeJ_P0025005 Lims1 protein_coding protein_coding MGP_C3HHeJ_T0025006.1 MGP_C3HHeJ_G0017007.1 mouse_genomes_project 10 57201509 57229549 + MGP_C3HHeJ_P0025006 Lims1 protein_coding protein_coding MGP_C3HHeJ_T0025007.1 MGP_C3HHeJ_G0017007.1 mouse_genomes_project 10 57215434 57217714 + Lims1 protein_coding processed_transcript MGP_C3HHeJ_T0025008.1 MGP_C3HHeJ_G0017007.1 mouse_genomes_project 10 57224613 57229635 + Lims1 protein_coding processed_transcript MGP_C3HHeJ_T0098709.1 MGP_C3HHeJ_G0036903.1 mouse_genomes_project 10 47347478 47347562 - Gm24256 snRNA snRNA MGP_C3HHeJ_T0025758.1 MGP_C3HHeJ_G0017195.1 mouse_genomes_project 10 78730345 78735159 + MGP_C3HHeJ_P0025758 protein_coding protein_coding MGP_C3HHeJ_T0025760.1 MGP_C3HHeJ_G0017195.1 mouse_genomes_project 10 78734098 78735210 + MGP_C3HHeJ_P0025760 protein_coding protein_coding MGP_C3HHeJ_T0097975.1 MGP_C3HHeJ_G0036187.1 mouse_genomes_project 10 894932 895041 - Gm23023 rRNA rRNA MGP_C3HHeJ_T0024676.1 MGP_C3HHeJ_G0016897.1 mouse_genomes_project 10 32305050 32362355 - MGP_C3HHeJ_P0024676 Dse protein_coding protein_coding MGP_C3HHeJ_T0099959.1 MGP_C3HHeJ_G0038153.1 mouse_genomes_project 10 91783025 91783271 - Gm24119 snoRNA snoRNA MGP_C3HHeJ_T0098713.1 MGP_C3HHeJ_G0036907.1 mouse_genomes_project 10 53668544 53668606 - Gm25602 snRNA snRNA MGP_C3HHeJ_T0025915.1 MGP_C3HHeJ_G0017244.1 mouse_genomes_project 10 80040863 80089043 - MGP_C3HHeJ_P0025915 Sbno2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025916.1 MGP_C3HHeJ_G0017244.1 mouse_genomes_project 10 80040863 80089106 - MGP_C3HHeJ_P0025916 Sbno2 protein_coding protein_coding MGP_C3HHeJ_T0024864.1 MGP_C3HHeJ_G0016950.1 mouse_genomes_project 10 41549144 41729420 - MGP_C3HHeJ_P0024864 Sobp protein_coding protein_coding MGP_C3HHeJ_T0024865.1 MGP_C3HHeJ_G0016950.1 mouse_genomes_project 10 41728001 41729411 - MGP_C3HHeJ_P0024865 Sobp protein_coding protein_coding MGP_C3HHeJ_T0002988.1 MGP_C3HHeJ_G0002794.1 mouse_genomes_project 10 80274469 80275032 - Gm15122 antisense antisense MGP_C3HHeJ_T0026927.1 MGP_C3HHeJ_G0017524.1 mouse_genomes_project 10 119475744 119481611 + Cpm protein_coding processed_transcript MGP_C3HHeJ_T0026928.1 MGP_C3HHeJ_G0017524.1 mouse_genomes_project 10 119475744 119514061 + Cpm protein_coding retained_intron MGP_C3HHeJ_T0026929.1 MGP_C3HHeJ_G0017524.1 mouse_genomes_project 10 119475744 119533662 + MGP_C3HHeJ_P0026929 Cpm protein_coding protein_coding MGP_C3HHeJ_T0026930.1 MGP_C3HHeJ_G0017524.1 mouse_genomes_project 10 119522239 119531244 + Cpm protein_coding retained_intron MGP_C3HHeJ_T0026639.1 MGP_C3HHeJ_G0017419.1 mouse_genomes_project 10 94327446 94334115 - MGP_C3HHeJ_P0026639 Snrpf protein_coding protein_coding MGP_C3HHeJ_T0002948.1 MGP_C3HHeJ_G0002763.1 mouse_genomes_project 10 15397952 15402760 - Gm20655 antisense antisense MGP_C3HHeJ_T0002949.1 MGP_C3HHeJ_G0002763.1 mouse_genomes_project 10 15400536 15407365 - Gm20655 antisense antisense MGP_C3HHeJ_T0006051.1 MGP_C3HHeJ_G0005055.1 mouse_genomes_project 10 91815263 91816343 + Gm26765 lincRNA lincRNA MGP_C3HHeJ_T0026487.1 MGP_C3HHeJ_G0017390.1 mouse_genomes_project 10 88816670 88853079 - MGP_C3HHeJ_P0026487 Dram1 protein_coding protein_coding MGP_C3HHeJ_T0026488.1 MGP_C3HHeJ_G0017390.1 mouse_genomes_project 10 88816670 88853000 - MGP_C3HHeJ_P0026488 Dram1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026489.1 MGP_C3HHeJ_G0017390.1 mouse_genomes_project 10 88836988 88877586 - MGP_C3HHeJ_P0026489 Dram1 protein_coding protein_coding MGP_C3HHeJ_T0006068.1 MGP_C3HHeJ_G0005060.1 mouse_genomes_project 10 95447920 95464538 - Cep83os lincRNA lincRNA MGP_C3HHeJ_T0006078.1 MGP_C3HHeJ_G0005068.1 mouse_genomes_project 10 114279418 114338485 + 1700010J16Rik lincRNA lincRNA MGP_C3HHeJ_T0006079.1 MGP_C3HHeJ_G0005068.1 mouse_genomes_project 10 114279456 114338488 + 1700010J16Rik lincRNA lincRNA MGP_C3HHeJ_T0027293.1 MGP_C3HHeJ_G0017640.1 mouse_genomes_project 10 131034899 131042049 - MGP_C3HHeJ_P0027293 Cdk2 protein_coding protein_coding MGP_C3HHeJ_T0027294.1 MGP_C3HHeJ_G0017640.1 mouse_genomes_project 10 131034899 131042049 - MGP_C3HHeJ_P0027294 Cdk2 protein_coding protein_coding MGP_C3HHeJ_T0027357.1 MGP_C3HHeJ_G0017678.1 mouse_genomes_project 10 132031072 132032008 + MGP_C3HHeJ_P0027357 Olfr799 protein_coding protein_coding MGP_C3HHeJ_T0099982.1 MGP_C3HHeJ_G0038176.1 mouse_genomes_project 10 132080758 132080882 + Gm24717 snoRNA snoRNA MGP_C3HHeJ_T0025012.1 MGP_C3HHeJ_G0017011.1 mouse_genomes_project 10 57523130 57523415 + MGP_C3HHeJ_P0025012 BB019430 protein_coding protein_coding MGP_C3HHeJ_T0024773.1 MGP_C3HHeJ_G0016932.1 mouse_genomes_project 10 39875479 39890655 + MGP_C3HHeJ_P0024773 Zbtb24 protein_coding protein_coding MGP_C3HHeJ_T0026183.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81365501 81397039 + MGP_C3HHeJ_P0026183 Pip5k1c protein_coding protein_coding MGP_C3HHeJ_T0026184.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81365518 81395321 + MGP_C3HHeJ_P0026184 Pip5k1c protein_coding protein_coding MGP_C3HHeJ_T0026185.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81365526 81386197 + MGP_C3HHeJ_P0026185 Pip5k1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026186.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81365542 81397039 + MGP_C3HHeJ_P0026186 Pip5k1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026187.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81365543 81397040 + MGP_C3HHeJ_P0026187 Pip5k1c protein_coding protein_coding MGP_C3HHeJ_T0026188.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81387754 81390507 + MGP_C3HHeJ_P0026188 Pip5k1c protein_coding protein_coding MGP_C3HHeJ_T0026189.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81390429 81395212 + MGP_C3HHeJ_P0026189 Pip5k1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026190.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81390564 81395087 + MGP_C3HHeJ_P0026190 Pip5k1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026191.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81391054 81392849 + Pip5k1c protein_coding retained_intron MGP_C3HHeJ_T0026192.1 MGP_C3HHeJ_G0017312.1 mouse_genomes_project 10 81393908 81395080 + Pip5k1c protein_coding retained_intron MGP_C3HHeJ_T0026091.1 MGP_C3HHeJ_G0017284.1 mouse_genomes_project 10 80840438 80843824 - MGP_C3HHeJ_P0026091 Jsrp1 protein_coding protein_coding MGP_C3HHeJ_T0026092.1 MGP_C3HHeJ_G0017284.1 mouse_genomes_project 10 80840440 80845431 - MGP_C3HHeJ_P0026092 Jsrp1 protein_coding protein_coding MGP_C3HHeJ_T0026093.1 MGP_C3HHeJ_G0017284.1 mouse_genomes_project 10 80840443 80845434 - MGP_C3HHeJ_P0026093 Jsrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026094.1 MGP_C3HHeJ_G0017284.1 mouse_genomes_project 10 80842121 80845437 - MGP_C3HHeJ_P0026094 Jsrp1 protein_coding protein_coding MGP_C3HHeJ_T0027385.1 MGP_C3HHeJ_G0017696.1 mouse_genomes_project 10 132472593 132473654 + MGP_C3HHeJ_P0027385 Olfr820 protein_coding protein_coding MGP_C3HHeJ_T0006088.1 MGP_C3HHeJ_G0005074.1 mouse_genomes_project 10 129398165 129405570 + F420014N23Rik lincRNA lincRNA MGP_C3HHeJ_T0011697.1 MGP_C3HHeJ_G0009828.1 mouse_genomes_project 10 131704075 131705020 + MGP_C3HHeJ_P0011697 Olfr779 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011698.1 MGP_C3HHeJ_G0009828.1 mouse_genomes_project 10 131704420 131704810 + MGP_C3HHeJ_P0011698 Olfr779 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0027092.1 MGP_C3HHeJ_G0017576.1 mouse_genomes_project 10 129435894 129475038 - MGP_C3HHeJ_P0027092 Kif5a protein_coding protein_coding MGP_C3HHeJ_T0009506.1 MGP_C3HHeJ_G0007639.1 mouse_genomes_project 10 75851432 75851516 - Mir678 miRNA miRNA MGP_C3HHeJ_T0026090.1 MGP_C3HHeJ_G0017283.1 mouse_genomes_project 10 80836407 80838808 + MGP_C3HHeJ_P0026090 Amh protein_coding protein_coding MGP_C3HHeJ_T0026628.1 MGP_C3HHeJ_G0017415.1 mouse_genomes_project 10 94188931 94227146 + MGP_C3HHeJ_P0026628 Lta4h protein_coding protein_coding MGP_C3HHeJ_T0002974.1 MGP_C3HHeJ_G0002782.1 mouse_genomes_project 10 62125586 62127451 - Gm16143 antisense antisense MGP_C3HHeJ_T0025798.1 MGP_C3HHeJ_G0017214.1 mouse_genomes_project 10 79631087 79637808 + MGP_C3HHeJ_P0025798 Tpgs1 protein_coding protein_coding MGP_C3HHeJ_T0009532.1 MGP_C3HHeJ_G0007665.1 mouse_genomes_project 10 94706019 94706115 - Mir331 miRNA miRNA MGP_C3HHeJ_T0098750.1 MGP_C3HHeJ_G0036944.1 mouse_genomes_project 10 130609262 130609368 - Gm23241 snRNA snRNA MGP_C3HHeJ_T0012283.1 MGP_C3HHeJ_G0010387.1 mouse_genomes_project 10 7658729 7659942 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012333.1 MGP_C3HHeJ_G0010437.1 mouse_genomes_project 10 119257136 119257635 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009534.1 MGP_C3HHeJ_G0007667.1 mouse_genomes_project 10 96378146 96378237 - Mir3058 miRNA miRNA MGP_C3HHeJ_T0012281.1 MGP_C3HHeJ_G0010385.1 mouse_genomes_project 10 4783845 4784575 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026456.1 MGP_C3HHeJ_G0017382.1 mouse_genomes_project 10 87529568 87691498 + MGP_C3HHeJ_P0026456 1700113H08Rik protein_coding protein_coding MGP_C3HHeJ_T0026457.1 MGP_C3HHeJ_G0017382.1 mouse_genomes_project 10 87529569 87691497 + MGP_C3HHeJ_P0026457 1700113H08Rik protein_coding protein_coding MGP_C3HHeJ_T0026458.1 MGP_C3HHeJ_G0017382.1 mouse_genomes_project 10 87666691 87691496 + MGP_C3HHeJ_P0026458 1700113H08Rik protein_coding protein_coding MGP_C3HHeJ_T0026095.1 MGP_C3HHeJ_G0017285.1 mouse_genomes_project 10 80859414 80862049 + MGP_C3HHeJ_P0026095 Oaz1 protein_coding protein_coding MGP_C3HHeJ_T0026096.1 MGP_C3HHeJ_G0017285.1 mouse_genomes_project 10 80859440 80862043 + Oaz1 protein_coding retained_intron MGP_C3HHeJ_T0026097.1 MGP_C3HHeJ_G0017285.1 mouse_genomes_project 10 80859441 80861716 + MGP_C3HHeJ_P0026097 Oaz1 protein_coding protein_coding MGP_C3HHeJ_T0026098.1 MGP_C3HHeJ_G0017285.1 mouse_genomes_project 10 80859444 80862049 + MGP_C3HHeJ_P0026098 Oaz1 protein_coding protein_coding MGP_C3HHeJ_T0026099.1 MGP_C3HHeJ_G0017285.1 mouse_genomes_project 10 80860470 80861736 + MGP_C3HHeJ_P0026099 Oaz1 protein_coding protein_coding MGP_C3HHeJ_T0026100.1 MGP_C3HHeJ_G0017285.1 mouse_genomes_project 10 80860839 80862053 + MGP_C3HHeJ_P0026100 Oaz1 protein_coding protein_coding MGP_C3HHeJ_T0024201.1 MGP_C3HHeJ_G0016750.1 mouse_genomes_project 10 3887084 3905294 - MGP_C3HHeJ_P0024201 Gm10945 protein_coding protein_coding MGP_C3HHeJ_T0025216.1 MGP_C3HHeJ_G0017065.1 mouse_genomes_project 10 61690547 61759977 - MGP_C3HHeJ_P0025216 Stox1 protein_coding protein_coding MGP_C3HHeJ_T0025217.1 MGP_C3HHeJ_G0017065.1 mouse_genomes_project 10 61690547 61759650 - MGP_C3HHeJ_P0025217 Stox1 protein_coding protein_coding MGP_C3HHeJ_T0025218.1 MGP_C3HHeJ_G0017065.1 mouse_genomes_project 10 61697600 61759650 - MGP_C3HHeJ_P0025218 Stox1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026857.1 MGP_C3HHeJ_G0017498.1 mouse_genomes_project 10 116871063 116933065 - MGP_C3HHeJ_P0026857 Tbc1d15 protein_coding protein_coding MGP_C3HHeJ_T0011193.1 MGP_C3HHeJ_G0009326.1 mouse_genomes_project 10 116565093 116565418 - Gm25319 misc_RNA misc_RNA MGP_C3HHeJ_T0026118.1 MGP_C3HHeJ_G0017295.1 mouse_genomes_project 10 81068837 81077706 - MGP_C3HHeJ_P0026118 Slc39a3 protein_coding protein_coding MGP_C3HHeJ_T0026119.1 MGP_C3HHeJ_G0017295.1 mouse_genomes_project 10 81068839 81077588 - MGP_C3HHeJ_P0026119 Slc39a3 protein_coding protein_coding MGP_C3HHeJ_T0026120.1 MGP_C3HHeJ_G0017295.1 mouse_genomes_project 10 81068840 81074192 - MGP_C3HHeJ_P0026120 Slc39a3 protein_coding protein_coding MGP_C3HHeJ_T0026121.1 MGP_C3HHeJ_G0017295.1 mouse_genomes_project 10 81074136 81077562 - Slc39a3 protein_coding processed_transcript MGP_C3HHeJ_T0026122.1 MGP_C3HHeJ_G0017295.1 mouse_genomes_project 10 81074162 81077530 - Slc39a3 protein_coding processed_transcript MGP_C3HHeJ_T0012308.1 MGP_C3HHeJ_G0010412.1 mouse_genomes_project 10 51031036 51031596 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024291.1 MGP_C3HHeJ_G0016767.1 mouse_genomes_project 10 6930013 6982476 - MGP_C3HHeJ_P0024291 Samd5 protein_coding protein_coding MGP_C3HHeJ_T0026827.1 MGP_C3HHeJ_G0017483.1 mouse_genomes_project 10 112308542 112328829 + MGP_C3HHeJ_P0026827 Csrp2 protein_coding protein_coding MGP_C3HHeJ_T0027282.1 MGP_C3HHeJ_G0017636.1 mouse_genomes_project 10 130950888 130953694 - MGP_C3HHeJ_P0027282 Rps26 protein_coding protein_coding MGP_C3HHeJ_T0026168.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81323477 81334207 + MGP_C3HHeJ_P0026168 Matk protein_coding protein_coding MGP_C3HHeJ_T0026169.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81328520 81334587 + MGP_C3HHeJ_P0026169 Matk protein_coding protein_coding MGP_C3HHeJ_T0026170.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81328520 81334587 + MGP_C3HHeJ_P0026170 Matk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026171.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81328520 81334203 + MGP_C3HHeJ_P0026171 Matk protein_coding protein_coding MGP_C3HHeJ_T0026172.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81328526 81334203 + MGP_C3HHeJ_P0026172 Matk protein_coding protein_coding MGP_C3HHeJ_T0026173.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81328563 81334207 + Matk protein_coding retained_intron MGP_C3HHeJ_T0026174.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81328669 81331748 + Matk protein_coding retained_intron MGP_C3HHeJ_T0026175.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81329051 81330875 + MGP_C3HHeJ_P0026175 Matk protein_coding protein_coding MGP_C3HHeJ_T0026176.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81329139 81334197 + MGP_C3HHeJ_P0026176 Matk protein_coding protein_coding MGP_C3HHeJ_T0026177.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81329436 81334135 + Matk protein_coding retained_intron MGP_C3HHeJ_T0026178.1 MGP_C3HHeJ_G0017308.1 mouse_genomes_project 10 81332391 81333889 + Matk protein_coding retained_intron MGP_C3HHeJ_T0026338.1 MGP_C3HHeJ_G0017344.1 mouse_genomes_project 10 82940803 82953702 + Hcfc2 protein_coding processed_transcript MGP_C3HHeJ_T0026339.1 MGP_C3HHeJ_G0017344.1 mouse_genomes_project 10 82943660 82997341 + MGP_C3HHeJ_P0026339 Hcfc2 protein_coding protein_coding MGP_C3HHeJ_T0026340.1 MGP_C3HHeJ_G0017344.1 mouse_genomes_project 10 82943864 82956875 + MGP_C3HHeJ_P0026340 Hcfc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026341.1 MGP_C3HHeJ_G0017344.1 mouse_genomes_project 10 82982785 82996249 + MGP_C3HHeJ_P0026341 Hcfc2 protein_coding protein_coding MGP_C3HHeJ_T0011196.1 MGP_C3HHeJ_G0009329.1 mouse_genomes_project 10 131560833 131561138 - Gm25807 misc_RNA misc_RNA MGP_C3HHeJ_T0026733.1 MGP_C3HHeJ_G0017455.1 mouse_genomes_project 10 100997088 101085542 + MGP_C3HHeJ_P0026733 Kitl protein_coding protein_coding MGP_C3HHeJ_T0026734.1 MGP_C3HHeJ_G0017455.1 mouse_genomes_project 10 100997284 101061774 + MGP_C3HHeJ_P0026734 Kitl protein_coding protein_coding MGP_C3HHeJ_T0026735.1 MGP_C3HHeJ_G0017455.1 mouse_genomes_project 10 100997374 101081531 + MGP_C3HHeJ_P0026735 Kitl protein_coding protein_coding MGP_C3HHeJ_T0026215.1 MGP_C3HHeJ_G0017319.1 mouse_genomes_project 10 81445236 81457531 - MGP_C3HHeJ_P0026215 Fzr1 protein_coding protein_coding MGP_C3HHeJ_T0026216.1 MGP_C3HHeJ_G0017319.1 mouse_genomes_project 10 81446112 81457466 - MGP_C3HHeJ_P0026216 Fzr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026217.1 MGP_C3HHeJ_G0017319.1 mouse_genomes_project 10 81446386 81457478 - Fzr1 protein_coding retained_intron MGP_C3HHeJ_T0026218.1 MGP_C3HHeJ_G0017319.1 mouse_genomes_project 10 81446523 81450428 - MGP_C3HHeJ_P0026218 Fzr1 protein_coding protein_coding MGP_C3HHeJ_T0026219.1 MGP_C3HHeJ_G0017319.1 mouse_genomes_project 10 81447290 81448556 - Fzr1 protein_coding retained_intron MGP_C3HHeJ_T0026220.1 MGP_C3HHeJ_G0017319.1 mouse_genomes_project 10 81454377 81457395 - Fzr1 protein_coding processed_transcript MGP_C3HHeJ_T0027205.1 MGP_C3HHeJ_G0017611.1 mouse_genomes_project 10 130418631 130469380 - MGP_C3HHeJ_P0027205 Rbms2 protein_coding protein_coding MGP_C3HHeJ_T0025645.1 MGP_C3HHeJ_G0017158.1 mouse_genomes_project 10 77194408 77226086 - MGP_C3HHeJ_P0025645 Fam207a protein_coding protein_coding MGP_C3HHeJ_T0027104.1 MGP_C3HHeJ_G0017580.1 mouse_genomes_project 10 129508781 129524327 - MGP_C3HHeJ_P0027104 Mars protein_coding protein_coding MGP_C3HHeJ_T0027105.1 MGP_C3HHeJ_G0017580.1 mouse_genomes_project 10 129508782 129524327 - MGP_C3HHeJ_P0027105 Mars protein_coding protein_coding MGP_C3HHeJ_T0027106.1 MGP_C3HHeJ_G0017580.1 mouse_genomes_project 10 129508786 129524219 - Mars protein_coding retained_intron MGP_C3HHeJ_T0027107.1 MGP_C3HHeJ_G0017580.1 mouse_genomes_project 10 129508786 129510331 - MGP_C3HHeJ_P0027107 Mars protein_coding protein_coding MGP_C3HHeJ_T0027108.1 MGP_C3HHeJ_G0017580.1 mouse_genomes_project 10 129508909 129510242 - Mars protein_coding retained_intron MGP_C3HHeJ_T0027109.1 MGP_C3HHeJ_G0017580.1 mouse_genomes_project 10 129520571 129521509 - Mars protein_coding retained_intron MGP_C3HHeJ_T0002950.1 MGP_C3HHeJ_G0002764.1 mouse_genomes_project 10 18859895 18870034 + Gm26577 antisense antisense MGP_C3HHeJ_T0026497.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88950468 88973837 - MGP_C3HHeJ_P0026497 Chpt1 protein_coding protein_coding MGP_C3HHeJ_T0026498.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88950727 88979129 - MGP_C3HHeJ_P0026498 Chpt1 protein_coding protein_coding MGP_C3HHeJ_T0026502.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88966914 89002900 - MGP_C3HHeJ_P0026502 Chpt1 protein_coding protein_coding MGP_C3HHeJ_T0026503.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88969815 89002826 - MGP_C3HHeJ_P0026503 Chpt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026504.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88970213 89002580 - MGP_C3HHeJ_P0026504 Chpt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026505.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88970213 89002797 - MGP_C3HHeJ_P0026505 Chpt1 protein_coding protein_coding MGP_C3HHeJ_T0026506.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88970235 89002716 - MGP_C3HHeJ_P0026506 Chpt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026507.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88984326 89002745 - MGP_C3HHeJ_P0026507 Chpt1 protein_coding protein_coding MGP_C3HHeJ_T0026508.1 MGP_C3HHeJ_G0017392.1 mouse_genomes_project 10 88985775 89002752 - MGP_C3HHeJ_P0026508 Chpt1 protein_coding protein_coding MGP_C3HHeJ_T0025771.1 MGP_C3HHeJ_G0017203.1 mouse_genomes_project 10 79147484 79340083 + MGP_C3HHeJ_P0025771 protein_coding protein_coding MGP_C3HHeJ_T0024380.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11046974 11296108 - MGP_C3HHeJ_P0024380 Aig1 protein_coding protein_coding MGP_C3HHeJ_T0024381.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11047589 11295950 - MGP_C3HHeJ_P0024381 Aig1 protein_coding protein_coding MGP_C3HHeJ_T0024382.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11056686 11296085 - MGP_C3HHeJ_P0024382 Aig1 protein_coding protein_coding MGP_C3HHeJ_T0024383.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11057823 11270023 - Aig1 protein_coding processed_transcript MGP_C3HHeJ_T0024384.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11222482 11287792 - Aig1 protein_coding retained_intron MGP_C3HHeJ_T0024385.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11252078 11296104 - Aig1 protein_coding retained_intron MGP_C3HHeJ_T0024386.1 MGP_C3HHeJ_G0016786.1 mouse_genomes_project 10 11254875 11295957 - Aig1 protein_coding processed_transcript MGP_C3HHeJ_T0024551.1 MGP_C3HHeJ_G0016849.1 mouse_genomes_project 10 21979997 21981044 - MGP_C3HHeJ_P0024551 Taar9 protein_coding protein_coding MGP_C3HHeJ_T0024471.1 MGP_C3HHeJ_G0016814.1 mouse_genomes_project 10 17994694 17996483 - MGP_C3HHeJ_P0024471 4933406P04Rik protein_coding protein_coding MGP_C3HHeJ_T0025684.1 MGP_C3HHeJ_G0017173.1 mouse_genomes_project 10 77697967 77702929 - MGP_C3HHeJ_P0025684 Lrrc3 protein_coding protein_coding MGP_C3HHeJ_T0024645.1 MGP_C3HHeJ_G0016880.1 mouse_genomes_project 10 29336916 29339831 + MGP_C3HHeJ_P0024645 Gm5422 protein_coding protein_coding MGP_C3HHeJ_T0027019.1 MGP_C3HHeJ_G0017551.1 mouse_genomes_project 10 124177142 124195674 - MGP_C3HHeJ_P0027019 Tmem5 protein_coding protein_coding MGP_C3HHeJ_T0027020.1 MGP_C3HHeJ_G0017551.1 mouse_genomes_project 10 124179851 124195459 - MGP_C3HHeJ_P0027020 Tmem5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027021.1 MGP_C3HHeJ_G0017551.1 mouse_genomes_project 10 124180273 124187697 - Tmem5 protein_coding retained_intron MGP_C3HHeJ_T0027022.1 MGP_C3HHeJ_G0017551.1 mouse_genomes_project 10 124186952 124189013 - Tmem5 protein_coding retained_intron MGP_C3HHeJ_T0027023.1 MGP_C3HHeJ_G0017551.1 mouse_genomes_project 10 124187329 124194444 - Tmem5 protein_coding retained_intron MGP_C3HHeJ_T0027024.1 MGP_C3HHeJ_G0017551.1 mouse_genomes_project 10 124194363 124195429 - Tmem5 protein_coding processed_transcript MGP_C3HHeJ_T0012289.1 MGP_C3HHeJ_G0010393.1 mouse_genomes_project 10 19005774 19006784 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024541.1 MGP_C3HHeJ_G0016839.1 mouse_genomes_project 10 21806318 21807362 + MGP_C3HHeJ_P0024541 Taar4 protein_coding protein_coding MGP_C3HHeJ_T0027045.1 MGP_C3HHeJ_G0017561.1 mouse_genomes_project 10 129184992 129208598 + MGP_C3HHeJ_P0027045 Avil protein_coding protein_coding MGP_C3HHeJ_T0027046.1 MGP_C3HHeJ_G0017561.1 mouse_genomes_project 10 129185022 129191908 + MGP_C3HHeJ_P0027046 Avil protein_coding protein_coding MGP_C3HHeJ_T0027047.1 MGP_C3HHeJ_G0017561.1 mouse_genomes_project 10 129187284 129191980 + MGP_C3HHeJ_P0027047 Avil protein_coding protein_coding MGP_C3HHeJ_T0027048.1 MGP_C3HHeJ_G0017561.1 mouse_genomes_project 10 129187420 129208382 + MGP_C3HHeJ_P0027048 Avil protein_coding protein_coding MGP_C3HHeJ_T0026830.1 MGP_C3HHeJ_G0017485.1 mouse_genomes_project 10 112577399 112716521 + MGP_C3HHeJ_P0026830 Osbpl8 protein_coding protein_coding MGP_C3HHeJ_T0025504.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75139074 75153723 + MGP_C3HHeJ_P0025504 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025505.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75139125 75153770 + MGP_C3HHeJ_P0025505 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025506.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75141618 75151795 + MGP_C3HHeJ_P0025506 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025507.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75141625 75153723 + MGP_C3HHeJ_P0025507 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025508.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75143763 75156385 + MGP_C3HHeJ_P0025508 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025509.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75143768 75156833 + MGP_C3HHeJ_P0025509 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025510.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75146104 75156750 + MGP_C3HHeJ_P0025510 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025511.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75146111 75153770 + MGP_C3HHeJ_P0025511 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025512.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75146126 75163668 + MGP_C3HHeJ_P0025512 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025513.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75146127 75153522 + MGP_C3HHeJ_P0025513 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025514.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75146132 75153770 + MGP_C3HHeJ_P0025514 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025515.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75146144 75153437 + MGP_C3HHeJ_P0025515 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025516.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75148994 75156388 + MGP_C3HHeJ_P0025516 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025517.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75148999 75156828 + MGP_C3HHeJ_P0025517 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025518.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75149038 75158901 + Ggt1 protein_coding processed_transcript MGP_C3HHeJ_T0025519.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75150916 75163650 + MGP_C3HHeJ_P0025519 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025520.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75151354 75156851 + MGP_C3HHeJ_P0025520 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025521.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75153543 75162371 + MGP_C3HHeJ_P0025521 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025522.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75158837 75163626 + MGP_C3HHeJ_P0025522 Ggt1 protein_coding protein_coding MGP_C3HHeJ_T0025523.1 MGP_C3HHeJ_G0017119.1 mouse_genomes_project 10 75162572 75163659 + Ggt1 protein_coding retained_intron MGP_C3HHeJ_T0026865.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117147260 117286367 - MGP_C3HHeJ_P0026865 Lgr5 protein_coding protein_coding MGP_C3HHeJ_T0026866.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117148963 117286080 - MGP_C3HHeJ_P0026866 Lgr5 protein_coding protein_coding MGP_C3HHeJ_T0026867.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117148963 117286080 - MGP_C3HHeJ_P0026867 Lgr5 protein_coding protein_coding MGP_C3HHeJ_T0026868.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117153597 117155949 - Lgr5 protein_coding retained_intron MGP_C3HHeJ_T0026869.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117154794 117159748 - Lgr5 protein_coding retained_intron MGP_C3HHeJ_T0026870.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117159341 117286346 - Lgr5 protein_coding retained_intron MGP_C3HHeJ_T0026871.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117170056 117286346 - Lgr5 protein_coding retained_intron MGP_C3HHeJ_T0026872.1 MGP_C3HHeJ_G0017503.1 mouse_genomes_project 10 117220642 117286330 - Lgr5 protein_coding processed_transcript MGP_C3HHeJ_T0003006.1 MGP_C3HHeJ_G0002808.1 mouse_genomes_project 10 86551759 86555787 + Gm15990 antisense antisense MGP_C3HHeJ_T0024942.1 MGP_C3HHeJ_G0016985.1 mouse_genomes_project 10 51268950 51291588 + MGP_C3HHeJ_P0024942 Nus1 protein_coding protein_coding MGP_C3HHeJ_T0024943.1 MGP_C3HHeJ_G0016985.1 mouse_genomes_project 10 51280330 51284772 + MGP_C3HHeJ_P0024943 Nus1 protein_coding protein_coding MGP_C3HHeJ_T0025201.1 MGP_C3HHeJ_G0017061.1 mouse_genomes_project 10 61516828 61551213 - MGP_C3HHeJ_P0025201 Srgn protein_coding protein_coding MGP_C3HHeJ_T0025202.1 MGP_C3HHeJ_G0017061.1 mouse_genomes_project 10 61517423 61531609 - MGP_C3HHeJ_P0025202 Srgn protein_coding protein_coding MGP_C3HHeJ_T0025203.1 MGP_C3HHeJ_G0017061.1 mouse_genomes_project 10 61517679 61531792 - MGP_C3HHeJ_P0025203 Srgn protein_coding protein_coding MGP_C3HHeJ_T0025204.1 MGP_C3HHeJ_G0017061.1 mouse_genomes_project 10 61520903 61551187 - MGP_C3HHeJ_P0025204 Srgn protein_coding protein_coding MGP_C3HHeJ_T0025205.1 MGP_C3HHeJ_G0017061.1 mouse_genomes_project 10 61531529 61531951 - MGP_C3HHeJ_P0025205 Srgn protein_coding protein_coding MGP_C3HHeJ_T0025206.1 MGP_C3HHeJ_G0017061.1 mouse_genomes_project 10 61531595 61551187 - Srgn protein_coding processed_transcript MGP_C3HHeJ_T0026859.1 MGP_C3HHeJ_G0017500.1 mouse_genomes_project 10 117032043 117054192 - MGP_C3HHeJ_P0026859 Tmem19 protein_coding protein_coding MGP_C3HHeJ_T0024759.1 MGP_C3HHeJ_G0016923.1 mouse_genomes_project 10 38721072 38860181 + MGP_C3HHeJ_P0024759 Cdk19 protein_coding protein_coding MGP_C3HHeJ_T0024760.1 MGP_C3HHeJ_G0016923.1 mouse_genomes_project 10 38721072 38860181 + MGP_C3HHeJ_P0024760 Cdk19 protein_coding protein_coding MGP_C3HHeJ_T0026230.1 MGP_C3HHeJ_G0017321.1 mouse_genomes_project 10 81474398 81480214 + MGP_C3HHeJ_P0026230 Smim24 protein_coding protein_coding MGP_C3HHeJ_T0026231.1 MGP_C3HHeJ_G0017321.1 mouse_genomes_project 10 81474959 81476447 + Smim24 protein_coding processed_transcript MGP_C3HHeJ_T0025066.1 MGP_C3HHeJ_G0017027.1 mouse_genomes_project 10 59084175 59122157 - MGP_C3HHeJ_P0025066 Chst3 protein_coding protein_coding MGP_C3HHeJ_T0025067.1 MGP_C3HHeJ_G0017027.1 mouse_genomes_project 10 59084177 59091351 - MGP_C3HHeJ_P0025067 Chst3 protein_coding protein_coding MGP_C3HHeJ_T0025068.1 MGP_C3HHeJ_G0017027.1 mouse_genomes_project 10 59088248 59096849 - MGP_C3HHeJ_P0025068 Chst3 protein_coding protein_coding MGP_C3HHeJ_T0024666.1 MGP_C3HHeJ_G0016889.1 mouse_genomes_project 10 32049826 32059288 + MGP_C3HHeJ_P0024666 Rsph4a protein_coding protein_coding MGP_C3HHeJ_T0025721.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77844282 77848223 + Dnmt3l protein_coding processed_transcript MGP_C3HHeJ_T0025722.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77844622 77868219 + MGP_C3HHeJ_P0025722 Dnmt3l protein_coding protein_coding MGP_C3HHeJ_T0025723.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77853248 77868219 + MGP_C3HHeJ_P0025723 Dnmt3l protein_coding protein_coding MGP_C3HHeJ_T0025724.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77853365 77868213 + MGP_C3HHeJ_P0025724 Dnmt3l protein_coding protein_coding MGP_C3HHeJ_T0025725.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77858241 77862067 + Dnmt3l protein_coding retained_intron MGP_C3HHeJ_T0025726.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77858741 77868212 + MGP_C3HHeJ_P0025726 Dnmt3l protein_coding protein_coding MGP_C3HHeJ_T0025727.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77858741 77868212 + MGP_C3HHeJ_P0025727 Dnmt3l protein_coding protein_coding MGP_C3HHeJ_T0025728.1 MGP_C3HHeJ_G0017178.1 mouse_genomes_project 10 77858741 77868212 + MGP_C3HHeJ_P0025728 Dnmt3l protein_coding protein_coding MGP_C3HHeJ_T0099980.1 MGP_C3HHeJ_G0038174.1 mouse_genomes_project 10 130662886 130663021 + Gm23182 snoRNA snoRNA MGP_C3HHeJ_T0027386.1 MGP_C3HHeJ_G0017697.1 mouse_genomes_project 10 132486390 132490589 + MGP_C3HHeJ_P0027386 Olfr821 protein_coding protein_coding MGP_C3HHeJ_T0027387.1 MGP_C3HHeJ_G0017697.1 mouse_genomes_project 10 132489656 132490589 + MGP_C3HHeJ_P0027387 Olfr821 protein_coding protein_coding MGP_C3HHeJ_T0098696.1 MGP_C3HHeJ_G0036890.1 mouse_genomes_project 10 22799764 22799871 + Gm23410 snRNA snRNA MGP_C3HHeJ_T0024888.1 MGP_C3HHeJ_G0016961.1 mouse_genomes_project 10 42808774 42820313 + MGP_C3HHeJ_P0024888 protein_coding protein_coding MGP_C3HHeJ_T0025530.1 MGP_C3HHeJ_G0017122.1 mouse_genomes_project 10 75225329 75346702 - MGP_C3HHeJ_P0025530 Cabin1 protein_coding protein_coding MGP_C3HHeJ_T0027177.1 MGP_C3HHeJ_G0017602.1 mouse_genomes_project 10 130100318 130111775 + MGP_C3HHeJ_P0027177 Rdh19 protein_coding protein_coding MGP_C3HHeJ_T0097839.1 MGP_C3HHeJ_G0036051.1 mouse_genomes_project 10 72584924 72585396 + pseudogene pseudogene MGP_C3HHeJ_T0026799.1 MGP_C3HHeJ_G0017474.1 mouse_genomes_project 10 108730829 108734076 - MGP_C3HHeJ_P0026799 Myf5 protein_coding protein_coding MGP_C3HHeJ_T0024809.1 MGP_C3HHeJ_G0016938.1 mouse_genomes_project 10 40062965 40089145 - MGP_C3HHeJ_P0024809 protein_coding protein_coding MGP_C3HHeJ_T0024622.1 MGP_C3HHeJ_G0016869.1 mouse_genomes_project 10 27149967 27150882 - MGP_C3HHeJ_P0024622 Gm9996 protein_coding protein_coding MGP_C3HHeJ_T0027011.1 MGP_C3HHeJ_G0017549.1 mouse_genomes_project 10 123827495 123840954 + MGP_C3HHeJ_P0027011 BC048403 protein_coding protein_coding MGP_C3HHeJ_T0027012.1 MGP_C3HHeJ_G0017549.1 mouse_genomes_project 10 123827496 123840967 + MGP_C3HHeJ_P0027012 BC048403 protein_coding protein_coding MGP_C3HHeJ_T0027013.1 MGP_C3HHeJ_G0017549.1 mouse_genomes_project 10 123838435 123839929 + BC048403 protein_coding processed_transcript MGP_C3HHeJ_T0000800.1 MGP_C3HHeJ_G0000741.1 mouse_genomes_project 10 111394766 111395058 - TEC TEC MGP_C3HHeJ_T0025585.1 MGP_C3HHeJ_G0017144.1 mouse_genomes_project 10 76126302 76136659 - MGP_C3HHeJ_P0025585 Ybey protein_coding protein_coding MGP_C3HHeJ_T0026382.1 MGP_C3HHeJ_G0017356.1 mouse_genomes_project 10 84874318 84881902 - MGP_C3HHeJ_P0026382 Ckap4 protein_coding protein_coding MGP_C3HHeJ_T0026383.1 MGP_C3HHeJ_G0017356.1 mouse_genomes_project 10 84874649 84882050 - MGP_C3HHeJ_P0026383 Ckap4 protein_coding protein_coding MGP_C3HHeJ_T0025267.1 MGP_C3HHeJ_G0017077.1 mouse_genomes_project 10 62479522 62500128 + Dnajc12 protein_coding retained_intron MGP_C3HHeJ_T0025268.1 MGP_C3HHeJ_G0017077.1 mouse_genomes_project 10 62479621 62500097 + MGP_C3HHeJ_P0025268 Dnajc12 protein_coding protein_coding MGP_C3HHeJ_T0024946.1 MGP_C3HHeJ_G0016988.1 mouse_genomes_project 10 52227449 52236560 + MGP_C3HHeJ_P0024946 Pln protein_coding protein_coding MGP_C3HHeJ_T0024947.1 MGP_C3HHeJ_G0016988.1 mouse_genomes_project 10 52227449 52236560 + MGP_C3HHeJ_P0024947 Pln protein_coding protein_coding MGP_C3HHeJ_T0027114.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129607427 129676541 + MGP_C3HHeJ_P0027114 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027115.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129607762 129733069 + MGP_C3HHeJ_P0027115 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027116.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129618364 129733092 + MGP_C3HHeJ_P0027116 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027117.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129618364 129733092 + MGP_C3HHeJ_P0027117 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027118.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129652446 129683885 + MGP_C3HHeJ_P0027118 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027119.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129652975 129733058 + MGP_C3HHeJ_P0027119 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027120.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129653232 129732744 + MGP_C3HHeJ_P0027120 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027121.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129653340 129684652 + MGP_C3HHeJ_P0027121 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027122.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129676460 129733076 + MGP_C3HHeJ_P0027122 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027123.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129676460 129733093 + MGP_C3HHeJ_P0027123 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027124.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129676460 129732422 + MGP_C3HHeJ_P0027124 R3hdm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027125.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129676460 129732422 + MGP_C3HHeJ_P0027125 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027126.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129692672 129698386 + MGP_C3HHeJ_P0027126 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027127.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129692698 129698516 + R3hdm2 protein_coding retained_intron MGP_C3HHeJ_T0027128.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129692702 129733092 + MGP_C3HHeJ_P0027128 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027129.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129692742 129717495 + R3hdm2 protein_coding processed_transcript MGP_C3HHeJ_T0027130.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129714655 129717886 + R3hdm2 protein_coding retained_intron MGP_C3HHeJ_T0027131.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129718632 129726469 + R3hdm2 protein_coding retained_intron MGP_C3HHeJ_T0027132.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129718823 129728858 + MGP_C3HHeJ_P0027132 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0027133.1 MGP_C3HHeJ_G0017585.1 mouse_genomes_project 10 129726401 129733076 + MGP_C3HHeJ_P0027133 R3hdm2 protein_coding protein_coding MGP_C3HHeJ_T0009484.1 MGP_C3HHeJ_G0007617.1 mouse_genomes_project 10 17978657 17978765 - Mir6413 miRNA miRNA MGP_C3HHeJ_T0099938.1 MGP_C3HHeJ_G0038132.1 mouse_genomes_project 10 36522506 36522574 + Gm24297 snoRNA snoRNA MGP_C3HHeJ_T0026299.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81721909 81731661 + MGP_C3HHeJ_P0026299 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026300.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81721948 81723117 + MGP_C3HHeJ_P0026300 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026301.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81722002 81744477 + MGP_C3HHeJ_P0026301 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026302.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81722075 81723112 + MGP_C3HHeJ_P0026302 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026303.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81727064 81737812 + MGP_C3HHeJ_P0026303 Ankrd24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026304.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81727068 81744474 + Ankrd24 protein_coding retained_intron MGP_C3HHeJ_T0026305.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81727068 81729782 + MGP_C3HHeJ_P0026305 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026306.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81727074 81729259 + Ankrd24 protein_coding retained_intron MGP_C3HHeJ_T0026307.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81727074 81733260 + MGP_C3HHeJ_P0026307 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026308.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81727082 81733604 + MGP_C3HHeJ_P0026308 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026309.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81735720 81737752 + MGP_C3HHeJ_P0026309 Ankrd24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026310.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81735732 81740770 + Ankrd24 protein_coding retained_intron MGP_C3HHeJ_T0026311.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81738603 81744341 + MGP_C3HHeJ_P0026311 Ankrd24 protein_coding protein_coding MGP_C3HHeJ_T0026312.1 MGP_C3HHeJ_G0017333.1 mouse_genomes_project 10 81741434 81741964 + Ankrd24 protein_coding retained_intron MGP_C3HHeJ_T0027322.1 MGP_C3HHeJ_G0017653.1 mouse_genomes_project 10 131282910 131307360 + MGP_C3HHeJ_P0027322 Itga7 protein_coding protein_coding MGP_C3HHeJ_T0024898.1 MGP_C3HHeJ_G0016968.1 mouse_genomes_project 10 43816537 43957548 + MGP_C3HHeJ_P0024898 Popdc3 protein_coding protein_coding MGP_C3HHeJ_T0024899.1 MGP_C3HHeJ_G0016968.1 mouse_genomes_project 10 43930272 43960886 + MGP_C3HHeJ_P0024899 Popdc3 protein_coding protein_coding MGP_C3HHeJ_T0024900.1 MGP_C3HHeJ_G0016968.1 mouse_genomes_project 10 43930369 43960551 + MGP_C3HHeJ_P0024900 Popdc3 protein_coding protein_coding MGP_C3HHeJ_T0003034.1 MGP_C3HHeJ_G0002826.1 mouse_genomes_project 10 122399242 122402503 + 9230105E05Rik antisense antisense MGP_C3HHeJ_T0026101.1 MGP_C3HHeJ_G0017286.1 mouse_genomes_project 10 80865565 80876798 - MGP_C3HHeJ_P0026101 Lingo3 protein_coding protein_coding MGP_C3HHeJ_T0027180.1 MGP_C3HHeJ_G0017605.1 mouse_genomes_project 10 130148654 130161883 + MGP_C3HHeJ_P0027180 Sdr9c7 protein_coding protein_coding MGP_C3HHeJ_T0027181.1 MGP_C3HHeJ_G0017605.1 mouse_genomes_project 10 130148911 130161872 + Sdr9c7 protein_coding processed_transcript MGP_C3HHeJ_T0027182.1 MGP_C3HHeJ_G0017605.1 mouse_genomes_project 10 130152178 130160508 + Sdr9c7 protein_coding processed_transcript MGP_C3HHeJ_T0027183.1 MGP_C3HHeJ_G0017605.1 mouse_genomes_project 10 130153554 130160459 + Sdr9c7 protein_coding processed_transcript MGP_C3HHeJ_T0009503.1 MGP_C3HHeJ_G0007636.1 mouse_genomes_project 10 61201393 61201454 - Mir7662 miRNA miRNA MGP_C3HHeJ_T0026836.1 MGP_C3HHeJ_G0017489.1 mouse_genomes_project 10 113436497 113453031 + MGP_C3HHeJ_P0026836 Krr1 protein_coding protein_coding MGP_C3HHeJ_T0026837.1 MGP_C3HHeJ_G0017489.1 mouse_genomes_project 10 113436590 113440359 + Krr1 protein_coding retained_intron MGP_C3HHeJ_T0026838.1 MGP_C3HHeJ_G0017489.1 mouse_genomes_project 10 113436608 113450674 + Krr1 protein_coding retained_intron MGP_C3HHeJ_T0026839.1 MGP_C3HHeJ_G0017489.1 mouse_genomes_project 10 113436626 113448461 + MGP_C3HHeJ_P0026839 Krr1 protein_coding protein_coding MGP_C3HHeJ_T0099943.1 MGP_C3HHeJ_G0038137.1 mouse_genomes_project 10 43909539 43909668 - Gm26016 snoRNA snoRNA MGP_C3HHeJ_T0101610.1 MGP_C3HHeJ_G0039576.1 mouse_genomes_project 10 4695193 4707596 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098737.1 MGP_C3HHeJ_G0036931.1 mouse_genomes_project 10 105393800 105393862 - Gm22339 snRNA snRNA MGP_C3HHeJ_T0024423.1 MGP_C3HHeJ_G0016797.1 mouse_genomes_project 10 15767964 15860386 - MGP_C3HHeJ_P0024423 Ect2l protein_coding protein_coding MGP_C3HHeJ_T0026672.1 MGP_C3HHeJ_G0017425.1 mouse_genomes_project 10 94781137 94895163 + MGP_C3HHeJ_P0026672 Fgd6 protein_coding protein_coding MGP_C3HHeJ_T0026673.1 MGP_C3HHeJ_G0017425.1 mouse_genomes_project 10 94820580 94837483 + Fgd6 protein_coding processed_transcript MGP_C3HHeJ_T0026674.1 MGP_C3HHeJ_G0017425.1 mouse_genomes_project 10 94882731 94889662 + Fgd6 protein_coding retained_intron MGP_C3HHeJ_T0027338.1 MGP_C3HHeJ_G0017664.1 mouse_genomes_project 10 131717638 131718663 + MGP_C3HHeJ_P0027338 Olfr780 protein_coding protein_coding MGP_C3HHeJ_T0025503.1 MGP_C3HHeJ_G0017118.1 mouse_genomes_project 10 75127634 75137801 - MGP_C3HHeJ_P0025503 Lrrc75b protein_coding protein_coding MGP_C3HHeJ_T0024670.1 MGP_C3HHeJ_G0016892.1 mouse_genomes_project 10 32143976 32167080 - MGP_C3HHeJ_P0024670 Rwdd1 protein_coding protein_coding MGP_C3HHeJ_T0024671.1 MGP_C3HHeJ_G0016892.1 mouse_genomes_project 10 32143982 32148669 - Rwdd1 protein_coding retained_intron MGP_C3HHeJ_T0027359.1 MGP_C3HHeJ_G0017680.1 mouse_genomes_project 10 132052716 132054530 - MGP_C3HHeJ_P0027359 Olfr801 protein_coding protein_coding MGP_C3HHeJ_T0027360.1 MGP_C3HHeJ_G0017680.1 mouse_genomes_project 10 132054130 132057999 - MGP_C3HHeJ_P0027360 Olfr801 protein_coding protein_coding MGP_C3HHeJ_T0027361.1 MGP_C3HHeJ_G0017680.1 mouse_genomes_project 10 132056389 132057971 - Olfr801 protein_coding processed_transcript MGP_C3HHeJ_T0012329.1 MGP_C3HHeJ_G0010433.1 mouse_genomes_project 10 103591134 103592079 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027344.1 MGP_C3HHeJ_G0017668.1 mouse_genomes_project 10 131791398 131792337 + MGP_C3HHeJ_P0027344 Gm44444 protein_coding protein_coding MGP_C3HHeJ_T0026604.1 MGP_C3HHeJ_G0017410.1 mouse_genomes_project 10 91813319 91837361 - MGP_C3HHeJ_P0026604 Tmpo protein_coding protein_coding MGP_C3HHeJ_T0026605.1 MGP_C3HHeJ_G0017410.1 mouse_genomes_project 10 91813319 91837361 - MGP_C3HHeJ_P0026605 Tmpo protein_coding protein_coding MGP_C3HHeJ_T0026606.1 MGP_C3HHeJ_G0017410.1 mouse_genomes_project 10 91813319 91837361 - MGP_C3HHeJ_P0026606 Tmpo protein_coding protein_coding MGP_C3HHeJ_T0026607.1 MGP_C3HHeJ_G0017410.1 mouse_genomes_project 10 91813319 91837361 - MGP_C3HHeJ_P0026607 Tmpo protein_coding protein_coding MGP_C3HHeJ_T0026608.1 MGP_C3HHeJ_G0017410.1 mouse_genomes_project 10 91826165 91837361 - MGP_C3HHeJ_P0026608 Tmpo protein_coding protein_coding MGP_C3HHeJ_T0025834.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826455 79836306 + MGP_C3HHeJ_P0025834 Ptbp1 protein_coding protein_coding MGP_C3HHeJ_T0025835.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826633 79831741 + Ptbp1 protein_coding retained_intron MGP_C3HHeJ_T0025836.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826657 79837804 + MGP_C3HHeJ_P0025836 Ptbp1 protein_coding protein_coding MGP_C3HHeJ_T0025837.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826661 79835847 + Ptbp1 protein_coding retained_intron MGP_C3HHeJ_T0025838.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826669 79831642 + Ptbp1 protein_coding processed_transcript MGP_C3HHeJ_T0025839.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826680 79835453 + MGP_C3HHeJ_P0025839 Ptbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025840.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826693 79831043 + MGP_C3HHeJ_P0025840 Ptbp1 protein_coding protein_coding MGP_C3HHeJ_T0025841.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826695 79831073 + Ptbp1 protein_coding processed_transcript MGP_C3HHeJ_T0025842.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826695 79831393 + MGP_C3HHeJ_P0025842 Ptbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025843.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79826696 79836306 + MGP_C3HHeJ_P0025843 Ptbp1 protein_coding protein_coding MGP_C3HHeJ_T0025844.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79827066 79831125 + MGP_C3HHeJ_P0025844 Ptbp1 protein_coding protein_coding MGP_C3HHeJ_T0025845.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79830800 79831416 + MGP_C3HHeJ_P0025845 Ptbp1 protein_coding protein_coding MGP_C3HHeJ_T0025846.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79831022 79832154 + Ptbp1 protein_coding retained_intron MGP_C3HHeJ_T0025847.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79831678 79835082 + MGP_C3HHeJ_P0025847 Ptbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025849.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79833766 79835079 + Ptbp1 protein_coding retained_intron MGP_C3HHeJ_T0025850.1 MGP_C3HHeJ_G0017226.1 mouse_genomes_project 10 79834045 79836306 + Ptbp1 protein_coding retained_intron MGP_C3HHeJ_T0025193.1 MGP_C3HHeJ_G0017058.1 mouse_genomes_project 10 61451229 61471747 - MGP_C3HHeJ_P0025193 Supv3l1 protein_coding protein_coding MGP_C3HHeJ_T0025194.1 MGP_C3HHeJ_G0017058.1 mouse_genomes_project 10 61451275 61471692 - MGP_C3HHeJ_P0025194 Supv3l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025195.1 MGP_C3HHeJ_G0017058.1 mouse_genomes_project 10 61451360 61452642 - Supv3l1 protein_coding retained_intron MGP_C3HHeJ_T0025196.1 MGP_C3HHeJ_G0017058.1 mouse_genomes_project 10 61451463 61452989 - Supv3l1 protein_coding retained_intron MGP_C3HHeJ_T0025197.1 MGP_C3HHeJ_G0017058.1 mouse_genomes_project 10 61454379 61455148 - Supv3l1 protein_coding processed_transcript MGP_C3HHeJ_T0098707.1 MGP_C3HHeJ_G0036901.1 mouse_genomes_project 10 45047915 45048022 + Gm25740 snRNA snRNA MGP_C3HHeJ_T0024412.1 MGP_C3HHeJ_G0016794.1 mouse_genomes_project 10 15519023 15575284 - MGP_C3HHeJ_P0024412 Heca protein_coding protein_coding MGP_C3HHeJ_T0025885.1 MGP_C3HHeJ_G0017237.1 mouse_genomes_project 10 79950488 79956964 + MGP_C3HHeJ_P0025885 Grin3b protein_coding protein_coding MGP_C3HHeJ_T0025886.1 MGP_C3HHeJ_G0017237.1 mouse_genomes_project 10 79953510 79956489 + MGP_C3HHeJ_P0025886 Grin3b protein_coding protein_coding MGP_C3HHeJ_T0025887.1 MGP_C3HHeJ_G0017237.1 mouse_genomes_project 10 79954182 79956898 + MGP_C3HHeJ_P0025887 Grin3b protein_coding protein_coding MGP_C3HHeJ_T0027383.1 MGP_C3HHeJ_G0017694.1 mouse_genomes_project 10 132397492 132398639 - MGP_C3HHeJ_P0027383 protein_coding protein_coding MGP_C3HHeJ_T0026911.1 MGP_C3HHeJ_G0017516.1 mouse_genomes_project 10 118819675 118832532 - MGP_C3HHeJ_P0026911 Cct2 protein_coding protein_coding MGP_C3HHeJ_T0024545.1 MGP_C3HHeJ_G0016843.1 mouse_genomes_project 10 21848378 21849501 + MGP_C3HHeJ_P0024545 protein_coding protein_coding MGP_C3HHeJ_T0024994.1 MGP_C3HHeJ_G0017005.1 mouse_genomes_project 10 57033458 57034995 - MGP_C3HHeJ_P0024994 protein_coding protein_coding MGP_C3HHeJ_T0099935.1 MGP_C3HHeJ_G0038129.1 mouse_genomes_project 10 33287095 33287229 + Gm26341 snoRNA snoRNA MGP_C3HHeJ_T0025903.1 MGP_C3HHeJ_G0017242.1 mouse_genomes_project 10 80018953 80020190 - Polr2e protein_coding retained_intron MGP_C3HHeJ_T0025904.1 MGP_C3HHeJ_G0017242.1 mouse_genomes_project 10 80018953 80022715 - Polr2e protein_coding retained_intron MGP_C3HHeJ_T0025905.1 MGP_C3HHeJ_G0017242.1 mouse_genomes_project 10 80018953 80022800 - MGP_C3HHeJ_P0025905 Polr2e protein_coding protein_coding MGP_C3HHeJ_T0025906.1 MGP_C3HHeJ_G0017242.1 mouse_genomes_project 10 80018955 80022655 - Polr2e protein_coding retained_intron MGP_C3HHeJ_T0025907.1 MGP_C3HHeJ_G0017242.1 mouse_genomes_project 10 80019179 80022706 - Polr2e protein_coding retained_intron MGP_C3HHeJ_T0025753.1 MGP_C3HHeJ_G0017191.1 mouse_genomes_project 10 78573649 78579892 - MGP_C3HHeJ_P0025753 Casp14 protein_coding protein_coding MGP_C3HHeJ_T0101614.1 MGP_C3HHeJ_G0039580.1 mouse_genomes_project 10 77643672 77645681 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0026232.1 MGP_C3HHeJ_G0017322.1 mouse_genomes_project 10 81477457 81509473 - MGP_C3HHeJ_P0026232 Nfic protein_coding protein_coding MGP_C3HHeJ_T0026233.1 MGP_C3HHeJ_G0017322.1 mouse_genomes_project 10 81480409 81509459 - MGP_C3HHeJ_P0026233 Nfic protein_coding protein_coding MGP_C3HHeJ_T0026234.1 MGP_C3HHeJ_G0017322.1 mouse_genomes_project 10 81480409 81509400 - MGP_C3HHeJ_P0026234 Nfic protein_coding protein_coding MGP_C3HHeJ_T0026235.1 MGP_C3HHeJ_G0017322.1 mouse_genomes_project 10 81480467 81481826 - Nfic protein_coding processed_transcript MGP_C3HHeJ_T0026236.1 MGP_C3HHeJ_G0017322.1 mouse_genomes_project 10 81482040 81489975 - MGP_C3HHeJ_P0026236 Nfic protein_coding protein_coding MGP_C3HHeJ_T0026237.1 MGP_C3HHeJ_G0017322.1 mouse_genomes_project 10 81482224 81513291 - MGP_C3HHeJ_P0026237 Nfic protein_coding protein_coding MGP_C3HHeJ_T0026992.1 MGP_C3HHeJ_G0017539.1 mouse_genomes_project 10 122804672 122817822 + MGP_C3HHeJ_P0026992 4921513I03Rik protein_coding protein_coding MGP_C3HHeJ_T0024823.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40369751 40490524 - MGP_C3HHeJ_P0024823 protein_coding protein_coding MGP_C3HHeJ_T0024824.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40369754 40441500 - protein_coding retained_intron MGP_C3HHeJ_T0024825.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40369761 40490475 - MGP_C3HHeJ_P0024825 protein_coding protein_coding MGP_C3HHeJ_T0024826.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40370812 40440878 - protein_coding retained_intron MGP_C3HHeJ_T0024827.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40371572 40490530 - MGP_C3HHeJ_P0024827 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024828.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40451369 40462735 - MGP_C3HHeJ_P0024828 protein_coding protein_coding MGP_C3HHeJ_T0024829.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40469340 40490473 - MGP_C3HHeJ_P0024829 protein_coding protein_coding MGP_C3HHeJ_T0024830.1 MGP_C3HHeJ_G0016942.1 mouse_genomes_project 10 40469881 40490475 - MGP_C3HHeJ_P0024830 protein_coding protein_coding MGP_C3HHeJ_T0024564.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22774452 22819546 + MGP_C3HHeJ_P0024564 Med23 protein_coding protein_coding MGP_C3HHeJ_T0024565.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22774503 22800134 + Med23 protein_coding retained_intron MGP_C3HHeJ_T0024566.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22774503 22812624 + MGP_C3HHeJ_P0024566 Med23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024567.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22774513 22819324 + MGP_C3HHeJ_P0024567 Med23 protein_coding protein_coding MGP_C3HHeJ_T0024568.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22774564 22804303 + Med23 protein_coding processed_transcript MGP_C3HHeJ_T0024569.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22774775 22782924 + MGP_C3HHeJ_P0024569 Med23 protein_coding protein_coding MGP_C3HHeJ_T0024570.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22775108 22780164 + Med23 protein_coding retained_intron MGP_C3HHeJ_T0024571.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22781438 22798386 + MGP_C3HHeJ_P0024571 Med23 protein_coding protein_coding MGP_C3HHeJ_T0024572.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22794200 22818883 + MGP_C3HHeJ_P0024572 Med23 protein_coding protein_coding MGP_C3HHeJ_T0024573.1 MGP_C3HHeJ_G0016855.1 mouse_genomes_project 10 22796712 22798378 + Med23 protein_coding retained_intron MGP_C3HHeJ_T0027243.1 MGP_C3HHeJ_G0017623.1 mouse_genomes_project 10 130676542 130683478 - MGP_C3HHeJ_P0027243 Coq10a protein_coding protein_coding MGP_C3HHeJ_T0026771.1 MGP_C3HHeJ_G0017465.1 mouse_genomes_project 10 104159063 104183539 - MGP_C3HHeJ_P0026771 Alx1 protein_coding protein_coding MGP_C3HHeJ_T0026772.1 MGP_C3HHeJ_G0017465.1 mouse_genomes_project 10 104159064 104183267 - MGP_C3HHeJ_P0026772 Alx1 protein_coding protein_coding MGP_C3HHeJ_T0026773.1 MGP_C3HHeJ_G0017465.1 mouse_genomes_project 10 104159368 104175768 - Alx1 protein_coding processed_transcript MGP_C3HHeJ_T0012314.1 MGP_C3HHeJ_G0010418.1 mouse_genomes_project 10 66527016 66544644 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025128.1 MGP_C3HHeJ_G0017042.1 mouse_genomes_project 10 60447447 60449140 - MGP_C3HHeJ_P0025128 D830039M14Rik protein_coding protein_coding MGP_C3HHeJ_T0016907.1 MGP_C3HHeJ_G0014901.1 mouse_genomes_project 10 122372454 122392826 + 1700006J14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016908.1 MGP_C3HHeJ_G0014901.1 mouse_genomes_project 10 122372454 122393819 + 1700006J14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016909.1 MGP_C3HHeJ_G0014901.1 mouse_genomes_project 10 122372454 122394326 + 1700006J14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012307.1 MGP_C3HHeJ_G0010411.1 mouse_genomes_project 10 50954673 50955224 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026644.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94596984 94628418 - MGP_C3HHeJ_P0026644 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026645.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94598322 94602645 - Metap2 protein_coding retained_intron MGP_C3HHeJ_T0026646.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94599422 94629810 - MGP_C3HHeJ_P0026646 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026647.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94599423 94628388 - MGP_C3HHeJ_P0026647 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026648.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94599423 94628379 - MGP_C3HHeJ_P0026648 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026649.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94600075 94610230 - MGP_C3HHeJ_P0026649 Metap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026650.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94600725 94602580 - Metap2 protein_coding retained_intron MGP_C3HHeJ_T0026651.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94600725 94604107 - MGP_C3HHeJ_P0026651 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026652.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94607413 94610088 - Metap2 protein_coding retained_intron MGP_C3HHeJ_T0026653.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94607510 94628220 - MGP_C3HHeJ_P0026653 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026654.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94608767 94628418 - MGP_C3HHeJ_P0026654 Metap2 protein_coding protein_coding MGP_C3HHeJ_T0026655.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94618051 94628332 - Metap2 protein_coding retained_intron MGP_C3HHeJ_T0026656.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94618130 94628365 - Metap2 protein_coding retained_intron MGP_C3HHeJ_T0026657.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94628294 94628902 - Metap2 protein_coding processed_transcript MGP_C3HHeJ_T0026658.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94628531 94629737 - Metap2 protein_coding processed_transcript MGP_C3HHeJ_T0026659.1 MGP_C3HHeJ_G0017423.1 mouse_genomes_project 10 94628648 94635577 - Metap2 protein_coding processed_transcript MGP_C3HHeJ_T0025189.1 MGP_C3HHeJ_G0017057.1 mouse_genomes_project 10 61401854 61442897 - MGP_C3HHeJ_P0025189 Hkdc1 protein_coding protein_coding MGP_C3HHeJ_T0025190.1 MGP_C3HHeJ_G0017057.1 mouse_genomes_project 10 61414348 61419551 - Hkdc1 protein_coding retained_intron MGP_C3HHeJ_T0025191.1 MGP_C3HHeJ_G0017057.1 mouse_genomes_project 10 61428822 61430838 - Hkdc1 protein_coding retained_intron MGP_C3HHeJ_T0025192.1 MGP_C3HHeJ_G0017057.1 mouse_genomes_project 10 61436788 61442814 - Hkdc1 protein_coding retained_intron MGP_C3HHeJ_T0024952.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533472 52656765 - MGP_C3HHeJ_P0024952 Fam184a protein_coding protein_coding MGP_C3HHeJ_T0024953.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533693 52590826 - MGP_C3HHeJ_P0024953 Fam184a protein_coding protein_coding MGP_C3HHeJ_T0024954.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533696 52555314 - MGP_C3HHeJ_P0024954 Fam184a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024955.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533697 52595482 - MGP_C3HHeJ_P0024955 Fam184a protein_coding protein_coding MGP_C3HHeJ_T0024956.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533957 52547379 - MGP_C3HHeJ_P0024956 Fam184a protein_coding protein_coding MGP_C3HHeJ_T0024957.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533961 52538597 - MGP_C3HHeJ_P0024957 Fam184a protein_coding protein_coding MGP_C3HHeJ_T0024958.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52533961 52656657 - MGP_C3HHeJ_P0024958 Fam184a protein_coding unknown_likely_coding MGP_C3HHeJ_T0024959.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52538507 52574155 - Fam184a protein_coding processed_transcript MGP_C3HHeJ_T0024960.1 MGP_C3HHeJ_G0016992.1 mouse_genomes_project 10 52593135 52656794 - Fam184a protein_coding retained_intron MGP_C3HHeJ_T0027241.1 MGP_C3HHeJ_G0017621.1 mouse_genomes_project 10 130635948 130640475 + MGP_C3HHeJ_P0027241 Cnpy2 protein_coding protein_coding MGP_C3HHeJ_T0027372.1 MGP_C3HHeJ_G0017687.1 mouse_genomes_project 10 132175329 132177648 + MGP_C3HHeJ_P0027372 protein_coding protein_coding MGP_C3HHeJ_T0027373.1 MGP_C3HHeJ_G0017687.1 mouse_genomes_project 10 132177189 132178483 + MGP_C3HHeJ_P0027373 protein_coding protein_coding MGP_C3HHeJ_T0005997.1 MGP_C3HHeJ_G0005013.1 mouse_genomes_project 10 8589908 8627109 - 4930432B10Rik lincRNA lincRNA MGP_C3HHeJ_T0005998.1 MGP_C3HHeJ_G0005013.1 mouse_genomes_project 10 8600962 8627331 - 4930432B10Rik lincRNA lincRNA MGP_C3HHeJ_T0026316.1 MGP_C3HHeJ_G0017337.1 mouse_genomes_project 10 82280123 82307487 + MGP_C3HHeJ_P0026316 AU041133 protein_coding protein_coding MGP_C3HHeJ_T0026317.1 MGP_C3HHeJ_G0017337.1 mouse_genomes_project 10 82290374 82306433 + MGP_C3HHeJ_P0026317 AU041133 protein_coding protein_coding MGP_C3HHeJ_T0024250.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4807680 4852416 - MGP_C3HHeJ_P0024250 Pcmt1 protein_coding protein_coding MGP_C3HHeJ_T0024251.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4807680 4852072 - MGP_C3HHeJ_P0024251 Pcmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024252.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4807688 4852111 - MGP_C3HHeJ_P0024252 Pcmt1 protein_coding protein_coding MGP_C3HHeJ_T0024253.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4813331 4831025 - MGP_C3HHeJ_P0024253 Pcmt1 protein_coding protein_coding MGP_C3HHeJ_T0024254.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4813331 4852069 - MGP_C3HHeJ_P0024254 Pcmt1 protein_coding protein_coding MGP_C3HHeJ_T0024255.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4815258 4852416 - Pcmt1 protein_coding retained_intron MGP_C3HHeJ_T0024256.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4826050 4880650 - MGP_C3HHeJ_P0024256 Pcmt1 protein_coding protein_coding MGP_C3HHeJ_T0024257.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4829464 4833555 - MGP_C3HHeJ_P0024257 Pcmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024258.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4829489 4880644 - MGP_C3HHeJ_P0024258 Pcmt1 protein_coding protein_coding MGP_C3HHeJ_T0024259.1 MGP_C3HHeJ_G0016756.1 mouse_genomes_project 10 4830834 4852072 - Pcmt1 protein_coding retained_intron MGP_C3HHeJ_T0025832.1 MGP_C3HHeJ_G0017225.1 mouse_genomes_project 10 79790938 79801360 + MGP_C3HHeJ_P0025832 Misp protein_coding protein_coding MGP_C3HHeJ_T0025833.1 MGP_C3HHeJ_G0017225.1 mouse_genomes_project 10 79792544 79801360 + MGP_C3HHeJ_P0025833 Misp protein_coding protein_coding MGP_C3HHeJ_T0025875.1 MGP_C3HHeJ_G0017232.1 mouse_genomes_project 10 79886382 79894287 - MGP_C3HHeJ_P0025875 R3hdm4 protein_coding protein_coding MGP_C3HHeJ_T0025876.1 MGP_C3HHeJ_G0017232.1 mouse_genomes_project 10 79887745 79894363 - MGP_C3HHeJ_P0025876 R3hdm4 protein_coding protein_coding MGP_C3HHeJ_T0025762.1 MGP_C3HHeJ_G0017198.1 mouse_genomes_project 10 78827617 78834755 + MGP_C3HHeJ_P0025762 Olfr1353 protein_coding protein_coding MGP_C3HHeJ_T0025763.1 MGP_C3HHeJ_G0017198.1 mouse_genomes_project 10 78827631 78834077 + MGP_C3HHeJ_P0025763 Olfr1353 protein_coding protein_coding MGP_C3HHeJ_T0025764.1 MGP_C3HHeJ_G0017198.1 mouse_genomes_project 10 78833740 78834755 + MGP_C3HHeJ_P0025764 Olfr1353 protein_coding protein_coding MGP_C3HHeJ_T0027315.1 MGP_C3HHeJ_G0017652.1 mouse_genomes_project 10 131266975 131272688 - MGP_C3HHeJ_P0027315 Bloc1s1 protein_coding protein_coding MGP_C3HHeJ_T0027318.1 MGP_C3HHeJ_G0017652.1 mouse_genomes_project 10 131269007 131272688 - MGP_C3HHeJ_P0027318 Bloc1s1 protein_coding protein_coding MGP_C3HHeJ_T0027319.1 MGP_C3HHeJ_G0017652.1 mouse_genomes_project 10 131269040 131273199 - MGP_C3HHeJ_P0027319 Bloc1s1 protein_coding protein_coding MGP_C3HHeJ_T0027320.1 MGP_C3HHeJ_G0017652.1 mouse_genomes_project 10 131269136 131272190 - Bloc1s1 protein_coding processed_transcript MGP_C3HHeJ_T0027321.1 MGP_C3HHeJ_G0017652.1 mouse_genomes_project 10 131271679 131272688 - Bloc1s1 protein_coding retained_intron MGP_C3HHeJ_T0009559.1 MGP_C3HHeJ_G0007692.1 mouse_genomes_project 10 130826766 130826829 - Mir6916 miRNA miRNA MGP_C3HHeJ_T0024528.1 MGP_C3HHeJ_G0016831.1 mouse_genomes_project 10 20952210 21197730 - MGP_C3HHeJ_P0024528 Eya4 protein_coding protein_coding MGP_C3HHeJ_T0024529.1 MGP_C3HHeJ_G0016831.1 mouse_genomes_project 10 20952805 21197722 - MGP_C3HHeJ_P0024529 Eya4 protein_coding protein_coding MGP_C3HHeJ_T0002952.1 MGP_C3HHeJ_G0002766.1 mouse_genomes_project 10 25373123 25380484 + 4930579H20Rik antisense antisense MGP_C3HHeJ_T0027091.1 MGP_C3HHeJ_G0017575.1 mouse_genomes_project 10 129399987 129414538 - MGP_C3HHeJ_P0027091 Pip4k2c protein_coding protein_coding MGP_C3HHeJ_T0024139.1 MGP_C3HHeJ_G0016731.1 mouse_genomes_project 10 16013 24871 + MGP_C3HHeJ_P0024139 9230019H11Rik protein_coding protein_coding MGP_C3HHeJ_T0025019.1 MGP_C3HHeJ_G0017014.1 mouse_genomes_project 10 58002035 58061746 - MGP_C3HHeJ_P0025019 Sept10 protein_coding protein_coding MGP_C3HHeJ_T0026429.1 MGP_C3HHeJ_G0017374.1 mouse_genomes_project 10 86484406 86950950 - MGP_C3HHeJ_P0026429 Syn3 protein_coding protein_coding MGP_C3HHeJ_T0026430.1 MGP_C3HHeJ_G0017374.1 mouse_genomes_project 10 86486704 86496109 - Syn3 protein_coding processed_transcript MGP_C3HHeJ_T0026431.1 MGP_C3HHeJ_G0017374.1 mouse_genomes_project 10 86499733 86943737 - Syn3 protein_coding retained_intron MGP_C3HHeJ_T0026432.1 MGP_C3HHeJ_G0017374.1 mouse_genomes_project 10 86724295 86950976 - MGP_C3HHeJ_P0026432 Syn3 protein_coding protein_coding MGP_C3HHeJ_T0026437.1 MGP_C3HHeJ_G0017374.1 mouse_genomes_project 10 86781526 86943737 - Syn3 protein_coding retained_intron MGP_C3HHeJ_T0026438.1 MGP_C3HHeJ_G0017374.1 mouse_genomes_project 10 86784899 86950990 - Syn3 protein_coding retained_intron MGP_C3HHeJ_T0006013.1 MGP_C3HHeJ_G0005024.1 mouse_genomes_project 10 32463363 32466359 - Gm26564 lincRNA lincRNA MGP_C3HHeJ_T0026681.1 MGP_C3HHeJ_G0017428.1 mouse_genomes_project 10 95045748 95050809 - MGP_C3HHeJ_P0026681 protein_coding protein_coding MGP_C3HHeJ_T0026682.1 MGP_C3HHeJ_G0017428.1 mouse_genomes_project 10 95049127 95050713 - protein_coding retained_intron MGP_C3HHeJ_T0024966.1 MGP_C3HHeJ_G0016994.1 mouse_genomes_project 10 55042674 55260552 - MGP_C3HHeJ_P0024966 Tbc1d32 protein_coding protein_coding MGP_C3HHeJ_T0027392.1 MGP_C3HHeJ_G0017702.1 mouse_genomes_project 10 132692982 132694040 - MGP_C3HHeJ_P0027392 Olfr827 protein_coding protein_coding MGP_C3HHeJ_T0025586.1 MGP_C3HHeJ_G0017145.1 mouse_genomes_project 10 76136515 76192324 + MGP_C3HHeJ_P0025586 Mcm3ap protein_coding protein_coding MGP_C3HHeJ_T0026610.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93487873 93621949 - MGP_C3HHeJ_P0026610 Cfap54 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026611.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93487881 93793826 - MGP_C3HHeJ_P0026611 Cfap54 protein_coding protein_coding MGP_C3HHeJ_T0026612.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93509990 93550540 - MGP_C3HHeJ_P0026612 Cfap54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026613.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93612311 93650683 - Cfap54 protein_coding processed_transcript MGP_C3HHeJ_T0026614.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93622785 93793804 - MGP_C3HHeJ_P0026614 Cfap54 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026615.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93622785 93758353 - MGP_C3HHeJ_P0026615 Cfap54 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026616.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93627312 93650691 - MGP_C3HHeJ_P0026616 Cfap54 protein_coding protein_coding MGP_C3HHeJ_T0026617.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93685136 93753851 - MGP_C3HHeJ_P0026617 Cfap54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026618.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93739782 93743165 - Cfap54 protein_coding processed_transcript MGP_C3HHeJ_T0026619.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93747478 93793826 - MGP_C3HHeJ_P0026619 Cfap54 protein_coding protein_coding MGP_C3HHeJ_T0026620.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93754446 93793804 - MGP_C3HHeJ_P0026620 Cfap54 protein_coding protein_coding MGP_C3HHeJ_T0026621.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93774669 93793826 - Cfap54 protein_coding retained_intron MGP_C3HHeJ_T0026622.1 MGP_C3HHeJ_G0017412.1 mouse_genomes_project 10 93780255 93783748 - Cfap54 protein_coding processed_transcript MGP_C3HHeJ_T0099936.1 MGP_C3HHeJ_G0038130.1 mouse_genomes_project 10 35018130 35018277 - Gm22554 snoRNA snoRNA MGP_C3HHeJ_T0009496.1 MGP_C3HHeJ_G0007629.1 mouse_genomes_project 10 57797278 57797482 + Gm27672 miRNA miRNA MGP_C3HHeJ_T0025898.1 MGP_C3HHeJ_G0017241.1 mouse_genomes_project 10 79997461 80014477 + MGP_C3HHeJ_P0025898 Hmha1 protein_coding protein_coding MGP_C3HHeJ_T0025899.1 MGP_C3HHeJ_G0017241.1 mouse_genomes_project 10 79997547 80014474 + Hmha1 protein_coding retained_intron MGP_C3HHeJ_T0025900.1 MGP_C3HHeJ_G0017241.1 mouse_genomes_project 10 79997724 80014474 + MGP_C3HHeJ_P0025900 Hmha1 protein_coding protein_coding MGP_C3HHeJ_T0025901.1 MGP_C3HHeJ_G0017241.1 mouse_genomes_project 10 80002579 80014473 + MGP_C3HHeJ_P0025901 Hmha1 protein_coding protein_coding MGP_C3HHeJ_T0025902.1 MGP_C3HHeJ_G0017241.1 mouse_genomes_project 10 80004713 80014467 + Hmha1 protein_coding retained_intron MGP_C3HHeJ_T0025137.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60690903 60717874 + MGP_C3HHeJ_P0025137 Aifm2 protein_coding protein_coding MGP_C3HHeJ_T0025138.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60690926 60707142 + Aifm2 protein_coding retained_intron MGP_C3HHeJ_T0025139.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60690950 60718481 + MGP_C3HHeJ_P0025139 Aifm2 protein_coding protein_coding MGP_C3HHeJ_T0025140.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60690962 60717868 + MGP_C3HHeJ_P0025140 Aifm2 protein_coding protein_coding MGP_C3HHeJ_T0025141.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60690971 60691875 + Aifm2 protein_coding processed_transcript MGP_C3HHeJ_T0025142.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60698883 60717874 + MGP_C3HHeJ_P0025142 Aifm2 protein_coding protein_coding MGP_C3HHeJ_T0025143.1 MGP_C3HHeJ_G0017048.1 mouse_genomes_project 10 60707368 60713791 + Aifm2 protein_coding retained_intron MGP_C3HHeJ_T0000049.1 MGP_C3HHeJ_G0000039.1 mouse_genomes_project 10 42789693 42790154 - MGP_C3HHeJ_P0000049 Gm17472 IG_LV_gene IG_LV_gene MGP_C3HHeJ_T0098694.1 MGP_C3HHeJ_G0036888.1 mouse_genomes_project 10 14692616 14692713 + Gm25382 snRNA snRNA MGP_C3HHeJ_T0000793.1 MGP_C3HHeJ_G0000735.1 mouse_genomes_project 10 84396873 84397343 + TEC TEC MGP_C3HHeJ_T0006001.1 MGP_C3HHeJ_G0005015.1 mouse_genomes_project 10 11395592 11437893 - Gm26835 lincRNA lincRNA MGP_C3HHeJ_T0098688.1 MGP_C3HHeJ_G0036882.1 mouse_genomes_project 10 2400263 2400371 + Gm23573 snRNA snRNA MGP_C3HHeJ_T0009562.1 MGP_C3HHeJ_G0007695.1 mouse_genomes_project 10 131974223 131974333 - Gm23252 miRNA miRNA MGP_C3HHeJ_T0009497.1 MGP_C3HHeJ_G0007630.1 mouse_genomes_project 10 59015050 59015108 + Mir6906 miRNA miRNA MGP_C3HHeJ_T0025625.1 MGP_C3HHeJ_G0017154.1 mouse_genomes_project 10 76736904 76860108 - MGP_C3HHeJ_P0025625 Col18a1 protein_coding protein_coding MGP_C3HHeJ_T0025626.1 MGP_C3HHeJ_G0017154.1 mouse_genomes_project 10 76736907 76804672 - MGP_C3HHeJ_P0025626 Col18a1 protein_coding protein_coding MGP_C3HHeJ_T0025627.1 MGP_C3HHeJ_G0017154.1 mouse_genomes_project 10 76737742 76804701 - MGP_C3HHeJ_P0025627 Col18a1 protein_coding protein_coding MGP_C3HHeJ_T0025628.1 MGP_C3HHeJ_G0017154.1 mouse_genomes_project 10 76768437 76778094 - MGP_C3HHeJ_P0025628 Col18a1 protein_coding protein_coding MGP_C3HHeJ_T0025629.1 MGP_C3HHeJ_G0017154.1 mouse_genomes_project 10 76785013 76804942 - MGP_C3HHeJ_P0025629 Col18a1 protein_coding protein_coding MGP_C3HHeJ_T0024233.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4036278 4164179 - MGP_C3HHeJ_P0024233 Ipcef1 protein_coding protein_coding MGP_C3HHeJ_T0024234.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4040897 4137930 - MGP_C3HHeJ_P0024234 Ipcef1 protein_coding protein_coding MGP_C3HHeJ_T0024235.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4061777 4213690 - MGP_C3HHeJ_P0024235 Ipcef1 protein_coding protein_coding MGP_C3HHeJ_T0024236.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4061777 4183884 - MGP_C3HHeJ_P0024236 Ipcef1 protein_coding protein_coding MGP_C3HHeJ_T0024237.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4067719 4138535 - Ipcef1 protein_coding processed_transcript MGP_C3HHeJ_T0024238.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4067719 4138686 - Ipcef1 protein_coding processed_transcript MGP_C3HHeJ_T0024239.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4069987 4183866 - MGP_C3HHeJ_P0024239 Ipcef1 protein_coding protein_coding MGP_C3HHeJ_T0024240.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4070067 4138755 - Ipcef1 protein_coding processed_transcript MGP_C3HHeJ_T0024241.1 MGP_C3HHeJ_G0016752.1 mouse_genomes_project 10 4105479 4161260 - MGP_C3HHeJ_P0024241 Ipcef1 protein_coding protein_coding MGP_C3HHeJ_T0027331.1 MGP_C3HHeJ_G0017659.1 mouse_genomes_project 10 131570548 131575723 - MGP_C3HHeJ_P0027331 Olfr772 protein_coding protein_coding MGP_C3HHeJ_T0003027.1 MGP_C3HHeJ_G0002822.1 mouse_genomes_project 10 121392410 121417696 - Grip1os3 antisense antisense MGP_C3HHeJ_T0003028.1 MGP_C3HHeJ_G0002822.1 mouse_genomes_project 10 121401673 121417646 - Grip1os3 antisense antisense MGP_C3HHeJ_T0003029.1 MGP_C3HHeJ_G0002822.1 mouse_genomes_project 10 121401673 121418245 - Grip1os3 antisense antisense MGP_C3HHeJ_T0003015.1 MGP_C3HHeJ_G0002815.1 mouse_genomes_project 10 95333628 95381786 - Tmcc3os antisense antisense MGP_C3HHeJ_T0025126.1 MGP_C3HHeJ_G0017040.1 mouse_genomes_project 10 60383689 60391021 + MGP_C3HHeJ_P0025126 Nodal protein_coding protein_coding MGP_C3HHeJ_T0025124.1 MGP_C3HHeJ_G0017038.1 mouse_genomes_project 10 60251938 60259205 + MGP_C3HHeJ_P0025124 Prf1 protein_coding protein_coding MGP_C3HHeJ_T0099922.1 MGP_C3HHeJ_G0038116.1 mouse_genomes_project 10 8678100 8678238 - Gm25979 snoRNA snoRNA MGP_C3HHeJ_T0024536.1 MGP_C3HHeJ_G0016834.1 mouse_genomes_project 10 21703492 21715877 + MGP_C3HHeJ_P0024536 Vnn3 protein_coding protein_coding MGP_C3HHeJ_T0027381.1 MGP_C3HHeJ_G0017693.1 mouse_genomes_project 10 132376099 132377056 - MGP_C3HHeJ_P0027381 Olfr818 protein_coding protein_coding MGP_C3HHeJ_T0027382.1 MGP_C3HHeJ_G0017693.1 mouse_genomes_project 10 132376341 132380096 - MGP_C3HHeJ_P0027382 Olfr818 protein_coding protein_coding MGP_C3HHeJ_T0026419.1 MGP_C3HHeJ_G0017371.1 mouse_genomes_project 10 86368232 86387124 - MGP_C3HHeJ_P0026419 Rtcb protein_coding protein_coding MGP_C3HHeJ_T0026420.1 MGP_C3HHeJ_G0017371.1 mouse_genomes_project 10 86378437 86385440 - Rtcb protein_coding retained_intron MGP_C3HHeJ_T0026944.1 MGP_C3HHeJ_G0017529.1 mouse_genomes_project 10 120017094 120044657 + MGP_C3HHeJ_P0026944 Mdm1 protein_coding protein_coding MGP_C3HHeJ_T0026945.1 MGP_C3HHeJ_G0017529.1 mouse_genomes_project 10 120017094 120044657 + MGP_C3HHeJ_P0026945 Mdm1 protein_coding protein_coding MGP_C3HHeJ_T0026946.1 MGP_C3HHeJ_G0017529.1 mouse_genomes_project 10 120017094 120044657 + MGP_C3HHeJ_P0026946 Mdm1 protein_coding protein_coding MGP_C3HHeJ_T0026947.1 MGP_C3HHeJ_G0017529.1 mouse_genomes_project 10 120017094 120044657 + MGP_C3HHeJ_P0026947 Mdm1 protein_coding protein_coding MGP_C3HHeJ_T0099947.1 MGP_C3HHeJ_G0038141.1 mouse_genomes_project 10 57523711 57523787 - Gm25055 snoRNA snoRNA MGP_C3HHeJ_T0026245.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81570435 81580579 - MGP_C3HHeJ_P0026245 Ncln protein_coding protein_coding MGP_C3HHeJ_T0026246.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81570643 81580513 - MGP_C3HHeJ_P0026246 Ncln protein_coding protein_coding MGP_C3HHeJ_T0026247.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81571284 81572584 - Ncln protein_coding retained_intron MGP_C3HHeJ_T0026248.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81571476 81572404 - MGP_C3HHeJ_P0026248 Ncln protein_coding protein_coding MGP_C3HHeJ_T0026249.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81571526 81572830 - Ncln protein_coding retained_intron MGP_C3HHeJ_T0026250.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81571566 81572828 - Ncln protein_coding retained_intron MGP_C3HHeJ_T0026251.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81572412 81574455 - Ncln protein_coding retained_intron MGP_C3HHeJ_T0026252.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81575111 81576242 - Ncln protein_coding retained_intron MGP_C3HHeJ_T0026253.1 MGP_C3HHeJ_G0017324.1 mouse_genomes_project 10 81577509 81580529 - Ncln protein_coding retained_intron MGP_C3HHeJ_T0011177.1 MGP_C3HHeJ_G0009310.1 mouse_genomes_project 10 49651331 49651621 - Gm23883 misc_RNA misc_RNA MGP_C3HHeJ_T0026449.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87300191 87474265 - MGP_C3HHeJ_P0026449 protein_coding protein_coding MGP_C3HHeJ_T0026450.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87300314 87356768 - MGP_C3HHeJ_P0026450 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026451.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87330480 87338845 - protein_coding retained_intron MGP_C3HHeJ_T0026452.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87332449 87350913 - protein_coding retained_intron MGP_C3HHeJ_T0026453.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87383741 87405662 - protein_coding processed_transcript MGP_C3HHeJ_T0026454.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87456036 87474252 - protein_coding processed_transcript MGP_C3HHeJ_T0026455.1 MGP_C3HHeJ_G0017381.1 mouse_genomes_project 10 87457721 87474262 - protein_coding processed_transcript MGP_C3HHeJ_T0024548.1 MGP_C3HHeJ_G0016846.1 mouse_genomes_project 10 21958944 21960120 - MGP_C3HHeJ_P0024548 Taar8b protein_coding protein_coding MGP_C3HHeJ_T0009498.1 MGP_C3HHeJ_G0007631.1 mouse_genomes_project 10 59114081 59114148 - Gm22117 miRNA miRNA MGP_C3HHeJ_T0098704.1 MGP_C3HHeJ_G0036898.1 mouse_genomes_project 10 43212238 43212326 - Gm22087 snRNA snRNA MGP_C3HHeJ_T0016878.1 MGP_C3HHeJ_G0014893.1 mouse_genomes_project 10 35407109 35411946 + 5930403N24Rik processed_transcript retained_intron MGP_C3HHeJ_T0016879.1 MGP_C3HHeJ_G0014893.1 mouse_genomes_project 10 35407265 35410259 + 5930403N24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016880.1 MGP_C3HHeJ_G0014893.1 mouse_genomes_project 10 35407621 35419873 + 5930403N24Rik processed_transcript lincRNA MGP_C3HHeJ_T0003003.1 MGP_C3HHeJ_G0002806.1 mouse_genomes_project 10 86449721 86451610 - A230060F14Rik antisense antisense MGP_C3HHeJ_T0003004.1 MGP_C3HHeJ_G0002806.1 mouse_genomes_project 10 86451060 86451606 - A230060F14Rik antisense antisense MGP_C3HHeJ_T0026908.1 MGP_C3HHeJ_G0017513.1 mouse_genomes_project 10 118719800 118735681 - MGP_C3HHeJ_P0026908 Gm10271 protein_coding protein_coding MGP_C3HHeJ_T0025413.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70780579 70819358 + MGP_C3HHeJ_P0025413 Ipmk protein_coding protein_coding MGP_C3HHeJ_T0025414.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70780652 70815473 + MGP_C3HHeJ_P0025414 Ipmk protein_coding protein_coding MGP_C3HHeJ_T0025415.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70780652 70815712 + MGP_C3HHeJ_P0025415 Ipmk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025416.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70780652 70810895 + MGP_C3HHeJ_P0025416 Ipmk protein_coding protein_coding MGP_C3HHeJ_T0025417.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70780659 70796644 + Ipmk protein_coding retained_intron MGP_C3HHeJ_T0025418.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70815221 70869187 + MGP_C3HHeJ_P0025418 Ipmk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025419.1 MGP_C3HHeJ_G0017106.1 mouse_genomes_project 10 70842485 70869334 + Ipmk protein_coding processed_transcript MGP_C3HHeJ_T0025778.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79497034 79511876 - MGP_C3HHeJ_P0025778 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025779.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79497034 79511984 - MGP_C3HHeJ_P0025779 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025780.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79497035 79498750 - MGP_C3HHeJ_P0025780 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025781.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79497710 79498955 - Mier2 protein_coding retained_intron MGP_C3HHeJ_T0025782.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79498457 79501560 - Mier2 protein_coding retained_intron MGP_C3HHeJ_T0025783.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79499256 79501142 - Mier2 protein_coding processed_transcript MGP_C3HHeJ_T0025784.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79505591 79511899 - MGP_C3HHeJ_P0025784 Mier2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025785.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79505663 79511669 - MGP_C3HHeJ_P0025785 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025786.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79505670 79511906 - MGP_C3HHeJ_P0025786 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025787.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79505695 79507599 - MGP_C3HHeJ_P0025787 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025788.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79506347 79511862 - MGP_C3HHeJ_P0025788 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025789.1 MGP_C3HHeJ_G0017208.1 mouse_genomes_project 10 79506425 79511390 - MGP_C3HHeJ_P0025789 Mier2 protein_coding protein_coding MGP_C3HHeJ_T0025750.1 MGP_C3HHeJ_G0017190.1 mouse_genomes_project 10 78471959 78482283 - MGP_C3HHeJ_P0025750 Olfr1357 protein_coding protein_coding MGP_C3HHeJ_T0025751.1 MGP_C3HHeJ_G0017190.1 mouse_genomes_project 10 78471959 78472971 - MGP_C3HHeJ_P0025751 Olfr1357 protein_coding protein_coding MGP_C3HHeJ_T0025752.1 MGP_C3HHeJ_G0017190.1 mouse_genomes_project 10 78472223 78482283 - MGP_C3HHeJ_P0025752 Olfr1357 protein_coding protein_coding MGP_C3HHeJ_T0026725.1 MGP_C3HHeJ_G0017450.1 mouse_genomes_project 10 100076997 100082086 + MGP_C3HHeJ_P0026725 Galnt4 protein_coding protein_coding MGP_C3HHeJ_T0024493.1 MGP_C3HHeJ_G0016819.1 mouse_genomes_project 10 18837656 18878277 - MGP_C3HHeJ_P0024493 Myb protein_coding protein_coding MGP_C3HHeJ_T0024494.1 MGP_C3HHeJ_G0016819.1 mouse_genomes_project 10 18837996 18878277 - MGP_C3HHeJ_P0024494 Myb protein_coding protein_coding MGP_C3HHeJ_T0024495.1 MGP_C3HHeJ_G0016819.1 mouse_genomes_project 10 18853694 18878222 - Myb protein_coding retained_intron MGP_C3HHeJ_T0027258.1 MGP_C3HHeJ_G0017627.1 mouse_genomes_project 10 130724890 130753942 + MGP_C3HHeJ_P0027258 Rnf41 protein_coding protein_coding MGP_C3HHeJ_T0027259.1 MGP_C3HHeJ_G0017627.1 mouse_genomes_project 10 130724890 130753942 + MGP_C3HHeJ_P0027259 Rnf41 protein_coding protein_coding MGP_C3HHeJ_T0024368.1 MGP_C3HHeJ_G0016783.1 mouse_genomes_project 10 10899777 10901417 + MGP_C3HHeJ_P0024368 Fuca2 protein_coding protein_coding MGP_C3HHeJ_T0024369.1 MGP_C3HHeJ_G0016783.1 mouse_genomes_project 10 10899781 10906989 + MGP_C3HHeJ_P0024369 Fuca2 protein_coding protein_coding MGP_C3HHeJ_T0024370.1 MGP_C3HHeJ_G0016783.1 mouse_genomes_project 10 10901240 10916652 + MGP_C3HHeJ_P0024370 Fuca2 protein_coding protein_coding MGP_C3HHeJ_T0024371.1 MGP_C3HHeJ_G0016783.1 mouse_genomes_project 10 10901240 10920156 + MGP_C3HHeJ_P0024371 Fuca2 protein_coding protein_coding MGP_C3HHeJ_T0024372.1 MGP_C3HHeJ_G0016783.1 mouse_genomes_project 10 10901323 10914207 + Fuca2 protein_coding retained_intron MGP_C3HHeJ_T0024373.1 MGP_C3HHeJ_G0016783.1 mouse_genomes_project 10 10907145 10916607 + Fuca2 protein_coding processed_transcript MGP_C3HHeJ_T0009531.1 MGP_C3HHeJ_G0007664.1 mouse_genomes_project 10 94165605 94165661 + Mir7688 miRNA miRNA MGP_C3HHeJ_T0026730.1 MGP_C3HHeJ_G0017452.1 mouse_genomes_project 10 100241833 100246085 + MGP_C3HHeJ_P0026730 Dusp6 protein_coding protein_coding MGP_C3HHeJ_T0026393.1 MGP_C3HHeJ_G0017360.1 mouse_genomes_project 10 85283988 85384404 + MGP_C3HHeJ_P0026393 Ric8b protein_coding protein_coding MGP_C3HHeJ_T0026394.1 MGP_C3HHeJ_G0017360.1 mouse_genomes_project 10 85284028 85384404 + MGP_C3HHeJ_P0026394 Ric8b protein_coding protein_coding MGP_C3HHeJ_T0025821.1 MGP_C3HHeJ_G0017220.1 mouse_genomes_project 10 79723935 79725778 + MGP_C3HHeJ_P0025821 Fgf22 protein_coding protein_coding MGP_C3HHeJ_T0027112.1 MGP_C3HHeJ_G0017583.1 mouse_genomes_project 10 129568555 129570923 - MGP_C3HHeJ_P0027112 Inhbe protein_coding protein_coding MGP_C3HHeJ_T0009529.1 MGP_C3HHeJ_G0007662.1 mouse_genomes_project 10 92822835 92822919 - Mir1251 miRNA miRNA MGP_C3HHeJ_T0024749.1 MGP_C3HHeJ_G0016919.1 mouse_genomes_project 10 38393506 38502942 - MGP_C3HHeJ_P0024749 Slc16a10 protein_coding protein_coding MGP_C3HHeJ_T0009509.1 MGP_C3HHeJ_G0007642.1 mouse_genomes_project 10 78260558 78260629 - Mir6907 miRNA miRNA MGP_C3HHeJ_T0098738.1 MGP_C3HHeJ_G0036932.1 mouse_genomes_project 10 105637665 105637822 - Gm22945 snRNA snRNA MGP_C3HHeJ_T0024939.1 MGP_C3HHeJ_G0016983.1 mouse_genomes_project 10 51205740 51205827 + MGP_C3HHeJ_P0024939 Gm26741 protein_coding protein_coding MGP_C3HHeJ_T0098723.1 MGP_C3HHeJ_G0036917.1 mouse_genomes_project 10 79965266 79965373 + Gm26243 snRNA snRNA MGP_C3HHeJ_T0098725.1 MGP_C3HHeJ_G0036919.1 mouse_genomes_project 10 83433670 83433773 - Gm23122 snRNA snRNA MGP_C3HHeJ_T0026848.1 MGP_C3HHeJ_G0017493.1 mouse_genomes_project 10 113818326 114009244 + MGP_C3HHeJ_P0026848 Kcnc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025074.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59205745 59568409 - MGP_C3HHeJ_P0025074 Cdh23 protein_coding protein_coding MGP_C3HHeJ_T0025075.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59205745 59568409 - MGP_C3HHeJ_P0025075 Cdh23 protein_coding protein_coding MGP_C3HHeJ_T0025076.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59205747 59607454 - MGP_C3HHeJ_P0025076 Cdh23 protein_coding protein_coding MGP_C3HHeJ_T0025077.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59205747 59607454 - MGP_C3HHeJ_P0025077 Cdh23 protein_coding protein_coding MGP_C3HHeJ_T0025078.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59205747 59607454 - MGP_C3HHeJ_P0025078 Cdh23 protein_coding protein_coding MGP_C3HHeJ_T0025079.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59206282 59224559 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0025080.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59206282 59224559 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0025081.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59206307 59568409 - Cdh23 protein_coding retained_intron MGP_C3HHeJ_T0025082.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59206307 59568409 - Cdh23 protein_coding retained_intron MGP_C3HHeJ_T0025083.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59206360 59208658 - Cdh23 protein_coding retained_intron MGP_C3HHeJ_T0025090.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59279872 59291458 - Cdh23 protein_coding retained_intron MGP_C3HHeJ_T0025091.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59281194 59310856 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0025092.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59281288 59284615 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0025094.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59493573 59607454 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0025095.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59539563 59564109 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0025096.1 MGP_C3HHeJ_G0017029.1 mouse_genomes_project 10 59568341 59598221 - Cdh23 protein_coding processed_transcript MGP_C3HHeJ_T0026541.1 MGP_C3HHeJ_G0017402.1 mouse_genomes_project 10 90160554 90208944 - MGP_C3HHeJ_P0026541 Slc17a8 protein_coding protein_coding MGP_C3HHeJ_T0025759.1 MGP_C3HHeJ_G0017196.1 mouse_genomes_project 10 78730490 78735159 + MGP_C3HHeJ_P0025759 protein_coding protein_coding MGP_C3HHeJ_T0024765.1 MGP_C3HHeJ_G0016927.1 mouse_genomes_project 10 39226819 39282052 - MGP_C3HHeJ_P0024765 Cdc40 protein_coding protein_coding MGP_C3HHeJ_T0024669.1 MGP_C3HHeJ_G0016891.1 mouse_genomes_project 10 32142410 32142476 - MGP_C3HHeJ_P0024669 Gm17567 protein_coding protein_coding MGP_C3HHeJ_T0027330.1 MGP_C3HHeJ_G0017658.1 mouse_genomes_project 10 131550430 131551384 - MGP_C3HHeJ_P0027330 Olfr771 protein_coding protein_coding MGP_C3HHeJ_T0025631.1 MGP_C3HHeJ_G0017156.1 mouse_genomes_project 10 76961657 76971944 + MGP_C3HHeJ_P0025631 Pofut2 protein_coding protein_coding MGP_C3HHeJ_T0009514.1 MGP_C3HHeJ_G0007647.1 mouse_genomes_project 10 79834615 79834681 + Mir6910 miRNA miRNA MGP_C3HHeJ_T0027218.1 MGP_C3HHeJ_G0017614.1 mouse_genomes_project 10 130518996 130525005 + MGP_C3HHeJ_P0027218 Mip protein_coding protein_coding MGP_C3HHeJ_T0024172.1 MGP_C3HHeJ_G0016741.1 mouse_genomes_project 10 1496077 1580787 + MGP_C3HHeJ_P0024172 Ccdc170 protein_coding protein_coding MGP_C3HHeJ_T0024173.1 MGP_C3HHeJ_G0016741.1 mouse_genomes_project 10 1525349 1580787 + MGP_C3HHeJ_P0024173 Ccdc170 protein_coding protein_coding MGP_C3HHeJ_T0024174.1 MGP_C3HHeJ_G0016741.1 mouse_genomes_project 10 1528183 1530957 + MGP_C3HHeJ_P0024174 Ccdc170 protein_coding protein_coding MGP_C3HHeJ_T0024175.1 MGP_C3HHeJ_G0016741.1 mouse_genomes_project 10 1552723 1561421 + Ccdc170 protein_coding processed_transcript MGP_C3HHeJ_T0024289.1 MGP_C3HHeJ_G0016765.1 mouse_genomes_project 10 5965471 6141947 - MGP_C3HHeJ_P0024289 Sash1 protein_coding protein_coding MGP_C3HHeJ_T0099917.1 MGP_C3HHeJ_G0038111.1 mouse_genomes_project 10 1155485 1155617 + Gm25369 snoRNA snoRNA MGP_C3HHeJ_T0026318.1 MGP_C3HHeJ_G0017338.1 mouse_genomes_project 10 82386094 82403867 - MGP_C3HHeJ_P0026318 Zfp938 protein_coding protein_coding MGP_C3HHeJ_T0026319.1 MGP_C3HHeJ_G0017338.1 mouse_genomes_project 10 82386098 82403874 - MGP_C3HHeJ_P0026319 Zfp938 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012319.1 MGP_C3HHeJ_G0010423.1 mouse_genomes_project 10 75197339 75197763 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025651.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77296055 77312925 + MGP_C3HHeJ_P0025651 Pttg1ip protein_coding protein_coding MGP_C3HHeJ_T0025652.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77296091 77301622 + Pttg1ip protein_coding retained_intron MGP_C3HHeJ_T0025653.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77296093 77308092 + MGP_C3HHeJ_P0025653 Pttg1ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025654.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77296138 77311528 + MGP_C3HHeJ_P0025654 Pttg1ip protein_coding protein_coding MGP_C3HHeJ_T0025655.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77296157 77307104 + MGP_C3HHeJ_P0025655 Pttg1ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025656.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77296744 77311462 + MGP_C3HHeJ_P0025656 Pttg1ip protein_coding protein_coding MGP_C3HHeJ_T0025657.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77298280 77307192 + MGP_C3HHeJ_P0025657 Pttg1ip protein_coding protein_coding MGP_C3HHeJ_T0025658.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77303586 77311425 + Pttg1ip protein_coding retained_intron MGP_C3HHeJ_T0025659.1 MGP_C3HHeJ_G0017160.1 mouse_genomes_project 10 77306529 77311323 + Pttg1ip protein_coding retained_intron MGP_C3HHeJ_T0026846.1 MGP_C3HHeJ_G0017492.1 mouse_genomes_project 10 113582201 113607685 + MGP_C3HHeJ_P0026846 Glipr1l2 protein_coding protein_coding MGP_C3HHeJ_T0026847.1 MGP_C3HHeJ_G0017492.1 mouse_genomes_project 10 113582201 113608472 + MGP_C3HHeJ_P0026847 Glipr1l2 protein_coding protein_coding MGP_C3HHeJ_T0005992.1 MGP_C3HHeJ_G0005008.1 mouse_genomes_project 10 298123 301186 - Gm26752 lincRNA lincRNA MGP_C3HHeJ_T0024764.1 MGP_C3HHeJ_G0016926.1 mouse_genomes_project 10 39072143 39206858 + MGP_C3HHeJ_P0024764 Mettl24 protein_coding protein_coding MGP_C3HHeJ_T0097835.1 MGP_C3HHeJ_G0036047.1 mouse_genomes_project 10 57629978 57630547 - pseudogene pseudogene MGP_C3HHeJ_T0011180.1 MGP_C3HHeJ_G0009313.1 mouse_genomes_project 10 75009636 75009959 + Gm25545 misc_RNA misc_RNA MGP_C3HHeJ_T0025136.1 MGP_C3HHeJ_G0017047.1 mouse_genomes_project 10 60671553 60678931 + MGP_C3HHeJ_P0025136 Tysnd1 protein_coding protein_coding MGP_C3HHeJ_T0002994.1 MGP_C3HHeJ_G0002799.1 mouse_genomes_project 10 81259649 81263480 + Atcayos antisense antisense MGP_C3HHeJ_T0002995.1 MGP_C3HHeJ_G0002799.1 mouse_genomes_project 10 81259731 81277991 + Atcayos antisense antisense MGP_C3HHeJ_T0027304.1 MGP_C3HHeJ_G0017646.1 mouse_genomes_project 10 131147300 131160481 + MGP_C3HHeJ_P0027304 Dnajc14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009490.1 MGP_C3HHeJ_G0007623.1 mouse_genomes_project 10 40116135 40116190 + Mir3473b miRNA miRNA MGP_C3HHeJ_T0024499.1 MGP_C3HHeJ_G0016822.1 mouse_genomes_project 10 19097690 19116964 + MGP_C3HHeJ_P0024499 Aldh8a1 protein_coding protein_coding MGP_C3HHeJ_T0024500.1 MGP_C3HHeJ_G0016822.1 mouse_genomes_project 10 19097699 19105934 + Aldh8a1 protein_coding retained_intron MGP_C3HHeJ_T0024501.1 MGP_C3HHeJ_G0016822.1 mouse_genomes_project 10 19097746 19109384 + MGP_C3HHeJ_P0024501 Aldh8a1 protein_coding protein_coding MGP_C3HHeJ_T0027093.1 MGP_C3HHeJ_G0017577.1 mouse_genomes_project 10 129477944 129494513 + MGP_C3HHeJ_P0027093 Dctn2 protein_coding protein_coding MGP_C3HHeJ_T0024311.1 MGP_C3HHeJ_G0016772.1 mouse_genomes_project 10 8017957 8422530 - MGP_C3HHeJ_P0024311 Grm1 protein_coding protein_coding MGP_C3HHeJ_T0024312.1 MGP_C3HHeJ_G0016772.1 mouse_genomes_project 10 8020486 8422479 - MGP_C3HHeJ_P0024312 Grm1 protein_coding protein_coding MGP_C3HHeJ_T0024313.1 MGP_C3HHeJ_G0016772.1 mouse_genomes_project 10 8020704 8421142 - MGP_C3HHeJ_P0024313 Grm1 protein_coding protein_coding MGP_C3HHeJ_T0024314.1 MGP_C3HHeJ_G0016772.1 mouse_genomes_project 10 8021346 8050738 - Grm1 protein_coding processed_transcript MGP_C3HHeJ_T0024315.1 MGP_C3HHeJ_G0016772.1 mouse_genomes_project 10 8079379 8082006 - Grm1 protein_coding processed_transcript MGP_C3HHeJ_T0024316.1 MGP_C3HHeJ_G0016772.1 mouse_genomes_project 10 8420674 8422424 - Grm1 protein_coding processed_transcript MGP_C3HHeJ_T0024811.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40167781 40268569 - MGP_C3HHeJ_P0024811 Cep57l1 protein_coding protein_coding MGP_C3HHeJ_T0024812.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40167786 40268563 - MGP_C3HHeJ_P0024812 Cep57l1 protein_coding protein_coding MGP_C3HHeJ_T0024813.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40167786 40268563 - MGP_C3HHeJ_P0024813 Cep57l1 protein_coding protein_coding MGP_C3HHeJ_T0024814.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40168635 40268603 - MGP_C3HHeJ_P0024814 Cep57l1 protein_coding protein_coding MGP_C3HHeJ_T0024815.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40168787 40268578 - MGP_C3HHeJ_P0024815 Cep57l1 protein_coding protein_coding MGP_C3HHeJ_T0024816.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40170113 40171852 - MGP_C3HHeJ_P0024816 Cep57l1 protein_coding protein_coding MGP_C3HHeJ_T0024817.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40174503 40177889 - Cep57l1 protein_coding retained_intron MGP_C3HHeJ_T0024818.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40177464 40197868 - Cep57l1 protein_coding retained_intron MGP_C3HHeJ_T0024819.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40193931 40268568 - Cep57l1 protein_coding retained_intron MGP_C3HHeJ_T0024820.1 MGP_C3HHeJ_G0016940.1 mouse_genomes_project 10 40195969 40268586 - Cep57l1 protein_coding retained_intron MGP_C3HHeJ_T0101114.1 MGP_C3HHeJ_G0039291.1 mouse_genomes_project 10 119435248 119437825 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101115.1 MGP_C3HHeJ_G0039291.1 mouse_genomes_project 10 119435621 119437231 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0024437.1 MGP_C3HHeJ_G0016800.1 mouse_genomes_project 10 16187830 16193663 - MGP_C3HHeJ_P0024437 Hebp2 protein_coding protein_coding MGP_C3HHeJ_T0002982.1 MGP_C3HHeJ_G0002789.1 mouse_genomes_project 10 75710541 75713216 + Gm16222 antisense antisense MGP_C3HHeJ_T0027003.1 MGP_C3HHeJ_G0017545.1 mouse_genomes_project 10 123490043 123558594 - MGP_C3HHeJ_P0027003 Rassf3 protein_coding protein_coding MGP_C3HHeJ_T0026989.1 MGP_C3HHeJ_G0017538.1 mouse_genomes_project 10 122369428 122488624 - MGP_C3HHeJ_P0026989 Hmga2 protein_coding protein_coding MGP_C3HHeJ_T0026990.1 MGP_C3HHeJ_G0017538.1 mouse_genomes_project 10 122369428 122488624 - MGP_C3HHeJ_P0026990 Hmga2 protein_coding protein_coding MGP_C3HHeJ_T0026991.1 MGP_C3HHeJ_G0017538.1 mouse_genomes_project 10 122482444 122488447 - Hmga2 protein_coding retained_intron MGP_C3HHeJ_T0026076.1 MGP_C3HHeJ_G0017278.1 mouse_genomes_project 10 80727429 80730119 + MGP_C3HHeJ_P0026076 Izumo4 protein_coding protein_coding MGP_C3HHeJ_T0099921.1 MGP_C3HHeJ_G0038115.1 mouse_genomes_project 10 7992966 7993097 + Gm23601 snoRNA snoRNA MGP_C3HHeJ_T0027142.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129774258 129860842 - MGP_C3HHeJ_P0027142 Lrp1 protein_coding protein_coding MGP_C3HHeJ_T0027143.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129774696 129775695 - Lrp1 protein_coding retained_intron MGP_C3HHeJ_T0027144.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129775332 129776240 - Lrp1 protein_coding retained_intron MGP_C3HHeJ_T0027145.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129778290 129779303 - Lrp1 protein_coding retained_intron MGP_C3HHeJ_T0027146.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129782432 129785959 - MGP_C3HHeJ_P0027146 Lrp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027147.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129815219 129818774 - Lrp1 protein_coding retained_intron MGP_C3HHeJ_T0027148.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129818617 129820349 - MGP_C3HHeJ_P0027148 Lrp1 protein_coding protein_coding MGP_C3HHeJ_T0027149.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129825058 129860842 - Lrp1 protein_coding retained_intron MGP_C3HHeJ_T0027150.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129826611 129860668 - MGP_C3HHeJ_P0027150 Lrp1 protein_coding protein_coding MGP_C3HHeJ_T0027151.1 MGP_C3HHeJ_G0017590.1 mouse_genomes_project 10 129837303 129860620 - MGP_C3HHeJ_P0027151 Lrp1 protein_coding protein_coding MGP_C3HHeJ_T0000794.1 MGP_C3HHeJ_G0000736.1 mouse_genomes_project 10 87756076 87758424 + TEC TEC MGP_C3HHeJ_T0000795.1 MGP_C3HHeJ_G0000736.1 mouse_genomes_project 10 87757314 87757692 + TEC TEC MGP_C3HHeJ_T0026181.1 MGP_C3HHeJ_G0017310.1 mouse_genomes_project 10 81339388 81344461 + MGP_C3HHeJ_P0026181 Apba3 protein_coding protein_coding MGP_C3HHeJ_T0027345.1 MGP_C3HHeJ_G0017669.1 mouse_genomes_project 10 131803003 131813338 + MGP_C3HHeJ_P0027345 Olfr786 protein_coding protein_coding MGP_C3HHeJ_T0027346.1 MGP_C3HHeJ_G0017669.1 mouse_genomes_project 10 131812399 131813338 + MGP_C3HHeJ_P0027346 Olfr786 protein_coding protein_coding MGP_C3HHeJ_T0012340.1 MGP_C3HHeJ_G0010444.1 mouse_genomes_project 10 130171187 130171482 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027369.1 MGP_C3HHeJ_G0017685.1 mouse_genomes_project 10 132152721 132153718 - MGP_C3HHeJ_P0027369 Olfr807 protein_coding protein_coding MGP_C3HHeJ_T0024901.1 MGP_C3HHeJ_G0016969.1 mouse_genomes_project 10 43978177 44015409 + MGP_C3HHeJ_P0024901 Bves protein_coding protein_coding MGP_C3HHeJ_T0027301.1 MGP_C3HHeJ_G0017645.1 mouse_genomes_project 10 131141735 131146070 - MGP_C3HHeJ_P0027301 Tmem198b protein_coding protein_coding MGP_C3HHeJ_T0027302.1 MGP_C3HHeJ_G0017645.1 mouse_genomes_project 10 131141804 131145661 - MGP_C3HHeJ_P0027302 Tmem198b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027303.1 MGP_C3HHeJ_G0017645.1 mouse_genomes_project 10 131142540 131145417 - MGP_C3HHeJ_P0027303 Tmem198b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009547.1 MGP_C3HHeJ_G0007680.1 mouse_genomes_project 10 125101337 125101422 - Mirlet7i miRNA miRNA MGP_C3HHeJ_T0099961.1 MGP_C3HHeJ_G0038155.1 mouse_genomes_project 10 94656662 94656830 - Gm25962 snoRNA snoRNA MGP_C3HHeJ_T0098712.1 MGP_C3HHeJ_G0036906.1 mouse_genomes_project 10 53242193 53242300 - Gm26177 snRNA snRNA MGP_C3HHeJ_T0026877.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117740189 118001939 + MGP_C3HHeJ_P0026877 Ptprr protein_coding protein_coding MGP_C3HHeJ_T0026878.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117740263 117833724 + Ptprr protein_coding processed_transcript MGP_C3HHeJ_T0026880.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117863589 118001937 + MGP_C3HHeJ_P0026880 Ptprr protein_coding protein_coding MGP_C3HHeJ_T0026881.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117895202 118001939 + MGP_C3HHeJ_P0026881 Ptprr protein_coding protein_coding MGP_C3HHeJ_T0026882.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117895295 118001939 + MGP_C3HHeJ_P0026882 Ptprr protein_coding protein_coding MGP_C3HHeJ_T0026883.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117895355 118001352 + MGP_C3HHeJ_P0026883 Ptprr protein_coding protein_coding MGP_C3HHeJ_T0026884.1 MGP_C3HHeJ_G0017506.1 mouse_genomes_project 10 117914301 117957259 + Ptprr protein_coding processed_transcript MGP_C3HHeJ_T0024491.1 MGP_C3HHeJ_G0016818.1 mouse_genomes_project 10 18657474 18790600 + MGP_C3HHeJ_P0024491 Ahi1 protein_coding protein_coding MGP_C3HHeJ_T0024492.1 MGP_C3HHeJ_G0016818.1 mouse_genomes_project 10 18750245 18790600 + MGP_C3HHeJ_P0024492 Ahi1 protein_coding protein_coding MGP_C3HHeJ_T0024831.1 MGP_C3HHeJ_G0016943.1 mouse_genomes_project 10 40668964 40764415 - MGP_C3HHeJ_P0024831 Foxo3 protein_coding protein_coding MGP_C3HHeJ_T0024832.1 MGP_C3HHeJ_G0016943.1 mouse_genomes_project 10 40672909 40764405 - MGP_C3HHeJ_P0024832 Foxo3 protein_coding protein_coding MGP_C3HHeJ_T0024833.1 MGP_C3HHeJ_G0016943.1 mouse_genomes_project 10 40683391 40764359 - MGP_C3HHeJ_P0024833 Foxo3 protein_coding protein_coding MGP_C3HHeJ_T0024834.1 MGP_C3HHeJ_G0016943.1 mouse_genomes_project 10 40684689 40746040 - MGP_C3HHeJ_P0024834 Foxo3 protein_coding protein_coding MGP_C3HHeJ_T0024835.1 MGP_C3HHeJ_G0016943.1 mouse_genomes_project 10 40735102 40764418 - MGP_C3HHeJ_P0024835 Foxo3 protein_coding protein_coding MGP_C3HHeJ_T0025168.1 MGP_C3HHeJ_G0017055.1 mouse_genomes_project 10 61264946 61279534 + MGP_C3HHeJ_P0025168 Tacr2 protein_coding protein_coding MGP_C3HHeJ_T0009538.1 MGP_C3HHeJ_G0007671.1 mouse_genomes_project 10 105439377 105439485 + Mir6411 miRNA miRNA MGP_C3HHeJ_T0009522.1 MGP_C3HHeJ_G0007655.1 mouse_genomes_project 10 81467652 81467718 + Mir6913 miRNA miRNA MGP_C3HHeJ_T0025733.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78110513 78202714 - MGP_C3HHeJ_P0025733 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025734.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78112898 78202137 - MGP_C3HHeJ_P0025734 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025735.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78112898 78143908 - MGP_C3HHeJ_P0025735 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025736.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78112898 78202325 - MGP_C3HHeJ_P0025736 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025737.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78112898 78201972 - MGP_C3HHeJ_P0025737 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025738.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78114946 78141106 - MGP_C3HHeJ_P0025738 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025739.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78114949 78119772 - Agpat3 protein_coding retained_intron MGP_C3HHeJ_T0025740.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78125602 78169157 - MGP_C3HHeJ_P0025740 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025741.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78125648 78153260 - MGP_C3HHeJ_P0025741 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025742.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78129190 78202761 - MGP_C3HHeJ_P0025742 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025743.1 MGP_C3HHeJ_G0017183.1 mouse_genomes_project 10 78129201 78202484 - MGP_C3HHeJ_P0025743 Agpat3 protein_coding protein_coding MGP_C3HHeJ_T0025412.1 MGP_C3HHeJ_G0017105.1 mouse_genomes_project 10 70762883 70777770 - MGP_C3HHeJ_P0025412 Cisd1 protein_coding protein_coding MGP_C3HHeJ_T0027266.1 MGP_C3HHeJ_G0017631.1 mouse_genomes_project 10 130825047 130840636 - MGP_C3HHeJ_P0027266 Esyt1 protein_coding protein_coding MGP_C3HHeJ_T0027189.1 MGP_C3HHeJ_G0017607.1 mouse_genomes_project 10 130312521 130325543 + MGP_C3HHeJ_P0027189 Naca protein_coding protein_coding MGP_C3HHeJ_T0027190.1 MGP_C3HHeJ_G0017607.1 mouse_genomes_project 10 130312521 130325543 + MGP_C3HHeJ_P0027190 Naca protein_coding protein_coding MGP_C3HHeJ_T0003021.1 MGP_C3HHeJ_G0002818.1 mouse_genomes_project 10 116418074 116445432 + 4930473D10Rik antisense antisense MGP_C3HHeJ_T0003023.1 MGP_C3HHeJ_G0002820.1 mouse_genomes_project 10 118155182 118159661 + Kcnmb4os1 antisense antisense MGP_C3HHeJ_T0012299.1 MGP_C3HHeJ_G0010403.1 mouse_genomes_project 10 37755981 37756360 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002978.1 MGP_C3HHeJ_G0002785.1 mouse_genomes_project 10 69685690 69686404 - Gm7097 antisense antisense MGP_C3HHeJ_T0026046.1 MGP_C3HHeJ_G0017268.1 mouse_genomes_project 10 80528618 80551025 - MGP_C3HHeJ_P0026046 Atp8b3 protein_coding protein_coding MGP_C3HHeJ_T0002998.1 MGP_C3HHeJ_G0002802.1 mouse_genomes_project 10 81543718 81545532 + Gm16105 antisense antisense MGP_C3HHeJ_T0024264.1 MGP_C3HHeJ_G0016758.1 mouse_genomes_project 10 4880722 4919787 + MGP_C3HHeJ_P0024264 Lats1 protein_coding protein_coding MGP_C3HHeJ_T0024265.1 MGP_C3HHeJ_G0016758.1 mouse_genomes_project 10 4894549 4916885 + MGP_C3HHeJ_P0024265 Lats1 protein_coding protein_coding MGP_C3HHeJ_T0002973.1 MGP_C3HHeJ_G0002781.1 mouse_genomes_project 10 62064560 62066308 + antisense antisense MGP_C3HHeJ_T0024414.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15687820 15764077 + MGP_C3HHeJ_P0024414 Reps1 protein_coding protein_coding MGP_C3HHeJ_T0024415.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15687865 15764091 + MGP_C3HHeJ_P0024415 Reps1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024416.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15687871 15764089 + MGP_C3HHeJ_P0024416 Reps1 protein_coding protein_coding MGP_C3HHeJ_T0024417.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15687899 15764102 + MGP_C3HHeJ_P0024417 Reps1 protein_coding protein_coding MGP_C3HHeJ_T0024418.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15722774 15737381 + Reps1 protein_coding retained_intron MGP_C3HHeJ_T0024419.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15725588 15736542 + MGP_C3HHeJ_P0024419 Reps1 protein_coding protein_coding MGP_C3HHeJ_T0024420.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15726948 15750088 + MGP_C3HHeJ_P0024420 Reps1 protein_coding protein_coding MGP_C3HHeJ_T0024421.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15746836 15754583 + Reps1 protein_coding retained_intron MGP_C3HHeJ_T0024422.1 MGP_C3HHeJ_G0016796.1 mouse_genomes_project 10 15755325 15756251 + Reps1 protein_coding retained_intron MGP_C3HHeJ_T0026004.1 MGP_C3HHeJ_G0017260.1 mouse_genomes_project 10 80327531 80334020 + MGP_C3HHeJ_P0026004 Reep6 protein_coding protein_coding MGP_C3HHeJ_T0026005.1 MGP_C3HHeJ_G0017260.1 mouse_genomes_project 10 80327531 80334020 + MGP_C3HHeJ_P0026005 Reep6 protein_coding protein_coding MGP_C3HHeJ_T0026006.1 MGP_C3HHeJ_G0017260.1 mouse_genomes_project 10 80327723 80334019 + MGP_C3HHeJ_P0026006 Reep6 protein_coding protein_coding MGP_C3HHeJ_T0026007.1 MGP_C3HHeJ_G0017260.1 mouse_genomes_project 10 80327776 80332011 + Reep6 protein_coding retained_intron MGP_C3HHeJ_T0026008.1 MGP_C3HHeJ_G0017260.1 mouse_genomes_project 10 80327780 80333161 + MGP_C3HHeJ_P0026008 Reep6 protein_coding protein_coding MGP_C3HHeJ_T0098241.1 MGP_C3HHeJ_G0036453.1 mouse_genomes_project 10 41354381 41354686 - Gm26464 ribozyme ribozyme MGP_C3HHeJ_T0025990.1 MGP_C3HHeJ_G0017256.1 mouse_genomes_project 10 80287219 80288856 + MGP_C3HHeJ_P0025990 Rps15 protein_coding protein_coding MGP_C3HHeJ_T0006075.1 MGP_C3HHeJ_G0005065.1 mouse_genomes_project 10 107673764 107677589 - C230021G24Rik lincRNA lincRNA MGP_C3HHeJ_T0027307.1 MGP_C3HHeJ_G0017649.1 mouse_genomes_project 10 131226105 131237151 - MGP_C3HHeJ_P0027307 Gdf11 protein_coding protein_coding MGP_C3HHeJ_T0009524.1 MGP_C3HHeJ_G0007657.1 mouse_genomes_project 10 81591061 81591158 + Gm25595 miRNA miRNA MGP_C3HHeJ_T0025606.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76447855 76643437 - MGP_C3HHeJ_P0025606 Pcbp3 protein_coding protein_coding MGP_C3HHeJ_T0025607.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76447856 76509102 - Pcbp3 protein_coding processed_transcript MGP_C3HHeJ_T0025608.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76447856 76512174 - MGP_C3HHeJ_P0025608 Pcbp3 protein_coding protein_coding MGP_C3HHeJ_T0025609.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76447858 76643536 - MGP_C3HHeJ_P0025609 Pcbp3 protein_coding protein_coding MGP_C3HHeJ_T0025610.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76448230 76483851 - Pcbp3 protein_coding processed_transcript MGP_C3HHeJ_T0025611.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76448368 76474409 - MGP_C3HHeJ_P0025611 Pcbp3 protein_coding protein_coding MGP_C3HHeJ_T0025612.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76449303 76502683 - MGP_C3HHeJ_P0025612 Pcbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025613.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76475789 76591281 - Pcbp3 protein_coding processed_transcript MGP_C3HHeJ_T0025614.1 MGP_C3HHeJ_G0017151.1 mouse_genomes_project 10 76483834 76505712 - Pcbp3 protein_coding processed_transcript MGP_C3HHeJ_T0099950.1 MGP_C3HHeJ_G0038144.1 mouse_genomes_project 10 61803274 61803339 - Snord98 snoRNA snoRNA MGP_C3HHeJ_T0099932.1 MGP_C3HHeJ_G0038126.1 mouse_genomes_project 10 23183275 23183406 - Gm25016 snoRNA snoRNA MGP_C3HHeJ_T0009528.1 MGP_C3HHeJ_G0007661.1 mouse_genomes_project 10 92757563 92757663 - Mir135a-2 miRNA miRNA MGP_C3HHeJ_T0026697.1 MGP_C3HHeJ_G0017432.1 mouse_genomes_project 10 95968536 96126403 - MGP_C3HHeJ_P0026697 Cradd protein_coding protein_coding MGP_C3HHeJ_T0099930.1 MGP_C3HHeJ_G0038124.1 mouse_genomes_project 10 21632691 21632765 - Snord100 snoRNA snoRNA MGP_C3HHeJ_T0025034.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562098 58726592 + MGP_C3HHeJ_P0025034 Micu1 protein_coding protein_coding MGP_C3HHeJ_T0025035.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562184 58605406 + Micu1 protein_coding retained_intron MGP_C3HHeJ_T0025036.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562220 58726590 + MGP_C3HHeJ_P0025036 Micu1 protein_coding protein_coding MGP_C3HHeJ_T0025037.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562239 58726590 + MGP_C3HHeJ_P0025037 Micu1 protein_coding protein_coding MGP_C3HHeJ_T0025038.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562249 58726583 + MGP_C3HHeJ_P0025038 Micu1 protein_coding protein_coding MGP_C3HHeJ_T0025039.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562270 58651585 + MGP_C3HHeJ_P0025039 Micu1 protein_coding protein_coding MGP_C3HHeJ_T0025040.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58562279 58612215 + Micu1 protein_coding retained_intron MGP_C3HHeJ_T0025041.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58600593 58601268 + Micu1 protein_coding processed_transcript MGP_C3HHeJ_T0025042.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58601283 58617684 + MGP_C3HHeJ_P0025042 Micu1 protein_coding protein_coding MGP_C3HHeJ_T0025043.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58622922 58651683 + Micu1 protein_coding processed_transcript MGP_C3HHeJ_T0025044.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58690422 58704541 + Micu1 protein_coding retained_intron MGP_C3HHeJ_T0025045.1 MGP_C3HHeJ_G0017021.1 mouse_genomes_project 10 58724018 58725863 + Micu1 protein_coding retained_intron MGP_C3HHeJ_T0098744.1 MGP_C3HHeJ_G0036938.1 mouse_genomes_project 10 112540924 112541027 - Gm22101 snRNA snRNA MGP_C3HHeJ_T0002963.1 MGP_C3HHeJ_G0002773.1 mouse_genomes_project 10 41222901 41223384 - Gm15200 antisense antisense MGP_C3HHeJ_T0026352.1 MGP_C3HHeJ_G0017349.1 mouse_genomes_project 10 83511308 83631356 - MGP_C3HHeJ_P0026352 Slc41a2 protein_coding protein_coding MGP_C3HHeJ_T0026353.1 MGP_C3HHeJ_G0017349.1 mouse_genomes_project 10 83588651 83592007 - Slc41a2 protein_coding processed_transcript MGP_C3HHeJ_T0026354.1 MGP_C3HHeJ_G0017349.1 mouse_genomes_project 10 83608054 83615448 - MGP_C3HHeJ_P0026354 Slc41a2 protein_coding protein_coding MGP_C3HHeJ_T0026355.1 MGP_C3HHeJ_G0017349.1 mouse_genomes_project 10 83608181 83630914 - MGP_C3HHeJ_P0026355 Slc41a2 protein_coding protein_coding MGP_C3HHeJ_T0026356.1 MGP_C3HHeJ_G0017349.1 mouse_genomes_project 10 83608411 83628004 - MGP_C3HHeJ_P0026356 Slc41a2 protein_coding protein_coding MGP_C3HHeJ_T0027041.1 MGP_C3HHeJ_G0017558.1 mouse_genomes_project 10 128163668 128214577 + MGP_C3HHeJ_P0027041 Lrig3 protein_coding protein_coding MGP_C3HHeJ_T0025276.1 MGP_C3HHeJ_G0017081.1 mouse_genomes_project 10 63044099 63214672 - MGP_C3HHeJ_P0025276 Lrrtm3 protein_coding protein_coding MGP_C3HHeJ_T0025277.1 MGP_C3HHeJ_G0017081.1 mouse_genomes_project 10 63045517 63214675 - Lrrtm3 protein_coding processed_transcript MGP_C3HHeJ_T0025278.1 MGP_C3HHeJ_G0017081.1 mouse_genomes_project 10 63211893 63214645 - Lrrtm3 protein_coding retained_intron MGP_C3HHeJ_T0025279.1 MGP_C3HHeJ_G0017081.1 mouse_genomes_project 10 63213451 63214648 - MGP_C3HHeJ_P0025279 Lrrtm3 protein_coding protein_coding MGP_C3HHeJ_T0012309.1 MGP_C3HHeJ_G0010413.1 mouse_genomes_project 10 51235536 51235971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025878.1 MGP_C3HHeJ_G0017234.1 mouse_genomes_project 10 79894327 79899628 + MGP_C3HHeJ_P0025878 Kiss1r protein_coding protein_coding MGP_C3HHeJ_T0026708.1 MGP_C3HHeJ_G0017438.1 mouse_genomes_project 10 96789652 96896651 + MGP_C3HHeJ_P0026708 Eea1 protein_coding protein_coding MGP_C3HHeJ_T0026110.1 MGP_C3HHeJ_G0017293.1 mouse_genomes_project 10 80992095 81055253 - MGP_C3HHeJ_P0026110 Gng7 protein_coding protein_coding MGP_C3HHeJ_T0026111.1 MGP_C3HHeJ_G0017293.1 mouse_genomes_project 10 80992095 81041659 - MGP_C3HHeJ_P0026111 Gng7 protein_coding protein_coding MGP_C3HHeJ_T0026112.1 MGP_C3HHeJ_G0017293.1 mouse_genomes_project 10 80992095 81055233 - MGP_C3HHeJ_P0026112 Gng7 protein_coding protein_coding MGP_C3HHeJ_T0026113.1 MGP_C3HHeJ_G0017293.1 mouse_genomes_project 10 80992100 81041672 - MGP_C3HHeJ_P0026113 Gng7 protein_coding protein_coding MGP_C3HHeJ_T0026114.1 MGP_C3HHeJ_G0017293.1 mouse_genomes_project 10 80994658 81038487 - MGP_C3HHeJ_P0026114 Gng7 protein_coding protein_coding MGP_C3HHeJ_T0026115.1 MGP_C3HHeJ_G0017293.1 mouse_genomes_project 10 80995183 81055221 - MGP_C3HHeJ_P0026115 Gng7 protein_coding protein_coding MGP_C3HHeJ_T0026852.1 MGP_C3HHeJ_G0017496.1 mouse_genomes_project 10 116037903 116462502 - MGP_C3HHeJ_P0026852 Trhde protein_coding protein_coding MGP_C3HHeJ_T0026853.1 MGP_C3HHeJ_G0017496.1 mouse_genomes_project 10 116217507 116463386 - Trhde protein_coding retained_intron MGP_C3HHeJ_T0026854.1 MGP_C3HHeJ_G0017496.1 mouse_genomes_project 10 116447821 116462449 - Trhde protein_coding retained_intron MGP_C3HHeJ_T0098701.1 MGP_C3HHeJ_G0036895.1 mouse_genomes_project 10 36913288 36913395 - Gm22911 snRNA snRNA MGP_C3HHeJ_T0024698.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37270553 37313094 + Lama4 protein_coding retained_intron MGP_C3HHeJ_T0024699.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37270553 37428287 + MGP_C3HHeJ_P0024699 Lama4 protein_coding protein_coding MGP_C3HHeJ_T0024700.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37270591 37354582 + Lama4 protein_coding retained_intron MGP_C3HHeJ_T0024701.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37270608 37341348 + Lama4 protein_coding retained_intron MGP_C3HHeJ_T0024702.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37270710 37361854 + Lama4 protein_coding retained_intron MGP_C3HHeJ_T0024703.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37361139 37365002 + Lama4 protein_coding retained_intron MGP_C3HHeJ_T0024704.1 MGP_C3HHeJ_G0016907.1 mouse_genomes_project 10 37423887 37428196 + Lama4 protein_coding retained_intron MGP_C3HHeJ_T0006014.1 MGP_C3HHeJ_G0005025.1 mouse_genomes_project 10 35612708 35659047 + Gm26535 lincRNA lincRNA MGP_C3HHeJ_T0024651.1 MGP_C3HHeJ_G0016882.1 mouse_genomes_project 10 29430017 29506799 - MGP_C3HHeJ_P0024651 Tpd52l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024652.1 MGP_C3HHeJ_G0016882.1 mouse_genomes_project 10 29430017 29478449 - MGP_C3HHeJ_P0024652 Tpd52l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024653.1 MGP_C3HHeJ_G0016882.1 mouse_genomes_project 10 29430027 29545789 - MGP_C3HHeJ_P0024653 Tpd52l1 protein_coding protein_coding MGP_C3HHeJ_T0009535.1 MGP_C3HHeJ_G0007668.1 mouse_genomes_project 10 97747765 97747854 - Gm24587 miRNA miRNA MGP_C3HHeJ_T0099974.1 MGP_C3HHeJ_G0038168.1 mouse_genomes_project 10 118987343 118987420 - Gm26311 snoRNA snoRNA MGP_C3HHeJ_T0009519.1 MGP_C3HHeJ_G0007652.1 mouse_genomes_project 10 81153272 81153332 - Mir5615-1 miRNA miRNA MGP_C3HHeJ_T0098733.1 MGP_C3HHeJ_G0036927.1 mouse_genomes_project 10 91655628 91655731 + Gm25390 snRNA snRNA MGP_C3HHeJ_T0024635.1 MGP_C3HHeJ_G0016875.1 mouse_genomes_project 10 28252744 28257252 - MGP_C3HHeJ_P0024635 Cenpw protein_coding protein_coding MGP_C3HHeJ_T0005994.1 MGP_C3HHeJ_G0005010.1 mouse_genomes_project 10 6140470 6142747 + Gm26674 lincRNA lincRNA MGP_C3HHeJ_T0025772.1 MGP_C3HHeJ_G0017204.1 mouse_genomes_project 10 79291669 79340083 + MGP_C3HHeJ_P0025772 protein_coding protein_coding MGP_C3HHeJ_T0099939.1 MGP_C3HHeJ_G0038133.1 mouse_genomes_project 10 38469311 38469440 + Gm25613 snoRNA snoRNA MGP_C3HHeJ_T0026714.1 MGP_C3HHeJ_G0017443.1 mouse_genomes_project 10 98532617 98539101 + MGP_C3HHeJ_P0026714 Kera protein_coding protein_coding MGP_C3HHeJ_T0009492.1 MGP_C3HHeJ_G0007625.1 mouse_genomes_project 10 43547019 43547130 - Gm24271 miRNA miRNA MGP_C3HHeJ_T0025275.1 MGP_C3HHeJ_G0017080.1 mouse_genomes_project 10 63040493 63043062 - MGP_C3HHeJ_P0025275 Gm10118 protein_coding protein_coding MGP_C3HHeJ_T0026706.1 MGP_C3HHeJ_G0017436.1 mouse_genomes_project 10 96365998 96381796 - MGP_C3HHeJ_P0026706 Nudt4 protein_coding protein_coding MGP_C3HHeJ_T0024715.1 MGP_C3HHeJ_G0016909.1 mouse_genomes_project 10 37453660 37471574 + MGP_C3HHeJ_P0024715 Tube1 protein_coding protein_coding MGP_C3HHeJ_T0009491.1 MGP_C3HHeJ_G0007624.1 mouse_genomes_project 10 42968137 42968230 + Mir1929 miRNA miRNA MGP_C3HHeJ_T0024540.1 MGP_C3HHeJ_G0016838.1 mouse_genomes_project 10 21795383 21796415 + MGP_C3HHeJ_P0024540 Taar3 protein_coding protein_coding MGP_C3HHeJ_T0025746.1 MGP_C3HHeJ_G0017186.1 mouse_genomes_project 10 78289626 78318405 - MGP_C3HHeJ_P0025746 Pdxk protein_coding protein_coding MGP_C3HHeJ_T0003030.1 MGP_C3HHeJ_G0002823.1 mouse_genomes_project 10 121405551 121406497 - Gm16321 antisense antisense MGP_C3HHeJ_T0025129.1 MGP_C3HHeJ_G0017043.1 mouse_genomes_project 10 60448035 60556949 + MGP_C3HHeJ_P0025129 Lrrc20 protein_coding protein_coding MGP_C3HHeJ_T0012290.1 MGP_C3HHeJ_G0010394.1 mouse_genomes_project 10 19887749 19888692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025773.1 MGP_C3HHeJ_G0017205.1 mouse_genomes_project 10 79291685 79340083 + MGP_C3HHeJ_P0025773 protein_coding protein_coding MGP_C3HHeJ_T0024887.1 MGP_C3HHeJ_G0016960.1 mouse_genomes_project 10 42808773 42820314 + MGP_C3HHeJ_P0024887 protein_coding protein_coding MGP_C3HHeJ_T0006045.1 MGP_C3HHeJ_G0005050.1 mouse_genomes_project 10 84833870 84844167 + 4930463O16Rik lincRNA lincRNA MGP_C3HHeJ_T0006046.1 MGP_C3HHeJ_G0005050.1 mouse_genomes_project 10 84834311 84838304 + 4930463O16Rik lincRNA lincRNA MGP_C3HHeJ_T0006090.1 MGP_C3HHeJ_G0005076.1 mouse_genomes_project 10 130813312 130818193 + A430046D13Rik lincRNA lincRNA MGP_C3HHeJ_T0025010.1 MGP_C3HHeJ_G0017009.1 mouse_genomes_project 10 57313261 57390971 + MGP_C3HHeJ_P0025010 Ccdc138 protein_coding protein_coding MGP_C3HHeJ_T0006052.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92756507 92789817 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006053.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92756513 92757188 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006054.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92756601 92789670 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006055.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92760516 92761023 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006056.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92767109 92849192 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006057.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92767109 92849592 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006058.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92769250 92849110 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006059.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92818751 92849589 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006060.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92820482 92847607 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006061.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92820508 92849393 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006063.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92846567 92846627 - Rmst lincRNA misc_RNA MGP_C3HHeJ_T0006064.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92846567 92847225 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0006065.1 MGP_C3HHeJ_G0005056.1 mouse_genomes_project 10 92846610 92849592 - Rmst lincRNA lincRNA MGP_C3HHeJ_T0027085.1 MGP_C3HHeJ_G0017574.1 mouse_genomes_project 10 129391851 129398626 - MGP_C3HHeJ_P0027085 Dtx3 protein_coding protein_coding MGP_C3HHeJ_T0027086.1 MGP_C3HHeJ_G0017574.1 mouse_genomes_project 10 129391851 129398626 - MGP_C3HHeJ_P0027086 Dtx3 protein_coding protein_coding MGP_C3HHeJ_T0027087.1 MGP_C3HHeJ_G0017574.1 mouse_genomes_project 10 129392115 129398644 - MGP_C3HHeJ_P0027087 Dtx3 protein_coding protein_coding MGP_C3HHeJ_T0027088.1 MGP_C3HHeJ_G0017574.1 mouse_genomes_project 10 129392298 129397383 - MGP_C3HHeJ_P0027088 Dtx3 protein_coding protein_coding MGP_C3HHeJ_T0027089.1 MGP_C3HHeJ_G0017574.1 mouse_genomes_project 10 129395277 129398645 - MGP_C3HHeJ_P0027089 Dtx3 protein_coding protein_coding MGP_C3HHeJ_T0027090.1 MGP_C3HHeJ_G0017574.1 mouse_genomes_project 10 129395806 129398636 - Dtx3 protein_coding retained_intron MGP_C3HHeJ_T0011178.1 MGP_C3HHeJ_G0009311.1 mouse_genomes_project 10 61973661 61973944 + Gm22803 misc_RNA misc_RNA MGP_C3HHeJ_T0000792.1 MGP_C3HHeJ_G0000734.1 mouse_genomes_project 10 80516862 80517717 + TEC TEC MGP_C3HHeJ_T0027267.1 MGP_C3HHeJ_G0017632.1 mouse_genomes_project 10 130857576 130863391 - MGP_C3HHeJ_P0027267 Zc3h10 protein_coding protein_coding MGP_C3HHeJ_T0027268.1 MGP_C3HHeJ_G0017632.1 mouse_genomes_project 10 130860414 130863360 - Zc3h10 protein_coding processed_transcript MGP_C3HHeJ_T0027269.1 MGP_C3HHeJ_G0017632.1 mouse_genomes_project 10 130860696 130863256 - Zc3h10 protein_coding processed_transcript MGP_C3HHeJ_T0027270.1 MGP_C3HHeJ_G0017632.1 mouse_genomes_project 10 130860954 130863342 - Zc3h10 protein_coding processed_transcript MGP_C3HHeJ_T0098726.1 MGP_C3HHeJ_G0036920.1 mouse_genomes_project 10 84967194 84967289 + Gm25657 snRNA snRNA MGP_C3HHeJ_T0025678.1 MGP_C3HHeJ_G0017169.1 mouse_genomes_project 10 77579029 77580217 - MGP_C3HHeJ_P0025678 protein_coding protein_coding MGP_C3HHeJ_T0006024.1 MGP_C3HHeJ_G0005035.1 mouse_genomes_project 10 62374907 62378415 - Gm26789 lincRNA lincRNA MGP_C3HHeJ_T0027077.1 MGP_C3HHeJ_G0017570.1 mouse_genomes_project 10 129287740 129316677 - MGP_C3HHeJ_P0027077 Os9 protein_coding protein_coding MGP_C3HHeJ_T0027078.1 MGP_C3HHeJ_G0017570.1 mouse_genomes_project 10 129287740 129316677 - MGP_C3HHeJ_P0027078 Os9 protein_coding protein_coding MGP_C3HHeJ_T0012313.1 MGP_C3HHeJ_G0010417.1 mouse_genomes_project 10 61997918 61998544 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024646.1 MGP_C3HHeJ_G0016881.1 mouse_genomes_project 10 29411044 29425852 + MGP_C3HHeJ_P0024646 Hddc2 protein_coding protein_coding MGP_C3HHeJ_T0024647.1 MGP_C3HHeJ_G0016881.1 mouse_genomes_project 10 29411067 29414695 + Hddc2 protein_coding retained_intron MGP_C3HHeJ_T0024648.1 MGP_C3HHeJ_G0016881.1 mouse_genomes_project 10 29411069 29415506 + Hddc2 protein_coding retained_intron MGP_C3HHeJ_T0024649.1 MGP_C3HHeJ_G0016881.1 mouse_genomes_project 10 29411134 29425832 + MGP_C3HHeJ_P0024649 Hddc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024650.1 MGP_C3HHeJ_G0016881.1 mouse_genomes_project 10 29417814 29425850 + Hddc2 protein_coding retained_intron MGP_C3HHeJ_T0099929.1 MGP_C3HHeJ_G0038123.1 mouse_genomes_project 10 21632288 21632417 - Snora33 snoRNA snoRNA MGP_C3HHeJ_T0006032.1 MGP_C3HHeJ_G0005039.1 mouse_genomes_project 10 65862208 65863153 + Gm28139 lincRNA lincRNA MGP_C3HHeJ_T0025705.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831353 77845916 - MGP_C3HHeJ_P0025705 Aire protein_coding protein_coding MGP_C3HHeJ_T0025706.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831353 77845916 - MGP_C3HHeJ_P0025706 Aire protein_coding protein_coding MGP_C3HHeJ_T0025707.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831353 77845916 - MGP_C3HHeJ_P0025707 Aire protein_coding protein_coding MGP_C3HHeJ_T0025708.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831354 77840523 - Aire protein_coding retained_intron MGP_C3HHeJ_T0025709.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831354 77845946 - MGP_C3HHeJ_P0025709 Aire protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025710.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025710 Aire protein_coding protein_coding MGP_C3HHeJ_T0025711.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025711 Aire protein_coding protein_coding MGP_C3HHeJ_T0025712.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025712 Aire protein_coding protein_coding MGP_C3HHeJ_T0025713.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025713 Aire protein_coding protein_coding MGP_C3HHeJ_T0025714.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025714 Aire protein_coding protein_coding MGP_C3HHeJ_T0025715.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025715 Aire protein_coding protein_coding MGP_C3HHeJ_T0025716.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831362 77845916 - MGP_C3HHeJ_P0025716 Aire protein_coding protein_coding MGP_C3HHeJ_T0025717.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831402 77845916 - MGP_C3HHeJ_P0025717 Aire protein_coding protein_coding MGP_C3HHeJ_T0025718.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77831402 77845908 - MGP_C3HHeJ_P0025718 Aire protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025719.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77834323 77840525 - Aire protein_coding retained_intron MGP_C3HHeJ_T0025720.1 MGP_C3HHeJ_G0017177.1 mouse_genomes_project 10 77838639 77844053 - Aire protein_coding retained_intron MGP_C3HHeJ_T0002991.1 MGP_C3HHeJ_G0002797.1 mouse_genomes_project 10 80797415 80799539 - Gm17151 antisense antisense MGP_C3HHeJ_T0025799.1 MGP_C3HHeJ_G0017215.1 mouse_genomes_project 10 79645486 79651686 + MGP_C3HHeJ_P0025799 Cdc34 protein_coding protein_coding MGP_C3HHeJ_T0025800.1 MGP_C3HHeJ_G0017215.1 mouse_genomes_project 10 79645595 79651686 + MGP_C3HHeJ_P0025800 Cdc34 protein_coding protein_coding MGP_C3HHeJ_T0098727.1 MGP_C3HHeJ_G0036921.1 mouse_genomes_project 10 85170745 85170842 - Gm24226 snRNA snRNA MGP_C3HHeJ_T0025558.1 MGP_C3HHeJ_G0017133.1 mouse_genomes_project 10 75541026 75543179 + MGP_C3HHeJ_P0025558 Chchd10 protein_coding protein_coding MGP_C3HHeJ_T0026970.1 MGP_C3HHeJ_G0017534.1 mouse_genomes_project 10 122083280 122113560 - MGP_C3HHeJ_P0026970 Helb protein_coding protein_coding MGP_C3HHeJ_T0026971.1 MGP_C3HHeJ_G0017534.1 mouse_genomes_project 10 122084380 122093120 - Helb protein_coding retained_intron MGP_C3HHeJ_T0026972.1 MGP_C3HHeJ_G0017534.1 mouse_genomes_project 10 122084442 122113438 - MGP_C3HHeJ_P0026972 Helb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026258.1 MGP_C3HHeJ_G0017327.1 mouse_genomes_project 10 81615925 81633183 - MGP_C3HHeJ_P0026258 Gna11 protein_coding protein_coding MGP_C3HHeJ_T0026259.1 MGP_C3HHeJ_G0017327.1 mouse_genomes_project 10 81617488 81619220 - Gna11 protein_coding retained_intron MGP_C3HHeJ_T0026260.1 MGP_C3HHeJ_G0017327.1 mouse_genomes_project 10 81621147 81623148 - Gna11 protein_coding retained_intron MGP_C3HHeJ_T0027296.1 MGP_C3HHeJ_G0017642.1 mouse_genomes_project 10 131057851 131081766 - MGP_C3HHeJ_P0027296 Dgka protein_coding protein_coding MGP_C3HHeJ_T0027297.1 MGP_C3HHeJ_G0017642.1 mouse_genomes_project 10 131057900 131075530 - MGP_C3HHeJ_P0027297 Dgka protein_coding unknown_likely_coding MGP_C3HHeJ_T0099927.1 MGP_C3HHeJ_G0038121.1 mouse_genomes_project 10 12481228 12481358 + Gm23892 snoRNA snoRNA MGP_C3HHeJ_T0025477.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583035 74596869 + Rab36 protein_coding retained_intron MGP_C3HHeJ_T0025478.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583043 74602829 + MGP_C3HHeJ_P0025478 Rab36 protein_coding protein_coding MGP_C3HHeJ_T0025479.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583061 74602184 + MGP_C3HHeJ_P0025479 Rab36 protein_coding protein_coding MGP_C3HHeJ_T0025480.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583203 74595653 + Rab36 protein_coding retained_intron MGP_C3HHeJ_T0025481.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583250 74594175 + Rab36 protein_coding retained_intron MGP_C3HHeJ_T0025482.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583299 74598776 + MGP_C3HHeJ_P0025482 Rab36 protein_coding protein_coding MGP_C3HHeJ_T0025483.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74583813 74602142 + MGP_C3HHeJ_P0025483 Rab36 protein_coding protein_coding MGP_C3HHeJ_T0025484.1 MGP_C3HHeJ_G0017111.1 mouse_genomes_project 10 74584200 74598771 + Rab36 protein_coding retained_intron MGP_C3HHeJ_T0099965.1 MGP_C3HHeJ_G0038159.1 mouse_genomes_project 10 104283742 104283875 + Gm25376 snoRNA snoRNA MGP_C3HHeJ_T0026380.1 MGP_C3HHeJ_G0017355.1 mouse_genomes_project 10 84712333 84782963 - MGP_C3HHeJ_P0026380 Nuak1 protein_coding protein_coding MGP_C3HHeJ_T0026381.1 MGP_C3HHeJ_G0017355.1 mouse_genomes_project 10 84716724 84734538 - MGP_C3HHeJ_P0026381 Nuak1 protein_coding protein_coding MGP_C3HHeJ_T0024726.1 MGP_C3HHeJ_G0016912.1 mouse_genomes_project 10 37952942 37999606 + MGP_C3HHeJ_P0024726 Traf3ip2 protein_coding protein_coding MGP_C3HHeJ_T0024727.1 MGP_C3HHeJ_G0016912.1 mouse_genomes_project 10 37983807 37989833 + Traf3ip2 protein_coding retained_intron MGP_C3HHeJ_T0024728.1 MGP_C3HHeJ_G0016912.1 mouse_genomes_project 10 37990197 37994995 + Traf3ip2 protein_coding processed_transcript MGP_C3HHeJ_T0024729.1 MGP_C3HHeJ_G0016912.1 mouse_genomes_project 10 37990788 37999122 + Traf3ip2 protein_coding retained_intron MGP_C3HHeJ_T0024730.1 MGP_C3HHeJ_G0016912.1 mouse_genomes_project 10 37994629 37999124 + Traf3ip2 protein_coding retained_intron MGP_C3HHeJ_T0099969.1 MGP_C3HHeJ_G0038163.1 mouse_genomes_project 10 109656772 109656906 + Gm23105 snoRNA snoRNA MGP_C3HHeJ_T0009545.1 MGP_C3HHeJ_G0007678.1 mouse_genomes_project 10 124743151 124743248 + Mir6412 miRNA miRNA MGP_C3HHeJ_T0024678.1 MGP_C3HHeJ_G0016899.1 mouse_genomes_project 10 32455419 32481913 - Nt5dc1 protein_coding processed_transcript MGP_C3HHeJ_T0024680.1 MGP_C3HHeJ_G0016899.1 mouse_genomes_project 10 32471060 32590321 - MGP_C3HHeJ_P0024680 Nt5dc1 protein_coding protein_coding MGP_C3HHeJ_T0024681.1 MGP_C3HHeJ_G0016899.1 mouse_genomes_project 10 32471060 32590308 - MGP_C3HHeJ_P0024681 Nt5dc1 protein_coding protein_coding MGP_C3HHeJ_T0024682.1 MGP_C3HHeJ_G0016899.1 mouse_genomes_project 10 32471716 32590297 - Nt5dc1 protein_coding processed_transcript MGP_C3HHeJ_T0024684.1 MGP_C3HHeJ_G0016899.1 mouse_genomes_project 10 32567909 32590250 - MGP_C3HHeJ_P0024684 Nt5dc1 protein_coding protein_coding MGP_C3HHeJ_T0098728.1 MGP_C3HHeJ_G0036922.1 mouse_genomes_project 10 86467965 86468069 - Gm24430 snRNA snRNA MGP_C3HHeJ_T0098686.1 MGP_C3HHeJ_G0036880.1 mouse_genomes_project 10 1082882 1083039 + Gm25515 snRNA snRNA MGP_C3HHeJ_T0026769.1 MGP_C3HHeJ_G0017463.1 mouse_genomes_project 10 103608902 103617842 - MGP_C3HHeJ_P0026769 Nts protein_coding protein_coding MGP_C3HHeJ_T0026155.1 MGP_C3HHeJ_G0017303.1 mouse_genomes_project 10 81236493 81237731 - MGP_C3HHeJ_P0026155 4930442H23Rik protein_coding protein_coding MGP_C3HHeJ_T0003024.1 MGP_C3HHeJ_G0002821.1 mouse_genomes_project 10 118220704 118222524 + Kcnmb4os2 antisense antisense MGP_C3HHeJ_T0003025.1 MGP_C3HHeJ_G0002821.1 mouse_genomes_project 10 118221569 118222861 + Kcnmb4os2 antisense antisense MGP_C3HHeJ_T0003026.1 MGP_C3HHeJ_G0002821.1 mouse_genomes_project 10 118221886 118222529 + Kcnmb4os2 antisense antisense MGP_C3HHeJ_T0026104.1 MGP_C3HHeJ_G0017289.1 mouse_genomes_project 10 80920167 80941584 + MGP_C3HHeJ_P0026104 Tmprss9 protein_coding protein_coding MGP_C3HHeJ_T0024637.1 MGP_C3HHeJ_G0016877.1 mouse_genomes_project 10 28682255 28692607 - MGP_C3HHeJ_P0024637 Hint3 protein_coding protein_coding MGP_C3HHeJ_T0024638.1 MGP_C3HHeJ_G0016877.1 mouse_genomes_project 10 28682463 28692461 - MGP_C3HHeJ_P0024638 Hint3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024639.1 MGP_C3HHeJ_G0016877.1 mouse_genomes_project 10 28682497 28692465 - MGP_C3HHeJ_P0024639 Hint3 protein_coding protein_coding MGP_C3HHeJ_T0026998.1 MGP_C3HHeJ_G0017542.1 mouse_genomes_project 10 123095935 123168584 + MGP_C3HHeJ_P0026998 Wif1 protein_coding protein_coding MGP_C3HHeJ_T0026999.1 MGP_C3HHeJ_G0017542.1 mouse_genomes_project 10 123095999 123168580 + MGP_C3HHeJ_P0026999 Wif1 protein_coding protein_coding MGP_C3HHeJ_T0027000.1 MGP_C3HHeJ_G0017542.1 mouse_genomes_project 10 123149574 123168571 + Wif1 protein_coding retained_intron MGP_C3HHeJ_T0098748.1 MGP_C3HHeJ_G0036942.1 mouse_genomes_project 10 129335289 129335378 - Gm23664 snRNA snRNA MGP_C3HHeJ_T0026719.1 MGP_C3HHeJ_G0017447.1 mouse_genomes_project 10 98655310 98657192 - MGP_C3HHeJ_P0026719 C030005K15Rik protein_coding protein_coding MGP_C3HHeJ_T0026954.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121416894 122086933 + MGP_C3HHeJ_P0026954 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026955.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121417179 122075578 + MGP_C3HHeJ_P0026955 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026956.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121417185 122077120 + MGP_C3HHeJ_P0026956 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026957.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797828 122077120 + MGP_C3HHeJ_P0026957 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026958.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797837 122076497 + MGP_C3HHeJ_P0026958 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026959.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797944 122007199 + Grip1 protein_coding retained_intron MGP_C3HHeJ_T0026960.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797951 122075578 + MGP_C3HHeJ_P0026960 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026961.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797951 122075578 + MGP_C3HHeJ_P0026961 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026962.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797954 122075498 + MGP_C3HHeJ_P0026962 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026963.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121797964 122086733 + MGP_C3HHeJ_P0026963 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026964.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121831547 122077115 + Grip1 protein_coding retained_intron MGP_C3HHeJ_T0026965.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121894541 122075498 + Grip1 protein_coding processed_transcript MGP_C3HHeJ_T0026966.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121989177 122086934 + MGP_C3HHeJ_P0026966 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026967.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121989379 122076992 + MGP_C3HHeJ_P0026967 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026968.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121989527 122075774 + MGP_C3HHeJ_P0026968 Grip1 protein_coding protein_coding MGP_C3HHeJ_T0026969.1 MGP_C3HHeJ_G0017533.1 mouse_genomes_project 10 121989563 122086933 + MGP_C3HHeJ_P0026969 Grip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024482.1 MGP_C3HHeJ_G0016816.1 mouse_genomes_project 10 18031986 18047034 + MGP_C3HHeJ_P0024482 Mtfr2 protein_coding protein_coding MGP_C3HHeJ_T0024483.1 MGP_C3HHeJ_G0016816.1 mouse_genomes_project 10 18032078 18045917 + MGP_C3HHeJ_P0024483 Mtfr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026157.1 MGP_C3HHeJ_G0017305.1 mouse_genomes_project 10 81263210 81267078 - MGP_C3HHeJ_P0026157 Nmrk2 protein_coding protein_coding MGP_C3HHeJ_T0003007.1 MGP_C3HHeJ_G0002809.1 mouse_genomes_project 10 87298049 87333576 + Gm16268 antisense antisense MGP_C3HHeJ_T0025046.1 MGP_C3HHeJ_G0017022.1 mouse_genomes_project 10 58742914 58762894 + MGP_C3HHeJ_P0025046 Dnajb12 protein_coding protein_coding MGP_C3HHeJ_T0025047.1 MGP_C3HHeJ_G0017022.1 mouse_genomes_project 10 58742922 58761606 + MGP_C3HHeJ_P0025047 Dnajb12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025048.1 MGP_C3HHeJ_G0017022.1 mouse_genomes_project 10 58742933 58762888 + MGP_C3HHeJ_P0025048 Dnajb12 protein_coding protein_coding MGP_C3HHeJ_T0025049.1 MGP_C3HHeJ_G0017022.1 mouse_genomes_project 10 58742976 58760367 + MGP_C3HHeJ_P0025049 Dnajb12 protein_coding protein_coding MGP_C3HHeJ_T0025050.1 MGP_C3HHeJ_G0017022.1 mouse_genomes_project 10 58742984 58762113 + MGP_C3HHeJ_P0025050 Dnajb12 protein_coding protein_coding MGP_C3HHeJ_T0098719.1 MGP_C3HHeJ_G0036913.1 mouse_genomes_project 10 66495415 66495516 - Gm26359 snRNA snRNA MGP_C3HHeJ_T0098239.1 MGP_C3HHeJ_G0036451.1 mouse_genomes_project 10 2065831 2066113 - Gm25694 ribozyme ribozyme MGP_C3HHeJ_T0025125.1 MGP_C3HHeJ_G0017039.1 mouse_genomes_project 10 60281643 60345895 - MGP_C3HHeJ_P0025125 Pald1 protein_coding protein_coding MGP_C3HHeJ_T0025755.1 MGP_C3HHeJ_G0017193.1 mouse_genomes_project 10 78648834 78676744 + MGP_C3HHeJ_P0025755 Slc1a6 protein_coding protein_coding MGP_C3HHeJ_T0024374.1 MGP_C3HHeJ_G0016784.1 mouse_genomes_project 10 10925272 10958992 - MGP_C3HHeJ_P0024374 Pex3 protein_coding protein_coding MGP_C3HHeJ_T0024375.1 MGP_C3HHeJ_G0016784.1 mouse_genomes_project 10 10926315 10958748 - MGP_C3HHeJ_P0024375 Pex3 protein_coding protein_coding MGP_C3HHeJ_T0024376.1 MGP_C3HHeJ_G0016784.1 mouse_genomes_project 10 10930397 10937392 - Pex3 protein_coding retained_intron MGP_C3HHeJ_T0024377.1 MGP_C3HHeJ_G0016784.1 mouse_genomes_project 10 10932696 10958714 - Pex3 protein_coding processed_transcript MGP_C3HHeJ_T0024378.1 MGP_C3HHeJ_G0016784.1 mouse_genomes_project 10 10937157 10958669 - Pex3 protein_coding processed_transcript MGP_C3HHeJ_T0024282.1 MGP_C3HHeJ_G0016762.1 mouse_genomes_project 10 5040582 5086504 + MGP_C3HHeJ_P0024282 Zc3h12d protein_coding protein_coding MGP_C3HHeJ_T0098341.1 MGP_C3HHeJ_G0036552.1 mouse_genomes_project 10 95168898 95170740 + Gm16155 sense_intronic sense_intronic MGP_C3HHeJ_T0006044.1 MGP_C3HHeJ_G0005049.1 mouse_genomes_project 10 83067931 83082465 + 1700028I16Rik lincRNA lincRNA MGP_C3HHeJ_T0025426.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 72584812 73838755 + Pcdh15 protein_coding retained_intron MGP_C3HHeJ_T0025427.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 72584905 73233150 + Pcdh15 protein_coding retained_intron MGP_C3HHeJ_T0025428.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 72584923 72986217 + Pcdh15 protein_coding retained_intron MGP_C3HHeJ_T0025429.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345922 74180876 + MGP_C3HHeJ_P0025429 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025430.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345922 74171267 + MGP_C3HHeJ_P0025430 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025431.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74186233 + MGP_C3HHeJ_P0025431 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025432.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025432 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025433.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169038 + MGP_C3HHeJ_P0025433 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025434.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025434 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025435.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025435 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025436.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025436 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025437.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025437 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025438.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025438 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025439.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025439 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025440.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025440 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025441.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74170100 + MGP_C3HHeJ_P0025441 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025442.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025442 Pcdh15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025443.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025443 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025444.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74182813 + MGP_C3HHeJ_P0025444 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025445.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025445 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025446.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74182977 + MGP_C3HHeJ_P0025446 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025447.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025447 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025448.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025448 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025449.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74182813 + MGP_C3HHeJ_P0025449 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025450.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025450 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025451.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74181226 + MGP_C3HHeJ_P0025451 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025452.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025452 Pcdh15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025453.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345938 74169166 + MGP_C3HHeJ_P0025453 Pcdh15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025454.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345998 74039651 + MGP_C3HHeJ_P0025454 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025455.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345998 74039651 + MGP_C3HHeJ_P0025455 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025456.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73345998 74039651 + MGP_C3HHeJ_P0025456 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025457.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73471380 74182667 + MGP_C3HHeJ_P0025457 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025458.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73471380 74182571 + MGP_C3HHeJ_P0025458 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025459.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73471380 74180717 + MGP_C3HHeJ_P0025459 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025460.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73824358 73852793 + Pcdh15 protein_coding processed_transcript MGP_C3HHeJ_T0025461.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73882087 74169169 + MGP_C3HHeJ_P0025461 Pcdh15 protein_coding protein_coding MGP_C3HHeJ_T0025462.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 73913246 73924090 + Pcdh15 protein_coding retained_intron MGP_C3HHeJ_T0025463.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 74119294 74161118 + Pcdh15 protein_coding retained_intron MGP_C3HHeJ_T0025464.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 74167413 74182713 + Pcdh15 protein_coding processed_transcript MGP_C3HHeJ_T0025465.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 74167910 74173182 + Pcdh15 protein_coding retained_intron MGP_C3HHeJ_T0025466.1 MGP_C3HHeJ_G0017108.1 mouse_genomes_project 10 74168335 74178863 + Pcdh15 protein_coding processed_transcript MGP_C3HHeJ_T0024547.1 MGP_C3HHeJ_G0016845.1 mouse_genomes_project 10 21887798 21888875 + MGP_C3HHeJ_P0024547 Taar7d protein_coding protein_coding MGP_C3HHeJ_T0024677.1 MGP_C3HHeJ_G0016898.1 mouse_genomes_project 10 32449332 32452407 + MGP_C3HHeJ_P0024677 Tspyl1 protein_coding protein_coding MGP_C3HHeJ_T0027075.1 MGP_C3HHeJ_G0017568.1 mouse_genomes_project 10 129258466 129261413 - MGP_C3HHeJ_P0027075 Tspan31 protein_coding protein_coding MGP_C3HHeJ_T0012318.1 MGP_C3HHeJ_G0010422.1 mouse_genomes_project 10 74400283 74400715 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006009.1 MGP_C3HHeJ_G0005020.1 mouse_genomes_project 10 19463370 19466510 + Gm29323 lincRNA lincRNA MGP_C3HHeJ_T0024192.1 MGP_C3HHeJ_G0016747.1 mouse_genomes_project 10 2855263 2861703 - MGP_C3HHeJ_P0024192 Fbxo5 protein_coding protein_coding MGP_C3HHeJ_T0024193.1 MGP_C3HHeJ_G0016747.1 mouse_genomes_project 10 2858303 2860701 - Fbxo5 protein_coding processed_transcript MGP_C3HHeJ_T0098724.1 MGP_C3HHeJ_G0036918.1 mouse_genomes_project 10 80481418 80481522 + Gm25044 snRNA snRNA MGP_C3HHeJ_T0024334.1 MGP_C3HHeJ_G0016778.1 mouse_genomes_project 10 10388419 10392252 + MGP_C3HHeJ_P0024334 Sf3b5 protein_coding protein_coding MGP_C3HHeJ_T0098687.1 MGP_C3HHeJ_G0036881.1 mouse_genomes_project 10 1501210 1501370 + Gm22739 snRNA snRNA MGP_C3HHeJ_T0098718.1 MGP_C3HHeJ_G0036912.1 mouse_genomes_project 10 65378510 65378616 - Gm22829 snRNA snRNA MGP_C3HHeJ_T0025319.1 MGP_C3HHeJ_G0017094.1 mouse_genomes_project 10 68556017 68561162 - MGP_C3HHeJ_P0025319 A930033H14Rik protein_coding protein_coding MGP_C3HHeJ_T0027390.1 MGP_C3HHeJ_G0017700.1 mouse_genomes_project 10 132588449 132589401 - MGP_C3HHeJ_P0027390 protein_coding protein_coding MGP_C3HHeJ_T0026640.1 MGP_C3HHeJ_G0017420.1 mouse_genomes_project 10 94333820 94352214 + MGP_C3HHeJ_P0026640 4933408J17Rik protein_coding protein_coding MGP_C3HHeJ_T0024266.1 MGP_C3HHeJ_G0016759.1 mouse_genomes_project 10 4929294 4967237 + MGP_C3HHeJ_P0024266 Katna1 protein_coding protein_coding MGP_C3HHeJ_T0024267.1 MGP_C3HHeJ_G0016759.1 mouse_genomes_project 10 4929294 4967238 + MGP_C3HHeJ_P0024267 Katna1 protein_coding protein_coding MGP_C3HHeJ_T0024268.1 MGP_C3HHeJ_G0016759.1 mouse_genomes_project 10 4929302 4956289 + MGP_C3HHeJ_P0024268 Katna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024269.1 MGP_C3HHeJ_G0016759.1 mouse_genomes_project 10 4953783 4964324 + Katna1 protein_coding retained_intron MGP_C3HHeJ_T0024270.1 MGP_C3HHeJ_G0016759.1 mouse_genomes_project 10 4963862 4967152 + MGP_C3HHeJ_P0024270 Katna1 protein_coding protein_coding MGP_C3HHeJ_T0024271.1 MGP_C3HHeJ_G0016759.1 mouse_genomes_project 10 4965319 4967236 + MGP_C3HHeJ_P0024271 Katna1 protein_coding protein_coding MGP_C3HHeJ_T0026379.1 MGP_C3HHeJ_G0017354.1 mouse_genomes_project 10 84046297 84091415 + MGP_C3HHeJ_P0026379 1500009L16Rik protein_coding protein_coding MGP_C3HHeJ_T0024919.1 MGP_C3HHeJ_G0016973.1 mouse_genomes_project 10 49366711 49634863 + MGP_C3HHeJ_P0024919 Ascc3 protein_coding protein_coding MGP_C3HHeJ_T0026020.1 MGP_C3HHeJ_G0017263.1 mouse_genomes_project 10 80379708 80387730 - MGP_C3HHeJ_P0026020 Mex3d protein_coding protein_coding MGP_C3HHeJ_T0026021.1 MGP_C3HHeJ_G0017263.1 mouse_genomes_project 10 80379710 80387727 - MGP_C3HHeJ_P0026021 Mex3d protein_coding protein_coding MGP_C3HHeJ_T0026022.1 MGP_C3HHeJ_G0017263.1 mouse_genomes_project 10 80379807 80381341 - MGP_C3HHeJ_P0026022 Mex3d protein_coding protein_coding MGP_C3HHeJ_T0012324.1 MGP_C3HHeJ_G0010428.1 mouse_genomes_project 10 86509437 86509554 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025490.1 MGP_C3HHeJ_G0017116.1 mouse_genomes_project 10 74971962 75008696 + MGP_C3HHeJ_P0025490 Upb1 protein_coding protein_coding MGP_C3HHeJ_T0025491.1 MGP_C3HHeJ_G0017116.1 mouse_genomes_project 10 74972009 74990952 + Upb1 protein_coding retained_intron MGP_C3HHeJ_T0025492.1 MGP_C3HHeJ_G0017116.1 mouse_genomes_project 10 74975094 74993702 + Upb1 protein_coding retained_intron MGP_C3HHeJ_T0025494.1 MGP_C3HHeJ_G0017116.1 mouse_genomes_project 10 74994105 74996244 + Upb1 protein_coding retained_intron MGP_C3HHeJ_T0025122.1 MGP_C3HHeJ_G0017037.1 mouse_genomes_project 10 60143672 60224986 - MGP_C3HHeJ_P0025122 Adamts14 protein_coding protein_coding MGP_C3HHeJ_T0025123.1 MGP_C3HHeJ_G0017037.1 mouse_genomes_project 10 60145014 60224790 - MGP_C3HHeJ_P0025123 Adamts14 protein_coding protein_coding MGP_C3HHeJ_T0025561.1 MGP_C3HHeJ_G0017135.1 mouse_genomes_project 10 75561049 75620332 + MGP_C3HHeJ_P0025561 Gm5134 protein_coding protein_coding MGP_C3HHeJ_T0025562.1 MGP_C3HHeJ_G0017135.1 mouse_genomes_project 10 75585921 75609095 + Gm5134 protein_coding retained_intron MGP_C3HHeJ_T0026075.1 MGP_C3HHeJ_G0017277.1 mouse_genomes_project 10 80710011 80726557 - MGP_C3HHeJ_P0026075 Mob3a protein_coding protein_coding MGP_C3HHeJ_T0098735.1 MGP_C3HHeJ_G0036929.1 mouse_genomes_project 10 94935612 94935694 - Gm26122 snRNA snRNA MGP_C3HHeJ_T0024596.1 MGP_C3HHeJ_G0016864.1 mouse_genomes_project 10 24706282 24819851 + MGP_C3HHeJ_P0024596 Arhgap18 protein_coding protein_coding MGP_C3HHeJ_T0024597.1 MGP_C3HHeJ_G0016864.1 mouse_genomes_project 10 24726934 24880731 + MGP_C3HHeJ_P0024597 Arhgap18 protein_coding protein_coding MGP_C3HHeJ_T0024598.1 MGP_C3HHeJ_G0016864.1 mouse_genomes_project 10 24780778 24807978 + MGP_C3HHeJ_P0024598 Arhgap18 protein_coding protein_coding MGP_C3HHeJ_T0024599.1 MGP_C3HHeJ_G0016864.1 mouse_genomes_project 10 24822444 24880541 + Arhgap18 protein_coding processed_transcript MGP_C3HHeJ_T0099981.1 MGP_C3HHeJ_G0038175.1 mouse_genomes_project 10 131693818 131693952 + Gm25764 snoRNA snoRNA MGP_C3HHeJ_T0002961.1 MGP_C3HHeJ_G0002771.1 mouse_genomes_project 10 39991209 39994250 + Gm17196 antisense antisense MGP_C3HHeJ_T0024664.1 MGP_C3HHeJ_G0016887.1 mouse_genomes_project 10 31901018 31914751 - MGP_C3HHeJ_P0024664 Sult3a2 protein_coding protein_coding MGP_C3HHeJ_T0009482.1 MGP_C3HHeJ_G0007615.1 mouse_genomes_project 10 5044498 5044592 + Mir5104 miRNA miRNA MGP_C3HHeJ_T0024993.1 MGP_C3HHeJ_G0017004.1 mouse_genomes_project 10 57029229 57030712 - MGP_C3HHeJ_P0024993 Gm4981 protein_coding protein_coding MGP_C3HHeJ_T0003002.1 MGP_C3HHeJ_G0002805.1 mouse_genomes_project 10 83414799 83417688 - 1700025N21Rik antisense antisense MGP_C3HHeJ_T0026886.1 MGP_C3HHeJ_G0017509.1 mouse_genomes_project 10 118154991 118221420 - MGP_C3HHeJ_P0026886 Kcnmb4 protein_coding protein_coding MGP_C3HHeJ_T0026887.1 MGP_C3HHeJ_G0017509.1 mouse_genomes_project 10 118174494 118220977 - MGP_C3HHeJ_P0026887 Kcnmb4 protein_coding protein_coding MGP_C3HHeJ_T0026888.1 MGP_C3HHeJ_G0017509.1 mouse_genomes_project 10 118206864 118220964 - MGP_C3HHeJ_P0026888 Kcnmb4 protein_coding protein_coding MGP_C3HHeJ_T0098740.1 MGP_C3HHeJ_G0036934.1 mouse_genomes_project 10 106180094 106180260 + Gm25587 snRNA snRNA MGP_C3HHeJ_T0027353.1 MGP_C3HHeJ_G0017676.1 mouse_genomes_project 10 131958357 131962319 + MGP_C3HHeJ_P0027353 Olfr794 protein_coding protein_coding MGP_C3HHeJ_T0027354.1 MGP_C3HHeJ_G0017676.1 mouse_genomes_project 10 131961356 131962319 + MGP_C3HHeJ_P0027354 Olfr794 protein_coding protein_coding MGP_C3HHeJ_T0011186.1 MGP_C3HHeJ_G0009319.1 mouse_genomes_project 10 92789587 92789790 - Gm27753 misc_RNA misc_RNA MGP_C3HHeJ_T0027260.1 MGP_C3HHeJ_G0017628.1 mouse_genomes_project 10 130772794 130803931 + MGP_C3HHeJ_P0027260 Smarcc2 protein_coding protein_coding MGP_C3HHeJ_T0027261.1 MGP_C3HHeJ_G0017628.1 mouse_genomes_project 10 130772794 130803931 + MGP_C3HHeJ_P0027261 Smarcc2 protein_coding protein_coding MGP_C3HHeJ_T0027262.1 MGP_C3HHeJ_G0017628.1 mouse_genomes_project 10 130772794 130803931 + MGP_C3HHeJ_P0027262 Smarcc2 protein_coding protein_coding MGP_C3HHeJ_T0027388.1 MGP_C3HHeJ_G0017698.1 mouse_genomes_project 10 132529953 132530961 + MGP_C3HHeJ_P0027388 Olfr822 protein_coding protein_coding MGP_C3HHeJ_T0000798.1 MGP_C3HHeJ_G0000739.1 mouse_genomes_project 10 106287228 106287935 - TEC TEC MGP_C3HHeJ_T0099972.1 MGP_C3HHeJ_G0038166.1 mouse_genomes_project 10 112921169 112921313 + Gm25117 snoRNA snoRNA MGP_C3HHeJ_T0024530.1 MGP_C3HHeJ_G0016832.1 mouse_genomes_project 10 21632152 21634137 - MGP_C3HHeJ_P0024530 Rps12 protein_coding protein_coding MGP_C3HHeJ_T0024945.1 MGP_C3HHeJ_G0016987.1 mouse_genomes_project 10 52162139 52271565 - MGP_C3HHeJ_P0024945 Cep85l protein_coding protein_coding MGP_C3HHeJ_T0099942.1 MGP_C3HHeJ_G0038136.1 mouse_genomes_project 10 39626011 39626143 + Gm25526 snoRNA snoRNA MGP_C3HHeJ_T0016904.1 MGP_C3HHeJ_G0014899.1 mouse_genomes_project 10 87158221 87159198 - Gm15344 processed_transcript processed_transcript MGP_C3HHeJ_T0025382.1 MGP_C3HHeJ_G0017097.1 mouse_genomes_project 10 69488502 69584758 + MGP_C3HHeJ_P0025382 protein_coding unknown_likely_coding MGP_C3HHeJ_T0025383.1 MGP_C3HHeJ_G0017097.1 mouse_genomes_project 10 69569503 69577707 + protein_coding retained_intron MGP_C3HHeJ_T0025384.1 MGP_C3HHeJ_G0017097.1 mouse_genomes_project 10 69570005 69583654 + MGP_C3HHeJ_P0025384 protein_coding protein_coding MGP_C3HHeJ_T0025385.1 MGP_C3HHeJ_G0017097.1 mouse_genomes_project 10 69570041 69583667 + MGP_C3HHeJ_P0025385 protein_coding protein_coding MGP_C3HHeJ_T0006043.1 MGP_C3HHeJ_G0005048.1 mouse_genomes_project 10 81698168 81701592 - Gm26896 lincRNA lincRNA MGP_C3HHeJ_T0002959.1 MGP_C3HHeJ_G0002770.1 mouse_genomes_project 10 38720272 38721868 - Cdk19os antisense antisense MGP_C3HHeJ_T0002960.1 MGP_C3HHeJ_G0002770.1 mouse_genomes_project 10 38720856 38721868 - Cdk19os antisense antisense MGP_C3HHeJ_T0026996.1 MGP_C3HHeJ_G0017541.1 mouse_genomes_project 10 122969012 123025882 - MGP_C3HHeJ_P0026996 Lemd3 protein_coding protein_coding MGP_C3HHeJ_T0026997.1 MGP_C3HHeJ_G0017541.1 mouse_genomes_project 10 122969451 123025882 - MGP_C3HHeJ_P0026997 Lemd3 protein_coding protein_coding MGP_C3HHeJ_T0011172.1 MGP_C3HHeJ_G0009305.1 mouse_genomes_project 10 10479178 10479415 - Gm27741 misc_RNA misc_RNA MGP_C3HHeJ_T0024933.1 MGP_C3HHeJ_G0016981.1 mouse_genomes_project 10 51075732 51167754 + MGP_C3HHeJ_P0024933 Dcbld1 protein_coding protein_coding MGP_C3HHeJ_T0024934.1 MGP_C3HHeJ_G0016981.1 mouse_genomes_project 10 51075746 51131836 + Dcbld1 protein_coding retained_intron MGP_C3HHeJ_T0024935.1 MGP_C3HHeJ_G0016981.1 mouse_genomes_project 10 51075750 51167756 + MGP_C3HHeJ_P0024935 Dcbld1 protein_coding protein_coding MGP_C3HHeJ_T0099970.1 MGP_C3HHeJ_G0038164.1 mouse_genomes_project 10 112171799 112171927 + Gm23698 snoRNA snoRNA MGP_C3HHeJ_T0026738.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101442772 101491272 - MGP_C3HHeJ_P0026738 Tmtc3 protein_coding protein_coding MGP_C3HHeJ_T0026739.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101445510 101491175 - MGP_C3HHeJ_P0026739 Tmtc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026740.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101445540 101491175 - MGP_C3HHeJ_P0026740 Tmtc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026741.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101448624 101491269 - MGP_C3HHeJ_P0026741 Tmtc3 protein_coding protein_coding MGP_C3HHeJ_T0026742.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101477190 101491261 - Tmtc3 protein_coding retained_intron MGP_C3HHeJ_T0026743.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101478413 101491189 - MGP_C3HHeJ_P0026743 Tmtc3 protein_coding protein_coding MGP_C3HHeJ_T0026744.1 MGP_C3HHeJ_G0017458.1 mouse_genomes_project 10 101482644 101491248 - MGP_C3HHeJ_P0026744 Tmtc3 protein_coding protein_coding MGP_C3HHeJ_T0026731.1 MGP_C3HHeJ_G0017453.1 mouse_genomes_project 10 100430142 100433423 + MGP_C3HHeJ_P0026731 Gad1-ps protein_coding protein_coding MGP_C3HHeJ_T0024409.1 MGP_C3HHeJ_G0016792.1 mouse_genomes_project 10 15326069 15328515 + MGP_C3HHeJ_P0024409 Cited2 protein_coding protein_coding MGP_C3HHeJ_T0026031.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409570 80433698 - MGP_C3HHeJ_P0026031 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026032.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409570 80433688 - MGP_C3HHeJ_P0026032 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026033.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409603 80433694 - MGP_C3HHeJ_P0026033 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026034.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409603 80433698 - MGP_C3HHeJ_P0026034 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026035.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409664 80433672 - MGP_C3HHeJ_P0026035 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026036.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409664 80433672 - MGP_C3HHeJ_P0026036 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026037.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409676 80431063 - MGP_C3HHeJ_P0026037 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026038.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409682 80433686 - MGP_C3HHeJ_P0026038 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026039.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80409682 80433686 - MGP_C3HHeJ_P0026039 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026040.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80410110 80431036 - MGP_C3HHeJ_P0026040 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026041.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80410110 80431133 - MGP_C3HHeJ_P0026041 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0026042.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80412683 80415544 - Tcf3 protein_coding processed_transcript MGP_C3HHeJ_T0026043.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80415299 80416345 - Tcf3 protein_coding retained_intron MGP_C3HHeJ_T0026044.1 MGP_C3HHeJ_G0017266.1 mouse_genomes_project 10 80420139 80421917 - MGP_C3HHeJ_P0026044 Tcf3 protein_coding protein_coding MGP_C3HHeJ_T0101625.1 MGP_C3HHeJ_G0039591.1 mouse_genomes_project 10 132430853 132431042 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0024455.1 MGP_C3HHeJ_G0016808.1 mouse_genomes_project 10 17309817 17326939 + MGP_C3HHeJ_P0024455 protein_coding protein_coding MGP_C3HHeJ_T0027014.1 MGP_C3HHeJ_G0017550.1 mouse_genomes_project 10 123868513 124142903 - MGP_C3HHeJ_P0027014 Srgap1 protein_coding protein_coding MGP_C3HHeJ_T0027015.1 MGP_C3HHeJ_G0017550.1 mouse_genomes_project 10 123868513 124142896 - MGP_C3HHeJ_P0027015 Srgap1 protein_coding protein_coding MGP_C3HHeJ_T0027016.1 MGP_C3HHeJ_G0017550.1 mouse_genomes_project 10 123872749 123894602 - Srgap1 protein_coding processed_transcript MGP_C3HHeJ_T0027017.1 MGP_C3HHeJ_G0017550.1 mouse_genomes_project 10 123894137 123910656 - MGP_C3HHeJ_P0027017 Srgap1 protein_coding protein_coding MGP_C3HHeJ_T0027018.1 MGP_C3HHeJ_G0017550.1 mouse_genomes_project 10 123991336 124142903 - Srgap1 protein_coding retained_intron MGP_C3HHeJ_T0012291.1 MGP_C3HHeJ_G0010395.1 mouse_genomes_project 10 21906151 21906766 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0024400.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12166600 12235468 + MGP_C3HHeJ_P0024400 Nmbr protein_coding protein_coding MGP_C3HHeJ_T0024401.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12166606 12220984 + Nmbr protein_coding processed_transcript MGP_C3HHeJ_T0024402.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12166618 12227715 + Nmbr protein_coding processed_transcript MGP_C3HHeJ_T0024403.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12166630 12235991 + MGP_C3HHeJ_P0024403 Nmbr protein_coding protein_coding MGP_C3HHeJ_T0024404.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12166636 12186278 + Nmbr protein_coding retained_intron MGP_C3HHeJ_T0024406.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12228853 12239549 + MGP_C3HHeJ_P0024406 Nmbr protein_coding protein_coding MGP_C3HHeJ_T0024407.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12228915 12239282 + MGP_C3HHeJ_P0024407 Nmbr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024408.1 MGP_C3HHeJ_G0016790.1 mouse_genomes_project 10 12228915 12239282 + MGP_C3HHeJ_P0024408 Nmbr protein_coding protein_coding MGP_C3HHeJ_T0009521.1 MGP_C3HHeJ_G0007654.1 mouse_genomes_project 10 81342811 81342902 + Mir3057 miRNA miRNA MGP_C3HHeJ_T0012328.1 MGP_C3HHeJ_G0010432.1 mouse_genomes_project 10 97353843 97354752 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027265.1 MGP_C3HHeJ_G0017630.1 mouse_genomes_project 10 130807913 130812410 - MGP_C3HHeJ_P0027265 Myl6b protein_coding protein_coding MGP_C3HHeJ_T0006004.1 MGP_C3HHeJ_G0005018.1 mouse_genomes_project 10 19142272 19149667 + 1700021A07Rik lincRNA lincRNA MGP_C3HHeJ_T0006005.1 MGP_C3HHeJ_G0005018.1 mouse_genomes_project 10 19142391 19148848 + 1700021A07Rik lincRNA lincRNA MGP_C3HHeJ_T0006006.1 MGP_C3HHeJ_G0005018.1 mouse_genomes_project 10 19148443 19148752 + 1700021A07Rik lincRNA lincRNA MGP_C3HHeJ_T0098697.1 MGP_C3HHeJ_G0036891.1 mouse_genomes_project 10 27378223 27378330 + Gm25596 snRNA snRNA MGP_C3HHeJ_T0024922.1 MGP_C3HHeJ_G0016976.1 mouse_genomes_project 10 50444763 50461408 - MGP_C3HHeJ_P0024922 Gprc6a protein_coding protein_coding MGP_C3HHeJ_T0006067.1 MGP_C3HHeJ_G0005059.1 mouse_genomes_project 10 94635641 94640332 + 4930471D02Rik lincRNA lincRNA MGP_C3HHeJ_T0099956.1 MGP_C3HHeJ_G0038150.1 mouse_genomes_project 10 77715037 77715113 - Gm22394 snoRNA snoRNA MGP_C3HHeJ_T0026828.1 MGP_C3HHeJ_G0017484.1 mouse_genomes_project 10 112331778 112401973 - MGP_C3HHeJ_P0026828 Zdhhc17 protein_coding protein_coding MGP_C3HHeJ_T0026829.1 MGP_C3HHeJ_G0017484.1 mouse_genomes_project 10 112353867 112401910 - MGP_C3HHeJ_P0026829 Zdhhc17 protein_coding protein_coding MGP_C3HHeJ_T0026464.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88346681 88420549 + MGP_C3HHeJ_P0026464 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026465.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88347481 88426699 + MGP_C3HHeJ_P0026465 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026466.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88347671 88421455 + MGP_C3HHeJ_P0026466 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026467.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88347903 88420547 + MGP_C3HHeJ_P0026467 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026468.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88348024 88403762 + MGP_C3HHeJ_P0026468 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026469.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88348443 88404307 + MGP_C3HHeJ_P0026469 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026470.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88349019 88420553 + MGP_C3HHeJ_P0026470 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0026471.1 MGP_C3HHeJ_G0017385.1 mouse_genomes_project 10 88349742 88420531 + MGP_C3HHeJ_P0026471 Igf1 protein_coding protein_coding MGP_C3HHeJ_T0012306.1 MGP_C3HHeJ_G0010410.1 mouse_genomes_project 10 43639341 43640349 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012288.1 MGP_C3HHeJ_G0010392.1 mouse_genomes_project 10 18319013 18322955 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099952.1 MGP_C3HHeJ_G0038146.1 mouse_genomes_project 10 65693491 65693621 + Gm22594 snoRNA snoRNA MGP_C3HHeJ_T0026060.1 MGP_C3HHeJ_G0017272.1 mouse_genomes_project 10 80619113 80623868 + MGP_C3HHeJ_P0026060 Adat3 protein_coding protein_coding MGP_C3HHeJ_T0026063.1 MGP_C3HHeJ_G0017272.1 mouse_genomes_project 10 80622248 80631986 + MGP_C3HHeJ_P0026063 Adat3 protein_coding protein_coding MGP_C3HHeJ_T0027325.1 MGP_C3HHeJ_G0017656.1 mouse_genomes_project 10 131510632 131511716 - MGP_C3HHeJ_P0027325 Olfr769 protein_coding protein_coding MGP_C3HHeJ_T0024874.1 MGP_C3HHeJ_G0016954.1 mouse_genomes_project 10 42099498 42115408 - MGP_C3HHeJ_P0024874 1700021F05Rik protein_coding protein_coding MGP_C3HHeJ_T0024875.1 MGP_C3HHeJ_G0016954.1 mouse_genomes_project 10 42099510 42115382 - MGP_C3HHeJ_P0024875 1700021F05Rik protein_coding protein_coding MGP_C3HHeJ_T0024876.1 MGP_C3HHeJ_G0016954.1 mouse_genomes_project 10 42099536 42100221 - 1700021F05Rik protein_coding processed_transcript MGP_C3HHeJ_T0024877.1 MGP_C3HHeJ_G0016954.1 mouse_genomes_project 10 42107557 42115408 - 1700021F05Rik protein_coding processed_transcript MGP_C3HHeJ_T0009518.1 MGP_C3HHeJ_G0007651.1 mouse_genomes_project 10 80861555 80861628 + Mir1982 miRNA miRNA MGP_C3HHeJ_T0026387.1 MGP_C3HHeJ_G0017358.1 mouse_genomes_project 10 84976427 85091442 + MGP_C3HHeJ_P0026387 Polr3b protein_coding protein_coding MGP_C3HHeJ_T0026993.1 MGP_C3HHeJ_G0017540.1 mouse_genomes_project 10 122822609 122892185 - Msrb3 protein_coding processed_transcript MGP_C3HHeJ_T0026994.1 MGP_C3HHeJ_G0017540.1 mouse_genomes_project 10 122822751 122913529 - MGP_C3HHeJ_P0026994 Msrb3 protein_coding protein_coding MGP_C3HHeJ_T0026995.1 MGP_C3HHeJ_G0017540.1 mouse_genomes_project 10 122822925 122942349 - MGP_C3HHeJ_P0026995 Msrb3 protein_coding protein_coding MGP_C3HHeJ_T0025803.1 MGP_C3HHeJ_G0017217.1 mouse_genomes_project 10 79671441 79678956 + MGP_C3HHeJ_P0025803 Bsg protein_coding protein_coding MGP_C3HHeJ_T0025804.1 MGP_C3HHeJ_G0017217.1 mouse_genomes_project 10 79671478 79678874 + MGP_C3HHeJ_P0025804 Bsg protein_coding protein_coding MGP_C3HHeJ_T0025805.1 MGP_C3HHeJ_G0017217.1 mouse_genomes_project 10 79671486 79677707 + Bsg protein_coding processed_transcript MGP_C3HHeJ_T0025806.1 MGP_C3HHeJ_G0017217.1 mouse_genomes_project 10 79677083 79678689 + Bsg protein_coding retained_intron MGP_C3HHeJ_T0012300.1 MGP_C3HHeJ_G0010404.1 mouse_genomes_project 10 38098604 38099214 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098689.1 MGP_C3HHeJ_G0036883.1 mouse_genomes_project 10 5882182 5882288 + Gm24374 snRNA snRNA MGP_C3HHeJ_T0025269.1 MGP_C3HHeJ_G0017078.1 mouse_genomes_project 10 62517076 62518703 - MGP_C3HHeJ_P0025269 Gm7075 protein_coding protein_coding MGP_C3HHeJ_T0024438.1 MGP_C3HHeJ_G0016801.1 mouse_genomes_project 10 16235741 16399617 - MGP_C3HHeJ_P0024438 Arfgef3 protein_coding protein_coding MGP_C3HHeJ_T0011190.1 MGP_C3HHeJ_G0009323.1 mouse_genomes_project 10 95733905 95734209 + Gm25266 misc_RNA misc_RNA MGP_C3HHeJ_T0098264.1 MGP_C3HHeJ_G0036476.1 mouse_genomes_project 10 130748397 130748528 + Gm26347 scaRNA scaRNA MGP_C3HHeJ_T0026459.1 MGP_C3HHeJ_G0017383.1 mouse_genomes_project 10 87962283 87965127 - MGP_C3HHeJ_P0026459 Ascl1 protein_coding protein_coding MGP_C3HHeJ_T0026479.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88688847 88739296 + MGP_C3HHeJ_P0026479 Ccdc53 protein_coding protein_coding MGP_C3HHeJ_T0026480.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88688900 88707065 + MGP_C3HHeJ_P0026480 Ccdc53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026481.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88688906 88739144 + MGP_C3HHeJ_P0026481 Ccdc53 protein_coding protein_coding MGP_C3HHeJ_T0026482.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88688925 88717033 + MGP_C3HHeJ_P0026482 Ccdc53 protein_coding protein_coding MGP_C3HHeJ_T0026483.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88688938 88706767 + Ccdc53 protein_coding retained_intron MGP_C3HHeJ_T0026484.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88689017 88716812 + MGP_C3HHeJ_P0026484 Ccdc53 protein_coding protein_coding MGP_C3HHeJ_T0026485.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88694702 88727387 + Ccdc53 protein_coding processed_transcript MGP_C3HHeJ_T0026486.1 MGP_C3HHeJ_G0017389.1 mouse_genomes_project 10 88728029 88739145 + Ccdc53 protein_coding processed_transcript MGP_C3HHeJ_T0025587.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76202497 76206478 + Lss protein_coding processed_transcript MGP_C3HHeJ_T0025588.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76202516 76219778 + Lss protein_coding retained_intron MGP_C3HHeJ_T0025589.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76202516 76226389 + MGP_C3HHeJ_P0025589 Lss protein_coding protein_coding MGP_C3HHeJ_T0025590.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76202521 76228048 + Lss protein_coding retained_intron MGP_C3HHeJ_T0025591.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76202591 76206633 + Lss protein_coding retained_intron MGP_C3HHeJ_T0025592.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76212791 76213656 + MGP_C3HHeJ_P0025592 Lss protein_coding protein_coding MGP_C3HHeJ_T0025593.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76222119 76227528 + Lss protein_coding retained_intron MGP_C3HHeJ_T0025594.1 MGP_C3HHeJ_G0017146.1 mouse_genomes_project 10 76223180 76224143 + Lss protein_coding retained_intron MGP_C3HHeJ_T0099979.1 MGP_C3HHeJ_G0038173.1 mouse_genomes_project 10 130373381 130373453 + Mir677 snoRNA snoRNA MGP_C3HHeJ_T0005999.1 MGP_C3HHeJ_G0005014.1 mouse_genomes_project 10 10299777 10306246 - B230208H11Rik lincRNA lincRNA MGP_C3HHeJ_T0006000.1 MGP_C3HHeJ_G0005014.1 mouse_genomes_project 10 10299808 10306236 - B230208H11Rik lincRNA lincRNA MGP_C3HHeJ_T0025553.1 MGP_C3HHeJ_G0017132.1 mouse_genomes_project 10 75528675 75529447 - MGP_C3HHeJ_P0025553 Mmp11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025554.1 MGP_C3HHeJ_G0017132.1 mouse_genomes_project 10 75528675 75537929 - MGP_C3HHeJ_P0025554 Mmp11 protein_coding protein_coding MGP_C3HHeJ_T0025555.1 MGP_C3HHeJ_G0017132.1 mouse_genomes_project 10 75528675 75537956 - MGP_C3HHeJ_P0025555 Mmp11 protein_coding protein_coding MGP_C3HHeJ_T0025556.1 MGP_C3HHeJ_G0017132.1 mouse_genomes_project 10 75528676 75531866 - MGP_C3HHeJ_P0025556 Mmp11 protein_coding protein_coding MGP_C3HHeJ_T0025557.1 MGP_C3HHeJ_G0017132.1 mouse_genomes_project 10 75532213 75533144 - Mmp11 protein_coding retained_intron MGP_C3HHeJ_T0026912.1 MGP_C3HHeJ_G0017517.1 mouse_genomes_project 10 118841074 118940144 - MGP_C3HHeJ_P0026912 Frs2 protein_coding protein_coding MGP_C3HHeJ_T0012277.1 MGP_C3HHeJ_G0010381.1 mouse_genomes_project 10 828042 828351 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099967.1 MGP_C3HHeJ_G0038161.1 mouse_genomes_project 10 107248101 107248223 - Gm25342 snoRNA snoRNA MGP_C3HHeJ_T0101611.1 MGP_C3HHeJ_G0039577.1 mouse_genomes_project 10 4695193 4707596 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0025314.1 MGP_C3HHeJ_G0017091.1 mouse_genomes_project 10 67746534 67862754 - MGP_C3HHeJ_P0025314 1700040L02Rik protein_coding protein_coding MGP_C3HHeJ_T0025315.1 MGP_C3HHeJ_G0017091.1 mouse_genomes_project 10 67751855 67846761 - MGP_C3HHeJ_P0025315 1700040L02Rik protein_coding protein_coding MGP_C3HHeJ_T0000804.1 MGP_C3HHeJ_G0000745.1 mouse_genomes_project 10 119883592 119883942 + TEC TEC MGP_C3HHeJ_T0101107.1 MGP_C3HHeJ_G0039287.1 mouse_genomes_project 10 7941520 7951890 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101108.1 MGP_C3HHeJ_G0039287.1 mouse_genomes_project 10 7948627 7949624 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0025127.1 MGP_C3HHeJ_G0017041.1 mouse_genomes_project 10 60398179 60417674 - MGP_C3HHeJ_P0025127 Eif4ebp2 protein_coding protein_coding MGP_C3HHeJ_T0027249.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130714676 130723003 - MGP_C3HHeJ_P0027249 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0027250.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130714676 130723149 - MGP_C3HHeJ_P0027250 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0027251.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130714755 130722997 - MGP_C3HHeJ_P0027251 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0027252.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130714871 130722118 - Nabp2 protein_coding retained_intron MGP_C3HHeJ_T0027253.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130715181 130722907 - MGP_C3HHeJ_P0027253 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0027254.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130715191 130723826 - MGP_C3HHeJ_P0027254 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0027255.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130721437 130722455 - MGP_C3HHeJ_P0027255 Nabp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027256.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130721993 130724767 - MGP_C3HHeJ_P0027256 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0027257.1 MGP_C3HHeJ_G0017626.1 mouse_genomes_project 10 130722021 130723011 - MGP_C3HHeJ_P0027257 Nabp2 protein_coding protein_coding MGP_C3HHeJ_T0024747.1 MGP_C3HHeJ_G0016918.1 mouse_genomes_project 10 38357470 38385242 - MGP_C3HHeJ_P0024747 Mfsd4b1 protein_coding protein_coding MGP_C3HHeJ_T0024748.1 MGP_C3HHeJ_G0016918.1 mouse_genomes_project 10 38366879 38385133 - Mfsd4b1 protein_coding processed_transcript MGP_C3HHeJ_T0009525.1 MGP_C3HHeJ_G0007658.1 mouse_genomes_project 10 85665597 85665697 - Gm27392 miRNA miRNA MGP_C3HHeJ_T0027037.1 MGP_C3HHeJ_G0017555.1 mouse_genomes_project 10 125241916 125329356 - MGP_C3HHeJ_P0027037 Usp15 protein_coding protein_coding MGP_C3HHeJ_T0025685.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77710123 77767513 - MGP_C3HHeJ_P0025685 Trpm2 protein_coding protein_coding MGP_C3HHeJ_T0025686.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77711566 77765177 - Trpm2 protein_coding processed_transcript MGP_C3HHeJ_T0025687.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77711704 77734166 - Trpm2 protein_coding retained_intron MGP_C3HHeJ_T0025688.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77711762 77735914 - Trpm2 protein_coding retained_intron MGP_C3HHeJ_T0025689.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77718459 77723210 - Trpm2 protein_coding retained_intron MGP_C3HHeJ_T0025690.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77719690 77741171 - Trpm2 protein_coding retained_intron MGP_C3HHeJ_T0025691.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77760509 77767463 - MGP_C3HHeJ_P0025691 Trpm2 protein_coding protein_coding MGP_C3HHeJ_T0025692.1 MGP_C3HHeJ_G0017174.1 mouse_genomes_project 10 77764764 77768222 - Trpm2 protein_coding processed_transcript MGP_C3HHeJ_T0025292.1 MGP_C3HHeJ_G0017084.1 mouse_genomes_project 10 66526247 66544823 - MGP_C3HHeJ_P0025292 Nrbf2 protein_coding protein_coding MGP_C3HHeJ_T0025293.1 MGP_C3HHeJ_G0017084.1 mouse_genomes_project 10 66527398 66544698 - MGP_C3HHeJ_P0025293 Nrbf2 protein_coding protein_coding MGP_C3HHeJ_T0005996.1 MGP_C3HHeJ_G0005012.1 mouse_genomes_project 10 7299554 7463748 + Gm28905 lincRNA lincRNA MGP_C3HHeJ_T0027082.1 MGP_C3HHeJ_G0017573.1 mouse_genomes_project 10 129383996 129389821 - MGP_C3HHeJ_P0027082 Arhgef25 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027083.1 MGP_C3HHeJ_G0017573.1 mouse_genomes_project 10 129383999 129391528 - MGP_C3HHeJ_P0027083 Arhgef25 protein_coding protein_coding MGP_C3HHeJ_T0027084.1 MGP_C3HHeJ_G0017573.1 mouse_genomes_project 10 129383999 129391297 - MGP_C3HHeJ_P0027084 Arhgef25 protein_coding protein_coding MGP_C3HHeJ_T0026692.1 MGP_C3HHeJ_G0017430.1 mouse_genomes_project 10 95464714 95567804 + MGP_C3HHeJ_P0026692 Cep83 protein_coding protein_coding MGP_C3HHeJ_T0101109.1 MGP_C3HHeJ_G0039288.1 mouse_genomes_project 10 26865021 26908277 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101110.1 MGP_C3HHeJ_G0039288.1 mouse_genomes_project 10 26907838 26910168 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0025409.1 MGP_C3HHeJ_G0017104.1 mouse_genomes_project 10 70680312 70711563 - MGP_C3HHeJ_P0025409 Ube2d1 protein_coding protein_coding MGP_C3HHeJ_T0025410.1 MGP_C3HHeJ_G0017104.1 mouse_genomes_project 10 70680991 70682221 - Ube2d1 protein_coding retained_intron MGP_C3HHeJ_T0025411.1 MGP_C3HHeJ_G0017104.1 mouse_genomes_project 10 70683037 70711519 - Ube2d1 protein_coding retained_intron MGP_C3HHeJ_T0099925.1 MGP_C3HHeJ_G0038119.1 mouse_genomes_project 10 9716880 9717090 + Gm25139 snoRNA snoRNA MGP_C3HHeJ_T0024658.1 MGP_C3HHeJ_G0016885.1 mouse_genomes_project 10 31199787 31604169 + MGP_C3HHeJ_P0024658 Trdn protein_coding protein_coding MGP_C3HHeJ_T0024659.1 MGP_C3HHeJ_G0016885.1 mouse_genomes_project 10 31200028 31601978 + MGP_C3HHeJ_P0024659 Trdn protein_coding unknown_likely_coding MGP_C3HHeJ_T0027337.1 MGP_C3HHeJ_G0017663.1 mouse_genomes_project 10 131704075 131705020 + MGP_C3HHeJ_P0027337 Olfr782 protein_coding protein_coding MGP_C3HHeJ_T0006072.1 MGP_C3HHeJ_G0005063.1 mouse_genomes_project 10 100277985 100408574 + B530045E10Rik lincRNA lincRNA MGP_C3HHeJ_T0006073.1 MGP_C3HHeJ_G0005063.1 mouse_genomes_project 10 100406050 100408574 + B530045E10Rik lincRNA lincRNA MGP_C3HHeJ_T0026130.1 MGP_C3HHeJ_G0017298.1 mouse_genomes_project 10 81126275 81146691 - MGP_C3HHeJ_P0026130 Creb3l3 protein_coding protein_coding MGP_C3HHeJ_T0026131.1 MGP_C3HHeJ_G0017298.1 mouse_genomes_project 10 81133005 81140393 - Creb3l3 protein_coding retained_intron MGP_C3HHeJ_T0026132.1 MGP_C3HHeJ_G0017298.1 mouse_genomes_project 10 81133685 81134969 - Creb3l3 protein_coding retained_intron MGP_C3HHeJ_T0026133.1 MGP_C3HHeJ_G0017298.1 mouse_genomes_project 10 81140448 81146571 - Creb3l3 protein_coding processed_transcript MGP_C3HHeJ_T0026196.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425052 81429485 - MGP_C3HHeJ_P0026196 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026197.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425055 81429374 - Hmg20b protein_coding retained_intron MGP_C3HHeJ_T0026198.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425055 81429431 - MGP_C3HHeJ_P0026198 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026199.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425055 81429429 - MGP_C3HHeJ_P0026199 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026200.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425055 81429196 - MGP_C3HHeJ_P0026200 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026201.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425056 81425735 - Hmg20b protein_coding retained_intron MGP_C3HHeJ_T0026202.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425056 81429332 - MGP_C3HHeJ_P0026202 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026203.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81425763 81428090 - MGP_C3HHeJ_P0026203 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026204.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81426001 81429448 - MGP_C3HHeJ_P0026204 Hmg20b protein_coding protein_coding MGP_C3HHeJ_T0026205.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81426002 81426927 - Hmg20b protein_coding retained_intron MGP_C3HHeJ_T0026206.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81428008 81429324 - Hmg20b protein_coding processed_transcript MGP_C3HHeJ_T0026207.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81428050 81429322 - Hmg20b protein_coding retained_intron MGP_C3HHeJ_T0026208.1 MGP_C3HHeJ_G0017316.1 mouse_genomes_project 10 81428060 81429449 - Hmg20b protein_coding processed_transcript MGP_C3HHeJ_T0025767.1 MGP_C3HHeJ_G0017200.1 mouse_genomes_project 10 78887541 78896946 + MGP_C3HHeJ_P0025767 Olfr1351 protein_coding protein_coding MGP_C3HHeJ_T0025768.1 MGP_C3HHeJ_G0017200.1 mouse_genomes_project 10 78895986 78896946 + MGP_C3HHeJ_P0025768 Olfr1351 protein_coding protein_coding MGP_C3HHeJ_T0027384.1 MGP_C3HHeJ_G0017695.1 mouse_genomes_project 10 132397653 132398657 - MGP_C3HHeJ_P0027384 protein_coding protein_coding MGP_C3HHeJ_T0024497.1 MGP_C3HHeJ_G0016821.1 mouse_genomes_project 10 19012558 19028384 + MGP_C3HHeJ_P0024497 Gm9923 protein_coding protein_coding MGP_C3HHeJ_T0101623.1 MGP_C3HHeJ_G0039589.1 mouse_genomes_project 10 132003673 132004088 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000788.1 MGP_C3HHeJ_G0000730.1 mouse_genomes_project 10 62165595 62165937 + TEC TEC MGP_C3HHeJ_T0025331.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68693303 68709607 - MGP_C3HHeJ_P0025331 Cdk1 protein_coding protein_coding MGP_C3HHeJ_T0025332.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68694992 68709572 - MGP_C3HHeJ_P0025332 Cdk1 protein_coding protein_coding MGP_C3HHeJ_T0025333.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68697267 68699398 - Cdk1 protein_coding retained_intron MGP_C3HHeJ_T0025334.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68697398 68702179 - Cdk1 protein_coding retained_intron MGP_C3HHeJ_T0025335.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68697434 68707499 - MGP_C3HHeJ_P0025335 Cdk1 protein_coding protein_coding MGP_C3HHeJ_T0025336.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68697472 68702103 - Cdk1 protein_coding retained_intron MGP_C3HHeJ_T0025337.1 MGP_C3HHeJ_G0017095.1 mouse_genomes_project 10 68701673 68709579 - Cdk1 protein_coding retained_intron MGP_C3HHeJ_T0026943.1 MGP_C3HHeJ_G0017528.1 mouse_genomes_project 10 119676415 119707651 - MGP_C3HHeJ_P0026943 Rap1b protein_coding protein_coding MGP_C3HHeJ_T0027111.1 MGP_C3HHeJ_G0017582.1 mouse_genomes_project 10 129546815 129558428 - MGP_C3HHeJ_P0027111 Gli1 protein_coding protein_coding MGP_C3HHeJ_T0026747.1 MGP_C3HHeJ_G0017460.1 mouse_genomes_project 10 101574423 101587961 - MGP_C3HHeJ_P0026747 4930430F08Rik protein_coding protein_coding MGP_C3HHeJ_T0026834.1 MGP_C3HHeJ_G0017488.1 mouse_genomes_project 10 112945961 112948321 + MGP_C3HHeJ_P0026834 Phlda1 protein_coding protein_coding MGP_C3HHeJ_T0026835.1 MGP_C3HHeJ_G0017488.1 mouse_genomes_project 10 112947371 112947841 + Phlda1 protein_coding processed_transcript MGP_C3HHeJ_T0024757.1 MGP_C3HHeJ_G0016922.1 mouse_genomes_project 10 38658441 38672537 - MGP_C3HHeJ_P0024757 protein_coding unknown_likely_coding MGP_C3HHeJ_T0024758.1 MGP_C3HHeJ_G0016922.1 mouse_genomes_project 10 38658509 38672444 - MGP_C3HHeJ_P0024758 protein_coding protein_coding MGP_C3HHeJ_T0024967.1 MGP_C3HHeJ_G0016995.1 mouse_genomes_project 10 55134727 55144109 + MGP_C3HHeJ_P0024967 Msl3l2 protein_coding protein_coding MGP_C3HHeJ_T0027391.1 MGP_C3HHeJ_G0017701.1 mouse_genomes_project 10 132659968 132664761 - MGP_C3HHeJ_P0027391 Olfr826 protein_coding protein_coding MGP_C3HHeJ_T0024740.1 MGP_C3HHeJ_G0016915.1 mouse_genomes_project 10 38269695 38277476 - MGP_C3HHeJ_P0024740 Mfsd4b2 protein_coding protein_coding MGP_C3HHeJ_T0026720.1 MGP_C3HHeJ_G0017448.1 mouse_genomes_project 10 99882582 99997562 + MGP_C3HHeJ_P0026720 Atp2b1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0026721.1 MGP_C3HHeJ_G0017448.1 mouse_genomes_project 10 99883039 99997563 + MGP_C3HHeJ_P0026721 Atp2b1 protein_coding protein_coding MGP_C3HHeJ_T0025574.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75909556 75915625 - MGP_C3HHeJ_P0025574 Dip2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025575.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75912852 76006587 - MGP_C3HHeJ_P0025575 Dip2a protein_coding protein_coding MGP_C3HHeJ_T0025576.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75913150 75936078 - Dip2a protein_coding retained_intron MGP_C3HHeJ_T0025577.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75913167 76006587 - MGP_C3HHeJ_P0025577 Dip2a protein_coding protein_coding MGP_C3HHeJ_T0025578.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75913167 76006556 - MGP_C3HHeJ_P0025578 Dip2a protein_coding protein_coding MGP_C3HHeJ_T0025579.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75914788 75920688 - Dip2a protein_coding retained_intron MGP_C3HHeJ_T0025580.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75932827 75942680 - MGP_C3HHeJ_P0025580 Dip2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025581.1 MGP_C3HHeJ_G0017141.1 mouse_genomes_project 10 75945497 76006528 - Dip2a protein_coding retained_intron MGP_C3HHeJ_T0025630.1 MGP_C3HHeJ_G0017155.1 mouse_genomes_project 10 76960133 76961581 - MGP_C3HHeJ_P0025630 Gm10941 protein_coding protein_coding MGP_C3HHeJ_T0026109.1 MGP_C3HHeJ_G0017292.1 mouse_genomes_project 10 80973556 80975670 + MGP_C3HHeJ_P0026109 Gadd45b protein_coding protein_coding MGP_C3HHeJ_T0025566.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75851328 75886061 - MGP_C3HHeJ_P0025566 Prmt2 protein_coding protein_coding MGP_C3HHeJ_T0025567.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75851333 75886033 - MGP_C3HHeJ_P0025567 Prmt2 protein_coding protein_coding MGP_C3HHeJ_T0025568.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75851338 75886026 - MGP_C3HHeJ_P0025568 Prmt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025569.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75851338 75886032 - MGP_C3HHeJ_P0025569 Prmt2 protein_coding protein_coding MGP_C3HHeJ_T0025570.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75852082 75886053 - MGP_C3HHeJ_P0025570 Prmt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025571.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75852524 75858553 - Prmt2 protein_coding retained_intron MGP_C3HHeJ_T0025572.1 MGP_C3HHeJ_G0017139.1 mouse_genomes_project 10 75852550 75859956 - Prmt2 protein_coding processed_transcript MGP_C3HHeJ_T0026445.1 MGP_C3HHeJ_G0017378.1 mouse_genomes_project 10 87171575 87241773 + MGP_C3HHeJ_P0026445 Ttc41 protein_coding protein_coding MGP_C3HHeJ_T0026446.1 MGP_C3HHeJ_G0017378.1 mouse_genomes_project 10 87171575 87189835 + MGP_C3HHeJ_P0026446 Ttc41 protein_coding protein_coding MGP_C3HHeJ_T0026910.1 MGP_C3HHeJ_G0017515.1 mouse_genomes_project 10 118814030 118815458 + MGP_C3HHeJ_P0026910 Lrrc10 protein_coding protein_coding MGP_C3HHeJ_T0098731.1 MGP_C3HHeJ_G0036925.1 mouse_genomes_project 10 90438872 90438979 - Gm26180 snRNA snRNA MGP_C3HHeJ_T0012296.1 MGP_C3HHeJ_G0010400.1 mouse_genomes_project 10 24622928 24623940 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0026211.1 MGP_C3HHeJ_G0017318.1 mouse_genomes_project 10 81442081 81443869 - MGP_C3HHeJ_P0026211 4930404N11Rik protein_coding protein_coding MGP_C3HHeJ_T0026212.1 MGP_C3HHeJ_G0017318.1 mouse_genomes_project 10 81442937 81443891 - 4930404N11Rik protein_coding retained_intron MGP_C3HHeJ_T0026213.1 MGP_C3HHeJ_G0017318.1 mouse_genomes_project 10 81443038 81444831 - MGP_C3HHeJ_P0026213 4930404N11Rik protein_coding protein_coding MGP_C3HHeJ_T0026214.1 MGP_C3HHeJ_G0017318.1 mouse_genomes_project 10 81443061 81444805 - 4930404N11Rik protein_coding retained_intron MGP_C3HHeJ_T0099977.1 MGP_C3HHeJ_G0038171.1 mouse_genomes_project 10 130207658 130207789 - Gm23996 snoRNA snoRNA MGP_C3HHeJ_T0025316.1 MGP_C3HHeJ_G0017092.1 mouse_genomes_project 10 68054523 68110366 + MGP_C3HHeJ_P0025316 Tmem26 protein_coding protein_coding MGP_C3HHeJ_T0016910.1 MGP_C3HHeJ_G0014902.1 mouse_genomes_project 10 122899345 122905042 + Gm15910 processed_transcript processed_transcript MGP_C3HHeJ_T0027194.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130371365 130379192 + MGP_C3HHeJ_P0027194 Atp5b protein_coding protein_coding MGP_C3HHeJ_T0027195.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130371398 130372179 + Atp5b protein_coding processed_transcript MGP_C3HHeJ_T0027196.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130372525 130374042 + Atp5b protein_coding retained_intron MGP_C3HHeJ_T0027197.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130373838 130378961 + Atp5b protein_coding retained_intron MGP_C3HHeJ_T0027198.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130374322 130377953 + Atp5b protein_coding processed_transcript MGP_C3HHeJ_T0027199.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130376481 130377852 + Atp5b protein_coding retained_intron MGP_C3HHeJ_T0027200.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130377291 130378482 + Atp5b protein_coding retained_intron MGP_C3HHeJ_T0027201.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130377352 130379074 + Atp5b protein_coding processed_transcript MGP_C3HHeJ_T0027202.1 MGP_C3HHeJ_G0017609.1 mouse_genomes_project 10 130377841 130379073 + Atp5b protein_coding processed_transcript MGP_C3HHeJ_T0025884.1 MGP_C3HHeJ_G0017236.1 mouse_genomes_project 10 79939968 79949020 + MGP_C3HHeJ_P0025884 Wdr18 protein_coding protein_coding MGP_C3HHeJ_T0026439.1 MGP_C3HHeJ_G0017376.1 mouse_genomes_project 10 86984933 86986385 - MGP_C3HHeJ_P0026439 Gm6729 protein_coding protein_coding MGP_C3HHeJ_T0024902.1 MGP_C3HHeJ_G0016970.1 mouse_genomes_project 10 44022320 44118713 - MGP_C3HHeJ_P0024902 Lin28b protein_coding protein_coding MGP_C3HHeJ_T0024903.1 MGP_C3HHeJ_G0016970.1 mouse_genomes_project 10 44026765 44117971 - MGP_C3HHeJ_P0024903 Lin28b protein_coding unknown_likely_coding MGP_C3HHeJ_T0027378.1 MGP_C3HHeJ_G0017691.1 mouse_genomes_project 10 132326477 132327537 - MGP_C3HHeJ_P0027378 Olfr814 protein_coding protein_coding MGP_C3HHeJ_T0027379.1 MGP_C3HHeJ_G0017691.1 mouse_genomes_project 10 132326477 132327519 - MGP_C3HHeJ_P0027379 Olfr814 protein_coding protein_coding MGP_C3HHeJ_T0025338.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898585 69253036 + protein_coding retained_intron MGP_C3HHeJ_T0025339.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898585 69092957 + protein_coding processed_transcript MGP_C3HHeJ_T0025340.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898585 69417236 + MGP_C3HHeJ_P0025340 protein_coding protein_coding MGP_C3HHeJ_T0025341.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898628 69230671 + protein_coding retained_intron MGP_C3HHeJ_T0025342.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898656 69414445 + MGP_C3HHeJ_P0025342 protein_coding protein_coding MGP_C3HHeJ_T0025343.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898660 69414701 + MGP_C3HHeJ_P0025343 protein_coding protein_coding MGP_C3HHeJ_T0025344.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898660 69414701 + MGP_C3HHeJ_P0025344 protein_coding protein_coding MGP_C3HHeJ_T0025345.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68898878 69204279 + MGP_C3HHeJ_P0025345 protein_coding protein_coding MGP_C3HHeJ_T0025346.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68899021 69413689 + MGP_C3HHeJ_P0025346 protein_coding protein_coding MGP_C3HHeJ_T0025347.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68899035 69405448 + MGP_C3HHeJ_P0025347 protein_coding protein_coding MGP_C3HHeJ_T0025348.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68899035 69405448 + MGP_C3HHeJ_P0025348 protein_coding protein_coding MGP_C3HHeJ_T0025349.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68899035 69405448 + MGP_C3HHeJ_P0025349 protein_coding protein_coding MGP_C3HHeJ_T0025350.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68899035 69405448 + MGP_C3HHeJ_P0025350 protein_coding protein_coding MGP_C3HHeJ_T0025351.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 68899035 69405448 + MGP_C3HHeJ_P0025351 protein_coding protein_coding MGP_C3HHeJ_T0025352.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69078567 69082746 + protein_coding retained_intron MGP_C3HHeJ_T0025353.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69078639 69405446 + MGP_C3HHeJ_P0025353 protein_coding protein_coding MGP_C3HHeJ_T0025354.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69078743 69385079 + protein_coding retained_intron MGP_C3HHeJ_T0025355.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69078747 69201834 + protein_coding retained_intron MGP_C3HHeJ_T0025356.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69160166 69189085 + protein_coding retained_intron MGP_C3HHeJ_T0025357.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69160177 69239099 + MGP_C3HHeJ_P0025357 protein_coding protein_coding MGP_C3HHeJ_T0025358.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69162101 69230092 + MGP_C3HHeJ_P0025358 protein_coding protein_coding MGP_C3HHeJ_T0025359.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69281709 69413744 + MGP_C3HHeJ_P0025359 protein_coding protein_coding MGP_C3HHeJ_T0025360.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69282647 69361164 + MGP_C3HHeJ_P0025360 protein_coding protein_coding MGP_C3HHeJ_T0025361.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69299092 69338239 + protein_coding retained_intron MGP_C3HHeJ_T0025362.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310674 69311518 + protein_coding retained_intron MGP_C3HHeJ_T0025363.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310674 69413780 + MGP_C3HHeJ_P0025363 protein_coding protein_coding MGP_C3HHeJ_T0025364.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310711 69414773 + MGP_C3HHeJ_P0025364 protein_coding protein_coding MGP_C3HHeJ_T0025365.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310952 69414701 + MGP_C3HHeJ_P0025365 protein_coding protein_coding MGP_C3HHeJ_T0025366.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310952 69414701 + MGP_C3HHeJ_P0025366 protein_coding protein_coding MGP_C3HHeJ_T0025367.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310952 69414701 + MGP_C3HHeJ_P0025367 protein_coding protein_coding MGP_C3HHeJ_T0025368.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310984 69405620 + MGP_C3HHeJ_P0025368 protein_coding protein_coding MGP_C3HHeJ_T0025369.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69310998 69384349 + protein_coding retained_intron MGP_C3HHeJ_T0025370.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69311133 69414462 + MGP_C3HHeJ_P0025370 protein_coding protein_coding MGP_C3HHeJ_T0025371.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69311259 69414445 + MGP_C3HHeJ_P0025371 protein_coding protein_coding MGP_C3HHeJ_T0025372.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69311312 69413818 + MGP_C3HHeJ_P0025372 protein_coding protein_coding MGP_C3HHeJ_T0025373.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69361075 69372145 + protein_coding retained_intron MGP_C3HHeJ_T0025374.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69368312 69389277 + MGP_C3HHeJ_P0025374 protein_coding protein_coding MGP_C3HHeJ_T0025375.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69369203 69375949 + MGP_C3HHeJ_P0025375 protein_coding protein_coding MGP_C3HHeJ_T0025376.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69370161 69414701 + MGP_C3HHeJ_P0025376 protein_coding protein_coding MGP_C3HHeJ_T0025377.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69371966 69389482 + protein_coding retained_intron MGP_C3HHeJ_T0025378.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69377687 69414447 + MGP_C3HHeJ_P0025378 protein_coding protein_coding MGP_C3HHeJ_T0025379.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69379773 69414266 + MGP_C3HHeJ_P0025379 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0025380.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69381929 69387947 + MGP_C3HHeJ_P0025380 protein_coding protein_coding MGP_C3HHeJ_T0025381.1 MGP_C3HHeJ_G0017096.1 mouse_genomes_project 10 69384141 69394502 + protein_coding retained_intron MGP_C3HHeJ_T0098745.1 MGP_C3HHeJ_G0036939.1 mouse_genomes_project 10 114502749 114502909 + Gm22507 snRNA snRNA MGP_C3HHeJ_T0098715.1 MGP_C3HHeJ_G0036909.1 mouse_genomes_project 10 57152427 57152534 - Gm23058 snRNA snRNA MGP_C3HHeJ_T0027239.1 MGP_C3HHeJ_G0017620.1 mouse_genomes_project 10 130614868 130634841 + MGP_C3HHeJ_P0027239 Pan2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027240.1 MGP_C3HHeJ_G0017620.1 mouse_genomes_project 10 130614873 130634847 + MGP_C3HHeJ_P0027240 Pan2 protein_coding protein_coding MGP_C3HHeJ_T0024552.1 MGP_C3HHeJ_G0016850.1 mouse_genomes_project 10 22019930 22061050 + MGP_C3HHeJ_P0024552 Stx7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0098695.1 MGP_C3HHeJ_G0036889.1 mouse_genomes_project 10 21015215 21015322 - Gm24655 snRNA snRNA MGP_C3HHeJ_T0097983.1 MGP_C3HHeJ_G0036195.1 mouse_genomes_project 10 89238890 89239006 - n-R5s79 rRNA rRNA MGP_C3HHeJ_T0024738.1 MGP_C3HHeJ_G0016914.1 mouse_genomes_project 10 38237167 38243928 - MGP_C3HHeJ_P0024738 Mfsd4b4 protein_coding protein_coding MGP_C3HHeJ_T0024739.1 MGP_C3HHeJ_G0016914.1 mouse_genomes_project 10 38237167 38247345 - MGP_C3HHeJ_P0024739 Mfsd4b4 protein_coding protein_coding MGP_C3HHeJ_T0025501.1 MGP_C3HHeJ_G0017117.1 mouse_genomes_project 10 75094905 75114725 + MGP_C3HHeJ_P0025501 Snrpd3 protein_coding protein_coding MGP_C3HHeJ_T0025502.1 MGP_C3HHeJ_G0017117.1 mouse_genomes_project 10 75095368 75097221 + Snrpd3 protein_coding retained_intron MGP_C3HHeJ_T0024543.1 MGP_C3HHeJ_G0016841.1 mouse_genomes_project 10 21831740 21832778 - MGP_C3HHeJ_P0024543 Taar6 protein_coding protein_coding MGP_C3HHeJ_T0026055.1 MGP_C3HHeJ_G0017270.1 mouse_genomes_project 10 80581962 80592132 - MGP_C3HHeJ_P0026055 Klf16 protein_coding protein_coding MGP_C3HHeJ_T0026365.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83909846 83960287 - MGP_C3HHeJ_P0026365 Appl2 protein_coding protein_coding MGP_C3HHeJ_T0026366.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83910210 83912944 - MGP_C3HHeJ_P0026366 Appl2 protein_coding protein_coding MGP_C3HHeJ_T0026367.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83910555 83920321 - MGP_C3HHeJ_P0026367 Appl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026368.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83911717 83913198 - Appl2 protein_coding retained_intron MGP_C3HHeJ_T0026369.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83912580 83923196 - Appl2 protein_coding retained_intron MGP_C3HHeJ_T0026370.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83912684 83922581 - Appl2 protein_coding retained_intron MGP_C3HHeJ_T0026371.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83916349 83960219 - Appl2 protein_coding retained_intron MGP_C3HHeJ_T0026372.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83916469 83923043 - Appl2 protein_coding retained_intron MGP_C3HHeJ_T0026373.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83919919 83922415 - Appl2 protein_coding retained_intron MGP_C3HHeJ_T0026374.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83925573 83939615 - Appl2 protein_coding processed_transcript MGP_C3HHeJ_T0026375.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83928733 83960214 - MGP_C3HHeJ_P0026375 Appl2 protein_coding protein_coding MGP_C3HHeJ_T0026376.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83932027 83960152 - MGP_C3HHeJ_P0026376 Appl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026377.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83932141 83948875 - Appl2 protein_coding processed_transcript MGP_C3HHeJ_T0026378.1 MGP_C3HHeJ_G0017353.1 mouse_genomes_project 10 83935960 83960224 - MGP_C3HHeJ_P0026378 Appl2 protein_coding protein_coding MGP_C3HHeJ_T0027271.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130863730 130864922 - MGP_C3HHeJ_P0027271 protein_coding protein_coding MGP_C3HHeJ_T0027272.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130863730 130864770 - MGP_C3HHeJ_P0027272 protein_coding protein_coding MGP_C3HHeJ_T0027273.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130863730 130864779 - MGP_C3HHeJ_P0027273 protein_coding protein_coding MGP_C3HHeJ_T0027274.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130863733 130864755 - protein_coding retained_intron MGP_C3HHeJ_T0027275.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130863736 130864719 - MGP_C3HHeJ_P0027275 protein_coding protein_coding MGP_C3HHeJ_T0027276.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130863737 130864776 - protein_coding retained_intron MGP_C3HHeJ_T0027277.1 MGP_C3HHeJ_G0017633.1 mouse_genomes_project 10 130864092 130864729 - protein_coding retained_intron MGP_C3HHeJ_T0024643.1 MGP_C3HHeJ_G0016879.1 mouse_genomes_project 10 28908191 28919181 - MGP_C3HHeJ_P0024643 Hey2 protein_coding protein_coding MGP_C3HHeJ_T0024644.1 MGP_C3HHeJ_G0016879.1 mouse_genomes_project 10 28909568 28919057 - MGP_C3HHeJ_P0024644 Hey2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009512.1 MGP_C3HHeJ_G0007645.1 mouse_genomes_project 10 78383032 78383154 + Gm27541 miRNA miRNA MGP_C3HHeJ_T0006033.1 MGP_C3HHeJ_G0005040.1 mouse_genomes_project 10 66154927 66163190 - 1110002J07Rik lincRNA lincRNA MGP_C3HHeJ_T0098690.1 MGP_C3HHeJ_G0036884.1 mouse_genomes_project 10 7413126 7413290 + Gm25682 snRNA snRNA MGP_C3HHeJ_T0024742.1 MGP_C3HHeJ_G0016917.1 mouse_genomes_project 10 38313531 38342495 - MGP_C3HHeJ_P0024742 Mfsd4b5 protein_coding protein_coding MGP_C3HHeJ_T0024743.1 MGP_C3HHeJ_G0016917.1 mouse_genomes_project 10 38324532 38342498 - MGP_C3HHeJ_P0024743 Mfsd4b5 protein_coding protein_coding MGP_C3HHeJ_T0024744.1 MGP_C3HHeJ_G0016917.1 mouse_genomes_project 10 38326515 38342491 - MGP_C3HHeJ_P0024744 Mfsd4b5 protein_coding protein_coding MGP_C3HHeJ_T0024745.1 MGP_C3HHeJ_G0016917.1 mouse_genomes_project 10 38329521 38342492 - MGP_C3HHeJ_P0024745 Mfsd4b5 protein_coding protein_coding MGP_C3HHeJ_T0024746.1 MGP_C3HHeJ_G0016917.1 mouse_genomes_project 10 38330496 38331150 - MGP_C3HHeJ_P0024746 Mfsd4b5 protein_coding protein_coding MGP_C3HHeJ_T0027066.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254207 129259072 + MGP_C3HHeJ_P0027066 Cdk4 protein_coding protein_coding MGP_C3HHeJ_T0027067.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254276 129257676 + MGP_C3HHeJ_P0027067 Cdk4 protein_coding protein_coding MGP_C3HHeJ_T0027068.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254277 129256851 + MGP_C3HHeJ_P0027068 Cdk4 protein_coding protein_coding MGP_C3HHeJ_T0027069.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254282 129257676 + MGP_C3HHeJ_P0027069 Cdk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027070.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254287 129258447 + Cdk4 protein_coding retained_intron MGP_C3HHeJ_T0027071.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254289 129255954 + Cdk4 protein_coding retained_intron MGP_C3HHeJ_T0027072.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254541 129256905 + MGP_C3HHeJ_P0027072 Cdk4 protein_coding protein_coding MGP_C3HHeJ_T0027073.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129254971 129255989 + Cdk4 protein_coding retained_intron MGP_C3HHeJ_T0027074.1 MGP_C3HHeJ_G0017567.1 mouse_genomes_project 10 129256749 129258385 + Cdk4 protein_coding retained_intron MGP_C3HHeJ_T0026331.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82893762 82935328 - MGP_C3HHeJ_P0026331 Glt8d2 protein_coding protein_coding MGP_C3HHeJ_T0026332.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82894635 82896797 - Glt8d2 protein_coding retained_intron MGP_C3HHeJ_T0026333.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82894888 82902983 - MGP_C3HHeJ_P0026333 Glt8d2 protein_coding protein_coding MGP_C3HHeJ_T0026334.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82896125 82935295 - MGP_C3HHeJ_P0026334 Glt8d2 protein_coding protein_coding MGP_C3HHeJ_T0026335.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82898377 82935295 - MGP_C3HHeJ_P0026335 Glt8d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026336.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82908078 82913907 - MGP_C3HHeJ_P0026336 Glt8d2 protein_coding protein_coding MGP_C3HHeJ_T0026337.1 MGP_C3HHeJ_G0017343.1 mouse_genomes_project 10 82912693 82935307 - Glt8d2 protein_coding retained_intron MGP_C3HHeJ_T0009485.1 MGP_C3HHeJ_G0007618.1 mouse_genomes_project 10 20593187 20593248 - Mir7663 miRNA miRNA MGP_C3HHeJ_T0006062.1 MGP_C3HHeJ_G0005057.1 mouse_genomes_project 10 92846565 92849134 + Gm26700 lincRNA lincRNA MGP_C3HHeJ_T0098722.1 MGP_C3HHeJ_G0036916.1 mouse_genomes_project 10 79885524 79885631 + Gm24019 snRNA snRNA MGP_C3HHeJ_T0097833.1 MGP_C3HHeJ_G0036045.1 mouse_genomes_project 10 15644591 15644828 + pseudogene pseudogene MGP_C3HHeJ_T0025169.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61282398 61358476 - MGP_C3HHeJ_P0025169 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025170.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61282647 61398626 - MGP_C3HHeJ_P0025170 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025171.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61282651 61376328 - MGP_C3HHeJ_P0025171 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025172.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61283452 61360656 - MGP_C3HHeJ_P0025172 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025173.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61301200 61306641 - Hk1 protein_coding retained_intron MGP_C3HHeJ_T0025174.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61312151 61335794 - MGP_C3HHeJ_P0025174 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025175.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61312384 61345710 - MGP_C3HHeJ_P0025175 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025176.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61312985 61360633 - MGP_C3HHeJ_P0025176 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025177.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61313230 61360642 - Hk1 protein_coding retained_intron MGP_C3HHeJ_T0025178.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61398570 - MGP_C3HHeJ_P0025178 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025179.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025179 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025180.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61398570 - MGP_C3HHeJ_P0025180 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025181.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025181 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025182.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025182 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025183.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025183 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025184.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025184 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025185.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025185 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025186.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61398570 - MGP_C3HHeJ_P0025186 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025187.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332876 61393814 - MGP_C3HHeJ_P0025187 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0025188.1 MGP_C3HHeJ_G0017056.1 mouse_genomes_project 10 61332921 61380240 - MGP_C3HHeJ_P0025188 Hk1 protein_coding protein_coding MGP_C3HHeJ_T0009554.1 MGP_C3HHeJ_G0007687.1 mouse_genomes_project 10 130691201 130691270 - Gm26308 miRNA miRNA MGP_C3HHeJ_T0006003.1 MGP_C3HHeJ_G0005017.1 mouse_genomes_project 10 15884304 15888463 + lincRNA lincRNA MGP_C3HHeJ_T0027374.1 MGP_C3HHeJ_G0017688.1 mouse_genomes_project 10 132192165 132194264 - MGP_C3HHeJ_P0027374 Olfr810 protein_coding protein_coding MGP_C3HHeJ_T0026009.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80336636 80338745 - Adamtsl5 protein_coding processed_transcript MGP_C3HHeJ_T0026010.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80338452 80347044 - Adamtsl5 protein_coding retained_intron MGP_C3HHeJ_T0026011.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80338480 80344800 - Adamtsl5 protein_coding retained_intron MGP_C3HHeJ_T0026012.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80339500 80347044 - Adamtsl5 protein_coding retained_intron MGP_C3HHeJ_T0026013.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80339500 80347044 - MGP_C3HHeJ_P0026013 Adamtsl5 protein_coding protein_coding MGP_C3HHeJ_T0026014.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80341398 80347044 - MGP_C3HHeJ_P0026014 Adamtsl5 protein_coding protein_coding MGP_C3HHeJ_T0026015.1 MGP_C3HHeJ_G0017261.1 mouse_genomes_project 10 80341665 80343919 - Adamtsl5 protein_coding processed_transcript MGP_C3HHeJ_T0024405.1 MGP_C3HHeJ_G0016791.1 mouse_genomes_project 10 12177142 12184041 - MGP_C3HHeJ_P0024405 Gje1 protein_coding protein_coding MGP_C3HHeJ_T0101615.1 MGP_C3HHeJ_G0039581.1 mouse_genomes_project 10 78376378 78377316 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0026634.1 MGP_C3HHeJ_G0017418.1 mouse_genomes_project 10 94284043 94328764 + MGP_C3HHeJ_P0026634 Ccdc38 protein_coding protein_coding MGP_C3HHeJ_T0026635.1 MGP_C3HHeJ_G0017418.1 mouse_genomes_project 10 94293398 94298639 + Ccdc38 protein_coding retained_intron MGP_C3HHeJ_T0026636.1 MGP_C3HHeJ_G0017418.1 mouse_genomes_project 10 94297942 94298684 + Ccdc38 protein_coding retained_intron MGP_C3HHeJ_T0026637.1 MGP_C3HHeJ_G0017418.1 mouse_genomes_project 10 94297945 94327479 + Ccdc38 protein_coding processed_transcript MGP_C3HHeJ_T0026638.1 MGP_C3HHeJ_G0017418.1 mouse_genomes_project 10 94309336 94318501 + Ccdc38 protein_coding processed_transcript MGP_C3HHeJ_T0024611.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660081 26867915 + MGP_C3HHeJ_P0024611 Themis protein_coding protein_coding MGP_C3HHeJ_T0024612.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660081 26773467 + MGP_C3HHeJ_P0024612 Themis protein_coding protein_coding MGP_C3HHeJ_T0024613.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660116 26750646 + Themis protein_coding retained_intron MGP_C3HHeJ_T0024614.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660118 26781323 + MGP_C3HHeJ_P0024614 Themis protein_coding protein_coding MGP_C3HHeJ_T0024615.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660348 26867918 + MGP_C3HHeJ_P0024615 Themis protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0024616.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660354 26764682 + MGP_C3HHeJ_P0024616 Themis protein_coding protein_coding MGP_C3HHeJ_T0024617.1 MGP_C3HHeJ_G0016867.1 mouse_genomes_project 10 26660354 26725960 + MGP_C3HHeJ_P0024617 Themis protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0026874.1 MGP_C3HHeJ_G0017505.1 mouse_genomes_project 10 117525418 117562468 + MGP_C3HHeJ_P0026874 Tspan8 protein_coding protein_coding MGP_C3HHeJ_T0026875.1 MGP_C3HHeJ_G0017505.1 mouse_genomes_project 10 117525418 117562468 + MGP_C3HHeJ_P0026875 Tspan8 protein_coding protein_coding MGP_C3HHeJ_T0026876.1 MGP_C3HHeJ_G0017505.1 mouse_genomes_project 10 117525418 117562468 + MGP_C3HHeJ_P0026876 Tspan8 protein_coding protein_coding MGP_C3HHeJ_T0012341.1 MGP_C3HHeJ_G0010445.1 mouse_genomes_project 10 132582160 132583131 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0025601.1 MGP_C3HHeJ_G0017149.1 mouse_genomes_project 10 76269674 76301754 - MGP_C3HHeJ_P0025601 Col6a2 protein_coding protein_coding MGP_C3HHeJ_T0025602.1 MGP_C3HHeJ_G0017149.1 mouse_genomes_project 10 76271747 76301449 - MGP_C3HHeJ_P0025602 Col6a2 protein_coding protein_coding MGP_C3HHeJ_T0025603.1 MGP_C3HHeJ_G0017149.1 mouse_genomes_project 10 76274923 76301449 - Col6a2 protein_coding retained_intron MGP_C3HHeJ_T0025563.1 MGP_C3HHeJ_G0017136.1 mouse_genomes_project 10 75649725 75661997 + MGP_C3HHeJ_P0025563 Zfp280b protein_coding protein_coding MGP_C3HHeJ_T0002996.1 MGP_C3HHeJ_G0002800.1 mouse_genomes_project 10 81374239 81375456 - Gm16315 antisense antisense MGP_C3HHeJ_T0099973.1 MGP_C3HHeJ_G0038167.1 mouse_genomes_project 10 118070145 118070282 + Gm26495 snoRNA snoRNA MGP_C3HHeJ_T0026499.1 MGP_C3HHeJ_G0017393.1 mouse_genomes_project 10 88957019 88970632 + MGP_C3HHeJ_P0026499 Sycp3 protein_coding protein_coding MGP_C3HHeJ_T0026500.1 MGP_C3HHeJ_G0017393.1 mouse_genomes_project 10 88957114 88970633 + MGP_C3HHeJ_P0026500 Sycp3 protein_coding protein_coding MGP_C3HHeJ_T0026501.1 MGP_C3HHeJ_G0017393.1 mouse_genomes_project 10 88957114 88970633 + MGP_C3HHeJ_P0026501 Sycp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027001.1 MGP_C3HHeJ_G0017543.1 mouse_genomes_project 10 123335162 123386638 - MGP_C3HHeJ_P0027001 Tbc1d30 protein_coding protein_coding MGP_C3HHeJ_T0026906.1 MGP_C3HHeJ_G0017512.1 mouse_genomes_project 10 118666997 118712553 - MGP_C3HHeJ_P0026906 Rab3ip protein_coding unknown_likely_coding MGP_C3HHeJ_T0026907.1 MGP_C3HHeJ_G0017512.1 mouse_genomes_project 10 118667004 118712651 - MGP_C3HHeJ_P0026907 Rab3ip protein_coding protein_coding MGP_C3HHeJ_T0024309.1 MGP_C3HHeJ_G0016770.1 mouse_genomes_project 10 7890009 7904235 - MGP_C3HHeJ_P0024309 Rab32 protein_coding protein_coding MGP_C3HHeJ_T0097985.1 MGP_C3HHeJ_G0036197.1 mouse_genomes_project 10 106977618 106977729 - n-R5s80 rRNA rRNA MGP_C3HHeJ_T0024921.1 MGP_C3HHeJ_G0016975.1 mouse_genomes_project 10 50420462 50425523 - MGP_C3HHeJ_P0024921 Fam162b protein_coding protein_coding MGP_C3HHeJ_T0009520.1 MGP_C3HHeJ_G0007653.1 mouse_genomes_project 10 81153274 81153334 + Mir5615-2 miRNA miRNA MGP_C3HHeJ_T0026522.1 MGP_C3HHeJ_G0017397.1 mouse_genomes_project 10 89285809 89372436 - MGP_C3HHeJ_P0026522 Utp20 protein_coding protein_coding MGP_C3HHeJ_T0026643.1 MGP_C3HHeJ_G0017422.1 mouse_genomes_project 10 94570068 94587652 + MGP_C3HHeJ_P0026643 Usp44 protein_coding protein_coding MGP_C3HHeJ_T0098711.1 MGP_C3HHeJ_G0036905.1 mouse_genomes_project 10 51780358 51780465 + Gm25664 snRNA snRNA MGP_C3HHeJ_T0025677.1 MGP_C3HHeJ_G0017168.1 mouse_genomes_project 10 77444714 77445077 + MGP_C3HHeJ_P0025677 Gm10100 protein_coding protein_coding MGP_C3HHeJ_T0024310.1 MGP_C3HHeJ_G0016771.1 mouse_genomes_project 10 8012257 8012768 + MGP_C3HHeJ_P0024310 Gm10944 protein_coding protein_coding MGP_C3HHeJ_T0025060.1 MGP_C3HHeJ_G0017025.1 mouse_genomes_project 10 58884026 58984479 + MGP_C3HHeJ_P0025060 Ascc1 protein_coding protein_coding MGP_C3HHeJ_T0025061.1 MGP_C3HHeJ_G0017025.1 mouse_genomes_project 10 58884548 58984479 + MGP_C3HHeJ_P0025061 Ascc1 protein_coding protein_coding MGP_C3HHeJ_T0027139.1 MGP_C3HHeJ_G0017587.1 mouse_genomes_project 10 129748895 129751138 + MGP_C3HHeJ_P0027139 Ndufa4l2 protein_coding protein_coding MGP_C3HHeJ_T0024440.1 MGP_C3HHeJ_G0016803.1 mouse_genomes_project 10 16501180 16513114 + MGP_C3HHeJ_P0024440 Perp protein_coding protein_coding MGP_C3HHeJ_T0016912.1 MGP_C3HHeJ_G0014904.1 mouse_genomes_project 10 129502257 129503286 - Gm4189 processed_transcript retained_intron MGP_C3HHeJ_T0016913.1 MGP_C3HHeJ_G0014904.1 mouse_genomes_project 10 129502257 129503350 - Gm4189 processed_transcript processed_transcript MGP_C3HHeJ_T0011176.1 MGP_C3HHeJ_G0009309.1 mouse_genomes_project 10 41001988 41002312 - Gm25277 misc_RNA misc_RNA MGP_C3HHeJ_T0027370.1 MGP_C3HHeJ_G0017686.1 mouse_genomes_project 10 132166096 132169050 + MGP_C3HHeJ_P0027370 Olfr808 protein_coding protein_coding MGP_C3HHeJ_T0027371.1 MGP_C3HHeJ_G0017686.1 mouse_genomes_project 10 132168111 132169050 + MGP_C3HHeJ_P0027371 Olfr808 protein_coding protein_coding MGP_C3HHeJ_T0026916.1 MGP_C3HHeJ_G0017520.1 mouse_genomes_project 10 119055741 119057982 + MGP_C3HHeJ_P0026916 Gm10936 protein_coding protein_coding MGP_C3HHeJ_T0088419.1 MGP_C3HHeJ_G0033290.1 mouse_genomes_project 8 47059150 47061862 + MGP_C3HHeJ_P0088419 protein_coding protein_coding MGP_C3HHeJ_T0089242.1 MGP_C3HHeJ_G0033547.1 mouse_genomes_project 8 84825014 84832371 - MGP_C3HHeJ_P0089242 Mri1 protein_coding protein_coding MGP_C3HHeJ_T0089243.1 MGP_C3HHeJ_G0033547.1 mouse_genomes_project 8 84826129 84831460 - MGP_C3HHeJ_P0089243 Mri1 protein_coding protein_coding MGP_C3HHeJ_T0089244.1 MGP_C3HHeJ_G0033547.1 mouse_genomes_project 8 84828963 84832294 - MGP_C3HHeJ_P0089244 Mri1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089245.1 MGP_C3HHeJ_G0033547.1 mouse_genomes_project 8 84829277 84832373 - Mri1 protein_coding processed_transcript MGP_C3HHeJ_T0089246.1 MGP_C3HHeJ_G0033547.1 mouse_genomes_project 8 84830836 84832373 - Mri1 protein_coding retained_intron MGP_C3HHeJ_T0009016.1 MGP_C3HHeJ_G0007243.1 mouse_genomes_project 8 45902740 45911281 - lincRNA lincRNA MGP_C3HHeJ_T0090216.1 MGP_C3HHeJ_G0033869.1 mouse_genomes_project 8 121929478 121980019 - MGP_C3HHeJ_P0090216 Mbtps1 protein_coding protein_coding MGP_C3HHeJ_T0090217.1 MGP_C3HHeJ_G0033869.1 mouse_genomes_project 8 121929478 121980019 - MGP_C3HHeJ_P0090217 Mbtps1 protein_coding protein_coding MGP_C3HHeJ_T0015783.1 MGP_C3HHeJ_G0013887.1 mouse_genomes_project 8 77162485 77163278 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087713.1 MGP_C3HHeJ_G0033054.1 mouse_genomes_project 8 9200011 9216450 + MGP_C3HHeJ_P0087713 Tex29 protein_coding protein_coding MGP_C3HHeJ_T0087714.1 MGP_C3HHeJ_G0033054.1 mouse_genomes_project 8 9200148 9203696 + Tex29 protein_coding processed_transcript MGP_C3HHeJ_T0087715.1 MGP_C3HHeJ_G0033054.1 mouse_genomes_project 8 9200456 9216394 + MGP_C3HHeJ_P0087715 Tex29 protein_coding protein_coding MGP_C3HHeJ_T0087716.1 MGP_C3HHeJ_G0033054.1 mouse_genomes_project 8 9201598 9216446 + Tex29 protein_coding processed_transcript MGP_C3HHeJ_T0088290.1 MGP_C3HHeJ_G0033255.1 mouse_genomes_project 8 42507328 42526924 - MGP_C3HHeJ_P0088290 Adam26a protein_coding protein_coding MGP_C3HHeJ_T0087824.1 MGP_C3HHeJ_G0033084.1 mouse_genomes_project 8 11374238 11375036 + MGP_C3HHeJ_P0087824 protein_coding protein_coding MGP_C3HHeJ_T0009066.1 MGP_C3HHeJ_G0007282.1 mouse_genomes_project 8 92616394 92623540 + Irx3os lincRNA lincRNA MGP_C3HHeJ_T0009067.1 MGP_C3HHeJ_G0007282.1 mouse_genomes_project 8 92618154 92621216 + Irx3os lincRNA lincRNA MGP_C3HHeJ_T0015773.1 MGP_C3HHeJ_G0013877.1 mouse_genomes_project 8 58331817 58332759 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088709.1 MGP_C3HHeJ_G0033381.1 mouse_genomes_project 8 70091694 70099948 + MGP_C3HHeJ_P0088709 protein_coding protein_coding MGP_C3HHeJ_T0088710.1 MGP_C3HHeJ_G0033381.1 mouse_genomes_project 8 70091896 70098234 + protein_coding retained_intron MGP_C3HHeJ_T0088711.1 MGP_C3HHeJ_G0033381.1 mouse_genomes_project 8 70091900 70125108 + MGP_C3HHeJ_P0088711 protein_coding protein_coding MGP_C3HHeJ_T0088712.1 MGP_C3HHeJ_G0033381.1 mouse_genomes_project 8 70091902 70098248 + MGP_C3HHeJ_P0088712 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088713.1 MGP_C3HHeJ_G0033381.1 mouse_genomes_project 8 70091912 70099953 + MGP_C3HHeJ_P0088713 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088714.1 MGP_C3HHeJ_G0033381.1 mouse_genomes_project 8 70092466 70100011 + MGP_C3HHeJ_P0088714 protein_coding protein_coding MGP_C3HHeJ_T0002302.1 MGP_C3HHeJ_G0002221.1 mouse_genomes_project 8 122548224 122549749 + TEC TEC MGP_C3HHeJ_T0090398.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023249 125095671 - MGP_C3HHeJ_P0090398 Piezo1 protein_coding protein_coding MGP_C3HHeJ_T0090399.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023263 125041219 - MGP_C3HHeJ_P0090399 Piezo1 protein_coding protein_coding MGP_C3HHeJ_T0090400.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023272 125026332 - Piezo1 protein_coding retained_intron MGP_C3HHeJ_T0090401.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023533 125095380 - MGP_C3HHeJ_P0090401 Piezo1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090402.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023533 125041218 - MGP_C3HHeJ_P0090402 Piezo1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090403.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023592 125024552 - Piezo1 protein_coding retained_intron MGP_C3HHeJ_T0090404.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125023631 125024228 - Piezo1 protein_coding retained_intron MGP_C3HHeJ_T0090405.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125024918 125025421 - Piezo1 protein_coding retained_intron MGP_C3HHeJ_T0090406.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125026416 125027176 - Piezo1 protein_coding retained_intron MGP_C3HHeJ_T0090407.1 MGP_C3HHeJ_G0033914.1 mouse_genomes_project 8 125027475 125039537 - MGP_C3HHeJ_P0090407 Piezo1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090332.1 MGP_C3HHeJ_G0033900.1 mouse_genomes_project 8 124276882 124336503 + Jph3 protein_coding processed_transcript MGP_C3HHeJ_T0090333.1 MGP_C3HHeJ_G0033900.1 mouse_genomes_project 8 124277344 124341155 + MGP_C3HHeJ_P0090333 Jph3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090334.1 MGP_C3HHeJ_G0033900.1 mouse_genomes_project 8 124277344 124337707 + MGP_C3HHeJ_P0090334 Jph3 protein_coding protein_coding MGP_C3HHeJ_T0090335.1 MGP_C3HHeJ_G0033900.1 mouse_genomes_project 8 124300359 124329469 + Jph3 protein_coding retained_intron MGP_C3HHeJ_T0089717.1 MGP_C3HHeJ_G0033684.1 mouse_genomes_project 8 104004860 104022394 - MGP_C3HHeJ_P0089717 protein_coding protein_coding MGP_C3HHeJ_T0089719.1 MGP_C3HHeJ_G0033684.1 mouse_genomes_project 8 104009695 104022255 - protein_coding retained_intron MGP_C3HHeJ_T0089720.1 MGP_C3HHeJ_G0033684.1 mouse_genomes_project 8 104016120 104022394 - protein_coding retained_intron MGP_C3HHeJ_T0089792.1 MGP_C3HHeJ_G0033716.1 mouse_genomes_project 8 106960950 106963466 - MGP_C3HHeJ_P0089792 B3gnt9 protein_coding protein_coding MGP_C3HHeJ_T0089793.1 MGP_C3HHeJ_G0033716.1 mouse_genomes_project 8 106960951 106963464 - MGP_C3HHeJ_P0089793 B3gnt9 protein_coding protein_coding MGP_C3HHeJ_T0089794.1 MGP_C3HHeJ_G0033716.1 mouse_genomes_project 8 106962634 106963464 - MGP_C3HHeJ_P0089794 B3gnt9 protein_coding protein_coding MGP_C3HHeJ_T0005264.1 MGP_C3HHeJ_G0004455.1 mouse_genomes_project 8 12482593 12483114 - Gm16350 antisense antisense MGP_C3HHeJ_T0089597.1 MGP_C3HHeJ_G0033645.1 mouse_genomes_project 8 95299342 95308281 + MGP_C3HHeJ_P0089597 Herpud1 protein_coding protein_coding MGP_C3HHeJ_T0089598.1 MGP_C3HHeJ_G0033645.1 mouse_genomes_project 8 95299399 95308262 + MGP_C3HHeJ_P0089598 Herpud1 protein_coding protein_coding MGP_C3HHeJ_T0089599.1 MGP_C3HHeJ_G0033645.1 mouse_genomes_project 8 95300457 95305366 + Herpud1 protein_coding processed_transcript MGP_C3HHeJ_T0089600.1 MGP_C3HHeJ_G0033645.1 mouse_genomes_project 8 95300503 95305206 + Herpud1 protein_coding processed_transcript MGP_C3HHeJ_T0089601.1 MGP_C3HHeJ_G0033645.1 mouse_genomes_project 8 95306430 95307813 + Herpud1 protein_coding retained_intron MGP_C3HHeJ_T0015806.1 MGP_C3HHeJ_G0013910.1 mouse_genomes_project 8 100314613 100317317 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099645.1 MGP_C3HHeJ_G0037839.1 mouse_genomes_project 8 76550656 76550763 - Gm22509 snRNA snRNA MGP_C3HHeJ_T0088715.1 MGP_C3HHeJ_G0033382.1 mouse_genomes_project 8 70105626 70125108 + MGP_C3HHeJ_P0088715 protein_coding protein_coding MGP_C3HHeJ_T0088716.1 MGP_C3HHeJ_G0033382.1 mouse_genomes_project 8 70105626 70125108 + MGP_C3HHeJ_P0088716 protein_coding protein_coding MGP_C3HHeJ_T0088717.1 MGP_C3HHeJ_G0033382.1 mouse_genomes_project 8 70105629 70125107 + MGP_C3HHeJ_P0088717 protein_coding protein_coding MGP_C3HHeJ_T0088718.1 MGP_C3HHeJ_G0033382.1 mouse_genomes_project 8 70105629 70125107 + MGP_C3HHeJ_P0088718 protein_coding protein_coding MGP_C3HHeJ_T0089334.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522053 85524963 + MGP_C3HHeJ_P0089334 Dnase2a protein_coding protein_coding MGP_C3HHeJ_T0089335.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522053 85525202 + MGP_C3HHeJ_P0089335 Dnase2a protein_coding protein_coding MGP_C3HHeJ_T0089336.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522140 85522694 + Dnase2a protein_coding retained_intron MGP_C3HHeJ_T0089337.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522140 85522962 + Dnase2a protein_coding retained_intron MGP_C3HHeJ_T0089338.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522183 85523419 + MGP_C3HHeJ_P0089338 Dnase2a protein_coding protein_coding MGP_C3HHeJ_T0089339.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522214 85527971 + Dnase2a protein_coding processed_transcript MGP_C3HHeJ_T0089340.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85522224 85523458 + MGP_C3HHeJ_P0089340 Dnase2a protein_coding protein_coding MGP_C3HHeJ_T0089341.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85523328 85524955 + Dnase2a protein_coding processed_transcript MGP_C3HHeJ_T0089345.1 MGP_C3HHeJ_G0033565.1 mouse_genomes_project 8 85526884 85536366 + Dnase2a protein_coding processed_transcript MGP_C3HHeJ_T0088645.1 MGP_C3HHeJ_G0033355.1 mouse_genomes_project 8 69109774 69131396 + MGP_C3HHeJ_P0088645 Zfp930 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088646.1 MGP_C3HHeJ_G0033355.1 mouse_genomes_project 8 69127192 69129830 + MGP_C3HHeJ_P0088646 Zfp930 protein_coding protein_coding MGP_C3HHeJ_T0098187.1 MGP_C3HHeJ_G0036399.1 mouse_genomes_project 8 6823061 6823179 - n-R5s95 rRNA rRNA MGP_C3HHeJ_T0097937.1 MGP_C3HHeJ_G0036149.1 mouse_genomes_project 8 106413300 106421287 + pseudogene pseudogene MGP_C3HHeJ_T0098194.1 MGP_C3HHeJ_G0036406.1 mouse_genomes_project 8 63934400 63934521 + Gm22586 rRNA rRNA MGP_C3HHeJ_T0090413.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125187602 125263184 - MGP_C3HHeJ_P0090413 Cbfa2t3 protein_coding protein_coding MGP_C3HHeJ_T0090414.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125188327 125236376 - MGP_C3HHeJ_P0090414 Cbfa2t3 protein_coding protein_coding MGP_C3HHeJ_T0090415.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125188802 125236479 - MGP_C3HHeJ_P0090415 Cbfa2t3 protein_coding protein_coding MGP_C3HHeJ_T0090416.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125197443 125236998 - MGP_C3HHeJ_P0090416 Cbfa2t3 protein_coding protein_coding MGP_C3HHeJ_T0090417.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125197447 125204876 - Cbfa2t3 protein_coding processed_transcript MGP_C3HHeJ_T0090418.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125201433 125236415 - Cbfa2t3 protein_coding processed_transcript MGP_C3HHeJ_T0090419.1 MGP_C3HHeJ_G0033920.1 mouse_genomes_project 8 125208432 125262977 - Cbfa2t3 protein_coding retained_intron MGP_C3HHeJ_T0089580.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94937214 94968796 + MGP_C3HHeJ_P0089580 Ogfod1 protein_coding protein_coding MGP_C3HHeJ_T0089581.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94937254 94968796 + MGP_C3HHeJ_P0089581 Ogfod1 protein_coding protein_coding MGP_C3HHeJ_T0089582.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94937276 94939469 + Ogfod1 protein_coding retained_intron MGP_C3HHeJ_T0089583.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94937279 94958651 + Ogfod1 protein_coding processed_transcript MGP_C3HHeJ_T0089584.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94937307 94968796 + MGP_C3HHeJ_P0089584 Ogfod1 protein_coding protein_coding MGP_C3HHeJ_T0089585.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94937312 94956983 + Ogfod1 protein_coding processed_transcript MGP_C3HHeJ_T0089586.1 MGP_C3HHeJ_G0033637.1 mouse_genomes_project 8 94955930 94958652 + Ogfod1 protein_coding retained_intron MGP_C3HHeJ_T0089410.1 MGP_C3HHeJ_G0033583.1 mouse_genomes_project 8 85786502 85789109 + MGP_C3HHeJ_P0089410 Cks1brt protein_coding protein_coding MGP_C3HHeJ_T0097931.1 MGP_C3HHeJ_G0036143.1 mouse_genomes_project 8 33533614 33534769 + pseudogene pseudogene MGP_C3HHeJ_T0088010.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22794332 22805972 - MGP_C3HHeJ_P0088010 Adam3 protein_coding protein_coding MGP_C3HHeJ_T0088011.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22794339 22849701 - MGP_C3HHeJ_P0088011 Adam3 protein_coding protein_coding MGP_C3HHeJ_T0088012.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22794408 22849647 - MGP_C3HHeJ_P0088012 Adam3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088013.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22797923 22849637 - MGP_C3HHeJ_P0088013 Adam3 protein_coding protein_coding MGP_C3HHeJ_T0088014.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22826358 22849637 - MGP_C3HHeJ_P0088014 Adam3 protein_coding protein_coding MGP_C3HHeJ_T0088015.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22838925 22849634 - Adam3 protein_coding processed_transcript MGP_C3HHeJ_T0088016.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22838999 22849649 - Adam3 protein_coding processed_transcript MGP_C3HHeJ_T0088017.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22839000 22849674 - Adam3 protein_coding processed_transcript MGP_C3HHeJ_T0088018.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22839039 22849637 - MGP_C3HHeJ_P0088018 Adam3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088019.1 MGP_C3HHeJ_G0033163.1 mouse_genomes_project 8 22839064 22849631 - MGP_C3HHeJ_P0088019 Adam3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087903.1 MGP_C3HHeJ_G0033114.1 mouse_genomes_project 8 18869452 18874503 + MGP_C3HHeJ_P0087903 Defb33 protein_coding protein_coding MGP_C3HHeJ_T0002305.1 MGP_C3HHeJ_G0002224.1 mouse_genomes_project 8 123654085 123654763 + TEC TEC MGP_C3HHeJ_T0087704.1 MGP_C3HHeJ_G0033052.1 mouse_genomes_project 8 9005649 9028981 - MGP_C3HHeJ_P0087704 1700016D06Rik protein_coding protein_coding MGP_C3HHeJ_T0087705.1 MGP_C3HHeJ_G0033052.1 mouse_genomes_project 8 9006203 9011419 - 1700016D06Rik protein_coding processed_transcript MGP_C3HHeJ_T0087706.1 MGP_C3HHeJ_G0033052.1 mouse_genomes_project 8 9006204 9054594 - MGP_C3HHeJ_P0087706 1700016D06Rik protein_coding protein_coding MGP_C3HHeJ_T0087707.1 MGP_C3HHeJ_G0033052.1 mouse_genomes_project 8 9006205 9013293 - MGP_C3HHeJ_P0087707 1700016D06Rik protein_coding protein_coding MGP_C3HHeJ_T0087624.1 MGP_C3HHeJ_G0033022.1 mouse_genomes_project 8 1205977 1217220 + MGP_C3HHeJ_P0087624 Lrrc8e protein_coding protein_coding MGP_C3HHeJ_T0005324.1 MGP_C3HHeJ_G0004505.1 mouse_genomes_project 8 119348859 119357584 + Gm15395 antisense antisense MGP_C3HHeJ_T0090211.1 MGP_C3HHeJ_G0033868.1 mouse_genomes_project 8 121898657 121921753 - MGP_C3HHeJ_P0090211 Slc38a8 protein_coding protein_coding MGP_C3HHeJ_T0090212.1 MGP_C3HHeJ_G0033868.1 mouse_genomes_project 8 121904576 121915953 - MGP_C3HHeJ_P0090212 Slc38a8 protein_coding protein_coding MGP_C3HHeJ_T0090213.1 MGP_C3HHeJ_G0033868.1 mouse_genomes_project 8 121905154 121913804 - Slc38a8 protein_coding retained_intron MGP_C3HHeJ_T0090214.1 MGP_C3HHeJ_G0033868.1 mouse_genomes_project 8 121913108 121921349 - MGP_C3HHeJ_P0090214 Slc38a8 protein_coding protein_coding MGP_C3HHeJ_T0090215.1 MGP_C3HHeJ_G0033868.1 mouse_genomes_project 8 121915050 121921750 - MGP_C3HHeJ_P0090215 Slc38a8 protein_coding protein_coding MGP_C3HHeJ_T0090188.1 MGP_C3HHeJ_G0033860.1 mouse_genomes_project 8 120015369 120027963 - MGP_C3HHeJ_P0090188 Sdr42e1 protein_coding protein_coding MGP_C3HHeJ_T0090189.1 MGP_C3HHeJ_G0033860.1 mouse_genomes_project 8 120015372 120030105 - MGP_C3HHeJ_P0090189 Sdr42e1 protein_coding protein_coding MGP_C3HHeJ_T0090190.1 MGP_C3HHeJ_G0033860.1 mouse_genomes_project 8 120017303 120030105 - MGP_C3HHeJ_P0090190 Sdr42e1 protein_coding protein_coding MGP_C3HHeJ_T0090461.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125822816 125834974 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0090462.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125822816 125834928 - MGP_C3HHeJ_P0090462 Vps9d1 protein_coding protein_coding MGP_C3HHeJ_T0090463.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125822816 125835100 - MGP_C3HHeJ_P0090463 Vps9d1 protein_coding protein_coding MGP_C3HHeJ_T0090464.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125822818 125834915 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0090465.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125822818 125834861 - MGP_C3HHeJ_P0090465 Vps9d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090466.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125822819 125834844 - MGP_C3HHeJ_P0090466 Vps9d1 protein_coding protein_coding MGP_C3HHeJ_T0090467.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125825702 125834857 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0090468.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125825898 125827686 - Vps9d1 protein_coding processed_transcript MGP_C3HHeJ_T0090469.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125827271 125828752 - Vps9d1 protein_coding processed_transcript MGP_C3HHeJ_T0090470.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125827612 125828769 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0090471.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125829313 125829744 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0090472.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125829588 125831824 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0090473.1 MGP_C3HHeJ_G0033933.1 mouse_genomes_project 8 125830463 125834802 - Vps9d1 protein_coding retained_intron MGP_C3HHeJ_T0089224.1 MGP_C3HHeJ_G0033536.1 mouse_genomes_project 8 84602534 84604614 - MGP_C3HHeJ_P0089224 Rln3 protein_coding protein_coding MGP_C3HHeJ_T0009111.1 MGP_C3HHeJ_G0007313.1 mouse_genomes_project 8 124072817 124076954 + 1700030M09Rik lincRNA lincRNA MGP_C3HHeJ_T0009112.1 MGP_C3HHeJ_G0007313.1 mouse_genomes_project 8 124072823 124076263 + 1700030M09Rik lincRNA lincRNA MGP_C3HHeJ_T0088130.1 MGP_C3HHeJ_G0033197.1 mouse_genomes_project 8 25647725 25676780 + MGP_C3HHeJ_P0088130 Chrnb3 protein_coding protein_coding MGP_C3HHeJ_T0088488.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 57384799 57583093 - MGP_C3HHeJ_P0088488 Galntl6 protein_coding protein_coding MGP_C3HHeJ_T0088489.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 57384807 58550331 - MGP_C3HHeJ_P0088489 Galntl6 protein_coding protein_coding MGP_C3HHeJ_T0088490.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 57405601 57456631 - Galntl6 protein_coding processed_transcript MGP_C3HHeJ_T0088491.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 58047509 58549318 - Galntl6 protein_coding retained_intron MGP_C3HHeJ_T0088492.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 58047595 58549267 - MGP_C3HHeJ_P0088492 Galntl6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088493.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 58047715 58333016 - MGP_C3HHeJ_P0088493 Galntl6 protein_coding protein_coding MGP_C3HHeJ_T0088494.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 58119634 58333036 - Galntl6 protein_coding processed_transcript MGP_C3HHeJ_T0088495.1 MGP_C3HHeJ_G0033314.1 mouse_genomes_project 8 58154165 58549551 - MGP_C3HHeJ_P0088495 Galntl6 protein_coding protein_coding MGP_C3HHeJ_T0089932.1 MGP_C3HHeJ_G0033774.1 mouse_genomes_project 8 108683821 108693550 - MGP_C3HHeJ_P0089932 protein_coding protein_coding MGP_C3HHeJ_T0089933.1 MGP_C3HHeJ_G0033774.1 mouse_genomes_project 8 108683848 108693550 - MGP_C3HHeJ_P0089933 protein_coding protein_coding MGP_C3HHeJ_T0089934.1 MGP_C3HHeJ_G0033774.1 mouse_genomes_project 8 108683852 108693172 - MGP_C3HHeJ_P0089934 protein_coding protein_coding MGP_C3HHeJ_T0089935.1 MGP_C3HHeJ_G0033774.1 mouse_genomes_project 8 108685903 108693548 - MGP_C3HHeJ_P0089935 protein_coding protein_coding MGP_C3HHeJ_T0089936.1 MGP_C3HHeJ_G0033774.1 mouse_genomes_project 8 108686002 108693472 - MGP_C3HHeJ_P0089936 protein_coding protein_coding MGP_C3HHeJ_T0089937.1 MGP_C3HHeJ_G0033774.1 mouse_genomes_project 8 108686079 108693558 - MGP_C3HHeJ_P0089937 protein_coding protein_coding MGP_C3HHeJ_T0089490.1 MGP_C3HHeJ_G0033607.1 mouse_genomes_project 8 89330037 89339311 - MGP_C3HHeJ_P0089490 Snx20 protein_coding protein_coding MGP_C3HHeJ_T0088849.1 MGP_C3HHeJ_G0033412.1 mouse_genomes_project 8 70761225 70764050 + MGP_C3HHeJ_P0088849 Rab3a protein_coding protein_coding MGP_C3HHeJ_T0088850.1 MGP_C3HHeJ_G0033412.1 mouse_genomes_project 8 70761826 70763069 + Rab3a protein_coding retained_intron MGP_C3HHeJ_T0018259.1 MGP_C3HHeJ_G0015482.1 mouse_genomes_project 8 88028316 88034187 - Gm27208 processed_transcript lincRNA MGP_C3HHeJ_T0018260.1 MGP_C3HHeJ_G0015482.1 mouse_genomes_project 8 88033704 88034809 - Gm27208 processed_transcript TEC MGP_C3HHeJ_T0087543.1 MGP_C3HHeJ_G0033000.1 mouse_genomes_project 8 404330 422328 + MGP_C3HHeJ_P0087543 1700019B03Rik protein_coding protein_coding MGP_C3HHeJ_T0087544.1 MGP_C3HHeJ_G0033000.1 mouse_genomes_project 8 404330 422328 + MGP_C3HHeJ_P0087544 1700019B03Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087545.1 MGP_C3HHeJ_G0033000.1 mouse_genomes_project 8 410150 422331 + MGP_C3HHeJ_P0087545 1700019B03Rik protein_coding protein_coding MGP_C3HHeJ_T0090255.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122554369 122610849 + MGP_C3HHeJ_P0090255 6430548M08Rik protein_coding protein_coding MGP_C3HHeJ_T0090256.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122554369 122600189 + MGP_C3HHeJ_P0090256 6430548M08Rik protein_coding protein_coding MGP_C3HHeJ_T0090257.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122554370 122610847 + MGP_C3HHeJ_P0090257 6430548M08Rik protein_coding protein_coding MGP_C3HHeJ_T0090258.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122589220 122590276 + MGP_C3HHeJ_P0090258 6430548M08Rik protein_coding protein_coding MGP_C3HHeJ_T0090259.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122589461 122598160 + MGP_C3HHeJ_P0090259 6430548M08Rik protein_coding protein_coding MGP_C3HHeJ_T0090260.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122589686 122608431 + MGP_C3HHeJ_P0090260 6430548M08Rik protein_coding protein_coding MGP_C3HHeJ_T0090261.1 MGP_C3HHeJ_G0033883.1 mouse_genomes_project 8 122601408 122606929 + 6430548M08Rik protein_coding processed_transcript MGP_C3HHeJ_T0099659.1 MGP_C3HHeJ_G0037853.1 mouse_genomes_project 8 108820170 108820280 - Gm22085 snRNA snRNA MGP_C3HHeJ_T0089860.1 MGP_C3HHeJ_G0033742.1 mouse_genomes_project 8 107431608 107436547 - MGP_C3HHeJ_P0089860 Enkd1 protein_coding protein_coding MGP_C3HHeJ_T0018269.1 MGP_C3HHeJ_G0015487.1 mouse_genomes_project 8 113165349 113182553 - 9430091E24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018270.1 MGP_C3HHeJ_G0015487.1 mouse_genomes_project 8 113165539 113182574 - 9430091E24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0088034.1 MGP_C3HHeJ_G0033167.1 mouse_genomes_project 8 23143177 23148587 + MGP_C3HHeJ_P0088034 Tm2d2 protein_coding protein_coding MGP_C3HHeJ_T0090181.1 MGP_C3HHeJ_G0033856.1 mouse_genomes_project 8 119418237 119459220 + MGP_C3HHeJ_P0090181 Bco1 protein_coding protein_coding MGP_C3HHeJ_T0090182.1 MGP_C3HHeJ_G0033856.1 mouse_genomes_project 8 119418248 119456607 + MGP_C3HHeJ_P0090182 Bco1 protein_coding protein_coding MGP_C3HHeJ_T0090183.1 MGP_C3HHeJ_G0033856.1 mouse_genomes_project 8 119421522 119458758 + MGP_C3HHeJ_P0090183 Bco1 protein_coding protein_coding MGP_C3HHeJ_T0090193.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 120663892 121735193 + MGP_C3HHeJ_P0090193 Cdh13 protein_coding protein_coding MGP_C3HHeJ_T0090194.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 120663914 121239096 + Cdh13 protein_coding retained_intron MGP_C3HHeJ_T0090195.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 120663934 121359315 + Cdh13 protein_coding retained_intron MGP_C3HHeJ_T0090196.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 120663955 121149796 + Cdh13 protein_coding retained_intron MGP_C3HHeJ_T0090197.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 120663956 121602310 + Cdh13 protein_coding retained_intron MGP_C3HHeJ_T0090198.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 120695609 121242464 + Cdh13 protein_coding processed_transcript MGP_C3HHeJ_T0090199.1 MGP_C3HHeJ_G0033863.1 mouse_genomes_project 8 121684965 121723438 + Cdh13 protein_coding processed_transcript MGP_C3HHeJ_T0009087.1 MGP_C3HHeJ_G0007294.1 mouse_genomes_project 8 107348723 107362945 - Gm5914 lincRNA lincRNA MGP_C3HHeJ_T0009088.1 MGP_C3HHeJ_G0007294.1 mouse_genomes_project 8 107348737 107363080 - Gm5914 lincRNA lincRNA MGP_C3HHeJ_T0088306.1 MGP_C3HHeJ_G0033263.1 mouse_genomes_project 8 44451677 44474105 - MGP_C3HHeJ_P0088306 Fam149a protein_coding protein_coding MGP_C3HHeJ_T0088307.1 MGP_C3HHeJ_G0033263.1 mouse_genomes_project 8 44451685 44499607 - MGP_C3HHeJ_P0088307 Fam149a protein_coding protein_coding MGP_C3HHeJ_T0088308.1 MGP_C3HHeJ_G0033263.1 mouse_genomes_project 8 44453719 44474002 - MGP_C3HHeJ_P0088308 Fam149a protein_coding protein_coding MGP_C3HHeJ_T0090184.1 MGP_C3HHeJ_G0033857.1 mouse_genomes_project 8 119487495 119535457 + MGP_C3HHeJ_P0090184 Gan protein_coding protein_coding MGP_C3HHeJ_T0100885.1 MGP_C3HHeJ_G0039079.1 mouse_genomes_project 8 23802723 23802853 + Gm24992 snoRNA snoRNA MGP_C3HHeJ_T0101273.1 MGP_C3HHeJ_G0039381.1 mouse_genomes_project 8 72093854 72097426 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101274.1 MGP_C3HHeJ_G0039381.1 mouse_genomes_project 8 72095777 72096400 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0090514.1 MGP_C3HHeJ_G0033943.1 mouse_genomes_project 8 126101678 126121698 + MGP_C3HHeJ_P0090514 Gas8 protein_coding protein_coding MGP_C3HHeJ_T0090457.1 MGP_C3HHeJ_G0033930.1 mouse_genomes_project 8 125792251 125801840 + MGP_C3HHeJ_P0090457 Spata33 protein_coding protein_coding MGP_C3HHeJ_T0005317.1 MGP_C3HHeJ_G0004498.1 mouse_genomes_project 8 112805671 112807511 + Gm15895 antisense antisense MGP_C3HHeJ_T0090346.1 MGP_C3HHeJ_G0033902.1 mouse_genomes_project 8 124414875 124443120 - MGP_C3HHeJ_P0090346 Slc7a5 protein_coding protein_coding MGP_C3HHeJ_T0090347.1 MGP_C3HHeJ_G0033902.1 mouse_genomes_project 8 124416515 124417628 - Slc7a5 protein_coding retained_intron MGP_C3HHeJ_T0090348.1 MGP_C3HHeJ_G0033902.1 mouse_genomes_project 8 124422119 124430246 - Slc7a5 protein_coding processed_transcript MGP_C3HHeJ_T0015739.1 MGP_C3HHeJ_G0013843.1 mouse_genomes_project 8 951074 953943 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090234.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122344762 122393491 + MGP_C3HHeJ_P0090234 Usp10 protein_coding protein_coding MGP_C3HHeJ_T0090235.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122345216 122393496 + MGP_C3HHeJ_P0090235 Usp10 protein_coding protein_coding MGP_C3HHeJ_T0090236.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122345235 122388563 + Usp10 protein_coding processed_transcript MGP_C3HHeJ_T0090237.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122345259 122387870 + MGP_C3HHeJ_P0090237 Usp10 protein_coding protein_coding MGP_C3HHeJ_T0090238.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122378178 122382819 + Usp10 protein_coding processed_transcript MGP_C3HHeJ_T0090239.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122382403 122389227 + Usp10 protein_coding retained_intron MGP_C3HHeJ_T0090240.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122382514 122388339 + Usp10 protein_coding retained_intron MGP_C3HHeJ_T0090241.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122387898 122391253 + Usp10 protein_coding retained_intron MGP_C3HHeJ_T0090242.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122388587 122390747 + Usp10 protein_coding retained_intron MGP_C3HHeJ_T0090243.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122389210 122392805 + MGP_C3HHeJ_P0090243 Usp10 protein_coding protein_coding MGP_C3HHeJ_T0090244.1 MGP_C3HHeJ_G0033880.1 mouse_genomes_project 8 122392141 122393493 + Usp10 protein_coding processed_transcript MGP_C3HHeJ_T0090226.1 MGP_C3HHeJ_G0033874.1 mouse_genomes_project 8 122048126 122059591 - MGP_C3HHeJ_P0090226 Kcng4 protein_coding protein_coding MGP_C3HHeJ_T0090227.1 MGP_C3HHeJ_G0033874.1 mouse_genomes_project 8 122048126 122059925 - MGP_C3HHeJ_P0090227 Kcng4 protein_coding protein_coding MGP_C3HHeJ_T0087808.1 MGP_C3HHeJ_G0033078.1 mouse_genomes_project 8 11031838 11048923 - Rasa3 protein_coding retained_intron MGP_C3HHeJ_T0087809.1 MGP_C3HHeJ_G0033078.1 mouse_genomes_project 8 11031838 11142309 - MGP_C3HHeJ_P0087809 Rasa3 protein_coding protein_coding MGP_C3HHeJ_T0087810.1 MGP_C3HHeJ_G0033078.1 mouse_genomes_project 8 11042354 11042928 - Rasa3 protein_coding retained_intron MGP_C3HHeJ_T0087811.1 MGP_C3HHeJ_G0033078.1 mouse_genomes_project 8 11060693 11070993 - Rasa3 protein_coding retained_intron MGP_C3HHeJ_T0087812.1 MGP_C3HHeJ_G0033078.1 mouse_genomes_project 8 11060694 11142157 - MGP_C3HHeJ_P0087812 Rasa3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087813.1 MGP_C3HHeJ_G0033078.1 mouse_genomes_project 8 11062979 11142189 - Rasa3 protein_coding retained_intron MGP_C3HHeJ_T0087800.1 MGP_C3HHeJ_G0033075.1 mouse_genomes_project 8 10891944 10917938 + MGP_C3HHeJ_P0087800 Tmem255b protein_coding protein_coding MGP_C3HHeJ_T0087801.1 MGP_C3HHeJ_G0033075.1 mouse_genomes_project 8 10891944 10917938 + MGP_C3HHeJ_P0087801 Tmem255b protein_coding protein_coding MGP_C3HHeJ_T0009018.1 MGP_C3HHeJ_G0007245.1 mouse_genomes_project 8 56301955 56303292 + lincRNA lincRNA MGP_C3HHeJ_T0088337.1 MGP_C3HHeJ_G0033266.1 mouse_genomes_project 8 45020622 45055069 + MGP_C3HHeJ_P0088337 Pdlim3 protein_coding protein_coding MGP_C3HHeJ_T0088685.1 MGP_C3HHeJ_G0033369.1 mouse_genomes_project 8 69829418 69836736 - MGP_C3HHeJ_P0088685 Cilp2 protein_coding protein_coding MGP_C3HHeJ_T0087566.1 MGP_C3HHeJ_G0033007.1 mouse_genomes_project 8 578675 581415 + MGP_C3HHeJ_P0087566 Pet100 protein_coding protein_coding MGP_C3HHeJ_T0089034.1 MGP_C3HHeJ_G0033472.1 mouse_genomes_project 8 72823069 72838376 + MGP_C3HHeJ_P0089034 Tmem38a protein_coding protein_coding MGP_C3HHeJ_T0015789.1 MGP_C3HHeJ_G0013893.1 mouse_genomes_project 8 81677981 81678569 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087912.1 MGP_C3HHeJ_G0033122.1 mouse_genomes_project 8 19800820 19807313 + MGP_C3HHeJ_P0087912 Defb50 protein_coding protein_coding MGP_C3HHeJ_T0018224.1 MGP_C3HHeJ_G0015468.1 mouse_genomes_project 8 16208920 16236433 - Gm16725 processed_transcript processed_transcript MGP_C3HHeJ_T0088781.1 MGP_C3HHeJ_G0033392.1 mouse_genomes_project 8 70341304 70349976 + MGP_C3HHeJ_P0088781 Comp protein_coding protein_coding MGP_C3HHeJ_T0089388.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85696697 85699967 + MGP_C3HHeJ_P0089388 Dhps protein_coding protein_coding MGP_C3HHeJ_T0089389.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85696736 85699961 + MGP_C3HHeJ_P0089389 Dhps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089390.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85696746 85697750 + Dhps protein_coding retained_intron MGP_C3HHeJ_T0089391.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85697241 85698383 + Dhps protein_coding retained_intron MGP_C3HHeJ_T0089392.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85697859 85698815 + Dhps protein_coding retained_intron MGP_C3HHeJ_T0089393.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85697859 85699956 + Dhps protein_coding retained_intron MGP_C3HHeJ_T0089394.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85698382 85699253 + Dhps protein_coding retained_intron MGP_C3HHeJ_T0089395.1 MGP_C3HHeJ_G0033578.1 mouse_genomes_project 8 85699503 85699956 + Dhps protein_coding retained_intron MGP_C3HHeJ_T0088908.1 MGP_C3HHeJ_G0033431.1 mouse_genomes_project 8 71459308 71471224 - MGP_C3HHeJ_P0088908 Ushbp1 protein_coding protein_coding MGP_C3HHeJ_T0088232.1 MGP_C3HHeJ_G0033240.1 mouse_genomes_project 8 39241444 39299886 + MGP_C3HHeJ_P0088232 Zdhhc2 protein_coding protein_coding MGP_C3HHeJ_T0088233.1 MGP_C3HHeJ_G0033240.1 mouse_genomes_project 8 39241450 39325974 + MGP_C3HHeJ_P0088233 Zdhhc2 protein_coding protein_coding MGP_C3HHeJ_T0088234.1 MGP_C3HHeJ_G0033240.1 mouse_genomes_project 8 39241451 39283815 + Zdhhc2 protein_coding retained_intron MGP_C3HHeJ_T0088235.1 MGP_C3HHeJ_G0033240.1 mouse_genomes_project 8 39241469 39298425 + MGP_C3HHeJ_P0088235 Zdhhc2 protein_coding protein_coding MGP_C3HHeJ_T0088236.1 MGP_C3HHeJ_G0033240.1 mouse_genomes_project 8 39241733 39272225 + Zdhhc2 protein_coding processed_transcript MGP_C3HHeJ_T0088244.1 MGP_C3HHeJ_G0033240.1 mouse_genomes_project 8 39316273 39325976 + Zdhhc2 protein_coding processed_transcript MGP_C3HHeJ_T0100890.1 MGP_C3HHeJ_G0039084.1 mouse_genomes_project 8 41415341 41415405 - Gm23531 snoRNA snoRNA MGP_C3HHeJ_T0089107.1 MGP_C3HHeJ_G0033495.1 mouse_genomes_project 8 79608101 79649081 - MGP_C3HHeJ_P0089107 1700011L22Rik protein_coding protein_coding MGP_C3HHeJ_T0087594.1 MGP_C3HHeJ_G0033014.1 mouse_genomes_project 8 669599 680116 - MGP_C3HHeJ_P0087594 Clec4g protein_coding protein_coding MGP_C3HHeJ_T0087595.1 MGP_C3HHeJ_G0033014.1 mouse_genomes_project 8 678626 683214 - MGP_C3HHeJ_P0087595 Clec4g protein_coding protein_coding MGP_C3HHeJ_T0087596.1 MGP_C3HHeJ_G0033014.1 mouse_genomes_project 8 679776 681216 - Clec4g protein_coding retained_intron MGP_C3HHeJ_T0088304.1 MGP_C3HHeJ_G0033262.1 mouse_genomes_project 8 44376658 44419208 - MGP_C3HHeJ_P0088304 Cyp4v3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088305.1 MGP_C3HHeJ_G0033262.1 mouse_genomes_project 8 44415687 44446996 - MGP_C3HHeJ_P0088305 Cyp4v3 protein_coding protein_coding MGP_C3HHeJ_T0089454.1 MGP_C3HHeJ_G0033598.1 mouse_genomes_project 8 88121100 88124886 - MGP_C3HHeJ_P0089454 Cbln1 protein_coding protein_coding MGP_C3HHeJ_T0089455.1 MGP_C3HHeJ_G0033598.1 mouse_genomes_project 8 88121484 88124680 - MGP_C3HHeJ_P0089455 Cbln1 protein_coding protein_coding MGP_C3HHeJ_T0088483.1 MGP_C3HHeJ_G0033312.1 mouse_genomes_project 8 57111603 57117921 + MGP_C3HHeJ_P0088483 protein_coding protein_coding MGP_C3HHeJ_T0090002.1 MGP_C3HHeJ_G0033795.1 mouse_genomes_project 8 111597027 111618878 - MGP_C3HHeJ_P0090002 Ist1 protein_coding protein_coding MGP_C3HHeJ_T0089778.1 MGP_C3HHeJ_G0033713.1 mouse_genomes_project 8 106830296 106849842 + MGP_C3HHeJ_P0089778 Ces4a protein_coding protein_coding MGP_C3HHeJ_T0088484.1 MGP_C3HHeJ_G0033313.1 mouse_genomes_project 8 57125749 57256061 - MGP_C3HHeJ_P0088484 Galnt7 protein_coding protein_coding MGP_C3HHeJ_T0088485.1 MGP_C3HHeJ_G0033313.1 mouse_genomes_project 8 57126621 57256033 - MGP_C3HHeJ_P0088485 Galnt7 protein_coding protein_coding MGP_C3HHeJ_T0088486.1 MGP_C3HHeJ_G0033313.1 mouse_genomes_project 8 57127945 57140364 - Galnt7 protein_coding processed_transcript MGP_C3HHeJ_T0088487.1 MGP_C3HHeJ_G0033313.1 mouse_genomes_project 8 57143905 57256062 - Galnt7 protein_coding retained_intron MGP_C3HHeJ_T0087531.1 MGP_C3HHeJ_G0032996.1 mouse_genomes_project 8 69499 202041 - MGP_C3HHeJ_P0087531 Insr protein_coding protein_coding MGP_C3HHeJ_T0087532.1 MGP_C3HHeJ_G0032996.1 mouse_genomes_project 8 131428 201975 - Insr protein_coding retained_intron MGP_C3HHeJ_T0015795.1 MGP_C3HHeJ_G0013899.1 mouse_genomes_project 8 85463573 85463957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087842.1 MGP_C3HHeJ_G0033090.1 mouse_genomes_project 8 12259438 12261541 - MGP_C3HHeJ_P0087842 protein_coding protein_coding MGP_C3HHeJ_T0090005.1 MGP_C3HHeJ_G0033798.1 mouse_genomes_project 8 111701038 111794341 + MGP_C3HHeJ_P0090005 Ap1g1 protein_coding protein_coding MGP_C3HHeJ_T0090006.1 MGP_C3HHeJ_G0033798.1 mouse_genomes_project 8 111701381 111732502 + Ap1g1 protein_coding processed_transcript MGP_C3HHeJ_T0090007.1 MGP_C3HHeJ_G0033798.1 mouse_genomes_project 8 111701390 111791495 + MGP_C3HHeJ_P0090007 Ap1g1 protein_coding protein_coding MGP_C3HHeJ_T0090008.1 MGP_C3HHeJ_G0033798.1 mouse_genomes_project 8 111770808 111779206 + Ap1g1 protein_coding retained_intron MGP_C3HHeJ_T0090009.1 MGP_C3HHeJ_G0033798.1 mouse_genomes_project 8 111788584 111790427 + Ap1g1 protein_coding retained_intron MGP_C3HHeJ_T0090010.1 MGP_C3HHeJ_G0033798.1 mouse_genomes_project 8 111793244 111794340 + MGP_C3HHeJ_P0090010 Ap1g1 protein_coding protein_coding MGP_C3HHeJ_T0089145.1 MGP_C3HHeJ_G0033509.1 mouse_genomes_project 8 83294060 83304635 - MGP_C3HHeJ_P0089145 Zfp330 protein_coding protein_coding MGP_C3HHeJ_T0100874.1 MGP_C3HHeJ_G0039068.1 mouse_genomes_project 8 11770703 11770834 - Gm26184 snoRNA snoRNA MGP_C3HHeJ_T0100919.1 MGP_C3HHeJ_G0039113.1 mouse_genomes_project 8 96711513 96711649 - Gm26493 snoRNA snoRNA MGP_C3HHeJ_T0011629.1 MGP_C3HHeJ_G0009762.1 mouse_genomes_project 8 91985684 91985949 - Gm23408 misc_RNA misc_RNA MGP_C3HHeJ_T0089758.1 MGP_C3HHeJ_G0033702.1 mouse_genomes_project 8 106235640 106238896 - MGP_C3HHeJ_P0089758 Rrad protein_coding protein_coding MGP_C3HHeJ_T0088340.1 MGP_C3HHeJ_G0033268.1 mouse_genomes_project 8 45080867 45117068 - MGP_C3HHeJ_P0088340 1700029J07Rik protein_coding protein_coding MGP_C3HHeJ_T0088341.1 MGP_C3HHeJ_G0033268.1 mouse_genomes_project 8 45080869 45117068 - MGP_C3HHeJ_P0088341 1700029J07Rik protein_coding protein_coding MGP_C3HHeJ_T0015766.1 MGP_C3HHeJ_G0013870.1 mouse_genomes_project 8 36888359 36891165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009080.1 MGP_C3HHeJ_G0007289.1 mouse_genomes_project 8 94641060 94702634 - Gm26843 lincRNA lincRNA MGP_C3HHeJ_T0009079.1 MGP_C3HHeJ_G0007288.1 mouse_genomes_project 8 93201321 93201754 - lincRNA lincRNA MGP_C3HHeJ_T0089990.1 MGP_C3HHeJ_G0033793.1 mouse_genomes_project 8 111494485 111498531 - MGP_C3HHeJ_P0089990 Hp protein_coding protein_coding MGP_C3HHeJ_T0018271.1 MGP_C3HHeJ_G0015488.1 mouse_genomes_project 8 124915395 124917792 + Gm20681 processed_transcript processed_transcript MGP_C3HHeJ_T0089457.1 MGP_C3HHeJ_G0033600.1 mouse_genomes_project 8 88320295 88563628 - MGP_C3HHeJ_P0089457 Zfp423 protein_coding protein_coding MGP_C3HHeJ_T0089458.1 MGP_C3HHeJ_G0033600.1 mouse_genomes_project 8 88320954 88629096 - MGP_C3HHeJ_P0089458 Zfp423 protein_coding protein_coding MGP_C3HHeJ_T0089459.1 MGP_C3HHeJ_G0033600.1 mouse_genomes_project 8 88443734 88622881 - MGP_C3HHeJ_P0089459 Zfp423 protein_coding protein_coding MGP_C3HHeJ_T0089460.1 MGP_C3HHeJ_G0033600.1 mouse_genomes_project 8 88443889 88466077 - MGP_C3HHeJ_P0089460 Zfp423 protein_coding protein_coding MGP_C3HHeJ_T0089461.1 MGP_C3HHeJ_G0033600.1 mouse_genomes_project 8 88444058 88613052 - Zfp423 protein_coding processed_transcript MGP_C3HHeJ_T0089462.1 MGP_C3HHeJ_G0033600.1 mouse_genomes_project 8 88444075 88617739 - Zfp423 protein_coding processed_transcript MGP_C3HHeJ_T0088660.1 MGP_C3HHeJ_G0033363.1 mouse_genomes_project 8 69675388 69710490 - MGP_C3HHeJ_P0088660 Gm20422 protein_coding protein_coding MGP_C3HHeJ_T0088662.1 MGP_C3HHeJ_G0033363.1 mouse_genomes_project 8 69675710 69702468 - MGP_C3HHeJ_P0088662 Gm20422 protein_coding protein_coding MGP_C3HHeJ_T0089027.1 MGP_C3HHeJ_G0033468.1 mouse_genomes_project 8 72705008 72719930 - MGP_C3HHeJ_P0089027 Cherp protein_coding protein_coding MGP_C3HHeJ_T0087561.1 MGP_C3HHeJ_G0033006.1 mouse_genomes_project 8 564846 578430 - Xab2 protein_coding retained_intron MGP_C3HHeJ_T0087562.1 MGP_C3HHeJ_G0033006.1 mouse_genomes_project 8 566512 578441 - MGP_C3HHeJ_P0087562 Xab2 protein_coding protein_coding MGP_C3HHeJ_T0087563.1 MGP_C3HHeJ_G0033006.1 mouse_genomes_project 8 566515 578427 - Xab2 protein_coding retained_intron MGP_C3HHeJ_T0087564.1 MGP_C3HHeJ_G0033006.1 mouse_genomes_project 8 570742 578395 - MGP_C3HHeJ_P0087564 Xab2 protein_coding protein_coding MGP_C3HHeJ_T0087565.1 MGP_C3HHeJ_G0033006.1 mouse_genomes_project 8 572420 578407 - MGP_C3HHeJ_P0087565 Xab2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090059.1 MGP_C3HHeJ_G0033816.1 mouse_genomes_project 8 112995150 113018194 - MGP_C3HHeJ_P0090059 Ddx19a protein_coding protein_coding MGP_C3HHeJ_T0090060.1 MGP_C3HHeJ_G0033816.1 mouse_genomes_project 8 112998355 113000417 - Ddx19a protein_coding retained_intron MGP_C3HHeJ_T0090061.1 MGP_C3HHeJ_G0033816.1 mouse_genomes_project 8 113000255 113018241 - Ddx19a protein_coding retained_intron MGP_C3HHeJ_T0010876.1 MGP_C3HHeJ_G0009009.1 mouse_genomes_project 8 56190748 56190857 + Gm25992 miRNA miRNA MGP_C3HHeJ_T0088834.1 MGP_C3HHeJ_G0033405.1 mouse_genomes_project 8 70613376 70616080 - MGP_C3HHeJ_P0088834 Gdf15 protein_coding protein_coding MGP_C3HHeJ_T0088835.1 MGP_C3HHeJ_G0033405.1 mouse_genomes_project 8 70613377 70616441 - MGP_C3HHeJ_P0088835 Gdf15 protein_coding protein_coding MGP_C3HHeJ_T0087670.1 MGP_C3HHeJ_G0033033.1 mouse_genomes_project 8 1771236 1813027 - MGP_C3HHeJ_P0087670 Shcbp1 protein_coding protein_coding MGP_C3HHeJ_T0098551.1 MGP_C3HHeJ_G0036751.1 mouse_genomes_project 8 122533839 122536516 + Gm15898 sense_intronic sense_intronic MGP_C3HHeJ_T0088526.1 MGP_C3HHeJ_G0033322.1 mouse_genomes_project 8 60874141 61057302 + MGP_C3HHeJ_P0088526 Sh3rf1 protein_coding protein_coding MGP_C3HHeJ_T0087918.1 MGP_C3HHeJ_G0033128.1 mouse_genomes_project 8 19952439 19952658 + MGP_C3HHeJ_P0087918 Defb35 protein_coding protein_coding MGP_C3HHeJ_T0087815.1 MGP_C3HHeJ_G0033080.1 mouse_genomes_project 8 11214519 11245481 + MGP_C3HHeJ_P0087815 Cdc16 protein_coding protein_coding MGP_C3HHeJ_T0087816.1 MGP_C3HHeJ_G0033080.1 mouse_genomes_project 8 11214520 11219851 + Cdc16 protein_coding processed_transcript MGP_C3HHeJ_T0087817.1 MGP_C3HHeJ_G0033080.1 mouse_genomes_project 8 11214558 11224732 + Cdc16 protein_coding processed_transcript MGP_C3HHeJ_T0087818.1 MGP_C3HHeJ_G0033080.1 mouse_genomes_project 8 11215610 11219854 + Cdc16 protein_coding retained_intron MGP_C3HHeJ_T0087819.1 MGP_C3HHeJ_G0033080.1 mouse_genomes_project 8 11242544 11245481 + Cdc16 protein_coding retained_intron MGP_C3HHeJ_T0088222.1 MGP_C3HHeJ_G0033235.1 mouse_genomes_project 8 36320918 37506301 - MGP_C3HHeJ_P0088222 Sgcz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088223.1 MGP_C3HHeJ_G0033235.1 mouse_genomes_project 8 36321174 37506301 - MGP_C3HHeJ_P0088223 Sgcz protein_coding protein_coding MGP_C3HHeJ_T0010886.1 MGP_C3HHeJ_G0009019.1 mouse_genomes_project 8 72914259 72914384 + Gm26237 miRNA miRNA MGP_C3HHeJ_T0005304.1 MGP_C3HHeJ_G0004488.1 mouse_genomes_project 8 95292137 95299877 - Gm15890 antisense antisense MGP_C3HHeJ_T0089743.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106095514 106109756 - Nae1 protein_coding processed_transcript MGP_C3HHeJ_T0089744.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106095514 106122080 - MGP_C3HHeJ_P0089744 Nae1 protein_coding protein_coding MGP_C3HHeJ_T0089745.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106095514 106122079 - MGP_C3HHeJ_P0089745 Nae1 protein_coding protein_coding MGP_C3HHeJ_T0089746.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106095520 106103807 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089747.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106095523 106104861 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089748.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106097686 106103867 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089749.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106104354 106115363 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089750.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106106515 106109788 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089751.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106109479 106122031 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089752.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106109908 106114782 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089753.1 MGP_C3HHeJ_G0033698.1 mouse_genomes_project 8 106115477 106122057 - Nae1 protein_coding retained_intron MGP_C3HHeJ_T0089729.1 MGP_C3HHeJ_G0033690.1 mouse_genomes_project 8 105828890 105851888 - MGP_C3HHeJ_P0089729 Cmtm2a protein_coding protein_coding MGP_C3HHeJ_T0090079.1 MGP_C3HHeJ_G0033820.1 mouse_genomes_project 8 113129046 113173538 + MGP_C3HHeJ_P0090079 Pdpr protein_coding protein_coding MGP_C3HHeJ_T0090080.1 MGP_C3HHeJ_G0033820.1 mouse_genomes_project 8 113129060 113171611 + MGP_C3HHeJ_P0090080 Pdpr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088158.1 MGP_C3HHeJ_G0033212.1 mouse_genomes_project 8 32120046 32140009 + MGP_C3HHeJ_P0088158 Ppp2cb protein_coding protein_coding MGP_C3HHeJ_T0102324.1 MGP_C3HHeJ_G0040287.1 mouse_genomes_project 8 16801470 16804001 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0089982.1 MGP_C3HHeJ_G0033787.1 mouse_genomes_project 8 109274506 109404813 + MGP_C3HHeJ_P0089982 Wwp2 protein_coding protein_coding MGP_C3HHeJ_T0088464.1 MGP_C3HHeJ_G0033303.1 mouse_genomes_project 8 54522644 54635654 + MGP_C3HHeJ_P0088464 Gpm6a protein_coding protein_coding MGP_C3HHeJ_T0090162.1 MGP_C3HHeJ_G0033847.1 mouse_genomes_project 8 117934461 117958613 - MGP_C3HHeJ_P0090162 Maf protein_coding protein_coding MGP_C3HHeJ_T0090163.1 MGP_C3HHeJ_G0033847.1 mouse_genomes_project 8 117952917 117959307 - MGP_C3HHeJ_P0090163 Maf protein_coding protein_coding MGP_C3HHeJ_T0087986.1 MGP_C3HHeJ_G0033152.1 mouse_genomes_project 8 21221060 21226741 + MGP_C3HHeJ_P0087986 Nkx6-3 protein_coding protein_coding MGP_C3HHeJ_T0009011.1 MGP_C3HHeJ_G0007238.1 mouse_genomes_project 8 32912691 32934392 + lincRNA lincRNA MGP_C3HHeJ_T0087783.1 MGP_C3HHeJ_G0033069.1 mouse_genomes_project 8 10661534 10695448 - MGP_C3HHeJ_P0087783 protein_coding protein_coding MGP_C3HHeJ_T0087784.1 MGP_C3HHeJ_G0033069.1 mouse_genomes_project 8 10675526 10695448 - MGP_C3HHeJ_P0087784 protein_coding protein_coding MGP_C3HHeJ_T0087785.1 MGP_C3HHeJ_G0033069.1 mouse_genomes_project 8 10681791 10682615 - protein_coding retained_intron MGP_C3HHeJ_T0087786.1 MGP_C3HHeJ_G0033069.1 mouse_genomes_project 8 10682039 10695357 - MGP_C3HHeJ_P0087786 protein_coding protein_coding MGP_C3HHeJ_T0087787.1 MGP_C3HHeJ_G0033069.1 mouse_genomes_project 8 10682171 10695382 - MGP_C3HHeJ_P0087787 protein_coding protein_coding MGP_C3HHeJ_T0009052.1 MGP_C3HHeJ_G0007275.1 mouse_genomes_project 8 88110628 88111628 + 4930535O05Rik lincRNA lincRNA MGP_C3HHeJ_T0090474.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125834946 125851301 + MGP_C3HHeJ_P0090474 Zfp276 protein_coding protein_coding MGP_C3HHeJ_T0090475.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125835022 125838388 + Zfp276 protein_coding retained_intron MGP_C3HHeJ_T0090476.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125835035 125851299 + Zfp276 protein_coding retained_intron MGP_C3HHeJ_T0090477.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125835437 125846624 + MGP_C3HHeJ_P0090477 Zfp276 protein_coding protein_coding MGP_C3HHeJ_T0090478.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125839067 125849678 + Zfp276 protein_coding retained_intron MGP_C3HHeJ_T0090479.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125840200 125849473 + Zfp276 protein_coding retained_intron MGP_C3HHeJ_T0090480.1 MGP_C3HHeJ_G0033934.1 mouse_genomes_project 8 125846374 125847197 + Zfp276 protein_coding retained_intron MGP_C3HHeJ_T0002294.1 MGP_C3HHeJ_G0002214.1 mouse_genomes_project 8 84771517 84773697 + TEC TEC MGP_C3HHeJ_T0097941.1 MGP_C3HHeJ_G0036153.1 mouse_genomes_project 8 124985274 124987270 + pseudogene pseudogene MGP_C3HHeJ_T0087708.1 MGP_C3HHeJ_G0033053.1 mouse_genomes_project 8 9081695 9182599 + MGP_C3HHeJ_P0087708 Arhgef7 protein_coding protein_coding MGP_C3HHeJ_T0087709.1 MGP_C3HHeJ_G0033053.1 mouse_genomes_project 8 9081842 9184257 + MGP_C3HHeJ_P0087709 Arhgef7 protein_coding protein_coding MGP_C3HHeJ_T0087710.1 MGP_C3HHeJ_G0033053.1 mouse_genomes_project 8 9139801 9194757 + MGP_C3HHeJ_P0087710 Arhgef7 protein_coding protein_coding MGP_C3HHeJ_T0087711.1 MGP_C3HHeJ_G0033053.1 mouse_genomes_project 8 9171912 9175883 + Arhgef7 protein_coding processed_transcript MGP_C3HHeJ_T0087712.1 MGP_C3HHeJ_G0033053.1 mouse_genomes_project 8 9189775 9191838 + Arhgef7 protein_coding processed_transcript MGP_C3HHeJ_T0088941.1 MGP_C3HHeJ_G0033443.1 mouse_genomes_project 8 71653872 71659717 - MGP_C3HHeJ_P0088941 Nxnl1 protein_coding protein_coding MGP_C3HHeJ_T0088942.1 MGP_C3HHeJ_G0033443.1 mouse_genomes_project 8 71653872 71659765 - MGP_C3HHeJ_P0088942 Nxnl1 protein_coding protein_coding MGP_C3HHeJ_T0010888.1 MGP_C3HHeJ_G0009021.1 mouse_genomes_project 8 84277935 84278042 - Mir1668 miRNA miRNA MGP_C3HHeJ_T0008982.1 MGP_C3HHeJ_G0007217.1 mouse_genomes_project 8 8325685 8372974 + 9530052E02Rik lincRNA lincRNA MGP_C3HHeJ_T0008983.1 MGP_C3HHeJ_G0007217.1 mouse_genomes_project 8 8368007 8372979 + 9530052E02Rik lincRNA lincRNA MGP_C3HHeJ_T0010865.1 MGP_C3HHeJ_G0008998.1 mouse_genomes_project 8 17267026 17267116 - Gm27852 miRNA miRNA MGP_C3HHeJ_T0090525.1 MGP_C3HHeJ_G0033951.1 mouse_genomes_project 8 126535214 126560193 - MGP_C3HHeJ_P0090525 Taf5l protein_coding unknown_likely_coding MGP_C3HHeJ_T0089406.1 MGP_C3HHeJ_G0033580.1 mouse_genomes_project 8 85705725 85707105 + Wdr83os protein_coding retained_intron MGP_C3HHeJ_T0089407.1 MGP_C3HHeJ_G0033580.1 mouse_genomes_project 8 85705763 85706762 + MGP_C3HHeJ_P0089407 Wdr83os protein_coding protein_coding MGP_C3HHeJ_T0089708.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100190116 100596104 - MGP_C3HHeJ_P0089708 Cdh8 protein_coding protein_coding MGP_C3HHeJ_T0089709.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100190528 100596104 - MGP_C3HHeJ_P0089709 Cdh8 protein_coding protein_coding MGP_C3HHeJ_T0089710.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100194420 100596116 - MGP_C3HHeJ_P0089710 Cdh8 protein_coding protein_coding MGP_C3HHeJ_T0089711.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100194611 100596148 - MGP_C3HHeJ_P0089711 Cdh8 protein_coding protein_coding MGP_C3HHeJ_T0089712.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100194611 100595996 - MGP_C3HHeJ_P0089712 Cdh8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089713.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100344011 100458485 - Cdh8 protein_coding retained_intron MGP_C3HHeJ_T0089714.1 MGP_C3HHeJ_G0033681.1 mouse_genomes_project 8 100400343 100596116 - MGP_C3HHeJ_P0089714 Cdh8 protein_coding protein_coding MGP_C3HHeJ_T0088640.1 MGP_C3HHeJ_G0033354.1 mouse_genomes_project 8 69027884 69082820 - MGP_C3HHeJ_P0088640 Lzts1 protein_coding protein_coding MGP_C3HHeJ_T0088641.1 MGP_C3HHeJ_G0033354.1 mouse_genomes_project 8 69030722 69036180 - MGP_C3HHeJ_P0088641 Lzts1 protein_coding protein_coding MGP_C3HHeJ_T0088642.1 MGP_C3HHeJ_G0033354.1 mouse_genomes_project 8 69062802 69082810 - Lzts1 protein_coding processed_transcript MGP_C3HHeJ_T0088643.1 MGP_C3HHeJ_G0033354.1 mouse_genomes_project 8 69080751 69082800 - Lzts1 protein_coding processed_transcript MGP_C3HHeJ_T0088644.1 MGP_C3HHeJ_G0033354.1 mouse_genomes_project 8 69082306 69082784 - Lzts1 protein_coding retained_intron MGP_C3HHeJ_T0089328.1 MGP_C3HHeJ_G0033563.1 mouse_genomes_project 8 85498396 85506340 - MGP_C3HHeJ_P0089328 Gcdh protein_coding protein_coding MGP_C3HHeJ_T0089329.1 MGP_C3HHeJ_G0033563.1 mouse_genomes_project 8 85503392 85505944 - Gcdh protein_coding retained_intron MGP_C3HHeJ_T0089330.1 MGP_C3HHeJ_G0033563.1 mouse_genomes_project 8 85503591 85505326 - Gcdh protein_coding retained_intron MGP_C3HHeJ_T0089331.1 MGP_C3HHeJ_G0033563.1 mouse_genomes_project 8 85505310 85506134 - Gcdh protein_coding retained_intron MGP_C3HHeJ_T0089332.1 MGP_C3HHeJ_G0033563.1 mouse_genomes_project 8 85505753 85506580 - MGP_C3HHeJ_P0089332 Gcdh protein_coding protein_coding MGP_C3HHeJ_T0089011.1 MGP_C3HHeJ_G0033460.1 mouse_genomes_project 8 72424123 72435947 + MGP_C3HHeJ_P0089011 Hsh2d protein_coding protein_coding MGP_C3HHeJ_T0089012.1 MGP_C3HHeJ_G0033460.1 mouse_genomes_project 8 72428458 72435984 + MGP_C3HHeJ_P0089012 Hsh2d protein_coding protein_coding MGP_C3HHeJ_T0089973.1 MGP_C3HHeJ_G0033785.1 mouse_genomes_project 8 109226304 109241089 - MGP_C3HHeJ_P0089973 Nqo1 protein_coding protein_coding MGP_C3HHeJ_T0089024.1 MGP_C3HHeJ_G0033467.1 mouse_genomes_project 8 72683330 72705521 + MGP_C3HHeJ_P0089024 1700030K09Rik protein_coding protein_coding MGP_C3HHeJ_T0089025.1 MGP_C3HHeJ_G0033467.1 mouse_genomes_project 8 72683382 72705161 + MGP_C3HHeJ_P0089025 1700030K09Rik protein_coding protein_coding MGP_C3HHeJ_T0089026.1 MGP_C3HHeJ_G0033467.1 mouse_genomes_project 8 72701964 72702944 + 1700030K09Rik protein_coding retained_intron MGP_C3HHeJ_T0088732.1 MGP_C3HHeJ_G0033384.1 mouse_genomes_project 8 70144399 70174730 - Slc25a42 protein_coding retained_intron MGP_C3HHeJ_T0088733.1 MGP_C3HHeJ_G0033384.1 mouse_genomes_project 8 70144399 70174730 - MGP_C3HHeJ_P0088733 Slc25a42 protein_coding protein_coding MGP_C3HHeJ_T0088734.1 MGP_C3HHeJ_G0033384.1 mouse_genomes_project 8 70144399 70174681 - MGP_C3HHeJ_P0088734 Slc25a42 protein_coding protein_coding MGP_C3HHeJ_T0088735.1 MGP_C3HHeJ_G0033384.1 mouse_genomes_project 8 70147652 70174730 - Slc25a42 protein_coding retained_intron MGP_C3HHeJ_T0088736.1 MGP_C3HHeJ_G0033384.1 mouse_genomes_project 8 70152332 70174730 - Slc25a42 protein_coding retained_intron MGP_C3HHeJ_T0090316.1 MGP_C3HHeJ_G0033894.1 mouse_genomes_project 8 123629087 123631812 + MGP_C3HHeJ_P0090316 Foxc2 protein_coding protein_coding MGP_C3HHeJ_T0087913.1 MGP_C3HHeJ_G0033123.1 mouse_genomes_project 8 19816840 19817316 + MGP_C3HHeJ_P0087913 Defb2 protein_coding protein_coding MGP_C3HHeJ_T0097935.1 MGP_C3HHeJ_G0036147.1 mouse_genomes_project 8 89868267 89869195 - pseudogene pseudogene MGP_C3HHeJ_T0005312.1 MGP_C3HHeJ_G0004494.1 mouse_genomes_project 8 108840768 108842282 - Gm16208 antisense antisense MGP_C3HHeJ_T0088437.1 MGP_C3HHeJ_G0033295.1 mouse_genomes_project 8 48674772 48681101 + protein_coding processed_transcript MGP_C3HHeJ_T0088438.1 MGP_C3HHeJ_G0033295.1 mouse_genomes_project 8 48674799 48809231 + MGP_C3HHeJ_P0088438 protein_coding protein_coding MGP_C3HHeJ_T0088439.1 MGP_C3HHeJ_G0033295.1 mouse_genomes_project 8 48769375 48809202 + MGP_C3HHeJ_P0088439 protein_coding protein_coding MGP_C3HHeJ_T0088440.1 MGP_C3HHeJ_G0033295.1 mouse_genomes_project 8 48791545 48828933 + protein_coding processed_transcript MGP_C3HHeJ_T0009107.1 MGP_C3HHeJ_G0007309.1 mouse_genomes_project 8 123713665 123716787 - 5033426O07Rik lincRNA lincRNA MGP_C3HHeJ_T0088466.1 MGP_C3HHeJ_G0033305.1 mouse_genomes_project 8 55551861 55657589 + Glra3 protein_coding processed_transcript MGP_C3HHeJ_T0088467.1 MGP_C3HHeJ_G0033305.1 mouse_genomes_project 8 55551910 55737532 + MGP_C3HHeJ_P0088467 Glra3 protein_coding protein_coding MGP_C3HHeJ_T0089944.1 MGP_C3HHeJ_G0033779.1 mouse_genomes_project 8 108858487 108869607 - MGP_C3HHeJ_P0089944 Cog8 protein_coding protein_coding MGP_C3HHeJ_T0089945.1 MGP_C3HHeJ_G0033779.1 mouse_genomes_project 8 108858493 108869602 - MGP_C3HHeJ_P0089945 Cog8 protein_coding protein_coding MGP_C3HHeJ_T0089947.1 MGP_C3HHeJ_G0033779.1 mouse_genomes_project 8 108865599 108867179 - Cog8 protein_coding retained_intron MGP_C3HHeJ_T0089948.1 MGP_C3HHeJ_G0033779.1 mouse_genomes_project 8 108865829 108869416 - MGP_C3HHeJ_P0089948 Cog8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088691.1 MGP_C3HHeJ_G0033372.1 mouse_genomes_project 8 69850959 69852294 + MGP_C3HHeJ_P0088691 Tssk6 protein_coding protein_coding MGP_C3HHeJ_T0090599.1 MGP_C3HHeJ_G0033976.1 mouse_genomes_project 8 128947299 129049050 + MGP_C3HHeJ_P0090599 Slc35f3 protein_coding protein_coding MGP_C3HHeJ_T0090522.1 MGP_C3HHeJ_G0033948.1 mouse_genomes_project 8 126425085 126428054 - MGP_C3HHeJ_P0090522 Acta1 protein_coding protein_coding MGP_C3HHeJ_T0088256.1 MGP_C3HHeJ_G0033244.1 mouse_genomes_project 8 39498901 39505907 + MGP_C3HHeJ_P0088256 Adam24 protein_coding protein_coding MGP_C3HHeJ_T0089622.1 MGP_C3HHeJ_G0033653.1 mouse_genomes_project 8 95693908 95700840 + Cx3cl1 protein_coding processed_transcript MGP_C3HHeJ_T0089623.1 MGP_C3HHeJ_G0033653.1 mouse_genomes_project 8 95693908 95704313 + MGP_C3HHeJ_P0089623 Cx3cl1 protein_coding protein_coding MGP_C3HHeJ_T0089624.1 MGP_C3HHeJ_G0033653.1 mouse_genomes_project 8 95694103 95701533 + MGP_C3HHeJ_P0089624 Cx3cl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089625.1 MGP_C3HHeJ_G0033653.1 mouse_genomes_project 8 95694124 95701917 + MGP_C3HHeJ_P0089625 Cx3cl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005254.1 MGP_C3HHeJ_G0004449.1 mouse_genomes_project 8 10246410 10251938 - Gm15350 antisense antisense MGP_C3HHeJ_T0005255.1 MGP_C3HHeJ_G0004449.1 mouse_genomes_project 8 10246410 10249995 - Gm15350 antisense antisense MGP_C3HHeJ_T0009046.1 MGP_C3HHeJ_G0007270.1 mouse_genomes_project 8 87734590 87742278 + Gm5118 lincRNA lincRNA MGP_C3HHeJ_T0087718.1 MGP_C3HHeJ_G0033056.1 mouse_genomes_project 8 9783496 9788276 + MGP_C3HHeJ_P0087718 Sox1 protein_coding protein_coding MGP_C3HHeJ_T0088504.1 MGP_C3HHeJ_G0033319.1 mouse_genomes_project 8 60532185 60549111 + MGP_C3HHeJ_P0088504 Hpf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088505.1 MGP_C3HHeJ_G0033319.1 mouse_genomes_project 8 60532212 60549109 + MGP_C3HHeJ_P0088505 Hpf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088506.1 MGP_C3HHeJ_G0033319.1 mouse_genomes_project 8 60532218 60549116 + MGP_C3HHeJ_P0088506 Hpf1 protein_coding protein_coding MGP_C3HHeJ_T0088507.1 MGP_C3HHeJ_G0033319.1 mouse_genomes_project 8 60532218 60547521 + MGP_C3HHeJ_P0088507 Hpf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088508.1 MGP_C3HHeJ_G0033319.1 mouse_genomes_project 8 60532256 60538820 + Hpf1 protein_coding retained_intron MGP_C3HHeJ_T0102326.1 MGP_C3HHeJ_G0040289.1 mouse_genomes_project 8 17116698 17117696 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009101.1 MGP_C3HHeJ_G0007305.1 mouse_genomes_project 8 123125270 123135597 + Gm26537 lincRNA lincRNA MGP_C3HHeJ_T0100936.1 MGP_C3HHeJ_G0039130.1 mouse_genomes_project 8 131525005 131525132 + Gm26100 snoRNA snoRNA MGP_C3HHeJ_T0009063.1 MGP_C3HHeJ_G0007280.1 mouse_genomes_project 8 88716405 88800412 - lincRNA lincRNA MGP_C3HHeJ_T0100879.1 MGP_C3HHeJ_G0039073.1 mouse_genomes_project 8 16170318 16170447 - Gm25763 snoRNA snoRNA MGP_C3HHeJ_T0099650.1 MGP_C3HHeJ_G0037844.1 mouse_genomes_project 8 82666517 82666580 - Gm25267 snRNA snRNA MGP_C3HHeJ_T0090132.1 MGP_C3HHeJ_G0033839.1 mouse_genomes_project 8 114695716 114988410 + Cntnap4 protein_coding retained_intron MGP_C3HHeJ_T0090133.1 MGP_C3HHeJ_G0033839.1 mouse_genomes_project 8 114695716 115011665 + MGP_C3HHeJ_P0090133 Cntnap4 protein_coding protein_coding MGP_C3HHeJ_T0090134.1 MGP_C3HHeJ_G0033839.1 mouse_genomes_project 8 114695716 115011653 + MGP_C3HHeJ_P0090134 Cntnap4 protein_coding protein_coding MGP_C3HHeJ_T0090135.1 MGP_C3HHeJ_G0033839.1 mouse_genomes_project 8 114695728 114927109 + Cntnap4 protein_coding retained_intron MGP_C3HHeJ_T0090136.1 MGP_C3HHeJ_G0033839.1 mouse_genomes_project 8 114857845 114860820 + Cntnap4 protein_coding processed_transcript MGP_C3HHeJ_T0090137.1 MGP_C3HHeJ_G0033839.1 mouse_genomes_project 8 114909913 114931606 + Cntnap4 protein_coding processed_transcript MGP_C3HHeJ_T0089491.1 MGP_C3HHeJ_G0033608.1 mouse_genomes_project 8 89350487 89391995 + MGP_C3HHeJ_P0089491 Nod2 protein_coding protein_coding MGP_C3HHeJ_T0089492.1 MGP_C3HHeJ_G0033608.1 mouse_genomes_project 8 89350556 89369684 + Nod2 protein_coding retained_intron MGP_C3HHeJ_T0089493.1 MGP_C3HHeJ_G0033608.1 mouse_genomes_project 8 89350749 89390451 + MGP_C3HHeJ_P0089493 Nod2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089494.1 MGP_C3HHeJ_G0033608.1 mouse_genomes_project 8 89354513 89391995 + MGP_C3HHeJ_P0089494 Nod2 protein_coding protein_coding MGP_C3HHeJ_T0089880.1 MGP_C3HHeJ_G0033753.1 mouse_genomes_project 8 107672562 107674431 - MGP_C3HHeJ_P0089880 Ctrl protein_coding protein_coding MGP_C3HHeJ_T0087803.1 MGP_C3HHeJ_G0033077.1 mouse_genomes_project 8 11015627 11027356 - MGP_C3HHeJ_P0087803 1700029H14Rik protein_coding protein_coding MGP_C3HHeJ_T0087804.1 MGP_C3HHeJ_G0033077.1 mouse_genomes_project 8 11015627 11027343 - MGP_C3HHeJ_P0087804 1700029H14Rik protein_coding protein_coding MGP_C3HHeJ_T0087805.1 MGP_C3HHeJ_G0033077.1 mouse_genomes_project 8 11015905 11027300 - MGP_C3HHeJ_P0087805 1700029H14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087806.1 MGP_C3HHeJ_G0033077.1 mouse_genomes_project 8 11015926 11027299 - MGP_C3HHeJ_P0087806 1700029H14Rik protein_coding protein_coding MGP_C3HHeJ_T0087807.1 MGP_C3HHeJ_G0033077.1 mouse_genomes_project 8 11020849 11027300 - MGP_C3HHeJ_P0087807 1700029H14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089445.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87257304 87349441 + MGP_C3HHeJ_P0089445 Lonp2 protein_coding protein_coding MGP_C3HHeJ_T0089446.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87257304 87356684 + MGP_C3HHeJ_P0089446 Lonp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089447.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87257348 87274948 + Lonp2 protein_coding processed_transcript MGP_C3HHeJ_T0089448.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87257366 87349441 + MGP_C3HHeJ_P0089448 Lonp2 protein_coding protein_coding MGP_C3HHeJ_T0089449.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87264678 87299583 + Lonp2 protein_coding processed_transcript MGP_C3HHeJ_T0089450.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87284850 87349442 + MGP_C3HHeJ_P0089450 Lonp2 protein_coding protein_coding MGP_C3HHeJ_T0089451.1 MGP_C3HHeJ_G0033595.1 mouse_genomes_project 8 87284850 87349442 + MGP_C3HHeJ_P0089451 Lonp2 protein_coding protein_coding MGP_C3HHeJ_T0018233.1 MGP_C3HHeJ_G0015474.1 mouse_genomes_project 8 44849268 44863946 + processed_transcript processed_transcript MGP_C3HHeJ_T0009003.1 MGP_C3HHeJ_G0007233.1 mouse_genomes_project 8 31376554 31445344 - Gm3985 lincRNA lincRNA MGP_C3HHeJ_T0009004.1 MGP_C3HHeJ_G0007233.1 mouse_genomes_project 8 31378528 31433814 - Gm3985 lincRNA lincRNA MGP_C3HHeJ_T0090011.1 MGP_C3HHeJ_G0033799.1 mouse_genomes_project 8 111798678 111835258 + Phlpp2 protein_coding retained_intron MGP_C3HHeJ_T0090012.1 MGP_C3HHeJ_G0033799.1 mouse_genomes_project 8 111798755 111871712 + MGP_C3HHeJ_P0090012 Phlpp2 protein_coding protein_coding MGP_C3HHeJ_T0010892.1 MGP_C3HHeJ_G0009025.1 mouse_genomes_project 8 84571093 84571212 - Mir1199 miRNA miRNA MGP_C3HHeJ_T0088249.1 MGP_C3HHeJ_G0033242.1 mouse_genomes_project 8 39327492 39367560 + MGP_C3HHeJ_P0088249 Vps37a protein_coding protein_coding MGP_C3HHeJ_T0089687.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96640622 96672473 + MGP_C3HHeJ_P0089687 Ndrg4 protein_coding protein_coding MGP_C3HHeJ_T0089688.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96641727 96678890 + MGP_C3HHeJ_P0089688 Ndrg4 protein_coding protein_coding MGP_C3HHeJ_T0089689.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96641883 96678886 + MGP_C3HHeJ_P0089689 Ndrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089690.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96641985 96678899 + MGP_C3HHeJ_P0089690 Ndrg4 protein_coding protein_coding MGP_C3HHeJ_T0089691.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96669888 96675078 + Ndrg4 protein_coding processed_transcript MGP_C3HHeJ_T0089692.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96672438 96675576 + Ndrg4 protein_coding retained_intron MGP_C3HHeJ_T0089693.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96673235 96677852 + Ndrg4 protein_coding processed_transcript MGP_C3HHeJ_T0089694.1 MGP_C3HHeJ_G0033676.1 mouse_genomes_project 8 96675830 96677149 + Ndrg4 protein_coding retained_intron MGP_C3HHeJ_T0089304.1 MGP_C3HHeJ_G0033556.1 mouse_genomes_project 8 85417684 85426042 - MGP_C3HHeJ_P0089304 Dand5 protein_coding protein_coding MGP_C3HHeJ_T0010860.1 MGP_C3HHeJ_G0008993.1 mouse_genomes_project 8 10565989 10566050 + Mir7065 miRNA miRNA MGP_C3HHeJ_T0087950.1 MGP_C3HHeJ_G0033146.1 mouse_genomes_project 8 20670982 20697429 - MGP_C3HHeJ_P0087950 Polb protein_coding protein_coding MGP_C3HHeJ_T0010922.1 MGP_C3HHeJ_G0009055.1 mouse_genomes_project 8 112482482 112482542 + miRNA miRNA MGP_C3HHeJ_T0011630.1 MGP_C3HHeJ_G0009763.1 mouse_genomes_project 8 95618543 95618813 - Gm22846 misc_RNA misc_RNA MGP_C3HHeJ_T0010894.1 MGP_C3HHeJ_G0009027.1 mouse_genomes_project 8 84747873 84747945 - Mir181d miRNA miRNA MGP_C3HHeJ_T0088417.1 MGP_C3HHeJ_G0033288.1 mouse_genomes_project 8 46934186 46938774 - MGP_C3HHeJ_P0088417 Cdkn2aip protein_coding protein_coding MGP_C3HHeJ_T0090386.1 MGP_C3HHeJ_G0033912.1 mouse_genomes_project 8 125007651 125017542 - MGP_C3HHeJ_P0090386 Rnf166 protein_coding protein_coding MGP_C3HHeJ_T0090387.1 MGP_C3HHeJ_G0033912.1 mouse_genomes_project 8 125008365 125009731 - Rnf166 protein_coding retained_intron MGP_C3HHeJ_T0090388.1 MGP_C3HHeJ_G0033912.1 mouse_genomes_project 8 125009512 125017166 - Rnf166 protein_coding processed_transcript MGP_C3HHeJ_T0088449.1 MGP_C3HHeJ_G0033299.1 mouse_genomes_project 8 54071472 54081038 - MGP_C3HHeJ_P0088449 Spcs3 protein_coding protein_coding MGP_C3HHeJ_T0088257.1 MGP_C3HHeJ_G0033245.1 mouse_genomes_project 8 39696440 39771578 + MGP_C3HHeJ_P0088257 Slc7a2 protein_coding protein_coding MGP_C3HHeJ_T0088258.1 MGP_C3HHeJ_G0033245.1 mouse_genomes_project 8 39696606 39745091 + MGP_C3HHeJ_P0088258 Slc7a2 protein_coding protein_coding MGP_C3HHeJ_T0088259.1 MGP_C3HHeJ_G0033245.1 mouse_genomes_project 8 39742895 39765742 + MGP_C3HHeJ_P0088259 Slc7a2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088260.1 MGP_C3HHeJ_G0033245.1 mouse_genomes_project 8 39744544 39766997 + MGP_C3HHeJ_P0088260 Slc7a2 protein_coding protein_coding MGP_C3HHeJ_T0009014.1 MGP_C3HHeJ_G0007241.1 mouse_genomes_project 8 40706508 40912449 + 2810404M03Rik lincRNA lincRNA MGP_C3HHeJ_T0088159.1 MGP_C3HHeJ_G0033213.1 mouse_genomes_project 8 32139800 32162012 - MGP_C3HHeJ_P0088159 Ubxn8 protein_coding protein_coding MGP_C3HHeJ_T0008987.1 MGP_C3HHeJ_G0007221.1 mouse_genomes_project 8 10124412 10136445 - Gm15348 lincRNA lincRNA MGP_C3HHeJ_T0089914.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107970286 108014507 + MGP_C3HHeJ_P0089914 Prmt7 protein_coding protein_coding MGP_C3HHeJ_T0089915.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107970373 107996294 + MGP_C3HHeJ_P0089915 Prmt7 protein_coding protein_coding MGP_C3HHeJ_T0089916.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107970387 108004090 + Prmt7 protein_coding retained_intron MGP_C3HHeJ_T0089917.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107970568 107987242 + MGP_C3HHeJ_P0089917 Prmt7 protein_coding protein_coding MGP_C3HHeJ_T0089918.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107971876 107998964 + MGP_C3HHeJ_P0089918 Prmt7 protein_coding protein_coding MGP_C3HHeJ_T0089919.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107995429 107998299 + Prmt7 protein_coding processed_transcript MGP_C3HHeJ_T0089920.1 MGP_C3HHeJ_G0033766.1 mouse_genomes_project 8 107998665 108005628 + Prmt7 protein_coding processed_transcript MGP_C3HHeJ_T0089684.1 MGP_C3HHeJ_G0033674.1 mouse_genomes_project 8 96514130 96531466 - MGP_C3HHeJ_P0089684 Prss54 protein_coding protein_coding MGP_C3HHeJ_T0089685.1 MGP_C3HHeJ_G0033674.1 mouse_genomes_project 8 96514289 96531204 - MGP_C3HHeJ_P0089685 Prss54 protein_coding protein_coding MGP_C3HHeJ_T0089426.1 MGP_C3HHeJ_G0033591.1 mouse_genomes_project 8 86277012 86331369 - MGP_C3HHeJ_P0089426 Neto2 protein_coding protein_coding MGP_C3HHeJ_T0089427.1 MGP_C3HHeJ_G0033591.1 mouse_genomes_project 8 86277139 86341065 - MGP_C3HHeJ_P0089427 Neto2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0018261.1 MGP_C3HHeJ_G0015483.1 mouse_genomes_project 8 96777859 96792804 + 4930513N10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018262.1 MGP_C3HHeJ_G0015483.1 mouse_genomes_project 8 96778002 96781232 + 4930513N10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018263.1 MGP_C3HHeJ_G0015483.1 mouse_genomes_project 8 96780062 96792773 + 4930513N10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0089715.1 MGP_C3HHeJ_G0033682.1 mouse_genomes_project 8 100848203 100848636 + MGP_C3HHeJ_P0089715 protein_coding protein_coding MGP_C3HHeJ_T0088080.1 MGP_C3HHeJ_G0033175.1 mouse_genomes_project 8 23897907 23929266 - MGP_C3HHeJ_P0088080 Ddhd2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087794.1 MGP_C3HHeJ_G0033071.1 mouse_genomes_project 8 10730792 10772737 + MGP_C3HHeJ_P0087794 Tmco3 protein_coding protein_coding MGP_C3HHeJ_T0087795.1 MGP_C3HHeJ_G0033071.1 mouse_genomes_project 8 10734531 10771215 + MGP_C3HHeJ_P0087795 Tmco3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099668.1 MGP_C3HHeJ_G0037862.1 mouse_genomes_project 8 125062307 125062414 - Gm26497 snRNA snRNA MGP_C3HHeJ_T0088594.1 MGP_C3HHeJ_G0033342.1 mouse_genomes_project 8 66550715 66560077 + MGP_C3HHeJ_P0088594 Npy1r protein_coding protein_coding MGP_C3HHeJ_T0089132.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 81822003 82243986 + MGP_C3HHeJ_P0089132 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089133.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 81822005 82578777 + MGP_C3HHeJ_P0089133 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089134.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 81822009 82634822 + MGP_C3HHeJ_P0089134 Inpp4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089135.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 81822009 82634590 + MGP_C3HHeJ_P0089135 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089136.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 81822009 82637074 + MGP_C3HHeJ_P0089136 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089137.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82215444 82634595 + MGP_C3HHeJ_P0089137 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089138.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82266413 82314909 + Inpp4b protein_coding processed_transcript MGP_C3HHeJ_T0089139.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82269400 82394728 + Inpp4b protein_coding processed_transcript MGP_C3HHeJ_T0089140.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82273174 82578777 + MGP_C3HHeJ_P0089140 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089141.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82353499 82458164 + Inpp4b protein_coding processed_transcript MGP_C3HHeJ_T0089142.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82366846 82634604 + MGP_C3HHeJ_P0089142 Inpp4b protein_coding protein_coding MGP_C3HHeJ_T0089143.1 MGP_C3HHeJ_G0033507.1 mouse_genomes_project 8 82400800 82413010 + Inpp4b protein_coding processed_transcript MGP_C3HHeJ_T0005281.1 MGP_C3HHeJ_G0004468.1 mouse_genomes_project 8 44849265 44946662 - Sorbs2os antisense antisense MGP_C3HHeJ_T0089456.1 MGP_C3HHeJ_G0033599.1 mouse_genomes_project 8 88215915 88243331 + MGP_C3HHeJ_P0089456 4933402J07Rik protein_coding protein_coding MGP_C3HHeJ_T0011627.1 MGP_C3HHeJ_G0009760.1 mouse_genomes_project 8 84306971 84307258 + Gm22024 misc_RNA misc_RNA MGP_C3HHeJ_T0089220.1 MGP_C3HHeJ_G0033534.1 mouse_genomes_project 8 84580962 84588629 + Palm3 protein_coding retained_intron MGP_C3HHeJ_T0089221.1 MGP_C3HHeJ_G0033534.1 mouse_genomes_project 8 84580962 84589736 + MGP_C3HHeJ_P0089221 Palm3 protein_coding protein_coding MGP_C3HHeJ_T0089222.1 MGP_C3HHeJ_G0033534.1 mouse_genomes_project 8 84585588 84586563 + Palm3 protein_coding retained_intron MGP_C3HHeJ_T0005291.1 MGP_C3HHeJ_G0004477.1 mouse_genomes_project 8 66284239 66287586 - Gm15356 antisense antisense MGP_C3HHeJ_T0088696.1 MGP_C3HHeJ_G0033374.1 mouse_genomes_project 8 69969220 69995718 - MGP_C3HHeJ_P0088696 Mau2 protein_coding protein_coding MGP_C3HHeJ_T0088697.1 MGP_C3HHeJ_G0033374.1 mouse_genomes_project 8 69969220 69995767 - MGP_C3HHeJ_P0088697 Mau2 protein_coding protein_coding MGP_C3HHeJ_T0089644.1 MGP_C3HHeJ_G0033657.1 mouse_genomes_project 8 95781558 95788276 + MGP_C3HHeJ_P0089644 Polr2c protein_coding protein_coding MGP_C3HHeJ_T0089682.1 MGP_C3HHeJ_G0033672.1 mouse_genomes_project 8 96394901 96441360 - MGP_C3HHeJ_P0089682 Csnk2a2 protein_coding protein_coding MGP_C3HHeJ_T0009092.1 MGP_C3HHeJ_G0007298.1 mouse_genomes_project 8 110980170 111157429 + D030068K23Rik lincRNA lincRNA MGP_C3HHeJ_T0009093.1 MGP_C3HHeJ_G0007298.1 mouse_genomes_project 8 110980171 111133471 + D030068K23Rik lincRNA lincRNA MGP_C3HHeJ_T0009094.1 MGP_C3HHeJ_G0007298.1 mouse_genomes_project 8 111153421 111179525 + D030068K23Rik lincRNA lincRNA MGP_C3HHeJ_T0102321.1 MGP_C3HHeJ_G0040284.1 mouse_genomes_project 8 3364 5221 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0090382.1 MGP_C3HHeJ_G0033908.1 mouse_genomes_project 8 124963318 124965263 + MGP_C3HHeJ_P0090382 Il17c protein_coding protein_coding MGP_C3HHeJ_T0089701.1 MGP_C3HHeJ_G0033678.1 mouse_genomes_project 8 96683376 96778492 - MGP_C3HHeJ_P0089701 Cnot1 protein_coding protein_coding MGP_C3HHeJ_T0089702.1 MGP_C3HHeJ_G0033678.1 mouse_genomes_project 8 96683376 96778492 - MGP_C3HHeJ_P0089702 Cnot1 protein_coding protein_coding MGP_C3HHeJ_T0100920.1 MGP_C3HHeJ_G0039114.1 mouse_genomes_project 8 96722444 96722577 - Gm26265 snoRNA snoRNA MGP_C3HHeJ_T0089551.1 MGP_C3HHeJ_G0033629.1 mouse_genomes_project 8 94073668 94105572 - MGP_C3HHeJ_P0089551 Ces1e protein_coding protein_coding MGP_C3HHeJ_T0089552.1 MGP_C3HHeJ_G0033629.1 mouse_genomes_project 8 94073854 94105571 - MGP_C3HHeJ_P0089552 Ces1e protein_coding protein_coding MGP_C3HHeJ_T0089553.1 MGP_C3HHeJ_G0033629.1 mouse_genomes_project 8 94084515 94093699 - Ces1e protein_coding retained_intron MGP_C3HHeJ_T0010866.1 MGP_C3HHeJ_G0008999.1 mouse_genomes_project 8 21165596 21165721 - Gm44365 miRNA miRNA MGP_C3HHeJ_T0008993.1 MGP_C3HHeJ_G0007224.1 mouse_genomes_project 8 20429427 20430303 + 1810012K16Rik lincRNA lincRNA MGP_C3HHeJ_T0088154.1 MGP_C3HHeJ_G0033211.1 mouse_genomes_project 8 32030815 32071688 + MGP_C3HHeJ_P0088154 Tex15 protein_coding protein_coding MGP_C3HHeJ_T0088155.1 MGP_C3HHeJ_G0033211.1 mouse_genomes_project 8 32031399 32102372 + MGP_C3HHeJ_P0088155 Tex15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088156.1 MGP_C3HHeJ_G0033211.1 mouse_genomes_project 8 32031399 32089566 + MGP_C3HHeJ_P0088156 Tex15 protein_coding protein_coding MGP_C3HHeJ_T0088157.1 MGP_C3HHeJ_G0033211.1 mouse_genomes_project 8 32086551 32102372 + MGP_C3HHeJ_P0088157 Tex15 protein_coding protein_coding MGP_C3HHeJ_T0009015.1 MGP_C3HHeJ_G0007242.1 mouse_genomes_project 8 44707474 44716707 - lincRNA lincRNA MGP_C3HHeJ_T0005332.1 MGP_C3HHeJ_G0004512.1 mouse_genomes_project 8 126367768 126370001 - 2810455O05Rik antisense antisense MGP_C3HHeJ_T0089734.1 MGP_C3HHeJ_G0033692.1 mouse_genomes_project 8 105888382 105888603 + MGP_C3HHeJ_P0089734 Gm11020 protein_coding protein_coding MGP_C3HHeJ_T0090143.1 MGP_C3HHeJ_G0033843.1 mouse_genomes_project 8 116290372 116312347 + MGP_C3HHeJ_P0090143 Nudt7 protein_coding protein_coding MGP_C3HHeJ_T0090144.1 MGP_C3HHeJ_G0033843.1 mouse_genomes_project 8 116290389 116309913 + MGP_C3HHeJ_P0090144 Nudt7 protein_coding protein_coding MGP_C3HHeJ_T0090145.1 MGP_C3HHeJ_G0033843.1 mouse_genomes_project 8 116290433 116309923 + MGP_C3HHeJ_P0090145 Nudt7 protein_coding protein_coding MGP_C3HHeJ_T0090146.1 MGP_C3HHeJ_G0033843.1 mouse_genomes_project 8 116290456 116309917 + MGP_C3HHeJ_P0090146 Nudt7 protein_coding protein_coding MGP_C3HHeJ_T0090147.1 MGP_C3HHeJ_G0033843.1 mouse_genomes_project 8 116290457 116306001 + MGP_C3HHeJ_P0090147 Nudt7 protein_coding protein_coding MGP_C3HHeJ_T0087672.1 MGP_C3HHeJ_G0033035.1 mouse_genomes_project 8 2703144 2705903 + MGP_C3HHeJ_P0087672 protein_coding protein_coding MGP_C3HHeJ_T0088719.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70129994 70140990 + Tmem161a protein_coding processed_transcript MGP_C3HHeJ_T0088720.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70130043 70143727 + MGP_C3HHeJ_P0088720 Tmem161a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088721.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70130051 70142935 + MGP_C3HHeJ_P0088721 Tmem161a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088722.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70130054 70134840 + Tmem161a protein_coding retained_intron MGP_C3HHeJ_T0088723.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70130054 70135114 + Tmem161a protein_coding processed_transcript MGP_C3HHeJ_T0088724.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70130057 70140798 + MGP_C3HHeJ_P0088724 Tmem161a protein_coding protein_coding MGP_C3HHeJ_T0088725.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70130076 70142199 + MGP_C3HHeJ_P0088725 Tmem161a protein_coding protein_coding MGP_C3HHeJ_T0088726.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70131914 70142927 + MGP_C3HHeJ_P0088726 Tmem161a protein_coding protein_coding MGP_C3HHeJ_T0088727.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70134529 70135247 + Tmem161a protein_coding retained_intron MGP_C3HHeJ_T0088728.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70134924 70136676 + Tmem161a protein_coding processed_transcript MGP_C3HHeJ_T0088729.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70135175 70141272 + MGP_C3HHeJ_P0088729 Tmem161a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088730.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70136518 70141373 + Tmem161a protein_coding retained_intron MGP_C3HHeJ_T0088731.1 MGP_C3HHeJ_G0033383.1 mouse_genomes_project 8 70140598 70142092 + Tmem161a protein_coding retained_intron MGP_C3HHeJ_T0089738.1 MGP_C3HHeJ_G0033696.1 mouse_genomes_project 8 106004603 106032254 - MGP_C3HHeJ_P0089738 Dync1li2 protein_coding protein_coding MGP_C3HHeJ_T0097939.1 MGP_C3HHeJ_G0036151.1 mouse_genomes_project 8 120166609 120167782 + pseudogene pseudogene MGP_C3HHeJ_T0089014.1 MGP_C3HHeJ_G0033462.1 mouse_genomes_project 8 72456062 72460141 + MGP_C3HHeJ_P0089014 Fam32a protein_coding protein_coding MGP_C3HHeJ_T0088943.1 MGP_C3HHeJ_G0033444.1 mouse_genomes_project 8 71662035 71680670 + MGP_C3HHeJ_P0088943 Slc27a1 protein_coding protein_coding MGP_C3HHeJ_T0087917.1 MGP_C3HHeJ_G0033127.1 mouse_genomes_project 8 19939866 19942778 - MGP_C3HHeJ_P0087917 Defb15 protein_coding protein_coding MGP_C3HHeJ_T0087639.1 MGP_C3HHeJ_G0033026.1 mouse_genomes_project 8 1237397 1239024 - MGP_C3HHeJ_P0087639 Ctxn1 protein_coding protein_coding MGP_C3HHeJ_T0018220.1 MGP_C3HHeJ_G0015466.1 mouse_genomes_project 8 5077622 5079688 + Gm28262 processed_transcript lincRNA MGP_C3HHeJ_T0018221.1 MGP_C3HHeJ_G0015466.1 mouse_genomes_project 8 5079651 5085182 + Gm28262 processed_transcript TEC MGP_C3HHeJ_T0088481.1 MGP_C3HHeJ_G0033310.1 mouse_genomes_project 8 57054148 57076006 + MGP_C3HHeJ_P0088481 Scrg1 protein_coding protein_coding MGP_C3HHeJ_T0090087.1 MGP_C3HHeJ_G0033823.1 mouse_genomes_project 8 113358463 113386653 - MGP_C3HHeJ_P0090087 Mlkl protein_coding protein_coding MGP_C3HHeJ_T0090088.1 MGP_C3HHeJ_G0033823.1 mouse_genomes_project 8 113358466 113386653 - MGP_C3HHeJ_P0090088 Mlkl protein_coding protein_coding MGP_C3HHeJ_T0090089.1 MGP_C3HHeJ_G0033823.1 mouse_genomes_project 8 113358468 113364822 - Mlkl protein_coding processed_transcript MGP_C3HHeJ_T0090090.1 MGP_C3HHeJ_G0033823.1 mouse_genomes_project 8 113380318 113386269 - MGP_C3HHeJ_P0090090 Mlkl protein_coding protein_coding MGP_C3HHeJ_T0090559.1 MGP_C3HHeJ_G0033962.1 mouse_genomes_project 8 127376664 127423917 + MGP_C3HHeJ_P0090559 Trim67 protein_coding protein_coding MGP_C3HHeJ_T0090560.1 MGP_C3HHeJ_G0033962.1 mouse_genomes_project 8 127376737 127423928 + MGP_C3HHeJ_P0090560 Trim67 protein_coding protein_coding MGP_C3HHeJ_T0089225.1 MGP_C3HHeJ_G0033537.1 mouse_genomes_project 8 84624591 84626170 - MGP_C3HHeJ_P0089225 Gm10643 protein_coding protein_coding MGP_C3HHeJ_T0089059.1 MGP_C3HHeJ_G0033480.1 mouse_genomes_project 8 75353079 75359910 + MGP_C3HHeJ_P0089059 Hmox1 protein_coding protein_coding MGP_C3HHeJ_T0089060.1 MGP_C3HHeJ_G0033480.1 mouse_genomes_project 8 75353129 75355760 + Hmox1 protein_coding retained_intron MGP_C3HHeJ_T0089061.1 MGP_C3HHeJ_G0033480.1 mouse_genomes_project 8 75353338 75356513 + MGP_C3HHeJ_P0089061 Hmox1 protein_coding protein_coding MGP_C3HHeJ_T0011635.1 MGP_C3HHeJ_G0009768.1 mouse_genomes_project 8 123205754 123206009 - Gm24239 misc_RNA misc_RNA MGP_C3HHeJ_T0089590.1 MGP_C3HHeJ_G0033639.1 mouse_genomes_project 8 95040485 95042313 + MGP_C3HHeJ_P0089590 Mt4 protein_coding protein_coding MGP_C3HHeJ_T0089727.1 MGP_C3HHeJ_G0033689.1 mouse_genomes_project 8 105797576 105812344 + MGP_C3HHeJ_P0089727 Cklf protein_coding protein_coding MGP_C3HHeJ_T0089728.1 MGP_C3HHeJ_G0033689.1 mouse_genomes_project 8 105797605 105816400 + MGP_C3HHeJ_P0089728 Cklf protein_coding protein_coding MGP_C3HHeJ_T0087989.1 MGP_C3HHeJ_G0033155.1 mouse_genomes_project 8 21313759 21330509 - MGP_C3HHeJ_P0087989 Golga7 protein_coding protein_coding MGP_C3HHeJ_T0087990.1 MGP_C3HHeJ_G0033155.1 mouse_genomes_project 8 21313759 21330456 - MGP_C3HHeJ_P0087990 Golga7 protein_coding protein_coding MGP_C3HHeJ_T0087991.1 MGP_C3HHeJ_G0033155.1 mouse_genomes_project 8 21314859 21317772 - Golga7 protein_coding retained_intron MGP_C3HHeJ_T0087741.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10291677 10298018 + MGP_C3HHeJ_P0087741 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087742.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10291698 10441673 + MGP_C3HHeJ_P0087742 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087743.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10291819 10309051 + Mcf2l protein_coding processed_transcript MGP_C3HHeJ_T0087744.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10334198 10443525 + MGP_C3HHeJ_P0087744 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087745.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10334835 10443129 + MGP_C3HHeJ_P0087745 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087746.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10334853 10414853 + Mcf2l protein_coding processed_transcript MGP_C3HHeJ_T0087747.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10334917 10441929 + MGP_C3HHeJ_P0087747 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087748.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10334918 10437580 + MGP_C3HHeJ_P0087748 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087749.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10345571 10440797 + MGP_C3HHeJ_P0087749 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087750.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10366705 10410842 + Mcf2l protein_coding retained_intron MGP_C3HHeJ_T0087751.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10366739 10436651 + MGP_C3HHeJ_P0087751 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087752.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10368202 10441895 + MGP_C3HHeJ_P0087752 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087753.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10368270 10443121 + MGP_C3HHeJ_P0087753 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087754.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10406970 10434168 + MGP_C3HHeJ_P0087754 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087755.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10406985 10443125 + MGP_C3HHeJ_P0087755 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087756.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10423380 10443125 + MGP_C3HHeJ_P0087756 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087757.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10434115 10443147 + MGP_C3HHeJ_P0087757 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087758.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10434131 10440714 + MGP_C3HHeJ_P0087758 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087759.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10434439 10440059 + MGP_C3HHeJ_P0087759 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087760.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10435683 10437987 + Mcf2l protein_coding retained_intron MGP_C3HHeJ_T0087761.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10436182 10441619 + MGP_C3HHeJ_P0087761 Mcf2l protein_coding protein_coding MGP_C3HHeJ_T0087762.1 MGP_C3HHeJ_G0033061.1 mouse_genomes_project 8 10439797 10441627 + Mcf2l protein_coding retained_intron MGP_C3HHeJ_T0008984.1 MGP_C3HHeJ_G0007218.1 mouse_genomes_project 8 8811140 8813453 + E230013L22Rik lincRNA lincRNA MGP_C3HHeJ_T0009010.1 MGP_C3HHeJ_G0007237.1 mouse_genomes_project 8 32760702 32770052 + Gm29243 lincRNA lincRNA MGP_C3HHeJ_T0088342.1 MGP_C3HHeJ_G0033269.1 mouse_genomes_project 8 45117343 45140661 + MGP_C3HHeJ_P0088342 Ufsp2 protein_coding protein_coding MGP_C3HHeJ_T0088343.1 MGP_C3HHeJ_G0033269.1 mouse_genomes_project 8 45117349 45140560 + Ufsp2 protein_coding retained_intron MGP_C3HHeJ_T0088344.1 MGP_C3HHeJ_G0033269.1 mouse_genomes_project 8 45117359 45124002 + Ufsp2 protein_coding retained_intron MGP_C3HHeJ_T0088345.1 MGP_C3HHeJ_G0033269.1 mouse_genomes_project 8 45117365 45128508 + Ufsp2 protein_coding processed_transcript MGP_C3HHeJ_T0088346.1 MGP_C3HHeJ_G0033269.1 mouse_genomes_project 8 45117393 45123525 + Ufsp2 protein_coding processed_transcript MGP_C3HHeJ_T0088347.1 MGP_C3HHeJ_G0033269.1 mouse_genomes_project 8 45138830 45140563 + Ufsp2 protein_coding retained_intron MGP_C3HHeJ_T0089171.1 MGP_C3HHeJ_G0033523.1 mouse_genomes_project 8 84220491 84224927 + Ptger1 protein_coding retained_intron MGP_C3HHeJ_T0089172.1 MGP_C3HHeJ_G0033523.1 mouse_genomes_project 8 84220521 84226409 + MGP_C3HHeJ_P0089172 Ptger1 protein_coding protein_coding MGP_C3HHeJ_T0100871.1 MGP_C3HHeJ_G0039065.1 mouse_genomes_project 8 3355585 3355729 - Gm24288 snoRNA snoRNA MGP_C3HHeJ_T0087929.1 MGP_C3HHeJ_G0033134.1 mouse_genomes_project 8 20087873 20142013 - MGP_C3HHeJ_P0087929 Nek5 protein_coding protein_coding MGP_C3HHeJ_T0087930.1 MGP_C3HHeJ_G0033134.1 mouse_genomes_project 8 20087888 20141994 - MGP_C3HHeJ_P0087930 Nek5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088915.1 MGP_C3HHeJ_G0033434.1 mouse_genomes_project 8 71539209 71546172 - MGP_C3HHeJ_P0088915 Abhd8 protein_coding protein_coding MGP_C3HHeJ_T0005337.1 MGP_C3HHeJ_G0004517.1 mouse_genomes_project 8 129223768 129248141 + Gm26759 antisense antisense MGP_C3HHeJ_T0009081.1 MGP_C3HHeJ_G0007290.1 mouse_genomes_project 8 95290821 95292523 + Gm15889 lincRNA lincRNA MGP_C3HHeJ_T0002295.1 MGP_C3HHeJ_G0002215.1 mouse_genomes_project 8 86056124 86056756 + TEC TEC MGP_C3HHeJ_T0002296.1 MGP_C3HHeJ_G0002215.1 mouse_genomes_project 8 86056124 86056764 + TEC TEC MGP_C3HHeJ_T0009030.1 MGP_C3HHeJ_G0007256.1 mouse_genomes_project 8 72737887 72750364 + Gm17435 lincRNA lincRNA MGP_C3HHeJ_T0100891.1 MGP_C3HHeJ_G0039085.1 mouse_genomes_project 8 42295363 42295493 + Gm22986 snoRNA snoRNA MGP_C3HHeJ_T0090427.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125640331 125657460 + MGP_C3HHeJ_P0090427 Spg7 protein_coding protein_coding MGP_C3HHeJ_T0090428.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125642651 125675500 + MGP_C3HHeJ_P0090428 Spg7 protein_coding protein_coding MGP_C3HHeJ_T0090429.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125642948 125675493 + MGP_C3HHeJ_P0090429 Spg7 protein_coding protein_coding MGP_C3HHeJ_T0090430.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125642980 125675491 + Spg7 protein_coding retained_intron MGP_C3HHeJ_T0090431.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125642999 125675503 + MGP_C3HHeJ_P0090431 Spg7 protein_coding protein_coding MGP_C3HHeJ_T0090432.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125651218 125666427 + MGP_C3HHeJ_P0090432 Spg7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090433.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125657881 125666453 + Spg7 protein_coding retained_intron MGP_C3HHeJ_T0090434.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125658253 125675493 + MGP_C3HHeJ_P0090434 Spg7 protein_coding protein_coding MGP_C3HHeJ_T0090435.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125664693 125671139 + Spg7 protein_coding retained_intron MGP_C3HHeJ_T0090436.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125664863 125669181 + Spg7 protein_coding processed_transcript MGP_C3HHeJ_T0090437.1 MGP_C3HHeJ_G0033924.1 mouse_genomes_project 8 125669140 125675493 + MGP_C3HHeJ_P0090437 Spg7 protein_coding protein_coding MGP_C3HHeJ_T0015791.1 MGP_C3HHeJ_G0013895.1 mouse_genomes_project 8 82289444 82289795 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089840.1 MGP_C3HHeJ_G0033733.1 mouse_genomes_project 8 107189809 107201636 - MGP_C3HHeJ_P0089840 Zdhhc1 protein_coding protein_coding MGP_C3HHeJ_T0088527.1 MGP_C3HHeJ_G0033323.1 mouse_genomes_project 8 61151153 61167612 + MGP_C3HHeJ_P0088527 Cbr4 protein_coding protein_coding MGP_C3HHeJ_T0088528.1 MGP_C3HHeJ_G0033323.1 mouse_genomes_project 8 61151154 61155002 + MGP_C3HHeJ_P0088528 Cbr4 protein_coding protein_coding MGP_C3HHeJ_T0088529.1 MGP_C3HHeJ_G0033323.1 mouse_genomes_project 8 61151174 61155320 + Cbr4 protein_coding retained_intron MGP_C3HHeJ_T0088530.1 MGP_C3HHeJ_G0033323.1 mouse_genomes_project 8 61151188 61167459 + Cbr4 protein_coding retained_intron MGP_C3HHeJ_T0088531.1 MGP_C3HHeJ_G0033323.1 mouse_genomes_project 8 61154824 61167459 + Cbr4 protein_coding retained_intron MGP_C3HHeJ_T0088532.1 MGP_C3HHeJ_G0033323.1 mouse_genomes_project 8 61158918 61167519 + Cbr4 protein_coding retained_intron MGP_C3HHeJ_T0099628.1 MGP_C3HHeJ_G0037822.1 mouse_genomes_project 8 26051464 26051567 - Gm24202 snRNA snRNA MGP_C3HHeJ_T0005316.1 MGP_C3HHeJ_G0004497.1 mouse_genomes_project 8 112749161 112754686 + Gm15894 antisense antisense MGP_C3HHeJ_T0090523.1 MGP_C3HHeJ_G0033949.1 mouse_genomes_project 8 126430443 126483603 - MGP_C3HHeJ_P0090523 Nup133 protein_coding protein_coding MGP_C3HHeJ_T0015762.1 MGP_C3HHeJ_G0013866.1 mouse_genomes_project 8 32872009 32874656 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088429.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47494519 47955581 - MGP_C3HHeJ_P0088429 Tenm3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088430.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47496535 47640590 - MGP_C3HHeJ_P0088430 Tenm3 protein_coding protein_coding MGP_C3HHeJ_T0088431.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47496535 48130535 - MGP_C3HHeJ_P0088431 Tenm3 protein_coding protein_coding MGP_C3HHeJ_T0088432.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47496558 47955581 - MGP_C3HHeJ_P0088432 Tenm3 protein_coding protein_coding MGP_C3HHeJ_T0088433.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47547487 47571664 - Tenm3 protein_coding processed_transcript MGP_C3HHeJ_T0088434.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47606493 47834351 - MGP_C3HHeJ_P0088434 Tenm3 protein_coding protein_coding MGP_C3HHeJ_T0088435.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47670400 47834697 - MGP_C3HHeJ_P0088435 Tenm3 protein_coding protein_coding MGP_C3HHeJ_T0088436.1 MGP_C3HHeJ_G0033294.1 mouse_genomes_project 8 47670400 47834504 - MGP_C3HHeJ_P0088436 Tenm3 protein_coding protein_coding MGP_C3HHeJ_T0009020.1 MGP_C3HHeJ_G0007247.1 mouse_genomes_project 8 57086450 57108274 + 2500002B13Rik lincRNA lincRNA MGP_C3HHeJ_T0015811.1 MGP_C3HHeJ_G0013915.1 mouse_genomes_project 8 119449974 119450378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088033.1 MGP_C3HHeJ_G0033166.1 mouse_genomes_project 8 23075069 23142748 - MGP_C3HHeJ_P0088033 Adam9 protein_coding protein_coding MGP_C3HHeJ_T0088986.1 MGP_C3HHeJ_G0033454.1 mouse_genomes_project 8 72085961 72093653 + MGP_C3HHeJ_P0088986 Zfp882 protein_coding protein_coding MGP_C3HHeJ_T0088987.1 MGP_C3HHeJ_G0033454.1 mouse_genomes_project 8 72086010 72090920 + MGP_C3HHeJ_P0088987 Zfp882 protein_coding protein_coding MGP_C3HHeJ_T0088988.1 MGP_C3HHeJ_G0033454.1 mouse_genomes_project 8 72086258 72090924 + MGP_C3HHeJ_P0088988 Zfp882 protein_coding protein_coding MGP_C3HHeJ_T0018268.1 MGP_C3HHeJ_G0015486.1 mouse_genomes_project 8 111855264 111864508 + Gm16349 processed_transcript processed_transcript MGP_C3HHeJ_T0088498.1 MGP_C3HHeJ_G0033316.1 mouse_genomes_project 8 60079046 60150632 - MGP_C3HHeJ_P0088498 Gm10283 protein_coding protein_coding MGP_C3HHeJ_T0089253.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 84969166 85107732 + Cacna1a protein_coding retained_intron MGP_C3HHeJ_T0089254.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 84997629 85229663 + MGP_C3HHeJ_P0089254 Cacna1a protein_coding protein_coding MGP_C3HHeJ_T0089255.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 84997642 85229479 + MGP_C3HHeJ_P0089255 Cacna1a protein_coding protein_coding MGP_C3HHeJ_T0089256.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85135715 85142640 + Cacna1a protein_coding processed_transcript MGP_C3HHeJ_T0089257.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85160223 85168848 + Cacna1a protein_coding retained_intron MGP_C3HHeJ_T0089258.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85189620 85200062 + Cacna1a protein_coding retained_intron MGP_C3HHeJ_T0089259.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85189633 85201024 + Cacna1a protein_coding retained_intron MGP_C3HHeJ_T0089260.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85189659 85222265 + Cacna1a protein_coding retained_intron MGP_C3HHeJ_T0089261.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85190162 85205845 + Cacna1a protein_coding processed_transcript MGP_C3HHeJ_T0089262.1 MGP_C3HHeJ_G0033549.1 mouse_genomes_project 8 85202943 85229666 + MGP_C3HHeJ_P0089262 Cacna1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0089305.1 MGP_C3HHeJ_G0033557.1 mouse_genomes_project 8 85437935 85443175 + MGP_C3HHeJ_P0089305 Gadd45gip1 protein_coding protein_coding MGP_C3HHeJ_T0088500.1 MGP_C3HHeJ_G0033318.1 mouse_genomes_project 8 60274759 60318223 + MGP_C3HHeJ_P0088500 Mfap3l protein_coding protein_coding MGP_C3HHeJ_T0088501.1 MGP_C3HHeJ_G0033318.1 mouse_genomes_project 8 60274792 60320019 + MGP_C3HHeJ_P0088501 Mfap3l protein_coding protein_coding MGP_C3HHeJ_T0088502.1 MGP_C3HHeJ_G0033318.1 mouse_genomes_project 8 60298435 60315755 + MGP_C3HHeJ_P0088502 Mfap3l protein_coding protein_coding MGP_C3HHeJ_T0088503.1 MGP_C3HHeJ_G0033318.1 mouse_genomes_project 8 60298871 60315651 + MGP_C3HHeJ_P0088503 Mfap3l protein_coding protein_coding MGP_C3HHeJ_T0100924.1 MGP_C3HHeJ_G0039118.1 mouse_genomes_project 8 107730131 107730262 - Gm22972 snoRNA snoRNA MGP_C3HHeJ_T0087767.1 MGP_C3HHeJ_G0033064.1 mouse_genomes_project 8 10483518 10496055 + MGP_C3HHeJ_P0087767 Proz protein_coding protein_coding MGP_C3HHeJ_T0089096.1 MGP_C3HHeJ_G0033493.1 mouse_genomes_project 8 79186352 79202968 - MGP_C3HHeJ_P0089096 Lsm6 protein_coding protein_coding MGP_C3HHeJ_T0089097.1 MGP_C3HHeJ_G0033493.1 mouse_genomes_project 8 79187931 79202968 - MGP_C3HHeJ_P0089097 Lsm6 protein_coding protein_coding MGP_C3HHeJ_T0089098.1 MGP_C3HHeJ_G0033493.1 mouse_genomes_project 8 79189517 79191691 - Lsm6 protein_coding retained_intron MGP_C3HHeJ_T0089099.1 MGP_C3HHeJ_G0033493.1 mouse_genomes_project 8 79189538 79194695 - Lsm6 protein_coding retained_intron MGP_C3HHeJ_T0089756.1 MGP_C3HHeJ_G0033700.1 mouse_genomes_project 8 106192408 106196266 + MGP_C3HHeJ_P0089756 Pdp2 protein_coding protein_coding MGP_C3HHeJ_T0089757.1 MGP_C3HHeJ_G0033701.1 mouse_genomes_project 8 106216394 106226650 - MGP_C3HHeJ_P0089757 Cdh16 protein_coding protein_coding MGP_C3HHeJ_T0089148.1 MGP_C3HHeJ_G0033512.1 mouse_genomes_project 8 83678334 83791787 + MGP_C3HHeJ_P0089148 Tbc1d9 protein_coding protein_coding MGP_C3HHeJ_T0089149.1 MGP_C3HHeJ_G0033512.1 mouse_genomes_project 8 83678842 83792300 + MGP_C3HHeJ_P0089149 Tbc1d9 protein_coding protein_coding MGP_C3HHeJ_T0089150.1 MGP_C3HHeJ_G0033512.1 mouse_genomes_project 8 83778658 83790314 + Tbc1d9 protein_coding retained_intron MGP_C3HHeJ_T0087692.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8830326 8846121 + MGP_C3HHeJ_P0087692 Carkd protein_coding protein_coding MGP_C3HHeJ_T0087693.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8830387 8847794 + MGP_C3HHeJ_P0087693 Carkd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087694.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8830388 8846121 + MGP_C3HHeJ_P0087694 Carkd protein_coding protein_coding MGP_C3HHeJ_T0087695.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8830413 8839881 + Carkd protein_coding retained_intron MGP_C3HHeJ_T0087696.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8830453 8843070 + Carkd protein_coding retained_intron MGP_C3HHeJ_T0087697.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8830473 8845879 + MGP_C3HHeJ_P0087697 Carkd protein_coding protein_coding MGP_C3HHeJ_T0087698.1 MGP_C3HHeJ_G0033048.1 mouse_genomes_project 8 8842795 8846101 + Carkd protein_coding retained_intron MGP_C3HHeJ_T0089095.1 MGP_C3HHeJ_G0033492.1 mouse_genomes_project 8 78868167 79104349 + MGP_C3HHeJ_P0089095 Slc10a7 protein_coding protein_coding MGP_C3HHeJ_T0005263.1 MGP_C3HHeJ_G0004454.1 mouse_genomes_project 8 11300612 11302041 + antisense antisense MGP_C3HHeJ_T0088851.1 MGP_C3HHeJ_G0033413.1 mouse_genomes_project 8 70764017 70766291 - MGP_C3HHeJ_P0088851 Mpv17l2 protein_coding protein_coding MGP_C3HHeJ_T0089533.1 MGP_C3HHeJ_G0033620.1 mouse_genomes_project 8 93522859 93529469 + MGP_C3HHeJ_P0089533 Irx6 protein_coding protein_coding MGP_C3HHeJ_T0089534.1 MGP_C3HHeJ_G0033620.1 mouse_genomes_project 8 93523338 93529469 + MGP_C3HHeJ_P0089534 Irx6 protein_coding protein_coding MGP_C3HHeJ_T0005296.1 MGP_C3HHeJ_G0004481.1 mouse_genomes_project 8 68938718 68957029 + Gm15716 antisense antisense MGP_C3HHeJ_T0089349.1 MGP_C3HHeJ_G0033567.1 mouse_genomes_project 8 85561530 85573046 + MGP_C3HHeJ_P0089349 Rtbdn protein_coding protein_coding MGP_C3HHeJ_T0089350.1 MGP_C3HHeJ_G0033567.1 mouse_genomes_project 8 85561530 85573046 + MGP_C3HHeJ_P0089350 Rtbdn protein_coding protein_coding MGP_C3HHeJ_T0089351.1 MGP_C3HHeJ_G0033567.1 mouse_genomes_project 8 85565477 85573046 + MGP_C3HHeJ_P0089351 Rtbdn protein_coding protein_coding MGP_C3HHeJ_T0089352.1 MGP_C3HHeJ_G0033567.1 mouse_genomes_project 8 85566798 85572954 + MGP_C3HHeJ_P0089352 Rtbdn protein_coding protein_coding MGP_C3HHeJ_T0015752.1 MGP_C3HHeJ_G0013856.1 mouse_genomes_project 8 17320568 17321159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009024.1 MGP_C3HHeJ_G0007251.1 mouse_genomes_project 8 67965403 67992399 - lincRNA lincRNA MGP_C3HHeJ_T0009025.1 MGP_C3HHeJ_G0007251.1 mouse_genomes_project 8 67991436 67992613 - lincRNA lincRNA MGP_C3HHeJ_T0087675.1 MGP_C3HHeJ_G0033037.1 mouse_genomes_project 8 5885851 5888779 + MGP_C3HHeJ_P0087675 protein_coding protein_coding MGP_C3HHeJ_T0089021.1 MGP_C3HHeJ_G0033465.1 mouse_genomes_project 8 72574154 72658084 - MGP_C3HHeJ_P0089021 Eps15l1 protein_coding protein_coding MGP_C3HHeJ_T0100875.1 MGP_C3HHeJ_G0039069.1 mouse_genomes_project 8 12750234 12750367 - Gm24231 snoRNA snoRNA MGP_C3HHeJ_T0010913.1 MGP_C3HHeJ_G0009046.1 mouse_genomes_project 8 104097759 104097854 - Gm26301 miRNA miRNA MGP_C3HHeJ_T0090349.1 MGP_C3HHeJ_G0033903.1 mouse_genomes_project 8 124451354 124480441 - MGP_C3HHeJ_P0090349 Car5a protein_coding protein_coding MGP_C3HHeJ_T0090350.1 MGP_C3HHeJ_G0033903.1 mouse_genomes_project 8 124452923 124463100 - Car5a protein_coding processed_transcript MGP_C3HHeJ_T0087908.1 MGP_C3HHeJ_G0033118.1 mouse_genomes_project 8 19657305 19658978 - MGP_C3HHeJ_P0087908 protein_coding protein_coding MGP_C3HHeJ_T0100878.1 MGP_C3HHeJ_G0039072.1 mouse_genomes_project 8 16062086 16062217 - Gm24469 snoRNA snoRNA MGP_C3HHeJ_T0089226.1 MGP_C3HHeJ_G0033538.1 mouse_genomes_project 8 84626268 84628316 - MGP_C3HHeJ_P0089226 protein_coding protein_coding MGP_C3HHeJ_T0089414.1 MGP_C3HHeJ_G0033587.1 mouse_genomes_project 8 85944807 85986880 - MGP_C3HHeJ_P0089414 Mylk3 protein_coding protein_coding MGP_C3HHeJ_T0089415.1 MGP_C3HHeJ_G0033587.1 mouse_genomes_project 8 85944951 86003097 - MGP_C3HHeJ_P0089415 Mylk3 protein_coding protein_coding MGP_C3HHeJ_T0089416.1 MGP_C3HHeJ_G0033587.1 mouse_genomes_project 8 85947558 85986903 - MGP_C3HHeJ_P0089416 Mylk3 protein_coding protein_coding MGP_C3HHeJ_T0089417.1 MGP_C3HHeJ_G0033587.1 mouse_genomes_project 8 85979892 86008457 - MGP_C3HHeJ_P0089417 Mylk3 protein_coding protein_coding MGP_C3HHeJ_T0089418.1 MGP_C3HHeJ_G0033587.1 mouse_genomes_project 8 85981067 86003153 - Mylk3 protein_coding retained_intron MGP_C3HHeJ_T0087884.1 MGP_C3HHeJ_G0033100.1 mouse_genomes_project 8 16499082 16517190 - Xkr5 protein_coding processed_transcript MGP_C3HHeJ_T0087885.1 MGP_C3HHeJ_G0033100.1 mouse_genomes_project 8 16499082 16517294 - MGP_C3HHeJ_P0087885 Xkr5 protein_coding protein_coding MGP_C3HHeJ_T0087886.1 MGP_C3HHeJ_G0033100.1 mouse_genomes_project 8 16499082 16517292 - MGP_C3HHeJ_P0087886 Xkr5 protein_coding protein_coding MGP_C3HHeJ_T0087887.1 MGP_C3HHeJ_G0033100.1 mouse_genomes_project 8 16499085 16517235 - MGP_C3HHeJ_P0087887 Xkr5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087888.1 MGP_C3HHeJ_G0033100.1 mouse_genomes_project 8 16499441 16517256 - MGP_C3HHeJ_P0087888 Xkr5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090384.1 MGP_C3HHeJ_G0033910.1 mouse_genomes_project 8 124975214 124985041 - MGP_C3HHeJ_P0090384 Mvd protein_coding protein_coding MGP_C3HHeJ_T0010870.1 MGP_C3HHeJ_G0009003.1 mouse_genomes_project 8 24410092 24410173 + Gm44299 miRNA miRNA MGP_C3HHeJ_T0099653.1 MGP_C3HHeJ_G0037847.1 mouse_genomes_project 8 87304895 87305003 - Gm22305 snRNA snRNA MGP_C3HHeJ_T0088020.1 MGP_C3HHeJ_G0033164.1 mouse_genomes_project 8 22850941 22926998 - MGP_C3HHeJ_P0088020 Adam5 protein_coding protein_coding MGP_C3HHeJ_T0088021.1 MGP_C3HHeJ_G0033164.1 mouse_genomes_project 8 22850941 22933600 - MGP_C3HHeJ_P0088021 Adam5 protein_coding protein_coding MGP_C3HHeJ_T0088022.1 MGP_C3HHeJ_G0033164.1 mouse_genomes_project 8 22851050 22933526 - Adam5 protein_coding processed_transcript MGP_C3HHeJ_T0088023.1 MGP_C3HHeJ_G0033164.1 mouse_genomes_project 8 22856681 22933910 - MGP_C3HHeJ_P0088023 Adam5 protein_coding protein_coding MGP_C3HHeJ_T0087677.1 MGP_C3HHeJ_G0033039.1 mouse_genomes_project 8 6444203 7036440 - MGP_C3HHeJ_P0087677 Fam155a protein_coding protein_coding MGP_C3HHeJ_T0087574.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588198 602000 + MGP_C3HHeJ_P0087574 Stxbp2 protein_coding protein_coding MGP_C3HHeJ_T0087575.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588395 592756 + Stxbp2 protein_coding processed_transcript MGP_C3HHeJ_T0087576.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588396 591168 + Stxbp2 protein_coding processed_transcript MGP_C3HHeJ_T0087577.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588396 592901 + Stxbp2 protein_coding processed_transcript MGP_C3HHeJ_T0087578.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588400 591979 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087579.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588408 593004 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087580.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 588413 601151 + MGP_C3HHeJ_P0087580 Stxbp2 protein_coding protein_coding MGP_C3HHeJ_T0087581.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 590158 591310 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087582.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 592677 592981 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087583.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 594427 599322 + Stxbp2 protein_coding processed_transcript MGP_C3HHeJ_T0087584.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 597912 601150 + Stxbp2 protein_coding processed_transcript MGP_C3HHeJ_T0087585.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 599024 600255 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087586.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 599081 600340 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087587.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 599154 601144 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0087588.1 MGP_C3HHeJ_G0033009.1 mouse_genomes_project 8 599929 601151 + Stxbp2 protein_coding retained_intron MGP_C3HHeJ_T0100904.1 MGP_C3HHeJ_G0039098.1 mouse_genomes_project 8 66777684 66777813 - Gm25275 snoRNA snoRNA MGP_C3HHeJ_T0090281.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123135823 123150296 - MGP_C3HHeJ_P0090281 Emc8 protein_coding protein_coding MGP_C3HHeJ_T0090282.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123137887 123150330 - Emc8 protein_coding retained_intron MGP_C3HHeJ_T0090283.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123139760 123150891 - MGP_C3HHeJ_P0090283 Emc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090284.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123139933 123150081 - MGP_C3HHeJ_P0090284 Emc8 protein_coding protein_coding MGP_C3HHeJ_T0090285.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123139959 123150154 - MGP_C3HHeJ_P0090285 Emc8 protein_coding protein_coding MGP_C3HHeJ_T0090286.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123141883 123150321 - MGP_C3HHeJ_P0090286 Emc8 protein_coding protein_coding MGP_C3HHeJ_T0090287.1 MGP_C3HHeJ_G0033889.1 mouse_genomes_project 8 123142556 123150431 - Emc8 protein_coding retained_intron MGP_C3HHeJ_T0087948.1 MGP_C3HHeJ_G0033144.1 mouse_genomes_project 8 20612747 20632236 - MGP_C3HHeJ_P0087948 Vdac3-ps1 protein_coding protein_coding MGP_C3HHeJ_T0090053.1 MGP_C3HHeJ_G0033814.1 mouse_genomes_project 8 112883896 112905975 - MGP_C3HHeJ_P0090053 Fuk protein_coding protein_coding MGP_C3HHeJ_T0100927.1 MGP_C3HHeJ_G0039121.1 mouse_genomes_project 8 112842416 112842492 - Gm22193 snoRNA snoRNA MGP_C3HHeJ_T0098193.1 MGP_C3HHeJ_G0036405.1 mouse_genomes_project 8 54430739 54430858 + n-R5s98 rRNA rRNA MGP_C3HHeJ_T0100913.1 MGP_C3HHeJ_G0039107.1 mouse_genomes_project 8 84961238 84961371 - Gm23626 snoRNA snoRNA MGP_C3HHeJ_T0090034.1 MGP_C3HHeJ_G0033811.1 mouse_genomes_project 8 112736006 112736876 - Il34 protein_coding processed_transcript MGP_C3HHeJ_T0090035.1 MGP_C3HHeJ_G0033811.1 mouse_genomes_project 8 112736017 112805906 - MGP_C3HHeJ_P0090035 Il34 protein_coding protein_coding MGP_C3HHeJ_T0090036.1 MGP_C3HHeJ_G0033811.1 mouse_genomes_project 8 112736456 112749921 - MGP_C3HHeJ_P0090036 Il34 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090037.1 MGP_C3HHeJ_G0033811.1 mouse_genomes_project 8 112749405 112788963 - Il34 protein_coding processed_transcript MGP_C3HHeJ_T0090038.1 MGP_C3HHeJ_G0033811.1 mouse_genomes_project 8 112749694 112805958 - Il34 protein_coding processed_transcript MGP_C3HHeJ_T0005252.1 MGP_C3HHeJ_G0004447.1 mouse_genomes_project 8 8509336 8527770 + Gm15418 antisense antisense MGP_C3HHeJ_T0010853.1 MGP_C3HHeJ_G0008986.1 mouse_genomes_project 8 2783704 2783773 + Gm22565 miRNA miRNA MGP_C3HHeJ_T0089498.1 MGP_C3HHeJ_G0033610.1 mouse_genomes_project 8 89752118 89769033 - MGP_C3HHeJ_P0089498 Sall1 protein_coding protein_coding MGP_C3HHeJ_T0089532.1 MGP_C3HHeJ_G0033619.1 mouse_genomes_project 8 93193928 93197589 + MGP_C3HHeJ_P0089532 Irx5 protein_coding protein_coding MGP_C3HHeJ_T0088300.1 MGP_C3HHeJ_G0033259.1 mouse_genomes_project 8 44152074 44171260 + MGP_C3HHeJ_P0088300 Mtnr1a protein_coding protein_coding MGP_C3HHeJ_T0088301.1 MGP_C3HHeJ_G0033259.1 mouse_genomes_project 8 44152311 44170260 + MGP_C3HHeJ_P0088301 Mtnr1a protein_coding protein_coding MGP_C3HHeJ_T0100894.1 MGP_C3HHeJ_G0039088.1 mouse_genomes_project 8 46658468 46658602 + Gm22857 snoRNA snoRNA MGP_C3HHeJ_T0088098.1 MGP_C3HHeJ_G0033185.1 mouse_genomes_project 8 24206623 24304440 - MGP_C3HHeJ_P0088098 Hook3 protein_coding protein_coding MGP_C3HHeJ_T0088099.1 MGP_C3HHeJ_G0033185.1 mouse_genomes_project 8 24223291 24255945 - MGP_C3HHeJ_P0088099 Hook3 protein_coding protein_coding MGP_C3HHeJ_T0088100.1 MGP_C3HHeJ_G0033185.1 mouse_genomes_project 8 24223300 24229918 - Hook3 protein_coding retained_intron MGP_C3HHeJ_T0009113.1 MGP_C3HHeJ_G0007314.1 mouse_genomes_project 8 124193800 124194264 + Gm27030 lincRNA lincRNA MGP_C3HHeJ_T0087998.1 MGP_C3HHeJ_G0033158.1 mouse_genomes_project 8 22272187 22283928 + MGP_C3HHeJ_P0087998 protein_coding protein_coding MGP_C3HHeJ_T0088395.1 MGP_C3HHeJ_G0033281.1 mouse_genomes_project 8 46168344 46214074 + Enpp6 protein_coding retained_intron MGP_C3HHeJ_T0088396.1 MGP_C3HHeJ_G0033281.1 mouse_genomes_project 8 46168346 46277078 + Enpp6 protein_coding retained_intron MGP_C3HHeJ_T0088397.1 MGP_C3HHeJ_G0033281.1 mouse_genomes_project 8 46168346 46277078 + MGP_C3HHeJ_P0088397 Enpp6 protein_coding protein_coding MGP_C3HHeJ_T0088398.1 MGP_C3HHeJ_G0033281.1 mouse_genomes_project 8 46168373 46270458 + MGP_C3HHeJ_P0088398 Enpp6 protein_coding protein_coding MGP_C3HHeJ_T0088399.1 MGP_C3HHeJ_G0033281.1 mouse_genomes_project 8 46256797 46271140 + MGP_C3HHeJ_P0088399 Enpp6 protein_coding protein_coding MGP_C3HHeJ_T0010878.1 MGP_C3HHeJ_G0009011.1 mouse_genomes_project 8 64890870 64890954 - Gm23419 miRNA miRNA MGP_C3HHeJ_T0087799.1 MGP_C3HHeJ_G0033074.1 mouse_genomes_project 8 10860398 10877735 + MGP_C3HHeJ_P0087799 Grk1 protein_coding protein_coding MGP_C3HHeJ_T0087893.1 MGP_C3HHeJ_G0033105.1 mouse_genomes_project 8 16719411 16722201 + MGP_C3HHeJ_P0087893 Defb34 protein_coding protein_coding MGP_C3HHeJ_T0090177.1 MGP_C3HHeJ_G0033855.1 mouse_genomes_project 8 119308701 119404596 - MGP_C3HHeJ_P0090177 Pkd1l2 protein_coding protein_coding MGP_C3HHeJ_T0090178.1 MGP_C3HHeJ_G0033855.1 mouse_genomes_project 8 119308701 119404596 - MGP_C3HHeJ_P0090178 Pkd1l2 protein_coding protein_coding MGP_C3HHeJ_T0090179.1 MGP_C3HHeJ_G0033855.1 mouse_genomes_project 8 119317136 119332984 - Pkd1l2 protein_coding retained_intron MGP_C3HHeJ_T0090180.1 MGP_C3HHeJ_G0033855.1 mouse_genomes_project 8 119332438 119340756 - Pkd1l2 protein_coding retained_intron MGP_C3HHeJ_T0089801.1 MGP_C3HHeJ_G0033719.1 mouse_genomes_project 8 106977632 106983514 + MGP_C3HHeJ_P0089801 Hsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089802.1 MGP_C3HHeJ_G0033719.1 mouse_genomes_project 8 106977660 106983671 + MGP_C3HHeJ_P0089802 Hsf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089803.1 MGP_C3HHeJ_G0033719.1 mouse_genomes_project 8 106977705 106983486 + MGP_C3HHeJ_P0089803 Hsf4 protein_coding protein_coding MGP_C3HHeJ_T0089804.1 MGP_C3HHeJ_G0033719.1 mouse_genomes_project 8 106977705 106983673 + MGP_C3HHeJ_P0089804 Hsf4 protein_coding protein_coding MGP_C3HHeJ_T0089805.1 MGP_C3HHeJ_G0033719.1 mouse_genomes_project 8 106977705 106983486 + MGP_C3HHeJ_P0089805 Hsf4 protein_coding protein_coding MGP_C3HHeJ_T0089587.1 MGP_C3HHeJ_G0033638.1 mouse_genomes_project 8 94968828 95001326 - MGP_C3HHeJ_P0089587 Bbs2 protein_coding protein_coding MGP_C3HHeJ_T0089588.1 MGP_C3HHeJ_G0033638.1 mouse_genomes_project 8 94969018 94971088 - Bbs2 protein_coding processed_transcript MGP_C3HHeJ_T0089589.1 MGP_C3HHeJ_G0033638.1 mouse_genomes_project 8 94976014 94981345 - Bbs2 protein_coding processed_transcript MGP_C3HHeJ_T0090039.1 MGP_C3HHeJ_G0033812.1 mouse_genomes_project 8 112810525 112847765 - MGP_C3HHeJ_P0090039 Sf3b3 protein_coding protein_coding MGP_C3HHeJ_T0010932.1 MGP_C3HHeJ_G0009065.1 mouse_genomes_project 8 122902855 122902946 - Gm22715 miRNA miRNA MGP_C3HHeJ_T0087649.1 MGP_C3HHeJ_G0033028.1 mouse_genomes_project 8 1265380 1307910 - MGP_C3HHeJ_P0087649 Elavl1 protein_coding protein_coding MGP_C3HHeJ_T0089015.1 MGP_C3HHeJ_G0033463.1 mouse_genomes_project 8 72462583 72479853 + MGP_C3HHeJ_P0089015 Ap1m1 protein_coding protein_coding MGP_C3HHeJ_T0089016.1 MGP_C3HHeJ_G0033463.1 mouse_genomes_project 8 72462675 72472513 + MGP_C3HHeJ_P0089016 Ap1m1 protein_coding protein_coding MGP_C3HHeJ_T0089017.1 MGP_C3HHeJ_G0033463.1 mouse_genomes_project 8 72462888 72474449 + MGP_C3HHeJ_P0089017 Ap1m1 protein_coding protein_coding MGP_C3HHeJ_T0089018.1 MGP_C3HHeJ_G0033463.1 mouse_genomes_project 8 72475488 72479042 + Ap1m1 protein_coding retained_intron MGP_C3HHeJ_T0089019.1 MGP_C3HHeJ_G0033463.1 mouse_genomes_project 8 72475568 72479381 + Ap1m1 protein_coding retained_intron MGP_C3HHeJ_T0009043.1 MGP_C3HHeJ_G0007267.1 mouse_genomes_project 8 87537048 87537927 + 2010110E17Rik lincRNA lincRNA MGP_C3HHeJ_T0090020.1 MGP_C3HHeJ_G0033804.1 mouse_genomes_project 8 112023780 112049356 - MGP_C3HHeJ_P0090020 Gm17720 protein_coding protein_coding MGP_C3HHeJ_T0089862.1 MGP_C3HHeJ_G0033744.1 mouse_genomes_project 8 107442467 107489617 - MGP_C3HHeJ_P0089862 Gfod2 protein_coding protein_coding MGP_C3HHeJ_T0089863.1 MGP_C3HHeJ_G0033744.1 mouse_genomes_project 8 107446030 107489583 - MGP_C3HHeJ_P0089863 Gfod2 protein_coding protein_coding MGP_C3HHeJ_T0089864.1 MGP_C3HHeJ_G0033744.1 mouse_genomes_project 8 107457466 107489549 - Gfod2 protein_coding processed_transcript MGP_C3HHeJ_T0089067.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77199450 77208414 + MGP_C3HHeJ_P0089067 Nr3c2 protein_coding protein_coding MGP_C3HHeJ_T0089068.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77199777 77554674 + MGP_C3HHeJ_P0089068 Nr3c2 protein_coding protein_coding MGP_C3HHeJ_T0089069.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77202292 77552658 + MGP_C3HHeJ_P0089069 Nr3c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089070.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77202292 77554669 + MGP_C3HHeJ_P0089070 Nr3c2 protein_coding protein_coding MGP_C3HHeJ_T0089071.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77202351 77208657 + MGP_C3HHeJ_P0089071 Nr3c2 protein_coding protein_coding MGP_C3HHeJ_T0089072.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77202480 77553325 + MGP_C3HHeJ_P0089072 Nr3c2 protein_coding protein_coding MGP_C3HHeJ_T0089073.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77208272 77552192 + MGP_C3HHeJ_P0089073 Nr3c2 protein_coding protein_coding MGP_C3HHeJ_T0089074.1 MGP_C3HHeJ_G0033484.1 mouse_genomes_project 8 77435094 77494457 + Nr3c2 protein_coding processed_transcript MGP_C3HHeJ_T0097930.1 MGP_C3HHeJ_G0036142.1 mouse_genomes_project 8 23765358 23766332 + pseudogene pseudogene MGP_C3HHeJ_T0087901.1 MGP_C3HHeJ_G0033112.1 mouse_genomes_project 8 16879279 16881224 + MGP_C3HHeJ_P0087901 Defb3 protein_coding protein_coding MGP_C3HHeJ_T0005250.1 MGP_C3HHeJ_G0004445.1 mouse_genomes_project 8 630706 631855 - antisense antisense MGP_C3HHeJ_T0100907.1 MGP_C3HHeJ_G0039101.1 mouse_genomes_project 8 70075026 70075152 - Gm25906 snoRNA snoRNA MGP_C3HHeJ_T0009053.1 MGP_C3HHeJ_G0007276.1 mouse_genomes_project 8 88112693 88116008 + Gm19872 lincRNA lincRNA MGP_C3HHeJ_T0100882.1 MGP_C3HHeJ_G0039076.1 mouse_genomes_project 8 21366661 21366793 - Gm24335 snoRNA snoRNA MGP_C3HHeJ_T0087768.1 MGP_C3HHeJ_G0033065.1 mouse_genomes_project 8 10498237 10527782 - MGP_C3HHeJ_P0087768 Pcid2 protein_coding protein_coding MGP_C3HHeJ_T0087769.1 MGP_C3HHeJ_G0033065.1 mouse_genomes_project 8 10498237 10527782 - MGP_C3HHeJ_P0087769 Pcid2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087770.1 MGP_C3HHeJ_G0033065.1 mouse_genomes_project 8 10500772 10508197 - Pcid2 protein_coding processed_transcript MGP_C3HHeJ_T0087771.1 MGP_C3HHeJ_G0033065.1 mouse_genomes_project 8 10500944 10527154 - Pcid2 protein_coding processed_transcript MGP_C3HHeJ_T0087772.1 MGP_C3HHeJ_G0033065.1 mouse_genomes_project 8 10506838 10520931 - MGP_C3HHeJ_P0087772 Pcid2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087773.1 MGP_C3HHeJ_G0033065.1 mouse_genomes_project 8 10506887 10527144 - MGP_C3HHeJ_P0087773 Pcid2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089163.1 MGP_C3HHeJ_G0033518.1 mouse_genomes_project 8 84080901 84081997 + MGP_C3HHeJ_P0089163 Olfr370 protein_coding protein_coding MGP_C3HHeJ_T0010856.1 MGP_C3HHeJ_G0008989.1 mouse_genomes_project 8 8983189 8983232 - Mir7238 miRNA miRNA MGP_C3HHeJ_T0089844.1 MGP_C3HHeJ_G0033736.1 mouse_genomes_project 8 107286782 107362988 - MGP_C3HHeJ_P0089844 Agrp protein_coding protein_coding MGP_C3HHeJ_T0089845.1 MGP_C3HHeJ_G0033736.1 mouse_genomes_project 8 107286782 107288383 - MGP_C3HHeJ_P0089845 Agrp protein_coding protein_coding MGP_C3HHeJ_T0089846.1 MGP_C3HHeJ_G0033736.1 mouse_genomes_project 8 107286882 107304418 - MGP_C3HHeJ_P0089846 Agrp protein_coding protein_coding MGP_C3HHeJ_T0088862.1 MGP_C3HHeJ_G0033419.1 mouse_genomes_project 8 70850505 70866810 - MGP_C3HHeJ_P0088862 Kcnn1 protein_coding protein_coding MGP_C3HHeJ_T0088863.1 MGP_C3HHeJ_G0033419.1 mouse_genomes_project 8 70850505 70866810 - MGP_C3HHeJ_P0088863 Kcnn1 protein_coding protein_coding MGP_C3HHeJ_T0088864.1 MGP_C3HHeJ_G0033419.1 mouse_genomes_project 8 70851628 70866767 - MGP_C3HHeJ_P0088864 Kcnn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090389.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125017620 125024644 + MGP_C3HHeJ_P0090389 Ctu2 protein_coding protein_coding MGP_C3HHeJ_T0090390.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125017686 125025690 + MGP_C3HHeJ_P0090390 Ctu2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090391.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125017690 125023293 + Ctu2 protein_coding retained_intron MGP_C3HHeJ_T0090392.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125017690 125020139 + MGP_C3HHeJ_P0090392 Ctu2 protein_coding protein_coding MGP_C3HHeJ_T0090393.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125017697 125021238 + MGP_C3HHeJ_P0090393 Ctu2 protein_coding protein_coding MGP_C3HHeJ_T0090394.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125017720 125020843 + Ctu2 protein_coding retained_intron MGP_C3HHeJ_T0090395.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125018618 125020171 + Ctu2 protein_coding retained_intron MGP_C3HHeJ_T0090396.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125022473 125023292 + Ctu2 protein_coding retained_intron MGP_C3HHeJ_T0090397.1 MGP_C3HHeJ_G0033913.1 mouse_genomes_project 8 125022508 125023296 + MGP_C3HHeJ_P0090397 Ctu2 protein_coding protein_coding MGP_C3HHeJ_T0009104.1 MGP_C3HHeJ_G0007308.1 mouse_genomes_project 8 123564310 123595191 - Fendrr lincRNA lincRNA MGP_C3HHeJ_T0009105.1 MGP_C3HHeJ_G0007308.1 mouse_genomes_project 8 123568231 123569842 - Fendrr lincRNA lincRNA MGP_C3HHeJ_T0009106.1 MGP_C3HHeJ_G0007308.1 mouse_genomes_project 8 123568547 123595269 - Fendrr lincRNA lincRNA MGP_C3HHeJ_T0099663.1 MGP_C3HHeJ_G0037857.1 mouse_genomes_project 8 114168719 114168826 + Gm22827 snRNA snRNA MGP_C3HHeJ_T0088651.1 MGP_C3HHeJ_G0033359.1 mouse_genomes_project 8 69553702 69567978 - MGP_C3HHeJ_P0088651 Zfp868 protein_coding protein_coding MGP_C3HHeJ_T0088652.1 MGP_C3HHeJ_G0033359.1 mouse_genomes_project 8 69554259 69562213 - MGP_C3HHeJ_P0088652 Zfp868 protein_coding protein_coding MGP_C3HHeJ_T0088653.1 MGP_C3HHeJ_G0033359.1 mouse_genomes_project 8 69555265 69556902 - Zfp868 protein_coding retained_intron MGP_C3HHeJ_T0088654.1 MGP_C3HHeJ_G0033359.1 mouse_genomes_project 8 69561730 69567975 - Zfp868 protein_coding retained_intron MGP_C3HHeJ_T0090288.1 MGP_C3HHeJ_G0033890.1 mouse_genomes_project 8 123150576 123156517 + MGP_C3HHeJ_P0090288 Cox4i1 protein_coding protein_coding MGP_C3HHeJ_T0090289.1 MGP_C3HHeJ_G0033890.1 mouse_genomes_project 8 123150578 123152135 + Cox4i1 protein_coding retained_intron MGP_C3HHeJ_T0090290.1 MGP_C3HHeJ_G0033890.1 mouse_genomes_project 8 123150653 123156349 + MGP_C3HHeJ_P0090290 Cox4i1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090291.1 MGP_C3HHeJ_G0033890.1 mouse_genomes_project 8 123154893 123156417 + Cox4i1 protein_coding retained_intron MGP_C3HHeJ_T0090292.1 MGP_C3HHeJ_G0033890.1 mouse_genomes_project 8 123155455 123156511 + Cox4i1 protein_coding retained_intron MGP_C3HHeJ_T0088366.1 MGP_C3HHeJ_G0033273.1 mouse_genomes_project 8 45317900 45351793 + MGP_C3HHeJ_P0088366 Cfap97 protein_coding protein_coding MGP_C3HHeJ_T0088367.1 MGP_C3HHeJ_G0033273.1 mouse_genomes_project 8 45317984 45351789 + MGP_C3HHeJ_P0088367 Cfap97 protein_coding protein_coding MGP_C3HHeJ_T0088368.1 MGP_C3HHeJ_G0033273.1 mouse_genomes_project 8 45324273 45351791 + MGP_C3HHeJ_P0088368 Cfap97 protein_coding protein_coding MGP_C3HHeJ_T0090138.1 MGP_C3HHeJ_G0033840.1 mouse_genomes_project 8 115779033 115788629 + MGP_C3HHeJ_P0090138 Mon1b protein_coding protein_coding MGP_C3HHeJ_T0090139.1 MGP_C3HHeJ_G0033840.1 mouse_genomes_project 8 115779246 115788629 + MGP_C3HHeJ_P0090139 Mon1b protein_coding protein_coding MGP_C3HHeJ_T0088576.1 MGP_C3HHeJ_G0033337.1 mouse_genomes_project 8 64871024 64873493 + MGP_C3HHeJ_P0088576 Gm10663 protein_coding protein_coding MGP_C3HHeJ_T0015765.1 MGP_C3HHeJ_G0013869.1 mouse_genomes_project 8 35041625 35042670 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088832.1 MGP_C3HHeJ_G0033403.1 mouse_genomes_project 8 70579337 70590248 - MGP_C3HHeJ_P0088832 Ssbp4 protein_coding protein_coding MGP_C3HHeJ_T0088115.1 MGP_C3HHeJ_G0033189.1 mouse_genomes_project 8 25263286 25278952 + MGP_C3HHeJ_P0088115 Erlin2 protein_coding protein_coding MGP_C3HHeJ_T0100915.1 MGP_C3HHeJ_G0039109.1 mouse_genomes_project 8 86863820 86863944 + Gm23904 snoRNA snoRNA MGP_C3HHeJ_T0089991.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111511378 111526168 - MGP_C3HHeJ_P0089991 Dhodh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089992.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111513282 111514087 - Dhodh protein_coding processed_transcript MGP_C3HHeJ_T0089993.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111513508 111528308 - MGP_C3HHeJ_P0089993 Dhodh protein_coding protein_coding MGP_C3HHeJ_T0089994.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111513512 111528559 - MGP_C3HHeJ_P0089994 Dhodh protein_coding protein_coding MGP_C3HHeJ_T0089995.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111513936 111516318 - Dhodh protein_coding retained_intron MGP_C3HHeJ_T0089996.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111514008 111514986 - Dhodh protein_coding retained_intron MGP_C3HHeJ_T0089997.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111514081 111521477 - Dhodh protein_coding retained_intron MGP_C3HHeJ_T0089998.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111516065 111528302 - MGP_C3HHeJ_P0089998 Dhodh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089999.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111521289 111528356 - Dhodh protein_coding retained_intron MGP_C3HHeJ_T0090000.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111521296 111528356 - Dhodh protein_coding retained_intron MGP_C3HHeJ_T0090001.1 MGP_C3HHeJ_G0033794.1 mouse_genomes_project 8 111523268 111528609 - MGP_C3HHeJ_P0090001 Dhodh protein_coding protein_coding MGP_C3HHeJ_T0099654.1 MGP_C3HHeJ_G0037848.1 mouse_genomes_project 8 92865058 92865162 + Gm24254 snRNA snRNA MGP_C3HHeJ_T0015772.1 MGP_C3HHeJ_G0013876.1 mouse_genomes_project 8 51737171 51738137 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010867.1 MGP_C3HHeJ_G0009000.1 mouse_genomes_project 8 21210488 21210616 + Mir486 miRNA miRNA MGP_C3HHeJ_T0002298.1 MGP_C3HHeJ_G0002217.1 mouse_genomes_project 8 107359339 107360466 + TEC TEC MGP_C3HHeJ_T0089530.1 MGP_C3HHeJ_G0033618.1 mouse_genomes_project 8 92614456 92617896 - MGP_C3HHeJ_P0089530 Irx3 protein_coding protein_coding MGP_C3HHeJ_T0089531.1 MGP_C3HHeJ_G0033618.1 mouse_genomes_project 8 92614456 92617895 - MGP_C3HHeJ_P0089531 Irx3 protein_coding protein_coding MGP_C3HHeJ_T0087721.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10030812 10090231 - MGP_C3HHeJ_P0087721 Tubgcp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087722.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10030812 10090380 - MGP_C3HHeJ_P0087722 Tubgcp3 protein_coding protein_coding MGP_C3HHeJ_T0087723.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10030814 10054589 - Tubgcp3 protein_coding retained_intron MGP_C3HHeJ_T0087724.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10031702 10054562 - Tubgcp3 protein_coding retained_intron MGP_C3HHeJ_T0087725.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10038523 10075231 - Tubgcp3 protein_coding retained_intron MGP_C3HHeJ_T0087726.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10047130 10090255 - Tubgcp3 protein_coding retained_intron MGP_C3HHeJ_T0087727.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10066517 10073513 - Tubgcp3 protein_coding retained_intron MGP_C3HHeJ_T0087728.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10070813 10075245 - MGP_C3HHeJ_P0087728 Tubgcp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087729.1 MGP_C3HHeJ_G0033059.1 mouse_genomes_project 8 10070848 10090091 - MGP_C3HHeJ_P0087729 Tubgcp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100929.1 MGP_C3HHeJ_G0039123.1 mouse_genomes_project 8 113473187 113473319 + Gm24793 snoRNA snoRNA MGP_C3HHeJ_T0087567.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580554 582789 - Pcp2 protein_coding retained_intron MGP_C3HHeJ_T0087568.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580554 582789 - MGP_C3HHeJ_P0087568 Pcp2 protein_coding protein_coding MGP_C3HHeJ_T0087569.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580560 582789 - Pcp2 protein_coding retained_intron MGP_C3HHeJ_T0087570.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580560 582246 - MGP_C3HHeJ_P0087570 Pcp2 protein_coding protein_coding MGP_C3HHeJ_T0087571.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580560 582526 - MGP_C3HHeJ_P0087571 Pcp2 protein_coding protein_coding MGP_C3HHeJ_T0087572.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580560 582293 - MGP_C3HHeJ_P0087572 Pcp2 protein_coding protein_coding MGP_C3HHeJ_T0087573.1 MGP_C3HHeJ_G0033008.1 mouse_genomes_project 8 580563 582769 - Pcp2 protein_coding processed_transcript MGP_C3HHeJ_T0088599.1 MGP_C3HHeJ_G0033346.1 mouse_genomes_project 8 67390765 67415644 + MGP_C3HHeJ_P0088599 Nat3 protein_coding protein_coding MGP_C3HHeJ_T0088940.1 MGP_C3HHeJ_G0033442.1 mouse_genomes_project 8 71647605 71652176 - MGP_C3HHeJ_P0088940 Tmem221 protein_coding protein_coding MGP_C3HHeJ_T0088509.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60551919 60595944 - MGP_C3HHeJ_P0088509 Clcn3 protein_coding protein_coding MGP_C3HHeJ_T0088510.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60552396 60564493 - Clcn3 protein_coding processed_transcript MGP_C3HHeJ_T0088511.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60553432 60596071 - MGP_C3HHeJ_P0088511 Clcn3 protein_coding protein_coding MGP_C3HHeJ_T0088512.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60553459 60596556 - Clcn3 protein_coding retained_intron MGP_C3HHeJ_T0088513.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60553459 60625666 - MGP_C3HHeJ_P0088513 Clcn3 protein_coding protein_coding MGP_C3HHeJ_T0088514.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60553459 60625666 - MGP_C3HHeJ_P0088514 Clcn3 protein_coding protein_coding MGP_C3HHeJ_T0088515.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60569817 60596102 - Clcn3 protein_coding retained_intron MGP_C3HHeJ_T0088516.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60576812 60625671 - Clcn3 protein_coding retained_intron MGP_C3HHeJ_T0088517.1 MGP_C3HHeJ_G0033320.1 mouse_genomes_project 8 60579936 60625713 - Clcn3 protein_coding retained_intron MGP_C3HHeJ_T0089812.1 MGP_C3HHeJ_G0033725.1 mouse_genomes_project 8 107026794 107037411 - MGP_C3HHeJ_P0089812 protein_coding protein_coding MGP_C3HHeJ_T0089144.1 MGP_C3HHeJ_G0033508.1 mouse_genomes_project 8 82849594 82922784 - MGP_C3HHeJ_P0089144 Il15 protein_coding protein_coding MGP_C3HHeJ_T0087658.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482022 1508996 + MGP_C3HHeJ_P0087658 protein_coding protein_coding MGP_C3HHeJ_T0087659.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482136 1506067 + MGP_C3HHeJ_P0087659 protein_coding protein_coding MGP_C3HHeJ_T0087660.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482195 1522022 + MGP_C3HHeJ_P0087660 protein_coding protein_coding MGP_C3HHeJ_T0087661.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482398 1514024 + MGP_C3HHeJ_P0087661 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087662.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482445 1515454 + protein_coding retained_intron MGP_C3HHeJ_T0087663.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482448 1515296 + MGP_C3HHeJ_P0087663 protein_coding protein_coding MGP_C3HHeJ_T0087664.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482454 1512799 + protein_coding retained_intron MGP_C3HHeJ_T0087665.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482478 1512890 + protein_coding retained_intron MGP_C3HHeJ_T0087666.1 MGP_C3HHeJ_G0033030.1 mouse_genomes_project 8 1482517 1510865 + protein_coding retained_intron MGP_C3HHeJ_T0087606.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145485 1166567 + protein_coding retained_intron MGP_C3HHeJ_T0087607.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145485 1173293 + MGP_C3HHeJ_P0087607 protein_coding protein_coding MGP_C3HHeJ_T0087608.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145485 1187643 + MGP_C3HHeJ_P0087608 protein_coding protein_coding MGP_C3HHeJ_T0087609.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145492 1187818 + MGP_C3HHeJ_P0087609 protein_coding protein_coding MGP_C3HHeJ_T0087610.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145505 1187638 + MGP_C3HHeJ_P0087610 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087611.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145519 1181320 + protein_coding retained_intron MGP_C3HHeJ_T0087612.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1145657 1187638 + MGP_C3HHeJ_P0087612 protein_coding protein_coding MGP_C3HHeJ_T0087613.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1166874 1167716 + protein_coding retained_intron MGP_C3HHeJ_T0087614.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1170883 1182671 + protein_coding processed_transcript MGP_C3HHeJ_T0087615.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1180391 1185317 + protein_coding retained_intron MGP_C3HHeJ_T0087616.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1182966 1187634 + protein_coding retained_intron MGP_C3HHeJ_T0087617.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1183210 1185932 + protein_coding retained_intron MGP_C3HHeJ_T0087618.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1185320 1186195 + protein_coding retained_intron MGP_C3HHeJ_T0087619.1 MGP_C3HHeJ_G0033020.1 mouse_genomes_project 8 1185840 1190849 + MGP_C3HHeJ_P0087619 protein_coding protein_coding MGP_C3HHeJ_T0010895.1 MGP_C3HHeJ_G0009028.1 mouse_genomes_project 8 84748030 84748119 - Mir181c miRNA miRNA MGP_C3HHeJ_T0087591.1 MGP_C3HHeJ_G0033011.1 mouse_genomes_project 8 625117 627747 + MGP_C3HHeJ_P0087591 Mcemp1 protein_coding protein_coding MGP_C3HHeJ_T0089502.1 MGP_C3HHeJ_G0033612.1 mouse_genomes_project 8 91607015 91850941 + MGP_C3HHeJ_P0089502 Chd9 protein_coding protein_coding MGP_C3HHeJ_T0089503.1 MGP_C3HHeJ_G0033612.1 mouse_genomes_project 8 91607015 91850941 + MGP_C3HHeJ_P0089503 Chd9 protein_coding protein_coding MGP_C3HHeJ_T0090245.1 MGP_C3HHeJ_G0033881.1 mouse_genomes_project 8 122429329 122489759 + MGP_C3HHeJ_P0090245 Crispld2 protein_coding protein_coding MGP_C3HHeJ_T0090246.1 MGP_C3HHeJ_G0033881.1 mouse_genomes_project 8 122429399 122488542 + MGP_C3HHeJ_P0090246 Crispld2 protein_coding protein_coding MGP_C3HHeJ_T0090247.1 MGP_C3HHeJ_G0033881.1 mouse_genomes_project 8 122439573 122488542 + MGP_C3HHeJ_P0090247 Crispld2 protein_coding protein_coding MGP_C3HHeJ_T0090248.1 MGP_C3HHeJ_G0033881.1 mouse_genomes_project 8 122449464 122452659 + Crispld2 protein_coding processed_transcript MGP_C3HHeJ_T0090249.1 MGP_C3HHeJ_G0033881.1 mouse_genomes_project 8 122467760 122487437 + Crispld2 protein_coding retained_intron MGP_C3HHeJ_T0090371.1 MGP_C3HHeJ_G0033906.1 mouse_genomes_project 8 124897812 124901544 - MGP_C3HHeJ_P0090371 Trhr2 protein_coding protein_coding MGP_C3HHeJ_T0090420.1 MGP_C3HHeJ_G0033921.1 mouse_genomes_project 8 125342987 125384354 + MGP_C3HHeJ_P0090420 Acsf3 protein_coding protein_coding MGP_C3HHeJ_T0087796.1 MGP_C3HHeJ_G0033072.1 mouse_genomes_project 8 10789963 10830735 + MGP_C3HHeJ_P0087796 Tfdp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087797.1 MGP_C3HHeJ_G0033072.1 mouse_genomes_project 8 10791373 10831529 + MGP_C3HHeJ_P0087797 Tfdp1 protein_coding protein_coding MGP_C3HHeJ_T0088659.1 MGP_C3HHeJ_G0033362.1 mouse_genomes_project 8 69674188 69683084 - MGP_C3HHeJ_P0088659 Zfp963 protein_coding protein_coding MGP_C3HHeJ_T0088661.1 MGP_C3HHeJ_G0033362.1 mouse_genomes_project 8 69675483 69683092 - MGP_C3HHeJ_P0088661 Zfp963 protein_coding protein_coding MGP_C3HHeJ_T0099635.1 MGP_C3HHeJ_G0037829.1 mouse_genomes_project 8 49896465 49896528 + Gm23986 snRNA snRNA MGP_C3HHeJ_T0090300.1 MGP_C3HHeJ_G0033892.1 mouse_genomes_project 8 123596586 123600345 + MGP_C3HHeJ_P0090300 Foxf1 protein_coding protein_coding MGP_C3HHeJ_T0090481.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125849855 125907982 - MGP_C3HHeJ_P0090481 Fanca protein_coding protein_coding MGP_C3HHeJ_T0090482.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125850845 125855779 - Fanca protein_coding processed_transcript MGP_C3HHeJ_T0090483.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125851325 125907959 - MGP_C3HHeJ_P0090483 Fanca protein_coding unknown_likely_coding MGP_C3HHeJ_T0090484.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125852760 125859232 - MGP_C3HHeJ_P0090484 Fanca protein_coding protein_coding MGP_C3HHeJ_T0090485.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125855713 125858154 - MGP_C3HHeJ_P0090485 Fanca protein_coding protein_coding MGP_C3HHeJ_T0090486.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125859033 125865268 - Fanca protein_coding retained_intron MGP_C3HHeJ_T0090487.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125869305 125907966 - Fanca protein_coding retained_intron MGP_C3HHeJ_T0090488.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125869524 125900136 - MGP_C3HHeJ_P0090488 Fanca protein_coding protein_coding MGP_C3HHeJ_T0090489.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125872627 125875293 - Fanca protein_coding retained_intron MGP_C3HHeJ_T0090490.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125890563 125907966 - MGP_C3HHeJ_P0090490 Fanca protein_coding protein_coding MGP_C3HHeJ_T0090491.1 MGP_C3HHeJ_G0033935.1 mouse_genomes_project 8 125899063 125907966 - Fanca protein_coding retained_intron MGP_C3HHeJ_T0098189.1 MGP_C3HHeJ_G0036401.1 mouse_genomes_project 8 34379995 34380109 + Gm22216 rRNA rRNA MGP_C3HHeJ_T0005267.1 MGP_C3HHeJ_G0004458.1 mouse_genomes_project 8 13950995 13953721 + Gm16347 antisense antisense MGP_C3HHeJ_T0005268.1 MGP_C3HHeJ_G0004458.1 mouse_genomes_project 8 13951006 13954858 + Gm16347 antisense antisense MGP_C3HHeJ_T0088909.1 MGP_C3HHeJ_G0033432.1 mouse_genomes_project 8 71472260 71480168 + MGP_C3HHeJ_P0088909 Babam1 protein_coding protein_coding MGP_C3HHeJ_T0088610.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68236080 68612603 - MGP_C3HHeJ_P0088610 Csgalnact1 protein_coding protein_coding MGP_C3HHeJ_T0088611.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68237263 68612571 - MGP_C3HHeJ_P0088611 Csgalnact1 protein_coding protein_coding MGP_C3HHeJ_T0088612.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68270126 68612559 - MGP_C3HHeJ_P0088612 Csgalnact1 protein_coding protein_coding MGP_C3HHeJ_T0088613.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68341356 68612572 - Csgalnact1 protein_coding processed_transcript MGP_C3HHeJ_T0088614.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68440658 68612571 - Csgalnact1 protein_coding processed_transcript MGP_C3HHeJ_T0088615.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68440757 68612572 - Csgalnact1 protein_coding processed_transcript MGP_C3HHeJ_T0088616.1 MGP_C3HHeJ_G0033349.1 mouse_genomes_project 8 68526557 68612572 - Csgalnact1 protein_coding processed_transcript MGP_C3HHeJ_T0010871.1 MGP_C3HHeJ_G0009004.1 mouse_genomes_project 8 32696648 32696739 - Mir6395 miRNA miRNA MGP_C3HHeJ_T0089637.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95761854 95778715 + MGP_C3HHeJ_P0089637 Coq9 protein_coding protein_coding MGP_C3HHeJ_T0089638.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95761938 95774602 + Coq9 protein_coding retained_intron MGP_C3HHeJ_T0089639.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95761948 95766295 + Coq9 protein_coding retained_intron MGP_C3HHeJ_T0089640.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95761962 95777015 + Coq9 protein_coding retained_intron MGP_C3HHeJ_T0089641.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95761962 95777090 + MGP_C3HHeJ_P0089641 Coq9 protein_coding protein_coding MGP_C3HHeJ_T0089642.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95774008 95774802 + Coq9 protein_coding retained_intron MGP_C3HHeJ_T0089643.1 MGP_C3HHeJ_G0033656.1 mouse_genomes_project 8 95777334 95778157 + Coq9 protein_coding retained_intron MGP_C3HHeJ_T0089813.1 MGP_C3HHeJ_G0033726.1 mouse_genomes_project 8 107040398 107043102 + MGP_C3HHeJ_P0089813 Tmem208 protein_coding protein_coding MGP_C3HHeJ_T0089814.1 MGP_C3HHeJ_G0033726.1 mouse_genomes_project 8 107040406 107043100 + MGP_C3HHeJ_P0089814 Tmem208 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089815.1 MGP_C3HHeJ_G0033726.1 mouse_genomes_project 8 107040432 107043097 + MGP_C3HHeJ_P0089815 Tmem208 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089816.1 MGP_C3HHeJ_G0033726.1 mouse_genomes_project 8 107040439 107049171 + MGP_C3HHeJ_P0089816 Tmem208 protein_coding protein_coding MGP_C3HHeJ_T0089817.1 MGP_C3HHeJ_G0033726.1 mouse_genomes_project 8 107040499 107048753 + MGP_C3HHeJ_P0089817 Tmem208 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015808.1 MGP_C3HHeJ_G0013912.1 mouse_genomes_project 8 106480375 106481400 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090120.1 MGP_C3HHeJ_G0033832.1 mouse_genomes_project 8 113961722 113974646 - MGP_C3HHeJ_P0090120 Tmem170 protein_coding protein_coding MGP_C3HHeJ_T0090220.1 MGP_C3HHeJ_G0033872.1 mouse_genomes_project 8 122022261 122029566 - MGP_C3HHeJ_P0090220 Taf1c protein_coding protein_coding MGP_C3HHeJ_T0090221.1 MGP_C3HHeJ_G0033872.1 mouse_genomes_project 8 122022261 122029566 - MGP_C3HHeJ_P0090221 Taf1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090222.1 MGP_C3HHeJ_G0033872.1 mouse_genomes_project 8 122023105 122024132 - Taf1c protein_coding processed_transcript MGP_C3HHeJ_T0090223.1 MGP_C3HHeJ_G0033872.1 mouse_genomes_project 8 122023673 122025000 - Taf1c protein_coding retained_intron MGP_C3HHeJ_T0090224.1 MGP_C3HHeJ_G0033872.1 mouse_genomes_project 8 122023914 122025865 - Taf1c protein_coding processed_transcript MGP_C3HHeJ_T0100917.1 MGP_C3HHeJ_G0039111.1 mouse_genomes_project 8 90403702 90403834 - Gm24212 snoRNA snoRNA MGP_C3HHeJ_T0015744.1 MGP_C3HHeJ_G0013848.1 mouse_genomes_project 8 10394515 10394719 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089031.1 MGP_C3HHeJ_G0033471.1 mouse_genomes_project 8 72816346 72822037 - MGP_C3HHeJ_P0089031 Smim7 protein_coding protein_coding MGP_C3HHeJ_T0089032.1 MGP_C3HHeJ_G0033471.1 mouse_genomes_project 8 72818649 72821998 - MGP_C3HHeJ_P0089032 Smim7 protein_coding protein_coding MGP_C3HHeJ_T0089033.1 MGP_C3HHeJ_G0033471.1 mouse_genomes_project 8 72821536 72822011 - Smim7 protein_coding retained_intron MGP_C3HHeJ_T0018225.1 MGP_C3HHeJ_G0015469.1 mouse_genomes_project 8 23163562 23168277 + Gm16933 processed_transcript processed_transcript MGP_C3HHeJ_T0009022.1 MGP_C3HHeJ_G0007249.1 mouse_genomes_project 8 60933615 60944636 - 1700001D01Rik lincRNA lincRNA MGP_C3HHeJ_T0089960.1 MGP_C3HHeJ_G0033783.1 mouse_genomes_project 8 108970923 109011208 + MGP_C3HHeJ_P0089960 Cyb5b protein_coding protein_coding MGP_C3HHeJ_T0087671.1 MGP_C3HHeJ_G0033034.1 mouse_genomes_project 8 2134413 2155137 - MGP_C3HHeJ_P0087671 Slc10a2 protein_coding protein_coding MGP_C3HHeJ_T0088956.1 MGP_C3HHeJ_G0033447.1 mouse_genomes_project 8 71706575 71720416 + MGP_C3HHeJ_P0088956 Colgalt1 protein_coding protein_coding MGP_C3HHeJ_T0100914.1 MGP_C3HHeJ_G0039108.1 mouse_genomes_project 8 85674652 85674722 + Gm25506 snoRNA snoRNA MGP_C3HHeJ_T0090165.1 MGP_C3HHeJ_G0033849.1 mouse_genomes_project 8 118853339 119025026 - MGP_C3HHeJ_P0090165 Cdyl2 protein_coding protein_coding MGP_C3HHeJ_T0099656.1 MGP_C3HHeJ_G0037850.1 mouse_genomes_project 8 99827021 99827147 - Gm23494 snRNA snRNA MGP_C3HHeJ_T0089938.1 MGP_C3HHeJ_G0033775.1 mouse_genomes_project 8 108693596 108721471 + MGP_C3HHeJ_P0089938 Cirh1a protein_coding protein_coding MGP_C3HHeJ_T0015768.1 MGP_C3HHeJ_G0013872.1 mouse_genomes_project 8 40791692 40793759 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0102330.1 MGP_C3HHeJ_G0040293.1 mouse_genomes_project 8 100845223 100846612 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0005328.1 MGP_C3HHeJ_G0004509.1 mouse_genomes_project 8 124443257 124453312 + BC048644 antisense antisense MGP_C3HHeJ_T0005329.1 MGP_C3HHeJ_G0004509.1 mouse_genomes_project 8 124443257 124445241 + BC048644 antisense antisense MGP_C3HHeJ_T0010911.1 MGP_C3HHeJ_G0009044.1 mouse_genomes_project 8 96718772 96718836 - Mir7073 miRNA miRNA MGP_C3HHeJ_T0090412.1 MGP_C3HHeJ_G0033919.1 mouse_genomes_project 8 125178332 125181598 - MGP_C3HHeJ_P0090412 Pabpn1l protein_coding protein_coding MGP_C3HHeJ_T0088665.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69744313 69759167 + MGP_C3HHeJ_P0088665 Gmip protein_coding protein_coding MGP_C3HHeJ_T0088666.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69744324 69756290 + MGP_C3HHeJ_P0088666 Gmip protein_coding protein_coding MGP_C3HHeJ_T0088667.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69746125 69749502 + Gmip protein_coding processed_transcript MGP_C3HHeJ_T0088668.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69746281 69747259 + Gmip protein_coding processed_transcript MGP_C3HHeJ_T0088669.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69748912 69749750 + Gmip protein_coding retained_intron MGP_C3HHeJ_T0088670.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69749533 69751889 + Gmip protein_coding processed_transcript MGP_C3HHeJ_T0088671.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69754026 69754913 + Gmip protein_coding retained_intron MGP_C3HHeJ_T0088672.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69755146 69756295 + MGP_C3HHeJ_P0088672 Gmip protein_coding protein_coding MGP_C3HHeJ_T0088673.1 MGP_C3HHeJ_G0033366.1 mouse_genomes_project 8 69755382 69758625 + Gmip protein_coding processed_transcript MGP_C3HHeJ_T0099660.1 MGP_C3HHeJ_G0037854.1 mouse_genomes_project 8 111768278 111768380 - Gm25321 snRNA snRNA MGP_C3HHeJ_T0089928.1 MGP_C3HHeJ_G0033772.1 mouse_genomes_project 8 108462683 108646911 + MGP_C3HHeJ_P0089928 Tango6 protein_coding protein_coding MGP_C3HHeJ_T0090119.1 MGP_C3HHeJ_G0033831.1 mouse_genomes_project 8 113861956 113951201 - MGP_C3HHeJ_P0090119 Cfdp1 protein_coding protein_coding MGP_C3HHeJ_T0089495.1 MGP_C3HHeJ_G0033609.1 mouse_genomes_project 8 89403266 89459206 + MGP_C3HHeJ_P0089495 Cyld protein_coding protein_coding MGP_C3HHeJ_T0089496.1 MGP_C3HHeJ_G0033609.1 mouse_genomes_project 8 89411460 89459206 + MGP_C3HHeJ_P0089496 Cyld protein_coding protein_coding MGP_C3HHeJ_T0089497.1 MGP_C3HHeJ_G0033609.1 mouse_genomes_project 8 89411460 89459206 + MGP_C3HHeJ_P0089497 Cyld protein_coding protein_coding MGP_C3HHeJ_T0005273.1 MGP_C3HHeJ_G0004462.1 mouse_genomes_project 8 24268186 24287895 + 1700047A11Rik antisense antisense MGP_C3HHeJ_T0005274.1 MGP_C3HHeJ_G0004462.1 mouse_genomes_project 8 24268193 24274849 + 1700047A11Rik antisense antisense MGP_C3HHeJ_T0005313.1 MGP_C3HHeJ_G0004495.1 mouse_genomes_project 8 110816045 110819587 - Gm20686 antisense antisense MGP_C3HHeJ_T0009035.1 MGP_C3HHeJ_G0007260.1 mouse_genomes_project 8 81410126 81415364 - Gm27048 lincRNA lincRNA MGP_C3HHeJ_T0008988.1 MGP_C3HHeJ_G0007222.1 mouse_genomes_project 8 10636411 10646088 + 2810030D12Rik lincRNA lincRNA MGP_C3HHeJ_T0008989.1 MGP_C3HHeJ_G0007222.1 mouse_genomes_project 8 10636419 10646100 + 2810030D12Rik lincRNA lincRNA MGP_C3HHeJ_T0008990.1 MGP_C3HHeJ_G0007222.1 mouse_genomes_project 8 10636443 10637482 + 2810030D12Rik lincRNA lincRNA MGP_C3HHeJ_T0008991.1 MGP_C3HHeJ_G0007222.1 mouse_genomes_project 8 10636511 10646093 + 2810030D12Rik lincRNA lincRNA MGP_C3HHeJ_T0090547.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127243770 127297685 - MGP_C3HHeJ_P0090547 Ttc13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090548.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127243780 127297706 - MGP_C3HHeJ_P0090548 Ttc13 protein_coding protein_coding MGP_C3HHeJ_T0090549.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127243780 127297687 - MGP_C3HHeJ_P0090549 Ttc13 protein_coding protein_coding MGP_C3HHeJ_T0090550.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127243780 127297695 - MGP_C3HHeJ_P0090550 Ttc13 protein_coding protein_coding MGP_C3HHeJ_T0090551.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127245921 127246699 - Ttc13 protein_coding retained_intron MGP_C3HHeJ_T0090552.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127246427 127247933 - Ttc13 protein_coding retained_intron MGP_C3HHeJ_T0090553.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127246578 127251568 - Ttc13 protein_coding retained_intron MGP_C3HHeJ_T0090554.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127251654 127255163 - Ttc13 protein_coding retained_intron MGP_C3HHeJ_T0090555.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127252160 127254753 - Ttc13 protein_coding retained_intron MGP_C3HHeJ_T0090556.1 MGP_C3HHeJ_G0033959.1 mouse_genomes_project 8 127283968 127297704 - Ttc13 protein_coding retained_intron MGP_C3HHeJ_T0090604.1 MGP_C3HHeJ_G0033981.1 mouse_genomes_project 8 129633998 129659279 - MGP_C3HHeJ_P0090604 Rbm34 protein_coding protein_coding MGP_C3HHeJ_T0088140.1 MGP_C3HHeJ_G0033203.1 mouse_genomes_project 8 29561427 29583249 + MGP_C3HHeJ_P0088140 Rnf122 protein_coding protein_coding MGP_C3HHeJ_T0088141.1 MGP_C3HHeJ_G0033203.1 mouse_genomes_project 8 29561437 29573481 + Rnf122 protein_coding retained_intron MGP_C3HHeJ_T0088142.1 MGP_C3HHeJ_G0033203.1 mouse_genomes_project 8 29561755 29580494 + MGP_C3HHeJ_P0088142 Rnf122 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089730.1 MGP_C3HHeJ_G0033691.1 mouse_genomes_project 8 105851331 105873249 - MGP_C3HHeJ_P0089730 protein_coding protein_coding MGP_C3HHeJ_T0089731.1 MGP_C3HHeJ_G0033691.1 mouse_genomes_project 8 105851349 105872458 - MGP_C3HHeJ_P0089731 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089732.1 MGP_C3HHeJ_G0033691.1 mouse_genomes_project 8 105851632 105873227 - MGP_C3HHeJ_P0089732 protein_coding protein_coding MGP_C3HHeJ_T0089733.1 MGP_C3HHeJ_G0033691.1 mouse_genomes_project 8 105852251 105873340 - MGP_C3HHeJ_P0089733 protein_coding protein_coding MGP_C3HHeJ_T0090633.1 MGP_C3HHeJ_G0033983.1 mouse_genomes_project 8 131105075 131258539 + MGP_C3HHeJ_P0090633 Nrp1 protein_coding protein_coding MGP_C3HHeJ_T0089263.1 MGP_C3HHeJ_G0033550.1 mouse_genomes_project 8 85252886 85254406 - MGP_C3HHeJ_P0089263 Ier2 protein_coding protein_coding MGP_C3HHeJ_T0009045.1 MGP_C3HHeJ_G0007269.1 mouse_genomes_project 8 87572843 87573514 - Gm27168 lincRNA lincRNA MGP_C3HHeJ_T0090351.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124485235 124532741 + MGP_C3HHeJ_P0090351 Banp protein_coding protein_coding MGP_C3HHeJ_T0090352.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124485977 124562748 + MGP_C3HHeJ_P0090352 Banp protein_coding protein_coding MGP_C3HHeJ_T0090353.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124486029 124565829 + MGP_C3HHeJ_P0090353 Banp protein_coding protein_coding MGP_C3HHeJ_T0090354.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124486060 124532739 + MGP_C3HHeJ_P0090354 Banp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090355.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124486065 124562510 + MGP_C3HHeJ_P0090355 Banp protein_coding protein_coding MGP_C3HHeJ_T0090356.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124486070 124527127 + MGP_C3HHeJ_P0090356 Banp protein_coding protein_coding MGP_C3HHeJ_T0090357.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124486081 124527118 + MGP_C3HHeJ_P0090357 Banp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090358.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124486090 124527144 + MGP_C3HHeJ_P0090358 Banp protein_coding protein_coding MGP_C3HHeJ_T0090359.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124510355 124512407 + Banp protein_coding retained_intron MGP_C3HHeJ_T0090360.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124510403 124562208 + MGP_C3HHeJ_P0090360 Banp protein_coding protein_coding MGP_C3HHeJ_T0090361.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124514241 124525559 + Banp protein_coding retained_intron MGP_C3HHeJ_T0090362.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124527015 124532796 + Banp protein_coding retained_intron MGP_C3HHeJ_T0090363.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124527161 124562529 + MGP_C3HHeJ_P0090363 Banp protein_coding protein_coding MGP_C3HHeJ_T0090364.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124532646 124562180 + MGP_C3HHeJ_P0090364 Banp protein_coding protein_coding MGP_C3HHeJ_T0090365.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124536225 124557196 + Banp protein_coding processed_transcript MGP_C3HHeJ_T0090366.1 MGP_C3HHeJ_G0033904.1 mouse_genomes_project 8 124536403 124543732 + Banp protein_coding retained_intron MGP_C3HHeJ_T0099644.1 MGP_C3HHeJ_G0037838.1 mouse_genomes_project 8 72214551 72214709 + Gm25052 snRNA snRNA MGP_C3HHeJ_T0088043.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23676716 23722209 + MGP_C3HHeJ_P0088043 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088044.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23681836 23742627 + MGP_C3HHeJ_P0088044 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088045.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23681836 23742627 + MGP_C3HHeJ_P0088045 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088046.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23681856 23742627 + MGP_C3HHeJ_P0088046 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088047.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23681859 23741693 + MGP_C3HHeJ_P0088047 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088048.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23681876 23741182 + MGP_C3HHeJ_P0088048 Fgfr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088049.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23681959 23722299 + Fgfr1 protein_coding processed_transcript MGP_C3HHeJ_T0088050.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23682383 23741691 + MGP_C3HHeJ_P0088050 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088051.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23682903 23722370 + MGP_C3HHeJ_P0088051 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088052.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23695641 23741489 + MGP_C3HHeJ_P0088052 Fgfr1 protein_coding protein_coding MGP_C3HHeJ_T0088053.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23722257 23737139 + Fgfr1 protein_coding processed_transcript MGP_C3HHeJ_T0088054.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23724714 23730303 + Fgfr1 protein_coding retained_intron MGP_C3HHeJ_T0088055.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23729993 23741697 + Fgfr1 protein_coding retained_intron MGP_C3HHeJ_T0088056.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23733438 23741696 + Fgfr1 protein_coding retained_intron MGP_C3HHeJ_T0088057.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23736418 23739307 + Fgfr1 protein_coding retained_intron MGP_C3HHeJ_T0088058.1 MGP_C3HHeJ_G0033171.1 mouse_genomes_project 8 23736655 23739369 + Fgfr1 protein_coding retained_intron MGP_C3HHeJ_T0087701.1 MGP_C3HHeJ_G0033050.1 mouse_genomes_project 8 8898430 8906533 + MGP_C3HHeJ_P0087701 Ing1 protein_coding protein_coding MGP_C3HHeJ_T0008995.1 MGP_C3HHeJ_G0007226.1 mouse_genomes_project 8 22532350 22550078 + Gm26714 lincRNA lincRNA MGP_C3HHeJ_T0100881.1 MGP_C3HHeJ_G0039075.1 mouse_genomes_project 8 19657962 19658054 - snoRNA snoRNA MGP_C3HHeJ_T0090453.1 MGP_C3HHeJ_G0033928.1 mouse_genomes_project 8 125762327 125778949 + MGP_C3HHeJ_P0090453 Dpep1 protein_coding protein_coding MGP_C3HHeJ_T0088193.1 MGP_C3HHeJ_G0033221.1 mouse_genomes_project 8 32683907 32700996 + MGP_C3HHeJ_P0088193 Saraf protein_coding protein_coding MGP_C3HHeJ_T0015797.1 MGP_C3HHeJ_G0013901.1 mouse_genomes_project 8 86503486 86504549 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088279.1 MGP_C3HHeJ_G0033249.1 mouse_genomes_project 8 40102123 40197739 + MGP_C3HHeJ_P0088279 Pcm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088280.1 MGP_C3HHeJ_G0033249.1 mouse_genomes_project 8 40102186 40199825 + MGP_C3HHeJ_P0088280 Pcm1 protein_coding protein_coding MGP_C3HHeJ_T0089306.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85441689 85445740 - MGP_C3HHeJ_P0089306 Rad23a protein_coding protein_coding MGP_C3HHeJ_T0089307.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85442322 85448335 - MGP_C3HHeJ_P0089307 Rad23a protein_coding protein_coding MGP_C3HHeJ_T0089308.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85442580 85448359 - MGP_C3HHeJ_P0089308 Rad23a protein_coding protein_coding MGP_C3HHeJ_T0089309.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85443312 85448359 - MGP_C3HHeJ_P0089309 Rad23a protein_coding protein_coding MGP_C3HHeJ_T0089310.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85445414 85446359 - Rad23a protein_coding retained_intron MGP_C3HHeJ_T0089311.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85445427 85446373 - Rad23a protein_coding retained_intron MGP_C3HHeJ_T0089312.1 MGP_C3HHeJ_G0033558.1 mouse_genomes_project 8 85445991 85448330 - Rad23a protein_coding retained_intron MGP_C3HHeJ_T0097932.1 MGP_C3HHeJ_G0036144.1 mouse_genomes_project 8 75667043 75667581 + pseudogene pseudogene MGP_C3HHeJ_T0087540.1 MGP_C3HHeJ_G0032999.1 mouse_genomes_project 8 388491 400002 - MGP_C3HHeJ_P0087540 Pex11g protein_coding protein_coding MGP_C3HHeJ_T0087541.1 MGP_C3HHeJ_G0032999.1 mouse_genomes_project 8 388494 399967 - MGP_C3HHeJ_P0087541 Pex11g protein_coding protein_coding MGP_C3HHeJ_T0087542.1 MGP_C3HHeJ_G0032999.1 mouse_genomes_project 8 395507 399992 - MGP_C3HHeJ_P0087542 Pex11g protein_coding protein_coding MGP_C3HHeJ_T0100930.1 MGP_C3HHeJ_G0039124.1 mouse_genomes_project 8 115663094 115663225 - Gm25766 snoRNA snoRNA MGP_C3HHeJ_T0089984.1 MGP_C3HHeJ_G0033789.1 mouse_genomes_project 8 110589793 110687323 + MGP_C3HHeJ_P0089984 Zfhx3 protein_coding protein_coding MGP_C3HHeJ_T0089985.1 MGP_C3HHeJ_G0033789.1 mouse_genomes_project 8 110601368 110860378 + MGP_C3HHeJ_P0089985 Zfhx3 protein_coding protein_coding MGP_C3HHeJ_T0089949.1 MGP_C3HHeJ_G0033780.1 mouse_genomes_project 8 108869794 108874976 + MGP_C3HHeJ_P0089949 Nip7 protein_coding protein_coding MGP_C3HHeJ_T0089950.1 MGP_C3HHeJ_G0033780.1 mouse_genomes_project 8 108869794 108874976 + MGP_C3HHeJ_P0089950 Nip7 protein_coding protein_coding MGP_C3HHeJ_T0015790.1 MGP_C3HHeJ_G0013894.1 mouse_genomes_project 8 81785638 81786611 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087942.1 MGP_C3HHeJ_G0033139.1 mouse_genomes_project 8 20314299 20402112 + MGP_C3HHeJ_P0087942 Tpte protein_coding protein_coding MGP_C3HHeJ_T0090454.1 MGP_C3HHeJ_G0033929.1 mouse_genomes_project 8 125782146 125792154 - MGP_C3HHeJ_P0090454 Chmp1a protein_coding protein_coding MGP_C3HHeJ_T0090455.1 MGP_C3HHeJ_G0033929.1 mouse_genomes_project 8 125785557 125789163 - Chmp1a protein_coding retained_intron MGP_C3HHeJ_T0090456.1 MGP_C3HHeJ_G0033929.1 mouse_genomes_project 8 125788980 125792157 - Chmp1a protein_coding retained_intron MGP_C3HHeJ_T0088133.1 MGP_C3HHeJ_G0033200.1 mouse_genomes_project 8 26991799 27583452 - MGP_C3HHeJ_P0088133 Unc5d protein_coding protein_coding MGP_C3HHeJ_T0088518.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60635732 60774378 + MGP_C3HHeJ_P0088518 Nek1 protein_coding protein_coding MGP_C3HHeJ_T0088519.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60635732 60774385 + MGP_C3HHeJ_P0088519 Nek1 protein_coding protein_coding MGP_C3HHeJ_T0088520.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60635737 60687312 + Nek1 protein_coding retained_intron MGP_C3HHeJ_T0088521.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60635776 60750585 + Nek1 protein_coding retained_intron MGP_C3HHeJ_T0088522.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60635778 60672494 + Nek1 protein_coding retained_intron MGP_C3HHeJ_T0088523.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60635778 60671957 + Nek1 protein_coding retained_intron MGP_C3HHeJ_T0088524.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60636128 60727825 + MGP_C3HHeJ_P0088524 Nek1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088525.1 MGP_C3HHeJ_G0033321.1 mouse_genomes_project 8 60692603 60730594 + MGP_C3HHeJ_P0088525 Nek1 protein_coding protein_coding MGP_C3HHeJ_T0088549.1 MGP_C3HHeJ_G0033326.1 mouse_genomes_project 8 61753826 61831036 - MGP_C3HHeJ_P0088549 Anxa10 protein_coding protein_coding MGP_C3HHeJ_T0088550.1 MGP_C3HHeJ_G0033326.1 mouse_genomes_project 8 61754305 61831042 - MGP_C3HHeJ_P0088550 Anxa10 protein_coding protein_coding MGP_C3HHeJ_T0088965.1 MGP_C3HHeJ_G0033449.1 mouse_genomes_project 8 71773678 71788663 + MGP_C3HHeJ_P0088965 Jak3 protein_coding protein_coding MGP_C3HHeJ_T0088966.1 MGP_C3HHeJ_G0033449.1 mouse_genomes_project 8 71773678 71786643 + MGP_C3HHeJ_P0088966 Jak3 protein_coding protein_coding MGP_C3HHeJ_T0088967.1 MGP_C3HHeJ_G0033449.1 mouse_genomes_project 8 71773934 71778411 + Jak3 protein_coding retained_intron MGP_C3HHeJ_T0088968.1 MGP_C3HHeJ_G0033449.1 mouse_genomes_project 8 71774931 71786645 + MGP_C3HHeJ_P0088968 Jak3 protein_coding protein_coding MGP_C3HHeJ_T0088969.1 MGP_C3HHeJ_G0033449.1 mouse_genomes_project 8 71775715 71788312 + Jak3 protein_coding retained_intron MGP_C3HHeJ_T0090511.1 MGP_C3HHeJ_G0033942.1 mouse_genomes_project 8 126085434 126096958 - MGP_C3HHeJ_P0090511 Dbndd1 protein_coding protein_coding MGP_C3HHeJ_T0090512.1 MGP_C3HHeJ_G0033942.1 mouse_genomes_project 8 126086403 126096893 - MGP_C3HHeJ_P0090512 Dbndd1 protein_coding protein_coding MGP_C3HHeJ_T0090513.1 MGP_C3HHeJ_G0033942.1 mouse_genomes_project 8 126086403 126096966 - MGP_C3HHeJ_P0090513 Dbndd1 protein_coding protein_coding MGP_C3HHeJ_T0010915.1 MGP_C3HHeJ_G0009048.1 mouse_genomes_project 8 107021125 107021234 - Gm27320 miRNA miRNA MGP_C3HHeJ_T0090543.1 MGP_C3HHeJ_G0033957.1 mouse_genomes_project 8 127144907 127183645 + MGP_C3HHeJ_P0090543 Capn9 protein_coding protein_coding MGP_C3HHeJ_T0090544.1 MGP_C3HHeJ_G0033957.1 mouse_genomes_project 8 127144909 127156097 + MGP_C3HHeJ_P0090544 Capn9 protein_coding protein_coding MGP_C3HHeJ_T0090545.1 MGP_C3HHeJ_G0033957.1 mouse_genomes_project 8 127177414 127179621 + Capn9 protein_coding processed_transcript MGP_C3HHeJ_T0100888.1 MGP_C3HHeJ_G0039082.1 mouse_genomes_project 8 37815314 37815447 - Gm23128 snoRNA snoRNA MGP_C3HHeJ_T0018249.1 MGP_C3HHeJ_G0015478.1 mouse_genomes_project 8 76896430 77199986 - processed_transcript processed_transcript MGP_C3HHeJ_T0018250.1 MGP_C3HHeJ_G0015478.1 mouse_genomes_project 8 77050858 77200174 - processed_transcript processed_transcript MGP_C3HHeJ_T0018251.1 MGP_C3HHeJ_G0015478.1 mouse_genomes_project 8 77143978 77200622 - processed_transcript retained_intron MGP_C3HHeJ_T0090639.1 MGP_C3HHeJ_G0033986.1 mouse_genomes_project 8 131711204 131842613 - MGP_C3HHeJ_P0090639 protein_coding protein_coding MGP_C3HHeJ_T0089093.1 MGP_C3HHeJ_G0033490.1 mouse_genomes_project 8 78784061 78787697 - MGP_C3HHeJ_P0089093 Pou4f2 protein_coding protein_coding MGP_C3HHeJ_T0088348.1 MGP_C3HHeJ_G0033270.1 mouse_genomes_project 8 45140604 45143570 - MGP_C3HHeJ_P0088348 Ankrd37 protein_coding protein_coding MGP_C3HHeJ_T0088349.1 MGP_C3HHeJ_G0033270.1 mouse_genomes_project 8 45140613 45143570 - Ankrd37 protein_coding processed_transcript MGP_C3HHeJ_T0088350.1 MGP_C3HHeJ_G0033270.1 mouse_genomes_project 8 45140616 45143269 - Ankrd37 protein_coding retained_intron MGP_C3HHeJ_T0088351.1 MGP_C3HHeJ_G0033270.1 mouse_genomes_project 8 45140667 45141571 - Ankrd37 protein_coding processed_transcript MGP_C3HHeJ_T0088352.1 MGP_C3HHeJ_G0033270.1 mouse_genomes_project 8 45141834 45143552 - Ankrd37 protein_coding retained_intron MGP_C3HHeJ_T0089044.1 MGP_C3HHeJ_G0033475.1 mouse_genomes_project 8 72993531 72996215 + MGP_C3HHeJ_P0089044 F2rl3 protein_coding protein_coding MGP_C3HHeJ_T0087600.1 MGP_C3HHeJ_G0033018.1 mouse_genomes_project 8 879257 888442 - MGP_C3HHeJ_P0087600 Cd209b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087601.1 MGP_C3HHeJ_G0033018.1 mouse_genomes_project 8 879259 888431 - MGP_C3HHeJ_P0087601 Cd209b protein_coding protein_coding MGP_C3HHeJ_T0087602.1 MGP_C3HHeJ_G0033018.1 mouse_genomes_project 8 880208 888431 - MGP_C3HHeJ_P0087602 Cd209b protein_coding protein_coding MGP_C3HHeJ_T0087603.1 MGP_C3HHeJ_G0033018.1 mouse_genomes_project 8 880279 888411 - MGP_C3HHeJ_P0087603 Cd209b protein_coding protein_coding MGP_C3HHeJ_T0090218.1 MGP_C3HHeJ_G0033870.1 mouse_genomes_project 8 121982901 121997284 - MGP_C3HHeJ_P0090218 Hsdl1 protein_coding protein_coding MGP_C3HHeJ_T0089593.1 MGP_C3HHeJ_G0033642.1 mouse_genomes_project 8 95083242 95084479 + MGP_C3HHeJ_P0089593 Mt1 protein_coding protein_coding MGP_C3HHeJ_T0088126.1 MGP_C3HHeJ_G0033195.1 mouse_genomes_project 8 25478006 25481844 - MGP_C3HHeJ_P0088126 Adrb3 protein_coding protein_coding MGP_C3HHeJ_T0088127.1 MGP_C3HHeJ_G0033195.1 mouse_genomes_project 8 25478236 25480840 - MGP_C3HHeJ_P0088127 Adrb3 protein_coding protein_coding MGP_C3HHeJ_T0088128.1 MGP_C3HHeJ_G0033195.1 mouse_genomes_project 8 25479032 25480751 - MGP_C3HHeJ_P0088128 Adrb3 protein_coding protein_coding MGP_C3HHeJ_T0089469.1 MGP_C3HHeJ_G0033602.1 mouse_genomes_project 8 88821704 88854662 + MGP_C3HHeJ_P0089469 Heatr3 protein_coding protein_coding MGP_C3HHeJ_T0089470.1 MGP_C3HHeJ_G0033602.1 mouse_genomes_project 8 88839385 88841076 + Heatr3 protein_coding retained_intron MGP_C3HHeJ_T0089471.1 MGP_C3HHeJ_G0033602.1 mouse_genomes_project 8 88844262 88854655 + Heatr3 protein_coding retained_intron MGP_C3HHeJ_T0089472.1 MGP_C3HHeJ_G0033602.1 mouse_genomes_project 8 88847300 88849651 + Heatr3 protein_coding retained_intron MGP_C3HHeJ_T0089124.1 MGP_C3HHeJ_G0033504.1 mouse_genomes_project 8 81161284 81203947 - MGP_C3HHeJ_P0089124 Smarca5 protein_coding protein_coding MGP_C3HHeJ_T0089125.1 MGP_C3HHeJ_G0033504.1 mouse_genomes_project 8 81168269 81203925 - Smarca5 protein_coding processed_transcript MGP_C3HHeJ_T0089126.1 MGP_C3HHeJ_G0033504.1 mouse_genomes_project 8 81172207 81174480 - Smarca5 protein_coding retained_intron MGP_C3HHeJ_T0089127.1 MGP_C3HHeJ_G0033504.1 mouse_genomes_project 8 81172519 81173643 - Smarca5 protein_coding retained_intron MGP_C3HHeJ_T0089128.1 MGP_C3HHeJ_G0033504.1 mouse_genomes_project 8 81179995 81181616 - Smarca5 protein_coding retained_intron MGP_C3HHeJ_T0089129.1 MGP_C3HHeJ_G0033504.1 mouse_genomes_project 8 81190120 81190931 - Smarca5 protein_coding retained_intron MGP_C3HHeJ_T0089921.1 MGP_C3HHeJ_G0033767.1 mouse_genomes_project 8 108014260 108099993 - MGP_C3HHeJ_P0089921 Smpd3 protein_coding protein_coding MGP_C3HHeJ_T0088151.1 MGP_C3HHeJ_G0033209.1 mouse_genomes_project 8 31898310 31929051 + MGP_C3HHeJ_P0088151 Purg protein_coding protein_coding MGP_C3HHeJ_T0088152.1 MGP_C3HHeJ_G0033209.1 mouse_genomes_project 8 31898310 31899517 + MGP_C3HHeJ_P0088152 Purg protein_coding protein_coding MGP_C3HHeJ_T0089206.1 MGP_C3HHeJ_G0033529.1 mouse_genomes_project 8 84514282 84528761 + MGP_C3HHeJ_P0089206 Asf1b protein_coding protein_coding MGP_C3HHeJ_T0089207.1 MGP_C3HHeJ_G0033529.1 mouse_genomes_project 8 84514489 84526415 + Asf1b protein_coding processed_transcript MGP_C3HHeJ_T0089208.1 MGP_C3HHeJ_G0033529.1 mouse_genomes_project 8 84523585 84527108 + Asf1b protein_coding retained_intron MGP_C3HHeJ_T0088196.1 MGP_C3HHeJ_G0033224.1 mouse_genomes_project 8 33397260 33534250 - MGP_C3HHeJ_P0088196 Tnks protein_coding protein_coding MGP_C3HHeJ_T0090328.1 MGP_C3HHeJ_G0033899.1 mouse_genomes_project 8 124136205 124142110 - MGP_C3HHeJ_P0090328 Zcchc14 protein_coding protein_coding MGP_C3HHeJ_T0090329.1 MGP_C3HHeJ_G0033899.1 mouse_genomes_project 8 124138130 124190875 - MGP_C3HHeJ_P0090329 Zcchc14 protein_coding protein_coding MGP_C3HHeJ_T0090330.1 MGP_C3HHeJ_G0033899.1 mouse_genomes_project 8 124143809 124144814 - Zcchc14 protein_coding retained_intron MGP_C3HHeJ_T0090331.1 MGP_C3HHeJ_G0033899.1 mouse_genomes_project 8 124146055 124166513 - Zcchc14 protein_coding retained_intron MGP_C3HHeJ_T0090040.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112847985 112854684 + MGP_C3HHeJ_P0090040 Cog4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090041.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112847995 112853301 + MGP_C3HHeJ_P0090041 Cog4 protein_coding protein_coding MGP_C3HHeJ_T0090042.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112848000 112851229 + Cog4 protein_coding retained_intron MGP_C3HHeJ_T0090043.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112848012 112854748 + Cog4 protein_coding processed_transcript MGP_C3HHeJ_T0090044.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112848012 112883666 + MGP_C3HHeJ_P0090044 Cog4 protein_coding protein_coding MGP_C3HHeJ_T0090045.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112848012 112854785 + MGP_C3HHeJ_P0090045 Cog4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090046.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112848012 112854739 + MGP_C3HHeJ_P0090046 Cog4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090047.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112848015 112883299 + MGP_C3HHeJ_P0090047 Cog4 protein_coding protein_coding MGP_C3HHeJ_T0090048.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112850826 112883655 + MGP_C3HHeJ_P0090048 Cog4 protein_coding protein_coding MGP_C3HHeJ_T0090049.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112860622 112869163 + Cog4 protein_coding retained_intron MGP_C3HHeJ_T0090050.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112860777 112883299 + MGP_C3HHeJ_P0090050 Cog4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090051.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112864010 112867565 + Cog4 protein_coding retained_intron MGP_C3HHeJ_T0090052.1 MGP_C3HHeJ_G0033813.1 mouse_genomes_project 8 112882402 112883190 + Cog4 protein_coding retained_intron MGP_C3HHeJ_T0089542.1 MGP_C3HHeJ_G0033625.1 mouse_genomes_project 8 93890493 93917332 - MGP_C3HHeJ_P0089542 Ces1a protein_coding protein_coding MGP_C3HHeJ_T0089627.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95739753 95761892 - MGP_C3HHeJ_P0089627 Ciapin1 protein_coding protein_coding MGP_C3HHeJ_T0089628.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95742492 95746668 - MGP_C3HHeJ_P0089628 Ciapin1 protein_coding protein_coding MGP_C3HHeJ_T0089629.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95742866 95744128 - Ciapin1 protein_coding retained_intron MGP_C3HHeJ_T0089630.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95742952 95746674 - Ciapin1 protein_coding processed_transcript MGP_C3HHeJ_T0089631.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95743642 95753130 - MGP_C3HHeJ_P0089631 Ciapin1 protein_coding protein_coding MGP_C3HHeJ_T0089632.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95744570 95746672 - Ciapin1 protein_coding retained_intron MGP_C3HHeJ_T0089633.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95745153 95751363 - Ciapin1 protein_coding processed_transcript MGP_C3HHeJ_T0089634.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95748027 95761799 - MGP_C3HHeJ_P0089634 Ciapin1 protein_coding protein_coding MGP_C3HHeJ_T0089635.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95751314 95761795 - Ciapin1 protein_coding processed_transcript MGP_C3HHeJ_T0089636.1 MGP_C3HHeJ_G0033655.1 mouse_genomes_project 8 95753123 95761576 - Ciapin1 protein_coding processed_transcript MGP_C3HHeJ_T0090086.1 MGP_C3HHeJ_G0033822.1 mouse_genomes_project 8 113316284 113346698 - MGP_C3HHeJ_P0090086 Rfwd3 protein_coding protein_coding MGP_C3HHeJ_T0089173.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84223420 84253389 - MGP_C3HHeJ_P0089173 Pkn1 protein_coding protein_coding MGP_C3HHeJ_T0089174.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84223749 84248281 - MGP_C3HHeJ_P0089174 Pkn1 protein_coding protein_coding MGP_C3HHeJ_T0089175.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84223757 84253307 - MGP_C3HHeJ_P0089175 Pkn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089176.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84223785 84229189 - Pkn1 protein_coding retained_intron MGP_C3HHeJ_T0089177.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84224245 84225439 - Pkn1 protein_coding processed_transcript MGP_C3HHeJ_T0089178.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84226685 84227252 - Pkn1 protein_coding retained_intron MGP_C3HHeJ_T0089179.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84227138 84231429 - Pkn1 protein_coding processed_transcript MGP_C3HHeJ_T0089180.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84231377 84235228 - Pkn1 protein_coding retained_intron MGP_C3HHeJ_T0089181.1 MGP_C3HHeJ_G0033524.1 mouse_genomes_project 8 84244136 84253377 - Pkn1 protein_coding retained_intron MGP_C3HHeJ_T0098190.1 MGP_C3HHeJ_G0036402.1 mouse_genomes_project 8 43667626 43667733 + Gm26089 rRNA rRNA MGP_C3HHeJ_T0102325.1 MGP_C3HHeJ_G0040288.1 mouse_genomes_project 8 16886978 16889478 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0088083.1 MGP_C3HHeJ_G0033178.1 mouse_genomes_project 8 23961381 23979756 + MGP_C3HHeJ_P0088083 Lsm1 protein_coding protein_coding MGP_C3HHeJ_T0015756.1 MGP_C3HHeJ_G0013860.1 mouse_genomes_project 8 19795116 19795557 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088207.1 MGP_C3HHeJ_G0033232.1 mouse_genomes_project 8 35124511 35189017 + MGP_C3HHeJ_P0088207 6430573F11Rik protein_coding protein_coding MGP_C3HHeJ_T0088208.1 MGP_C3HHeJ_G0033232.1 mouse_genomes_project 8 35124537 35190378 + MGP_C3HHeJ_P0088208 6430573F11Rik protein_coding protein_coding MGP_C3HHeJ_T0088209.1 MGP_C3HHeJ_G0033232.1 mouse_genomes_project 8 35125145 35187652 + MGP_C3HHeJ_P0088209 6430573F11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088210.1 MGP_C3HHeJ_G0033232.1 mouse_genomes_project 8 35164174 35189070 + MGP_C3HHeJ_P0088210 6430573F11Rik protein_coding protein_coding MGP_C3HHeJ_T0088211.1 MGP_C3HHeJ_G0033232.1 mouse_genomes_project 8 35181714 35188654 + 6430573F11Rik protein_coding processed_transcript MGP_C3HHeJ_T0090532.1 MGP_C3HHeJ_G0033954.1 mouse_genomes_project 8 126916536 126934409 - MGP_C3HHeJ_P0090532 Pgbd5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090533.1 MGP_C3HHeJ_G0033954.1 mouse_genomes_project 8 126916541 126991384 - MGP_C3HHeJ_P0090533 Pgbd5 protein_coding protein_coding MGP_C3HHeJ_T0090534.1 MGP_C3HHeJ_G0033954.1 mouse_genomes_project 8 126916545 126986085 - MGP_C3HHeJ_P0090534 Pgbd5 protein_coding protein_coding MGP_C3HHeJ_T0090535.1 MGP_C3HHeJ_G0033954.1 mouse_genomes_project 8 126919365 126923428 - Pgbd5 protein_coding processed_transcript MGP_C3HHeJ_T0090536.1 MGP_C3HHeJ_G0033954.1 mouse_genomes_project 8 126919381 126922993 - Pgbd5 protein_coding retained_intron MGP_C3HHeJ_T0008997.1 MGP_C3HHeJ_G0007228.1 mouse_genomes_project 8 25389670 25396514 + lincRNA lincRNA MGP_C3HHeJ_T0090583.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128359652 128374951 + Ntpcr protein_coding processed_transcript MGP_C3HHeJ_T0090584.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128359717 128377461 + MGP_C3HHeJ_P0090584 Ntpcr protein_coding protein_coding MGP_C3HHeJ_T0090585.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128359721 128367788 + Ntpcr protein_coding processed_transcript MGP_C3HHeJ_T0090586.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128362779 128377686 + Ntpcr protein_coding processed_transcript MGP_C3HHeJ_T0090587.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128363854 128377887 + MGP_C3HHeJ_P0090587 Ntpcr protein_coding protein_coding MGP_C3HHeJ_T0090588.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128363884 128365981 + Ntpcr protein_coding retained_intron MGP_C3HHeJ_T0090589.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128363889 128368831 + MGP_C3HHeJ_P0090589 Ntpcr protein_coding protein_coding MGP_C3HHeJ_T0090590.1 MGP_C3HHeJ_G0033972.1 mouse_genomes_project 8 128365486 128377649 + MGP_C3HHeJ_P0090590 Ntpcr protein_coding protein_coding MGP_C3HHeJ_T0090638.1 MGP_C3HHeJ_G0033985.1 mouse_genomes_project 8 131503440 131554714 - MGP_C3HHeJ_P0090638 Gm3952 protein_coding protein_coding MGP_C3HHeJ_T0087916.1 MGP_C3HHeJ_G0033126.1 mouse_genomes_project 8 19914247 19915227 - MGP_C3HHeJ_P0087916 Defb11 protein_coding protein_coding MGP_C3HHeJ_T0089164.1 MGP_C3HHeJ_G0033519.1 mouse_genomes_project 8 84105741 84112077 + MGP_C3HHeJ_P0089164 Ndufb7 protein_coding protein_coding MGP_C3HHeJ_T0089165.1 MGP_C3HHeJ_G0033519.1 mouse_genomes_project 8 84105828 84112077 + Ndufb7 protein_coding retained_intron MGP_C3HHeJ_T0088868.1 MGP_C3HHeJ_G0033423.1 mouse_genomes_project 8 70906410 70910042 - MGP_C3HHeJ_P0088868 Rpl18a protein_coding protein_coding MGP_C3HHeJ_T0088291.1 MGP_C3HHeJ_G0033256.1 mouse_genomes_project 8 42698520 42702332 - MGP_C3HHeJ_P0088291 protein_coding protein_coding MGP_C3HHeJ_T0089848.1 MGP_C3HHeJ_G0033738.1 mouse_genomes_project 8 107362162 107409633 + Ctcf protein_coding processed_transcript MGP_C3HHeJ_T0089849.1 MGP_C3HHeJ_G0033738.1 mouse_genomes_project 8 107362173 107410908 + MGP_C3HHeJ_P0089849 Ctcf protein_coding protein_coding MGP_C3HHeJ_T0089850.1 MGP_C3HHeJ_G0033738.1 mouse_genomes_project 8 107362529 107391236 + Ctcf protein_coding processed_transcript MGP_C3HHeJ_T0089851.1 MGP_C3HHeJ_G0033738.1 mouse_genomes_project 8 107362660 107390953 + Ctcf protein_coding processed_transcript MGP_C3HHeJ_T0089852.1 MGP_C3HHeJ_G0033738.1 mouse_genomes_project 8 107403085 107408603 + Ctcf protein_coding retained_intron MGP_C3HHeJ_T0089853.1 MGP_C3HHeJ_G0033738.1 mouse_genomes_project 8 107403085 107406642 + Ctcf protein_coding processed_transcript MGP_C3HHeJ_T0088692.1 MGP_C3HHeJ_G0033373.1 mouse_genomes_project 8 69855810 69899672 - MGP_C3HHeJ_P0088692 Gatad2a protein_coding unknown_likely_coding MGP_C3HHeJ_T0088693.1 MGP_C3HHeJ_G0033373.1 mouse_genomes_project 8 69855815 69944163 - MGP_C3HHeJ_P0088693 Gatad2a protein_coding protein_coding MGP_C3HHeJ_T0088694.1 MGP_C3HHeJ_G0033373.1 mouse_genomes_project 8 69855815 69923254 - MGP_C3HHeJ_P0088694 Gatad2a protein_coding protein_coding MGP_C3HHeJ_T0088695.1 MGP_C3HHeJ_G0033373.1 mouse_genomes_project 8 69855815 69944163 - MGP_C3HHeJ_P0088695 Gatad2a protein_coding protein_coding MGP_C3HHeJ_T0088704.1 MGP_C3HHeJ_G0033377.1 mouse_genomes_project 8 70035987 70043285 + MGP_C3HHeJ_P0088704 Hapln4 protein_coding protein_coding MGP_C3HHeJ_T0015750.1 MGP_C3HHeJ_G0013854.1 mouse_genomes_project 8 17241983 17242503 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088451.1 MGP_C3HHeJ_G0033301.1 mouse_genomes_project 8 54154612 54168780 + MGP_C3HHeJ_P0088451 Spata4 protein_coding protein_coding MGP_C3HHeJ_T0089428.1 MGP_C3HHeJ_G0033592.1 mouse_genomes_project 8 86360097 86491042 - MGP_C3HHeJ_P0089428 Itfg1 protein_coding protein_coding MGP_C3HHeJ_T0089703.1 MGP_C3HHeJ_G0033679.1 mouse_genomes_project 8 96806269 96826036 - MGP_C3HHeJ_P0089703 Slc38a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089704.1 MGP_C3HHeJ_G0033679.1 mouse_genomes_project 8 96811456 96813235 - Slc38a7 protein_coding retained_intron MGP_C3HHeJ_T0089705.1 MGP_C3HHeJ_G0033679.1 mouse_genomes_project 8 96813433 96815409 - Slc38a7 protein_coding retained_intron MGP_C3HHeJ_T0015802.1 MGP_C3HHeJ_G0013906.1 mouse_genomes_project 8 95757595 95760050 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090131.1 MGP_C3HHeJ_G0033838.1 mouse_genomes_project 8 114115506 114127844 + MGP_C3HHeJ_P0090131 Terf2ip protein_coding protein_coding MGP_C3HHeJ_T0087683.1 MGP_C3HHeJ_G0033043.1 mouse_genomes_project 8 7524901 7923299 + MGP_C3HHeJ_P0087683 Myo16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087684.1 MGP_C3HHeJ_G0033043.1 mouse_genomes_project 8 7550257 7923290 + MGP_C3HHeJ_P0087684 Myo16 protein_coding protein_coding MGP_C3HHeJ_T0088202.1 MGP_C3HHeJ_G0033229.1 mouse_genomes_project 8 34460875 34462728 - MGP_C3HHeJ_P0088202 Cldn23 protein_coding protein_coding MGP_C3HHeJ_T0089131.1 MGP_C3HHeJ_G0033506.1 mouse_genomes_project 8 81460827 81494115 - MGP_C3HHeJ_P0089131 Usp38 protein_coding protein_coding MGP_C3HHeJ_T0089626.1 MGP_C3HHeJ_G0033654.1 mouse_genomes_project 8 95730533 95732116 + MGP_C3HHeJ_P0089626 Ccl17 protein_coding protein_coding MGP_C3HHeJ_T0088944.1 MGP_C3HHeJ_G0033445.1 mouse_genomes_project 8 71686085 71690187 + MGP_C3HHeJ_P0088944 Pgls protein_coding protein_coding MGP_C3HHeJ_T0088945.1 MGP_C3HHeJ_G0033445.1 mouse_genomes_project 8 71686093 71697455 + MGP_C3HHeJ_P0088945 Pgls protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088946.1 MGP_C3HHeJ_G0033445.1 mouse_genomes_project 8 71686120 71689584 + Pgls protein_coding retained_intron MGP_C3HHeJ_T0088947.1 MGP_C3HHeJ_G0033445.1 mouse_genomes_project 8 71686146 71689024 + MGP_C3HHeJ_P0088947 Pgls protein_coding protein_coding MGP_C3HHeJ_T0002292.1 MGP_C3HHeJ_G0002212.1 mouse_genomes_project 8 43300677 43301505 - TEC TEC MGP_C3HHeJ_T0090493.1 MGP_C3HHeJ_G0033937.1 mouse_genomes_project 8 125965559 125995085 + MGP_C3HHeJ_P0090493 Tcf25 protein_coding protein_coding MGP_C3HHeJ_T0090494.1 MGP_C3HHeJ_G0033937.1 mouse_genomes_project 8 125965570 125997367 + MGP_C3HHeJ_P0090494 Tcf25 protein_coding protein_coding MGP_C3HHeJ_T0010893.1 MGP_C3HHeJ_G0009026.1 mouse_genomes_project 8 84647266 84647354 + Mir709 miRNA miRNA MGP_C3HHeJ_T0087992.1 MGP_C3HHeJ_G0033156.1 mouse_genomes_project 8 21494223 21533377 + MGP_C3HHeJ_P0087992 Sfrp1 protein_coding protein_coding MGP_C3HHeJ_T0089736.1 MGP_C3HHeJ_G0033694.1 mouse_genomes_project 8 105913688 105924359 + MGP_C3HHeJ_P0089736 Cmtm3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009040.1 MGP_C3HHeJ_G0007264.1 mouse_genomes_project 8 84762572 84768314 - Gm26887 lincRNA lincRNA MGP_C3HHeJ_T0098185.1 MGP_C3HHeJ_G0036397.1 mouse_genomes_project 8 2117098 2117217 - n-R5s93 rRNA rRNA MGP_C3HHeJ_T0089152.1 MGP_C3HHeJ_G0033514.1 mouse_genomes_project 8 83835690 83861020 - MGP_C3HHeJ_P0089152 Elmod2 protein_coding protein_coding MGP_C3HHeJ_T0089153.1 MGP_C3HHeJ_G0033514.1 mouse_genomes_project 8 83836080 83861020 - MGP_C3HHeJ_P0089153 Elmod2 protein_coding protein_coding MGP_C3HHeJ_T0089154.1 MGP_C3HHeJ_G0033514.1 mouse_genomes_project 8 83838725 83853140 - Elmod2 protein_coding retained_intron MGP_C3HHeJ_T0089155.1 MGP_C3HHeJ_G0033514.1 mouse_genomes_project 8 83841009 83859983 - Elmod2 protein_coding retained_intron MGP_C3HHeJ_T0089156.1 MGP_C3HHeJ_G0033514.1 mouse_genomes_project 8 83852733 83860938 - Elmod2 protein_coding retained_intron MGP_C3HHeJ_T0089157.1 MGP_C3HHeJ_G0033514.1 mouse_genomes_project 8 83857223 83860938 - Elmod2 protein_coding retained_intron MGP_C3HHeJ_T0087987.1 MGP_C3HHeJ_G0033153.1 mouse_genomes_project 8 21241937 21277597 - MGP_C3HHeJ_P0087987 Gpat4 protein_coding protein_coding MGP_C3HHeJ_T0088203.1 MGP_C3HHeJ_G0033230.1 mouse_genomes_project 8 34758854 34813125 + MGP_C3HHeJ_P0088203 D8Ertd82e protein_coding protein_coding MGP_C3HHeJ_T0088204.1 MGP_C3HHeJ_G0033230.1 mouse_genomes_project 8 34758887 34770634 + D8Ertd82e protein_coding retained_intron MGP_C3HHeJ_T0088205.1 MGP_C3HHeJ_G0033230.1 mouse_genomes_project 8 34758887 34766771 + D8Ertd82e protein_coding retained_intron MGP_C3HHeJ_T0100937.1 MGP_C3HHeJ_G0039131.1 mouse_genomes_project 8 131784738 131784870 + Gm22545 snoRNA snoRNA MGP_C3HHeJ_T0011622.1 MGP_C3HHeJ_G0009755.1 mouse_genomes_project 8 30144273 30144374 - Gm24184 misc_RNA misc_RNA MGP_C3HHeJ_T0099646.1 MGP_C3HHeJ_G0037840.1 mouse_genomes_project 8 77504090 77504262 + Gm23260 snRNA snRNA MGP_C3HHeJ_T0090148.1 MGP_C3HHeJ_G0033844.1 mouse_genomes_project 8 116371209 116400653 + Vat1l protein_coding processed_transcript MGP_C3HHeJ_T0090149.1 MGP_C3HHeJ_G0033844.1 mouse_genomes_project 8 116371227 116549522 + MGP_C3HHeJ_P0090149 Vat1l protein_coding protein_coding MGP_C3HHeJ_T0090150.1 MGP_C3HHeJ_G0033844.1 mouse_genomes_project 8 116371231 116400647 + MGP_C3HHeJ_P0090150 Vat1l protein_coding protein_coding MGP_C3HHeJ_T0090151.1 MGP_C3HHeJ_G0033844.1 mouse_genomes_project 8 116543566 116549521 + Vat1l protein_coding retained_intron MGP_C3HHeJ_T0088871.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71293967 71325481 - MGP_C3HHeJ_P0088871 Haus8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088872.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71296674 71325954 - MGP_C3HHeJ_P0088872 Haus8 protein_coding protein_coding MGP_C3HHeJ_T0088873.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71296674 71325397 - MGP_C3HHeJ_P0088873 Haus8 protein_coding protein_coding MGP_C3HHeJ_T0088874.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71300982 71325481 - Haus8 protein_coding processed_transcript MGP_C3HHeJ_T0088875.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71301577 71302193 - Haus8 protein_coding retained_intron MGP_C3HHeJ_T0088876.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71301604 71325499 - Haus8 protein_coding processed_transcript MGP_C3HHeJ_T0088877.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71302577 71325463 - Haus8 protein_coding retained_intron MGP_C3HHeJ_T0088878.1 MGP_C3HHeJ_G0033426.1 mouse_genomes_project 8 71310766 71325379 - Haus8 protein_coding processed_transcript MGP_C3HHeJ_T0009099.1 MGP_C3HHeJ_G0007303.1 mouse_genomes_project 8 123063682 123069945 + Gm10614 lincRNA lincRNA MGP_C3HHeJ_T0010868.1 MGP_C3HHeJ_G0009001.1 mouse_genomes_project 8 21210506 21210596 - Mir3107 miRNA miRNA MGP_C3HHeJ_T0089721.1 MGP_C3HHeJ_G0033686.1 mouse_genomes_project 8 105638358 105682660 + MGP_C3HHeJ_P0089721 Cdh5 protein_coding protein_coding MGP_C3HHeJ_T0089596.1 MGP_C3HHeJ_G0033644.1 mouse_genomes_project 8 95240930 95278321 + MGP_C3HHeJ_P0089596 Slc12a3 protein_coding protein_coding MGP_C3HHeJ_T0005283.1 MGP_C3HHeJ_G0004470.1 mouse_genomes_project 8 46210164 46221537 - 4930579M01Rik antisense antisense MGP_C3HHeJ_T0090568.1 MGP_C3HHeJ_G0033965.1 mouse_genomes_project 8 127477231 127484645 - MGP_C3HHeJ_P0090568 Exoc8 protein_coding protein_coding MGP_C3HHeJ_T0088113.1 MGP_C3HHeJ_G0033188.1 mouse_genomes_project 8 25216884 25221011 + MGP_C3HHeJ_P0088113 Zfp703 protein_coding protein_coding MGP_C3HHeJ_T0088114.1 MGP_C3HHeJ_G0033188.1 mouse_genomes_project 8 25216884 25221011 + MGP_C3HHeJ_P0088114 Zfp703 protein_coding protein_coding MGP_C3HHeJ_T0005249.1 MGP_C3HHeJ_G0004444.1 mouse_genomes_project 8 181808 182746 + Gm16180 antisense antisense MGP_C3HHeJ_T0010854.1 MGP_C3HHeJ_G0008987.1 mouse_genomes_project 8 5916975 5917045 - Mir7654 miRNA miRNA MGP_C3HHeJ_T0005289.1 MGP_C3HHeJ_G0004475.1 mouse_genomes_project 8 61530990 61609248 + 4930512H18Rik antisense antisense MGP_C3HHeJ_T0090173.1 MGP_C3HHeJ_G0033852.1 mouse_genomes_project 8 119253899 119271702 + MGP_C3HHeJ_P0090173 Atmin protein_coding protein_coding MGP_C3HHeJ_T0099669.1 MGP_C3HHeJ_G0037863.1 mouse_genomes_project 8 125555671 125555778 - Gm24445 snRNA snRNA MGP_C3HHeJ_T0088859.1 MGP_C3HHeJ_G0033416.1 mouse_genomes_project 8 70783580 70798851 - MGP_C3HHeJ_P0088859 Mast3 protein_coding protein_coding MGP_C3HHeJ_T0089888.1 MGP_C3HHeJ_G0033757.1 mouse_genomes_project 8 107714978 107720878 - MGP_C3HHeJ_P0089888 Dpep3 protein_coding protein_coding MGP_C3HHeJ_T0010882.1 MGP_C3HHeJ_G0009015.1 mouse_genomes_project 8 70907256 70907319 - Mir7067 miRNA miRNA MGP_C3HHeJ_T0100905.1 MGP_C3HHeJ_G0039099.1 mouse_genomes_project 8 67133898 67134048 - Gm24677 snoRNA snoRNA MGP_C3HHeJ_T0088007.1 MGP_C3HHeJ_G0033162.1 mouse_genomes_project 8 22722721 22791820 - MGP_C3HHeJ_P0088007 Adam18 protein_coding protein_coding MGP_C3HHeJ_T0088008.1 MGP_C3HHeJ_G0033162.1 mouse_genomes_project 8 22722721 22791820 - MGP_C3HHeJ_P0088008 Adam18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088009.1 MGP_C3HHeJ_G0033162.1 mouse_genomes_project 8 22722725 22748189 - Adam18 protein_coding processed_transcript MGP_C3HHeJ_T0090250.1 MGP_C3HHeJ_G0033882.1 mouse_genomes_project 8 122520637 122540262 - MGP_C3HHeJ_P0090250 Zdhhc7 protein_coding protein_coding MGP_C3HHeJ_T0090251.1 MGP_C3HHeJ_G0033882.1 mouse_genomes_project 8 122521945 122526329 - Zdhhc7 protein_coding retained_intron MGP_C3HHeJ_T0090252.1 MGP_C3HHeJ_G0033882.1 mouse_genomes_project 8 122524715 122527569 - Zdhhc7 protein_coding retained_intron MGP_C3HHeJ_T0090253.1 MGP_C3HHeJ_G0033882.1 mouse_genomes_project 8 122524905 122527762 - Zdhhc7 protein_coding retained_intron MGP_C3HHeJ_T0090254.1 MGP_C3HHeJ_G0033882.1 mouse_genomes_project 8 122531756 122539852 - Zdhhc7 protein_coding processed_transcript MGP_C3HHeJ_T0087558.1 MGP_C3HHeJ_G0033005.1 mouse_genomes_project 8 534703 565500 + MGP_C3HHeJ_P0087558 Camsap3 protein_coding protein_coding MGP_C3HHeJ_T0087559.1 MGP_C3HHeJ_G0033005.1 mouse_genomes_project 8 534703 565500 + MGP_C3HHeJ_P0087559 Camsap3 protein_coding protein_coding MGP_C3HHeJ_T0087560.1 MGP_C3HHeJ_G0033005.1 mouse_genomes_project 8 535006 565475 + MGP_C3HHeJ_P0087560 Camsap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089050.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75238344 75283802 + MGP_C3HHeJ_P0089050 Hmgxb4 protein_coding protein_coding MGP_C3HHeJ_T0089051.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75238667 75244787 + Hmgxb4 protein_coding processed_transcript MGP_C3HHeJ_T0089052.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75238667 75283808 + MGP_C3HHeJ_P0089052 Hmgxb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089053.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75238679 75244209 + Hmgxb4 protein_coding processed_transcript MGP_C3HHeJ_T0089054.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75238700 75246190 + Hmgxb4 protein_coding retained_intron MGP_C3HHeJ_T0089055.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75268067 75283743 + MGP_C3HHeJ_P0089055 Hmgxb4 protein_coding protein_coding MGP_C3HHeJ_T0089056.1 MGP_C3HHeJ_G0033478.1 mouse_genomes_project 8 75274700 75275922 + Hmgxb4 protein_coding retained_intron MGP_C3HHeJ_T0090019.1 MGP_C3HHeJ_G0033803.1 mouse_genomes_project 8 112020742 112032571 + MGP_C3HHeJ_P0090019 Zfp612 protein_coding protein_coding MGP_C3HHeJ_T0089109.1 MGP_C3HHeJ_G0033497.1 mouse_genomes_project 8 79745598 79807380 - MGP_C3HHeJ_P0089109 Smad1 protein_coding protein_coding MGP_C3HHeJ_T0089110.1 MGP_C3HHeJ_G0033497.1 mouse_genomes_project 8 79748779 79807380 - MGP_C3HHeJ_P0089110 Smad1 protein_coding protein_coding MGP_C3HHeJ_T0089111.1 MGP_C3HHeJ_G0033497.1 mouse_genomes_project 8 79762554 79807380 - MGP_C3HHeJ_P0089111 Smad1 protein_coding protein_coding MGP_C3HHeJ_T0090122.1 MGP_C3HHeJ_G0033834.1 mouse_genomes_project 8 114013072 114034874 - MGP_C3HHeJ_P0090122 Tmem231 protein_coding protein_coding MGP_C3HHeJ_T0090582.1 MGP_C3HHeJ_G0033971.1 mouse_genomes_project 8 128294613 128298155 + MGP_C3HHeJ_P0090582 Map10 protein_coding protein_coding MGP_C3HHeJ_T0090191.1 MGP_C3HHeJ_G0033861.1 mouse_genomes_project 8 120061772 120123959 + MGP_C3HHeJ_P0090191 Hsd17b2 protein_coding protein_coding MGP_C3HHeJ_T0088499.1 MGP_C3HHeJ_G0033317.1 mouse_genomes_project 8 60153639 60193463 + MGP_C3HHeJ_P0088499 Aadat protein_coding protein_coding MGP_C3HHeJ_T0089227.1 MGP_C3HHeJ_G0033539.1 mouse_genomes_project 8 84627864 84658197 + MGP_C3HHeJ_P0089227 Rfx1 protein_coding protein_coding MGP_C3HHeJ_T0009029.1 MGP_C3HHeJ_G0007255.1 mouse_genomes_project 8 72367748 72371184 - Gm26586 lincRNA lincRNA MGP_C3HHeJ_T0088129.1 MGP_C3HHeJ_G0033196.1 mouse_genomes_project 8 25512946 25528353 + MGP_C3HHeJ_P0088129 Eif4ebp1 protein_coding protein_coding MGP_C3HHeJ_T0090640.1 MGP_C3HHeJ_G0033987.1 mouse_genomes_project 8 131742807 131842636 - MGP_C3HHeJ_P0090640 Ccdc7a protein_coding protein_coding MGP_C3HHeJ_T0010919.1 MGP_C3HHeJ_G0009052.1 mouse_genomes_project 8 108910563 108910645 - Mir7075 miRNA miRNA MGP_C3HHeJ_T0089412.1 MGP_C3HHeJ_G0033585.1 mouse_genomes_project 8 85867957 85906898 - MGP_C3HHeJ_P0089412 Vps35 protein_coding protein_coding MGP_C3HHeJ_T0089119.1 MGP_C3HHeJ_G0033500.1 mouse_genomes_project 8 80145426 80210754 + MGP_C3HHeJ_P0089119 Anapc10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010885.1 MGP_C3HHeJ_G0009018.1 mouse_genomes_project 8 72714550 72714624 - Mir7068 miRNA miRNA MGP_C3HHeJ_T0089829.1 MGP_C3HHeJ_G0033730.1 mouse_genomes_project 8 107099109 107129619 - MGP_C3HHeJ_P0089829 Kctd19 protein_coding protein_coding MGP_C3HHeJ_T0089830.1 MGP_C3HHeJ_G0033730.1 mouse_genomes_project 8 107099109 107129619 - MGP_C3HHeJ_P0089830 Kctd19 protein_coding protein_coding MGP_C3HHeJ_T0089831.1 MGP_C3HHeJ_G0033730.1 mouse_genomes_project 8 107099244 107101675 - MGP_C3HHeJ_P0089831 Kctd19 protein_coding protein_coding MGP_C3HHeJ_T0089832.1 MGP_C3HHeJ_G0033730.1 mouse_genomes_project 8 107110083 107129573 - MGP_C3HHeJ_P0089832 Kctd19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087833.1 MGP_C3HHeJ_G0033088.1 mouse_genomes_project 8 11578838 11580968 + MGP_C3HHeJ_P0087833 protein_coding protein_coding MGP_C3HHeJ_T0087802.1 MGP_C3HHeJ_G0033076.1 mouse_genomes_project 8 10921859 10950968 - MGP_C3HHeJ_P0087802 Gas6 protein_coding protein_coding MGP_C3HHeJ_T0005330.1 MGP_C3HHeJ_G0004510.1 mouse_genomes_project 8 124485159 124486131 - Gm27011 antisense antisense MGP_C3HHeJ_T0009031.1 MGP_C3HHeJ_G0007257.1 mouse_genomes_project 8 74831679 75070832 - lincRNA lincRNA MGP_C3HHeJ_T0009032.1 MGP_C3HHeJ_G0007257.1 mouse_genomes_project 8 75064034 75070805 - lincRNA lincRNA MGP_C3HHeJ_T0089655.1 MGP_C3HHeJ_G0033662.1 mouse_genomes_project 8 95952997 95982234 + MGP_C3HHeJ_P0089655 Adgrg3 protein_coding protein_coding MGP_C3HHeJ_T0088866.1 MGP_C3HHeJ_G0033421.1 mouse_genomes_project 8 70878204 70884183 - MGP_C3HHeJ_P0088866 Ccdc124 protein_coding protein_coding MGP_C3HHeJ_T0090116.1 MGP_C3HHeJ_G0033829.1 mouse_genomes_project 8 113775929 113781796 - MGP_C3HHeJ_P0090116 Ctrb1 protein_coding protein_coding MGP_C3HHeJ_T0088060.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23770227 23849059 + MGP_C3HHeJ_P0088060 Whsc1l1 protein_coding protein_coding MGP_C3HHeJ_T0088061.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23770910 23846751 + Whsc1l1 protein_coding retained_intron MGP_C3HHeJ_T0088062.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23770910 23892230 + MGP_C3HHeJ_P0088062 Whsc1l1 protein_coding protein_coding MGP_C3HHeJ_T0088063.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23770910 23887541 + MGP_C3HHeJ_P0088063 Whsc1l1 protein_coding protein_coding MGP_C3HHeJ_T0088064.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23770910 23849817 + MGP_C3HHeJ_P0088064 Whsc1l1 protein_coding protein_coding MGP_C3HHeJ_T0088065.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23770945 23835443 + Whsc1l1 protein_coding retained_intron MGP_C3HHeJ_T0088066.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23811055 23892230 + MGP_C3HHeJ_P0088066 Whsc1l1 protein_coding protein_coding MGP_C3HHeJ_T0088067.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23846279 23849795 + Whsc1l1 protein_coding retained_intron MGP_C3HHeJ_T0088068.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23866526 23887541 + MGP_C3HHeJ_P0088068 Whsc1l1 protein_coding protein_coding MGP_C3HHeJ_T0088069.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23870921 23881268 + Whsc1l1 protein_coding retained_intron MGP_C3HHeJ_T0088070.1 MGP_C3HHeJ_G0033173.1 mouse_genomes_project 8 23872351 23873378 + Whsc1l1 protein_coding retained_intron MGP_C3HHeJ_T0087620.1 MGP_C3HHeJ_G0033021.1 mouse_genomes_project 8 1189134 1196434 - MGP_C3HHeJ_P0087620 Prr36 protein_coding protein_coding MGP_C3HHeJ_T0087621.1 MGP_C3HHeJ_G0033021.1 mouse_genomes_project 8 1194170 1196034 - MGP_C3HHeJ_P0087621 Prr36 protein_coding protein_coding MGP_C3HHeJ_T0087622.1 MGP_C3HHeJ_G0033021.1 mouse_genomes_project 8 1195093 1196274 - MGP_C3HHeJ_P0087622 Prr36 protein_coding protein_coding MGP_C3HHeJ_T0087623.1 MGP_C3HHeJ_G0033021.1 mouse_genomes_project 8 1195529 1196581 - MGP_C3HHeJ_P0087623 Prr36 protein_coding protein_coding MGP_C3HHeJ_T0090383.1 MGP_C3HHeJ_G0033909.1 mouse_genomes_project 8 124966394 124974561 - MGP_C3HHeJ_P0090383 Cyba protein_coding protein_coding MGP_C3HHeJ_T0010887.1 MGP_C3HHeJ_G0009020.1 mouse_genomes_project 8 73237530 73237610 + Mir28b miRNA miRNA MGP_C3HHeJ_T0088789.1 MGP_C3HHeJ_G0033395.1 mouse_genomes_project 8 70455054 70458569 - MGP_C3HHeJ_P0088789 Tmem59l protein_coding protein_coding MGP_C3HHeJ_T0015742.1 MGP_C3HHeJ_G0013846.1 mouse_genomes_project 8 4176433 4177272 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089232.1 MGP_C3HHeJ_G0033542.1 mouse_genomes_project 8 84699188 84715318 - MGP_C3HHeJ_P0089232 Cc2d1a protein_coding protein_coding MGP_C3HHeJ_T0089233.1 MGP_C3HHeJ_G0033542.1 mouse_genomes_project 8 84699188 84715389 - MGP_C3HHeJ_P0089233 Cc2d1a protein_coding protein_coding MGP_C3HHeJ_T0089234.1 MGP_C3HHeJ_G0033542.1 mouse_genomes_project 8 84699197 84704321 - Cc2d1a protein_coding retained_intron MGP_C3HHeJ_T0089235.1 MGP_C3HHeJ_G0033542.1 mouse_genomes_project 8 84713907 84715350 - Cc2d1a protein_coding processed_transcript MGP_C3HHeJ_T0005279.1 MGP_C3HHeJ_G0004466.1 mouse_genomes_project 8 39905287 39920045 + Gm16193 antisense antisense MGP_C3HHeJ_T0088281.1 MGP_C3HHeJ_G0033250.1 mouse_genomes_project 8 40205918 40240812 - MGP_C3HHeJ_P0088281 Asah1 protein_coding protein_coding MGP_C3HHeJ_T0088282.1 MGP_C3HHeJ_G0033250.1 mouse_genomes_project 8 40206380 40216635 - Asah1 protein_coding retained_intron MGP_C3HHeJ_T0088283.1 MGP_C3HHeJ_G0033250.1 mouse_genomes_project 8 40207046 40209549 - Asah1 protein_coding retained_intron MGP_C3HHeJ_T0088284.1 MGP_C3HHeJ_G0033250.1 mouse_genomes_project 8 40212777 40240674 - MGP_C3HHeJ_P0088284 Asah1 protein_coding protein_coding MGP_C3HHeJ_T0088285.1 MGP_C3HHeJ_G0033250.1 mouse_genomes_project 8 40220605 40240812 - MGP_C3HHeJ_P0088285 Asah1 protein_coding protein_coding MGP_C3HHeJ_T0005265.1 MGP_C3HHeJ_G0004456.1 mouse_genomes_project 8 12537339 12541151 - 5830468F06Rik antisense antisense MGP_C3HHeJ_T0009061.1 MGP_C3HHeJ_G0007278.1 mouse_genomes_project 8 88128348 88144533 - Gm27016 lincRNA lincRNA MGP_C3HHeJ_T0090172.1 MGP_C3HHeJ_G0033851.1 mouse_genomes_project 8 119232082 119251424 + MGP_C3HHeJ_P0090172 Cenpn protein_coding unknown_likely_coding MGP_C3HHeJ_T0090273.1 MGP_C3HHeJ_G0033886.1 mouse_genomes_project 8 123052228 123063132 - Gins2 protein_coding retained_intron MGP_C3HHeJ_T0090274.1 MGP_C3HHeJ_G0033886.1 mouse_genomes_project 8 123052228 123063456 - MGP_C3HHeJ_P0090274 Gins2 protein_coding protein_coding MGP_C3HHeJ_T0090275.1 MGP_C3HHeJ_G0033886.1 mouse_genomes_project 8 123055139 123060360 - Gins2 protein_coding retained_intron MGP_C3HHeJ_T0090276.1 MGP_C3HHeJ_G0033886.1 mouse_genomes_project 8 123055750 123063186 - Gins2 protein_coding processed_transcript MGP_C3HHeJ_T0015809.1 MGP_C3HHeJ_G0013913.1 mouse_genomes_project 8 107387496 107387889 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015787.1 MGP_C3HHeJ_G0013891.1 mouse_genomes_project 8 80550654 80554022 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098192.1 MGP_C3HHeJ_G0036404.1 mouse_genomes_project 8 47141963 47142076 + n-R5s97 rRNA rRNA MGP_C3HHeJ_T0015810.1 MGP_C3HHeJ_G0013914.1 mouse_genomes_project 8 118782238 118783310 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009036.1 MGP_C3HHeJ_G0007261.1 mouse_genomes_project 8 81492785 81527433 + Gm9725 lincRNA lincRNA MGP_C3HHeJ_T0088650.1 MGP_C3HHeJ_G0033358.1 mouse_genomes_project 8 69279586 69279973 - MGP_C3HHeJ_P0088650 protein_coding protein_coding MGP_C3HHeJ_T0099626.1 MGP_C3HHeJ_G0037820.1 mouse_genomes_project 8 23063675 23063778 + Gm23898 snRNA snRNA MGP_C3HHeJ_T0009117.1 MGP_C3HHeJ_G0007317.1 mouse_genomes_project 8 124810338 124813434 + Gm22 lincRNA lincRNA MGP_C3HHeJ_T0009118.1 MGP_C3HHeJ_G0007317.1 mouse_genomes_project 8 124810338 124813430 + Gm22 lincRNA lincRNA MGP_C3HHeJ_T0005270.1 MGP_C3HHeJ_G0004460.1 mouse_genomes_project 8 20855589 20859370 + 1700041G16Rik antisense antisense MGP_C3HHeJ_T0005271.1 MGP_C3HHeJ_G0004460.1 mouse_genomes_project 8 20858111 20858569 + 1700041G16Rik antisense antisense MGP_C3HHeJ_T0089083.1 MGP_C3HHeJ_G0033488.1 mouse_genomes_project 8 77985949 78053571 - MGP_C3HHeJ_P0089083 Ednra protein_coding protein_coding MGP_C3HHeJ_T0089084.1 MGP_C3HHeJ_G0033488.1 mouse_genomes_project 8 77993962 78053599 - Ednra protein_coding retained_intron MGP_C3HHeJ_T0088237.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39307579 39327464 - MGP_C3HHeJ_P0088237 Cnot7 protein_coding protein_coding MGP_C3HHeJ_T0088238.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39307581 39331559 - MGP_C3HHeJ_P0088238 Cnot7 protein_coding protein_coding MGP_C3HHeJ_T0088239.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39307582 39327428 - Cnot7 protein_coding retained_intron MGP_C3HHeJ_T0088240.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39307586 39327428 - MGP_C3HHeJ_P0088240 Cnot7 protein_coding protein_coding MGP_C3HHeJ_T0088241.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39308076 39327013 - MGP_C3HHeJ_P0088241 Cnot7 protein_coding protein_coding MGP_C3HHeJ_T0088242.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39309054 39316822 - Cnot7 protein_coding processed_transcript MGP_C3HHeJ_T0088243.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39310671 39323412 - Cnot7 protein_coding retained_intron MGP_C3HHeJ_T0088245.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39316482 39323329 - Cnot7 protein_coding processed_transcript MGP_C3HHeJ_T0088246.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39323061 39327432 - Cnot7 protein_coding processed_transcript MGP_C3HHeJ_T0088247.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39325730 39331547 - Cnot7 protein_coding processed_transcript MGP_C3HHeJ_T0088248.1 MGP_C3HHeJ_G0033241.1 mouse_genomes_project 8 39325810 39327013 - Cnot7 protein_coding processed_transcript MGP_C3HHeJ_T0088388.1 MGP_C3HHeJ_G0033278.1 mouse_genomes_project 8 45742740 45784240 - MGP_C3HHeJ_P0088388 Primpol protein_coding protein_coding MGP_C3HHeJ_T0088389.1 MGP_C3HHeJ_G0033278.1 mouse_genomes_project 8 45743323 45784240 - Primpol protein_coding retained_intron MGP_C3HHeJ_T0088390.1 MGP_C3HHeJ_G0033278.1 mouse_genomes_project 8 45753786 45759728 - Primpol protein_coding processed_transcript MGP_C3HHeJ_T0088391.1 MGP_C3HHeJ_G0033278.1 mouse_genomes_project 8 45772194 45780055 - MGP_C3HHeJ_P0088391 Primpol protein_coding protein_coding MGP_C3HHeJ_T0088392.1 MGP_C3HHeJ_G0033278.1 mouse_genomes_project 8 45777817 45784252 - Primpol protein_coding retained_intron MGP_C3HHeJ_T0088557.1 MGP_C3HHeJ_G0033328.1 mouse_genomes_project 8 63667098 63690468 - MGP_C3HHeJ_P0088557 Sgol2b protein_coding protein_coding MGP_C3HHeJ_T0087589.1 MGP_C3HHeJ_G0033010.1 mouse_genomes_project 8 614831 619320 + MGP_C3HHeJ_P0087589 Retn protein_coding protein_coding MGP_C3HHeJ_T0087590.1 MGP_C3HHeJ_G0033010.1 mouse_genomes_project 8 614831 617158 + MGP_C3HHeJ_P0087590 Retn protein_coding protein_coding MGP_C3HHeJ_T0087849.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12427085 12523336 + MGP_C3HHeJ_P0087849 Arhgef10 protein_coding protein_coding MGP_C3HHeJ_T0087850.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12427139 12445485 + Arhgef10 protein_coding retained_intron MGP_C3HHeJ_T0087851.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12427146 12482730 + MGP_C3HHeJ_P0087851 Arhgef10 protein_coding protein_coding MGP_C3HHeJ_T0087852.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12427160 12523336 + MGP_C3HHeJ_P0087852 Arhgef10 protein_coding protein_coding MGP_C3HHeJ_T0087853.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12462242 12523333 + MGP_C3HHeJ_P0087853 Arhgef10 protein_coding protein_coding MGP_C3HHeJ_T0087854.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12512811 12513572 + Arhgef10 protein_coding processed_transcript MGP_C3HHeJ_T0087855.1 MGP_C3HHeJ_G0033092.1 mouse_genomes_project 8 12518455 12523325 + Arhgef10 protein_coding processed_transcript MGP_C3HHeJ_T0015784.1 MGP_C3HHeJ_G0013888.1 mouse_genomes_project 8 79255334 79256366 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089822.1 MGP_C3HHeJ_G0033728.1 mouse_genomes_project 8 107062113 107085017 + MGP_C3HHeJ_P0089822 Slc9a5 protein_coding protein_coding MGP_C3HHeJ_T0088199.1 MGP_C3HHeJ_G0033227.1 mouse_genomes_project 8 34216991 34309103 + MGP_C3HHeJ_P0088199 Mfhas1 protein_coding protein_coding MGP_C3HHeJ_T0088200.1 MGP_C3HHeJ_G0033227.1 mouse_genomes_project 8 34237697 34306691 + Mfhas1 protein_coding processed_transcript MGP_C3HHeJ_T0089837.1 MGP_C3HHeJ_G0033732.1 mouse_genomes_project 8 107184821 107188855 - MGP_C3HHeJ_P0089837 Tppp3 protein_coding protein_coding MGP_C3HHeJ_T0089838.1 MGP_C3HHeJ_G0033732.1 mouse_genomes_project 8 107184997 107186739 - MGP_C3HHeJ_P0089838 Tppp3 protein_coding protein_coding MGP_C3HHeJ_T0089839.1 MGP_C3HHeJ_G0033732.1 mouse_genomes_project 8 107185011 107185991 - MGP_C3HHeJ_P0089839 Tppp3 protein_coding protein_coding MGP_C3HHeJ_T0005278.1 MGP_C3HHeJ_G0004465.1 mouse_genomes_project 8 39890502 39892780 + Gm16192 antisense antisense MGP_C3HHeJ_T0089473.1 MGP_C3HHeJ_G0033603.1 mouse_genomes_project 8 88881360 88945164 + MGP_C3HHeJ_P0089473 Papd5 protein_coding protein_coding MGP_C3HHeJ_T0089474.1 MGP_C3HHeJ_G0033603.1 mouse_genomes_project 8 88881360 88945170 + MGP_C3HHeJ_P0089474 Papd5 protein_coding protein_coding MGP_C3HHeJ_T0089475.1 MGP_C3HHeJ_G0033603.1 mouse_genomes_project 8 88881361 88945170 + MGP_C3HHeJ_P0089475 Papd5 protein_coding protein_coding MGP_C3HHeJ_T0089476.1 MGP_C3HHeJ_G0033603.1 mouse_genomes_project 8 88930250 88934444 + Papd5 protein_coding retained_intron MGP_C3HHeJ_T0089477.1 MGP_C3HHeJ_G0033603.1 mouse_genomes_project 8 88937189 88942599 + MGP_C3HHeJ_P0089477 Papd5 protein_coding protein_coding MGP_C3HHeJ_T0089911.1 MGP_C3HHeJ_G0033763.1 mouse_genomes_project 8 107906655 107921525 + MGP_C3HHeJ_P0089911 Pla2g15 protein_coding protein_coding MGP_C3HHeJ_T0089342.1 MGP_C3HHeJ_G0033566.1 mouse_genomes_project 8 85525389 85551660 - MGP_C3HHeJ_P0089342 Mast1 protein_coding protein_coding MGP_C3HHeJ_T0089343.1 MGP_C3HHeJ_G0033566.1 mouse_genomes_project 8 85525396 85551654 - MGP_C3HHeJ_P0089343 Mast1 protein_coding protein_coding MGP_C3HHeJ_T0089344.1 MGP_C3HHeJ_G0033566.1 mouse_genomes_project 8 85525399 85537046 - Mast1 protein_coding retained_intron MGP_C3HHeJ_T0089346.1 MGP_C3HHeJ_G0033566.1 mouse_genomes_project 8 85534835 85539475 - Mast1 protein_coding retained_intron MGP_C3HHeJ_T0089347.1 MGP_C3HHeJ_G0033566.1 mouse_genomes_project 8 85536660 85542409 - Mast1 protein_coding retained_intron MGP_C3HHeJ_T0089348.1 MGP_C3HHeJ_G0033566.1 mouse_genomes_project 8 85549221 85551645 - Mast1 protein_coding retained_intron MGP_C3HHeJ_T0015782.1 MGP_C3HHeJ_G0013886.1 mouse_genomes_project 8 76571704 76572712 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090208.1 MGP_C3HHeJ_G0033867.1 mouse_genomes_project 8 121865725 121891649 + MGP_C3HHeJ_P0090208 Necab2 protein_coding protein_coding MGP_C3HHeJ_T0090209.1 MGP_C3HHeJ_G0033867.1 mouse_genomes_project 8 121865767 121891420 + Necab2 protein_coding processed_transcript MGP_C3HHeJ_T0090210.1 MGP_C3HHeJ_G0033867.1 mouse_genomes_project 8 121871446 121889954 + MGP_C3HHeJ_P0090210 Necab2 protein_coding protein_coding MGP_C3HHeJ_T0010897.1 MGP_C3HHeJ_G0009030.1 mouse_genomes_project 8 84779110 84779197 + Mir27a miRNA miRNA MGP_C3HHeJ_T0087604.1 MGP_C3HHeJ_G0033019.1 mouse_genomes_project 8 901362 907191 - MGP_C3HHeJ_P0087604 Cd209c protein_coding protein_coding MGP_C3HHeJ_T0087605.1 MGP_C3HHeJ_G0033019.1 mouse_genomes_project 8 901434 914100 - MGP_C3HHeJ_P0087605 Cd209c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089505.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91867019 91922019 + MGP_C3HHeJ_P0089505 Rbl2 protein_coding protein_coding MGP_C3HHeJ_T0089506.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91867056 91876922 + Rbl2 protein_coding retained_intron MGP_C3HHeJ_T0089507.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91904072 91913279 + Rbl2 protein_coding retained_intron MGP_C3HHeJ_T0089508.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91904109 91912224 + Rbl2 protein_coding processed_transcript MGP_C3HHeJ_T0089510.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91910417 91914001 + Rbl2 protein_coding retained_intron MGP_C3HHeJ_T0089511.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91911828 91913941 + Rbl2 protein_coding retained_intron MGP_C3HHeJ_T0089512.1 MGP_C3HHeJ_G0033614.1 mouse_genomes_project 8 91913303 91914262 + Rbl2 protein_coding retained_intron MGP_C3HHeJ_T0089677.1 MGP_C3HHeJ_G0033669.1 mouse_genomes_project 8 96283432 96298903 + MGP_C3HHeJ_P0089677 Usb1 protein_coding protein_coding MGP_C3HHeJ_T0089678.1 MGP_C3HHeJ_G0033669.1 mouse_genomes_project 8 96284013 96295661 + Usb1 protein_coding retained_intron MGP_C3HHeJ_T0089679.1 MGP_C3HHeJ_G0033669.1 mouse_genomes_project 8 96296540 96298220 + Usb1 protein_coding retained_intron MGP_C3HHeJ_T0088118.1 MGP_C3HHeJ_G0033191.1 mouse_genomes_project 8 25326540 25367852 + MGP_C3HHeJ_P0088118 Adgra2 protein_coding protein_coding MGP_C3HHeJ_T0088119.1 MGP_C3HHeJ_G0033191.1 mouse_genomes_project 8 25326555 25367853 + MGP_C3HHeJ_P0088119 Adgra2 protein_coding protein_coding MGP_C3HHeJ_T0088120.1 MGP_C3HHeJ_G0033191.1 mouse_genomes_project 8 25356896 25361594 + MGP_C3HHeJ_P0088120 Adgra2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088121.1 MGP_C3HHeJ_G0033191.1 mouse_genomes_project 8 25360128 25366040 + MGP_C3HHeJ_P0088121 Adgra2 protein_coding protein_coding MGP_C3HHeJ_T0088938.1 MGP_C3HHeJ_G0033440.1 mouse_genomes_project 8 71625754 71628885 - MGP_C3HHeJ_P0088938 Bst2 protein_coding protein_coding MGP_C3HHeJ_T0010934.1 MGP_C3HHeJ_G0009067.1 mouse_genomes_project 8 123596809 123596907 - Gm27530 miRNA miRNA MGP_C3HHeJ_T0088482.1 MGP_C3HHeJ_G0033311.1 mouse_genomes_project 8 57081103 57086257 - MGP_C3HHeJ_P0088482 Sap30 protein_coding protein_coding MGP_C3HHeJ_T0100895.1 MGP_C3HHeJ_G0039089.1 mouse_genomes_project 8 48250681 48250813 - Gm25830 snoRNA snoRNA MGP_C3HHeJ_T0089823.1 MGP_C3HHeJ_G0033729.1 mouse_genomes_project 8 107084787 107098544 + MGP_C3HHeJ_P0089823 Plekhg4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089824.1 MGP_C3HHeJ_G0033729.1 mouse_genomes_project 8 107089576 107091863 + MGP_C3HHeJ_P0089824 Plekhg4 protein_coding protein_coding MGP_C3HHeJ_T0089825.1 MGP_C3HHeJ_G0033729.1 mouse_genomes_project 8 107091206 107099162 + MGP_C3HHeJ_P0089825 Plekhg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089826.1 MGP_C3HHeJ_G0033729.1 mouse_genomes_project 8 107091683 107098544 + MGP_C3HHeJ_P0089826 Plekhg4 protein_coding protein_coding MGP_C3HHeJ_T0089827.1 MGP_C3HHeJ_G0033729.1 mouse_genomes_project 8 107091683 107099165 + MGP_C3HHeJ_P0089827 Plekhg4 protein_coding protein_coding MGP_C3HHeJ_T0089828.1 MGP_C3HHeJ_G0033729.1 mouse_genomes_project 8 107096796 107099158 + Plekhg4 protein_coding retained_intron MGP_C3HHeJ_T0087730.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10175816 10286659 + MGP_C3HHeJ_P0087730 Atp11a protein_coding protein_coding MGP_C3HHeJ_T0087731.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10175818 10286659 + MGP_C3HHeJ_P0087731 Atp11a protein_coding protein_coding MGP_C3HHeJ_T0087732.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10175871 10277651 + MGP_C3HHeJ_P0087732 Atp11a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087733.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10229489 10232457 + Atp11a protein_coding retained_intron MGP_C3HHeJ_T0087734.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10240475 10246613 + Atp11a protein_coding retained_intron MGP_C3HHeJ_T0087735.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10253237 10286598 + MGP_C3HHeJ_P0087735 Atp11a protein_coding protein_coding MGP_C3HHeJ_T0087736.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10265927 10275201 + MGP_C3HHeJ_P0087736 Atp11a protein_coding protein_coding MGP_C3HHeJ_T0087737.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10267911 10269795 + Atp11a protein_coding processed_transcript MGP_C3HHeJ_T0087738.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10274890 10280136 + MGP_C3HHeJ_P0087738 Atp11a protein_coding protein_coding MGP_C3HHeJ_T0087739.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10275892 10280133 + MGP_C3HHeJ_P0087739 Atp11a protein_coding protein_coding MGP_C3HHeJ_T0087740.1 MGP_C3HHeJ_G0033060.1 mouse_genomes_project 8 10279495 10283501 + Atp11a protein_coding retained_intron MGP_C3HHeJ_T0018228.1 MGP_C3HHeJ_G0015471.1 mouse_genomes_project 8 39868239 39874949 + B430010I23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018229.1 MGP_C3HHeJ_G0015471.1 mouse_genomes_project 8 39868509 39871309 + B430010I23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100906.1 MGP_C3HHeJ_G0039100.1 mouse_genomes_project 8 67876087 67876218 + Gm22018 snoRNA snoRNA MGP_C3HHeJ_T0087951.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20703202 20752305 - MGP_C3HHeJ_P0087951 Ikbkb protein_coding protein_coding MGP_C3HHeJ_T0087952.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20703203 20752267 - MGP_C3HHeJ_P0087952 Ikbkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087953.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20703203 20752261 - MGP_C3HHeJ_P0087953 Ikbkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087954.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20703758 20752316 - MGP_C3HHeJ_P0087954 Ikbkb protein_coding protein_coding MGP_C3HHeJ_T0087955.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20704098 20705473 - MGP_C3HHeJ_P0087955 Ikbkb protein_coding protein_coding MGP_C3HHeJ_T0087956.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20704347 20752305 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087957.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20712002 20713019 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087958.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20719976 20752267 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087959.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20725207 20752266 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087960.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20726752 20738887 - MGP_C3HHeJ_P0087960 Ikbkb protein_coding protein_coding MGP_C3HHeJ_T0087961.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20733944 20752286 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087962.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20736661 20752301 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087963.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20747726 20752290 - Ikbkb protein_coding retained_intron MGP_C3HHeJ_T0087964.1 MGP_C3HHeJ_G0033147.1 mouse_genomes_project 8 20748170 20752252 - Ikbkb protein_coding processed_transcript MGP_C3HHeJ_T0088071.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892623 23897450 + MGP_C3HHeJ_P0088071 Plpp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088072.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892623 23897450 + MGP_C3HHeJ_P0088072 Plpp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088073.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892626 23897450 + Plpp5 protein_coding retained_intron MGP_C3HHeJ_T0088074.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892626 23897450 + MGP_C3HHeJ_P0088074 Plpp5 protein_coding protein_coding MGP_C3HHeJ_T0088075.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892626 23897450 + MGP_C3HHeJ_P0088075 Plpp5 protein_coding protein_coding MGP_C3HHeJ_T0088076.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892662 23894714 + Plpp5 protein_coding retained_intron MGP_C3HHeJ_T0088077.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23892944 23897446 + Plpp5 protein_coding retained_intron MGP_C3HHeJ_T0088078.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23893018 23897450 + Plpp5 protein_coding processed_transcript MGP_C3HHeJ_T0088079.1 MGP_C3HHeJ_G0033174.1 mouse_genomes_project 8 23895520 23897011 + Plpp5 protein_coding retained_intron MGP_C3HHeJ_T0090128.1 MGP_C3HHeJ_G0033837.1 mouse_genomes_project 8 114096675 114115436 - MGP_C3HHeJ_P0090128 Kars protein_coding protein_coding MGP_C3HHeJ_T0090129.1 MGP_C3HHeJ_G0033837.1 mouse_genomes_project 8 114096679 114115471 - MGP_C3HHeJ_P0090129 Kars protein_coding protein_coding MGP_C3HHeJ_T0090130.1 MGP_C3HHeJ_G0033837.1 mouse_genomes_project 8 114096679 114115414 - MGP_C3HHeJ_P0090130 Kars protein_coding protein_coding MGP_C3HHeJ_T0088676.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69770209 69820178 + MGP_C3HHeJ_P0088676 Pbx4 protein_coding protein_coding MGP_C3HHeJ_T0088677.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69770342 69805040 + Pbx4 protein_coding retained_intron MGP_C3HHeJ_T0088678.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69770355 69820178 + MGP_C3HHeJ_P0088678 Pbx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088679.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69770378 69818572 + MGP_C3HHeJ_P0088679 Pbx4 protein_coding protein_coding MGP_C3HHeJ_T0088680.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69770380 69820178 + MGP_C3HHeJ_P0088680 Pbx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088681.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69770408 69820178 + MGP_C3HHeJ_P0088681 Pbx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088682.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69789041 69811706 + Pbx4 protein_coding processed_transcript MGP_C3HHeJ_T0088683.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69812844 69818524 + Pbx4 protein_coding retained_intron MGP_C3HHeJ_T0088684.1 MGP_C3HHeJ_G0033368.1 mouse_genomes_project 8 69813043 69820178 + Pbx4 protein_coding retained_intron MGP_C3HHeJ_T0100898.1 MGP_C3HHeJ_G0039092.1 mouse_genomes_project 8 57151632 57151746 + Gm25379 snoRNA snoRNA MGP_C3HHeJ_T0087678.1 MGP_C3HHeJ_G0033040.1 mouse_genomes_project 8 7237641 7244419 - MGP_C3HHeJ_P0087678 Lig4 protein_coding protein_coding MGP_C3HHeJ_T0087679.1 MGP_C3HHeJ_G0033040.1 mouse_genomes_project 8 7238422 7245782 - MGP_C3HHeJ_P0087679 Lig4 protein_coding protein_coding MGP_C3HHeJ_T0087699.1 MGP_C3HHeJ_G0033049.1 mouse_genomes_project 8 8846854 8891201 - MGP_C3HHeJ_P0087699 Cars2 protein_coding protein_coding MGP_C3HHeJ_T0087700.1 MGP_C3HHeJ_G0033049.1 mouse_genomes_project 8 8846856 8891107 - MGP_C3HHeJ_P0087700 Cars2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087825.1 MGP_C3HHeJ_G0033085.1 mouse_genomes_project 8 11384523 11419704 + MGP_C3HHeJ_P0087825 Fbxo25 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087826.1 MGP_C3HHeJ_G0033085.1 mouse_genomes_project 8 11384532 11420573 + MGP_C3HHeJ_P0087826 Fbxo25 protein_coding protein_coding MGP_C3HHeJ_T0089952.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108883743 108911084 - MGP_C3HHeJ_P0089952 Terf2 protein_coding protein_coding MGP_C3HHeJ_T0089953.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108883745 108910729 - MGP_C3HHeJ_P0089953 Terf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089954.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108883745 108911084 - MGP_C3HHeJ_P0089954 Terf2 protein_coding protein_coding MGP_C3HHeJ_T0089955.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108884271 108911053 - MGP_C3HHeJ_P0089955 Terf2 protein_coding protein_coding MGP_C3HHeJ_T0089956.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108889860 108911086 - MGP_C3HHeJ_P0089956 Terf2 protein_coding protein_coding MGP_C3HHeJ_T0089957.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108890662 108894219 - Terf2 protein_coding retained_intron MGP_C3HHeJ_T0089958.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108893771 108895781 - Terf2 protein_coding retained_intron MGP_C3HHeJ_T0089959.1 MGP_C3HHeJ_G0033782.1 mouse_genomes_project 8 108893780 108897557 - Terf2 protein_coding retained_intron MGP_C3HHeJ_T0099651.1 MGP_C3HHeJ_G0037845.1 mouse_genomes_project 8 85935687 85935794 + Gm22336 snRNA snRNA MGP_C3HHeJ_T0099664.1 MGP_C3HHeJ_G0037858.1 mouse_genomes_project 8 115672186 115672348 - Gm24291 snRNA snRNA MGP_C3HHeJ_T0100896.1 MGP_C3HHeJ_G0039090.1 mouse_genomes_project 8 52482610 52482726 + Gm23666 snoRNA snoRNA MGP_C3HHeJ_T0100889.1 MGP_C3HHeJ_G0039083.1 mouse_genomes_project 8 37815315 37815447 - Gm23128 snoRNA snoRNA MGP_C3HHeJ_T0090278.1 MGP_C3HHeJ_G0033888.1 mouse_genomes_project 8 123086436 123150397 - MGP_C3HHeJ_P0090278 Gm27021 protein_coding protein_coding MGP_C3HHeJ_T0089063.1 MGP_C3HHeJ_G0033482.1 mouse_genomes_project 8 75475167 75485443 + MGP_C3HHeJ_P0089063 Rasd2 protein_coding protein_coding MGP_C3HHeJ_T0089064.1 MGP_C3HHeJ_G0033482.1 mouse_genomes_project 8 75475725 75483733 + MGP_C3HHeJ_P0089064 Rasd2 protein_coding protein_coding MGP_C3HHeJ_T0088197.1 MGP_C3HHeJ_G0033225.1 mouse_genomes_project 8 33997886 34012409 + MGP_C3HHeJ_P0088197 Ppp1r3b protein_coding protein_coding MGP_C3HHeJ_T0099642.1 MGP_C3HHeJ_G0037836.1 mouse_genomes_project 8 65810252 65810359 - Gm24205 snRNA snRNA MGP_C3HHeJ_T0009009.1 MGP_C3HHeJ_G0007236.1 mouse_genomes_project 8 32618135 32619725 + Gm26768 lincRNA lincRNA MGP_C3HHeJ_T0088227.1 MGP_C3HHeJ_G0033238.1 mouse_genomes_project 8 39089206 39097015 - MGP_C3HHeJ_P0088227 Fgf20 protein_coding protein_coding MGP_C3HHeJ_T0088228.1 MGP_C3HHeJ_G0033238.1 mouse_genomes_project 8 39089831 39126228 - MGP_C3HHeJ_P0088228 Fgf20 protein_coding protein_coding MGP_C3HHeJ_T0090598.1 MGP_C3HHeJ_G0033975.1 mouse_genomes_project 8 128631767 128667945 + MGP_C3HHeJ_P0090598 Kcnk1 protein_coding protein_coding MGP_C3HHeJ_T0088869.1 MGP_C3HHeJ_G0033424.1 mouse_genomes_project 8 70918435 70930647 + MGP_C3HHeJ_P0088869 Map1s protein_coding protein_coding MGP_C3HHeJ_T0099652.1 MGP_C3HHeJ_G0037846.1 mouse_genomes_project 8 86924825 86924923 + Gm24490 snRNA snRNA MGP_C3HHeJ_T0087902.1 MGP_C3HHeJ_G0033113.1 mouse_genomes_project 8 17225399 17228050 + MGP_C3HHeJ_P0087902 Defb7 protein_coding protein_coding MGP_C3HHeJ_T0005300.1 MGP_C3HHeJ_G0004484.1 mouse_genomes_project 8 80965538 80968170 - 4930505O20Rik antisense antisense MGP_C3HHeJ_T0099639.1 MGP_C3HHeJ_G0037833.1 mouse_genomes_project 8 59238508 59238616 + Gm24847 snRNA snRNA MGP_C3HHeJ_T0090495.1 MGP_C3HHeJ_G0033938.1 mouse_genomes_project 8 126000299 126003951 + MGP_C3HHeJ_P0090495 Mc1r protein_coding protein_coding MGP_C3HHeJ_T0089535.1 MGP_C3HHeJ_G0033621.1 mouse_genomes_project 8 93688246 93714915 + MGP_C3HHeJ_P0089535 Mmp2 protein_coding protein_coding MGP_C3HHeJ_T0015781.1 MGP_C3HHeJ_G0013885.1 mouse_genomes_project 8 75541242 75542083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009013.1 MGP_C3HHeJ_G0007240.1 mouse_genomes_project 8 39696423 39699650 - Gm26584 lincRNA lincRNA MGP_C3HHeJ_T0088082.1 MGP_C3HHeJ_G0033177.1 mouse_genomes_project 8 23940340 23961000 - MGP_C3HHeJ_P0088082 Bag4 protein_coding protein_coding MGP_C3HHeJ_T0090572.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647562 127865223 + MGP_C3HHeJ_P0090572 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090573.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647562 127865924 + MGP_C3HHeJ_P0090573 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090574.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647562 127865223 + MGP_C3HHeJ_P0090574 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090575.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647562 127865924 + MGP_C3HHeJ_P0090575 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090576.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647562 127865223 + MGP_C3HHeJ_P0090576 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090577.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647562 127865223 + MGP_C3HHeJ_P0090577 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090578.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647576 127686730 + MGP_C3HHeJ_P0090578 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090579.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127647597 127865220 + MGP_C3HHeJ_P0090579 Disc1 protein_coding protein_coding MGP_C3HHeJ_T0090580.1 MGP_C3HHeJ_G0033969.1 mouse_genomes_project 8 127683739 127701051 + Disc1 protein_coding processed_transcript MGP_C3HHeJ_T0015774.1 MGP_C3HHeJ_G0013878.1 mouse_genomes_project 8 60755363 60755736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010925.1 MGP_C3HHeJ_G0009058.1 mouse_genomes_project 8 113070589 113070666 - Gm24103 miRNA miRNA MGP_C3HHeJ_T0005266.1 MGP_C3HHeJ_G0004457.1 mouse_genomes_project 8 13736897 13743201 + Gm16346 antisense antisense MGP_C3HHeJ_T0099649.1 MGP_C3HHeJ_G0037843.1 mouse_genomes_project 8 79403845 79403952 - Gm22044 snRNA snRNA MGP_C3HHeJ_T0089762.1 MGP_C3HHeJ_G0033704.1 mouse_genomes_project 8 106342137 106352531 + MGP_C3HHeJ_P0089762 Ces2a protein_coding protein_coding MGP_C3HHeJ_T0089763.1 MGP_C3HHeJ_G0033704.1 mouse_genomes_project 8 106342152 106352535 + MGP_C3HHeJ_P0089763 Ces2a protein_coding protein_coding MGP_C3HHeJ_T0089764.1 MGP_C3HHeJ_G0033704.1 mouse_genomes_project 8 106342162 106348425 + Ces2a protein_coding processed_transcript MGP_C3HHeJ_T0087682.1 MGP_C3HHeJ_G0033042.1 mouse_genomes_project 8 7276951 7306625 + MGP_C3HHeJ_P0087682 Tnfsf13b protein_coding protein_coding MGP_C3HHeJ_T0087943.1 MGP_C3HHeJ_G0033140.1 mouse_genomes_project 8 20406247 20429328 - MGP_C3HHeJ_P0087943 Slc25a15 protein_coding protein_coding MGP_C3HHeJ_T0011626.1 MGP_C3HHeJ_G0009759.1 mouse_genomes_project 8 80407040 80407215 + Gm27820 misc_RNA misc_RNA MGP_C3HHeJ_T0009048.1 MGP_C3HHeJ_G0007272.1 mouse_genomes_project 8 87814005 87844936 - Gm10637 lincRNA lincRNA MGP_C3HHeJ_T0009049.1 MGP_C3HHeJ_G0007272.1 mouse_genomes_project 8 87840187 87844947 - Gm10637 lincRNA lincRNA MGP_C3HHeJ_T0089579.1 MGP_C3HHeJ_G0033636.1 mouse_genomes_project 8 94917318 94937038 - MGP_C3HHeJ_P0089579 Nudt21 protein_coding protein_coding MGP_C3HHeJ_T0009054.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125105 88174374 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0009055.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125105 88174375 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0009056.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125105 88172585 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0009057.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125137 88174373 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0009058.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125409 88173828 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0009059.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125427 88174375 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0009060.1 MGP_C3HHeJ_G0007277.1 mouse_genomes_project 8 88125450 88152932 + Gm2694 lincRNA lincRNA MGP_C3HHeJ_T0089030.1 MGP_C3HHeJ_G0033470.1 mouse_genomes_project 8 72739467 72797438 - MGP_C3HHeJ_P0089030 Med26 protein_coding protein_coding MGP_C3HHeJ_T0089726.1 MGP_C3HHeJ_G0033688.1 mouse_genomes_project 8 105772790 105795247 - MGP_C3HHeJ_P0089726 Tk2 protein_coding protein_coding MGP_C3HHeJ_T0088706.1 MGP_C3HHeJ_G0033379.1 mouse_genomes_project 8 70082858 70091393 - MGP_C3HHeJ_P0088706 Rfxank protein_coding protein_coding MGP_C3HHeJ_T0088708.1 MGP_C3HHeJ_G0033379.1 mouse_genomes_project 8 70085444 70091289 - MGP_C3HHeJ_P0088708 Rfxank protein_coding unknown_likely_coding MGP_C3HHeJ_T0088478.1 MGP_C3HHeJ_G0033308.1 mouse_genomes_project 8 56180411 56200546 + Fbxo8 protein_coding retained_intron MGP_C3HHeJ_T0088479.1 MGP_C3HHeJ_G0033308.1 mouse_genomes_project 8 56180452 56221317 + MGP_C3HHeJ_P0088479 Fbxo8 protein_coding protein_coding MGP_C3HHeJ_T0089075.1 MGP_C3HHeJ_G0033485.1 mouse_genomes_project 8 77560026 77838325 - MGP_C3HHeJ_P0089075 Arhgap10 protein_coding protein_coding MGP_C3HHeJ_T0100883.1 MGP_C3HHeJ_G0039077.1 mouse_genomes_project 8 22798018 22798142 + Gm26208 snoRNA snoRNA MGP_C3HHeJ_T0005277.1 MGP_C3HHeJ_G0004464.1 mouse_genomes_project 8 32337832 32357630 + Gm26632 antisense antisense MGP_C3HHeJ_T0089045.1 MGP_C3HHeJ_G0033476.1 mouse_genomes_project 8 73054868 73582992 - MGP_C3HHeJ_P0089045 Large protein_coding protein_coding MGP_C3HHeJ_T0089046.1 MGP_C3HHeJ_G0033476.1 mouse_genomes_project 8 73054868 73582008 - MGP_C3HHeJ_P0089046 Large protein_coding protein_coding MGP_C3HHeJ_T0089047.1 MGP_C3HHeJ_G0033476.1 mouse_genomes_project 8 73266279 73319508 - Large protein_coding retained_intron MGP_C3HHeJ_T0089695.1 MGP_C3HHeJ_G0033677.1 mouse_genomes_project 8 96679848 96680715 + Setd6 protein_coding processed_transcript MGP_C3HHeJ_T0089696.1 MGP_C3HHeJ_G0033677.1 mouse_genomes_project 8 96679865 96682930 + MGP_C3HHeJ_P0089696 Setd6 protein_coding protein_coding MGP_C3HHeJ_T0089697.1 MGP_C3HHeJ_G0033677.1 mouse_genomes_project 8 96680095 96681171 + Setd6 protein_coding processed_transcript MGP_C3HHeJ_T0089698.1 MGP_C3HHeJ_G0033677.1 mouse_genomes_project 8 96680544 96682439 + Setd6 protein_coding processed_transcript MGP_C3HHeJ_T0089699.1 MGP_C3HHeJ_G0033677.1 mouse_genomes_project 8 96680553 96681986 + Setd6 protein_coding processed_transcript MGP_C3HHeJ_T0089700.1 MGP_C3HHeJ_G0033677.1 mouse_genomes_project 8 96680942 96682791 + Setd6 protein_coding processed_transcript MGP_C3HHeJ_T0005269.1 MGP_C3HHeJ_G0004459.1 mouse_genomes_project 8 20731078 20740468 + Gm15346 antisense antisense MGP_C3HHeJ_T0089536.1 MGP_C3HHeJ_G0033622.1 mouse_genomes_project 8 93716844 93780648 + MGP_C3HHeJ_P0089536 Lpcat2 protein_coding protein_coding MGP_C3HHeJ_T0089537.1 MGP_C3HHeJ_G0033622.1 mouse_genomes_project 8 93716974 93731446 + Lpcat2 protein_coding processed_transcript MGP_C3HHeJ_T0089539.1 MGP_C3HHeJ_G0033622.1 mouse_genomes_project 8 93767551 93779409 + Lpcat2 protein_coding processed_transcript MGP_C3HHeJ_T0009047.1 MGP_C3HHeJ_G0007271.1 mouse_genomes_project 8 87755926 87843504 + Gm27246 lincRNA lincRNA MGP_C3HHeJ_T0088658.1 MGP_C3HHeJ_G0033361.1 mouse_genomes_project 8 69635571 69639963 - MGP_C3HHeJ_P0088658 Zfp869 protein_coding protein_coding MGP_C3HHeJ_T0088609.1 MGP_C3HHeJ_G0033348.1 mouse_genomes_project 8 68156136 68227030 + MGP_C3HHeJ_P0088609 Sh2d4a protein_coding protein_coding MGP_C3HHeJ_T0011631.1 MGP_C3HHeJ_G0009764.1 mouse_genomes_project 8 106904563 106904652 + Gm24629 misc_RNA misc_RNA MGP_C3HHeJ_T0087763.1 MGP_C3HHeJ_G0033062.1 mouse_genomes_project 8 10448653 10458429 + MGP_C3HHeJ_P0087763 F7 protein_coding protein_coding MGP_C3HHeJ_T0011636.1 MGP_C3HHeJ_G0009769.1 mouse_genomes_project 8 126106103 126106384 + Gm22314 misc_RNA misc_RNA MGP_C3HHeJ_T0009017.1 MGP_C3HHeJ_G0007244.1 mouse_genomes_project 8 46489269 46664413 - lincRNA lincRNA MGP_C3HHeJ_T0089602.1 MGP_C3HHeJ_G0033646.1 mouse_genomes_project 8 95391983 95445850 + MGP_C3HHeJ_P0089602 Nlrc5 protein_coding protein_coding MGP_C3HHeJ_T0089603.1 MGP_C3HHeJ_G0033646.1 mouse_genomes_project 8 95395342 95426727 + Nlrc5 protein_coding retained_intron MGP_C3HHeJ_T0089604.1 MGP_C3HHeJ_G0033646.1 mouse_genomes_project 8 95402183 95411741 + MGP_C3HHeJ_P0089604 Nlrc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089605.1 MGP_C3HHeJ_G0033646.1 mouse_genomes_project 8 95441205 95443284 + Nlrc5 protein_coding retained_intron MGP_C3HHeJ_T0089606.1 MGP_C3HHeJ_G0033646.1 mouse_genomes_project 8 95444841 95447043 + Nlrc5 protein_coding retained_intron MGP_C3HHeJ_T0089607.1 MGP_C3HHeJ_G0033646.1 mouse_genomes_project 8 95444841 95447039 + MGP_C3HHeJ_P0089607 Nlrc5 protein_coding protein_coding MGP_C3HHeJ_T0010884.1 MGP_C3HHeJ_G0009017.1 mouse_genomes_project 8 71726571 71726631 - Mir6769b miRNA miRNA MGP_C3HHeJ_T0002299.1 MGP_C3HHeJ_G0002218.1 mouse_genomes_project 8 108935742 108936525 + TEC TEC MGP_C3HHeJ_T0087702.1 MGP_C3HHeJ_G0033051.1 mouse_genomes_project 8 8959097 8983250 - MGP_C3HHeJ_P0087702 Ankrd10 protein_coding protein_coding MGP_C3HHeJ_T0087703.1 MGP_C3HHeJ_G0033051.1 mouse_genomes_project 8 8961665 8983250 - MGP_C3HHeJ_P0087703 Ankrd10 protein_coding protein_coding MGP_C3HHeJ_T0090071.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113087553 113116654 - MGP_C3HHeJ_P0090071 Clec18a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090072.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113087553 113116654 - MGP_C3HHeJ_P0090072 Clec18a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090073.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113087553 113116654 - MGP_C3HHeJ_P0090073 Clec18a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090074.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113099193 113116654 - MGP_C3HHeJ_P0090074 Clec18a protein_coding protein_coding MGP_C3HHeJ_T0090075.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113099193 113116428 - MGP_C3HHeJ_P0090075 Clec18a protein_coding protein_coding MGP_C3HHeJ_T0090076.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113099194 113116654 - MGP_C3HHeJ_P0090076 Clec18a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090077.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113099194 113125894 - MGP_C3HHeJ_P0090077 Clec18a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090078.1 MGP_C3HHeJ_G0033819.1 mouse_genomes_project 8 113099586 113116207 - MGP_C3HHeJ_P0090078 Clec18a protein_coding unknown_likely_coding MGP_C3HHeJ_T0088768.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70268706 70279264 + MGP_C3HHeJ_P0088768 Cope protein_coding protein_coding MGP_C3HHeJ_T0088769.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70268929 70272653 + Cope protein_coding retained_intron MGP_C3HHeJ_T0088770.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70268957 70279267 + Cope protein_coding retained_intron MGP_C3HHeJ_T0088771.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70268961 70276722 + MGP_C3HHeJ_P0088771 Cope protein_coding protein_coding MGP_C3HHeJ_T0088772.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70268981 70273158 + Cope protein_coding retained_intron MGP_C3HHeJ_T0088773.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70268984 70279046 + MGP_C3HHeJ_P0088773 Cope protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088774.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70271886 70279264 + MGP_C3HHeJ_P0088774 Cope protein_coding protein_coding MGP_C3HHeJ_T0088775.1 MGP_C3HHeJ_G0033389.1 mouse_genomes_project 8 70274740 70279264 + MGP_C3HHeJ_P0088775 Cope protein_coding protein_coding MGP_C3HHeJ_T0008994.1 MGP_C3HHeJ_G0007225.1 mouse_genomes_project 8 20516243 20521252 + Gm17491 lincRNA lincRNA MGP_C3HHeJ_T0089865.1 MGP_C3HHeJ_G0033745.1 mouse_genomes_project 8 107500386 107562538 - MGP_C3HHeJ_P0089865 Ranbp10 protein_coding protein_coding MGP_C3HHeJ_T0088092.1 MGP_C3HHeJ_G0033181.1 mouse_genomes_project 8 24023708 24118548 + MGP_C3HHeJ_P0088092 Kcnu1 protein_coding protein_coding MGP_C3HHeJ_T0088093.1 MGP_C3HHeJ_G0033181.1 mouse_genomes_project 8 24088974 24118549 + MGP_C3HHeJ_P0088093 Kcnu1 protein_coding protein_coding MGP_C3HHeJ_T0088094.1 MGP_C3HHeJ_G0033181.1 mouse_genomes_project 8 24088986 24099577 + MGP_C3HHeJ_P0088094 Kcnu1 protein_coding protein_coding MGP_C3HHeJ_T0087965.1 MGP_C3HHeJ_G0033148.1 mouse_genomes_project 8 20799428 20831852 + MGP_C3HHeJ_P0087965 Plat protein_coding protein_coding MGP_C3HHeJ_T0088448.1 MGP_C3HHeJ_G0033298.1 mouse_genomes_project 8 53620053 53732618 + MGP_C3HHeJ_P0088448 Vegfc protein_coding protein_coding MGP_C3HHeJ_T0090142.1 MGP_C3HHeJ_G0033842.1 mouse_genomes_project 8 115841284 115999923 - MGP_C3HHeJ_P0090142 Adamts18 protein_coding protein_coding MGP_C3HHeJ_T0010898.1 MGP_C3HHeJ_G0009031.1 mouse_genomes_project 8 84779233 84779338 + Mir24-2 miRNA miRNA MGP_C3HHeJ_T0090266.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 122676885 123025808 + MGP_C3HHeJ_P0090266 Gse1 protein_coding protein_coding MGP_C3HHeJ_T0090267.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 122953099 123054986 + MGP_C3HHeJ_P0090267 Gse1 protein_coding protein_coding MGP_C3HHeJ_T0090268.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 123005262 123053076 + MGP_C3HHeJ_P0090268 Gse1 protein_coding protein_coding MGP_C3HHeJ_T0090269.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 123006834 123052922 + MGP_C3HHeJ_P0090269 Gse1 protein_coding protein_coding MGP_C3HHeJ_T0090270.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 123025759 123054981 + MGP_C3HHeJ_P0090270 Gse1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090271.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 123044876 123046868 + Gse1 protein_coding retained_intron MGP_C3HHeJ_T0090272.1 MGP_C3HHeJ_G0033885.1 mouse_genomes_project 8 123044924 123048806 + Gse1 protein_coding processed_transcript MGP_C3HHeJ_T0088393.1 MGP_C3HHeJ_G0033279.1 mouse_genomes_project 8 45784354 45806668 + MGP_C3HHeJ_P0088393 Casp3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0015751.1 MGP_C3HHeJ_G0013855.1 mouse_genomes_project 8 17267611 17270091 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010920.1 MGP_C3HHeJ_G0009053.1 mouse_genomes_project 8 109396115 109396185 + Mir140 miRNA miRNA MGP_C3HHeJ_T0090185.1 MGP_C3HHeJ_G0033858.1 mouse_genomes_project 8 119589118 119803124 + MGP_C3HHeJ_P0090185 Cmip protein_coding protein_coding MGP_C3HHeJ_T0090186.1 MGP_C3HHeJ_G0033858.1 mouse_genomes_project 8 119690906 119803124 + MGP_C3HHeJ_P0090186 Cmip protein_coding protein_coding MGP_C3HHeJ_T0010883.1 MGP_C3HHeJ_G0009016.1 mouse_genomes_project 8 70938699 70938793 + Mir1969 miRNA miRNA MGP_C3HHeJ_T0089680.1 MGP_C3HHeJ_G0033670.1 mouse_genomes_project 8 96303590 96325620 + MGP_C3HHeJ_P0089680 Mmp15 protein_coding protein_coding MGP_C3HHeJ_T0089869.1 MGP_C3HHeJ_G0033749.1 mouse_genomes_project 8 107598503 107618309 + MGP_C3HHeJ_P0089869 Nutf2-ps1 protein_coding protein_coding MGP_C3HHeJ_T0089658.1 MGP_C3HHeJ_G0033665.1 mouse_genomes_project 8 96039488 96075756 - MGP_C3HHeJ_P0089658 Kifc3 protein_coding protein_coding MGP_C3HHeJ_T0089659.1 MGP_C3HHeJ_G0033665.1 mouse_genomes_project 8 96039488 96075756 - MGP_C3HHeJ_P0089659 Kifc3 protein_coding protein_coding MGP_C3HHeJ_T0089660.1 MGP_C3HHeJ_G0033665.1 mouse_genomes_project 8 96039488 96052985 - MGP_C3HHeJ_P0089660 Kifc3 protein_coding protein_coding MGP_C3HHeJ_T0015777.1 MGP_C3HHeJ_G0013881.1 mouse_genomes_project 8 66438234 66438531 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089374.1 MGP_C3HHeJ_G0033574.1 mouse_genomes_project 8 85648226 85651675 + MGP_C3HHeJ_P0089374 2310036O22Rik protein_coding protein_coding MGP_C3HHeJ_T0088929.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71571818 71577127 + MGP_C3HHeJ_P0088929 Gtpbp3 protein_coding protein_coding MGP_C3HHeJ_T0088930.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71571818 71577127 + MGP_C3HHeJ_P0088930 Gtpbp3 protein_coding protein_coding MGP_C3HHeJ_T0088931.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71572436 71577127 + MGP_C3HHeJ_P0088931 Gtpbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088932.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71572443 71582498 + MGP_C3HHeJ_P0088932 Gtpbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088933.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71572449 71573296 + Gtpbp3 protein_coding retained_intron MGP_C3HHeJ_T0088934.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71572458 71577127 + Gtpbp3 protein_coding retained_intron MGP_C3HHeJ_T0088935.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71572466 71577127 + MGP_C3HHeJ_P0088935 Gtpbp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088936.1 MGP_C3HHeJ_G0033438.1 mouse_genomes_project 8 71573176 71575132 + Gtpbp3 protein_coding retained_intron MGP_C3HHeJ_T0087774.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10527943 10579135 + MGP_C3HHeJ_P0087774 Cul4a protein_coding protein_coding MGP_C3HHeJ_T0087775.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10528062 10547137 + MGP_C3HHeJ_P0087775 Cul4a protein_coding protein_coding MGP_C3HHeJ_T0087776.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10528258 10544661 + Cul4a protein_coding retained_intron MGP_C3HHeJ_T0087777.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10546439 10578557 + MGP_C3HHeJ_P0087777 Cul4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087778.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10569760 10572510 + Cul4a protein_coding retained_intron MGP_C3HHeJ_T0087779.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10570224 10577814 + Cul4a protein_coding processed_transcript MGP_C3HHeJ_T0087780.1 MGP_C3HHeJ_G0033066.1 mouse_genomes_project 8 10575419 10579135 + Cul4a protein_coding retained_intron MGP_C3HHeJ_T0098186.1 MGP_C3HHeJ_G0036398.1 mouse_genomes_project 8 2379293 2379412 - n-R5s94 rRNA rRNA MGP_C3HHeJ_T0098197.1 MGP_C3HHeJ_G0036409.1 mouse_genomes_project 8 117274324 117274424 - Gm22556 rRNA rRNA MGP_C3HHeJ_T0088568.1 MGP_C3HHeJ_G0033333.1 mouse_genomes_project 8 64741565 64766236 + MGP_C3HHeJ_P0088568 Tmem192 protein_coding protein_coding MGP_C3HHeJ_T0088569.1 MGP_C3HHeJ_G0033333.1 mouse_genomes_project 8 64741565 64766236 + MGP_C3HHeJ_P0088569 Tmem192 protein_coding protein_coding MGP_C3HHeJ_T0089543.1 MGP_C3HHeJ_G0033626.1 mouse_genomes_project 8 93925774 93949491 - MGP_C3HHeJ_P0089543 Ces1b protein_coding protein_coding MGP_C3HHeJ_T0088468.1 MGP_C3HHeJ_G0033306.1 mouse_genomes_project 8 55905263 55932068 + MGP_C3HHeJ_P0088468 Hpgd protein_coding protein_coding MGP_C3HHeJ_T0005322.1 MGP_C3HHeJ_G0004503.1 mouse_genomes_project 8 116881263 116890808 - Gm16118 antisense antisense MGP_C3HHeJ_T0089737.1 MGP_C3HHeJ_G0033695.1 mouse_genomes_project 8 105925783 105977059 - MGP_C3HHeJ_P0089737 Cmtm4 protein_coding protein_coding MGP_C3HHeJ_T0088559.1 MGP_C3HHeJ_G0033330.1 mouse_genomes_project 8 64382649 64489344 - MGP_C3HHeJ_P0088559 Cpe protein_coding protein_coding MGP_C3HHeJ_T0088441.1 MGP_C3HHeJ_G0033296.1 mouse_genomes_project 8 53025550 53037716 + MGP_C3HHeJ_P0088441 Aga protein_coding protein_coding MGP_C3HHeJ_T0100872.1 MGP_C3HHeJ_G0039066.1 mouse_genomes_project 8 4853553 4853682 + Gm25169 snoRNA snoRNA MGP_C3HHeJ_T0088250.1 MGP_C3HHeJ_G0033243.1 mouse_genomes_project 8 39367520 39451427 - MGP_C3HHeJ_P0088250 Mtmr7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088251.1 MGP_C3HHeJ_G0033243.1 mouse_genomes_project 8 39367526 39451414 - MGP_C3HHeJ_P0088251 Mtmr7 protein_coding protein_coding MGP_C3HHeJ_T0088252.1 MGP_C3HHeJ_G0033243.1 mouse_genomes_project 8 39370304 39405993 - MGP_C3HHeJ_P0088252 Mtmr7 protein_coding protein_coding MGP_C3HHeJ_T0088253.1 MGP_C3HHeJ_G0033243.1 mouse_genomes_project 8 39371111 39451430 - MGP_C3HHeJ_P0088253 Mtmr7 protein_coding protein_coding MGP_C3HHeJ_T0088254.1 MGP_C3HHeJ_G0033243.1 mouse_genomes_project 8 39380877 39451397 - MGP_C3HHeJ_P0088254 Mtmr7 protein_coding protein_coding MGP_C3HHeJ_T0088255.1 MGP_C3HHeJ_G0033243.1 mouse_genomes_project 8 39422346 39451435 - Mtmr7 protein_coding processed_transcript MGP_C3HHeJ_T0088971.1 MGP_C3HHeJ_G0033451.1 mouse_genomes_project 8 71789826 71799822 - MGP_C3HHeJ_P0088971 B3gnt3 protein_coding protein_coding MGP_C3HHeJ_T0089895.1 MGP_C3HHeJ_G0033760.1 mouse_genomes_project 8 107753286 107755548 - MGP_C3HHeJ_P0089895 Ddx28 protein_coding protein_coding MGP_C3HHeJ_T0089648.1 MGP_C3HHeJ_G0033660.1 mouse_genomes_project 8 95852592 95866038 + MGP_C3HHeJ_P0089648 Adgrg5 protein_coding protein_coding MGP_C3HHeJ_T0089649.1 MGP_C3HHeJ_G0033660.1 mouse_genomes_project 8 95852592 95874700 + MGP_C3HHeJ_P0089649 Adgrg5 protein_coding protein_coding MGP_C3HHeJ_T0089650.1 MGP_C3HHeJ_G0033660.1 mouse_genomes_project 8 95852592 95874710 + MGP_C3HHeJ_P0089650 Adgrg5 protein_coding protein_coding MGP_C3HHeJ_T0089651.1 MGP_C3HHeJ_G0033660.1 mouse_genomes_project 8 95852597 95874700 + MGP_C3HHeJ_P0089651 Adgrg5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089652.1 MGP_C3HHeJ_G0033660.1 mouse_genomes_project 8 95865688 95866606 + Adgrg5 protein_coding processed_transcript MGP_C3HHeJ_T0088699.1 MGP_C3HHeJ_G0033376.1 mouse_genomes_project 8 70025395 70032493 + MGP_C3HHeJ_P0088699 Tm6sf2 protein_coding protein_coding MGP_C3HHeJ_T0088700.1 MGP_C3HHeJ_G0033376.1 mouse_genomes_project 8 70025403 70032479 + MGP_C3HHeJ_P0088700 Tm6sf2 protein_coding protein_coding MGP_C3HHeJ_T0088701.1 MGP_C3HHeJ_G0033376.1 mouse_genomes_project 8 70026755 70028141 + Tm6sf2 protein_coding retained_intron MGP_C3HHeJ_T0088702.1 MGP_C3HHeJ_G0033376.1 mouse_genomes_project 8 70027855 70030556 + Tm6sf2 protein_coding retained_intron MGP_C3HHeJ_T0088703.1 MGP_C3HHeJ_G0033376.1 mouse_genomes_project 8 70029833 70031047 + Tm6sf2 protein_coding retained_intron MGP_C3HHeJ_T0087821.1 MGP_C3HHeJ_G0033082.1 mouse_genomes_project 8 11346962 11360069 + MGP_C3HHeJ_P0087821 Champ1 protein_coding protein_coding MGP_C3HHeJ_T0087822.1 MGP_C3HHeJ_G0033082.1 mouse_genomes_project 8 11347025 11358241 + MGP_C3HHeJ_P0087822 Champ1 protein_coding protein_coding MGP_C3HHeJ_T0002301.1 MGP_C3HHeJ_G0002220.1 mouse_genomes_project 8 110761105 110762809 + TEC TEC MGP_C3HHeJ_T0089499.1 MGP_C3HHeJ_G0033611.1 mouse_genomes_project 8 90990925 91096814 - MGP_C3HHeJ_P0089499 Tox3 protein_coding protein_coding MGP_C3HHeJ_T0089500.1 MGP_C3HHeJ_G0033611.1 mouse_genomes_project 8 90996591 91096602 - MGP_C3HHeJ_P0089500 Tox3 protein_coding protein_coding MGP_C3HHeJ_T0089501.1 MGP_C3HHeJ_G0033611.1 mouse_genomes_project 8 91002467 91096597 - MGP_C3HHeJ_P0089501 Tox3 protein_coding protein_coding MGP_C3HHeJ_T0089809.1 MGP_C3HHeJ_G0033722.1 mouse_genomes_project 8 106998880 107005055 - MGP_C3HHeJ_P0089809 Exoc3l protein_coding protein_coding MGP_C3HHeJ_T0002293.1 MGP_C3HHeJ_G0002213.1 mouse_genomes_project 8 75861860 75862267 - TEC TEC MGP_C3HHeJ_T0090233.1 MGP_C3HHeJ_G0033879.1 mouse_genomes_project 8 122299410 122315063 + MGP_C3HHeJ_P0090233 Klhl36 protein_coding protein_coding MGP_C3HHeJ_T0088690.1 MGP_C3HHeJ_G0033371.1 mouse_genomes_project 8 69843211 69851334 - MGP_C3HHeJ_P0088690 Ndufa13 protein_coding protein_coding MGP_C3HHeJ_T0088288.1 MGP_C3HHeJ_G0033253.1 mouse_genomes_project 8 42099051 42109805 + MGP_C3HHeJ_P0088288 Triml2 protein_coding protein_coding MGP_C3HHeJ_T0088212.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35251708 35438924 - MGP_C3HHeJ_P0088212 Dlc1 protein_coding protein_coding MGP_C3HHeJ_T0088213.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35251708 35304515 - MGP_C3HHeJ_P0088213 Dlc1 protein_coding protein_coding MGP_C3HHeJ_T0088214.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35254196 35670278 - MGP_C3HHeJ_P0088214 Dlc1 protein_coding protein_coding MGP_C3HHeJ_T0088215.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35256153 35261125 - Dlc1 protein_coding retained_intron MGP_C3HHeJ_T0088216.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35276901 35304446 - Dlc1 protein_coding retained_intron MGP_C3HHeJ_T0088217.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35559117 35670193 - Dlc1 protein_coding retained_intron MGP_C3HHeJ_T0088218.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35568157 35670258 - Dlc1 protein_coding retained_intron MGP_C3HHeJ_T0088219.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35652697 35670272 - Dlc1 protein_coding retained_intron MGP_C3HHeJ_T0088220.1 MGP_C3HHeJ_G0033233.1 mouse_genomes_project 8 35655668 35670978 - MGP_C3HHeJ_P0088220 Dlc1 protein_coding protein_coding MGP_C3HHeJ_T0088422.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47362213 47406716 + MGP_C3HHeJ_P0088422 Dctd protein_coding protein_coding MGP_C3HHeJ_T0088423.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47373118 47407772 + MGP_C3HHeJ_P0088423 Dctd protein_coding protein_coding MGP_C3HHeJ_T0088424.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47373173 47407770 + MGP_C3HHeJ_P0088424 Dctd protein_coding protein_coding MGP_C3HHeJ_T0088425.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47373322 47407770 + MGP_C3HHeJ_P0088425 Dctd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088426.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47373325 47403798 + Dctd protein_coding retained_intron MGP_C3HHeJ_T0088427.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47373349 47404698 + Dctd protein_coding processed_transcript MGP_C3HHeJ_T0088428.1 MGP_C3HHeJ_G0033293.1 mouse_genomes_project 8 47373371 47419339 + MGP_C3HHeJ_P0088428 Dctd protein_coding protein_coding MGP_C3HHeJ_T0088153.1 MGP_C3HHeJ_G0033210.1 mouse_genomes_project 8 31940435 31941277 + MGP_C3HHeJ_P0088153 5930422O12Rik protein_coding protein_coding MGP_C3HHeJ_T0015771.1 MGP_C3HHeJ_G0013875.1 mouse_genomes_project 8 45078374 45078680 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090230.1 MGP_C3HHeJ_G0033877.1 mouse_genomes_project 8 122191637 122212204 - MGP_C3HHeJ_P0090230 Tldc1 protein_coding protein_coding MGP_C3HHeJ_T0087798.1 MGP_C3HHeJ_G0033073.1 mouse_genomes_project 8 10840586 10849460 - MGP_C3HHeJ_P0087798 Atp4b protein_coding protein_coding MGP_C3HHeJ_T0088647.1 MGP_C3HHeJ_G0033356.1 mouse_genomes_project 8 69190723 69204703 + MGP_C3HHeJ_P0088647 D130040H23Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0088648.1 MGP_C3HHeJ_G0033356.1 mouse_genomes_project 8 69202409 69204785 + MGP_C3HHeJ_P0088648 D130040H23Rik protein_coding protein_coding MGP_C3HHeJ_T0098188.1 MGP_C3HHeJ_G0036400.1 mouse_genomes_project 8 12945392 12945485 + Gm24222 rRNA rRNA MGP_C3HHeJ_T0009012.1 MGP_C3HHeJ_G0007239.1 mouse_genomes_project 8 34211930 34218184 - Gm16793 lincRNA lincRNA MGP_C3HHeJ_T0090219.1 MGP_C3HHeJ_G0033871.1 mouse_genomes_project 8 121997318 122022741 + MGP_C3HHeJ_P0090219 Dnaaf1 protein_coding protein_coding MGP_C3HHeJ_T0087914.1 MGP_C3HHeJ_G0033124.1 mouse_genomes_project 8 19841401 19841737 + MGP_C3HHeJ_P0087914 Defb10 protein_coding protein_coding MGP_C3HHeJ_T0088143.1 MGP_C3HHeJ_G0033204.1 mouse_genomes_project 8 29604491 29618461 + MGP_C3HHeJ_P0088143 Tti2 protein_coding protein_coding MGP_C3HHeJ_T0088469.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56159042 56180179 - MGP_C3HHeJ_P0088469 Cep44 protein_coding protein_coding MGP_C3HHeJ_T0088470.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56159042 56174649 - MGP_C3HHeJ_P0088470 Cep44 protein_coding protein_coding MGP_C3HHeJ_T0088471.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56159996 56180072 - MGP_C3HHeJ_P0088471 Cep44 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088472.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56172090 56180165 - MGP_C3HHeJ_P0088472 Cep44 protein_coding protein_coding MGP_C3HHeJ_T0088473.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56173377 56180121 - MGP_C3HHeJ_P0088473 Cep44 protein_coding protein_coding MGP_C3HHeJ_T0088474.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56173444 56180194 - MGP_C3HHeJ_P0088474 Cep44 protein_coding protein_coding MGP_C3HHeJ_T0088475.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56174635 56180369 - MGP_C3HHeJ_P0088475 Cep44 protein_coding protein_coding MGP_C3HHeJ_T0088476.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56178242 56179519 - Cep44 protein_coding processed_transcript MGP_C3HHeJ_T0088477.1 MGP_C3HHeJ_G0033307.1 mouse_genomes_project 8 56178590 56180125 - Cep44 protein_coding processed_transcript MGP_C3HHeJ_T0100926.1 MGP_C3HHeJ_G0039120.1 mouse_genomes_project 8 112838561 112838650 - Snord111 snoRNA snoRNA MGP_C3HHeJ_T0011633.1 MGP_C3HHeJ_G0009766.1 mouse_genomes_project 8 112482349 112482640 + Gm22701 misc_RNA misc_RNA MGP_C3HHeJ_T0010909.1 MGP_C3HHeJ_G0009042.1 mouse_genomes_project 8 95236049 95236120 + Mir138-2 miRNA miRNA MGP_C3HHeJ_T0088737.1 MGP_C3HHeJ_G0033385.1 mouse_genomes_project 8 70182728 70196009 - MGP_C3HHeJ_P0088737 Armc6 protein_coding protein_coding MGP_C3HHeJ_T0088738.1 MGP_C3HHeJ_G0033385.1 mouse_genomes_project 8 70182754 70185368 - Armc6 protein_coding retained_intron MGP_C3HHeJ_T0088739.1 MGP_C3HHeJ_G0033385.1 mouse_genomes_project 8 70183033 70184840 - Armc6 protein_coding retained_intron MGP_C3HHeJ_T0088740.1 MGP_C3HHeJ_G0033385.1 mouse_genomes_project 8 70185764 70187756 - Armc6 protein_coding retained_intron MGP_C3HHeJ_T0088741.1 MGP_C3HHeJ_G0033385.1 mouse_genomes_project 8 70187188 70195992 - Armc6 protein_coding retained_intron MGP_C3HHeJ_T0088742.1 MGP_C3HHeJ_G0033385.1 mouse_genomes_project 8 70187896 70195663 - MGP_C3HHeJ_P0088742 Armc6 protein_coding protein_coding MGP_C3HHeJ_T0089759.1 MGP_C3HHeJ_G0033703.1 mouse_genomes_project 8 106248097 106250224 - MGP_C3HHeJ_P0089759 Fam96b protein_coding protein_coding MGP_C3HHeJ_T0089760.1 MGP_C3HHeJ_G0033703.1 mouse_genomes_project 8 106248099 106249958 - Fam96b protein_coding retained_intron MGP_C3HHeJ_T0089761.1 MGP_C3HHeJ_G0033703.1 mouse_genomes_project 8 106248106 106249960 - MGP_C3HHeJ_P0089761 Fam96b protein_coding protein_coding MGP_C3HHeJ_T0088000.1 MGP_C3HHeJ_G0033160.1 mouse_genomes_project 8 22645132 22668386 - Ido2 protein_coding processed_transcript MGP_C3HHeJ_T0088001.1 MGP_C3HHeJ_G0033160.1 mouse_genomes_project 8 22645692 22693909 - MGP_C3HHeJ_P0088001 Ido2 protein_coding protein_coding MGP_C3HHeJ_T0088002.1 MGP_C3HHeJ_G0033160.1 mouse_genomes_project 8 22646692 22654037 - Ido2 protein_coding retained_intron MGP_C3HHeJ_T0088003.1 MGP_C3HHeJ_G0033160.1 mouse_genomes_project 8 22646839 22668387 - MGP_C3HHeJ_P0088003 Ido2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088004.1 MGP_C3HHeJ_G0033160.1 mouse_genomes_project 8 22664546 22668343 - Ido2 protein_coding processed_transcript MGP_C3HHeJ_T0090422.1 MGP_C3HHeJ_G0033923.1 mouse_genomes_project 8 125452778 125547602 - MGP_C3HHeJ_P0090422 Ankrd11 protein_coding protein_coding MGP_C3HHeJ_T0090423.1 MGP_C3HHeJ_G0033923.1 mouse_genomes_project 8 125453818 125547602 - MGP_C3HHeJ_P0090423 Ankrd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090424.1 MGP_C3HHeJ_G0033923.1 mouse_genomes_project 8 125454147 125487407 - MGP_C3HHeJ_P0090424 Ankrd11 protein_coding protein_coding MGP_C3HHeJ_T0090425.1 MGP_C3HHeJ_G0033923.1 mouse_genomes_project 8 125467165 125487683 - MGP_C3HHeJ_P0090425 Ankrd11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090426.1 MGP_C3HHeJ_G0033923.1 mouse_genomes_project 8 125477128 125547582 - Ankrd11 protein_coding retained_intron MGP_C3HHeJ_T0002300.1 MGP_C3HHeJ_G0002219.1 mouse_genomes_project 8 110624533 110629741 + TEC TEC MGP_C3HHeJ_T0087546.1 MGP_C3HHeJ_G0033001.1 mouse_genomes_project 8 430764 434902 + MGP_C3HHeJ_P0087546 Zfp358 protein_coding protein_coding MGP_C3HHeJ_T0090336.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124343216 124371496 - MGP_C3HHeJ_P0090336 Klhdc4 protein_coding protein_coding MGP_C3HHeJ_T0090337.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124343236 124371467 - Klhdc4 protein_coding retained_intron MGP_C3HHeJ_T0090338.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124343247 124344331 - Klhdc4 protein_coding retained_intron MGP_C3HHeJ_T0090339.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124343450 124371407 - MGP_C3HHeJ_P0090339 Klhdc4 protein_coding protein_coding MGP_C3HHeJ_T0090340.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124343450 124371407 - MGP_C3HHeJ_P0090340 Klhdc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090341.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124343450 124371407 - MGP_C3HHeJ_P0090341 Klhdc4 protein_coding protein_coding MGP_C3HHeJ_T0090342.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124345075 124352582 - Klhdc4 protein_coding processed_transcript MGP_C3HHeJ_T0090343.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124346378 124348504 - Klhdc4 protein_coding retained_intron MGP_C3HHeJ_T0090344.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124367511 124371436 - Klhdc4 protein_coding retained_intron MGP_C3HHeJ_T0090345.1 MGP_C3HHeJ_G0033901.1 mouse_genomes_project 8 124367805 124371431 - MGP_C3HHeJ_P0090345 Klhdc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088649.1 MGP_C3HHeJ_G0033357.1 mouse_genomes_project 8 69274614 69279442 - MGP_C3HHeJ_P0088649 protein_coding protein_coding MGP_C3HHeJ_T0010903.1 MGP_C3HHeJ_G0009036.1 mouse_genomes_project 8 85735447 85735503 - Gm23388 miRNA miRNA MGP_C3HHeJ_T0100903.1 MGP_C3HHeJ_G0039097.1 mouse_genomes_project 8 65700312 65700447 + Gm26123 snoRNA snoRNA MGP_C3HHeJ_T0089482.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89018803 89020674 - Brd7 protein_coding processed_transcript MGP_C3HHeJ_T0089483.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89018813 89051252 - MGP_C3HHeJ_P0089483 Brd7 protein_coding protein_coding MGP_C3HHeJ_T0089484.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89020541 89021676 - Brd7 protein_coding processed_transcript MGP_C3HHeJ_T0089485.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89020560 89023242 - Brd7 protein_coding retained_intron MGP_C3HHeJ_T0089486.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89020640 89030589 - Brd7 protein_coding processed_transcript MGP_C3HHeJ_T0089487.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89021303 89030511 - Brd7 protein_coding processed_transcript MGP_C3HHeJ_T0089488.1 MGP_C3HHeJ_G0033605.1 mouse_genomes_project 8 89046589 89051072 - Brd7 protein_coding processed_transcript MGP_C3HHeJ_T0089048.1 MGP_C3HHeJ_G0033477.1 mouse_genomes_project 8 75115645 75137072 + MGP_C3HHeJ_P0089048 Isx protein_coding protein_coding MGP_C3HHeJ_T0089049.1 MGP_C3HHeJ_G0033477.1 mouse_genomes_project 8 75116012 75136713 + MGP_C3HHeJ_P0089049 Isx protein_coding protein_coding MGP_C3HHeJ_T0005290.1 MGP_C3HHeJ_G0004476.1 mouse_genomes_project 8 66227978 66230893 - Gm15354 antisense antisense MGP_C3HHeJ_T0090372.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124917956 124958660 + MGP_C3HHeJ_P0090372 Zc3h18 protein_coding protein_coding MGP_C3HHeJ_T0090373.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124917990 124958661 + MGP_C3HHeJ_P0090373 Zc3h18 protein_coding protein_coding MGP_C3HHeJ_T0090374.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124917991 124925057 + MGP_C3HHeJ_P0090374 Zc3h18 protein_coding protein_coding MGP_C3HHeJ_T0090375.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124917995 124931076 + Zc3h18 protein_coding retained_intron MGP_C3HHeJ_T0090376.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124918028 124958660 + MGP_C3HHeJ_P0090376 Zc3h18 protein_coding protein_coding MGP_C3HHeJ_T0090377.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124944578 124947428 + Zc3h18 protein_coding processed_transcript MGP_C3HHeJ_T0090378.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124944648 124952704 + MGP_C3HHeJ_P0090378 Zc3h18 protein_coding protein_coding MGP_C3HHeJ_T0090379.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124949143 124958660 + Zc3h18 protein_coding retained_intron MGP_C3HHeJ_T0090380.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124949318 124952205 + Zc3h18 protein_coding retained_intron MGP_C3HHeJ_T0090381.1 MGP_C3HHeJ_G0033907.1 mouse_genomes_project 8 124952625 124957549 + MGP_C3HHeJ_P0090381 Zc3h18 protein_coding protein_coding MGP_C3HHeJ_T0100925.1 MGP_C3HHeJ_G0039119.1 mouse_genomes_project 8 111767071 111767156 + Snord71 snoRNA snoRNA MGP_C3HHeJ_T0088181.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32613926 32618630 - Dctn6 protein_coding retained_intron MGP_C3HHeJ_T0088182.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32613929 32631645 - MGP_C3HHeJ_P0088182 Dctn6 protein_coding protein_coding MGP_C3HHeJ_T0088183.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32614069 32631385 - MGP_C3HHeJ_P0088183 Dctn6 protein_coding protein_coding MGP_C3HHeJ_T0088184.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32614084 32630663 - Dctn6 protein_coding processed_transcript MGP_C3HHeJ_T0088185.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32614102 32628789 - MGP_C3HHeJ_P0088185 Dctn6 protein_coding protein_coding MGP_C3HHeJ_T0088186.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32614113 32616430 - Dctn6 protein_coding retained_intron MGP_C3HHeJ_T0088187.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32614144 32630701 - MGP_C3HHeJ_P0088187 Dctn6 protein_coding protein_coding MGP_C3HHeJ_T0088188.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32616015 32621281 - Dctn6 protein_coding retained_intron MGP_C3HHeJ_T0088189.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32618289 32631326 - Dctn6 protein_coding retained_intron MGP_C3HHeJ_T0088190.1 MGP_C3HHeJ_G0033218.1 mouse_genomes_project 8 32618503 32631312 - MGP_C3HHeJ_P0088190 Dctn6 protein_coding protein_coding MGP_C3HHeJ_T0088939.1 MGP_C3HHeJ_G0033441.1 mouse_genomes_project 8 71635549 71640434 + MGP_C3HHeJ_P0088939 Mvb12a protein_coding protein_coding MGP_C3HHeJ_T0088380.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45717436 45747169 + MGP_C3HHeJ_P0088380 Cenpu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088381.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45717441 45746746 + MGP_C3HHeJ_P0088381 Cenpu protein_coding protein_coding MGP_C3HHeJ_T0088382.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45717442 45721618 + Cenpu protein_coding retained_intron MGP_C3HHeJ_T0088383.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45717468 45745740 + MGP_C3HHeJ_P0088383 Cenpu protein_coding unknown_likely_coding MGP_C3HHeJ_T0088384.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45717468 45745530 + MGP_C3HHeJ_P0088384 Cenpu protein_coding protein_coding MGP_C3HHeJ_T0088385.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45725458 45727825 + Cenpu protein_coding processed_transcript MGP_C3HHeJ_T0088386.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45727095 45739972 + Cenpu protein_coding retained_intron MGP_C3HHeJ_T0088387.1 MGP_C3HHeJ_G0033277.1 mouse_genomes_project 8 45740314 45745540 + Cenpu protein_coding retained_intron MGP_C3HHeJ_T0089594.1 MGP_C3HHeJ_G0033643.1 mouse_genomes_project 8 95121807 95226596 + MGP_C3HHeJ_P0089594 protein_coding protein_coding MGP_C3HHeJ_T0089595.1 MGP_C3HHeJ_G0033643.1 mouse_genomes_project 8 95135007 95226805 + MGP_C3HHeJ_P0089595 protein_coding protein_coding MGP_C3HHeJ_T0088289.1 MGP_C3HHeJ_G0033254.1 mouse_genomes_project 8 42218745 42230581 - MGP_C3HHeJ_P0088289 Zfp42 protein_coding protein_coding MGP_C3HHeJ_T0088588.1 MGP_C3HHeJ_G0033339.1 mouse_genomes_project 8 66320678 66334803 - Tma16 protein_coding retained_intron MGP_C3HHeJ_T0088589.1 MGP_C3HHeJ_G0033339.1 mouse_genomes_project 8 66323582 66334825 - MGP_C3HHeJ_P0088589 Tma16 protein_coding protein_coding MGP_C3HHeJ_T0088590.1 MGP_C3HHeJ_G0033339.1 mouse_genomes_project 8 66329558 66334836 - Tma16 protein_coding retained_intron MGP_C3HHeJ_T0088287.1 MGP_C3HHeJ_G0033252.1 mouse_genomes_project 8 42048534 42060297 - MGP_C3HHeJ_P0088287 Triml1 protein_coding protein_coding MGP_C3HHeJ_T0090591.1 MGP_C3HHeJ_G0033973.1 mouse_genomes_project 8 128381966 128530700 - MGP_C3HHeJ_P0090591 Pcnx2 protein_coding protein_coding MGP_C3HHeJ_T0090592.1 MGP_C3HHeJ_G0033973.1 mouse_genomes_project 8 128381967 128471756 - Pcnx2 protein_coding retained_intron MGP_C3HHeJ_T0090593.1 MGP_C3HHeJ_G0033973.1 mouse_genomes_project 8 128381969 128404587 - Pcnx2 protein_coding retained_intron MGP_C3HHeJ_T0090594.1 MGP_C3HHeJ_G0033973.1 mouse_genomes_project 8 128458572 128460443 - Pcnx2 protein_coding retained_intron MGP_C3HHeJ_T0090595.1 MGP_C3HHeJ_G0033973.1 mouse_genomes_project 8 128469512 128530700 - MGP_C3HHeJ_P0090595 Pcnx2 protein_coding protein_coding MGP_C3HHeJ_T0090596.1 MGP_C3HHeJ_G0033973.1 mouse_genomes_project 8 128493143 128530658 - Pcnx2 protein_coding processed_transcript MGP_C3HHeJ_T0089266.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85278158 85283862 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089267.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85278170 85278967 + Trmt1 protein_coding processed_transcript MGP_C3HHeJ_T0089268.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85278190 85284248 + MGP_C3HHeJ_P0089268 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089269.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85281786 85297704 + MGP_C3HHeJ_P0089269 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089270.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282167 85297683 + MGP_C3HHeJ_P0089270 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089271.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282177 85283665 + Trmt1 protein_coding processed_transcript MGP_C3HHeJ_T0089272.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282177 85284296 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089273.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282177 85293423 + MGP_C3HHeJ_P0089273 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089274.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282184 85297682 + MGP_C3HHeJ_P0089274 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089275.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282189 85294813 + MGP_C3HHeJ_P0089275 Trmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089276.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282192 85293194 + MGP_C3HHeJ_P0089276 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089277.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282203 85297704 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089278.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282203 85284154 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089279.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282204 85283737 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089280.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282205 85282899 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089281.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282206 85283734 + Trmt1 protein_coding processed_transcript MGP_C3HHeJ_T0089282.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282206 85293342 + MGP_C3HHeJ_P0089282 Trmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089283.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282206 85293366 + MGP_C3HHeJ_P0089283 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089284.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282209 85289249 + Trmt1 protein_coding processed_transcript MGP_C3HHeJ_T0089285.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282388 85297681 + MGP_C3HHeJ_P0089285 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089286.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282401 85293132 + MGP_C3HHeJ_P0089286 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089287.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85282556 85293423 + Trmt1 protein_coding processed_transcript MGP_C3HHeJ_T0089288.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85283314 85295020 + Trmt1 protein_coding processed_transcript MGP_C3HHeJ_T0089289.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85292814 85295324 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089290.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85294731 85295409 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089291.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85294862 85296148 + MGP_C3HHeJ_P0089291 Trmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089292.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85295209 85295842 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089293.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85296284 85297682 + MGP_C3HHeJ_P0089293 Trmt1 protein_coding protein_coding MGP_C3HHeJ_T0089294.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85296966 85297682 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0089295.1 MGP_C3HHeJ_G0033552.1 mouse_genomes_project 8 85297076 85297547 + Trmt1 protein_coding retained_intron MGP_C3HHeJ_T0009095.1 MGP_C3HHeJ_G0007299.1 mouse_genomes_project 8 112230413 112232628 - Gm26832 lincRNA lincRNA MGP_C3HHeJ_T0089686.1 MGP_C3HHeJ_G0033675.1 mouse_genomes_project 8 96592608 96604736 + MGP_C3HHeJ_P0089686 Gins3 protein_coding protein_coding MGP_C3HHeJ_T0088081.1 MGP_C3HHeJ_G0033176.1 mouse_genomes_project 8 23929360 23945508 + MGP_C3HHeJ_P0088081 protein_coding protein_coding MGP_C3HHeJ_T0089118.1 MGP_C3HHeJ_G0033499.1 mouse_genomes_project 8 80109255 80145344 - MGP_C3HHeJ_P0089118 Abce1 protein_coding protein_coding MGP_C3HHeJ_T0009091.1 MGP_C3HHeJ_G0007297.1 mouse_genomes_project 8 108371177 108378757 + 1110028F18Rik lincRNA lincRNA MGP_C3HHeJ_T0100902.1 MGP_C3HHeJ_G0039096.1 mouse_genomes_project 8 63625039 63625170 + Gm24580 snoRNA snoRNA MGP_C3HHeJ_T0090459.1 MGP_C3HHeJ_G0033932.1 mouse_genomes_project 8 125812723 125816675 - MGP_C3HHeJ_P0090459 Spata2l protein_coding protein_coding MGP_C3HHeJ_T0090460.1 MGP_C3HHeJ_G0033932.1 mouse_genomes_project 8 125812726 125816678 - MGP_C3HHeJ_P0090460 Spata2l protein_coding protein_coding MGP_C3HHeJ_T0100912.1 MGP_C3HHeJ_G0039106.1 mouse_genomes_project 8 82928641 82928777 + Gm25138 snoRNA snoRNA MGP_C3HHeJ_T0009034.1 MGP_C3HHeJ_G0007259.1 mouse_genomes_project 8 79701542 79714105 + Gm4890 lincRNA lincRNA MGP_C3HHeJ_T0089215.1 MGP_C3HHeJ_G0033533.1 mouse_genomes_project 8 84569800 84571737 - MGP_C3HHeJ_P0089215 2210011C24Rik protein_coding protein_coding MGP_C3HHeJ_T0089216.1 MGP_C3HHeJ_G0033533.1 mouse_genomes_project 8 84569817 84570990 - MGP_C3HHeJ_P0089216 2210011C24Rik protein_coding protein_coding MGP_C3HHeJ_T0089217.1 MGP_C3HHeJ_G0033533.1 mouse_genomes_project 8 84570345 84570990 - MGP_C3HHeJ_P0089217 2210011C24Rik protein_coding protein_coding MGP_C3HHeJ_T0089218.1 MGP_C3HHeJ_G0033533.1 mouse_genomes_project 8 84571022 84571750 - MGP_C3HHeJ_P0089218 2210011C24Rik protein_coding protein_coding MGP_C3HHeJ_T0089219.1 MGP_C3HHeJ_G0033533.1 mouse_genomes_project 8 84571030 84571735 - MGP_C3HHeJ_P0089219 2210011C24Rik protein_coding protein_coding MGP_C3HHeJ_T0010904.1 MGP_C3HHeJ_G0009037.1 mouse_genomes_project 8 86341295 86341412 + Mir8109 miRNA miRNA MGP_C3HHeJ_T0087556.1 MGP_C3HHeJ_G0033004.1 mouse_genomes_project 8 512220 517990 + protein_coding retained_intron MGP_C3HHeJ_T0087557.1 MGP_C3HHeJ_G0033004.1 mouse_genomes_project 8 512225 523056 + protein_coding retained_intron MGP_C3HHeJ_T0089363.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85587931 85593168 + MGP_C3HHeJ_P0089363 Prdx2 protein_coding protein_coding MGP_C3HHeJ_T0089364.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85587955 85593168 + MGP_C3HHeJ_P0089364 Prdx2 protein_coding protein_coding MGP_C3HHeJ_T0089365.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85588038 85590456 + Prdx2 protein_coding retained_intron MGP_C3HHeJ_T0089366.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85588038 85589472 + Prdx2 protein_coding retained_intron MGP_C3HHeJ_T0089367.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85588111 85593168 + MGP_C3HHeJ_P0089367 Prdx2 protein_coding protein_coding MGP_C3HHeJ_T0089368.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85588583 85592993 + MGP_C3HHeJ_P0089368 Prdx2 protein_coding protein_coding MGP_C3HHeJ_T0089369.1 MGP_C3HHeJ_G0033569.1 mouse_genomes_project 8 85589802 85592649 + Prdx2 protein_coding retained_intron MGP_C3HHeJ_T0005292.1 MGP_C3HHeJ_G0004478.1 mouse_genomes_project 8 67821607 67842915 + Gm15991 antisense antisense MGP_C3HHeJ_T0010877.1 MGP_C3HHeJ_G0009010.1 mouse_genomes_project 8 64300422 64300532 - Mir710 miRNA miRNA MGP_C3HHeJ_T0088787.1 MGP_C3HHeJ_G0033394.1 mouse_genomes_project 8 70421033 70448193 - MGP_C3HHeJ_P0088787 Klhl26 protein_coding protein_coding MGP_C3HHeJ_T0088788.1 MGP_C3HHeJ_G0033394.1 mouse_genomes_project 8 70421033 70448193 - MGP_C3HHeJ_P0088788 Klhl26 protein_coding protein_coding MGP_C3HHeJ_T0090203.1 MGP_C3HHeJ_G0033866.1 mouse_genomes_project 8 121853128 121862085 + MGP_C3HHeJ_P0090203 Osgin1 protein_coding protein_coding MGP_C3HHeJ_T0090204.1 MGP_C3HHeJ_G0033866.1 mouse_genomes_project 8 121856126 121862024 + Osgin1 protein_coding processed_transcript MGP_C3HHeJ_T0090205.1 MGP_C3HHeJ_G0033866.1 mouse_genomes_project 8 121856171 121865263 + Osgin1 protein_coding retained_intron MGP_C3HHeJ_T0090206.1 MGP_C3HHeJ_G0033866.1 mouse_genomes_project 8 121856193 121864064 + Osgin1 protein_coding retained_intron MGP_C3HHeJ_T0090207.1 MGP_C3HHeJ_G0033866.1 mouse_genomes_project 8 121856696 121864912 + MGP_C3HHeJ_P0090207 Osgin1 protein_coding protein_coding MGP_C3HHeJ_T0088148.1 MGP_C3HHeJ_G0033207.1 mouse_genomes_project 8 30213846 30216549 - MGP_C3HHeJ_P0088148 protein_coding protein_coding MGP_C3HHeJ_T0089375.1 MGP_C3HHeJ_G0033575.1 mouse_genomes_project 8 85658948 85682073 + MGP_C3HHeJ_P0089375 Tnpo2 protein_coding protein_coding MGP_C3HHeJ_T0089376.1 MGP_C3HHeJ_G0033575.1 mouse_genomes_project 8 85659201 85682073 + MGP_C3HHeJ_P0089376 Tnpo2 protein_coding protein_coding MGP_C3HHeJ_T0089377.1 MGP_C3HHeJ_G0033575.1 mouse_genomes_project 8 85660424 85682077 + MGP_C3HHeJ_P0089377 Tnpo2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087676.1 MGP_C3HHeJ_G0033038.1 mouse_genomes_project 8 5890607 5917420 - MGP_C3HHeJ_P0087676 Arglu1 protein_coding protein_coding MGP_C3HHeJ_T0088629.1 MGP_C3HHeJ_G0033352.1 mouse_genomes_project 8 68931622 68983571 - MGP_C3HHeJ_P0088629 Slc18a1 protein_coding protein_coding MGP_C3HHeJ_T0088630.1 MGP_C3HHeJ_G0033352.1 mouse_genomes_project 8 68958724 68970699 - Slc18a1 protein_coding retained_intron MGP_C3HHeJ_T0088631.1 MGP_C3HHeJ_G0033352.1 mouse_genomes_project 8 68963779 68968976 - Slc18a1 protein_coding retained_intron MGP_C3HHeJ_T0088632.1 MGP_C3HHeJ_G0033352.1 mouse_genomes_project 8 68968568 68983584 - Slc18a1 protein_coding processed_transcript MGP_C3HHeJ_T0088633.1 MGP_C3HHeJ_G0033352.1 mouse_genomes_project 8 68968636 68983558 - Slc18a1 protein_coding processed_transcript MGP_C3HHeJ_T0088819.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70504719 70513167 + MGP_C3HHeJ_P0088819 Fkbp8 protein_coding protein_coding MGP_C3HHeJ_T0088820.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70504742 70513165 + MGP_C3HHeJ_P0088820 Fkbp8 protein_coding protein_coding MGP_C3HHeJ_T0088821.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70504757 70509459 + Fkbp8 protein_coding retained_intron MGP_C3HHeJ_T0088822.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70504841 70513166 + MGP_C3HHeJ_P0088822 Fkbp8 protein_coding protein_coding MGP_C3HHeJ_T0088823.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70505004 70507584 + Fkbp8 protein_coding retained_intron MGP_C3HHeJ_T0088824.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70505811 70506547 + MGP_C3HHeJ_P0088824 Fkbp8 protein_coding protein_coding MGP_C3HHeJ_T0088825.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70508137 70512000 + Fkbp8 protein_coding retained_intron MGP_C3HHeJ_T0088826.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70508747 70512795 + Fkbp8 protein_coding retained_intron MGP_C3HHeJ_T0088827.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70509134 70512810 + Fkbp8 protein_coding retained_intron MGP_C3HHeJ_T0088828.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70509189 70512706 + Fkbp8 protein_coding retained_intron MGP_C3HHeJ_T0088829.1 MGP_C3HHeJ_G0033400.1 mouse_genomes_project 8 70511945 70512896 + MGP_C3HHeJ_P0088829 Fkbp8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088277.1 MGP_C3HHeJ_G0033248.1 mouse_genomes_project 8 40057296 40080882 - MGP_C3HHeJ_P0088277 Fgl1 protein_coding protein_coding MGP_C3HHeJ_T0088278.1 MGP_C3HHeJ_G0033248.1 mouse_genomes_project 8 40063476 40080879 - Fgl1 protein_coding retained_intron MGP_C3HHeJ_T0088957.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71719923 71769306 - MGP_C3HHeJ_P0088957 Unc13a protein_coding protein_coding MGP_C3HHeJ_T0088958.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71724578 71769285 - MGP_C3HHeJ_P0088958 Unc13a protein_coding protein_coding MGP_C3HHeJ_T0088959.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71730186 71737917 - MGP_C3HHeJ_P0088959 Unc13a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088960.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71730451 71739088 - Unc13a protein_coding retained_intron MGP_C3HHeJ_T0088961.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71737979 71742449 - MGP_C3HHeJ_P0088961 Unc13a protein_coding protein_coding MGP_C3HHeJ_T0088962.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71750121 71755007 - MGP_C3HHeJ_P0088962 Unc13a protein_coding protein_coding MGP_C3HHeJ_T0088963.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71756875 71769290 - Unc13a protein_coding retained_intron MGP_C3HHeJ_T0088964.1 MGP_C3HHeJ_G0033448.1 mouse_genomes_project 8 71756880 71765635 - Unc13a protein_coding retained_intron MGP_C3HHeJ_T0005275.1 MGP_C3HHeJ_G0004463.1 mouse_genomes_project 8 25281899 25282565 - Proscos antisense antisense MGP_C3HHeJ_T0005276.1 MGP_C3HHeJ_G0004463.1 mouse_genomes_project 8 25281904 25282520 - Proscos antisense antisense MGP_C3HHeJ_T0090367.1 MGP_C3HHeJ_G0033905.1 mouse_genomes_project 8 124822896 124878199 + MGP_C3HHeJ_P0090367 Zfpm1 protein_coding protein_coding MGP_C3HHeJ_T0090368.1 MGP_C3HHeJ_G0033905.1 mouse_genomes_project 8 124848618 124865049 + Zfpm1 protein_coding processed_transcript MGP_C3HHeJ_T0090369.1 MGP_C3HHeJ_G0033905.1 mouse_genomes_project 8 124874690 124875977 + Zfpm1 protein_coding processed_transcript MGP_C3HHeJ_T0090370.1 MGP_C3HHeJ_G0033905.1 mouse_genomes_project 8 124874778 124876709 + MGP_C3HHeJ_P0090370 Zfpm1 protein_coding protein_coding MGP_C3HHeJ_T0099632.1 MGP_C3HHeJ_G0037826.1 mouse_genomes_project 8 41653494 41653600 + Gm26181 snRNA snRNA MGP_C3HHeJ_T0088860.1 MGP_C3HHeJ_G0033417.1 mouse_genomes_project 8 70815086 70828880 + MGP_C3HHeJ_P0088860 Il12rb1 protein_coding protein_coding MGP_C3HHeJ_T0015799.1 MGP_C3HHeJ_G0013903.1 mouse_genomes_project 8 89910358 89910973 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010939.1 MGP_C3HHeJ_G0009072.1 mouse_genomes_project 8 126562496 126562578 + Mir1967 miRNA miRNA MGP_C3HHeJ_T0100887.1 MGP_C3HHeJ_G0039081.1 mouse_genomes_project 8 32214894 32215038 + Gm23123 snoRNA snoRNA MGP_C3HHeJ_T0089902.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107886433 107893089 - MGP_C3HHeJ_P0089902 Esrp2 protein_coding protein_coding MGP_C3HHeJ_T0089903.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107888339 107892928 - MGP_C3HHeJ_P0089903 Esrp2 protein_coding protein_coding MGP_C3HHeJ_T0089904.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107888842 107889190 - Esrp2 protein_coding processed_transcript MGP_C3HHeJ_T0089905.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107888929 107890839 - Esrp2 protein_coding retained_intron MGP_C3HHeJ_T0089906.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107889382 107890243 - Esrp2 protein_coding retained_intron MGP_C3HHeJ_T0089907.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107889642 107890243 - Esrp2 protein_coding retained_intron MGP_C3HHeJ_T0089908.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107889916 107891211 - Esrp2 protein_coding retained_intron MGP_C3HHeJ_T0089909.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107890073 107891056 - Esrp2 protein_coding retained_intron MGP_C3HHeJ_T0089910.1 MGP_C3HHeJ_G0033762.1 mouse_genomes_project 8 107892297 107892800 - Esrp2 protein_coding retained_intron MGP_C3HHeJ_T0087867.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 13408289 15073156 - MGP_C3HHeJ_P0087867 Csmd1 protein_coding protein_coding MGP_C3HHeJ_T0087868.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 13408297 13496616 - Csmd1 protein_coding retained_intron MGP_C3HHeJ_T0087869.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 13594789 15073156 - Csmd1 protein_coding processed_transcript MGP_C3HHeJ_T0087870.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 13801926 15073156 - Csmd1 protein_coding retained_intron MGP_C3HHeJ_T0087871.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 13860977 15073461 - Csmd1 protein_coding processed_transcript MGP_C3HHeJ_T0087872.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 14752220 15073260 - Csmd1 protein_coding retained_intron MGP_C3HHeJ_T0087873.1 MGP_C3HHeJ_G0033096.1 mouse_genomes_project 8 14910772 15073252 - Csmd1 protein_coding processed_transcript MGP_C3HHeJ_T0010930.1 MGP_C3HHeJ_G0009063.1 mouse_genomes_project 8 119800879 119800943 + Mir7078 miRNA miRNA MGP_C3HHeJ_T0089146.1 MGP_C3HHeJ_G0033510.1 mouse_genomes_project 8 83383449 83613258 + MGP_C3HHeJ_P0089146 Rnf150 protein_coding protein_coding MGP_C3HHeJ_T0087781.1 MGP_C3HHeJ_G0033067.1 mouse_genomes_project 8 10592513 10610078 + MGP_C3HHeJ_P0087781 Lamp1 protein_coding protein_coding MGP_C3HHeJ_T0015763.1 MGP_C3HHeJ_G0013867.1 mouse_genomes_project 8 33723372 33723905 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088663.1 MGP_C3HHeJ_G0033364.1 mouse_genomes_project 8 69701194 69710396 - MGP_C3HHeJ_P0088663 Zfp866 protein_coding protein_coding MGP_C3HHeJ_T0087882.1 MGP_C3HHeJ_G0033099.1 mouse_genomes_project 8 16409320 16455605 + MGP_C3HHeJ_P0087882 Agpat5 protein_coding protein_coding MGP_C3HHeJ_T0087883.1 MGP_C3HHeJ_G0033099.1 mouse_genomes_project 8 16409322 16447656 + MGP_C3HHeJ_P0087883 Agpat5 protein_coding protein_coding MGP_C3HHeJ_T0089883.1 MGP_C3HHeJ_G0033756.1 mouse_genomes_project 8 107684158 107707023 - MGP_C3HHeJ_P0089883 Slc12a4 protein_coding protein_coding MGP_C3HHeJ_T0089884.1 MGP_C3HHeJ_G0033756.1 mouse_genomes_project 8 107684158 107707094 - MGP_C3HHeJ_P0089884 Slc12a4 protein_coding protein_coding MGP_C3HHeJ_T0089885.1 MGP_C3HHeJ_G0033756.1 mouse_genomes_project 8 107687231 107688714 - Slc12a4 protein_coding retained_intron MGP_C3HHeJ_T0089886.1 MGP_C3HHeJ_G0033756.1 mouse_genomes_project 8 107694432 107705399 - MGP_C3HHeJ_P0089886 Slc12a4 protein_coding protein_coding MGP_C3HHeJ_T0089887.1 MGP_C3HHeJ_G0033756.1 mouse_genomes_project 8 107700961 107707053 - Slc12a4 protein_coding retained_intron MGP_C3HHeJ_T0015780.1 MGP_C3HHeJ_G0013884.1 mouse_genomes_project 8 73988857 73989340 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087947.1 MGP_C3HHeJ_G0033143.1 mouse_genomes_project 8 20576796 20603308 + MGP_C3HHeJ_P0087947 Slc20a2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0005287.1 MGP_C3HHeJ_G0004473.1 mouse_genomes_project 8 58142223 58143256 + Gm15882 antisense antisense MGP_C3HHeJ_T0009119.1 MGP_C3HHeJ_G0007318.1 mouse_genomes_project 8 125815559 125822820 + 4933417D19Rik lincRNA lincRNA MGP_C3HHeJ_T0089028.1 MGP_C3HHeJ_G0033469.1 mouse_genomes_project 8 72725327 72737568 - MGP_C3HHeJ_P0089028 Slc35e1 protein_coding protein_coding MGP_C3HHeJ_T0089029.1 MGP_C3HHeJ_G0033469.1 mouse_genomes_project 8 72729705 72737171 - MGP_C3HHeJ_P0089029 Slc35e1 protein_coding protein_coding MGP_C3HHeJ_T0005288.1 MGP_C3HHeJ_G0004474.1 mouse_genomes_project 8 60760769 60841847 - Gm16178 antisense antisense MGP_C3HHeJ_T0090022.1 MGP_C3HHeJ_G0033806.1 mouse_genomes_project 8 112096922 112124928 - MGP_C3HHeJ_P0090022 Calb2 protein_coding protein_coding MGP_C3HHeJ_T0015755.1 MGP_C3HHeJ_G0013859.1 mouse_genomes_project 8 18856570 18857693 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009039.1 MGP_C3HHeJ_G0007263.1 mouse_genomes_project 8 84446543 84458977 - Gm26721 lincRNA lincRNA MGP_C3HHeJ_T0089554.1 MGP_C3HHeJ_G0033630.1 mouse_genomes_project 8 94132796 94156211 - MGP_C3HHeJ_P0089554 Ces1f protein_coding protein_coding MGP_C3HHeJ_T0089555.1 MGP_C3HHeJ_G0033630.1 mouse_genomes_project 8 94133148 94135300 - Ces1f protein_coding retained_intron MGP_C3HHeJ_T0089556.1 MGP_C3HHeJ_G0033630.1 mouse_genomes_project 8 94141913 94143805 - Ces1f protein_coding retained_intron MGP_C3HHeJ_T0089557.1 MGP_C3HHeJ_G0033630.1 mouse_genomes_project 8 94142365 94143932 - Ces1f protein_coding retained_intron MGP_C3HHeJ_T0089558.1 MGP_C3HHeJ_G0033630.1 mouse_genomes_project 8 94150449 94151872 - Ces1f protein_coding retained_intron MGP_C3HHeJ_T0089559.1 MGP_C3HHeJ_G0033630.1 mouse_genomes_project 8 94150758 94156191 - MGP_C3HHeJ_P0089559 Ces1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100923.1 MGP_C3HHeJ_G0039117.1 mouse_genomes_project 8 102821115 102822131 - Gm22223 snoRNA snoRNA MGP_C3HHeJ_T0089100.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79417754 79463117 + MGP_C3HHeJ_P0089100 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0089101.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79417754 79591521 + MGP_C3HHeJ_P0089101 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0089102.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79417904 79588634 + MGP_C3HHeJ_P0089102 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0089103.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79511027 79591544 + MGP_C3HHeJ_P0089103 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0089104.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79513183 79590970 + MGP_C3HHeJ_P0089104 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0089105.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79573429 79588632 + MGP_C3HHeJ_P0089105 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0089106.1 MGP_C3HHeJ_G0033494.1 mouse_genomes_project 8 79576594 79587539 + MGP_C3HHeJ_P0089106 Zfp827 protein_coding protein_coding MGP_C3HHeJ_T0087599.1 MGP_C3HHeJ_G0033017.1 mouse_genomes_project 8 825264 831992 - MGP_C3HHeJ_P0087599 Cd209d protein_coding protein_coding MGP_C3HHeJ_T0005253.1 MGP_C3HHeJ_G0004448.1 mouse_genomes_project 8 9198515 9199938 - Gm15875 antisense antisense MGP_C3HHeJ_T0087892.1 MGP_C3HHeJ_G0033104.1 mouse_genomes_project 8 16710466 16713372 - MGP_C3HHeJ_P0087892 Defb12 protein_coding protein_coding MGP_C3HHeJ_T0090121.1 MGP_C3HHeJ_G0033833.1 mouse_genomes_project 8 113986949 114011254 - MGP_C3HHeJ_P0090121 Chst5 protein_coding protein_coding MGP_C3HHeJ_T0088134.1 MGP_C3HHeJ_G0033201.1 mouse_genomes_project 8 28560051 28571035 - MGP_C3HHeJ_P0088134 Tex24 protein_coding protein_coding MGP_C3HHeJ_T0089912.1 MGP_C3HHeJ_G0033764.1 mouse_genomes_project 8 107925507 107955918 + MGP_C3HHeJ_P0089912 Slc7a6 protein_coding protein_coding MGP_C3HHeJ_T0005282.1 MGP_C3HHeJ_G0004469.1 mouse_genomes_project 8 45306850 45310350 + Gm15634 antisense antisense MGP_C3HHeJ_T0009005.1 MGP_C3HHeJ_G0007234.1 mouse_genomes_project 8 32247489 32252498 - lincRNA lincRNA MGP_C3HHeJ_T0009006.1 MGP_C3HHeJ_G0007234.1 mouse_genomes_project 8 32247489 32252503 - lincRNA lincRNA MGP_C3HHeJ_T0089370.1 MGP_C3HHeJ_G0033570.1 mouse_genomes_project 8 85595252 85597092 - MGP_C3HHeJ_P0089370 Junb protein_coding protein_coding MGP_C3HHeJ_T0089929.1 MGP_C3HHeJ_G0033773.1 mouse_genomes_project 8 108667859 108682861 + MGP_C3HHeJ_P0089929 Has3 protein_coding protein_coding MGP_C3HHeJ_T0089930.1 MGP_C3HHeJ_G0033773.1 mouse_genomes_project 8 108668453 108679951 + MGP_C3HHeJ_P0089930 Has3 protein_coding protein_coding MGP_C3HHeJ_T0089931.1 MGP_C3HHeJ_G0033773.1 mouse_genomes_project 8 108668508 108684524 + MGP_C3HHeJ_P0089931 Has3 protein_coding protein_coding MGP_C3HHeJ_T0088591.1 MGP_C3HHeJ_G0033340.1 mouse_genomes_project 8 66362863 66364884 + MGP_C3HHeJ_P0088591 Tktl2 protein_coding protein_coding MGP_C3HHeJ_T0088592.1 MGP_C3HHeJ_G0033340.1 mouse_genomes_project 8 66362866 66369437 + MGP_C3HHeJ_P0088592 Tktl2 protein_coding protein_coding MGP_C3HHeJ_T0005257.1 MGP_C3HHeJ_G0004451.1 mouse_genomes_project 8 10297749 10301546 - Gm15353 antisense antisense MGP_C3HHeJ_T0005258.1 MGP_C3HHeJ_G0004451.1 mouse_genomes_project 8 10297893 10301536 - Gm15353 antisense antisense MGP_C3HHeJ_T0097943.1 MGP_C3HHeJ_G0036155.1 mouse_genomes_project 8 126390531 126391534 + pseudogene pseudogene MGP_C3HHeJ_T0089523.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92117322 92476856 + MGP_C3HHeJ_P0089523 Fto protein_coding protein_coding MGP_C3HHeJ_T0089524.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92117325 92247319 + Fto protein_coding retained_intron MGP_C3HHeJ_T0089525.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92117348 92332706 + Fto protein_coding retained_intron MGP_C3HHeJ_T0089526.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92117358 92291857 + Fto protein_coding retained_intron MGP_C3HHeJ_T0089527.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92193130 92215235 + MGP_C3HHeJ_P0089527 Fto protein_coding protein_coding MGP_C3HHeJ_T0089528.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92195949 92214859 + MGP_C3HHeJ_P0089528 Fto protein_coding protein_coding MGP_C3HHeJ_T0089529.1 MGP_C3HHeJ_G0033617.1 mouse_genomes_project 8 92270246 92475367 + Fto protein_coding processed_transcript MGP_C3HHeJ_T0015792.1 MGP_C3HHeJ_G0013896.1 mouse_genomes_project 8 82335247 82336861 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087949.1 MGP_C3HHeJ_G0033145.1 mouse_genomes_project 8 20664762 20670400 + MGP_C3HHeJ_P0087949 Dkk4 protein_coding protein_coding MGP_C3HHeJ_T0009023.1 MGP_C3HHeJ_G0007250.1 mouse_genomes_project 8 64882218 64923751 - lincRNA lincRNA MGP_C3HHeJ_T0089209.1 MGP_C3HHeJ_G0033530.1 mouse_genomes_project 8 84531530 84554710 + MGP_C3HHeJ_P0089209 Prkaca protein_coding protein_coding MGP_C3HHeJ_T0002306.1 MGP_C3HHeJ_G0002225.1 mouse_genomes_project 8 124482543 124483341 - TEC TEC MGP_C3HHeJ_T0090175.1 MGP_C3HHeJ_G0033854.1 mouse_genomes_project 8 119294678 119306296 - MGP_C3HHeJ_P0090175 Gcsh protein_coding protein_coding MGP_C3HHeJ_T0090176.1 MGP_C3HHeJ_G0033854.1 mouse_genomes_project 8 119296550 119304134 - Gcsh protein_coding processed_transcript MGP_C3HHeJ_T0090174.1 MGP_C3HHeJ_G0033853.1 mouse_genomes_project 8 119282407 119291786 - MGP_C3HHeJ_P0090174 1700030J22Rik protein_coding protein_coding MGP_C3HHeJ_T0015801.1 MGP_C3HHeJ_G0013905.1 mouse_genomes_project 8 95320986 95321592 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089425.1 MGP_C3HHeJ_G0033590.1 mouse_genomes_project 8 86164363 86181949 - MGP_C3HHeJ_P0089425 Dnaja2 protein_coding protein_coding MGP_C3HHeJ_T0090408.1 MGP_C3HHeJ_G0033915.1 mouse_genomes_project 8 125119050 125124164 + MGP_C3HHeJ_P0090408 Cdt1 protein_coding protein_coding MGP_C3HHeJ_T0089807.1 MGP_C3HHeJ_G0033721.1 mouse_genomes_project 8 106988237 106998485 - MGP_C3HHeJ_P0089807 4931428F04Rik protein_coding protein_coding MGP_C3HHeJ_T0089808.1 MGP_C3HHeJ_G0033721.1 mouse_genomes_project 8 106988237 106998485 - MGP_C3HHeJ_P0089808 4931428F04Rik protein_coding protein_coding MGP_C3HHeJ_T0089210.1 MGP_C3HHeJ_G0033531.1 mouse_genomes_project 8 84558357 84560277 + MGP_C3HHeJ_P0089210 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100921.1 MGP_C3HHeJ_G0039115.1 mouse_genomes_project 8 96722444 96722579 - Gm26265 snoRNA snoRNA MGP_C3HHeJ_T0088420.1 MGP_C3HHeJ_G0033291.1 mouse_genomes_project 8 47065710 47066624 + MGP_C3HHeJ_P0088420 Cldn22 protein_coding protein_coding MGP_C3HHeJ_T0018218.1 MGP_C3HHeJ_G0015465.1 mouse_genomes_project 8 1141358 1186474 - 4932443L11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018219.1 MGP_C3HHeJ_G0015465.1 mouse_genomes_project 8 1157036 1185879 - 4932443L11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0088852.1 MGP_C3HHeJ_G0033414.1 mouse_genomes_project 8 70768154 70772047 - MGP_C3HHeJ_P0088852 Ifi30 protein_coding protein_coding MGP_C3HHeJ_T0088843.1 MGP_C3HHeJ_G0033411.1 mouse_genomes_project 8 70716597 70751211 + MGP_C3HHeJ_P0088843 Pde4c protein_coding protein_coding MGP_C3HHeJ_T0088844.1 MGP_C3HHeJ_G0033411.1 mouse_genomes_project 8 70716941 70756442 + MGP_C3HHeJ_P0088844 Pde4c protein_coding protein_coding MGP_C3HHeJ_T0088845.1 MGP_C3HHeJ_G0033411.1 mouse_genomes_project 8 70716942 70756429 + MGP_C3HHeJ_P0088845 Pde4c protein_coding protein_coding MGP_C3HHeJ_T0088846.1 MGP_C3HHeJ_G0033411.1 mouse_genomes_project 8 70724029 70751058 + Pde4c protein_coding processed_transcript MGP_C3HHeJ_T0088847.1 MGP_C3HHeJ_G0033411.1 mouse_genomes_project 8 70746939 70755629 + Pde4c protein_coding retained_intron MGP_C3HHeJ_T0088848.1 MGP_C3HHeJ_G0033411.1 mouse_genomes_project 8 70753047 70755969 + Pde4c protein_coding retained_intron MGP_C3HHeJ_T0090521.1 MGP_C3HHeJ_G0033947.1 mouse_genomes_project 8 126384663 126385106 + MGP_C3HHeJ_P0090521 protein_coding protein_coding MGP_C3HHeJ_T0088303.1 MGP_C3HHeJ_G0033261.1 mouse_genomes_project 8 44374794 44405202 - MGP_C3HHeJ_P0088303 Klkb1 protein_coding protein_coding MGP_C3HHeJ_T0090528.1 MGP_C3HHeJ_G0033953.1 mouse_genomes_project 8 126769886 126891474 + MGP_C3HHeJ_P0090528 Galnt2 protein_coding protein_coding MGP_C3HHeJ_T0090529.1 MGP_C3HHeJ_G0033953.1 mouse_genomes_project 8 126770003 126880134 + Galnt2 protein_coding processed_transcript MGP_C3HHeJ_T0090530.1 MGP_C3HHeJ_G0033953.1 mouse_genomes_project 8 126840214 126868845 + Galnt2 protein_coding processed_transcript MGP_C3HHeJ_T0090531.1 MGP_C3HHeJ_G0033953.1 mouse_genomes_project 8 126840477 126891475 + Galnt2 protein_coding processed_transcript MGP_C3HHeJ_T0089057.1 MGP_C3HHeJ_G0033479.1 mouse_genomes_project 8 75285509 75324234 + MGP_C3HHeJ_P0089057 Tom1 protein_coding protein_coding MGP_C3HHeJ_T0089058.1 MGP_C3HHeJ_G0033479.1 mouse_genomes_project 8 75285509 75324234 + MGP_C3HHeJ_P0089058 Tom1 protein_coding protein_coding MGP_C3HHeJ_T0089614.1 MGP_C3HHeJ_G0033649.1 mouse_genomes_project 8 95525212 95579516 + MGP_C3HHeJ_P0089614 Rspry1 protein_coding protein_coding MGP_C3HHeJ_T0089615.1 MGP_C3HHeJ_G0033649.1 mouse_genomes_project 8 95525235 95544780 + MGP_C3HHeJ_P0089615 Rspry1 protein_coding protein_coding MGP_C3HHeJ_T0089616.1 MGP_C3HHeJ_G0033649.1 mouse_genomes_project 8 95547899 95551463 + Rspry1 protein_coding retained_intron MGP_C3HHeJ_T0088567.1 MGP_C3HHeJ_G0033332.1 mouse_genomes_project 8 64536680 64647145 - MGP_C3HHeJ_P0088567 Klhl2 protein_coding protein_coding MGP_C3HHeJ_T0087673.1 MGP_C3HHeJ_G0033036.1 mouse_genomes_project 8 5840380 5884824 - MGP_C3HHeJ_P0087673 Efnb2 protein_coding protein_coding MGP_C3HHeJ_T0087674.1 MGP_C3HHeJ_G0033036.1 mouse_genomes_project 8 5843543 5863419 - MGP_C3HHeJ_P0087674 Efnb2 protein_coding protein_coding MGP_C3HHeJ_T0010875.1 MGP_C3HHeJ_G0009008.1 mouse_genomes_project 8 46816117 46816197 + Gm27409 miRNA miRNA MGP_C3HHeJ_T0015794.1 MGP_C3HHeJ_G0013898.1 mouse_genomes_project 8 83887949 83888425 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090228.1 MGP_C3HHeJ_G0033875.1 mouse_genomes_project 8 122091396 122112807 + MGP_C3HHeJ_P0090228 Wfdc1 protein_coding protein_coding MGP_C3HHeJ_T0088110.1 MGP_C3HHeJ_G0033187.1 mouse_genomes_project 8 24346940 24351669 + MGP_C3HHeJ_P0088110 Thap1 protein_coding protein_coding MGP_C3HHeJ_T0088111.1 MGP_C3HHeJ_G0033187.1 mouse_genomes_project 8 24346961 24351504 + MGP_C3HHeJ_P0088111 Thap1 protein_coding protein_coding MGP_C3HHeJ_T0088112.1 MGP_C3HHeJ_G0033187.1 mouse_genomes_project 8 24346983 24348141 + Thap1 protein_coding retained_intron MGP_C3HHeJ_T0089913.1 MGP_C3HHeJ_G0033765.1 mouse_genomes_project 8 107957651 107970284 - MGP_C3HHeJ_P0089913 Slc7a6os protein_coding protein_coding MGP_C3HHeJ_T0088634.1 MGP_C3HHeJ_G0033353.1 mouse_genomes_project 8 68982994 69007860 + MGP_C3HHeJ_P0088634 Atp6v1b2 protein_coding protein_coding MGP_C3HHeJ_T0088635.1 MGP_C3HHeJ_G0033353.1 mouse_genomes_project 8 68983116 69001526 + Atp6v1b2 protein_coding retained_intron MGP_C3HHeJ_T0088636.1 MGP_C3HHeJ_G0033353.1 mouse_genomes_project 8 68983135 68996306 + Atp6v1b2 protein_coding retained_intron MGP_C3HHeJ_T0088637.1 MGP_C3HHeJ_G0033353.1 mouse_genomes_project 8 68983137 68990660 + Atp6v1b2 protein_coding retained_intron MGP_C3HHeJ_T0088638.1 MGP_C3HHeJ_G0033353.1 mouse_genomes_project 8 68996269 68997121 + Atp6v1b2 protein_coding retained_intron MGP_C3HHeJ_T0088639.1 MGP_C3HHeJ_G0033353.1 mouse_genomes_project 8 68997185 69002492 + Atp6v1b2 protein_coding retained_intron MGP_C3HHeJ_T0102328.1 MGP_C3HHeJ_G0040291.1 mouse_genomes_project 8 17209426 17211306 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0097936.1 MGP_C3HHeJ_G0036148.1 mouse_genomes_project 8 95897085 95902173 - pseudogene pseudogene MGP_C3HHeJ_T0087898.1 MGP_C3HHeJ_G0033109.1 mouse_genomes_project 8 16788420 16791210 + MGP_C3HHeJ_P0087898 Defb4 protein_coding protein_coding MGP_C3HHeJ_T0087862.1 MGP_C3HHeJ_G0033095.1 mouse_genomes_project 8 12578963 12649648 + MGP_C3HHeJ_P0087862 Myom2 protein_coding protein_coding MGP_C3HHeJ_T0087863.1 MGP_C3HHeJ_G0033095.1 mouse_genomes_project 8 12580118 12585084 + Myom2 protein_coding processed_transcript MGP_C3HHeJ_T0087864.1 MGP_C3HHeJ_G0033095.1 mouse_genomes_project 8 12581333 12595051 + Myom2 protein_coding retained_intron MGP_C3HHeJ_T0087865.1 MGP_C3HHeJ_G0033095.1 mouse_genomes_project 8 12622737 12625277 + Myom2 protein_coding retained_intron MGP_C3HHeJ_T0087866.1 MGP_C3HHeJ_G0033095.1 mouse_genomes_project 8 12635148 12647268 + Myom2 protein_coding processed_transcript MGP_C3HHeJ_T0088195.1 MGP_C3HHeJ_G0033223.1 mouse_genomes_project 8 33372147 33385407 + MGP_C3HHeJ_P0088195 Dusp4 protein_coding protein_coding MGP_C3HHeJ_T0088394.1 MGP_C3HHeJ_G0033280.1 mouse_genomes_project 8 45911510 46026537 + MGP_C3HHeJ_P0088394 Irf2 protein_coding protein_coding MGP_C3HHeJ_T0089617.1 MGP_C3HHeJ_G0033650.1 mouse_genomes_project 8 95585991 95595079 + MGP_C3HHeJ_P0089617 Arl2bp protein_coding protein_coding MGP_C3HHeJ_T0089618.1 MGP_C3HHeJ_G0033650.1 mouse_genomes_project 8 95586462 95595079 + MGP_C3HHeJ_P0089618 Arl2bp protein_coding protein_coding MGP_C3HHeJ_T0088596.1 MGP_C3HHeJ_G0033344.1 mouse_genomes_project 8 67356824 67358171 + MGP_C3HHeJ_P0088596 Nat1 protein_coding protein_coding MGP_C3HHeJ_T0089646.1 MGP_C3HHeJ_G0033659.1 mouse_genomes_project 8 95830854 95846081 - MGP_C3HHeJ_P0089646 Ccdc102a protein_coding protein_coding MGP_C3HHeJ_T0089647.1 MGP_C3HHeJ_G0033659.1 mouse_genomes_project 8 95841548 95845505 - MGP_C3HHeJ_P0089647 Ccdc102a protein_coding protein_coding MGP_C3HHeJ_T0009062.1 MGP_C3HHeJ_G0007279.1 mouse_genomes_project 8 88149104 88150286 - 1700120C18Rik lincRNA lincRNA MGP_C3HHeJ_T0090187.1 MGP_C3HHeJ_G0033859.1 mouse_genomes_project 8 119841485 119985851 + MGP_C3HHeJ_P0090187 Plcg2 protein_coding protein_coding MGP_C3HHeJ_T0098198.1 MGP_C3HHeJ_G0036410.1 mouse_genomes_project 8 130317724 130317842 + Gm22968 rRNA rRNA MGP_C3HHeJ_T0089188.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84277308 84295402 - MGP_C3HHeJ_P0089188 Adgre5 protein_coding protein_coding MGP_C3HHeJ_T0089189.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84277419 84295245 - MGP_C3HHeJ_P0089189 Adgre5 protein_coding protein_coding MGP_C3HHeJ_T0089190.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84277421 84295249 - MGP_C3HHeJ_P0089190 Adgre5 protein_coding protein_coding MGP_C3HHeJ_T0089191.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84277875 84278888 - Adgre5 protein_coding retained_intron MGP_C3HHeJ_T0089192.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84279305 84282379 - Adgre5 protein_coding retained_intron MGP_C3HHeJ_T0089193.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84281622 84282405 - Adgre5 protein_coding retained_intron MGP_C3HHeJ_T0089194.1 MGP_C3HHeJ_G0033526.1 mouse_genomes_project 8 84287615 84295259 - MGP_C3HHeJ_P0089194 Adgre5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087719.1 MGP_C3HHeJ_G0033057.1 mouse_genomes_project 8 9954327 9985733 - MGP_C3HHeJ_P0087719 protein_coding protein_coding MGP_C3HHeJ_T0009064.1 MGP_C3HHeJ_G0007281.1 mouse_genomes_project 8 88857165 88857641 + 9430002A10Rik lincRNA lincRNA MGP_C3HHeJ_T0009065.1 MGP_C3HHeJ_G0007281.1 mouse_genomes_project 8 88857165 88857635 + 9430002A10Rik lincRNA lincRNA MGP_C3HHeJ_T0089772.1 MGP_C3HHeJ_G0033710.1 mouse_genomes_project 8 106683138 106695583 + MGP_C3HHeJ_P0089772 Ces2h protein_coding protein_coding MGP_C3HHeJ_T0009051.1 MGP_C3HHeJ_G0007274.1 mouse_genomes_project 8 88001754 88020300 - Gm27207 lincRNA lincRNA MGP_C3HHeJ_T0089509.1 MGP_C3HHeJ_G0033615.1 mouse_genomes_project 8 91910215 91929316 - MGP_C3HHeJ_P0089509 Aktip protein_coding protein_coding MGP_C3HHeJ_T0089513.1 MGP_C3HHeJ_G0033615.1 mouse_genomes_project 8 91921673 91932556 - MGP_C3HHeJ_P0089513 Aktip protein_coding protein_coding MGP_C3HHeJ_T0089514.1 MGP_C3HHeJ_G0033615.1 mouse_genomes_project 8 91921673 91932033 - MGP_C3HHeJ_P0089514 Aktip protein_coding protein_coding MGP_C3HHeJ_T0089515.1 MGP_C3HHeJ_G0033615.1 mouse_genomes_project 8 91922642 91932114 - MGP_C3HHeJ_P0089515 Aktip protein_coding protein_coding MGP_C3HHeJ_T0089516.1 MGP_C3HHeJ_G0033615.1 mouse_genomes_project 8 91922804 91932118 - MGP_C3HHeJ_P0089516 Aktip protein_coding protein_coding MGP_C3HHeJ_T0089517.1 MGP_C3HHeJ_G0033615.1 mouse_genomes_project 8 91929249 91930056 - Aktip protein_coding processed_transcript MGP_C3HHeJ_T0090542.1 MGP_C3HHeJ_G0033956.1 mouse_genomes_project 8 127120069 127136555 - MGP_C3HHeJ_P0090542 Agt protein_coding protein_coding MGP_C3HHeJ_T0015788.1 MGP_C3HHeJ_G0013892.1 mouse_genomes_project 8 81410269 81411263 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089940.1 MGP_C3HHeJ_G0033777.1 mouse_genomes_project 8 108842345 108857960 + MGP_C3HHeJ_P0089940 Vps4a protein_coding protein_coding MGP_C3HHeJ_T0089941.1 MGP_C3HHeJ_G0033777.1 mouse_genomes_project 8 108851218 108854886 + Vps4a protein_coding retained_intron MGP_C3HHeJ_T0089942.1 MGP_C3HHeJ_G0033777.1 mouse_genomes_project 8 108854453 108855305 + Vps4a protein_coding retained_intron MGP_C3HHeJ_T0102323.1 MGP_C3HHeJ_G0040286.1 mouse_genomes_project 8 3364 5221 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0087920.1 MGP_C3HHeJ_G0033130.1 mouse_genomes_project 8 19970233 19975841 + MGP_C3HHeJ_P0087920 Fam90a1a protein_coding protein_coding MGP_C3HHeJ_T0089108.1 MGP_C3HHeJ_G0033496.1 mouse_genomes_project 8 79673997 79690686 - MGP_C3HHeJ_P0089108 Mmaa protein_coding unknown_likely_coding MGP_C3HHeJ_T0088201.1 MGP_C3HHeJ_G0033228.1 mouse_genomes_project 8 34399854 34454194 + MGP_C3HHeJ_P0088201 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0089775.1 MGP_C3HHeJ_G0033712.1 mouse_genomes_project 8 106763544 106778612 + MGP_C3HHeJ_P0089775 Ces3b protein_coding protein_coding MGP_C3HHeJ_T0089776.1 MGP_C3HHeJ_G0033712.1 mouse_genomes_project 8 106763551 106778274 + MGP_C3HHeJ_P0089776 Ces3b protein_coding protein_coding MGP_C3HHeJ_T0089777.1 MGP_C3HHeJ_G0033712.1 mouse_genomes_project 8 106773551 106777806 + MGP_C3HHeJ_P0089777 Ces3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089591.1 MGP_C3HHeJ_G0033640.1 mouse_genomes_project 8 95056883 95058385 + MGP_C3HHeJ_P0089591 Mt3 protein_coding protein_coding MGP_C3HHeJ_T0005280.1 MGP_C3HHeJ_G0004467.1 mouse_genomes_project 8 44101007 44106176 - Gm2366 antisense antisense MGP_C3HHeJ_T0010859.1 MGP_C3HHeJ_G0008992.1 mouse_genomes_project 8 10366727 10366857 + Gm38671 miRNA miRNA MGP_C3HHeJ_T0011619.1 MGP_C3HHeJ_G0009752.1 mouse_genomes_project 8 23850794 23851116 + Gm23094 misc_RNA misc_RNA MGP_C3HHeJ_T0090438.1 MGP_C3HHeJ_G0033925.1 mouse_genomes_project 8 125682185 125685075 + MGP_C3HHeJ_P0090438 Rpl13 protein_coding protein_coding MGP_C3HHeJ_T0090439.1 MGP_C3HHeJ_G0033925.1 mouse_genomes_project 8 125682486 125683475 + Rpl13 protein_coding retained_intron MGP_C3HHeJ_T0090440.1 MGP_C3HHeJ_G0033925.1 mouse_genomes_project 8 125682488 125684299 + Rpl13 protein_coding retained_intron MGP_C3HHeJ_T0090441.1 MGP_C3HHeJ_G0033925.1 mouse_genomes_project 8 125682488 125685075 + Rpl13 protein_coding retained_intron MGP_C3HHeJ_T0018226.1 MGP_C3HHeJ_G0015470.1 mouse_genomes_project 8 23714270 23722724 - Gm16159 processed_transcript processed_transcript MGP_C3HHeJ_T0018227.1 MGP_C3HHeJ_G0015470.1 mouse_genomes_project 8 23719318 23720201 - Gm16159 processed_transcript processed_transcript MGP_C3HHeJ_T0010936.1 MGP_C3HHeJ_G0009069.1 mouse_genomes_project 8 125181123 125181234 - Mir6396 miRNA miRNA MGP_C3HHeJ_T0010916.1 MGP_C3HHeJ_G0009049.1 mouse_genomes_project 8 107021697 107021794 - Mir328 miRNA miRNA MGP_C3HHeJ_T0088293.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44016948 44135958 + MGP_C3HHeJ_P0088293 Fat1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088294.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44017173 44135951 + MGP_C3HHeJ_P0088294 Fat1 protein_coding protein_coding MGP_C3HHeJ_T0088295.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44031970 44135951 + MGP_C3HHeJ_P0088295 Fat1 protein_coding protein_coding MGP_C3HHeJ_T0088296.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44117051 44135939 + MGP_C3HHeJ_P0088296 Fat1 protein_coding protein_coding MGP_C3HHeJ_T0088297.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44128226 44134525 + MGP_C3HHeJ_P0088297 Fat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088298.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44128226 44134525 + MGP_C3HHeJ_P0088298 Fat1 protein_coding protein_coding MGP_C3HHeJ_T0088299.1 MGP_C3HHeJ_G0033258.1 mouse_genomes_project 8 44128828 44134194 + Fat1 protein_coding retained_intron MGP_C3HHeJ_T0087814.1 MGP_C3HHeJ_G0033079.1 mouse_genomes_project 8 11171502 11199897 + MGP_C3HHeJ_P0087814 4932443I19Rik protein_coding protein_coding MGP_C3HHeJ_T0010861.1 MGP_C3HHeJ_G0008994.1 mouse_genomes_project 8 10624918 10624986 - Mir1968 miRNA miRNA MGP_C3HHeJ_T0088206.1 MGP_C3HHeJ_G0033231.1 mouse_genomes_project 8 34881624 34916641 - MGP_C3HHeJ_P0088206 Lonrf1 protein_coding protein_coding MGP_C3HHeJ_T0011615.1 MGP_C3HHeJ_G0009748.1 mouse_genomes_project 8 4730112 4730311 + Gm27585 misc_RNA misc_RNA MGP_C3HHeJ_T0090496.1 MGP_C3HHeJ_G0033939.1 mouse_genomes_project 8 126004630 126016005 + MGP_C3HHeJ_P0090496 Tubb3 protein_coding protein_coding MGP_C3HHeJ_T0088571.1 MGP_C3HHeJ_G0033335.1 mouse_genomes_project 8 64788619 64814589 - MGP_C3HHeJ_P0088571 Trim60 protein_coding protein_coding MGP_C3HHeJ_T0010921.1 MGP_C3HHeJ_G0009054.1 mouse_genomes_project 8 110834540 110834619 + Mir3108 miRNA miRNA MGP_C3HHeJ_T0088600.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67552023 67839438 - MGP_C3HHeJ_P0088600 Psd3 protein_coding protein_coding MGP_C3HHeJ_T0088601.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67552023 67839438 - MGP_C3HHeJ_P0088601 Psd3 protein_coding protein_coding MGP_C3HHeJ_T0088602.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67552030 67680984 - MGP_C3HHeJ_P0088602 Psd3 protein_coding protein_coding MGP_C3HHeJ_T0088603.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67558988 67839438 - MGP_C3HHeJ_P0088603 Psd3 protein_coding protein_coding MGP_C3HHeJ_T0088604.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67559822 67775275 - MGP_C3HHeJ_P0088604 Psd3 protein_coding protein_coding MGP_C3HHeJ_T0088605.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67574465 67680922 - MGP_C3HHeJ_P0088605 Psd3 protein_coding protein_coding MGP_C3HHeJ_T0088606.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67659853 67926536 - Psd3 protein_coding retained_intron MGP_C3HHeJ_T0088607.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67741154 67768463 - Psd3 protein_coding processed_transcript MGP_C3HHeJ_T0088608.1 MGP_C3HHeJ_G0033347.1 mouse_genomes_project 8 67767990 67816722 - Psd3 protein_coding retained_intron MGP_C3HHeJ_T0088830.1 MGP_C3HHeJ_G0033401.1 mouse_genomes_project 8 70517567 70574758 + MGP_C3HHeJ_P0088830 Ell protein_coding protein_coding MGP_C3HHeJ_T0090018.1 MGP_C3HHeJ_G0033802.1 mouse_genomes_project 8 111966120 111977590 - MGP_C3HHeJ_P0090018 Chst4 protein_coding protein_coding MGP_C3HHeJ_T0088059.1 MGP_C3HHeJ_G0033172.1 mouse_genomes_project 8 23745404 23765834 - MGP_C3HHeJ_P0088059 Letm2 protein_coding protein_coding MGP_C3HHeJ_T0087925.1 MGP_C3HHeJ_G0033133.1 mouse_genomes_project 8 20074983 20085885 + MGP_C3HHeJ_P0087925 Alg11 protein_coding protein_coding MGP_C3HHeJ_T0087926.1 MGP_C3HHeJ_G0033133.1 mouse_genomes_project 8 20074984 20085885 + MGP_C3HHeJ_P0087926 Alg11 protein_coding protein_coding MGP_C3HHeJ_T0087927.1 MGP_C3HHeJ_G0033133.1 mouse_genomes_project 8 20075002 20079710 + MGP_C3HHeJ_P0087927 Alg11 protein_coding protein_coding MGP_C3HHeJ_T0087928.1 MGP_C3HHeJ_G0033133.1 mouse_genomes_project 8 20083273 20084137 + Alg11 protein_coding processed_transcript MGP_C3HHeJ_T0088024.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22946301 23074269 - MGP_C3HHeJ_P0088024 Adam32 protein_coding protein_coding MGP_C3HHeJ_T0088025.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22946304 22970318 - Adam32 protein_coding retained_intron MGP_C3HHeJ_T0088026.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22946304 22983766 - MGP_C3HHeJ_P0088026 Adam32 protein_coding protein_coding MGP_C3HHeJ_T0088027.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22946307 23074260 - MGP_C3HHeJ_P0088027 Adam32 protein_coding protein_coding MGP_C3HHeJ_T0088028.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22946307 22999716 - MGP_C3HHeJ_P0088028 Adam32 protein_coding protein_coding MGP_C3HHeJ_T0088029.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22946366 22969191 - MGP_C3HHeJ_P0088029 Adam32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088030.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 22947970 23074260 - MGP_C3HHeJ_P0088030 Adam32 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088031.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 23032293 23074246 - MGP_C3HHeJ_P0088031 Adam32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088032.1 MGP_C3HHeJ_G0033165.1 mouse_genomes_project 8 23041794 23074269 - Adam32 protein_coding retained_intron MGP_C3HHeJ_T0089562.1 MGP_C3HHeJ_G0033633.1 mouse_genomes_project 8 94382734 94416901 - MGP_C3HHeJ_P0089562 Ces5a protein_coding protein_coding MGP_C3HHeJ_T0010927.1 MGP_C3HHeJ_G0009060.1 mouse_genomes_project 8 113506366 113506489 + Mir1957b miRNA miRNA MGP_C3HHeJ_T0089547.1 MGP_C3HHeJ_G0033628.1 mouse_genomes_project 8 94035000 94068655 - MGP_C3HHeJ_P0089547 Ces1d protein_coding protein_coding MGP_C3HHeJ_T0089548.1 MGP_C3HHeJ_G0033628.1 mouse_genomes_project 8 94035235 94039243 - Ces1d protein_coding processed_transcript MGP_C3HHeJ_T0089549.1 MGP_C3HHeJ_G0033628.1 mouse_genomes_project 8 94035261 94044560 - Ces1d protein_coding processed_transcript MGP_C3HHeJ_T0089550.1 MGP_C3HHeJ_G0033628.1 mouse_genomes_project 8 94065621 94068594 - Ces1d protein_coding processed_transcript MGP_C3HHeJ_T0009070.1 MGP_C3HHeJ_G0007285.1 mouse_genomes_project 8 92847829 92863580 + Gm28516 lincRNA lincRNA MGP_C3HHeJ_T0015745.1 MGP_C3HHeJ_G0013849.1 mouse_genomes_project 8 10444560 10444830 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097940.1 MGP_C3HHeJ_G0036152.1 mouse_genomes_project 8 123640854 123641944 + pseudogene pseudogene MGP_C3HHeJ_T0088754.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70247520 70251080 + MGP_C3HHeJ_P0088754 Homer3 protein_coding protein_coding MGP_C3HHeJ_T0088755.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70247520 70260135 + MGP_C3HHeJ_P0088755 Homer3 protein_coding protein_coding MGP_C3HHeJ_T0088756.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70247692 70260135 + MGP_C3HHeJ_P0088756 Homer3 protein_coding protein_coding MGP_C3HHeJ_T0088757.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70247727 70250852 + Homer3 protein_coding retained_intron MGP_C3HHeJ_T0088758.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70249794 70260127 + MGP_C3HHeJ_P0088758 Homer3 protein_coding protein_coding MGP_C3HHeJ_T0088759.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70250480 70257514 + Homer3 protein_coding retained_intron MGP_C3HHeJ_T0088760.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70254939 70257379 + Homer3 protein_coding retained_intron MGP_C3HHeJ_T0088761.1 MGP_C3HHeJ_G0033387.1 mouse_genomes_project 8 70256850 70259244 + MGP_C3HHeJ_P0088761 Homer3 protein_coding protein_coding MGP_C3HHeJ_T0087945.1 MGP_C3HHeJ_G0033142.1 mouse_genomes_project 8 20498566 20512831 - MGP_C3HHeJ_P0087945 Smim19 protein_coding protein_coding MGP_C3HHeJ_T0087946.1 MGP_C3HHeJ_G0033142.1 mouse_genomes_project 8 20498566 20512831 - MGP_C3HHeJ_P0087946 Smim19 protein_coding protein_coding MGP_C3HHeJ_T0002303.1 MGP_C3HHeJ_G0002222.1 mouse_genomes_project 8 123006297 123007132 - TEC TEC MGP_C3HHeJ_T0089657.1 MGP_C3HHeJ_G0033664.1 mouse_genomes_project 8 96020278 96039531 + MGP_C3HHeJ_P0089657 Katnb1 protein_coding protein_coding MGP_C3HHeJ_T0089169.1 MGP_C3HHeJ_G0033521.1 mouse_genomes_project 8 84161420 84165170 + MGP_C3HHeJ_P0089169 Dnajb1 protein_coding protein_coding MGP_C3HHeJ_T0010869.1 MGP_C3HHeJ_G0009002.1 mouse_genomes_project 8 23294792 23294901 - Mir8108 miRNA miRNA MGP_C3HHeJ_T0089563.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94702307 94848516 + MGP_C3HHeJ_P0089563 Gnao1 protein_coding protein_coding MGP_C3HHeJ_T0089564.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94702977 94704109 + Gnao1 protein_coding retained_intron MGP_C3HHeJ_T0089565.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94703179 94867172 + MGP_C3HHeJ_P0089565 Gnao1 protein_coding protein_coding MGP_C3HHeJ_T0089566.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94703181 94866741 + MGP_C3HHeJ_P0089566 Gnao1 protein_coding protein_coding MGP_C3HHeJ_T0089567.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94703654 94855602 + Gnao1 protein_coding processed_transcript MGP_C3HHeJ_T0089568.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94703677 94858414 + MGP_C3HHeJ_P0089568 Gnao1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089569.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94791661 94865948 + MGP_C3HHeJ_P0089569 Gnao1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089570.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94847617 94848788 + Gnao1 protein_coding retained_intron MGP_C3HHeJ_T0089571.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94848517 94865845 + MGP_C3HHeJ_P0089571 Gnao1 protein_coding protein_coding MGP_C3HHeJ_T0089572.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94848517 94865866 + MGP_C3HHeJ_P0089572 Gnao1 protein_coding protein_coding MGP_C3HHeJ_T0089573.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94851051 94854685 + Gnao1 protein_coding processed_transcript MGP_C3HHeJ_T0089574.1 MGP_C3HHeJ_G0033634.1 mouse_genomes_project 8 94860628 94864806 + Gnao1 protein_coding retained_intron MGP_C3HHeJ_T0089538.1 MGP_C3HHeJ_G0033623.1 mouse_genomes_project 8 93763033 93764034 + MGP_C3HHeJ_P0089538 Capns2 protein_coding protein_coding MGP_C3HHeJ_T0009027.1 MGP_C3HHeJ_G0007253.1 mouse_genomes_project 8 70782278 70783287 + 2010320M18Rik lincRNA lincRNA MGP_C3HHeJ_T0090200.1 MGP_C3HHeJ_G0033864.1 mouse_genomes_project 8 121749379 121753576 + MGP_C3HHeJ_P0090200 Hsbp1 protein_coding protein_coding MGP_C3HHeJ_T0089247.1 MGP_C3HHeJ_G0033548.1 mouse_genomes_project 8 84833334 84845633 - MGP_C3HHeJ_P0089247 Ccdc130 protein_coding protein_coding MGP_C3HHeJ_T0089248.1 MGP_C3HHeJ_G0033548.1 mouse_genomes_project 8 84833343 84836948 - Ccdc130 protein_coding retained_intron MGP_C3HHeJ_T0089249.1 MGP_C3HHeJ_G0033548.1 mouse_genomes_project 8 84834156 84841859 - MGP_C3HHeJ_P0089249 Ccdc130 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089250.1 MGP_C3HHeJ_G0033548.1 mouse_genomes_project 8 84835437 84837187 - Ccdc130 protein_coding retained_intron MGP_C3HHeJ_T0089251.1 MGP_C3HHeJ_G0033548.1 mouse_genomes_project 8 84838948 84845390 - MGP_C3HHeJ_P0089251 Ccdc130 protein_coding protein_coding MGP_C3HHeJ_T0089252.1 MGP_C3HHeJ_G0033548.1 mouse_genomes_project 8 84839222 84845387 - Ccdc130 protein_coding retained_intron MGP_C3HHeJ_T0015764.1 MGP_C3HHeJ_G0013868.1 mouse_genomes_project 8 34680993 34682572 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009108.1 MGP_C3HHeJ_G0007310.1 mouse_genomes_project 8 123773355 123878565 - Gm26815 lincRNA lincRNA MGP_C3HHeJ_T0089925.1 MGP_C3HHeJ_G0033771.1 mouse_genomes_project 8 108387287 108454764 + MGP_C3HHeJ_P0089925 Cdh1 protein_coding protein_coding MGP_C3HHeJ_T0089926.1 MGP_C3HHeJ_G0033771.1 mouse_genomes_project 8 108387315 108453880 + MGP_C3HHeJ_P0089926 Cdh1 protein_coding protein_coding MGP_C3HHeJ_T0089927.1 MGP_C3HHeJ_G0033771.1 mouse_genomes_project 8 108388079 108438541 + Cdh1 protein_coding processed_transcript MGP_C3HHeJ_T0088625.1 MGP_C3HHeJ_G0033351.1 mouse_genomes_project 8 68763959 68790999 + MGP_C3HHeJ_P0088625 Lpl protein_coding protein_coding MGP_C3HHeJ_T0088626.1 MGP_C3HHeJ_G0033351.1 mouse_genomes_project 8 68764023 68791512 + MGP_C3HHeJ_P0088626 Lpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088627.1 MGP_C3HHeJ_G0033351.1 mouse_genomes_project 8 68764125 68773960 + Lpl protein_coding retained_intron MGP_C3HHeJ_T0088628.1 MGP_C3HHeJ_G0033351.1 mouse_genomes_project 8 68775032 68780106 + Lpl protein_coding processed_transcript MGP_C3HHeJ_T0089847.1 MGP_C3HHeJ_G0033737.1 mouse_genomes_project 8 107329794 107346582 + MGP_C3HHeJ_P0089847 Fam65a protein_coding protein_coding MGP_C3HHeJ_T0089372.1 MGP_C3HHeJ_G0033572.1 mouse_genomes_project 8 85625233 85635048 - MGP_C3HHeJ_P0089372 Best2 protein_coding protein_coding MGP_C3HHeJ_T0015796.1 MGP_C3HHeJ_G0013900.1 mouse_genomes_project 8 85787048 85787273 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099634.1 MGP_C3HHeJ_G0037828.1 mouse_genomes_project 8 45430400 45430497 + Gm24669 snRNA snRNA MGP_C3HHeJ_T0100910.1 MGP_C3HHeJ_G0039104.1 mouse_genomes_project 8 76294241 76294368 - Gm22544 snoRNA snoRNA MGP_C3HHeJ_T0100908.1 MGP_C3HHeJ_G0039102.1 mouse_genomes_project 8 70907622 70907753 - Snora68 snoRNA snoRNA MGP_C3HHeJ_T0088917.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551715 71554771 + Dda1 protein_coding processed_transcript MGP_C3HHeJ_T0088918.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551715 71558626 + Dda1 protein_coding processed_transcript MGP_C3HHeJ_T0088919.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551715 71554900 + Dda1 protein_coding retained_intron MGP_C3HHeJ_T0088920.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551715 71558626 + Dda1 protein_coding processed_transcript MGP_C3HHeJ_T0088921.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551715 71558626 + MGP_C3HHeJ_P0088921 Dda1 protein_coding protein_coding MGP_C3HHeJ_T0088922.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551715 71558626 + MGP_C3HHeJ_P0088922 Dda1 protein_coding protein_coding MGP_C3HHeJ_T0088923.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551721 71558626 + MGP_C3HHeJ_P0088923 Dda1 protein_coding protein_coding MGP_C3HHeJ_T0088924.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551727 71555307 + Dda1 protein_coding retained_intron MGP_C3HHeJ_T0088925.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551727 71557502 + Dda1 protein_coding retained_intron MGP_C3HHeJ_T0088926.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71551801 71555140 + Dda1 protein_coding retained_intron MGP_C3HHeJ_T0088927.1 MGP_C3HHeJ_G0033436.1 mouse_genomes_project 8 71552926 71558626 + Dda1 protein_coding processed_transcript MGP_C3HHeJ_T0089080.1 MGP_C3HHeJ_G0033487.1 mouse_genomes_project 8 77926364 77940217 - MGP_C3HHeJ_P0089080 Tmem184c protein_coding protein_coding MGP_C3HHeJ_T0089081.1 MGP_C3HHeJ_G0033487.1 mouse_genomes_project 8 77933245 77940262 - MGP_C3HHeJ_P0089081 Tmem184c protein_coding protein_coding MGP_C3HHeJ_T0089082.1 MGP_C3HHeJ_G0033487.1 mouse_genomes_project 8 77936740 77940232 - MGP_C3HHeJ_P0089082 Tmem184c protein_coding protein_coding MGP_C3HHeJ_T0099667.1 MGP_C3HHeJ_G0037861.1 mouse_genomes_project 8 124372361 124372468 + Gm24283 snRNA snRNA MGP_C3HHeJ_T0090562.1 MGP_C3HHeJ_G0033964.1 mouse_genomes_project 8 127446930 127476991 + MGP_C3HHeJ_P0090562 Gnpat protein_coding protein_coding MGP_C3HHeJ_T0090563.1 MGP_C3HHeJ_G0033964.1 mouse_genomes_project 8 127446969 127473665 + MGP_C3HHeJ_P0090563 Gnpat protein_coding protein_coding MGP_C3HHeJ_T0090564.1 MGP_C3HHeJ_G0033964.1 mouse_genomes_project 8 127470383 127473986 + Gnpat protein_coding retained_intron MGP_C3HHeJ_T0090565.1 MGP_C3HHeJ_G0033964.1 mouse_genomes_project 8 127470452 127476482 + Gnpat protein_coding retained_intron MGP_C3HHeJ_T0090566.1 MGP_C3HHeJ_G0033964.1 mouse_genomes_project 8 127472434 127473844 + Gnpat protein_coding retained_intron MGP_C3HHeJ_T0090567.1 MGP_C3HHeJ_G0033964.1 mouse_genomes_project 8 127474565 127476552 + Gnpat protein_coding retained_intron MGP_C3HHeJ_T0005305.1 MGP_C3HHeJ_G0004489.1 mouse_genomes_project 8 100175230 100198391 + Gm15679 antisense antisense MGP_C3HHeJ_T0089453.1 MGP_C3HHeJ_G0033597.1 mouse_genomes_project 8 87492891 87536619 - MGP_C3HHeJ_P0089453 N4bp1 protein_coding protein_coding MGP_C3HHeJ_T0002307.1 MGP_C3HHeJ_G0002226.1 mouse_genomes_project 8 126001292 126001945 - TEC TEC MGP_C3HHeJ_T0089123.1 MGP_C3HHeJ_G0033503.1 mouse_genomes_project 8 81071729 81156930 + MGP_C3HHeJ_P0089123 Frem3 protein_coding protein_coding MGP_C3HHeJ_T0089373.1 MGP_C3HHeJ_G0033573.1 mouse_genomes_project 8 85639488 85646668 - MGP_C3HHeJ_P0089373 Asna1 protein_coding protein_coding MGP_C3HHeJ_T0015775.1 MGP_C3HHeJ_G0013879.1 mouse_genomes_project 8 63527000 63528002 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088674.1 MGP_C3HHeJ_G0033367.1 mouse_genomes_project 8 69760096 69769031 + MGP_C3HHeJ_P0088674 Lpar2 protein_coding protein_coding MGP_C3HHeJ_T0088675.1 MGP_C3HHeJ_G0033367.1 mouse_genomes_project 8 69760232 69769032 + MGP_C3HHeJ_P0088675 Lpar2 protein_coding protein_coding MGP_C3HHeJ_T0089786.1 MGP_C3HHeJ_G0033715.1 mouse_genomes_project 8 106931732 106961366 + MGP_C3HHeJ_P0089786 D230025D16Rik protein_coding protein_coding MGP_C3HHeJ_T0089787.1 MGP_C3HHeJ_G0033715.1 mouse_genomes_project 8 106931793 106959438 + D230025D16Rik protein_coding retained_intron MGP_C3HHeJ_T0089788.1 MGP_C3HHeJ_G0033715.1 mouse_genomes_project 8 106931793 106961069 + MGP_C3HHeJ_P0089788 D230025D16Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089789.1 MGP_C3HHeJ_G0033715.1 mouse_genomes_project 8 106931854 106961366 + MGP_C3HHeJ_P0089789 D230025D16Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089790.1 MGP_C3HHeJ_G0033715.1 mouse_genomes_project 8 106937541 106946614 + MGP_C3HHeJ_P0089790 D230025D16Rik protein_coding protein_coding MGP_C3HHeJ_T0089791.1 MGP_C3HHeJ_G0033715.1 mouse_genomes_project 8 106954805 106960078 + D230025D16Rik protein_coding retained_intron MGP_C3HHeJ_T0090054.1 MGP_C3HHeJ_G0033815.1 mouse_genomes_project 8 112927609 112990667 + MGP_C3HHeJ_P0090054 St3gal2 protein_coding protein_coding MGP_C3HHeJ_T0090055.1 MGP_C3HHeJ_G0033815.1 mouse_genomes_project 8 112927609 112988010 + MGP_C3HHeJ_P0090055 St3gal2 protein_coding protein_coding MGP_C3HHeJ_T0090056.1 MGP_C3HHeJ_G0033815.1 mouse_genomes_project 8 112927645 112975179 + St3gal2 protein_coding processed_transcript MGP_C3HHeJ_T0090057.1 MGP_C3HHeJ_G0033815.1 mouse_genomes_project 8 112942644 112975378 + St3gal2 protein_coding processed_transcript MGP_C3HHeJ_T0090058.1 MGP_C3HHeJ_G0033815.1 mouse_genomes_project 8 112951624 112975204 + St3gal2 protein_coding processed_transcript MGP_C3HHeJ_T0018264.1 MGP_C3HHeJ_G0015484.1 mouse_genomes_project 8 100576897 100681876 - Gm15680 processed_transcript processed_transcript MGP_C3HHeJ_T0089463.1 MGP_C3HHeJ_G0033601.1 mouse_genomes_project 8 88800573 88818791 + MGP_C3HHeJ_P0089463 Cnep1r1 protein_coding protein_coding MGP_C3HHeJ_T0089464.1 MGP_C3HHeJ_G0033601.1 mouse_genomes_project 8 88800582 88814545 + Cnep1r1 protein_coding processed_transcript MGP_C3HHeJ_T0089465.1 MGP_C3HHeJ_G0033601.1 mouse_genomes_project 8 88800591 88818795 + MGP_C3HHeJ_P0089465 Cnep1r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089466.1 MGP_C3HHeJ_G0033601.1 mouse_genomes_project 8 88800604 88818166 + Cnep1r1 protein_coding retained_intron MGP_C3HHeJ_T0089467.1 MGP_C3HHeJ_G0033601.1 mouse_genomes_project 8 88800604 88815377 + MGP_C3HHeJ_P0089467 Cnep1r1 protein_coding protein_coding MGP_C3HHeJ_T0089468.1 MGP_C3HHeJ_G0033601.1 mouse_genomes_project 8 88800611 88814760 + MGP_C3HHeJ_P0089468 Cnep1r1 protein_coding protein_coding MGP_C3HHeJ_T0099670.1 MGP_C3HHeJ_G0037864.1 mouse_genomes_project 8 126902924 126903010 + Gm24459 snRNA snRNA MGP_C3HHeJ_T0090164.1 MGP_C3HHeJ_G0033848.1 mouse_genomes_project 8 118785902 118796591 + MGP_C3HHeJ_P0090164 Dynlrb2 protein_coding protein_coding MGP_C3HHeJ_T0015754.1 MGP_C3HHeJ_G0013858.1 mouse_genomes_project 8 18855673 18856409 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099625.1 MGP_C3HHeJ_G0037819.1 mouse_genomes_project 8 20872789 20872901 - Gm24735 snRNA snRNA MGP_C3HHeJ_T0098553.1 MGP_C3HHeJ_G0036753.1 mouse_genomes_project 8 124453905 124454564 - sense_intronic sense_intronic MGP_C3HHeJ_T0088372.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45631797 45701399 + MGP_C3HHeJ_P0088372 Acsl1 protein_coding protein_coding MGP_C3HHeJ_T0088373.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45631855 45681953 + Acsl1 protein_coding retained_intron MGP_C3HHeJ_T0088374.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45631933 45676713 + MGP_C3HHeJ_P0088374 Acsl1 protein_coding protein_coding MGP_C3HHeJ_T0088375.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45656300 45700929 + MGP_C3HHeJ_P0088375 Acsl1 protein_coding protein_coding MGP_C3HHeJ_T0088376.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45656300 45671034 + MGP_C3HHeJ_P0088376 Acsl1 protein_coding protein_coding MGP_C3HHeJ_T0088377.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45658158 45699828 + MGP_C3HHeJ_P0088377 Acsl1 protein_coding protein_coding MGP_C3HHeJ_T0088378.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45692133 45694000 + Acsl1 protein_coding retained_intron MGP_C3HHeJ_T0088379.1 MGP_C3HHeJ_G0033276.1 mouse_genomes_project 8 45696411 45699803 + MGP_C3HHeJ_P0088379 Acsl1 protein_coding protein_coding MGP_C3HHeJ_T0010879.1 MGP_C3HHeJ_G0009012.1 mouse_genomes_project 8 67492716 67492809 - Gm44391 miRNA miRNA MGP_C3HHeJ_T0087592.1 MGP_C3HHeJ_G0033012.1 mouse_genomes_project 8 635817 640797 + MGP_C3HHeJ_P0087592 Trappc5 protein_coding protein_coding MGP_C3HHeJ_T0009082.1 MGP_C3HHeJ_G0007291.1 mouse_genomes_project 8 95345062 95356312 - 9330175E14Rik lincRNA lincRNA MGP_C3HHeJ_T0009083.1 MGP_C3HHeJ_G0007291.1 mouse_genomes_project 8 95351978 95356437 - 9330175E14Rik lincRNA lincRNA MGP_C3HHeJ_T0009084.1 MGP_C3HHeJ_G0007291.1 mouse_genomes_project 8 95355281 95357267 - 9330175E14Rik lincRNA lincRNA MGP_C3HHeJ_T0088948.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71694018 71703649 + MGP_C3HHeJ_P0088948 Fam129c protein_coding protein_coding MGP_C3HHeJ_T0088949.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71694152 71703637 + Fam129c protein_coding retained_intron MGP_C3HHeJ_T0088950.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71695545 71697452 + Fam129c protein_coding processed_transcript MGP_C3HHeJ_T0088951.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71696279 71697946 + Fam129c protein_coding retained_intron MGP_C3HHeJ_T0088952.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71697978 71698655 + Fam129c protein_coding retained_intron MGP_C3HHeJ_T0088953.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71698062 71703637 + Fam129c protein_coding retained_intron MGP_C3HHeJ_T0088954.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71700456 71703284 + MGP_C3HHeJ_P0088954 Fam129c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088955.1 MGP_C3HHeJ_G0033446.1 mouse_genomes_project 8 71700673 71703646 + MGP_C3HHeJ_P0088955 Fam129c protein_coding protein_coding MGP_C3HHeJ_T0018257.1 MGP_C3HHeJ_G0015481.1 mouse_genomes_project 8 85677612 85684764 - A230103J11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018258.1 MGP_C3HHeJ_G0015481.1 mouse_genomes_project 8 85677641 85684747 - A230103J11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0089575.1 MGP_C3HHeJ_G0033635.1 mouse_genomes_project 8 94869377 94910949 - MGP_C3HHeJ_P0089575 Amfr protein_coding protein_coding MGP_C3HHeJ_T0089576.1 MGP_C3HHeJ_G0033635.1 mouse_genomes_project 8 94870691 94872706 - Amfr protein_coding retained_intron MGP_C3HHeJ_T0089577.1 MGP_C3HHeJ_G0033635.1 mouse_genomes_project 8 94870747 94871751 - Amfr protein_coding processed_transcript MGP_C3HHeJ_T0089578.1 MGP_C3HHeJ_G0033635.1 mouse_genomes_project 8 94896727 94910413 - MGP_C3HHeJ_P0089578 Amfr protein_coding protein_coding MGP_C3HHeJ_T0010863.1 MGP_C3HHeJ_G0008996.1 mouse_genomes_project 8 11848460 11848568 + Gm44347 miRNA miRNA MGP_C3HHeJ_T0089062.1 MGP_C3HHeJ_G0033481.1 mouse_genomes_project 8 75369914 75388851 + MGP_C3HHeJ_P0089062 Mcm5 protein_coding protein_coding MGP_C3HHeJ_T0011613.1 MGP_C3HHeJ_G0009746.1 mouse_genomes_project 8 1090238 1090491 - Gm23888 misc_RNA misc_RNA MGP_C3HHeJ_T0089035.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72873828 72923657 + MGP_C3HHeJ_P0089035 Nwd1 protein_coding protein_coding MGP_C3HHeJ_T0089036.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72873839 72937939 + MGP_C3HHeJ_P0089036 Nwd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089037.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72873888 72944664 + MGP_C3HHeJ_P0089037 Nwd1 protein_coding protein_coding MGP_C3HHeJ_T0089038.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72873897 72941809 + MGP_C3HHeJ_P0089038 Nwd1 protein_coding protein_coding MGP_C3HHeJ_T0089039.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72882178 72938009 + MGP_C3HHeJ_P0089039 Nwd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089040.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72885784 72937970 + MGP_C3HHeJ_P0089040 Nwd1 protein_coding protein_coding MGP_C3HHeJ_T0089041.1 MGP_C3HHeJ_G0033473.1 mouse_genomes_project 8 72911748 72923056 + Nwd1 protein_coding processed_transcript MGP_C3HHeJ_T0088169.1 MGP_C3HHeJ_G0033216.1 mouse_genomes_project 8 32264094 32271247 - MGP_C3HHeJ_P0088169 Smim18 protein_coding protein_coding MGP_C3HHeJ_T0100933.1 MGP_C3HHeJ_G0039127.1 mouse_genomes_project 8 124206346 124206425 - Gm23299 snoRNA snoRNA MGP_C3HHeJ_T0089988.1 MGP_C3HHeJ_G0033792.1 mouse_genomes_project 8 111485256 111493407 + MGP_C3HHeJ_P0089988 Txnl4b protein_coding protein_coding MGP_C3HHeJ_T0089989.1 MGP_C3HHeJ_G0033792.1 mouse_genomes_project 8 111488243 111492879 + MGP_C3HHeJ_P0089989 Txnl4b protein_coding protein_coding MGP_C3HHeJ_T0088595.1 MGP_C3HHeJ_G0033343.1 mouse_genomes_project 8 66720910 66751123 + MGP_C3HHeJ_P0088595 Naf1 protein_coding protein_coding MGP_C3HHeJ_T0089005.1 MGP_C3HHeJ_G0033457.1 mouse_genomes_project 8 72339601 72344057 + MGP_C3HHeJ_P0089005 Olfr374 protein_coding protein_coding MGP_C3HHeJ_T0089160.1 MGP_C3HHeJ_G0033516.1 mouse_genomes_project 8 83926458 83971523 + MGP_C3HHeJ_P0089160 Clgn protein_coding protein_coding MGP_C3HHeJ_T0089161.1 MGP_C3HHeJ_G0033516.1 mouse_genomes_project 8 83926469 83969802 + MGP_C3HHeJ_P0089161 Clgn protein_coding protein_coding MGP_C3HHeJ_T0015746.1 MGP_C3HHeJ_G0013850.1 mouse_genomes_project 8 10508022 10508944 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088135.1 MGP_C3HHeJ_G0033202.1 mouse_genomes_project 8 29538532 29546146 + MGP_C3HHeJ_P0088135 Dusp26 protein_coding protein_coding MGP_C3HHeJ_T0088136.1 MGP_C3HHeJ_G0033202.1 mouse_genomes_project 8 29538697 29546145 + MGP_C3HHeJ_P0088136 Dusp26 protein_coding protein_coding MGP_C3HHeJ_T0088137.1 MGP_C3HHeJ_G0033202.1 mouse_genomes_project 8 29538863 29541307 + Dusp26 protein_coding retained_intron MGP_C3HHeJ_T0088138.1 MGP_C3HHeJ_G0033202.1 mouse_genomes_project 8 29540724 29546145 + MGP_C3HHeJ_P0088138 Dusp26 protein_coding protein_coding MGP_C3HHeJ_T0088139.1 MGP_C3HHeJ_G0033202.1 mouse_genomes_project 8 29543062 29545687 + Dusp26 protein_coding processed_transcript MGP_C3HHeJ_T0009028.1 MGP_C3HHeJ_G0007254.1 mouse_genomes_project 8 71024848 71047503 - lincRNA lincRNA MGP_C3HHeJ_T0090062.1 MGP_C3HHeJ_G0033817.1 mouse_genomes_project 8 113023618 113051827 - MGP_C3HHeJ_P0090062 Ddx19b protein_coding protein_coding MGP_C3HHeJ_T0090063.1 MGP_C3HHeJ_G0033817.1 mouse_genomes_project 8 113027089 113057085 - MGP_C3HHeJ_P0090063 Ddx19b protein_coding protein_coding MGP_C3HHeJ_T0089661.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96187282 96258256 - MGP_C3HHeJ_P0089661 Cngb1 protein_coding protein_coding MGP_C3HHeJ_T0089662.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96189218 96230252 - MGP_C3HHeJ_P0089662 Cngb1 protein_coding protein_coding MGP_C3HHeJ_T0089663.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96189224 96230272 - MGP_C3HHeJ_P0089663 Cngb1 protein_coding protein_coding MGP_C3HHeJ_T0089664.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96239113 96255530 - Cngb1 protein_coding retained_intron MGP_C3HHeJ_T0089665.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96239113 96255530 - Cngb1 protein_coding retained_intron MGP_C3HHeJ_T0089666.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96239113 96243374 - Cngb1 protein_coding retained_intron MGP_C3HHeJ_T0089667.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96239113 96258256 - MGP_C3HHeJ_P0089667 Cngb1 protein_coding protein_coding MGP_C3HHeJ_T0089668.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96239113 96244774 - MGP_C3HHeJ_P0089668 Cngb1 protein_coding protein_coding MGP_C3HHeJ_T0089669.1 MGP_C3HHeJ_G0033666.1 mouse_genomes_project 8 96239116 96258241 - Cngb1 protein_coding retained_intron MGP_C3HHeJ_T0090021.1 MGP_C3HHeJ_G0033805.1 mouse_genomes_project 8 112057898 112059889 + MGP_C3HHeJ_P0090021 Gm21964 protein_coding protein_coding MGP_C3HHeJ_T0100897.1 MGP_C3HHeJ_G0039091.1 mouse_genomes_project 8 56146249 56146381 - Gm24375 snoRNA snoRNA MGP_C3HHeJ_T0088867.1 MGP_C3HHeJ_G0033422.1 mouse_genomes_project 8 70894399 70904449 - MGP_C3HHeJ_P0088867 Slc5a5 protein_coding protein_coding MGP_C3HHeJ_T0088593.1 MGP_C3HHeJ_G0033341.1 mouse_genomes_project 8 66533381 66541451 - MGP_C3HHeJ_P0088593 Npy5r protein_coding protein_coding MGP_C3HHeJ_T0010933.1 MGP_C3HHeJ_G0009066.1 mouse_genomes_project 8 123009335 123009394 + Mir7687 miRNA miRNA MGP_C3HHeJ_T0010890.1 MGP_C3HHeJ_G0009023.1 mouse_genomes_project 8 84489709 84489852 - Gm44330 miRNA miRNA MGP_C3HHeJ_T0089592.1 MGP_C3HHeJ_G0033641.1 mouse_genomes_project 8 95076773 95077723 + MGP_C3HHeJ_P0089592 Mt2 protein_coding protein_coding MGP_C3HHeJ_T0015798.1 MGP_C3HHeJ_G0013902.1 mouse_genomes_project 8 89868708 89869027 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089619.1 MGP_C3HHeJ_G0033651.1 mouse_genomes_project 8 95595556 95616712 - MGP_C3HHeJ_P0089619 Pllp protein_coding protein_coding MGP_C3HHeJ_T0089811.1 MGP_C3HHeJ_G0033724.1 mouse_genomes_project 8 107018191 107023957 + MGP_C3HHeJ_P0089811 Elmo3 protein_coding protein_coding MGP_C3HHeJ_T0009110.1 MGP_C3HHeJ_G0007312.1 mouse_genomes_project 8 123951908 123952318 + Gm26784 lincRNA lincRNA MGP_C3HHeJ_T0100922.1 MGP_C3HHeJ_G0039116.1 mouse_genomes_project 8 97321109 97321241 - Gm22780 snoRNA snoRNA MGP_C3HHeJ_T0011621.1 MGP_C3HHeJ_G0009754.1 mouse_genomes_project 8 30014766 30014990 - Gm23539 misc_RNA misc_RNA MGP_C3HHeJ_T0005256.1 MGP_C3HHeJ_G0004450.1 mouse_genomes_project 8 10278288 10295216 - Gm15347 antisense antisense MGP_C3HHeJ_T0089411.1 MGP_C3HHeJ_G0033584.1 mouse_genomes_project 8 85848607 85849546 + MGP_C3HHeJ_P0089411 Olfr371 protein_coding protein_coding MGP_C3HHeJ_T0090557.1 MGP_C3HHeJ_G0033960.1 mouse_genomes_project 8 127297906 127310573 + MGP_C3HHeJ_P0090557 Arv1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088192.1 MGP_C3HHeJ_G0033220.1 mouse_genomes_project 8 32662535 32674027 - MGP_C3HHeJ_P0088192 Leprotl1 protein_coding protein_coding MGP_C3HHeJ_T0089857.1 MGP_C3HHeJ_G0033740.1 mouse_genomes_project 8 107426160 107429049 - MGP_C3HHeJ_P0089857 Acd protein_coding protein_coding MGP_C3HHeJ_T0010942.1 MGP_C3HHeJ_G0009075.1 mouse_genomes_project 8 131105243 131105323 + Mir1903 miRNA miRNA MGP_C3HHeJ_T0087894.1 MGP_C3HHeJ_G0033106.1 mouse_genomes_project 8 16735788 16738041 + MGP_C3HHeJ_P0087894 Spag11b protein_coding protein_coding MGP_C3HHeJ_T0087895.1 MGP_C3HHeJ_G0033106.1 mouse_genomes_project 8 16735827 16737780 + MGP_C3HHeJ_P0087895 Spag11b protein_coding protein_coding MGP_C3HHeJ_T0088807.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70479920 70499441 - MGP_C3HHeJ_P0088807 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088811.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70480098 70504952 - MGP_C3HHeJ_P0088811 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088812.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70488449 70499458 - MGP_C3HHeJ_P0088812 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088813.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70488657 70499557 - MGP_C3HHeJ_P0088813 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088814.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70489180 70499458 - MGP_C3HHeJ_P0088814 Kxd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088815.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70489743 70504952 - MGP_C3HHeJ_P0088815 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088816.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70491618 70499368 - MGP_C3HHeJ_P0088816 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088817.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70494663 70504779 - MGP_C3HHeJ_P0088817 Kxd1 protein_coding protein_coding MGP_C3HHeJ_T0088818.1 MGP_C3HHeJ_G0033399.1 mouse_genomes_project 8 70495377 70499382 - Kxd1 protein_coding retained_intron MGP_C3HHeJ_T0089773.1 MGP_C3HHeJ_G0033711.1 mouse_genomes_project 8 106718355 106730665 + MGP_C3HHeJ_P0089773 Ces3a protein_coding protein_coding MGP_C3HHeJ_T0089774.1 MGP_C3HHeJ_G0033711.1 mouse_genomes_project 8 106718355 106730665 + MGP_C3HHeJ_P0089774 Ces3a protein_coding protein_coding MGP_C3HHeJ_T0087597.1 MGP_C3HHeJ_G0033015.1 mouse_genomes_project 8 706419 712056 - MGP_C3HHeJ_P0087597 Cd209a protein_coding protein_coding MGP_C3HHeJ_T0089313.1 MGP_C3HHeJ_G0033559.1 mouse_genomes_project 8 85449544 85454633 - MGP_C3HHeJ_P0089313 Calr protein_coding protein_coding MGP_C3HHeJ_T0089314.1 MGP_C3HHeJ_G0033559.1 mouse_genomes_project 8 85450288 85452612 - Calr protein_coding retained_intron MGP_C3HHeJ_T0089315.1 MGP_C3HHeJ_G0033559.1 mouse_genomes_project 8 85453132 85454529 - Calr protein_coding retained_intron MGP_C3HHeJ_T0089316.1 MGP_C3HHeJ_G0033559.1 mouse_genomes_project 8 85453446 85454525 - Calr protein_coding retained_intron MGP_C3HHeJ_T0088163.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32252516 32300400 + MGP_C3HHeJ_P0088163 Gtf2e2 protein_coding protein_coding MGP_C3HHeJ_T0088164.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32252725 32300400 + MGP_C3HHeJ_P0088164 Gtf2e2 protein_coding protein_coding MGP_C3HHeJ_T0088165.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32252816 32275910 + MGP_C3HHeJ_P0088165 Gtf2e2 protein_coding protein_coding MGP_C3HHeJ_T0088166.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32252994 32258025 + MGP_C3HHeJ_P0088166 Gtf2e2 protein_coding protein_coding MGP_C3HHeJ_T0088167.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32253022 32300409 + MGP_C3HHeJ_P0088167 Gtf2e2 protein_coding protein_coding MGP_C3HHeJ_T0088168.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32254127 32281943 + MGP_C3HHeJ_P0088168 Gtf2e2 protein_coding protein_coding MGP_C3HHeJ_T0088170.1 MGP_C3HHeJ_G0033215.1 mouse_genomes_project 8 32288426 32300014 + Gtf2e2 protein_coding processed_transcript MGP_C3HHeJ_T0009090.1 MGP_C3HHeJ_G0007296.1 mouse_genomes_project 8 108045010 108062045 + Gm10629 lincRNA lincRNA MGP_C3HHeJ_T0088198.1 MGP_C3HHeJ_G0033226.1 mouse_genomes_project 8 34092899 34117996 - MGP_C3HHeJ_P0088198 Eri1 protein_coding protein_coding MGP_C3HHeJ_T0005272.1 MGP_C3HHeJ_G0004461.1 mouse_genomes_project 8 21206781 21217374 - Gm15816 antisense antisense MGP_C3HHeJ_T0018222.1 MGP_C3HHeJ_G0015467.1 mouse_genomes_project 8 10090317 10091620 + 4931415C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018223.1 MGP_C3HHeJ_G0015467.1 mouse_genomes_project 8 10090558 10097364 + 4931415C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100911.1 MGP_C3HHeJ_G0039105.1 mouse_genomes_project 8 77452271 77452401 - Gm24838 snoRNA snoRNA MGP_C3HHeJ_T0099662.1 MGP_C3HHeJ_G0037856.1 mouse_genomes_project 8 113977281 113977385 + Gm23853 snRNA snRNA MGP_C3HHeJ_T0087899.1 MGP_C3HHeJ_G0033110.1 mouse_genomes_project 8 16816351 16819056 + MGP_C3HHeJ_P0087899 Defb6 protein_coding protein_coding MGP_C3HHeJ_T0005320.1 MGP_C3HHeJ_G0004501.1 mouse_genomes_project 8 116768453 116771846 - Gm16116 antisense antisense MGP_C3HHeJ_T0098552.1 MGP_C3HHeJ_G0036752.1 mouse_genomes_project 8 122988532 122989604 + Gm26971 sense_intronic sense_intronic MGP_C3HHeJ_T0088853.1 MGP_C3HHeJ_G0033415.1 mouse_genomes_project 8 70773553 70782177 - MGP_C3HHeJ_P0088853 Pik3r2 protein_coding protein_coding MGP_C3HHeJ_T0088854.1 MGP_C3HHeJ_G0033415.1 mouse_genomes_project 8 70773838 70774766 - MGP_C3HHeJ_P0088854 Pik3r2 protein_coding protein_coding MGP_C3HHeJ_T0088855.1 MGP_C3HHeJ_G0033415.1 mouse_genomes_project 8 70774017 70775042 - Pik3r2 protein_coding retained_intron MGP_C3HHeJ_T0088856.1 MGP_C3HHeJ_G0033415.1 mouse_genomes_project 8 70777406 70778614 - Pik3r2 protein_coding retained_intron MGP_C3HHeJ_T0088857.1 MGP_C3HHeJ_G0033415.1 mouse_genomes_project 8 70777786 70780151 - MGP_C3HHeJ_P0088857 Pik3r2 protein_coding protein_coding MGP_C3HHeJ_T0088858.1 MGP_C3HHeJ_G0033415.1 mouse_genomes_project 8 70780472 70782143 - Pik3r2 protein_coding processed_transcript MGP_C3HHeJ_T0011614.1 MGP_C3HHeJ_G0009747.1 mouse_genomes_project 8 1255459 1255743 + Gm26102 misc_RNA misc_RNA MGP_C3HHeJ_T0008986.1 MGP_C3HHeJ_G0007220.1 mouse_genomes_project 8 9667274 9667676 + Gm29175 lincRNA lincRNA MGP_C3HHeJ_T0087823.1 MGP_C3HHeJ_G0033083.1 mouse_genomes_project 8 11363214 11368698 - MGP_C3HHeJ_P0087823 Coprs protein_coding protein_coding MGP_C3HHeJ_T0090634.1 MGP_C3HHeJ_G0033984.1 mouse_genomes_project 8 131437714 131490690 + MGP_C3HHeJ_P0090634 Itgb1 protein_coding protein_coding MGP_C3HHeJ_T0090635.1 MGP_C3HHeJ_G0033984.1 mouse_genomes_project 8 131437817 131490107 + MGP_C3HHeJ_P0090635 Itgb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090636.1 MGP_C3HHeJ_G0033984.1 mouse_genomes_project 8 131437930 131468141 + Itgb1 protein_coding retained_intron MGP_C3HHeJ_T0090637.1 MGP_C3HHeJ_G0033984.1 mouse_genomes_project 8 131481822 131489879 + MGP_C3HHeJ_P0090637 Itgb1 protein_coding protein_coding MGP_C3HHeJ_T0089877.1 MGP_C3HHeJ_G0033751.1 mouse_genomes_project 8 107631473 107632930 + MGP_C3HHeJ_P0089877 Nrn1l protein_coding protein_coding MGP_C3HHeJ_T0089878.1 MGP_C3HHeJ_G0033751.1 mouse_genomes_project 8 107631478 107632924 + MGP_C3HHeJ_P0089878 Nrn1l protein_coding protein_coding MGP_C3HHeJ_T0009019.1 MGP_C3HHeJ_G0007246.1 mouse_genomes_project 8 56929446 56937943 + lincRNA lincRNA MGP_C3HHeJ_T0090411.1 MGP_C3HHeJ_G0033918.1 mouse_genomes_project 8 125169753 125174733 + MGP_C3HHeJ_P0090411 Trappc2l protein_coding protein_coding MGP_C3HHeJ_T0015757.1 MGP_C3HHeJ_G0013861.1 mouse_genomes_project 8 20254027 20254318 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088707.1 MGP_C3HHeJ_G0033380.1 mouse_genomes_project 8 70083379 70085791 + MGP_C3HHeJ_P0088707 Nr2c2ap protein_coding protein_coding MGP_C3HHeJ_T0088229.1 MGP_C3HHeJ_G0033239.1 mouse_genomes_project 8 39125358 39201940 + MGP_C3HHeJ_P0088229 Micu3 protein_coding protein_coding MGP_C3HHeJ_T0088230.1 MGP_C3HHeJ_G0033239.1 mouse_genomes_project 8 39126058 39203594 + MGP_C3HHeJ_P0088230 Micu3 protein_coding protein_coding MGP_C3HHeJ_T0088231.1 MGP_C3HHeJ_G0033239.1 mouse_genomes_project 8 39181146 39192881 + Micu3 protein_coding retained_intron MGP_C3HHeJ_T0089158.1 MGP_C3HHeJ_G0033515.1 mouse_genomes_project 8 83883744 83915920 + MGP_C3HHeJ_P0089158 Mgat4d protein_coding protein_coding MGP_C3HHeJ_T0089159.1 MGP_C3HHeJ_G0033515.1 mouse_genomes_project 8 83896093 83918929 + Mgat4d protein_coding processed_transcript MGP_C3HHeJ_T0090229.1 MGP_C3HHeJ_G0033876.1 mouse_genomes_project 8 122127682 122188769 + MGP_C3HHeJ_P0090229 Atp2c2 protein_coding protein_coding MGP_C3HHeJ_T0087966.1 MGP_C3HHeJ_G0033149.1 mouse_genomes_project 8 20837259 20855426 - MGP_C3HHeJ_P0087966 Ap3m2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101487.1 MGP_C3HHeJ_G0039484.1 mouse_genomes_project 8 104004768 104022217 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0088870.1 MGP_C3HHeJ_G0033425.1 mouse_genomes_project 8 70943992 70945598 + MGP_C3HHeJ_P0088870 protein_coding protein_coding MGP_C3HHeJ_T0100918.1 MGP_C3HHeJ_G0039112.1 mouse_genomes_project 8 91857679 91857811 - Gm22428 snoRNA snoRNA MGP_C3HHeJ_T0010910.1 MGP_C3HHeJ_G0009043.1 mouse_genomes_project 8 95424983 95425043 + Mir7072 miRNA miRNA MGP_C3HHeJ_T0099631.1 MGP_C3HHeJ_G0037825.1 mouse_genomes_project 8 36105256 36105358 - Gm25126 snRNA snRNA MGP_C3HHeJ_T0089768.1 MGP_C3HHeJ_G0033707.1 mouse_genomes_project 8 106600140 106608553 + MGP_C3HHeJ_P0089768 Ces2e protein_coding protein_coding MGP_C3HHeJ_T0089769.1 MGP_C3HHeJ_G0033707.1 mouse_genomes_project 8 106600140 106608553 + MGP_C3HHeJ_P0089769 Ces2e protein_coding protein_coding MGP_C3HHeJ_T0088194.1 MGP_C3HHeJ_G0033222.1 mouse_genomes_project 8 32880226 32880671 + MGP_C3HHeJ_P0088194 protein_coding protein_coding MGP_C3HHeJ_T0090569.1 MGP_C3HHeJ_G0033966.1 mouse_genomes_project 8 127484825 127490729 + MGP_C3HHeJ_P0090569 Sprtn protein_coding protein_coding MGP_C3HHeJ_T0005293.1 MGP_C3HHeJ_G0004479.1 mouse_genomes_project 8 68247717 68251573 + 1700125H03Rik antisense antisense MGP_C3HHeJ_T0005294.1 MGP_C3HHeJ_G0004479.1 mouse_genomes_project 8 68247749 68254994 + 1700125H03Rik antisense antisense MGP_C3HHeJ_T0009071.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93161670 93192253 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0009072.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93161670 93191964 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0009073.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93161670 93183003 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0009074.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93161882 93192024 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0009075.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93171772 93191897 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0009077.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93181060 93183003 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0009078.1 MGP_C3HHeJ_G0007286.1 mouse_genomes_project 8 93183064 93192002 - Crnde lincRNA lincRNA MGP_C3HHeJ_T0088041.1 MGP_C3HHeJ_G0033170.1 mouse_genomes_project 8 23290232 23338879 - MGP_C3HHeJ_P0088041 Tacc1 protein_coding protein_coding MGP_C3HHeJ_T0088042.1 MGP_C3HHeJ_G0033170.1 mouse_genomes_project 8 23290232 23338879 - MGP_C3HHeJ_P0088042 Tacc1 protein_coding protein_coding MGP_C3HHeJ_T0087625.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1218489 1227646 + MGP_C3HHeJ_P0087625 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087626.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1218510 1227647 + MGP_C3HHeJ_P0087626 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087627.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1218578 1227647 + MGP_C3HHeJ_P0087627 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087628.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1218578 1227647 + MGP_C3HHeJ_P0087628 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087629.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1218614 1231173 + MGP_C3HHeJ_P0087629 Map2k7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087630.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1219854 1227647 + MGP_C3HHeJ_P0087630 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087631.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1219854 1227646 + MGP_C3HHeJ_P0087631 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087632.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1223013 1225591 + MGP_C3HHeJ_P0087632 Map2k7 protein_coding protein_coding MGP_C3HHeJ_T0087633.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1224206 1225927 + Map2k7 protein_coding processed_transcript MGP_C3HHeJ_T0087634.1 MGP_C3HHeJ_G0033023.1 mouse_genomes_project 8 1224386 1226050 + Map2k7 protein_coding retained_intron MGP_C3HHeJ_T0089854.1 MGP_C3HHeJ_G0033739.1 mouse_genomes_project 8 107414271 107421649 + MGP_C3HHeJ_P0089854 Rltpr protein_coding unknown_likely_coding MGP_C3HHeJ_T0089855.1 MGP_C3HHeJ_G0033739.1 mouse_genomes_project 8 107418907 107426180 + MGP_C3HHeJ_P0089855 Rltpr protein_coding protein_coding MGP_C3HHeJ_T0089856.1 MGP_C3HHeJ_G0033739.1 mouse_genomes_project 8 107422149 107426205 + MGP_C3HHeJ_P0089856 Rltpr protein_coding unknown_likely_coding MGP_C3HHeJ_T0090262.1 MGP_C3HHeJ_G0033884.1 mouse_genomes_project 8 122611939 122623446 - MGP_C3HHeJ_P0090262 Fam92b protein_coding protein_coding MGP_C3HHeJ_T0090263.1 MGP_C3HHeJ_G0033884.1 mouse_genomes_project 8 122612928 122623343 - Fam92b protein_coding retained_intron MGP_C3HHeJ_T0090264.1 MGP_C3HHeJ_G0033884.1 mouse_genomes_project 8 122617282 122623407 - MGP_C3HHeJ_P0090264 Fam92b protein_coding protein_coding MGP_C3HHeJ_T0090265.1 MGP_C3HHeJ_G0033884.1 mouse_genomes_project 8 122620696 122623427 - Fam92b protein_coding retained_intron MGP_C3HHeJ_T0090517.1 MGP_C3HHeJ_G0033945.1 mouse_genomes_project 8 126335389 126364498 + MGP_C3HHeJ_P0090517 Rab4a protein_coding protein_coding MGP_C3HHeJ_T0090518.1 MGP_C3HHeJ_G0033945.1 mouse_genomes_project 8 126335472 126363696 + MGP_C3HHeJ_P0090518 Rab4a protein_coding protein_coding MGP_C3HHeJ_T0015807.1 MGP_C3HHeJ_G0013911.1 mouse_genomes_project 8 101298847 101299350 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090004.1 MGP_C3HHeJ_G0033797.1 mouse_genomes_project 8 111652971 111664325 - MGP_C3HHeJ_P0090004 Atxn1l protein_coding protein_coding MGP_C3HHeJ_T0090023.1 MGP_C3HHeJ_G0033807.1 mouse_genomes_project 8 112177465 112183015 + MGP_C3HHeJ_P0090023 Cmtr2 protein_coding protein_coding MGP_C3HHeJ_T0090024.1 MGP_C3HHeJ_G0033807.1 mouse_genomes_project 8 112179789 112186287 + MGP_C3HHeJ_P0090024 Cmtr2 protein_coding protein_coding MGP_C3HHeJ_T0099657.1 MGP_C3HHeJ_G0037851.1 mouse_genomes_project 8 103858472 103858535 + Gm24602 snRNA snRNA MGP_C3HHeJ_T0097942.1 MGP_C3HHeJ_G0036154.1 mouse_genomes_project 8 125145082 125145468 + pseudogene pseudogene MGP_C3HHeJ_T0015741.1 MGP_C3HHeJ_G0013845.1 mouse_genomes_project 8 1903228 1903718 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010912.1 MGP_C3HHeJ_G0009045.1 mouse_genomes_project 8 97672614 97672690 + Gm24132 miRNA miRNA MGP_C3HHeJ_T0087685.1 MGP_C3HHeJ_G0033044.1 mouse_genomes_project 8 8304819 8326294 - MGP_C3HHeJ_P0087685 Irs2 protein_coding protein_coding MGP_C3HHeJ_T0087921.1 MGP_C3HHeJ_G0033131.1 mouse_genomes_project 8 19981307 19989094 + MGP_C3HHeJ_P0087921 Ccdc70 protein_coding protein_coding MGP_C3HHeJ_T0087922.1 MGP_C3HHeJ_G0033131.1 mouse_genomes_project 8 19982135 19989118 + MGP_C3HHeJ_P0087922 Ccdc70 protein_coding protein_coding MGP_C3HHeJ_T0089085.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78556357 78564036 + MGP_C3HHeJ_P0089085 Ttc29 protein_coding protein_coding MGP_C3HHeJ_T0089086.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78556362 78563894 + MGP_C3HHeJ_P0089086 Ttc29 protein_coding protein_coding MGP_C3HHeJ_T0089087.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78556375 78561079 + Ttc29 protein_coding processed_transcript MGP_C3HHeJ_T0089088.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78556402 78742860 + MGP_C3HHeJ_P0089088 Ttc29 protein_coding protein_coding MGP_C3HHeJ_T0089089.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78556410 78561023 + Ttc29 protein_coding processed_transcript MGP_C3HHeJ_T0089090.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78561854 78742217 + MGP_C3HHeJ_P0089090 Ttc29 protein_coding protein_coding MGP_C3HHeJ_T0089091.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78594452 78619761 + Ttc29 protein_coding retained_intron MGP_C3HHeJ_T0089092.1 MGP_C3HHeJ_G0033489.1 mouse_genomes_project 8 78739538 78742308 + Ttc29 protein_coding processed_transcript MGP_C3HHeJ_T0015814.1 MGP_C3HHeJ_G0013918.1 mouse_genomes_project 8 130281613 130282048 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015786.1 MGP_C3HHeJ_G0013890.1 mouse_genomes_project 8 80139200 80140143 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0087923.1 MGP_C3HHeJ_G0033132.1 mouse_genomes_project 8 20004192 20074568 - MGP_C3HHeJ_P0087923 Atp7b protein_coding protein_coding MGP_C3HHeJ_T0087924.1 MGP_C3HHeJ_G0033132.1 mouse_genomes_project 8 20006061 20074282 - MGP_C3HHeJ_P0087924 Atp7b protein_coding protein_coding MGP_C3HHeJ_T0005309.1 MGP_C3HHeJ_G0004492.1 mouse_genomes_project 8 107286408 107288768 + Gm38250 antisense antisense MGP_C3HHeJ_T0005310.1 MGP_C3HHeJ_G0004492.1 mouse_genomes_project 8 107286435 107301835 + Gm38250 antisense antisense MGP_C3HHeJ_T0089409.1 MGP_C3HHeJ_G0033582.1 mouse_genomes_project 8 85732525 85743454 - MGP_C3HHeJ_P0089409 Zfp791 protein_coding protein_coding MGP_C3HHeJ_T0089489.1 MGP_C3HHeJ_G0033606.1 mouse_genomes_project 8 89222765 89295057 + MGP_C3HHeJ_P0089489 Nkd1 protein_coding protein_coding MGP_C3HHeJ_T0090013.1 MGP_C3HHeJ_G0033800.1 mouse_genomes_project 8 111878748 111893779 - MGP_C3HHeJ_P0090013 Marveld3 protein_coding protein_coding MGP_C3HHeJ_T0090014.1 MGP_C3HHeJ_G0033800.1 mouse_genomes_project 8 111883721 111893814 - MGP_C3HHeJ_P0090014 Marveld3 protein_coding protein_coding MGP_C3HHeJ_T0090015.1 MGP_C3HHeJ_G0033800.1 mouse_genomes_project 8 111891241 111893664 - Marveld3 protein_coding retained_intron MGP_C3HHeJ_T0088655.1 MGP_C3HHeJ_G0033360.1 mouse_genomes_project 8 69594530 69602604 + Zfp964 protein_coding retained_intron MGP_C3HHeJ_T0088656.1 MGP_C3HHeJ_G0033360.1 mouse_genomes_project 8 69594543 69607653 + MGP_C3HHeJ_P0088656 Zfp964 protein_coding protein_coding MGP_C3HHeJ_T0088657.1 MGP_C3HHeJ_G0033360.1 mouse_genomes_project 8 69598991 69603885 + MGP_C3HHeJ_P0088657 Zfp964 protein_coding protein_coding MGP_C3HHeJ_T0009007.1 MGP_C3HHeJ_G0007235.1 mouse_genomes_project 8 32568502 32575743 + Gm9951 lincRNA lincRNA MGP_C3HHeJ_T0009008.1 MGP_C3HHeJ_G0007235.1 mouse_genomes_project 8 32574516 32576949 + Gm9951 lincRNA lincRNA MGP_C3HHeJ_T0088480.1 MGP_C3HHeJ_G0033309.1 mouse_genomes_project 8 56918258 56921793 + MGP_C3HHeJ_P0088480 Hand2 protein_coding protein_coding MGP_C3HHeJ_T0098549.1 MGP_C3HHeJ_G0036749.1 mouse_genomes_project 8 67673673 67674063 - sense_intronic sense_intronic MGP_C3HHeJ_T0087910.1 MGP_C3HHeJ_G0033120.1 mouse_genomes_project 8 19657414 19658978 - MGP_C3HHeJ_P0087910 protein_coding protein_coding MGP_C3HHeJ_T0098554.1 MGP_C3HHeJ_G0036754.1 mouse_genomes_project 8 125619513 125622249 + 2810013P06Rik sense_intronic sense_intronic MGP_C3HHeJ_T0099637.1 MGP_C3HHeJ_G0037831.1 mouse_genomes_project 8 53007628 53007690 + Gm27964 snRNA snRNA MGP_C3HHeJ_T0088116.1 MGP_C3HHeJ_G0033190.1 mouse_genomes_project 8 25282077 25295641 + MGP_C3HHeJ_P0088116 Prosc protein_coding protein_coding MGP_C3HHeJ_T0088117.1 MGP_C3HHeJ_G0033190.1 mouse_genomes_project 8 25282077 25289749 + MGP_C3HHeJ_P0088117 Prosc protein_coding protein_coding MGP_C3HHeJ_T0088597.1 MGP_C3HHeJ_G0033345.1 mouse_genomes_project 8 67360933 67368641 + MGP_C3HHeJ_P0088597 Nat2 protein_coding protein_coding MGP_C3HHeJ_T0088598.1 MGP_C3HHeJ_G0033345.1 mouse_genomes_project 8 67361014 67368645 + MGP_C3HHeJ_P0088598 Nat2 protein_coding protein_coding MGP_C3HHeJ_T0087935.1 MGP_C3HHeJ_G0033136.1 mouse_genomes_project 8 20186031 20207486 - MGP_C3HHeJ_P0087935 Ckap2 protein_coding protein_coding MGP_C3HHeJ_T0088801.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70478973 70483739 - MGP_C3HHeJ_P0088801 Uba52 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088802.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479911 70483669 - MGP_C3HHeJ_P0088802 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0088803.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479911 70483895 - MGP_C3HHeJ_P0088803 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0088804.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479911 70483664 - MGP_C3HHeJ_P0088804 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0088805.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479912 70483693 - Uba52 protein_coding retained_intron MGP_C3HHeJ_T0088806.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479914 70483731 - MGP_C3HHeJ_P0088806 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0088808.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479976 70484115 - MGP_C3HHeJ_P0088808 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0088809.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70479980 70482955 - MGP_C3HHeJ_P0088809 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0088810.1 MGP_C3HHeJ_G0033398.1 mouse_genomes_project 8 70480078 70483277 - MGP_C3HHeJ_P0088810 Uba52 protein_coding protein_coding MGP_C3HHeJ_T0090081.1 MGP_C3HHeJ_G0033821.1 mouse_genomes_project 8 113190368 113302594 - MGP_C3HHeJ_P0090081 Glg1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090082.1 MGP_C3HHeJ_G0033821.1 mouse_genomes_project 8 113191485 113302641 - MGP_C3HHeJ_P0090082 Glg1 protein_coding protein_coding MGP_C3HHeJ_T0090083.1 MGP_C3HHeJ_G0033821.1 mouse_genomes_project 8 113194589 113214846 - MGP_C3HHeJ_P0090083 Glg1 protein_coding protein_coding MGP_C3HHeJ_T0090084.1 MGP_C3HHeJ_G0033821.1 mouse_genomes_project 8 113194629 113302625 - MGP_C3HHeJ_P0090084 Glg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090085.1 MGP_C3HHeJ_G0033821.1 mouse_genomes_project 8 113194962 113302641 - MGP_C3HHeJ_P0090085 Glg1 protein_coding protein_coding MGP_C3HHeJ_T0088910.1 MGP_C3HHeJ_G0033433.1 mouse_genomes_project 8 71481405 71485276 + MGP_C3HHeJ_P0088910 Ankle1 protein_coding protein_coding MGP_C3HHeJ_T0088911.1 MGP_C3HHeJ_G0033433.1 mouse_genomes_project 8 71481411 71485240 + Ankle1 protein_coding retained_intron MGP_C3HHeJ_T0088912.1 MGP_C3HHeJ_G0033433.1 mouse_genomes_project 8 71481417 71484874 + Ankle1 protein_coding retained_intron MGP_C3HHeJ_T0088913.1 MGP_C3HHeJ_G0033433.1 mouse_genomes_project 8 71481419 71484881 + MGP_C3HHeJ_P0088913 Ankle1 protein_coding protein_coding MGP_C3HHeJ_T0088914.1 MGP_C3HHeJ_G0033433.1 mouse_genomes_project 8 71483086 71484553 + Ankle1 protein_coding retained_intron MGP_C3HHeJ_T0089297.1 MGP_C3HHeJ_G0033554.1 mouse_genomes_project 8 85299355 85302613 + MGP_C3HHeJ_P0089297 Lyl1 protein_coding protein_coding MGP_C3HHeJ_T0089076.1 MGP_C3HHeJ_G0033486.1 mouse_genomes_project 8 77871284 77902770 + MGP_C3HHeJ_P0089076 Prmt9 protein_coding protein_coding MGP_C3HHeJ_T0089077.1 MGP_C3HHeJ_G0033486.1 mouse_genomes_project 8 77871294 77885532 + Prmt9 protein_coding retained_intron MGP_C3HHeJ_T0089078.1 MGP_C3HHeJ_G0033486.1 mouse_genomes_project 8 77871297 77902770 + MGP_C3HHeJ_P0089078 Prmt9 protein_coding protein_coding MGP_C3HHeJ_T0089079.1 MGP_C3HHeJ_G0033486.1 mouse_genomes_project 8 77885217 77886646 + Prmt9 protein_coding retained_intron MGP_C3HHeJ_T0010873.1 MGP_C3HHeJ_G0009006.1 mouse_genomes_project 8 37073764 37073834 - Mir383 miRNA miRNA MGP_C3HHeJ_T0090117.1 MGP_C3HHeJ_G0033830.1 mouse_genomes_project 8 113803329 113824991 - MGP_C3HHeJ_P0090117 Bcar1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090118.1 MGP_C3HHeJ_G0033830.1 mouse_genomes_project 8 113803346 113836789 - MGP_C3HHeJ_P0090118 Bcar1 protein_coding protein_coding MGP_C3HHeJ_T0089987.1 MGP_C3HHeJ_G0033791.1 mouse_genomes_project 8 111467388 111484966 - MGP_C3HHeJ_P0089987 Dhx38 protein_coding protein_coding MGP_C3HHeJ_T0010938.1 MGP_C3HHeJ_G0009071.1 mouse_genomes_project 8 125711413 125711480 + Mir7080 miRNA miRNA MGP_C3HHeJ_T0087827.1 MGP_C3HHeJ_G0033086.1 mouse_genomes_project 8 11431984 11457843 - MGP_C3HHeJ_P0087827 Tdrp protein_coding protein_coding MGP_C3HHeJ_T0087828.1 MGP_C3HHeJ_G0033086.1 mouse_genomes_project 8 11432105 11433363 - Tdrp protein_coding processed_transcript MGP_C3HHeJ_T0087829.1 MGP_C3HHeJ_G0033086.1 mouse_genomes_project 8 11433731 11441948 - Tdrp protein_coding processed_transcript MGP_C3HHeJ_T0087830.1 MGP_C3HHeJ_G0033086.1 mouse_genomes_project 8 11434088 11458098 - MGP_C3HHeJ_P0087830 Tdrp protein_coding protein_coding MGP_C3HHeJ_T0087831.1 MGP_C3HHeJ_G0033086.1 mouse_genomes_project 8 11455681 11457809 - Tdrp protein_coding retained_intron MGP_C3HHeJ_T0088896.1 MGP_C3HHeJ_G0033429.1 mouse_genomes_project 8 71446329 71449437 + MGP_C3HHeJ_P0088896 Ocel1 protein_coding protein_coding MGP_C3HHeJ_T0088897.1 MGP_C3HHeJ_G0033429.1 mouse_genomes_project 8 71446370 71448738 + MGP_C3HHeJ_P0088897 Ocel1 protein_coding protein_coding MGP_C3HHeJ_T0088898.1 MGP_C3HHeJ_G0033429.1 mouse_genomes_project 8 71446377 71454416 + MGP_C3HHeJ_P0088898 Ocel1 protein_coding protein_coding MGP_C3HHeJ_T0088899.1 MGP_C3HHeJ_G0033429.1 mouse_genomes_project 8 71447521 71448004 + Ocel1 protein_coding retained_intron MGP_C3HHeJ_T0097933.1 MGP_C3HHeJ_G0036145.1 mouse_genomes_project 8 80104300 80106638 - pseudogene pseudogene MGP_C3HHeJ_T0089810.1 MGP_C3HHeJ_G0033723.1 mouse_genomes_project 8 107006619 107017960 + MGP_C3HHeJ_P0089810 E2f4 protein_coding protein_coding MGP_C3HHeJ_T0010857.1 MGP_C3HHeJ_G0008990.1 mouse_genomes_project 8 9784552 9784638 + Gm25239 miRNA miRNA MGP_C3HHeJ_T0097934.1 MGP_C3HHeJ_G0036146.1 mouse_genomes_project 8 88821763 88822194 - pseudogene pseudogene MGP_C3HHeJ_T0008998.1 MGP_C3HHeJ_G0007229.1 mouse_genomes_project 8 25892292 25910267 + Gm1698 lincRNA lincRNA MGP_C3HHeJ_T0098588.1 MGP_C3HHeJ_G0036783.1 mouse_genomes_project 8 9773983 9826955 + Gm5607 sense_overlapping sense_overlapping MGP_C3HHeJ_T0098589.1 MGP_C3HHeJ_G0036783.1 mouse_genomes_project 8 9773983 9826976 + Gm5607 sense_overlapping sense_overlapping MGP_C3HHeJ_T0087999.1 MGP_C3HHeJ_G0033159.1 mouse_genomes_project 8 22547249 22549054 - MGP_C3HHeJ_P0087999 1810011O10Rik protein_coding protein_coding MGP_C3HHeJ_T0005335.1 MGP_C3HHeJ_G0004515.1 mouse_genomes_project 8 127826835 127829752 - Gm16237 antisense antisense MGP_C3HHeJ_T0090537.1 MGP_C3HHeJ_G0033955.1 mouse_genomes_project 8 127077968 127115056 + MGP_C3HHeJ_P0090537 Cog2 protein_coding protein_coding MGP_C3HHeJ_T0090538.1 MGP_C3HHeJ_G0033955.1 mouse_genomes_project 8 127078005 127087117 + MGP_C3HHeJ_P0090538 Cog2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090539.1 MGP_C3HHeJ_G0033955.1 mouse_genomes_project 8 127078006 127102961 + Cog2 protein_coding retained_intron MGP_C3HHeJ_T0090540.1 MGP_C3HHeJ_G0033955.1 mouse_genomes_project 8 127078020 127087089 + MGP_C3HHeJ_P0090540 Cog2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090541.1 MGP_C3HHeJ_G0033955.1 mouse_genomes_project 8 127092394 127101579 + Cog2 protein_coding retained_intron MGP_C3HHeJ_T0088542.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61614510 61654939 + MGP_C3HHeJ_P0088542 Ddx60 protein_coding protein_coding MGP_C3HHeJ_T0088543.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61614512 61732427 + MGP_C3HHeJ_P0088543 Ddx60 protein_coding protein_coding MGP_C3HHeJ_T0088544.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61614512 61732433 + MGP_C3HHeJ_P0088544 Ddx60 protein_coding protein_coding MGP_C3HHeJ_T0088545.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61614512 61628127 + MGP_C3HHeJ_P0088545 Ddx60 protein_coding protein_coding MGP_C3HHeJ_T0088546.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61677888 61682058 + Ddx60 protein_coding retained_intron MGP_C3HHeJ_T0088547.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61715006 61717871 + Ddx60 protein_coding retained_intron MGP_C3HHeJ_T0088548.1 MGP_C3HHeJ_G0033325.1 mouse_genomes_project 8 61719081 61726949 + Ddx60 protein_coding retained_intron MGP_C3HHeJ_T0098196.1 MGP_C3HHeJ_G0036408.1 mouse_genomes_project 8 76910241 76910369 - Gm27355 rRNA rRNA MGP_C3HHeJ_T0088776.1 MGP_C3HHeJ_G0033390.1 mouse_genomes_project 8 70282042 70298170 + MGP_C3HHeJ_P0088776 protein_coding protein_coding MGP_C3HHeJ_T0088777.1 MGP_C3HHeJ_G0033390.1 mouse_genomes_project 8 70282042 70298175 + MGP_C3HHeJ_P0088777 protein_coding protein_coding MGP_C3HHeJ_T0088778.1 MGP_C3HHeJ_G0033390.1 mouse_genomes_project 8 70284618 70288960 + protein_coding retained_intron MGP_C3HHeJ_T0088836.1 MGP_C3HHeJ_G0033406.1 mouse_genomes_project 8 70631206 70644717 - MGP_C3HHeJ_P0088836 Pgpep1 protein_coding protein_coding MGP_C3HHeJ_T0088900.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71449171 71456950 - Nr2f6 protein_coding processed_transcript MGP_C3HHeJ_T0088901.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71449175 71457004 - MGP_C3HHeJ_P0088901 Nr2f6 protein_coding protein_coding MGP_C3HHeJ_T0088902.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71449682 71450845 - Nr2f6 protein_coding processed_transcript MGP_C3HHeJ_T0088903.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71449707 71450845 - Nr2f6 protein_coding processed_transcript MGP_C3HHeJ_T0088904.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71450172 71450845 - Nr2f6 protein_coding processed_transcript MGP_C3HHeJ_T0088905.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71450806 71455953 - Nr2f6 protein_coding processed_transcript MGP_C3HHeJ_T0088906.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71450806 71456134 - MGP_C3HHeJ_P0088906 Nr2f6 protein_coding protein_coding MGP_C3HHeJ_T0088907.1 MGP_C3HHeJ_G0033430.1 mouse_genomes_project 8 71450873 71456221 - MGP_C3HHeJ_P0088907 Nr2f6 protein_coding protein_coding MGP_C3HHeJ_T0090095.1 MGP_C3HHeJ_G0033825.1 mouse_genomes_project 8 113504950 113591672 - MGP_C3HHeJ_P0090095 Wdr59 protein_coding protein_coding MGP_C3HHeJ_T0090096.1 MGP_C3HHeJ_G0033825.1 mouse_genomes_project 8 113504950 113591672 - MGP_C3HHeJ_P0090096 Wdr59 protein_coding protein_coding MGP_C3HHeJ_T0088132.1 MGP_C3HHeJ_G0033199.1 mouse_genomes_project 8 25731391 25775762 + MGP_C3HHeJ_P0088132 protein_coding protein_coding MGP_C3HHeJ_T0011624.1 MGP_C3HHeJ_G0009757.1 mouse_genomes_project 8 64725907 64725998 + Gm26210 misc_RNA misc_RNA MGP_C3HHeJ_T0090497.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027920 126049668 + MGP_C3HHeJ_P0090497 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090498.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027920 126045747 + MGP_C3HHeJ_P0090498 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090499.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027920 126049668 + MGP_C3HHeJ_P0090499 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090500.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027930 126038108 + MGP_C3HHeJ_P0090500 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090501.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027939 126049668 + MGP_C3HHeJ_P0090501 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090502.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027942 126038044 + MGP_C3HHeJ_P0090502 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090503.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126027946 126040766 + MGP_C3HHeJ_P0090503 Def8 protein_coding protein_coding MGP_C3HHeJ_T0090504.1 MGP_C3HHeJ_G0033940.1 mouse_genomes_project 8 126028242 126049660 + MGP_C3HHeJ_P0090504 Def8 protein_coding protein_coding MGP_C3HHeJ_T0088937.1 MGP_C3HHeJ_G0033439.1 mouse_genomes_project 8 71580666 71595860 - MGP_C3HHeJ_P0088937 Plvap protein_coding protein_coding MGP_C3HHeJ_T0087890.1 MGP_C3HHeJ_G0033102.1 mouse_genomes_project 8 16562487 16567308 - MGP_C3HHeJ_P0087890 Defb37 protein_coding protein_coding MGP_C3HHeJ_T0100935.1 MGP_C3HHeJ_G0039129.1 mouse_genomes_project 8 129631671 129631805 - Gm26397 snoRNA snoRNA MGP_C3HHeJ_T0087911.1 MGP_C3HHeJ_G0033121.1 mouse_genomes_project 8 19758821 19774333 + MGP_C3HHeJ_P0087911 Defb1 protein_coding protein_coding MGP_C3HHeJ_T0090027.1 MGP_C3HHeJ_G0033809.1 mouse_genomes_project 8 112608582 112712223 + MGP_C3HHeJ_P0090027 Vac14 protein_coding protein_coding MGP_C3HHeJ_T0005303.1 MGP_C3HHeJ_G0004487.1 mouse_genomes_project 8 92428892 92437174 - Gm3235 antisense antisense MGP_C3HHeJ_T0089806.1 MGP_C3HHeJ_G0033720.1 mouse_genomes_project 8 106984274 106990419 + MGP_C3HHeJ_P0089806 Nol3 protein_coding protein_coding MGP_C3HHeJ_T0088353.1 MGP_C3HHeJ_G0033271.1 mouse_genomes_project 8 45143005 45180729 + MGP_C3HHeJ_P0088353 Lrp2bp protein_coding protein_coding MGP_C3HHeJ_T0088354.1 MGP_C3HHeJ_G0033271.1 mouse_genomes_project 8 45143010 45180460 + MGP_C3HHeJ_P0088354 Lrp2bp protein_coding protein_coding MGP_C3HHeJ_T0088355.1 MGP_C3HHeJ_G0033271.1 mouse_genomes_project 8 45158890 45182551 + MGP_C3HHeJ_P0088355 Lrp2bp protein_coding protein_coding MGP_C3HHeJ_T0088356.1 MGP_C3HHeJ_G0033271.1 mouse_genomes_project 8 45158899 45180717 + MGP_C3HHeJ_P0088356 Lrp2bp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088357.1 MGP_C3HHeJ_G0033271.1 mouse_genomes_project 8 45160038 45171717 + Lrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0088358.1 MGP_C3HHeJ_G0033271.1 mouse_genomes_project 8 45175144 45182522 + Lrp2bp protein_coding processed_transcript MGP_C3HHeJ_T0090409.1 MGP_C3HHeJ_G0033916.1 mouse_genomes_project 8 125125673 125127945 - MGP_C3HHeJ_P0090409 Aprt protein_coding protein_coding MGP_C3HHeJ_T0088221.1 MGP_C3HHeJ_G0033234.1 mouse_genomes_project 8 35711298 35713225 + MGP_C3HHeJ_P0088221 AI429214 protein_coding protein_coding MGP_C3HHeJ_T0011618.1 MGP_C3HHeJ_G0009751.1 mouse_genomes_project 8 9744627 9744944 + Gm22207 misc_RNA misc_RNA MGP_C3HHeJ_T0089120.1 MGP_C3HHeJ_G0033501.1 mouse_genomes_project 8 80402765 80426970 - Hhip protein_coding processed_transcript MGP_C3HHeJ_T0089121.1 MGP_C3HHeJ_G0033501.1 mouse_genomes_project 8 80406995 80497892 - MGP_C3HHeJ_P0089121 Hhip protein_coding protein_coding MGP_C3HHeJ_T0088403.1 MGP_C3HHeJ_G0033284.1 mouse_genomes_project 8 46710880 46756753 - MGP_C3HHeJ_P0088403 Trappc11 protein_coding protein_coding MGP_C3HHeJ_T0088404.1 MGP_C3HHeJ_G0033284.1 mouse_genomes_project 8 46710893 46748303 - Trappc11 protein_coding retained_intron MGP_C3HHeJ_T0088405.1 MGP_C3HHeJ_G0033284.1 mouse_genomes_project 8 46710894 46756756 - Trappc11 protein_coding retained_intron MGP_C3HHeJ_T0088406.1 MGP_C3HHeJ_G0033284.1 mouse_genomes_project 8 46725751 46732855 - MGP_C3HHeJ_P0088406 Trappc11 protein_coding protein_coding MGP_C3HHeJ_T0088407.1 MGP_C3HHeJ_G0033284.1 mouse_genomes_project 8 46747942 46751316 - Trappc11 protein_coding retained_intron MGP_C3HHeJ_T0089842.1 MGP_C3HHeJ_G0033735.1 mouse_genomes_project 8 107242446 107286132 - MGP_C3HHeJ_P0089842 Atp6v0d1 protein_coding protein_coding MGP_C3HHeJ_T0089843.1 MGP_C3HHeJ_G0033735.1 mouse_genomes_project 8 107248632 107257458 - Atp6v0d1 protein_coding retained_intron MGP_C3HHeJ_T0090317.1 MGP_C3HHeJ_G0033895.1 mouse_genomes_project 8 123640854 123643791 + MGP_C3HHeJ_P0090317 Foxl1 protein_coding protein_coding MGP_C3HHeJ_T0010891.1 MGP_C3HHeJ_G0009024.1 mouse_genomes_project 8 84565498 84565635 + Mir8111 miRNA miRNA MGP_C3HHeJ_T0005323.1 MGP_C3HHeJ_G0004504.1 mouse_genomes_project 8 117956561 117958750 + Gm15655 antisense antisense MGP_C3HHeJ_T0018248.1 MGP_C3HHeJ_G0015477.1 mouse_genomes_project 8 72377890 72394782 - Gm16091 processed_transcript processed_transcript MGP_C3HHeJ_T0005284.1 MGP_C3HHeJ_G0004471.1 mouse_genomes_project 8 54122334 54154819 - 5330439A09Rik antisense antisense MGP_C3HHeJ_T0088972.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71806913 71819720 - MGP_C3HHeJ_P0088972 Fcho1 protein_coding protein_coding MGP_C3HHeJ_T0088973.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71806920 71824127 - MGP_C3HHeJ_P0088973 Fcho1 protein_coding protein_coding MGP_C3HHeJ_T0088974.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71806946 71824077 - Fcho1 protein_coding retained_intron MGP_C3HHeJ_T0088975.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71807179 71824077 - MGP_C3HHeJ_P0088975 Fcho1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088976.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71808163 71809633 - Fcho1 protein_coding retained_intron MGP_C3HHeJ_T0088977.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71808215 71810706 - Fcho1 protein_coding retained_intron MGP_C3HHeJ_T0088978.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71811066 71814068 - MGP_C3HHeJ_P0088978 Fcho1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088979.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71812874 71815120 - Fcho1 protein_coding retained_intron MGP_C3HHeJ_T0088980.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71814281 71824115 - MGP_C3HHeJ_P0088980 Fcho1 protein_coding protein_coding MGP_C3HHeJ_T0088981.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71814376 71820278 - Fcho1 protein_coding processed_transcript MGP_C3HHeJ_T0088982.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71815301 71824058 - Fcho1 protein_coding retained_intron MGP_C3HHeJ_T0088983.1 MGP_C3HHeJ_G0033452.1 mouse_genomes_project 8 71815699 71821760 - MGP_C3HHeJ_P0088983 Fcho1 protein_coding protein_coding MGP_C3HHeJ_T0008981.1 MGP_C3HHeJ_G0007216.1 mouse_genomes_project 8 8238378 8242409 - 3930402G23Rik lincRNA lincRNA MGP_C3HHeJ_T0089408.1 MGP_C3HHeJ_G0033581.1 mouse_genomes_project 8 85708040 85722795 + MGP_C3HHeJ_P0089408 Man2b1 protein_coding protein_coding MGP_C3HHeJ_T0002288.1 MGP_C3HHeJ_G0002208.1 mouse_genomes_project 8 10705387 10706473 - TEC TEC MGP_C3HHeJ_T0088465.1 MGP_C3HHeJ_G0033304.1 mouse_genomes_project 8 55482221 55517965 - MGP_C3HHeJ_P0088465 Adam29 protein_coding protein_coding MGP_C3HHeJ_T0087931.1 MGP_C3HHeJ_G0033135.1 mouse_genomes_project 8 20145251 20184273 - MGP_C3HHeJ_P0087931 Nek3 protein_coding protein_coding MGP_C3HHeJ_T0087932.1 MGP_C3HHeJ_G0033135.1 mouse_genomes_project 8 20145251 20184296 - MGP_C3HHeJ_P0087932 Nek3 protein_coding protein_coding MGP_C3HHeJ_T0087933.1 MGP_C3HHeJ_G0033135.1 mouse_genomes_project 8 20145254 20180240 - MGP_C3HHeJ_P0087933 Nek3 protein_coding protein_coding MGP_C3HHeJ_T0087934.1 MGP_C3HHeJ_G0033135.1 mouse_genomes_project 8 20145654 20149272 - Nek3 protein_coding retained_intron MGP_C3HHeJ_T0099638.1 MGP_C3HHeJ_G0037832.1 mouse_genomes_project 8 53007718 53007780 + Gm22841 snRNA snRNA MGP_C3HHeJ_T0089676.1 MGP_C3HHeJ_G0033668.1 mouse_genomes_project 8 96277822 96283639 - MGP_C3HHeJ_P0089676 Zfp319 protein_coding protein_coding MGP_C3HHeJ_T0010874.1 MGP_C3HHeJ_G0009007.1 mouse_genomes_project 8 39125775 39125830 - Mir7666 miRNA miRNA MGP_C3HHeJ_T0090231.1 MGP_C3HHeJ_G0033878.1 mouse_genomes_project 8 122244854 122277221 - MGP_C3HHeJ_P0090231 Cotl1 protein_coding protein_coding MGP_C3HHeJ_T0090232.1 MGP_C3HHeJ_G0033878.1 mouse_genomes_project 8 122244854 122277278 - MGP_C3HHeJ_P0090232 Cotl1 protein_coding protein_coding MGP_C3HHeJ_T0018255.1 MGP_C3HHeJ_G0015480.1 mouse_genomes_project 8 85454886 85456104 + 1700122E12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018256.1 MGP_C3HHeJ_G0015480.1 mouse_genomes_project 8 85455136 85455905 + 1700122E12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0005301.1 MGP_C3HHeJ_G0004485.1 mouse_genomes_project 8 85199185 85205132 - Gm16183 antisense antisense MGP_C3HHeJ_T0099633.1 MGP_C3HHeJ_G0037827.1 mouse_genomes_project 8 44995345 44995471 - Gm25309 snRNA snRNA MGP_C3HHeJ_T0015743.1 MGP_C3HHeJ_G0013847.1 mouse_genomes_project 8 8112264 8112705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015749.1 MGP_C3HHeJ_G0013853.1 mouse_genomes_project 8 16865055 16865893 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099655.1 MGP_C3HHeJ_G0037849.1 mouse_genomes_project 8 98286633 98286735 + Gm25160 snRNA snRNA MGP_C3HHeJ_T0015778.1 MGP_C3HHeJ_G0013882.1 mouse_genomes_project 8 68677237 68677862 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009120.1 MGP_C3HHeJ_G0007319.1 mouse_genomes_project 8 126269585 126279182 - 4732419C18Rik lincRNA lincRNA MGP_C3HHeJ_T0088558.1 MGP_C3HHeJ_G0033329.1 mouse_genomes_project 8 63774325 63981171 - MGP_C3HHeJ_P0088558 Tll1 protein_coding protein_coding MGP_C3HHeJ_T0087686.1 MGP_C3HHeJ_G0033045.1 mouse_genomes_project 8 8521689 8642075 - MGP_C3HHeJ_P0087686 Col4a1 protein_coding protein_coding MGP_C3HHeJ_T0087687.1 MGP_C3HHeJ_G0033045.1 mouse_genomes_project 8 8535658 8540059 - Col4a1 protein_coding processed_transcript MGP_C3HHeJ_T0090515.1 MGP_C3HHeJ_G0033944.1 mouse_genomes_project 8 126172277 126174335 + Rhou protein_coding retained_intron MGP_C3HHeJ_T0090516.1 MGP_C3HHeJ_G0033944.1 mouse_genomes_project 8 126172277 126183327 + MGP_C3HHeJ_P0090516 Rhou protein_coding protein_coding MGP_C3HHeJ_T0089894.1 MGP_C3HHeJ_G0033759.1 mouse_genomes_project 8 107732949 107762800 + MGP_C3HHeJ_P0089894 Dus2 protein_coding protein_coding MGP_C3HHeJ_T0089896.1 MGP_C3HHeJ_G0033759.1 mouse_genomes_project 8 107755172 107801397 + MGP_C3HHeJ_P0089896 Dus2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089897.1 MGP_C3HHeJ_G0033759.1 mouse_genomes_project 8 107755172 107801376 + MGP_C3HHeJ_P0089897 Dus2 protein_coding protein_coding MGP_C3HHeJ_T0089898.1 MGP_C3HHeJ_G0033759.1 mouse_genomes_project 8 107755187 107779047 + Dus2 protein_coding retained_intron MGP_C3HHeJ_T0089899.1 MGP_C3HHeJ_G0033759.1 mouse_genomes_project 8 107781381 107793843 + Dus2 protein_coding retained_intron MGP_C3HHeJ_T0089900.1 MGP_C3HHeJ_G0033759.1 mouse_genomes_project 8 107796264 107799756 + Dus2 protein_coding retained_intron MGP_C3HHeJ_T0010908.1 MGP_C3HHeJ_G0009041.1 mouse_genomes_project 8 93774863 93774929 - Gm22151 miRNA miRNA MGP_C3HHeJ_T0098191.1 MGP_C3HHeJ_G0036403.1 mouse_genomes_project 8 46944088 46944212 + n-R5s96 rRNA rRNA MGP_C3HHeJ_T0008985.1 MGP_C3HHeJ_G0007219.1 mouse_genomes_project 8 9066802 9076211 + 1700128E19Rik lincRNA lincRNA MGP_C3HHeJ_T0099666.1 MGP_C3HHeJ_G0037860.1 mouse_genomes_project 8 120807466 120807573 - Gm24035 snRNA snRNA MGP_C3HHeJ_T0088705.1 MGP_C3HHeJ_G0033378.1 mouse_genomes_project 8 70045458 70072888 - MGP_C3HHeJ_P0088705 Ncan protein_coding protein_coding MGP_C3HHeJ_T0088095.1 MGP_C3HHeJ_G0033182.1 mouse_genomes_project 8 24124933 24155987 - MGP_C3HHeJ_P0088095 Hgsnat protein_coding protein_coding MGP_C3HHeJ_T0088369.1 MGP_C3HHeJ_G0033274.1 mouse_genomes_project 8 45362972 45367460 - MGP_C3HHeJ_P0088369 Slc25a4 protein_coding protein_coding MGP_C3HHeJ_T0088370.1 MGP_C3HHeJ_G0033274.1 mouse_genomes_project 8 45364145 45367206 - Slc25a4 protein_coding retained_intron MGP_C3HHeJ_T0089264.1 MGP_C3HHeJ_G0033551.1 mouse_genomes_project 8 85261680 85269110 - MGP_C3HHeJ_P0089264 Nacc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089265.1 MGP_C3HHeJ_G0033551.1 mouse_genomes_project 8 85261680 85268381 - MGP_C3HHeJ_P0089265 Nacc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089130.1 MGP_C3HHeJ_G0033505.1 mouse_genomes_project 8 81232104 81353007 - MGP_C3HHeJ_P0089130 Gab1 protein_coding protein_coding MGP_C3HHeJ_T0010924.1 MGP_C3HHeJ_G0009057.1 mouse_genomes_project 8 113037026 113037107 - Mir3473d miRNA miRNA MGP_C3HHeJ_T0087598.1 MGP_C3HHeJ_G0033016.1 mouse_genomes_project 8 800791 807136 - MGP_C3HHeJ_P0087598 Cd209e protein_coding protein_coding MGP_C3HHeJ_T0087915.1 MGP_C3HHeJ_G0033125.1 mouse_genomes_project 8 19890500 19890905 - MGP_C3HHeJ_P0087915 Defb9 protein_coding protein_coding MGP_C3HHeJ_T0100934.1 MGP_C3HHeJ_G0039128.1 mouse_genomes_project 8 125682873 125682959 + Snord68 snoRNA snoRNA MGP_C3HHeJ_T0089983.1 MGP_C3HHeJ_G0033788.1 mouse_genomes_project 8 109427529 109436702 - MGP_C3HHeJ_P0089983 Psmd7 protein_coding protein_coding MGP_C3HHeJ_T0009037.1 MGP_C3HHeJ_G0007262.1 mouse_genomes_project 8 82169275 82170473 - 4930579O11Rik lincRNA lincRNA MGP_C3HHeJ_T0009038.1 MGP_C3HHeJ_G0007262.1 mouse_genomes_project 8 82169303 82170519 - 4930579O11Rik lincRNA lincRNA MGP_C3HHeJ_T0090166.1 MGP_C3HHeJ_G0033850.1 mouse_genomes_project 8 119206410 119212234 - Cmc2 protein_coding retained_intron MGP_C3HHeJ_T0090167.1 MGP_C3HHeJ_G0033850.1 mouse_genomes_project 8 119206410 119231824 - MGP_C3HHeJ_P0090167 Cmc2 protein_coding protein_coding MGP_C3HHeJ_T0090168.1 MGP_C3HHeJ_G0033850.1 mouse_genomes_project 8 119206986 119231791 - MGP_C3HHeJ_P0090168 Cmc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090169.1 MGP_C3HHeJ_G0033850.1 mouse_genomes_project 8 119207240 119231808 - MGP_C3HHeJ_P0090169 Cmc2 protein_coding protein_coding MGP_C3HHeJ_T0090170.1 MGP_C3HHeJ_G0033850.1 mouse_genomes_project 8 119207322 119231815 - Cmc2 protein_coding processed_transcript MGP_C3HHeJ_T0090171.1 MGP_C3HHeJ_G0033850.1 mouse_genomes_project 8 119207339 119231734 - MGP_C3HHeJ_P0090171 Cmc2 protein_coding protein_coding MGP_C3HHeJ_T0087764.1 MGP_C3HHeJ_G0033063.1 mouse_genomes_project 8 10459941 10478511 + MGP_C3HHeJ_P0087764 F10 protein_coding protein_coding MGP_C3HHeJ_T0087765.1 MGP_C3HHeJ_G0033063.1 mouse_genomes_project 8 10460206 10468767 + MGP_C3HHeJ_P0087765 F10 protein_coding protein_coding MGP_C3HHeJ_T0087766.1 MGP_C3HHeJ_G0033063.1 mouse_genomes_project 8 10460457 10478493 + MGP_C3HHeJ_P0087766 F10 protein_coding protein_coding MGP_C3HHeJ_T0009068.1 MGP_C3HHeJ_G0007283.1 mouse_genomes_project 8 92685872 92693894 + Gm28511 lincRNA lincRNA MGP_C3HHeJ_T0087880.1 MGP_C3HHeJ_G0033098.1 mouse_genomes_project 8 16248674 16301453 - MGP_C3HHeJ_P0087880 Angpt2 protein_coding protein_coding MGP_C3HHeJ_T0087881.1 MGP_C3HHeJ_G0033098.1 mouse_genomes_project 8 16250502 16257969 - Angpt2 protein_coding processed_transcript MGP_C3HHeJ_T0090225.1 MGP_C3HHeJ_G0033873.1 mouse_genomes_project 8 122037028 122041209 + MGP_C3HHeJ_P0090225 Adad2 protein_coding protein_coding MGP_C3HHeJ_T0005298.1 MGP_C3HHeJ_G0004483.1 mouse_genomes_project 8 77837473 77839531 + 0610038B21Rik antisense antisense MGP_C3HHeJ_T0005299.1 MGP_C3HHeJ_G0004483.1 mouse_genomes_project 8 77839066 77844825 + 0610038B21Rik antisense antisense MGP_C3HHeJ_T0008999.1 MGP_C3HHeJ_G0007230.1 mouse_genomes_project 8 26940144 26942240 + Gm26795 lincRNA lincRNA MGP_C3HHeJ_T0009000.1 MGP_C3HHeJ_G0007230.1 mouse_genomes_project 8 26940171 26940948 + Gm26795 lincRNA lincRNA MGP_C3HHeJ_T0089429.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86491051 86531619 + Phkb protein_coding processed_transcript MGP_C3HHeJ_T0089430.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86491083 86584467 + MGP_C3HHeJ_P0089430 Phkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089431.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86491094 86713598 + MGP_C3HHeJ_P0089431 Phkb protein_coding protein_coding MGP_C3HHeJ_T0089432.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86491100 86568227 + Phkb protein_coding processed_transcript MGP_C3HHeJ_T0089433.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86491108 86567961 + MGP_C3HHeJ_P0089433 Phkb protein_coding protein_coding MGP_C3HHeJ_T0089434.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86492878 86549454 + MGP_C3HHeJ_P0089434 Phkb protein_coding protein_coding MGP_C3HHeJ_T0089435.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86493142 86531706 + MGP_C3HHeJ_P0089435 Phkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089436.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86665732 86680294 + MGP_C3HHeJ_P0089436 Phkb protein_coding protein_coding MGP_C3HHeJ_T0089437.1 MGP_C3HHeJ_G0033593.1 mouse_genomes_project 8 86685547 86712863 + Phkb protein_coding processed_transcript MGP_C3HHeJ_T0099629.1 MGP_C3HHeJ_G0037823.1 mouse_genomes_project 8 30670990 30671110 + Gm22140 snRNA snRNA MGP_C3HHeJ_T0090293.1 MGP_C3HHeJ_G0033891.1 mouse_genomes_project 8 123228481 123248652 + MGP_C3HHeJ_P0090293 Irf8 protein_coding protein_coding MGP_C3HHeJ_T0090294.1 MGP_C3HHeJ_G0033891.1 mouse_genomes_project 8 123228482 123235366 + Irf8 protein_coding retained_intron MGP_C3HHeJ_T0090295.1 MGP_C3HHeJ_G0033891.1 mouse_genomes_project 8 123228508 123245436 + MGP_C3HHeJ_P0090295 Irf8 protein_coding protein_coding MGP_C3HHeJ_T0090296.1 MGP_C3HHeJ_G0033891.1 mouse_genomes_project 8 123230762 123247539 + MGP_C3HHeJ_P0090296 Irf8 protein_coding protein_coding MGP_C3HHeJ_T0090298.1 MGP_C3HHeJ_G0033891.1 mouse_genomes_project 8 123237437 123245691 + Irf8 protein_coding retained_intron MGP_C3HHeJ_T0090299.1 MGP_C3HHeJ_G0033891.1 mouse_genomes_project 8 123244166 123245669 + Irf8 protein_coding processed_transcript MGP_C3HHeJ_T0087680.1 MGP_C3HHeJ_G0033041.1 mouse_genomes_project 8 7245802 7260251 + MGP_C3HHeJ_P0087680 Abhd13 protein_coding protein_coding MGP_C3HHeJ_T0087681.1 MGP_C3HHeJ_G0033041.1 mouse_genomes_project 8 7245812 7260251 + MGP_C3HHeJ_P0087681 Abhd13 protein_coding protein_coding MGP_C3HHeJ_T0088560.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64514933 64530618 - MGP_C3HHeJ_P0088560 Msmo1 protein_coding protein_coding MGP_C3HHeJ_T0088561.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64515003 64530407 - Msmo1 protein_coding processed_transcript MGP_C3HHeJ_T0088562.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64515021 64530404 - Msmo1 protein_coding retained_intron MGP_C3HHeJ_T0088563.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64515419 64518778 - Msmo1 protein_coding processed_transcript MGP_C3HHeJ_T0088564.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64520587 64527924 - MGP_C3HHeJ_P0088564 Msmo1 protein_coding protein_coding MGP_C3HHeJ_T0088565.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64521908 64530374 - Msmo1 protein_coding retained_intron MGP_C3HHeJ_T0088566.1 MGP_C3HHeJ_G0033331.1 mouse_genomes_project 8 64524575 64530374 - MGP_C3HHeJ_P0088566 Msmo1 protein_coding protein_coding MGP_C3HHeJ_T0005251.1 MGP_C3HHeJ_G0004446.1 mouse_genomes_project 8 672339 701949 + Gm16553 antisense antisense MGP_C3HHeJ_T0087909.1 MGP_C3HHeJ_G0033119.1 mouse_genomes_project 8 19657320 19658978 - MGP_C3HHeJ_P0087909 protein_coding protein_coding MGP_C3HHeJ_T0099641.1 MGP_C3HHeJ_G0037835.1 mouse_genomes_project 8 65463337 65463444 - Gm23515 snRNA snRNA MGP_C3HHeJ_T0090064.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113058477 113065592 + MGP_C3HHeJ_P0090064 Aars protein_coding protein_coding MGP_C3HHeJ_T0090065.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113062520 113073765 + Aars protein_coding retained_intron MGP_C3HHeJ_T0090066.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113062543 113086299 + MGP_C3HHeJ_P0090066 Aars protein_coding protein_coding MGP_C3HHeJ_T0090067.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113062557 113075384 + Aars protein_coding retained_intron MGP_C3HHeJ_T0090068.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113070367 113071451 + Aars protein_coding retained_intron MGP_C3HHeJ_T0090069.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113071720 113073763 + Aars protein_coding retained_intron MGP_C3HHeJ_T0090070.1 MGP_C3HHeJ_G0033818.1 mouse_genomes_project 8 113076552 113078651 + Aars protein_coding retained_intron MGP_C3HHeJ_T0011612.1 MGP_C3HHeJ_G0009745.1 mouse_genomes_project 8 691835 692148 - Gm23886 misc_RNA misc_RNA MGP_C3HHeJ_T0090601.1 MGP_C3HHeJ_G0033978.1 mouse_genomes_project 8 129076261 129127026 - MGP_C3HHeJ_P0090601 Tarbp1 protein_coding protein_coding MGP_C3HHeJ_T0090201.1 MGP_C3HHeJ_G0033865.1 mouse_genomes_project 8 121812805 121830191 + MGP_C3HHeJ_P0090201 Mlycd protein_coding protein_coding MGP_C3HHeJ_T0090202.1 MGP_C3HHeJ_G0033865.1 mouse_genomes_project 8 121812825 121830176 + Mlycd protein_coding retained_intron MGP_C3HHeJ_T0089986.1 MGP_C3HHeJ_G0033790.1 mouse_genomes_project 8 111408623 111461670 + MGP_C3HHeJ_P0089986 Pmfbp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089818.1 MGP_C3HHeJ_G0033727.1 mouse_genomes_project 8 107043207 107061765 - Fhod1 protein_coding retained_intron MGP_C3HHeJ_T0089819.1 MGP_C3HHeJ_G0033727.1 mouse_genomes_project 8 107043207 107061809 - MGP_C3HHeJ_P0089819 Fhod1 protein_coding protein_coding MGP_C3HHeJ_T0089820.1 MGP_C3HHeJ_G0033727.1 mouse_genomes_project 8 107044984 107045611 - Fhod1 protein_coding retained_intron MGP_C3HHeJ_T0089821.1 MGP_C3HHeJ_G0033727.1 mouse_genomes_project 8 107050504 107051859 - Fhod1 protein_coding retained_intron MGP_C3HHeJ_T0089924.1 MGP_C3HHeJ_G0033770.1 mouse_genomes_project 8 108288466 108338976 + MGP_C3HHeJ_P0089924 Cdh3 protein_coding protein_coding MGP_C3HHeJ_T0010901.1 MGP_C3HHeJ_G0009034.1 mouse_genomes_project 8 85539253 85539362 - Gm24197 miRNA miRNA MGP_C3HHeJ_T0088310.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44626713 44955241 + MGP_C3HHeJ_P0088310 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088311.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44626719 44905738 + Sorbs2 protein_coding retained_intron MGP_C3HHeJ_T0088312.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44626723 44922777 + MGP_C3HHeJ_P0088312 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088313.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44626743 44904269 + MGP_C3HHeJ_P0088313 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088314.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44748346 44871714 + MGP_C3HHeJ_P0088314 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088315.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44748573 44871736 + MGP_C3HHeJ_P0088315 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088316.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44748786 44772921 + Sorbs2 protein_coding processed_transcript MGP_C3HHeJ_T0088317.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44748802 44872539 + MGP_C3HHeJ_P0088317 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088318.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782259 44948506 + MGP_C3HHeJ_P0088318 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088319.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782637 44904269 + MGP_C3HHeJ_P0088319 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088320.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782643 44955238 + MGP_C3HHeJ_P0088320 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088321.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782663 44871573 + Sorbs2 protein_coding retained_intron MGP_C3HHeJ_T0088322.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782676 44872496 + MGP_C3HHeJ_P0088322 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088323.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782751 44868326 + Sorbs2 protein_coding retained_intron MGP_C3HHeJ_T0088324.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44782771 44900048 + MGP_C3HHeJ_P0088324 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088325.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44785960 44885268 + MGP_C3HHeJ_P0088325 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088326.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44814223 44885317 + MGP_C3HHeJ_P0088326 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088327.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44814227 44885277 + MGP_C3HHeJ_P0088327 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088328.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44858902 44955247 + MGP_C3HHeJ_P0088328 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088329.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44889291 44955239 + MGP_C3HHeJ_P0088329 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088330.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44890027 44927106 + Sorbs2 protein_coding processed_transcript MGP_C3HHeJ_T0088331.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44897233 44920252 + MGP_C3HHeJ_P0088331 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088332.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44897949 44920220 + MGP_C3HHeJ_P0088332 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088333.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44899748 44903288 + Sorbs2 protein_coding retained_intron MGP_C3HHeJ_T0088334.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44903063 44922451 + MGP_C3HHeJ_P0088334 Sorbs2 protein_coding protein_coding MGP_C3HHeJ_T0088335.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44930572 44931284 + Sorbs2 protein_coding retained_intron MGP_C3HHeJ_T0088336.1 MGP_C3HHeJ_G0033265.1 mouse_genomes_project 8 44933168 44934732 + Sorbs2 protein_coding processed_transcript MGP_C3HHeJ_T0088842.1 MGP_C3HHeJ_G0033410.1 mouse_genomes_project 8 70711165 70715461 + MGP_C3HHeJ_P0088842 Gm3336 protein_coding protein_coding MGP_C3HHeJ_T0088286.1 MGP_C3HHeJ_G0033251.1 mouse_genomes_project 8 40263358 40282873 - MGP_C3HHeJ_P0088286 Frg1 protein_coding protein_coding MGP_C3HHeJ_T0087967.1 MGP_C3HHeJ_G0033150.1 mouse_genomes_project 8 20912846 21004362 + MGP_C3HHeJ_P0087967 Kat6a protein_coding unknown_likely_coding MGP_C3HHeJ_T0087968.1 MGP_C3HHeJ_G0033150.1 mouse_genomes_project 8 20969278 20979041 + Kat6a protein_coding processed_transcript MGP_C3HHeJ_T0089112.1 MGP_C3HHeJ_G0033498.1 mouse_genomes_project 8 80060584 80100402 + MGP_C3HHeJ_P0089112 Otud4 protein_coding protein_coding MGP_C3HHeJ_T0089113.1 MGP_C3HHeJ_G0033498.1 mouse_genomes_project 8 80060670 80100350 + MGP_C3HHeJ_P0089113 Otud4 protein_coding protein_coding MGP_C3HHeJ_T0089114.1 MGP_C3HHeJ_G0033498.1 mouse_genomes_project 8 80073391 80081898 + Otud4 protein_coding retained_intron MGP_C3HHeJ_T0089115.1 MGP_C3HHeJ_G0033498.1 mouse_genomes_project 8 80073803 80083921 + Otud4 protein_coding retained_intron MGP_C3HHeJ_T0089116.1 MGP_C3HHeJ_G0033498.1 mouse_genomes_project 8 80083761 80091167 + MGP_C3HHeJ_P0089116 Otud4 protein_coding protein_coding MGP_C3HHeJ_T0089117.1 MGP_C3HHeJ_G0033498.1 mouse_genomes_project 8 80089500 80094056 + MGP_C3HHeJ_P0089117 Otud4 protein_coding protein_coding MGP_C3HHeJ_T0089002.1 MGP_C3HHeJ_G0033456.1 mouse_genomes_project 8 72172992 72193980 - MGP_C3HHeJ_P0089002 Cyp4f18 protein_coding protein_coding MGP_C3HHeJ_T0089003.1 MGP_C3HHeJ_G0033456.1 mouse_genomes_project 8 72172993 72177430 - Cyp4f18 protein_coding processed_transcript MGP_C3HHeJ_T0089004.1 MGP_C3HHeJ_G0033456.1 mouse_genomes_project 8 72174065 72177745 - Cyp4f18 protein_coding processed_transcript MGP_C3HHeJ_T0011620.1 MGP_C3HHeJ_G0009753.1 mouse_genomes_project 8 24433635 24433894 - Gm22227 misc_RNA misc_RNA MGP_C3HHeJ_T0090546.1 MGP_C3HHeJ_G0033958.1 mouse_genomes_project 8 127206008 127235776 - MGP_C3HHeJ_P0090546 2310022B05Rik protein_coding protein_coding MGP_C3HHeJ_T0088122.1 MGP_C3HHeJ_G0033192.1 mouse_genomes_project 8 25368249 25373043 - MGP_C3HHeJ_P0088122 Brf2 protein_coding protein_coding MGP_C3HHeJ_T0088413.1 MGP_C3HHeJ_G0033286.1 mouse_genomes_project 8 46891675 46899656 - MGP_C3HHeJ_P0088413 Ing2 protein_coding protein_coding MGP_C3HHeJ_T0088414.1 MGP_C3HHeJ_G0033286.1 mouse_genomes_project 8 46891675 46898187 - MGP_C3HHeJ_P0088414 Ing2 protein_coding protein_coding MGP_C3HHeJ_T0088415.1 MGP_C3HHeJ_G0033286.1 mouse_genomes_project 8 46893252 46900054 - MGP_C3HHeJ_P0088415 Ing2 protein_coding protein_coding MGP_C3HHeJ_T0005285.1 MGP_C3HHeJ_G0004472.1 mouse_genomes_project 8 56918262 56921509 - Gm28063 antisense antisense MGP_C3HHeJ_T0005286.1 MGP_C3HHeJ_G0004472.1 mouse_genomes_project 8 56918280 56921509 - Gm28063 antisense antisense MGP_C3HHeJ_T0088085.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 23992034 24014902 - MGP_C3HHeJ_P0088085 Ash2l protein_coding protein_coding MGP_C3HHeJ_T0088086.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 23992368 24014885 - MGP_C3HHeJ_P0088086 Ash2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088087.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 23992714 24014892 - MGP_C3HHeJ_P0088087 Ash2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088088.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 23993244 24014916 - MGP_C3HHeJ_P0088088 Ash2l protein_coding protein_coding MGP_C3HHeJ_T0088089.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 23998603 23999430 - Ash2l protein_coding retained_intron MGP_C3HHeJ_T0088090.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 23998998 24005202 - Ash2l protein_coding retained_intron MGP_C3HHeJ_T0088091.1 MGP_C3HHeJ_G0033180.1 mouse_genomes_project 8 24002847 24004658 - Ash2l protein_coding processed_transcript MGP_C3HHeJ_T0100901.1 MGP_C3HHeJ_G0039095.1 mouse_genomes_project 8 62827495 62827629 - Gm24236 snoRNA snoRNA MGP_C3HHeJ_T0015759.1 MGP_C3HHeJ_G0013863.1 mouse_genomes_project 8 26487931 26488919 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100932.1 MGP_C3HHeJ_G0039126.1 mouse_genomes_project 8 121119075 121119163 + Gm22999 snoRNA snoRNA MGP_C3HHeJ_T0089608.1 MGP_C3HHeJ_G0033647.1 mouse_genomes_project 8 95453527 95492458 + MGP_C3HHeJ_P0089608 Cpne2 protein_coding protein_coding MGP_C3HHeJ_T0089609.1 MGP_C3HHeJ_G0033647.1 mouse_genomes_project 8 95453576 95470027 + Cpne2 protein_coding retained_intron MGP_C3HHeJ_T0089610.1 MGP_C3HHeJ_G0033647.1 mouse_genomes_project 8 95453604 95471022 + Cpne2 protein_coding processed_transcript MGP_C3HHeJ_T0089611.1 MGP_C3HHeJ_G0033647.1 mouse_genomes_project 8 95453604 95492319 + MGP_C3HHeJ_P0089611 Cpne2 protein_coding protein_coding MGP_C3HHeJ_T0089612.1 MGP_C3HHeJ_G0033647.1 mouse_genomes_project 8 95484579 95492043 + Cpne2 protein_coding retained_intron MGP_C3HHeJ_T0087856.1 MGP_C3HHeJ_G0033093.1 mouse_genomes_project 8 12533272 12555624 + MGP_C3HHeJ_P0087856 Kbtbd11 protein_coding protein_coding MGP_C3HHeJ_T0087857.1 MGP_C3HHeJ_G0033093.1 mouse_genomes_project 8 12533563 12549384 + Kbtbd11 protein_coding processed_transcript MGP_C3HHeJ_T0087858.1 MGP_C3HHeJ_G0033093.1 mouse_genomes_project 8 12549580 12555624 + MGP_C3HHeJ_P0087858 Kbtbd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087859.1 MGP_C3HHeJ_G0033093.1 mouse_genomes_project 8 12554680 12555255 + Kbtbd11 protein_coding processed_transcript MGP_C3HHeJ_T0088790.1 MGP_C3HHeJ_G0033396.1 mouse_genomes_project 8 70464384 70475460 + MGP_C3HHeJ_P0088790 Crlf1 protein_coding protein_coding MGP_C3HHeJ_T0088791.1 MGP_C3HHeJ_G0033396.1 mouse_genomes_project 8 70464587 70472315 + MGP_C3HHeJ_P0088791 Crlf1 protein_coding protein_coding MGP_C3HHeJ_T0088792.1 MGP_C3HHeJ_G0033396.1 mouse_genomes_project 8 70472517 70475409 + MGP_C3HHeJ_P0088792 Crlf1 protein_coding protein_coding MGP_C3HHeJ_T0089939.1 MGP_C3HHeJ_G0033776.1 mouse_genomes_project 8 108738480 108824860 + MGP_C3HHeJ_P0089939 Sntb2 protein_coding protein_coding MGP_C3HHeJ_T0087533.1 MGP_C3HHeJ_G0032997.1 mouse_genomes_project 8 277357 319308 + MGP_C3HHeJ_P0087533 A430078G23Rik protein_coding protein_coding MGP_C3HHeJ_T0087820.1 MGP_C3HHeJ_G0033081.1 mouse_genomes_project 8 11249157 11261888 + MGP_C3HHeJ_P0087820 Upf3a protein_coding protein_coding MGP_C3HHeJ_T0015767.1 MGP_C3HHeJ_G0013871.1 mouse_genomes_project 8 39687510 39689992 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008996.1 MGP_C3HHeJ_G0007227.1 mouse_genomes_project 8 25041911 25052474 - lincRNA lincRNA MGP_C3HHeJ_T0009114.1 MGP_C3HHeJ_G0007315.1 mouse_genomes_project 8 124383691 124395019 + Gm26812 lincRNA lincRNA MGP_C3HHeJ_T0009115.1 MGP_C3HHeJ_G0007315.1 mouse_genomes_project 8 124385386 124394738 + Gm26812 lincRNA lincRNA MGP_C3HHeJ_T0090091.1 MGP_C3HHeJ_G0033824.1 mouse_genomes_project 8 113393579 113414888 - Fa2h protein_coding processed_transcript MGP_C3HHeJ_T0090092.1 MGP_C3HHeJ_G0033824.1 mouse_genomes_project 8 113393585 113445962 - MGP_C3HHeJ_P0090092 Fa2h protein_coding protein_coding MGP_C3HHeJ_T0090093.1 MGP_C3HHeJ_G0033824.1 mouse_genomes_project 8 113394209 113396502 - Fa2h protein_coding processed_transcript MGP_C3HHeJ_T0090094.1 MGP_C3HHeJ_G0033824.1 mouse_genomes_project 8 113395914 113445956 - Fa2h protein_coding retained_intron MGP_C3HHeJ_T0090524.1 MGP_C3HHeJ_G0033950.1 mouse_genomes_project 8 126486797 126518230 - MGP_C3HHeJ_P0090524 Abcb10 protein_coding protein_coding MGP_C3HHeJ_T0089656.1 MGP_C3HHeJ_G0033663.1 mouse_genomes_project 8 95992114 96017239 + MGP_C3HHeJ_P0089656 Drc7 protein_coding protein_coding MGP_C3HHeJ_T0089866.1 MGP_C3HHeJ_G0033746.1 mouse_genomes_project 8 107562931 107581430 + MGP_C3HHeJ_P0089866 Tsnaxip1 protein_coding protein_coding MGP_C3HHeJ_T0089645.1 MGP_C3HHeJ_G0033658.1 mouse_genomes_project 8 95787861 95801723 - MGP_C3HHeJ_P0089645 Dok4 protein_coding protein_coding MGP_C3HHeJ_T0089202.1 MGP_C3HHeJ_G0033528.1 mouse_genomes_project 8 84492351 84513981 - MGP_C3HHeJ_P0089202 Gm10644 protein_coding protein_coding MGP_C3HHeJ_T0088408.1 MGP_C3HHeJ_G0033285.1 mouse_genomes_project 8 46756949 46777482 + MGP_C3HHeJ_P0088408 Rwdd4a protein_coding protein_coding MGP_C3HHeJ_T0088409.1 MGP_C3HHeJ_G0033285.1 mouse_genomes_project 8 46756949 46775936 + MGP_C3HHeJ_P0088409 Rwdd4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088410.1 MGP_C3HHeJ_G0033285.1 mouse_genomes_project 8 46756971 46768673 + MGP_C3HHeJ_P0088410 Rwdd4a protein_coding protein_coding MGP_C3HHeJ_T0088411.1 MGP_C3HHeJ_G0033285.1 mouse_genomes_project 8 46772564 46775947 + Rwdd4a protein_coding processed_transcript MGP_C3HHeJ_T0088412.1 MGP_C3HHeJ_G0033285.1 mouse_genomes_project 8 46775114 46777612 + Rwdd4a protein_coding retained_intron MGP_C3HHeJ_T0090442.1 MGP_C3HHeJ_G0033926.1 mouse_genomes_project 8 125698699 125716730 + Cpne7 protein_coding retained_intron MGP_C3HHeJ_T0090443.1 MGP_C3HHeJ_G0033926.1 mouse_genomes_project 8 125698703 125716732 + MGP_C3HHeJ_P0090443 Cpne7 protein_coding protein_coding MGP_C3HHeJ_T0090444.1 MGP_C3HHeJ_G0033926.1 mouse_genomes_project 8 125698772 125716732 + Cpne7 protein_coding retained_intron MGP_C3HHeJ_T0090445.1 MGP_C3HHeJ_G0033926.1 mouse_genomes_project 8 125707851 125708708 + Cpne7 protein_coding processed_transcript MGP_C3HHeJ_T0090446.1 MGP_C3HHeJ_G0033926.1 mouse_genomes_project 8 125709964 125713201 + Cpne7 protein_coding retained_intron MGP_C3HHeJ_T0089613.1 MGP_C3HHeJ_G0033648.1 mouse_genomes_project 8 95496861 95524984 - MGP_C3HHeJ_P0089613 Fam192a protein_coding protein_coding MGP_C3HHeJ_T0087782.1 MGP_C3HHeJ_G0033068.1 mouse_genomes_project 8 10611608 10636316 - MGP_C3HHeJ_P0087782 Grtp1 protein_coding protein_coding MGP_C3HHeJ_T0087788.1 MGP_C3HHeJ_G0033070.1 mouse_genomes_project 8 10697240 10730623 - MGP_C3HHeJ_P0087788 Dcun1d2 protein_coding protein_coding MGP_C3HHeJ_T0087789.1 MGP_C3HHeJ_G0033070.1 mouse_genomes_project 8 10697248 10730905 - MGP_C3HHeJ_P0087789 Dcun1d2 protein_coding protein_coding MGP_C3HHeJ_T0087790.1 MGP_C3HHeJ_G0033070.1 mouse_genomes_project 8 10697249 10730610 - MGP_C3HHeJ_P0087790 Dcun1d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087791.1 MGP_C3HHeJ_G0033070.1 mouse_genomes_project 8 10697250 10730904 - Dcun1d2 protein_coding processed_transcript MGP_C3HHeJ_T0087792.1 MGP_C3HHeJ_G0033070.1 mouse_genomes_project 8 10701188 10730613 - MGP_C3HHeJ_P0087792 Dcun1d2 protein_coding protein_coding MGP_C3HHeJ_T0087793.1 MGP_C3HHeJ_G0033070.1 mouse_genomes_project 8 10719623 10722687 - Dcun1d2 protein_coding retained_intron MGP_C3HHeJ_T0015770.1 MGP_C3HHeJ_G0013874.1 mouse_genomes_project 8 41133344 41133826 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009085.1 MGP_C3HHeJ_G0007292.1 mouse_genomes_project 8 100596318 100605232 + lincRNA lincRNA MGP_C3HHeJ_T0089042.1 MGP_C3HHeJ_G0033474.1 mouse_genomes_project 8 72953184 72971848 + MGP_C3HHeJ_P0089042 Sin3b protein_coding protein_coding MGP_C3HHeJ_T0089043.1 MGP_C3HHeJ_G0033474.1 mouse_genomes_project 8 72953184 72989850 + MGP_C3HHeJ_P0089043 Sin3b protein_coding protein_coding MGP_C3HHeJ_T0087860.1 MGP_C3HHeJ_G0033094.1 mouse_genomes_project 8 12563811 12568157 - MGP_C3HHeJ_P0087860 BB014433 protein_coding protein_coding MGP_C3HHeJ_T0087861.1 MGP_C3HHeJ_G0033094.1 mouse_genomes_project 8 12564499 12568166 - MGP_C3HHeJ_P0087861 BB014433 protein_coding protein_coding MGP_C3HHeJ_T0011632.1 MGP_C3HHeJ_G0009765.1 mouse_genomes_project 8 107821472 107821712 - Gm27956 misc_RNA misc_RNA MGP_C3HHeJ_T0090561.1 MGP_C3HHeJ_G0033963.1 mouse_genomes_project 8 127428533 127446927 - MGP_C3HHeJ_P0090561 2810004N23Rik protein_coding protein_coding MGP_C3HHeJ_T0087669.1 MGP_C3HHeJ_G0033032.1 mouse_genomes_project 8 1676971 1677798 - MGP_C3HHeJ_P0087669 protein_coding protein_coding MGP_C3HHeJ_T0099636.1 MGP_C3HHeJ_G0037830.1 mouse_genomes_project 8 51521695 51521834 + Gm24929 snRNA snRNA MGP_C3HHeJ_T0100876.1 MGP_C3HHeJ_G0039070.1 mouse_genomes_project 8 14391563 14391683 + Gm25278 snoRNA snoRNA MGP_C3HHeJ_T0090600.1 MGP_C3HHeJ_G0033977.1 mouse_genomes_project 8 129072117 129075044 + MGP_C3HHeJ_P0090600 Coa6 protein_coding protein_coding MGP_C3HHeJ_T0088989.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132864 72153592 + MGP_C3HHeJ_P0088989 Zfp961 protein_coding protein_coding MGP_C3HHeJ_T0088990.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132874 72153592 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088991.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132892 72153182 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088992.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132893 72151540 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088993.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132896 72151315 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088994.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132897 72151591 + MGP_C3HHeJ_P0088994 Zfp961 protein_coding protein_coding MGP_C3HHeJ_T0088995.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132903 72151431 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088996.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132906 72151780 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088997.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132907 72149506 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0088998.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132907 72152241 + MGP_C3HHeJ_P0088998 Zfp961 protein_coding protein_coding MGP_C3HHeJ_T0088999.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132917 72177922 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0089000.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72132917 72154972 + MGP_C3HHeJ_P0089000 Zfp961 protein_coding protein_coding MGP_C3HHeJ_T0089001.1 MGP_C3HHeJ_G0033455.1 mouse_genomes_project 8 72136267 72151438 + Zfp961 protein_coding processed_transcript MGP_C3HHeJ_T0098253.1 MGP_C3HHeJ_G0036465.1 mouse_genomes_project 8 69306892 69307188 + Gm25661 ribozyme ribozyme MGP_C3HHeJ_T0089211.1 MGP_C3HHeJ_G0033532.1 mouse_genomes_project 8 84561356 84564647 + MGP_C3HHeJ_P0089211 1700067K01Rik protein_coding protein_coding MGP_C3HHeJ_T0089212.1 MGP_C3HHeJ_G0033532.1 mouse_genomes_project 8 84561558 84564546 + MGP_C3HHeJ_P0089212 1700067K01Rik protein_coding protein_coding MGP_C3HHeJ_T0089213.1 MGP_C3HHeJ_G0033532.1 mouse_genomes_project 8 84561558 84564540 + MGP_C3HHeJ_P0089213 1700067K01Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089214.1 MGP_C3HHeJ_G0033532.1 mouse_genomes_project 8 84562199 84563158 + 1700067K01Rik protein_coding retained_intron MGP_C3HHeJ_T0009001.1 MGP_C3HHeJ_G0007231.1 mouse_genomes_project 8 28979614 28988654 + 4933433F19Rik lincRNA lincRNA MGP_C3HHeJ_T0088879.1 MGP_C3HHeJ_G0033427.1 mouse_genomes_project 8 71325734 71434444 + MGP_C3HHeJ_P0088879 Myo9b protein_coding protein_coding MGP_C3HHeJ_T0088880.1 MGP_C3HHeJ_G0033427.1 mouse_genomes_project 8 71325734 71434444 + MGP_C3HHeJ_P0088880 Myo9b protein_coding protein_coding MGP_C3HHeJ_T0088881.1 MGP_C3HHeJ_G0033427.1 mouse_genomes_project 8 71325734 71434444 + MGP_C3HHeJ_P0088881 Myo9b protein_coding protein_coding MGP_C3HHeJ_T0088882.1 MGP_C3HHeJ_G0033427.1 mouse_genomes_project 8 71325765 71401840 + MGP_C3HHeJ_P0088882 Myo9b protein_coding unknown_likely_coding MGP_C3HHeJ_T0088883.1 MGP_C3HHeJ_G0033427.1 mouse_genomes_project 8 71416255 71434449 + MGP_C3HHeJ_P0088883 Myo9b protein_coding unknown_likely_coding MGP_C3HHeJ_T0011634.1 MGP_C3HHeJ_G0009767.1 mouse_genomes_project 8 114707309 114707414 + Gm22664 misc_RNA misc_RNA MGP_C3HHeJ_T0088261.1 MGP_C3HHeJ_G0033246.1 mouse_genomes_project 8 39778627 39793013 + Pdgfrl protein_coding retained_intron MGP_C3HHeJ_T0088262.1 MGP_C3HHeJ_G0033246.1 mouse_genomes_project 8 39778643 39841563 + MGP_C3HHeJ_P0088262 Pdgfrl protein_coding protein_coding MGP_C3HHeJ_T0100893.1 MGP_C3HHeJ_G0039087.1 mouse_genomes_project 8 44701178 44701310 - Gm23604 snoRNA snoRNA MGP_C3HHeJ_T0102329.1 MGP_C3HHeJ_G0040292.1 mouse_genomes_project 8 68499709 68500008 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0089716.1 MGP_C3HHeJ_G0033683.1 mouse_genomes_project 8 103973062 104150327 - MGP_C3HHeJ_P0089716 Cdh11 protein_coding protein_coding MGP_C3HHeJ_T0090558.1 MGP_C3HHeJ_G0033961.1 mouse_genomes_project 8 127316487 127327938 - MGP_C3HHeJ_P0090558 Fam89a protein_coding protein_coding MGP_C3HHeJ_T0100899.1 MGP_C3HHeJ_G0039093.1 mouse_genomes_project 8 60452855 60452963 - Gm23329 snoRNA snoRNA MGP_C3HHeJ_T0088097.1 MGP_C3HHeJ_G0033184.1 mouse_genomes_project 8 24183307 24200546 - MGP_C3HHeJ_P0088097 Fnta protein_coding protein_coding MGP_C3HHeJ_T0088421.1 MGP_C3HHeJ_G0033292.1 mouse_genomes_project 8 47068941 47238016 - MGP_C3HHeJ_P0088421 Wwc2 protein_coding protein_coding MGP_C3HHeJ_T0088793.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70475670 70478100 - 2810428I15Rik protein_coding retained_intron MGP_C3HHeJ_T0088794.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70475673 70477491 - 2810428I15Rik protein_coding retained_intron MGP_C3HHeJ_T0088795.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70475673 70477805 - 2810428I15Rik protein_coding processed_transcript MGP_C3HHeJ_T0088796.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70475673 70478131 - MGP_C3HHeJ_P0088796 2810428I15Rik protein_coding protein_coding MGP_C3HHeJ_T0088797.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70475677 70478116 - MGP_C3HHeJ_P0088797 2810428I15Rik protein_coding protein_coding MGP_C3HHeJ_T0088798.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70475776 70477487 - 2810428I15Rik protein_coding retained_intron MGP_C3HHeJ_T0088799.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70476623 70478078 - 2810428I15Rik protein_coding retained_intron MGP_C3HHeJ_T0088800.1 MGP_C3HHeJ_G0033397.1 mouse_genomes_project 8 70477229 70478092 - 2810428I15Rik protein_coding retained_intron MGP_C3HHeJ_T0088884.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71441689 71444562 + MGP_C3HHeJ_P0088884 Use1 protein_coding protein_coding MGP_C3HHeJ_T0088885.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71441783 71444565 + MGP_C3HHeJ_P0088885 Use1 protein_coding protein_coding MGP_C3HHeJ_T0088886.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71441846 71442648 + MGP_C3HHeJ_P0088886 Use1 protein_coding protein_coding MGP_C3HHeJ_T0088887.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442058 71444565 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088888.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442058 71444565 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088889.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442058 71444565 + MGP_C3HHeJ_P0088889 Use1 protein_coding protein_coding MGP_C3HHeJ_T0088890.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442084 71443664 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088891.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442084 71443831 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088892.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442225 71443518 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088893.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442482 71443055 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088894.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71442621 71444565 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0088895.1 MGP_C3HHeJ_G0033428.1 mouse_genomes_project 8 71443624 71444504 + Use1 protein_coding retained_intron MGP_C3HHeJ_T0099627.1 MGP_C3HHeJ_G0037821.1 mouse_genomes_project 8 25700855 25700959 - Gm24410 snRNA snRNA MGP_C3HHeJ_T0088698.1 MGP_C3HHeJ_G0033375.1 mouse_genomes_project 8 69995845 70024429 + MGP_C3HHeJ_P0088698 Sugp1 protein_coding protein_coding MGP_C3HHeJ_T0087874.1 MGP_C3HHeJ_G0033097.1 mouse_genomes_project 8 16150693 16362752 + MGP_C3HHeJ_P0087874 Mcph1 protein_coding protein_coding MGP_C3HHeJ_T0087875.1 MGP_C3HHeJ_G0033097.1 mouse_genomes_project 8 16150726 16271598 + MGP_C3HHeJ_P0087875 Mcph1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087876.1 MGP_C3HHeJ_G0033097.1 mouse_genomes_project 8 16151140 16248337 + Mcph1 protein_coding retained_intron MGP_C3HHeJ_T0087877.1 MGP_C3HHeJ_G0033097.1 mouse_genomes_project 8 16151146 16189216 + MGP_C3HHeJ_P0087877 Mcph1 protein_coding protein_coding MGP_C3HHeJ_T0087878.1 MGP_C3HHeJ_G0033097.1 mouse_genomes_project 8 16181877 16188195 + MGP_C3HHeJ_P0087878 Mcph1 protein_coding protein_coding MGP_C3HHeJ_T0087879.1 MGP_C3HHeJ_G0033097.1 mouse_genomes_project 8 16188906 16209110 + MGP_C3HHeJ_P0087879 Mcph1 protein_coding protein_coding MGP_C3HHeJ_T0011617.1 MGP_C3HHeJ_G0009750.1 mouse_genomes_project 8 9050157 9050401 - Gm27854 misc_RNA misc_RNA MGP_C3HHeJ_T0015748.1 MGP_C3HHeJ_G0013852.1 mouse_genomes_project 8 16214970 16215345 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090140.1 MGP_C3HHeJ_G0033841.1 mouse_genomes_project 8 115786663 115798856 + MGP_C3HHeJ_P0090140 Syce1l protein_coding protein_coding MGP_C3HHeJ_T0090141.1 MGP_C3HHeJ_G0033841.1 mouse_genomes_project 8 115786663 115798856 + MGP_C3HHeJ_P0090141 Syce1l protein_coding protein_coding MGP_C3HHeJ_T0088005.1 MGP_C3HHeJ_G0033161.1 mouse_genomes_project 8 22701703 22713157 - MGP_C3HHeJ_P0088005 Ido1 protein_coding protein_coding MGP_C3HHeJ_T0088006.1 MGP_C3HHeJ_G0033161.1 mouse_genomes_project 8 22701703 22714500 - MGP_C3HHeJ_P0088006 Ido1 protein_coding protein_coding MGP_C3HHeJ_T0099661.1 MGP_C3HHeJ_G0037855.1 mouse_genomes_project 8 112402996 112403103 - Gm23627 snRNA snRNA MGP_C3HHeJ_T0089868.1 MGP_C3HHeJ_G0033748.1 mouse_genomes_project 8 107592940 107594788 + MGP_C3HHeJ_P0089868 Thap11 protein_coding protein_coding MGP_C3HHeJ_T0088225.1 MGP_C3HHeJ_G0033237.1 mouse_genomes_project 8 38390554 38454501 - MGP_C3HHeJ_P0088225 Msr1 protein_coding protein_coding MGP_C3HHeJ_T0088226.1 MGP_C3HHeJ_G0033237.1 mouse_genomes_project 8 38412847 38454501 - MGP_C3HHeJ_P0088226 Msr1 protein_coding protein_coding MGP_C3HHeJ_T0090115.1 MGP_C3HHeJ_G0033828.1 mouse_genomes_project 8 113730483 113758682 + MGP_C3HHeJ_P0090115 Zfp1 protein_coding protein_coding MGP_C3HHeJ_T0015760.1 MGP_C3HHeJ_G0013864.1 mouse_genomes_project 8 29668284 29668750 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089065.1 MGP_C3HHeJ_G0033483.1 mouse_genomes_project 8 75721113 76251018 + MGP_C3HHeJ_P0089065 1700007B14Rik protein_coding protein_coding MGP_C3HHeJ_T0089066.1 MGP_C3HHeJ_G0033483.1 mouse_genomes_project 8 75721402 76251043 + MGP_C3HHeJ_P0089066 1700007B14Rik protein_coding protein_coding MGP_C3HHeJ_T0088191.1 MGP_C3HHeJ_G0033219.1 mouse_genomes_project 8 32637095 32649335 + MGP_C3HHeJ_P0088191 Mboat4 protein_coding protein_coding MGP_C3HHeJ_T0102322.1 MGP_C3HHeJ_G0040285.1 mouse_genomes_project 8 3364 5221 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002287.1 MGP_C3HHeJ_G0002207.1 mouse_genomes_project 8 1512243 1512457 - TEC TEC MGP_C3HHeJ_T0018272.1 MGP_C3HHeJ_G0015489.1 mouse_genomes_project 8 127420912 127447601 + Gm16163 processed_transcript processed_transcript MGP_C3HHeJ_T0089195.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84459576 84501959 + MGP_C3HHeJ_P0089195 Adgrl1 protein_coding protein_coding MGP_C3HHeJ_T0089196.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84460044 84500015 + MGP_C3HHeJ_P0089196 Adgrl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089197.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84460185 84500015 + MGP_C3HHeJ_P0089197 Adgrl1 protein_coding protein_coding MGP_C3HHeJ_T0089198.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84460200 84499990 + MGP_C3HHeJ_P0089198 Adgrl1 protein_coding protein_coding MGP_C3HHeJ_T0089199.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84460200 84499990 + MGP_C3HHeJ_P0089199 Adgrl1 protein_coding protein_coding MGP_C3HHeJ_T0089200.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84483091 84490074 + Adgrl1 protein_coding processed_transcript MGP_C3HHeJ_T0089201.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84488322 84501956 + MGP_C3HHeJ_P0089201 Adgrl1 protein_coding protein_coding MGP_C3HHeJ_T0089203.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84494599 84497497 + Adgrl1 protein_coding retained_intron MGP_C3HHeJ_T0089204.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84496155 84497830 + Adgrl1 protein_coding retained_intron MGP_C3HHeJ_T0089205.1 MGP_C3HHeJ_G0033527.1 mouse_genomes_project 8 84497656 84498867 + MGP_C3HHeJ_P0089205 Adgrl1 protein_coding protein_coding MGP_C3HHeJ_T0090112.1 MGP_C3HHeJ_G0033827.1 mouse_genomes_project 8 113710835 113715638 - Ldhd protein_coding retained_intron MGP_C3HHeJ_T0090113.1 MGP_C3HHeJ_G0033827.1 mouse_genomes_project 8 113712553 113717386 - Ldhd protein_coding retained_intron MGP_C3HHeJ_T0090114.1 MGP_C3HHeJ_G0033827.1 mouse_genomes_project 8 113713321 113717425 - MGP_C3HHeJ_P0090114 Ldhd protein_coding protein_coding MGP_C3HHeJ_T0089239.1 MGP_C3HHeJ_G0033544.1 mouse_genomes_project 8 84742042 84745791 - MGP_C3HHeJ_P0089239 Nanos3 protein_coding protein_coding MGP_C3HHeJ_T0005325.1 MGP_C3HHeJ_G0004506.1 mouse_genomes_project 8 122473152 122482253 - Gm15684 antisense antisense MGP_C3HHeJ_T0088450.1 MGP_C3HHeJ_G0033300.1 mouse_genomes_project 8 54103375 54142112 + MGP_C3HHeJ_P0088450 Asb5 protein_coding protein_coding MGP_C3HHeJ_T0089333.1 MGP_C3HHeJ_G0033564.1 mouse_genomes_project 8 85514625 85518634 + MGP_C3HHeJ_P0089333 Klf1 protein_coding protein_coding MGP_C3HHeJ_T0087897.1 MGP_C3HHeJ_G0033108.1 mouse_genomes_project 8 16782226 16783082 + MGP_C3HHeJ_P0087897 Defb14 protein_coding protein_coding MGP_C3HHeJ_T0088762.1 MGP_C3HHeJ_G0033388.1 mouse_genomes_project 8 70258640 70268678 - MGP_C3HHeJ_P0088762 Ddx49 protein_coding protein_coding MGP_C3HHeJ_T0088763.1 MGP_C3HHeJ_G0033388.1 mouse_genomes_project 8 70258651 70268641 - Ddx49 protein_coding retained_intron MGP_C3HHeJ_T0088764.1 MGP_C3HHeJ_G0033388.1 mouse_genomes_project 8 70259360 70261511 - Ddx49 protein_coding retained_intron MGP_C3HHeJ_T0088765.1 MGP_C3HHeJ_G0033388.1 mouse_genomes_project 8 70260571 70268665 - MGP_C3HHeJ_P0088765 Ddx49 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088766.1 MGP_C3HHeJ_G0033388.1 mouse_genomes_project 8 70261593 70268652 - Ddx49 protein_coding retained_intron MGP_C3HHeJ_T0088767.1 MGP_C3HHeJ_G0033388.1 mouse_genomes_project 8 70266760 70268623 - Ddx49 protein_coding retained_intron MGP_C3HHeJ_T0088664.1 MGP_C3HHeJ_G0033365.1 mouse_genomes_project 8 69726964 69743384 + MGP_C3HHeJ_P0088664 Atp13a1 protein_coding protein_coding MGP_C3HHeJ_T0088570.1 MGP_C3HHeJ_G0033334.1 mouse_genomes_project 8 64773719 64779714 - MGP_C3HHeJ_P0088570 Trim75 protein_coding protein_coding MGP_C3HHeJ_T0090602.1 MGP_C3HHeJ_G0033979.1 mouse_genomes_project 8 129245443 129250779 - MGP_C3HHeJ_P0090602 Irf2bp2 protein_coding protein_coding MGP_C3HHeJ_T0089943.1 MGP_C3HHeJ_G0033778.1 mouse_genomes_project 8 108856896 108859382 - MGP_C3HHeJ_P0089943 Pdf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089946.1 MGP_C3HHeJ_G0033778.1 mouse_genomes_project 8 108858715 108861537 - MGP_C3HHeJ_P0089946 Pdf protein_coding protein_coding MGP_C3HHeJ_T0089901.1 MGP_C3HHeJ_G0033761.1 mouse_genomes_project 8 107807157 107886652 + MGP_C3HHeJ_P0089901 Nfatc3 protein_coding protein_coding MGP_C3HHeJ_T0089228.1 MGP_C3HHeJ_G0033540.1 mouse_genomes_project 8 84658279 84666742 - MGP_C3HHeJ_P0089228 Dcaf15 protein_coding protein_coding MGP_C3HHeJ_T0089229.1 MGP_C3HHeJ_G0033540.1 mouse_genomes_project 8 84658657 84666807 - MGP_C3HHeJ_P0089229 Dcaf15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100873.1 MGP_C3HHeJ_G0039067.1 mouse_genomes_project 8 11354537 11354667 + Gm24698 snoRNA snoRNA MGP_C3HHeJ_T0089452.1 MGP_C3HHeJ_G0033596.1 mouse_genomes_project 8 87383640 87384545 + MGP_C3HHeJ_P0089452 Gm10638 protein_coding protein_coding MGP_C3HHeJ_T0088309.1 MGP_C3HHeJ_G0033264.1 mouse_genomes_project 8 44517864 44533928 - MGP_C3HHeJ_P0088309 Tlr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089739.1 MGP_C3HHeJ_G0033697.1 mouse_genomes_project 8 106036450 106094374 - MGP_C3HHeJ_P0089739 Terb1 protein_coding protein_coding MGP_C3HHeJ_T0089740.1 MGP_C3HHeJ_G0033697.1 mouse_genomes_project 8 106036768 106094370 - MGP_C3HHeJ_P0089740 Terb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089741.1 MGP_C3HHeJ_G0033697.1 mouse_genomes_project 8 106036769 106094369 - MGP_C3HHeJ_P0089741 Terb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089742.1 MGP_C3HHeJ_G0033697.1 mouse_genomes_project 8 106037492 106094397 - MGP_C3HHeJ_P0089742 Terb1 protein_coding protein_coding MGP_C3HHeJ_T0009103.1 MGP_C3HHeJ_G0007307.1 mouse_genomes_project 8 123504214 123504478 + Gm28324 lincRNA lincRNA MGP_C3HHeJ_T0088833.1 MGP_C3HHeJ_G0033404.1 mouse_genomes_project 8 70598918 70602988 + MGP_C3HHeJ_P0088833 Lrrc25 protein_coding protein_coding MGP_C3HHeJ_T0009033.1 MGP_C3HHeJ_G0007258.1 mouse_genomes_project 8 77954405 77959034 + 1700092C02Rik lincRNA lincRNA MGP_C3HHeJ_T0089013.1 MGP_C3HHeJ_G0033461.1 mouse_genomes_project 8 72440087 72448704 - MGP_C3HHeJ_P0089013 Cib3 protein_coding protein_coding MGP_C3HHeJ_T0090003.1 MGP_C3HHeJ_G0033796.1 mouse_genomes_project 8 111631811 111651455 + MGP_C3HHeJ_P0090003 Zfp821 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010872.1 MGP_C3HHeJ_G0009005.1 mouse_genomes_project 8 34396848 34396975 - Gm44474 miRNA miRNA MGP_C3HHeJ_T0015804.1 MGP_C3HHeJ_G0013908.1 mouse_genomes_project 8 98504550 98505950 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0008992.1 MGP_C3HHeJ_G0007223.1 mouse_genomes_project 8 11300612 11302041 + lincRNA lincRNA MGP_C3HHeJ_T0015779.1 MGP_C3HHeJ_G0013883.1 mouse_genomes_project 8 72666115 72666518 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089779.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106870332 106924472 + MGP_C3HHeJ_P0089779 Cbfb protein_coding protein_coding MGP_C3HHeJ_T0089780.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106870402 106924464 + MGP_C3HHeJ_P0089780 Cbfb protein_coding protein_coding MGP_C3HHeJ_T0089781.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106870402 106924464 + MGP_C3HHeJ_P0089781 Cbfb protein_coding protein_coding MGP_C3HHeJ_T0089782.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106870603 106924464 + MGP_C3HHeJ_P0089782 Cbfb protein_coding protein_coding MGP_C3HHeJ_T0089783.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106870767 106878262 + Cbfb protein_coding retained_intron MGP_C3HHeJ_T0089784.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106871150 106895130 + Cbfb protein_coding processed_transcript MGP_C3HHeJ_T0089785.1 MGP_C3HHeJ_G0033714.1 mouse_genomes_project 8 106871222 106895110 + Cbfb protein_coding processed_transcript MGP_C3HHeJ_T0005336.1 MGP_C3HHeJ_G0004516.1 mouse_genomes_project 8 128530296 128540215 + A730098A19Rik antisense antisense MGP_C3HHeJ_T0090192.1 MGP_C3HHeJ_G0033862.1 mouse_genomes_project 8 120156150 120166477 - MGP_C3HHeJ_P0090192 Mphosph6 protein_coding protein_coding MGP_C3HHeJ_T0100928.1 MGP_C3HHeJ_G0039122.1 mouse_genomes_project 8 112930803 112930951 + Gm26132 snoRNA snoRNA MGP_C3HHeJ_T0090605.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768040 130335119 + MGP_C3HHeJ_P0090605 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090606.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768203 130147525 + MGP_C3HHeJ_P0090606 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090607.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768203 130335434 + MGP_C3HHeJ_P0090607 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090608.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768217 130116232 + MGP_C3HHeJ_P0090608 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090609.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768245 130125820 + Pard3 protein_coding retained_intron MGP_C3HHeJ_T0090610.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768392 130335119 + MGP_C3HHeJ_P0090610 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090611.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768406 130084301 + MGP_C3HHeJ_P0090611 Pard3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090612.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768406 129989871 + MGP_C3HHeJ_P0090612 Pard3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090613.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768442 130333956 + MGP_C3HHeJ_P0090613 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090614.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768442 130333956 + MGP_C3HHeJ_P0090614 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090615.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768492 130141399 + MGP_C3HHeJ_P0090615 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090616.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768492 130335119 + MGP_C3HHeJ_P0090616 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090617.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768492 130189633 + MGP_C3HHeJ_P0090617 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090618.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768492 130141399 + MGP_C3HHeJ_P0090618 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090619.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768492 130141399 + MGP_C3HHeJ_P0090619 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090620.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129768494 130141330 + MGP_C3HHeJ_P0090620 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090621.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 129777337 130141330 + MGP_C3HHeJ_P0090621 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090622.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130012346 130116232 + MGP_C3HHeJ_P0090622 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090623.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130012373 130147844 + MGP_C3HHeJ_P0090623 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090624.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130019072 130115713 + MGP_C3HHeJ_P0090624 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090625.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130070481 130075858 + Pard3 protein_coding retained_intron MGP_C3HHeJ_T0090626.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130071377 130112289 + MGP_C3HHeJ_P0090626 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090627.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130085418 130090897 + Pard3 protein_coding retained_intron MGP_C3HHeJ_T0090628.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130103223 130114334 + MGP_C3HHeJ_P0090628 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090629.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130119054 130147841 + MGP_C3HHeJ_P0090629 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090630.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130124268 130189524 + Pard3 protein_coding retained_intron MGP_C3HHeJ_T0090631.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130162415 130189540 + MGP_C3HHeJ_P0090631 Pard3 protein_coding protein_coding MGP_C3HHeJ_T0090632.1 MGP_C3HHeJ_G0033982.1 mouse_genomes_project 8 130299859 130333999 + Pard3 protein_coding processed_transcript MGP_C3HHeJ_T0087635.1 MGP_C3HHeJ_G0033024.1 mouse_genomes_project 8 1227963 1231173 + MGP_C3HHeJ_P0087635 Tgfbr3l protein_coding protein_coding MGP_C3HHeJ_T0087636.1 MGP_C3HHeJ_G0033024.1 mouse_genomes_project 8 1228382 1229271 + Tgfbr3l protein_coding processed_transcript MGP_C3HHeJ_T0087637.1 MGP_C3HHeJ_G0033024.1 mouse_genomes_project 8 1230078 1231173 + Tgfbr3l protein_coding processed_transcript MGP_C3HHeJ_T0087834.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11584222 12357966 + MGP_C3HHeJ_P0087834 Dlgap2 protein_coding protein_coding MGP_C3HHeJ_T0087835.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11584232 12358538 + MGP_C3HHeJ_P0087835 Dlgap2 protein_coding protein_coding MGP_C3HHeJ_T0087836.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11678035 12357566 + MGP_C3HHeJ_P0087836 Dlgap2 protein_coding protein_coding MGP_C3HHeJ_T0087837.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11678035 12357966 + MGP_C3HHeJ_P0087837 Dlgap2 protein_coding protein_coding MGP_C3HHeJ_T0087838.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11890844 12018635 + Dlgap2 protein_coding processed_transcript MGP_C3HHeJ_T0087839.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11891058 12042793 + Dlgap2 protein_coding processed_transcript MGP_C3HHeJ_T0087840.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 11891106 12342629 + Dlgap2 protein_coding retained_intron MGP_C3HHeJ_T0087841.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 12256229 12275925 + Dlgap2 protein_coding processed_transcript MGP_C3HHeJ_T0087843.1 MGP_C3HHeJ_G0033089.1 mouse_genomes_project 8 12294317 12358256 + Dlgap2 protein_coding processed_transcript MGP_C3HHeJ_T0089413.1 MGP_C3HHeJ_G0033586.1 mouse_genomes_project 8 85907312 85915461 + MGP_C3HHeJ_P0089413 Orc6 protein_coding protein_coding MGP_C3HHeJ_T0005297.1 MGP_C3HHeJ_G0004482.1 mouse_genomes_project 8 69004621 69005332 + antisense antisense MGP_C3HHeJ_T0010881.1 MGP_C3HHeJ_G0009014.1 mouse_genomes_project 8 70804550 70804608 + Mir7240 miRNA miRNA MGP_C3HHeJ_T0088452.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54185023 54280210 - MGP_C3HHeJ_P0088452 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088453.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54185201 54285919 - MGP_C3HHeJ_P0088453 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088454.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54185581 54206614 - Wdr17 protein_coding retained_intron MGP_C3HHeJ_T0088455.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54185590 54285899 - MGP_C3HHeJ_P0088455 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088456.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54185602 54263083 - MGP_C3HHeJ_P0088456 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088457.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54207220 54212174 - Wdr17 protein_coding retained_intron MGP_C3HHeJ_T0088458.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54223485 54249348 - MGP_C3HHeJ_P0088458 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088459.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54223529 54285881 - Wdr17 protein_coding processed_transcript MGP_C3HHeJ_T0088460.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54246638 54285879 - MGP_C3HHeJ_P0088460 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088461.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54246970 54286005 - Wdr17 protein_coding processed_transcript MGP_C3HHeJ_T0088462.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54252529 54444750 - MGP_C3HHeJ_P0088462 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088463.1 MGP_C3HHeJ_G0033302.1 mouse_genomes_project 8 54255567 54266048 - MGP_C3HHeJ_P0088463 Wdr17 protein_coding protein_coding MGP_C3HHeJ_T0088400.1 MGP_C3HHeJ_G0033282.1 mouse_genomes_project 8 46366221 46552046 - MGP_C3HHeJ_P0088400 Stox2 protein_coding protein_coding MGP_C3HHeJ_T0088401.1 MGP_C3HHeJ_G0033282.1 mouse_genomes_project 8 46366221 46484446 - MGP_C3HHeJ_P0088401 Stox2 protein_coding protein_coding MGP_C3HHeJ_T0087944.1 MGP_C3HHeJ_G0033141.1 mouse_genomes_project 8 20443979 20462751 + MGP_C3HHeJ_P0087944 Mrps31 protein_coding protein_coding MGP_C3HHeJ_T0089681.1 MGP_C3HHeJ_G0033671.1 mouse_genomes_project 8 96368295 96383876 - MGP_C3HHeJ_P0089681 Cfap20 protein_coding protein_coding MGP_C3HHeJ_T0009100.1 MGP_C3HHeJ_G0007304.1 mouse_genomes_project 8 123074695 123075421 + Gm26739 lincRNA lincRNA MGP_C3HHeJ_T0005314.1 MGP_C3HHeJ_G0004496.1 mouse_genomes_project 8 111790120 111798569 - Gm17344 antisense antisense MGP_C3HHeJ_T0005315.1 MGP_C3HHeJ_G0004496.1 mouse_genomes_project 8 111791861 111798592 - Gm17344 antisense antisense MGP_C3HHeJ_T0089147.1 MGP_C3HHeJ_G0033511.1 mouse_genomes_project 8 83678059 83679153 - MGP_C3HHeJ_P0089147 Gm10645 protein_coding protein_coding MGP_C3HHeJ_T0089974.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109250558 109259635 - Nob1 protein_coding retained_intron MGP_C3HHeJ_T0089975.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109250558 109263114 - MGP_C3HHeJ_P0089975 Nob1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089976.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109250668 109263128 - MGP_C3HHeJ_P0089976 Nob1 protein_coding protein_coding MGP_C3HHeJ_T0089977.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109254310 109263059 - Nob1 protein_coding retained_intron MGP_C3HHeJ_T0089978.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109255767 109263124 - Nob1 protein_coding retained_intron MGP_C3HHeJ_T0089979.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109256128 109260400 - Nob1 protein_coding processed_transcript MGP_C3HHeJ_T0089980.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109256226 109256739 - Nob1 protein_coding retained_intron MGP_C3HHeJ_T0089981.1 MGP_C3HHeJ_G0033786.1 mouse_genomes_project 8 109256422 109263099 - MGP_C3HHeJ_P0089981 Nob1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090526.1 MGP_C3HHeJ_G0033952.1 mouse_genomes_project 8 126560452 126588404 + MGP_C3HHeJ_P0090526 Urb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090527.1 MGP_C3HHeJ_G0033952.1 mouse_genomes_project 8 126560734 126586532 + MGP_C3HHeJ_P0090527 Urb2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089735.1 MGP_C3HHeJ_G0033693.1 mouse_genomes_project 8 105889052 105901149 + MGP_C3HHeJ_P0089735 Cmtm2b protein_coding protein_coding MGP_C3HHeJ_T0009089.1 MGP_C3HHeJ_G0007295.1 mouse_genomes_project 8 107998807 108190123 - Gm26786 lincRNA lincRNA MGP_C3HHeJ_T0005307.1 MGP_C3HHeJ_G0004491.1 mouse_genomes_project 8 106250065 106262968 + 1700082M22Rik antisense antisense MGP_C3HHeJ_T0005308.1 MGP_C3HHeJ_G0004491.1 mouse_genomes_project 8 106256997 106262828 + 1700082M22Rik antisense antisense MGP_C3HHeJ_T0089881.1 MGP_C3HHeJ_G0033754.1 mouse_genomes_project 8 107676296 107678961 - MGP_C3HHeJ_P0089881 Psmb10 protein_coding protein_coding MGP_C3HHeJ_T0010864.1 MGP_C3HHeJ_G0008997.1 mouse_genomes_project 8 13682756 13682838 - Mir3106 miRNA miRNA MGP_C3HHeJ_T0002289.1 MGP_C3HHeJ_G0002209.1 mouse_genomes_project 8 10728131 10730246 - TEC TEC MGP_C3HHeJ_T0088533.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61177368 61585240 - MGP_C3HHeJ_P0088533 Palld protein_coding protein_coding MGP_C3HHeJ_T0088534.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61177374 61439367 - MGP_C3HHeJ_P0088534 Palld protein_coding protein_coding MGP_C3HHeJ_T0088535.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61177474 61268937 - MGP_C3HHeJ_P0088535 Palld protein_coding protein_coding MGP_C3HHeJ_T0088536.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61179045 61180021 - Palld protein_coding retained_intron MGP_C3HHeJ_T0088537.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61179141 61585261 - MGP_C3HHeJ_P0088537 Palld protein_coding protein_coding MGP_C3HHeJ_T0088538.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61180033 61261173 - MGP_C3HHeJ_P0088538 Palld protein_coding protein_coding MGP_C3HHeJ_T0088539.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61189222 61198693 - Palld protein_coding retained_intron MGP_C3HHeJ_T0088540.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61358240 61439376 - Palld protein_coding retained_intron MGP_C3HHeJ_T0088541.1 MGP_C3HHeJ_G0033324.1 mouse_genomes_project 8 61382042 61439367 - Palld protein_coding retained_intron MGP_C3HHeJ_T0087889.1 MGP_C3HHeJ_G0033101.1 mouse_genomes_project 8 16543568 16546883 - MGP_C3HHeJ_P0087889 Defb40 protein_coding protein_coding MGP_C3HHeJ_T0089230.1 MGP_C3HHeJ_G0033541.1 mouse_genomes_project 8 84692352 84698888 + MGP_C3HHeJ_P0089230 Podnl1 protein_coding protein_coding MGP_C3HHeJ_T0089231.1 MGP_C3HHeJ_G0033541.1 mouse_genomes_project 8 84694181 84698877 + Podnl1 protein_coding retained_intron MGP_C3HHeJ_T0010858.1 MGP_C3HHeJ_G0008991.1 mouse_genomes_project 8 10083705 10083809 + Gm26483 miRNA miRNA MGP_C3HHeJ_T0102320.1 MGP_C3HHeJ_G0040283.1 mouse_genomes_project 8 3364 5221 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100909.1 MGP_C3HHeJ_G0039103.1 mouse_genomes_project 8 73394584 73394724 - Gm22532 snoRNA snoRNA MGP_C3HHeJ_T0099630.1 MGP_C3HHeJ_G0037824.1 mouse_genomes_project 8 35068410 35068561 - Gm26150 snRNA snRNA MGP_C3HHeJ_T0088861.1 MGP_C3HHeJ_G0033418.1 mouse_genomes_project 8 70842378 70848134 - MGP_C3HHeJ_P0088861 Arrdc2 protein_coding protein_coding MGP_C3HHeJ_T0009044.1 MGP_C3HHeJ_G0007268.1 mouse_genomes_project 8 87553823 87570778 + Gm27167 lincRNA lincRNA MGP_C3HHeJ_T0089420.1 MGP_C3HHeJ_G0033589.1 mouse_genomes_project 8 86117995 86153481 + MGP_C3HHeJ_P0089420 Gpt2 protein_coding protein_coding MGP_C3HHeJ_T0089421.1 MGP_C3HHeJ_G0033589.1 mouse_genomes_project 8 86118026 86150604 + MGP_C3HHeJ_P0089421 Gpt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089422.1 MGP_C3HHeJ_G0033589.1 mouse_genomes_project 8 86118028 86118727 + Gpt2 protein_coding processed_transcript MGP_C3HHeJ_T0089423.1 MGP_C3HHeJ_G0033589.1 mouse_genomes_project 8 86141725 86147264 + Gpt2 protein_coding retained_intron MGP_C3HHeJ_T0089424.1 MGP_C3HHeJ_G0033589.1 mouse_genomes_project 8 86145186 86151614 + Gpt2 protein_coding processed_transcript MGP_C3HHeJ_T0089882.1 MGP_C3HHeJ_G0033755.1 mouse_genomes_project 8 107680119 107683951 - MGP_C3HHeJ_P0089882 Lcat protein_coding protein_coding MGP_C3HHeJ_T0088224.1 MGP_C3HHeJ_G0033236.1 mouse_genomes_project 8 37837423 37977104 + MGP_C3HHeJ_P0088224 Tusc3 protein_coding protein_coding MGP_C3HHeJ_T0015753.1 MGP_C3HHeJ_G0013857.1 mouse_genomes_project 8 18843245 18844390 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010906.1 MGP_C3HHeJ_G0009039.1 mouse_genomes_project 8 88821883 88821951 + Mir7071 miRNA miRNA MGP_C3HHeJ_T0089620.1 MGP_C3HHeJ_G0033652.1 mouse_genomes_project 8 95667517 95673617 + MGP_C3HHeJ_P0089620 Ccl22 protein_coding protein_coding MGP_C3HHeJ_T0089621.1 MGP_C3HHeJ_G0033652.1 mouse_genomes_project 8 95667607 95671791 + Ccl22 protein_coding processed_transcript MGP_C3HHeJ_T0090126.1 MGP_C3HHeJ_G0033836.1 mouse_genomes_project 8 114070994 114095040 - MGP_C3HHeJ_P0090126 Adat1 protein_coding protein_coding MGP_C3HHeJ_T0090127.1 MGP_C3HHeJ_G0033836.1 mouse_genomes_project 8 114073453 114095102 - MGP_C3HHeJ_P0090127 Adat1 protein_coding protein_coding MGP_C3HHeJ_T0015793.1 MGP_C3HHeJ_G0013897.1 mouse_genomes_project 8 83117739 83118697 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088292.1 MGP_C3HHeJ_G0033257.1 mouse_genomes_project 8 42699019 42702296 - MGP_C3HHeJ_P0088292 protein_coding protein_coding MGP_C3HHeJ_T0005306.1 MGP_C3HHeJ_G0004490.1 mouse_genomes_project 8 105719253 105726053 - Gm10631 antisense antisense MGP_C3HHeJ_T0005302.1 MGP_C3HHeJ_G0004486.1 mouse_genomes_project 8 85962425 85962849 + antisense antisense MGP_C3HHeJ_T0088144.1 MGP_C3HHeJ_G0033205.1 mouse_genomes_project 8 29613156 29622512 - MGP_C3HHeJ_P0088144 Mak16 protein_coding protein_coding MGP_C3HHeJ_T0089166.1 MGP_C3HHeJ_G0033520.1 mouse_genomes_project 8 84112150 84141952 - MGP_C3HHeJ_P0089166 Tecr protein_coding protein_coding MGP_C3HHeJ_T0089167.1 MGP_C3HHeJ_G0033520.1 mouse_genomes_project 8 84112150 84141952 - MGP_C3HHeJ_P0089167 Tecr protein_coding protein_coding MGP_C3HHeJ_T0089168.1 MGP_C3HHeJ_G0033520.1 mouse_genomes_project 8 84112150 84141890 - MGP_C3HHeJ_P0089168 Tecr protein_coding protein_coding MGP_C3HHeJ_T0088035.1 MGP_C3HHeJ_G0033168.1 mouse_genomes_project 8 23150775 23165473 - MGP_C3HHeJ_P0088035 Htra4 protein_coding protein_coding MGP_C3HHeJ_T0088036.1 MGP_C3HHeJ_G0033168.1 mouse_genomes_project 8 23154986 23163841 - Htra4 protein_coding retained_intron MGP_C3HHeJ_T0015800.1 MGP_C3HHeJ_G0013904.1 mouse_genomes_project 8 95320986 95321589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089240.1 MGP_C3HHeJ_G0033545.1 mouse_genomes_project 8 84781288 84811121 - MGP_C3HHeJ_P0089240 Zswim4 protein_coding protein_coding MGP_C3HHeJ_T0088037.1 MGP_C3HHeJ_G0033169.1 mouse_genomes_project 8 23165654 23234947 - MGP_C3HHeJ_P0088037 Plekha2 protein_coding protein_coding MGP_C3HHeJ_T0088038.1 MGP_C3HHeJ_G0033169.1 mouse_genomes_project 8 23167363 23234738 - MGP_C3HHeJ_P0088038 Plekha2 protein_coding protein_coding MGP_C3HHeJ_T0088039.1 MGP_C3HHeJ_G0033169.1 mouse_genomes_project 8 23169453 23234525 - MGP_C3HHeJ_P0088039 Plekha2 protein_coding protein_coding MGP_C3HHeJ_T0088040.1 MGP_C3HHeJ_G0033169.1 mouse_genomes_project 8 23193392 23224071 - MGP_C3HHeJ_P0088040 Plekha2 protein_coding protein_coding MGP_C3HHeJ_T0088149.1 MGP_C3HHeJ_G0033208.1 mouse_genomes_project 8 31737533 31897512 - MGP_C3HHeJ_P0088149 Wrn protein_coding protein_coding MGP_C3HHeJ_T0088150.1 MGP_C3HHeJ_G0033208.1 mouse_genomes_project 8 31737533 31897512 - MGP_C3HHeJ_P0088150 Wrn protein_coding protein_coding MGP_C3HHeJ_T0088101.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304585 24331127 + MGP_C3HHeJ_P0088101 protein_coding protein_coding MGP_C3HHeJ_T0088102.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304595 24327107 + MGP_C3HHeJ_P0088102 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088103.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304598 24326906 + MGP_C3HHeJ_P0088103 protein_coding protein_coding MGP_C3HHeJ_T0088104.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304603 24314358 + MGP_C3HHeJ_P0088104 protein_coding protein_coding MGP_C3HHeJ_T0088105.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304691 24314749 + MGP_C3HHeJ_P0088105 protein_coding protein_coding MGP_C3HHeJ_T0088106.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304781 24328453 + MGP_C3HHeJ_P0088106 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088107.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24304879 24314358 + MGP_C3HHeJ_P0088107 protein_coding protein_coding MGP_C3HHeJ_T0088108.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24305695 24311446 + MGP_C3HHeJ_P0088108 protein_coding protein_coding MGP_C3HHeJ_T0088109.1 MGP_C3HHeJ_G0033186.1 mouse_genomes_project 8 24309084 24326860 + MGP_C3HHeJ_P0088109 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089241.1 MGP_C3HHeJ_G0033546.1 mouse_genomes_project 8 84820563 84824870 - MGP_C3HHeJ_P0089241 D8Ertd738e protein_coding protein_coding MGP_C3HHeJ_T0088837.1 MGP_C3HHeJ_G0033407.1 mouse_genomes_project 8 70659762 70667075 + MGP_C3HHeJ_P0088837 Lsm4 protein_coding protein_coding MGP_C3HHeJ_T0088838.1 MGP_C3HHeJ_G0033407.1 mouse_genomes_project 8 70659946 70666371 + MGP_C3HHeJ_P0088838 Lsm4 protein_coding protein_coding MGP_C3HHeJ_T0088839.1 MGP_C3HHeJ_G0033407.1 mouse_genomes_project 8 70665987 70666439 + Lsm4 protein_coding retained_intron MGP_C3HHeJ_T0087832.1 MGP_C3HHeJ_G0033087.1 mouse_genomes_project 8 11510597 11578673 - MGP_C3HHeJ_P0087832 Erich1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0087939.1 MGP_C3HHeJ_G0033138.1 mouse_genomes_project 8 20250440 20288813 + MGP_C3HHeJ_P0087939 Thsd1 protein_coding protein_coding MGP_C3HHeJ_T0087940.1 MGP_C3HHeJ_G0033138.1 mouse_genomes_project 8 20250472 20287859 + MGP_C3HHeJ_P0087940 Thsd1 protein_coding protein_coding MGP_C3HHeJ_T0087941.1 MGP_C3HHeJ_G0033138.1 mouse_genomes_project 8 20250489 20287857 + Thsd1 protein_coding processed_transcript MGP_C3HHeJ_T0098550.1 MGP_C3HHeJ_G0036750.1 mouse_genomes_project 8 86640238 86642638 + Hm629797 sense_intronic sense_intronic MGP_C3HHeJ_T0088125.1 MGP_C3HHeJ_G0033194.1 mouse_genomes_project 8 25448869 25453965 - MGP_C3HHeJ_P0088125 Got1l1 protein_coding protein_coding MGP_C3HHeJ_T0005259.1 MGP_C3HHeJ_G0004452.1 mouse_genomes_project 8 10318088 10334562 - Gm15351 antisense antisense MGP_C3HHeJ_T0005260.1 MGP_C3HHeJ_G0004452.1 mouse_genomes_project 8 10331468 10334701 - Gm15351 antisense antisense MGP_C3HHeJ_T0005261.1 MGP_C3HHeJ_G0004452.1 mouse_genomes_project 8 10333524 10334416 - Gm15351 antisense antisense MGP_C3HHeJ_T0100884.1 MGP_C3HHeJ_G0039078.1 mouse_genomes_project 8 23778981 23779112 - Gm23184 snoRNA snoRNA MGP_C3HHeJ_T0010880.1 MGP_C3HHeJ_G0009013.1 mouse_genomes_project 8 70054733 70054796 - Mir7066 miRNA miRNA MGP_C3HHeJ_T0009097.1 MGP_C3HHeJ_G0007301.1 mouse_genomes_project 8 122540361 122542684 + A130014A01Rik lincRNA lincRNA MGP_C3HHeJ_T0002297.1 MGP_C3HHeJ_G0002216.1 mouse_genomes_project 8 101254987 101257004 + TEC TEC MGP_C3HHeJ_T0088577.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65410145 66316278 + protein_coding processed_transcript MGP_C3HHeJ_T0088578.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65410254 66315689 + MGP_C3HHeJ_P0088578 protein_coding protein_coding MGP_C3HHeJ_T0088579.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65410270 66316031 + MGP_C3HHeJ_P0088579 protein_coding protein_coding MGP_C3HHeJ_T0088580.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65410282 65772715 + protein_coding retained_intron MGP_C3HHeJ_T0088581.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65410331 66317958 + MGP_C3HHeJ_P0088581 protein_coding protein_coding MGP_C3HHeJ_T0088582.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65410770 66316748 + MGP_C3HHeJ_P0088582 protein_coding protein_coding MGP_C3HHeJ_T0088583.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65771543 66317946 + MGP_C3HHeJ_P0088583 protein_coding protein_coding MGP_C3HHeJ_T0088584.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65944703 66317946 + MGP_C3HHeJ_P0088584 protein_coding protein_coding MGP_C3HHeJ_T0088585.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 65944703 66317946 + MGP_C3HHeJ_P0088585 protein_coding protein_coding MGP_C3HHeJ_T0088586.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 66229651 66316742 + MGP_C3HHeJ_P0088586 protein_coding protein_coding MGP_C3HHeJ_T0088587.1 MGP_C3HHeJ_G0033338.1 mouse_genomes_project 8 66229658 66316752 + MGP_C3HHeJ_P0088587 protein_coding protein_coding MGP_C3HHeJ_T0089683.1 MGP_C3HHeJ_G0033673.1 mouse_genomes_project 8 96487341 96513886 + MGP_C3HHeJ_P0089683 Ccdc113 protein_coding protein_coding MGP_C3HHeJ_T0005311.1 MGP_C3HHeJ_G0004493.1 mouse_genomes_project 8 107674901 107686412 + Gm16156 antisense antisense MGP_C3HHeJ_T0088160.1 MGP_C3HHeJ_G0033214.1 mouse_genomes_project 8 32175339 32197553 + Gsr protein_coding processed_transcript MGP_C3HHeJ_T0088161.1 MGP_C3HHeJ_G0033214.1 mouse_genomes_project 8 32176383 32222282 + MGP_C3HHeJ_P0088161 Gsr protein_coding protein_coding MGP_C3HHeJ_T0088162.1 MGP_C3HHeJ_G0033214.1 mouse_genomes_project 8 32192556 32208787 + Gsr protein_coding processed_transcript MGP_C3HHeJ_T0090153.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116613016 117591401 + MGP_C3HHeJ_P0090153 Wwox protein_coding protein_coding MGP_C3HHeJ_T0090154.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116613056 117061233 + MGP_C3HHeJ_P0090154 Wwox protein_coding protein_coding MGP_C3HHeJ_T0090155.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116613056 116902979 + MGP_C3HHeJ_P0090155 Wwox protein_coding protein_coding MGP_C3HHeJ_T0090156.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116613063 116627164 + Wwox protein_coding processed_transcript MGP_C3HHeJ_T0090157.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116613063 116648478 + MGP_C3HHeJ_P0090157 Wwox protein_coding protein_coding MGP_C3HHeJ_T0090158.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116621571 116690320 + Wwox protein_coding processed_transcript MGP_C3HHeJ_T0090159.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116785351 116889126 + Wwox protein_coding processed_transcript MGP_C3HHeJ_T0090160.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116894928 117590836 + Wwox protein_coding processed_transcript MGP_C3HHeJ_T0090161.1 MGP_C3HHeJ_G0033846.1 mouse_genomes_project 8 116894928 117240271 + Wwox protein_coding processed_transcript MGP_C3HHeJ_T0009116.1 MGP_C3HHeJ_G0007316.1 mouse_genomes_project 8 124390166 124390978 - lincRNA lincRNA MGP_C3HHeJ_T0010929.1 MGP_C3HHeJ_G0009062.1 mouse_genomes_project 8 119794637 119794694 + Mir7077 miRNA miRNA MGP_C3HHeJ_T0097929.1 MGP_C3HHeJ_G0036141.1 mouse_genomes_project 8 7142949 7143299 - pseudogene pseudogene MGP_C3HHeJ_T0009026.1 MGP_C3HHeJ_G0007252.1 mouse_genomes_project 8 68094972 68100359 - lincRNA lincRNA MGP_C3HHeJ_T0089718.1 MGP_C3HHeJ_G0033685.1 mouse_genomes_project 8 104005454 104022389 - MGP_C3HHeJ_P0089718 protein_coding protein_coding MGP_C3HHeJ_T0087688.1 MGP_C3HHeJ_G0033046.1 mouse_genomes_project 8 8642053 8780479 + MGP_C3HHeJ_P0087688 Col4a2 protein_coding protein_coding MGP_C3HHeJ_T0087689.1 MGP_C3HHeJ_G0033046.1 mouse_genomes_project 8 8736596 8752944 + MGP_C3HHeJ_P0087689 Col4a2 protein_coding protein_coding MGP_C3HHeJ_T0087690.1 MGP_C3HHeJ_G0033046.1 mouse_genomes_project 8 8772300 8774894 + Col4a2 protein_coding processed_transcript MGP_C3HHeJ_T0089858.1 MGP_C3HHeJ_G0033741.1 mouse_genomes_project 8 107429107 107431447 + MGP_C3HHeJ_P0089858 Pard6a protein_coding protein_coding MGP_C3HHeJ_T0089859.1 MGP_C3HHeJ_G0033741.1 mouse_genomes_project 8 107429600 107431446 + MGP_C3HHeJ_P0089859 Pard6a protein_coding protein_coding MGP_C3HHeJ_T0088416.1 MGP_C3HHeJ_G0033287.1 mouse_genomes_project 8 46899888 46901550 + MGP_C3HHeJ_P0088416 protein_coding protein_coding MGP_C3HHeJ_T0098195.1 MGP_C3HHeJ_G0036407.1 mouse_genomes_project 8 72344807 72344894 + Gm24747 rRNA rRNA MGP_C3HHeJ_T0015776.1 MGP_C3HHeJ_G0013880.1 mouse_genomes_project 8 65621014 65621299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089318.1 MGP_C3HHeJ_G0033561.1 mouse_genomes_project 8 85466441 85478461 + MGP_C3HHeJ_P0089318 Farsa protein_coding protein_coding MGP_C3HHeJ_T0089319.1 MGP_C3HHeJ_G0033561.1 mouse_genomes_project 8 85466447 85478460 + Farsa protein_coding retained_intron MGP_C3HHeJ_T0089320.1 MGP_C3HHeJ_G0033561.1 mouse_genomes_project 8 85466461 85476226 + Farsa protein_coding retained_intron MGP_C3HHeJ_T0089321.1 MGP_C3HHeJ_G0033561.1 mouse_genomes_project 8 85466469 85478461 + MGP_C3HHeJ_P0089321 Farsa protein_coding protein_coding MGP_C3HHeJ_T0089322.1 MGP_C3HHeJ_G0033561.1 mouse_genomes_project 8 85466472 85478460 + MGP_C3HHeJ_P0089322 Farsa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089323.1 MGP_C3HHeJ_G0033561.1 mouse_genomes_project 8 85476766 85478214 + Farsa protein_coding retained_intron MGP_C3HHeJ_T0087969.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21035852 21217722 + MGP_C3HHeJ_P0087969 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087970.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21035890 21218284 + MGP_C3HHeJ_P0087970 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087971.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21036144 21216096 + MGP_C3HHeJ_P0087971 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087972.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21097769 21216579 + MGP_C3HHeJ_P0087972 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087973.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21097798 21217070 + MGP_C3HHeJ_P0087973 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087974.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21097901 21217070 + MGP_C3HHeJ_P0087974 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087975.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21121539 21218287 + MGP_C3HHeJ_P0087975 Ank1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087976.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21121555 21218287 + MGP_C3HHeJ_P0087976 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087977.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21121591 21218287 + MGP_C3HHeJ_P0087977 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087978.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21121805 21217477 + MGP_C3HHeJ_P0087978 Ank1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087979.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21121805 21217477 + MGP_C3HHeJ_P0087979 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087980.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21158980 21190809 + MGP_C3HHeJ_P0087980 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087981.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21188085 21195096 + Ank1 protein_coding retained_intron MGP_C3HHeJ_T0087982.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21207017 21217068 + MGP_C3HHeJ_P0087982 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087983.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21207092 21216483 + MGP_C3HHeJ_P0087983 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087984.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21207264 21216094 + MGP_C3HHeJ_P0087984 Ank1 protein_coding protein_coding MGP_C3HHeJ_T0087985.1 MGP_C3HHeJ_G0033151.1 mouse_genomes_project 8 21208080 21216158 + Ank1 protein_coding retained_intron MGP_C3HHeJ_T0089653.1 MGP_C3HHeJ_G0033661.1 mouse_genomes_project 8 95909481 95947904 + MGP_C3HHeJ_P0089653 Adgrg1 protein_coding protein_coding MGP_C3HHeJ_T0089654.1 MGP_C3HHeJ_G0033661.1 mouse_genomes_project 8 95916779 95947904 + MGP_C3HHeJ_P0089654 Adgrg1 protein_coding protein_coding MGP_C3HHeJ_T0089540.1 MGP_C3HHeJ_G0033624.1 mouse_genomes_project 8 93827980 93867414 + MGP_C3HHeJ_P0089540 Slc6a2 protein_coding protein_coding MGP_C3HHeJ_T0089541.1 MGP_C3HHeJ_G0033624.1 mouse_genomes_project 8 93828949 93870162 + MGP_C3HHeJ_P0089541 Slc6a2 protein_coding protein_coding MGP_C3HHeJ_T0010931.1 MGP_C3HHeJ_G0009064.1 mouse_genomes_project 8 119890346 119890401 - Gm27361 miRNA miRNA MGP_C3HHeJ_T0088131.1 MGP_C3HHeJ_G0033198.1 mouse_genomes_project 8 25682474 25693080 - MGP_C3HHeJ_P0088131 Chrna6 protein_coding protein_coding MGP_C3HHeJ_T0100886.1 MGP_C3HHeJ_G0039080.1 mouse_genomes_project 8 29604039 29604143 - Snord13 snoRNA snoRNA MGP_C3HHeJ_T0089324.1 MGP_C3HHeJ_G0033562.1 mouse_genomes_project 8 85481313 85499467 + MGP_C3HHeJ_P0089324 Syce2 protein_coding protein_coding MGP_C3HHeJ_T0089325.1 MGP_C3HHeJ_G0033562.1 mouse_genomes_project 8 85481313 85500232 + MGP_C3HHeJ_P0089325 Syce2 protein_coding protein_coding MGP_C3HHeJ_T0089326.1 MGP_C3HHeJ_G0033562.1 mouse_genomes_project 8 85481394 85499477 + MGP_C3HHeJ_P0089326 Syce2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089327.1 MGP_C3HHeJ_G0033562.1 mouse_genomes_project 8 85481639 85498002 + Syce2 protein_coding retained_intron MGP_C3HHeJ_T0089122.1 MGP_C3HHeJ_G0033502.1 mouse_genomes_project 8 80946858 80964482 + MGP_C3HHeJ_P0089122 Gypa protein_coding protein_coding MGP_C3HHeJ_T0087554.1 MGP_C3HHeJ_G0033003.1 mouse_genomes_project 8 455520 484510 + MGP_C3HHeJ_P0087554 Pnpla6 protein_coding protein_coding MGP_C3HHeJ_T0087555.1 MGP_C3HHeJ_G0033003.1 mouse_genomes_project 8 455520 484510 + MGP_C3HHeJ_P0087555 Pnpla6 protein_coding protein_coding MGP_C3HHeJ_T0089795.1 MGP_C3HHeJ_G0033717.1 mouse_genomes_project 8 106966416 106972447 - MGP_C3HHeJ_P0089795 Tradd protein_coding protein_coding MGP_C3HHeJ_T0089796.1 MGP_C3HHeJ_G0033717.1 mouse_genomes_project 8 106967320 106968251 - Tradd protein_coding retained_intron MGP_C3HHeJ_T0089797.1 MGP_C3HHeJ_G0033717.1 mouse_genomes_project 8 106967413 106972419 - MGP_C3HHeJ_P0089797 Tradd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089798.1 MGP_C3HHeJ_G0033717.1 mouse_genomes_project 8 106967887 106972441 - MGP_C3HHeJ_P0089798 Tradd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087534.1 MGP_C3HHeJ_G0032998.1 mouse_genomes_project 8 322018 382027 + Arhgef18 protein_coding retained_intron MGP_C3HHeJ_T0087535.1 MGP_C3HHeJ_G0032998.1 mouse_genomes_project 8 322050 387988 + MGP_C3HHeJ_P0087535 Arhgef18 protein_coding protein_coding MGP_C3HHeJ_T0087536.1 MGP_C3HHeJ_G0032998.1 mouse_genomes_project 8 322085 359199 + Arhgef18 protein_coding processed_transcript MGP_C3HHeJ_T0087537.1 MGP_C3HHeJ_G0032998.1 mouse_genomes_project 8 322085 359567 + MGP_C3HHeJ_P0087537 Arhgef18 protein_coding protein_coding MGP_C3HHeJ_T0087538.1 MGP_C3HHeJ_G0032998.1 mouse_genomes_project 8 367105 387987 + Arhgef18 protein_coding retained_intron MGP_C3HHeJ_T0087539.1 MGP_C3HHeJ_G0032998.1 mouse_genomes_project 8 382144 385655 + Arhgef18 protein_coding retained_intron MGP_C3HHeJ_T0090097.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113619013 113712771 + MGP_C3HHeJ_P0090097 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090098.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113619528 113713081 + MGP_C3HHeJ_P0090098 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090099.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113619528 113713081 + MGP_C3HHeJ_P0090099 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090100.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113619730 113710829 + MGP_C3HHeJ_P0090100 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090101.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113620008 113710024 + MGP_C3HHeJ_P0090101 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090102.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113620158 113712777 + MGP_C3HHeJ_P0090102 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090103.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113620351 113708987 + MGP_C3HHeJ_P0090103 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090104.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113620375 113709552 + MGP_C3HHeJ_P0090104 Znrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090105.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113621231 113709622 + MGP_C3HHeJ_P0090105 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090106.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113621231 113713081 + MGP_C3HHeJ_P0090106 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090107.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113621353 113695592 + Znrf1 protein_coding processed_transcript MGP_C3HHeJ_T0090108.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113624141 113708715 + MGP_C3HHeJ_P0090108 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0090109.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113646255 113693024 + Znrf1 protein_coding processed_transcript MGP_C3HHeJ_T0090110.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113692975 113710013 + MGP_C3HHeJ_P0090110 Znrf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090111.1 MGP_C3HHeJ_G0033826.1 mouse_genomes_project 8 113695523 113708826 + MGP_C3HHeJ_P0090111 Znrf1 protein_coding protein_coding MGP_C3HHeJ_T0089754.1 MGP_C3HHeJ_G0033699.1 mouse_genomes_project 8 106129108 106138555 + MGP_C3HHeJ_P0089754 Car7 protein_coding protein_coding MGP_C3HHeJ_T0089755.1 MGP_C3HHeJ_G0033699.1 mouse_genomes_project 8 106136087 106137271 + Car7 protein_coding retained_intron MGP_C3HHeJ_T0088442.1 MGP_C3HHeJ_G0033297.1 mouse_genomes_project 8 53106511 53157418 - MGP_C3HHeJ_P0088442 Neil3 protein_coding protein_coding MGP_C3HHeJ_T0088443.1 MGP_C3HHeJ_G0033297.1 mouse_genomes_project 8 53124897 53130610 - Neil3 protein_coding processed_transcript MGP_C3HHeJ_T0088444.1 MGP_C3HHeJ_G0033297.1 mouse_genomes_project 8 53124897 53130664 - MGP_C3HHeJ_P0088444 Neil3 protein_coding protein_coding MGP_C3HHeJ_T0088445.1 MGP_C3HHeJ_G0033297.1 mouse_genomes_project 8 53124923 53131745 - MGP_C3HHeJ_P0088445 Neil3 protein_coding protein_coding MGP_C3HHeJ_T0088446.1 MGP_C3HHeJ_G0033297.1 mouse_genomes_project 8 53125576 53157319 - Neil3 protein_coding retained_intron MGP_C3HHeJ_T0088447.1 MGP_C3HHeJ_G0033297.1 mouse_genomes_project 8 53128688 53157031 - MGP_C3HHeJ_P0088447 Neil3 protein_coding protein_coding MGP_C3HHeJ_T0090581.1 MGP_C3HHeJ_G0033970.1 mouse_genomes_project 8 128029999 128136001 - MGP_C3HHeJ_P0090581 Sipa1l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010907.1 MGP_C3HHeJ_G0009040.1 mouse_genomes_project 8 89749609 89749708 + Mir8110 miRNA miRNA MGP_C3HHeJ_T0089870.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107618787 107631132 + MGP_C3HHeJ_P0089870 Edc4 protein_coding protein_coding MGP_C3HHeJ_T0089871.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107618857 107631115 + MGP_C3HHeJ_P0089871 Edc4 protein_coding protein_coding MGP_C3HHeJ_T0089872.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107618983 107632815 + MGP_C3HHeJ_P0089872 Edc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089873.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107624875 107626052 + Edc4 protein_coding retained_intron MGP_C3HHeJ_T0089874.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107625284 107627439 + MGP_C3HHeJ_P0089874 Edc4 protein_coding protein_coding MGP_C3HHeJ_T0089875.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107625298 107626620 + MGP_C3HHeJ_P0089875 Edc4 protein_coding protein_coding MGP_C3HHeJ_T0089876.1 MGP_C3HHeJ_G0033750.1 mouse_genomes_project 8 107628174 107629235 + Edc4 protein_coding retained_intron MGP_C3HHeJ_T0015740.1 MGP_C3HHeJ_G0013844.1 mouse_genomes_project 8 1854100 1854496 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0088084.1 MGP_C3HHeJ_G0033179.1 mouse_genomes_project 8 23984272 23990567 + MGP_C3HHeJ_P0088084 Star protein_coding protein_coding MGP_C3HHeJ_T0015805.1 MGP_C3HHeJ_G0013909.1 mouse_genomes_project 8 98637150 98638128 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002290.1 MGP_C3HHeJ_G0002210.1 mouse_genomes_project 8 12546613 12550713 - TEC TEC MGP_C3HHeJ_T0002291.1 MGP_C3HHeJ_G0002211.1 mouse_genomes_project 8 21277655 21278506 + TEC TEC MGP_C3HHeJ_T0015803.1 MGP_C3HHeJ_G0013907.1 mouse_genomes_project 8 96533476 96534917 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089961.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109124723 109164609 + Nfat5 protein_coding retained_intron MGP_C3HHeJ_T0089962.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109124723 109217597 + MGP_C3HHeJ_P0089962 Nfat5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089963.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109124723 109208720 + MGP_C3HHeJ_P0089963 Nfat5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089964.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109124762 109162706 + Nfat5 protein_coding retained_intron MGP_C3HHeJ_T0089965.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109124812 109217588 + MGP_C3HHeJ_P0089965 Nfat5 protein_coding protein_coding MGP_C3HHeJ_T0089966.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109124812 109208671 + MGP_C3HHeJ_P0089966 Nfat5 protein_coding protein_coding MGP_C3HHeJ_T0089967.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109125079 109210972 + MGP_C3HHeJ_P0089967 Nfat5 protein_coding protein_coding MGP_C3HHeJ_T0089968.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109173749 109192398 + Nfat5 protein_coding retained_intron MGP_C3HHeJ_T0089969.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109173749 109203898 + Nfat5 protein_coding retained_intron MGP_C3HHeJ_T0089970.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109174154 109207152 + MGP_C3HHeJ_P0089970 Nfat5 protein_coding protein_coding MGP_C3HHeJ_T0089971.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109180018 109198262 + MGP_C3HHeJ_P0089971 Nfat5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089972.1 MGP_C3HHeJ_G0033784.1 mouse_genomes_project 8 109192477 109210023 + MGP_C3HHeJ_P0089972 Nfat5 protein_coding protein_coding MGP_C3HHeJ_T0010914.1 MGP_C3HHeJ_G0009047.1 mouse_genomes_project 8 106316002 106316077 - Gm44328 miRNA miRNA MGP_C3HHeJ_T0089504.1 MGP_C3HHeJ_G0033613.1 mouse_genomes_project 8 91702285 91702762 - MGP_C3HHeJ_P0089504 protein_coding protein_coding MGP_C3HHeJ_T0100880.1 MGP_C3HHeJ_G0039074.1 mouse_genomes_project 8 16499342 16499445 + Gm22551 snoRNA snoRNA MGP_C3HHeJ_T0011623.1 MGP_C3HHeJ_G0009756.1 mouse_genomes_project 8 45261038 45261311 + Gm23030 misc_RNA misc_RNA MGP_C3HHeJ_T0087547.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 438251 455369 + MGP_C3HHeJ_P0087547 Mcoln1 protein_coding protein_coding MGP_C3HHeJ_T0087548.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 438298 447078 + MGP_C3HHeJ_P0087548 Mcoln1 protein_coding protein_coding MGP_C3HHeJ_T0087549.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 445915 455369 + Mcoln1 protein_coding retained_intron MGP_C3HHeJ_T0087550.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 450803 453159 + Mcoln1 protein_coding retained_intron MGP_C3HHeJ_T0087551.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 451732 452944 + Mcoln1 protein_coding retained_intron MGP_C3HHeJ_T0087552.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 452818 455361 + Mcoln1 protein_coding retained_intron MGP_C3HHeJ_T0087553.1 MGP_C3HHeJ_G0033002.1 mouse_genomes_project 8 454698 455369 + Mcoln1 protein_coding retained_intron MGP_C3HHeJ_T0089170.1 MGP_C3HHeJ_G0033522.1 mouse_genomes_project 8 84206322 84218455 + MGP_C3HHeJ_P0089170 Gipc1 protein_coding protein_coding MGP_C3HHeJ_T0010899.1 MGP_C3HHeJ_G0009032.1 mouse_genomes_project 8 84779241 84779324 - Mir3074-2 miRNA miRNA MGP_C3HHeJ_T0088123.1 MGP_C3HHeJ_G0033193.1 mouse_genomes_project 8 25385529 25421479 - MGP_C3HHeJ_P0088123 Rab11fip1 protein_coding protein_coding MGP_C3HHeJ_T0088124.1 MGP_C3HHeJ_G0033193.1 mouse_genomes_project 8 25385529 25421479 - MGP_C3HHeJ_P0088124 Rab11fip1 protein_coding protein_coding MGP_C3HHeJ_T0088371.1 MGP_C3HHeJ_G0033275.1 mouse_genomes_project 8 45451668 45454290 - MGP_C3HHeJ_P0088371 Helt protein_coding protein_coding MGP_C3HHeJ_T0089419.1 MGP_C3HHeJ_G0033588.1 mouse_genomes_project 8 86031208 86056280 - MGP_C3HHeJ_P0089419 4921524J17Rik protein_coding protein_coding MGP_C3HHeJ_T0015758.1 MGP_C3HHeJ_G0013862.1 mouse_genomes_project 8 21195505 21195760 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089438.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87114641 87213196 - MGP_C3HHeJ_P0089438 Abcc12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089439.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87136959 87213227 - MGP_C3HHeJ_P0089439 Abcc12 protein_coding protein_coding MGP_C3HHeJ_T0089440.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87136963 87167084 - MGP_C3HHeJ_P0089440 Abcc12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089441.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87137221 87200437 - MGP_C3HHeJ_P0089441 Abcc12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089442.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87137221 87200437 - MGP_C3HHeJ_P0089442 Abcc12 protein_coding protein_coding MGP_C3HHeJ_T0089443.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87137221 87200437 - MGP_C3HHeJ_P0089443 Abcc12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089444.1 MGP_C3HHeJ_G0033594.1 mouse_genomes_project 8 87166297 87213227 - MGP_C3HHeJ_P0089444 Abcc12 protein_coding protein_coding MGP_C3HHeJ_T0087896.1 MGP_C3HHeJ_G0033107.1 mouse_genomes_project 8 16752946 16754636 + MGP_C3HHeJ_P0087896 Spag11a protein_coding protein_coding MGP_C3HHeJ_T0010889.1 MGP_C3HHeJ_G0009022.1 mouse_genomes_project 8 84489464 84489578 - Gm44450 miRNA miRNA MGP_C3HHeJ_T0088841.1 MGP_C3HHeJ_G0033409.1 mouse_genomes_project 8 70691086 70691629 - MGP_C3HHeJ_P0088841 protein_coding protein_coding MGP_C3HHeJ_T0099658.1 MGP_C3HHeJ_G0037852.1 mouse_genomes_project 8 106092267 106092374 + Gm22148 snRNA snRNA MGP_C3HHeJ_T0089841.1 MGP_C3HHeJ_G0033734.1 mouse_genomes_project 8 107236228 107241966 + MGP_C3HHeJ_P0089841 Hsd11b2 protein_coding protein_coding MGP_C3HHeJ_T0010902.1 MGP_C3HHeJ_G0009035.1 mouse_genomes_project 8 85686389 85686476 + Mir7070 miRNA miRNA MGP_C3HHeJ_T0010926.1 MGP_C3HHeJ_G0009059.1 mouse_genomes_project 8 113232342 113232424 + Gm23193 miRNA miRNA MGP_C3HHeJ_T0099624.1 MGP_C3HHeJ_G0037818.1 mouse_genomes_project 8 10724209 10724312 - Gm25014 snRNA snRNA MGP_C3HHeJ_T0102327.1 MGP_C3HHeJ_G0040290.1 mouse_genomes_project 8 17132553 17133492 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0090571.1 MGP_C3HHeJ_G0033968.1 mouse_genomes_project 8 127607041 127625759 + MGP_C3HHeJ_P0090571 Tsnax protein_coding unknown_likely_coding MGP_C3HHeJ_T0090322.1 MGP_C3HHeJ_G0033897.1 mouse_genomes_project 8 124078051 124108377 - MGP_C3HHeJ_P0090322 Fbxo31 protein_coding protein_coding MGP_C3HHeJ_T0090323.1 MGP_C3HHeJ_G0033897.1 mouse_genomes_project 8 124082612 124088195 - Fbxo31 protein_coding processed_transcript MGP_C3HHeJ_T0090324.1 MGP_C3HHeJ_G0033897.1 mouse_genomes_project 8 124084236 124089057 - Fbxo31 protein_coding retained_intron MGP_C3HHeJ_T0090325.1 MGP_C3HHeJ_G0033897.1 mouse_genomes_project 8 124093424 124108361 - MGP_C3HHeJ_P0090325 Fbxo31 protein_coding protein_coding MGP_C3HHeJ_T0100916.1 MGP_C3HHeJ_G0039110.1 mouse_genomes_project 8 87619392 87619509 - Gm24781 snoRNA snoRNA MGP_C3HHeJ_T0100900.1 MGP_C3HHeJ_G0039094.1 mouse_genomes_project 8 62501620 62501734 + Gm22324 snoRNA snoRNA MGP_C3HHeJ_T0090505.1 MGP_C3HHeJ_G0033941.1 mouse_genomes_project 8 126056373 126084633 + MGP_C3HHeJ_P0090505 Afg3l1 protein_coding protein_coding MGP_C3HHeJ_T0090506.1 MGP_C3HHeJ_G0033941.1 mouse_genomes_project 8 126056373 126084633 + MGP_C3HHeJ_P0090506 Afg3l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090507.1 MGP_C3HHeJ_G0033941.1 mouse_genomes_project 8 126056410 126060603 + Afg3l1 protein_coding retained_intron MGP_C3HHeJ_T0090508.1 MGP_C3HHeJ_G0033941.1 mouse_genomes_project 8 126059675 126069244 + Afg3l1 protein_coding processed_transcript MGP_C3HHeJ_T0090509.1 MGP_C3HHeJ_G0033941.1 mouse_genomes_project 8 126073679 126079652 + Afg3l1 protein_coding retained_intron MGP_C3HHeJ_T0090510.1 MGP_C3HHeJ_G0033941.1 mouse_genomes_project 8 126081802 126082332 + Afg3l1 protein_coding retained_intron MGP_C3HHeJ_T0087919.1 MGP_C3HHeJ_G0033129.1 mouse_genomes_project 8 19957836 19959931 + MGP_C3HHeJ_P0087919 Defb13 protein_coding protein_coding MGP_C3HHeJ_T0009002.1 MGP_C3HHeJ_G0007232.1 mouse_genomes_project 8 30488203 30495714 + Gm26578 lincRNA lincRNA MGP_C3HHeJ_T0089378.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85684358 85691306 + MGP_C3HHeJ_P0089378 Fbxw9 protein_coding protein_coding MGP_C3HHeJ_T0089379.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85684359 85691308 + Fbxw9 protein_coding retained_intron MGP_C3HHeJ_T0089380.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85684400 85688991 + Fbxw9 protein_coding retained_intron MGP_C3HHeJ_T0089381.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85684832 85691301 + Fbxw9 protein_coding retained_intron MGP_C3HHeJ_T0089382.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85684870 85691071 + Fbxw9 protein_coding processed_transcript MGP_C3HHeJ_T0089383.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85688773 85690515 + Fbxw9 protein_coding retained_intron MGP_C3HHeJ_T0089384.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85689757 85690552 + Fbxw9 protein_coding processed_transcript MGP_C3HHeJ_T0089385.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85689811 85690554 + Fbxw9 protein_coding retained_intron MGP_C3HHeJ_T0089386.1 MGP_C3HHeJ_G0033576.1 mouse_genomes_project 8 85690252 85691088 + Fbxw9 protein_coding retained_intron MGP_C3HHeJ_T0088970.1 MGP_C3HHeJ_G0033450.1 mouse_genomes_project 8 71787300 71788663 + MGP_C3HHeJ_P0088970 Insl3 protein_coding protein_coding MGP_C3HHeJ_T0009069.1 MGP_C3HHeJ_G0007284.1 mouse_genomes_project 8 92728788 92734290 - Gm28515 lincRNA lincRNA MGP_C3HHeJ_T0089223.1 MGP_C3HHeJ_G0033535.1 mouse_genomes_project 8 84589727 84602144 - MGP_C3HHeJ_P0089223 Il27ra protein_coding protein_coding MGP_C3HHeJ_T0089889.1 MGP_C3HHeJ_G0033758.1 mouse_genomes_project 8 107726574 107733362 - MGP_C3HHeJ_P0089889 Dpep2 protein_coding protein_coding MGP_C3HHeJ_T0089890.1 MGP_C3HHeJ_G0033758.1 mouse_genomes_project 8 107726575 107738062 - MGP_C3HHeJ_P0089890 Dpep2 protein_coding protein_coding MGP_C3HHeJ_T0089891.1 MGP_C3HHeJ_G0033758.1 mouse_genomes_project 8 107726580 107733372 - MGP_C3HHeJ_P0089891 Dpep2 protein_coding protein_coding MGP_C3HHeJ_T0089892.1 MGP_C3HHeJ_G0033758.1 mouse_genomes_project 8 107729377 107733335 - Dpep2 protein_coding retained_intron MGP_C3HHeJ_T0089893.1 MGP_C3HHeJ_G0033758.1 mouse_genomes_project 8 107730129 107733363 - Dpep2 protein_coding retained_intron MGP_C3HHeJ_T0087904.1 MGP_C3HHeJ_G0033115.1 mouse_genomes_project 8 18877400 18879239 - MGP_C3HHeJ_P0087904 Gm15056 protein_coding protein_coding MGP_C3HHeJ_T0087905.1 MGP_C3HHeJ_G0033115.1 mouse_genomes_project 8 18877400 18878768 - MGP_C3HHeJ_P0087905 Gm15056 protein_coding protein_coding MGP_C3HHeJ_T0087891.1 MGP_C3HHeJ_G0033103.1 mouse_genomes_project 8 16600220 16603349 - MGP_C3HHeJ_P0087891 Defb38 protein_coding protein_coding MGP_C3HHeJ_T0090123.1 MGP_C3HHeJ_G0033835.1 mouse_genomes_project 8 114041939 114056034 + MGP_C3HHeJ_P0090123 Gabarapl2 protein_coding protein_coding MGP_C3HHeJ_T0090124.1 MGP_C3HHeJ_G0033835.1 mouse_genomes_project 8 114041994 114043008 + Gabarapl2 protein_coding retained_intron MGP_C3HHeJ_T0090125.1 MGP_C3HHeJ_G0033835.1 mouse_genomes_project 8 114042304 114055163 + Gabarapl2 protein_coding retained_intron MGP_C3HHeJ_T0088686.1 MGP_C3HHeJ_G0033370.1 mouse_genomes_project 8 69836829 69842999 - MGP_C3HHeJ_P0088686 Yjefn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088687.1 MGP_C3HHeJ_G0033370.1 mouse_genomes_project 8 69836836 69851488 - MGP_C3HHeJ_P0088687 Yjefn3 protein_coding protein_coding MGP_C3HHeJ_T0088688.1 MGP_C3HHeJ_G0033370.1 mouse_genomes_project 8 69836836 69840005 - MGP_C3HHeJ_P0088688 Yjefn3 protein_coding protein_coding MGP_C3HHeJ_T0088689.1 MGP_C3HHeJ_G0033370.1 mouse_genomes_project 8 69836838 69837224 - Yjefn3 protein_coding processed_transcript MGP_C3HHeJ_T0088263.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39841691 39998830 - MGP_C3HHeJ_P0088263 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088264.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39841695 39906970 - MGP_C3HHeJ_P0088264 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088265.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39841695 39979159 - MGP_C3HHeJ_P0088265 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088266.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39841829 39892584 - MGP_C3HHeJ_P0088266 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088267.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39849520 39850956 - Mtus1 protein_coding retained_intron MGP_C3HHeJ_T0088268.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39851426 39867531 - Mtus1 protein_coding processed_transcript MGP_C3HHeJ_T0088269.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39851583 39867545 - MGP_C3HHeJ_P0088269 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088270.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39853102 39867096 - MGP_C3HHeJ_P0088270 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088271.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39865116 39890334 - Mtus1 protein_coding processed_transcript MGP_C3HHeJ_T0088272.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39869740 39906959 - Mtus1 protein_coding processed_transcript MGP_C3HHeJ_T0088273.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39870301 39873635 - Mtus1 protein_coding retained_intron MGP_C3HHeJ_T0088274.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39902218 39944913 - MGP_C3HHeJ_P0088274 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088275.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39902333 39998830 - MGP_C3HHeJ_P0088275 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0088276.1 MGP_C3HHeJ_G0033247.1 mouse_genomes_project 8 39946699 39998822 - MGP_C3HHeJ_P0088276 Mtus1 protein_coding protein_coding MGP_C3HHeJ_T0010923.1 MGP_C3HHeJ_G0009056.1 mouse_genomes_project 8 112543184 112543281 - Gm44489 miRNA miRNA MGP_C3HHeJ_T0009021.1 MGP_C3HHeJ_G0007248.1 mouse_genomes_project 8 60625863 60628335 + B230317F23Rik lincRNA lincRNA MGP_C3HHeJ_T0089561.1 MGP_C3HHeJ_G0033632.1 mouse_genomes_project 8 94226634 94239003 - MGP_C3HHeJ_P0089561 Ces1h protein_coding protein_coding MGP_C3HHeJ_T0090277.1 MGP_C3HHeJ_G0033887.1 mouse_genomes_project 8 123086252 123113757 - MGP_C3HHeJ_P0090277 1190005I06Rik protein_coding protein_coding MGP_C3HHeJ_T0090279.1 MGP_C3HHeJ_G0033887.1 mouse_genomes_project 8 123086451 123128923 - MGP_C3HHeJ_P0090279 1190005I06Rik protein_coding protein_coding MGP_C3HHeJ_T0090280.1 MGP_C3HHeJ_G0033887.1 mouse_genomes_project 8 123086585 123113628 - MGP_C3HHeJ_P0090280 1190005I06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100877.1 MGP_C3HHeJ_G0039071.1 mouse_genomes_project 8 15815980 15816090 - Gm25665 snoRNA snoRNA MGP_C3HHeJ_T0010900.1 MGP_C3HHeJ_G0009033.1 mouse_genomes_project 8 85477150 85477212 + Mir7069 miRNA miRNA MGP_C3HHeJ_T0005331.1 MGP_C3HHeJ_G0004511.1 mouse_genomes_project 8 125261928 125264236 + Gm10612 antisense antisense MGP_C3HHeJ_T0090152.1 MGP_C3HHeJ_G0033845.1 mouse_genomes_project 8 116590618 116598773 + MGP_C3HHeJ_P0090152 Clec3a protein_coding protein_coding MGP_C3HHeJ_T0090447.1 MGP_C3HHeJ_G0033927.1 mouse_genomes_project 8 125724379 125739625 - MGP_C3HHeJ_P0090447 Sult5a1 protein_coding protein_coding MGP_C3HHeJ_T0090448.1 MGP_C3HHeJ_G0033927.1 mouse_genomes_project 8 125724381 125739625 - MGP_C3HHeJ_P0090448 Sult5a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090449.1 MGP_C3HHeJ_G0033927.1 mouse_genomes_project 8 125726989 125739612 - MGP_C3HHeJ_P0090449 Sult5a1 protein_coding protein_coding MGP_C3HHeJ_T0090450.1 MGP_C3HHeJ_G0033927.1 mouse_genomes_project 8 125729645 125739583 - MGP_C3HHeJ_P0090450 Sult5a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090451.1 MGP_C3HHeJ_G0033927.1 mouse_genomes_project 8 125738351 125739629 - Sult5a1 protein_coding retained_intron MGP_C3HHeJ_T0090452.1 MGP_C3HHeJ_G0033927.1 mouse_genomes_project 8 125738619 125739670 - Sult5a1 protein_coding retained_intron MGP_C3HHeJ_T0087900.1 MGP_C3HHeJ_G0033111.1 mouse_genomes_project 8 16830779 16832977 + MGP_C3HHeJ_P0087900 Defb46 protein_coding protein_coding MGP_C3HHeJ_T0100892.1 MGP_C3HHeJ_G0039086.1 mouse_genomes_project 8 44701177 44701314 - Gm23604 snoRNA snoRNA MGP_C3HHeJ_T0089722.1 MGP_C3HHeJ_G0033687.1 mouse_genomes_project 8 105711971 105765192 + MGP_C3HHeJ_P0089722 Bean1 protein_coding protein_coding MGP_C3HHeJ_T0089723.1 MGP_C3HHeJ_G0033687.1 mouse_genomes_project 8 105711971 105765192 + MGP_C3HHeJ_P0089723 Bean1 protein_coding protein_coding MGP_C3HHeJ_T0089724.1 MGP_C3HHeJ_G0033687.1 mouse_genomes_project 8 105711971 105765192 + MGP_C3HHeJ_P0089724 Bean1 protein_coding protein_coding MGP_C3HHeJ_T0089725.1 MGP_C3HHeJ_G0033687.1 mouse_genomes_project 8 105711971 105765192 + MGP_C3HHeJ_P0089725 Bean1 protein_coding protein_coding MGP_C3HHeJ_T0088782.1 MGP_C3HHeJ_G0033393.1 mouse_genomes_project 8 70350265 70410440 - Crtc1 protein_coding retained_intron MGP_C3HHeJ_T0088783.1 MGP_C3HHeJ_G0033393.1 mouse_genomes_project 8 70350265 70410440 - MGP_C3HHeJ_P0088783 Crtc1 protein_coding protein_coding MGP_C3HHeJ_T0088784.1 MGP_C3HHeJ_G0033393.1 mouse_genomes_project 8 70365762 70370900 - Crtc1 protein_coding retained_intron MGP_C3HHeJ_T0088785.1 MGP_C3HHeJ_G0033393.1 mouse_genomes_project 8 70372940 70410436 - Crtc1 protein_coding retained_intron MGP_C3HHeJ_T0088786.1 MGP_C3HHeJ_G0033393.1 mouse_genomes_project 8 70374217 70402233 - Crtc1 protein_coding processed_transcript MGP_C3HHeJ_T0018240.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56901652 56917680 - AV026068 processed_transcript retained_intron MGP_C3HHeJ_T0018241.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56901652 56918011 - AV026068 processed_transcript lincRNA MGP_C3HHeJ_T0018242.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56901652 56917601 - AV026068 processed_transcript lincRNA MGP_C3HHeJ_T0018243.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56901652 56918135 - AV026068 processed_transcript lincRNA MGP_C3HHeJ_T0018244.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56901658 56902746 - AV026068 processed_transcript lincRNA MGP_C3HHeJ_T0018245.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56902630 56918106 - AV026068 processed_transcript retained_intron MGP_C3HHeJ_T0018246.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56904327 56918043 - AV026068 processed_transcript retained_intron MGP_C3HHeJ_T0018247.1 MGP_C3HHeJ_G0015476.1 mouse_genomes_project 8 56911573 56918024 - AV026068 processed_transcript retained_intron MGP_C3HHeJ_T0009086.1 MGP_C3HHeJ_G0007293.1 mouse_genomes_project 8 106864319 106870029 + Gm3830 lincRNA lincRNA MGP_C3HHeJ_T0090318.1 MGP_C3HHeJ_G0033896.1 mouse_genomes_project 8 124059451 124070390 - MGP_C3HHeJ_P0090318 1700018B08Rik protein_coding protein_coding MGP_C3HHeJ_T0090319.1 MGP_C3HHeJ_G0033896.1 mouse_genomes_project 8 124059499 124070305 - MGP_C3HHeJ_P0090319 1700018B08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090320.1 MGP_C3HHeJ_G0033896.1 mouse_genomes_project 8 124059499 124070305 - MGP_C3HHeJ_P0090320 1700018B08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090321.1 MGP_C3HHeJ_G0033896.1 mouse_genomes_project 8 124060486 124072756 - MGP_C3HHeJ_P0090321 1700018B08Rik protein_coding protein_coding MGP_C3HHeJ_T0087720.1 MGP_C3HHeJ_G0033058.1 mouse_genomes_project 8 9985461 10017545 + MGP_C3HHeJ_P0087720 Spaca7 protein_coding protein_coding MGP_C3HHeJ_T0005321.1 MGP_C3HHeJ_G0004502.1 mouse_genomes_project 8 116820874 116823445 - Gm16117 antisense antisense MGP_C3HHeJ_T0009050.1 MGP_C3HHeJ_G0007273.1 mouse_genomes_project 8 87848122 87940792 + Gm27169 lincRNA lincRNA MGP_C3HHeJ_T0087667.1 MGP_C3HHeJ_G0033031.1 mouse_genomes_project 8 1599658 1617127 + MGP_C3HHeJ_P0087667 Zfp958 protein_coding protein_coding MGP_C3HHeJ_T0087668.1 MGP_C3HHeJ_G0033031.1 mouse_genomes_project 8 1613417 1616958 + MGP_C3HHeJ_P0087668 Zfp958 protein_coding protein_coding MGP_C3HHeJ_T0087650.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1308019 1343934 + MGP_C3HHeJ_P0087650 Ccl25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087651.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1308036 1332177 + MGP_C3HHeJ_P0087651 Ccl25 protein_coding non_stop_decay MGP_C3HHeJ_T0087652.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1308039 1332177 + MGP_C3HHeJ_P0087652 Ccl25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087653.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1308042 1343590 + MGP_C3HHeJ_P0087653 Ccl25 protein_coding protein_coding MGP_C3HHeJ_T0087654.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1308045 1337486 + MGP_C3HHeJ_P0087654 Ccl25 protein_coding protein_coding MGP_C3HHeJ_T0087655.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1308050 1316107 + Ccl25 protein_coding processed_transcript MGP_C3HHeJ_T0087656.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1332976 1343956 + MGP_C3HHeJ_P0087656 Ccl25 protein_coding protein_coding MGP_C3HHeJ_T0087657.1 MGP_C3HHeJ_G0033029.1 mouse_genomes_project 8 1332976 1341923 + MGP_C3HHeJ_P0087657 Ccl25 protein_coding protein_coding MGP_C3HHeJ_T0090603.1 MGP_C3HHeJ_G0033980.1 mouse_genomes_project 8 129617316 129632746 - MGP_C3HHeJ_P0090603 Tomm20 protein_coding protein_coding MGP_C3HHeJ_T0018232.1 MGP_C3HHeJ_G0015473.1 mouse_genomes_project 8 44143979 44148356 - AY512931 processed_transcript processed_transcript MGP_C3HHeJ_T0087993.1 MGP_C3HHeJ_G0033157.1 mouse_genomes_project 8 21720189 21988298 + MGP_C3HHeJ_P0087993 Zmat4 protein_coding protein_coding MGP_C3HHeJ_T0087994.1 MGP_C3HHeJ_G0033157.1 mouse_genomes_project 8 21757425 22253956 + MGP_C3HHeJ_P0087994 Zmat4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087995.1 MGP_C3HHeJ_G0033157.1 mouse_genomes_project 8 21757425 22157218 + MGP_C3HHeJ_P0087995 Zmat4 protein_coding protein_coding MGP_C3HHeJ_T0087996.1 MGP_C3HHeJ_G0033157.1 mouse_genomes_project 8 21790342 21893682 + MGP_C3HHeJ_P0087996 Zmat4 protein_coding protein_coding MGP_C3HHeJ_T0087997.1 MGP_C3HHeJ_G0033157.1 mouse_genomes_project 8 22014963 22109031 + Zmat4 protein_coding retained_intron MGP_C3HHeJ_T0089371.1 MGP_C3HHeJ_G0033571.1 mouse_genomes_project 8 85608951 85621609 + MGP_C3HHeJ_P0089371 Hook2 protein_coding protein_coding MGP_C3HHeJ_T0088359.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45186330 45306397 - MGP_C3HHeJ_P0088359 Snx25 protein_coding protein_coding MGP_C3HHeJ_T0088360.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45186345 45271284 - Snx25 protein_coding retained_intron MGP_C3HHeJ_T0088361.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45186526 45232884 - MGP_C3HHeJ_P0088361 Snx25 protein_coding protein_coding MGP_C3HHeJ_T0088362.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45202477 45209526 - Snx25 protein_coding processed_transcript MGP_C3HHeJ_T0088363.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45209149 45278685 - MGP_C3HHeJ_P0088363 Snx25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088364.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45209193 45242334 - Snx25 protein_coding processed_transcript MGP_C3HHeJ_T0088365.1 MGP_C3HHeJ_G0033272.1 mouse_genomes_project 8 45232441 45258969 - Snx25 protein_coding retained_intron MGP_C3HHeJ_T0015813.1 MGP_C3HHeJ_G0013917.1 mouse_genomes_project 8 126384699 126385066 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090385.1 MGP_C3HHeJ_G0033911.1 mouse_genomes_project 8 124995697 125002201 - MGP_C3HHeJ_P0090385 Snai3 protein_coding protein_coding MGP_C3HHeJ_T0089560.1 MGP_C3HHeJ_G0033631.1 mouse_genomes_project 8 94177470 94215139 - MGP_C3HHeJ_P0089560 Ces1g protein_coding protein_coding MGP_C3HHeJ_T0087844.1 MGP_C3HHeJ_G0033091.1 mouse_genomes_project 8 12395148 12410038 + MGP_C3HHeJ_P0087844 Cln8 protein_coding protein_coding MGP_C3HHeJ_T0087845.1 MGP_C3HHeJ_G0033091.1 mouse_genomes_project 8 12403364 12410381 + MGP_C3HHeJ_P0087845 Cln8 protein_coding protein_coding MGP_C3HHeJ_T0087846.1 MGP_C3HHeJ_G0033091.1 mouse_genomes_project 8 12403430 12417038 + MGP_C3HHeJ_P0087846 Cln8 protein_coding protein_coding MGP_C3HHeJ_T0087847.1 MGP_C3HHeJ_G0033091.1 mouse_genomes_project 8 12404323 12410108 + MGP_C3HHeJ_P0087847 Cln8 protein_coding protein_coding MGP_C3HHeJ_T0087848.1 MGP_C3HHeJ_G0033091.1 mouse_genomes_project 8 12404678 12410241 + MGP_C3HHeJ_P0087848 Cln8 protein_coding protein_coding MGP_C3HHeJ_T0089706.1 MGP_C3HHeJ_G0033680.1 mouse_genomes_project 8 96839053 96871822 - MGP_C3HHeJ_P0089706 Got2 protein_coding protein_coding MGP_C3HHeJ_T0089707.1 MGP_C3HHeJ_G0033680.1 mouse_genomes_project 8 96841979 96855385 - Got2 protein_coding processed_transcript MGP_C3HHeJ_T0009096.1 MGP_C3HHeJ_G0007300.1 mouse_genomes_project 8 112864139 112951035 - Gm26816 lincRNA lincRNA MGP_C3HHeJ_T0088145.1 MGP_C3HHeJ_G0033206.1 mouse_genomes_project 8 29639756 29690120 + MGP_C3HHeJ_P0088145 Fut10 protein_coding protein_coding MGP_C3HHeJ_T0088146.1 MGP_C3HHeJ_G0033206.1 mouse_genomes_project 8 29639769 29713125 + MGP_C3HHeJ_P0088146 Fut10 protein_coding protein_coding MGP_C3HHeJ_T0088147.1 MGP_C3HHeJ_G0033206.1 mouse_genomes_project 8 29653867 29688353 + Fut10 protein_coding processed_transcript MGP_C3HHeJ_T0010928.1 MGP_C3HHeJ_G0009061.1 mouse_genomes_project 8 113780386 113780460 - Mir7076 miRNA miRNA MGP_C3HHeJ_T0090301.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123603845 123621244 - MGP_C3HHeJ_P0090301 Mthfsd protein_coding protein_coding MGP_C3HHeJ_T0090302.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123607229 123613403 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090303.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123609770 123621253 - MGP_C3HHeJ_P0090303 Mthfsd protein_coding protein_coding MGP_C3HHeJ_T0090304.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123609772 123621221 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090305.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123609774 123621236 - MGP_C3HHeJ_P0090305 Mthfsd protein_coding protein_coding MGP_C3HHeJ_T0090306.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123609984 123613811 - Mthfsd protein_coding retained_intron MGP_C3HHeJ_T0090307.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123610068 123621318 - MGP_C3HHeJ_P0090307 Mthfsd protein_coding protein_coding MGP_C3HHeJ_T0090308.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123610154 123621305 - Mthfsd protein_coding retained_intron MGP_C3HHeJ_T0090309.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123610925 123621214 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090310.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123611225 123618558 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090311.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123613393 123621224 - MGP_C3HHeJ_P0090311 Mthfsd protein_coding protein_coding MGP_C3HHeJ_T0090312.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123614940 123620569 - Mthfsd protein_coding retained_intron MGP_C3HHeJ_T0090313.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123616069 123618615 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090314.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123616316 123621239 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090315.1 MGP_C3HHeJ_G0033893.1 mouse_genomes_project 8 123616692 123621269 - Mthfsd protein_coding processed_transcript MGP_C3HHeJ_T0090458.1 MGP_C3HHeJ_G0033931.1 mouse_genomes_project 8 125804631 125812719 + MGP_C3HHeJ_P0090458 Cdk10 protein_coding protein_coding MGP_C3HHeJ_T0098548.1 MGP_C3HHeJ_G0036748.1 mouse_genomes_project 8 32413953 32414929 - Gm26978 sense_intronic sense_intronic MGP_C3HHeJ_T0089151.1 MGP_C3HHeJ_G0033513.1 mouse_genomes_project 8 83811534 83819571 + MGP_C3HHeJ_P0089151 Ucp1 protein_coding protein_coding MGP_C3HHeJ_T0015769.1 MGP_C3HHeJ_G0013873.1 mouse_genomes_project 8 40951394 40953044 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089867.1 MGP_C3HHeJ_G0033747.1 mouse_genomes_project 8 107581431 107588825 - MGP_C3HHeJ_P0089867 Cenpt protein_coding protein_coding MGP_C3HHeJ_T0088302.1 MGP_C3HHeJ_G0033260.1 mouse_genomes_project 8 44345608 44365918 - MGP_C3HHeJ_P0088302 F11 protein_coding protein_coding MGP_C3HHeJ_T0090016.1 MGP_C3HHeJ_G0033801.1 mouse_genomes_project 8 111923668 111933035 + MGP_C3HHeJ_P0090016 Tat protein_coding protein_coding MGP_C3HHeJ_T0090017.1 MGP_C3HHeJ_G0033801.1 mouse_genomes_project 8 111923737 111927926 + MGP_C3HHeJ_P0090017 Tat protein_coding protein_coding MGP_C3HHeJ_T0089182.1 MGP_C3HHeJ_G0033525.1 mouse_genomes_project 8 84269248 84277406 + MGP_C3HHeJ_P0089182 Ddx39 protein_coding protein_coding MGP_C3HHeJ_T0089183.1 MGP_C3HHeJ_G0033525.1 mouse_genomes_project 8 84269339 84277332 + Ddx39 protein_coding retained_intron MGP_C3HHeJ_T0089184.1 MGP_C3HHeJ_G0033525.1 mouse_genomes_project 8 84269339 84277333 + MGP_C3HHeJ_P0089184 Ddx39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089185.1 MGP_C3HHeJ_G0033525.1 mouse_genomes_project 8 84269343 84280972 + MGP_C3HHeJ_P0089185 Ddx39 protein_coding protein_coding MGP_C3HHeJ_T0089186.1 MGP_C3HHeJ_G0033525.1 mouse_genomes_project 8 84269619 84277406 + MGP_C3HHeJ_P0089186 Ddx39 protein_coding protein_coding MGP_C3HHeJ_T0089187.1 MGP_C3HHeJ_G0033525.1 mouse_genomes_project 8 84273670 84275348 + Ddx39 protein_coding retained_intron MGP_C3HHeJ_T0005319.1 MGP_C3HHeJ_G0004500.1 mouse_genomes_project 8 116513992 116526869 - 4933408N05Rik antisense antisense MGP_C3HHeJ_T0005327.1 MGP_C3HHeJ_G0004508.1 mouse_genomes_project 8 124353676 124354610 + Gm20406 antisense antisense MGP_C3HHeJ_T0009042.1 MGP_C3HHeJ_G0007266.1 mouse_genomes_project 8 85256636 85260950 + Gm26664 lincRNA lincRNA MGP_C3HHeJ_T0090326.1 MGP_C3HHeJ_G0033898.1 mouse_genomes_project 8 124122666 124130927 + MGP_C3HHeJ_P0090326 Map1lc3b protein_coding protein_coding MGP_C3HHeJ_T0090327.1 MGP_C3HHeJ_G0033898.1 mouse_genomes_project 8 124122782 124125415 + Map1lc3b protein_coding retained_intron MGP_C3HHeJ_T0005334.1 MGP_C3HHeJ_G0004514.1 mouse_genomes_project 8 126869893 126877620 - Gm15775 antisense antisense MGP_C3HHeJ_T0089799.1 MGP_C3HHeJ_G0033718.1 mouse_genomes_project 8 106972485 106977158 + MGP_C3HHeJ_P0089799 Fbxl8 protein_coding protein_coding MGP_C3HHeJ_T0089800.1 MGP_C3HHeJ_G0033718.1 mouse_genomes_project 8 106972519 106977002 + MGP_C3HHeJ_P0089800 Fbxl8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0005326.1 MGP_C3HHeJ_G0004507.1 mouse_genomes_project 8 124070557 124071917 + Gm27045 antisense antisense MGP_C3HHeJ_T0089006.1 MGP_C3HHeJ_G0033458.1 mouse_genomes_project 8 72365334 72375078 + Tpm4 protein_coding processed_transcript MGP_C3HHeJ_T0089007.1 MGP_C3HHeJ_G0033458.1 mouse_genomes_project 8 72365618 72383097 + MGP_C3HHeJ_P0089007 Tpm4 protein_coding protein_coding MGP_C3HHeJ_T0015747.1 MGP_C3HHeJ_G0013851.1 mouse_genomes_project 8 12617007 12618030 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089861.1 MGP_C3HHeJ_G0033743.1 mouse_genomes_project 8 107436904 107438858 + MGP_C3HHeJ_P0089861 4933405L10Rik protein_coding protein_coding MGP_C3HHeJ_T0088840.1 MGP_C3HHeJ_G0033408.1 mouse_genomes_project 8 70689289 70692193 + MGP_C3HHeJ_P0088840 Jund protein_coding protein_coding MGP_C3HHeJ_T0089879.1 MGP_C3HHeJ_G0033752.1 mouse_genomes_project 8 107638350 107672347 + MGP_C3HHeJ_P0089879 Pskh1 protein_coding protein_coding MGP_C3HHeJ_T0090025.1 MGP_C3HHeJ_G0033808.1 mouse_genomes_project 8 112232142 112600211 + MGP_C3HHeJ_P0090025 Hydin protein_coding protein_coding MGP_C3HHeJ_T0090026.1 MGP_C3HHeJ_G0033808.1 mouse_genomes_project 8 112232148 112600015 + MGP_C3HHeJ_P0090026 Hydin protein_coding unknown_likely_coding MGP_C3HHeJ_T0087907.1 MGP_C3HHeJ_G0033117.1 mouse_genomes_project 8 19657302 19658978 - MGP_C3HHeJ_P0087907 protein_coding protein_coding MGP_C3HHeJ_T0090492.1 MGP_C3HHeJ_G0033936.1 mouse_genomes_project 8 125922920 125961253 + MGP_C3HHeJ_P0090492 Spire2 protein_coding protein_coding MGP_C3HHeJ_T0009098.1 MGP_C3HHeJ_G0007302.1 mouse_genomes_project 8 122647846 122674579 - A330074K22Rik lincRNA lincRNA MGP_C3HHeJ_T0089922.1 MGP_C3HHeJ_G0033768.1 mouse_genomes_project 8 108179731 108190284 + MGP_C3HHeJ_P0089922 Zfp90 protein_coding protein_coding MGP_C3HHeJ_T0088496.1 MGP_C3HHeJ_G0033315.1 mouse_genomes_project 8 58549445 58551992 + MGP_C3HHeJ_P0088496 BC030500 protein_coding protein_coding MGP_C3HHeJ_T0088497.1 MGP_C3HHeJ_G0033315.1 mouse_genomes_project 8 58549947 58550887 + MGP_C3HHeJ_P0088497 BC030500 protein_coding protein_coding MGP_C3HHeJ_T0005318.1 MGP_C3HHeJ_G0004499.1 mouse_genomes_project 8 114679269 114695249 - Gm26994 antisense antisense MGP_C3HHeJ_T0011625.1 MGP_C3HHeJ_G0009758.1 mouse_genomes_project 8 65165149 65165292 + Gm25403 misc_RNA misc_RNA MGP_C3HHeJ_T0088865.1 MGP_C3HHeJ_G0033420.1 mouse_genomes_project 8 70873144 70875444 + MGP_C3HHeJ_P0088865 protein_coding protein_coding MGP_C3HHeJ_T0015785.1 MGP_C3HHeJ_G0013889.1 mouse_genomes_project 8 79967846 79968821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0089770.1 MGP_C3HHeJ_G0033708.1 mouse_genomes_project 8 106621232 106630023 + MGP_C3HHeJ_P0089770 Ces2f protein_coding protein_coding MGP_C3HHeJ_T0089162.1 MGP_C3HHeJ_G0033517.1 mouse_genomes_project 8 83977474 83987592 - MGP_C3HHeJ_P0089162 Scoc protein_coding protein_coding MGP_C3HHeJ_T0010917.1 MGP_C3HHeJ_G0009050.1 mouse_genomes_project 8 107339853 107339961 + Mir1966 miRNA miRNA MGP_C3HHeJ_T0100931.1 MGP_C3HHeJ_G0039125.1 mouse_genomes_project 8 120492552 120492682 + Gm25200 snoRNA snoRNA MGP_C3HHeJ_T0087593.1 MGP_C3HHeJ_G0033013.1 mouse_genomes_project 8 641278 655920 - MGP_C3HHeJ_P0087593 Fcer2a protein_coding protein_coding MGP_C3HHeJ_T0011628.1 MGP_C3HHeJ_G0009761.1 mouse_genomes_project 8 88293077 88293434 + Gm24841 misc_RNA misc_RNA MGP_C3HHeJ_T0089951.1 MGP_C3HHeJ_G0033781.1 mouse_genomes_project 8 108875501 108879666 - MGP_C3HHeJ_P0089951 Tmed6 protein_coding protein_coding MGP_C3HHeJ_T0087936.1 MGP_C3HHeJ_G0033137.1 mouse_genomes_project 8 20215382 20243971 + MGP_C3HHeJ_P0087936 Vps36 protein_coding protein_coding MGP_C3HHeJ_T0087937.1 MGP_C3HHeJ_G0033137.1 mouse_genomes_project 8 20215415 20228914 + Vps36 protein_coding processed_transcript MGP_C3HHeJ_T0087938.1 MGP_C3HHeJ_G0033137.1 mouse_genomes_project 8 20240120 20241760 + Vps36 protein_coding retained_intron MGP_C3HHeJ_T0087691.1 MGP_C3HHeJ_G0033047.1 mouse_genomes_project 8 8784991 8811850 - MGP_C3HHeJ_P0087691 Rab20 protein_coding protein_coding MGP_C3HHeJ_T0088743.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70196095 70228177 + MGP_C3HHeJ_P0088743 Sugp2 protein_coding protein_coding MGP_C3HHeJ_T0088744.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70196158 70205590 + MGP_C3HHeJ_P0088744 Sugp2 protein_coding protein_coding MGP_C3HHeJ_T0088745.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70196164 70217572 + Sugp2 protein_coding retained_intron MGP_C3HHeJ_T0088746.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70197913 70205842 + MGP_C3HHeJ_P0088746 Sugp2 protein_coding protein_coding MGP_C3HHeJ_T0088747.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70206522 70221079 + Sugp2 protein_coding retained_intron MGP_C3HHeJ_T0088748.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70210947 70214673 + Sugp2 protein_coding retained_intron MGP_C3HHeJ_T0088749.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70214868 70244609 + Sugp2 protein_coding processed_transcript MGP_C3HHeJ_T0088750.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70220284 70222211 + Sugp2 protein_coding retained_intron MGP_C3HHeJ_T0088751.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70222556 70225910 + Sugp2 protein_coding processed_transcript MGP_C3HHeJ_T0088752.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70223246 70225910 + Sugp2 protein_coding retained_intron MGP_C3HHeJ_T0088753.1 MGP_C3HHeJ_G0033386.1 mouse_genomes_project 8 70237165 70244608 + Sugp2 protein_coding processed_transcript MGP_C3HHeJ_T0009041.1 MGP_C3HHeJ_G0007265.1 mouse_genomes_project 8 84779336 84780023 + Gm26532 lincRNA lincRNA MGP_C3HHeJ_T0018265.1 MGP_C3HHeJ_G0015485.1 mouse_genomes_project 8 107891514 107894215 + 1810019D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018266.1 MGP_C3HHeJ_G0015485.1 mouse_genomes_project 8 107891549 107894006 + 1810019D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018267.1 MGP_C3HHeJ_G0015485.1 mouse_genomes_project 8 107893179 107894640 + 1810019D21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0088916.1 MGP_C3HHeJ_G0033435.1 mouse_genomes_project 8 71547440 71548264 + MGP_C3HHeJ_P0088916 Mrpl34 protein_coding protein_coding MGP_C3HHeJ_T0089771.1 MGP_C3HHeJ_G0033709.1 mouse_genomes_project 8 106635767 106651593 + MGP_C3HHeJ_P0089771 Ces2g protein_coding protein_coding MGP_C3HHeJ_T0010937.1 MGP_C3HHeJ_G0009070.1 mouse_genomes_project 8 125684809 125684874 + Mir7079 miRNA miRNA MGP_C3HHeJ_T0018252.1 MGP_C3HHeJ_G0015479.1 mouse_genomes_project 8 77940423 78010827 + processed_transcript processed_transcript MGP_C3HHeJ_T0018253.1 MGP_C3HHeJ_G0015479.1 mouse_genomes_project 8 77982187 78103419 + processed_transcript processed_transcript MGP_C3HHeJ_T0018254.1 MGP_C3HHeJ_G0015479.1 mouse_genomes_project 8 78098814 78102650 + processed_transcript processed_transcript MGP_C3HHeJ_T0010905.1 MGP_C3HHeJ_G0009038.1 mouse_genomes_project 8 87220270 87220392 + Gm44348 miRNA miRNA MGP_C3HHeJ_T0088779.1 MGP_C3HHeJ_G0033391.1 mouse_genomes_project 8 70298104 70320565 - MGP_C3HHeJ_P0088779 Upf1 protein_coding protein_coding MGP_C3HHeJ_T0088780.1 MGP_C3HHeJ_G0033391.1 mouse_genomes_project 8 70299011 70320307 - MGP_C3HHeJ_P0088780 Upf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0089303.1 MGP_C3HHeJ_G0033555.1 mouse_genomes_project 8 85320552 85324392 + MGP_C3HHeJ_P0089303 G430095P16Rik protein_coding protein_coding MGP_C3HHeJ_T0010918.1 MGP_C3HHeJ_G0009051.1 mouse_genomes_project 8 107692177 107692240 - Mir7074 miRNA miRNA MGP_C3HHeJ_T0087640.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1239480 1256492 - Timm44 protein_coding retained_intron MGP_C3HHeJ_T0087641.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1239480 1256520 - MGP_C3HHeJ_P0087641 Timm44 protein_coding protein_coding MGP_C3HHeJ_T0087642.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1239498 1256478 - MGP_C3HHeJ_P0087642 Timm44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0087643.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1239733 1240485 - Timm44 protein_coding retained_intron MGP_C3HHeJ_T0087644.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1239849 1246766 - Timm44 protein_coding retained_intron MGP_C3HHeJ_T0087645.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1245833 1246703 - Timm44 protein_coding retained_intron MGP_C3HHeJ_T0087646.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1246014 1247383 - Timm44 protein_coding retained_intron MGP_C3HHeJ_T0087647.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1247064 1256489 - Timm44 protein_coding processed_transcript MGP_C3HHeJ_T0087648.1 MGP_C3HHeJ_G0033027.1 mouse_genomes_project 8 1247122 1256480 - Timm44 protein_coding retained_intron MGP_C3HHeJ_T0090028.1 MGP_C3HHeJ_G0033810.1 mouse_genomes_project 8 112713302 112735578 + MGP_C3HHeJ_P0090028 Mtss1l protein_coding protein_coding MGP_C3HHeJ_T0090029.1 MGP_C3HHeJ_G0033810.1 mouse_genomes_project 8 112713548 112733255 + MGP_C3HHeJ_P0090029 Mtss1l protein_coding protein_coding MGP_C3HHeJ_T0090030.1 MGP_C3HHeJ_G0033810.1 mouse_genomes_project 8 112720234 112726188 + Mtss1l protein_coding processed_transcript MGP_C3HHeJ_T0090031.1 MGP_C3HHeJ_G0033810.1 mouse_genomes_project 8 112721163 112731831 + MGP_C3HHeJ_P0090031 Mtss1l protein_coding protein_coding MGP_C3HHeJ_T0090032.1 MGP_C3HHeJ_G0033810.1 mouse_genomes_project 8 112721174 112732251 + MGP_C3HHeJ_P0090032 Mtss1l protein_coding protein_coding MGP_C3HHeJ_T0090033.1 MGP_C3HHeJ_G0033810.1 mouse_genomes_project 8 112731294 112732559 + Mtss1l protein_coding retained_intron MGP_C3HHeJ_T0089387.1 MGP_C3HHeJ_G0033577.1 mouse_genomes_project 8 85691751 85692166 - MGP_C3HHeJ_P0089387 Gm5741 protein_coding protein_coding MGP_C3HHeJ_T0009076.1 MGP_C3HHeJ_G0007287.1 mouse_genomes_project 8 93172229 93175675 - Gm21817 lincRNA lincRNA MGP_C3HHeJ_T0099648.1 MGP_C3HHeJ_G0037842.1 mouse_genomes_project 8 78141117 78141223 + Gm23981 snRNA snRNA MGP_C3HHeJ_T0015761.1 MGP_C3HHeJ_G0013865.1 mouse_genomes_project 8 32854307 32854694 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090421.1 MGP_C3HHeJ_G0033922.1 mouse_genomes_project 8 125417687 125436854 + MGP_C3HHeJ_P0090421 Cdh15 protein_coding protein_coding MGP_C3HHeJ_T0089094.1 MGP_C3HHeJ_G0033491.1 mouse_genomes_project 8 78862591 78867761 - MGP_C3HHeJ_P0089094 protein_coding protein_coding MGP_C3HHeJ_T0010862.1 MGP_C3HHeJ_G0008995.1 mouse_genomes_project 8 11354531 11354625 + miRNA miRNA MGP_C3HHeJ_T0087906.1 MGP_C3HHeJ_G0033116.1 mouse_genomes_project 8 18894790 18899634 - MGP_C3HHeJ_P0087906 Gm6040 protein_coding protein_coding MGP_C3HHeJ_T0099643.1 MGP_C3HHeJ_G0037837.1 mouse_genomes_project 8 67065482 67065606 - Gm24274 snRNA snRNA MGP_C3HHeJ_T0089008.1 MGP_C3HHeJ_G0033459.1 mouse_genomes_project 8 72395122 72419686 + MGP_C3HHeJ_P0089008 Rab8a protein_coding protein_coding MGP_C3HHeJ_T0089009.1 MGP_C3HHeJ_G0033459.1 mouse_genomes_project 8 72395235 72411638 + Rab8a protein_coding processed_transcript MGP_C3HHeJ_T0089010.1 MGP_C3HHeJ_G0033459.1 mouse_genomes_project 8 72395281 72411832 + Rab8a protein_coding retained_intron MGP_C3HHeJ_T0097938.1 MGP_C3HHeJ_G0036150.1 mouse_genomes_project 8 119056290 119057626 - pseudogene pseudogene MGP_C3HHeJ_T0005333.1 MGP_C3HHeJ_G0004513.1 mouse_genomes_project 8 126850242 126851618 - 1810008B01Rik antisense antisense MGP_C3HHeJ_T0002304.1 MGP_C3HHeJ_G0002223.1 mouse_genomes_project 8 123169983 123170850 + TEC TEC MGP_C3HHeJ_T0011611.1 MGP_C3HHeJ_G0009744.1 mouse_genomes_project 8 571954 572281 + Gm22204 misc_RNA misc_RNA MGP_C3HHeJ_T0099665.1 MGP_C3HHeJ_G0037859.1 mouse_genomes_project 8 117840192 117840296 - Gm23677 snRNA snRNA MGP_C3HHeJ_T0088402.1 MGP_C3HHeJ_G0033283.1 mouse_genomes_project 8 46629395 46631626 + MGP_C3HHeJ_P0088402 protein_coding protein_coding MGP_C3HHeJ_T0090410.1 MGP_C3HHeJ_G0033917.1 mouse_genomes_project 8 125129281 125169615 - MGP_C3HHeJ_P0090410 Galns protein_coding protein_coding MGP_C3HHeJ_T0089765.1 MGP_C3HHeJ_G0033705.1 mouse_genomes_project 8 106454919 106493335 + MGP_C3HHeJ_P0089765 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010935.1 MGP_C3HHeJ_G0009068.1 mouse_genomes_project 8 124513943 124514006 + Mir7237 miRNA miRNA MGP_C3HHeJ_T0010940.1 MGP_C3HHeJ_G0009073.1 mouse_genomes_project 8 127658822 127658880 + Gm22197 miRNA miRNA MGP_C3HHeJ_T0005262.1 MGP_C3HHeJ_G0004453.1 mouse_genomes_project 8 10497125 10503789 + Gm17023 antisense antisense MGP_C3HHeJ_T0088418.1 MGP_C3HHeJ_G0033289.1 mouse_genomes_project 8 46938108 46939864 + MGP_C3HHeJ_P0088418 protein_coding protein_coding MGP_C3HHeJ_T0088171.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32307120 32461890 - MGP_C3HHeJ_P0088171 Rbpms protein_coding protein_coding MGP_C3HHeJ_T0088172.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32307128 32462155 - MGP_C3HHeJ_P0088172 Rbpms protein_coding protein_coding MGP_C3HHeJ_T0088173.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32308535 32370100 - MGP_C3HHeJ_P0088173 Rbpms protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088174.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32308544 32331244 - MGP_C3HHeJ_P0088174 Rbpms protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088175.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32308547 32331207 - MGP_C3HHeJ_P0088175 Rbpms protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0088176.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32308549 32380928 - Rbpms protein_coding processed_transcript MGP_C3HHeJ_T0088177.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32308555 32321682 - Rbpms protein_coding retained_intron MGP_C3HHeJ_T0088178.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32328349 32462154 - MGP_C3HHeJ_P0088178 Rbpms protein_coding protein_coding MGP_C3HHeJ_T0088179.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32331171 32418973 - MGP_C3HHeJ_P0088179 Rbpms protein_coding protein_coding MGP_C3HHeJ_T0088180.1 MGP_C3HHeJ_G0033217.1 mouse_genomes_project 8 32391242 32420975 - Rbpms protein_coding processed_transcript MGP_C3HHeJ_T0089518.1 MGP_C3HHeJ_G0033616.1 mouse_genomes_project 8 92018715 92117053 - MGP_C3HHeJ_P0089518 Rpgrip1l protein_coding protein_coding MGP_C3HHeJ_T0089519.1 MGP_C3HHeJ_G0033616.1 mouse_genomes_project 8 92020641 92117013 - MGP_C3HHeJ_P0089519 Rpgrip1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089520.1 MGP_C3HHeJ_G0033616.1 mouse_genomes_project 8 92021862 92117118 - MGP_C3HHeJ_P0089520 Rpgrip1l protein_coding unknown_likely_coding MGP_C3HHeJ_T0089521.1 MGP_C3HHeJ_G0033616.1 mouse_genomes_project 8 92072845 92080045 - Rpgrip1l protein_coding retained_intron MGP_C3HHeJ_T0089522.1 MGP_C3HHeJ_G0033616.1 mouse_genomes_project 8 92111825 92114870 - MGP_C3HHeJ_P0089522 Rpgrip1l protein_coding protein_coding MGP_C3HHeJ_T0009102.1 MGP_C3HHeJ_G0007306.1 mouse_genomes_project 8 123375593 123377869 + Gm26878 lincRNA lincRNA MGP_C3HHeJ_T0089833.1 MGP_C3HHeJ_G0033731.1 mouse_genomes_project 8 107129687 107161276 + Lrrc36 protein_coding processed_transcript MGP_C3HHeJ_T0089834.1 MGP_C3HHeJ_G0033731.1 mouse_genomes_project 8 107129738 107143016 + Lrrc36 protein_coding processed_transcript MGP_C3HHeJ_T0089835.1 MGP_C3HHeJ_G0033731.1 mouse_genomes_project 8 107129738 107181415 + MGP_C3HHeJ_P0089835 Lrrc36 protein_coding protein_coding MGP_C3HHeJ_T0089836.1 MGP_C3HHeJ_G0033731.1 mouse_genomes_project 8 107143752 107181413 + MGP_C3HHeJ_P0089836 Lrrc36 protein_coding protein_coding MGP_C3HHeJ_T0089022.1 MGP_C3HHeJ_G0033466.1 mouse_genomes_project 8 72660720 72683321 - MGP_C3HHeJ_P0089022 Calr3 protein_coding protein_coding MGP_C3HHeJ_T0089023.1 MGP_C3HHeJ_G0033466.1 mouse_genomes_project 8 72660727 72670358 - MGP_C3HHeJ_P0089023 Calr3 protein_coding protein_coding MGP_C3HHeJ_T0010855.1 MGP_C3HHeJ_G0008988.1 mouse_genomes_project 8 7036149 7036302 - miRNA miRNA MGP_C3HHeJ_T0089478.1 MGP_C3HHeJ_G0033604.1 mouse_genomes_project 8 88959123 89017718 + MGP_C3HHeJ_P0089478 Adcy7 protein_coding protein_coding MGP_C3HHeJ_T0089479.1 MGP_C3HHeJ_G0033604.1 mouse_genomes_project 8 88970258 89017718 + MGP_C3HHeJ_P0089479 Adcy7 protein_coding protein_coding MGP_C3HHeJ_T0089480.1 MGP_C3HHeJ_G0033604.1 mouse_genomes_project 8 88976165 89017718 + MGP_C3HHeJ_P0089480 Adcy7 protein_coding protein_coding MGP_C3HHeJ_T0089481.1 MGP_C3HHeJ_G0033604.1 mouse_genomes_project 8 88981285 89017718 + MGP_C3HHeJ_P0089481 Adcy7 protein_coding protein_coding MGP_C3HHeJ_T0089020.1 MGP_C3HHeJ_G0033464.1 mouse_genomes_project 8 72551430 72554055 + MGP_C3HHeJ_P0089020 Klf2 protein_coding protein_coding MGP_C3HHeJ_T0088928.1 MGP_C3HHeJ_G0033437.1 mouse_genomes_project 8 71558550 71569768 - MGP_C3HHeJ_P0088928 Ano8 protein_coding protein_coding MGP_C3HHeJ_T0087638.1 MGP_C3HHeJ_G0033025.1 mouse_genomes_project 8 1232851 1235969 + MGP_C3HHeJ_P0087638 Snapc2 protein_coding protein_coding MGP_C3HHeJ_T0089396.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699839 85705456 - Wdr83 protein_coding retained_intron MGP_C3HHeJ_T0089397.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699839 85705385 - Wdr83 protein_coding retained_intron MGP_C3HHeJ_T0089398.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699839 85705499 - MGP_C3HHeJ_P0089398 Wdr83 protein_coding protein_coding MGP_C3HHeJ_T0089399.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699840 85704668 - Wdr83 protein_coding retained_intron MGP_C3HHeJ_T0089400.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699841 85700912 - MGP_C3HHeJ_P0089400 Wdr83 protein_coding protein_coding MGP_C3HHeJ_T0089401.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699842 85701096 - Wdr83 protein_coding retained_intron MGP_C3HHeJ_T0089402.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85699856 85706056 - Wdr83 protein_coding retained_intron MGP_C3HHeJ_T0089403.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85700632 85705426 - MGP_C3HHeJ_P0089403 Wdr83 protein_coding protein_coding MGP_C3HHeJ_T0089404.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85700928 85705427 - MGP_C3HHeJ_P0089404 Wdr83 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0089405.1 MGP_C3HHeJ_G0033579.1 mouse_genomes_project 8 85704447 85705422 - Wdr83 protein_coding retained_intron MGP_C3HHeJ_T0088338.1 MGP_C3HHeJ_G0033267.1 mouse_genomes_project 8 45064356 45073883 + MGP_C3HHeJ_P0088338 Ccdc110 protein_coding protein_coding MGP_C3HHeJ_T0088339.1 MGP_C3HHeJ_G0033267.1 mouse_genomes_project 8 45064442 45071238 + MGP_C3HHeJ_P0088339 Ccdc110 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011616.1 MGP_C3HHeJ_G0009749.1 mouse_genomes_project 8 4733732 4733934 + Gm27545 misc_RNA misc_RNA MGP_C3HHeJ_T0018230.1 MGP_C3HHeJ_G0015472.1 mouse_genomes_project 8 40085305 40089202 + Gm16348 processed_transcript processed_transcript MGP_C3HHeJ_T0018231.1 MGP_C3HHeJ_G0015472.1 mouse_genomes_project 8 40085306 40088834 + Gm16348 processed_transcript processed_transcript MGP_C3HHeJ_T0089544.1 MGP_C3HHeJ_G0033627.1 mouse_genomes_project 8 93967130 93991601 - MGP_C3HHeJ_P0089544 Ces1c protein_coding protein_coding MGP_C3HHeJ_T0089545.1 MGP_C3HHeJ_G0033627.1 mouse_genomes_project 8 93974000 93991613 - Ces1c protein_coding retained_intron MGP_C3HHeJ_T0089546.1 MGP_C3HHeJ_G0033627.1 mouse_genomes_project 8 93977245 93985008 - MGP_C3HHeJ_P0089546 Ces1c protein_coding protein_coding MGP_C3HHeJ_T0090519.1 MGP_C3HHeJ_G0033946.1 mouse_genomes_project 8 126370046 126390400 - MGP_C3HHeJ_P0090519 Ccsap protein_coding protein_coding MGP_C3HHeJ_T0090520.1 MGP_C3HHeJ_G0033946.1 mouse_genomes_project 8 126370059 126391079 - MGP_C3HHeJ_P0090520 Ccsap protein_coding protein_coding MGP_C3HHeJ_T0089670.1 MGP_C3HHeJ_G0033667.1 mouse_genomes_project 8 96262219 96264805 + MGP_C3HHeJ_P0089670 Tepp protein_coding protein_coding MGP_C3HHeJ_T0089671.1 MGP_C3HHeJ_G0033667.1 mouse_genomes_project 8 96262239 96272231 + MGP_C3HHeJ_P0089671 Tepp protein_coding protein_coding MGP_C3HHeJ_T0089672.1 MGP_C3HHeJ_G0033667.1 mouse_genomes_project 8 96263252 96273017 + MGP_C3HHeJ_P0089672 Tepp protein_coding protein_coding MGP_C3HHeJ_T0089673.1 MGP_C3HHeJ_G0033667.1 mouse_genomes_project 8 96263256 96273017 + MGP_C3HHeJ_P0089673 Tepp protein_coding protein_coding MGP_C3HHeJ_T0089674.1 MGP_C3HHeJ_G0033667.1 mouse_genomes_project 8 96272125 96278009 + Tepp protein_coding retained_intron MGP_C3HHeJ_T0089675.1 MGP_C3HHeJ_G0033667.1 mouse_genomes_project 8 96272183 96277897 + MGP_C3HHeJ_P0089675 Tepp protein_coding protein_coding MGP_C3HHeJ_T0088831.1 MGP_C3HHeJ_G0033402.1 mouse_genomes_project 8 70576331 70579140 + MGP_C3HHeJ_P0088831 Isyna1 protein_coding protein_coding MGP_C3HHeJ_T0089236.1 MGP_C3HHeJ_G0033543.1 mouse_genomes_project 8 84715477 84730543 + MGP_C3HHeJ_P0089236 4930432K21Rik protein_coding protein_coding MGP_C3HHeJ_T0089237.1 MGP_C3HHeJ_G0033543.1 mouse_genomes_project 8 84715605 84740897 + MGP_C3HHeJ_P0089237 4930432K21Rik protein_coding protein_coding MGP_C3HHeJ_T0089238.1 MGP_C3HHeJ_G0033543.1 mouse_genomes_project 8 84715698 84740896 + MGP_C3HHeJ_P0089238 4930432K21Rik protein_coding protein_coding MGP_C3HHeJ_T0088617.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68672385 68707424 + MGP_C3HHeJ_P0088617 Ints10 protein_coding protein_coding MGP_C3HHeJ_T0088618.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68672391 68700561 + MGP_C3HHeJ_P0088618 Ints10 protein_coding protein_coding MGP_C3HHeJ_T0088619.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68672412 68677166 + Ints10 protein_coding retained_intron MGP_C3HHeJ_T0088620.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68672412 68707422 + MGP_C3HHeJ_P0088620 Ints10 protein_coding protein_coding MGP_C3HHeJ_T0088621.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68672430 68677166 + Ints10 protein_coding retained_intron MGP_C3HHeJ_T0088622.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68672471 68707422 + MGP_C3HHeJ_P0088622 Ints10 protein_coding protein_coding MGP_C3HHeJ_T0088623.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68690235 68692885 + Ints10 protein_coding retained_intron MGP_C3HHeJ_T0088624.1 MGP_C3HHeJ_G0033350.1 mouse_genomes_project 8 68698935 68705531 + MGP_C3HHeJ_P0088624 Ints10 protein_coding protein_coding MGP_C3HHeJ_T0088572.1 MGP_C3HHeJ_G0033336.1 mouse_genomes_project 8 64809007 64814589 - MGP_C3HHeJ_P0088572 protein_coding protein_coding MGP_C3HHeJ_T0088573.1 MGP_C3HHeJ_G0033336.1 mouse_genomes_project 8 64810948 64831383 - protein_coding processed_transcript MGP_C3HHeJ_T0088574.1 MGP_C3HHeJ_G0033336.1 mouse_genomes_project 8 64822739 64831459 - MGP_C3HHeJ_P0088574 protein_coding protein_coding MGP_C3HHeJ_T0088575.1 MGP_C3HHeJ_G0033336.1 mouse_genomes_project 8 64822739 64831616 - MGP_C3HHeJ_P0088575 protein_coding protein_coding MGP_C3HHeJ_T0099640.1 MGP_C3HHeJ_G0037834.1 mouse_genomes_project 8 59752347 59752451 + Gm26164 snRNA snRNA MGP_C3HHeJ_T0010896.1 MGP_C3HHeJ_G0009029.1 mouse_genomes_project 8 84778956 84779031 + Mir23a miRNA miRNA MGP_C3HHeJ_T0009109.1 MGP_C3HHeJ_G0007311.1 mouse_genomes_project 8 123938285 123944129 + Gm26747 lincRNA lincRNA MGP_C3HHeJ_T0015812.1 MGP_C3HHeJ_G0013916.1 mouse_genomes_project 8 123216284 123216965 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010941.1 MGP_C3HHeJ_G0009074.1 mouse_genomes_project 8 131018697 131018775 - Mir21c miRNA miRNA MGP_C3HHeJ_T0099647.1 MGP_C3HHeJ_G0037841.1 mouse_genomes_project 8 77890405 77890513 - Gm23468 snRNA snRNA MGP_C3HHeJ_T0018234.1 MGP_C3HHeJ_G0015475.1 mouse_genomes_project 8 48130173 48157011 + Gm19744 processed_transcript lincRNA MGP_C3HHeJ_T0018235.1 MGP_C3HHeJ_G0015475.1 mouse_genomes_project 8 48130230 48133995 + Gm19744 processed_transcript lincRNA MGP_C3HHeJ_T0018236.1 MGP_C3HHeJ_G0015475.1 mouse_genomes_project 8 48130305 48131618 + Gm19744 processed_transcript antisense MGP_C3HHeJ_T0018237.1 MGP_C3HHeJ_G0015475.1 mouse_genomes_project 8 48130549 48131023 + Gm19744 processed_transcript retained_intron MGP_C3HHeJ_T0018238.1 MGP_C3HHeJ_G0015475.1 mouse_genomes_project 8 48130611 48131117 + Gm19744 processed_transcript antisense MGP_C3HHeJ_T0018239.1 MGP_C3HHeJ_G0015475.1 mouse_genomes_project 8 48142602 48157896 + Gm19744 processed_transcript lincRNA MGP_C3HHeJ_T0087717.1 MGP_C3HHeJ_G0033055.1 mouse_genomes_project 8 9663882 9665721 + MGP_C3HHeJ_P0087717 A230072I06Rik protein_coding protein_coding MGP_C3HHeJ_T0005295.1 MGP_C3HHeJ_G0004480.1 mouse_genomes_project 8 68336911 68338445 + Gm15656 antisense antisense MGP_C3HHeJ_T0090570.1 MGP_C3HHeJ_G0033967.1 mouse_genomes_project 8 127495648 127539097 - MGP_C3HHeJ_P0090570 protein_coding unknown_likely_coding MGP_C3HHeJ_T0088096.1 MGP_C3HHeJ_G0033183.1 mouse_genomes_project 8 24162786 24178697 - MGP_C3HHeJ_P0088096 Pomk protein_coding protein_coding MGP_C3HHeJ_T0089353.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85573052 85588085 - MGP_C3HHeJ_P0089353 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089354.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85573052 85584414 - MGP_C3HHeJ_P0089354 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089355.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85574131 85584444 - MGP_C3HHeJ_P0089355 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089356.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85574131 85584467 - MGP_C3HHeJ_P0089356 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089357.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85574131 85587786 - MGP_C3HHeJ_P0089357 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089358.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85574142 85574580 - Rnaseh2a protein_coding retained_intron MGP_C3HHeJ_T0089359.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85574437 85584364 - Rnaseh2a protein_coding retained_intron MGP_C3HHeJ_T0089360.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85584009 85588112 - MGP_C3HHeJ_P0089360 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089361.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85584354 85585280 - MGP_C3HHeJ_P0089361 Rnaseh2a protein_coding protein_coding MGP_C3HHeJ_T0089362.1 MGP_C3HHeJ_G0033568.1 mouse_genomes_project 8 85584631 85587927 - Rnaseh2a protein_coding processed_transcript MGP_C3HHeJ_T0089317.1 MGP_C3HHeJ_G0033560.1 mouse_genomes_project 8 85463532 85466397 - MGP_C3HHeJ_P0089317 protein_coding protein_coding MGP_C3HHeJ_T0089923.1 MGP_C3HHeJ_G0033769.1 mouse_genomes_project 8 108277771 108284896 + MGP_C3HHeJ_P0089923 6030452D12Rik protein_coding protein_coding MGP_C3HHeJ_T0087988.1 MGP_C3HHeJ_G0033154.1 mouse_genomes_project 8 21295747 21307472 - MGP_C3HHeJ_P0087988 Gins4 protein_coding protein_coding MGP_C3HHeJ_T0090597.1 MGP_C3HHeJ_G0033974.1 mouse_genomes_project 8 128542512 128580746 + MGP_C3HHeJ_P0090597 BC021891 protein_coding protein_coding MGP_C3HHeJ_T0088551.1 MGP_C3HHeJ_G0033327.1 mouse_genomes_project 8 62669165 63083860 + MGP_C3HHeJ_P0088551 Spock3 protein_coding protein_coding MGP_C3HHeJ_T0088552.1 MGP_C3HHeJ_G0033327.1 mouse_genomes_project 8 62669388 63083868 + MGP_C3HHeJ_P0088552 Spock3 protein_coding protein_coding MGP_C3HHeJ_T0088553.1 MGP_C3HHeJ_G0033327.1 mouse_genomes_project 8 62669517 62881143 + Spock3 protein_coding retained_intron MGP_C3HHeJ_T0088554.1 MGP_C3HHeJ_G0033327.1 mouse_genomes_project 8 62669517 63084111 + MGP_C3HHeJ_P0088554 Spock3 protein_coding protein_coding MGP_C3HHeJ_T0088555.1 MGP_C3HHeJ_G0033327.1 mouse_genomes_project 8 62669956 63084102 + MGP_C3HHeJ_P0088555 Spock3 protein_coding protein_coding MGP_C3HHeJ_T0088556.1 MGP_C3HHeJ_G0033327.1 mouse_genomes_project 8 62670081 62685377 + Spock3 protein_coding processed_transcript MGP_C3HHeJ_T0098562.1 MGP_C3HHeJ_G0036761.1 mouse_genomes_project 9 109349166 109350290 + Gm37963 sense_intronic sense_intronic MGP_C3HHeJ_T0091541.1 MGP_C3HHeJ_G0034368.1 mouse_genomes_project 9 42321892 42388660 + MGP_C3HHeJ_P0091541 Nectin1 protein_coding protein_coding MGP_C3HHeJ_T0091030.1 MGP_C3HHeJ_G0034139.1 mouse_genomes_project 9 19143960 19147209 + MGP_C3HHeJ_P0091030 1810026J23Rik protein_coding protein_coding MGP_C3HHeJ_T0094533.1 MGP_C3HHeJ_G0035045.1 mouse_genomes_project 9 112139903 112146468 + MGP_C3HHeJ_P0094533 Prss50 protein_coding protein_coding MGP_C3HHeJ_T0094534.1 MGP_C3HHeJ_G0035045.1 mouse_genomes_project 9 112143198 112146467 + MGP_C3HHeJ_P0094534 Prss50 protein_coding protein_coding MGP_C3HHeJ_T0092616.1 MGP_C3HHeJ_G0034679.1 mouse_genomes_project 9 69819312 69875647 - MGP_C3HHeJ_P0092616 Fam81a protein_coding protein_coding MGP_C3HHeJ_T0092617.1 MGP_C3HHeJ_G0034679.1 mouse_genomes_project 9 69832392 69832919 - Fam81a protein_coding retained_intron MGP_C3HHeJ_T0092618.1 MGP_C3HHeJ_G0034679.1 mouse_genomes_project 9 69858939 69875872 - MGP_C3HHeJ_P0092618 Fam81a protein_coding protein_coding MGP_C3HHeJ_T0092619.1 MGP_C3HHeJ_G0034679.1 mouse_genomes_project 9 69858970 69876589 - MGP_C3HHeJ_P0092619 Fam81a protein_coding protein_coding MGP_C3HHeJ_T0002401.1 MGP_C3HHeJ_G0002319.1 mouse_genomes_project 9 102762907 102767681 - TEC TEC MGP_C3HHeJ_T0005475.1 MGP_C3HHeJ_G0004611.1 mouse_genomes_project 9 110614029 110636338 + antisense antisense MGP_C3HHeJ_T0092367.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63609868 63651449 - MGP_C3HHeJ_P0092367 Zwilch protein_coding protein_coding MGP_C3HHeJ_T0092368.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63610393 63651203 - MGP_C3HHeJ_P0092368 Zwilch protein_coding protein_coding MGP_C3HHeJ_T0092369.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63610436 63620257 - Zwilch protein_coding retained_intron MGP_C3HHeJ_T0092370.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63615942 63651239 - MGP_C3HHeJ_P0092370 Zwilch protein_coding protein_coding MGP_C3HHeJ_T0092371.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63616019 63626657 - MGP_C3HHeJ_P0092371 Zwilch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092372.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63616021 63623395 - MGP_C3HHeJ_P0092372 Zwilch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092373.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63620229 63631889 - Zwilch protein_coding retained_intron MGP_C3HHeJ_T0092374.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63623411 63632137 - Zwilch protein_coding retained_intron MGP_C3HHeJ_T0092375.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63631574 63651258 - MGP_C3HHeJ_P0092375 Zwilch protein_coding protein_coding MGP_C3HHeJ_T0092376.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63637939 63651251 - MGP_C3HHeJ_P0092376 Zwilch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092377.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63638357 63651233 - MGP_C3HHeJ_P0092377 Zwilch protein_coding protein_coding MGP_C3HHeJ_T0092378.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63639645 63651235 - MGP_C3HHeJ_P0092378 Zwilch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092379.1 MGP_C3HHeJ_G0034618.1 mouse_genomes_project 9 63645058 63651248 - Zwilch protein_coding retained_intron MGP_C3HHeJ_T0091916.1 MGP_C3HHeJ_G0034482.1 mouse_genomes_project 9 50175234 50183536 - MGP_C3HHeJ_P0091916 Gm684 protein_coding protein_coding MGP_C3HHeJ_T0093065.1 MGP_C3HHeJ_G0034777.1 mouse_genomes_project 9 86792486 86812000 - MGP_C3HHeJ_P0093065 Pgm3 protein_coding protein_coding MGP_C3HHeJ_T0093066.1 MGP_C3HHeJ_G0034777.1 mouse_genomes_project 9 86793110 86812001 - MGP_C3HHeJ_P0093066 Pgm3 protein_coding protein_coding MGP_C3HHeJ_T0093067.1 MGP_C3HHeJ_G0034777.1 mouse_genomes_project 9 86793365 86796050 - Pgm3 protein_coding retained_intron MGP_C3HHeJ_T0093068.1 MGP_C3HHeJ_G0034777.1 mouse_genomes_project 9 86793423 86811980 - MGP_C3HHeJ_P0093068 Pgm3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093069.1 MGP_C3HHeJ_G0034777.1 mouse_genomes_project 9 86793790 86811966 - Pgm3 protein_coding retained_intron MGP_C3HHeJ_T0093070.1 MGP_C3HHeJ_G0034777.1 mouse_genomes_project 9 86794632 86812015 - Pgm3 protein_coding retained_intron MGP_C3HHeJ_T0091288.1 MGP_C3HHeJ_G0034234.1 mouse_genomes_project 9 34764031 34765389 - MGP_C3HHeJ_P0091288 Gm17689 protein_coding protein_coding MGP_C3HHeJ_T0009178.1 MGP_C3HHeJ_G0007368.1 mouse_genomes_project 9 69909419 69943704 - Gm26849 lincRNA lincRNA MGP_C3HHeJ_T0002334.1 MGP_C3HHeJ_G0002253.1 mouse_genomes_project 9 72158603 72159589 + TEC TEC MGP_C3HHeJ_T0015881.1 MGP_C3HHeJ_G0013985.1 mouse_genomes_project 9 81147237 81148109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093593.1 MGP_C3HHeJ_G0034892.1 mouse_genomes_project 9 105324863 105682303 + MGP_C3HHeJ_P0093593 Cpne4 protein_coding protein_coding MGP_C3HHeJ_T0093594.1 MGP_C3HHeJ_G0034892.1 mouse_genomes_project 9 105344923 105682055 + MGP_C3HHeJ_P0093594 Cpne4 protein_coding protein_coding MGP_C3HHeJ_T0093595.1 MGP_C3HHeJ_G0034892.1 mouse_genomes_project 9 105347710 105861130 + MGP_C3HHeJ_P0093595 Cpne4 protein_coding protein_coding MGP_C3HHeJ_T0093596.1 MGP_C3HHeJ_G0034892.1 mouse_genomes_project 9 105348014 105861130 + MGP_C3HHeJ_P0093596 Cpne4 protein_coding protein_coding MGP_C3HHeJ_T0099695.1 MGP_C3HHeJ_G0037889.1 mouse_genomes_project 9 54575544 54575635 - Gm23407 snRNA snRNA MGP_C3HHeJ_T0098200.1 MGP_C3HHeJ_G0036412.1 mouse_genomes_project 9 32978997 32979127 + Gm23702 rRNA rRNA MGP_C3HHeJ_T0101013.1 MGP_C3HHeJ_G0039207.1 mouse_genomes_project 9 121928465 121928614 + Snora62 snoRNA snoRNA MGP_C3HHeJ_T0091200.1 MGP_C3HHeJ_G0034204.1 mouse_genomes_project 9 30267425 30300184 - MGP_C3HHeJ_P0091200 Kcnj5 protein_coding protein_coding MGP_C3HHeJ_T0009184.1 MGP_C3HHeJ_G0007374.1 mouse_genomes_project 9 74426161 74427838 - lincRNA lincRNA MGP_C3HHeJ_T0093298.1 MGP_C3HHeJ_G0034829.1 mouse_genomes_project 9 97036088 97131737 - MGP_C3HHeJ_P0093298 Rasa2 protein_coding protein_coding MGP_C3HHeJ_T0093299.1 MGP_C3HHeJ_G0034829.1 mouse_genomes_project 9 97039093 97041967 - Rasa2 protein_coding retained_intron MGP_C3HHeJ_T0093300.1 MGP_C3HHeJ_G0034829.1 mouse_genomes_project 9 97043069 97131656 - MGP_C3HHeJ_P0093300 Rasa2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093301.1 MGP_C3HHeJ_G0034829.1 mouse_genomes_project 9 97054610 97069872 - Rasa2 protein_coding retained_intron MGP_C3HHeJ_T0093302.1 MGP_C3HHeJ_G0034829.1 mouse_genomes_project 9 97055316 97061895 - Rasa2 protein_coding retained_intron MGP_C3HHeJ_T0093303.1 MGP_C3HHeJ_G0034829.1 mouse_genomes_project 9 97069716 97078384 - Rasa2 protein_coding retained_intron MGP_C3HHeJ_T0015857.1 MGP_C3HHeJ_G0013961.1 mouse_genomes_project 9 72236867 72238040 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000319.1 MGP_C3HHeJ_G0000269.1 mouse_genomes_project 9 125002434 125002501 - mt-Tw Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0092110.1 MGP_C3HHeJ_G0034544.1 mouse_genomes_project 9 56247477 56250736 - MGP_C3HHeJ_P0092110 Commd4 protein_coding protein_coding MGP_C3HHeJ_T0092575.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101272 69135497 + protein_coding retained_intron MGP_C3HHeJ_T0092576.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101276 69110764 + MGP_C3HHeJ_P0092576 protein_coding protein_coding MGP_C3HHeJ_T0092577.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101282 69111138 + MGP_C3HHeJ_P0092577 protein_coding protein_coding MGP_C3HHeJ_T0092578.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101284 69110776 + MGP_C3HHeJ_P0092578 protein_coding protein_coding MGP_C3HHeJ_T0092579.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101286 69111395 + MGP_C3HHeJ_P0092579 protein_coding protein_coding MGP_C3HHeJ_T0092580.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101306 69113619 + MGP_C3HHeJ_P0092580 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092581.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101453 69136509 + MGP_C3HHeJ_P0092581 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092582.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69101997 69110623 + protein_coding retained_intron MGP_C3HHeJ_T0092583.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69120153 69129132 + protein_coding processed_transcript MGP_C3HHeJ_T0092584.1 MGP_C3HHeJ_G0034673.1 mouse_genomes_project 9 69120311 69130451 + protein_coding retained_intron MGP_C3HHeJ_T0002308.1 MGP_C3HHeJ_G0002227.1 mouse_genomes_project 9 18798797 18801493 + TEC TEC MGP_C3HHeJ_T0090641.1 MGP_C3HHeJ_G0033988.1 mouse_genomes_project 9 168526 232600 + MGP_C3HHeJ_P0090641 Alkbh8 protein_coding protein_coding MGP_C3HHeJ_T0090642.1 MGP_C3HHeJ_G0033988.1 mouse_genomes_project 9 168578 231149 + MGP_C3HHeJ_P0090642 Alkbh8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090643.1 MGP_C3HHeJ_G0033988.1 mouse_genomes_project 9 174863 231392 + MGP_C3HHeJ_P0090643 Alkbh8 protein_coding protein_coding MGP_C3HHeJ_T0091416.1 MGP_C3HHeJ_G0034294.1 mouse_genomes_project 9 37077206 37081274 + MGP_C3HHeJ_P0091416 Olfr920 protein_coding protein_coding MGP_C3HHeJ_T0005402.1 MGP_C3HHeJ_G0004560.1 mouse_genomes_project 9 72431981 72435051 - Gm27241 antisense antisense MGP_C3HHeJ_T0005403.1 MGP_C3HHeJ_G0004560.1 mouse_genomes_project 9 72432115 72435223 - Gm27241 antisense antisense MGP_C3HHeJ_T0090861.1 MGP_C3HHeJ_G0034066.1 mouse_genomes_project 9 16234656 16235604 + MGP_C3HHeJ_P0090861 Olfr830 protein_coding protein_coding MGP_C3HHeJ_T0092830.1 MGP_C3HHeJ_G0034724.1 mouse_genomes_project 9 75453800 75501368 - MGP_C3HHeJ_P0092830 Tmod2 protein_coding protein_coding MGP_C3HHeJ_T0092831.1 MGP_C3HHeJ_G0034724.1 mouse_genomes_project 9 75453800 75488876 - MGP_C3HHeJ_P0092831 Tmod2 protein_coding protein_coding MGP_C3HHeJ_T0092832.1 MGP_C3HHeJ_G0034724.1 mouse_genomes_project 9 75461885 75487394 - MGP_C3HHeJ_P0092832 Tmod2 protein_coding protein_coding MGP_C3HHeJ_T0101009.1 MGP_C3HHeJ_G0039203.1 mouse_genomes_project 9 115206206 115206323 - Gm25059 snoRNA snoRNA MGP_C3HHeJ_T0092500.1 MGP_C3HHeJ_G0034657.1 mouse_genomes_project 9 65755494 65878148 + MGP_C3HHeJ_P0092500 Dapk2 protein_coding protein_coding MGP_C3HHeJ_T0092501.1 MGP_C3HHeJ_G0034657.1 mouse_genomes_project 9 65755506 65824350 + Dapk2 protein_coding retained_intron MGP_C3HHeJ_T0092502.1 MGP_C3HHeJ_G0034657.1 mouse_genomes_project 9 65823017 65874862 + MGP_C3HHeJ_P0092502 Dapk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092503.1 MGP_C3HHeJ_G0034657.1 mouse_genomes_project 9 65874336 65877621 + Dapk2 protein_coding retained_intron MGP_C3HHeJ_T0091920.1 MGP_C3HHeJ_G0034485.1 mouse_genomes_project 9 50676672 50700847 + Arhgap20 protein_coding retained_intron MGP_C3HHeJ_T0091921.1 MGP_C3HHeJ_G0034485.1 mouse_genomes_project 9 50676680 50742445 + Arhgap20 protein_coding retained_intron MGP_C3HHeJ_T0091922.1 MGP_C3HHeJ_G0034485.1 mouse_genomes_project 9 50676687 50770612 + MGP_C3HHeJ_P0091922 Arhgap20 protein_coding protein_coding MGP_C3HHeJ_T0091923.1 MGP_C3HHeJ_G0034485.1 mouse_genomes_project 9 50676911 50770621 + MGP_C3HHeJ_P0091923 Arhgap20 protein_coding protein_coding MGP_C3HHeJ_T0091924.1 MGP_C3HHeJ_G0034485.1 mouse_genomes_project 9 50731174 50746159 + Arhgap20 protein_coding processed_transcript MGP_C3HHeJ_T0091925.1 MGP_C3HHeJ_G0034485.1 mouse_genomes_project 9 50748533 50765405 + Arhgap20 protein_coding processed_transcript MGP_C3HHeJ_T0099712.1 MGP_C3HHeJ_G0037906.1 mouse_genomes_project 9 72798947 72799054 + Gm23567 snRNA snRNA MGP_C3HHeJ_T0094385.1 MGP_C3HHeJ_G0035022.1 mouse_genomes_project 9 111032735 111034943 - MGP_C3HHeJ_P0094385 Camp protein_coding protein_coding MGP_C3HHeJ_T0101011.1 MGP_C3HHeJ_G0039205.1 mouse_genomes_project 9 121926830 121926986 + Gm24044 snoRNA snoRNA MGP_C3HHeJ_T0094937.1 MGP_C3HHeJ_G0035163.1 mouse_genomes_project 9 125508029 125549358 - MGP_C3HHeJ_P0094937 protein_coding protein_coding MGP_C3HHeJ_T0094938.1 MGP_C3HHeJ_G0035163.1 mouse_genomes_project 9 125525318 125549076 - MGP_C3HHeJ_P0094938 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094939.1 MGP_C3HHeJ_G0035163.1 mouse_genomes_project 9 125526922 125549294 - protein_coding processed_transcript MGP_C3HHeJ_T0090874.1 MGP_C3HHeJ_G0034079.1 mouse_genomes_project 9 16849795 16850734 + MGP_C3HHeJ_P0090874 Olfr851 protein_coding protein_coding MGP_C3HHeJ_T0094909.1 MGP_C3HHeJ_G0035152.1 mouse_genomes_project 9 124840006 124912132 + MGP_C3HHeJ_P0094909 Kif15 protein_coding protein_coding MGP_C3HHeJ_T0005354.1 MGP_C3HHeJ_G0004528.1 mouse_genomes_project 9 30680632 30682152 - Gm27240 antisense antisense MGP_C3HHeJ_T0101000.1 MGP_C3HHeJ_G0039194.1 mouse_genomes_project 9 103745737 103745867 - Gm22595 snoRNA snoRNA MGP_C3HHeJ_T0094126.1 MGP_C3HHeJ_G0034979.1 mouse_genomes_project 9 109363689 109389251 - MGP_C3HHeJ_P0094126 Ccdc36 protein_coding protein_coding MGP_C3HHeJ_T0092740.1 MGP_C3HHeJ_G0034700.1 mouse_genomes_project 9 72632124 72744999 + MGP_C3HHeJ_P0092740 Prtg protein_coding protein_coding MGP_C3HHeJ_T0092741.1 MGP_C3HHeJ_G0034700.1 mouse_genomes_project 9 72738337 72740015 + Prtg protein_coding retained_intron MGP_C3HHeJ_T0015900.1 MGP_C3HHeJ_G0014004.1 mouse_genomes_project 9 90536321 90536605 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100954.1 MGP_C3HHeJ_G0039148.1 mouse_genomes_project 9 22647815 22647949 + Gm23893 snoRNA snoRNA MGP_C3HHeJ_T0011644.1 MGP_C3HHeJ_G0009777.1 mouse_genomes_project 9 61389007 61389100 + Gm23221 misc_RNA misc_RNA MGP_C3HHeJ_T0010979.1 MGP_C3HHeJ_G0009112.1 mouse_genomes_project 9 52353397 52353479 - Mir130c miRNA miRNA MGP_C3HHeJ_T0090865.1 MGP_C3HHeJ_G0034070.1 mouse_genomes_project 9 16400904 16401840 + MGP_C3HHeJ_P0090865 Olfr835 protein_coding protein_coding MGP_C3HHeJ_T0101006.1 MGP_C3HHeJ_G0039200.1 mouse_genomes_project 9 111346540 111346678 - Gm23377 snoRNA snoRNA MGP_C3HHeJ_T0091693.1 MGP_C3HHeJ_G0034415.1 mouse_genomes_project 9 43795702 43811426 + MGP_C3HHeJ_P0091693 Scn4b protein_coding protein_coding MGP_C3HHeJ_T0092341.1 MGP_C3HHeJ_G0034611.1 mouse_genomes_project 9 62596350 62814608 - MGP_C3HHeJ_P0092341 Map2k5 protein_coding protein_coding MGP_C3HHeJ_T0099722.1 MGP_C3HHeJ_G0037916.1 mouse_genomes_project 9 90647268 90647445 + Gm22866 snRNA snRNA MGP_C3HHeJ_T0002414.1 MGP_C3HHeJ_G0002332.1 mouse_genomes_project 9 105995419 105996828 + TEC TEC MGP_C3HHeJ_T0094475.1 MGP_C3HHeJ_G0035033.1 mouse_genomes_project 9 111741314 111754269 + MGP_C3HHeJ_P0094475 Kif9 protein_coding protein_coding MGP_C3HHeJ_T0094476.1 MGP_C3HHeJ_G0035033.1 mouse_genomes_project 9 111741350 111791413 + MGP_C3HHeJ_P0094476 Kif9 protein_coding protein_coding MGP_C3HHeJ_T0094477.1 MGP_C3HHeJ_G0035033.1 mouse_genomes_project 9 111741350 111791272 + MGP_C3HHeJ_P0094477 Kif9 protein_coding protein_coding MGP_C3HHeJ_T0094478.1 MGP_C3HHeJ_G0035033.1 mouse_genomes_project 9 111741350 111788365 + MGP_C3HHeJ_P0094478 Kif9 protein_coding protein_coding MGP_C3HHeJ_T0094479.1 MGP_C3HHeJ_G0035033.1 mouse_genomes_project 9 111742561 111790071 + MGP_C3HHeJ_P0094479 Kif9 protein_coding protein_coding MGP_C3HHeJ_T0092128.1 MGP_C3HHeJ_G0034557.1 mouse_genomes_project 9 56763085 56770542 - MGP_C3HHeJ_P0092128 Csk protein_coding unknown_likely_coding MGP_C3HHeJ_T0091405.1 MGP_C3HHeJ_G0034289.1 mouse_genomes_project 9 36978761 36979694 - MGP_C3HHeJ_P0091405 Olfr916 protein_coding protein_coding MGP_C3HHeJ_T0015921.1 MGP_C3HHeJ_G0014025.1 mouse_genomes_project 9 97310720 97310988 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094464.1 MGP_C3HHeJ_G0035030.1 mouse_genomes_project 9 111639866 111663394 - MGP_C3HHeJ_P0094464 Ptpn23 protein_coding protein_coding MGP_C3HHeJ_T0094465.1 MGP_C3HHeJ_G0035030.1 mouse_genomes_project 9 111640108 111641032 - MGP_C3HHeJ_P0094465 Ptpn23 protein_coding protein_coding MGP_C3HHeJ_T0094466.1 MGP_C3HHeJ_G0035030.1 mouse_genomes_project 9 111640624 111641434 - Ptpn23 protein_coding retained_intron MGP_C3HHeJ_T0094467.1 MGP_C3HHeJ_G0035030.1 mouse_genomes_project 9 111644937 111646162 - Ptpn23 protein_coding retained_intron MGP_C3HHeJ_T0091523.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40940479 41001030 - MGP_C3HHeJ_P0091523 Tbcel protein_coding protein_coding MGP_C3HHeJ_T0091524.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40940479 40985782 - MGP_C3HHeJ_P0091524 Tbcel protein_coding protein_coding MGP_C3HHeJ_T0091525.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40941581 40989640 - MGP_C3HHeJ_P0091525 Tbcel protein_coding protein_coding MGP_C3HHeJ_T0091526.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40942154 40956407 - Tbcel protein_coding processed_transcript MGP_C3HHeJ_T0091527.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40943839 41001037 - MGP_C3HHeJ_P0091527 Tbcel protein_coding protein_coding MGP_C3HHeJ_T0091528.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40943953 41000990 - MGP_C3HHeJ_P0091528 Tbcel protein_coding protein_coding MGP_C3HHeJ_T0091529.1 MGP_C3HHeJ_G0034360.1 mouse_genomes_project 9 40978165 41036908 - MGP_C3HHeJ_P0091529 Tbcel protein_coding protein_coding MGP_C3HHeJ_T0002351.1 MGP_C3HHeJ_G0002270.1 mouse_genomes_project 9 76714098 76717369 + TEC TEC MGP_C3HHeJ_T0091545.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42661825 42690378 + MGP_C3HHeJ_P0091545 Usp2 protein_coding protein_coding MGP_C3HHeJ_T0091546.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42661882 42688706 + MGP_C3HHeJ_P0091546 Usp2 protein_coding protein_coding MGP_C3HHeJ_T0091547.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42664239 42688747 + MGP_C3HHeJ_P0091547 Usp2 protein_coding protein_coding MGP_C3HHeJ_T0091548.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42666983 42670704 + MGP_C3HHeJ_P0091548 Usp2 protein_coding protein_coding MGP_C3HHeJ_T0091549.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42679716 42688703 + MGP_C3HHeJ_P0091549 Usp2 protein_coding protein_coding MGP_C3HHeJ_T0091550.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42679717 42689232 + MGP_C3HHeJ_P0091550 Usp2 protein_coding protein_coding MGP_C3HHeJ_T0091551.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42681957 42687284 + MGP_C3HHeJ_P0091551 Usp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091552.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42687251 42689118 + Usp2 protein_coding processed_transcript MGP_C3HHeJ_T0091553.1 MGP_C3HHeJ_G0034372.1 mouse_genomes_project 9 42687457 42688710 + Usp2 protein_coding processed_transcript MGP_C3HHeJ_T0092414.1 MGP_C3HHeJ_G0034627.1 mouse_genomes_project 9 64323513 64435113 + MGP_C3HHeJ_P0092414 Dennd4a protein_coding protein_coding MGP_C3HHeJ_T0093588.1 MGP_C3HHeJ_G0034891.1 mouse_genomes_project 9 105053543 105103361 - MGP_C3HHeJ_P0093588 Acpp protein_coding protein_coding MGP_C3HHeJ_T0093589.1 MGP_C3HHeJ_G0034891.1 mouse_genomes_project 9 105056276 105066453 - Acpp protein_coding processed_transcript MGP_C3HHeJ_T0093590.1 MGP_C3HHeJ_G0034891.1 mouse_genomes_project 9 105064227 105103340 - MGP_C3HHeJ_P0093590 Acpp protein_coding protein_coding MGP_C3HHeJ_T0093591.1 MGP_C3HHeJ_G0034891.1 mouse_genomes_project 9 105071900 105103315 - Acpp protein_coding retained_intron MGP_C3HHeJ_T0093592.1 MGP_C3HHeJ_G0034891.1 mouse_genomes_project 9 105084721 105103340 - Acpp protein_coding retained_intron MGP_C3HHeJ_T0091408.1 MGP_C3HHeJ_G0034292.1 mouse_genomes_project 9 37019673 37021385 - MGP_C3HHeJ_P0091408 Olfr919 protein_coding protein_coding MGP_C3HHeJ_T0002419.1 MGP_C3HHeJ_G0002337.1 mouse_genomes_project 9 108757431 108758503 - TEC TEC MGP_C3HHeJ_T0094833.1 MGP_C3HHeJ_G0035127.1 mouse_genomes_project 9 123426800 123496769 - MGP_C3HHeJ_P0094833 Lyzl4 protein_coding protein_coding MGP_C3HHeJ_T0094834.1 MGP_C3HHeJ_G0035127.1 mouse_genomes_project 9 123426806 123497300 - MGP_C3HHeJ_P0094834 Lyzl4 protein_coding protein_coding MGP_C3HHeJ_T0094835.1 MGP_C3HHeJ_G0035127.1 mouse_genomes_project 9 123433044 123496729 - MGP_C3HHeJ_P0094835 Lyzl4 protein_coding protein_coding MGP_C3HHeJ_T0093559.1 MGP_C3HHeJ_G0034886.1 mouse_genomes_project 9 104801332 104837657 + MGP_C3HHeJ_P0093559 Gm28305 protein_coding protein_coding MGP_C3HHeJ_T0002438.1 MGP_C3HHeJ_G0002356.1 mouse_genomes_project 9 121980780 121981414 + TEC TEC MGP_C3HHeJ_T0098207.1 MGP_C3HHeJ_G0036419.1 mouse_genomes_project 9 73900034 73900153 + n-R5s86 rRNA rRNA MGP_C3HHeJ_T0015933.1 MGP_C3HHeJ_G0014037.1 mouse_genomes_project 9 102118411 102118774 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005388.1 MGP_C3HHeJ_G0004550.1 mouse_genomes_project 9 59242648 59250341 + Gm7616 antisense antisense MGP_C3HHeJ_T0091604.1 MGP_C3HHeJ_G0034387.1 mouse_genomes_project 9 42962601 42976431 - MGP_C3HHeJ_P0091604 Vps11 protein_coding protein_coding MGP_C3HHeJ_T0015822.1 MGP_C3HHeJ_G0013926.1 mouse_genomes_project 9 22794903 22794981 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090857.1 MGP_C3HHeJ_G0034062.1 mouse_genomes_project 9 15822371 15843120 - MGP_C3HHeJ_P0090857 protein_coding protein_coding MGP_C3HHeJ_T0090888.1 MGP_C3HHeJ_G0034093.1 mouse_genomes_project 9 17685770 17691279 + MGP_C3HHeJ_P0090888 protein_coding protein_coding MGP_C3HHeJ_T0099671.1 MGP_C3HHeJ_G0037865.1 mouse_genomes_project 9 241657 241761 + Gm23275 snRNA snRNA MGP_C3HHeJ_T0093991.1 MGP_C3HHeJ_G0034957.1 mouse_genomes_project 9 108878377 108892391 + MGP_C3HHeJ_P0093991 Camkv protein_coding protein_coding MGP_C3HHeJ_T0093992.1 MGP_C3HHeJ_G0034957.1 mouse_genomes_project 9 108878601 108892377 + Camkv protein_coding retained_intron MGP_C3HHeJ_T0093993.1 MGP_C3HHeJ_G0034957.1 mouse_genomes_project 9 108878611 108888895 + MGP_C3HHeJ_P0093993 Camkv protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093994.1 MGP_C3HHeJ_G0034957.1 mouse_genomes_project 9 108880003 108888244 + MGP_C3HHeJ_P0093994 Camkv protein_coding protein_coding MGP_C3HHeJ_T0093995.1 MGP_C3HHeJ_G0034957.1 mouse_genomes_project 9 108887965 108892383 + MGP_C3HHeJ_P0093995 Camkv protein_coding protein_coding MGP_C3HHeJ_T0015885.1 MGP_C3HHeJ_G0013989.1 mouse_genomes_project 9 83659287 83659675 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002410.1 MGP_C3HHeJ_G0002328.1 mouse_genomes_project 9 104804671 104806844 - TEC TEC MGP_C3HHeJ_T0090989.1 MGP_C3HHeJ_G0034129.1 mouse_genomes_project 9 18815009 18818164 - MGP_C3HHeJ_P0090989 Cdkn2d protein_coding protein_coding MGP_C3HHeJ_T0009227.1 MGP_C3HHeJ_G0007407.1 mouse_genomes_project 9 99286828 99353143 - E330023G01Rik lincRNA lincRNA MGP_C3HHeJ_T0090911.1 MGP_C3HHeJ_G0034101.1 mouse_genomes_project 9 17992168 18018519 - MGP_C3HHeJ_P0090911 Zfp266 protein_coding protein_coding MGP_C3HHeJ_T0090912.1 MGP_C3HHeJ_G0034101.1 mouse_genomes_project 9 17996165 18018510 - MGP_C3HHeJ_P0090912 Zfp266 protein_coding protein_coding MGP_C3HHeJ_T0015887.1 MGP_C3HHeJ_G0013991.1 mouse_genomes_project 9 84166857 84168369 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011657.1 MGP_C3HHeJ_G0009790.1 mouse_genomes_project 9 123076355 123076601 + Gm22987 misc_RNA misc_RNA MGP_C3HHeJ_T0093836.1 MGP_C3HHeJ_G0034936.1 mouse_genomes_project 9 108462226 108466959 + MGP_C3HHeJ_P0093836 Tmem115 protein_coding protein_coding MGP_C3HHeJ_T0092070.1 MGP_C3HHeJ_G0034536.1 mouse_genomes_project 9 55938038 55972769 + MGP_C3HHeJ_P0092070 Cspg4 protein_coding protein_coding MGP_C3HHeJ_T0093887.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108515846 108521313 + MGP_C3HHeJ_P0093887 Ifrd2 protein_coding protein_coding MGP_C3HHeJ_T0093888.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108515930 108521313 + Ifrd2 protein_coding retained_intron MGP_C3HHeJ_T0093889.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108515961 108519898 + MGP_C3HHeJ_P0093889 Ifrd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093890.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108518639 108519511 + Ifrd2 protein_coding retained_intron MGP_C3HHeJ_T0093891.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108519310 108520983 + MGP_C3HHeJ_P0093891 Ifrd2 protein_coding protein_coding MGP_C3HHeJ_T0093892.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108520359 108521029 + MGP_C3HHeJ_P0093892 Ifrd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093893.1 MGP_C3HHeJ_G0034946.1 mouse_genomes_project 9 108520901 108522185 + Ifrd2 protein_coding processed_transcript MGP_C3HHeJ_T0094769.1 MGP_C3HHeJ_G0035106.1 mouse_genomes_project 9 121247840 121328878 - MGP_C3HHeJ_P0094769 Scn5a protein_coding protein_coding MGP_C3HHeJ_T0094770.1 MGP_C3HHeJ_G0035106.1 mouse_genomes_project 9 121247842 121345223 - MGP_C3HHeJ_P0094770 Scn5a protein_coding protein_coding MGP_C3HHeJ_T0094771.1 MGP_C3HHeJ_G0035106.1 mouse_genomes_project 9 121248756 121345223 - MGP_C3HHeJ_P0094771 Scn5a protein_coding protein_coding MGP_C3HHeJ_T0094772.1 MGP_C3HHeJ_G0035106.1 mouse_genomes_project 9 121250010 121328824 - MGP_C3HHeJ_P0094772 Scn5a protein_coding unknown_likely_coding MGP_C3HHeJ_T0094773.1 MGP_C3HHeJ_G0035106.1 mouse_genomes_project 9 121328736 121329705 - MGP_C3HHeJ_P0094773 Scn5a protein_coding protein_coding MGP_C3HHeJ_T0092124.1 MGP_C3HHeJ_G0034554.1 mouse_genomes_project 9 56723515 56730327 + MGP_C3HHeJ_P0092124 Ulk3 protein_coding protein_coding MGP_C3HHeJ_T0091409.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37042670 37067748 + MGP_C3HHeJ_P0091409 Vwa5a protein_coding protein_coding MGP_C3HHeJ_T0091410.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37042674 37067173 + MGP_C3HHeJ_P0091410 Vwa5a protein_coding protein_coding MGP_C3HHeJ_T0091411.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37043440 37047019 + MGP_C3HHeJ_P0091411 Vwa5a protein_coding protein_coding MGP_C3HHeJ_T0091412.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37052894 37059130 + Vwa5a protein_coding retained_intron MGP_C3HHeJ_T0091413.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37058921 37060557 + Vwa5a protein_coding retained_intron MGP_C3HHeJ_T0091414.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37060397 37062401 + Vwa5a protein_coding retained_intron MGP_C3HHeJ_T0091415.1 MGP_C3HHeJ_G0034293.1 mouse_genomes_project 9 37060595 37066331 + MGP_C3HHeJ_P0091415 Vwa5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090851.1 MGP_C3HHeJ_G0034059.1 mouse_genomes_project 9 15772873 15775730 + MGP_C3HHeJ_P0090851 Mbd3l2 protein_coding protein_coding MGP_C3HHeJ_T0091073.1 MGP_C3HHeJ_G0034161.1 mouse_genomes_project 9 19750459 19751972 + MGP_C3HHeJ_P0091073 Pigyl protein_coding protein_coding MGP_C3HHeJ_T0091074.1 MGP_C3HHeJ_G0034161.1 mouse_genomes_project 9 19750559 19751939 + MGP_C3HHeJ_P0091074 Pigyl protein_coding protein_coding MGP_C3HHeJ_T0091442.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37955243 37973193 - MGP_C3HHeJ_P0091442 AW551984 protein_coding protein_coding MGP_C3HHeJ_T0091443.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37955357 37972755 - MGP_C3HHeJ_P0091443 AW551984 protein_coding protein_coding MGP_C3HHeJ_T0091444.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37956809 37959659 - AW551984 protein_coding retained_intron MGP_C3HHeJ_T0091445.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37959264 37960907 - AW551984 protein_coding retained_intron MGP_C3HHeJ_T0091446.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37968439 37973472 - MGP_C3HHeJ_P0091446 AW551984 protein_coding protein_coding MGP_C3HHeJ_T0091447.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37969076 37972695 - AW551984 protein_coding retained_intron MGP_C3HHeJ_T0091448.1 MGP_C3HHeJ_G0034320.1 mouse_genomes_project 9 37969337 37972445 - MGP_C3HHeJ_P0091448 AW551984 protein_coding protein_coding MGP_C3HHeJ_T0092265.1 MGP_C3HHeJ_G0034592.1 mouse_genomes_project 9 59258819 59801675 - MGP_C3HHeJ_P0092265 Thsd4 protein_coding protein_coding MGP_C3HHeJ_T0092266.1 MGP_C3HHeJ_G0034592.1 mouse_genomes_project 9 59258819 59815757 - MGP_C3HHeJ_P0092266 Thsd4 protein_coding protein_coding MGP_C3HHeJ_T0092267.1 MGP_C3HHeJ_G0034592.1 mouse_genomes_project 9 59261609 59435304 - MGP_C3HHeJ_P0092267 Thsd4 protein_coding protein_coding MGP_C3HHeJ_T0092268.1 MGP_C3HHeJ_G0034592.1 mouse_genomes_project 9 59286579 59295120 - Thsd4 protein_coding retained_intron MGP_C3HHeJ_T0092269.1 MGP_C3HHeJ_G0034592.1 mouse_genomes_project 9 59732069 59828476 - MGP_C3HHeJ_P0092269 Thsd4 protein_coding protein_coding MGP_C3HHeJ_T0092270.1 MGP_C3HHeJ_G0034592.1 mouse_genomes_project 9 59814596 59815729 - Thsd4 protein_coding processed_transcript MGP_C3HHeJ_T0093984.1 MGP_C3HHeJ_G0034954.1 mouse_genomes_project 9 108830942 108845930 + MGP_C3HHeJ_P0093984 Mon1a protein_coding protein_coding MGP_C3HHeJ_T0093985.1 MGP_C3HHeJ_G0034954.1 mouse_genomes_project 9 108830973 108845935 + MGP_C3HHeJ_P0093985 Mon1a protein_coding protein_coding MGP_C3HHeJ_T0091040.1 MGP_C3HHeJ_G0034146.1 mouse_genomes_project 9 19471666 19482368 - MGP_C3HHeJ_P0091040 Rab3d protein_coding protein_coding MGP_C3HHeJ_T0091041.1 MGP_C3HHeJ_G0034146.1 mouse_genomes_project 9 19471685 19482315 - MGP_C3HHeJ_P0091041 Rab3d protein_coding protein_coding MGP_C3HHeJ_T0091042.1 MGP_C3HHeJ_G0034146.1 mouse_genomes_project 9 19472817 19482293 - MGP_C3HHeJ_P0091042 Rab3d protein_coding protein_coding MGP_C3HHeJ_T0091043.1 MGP_C3HHeJ_G0034146.1 mouse_genomes_project 9 19479067 19482265 - MGP_C3HHeJ_P0091043 Rab3d protein_coding protein_coding MGP_C3HHeJ_T0091044.1 MGP_C3HHeJ_G0034146.1 mouse_genomes_project 9 19479790 19482297 - Rab3d protein_coding retained_intron MGP_C3HHeJ_T0091619.1 MGP_C3HHeJ_G0034394.1 mouse_genomes_project 9 43067912 43069964 - MGP_C3HHeJ_P0091619 Upk2 protein_coding protein_coding MGP_C3HHeJ_T0090965.1 MGP_C3HHeJ_G0034121.1 mouse_genomes_project 9 18585553 18603741 - MGP_C3HHeJ_P0090965 Raver1 protein_coding protein_coding MGP_C3HHeJ_T0092891.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78157431 78217255 + MGP_C3HHeJ_P0092891 Ick protein_coding protein_coding MGP_C3HHeJ_T0092892.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78157474 78161667 + MGP_C3HHeJ_P0092892 Ick protein_coding protein_coding MGP_C3HHeJ_T0092893.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78161080 78166704 + Ick protein_coding processed_transcript MGP_C3HHeJ_T0092894.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78161478 78182354 + Ick protein_coding retained_intron MGP_C3HHeJ_T0092895.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78161521 78173891 + MGP_C3HHeJ_P0092895 Ick protein_coding protein_coding MGP_C3HHeJ_T0092896.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78161537 78214729 + MGP_C3HHeJ_P0092896 Ick protein_coding protein_coding MGP_C3HHeJ_T0092897.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78161552 78221434 + MGP_C3HHeJ_P0092897 Ick protein_coding protein_coding MGP_C3HHeJ_T0092898.1 MGP_C3HHeJ_G0034740.1 mouse_genomes_project 9 78204178 78219780 + Ick protein_coding retained_intron MGP_C3HHeJ_T0015949.1 MGP_C3HHeJ_G0014053.1 mouse_genomes_project 9 111120117 111120517 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091398.1 MGP_C3HHeJ_G0034282.1 mouse_genomes_project 9 36768743 36769676 + MGP_C3HHeJ_P0091398 Olfr904 protein_coding protein_coding MGP_C3HHeJ_T0091464.1 MGP_C3HHeJ_G0034336.1 mouse_genomes_project 9 38346102 38348915 - MGP_C3HHeJ_P0091464 Olfr976 protein_coding protein_coding MGP_C3HHeJ_T0005404.1 MGP_C3HHeJ_G0004561.1 mouse_genomes_project 9 72436862 72437690 - Gm27232 antisense antisense MGP_C3HHeJ_T0100991.1 MGP_C3HHeJ_G0039185.1 mouse_genomes_project 9 88128159 88128291 - Gm25528 snoRNA snoRNA MGP_C3HHeJ_T0093949.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108674411 108704690 - MGP_C3HHeJ_P0093949 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093950.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108674536 108704675 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093951.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108674537 108694311 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093952.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108674541 108704681 - MGP_C3HHeJ_P0093952 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093953.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108674541 108704674 - MGP_C3HHeJ_P0093953 Rbm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093954.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108676014 108678338 - MGP_C3HHeJ_P0093954 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093955.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108677384 108678286 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093956.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108678320 108684070 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093957.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108679245 108683959 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093958.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108680094 108704645 - MGP_C3HHeJ_P0093958 Rbm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093959.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108680195 108685974 - MGP_C3HHeJ_P0093959 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093960.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108684340 108686026 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093961.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108684547 108687910 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093962.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108685944 108688422 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093963.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108685973 108701291 - MGP_C3HHeJ_P0093963 Rbm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093964.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108687914 108704666 - MGP_C3HHeJ_P0093964 Rbm5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093965.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108687918 108690991 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093966.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108687942 108704189 - MGP_C3HHeJ_P0093966 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093967.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108692197 108704653 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093968.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108694066 108704653 - MGP_C3HHeJ_P0093968 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093969.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108694131 108704639 - MGP_C3HHeJ_P0093969 Rbm5 protein_coding protein_coding MGP_C3HHeJ_T0093970.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108698787 108704683 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093971.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108700303 108704680 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0093972.1 MGP_C3HHeJ_G0034952.1 mouse_genomes_project 9 108702878 108704653 - Rbm5 protein_coding retained_intron MGP_C3HHeJ_T0091426.1 MGP_C3HHeJ_G0034304.1 mouse_genomes_project 9 37328001 37328928 - MGP_C3HHeJ_P0091426 Olfr935 protein_coding protein_coding MGP_C3HHeJ_T0010965.1 MGP_C3HHeJ_G0009098.1 mouse_genomes_project 9 40037853 40037933 + Mir100 miRNA miRNA MGP_C3HHeJ_T0009128.1 MGP_C3HHeJ_G0007327.1 mouse_genomes_project 9 19649577 19667128 + Gm16845 lincRNA lincRNA MGP_C3HHeJ_T0092328.1 MGP_C3HHeJ_G0034605.1 mouse_genomes_project 9 62084958 62200361 + MGP_C3HHeJ_P0092328 Itga11 protein_coding protein_coding MGP_C3HHeJ_T0092329.1 MGP_C3HHeJ_G0034605.1 mouse_genomes_project 9 62084992 62192534 + Itga11 protein_coding retained_intron MGP_C3HHeJ_T0094711.1 MGP_C3HHeJ_G0035088.1 mouse_genomes_project 9 119751583 119830894 - MGP_C3HHeJ_P0094711 Cmc1 protein_coding protein_coding MGP_C3HHeJ_T0010961.1 MGP_C3HHeJ_G0009094.1 mouse_genomes_project 9 26099370 26099467 + Gm44316 miRNA miRNA MGP_C3HHeJ_T0098205.1 MGP_C3HHeJ_G0036417.1 mouse_genomes_project 9 63510280 63510375 + Gm25606 rRNA rRNA MGP_C3HHeJ_T0097949.1 MGP_C3HHeJ_G0036161.1 mouse_genomes_project 9 68517365 68517805 + pseudogene pseudogene MGP_C3HHeJ_T0091395.1 MGP_C3HHeJ_G0034279.1 mouse_genomes_project 9 36699498 36701609 + MGP_C3HHeJ_P0091395 Olfr147 protein_coding protein_coding MGP_C3HHeJ_T0091283.1 MGP_C3HHeJ_G0034229.1 mouse_genomes_project 9 33857027 34258679 - MGP_C3HHeJ_P0091283 protein_coding protein_coding MGP_C3HHeJ_T0100956.1 MGP_C3HHeJ_G0039150.1 mouse_genomes_project 9 23273164 23273292 - Gm25346 snoRNA snoRNA MGP_C3HHeJ_T0099680.1 MGP_C3HHeJ_G0037874.1 mouse_genomes_project 9 20405249 20405334 - Gm27639 snRNA snRNA MGP_C3HHeJ_T0010968.1 MGP_C3HHeJ_G0009101.1 mouse_genomes_project 9 40971021 40971090 + Gm44311 miRNA miRNA MGP_C3HHeJ_T0091556.1 MGP_C3HHeJ_G0034373.1 mouse_genomes_project 9 42696819 42705714 + MGP_C3HHeJ_P0091556 Mfrp protein_coding protein_coding MGP_C3HHeJ_T0091557.1 MGP_C3HHeJ_G0034373.1 mouse_genomes_project 9 42696828 42701610 + MGP_C3HHeJ_P0091557 Mfrp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091558.1 MGP_C3HHeJ_G0034373.1 mouse_genomes_project 9 42696844 42705711 + MGP_C3HHeJ_P0091558 Mfrp protein_coding protein_coding MGP_C3HHeJ_T0091559.1 MGP_C3HHeJ_G0034373.1 mouse_genomes_project 9 42696860 42705711 + MGP_C3HHeJ_P0091559 Mfrp protein_coding protein_coding MGP_C3HHeJ_T0091560.1 MGP_C3HHeJ_G0034373.1 mouse_genomes_project 9 42696878 42698388 + MGP_C3HHeJ_P0091560 Mfrp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091561.1 MGP_C3HHeJ_G0034373.1 mouse_genomes_project 9 42700266 42701512 + MGP_C3HHeJ_P0091561 Mfrp protein_coding protein_coding MGP_C3HHeJ_T0092232.1 MGP_C3HHeJ_G0034585.1 mouse_genomes_project 9 58853451 58883949 + MGP_C3HHeJ_P0092232 Celf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092233.1 MGP_C3HHeJ_G0034585.1 mouse_genomes_project 9 58853726 58883949 + MGP_C3HHeJ_P0092233 Celf6 protein_coding protein_coding MGP_C3HHeJ_T0092234.1 MGP_C3HHeJ_G0034585.1 mouse_genomes_project 9 58853726 58883949 + MGP_C3HHeJ_P0092234 Celf6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092235.1 MGP_C3HHeJ_G0034585.1 mouse_genomes_project 9 58853912 58883954 + MGP_C3HHeJ_P0092235 Celf6 protein_coding protein_coding MGP_C3HHeJ_T0092236.1 MGP_C3HHeJ_G0034585.1 mouse_genomes_project 9 58878172 58878926 + Celf6 protein_coding retained_intron MGP_C3HHeJ_T0092237.1 MGP_C3HHeJ_G0034585.1 mouse_genomes_project 9 58879547 58882756 + Celf6 protein_coding retained_intron MGP_C3HHeJ_T0091376.1 MGP_C3HHeJ_G0034261.1 mouse_genomes_project 9 36178906 36179971 + MGP_C3HHeJ_P0091376 Olfr878 protein_coding protein_coding MGP_C3HHeJ_T0094767.1 MGP_C3HHeJ_G0035105.1 mouse_genomes_project 9 121201096 121225114 + MGP_C3HHeJ_P0094767 Exog protein_coding protein_coding MGP_C3HHeJ_T0094768.1 MGP_C3HHeJ_G0035105.1 mouse_genomes_project 9 121201124 121223827 + MGP_C3HHeJ_P0094768 Exog protein_coding protein_coding MGP_C3HHeJ_T0094367.1 MGP_C3HHeJ_G0035018.1 mouse_genomes_project 9 110684601 110713261 - MGP_C3HHeJ_P0094367 Fbxw24 protein_coding protein_coding MGP_C3HHeJ_T0093826.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108319715 108455409 + MGP_C3HHeJ_P0093826 Cacna2d2 protein_coding protein_coding MGP_C3HHeJ_T0093827.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108319715 108455409 + MGP_C3HHeJ_P0093827 Cacna2d2 protein_coding protein_coding MGP_C3HHeJ_T0093828.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108319956 108455057 + MGP_C3HHeJ_P0093828 Cacna2d2 protein_coding protein_coding MGP_C3HHeJ_T0093829.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108319956 108455409 + MGP_C3HHeJ_P0093829 Cacna2d2 protein_coding protein_coding MGP_C3HHeJ_T0093830.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108320133 108453646 + MGP_C3HHeJ_P0093830 Cacna2d2 protein_coding protein_coding MGP_C3HHeJ_T0093831.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108320133 108455410 + MGP_C3HHeJ_P0093831 Cacna2d2 protein_coding protein_coding MGP_C3HHeJ_T0093832.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108431592 108439498 + Cacna2d2 protein_coding processed_transcript MGP_C3HHeJ_T0093833.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108435247 108439860 + Cacna2d2 protein_coding processed_transcript MGP_C3HHeJ_T0093834.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108447603 108449577 + Cacna2d2 protein_coding retained_intron MGP_C3HHeJ_T0093835.1 MGP_C3HHeJ_G0034935.1 mouse_genomes_project 9 108452749 108453660 + Cacna2d2 protein_coding retained_intron MGP_C3HHeJ_T0090689.1 MGP_C3HHeJ_G0034008.1 mouse_genomes_project 9 4605993 4616128 + MGP_C3HHeJ_P0090689 Mmp27 protein_coding protein_coding MGP_C3HHeJ_T0090690.1 MGP_C3HHeJ_G0034008.1 mouse_genomes_project 9 4606055 4616123 + MGP_C3HHeJ_P0090690 Mmp27 protein_coding protein_coding MGP_C3HHeJ_T0090691.1 MGP_C3HHeJ_G0034008.1 mouse_genomes_project 9 4606060 4616598 + MGP_C3HHeJ_P0090691 Mmp27 protein_coding protein_coding MGP_C3HHeJ_T0091733.1 MGP_C3HHeJ_G0034426.1 mouse_genomes_project 9 44610462 44634691 + MGP_C3HHeJ_P0091733 Pcsk7 protein_coding protein_coding MGP_C3HHeJ_T0092248.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59032726 59221855 + MGP_C3HHeJ_P0092248 Myo9a protein_coding protein_coding MGP_C3HHeJ_T0092249.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59032726 59221855 + MGP_C3HHeJ_P0092249 Myo9a protein_coding protein_coding MGP_C3HHeJ_T0092250.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59032726 59221855 + MGP_C3HHeJ_P0092250 Myo9a protein_coding protein_coding MGP_C3HHeJ_T0092251.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59162995 59177541 + Myo9a protein_coding processed_transcript MGP_C3HHeJ_T0092252.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59189208 59198952 + Myo9a protein_coding retained_intron MGP_C3HHeJ_T0092253.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59198524 59203384 + Myo9a protein_coding retained_intron MGP_C3HHeJ_T0092254.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59199777 59205307 + Myo9a protein_coding retained_intron MGP_C3HHeJ_T0092255.1 MGP_C3HHeJ_G0034590.1 mouse_genomes_project 9 59202631 59203674 + Myo9a protein_coding retained_intron MGP_C3HHeJ_T0091101.1 MGP_C3HHeJ_G0034173.1 mouse_genomes_project 9 22077413 22159523 - MGP_C3HHeJ_P0091101 Dpy19l1 protein_coding protein_coding MGP_C3HHeJ_T0091102.1 MGP_C3HHeJ_G0034173.1 mouse_genomes_project 9 22077415 22175341 - MGP_C3HHeJ_P0091102 Dpy19l1 protein_coding protein_coding MGP_C3HHeJ_T0091103.1 MGP_C3HHeJ_G0034173.1 mouse_genomes_project 9 22077440 22175341 - MGP_C3HHeJ_P0091103 Dpy19l1 protein_coding protein_coding MGP_C3HHeJ_T0091104.1 MGP_C3HHeJ_G0034173.1 mouse_genomes_project 9 22077688 22092692 - Dpy19l1 protein_coding retained_intron MGP_C3HHeJ_T0091105.1 MGP_C3HHeJ_G0034173.1 mouse_genomes_project 9 22091021 22095151 - Dpy19l1 protein_coding retained_intron MGP_C3HHeJ_T0091106.1 MGP_C3HHeJ_G0034173.1 mouse_genomes_project 9 22153039 22169373 - Dpy19l1 protein_coding processed_transcript MGP_C3HHeJ_T0100943.1 MGP_C3HHeJ_G0039137.1 mouse_genomes_project 9 12566846 12566983 + Gm25791 snoRNA snoRNA MGP_C3HHeJ_T0094774.1 MGP_C3HHeJ_G0035107.1 mouse_genomes_project 9 121377127 121490562 - MGP_C3HHeJ_P0094774 Scn10a protein_coding protein_coding MGP_C3HHeJ_T0094905.1 MGP_C3HHeJ_G0035150.1 mouse_genomes_project 9 124810206 124818159 + MGP_C3HHeJ_P0094905 Zfp105 protein_coding protein_coding MGP_C3HHeJ_T0094906.1 MGP_C3HHeJ_G0035150.1 mouse_genomes_project 9 124810233 124816809 + MGP_C3HHeJ_P0094906 Zfp105 protein_coding protein_coding MGP_C3HHeJ_T0091382.1 MGP_C3HHeJ_G0034266.1 mouse_genomes_project 9 36364545 36365475 + MGP_C3HHeJ_P0091382 Olfr887 protein_coding protein_coding MGP_C3HHeJ_T0015864.1 MGP_C3HHeJ_G0013968.1 mouse_genomes_project 9 74436505 74436695 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009220.1 MGP_C3HHeJ_G0007401.1 mouse_genomes_project 9 95102581 95104192 - Gm29395 lincRNA lincRNA MGP_C3HHeJ_T0094469.1 MGP_C3HHeJ_G0035032.1 mouse_genomes_project 9 111685216 111740951 - MGP_C3HHeJ_P0094469 Klhl18 protein_coding protein_coding MGP_C3HHeJ_T0094470.1 MGP_C3HHeJ_G0035032.1 mouse_genomes_project 9 111685224 111740947 - MGP_C3HHeJ_P0094470 Klhl18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094471.1 MGP_C3HHeJ_G0035032.1 mouse_genomes_project 9 111685224 111741046 - MGP_C3HHeJ_P0094471 Klhl18 protein_coding protein_coding MGP_C3HHeJ_T0094472.1 MGP_C3HHeJ_G0035032.1 mouse_genomes_project 9 111690247 111692110 - Klhl18 protein_coding retained_intron MGP_C3HHeJ_T0094473.1 MGP_C3HHeJ_G0035032.1 mouse_genomes_project 9 111695704 111712148 - MGP_C3HHeJ_P0094473 Klhl18 protein_coding protein_coding MGP_C3HHeJ_T0094474.1 MGP_C3HHeJ_G0035032.1 mouse_genomes_project 9 111696923 111704774 - Klhl18 protein_coding retained_intron MGP_C3HHeJ_T0093746.1 MGP_C3HHeJ_G0034918.1 mouse_genomes_project 9 107388239 107394239 + Rrp9 protein_coding processed_transcript MGP_C3HHeJ_T0093747.1 MGP_C3HHeJ_G0034918.1 mouse_genomes_project 9 107389545 107397789 + MGP_C3HHeJ_P0093747 Rrp9 protein_coding protein_coding MGP_C3HHeJ_T0093748.1 MGP_C3HHeJ_G0034918.1 mouse_genomes_project 9 107389594 107397781 + Rrp9 protein_coding retained_intron MGP_C3HHeJ_T0093749.1 MGP_C3HHeJ_G0034918.1 mouse_genomes_project 9 107389606 107390267 + Rrp9 protein_coding retained_intron MGP_C3HHeJ_T0093750.1 MGP_C3HHeJ_G0034918.1 mouse_genomes_project 9 107396218 107397787 + MGP_C3HHeJ_P0093750 Rrp9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093751.1 MGP_C3HHeJ_G0034918.1 mouse_genomes_project 9 107396828 107397789 + Rrp9 protein_coding retained_intron MGP_C3HHeJ_T0091543.1 MGP_C3HHeJ_G0034370.1 mouse_genomes_project 9 42630676 42637106 + MGP_C3HHeJ_P0091543 Thy1 protein_coding protein_coding MGP_C3HHeJ_T0002370.1 MGP_C3HHeJ_G0002288.1 mouse_genomes_project 9 90467275 90471388 - TEC TEC MGP_C3HHeJ_T0098211.1 MGP_C3HHeJ_G0036423.1 mouse_genomes_project 9 102845310 102845428 + n-R5s88 rRNA rRNA MGP_C3HHeJ_T0015832.1 MGP_C3HHeJ_G0013936.1 mouse_genomes_project 9 35932367 35933361 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094664.1 MGP_C3HHeJ_G0035071.1 mouse_genomes_project 9 115925815 115937149 + MGP_C3HHeJ_P0094664 Tmppe protein_coding protein_coding MGP_C3HHeJ_T0092283.1 MGP_C3HHeJ_G0034596.1 mouse_genomes_project 9 60136613 60155479 - MGP_C3HHeJ_P0092283 Gm9869 protein_coding protein_coding MGP_C3HHeJ_T0009180.1 MGP_C3HHeJ_G0007370.1 mouse_genomes_project 9 72212536 72213147 + Gm27255 lincRNA lincRNA MGP_C3HHeJ_T0094003.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918026 108918593 + Uba7 protein_coding processed_transcript MGP_C3HHeJ_T0094004.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918055 108926578 + MGP_C3HHeJ_P0094004 Uba7 protein_coding protein_coding MGP_C3HHeJ_T0094005.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918091 108926578 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094006.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918096 108926578 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094007.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918103 108923017 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094008.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918127 108918672 + Uba7 protein_coding processed_transcript MGP_C3HHeJ_T0094009.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918127 108926578 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094010.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918176 108926580 + MGP_C3HHeJ_P0094010 Uba7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094011.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918477 108926582 + MGP_C3HHeJ_P0094011 Uba7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094012.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108918829 108919488 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094013.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108919412 108920046 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094014.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108922260 108925307 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094015.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108923411 108925721 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094016.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108925546 108926575 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0094017.1 MGP_C3HHeJ_G0034959.1 mouse_genomes_project 9 108925556 108926473 + Uba7 protein_coding retained_intron MGP_C3HHeJ_T0091193.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30058367 30220556 + MGP_C3HHeJ_P0091193 Arhgap32 protein_coding protein_coding MGP_C3HHeJ_T0091194.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30071801 30128644 + MGP_C3HHeJ_P0091194 Arhgap32 protein_coding protein_coding MGP_C3HHeJ_T0091195.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30128588 30156919 + Arhgap32 protein_coding retained_intron MGP_C3HHeJ_T0091196.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30156003 30213328 + MGP_C3HHeJ_P0091196 Arhgap32 protein_coding protein_coding MGP_C3HHeJ_T0091197.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30174984 30216355 + MGP_C3HHeJ_P0091197 Arhgap32 protein_coding protein_coding MGP_C3HHeJ_T0091198.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30175327 30197710 + MGP_C3HHeJ_P0091198 Arhgap32 protein_coding protein_coding MGP_C3HHeJ_T0091199.1 MGP_C3HHeJ_G0034203.1 mouse_genomes_project 9 30196890 30201191 + Arhgap32 protein_coding retained_intron MGP_C3HHeJ_T0091369.1 MGP_C3HHeJ_G0034255.1 mouse_genomes_project 9 35903909 35913911 - MGP_C3HHeJ_P0091369 Panx3 protein_coding protein_coding MGP_C3HHeJ_T0091370.1 MGP_C3HHeJ_G0034255.1 mouse_genomes_project 9 35908918 35913862 - MGP_C3HHeJ_P0091370 Panx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099677.1 MGP_C3HHeJ_G0037871.1 mouse_genomes_project 9 17656904 17657057 + Gm25914 snRNA snRNA MGP_C3HHeJ_T0009254.1 MGP_C3HHeJ_G0007428.1 mouse_genomes_project 9 111923972 111924749 + Gm42470 lincRNA lincRNA MGP_C3HHeJ_T0094515.1 MGP_C3HHeJ_G0035038.1 mouse_genomes_project 9 111990439 112022446 - MGP_C3HHeJ_P0094515 Pth1r protein_coding protein_coding MGP_C3HHeJ_T0094516.1 MGP_C3HHeJ_G0035038.1 mouse_genomes_project 9 111990442 112012927 - MGP_C3HHeJ_P0094516 Pth1r protein_coding protein_coding MGP_C3HHeJ_T0094517.1 MGP_C3HHeJ_G0035038.1 mouse_genomes_project 9 111990496 112012096 - MGP_C3HHeJ_P0094517 Pth1r protein_coding protein_coding MGP_C3HHeJ_T0094518.1 MGP_C3HHeJ_G0035038.1 mouse_genomes_project 9 111995859 112022380 - MGP_C3HHeJ_P0094518 Pth1r protein_coding protein_coding MGP_C3HHeJ_T0094519.1 MGP_C3HHeJ_G0035038.1 mouse_genomes_project 9 112000003 112022469 - MGP_C3HHeJ_P0094519 Pth1r protein_coding protein_coding MGP_C3HHeJ_T0009166.1 MGP_C3HHeJ_G0007361.1 mouse_genomes_project 9 60055202 60083737 + 1700036A12Rik lincRNA lincRNA MGP_C3HHeJ_T0009167.1 MGP_C3HHeJ_G0007361.1 mouse_genomes_project 9 60083062 60083416 + 1700036A12Rik lincRNA lincRNA MGP_C3HHeJ_T0018346.1 MGP_C3HHeJ_G0015515.1 mouse_genomes_project 9 99505405 99515270 - processed_transcript lincRNA MGP_C3HHeJ_T0018347.1 MGP_C3HHeJ_G0015515.1 mouse_genomes_project 9 99513762 99514255 - processed_transcript retained_intron MGP_C3HHeJ_T0018348.1 MGP_C3HHeJ_G0015515.1 mouse_genomes_project 9 99513844 99514769 - processed_transcript retained_intron MGP_C3HHeJ_T0018349.1 MGP_C3HHeJ_G0015516.1 mouse_genomes_project 9 102469152 102561256 - Gm29521 processed_transcript lincRNA MGP_C3HHeJ_T0018350.1 MGP_C3HHeJ_G0015516.1 mouse_genomes_project 9 102558087 102561298 - Gm29521 processed_transcript retained_intron MGP_C3HHeJ_T0092416.1 MGP_C3HHeJ_G0034629.1 mouse_genomes_project 9 64476985 64503141 + MGP_C3HHeJ_P0092416 Vwa9 protein_coding protein_coding MGP_C3HHeJ_T0092417.1 MGP_C3HHeJ_G0034629.1 mouse_genomes_project 9 64477090 64503141 + MGP_C3HHeJ_P0092417 Vwa9 protein_coding protein_coding MGP_C3HHeJ_T0093416.1 MGP_C3HHeJ_G0034858.1 mouse_genomes_project 9 100299480 100322173 - MGP_C3HHeJ_P0093416 Cldn18 protein_coding protein_coding MGP_C3HHeJ_T0093417.1 MGP_C3HHeJ_G0034858.1 mouse_genomes_project 9 100301839 100329373 - MGP_C3HHeJ_P0093417 Cldn18 protein_coding protein_coding MGP_C3HHeJ_T0093418.1 MGP_C3HHeJ_G0034858.1 mouse_genomes_project 9 100302201 100322119 - MGP_C3HHeJ_P0093418 Cldn18 protein_coding protein_coding MGP_C3HHeJ_T0093419.1 MGP_C3HHeJ_G0034858.1 mouse_genomes_project 9 100302741 100329373 - MGP_C3HHeJ_P0093419 Cldn18 protein_coding protein_coding MGP_C3HHeJ_T0093564.1 MGP_C3HHeJ_G0034888.1 mouse_genomes_project 9 104826143 104828091 + Acad11 protein_coding retained_intron MGP_C3HHeJ_T0093565.1 MGP_C3HHeJ_G0034888.1 mouse_genomes_project 9 104826182 104891174 + MGP_C3HHeJ_P0093565 Acad11 protein_coding protein_coding MGP_C3HHeJ_T0093567.1 MGP_C3HHeJ_G0034888.1 mouse_genomes_project 9 104852789 104876962 + Acad11 protein_coding processed_transcript MGP_C3HHeJ_T0093568.1 MGP_C3HHeJ_G0034888.1 mouse_genomes_project 9 104858302 104871480 + MGP_C3HHeJ_P0093568 Acad11 protein_coding protein_coding MGP_C3HHeJ_T0093571.1 MGP_C3HHeJ_G0034888.1 mouse_genomes_project 9 104873837 104877300 + Acad11 protein_coding retained_intron MGP_C3HHeJ_T0093572.1 MGP_C3HHeJ_G0034888.1 mouse_genomes_project 9 104887355 104890539 + Acad11 protein_coding processed_transcript MGP_C3HHeJ_T0011020.1 MGP_C3HHeJ_G0009153.1 mouse_genomes_project 9 122812019 122812081 + Mir7090 miRNA miRNA MGP_C3HHeJ_T0002418.1 MGP_C3HHeJ_G0002336.1 mouse_genomes_project 9 108610656 108611855 + TEC TEC MGP_C3HHeJ_T0015851.1 MGP_C3HHeJ_G0013955.1 mouse_genomes_project 9 71704414 71705123 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002316.1 MGP_C3HHeJ_G0002235.1 mouse_genomes_project 9 32429414 32454370 - TEC TEC MGP_C3HHeJ_T0098564.1 MGP_C3HHeJ_G0036763.1 mouse_genomes_project 9 116749223 116752643 + Gm27002 sense_intronic sense_intronic MGP_C3HHeJ_T0090727.1 MGP_C3HHeJ_G0034021.1 mouse_genomes_project 9 6061298 6321712 - MGP_C3HHeJ_P0090727 Arhgap42 protein_coding protein_coding MGP_C3HHeJ_T0090728.1 MGP_C3HHeJ_G0034021.1 mouse_genomes_project 9 6061541 6321390 - MGP_C3HHeJ_P0090728 Arhgap42 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090729.1 MGP_C3HHeJ_G0034021.1 mouse_genomes_project 9 6078211 6321712 - Arhgap42 protein_coding retained_intron MGP_C3HHeJ_T0090730.1 MGP_C3HHeJ_G0034021.1 mouse_genomes_project 9 6218513 6321637 - MGP_C3HHeJ_P0090730 Arhgap42 protein_coding protein_coding MGP_C3HHeJ_T0011002.1 MGP_C3HHeJ_G0009135.1 mouse_genomes_project 9 105819587 105819691 + Gm23391 miRNA miRNA MGP_C3HHeJ_T0094332.1 MGP_C3HHeJ_G0035006.1 mouse_genomes_project 9 110014224 110016026 - MGP_C3HHeJ_P0094332 Trex1 protein_coding protein_coding MGP_C3HHeJ_T0094334.1 MGP_C3HHeJ_G0035006.1 mouse_genomes_project 9 110014229 110015543 - MGP_C3HHeJ_P0094334 Trex1 protein_coding protein_coding MGP_C3HHeJ_T0015819.1 MGP_C3HHeJ_G0013923.1 mouse_genomes_project 9 20101678 20102191 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091991.1 MGP_C3HHeJ_G0034512.1 mouse_genomes_project 9 53699097 53718983 - MGP_C3HHeJ_P0091991 Wdr61 protein_coding protein_coding MGP_C3HHeJ_T0091992.1 MGP_C3HHeJ_G0034512.1 mouse_genomes_project 9 53701517 53719008 - MGP_C3HHeJ_P0091992 Wdr61 protein_coding protein_coding MGP_C3HHeJ_T0091993.1 MGP_C3HHeJ_G0034512.1 mouse_genomes_project 9 53703582 53705177 - Wdr61 protein_coding retained_intron MGP_C3HHeJ_T0091994.1 MGP_C3HHeJ_G0034512.1 mouse_genomes_project 9 53706887 53708720 - Wdr61 protein_coding retained_intron MGP_C3HHeJ_T0009152.1 MGP_C3HHeJ_G0007349.1 mouse_genomes_project 9 45041009 45044019 - 4930448E22Rik lincRNA lincRNA MGP_C3HHeJ_T0010967.1 MGP_C3HHeJ_G0009100.1 mouse_genomes_project 9 40087783 40087860 + Mir125b-1 miRNA miRNA MGP_C3HHeJ_T0092979.1 MGP_C3HHeJ_G0034764.1 mouse_genomes_project 9 83008485 83027779 + MGP_C3HHeJ_P0092979 Irak1bp1 protein_coding protein_coding MGP_C3HHeJ_T0092980.1 MGP_C3HHeJ_G0034764.1 mouse_genomes_project 9 83008751 83027112 + MGP_C3HHeJ_P0092980 Irak1bp1 protein_coding protein_coding MGP_C3HHeJ_T0091378.1 MGP_C3HHeJ_G0034263.1 mouse_genomes_project 9 36296217 36297147 + MGP_C3HHeJ_P0091378 Olfr883 protein_coding protein_coding MGP_C3HHeJ_T0091538.1 MGP_C3HHeJ_G0034366.1 mouse_genomes_project 9 41814047 41839137 + MGP_C3HHeJ_P0091538 protein_coding protein_coding MGP_C3HHeJ_T0091539.1 MGP_C3HHeJ_G0034366.1 mouse_genomes_project 9 41814084 41839135 + MGP_C3HHeJ_P0091539 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091139.1 MGP_C3HHeJ_G0034186.1 mouse_genomes_project 9 24773075 24799856 - MGP_C3HHeJ_P0091139 Vps26b protein_coding protein_coding MGP_C3HHeJ_T0002366.1 MGP_C3HHeJ_G0002284.1 mouse_genomes_project 9 87995118 87996947 - TEC TEC MGP_C3HHeJ_T0094864.1 MGP_C3HHeJ_G0035133.1 mouse_genomes_project 9 123640981 123647276 + MGP_C3HHeJ_P0094864 Klhl40 protein_coding protein_coding MGP_C3HHeJ_T0009244.1 MGP_C3HHeJ_G0007422.1 mouse_genomes_project 9 108522640 108525992 - Lsmem2 lincRNA lincRNA MGP_C3HHeJ_T0093852.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108479811 108490507 + MGP_C3HHeJ_P0093852 Rassf1 protein_coding protein_coding MGP_C3HHeJ_T0093853.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108479818 108482763 + Rassf1 protein_coding retained_intron MGP_C3HHeJ_T0093854.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108479823 108490503 + MGP_C3HHeJ_P0093854 Rassf1 protein_coding protein_coding MGP_C3HHeJ_T0093855.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108479846 108490503 + MGP_C3HHeJ_P0093855 Rassf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093856.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108482839 108490503 + MGP_C3HHeJ_P0093856 Rassf1 protein_coding protein_coding MGP_C3HHeJ_T0093857.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108483632 108486052 + Rassf1 protein_coding processed_transcript MGP_C3HHeJ_T0093858.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108484862 108490503 + Rassf1 protein_coding processed_transcript MGP_C3HHeJ_T0093859.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108484994 108490503 + Rassf1 protein_coding retained_intron MGP_C3HHeJ_T0093860.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108486186 108490071 + Rassf1 protein_coding retained_intron MGP_C3HHeJ_T0093861.1 MGP_C3HHeJ_G0034940.1 mouse_genomes_project 9 108486193 108488667 + Rassf1 protein_coding retained_intron MGP_C3HHeJ_T0002341.1 MGP_C3HHeJ_G0002260.1 mouse_genomes_project 9 72547109 72549869 + TEC TEC MGP_C3HHeJ_T0005488.1 MGP_C3HHeJ_G0004621.1 mouse_genomes_project 9 123435954 123452972 + Lyzl4os antisense antisense MGP_C3HHeJ_T0005489.1 MGP_C3HHeJ_G0004621.1 mouse_genomes_project 9 123435977 123466704 + Lyzl4os antisense antisense MGP_C3HHeJ_T0091671.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43563473 43607103 - MGP_C3HHeJ_P0091671 Ube4a protein_coding protein_coding MGP_C3HHeJ_T0091672.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43566190 43607143 - MGP_C3HHeJ_P0091672 Ube4a protein_coding protein_coding MGP_C3HHeJ_T0091673.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43573349 43607062 - MGP_C3HHeJ_P0091673 Ube4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091674.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43573449 43607068 - MGP_C3HHeJ_P0091674 Ube4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091675.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43586366 43607100 - Ube4a protein_coding retained_intron MGP_C3HHeJ_T0091676.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43593257 43607097 - MGP_C3HHeJ_P0091676 Ube4a protein_coding protein_coding MGP_C3HHeJ_T0091677.1 MGP_C3HHeJ_G0034406.1 mouse_genomes_project 9 43596590 43607079 - Ube4a protein_coding retained_intron MGP_C3HHeJ_T0091495.1 MGP_C3HHeJ_G0034350.1 mouse_genomes_project 9 39130443 39130845 + MGP_C3HHeJ_P0091495 Gm21915 protein_coding protein_coding MGP_C3HHeJ_T0091775.1 MGP_C3HHeJ_G0034437.1 mouse_genomes_project 9 45016829 45034641 - MGP_C3HHeJ_P0091775 4931429L15Rik protein_coding protein_coding MGP_C3HHeJ_T0091776.1 MGP_C3HHeJ_G0034437.1 mouse_genomes_project 9 45017486 45025770 - MGP_C3HHeJ_P0091776 4931429L15Rik protein_coding protein_coding MGP_C3HHeJ_T0091777.1 MGP_C3HHeJ_G0034437.1 mouse_genomes_project 9 45024481 45030123 - MGP_C3HHeJ_P0091777 4931429L15Rik protein_coding protein_coding MGP_C3HHeJ_T0091394.1 MGP_C3HHeJ_G0034278.1 mouse_genomes_project 9 36676325 36677418 + MGP_C3HHeJ_P0091394 Olfr251 protein_coding protein_coding MGP_C3HHeJ_T0093352.1 MGP_C3HHeJ_G0034839.1 mouse_genomes_project 9 99028276 99051858 + MGP_C3HHeJ_P0093352 Rbp2 protein_coding protein_coding MGP_C3HHeJ_T0093353.1 MGP_C3HHeJ_G0034839.1 mouse_genomes_project 9 99028327 99051741 + MGP_C3HHeJ_P0093353 Rbp2 protein_coding protein_coding MGP_C3HHeJ_T0093354.1 MGP_C3HHeJ_G0034839.1 mouse_genomes_project 9 99032697 99051848 + MGP_C3HHeJ_P0093354 Rbp2 protein_coding protein_coding MGP_C3HHeJ_T0093355.1 MGP_C3HHeJ_G0034839.1 mouse_genomes_project 9 99033857 99041041 + Rbp2 protein_coding processed_transcript MGP_C3HHeJ_T0092114.1 MGP_C3HHeJ_G0034548.1 mouse_genomes_project 9 56563924 56590627 - MGP_C3HHeJ_P0092114 Scamp5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0015848.1 MGP_C3HHeJ_G0013952.1 mouse_genomes_project 9 65428779 65429296 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002312.1 MGP_C3HHeJ_G0002231.1 mouse_genomes_project 9 30467970 30470606 - TEC TEC MGP_C3HHeJ_T0092771.1 MGP_C3HHeJ_G0034708.1 mouse_genomes_project 9 72941967 72943019 + MGP_C3HHeJ_P0092771 Khdc3 protein_coding protein_coding MGP_C3HHeJ_T0092772.1 MGP_C3HHeJ_G0034708.1 mouse_genomes_project 9 72942529 72944570 + MGP_C3HHeJ_P0092772 Khdc3 protein_coding protein_coding MGP_C3HHeJ_T0092773.1 MGP_C3HHeJ_G0034708.1 mouse_genomes_project 9 72942529 72944570 + MGP_C3HHeJ_P0092773 Khdc3 protein_coding protein_coding MGP_C3HHeJ_T0092775.1 MGP_C3HHeJ_G0034708.1 mouse_genomes_project 9 72942641 72944324 + MGP_C3HHeJ_P0092775 Khdc3 protein_coding protein_coding MGP_C3HHeJ_T0099737.1 MGP_C3HHeJ_G0037931.1 mouse_genomes_project 9 116382695 116382799 + Gm23889 snRNA snRNA MGP_C3HHeJ_T0092145.1 MGP_C3HHeJ_G0034563.1 mouse_genomes_project 9 57065007 57083986 + MGP_C3HHeJ_P0092145 Ubl7 protein_coding protein_coding MGP_C3HHeJ_T0005419.1 MGP_C3HHeJ_G0004572.1 mouse_genomes_project 9 95131971 95138584 - Gm16262 antisense antisense MGP_C3HHeJ_T0091081.1 MGP_C3HHeJ_G0034167.1 mouse_genomes_project 9 20031790 20065101 + MGP_C3HHeJ_P0091081 9530077C05Rik protein_coding protein_coding MGP_C3HHeJ_T0018284.1 MGP_C3HHeJ_G0015494.1 mouse_genomes_project 9 38755124 38775254 + 1700110K17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018285.1 MGP_C3HHeJ_G0015494.1 mouse_genomes_project 9 38765162 38775248 + 1700110K17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0097947.1 MGP_C3HHeJ_G0036159.1 mouse_genomes_project 9 36826957 36827890 + pseudogene pseudogene MGP_C3HHeJ_T0094393.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111127215 111308173 + MGP_C3HHeJ_P0094393 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094394.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111127555 111225971 + MGP_C3HHeJ_P0094394 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094395.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111127619 111308165 + MGP_C3HHeJ_P0094395 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094396.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111175210 111223513 + Map4 protein_coding processed_transcript MGP_C3HHeJ_T0094397.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111258230 111296491 + MGP_C3HHeJ_P0094397 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094398.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111273743 111308164 + MGP_C3HHeJ_P0094398 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094399.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111273747 111307391 + MGP_C3HHeJ_P0094399 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094400.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111273765 111308171 + MGP_C3HHeJ_P0094400 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094401.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111284996 111292538 + Map4 protein_coding processed_transcript MGP_C3HHeJ_T0094402.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111291369 111306305 + MGP_C3HHeJ_P0094402 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094403.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111291369 111306715 + MGP_C3HHeJ_P0094403 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094404.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111292609 111306013 + MGP_C3HHeJ_P0094404 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094405.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111292633 111306132 + MGP_C3HHeJ_P0094405 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094406.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111301828 111304253 + Map4 protein_coding retained_intron MGP_C3HHeJ_T0094407.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111302277 111306368 + MGP_C3HHeJ_P0094407 Map4 protein_coding protein_coding MGP_C3HHeJ_T0094408.1 MGP_C3HHeJ_G0035024.1 mouse_genomes_project 9 111304017 111306715 + MGP_C3HHeJ_P0094408 Map4 protein_coding protein_coding MGP_C3HHeJ_T0002332.1 MGP_C3HHeJ_G0002251.1 mouse_genomes_project 9 72114543 72116544 + TEC TEC MGP_C3HHeJ_T0091287.1 MGP_C3HHeJ_G0034233.1 mouse_genomes_project 9 34715602 34724093 - MGP_C3HHeJ_P0091287 Gm5615 protein_coding protein_coding MGP_C3HHeJ_T0094584.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112530438 112575325 - MGP_C3HHeJ_P0094584 Mlh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094585.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112530465 112575570 - MGP_C3HHeJ_P0094585 Mlh1 protein_coding protein_coding MGP_C3HHeJ_T0094586.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112530742 112532847 - Mlh1 protein_coding retained_intron MGP_C3HHeJ_T0094587.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112532080 112533159 - Mlh1 protein_coding retained_intron MGP_C3HHeJ_T0094588.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112532098 112575379 - Mlh1 protein_coding retained_intron MGP_C3HHeJ_T0094589.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112543489 112550732 - Mlh1 protein_coding retained_intron MGP_C3HHeJ_T0094590.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112543775 112560806 - MGP_C3HHeJ_P0094590 Mlh1 protein_coding protein_coding MGP_C3HHeJ_T0094591.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112552209 112564849 - MGP_C3HHeJ_P0094591 Mlh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094592.1 MGP_C3HHeJ_G0035055.1 mouse_genomes_project 9 112560502 112575313 - Mlh1 protein_coding processed_transcript MGP_C3HHeJ_T0094667.1 MGP_C3HHeJ_G0035074.1 mouse_genomes_project 9 116045485 116046213 + MGP_C3HHeJ_P0094667 protein_coding protein_coding MGP_C3HHeJ_T0091735.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44643693 44660798 - MGP_C3HHeJ_P0091735 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091736.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44643711 44660528 - MGP_C3HHeJ_P0091736 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091737.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44645141 44647133 - MGP_C3HHeJ_P0091737 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091738.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44648070 44650180 - Sidt2 protein_coding retained_intron MGP_C3HHeJ_T0091739.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44648498 44650582 - Sidt2 protein_coding retained_intron MGP_C3HHeJ_T0091740.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44649320 44652336 - MGP_C3HHeJ_P0091740 Sidt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091741.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44649922 44653340 - Sidt2 protein_coding retained_intron MGP_C3HHeJ_T0091742.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44650751 44653804 - MGP_C3HHeJ_P0091742 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091743.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44650839 44660732 - MGP_C3HHeJ_P0091743 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091744.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44650901 44657382 - MGP_C3HHeJ_P0091744 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091745.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44651217 44657323 - MGP_C3HHeJ_P0091745 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091746.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44651254 44657555 - MGP_C3HHeJ_P0091746 Sidt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091747.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44651289 44653856 - MGP_C3HHeJ_P0091747 Sidt2 protein_coding protein_coding MGP_C3HHeJ_T0091748.1 MGP_C3HHeJ_G0034428.1 mouse_genomes_project 9 44657991 44660785 - Sidt2 protein_coding retained_intron MGP_C3HHeJ_T0002340.1 MGP_C3HHeJ_G0002259.1 mouse_genomes_project 9 72535892 72536102 + TEC TEC MGP_C3HHeJ_T0091883.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49664470 49735876 + MGP_C3HHeJ_P0091883 Alg9 protein_coding protein_coding MGP_C3HHeJ_T0091884.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49664756 49735890 + MGP_C3HHeJ_P0091884 Alg9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091885.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49664818 49679008 + MGP_C3HHeJ_P0091885 Alg9 protein_coding protein_coding MGP_C3HHeJ_T0091886.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49665000 49672798 + Alg9 protein_coding processed_transcript MGP_C3HHeJ_T0091887.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49665562 49668536 + Alg9 protein_coding processed_transcript MGP_C3HHeJ_T0091888.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49691382 49735111 + MGP_C3HHeJ_P0091888 Alg9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091889.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49698938 49735710 + MGP_C3HHeJ_P0091889 Alg9 protein_coding protein_coding MGP_C3HHeJ_T0091890.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49712982 49735319 + Alg9 protein_coding processed_transcript MGP_C3HHeJ_T0091891.1 MGP_C3HHeJ_G0034475.1 mouse_genomes_project 9 49727936 49735439 + Alg9 protein_coding processed_transcript MGP_C3HHeJ_T0092592.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69715058 69733815 + MGP_C3HHeJ_P0092592 Bnip2 protein_coding protein_coding MGP_C3HHeJ_T0092593.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69715096 69733753 + MGP_C3HHeJ_P0092593 Bnip2 protein_coding protein_coding MGP_C3HHeJ_T0092594.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69715107 69729506 + MGP_C3HHeJ_P0092594 Bnip2 protein_coding protein_coding MGP_C3HHeJ_T0092595.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69715109 69724660 + MGP_C3HHeJ_P0092595 Bnip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092596.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69721009 69732613 + MGP_C3HHeJ_P0092596 Bnip2 protein_coding protein_coding MGP_C3HHeJ_T0092597.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69722677 69727738 + Bnip2 protein_coding retained_intron MGP_C3HHeJ_T0092598.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69723733 69729136 + Bnip2 protein_coding processed_transcript MGP_C3HHeJ_T0092599.1 MGP_C3HHeJ_G0034676.1 mouse_genomes_project 9 69728877 69730262 + MGP_C3HHeJ_P0092599 Bnip2 protein_coding protein_coding MGP_C3HHeJ_T0099714.1 MGP_C3HHeJ_G0037908.1 mouse_genomes_project 9 75873829 75873913 - Gm25300 snRNA snRNA MGP_C3HHeJ_T0091268.1 MGP_C3HHeJ_G0034219.1 mouse_genomes_project 9 33574650 33584225 - MGP_C3HHeJ_P0091268 Hyls1 protein_coding protein_coding MGP_C3HHeJ_T0091269.1 MGP_C3HHeJ_G0034219.1 mouse_genomes_project 9 33578284 33583924 - Hyls1 protein_coding retained_intron MGP_C3HHeJ_T0091795.1 MGP_C3HHeJ_G0034443.1 mouse_genomes_project 9 47255603 47267671 - MGP_C3HHeJ_P0091795 Rexo2 protein_coding protein_coding MGP_C3HHeJ_T0091803.1 MGP_C3HHeJ_G0034447.1 mouse_genomes_project 9 47442602 47634526 - MGP_C3HHeJ_P0091803 Zbtb16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091804.1 MGP_C3HHeJ_G0034447.1 mouse_genomes_project 9 47445051 47634309 - MGP_C3HHeJ_P0091804 Zbtb16 protein_coding protein_coding MGP_C3HHeJ_T0094867.1 MGP_C3HHeJ_G0035135.1 mouse_genomes_project 9 123662110 123710274 - MGP_C3HHeJ_P0094867 Ccdc13 protein_coding protein_coding MGP_C3HHeJ_T0094868.1 MGP_C3HHeJ_G0035135.1 mouse_genomes_project 9 123662116 123679098 - MGP_C3HHeJ_P0094868 Ccdc13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094869.1 MGP_C3HHeJ_G0035135.1 mouse_genomes_project 9 123662651 123679244 - Ccdc13 protein_coding retained_intron MGP_C3HHeJ_T0094870.1 MGP_C3HHeJ_G0035135.1 mouse_genomes_project 9 123667514 123679080 - MGP_C3HHeJ_P0094870 Ccdc13 protein_coding protein_coding MGP_C3HHeJ_T0094871.1 MGP_C3HHeJ_G0035135.1 mouse_genomes_project 9 123668025 123679183 - Ccdc13 protein_coding retained_intron MGP_C3HHeJ_T0094872.1 MGP_C3HHeJ_G0035135.1 mouse_genomes_project 9 123686313 123700062 - Ccdc13 protein_coding retained_intron MGP_C3HHeJ_T0101010.1 MGP_C3HHeJ_G0039204.1 mouse_genomes_project 9 121056828 121056957 - Gm22729 snoRNA snoRNA MGP_C3HHeJ_T0100988.1 MGP_C3HHeJ_G0039182.1 mouse_genomes_project 9 85691132 85691268 + Gm25125 snoRNA snoRNA MGP_C3HHeJ_T0094346.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110056004 110081365 + MGP_C3HHeJ_P0094346 Plxnb1 protein_coding protein_coding MGP_C3HHeJ_T0094347.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110057410 110061958 + MGP_C3HHeJ_P0094347 Plxnb1 protein_coding protein_coding MGP_C3HHeJ_T0094348.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110058168 110061958 + MGP_C3HHeJ_P0094348 Plxnb1 protein_coding protein_coding MGP_C3HHeJ_T0094349.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110066429 110070326 + MGP_C3HHeJ_P0094349 Plxnb1 protein_coding protein_coding MGP_C3HHeJ_T0094350.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110066978 110068285 + Plxnb1 protein_coding retained_intron MGP_C3HHeJ_T0094351.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110067440 110068409 + Plxnb1 protein_coding retained_intron MGP_C3HHeJ_T0094352.1 MGP_C3HHeJ_G0035010.1 mouse_genomes_project 9 110068271 110070355 + Plxnb1 protein_coding retained_intron MGP_C3HHeJ_T0009226.1 MGP_C3HHeJ_G0007406.1 mouse_genomes_project 9 98729624 98730251 - 2610303G11Rik lincRNA lincRNA MGP_C3HHeJ_T0091431.1 MGP_C3HHeJ_G0034309.1 mouse_genomes_project 9 37478740 37479726 + MGP_C3HHeJ_P0091431 Olfr27 protein_coding protein_coding MGP_C3HHeJ_T0094897.1 MGP_C3HHeJ_G0035146.1 mouse_genomes_project 9 124681279 124717308 + MGP_C3HHeJ_P0094897 Tcaim protein_coding protein_coding MGP_C3HHeJ_T0094898.1 MGP_C3HHeJ_G0035146.1 mouse_genomes_project 9 124681301 124687602 + Tcaim protein_coding processed_transcript MGP_C3HHeJ_T0094899.1 MGP_C3HHeJ_G0035146.1 mouse_genomes_project 9 124681336 124717301 + MGP_C3HHeJ_P0094899 Tcaim protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092916.1 MGP_C3HHeJ_G0034749.1 mouse_genomes_project 9 78497146 78524887 + MGP_C3HHeJ_P0092916 Ddx43 protein_coding protein_coding MGP_C3HHeJ_T0002402.1 MGP_C3HHeJ_G0002320.1 mouse_genomes_project 9 102890061 102894430 + TEC TEC MGP_C3HHeJ_T0009131.1 MGP_C3HHeJ_G0007330.1 mouse_genomes_project 9 24972092 24973601 - lincRNA lincRNA MGP_C3HHeJ_T0010960.1 MGP_C3HHeJ_G0009093.1 mouse_genomes_project 9 19700019 19700089 - Mir7084 miRNA miRNA MGP_C3HHeJ_T0091471.1 MGP_C3HHeJ_G0034343.1 mouse_genomes_project 9 38514871 38515816 - MGP_C3HHeJ_P0091471 Olfr984 protein_coding protein_coding MGP_C3HHeJ_T0009172.1 MGP_C3HHeJ_G0007365.1 mouse_genomes_project 9 67440751 67442248 - M5C1000I18Rik lincRNA lincRNA MGP_C3HHeJ_T0009173.1 MGP_C3HHeJ_G0007365.1 mouse_genomes_project 9 67440752 67442270 - M5C1000I18Rik lincRNA lincRNA MGP_C3HHeJ_T0009174.1 MGP_C3HHeJ_G0007365.1 mouse_genomes_project 9 67440752 67442248 - M5C1000I18Rik lincRNA lincRNA MGP_C3HHeJ_T0015957.1 MGP_C3HHeJ_G0014061.1 mouse_genomes_project 9 123082904 123083254 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091980.1 MGP_C3HHeJ_G0034508.1 mouse_genomes_project 9 53520017 53539270 - MGP_C3HHeJ_P0091980 Cib2 protein_coding protein_coding MGP_C3HHeJ_T0090938.1 MGP_C3HHeJ_G0034106.1 mouse_genomes_project 9 18161700 18225101 - MGP_C3HHeJ_P0090938 Olfm2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090939.1 MGP_C3HHeJ_G0034106.1 mouse_genomes_project 9 18161998 18228062 - MGP_C3HHeJ_P0090939 Olfm2 protein_coding protein_coding MGP_C3HHeJ_T0009183.1 MGP_C3HHeJ_G0007373.1 mouse_genomes_project 9 73040345 73116710 + Gm27211 lincRNA lincRNA MGP_C3HHeJ_T0002311.1 MGP_C3HHeJ_G0002230.1 mouse_genomes_project 9 30435716 30438757 - TEC TEC MGP_C3HHeJ_T0099676.1 MGP_C3HHeJ_G0037870.1 mouse_genomes_project 9 16026094 16026196 + Gm24546 snRNA snRNA MGP_C3HHeJ_T0094170.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109474073 109483206 + MGP_C3HHeJ_P0094170 Qars protein_coding protein_coding MGP_C3HHeJ_T0094171.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109474418 109478352 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094172.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109474418 109479463 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094173.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109474418 109478336 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094174.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109474431 109483201 + MGP_C3HHeJ_P0094174 Qars protein_coding protein_coding MGP_C3HHeJ_T0094175.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109475839 109483201 + MGP_C3HHeJ_P0094175 Qars protein_coding protein_coding MGP_C3HHeJ_T0094176.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109478814 109480662 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094177.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109478874 109480156 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094178.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109480370 109481451 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094179.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109480373 109482423 + MGP_C3HHeJ_P0094179 Qars protein_coding protein_coding MGP_C3HHeJ_T0094180.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109480394 109481228 + Qars protein_coding processed_transcript MGP_C3HHeJ_T0094181.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109480808 109481395 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094182.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109480990 109481623 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094183.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109481328 109483201 + MGP_C3HHeJ_P0094183 Qars protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094184.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109482012 109482460 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094185.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109482015 109483194 + Qars protein_coding retained_intron MGP_C3HHeJ_T0094186.1 MGP_C3HHeJ_G0034985.1 mouse_genomes_project 9 109482083 109483201 + Qars protein_coding retained_intron MGP_C3HHeJ_T0015882.1 MGP_C3HHeJ_G0013986.1 mouse_genomes_project 9 82375043 82375794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092182.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57407269 57440529 - MGP_C3HHeJ_P0092182 Pml protein_coding protein_coding MGP_C3HHeJ_T0092183.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57407269 57440529 - MGP_C3HHeJ_P0092183 Pml protein_coding protein_coding MGP_C3HHeJ_T0092184.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57407279 57440476 - MGP_C3HHeJ_P0092184 Pml protein_coding protein_coding MGP_C3HHeJ_T0092185.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57407280 57440408 - MGP_C3HHeJ_P0092185 Pml protein_coding protein_coding MGP_C3HHeJ_T0092186.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57407735 57423498 - Pml protein_coding retained_intron MGP_C3HHeJ_T0092187.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57408944 57440403 - MGP_C3HHeJ_P0092187 Pml protein_coding protein_coding MGP_C3HHeJ_T0092188.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57409456 57420240 - Pml protein_coding processed_transcript MGP_C3HHeJ_T0092189.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57410249 57440529 - MGP_C3HHeJ_P0092189 Pml protein_coding protein_coding MGP_C3HHeJ_T0092190.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57419960 57440529 - MGP_C3HHeJ_P0092190 Pml protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092191.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57420503 57423508 - Pml protein_coding retained_intron MGP_C3HHeJ_T0092192.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57437841 57440366 - MGP_C3HHeJ_P0092192 Pml protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092193.1 MGP_C3HHeJ_G0034570.1 mouse_genomes_project 9 57437886 57440529 - MGP_C3HHeJ_P0092193 Pml protein_coding protein_coding MGP_C3HHeJ_T0090806.1 MGP_C3HHeJ_G0034044.1 mouse_genomes_project 9 12487025 12508719 + MGP_C3HHeJ_P0090806 Vstm5 protein_coding protein_coding MGP_C3HHeJ_T0091962.1 MGP_C3HHeJ_G0034500.1 mouse_genomes_project 9 52820811 52824405 + MGP_C3HHeJ_P0091962 Sln protein_coding protein_coding MGP_C3HHeJ_T0093761.1 MGP_C3HHeJ_G0034923.1 mouse_genomes_project 9 107532325 107533419 + MGP_C3HHeJ_P0093761 Iqcf6 protein_coding protein_coding MGP_C3HHeJ_T0091403.1 MGP_C3HHeJ_G0034287.1 mouse_genomes_project 9 36913248 36915534 + MGP_C3HHeJ_P0091403 Olfr913 protein_coding protein_coding MGP_C3HHeJ_T0015897.1 MGP_C3HHeJ_G0014001.1 mouse_genomes_project 9 88528363 88529185 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002393.1 MGP_C3HHeJ_G0002311.1 mouse_genomes_project 9 101781124 101782726 + TEC TEC MGP_C3HHeJ_T0091451.1 MGP_C3HHeJ_G0034323.1 mouse_genomes_project 9 38016848 38017797 + MGP_C3HHeJ_P0091451 Olfr961 protein_coding protein_coding MGP_C3HHeJ_T0099727.1 MGP_C3HHeJ_G0037921.1 mouse_genomes_project 9 103086642 103086745 + Gm22894 snRNA snRNA MGP_C3HHeJ_T0093782.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107759223 107812693 - MGP_C3HHeJ_P0093782 Manf protein_coding protein_coding MGP_C3HHeJ_T0093784.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107790765 107811105 - MGP_C3HHeJ_P0093784 Manf protein_coding protein_coding MGP_C3HHeJ_T0093788.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107808237 107812800 - MGP_C3HHeJ_P0093788 Manf protein_coding protein_coding MGP_C3HHeJ_T0093789.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107809575 107812236 - MGP_C3HHeJ_P0093789 Manf protein_coding protein_coding MGP_C3HHeJ_T0093790.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107809906 107812691 - MGP_C3HHeJ_P0093790 Manf protein_coding protein_coding MGP_C3HHeJ_T0093791.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107810852 107812736 - Manf protein_coding retained_intron MGP_C3HHeJ_T0093792.1 MGP_C3HHeJ_G0034928.1 mouse_genomes_project 9 107811384 107812738 - Manf protein_coding retained_intron MGP_C3HHeJ_T0093212.1 MGP_C3HHeJ_G0034811.1 mouse_genomes_project 9 92665341 92671816 + MGP_C3HHeJ_P0093212 Plscr2 protein_coding protein_coding MGP_C3HHeJ_T0093213.1 MGP_C3HHeJ_G0034811.1 mouse_genomes_project 9 92665594 92688621 + MGP_C3HHeJ_P0093213 Plscr2 protein_coding protein_coding MGP_C3HHeJ_T0093214.1 MGP_C3HHeJ_G0034811.1 mouse_genomes_project 9 92680969 92682656 + Plscr2 protein_coding retained_intron MGP_C3HHeJ_T0098215.1 MGP_C3HHeJ_G0036427.1 mouse_genomes_project 9 117211749 117211868 - n-R5s92 rRNA rRNA MGP_C3HHeJ_T0009179.1 MGP_C3HHeJ_G0007369.1 mouse_genomes_project 9 72004265 72026789 - Gm27188 lincRNA lincRNA MGP_C3HHeJ_T0009269.1 MGP_C3HHeJ_G0007440.1 mouse_genomes_project 9 124448740 124556060 + 9530059O14Rik lincRNA lincRNA MGP_C3HHeJ_T0009270.1 MGP_C3HHeJ_G0007440.1 mouse_genomes_project 9 124448744 124460056 + 9530059O14Rik lincRNA lincRNA MGP_C3HHeJ_T0009271.1 MGP_C3HHeJ_G0007440.1 mouse_genomes_project 9 124448745 124556691 + 9530059O14Rik lincRNA lincRNA MGP_C3HHeJ_T0002396.1 MGP_C3HHeJ_G0002314.1 mouse_genomes_project 9 101839413 101841297 + TEC TEC MGP_C3HHeJ_T0091191.1 MGP_C3HHeJ_G0034201.1 mouse_genomes_project 9 29337287 29376870 - MGP_C3HHeJ_P0091191 Tmem45b protein_coding protein_coding MGP_C3HHeJ_T0018338.1 MGP_C3HHeJ_G0015513.1 mouse_genomes_project 9 97263224 97271994 + C430002N11Rik processed_transcript retained_intron MGP_C3HHeJ_T0018339.1 MGP_C3HHeJ_G0015513.1 mouse_genomes_project 9 97263237 97281482 + C430002N11Rik processed_transcript lincRNA MGP_C3HHeJ_T0018340.1 MGP_C3HHeJ_G0015513.1 mouse_genomes_project 9 97263237 97272789 + C430002N11Rik processed_transcript retained_intron MGP_C3HHeJ_T0018341.1 MGP_C3HHeJ_G0015513.1 mouse_genomes_project 9 97263247 97272006 + C430002N11Rik processed_transcript retained_intron MGP_C3HHeJ_T0018342.1 MGP_C3HHeJ_G0015513.1 mouse_genomes_project 9 97263263 97271685 + C430002N11Rik processed_transcript lincRNA MGP_C3HHeJ_T0091018.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19089268 19140707 + MGP_C3HHeJ_P0091018 Carm1 protein_coding protein_coding MGP_C3HHeJ_T0091019.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19089268 19140726 + MGP_C3HHeJ_P0091019 Carm1 protein_coding protein_coding MGP_C3HHeJ_T0091020.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19089268 19140706 + MGP_C3HHeJ_P0091020 Carm1 protein_coding protein_coding MGP_C3HHeJ_T0091021.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19089333 19140706 + Carm1 protein_coding retained_intron MGP_C3HHeJ_T0091022.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19089333 19140706 + MGP_C3HHeJ_P0091022 Carm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091023.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19089460 19130704 + Carm1 protein_coding processed_transcript MGP_C3HHeJ_T0091024.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19126340 19131576 + Carm1 protein_coding processed_transcript MGP_C3HHeJ_T0091025.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19138456 19139439 + Carm1 protein_coding processed_transcript MGP_C3HHeJ_T0091026.1 MGP_C3HHeJ_G0034137.1 mouse_genomes_project 9 19138641 19139368 + Carm1 protein_coding processed_transcript MGP_C3HHeJ_T0092014.1 MGP_C3HHeJ_G0034521.1 mouse_genomes_project 9 54150959 54210175 + MGP_C3HHeJ_P0092014 Ube2q2 protein_coding protein_coding MGP_C3HHeJ_T0092015.1 MGP_C3HHeJ_G0034521.1 mouse_genomes_project 9 54151199 54211310 + MGP_C3HHeJ_P0092015 Ube2q2 protein_coding protein_coding MGP_C3HHeJ_T0092016.1 MGP_C3HHeJ_G0034521.1 mouse_genomes_project 9 54195731 54209924 + Ube2q2 protein_coding retained_intron MGP_C3HHeJ_T0094264.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109827739 109854368 + MGP_C3HHeJ_P0094264 Celsr3 protein_coding protein_coding MGP_C3HHeJ_T0094265.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109828537 109854375 + MGP_C3HHeJ_P0094265 Celsr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094266.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109833159 109834240 + MGP_C3HHeJ_P0094266 Celsr3 protein_coding protein_coding MGP_C3HHeJ_T0094267.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109835891 109837994 + Celsr3 protein_coding retained_intron MGP_C3HHeJ_T0094268.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109844018 109844635 + Celsr3 protein_coding retained_intron MGP_C3HHeJ_T0094269.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109844644 109845330 + Celsr3 protein_coding retained_intron MGP_C3HHeJ_T0094270.1 MGP_C3HHeJ_G0034997.1 mouse_genomes_project 9 109844662 109850147 + MGP_C3HHeJ_P0094270 Celsr3 protein_coding protein_coding MGP_C3HHeJ_T0091463.1 MGP_C3HHeJ_G0034335.1 mouse_genomes_project 9 38341686 38342619 - MGP_C3HHeJ_P0091463 Olfr975 protein_coding protein_coding MGP_C3HHeJ_T0002427.1 MGP_C3HHeJ_G0002345.1 mouse_genomes_project 9 110611584 110820127 + TEC TEC MGP_C3HHeJ_T0094654.1 MGP_C3HHeJ_G0035066.1 mouse_genomes_project 9 115396810 115456676 - MGP_C3HHeJ_P0094654 Fbxl2 protein_coding protein_coding MGP_C3HHeJ_T0094655.1 MGP_C3HHeJ_G0035066.1 mouse_genomes_project 9 115409871 115456708 - MGP_C3HHeJ_P0094655 Fbxl2 protein_coding protein_coding MGP_C3HHeJ_T0094656.1 MGP_C3HHeJ_G0035066.1 mouse_genomes_project 9 115411536 115456673 - MGP_C3HHeJ_P0094656 Fbxl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094657.1 MGP_C3HHeJ_G0035066.1 mouse_genomes_project 9 115416838 115424670 - Fbxl2 protein_coding retained_intron MGP_C3HHeJ_T0094658.1 MGP_C3HHeJ_G0035066.1 mouse_genomes_project 9 115422558 115456721 - Fbxl2 protein_coding retained_intron MGP_C3HHeJ_T0094659.1 MGP_C3HHeJ_G0035066.1 mouse_genomes_project 9 115435352 115487799 - Fbxl2 protein_coding processed_transcript MGP_C3HHeJ_T0011652.1 MGP_C3HHeJ_G0009785.1 mouse_genomes_project 9 111334036 111334164 - Gm27855 misc_RNA misc_RNA MGP_C3HHeJ_T0092817.1 MGP_C3HHeJ_G0034717.1 mouse_genomes_project 9 75101942 75176958 + MGP_C3HHeJ_P0092817 Myo5c protein_coding protein_coding MGP_C3HHeJ_T0091589.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42873899 42879324 - Abcg4 protein_coding retained_intron MGP_C3HHeJ_T0091590.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42873899 42891930 - MGP_C3HHeJ_P0091590 Abcg4 protein_coding protein_coding MGP_C3HHeJ_T0091591.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42873901 42892998 - MGP_C3HHeJ_P0091591 Abcg4 protein_coding protein_coding MGP_C3HHeJ_T0091592.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42875163 42880548 - Abcg4 protein_coding retained_intron MGP_C3HHeJ_T0091593.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42875806 42880310 - MGP_C3HHeJ_P0091593 Abcg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091594.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42877780 42891922 - Abcg4 protein_coding processed_transcript MGP_C3HHeJ_T0091595.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42878212 42880501 - Abcg4 protein_coding retained_intron MGP_C3HHeJ_T0091596.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42881357 42882368 - Abcg4 protein_coding retained_intron MGP_C3HHeJ_T0091597.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42882555 42892740 - MGP_C3HHeJ_P0091597 Abcg4 protein_coding protein_coding MGP_C3HHeJ_T0091598.1 MGP_C3HHeJ_G0034381.1 mouse_genomes_project 9 42882618 42892521 - MGP_C3HHeJ_P0091598 Abcg4 protein_coding protein_coding MGP_C3HHeJ_T0009138.1 MGP_C3HHeJ_G0007337.1 mouse_genomes_project 9 32595754 32596533 - Gm26662 lincRNA lincRNA MGP_C3HHeJ_T0091474.1 MGP_C3HHeJ_G0034346.1 mouse_genomes_project 9 38615495 38616511 + MGP_C3HHeJ_P0091474 Olfr986 protein_coding protein_coding MGP_C3HHeJ_T0093525.1 MGP_C3HHeJ_G0034880.1 mouse_genomes_project 9 103982118 104020564 - MGP_C3HHeJ_P0093525 1300017J02Rik protein_coding protein_coding MGP_C3HHeJ_T0093526.1 MGP_C3HHeJ_G0034880.1 mouse_genomes_project 9 103982119 103989000 - 1300017J02Rik protein_coding retained_intron MGP_C3HHeJ_T0093527.1 MGP_C3HHeJ_G0034880.1 mouse_genomes_project 9 103982221 104020491 - MGP_C3HHeJ_P0093527 1300017J02Rik protein_coding protein_coding MGP_C3HHeJ_T0093528.1 MGP_C3HHeJ_G0034880.1 mouse_genomes_project 9 103983434 103998400 - MGP_C3HHeJ_P0093528 1300017J02Rik protein_coding protein_coding MGP_C3HHeJ_T0093529.1 MGP_C3HHeJ_G0034880.1 mouse_genomes_project 9 104002905 104020564 - 1300017J02Rik protein_coding processed_transcript MGP_C3HHeJ_T0093530.1 MGP_C3HHeJ_G0034880.1 mouse_genomes_project 9 104015198 104034211 - MGP_C3HHeJ_P0093530 1300017J02Rik protein_coding protein_coding MGP_C3HHeJ_T0099694.1 MGP_C3HHeJ_G0037888.1 mouse_genomes_project 9 51693927 51694045 + Gm22242 snRNA snRNA MGP_C3HHeJ_T0100964.1 MGP_C3HHeJ_G0039158.1 mouse_genomes_project 9 39283909 39283999 + Snord14e snoRNA snoRNA MGP_C3HHeJ_T0092134.1 MGP_C3HHeJ_G0034561.1 mouse_genomes_project 9 56895612 56911112 - MGP_C3HHeJ_P0092134 Clk3 protein_coding protein_coding MGP_C3HHeJ_T0099678.1 MGP_C3HHeJ_G0037872.1 mouse_genomes_project 9 17686448 17686593 - Gm26290 snRNA snRNA MGP_C3HHeJ_T0091039.1 MGP_C3HHeJ_G0034145.1 mouse_genomes_project 9 19400711 19402548 + MGP_C3HHeJ_P0091039 Angptl8 protein_coding protein_coding MGP_C3HHeJ_T0010975.1 MGP_C3HHeJ_G0009108.1 mouse_genomes_project 9 50003546 50003623 - Mir34c miRNA miRNA MGP_C3HHeJ_T0094556.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112307054 112330734 + MGP_C3HHeJ_P0094556 Ltf protein_coding protein_coding MGP_C3HHeJ_T0094557.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112307075 112333008 + MGP_C3HHeJ_P0094557 Ltf protein_coding protein_coding MGP_C3HHeJ_T0094558.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112307075 112310913 + MGP_C3HHeJ_P0094558 Ltf protein_coding protein_coding MGP_C3HHeJ_T0094559.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112307075 112330734 + MGP_C3HHeJ_P0094559 Ltf protein_coding protein_coding MGP_C3HHeJ_T0094560.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112307093 112313458 + MGP_C3HHeJ_P0094560 Ltf protein_coding protein_coding MGP_C3HHeJ_T0094561.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112310865 112315866 + MGP_C3HHeJ_P0094561 Ltf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094562.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112312835 112313953 + Ltf protein_coding retained_intron MGP_C3HHeJ_T0094563.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112315567 112316939 + Ltf protein_coding retained_intron MGP_C3HHeJ_T0094564.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112315805 112326047 + MGP_C3HHeJ_P0094564 Ltf protein_coding protein_coding MGP_C3HHeJ_T0094565.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112320494 112330718 + MGP_C3HHeJ_P0094565 Ltf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094566.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112325877 112330718 + Ltf protein_coding retained_intron MGP_C3HHeJ_T0094567.1 MGP_C3HHeJ_G0035052.1 mouse_genomes_project 9 112329045 112332567 + MGP_C3HHeJ_P0094567 Ltf protein_coding protein_coding MGP_C3HHeJ_T0005490.1 MGP_C3HHeJ_G0004622.1 mouse_genomes_project 9 123689257 123700176 + Gm17163 antisense antisense MGP_C3HHeJ_T0094364.1 MGP_C3HHeJ_G0035017.1 mouse_genomes_project 9 110636159 110654125 - MGP_C3HHeJ_P0094364 Fbxw15 protein_coding protein_coding MGP_C3HHeJ_T0094365.1 MGP_C3HHeJ_G0035017.1 mouse_genomes_project 9 110636166 110654113 - MGP_C3HHeJ_P0094365 Fbxw15 protein_coding protein_coding MGP_C3HHeJ_T0094366.1 MGP_C3HHeJ_G0035017.1 mouse_genomes_project 9 110640716 110654111 - MGP_C3HHeJ_P0094366 Fbxw15 protein_coding protein_coding MGP_C3HHeJ_T0094775.1 MGP_C3HHeJ_G0035108.1 mouse_genomes_project 9 121525580 121603751 - MGP_C3HHeJ_P0094775 Scn11a protein_coding protein_coding MGP_C3HHeJ_T0093277.1 MGP_C3HHeJ_G0034825.1 mouse_genomes_project 9 96598824 96665900 + MGP_C3HHeJ_P0093277 Gk5 protein_coding protein_coding MGP_C3HHeJ_T0093278.1 MGP_C3HHeJ_G0034825.1 mouse_genomes_project 9 96598837 96670318 + MGP_C3HHeJ_P0093278 Gk5 protein_coding protein_coding MGP_C3HHeJ_T0093279.1 MGP_C3HHeJ_G0034825.1 mouse_genomes_project 9 96598894 96668520 + MGP_C3HHeJ_P0093279 Gk5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093280.1 MGP_C3HHeJ_G0034825.1 mouse_genomes_project 9 96606301 96622407 + Gk5 protein_coding processed_transcript MGP_C3HHeJ_T0093281.1 MGP_C3HHeJ_G0034825.1 mouse_genomes_project 9 96656626 96659175 + Gk5 protein_coding retained_intron MGP_C3HHeJ_T0100974.1 MGP_C3HHeJ_G0039168.1 mouse_genomes_project 9 63654217 63654287 + Gm22571 snoRNA snoRNA MGP_C3HHeJ_T0011019.1 MGP_C3HHeJ_G0009152.1 mouse_genomes_project 9 120752449 120752539 + Mir26a-1 miRNA miRNA MGP_C3HHeJ_T0100970.1 MGP_C3HHeJ_G0039164.1 mouse_genomes_project 9 52597150 52597279 + Gm22304 snoRNA snoRNA MGP_C3HHeJ_T0090789.1 MGP_C3HHeJ_G0034039.1 mouse_genomes_project 9 11992511 12046217 + MGP_C3HHeJ_P0090789 Mre11a protein_coding protein_coding MGP_C3HHeJ_T0090790.1 MGP_C3HHeJ_G0034039.1 mouse_genomes_project 9 11992533 12048694 + MGP_C3HHeJ_P0090790 Mre11a protein_coding protein_coding MGP_C3HHeJ_T0090791.1 MGP_C3HHeJ_G0034039.1 mouse_genomes_project 9 11992559 12008037 + MGP_C3HHeJ_P0090791 Mre11a protein_coding protein_coding MGP_C3HHeJ_T0090792.1 MGP_C3HHeJ_G0034039.1 mouse_genomes_project 9 12005572 12020018 + MGP_C3HHeJ_P0090792 Mre11a protein_coding protein_coding MGP_C3HHeJ_T0090793.1 MGP_C3HHeJ_G0034039.1 mouse_genomes_project 9 12005585 12012252 + MGP_C3HHeJ_P0090793 Mre11a protein_coding protein_coding MGP_C3HHeJ_T0018324.1 MGP_C3HHeJ_G0015506.1 mouse_genomes_project 9 77563763 77565272 + Gm19569 processed_transcript lincRNA MGP_C3HHeJ_T0018325.1 MGP_C3HHeJ_G0015506.1 mouse_genomes_project 9 77564006 77565272 + Gm19569 processed_transcript retained_intron MGP_C3HHeJ_T0100966.1 MGP_C3HHeJ_G0039160.1 mouse_genomes_project 9 43004109 43004228 - Gm26306 snoRNA snoRNA MGP_C3HHeJ_T0091605.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42987812 43000655 + MGP_C3HHeJ_P0091605 Hyou1 protein_coding protein_coding MGP_C3HHeJ_T0091606.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42987868 42999813 + MGP_C3HHeJ_P0091606 Hyou1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091607.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42987879 42999026 + Hyou1 protein_coding retained_intron MGP_C3HHeJ_T0091608.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42987895 43000649 + MGP_C3HHeJ_P0091608 Hyou1 protein_coding protein_coding MGP_C3HHeJ_T0091609.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42987906 42994397 + Hyou1 protein_coding retained_intron MGP_C3HHeJ_T0091610.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42987945 42999392 + MGP_C3HHeJ_P0091610 Hyou1 protein_coding protein_coding MGP_C3HHeJ_T0091611.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42988851 42992474 + MGP_C3HHeJ_P0091611 Hyou1 protein_coding protein_coding MGP_C3HHeJ_T0091612.1 MGP_C3HHeJ_G0034388.1 mouse_genomes_project 9 42998950 42999602 + Hyou1 protein_coding retained_intron MGP_C3HHeJ_T0090948.1 MGP_C3HHeJ_G0034110.1 mouse_genomes_project 9 18379918 18385771 - MGP_C3HHeJ_P0090948 Angptl6 protein_coding protein_coding MGP_C3HHeJ_T0015858.1 MGP_C3HHeJ_G0013962.1 mouse_genomes_project 9 72366047 72366255 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005416.1 MGP_C3HHeJ_G0004569.1 mouse_genomes_project 9 81942914 82029926 - Gm26907 antisense antisense MGP_C3HHeJ_T0094547.1 MGP_C3HHeJ_G0035049.1 mouse_genomes_project 9 112223072 112230638 - MGP_C3HHeJ_P0094547 protein_coding protein_coding MGP_C3HHeJ_T0094548.1 MGP_C3HHeJ_G0035049.1 mouse_genomes_project 9 112223727 112230574 - MGP_C3HHeJ_P0094548 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094549.1 MGP_C3HHeJ_G0035049.1 mouse_genomes_project 9 112225828 112230555 - MGP_C3HHeJ_P0094549 protein_coding protein_coding MGP_C3HHeJ_T0094550.1 MGP_C3HHeJ_G0035049.1 mouse_genomes_project 9 112226941 112229353 - MGP_C3HHeJ_P0094550 protein_coding protein_coding MGP_C3HHeJ_T0094764.1 MGP_C3HHeJ_G0035104.1 mouse_genomes_project 9 121157388 121189626 + MGP_C3HHeJ_P0094764 Acvr2b protein_coding protein_coding MGP_C3HHeJ_T0094765.1 MGP_C3HHeJ_G0035104.1 mouse_genomes_project 9 121157445 121189626 + MGP_C3HHeJ_P0094765 Acvr2b protein_coding protein_coding MGP_C3HHeJ_T0094766.1 MGP_C3HHeJ_G0035104.1 mouse_genomes_project 9 121157490 121189586 + MGP_C3HHeJ_P0094766 Acvr2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0093080.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87026644 87142364 - MGP_C3HHeJ_P0093080 Snap91 protein_coding protein_coding MGP_C3HHeJ_T0093081.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87026654 87069516 - Snap91 protein_coding retained_intron MGP_C3HHeJ_T0093082.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87026657 87142374 - MGP_C3HHeJ_P0093082 Snap91 protein_coding protein_coding MGP_C3HHeJ_T0093083.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87026657 87142374 - MGP_C3HHeJ_P0093083 Snap91 protein_coding protein_coding MGP_C3HHeJ_T0093084.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87027399 87142339 - MGP_C3HHeJ_P0093084 Snap91 protein_coding protein_coding MGP_C3HHeJ_T0093085.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87036144 87059459 - Snap91 protein_coding retained_intron MGP_C3HHeJ_T0093086.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87053357 87059633 - Snap91 protein_coding retained_intron MGP_C3HHeJ_T0093087.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87067239 87090523 - Snap91 protein_coding processed_transcript MGP_C3HHeJ_T0093088.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87084094 87142579 - Snap91 protein_coding retained_intron MGP_C3HHeJ_T0093089.1 MGP_C3HHeJ_G0034781.1 mouse_genomes_project 9 87095879 87142322 - MGP_C3HHeJ_P0093089 Snap91 protein_coding protein_coding MGP_C3HHeJ_T0091273.1 MGP_C3HHeJ_G0034222.1 mouse_genomes_project 9 33663322 33666408 - MGP_C3HHeJ_P0091273 Pate3 protein_coding protein_coding MGP_C3HHeJ_T0099720.1 MGP_C3HHeJ_G0037914.1 mouse_genomes_project 9 88781013 88781129 - Gm22985 snRNA snRNA MGP_C3HHeJ_T0015911.1 MGP_C3HHeJ_G0014015.1 mouse_genomes_project 9 93782707 93783710 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091849.1 MGP_C3HHeJ_G0034468.1 mouse_genomes_project 9 49510831 49538201 - MGP_C3HHeJ_P0091849 Dlat protein_coding protein_coding MGP_C3HHeJ_T0091850.1 MGP_C3HHeJ_G0034468.1 mouse_genomes_project 9 49512726 49521849 - Dlat protein_coding retained_intron MGP_C3HHeJ_T0091851.1 MGP_C3HHeJ_G0034468.1 mouse_genomes_project 9 49513654 49524609 - Dlat protein_coding processed_transcript MGP_C3HHeJ_T0091852.1 MGP_C3HHeJ_G0034468.1 mouse_genomes_project 9 49516112 49521550 - Dlat protein_coding retained_intron MGP_C3HHeJ_T0091853.1 MGP_C3HHeJ_G0034468.1 mouse_genomes_project 9 49516429 49526053 - Dlat protein_coding processed_transcript MGP_C3HHeJ_T0091854.1 MGP_C3HHeJ_G0034468.1 mouse_genomes_project 9 49521520 49528320 - Dlat protein_coding retained_intron MGP_C3HHeJ_T0091354.1 MGP_C3HHeJ_G0034248.1 mouse_genomes_project 9 35720096 35756320 + MGP_C3HHeJ_P0091354 Msantd2 protein_coding protein_coding MGP_C3HHeJ_T0015870.1 MGP_C3HHeJ_G0013974.1 mouse_genomes_project 9 76722477 76723375 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099699.1 MGP_C3HHeJ_G0037893.1 mouse_genomes_project 9 64719142 64719258 - Gm25313 snRNA snRNA MGP_C3HHeJ_T0091778.1 MGP_C3HHeJ_G0034438.1 mouse_genomes_project 9 45736311 45741292 + MGP_C3HHeJ_P0091778 protein_coding protein_coding MGP_C3HHeJ_T0091386.1 MGP_C3HHeJ_G0034270.1 mouse_genomes_project 9 36465542 36466493 - MGP_C3HHeJ_P0091386 Olfr891 protein_coding protein_coding MGP_C3HHeJ_T0009210.1 MGP_C3HHeJ_G0007395.1 mouse_genomes_project 9 91685578 91688866 + Gm28652 lincRNA lincRNA MGP_C3HHeJ_T0091466.1 MGP_C3HHeJ_G0034338.1 mouse_genomes_project 9 38387737 38388782 - MGP_C3HHeJ_P0091466 Olfr979 protein_coding protein_coding MGP_C3HHeJ_T0090992.1 MGP_C3HHeJ_G0034131.1 mouse_genomes_project 9 18848265 18889058 + MGP_C3HHeJ_P0090992 Slc44a2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090993.1 MGP_C3HHeJ_G0034131.1 mouse_genomes_project 9 18870532 18889051 + MGP_C3HHeJ_P0090993 Slc44a2 protein_coding protein_coding MGP_C3HHeJ_T0090694.1 MGP_C3HHeJ_G0034011.1 mouse_genomes_project 9 4792438 4822598 + MGP_C3HHeJ_P0090694 Tmem123 protein_coding protein_coding MGP_C3HHeJ_T0090695.1 MGP_C3HHeJ_G0034011.1 mouse_genomes_project 9 4792546 4819313 + MGP_C3HHeJ_P0090695 Tmem123 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090696.1 MGP_C3HHeJ_G0034011.1 mouse_genomes_project 9 4792562 4822593 + MGP_C3HHeJ_P0090696 Tmem123 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015836.1 MGP_C3HHeJ_G0013940.1 mouse_genomes_project 9 44521318 44522325 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091068.1 MGP_C3HHeJ_G0034159.1 mouse_genomes_project 9 19699064 19700245 - MGP_C3HHeJ_P0091068 Elof1 protein_coding protein_coding MGP_C3HHeJ_T0091069.1 MGP_C3HHeJ_G0034159.1 mouse_genomes_project 9 19699065 19704095 - MGP_C3HHeJ_P0091069 Elof1 protein_coding protein_coding MGP_C3HHeJ_T0093973.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108707226 108815801 - MGP_C3HHeJ_P0093973 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093974.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108709406 108793257 - MGP_C3HHeJ_P0093974 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093975.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108712636 108716113 - protein_coding retained_intron MGP_C3HHeJ_T0093976.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108723746 108727339 - protein_coding retained_intron MGP_C3HHeJ_T0093977.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108723979 108728453 - MGP_C3HHeJ_P0093977 protein_coding protein_coding MGP_C3HHeJ_T0093978.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108728461 108815771 - MGP_C3HHeJ_P0093978 protein_coding protein_coding MGP_C3HHeJ_T0093979.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108736864 108815773 - protein_coding processed_transcript MGP_C3HHeJ_T0093980.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108748237 108786710 - protein_coding processed_transcript MGP_C3HHeJ_T0093981.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108786595 108791432 - protein_coding retained_intron MGP_C3HHeJ_T0093982.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108800167 108815760 - protein_coding retained_intron MGP_C3HHeJ_T0093983.1 MGP_C3HHeJ_G0034953.1 mouse_genomes_project 9 108811877 108816275 - protein_coding retained_intron MGP_C3HHeJ_T0011658.1 MGP_C3HHeJ_G0009791.1 mouse_genomes_project 9 124688306 124688574 + Gm25341 misc_RNA misc_RNA MGP_C3HHeJ_T0009240.1 MGP_C3HHeJ_G0007419.1 mouse_genomes_project 9 107015092 107016264 - Gm29208 lincRNA lincRNA MGP_C3HHeJ_T0091915.1 MGP_C3HHeJ_G0034481.1 mouse_genomes_project 9 50116667 50143522 + MGP_C3HHeJ_P0091915 Pou2af1 protein_coding protein_coding MGP_C3HHeJ_T0092767.1 MGP_C3HHeJ_G0034707.1 mouse_genomes_project 9 72876930 72936127 + MGP_C3HHeJ_P0092767 Rab27a protein_coding protein_coding MGP_C3HHeJ_T0092768.1 MGP_C3HHeJ_G0034707.1 mouse_genomes_project 9 72876933 72936091 + MGP_C3HHeJ_P0092768 Rab27a protein_coding protein_coding MGP_C3HHeJ_T0092769.1 MGP_C3HHeJ_G0034707.1 mouse_genomes_project 9 72877060 72919626 + Rab27a protein_coding retained_intron MGP_C3HHeJ_T0092770.1 MGP_C3HHeJ_G0034707.1 mouse_genomes_project 9 72933332 72934913 + Rab27a protein_coding retained_intron MGP_C3HHeJ_T0093343.1 MGP_C3HHeJ_G0034835.1 mouse_genomes_project 9 97980152 98575459 - MGP_C3HHeJ_P0093343 Clstn2 protein_coding protein_coding MGP_C3HHeJ_T0093344.1 MGP_C3HHeJ_G0034835.1 mouse_genomes_project 9 97989016 98575261 - MGP_C3HHeJ_P0093344 Clstn2 protein_coding protein_coding MGP_C3HHeJ_T0090890.1 MGP_C3HHeJ_G0034095.1 mouse_genomes_project 9 17770025 17774323 + MGP_C3HHeJ_P0090890 Olfr39 protein_coding protein_coding MGP_C3HHeJ_T0090878.1 MGP_C3HHeJ_G0034083.1 mouse_genomes_project 9 16983546 17004795 + MGP_C3HHeJ_P0090878 Zfp317 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002376.1 MGP_C3HHeJ_G0002294.1 mouse_genomes_project 9 91730675 91731571 - TEC TEC MGP_C3HHeJ_T0005480.1 MGP_C3HHeJ_G0004616.1 mouse_genomes_project 9 116729481 116735119 - Gm4665 antisense antisense MGP_C3HHeJ_T0091326.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35094849 35298667 - MGP_C3HHeJ_P0091326 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091327.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35094849 35370655 - MGP_C3HHeJ_P0091327 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091328.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35094852 35370680 - MGP_C3HHeJ_P0091328 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091329.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35096345 35175669 - MGP_C3HHeJ_P0091329 Pknox2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091330.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35096509 35298637 - Pknox2 protein_coding processed_transcript MGP_C3HHeJ_T0091331.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35126126 35298637 - Pknox2 protein_coding retained_intron MGP_C3HHeJ_T0091332.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35139726 35298637 - Pknox2 protein_coding retained_intron MGP_C3HHeJ_T0091333.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35141498 35298637 - MGP_C3HHeJ_P0091333 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091334.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35141511 35357643 - MGP_C3HHeJ_P0091334 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091335.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35141527 35370688 - MGP_C3HHeJ_P0091335 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091336.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35159919 35368268 - MGP_C3HHeJ_P0091336 Pknox2 protein_coding protein_coding MGP_C3HHeJ_T0091337.1 MGP_C3HHeJ_G0034241.1 mouse_genomes_project 9 35196240 35370632 - Pknox2 protein_coding processed_transcript MGP_C3HHeJ_T0098559.1 MGP_C3HHeJ_G0036758.1 mouse_genomes_project 9 55290998 55292473 - Gm29322 sense_intronic sense_intronic MGP_C3HHeJ_T0097948.1 MGP_C3HHeJ_G0036160.1 mouse_genomes_project 9 38055823 38056726 - pseudogene pseudogene MGP_C3HHeJ_T0091078.1 MGP_C3HHeJ_G0034164.1 mouse_genomes_project 9 19847613 19859918 - MGP_C3HHeJ_P0091078 Zfp599 protein_coding protein_coding MGP_C3HHeJ_T0091771.1 MGP_C3HHeJ_G0034436.1 mouse_genomes_project 9 44995713 45007568 + Bud13 protein_coding retained_intron MGP_C3HHeJ_T0091772.1 MGP_C3HHeJ_G0034436.1 mouse_genomes_project 9 44995713 45012256 + MGP_C3HHeJ_P0091772 Bud13 protein_coding protein_coding MGP_C3HHeJ_T0091773.1 MGP_C3HHeJ_G0034436.1 mouse_genomes_project 9 45001917 45012256 + MGP_C3HHeJ_P0091773 Bud13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091774.1 MGP_C3HHeJ_G0034436.1 mouse_genomes_project 9 45001939 45004015 + Bud13 protein_coding retained_intron MGP_C3HHeJ_T0091385.1 MGP_C3HHeJ_G0034269.1 mouse_genomes_project 9 36427186 36428131 + MGP_C3HHeJ_P0091385 Olfr890 protein_coding protein_coding MGP_C3HHeJ_T0092569.1 MGP_C3HHeJ_G0034672.1 mouse_genomes_project 9 68323730 68335564 + Rora protein_coding processed_transcript MGP_C3HHeJ_T0092570.1 MGP_C3HHeJ_G0034672.1 mouse_genomes_project 9 68323730 69091180 + MGP_C3HHeJ_P0092570 Rora protein_coding protein_coding MGP_C3HHeJ_T0092571.1 MGP_C3HHeJ_G0034672.1 mouse_genomes_project 9 68323835 69067460 + MGP_C3HHeJ_P0092571 Rora protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092572.1 MGP_C3HHeJ_G0034672.1 mouse_genomes_project 9 68325247 68334778 + Rora protein_coding processed_transcript MGP_C3HHeJ_T0092573.1 MGP_C3HHeJ_G0034672.1 mouse_genomes_project 9 68893401 68949238 + Rora protein_coding processed_transcript MGP_C3HHeJ_T0092574.1 MGP_C3HHeJ_G0034672.1 mouse_genomes_project 9 68990145 69082734 + MGP_C3HHeJ_P0092574 Rora protein_coding protein_coding MGP_C3HHeJ_T0010991.1 MGP_C3HHeJ_G0009124.1 mouse_genomes_project 9 70165170 70165230 - Mir5626 miRNA miRNA MGP_C3HHeJ_T0093108.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88624532 88691376 - MGP_C3HHeJ_P0093108 Snx14 protein_coding protein_coding MGP_C3HHeJ_T0093109.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88624534 88648799 - Snx14 protein_coding retained_intron MGP_C3HHeJ_T0093110.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88624534 88691323 - MGP_C3HHeJ_P0093110 Snx14 protein_coding protein_coding MGP_C3HHeJ_T0093111.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88624546 88691383 - MGP_C3HHeJ_P0093111 Snx14 protein_coding protein_coding MGP_C3HHeJ_T0093112.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88624549 88691339 - MGP_C3HHeJ_P0093112 Snx14 protein_coding protein_coding MGP_C3HHeJ_T0093113.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88631239 88691354 - MGP_C3HHeJ_P0093113 Snx14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093114.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88642401 88644713 - Snx14 protein_coding retained_intron MGP_C3HHeJ_T0093116.1 MGP_C3HHeJ_G0034788.1 mouse_genomes_project 9 88672217 88691337 - Snx14 protein_coding retained_intron MGP_C3HHeJ_T0099721.1 MGP_C3HHeJ_G0037915.1 mouse_genomes_project 9 90625001 90625172 + Gm22717 snRNA snRNA MGP_C3HHeJ_T0091422.1 MGP_C3HHeJ_G0034300.1 mouse_genomes_project 9 37181033 37181964 + MGP_C3HHeJ_P0091422 Olfr26 protein_coding protein_coding MGP_C3HHeJ_T0015946.1 MGP_C3HHeJ_G0014050.1 mouse_genomes_project 9 109287794 109288158 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090892.1 MGP_C3HHeJ_G0034097.1 mouse_genomes_project 9 17796264 17812923 - MGP_C3HHeJ_P0090892 Olfr18 protein_coding protein_coding MGP_C3HHeJ_T0092301.1 MGP_C3HHeJ_G0034599.1 mouse_genomes_project 9 61277572 61308890 - MGP_C3HHeJ_P0092301 Kif23 protein_coding protein_coding MGP_C3HHeJ_T0005446.1 MGP_C3HHeJ_G0004589.1 mouse_genomes_project 9 106050921 106059944 + antisense antisense MGP_C3HHeJ_T0092337.1 MGP_C3HHeJ_G0034609.1 mouse_genomes_project 9 62291973 62405066 - MGP_C3HHeJ_P0092337 Pias1 protein_coding protein_coding MGP_C3HHeJ_T0091083.1 MGP_C3HHeJ_G0034169.1 mouse_genomes_project 9 20074700 20082473 + MGP_C3HHeJ_P0091083 Gm17545 protein_coding protein_coding MGP_C3HHeJ_T0094551.1 MGP_C3HHeJ_G0035050.1 mouse_genomes_project 9 112238264 112258211 + MGP_C3HHeJ_P0094551 Lrrc2 protein_coding protein_coding MGP_C3HHeJ_T0094552.1 MGP_C3HHeJ_G0035050.1 mouse_genomes_project 9 112238288 112267370 + MGP_C3HHeJ_P0094552 Lrrc2 protein_coding protein_coding MGP_C3HHeJ_T0094553.1 MGP_C3HHeJ_G0035050.1 mouse_genomes_project 9 112245351 112264440 + MGP_C3HHeJ_P0094553 Lrrc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091047.1 MGP_C3HHeJ_G0034148.1 mouse_genomes_project 9 19492587 19500988 + MGP_C3HHeJ_P0091047 Ccdc159 protein_coding protein_coding MGP_C3HHeJ_T0091048.1 MGP_C3HHeJ_G0034148.1 mouse_genomes_project 9 19492587 19500988 + MGP_C3HHeJ_P0091048 Ccdc159 protein_coding protein_coding MGP_C3HHeJ_T0090688.1 MGP_C3HHeJ_G0034007.1 mouse_genomes_project 9 4592614 4602660 + MGP_C3HHeJ_P0090688 Mmp8 protein_coding protein_coding MGP_C3HHeJ_T0092147.1 MGP_C3HHeJ_G0034565.1 mouse_genomes_project 9 57167818 57184707 + MGP_C3HHeJ_P0092147 Cyp11a1 protein_coding protein_coding MGP_C3HHeJ_T0092148.1 MGP_C3HHeJ_G0034565.1 mouse_genomes_project 9 57176070 57191866 + MGP_C3HHeJ_P0092148 Cyp11a1 protein_coding protein_coding MGP_C3HHeJ_T0092149.1 MGP_C3HHeJ_G0034565.1 mouse_genomes_project 9 57176396 57186355 + Cyp11a1 protein_coding retained_intron MGP_C3HHeJ_T0092150.1 MGP_C3HHeJ_G0034565.1 mouse_genomes_project 9 57181367 57190086 + MGP_C3HHeJ_P0092150 Cyp11a1 protein_coding protein_coding MGP_C3HHeJ_T0093408.1 MGP_C3HHeJ_G0034856.1 mouse_genomes_project 9 100216026 100227355 + MGP_C3HHeJ_P0093408 A4gnt protein_coding protein_coding MGP_C3HHeJ_T0015923.1 MGP_C3HHeJ_G0014027.1 mouse_genomes_project 9 97730209 97732046 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005467.1 MGP_C3HHeJ_G0004603.1 mouse_genomes_project 9 108504032 108515630 - Gm16343 antisense antisense MGP_C3HHeJ_T0015865.1 MGP_C3HHeJ_G0013969.1 mouse_genomes_project 9 74566357 74566664 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090648.1 MGP_C3HHeJ_G0033993.1 mouse_genomes_project 9 1281168 1284495 + MGP_C3HHeJ_P0090648 Msantd4 protein_coding protein_coding MGP_C3HHeJ_T0092620.1 MGP_C3HHeJ_G0034680.1 mouse_genomes_project 9 69954303 70159544 + MGP_C3HHeJ_P0092620 Myo1e protein_coding protein_coding MGP_C3HHeJ_T0005453.1 MGP_C3HHeJ_G0004594.1 mouse_genomes_project 9 107210503 107236989 - Gm29123 antisense antisense MGP_C3HHeJ_T0099675.1 MGP_C3HHeJ_G0037869.1 mouse_genomes_project 9 12457368 12457523 - Gm22658 snRNA snRNA MGP_C3HHeJ_T0101007.1 MGP_C3HHeJ_G0039201.1 mouse_genomes_project 9 111346541 111346667 - Gm23377 snoRNA snoRNA MGP_C3HHeJ_T0094751.1 MGP_C3HHeJ_G0035099.1 mouse_genomes_project 9 120924123 120942739 - MGP_C3HHeJ_P0094751 Slc22a13 protein_coding protein_coding MGP_C3HHeJ_T0018354.1 MGP_C3HHeJ_G0015518.1 mouse_genomes_project 9 108998768 109005686 + Gm20529 processed_transcript processed_transcript MGP_C3HHeJ_T0091223.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33194322 33211260 - MGP_C3HHeJ_P0091223 Tirap protein_coding protein_coding MGP_C3HHeJ_T0091224.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33197105 33210957 - MGP_C3HHeJ_P0091224 Tirap protein_coding protein_coding MGP_C3HHeJ_T0091225.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33197105 33210897 - MGP_C3HHeJ_P0091225 Tirap protein_coding protein_coding MGP_C3HHeJ_T0091226.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33197667 33210939 - MGP_C3HHeJ_P0091226 Tirap protein_coding protein_coding MGP_C3HHeJ_T0091227.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33199060 33210852 - MGP_C3HHeJ_P0091227 Tirap protein_coding protein_coding MGP_C3HHeJ_T0091228.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33199357 33201732 - MGP_C3HHeJ_P0091228 Tirap protein_coding protein_coding MGP_C3HHeJ_T0091229.1 MGP_C3HHeJ_G0034211.1 mouse_genomes_project 9 33201368 33210468 - MGP_C3HHeJ_P0091229 Tirap protein_coding protein_coding MGP_C3HHeJ_T0090850.1 MGP_C3HHeJ_G0034058.1 mouse_genomes_project 9 15756941 15758464 + MGP_C3HHeJ_P0090850 Gm5612 protein_coding protein_coding MGP_C3HHeJ_T0091114.1 MGP_C3HHeJ_G0034179.1 mouse_genomes_project 9 23184228 23312139 + MGP_C3HHeJ_P0091114 Eepd1 protein_coding protein_coding MGP_C3HHeJ_T0091115.1 MGP_C3HHeJ_G0034179.1 mouse_genomes_project 9 23185550 23189997 + Eepd1 protein_coding processed_transcript MGP_C3HHeJ_T0092380.1 MGP_C3HHeJ_G0034619.1 mouse_genomes_project 9 63651719 63656786 + MGP_C3HHeJ_P0092380 Rpl4 protein_coding protein_coding MGP_C3HHeJ_T0091683.1 MGP_C3HHeJ_G0034410.1 mouse_genomes_project 9 43692939 43705320 + MGP_C3HHeJ_P0091683 Mpzl2 protein_coding protein_coding MGP_C3HHeJ_T0091601.1 MGP_C3HHeJ_G0034384.1 mouse_genomes_project 9 42935032 42944342 + MGP_C3HHeJ_P0091601 Dpagt1 protein_coding protein_coding MGP_C3HHeJ_T0009139.1 MGP_C3HHeJ_G0007338.1 mouse_genomes_project 9 33528274 33530228 - lincRNA lincRNA MGP_C3HHeJ_T0091031.1 MGP_C3HHeJ_G0034140.1 mouse_genomes_project 9 19172215 19264301 + MGP_C3HHeJ_P0091031 Smarca4 protein_coding protein_coding MGP_C3HHeJ_T0091032.1 MGP_C3HHeJ_G0034140.1 mouse_genomes_project 9 19172215 19264288 + MGP_C3HHeJ_P0091032 Smarca4 protein_coding protein_coding MGP_C3HHeJ_T0091033.1 MGP_C3HHeJ_G0034140.1 mouse_genomes_project 9 19172310 19263437 + MGP_C3HHeJ_P0091033 Smarca4 protein_coding protein_coding MGP_C3HHeJ_T0091034.1 MGP_C3HHeJ_G0034140.1 mouse_genomes_project 9 19193533 19246379 + MGP_C3HHeJ_P0091034 Smarca4 protein_coding protein_coding MGP_C3HHeJ_T0100950.1 MGP_C3HHeJ_G0039144.1 mouse_genomes_project 9 16792517 16792646 + Gm23048 snoRNA snoRNA MGP_C3HHeJ_T0009267.1 MGP_C3HHeJ_G0007438.1 mouse_genomes_project 9 122765976 122767457 - 1700020M21Rik lincRNA lincRNA MGP_C3HHeJ_T0091440.1 MGP_C3HHeJ_G0034318.1 mouse_genomes_project 9 37917439 37918381 - MGP_C3HHeJ_P0091440 Olfr958 protein_coding protein_coding MGP_C3HHeJ_T0002412.1 MGP_C3HHeJ_G0002330.1 mouse_genomes_project 9 105067155 105070138 - TEC TEC MGP_C3HHeJ_T0091108.1 MGP_C3HHeJ_G0034175.1 mouse_genomes_project 9 22281223 22281866 + MGP_C3HHeJ_P0091108 Cypt4 protein_coding protein_coding MGP_C3HHeJ_T0094535.1 MGP_C3HHeJ_G0035046.1 mouse_genomes_project 9 112147289 112161461 - MGP_C3HHeJ_P0094535 Tmie protein_coding protein_coding MGP_C3HHeJ_T0094536.1 MGP_C3HHeJ_G0035046.1 mouse_genomes_project 9 112156782 112160655 - Tmie protein_coding processed_transcript MGP_C3HHeJ_T0094537.1 MGP_C3HHeJ_G0035046.1 mouse_genomes_project 9 112156830 112157380 - Tmie protein_coding retained_intron MGP_C3HHeJ_T0091468.1 MGP_C3HHeJ_G0034340.1 mouse_genomes_project 9 38412919 38413916 + MGP_C3HHeJ_P0091468 Olfr981 protein_coding protein_coding MGP_C3HHeJ_T0099689.1 MGP_C3HHeJ_G0037883.1 mouse_genomes_project 9 44581966 44582065 - Gm24646 snRNA snRNA MGP_C3HHeJ_T0094660.1 MGP_C3HHeJ_G0035067.1 mouse_genomes_project 9 115498874 115541030 + MGP_C3HHeJ_P0094660 Susd5 protein_coding protein_coding MGP_C3HHeJ_T0090744.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10909593 10965518 + MGP_C3HHeJ_P0090744 Mtmr2 protein_coding protein_coding MGP_C3HHeJ_T0090745.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10909597 10940138 + Mtmr2 protein_coding processed_transcript MGP_C3HHeJ_T0090746.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10909609 10965518 + MGP_C3HHeJ_P0090746 Mtmr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090747.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10909731 10942656 + MGP_C3HHeJ_P0090747 Mtmr2 protein_coding protein_coding MGP_C3HHeJ_T0090748.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10909733 10962758 + MGP_C3HHeJ_P0090748 Mtmr2 protein_coding protein_coding MGP_C3HHeJ_T0090749.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10909801 10942656 + MGP_C3HHeJ_P0090749 Mtmr2 protein_coding protein_coding MGP_C3HHeJ_T0090750.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10922510 10949265 + MGP_C3HHeJ_P0090750 Mtmr2 protein_coding protein_coding MGP_C3HHeJ_T0090751.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10923273 10942654 + Mtmr2 protein_coding processed_transcript MGP_C3HHeJ_T0090752.1 MGP_C3HHeJ_G0034027.1 mouse_genomes_project 9 10953198 10965517 + Mtmr2 protein_coding retained_intron MGP_C3HHeJ_T0093146.1 MGP_C3HHeJ_G0034797.1 mouse_genomes_project 9 89486712 89487643 + MGP_C3HHeJ_P0093146 protein_coding protein_coding MGP_C3HHeJ_T0099718.1 MGP_C3HHeJ_G0037912.1 mouse_genomes_project 9 84853107 84853271 + Gm26126 snRNA snRNA MGP_C3HHeJ_T0091537.1 MGP_C3HHeJ_G0034365.1 mouse_genomes_project 9 41775000 41793494 - MGP_C3HHeJ_P0091537 Oaf protein_coding protein_coding MGP_C3HHeJ_T0093544.1 MGP_C3HHeJ_G0034883.1 mouse_genomes_project 9 104167264 104226652 - MGP_C3HHeJ_P0093544 Bfsp2 protein_coding protein_coding MGP_C3HHeJ_T0093545.1 MGP_C3HHeJ_G0034883.1 mouse_genomes_project 9 104167268 104191339 - Bfsp2 protein_coding processed_transcript MGP_C3HHeJ_T0092271.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59875384 60007442 - MGP_C3HHeJ_P0092271 Lrrc49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092272.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59875697 59963434 - MGP_C3HHeJ_P0092272 Lrrc49 protein_coding protein_coding MGP_C3HHeJ_T0092273.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59895320 60007436 - MGP_C3HHeJ_P0092273 Lrrc49 protein_coding protein_coding MGP_C3HHeJ_T0092274.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59895320 60007476 - MGP_C3HHeJ_P0092274 Lrrc49 protein_coding protein_coding MGP_C3HHeJ_T0092275.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59895330 60006852 - MGP_C3HHeJ_P0092275 Lrrc49 protein_coding protein_coding MGP_C3HHeJ_T0092276.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59895330 60006852 - MGP_C3HHeJ_P0092276 Lrrc49 protein_coding protein_coding MGP_C3HHeJ_T0092277.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59895907 59906625 - Lrrc49 protein_coding retained_intron MGP_C3HHeJ_T0092278.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59918905 60007221 - Lrrc49 protein_coding retained_intron MGP_C3HHeJ_T0092279.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59919459 59963343 - Lrrc49 protein_coding processed_transcript MGP_C3HHeJ_T0092280.1 MGP_C3HHeJ_G0034593.1 mouse_genomes_project 9 59999939 60006990 - MGP_C3HHeJ_P0092280 Lrrc49 protein_coding protein_coding MGP_C3HHeJ_T0092200.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787380 57864345 + MGP_C3HHeJ_P0092200 Nptn protein_coding protein_coding MGP_C3HHeJ_T0092201.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787432 57865905 + MGP_C3HHeJ_P0092201 Nptn protein_coding protein_coding MGP_C3HHeJ_T0092202.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787514 57853648 + MGP_C3HHeJ_P0092202 Nptn protein_coding non_stop_decay MGP_C3HHeJ_T0092203.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787546 57865905 + MGP_C3HHeJ_P0092203 Nptn protein_coding protein_coding MGP_C3HHeJ_T0092204.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787547 57864345 + MGP_C3HHeJ_P0092204 Nptn protein_coding protein_coding MGP_C3HHeJ_T0092205.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787547 57856828 + MGP_C3HHeJ_P0092205 Nptn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092206.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787576 57864345 + MGP_C3HHeJ_P0092206 Nptn protein_coding protein_coding MGP_C3HHeJ_T0092207.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787581 57864989 + MGP_C3HHeJ_P0092207 Nptn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092208.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57787584 57856690 + Nptn protein_coding processed_transcript MGP_C3HHeJ_T0092209.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57837945 57871008 + MGP_C3HHeJ_P0092209 Nptn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092210.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57837946 57868232 + MGP_C3HHeJ_P0092210 Nptn protein_coding protein_coding MGP_C3HHeJ_T0092211.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57863225 57865084 + Nptn protein_coding retained_intron MGP_C3HHeJ_T0092212.1 MGP_C3HHeJ_G0034576.1 mouse_genomes_project 9 57865002 57865845 + Nptn protein_coding processed_transcript MGP_C3HHeJ_T0092915.1 MGP_C3HHeJ_G0034748.1 mouse_genomes_project 9 78476749 78479364 - MGP_C3HHeJ_P0092915 Ooep protein_coding protein_coding MGP_C3HHeJ_T0091706.1 MGP_C3HHeJ_G0034419.1 mouse_genomes_project 9 43982191 44011673 + MGP_C3HHeJ_P0091706 Tmprss13 protein_coding protein_coding MGP_C3HHeJ_T0100998.1 MGP_C3HHeJ_G0039192.1 mouse_genomes_project 9 101910792 101910919 + Gm24338 snoRNA snoRNA MGP_C3HHeJ_T0091602.1 MGP_C3HHeJ_G0034385.1 mouse_genomes_project 9 42945435 42948371 + MGP_C3HHeJ_P0091602 H2afx protein_coding protein_coding MGP_C3HHeJ_T0092305.1 MGP_C3HHeJ_G0034601.1 mouse_genomes_project 9 61429482 61442842 - MGP_C3HHeJ_P0092305 Glce protein_coding protein_coding MGP_C3HHeJ_T0092306.1 MGP_C3HHeJ_G0034601.1 mouse_genomes_project 9 61429482 61499495 - MGP_C3HHeJ_P0092306 Glce protein_coding protein_coding MGP_C3HHeJ_T0092307.1 MGP_C3HHeJ_G0034601.1 mouse_genomes_project 9 61432245 61443076 - Glce protein_coding retained_intron MGP_C3HHeJ_T0092308.1 MGP_C3HHeJ_G0034601.1 mouse_genomes_project 9 61442703 61499540 - MGP_C3HHeJ_P0092308 Glce protein_coding protein_coding MGP_C3HHeJ_T0092309.1 MGP_C3HHeJ_G0034601.1 mouse_genomes_project 9 61452560 61499494 - Glce protein_coding processed_transcript MGP_C3HHeJ_T0099697.1 MGP_C3HHeJ_G0037891.1 mouse_genomes_project 9 62565803 62565910 + Gm25064 snRNA snRNA MGP_C3HHeJ_T0094538.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112161217 112164070 + Als2cl protein_coding processed_transcript MGP_C3HHeJ_T0094539.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112161521 112183302 + MGP_C3HHeJ_P0094539 Als2cl protein_coding protein_coding MGP_C3HHeJ_T0094540.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112161553 112183308 + MGP_C3HHeJ_P0094540 Als2cl protein_coding protein_coding MGP_C3HHeJ_T0094541.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112161580 112166241 + MGP_C3HHeJ_P0094541 Als2cl protein_coding protein_coding MGP_C3HHeJ_T0094542.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112161684 112183305 + MGP_C3HHeJ_P0094542 Als2cl protein_coding protein_coding MGP_C3HHeJ_T0094543.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112167108 112168669 + Als2cl protein_coding retained_intron MGP_C3HHeJ_T0094544.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112167649 112171495 + Als2cl protein_coding retained_intron MGP_C3HHeJ_T0094545.1 MGP_C3HHeJ_G0035047.1 mouse_genomes_project 9 112169337 112183306 + Als2cl protein_coding processed_transcript MGP_C3HHeJ_T0091423.1 MGP_C3HHeJ_G0034301.1 mouse_genomes_project 9 37260148 37261075 + MGP_C3HHeJ_P0091423 protein_coding protein_coding MGP_C3HHeJ_T0099705.1 MGP_C3HHeJ_G0037899.1 mouse_genomes_project 9 68124335 68124442 - Gm22169 snRNA snRNA MGP_C3HHeJ_T0094284.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109895034 109907571 + MGP_C3HHeJ_P0094284 Uqcrc1 protein_coding protein_coding MGP_C3HHeJ_T0094285.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109895115 109902851 + MGP_C3HHeJ_P0094285 Uqcrc1 protein_coding protein_coding MGP_C3HHeJ_T0094286.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109895116 109902667 + MGP_C3HHeJ_P0094286 Uqcrc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094287.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109895293 109902386 + Uqcrc1 protein_coding retained_intron MGP_C3HHeJ_T0094288.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109900518 109902973 + MGP_C3HHeJ_P0094288 Uqcrc1 protein_coding protein_coding MGP_C3HHeJ_T0094289.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109904112 109907567 + Uqcrc1 protein_coding retained_intron MGP_C3HHeJ_T0094290.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109905364 109907488 + MGP_C3HHeJ_P0094290 Uqcrc1 protein_coding protein_coding MGP_C3HHeJ_T0094291.1 MGP_C3HHeJ_G0035000.1 mouse_genomes_project 9 109906258 109907060 + Uqcrc1 protein_coding retained_intron MGP_C3HHeJ_T0093623.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106254865 106314804 - MGP_C3HHeJ_P0093623 Atp2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093624.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106254865 106376055 - MGP_C3HHeJ_P0093624 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093625.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106254872 106349582 - MGP_C3HHeJ_P0093625 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093626.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106260648 106350259 - MGP_C3HHeJ_P0093626 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093627.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106261028 106350298 - MGP_C3HHeJ_P0093627 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093628.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106261029 106376165 - MGP_C3HHeJ_P0093628 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093629.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106262590 106287604 - Atp2c1 protein_coding processed_transcript MGP_C3HHeJ_T0093630.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106264377 106267446 - Atp2c1 protein_coding retained_intron MGP_C3HHeJ_T0093631.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106269262 106283756 - Atp2c1 protein_coding retained_intron MGP_C3HHeJ_T0093632.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106271951 106350242 - MGP_C3HHeJ_P0093632 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093633.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106286206 106293163 - Atp2c1 protein_coding retained_intron MGP_C3HHeJ_T0093634.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106295880 106349624 - Atp2c1 protein_coding processed_transcript MGP_C3HHeJ_T0093635.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106301793 106325273 - MGP_C3HHeJ_P0093635 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093636.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106302763 106350212 - MGP_C3HHeJ_P0093636 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093637.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106303427 106350660 - Atp2c1 protein_coding retained_intron MGP_C3HHeJ_T0093638.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106303483 106349775 - MGP_C3HHeJ_P0093638 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093639.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106313419 106382234 - Atp2c1 protein_coding processed_transcript MGP_C3HHeJ_T0093640.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106313419 106350648 - MGP_C3HHeJ_P0093640 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093641.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106314790 106350270 - MGP_C3HHeJ_P0093641 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093642.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106319562 106349829 - MGP_C3HHeJ_P0093642 Atp2c1 protein_coding protein_coding MGP_C3HHeJ_T0093643.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106323985 106350270 - Atp2c1 protein_coding retained_intron MGP_C3HHeJ_T0093644.1 MGP_C3HHeJ_G0034898.1 mouse_genomes_project 9 106374909 106376322 - Atp2c1 protein_coding retained_intron MGP_C3HHeJ_T0090731.1 MGP_C3HHeJ_G0034022.1 mouse_genomes_project 9 6760036 8047030 - MGP_C3HHeJ_P0090731 Cntn5 protein_coding protein_coding MGP_C3HHeJ_T0090732.1 MGP_C3HHeJ_G0034022.1 mouse_genomes_project 9 6760114 8047079 - MGP_C3HHeJ_P0090732 Cntn5 protein_coding protein_coding MGP_C3HHeJ_T0090733.1 MGP_C3HHeJ_G0034022.1 mouse_genomes_project 9 6760508 7529463 - MGP_C3HHeJ_P0090733 Cntn5 protein_coding protein_coding MGP_C3HHeJ_T0090734.1 MGP_C3HHeJ_G0034022.1 mouse_genomes_project 9 6760508 7529463 - MGP_C3HHeJ_P0090734 Cntn5 protein_coding protein_coding MGP_C3HHeJ_T0090735.1 MGP_C3HHeJ_G0034022.1 mouse_genomes_project 9 7766882 8046753 - Cntn5 protein_coding retained_intron MGP_C3HHeJ_T0091343.1 MGP_C3HHeJ_G0034245.1 mouse_genomes_project 9 35600454 35619616 + MGP_C3HHeJ_P0091343 Hepacam protein_coding protein_coding MGP_C3HHeJ_T0015917.1 MGP_C3HHeJ_G0014021.1 mouse_genomes_project 9 96150277 96150866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093035.1 MGP_C3HHeJ_G0034773.1 mouse_genomes_project 9 85916033 85980532 - MGP_C3HHeJ_P0093035 Ibtk protein_coding protein_coding MGP_C3HHeJ_T0093036.1 MGP_C3HHeJ_G0034773.1 mouse_genomes_project 9 85916215 85980532 - MGP_C3HHeJ_P0093036 Ibtk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093037.1 MGP_C3HHeJ_G0034773.1 mouse_genomes_project 9 85916230 85952029 - Ibtk protein_coding retained_intron MGP_C3HHeJ_T0093038.1 MGP_C3HHeJ_G0034773.1 mouse_genomes_project 9 85939375 85949744 - Ibtk protein_coding retained_intron MGP_C3HHeJ_T0093039.1 MGP_C3HHeJ_G0034773.1 mouse_genomes_project 9 85951388 85980512 - Ibtk protein_coding retained_intron MGP_C3HHeJ_T0093040.1 MGP_C3HHeJ_G0034773.1 mouse_genomes_project 9 85959498 85962441 - Ibtk protein_coding retained_intron MGP_C3HHeJ_T0010976.1 MGP_C3HHeJ_G0009109.1 mouse_genomes_project 9 50005081 50005165 - Mir34b miRNA miRNA MGP_C3HHeJ_T0092780.1 MGP_C3HHeJ_G0034711.1 mouse_genomes_project 9 73322733 73803287 - MGP_C3HHeJ_P0092780 Unc13c protein_coding protein_coding MGP_C3HHeJ_T0092781.1 MGP_C3HHeJ_G0034711.1 mouse_genomes_project 9 73322737 73803266 - MGP_C3HHeJ_P0092781 Unc13c protein_coding unknown_likely_coding MGP_C3HHeJ_T0092782.1 MGP_C3HHeJ_G0034711.1 mouse_genomes_project 9 73324175 73775774 - MGP_C3HHeJ_P0092782 Unc13c protein_coding protein_coding MGP_C3HHeJ_T0009124.1 MGP_C3HHeJ_G0007323.1 mouse_genomes_project 9 18106841 18111564 - Gm26521 lincRNA lincRNA MGP_C3HHeJ_T0092748.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813595 72847768 + MGP_C3HHeJ_P0092748 Ccpg1 protein_coding protein_coding MGP_C3HHeJ_T0092749.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813670 72833167 + MGP_C3HHeJ_P0092749 Ccpg1 protein_coding protein_coding MGP_C3HHeJ_T0092750.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813744 72845366 + MGP_C3HHeJ_P0092750 Ccpg1 protein_coding protein_coding MGP_C3HHeJ_T0092751.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813752 72816208 + Ccpg1 protein_coding retained_intron MGP_C3HHeJ_T0092752.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813771 72847428 + MGP_C3HHeJ_P0092752 Ccpg1 protein_coding protein_coding MGP_C3HHeJ_T0092753.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813771 72847766 + MGP_C3HHeJ_P0092753 Ccpg1 protein_coding protein_coding MGP_C3HHeJ_T0092754.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813774 72833439 + Ccpg1 protein_coding retained_intron MGP_C3HHeJ_T0092755.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72813785 72845359 + MGP_C3HHeJ_P0092755 Ccpg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092758.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72841315 72843405 + Ccpg1 protein_coding retained_intron MGP_C3HHeJ_T0092761.1 MGP_C3HHeJ_G0034705.1 mouse_genomes_project 9 72846400 72847768 + Ccpg1 protein_coding retained_intron MGP_C3HHeJ_T0093500.1 MGP_C3HHeJ_G0034874.1 mouse_genomes_project 9 103551891 103631007 + MGP_C3HHeJ_P0093500 Ryk protein_coding protein_coding MGP_C3HHeJ_T0093501.1 MGP_C3HHeJ_G0034874.1 mouse_genomes_project 9 103551946 103631418 + MGP_C3HHeJ_P0093501 Ryk protein_coding protein_coding MGP_C3HHeJ_T0093502.1 MGP_C3HHeJ_G0034874.1 mouse_genomes_project 9 103551956 103631770 + MGP_C3HHeJ_P0093502 Ryk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093503.1 MGP_C3HHeJ_G0034874.1 mouse_genomes_project 9 103563465 103580821 + Ryk protein_coding processed_transcript MGP_C3HHeJ_T0093504.1 MGP_C3HHeJ_G0034874.1 mouse_genomes_project 9 103588148 103601352 + Ryk protein_coding retained_intron MGP_C3HHeJ_T0093505.1 MGP_C3HHeJ_G0034874.1 mouse_genomes_project 9 103620905 103621896 + Ryk protein_coding retained_intron MGP_C3HHeJ_T0093908.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108543041 108566675 - MGP_C3HHeJ_P0093908 Gnai2 protein_coding protein_coding MGP_C3HHeJ_T0093909.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108543041 108566620 - MGP_C3HHeJ_P0093909 Gnai2 protein_coding protein_coding MGP_C3HHeJ_T0093910.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108543856 108544964 - Gnai2 protein_coding retained_intron MGP_C3HHeJ_T0093911.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108544572 108545428 - Gnai2 protein_coding retained_intron MGP_C3HHeJ_T0093912.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108545141 108546299 - Gnai2 protein_coding retained_intron MGP_C3HHeJ_T0093913.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108545416 108557935 - MGP_C3HHeJ_P0093913 Gnai2 protein_coding protein_coding MGP_C3HHeJ_T0093914.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108549596 108566642 - Gnai2 protein_coding retained_intron MGP_C3HHeJ_T0093915.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108550032 108550965 - Gnai2 protein_coding retained_intron MGP_C3HHeJ_T0093916.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108550154 108566645 - MGP_C3HHeJ_P0093916 Gnai2 protein_coding protein_coding MGP_C3HHeJ_T0093917.1 MGP_C3HHeJ_G0034948.1 mouse_genomes_project 9 108566407 108566651 - MGP_C3HHeJ_P0093917 Gnai2 protein_coding protein_coding MGP_C3HHeJ_T0090889.1 MGP_C3HHeJ_G0034094.1 mouse_genomes_project 9 17711896 17735604 + MGP_C3HHeJ_P0090889 Olfr872 protein_coding protein_coding MGP_C3HHeJ_T0015906.1 MGP_C3HHeJ_G0014010.1 mouse_genomes_project 9 91563376 91563799 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018319.1 MGP_C3HHeJ_G0015505.1 mouse_genomes_project 9 74701386 74708001 + Gm16551 processed_transcript lincRNA MGP_C3HHeJ_T0018320.1 MGP_C3HHeJ_G0015505.1 mouse_genomes_project 9 74701832 74715264 + Gm16551 processed_transcript lincRNA MGP_C3HHeJ_T0018321.1 MGP_C3HHeJ_G0015505.1 mouse_genomes_project 9 74701898 74702763 + Gm16551 processed_transcript retained_intron MGP_C3HHeJ_T0018322.1 MGP_C3HHeJ_G0015505.1 mouse_genomes_project 9 74701921 74708000 + Gm16551 processed_transcript lincRNA MGP_C3HHeJ_T0018323.1 MGP_C3HHeJ_G0015505.1 mouse_genomes_project 9 74702390 74706332 + Gm16551 processed_transcript retained_intron MGP_C3HHeJ_T0011650.1 MGP_C3HHeJ_G0009783.1 mouse_genomes_project 9 103714255 103714577 + Gm25842 misc_RNA misc_RNA MGP_C3HHeJ_T0091141.1 MGP_C3HHeJ_G0034188.1 mouse_genomes_project 9 24871455 24933856 - MGP_C3HHeJ_P0091141 Jam3 protein_coding protein_coding MGP_C3HHeJ_T0091142.1 MGP_C3HHeJ_G0034188.1 mouse_genomes_project 9 24874738 24933853 - MGP_C3HHeJ_P0091142 Jam3 protein_coding protein_coding MGP_C3HHeJ_T0092884.1 MGP_C3HHeJ_G0034738.1 mouse_genomes_project 9 78097376 78110530 + MGP_C3HHeJ_P0092884 Gcm1 protein_coding protein_coding MGP_C3HHeJ_T0093560.1 MGP_C3HHeJ_G0034887.1 mouse_genomes_project 9 104807662 104825555 - MGP_C3HHeJ_P0093560 Uba5 protein_coding protein_coding MGP_C3HHeJ_T0093561.1 MGP_C3HHeJ_G0034887.1 mouse_genomes_project 9 104808711 104818908 - MGP_C3HHeJ_P0093561 Uba5 protein_coding protein_coding MGP_C3HHeJ_T0093562.1 MGP_C3HHeJ_G0034887.1 mouse_genomes_project 9 104810645 104825484 - MGP_C3HHeJ_P0093562 Uba5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093563.1 MGP_C3HHeJ_G0034887.1 mouse_genomes_project 9 104819490 104822884 - Uba5 protein_coding retained_intron MGP_C3HHeJ_T0100957.1 MGP_C3HHeJ_G0039151.1 mouse_genomes_project 9 31908002 31908133 + Gm25439 snoRNA snoRNA MGP_C3HHeJ_T0011008.1 MGP_C3HHeJ_G0009141.1 mouse_genomes_project 9 109554969 109555089 - Gm24083 miRNA miRNA MGP_C3HHeJ_T0094874.1 MGP_C3HHeJ_G0035137.1 mouse_genomes_project 9 123767689 123780694 + MGP_C3HHeJ_P0094874 Ackr2 protein_coding protein_coding MGP_C3HHeJ_T0091575.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42745336 42834184 - MGP_C3HHeJ_P0091575 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091576.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42745337 42834124 - MGP_C3HHeJ_P0091576 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091577.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42745342 42748550 - Cbl protein_coding processed_transcript MGP_C3HHeJ_T0091578.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42752785 42834131 - MGP_C3HHeJ_P0091578 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091579.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42754064 42834119 - MGP_C3HHeJ_P0091579 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091580.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42755700 42756900 - MGP_C3HHeJ_P0091580 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091581.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42756259 42756873 - Cbl protein_coding retained_intron MGP_C3HHeJ_T0091582.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42756419 42759699 - Cbl protein_coding retained_intron MGP_C3HHeJ_T0091583.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42762841 42766686 - MGP_C3HHeJ_P0091583 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091584.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42771574 42789767 - Cbl protein_coding processed_transcript MGP_C3HHeJ_T0091585.1 MGP_C3HHeJ_G0034377.1 mouse_genomes_project 9 42775924 42833679 - MGP_C3HHeJ_P0091585 Cbl protein_coding protein_coding MGP_C3HHeJ_T0091810.1 MGP_C3HHeJ_G0034451.1 mouse_genomes_project 9 47864296 47890771 + MGP_C3HHeJ_P0091810 Zw10 protein_coding protein_coding MGP_C3HHeJ_T0092198.1 MGP_C3HHeJ_G0034575.1 mouse_genomes_project 9 57725854 57743448 - MGP_C3HHeJ_P0092198 Cd276 protein_coding protein_coding MGP_C3HHeJ_T0092199.1 MGP_C3HHeJ_G0034575.1 mouse_genomes_project 9 57725856 57757691 - MGP_C3HHeJ_P0092199 Cd276 protein_coding protein_coding MGP_C3HHeJ_T0010947.1 MGP_C3HHeJ_G0009080.1 mouse_genomes_project 9 6770510 6770611 - Gm26195 miRNA miRNA MGP_C3HHeJ_T0005478.1 MGP_C3HHeJ_G0004614.1 mouse_genomes_project 9 112873494 112874108 + Gm43236 antisense antisense MGP_C3HHeJ_T0094200.1 MGP_C3HHeJ_G0034987.1 mouse_genomes_project 9 109535511 109552259 + MGP_C3HHeJ_P0094200 Impdh2 protein_coding protein_coding MGP_C3HHeJ_T0094201.1 MGP_C3HHeJ_G0034987.1 mouse_genomes_project 9 109542275 109552069 + MGP_C3HHeJ_P0094201 Impdh2 protein_coding protein_coding MGP_C3HHeJ_T0094202.1 MGP_C3HHeJ_G0034987.1 mouse_genomes_project 9 109542409 109543311 + Impdh2 protein_coding retained_intron MGP_C3HHeJ_T0094203.1 MGP_C3HHeJ_G0034987.1 mouse_genomes_project 9 109546535 109550045 + Impdh2 protein_coding retained_intron MGP_C3HHeJ_T0094204.1 MGP_C3HHeJ_G0034987.1 mouse_genomes_project 9 109551874 109552244 + Impdh2 protein_coding retained_intron MGP_C3HHeJ_T0094205.1 MGP_C3HHeJ_G0034987.1 mouse_genomes_project 9 109551878 109552239 + Impdh2 protein_coding retained_intron MGP_C3HHeJ_T0002386.1 MGP_C3HHeJ_G0002304.1 mouse_genomes_project 9 99817642 99819397 - TEC TEC MGP_C3HHeJ_T0002345.1 MGP_C3HHeJ_G0002264.1 mouse_genomes_project 9 72855720 72857564 + TEC TEC MGP_C3HHeJ_T0094524.1 MGP_C3HHeJ_G0035041.1 mouse_genomes_project 9 112092967 112097978 + MGP_C3HHeJ_P0094524 Prss44 protein_coding protein_coding MGP_C3HHeJ_T0094525.1 MGP_C3HHeJ_G0035041.1 mouse_genomes_project 9 112093000 112104483 + MGP_C3HHeJ_P0094525 Prss44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094526.1 MGP_C3HHeJ_G0035041.1 mouse_genomes_project 9 112094428 112096507 + MGP_C3HHeJ_P0094526 Prss44 protein_coding protein_coding MGP_C3HHeJ_T0094527.1 MGP_C3HHeJ_G0035041.1 mouse_genomes_project 9 112095194 112096927 + Prss44 protein_coding retained_intron MGP_C3HHeJ_T0010973.1 MGP_C3HHeJ_G0009106.1 mouse_genomes_project 9 44645357 44645427 - Mir7087 miRNA miRNA MGP_C3HHeJ_T0094505.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111924796 111979959 + MGP_C3HHeJ_P0094505 Ccdc12 protein_coding protein_coding MGP_C3HHeJ_T0094506.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111924818 111925972 + Ccdc12 protein_coding retained_intron MGP_C3HHeJ_T0094507.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111924823 111969524 + Ccdc12 protein_coding retained_intron MGP_C3HHeJ_T0094508.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111924831 111979608 + MGP_C3HHeJ_P0094508 Ccdc12 protein_coding protein_coding MGP_C3HHeJ_T0094509.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111924835 111977090 + Ccdc12 protein_coding retained_intron MGP_C3HHeJ_T0094510.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111924905 111979866 + Ccdc12 protein_coding processed_transcript MGP_C3HHeJ_T0094511.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111936003 111979638 + Ccdc12 protein_coding processed_transcript MGP_C3HHeJ_T0094512.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111978246 111979940 + MGP_C3HHeJ_P0094512 Ccdc12 protein_coding protein_coding MGP_C3HHeJ_T0094513.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111978363 111979946 + Ccdc12 protein_coding retained_intron MGP_C3HHeJ_T0094514.1 MGP_C3HHeJ_G0035037.1 mouse_genomes_project 9 111978396 111979817 + Ccdc12 protein_coding retained_intron MGP_C3HHeJ_T0091496.1 MGP_C3HHeJ_G0034351.1 mouse_genomes_project 9 39145833 39225908 + Clmp protein_coding processed_transcript MGP_C3HHeJ_T0091497.1 MGP_C3HHeJ_G0034351.1 mouse_genomes_project 9 39145884 39253698 + MGP_C3HHeJ_P0091497 Clmp protein_coding protein_coding MGP_C3HHeJ_T0091498.1 MGP_C3HHeJ_G0034351.1 mouse_genomes_project 9 39145907 39226031 + Clmp protein_coding retained_intron MGP_C3HHeJ_T0091499.1 MGP_C3HHeJ_G0034351.1 mouse_genomes_project 9 39242892 39250861 + Clmp protein_coding processed_transcript MGP_C3HHeJ_T0094910.1 MGP_C3HHeJ_G0035153.1 mouse_genomes_project 9 124914636 124916743 + MGP_C3HHeJ_P0094910 Tmem42 protein_coding protein_coding MGP_C3HHeJ_T0018275.1 MGP_C3HHeJ_G0015492.1 mouse_genomes_project 9 18745966 18755085 + Gm16754 processed_transcript antisense MGP_C3HHeJ_T0018276.1 MGP_C3HHeJ_G0015492.1 mouse_genomes_project 9 18745966 18747009 + Gm16754 processed_transcript retained_intron MGP_C3HHeJ_T0018277.1 MGP_C3HHeJ_G0015492.1 mouse_genomes_project 9 18745998 18755492 + Gm16754 processed_transcript antisense MGP_C3HHeJ_T0092065.1 MGP_C3HHeJ_G0034533.1 mouse_genomes_project 9 55474172 55553565 + MGP_C3HHeJ_P0092065 Hmg20a protein_coding unknown_likely_coding MGP_C3HHeJ_T0090838.1 MGP_C3HHeJ_G0034055.1 mouse_genomes_project 9 15611207 15632927 + MGP_C3HHeJ_P0090838 Chordc1 protein_coding protein_coding MGP_C3HHeJ_T0011642.1 MGP_C3HHeJ_G0009775.1 mouse_genomes_project 9 42977814 42978091 + Gm22141 misc_RNA misc_RNA MGP_C3HHeJ_T0092820.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75242164 75265205 - Mapk6 protein_coding processed_transcript MGP_C3HHeJ_T0092821.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75259991 75287424 - MGP_C3HHeJ_P0092821 Mapk6 protein_coding protein_coding MGP_C3HHeJ_T0092822.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75259993 75288070 - MGP_C3HHeJ_P0092822 Mapk6 protein_coding protein_coding MGP_C3HHeJ_T0092823.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75269259 75273778 - Mapk6 protein_coding retained_intron MGP_C3HHeJ_T0092824.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75269904 75288061 - Mapk6 protein_coding retained_intron MGP_C3HHeJ_T0092825.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75275421 75287648 - Mapk6 protein_coding processed_transcript MGP_C3HHeJ_T0092826.1 MGP_C3HHeJ_G0034720.1 mouse_genomes_project 9 75275574 75288050 - Mapk6 protein_coding processed_transcript MGP_C3HHeJ_T0092919.1 MGP_C3HHeJ_G0034751.1 mouse_genomes_project 9 78552158 78553080 - MGP_C3HHeJ_P0092919 Gm17324 protein_coding protein_coding MGP_C3HHeJ_T0091465.1 MGP_C3HHeJ_G0034337.1 mouse_genomes_project 9 38380496 38381432 + MGP_C3HHeJ_P0091465 Olfr978 protein_coding protein_coding MGP_C3HHeJ_T0005383.1 MGP_C3HHeJ_G0004547.1 mouse_genomes_project 9 56923566 56979602 + antisense antisense MGP_C3HHeJ_T0005384.1 MGP_C3HHeJ_G0004547.1 mouse_genomes_project 9 56971594 56979936 + antisense antisense MGP_C3HHeJ_T0005385.1 MGP_C3HHeJ_G0004547.1 mouse_genomes_project 9 56972988 56979841 + antisense antisense MGP_C3HHeJ_T0015890.1 MGP_C3HHeJ_G0013994.1 mouse_genomes_project 9 86023660 86024468 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091926.1 MGP_C3HHeJ_G0034486.1 mouse_genomes_project 9 50868193 50888428 - MGP_C3HHeJ_P0091926 Fdx1 protein_coding protein_coding MGP_C3HHeJ_T0092435.1 MGP_C3HHeJ_G0034640.1 mouse_genomes_project 9 64955369 64971850 + MGP_C3HHeJ_P0092435 Rasl12 protein_coding protein_coding MGP_C3HHeJ_T0092436.1 MGP_C3HHeJ_G0034640.1 mouse_genomes_project 9 64955369 64969851 + MGP_C3HHeJ_P0092436 Rasl12 protein_coding protein_coding MGP_C3HHeJ_T0093145.1 MGP_C3HHeJ_G0034796.1 mouse_genomes_project 9 89486668 89487643 + MGP_C3HHeJ_P0093145 protein_coding protein_coding MGP_C3HHeJ_T0100995.1 MGP_C3HHeJ_G0039189.1 mouse_genomes_project 9 97975273 97975400 - Gm25607 snoRNA snoRNA MGP_C3HHeJ_T0091401.1 MGP_C3HHeJ_G0034285.1 mouse_genomes_project 9 36815780 36816713 + MGP_C3HHeJ_P0091401 Olfr907 protein_coding protein_coding MGP_C3HHeJ_T0091691.1 MGP_C3HHeJ_G0034414.1 mouse_genomes_project 9 43773469 43787339 + MGP_C3HHeJ_P0091691 Scn2b protein_coding protein_coding MGP_C3HHeJ_T0091692.1 MGP_C3HHeJ_G0034414.1 mouse_genomes_project 9 43773474 43787337 + MGP_C3HHeJ_P0091692 Scn2b protein_coding protein_coding MGP_C3HHeJ_T0090652.1 MGP_C3HHeJ_G0033995.1 mouse_genomes_project 9 2227509 2236278 + MGP_C3HHeJ_P0090652 Casp1 protein_coding protein_coding MGP_C3HHeJ_T0090958.1 MGP_C3HHeJ_G0034115.1 mouse_genomes_project 9 18512347 18518983 + MGP_C3HHeJ_P0090958 Mrpl4 protein_coding protein_coding MGP_C3HHeJ_T0090959.1 MGP_C3HHeJ_G0034115.1 mouse_genomes_project 9 18512526 18518987 + MGP_C3HHeJ_P0090959 Mrpl4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091220.1 MGP_C3HHeJ_G0034210.1 mouse_genomes_project 9 33132097 33185692 - MGP_C3HHeJ_P0091220 Dcps protein_coding protein_coding MGP_C3HHeJ_T0091221.1 MGP_C3HHeJ_G0034210.1 mouse_genomes_project 9 33132101 33185690 - MGP_C3HHeJ_P0091221 Dcps protein_coding protein_coding MGP_C3HHeJ_T0091222.1 MGP_C3HHeJ_G0034210.1 mouse_genomes_project 9 33133996 33185624 - MGP_C3HHeJ_P0091222 Dcps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100961.1 MGP_C3HHeJ_G0039155.1 mouse_genomes_project 9 37905642 37905769 - Gm24278 snoRNA snoRNA MGP_C3HHeJ_T0092075.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56157579 56174997 + MGP_C3HHeJ_P0092075 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092076.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56160877 56216073 + MGP_C3HHeJ_P0092076 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092077.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56161915 56216071 + MGP_C3HHeJ_P0092077 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092078.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56161938 56216073 + MGP_C3HHeJ_P0092078 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092079.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56162167 56181532 + MGP_C3HHeJ_P0092079 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092080.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56166697 56216073 + MGP_C3HHeJ_P0092080 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092081.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56172081 56216073 + MGP_C3HHeJ_P0092081 Sin3a protein_coding protein_coding MGP_C3HHeJ_T0092082.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56181376 56184009 + Sin3a protein_coding retained_intron MGP_C3HHeJ_T0092083.1 MGP_C3HHeJ_G0034541.1 mouse_genomes_project 9 56200949 56212895 + Sin3a protein_coding retained_intron MGP_C3HHeJ_T0005355.1 MGP_C3HHeJ_G0004529.1 mouse_genomes_project 9 32936014 32947386 - Kirrel3os antisense antisense MGP_C3HHeJ_T0090772.1 MGP_C3HHeJ_G0034033.1 mouse_genomes_project 9 11701936 11711892 + MGP_C3HHeJ_P0090772 Cwc15 protein_coding protein_coding MGP_C3HHeJ_T0005405.1 MGP_C3HHeJ_G0004562.1 mouse_genomes_project 9 75806439 75918536 - Gm26903 antisense antisense MGP_C3HHeJ_T0015953.1 MGP_C3HHeJ_G0014057.1 mouse_genomes_project 9 118711898 118712260 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009161.1 MGP_C3HHeJ_G0007356.1 mouse_genomes_project 9 56662708 56669039 - Gm26631 lincRNA lincRNA MGP_C3HHeJ_T0002426.1 MGP_C3HHeJ_G0002344.1 mouse_genomes_project 9 109907950 109908489 - TEC TEC MGP_C3HHeJ_T0092818.1 MGP_C3HHeJ_G0034718.1 mouse_genomes_project 9 75182889 75217639 + MGP_C3HHeJ_P0092818 Gnb5 protein_coding protein_coding MGP_C3HHeJ_T0094875.1 MGP_C3HHeJ_G0035138.1 mouse_genomes_project 9 123783978 123785928 - MGP_C3HHeJ_P0094875 Cyp8b1 protein_coding protein_coding MGP_C3HHeJ_T0094782.1 MGP_C3HHeJ_G0035112.1 mouse_genomes_project 9 121749568 121761732 - MGP_C3HHeJ_P0094782 Csrnp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0015910.1 MGP_C3HHeJ_G0014014.1 mouse_genomes_project 9 93079910 93080724 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094386.1 MGP_C3HHeJ_G0035023.1 mouse_genomes_project 9 111066959 111085407 + MGP_C3HHeJ_P0094386 Cdc25a protein_coding protein_coding MGP_C3HHeJ_T0094387.1 MGP_C3HHeJ_G0035023.1 mouse_genomes_project 9 111067320 111073066 + MGP_C3HHeJ_P0094387 Cdc25a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094388.1 MGP_C3HHeJ_G0035023.1 mouse_genomes_project 9 111067686 111084160 + MGP_C3HHeJ_P0094388 Cdc25a protein_coding protein_coding MGP_C3HHeJ_T0094390.1 MGP_C3HHeJ_G0035023.1 mouse_genomes_project 9 111075842 111081513 + Cdc25a protein_coding retained_intron MGP_C3HHeJ_T0094391.1 MGP_C3HHeJ_G0035023.1 mouse_genomes_project 9 111079228 111083880 + Cdc25a protein_coding retained_intron MGP_C3HHeJ_T0094392.1 MGP_C3HHeJ_G0035023.1 mouse_genomes_project 9 111080348 111080883 + Cdc25a protein_coding retained_intron MGP_C3HHeJ_T0015861.1 MGP_C3HHeJ_G0013965.1 mouse_genomes_project 9 72892068 72892375 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091109.1 MGP_C3HHeJ_G0034176.1 mouse_genomes_project 9 22386593 22440973 - MGP_C3HHeJ_P0091109 Tbx20 protein_coding protein_coding MGP_C3HHeJ_T0091110.1 MGP_C3HHeJ_G0034176.1 mouse_genomes_project 9 22407075 22440973 - MGP_C3HHeJ_P0091110 Tbx20 protein_coding protein_coding MGP_C3HHeJ_T0002384.1 MGP_C3HHeJ_G0002302.1 mouse_genomes_project 9 99036125 99037305 + TEC TEC MGP_C3HHeJ_T0100989.1 MGP_C3HHeJ_G0039183.1 mouse_genomes_project 9 86003409 86003539 - Gm22830 snoRNA snoRNA MGP_C3HHeJ_T0094776.1 MGP_C3HHeJ_G0035109.1 mouse_genomes_project 9 121670279 121701878 + MGP_C3HHeJ_P0094776 Wdr48 protein_coding protein_coding MGP_C3HHeJ_T0093737.1 MGP_C3HHeJ_G0034916.1 mouse_genomes_project 9 107375339 107377317 - MGP_C3HHeJ_P0093737 Gpr62 protein_coding protein_coding MGP_C3HHeJ_T0091399.1 MGP_C3HHeJ_G0034283.1 mouse_genomes_project 9 36777457 36779493 + MGP_C3HHeJ_P0091399 Olfr905 protein_coding protein_coding MGP_C3HHeJ_T0092622.1 MGP_C3HHeJ_G0034682.1 mouse_genomes_project 9 70187292 70261824 - MGP_C3HHeJ_P0092622 Rnf111 protein_coding protein_coding MGP_C3HHeJ_T0092623.1 MGP_C3HHeJ_G0034682.1 mouse_genomes_project 9 70187293 70261454 - MGP_C3HHeJ_P0092623 Rnf111 protein_coding protein_coding MGP_C3HHeJ_T0092624.1 MGP_C3HHeJ_G0034682.1 mouse_genomes_project 9 70188853 70233364 - MGP_C3HHeJ_P0092624 Rnf111 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009194.1 MGP_C3HHeJ_G0007383.1 mouse_genomes_project 9 81317431 81344984 + Gm26713 lincRNA lincRNA MGP_C3HHeJ_T0092917.1 MGP_C3HHeJ_G0034750.1 mouse_genomes_project 9 78536373 78547369 - MGP_C3HHeJ_P0092917 Mb21d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092918.1 MGP_C3HHeJ_G0034750.1 mouse_genomes_project 9 78537509 78547562 - MGP_C3HHeJ_P0092918 Mb21d1 protein_coding protein_coding MGP_C3HHeJ_T0094154.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109456158 109467222 + MGP_C3HHeJ_P0094154 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094155.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109456396 109467860 + MGP_C3HHeJ_P0094155 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094156.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109456401 109467840 + MGP_C3HHeJ_P0094156 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094157.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109456401 109467840 + MGP_C3HHeJ_P0094157 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094158.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109456412 109467840 + MGP_C3HHeJ_P0094158 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094159.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109458219 109460451 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094160.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109458993 109459761 + MGP_C3HHeJ_P0094160 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094161.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109459868 109460721 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094162.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109459897 109460984 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094163.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109460158 109467222 + MGP_C3HHeJ_P0094163 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094164.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109461059 109461986 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094165.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109461869 109464080 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094166.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109462511 109464242 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094167.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109462611 109464720 + MGP_C3HHeJ_P0094167 Usp19 protein_coding protein_coding MGP_C3HHeJ_T0094168.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109464225 109465143 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0094169.1 MGP_C3HHeJ_G0034984.1 mouse_genomes_project 9 109465672 109467220 + Usp19 protein_coding retained_intron MGP_C3HHeJ_T0092977.1 MGP_C3HHeJ_G0034763.1 mouse_genomes_project 9 82034645 82378407 + MGP_C3HHeJ_P0092977 Mei4 protein_coding protein_coding MGP_C3HHeJ_T0092978.1 MGP_C3HHeJ_G0034763.1 mouse_genomes_project 9 82062025 82197825 + MGP_C3HHeJ_P0092978 Mei4 protein_coding protein_coding MGP_C3HHeJ_T0092335.1 MGP_C3HHeJ_G0034608.1 mouse_genomes_project 9 62276680 62287815 + MGP_C3HHeJ_P0092335 Calml4 protein_coding protein_coding MGP_C3HHeJ_T0092336.1 MGP_C3HHeJ_G0034608.1 mouse_genomes_project 9 62276680 62287815 + MGP_C3HHeJ_P0092336 Calml4 protein_coding protein_coding MGP_C3HHeJ_T0091825.1 MGP_C3HHeJ_G0034458.1 mouse_genomes_project 9 48357288 48402104 + MGP_C3HHeJ_P0091825 Gm11149 protein_coding protein_coding MGP_C3HHeJ_T0093393.1 MGP_C3HHeJ_G0034853.1 mouse_genomes_project 9 99958186 100010827 - MGP_C3HHeJ_P0093393 Mras protein_coding protein_coding MGP_C3HHeJ_T0093394.1 MGP_C3HHeJ_G0034853.1 mouse_genomes_project 9 99960693 100010327 - MGP_C3HHeJ_P0093394 Mras protein_coding protein_coding MGP_C3HHeJ_T0093395.1 MGP_C3HHeJ_G0034853.1 mouse_genomes_project 9 99960744 99999343 - MGP_C3HHeJ_P0093395 Mras protein_coding protein_coding MGP_C3HHeJ_T0093396.1 MGP_C3HHeJ_G0034853.1 mouse_genomes_project 9 99962498 99967461 - Mras protein_coding retained_intron MGP_C3HHeJ_T0093397.1 MGP_C3HHeJ_G0034853.1 mouse_genomes_project 9 99965605 99974850 - Mras protein_coding retained_intron MGP_C3HHeJ_T0093398.1 MGP_C3HHeJ_G0034853.1 mouse_genomes_project 9 99965766 99993599 - MGP_C3HHeJ_P0093398 Mras protein_coding protein_coding MGP_C3HHeJ_T0092524.1 MGP_C3HHeJ_G0034660.1 mouse_genomes_project 9 66336944 66390105 + MGP_C3HHeJ_P0092524 Car12 protein_coding protein_coding MGP_C3HHeJ_T0092525.1 MGP_C3HHeJ_G0034660.1 mouse_genomes_project 9 66336985 66377729 + Car12 protein_coding retained_intron MGP_C3HHeJ_T0092526.1 MGP_C3HHeJ_G0034660.1 mouse_genomes_project 9 66336986 66371179 + Car12 protein_coding retained_intron MGP_C3HHeJ_T0092527.1 MGP_C3HHeJ_G0034660.1 mouse_genomes_project 9 66336988 66390102 + MGP_C3HHeJ_P0092527 Car12 protein_coding protein_coding MGP_C3HHeJ_T0092528.1 MGP_C3HHeJ_G0034660.1 mouse_genomes_project 9 66371010 66387577 + MGP_C3HHeJ_P0092528 Car12 protein_coding protein_coding MGP_C3HHeJ_T0091428.1 MGP_C3HHeJ_G0034306.1 mouse_genomes_project 9 37381994 37382930 - MGP_C3HHeJ_P0091428 Olfr936 protein_coding protein_coding MGP_C3HHeJ_T0009230.1 MGP_C3HHeJ_G0007410.1 mouse_genomes_project 9 100960285 100962175 - Gm28167 lincRNA lincRNA MGP_C3HHeJ_T0090969.1 MGP_C3HHeJ_G0034124.1 mouse_genomes_project 9 18680283 18731468 + MGP_C3HHeJ_P0090969 Pde4a protein_coding protein_coding MGP_C3HHeJ_T0090970.1 MGP_C3HHeJ_G0034124.1 mouse_genomes_project 9 18697055 18729847 + Pde4a protein_coding retained_intron MGP_C3HHeJ_T0090971.1 MGP_C3HHeJ_G0034124.1 mouse_genomes_project 9 18699540 18710240 + Pde4a protein_coding retained_intron MGP_C3HHeJ_T0090972.1 MGP_C3HHeJ_G0034124.1 mouse_genomes_project 9 18699542 18729847 + MGP_C3HHeJ_P0090972 Pde4a protein_coding protein_coding MGP_C3HHeJ_T0090973.1 MGP_C3HHeJ_G0034124.1 mouse_genomes_project 9 18708938 18711503 + Pde4a protein_coding retained_intron MGP_C3HHeJ_T0090974.1 MGP_C3HHeJ_G0034124.1 mouse_genomes_project 9 18713420 18729847 + MGP_C3HHeJ_P0090974 Pde4a protein_coding protein_coding MGP_C3HHeJ_T0094840.1 MGP_C3HHeJ_G0035129.1 mouse_genomes_project 9 123537489 123563745 - MGP_C3HHeJ_P0094840 Sec22c protein_coding protein_coding MGP_C3HHeJ_T0094841.1 MGP_C3HHeJ_G0035129.1 mouse_genomes_project 9 123541218 123564181 - MGP_C3HHeJ_P0094841 Sec22c protein_coding protein_coding MGP_C3HHeJ_T0094842.1 MGP_C3HHeJ_G0035129.1 mouse_genomes_project 9 123542745 123563695 - MGP_C3HHeJ_P0094842 Sec22c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094843.1 MGP_C3HHeJ_G0035129.1 mouse_genomes_project 9 123546382 123548640 - Sec22c protein_coding retained_intron MGP_C3HHeJ_T0094844.1 MGP_C3HHeJ_G0035129.1 mouse_genomes_project 9 123553782 123564206 - MGP_C3HHeJ_P0094844 Sec22c protein_coding protein_coding MGP_C3HHeJ_T0099683.1 MGP_C3HHeJ_G0037877.1 mouse_genomes_project 9 33486002 33486164 + Gm25630 snRNA snRNA MGP_C3HHeJ_T0002335.1 MGP_C3HHeJ_G0002254.1 mouse_genomes_project 9 72187608 72190361 + TEC TEC MGP_C3HHeJ_T0015901.1 MGP_C3HHeJ_G0014005.1 mouse_genomes_project 9 90536330 90538580 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005360.1 MGP_C3HHeJ_G0004534.1 mouse_genomes_project 9 41003326 41034779 + Gm16322 antisense antisense MGP_C3HHeJ_T0005361.1 MGP_C3HHeJ_G0004534.1 mouse_genomes_project 9 41004345 41031528 + Gm16322 antisense antisense MGP_C3HHeJ_T0092406.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64218968 64241260 - MGP_C3HHeJ_P0092406 Rab11a protein_coding protein_coding MGP_C3HHeJ_T0092407.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64219070 64228229 - Rab11a protein_coding retained_intron MGP_C3HHeJ_T0092408.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64219171 64229219 - MGP_C3HHeJ_P0092408 Rab11a protein_coding protein_coding MGP_C3HHeJ_T0092409.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64219235 64228962 - Rab11a protein_coding processed_transcript MGP_C3HHeJ_T0092410.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64219314 64241141 - MGP_C3HHeJ_P0092410 Rab11a protein_coding protein_coding MGP_C3HHeJ_T0092411.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64219408 64241141 - MGP_C3HHeJ_P0092411 Rab11a protein_coding protein_coding MGP_C3HHeJ_T0092412.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64219418 64241270 - MGP_C3HHeJ_P0092412 Rab11a protein_coding protein_coding MGP_C3HHeJ_T0092413.1 MGP_C3HHeJ_G0034626.1 mouse_genomes_project 9 64229199 64240028 - Rab11a protein_coding processed_transcript MGP_C3HHeJ_T0009245.1 MGP_C3HHeJ_G0007423.1 mouse_genomes_project 9 108523239 108523706 + Gm38150 lincRNA lincRNA MGP_C3HHeJ_T0091805.1 MGP_C3HHeJ_G0034448.1 mouse_genomes_project 9 47700666 47713608 - MGP_C3HHeJ_P0091805 Htr3a protein_coding unknown_likely_coding MGP_C3HHeJ_T0091806.1 MGP_C3HHeJ_G0034448.1 mouse_genomes_project 9 47700673 47713742 - MGP_C3HHeJ_P0091806 Htr3a protein_coding protein_coding MGP_C3HHeJ_T0002357.1 MGP_C3HHeJ_G0002276.1 mouse_genomes_project 9 85553777 85555627 - TEC TEC MGP_C3HHeJ_T0009261.1 MGP_C3HHeJ_G0007432.1 mouse_genomes_project 9 119561955 119570030 + Gm26614 lincRNA lincRNA MGP_C3HHeJ_T0002437.1 MGP_C3HHeJ_G0002355.1 mouse_genomes_project 9 120090948 120091786 - TEC TEC MGP_C3HHeJ_T0009181.1 MGP_C3HHeJ_G0007371.1 mouse_genomes_project 9 72330454 72345977 - 4930509E16Rik lincRNA lincRNA MGP_C3HHeJ_T0011022.1 MGP_C3HHeJ_G0009155.1 mouse_genomes_project 9 124559961 124560060 + Mir138-1 miRNA miRNA MGP_C3HHeJ_T0093842.1 MGP_C3HHeJ_G0034938.1 mouse_genomes_project 9 108470511 108473991 + MGP_C3HHeJ_P0093842 Nprl2 protein_coding protein_coding MGP_C3HHeJ_T0093843.1 MGP_C3HHeJ_G0034938.1 mouse_genomes_project 9 108470526 108472919 + MGP_C3HHeJ_P0093843 Nprl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093844.1 MGP_C3HHeJ_G0034938.1 mouse_genomes_project 9 108470530 108473980 + Nprl2 protein_coding retained_intron MGP_C3HHeJ_T0093845.1 MGP_C3HHeJ_G0034938.1 mouse_genomes_project 9 108470546 108471973 + Nprl2 protein_coding retained_intron MGP_C3HHeJ_T0093846.1 MGP_C3HHeJ_G0034938.1 mouse_genomes_project 9 108472261 108472745 + Nprl2 protein_coding retained_intron MGP_C3HHeJ_T0005350.1 MGP_C3HHeJ_G0004524.1 mouse_genomes_project 9 21960196 21964315 - Gm15600 antisense antisense MGP_C3HHeJ_T0091756.1 MGP_C3HHeJ_G0034431.1 mouse_genomes_project 9 44936598 44938497 + MGP_C3HHeJ_P0091756 Apoa1 protein_coding protein_coding MGP_C3HHeJ_T0091757.1 MGP_C3HHeJ_G0034431.1 mouse_genomes_project 9 44936739 44938004 + Apoa1 protein_coding retained_intron MGP_C3HHeJ_T0094758.1 MGP_C3HHeJ_G0035102.1 mouse_genomes_project 9 121090133 121093210 + MGP_C3HHeJ_P0094758 protein_coding protein_coding MGP_C3HHeJ_T0094760.1 MGP_C3HHeJ_G0035102.1 mouse_genomes_project 9 121091504 121099417 + MGP_C3HHeJ_P0094760 protein_coding protein_coding MGP_C3HHeJ_T0094761.1 MGP_C3HHeJ_G0035102.1 mouse_genomes_project 9 121091871 121102834 + protein_coding retained_intron MGP_C3HHeJ_T0094762.1 MGP_C3HHeJ_G0035102.1 mouse_genomes_project 9 121097679 121100389 + protein_coding retained_intron MGP_C3HHeJ_T0094147.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109445292 109445938 + MGP_C3HHeJ_P0094147 Lamb2 protein_coding protein_coding MGP_C3HHeJ_T0094148.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109445413 109456087 + MGP_C3HHeJ_P0094148 Lamb2 protein_coding protein_coding MGP_C3HHeJ_T0094149.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109445428 109446210 + MGP_C3HHeJ_P0094149 Lamb2 protein_coding protein_coding MGP_C3HHeJ_T0094150.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109445434 109446143 + MGP_C3HHeJ_P0094150 Lamb2 protein_coding protein_coding MGP_C3HHeJ_T0094151.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109445437 109445741 + Lamb2 protein_coding retained_intron MGP_C3HHeJ_T0094152.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109453374 109454228 + Lamb2 protein_coding retained_intron MGP_C3HHeJ_T0094153.1 MGP_C3HHeJ_G0034983.1 mouse_genomes_project 9 109454433 109455089 + Lamb2 protein_coding retained_intron MGP_C3HHeJ_T0093420.1 MGP_C3HHeJ_G0034859.1 mouse_genomes_project 9 100484779 100486852 - MGP_C3HHeJ_P0093420 Sox14 protein_coding protein_coding MGP_C3HHeJ_T0093421.1 MGP_C3HHeJ_G0034859.1 mouse_genomes_project 9 100484893 100486338 - MGP_C3HHeJ_P0093421 Sox14 protein_coding protein_coding MGP_C3HHeJ_T0009147.1 MGP_C3HHeJ_G0007345.1 mouse_genomes_project 9 42711926 42723425 + Gm26737 lincRNA lincRNA MGP_C3HHeJ_T0093573.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104917578 105024470 - MGP_C3HHeJ_P0093573 Dnajc13 protein_coding protein_coding MGP_C3HHeJ_T0093574.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104918348 104919793 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093575.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104918469 104923459 - Dnajc13 protein_coding processed_transcript MGP_C3HHeJ_T0093576.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104918563 104923717 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093577.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104918613 105008370 - MGP_C3HHeJ_P0093577 Dnajc13 protein_coding protein_coding MGP_C3HHeJ_T0093578.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104919614 105024463 - MGP_C3HHeJ_P0093578 Dnajc13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093579.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104923448 104929388 - MGP_C3HHeJ_P0093579 Dnajc13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093580.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104928700 104931676 - MGP_C3HHeJ_P0093580 Dnajc13 protein_coding protein_coding MGP_C3HHeJ_T0093581.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104931385 104934632 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093582.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104948630 104953532 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093583.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104955666 104968181 - MGP_C3HHeJ_P0093583 Dnajc13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093584.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104959081 104967081 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093585.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104962621 104969577 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093586.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104988928 104989568 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0093587.1 MGP_C3HHeJ_G0034890.1 mouse_genomes_project 9 104998095 105024443 - Dnajc13 protein_coding retained_intron MGP_C3HHeJ_T0094435.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111342569 111379618 + MGP_C3HHeJ_P0094435 Smarcc1 protein_coding protein_coding MGP_C3HHeJ_T0094436.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111361418 111480726 + MGP_C3HHeJ_P0094436 Smarcc1 protein_coding protein_coding MGP_C3HHeJ_T0094437.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111361475 111452047 + Smarcc1 protein_coding retained_intron MGP_C3HHeJ_T0094438.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111361475 111480726 + MGP_C3HHeJ_P0094438 Smarcc1 protein_coding protein_coding MGP_C3HHeJ_T0094439.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111361475 111421084 + MGP_C3HHeJ_P0094439 Smarcc1 protein_coding protein_coding MGP_C3HHeJ_T0094440.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111361475 111474844 + MGP_C3HHeJ_P0094440 Smarcc1 protein_coding protein_coding MGP_C3HHeJ_T0094441.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111422512 111444337 + Smarcc1 protein_coding retained_intron MGP_C3HHeJ_T0094442.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111474460 111476948 + MGP_C3HHeJ_P0094442 Smarcc1 protein_coding protein_coding MGP_C3HHeJ_T0094443.1 MGP_C3HHeJ_G0035026.1 mouse_genomes_project 9 111475941 111476939 + Smarcc1 protein_coding retained_intron MGP_C3HHeJ_T0018278.1 MGP_C3HHeJ_G0015493.1 mouse_genomes_project 9 33122937 33138611 + 4930581F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018279.1 MGP_C3HHeJ_G0015493.1 mouse_genomes_project 9 33122976 33125960 + 4930581F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018280.1 MGP_C3HHeJ_G0015493.1 mouse_genomes_project 9 33125104 33131330 + 4930581F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018281.1 MGP_C3HHeJ_G0015493.1 mouse_genomes_project 9 33125671 33134080 + 4930581F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018282.1 MGP_C3HHeJ_G0015493.1 mouse_genomes_project 9 33125755 33131758 + 4930581F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018283.1 MGP_C3HHeJ_G0015493.1 mouse_genomes_project 9 33125885 33134587 + 4930581F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0002367.1 MGP_C3HHeJ_G0002285.1 mouse_genomes_project 9 88965534 88971136 - TEC TEC MGP_C3HHeJ_T0094799.1 MGP_C3HHeJ_G0035119.1 mouse_genomes_project 9 122104374 122281784 + MGP_C3HHeJ_P0094799 Myrip protein_coding protein_coding MGP_C3HHeJ_T0094800.1 MGP_C3HHeJ_G0035119.1 mouse_genomes_project 9 122191643 122230701 + MGP_C3HHeJ_P0094800 Myrip protein_coding protein_coding MGP_C3HHeJ_T0094801.1 MGP_C3HHeJ_G0035119.1 mouse_genomes_project 9 122215991 122223248 + Myrip protein_coding processed_transcript MGP_C3HHeJ_T0094802.1 MGP_C3HHeJ_G0035119.1 mouse_genomes_project 9 122233445 122238519 + Myrip protein_coding processed_transcript MGP_C3HHeJ_T0091014.1 MGP_C3HHeJ_G0034136.1 mouse_genomes_project 9 19064206 19087639 + MGP_C3HHeJ_P0091014 AB124611 protein_coding protein_coding MGP_C3HHeJ_T0091015.1 MGP_C3HHeJ_G0034136.1 mouse_genomes_project 9 19064231 19087632 + MGP_C3HHeJ_P0091015 AB124611 protein_coding protein_coding MGP_C3HHeJ_T0091016.1 MGP_C3HHeJ_G0034136.1 mouse_genomes_project 9 19064258 19087637 + MGP_C3HHeJ_P0091016 AB124611 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091017.1 MGP_C3HHeJ_G0034136.1 mouse_genomes_project 9 19064295 19087099 + MGP_C3HHeJ_P0091017 AB124611 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094033.1 MGP_C3HHeJ_G0034963.1 mouse_genomes_project 9 108938541 108992417 + Gm20662 protein_coding retained_intron MGP_C3HHeJ_T0094038.1 MGP_C3HHeJ_G0034963.1 mouse_genomes_project 9 108940181 108976422 + MGP_C3HHeJ_P0094038 Gm20662 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094039.1 MGP_C3HHeJ_G0034963.1 mouse_genomes_project 9 108940219 108976414 + MGP_C3HHeJ_P0094039 Gm20662 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092428.1 MGP_C3HHeJ_G0034636.1 mouse_genomes_project 9 64838263 64875508 + MGP_C3HHeJ_P0092428 Clpx protein_coding protein_coding MGP_C3HHeJ_T0092429.1 MGP_C3HHeJ_G0034636.1 mouse_genomes_project 9 64838298 64875509 + MGP_C3HHeJ_P0092429 Clpx protein_coding protein_coding MGP_C3HHeJ_T0092430.1 MGP_C3HHeJ_G0034636.1 mouse_genomes_project 9 64838335 64854310 + Clpx protein_coding retained_intron MGP_C3HHeJ_T0092431.1 MGP_C3HHeJ_G0034636.1 mouse_genomes_project 9 64855213 64863450 + MGP_C3HHeJ_P0092431 Clpx protein_coding protein_coding MGP_C3HHeJ_T0091469.1 MGP_C3HHeJ_G0034341.1 mouse_genomes_project 9 38484167 38485133 + MGP_C3HHeJ_P0091469 Olfr982 protein_coding protein_coding MGP_C3HHeJ_T0092530.1 MGP_C3HHeJ_G0034662.1 mouse_genomes_project 9 66425630 66427666 + MGP_C3HHeJ_P0092530 Gm10647 protein_coding protein_coding MGP_C3HHeJ_T0092943.1 MGP_C3HHeJ_G0034758.1 mouse_genomes_project 9 79941585 80104732 - MGP_C3HHeJ_P0092943 Filip1 protein_coding protein_coding MGP_C3HHeJ_T0092944.1 MGP_C3HHeJ_G0034758.1 mouse_genomes_project 9 79941591 79957840 - Filip1 protein_coding processed_transcript MGP_C3HHeJ_T0092945.1 MGP_C3HHeJ_G0034758.1 mouse_genomes_project 9 79947195 80088929 - MGP_C3HHeJ_P0092945 Filip1 protein_coding protein_coding MGP_C3HHeJ_T0091588.1 MGP_C3HHeJ_G0034380.1 mouse_genomes_project 9 42853410 42868781 - MGP_C3HHeJ_P0091588 Nlrx1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091617.1 MGP_C3HHeJ_G0034392.1 mouse_genomes_project 9 43018577 43026402 - MGP_C3HHeJ_P0091617 Ccdc84 protein_coding protein_coding MGP_C3HHeJ_T0015843.1 MGP_C3HHeJ_G0013947.1 mouse_genomes_project 9 59051130 59051622 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005367.1 MGP_C3HHeJ_G0004539.1 mouse_genomes_project 9 49365087 49384189 - Plet1os antisense antisense MGP_C3HHeJ_T0005368.1 MGP_C3HHeJ_G0004539.1 mouse_genomes_project 9 49365091 49381185 - Plet1os antisense antisense MGP_C3HHeJ_T0091310.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34955007 34975292 - MGP_C3HHeJ_P0091310 Ei24 protein_coding protein_coding MGP_C3HHeJ_T0091311.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34955007 34975209 - MGP_C3HHeJ_P0091311 Ei24 protein_coding protein_coding MGP_C3HHeJ_T0091312.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34955726 34959036 - Ei24 protein_coding retained_intron MGP_C3HHeJ_T0091313.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34956023 34958541 - Ei24 protein_coding retained_intron MGP_C3HHeJ_T0091314.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34958604 34963722 - Ei24 protein_coding retained_intron MGP_C3HHeJ_T0091315.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34963313 34974956 - MGP_C3HHeJ_P0091315 Ei24 protein_coding protein_coding MGP_C3HHeJ_T0091316.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34963322 34968202 - MGP_C3HHeJ_P0091316 Ei24 protein_coding protein_coding MGP_C3HHeJ_T0091317.1 MGP_C3HHeJ_G0034239.1 mouse_genomes_project 9 34964231 34975297 - MGP_C3HHeJ_P0091317 Ei24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009253.1 MGP_C3HHeJ_G0007427.1 mouse_genomes_project 9 111537637 111542625 - Gm42775 lincRNA lincRNA MGP_C3HHeJ_T0091628.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316946 43358734 - MGP_C3HHeJ_P0091628 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091629.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316950 43358713 - MGP_C3HHeJ_P0091629 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091630.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316950 43346259 - MGP_C3HHeJ_P0091630 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091631.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316950 43366819 - MGP_C3HHeJ_P0091631 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091632.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316950 43343883 - MGP_C3HHeJ_P0091632 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091633.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316950 43343908 - MGP_C3HHeJ_P0091633 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091634.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316952 43347016 - MGP_C3HHeJ_P0091634 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091635.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316952 43332367 - MGP_C3HHeJ_P0091635 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091636.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43316952 43358734 - MGP_C3HHeJ_P0091636 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091637.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43318276 43328479 - Phldb1 protein_coding retained_intron MGP_C3HHeJ_T0091638.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43325097 43327065 - Phldb1 protein_coding retained_intron MGP_C3HHeJ_T0091639.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43328367 43334742 - MGP_C3HHeJ_P0091639 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091640.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43331595 43341590 - MGP_C3HHeJ_P0091640 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091641.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43334206 43339061 - MGP_C3HHeJ_P0091641 Phldb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091642.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43346759 43352058 - MGP_C3HHeJ_P0091642 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091643.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43346929 43352021 - MGP_C3HHeJ_P0091643 Phldb1 protein_coding protein_coding MGP_C3HHeJ_T0091644.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43348967 43357984 - Phldb1 protein_coding retained_intron MGP_C3HHeJ_T0091645.1 MGP_C3HHeJ_G0034399.1 mouse_genomes_project 9 43356643 43357120 - Phldb1 protein_coding processed_transcript MGP_C3HHeJ_T0005401.1 MGP_C3HHeJ_G0004559.1 mouse_genomes_project 9 72247270 72247960 - Gm27231 antisense antisense MGP_C3HHeJ_T0091817.1 MGP_C3HHeJ_G0034454.1 mouse_genomes_project 9 48162597 48238058 + MGP_C3HHeJ_P0091817 Drd2 protein_coding protein_coding MGP_C3HHeJ_T0005463.1 MGP_C3HHeJ_G0004602.1 mouse_genomes_project 9 108487061 108496668 - Gm9917 antisense antisense MGP_C3HHeJ_T0005464.1 MGP_C3HHeJ_G0004602.1 mouse_genomes_project 9 108491089 108496671 - Gm9917 antisense antisense MGP_C3HHeJ_T0005465.1 MGP_C3HHeJ_G0004602.1 mouse_genomes_project 9 108491995 108495180 - Gm9917 antisense antisense MGP_C3HHeJ_T0005466.1 MGP_C3HHeJ_G0004602.1 mouse_genomes_project 9 108492599 108495036 - Gm9917 antisense antisense MGP_C3HHeJ_T0091130.1 MGP_C3HHeJ_G0034183.1 mouse_genomes_project 9 24643704 24688596 - MGP_C3HHeJ_P0091130 Gm1110 protein_coding protein_coding MGP_C3HHeJ_T0091168.1 MGP_C3HHeJ_G0034195.1 mouse_genomes_project 9 28822675 28843696 + MGP_C3HHeJ_P0091168 Adamts8 protein_coding protein_coding MGP_C3HHeJ_T0091169.1 MGP_C3HHeJ_G0034195.1 mouse_genomes_project 9 28823571 28844678 + MGP_C3HHeJ_P0091169 Adamts8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091796.1 MGP_C3HHeJ_G0034444.1 mouse_genomes_project 9 47276510 47283158 - MGP_C3HHeJ_P0091796 Rbm7 protein_coding protein_coding MGP_C3HHeJ_T0009212.1 MGP_C3HHeJ_G0007397.1 mouse_genomes_project 9 92692854 92696015 - Gm29139 lincRNA lincRNA MGP_C3HHeJ_T0002336.1 MGP_C3HHeJ_G0002255.1 mouse_genomes_project 9 72246952 72250176 + TEC TEC MGP_C3HHeJ_T0009163.1 MGP_C3HHeJ_G0007358.1 mouse_genomes_project 9 57568723 57572403 + 1700072B07Rik lincRNA lincRNA MGP_C3HHeJ_T0091381.1 MGP_C3HHeJ_G0034265.1 mouse_genomes_project 9 36340054 36340984 + MGP_C3HHeJ_P0091381 Olfr885 protein_coding protein_coding MGP_C3HHeJ_T0091450.1 MGP_C3HHeJ_G0034322.1 mouse_genomes_project 9 37992151 37993218 + MGP_C3HHeJ_P0091450 Olfr960 protein_coding protein_coding MGP_C3HHeJ_T0010981.1 MGP_C3HHeJ_G0009114.1 mouse_genomes_project 9 57410349 57410454 + Mir6385 miRNA miRNA MGP_C3HHeJ_T0090964.1 MGP_C3HHeJ_G0034120.1 mouse_genomes_project 9 18578905 18584900 - MGP_C3HHeJ_P0090964 Fdx1l protein_coding protein_coding MGP_C3HHeJ_T0094896.1 MGP_C3HHeJ_G0035145.1 mouse_genomes_project 9 124620587 124676677 + MGP_C3HHeJ_P0094896 Topaz1 protein_coding protein_coding MGP_C3HHeJ_T0091272.1 MGP_C3HHeJ_G0034221.1 mouse_genomes_project 9 33624261 33629275 - MGP_C3HHeJ_P0091272 Pate4 protein_coding protein_coding MGP_C3HHeJ_T0090811.1 MGP_C3HHeJ_G0034047.1 mouse_genomes_project 9 12558215 12564106 + MGP_C3HHeJ_P0090811 Taf1d protein_coding protein_coding MGP_C3HHeJ_T0090812.1 MGP_C3HHeJ_G0034047.1 mouse_genomes_project 9 12558215 12564106 + MGP_C3HHeJ_P0090812 Taf1d protein_coding protein_coding MGP_C3HHeJ_T0092997.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83297807 83298685 - Hmgn3 protein_coding processed_transcript MGP_C3HHeJ_T0092998.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83297807 83334927 - MGP_C3HHeJ_P0092998 Hmgn3 protein_coding protein_coding MGP_C3HHeJ_T0092999.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83297807 83334712 - MGP_C3HHeJ_P0092999 Hmgn3 protein_coding protein_coding MGP_C3HHeJ_T0093000.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83297807 83334772 - MGP_C3HHeJ_P0093000 Hmgn3 protein_coding protein_coding MGP_C3HHeJ_T0093001.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83297807 83334847 - MGP_C3HHeJ_P0093001 Hmgn3 protein_coding protein_coding MGP_C3HHeJ_T0093002.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83297827 83298991 - Hmgn3 protein_coding retained_intron MGP_C3HHeJ_T0093003.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83298040 83300429 - Hmgn3 protein_coding retained_intron MGP_C3HHeJ_T0093004.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83298237 83334759 - MGP_C3HHeJ_P0093004 Hmgn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093005.1 MGP_C3HHeJ_G0034766.1 mouse_genomes_project 9 83298579 83298953 - Hmgn3 protein_coding retained_intron MGP_C3HHeJ_T0093078.1 MGP_C3HHeJ_G0034780.1 mouse_genomes_project 9 87001513 87017772 + MGP_C3HHeJ_P0093078 Prss35 protein_coding protein_coding MGP_C3HHeJ_T0093079.1 MGP_C3HHeJ_G0034780.1 mouse_genomes_project 9 87001513 87017943 + MGP_C3HHeJ_P0093079 Prss35 protein_coding protein_coding MGP_C3HHeJ_T0093304.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97179941 97250561 - MGP_C3HHeJ_P0093304 Zbtb38 protein_coding protein_coding MGP_C3HHeJ_T0093305.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97182573 97228548 - MGP_C3HHeJ_P0093305 Zbtb38 protein_coding protein_coding MGP_C3HHeJ_T0093306.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97183405 97216846 - MGP_C3HHeJ_P0093306 Zbtb38 protein_coding non_stop_decay MGP_C3HHeJ_T0093307.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97184545 97217296 - MGP_C3HHeJ_P0093307 Zbtb38 protein_coding protein_coding MGP_C3HHeJ_T0093308.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97185624 97216561 - MGP_C3HHeJ_P0093308 Zbtb38 protein_coding protein_coding MGP_C3HHeJ_T0093309.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97215205 97225910 - Zbtb38 protein_coding processed_transcript MGP_C3HHeJ_T0093310.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97226724 97250415 - Zbtb38 protein_coding retained_intron MGP_C3HHeJ_T0093311.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97226724 97228216 - Zbtb38 protein_coding processed_transcript MGP_C3HHeJ_T0093312.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97228333 97229643 - Zbtb38 protein_coding processed_transcript MGP_C3HHeJ_T0093313.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97228430 97229542 - Zbtb38 protein_coding retained_intron MGP_C3HHeJ_T0093314.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97245008 97250457 - Zbtb38 protein_coding retained_intron MGP_C3HHeJ_T0093315.1 MGP_C3HHeJ_G0034830.1 mouse_genomes_project 9 97245210 97250423 - Zbtb38 protein_coding processed_transcript MGP_C3HHeJ_T0005483.1 MGP_C3HHeJ_G0004619.1 mouse_genomes_project 9 120602992 120641167 - Gm2415 antisense antisense MGP_C3HHeJ_T0005484.1 MGP_C3HHeJ_G0004619.1 mouse_genomes_project 9 120603075 120641177 - Gm2415 antisense antisense MGP_C3HHeJ_T0005485.1 MGP_C3HHeJ_G0004619.1 mouse_genomes_project 9 120616575 120641166 - Gm2415 antisense antisense MGP_C3HHeJ_T0005486.1 MGP_C3HHeJ_G0004619.1 mouse_genomes_project 9 120638181 120641363 - Gm2415 antisense antisense MGP_C3HHeJ_T0093876.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108507191 108511806 + MGP_C3HHeJ_P0093876 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093877.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108507191 108511806 + MGP_C3HHeJ_P0093877 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093878.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108507191 108511806 + MGP_C3HHeJ_P0093878 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093879.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108507191 108511806 + MGP_C3HHeJ_P0093879 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093880.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108507191 108511806 + MGP_C3HHeJ_P0093880 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093881.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108507191 108511806 + MGP_C3HHeJ_P0093881 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093883.1 MGP_C3HHeJ_G0034944.1 mouse_genomes_project 9 108508425 108512337 + MGP_C3HHeJ_P0093883 Nat6 protein_coding protein_coding MGP_C3HHeJ_T0093377.1 MGP_C3HHeJ_G0034850.1 mouse_genomes_project 9 99805222 99813057 - MGP_C3HHeJ_P0093377 Faiml protein_coding protein_coding MGP_C3HHeJ_T0093378.1 MGP_C3HHeJ_G0034850.1 mouse_genomes_project 9 99805314 99812188 - MGP_C3HHeJ_P0093378 Faiml protein_coding protein_coding MGP_C3HHeJ_T0009232.1 MGP_C3HHeJ_G0007412.1 mouse_genomes_project 9 102031196 102037011 + Gm28979 lincRNA lincRNA MGP_C3HHeJ_T0090805.1 MGP_C3HHeJ_G0034043.1 mouse_genomes_project 9 12280829 12341392 - MGP_C3HHeJ_P0090805 Hephl1 protein_coding protein_coding MGP_C3HHeJ_T0018364.1 MGP_C3HHeJ_G0015522.1 mouse_genomes_project 9 115879924 115899109 + processed_transcript processed_transcript MGP_C3HHeJ_T0018365.1 MGP_C3HHeJ_G0015522.1 mouse_genomes_project 9 115879945 115898326 + processed_transcript processed_transcript MGP_C3HHeJ_T0018366.1 MGP_C3HHeJ_G0015522.1 mouse_genomes_project 9 115880037 115882573 + processed_transcript processed_transcript MGP_C3HHeJ_T0091530.1 MGP_C3HHeJ_G0034361.1 mouse_genomes_project 9 41047240 41488190 - MGP_C3HHeJ_P0091530 Grik4 protein_coding protein_coding MGP_C3HHeJ_T0091531.1 MGP_C3HHeJ_G0034361.1 mouse_genomes_project 9 41050994 41351223 - MGP_C3HHeJ_P0091531 Grik4 protein_coding protein_coding MGP_C3HHeJ_T0093812.1 MGP_C3HHeJ_G0034932.1 mouse_genomes_project 9 108213556 108219489 + MGP_C3HHeJ_P0093812 Cish protein_coding protein_coding MGP_C3HHeJ_T0093813.1 MGP_C3HHeJ_G0034932.1 mouse_genomes_project 9 108214239 108220287 + MGP_C3HHeJ_P0093813 Cish protein_coding protein_coding MGP_C3HHeJ_T0093814.1 MGP_C3HHeJ_G0034932.1 mouse_genomes_project 9 108214436 108219445 + Cish protein_coding processed_transcript MGP_C3HHeJ_T0093815.1 MGP_C3HHeJ_G0034932.1 mouse_genomes_project 9 108214441 108218053 + MGP_C3HHeJ_P0093815 Cish protein_coding protein_coding MGP_C3HHeJ_T0093816.1 MGP_C3HHeJ_G0034932.1 mouse_genomes_project 9 108216657 108217960 + Cish protein_coding processed_transcript MGP_C3HHeJ_T0091077.1 MGP_C3HHeJ_G0034163.1 mouse_genomes_project 9 19815101 19842752 + MGP_C3HHeJ_P0091077 Zfp809 protein_coding protein_coding MGP_C3HHeJ_T0015826.1 MGP_C3HHeJ_G0013930.1 mouse_genomes_project 9 32195271 32195833 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091505.1 MGP_C3HHeJ_G0034355.1 mouse_genomes_project 9 39454036 39465719 - MGP_C3HHeJ_P0091505 Crtam protein_coding protein_coding MGP_C3HHeJ_T0091506.1 MGP_C3HHeJ_G0034355.1 mouse_genomes_project 9 39454079 39485413 - MGP_C3HHeJ_P0091506 Crtam protein_coding protein_coding MGP_C3HHeJ_T0091507.1 MGP_C3HHeJ_G0034355.1 mouse_genomes_project 9 39454081 39485413 - MGP_C3HHeJ_P0091507 Crtam protein_coding protein_coding MGP_C3HHeJ_T0091508.1 MGP_C3HHeJ_G0034355.1 mouse_genomes_project 9 39454082 39485455 - MGP_C3HHeJ_P0091508 Crtam protein_coding protein_coding MGP_C3HHeJ_T0011006.1 MGP_C3HHeJ_G0009139.1 mouse_genomes_project 9 109030266 109030352 + Mir7088 miRNA miRNA MGP_C3HHeJ_T0009262.1 MGP_C3HHeJ_G0007433.1 mouse_genomes_project 9 119830928 119853496 + Gm17399 lincRNA lincRNA MGP_C3HHeJ_T0091819.1 MGP_C3HHeJ_G0034456.1 mouse_genomes_project 9 48271735 48322281 - MGP_C3HHeJ_P0091819 Ttc12 protein_coding protein_coding MGP_C3HHeJ_T0091820.1 MGP_C3HHeJ_G0034456.1 mouse_genomes_project 9 48293306 48322271 - Ttc12 protein_coding retained_intron MGP_C3HHeJ_T0005427.1 MGP_C3HHeJ_G0004576.1 mouse_genomes_project 9 96425425 96443543 - Gm16794 antisense antisense MGP_C3HHeJ_T0005428.1 MGP_C3HHeJ_G0004576.1 mouse_genomes_project 9 96426311 96438791 - Gm16794 antisense antisense MGP_C3HHeJ_T0005429.1 MGP_C3HHeJ_G0004576.1 mouse_genomes_project 9 96428362 96438800 - Gm16794 antisense antisense MGP_C3HHeJ_T0005430.1 MGP_C3HHeJ_G0004576.1 mouse_genomes_project 9 96429049 96439549 - Gm16794 antisense antisense MGP_C3HHeJ_T0005375.1 MGP_C3HHeJ_G0004542.1 mouse_genomes_project 9 52626133 52640823 + Gm16124 antisense antisense MGP_C3HHeJ_T0100939.1 MGP_C3HHeJ_G0039133.1 mouse_genomes_project 9 2034116 2034251 + Gm24896 snoRNA snoRNA MGP_C3HHeJ_T0091964.1 MGP_C3HHeJ_G0034502.1 mouse_genomes_project 9 52882378 52943138 - MGP_C3HHeJ_P0091964 Elmod1 protein_coding protein_coding MGP_C3HHeJ_T0091965.1 MGP_C3HHeJ_G0034502.1 mouse_genomes_project 9 52882378 52908936 - MGP_C3HHeJ_P0091965 Elmod1 protein_coding protein_coding MGP_C3HHeJ_T0100941.1 MGP_C3HHeJ_G0039135.1 mouse_genomes_project 9 12565803 12565934 + Gm24455 snoRNA snoRNA MGP_C3HHeJ_T0091618.1 MGP_C3HHeJ_G0034393.1 mouse_genomes_project 9 43047412 43054048 - MGP_C3HHeJ_P0091618 Foxr1 protein_coding protein_coding MGP_C3HHeJ_T0091348.1 MGP_C3HHeJ_G0034247.1 mouse_genomes_project 9 35650187 35653376 - Robo3 protein_coding retained_intron MGP_C3HHeJ_T0091349.1 MGP_C3HHeJ_G0034247.1 mouse_genomes_project 9 35650563 35657113 - Robo3 protein_coding retained_intron MGP_C3HHeJ_T0091350.1 MGP_C3HHeJ_G0034247.1 mouse_genomes_project 9 35650563 35667661 - MGP_C3HHeJ_P0091350 Robo3 protein_coding protein_coding MGP_C3HHeJ_T0091351.1 MGP_C3HHeJ_G0034247.1 mouse_genomes_project 9 35650563 35664644 - MGP_C3HHeJ_P0091351 Robo3 protein_coding protein_coding MGP_C3HHeJ_T0091352.1 MGP_C3HHeJ_G0034247.1 mouse_genomes_project 9 35650680 35664644 - Robo3 protein_coding retained_intron MGP_C3HHeJ_T0091353.1 MGP_C3HHeJ_G0034247.1 mouse_genomes_project 9 35651923 35653303 - Robo3 protein_coding retained_intron MGP_C3HHeJ_T0090685.1 MGP_C3HHeJ_G0034004.1 mouse_genomes_project 9 4475155 4485919 + MGP_C3HHeJ_P0090685 Mmp3 protein_coding protein_coding MGP_C3HHeJ_T0100955.1 MGP_C3HHeJ_G0039149.1 mouse_genomes_project 9 23242325 23242434 - Gm25861 snoRNA snoRNA MGP_C3HHeJ_T0092072.1 MGP_C3HHeJ_G0034538.1 mouse_genomes_project 9 56011076 56012000 + MGP_C3HHeJ_P0092072 Imp3 protein_coding protein_coding MGP_C3HHeJ_T0009201.1 MGP_C3HHeJ_G0007388.1 mouse_genomes_project 9 84979615 84991501 + 4930554C24Rik lincRNA lincRNA MGP_C3HHeJ_T0015862.1 MGP_C3HHeJ_G0013966.1 mouse_genomes_project 9 73523537 73523697 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015847.1 MGP_C3HHeJ_G0013951.1 mouse_genomes_project 9 64841532 64841920 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002415.1 MGP_C3HHeJ_G0002333.1 mouse_genomes_project 9 106583238 106583863 + TEC TEC MGP_C3HHeJ_T0094830.1 MGP_C3HHeJ_G0035125.1 mouse_genomes_project 9 123204620 123297860 + MGP_C3HHeJ_P0094830 Trak1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094831.1 MGP_C3HHeJ_G0035125.1 mouse_genomes_project 9 123208683 123318157 + MGP_C3HHeJ_P0094831 Trak1 protein_coding protein_coding MGP_C3HHeJ_T0009121.1 MGP_C3HHeJ_G0007320.1 mouse_genomes_project 9 10385990 10386393 - Gm29176 lincRNA lincRNA MGP_C3HHeJ_T0090864.1 MGP_C3HHeJ_G0034069.1 mouse_genomes_project 9 16349955 16350894 + MGP_C3HHeJ_P0090864 Olfr834 protein_coding protein_coding MGP_C3HHeJ_T0009257.1 MGP_C3HHeJ_G0007431.1 mouse_genomes_project 9 113570184 113571922 + 2900079G21Rik lincRNA lincRNA MGP_C3HHeJ_T0009258.1 MGP_C3HHeJ_G0007431.1 mouse_genomes_project 9 113570201 113628917 + 2900079G21Rik lincRNA lincRNA MGP_C3HHeJ_T0009259.1 MGP_C3HHeJ_G0007431.1 mouse_genomes_project 9 113570288 113571920 + 2900079G21Rik lincRNA lincRNA MGP_C3HHeJ_T0009260.1 MGP_C3HHeJ_G0007431.1 mouse_genomes_project 9 113594675 113700527 + 2900079G21Rik lincRNA lincRNA MGP_C3HHeJ_T0099690.1 MGP_C3HHeJ_G0037884.1 mouse_genomes_project 9 45353204 45353311 - Gm22805 snRNA snRNA MGP_C3HHeJ_T0092125.1 MGP_C3HHeJ_G0034555.1 mouse_genomes_project 9 56734112 56740387 - MGP_C3HHeJ_P0092125 Cplx3 protein_coding protein_coding MGP_C3HHeJ_T0092658.1 MGP_C3HHeJ_G0034693.1 mouse_genomes_project 9 71408944 71561165 - MGP_C3HHeJ_P0092658 Cgnl1 protein_coding protein_coding MGP_C3HHeJ_T0092659.1 MGP_C3HHeJ_G0034693.1 mouse_genomes_project 9 71408944 71561165 - MGP_C3HHeJ_P0092659 Cgnl1 protein_coding protein_coding MGP_C3HHeJ_T0092660.1 MGP_C3HHeJ_G0034693.1 mouse_genomes_project 9 71411293 71413549 - Cgnl1 protein_coding retained_intron MGP_C3HHeJ_T0092661.1 MGP_C3HHeJ_G0034693.1 mouse_genomes_project 9 71411645 71561123 - MGP_C3HHeJ_P0092661 Cgnl1 protein_coding protein_coding MGP_C3HHeJ_T0092662.1 MGP_C3HHeJ_G0034693.1 mouse_genomes_project 9 71412775 71413770 - Cgnl1 protein_coding retained_intron MGP_C3HHeJ_T0092663.1 MGP_C3HHeJ_G0034693.1 mouse_genomes_project 9 71415043 71430789 - Cgnl1 protein_coding processed_transcript MGP_C3HHeJ_T0011643.1 MGP_C3HHeJ_G0009776.1 mouse_genomes_project 9 53512411 53512629 + Gm25980 misc_RNA misc_RNA MGP_C3HHeJ_T0002355.1 MGP_C3HHeJ_G0002274.1 mouse_genomes_project 9 83301998 83304803 + TEC TEC MGP_C3HHeJ_T0015944.1 MGP_C3HHeJ_G0014048.1 mouse_genomes_project 9 108109127 108110396 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091429.1 MGP_C3HHeJ_G0034307.1 mouse_genomes_project 9 37396132 37397068 - MGP_C3HHeJ_P0091429 Olfr937 protein_coding protein_coding MGP_C3HHeJ_T0092492.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65682442 65720452 - MGP_C3HHeJ_P0092492 Snx1 protein_coding protein_coding MGP_C3HHeJ_T0092493.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65683433 65685657 - Snx1 protein_coding retained_intron MGP_C3HHeJ_T0092494.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65688496 65690891 - Snx1 protein_coding retained_intron MGP_C3HHeJ_T0092495.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65690858 65695993 - Snx1 protein_coding retained_intron MGP_C3HHeJ_T0092496.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65691705 65722155 - MGP_C3HHeJ_P0092496 Snx1 protein_coding protein_coding MGP_C3HHeJ_T0092497.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65698597 65699850 - Snx1 protein_coding retained_intron MGP_C3HHeJ_T0092498.1 MGP_C3HHeJ_G0034655.1 mouse_genomes_project 9 65703280 65720363 - Snx1 protein_coding retained_intron MGP_C3HHeJ_T0100951.1 MGP_C3HHeJ_G0039145.1 mouse_genomes_project 9 18394590 18394675 + Gm24067 snoRNA snoRNA MGP_C3HHeJ_T0090721.1 MGP_C3HHeJ_G0034017.1 mouse_genomes_project 9 5266896 5280660 + MGP_C3HHeJ_P0090721 1700128F08Rik protein_coding protein_coding MGP_C3HHeJ_T0015899.1 MGP_C3HHeJ_G0014003.1 mouse_genomes_project 9 90332913 90333560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091112.1 MGP_C3HHeJ_G0034178.1 mouse_genomes_project 9 22944912 23001151 + MGP_C3HHeJ_P0091112 Sept7 protein_coding protein_coding MGP_C3HHeJ_T0091113.1 MGP_C3HHeJ_G0034178.1 mouse_genomes_project 9 22944912 23001151 + MGP_C3HHeJ_P0091113 Sept7 protein_coding protein_coding MGP_C3HHeJ_T0092238.1 MGP_C3HHeJ_G0034586.1 mouse_genomes_project 9 58894047 58929995 + MGP_C3HHeJ_P0092238 Parp6 protein_coding protein_coding MGP_C3HHeJ_T0092049.1 MGP_C3HHeJ_G0034529.1 mouse_genomes_project 9 55082170 55104982 + MGP_C3HHeJ_P0092049 Rcn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092050.1 MGP_C3HHeJ_G0034529.1 mouse_genomes_project 9 55082182 55102177 + MGP_C3HHeJ_P0092050 Rcn2 protein_coding protein_coding MGP_C3HHeJ_T0092051.1 MGP_C3HHeJ_G0034529.1 mouse_genomes_project 9 55082195 55084553 + Rcn2 protein_coding retained_intron MGP_C3HHeJ_T0092052.1 MGP_C3HHeJ_G0034529.1 mouse_genomes_project 9 55082210 55096194 + Rcn2 protein_coding retained_intron MGP_C3HHeJ_T0002361.1 MGP_C3HHeJ_G0002279.1 mouse_genomes_project 9 86939661 86940820 - TEC TEC MGP_C3HHeJ_T0092646.1 MGP_C3HHeJ_G0034689.1 mouse_genomes_project 9 70988396 71068802 + MGP_C3HHeJ_P0092646 Aldh1a2 protein_coding protein_coding MGP_C3HHeJ_T0091869.1 MGP_C3HHeJ_G0034471.1 mouse_genomes_project 9 49637997 49639280 - MGP_C3HHeJ_P0091869 Hspb2 protein_coding protein_coding MGP_C3HHeJ_T0093610.1 MGP_C3HHeJ_G0034896.1 mouse_genomes_project 9 105994039 106246897 - MGP_C3HHeJ_P0093610 Nek11 protein_coding protein_coding MGP_C3HHeJ_T0093611.1 MGP_C3HHeJ_G0034896.1 mouse_genomes_project 9 105995268 106244394 - MGP_C3HHeJ_P0093611 Nek11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093612.1 MGP_C3HHeJ_G0034896.1 mouse_genomes_project 9 106088402 106246660 - MGP_C3HHeJ_P0093612 Nek11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093613.1 MGP_C3HHeJ_G0034896.1 mouse_genomes_project 9 106143026 106246631 - MGP_C3HHeJ_P0093613 Nek11 protein_coding protein_coding MGP_C3HHeJ_T0092281.1 MGP_C3HHeJ_G0034594.1 mouse_genomes_project 9 60032116 60051040 + MGP_C3HHeJ_P0092281 Larp6 protein_coding protein_coding MGP_C3HHeJ_T0015842.1 MGP_C3HHeJ_G0013946.1 mouse_genomes_project 9 58746160 58746635 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092066.1 MGP_C3HHeJ_G0034534.1 mouse_genomes_project 9 55680737 55750429 - MGP_C3HHeJ_P0092066 Lingo1 protein_coding protein_coding MGP_C3HHeJ_T0092067.1 MGP_C3HHeJ_G0034534.1 mouse_genomes_project 9 55681350 55697903 - MGP_C3HHeJ_P0092067 Lingo1 protein_coding protein_coding MGP_C3HHeJ_T0092068.1 MGP_C3HHeJ_G0034534.1 mouse_genomes_project 9 55681367 55710863 - MGP_C3HHeJ_P0092068 Lingo1 protein_coding protein_coding MGP_C3HHeJ_T0009130.1 MGP_C3HHeJ_G0007329.1 mouse_genomes_project 9 22869328 22869775 + Gm29375 lincRNA lincRNA MGP_C3HHeJ_T0094803.1 MGP_C3HHeJ_G0035120.1 mouse_genomes_project 9 122300173 122304285 + MGP_C3HHeJ_P0094803 Eif1b protein_coding protein_coding MGP_C3HHeJ_T0099674.1 MGP_C3HHeJ_G0037868.1 mouse_genomes_project 9 10507447 10507554 + Gm26189 snRNA snRNA MGP_C3HHeJ_T0091052.1 MGP_C3HHeJ_G0034151.1 mouse_genomes_project 9 19524286 19528964 - MGP_C3HHeJ_P0091052 Epor protein_coding protein_coding MGP_C3HHeJ_T0091053.1 MGP_C3HHeJ_G0034151.1 mouse_genomes_project 9 19524446 19528028 - MGP_C3HHeJ_P0091053 Epor protein_coding unknown_likely_coding MGP_C3HHeJ_T0092445.1 MGP_C3HHeJ_G0034645.1 mouse_genomes_project 9 65114667 65142691 - MGP_C3HHeJ_P0092445 Plekho2 protein_coding protein_coding MGP_C3HHeJ_T0092437.1 MGP_C3HHeJ_G0034641.1 mouse_genomes_project 9 64969895 64980417 - MGP_C3HHeJ_P0092437 Slc51b protein_coding protein_coding MGP_C3HHeJ_T0091384.1 MGP_C3HHeJ_G0034268.1 mouse_genomes_project 9 36399749 36400785 + MGP_C3HHeJ_P0091384 Olfr889 protein_coding protein_coding MGP_C3HHeJ_T0015839.1 MGP_C3HHeJ_G0013943.1 mouse_genomes_project 9 54311291 54312384 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093294.1 MGP_C3HHeJ_G0034827.1 mouse_genomes_project 9 96820100 96852118 - MGP_C3HHeJ_P0093294 Atp1b3 protein_coding protein_coding MGP_C3HHeJ_T0093295.1 MGP_C3HHeJ_G0034827.1 mouse_genomes_project 9 96826098 96831003 - Atp1b3 protein_coding retained_intron MGP_C3HHeJ_T0093296.1 MGP_C3HHeJ_G0034827.1 mouse_genomes_project 9 96833438 96837020 - Atp1b3 protein_coding processed_transcript MGP_C3HHeJ_T0094040.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108944697 108995917 + MGP_C3HHeJ_P0094040 Ip6k1 protein_coding protein_coding MGP_C3HHeJ_T0094041.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108944825 108991994 + MGP_C3HHeJ_P0094041 Ip6k1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094042.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108944830 108992846 + Ip6k1 protein_coding processed_transcript MGP_C3HHeJ_T0094043.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108944839 108993244 + Ip6k1 protein_coding retained_intron MGP_C3HHeJ_T0094044.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108944842 108978530 + MGP_C3HHeJ_P0094044 Ip6k1 protein_coding protein_coding MGP_C3HHeJ_T0094045.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108944867 108988048 + MGP_C3HHeJ_P0094045 Ip6k1 protein_coding protein_coding MGP_C3HHeJ_T0094046.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108967744 108992742 + MGP_C3HHeJ_P0094046 Ip6k1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094047.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108967776 108976380 + Ip6k1 protein_coding processed_transcript MGP_C3HHeJ_T0094048.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108976348 108993278 + MGP_C3HHeJ_P0094048 Ip6k1 protein_coding protein_coding MGP_C3HHeJ_T0094049.1 MGP_C3HHeJ_G0034964.1 mouse_genomes_project 9 108992009 108992674 + MGP_C3HHeJ_P0094049 Ip6k1 protein_coding protein_coding MGP_C3HHeJ_T0093074.1 MGP_C3HHeJ_G0034779.1 mouse_genomes_project 9 86823771 86952771 - MGP_C3HHeJ_P0093074 Me1 protein_coding protein_coding MGP_C3HHeJ_T0093075.1 MGP_C3HHeJ_G0034779.1 mouse_genomes_project 9 86823806 86942883 - MGP_C3HHeJ_P0093075 Me1 protein_coding protein_coding MGP_C3HHeJ_T0093076.1 MGP_C3HHeJ_G0034779.1 mouse_genomes_project 9 86825129 86870793 - Me1 protein_coding processed_transcript MGP_C3HHeJ_T0093077.1 MGP_C3HHeJ_G0034779.1 mouse_genomes_project 9 86865609 86870826 - Me1 protein_coding processed_transcript MGP_C3HHeJ_T0090916.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18117014 18136397 - MGP_C3HHeJ_P0090916 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090917.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18117126 18138831 - Fbxl12 protein_coding processed_transcript MGP_C3HHeJ_T0090918.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18131853 18138839 - MGP_C3HHeJ_P0090918 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090919.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18131890 18133445 - MGP_C3HHeJ_P0090919 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090920.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18131890 18138831 - MGP_C3HHeJ_P0090920 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090921.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18131891 18138839 - MGP_C3HHeJ_P0090921 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090922.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18131893 18138851 - MGP_C3HHeJ_P0090922 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090923.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18131893 18136890 - MGP_C3HHeJ_P0090923 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090924.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18132905 18138842 - MGP_C3HHeJ_P0090924 Fbxl12 protein_coding protein_coding MGP_C3HHeJ_T0090925.1 MGP_C3HHeJ_G0034103.1 mouse_genomes_project 9 18135646 18138826 - Fbxl12 protein_coding retained_intron MGP_C3HHeJ_T0090668.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 3962068 4220750 - MGP_C3HHeJ_P0090668 Dync2h1 protein_coding protein_coding MGP_C3HHeJ_T0090669.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 3962068 4209728 - MGP_C3HHeJ_P0090669 Dync2h1 protein_coding protein_coding MGP_C3HHeJ_T0090670.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 3962869 4209639 - MGP_C3HHeJ_P0090670 Dync2h1 protein_coding protein_coding MGP_C3HHeJ_T0090671.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 3963030 4209711 - MGP_C3HHeJ_P0090671 Dync2h1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090672.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 3973767 3984805 - Dync2h1 protein_coding retained_intron MGP_C3HHeJ_T0090673.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 4057389 4137752 - MGP_C3HHeJ_P0090673 Dync2h1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090674.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 4174546 4209726 - Dync2h1 protein_coding retained_intron MGP_C3HHeJ_T0090675.1 MGP_C3HHeJ_G0034000.1 mouse_genomes_project 9 4181083 4209647 - MGP_C3HHeJ_P0090675 Dync2h1 protein_coding protein_coding MGP_C3HHeJ_T0018286.1 MGP_C3HHeJ_G0015495.1 mouse_genomes_project 9 39249200 39252564 - Gm16096 processed_transcript processed_transcript MGP_C3HHeJ_T0018287.1 MGP_C3HHeJ_G0015495.1 mouse_genomes_project 9 39249206 39251845 - Gm16096 processed_transcript processed_transcript MGP_C3HHeJ_T0091997.1 MGP_C3HHeJ_G0034515.1 mouse_genomes_project 9 53915519 53946521 + MGP_C3HHeJ_P0091997 Hykk protein_coding protein_coding MGP_C3HHeJ_T0091998.1 MGP_C3HHeJ_G0034515.1 mouse_genomes_project 9 53915547 53925768 + Hykk protein_coding retained_intron MGP_C3HHeJ_T0091999.1 MGP_C3HHeJ_G0034515.1 mouse_genomes_project 9 53915548 53934761 + Hykk protein_coding retained_intron MGP_C3HHeJ_T0092000.1 MGP_C3HHeJ_G0034515.1 mouse_genomes_project 9 53915583 53917477 + Hykk protein_coding processed_transcript MGP_C3HHeJ_T0092001.1 MGP_C3HHeJ_G0034515.1 mouse_genomes_project 9 53916038 53943726 + MGP_C3HHeJ_P0092001 Hykk protein_coding unknown_likely_coding MGP_C3HHeJ_T0018302.1 MGP_C3HHeJ_G0015497.1 mouse_genomes_project 9 42703827 42705487 - Gm20444 processed_transcript processed_transcript MGP_C3HHeJ_T0093366.1 MGP_C3HHeJ_G0034844.1 mouse_genomes_project 9 99398405 99401738 + MGP_C3HHeJ_P0093366 Prr23a3 protein_coding protein_coding MGP_C3HHeJ_T0099704.1 MGP_C3HHeJ_G0037898.1 mouse_genomes_project 9 66750273 66750421 + Gm22145 snRNA snRNA MGP_C3HHeJ_T0002377.1 MGP_C3HHeJ_G0002295.1 mouse_genomes_project 9 92121029 92121854 - TEC TEC MGP_C3HHeJ_T0002365.1 MGP_C3HHeJ_G0002283.1 mouse_genomes_project 9 87986247 87989047 + TEC TEC MGP_C3HHeJ_T0005395.1 MGP_C3HHeJ_G0004554.1 mouse_genomes_project 9 66469022 66469858 + Gm17098 antisense antisense MGP_C3HHeJ_T0002313.1 MGP_C3HHeJ_G0002232.1 mouse_genomes_project 9 30486504 30488315 - TEC TEC MGP_C3HHeJ_T0094865.1 MGP_C3HHeJ_G0035134.1 mouse_genomes_project 9 123647472 123656994 - MGP_C3HHeJ_P0094865 Hhatl protein_coding protein_coding MGP_C3HHeJ_T0094866.1 MGP_C3HHeJ_G0035134.1 mouse_genomes_project 9 123647478 123655524 - MGP_C3HHeJ_P0094866 Hhatl protein_coding protein_coding MGP_C3HHeJ_T0098210.1 MGP_C3HHeJ_G0036422.1 mouse_genomes_project 9 97046381 97046497 - n-R5s87 rRNA rRNA MGP_C3HHeJ_T0092475.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65503870 65634943 + MGP_C3HHeJ_P0092475 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092476.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65503920 65596143 + Csnk1g1 protein_coding retained_intron MGP_C3HHeJ_T0092477.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65503923 65638050 + MGP_C3HHeJ_P0092477 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092478.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65503932 65638056 + MGP_C3HHeJ_P0092478 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092479.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65503966 65552551 + MGP_C3HHeJ_P0092479 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092480.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65503976 65570358 + Csnk1g1 protein_coding retained_intron MGP_C3HHeJ_T0092481.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65504034 65633476 + MGP_C3HHeJ_P0092481 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092482.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65504389 65636112 + MGP_C3HHeJ_P0092482 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092483.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65519126 65623885 + MGP_C3HHeJ_P0092483 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092484.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65552239 65638046 + MGP_C3HHeJ_P0092484 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092485.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65599677 65625364 + MGP_C3HHeJ_P0092485 Csnk1g1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092486.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65601990 65604934 + Csnk1g1 protein_coding retained_intron MGP_C3HHeJ_T0092487.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65602014 65632765 + MGP_C3HHeJ_P0092487 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092488.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65602357 65623885 + MGP_C3HHeJ_P0092488 Csnk1g1 protein_coding protein_coding MGP_C3HHeJ_T0092489.1 MGP_C3HHeJ_G0034652.1 mouse_genomes_project 9 65629054 65632783 + Csnk1g1 protein_coding retained_intron MGP_C3HHeJ_T0090693.1 MGP_C3HHeJ_G0034010.1 mouse_genomes_project 9 4721100 4728596 + MGP_C3HHeJ_P0090693 Mmp7 protein_coding protein_coding MGP_C3HHeJ_T0094745.1 MGP_C3HHeJ_G0035096.1 mouse_genomes_project 9 120871596 120884855 - MGP_C3HHeJ_P0094745 Acaa1b protein_coding protein_coding MGP_C3HHeJ_T0005351.1 MGP_C3HHeJ_G0004525.1 mouse_genomes_project 9 22000057 22086499 + Gm10701 antisense antisense MGP_C3HHeJ_T0093234.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95913582 95973742 - MGP_C3HHeJ_P0093234 U2surp protein_coding protein_coding MGP_C3HHeJ_T0093235.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95917658 95973844 - MGP_C3HHeJ_P0093235 U2surp protein_coding protein_coding MGP_C3HHeJ_T0093236.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95918039 95973843 - MGP_C3HHeJ_P0093236 U2surp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093237.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95938051 95942263 - U2surp protein_coding retained_intron MGP_C3HHeJ_T0093238.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95949488 95973709 - MGP_C3HHeJ_P0093238 U2surp protein_coding unknown_likely_coding MGP_C3HHeJ_T0093239.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95954973 95973707 - MGP_C3HHeJ_P0093239 U2surp protein_coding protein_coding MGP_C3HHeJ_T0093240.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95955595 95973704 - MGP_C3HHeJ_P0093240 U2surp protein_coding protein_coding MGP_C3HHeJ_T0093241.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95963855 95973733 - U2surp protein_coding retained_intron MGP_C3HHeJ_T0093242.1 MGP_C3HHeJ_G0034818.1 mouse_genomes_project 9 95970881 95973727 - U2surp protein_coding retained_intron MGP_C3HHeJ_T0094282.1 MGP_C3HHeJ_G0034999.1 mouse_genomes_project 9 109867571 109868516 + MGP_C3HHeJ_P0094282 Tmem89 protein_coding protein_coding MGP_C3HHeJ_T0094283.1 MGP_C3HHeJ_G0034999.1 mouse_genomes_project 9 109867571 109868516 + MGP_C3HHeJ_P0094283 Tmem89 protein_coding protein_coding MGP_C3HHeJ_T0091544.1 MGP_C3HHeJ_G0034371.1 mouse_genomes_project 9 42661131 42712277 - MGP_C3HHeJ_P0091544 protein_coding protein_coding MGP_C3HHeJ_T0091554.1 MGP_C3HHeJ_G0034371.1 mouse_genomes_project 9 42690562 42709635 - MGP_C3HHeJ_P0091554 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091555.1 MGP_C3HHeJ_G0034371.1 mouse_genomes_project 9 42690574 42698179 - protein_coding processed_transcript MGP_C3HHeJ_T0093402.1 MGP_C3HHeJ_G0034855.1 mouse_genomes_project 9 100159151 100167898 + MGP_C3HHeJ_P0093402 Dbr1 protein_coding protein_coding MGP_C3HHeJ_T0093403.1 MGP_C3HHeJ_G0034855.1 mouse_genomes_project 9 100159180 100165794 + MGP_C3HHeJ_P0093403 Dbr1 protein_coding protein_coding MGP_C3HHeJ_T0093404.1 MGP_C3HHeJ_G0034855.1 mouse_genomes_project 9 100159432 100165402 + MGP_C3HHeJ_P0093404 Dbr1 protein_coding protein_coding MGP_C3HHeJ_T0093405.1 MGP_C3HHeJ_G0034855.1 mouse_genomes_project 9 100159460 100165411 + MGP_C3HHeJ_P0093405 Dbr1 protein_coding protein_coding MGP_C3HHeJ_T0093406.1 MGP_C3HHeJ_G0034855.1 mouse_genomes_project 9 100163554 100167235 + MGP_C3HHeJ_P0093406 Dbr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093407.1 MGP_C3HHeJ_G0034855.1 mouse_genomes_project 9 100163649 100166042 + MGP_C3HHeJ_P0093407 Dbr1 protein_coding protein_coding MGP_C3HHeJ_T0010974.1 MGP_C3HHeJ_G0009107.1 mouse_genomes_project 9 47295636 47295719 - Gm23653 miRNA miRNA MGP_C3HHeJ_T0092880.1 MGP_C3HHeJ_G0034737.1 mouse_genomes_project 9 77955114 78026620 + MGP_C3HHeJ_P0092880 Elovl5 protein_coding protein_coding MGP_C3HHeJ_T0092881.1 MGP_C3HHeJ_G0034737.1 mouse_genomes_project 9 77955184 78000626 + Elovl5 protein_coding retained_intron MGP_C3HHeJ_T0092882.1 MGP_C3HHeJ_G0034737.1 mouse_genomes_project 9 77960816 78021970 + MGP_C3HHeJ_P0092882 Elovl5 protein_coding protein_coding MGP_C3HHeJ_T0092883.1 MGP_C3HHeJ_G0034737.1 mouse_genomes_project 9 77981614 78003918 + MGP_C3HHeJ_P0092883 Elovl5 protein_coding protein_coding MGP_C3HHeJ_T0093159.1 MGP_C3HHeJ_G0034802.1 mouse_genomes_project 9 90196677 90202639 + MGP_C3HHeJ_P0093159 protein_coding protein_coding MGP_C3HHeJ_T0093160.1 MGP_C3HHeJ_G0034802.1 mouse_genomes_project 9 90196678 90326647 + MGP_C3HHeJ_P0093160 protein_coding protein_coding MGP_C3HHeJ_T0093161.1 MGP_C3HHeJ_G0034802.1 mouse_genomes_project 9 90196678 90202626 + MGP_C3HHeJ_P0093161 protein_coding protein_coding MGP_C3HHeJ_T0093162.1 MGP_C3HHeJ_G0034802.1 mouse_genomes_project 9 90196681 90213517 + protein_coding retained_intron MGP_C3HHeJ_T0094663.1 MGP_C3HHeJ_G0035070.1 mouse_genomes_project 9 115925796 116003824 + MGP_C3HHeJ_P0094663 Glb1 protein_coding protein_coding MGP_C3HHeJ_T0002337.1 MGP_C3HHeJ_G0002256.1 mouse_genomes_project 9 72412829 72414933 + TEC TEC MGP_C3HHeJ_T0092231.1 MGP_C3HHeJ_G0034584.1 mouse_genomes_project 9 58815445 58840645 + MGP_C3HHeJ_P0092231 Hexa protein_coding protein_coding MGP_C3HHeJ_T0093033.1 MGP_C3HHeJ_G0034772.1 mouse_genomes_project 9 85531034 85537935 - MGP_C3HHeJ_P0093033 Fam46a protein_coding protein_coding MGP_C3HHeJ_T0093034.1 MGP_C3HHeJ_G0034772.1 mouse_genomes_project 9 85531034 85537711 - MGP_C3HHeJ_P0093034 Fam46a protein_coding protein_coding MGP_C3HHeJ_T0093090.1 MGP_C3HHeJ_G0034782.1 mouse_genomes_project 9 87280136 87284516 + MGP_C3HHeJ_P0093090 Ripply2 protein_coding protein_coding MGP_C3HHeJ_T0093091.1 MGP_C3HHeJ_G0034782.1 mouse_genomes_project 9 87280235 87284515 + MGP_C3HHeJ_P0093091 Ripply2 protein_coding protein_coding MGP_C3HHeJ_T0009191.1 MGP_C3HHeJ_G0007380.1 mouse_genomes_project 9 78225199 78228163 + C920006O11Rik lincRNA lincRNA MGP_C3HHeJ_T0094787.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121906352 121921681 + MGP_C3HHeJ_P0094787 Slc25a38 protein_coding protein_coding MGP_C3HHeJ_T0094788.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121906383 121916641 + MGP_C3HHeJ_P0094788 Slc25a38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094789.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121906386 121916270 + Slc25a38 protein_coding processed_transcript MGP_C3HHeJ_T0094790.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121906386 121907576 + Slc25a38 protein_coding processed_transcript MGP_C3HHeJ_T0094791.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121906402 121920828 + MGP_C3HHeJ_P0094791 Slc25a38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094792.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121910848 121918160 + MGP_C3HHeJ_P0094792 Slc25a38 protein_coding protein_coding MGP_C3HHeJ_T0094793.1 MGP_C3HHeJ_G0035116.1 mouse_genomes_project 9 121910987 121916245 + Slc25a38 protein_coding processed_transcript MGP_C3HHeJ_T0090949.1 MGP_C3HHeJ_G0034111.1 mouse_genomes_project 9 18392636 18397285 + MGP_C3HHeJ_P0090949 Ppan protein_coding protein_coding MGP_C3HHeJ_T0090950.1 MGP_C3HHeJ_G0034111.1 mouse_genomes_project 9 18392711 18395448 + Ppan protein_coding retained_intron MGP_C3HHeJ_T0090951.1 MGP_C3HHeJ_G0034111.1 mouse_genomes_project 9 18392728 18394789 + Ppan protein_coding retained_intron MGP_C3HHeJ_T0090952.1 MGP_C3HHeJ_G0034111.1 mouse_genomes_project 9 18392746 18397285 + Ppan protein_coding retained_intron MGP_C3HHeJ_T0090953.1 MGP_C3HHeJ_G0034111.1 mouse_genomes_project 9 18395744 18396461 + Ppan protein_coding retained_intron MGP_C3HHeJ_T0090954.1 MGP_C3HHeJ_G0034111.1 mouse_genomes_project 9 18396313 18396789 + Ppan protein_coding retained_intron MGP_C3HHeJ_T0094605.1 MGP_C3HHeJ_G0035059.1 mouse_genomes_project 9 112873508 113013762 - MGP_C3HHeJ_P0094605 Stac protein_coding protein_coding MGP_C3HHeJ_T0094606.1 MGP_C3HHeJ_G0035059.1 mouse_genomes_project 9 112873508 113013639 - MGP_C3HHeJ_P0094606 Stac protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094607.1 MGP_C3HHeJ_G0035059.1 mouse_genomes_project 9 112950385 113013743 - Stac protein_coding processed_transcript MGP_C3HHeJ_T0091458.1 MGP_C3HHeJ_G0034330.1 mouse_genomes_project 9 38202270 38203206 + MGP_C3HHeJ_P0091458 protein_coding protein_coding MGP_C3HHeJ_T0091430.1 MGP_C3HHeJ_G0034308.1 mouse_genomes_project 9 37416621 37417740 - MGP_C3HHeJ_P0091430 Olfr938 protein_coding protein_coding MGP_C3HHeJ_T0002430.1 MGP_C3HHeJ_G0002348.1 mouse_genomes_project 9 111581187 111583774 - TEC TEC MGP_C3HHeJ_T0093155.1 MGP_C3HHeJ_G0034800.1 mouse_genomes_project 9 89985198 89991059 - MGP_C3HHeJ_P0093155 Tmed3 protein_coding protein_coding MGP_C3HHeJ_T0093156.1 MGP_C3HHeJ_G0034800.1 mouse_genomes_project 9 89989236 89990814 - Tmed3 protein_coding retained_intron MGP_C3HHeJ_T0015950.1 MGP_C3HHeJ_G0014054.1 mouse_genomes_project 9 111176626 111177420 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093862.1 MGP_C3HHeJ_G0034941.1 mouse_genomes_project 9 108491494 108494355 + MGP_C3HHeJ_P0093862 Tusc2 protein_coding protein_coding MGP_C3HHeJ_T0093863.1 MGP_C3HHeJ_G0034941.1 mouse_genomes_project 9 108491593 108492191 + Tusc2 protein_coding processed_transcript MGP_C3HHeJ_T0093864.1 MGP_C3HHeJ_G0034941.1 mouse_genomes_project 9 108491612 108493238 + MGP_C3HHeJ_P0093864 Tusc2 protein_coding protein_coding MGP_C3HHeJ_T0094144.1 MGP_C3HHeJ_G0034982.1 mouse_genomes_project 9 109422072 109427484 + MGP_C3HHeJ_P0094144 Ccdc71 protein_coding protein_coding MGP_C3HHeJ_T0094145.1 MGP_C3HHeJ_G0034982.1 mouse_genomes_project 9 109422080 109424813 + MGP_C3HHeJ_P0094145 Ccdc71 protein_coding protein_coding MGP_C3HHeJ_T0094146.1 MGP_C3HHeJ_G0034982.1 mouse_genomes_project 9 109422965 109427352 + MGP_C3HHeJ_P0094146 Ccdc71 protein_coding protein_coding MGP_C3HHeJ_T0090665.1 MGP_C3HHeJ_G0033998.1 mouse_genomes_project 9 3179566 3398171 + MGP_C3HHeJ_P0090665 Pdgfd protein_coding protein_coding MGP_C3HHeJ_T0090666.1 MGP_C3HHeJ_G0033998.1 mouse_genomes_project 9 3179615 3399495 + MGP_C3HHeJ_P0090666 Pdgfd protein_coding protein_coding MGP_C3HHeJ_T0094494.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111893074 111922455 - MGP_C3HHeJ_P0094494 Nbeal2 protein_coding protein_coding MGP_C3HHeJ_T0094495.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111893074 111922455 - MGP_C3HHeJ_P0094495 Nbeal2 protein_coding protein_coding MGP_C3HHeJ_T0094496.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111893157 111922436 - MGP_C3HHeJ_P0094496 Nbeal2 protein_coding protein_coding MGP_C3HHeJ_T0094497.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111893328 111906909 - MGP_C3HHeJ_P0094497 Nbeal2 protein_coding protein_coding MGP_C3HHeJ_T0094498.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111893328 111900337 - MGP_C3HHeJ_P0094498 Nbeal2 protein_coding protein_coding MGP_C3HHeJ_T0094499.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111896521 111897164 - Nbeal2 protein_coding retained_intron MGP_C3HHeJ_T0094500.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111897193 111897954 - Nbeal2 protein_coding retained_intron MGP_C3HHeJ_T0094501.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111897855 111902735 - MGP_C3HHeJ_P0094501 Nbeal2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094502.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111899351 111900166 - Nbeal2 protein_coding retained_intron MGP_C3HHeJ_T0094503.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111902911 111903379 - Nbeal2 protein_coding retained_intron MGP_C3HHeJ_T0094504.1 MGP_C3HHeJ_G0035036.1 mouse_genomes_project 9 111906609 111913664 - MGP_C3HHeJ_P0094504 Nbeal2 protein_coding protein_coding MGP_C3HHeJ_T0099707.1 MGP_C3HHeJ_G0037901.1 mouse_genomes_project 9 70279476 70279583 - Gm23730 snRNA snRNA MGP_C3HHeJ_T0009129.1 MGP_C3HHeJ_G0007328.1 mouse_genomes_project 9 22846394 22869217 + Gm29642 lincRNA lincRNA MGP_C3HHeJ_T0094023.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108934689 108941877 + MGP_C3HHeJ_P0094023 Cdhr4 protein_coding protein_coding MGP_C3HHeJ_T0094024.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108937882 108940255 + MGP_C3HHeJ_P0094024 Cdhr4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094025.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108937918 108938767 + Cdhr4 protein_coding retained_intron MGP_C3HHeJ_T0094026.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108937924 108941865 + Cdhr4 protein_coding retained_intron MGP_C3HHeJ_T0094027.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108937948 108938551 + Cdhr4 protein_coding retained_intron MGP_C3HHeJ_T0094028.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108937955 108941868 + Cdhr4 protein_coding retained_intron MGP_C3HHeJ_T0094029.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108937975 108939123 + Cdhr4 protein_coding retained_intron MGP_C3HHeJ_T0094030.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108938098 108939855 + Cdhr4 protein_coding processed_transcript MGP_C3HHeJ_T0094031.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108938136 108941877 + MGP_C3HHeJ_P0094031 Cdhr4 protein_coding protein_coding MGP_C3HHeJ_T0094032.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108938190 108939350 + Cdhr4 protein_coding retained_intron MGP_C3HHeJ_T0094034.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108938808 108941872 + MGP_C3HHeJ_P0094034 Cdhr4 protein_coding protein_coding MGP_C3HHeJ_T0094035.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108939564 108941873 + MGP_C3HHeJ_P0094035 Cdhr4 protein_coding protein_coding MGP_C3HHeJ_T0094036.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108939785 108941870 + MGP_C3HHeJ_P0094036 Cdhr4 protein_coding protein_coding MGP_C3HHeJ_T0094037.1 MGP_C3HHeJ_G0034962.1 mouse_genomes_project 9 108939870 108941872 + MGP_C3HHeJ_P0094037 Cdhr4 protein_coding protein_coding MGP_C3HHeJ_T0005396.1 MGP_C3HHeJ_G0004555.1 mouse_genomes_project 9 69051436 69067213 - Gm15511 antisense antisense MGP_C3HHeJ_T0005452.1 MGP_C3HHeJ_G0004593.1 mouse_genomes_project 9 107142884 107144536 + 4930500F10Rik antisense antisense MGP_C3HHeJ_T0002383.1 MGP_C3HHeJ_G0002301.1 mouse_genomes_project 9 98475069 98476619 - TEC TEC MGP_C3HHeJ_T0092625.1 MGP_C3HHeJ_G0034683.1 mouse_genomes_project 9 70304860 70359186 + MGP_C3HHeJ_P0092625 Sltm protein_coding protein_coding MGP_C3HHeJ_T0002403.1 MGP_C3HHeJ_G0002321.1 mouse_genomes_project 9 102992693 102993938 + TEC TEC MGP_C3HHeJ_T0091176.1 MGP_C3HHeJ_G0034198.1 mouse_genomes_project 9 29040288 29103774 - MGP_C3HHeJ_P0091176 Aplp2 protein_coding protein_coding MGP_C3HHeJ_T0091177.1 MGP_C3HHeJ_G0034198.1 mouse_genomes_project 9 29040288 29103774 - MGP_C3HHeJ_P0091177 Aplp2 protein_coding protein_coding MGP_C3HHeJ_T0091286.1 MGP_C3HHeJ_G0034232.1 mouse_genomes_project 9 34653690 34655265 + MGP_C3HHeJ_P0091286 Gm9513 protein_coding protein_coding MGP_C3HHeJ_T0010966.1 MGP_C3HHeJ_G0009099.1 mouse_genomes_project 9 40043138 40043234 + Mirlet7a-2 miRNA miRNA MGP_C3HHeJ_T0091981.1 MGP_C3HHeJ_G0034509.1 mouse_genomes_project 9 53567635 53587828 + MGP_C3HHeJ_P0091981 Idh3a protein_coding protein_coding MGP_C3HHeJ_T0091982.1 MGP_C3HHeJ_G0034509.1 mouse_genomes_project 9 53567641 53587836 + MGP_C3HHeJ_P0091982 Idh3a protein_coding unknown_likely_coding MGP_C3HHeJ_T0100962.1 MGP_C3HHeJ_G0039156.1 mouse_genomes_project 9 39281431 39281517 + Snord14c snoRNA snoRNA MGP_C3HHeJ_T0093041.1 MGP_C3HHeJ_G0034774.1 mouse_genomes_project 9 86081203 86085841 + MGP_C3HHeJ_P0093041 Tpbg protein_coding protein_coding MGP_C3HHeJ_T0093042.1 MGP_C3HHeJ_G0034774.1 mouse_genomes_project 9 86081688 86085841 + MGP_C3HHeJ_P0093042 Tpbg protein_coding protein_coding MGP_C3HHeJ_T0093043.1 MGP_C3HHeJ_G0034774.1 mouse_genomes_project 9 86082178 86082740 + Tpbg protein_coding processed_transcript MGP_C3HHeJ_T0091798.1 MGP_C3HHeJ_G0034446.1 mouse_genomes_project 9 47384251 47390787 - Nnmt protein_coding processed_transcript MGP_C3HHeJ_T0091799.1 MGP_C3HHeJ_G0034446.1 mouse_genomes_project 9 47384251 47398359 - MGP_C3HHeJ_P0091799 Nnmt protein_coding protein_coding MGP_C3HHeJ_T0091800.1 MGP_C3HHeJ_G0034446.1 mouse_genomes_project 9 47384251 47398359 - MGP_C3HHeJ_P0091800 Nnmt protein_coding protein_coding MGP_C3HHeJ_T0091801.1 MGP_C3HHeJ_G0034446.1 mouse_genomes_project 9 47384265 47390861 - Nnmt protein_coding processed_transcript MGP_C3HHeJ_T0091802.1 MGP_C3HHeJ_G0034446.1 mouse_genomes_project 9 47396509 47398283 - Nnmt protein_coding retained_intron MGP_C3HHeJ_T0002423.1 MGP_C3HHeJ_G0002341.1 mouse_genomes_project 9 109498975 109500909 + TEC TEC MGP_C3HHeJ_T0094110.1 MGP_C3HHeJ_G0034976.1 mouse_genomes_project 9 109298036 109298936 + Gpx1 protein_coding retained_intron MGP_C3HHeJ_T0094111.1 MGP_C3HHeJ_G0034976.1 mouse_genomes_project 9 109298187 109299477 + MGP_C3HHeJ_P0094111 Gpx1 protein_coding protein_coding MGP_C3HHeJ_T0094112.1 MGP_C3HHeJ_G0034976.1 mouse_genomes_project 9 109298376 109299384 + MGP_C3HHeJ_P0094112 Gpx1 protein_coding protein_coding MGP_C3HHeJ_T0094113.1 MGP_C3HHeJ_G0034976.1 mouse_genomes_project 9 109298409 109299384 + MGP_C3HHeJ_P0094113 Gpx1 protein_coding protein_coding MGP_C3HHeJ_T0100990.1 MGP_C3HHeJ_G0039184.1 mouse_genomes_project 9 86960651 86960779 + Gm22138 snoRNA snoRNA MGP_C3HHeJ_T0099682.1 MGP_C3HHeJ_G0037876.1 mouse_genomes_project 9 30405303 30405410 - Gm22060 snRNA snRNA MGP_C3HHeJ_T0015918.1 MGP_C3HHeJ_G0014022.1 mouse_genomes_project 9 96756663 96756904 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099700.1 MGP_C3HHeJ_G0037894.1 mouse_genomes_project 9 64724271 64724387 - Rnu5g snRNA snRNA MGP_C3HHeJ_T0090677.1 MGP_C3HHeJ_G0034002.1 mouse_genomes_project 9 4306917 4317737 + MGP_C3HHeJ_P0090677 Mmp13 protein_coding protein_coding MGP_C3HHeJ_T0091434.1 MGP_C3HHeJ_G0034312.1 mouse_genomes_project 9 37580638 37581583 - MGP_C3HHeJ_P0091434 Olfr1537 protein_coding protein_coding MGP_C3HHeJ_T0098203.1 MGP_C3HHeJ_G0036415.1 mouse_genomes_project 9 59338321 59338432 - Gm23668 rRNA rRNA MGP_C3HHeJ_T0093432.1 MGP_C3HHeJ_G0034862.1 mouse_genomes_project 9 101216318 101235207 - MGP_C3HHeJ_P0093432 Slc35g2 protein_coding protein_coding MGP_C3HHeJ_T0093433.1 MGP_C3HHeJ_G0034862.1 mouse_genomes_project 9 101216320 101217046 - Slc35g2 protein_coding processed_transcript MGP_C3HHeJ_T0005357.1 MGP_C3HHeJ_G0004531.1 mouse_genomes_project 9 35228159 35233070 + Gm3896 antisense antisense MGP_C3HHeJ_T0015873.1 MGP_C3HHeJ_G0013977.1 mouse_genomes_project 9 76971656 76971894 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099684.1 MGP_C3HHeJ_G0037878.1 mouse_genomes_project 9 36082437 36082636 - Gm24764 snRNA snRNA MGP_C3HHeJ_T0091818.1 MGP_C3HHeJ_G0034455.1 mouse_genomes_project 9 48245981 48258649 - MGP_C3HHeJ_P0091818 Ankk1 protein_coding protein_coding MGP_C3HHeJ_T0094490.1 MGP_C3HHeJ_G0035035.1 mouse_genomes_project 9 111889420 111892738 - MGP_C3HHeJ_P0094490 Nradd protein_coding protein_coding MGP_C3HHeJ_T0094491.1 MGP_C3HHeJ_G0035035.1 mouse_genomes_project 9 111889793 111891608 - MGP_C3HHeJ_P0094491 Nradd protein_coding protein_coding MGP_C3HHeJ_T0094492.1 MGP_C3HHeJ_G0035035.1 mouse_genomes_project 9 111890170 111892664 - MGP_C3HHeJ_P0094492 Nradd protein_coding protein_coding MGP_C3HHeJ_T0094493.1 MGP_C3HHeJ_G0035035.1 mouse_genomes_project 9 111890865 111892717 - Nradd protein_coding retained_intron MGP_C3HHeJ_T0094671.1 MGP_C3HHeJ_G0035078.1 mouse_genomes_project 9 116296957 116322061 - MGP_C3HHeJ_P0094671 Cmtm7 protein_coding protein_coding MGP_C3HHeJ_T0094672.1 MGP_C3HHeJ_G0035078.1 mouse_genomes_project 9 116296957 116322061 - MGP_C3HHeJ_P0094672 Cmtm7 protein_coding protein_coding MGP_C3HHeJ_T0091779.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283349 46614133 + MGP_C3HHeJ_P0091779 Cadm1 protein_coding protein_coding MGP_C3HHeJ_T0091780.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283387 46611345 + MGP_C3HHeJ_P0091780 Cadm1 protein_coding protein_coding MGP_C3HHeJ_T0091781.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283420 46618391 + MGP_C3HHeJ_P0091781 Cadm1 protein_coding protein_coding MGP_C3HHeJ_T0091782.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283433 46614128 + MGP_C3HHeJ_P0091782 Cadm1 protein_coding protein_coding MGP_C3HHeJ_T0091783.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283433 46611787 + MGP_C3HHeJ_P0091783 Cadm1 protein_coding protein_coding MGP_C3HHeJ_T0091784.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283528 46579702 + Cadm1 protein_coding retained_intron MGP_C3HHeJ_T0091785.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283528 46552174 + Cadm1 protein_coding retained_intron MGP_C3HHeJ_T0091786.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283549 46574658 + Cadm1 protein_coding processed_transcript MGP_C3HHeJ_T0091787.1 MGP_C3HHeJ_G0034439.1 mouse_genomes_project 9 46283549 46611148 + MGP_C3HHeJ_P0091787 Cadm1 protein_coding protein_coding MGP_C3HHeJ_T0011655.1 MGP_C3HHeJ_G0009788.1 mouse_genomes_project 9 119975000 119975307 + Gm22198 misc_RNA misc_RNA MGP_C3HHeJ_T0100945.1 MGP_C3HHeJ_G0039139.1 mouse_genomes_project 9 12567523 12567597 + Gm24357 snoRNA snoRNA MGP_C3HHeJ_T0091318.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35019142 35050323 + MGP_C3HHeJ_P0091318 Fez1 protein_coding protein_coding MGP_C3HHeJ_T0091319.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35029878 35081440 + MGP_C3HHeJ_P0091319 Fez1 protein_coding protein_coding MGP_C3HHeJ_T0091320.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35030884 35066058 + MGP_C3HHeJ_P0091320 Fez1 protein_coding protein_coding MGP_C3HHeJ_T0091321.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35042091 35081156 + MGP_C3HHeJ_P0091321 Fez1 protein_coding protein_coding MGP_C3HHeJ_T0091322.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35042210 35070283 + MGP_C3HHeJ_P0091322 Fez1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091323.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35071380 35073268 + MGP_C3HHeJ_P0091323 Fez1 protein_coding protein_coding MGP_C3HHeJ_T0091324.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35072605 35081316 + Fez1 protein_coding retained_intron MGP_C3HHeJ_T0091325.1 MGP_C3HHeJ_G0034240.1 mouse_genomes_project 9 35073005 35081436 + MGP_C3HHeJ_P0091325 Fez1 protein_coding protein_coding MGP_C3HHeJ_T0002375.1 MGP_C3HHeJ_G0002293.1 mouse_genomes_project 9 91699855 91700595 - TEC TEC MGP_C3HHeJ_T0092491.1 MGP_C3HHeJ_G0034654.1 mouse_genomes_project 9 65659659 65664215 - MGP_C3HHeJ_P0092491 Snx22 protein_coding protein_coding MGP_C3HHeJ_T0091967.1 MGP_C3HHeJ_G0034504.1 mouse_genomes_project 9 53139134 53167406 - MGP_C3HHeJ_P0091967 Cyp19a1 protein_coding protein_coding MGP_C3HHeJ_T0094546.1 MGP_C3HHeJ_G0035048.1 mouse_genomes_project 9 112197515 112199577 - MGP_C3HHeJ_P0094546 Gm590 protein_coding protein_coding MGP_C3HHeJ_T0018313.1 MGP_C3HHeJ_G0015502.1 mouse_genomes_project 9 63546485 63553913 + Scarletltr processed_transcript processed_transcript MGP_C3HHeJ_T0015825.1 MGP_C3HHeJ_G0013929.1 mouse_genomes_project 9 31922444 31922676 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005377.1 MGP_C3HHeJ_G0004544.1 mouse_genomes_project 9 54559508 54560507 - Gm17226 antisense antisense MGP_C3HHeJ_T0005378.1 MGP_C3HHeJ_G0004544.1 mouse_genomes_project 9 54559519 54560848 - Gm17226 antisense antisense MGP_C3HHeJ_T0094763.1 MGP_C3HHeJ_G0035103.1 mouse_genomes_project 9 121109754 121148631 + MGP_C3HHeJ_P0094763 Xylb protein_coding protein_coding MGP_C3HHeJ_T0015893.1 MGP_C3HHeJ_G0013997.1 mouse_genomes_project 9 88026277 88026779 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015883.1 MGP_C3HHeJ_G0013987.1 mouse_genomes_project 9 82695723 82696051 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015820.1 MGP_C3HHeJ_G0013924.1 mouse_genomes_project 9 20299585 20300380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091969.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53336778 53478303 - MGP_C3HHeJ_P0091969 Dmxl2 protein_coding protein_coding MGP_C3HHeJ_T0091970.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53336784 53353676 - Dmxl2 protein_coding retained_intron MGP_C3HHeJ_T0091971.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53336880 53417717 - MGP_C3HHeJ_P0091971 Dmxl2 protein_coding protein_coding MGP_C3HHeJ_T0091972.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53337731 53478173 - MGP_C3HHeJ_P0091972 Dmxl2 protein_coding protein_coding MGP_C3HHeJ_T0091973.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53387864 53446491 - MGP_C3HHeJ_P0091973 Dmxl2 protein_coding protein_coding MGP_C3HHeJ_T0091974.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53395022 53478248 - Dmxl2 protein_coding retained_intron MGP_C3HHeJ_T0091975.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53417627 53419298 - Dmxl2 protein_coding processed_transcript MGP_C3HHeJ_T0091976.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53445003 53478303 - Dmxl2 protein_coding retained_intron MGP_C3HHeJ_T0091977.1 MGP_C3HHeJ_G0034506.1 mouse_genomes_project 9 53446177 53478437 - MGP_C3HHeJ_P0091977 Dmxl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090692.1 MGP_C3HHeJ_G0034009.1 mouse_genomes_project 9 4652868 4703962 + MGP_C3HHeJ_P0090692 Mmp20 protein_coding protein_coding MGP_C3HHeJ_T0098560.1 MGP_C3HHeJ_G0036759.1 mouse_genomes_project 9 88693924 88696077 - Gm28229 sense_intronic sense_intronic MGP_C3HHeJ_T0091404.1 MGP_C3HHeJ_G0034288.1 mouse_genomes_project 9 36926011 36926962 + MGP_C3HHeJ_P0091404 Olfr914 protein_coding protein_coding MGP_C3HHeJ_T0090994.1 MGP_C3HHeJ_G0034132.1 mouse_genomes_project 9 18902555 18939407 + MGP_C3HHeJ_P0090994 Ilf3 protein_coding protein_coding MGP_C3HHeJ_T0090995.1 MGP_C3HHeJ_G0034132.1 mouse_genomes_project 9 18902555 18942965 + MGP_C3HHeJ_P0090995 Ilf3 protein_coding protein_coding MGP_C3HHeJ_T0090996.1 MGP_C3HHeJ_G0034132.1 mouse_genomes_project 9 18940481 18942974 + MGP_C3HHeJ_P0090996 Ilf3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092195.1 MGP_C3HHeJ_G0034572.1 mouse_genomes_project 9 57484458 57509927 - MGP_C3HHeJ_P0092195 Loxl1 protein_coding protein_coding MGP_C3HHeJ_T0092012.1 MGP_C3HHeJ_G0034519.1 mouse_genomes_project 9 54009127 54024984 - MGP_C3HHeJ_P0092012 Chrna3 protein_coding protein_coding MGP_C3HHeJ_T0099701.1 MGP_C3HHeJ_G0037895.1 mouse_genomes_project 9 65493741 65493848 + Gm23248 snRNA snRNA MGP_C3HHeJ_T0092591.1 MGP_C3HHeJ_G0034675.1 mouse_genomes_project 9 69471185 69474406 - MGP_C3HHeJ_P0092591 Foxb1 protein_coding protein_coding MGP_C3HHeJ_T0094722.1 MGP_C3HHeJ_G0035092.1 mouse_genomes_project 9 120642855 120765700 + MGP_C3HHeJ_P0094722 Ctdspl protein_coding protein_coding MGP_C3HHeJ_T0094723.1 MGP_C3HHeJ_G0035092.1 mouse_genomes_project 9 120643004 120762358 + MGP_C3HHeJ_P0094723 Ctdspl protein_coding protein_coding MGP_C3HHeJ_T0094724.1 MGP_C3HHeJ_G0035092.1 mouse_genomes_project 9 120646008 120754282 + Ctdspl protein_coding processed_transcript MGP_C3HHeJ_T0094725.1 MGP_C3HHeJ_G0035092.1 mouse_genomes_project 9 120753654 120762618 + Ctdspl protein_coding retained_intron MGP_C3HHeJ_T0099713.1 MGP_C3HHeJ_G0037907.1 mouse_genomes_project 9 74220409 74220524 + Gm24141 snRNA snRNA MGP_C3HHeJ_T0009211.1 MGP_C3HHeJ_G0007396.1 mouse_genomes_project 9 91755865 91928786 + Gm29478 lincRNA lincRNA MGP_C3HHeJ_T0091678.1 MGP_C3HHeJ_G0034407.1 mouse_genomes_project 9 43611467 43622148 - MGP_C3HHeJ_P0091678 Cd3g protein_coding protein_coding MGP_C3HHeJ_T0091679.1 MGP_C3HHeJ_G0034407.1 mouse_genomes_project 9 43611649 43612713 - Cd3g protein_coding retained_intron MGP_C3HHeJ_T0091680.1 MGP_C3HHeJ_G0034407.1 mouse_genomes_project 9 43615517 43622148 - MGP_C3HHeJ_P0091680 Cd3g protein_coding protein_coding MGP_C3HHeJ_T0094903.1 MGP_C3HHeJ_G0035148.1 mouse_genomes_project 9 124732564 124745399 - MGP_C3HHeJ_P0094903 Zfp445 protein_coding protein_coding MGP_C3HHeJ_T0091664.1 MGP_C3HHeJ_G0034404.1 mouse_genomes_project 9 43438455 43517673 - MGP_C3HHeJ_P0091664 Kmt2a protein_coding unknown_likely_coding MGP_C3HHeJ_T0091665.1 MGP_C3HHeJ_G0034404.1 mouse_genomes_project 9 43438456 43517673 - MGP_C3HHeJ_P0091665 Kmt2a protein_coding protein_coding MGP_C3HHeJ_T0091666.1 MGP_C3HHeJ_G0034404.1 mouse_genomes_project 9 43438456 43517695 - MGP_C3HHeJ_P0091666 Kmt2a protein_coding protein_coding MGP_C3HHeJ_T0091667.1 MGP_C3HHeJ_G0034404.1 mouse_genomes_project 9 43450448 43455884 - MGP_C3HHeJ_P0091667 Kmt2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091668.1 MGP_C3HHeJ_G0034404.1 mouse_genomes_project 9 43458503 43483866 - MGP_C3HHeJ_P0091668 Kmt2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091669.1 MGP_C3HHeJ_G0034404.1 mouse_genomes_project 9 43477245 43517695 - MGP_C3HHeJ_P0091669 Kmt2a protein_coding protein_coding MGP_C3HHeJ_T0100982.1 MGP_C3HHeJ_G0039176.1 mouse_genomes_project 9 70232198 70232311 + Gm24615 snoRNA snoRNA MGP_C3HHeJ_T0092117.1 MGP_C3HHeJ_G0034551.1 mouse_genomes_project 9 56669030 56674613 + MGP_C3HHeJ_P0092117 Fam219b protein_coding protein_coding MGP_C3HHeJ_T0093144.1 MGP_C3HHeJ_G0034795.1 mouse_genomes_project 9 89238974 89239970 + MGP_C3HHeJ_P0093144 protein_coding protein_coding MGP_C3HHeJ_T0093174.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90395137 90423805 - Morf4l1 protein_coding retained_intron MGP_C3HHeJ_T0093175.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90395563 90423740 - MGP_C3HHeJ_P0093175 Morf4l1 protein_coding protein_coding MGP_C3HHeJ_T0093176.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90397148 90423454 - Morf4l1 protein_coding processed_transcript MGP_C3HHeJ_T0093177.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90400438 90402146 - Morf4l1 protein_coding retained_intron MGP_C3HHeJ_T0093178.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90403214 90404121 - Morf4l1 protein_coding retained_intron MGP_C3HHeJ_T0093179.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90403639 90423824 - MGP_C3HHeJ_P0093179 Morf4l1 protein_coding protein_coding MGP_C3HHeJ_T0093180.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90404117 90423694 - Morf4l1 protein_coding processed_transcript MGP_C3HHeJ_T0093181.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90404117 90423863 - MGP_C3HHeJ_P0093181 Morf4l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093182.1 MGP_C3HHeJ_G0034804.1 mouse_genomes_project 9 90416811 90423748 - Morf4l1 protein_coding retained_intron MGP_C3HHeJ_T0015875.1 MGP_C3HHeJ_G0013979.1 mouse_genomes_project 9 77288721 77289123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093531.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104034344 104080524 + MGP_C3HHeJ_P0093531 Topbp1 protein_coding protein_coding MGP_C3HHeJ_T0093532.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104034360 104035123 + Topbp1 protein_coding retained_intron MGP_C3HHeJ_T0093533.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104034632 104040666 + MGP_C3HHeJ_P0093533 Topbp1 protein_coding protein_coding MGP_C3HHeJ_T0093534.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104057879 104067000 + Topbp1 protein_coding retained_intron MGP_C3HHeJ_T0093535.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104057905 104059707 + Topbp1 protein_coding retained_intron MGP_C3HHeJ_T0093536.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104062797 104072105 + MGP_C3HHeJ_P0093536 Topbp1 protein_coding protein_coding MGP_C3HHeJ_T0093537.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104073696 104076822 + MGP_C3HHeJ_P0093537 Topbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093538.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104073998 104074783 + Topbp1 protein_coding retained_intron MGP_C3HHeJ_T0093539.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104075699 104077183 + Topbp1 protein_coding retained_intron MGP_C3HHeJ_T0093540.1 MGP_C3HHeJ_G0034881.1 mouse_genomes_project 9 104076320 104079997 + Topbp1 protein_coding retained_intron MGP_C3HHeJ_T0005389.1 MGP_C3HHeJ_G0004551.1 mouse_genomes_project 9 66030734 66033630 - Gm28379 antisense antisense MGP_C3HHeJ_T0005390.1 MGP_C3HHeJ_G0004551.1 mouse_genomes_project 9 66031291 66062429 - Gm28379 antisense antisense MGP_C3HHeJ_T0090726.1 MGP_C3HHeJ_G0034020.1 mouse_genomes_project 9 6037364 6041347 + MGP_C3HHeJ_P0090726 Gm16485 protein_coding protein_coding MGP_C3HHeJ_T0009157.1 MGP_C3HHeJ_G0007352.1 mouse_genomes_project 9 52209157 52225952 + 4930510E17Rik lincRNA lincRNA MGP_C3HHeJ_T0092879.1 MGP_C3HHeJ_G0034736.1 mouse_genomes_project 9 77785748 77830974 + MGP_C3HHeJ_P0092879 Gclc protein_coding protein_coding MGP_C3HHeJ_T0099693.1 MGP_C3HHeJ_G0037887.1 mouse_genomes_project 9 49783089 49783195 + Gm25558 snRNA snRNA MGP_C3HHeJ_T0005407.1 MGP_C3HHeJ_G0004564.1 mouse_genomes_project 9 78496324 78497528 - 4930542C12Rik antisense antisense MGP_C3HHeJ_T0099736.1 MGP_C3HHeJ_G0037930.1 mouse_genomes_project 9 116133111 116133216 - Gm23232 snRNA snRNA MGP_C3HHeJ_T0093681.1 MGP_C3HHeJ_G0034907.1 mouse_genomes_project 9 107116258 107120543 + MGP_C3HHeJ_P0093681 Tlr9 protein_coding protein_coding MGP_C3HHeJ_T0094974.1 MGP_C3HHeJ_G0035175.1 mouse_genomes_project 9 126230898 126252708 - MGP_C3HHeJ_P0094974 2010315B03Rik protein_coding protein_coding MGP_C3HHeJ_T0094975.1 MGP_C3HHeJ_G0035175.1 mouse_genomes_project 9 126232735 126252654 - MGP_C3HHeJ_P0094975 2010315B03Rik protein_coding protein_coding MGP_C3HHeJ_T0094976.1 MGP_C3HHeJ_G0035175.1 mouse_genomes_project 9 126232925 126251911 - MGP_C3HHeJ_P0094976 2010315B03Rik protein_coding protein_coding MGP_C3HHeJ_T0094977.1 MGP_C3HHeJ_G0035175.1 mouse_genomes_project 9 126232937 126252683 - MGP_C3HHeJ_P0094977 2010315B03Rik protein_coding protein_coding MGP_C3HHeJ_T0094978.1 MGP_C3HHeJ_G0035175.1 mouse_genomes_project 9 126240793 126252683 - 2010315B03Rik protein_coding processed_transcript MGP_C3HHeJ_T0009137.1 MGP_C3HHeJ_G0007336.1 mouse_genomes_project 9 32025975 32042507 + 7630403G23Rik lincRNA lincRNA MGP_C3HHeJ_T0002382.1 MGP_C3HHeJ_G0002300.1 mouse_genomes_project 9 97812696 97814576 + TEC TEC MGP_C3HHeJ_T0091828.1 MGP_C3HHeJ_G0034459.1 mouse_genomes_project 9 49370827 49381848 + MGP_C3HHeJ_P0091828 Plet1 protein_coding protein_coding MGP_C3HHeJ_T0091829.1 MGP_C3HHeJ_G0034459.1 mouse_genomes_project 9 49370829 49378390 + MGP_C3HHeJ_P0091829 Plet1 protein_coding protein_coding MGP_C3HHeJ_T0091097.1 MGP_C3HHeJ_G0034172.1 mouse_genomes_project 9 21763233 21953677 + MGP_C3HHeJ_P0091097 Npsr1 protein_coding protein_coding MGP_C3HHeJ_T0091098.1 MGP_C3HHeJ_G0034172.1 mouse_genomes_project 9 21763255 21980426 + MGP_C3HHeJ_P0091098 Npsr1 protein_coding protein_coding MGP_C3HHeJ_T0091099.1 MGP_C3HHeJ_G0034172.1 mouse_genomes_project 9 21921838 21977841 + MGP_C3HHeJ_P0091099 Npsr1 protein_coding protein_coding MGP_C3HHeJ_T0091100.1 MGP_C3HHeJ_G0034172.1 mouse_genomes_project 9 21964391 21978899 + Npsr1 protein_coding processed_transcript MGP_C3HHeJ_T0090836.1 MGP_C3HHeJ_G0034053.1 mouse_genomes_project 9 13183878 13658854 - MGP_C3HHeJ_P0090836 Fat3 protein_coding protein_coding MGP_C3HHeJ_T0092776.1 MGP_C3HHeJ_G0034710.1 mouse_genomes_project 9 72955832 72965778 + MGP_C3HHeJ_P0092776 Rsl24d1 protein_coding protein_coding MGP_C3HHeJ_T0092777.1 MGP_C3HHeJ_G0034710.1 mouse_genomes_project 9 72955854 72966447 + MGP_C3HHeJ_P0092777 Rsl24d1 protein_coding protein_coding MGP_C3HHeJ_T0092778.1 MGP_C3HHeJ_G0034710.1 mouse_genomes_project 9 72955909 72965635 + MGP_C3HHeJ_P0092778 Rsl24d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092779.1 MGP_C3HHeJ_G0034710.1 mouse_genomes_project 9 72957002 72965448 + MGP_C3HHeJ_P0092779 Rsl24d1 protein_coding protein_coding MGP_C3HHeJ_T0010984.1 MGP_C3HHeJ_G0009117.1 mouse_genomes_project 9 63706787 63706914 + Gm24106 miRNA miRNA MGP_C3HHeJ_T0090720.1 MGP_C3HHeJ_G0034016.1 mouse_genomes_project 9 5111797 5175518 - MGP_C3HHeJ_P0090720 Cep126 protein_coding protein_coding MGP_C3HHeJ_T0002353.1 MGP_C3HHeJ_G0002272.1 mouse_genomes_project 9 77354116 77354667 + TEC TEC MGP_C3HHeJ_T0005434.1 MGP_C3HHeJ_G0004579.1 mouse_genomes_project 9 97202830 97208452 + A930006L05Rik antisense antisense MGP_C3HHeJ_T0002411.1 MGP_C3HHeJ_G0002329.1 mouse_genomes_project 9 105023644 105025157 + TEC TEC MGP_C3HHeJ_T0002425.1 MGP_C3HHeJ_G0002343.1 mouse_genomes_project 9 109826655 109826997 + TEC TEC MGP_C3HHeJ_T0010971.1 MGP_C3HHeJ_G0009104.1 mouse_genomes_project 9 43008736 43008802 + Mir7085 miRNA miRNA MGP_C3HHeJ_T0011018.1 MGP_C3HHeJ_G0009151.1 mouse_genomes_project 9 116948917 116949040 + Mir467h miRNA miRNA MGP_C3HHeJ_T0100992.1 MGP_C3HHeJ_G0039186.1 mouse_genomes_project 9 88268714 88268844 - Gm23176 snoRNA snoRNA MGP_C3HHeJ_T0094940.1 MGP_C3HHeJ_G0035164.1 mouse_genomes_project 9 125552903 125600807 - MGP_C3HHeJ_P0094940 Slc6a20a protein_coding protein_coding MGP_C3HHeJ_T0094941.1 MGP_C3HHeJ_G0035164.1 mouse_genomes_project 9 125553777 125600728 - MGP_C3HHeJ_P0094941 Slc6a20a protein_coding protein_coding MGP_C3HHeJ_T0094942.1 MGP_C3HHeJ_G0035164.1 mouse_genomes_project 9 125577328 125600704 - MGP_C3HHeJ_P0094942 Slc6a20a protein_coding protein_coding MGP_C3HHeJ_T0090807.1 MGP_C3HHeJ_G0034045.1 mouse_genomes_project 9 12509677 12529957 - MGP_C3HHeJ_P0090807 Med17 protein_coding protein_coding MGP_C3HHeJ_T0099672.1 MGP_C3HHeJ_G0037866.1 mouse_genomes_project 9 3737845 3737950 - Gm23097 snRNA snRNA MGP_C3HHeJ_T0100997.1 MGP_C3HHeJ_G0039191.1 mouse_genomes_project 9 100562100 100562234 + Gm23594 snoRNA snoRNA MGP_C3HHeJ_T0002416.1 MGP_C3HHeJ_G0002334.1 mouse_genomes_project 9 106982473 106985439 + TEC TEC MGP_C3HHeJ_T0092920.1 MGP_C3HHeJ_G0034752.1 mouse_genomes_project 9 78552501 78580317 + MGP_C3HHeJ_P0092920 Mto1 protein_coding protein_coding MGP_C3HHeJ_T0092921.1 MGP_C3HHeJ_G0034752.1 mouse_genomes_project 9 78552501 78580317 + MGP_C3HHeJ_P0092921 Mto1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092922.1 MGP_C3HHeJ_G0034752.1 mouse_genomes_project 9 78552506 78554766 + Mto1 protein_coding retained_intron MGP_C3HHeJ_T0092923.1 MGP_C3HHeJ_G0034752.1 mouse_genomes_project 9 78570501 78576535 + Mto1 protein_coding retained_intron MGP_C3HHeJ_T0092924.1 MGP_C3HHeJ_G0034752.1 mouse_genomes_project 9 78570794 78581513 + MGP_C3HHeJ_P0092924 Mto1 protein_coding protein_coding MGP_C3HHeJ_T0092925.1 MGP_C3HHeJ_G0034752.1 mouse_genomes_project 9 78576186 78579998 + Mto1 protein_coding retained_intron MGP_C3HHeJ_T0092774.1 MGP_C3HHeJ_G0034709.1 mouse_genomes_project 9 72942601 72960987 + MGP_C3HHeJ_P0092774 Gm20509 protein_coding protein_coding MGP_C3HHeJ_T0092246.1 MGP_C3HHeJ_G0034589.1 mouse_genomes_project 9 59015159 59032480 - MGP_C3HHeJ_P0092246 Senp8 protein_coding protein_coding MGP_C3HHeJ_T0092247.1 MGP_C3HHeJ_G0034589.1 mouse_genomes_project 9 59015159 59032480 - MGP_C3HHeJ_P0092247 Senp8 protein_coding protein_coding MGP_C3HHeJ_T0094863.1 MGP_C3HHeJ_G0035132.1 mouse_genomes_project 9 123623538 123635247 + MGP_C3HHeJ_P0094863 Zfp651 protein_coding protein_coding MGP_C3HHeJ_T0091131.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24737115 24758766 - Acad8 protein_coding retained_intron MGP_C3HHeJ_T0091132.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24737115 24768139 - MGP_C3HHeJ_P0091132 Acad8 protein_coding protein_coding MGP_C3HHeJ_T0091133.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24737124 24768122 - MGP_C3HHeJ_P0091133 Acad8 protein_coding protein_coding MGP_C3HHeJ_T0091134.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24738356 24740936 - Acad8 protein_coding retained_intron MGP_C3HHeJ_T0091135.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24742179 24768081 - MGP_C3HHeJ_P0091135 Acad8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091136.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24742240 24768079 - MGP_C3HHeJ_P0091136 Acad8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091137.1 MGP_C3HHeJ_G0034184.1 mouse_genomes_project 9 24758735 24768078 - Acad8 protein_coding retained_intron MGP_C3HHeJ_T0090702.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4871684 4899697 - MGP_C3HHeJ_P0090702 Birc3 protein_coding protein_coding MGP_C3HHeJ_T0090703.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4872679 4885488 - MGP_C3HHeJ_P0090703 Birc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090704.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4880150 4899656 - MGP_C3HHeJ_P0090704 Birc3 protein_coding protein_coding MGP_C3HHeJ_T0090705.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4885952 4899843 - MGP_C3HHeJ_P0090705 Birc3 protein_coding protein_coding MGP_C3HHeJ_T0090706.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4885971 4899859 - MGP_C3HHeJ_P0090706 Birc3 protein_coding protein_coding MGP_C3HHeJ_T0090707.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4891837 4899530 - Birc3 protein_coding processed_transcript MGP_C3HHeJ_T0090708.1 MGP_C3HHeJ_G0034013.1 mouse_genomes_project 9 4894292 4899570 - Birc3 protein_coding processed_transcript MGP_C3HHeJ_T0002318.1 MGP_C3HHeJ_G0002237.1 mouse_genomes_project 9 32553722 32573702 + TEC TEC MGP_C3HHeJ_T0018273.1 MGP_C3HHeJ_G0015490.1 mouse_genomes_project 9 5001138 5012301 + Gm20416 processed_transcript processed_transcript MGP_C3HHeJ_T0094752.1 MGP_C3HHeJ_G0035100.1 mouse_genomes_project 9 120985719 121072897 - MGP_C3HHeJ_P0094752 Oxsr1 protein_coding protein_coding MGP_C3HHeJ_T0094753.1 MGP_C3HHeJ_G0035100.1 mouse_genomes_project 9 120987955 121072792 - MGP_C3HHeJ_P0094753 Oxsr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094754.1 MGP_C3HHeJ_G0035100.1 mouse_genomes_project 9 120988430 120990689 - Oxsr1 protein_coding retained_intron MGP_C3HHeJ_T0094755.1 MGP_C3HHeJ_G0035100.1 mouse_genomes_project 9 120990094 121012119 - MGP_C3HHeJ_P0094755 Oxsr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092302.1 MGP_C3HHeJ_G0034600.1 mouse_genomes_project 9 61317805 61395185 - Paqr5 protein_coding processed_transcript MGP_C3HHeJ_T0092303.1 MGP_C3HHeJ_G0034600.1 mouse_genomes_project 9 61318062 61395240 - MGP_C3HHeJ_P0092303 Paqr5 protein_coding protein_coding MGP_C3HHeJ_T0092304.1 MGP_C3HHeJ_G0034600.1 mouse_genomes_project 9 61320366 61343298 - MGP_C3HHeJ_P0092304 Paqr5 protein_coding protein_coding MGP_C3HHeJ_T0005459.1 MGP_C3HHeJ_G0004598.1 mouse_genomes_project 9 108217881 108219340 - Gm17041 antisense antisense MGP_C3HHeJ_T0002359.1 MGP_C3HHeJ_G0002278.1 mouse_genomes_project 9 86784789 86784903 - TEC TEC MGP_C3HHeJ_T0002360.1 MGP_C3HHeJ_G0002278.1 mouse_genomes_project 9 86784789 86785261 - TEC TEC MGP_C3HHeJ_T0018368.1 MGP_C3HHeJ_G0015524.1 mouse_genomes_project 9 124263474 124282328 - A730085K08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0094783.1 MGP_C3HHeJ_G0035113.1 mouse_genomes_project 9 121792843 121803879 - MGP_C3HHeJ_P0094783 Xirp1 protein_coding protein_coding MGP_C3HHeJ_T0005342.1 MGP_C3HHeJ_G0004521.1 mouse_genomes_project 9 18106556 18116168 + Fbxl12os antisense antisense MGP_C3HHeJ_T0005343.1 MGP_C3HHeJ_G0004521.1 mouse_genomes_project 9 18106743 18114075 + Fbxl12os antisense antisense MGP_C3HHeJ_T0005344.1 MGP_C3HHeJ_G0004521.1 mouse_genomes_project 9 18106891 18114080 + Fbxl12os antisense antisense MGP_C3HHeJ_T0005345.1 MGP_C3HHeJ_G0004521.1 mouse_genomes_project 9 18113811 18114977 + Fbxl12os antisense antisense MGP_C3HHeJ_T0009256.1 MGP_C3HHeJ_G0007430.1 mouse_genomes_project 9 113563483 113564147 + 2310075C17Rik lincRNA lincRNA MGP_C3HHeJ_T0091453.1 MGP_C3HHeJ_G0034325.1 mouse_genomes_project 9 38080361 38081391 - MGP_C3HHeJ_P0091453 Olfr149 protein_coding protein_coding MGP_C3HHeJ_T0092053.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55135357 55175889 + MGP_C3HHeJ_P0092053 Pstpip1 protein_coding protein_coding MGP_C3HHeJ_T0092054.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55135371 55175877 + Pstpip1 protein_coding retained_intron MGP_C3HHeJ_T0092055.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55135371 55175873 + Pstpip1 protein_coding retained_intron MGP_C3HHeJ_T0092056.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55167432 55173094 + Pstpip1 protein_coding processed_transcript MGP_C3HHeJ_T0092057.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55169235 55170903 + Pstpip1 protein_coding retained_intron MGP_C3HHeJ_T0092058.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55170200 55173153 + Pstpip1 protein_coding retained_intron MGP_C3HHeJ_T0092059.1 MGP_C3HHeJ_G0034530.1 mouse_genomes_project 9 55170200 55171193 + Pstpip1 protein_coding retained_intron MGP_C3HHeJ_T0091079.1 MGP_C3HHeJ_G0034165.1 mouse_genomes_project 9 19886752 19921045 - MGP_C3HHeJ_P0091079 Zfp810 protein_coding unknown_likely_coding MGP_C3HHeJ_T0015888.1 MGP_C3HHeJ_G0013992.1 mouse_genomes_project 9 85182622 85185584 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093918.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108581806 108590524 - MGP_C3HHeJ_P0093918 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093919.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108582336 108598490 - MGP_C3HHeJ_P0093919 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093920.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108582338 108600116 - Slc38a3 protein_coding retained_intron MGP_C3HHeJ_T0093921.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108582342 108598542 - MGP_C3HHeJ_P0093921 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093922.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108582342 108600081 - MGP_C3HHeJ_P0093922 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093923.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108586022 108587637 - MGP_C3HHeJ_P0093923 Slc38a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093924.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108586052 108587224 - MGP_C3HHeJ_P0093924 Slc38a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093925.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108586072 108587015 - Slc38a3 protein_coding retained_intron MGP_C3HHeJ_T0093926.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108587396 108588256 - Slc38a3 protein_coding retained_intron MGP_C3HHeJ_T0093927.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108587891 108590214 - Slc38a3 protein_coding processed_transcript MGP_C3HHeJ_T0093928.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108588624 108600634 - MGP_C3HHeJ_P0093928 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093929.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108588805 108600113 - MGP_C3HHeJ_P0093929 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093930.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108589630 108596536 - MGP_C3HHeJ_P0093930 Slc38a3 protein_coding protein_coding MGP_C3HHeJ_T0093931.1 MGP_C3HHeJ_G0034949.1 mouse_genomes_project 9 108590213 108600126 - Slc38a3 protein_coding processed_transcript MGP_C3HHeJ_T0010999.1 MGP_C3HHeJ_G0009132.1 mouse_genomes_project 9 95191802 95191864 + Mir7656 miRNA miRNA MGP_C3HHeJ_T0093762.1 MGP_C3HHeJ_G0034924.1 mouse_genomes_project 9 107550065 107555110 - MGP_C3HHeJ_P0093762 Grm2 protein_coding protein_coding MGP_C3HHeJ_T0093763.1 MGP_C3HHeJ_G0034924.1 mouse_genomes_project 9 107550087 107564511 - MGP_C3HHeJ_P0093763 Grm2 protein_coding protein_coding MGP_C3HHeJ_T0093764.1 MGP_C3HHeJ_G0034924.1 mouse_genomes_project 9 107551503 107562718 - MGP_C3HHeJ_P0093764 Grm2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093765.1 MGP_C3HHeJ_G0034924.1 mouse_genomes_project 9 107551861 107564513 - MGP_C3HHeJ_P0093765 Grm2 protein_coding protein_coding MGP_C3HHeJ_T0093766.1 MGP_C3HHeJ_G0034924.1 mouse_genomes_project 9 107551960 107553596 - Grm2 protein_coding processed_transcript MGP_C3HHeJ_T0091037.1 MGP_C3HHeJ_G0034143.1 mouse_genomes_project 9 19328769 19362534 - MGP_C3HHeJ_P0091037 Kank2 protein_coding protein_coding MGP_C3HHeJ_T0002368.1 MGP_C3HHeJ_G0002286.1 mouse_genomes_project 9 88971607 88974865 - TEC TEC MGP_C3HHeJ_T0092123.1 MGP_C3HHeJ_G0034553.1 mouse_genomes_project 9 56694408 56722861 + MGP_C3HHeJ_P0092123 Scamp2 protein_coding protein_coding MGP_C3HHeJ_T0093345.1 MGP_C3HHeJ_G0034836.1 mouse_genomes_project 9 98832252 98941355 + MGP_C3HHeJ_P0093345 Nmnat3 protein_coding protein_coding MGP_C3HHeJ_T0093346.1 MGP_C3HHeJ_G0034836.1 mouse_genomes_project 9 98832272 98910198 + Nmnat3 protein_coding processed_transcript MGP_C3HHeJ_T0093347.1 MGP_C3HHeJ_G0034836.1 mouse_genomes_project 9 98841409 98897784 + Nmnat3 protein_coding retained_intron MGP_C3HHeJ_T0093348.1 MGP_C3HHeJ_G0034836.1 mouse_genomes_project 9 98841409 98962134 + MGP_C3HHeJ_P0093348 Nmnat3 protein_coding protein_coding MGP_C3HHeJ_T0093350.1 MGP_C3HHeJ_G0034836.1 mouse_genomes_project 9 98896082 98952307 + MGP_C3HHeJ_P0093350 Nmnat3 protein_coding protein_coding MGP_C3HHeJ_T0094468.1 MGP_C3HHeJ_G0035031.1 mouse_genomes_project 9 111678476 111681757 + MGP_C3HHeJ_P0094468 Ngp protein_coding protein_coding MGP_C3HHeJ_T0091535.1 MGP_C3HHeJ_G0034364.1 mouse_genomes_project 9 41676068 41764078 - MGP_C3HHeJ_P0091535 Pou2f3 protein_coding protein_coding MGP_C3HHeJ_T0091536.1 MGP_C3HHeJ_G0034364.1 mouse_genomes_project 9 41676668 41759593 - MGP_C3HHeJ_P0091536 Pou2f3 protein_coding protein_coding MGP_C3HHeJ_T0091166.1 MGP_C3HHeJ_G0034193.1 mouse_genomes_project 9 28296175 28335376 + MGP_C3HHeJ_P0091166 Snx19 protein_coding protein_coding MGP_C3HHeJ_T0094674.1 MGP_C3HHeJ_G0035080.1 mouse_genomes_project 9 116441220 116475558 - MGP_C3HHeJ_P0094674 Gpd1l protein_coding protein_coding MGP_C3HHeJ_T0094675.1 MGP_C3HHeJ_G0035080.1 mouse_genomes_project 9 116445203 116475704 - MGP_C3HHeJ_P0094675 Gpd1l protein_coding protein_coding MGP_C3HHeJ_T0094676.1 MGP_C3HHeJ_G0035080.1 mouse_genomes_project 9 116452804 116461326 - Gpd1l protein_coding processed_transcript MGP_C3HHeJ_T0092627.1 MGP_C3HHeJ_G0034685.1 mouse_genomes_project 9 70428737 70430347 + MGP_C3HHeJ_P0092627 Gm10642 protein_coding protein_coding MGP_C3HHeJ_T0092615.1 MGP_C3HHeJ_G0034678.1 mouse_genomes_project 9 69758388 69765553 - MGP_C3HHeJ_P0092615 Gcnt3 protein_coding protein_coding MGP_C3HHeJ_T0002324.1 MGP_C3HHeJ_G0002243.1 mouse_genomes_project 9 71632665 71634404 - TEC TEC MGP_C3HHeJ_T0091063.1 MGP_C3HHeJ_G0034157.1 mouse_genomes_project 9 19650846 19666433 - MGP_C3HHeJ_P0091063 Ecsit protein_coding protein_coding MGP_C3HHeJ_T0091064.1 MGP_C3HHeJ_G0034157.1 mouse_genomes_project 9 19650846 19666444 - MGP_C3HHeJ_P0091064 Ecsit protein_coding protein_coding MGP_C3HHeJ_T0091065.1 MGP_C3HHeJ_G0034157.1 mouse_genomes_project 9 19650846 19666408 - MGP_C3HHeJ_P0091065 Ecsit protein_coding protein_coding MGP_C3HHeJ_T0091066.1 MGP_C3HHeJ_G0034157.1 mouse_genomes_project 9 19652091 19666433 - MGP_C3HHeJ_P0091066 Ecsit protein_coding protein_coding MGP_C3HHeJ_T0093804.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108168411 108206378 - MGP_C3HHeJ_P0093804 Mapkapk3 protein_coding protein_coding MGP_C3HHeJ_T0093805.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108168419 108206248 - Mapkapk3 protein_coding retained_intron MGP_C3HHeJ_T0093806.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108169529 108170776 - Mapkapk3 protein_coding retained_intron MGP_C3HHeJ_T0093807.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108169668 108205845 - MGP_C3HHeJ_P0093807 Mapkapk3 protein_coding protein_coding MGP_C3HHeJ_T0093808.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108172352 108176395 - Mapkapk3 protein_coding processed_transcript MGP_C3HHeJ_T0093809.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108173138 108206280 - Mapkapk3 protein_coding retained_intron MGP_C3HHeJ_T0093810.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108178183 108197508 - MGP_C3HHeJ_P0093810 Mapkapk3 protein_coding protein_coding MGP_C3HHeJ_T0093811.1 MGP_C3HHeJ_G0034931.1 mouse_genomes_project 9 108201223 108206280 - Mapkapk3 protein_coding processed_transcript MGP_C3HHeJ_T0090813.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568587 12585063 - MGP_C3HHeJ_P0090813 Cep295 protein_coding protein_coding MGP_C3HHeJ_T0090814.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568587 12609461 - MGP_C3HHeJ_P0090814 Cep295 protein_coding protein_coding MGP_C3HHeJ_T0090815.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568589 12585170 - Cep295 protein_coding retained_intron MGP_C3HHeJ_T0090816.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568592 12592766 - Cep295 protein_coding retained_intron MGP_C3HHeJ_T0090817.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568673 12609416 - MGP_C3HHeJ_P0090817 Cep295 protein_coding protein_coding MGP_C3HHeJ_T0090818.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568769 12606383 - MGP_C3HHeJ_P0090818 Cep295 protein_coding protein_coding MGP_C3HHeJ_T0090819.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12568945 12569630 - Cep295 protein_coding retained_intron MGP_C3HHeJ_T0090820.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12574671 12577852 - MGP_C3HHeJ_P0090820 Cep295 protein_coding protein_coding MGP_C3HHeJ_T0090821.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12577214 12583649 - MGP_C3HHeJ_P0090821 Cep295 protein_coding protein_coding MGP_C3HHeJ_T0090822.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12577277 12578747 - Cep295 protein_coding retained_intron MGP_C3HHeJ_T0090823.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12595144 12602577 - Cep295 protein_coding processed_transcript MGP_C3HHeJ_T0090824.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12596333 12603107 - Cep295 protein_coding retained_intron MGP_C3HHeJ_T0090825.1 MGP_C3HHeJ_G0034048.1 mouse_genomes_project 9 12598255 12603488 - Cep295 protein_coding retained_intron MGP_C3HHeJ_T0092465.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65420789 65478526 - MGP_C3HHeJ_P0092465 Trip4 protein_coding protein_coding MGP_C3HHeJ_T0092466.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65429622 65445584 - Trip4 protein_coding retained_intron MGP_C3HHeJ_T0092467.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65473970 65503731 - MGP_C3HHeJ_P0092467 Trip4 protein_coding protein_coding MGP_C3HHeJ_T0092471.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65488114 65503664 - Trip4 protein_coding processed_transcript MGP_C3HHeJ_T0092472.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65488452 65503731 - Trip4 protein_coding processed_transcript MGP_C3HHeJ_T0092473.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65488918 65503739 - Trip4 protein_coding processed_transcript MGP_C3HHeJ_T0092474.1 MGP_C3HHeJ_G0034650.1 mouse_genomes_project 9 65491841 65503731 - Trip4 protein_coding retained_intron MGP_C3HHeJ_T0093486.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103430674 103434827 + MGP_C3HHeJ_P0093486 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093487.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103430804 103448025 + MGP_C3HHeJ_P0093487 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093488.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103431291 103434839 + MGP_C3HHeJ_P0093488 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093489.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103431670 103448030 + MGP_C3HHeJ_P0093489 Amotl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093490.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103431832 103448033 + MGP_C3HHeJ_P0093490 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093491.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103432431 103434498 + MGP_C3HHeJ_P0093491 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093492.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103432472 103434506 + MGP_C3HHeJ_P0093492 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093493.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103432487 103434318 + MGP_C3HHeJ_P0093493 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093494.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103432570 103442591 + MGP_C3HHeJ_P0093494 Amotl2 protein_coding protein_coding MGP_C3HHeJ_T0093495.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103436408 103442414 + Amotl2 protein_coding processed_transcript MGP_C3HHeJ_T0093496.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103436626 103448030 + Amotl2 protein_coding retained_intron MGP_C3HHeJ_T0093497.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103442418 103446953 + Amotl2 protein_coding processed_transcript MGP_C3HHeJ_T0093498.1 MGP_C3HHeJ_G0034872.1 mouse_genomes_project 9 103445342 103446939 + Amotl2 protein_coding retained_intron MGP_C3HHeJ_T0092844.1 MGP_C3HHeJ_G0034729.1 mouse_genomes_project 9 76072035 76123983 - MGP_C3HHeJ_P0092844 Gfral protein_coding protein_coding MGP_C3HHeJ_T0092845.1 MGP_C3HHeJ_G0034729.1 mouse_genomes_project 9 76072037 76123983 - MGP_C3HHeJ_P0092845 Gfral protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015952.1 MGP_C3HHeJ_G0014056.1 mouse_genomes_project 9 118705560 118706110 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090868.1 MGP_C3HHeJ_G0034073.1 mouse_genomes_project 9 16678629 16679559 + MGP_C3HHeJ_P0090868 protein_coding protein_coding MGP_C3HHeJ_T0094716.1 MGP_C3HHeJ_G0035091.1 mouse_genomes_project 9 120307387 120614998 + MGP_C3HHeJ_P0094716 Itga9 protein_coding protein_coding MGP_C3HHeJ_T0094717.1 MGP_C3HHeJ_G0035091.1 mouse_genomes_project 9 120388876 120514349 + Itga9 protein_coding processed_transcript MGP_C3HHeJ_T0094718.1 MGP_C3HHeJ_G0035091.1 mouse_genomes_project 9 120419864 120611610 + MGP_C3HHeJ_P0094718 Itga9 protein_coding protein_coding MGP_C3HHeJ_T0094719.1 MGP_C3HHeJ_G0035091.1 mouse_genomes_project 9 120514401 120553038 + MGP_C3HHeJ_P0094719 Itga9 protein_coding protein_coding MGP_C3HHeJ_T0094720.1 MGP_C3HHeJ_G0035091.1 mouse_genomes_project 9 120548817 120581744 + Itga9 protein_coding processed_transcript MGP_C3HHeJ_T0094721.1 MGP_C3HHeJ_G0035091.1 mouse_genomes_project 9 120581872 120611199 + Itga9 protein_coding processed_transcript MGP_C3HHeJ_T0002378.1 MGP_C3HHeJ_G0002296.1 mouse_genomes_project 9 92932528 92936597 - TEC TEC MGP_C3HHeJ_T0002309.1 MGP_C3HHeJ_G0002228.1 mouse_genomes_project 9 22383919 22385773 - TEC TEC MGP_C3HHeJ_T0092116.1 MGP_C3HHeJ_G0034550.1 mouse_genomes_project 9 56652345 56663845 + MGP_C3HHeJ_P0092116 Cox5a protein_coding protein_coding MGP_C3HHeJ_T0091660.1 MGP_C3HHeJ_G0034402.1 mouse_genomes_project 9 43428869 43434344 - Tmem25 protein_coding processed_transcript MGP_C3HHeJ_T0091661.1 MGP_C3HHeJ_G0034402.1 mouse_genomes_project 9 43428869 43434344 - MGP_C3HHeJ_P0091661 Tmem25 protein_coding protein_coding MGP_C3HHeJ_T0091662.1 MGP_C3HHeJ_G0034402.1 mouse_genomes_project 9 43428869 43434409 - MGP_C3HHeJ_P0091662 Tmem25 protein_coding protein_coding MGP_C3HHeJ_T0092034.1 MGP_C3HHeJ_G0034524.1 mouse_genomes_project 9 54332912 54453672 + MGP_C3HHeJ_P0092034 Tmem266 protein_coding protein_coding MGP_C3HHeJ_T0092035.1 MGP_C3HHeJ_G0034524.1 mouse_genomes_project 9 54332946 54453672 + MGP_C3HHeJ_P0092035 Tmem266 protein_coding protein_coding MGP_C3HHeJ_T0092036.1 MGP_C3HHeJ_G0034524.1 mouse_genomes_project 9 54339198 54452685 + Tmem266 protein_coding processed_transcript MGP_C3HHeJ_T0090858.1 MGP_C3HHeJ_G0034063.1 mouse_genomes_project 9 16111937 16112991 - MGP_C3HHeJ_P0090858 Olfr24 protein_coding protein_coding MGP_C3HHeJ_T0018351.1 MGP_C3HHeJ_G0015517.1 mouse_genomes_project 9 104166087 104204998 + 5830418P13Rik processed_transcript antisense MGP_C3HHeJ_T0018352.1 MGP_C3HHeJ_G0015517.1 mouse_genomes_project 9 104167481 104168622 + 5830418P13Rik processed_transcript retained_intron MGP_C3HHeJ_T0018353.1 MGP_C3HHeJ_G0015517.1 mouse_genomes_project 9 104167505 104170135 + 5830418P13Rik processed_transcript antisense MGP_C3HHeJ_T0090937.1 MGP_C3HHeJ_G0034105.1 mouse_genomes_project 9 18146281 18160598 + MGP_C3HHeJ_P0090937 Pin1 protein_coding protein_coding MGP_C3HHeJ_T0093510.1 MGP_C3HHeJ_G0034876.1 mouse_genomes_project 9 103838043 103889910 + Rab6b protein_coding processed_transcript MGP_C3HHeJ_T0093511.1 MGP_C3HHeJ_G0034876.1 mouse_genomes_project 9 103838063 103912529 + MGP_C3HHeJ_P0093511 Rab6b protein_coding protein_coding MGP_C3HHeJ_T0101014.1 MGP_C3HHeJ_G0039208.1 mouse_genomes_project 9 125066565 125066698 + Gm23323 snoRNA snoRNA MGP_C3HHeJ_T0005455.1 MGP_C3HHeJ_G0004596.1 mouse_genomes_project 9 107546868 107550535 + Gm28111 antisense antisense MGP_C3HHeJ_T0092838.1 MGP_C3HHeJ_G0034728.1 mouse_genomes_project 9 75918198 76043556 + MGP_C3HHeJ_P0092838 Hmgcll1 protein_coding protein_coding MGP_C3HHeJ_T0092839.1 MGP_C3HHeJ_G0034728.1 mouse_genomes_project 9 75918198 76043556 + MGP_C3HHeJ_P0092839 Hmgcll1 protein_coding protein_coding MGP_C3HHeJ_T0092840.1 MGP_C3HHeJ_G0034728.1 mouse_genomes_project 9 75918327 76041384 + MGP_C3HHeJ_P0092840 Hmgcll1 protein_coding protein_coding MGP_C3HHeJ_T0092841.1 MGP_C3HHeJ_G0034728.1 mouse_genomes_project 9 75918357 75980772 + Hmgcll1 protein_coding retained_intron MGP_C3HHeJ_T0092842.1 MGP_C3HHeJ_G0034728.1 mouse_genomes_project 9 75918358 75977471 + Hmgcll1 protein_coding retained_intron MGP_C3HHeJ_T0092843.1 MGP_C3HHeJ_G0034728.1 mouse_genomes_project 9 75918398 76041295 + MGP_C3HHeJ_P0092843 Hmgcll1 protein_coding protein_coding MGP_C3HHeJ_T0005444.1 MGP_C3HHeJ_G0004587.1 mouse_genomes_project 9 104217263 104239202 + Gm16252 antisense antisense MGP_C3HHeJ_T0094480.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111799503 111886918 + MGP_C3HHeJ_P0094480 Setd2 protein_coding protein_coding MGP_C3HHeJ_T0094481.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111814873 111886899 + MGP_C3HHeJ_P0094481 Setd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094482.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111818199 111831317 + MGP_C3HHeJ_P0094482 Setd2 protein_coding protein_coding MGP_C3HHeJ_T0094483.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111828025 111834640 + Setd2 protein_coding retained_intron MGP_C3HHeJ_T0094484.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111828107 111837433 + Setd2 protein_coding retained_intron MGP_C3HHeJ_T0094485.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111840321 111886892 + MGP_C3HHeJ_P0094485 Setd2 protein_coding protein_coding MGP_C3HHeJ_T0094486.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111840583 111862635 + MGP_C3HHeJ_P0094486 Setd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094487.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111862499 111873427 + Setd2 protein_coding retained_intron MGP_C3HHeJ_T0094488.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111870492 111886433 + MGP_C3HHeJ_P0094488 Setd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094489.1 MGP_C3HHeJ_G0035034.1 mouse_genomes_project 9 111885885 111886892 + Setd2 protein_coding retained_intron MGP_C3HHeJ_T0002371.1 MGP_C3HHeJ_G0002289.1 mouse_genomes_project 9 91462690 91465161 - TEC TEC MGP_C3HHeJ_T0091868.1 MGP_C3HHeJ_G0034470.1 mouse_genomes_project 9 49626557 49633415 - MGP_C3HHeJ_P0091868 2310030G06Rik protein_coding protein_coding MGP_C3HHeJ_T0094554.1 MGP_C3HHeJ_G0035051.1 mouse_genomes_project 9 112270602 112275711 - MGP_C3HHeJ_P0094554 Rtp3 protein_coding protein_coding MGP_C3HHeJ_T0094555.1 MGP_C3HHeJ_G0035051.1 mouse_genomes_project 9 112272711 112276581 - MGP_C3HHeJ_P0094555 Rtp3 protein_coding protein_coding MGP_C3HHeJ_T0005339.1 MGP_C3HHeJ_G0004519.1 mouse_genomes_project 9 6314756 6341816 + Gm16833 antisense antisense MGP_C3HHeJ_T0005340.1 MGP_C3HHeJ_G0004519.1 mouse_genomes_project 9 6341615 6341816 + Gm16833 antisense antisense MGP_C3HHeJ_T0002338.1 MGP_C3HHeJ_G0002257.1 mouse_genomes_project 9 72505995 72507483 + TEC TEC MGP_C3HHeJ_T0091912.1 MGP_C3HHeJ_G0034478.1 mouse_genomes_project 9 49954598 49976012 - MGP_C3HHeJ_P0091912 Layn protein_coding protein_coding MGP_C3HHeJ_T0099719.1 MGP_C3HHeJ_G0037913.1 mouse_genomes_project 9 86955849 86955963 - Gm25949 snRNA snRNA MGP_C3HHeJ_T0099691.1 MGP_C3HHeJ_G0037885.1 mouse_genomes_project 9 46278857 46278964 - Gm22286 snRNA snRNA MGP_C3HHeJ_T0005399.1 MGP_C3HHeJ_G0004558.1 mouse_genomes_project 9 72163111 72213214 - BC065403 antisense antisense MGP_C3HHeJ_T0005400.1 MGP_C3HHeJ_G0004558.1 mouse_genomes_project 9 72211913 72213136 - BC065403 antisense antisense MGP_C3HHeJ_T0092742.1 MGP_C3HHeJ_G0034701.1 mouse_genomes_project 9 72754676 72781200 + MGP_C3HHeJ_P0092742 Pygo1 protein_coding protein_coding MGP_C3HHeJ_T0092194.1 MGP_C3HHeJ_G0034571.1 mouse_genomes_project 9 57443906 57454065 + MGP_C3HHeJ_P0092194 Stoml1 protein_coding protein_coding MGP_C3HHeJ_T0092135.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56936014 56982352 - MGP_C3HHeJ_P0092135 Arid3b protein_coding protein_coding MGP_C3HHeJ_T0092136.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56936017 56982354 - MGP_C3HHeJ_P0092136 Arid3b protein_coding protein_coding MGP_C3HHeJ_T0092137.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56936020 56937309 - Arid3b protein_coding processed_transcript MGP_C3HHeJ_T0092138.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56936173 56979877 - MGP_C3HHeJ_P0092138 Arid3b protein_coding protein_coding MGP_C3HHeJ_T0092139.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56937821 56941871 - MGP_C3HHeJ_P0092139 Arid3b protein_coding protein_coding MGP_C3HHeJ_T0092140.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56938083 56982124 - MGP_C3HHeJ_P0092140 Arid3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092141.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56940335 56982407 - MGP_C3HHeJ_P0092141 Arid3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092142.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56940336 56982439 - MGP_C3HHeJ_P0092142 Arid3b protein_coding protein_coding MGP_C3HHeJ_T0092143.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56943799 56966272 - MGP_C3HHeJ_P0092143 Arid3b protein_coding protein_coding MGP_C3HHeJ_T0092144.1 MGP_C3HHeJ_G0034562.1 mouse_genomes_project 9 56953778 56982416 - Arid3b protein_coding retained_intron MGP_C3HHeJ_T0100960.1 MGP_C3HHeJ_G0039154.1 mouse_genomes_project 9 36822071 36822195 + Gm23271 snoRNA snoRNA MGP_C3HHeJ_T0005479.1 MGP_C3HHeJ_G0004615.1 mouse_genomes_project 9 116320170 116322325 + Gm9888 antisense antisense MGP_C3HHeJ_T0015846.1 MGP_C3HHeJ_G0013950.1 mouse_genomes_project 9 62883119 62884029 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0018328.1 MGP_C3HHeJ_G0015509.1 mouse_genomes_project 9 83334156 83335606 + Gm29054 processed_transcript TEC MGP_C3HHeJ_T0018329.1 MGP_C3HHeJ_G0015509.1 mouse_genomes_project 9 83334187 83335523 + Gm29054 processed_transcript antisense MGP_C3HHeJ_T0094206.1 MGP_C3HHeJ_G0034988.1 mouse_genomes_project 9 109552551 109553585 - Ndufaf3 protein_coding retained_intron MGP_C3HHeJ_T0094207.1 MGP_C3HHeJ_G0034988.1 mouse_genomes_project 9 109552633 109553602 - MGP_C3HHeJ_P0094207 Ndufaf3 protein_coding protein_coding MGP_C3HHeJ_T0094208.1 MGP_C3HHeJ_G0034988.1 mouse_genomes_project 9 109552851 109553605 - Ndufaf3 protein_coding retained_intron MGP_C3HHeJ_T0005417.1 MGP_C3HHeJ_G0004570.1 mouse_genomes_project 9 83610252 83639272 + Gm2087 antisense antisense MGP_C3HHeJ_T0094596.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112619808 112705532 + MGP_C3HHeJ_P0094596 Trank1 protein_coding protein_coding MGP_C3HHeJ_T0094597.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112620009 112666627 + Trank1 protein_coding processed_transcript MGP_C3HHeJ_T0094598.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112620165 112654164 + MGP_C3HHeJ_P0094598 Trank1 protein_coding protein_coding MGP_C3HHeJ_T0094599.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112620298 112693919 + MGP_C3HHeJ_P0094599 Trank1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094600.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112683880 112705532 + Trank1 protein_coding processed_transcript MGP_C3HHeJ_T0094601.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112683943 112699003 + Trank1 protein_coding processed_transcript MGP_C3HHeJ_T0094602.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112683948 112695109 + Trank1 protein_coding processed_transcript MGP_C3HHeJ_T0094603.1 MGP_C3HHeJ_G0035057.1 mouse_genomes_project 9 112696110 112699921 + Trank1 protein_coding retained_intron MGP_C3HHeJ_T0090895.1 MGP_C3HHeJ_G0034099.1 mouse_genomes_project 9 17921236 17952525 - protein_coding retained_intron MGP_C3HHeJ_T0090896.1 MGP_C3HHeJ_G0034099.1 mouse_genomes_project 9 17922593 17952566 - MGP_C3HHeJ_P0090896 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090897.1 MGP_C3HHeJ_G0034099.1 mouse_genomes_project 9 17923268 17952557 - protein_coding retained_intron MGP_C3HHeJ_T0090898.1 MGP_C3HHeJ_G0034099.1 mouse_genomes_project 9 17924505 17930378 - protein_coding processed_transcript MGP_C3HHeJ_T0090899.1 MGP_C3HHeJ_G0034099.1 mouse_genomes_project 9 17931031 17952730 - protein_coding retained_intron MGP_C3HHeJ_T0090900.1 MGP_C3HHeJ_G0034099.1 mouse_genomes_project 9 17933320 17952395 - MGP_C3HHeJ_P0090900 protein_coding protein_coding MGP_C3HHeJ_T0092706.1 MGP_C3HHeJ_G0034696.1 mouse_genomes_project 9 72244198 72254888 + MGP_C3HHeJ_P0092706 Mns1 protein_coding protein_coding MGP_C3HHeJ_T0092707.1 MGP_C3HHeJ_G0034696.1 mouse_genomes_project 9 72244709 72258828 + MGP_C3HHeJ_P0092707 Mns1 protein_coding protein_coding MGP_C3HHeJ_T0092708.1 MGP_C3HHeJ_G0034696.1 mouse_genomes_project 9 72244718 72268112 + MGP_C3HHeJ_P0092708 Mns1 protein_coding protein_coding MGP_C3HHeJ_T0009156.1 MGP_C3HHeJ_G0007351.1 mouse_genomes_project 9 47860062 47864181 - 1700042D02Rik lincRNA lincRNA MGP_C3HHeJ_T0002352.1 MGP_C3HHeJ_G0002271.1 mouse_genomes_project 9 77296562 77297572 - TEC TEC MGP_C3HHeJ_T0093379.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819158 99839519 + MGP_C3HHeJ_P0093379 Cep70 protein_coding protein_coding MGP_C3HHeJ_T0093380.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819233 99869752 + MGP_C3HHeJ_P0093380 Cep70 protein_coding protein_coding MGP_C3HHeJ_T0093381.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819244 99830245 + Cep70 protein_coding retained_intron MGP_C3HHeJ_T0093382.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819252 99840685 + MGP_C3HHeJ_P0093382 Cep70 protein_coding protein_coding MGP_C3HHeJ_T0093383.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819254 99867333 + MGP_C3HHeJ_P0093383 Cep70 protein_coding protein_coding MGP_C3HHeJ_T0093384.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819273 99838378 + MGP_C3HHeJ_P0093384 Cep70 protein_coding protein_coding MGP_C3HHeJ_T0093385.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99819317 99847388 + MGP_C3HHeJ_P0093385 Cep70 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093386.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99822076 99838823 + Cep70 protein_coding retained_intron MGP_C3HHeJ_T0093387.1 MGP_C3HHeJ_G0034851.1 mouse_genomes_project 9 99860803 99865699 + Cep70 protein_coding retained_intron MGP_C3HHeJ_T0002405.1 MGP_C3HHeJ_G0002323.1 mouse_genomes_project 9 103846636 103849110 + TEC TEC MGP_C3HHeJ_T0092330.1 MGP_C3HHeJ_G0034606.1 mouse_genomes_project 9 62207963 62228589 - MGP_C3HHeJ_P0092330 Fem1b protein_coding protein_coding MGP_C3HHeJ_T0094807.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122782120 122807569 + MGP_C3HHeJ_P0094807 Ctnnb1 protein_coding protein_coding MGP_C3HHeJ_T0094808.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122786299 122817441 + MGP_C3HHeJ_P0094808 Ctnnb1 protein_coding protein_coding MGP_C3HHeJ_T0094809.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122786374 122817440 + MGP_C3HHeJ_P0094809 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094810.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122786385 122813381 + Ctnnb1 protein_coding retained_intron MGP_C3HHeJ_T0094811.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122786477 122817440 + MGP_C3HHeJ_P0094811 Ctnnb1 protein_coding protein_coding MGP_C3HHeJ_T0094812.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122786522 122808644 + MGP_C3HHeJ_P0094812 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094813.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122786717 122808227 + MGP_C3HHeJ_P0094813 Ctnnb1 protein_coding protein_coding MGP_C3HHeJ_T0094814.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122807154 122816451 + MGP_C3HHeJ_P0094814 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094815.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122808022 122812333 + MGP_C3HHeJ_P0094815 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094816.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122812058 122812775 + Ctnnb1 protein_coding processed_transcript MGP_C3HHeJ_T0094817.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122812230 122814573 + Ctnnb1 protein_coding processed_transcript MGP_C3HHeJ_T0094818.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122812390 122814468 + MGP_C3HHeJ_P0094818 Ctnnb1 protein_coding protein_coding MGP_C3HHeJ_T0094819.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122812847 122815959 + MGP_C3HHeJ_P0094819 Ctnnb1 protein_coding protein_coding MGP_C3HHeJ_T0094820.1 MGP_C3HHeJ_G0035123.1 mouse_genomes_project 9 122813800 122814758 + Ctnnb1 protein_coding retained_intron MGP_C3HHeJ_T0099731.1 MGP_C3HHeJ_G0037925.1 mouse_genomes_project 9 107732311 107732416 - Gm22384 snRNA snRNA MGP_C3HHeJ_T0090852.1 MGP_C3HHeJ_G0034060.1 mouse_genomes_project 9 15785501 15808555 - MGP_C3HHeJ_P0090852 Zfp558 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090853.1 MGP_C3HHeJ_G0034060.1 mouse_genomes_project 9 15786118 15803851 - MGP_C3HHeJ_P0090853 Zfp558 protein_coding protein_coding MGP_C3HHeJ_T0090854.1 MGP_C3HHeJ_G0034060.1 mouse_genomes_project 9 15789583 15808560 - Zfp558 protein_coding processed_transcript MGP_C3HHeJ_T0090855.1 MGP_C3HHeJ_G0034060.1 mouse_genomes_project 9 15803181 15803714 - Zfp558 protein_coding processed_transcript MGP_C3HHeJ_T0093986.1 MGP_C3HHeJ_G0034955.1 mouse_genomes_project 9 108849676 108863192 + MGP_C3HHeJ_P0093986 Mst1r protein_coding protein_coding MGP_C3HHeJ_T0093987.1 MGP_C3HHeJ_G0034955.1 mouse_genomes_project 9 108849710 108863190 + MGP_C3HHeJ_P0093987 Mst1r protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093988.1 MGP_C3HHeJ_G0034955.1 mouse_genomes_project 9 108857812 108858538 + Mst1r protein_coding retained_intron MGP_C3HHeJ_T0093989.1 MGP_C3HHeJ_G0034955.1 mouse_genomes_project 9 108859033 108859714 + Mst1r protein_coding retained_intron MGP_C3HHeJ_T0090873.1 MGP_C3HHeJ_G0034078.1 mouse_genomes_project 9 16829017 16829965 - MGP_C3HHeJ_P0090873 Olfr850 protein_coding protein_coding MGP_C3HHeJ_T0094358.1 MGP_C3HHeJ_G0035013.1 mouse_genomes_project 9 110212384 110611322 - MGP_C3HHeJ_P0094358 protein_coding protein_coding MGP_C3HHeJ_T0010992.1 MGP_C3HHeJ_G0009125.1 mouse_genomes_project 9 70582556 70582638 - Gm25149 miRNA miRNA MGP_C3HHeJ_T0092021.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54224007 54288991 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0092022.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54224008 54289021 - MGP_C3HHeJ_P0092022 Nrg4 protein_coding protein_coding MGP_C3HHeJ_T0092023.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54225007 54246814 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0092024.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54225083 54288983 - MGP_C3HHeJ_P0092024 Nrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092025.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54225086 54332748 - MGP_C3HHeJ_P0092025 Nrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092026.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54225087 54288968 - MGP_C3HHeJ_P0092026 Nrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092027.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54225151 54288977 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0092028.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54228017 54288968 - MGP_C3HHeJ_P0092028 Nrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092029.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54245052 54288998 - MGP_C3HHeJ_P0092029 Nrg4 protein_coding protein_coding MGP_C3HHeJ_T0092030.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54246416 54332843 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0092031.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54253465 54288983 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0092032.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54263653 54288994 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0092033.1 MGP_C3HHeJ_G0034523.1 mouse_genomes_project 9 54312207 54331191 - Nrg4 protein_coding processed_transcript MGP_C3HHeJ_T0093103.1 MGP_C3HHeJ_G0034786.1 mouse_genomes_project 9 87959747 87988219 - MGP_C3HHeJ_P0093103 Tbx18 protein_coding protein_coding MGP_C3HHeJ_T0093104.1 MGP_C3HHeJ_G0034786.1 mouse_genomes_project 9 87981362 87987460 - Tbx18 protein_coding processed_transcript MGP_C3HHeJ_T0010993.1 MGP_C3HHeJ_G0009126.1 mouse_genomes_project 9 71820813 71820891 + Gm27450 miRNA miRNA MGP_C3HHeJ_T0018305.1 MGP_C3HHeJ_G0015499.1 mouse_genomes_project 9 59248807 59253867 - Gm15507 processed_transcript processed_transcript MGP_C3HHeJ_T0018306.1 MGP_C3HHeJ_G0015499.1 mouse_genomes_project 9 59249009 59253867 - Gm15507 processed_transcript processed_transcript MGP_C3HHeJ_T0018307.1 MGP_C3HHeJ_G0015499.1 mouse_genomes_project 9 59251892 59253897 - Gm15507 processed_transcript processed_transcript MGP_C3HHeJ_T0094312.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 109997661 110014069 + MGP_C3HHeJ_P0094312 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094313.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 109997681 110014016 + MGP_C3HHeJ_P0094313 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094314.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 109997698 110014016 + Shisa5 protein_coding retained_intron MGP_C3HHeJ_T0094315.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 109999512 110013035 + MGP_C3HHeJ_P0094315 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094316.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 109999702 110007691 + MGP_C3HHeJ_P0094316 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094317.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007396 110013247 + MGP_C3HHeJ_P0094317 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094318.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007455 110012670 + MGP_C3HHeJ_P0094318 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094319.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007459 110013316 + MGP_C3HHeJ_P0094319 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094320.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007480 110012644 + MGP_C3HHeJ_P0094320 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094321.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007498 110013305 + MGP_C3HHeJ_P0094321 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094322.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007500 110012703 + MGP_C3HHeJ_P0094322 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094323.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007502 110013023 + MGP_C3HHeJ_P0094323 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094324.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007511 110012666 + MGP_C3HHeJ_P0094324 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094325.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110007735 110013150 + MGP_C3HHeJ_P0094325 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094326.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110009154 110012994 + Shisa5 protein_coding processed_transcript MGP_C3HHeJ_T0094327.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110011163 110013499 + MGP_C3HHeJ_P0094327 Shisa5 protein_coding protein_coding MGP_C3HHeJ_T0094328.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110011248 110012843 + Shisa5 protein_coding processed_transcript MGP_C3HHeJ_T0094329.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110011312 110012783 + Shisa5 protein_coding processed_transcript MGP_C3HHeJ_T0094330.1 MGP_C3HHeJ_G0035004.1 mouse_genomes_project 9 110012231 110012767 + Shisa5 protein_coding retained_intron MGP_C3HHeJ_T0091836.1 MGP_C3HHeJ_G0034465.1 mouse_genomes_project 9 49486651 49488071 + MGP_C3HHeJ_P0091836 Timm8b protein_coding protein_coding MGP_C3HHeJ_T0100963.1 MGP_C3HHeJ_G0039157.1 mouse_genomes_project 9 39282749 39282835 + Snord14d snoRNA snoRNA MGP_C3HHeJ_T0092046.1 MGP_C3HHeJ_G0034527.1 mouse_genomes_project 9 54569813 54934960 - MGP_C3HHeJ_P0092046 Scaper protein_coding protein_coding MGP_C3HHeJ_T0092047.1 MGP_C3HHeJ_G0034527.1 mouse_genomes_project 9 54760087 54954060 - MGP_C3HHeJ_P0092047 Scaper protein_coding unknown_likely_coding MGP_C3HHeJ_T0090956.1 MGP_C3HHeJ_G0034113.1 mouse_genomes_project 9 18412375 18457957 - MGP_C3HHeJ_P0090956 Dnmt1 protein_coding protein_coding MGP_C3HHeJ_T0092709.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72256457 72302389 - MGP_C3HHeJ_P0092709 Tex9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092710.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72264661 72302389 - MGP_C3HHeJ_P0092710 Tex9 protein_coding protein_coding MGP_C3HHeJ_T0092711.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72266430 72283351 - Tex9 protein_coding retained_intron MGP_C3HHeJ_T0092712.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72267161 72302645 - MGP_C3HHeJ_P0092712 Tex9 protein_coding protein_coding MGP_C3HHeJ_T0092713.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72267180 72302430 - MGP_C3HHeJ_P0092713 Tex9 protein_coding protein_coding MGP_C3HHeJ_T0092714.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72267189 72302640 - MGP_C3HHeJ_P0092714 Tex9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092715.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72267265 72302534 - MGP_C3HHeJ_P0092715 Tex9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092716.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72268012 72302394 - Tex9 protein_coding retained_intron MGP_C3HHeJ_T0092717.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72268031 72289168 - Tex9 protein_coding processed_transcript MGP_C3HHeJ_T0092718.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72268061 72297551 - MGP_C3HHeJ_P0092718 Tex9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092719.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72286603 72287469 - Tex9 protein_coding retained_intron MGP_C3HHeJ_T0092720.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72286703 72296310 - MGP_C3HHeJ_P0092720 Tex9 protein_coding protein_coding MGP_C3HHeJ_T0092721.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72286704 72302372 - MGP_C3HHeJ_P0092721 Tex9 protein_coding protein_coding MGP_C3HHeJ_T0092722.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72289104 72302522 - Tex9 protein_coding retained_intron MGP_C3HHeJ_T0092723.1 MGP_C3HHeJ_G0034697.1 mouse_genomes_project 9 72289283 72302368 - Tex9 protein_coding retained_intron MGP_C3HHeJ_T0090794.1 MGP_C3HHeJ_G0034040.1 mouse_genomes_project 9 12079213 12089793 + MGP_C3HHeJ_P0090794 Gpr83 protein_coding protein_coding MGP_C3HHeJ_T0090795.1 MGP_C3HHeJ_G0034040.1 mouse_genomes_project 9 12079257 12089314 + MGP_C3HHeJ_P0090795 Gpr83 protein_coding protein_coding MGP_C3HHeJ_T0090796.1 MGP_C3HHeJ_G0034040.1 mouse_genomes_project 9 12084343 12089793 + Gpr83 protein_coding retained_intron MGP_C3HHeJ_T0099698.1 MGP_C3HHeJ_G0037892.1 mouse_genomes_project 9 62882280 62882422 + Gm25995 snRNA snRNA MGP_C3HHeJ_T0009246.1 MGP_C3HHeJ_G0007424.1 mouse_genomes_project 9 109554207 109555849 + 4833445I07Rik lincRNA lincRNA MGP_C3HHeJ_T0009247.1 MGP_C3HHeJ_G0007424.1 mouse_genomes_project 9 109554567 109555449 + 4833445I07Rik lincRNA lincRNA MGP_C3HHeJ_T0005482.1 MGP_C3HHeJ_G0004618.1 mouse_genomes_project 9 117605278 117616595 - Gm16142 antisense antisense MGP_C3HHeJ_T0094661.1 MGP_C3HHeJ_G0035068.1 mouse_genomes_project 9 115842130 115842554 + MGP_C3HHeJ_P0094661 Bcl2a1c protein_coding protein_coding MGP_C3HHeJ_T0093333.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97585776 97626464 - MGP_C3HHeJ_P0093333 Slc25a36 protein_coding protein_coding MGP_C3HHeJ_T0093334.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97586380 97597600 - MGP_C3HHeJ_P0093334 Slc25a36 protein_coding protein_coding MGP_C3HHeJ_T0093335.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97592272 97626314 - MGP_C3HHeJ_P0093335 Slc25a36 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093336.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97592558 97598381 - Slc25a36 protein_coding retained_intron MGP_C3HHeJ_T0093337.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97593519 97603069 - Slc25a36 protein_coding processed_transcript MGP_C3HHeJ_T0093338.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97593685 97603186 - Slc25a36 protein_coding processed_transcript MGP_C3HHeJ_T0093339.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97602743 97613062 - MGP_C3HHeJ_P0093339 Slc25a36 protein_coding protein_coding MGP_C3HHeJ_T0093340.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97605654 97626294 - Slc25a36 protein_coding retained_intron MGP_C3HHeJ_T0093341.1 MGP_C3HHeJ_G0034833.1 mouse_genomes_project 9 97612144 97626340 - Slc25a36 protein_coding retained_intron MGP_C3HHeJ_T0093163.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90357610 90369641 + MGP_C3HHeJ_P0093163 Ctsh protein_coding protein_coding MGP_C3HHeJ_T0093164.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90357725 90381434 + MGP_C3HHeJ_P0093164 Ctsh protein_coding protein_coding MGP_C3HHeJ_T0093165.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90357964 90381432 + Ctsh protein_coding retained_intron MGP_C3HHeJ_T0093166.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90357979 90358805 + Ctsh protein_coding retained_intron MGP_C3HHeJ_T0093167.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90357995 90368458 + MGP_C3HHeJ_P0093167 Ctsh protein_coding protein_coding MGP_C3HHeJ_T0093168.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90357996 90381432 + MGP_C3HHeJ_P0093168 Ctsh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093169.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90358012 90371561 + Ctsh protein_coding retained_intron MGP_C3HHeJ_T0093170.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90358017 90381086 + MGP_C3HHeJ_P0093170 Ctsh protein_coding protein_coding MGP_C3HHeJ_T0093171.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90364347 90365817 + Ctsh protein_coding retained_intron MGP_C3HHeJ_T0093172.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90366743 90376409 + Ctsh protein_coding retained_intron MGP_C3HHeJ_T0093173.1 MGP_C3HHeJ_G0034803.1 mouse_genomes_project 9 90376219 90381094 + Ctsh protein_coding retained_intron MGP_C3HHeJ_T0015891.1 MGP_C3HHeJ_G0013995.1 mouse_genomes_project 9 86541857 86542401 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091441.1 MGP_C3HHeJ_G0034319.1 mouse_genomes_project 9 37940124 37941179 - MGP_C3HHeJ_P0091441 Olfr959 protein_coding protein_coding MGP_C3HHeJ_T0094258.1 MGP_C3HHeJ_G0034996.1 mouse_genomes_project 9 109809675 109820171 + MGP_C3HHeJ_P0094258 protein_coding protein_coding MGP_C3HHeJ_T0094259.1 MGP_C3HHeJ_G0034996.1 mouse_genomes_project 9 109809680 109812457 + MGP_C3HHeJ_P0094259 protein_coding protein_coding MGP_C3HHeJ_T0094260.1 MGP_C3HHeJ_G0034996.1 mouse_genomes_project 9 109809728 109812941 + MGP_C3HHeJ_P0094260 protein_coding protein_coding MGP_C3HHeJ_T0094261.1 MGP_C3HHeJ_G0034996.1 mouse_genomes_project 9 109813260 109815417 + MGP_C3HHeJ_P0094261 protein_coding protein_coding MGP_C3HHeJ_T0094262.1 MGP_C3HHeJ_G0034996.1 mouse_genomes_project 9 109814763 109815662 + protein_coding retained_intron MGP_C3HHeJ_T0094263.1 MGP_C3HHeJ_G0034996.1 mouse_genomes_project 9 109816171 109817449 + protein_coding retained_intron MGP_C3HHeJ_T0099706.1 MGP_C3HHeJ_G0037900.1 mouse_genomes_project 9 70275078 70275177 + Gm23588 snRNA snRNA MGP_C3HHeJ_T0101012.1 MGP_C3HHeJ_G0039206.1 mouse_genomes_project 9 121927401 121927604 + Gm26448 snoRNA snoRNA MGP_C3HHeJ_T0091383.1 MGP_C3HHeJ_G0034267.1 mouse_genomes_project 9 36391231 36392176 + MGP_C3HHeJ_P0091383 Olfr888 protein_coding protein_coding MGP_C3HHeJ_T0002397.1 MGP_C3HHeJ_G0002315.1 mouse_genomes_project 9 101873877 101875232 - TEC TEC MGP_C3HHeJ_T0090961.1 MGP_C3HHeJ_G0034117.1 mouse_genomes_project 9 18541204 18542363 + MGP_C3HHeJ_P0090961 Icam4 protein_coding protein_coding MGP_C3HHeJ_T0005410.1 MGP_C3HHeJ_G0004567.1 mouse_genomes_project 9 80417426 80419553 - Gm27227 antisense antisense MGP_C3HHeJ_T0094114.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109307292 109352630 + MGP_C3HHeJ_P0094114 Usp4 protein_coding protein_coding MGP_C3HHeJ_T0094115.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109307313 109345218 + MGP_C3HHeJ_P0094115 Usp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094116.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109307336 109317266 + Usp4 protein_coding retained_intron MGP_C3HHeJ_T0094117.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109307352 109352605 + MGP_C3HHeJ_P0094117 Usp4 protein_coding protein_coding MGP_C3HHeJ_T0094118.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109315907 109317381 + Usp4 protein_coding processed_transcript MGP_C3HHeJ_T0094119.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109319170 109322189 + Usp4 protein_coding retained_intron MGP_C3HHeJ_T0094120.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109327247 109329573 + Usp4 protein_coding retained_intron MGP_C3HHeJ_T0094121.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109332023 109352344 + MGP_C3HHeJ_P0094121 Usp4 protein_coding protein_coding MGP_C3HHeJ_T0094122.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109340694 109351877 + MGP_C3HHeJ_P0094122 Usp4 protein_coding protein_coding MGP_C3HHeJ_T0094123.1 MGP_C3HHeJ_G0034977.1 mouse_genomes_project 9 109350960 109352330 + Usp4 protein_coding retained_intron MGP_C3HHeJ_T0091390.1 MGP_C3HHeJ_G0034274.1 mouse_genomes_project 9 36567918 36568869 + MGP_C3HHeJ_P0091390 Olfr895 protein_coding protein_coding MGP_C3HHeJ_T0091831.1 MGP_C3HHeJ_G0034461.1 mouse_genomes_project 9 49410370 49431850 - MGP_C3HHeJ_P0091831 Bco2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091406.1 MGP_C3HHeJ_G0034290.1 mouse_genomes_project 9 36986965 36987895 - MGP_C3HHeJ_P0091406 Olfr917 protein_coding protein_coding MGP_C3HHeJ_T0002330.1 MGP_C3HHeJ_G0002249.1 mouse_genomes_project 9 71799036 71800687 - TEC TEC MGP_C3HHeJ_T0093373.1 MGP_C3HHeJ_G0034848.1 mouse_genomes_project 9 99571788 99602648 - MGP_C3HHeJ_P0093373 Gm1123 protein_coding protein_coding MGP_C3HHeJ_T0009203.1 MGP_C3HHeJ_G0007390.1 mouse_genomes_project 9 89394463 89413049 - lincRNA lincRNA MGP_C3HHeJ_T0010998.1 MGP_C3HHeJ_G0009131.1 mouse_genomes_project 9 92656094 92656198 - Mir6386 miRNA miRNA MGP_C3HHeJ_T0091075.1 MGP_C3HHeJ_G0034162.1 mouse_genomes_project 9 19774887 19788422 + MGP_C3HHeJ_P0091075 Zfp872 protein_coding protein_coding MGP_C3HHeJ_T0091076.1 MGP_C3HHeJ_G0034162.1 mouse_genomes_project 9 19783365 19786923 + MGP_C3HHeJ_P0091076 Zfp872 protein_coding protein_coding MGP_C3HHeJ_T0099724.1 MGP_C3HHeJ_G0037918.1 mouse_genomes_project 9 94717905 94718062 + Gm24200 snRNA snRNA MGP_C3HHeJ_T0099687.1 MGP_C3HHeJ_G0037881.1 mouse_genomes_project 9 43091978 43092095 - Gm22540 snRNA snRNA MGP_C3HHeJ_T0091247.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33229339 33279774 - MGP_C3HHeJ_P0091247 Fam118b protein_coding protein_coding MGP_C3HHeJ_T0091248.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33229405 33279799 - MGP_C3HHeJ_P0091248 Fam118b protein_coding protein_coding MGP_C3HHeJ_T0091249.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33229405 33279771 - MGP_C3HHeJ_P0091249 Fam118b protein_coding protein_coding MGP_C3HHeJ_T0091250.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33229620 33248054 - MGP_C3HHeJ_P0091250 Fam118b protein_coding protein_coding MGP_C3HHeJ_T0091251.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33233917 33279761 - MGP_C3HHeJ_P0091251 Fam118b protein_coding protein_coding MGP_C3HHeJ_T0091252.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33244666 33279774 - Fam118b protein_coding retained_intron MGP_C3HHeJ_T0091253.1 MGP_C3HHeJ_G0034214.1 mouse_genomes_project 9 33278309 33279774 - Fam118b protein_coding retained_intron MGP_C3HHeJ_T0010948.1 MGP_C3HHeJ_G0009081.1 mouse_genomes_project 9 6988875 6988966 + Mir6237 miRNA miRNA MGP_C3HHeJ_T0091279.1 MGP_C3HHeJ_G0034225.1 mouse_genomes_project 9 33798300 33811718 - MGP_C3HHeJ_P0091279 Gm27235 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091361.1 MGP_C3HHeJ_G0034251.1 mouse_genomes_project 9 35780477 35788865 - MGP_C3HHeJ_P0091361 Nrgn protein_coding protein_coding MGP_C3HHeJ_T0091362.1 MGP_C3HHeJ_G0034251.1 mouse_genomes_project 9 35780939 35782124 - Nrgn protein_coding processed_transcript MGP_C3HHeJ_T0092222.1 MGP_C3HHeJ_G0034581.1 mouse_genomes_project 9 58565049 58597711 - MGP_C3HHeJ_P0092222 Bbs4 protein_coding protein_coding MGP_C3HHeJ_T0093996.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108892835 108914160 + Traip protein_coding retained_intron MGP_C3HHeJ_T0093997.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108893655 108914905 + MGP_C3HHeJ_P0093997 Traip protein_coding protein_coding MGP_C3HHeJ_T0093998.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108893666 108901131 + Traip protein_coding processed_transcript MGP_C3HHeJ_T0093999.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108893687 108903689 + MGP_C3HHeJ_P0093999 Traip protein_coding protein_coding MGP_C3HHeJ_T0094000.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108903034 108904305 + Traip protein_coding processed_transcript MGP_C3HHeJ_T0094001.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108904815 108911281 + Traip protein_coding retained_intron MGP_C3HHeJ_T0094002.1 MGP_C3HHeJ_G0034958.1 mouse_genomes_project 9 108904876 108911378 + Traip protein_coding retained_intron MGP_C3HHeJ_T0093015.1 MGP_C3HHeJ_G0034768.1 mouse_genomes_project 9 83731828 83825152 + MGP_C3HHeJ_P0093015 Sh3bgrl2 protein_coding protein_coding MGP_C3HHeJ_T0093016.1 MGP_C3HHeJ_G0034768.1 mouse_genomes_project 9 83731830 83732513 + Sh3bgrl2 protein_coding retained_intron MGP_C3HHeJ_T0093017.1 MGP_C3HHeJ_G0034768.1 mouse_genomes_project 9 83731851 83824651 + MGP_C3HHeJ_P0093017 Sh3bgrl2 protein_coding protein_coding MGP_C3HHeJ_T0093018.1 MGP_C3HHeJ_G0034768.1 mouse_genomes_project 9 83731960 83781503 + MGP_C3HHeJ_P0093018 Sh3bgrl2 protein_coding protein_coding MGP_C3HHeJ_T0099686.1 MGP_C3HHeJ_G0037880.1 mouse_genomes_project 9 42490640 42490745 - Gm23326 snRNA snRNA MGP_C3HHeJ_T0091122.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24520160 24564311 - MGP_C3HHeJ_P0091122 Glb1l2 protein_coding protein_coding MGP_C3HHeJ_T0091123.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24520161 24564347 - MGP_C3HHeJ_P0091123 Glb1l2 protein_coding protein_coding MGP_C3HHeJ_T0091124.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24520884 24564300 - MGP_C3HHeJ_P0091124 Glb1l2 protein_coding protein_coding MGP_C3HHeJ_T0091125.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24522319 24560464 - MGP_C3HHeJ_P0091125 Glb1l2 protein_coding protein_coding MGP_C3HHeJ_T0091126.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24524613 24525587 - Glb1l2 protein_coding retained_intron MGP_C3HHeJ_T0091127.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24531133 24550100 - Glb1l2 protein_coding retained_intron MGP_C3HHeJ_T0091128.1 MGP_C3HHeJ_G0034181.1 mouse_genomes_project 9 24537797 24564301 - MGP_C3HHeJ_P0091128 Glb1l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090660.1 MGP_C3HHeJ_G0033997.1 mouse_genomes_project 9 2276827 2301264 + MGP_C3HHeJ_P0090660 Casp12 protein_coding protein_coding MGP_C3HHeJ_T0090661.1 MGP_C3HHeJ_G0033997.1 mouse_genomes_project 9 2276873 2301113 + MGP_C3HHeJ_P0090661 Casp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090662.1 MGP_C3HHeJ_G0033997.1 mouse_genomes_project 9 2276876 2287156 + Casp12 protein_coding retained_intron MGP_C3HHeJ_T0090663.1 MGP_C3HHeJ_G0033997.1 mouse_genomes_project 9 2276893 2288159 + Casp12 protein_coding retained_intron MGP_C3HHeJ_T0090664.1 MGP_C3HHeJ_G0033997.1 mouse_genomes_project 9 2276901 2292361 + MGP_C3HHeJ_P0090664 Casp12 protein_coding protein_coding MGP_C3HHeJ_T0093690.1 MGP_C3HHeJ_G0034909.1 mouse_genomes_project 9 107181705 107251060 + MGP_C3HHeJ_P0093690 Poc1a protein_coding protein_coding MGP_C3HHeJ_T0093691.1 MGP_C3HHeJ_G0034909.1 mouse_genomes_project 9 107182024 107251073 + MGP_C3HHeJ_P0093691 Poc1a protein_coding protein_coding MGP_C3HHeJ_T0093692.1 MGP_C3HHeJ_G0034909.1 mouse_genomes_project 9 107191495 107251794 + Poc1a protein_coding processed_transcript MGP_C3HHeJ_T0093693.1 MGP_C3HHeJ_G0034909.1 mouse_genomes_project 9 107201388 107251058 + Poc1a protein_coding processed_transcript MGP_C3HHeJ_T0093694.1 MGP_C3HHeJ_G0034909.1 mouse_genomes_project 9 107228076 107251059 + Poc1a protein_coding processed_transcript MGP_C3HHeJ_T0092353.1 MGP_C3HHeJ_G0034615.1 mouse_genomes_project 9 63094510 63208380 - MGP_C3HHeJ_P0092353 Smad3 protein_coding protein_coding MGP_C3HHeJ_T0092354.1 MGP_C3HHeJ_G0034615.1 mouse_genomes_project 9 63102511 63114283 - MGP_C3HHeJ_P0092354 Smad3 protein_coding protein_coding MGP_C3HHeJ_T0092355.1 MGP_C3HHeJ_G0034615.1 mouse_genomes_project 9 63102539 63161233 - MGP_C3HHeJ_P0092355 Smad3 protein_coding protein_coding MGP_C3HHeJ_T0092356.1 MGP_C3HHeJ_G0034615.1 mouse_genomes_project 9 63113883 63201514 - MGP_C3HHeJ_P0092356 Smad3 protein_coding protein_coding MGP_C3HHeJ_T0092357.1 MGP_C3HHeJ_G0034615.1 mouse_genomes_project 9 63115548 63192189 - Smad3 protein_coding processed_transcript MGP_C3HHeJ_T0015877.1 MGP_C3HHeJ_G0013981.1 mouse_genomes_project 9 78490180 78490747 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099685.1 MGP_C3HHeJ_G0037879.1 mouse_genomes_project 9 39833460 39833566 - Gm25401 snRNA snRNA MGP_C3HHeJ_T0093468.1 MGP_C3HHeJ_G0034868.1 mouse_genomes_project 9 102642952 102647698 + MGP_C3HHeJ_P0093468 9630041A04Rik protein_coding protein_coding MGP_C3HHeJ_T0002372.1 MGP_C3HHeJ_G0002290.1 mouse_genomes_project 9 91615952 91618426 - TEC TEC MGP_C3HHeJ_T0100965.1 MGP_C3HHeJ_G0039159.1 mouse_genomes_project 9 40843751 40843883 - Gm26272 snoRNA snoRNA MGP_C3HHeJ_T0093721.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107361308 107371059 + MGP_C3HHeJ_P0093721 protein_coding protein_coding MGP_C3HHeJ_T0093722.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107361424 107370043 + protein_coding processed_transcript MGP_C3HHeJ_T0093723.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107361479 107375393 + MGP_C3HHeJ_P0093723 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093724.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107363809 107364804 + protein_coding processed_transcript MGP_C3HHeJ_T0093725.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107363884 107370485 + protein_coding retained_intron MGP_C3HHeJ_T0093726.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107363897 107371738 + MGP_C3HHeJ_P0093726 protein_coding protein_coding MGP_C3HHeJ_T0093727.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107365650 107366406 + protein_coding processed_transcript MGP_C3HHeJ_T0093728.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107366063 107371043 + MGP_C3HHeJ_P0093728 protein_coding protein_coding MGP_C3HHeJ_T0093729.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107370362 107370833 + protein_coding retained_intron MGP_C3HHeJ_T0093730.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107370624 107371301 + MGP_C3HHeJ_P0093730 protein_coding protein_coding MGP_C3HHeJ_T0093731.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107371020 107374927 + MGP_C3HHeJ_P0093731 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093732.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107371236 107371975 + protein_coding retained_intron MGP_C3HHeJ_T0093733.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107371261 107372759 + MGP_C3HHeJ_P0093733 protein_coding protein_coding MGP_C3HHeJ_T0093734.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107371556 107372225 + protein_coding processed_transcript MGP_C3HHeJ_T0093735.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107371683 107375073 + MGP_C3HHeJ_P0093735 protein_coding protein_coding MGP_C3HHeJ_T0093736.1 MGP_C3HHeJ_G0034915.1 mouse_genomes_project 9 107371866 107372485 + protein_coding retained_intron MGP_C3HHeJ_T0015955.1 MGP_C3HHeJ_G0014059.1 mouse_genomes_project 9 122116748 122117338 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090867.1 MGP_C3HHeJ_G0034072.1 mouse_genomes_project 9 16608294 16609401 - MGP_C3HHeJ_P0090867 Olfr843 protein_coding protein_coding MGP_C3HHeJ_T0090955.1 MGP_C3HHeJ_G0034112.1 mouse_genomes_project 9 18399458 18403727 - MGP_C3HHeJ_P0090955 Eif3g protein_coding protein_coding MGP_C3HHeJ_T0090876.1 MGP_C3HHeJ_G0034081.1 mouse_genomes_project 9 16927946 16928894 - MGP_C3HHeJ_P0090876 Olfr854 protein_coding protein_coding MGP_C3HHeJ_T0092342.1 MGP_C3HHeJ_G0034612.1 mouse_genomes_project 9 62832956 62837337 - 2300009A05Rik protein_coding processed_transcript MGP_C3HHeJ_T0092343.1 MGP_C3HHeJ_G0034612.1 mouse_genomes_project 9 62832956 62837751 - MGP_C3HHeJ_P0092343 2300009A05Rik protein_coding protein_coding MGP_C3HHeJ_T0092344.1 MGP_C3HHeJ_G0034612.1 mouse_genomes_project 9 62832957 62837337 - 2300009A05Rik protein_coding processed_transcript MGP_C3HHeJ_T0092345.1 MGP_C3HHeJ_G0034612.1 mouse_genomes_project 9 62835986 62837756 - 2300009A05Rik protein_coding retained_intron MGP_C3HHeJ_T0100993.1 MGP_C3HHeJ_G0039187.1 mouse_genomes_project 9 92920691 92920822 - Gm25417 snoRNA snoRNA MGP_C3HHeJ_T0092115.1 MGP_C3HHeJ_G0034549.1 mouse_genomes_project 9 56633714 56635062 + MGP_C3HHeJ_P0092115 Rpp25 protein_coding protein_coding MGP_C3HHeJ_T0097944.1 MGP_C3HHeJ_G0036156.1 mouse_genomes_project 9 16338295 16338564 - pseudogene pseudogene MGP_C3HHeJ_T0005371.1 MGP_C3HHeJ_G0004541.1 mouse_genomes_project 9 50749575 50791264 - Arhgap20os antisense antisense MGP_C3HHeJ_T0005372.1 MGP_C3HHeJ_G0004541.1 mouse_genomes_project 9 50756268 50791151 - Arhgap20os antisense antisense MGP_C3HHeJ_T0005373.1 MGP_C3HHeJ_G0004541.1 mouse_genomes_project 9 50756276 50791263 - Arhgap20os antisense antisense MGP_C3HHeJ_T0005374.1 MGP_C3HHeJ_G0004541.1 mouse_genomes_project 9 50757133 50791136 - Arhgap20os antisense antisense MGP_C3HHeJ_T0094712.1 MGP_C3HHeJ_G0035089.1 mouse_genomes_project 9 120173641 120180798 + MGP_C3HHeJ_P0094712 Eomes protein_coding protein_coding MGP_C3HHeJ_T0094713.1 MGP_C3HHeJ_G0035089.1 mouse_genomes_project 9 120173773 120181565 + MGP_C3HHeJ_P0094713 Eomes protein_coding protein_coding MGP_C3HHeJ_T0094714.1 MGP_C3HHeJ_G0035089.1 mouse_genomes_project 9 120174282 120178190 + MGP_C3HHeJ_P0094714 Eomes protein_coding protein_coding MGP_C3HHeJ_T0091437.1 MGP_C3HHeJ_G0034315.1 mouse_genomes_project 9 37826918 37828211 + MGP_C3HHeJ_P0091437 protein_coding protein_coding MGP_C3HHeJ_T0094879.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995109 124016133 + MGP_C3HHeJ_P0094879 Snrk protein_coding protein_coding MGP_C3HHeJ_T0094880.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995136 124016241 + MGP_C3HHeJ_P0094880 Snrk protein_coding protein_coding MGP_C3HHeJ_T0094881.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995165 124050345 + MGP_C3HHeJ_P0094881 Snrk protein_coding protein_coding MGP_C3HHeJ_T0094882.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995173 124045765 + MGP_C3HHeJ_P0094882 Snrk protein_coding protein_coding MGP_C3HHeJ_T0094883.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995185 124016088 + MGP_C3HHeJ_P0094883 Snrk protein_coding protein_coding MGP_C3HHeJ_T0094884.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995201 124048710 + MGP_C3HHeJ_P0094884 Snrk protein_coding protein_coding MGP_C3HHeJ_T0094885.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 123995578 124015933 + Snrk protein_coding processed_transcript MGP_C3HHeJ_T0094886.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 124039910 124045767 + Snrk protein_coding retained_intron MGP_C3HHeJ_T0094887.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 124043244 124045866 + Snrk protein_coding retained_intron MGP_C3HHeJ_T0094888.1 MGP_C3HHeJ_G0035142.1 mouse_genomes_project 9 124046119 124048142 + Snrk protein_coding processed_transcript MGP_C3HHeJ_T0009165.1 MGP_C3HHeJ_G0007360.1 mouse_genomes_project 9 60007036 60009715 + B930082K07Rik lincRNA lincRNA MGP_C3HHeJ_T0092442.1 MGP_C3HHeJ_G0034643.1 mouse_genomes_project 9 65018892 65046336 + MGP_C3HHeJ_P0092442 Spg21 protein_coding protein_coding MGP_C3HHeJ_T0093752.1 MGP_C3HHeJ_G0034919.1 mouse_genomes_project 9 107404849 107407131 + MGP_C3HHeJ_P0093752 Iqcf1 protein_coding protein_coding MGP_C3HHeJ_T0093753.1 MGP_C3HHeJ_G0034919.1 mouse_genomes_project 9 107404874 107407136 + MGP_C3HHeJ_P0093753 Iqcf1 protein_coding protein_coding MGP_C3HHeJ_T0015936.1 MGP_C3HHeJ_G0014040.1 mouse_genomes_project 9 103264537 103264738 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009145.1 MGP_C3HHeJ_G0007343.1 mouse_genomes_project 9 39696724 39715766 + lincRNA lincRNA MGP_C3HHeJ_T0094444.1 MGP_C3HHeJ_G0035027.1 mouse_genomes_project 9 111484330 111502224 + MGP_C3HHeJ_P0094444 Cspg5 protein_coding protein_coding MGP_C3HHeJ_T0094445.1 MGP_C3HHeJ_G0035027.1 mouse_genomes_project 9 111484330 111502225 + MGP_C3HHeJ_P0094445 Cspg5 protein_coding protein_coding MGP_C3HHeJ_T0094446.1 MGP_C3HHeJ_G0035027.1 mouse_genomes_project 9 111486031 111488154 + Cspg5 protein_coding retained_intron MGP_C3HHeJ_T0094447.1 MGP_C3HHeJ_G0035027.1 mouse_genomes_project 9 111486079 111502212 + MGP_C3HHeJ_P0094447 Cspg5 protein_coding protein_coding MGP_C3HHeJ_T0094448.1 MGP_C3HHeJ_G0035027.1 mouse_genomes_project 9 111486613 111502224 + MGP_C3HHeJ_P0094448 Cspg5 protein_coding protein_coding MGP_C3HHeJ_T0093021.1 MGP_C3HHeJ_G0034770.1 mouse_genomes_project 9 84037506 84072664 + Ttk protein_coding retained_intron MGP_C3HHeJ_T0093022.1 MGP_C3HHeJ_G0034770.1 mouse_genomes_project 9 84037507 84075560 + MGP_C3HHeJ_P0093022 Ttk protein_coding protein_coding MGP_C3HHeJ_T0093023.1 MGP_C3HHeJ_G0034770.1 mouse_genomes_project 9 84037534 84075557 + MGP_C3HHeJ_P0093023 Ttk protein_coding protein_coding MGP_C3HHeJ_T0093024.1 MGP_C3HHeJ_G0034770.1 mouse_genomes_project 9 84037550 84040315 + Ttk protein_coding retained_intron MGP_C3HHeJ_T0093025.1 MGP_C3HHeJ_G0034770.1 mouse_genomes_project 9 84037557 84047169 + Ttk protein_coding processed_transcript MGP_C3HHeJ_T0093026.1 MGP_C3HHeJ_G0034770.1 mouse_genomes_project 9 84037582 84045834 + MGP_C3HHeJ_P0093026 Ttk protein_coding protein_coding MGP_C3HHeJ_T0093316.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97325074 97393319 - MGP_C3HHeJ_P0093316 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093317.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97325082 97393335 - MGP_C3HHeJ_P0093317 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093318.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97325082 97393380 - MGP_C3HHeJ_P0093318 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093319.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97325324 97393339 - MGP_C3HHeJ_P0093319 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093320.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97327154 97393334 - MGP_C3HHeJ_P0093320 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093321.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97327325 97366872 - MGP_C3HHeJ_P0093321 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093322.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97342016 97358901 - Pxylp1 protein_coding processed_transcript MGP_C3HHeJ_T0093323.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97342126 97396575 - MGP_C3HHeJ_P0093323 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093324.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97342815 97393326 - Pxylp1 protein_coding retained_intron MGP_C3HHeJ_T0093325.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97342932 97366949 - MGP_C3HHeJ_P0093325 Pxylp1 protein_coding protein_coding MGP_C3HHeJ_T0093326.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97360446 97366951 - Pxylp1 protein_coding processed_transcript MGP_C3HHeJ_T0093327.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97364771 97395996 - Pxylp1 protein_coding processed_transcript MGP_C3HHeJ_T0093328.1 MGP_C3HHeJ_G0034831.1 mouse_genomes_project 9 97391536 97393339 - Pxylp1 protein_coding retained_intron MGP_C3HHeJ_T0002435.1 MGP_C3HHeJ_G0002353.1 mouse_genomes_project 9 112721191 112722671 + TEC TEC MGP_C3HHeJ_T0098555.1 MGP_C3HHeJ_G0036755.1 mouse_genomes_project 9 26003129 26004487 + Gm15606 sense_intronic sense_intronic MGP_C3HHeJ_T0098556.1 MGP_C3HHeJ_G0036755.1 mouse_genomes_project 9 26003182 26004764 + Gm15606 sense_intronic sense_intronic MGP_C3HHeJ_T0009223.1 MGP_C3HHeJ_G0007403.1 mouse_genomes_project 9 97010945 97017755 - lincRNA lincRNA MGP_C3HHeJ_T0090926.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18136961 18140859 + Ubl5 protein_coding retained_intron MGP_C3HHeJ_T0090927.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18137401 18141048 + MGP_C3HHeJ_P0090927 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090928.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138154 18140861 + MGP_C3HHeJ_P0090928 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090929.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138423 18139733 + MGP_C3HHeJ_P0090929 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090930.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138904 18140859 + MGP_C3HHeJ_P0090930 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090931.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138917 18139990 + Ubl5 protein_coding retained_intron MGP_C3HHeJ_T0090932.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138917 18141224 + MGP_C3HHeJ_P0090932 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090933.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138918 18140859 + MGP_C3HHeJ_P0090933 Ubl5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090934.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18138951 18140853 + MGP_C3HHeJ_P0090934 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090935.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18139124 18140859 + MGP_C3HHeJ_P0090935 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0090936.1 MGP_C3HHeJ_G0034104.1 mouse_genomes_project 9 18139301 18140860 + MGP_C3HHeJ_P0090936 Ubl5 protein_coding protein_coding MGP_C3HHeJ_T0091816.1 MGP_C3HHeJ_G0034453.1 mouse_genomes_project 9 48089788 48099997 + MGP_C3HHeJ_P0091816 Gm4894 protein_coding protein_coding MGP_C3HHeJ_T0098204.1 MGP_C3HHeJ_G0036416.1 mouse_genomes_project 9 61900324 61900433 + n-R5s84 rRNA rRNA MGP_C3HHeJ_T0005443.1 MGP_C3HHeJ_G0004586.1 mouse_genomes_project 9 100320473 100365974 + Gm16004 antisense antisense MGP_C3HHeJ_T0094686.1 MGP_C3HHeJ_G0035084.1 mouse_genomes_project 9 117708570 117801667 - MGP_C3HHeJ_P0094686 Tgfbr2 protein_coding protein_coding MGP_C3HHeJ_T0094687.1 MGP_C3HHeJ_G0035084.1 mouse_genomes_project 9 117708570 117801667 - MGP_C3HHeJ_P0094687 Tgfbr2 protein_coding protein_coding MGP_C3HHeJ_T0010994.1 MGP_C3HHeJ_G0009127.1 mouse_genomes_project 9 72323448 72323563 - Gm28010 miRNA miRNA MGP_C3HHeJ_T0005352.1 MGP_C3HHeJ_G0004526.1 mouse_genomes_project 9 26884948 26895349 + Gm15520 antisense antisense MGP_C3HHeJ_T0091059.1 MGP_C3HHeJ_G0034155.1 mouse_genomes_project 9 19589121 19629653 - MGP_C3HHeJ_P0091059 Elavl3 protein_coding protein_coding MGP_C3HHeJ_T0091060.1 MGP_C3HHeJ_G0034155.1 mouse_genomes_project 9 19599568 19612592 - MGP_C3HHeJ_P0091060 Elavl3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091514.1 MGP_C3HHeJ_G0034357.1 mouse_genomes_project 9 40485171 40645280 - MGP_C3HHeJ_P0091514 Sorl1 protein_coding protein_coding MGP_C3HHeJ_T0091515.1 MGP_C3HHeJ_G0034357.1 mouse_genomes_project 9 40490184 40493257 - Sorl1 protein_coding retained_intron MGP_C3HHeJ_T0091516.1 MGP_C3HHeJ_G0034357.1 mouse_genomes_project 9 40496257 40503256 - Sorl1 protein_coding retained_intron MGP_C3HHeJ_T0091517.1 MGP_C3HHeJ_G0034357.1 mouse_genomes_project 9 40503193 40504523 - Sorl1 protein_coding processed_transcript MGP_C3HHeJ_T0094124.1 MGP_C3HHeJ_G0034978.1 mouse_genomes_project 9 109352889 109371877 + MGP_C3HHeJ_P0094124 1700102P08Rik protein_coding protein_coding MGP_C3HHeJ_T0094125.1 MGP_C3HHeJ_G0034978.1 mouse_genomes_project 9 109352918 109357853 + MGP_C3HHeJ_P0094125 1700102P08Rik protein_coding protein_coding MGP_C3HHeJ_T0010969.1 MGP_C3HHeJ_G0009102.1 mouse_genomes_project 9 41404554 41404633 - Gm27509 miRNA miRNA MGP_C3HHeJ_T0091892.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49737648 49756961 + Ppp2r1b protein_coding processed_transcript MGP_C3HHeJ_T0091893.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750542 49789365 + MGP_C3HHeJ_P0091893 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091894.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750542 49787933 + MGP_C3HHeJ_P0091894 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091895.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750555 49776571 + MGP_C3HHeJ_P0091895 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091896.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750575 49775227 + MGP_C3HHeJ_P0091896 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091897.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750581 49787940 + MGP_C3HHeJ_P0091897 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091898.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750582 49787933 + MGP_C3HHeJ_P0091898 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091899.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750584 49775074 + MGP_C3HHeJ_P0091899 Ppp2r1b protein_coding protein_coding MGP_C3HHeJ_T0091900.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49750597 49775547 + MGP_C3HHeJ_P0091900 Ppp2r1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091901.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49765200 49775169 + MGP_C3HHeJ_P0091901 Ppp2r1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091902.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49768143 49773202 + Ppp2r1b protein_coding processed_transcript MGP_C3HHeJ_T0091903.1 MGP_C3HHeJ_G0034476.1 mouse_genomes_project 9 49773224 49774276 + Ppp2r1b protein_coding retained_intron MGP_C3HHeJ_T0011010.1 MGP_C3HHeJ_G0009143.1 mouse_genomes_project 9 109555451 109555536 + Mir425 miRNA miRNA MGP_C3HHeJ_T0093872.1 MGP_C3HHeJ_G0034943.1 mouse_genomes_project 9 108505235 108510010 + MGP_C3HHeJ_P0093872 Hyal1 protein_coding protein_coding MGP_C3HHeJ_T0093873.1 MGP_C3HHeJ_G0034943.1 mouse_genomes_project 9 108505246 108507867 + MGP_C3HHeJ_P0093873 Hyal1 protein_coding protein_coding MGP_C3HHeJ_T0093874.1 MGP_C3HHeJ_G0034943.1 mouse_genomes_project 9 108505266 108509287 + MGP_C3HHeJ_P0093874 Hyal1 protein_coding protein_coding MGP_C3HHeJ_T0093875.1 MGP_C3HHeJ_G0034943.1 mouse_genomes_project 9 108505298 108507723 + MGP_C3HHeJ_P0093875 Hyal1 protein_coding protein_coding MGP_C3HHeJ_T0093882.1 MGP_C3HHeJ_G0034943.1 mouse_genomes_project 9 108507901 108509980 + Hyal1 protein_coding retained_intron MGP_C3HHeJ_T0009265.1 MGP_C3HHeJ_G0007436.1 mouse_genomes_project 9 121196386 121201004 - 4930516B21Rik lincRNA lincRNA MGP_C3HHeJ_T0002392.1 MGP_C3HHeJ_G0002310.1 mouse_genomes_project 9 101555228 101558256 + TEC TEC MGP_C3HHeJ_T0010987.1 MGP_C3HHeJ_G0009120.1 mouse_genomes_project 9 66886532 66886599 - Mir190a miRNA miRNA MGP_C3HHeJ_T0009196.1 MGP_C3HHeJ_G0007385.1 mouse_genomes_project 9 82435940 82439117 + 1700063H06Rik lincRNA lincRNA MGP_C3HHeJ_T0091365.1 MGP_C3HHeJ_G0034254.1 mouse_genomes_project 9 35892430 35901218 - Tbrg1 protein_coding retained_intron MGP_C3HHeJ_T0091366.1 MGP_C3HHeJ_G0034254.1 mouse_genomes_project 9 35892430 35901317 - MGP_C3HHeJ_P0091366 Tbrg1 protein_coding protein_coding MGP_C3HHeJ_T0091367.1 MGP_C3HHeJ_G0034254.1 mouse_genomes_project 9 35895164 35901163 - Tbrg1 protein_coding retained_intron MGP_C3HHeJ_T0091368.1 MGP_C3HHeJ_G0034254.1 mouse_genomes_project 9 35897887 35901173 - Tbrg1 protein_coding retained_intron MGP_C3HHeJ_T0093715.1 MGP_C3HHeJ_G0034914.1 mouse_genomes_project 9 107355824 107359613 + MGP_C3HHeJ_P0093715 Abhd14b protein_coding protein_coding MGP_C3HHeJ_T0093716.1 MGP_C3HHeJ_G0034914.1 mouse_genomes_project 9 107355828 107359638 + MGP_C3HHeJ_P0093716 Abhd14b protein_coding protein_coding MGP_C3HHeJ_T0093717.1 MGP_C3HHeJ_G0034914.1 mouse_genomes_project 9 107356241 107360134 + MGP_C3HHeJ_P0093717 Abhd14b protein_coding protein_coding MGP_C3HHeJ_T0093718.1 MGP_C3HHeJ_G0034914.1 mouse_genomes_project 9 107356654 107360944 + MGP_C3HHeJ_P0093718 Abhd14b protein_coding protein_coding MGP_C3HHeJ_T0093719.1 MGP_C3HHeJ_G0034914.1 mouse_genomes_project 9 107356689 107360102 + MGP_C3HHeJ_P0093719 Abhd14b protein_coding protein_coding MGP_C3HHeJ_T0093720.1 MGP_C3HHeJ_G0034914.1 mouse_genomes_project 9 107356728 107360074 + MGP_C3HHeJ_P0093720 Abhd14b protein_coding protein_coding MGP_C3HHeJ_T0092219.1 MGP_C3HHeJ_G0034579.1 mouse_genomes_project 9 58091692 58270847 - MGP_C3HHeJ_P0092219 Neo1 protein_coding protein_coding MGP_C3HHeJ_T0092220.1 MGP_C3HHeJ_G0034579.1 mouse_genomes_project 9 58091734 58270568 - MGP_C3HHeJ_P0092220 Neo1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0011004.1 MGP_C3HHeJ_G0009137.1 mouse_genomes_project 9 107071741 107071829 + Mirlet7g miRNA miRNA MGP_C3HHeJ_T0005363.1 MGP_C3HHeJ_G0004536.1 mouse_genomes_project 9 43981357 43985142 - 1700003G13Rik antisense antisense MGP_C3HHeJ_T0005364.1 MGP_C3HHeJ_G0004536.1 mouse_genomes_project 9 43981358 43985163 - 1700003G13Rik antisense antisense MGP_C3HHeJ_T0091067.1 MGP_C3HHeJ_G0034158.1 mouse_genomes_project 9 19684330 19694586 + MGP_C3HHeJ_P0091067 Cnn1 protein_coding protein_coding MGP_C3HHeJ_T0002354.1 MGP_C3HHeJ_G0002273.1 mouse_genomes_project 9 82202577 82203181 + TEC TEC MGP_C3HHeJ_T0015929.1 MGP_C3HHeJ_G0014033.1 mouse_genomes_project 9 101290473 101291465 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098202.1 MGP_C3HHeJ_G0036414.1 mouse_genomes_project 9 35238884 35238993 + n-R5s82 rRNA rRNA MGP_C3HHeJ_T0092074.1 MGP_C3HHeJ_G0034540.1 mouse_genomes_project 9 56074754 56147690 + MGP_C3HHeJ_P0092074 Ptpn9 protein_coding protein_coding MGP_C3HHeJ_T0094301.1 MGP_C3HHeJ_G0035002.1 mouse_genomes_project 9 109943894 109945049 + MGP_C3HHeJ_P0094301 Ucn2 protein_coding protein_coding MGP_C3HHeJ_T0091765.1 MGP_C3HHeJ_G0034435.1 mouse_genomes_project 9 44982863 44994195 + MGP_C3HHeJ_P0091765 Zpr1 protein_coding protein_coding MGP_C3HHeJ_T0091766.1 MGP_C3HHeJ_G0034435.1 mouse_genomes_project 9 44982863 44993878 + MGP_C3HHeJ_P0091766 Zpr1 protein_coding protein_coding MGP_C3HHeJ_T0091767.1 MGP_C3HHeJ_G0034435.1 mouse_genomes_project 9 44982955 44985456 + MGP_C3HHeJ_P0091767 Zpr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091768.1 MGP_C3HHeJ_G0034435.1 mouse_genomes_project 9 44983298 44986404 + Zpr1 protein_coding retained_intron MGP_C3HHeJ_T0091769.1 MGP_C3HHeJ_G0034435.1 mouse_genomes_project 9 44985123 44986276 + Zpr1 protein_coding retained_intron MGP_C3HHeJ_T0091770.1 MGP_C3HHeJ_G0034435.1 mouse_genomes_project 9 44985800 44987323 + Zpr1 protein_coding retained_intron MGP_C3HHeJ_T0005441.1 MGP_C3HHeJ_G0004584.1 mouse_genomes_project 9 99134953 99136209 + Gm37637 antisense antisense MGP_C3HHeJ_T0002399.1 MGP_C3HHeJ_G0002317.1 mouse_genomes_project 9 102609900 102616863 - TEC TEC MGP_C3HHeJ_T0091968.1 MGP_C3HHeJ_G0034505.1 mouse_genomes_project 9 53263390 53314233 + MGP_C3HHeJ_P0091968 Gldn protein_coding protein_coding MGP_C3HHeJ_T0002339.1 MGP_C3HHeJ_G0002258.1 mouse_genomes_project 9 72510316 72513818 + TEC TEC MGP_C3HHeJ_T0005442.1 MGP_C3HHeJ_G0004585.1 mouse_genomes_project 9 99868354 99873858 - 4930422M22Rik antisense antisense MGP_C3HHeJ_T0015837.1 MGP_C3HHeJ_G0013941.1 mouse_genomes_project 9 47856505 47857198 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015898.1 MGP_C3HHeJ_G0014002.1 mouse_genomes_project 9 90045482 90045945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093118.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88699445 88737065 - MGP_C3HHeJ_P0093118 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093119.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88704873 88733225 - MGP_C3HHeJ_P0093119 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093120.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88705075 88734597 - MGP_C3HHeJ_P0093120 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093121.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88705124 88734673 - MGP_C3HHeJ_P0093121 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093122.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88706373 88734615 - MGP_C3HHeJ_P0093122 Syncrip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093123.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88708595 88733213 - MGP_C3HHeJ_P0093123 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093124.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88708595 88734561 - MGP_C3HHeJ_P0093124 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093125.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88717025 88733204 - Syncrip protein_coding retained_intron MGP_C3HHeJ_T0093126.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88729314 88733629 - MGP_C3HHeJ_P0093126 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0093127.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88731184 88733684 - Syncrip protein_coding retained_intron MGP_C3HHeJ_T0093128.1 MGP_C3HHeJ_G0034790.1 mouse_genomes_project 9 88732121 88737080 - MGP_C3HHeJ_P0093128 Syncrip protein_coding protein_coding MGP_C3HHeJ_T0018317.1 MGP_C3HHeJ_G0015504.1 mouse_genomes_project 9 72871803 72874857 + 2310009A05Rik processed_transcript antisense MGP_C3HHeJ_T0018318.1 MGP_C3HHeJ_G0015504.1 mouse_genomes_project 9 72871815 72874454 + 2310009A05Rik processed_transcript retained_intron MGP_C3HHeJ_T0011014.1 MGP_C3HHeJ_G0009147.1 mouse_genomes_project 9 111528734 111528857 + Mir6236 miRNA miRNA MGP_C3HHeJ_T0091027.1 MGP_C3HHeJ_G0034138.1 mouse_genomes_project 9 19139947 19144070 - MGP_C3HHeJ_P0091027 Yipf2 protein_coding protein_coding MGP_C3HHeJ_T0091028.1 MGP_C3HHeJ_G0034138.1 mouse_genomes_project 9 19139947 19144070 - MGP_C3HHeJ_P0091028 Yipf2 protein_coding protein_coding MGP_C3HHeJ_T0091029.1 MGP_C3HHeJ_G0034138.1 mouse_genomes_project 9 19139947 19144070 - MGP_C3HHeJ_P0091029 Yipf2 protein_coding protein_coding MGP_C3HHeJ_T0005409.1 MGP_C3HHeJ_G0004566.1 mouse_genomes_project 9 79806429 79808561 + 4930562D21Rik antisense antisense MGP_C3HHeJ_T0009200.1 MGP_C3HHeJ_G0007387.1 mouse_genomes_project 9 83886649 83888391 + Gm2109 lincRNA lincRNA MGP_C3HHeJ_T0093776.1 MGP_C3HHeJ_G0034926.1 mouse_genomes_project 9 107597979 107703718 - MGP_C3HHeJ_P0093776 Rad54l2 protein_coding protein_coding MGP_C3HHeJ_T0093777.1 MGP_C3HHeJ_G0034926.1 mouse_genomes_project 9 107598686 107603188 - MGP_C3HHeJ_P0093777 Rad54l2 protein_coding protein_coding MGP_C3HHeJ_T0093778.1 MGP_C3HHeJ_G0034926.1 mouse_genomes_project 9 107633776 107634714 - MGP_C3HHeJ_P0093778 Rad54l2 protein_coding protein_coding MGP_C3HHeJ_T0093779.1 MGP_C3HHeJ_G0034926.1 mouse_genomes_project 9 107701286 107703700 - Rad54l2 protein_coding retained_intron MGP_C3HHeJ_T0094677.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116518315 116782937 + MGP_C3HHeJ_P0094677 Osbpl10 protein_coding protein_coding MGP_C3HHeJ_T0094678.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116538817 116715116 + MGP_C3HHeJ_P0094678 Osbpl10 protein_coding protein_coding MGP_C3HHeJ_T0094679.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116567076 116781887 + MGP_C3HHeJ_P0094679 Osbpl10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094680.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116605956 116620055 + MGP_C3HHeJ_P0094680 Osbpl10 protein_coding protein_coding MGP_C3HHeJ_T0094681.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116620021 116781891 + MGP_C3HHeJ_P0094681 Osbpl10 protein_coding protein_coding MGP_C3HHeJ_T0094682.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116634902 116767891 + Osbpl10 protein_coding processed_transcript MGP_C3HHeJ_T0094683.1 MGP_C3HHeJ_G0035081.1 mouse_genomes_project 9 116668219 116766303 + Osbpl10 protein_coding processed_transcript MGP_C3HHeJ_T0091231.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33214910 33221678 - MGP_C3HHeJ_P0091231 Foxred1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091232.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33214912 33221696 - Foxred1 protein_coding retained_intron MGP_C3HHeJ_T0091233.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33214912 33221712 - Foxred1 protein_coding retained_intron MGP_C3HHeJ_T0091234.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33214912 33221797 - MGP_C3HHeJ_P0091234 Foxred1 protein_coding protein_coding MGP_C3HHeJ_T0091235.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33214912 33221743 - MGP_C3HHeJ_P0091235 Foxred1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091236.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33214912 33221722 - MGP_C3HHeJ_P0091236 Foxred1 protein_coding protein_coding MGP_C3HHeJ_T0091237.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33215569 33216626 - Foxred1 protein_coding retained_intron MGP_C3HHeJ_T0091238.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33215888 33216938 - MGP_C3HHeJ_P0091238 Foxred1 protein_coding protein_coding MGP_C3HHeJ_T0091239.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33216790 33221688 - Foxred1 protein_coding retained_intron MGP_C3HHeJ_T0091240.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33216926 33221738 - MGP_C3HHeJ_P0091240 Foxred1 protein_coding protein_coding MGP_C3HHeJ_T0091241.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33218241 33221664 - MGP_C3HHeJ_P0091241 Foxred1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091242.1 MGP_C3HHeJ_G0034213.1 mouse_genomes_project 9 33218251 33221639 - MGP_C3HHeJ_P0091242 Foxred1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100975.1 MGP_C3HHeJ_G0039169.1 mouse_genomes_project 9 63655005 63655104 + Gm23136 snoRNA snoRNA MGP_C3HHeJ_T0094969.1 MGP_C3HHeJ_G0035174.1 mouse_genomes_project 9 126055977 126061509 + MGP_C3HHeJ_P0094969 Ccr5 protein_coding protein_coding MGP_C3HHeJ_T0094970.1 MGP_C3HHeJ_G0035174.1 mouse_genomes_project 9 126056007 126059594 + Ccr5 protein_coding processed_transcript MGP_C3HHeJ_T0094971.1 MGP_C3HHeJ_G0035174.1 mouse_genomes_project 9 126056007 126066228 + MGP_C3HHeJ_P0094971 Ccr5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094972.1 MGP_C3HHeJ_G0035174.1 mouse_genomes_project 9 126056015 126059058 + MGP_C3HHeJ_P0094972 Ccr5 protein_coding protein_coding MGP_C3HHeJ_T0094973.1 MGP_C3HHeJ_G0035174.1 mouse_genomes_project 9 126061010 126064577 + Ccr5 protein_coding processed_transcript MGP_C3HHeJ_T0002325.1 MGP_C3HHeJ_G0002244.1 mouse_genomes_project 9 71644961 71648171 - TEC TEC MGP_C3HHeJ_T0093780.1 MGP_C3HHeJ_G0034927.1 mouse_genomes_project 9 107742752 107800870 + MGP_C3HHeJ_P0093780 Vprbp protein_coding protein_coding MGP_C3HHeJ_T0093781.1 MGP_C3HHeJ_G0034927.1 mouse_genomes_project 9 107750006 107801814 + MGP_C3HHeJ_P0093781 Vprbp protein_coding protein_coding MGP_C3HHeJ_T0093783.1 MGP_C3HHeJ_G0034927.1 mouse_genomes_project 9 107772785 107774984 + Vprbp protein_coding retained_intron MGP_C3HHeJ_T0093785.1 MGP_C3HHeJ_G0034927.1 mouse_genomes_project 9 107795160 107801036 + MGP_C3HHeJ_P0093785 Vprbp protein_coding protein_coding MGP_C3HHeJ_T0094806.1 MGP_C3HHeJ_G0035122.1 mouse_genomes_project 9 122385275 122388413 + MGP_C3HHeJ_P0094806 Rpl14 protein_coding protein_coding MGP_C3HHeJ_T0092511.1 MGP_C3HHeJ_G0034658.1 mouse_genomes_project 9 66121753 66127889 - MGP_C3HHeJ_P0092511 Fbxl22 protein_coding protein_coding MGP_C3HHeJ_T0092443.1 MGP_C3HHeJ_G0034644.1 mouse_genomes_project 9 65060539 65076070 - MGP_C3HHeJ_P0092443 Ankdd1a protein_coding protein_coding MGP_C3HHeJ_T0092444.1 MGP_C3HHeJ_G0034644.1 mouse_genomes_project 9 65060539 65079244 - MGP_C3HHeJ_P0092444 Ankdd1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0091264.1 MGP_C3HHeJ_G0034217.1 mouse_genomes_project 9 33550470 33572359 - MGP_C3HHeJ_P0091264 Ddx25 protein_coding protein_coding MGP_C3HHeJ_T0010972.1 MGP_C3HHeJ_G0009105.1 mouse_genomes_project 9 43930285 43930350 - Mir7086 miRNA miRNA MGP_C3HHeJ_T0093092.1 MGP_C3HHeJ_G0034783.1 mouse_genomes_project 9 87286611 87344718 + MGP_C3HHeJ_P0093092 Cyb5r4 protein_coding protein_coding MGP_C3HHeJ_T0093093.1 MGP_C3HHeJ_G0034783.1 mouse_genomes_project 9 87286684 87332954 + Cyb5r4 protein_coding processed_transcript MGP_C3HHeJ_T0093094.1 MGP_C3HHeJ_G0034783.1 mouse_genomes_project 9 87294092 87312792 + Cyb5r4 protein_coding retained_intron MGP_C3HHeJ_T0093095.1 MGP_C3HHeJ_G0034783.1 mouse_genomes_project 9 87323981 87344324 + MGP_C3HHeJ_P0093095 Cyb5r4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009213.1 MGP_C3HHeJ_G0007398.1 mouse_genomes_project 9 93107309 93139754 + lincRNA lincRNA MGP_C3HHeJ_T0009214.1 MGP_C3HHeJ_G0007398.1 mouse_genomes_project 9 93108569 93185348 + lincRNA lincRNA MGP_C3HHeJ_T0015934.1 MGP_C3HHeJ_G0014038.1 mouse_genomes_project 9 102133030 102133885 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094593.1 MGP_C3HHeJ_G0035056.1 mouse_genomes_project 9 112575707 112582866 + MGP_C3HHeJ_P0094593 Epm2aip1 protein_coding protein_coding MGP_C3HHeJ_T0094594.1 MGP_C3HHeJ_G0035056.1 mouse_genomes_project 9 112575723 112582870 + MGP_C3HHeJ_P0094594 Epm2aip1 protein_coding protein_coding MGP_C3HHeJ_T0094595.1 MGP_C3HHeJ_G0035056.1 mouse_genomes_project 9 112577880 112581319 + Epm2aip1 protein_coding processed_transcript MGP_C3HHeJ_T0094786.1 MGP_C3HHeJ_G0035115.1 mouse_genomes_project 9 121878212 121880992 + MGP_C3HHeJ_P0094786 Ccr8 protein_coding protein_coding MGP_C3HHeJ_T0009192.1 MGP_C3HHeJ_G0007381.1 mouse_genomes_project 9 79341038 79341477 + Gm28620 lincRNA lincRNA MGP_C3HHeJ_T0011639.1 MGP_C3HHeJ_G0009772.1 mouse_genomes_project 9 18308669 18308990 + Gm26274 misc_RNA misc_RNA MGP_C3HHeJ_T0100967.1 MGP_C3HHeJ_G0039161.1 mouse_genomes_project 9 43368429 43368564 - Gm24166 snoRNA snoRNA MGP_C3HHeJ_T0010983.1 MGP_C3HHeJ_G0009116.1 mouse_genomes_project 9 61621101 61621206 - Gm25603 miRNA miRNA MGP_C3HHeJ_T0093256.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339136 96349849 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093257.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339136 96435174 + MGP_C3HHeJ_P0093257 Atr protein_coding protein_coding MGP_C3HHeJ_T0093258.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339178 96385179 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093259.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339189 96345078 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093260.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339194 96343295 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093261.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339208 96351441 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093262.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96339264 96435154 + MGP_C3HHeJ_P0093262 Atr protein_coding unknown_likely_coding MGP_C3HHeJ_T0093263.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96370004 96372332 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093264.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96385657 96388150 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093265.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96396771 96400929 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093266.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96417363 96419138 + Atr protein_coding retained_intron MGP_C3HHeJ_T0093267.1 MGP_C3HHeJ_G0034823.1 mouse_genomes_project 9 96420648 96424375 + Atr protein_coding retained_intron MGP_C3HHeJ_T0015860.1 MGP_C3HHeJ_G0013964.1 mouse_genomes_project 9 72653137 72653444 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091842.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49499864 49506775 + MGP_C3HHeJ_P0091842 Pih1d2 protein_coding protein_coding MGP_C3HHeJ_T0091843.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49499876 49505073 + Pih1d2 protein_coding retained_intron MGP_C3HHeJ_T0091844.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49499880 49504322 + MGP_C3HHeJ_P0091844 Pih1d2 protein_coding protein_coding MGP_C3HHeJ_T0091845.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49499926 49506778 + MGP_C3HHeJ_P0091845 Pih1d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091846.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49500064 49501361 + Pih1d2 protein_coding retained_intron MGP_C3HHeJ_T0091847.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49500093 49503734 + MGP_C3HHeJ_P0091847 Pih1d2 protein_coding protein_coding MGP_C3HHeJ_T0091848.1 MGP_C3HHeJ_G0034467.1 mouse_genomes_project 9 49500550 49503609 + MGP_C3HHeJ_P0091848 Pih1d2 protein_coding protein_coding MGP_C3HHeJ_T0090722.1 MGP_C3HHeJ_G0034018.1 mouse_genomes_project 9 5603869 5730011 + MGP_C3HHeJ_P0090722 Trpc6 protein_coding protein_coding MGP_C3HHeJ_T0009248.1 MGP_C3HHeJ_G0007425.1 mouse_genomes_project 9 109949102 109949459 - Gm38004 lincRNA lincRNA MGP_C3HHeJ_T0005461.1 MGP_C3HHeJ_G0004600.1 mouse_genomes_project 9 108368421 108369514 - Gm17118 antisense antisense MGP_C3HHeJ_T0092529.1 MGP_C3HHeJ_G0034661.1 mouse_genomes_project 9 66399651 66424028 - MGP_C3HHeJ_P0092529 Aph1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094368.1 MGP_C3HHeJ_G0035019.1 mouse_genomes_project 9 110736649 110759221 - MGP_C3HHeJ_P0094368 Fbxw25 protein_coding protein_coding MGP_C3HHeJ_T0002404.1 MGP_C3HHeJ_G0002322.1 mouse_genomes_project 9 103412365 103415188 - TEC TEC MGP_C3HHeJ_T0091364.1 MGP_C3HHeJ_G0034253.1 mouse_genomes_project 9 35852289 35891566 + MGP_C3HHeJ_P0091364 Siae protein_coding protein_coding MGP_C3HHeJ_T0099728.1 MGP_C3HHeJ_G0037922.1 mouse_genomes_project 9 104275683 104275786 - Gm26360 snRNA snRNA MGP_C3HHeJ_T0002408.1 MGP_C3HHeJ_G0002326.1 mouse_genomes_project 9 104290122 104292264 - TEC TEC MGP_C3HHeJ_T0093516.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103933318 103960010 - MGP_C3HHeJ_P0093516 Trf protein_coding protein_coding MGP_C3HHeJ_T0093517.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103938106 103960181 - MGP_C3HHeJ_P0093517 Trf protein_coding protein_coding MGP_C3HHeJ_T0093518.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103938336 103941287 - Trf protein_coding retained_intron MGP_C3HHeJ_T0093519.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103939850 103949184 - MGP_C3HHeJ_P0093519 Trf protein_coding protein_coding MGP_C3HHeJ_T0093520.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103939918 103951389 - MGP_C3HHeJ_P0093520 Trf protein_coding protein_coding MGP_C3HHeJ_T0093521.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103945115 103960007 - MGP_C3HHeJ_P0093521 Trf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093522.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103950212 103952003 - Trf protein_coding retained_intron MGP_C3HHeJ_T0093523.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103951422 103960003 - MGP_C3HHeJ_P0093523 Trf protein_coding protein_coding MGP_C3HHeJ_T0093524.1 MGP_C3HHeJ_G0034879.1 mouse_genomes_project 9 103952412 103958232 - MGP_C3HHeJ_P0093524 Trf protein_coding protein_coding MGP_C3HHeJ_T0093546.1 MGP_C3HHeJ_G0034884.1 mouse_genomes_project 9 104229178 104441571 - MGP_C3HHeJ_P0093546 Tmem108 protein_coding protein_coding MGP_C3HHeJ_T0093547.1 MGP_C3HHeJ_G0034884.1 mouse_genomes_project 9 104230009 104512320 - MGP_C3HHeJ_P0093547 Tmem108 protein_coding protein_coding MGP_C3HHeJ_T0093548.1 MGP_C3HHeJ_G0034884.1 mouse_genomes_project 9 104230667 104512277 - MGP_C3HHeJ_P0093548 Tmem108 protein_coding protein_coding MGP_C3HHeJ_T0093549.1 MGP_C3HHeJ_G0034884.1 mouse_genomes_project 9 104230670 104239883 - Tmem108 protein_coding retained_intron MGP_C3HHeJ_T0093550.1 MGP_C3HHeJ_G0034884.1 mouse_genomes_project 9 104501749 104512273 - Tmem108 protein_coding retained_intron MGP_C3HHeJ_T0093506.1 MGP_C3HHeJ_G0034875.1 mouse_genomes_project 9 103711072 103744176 + Slco2a1 protein_coding processed_transcript MGP_C3HHeJ_T0093507.1 MGP_C3HHeJ_G0034875.1 mouse_genomes_project 9 103731404 103815283 + MGP_C3HHeJ_P0093507 Slco2a1 protein_coding protein_coding MGP_C3HHeJ_T0093508.1 MGP_C3HHeJ_G0034875.1 mouse_genomes_project 9 103731556 103735316 + Slco2a1 protein_coding retained_intron MGP_C3HHeJ_T0093509.1 MGP_C3HHeJ_G0034875.1 mouse_genomes_project 9 103731901 103820664 + MGP_C3HHeJ_P0093509 Slco2a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094449.1 MGP_C3HHeJ_G0035028.1 mouse_genomes_project 9 111556848 111574682 + MGP_C3HHeJ_P0094449 Elp6 protein_coding protein_coding MGP_C3HHeJ_T0094450.1 MGP_C3HHeJ_G0035028.1 mouse_genomes_project 9 111556879 111575461 + MGP_C3HHeJ_P0094450 Elp6 protein_coding protein_coding MGP_C3HHeJ_T0094451.1 MGP_C3HHeJ_G0035028.1 mouse_genomes_project 9 111556915 111572931 + MGP_C3HHeJ_P0094451 Elp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094452.1 MGP_C3HHeJ_G0035028.1 mouse_genomes_project 9 111557171 111567276 + MGP_C3HHeJ_P0094452 Elp6 protein_coding protein_coding MGP_C3HHeJ_T0094453.1 MGP_C3HHeJ_G0035028.1 mouse_genomes_project 9 111560972 111565496 + Elp6 protein_coding retained_intron MGP_C3HHeJ_T0092130.1 MGP_C3HHeJ_G0034559.1 mouse_genomes_project 9 56838877 56846135 + MGP_C3HHeJ_P0092130 Cyp1a1 protein_coding protein_coding MGP_C3HHeJ_T0092346.1 MGP_C3HHeJ_G0034613.1 mouse_genomes_project 9 62860195 63050131 - MGP_C3HHeJ_P0092346 Iqch protein_coding protein_coding MGP_C3HHeJ_T0092347.1 MGP_C3HHeJ_G0034613.1 mouse_genomes_project 9 62860357 63050086 - MGP_C3HHeJ_P0092347 Iqch protein_coding protein_coding MGP_C3HHeJ_T0092348.1 MGP_C3HHeJ_G0034613.1 mouse_genomes_project 9 62860357 63050086 - MGP_C3HHeJ_P0092348 Iqch protein_coding protein_coding MGP_C3HHeJ_T0092349.1 MGP_C3HHeJ_G0034613.1 mouse_genomes_project 9 62860399 63050121 - MGP_C3HHeJ_P0092349 Iqch protein_coding protein_coding MGP_C3HHeJ_T0092350.1 MGP_C3HHeJ_G0034613.1 mouse_genomes_project 9 62860572 63050055 - MGP_C3HHeJ_P0092350 Iqch protein_coding protein_coding MGP_C3HHeJ_T0092351.1 MGP_C3HHeJ_G0034613.1 mouse_genomes_project 9 63029448 63050123 - Iqch protein_coding retained_intron MGP_C3HHeJ_T0100946.1 MGP_C3HHeJ_G0039140.1 mouse_genomes_project 9 12568161 12568261 + snoRNA snoRNA MGP_C3HHeJ_T0009123.1 MGP_C3HHeJ_G0007322.1 mouse_genomes_project 9 17918966 18060976 + lincRNA lincRNA MGP_C3HHeJ_T0093228.1 MGP_C3HHeJ_G0034815.1 mouse_genomes_project 9 94947897 94974452 - MGP_C3HHeJ_P0093228 1190002N15Rik protein_coding protein_coding MGP_C3HHeJ_T0091355.1 MGP_C3HHeJ_G0034249.1 mouse_genomes_project 9 35760249 35774325 + MGP_C3HHeJ_P0091355 Esam protein_coding protein_coding MGP_C3HHeJ_T0091356.1 MGP_C3HHeJ_G0034249.1 mouse_genomes_project 9 35760952 35771108 + MGP_C3HHeJ_P0091356 Esam protein_coding protein_coding MGP_C3HHeJ_T0091357.1 MGP_C3HHeJ_G0034249.1 mouse_genomes_project 9 35762421 35763813 + MGP_C3HHeJ_P0091357 Esam protein_coding protein_coding MGP_C3HHeJ_T0091358.1 MGP_C3HHeJ_G0034249.1 mouse_genomes_project 9 35763095 35768195 + MGP_C3HHeJ_P0091358 Esam protein_coding protein_coding MGP_C3HHeJ_T0091359.1 MGP_C3HHeJ_G0034249.1 mouse_genomes_project 9 35770245 35773498 + Esam protein_coding retained_intron MGP_C3HHeJ_T0093244.1 MGP_C3HHeJ_G0034820.1 mouse_genomes_project 9 96112365 96173623 + MGP_C3HHeJ_P0093244 Pcolce2 protein_coding protein_coding MGP_C3HHeJ_T0093245.1 MGP_C3HHeJ_G0034820.1 mouse_genomes_project 9 96154970 96170209 + Pcolce2 protein_coding processed_transcript MGP_C3HHeJ_T0010957.1 MGP_C3HHeJ_G0009090.1 mouse_genomes_project 9 19038037 19038107 - Mir199a-1 miRNA miRNA MGP_C3HHeJ_T0091600.1 MGP_C3HHeJ_G0034383.1 mouse_genomes_project 9 42917117 42928142 - MGP_C3HHeJ_P0091600 C2cd2l protein_coding protein_coding MGP_C3HHeJ_T0092387.1 MGP_C3HHeJ_G0034623.1 mouse_genomes_project 9 63764702 63791085 + MGP_C3HHeJ_P0092387 Tipin protein_coding unknown_likely_coding MGP_C3HHeJ_T0093329.1 MGP_C3HHeJ_G0034832.1 mouse_genomes_project 9 97449916 97525956 - MGP_C3HHeJ_P0093329 Spsb4 protein_coding protein_coding MGP_C3HHeJ_T0093330.1 MGP_C3HHeJ_G0034832.1 mouse_genomes_project 9 97449919 97490540 - Spsb4 protein_coding processed_transcript MGP_C3HHeJ_T0093331.1 MGP_C3HHeJ_G0034832.1 mouse_genomes_project 9 97450406 97478320 - Spsb4 protein_coding processed_transcript MGP_C3HHeJ_T0093332.1 MGP_C3HHeJ_G0034832.1 mouse_genomes_project 9 97500389 97525877 - Spsb4 protein_coding retained_intron MGP_C3HHeJ_T0015932.1 MGP_C3HHeJ_G0014036.1 mouse_genomes_project 9 102026718 102026971 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091811.1 MGP_C3HHeJ_G0034452.1 mouse_genomes_project 9 47921772 47925621 + Tmprss5 protein_coding retained_intron MGP_C3HHeJ_T0091812.1 MGP_C3HHeJ_G0034452.1 mouse_genomes_project 9 47921772 47936501 + MGP_C3HHeJ_P0091812 Tmprss5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091813.1 MGP_C3HHeJ_G0034452.1 mouse_genomes_project 9 47921865 47935907 + MGP_C3HHeJ_P0091813 Tmprss5 protein_coding protein_coding MGP_C3HHeJ_T0091814.1 MGP_C3HHeJ_G0034452.1 mouse_genomes_project 9 47921865 47935907 + MGP_C3HHeJ_P0091814 Tmprss5 protein_coding protein_coding MGP_C3HHeJ_T0091815.1 MGP_C3HHeJ_G0034452.1 mouse_genomes_project 9 47927914 47936501 + MGP_C3HHeJ_P0091815 Tmprss5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093499.1 MGP_C3HHeJ_G0034873.1 mouse_genomes_project 9 103454251 103471288 + MGP_C3HHeJ_P0093499 Gm5627 protein_coding protein_coding MGP_C3HHeJ_T0091996.1 MGP_C3HHeJ_G0034514.1 mouse_genomes_project 9 53859086 53910426 + MGP_C3HHeJ_P0091996 Ireb2 protein_coding protein_coding MGP_C3HHeJ_T0000316.1 MGP_C3HHeJ_G0000266.1 mouse_genomes_project 9 125002193 125002260 + mt-Tc Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0091454.1 MGP_C3HHeJ_G0034326.1 mouse_genomes_project 9 38097684 38098623 + MGP_C3HHeJ_P0091454 Olfr965 protein_coding protein_coding MGP_C3HHeJ_T0093268.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96438909 96539151 + MGP_C3HHeJ_P0093268 Xrn1 protein_coding protein_coding MGP_C3HHeJ_T0093269.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96438916 96544703 + MGP_C3HHeJ_P0093269 Xrn1 protein_coding protein_coding MGP_C3HHeJ_T0093270.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96438942 96451918 + MGP_C3HHeJ_P0093270 Xrn1 protein_coding protein_coding MGP_C3HHeJ_T0093271.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96438981 96484476 + Xrn1 protein_coding retained_intron MGP_C3HHeJ_T0093272.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96439008 96539151 + Xrn1 protein_coding retained_intron MGP_C3HHeJ_T0093273.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96439011 96496778 + MGP_C3HHeJ_P0093273 Xrn1 protein_coding protein_coding MGP_C3HHeJ_T0093274.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96455837 96459452 + Xrn1 protein_coding retained_intron MGP_C3HHeJ_T0093275.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96457609 96462426 + Xrn1 protein_coding retained_intron MGP_C3HHeJ_T0093276.1 MGP_C3HHeJ_G0034824.1 mouse_genomes_project 9 96502375 96505421 + Xrn1 protein_coding retained_intron MGP_C3HHeJ_T0091927.1 MGP_C3HHeJ_G0034487.1 mouse_genomes_project 9 50978163 51019653 + MGP_C3HHeJ_P0091927 Rdx protein_coding protein_coding MGP_C3HHeJ_T0091928.1 MGP_C3HHeJ_G0034487.1 mouse_genomes_project 9 50978952 51019653 + MGP_C3HHeJ_P0091928 Rdx protein_coding protein_coding MGP_C3HHeJ_T0091929.1 MGP_C3HHeJ_G0034487.1 mouse_genomes_project 9 50978952 51006078 + MGP_C3HHeJ_P0091929 Rdx protein_coding protein_coding MGP_C3HHeJ_T0002436.1 MGP_C3HHeJ_G0002354.1 mouse_genomes_project 9 115840890 115841858 - TEC TEC MGP_C3HHeJ_T0092175.1 MGP_C3HHeJ_G0034568.1 mouse_genomes_project 9 57328327 57331284 - MGP_C3HHeJ_P0092175 Islr protein_coding protein_coding MGP_C3HHeJ_T0092176.1 MGP_C3HHeJ_G0034568.1 mouse_genomes_project 9 57328327 57330617 - MGP_C3HHeJ_P0092176 Islr protein_coding protein_coding MGP_C3HHeJ_T0094666.1 MGP_C3HHeJ_G0035073.1 mouse_genomes_project 9 116036927 116095730 - MGP_C3HHeJ_P0094666 Trim71 protein_coding protein_coding MGP_C3HHeJ_T0090877.1 MGP_C3HHeJ_G0034082.1 mouse_genomes_project 9 16945911 16946903 + MGP_C3HHeJ_P0090877 Olfr855 protein_coding protein_coding MGP_C3HHeJ_T0018334.1 MGP_C3HHeJ_G0015511.1 mouse_genomes_project 9 88775384 88777264 - Snhg5 processed_transcript lincRNA MGP_C3HHeJ_T0018335.1 MGP_C3HHeJ_G0015511.1 mouse_genomes_project 9 88775386 88777225 - Snhg5 processed_transcript lincRNA MGP_C3HHeJ_T0018336.1 MGP_C3HHeJ_G0015511.1 mouse_genomes_project 9 88775391 88776300 - Snhg5 processed_transcript lincRNA MGP_C3HHeJ_T0090957.1 MGP_C3HHeJ_G0034114.1 mouse_genomes_project 9 18472204 18483465 - MGP_C3HHeJ_P0090957 S1pr2 protein_coding protein_coding MGP_C3HHeJ_T0010964.1 MGP_C3HHeJ_G0009097.1 mouse_genomes_project 9 37414334 37414418 + Gm25032 miRNA miRNA MGP_C3HHeJ_T0091424.1 MGP_C3HHeJ_G0034302.1 mouse_genomes_project 9 37308228 37309265 + MGP_C3HHeJ_P0091424 Olfr933 protein_coding protein_coding MGP_C3HHeJ_T0100938.1 MGP_C3HHeJ_G0039132.1 mouse_genomes_project 9 194781 194911 + Gm24918 snoRNA snoRNA MGP_C3HHeJ_T0101283.1 MGP_C3HHeJ_G0039385.1 mouse_genomes_project 9 108208927 108209810 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101284.1 MGP_C3HHeJ_G0039385.1 mouse_genomes_project 9 108209496 108214722 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0009263.1 MGP_C3HHeJ_G0007434.1 mouse_genomes_project 9 120092580 120094581 - Platr11 lincRNA lincRNA MGP_C3HHeJ_T0011656.1 MGP_C3HHeJ_G0009789.1 mouse_genomes_project 9 122624318 122624639 - Gm23624 misc_RNA misc_RNA MGP_C3HHeJ_T0005411.1 MGP_C3HHeJ_G0004568.1 mouse_genomes_project 9 81778771 81791833 + D430036J16Rik antisense antisense MGP_C3HHeJ_T0005412.1 MGP_C3HHeJ_G0004568.1 mouse_genomes_project 9 81779150 81792360 + D430036J16Rik antisense antisense MGP_C3HHeJ_T0005413.1 MGP_C3HHeJ_G0004568.1 mouse_genomes_project 9 81779253 81791399 + D430036J16Rik antisense antisense MGP_C3HHeJ_T0005414.1 MGP_C3HHeJ_G0004568.1 mouse_genomes_project 9 81779578 81792289 + D430036J16Rik antisense antisense MGP_C3HHeJ_T0005415.1 MGP_C3HHeJ_G0004568.1 mouse_genomes_project 9 81779638 81791556 + D430036J16Rik antisense antisense MGP_C3HHeJ_T0005369.1 MGP_C3HHeJ_G0004540.1 mouse_genomes_project 9 50183494 50189186 + 2010007H06Rik antisense antisense MGP_C3HHeJ_T0005370.1 MGP_C3HHeJ_G0004540.1 mouse_genomes_project 9 50185276 50185902 + 2010007H06Rik antisense antisense MGP_C3HHeJ_T0101005.1 MGP_C3HHeJ_G0039199.1 mouse_genomes_project 9 109796516 109796663 - Gm23034 snoRNA snoRNA MGP_C3HHeJ_T0092975.1 MGP_C3HHeJ_G0034762.1 mouse_genomes_project 9 81771221 81781049 - MGP_C3HHeJ_P0092975 Htr1b protein_coding protein_coding MGP_C3HHeJ_T0092976.1 MGP_C3HHeJ_G0034762.1 mouse_genomes_project 9 81778563 81779836 - MGP_C3HHeJ_P0092976 Htr1b protein_coding protein_coding MGP_C3HHeJ_T0091418.1 MGP_C3HHeJ_G0034296.1 mouse_genomes_project 9 37148209 37149341 + MGP_C3HHeJ_P0091418 Olfr922 protein_coding protein_coding MGP_C3HHeJ_T0009235.1 MGP_C3HHeJ_G0007415.1 mouse_genomes_project 9 103406731 103407682 + 4930533D04Rik lincRNA lincRNA MGP_C3HHeJ_T0015954.1 MGP_C3HHeJ_G0014058.1 mouse_genomes_project 9 119065669 119067250 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010946.1 MGP_C3HHeJ_G0009079.1 mouse_genomes_project 9 5284357 5284453 + Mir1899 miRNA miRNA MGP_C3HHeJ_T0099681.1 MGP_C3HHeJ_G0037875.1 mouse_genomes_project 9 28161466 28161573 - Gm26435 snRNA snRNA MGP_C3HHeJ_T0005472.1 MGP_C3HHeJ_G0004608.1 mouse_genomes_project 9 108953171 108959810 - Gm38134 antisense antisense MGP_C3HHeJ_T0094050.1 MGP_C3HHeJ_G0034965.1 mouse_genomes_project 9 108996335 108999895 + MGP_C3HHeJ_P0094050 Gmppb protein_coding protein_coding MGP_C3HHeJ_T0094051.1 MGP_C3HHeJ_G0034965.1 mouse_genomes_project 9 108996362 108996675 + Gmppb protein_coding processed_transcript MGP_C3HHeJ_T0094052.1 MGP_C3HHeJ_G0034965.1 mouse_genomes_project 9 108996382 108999010 + Gmppb protein_coding retained_intron MGP_C3HHeJ_T0094053.1 MGP_C3HHeJ_G0034965.1 mouse_genomes_project 9 108996418 108998796 + MGP_C3HHeJ_P0094053 Gmppb protein_coding protein_coding MGP_C3HHeJ_T0094054.1 MGP_C3HHeJ_G0034965.1 mouse_genomes_project 9 108996548 108998613 + Gmppb protein_coding retained_intron MGP_C3HHeJ_T0091917.1 MGP_C3HHeJ_G0034483.1 mouse_genomes_project 9 50198161 50237259 - MGP_C3HHeJ_P0091917 1810046K07Rik protein_coding protein_coding MGP_C3HHeJ_T0091918.1 MGP_C3HHeJ_G0034483.1 mouse_genomes_project 9 50198919 50221037 - MGP_C3HHeJ_P0091918 1810046K07Rik protein_coding protein_coding MGP_C3HHeJ_T0092783.1 MGP_C3HHeJ_G0034712.1 mouse_genomes_project 9 73957297 73988865 + Wdr72 protein_coding processed_transcript MGP_C3HHeJ_T0092784.1 MGP_C3HHeJ_G0034712.1 mouse_genomes_project 9 73957297 74134463 + MGP_C3HHeJ_P0092784 Wdr72 protein_coding protein_coding MGP_C3HHeJ_T0092785.1 MGP_C3HHeJ_G0034712.1 mouse_genomes_project 9 73957345 73961310 + Wdr72 protein_coding processed_transcript MGP_C3HHeJ_T0092786.1 MGP_C3HHeJ_G0034712.1 mouse_genomes_project 9 73980400 74132983 + MGP_C3HHeJ_P0092786 Wdr72 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092787.1 MGP_C3HHeJ_G0034712.1 mouse_genomes_project 9 74125390 74134568 + Wdr72 protein_coding processed_transcript MGP_C3HHeJ_T0091913.1 MGP_C3HHeJ_G0034479.1 mouse_genomes_project 9 49980230 50002592 - MGP_C3HHeJ_P0091913 4833427G06Rik protein_coding protein_coding MGP_C3HHeJ_T0090980.1 MGP_C3HHeJ_G0034126.1 mouse_genomes_project 9 18765328 18770773 - MGP_C3HHeJ_P0090980 S1pr5 protein_coding protein_coding MGP_C3HHeJ_T0090882.1 MGP_C3HHeJ_G0034087.1 mouse_genomes_project 9 17360713 17361748 - MGP_C3HHeJ_P0090882 Olfr862 protein_coding protein_coding MGP_C3HHeJ_T0091230.1 MGP_C3HHeJ_G0034212.1 mouse_genomes_project 9 33211143 33224503 + Srpr protein_coding processed_transcript MGP_C3HHeJ_T0091243.1 MGP_C3HHeJ_G0034212.1 mouse_genomes_project 9 33221896 33229400 + MGP_C3HHeJ_P0091243 Srpr protein_coding protein_coding MGP_C3HHeJ_T0091244.1 MGP_C3HHeJ_G0034212.1 mouse_genomes_project 9 33222030 33227059 + MGP_C3HHeJ_P0091244 Srpr protein_coding unknown_likely_coding MGP_C3HHeJ_T0091245.1 MGP_C3HHeJ_G0034212.1 mouse_genomes_project 9 33222639 33223713 + Srpr protein_coding retained_intron MGP_C3HHeJ_T0091246.1 MGP_C3HHeJ_G0034212.1 mouse_genomes_project 9 33225865 33259759 + MGP_C3HHeJ_P0091246 Srpr protein_coding protein_coding MGP_C3HHeJ_T0091392.1 MGP_C3HHeJ_G0034276.1 mouse_genomes_project 9 36638994 36639945 + MGP_C3HHeJ_P0091392 Olfr898 protein_coding protein_coding MGP_C3HHeJ_T0002331.1 MGP_C3HHeJ_G0002250.1 mouse_genomes_project 9 71828146 71830822 - TEC TEC MGP_C3HHeJ_T0091116.1 MGP_C3HHeJ_G0034180.1 mouse_genomes_project 9 24490852 24518475 + MGP_C3HHeJ_P0091116 B3gat1 protein_coding protein_coding MGP_C3HHeJ_T0091117.1 MGP_C3HHeJ_G0034180.1 mouse_genomes_project 9 24490927 24513204 + MGP_C3HHeJ_P0091117 B3gat1 protein_coding protein_coding MGP_C3HHeJ_T0091118.1 MGP_C3HHeJ_G0034180.1 mouse_genomes_project 9 24490948 24520212 + MGP_C3HHeJ_P0091118 B3gat1 protein_coding protein_coding MGP_C3HHeJ_T0091119.1 MGP_C3HHeJ_G0034180.1 mouse_genomes_project 9 24490975 24515107 + MGP_C3HHeJ_P0091119 B3gat1 protein_coding protein_coding MGP_C3HHeJ_T0091120.1 MGP_C3HHeJ_G0034180.1 mouse_genomes_project 9 24508686 24518463 + MGP_C3HHeJ_P0091120 B3gat1 protein_coding protein_coding MGP_C3HHeJ_T0091121.1 MGP_C3HHeJ_G0034180.1 mouse_genomes_project 9 24512408 24520218 + MGP_C3HHeJ_P0091121 B3gat1 protein_coding protein_coding MGP_C3HHeJ_T0092853.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086478 77123788 - protein_coding retained_intron MGP_C3HHeJ_T0092854.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086478 77342912 - MGP_C3HHeJ_P0092854 protein_coding protein_coding MGP_C3HHeJ_T0092855.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086478 77342905 - MGP_C3HHeJ_P0092855 protein_coding protein_coding MGP_C3HHeJ_T0092856.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086483 77342843 - MGP_C3HHeJ_P0092856 protein_coding protein_coding MGP_C3HHeJ_T0092857.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086483 77342835 - MGP_C3HHeJ_P0092857 protein_coding protein_coding MGP_C3HHeJ_T0092858.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086486 77342958 - MGP_C3HHeJ_P0092858 protein_coding protein_coding MGP_C3HHeJ_T0092859.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086486 77246971 - MGP_C3HHeJ_P0092859 protein_coding protein_coding MGP_C3HHeJ_T0092860.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086509 77123537 - MGP_C3HHeJ_P0092860 protein_coding protein_coding MGP_C3HHeJ_T0092861.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086707 77247017 - MGP_C3HHeJ_P0092861 protein_coding protein_coding MGP_C3HHeJ_T0092862.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77086788 77246933 - MGP_C3HHeJ_P0092862 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092863.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77145579 77342903 - MGP_C3HHeJ_P0092863 protein_coding protein_coding MGP_C3HHeJ_T0092864.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77221674 77342893 - MGP_C3HHeJ_P0092864 protein_coding protein_coding MGP_C3HHeJ_T0092865.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77221677 77246980 - MGP_C3HHeJ_P0092865 protein_coding protein_coding MGP_C3HHeJ_T0092866.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77221705 77335626 - MGP_C3HHeJ_P0092866 protein_coding protein_coding MGP_C3HHeJ_T0092867.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77243500 77247172 - protein_coding retained_intron MGP_C3HHeJ_T0092868.1 MGP_C3HHeJ_G0034733.1 mouse_genomes_project 9 77341483 77349673 - protein_coding processed_transcript MGP_C3HHeJ_T0090649.1 MGP_C3HHeJ_G0033994.1 mouse_genomes_project 9 1305715 1706781 - MGP_C3HHeJ_P0090649 Gria4 protein_coding protein_coding MGP_C3HHeJ_T0090650.1 MGP_C3HHeJ_G0033994.1 mouse_genomes_project 9 1305715 1706781 - MGP_C3HHeJ_P0090650 Gria4 protein_coding protein_coding MGP_C3HHeJ_T0090651.1 MGP_C3HHeJ_G0033994.1 mouse_genomes_project 9 1369826 1706781 - MGP_C3HHeJ_P0090651 Gria4 protein_coding protein_coding MGP_C3HHeJ_T0092415.1 MGP_C3HHeJ_G0034628.1 mouse_genomes_project 9 64438327 64467091 - MGP_C3HHeJ_P0092415 Slc24a1 protein_coding protein_coding MGP_C3HHeJ_T0092906.1 MGP_C3HHeJ_G0034746.1 mouse_genomes_project 9 78403304 78431998 - MGP_C3HHeJ_P0092906 Gm8074 protein_coding protein_coding MGP_C3HHeJ_T0093409.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100235318 100243617 + MGP_C3HHeJ_P0093409 Dzip1l protein_coding protein_coding MGP_C3HHeJ_T0093410.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100235364 100277437 + MGP_C3HHeJ_P0093410 Dzip1l protein_coding protein_coding MGP_C3HHeJ_T0093411.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100235400 100277437 + MGP_C3HHeJ_P0093411 Dzip1l protein_coding protein_coding MGP_C3HHeJ_T0093412.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100235665 100277437 + MGP_C3HHeJ_P0093412 Dzip1l protein_coding protein_coding MGP_C3HHeJ_T0093413.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100240681 100277344 + MGP_C3HHeJ_P0093413 Dzip1l protein_coding protein_coding MGP_C3HHeJ_T0093414.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100252274 100259110 + Dzip1l protein_coding processed_transcript MGP_C3HHeJ_T0093415.1 MGP_C3HHeJ_G0034857.1 mouse_genomes_project 9 100258389 100261859 + Dzip1l protein_coding retained_intron MGP_C3HHeJ_T0091951.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52572025 52626395 - MGP_C3HHeJ_P0091951 Cul5 protein_coding protein_coding MGP_C3HHeJ_T0091952.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52572025 52628903 - MGP_C3HHeJ_P0091952 Cul5 protein_coding protein_coding MGP_C3HHeJ_T0091953.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52574043 52579477 - Cul5 protein_coding retained_intron MGP_C3HHeJ_T0091954.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52574467 52626399 - MGP_C3HHeJ_P0091954 Cul5 protein_coding protein_coding MGP_C3HHeJ_T0091955.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52586348 52603997 - Cul5 protein_coding retained_intron MGP_C3HHeJ_T0091956.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52591038 52626375 - Cul5 protein_coding retained_intron MGP_C3HHeJ_T0091957.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52599825 52604093 - Cul5 protein_coding retained_intron MGP_C3HHeJ_T0091958.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52603851 52615481 - Cul5 protein_coding processed_transcript MGP_C3HHeJ_T0091959.1 MGP_C3HHeJ_G0034497.1 mouse_genomes_project 9 52612152 52625960 - MGP_C3HHeJ_P0091959 Cul5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090886.1 MGP_C3HHeJ_G0034091.1 mouse_genomes_project 9 17572407 17575491 + MGP_C3HHeJ_P0090886 Olfr868 protein_coding protein_coding MGP_C3HHeJ_T0091932.1 MGP_C3HHeJ_G0034489.1 mouse_genomes_project 9 51608726 51615108 - MGP_C3HHeJ_P0091932 AI593442 protein_coding protein_coding MGP_C3HHeJ_T0010958.1 MGP_C3HHeJ_G0009091.1 mouse_genomes_project 9 19167511 19167644 - Mir1946b miRNA miRNA MGP_C3HHeJ_T0091282.1 MGP_C3HHeJ_G0034228.1 mouse_genomes_project 9 33857027 34258679 - MGP_C3HHeJ_P0091282 9230110F15Rik protein_coding protein_coding MGP_C3HHeJ_T0092468.1 MGP_C3HHeJ_G0034651.1 mouse_genomes_project 9 65483736 65498312 + MGP_C3HHeJ_P0092468 2810417H13Rik protein_coding protein_coding MGP_C3HHeJ_T0092469.1 MGP_C3HHeJ_G0034651.1 mouse_genomes_project 9 65483819 65487357 + 2810417H13Rik protein_coding retained_intron MGP_C3HHeJ_T0092470.1 MGP_C3HHeJ_G0034651.1 mouse_genomes_project 9 65483861 65486685 + 2810417H13Rik protein_coding retained_intron MGP_C3HHeJ_T0015884.1 MGP_C3HHeJ_G0013988.1 mouse_genomes_project 9 83259425 83259591 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092846.1 MGP_C3HHeJ_G0034730.1 mouse_genomes_project 9 76136245 76248309 - MGP_C3HHeJ_P0092846 Hcrtr2 protein_coding protein_coding MGP_C3HHeJ_T0092847.1 MGP_C3HHeJ_G0034730.1 mouse_genomes_project 9 76140330 76248554 - MGP_C3HHeJ_P0092847 Hcrtr2 protein_coding protein_coding MGP_C3HHeJ_T0092848.1 MGP_C3HHeJ_G0034730.1 mouse_genomes_project 9 76246374 76248020 - Hcrtr2 protein_coding retained_intron MGP_C3HHeJ_T0091571.1 MGP_C3HHeJ_G0034376.1 mouse_genomes_project 9 42736829 42741293 + MGP_C3HHeJ_P0091571 Mcam protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091572.1 MGP_C3HHeJ_G0034376.1 mouse_genomes_project 9 42737009 42744172 + MGP_C3HHeJ_P0091572 Mcam protein_coding protein_coding MGP_C3HHeJ_T0091573.1 MGP_C3HHeJ_G0034376.1 mouse_genomes_project 9 42738904 42739633 + MGP_C3HHeJ_P0091573 Mcam protein_coding protein_coding MGP_C3HHeJ_T0091574.1 MGP_C3HHeJ_G0034376.1 mouse_genomes_project 9 42739221 42742041 + Mcam protein_coding retained_intron MGP_C3HHeJ_T0094651.1 MGP_C3HHeJ_G0035065.1 mouse_genomes_project 9 115360565 115410699 + MGP_C3HHeJ_P0094651 Ubp1 protein_coding protein_coding MGP_C3HHeJ_T0094652.1 MGP_C3HHeJ_G0035065.1 mouse_genomes_project 9 115360565 115410699 + MGP_C3HHeJ_P0094652 Ubp1 protein_coding protein_coding MGP_C3HHeJ_T0094653.1 MGP_C3HHeJ_G0035065.1 mouse_genomes_project 9 115361173 115409982 + MGP_C3HHeJ_P0094653 Ubp1 protein_coding protein_coding MGP_C3HHeJ_T0092221.1 MGP_C3HHeJ_G0034580.1 mouse_genomes_project 9 58534532 58559829 + MGP_C3HHeJ_P0092221 Adpgk protein_coding protein_coding MGP_C3HHeJ_T0098563.1 MGP_C3HHeJ_G0036762.1 mouse_genomes_project 9 109572795 109573277 - Gm38163 sense_intronic sense_intronic MGP_C3HHeJ_T0091501.1 MGP_C3HHeJ_G0034353.1 mouse_genomes_project 9 39358025 39361916 + MGP_C3HHeJ_P0091501 Bsx protein_coding protein_coding MGP_C3HHeJ_T0099696.1 MGP_C3HHeJ_G0037890.1 mouse_genomes_project 9 62454705 62454863 + Gm24526 snRNA snRNA MGP_C3HHeJ_T0002434.1 MGP_C3HHeJ_G0002352.1 mouse_genomes_project 9 112342965 112343378 - TEC TEC MGP_C3HHeJ_T0010985.1 MGP_C3HHeJ_G0009118.1 mouse_genomes_project 9 64229132 64229239 - miRNA miRNA MGP_C3HHeJ_T0015852.1 MGP_C3HHeJ_G0013956.1 mouse_genomes_project 9 71744219 71744318 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101001.1 MGP_C3HHeJ_G0039195.1 mouse_genomes_project 9 105259850 105259992 - Gm25904 snoRNA snoRNA MGP_C3HHeJ_T0094715.1 MGP_C3HHeJ_G0035090.1 mouse_genomes_project 9 120201724 120282250 + MGP_C3HHeJ_P0094715 Golga4 protein_coding protein_coding MGP_C3HHeJ_T0011013.1 MGP_C3HHeJ_G0009146.1 mouse_genomes_project 9 111081155 111081223 + Mir7089 miRNA miRNA MGP_C3HHeJ_T0093824.1 MGP_C3HHeJ_G0034934.1 mouse_genomes_project 9 108258091 108267796 + MGP_C3HHeJ_P0093824 6430571L13Rik protein_coding protein_coding MGP_C3HHeJ_T0093825.1 MGP_C3HHeJ_G0034934.1 mouse_genomes_project 9 108266263 108270375 + 6430571L13Rik protein_coding processed_transcript MGP_C3HHeJ_T0094648.1 MGP_C3HHeJ_G0035064.1 mouse_genomes_project 9 115242662 115349489 + MGP_C3HHeJ_P0094648 Clasp2 protein_coding protein_coding MGP_C3HHeJ_T0094649.1 MGP_C3HHeJ_G0035064.1 mouse_genomes_project 9 115242662 115349489 + MGP_C3HHeJ_P0094649 Clasp2 protein_coding protein_coding MGP_C3HHeJ_T0094650.1 MGP_C3HHeJ_G0035064.1 mouse_genomes_project 9 115242676 115347933 + MGP_C3HHeJ_P0094650 Clasp2 protein_coding protein_coding MGP_C3HHeJ_T0093481.1 MGP_C3HHeJ_G0034871.1 mouse_genomes_project 9 103339967 103348115 + MGP_C3HHeJ_P0093481 Anapc13 protein_coding protein_coding MGP_C3HHeJ_T0093482.1 MGP_C3HHeJ_G0034871.1 mouse_genomes_project 9 103339995 103347940 + MGP_C3HHeJ_P0093482 Anapc13 protein_coding protein_coding MGP_C3HHeJ_T0093483.1 MGP_C3HHeJ_G0034871.1 mouse_genomes_project 9 103340334 103347932 + MGP_C3HHeJ_P0093483 Anapc13 protein_coding protein_coding MGP_C3HHeJ_T0093484.1 MGP_C3HHeJ_G0034871.1 mouse_genomes_project 9 103340350 103347932 + MGP_C3HHeJ_P0093484 Anapc13 protein_coding protein_coding MGP_C3HHeJ_T0093485.1 MGP_C3HHeJ_G0034871.1 mouse_genomes_project 9 103342185 103343401 + Anapc13 protein_coding retained_intron MGP_C3HHeJ_T0005456.1 MGP_C3HHeJ_G0004597.1 mouse_genomes_project 9 107812367 107814662 + 4930524O07Rik antisense antisense MGP_C3HHeJ_T0005457.1 MGP_C3HHeJ_G0004597.1 mouse_genomes_project 9 107812991 107814660 + 4930524O07Rik antisense antisense MGP_C3HHeJ_T0005458.1 MGP_C3HHeJ_G0004597.1 mouse_genomes_project 9 107813434 107816009 + 4930524O07Rik antisense antisense MGP_C3HHeJ_T0091663.1 MGP_C3HHeJ_G0034403.1 mouse_genomes_project 9 43434501 43438053 - MGP_C3HHeJ_P0091663 Ttc36 protein_coding protein_coding MGP_C3HHeJ_T0093817.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108244756 108255825 - MGP_C3HHeJ_P0093817 Hemk1 protein_coding protein_coding MGP_C3HHeJ_T0093818.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108245364 108255793 - Hemk1 protein_coding retained_intron MGP_C3HHeJ_T0093819.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108245382 108254134 - Hemk1 protein_coding processed_transcript MGP_C3HHeJ_T0093820.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108245384 108247125 - Hemk1 protein_coding retained_intron MGP_C3HHeJ_T0093821.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108245663 108255808 - MGP_C3HHeJ_P0093821 Hemk1 protein_coding protein_coding MGP_C3HHeJ_T0093822.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108247032 108248303 - Hemk1 protein_coding retained_intron MGP_C3HHeJ_T0093823.1 MGP_C3HHeJ_G0034933.1 mouse_genomes_project 9 108252616 108255777 - Hemk1 protein_coding retained_intron MGP_C3HHeJ_T0093932.1 MGP_C3HHeJ_G0034950.1 mouse_genomes_project 9 108605259 108610287 - MGP_C3HHeJ_P0093932 Gnat1 protein_coding protein_coding MGP_C3HHeJ_T0093933.1 MGP_C3HHeJ_G0034950.1 mouse_genomes_project 9 108605262 108610209 - Gnat1 protein_coding retained_intron MGP_C3HHeJ_T0093934.1 MGP_C3HHeJ_G0034950.1 mouse_genomes_project 9 108606082 108607227 - Gnat1 protein_coding retained_intron MGP_C3HHeJ_T0093935.1 MGP_C3HHeJ_G0034950.1 mouse_genomes_project 9 108607030 108608999 - Gnat1 protein_coding processed_transcript MGP_C3HHeJ_T0093936.1 MGP_C3HHeJ_G0034950.1 mouse_genomes_project 9 108607716 108610189 - Gnat1 protein_coding retained_intron MGP_C3HHeJ_T0002327.1 MGP_C3HHeJ_G0002246.1 mouse_genomes_project 9 71734897 71736892 - TEC TEC MGP_C3HHeJ_T0011005.1 MGP_C3HHeJ_G0009138.1 mouse_genomes_project 9 108144421 108144509 - Gm22238 miRNA miRNA MGP_C3HHeJ_T0002394.1 MGP_C3HHeJ_G0002312.1 mouse_genomes_project 9 101804465 101806499 + TEC TEC MGP_C3HHeJ_T0093655.1 MGP_C3HHeJ_G0034900.1 mouse_genomes_project 9 106539034 106691014 - MGP_C3HHeJ_P0093655 protein_coding protein_coding MGP_C3HHeJ_T0093656.1 MGP_C3HHeJ_G0034900.1 mouse_genomes_project 9 106540652 106690939 - MGP_C3HHeJ_P0093656 protein_coding protein_coding MGP_C3HHeJ_T0093657.1 MGP_C3HHeJ_G0034900.1 mouse_genomes_project 9 106631534 106672583 - MGP_C3HHeJ_P0093657 protein_coding protein_coding MGP_C3HHeJ_T0094331.1 MGP_C3HHeJ_G0035005.1 mouse_genomes_project 9 110014224 110030891 - MGP_C3HHeJ_P0094331 Gm42641 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094333.1 MGP_C3HHeJ_G0035005.1 mouse_genomes_project 9 110014227 110030940 - Gm42641 protein_coding retained_intron MGP_C3HHeJ_T0094335.1 MGP_C3HHeJ_G0035005.1 mouse_genomes_project 9 110014761 110016630 - MGP_C3HHeJ_P0094335 Gm42641 protein_coding protein_coding MGP_C3HHeJ_T0090863.1 MGP_C3HHeJ_G0034068.1 mouse_genomes_project 9 16310089 16311028 + MGP_C3HHeJ_P0090863 Olfr832 protein_coding protein_coding MGP_C3HHeJ_T0092073.1 MGP_C3HHeJ_G0034539.1 mouse_genomes_project 9 56030450 56064850 + MGP_C3HHeJ_P0092073 Snupn protein_coding protein_coding MGP_C3HHeJ_T0090837.1 MGP_C3HHeJ_G0034054.1 mouse_genomes_project 9 14301736 14302439 + MGP_C3HHeJ_P0090837 Gm5611 protein_coding protein_coding MGP_C3HHeJ_T0094640.1 MGP_C3HHeJ_G0035061.1 mouse_genomes_project 9 114906327 114916202 - MGP_C3HHeJ_P0094640 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0091797.1 MGP_C3HHeJ_G0034445.1 mouse_genomes_project 9 47283172 47283792 + MGP_C3HHeJ_P0091797 Gm5617 protein_coding protein_coding MGP_C3HHeJ_T0090828.1 MGP_C3HHeJ_G0034050.1 mouse_genomes_project 9 12820604 12886852 - MGP_C3HHeJ_P0090828 Ccdc67 protein_coding protein_coding MGP_C3HHeJ_T0090829.1 MGP_C3HHeJ_G0034050.1 mouse_genomes_project 9 12820610 12888037 - MGP_C3HHeJ_P0090829 Ccdc67 protein_coding protein_coding MGP_C3HHeJ_T0090830.1 MGP_C3HHeJ_G0034050.1 mouse_genomes_project 9 12821949 12888400 - MGP_C3HHeJ_P0090830 Ccdc67 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090831.1 MGP_C3HHeJ_G0034050.1 mouse_genomes_project 9 12834603 12847518 - Ccdc67 protein_coding processed_transcript MGP_C3HHeJ_T0090832.1 MGP_C3HHeJ_G0034050.1 mouse_genomes_project 9 12843544 12888018 - MGP_C3HHeJ_P0090832 Ccdc67 protein_coding protein_coding MGP_C3HHeJ_T0090653.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2237840 2252727 + MGP_C3HHeJ_P0090653 Casp4 protein_coding protein_coding MGP_C3HHeJ_T0090654.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2237861 2266236 + MGP_C3HHeJ_P0090654 Casp4 protein_coding protein_coding MGP_C3HHeJ_T0090655.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2237872 2258203 + Casp4 protein_coding retained_intron MGP_C3HHeJ_T0090656.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2237872 2257310 + MGP_C3HHeJ_P0090656 Casp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090657.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2237877 2250754 + Casp4 protein_coding retained_intron MGP_C3HHeJ_T0090658.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2250412 2265542 + MGP_C3HHeJ_P0090658 Casp4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090659.1 MGP_C3HHeJ_G0033996.1 mouse_genomes_project 9 2252361 2256194 + Casp4 protein_coding retained_intron MGP_C3HHeJ_T0093399.1 MGP_C3HHeJ_G0034854.1 mouse_genomes_project 9 100056898 100152259 - MGP_C3HHeJ_P0093399 Armc8 protein_coding protein_coding MGP_C3HHeJ_T0093400.1 MGP_C3HHeJ_G0034854.1 mouse_genomes_project 9 100099582 100152006 - MGP_C3HHeJ_P0093400 Armc8 protein_coding protein_coding MGP_C3HHeJ_T0093401.1 MGP_C3HHeJ_G0034854.1 mouse_genomes_project 9 100134151 100152023 - Armc8 protein_coding retained_intron MGP_C3HHeJ_T0098561.1 MGP_C3HHeJ_G0036760.1 mouse_genomes_project 9 102868610 102871088 - Gm29388 sense_intronic sense_intronic MGP_C3HHeJ_T0092685.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070140 72164268 + MGP_C3HHeJ_P0092685 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0092686.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070159 72165155 + MGP_C3HHeJ_P0092686 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0092687.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070159 72140504 + MGP_C3HHeJ_P0092687 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0092688.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070186 72163788 + MGP_C3HHeJ_P0092688 Zfp280d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092689.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070187 72164875 + MGP_C3HHeJ_P0092689 Zfp280d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092690.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070195 72084860 + Zfp280d protein_coding processed_transcript MGP_C3HHeJ_T0092691.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070259 72083552 + Zfp280d protein_coding processed_transcript MGP_C3HHeJ_T0092692.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070261 72098717 + Zfp280d protein_coding retained_intron MGP_C3HHeJ_T0092693.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72070284 72165139 + MGP_C3HHeJ_P0092693 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0092694.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72094846 72164894 + MGP_C3HHeJ_P0092694 Zfp280d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092695.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72098268 72122461 + MGP_C3HHeJ_P0092695 Zfp280d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092696.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72106567 72108665 + Zfp280d protein_coding retained_intron MGP_C3HHeJ_T0092697.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72111512 72113090 + Zfp280d protein_coding processed_transcript MGP_C3HHeJ_T0092698.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72111552 72123520 + MGP_C3HHeJ_P0092698 Zfp280d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092699.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72112074 72119163 + Zfp280d protein_coding retained_intron MGP_C3HHeJ_T0092700.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72122467 72128719 + Zfp280d protein_coding retained_intron MGP_C3HHeJ_T0092701.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72127657 72129747 + Zfp280d protein_coding retained_intron MGP_C3HHeJ_T0092702.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72130491 72133995 + Zfp280d protein_coding retained_intron MGP_C3HHeJ_T0092703.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72130537 72163324 + MGP_C3HHeJ_P0092703 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0092704.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72138159 72164045 + MGP_C3HHeJ_P0092704 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0092705.1 MGP_C3HHeJ_G0034695.1 mouse_genomes_project 9 72161563 72165005 + MGP_C3HHeJ_P0092705 Zfp280d protein_coding protein_coding MGP_C3HHeJ_T0018326.1 MGP_C3HHeJ_G0015507.1 mouse_genomes_project 9 79918290 79927885 + 4930429F24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0093157.1 MGP_C3HHeJ_G0034801.1 mouse_genomes_project 9 90013060 90026281 - MGP_C3HHeJ_P0093157 Ankrd34c protein_coding protein_coding MGP_C3HHeJ_T0093158.1 MGP_C3HHeJ_G0034801.1 mouse_genomes_project 9 90016292 90026251 - MGP_C3HHeJ_P0093158 Ankrd34c protein_coding protein_coding MGP_C3HHeJ_T0091203.1 MGP_C3HHeJ_G0034206.1 mouse_genomes_project 9 30379043 30503133 - MGP_C3HHeJ_P0091203 Fli1 protein_coding protein_coding MGP_C3HHeJ_T0091204.1 MGP_C3HHeJ_G0034206.1 mouse_genomes_project 9 30384896 30504399 - MGP_C3HHeJ_P0091204 Fli1 protein_coding protein_coding MGP_C3HHeJ_T0098209.1 MGP_C3HHeJ_G0036421.1 mouse_genomes_project 9 96991163 96991245 - Gm27289 rRNA rRNA MGP_C3HHeJ_T0015938.1 MGP_C3HHeJ_G0014042.1 mouse_genomes_project 9 104642784 104643178 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005397.1 MGP_C3HHeJ_G0004556.1 mouse_genomes_project 9 69181371 69183941 - Gm16144 antisense antisense MGP_C3HHeJ_T0094911.1 MGP_C3HHeJ_G0035154.1 mouse_genomes_project 9 124927976 124929069 + Tgm4 protein_coding processed_transcript MGP_C3HHeJ_T0094912.1 MGP_C3HHeJ_G0035154.1 mouse_genomes_project 9 124927978 124944215 + Tgm4 protein_coding processed_transcript MGP_C3HHeJ_T0094913.1 MGP_C3HHeJ_G0035154.1 mouse_genomes_project 9 124927978 124960312 + MGP_C3HHeJ_P0094913 Tgm4 protein_coding protein_coding MGP_C3HHeJ_T0094914.1 MGP_C3HHeJ_G0035154.1 mouse_genomes_project 9 124933617 124941797 + Tgm4 protein_coding retained_intron MGP_C3HHeJ_T0090736.1 MGP_C3HHeJ_G0034023.1 mouse_genomes_project 9 10474373 10477325 - MGP_C3HHeJ_P0090736 Jrkl protein_coding protein_coding MGP_C3HHeJ_T0092849.1 MGP_C3HHeJ_G0034731.1 mouse_genomes_project 9 76435687 76518859 - MGP_C3HHeJ_P0092849 Fam83b protein_coding protein_coding MGP_C3HHeJ_T0092850.1 MGP_C3HHeJ_G0034731.1 mouse_genomes_project 9 76436338 76493739 - MGP_C3HHeJ_P0092850 Fam83b protein_coding protein_coding MGP_C3HHeJ_T0100947.1 MGP_C3HHeJ_G0039141.1 mouse_genomes_project 9 12568348 12568481 + snoRNA snoRNA MGP_C3HHeJ_T0015844.1 MGP_C3HHeJ_G0013948.1 mouse_genomes_project 9 59051135 59051622 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091407.1 MGP_C3HHeJ_G0034291.1 mouse_genomes_project 9 36994526 36995504 - MGP_C3HHeJ_P0091407 Olfr918 protein_coding protein_coding MGP_C3HHeJ_T0005477.1 MGP_C3HHeJ_G0004613.1 mouse_genomes_project 9 111938408 111943854 - Gm42762 antisense antisense MGP_C3HHeJ_T0091930.1 MGP_C3HHeJ_G0034488.1 mouse_genomes_project 9 51044781 51100660 - MGP_C3HHeJ_P0091930 Zc3h12c protein_coding protein_coding MGP_C3HHeJ_T0091931.1 MGP_C3HHeJ_G0034488.1 mouse_genomes_project 9 51048199 51101074 - MGP_C3HHeJ_P0091931 Zc3h12c protein_coding unknown_likely_coding MGP_C3HHeJ_T0091983.1 MGP_C3HHeJ_G0034510.1 mouse_genomes_project 9 53588043 53645613 - MGP_C3HHeJ_P0091983 Acsbg1 protein_coding protein_coding MGP_C3HHeJ_T0091984.1 MGP_C3HHeJ_G0034510.1 mouse_genomes_project 9 53611633 53626922 - MGP_C3HHeJ_P0091984 Acsbg1 protein_coding protein_coding MGP_C3HHeJ_T0091985.1 MGP_C3HHeJ_G0034510.1 mouse_genomes_project 9 53611659 53631110 - MGP_C3HHeJ_P0091985 Acsbg1 protein_coding protein_coding MGP_C3HHeJ_T0091986.1 MGP_C3HHeJ_G0034510.1 mouse_genomes_project 9 53611679 53645438 - MGP_C3HHeJ_P0091986 Acsbg1 protein_coding protein_coding MGP_C3HHeJ_T0091987.1 MGP_C3HHeJ_G0034510.1 mouse_genomes_project 9 53629946 53630981 - Acsbg1 protein_coding retained_intron MGP_C3HHeJ_T0015903.1 MGP_C3HHeJ_G0014007.1 mouse_genomes_project 9 91044338 91044630 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010959.1 MGP_C3HHeJ_G0009092.1 mouse_genomes_project 9 19375116 19375176 - Mir7083 miRNA miRNA MGP_C3HHeJ_T0090891.1 MGP_C3HHeJ_G0034096.1 mouse_genomes_project 9 17782501 17783563 + MGP_C3HHeJ_P0090891 Olfr873 protein_coding protein_coding MGP_C3HHeJ_T0002389.1 MGP_C3HHeJ_G0002307.1 mouse_genomes_project 9 100804177 100805327 - TEC TEC MGP_C3HHeJ_T0090847.1 MGP_C3HHeJ_G0034057.1 mouse_genomes_project 9 15731898 15738982 + MGP_C3HHeJ_P0090847 Ubtfl1 protein_coding protein_coding MGP_C3HHeJ_T0090848.1 MGP_C3HHeJ_G0034057.1 mouse_genomes_project 9 15731900 15738805 + MGP_C3HHeJ_P0090848 Ubtfl1 protein_coding protein_coding MGP_C3HHeJ_T0090849.1 MGP_C3HHeJ_G0034057.1 mouse_genomes_project 9 15736573 15738222 + MGP_C3HHeJ_P0090849 Ubtfl1 protein_coding protein_coding MGP_C3HHeJ_T0091808.1 MGP_C3HHeJ_G0034450.1 mouse_genomes_project 9 47793267 47851430 + MGP_C3HHeJ_P0091808 Usp28 protein_coding protein_coding MGP_C3HHeJ_T0091809.1 MGP_C3HHeJ_G0034450.1 mouse_genomes_project 9 47793326 47851427 + MGP_C3HHeJ_P0091809 Usp28 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101004.1 MGP_C3HHeJ_G0039198.1 mouse_genomes_project 9 109390810 109390919 - Gm25456 snoRNA snoRNA MGP_C3HHeJ_T0094225.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109591792 109643938 - MGP_C3HHeJ_P0094225 Arih2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094226.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109591795 109643924 - MGP_C3HHeJ_P0094226 Arih2 protein_coding protein_coding MGP_C3HHeJ_T0094227.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109591800 109595437 - Arih2 protein_coding retained_intron MGP_C3HHeJ_T0094228.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109593539 109643929 - MGP_C3HHeJ_P0094228 Arih2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094229.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109593661 109598290 - MGP_C3HHeJ_P0094229 Arih2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094230.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109593796 109596182 - Arih2 protein_coding retained_intron MGP_C3HHeJ_T0094231.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109594127 109597563 - Arih2 protein_coding retained_intron MGP_C3HHeJ_T0094232.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109599502 109643930 - MGP_C3HHeJ_P0094232 Arih2 protein_coding protein_coding MGP_C3HHeJ_T0094233.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109599586 109638561 - MGP_C3HHeJ_P0094233 Arih2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094234.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109605278 109624618 - Arih2 protein_coding retained_intron MGP_C3HHeJ_T0094235.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109606278 109643862 - Arih2 protein_coding retained_intron MGP_C3HHeJ_T0094236.1 MGP_C3HHeJ_G0034992.1 mouse_genomes_project 9 109639221 109643913 - Arih2 protein_coding retained_intron MGP_C3HHeJ_T0091452.1 MGP_C3HHeJ_G0034324.1 mouse_genomes_project 9 38038877 38039813 + MGP_C3HHeJ_P0091452 Olfr963 protein_coding protein_coding MGP_C3HHeJ_T0091534.1 MGP_C3HHeJ_G0034363.1 mouse_genomes_project 9 41656997 41665505 - MGP_C3HHeJ_P0091534 Tmem136 protein_coding protein_coding MGP_C3HHeJ_T0091988.1 MGP_C3HHeJ_G0034511.1 mouse_genomes_project 9 53683235 53699124 + MGP_C3HHeJ_P0091988 Dnaja4 protein_coding protein_coding MGP_C3HHeJ_T0091989.1 MGP_C3HHeJ_G0034511.1 mouse_genomes_project 9 53683876 53693699 + MGP_C3HHeJ_P0091989 Dnaja4 protein_coding protein_coding MGP_C3HHeJ_T0091990.1 MGP_C3HHeJ_G0034511.1 mouse_genomes_project 9 53683921 53700678 + MGP_C3HHeJ_P0091990 Dnaja4 protein_coding protein_coding MGP_C3HHeJ_T0011016.1 MGP_C3HHeJ_G0009149.1 mouse_genomes_project 9 112208106 112208183 + Gm24269 miRNA miRNA MGP_C3HHeJ_T0011021.1 MGP_C3HHeJ_G0009154.1 mouse_genomes_project 9 124160437 124160576 - Mir8106 miRNA miRNA MGP_C3HHeJ_T0009231.1 MGP_C3HHeJ_G0007411.1 mouse_genomes_project 9 101109528 101111107 + Gm28166 lincRNA lincRNA MGP_C3HHeJ_T0091379.1 MGP_C3HHeJ_G0034264.1 mouse_genomes_project 9 36323835 36325408 + MGP_C3HHeJ_P0091379 Olfr884 protein_coding protein_coding MGP_C3HHeJ_T0091380.1 MGP_C3HHeJ_G0034264.1 mouse_genomes_project 9 36324478 36325408 + MGP_C3HHeJ_P0091380 Olfr884 protein_coding protein_coding MGP_C3HHeJ_T0091344.1 MGP_C3HHeJ_G0034246.1 mouse_genomes_project 9 35636435 35648552 + Robo4 protein_coding retained_intron MGP_C3HHeJ_T0091345.1 MGP_C3HHeJ_G0034246.1 mouse_genomes_project 9 35636435 35648556 + MGP_C3HHeJ_P0091345 Robo4 protein_coding protein_coding MGP_C3HHeJ_T0091346.1 MGP_C3HHeJ_G0034246.1 mouse_genomes_project 9 35636571 35648554 + MGP_C3HHeJ_P0091346 Robo4 protein_coding protein_coding MGP_C3HHeJ_T0091347.1 MGP_C3HHeJ_G0034246.1 mouse_genomes_project 9 35636584 35648555 + MGP_C3HHeJ_P0091347 Robo4 protein_coding protein_coding MGP_C3HHeJ_T0091192.1 MGP_C3HHeJ_G0034202.1 mouse_genomes_project 9 29769319 29841554 - MGP_C3HHeJ_P0091192 Barx2 protein_coding protein_coding MGP_C3HHeJ_T0015914.1 MGP_C3HHeJ_G0014018.1 mouse_genomes_project 9 95866412 95867407 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015878.1 MGP_C3HHeJ_G0013982.1 mouse_genomes_project 9 79966518 79966798 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090875.1 MGP_C3HHeJ_G0034080.1 mouse_genomes_project 9 16905623 16906541 - MGP_C3HHeJ_P0090875 Olfr853 protein_coding protein_coding MGP_C3HHeJ_T0010990.1 MGP_C3HHeJ_G0009123.1 mouse_genomes_project 9 69160738 69160826 + Mir3109 miRNA miRNA MGP_C3HHeJ_T0005379.1 MGP_C3HHeJ_G0004545.1 mouse_genomes_project 9 55309533 55323055 + Peak1os antisense antisense MGP_C3HHeJ_T0005376.1 MGP_C3HHeJ_G0004543.1 mouse_genomes_project 9 53245863 53273597 - Gldnos antisense antisense MGP_C3HHeJ_T0005398.1 MGP_C3HHeJ_G0004557.1 mouse_genomes_project 9 69713994 69715561 - Gm28731 antisense antisense MGP_C3HHeJ_T0094078.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109034172 109043215 - MGP_C3HHeJ_P0094078 Apeh protein_coding protein_coding MGP_C3HHeJ_T0094079.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109034182 109034797 - Apeh protein_coding retained_intron MGP_C3HHeJ_T0094080.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109034182 109043235 - Apeh protein_coding retained_intron MGP_C3HHeJ_T0094081.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109034682 109035237 - Apeh protein_coding retained_intron MGP_C3HHeJ_T0094082.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109034916 109037289 - Apeh protein_coding retained_intron MGP_C3HHeJ_T0094083.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109035544 109043245 - Apeh protein_coding retained_intron MGP_C3HHeJ_T0094084.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109041112 109042789 - Apeh protein_coding retained_intron MGP_C3HHeJ_T0094085.1 MGP_C3HHeJ_G0034969.1 mouse_genomes_project 9 109041391 109043248 - MGP_C3HHeJ_P0094085 Apeh protein_coding protein_coding MGP_C3HHeJ_T0093470.1 MGP_C3HHeJ_G0034869.1 mouse_genomes_project 9 103214259 103254657 + MGP_C3HHeJ_P0093470 Ky protein_coding protein_coding MGP_C3HHeJ_T0093471.1 MGP_C3HHeJ_G0034869.1 mouse_genomes_project 9 103229768 103236492 + Ky protein_coding retained_intron MGP_C3HHeJ_T0092792.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901348 74923889 + MGP_C3HHeJ_P0092792 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092793.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901348 74923870 + MGP_C3HHeJ_P0092793 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092794.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901411 74902217 + Arpp19 protein_coding retained_intron MGP_C3HHeJ_T0092795.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901411 74920413 + MGP_C3HHeJ_P0092795 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092796.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901413 74921286 + MGP_C3HHeJ_P0092796 Arpp19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092797.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901452 74923889 + MGP_C3HHeJ_P0092797 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092798.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901483 74920468 + MGP_C3HHeJ_P0092798 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092799.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901553 74920397 + MGP_C3HHeJ_P0092799 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092800.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74901651 74920380 + MGP_C3HHeJ_P0092800 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092801.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74915563 74920959 + MGP_C3HHeJ_P0092801 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0092802.1 MGP_C3HHeJ_G0034715.1 mouse_genomes_project 9 74915637 74921652 + MGP_C3HHeJ_P0092802 Arpp19 protein_coding protein_coding MGP_C3HHeJ_T0018355.1 MGP_C3HHeJ_G0015519.1 mouse_genomes_project 9 109082251 109086612 + 4930447F24Rik processed_transcript antisense MGP_C3HHeJ_T0018356.1 MGP_C3HHeJ_G0015519.1 mouse_genomes_project 9 109085562 109087275 + 4930447F24Rik processed_transcript antisense MGP_C3HHeJ_T0018357.1 MGP_C3HHeJ_G0015519.1 mouse_genomes_project 9 109086035 109086423 + 4930447F24Rik processed_transcript retained_intron MGP_C3HHeJ_T0094958.1 MGP_C3HHeJ_G0035168.1 mouse_genomes_project 9 125727770 125733048 + MGP_C3HHeJ_P0094958 Cxcr6 protein_coding protein_coding MGP_C3HHeJ_T0092499.1 MGP_C3HHeJ_G0034656.1 mouse_genomes_project 9 65722178 65735271 + MGP_C3HHeJ_P0092499 Fam96a protein_coding protein_coding MGP_C3HHeJ_T0090667.1 MGP_C3HHeJ_G0033999.1 mouse_genomes_project 9 3280289 3281809 - MGP_C3HHeJ_P0090667 Ddi1 protein_coding protein_coding MGP_C3HHeJ_T0091878.1 MGP_C3HHeJ_G0034474.1 mouse_genomes_project 9 49655557 49659984 + Fdxacb1 protein_coding retained_intron MGP_C3HHeJ_T0091879.1 MGP_C3HHeJ_G0034474.1 mouse_genomes_project 9 49655570 49658906 + MGP_C3HHeJ_P0091879 Fdxacb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091880.1 MGP_C3HHeJ_G0034474.1 mouse_genomes_project 9 49655603 49659922 + MGP_C3HHeJ_P0091880 Fdxacb1 protein_coding protein_coding MGP_C3HHeJ_T0091882.1 MGP_C3HHeJ_G0034474.1 mouse_genomes_project 9 49657377 49658852 + MGP_C3HHeJ_P0091882 Fdxacb1 protein_coding protein_coding MGP_C3HHeJ_T0094846.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579024 123604787 + MGP_C3HHeJ_P0094846 Nktr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094847.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579031 123618916 + MGP_C3HHeJ_P0094847 Nktr protein_coding protein_coding MGP_C3HHeJ_T0094848.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579033 123604705 + MGP_C3HHeJ_P0094848 Nktr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094849.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579053 123593559 + MGP_C3HHeJ_P0094849 Nktr protein_coding unknown_likely_coding MGP_C3HHeJ_T0094850.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579070 123603221 + MGP_C3HHeJ_P0094850 Nktr protein_coding protein_coding MGP_C3HHeJ_T0094851.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579072 123592092 + Nktr protein_coding retained_intron MGP_C3HHeJ_T0094852.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579098 123597518 + Nktr protein_coding retained_intron MGP_C3HHeJ_T0094853.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579153 123579876 + Nktr protein_coding processed_transcript MGP_C3HHeJ_T0094854.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579273 123610263 + MGP_C3HHeJ_P0094854 Nktr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094855.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579307 123611910 + MGP_C3HHeJ_P0094855 Nktr protein_coding protein_coding MGP_C3HHeJ_T0094856.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123579699 123593593 + MGP_C3HHeJ_P0094856 Nktr protein_coding protein_coding MGP_C3HHeJ_T0094857.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123591476 123593661 + Nktr protein_coding retained_intron MGP_C3HHeJ_T0094858.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123593224 123604741 + Nktr protein_coding retained_intron MGP_C3HHeJ_T0094859.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123612855 123616466 + MGP_C3HHeJ_P0094859 Nktr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094860.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123613284 123614717 + Nktr protein_coding retained_intron MGP_C3HHeJ_T0094861.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123613736 123616927 + MGP_C3HHeJ_P0094861 Nktr protein_coding protein_coding MGP_C3HHeJ_T0094862.1 MGP_C3HHeJ_G0035131.1 mouse_genomes_project 9 123614596 123616426 + Nktr protein_coding retained_intron MGP_C3HHeJ_T0009241.1 MGP_C3HHeJ_G0007420.1 mouse_genomes_project 9 108154024 108156811 + 1700039M15Rik lincRNA lincRNA MGP_C3HHeJ_T0090644.1 MGP_C3HHeJ_G0033989.1 mouse_genomes_project 9 252653 323490 + MGP_C3HHeJ_P0090644 Cwf19l2 protein_coding protein_coding MGP_C3HHeJ_T0090753.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10966828 10986047 - MGP_C3HHeJ_P0090753 Cep57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090754.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10966831 10986108 - MGP_C3HHeJ_P0090754 Cep57 protein_coding protein_coding MGP_C3HHeJ_T0090755.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10966861 10986011 - MGP_C3HHeJ_P0090755 Cep57 protein_coding protein_coding MGP_C3HHeJ_T0090756.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10967585 10986081 - MGP_C3HHeJ_P0090756 Cep57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090757.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10967643 10985956 - MGP_C3HHeJ_P0090757 Cep57 protein_coding protein_coding MGP_C3HHeJ_T0090758.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10967783 10969451 - Cep57 protein_coding retained_intron MGP_C3HHeJ_T0090759.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10967852 10977701 - MGP_C3HHeJ_P0090759 Cep57 protein_coding protein_coding MGP_C3HHeJ_T0090760.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10969756 10977945 - MGP_C3HHeJ_P0090760 Cep57 protein_coding protein_coding MGP_C3HHeJ_T0090761.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10972092 10977981 - Cep57 protein_coding retained_intron MGP_C3HHeJ_T0090762.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10972468 10986109 - MGP_C3HHeJ_P0090762 Cep57 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090763.1 MGP_C3HHeJ_G0034028.1 mouse_genomes_project 9 10972483 10975434 - Cep57 protein_coding retained_intron MGP_C3HHeJ_T0092490.1 MGP_C3HHeJ_G0034653.1 mouse_genomes_project 9 65654006 65661113 + MGP_C3HHeJ_P0092490 Ppib protein_coding protein_coding MGP_C3HHeJ_T0093608.1 MGP_C3HHeJ_G0034895.1 mouse_genomes_project 9 105978964 105980697 - MGP_C3HHeJ_P0093608 1700080E11Rik protein_coding protein_coding MGP_C3HHeJ_T0093609.1 MGP_C3HHeJ_G0034895.1 mouse_genomes_project 9 105979916 105980681 - MGP_C3HHeJ_P0093609 1700080E11Rik protein_coding protein_coding MGP_C3HHeJ_T0005454.1 MGP_C3HHeJ_G0004595.1 mouse_genomes_project 9 107360202 107360940 - Gm28959 antisense antisense MGP_C3HHeJ_T0009160.1 MGP_C3HHeJ_G0007355.1 mouse_genomes_project 9 56267622 56278349 + 1700041C23Rik lincRNA lincRNA MGP_C3HHeJ_T0002413.1 MGP_C3HHeJ_G0002331.1 mouse_genomes_project 9 105897336 105900615 + TEC TEC MGP_C3HHeJ_T0091396.1 MGP_C3HHeJ_G0034280.1 mouse_genomes_project 9 36726875 36727811 + MGP_C3HHeJ_P0091396 Olfr901 protein_coding protein_coding MGP_C3HHeJ_T0093755.1 MGP_C3HHeJ_G0034921.1 mouse_genomes_project 9 107419578 107421018 + MGP_C3HHeJ_P0093755 Iqcf5 protein_coding protein_coding MGP_C3HHeJ_T0002391.1 MGP_C3HHeJ_G0002309.1 mouse_genomes_project 9 101373608 101374583 + TEC TEC MGP_C3HHeJ_T0094930.1 MGP_C3HHeJ_G0035158.1 mouse_genomes_project 9 125075044 125116135 - MGP_C3HHeJ_P0094930 Cdcp1 protein_coding protein_coding MGP_C3HHeJ_T0094931.1 MGP_C3HHeJ_G0035158.1 mouse_genomes_project 9 125077284 125082273 - Cdcp1 protein_coding retained_intron MGP_C3HHeJ_T0094932.1 MGP_C3HHeJ_G0035158.1 mouse_genomes_project 9 125084848 125116096 - Cdcp1 protein_coding retained_intron MGP_C3HHeJ_T0092361.1 MGP_C3HHeJ_G0034617.1 mouse_genomes_project 9 63585643 63610843 + MGP_C3HHeJ_P0092361 Lctl protein_coding protein_coding MGP_C3HHeJ_T0092362.1 MGP_C3HHeJ_G0034617.1 mouse_genomes_project 9 63585668 63586632 + Lctl protein_coding retained_intron MGP_C3HHeJ_T0092363.1 MGP_C3HHeJ_G0034617.1 mouse_genomes_project 9 63585725 63586508 + Lctl protein_coding processed_transcript MGP_C3HHeJ_T0092364.1 MGP_C3HHeJ_G0034617.1 mouse_genomes_project 9 63585755 63610839 + MGP_C3HHeJ_P0092364 Lctl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092365.1 MGP_C3HHeJ_G0034617.1 mouse_genomes_project 9 63590042 63610830 + MGP_C3HHeJ_P0092365 Lctl protein_coding protein_coding MGP_C3HHeJ_T0092366.1 MGP_C3HHeJ_G0034617.1 mouse_genomes_project 9 63591448 63597479 + Lctl protein_coding retained_intron MGP_C3HHeJ_T0100976.1 MGP_C3HHeJ_G0039170.1 mouse_genomes_project 9 63655467 63655538 + Gm22455 snoRNA snoRNA MGP_C3HHeJ_T0101002.1 MGP_C3HHeJ_G0039196.1 mouse_genomes_project 9 108074735 108074865 + Gm23595 snoRNA snoRNA MGP_C3HHeJ_T0090880.1 MGP_C3HHeJ_G0034085.1 mouse_genomes_project 9 17078306 17079300 + MGP_C3HHeJ_P0090880 protein_coding protein_coding MGP_C3HHeJ_T0090872.1 MGP_C3HHeJ_G0034077.1 mouse_genomes_project 9 16795745 16796684 + MGP_C3HHeJ_P0090872 Olfr849 protein_coding protein_coding MGP_C3HHeJ_T0018358.1 MGP_C3HHeJ_G0015520.1 mouse_genomes_project 9 109825244 109826405 - Gm35025 processed_transcript lincRNA MGP_C3HHeJ_T0018359.1 MGP_C3HHeJ_G0015520.1 mouse_genomes_project 9 109825376 109826126 - Gm35025 processed_transcript lincRNA MGP_C3HHeJ_T0018360.1 MGP_C3HHeJ_G0015520.1 mouse_genomes_project 9 109825473 109826168 - Gm35025 processed_transcript TEC MGP_C3HHeJ_T0093071.1 MGP_C3HHeJ_G0034778.1 mouse_genomes_project 9 86812163 86814903 + MGP_C3HHeJ_P0093071 Rwdd2a protein_coding protein_coding MGP_C3HHeJ_T0093072.1 MGP_C3HHeJ_G0034778.1 mouse_genomes_project 9 86812188 86815069 + MGP_C3HHeJ_P0093072 Rwdd2a protein_coding protein_coding MGP_C3HHeJ_T0093073.1 MGP_C3HHeJ_G0034778.1 mouse_genomes_project 9 86812225 86815010 + MGP_C3HHeJ_P0093073 Rwdd2a protein_coding protein_coding MGP_C3HHeJ_T0091419.1 MGP_C3HHeJ_G0034297.1 mouse_genomes_project 9 37160133 37161201 + MGP_C3HHeJ_P0091419 Olfr923 protein_coding protein_coding MGP_C3HHeJ_T0090769.1 MGP_C3HHeJ_G0034031.1 mouse_genomes_project 9 11552806 11579942 - MGP_C3HHeJ_P0090769 Endod1 protein_coding protein_coding MGP_C3HHeJ_T0094665.1 MGP_C3HHeJ_G0035072.1 mouse_genomes_project 9 116020568 116026336 - MGP_C3HHeJ_P0094665 Ccr4 protein_coding protein_coding MGP_C3HHeJ_T0092565.1 MGP_C3HHeJ_G0034669.1 mouse_genomes_project 9 67441476 67442970 + MGP_C3HHeJ_P0092565 C2cd4b protein_coding protein_coding MGP_C3HHeJ_T0009140.1 MGP_C3HHeJ_G0007339.1 mouse_genomes_project 9 33962591 33963145 + lincRNA lincRNA MGP_C3HHeJ_T0092060.1 MGP_C3HHeJ_G0034531.1 mouse_genomes_project 9 55182943 55212197 - MGP_C3HHeJ_P0092060 Tspan3 protein_coding protein_coding MGP_C3HHeJ_T0101003.1 MGP_C3HHeJ_G0039197.1 mouse_genomes_project 9 108929890 108930018 + Gm24944 snoRNA snoRNA MGP_C3HHeJ_T0091455.1 MGP_C3HHeJ_G0034327.1 mouse_genomes_project 9 38115284 38116636 + MGP_C3HHeJ_P0091455 Olfr150 protein_coding protein_coding MGP_C3HHeJ_T0091387.1 MGP_C3HHeJ_G0034271.1 mouse_genomes_project 9 36501717 36502659 + MGP_C3HHeJ_P0091387 Olfr893 protein_coding protein_coding MGP_C3HHeJ_T0091830.1 MGP_C3HHeJ_G0034460.1 mouse_genomes_project 9 49398098 49405605 - MGP_C3HHeJ_P0091830 Pts protein_coding protein_coding MGP_C3HHeJ_T0093115.1 MGP_C3HHeJ_G0034789.1 mouse_genomes_project 9 88659957 88709074 - MGP_C3HHeJ_P0093115 Gm20537 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093117.1 MGP_C3HHeJ_G0034789.1 mouse_genomes_project 9 88673148 88708959 - MGP_C3HHeJ_P0093117 Gm20537 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009132.1 MGP_C3HHeJ_G0007331.1 mouse_genomes_project 9 28969839 28971698 - Gm17508 lincRNA lincRNA MGP_C3HHeJ_T0092869.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77429828 77563675 - MGP_C3HHeJ_P0092869 Lrrc1 protein_coding protein_coding MGP_C3HHeJ_T0092870.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77429986 77562900 - MGP_C3HHeJ_P0092870 Lrrc1 protein_coding protein_coding MGP_C3HHeJ_T0092871.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77430080 77447656 - Lrrc1 protein_coding processed_transcript MGP_C3HHeJ_T0092872.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77430095 77441164 - MGP_C3HHeJ_P0092872 Lrrc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092873.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77434061 77441460 - Lrrc1 protein_coding retained_intron MGP_C3HHeJ_T0092874.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77447661 77563655 - MGP_C3HHeJ_P0092874 Lrrc1 protein_coding protein_coding MGP_C3HHeJ_T0092875.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77457044 77504927 - Lrrc1 protein_coding processed_transcript MGP_C3HHeJ_T0092876.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77471090 77563653 - Lrrc1 protein_coding processed_transcript MGP_C3HHeJ_T0092877.1 MGP_C3HHeJ_G0034734.1 mouse_genomes_project 9 77559318 77563595 - Lrrc1 protein_coding retained_intron MGP_C3HHeJ_T0092002.1 MGP_C3HHeJ_G0034516.1 mouse_genomes_project 9 53946826 53947579 - MGP_C3HHeJ_P0092002 AY074887 protein_coding protein_coding MGP_C3HHeJ_T0091750.1 MGP_C3HHeJ_G0034430.1 mouse_genomes_project 9 44720202 44932199 + MGP_C3HHeJ_P0091750 Sik3 protein_coding protein_coding MGP_C3HHeJ_T0091751.1 MGP_C3HHeJ_G0034430.1 mouse_genomes_project 9 44720246 44930277 + MGP_C3HHeJ_P0091751 Sik3 protein_coding protein_coding MGP_C3HHeJ_T0091752.1 MGP_C3HHeJ_G0034430.1 mouse_genomes_project 9 44720382 44929236 + MGP_C3HHeJ_P0091752 Sik3 protein_coding protein_coding MGP_C3HHeJ_T0091753.1 MGP_C3HHeJ_G0034430.1 mouse_genomes_project 9 44720383 44910065 + MGP_C3HHeJ_P0091753 Sik3 protein_coding protein_coding MGP_C3HHeJ_T0091754.1 MGP_C3HHeJ_G0034430.1 mouse_genomes_project 9 44862547 44932193 + Sik3 protein_coding processed_transcript MGP_C3HHeJ_T0091755.1 MGP_C3HHeJ_G0034430.1 mouse_genomes_project 9 44927573 44929236 + MGP_C3HHeJ_P0091755 Sik3 protein_coding protein_coding MGP_C3HHeJ_T0092358.1 MGP_C3HHeJ_G0034616.1 mouse_genomes_project 9 63412239 63484241 - MGP_C3HHeJ_P0092358 Smad6 protein_coding protein_coding MGP_C3HHeJ_T0092359.1 MGP_C3HHeJ_G0034616.1 mouse_genomes_project 9 63413173 63479169 - Smad6 protein_coding processed_transcript MGP_C3HHeJ_T0092360.1 MGP_C3HHeJ_G0034616.1 mouse_genomes_project 9 63483942 63484214 - MGP_C3HHeJ_P0092360 Smad6 protein_coding protein_coding MGP_C3HHeJ_T0002406.1 MGP_C3HHeJ_G0002324.1 mouse_genomes_project 9 104173134 104175342 + TEC TEC MGP_C3HHeJ_T0091400.1 MGP_C3HHeJ_G0034284.1 mouse_genomes_project 9 36800471 36801407 + MGP_C3HHeJ_P0091400 Olfr906 protein_coding protein_coding MGP_C3HHeJ_T0005347.1 MGP_C3HHeJ_G0004523.1 mouse_genomes_project 9 19783261 19801316 - 1810064F22Rik antisense antisense MGP_C3HHeJ_T0005348.1 MGP_C3HHeJ_G0004523.1 mouse_genomes_project 9 19794257 19801337 - 1810064F22Rik antisense antisense MGP_C3HHeJ_T0005349.1 MGP_C3HHeJ_G0004523.1 mouse_genomes_project 9 19794817 19796023 - 1810064F22Rik antisense antisense MGP_C3HHeJ_T0015909.1 MGP_C3HHeJ_G0014013.1 mouse_genomes_project 9 93010266 93010732 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015849.1 MGP_C3HHeJ_G0013953.1 mouse_genomes_project 9 70639971 70640814 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092531.1 MGP_C3HHeJ_G0034663.1 mouse_genomes_project 9 66444423 66469050 - MGP_C3HHeJ_P0092531 Aph1c protein_coding protein_coding MGP_C3HHeJ_T0092532.1 MGP_C3HHeJ_G0034663.1 mouse_genomes_project 9 66446913 66468972 - MGP_C3HHeJ_P0092532 Aph1c protein_coding protein_coding MGP_C3HHeJ_T0009204.1 MGP_C3HHeJ_G0007391.1 mouse_genomes_project 9 90092558 90095752 + 1700017I07Rik lincRNA lincRNA MGP_C3HHeJ_T0092724.1 MGP_C3HHeJ_G0034698.1 mouse_genomes_project 9 72346361 72423218 + Rfx7 protein_coding processed_transcript MGP_C3HHeJ_T0092725.1 MGP_C3HHeJ_G0034698.1 mouse_genomes_project 9 72346727 72430615 + MGP_C3HHeJ_P0092725 Rfx7 protein_coding protein_coding MGP_C3HHeJ_T0092726.1 MGP_C3HHeJ_G0034698.1 mouse_genomes_project 9 72346859 72430678 + MGP_C3HHeJ_P0092726 Rfx7 protein_coding protein_coding MGP_C3HHeJ_T0092727.1 MGP_C3HHeJ_G0034698.1 mouse_genomes_project 9 72346944 72440430 + MGP_C3HHeJ_P0092727 Rfx7 protein_coding protein_coding MGP_C3HHeJ_T0092728.1 MGP_C3HHeJ_G0034698.1 mouse_genomes_project 9 72417809 72420569 + Rfx7 protein_coding retained_intron MGP_C3HHeJ_T0092729.1 MGP_C3HHeJ_G0034698.1 mouse_genomes_project 9 72428587 72430666 + Rfx7 protein_coding retained_intron MGP_C3HHeJ_T0091292.1 MGP_C3HHeJ_G0034236.1 mouse_genomes_project 9 34859695 34865316 + MGP_C3HHeJ_P0091292 Acrv1 protein_coding protein_coding MGP_C3HHeJ_T0091293.1 MGP_C3HHeJ_G0034236.1 mouse_genomes_project 9 34859729 34863838 + Acrv1 protein_coding retained_intron MGP_C3HHeJ_T0091456.1 MGP_C3HHeJ_G0034328.1 mouse_genomes_project 9 38129965 38130898 + MGP_C3HHeJ_P0091456 Olfr967 protein_coding protein_coding MGP_C3HHeJ_T0099723.1 MGP_C3HHeJ_G0037917.1 mouse_genomes_project 9 92206291 92206396 + Gm26101 snRNA snRNA MGP_C3HHeJ_T0092939.1 MGP_C3HHeJ_G0034757.1 mouse_genomes_project 9 79892846 79918080 - MGP_C3HHeJ_P0092939 Tmem30a protein_coding protein_coding MGP_C3HHeJ_T0092940.1 MGP_C3HHeJ_G0034757.1 mouse_genomes_project 9 79892846 79918157 - MGP_C3HHeJ_P0092940 Tmem30a protein_coding protein_coding MGP_C3HHeJ_T0092941.1 MGP_C3HHeJ_G0034757.1 mouse_genomes_project 9 79896434 79918080 - Tmem30a protein_coding retained_intron MGP_C3HHeJ_T0092942.1 MGP_C3HHeJ_G0034757.1 mouse_genomes_project 9 79900736 79918080 - Tmem30a protein_coding retained_intron MGP_C3HHeJ_T0094219.1 MGP_C3HHeJ_G0034991.1 mouse_genomes_project 9 109565531 109585491 - MGP_C3HHeJ_P0094219 P4htm protein_coding protein_coding MGP_C3HHeJ_T0094220.1 MGP_C3HHeJ_G0034991.1 mouse_genomes_project 9 109565848 109566227 - P4htm protein_coding processed_transcript MGP_C3HHeJ_T0094221.1 MGP_C3HHeJ_G0034991.1 mouse_genomes_project 9 109567258 109569605 - P4htm protein_coding retained_intron MGP_C3HHeJ_T0094222.1 MGP_C3HHeJ_G0034991.1 mouse_genomes_project 9 109568219 109585400 - P4htm protein_coding retained_intron MGP_C3HHeJ_T0094223.1 MGP_C3HHeJ_G0034991.1 mouse_genomes_project 9 109569659 109585404 - MGP_C3HHeJ_P0094223 P4htm protein_coding protein_coding MGP_C3HHeJ_T0094224.1 MGP_C3HHeJ_G0034991.1 mouse_genomes_project 9 109569659 109585170 - MGP_C3HHeJ_P0094224 P4htm protein_coding protein_coding MGP_C3HHeJ_T0092730.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72481620 72570185 + MGP_C3HHeJ_P0092730 Nedd4 protein_coding protein_coding MGP_C3HHeJ_T0092731.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72481712 72491259 + Nedd4 protein_coding retained_intron MGP_C3HHeJ_T0092732.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72481756 72539723 + MGP_C3HHeJ_P0092732 Nedd4 protein_coding protein_coding MGP_C3HHeJ_T0092733.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72481761 72531174 + MGP_C3HHeJ_P0092733 Nedd4 protein_coding protein_coding MGP_C3HHeJ_T0092734.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72481764 72482575 + Nedd4 protein_coding processed_transcript MGP_C3HHeJ_T0092735.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72487953 72491240 + Nedd4 protein_coding retained_intron MGP_C3HHeJ_T0092736.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72487964 72539288 + MGP_C3HHeJ_P0092736 Nedd4 protein_coding protein_coding MGP_C3HHeJ_T0092737.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72558572 72568492 + MGP_C3HHeJ_P0092737 Nedd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092738.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72561824 72567487 + Nedd4 protein_coding retained_intron MGP_C3HHeJ_T0092739.1 MGP_C3HHeJ_G0034699.1 mouse_genomes_project 9 72566181 72567597 + Nedd4 protein_coding retained_intron MGP_C3HHeJ_T0094668.1 MGP_C3HHeJ_G0035075.1 mouse_genomes_project 9 116117279 116171422 - MGP_C3HHeJ_P0094668 Cnot10 protein_coding protein_coding MGP_C3HHeJ_T0002407.1 MGP_C3HHeJ_G0002325.1 mouse_genomes_project 9 104185787 104186105 + TEC TEC MGP_C3HHeJ_T0091562.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703771 42705714 + MGP_C3HHeJ_P0091562 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091563.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703780 42705712 + MGP_C3HHeJ_P0091563 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091564.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703800 42705711 + MGP_C3HHeJ_P0091564 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091565.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703835 42705020 + MGP_C3HHeJ_P0091565 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091566.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703840 42705711 + MGP_C3HHeJ_P0091566 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091567.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703847 42704434 + MGP_C3HHeJ_P0091567 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091568.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42703901 42705299 + MGP_C3HHeJ_P0091568 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0091569.1 MGP_C3HHeJ_G0034374.1 mouse_genomes_project 9 42704041 42705071 + MGP_C3HHeJ_P0091569 C1qtnf5 protein_coding protein_coding MGP_C3HHeJ_T0092048.1 MGP_C3HHeJ_G0034528.1 mouse_genomes_project 9 54990978 55001363 - MGP_C3HHeJ_P0092048 4930563M21Rik protein_coding protein_coding MGP_C3HHeJ_T0009168.1 MGP_C3HHeJ_G0007362.1 mouse_genomes_project 9 60708495 60709892 - Gm10655 lincRNA lincRNA MGP_C3HHeJ_T0009169.1 MGP_C3HHeJ_G0007362.1 mouse_genomes_project 9 60708576 60709326 - Gm10655 lincRNA lincRNA MGP_C3HHeJ_T0093099.1 MGP_C3HHeJ_G0034785.1 mouse_genomes_project 9 87443814 87514631 - MGP_C3HHeJ_P0093099 Cep162 protein_coding protein_coding MGP_C3HHeJ_T0093100.1 MGP_C3HHeJ_G0034785.1 mouse_genomes_project 9 87459501 87470037 - Cep162 protein_coding processed_transcript MGP_C3HHeJ_T0093101.1 MGP_C3HHeJ_G0034785.1 mouse_genomes_project 9 87485444 87488714 - Cep162 protein_coding retained_intron MGP_C3HHeJ_T0093102.1 MGP_C3HHeJ_G0034785.1 mouse_genomes_project 9 87486202 87514383 - Cep162 protein_coding retained_intron MGP_C3HHeJ_T0093786.1 MGP_C3HHeJ_G0034929.1 mouse_genomes_project 9 107801739 107808251 - MGP_C3HHeJ_P0093786 Rbm15b protein_coding protein_coding MGP_C3HHeJ_T0093787.1 MGP_C3HHeJ_G0034929.1 mouse_genomes_project 9 107805568 107806437 - MGP_C3HHeJ_P0093787 Rbm15b protein_coding protein_coding MGP_C3HHeJ_T0091646.1 MGP_C3HHeJ_G0034400.1 mouse_genomes_project 9 43373167 43400203 - MGP_C3HHeJ_P0091646 Arcn1 protein_coding protein_coding MGP_C3HHeJ_T0091647.1 MGP_C3HHeJ_G0034400.1 mouse_genomes_project 9 43387268 43400156 - Arcn1 protein_coding retained_intron MGP_C3HHeJ_T0091648.1 MGP_C3HHeJ_G0034400.1 mouse_genomes_project 9 43388184 43392449 - Arcn1 protein_coding processed_transcript MGP_C3HHeJ_T0094292.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109911527 109942799 + MGP_C3HHeJ_P0094292 Col7a1 protein_coding protein_coding MGP_C3HHeJ_T0094293.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109911686 109942803 + MGP_C3HHeJ_P0094293 Col7a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094294.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109911686 109942799 + MGP_C3HHeJ_P0094294 Col7a1 protein_coding protein_coding MGP_C3HHeJ_T0094295.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109912428 109913356 + Col7a1 protein_coding retained_intron MGP_C3HHeJ_T0094296.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109925588 109926267 + Col7a1 protein_coding retained_intron MGP_C3HHeJ_T0094297.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109927618 109938139 + Col7a1 protein_coding retained_intron MGP_C3HHeJ_T0094298.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109933259 109935113 + Col7a1 protein_coding retained_intron MGP_C3HHeJ_T0094299.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109940577 109942427 + Col7a1 protein_coding retained_intron MGP_C3HHeJ_T0094300.1 MGP_C3HHeJ_G0035001.1 mouse_genomes_project 9 109940810 109941840 + Col7a1 protein_coding retained_intron MGP_C3HHeJ_T0015942.1 MGP_C3HHeJ_G0014046.1 mouse_genomes_project 9 107010539 107011137 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093671.1 MGP_C3HHeJ_G0034905.1 mouse_genomes_project 9 107086906 107092059 - MGP_C3HHeJ_P0093671 Ppm1m protein_coding protein_coding MGP_C3HHeJ_T0093672.1 MGP_C3HHeJ_G0034905.1 mouse_genomes_project 9 107086906 107091706 - MGP_C3HHeJ_P0093672 Ppm1m protein_coding protein_coding MGP_C3HHeJ_T0093673.1 MGP_C3HHeJ_G0034905.1 mouse_genomes_project 9 107087681 107089632 - MGP_C3HHeJ_P0093673 Ppm1m protein_coding protein_coding MGP_C3HHeJ_T0093674.1 MGP_C3HHeJ_G0034905.1 mouse_genomes_project 9 107090278 107091079 - Ppm1m protein_coding retained_intron MGP_C3HHeJ_T0093675.1 MGP_C3HHeJ_G0034905.1 mouse_genomes_project 9 107090688 107092526 - Ppm1m protein_coding processed_transcript MGP_C3HHeJ_T0009224.1 MGP_C3HHeJ_G0007404.1 mouse_genomes_project 9 97558768 97578240 - Gm19325 lincRNA lincRNA MGP_C3HHeJ_T0093551.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104761871 104800378 + Nphp3 protein_coding retained_intron MGP_C3HHeJ_T0093552.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104761873 104804885 + MGP_C3HHeJ_P0093552 Nphp3 protein_coding protein_coding MGP_C3HHeJ_T0093553.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104761981 104804176 + MGP_C3HHeJ_P0093553 Nphp3 protein_coding protein_coding MGP_C3HHeJ_T0093554.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104761981 104919780 + MGP_C3HHeJ_P0093554 Nphp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093555.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104762085 104777412 + Nphp3 protein_coding retained_intron MGP_C3HHeJ_T0093556.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104762094 104803390 + MGP_C3HHeJ_P0093556 Nphp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093557.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104792509 104795064 + Nphp3 protein_coding retained_intron MGP_C3HHeJ_T0093558.1 MGP_C3HHeJ_G0034885.1 mouse_genomes_project 9 104796489 104799183 + MGP_C3HHeJ_P0093558 Nphp3 protein_coding protein_coding MGP_C3HHeJ_T0098208.1 MGP_C3HHeJ_G0036420.1 mouse_genomes_project 9 87455595 87455729 + Gm24649 rRNA rRNA MGP_C3HHeJ_T0093847.1 MGP_C3HHeJ_G0034939.1 mouse_genomes_project 9 108475575 108479576 + MGP_C3HHeJ_P0093847 Zmynd10 protein_coding protein_coding MGP_C3HHeJ_T0093848.1 MGP_C3HHeJ_G0034939.1 mouse_genomes_project 9 108475581 108476147 + Zmynd10 protein_coding processed_transcript MGP_C3HHeJ_T0093849.1 MGP_C3HHeJ_G0034939.1 mouse_genomes_project 9 108475731 108479576 + MGP_C3HHeJ_P0093849 Zmynd10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093850.1 MGP_C3HHeJ_G0034939.1 mouse_genomes_project 9 108477424 108478472 + Zmynd10 protein_coding retained_intron MGP_C3HHeJ_T0093851.1 MGP_C3HHeJ_G0034939.1 mouse_genomes_project 9 108478745 108479476 + Zmynd10 protein_coding retained_intron MGP_C3HHeJ_T0005447.1 MGP_C3HHeJ_G0004590.1 mouse_genomes_project 9 106182963 106189643 + antisense antisense MGP_C3HHeJ_T0009215.1 MGP_C3HHeJ_G0007399.1 mouse_genomes_project 9 93285744 93305490 + Gm28054 lincRNA lincRNA MGP_C3HHeJ_T0092151.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57194105 57289754 - MGP_C3HHeJ_P0092151 Ccdc33 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092152.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57194112 57272670 - MGP_C3HHeJ_P0092152 Ccdc33 protein_coding protein_coding MGP_C3HHeJ_T0092153.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57194113 57289833 - MGP_C3HHeJ_P0092153 Ccdc33 protein_coding protein_coding MGP_C3HHeJ_T0092154.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57194117 57272598 - MGP_C3HHeJ_P0092154 Ccdc33 protein_coding protein_coding MGP_C3HHeJ_T0092155.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57194154 57200343 - Ccdc33 protein_coding retained_intron MGP_C3HHeJ_T0092156.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57202627 57211511 - Ccdc33 protein_coding processed_transcript MGP_C3HHeJ_T0092158.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57237796 57285373 - Ccdc33 protein_coding processed_transcript MGP_C3HHeJ_T0092159.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57247306 57252358 - Ccdc33 protein_coding retained_intron MGP_C3HHeJ_T0092162.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57256648 57272670 - Ccdc33 protein_coding retained_intron MGP_C3HHeJ_T0092163.1 MGP_C3HHeJ_G0034566.1 mouse_genomes_project 9 57282174 57289817 - MGP_C3HHeJ_P0092163 Ccdc33 protein_coding protein_coding MGP_C3HHeJ_T0092256.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59234134 59251956 - Nr2e3 protein_coding retained_intron MGP_C3HHeJ_T0092257.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59234134 59241398 - Nr2e3 protein_coding retained_intron MGP_C3HHeJ_T0092258.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59234134 59241481 - MGP_C3HHeJ_P0092258 Nr2e3 protein_coding protein_coding MGP_C3HHeJ_T0092259.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59234350 59241474 - Nr2e3 protein_coding retained_intron MGP_C3HHeJ_T0092260.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59234491 59241438 - Nr2e3 protein_coding retained_intron MGP_C3HHeJ_T0092261.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59238113 59240155 - Nr2e3 protein_coding retained_intron MGP_C3HHeJ_T0092262.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59238734 59240758 - Nr2e3 protein_coding processed_transcript MGP_C3HHeJ_T0092263.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59239961 59251952 - Nr2e3 protein_coding processed_transcript MGP_C3HHeJ_T0092264.1 MGP_C3HHeJ_G0034591.1 mouse_genomes_project 9 59240081 59241438 - Nr2e3 protein_coding retained_intron MGP_C3HHeJ_T0091140.1 MGP_C3HHeJ_G0034187.1 mouse_genomes_project 9 24800506 24868876 + MGP_C3HHeJ_P0091140 Ncapd3 protein_coding protein_coding MGP_C3HHeJ_T0091420.1 MGP_C3HHeJ_G0034298.1 mouse_genomes_project 9 37172032 37175087 + MGP_C3HHeJ_P0091420 Olfr926 protein_coding protein_coding MGP_C3HHeJ_T0094531.1 MGP_C3HHeJ_G0035044.1 mouse_genomes_project 9 112126045 112138458 + MGP_C3HHeJ_P0094531 Prss46 protein_coding protein_coding MGP_C3HHeJ_T0094532.1 MGP_C3HHeJ_G0035044.1 mouse_genomes_project 9 112130941 112138452 + MGP_C3HHeJ_P0094532 Prss46 protein_coding protein_coding MGP_C3HHeJ_T0005470.1 MGP_C3HHeJ_G0004606.1 mouse_genomes_project 9 108933876 108937849 - 4921523L03Rik antisense antisense MGP_C3HHeJ_T0091138.1 MGP_C3HHeJ_G0034185.1 mouse_genomes_project 9 24768249 24775903 + MGP_C3HHeJ_P0091138 Thyn1 protein_coding protein_coding MGP_C3HHeJ_T0091391.1 MGP_C3HHeJ_G0034275.1 mouse_genomes_project 9 36619248 36620316 + MGP_C3HHeJ_P0091391 Olfr25 protein_coding protein_coding MGP_C3HHeJ_T0091338.1 MGP_C3HHeJ_G0034242.1 mouse_genomes_project 9 35441865 35458425 + MGP_C3HHeJ_P0091338 Tmem218 protein_coding protein_coding MGP_C3HHeJ_T0092456.1 MGP_C3HHeJ_G0034648.1 mouse_genomes_project 9 65251824 65274470 + Oaz2 protein_coding processed_transcript MGP_C3HHeJ_T0092457.1 MGP_C3HHeJ_G0034648.1 mouse_genomes_project 9 65253525 65273413 + Oaz2 protein_coding processed_transcript MGP_C3HHeJ_T0092458.1 MGP_C3HHeJ_G0034648.1 mouse_genomes_project 9 65261239 65274135 + Oaz2 protein_coding retained_intron MGP_C3HHeJ_T0092459.1 MGP_C3HHeJ_G0034648.1 mouse_genomes_project 9 65261246 65275974 + MGP_C3HHeJ_P0092459 Oaz2 protein_coding protein_coding MGP_C3HHeJ_T0092460.1 MGP_C3HHeJ_G0034648.1 mouse_genomes_project 9 65261251 65274126 + MGP_C3HHeJ_P0092460 Oaz2 protein_coding protein_coding MGP_C3HHeJ_T0092461.1 MGP_C3HHeJ_G0034648.1 mouse_genomes_project 9 65273393 65275252 + MGP_C3HHeJ_P0092461 Oaz2 protein_coding protein_coding MGP_C3HHeJ_T0091960.1 MGP_C3HHeJ_G0034498.1 mouse_genomes_project 9 52643667 52667050 - MGP_C3HHeJ_P0091960 Rab39 protein_coding protein_coding MGP_C3HHeJ_T0005473.1 MGP_C3HHeJ_G0004609.1 mouse_genomes_project 9 110054450 110059255 - Gm7628 antisense antisense MGP_C3HHeJ_T0092418.1 MGP_C3HHeJ_G0034630.1 mouse_genomes_project 9 64503151 64539279 - MGP_C3HHeJ_P0092418 Hacd3 protein_coding protein_coding MGP_C3HHeJ_T0091703.1 MGP_C3HHeJ_G0034418.1 mouse_genomes_project 9 43917088 43932791 - MGP_C3HHeJ_P0091703 Il10ra protein_coding protein_coding MGP_C3HHeJ_T0091704.1 MGP_C3HHeJ_G0034418.1 mouse_genomes_project 9 43917091 43932791 - MGP_C3HHeJ_P0091704 Il10ra protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091705.1 MGP_C3HHeJ_G0034418.1 mouse_genomes_project 9 43917778 43932788 - MGP_C3HHeJ_P0091705 Il10ra protein_coding protein_coding MGP_C3HHeJ_T0091509.1 MGP_C3HHeJ_G0034356.1 mouse_genomes_project 9 39491937 39643590 - MGP_C3HHeJ_P0091509 Ubash3b protein_coding protein_coding MGP_C3HHeJ_T0091510.1 MGP_C3HHeJ_G0034356.1 mouse_genomes_project 9 39531318 39647296 - Ubash3b protein_coding processed_transcript MGP_C3HHeJ_T0091511.1 MGP_C3HHeJ_G0034356.1 mouse_genomes_project 9 39531346 39643666 - MGP_C3HHeJ_P0091511 Ubash3b protein_coding protein_coding MGP_C3HHeJ_T0091512.1 MGP_C3HHeJ_G0034356.1 mouse_genomes_project 9 39531404 39647464 - MGP_C3HHeJ_P0091512 Ubash3b protein_coding protein_coding MGP_C3HHeJ_T0091513.1 MGP_C3HHeJ_G0034356.1 mouse_genomes_project 9 39645991 39647473 - Ubash3b protein_coding processed_transcript MGP_C3HHeJ_T0093210.1 MGP_C3HHeJ_G0034809.1 mouse_genomes_project 9 92579741 92596565 + MGP_C3HHeJ_P0093210 Plscr5 protein_coding protein_coding MGP_C3HHeJ_T0091613.1 MGP_C3HHeJ_G0034389.1 mouse_genomes_project 9 43005131 43011284 + MGP_C3HHeJ_P0091613 Slc37a4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091614.1 MGP_C3HHeJ_G0034389.1 mouse_genomes_project 9 43006488 43011277 + MGP_C3HHeJ_P0091614 Slc37a4 protein_coding protein_coding MGP_C3HHeJ_T0099716.1 MGP_C3HHeJ_G0037910.1 mouse_genomes_project 9 82639482 82639579 - Gm24393 snRNA snRNA MGP_C3HHeJ_T0002321.1 MGP_C3HHeJ_G0002240.1 mouse_genomes_project 9 55318873 55320442 + TEC TEC MGP_C3HHeJ_T0093362.1 MGP_C3HHeJ_G0034841.1 mouse_genomes_project 9 99133208 99146720 - MGP_C3HHeJ_P0093362 Mrps22 protein_coding protein_coding MGP_C3HHeJ_T0093363.1 MGP_C3HHeJ_G0034841.1 mouse_genomes_project 9 99140241 99146705 - Mrps22 protein_coding retained_intron MGP_C3HHeJ_T0094073.1 MGP_C3HHeJ_G0034968.1 mouse_genomes_project 9 109029204 109033772 + MGP_C3HHeJ_P0094073 Mst1 protein_coding protein_coding MGP_C3HHeJ_T0094074.1 MGP_C3HHeJ_G0034968.1 mouse_genomes_project 9 109029222 109033764 + MGP_C3HHeJ_P0094074 Mst1 protein_coding protein_coding MGP_C3HHeJ_T0094075.1 MGP_C3HHeJ_G0034968.1 mouse_genomes_project 9 109029251 109031083 + MGP_C3HHeJ_P0094075 Mst1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094076.1 MGP_C3HHeJ_G0034968.1 mouse_genomes_project 9 109030169 109033704 + MGP_C3HHeJ_P0094076 Mst1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094077.1 MGP_C3HHeJ_G0034968.1 mouse_genomes_project 9 109033073 109033767 + MGP_C3HHeJ_P0094077 Mst1 protein_coding protein_coding MGP_C3HHeJ_T0091616.1 MGP_C3HHeJ_G0034391.1 mouse_genomes_project 9 43016117 43018824 + MGP_C3HHeJ_P0091616 Rps25 protein_coding protein_coding MGP_C3HHeJ_T0009141.1 MGP_C3HHeJ_G0007340.1 mouse_genomes_project 9 34012815 34080663 - lincRNA lincRNA MGP_C3HHeJ_T0009142.1 MGP_C3HHeJ_G0007340.1 mouse_genomes_project 9 34012862 34080777 - lincRNA lincRNA MGP_C3HHeJ_T0011012.1 MGP_C3HHeJ_G0009145.1 mouse_genomes_project 9 109927847 109927929 + Mir711 miRNA miRNA MGP_C3HHeJ_T0015867.1 MGP_C3HHeJ_G0013971.1 mouse_genomes_project 9 75001002 75002225 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093253.1 MGP_C3HHeJ_G0034822.1 mouse_genomes_project 9 96229705 96325793 - MGP_C3HHeJ_P0093253 Pls1 protein_coding protein_coding MGP_C3HHeJ_T0093254.1 MGP_C3HHeJ_G0034822.1 mouse_genomes_project 9 96260935 96296130 - MGP_C3HHeJ_P0093254 Pls1 protein_coding protein_coding MGP_C3HHeJ_T0093255.1 MGP_C3HHeJ_G0034822.1 mouse_genomes_project 9 96262308 96325818 - Pls1 protein_coding processed_transcript MGP_C3HHeJ_T0090963.1 MGP_C3HHeJ_G0034119.1 mouse_genomes_project 9 18573778 18578479 - MGP_C3HHeJ_P0090963 Zglp1 protein_coding protein_coding MGP_C3HHeJ_T0094669.1 MGP_C3HHeJ_G0035076.1 mouse_genomes_project 9 116224762 116261467 + MGP_C3HHeJ_P0094669 Dync1li1 protein_coding protein_coding MGP_C3HHeJ_T0101008.1 MGP_C3HHeJ_G0039202.1 mouse_genomes_project 9 113873086 113873219 + Gm24957 snoRNA snoRNA MGP_C3HHeJ_T0091303.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34898998 34922747 - MGP_C3HHeJ_P0091303 Stt3a protein_coding protein_coding MGP_C3HHeJ_T0091304.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34899497 34940913 - MGP_C3HHeJ_P0091304 Stt3a protein_coding protein_coding MGP_C3HHeJ_T0091305.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34920213 34940878 - MGP_C3HHeJ_P0091305 Stt3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091306.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34932347 34933351 - Stt3a protein_coding retained_intron MGP_C3HHeJ_T0091307.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34932770 34940609 - MGP_C3HHeJ_P0091307 Stt3a protein_coding protein_coding MGP_C3HHeJ_T0091308.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34935901 34940832 - Stt3a protein_coding retained_intron MGP_C3HHeJ_T0091309.1 MGP_C3HHeJ_G0034238.1 mouse_genomes_project 9 34936121 34940875 - Stt3a protein_coding retained_intron MGP_C3HHeJ_T0015931.1 MGP_C3HHeJ_G0014035.1 mouse_genomes_project 9 101970440 101970846 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092438.1 MGP_C3HHeJ_G0034642.1 mouse_genomes_project 9 64993227 65011028 + MGP_C3HHeJ_P0092438 Mtfmt protein_coding protein_coding MGP_C3HHeJ_T0092439.1 MGP_C3HHeJ_G0034642.1 mouse_genomes_project 9 64993233 65010387 + Mtfmt protein_coding retained_intron MGP_C3HHeJ_T0092440.1 MGP_C3HHeJ_G0034642.1 mouse_genomes_project 9 64994452 65004693 + Mtfmt protein_coding processed_transcript MGP_C3HHeJ_T0092441.1 MGP_C3HHeJ_G0034642.1 mouse_genomes_project 9 65000959 65010095 + Mtfmt protein_coding retained_intron MGP_C3HHeJ_T0015831.1 MGP_C3HHeJ_G0013935.1 mouse_genomes_project 9 34721142 34721534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099730.1 MGP_C3HHeJ_G0037924.1 mouse_genomes_project 9 106881011 106881088 + Gm24631 snRNA snRNA MGP_C3HHeJ_T0091417.1 MGP_C3HHeJ_G0034295.1 mouse_genomes_project 9 37101135 37104404 + MGP_C3HHeJ_P0091417 Olfr921 protein_coding protein_coding MGP_C3HHeJ_T0005359.1 MGP_C3HHeJ_G0004533.1 mouse_genomes_project 9 40541439 40554055 + Gm16214 antisense antisense MGP_C3HHeJ_T0094369.1 MGP_C3HHeJ_G0035020.1 mouse_genomes_project 9 110997314 111004604 + MGP_C3HHeJ_P0094369 Spink8 protein_coding protein_coding MGP_C3HHeJ_T0094370.1 MGP_C3HHeJ_G0035020.1 mouse_genomes_project 9 111000555 111010626 + MGP_C3HHeJ_P0094370 Spink8 protein_coding protein_coding MGP_C3HHeJ_T0094371.1 MGP_C3HHeJ_G0035020.1 mouse_genomes_project 9 111000638 111010621 + MGP_C3HHeJ_P0094371 Spink8 protein_coding protein_coding MGP_C3HHeJ_T0002349.1 MGP_C3HHeJ_G0002268.1 mouse_genomes_project 9 75577878 75578566 + TEC TEC MGP_C3HHeJ_T0005418.1 MGP_C3HHeJ_G0004571.1 mouse_genomes_project 9 86952277 86958060 + A330041J22Rik antisense antisense MGP_C3HHeJ_T0002439.1 MGP_C3HHeJ_G0002357.1 mouse_genomes_project 9 123618712 123623449 - TEC TEC MGP_C3HHeJ_T0093738.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107382573 107389226 - MGP_C3HHeJ_P0093738 Parp3 protein_coding protein_coding MGP_C3HHeJ_T0093739.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107382880 107388653 - MGP_C3HHeJ_P0093739 Parp3 protein_coding protein_coding MGP_C3HHeJ_T0093740.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107383242 107388446 - Parp3 protein_coding retained_intron MGP_C3HHeJ_T0093741.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107383242 107388946 - MGP_C3HHeJ_P0093741 Parp3 protein_coding protein_coding MGP_C3HHeJ_T0093742.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107383248 107384276 - Parp3 protein_coding retained_intron MGP_C3HHeJ_T0093743.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107386675 107388381 - MGP_C3HHeJ_P0093743 Parp3 protein_coding protein_coding MGP_C3HHeJ_T0093744.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107386882 107388873 - Parp3 protein_coding retained_intron MGP_C3HHeJ_T0093745.1 MGP_C3HHeJ_G0034917.1 mouse_genomes_project 9 107386912 107388672 - MGP_C3HHeJ_P0093745 Parp3 protein_coding protein_coding MGP_C3HHeJ_T0093597.1 MGP_C3HHeJ_G0034893.1 mouse_genomes_project 9 105880047 105912557 + MGP_C3HHeJ_P0093597 Mrpl3 protein_coding protein_coding MGP_C3HHeJ_T0093598.1 MGP_C3HHeJ_G0034893.1 mouse_genomes_project 9 105880047 105909137 + MGP_C3HHeJ_P0093598 Mrpl3 protein_coding protein_coding MGP_C3HHeJ_T0093599.1 MGP_C3HHeJ_G0034893.1 mouse_genomes_project 9 105880078 105888732 + MGP_C3HHeJ_P0093599 Mrpl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093600.1 MGP_C3HHeJ_G0034893.1 mouse_genomes_project 9 105880078 105882411 + MGP_C3HHeJ_P0093600 Mrpl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093601.1 MGP_C3HHeJ_G0034893.1 mouse_genomes_project 9 105880109 105910131 + MGP_C3HHeJ_P0093601 Mrpl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093602.1 MGP_C3HHeJ_G0034893.1 mouse_genomes_project 9 105903786 105906729 + Mrpl3 protein_coding retained_intron MGP_C3HHeJ_T0015818.1 MGP_C3HHeJ_G0013922.1 mouse_genomes_project 9 19072021 19072380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091375.1 MGP_C3HHeJ_G0034260.1 mouse_genomes_project 9 36154546 36155597 + MGP_C3HHeJ_P0091375 Olfr145 protein_coding protein_coding MGP_C3HHeJ_T0091461.1 MGP_C3HHeJ_G0034333.1 mouse_genomes_project 9 38307599 38308523 + MGP_C3HHeJ_P0091461 Olfr229 protein_coding protein_coding MGP_C3HHeJ_T0090778.1 MGP_C3HHeJ_G0034035.1 mouse_genomes_project 9 11903165 11911825 - MGP_C3HHeJ_P0090778 Piwil4 protein_coding protein_coding MGP_C3HHeJ_T0090779.1 MGP_C3HHeJ_G0034035.1 mouse_genomes_project 9 11908532 11948368 - MGP_C3HHeJ_P0090779 Piwil4 protein_coding protein_coding MGP_C3HHeJ_T0090780.1 MGP_C3HHeJ_G0034035.1 mouse_genomes_project 9 11908533 11925228 - MGP_C3HHeJ_P0090780 Piwil4 protein_coding protein_coding MGP_C3HHeJ_T0090781.1 MGP_C3HHeJ_G0034035.1 mouse_genomes_project 9 11909112 11948380 - MGP_C3HHeJ_P0090781 Piwil4 protein_coding protein_coding MGP_C3HHeJ_T0015863.1 MGP_C3HHeJ_G0013967.1 mouse_genomes_project 9 74223850 74224328 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094021.1 MGP_C3HHeJ_G0034961.1 mouse_genomes_project 9 108926744 108928401 - MGP_C3HHeJ_P0094021 Fam212a protein_coding protein_coding MGP_C3HHeJ_T0094022.1 MGP_C3HHeJ_G0034961.1 mouse_genomes_project 9 108927154 108928154 - MGP_C3HHeJ_P0094022 Fam212a protein_coding protein_coding MGP_C3HHeJ_T0002400.1 MGP_C3HHeJ_G0002318.1 mouse_genomes_project 9 102698929 102699977 + TEC TEC MGP_C3HHeJ_T0090782.1 MGP_C3HHeJ_G0034036.1 mouse_genomes_project 9 11956681 11960345 - MGP_C3HHeJ_P0090782 Fut4 protein_coding protein_coding MGP_C3HHeJ_T0010989.1 MGP_C3HHeJ_G0009122.1 mouse_genomes_project 9 67411549 67411628 - Mir7242 miRNA miRNA MGP_C3HHeJ_T0094747.1 MGP_C3HHeJ_G0035098.1 mouse_genomes_project 9 120898143 120919391 - MGP_C3HHeJ_P0094747 Slc22a14 protein_coding protein_coding MGP_C3HHeJ_T0094748.1 MGP_C3HHeJ_G0035098.1 mouse_genomes_project 9 120898144 121117930 - MGP_C3HHeJ_P0094748 Slc22a14 protein_coding protein_coding MGP_C3HHeJ_T0094749.1 MGP_C3HHeJ_G0035098.1 mouse_genomes_project 9 120898356 120902335 - MGP_C3HHeJ_P0094749 Slc22a14 protein_coding protein_coding MGP_C3HHeJ_T0094750.1 MGP_C3HHeJ_G0035098.1 mouse_genomes_project 9 120909663 120919346 - MGP_C3HHeJ_P0094750 Slc22a14 protein_coding protein_coding MGP_C3HHeJ_T0092218.1 MGP_C3HHeJ_G0034578.1 mouse_genomes_project 9 58040652 58078019 + MGP_C3HHeJ_P0092218 Hcn4 protein_coding protein_coding MGP_C3HHeJ_T0092426.1 MGP_C3HHeJ_G0034635.1 mouse_genomes_project 9 64807593 64823011 + MGP_C3HHeJ_P0092426 protein_coding protein_coding MGP_C3HHeJ_T0092427.1 MGP_C3HHeJ_G0034635.1 mouse_genomes_project 9 64808237 64822941 + MGP_C3HHeJ_P0092427 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090966.1 MGP_C3HHeJ_G0034122.1 mouse_genomes_project 9 18615888 18645306 - MGP_C3HHeJ_P0090966 Tyk2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090967.1 MGP_C3HHeJ_G0034122.1 mouse_genomes_project 9 18615893 18641405 - MGP_C3HHeJ_P0090967 Tyk2 protein_coding protein_coding MGP_C3HHeJ_T0094604.1 MGP_C3HHeJ_G0035058.1 mouse_genomes_project 9 112749082 112801242 + MGP_C3HHeJ_P0094604 Dclk3 protein_coding protein_coding MGP_C3HHeJ_T0010956.1 MGP_C3HHeJ_G0009089.1 mouse_genomes_project 9 18586882 18586974 - Mir7082 miRNA miRNA MGP_C3HHeJ_T0002429.1 MGP_C3HHeJ_G0002347.1 mouse_genomes_project 9 111262668 111264284 + TEC TEC MGP_C3HHeJ_T0093105.1 MGP_C3HHeJ_G0034787.1 mouse_genomes_project 9 88571535 88617598 + MGP_C3HHeJ_P0093105 Nt5e protein_coding protein_coding MGP_C3HHeJ_T0093106.1 MGP_C3HHeJ_G0034787.1 mouse_genomes_project 9 88572026 88575610 + Nt5e protein_coding retained_intron MGP_C3HHeJ_T0093107.1 MGP_C3HHeJ_G0034787.1 mouse_genomes_project 9 88572041 88613325 + Nt5e protein_coding retained_intron MGP_C3HHeJ_T0091258.1 MGP_C3HHeJ_G0034216.1 mouse_genomes_project 9 33430387 33465586 + MGP_C3HHeJ_P0091258 Cdon protein_coding protein_coding MGP_C3HHeJ_T0091259.1 MGP_C3HHeJ_G0034216.1 mouse_genomes_project 9 33430813 33465561 + MGP_C3HHeJ_P0091259 Cdon protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091260.1 MGP_C3HHeJ_G0034216.1 mouse_genomes_project 9 33430856 33519619 + MGP_C3HHeJ_P0091260 Cdon protein_coding protein_coding MGP_C3HHeJ_T0091261.1 MGP_C3HHeJ_G0034216.1 mouse_genomes_project 9 33432854 33482275 + MGP_C3HHeJ_P0091261 Cdon protein_coding protein_coding MGP_C3HHeJ_T0091262.1 MGP_C3HHeJ_G0034216.1 mouse_genomes_project 9 33462294 33519618 + MGP_C3HHeJ_P0091262 Cdon protein_coding protein_coding MGP_C3HHeJ_T0091263.1 MGP_C3HHeJ_G0034216.1 mouse_genomes_project 9 33467664 33481204 + MGP_C3HHeJ_P0091263 Cdon protein_coding protein_coding MGP_C3HHeJ_T0002364.1 MGP_C3HHeJ_G0002282.1 mouse_genomes_project 9 87442573 87443651 - TEC TEC MGP_C3HHeJ_T0092111.1 MGP_C3HHeJ_G0034545.1 mouse_genomes_project 9 56344499 56357667 + MGP_C3HHeJ_P0092111 Trcg1 protein_coding protein_coding MGP_C3HHeJ_T0093195.1 MGP_C3HHeJ_G0034807.1 mouse_genomes_project 9 91708288 91715874 - MGP_C3HHeJ_P0093195 Zic1 protein_coding protein_coding MGP_C3HHeJ_T0093196.1 MGP_C3HHeJ_G0034807.1 mouse_genomes_project 9 91710730 91715916 - MGP_C3HHeJ_P0093196 Zic1 protein_coding protein_coding MGP_C3HHeJ_T0093197.1 MGP_C3HHeJ_G0034807.1 mouse_genomes_project 9 91711809 91713276 - Zic1 protein_coding processed_transcript MGP_C3HHeJ_T0091172.1 MGP_C3HHeJ_G0034197.1 mouse_genomes_project 9 28978624 29021746 - MGP_C3HHeJ_P0091172 St14 protein_coding protein_coding MGP_C3HHeJ_T0091173.1 MGP_C3HHeJ_G0034197.1 mouse_genomes_project 9 28989219 29021689 - St14 protein_coding retained_intron MGP_C3HHeJ_T0091174.1 MGP_C3HHeJ_G0034197.1 mouse_genomes_project 9 28989819 28992736 - St14 protein_coding retained_intron MGP_C3HHeJ_T0091175.1 MGP_C3HHeJ_G0034197.1 mouse_genomes_project 9 28995953 29021689 - MGP_C3HHeJ_P0091175 St14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099692.1 MGP_C3HHeJ_G0037886.1 mouse_genomes_project 9 48669703 48669810 - Gm25633 snRNA snRNA MGP_C3HHeJ_T0094359.1 MGP_C3HHeJ_G0035014.1 mouse_genomes_project 9 110297181 110611337 - MGP_C3HHeJ_P0094359 protein_coding protein_coding MGP_C3HHeJ_T0094361.1 MGP_C3HHeJ_G0035014.1 mouse_genomes_project 9 110416569 110468839 - MGP_C3HHeJ_P0094361 protein_coding protein_coding MGP_C3HHeJ_T0091587.1 MGP_C3HHeJ_G0034379.1 mouse_genomes_project 9 42847283 42851436 - MGP_C3HHeJ_P0091587 Pdzd3 protein_coding protein_coding MGP_C3HHeJ_T0009239.1 MGP_C3HHeJ_G0007418.1 mouse_genomes_project 9 105128058 105155138 + Gm28548 lincRNA lincRNA MGP_C3HHeJ_T0100949.1 MGP_C3HHeJ_G0039143.1 mouse_genomes_project 9 12578134 12578210 - Gm24339 snoRNA snoRNA MGP_C3HHeJ_T0091111.1 MGP_C3HHeJ_G0034177.1 mouse_genomes_project 9 22801629 22846062 - MGP_C3HHeJ_P0091111 Herpud2 protein_coding protein_coding MGP_C3HHeJ_T0091586.1 MGP_C3HHeJ_G0034378.1 mouse_genomes_project 9 42840739 42847278 + MGP_C3HHeJ_P0091586 Ccdc153 protein_coding protein_coding MGP_C3HHeJ_T0011641.1 MGP_C3HHeJ_G0009774.1 mouse_genomes_project 9 41051355 41051414 - Gm24420 misc_RNA misc_RNA MGP_C3HHeJ_T0005469.1 MGP_C3HHeJ_G0004605.1 mouse_genomes_project 9 108877780 108879098 - Gm37974 antisense antisense MGP_C3HHeJ_T0092566.1 MGP_C3HHeJ_G0034670.1 mouse_genomes_project 9 67515346 67517145 - MGP_C3HHeJ_P0092566 C2cd4a protein_coding protein_coding MGP_C3HHeJ_T0009148.1 MGP_C3HHeJ_G0007346.1 mouse_genomes_project 9 42725089 42736846 - Gm10687 lincRNA lincRNA MGP_C3HHeJ_T0099715.1 MGP_C3HHeJ_G0037909.1 mouse_genomes_project 9 82614239 82614300 - Gm22836 snRNA snRNA MGP_C3HHeJ_T0092284.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60710064 60756196 + MGP_C3HHeJ_P0092284 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092285.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60710081 60755604 + MGP_C3HHeJ_P0092285 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092286.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60710557 60756186 + MGP_C3HHeJ_P0092286 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092287.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711080 60747060 + MGP_C3HHeJ_P0092287 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092288.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711084 60755536 + MGP_C3HHeJ_P0092288 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092289.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711115 60745134 + MGP_C3HHeJ_P0092289 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092290.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711137 60754415 + MGP_C3HHeJ_P0092290 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092291.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711137 60754415 + MGP_C3HHeJ_P0092291 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092292.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711137 60754415 + MGP_C3HHeJ_P0092292 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092293.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711181 60739576 + MGP_C3HHeJ_P0092293 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092294.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60711213 60754675 + MGP_C3HHeJ_P0092294 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092295.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60712029 60732323 + MGP_C3HHeJ_P0092295 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092296.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60713227 60754675 + MGP_C3HHeJ_P0092296 Tle3 protein_coding protein_coding MGP_C3HHeJ_T0092297.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60739542 60747829 + Tle3 protein_coding processed_transcript MGP_C3HHeJ_T0092298.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60740144 60755534 + Tle3 protein_coding retained_intron MGP_C3HHeJ_T0092299.1 MGP_C3HHeJ_G0034597.1 mouse_genomes_project 9 60747631 60756118 + Tle3 protein_coding processed_transcript MGP_C3HHeJ_T0090879.1 MGP_C3HHeJ_G0034084.1 mouse_genomes_project 9 17074951 17079300 + MGP_C3HHeJ_P0090879 protein_coding protein_coding MGP_C3HHeJ_T0002374.1 MGP_C3HHeJ_G0002292.1 mouse_genomes_project 9 91683226 91685045 - TEC TEC MGP_C3HHeJ_T0098213.1 MGP_C3HHeJ_G0036425.1 mouse_genomes_project 9 103734823 103734927 - n-R5s89 rRNA rRNA MGP_C3HHeJ_T0091603.1 MGP_C3HHeJ_G0034386.1 mouse_genomes_project 9 42948638 42957904 - MGP_C3HHeJ_P0091603 Hmbs protein_coding protein_coding MGP_C3HHeJ_T0093388.1 MGP_C3HHeJ_G0034852.1 mouse_genomes_project 9 99879145 99930617 - MGP_C3HHeJ_P0093388 Esyt3 protein_coding protein_coding MGP_C3HHeJ_T0093389.1 MGP_C3HHeJ_G0034852.1 mouse_genomes_project 9 99888742 99892914 - Esyt3 protein_coding retained_intron MGP_C3HHeJ_T0093390.1 MGP_C3HHeJ_G0034852.1 mouse_genomes_project 9 99888786 99895221 - MGP_C3HHeJ_P0093390 Esyt3 protein_coding protein_coding MGP_C3HHeJ_T0093391.1 MGP_C3HHeJ_G0034852.1 mouse_genomes_project 9 99904965 99911058 - Esyt3 protein_coding retained_intron MGP_C3HHeJ_T0093392.1 MGP_C3HHeJ_G0034852.1 mouse_genomes_project 9 99927696 99930656 - Esyt3 protein_coding retained_intron MGP_C3HHeJ_T0093369.1 MGP_C3HHeJ_G0034847.1 mouse_genomes_project 9 99550489 99566688 + MGP_C3HHeJ_P0093369 Faim protein_coding protein_coding MGP_C3HHeJ_T0093370.1 MGP_C3HHeJ_G0034847.1 mouse_genomes_project 9 99550497 99554760 + Faim protein_coding retained_intron MGP_C3HHeJ_T0093371.1 MGP_C3HHeJ_G0034847.1 mouse_genomes_project 9 99550503 99557336 + Faim protein_coding retained_intron MGP_C3HHeJ_T0093372.1 MGP_C3HHeJ_G0034847.1 mouse_genomes_project 9 99555928 99566672 + MGP_C3HHeJ_P0093372 Faim protein_coding protein_coding MGP_C3HHeJ_T0092382.1 MGP_C3HHeJ_G0034621.1 mouse_genomes_project 9 63664025 63735703 - MGP_C3HHeJ_P0092382 Map2k1 protein_coding protein_coding MGP_C3HHeJ_T0092383.1 MGP_C3HHeJ_G0034621.1 mouse_genomes_project 9 63664784 63666120 - Map2k1 protein_coding retained_intron MGP_C3HHeJ_T0092384.1 MGP_C3HHeJ_G0034621.1 mouse_genomes_project 9 63664992 63666512 - Map2k1 protein_coding retained_intron MGP_C3HHeJ_T0092385.1 MGP_C3HHeJ_G0034621.1 mouse_genomes_project 9 63665544 63673927 - Map2k1 protein_coding processed_transcript MGP_C3HHeJ_T0090883.1 MGP_C3HHeJ_G0034088.1 mouse_genomes_project 9 17384684 17389966 + MGP_C3HHeJ_P0090883 Olfr77 protein_coding protein_coding MGP_C3HHeJ_T0011011.1 MGP_C3HHeJ_G0009144.1 mouse_genomes_project 9 109845887 109845973 + Gm23156 miRNA miRNA MGP_C3HHeJ_T0005491.1 MGP_C3HHeJ_G0004623.1 mouse_genomes_project 9 125552169 125554107 + Gm17120 antisense antisense MGP_C3HHeJ_T0015894.1 MGP_C3HHeJ_G0013998.1 mouse_genomes_project 9 88286797 88287385 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092433.1 MGP_C3HHeJ_G0034638.1 mouse_genomes_project 9 64910617 64935171 + MGP_C3HHeJ_P0092433 Ubap1l protein_coding protein_coding MGP_C3HHeJ_T0091937.1 MGP_C3HHeJ_G0034492.1 mouse_genomes_project 9 52336027 52354459 + MGP_C3HHeJ_P0091937 Kdelc2 protein_coding protein_coding MGP_C3HHeJ_T0090981.1 MGP_C3HHeJ_G0034127.1 mouse_genomes_project 9 18789073 18798097 + MGP_C3HHeJ_P0090981 Atg4d protein_coding protein_coding MGP_C3HHeJ_T0099711.1 MGP_C3HHeJ_G0037905.1 mouse_genomes_project 9 72451617 72451724 + Gm23057 snRNA snRNA MGP_C3HHeJ_T0018288.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 39871161 40095740 + processed_transcript lincRNA MGP_C3HHeJ_T0018289.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 39871290 39992993 + processed_transcript lincRNA MGP_C3HHeJ_T0018290.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 39871325 39930034 + processed_transcript lincRNA MGP_C3HHeJ_T0018291.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 39977329 40096197 + processed_transcript lincRNA MGP_C3HHeJ_T0018292.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 39977437 40123059 + processed_transcript lincRNA MGP_C3HHeJ_T0018293.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40085368 40098549 + processed_transcript lincRNA MGP_C3HHeJ_T0018294.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40085849 40098552 + processed_transcript lincRNA MGP_C3HHeJ_T0018295.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40086600 40098550 + processed_transcript processed_transcript MGP_C3HHeJ_T0018296.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40087111 40120639 + processed_transcript lincRNA MGP_C3HHeJ_T0018297.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40087125 40122863 + processed_transcript lincRNA MGP_C3HHeJ_T0018298.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40087197 40098209 + processed_transcript lincRNA MGP_C3HHeJ_T0018299.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40094216 40098460 + processed_transcript retained_intron MGP_C3HHeJ_T0018300.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40106404 40120605 + processed_transcript lincRNA MGP_C3HHeJ_T0018301.1 MGP_C3HHeJ_G0015496.1 mouse_genomes_project 9 40122110 40125644 + processed_transcript retained_intron MGP_C3HHeJ_T0092126.1 MGP_C3HHeJ_G0034556.1 mouse_genomes_project 9 56741190 56757229 - MGP_C3HHeJ_P0092126 Lman1l protein_coding protein_coding MGP_C3HHeJ_T0092127.1 MGP_C3HHeJ_G0034556.1 mouse_genomes_project 9 56741190 56757229 - MGP_C3HHeJ_P0092127 Lman1l protein_coding protein_coding MGP_C3HHeJ_T0092533.1 MGP_C3HHeJ_G0034664.1 mouse_genomes_project 9 66477982 66558008 - MGP_C3HHeJ_P0092533 Rab8b protein_coding protein_coding MGP_C3HHeJ_T0094571.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112413855 112501557 + MGP_C3HHeJ_P0094571 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094572.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112414374 112527879 + MGP_C3HHeJ_P0094572 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094573.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112414376 112526433 + MGP_C3HHeJ_P0094573 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094574.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112414398 112527879 + MGP_C3HHeJ_P0094574 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094575.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112414466 112527881 + MGP_C3HHeJ_P0094575 Lrrfip2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094576.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112414708 112526433 + MGP_C3HHeJ_P0094576 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094577.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112415939 112526433 + MGP_C3HHeJ_P0094577 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094579.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112485944 112516410 + MGP_C3HHeJ_P0094579 Lrrfip2 protein_coding protein_coding MGP_C3HHeJ_T0094580.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112493793 112527879 + Lrrfip2 protein_coding processed_transcript MGP_C3HHeJ_T0094581.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112501236 112507630 + Lrrfip2 protein_coding retained_intron MGP_C3HHeJ_T0094582.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112516403 112518720 + Lrrfip2 protein_coding retained_intron MGP_C3HHeJ_T0094583.1 MGP_C3HHeJ_G0035054.1 mouse_genomes_project 9 112521380 112526164 + Lrrfip2 protein_coding retained_intron MGP_C3HHeJ_T0091682.1 MGP_C3HHeJ_G0034409.1 mouse_genomes_project 9 43640788 43651772 - MGP_C3HHeJ_P0091682 Cd3e protein_coding protein_coding MGP_C3HHeJ_T0094964.1 MGP_C3HHeJ_G0035172.1 mouse_genomes_project 9 125945039 125960211 + MGP_C3HHeJ_P0094964 Ccr3 protein_coding protein_coding MGP_C3HHeJ_T0092386.1 MGP_C3HHeJ_G0034622.1 mouse_genomes_project 9 63717159 63718684 + MGP_C3HHeJ_P0092386 Uchl4 protein_coding protein_coding MGP_C3HHeJ_T0093676.1 MGP_C3HHeJ_G0034906.1 mouse_genomes_project 9 107095767 107108886 + MGP_C3HHeJ_P0093676 Twf2 protein_coding protein_coding MGP_C3HHeJ_T0093677.1 MGP_C3HHeJ_G0034906.1 mouse_genomes_project 9 107095796 107105099 + MGP_C3HHeJ_P0093677 Twf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093678.1 MGP_C3HHeJ_G0034906.1 mouse_genomes_project 9 107095804 107106319 + MGP_C3HHeJ_P0093678 Twf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093679.1 MGP_C3HHeJ_G0034906.1 mouse_genomes_project 9 107099547 107108884 + MGP_C3HHeJ_P0093679 Twf2 protein_coding protein_coding MGP_C3HHeJ_T0093680.1 MGP_C3HHeJ_G0034906.1 mouse_genomes_project 9 107107724 107108518 + Twf2 protein_coding retained_intron MGP_C3HHeJ_T0090764.1 MGP_C3HHeJ_G0034029.1 mouse_genomes_project 9 10986771 11006579 + MGP_C3HHeJ_P0090764 Fam76b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090765.1 MGP_C3HHeJ_G0034029.1 mouse_genomes_project 9 10986771 11006579 + MGP_C3HHeJ_P0090765 Fam76b protein_coding protein_coding MGP_C3HHeJ_T0090766.1 MGP_C3HHeJ_G0034029.1 mouse_genomes_project 9 10986790 10990313 + Fam76b protein_coding retained_intron MGP_C3HHeJ_T0090767.1 MGP_C3HHeJ_G0034029.1 mouse_genomes_project 9 10995758 10999122 + Fam76b protein_coding retained_intron MGP_C3HHeJ_T0092960.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80304335 80465757 + MGP_C3HHeJ_P0092960 Myo6 protein_coding protein_coding MGP_C3HHeJ_T0092961.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80304342 80307321 + Myo6 protein_coding retained_intron MGP_C3HHeJ_T0092962.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80304344 80465756 + MGP_C3HHeJ_P0092962 Myo6 protein_coding protein_coding MGP_C3HHeJ_T0092963.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80304531 80462123 + MGP_C3HHeJ_P0092963 Myo6 protein_coding protein_coding MGP_C3HHeJ_T0092964.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80360943 80462076 + MGP_C3HHeJ_P0092964 Myo6 protein_coding protein_coding MGP_C3HHeJ_T0092965.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80360961 80465757 + MGP_C3HHeJ_P0092965 Myo6 protein_coding protein_coding MGP_C3HHeJ_T0092966.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80360969 80465757 + MGP_C3HHeJ_P0092966 Myo6 protein_coding protein_coding MGP_C3HHeJ_T0092967.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80416167 80420770 + Myo6 protein_coding retained_intron MGP_C3HHeJ_T0092968.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80439484 80440579 + Myo6 protein_coding retained_intron MGP_C3HHeJ_T0092969.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80440351 80446674 + Myo6 protein_coding retained_intron MGP_C3HHeJ_T0092970.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80459790 80461821 + Myo6 protein_coding processed_transcript MGP_C3HHeJ_T0092971.1 MGP_C3HHeJ_G0034760.1 mouse_genomes_project 9 80460939 80462629 + Myo6 protein_coding retained_intron MGP_C3HHeJ_T0093451.1 MGP_C3HHeJ_G0034864.1 mouse_genomes_project 9 101669063 101724396 - MGP_C3HHeJ_P0093451 Pccb protein_coding protein_coding MGP_C3HHeJ_T0093452.1 MGP_C3HHeJ_G0034864.1 mouse_genomes_project 9 101669063 101724375 - MGP_C3HHeJ_P0093452 Pccb protein_coding protein_coding MGP_C3HHeJ_T0093453.1 MGP_C3HHeJ_G0034864.1 mouse_genomes_project 9 101671398 101672682 - Pccb protein_coding retained_intron MGP_C3HHeJ_T0093454.1 MGP_C3HHeJ_G0034864.1 mouse_genomes_project 9 101684396 101724369 - MGP_C3HHeJ_P0093454 Pccb protein_coding protein_coding MGP_C3HHeJ_T0093455.1 MGP_C3HHeJ_G0034864.1 mouse_genomes_project 9 101701473 101724358 - Pccb protein_coding processed_transcript MGP_C3HHeJ_T0093456.1 MGP_C3HHeJ_G0034864.1 mouse_genomes_project 9 101713150 101724379 - MGP_C3HHeJ_P0093456 Pccb protein_coding protein_coding MGP_C3HHeJ_T0092899.1 MGP_C3HHeJ_G0034741.1 mouse_genomes_project 9 78239189 78256674 + MGP_C3HHeJ_P0092899 Gsta4 protein_coding protein_coding MGP_C3HHeJ_T0099733.1 MGP_C3HHeJ_G0037927.1 mouse_genomes_project 9 108848031 108848130 + Gm23856 snRNA snRNA MGP_C3HHeJ_T0094641.1 MGP_C3HHeJ_G0035062.1 mouse_genomes_project 9 115075446 115133074 - MGP_C3HHeJ_P0094641 Pdcd6ip protein_coding protein_coding MGP_C3HHeJ_T0094642.1 MGP_C3HHeJ_G0035062.1 mouse_genomes_project 9 115078174 115133059 - MGP_C3HHeJ_P0094642 Pdcd6ip protein_coding protein_coding MGP_C3HHeJ_T0094643.1 MGP_C3HHeJ_G0035062.1 mouse_genomes_project 9 115079268 115080993 - Pdcd6ip protein_coding retained_intron MGP_C3HHeJ_T0094644.1 MGP_C3HHeJ_G0035062.1 mouse_genomes_project 9 115083333 115086113 - Pdcd6ip protein_coding retained_intron MGP_C3HHeJ_T0094645.1 MGP_C3HHeJ_G0035062.1 mouse_genomes_project 9 115098133 115109117 - Pdcd6ip protein_coding processed_transcript MGP_C3HHeJ_T0094646.1 MGP_C3HHeJ_G0035062.1 mouse_genomes_project 9 115111214 115122420 - Pdcd6ip protein_coding retained_intron MGP_C3HHeJ_T0093243.1 MGP_C3HHeJ_G0034819.1 mouse_genomes_project 9 96030393 96038758 + MGP_C3HHeJ_P0093243 Paqr9 protein_coding protein_coding MGP_C3HHeJ_T0091146.1 MGP_C3HHeJ_G0034190.1 mouse_genomes_project 9 25184177 25189063 + MGP_C3HHeJ_P0091146 Spata19 protein_coding protein_coding MGP_C3HHeJ_T0094099.1 MGP_C3HHeJ_G0034973.1 mouse_genomes_project 9 109252423 109257093 + Amt protein_coding processed_transcript MGP_C3HHeJ_T0094100.1 MGP_C3HHeJ_G0034973.1 mouse_genomes_project 9 109252440 109257807 + MGP_C3HHeJ_P0094100 Amt protein_coding protein_coding MGP_C3HHeJ_T0094101.1 MGP_C3HHeJ_G0034973.1 mouse_genomes_project 9 109252480 109253102 + Amt protein_coding retained_intron MGP_C3HHeJ_T0094102.1 MGP_C3HHeJ_G0034973.1 mouse_genomes_project 9 109252492 109255014 + Amt protein_coding retained_intron MGP_C3HHeJ_T0015855.1 MGP_C3HHeJ_G0013959.1 mouse_genomes_project 9 72006108 72006724 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093754.1 MGP_C3HHeJ_G0034920.1 mouse_genomes_project 9 107408088 107450919 - Iqcf3 protein_coding processed_transcript MGP_C3HHeJ_T0093756.1 MGP_C3HHeJ_G0034920.1 mouse_genomes_project 9 107449615 107470010 - MGP_C3HHeJ_P0093756 Iqcf3 protein_coding protein_coding MGP_C3HHeJ_T0093757.1 MGP_C3HHeJ_G0034920.1 mouse_genomes_project 9 107450024 107470008 - MGP_C3HHeJ_P0093757 Iqcf3 protein_coding protein_coding MGP_C3HHeJ_T0093758.1 MGP_C3HHeJ_G0034920.1 mouse_genomes_project 9 107459362 107469978 - MGP_C3HHeJ_P0093758 Iqcf3 protein_coding protein_coding MGP_C3HHeJ_T0093759.1 MGP_C3HHeJ_G0034920.1 mouse_genomes_project 9 107461718 107469978 - MGP_C3HHeJ_P0093759 Iqcf3 protein_coding protein_coding MGP_C3HHeJ_T0005460.1 MGP_C3HHeJ_G0004599.1 mouse_genomes_project 9 108346990 108353717 - Gm17141 antisense antisense MGP_C3HHeJ_T0092421.1 MGP_C3HHeJ_G0034632.1 mouse_genomes_project 9 64623546 64659948 + MGP_C3HHeJ_P0092421 Igdcc4 protein_coding protein_coding MGP_C3HHeJ_T0092422.1 MGP_C3HHeJ_G0034632.1 mouse_genomes_project 9 64623595 64657588 + MGP_C3HHeJ_P0092422 Igdcc4 protein_coding protein_coding MGP_C3HHeJ_T0091978.1 MGP_C3HHeJ_G0034507.1 mouse_genomes_project 9 53514208 53520244 + MGP_C3HHeJ_P0091978 Sh2d7 protein_coding protein_coding MGP_C3HHeJ_T0091979.1 MGP_C3HHeJ_G0034507.1 mouse_genomes_project 9 53514212 53518878 + MGP_C3HHeJ_P0091979 Sh2d7 protein_coding protein_coding MGP_C3HHeJ_T0094018.1 MGP_C3HHeJ_G0034960.1 mouse_genomes_project 9 108925579 108937200 + Gm20661 protein_coding retained_intron MGP_C3HHeJ_T0094019.1 MGP_C3HHeJ_G0034960.1 mouse_genomes_project 9 108925614 108936234 + Gm20661 protein_coding retained_intron MGP_C3HHeJ_T0094020.1 MGP_C3HHeJ_G0034960.1 mouse_genomes_project 9 108925808 108936755 + MGP_C3HHeJ_P0094020 Gm20661 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099710.1 MGP_C3HHeJ_G0037904.1 mouse_genomes_project 9 72051495 72051599 - Gm25163 snRNA snRNA MGP_C3HHeJ_T0093147.1 MGP_C3HHeJ_G0034798.1 mouse_genomes_project 9 89486979 89502995 + MGP_C3HHeJ_P0093147 protein_coding protein_coding MGP_C3HHeJ_T0100940.1 MGP_C3HHeJ_G0039134.1 mouse_genomes_project 9 12564553 12564676 + Gm25500 snoRNA snoRNA MGP_C3HHeJ_T0005408.1 MGP_C3HHeJ_G0004565.1 mouse_genomes_project 9 78724458 78725211 - 4921509A06Rik antisense antisense MGP_C3HHeJ_T0093183.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90476895 90515126 + MGP_C3HHeJ_P0093183 Adamts7 protein_coding protein_coding MGP_C3HHeJ_T0093184.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90476904 90523096 + MGP_C3HHeJ_P0093184 Adamts7 protein_coding protein_coding MGP_C3HHeJ_T0093185.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90476950 90515126 + MGP_C3HHeJ_P0093185 Adamts7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093186.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90477028 90515016 + MGP_C3HHeJ_P0093186 Adamts7 protein_coding protein_coding MGP_C3HHeJ_T0093187.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90477052 90515128 + MGP_C3HHeJ_P0093187 Adamts7 protein_coding protein_coding MGP_C3HHeJ_T0093188.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90503681 90506592 + Adamts7 protein_coding retained_intron MGP_C3HHeJ_T0093189.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90506010 90508514 + Adamts7 protein_coding processed_transcript MGP_C3HHeJ_T0093190.1 MGP_C3HHeJ_G0034805.1 mouse_genomes_project 9 90510154 90515123 + Adamts7 protein_coding retained_intron MGP_C3HHeJ_T0092381.1 MGP_C3HHeJ_G0034620.1 mouse_genomes_project 9 63657560 63660948 + MGP_C3HHeJ_P0092381 Snapc5 protein_coding protein_coding MGP_C3HHeJ_T0002420.1 MGP_C3HHeJ_G0002338.1 mouse_genomes_project 9 109140552 109141282 - TEC TEC MGP_C3HHeJ_T0092621.1 MGP_C3HHeJ_G0034681.1 mouse_genomes_project 9 70167165 70182739 - MGP_C3HHeJ_P0092621 Ccnb2 protein_coding protein_coding MGP_C3HHeJ_T0009195.1 MGP_C3HHeJ_G0007384.1 mouse_genomes_project 9 81592364 81598675 + Gm27226 lincRNA lincRNA MGP_C3HHeJ_T0091472.1 MGP_C3HHeJ_G0034344.1 mouse_genomes_project 9 38533785 38534901 - MGP_C3HHeJ_P0091472 Olfr985 protein_coding protein_coding MGP_C3HHeJ_T0091051.1 MGP_C3HHeJ_G0034150.1 mouse_genomes_project 9 19521140 19523658 + MGP_C3HHeJ_P0091051 Swsap1 protein_coding protein_coding MGP_C3HHeJ_T0009164.1 MGP_C3HHeJ_G0007359.1 mouse_genomes_project 9 57653891 57669391 + 4930461G14Rik lincRNA lincRNA MGP_C3HHeJ_T0099709.1 MGP_C3HHeJ_G0037903.1 mouse_genomes_project 9 71916592 71916691 - Gm25045 snRNA snRNA MGP_C3HHeJ_T0092834.1 MGP_C3HHeJ_G0034726.1 mouse_genomes_project 9 75534262 75595024 - MGP_C3HHeJ_P0092834 Scg3 protein_coding protein_coding MGP_C3HHeJ_T0092835.1 MGP_C3HHeJ_G0034726.1 mouse_genomes_project 9 75534824 75595113 - MGP_C3HHeJ_P0092835 Scg3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091294.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34874957 34892982 - MGP_C3HHeJ_P0091294 Chek1 protein_coding protein_coding MGP_C3HHeJ_T0091295.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34874957 34893266 - MGP_C3HHeJ_P0091295 Chek1 protein_coding protein_coding MGP_C3HHeJ_T0091296.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34875903 34893193 - MGP_C3HHeJ_P0091296 Chek1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091297.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34876620 34892476 - MGP_C3HHeJ_P0091297 Chek1 protein_coding protein_coding MGP_C3HHeJ_T0091298.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34876620 34892476 - MGP_C3HHeJ_P0091298 Chek1 protein_coding protein_coding MGP_C3HHeJ_T0091299.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34880220 34889297 - Chek1 protein_coding retained_intron MGP_C3HHeJ_T0091300.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34889200 34893673 - Chek1 protein_coding processed_transcript MGP_C3HHeJ_T0091301.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34890154 34893178 - Chek1 protein_coding retained_intron MGP_C3HHeJ_T0091302.1 MGP_C3HHeJ_G0034237.1 mouse_genomes_project 9 34890413 34893059 - MGP_C3HHeJ_P0091302 Chek1 protein_coding protein_coding MGP_C3HHeJ_T0002398.1 MGP_C3HHeJ_G0002316.1 mouse_genomes_project 9 101875921 101878617 - TEC TEC MGP_C3HHeJ_T0092338.1 MGP_C3HHeJ_G0034610.1 mouse_genomes_project 9 62570705 62579559 - MGP_C3HHeJ_P0092338 Skor1 protein_coding protein_coding MGP_C3HHeJ_T0092339.1 MGP_C3HHeJ_G0034610.1 mouse_genomes_project 9 62570711 62579528 - MGP_C3HHeJ_P0092339 Skor1 protein_coding protein_coding MGP_C3HHeJ_T0092340.1 MGP_C3HHeJ_G0034610.1 mouse_genomes_project 9 62571406 62579940 - MGP_C3HHeJ_P0092340 Skor1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091684.1 MGP_C3HHeJ_G0034411.1 mouse_genomes_project 9 43706490 43730590 + MGP_C3HHeJ_P0091684 Mpzl3 protein_coding protein_coding MGP_C3HHeJ_T0091685.1 MGP_C3HHeJ_G0034411.1 mouse_genomes_project 9 43706492 43716471 + Mpzl3 protein_coding retained_intron MGP_C3HHeJ_T0091686.1 MGP_C3HHeJ_G0034411.1 mouse_genomes_project 9 43706513 43719629 + MGP_C3HHeJ_P0091686 Mpzl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091687.1 MGP_C3HHeJ_G0034411.1 mouse_genomes_project 9 43710550 43716955 + Mpzl3 protein_coding retained_intron MGP_C3HHeJ_T0091688.1 MGP_C3HHeJ_G0034411.1 mouse_genomes_project 9 43723768 43728314 + Mpzl3 protein_coding retained_intron MGP_C3HHeJ_T0092647.1 MGP_C3HHeJ_G0034690.1 mouse_genomes_project 9 71257241 71264573 - MGP_C3HHeJ_P0092647 Polr2m protein_coding protein_coding MGP_C3HHeJ_T0092652.1 MGP_C3HHeJ_G0034690.1 mouse_genomes_project 9 71260250 71264687 - MGP_C3HHeJ_P0092652 Polr2m protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094832.1 MGP_C3HHeJ_G0035126.1 mouse_genomes_project 9 123333939 123339798 - MGP_C3HHeJ_P0094832 Cck protein_coding protein_coding MGP_C3HHeJ_T0092419.1 MGP_C3HHeJ_G0034631.1 mouse_genomes_project 9 64551077 64604271 + MGP_C3HHeJ_P0092419 Dpp8 protein_coding protein_coding MGP_C3HHeJ_T0092420.1 MGP_C3HHeJ_G0034631.1 mouse_genomes_project 9 64551341 64602611 + MGP_C3HHeJ_P0092420 Dpp8 protein_coding protein_coding MGP_C3HHeJ_T0093246.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96181405 96227422 - MGP_C3HHeJ_P0093246 Trpc1 protein_coding protein_coding MGP_C3HHeJ_T0093247.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96182950 96227422 - MGP_C3HHeJ_P0093247 Trpc1 protein_coding protein_coding MGP_C3HHeJ_T0093248.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96182950 96227422 - MGP_C3HHeJ_P0093248 Trpc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093249.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96182950 96227422 - MGP_C3HHeJ_P0093249 Trpc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093250.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96192580 96195688 - Trpc1 protein_coding retained_intron MGP_C3HHeJ_T0093251.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96198268 96209260 - MGP_C3HHeJ_P0093251 Trpc1 protein_coding protein_coding MGP_C3HHeJ_T0093252.1 MGP_C3HHeJ_G0034821.1 mouse_genomes_project 9 96226101 96227439 - Trpc1 protein_coding retained_intron MGP_C3HHeJ_T0002432.1 MGP_C3HHeJ_G0002350.1 mouse_genomes_project 9 111810114 111812201 + TEC TEC MGP_C3HHeJ_T0092653.1 MGP_C3HHeJ_G0034692.1 mouse_genomes_project 9 71283587 71373855 - Myzap protein_coding retained_intron MGP_C3HHeJ_T0092654.1 MGP_C3HHeJ_G0034692.1 mouse_genomes_project 9 71283587 71373855 - MGP_C3HHeJ_P0092654 Myzap protein_coding protein_coding MGP_C3HHeJ_T0092655.1 MGP_C3HHeJ_G0034692.1 mouse_genomes_project 9 71284299 71373760 - MGP_C3HHeJ_P0092655 Myzap protein_coding protein_coding MGP_C3HHeJ_T0092656.1 MGP_C3HHeJ_G0034692.1 mouse_genomes_project 9 71342364 71361399 - MGP_C3HHeJ_P0092656 Myzap protein_coding protein_coding MGP_C3HHeJ_T0092657.1 MGP_C3HHeJ_G0034692.1 mouse_genomes_project 9 71345956 71373837 - MGP_C3HHeJ_P0092657 Myzap protein_coding protein_coding MGP_C3HHeJ_T0090737.1 MGP_C3HHeJ_G0034024.1 mouse_genomes_project 9 10477973 10516792 + MGP_C3HHeJ_P0090737 Ccdc82 protein_coding protein_coding MGP_C3HHeJ_T0090738.1 MGP_C3HHeJ_G0034024.1 mouse_genomes_project 9 10477986 10484544 + MGP_C3HHeJ_P0090738 Ccdc82 protein_coding protein_coding MGP_C3HHeJ_T0090808.1 MGP_C3HHeJ_G0034046.1 mouse_genomes_project 9 12533426 12553667 - MGP_C3HHeJ_P0090808 4931406C07Rik protein_coding protein_coding MGP_C3HHeJ_T0090809.1 MGP_C3HHeJ_G0034046.1 mouse_genomes_project 9 12533426 12558450 - MGP_C3HHeJ_P0090809 4931406C07Rik protein_coding protein_coding MGP_C3HHeJ_T0090810.1 MGP_C3HHeJ_G0034046.1 mouse_genomes_project 9 12533426 12558169 - MGP_C3HHeJ_P0090810 4931406C07Rik protein_coding protein_coding MGP_C3HHeJ_T0094529.1 MGP_C3HHeJ_G0035043.1 mouse_genomes_project 9 112114542 112122908 + MGP_C3HHeJ_P0094529 Prss45 protein_coding protein_coding MGP_C3HHeJ_T0094530.1 MGP_C3HHeJ_G0035043.1 mouse_genomes_project 9 112114542 112122905 + MGP_C3HHeJ_P0094530 Prss45 protein_coding protein_coding MGP_C3HHeJ_T0094956.1 MGP_C3HHeJ_G0035167.1 mouse_genomes_project 9 125708286 125773244 - MGP_C3HHeJ_P0094956 Fyco1 protein_coding protein_coding MGP_C3HHeJ_T0094957.1 MGP_C3HHeJ_G0035167.1 mouse_genomes_project 9 125708662 125772911 - MGP_C3HHeJ_P0094957 Fyco1 protein_coding protein_coding MGP_C3HHeJ_T0094959.1 MGP_C3HHeJ_G0035167.1 mouse_genomes_project 9 125751357 125773226 - MGP_C3HHeJ_P0094959 Fyco1 protein_coding protein_coding MGP_C3HHeJ_T0094960.1 MGP_C3HHeJ_G0035167.1 mouse_genomes_project 9 125759526 125773231 - Fyco1 protein_coding retained_intron MGP_C3HHeJ_T0009175.1 MGP_C3HHeJ_G0007366.1 mouse_genomes_project 9 67898100 67898472 + Gm28195 lincRNA lincRNA MGP_C3HHeJ_T0015815.1 MGP_C3HHeJ_G0013919.1 mouse_genomes_project 9 10082809 10083794 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092926.1 MGP_C3HHeJ_G0034753.1 mouse_genomes_project 9 78640555 78683319 - MGP_C3HHeJ_P0092926 Slc17a5 protein_coding protein_coding MGP_C3HHeJ_T0092927.1 MGP_C3HHeJ_G0034753.1 mouse_genomes_project 9 78640573 78683293 - MGP_C3HHeJ_P0092927 Slc17a5 protein_coding protein_coding MGP_C3HHeJ_T0092928.1 MGP_C3HHeJ_G0034753.1 mouse_genomes_project 9 78665092 78683305 - MGP_C3HHeJ_P0092928 Slc17a5 protein_coding protein_coding MGP_C3HHeJ_T0094302.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949666 109994078 + MGP_C3HHeJ_P0094302 Pfkfb4 protein_coding protein_coding MGP_C3HHeJ_T0094303.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949790 109994078 + MGP_C3HHeJ_P0094303 Pfkfb4 protein_coding protein_coding MGP_C3HHeJ_T0094304.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949836 109957158 + Pfkfb4 protein_coding retained_intron MGP_C3HHeJ_T0094305.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949880 109950790 + Pfkfb4 protein_coding retained_intron MGP_C3HHeJ_T0094306.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949904 109992562 + Pfkfb4 protein_coding retained_intron MGP_C3HHeJ_T0094307.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949904 109992562 + MGP_C3HHeJ_P0094307 Pfkfb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094308.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109949904 109992562 + MGP_C3HHeJ_P0094308 Pfkfb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094309.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109956776 109970757 + Pfkfb4 protein_coding processed_transcript MGP_C3HHeJ_T0094310.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109971286 109990745 + MGP_C3HHeJ_P0094310 Pfkfb4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094311.1 MGP_C3HHeJ_G0035003.1 mouse_genomes_project 9 109979468 109994047 + Pfkfb4 protein_coding processed_transcript MGP_C3HHeJ_T0015907.1 MGP_C3HHeJ_G0014011.1 mouse_genomes_project 9 92726385 92726913 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092352.1 MGP_C3HHeJ_G0034614.1 mouse_genomes_project 9 63050292 63089633 + MGP_C3HHeJ_P0092352 Aagab protein_coding protein_coding MGP_C3HHeJ_T0091939.1 MGP_C3HHeJ_G0034494.1 mouse_genomes_project 9 52391689 52493309 - MGP_C3HHeJ_P0091939 Atm protein_coding protein_coding MGP_C3HHeJ_T0091940.1 MGP_C3HHeJ_G0034494.1 mouse_genomes_project 9 52392284 52493283 - MGP_C3HHeJ_P0091940 Atm protein_coding unknown_likely_coding MGP_C3HHeJ_T0091941.1 MGP_C3HHeJ_G0034494.1 mouse_genomes_project 9 52392643 52395101 - Atm protein_coding retained_intron MGP_C3HHeJ_T0091942.1 MGP_C3HHeJ_G0034494.1 mouse_genomes_project 9 52397915 52406164 - MGP_C3HHeJ_P0091942 Atm protein_coding protein_coding MGP_C3HHeJ_T0091943.1 MGP_C3HHeJ_G0034494.1 mouse_genomes_project 9 52477169 52493242 - Atm protein_coding retained_intron MGP_C3HHeJ_T0091944.1 MGP_C3HHeJ_G0034494.1 mouse_genomes_project 9 52482517 52493177 - MGP_C3HHeJ_P0091944 Atm protein_coding protein_coding MGP_C3HHeJ_T0090686.1 MGP_C3HHeJ_G0034005.1 mouse_genomes_project 9 4496437 4512967 + MGP_C3HHeJ_P0090686 protein_coding protein_coding MGP_C3HHeJ_T0091436.1 MGP_C3HHeJ_G0034314.1 mouse_genomes_project 9 37666989 37667955 - MGP_C3HHeJ_P0091436 Olfr948 protein_coding protein_coding MGP_C3HHeJ_T0015922.1 MGP_C3HHeJ_G0014026.1 mouse_genomes_project 9 97553894 97554195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002348.1 MGP_C3HHeJ_G0002267.1 mouse_genomes_project 9 73700724 73703796 - TEC TEC MGP_C3HHeJ_T0090968.1 MGP_C3HHeJ_G0034123.1 mouse_genomes_project 9 18652549 18663915 - MGP_C3HHeJ_P0090968 Cdc37 protein_coding protein_coding MGP_C3HHeJ_T0091681.1 MGP_C3HHeJ_G0034408.1 mouse_genomes_project 9 43623509 43628971 + MGP_C3HHeJ_P0091681 Cd3d protein_coding protein_coding MGP_C3HHeJ_T0092636.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70883735 70941123 - MGP_C3HHeJ_P0092636 Aqp9 protein_coding protein_coding MGP_C3HHeJ_T0092637.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70883737 70941094 - MGP_C3HHeJ_P0092637 Aqp9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092638.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70883738 70940467 - MGP_C3HHeJ_P0092638 Aqp9 protein_coding protein_coding MGP_C3HHeJ_T0092639.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70884920 70947021 - MGP_C3HHeJ_P0092639 Aqp9 protein_coding protein_coding MGP_C3HHeJ_T0092640.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70940806 70943585 - Aqp9 protein_coding processed_transcript MGP_C3HHeJ_T0092641.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70940862 70946257 - Aqp9 protein_coding processed_transcript MGP_C3HHeJ_T0092642.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70941308 70947046 - Aqp9 protein_coding processed_transcript MGP_C3HHeJ_T0092643.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70941308 70945997 - Aqp9 protein_coding processed_transcript MGP_C3HHeJ_T0092644.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70941309 70947041 - Aqp9 protein_coding processed_transcript MGP_C3HHeJ_T0092645.1 MGP_C3HHeJ_G0034688.1 mouse_genomes_project 9 70943499 70946213 - Aqp9 protein_coding processed_transcript MGP_C3HHeJ_T0100969.1 MGP_C3HHeJ_G0039163.1 mouse_genomes_project 9 51228458 51228591 + Gm25562 snoRNA snoRNA MGP_C3HHeJ_T0090893.1 MGP_C3HHeJ_G0034098.1 mouse_genomes_project 9 17819253 17858330 - MGP_C3HHeJ_P0090893 Zfp560 protein_coding protein_coding MGP_C3HHeJ_T0090894.1 MGP_C3HHeJ_G0034098.1 mouse_genomes_project 9 17828220 17858330 - Zfp560 protein_coding retained_intron MGP_C3HHeJ_T0092223.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58662297 58761063 - MGP_C3HHeJ_P0092223 Arih1 protein_coding protein_coding MGP_C3HHeJ_T0092224.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58667152 58761067 - MGP_C3HHeJ_P0092224 Arih1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092225.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58667333 58760796 - MGP_C3HHeJ_P0092225 Arih1 protein_coding protein_coding MGP_C3HHeJ_T0092226.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58668911 58679820 - MGP_C3HHeJ_P0092226 Arih1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092227.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58668996 58680073 - Arih1 protein_coding retained_intron MGP_C3HHeJ_T0092228.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58699705 58760505 - Arih1 protein_coding retained_intron MGP_C3HHeJ_T0092229.1 MGP_C3HHeJ_G0034582.1 mouse_genomes_project 9 58710967 58760532 - Arih1 protein_coding retained_intron MGP_C3HHeJ_T0002323.1 MGP_C3HHeJ_G0002242.1 mouse_genomes_project 9 57757357 57758388 + TEC TEC MGP_C3HHeJ_T0091432.1 MGP_C3HHeJ_G0034310.1 mouse_genomes_project 9 37507256 37526963 + MGP_C3HHeJ_P0091432 Olfr943 protein_coding protein_coding MGP_C3HHeJ_T0094355.1 MGP_C3HHeJ_G0035012.1 mouse_genomes_project 9 110148097 110165288 - MGP_C3HHeJ_P0094355 Fbxw13 protein_coding protein_coding MGP_C3HHeJ_T0094356.1 MGP_C3HHeJ_G0035012.1 mouse_genomes_project 9 110148118 110165275 - MGP_C3HHeJ_P0094356 Fbxw13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094357.1 MGP_C3HHeJ_G0035012.1 mouse_genomes_project 9 110150395 110164833 - MGP_C3HHeJ_P0094357 Fbxw13 protein_coding protein_coding MGP_C3HHeJ_T0090770.1 MGP_C3HHeJ_G0034032.1 mouse_genomes_project 9 11653873 11701771 - MGP_C3HHeJ_P0090770 Kdm4d protein_coding protein_coding MGP_C3HHeJ_T0090771.1 MGP_C3HHeJ_G0034032.1 mouse_genomes_project 9 11658280 11701689 - MGP_C3HHeJ_P0090771 Kdm4d protein_coding protein_coding MGP_C3HHeJ_T0015908.1 MGP_C3HHeJ_G0014012.1 mouse_genomes_project 9 92933663 92933811 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009153.1 MGP_C3HHeJ_G0007350.1 mouse_genomes_project 9 45647366 45664735 + 2900052N01Rik lincRNA lincRNA MGP_C3HHeJ_T0009154.1 MGP_C3HHeJ_G0007350.1 mouse_genomes_project 9 45647476 45664735 + 2900052N01Rik lincRNA lincRNA MGP_C3HHeJ_T0009155.1 MGP_C3HHeJ_G0007350.1 mouse_genomes_project 9 45647500 45659926 + 2900052N01Rik lincRNA lincRNA MGP_C3HHeJ_T0015834.1 MGP_C3HHeJ_G0013938.1 mouse_genomes_project 9 40166763 40167731 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005471.1 MGP_C3HHeJ_G0004607.1 mouse_genomes_project 9 108940308 108944601 - 4930535L15Rik antisense antisense MGP_C3HHeJ_T0011003.1 MGP_C3HHeJ_G0009136.1 mouse_genomes_project 9 107045240 107045330 + Mir135a-1 miRNA miRNA MGP_C3HHeJ_T0092512.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66127932 66211002 - MGP_C3HHeJ_P0092512 Usp3 protein_coding protein_coding MGP_C3HHeJ_T0092513.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66131648 66210734 - MGP_C3HHeJ_P0092513 Usp3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092514.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66131656 66210860 - MGP_C3HHeJ_P0092514 Usp3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092515.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66132649 66210896 - MGP_C3HHeJ_P0092515 Usp3 protein_coding protein_coding MGP_C3HHeJ_T0092516.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66133299 66210818 - Usp3 protein_coding retained_intron MGP_C3HHeJ_T0092517.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66133497 66210866 - MGP_C3HHeJ_P0092517 Usp3 protein_coding protein_coding MGP_C3HHeJ_T0092518.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66133671 66135762 - Usp3 protein_coding retained_intron MGP_C3HHeJ_T0092519.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66133830 66136776 - Usp3 protein_coding retained_intron MGP_C3HHeJ_T0092520.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66142654 66146396 - Usp3 protein_coding retained_intron MGP_C3HHeJ_T0092521.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66142969 66157433 - Usp3 protein_coding processed_transcript MGP_C3HHeJ_T0092522.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66162544 66183750 - Usp3 protein_coding retained_intron MGP_C3HHeJ_T0092523.1 MGP_C3HHeJ_G0034659.1 mouse_genomes_project 9 66164949 66192888 - Usp3 protein_coding processed_transcript MGP_C3HHeJ_T0094877.1 MGP_C3HHeJ_G0035140.1 mouse_genomes_project 9 123822564 123850615 + MGP_C3HHeJ_P0094877 Fam198a protein_coding protein_coding MGP_C3HHeJ_T0094240.1 MGP_C3HHeJ_G0034994.1 mouse_genomes_project 9 109686120 109728534 + MGP_C3HHeJ_P0094240 Prkar2a protein_coding protein_coding MGP_C3HHeJ_T0094241.1 MGP_C3HHeJ_G0034994.1 mouse_genomes_project 9 109688943 109750246 + MGP_C3HHeJ_P0094241 Prkar2a protein_coding protein_coding MGP_C3HHeJ_T0094242.1 MGP_C3HHeJ_G0034994.1 mouse_genomes_project 9 109689257 109746805 + MGP_C3HHeJ_P0094242 Prkar2a protein_coding protein_coding MGP_C3HHeJ_T0094243.1 MGP_C3HHeJ_G0034994.1 mouse_genomes_project 9 109717203 109744126 + MGP_C3HHeJ_P0094243 Prkar2a protein_coding protein_coding MGP_C3HHeJ_T0094244.1 MGP_C3HHeJ_G0034994.1 mouse_genomes_project 9 109739874 109741201 + Prkar2a protein_coding retained_intron MGP_C3HHeJ_T0094245.1 MGP_C3HHeJ_G0034994.1 mouse_genomes_project 9 109748055 109749314 + Prkar2a protein_coding processed_transcript MGP_C3HHeJ_T0091096.1 MGP_C3HHeJ_G0034171.1 mouse_genomes_project 9 20880082 21137581 + MGP_C3HHeJ_P0091096 Bmper protein_coding protein_coding MGP_C3HHeJ_T0015856.1 MGP_C3HHeJ_G0013960.1 mouse_genomes_project 9 72085792 72086237 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002320.1 MGP_C3HHeJ_G0002239.1 mouse_genomes_project 9 33854583 33855656 + TEC TEC MGP_C3HHeJ_T0010970.1 MGP_C3HHeJ_G0009103.1 mouse_genomes_project 9 42947258 42947399 - Gm44335 miRNA miRNA MGP_C3HHeJ_T0090859.1 MGP_C3HHeJ_G0034064.1 mouse_genomes_project 9 16174488 16175427 - MGP_C3HHeJ_P0090859 Olfr828 protein_coding protein_coding MGP_C3HHeJ_T0015925.1 MGP_C3HHeJ_G0014029.1 mouse_genomes_project 9 98846372 98846949 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093428.1 MGP_C3HHeJ_G0034861.1 mouse_genomes_project 9 101155387 101210260 - MGP_C3HHeJ_P0093428 Nck1 protein_coding protein_coding MGP_C3HHeJ_T0093429.1 MGP_C3HHeJ_G0034861.1 mouse_genomes_project 9 101158095 101169873 - MGP_C3HHeJ_P0093429 Nck1 protein_coding protein_coding MGP_C3HHeJ_T0093430.1 MGP_C3HHeJ_G0034861.1 mouse_genomes_project 9 101160673 101210248 - MGP_C3HHeJ_P0093430 Nck1 protein_coding protein_coding MGP_C3HHeJ_T0093431.1 MGP_C3HHeJ_G0034861.1 mouse_genomes_project 9 101160896 101209857 - MGP_C3HHeJ_P0093431 Nck1 protein_coding protein_coding MGP_C3HHeJ_T0091715.1 MGP_C3HHeJ_G0034424.1 mouse_genomes_project 9 44523965 44549743 + MGP_C3HHeJ_P0091715 Bace1 protein_coding protein_coding MGP_C3HHeJ_T0091716.1 MGP_C3HHeJ_G0034424.1 mouse_genomes_project 9 44523965 44547850 + MGP_C3HHeJ_P0091716 Bace1 protein_coding protein_coding MGP_C3HHeJ_T0091717.1 MGP_C3HHeJ_G0034424.1 mouse_genomes_project 9 44524625 44542551 + MGP_C3HHeJ_P0091717 Bace1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091718.1 MGP_C3HHeJ_G0034424.1 mouse_genomes_project 9 44525300 44540093 + Bace1 protein_coding processed_transcript MGP_C3HHeJ_T0091719.1 MGP_C3HHeJ_G0034424.1 mouse_genomes_project 9 44538108 44547593 + Bace1 protein_coding retained_intron MGP_C3HHeJ_T0091720.1 MGP_C3HHeJ_G0034424.1 mouse_genomes_project 9 44540012 44545736 + MGP_C3HHeJ_P0091720 Bace1 protein_coding protein_coding MGP_C3HHeJ_T0009205.1 MGP_C3HHeJ_G0007392.1 mouse_genomes_project 9 90114040 90153693 + 4930524O08Rik lincRNA lincRNA MGP_C3HHeJ_T0009206.1 MGP_C3HHeJ_G0007392.1 mouse_genomes_project 9 90114465 90126521 + 4930524O08Rik lincRNA lincRNA MGP_C3HHeJ_T0009207.1 MGP_C3HHeJ_G0007392.1 mouse_genomes_project 9 90114503 90125863 + 4930524O08Rik lincRNA lincRNA MGP_C3HHeJ_T0005346.1 MGP_C3HHeJ_G0004522.1 mouse_genomes_project 9 18603507 18642452 + 1700084C06Rik antisense antisense MGP_C3HHeJ_T0090942.1 MGP_C3HHeJ_G0034108.1 mouse_genomes_project 9 18320139 18327799 + MGP_C3HHeJ_P0090942 Rdh8 protein_coding protein_coding MGP_C3HHeJ_T0094103.1 MGP_C3HHeJ_G0034974.1 mouse_genomes_project 9 109258462 109261519 - MGP_C3HHeJ_P0094103 Tcta protein_coding protein_coding MGP_C3HHeJ_T0094104.1 MGP_C3HHeJ_G0034974.1 mouse_genomes_project 9 109259158 109261689 - MGP_C3HHeJ_P0094104 Tcta protein_coding protein_coding MGP_C3HHeJ_T0094105.1 MGP_C3HHeJ_G0034974.1 mouse_genomes_project 9 109259394 109261477 - MGP_C3HHeJ_P0094105 Tcta protein_coding protein_coding MGP_C3HHeJ_T0092311.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61733075 61769053 + Anp32a protein_coding processed_transcript MGP_C3HHeJ_T0092312.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61733111 61770231 + MGP_C3HHeJ_P0092312 Anp32a protein_coding protein_coding MGP_C3HHeJ_T0092313.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61733683 61766082 + MGP_C3HHeJ_P0092313 Anp32a protein_coding protein_coding MGP_C3HHeJ_T0092314.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61733856 61769024 + MGP_C3HHeJ_P0092314 Anp32a protein_coding protein_coding MGP_C3HHeJ_T0092315.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61734245 61764948 + MGP_C3HHeJ_P0092315 Anp32a protein_coding protein_coding MGP_C3HHeJ_T0092316.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61735844 61764961 + Anp32a protein_coding processed_transcript MGP_C3HHeJ_T0092317.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61736575 61766079 + Anp32a protein_coding processed_transcript MGP_C3HHeJ_T0092318.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61758343 61765041 + Anp32a protein_coding processed_transcript MGP_C3HHeJ_T0092319.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61758349 61768659 + Anp32a protein_coding processed_transcript MGP_C3HHeJ_T0092320.1 MGP_C3HHeJ_G0034603.1 mouse_genomes_project 9 61764803 61769199 + Anp32a protein_coding retained_intron MGP_C3HHeJ_T0015854.1 MGP_C3HHeJ_G0013958.1 mouse_genomes_project 9 71969126 71969505 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090862.1 MGP_C3HHeJ_G0034067.1 mouse_genomes_project 9 16297080 16310532 - MGP_C3HHeJ_P0090862 protein_coding protein_coding MGP_C3HHeJ_T0009146.1 MGP_C3HHeJ_G0007344.1 mouse_genomes_project 9 42035541 42036437 + Gm28215 lincRNA lincRNA MGP_C3HHeJ_T0094845.1 MGP_C3HHeJ_G0035130.1 mouse_genomes_project 9 123569104 123571637 + MGP_C3HHeJ_P0094845 Deb1 protein_coding protein_coding MGP_C3HHeJ_T0094965.1 MGP_C3HHeJ_G0035173.1 mouse_genomes_project 9 126036318 126047918 + MGP_C3HHeJ_P0094965 Ccr2 protein_coding protein_coding MGP_C3HHeJ_T0094966.1 MGP_C3HHeJ_G0035173.1 mouse_genomes_project 9 126036536 126043501 + MGP_C3HHeJ_P0094966 Ccr2 protein_coding protein_coding MGP_C3HHeJ_T0094967.1 MGP_C3HHeJ_G0035173.1 mouse_genomes_project 9 126036561 126042911 + MGP_C3HHeJ_P0094967 Ccr2 protein_coding protein_coding MGP_C3HHeJ_T0094968.1 MGP_C3HHeJ_G0035173.1 mouse_genomes_project 9 126039986 126043501 + MGP_C3HHeJ_P0094968 Ccr2 protein_coding protein_coding MGP_C3HHeJ_T0091855.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49544992 49583291 - MGP_C3HHeJ_P0091855 Dixdc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091856.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49544995 49614842 - MGP_C3HHeJ_P0091856 Dixdc1 protein_coding protein_coding MGP_C3HHeJ_T0091857.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49544999 49584721 - Dixdc1 protein_coding retained_intron MGP_C3HHeJ_T0091858.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49544999 49614934 - MGP_C3HHeJ_P0091858 Dixdc1 protein_coding protein_coding MGP_C3HHeJ_T0091859.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49548438 49581469 - Dixdc1 protein_coding processed_transcript MGP_C3HHeJ_T0091860.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49548438 49626384 - MGP_C3HHeJ_P0091860 Dixdc1 protein_coding protein_coding MGP_C3HHeJ_T0091861.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49548502 49566505 - Dixdc1 protein_coding retained_intron MGP_C3HHeJ_T0091862.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49558063 49578502 - MGP_C3HHeJ_P0091862 Dixdc1 protein_coding protein_coding MGP_C3HHeJ_T0091863.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49572025 49584796 - Dixdc1 protein_coding processed_transcript MGP_C3HHeJ_T0091864.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49578170 49583346 - Dixdc1 protein_coding retained_intron MGP_C3HHeJ_T0091865.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49578348 49582482 - Dixdc1 protein_coding processed_transcript MGP_C3HHeJ_T0091866.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49596523 49626314 - MGP_C3HHeJ_P0091866 Dixdc1 protein_coding protein_coding MGP_C3HHeJ_T0091867.1 MGP_C3HHeJ_G0034469.1 mouse_genomes_project 9 49597026 49614805 - MGP_C3HHeJ_P0091867 Dixdc1 protein_coding protein_coding MGP_C3HHeJ_T0018343.1 MGP_C3HHeJ_G0015514.1 mouse_genomes_project 9 99106799 99108163 - 4930579K19Rik processed_transcript lincRNA MGP_C3HHeJ_T0018344.1 MGP_C3HHeJ_G0015514.1 mouse_genomes_project 9 99107030 99108182 - 4930579K19Rik processed_transcript TEC MGP_C3HHeJ_T0018345.1 MGP_C3HHeJ_G0015514.1 mouse_genomes_project 9 99107530 99108182 - 4930579K19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0092828.1 MGP_C3HHeJ_G0034722.1 mouse_genomes_project 9 75321893 75349571 + MGP_C3HHeJ_P0092828 Leo1 protein_coding protein_coding MGP_C3HHeJ_T0092310.1 MGP_C3HHeJ_G0034602.1 mouse_genomes_project 9 61649686 61661113 - MGP_C3HHeJ_P0092310 Spesp1 protein_coding protein_coding MGP_C3HHeJ_T0090647.1 MGP_C3HHeJ_G0033992.1 mouse_genomes_project 9 1204434 1226726 + MGP_C3HHeJ_P0090647 Kbtbd3 protein_coding protein_coding MGP_C3HHeJ_T0092177.1 MGP_C3HHeJ_G0034569.1 mouse_genomes_project 9 57371700 57377684 - MGP_C3HHeJ_P0092177 Islr2 protein_coding protein_coding MGP_C3HHeJ_T0092178.1 MGP_C3HHeJ_G0034569.1 mouse_genomes_project 9 57371700 57379724 - MGP_C3HHeJ_P0092178 Islr2 protein_coding protein_coding MGP_C3HHeJ_T0092179.1 MGP_C3HHeJ_G0034569.1 mouse_genomes_project 9 57371700 57377933 - MGP_C3HHeJ_P0092179 Islr2 protein_coding protein_coding MGP_C3HHeJ_T0092180.1 MGP_C3HHeJ_G0034569.1 mouse_genomes_project 9 57371700 57377198 - MGP_C3HHeJ_P0092180 Islr2 protein_coding protein_coding MGP_C3HHeJ_T0092181.1 MGP_C3HHeJ_G0034569.1 mouse_genomes_project 9 57371700 57377118 - MGP_C3HHeJ_P0092181 Islr2 protein_coding protein_coding MGP_C3HHeJ_T0097946.1 MGP_C3HHeJ_G0036158.1 mouse_genomes_project 9 36476688 36477615 + pseudogene pseudogene MGP_C3HHeJ_T0091107.1 MGP_C3HHeJ_G0034174.1 mouse_genomes_project 9 22216377 22358416 - MGP_C3HHeJ_P0091107 Dpy19l2 protein_coding protein_coding MGP_C3HHeJ_T0090773.1 MGP_C3HHeJ_G0034034.1 mouse_genomes_project 9 11745131 11818709 - MGP_C3HHeJ_P0090773 Amotl1 protein_coding protein_coding MGP_C3HHeJ_T0090774.1 MGP_C3HHeJ_G0034034.1 mouse_genomes_project 9 11750957 11838923 - MGP_C3HHeJ_P0090774 Amotl1 protein_coding protein_coding MGP_C3HHeJ_T0090775.1 MGP_C3HHeJ_G0034034.1 mouse_genomes_project 9 11758838 11762217 - Amotl1 protein_coding retained_intron MGP_C3HHeJ_T0090776.1 MGP_C3HHeJ_G0034034.1 mouse_genomes_project 9 11797302 11819192 - MGP_C3HHeJ_P0090776 Amotl1 protein_coding protein_coding MGP_C3HHeJ_T0090777.1 MGP_C3HHeJ_G0034034.1 mouse_genomes_project 9 11797336 11818295 - MGP_C3HHeJ_P0090777 Amotl1 protein_coding protein_coding MGP_C3HHeJ_T0002322.1 MGP_C3HHeJ_G0002241.1 mouse_genomes_project 9 55469577 55471611 - TEC TEC MGP_C3HHeJ_T0094662.1 MGP_C3HHeJ_G0035069.1 mouse_genomes_project 9 115887739 115914364 - MGP_C3HHeJ_P0094662 Crtap protein_coding protein_coding MGP_C3HHeJ_T0094915.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124958910 125008147 - MGP_C3HHeJ_P0094915 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094916.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124967069 125008205 - MGP_C3HHeJ_P0094916 Zdhhc3 protein_coding protein_coding MGP_C3HHeJ_T0094917.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124969755 125008180 - MGP_C3HHeJ_P0094917 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094918.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124970423 125008166 - MGP_C3HHeJ_P0094918 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094919.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124970963 125008178 - MGP_C3HHeJ_P0094919 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094920.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124971223 124995341 - MGP_C3HHeJ_P0094920 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094921.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124973281 125008121 - MGP_C3HHeJ_P0094921 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094922.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124975767 125008204 - Zdhhc3 protein_coding retained_intron MGP_C3HHeJ_T0094923.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124977215 125008124 - MGP_C3HHeJ_P0094923 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094924.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124981952 125008178 - MGP_C3HHeJ_P0094924 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094925.1 MGP_C3HHeJ_G0035155.1 mouse_genomes_project 9 124995311 125007832 - MGP_C3HHeJ_P0094925 Zdhhc3 protein_coding protein_coding MGP_C3HHeJ_T0093233.1 MGP_C3HHeJ_G0034817.1 mouse_genomes_project 9 95853326 95861837 - MGP_C3HHeJ_P0093233 Chst2 protein_coding protein_coding MGP_C3HHeJ_T0093297.1 MGP_C3HHeJ_G0034828.1 mouse_genomes_project 9 96964402 96972557 - MGP_C3HHeJ_P0093297 protein_coding protein_coding MGP_C3HHeJ_T0015905.1 MGP_C3HHeJ_G0014009.1 mouse_genomes_project 9 91230246 91230538 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091129.1 MGP_C3HHeJ_G0034182.1 mouse_genomes_project 9 24577566 24622309 - MGP_C3HHeJ_P0091129 Glb1l3 protein_coding protein_coding MGP_C3HHeJ_T0002385.1 MGP_C3HHeJ_G0002303.1 mouse_genomes_project 9 99245472 99245989 - TEC TEC MGP_C3HHeJ_T0091762.1 MGP_C3HHeJ_G0034433.1 mouse_genomes_project 9 44948687 44951451 + MGP_C3HHeJ_P0091762 Apoa4 protein_coding protein_coding MGP_C3HHeJ_T0094961.1 MGP_C3HHeJ_G0035169.1 mouse_genomes_project 9 125773659 125782786 - MGP_C3HHeJ_P0094961 Xcr1 protein_coding protein_coding MGP_C3HHeJ_T0094685.1 MGP_C3HHeJ_G0035083.1 mouse_genomes_project 9 117544193 117695069 + MGP_C3HHeJ_P0094685 Gadl1 protein_coding protein_coding MGP_C3HHeJ_T0015838.1 MGP_C3HHeJ_G0013942.1 mouse_genomes_project 9 49038522 49039525 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100983.1 MGP_C3HHeJ_G0039177.1 mouse_genomes_project 9 73642646 73642776 - Gm25105 snoRNA snoRNA MGP_C3HHeJ_T0015816.1 MGP_C3HHeJ_G0013920.1 mouse_genomes_project 9 11643940 11645006 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093143.1 MGP_C3HHeJ_G0034794.1 mouse_genomes_project 9 89123724 89138458 + MGP_C3HHeJ_P0093143 protein_coding protein_coding MGP_C3HHeJ_T0010997.1 MGP_C3HHeJ_G0009130.1 mouse_genomes_project 9 90091948 90092017 - Mir184 miRNA miRNA MGP_C3HHeJ_T0100953.1 MGP_C3HHeJ_G0039147.1 mouse_genomes_project 9 22011080 22011175 + Gm22380 snoRNA snoRNA MGP_C3HHeJ_T0093614.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106246764 106257085 + MGP_C3HHeJ_P0093614 Aste1 protein_coding protein_coding MGP_C3HHeJ_T0093615.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106246772 106253519 + Aste1 protein_coding retained_intron MGP_C3HHeJ_T0093616.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106246787 106256794 + Aste1 protein_coding retained_intron MGP_C3HHeJ_T0093617.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106246916 106252989 + MGP_C3HHeJ_P0093617 Aste1 protein_coding protein_coding MGP_C3HHeJ_T0093618.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106248592 106256500 + MGP_C3HHeJ_P0093618 Aste1 protein_coding protein_coding MGP_C3HHeJ_T0093619.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106249190 106256655 + MGP_C3HHeJ_P0093619 Aste1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093620.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106249190 106261901 + MGP_C3HHeJ_P0093620 Aste1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093621.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106252166 106256655 + Aste1 protein_coding processed_transcript MGP_C3HHeJ_T0093622.1 MGP_C3HHeJ_G0034897.1 mouse_genomes_project 9 106252850 106257085 + MGP_C3HHeJ_P0093622 Aste1 protein_coding protein_coding MGP_C3HHeJ_T0005439.1 MGP_C3HHeJ_G0004583.1 mouse_genomes_project 9 98545740 98554483 + 4921534H16Rik antisense antisense MGP_C3HHeJ_T0005440.1 MGP_C3HHeJ_G0004583.1 mouse_genomes_project 9 98545740 98548090 + 4921534H16Rik antisense antisense MGP_C3HHeJ_T0092836.1 MGP_C3HHeJ_G0034727.1 mouse_genomes_project 9 75678179 75808910 + MGP_C3HHeJ_P0092836 Bmp5 protein_coding protein_coding MGP_C3HHeJ_T0092837.1 MGP_C3HHeJ_G0034727.1 mouse_genomes_project 9 75733890 75749168 + Bmp5 protein_coding processed_transcript MGP_C3HHeJ_T0098214.1 MGP_C3HHeJ_G0036426.1 mouse_genomes_project 9 112929524 112929642 - n-R5s90 rRNA rRNA MGP_C3HHeJ_T0010952.1 MGP_C3HHeJ_G0009085.1 mouse_genomes_project 9 15425105 15425216 - Gm44498 miRNA miRNA MGP_C3HHeJ_T0005481.1 MGP_C3HHeJ_G0004617.1 mouse_genomes_project 9 116744262 116745718 - Gm26962 antisense antisense MGP_C3HHeJ_T0018312.1 MGP_C3HHeJ_G0015501.1 mouse_genomes_project 9 63500237 63503233 - 1700055C04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0005449.1 MGP_C3HHeJ_G0004592.1 mouse_genomes_project 9 107038465 107050825 + D030055H07Rik antisense antisense MGP_C3HHeJ_T0005450.1 MGP_C3HHeJ_G0004592.1 mouse_genomes_project 9 107046066 107050871 + D030055H07Rik antisense antisense MGP_C3HHeJ_T0005451.1 MGP_C3HHeJ_G0004592.1 mouse_genomes_project 9 107047454 107051321 + D030055H07Rik antisense antisense MGP_C3HHeJ_T0093466.1 MGP_C3HHeJ_G0034867.1 mouse_genomes_project 9 102625739 103067485 - MGP_C3HHeJ_P0093466 Ephb1 protein_coding protein_coding MGP_C3HHeJ_T0093467.1 MGP_C3HHeJ_G0034867.1 mouse_genomes_project 9 102626182 103067485 - MGP_C3HHeJ_P0093467 Ephb1 protein_coding protein_coding MGP_C3HHeJ_T0093469.1 MGP_C3HHeJ_G0034867.1 mouse_genomes_project 9 102749991 103067485 - MGP_C3HHeJ_P0093469 Ephb1 protein_coding protein_coding MGP_C3HHeJ_T0093990.1 MGP_C3HHeJ_G0034956.1 mouse_genomes_project 9 108871149 108875142 + MGP_C3HHeJ_P0093990 Actl11 protein_coding protein_coding MGP_C3HHeJ_T0090871.1 MGP_C3HHeJ_G0034076.1 mouse_genomes_project 9 16734738 16735677 - MGP_C3HHeJ_P0090871 Olfr847 protein_coding protein_coding MGP_C3HHeJ_T0092829.1 MGP_C3HHeJ_G0034723.1 mouse_genomes_project 9 75384691 75448013 - MGP_C3HHeJ_P0092829 Tmod3 protein_coding protein_coding MGP_C3HHeJ_T0094209.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109556560 109559449 + MGP_C3HHeJ_P0094209 Dalrd3 protein_coding protein_coding MGP_C3HHeJ_T0094210.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109556584 109558194 + MGP_C3HHeJ_P0094210 Dalrd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094211.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109556588 109557361 + Dalrd3 protein_coding retained_intron MGP_C3HHeJ_T0094212.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109557370 109558656 + Dalrd3 protein_coding retained_intron MGP_C3HHeJ_T0094213.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109557681 109558515 + Dalrd3 protein_coding retained_intron MGP_C3HHeJ_T0094214.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109557911 109559448 + Dalrd3 protein_coding retained_intron MGP_C3HHeJ_T0094215.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109558192 109559206 + MGP_C3HHeJ_P0094215 Dalrd3 protein_coding protein_coding MGP_C3HHeJ_T0094216.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109558941 109559446 + Dalrd3 protein_coding retained_intron MGP_C3HHeJ_T0094218.1 MGP_C3HHeJ_G0034989.1 mouse_genomes_project 9 109559066 109559330 + MGP_C3HHeJ_P0094218 Dalrd3 protein_coding protein_coding MGP_C3HHeJ_T0005380.1 MGP_C3HHeJ_G0004546.1 mouse_genomes_project 9 56186078 56219001 - Man2c1os antisense antisense MGP_C3HHeJ_T0005381.1 MGP_C3HHeJ_G0004546.1 mouse_genomes_project 9 56215814 56218609 - Man2c1os antisense antisense MGP_C3HHeJ_T0005382.1 MGP_C3HHeJ_G0004546.1 mouse_genomes_project 9 56217686 56218955 - Man2c1os antisense antisense MGP_C3HHeJ_T0100986.1 MGP_C3HHeJ_G0039180.1 mouse_genomes_project 9 78058558 78058685 - Gm23609 snoRNA snoRNA MGP_C3HHeJ_T0015829.1 MGP_C3HHeJ_G0013933.1 mouse_genomes_project 9 33604974 33605244 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009126.1 MGP_C3HHeJ_G0007325.1 mouse_genomes_project 9 18942845 18949328 - Gm16853 lincRNA lincRNA MGP_C3HHeJ_T0091342.1 MGP_C3HHeJ_G0034244.1 mouse_genomes_project 9 35510320 35581416 - MGP_C3HHeJ_P0091342 Ccdc15 protein_coding protein_coding MGP_C3HHeJ_T0094088.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109156022 109216931 - MGP_C3HHeJ_P0094088 Dag1 protein_coding protein_coding MGP_C3HHeJ_T0094089.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109157332 109216788 - MGP_C3HHeJ_P0094089 Dag1 protein_coding protein_coding MGP_C3HHeJ_T0094090.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109157343 109216891 - MGP_C3HHeJ_P0094090 Dag1 protein_coding protein_coding MGP_C3HHeJ_T0094091.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109157346 109216709 - MGP_C3HHeJ_P0094091 Dag1 protein_coding protein_coding MGP_C3HHeJ_T0094092.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109169565 109216724 - MGP_C3HHeJ_P0094092 Dag1 protein_coding protein_coding MGP_C3HHeJ_T0094093.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109169603 109216682 - MGP_C3HHeJ_P0094093 Dag1 protein_coding protein_coding MGP_C3HHeJ_T0094094.1 MGP_C3HHeJ_G0034971.1 mouse_genomes_project 9 109204639 109216724 - Dag1 protein_coding retained_intron MGP_C3HHeJ_T0092914.1 MGP_C3HHeJ_G0034747.1 mouse_genomes_project 9 78467079 78468847 - MGP_C3HHeJ_P0092914 Dppa5a protein_coding protein_coding MGP_C3HHeJ_T0091871.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49650436 49655219 - MGP_C3HHeJ_P0091871 1110032A03Rik protein_coding protein_coding MGP_C3HHeJ_T0091872.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49651036 49653435 - MGP_C3HHeJ_P0091872 1110032A03Rik protein_coding protein_coding MGP_C3HHeJ_T0091873.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49651058 49664975 - 1110032A03Rik protein_coding retained_intron MGP_C3HHeJ_T0091874.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49651061 49651894 - 1110032A03Rik protein_coding retained_intron MGP_C3HHeJ_T0091875.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49651188 49655480 - MGP_C3HHeJ_P0091875 1110032A03Rik protein_coding protein_coding MGP_C3HHeJ_T0091876.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49652029 49655418 - 1110032A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0091877.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49652143 49655489 - 1110032A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0091881.1 MGP_C3HHeJ_G0034473.1 mouse_genomes_project 9 49655913 49658264 - 1110032A03Rik protein_coding processed_transcript MGP_C3HHeJ_T0091460.1 MGP_C3HHeJ_G0034332.1 mouse_genomes_project 9 38276218 38278418 + MGP_C3HHeJ_P0091460 Olfr968 protein_coding protein_coding MGP_C3HHeJ_T0094784.1 MGP_C3HHeJ_G0035114.1 mouse_genomes_project 9 121830938 121853646 - MGP_C3HHeJ_P0094784 Cx3cr1 protein_coding protein_coding MGP_C3HHeJ_T0094785.1 MGP_C3HHeJ_G0035114.1 mouse_genomes_project 9 121832356 121853647 - MGP_C3HHeJ_P0094785 Cx3cr1 protein_coding protein_coding MGP_C3HHeJ_T0091690.1 MGP_C3HHeJ_G0034413.1 mouse_genomes_project 9 43761280 43792872 - MGP_C3HHeJ_P0091690 Gm10684 protein_coding protein_coding MGP_C3HHeJ_T0005445.1 MGP_C3HHeJ_G0004588.1 mouse_genomes_project 9 104305825 104314617 + 4932413F04Rik antisense antisense MGP_C3HHeJ_T0015959.1 MGP_C3HHeJ_G0014063.1 mouse_genomes_project 9 125680058 125680332 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015823.1 MGP_C3HHeJ_G0013927.1 mouse_genomes_project 9 29172175 29172553 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010977.1 MGP_C3HHeJ_G0009110.1 mouse_genomes_project 9 51036491 51036582 - Gm27686 miRNA miRNA MGP_C3HHeJ_T0091615.1 MGP_C3HHeJ_G0034390.1 mouse_genomes_project 9 43012166 43015952 - MGP_C3HHeJ_P0091615 Trappc4 protein_coding protein_coding MGP_C3HHeJ_T0091054.1 MGP_C3HHeJ_G0034152.1 mouse_genomes_project 9 19536914 19559915 - MGP_C3HHeJ_P0091054 Rgl3 protein_coding protein_coding MGP_C3HHeJ_T0094345.1 MGP_C3HHeJ_G0035009.1 mouse_genomes_project 9 110043077 110053091 + MGP_C3HHeJ_P0094345 Ccdc51 protein_coding protein_coding MGP_C3HHeJ_T0090943.1 MGP_C3HHeJ_G0034109.1 mouse_genomes_project 9 18374751 18380413 + MGP_C3HHeJ_P0090943 A230050P20Rik protein_coding protein_coding MGP_C3HHeJ_T0090944.1 MGP_C3HHeJ_G0034109.1 mouse_genomes_project 9 18374767 18380413 + A230050P20Rik protein_coding retained_intron MGP_C3HHeJ_T0090945.1 MGP_C3HHeJ_G0034109.1 mouse_genomes_project 9 18374789 18376205 + A230050P20Rik protein_coding processed_transcript MGP_C3HHeJ_T0090946.1 MGP_C3HHeJ_G0034109.1 mouse_genomes_project 9 18375386 18379881 + A230050P20Rik protein_coding retained_intron MGP_C3HHeJ_T0090947.1 MGP_C3HHeJ_G0034109.1 mouse_genomes_project 9 18376881 18379231 + A230050P20Rik protein_coding retained_intron MGP_C3HHeJ_T0093129.1 MGP_C3HHeJ_G0034791.1 mouse_genomes_project 9 88802534 88830782 + MGP_C3HHeJ_P0093129 Zfp949 protein_coding protein_coding MGP_C3HHeJ_T0093130.1 MGP_C3HHeJ_G0034791.1 mouse_genomes_project 9 88802558 88827248 + MGP_C3HHeJ_P0093130 Zfp949 protein_coding protein_coding MGP_C3HHeJ_T0093131.1 MGP_C3HHeJ_G0034791.1 mouse_genomes_project 9 88802599 88828145 + Zfp949 protein_coding retained_intron MGP_C3HHeJ_T0093132.1 MGP_C3HHeJ_G0034791.1 mouse_genomes_project 9 88802614 88809016 + MGP_C3HHeJ_P0093132 Zfp949 protein_coding protein_coding MGP_C3HHeJ_T0093133.1 MGP_C3HHeJ_G0034791.1 mouse_genomes_project 9 88802697 88830782 + MGP_C3HHeJ_P0093133 Zfp949 protein_coding protein_coding MGP_C3HHeJ_T0093211.1 MGP_C3HHeJ_G0034810.1 mouse_genomes_project 9 92639544 92660421 + MGP_C3HHeJ_P0093211 Plscr1 protein_coding protein_coding MGP_C3HHeJ_T0002381.1 MGP_C3HHeJ_G0002299.1 mouse_genomes_project 9 96704746 96707764 + TEC TEC MGP_C3HHeJ_T0094934.1 MGP_C3HHeJ_G0035160.1 mouse_genomes_project 9 125276696 125376495 + MGP_C3HHeJ_P0094934 Lars2 protein_coding protein_coding MGP_C3HHeJ_T0091620.1 MGP_C3HHeJ_G0034395.1 mouse_genomes_project 9 43099431 43128078 + MGP_C3HHeJ_P0091620 Bcl9l protein_coding unknown_likely_coding MGP_C3HHeJ_T0091421.1 MGP_C3HHeJ_G0034299.1 mouse_genomes_project 9 37172037 37175058 + MGP_C3HHeJ_P0091421 Olfr924 protein_coding protein_coding MGP_C3HHeJ_T0092632.1 MGP_C3HHeJ_G0034687.1 mouse_genomes_project 9 70581137 70716688 - MGP_C3HHeJ_P0092632 Lipc protein_coding protein_coding MGP_C3HHeJ_T0092633.1 MGP_C3HHeJ_G0034687.1 mouse_genomes_project 9 70581275 70609648 - MGP_C3HHeJ_P0092633 Lipc protein_coding unknown_likely_coding MGP_C3HHeJ_T0092634.1 MGP_C3HHeJ_G0034687.1 mouse_genomes_project 9 70581275 70609544 - MGP_C3HHeJ_P0092634 Lipc protein_coding unknown_likely_coding MGP_C3HHeJ_T0092635.1 MGP_C3HHeJ_G0034687.1 mouse_genomes_project 9 70581275 70617737 - MGP_C3HHeJ_P0092635 Lipc protein_coding unknown_likely_coding MGP_C3HHeJ_T0002431.1 MGP_C3HHeJ_G0002349.1 mouse_genomes_project 9 111626937 111630318 - TEC TEC MGP_C3HHeJ_T0092648.1 MGP_C3HHeJ_G0034691.1 mouse_genomes_project 9 71258103 71373760 - MGP_C3HHeJ_P0092648 Gcom1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092649.1 MGP_C3HHeJ_G0034691.1 mouse_genomes_project 9 71258103 71373760 - MGP_C3HHeJ_P0092649 Gcom1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092650.1 MGP_C3HHeJ_G0034691.1 mouse_genomes_project 9 71258103 71373760 - MGP_C3HHeJ_P0092650 Gcom1 protein_coding protein_coding MGP_C3HHeJ_T0092651.1 MGP_C3HHeJ_G0034691.1 mouse_genomes_project 9 71258103 71373760 - MGP_C3HHeJ_P0092651 Gcom1 protein_coding protein_coding MGP_C3HHeJ_T0091219.1 MGP_C3HHeJ_G0034209.1 mouse_genomes_project 9 33068776 33123020 - MGP_C3HHeJ_P0091219 St3gal4 protein_coding protein_coding MGP_C3HHeJ_T0101488.1 MGP_C3HHeJ_G0039485.1 mouse_genomes_project 9 100033657 100048369 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101489.1 MGP_C3HHeJ_G0039485.1 mouse_genomes_project 9 100047857 100052171 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0092454.1 MGP_C3HHeJ_G0034647.1 mouse_genomes_project 9 65208314 65244315 + MGP_C3HHeJ_P0092454 Rbpms2 protein_coding protein_coding MGP_C3HHeJ_T0092455.1 MGP_C3HHeJ_G0034647.1 mouse_genomes_project 9 65209296 65243227 + MGP_C3HHeJ_P0092455 Rbpms2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094523.1 MGP_C3HHeJ_G0035040.1 mouse_genomes_project 9 112076320 112081915 + MGP_C3HHeJ_P0094523 Prss42 protein_coding protein_coding MGP_C3HHeJ_T0091711.1 MGP_C3HHeJ_G0034423.1 mouse_genomes_project 9 44447949 44513327 - MGP_C3HHeJ_P0091711 Cep164 protein_coding protein_coding MGP_C3HHeJ_T0091712.1 MGP_C3HHeJ_G0034423.1 mouse_genomes_project 9 44449261 44513213 - MGP_C3HHeJ_P0091712 Cep164 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091713.1 MGP_C3HHeJ_G0034423.1 mouse_genomes_project 9 44451749 44453533 - Cep164 protein_coding retained_intron MGP_C3HHeJ_T0091714.1 MGP_C3HHeJ_G0034423.1 mouse_genomes_project 9 44460664 44484946 - MGP_C3HHeJ_P0091714 Cep164 protein_coding protein_coding MGP_C3HHeJ_T0002346.1 MGP_C3HHeJ_G0002265.1 mouse_genomes_project 9 72975782 72978015 + TEC TEC MGP_C3HHeJ_T0093682.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107127170 107142655 - MGP_C3HHeJ_P0093682 Alas1 protein_coding protein_coding MGP_C3HHeJ_T0093683.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107127173 107143051 - MGP_C3HHeJ_P0093683 Alas1 protein_coding protein_coding MGP_C3HHeJ_T0093684.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107127658 107142781 - MGP_C3HHeJ_P0093684 Alas1 protein_coding protein_coding MGP_C3HHeJ_T0093685.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107127673 107137303 - Alas1 protein_coding processed_transcript MGP_C3HHeJ_T0093686.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107127926 107132454 - MGP_C3HHeJ_P0093686 Alas1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093687.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107129124 107130807 - Alas1 protein_coding retained_intron MGP_C3HHeJ_T0093688.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107130400 107133755 - Alas1 protein_coding retained_intron MGP_C3HHeJ_T0093689.1 MGP_C3HHeJ_G0034908.1 mouse_genomes_project 9 107132539 107142777 - MGP_C3HHeJ_P0093689 Alas1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093349.1 MGP_C3HHeJ_G0034837.1 mouse_genomes_project 9 98846371 98846954 + MGP_C3HHeJ_P0093349 protein_coding protein_coding MGP_C3HHeJ_T0100948.1 MGP_C3HHeJ_G0039142.1 mouse_genomes_project 9 12577936 12578006 - Scarna9 snoRNA snoRNA MGP_C3HHeJ_T0094756.1 MGP_C3HHeJ_G0035101.1 mouse_genomes_project 9 121086397 121090499 - MGP_C3HHeJ_P0094756 Myd88 protein_coding protein_coding MGP_C3HHeJ_T0094757.1 MGP_C3HHeJ_G0035101.1 mouse_genomes_project 9 121086409 121090460 - Myd88 protein_coding retained_intron MGP_C3HHeJ_T0094759.1 MGP_C3HHeJ_G0035101.1 mouse_genomes_project 9 121090147 121091869 - MGP_C3HHeJ_P0094759 Myd88 protein_coding protein_coding MGP_C3HHeJ_T0091462.1 MGP_C3HHeJ_G0034334.1 mouse_genomes_project 9 38334436 38335516 + MGP_C3HHeJ_P0091462 Olfr974 protein_coding protein_coding MGP_C3HHeJ_T0094736.1 MGP_C3HHeJ_G0035094.1 mouse_genomes_project 9 120793127 120815922 - MGP_C3HHeJ_P0094736 Plcd1 protein_coding protein_coding MGP_C3HHeJ_T0009190.1 MGP_C3HHeJ_G0007379.1 mouse_genomes_project 9 77365294 77399029 - 5730403I07Rik lincRNA lincRNA MGP_C3HHeJ_T0015941.1 MGP_C3HHeJ_G0014045.1 mouse_genomes_project 9 106400145 106400548 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093019.1 MGP_C3HHeJ_G0034769.1 mouse_genomes_project 9 83980474 84007785 - MGP_C3HHeJ_P0093019 Elovl4 protein_coding protein_coding MGP_C3HHeJ_T0093020.1 MGP_C3HHeJ_G0034769.1 mouse_genomes_project 9 83982444 84007810 - MGP_C3HHeJ_P0093020 Elovl4 protein_coding protein_coding MGP_C3HHeJ_T0091402.1 MGP_C3HHeJ_G0034286.1 mouse_genomes_project 9 36838345 36839469 + MGP_C3HHeJ_P0091402 Olfr911-ps1 protein_coding protein_coding MGP_C3HHeJ_T0092239.1 MGP_C3HHeJ_G0034587.1 mouse_genomes_project 9 58936227 58959091 + MGP_C3HHeJ_P0092239 Pkm protein_coding unknown_likely_coding MGP_C3HHeJ_T0091339.1 MGP_C3HHeJ_G0034243.1 mouse_genomes_project 9 35464226 35490524 - MGP_C3HHeJ_P0091339 Slc37a2 protein_coding protein_coding MGP_C3HHeJ_T0091340.1 MGP_C3HHeJ_G0034243.1 mouse_genomes_project 9 35465393 35490200 - MGP_C3HHeJ_P0091340 Slc37a2 protein_coding protein_coding MGP_C3HHeJ_T0091341.1 MGP_C3HHeJ_G0034243.1 mouse_genomes_project 9 35465589 35470232 - Slc37a2 protein_coding retained_intron MGP_C3HHeJ_T0090826.1 MGP_C3HHeJ_G0034049.1 mouse_genomes_project 9 12765964 12806001 + MGP_C3HHeJ_P0090826 Smco4 protein_coding protein_coding MGP_C3HHeJ_T0090827.1 MGP_C3HHeJ_G0034049.1 mouse_genomes_project 9 12781594 12805998 + MGP_C3HHeJ_P0090827 Smco4 protein_coding protein_coding MGP_C3HHeJ_T0100981.1 MGP_C3HHeJ_G0039175.1 mouse_genomes_project 9 69882841 69882972 - Gm24257 snoRNA snoRNA MGP_C3HHeJ_T0009272.1 MGP_C3HHeJ_G0007441.1 mouse_genomes_project 9 124773129 124791220 - A530083I20Rik lincRNA lincRNA MGP_C3HHeJ_T0009273.1 MGP_C3HHeJ_G0007441.1 mouse_genomes_project 9 124783400 124791206 - A530083I20Rik lincRNA lincRNA MGP_C3HHeJ_T0092540.1 MGP_C3HHeJ_G0034666.1 mouse_genomes_project 9 66596098 66617476 - MGP_C3HHeJ_P0092540 Lactb protein_coding protein_coding MGP_C3HHeJ_T0099726.1 MGP_C3HHeJ_G0037920.1 mouse_genomes_project 9 96418031 96418209 + Gm24004 snRNA snRNA MGP_C3HHeJ_T0005437.1 MGP_C3HHeJ_G0004581.1 mouse_genomes_project 9 97598445 97601652 + Gm16185 antisense antisense MGP_C3HHeJ_T0092981.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83049262 83158298 - MGP_C3HHeJ_P0092981 Phip protein_coding protein_coding MGP_C3HHeJ_T0092982.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83053425 83079445 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092983.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83072002 83075288 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092984.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83077098 83158190 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092985.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83077679 83079165 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092986.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83080237 83084186 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092987.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83083728 83115756 - MGP_C3HHeJ_P0092987 Phip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092988.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83086515 83091859 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092989.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83095974 83158208 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092990.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83096584 83110300 - MGP_C3HHeJ_P0092990 Phip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092991.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83098705 83100498 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092992.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83109028 83111332 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092993.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83110338 83157050 - MGP_C3HHeJ_P0092993 Phip protein_coding protein_coding MGP_C3HHeJ_T0092994.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83113146 83116213 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092995.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83127687 83158198 - Phip protein_coding retained_intron MGP_C3HHeJ_T0092996.1 MGP_C3HHeJ_G0034765.1 mouse_genomes_project 9 83138988 83158201 - Phip protein_coding retained_intron MGP_C3HHeJ_T0091470.1 MGP_C3HHeJ_G0034342.1 mouse_genomes_project 9 38502327 38503869 - MGP_C3HHeJ_P0091470 Olfr983 protein_coding protein_coding MGP_C3HHeJ_T0011651.1 MGP_C3HHeJ_G0009784.1 mouse_genomes_project 9 107542314 107542574 + Gm26185 misc_RNA misc_RNA MGP_C3HHeJ_T0099673.1 MGP_C3HHeJ_G0037867.1 mouse_genomes_project 9 6383968 6384030 + Gm22815 snRNA snRNA MGP_C3HHeJ_T0092107.1 MGP_C3HHeJ_G0034543.1 mouse_genomes_project 9 56231393 56236729 - MGP_C3HHeJ_P0092107 Neil1 protein_coding protein_coding MGP_C3HHeJ_T0092108.1 MGP_C3HHeJ_G0034543.1 mouse_genomes_project 9 56231663 56236907 - MGP_C3HHeJ_P0092108 Neil1 protein_coding protein_coding MGP_C3HHeJ_T0092109.1 MGP_C3HHeJ_G0034543.1 mouse_genomes_project 9 56231849 56235636 - MGP_C3HHeJ_P0092109 Neil1 protein_coding protein_coding MGP_C3HHeJ_T0094795.1 MGP_C3HHeJ_G0035118.1 mouse_genomes_project 9 121948091 121967577 + MGP_C3HHeJ_P0094795 Mobp protein_coding protein_coding MGP_C3HHeJ_T0094796.1 MGP_C3HHeJ_G0035118.1 mouse_genomes_project 9 121948091 121974286 + MGP_C3HHeJ_P0094796 Mobp protein_coding protein_coding MGP_C3HHeJ_T0094797.1 MGP_C3HHeJ_G0035118.1 mouse_genomes_project 9 121948091 121979679 + MGP_C3HHeJ_P0094797 Mobp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094798.1 MGP_C3HHeJ_G0035118.1 mouse_genomes_project 9 121948091 121974286 + MGP_C3HHeJ_P0094798 Mobp protein_coding protein_coding MGP_C3HHeJ_T0091904.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49787936 49905417 - MGP_C3HHeJ_P0091904 Sik2 protein_coding protein_coding MGP_C3HHeJ_T0091905.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49787936 49905317 - MGP_C3HHeJ_P0091905 Sik2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091906.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49787936 49905280 - MGP_C3HHeJ_P0091906 Sik2 protein_coding protein_coding MGP_C3HHeJ_T0091907.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49787936 49905280 - MGP_C3HHeJ_P0091907 Sik2 protein_coding protein_coding MGP_C3HHeJ_T0091908.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49825601 49905370 - Sik2 protein_coding processed_transcript MGP_C3HHeJ_T0091909.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49827899 49905328 - Sik2 protein_coding processed_transcript MGP_C3HHeJ_T0091910.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49831173 49905344 - Sik2 protein_coding retained_intron MGP_C3HHeJ_T0091911.1 MGP_C3HHeJ_G0034477.1 mouse_genomes_project 9 49891932 49905355 - Sik2 protein_coding retained_intron MGP_C3HHeJ_T0091143.1 MGP_C3HHeJ_G0034189.1 mouse_genomes_project 9 25082135 25114665 + MGP_C3HHeJ_P0091143 Igsf9b protein_coding protein_coding MGP_C3HHeJ_T0091144.1 MGP_C3HHeJ_G0034189.1 mouse_genomes_project 9 25082137 25119293 + MGP_C3HHeJ_P0091144 Igsf9b protein_coding protein_coding MGP_C3HHeJ_T0091145.1 MGP_C3HHeJ_G0034189.1 mouse_genomes_project 9 25082361 25130508 + MGP_C3HHeJ_P0091145 Igsf9b protein_coding unknown_likely_coding MGP_C3HHeJ_T0010996.1 MGP_C3HHeJ_G0009129.1 mouse_genomes_project 9 77598141 77598215 + Gm25250 miRNA miRNA MGP_C3HHeJ_T0015943.1 MGP_C3HHeJ_G0014047.1 mouse_genomes_project 9 107971582 107972785 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094688.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118199365 118910775 - MGP_C3HHeJ_P0094688 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094689.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118203921 118910791 - MGP_C3HHeJ_P0094689 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094690.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118204204 118464050 - MGP_C3HHeJ_P0094690 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094691.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118204639 118910438 - MGP_C3HHeJ_P0094691 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094692.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118204639 119302318 - MGP_C3HHeJ_P0094692 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094693.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118204640 118910429 - MGP_C3HHeJ_P0094693 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094694.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118206024 118910795 - MGP_C3HHeJ_P0094694 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094695.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118210375 118464063 - MGP_C3HHeJ_P0094695 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094696.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118312784 118910794 - Rbms3 protein_coding retained_intron MGP_C3HHeJ_T0094697.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118446115 118910113 - MGP_C3HHeJ_P0094697 Rbms3 protein_coding protein_coding MGP_C3HHeJ_T0094698.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118489744 118910791 - Rbms3 protein_coding processed_transcript MGP_C3HHeJ_T0094699.1 MGP_C3HHeJ_G0035085.1 mouse_genomes_project 9 118588097 118909909 - Rbms3 protein_coding processed_transcript MGP_C3HHeJ_T0101285.1 MGP_C3HHeJ_G0039386.1 mouse_genomes_project 9 111011934 111017739 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101286.1 MGP_C3HHeJ_G0039386.1 mouse_genomes_project 9 111014167 111017743 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101287.1 MGP_C3HHeJ_G0039386.1 mouse_genomes_project 9 111014365 111015377 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0090975.1 MGP_C3HHeJ_G0034125.1 mouse_genomes_project 9 18752175 18761778 - MGP_C3HHeJ_P0090975 Keap1 protein_coding protein_coding MGP_C3HHeJ_T0090976.1 MGP_C3HHeJ_G0034125.1 mouse_genomes_project 9 18752176 18761517 - MGP_C3HHeJ_P0090976 Keap1 protein_coding protein_coding MGP_C3HHeJ_T0090977.1 MGP_C3HHeJ_G0034125.1 mouse_genomes_project 9 18752512 18761259 - MGP_C3HHeJ_P0090977 Keap1 protein_coding protein_coding MGP_C3HHeJ_T0090978.1 MGP_C3HHeJ_G0034125.1 mouse_genomes_project 9 18753078 18761525 - MGP_C3HHeJ_P0090978 Keap1 protein_coding protein_coding MGP_C3HHeJ_T0090979.1 MGP_C3HHeJ_G0034125.1 mouse_genomes_project 9 18758568 18759639 - Keap1 protein_coding processed_transcript MGP_C3HHeJ_T0094237.1 MGP_C3HHeJ_G0034993.1 mouse_genomes_project 9 109658049 109661260 + Slc25a20 protein_coding retained_intron MGP_C3HHeJ_T0094238.1 MGP_C3HHeJ_G0034993.1 mouse_genomes_project 9 109658059 109681436 + MGP_C3HHeJ_P0094238 Slc25a20 protein_coding protein_coding MGP_C3HHeJ_T0094239.1 MGP_C3HHeJ_G0034993.1 mouse_genomes_project 9 109667406 109677586 + Slc25a20 protein_coding retained_intron MGP_C3HHeJ_T0092113.1 MGP_C3HHeJ_G0034547.1 mouse_genomes_project 9 56535325 56562715 - MGP_C3HHeJ_P0092113 Ppcdc protein_coding protein_coding MGP_C3HHeJ_T0090739.1 MGP_C3HHeJ_G0034025.1 mouse_genomes_project 9 10525310 10862513 + MGP_C3HHeJ_P0090739 protein_coding protein_coding MGP_C3HHeJ_T0090741.1 MGP_C3HHeJ_G0034025.1 mouse_genomes_project 9 10767459 10862532 + MGP_C3HHeJ_P0090741 protein_coding protein_coding MGP_C3HHeJ_T0090742.1 MGP_C3HHeJ_G0034025.1 mouse_genomes_project 9 10769106 10860487 + MGP_C3HHeJ_P0090742 protein_coding protein_coding MGP_C3HHeJ_T0090743.1 MGP_C3HHeJ_G0034025.1 mouse_genomes_project 9 10810176 10860489 + protein_coding processed_transcript MGP_C3HHeJ_T0094127.1 MGP_C3HHeJ_G0034980.1 mouse_genomes_project 9 109397244 109406829 + MGP_C3HHeJ_P0094127 BC048562 protein_coding protein_coding MGP_C3HHeJ_T0094128.1 MGP_C3HHeJ_G0034980.1 mouse_genomes_project 9 109397256 109406629 + BC048562 protein_coding processed_transcript MGP_C3HHeJ_T0092878.1 MGP_C3HHeJ_G0034735.1 mouse_genomes_project 9 77661792 77690869 + MGP_C3HHeJ_P0092878 Klhl31 protein_coding protein_coding MGP_C3HHeJ_T0011649.1 MGP_C3HHeJ_G0009782.1 mouse_genomes_project 9 99245450 99245557 - Gm27919 misc_RNA misc_RNA MGP_C3HHeJ_T0005476.1 MGP_C3HHeJ_G0004612.1 mouse_genomes_project 9 111200354 111203222 - Gm43732 antisense antisense MGP_C3HHeJ_T0009144.1 MGP_C3HHeJ_G0007342.1 mouse_genomes_project 9 38986357 38988834 + Gm17540 lincRNA lincRNA MGP_C3HHeJ_T0093434.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101262517 101408323 + MGP_C3HHeJ_P0093434 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093435.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310553 101474000 + MGP_C3HHeJ_P0093435 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093436.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310553 101637784 + MGP_C3HHeJ_P0093436 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093437.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310705 101409904 + Stag1 protein_coding retained_intron MGP_C3HHeJ_T0093438.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310718 101382988 + Stag1 protein_coding retained_intron MGP_C3HHeJ_T0093439.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310718 101383007 + Stag1 protein_coding retained_intron MGP_C3HHeJ_T0093440.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310718 101637783 + MGP_C3HHeJ_P0093440 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093441.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310721 101545510 + MGP_C3HHeJ_P0093441 Stag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093442.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310741 101636637 + MGP_C3HHeJ_P0093442 Stag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093443.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310873 101636644 + MGP_C3HHeJ_P0093443 Stag1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093444.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101310875 101454019 + MGP_C3HHeJ_P0093444 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093445.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101473912 101636654 + Stag1 protein_coding processed_transcript MGP_C3HHeJ_T0093446.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101511848 101525860 + Stag1 protein_coding retained_intron MGP_C3HHeJ_T0093447.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101521736 101636072 + MGP_C3HHeJ_P0093447 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093448.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101524836 101532485 + Stag1 protein_coding retained_intron MGP_C3HHeJ_T0093449.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101569070 101630894 + MGP_C3HHeJ_P0093449 Stag1 protein_coding protein_coding MGP_C3HHeJ_T0093450.1 MGP_C3HHeJ_G0034863.1 mouse_genomes_project 9 101635006 101638614 + Stag1 protein_coding retained_intron MGP_C3HHeJ_T0090913.1 MGP_C3HHeJ_G0034102.1 mouse_genomes_project 9 18080415 18094268 + MGP_C3HHeJ_P0090913 Zfp846 protein_coding protein_coding MGP_C3HHeJ_T0090914.1 MGP_C3HHeJ_G0034102.1 mouse_genomes_project 9 18080615 18094270 + MGP_C3HHeJ_P0090914 Zfp846 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090915.1 MGP_C3HHeJ_G0034102.1 mouse_genomes_project 9 18086966 18093547 + MGP_C3HHeJ_P0090915 Zfp846 protein_coding protein_coding MGP_C3HHeJ_T0094673.1 MGP_C3HHeJ_G0035079.1 mouse_genomes_project 9 116329531 116389560 - MGP_C3HHeJ_P0094673 Cmtm8 protein_coding protein_coding MGP_C3HHeJ_T0015940.1 MGP_C3HHeJ_G0014044.1 mouse_genomes_project 9 105109747 105110462 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092037.1 MGP_C3HHeJ_G0034525.1 mouse_genomes_project 9 54469707 54529384 - MGP_C3HHeJ_P0092037 Etfa protein_coding protein_coding MGP_C3HHeJ_T0092038.1 MGP_C3HHeJ_G0034525.1 mouse_genomes_project 9 54490345 54504648 - Etfa protein_coding processed_transcript MGP_C3HHeJ_T0092039.1 MGP_C3HHeJ_G0034525.1 mouse_genomes_project 9 54503871 54529261 - Etfa protein_coding processed_transcript MGP_C3HHeJ_T0092040.1 MGP_C3HHeJ_G0034525.1 mouse_genomes_project 9 54505960 54528949 - Etfa protein_coding processed_transcript MGP_C3HHeJ_T0100994.1 MGP_C3HHeJ_G0039188.1 mouse_genomes_project 9 96097725 96097835 + Gm25582 snoRNA snoRNA MGP_C3HHeJ_T0091182.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29290410 29330163 + MGP_C3HHeJ_P0091182 Nfrkb protein_coding protein_coding MGP_C3HHeJ_T0091183.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29290415 29330163 + MGP_C3HHeJ_P0091183 Nfrkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091184.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29290422 29302571 + MGP_C3HHeJ_P0091184 Nfrkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091185.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29290431 29330163 + MGP_C3HHeJ_P0091185 Nfrkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091186.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29290439 29330172 + MGP_C3HHeJ_P0091186 Nfrkb protein_coding unknown_likely_coding MGP_C3HHeJ_T0091187.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29300613 29307127 + Nfrkb protein_coding retained_intron MGP_C3HHeJ_T0091188.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29305160 29307099 + Nfrkb protein_coding retained_intron MGP_C3HHeJ_T0091189.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29307147 29330163 + Nfrkb protein_coding retained_intron MGP_C3HHeJ_T0091190.1 MGP_C3HHeJ_G0034200.1 mouse_genomes_project 9 29317920 29318966 + Nfrkb protein_coding retained_intron MGP_C3HHeJ_T0092788.1 MGP_C3HHeJ_G0034713.1 mouse_genomes_project 9 74717045 74746762 + MGP_C3HHeJ_P0092788 Onecut1 protein_coding protein_coding MGP_C3HHeJ_T0092789.1 MGP_C3HHeJ_G0034713.1 mouse_genomes_project 9 74721599 74745341 + Onecut1 protein_coding processed_transcript MGP_C3HHeJ_T0091070.1 MGP_C3HHeJ_G0034160.1 mouse_genomes_project 9 19713681 19718816 - MGP_C3HHeJ_P0091070 Acp5 protein_coding protein_coding MGP_C3HHeJ_T0091071.1 MGP_C3HHeJ_G0034160.1 mouse_genomes_project 9 19713681 19723986 - MGP_C3HHeJ_P0091071 Acp5 protein_coding protein_coding MGP_C3HHeJ_T0091072.1 MGP_C3HHeJ_G0034160.1 mouse_genomes_project 9 19713681 19717549 - MGP_C3HHeJ_P0091072 Acp5 protein_coding protein_coding MGP_C3HHeJ_T0002380.1 MGP_C3HHeJ_G0002298.1 mouse_genomes_project 9 96513259 96515486 + TEC TEC MGP_C3HHeJ_T0018303.1 MGP_C3HHeJ_G0015498.1 mouse_genomes_project 9 56141513 56157347 - Gm10658 processed_transcript processed_transcript MGP_C3HHeJ_T0018304.1 MGP_C3HHeJ_G0015498.1 mouse_genomes_project 9 56142086 56157506 - Gm10658 processed_transcript processed_transcript MGP_C3HHeJ_T0094055.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108998627 109032115 - MGP_C3HHeJ_P0094055 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094056.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108998765 109028070 - MGP_C3HHeJ_P0094056 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094057.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108998770 109028509 - Rnf123 protein_coding retained_intron MGP_C3HHeJ_T0094058.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108998770 109028070 - MGP_C3HHeJ_P0094058 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094059.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108998770 109028144 - MGP_C3HHeJ_P0094059 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094060.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108998786 108999324 - Rnf123 protein_coding retained_intron MGP_C3HHeJ_T0094061.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108999318 109006840 - MGP_C3HHeJ_P0094061 Rnf123 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094062.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108999327 109028144 - MGP_C3HHeJ_P0094062 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094063.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 108999335 108999793 - Rnf123 protein_coding retained_intron MGP_C3HHeJ_T0094065.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109002992 109028497 - Rnf123 protein_coding retained_intron MGP_C3HHeJ_T0094066.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109003159 109004133 - Rnf123 protein_coding retained_intron MGP_C3HHeJ_T0094067.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109003653 109006875 - MGP_C3HHeJ_P0094067 Rnf123 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094068.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109005261 109009099 - Rnf123 protein_coding retained_intron MGP_C3HHeJ_T0094069.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109018269 109027040 - MGP_C3HHeJ_P0094069 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094070.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109018328 109028074 - MGP_C3HHeJ_P0094070 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094071.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109018555 109028035 - MGP_C3HHeJ_P0094071 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0094072.1 MGP_C3HHeJ_G0034966.1 mouse_genomes_project 9 109026492 109032113 - MGP_C3HHeJ_P0094072 Rnf123 protein_coding protein_coding MGP_C3HHeJ_T0090856.1 MGP_C3HHeJ_G0034061.1 mouse_genomes_project 9 15808670 15816668 + MGP_C3HHeJ_P0090856 Mbd3l1 protein_coding protein_coding MGP_C3HHeJ_T0002344.1 MGP_C3HHeJ_G0002263.1 mouse_genomes_project 9 72802833 72804107 - TEC TEC MGP_C3HHeJ_T0015958.1 MGP_C3HHeJ_G0014062.1 mouse_genomes_project 9 125214251 125214678 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005474.1 MGP_C3HHeJ_G0004610.1 mouse_genomes_project 9 110500706 110516915 + antisense antisense MGP_C3HHeJ_T0091793.1 MGP_C3HHeJ_G0034441.1 mouse_genomes_project 9 47166846 47187196 + MGP_C3HHeJ_P0091793 Nxpe4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0090982.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18797185 18814516 - MGP_C3HHeJ_P0090982 Kri1 protein_coding protein_coding MGP_C3HHeJ_T0090983.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18797364 18814500 - MGP_C3HHeJ_P0090983 Kri1 protein_coding protein_coding MGP_C3HHeJ_T0090984.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18797596 18799122 - Kri1 protein_coding retained_intron MGP_C3HHeJ_T0090985.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18803864 18814516 - Kri1 protein_coding retained_intron MGP_C3HHeJ_T0090986.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18806672 18814503 - Kri1 protein_coding retained_intron MGP_C3HHeJ_T0090987.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18807632 18814516 - Kri1 protein_coding retained_intron MGP_C3HHeJ_T0090988.1 MGP_C3HHeJ_G0034128.1 mouse_genomes_project 9 18814071 18814503 - Kri1 protein_coding retained_intron MGP_C3HHeJ_T0002395.1 MGP_C3HHeJ_G0002313.1 mouse_genomes_project 9 101807361 101812875 + TEC TEC MGP_C3HHeJ_T0005366.1 MGP_C3HHeJ_G0004538.1 mouse_genomes_project 9 44950612 44951521 - Gm10680 antisense antisense MGP_C3HHeJ_T0093046.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701870 86794033 + MGP_C3HHeJ_P0093046 Dopey1 protein_coding protein_coding MGP_C3HHeJ_T0093047.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701886 86746782 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093048.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701895 86741670 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093049.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701895 86783539 + MGP_C3HHeJ_P0093049 Dopey1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093050.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701927 86742794 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093051.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701927 86751522 + MGP_C3HHeJ_P0093051 Dopey1 protein_coding protein_coding MGP_C3HHeJ_T0093052.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86701930 86793914 + MGP_C3HHeJ_P0093052 Dopey1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093053.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86723330 86793916 + MGP_C3HHeJ_P0093053 Dopey1 protein_coding protein_coding MGP_C3HHeJ_T0093054.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86725187 86727993 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093055.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86727521 86730423 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093056.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86735523 86739494 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093057.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86742140 86746058 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093058.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86742432 86754871 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093059.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86760451 86764396 + MGP_C3HHeJ_P0093059 Dopey1 protein_coding protein_coding MGP_C3HHeJ_T0093060.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86762802 86784598 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093061.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86769808 86792735 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093062.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86771235 86792740 + MGP_C3HHeJ_P0093062 Dopey1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093063.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86780928 86787225 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0093064.1 MGP_C3HHeJ_G0034776.1 mouse_genomes_project 9 86787724 86792740 + Dopey1 protein_coding retained_intron MGP_C3HHeJ_T0091763.1 MGP_C3HHeJ_G0034434.1 mouse_genomes_project 9 44978299 44981586 + MGP_C3HHeJ_P0091763 Apoa5 protein_coding protein_coding MGP_C3HHeJ_T0091764.1 MGP_C3HHeJ_G0034434.1 mouse_genomes_project 9 44978744 44981586 + MGP_C3HHeJ_P0091764 Apoa5 protein_coding protein_coding MGP_C3HHeJ_T0009135.1 MGP_C3HHeJ_G0007334.1 mouse_genomes_project 9 30990313 31042959 + lincRNA lincRNA MGP_C3HHeJ_T0002333.1 MGP_C3HHeJ_G0002252.1 mouse_genomes_project 9 72156451 72158010 + TEC TEC MGP_C3HHeJ_T0093793.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107813650 108144710 - MGP_C3HHeJ_P0093793 Dock3 protein_coding protein_coding MGP_C3HHeJ_T0093794.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107813931 107838169 - MGP_C3HHeJ_P0093794 Dock3 protein_coding protein_coding MGP_C3HHeJ_T0093795.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107817602 107823146 - MGP_C3HHeJ_P0093795 Dock3 protein_coding protein_coding MGP_C3HHeJ_T0093796.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107829820 107832974 - Dock3 protein_coding processed_transcript MGP_C3HHeJ_T0093797.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107836526 107838471 - Dock3 protein_coding retained_intron MGP_C3HHeJ_T0093798.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107839669 107870347 - MGP_C3HHeJ_P0093798 Dock3 protein_coding protein_coding MGP_C3HHeJ_T0093799.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107861997 107885892 - MGP_C3HHeJ_P0093799 Dock3 protein_coding protein_coding MGP_C3HHeJ_T0093800.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107944516 107946372 - Dock3 protein_coding retained_intron MGP_C3HHeJ_T0093801.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 107974670 108144669 - Dock3 protein_coding retained_intron MGP_C3HHeJ_T0093802.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 108000108 108144657 - Dock3 protein_coding retained_intron MGP_C3HHeJ_T0093803.1 MGP_C3HHeJ_G0034930.1 mouse_genomes_project 9 108023167 108144383 - Dock3 protein_coding retained_intron MGP_C3HHeJ_T0100942.1 MGP_C3HHeJ_G0039136.1 mouse_genomes_project 9 12566075 12566146 + Gm24299 snoRNA snoRNA MGP_C3HHeJ_T0092240.1 MGP_C3HHeJ_G0034588.1 mouse_genomes_project 9 58959856 58994167 + MGP_C3HHeJ_P0092240 Gramd2 protein_coding protein_coding MGP_C3HHeJ_T0092241.1 MGP_C3HHeJ_G0034588.1 mouse_genomes_project 9 58987905 58998908 + MGP_C3HHeJ_P0092241 Gramd2 protein_coding protein_coding MGP_C3HHeJ_T0092242.1 MGP_C3HHeJ_G0034588.1 mouse_genomes_project 9 58988032 58996668 + MGP_C3HHeJ_P0092242 Gramd2 protein_coding protein_coding MGP_C3HHeJ_T0092243.1 MGP_C3HHeJ_G0034588.1 mouse_genomes_project 9 58990425 58994085 + Gramd2 protein_coding retained_intron MGP_C3HHeJ_T0092244.1 MGP_C3HHeJ_G0034588.1 mouse_genomes_project 9 58991449 58996558 + MGP_C3HHeJ_P0092244 Gramd2 protein_coding protein_coding MGP_C3HHeJ_T0092245.1 MGP_C3HHeJ_G0034588.1 mouse_genomes_project 9 58994359 58998908 + Gramd2 protein_coding retained_intron MGP_C3HHeJ_T0091270.1 MGP_C3HHeJ_G0034220.1 mouse_genomes_project 9 33584110 33705951 + MGP_C3HHeJ_P0091270 Pate2 protein_coding protein_coding MGP_C3HHeJ_T0091271.1 MGP_C3HHeJ_G0034220.1 mouse_genomes_project 9 33587726 33664663 + Pate2 protein_coding processed_transcript MGP_C3HHeJ_T0091274.1 MGP_C3HHeJ_G0034220.1 mouse_genomes_project 9 33686137 33689388 + MGP_C3HHeJ_P0091274 Pate2 protein_coding protein_coding MGP_C3HHeJ_T0091275.1 MGP_C3HHeJ_G0034220.1 mouse_genomes_project 9 33686149 33687914 + Pate2 protein_coding retained_intron MGP_C3HHeJ_T0100972.1 MGP_C3HHeJ_G0039166.1 mouse_genomes_project 9 63653392 63653460 + Gm23344 snoRNA snoRNA MGP_C3HHeJ_T0094836.1 MGP_C3HHeJ_G0035128.1 mouse_genomes_project 9 123497919 123530366 + MGP_C3HHeJ_P0094836 Vipr1 protein_coding protein_coding MGP_C3HHeJ_T0094837.1 MGP_C3HHeJ_G0035128.1 mouse_genomes_project 9 123498256 123517688 + Vipr1 protein_coding processed_transcript MGP_C3HHeJ_T0094838.1 MGP_C3HHeJ_G0035128.1 mouse_genomes_project 9 123522015 123523308 + Vipr1 protein_coding retained_intron MGP_C3HHeJ_T0094839.1 MGP_C3HHeJ_G0035128.1 mouse_genomes_project 9 123526117 123526921 + Vipr1 protein_coding retained_intron MGP_C3HHeJ_T0090940.1 MGP_C3HHeJ_G0034107.1 mouse_genomes_project 9 18271130 18316703 - MGP_C3HHeJ_P0090940 Col5a3 protein_coding protein_coding MGP_C3HHeJ_T0090941.1 MGP_C3HHeJ_G0034107.1 mouse_genomes_project 9 18283656 18316703 - Col5a3 protein_coding retained_intron MGP_C3HHeJ_T0090860.1 MGP_C3HHeJ_G0034065.1 mouse_genomes_project 9 16216160 16217126 + MGP_C3HHeJ_P0090860 Olfr829 protein_coding protein_coding MGP_C3HHeJ_T0091276.1 MGP_C3HHeJ_G0034223.1 mouse_genomes_project 9 33700712 33703004 - MGP_C3HHeJ_P0091276 Pate1 protein_coding protein_coding MGP_C3HHeJ_T0091277.1 MGP_C3HHeJ_G0034223.1 mouse_genomes_project 9 33701058 33703023 - Pate1 protein_coding retained_intron MGP_C3HHeJ_T0015945.1 MGP_C3HHeJ_G0014049.1 mouse_genomes_project 9 109108983 109109506 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090833.1 MGP_C3HHeJ_G0034051.1 mouse_genomes_project 9 12981689 13013882 + MGP_C3HHeJ_P0090833 Slc36a4 protein_coding protein_coding MGP_C3HHeJ_T0015915.1 MGP_C3HHeJ_G0014019.1 mouse_genomes_project 9 95881384 95882145 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090962.1 MGP_C3HHeJ_G0034118.1 mouse_genomes_project 9 18543865 18550777 + MGP_C3HHeJ_P0090962 Icam5 protein_coding protein_coding MGP_C3HHeJ_T0094889.1 MGP_C3HHeJ_G0035143.1 mouse_genomes_project 9 124056521 124178525 - MGP_C3HHeJ_P0094889 Ano10 protein_coding protein_coding MGP_C3HHeJ_T0015926.1 MGP_C3HHeJ_G0014030.1 mouse_genomes_project 9 99796322 99796842 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091013.1 MGP_C3HHeJ_G0034135.1 mouse_genomes_project 9 19047674 19050481 - MGP_C3HHeJ_P0091013 Tmed1 protein_coding protein_coding MGP_C3HHeJ_T0099708.1 MGP_C3HHeJ_G0037902.1 mouse_genomes_project 9 70299050 70299158 + Gm22229 snRNA snRNA MGP_C3HHeJ_T0097945.1 MGP_C3HHeJ_G0036157.1 mouse_genomes_project 9 16498960 16499909 + pseudogene pseudogene MGP_C3HHeJ_T0094929.1 MGP_C3HHeJ_G0035157.1 mouse_genomes_project 9 125052534 125060206 + MGP_C3HHeJ_P0094929 Clec3b protein_coding protein_coding MGP_C3HHeJ_T0091961.1 MGP_C3HHeJ_G0034499.1 mouse_genomes_project 9 52724276 52780572 + MGP_C3HHeJ_P0091961 Slc35f2 protein_coding protein_coding MGP_C3HHeJ_T0005421.1 MGP_C3HHeJ_G0004574.1 mouse_genomes_project 9 96092440 96123194 - Gm16126 antisense antisense MGP_C3HHeJ_T0098206.1 MGP_C3HHeJ_G0036418.1 mouse_genomes_project 9 65426965 65427078 + n-R5s85 rRNA rRNA MGP_C3HHeJ_T0018330.1 MGP_C3HHeJ_G0015510.1 mouse_genomes_project 9 86058347 86082103 - 9330154J02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0018331.1 MGP_C3HHeJ_G0015510.1 mouse_genomes_project 9 86058347 86082946 - 9330154J02Rik processed_transcript antisense MGP_C3HHeJ_T0018332.1 MGP_C3HHeJ_G0015510.1 mouse_genomes_project 9 86058408 86083138 - 9330154J02Rik processed_transcript antisense MGP_C3HHeJ_T0018333.1 MGP_C3HHeJ_G0015510.1 mouse_genomes_project 9 86059618 86082102 - 9330154J02Rik processed_transcript retained_intron MGP_C3HHeJ_T0100971.1 MGP_C3HHeJ_G0039165.1 mouse_genomes_project 9 59724446 59724569 + Gm22099 snoRNA snoRNA MGP_C3HHeJ_T0094907.1 MGP_C3HHeJ_G0035151.1 mouse_genomes_project 9 124831758 124839926 - MGP_C3HHeJ_P0094907 1110059G10Rik protein_coding protein_coding MGP_C3HHeJ_T0094908.1 MGP_C3HHeJ_G0035151.1 mouse_genomes_project 9 124834204 124839879 - MGP_C3HHeJ_P0094908 1110059G10Rik protein_coding protein_coding MGP_C3HHeJ_T0005420.1 MGP_C3HHeJ_G0004573.1 mouse_genomes_project 9 95973998 95976090 + Gm28424 antisense antisense MGP_C3HHeJ_T0093664.1 MGP_C3HHeJ_G0034903.1 mouse_genomes_project 9 107043945 107049237 - MGP_C3HHeJ_P0093664 Glyctk protein_coding protein_coding MGP_C3HHeJ_T0093665.1 MGP_C3HHeJ_G0034903.1 mouse_genomes_project 9 107043957 107049257 - MGP_C3HHeJ_P0093665 Glyctk protein_coding protein_coding MGP_C3HHeJ_T0093666.1 MGP_C3HHeJ_G0034903.1 mouse_genomes_project 9 107048409 107049236 - MGP_C3HHeJ_P0093666 Glyctk protein_coding protein_coding MGP_C3HHeJ_T0093667.1 MGP_C3HHeJ_G0034903.1 mouse_genomes_project 9 107048708 107049229 - MGP_C3HHeJ_P0093667 Glyctk protein_coding protein_coding MGP_C3HHeJ_T0091749.1 MGP_C3HHeJ_G0034429.1 mouse_genomes_project 9 44671535 44691154 - MGP_C3HHeJ_P0091749 Pafah1b2 protein_coding protein_coding MGP_C3HHeJ_T0092946.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80200957 80228396 + Senp6 protein_coding retained_intron MGP_C3HHeJ_T0092947.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80200957 80283661 + MGP_C3HHeJ_P0092947 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092948.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80200990 80252225 + MGP_C3HHeJ_P0092948 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092949.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80201153 80283489 + MGP_C3HHeJ_P0092949 Senp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092950.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80201578 80282570 + MGP_C3HHeJ_P0092950 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092951.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80201871 80221425 + Senp6 protein_coding processed_transcript MGP_C3HHeJ_T0092952.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80226207 80259771 + MGP_C3HHeJ_P0092952 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092953.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80237105 80282420 + MGP_C3HHeJ_P0092953 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092954.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80252493 80257218 + MGP_C3HHeJ_P0092954 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092955.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80252510 80259843 + Senp6 protein_coding processed_transcript MGP_C3HHeJ_T0092956.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80261587 80275237 + MGP_C3HHeJ_P0092956 Senp6 protein_coding protein_coding MGP_C3HHeJ_T0092957.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80275037 80282879 + Senp6 protein_coding retained_intron MGP_C3HHeJ_T0092958.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80277699 80282417 + Senp6 protein_coding retained_intron MGP_C3HHeJ_T0092959.1 MGP_C3HHeJ_G0034759.1 mouse_genomes_project 9 80280752 80282713 + Senp6 protein_coding retained_intron MGP_C3HHeJ_T0091475.1 MGP_C3HHeJ_G0034347.1 mouse_genomes_project 9 38620993 38644309 + MGP_C3HHeJ_P0091475 Zfp202 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091476.1 MGP_C3HHeJ_G0034347.1 mouse_genomes_project 9 38621044 38642574 + MGP_C3HHeJ_P0091476 Zfp202 protein_coding protein_coding MGP_C3HHeJ_T0015833.1 MGP_C3HHeJ_G0013937.1 mouse_genomes_project 9 36470458 36471493 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002317.1 MGP_C3HHeJ_G0002236.1 mouse_genomes_project 9 32527314 32528224 + TEC TEC MGP_C3HHeJ_T0091477.1 MGP_C3HHeJ_G0034348.1 mouse_genomes_project 9 38701254 38723338 + MGP_C3HHeJ_P0091477 Scn3b protein_coding protein_coding MGP_C3HHeJ_T0091478.1 MGP_C3HHeJ_G0034348.1 mouse_genomes_project 9 38701286 38711531 + Scn3b protein_coding processed_transcript MGP_C3HHeJ_T0091479.1 MGP_C3HHeJ_G0034348.1 mouse_genomes_project 9 38701297 38710188 + Scn3b protein_coding retained_intron MGP_C3HHeJ_T0091480.1 MGP_C3HHeJ_G0034348.1 mouse_genomes_project 9 38701446 38709434 + Scn3b protein_coding retained_intron MGP_C3HHeJ_T0091481.1 MGP_C3HHeJ_G0034348.1 mouse_genomes_project 9 38701704 38720121 + MGP_C3HHeJ_P0091481 Scn3b protein_coding protein_coding MGP_C3HHeJ_T0090709.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4961443 5041031 - MGP_C3HHeJ_P0090709 Yap1 protein_coding protein_coding MGP_C3HHeJ_T0090710.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4961443 5041039 - MGP_C3HHeJ_P0090710 Yap1 protein_coding protein_coding MGP_C3HHeJ_T0090711.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4963941 5040833 - MGP_C3HHeJ_P0090711 Yap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090712.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4963941 5040833 - MGP_C3HHeJ_P0090712 Yap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090713.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4963941 5038146 - MGP_C3HHeJ_P0090713 Yap1 protein_coding protein_coding MGP_C3HHeJ_T0090714.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4963941 5040833 - MGP_C3HHeJ_P0090714 Yap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090715.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 4997608 5001122 - Yap1 protein_coding processed_transcript MGP_C3HHeJ_T0090716.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 5009096 5040200 - Yap1 protein_coding processed_transcript MGP_C3HHeJ_T0090717.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 5009138 5040218 - Yap1 protein_coding processed_transcript MGP_C3HHeJ_T0090718.1 MGP_C3HHeJ_G0034014.1 mouse_genomes_project 9 5033350 5041039 - Yap1 protein_coding retained_intron MGP_C3HHeJ_T0090802.1 MGP_C3HHeJ_G0034042.1 mouse_genomes_project 9 12228278 12274479 - MGP_C3HHeJ_P0090802 Panx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090803.1 MGP_C3HHeJ_G0034042.1 mouse_genomes_project 9 12228631 12274038 - MGP_C3HHeJ_P0090803 Panx1 protein_coding protein_coding MGP_C3HHeJ_T0090804.1 MGP_C3HHeJ_G0034042.1 mouse_genomes_project 9 12230411 12233002 - Panx1 protein_coding retained_intron MGP_C3HHeJ_T0091919.1 MGP_C3HHeJ_G0034484.1 mouse_genomes_project 9 50529581 50532590 + MGP_C3HHeJ_P0091919 protein_coding protein_coding MGP_C3HHeJ_T0090678.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4376047 4381454 + MGP_C3HHeJ_P0090678 Mmp12 protein_coding protein_coding MGP_C3HHeJ_T0090679.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4379040 4409597 + MGP_C3HHeJ_P0090679 Mmp12 protein_coding protein_coding MGP_C3HHeJ_T0090680.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4379040 4397428 + MGP_C3HHeJ_P0090680 Mmp12 protein_coding protein_coding MGP_C3HHeJ_T0090681.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4379072 4394630 + Mmp12 protein_coding retained_intron MGP_C3HHeJ_T0090682.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4379072 4380000 + Mmp12 protein_coding processed_transcript MGP_C3HHeJ_T0090683.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4379072 4395855 + MGP_C3HHeJ_P0090683 Mmp12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090684.1 MGP_C3HHeJ_G0034003.1 mouse_genomes_project 9 4379181 4395294 + MGP_C3HHeJ_P0090684 Mmp12 protein_coding protein_coding MGP_C3HHeJ_T0090740.1 MGP_C3HHeJ_G0034026.1 mouse_genomes_project 9 10568715 10570103 + MGP_C3HHeJ_P0090740 Phxr4 protein_coding protein_coding MGP_C3HHeJ_T0094217.1 MGP_C3HHeJ_G0034990.1 mouse_genomes_project 9 109558985 109565409 - MGP_C3HHeJ_P0094217 Wdr6 protein_coding protein_coding MGP_C3HHeJ_T0015840.1 MGP_C3HHeJ_G0013944.1 mouse_genomes_project 9 57910597 57910765 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002310.1 MGP_C3HHeJ_G0002229.1 mouse_genomes_project 9 27875610 27932112 - TEC TEC MGP_C3HHeJ_T0094933.1 MGP_C3HHeJ_G0035159.1 mouse_genomes_project 9 125164024 125165756 - MGP_C3HHeJ_P0094933 Tmem158 protein_coding protein_coding MGP_C3HHeJ_T0002433.1 MGP_C3HHeJ_G0002351.1 mouse_genomes_project 9 112175875 112178678 - TEC TEC MGP_C3HHeJ_T0005353.1 MGP_C3HHeJ_G0004527.1 mouse_genomes_project 9 30468638 30477750 + Gm27201 antisense antisense MGP_C3HHeJ_T0015919.1 MGP_C3HHeJ_G0014023.1 mouse_genomes_project 9 97033949 97034643 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091621.1 MGP_C3HHeJ_G0034396.1 mouse_genomes_project 9 43127959 43143712 - MGP_C3HHeJ_P0091621 Cxcr5 protein_coding protein_coding MGP_C3HHeJ_T0091622.1 MGP_C3HHeJ_G0034396.1 mouse_genomes_project 9 43127959 43174902 - MGP_C3HHeJ_P0091622 Cxcr5 protein_coding protein_coding MGP_C3HHeJ_T0090797.1 MGP_C3HHeJ_G0034041.1 mouse_genomes_project 9 12110029 12128100 - MGP_C3HHeJ_P0090797 Izumo1r protein_coding protein_coding MGP_C3HHeJ_T0090798.1 MGP_C3HHeJ_G0034041.1 mouse_genomes_project 9 12117264 12128165 - MGP_C3HHeJ_P0090798 Izumo1r protein_coding protein_coding MGP_C3HHeJ_T0090799.1 MGP_C3HHeJ_G0034041.1 mouse_genomes_project 9 12124238 12128148 - MGP_C3HHeJ_P0090799 Izumo1r protein_coding protein_coding MGP_C3HHeJ_T0090800.1 MGP_C3HHeJ_G0034041.1 mouse_genomes_project 9 12124243 12127972 - MGP_C3HHeJ_P0090800 Izumo1r protein_coding protein_coding MGP_C3HHeJ_T0090801.1 MGP_C3HHeJ_G0034041.1 mouse_genomes_project 9 12124985 12127970 - MGP_C3HHeJ_P0090801 Izumo1r protein_coding protein_coding MGP_C3HHeJ_T0011647.1 MGP_C3HHeJ_G0009780.1 mouse_genomes_project 9 88807712 88808002 + Gm26461 misc_RNA misc_RNA MGP_C3HHeJ_T0009151.1 MGP_C3HHeJ_G0007348.1 mouse_genomes_project 9 44082673 44098193 - 4833428L15Rik lincRNA lincRNA MGP_C3HHeJ_T0091948.1 MGP_C3HHeJ_G0034496.1 mouse_genomes_project 9 52537443 52567826 - MGP_C3HHeJ_P0091948 Acat1 protein_coding protein_coding MGP_C3HHeJ_T0091949.1 MGP_C3HHeJ_G0034496.1 mouse_genomes_project 9 52539408 52540679 - Acat1 protein_coding processed_transcript MGP_C3HHeJ_T0091950.1 MGP_C3HHeJ_G0034496.1 mouse_genomes_project 9 52554567 52567774 - Acat1 protein_coding retained_intron MGP_C3HHeJ_T0090997.1 MGP_C3HHeJ_G0034133.1 mouse_genomes_project 9 18949444 18957487 + MGP_C3HHeJ_P0090997 Qtrt1 protein_coding protein_coding MGP_C3HHeJ_T0090839.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15640720 15720448 - MGP_C3HHeJ_P0090839 Naalad2 protein_coding protein_coding MGP_C3HHeJ_T0090840.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15641789 15705531 - MGP_C3HHeJ_P0090840 Naalad2 protein_coding protein_coding MGP_C3HHeJ_T0090841.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15641790 15711589 - MGP_C3HHeJ_P0090841 Naalad2 protein_coding protein_coding MGP_C3HHeJ_T0090842.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15700332 15705417 - Naalad2 protein_coding retained_intron MGP_C3HHeJ_T0090843.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15704552 15728610 - MGP_C3HHeJ_P0090843 Naalad2 protein_coding protein_coding MGP_C3HHeJ_T0090844.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15705323 15730442 - MGP_C3HHeJ_P0090844 Naalad2 protein_coding protein_coding MGP_C3HHeJ_T0090845.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15707548 15730463 - MGP_C3HHeJ_P0090845 Naalad2 protein_coding protein_coding MGP_C3HHeJ_T0090846.1 MGP_C3HHeJ_G0034056.1 mouse_genomes_project 9 15707654 15730444 - Naalad2 protein_coding processed_transcript MGP_C3HHeJ_T0091833.1 MGP_C3HHeJ_G0034463.1 mouse_genomes_project 9 49457324 49464617 + MGP_C3HHeJ_P0091833 Il18 protein_coding protein_coding MGP_C3HHeJ_T0091834.1 MGP_C3HHeJ_G0034463.1 mouse_genomes_project 9 49457324 49464617 + MGP_C3HHeJ_P0091834 Il18 protein_coding protein_coding MGP_C3HHeJ_T0094944.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125615058 125639873 - Lztfl1 protein_coding processed_transcript MGP_C3HHeJ_T0094945.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125617654 125639776 - MGP_C3HHeJ_P0094945 Lztfl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094946.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125621664 125639854 - MGP_C3HHeJ_P0094946 Lztfl1 protein_coding protein_coding MGP_C3HHeJ_T0094947.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125627691 125629700 - Lztfl1 protein_coding retained_intron MGP_C3HHeJ_T0094948.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125629439 125639801 - Lztfl1 protein_coding processed_transcript MGP_C3HHeJ_T0094949.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125634726 125639795 - Lztfl1 protein_coding processed_transcript MGP_C3HHeJ_T0094950.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125634730 125639797 - Lztfl1 protein_coding processed_transcript MGP_C3HHeJ_T0094951.1 MGP_C3HHeJ_G0035166.1 mouse_genomes_project 9 125637133 125639830 - Lztfl1 protein_coding retained_intron MGP_C3HHeJ_T0091373.1 MGP_C3HHeJ_G0034258.1 mouse_genomes_project 9 36063682 36064730 + MGP_C3HHeJ_P0091373 Olfr876 protein_coding protein_coding MGP_C3HHeJ_T0091167.1 MGP_C3HHeJ_G0034194.1 mouse_genomes_project 9 28775998 28799234 - MGP_C3HHeJ_P0091167 Adamts15 protein_coding protein_coding MGP_C3HHeJ_T0100958.1 MGP_C3HHeJ_G0039152.1 mouse_genomes_project 9 33152179 33152323 + Gm24262 snoRNA snoRNA MGP_C3HHeJ_T0093865.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108496200 108501030 + MGP_C3HHeJ_P0093865 Hyal2 protein_coding protein_coding MGP_C3HHeJ_T0093866.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108496200 108498645 + MGP_C3HHeJ_P0093866 Hyal2 protein_coding protein_coding MGP_C3HHeJ_T0093867.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108497367 108501027 + MGP_C3HHeJ_P0093867 Hyal2 protein_coding protein_coding MGP_C3HHeJ_T0093868.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108497391 108500214 + MGP_C3HHeJ_P0093868 Hyal2 protein_coding protein_coding MGP_C3HHeJ_T0093869.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108497645 108498863 + MGP_C3HHeJ_P0093869 Hyal2 protein_coding protein_coding MGP_C3HHeJ_T0093870.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108498055 108501023 + MGP_C3HHeJ_P0093870 Hyal2 protein_coding protein_coding MGP_C3HHeJ_T0093871.1 MGP_C3HHeJ_G0034942.1 mouse_genomes_project 9 108499460 108500454 + Hyal2 protein_coding retained_intron MGP_C3HHeJ_T0093356.1 MGP_C3HHeJ_G0034840.1 mouse_genomes_project 9 99108291 99111887 + Copb2 protein_coding retained_intron MGP_C3HHeJ_T0093357.1 MGP_C3HHeJ_G0034840.1 mouse_genomes_project 9 99108301 99132861 + MGP_C3HHeJ_P0093357 Copb2 protein_coding protein_coding MGP_C3HHeJ_T0093358.1 MGP_C3HHeJ_G0034840.1 mouse_genomes_project 9 99124429 99125701 + Copb2 protein_coding retained_intron MGP_C3HHeJ_T0093359.1 MGP_C3HHeJ_G0034840.1 mouse_genomes_project 9 99131323 99132308 + Copb2 protein_coding retained_intron MGP_C3HHeJ_T0093360.1 MGP_C3HHeJ_G0034840.1 mouse_genomes_project 9 99131824 99132510 + Copb2 protein_coding retained_intron MGP_C3HHeJ_T0093361.1 MGP_C3HHeJ_G0034840.1 mouse_genomes_project 9 99132025 99132740 + Copb2 protein_coding retained_intron MGP_C3HHeJ_T0015913.1 MGP_C3HHeJ_G0014017.1 mouse_genomes_project 9 94850244 94850590 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091210.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32491073 32494400 + MGP_C3HHeJ_P0091210 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091211.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32491304 32516011 + Kirrel3 protein_coding processed_transcript MGP_C3HHeJ_T0091212.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32491305 33057204 + MGP_C3HHeJ_P0091212 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091213.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32493974 33058640 + MGP_C3HHeJ_P0091213 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091214.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32494036 33052793 + MGP_C3HHeJ_P0091214 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091215.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32494036 33058640 + MGP_C3HHeJ_P0091215 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091216.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32494069 33058234 + MGP_C3HHeJ_P0091216 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091217.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 32494177 33058234 + MGP_C3HHeJ_P0091217 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0091218.1 MGP_C3HHeJ_G0034208.1 mouse_genomes_project 9 33038253 33052791 + MGP_C3HHeJ_P0091218 Kirrel3 protein_coding protein_coding MGP_C3HHeJ_T0015853.1 MGP_C3HHeJ_G0013957.1 mouse_genomes_project 9 71923305 71924110 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093457.1 MGP_C3HHeJ_G0034865.1 mouse_genomes_project 9 101766924 101790348 + MGP_C3HHeJ_P0093457 Msl2 protein_coding protein_coding MGP_C3HHeJ_T0093458.1 MGP_C3HHeJ_G0034865.1 mouse_genomes_project 9 101767593 101792541 + MGP_C3HHeJ_P0093458 Msl2 protein_coding protein_coding MGP_C3HHeJ_T0009268.1 MGP_C3HHeJ_G0007439.1 mouse_genomes_project 9 124192021 124196817 - Gm26797 lincRNA lincRNA MGP_C3HHeJ_T0005433.1 MGP_C3HHeJ_G0004578.1 mouse_genomes_project 9 96511701 96525313 - Gm28085 antisense antisense MGP_C3HHeJ_T0093044.1 MGP_C3HHeJ_G0034775.1 mouse_genomes_project 9 86532994 86699670 - MGP_C3HHeJ_P0093044 Ube2cbp protein_coding protein_coding MGP_C3HHeJ_T0093045.1 MGP_C3HHeJ_G0034775.1 mouse_genomes_project 9 86533430 86699670 - MGP_C3HHeJ_P0093045 Ube2cbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0018308.1 MGP_C3HHeJ_G0015500.1 mouse_genomes_project 9 62837110 62935748 + Gm16759 processed_transcript lincRNA MGP_C3HHeJ_T0018309.1 MGP_C3HHeJ_G0015500.1 mouse_genomes_project 9 62837883 63011701 + Gm16759 processed_transcript lincRNA MGP_C3HHeJ_T0018310.1 MGP_C3HHeJ_G0015500.1 mouse_genomes_project 9 62837890 62864415 + Gm16759 processed_transcript lincRNA MGP_C3HHeJ_T0018311.1 MGP_C3HHeJ_G0015500.1 mouse_genomes_project 9 62973161 63010029 + Gm16759 processed_transcript processed_transcript MGP_C3HHeJ_T0090866.1 MGP_C3HHeJ_G0034071.1 mouse_genomes_project 9 16483003 16483958 + MGP_C3HHeJ_P0090866 Olfr836 protein_coding protein_coding MGP_C3HHeJ_T0090687.1 MGP_C3HHeJ_G0034006.1 mouse_genomes_project 9 4538449 4546011 + MGP_C3HHeJ_P0090687 Mmp10 protein_coding protein_coding MGP_C3HHeJ_T0002329.1 MGP_C3HHeJ_G0002248.1 mouse_genomes_project 9 71788957 71791383 - TEC TEC MGP_C3HHeJ_T0092567.1 MGP_C3HHeJ_G0034671.1 mouse_genomes_project 9 67525148 67674426 + MGP_C3HHeJ_P0092567 Vps13c protein_coding protein_coding MGP_C3HHeJ_T0092568.1 MGP_C3HHeJ_G0034671.1 mouse_genomes_project 9 67525179 67662124 + MGP_C3HHeJ_P0092568 Vps13c protein_coding unknown_likely_coding MGP_C3HHeJ_T0091914.1 MGP_C3HHeJ_G0034480.1 mouse_genomes_project 9 50017922 50021619 + MGP_C3HHeJ_P0091914 Btg4 protein_coding protein_coding MGP_C3HHeJ_T0093422.1 MGP_C3HHeJ_G0034860.1 mouse_genomes_project 9 101117918 101149897 - MGP_C3HHeJ_P0093422 Il20rb protein_coding protein_coding MGP_C3HHeJ_T0093423.1 MGP_C3HHeJ_G0034860.1 mouse_genomes_project 9 101117920 101128362 - Il20rb protein_coding retained_intron MGP_C3HHeJ_T0093424.1 MGP_C3HHeJ_G0034860.1 mouse_genomes_project 9 101118003 101122006 - Il20rb protein_coding processed_transcript MGP_C3HHeJ_T0093425.1 MGP_C3HHeJ_G0034860.1 mouse_genomes_project 9 101118760 101121978 - Il20rb protein_coding retained_intron MGP_C3HHeJ_T0093426.1 MGP_C3HHeJ_G0034860.1 mouse_genomes_project 9 101119306 101132060 - Il20rb protein_coding processed_transcript MGP_C3HHeJ_T0093427.1 MGP_C3HHeJ_G0034860.1 mouse_genomes_project 9 101127194 101149494 - Il20rb protein_coding retained_intron MGP_C3HHeJ_T0002356.1 MGP_C3HHeJ_G0002275.1 mouse_genomes_project 9 83631283 83633904 + TEC TEC MGP_C3HHeJ_T0009158.1 MGP_C3HHeJ_G0007353.1 mouse_genomes_project 9 55668937 55676734 + Gm26868 lincRNA lincRNA MGP_C3HHeJ_T0009176.1 MGP_C3HHeJ_G0007367.1 mouse_genomes_project 9 69472215 69548163 + B230323A14Rik lincRNA lincRNA MGP_C3HHeJ_T0009177.1 MGP_C3HHeJ_G0007367.1 mouse_genomes_project 9 69474611 69547517 + B230323A14Rik lincRNA lincRNA MGP_C3HHeJ_T0091933.1 MGP_C3HHeJ_G0034490.1 mouse_genomes_project 9 52030998 52192687 - MGP_C3HHeJ_P0091933 Ddx10 protein_coding protein_coding MGP_C3HHeJ_T0090884.1 MGP_C3HHeJ_G0034089.1 mouse_genomes_project 9 17501099 17502176 - MGP_C3HHeJ_P0090884 Olfr866 protein_coding protein_coding MGP_C3HHeJ_T0091281.1 MGP_C3HHeJ_G0034227.1 mouse_genomes_project 9 33809666 33811729 - MGP_C3HHeJ_P0091281 D730048I06Rik protein_coding protein_coding MGP_C3HHeJ_T0002350.1 MGP_C3HHeJ_G0002269.1 mouse_genomes_project 9 75972147 75975596 + TEC TEC MGP_C3HHeJ_T0002422.1 MGP_C3HHeJ_G0002340.1 mouse_genomes_project 9 109430891 109431906 + TEC TEC MGP_C3HHeJ_T0010945.1 MGP_C3HHeJ_G0009078.1 mouse_genomes_project 9 4812787 4812838 + Mir5618 miRNA miRNA MGP_C3HHeJ_T0015937.1 MGP_C3HHeJ_G0014041.1 mouse_genomes_project 9 104149583 104149960 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011648.1 MGP_C3HHeJ_G0009781.1 mouse_genomes_project 9 90330977 90331245 + Gm23759 misc_RNA misc_RNA MGP_C3HHeJ_T0091532.1 MGP_C3HHeJ_G0034362.1 mouse_genomes_project 9 41509549 41654062 - MGP_C3HHeJ_P0091532 Arhgef12 protein_coding protein_coding MGP_C3HHeJ_T0091533.1 MGP_C3HHeJ_G0034362.1 mouse_genomes_project 9 41509550 41653830 - MGP_C3HHeJ_P0091533 Arhgef12 protein_coding protein_coding MGP_C3HHeJ_T0009234.1 MGP_C3HHeJ_G0007414.1 mouse_genomes_project 9 103267729 103281858 + Gm29387 lincRNA lincRNA MGP_C3HHeJ_T0010980.1 MGP_C3HHeJ_G0009113.1 mouse_genomes_project 9 53692675 53692744 + Mir5710 miRNA miRNA MGP_C3HHeJ_T0011015.1 MGP_C3HHeJ_G0009148.1 mouse_genomes_project 9 111904290 111904407 - Mir8107 miRNA miRNA MGP_C3HHeJ_T0100999.1 MGP_C3HHeJ_G0039193.1 mouse_genomes_project 9 102081554 102081686 - Gm24638 snoRNA snoRNA MGP_C3HHeJ_T0010963.1 MGP_C3HHeJ_G0009096.1 mouse_genomes_project 9 37385677 37385769 - Gm25529 miRNA miRNA MGP_C3HHeJ_T0093229.1 MGP_C3HHeJ_G0034816.1 mouse_genomes_project 9 95105282 95682542 + MGP_C3HHeJ_P0093229 Slc9a9 protein_coding protein_coding MGP_C3HHeJ_T0093230.1 MGP_C3HHeJ_G0034816.1 mouse_genomes_project 9 95105305 95157885 + Slc9a9 protein_coding processed_transcript MGP_C3HHeJ_T0093231.1 MGP_C3HHeJ_G0034816.1 mouse_genomes_project 9 95366210 95682549 + MGP_C3HHeJ_P0093231 Slc9a9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0093232.1 MGP_C3HHeJ_G0034816.1 mouse_genomes_project 9 95573999 95576867 + Slc9a9 protein_coding retained_intron MGP_C3HHeJ_T0011654.1 MGP_C3HHeJ_G0009787.1 mouse_genomes_project 9 114801532 114801829 + Gm22492 misc_RNA misc_RNA MGP_C3HHeJ_T0090646.1 MGP_C3HHeJ_G0033991.1 mouse_genomes_project 9 1188151 1204186 - MGP_C3HHeJ_P0090646 Aasdhppt protein_coding protein_coding MGP_C3HHeJ_T0092331.1 MGP_C3HHeJ_G0034607.1 mouse_genomes_project 9 62256656 62269832 + MGP_C3HHeJ_P0092331 Cln6 protein_coding protein_coding MGP_C3HHeJ_T0092332.1 MGP_C3HHeJ_G0034607.1 mouse_genomes_project 9 62256663 62263844 + MGP_C3HHeJ_P0092332 Cln6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092333.1 MGP_C3HHeJ_G0034607.1 mouse_genomes_project 9 62263840 62268537 + MGP_C3HHeJ_P0092333 Cln6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092334.1 MGP_C3HHeJ_G0034607.1 mouse_genomes_project 9 62264858 62268988 + MGP_C3HHeJ_P0092334 Cln6 protein_coding protein_coding MGP_C3HHeJ_T0094900.1 MGP_C3HHeJ_G0035147.1 mouse_genomes_project 9 124718626 124725008 - MGP_C3HHeJ_P0094900 Gm35549 protein_coding protein_coding MGP_C3HHeJ_T0094901.1 MGP_C3HHeJ_G0035147.1 mouse_genomes_project 9 124718626 124725008 - MGP_C3HHeJ_P0094901 Gm35549 protein_coding protein_coding MGP_C3HHeJ_T0094902.1 MGP_C3HHeJ_G0035147.1 mouse_genomes_project 9 124718626 124725008 - MGP_C3HHeJ_P0094902 Gm35549 protein_coding protein_coding MGP_C3HHeJ_T0091061.1 MGP_C3HHeJ_G0034156.1 mouse_genomes_project 9 19633044 19649891 - MGP_C3HHeJ_P0091061 Zfp653 protein_coding protein_coding MGP_C3HHeJ_T0091062.1 MGP_C3HHeJ_G0034156.1 mouse_genomes_project 9 19633044 19649891 - MGP_C3HHeJ_P0091062 Zfp653 protein_coding protein_coding MGP_C3HHeJ_T0015924.1 MGP_C3HHeJ_G0014028.1 mouse_genomes_project 9 97756578 97756864 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100996.1 MGP_C3HHeJ_G0039190.1 mouse_genomes_project 9 100360325 100360452 - Gm23949 snoRNA snoRNA MGP_C3HHeJ_T0009202.1 MGP_C3HHeJ_G0007389.1 mouse_genomes_project 9 88508759 88511901 + Gm28231 lincRNA lincRNA MGP_C3HHeJ_T0002363.1 MGP_C3HHeJ_G0002281.1 mouse_genomes_project 9 87045312 87047616 - TEC TEC MGP_C3HHeJ_T0093368.1 MGP_C3HHeJ_G0034846.1 mouse_genomes_project 9 99515577 99516818 + MGP_C3HHeJ_P0093368 Foxl2 protein_coding protein_coding MGP_C3HHeJ_T0094271.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109854681 109855682 + Slc26a6 protein_coding processed_transcript MGP_C3HHeJ_T0094272.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109854746 109863545 + MGP_C3HHeJ_P0094272 Slc26a6 protein_coding protein_coding MGP_C3HHeJ_T0094273.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109855434 109862230 + MGP_C3HHeJ_P0094273 Slc26a6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094274.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109855434 109865511 + MGP_C3HHeJ_P0094274 Slc26a6 protein_coding protein_coding MGP_C3HHeJ_T0094275.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109855440 109863545 + MGP_C3HHeJ_P0094275 Slc26a6 protein_coding protein_coding MGP_C3HHeJ_T0094276.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109855471 109863545 + Slc26a6 protein_coding retained_intron MGP_C3HHeJ_T0094277.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109855491 109863545 + Slc26a6 protein_coding retained_intron MGP_C3HHeJ_T0094278.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109855532 109863545 + MGP_C3HHeJ_P0094278 Slc26a6 protein_coding protein_coding MGP_C3HHeJ_T0094279.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109856068 109866006 + MGP_C3HHeJ_P0094279 Slc26a6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0094280.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109857062 109863545 + MGP_C3HHeJ_P0094280 Slc26a6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094281.1 MGP_C3HHeJ_G0034998.1 mouse_genomes_project 9 109865362 109866002 + MGP_C3HHeJ_P0094281 Slc26a6 protein_coding protein_coding MGP_C3HHeJ_T0010988.1 MGP_C3HHeJ_G0009121.1 mouse_genomes_project 9 67409771 67409835 - Mir7241 miRNA miRNA MGP_C3HHeJ_T0093760.1 MGP_C3HHeJ_G0034922.1 mouse_genomes_project 9 107476650 107480024 - MGP_C3HHeJ_P0093760 Iqcf4 protein_coding protein_coding MGP_C3HHeJ_T0010962.1 MGP_C3HHeJ_G0009095.1 mouse_genomes_project 9 30007442 30007568 + Gm44453 miRNA miRNA MGP_C3HHeJ_T0018314.1 MGP_C3HHeJ_G0015503.1 mouse_genomes_project 9 72199184 72207769 + Gm27230 processed_transcript lincRNA MGP_C3HHeJ_T0018315.1 MGP_C3HHeJ_G0015503.1 mouse_genomes_project 9 72199190 72205964 + Gm27230 processed_transcript lincRNA MGP_C3HHeJ_T0018316.1 MGP_C3HHeJ_G0015503.1 mouse_genomes_project 9 72206677 72207351 + Gm27230 processed_transcript retained_intron MGP_C3HHeJ_T0092084.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218400 56231316 + MGP_C3HHeJ_P0092084 Man2c1 protein_coding protein_coding MGP_C3HHeJ_T0092085.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218400 56222742 + MGP_C3HHeJ_P0092085 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092086.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218478 56229304 + MGP_C3HHeJ_P0092086 Man2c1 protein_coding protein_coding MGP_C3HHeJ_T0092087.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218478 56225382 + MGP_C3HHeJ_P0092087 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092088.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218480 56223717 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092089.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218480 56230797 + MGP_C3HHeJ_P0092089 Man2c1 protein_coding protein_coding MGP_C3HHeJ_T0092090.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218487 56218964 + Man2c1 protein_coding processed_transcript MGP_C3HHeJ_T0092091.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218496 56226396 + MGP_C3HHeJ_P0092091 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092092.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218496 56230798 + MGP_C3HHeJ_P0092092 Man2c1 protein_coding protein_coding MGP_C3HHeJ_T0092093.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56218496 56227991 + MGP_C3HHeJ_P0092093 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092094.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56219084 56223691 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092095.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56223529 56226116 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092096.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56224177 56225589 + MGP_C3HHeJ_P0092096 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092097.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56225330 56226430 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092098.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56226635 56229322 + MGP_C3HHeJ_P0092098 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092099.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56227018 56229005 + MGP_C3HHeJ_P0092099 Man2c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092100.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56227460 56228587 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092101.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56228092 56230807 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092102.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56228092 56229306 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092103.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56228470 56229773 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092104.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56228871 56230801 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092105.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56229276 56230807 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0092106.1 MGP_C3HHeJ_G0034542.1 mouse_genomes_project 9 56229971 56230801 + Man2c1 protein_coding retained_intron MGP_C3HHeJ_T0093006.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83566573 83604906 - MGP_C3HHeJ_P0093006 Lca5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093007.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83567660 83624868 - MGP_C3HHeJ_P0093007 Lca5 protein_coding protein_coding MGP_C3HHeJ_T0093008.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83569715 83624768 - MGP_C3HHeJ_P0093008 Lca5 protein_coding protein_coding MGP_C3HHeJ_T0093009.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83577771 83579006 - Lca5 protein_coding retained_intron MGP_C3HHeJ_T0093010.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83600191 83624834 - Lca5 protein_coding retained_intron MGP_C3HHeJ_T0093011.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83601167 83613427 - MGP_C3HHeJ_P0093011 Lca5 protein_coding protein_coding MGP_C3HHeJ_T0093012.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83601372 83604914 - Lca5 protein_coding retained_intron MGP_C3HHeJ_T0093013.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83604693 83624857 - MGP_C3HHeJ_P0093013 Lca5 protein_coding protein_coding MGP_C3HHeJ_T0093014.1 MGP_C3HHeJ_G0034767.1 mouse_genomes_project 9 83604784 83624803 - Lca5 protein_coding processed_transcript MGP_C3HHeJ_T0091425.1 MGP_C3HHeJ_G0034303.1 mouse_genomes_project 9 37315211 37316144 - MGP_C3HHeJ_P0091425 Olfr934 protein_coding protein_coding MGP_C3HHeJ_T0002342.1 MGP_C3HHeJ_G0002261.1 mouse_genomes_project 9 72699125 72701021 + TEC TEC MGP_C3HHeJ_T0005438.1 MGP_C3HHeJ_G0004582.1 mouse_genomes_project 9 97873087 97900648 + Gm15891 antisense antisense MGP_C3HHeJ_T0091360.1 MGP_C3HHeJ_G0034250.1 mouse_genomes_project 9 35775260 35780191 + MGP_C3HHeJ_P0091360 Vsig2 protein_coding protein_coding MGP_C3HHeJ_T0010995.1 MGP_C3HHeJ_G0009128.1 mouse_genomes_project 9 72836632 72836754 + Gm27353 miRNA miRNA MGP_C3HHeJ_T0093364.1 MGP_C3HHeJ_G0034842.1 mouse_genomes_project 9 99376161 99391131 + MGP_C3HHeJ_P0093364 protein_coding protein_coding MGP_C3HHeJ_T0093027.1 MGP_C3HHeJ_G0034771.1 mouse_genomes_project 9 84134634 84334417 + MGP_C3HHeJ_P0093027 Bckdhb protein_coding protein_coding MGP_C3HHeJ_T0093028.1 MGP_C3HHeJ_G0034771.1 mouse_genomes_project 9 84134639 84334417 + MGP_C3HHeJ_P0093028 Bckdhb protein_coding protein_coding MGP_C3HHeJ_T0093029.1 MGP_C3HHeJ_G0034771.1 mouse_genomes_project 9 84153420 84334418 + MGP_C3HHeJ_P0093029 Bckdhb protein_coding protein_coding MGP_C3HHeJ_T0093030.1 MGP_C3HHeJ_G0034771.1 mouse_genomes_project 9 84241978 84334376 + Bckdhb protein_coding processed_transcript MGP_C3HHeJ_T0093031.1 MGP_C3HHeJ_G0034771.1 mouse_genomes_project 9 84252487 84334417 + Bckdhb protein_coding processed_transcript MGP_C3HHeJ_T0093032.1 MGP_C3HHeJ_G0034771.1 mouse_genomes_project 9 84317037 84334418 + Bckdhb protein_coding processed_transcript MGP_C3HHeJ_T0101490.1 MGP_C3HHeJ_G0035086.1 mouse_genomes_project 9 119564815 119693790 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101491.1 MGP_C3HHeJ_G0035086.1 mouse_genomes_project 9 119601415 119693952 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101492.1 MGP_C3HHeJ_G0035086.1 mouse_genomes_project 9 119651206 119693952 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101493.1 MGP_C3HHeJ_G0035086.1 mouse_genomes_project 9 119692612 119726251 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0005422.1 MGP_C3HHeJ_G0004575.1 mouse_genomes_project 9 96336957 96339057 - 1700065D16Rik antisense antisense MGP_C3HHeJ_T0005423.1 MGP_C3HHeJ_G0004575.1 mouse_genomes_project 9 96336959 96339862 - 1700065D16Rik antisense antisense MGP_C3HHeJ_T0005424.1 MGP_C3HHeJ_G0004575.1 mouse_genomes_project 9 96336959 96339411 - 1700065D16Rik antisense antisense MGP_C3HHeJ_T0005425.1 MGP_C3HHeJ_G0004575.1 mouse_genomes_project 9 96336960 96339411 - 1700065D16Rik antisense antisense MGP_C3HHeJ_T0005426.1 MGP_C3HHeJ_G0004575.1 mouse_genomes_project 9 96337091 96339860 - 1700065D16Rik antisense antisense MGP_C3HHeJ_T0094095.1 MGP_C3HHeJ_G0034972.1 mouse_genomes_project 9 109244896 109252069 + MGP_C3HHeJ_P0094095 Nicn1 protein_coding protein_coding MGP_C3HHeJ_T0094096.1 MGP_C3HHeJ_G0034972.1 mouse_genomes_project 9 109244911 109249115 + Nicn1 protein_coding retained_intron MGP_C3HHeJ_T0094097.1 MGP_C3HHeJ_G0034972.1 mouse_genomes_project 9 109244922 109249083 + Nicn1 protein_coding processed_transcript MGP_C3HHeJ_T0094098.1 MGP_C3HHeJ_G0034972.1 mouse_genomes_project 9 109249425 109250351 + Nicn1 protein_coding retained_intron MGP_C3HHeJ_T0092562.1 MGP_C3HHeJ_G0034668.1 mouse_genomes_project 9 66866184 67059189 - MGP_C3HHeJ_P0092562 Tln2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092563.1 MGP_C3HHeJ_G0034668.1 mouse_genomes_project 9 66866192 67225657 - MGP_C3HHeJ_P0092563 Tln2 protein_coding protein_coding MGP_C3HHeJ_T0092564.1 MGP_C3HHeJ_G0034668.1 mouse_genomes_project 9 66870210 67206785 - MGP_C3HHeJ_P0092564 Tln2 protein_coding protein_coding MGP_C3HHeJ_T0009236.1 MGP_C3HHeJ_G0007416.1 mouse_genomes_project 9 103484130 103484390 - Gm28621 lincRNA lincRNA MGP_C3HHeJ_T0094726.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120774472 120793126 + Vill protein_coding retained_intron MGP_C3HHeJ_T0094727.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120774472 120779747 + Vill protein_coding retained_intron MGP_C3HHeJ_T0094728.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120774472 120793120 + MGP_C3HHeJ_P0094728 Vill protein_coding protein_coding MGP_C3HHeJ_T0094729.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120774496 120792927 + MGP_C3HHeJ_P0094729 Vill protein_coding protein_coding MGP_C3HHeJ_T0094730.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120774559 120780118 + MGP_C3HHeJ_P0094730 Vill protein_coding protein_coding MGP_C3HHeJ_T0094731.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120785059 120792927 + MGP_C3HHeJ_P0094731 Vill protein_coding protein_coding MGP_C3HHeJ_T0094732.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120785065 120792938 + MGP_C3HHeJ_P0094732 Vill protein_coding protein_coding MGP_C3HHeJ_T0094733.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120785066 120791668 + MGP_C3HHeJ_P0094733 Vill protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094734.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120785069 120788412 + MGP_C3HHeJ_P0094734 Vill protein_coding protein_coding MGP_C3HHeJ_T0094735.1 MGP_C3HHeJ_G0035093.1 mouse_genomes_project 9 120785093 120786953 + Vill protein_coding processed_transcript MGP_C3HHeJ_T0091459.1 MGP_C3HHeJ_G0034331.1 mouse_genomes_project 9 38221283 38222207 + MGP_C3HHeJ_P0091459 Olfr971 protein_coding protein_coding MGP_C3HHeJ_T0091057.1 MGP_C3HHeJ_G0034154.1 mouse_genomes_project 9 19575932 19588336 + MGP_C3HHeJ_P0091057 Prkcsh protein_coding protein_coding MGP_C3HHeJ_T0091058.1 MGP_C3HHeJ_G0034154.1 mouse_genomes_project 9 19575932 19588336 + MGP_C3HHeJ_P0091058 Prkcsh protein_coding protein_coding MGP_C3HHeJ_T0094608.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400591 113524945 - MGP_C3HHeJ_P0094608 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094609.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400591 113523142 - MGP_C3HHeJ_P0094609 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094610.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400591 113522913 - MGP_C3HHeJ_P0094610 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094611.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400591 113524945 - MGP_C3HHeJ_P0094611 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094612.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400734 113522956 - MGP_C3HHeJ_P0094612 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094613.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400736 113570331 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0094614.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400758 113570924 - MGP_C3HHeJ_P0094614 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094615.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113400760 113568413 - MGP_C3HHeJ_P0094615 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094616.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113401237 113524826 - MGP_C3HHeJ_P0094616 Arpp21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094617.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113452868 113553321 - MGP_C3HHeJ_P0094617 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094618.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113491969 113570749 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0094619.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113492982 113570924 - MGP_C3HHeJ_P0094619 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094620.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113498188 113553411 - MGP_C3HHeJ_P0094620 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094621.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113512820 113569535 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0094622.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113516297 113553386 - MGP_C3HHeJ_P0094622 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094623.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113516343 113553386 - MGP_C3HHeJ_P0094623 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094624.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113516381 113569723 - MGP_C3HHeJ_P0094624 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094625.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113517262 113525105 - MGP_C3HHeJ_P0094625 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094626.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113517262 113525108 - MGP_C3HHeJ_P0094626 Arpp21 protein_coding protein_coding MGP_C3HHeJ_T0094627.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113518202 113525083 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0094628.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113518208 113525128 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094629.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113518237 113525105 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094630.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113519882 113525059 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0094631.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113519912 113523286 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094632.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113519955 113523142 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094633.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113520209 113523129 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0094634.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113522921 113567814 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094635.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113524770 113569780 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094636.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113524807 113571840 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094637.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113524840 113525619 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094638.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113525108 113525653 - Arpp21 protein_coding processed_transcript MGP_C3HHeJ_T0094639.1 MGP_C3HHeJ_G0035060.1 mouse_genomes_project 9 113541189 113553364 - Arpp21 protein_coding retained_intron MGP_C3HHeJ_T0091807.1 MGP_C3HHeJ_G0034449.1 mouse_genomes_project 9 47740092 47769440 - MGP_C3HHeJ_P0091807 Htr3b protein_coding protein_coding MGP_C3HHeJ_T0091278.1 MGP_C3HHeJ_G0034224.1 mouse_genomes_project 9 33763414 33764618 + MGP_C3HHeJ_P0091278 Gm17677 protein_coding protein_coding MGP_C3HHeJ_T0093937.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108612070 108640937 - MGP_C3HHeJ_P0093937 Sema3f protein_coding protein_coding MGP_C3HHeJ_T0093938.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108612989 108636019 - MGP_C3HHeJ_P0093938 Sema3f protein_coding protein_coding MGP_C3HHeJ_T0093939.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108613693 108615334 - Sema3f protein_coding retained_intron MGP_C3HHeJ_T0093940.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108613693 108640481 - MGP_C3HHeJ_P0093940 Sema3f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093941.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108614563 108617828 - MGP_C3HHeJ_P0093941 Sema3f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093942.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108614579 108615370 - Sema3f protein_coding retained_intron MGP_C3HHeJ_T0093943.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108614702 108615344 - Sema3f protein_coding retained_intron MGP_C3HHeJ_T0093944.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108617785 108623222 - Sema3f protein_coding processed_transcript MGP_C3HHeJ_T0093945.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108618252 108623150 - MGP_C3HHeJ_P0093945 Sema3f protein_coding protein_coding MGP_C3HHeJ_T0093946.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108618266 108620427 - Sema3f protein_coding retained_intron MGP_C3HHeJ_T0093947.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108618836 108639942 - MGP_C3HHeJ_P0093947 Sema3f protein_coding protein_coding MGP_C3HHeJ_T0093948.1 MGP_C3HHeJ_G0034951.1 mouse_genomes_project 9 108620195 108623211 - MGP_C3HHeJ_P0093948 Sema3f protein_coding protein_coding MGP_C3HHeJ_T0015951.1 MGP_C3HHeJ_G0014055.1 mouse_genomes_project 9 112364630 112364983 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092013.1 MGP_C3HHeJ_G0034520.1 mouse_genomes_project 9 54026580 54049115 - MGP_C3HHeJ_P0092013 Chrnb4 protein_coding protein_coding MGP_C3HHeJ_T0091397.1 MGP_C3HHeJ_G0034281.1 mouse_genomes_project 9 36751683 36752739 + MGP_C3HHeJ_P0091397 Olfr902 protein_coding protein_coding MGP_C3HHeJ_T0094353.1 MGP_C3HHeJ_G0035011.1 mouse_genomes_project 9 110103917 110131113 - MGP_C3HHeJ_P0094353 Fbxw21 protein_coding protein_coding MGP_C3HHeJ_T0094354.1 MGP_C3HHeJ_G0035011.1 mouse_genomes_project 9 110114128 110131112 - MGP_C3HHeJ_P0094354 Fbxw21 protein_coding protein_coding MGP_C3HHeJ_T0092827.1 MGP_C3HHeJ_G0034721.1 mouse_genomes_project 9 75320748 75322022 - MGP_C3HHeJ_P0092827 A130057D12Rik protein_coding protein_coding MGP_C3HHeJ_T0094684.1 MGP_C3HHeJ_G0035082.1 mouse_genomes_project 9 116792262 116864402 - MGP_C3HHeJ_P0094684 Stt3b protein_coding protein_coding MGP_C3HHeJ_T0015827.1 MGP_C3HHeJ_G0013931.1 mouse_genomes_project 9 33293571 33294000 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093700.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107339205 107345410 - MGP_C3HHeJ_P0093700 Acy1 protein_coding protein_coding MGP_C3HHeJ_T0093701.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107339208 107345268 - Acy1 protein_coding retained_intron MGP_C3HHeJ_T0093702.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107339214 107340918 - Acy1 protein_coding retained_intron MGP_C3HHeJ_T0093703.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107340923 107343472 - Acy1 protein_coding retained_intron MGP_C3HHeJ_T0093704.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107342055 107345293 - MGP_C3HHeJ_P0093704 Acy1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093705.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107342186 107345410 - MGP_C3HHeJ_P0093705 Acy1 protein_coding protein_coding MGP_C3HHeJ_T0093706.1 MGP_C3HHeJ_G0034912.1 mouse_genomes_project 9 107343987 107345278 - MGP_C3HHeJ_P0093706 Acy1 protein_coding protein_coding MGP_C3HHeJ_T0011645.1 MGP_C3HHeJ_G0009778.1 mouse_genomes_project 9 76735580 76735873 - Gm23791 misc_RNA misc_RNA MGP_C3HHeJ_T0009216.1 MGP_C3HHeJ_G0007400.1 mouse_genomes_project 9 93370186 93397429 - 1700034K08Rik lincRNA lincRNA MGP_C3HHeJ_T0009217.1 MGP_C3HHeJ_G0007400.1 mouse_genomes_project 9 93370186 93380925 - 1700034K08Rik lincRNA lincRNA MGP_C3HHeJ_T0009218.1 MGP_C3HHeJ_G0007400.1 mouse_genomes_project 9 93370267 93397435 - 1700034K08Rik lincRNA lincRNA MGP_C3HHeJ_T0009219.1 MGP_C3HHeJ_G0007400.1 mouse_genomes_project 9 93393500 93397426 - 1700034K08Rik lincRNA lincRNA MGP_C3HHeJ_T0015841.1 MGP_C3HHeJ_G0013945.1 mouse_genomes_project 9 58373626 58374234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093342.1 MGP_C3HHeJ_G0034834.1 mouse_genomes_project 9 97873033 97900661 - MGP_C3HHeJ_P0093342 Trim42 protein_coding protein_coding MGP_C3HHeJ_T0015874.1 MGP_C3HHeJ_G0013978.1 mouse_genomes_project 9 77081579 77083781 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092118.1 MGP_C3HHeJ_G0034552.1 mouse_genomes_project 9 56675675 56684184 - MGP_C3HHeJ_P0092118 Mpi protein_coding protein_coding MGP_C3HHeJ_T0092119.1 MGP_C3HHeJ_G0034552.1 mouse_genomes_project 9 56679685 56683687 - Mpi protein_coding retained_intron MGP_C3HHeJ_T0092120.1 MGP_C3HHeJ_G0034552.1 mouse_genomes_project 9 56680014 56681097 - Mpi protein_coding retained_intron MGP_C3HHeJ_T0092121.1 MGP_C3HHeJ_G0034552.1 mouse_genomes_project 9 56680554 56684130 - MGP_C3HHeJ_P0092121 Mpi protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092122.1 MGP_C3HHeJ_G0034552.1 mouse_genomes_project 9 56681401 56684137 - Mpi protein_coding retained_intron MGP_C3HHeJ_T0092129.1 MGP_C3HHeJ_G0034558.1 mouse_genomes_project 9 56817143 56823869 - MGP_C3HHeJ_P0092129 Cyp1a2 protein_coding protein_coding MGP_C3HHeJ_T0015956.1 MGP_C3HHeJ_G0014060.1 mouse_genomes_project 9 122190451 122190878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009197.1 MGP_C3HHeJ_G0007386.1 mouse_genomes_project 9 83413927 83428039 - Gm27216 lincRNA lincRNA MGP_C3HHeJ_T0009198.1 MGP_C3HHeJ_G0007386.1 mouse_genomes_project 9 83413937 83428557 - Gm27216 lincRNA lincRNA MGP_C3HHeJ_T0009199.1 MGP_C3HHeJ_G0007386.1 mouse_genomes_project 9 83413954 83428504 - Gm27216 lincRNA lincRNA MGP_C3HHeJ_T0098212.1 MGP_C3HHeJ_G0036424.1 mouse_genomes_project 9 103256182 103256294 + Gm25669 rRNA rRNA MGP_C3HHeJ_T0015869.1 MGP_C3HHeJ_G0013973.1 mouse_genomes_project 9 76611854 76612230 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015866.1 MGP_C3HHeJ_G0013970.1 mouse_genomes_project 9 74963053 74964519 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093707.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347154 107355715 - MGP_C3HHeJ_P0093707 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093708.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347157 107355715 - MGP_C3HHeJ_P0093708 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093709.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347159 107355600 - MGP_C3HHeJ_P0093709 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093710.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347213 107355480 - MGP_C3HHeJ_P0093710 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093711.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347485 107353029 - MGP_C3HHeJ_P0093711 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093712.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347802 107355657 - MGP_C3HHeJ_P0093712 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093713.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107347882 107355554 - MGP_C3HHeJ_P0093713 Abhd14a protein_coding protein_coding MGP_C3HHeJ_T0093714.1 MGP_C3HHeJ_G0034913.1 mouse_genomes_project 9 107350476 107351194 - Abhd14a protein_coding retained_intron MGP_C3HHeJ_T0091284.1 MGP_C3HHeJ_G0034230.1 mouse_genomes_project 9 34032901 34145404 + MGP_C3HHeJ_P0091284 9230113P08Rik protein_coding protein_coding MGP_C3HHeJ_T0091670.1 MGP_C3HHeJ_G0034405.1 mouse_genomes_project 9 43550482 43561086 - MGP_C3HHeJ_P0091670 Atp5l protein_coding protein_coding MGP_C3HHeJ_T0100984.1 MGP_C3HHeJ_G0039178.1 mouse_genomes_project 9 74632950 74633093 + Gm22315 snoRNA snoRNA MGP_C3HHeJ_T0010978.1 MGP_C3HHeJ_G0009111.1 mouse_genomes_project 9 51048416 51048533 + Mir6244 miRNA miRNA MGP_C3HHeJ_T0092010.1 MGP_C3HHeJ_G0034518.1 mouse_genomes_project 9 53978898 54005564 + MGP_C3HHeJ_P0092010 Chrna5 protein_coding protein_coding MGP_C3HHeJ_T0092011.1 MGP_C3HHeJ_G0034518.1 mouse_genomes_project 9 53979634 54004360 + MGP_C3HHeJ_P0092011 Chrna5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0092434.1 MGP_C3HHeJ_G0034639.1 mouse_genomes_project 9 64945690 64948659 - MGP_C3HHeJ_P0092434 Kbtbd13 protein_coding protein_coding MGP_C3HHeJ_T0092425.1 MGP_C3HHeJ_G0034634.1 mouse_genomes_project 9 64746264 64780691 + MGP_C3HHeJ_P0092425 Parp16 protein_coding protein_coding MGP_C3HHeJ_T0094106.1 MGP_C3HHeJ_G0034975.1 mouse_genomes_project 9 109261967 109267068 + Rhoa protein_coding retained_intron MGP_C3HHeJ_T0094107.1 MGP_C3HHeJ_G0034975.1 mouse_genomes_project 9 109262325 109293690 + MGP_C3HHeJ_P0094107 Rhoa protein_coding protein_coding MGP_C3HHeJ_T0094108.1 MGP_C3HHeJ_G0034975.1 mouse_genomes_project 9 109262357 109287465 + MGP_C3HHeJ_P0094108 Rhoa protein_coding protein_coding MGP_C3HHeJ_T0094109.1 MGP_C3HHeJ_G0034975.1 mouse_genomes_project 9 109287108 109293696 + Rhoa protein_coding retained_intron MGP_C3HHeJ_T0093645.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490022 106529525 + Pik3r4 protein_coding retained_intron MGP_C3HHeJ_T0093646.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490025 106491798 + MGP_C3HHeJ_P0093646 Pik3r4 protein_coding protein_coding MGP_C3HHeJ_T0093647.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490052 106503363 + Pik3r4 protein_coding retained_intron MGP_C3HHeJ_T0093648.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490059 106511508 + Pik3r4 protein_coding retained_intron MGP_C3HHeJ_T0093649.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490074 106538758 + MGP_C3HHeJ_P0093649 Pik3r4 protein_coding protein_coding MGP_C3HHeJ_T0093650.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490208 106538883 + MGP_C3HHeJ_P0093650 Pik3r4 protein_coding protein_coding MGP_C3HHeJ_T0093651.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106490239 106495840 + MGP_C3HHeJ_P0093651 Pik3r4 protein_coding protein_coding MGP_C3HHeJ_T0093652.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106506076 106516701 + MGP_C3HHeJ_P0093652 Pik3r4 protein_coding protein_coding MGP_C3HHeJ_T0093653.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106508844 106511048 + Pik3r4 protein_coding retained_intron MGP_C3HHeJ_T0093654.1 MGP_C3HHeJ_G0034899.1 mouse_genomes_project 9 106532934 106537621 + Pik3r4 protein_coding retained_intron MGP_C3HHeJ_T0090834.1 MGP_C3HHeJ_G0034052.1 mouse_genomes_project 9 13098812 13144898 - MGP_C3HHeJ_P0090834 Mtnr1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090835.1 MGP_C3HHeJ_G0034052.1 mouse_genomes_project 9 13133073 13144802 - MGP_C3HHeJ_P0090835 Mtnr1b protein_coding protein_coding MGP_C3HHeJ_T0002390.1 MGP_C3HHeJ_G0002308.1 mouse_genomes_project 9 101334777 101338859 + TEC TEC MGP_C3HHeJ_T0098302.1 MGP_C3HHeJ_G0036514.1 mouse_genomes_project 9 63782485 63782620 + Gm24289 scaRNA scaRNA MGP_C3HHeJ_T0094904.1 MGP_C3HHeJ_G0035149.1 mouse_genomes_project 9 124775081 124784154 + MGP_C3HHeJ_P0094904 Zkscan7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010986.1 MGP_C3HHeJ_G0009119.1 mouse_genomes_project 9 64487822 64487957 - Gm25640 miRNA miRNA MGP_C3HHeJ_T0091170.1 MGP_C3HHeJ_G0034196.1 mouse_genomes_project 9 28913042 28956612 + MGP_C3HHeJ_P0091170 Zbtb44 protein_coding protein_coding MGP_C3HHeJ_T0091171.1 MGP_C3HHeJ_G0034196.1 mouse_genomes_project 9 28938705 28956340 + MGP_C3HHeJ_P0091171 Zbtb44 protein_coding protein_coding MGP_C3HHeJ_T0092743.1 MGP_C3HHeJ_G0034702.1 mouse_genomes_project 9 72787795 72803610 + MGP_C3HHeJ_P0092743 Dyx1c1 protein_coding protein_coding MGP_C3HHeJ_T0092744.1 MGP_C3HHeJ_G0034702.1 mouse_genomes_project 9 72787795 72803613 + MGP_C3HHeJ_P0092744 Dyx1c1 protein_coding protein_coding MGP_C3HHeJ_T0092664.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71635355 71906407 - MGP_C3HHeJ_P0092664 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092665.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71636913 71691033 - Tcf12 protein_coding retained_intron MGP_C3HHeJ_T0092666.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71636929 71906381 - MGP_C3HHeJ_P0092666 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092667.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71636934 71691343 - MGP_C3HHeJ_P0092667 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092668.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71636938 71906366 - MGP_C3HHeJ_P0092668 Tcf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092669.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71637384 71906210 - MGP_C3HHeJ_P0092669 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092670.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71638173 71906431 - MGP_C3HHeJ_P0092670 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092671.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71642557 71691036 - MGP_C3HHeJ_P0092671 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092672.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71642560 71906372 - MGP_C3HHeJ_P0092672 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092673.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71651569 71905761 - MGP_C3HHeJ_P0092673 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092674.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71662541 71679929 - Tcf12 protein_coding processed_transcript MGP_C3HHeJ_T0092675.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71671209 71904329 - MGP_C3HHeJ_P0092675 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092676.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71671209 71690932 - MGP_C3HHeJ_P0092676 Tcf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092677.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71677949 71788056 - MGP_C3HHeJ_P0092677 Tcf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092678.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71678339 71788054 - MGP_C3HHeJ_P0092678 Tcf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092679.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71678960 71906331 - MGP_C3HHeJ_P0092679 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092680.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71678981 71906159 - MGP_C3HHeJ_P0092680 Tcf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092681.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71679654 71718235 - MGP_C3HHeJ_P0092681 Tcf12 protein_coding protein_coding MGP_C3HHeJ_T0092682.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71680432 71906351 - MGP_C3HHeJ_P0092682 Tcf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092683.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71737750 71906407 - Tcf12 protein_coding retained_intron MGP_C3HHeJ_T0092684.1 MGP_C3HHeJ_G0034694.1 mouse_genomes_project 9 71900744 71905086 - Tcf12 protein_coding retained_intron MGP_C3HHeJ_T0094454.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111587256 111627971 + MGP_C3HHeJ_P0094454 Scap protein_coding protein_coding MGP_C3HHeJ_T0094455.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111587264 111607336 + Scap protein_coding retained_intron MGP_C3HHeJ_T0094456.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111587324 111639735 + MGP_C3HHeJ_P0094456 Scap protein_coding protein_coding MGP_C3HHeJ_T0094457.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111587518 111607184 + MGP_C3HHeJ_P0094457 Scap protein_coding protein_coding MGP_C3HHeJ_T0094458.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111587604 111627203 + MGP_C3HHeJ_P0094458 Scap protein_coding protein_coding MGP_C3HHeJ_T0094459.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111598218 111607184 + MGP_C3HHeJ_P0094459 Scap protein_coding protein_coding MGP_C3HHeJ_T0094460.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111615156 111617657 + Scap protein_coding retained_intron MGP_C3HHeJ_T0094461.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111615589 111627172 + Scap protein_coding processed_transcript MGP_C3HHeJ_T0094462.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111629199 111631579 + Scap protein_coding retained_intron MGP_C3HHeJ_T0094463.1 MGP_C3HHeJ_G0035029.1 mouse_genomes_project 9 111633049 111633533 + Scap protein_coding retained_intron MGP_C3HHeJ_T0100985.1 MGP_C3HHeJ_G0039179.1 mouse_genomes_project 9 76680462 76680582 - Gm22938 snoRNA snoRNA MGP_C3HHeJ_T0002362.1 MGP_C3HHeJ_G0002280.1 mouse_genomes_project 9 86968802 86971325 + TEC TEC MGP_C3HHeJ_T0090990.1 MGP_C3HHeJ_G0034130.1 mouse_genomes_project 9 18822258 18839032 - MGP_C3HHeJ_P0090990 Ap1m2 protein_coding protein_coding MGP_C3HHeJ_T0090991.1 MGP_C3HHeJ_G0034130.1 mouse_genomes_project 9 18822258 18839032 - MGP_C3HHeJ_P0090991 Ap1m2 protein_coding protein_coding MGP_C3HHeJ_T0091721.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44548768 44610763 - MGP_C3HHeJ_P0091721 Rnf214 protein_coding protein_coding MGP_C3HHeJ_T0091722.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44549034 44610771 - MGP_C3HHeJ_P0091722 Rnf214 protein_coding protein_coding MGP_C3HHeJ_T0091723.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44549034 44610301 - MGP_C3HHeJ_P0091723 Rnf214 protein_coding protein_coding MGP_C3HHeJ_T0091724.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44549633 44610267 - Rnf214 protein_coding retained_intron MGP_C3HHeJ_T0091725.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44549642 44610755 - MGP_C3HHeJ_P0091725 Rnf214 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091726.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44550177 44610788 - MGP_C3HHeJ_P0091726 Rnf214 protein_coding protein_coding MGP_C3HHeJ_T0091727.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44550276 44610263 - MGP_C3HHeJ_P0091727 Rnf214 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091728.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44554160 44561502 - Rnf214 protein_coding retained_intron MGP_C3HHeJ_T0091729.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44563584 44564297 - Rnf214 protein_coding retained_intron MGP_C3HHeJ_T0091730.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44593070 44601013 - Rnf214 protein_coding retained_intron MGP_C3HHeJ_T0091731.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44593365 44610281 - MGP_C3HHeJ_P0091731 Rnf214 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091732.1 MGP_C3HHeJ_G0034425.1 mouse_genomes_project 9 44598570 44603467 - Rnf214 protein_coding retained_intron MGP_C3HHeJ_T0094777.1 MGP_C3HHeJ_G0035110.1 mouse_genomes_project 9 121700971 121713928 - MGP_C3HHeJ_P0094777 Gorasp1 protein_coding protein_coding MGP_C3HHeJ_T0090788.1 MGP_C3HHeJ_G0034038.1 mouse_genomes_project 9 11988066 11990822 - MGP_C3HHeJ_P0090788 Ankrd49 protein_coding protein_coding MGP_C3HHeJ_T0091467.1 MGP_C3HHeJ_G0034339.1 mouse_genomes_project 9 38392694 38394511 - MGP_C3HHeJ_P0091467 protein_coding protein_coding MGP_C3HHeJ_T0092282.1 MGP_C3HHeJ_G0034595.1 mouse_genomes_project 9 60108819 60202459 + MGP_C3HHeJ_P0092282 Uaca protein_coding protein_coding MGP_C3HHeJ_T0009125.1 MGP_C3HHeJ_G0007324.1 mouse_genomes_project 9 18546030 18549523 - Gm26592 lincRNA lincRNA MGP_C3HHeJ_T0094341.1 MGP_C3HHeJ_G0035008.1 mouse_genomes_project 9 110031384 110042963 - MGP_C3HHeJ_P0094341 Tma7 protein_coding protein_coding MGP_C3HHeJ_T0094342.1 MGP_C3HHeJ_G0035008.1 mouse_genomes_project 9 110034707 110043172 - MGP_C3HHeJ_P0094342 Tma7 protein_coding protein_coding MGP_C3HHeJ_T0094343.1 MGP_C3HHeJ_G0035008.1 mouse_genomes_project 9 110036593 110042963 - Tma7 protein_coding processed_transcript MGP_C3HHeJ_T0094344.1 MGP_C3HHeJ_G0035008.1 mouse_genomes_project 9 110042648 110042950 - Tma7 protein_coding retained_intron MGP_C3HHeJ_T0099735.1 MGP_C3HHeJ_G0037929.1 mouse_genomes_project 9 112368835 112368898 + Gm26409 snRNA snRNA MGP_C3HHeJ_T0093351.1 MGP_C3HHeJ_G0034838.1 mouse_genomes_project 9 98964658 98990232 + MGP_C3HHeJ_P0093351 Rbp1 protein_coding protein_coding MGP_C3HHeJ_T0091393.1 MGP_C3HHeJ_G0034277.1 mouse_genomes_project 9 36665517 36666513 + MGP_C3HHeJ_P0091393 Olfr250 protein_coding protein_coding MGP_C3HHeJ_T0002347.1 MGP_C3HHeJ_G0002266.1 mouse_genomes_project 9 73396639 73398659 - TEC TEC MGP_C3HHeJ_T0091520.1 MGP_C3HHeJ_G0034359.1 mouse_genomes_project 9 40855746 40870200 - Tecta protein_coding processed_transcript MGP_C3HHeJ_T0091521.1 MGP_C3HHeJ_G0034359.1 mouse_genomes_project 9 40855749 40928091 - MGP_C3HHeJ_P0091521 Tecta protein_coding protein_coding MGP_C3HHeJ_T0091522.1 MGP_C3HHeJ_G0034359.1 mouse_genomes_project 9 40855822 40927889 - MGP_C3HHeJ_P0091522 Tecta protein_coding protein_coding MGP_C3HHeJ_T0092321.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61808975 61922275 - MGP_C3HHeJ_P0092321 Coro2b protein_coding protein_coding MGP_C3HHeJ_T0092322.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61815518 61817932 - MGP_C3HHeJ_P0092322 Coro2b protein_coding protein_coding MGP_C3HHeJ_T0092323.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61817866 61894332 - MGP_C3HHeJ_P0092323 Coro2b protein_coding protein_coding MGP_C3HHeJ_T0092324.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61818193 61819185 - Coro2b protein_coding retained_intron MGP_C3HHeJ_T0092325.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61819268 61830020 - MGP_C3HHeJ_P0092325 Coro2b protein_coding protein_coding MGP_C3HHeJ_T0092326.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61822423 61905735 - MGP_C3HHeJ_P0092326 Coro2b protein_coding protein_coding MGP_C3HHeJ_T0092327.1 MGP_C3HHeJ_G0034604.1 mouse_genomes_project 9 61833790 61922191 - Coro2b protein_coding retained_intron MGP_C3HHeJ_T0091435.1 MGP_C3HHeJ_G0034313.1 mouse_genomes_project 9 37600853 37601816 - MGP_C3HHeJ_P0091435 Olfr945 protein_coding protein_coding MGP_C3HHeJ_T0091482.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38724946 38777986 - MGP_C3HHeJ_P0091482 Gramd1b protein_coding protein_coding MGP_C3HHeJ_T0091483.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38724952 38986586 - MGP_C3HHeJ_P0091483 Gramd1b protein_coding protein_coding MGP_C3HHeJ_T0091484.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38724955 38777608 - MGP_C3HHeJ_P0091484 Gramd1b protein_coding protein_coding MGP_C3HHeJ_T0091485.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38724958 38907292 - MGP_C3HHeJ_P0091485 Gramd1b protein_coding protein_coding MGP_C3HHeJ_T0091486.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38729588 38839790 - MGP_C3HHeJ_P0091486 Gramd1b protein_coding protein_coding MGP_C3HHeJ_T0091487.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38729619 38907386 - MGP_C3HHeJ_P0091487 Gramd1b protein_coding protein_coding MGP_C3HHeJ_T0091488.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38731738 38738704 - Gramd1b protein_coding retained_intron MGP_C3HHeJ_T0091489.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38748450 38765217 - Gramd1b protein_coding retained_intron MGP_C3HHeJ_T0091490.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38749214 38840088 - Gramd1b protein_coding processed_transcript MGP_C3HHeJ_T0091491.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38749216 38840074 - Gramd1b protein_coding processed_transcript MGP_C3HHeJ_T0091492.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38765174 38919210 - Gramd1b protein_coding processed_transcript MGP_C3HHeJ_T0091493.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38765187 38919200 - Gramd1b protein_coding processed_transcript MGP_C3HHeJ_T0091494.1 MGP_C3HHeJ_G0034349.1 mouse_genomes_project 9 38765234 38822175 - Gramd1b protein_coding processed_transcript MGP_C3HHeJ_T0091708.1 MGP_C3HHeJ_G0034421.1 mouse_genomes_project 9 44069151 44076292 + MGP_C3HHeJ_P0091708 Fxyd2 protein_coding protein_coding MGP_C3HHeJ_T0091709.1 MGP_C3HHeJ_G0034421.1 mouse_genomes_project 9 44072159 44076255 + MGP_C3HHeJ_P0091709 Fxyd2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009170.1 MGP_C3HHeJ_G0007363.1 mouse_genomes_project 9 62220596 62225213 + Gm26609 lincRNA lincRNA MGP_C3HHeJ_T0093767.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107568107 107595702 - MGP_C3HHeJ_P0093767 Tex264 protein_coding protein_coding MGP_C3HHeJ_T0093768.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107568107 107595561 - MGP_C3HHeJ_P0093768 Tex264 protein_coding protein_coding MGP_C3HHeJ_T0093769.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107568113 107595794 - MGP_C3HHeJ_P0093769 Tex264 protein_coding protein_coding MGP_C3HHeJ_T0093770.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107568353 107573347 - Tex264 protein_coding processed_transcript MGP_C3HHeJ_T0093771.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107568409 107595798 - Tex264 protein_coding processed_transcript MGP_C3HHeJ_T0093772.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107568598 107595806 - Tex264 protein_coding processed_transcript MGP_C3HHeJ_T0093773.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107571759 107595788 - Tex264 protein_coding processed_transcript MGP_C3HHeJ_T0093774.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107587386 107595184 - Tex264 protein_coding processed_transcript MGP_C3HHeJ_T0093775.1 MGP_C3HHeJ_G0034925.1 mouse_genomes_project 9 107594814 107595782 - Tex264 protein_coding processed_transcript MGP_C3HHeJ_T0094336.1 MGP_C3HHeJ_G0035007.1 mouse_genomes_project 9 110016038 110030944 - MGP_C3HHeJ_P0094336 Atrip protein_coding protein_coding MGP_C3HHeJ_T0094337.1 MGP_C3HHeJ_G0035007.1 mouse_genomes_project 9 110016076 110030872 - MGP_C3HHeJ_P0094337 Atrip protein_coding protein_coding MGP_C3HHeJ_T0094338.1 MGP_C3HHeJ_G0035007.1 mouse_genomes_project 9 110016952 110022198 - MGP_C3HHeJ_P0094338 Atrip protein_coding protein_coding MGP_C3HHeJ_T0094339.1 MGP_C3HHeJ_G0035007.1 mouse_genomes_project 9 110024280 110026334 - Atrip protein_coding retained_intron MGP_C3HHeJ_T0094340.1 MGP_C3HHeJ_G0035007.1 mouse_genomes_project 9 110028558 110030886 - Atrip protein_coding retained_intron MGP_C3HHeJ_T0090783.1 MGP_C3HHeJ_G0034037.1 mouse_genomes_project 9 11964797 11969539 - MGP_C3HHeJ_P0090783 1700012B09Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090784.1 MGP_C3HHeJ_G0034037.1 mouse_genomes_project 9 11964803 11978871 - MGP_C3HHeJ_P0090784 1700012B09Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090785.1 MGP_C3HHeJ_G0034037.1 mouse_genomes_project 9 11964805 11969495 - MGP_C3HHeJ_P0090785 1700012B09Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090786.1 MGP_C3HHeJ_G0034037.1 mouse_genomes_project 9 11966433 11978888 - MGP_C3HHeJ_P0090786 1700012B09Rik protein_coding protein_coding MGP_C3HHeJ_T0090787.1 MGP_C3HHeJ_G0034037.1 mouse_genomes_project 9 11966433 11978871 - MGP_C3HHeJ_P0090787 1700012B09Rik protein_coding protein_coding MGP_C3HHeJ_T0005356.1 MGP_C3HHeJ_G0004530.1 mouse_genomes_project 9 34941168 34958497 + Gm26787 antisense antisense MGP_C3HHeJ_T0002369.1 MGP_C3HHeJ_G0002287.1 mouse_genomes_project 9 89533385 89537264 - TEC TEC MGP_C3HHeJ_T0091835.1 MGP_C3HHeJ_G0034464.1 mouse_genomes_project 9 49479088 49486600 - MGP_C3HHeJ_P0091835 Sdhd protein_coding protein_coding MGP_C3HHeJ_T0002373.1 MGP_C3HHeJ_G0002291.1 mouse_genomes_project 9 91672940 91675362 - TEC TEC MGP_C3HHeJ_T0091147.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 25590489 25591233 + Opcml protein_coding processed_transcript MGP_C3HHeJ_T0091148.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 25590661 26746683 + MGP_C3HHeJ_P0091148 Opcml protein_coding protein_coding MGP_C3HHeJ_T0091149.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 25591016 25827047 + Opcml protein_coding processed_transcript MGP_C3HHeJ_T0091150.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 26209542 26212345 + Opcml protein_coding processed_transcript MGP_C3HHeJ_T0091151.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 26210190 26742350 + MGP_C3HHeJ_P0091151 Opcml protein_coding protein_coding MGP_C3HHeJ_T0091152.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 26210476 26632807 + Opcml protein_coding retained_intron MGP_C3HHeJ_T0091153.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 26210562 26464472 + Opcml protein_coding processed_transcript MGP_C3HHeJ_T0091154.1 MGP_C3HHeJ_G0034191.1 mouse_genomes_project 9 26477523 26491099 + Opcml protein_coding processed_transcript MGP_C3HHeJ_T0091837.1 MGP_C3HHeJ_G0034466.1 mouse_genomes_project 9 49487990 49500008 - MGP_C3HHeJ_P0091837 AU019823 protein_coding protein_coding MGP_C3HHeJ_T0091838.1 MGP_C3HHeJ_G0034466.1 mouse_genomes_project 9 49487994 49500008 - MGP_C3HHeJ_P0091838 AU019823 protein_coding protein_coding MGP_C3HHeJ_T0091839.1 MGP_C3HHeJ_G0034466.1 mouse_genomes_project 9 49490342 49499811 - MGP_C3HHeJ_P0091839 AU019823 protein_coding protein_coding MGP_C3HHeJ_T0091840.1 MGP_C3HHeJ_G0034466.1 mouse_genomes_project 9 49490451 49499825 - MGP_C3HHeJ_P0091840 AU019823 protein_coding protein_coding MGP_C3HHeJ_T0091841.1 MGP_C3HHeJ_G0034466.1 mouse_genomes_project 9 49490484 49499808 - MGP_C3HHeJ_P0091841 AU019823 protein_coding protein_coding MGP_C3HHeJ_T0091966.1 MGP_C3HHeJ_G0034503.1 mouse_genomes_project 9 52996103 53040518 - MGP_C3HHeJ_P0091966 Tnfaip8l3 protein_coding protein_coding MGP_C3HHeJ_T0011000.1 MGP_C3HHeJ_G0009133.1 mouse_genomes_project 9 103017808 103017860 - Mir7243 miRNA miRNA MGP_C3HHeJ_T0090768.1 MGP_C3HHeJ_G0034030.1 mouse_genomes_project 9 11465482 11516250 + MGP_C3HHeJ_P0090768 Sesn3 protein_coding protein_coding MGP_C3HHeJ_T0091710.1 MGP_C3HHeJ_G0034422.1 mouse_genomes_project 9 44097253 44433259 + MGP_C3HHeJ_P0091710 Dscaml1 protein_coding protein_coding MGP_C3HHeJ_T0091934.1 MGP_C3HHeJ_G0034491.1 mouse_genomes_project 9 52246955 52327774 + MGP_C3HHeJ_P0091934 Exph5 protein_coding protein_coding MGP_C3HHeJ_T0091935.1 MGP_C3HHeJ_G0034491.1 mouse_genomes_project 9 52288286 52319215 + Exph5 protein_coding retained_intron MGP_C3HHeJ_T0091936.1 MGP_C3HHeJ_G0034491.1 mouse_genomes_project 9 52288391 52302841 + Exph5 protein_coding retained_intron MGP_C3HHeJ_T0015830.1 MGP_C3HHeJ_G0013934.1 mouse_genomes_project 9 34660325 34660524 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011637.1 MGP_C3HHeJ_G0009770.1 mouse_genomes_project 9 65235 65319 - Gm27679 misc_RNA misc_RNA MGP_C3HHeJ_T0009159.1 MGP_C3HHeJ_G0007354.1 mouse_genomes_project 9 56160755 56161553 - 2700012I20Rik lincRNA lincRNA MGP_C3HHeJ_T0005387.1 MGP_C3HHeJ_G0004549.1 mouse_genomes_project 9 57288824 57289999 + Gm16131 antisense antisense MGP_C3HHeJ_T0092196.1 MGP_C3HHeJ_G0034573.1 mouse_genomes_project 9 57557201 57568589 - MGP_C3HHeJ_P0092196 Tbc1d21 protein_coding protein_coding MGP_C3HHeJ_T0009136.1 MGP_C3HHeJ_G0007335.1 mouse_genomes_project 9 31974586 31988133 + lincRNA lincRNA MGP_C3HHeJ_T0010943.1 MGP_C3HHeJ_G0009076.1 mouse_genomes_project 9 1268908 1268975 - Gm23992 miRNA miRNA MGP_C3HHeJ_T0098557.1 MGP_C3HHeJ_G0036756.1 mouse_genomes_project 9 27427764 27429791 - Gm15521 sense_intronic sense_intronic MGP_C3HHeJ_T0091758.1 MGP_C3HHeJ_G0034432.1 mouse_genomes_project 9 44940960 44943255 - MGP_C3HHeJ_P0091758 Apoc3 protein_coding protein_coding MGP_C3HHeJ_T0091759.1 MGP_C3HHeJ_G0034432.1 mouse_genomes_project 9 44941078 44943294 - MGP_C3HHeJ_P0091759 Apoc3 protein_coding protein_coding MGP_C3HHeJ_T0091760.1 MGP_C3HHeJ_G0034432.1 mouse_genomes_project 9 44941225 44943631 - MGP_C3HHeJ_P0091760 Apoc3 protein_coding protein_coding MGP_C3HHeJ_T0091761.1 MGP_C3HHeJ_G0034432.1 mouse_genomes_project 9 44942430 44943464 - MGP_C3HHeJ_P0091761 Apoc3 protein_coding protein_coding MGP_C3HHeJ_T0002387.1 MGP_C3HHeJ_G0002305.1 mouse_genomes_project 9 99876765 99879634 + TEC TEC MGP_C3HHeJ_T0094746.1 MGP_C3HHeJ_G0035097.1 mouse_genomes_project 9 120886921 120889394 + MGP_C3HHeJ_P0094746 Gm10608 protein_coding protein_coding MGP_C3HHeJ_T0091372.1 MGP_C3HHeJ_G0034257.1 mouse_genomes_project 9 36030998 36064682 + MGP_C3HHeJ_P0091372 protein_coding protein_coding MGP_C3HHeJ_T0094979.1 MGP_C3HHeJ_G0035176.1 mouse_genomes_project 9 126357692 126357946 - MGP_C3HHeJ_P0094979 protein_coding protein_coding MGP_C3HHeJ_T0094980.1 MGP_C3HHeJ_G0035176.1 mouse_genomes_project 9 126357882 126363566 - MGP_C3HHeJ_P0094980 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100979.1 MGP_C3HHeJ_G0039173.1 mouse_genomes_project 9 67942081 67942211 + Gm22382 snoRNA snoRNA MGP_C3HHeJ_T0009264.1 MGP_C3HHeJ_G0007435.1 mouse_genomes_project 9 120639785 120640685 + Gm16295 lincRNA lincRNA MGP_C3HHeJ_T0010982.1 MGP_C3HHeJ_G0009115.1 mouse_genomes_project 9 61499402 61499479 - Mir5133 miRNA miRNA MGP_C3HHeJ_T0091502.1 MGP_C3HHeJ_G0034354.1 mouse_genomes_project 9 39379950 39445427 - MGP_C3HHeJ_P0091502 Jhy protein_coding protein_coding MGP_C3HHeJ_T0091503.1 MGP_C3HHeJ_G0034354.1 mouse_genomes_project 9 39379952 39382722 - Jhy protein_coding retained_intron MGP_C3HHeJ_T0091504.1 MGP_C3HHeJ_G0034354.1 mouse_genomes_project 9 39442225 39443665 - MGP_C3HHeJ_P0091504 Jhy protein_coding protein_coding MGP_C3HHeJ_T0015920.1 MGP_C3HHeJ_G0014024.1 mouse_genomes_project 9 97082076 97082281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005391.1 MGP_C3HHeJ_G0004552.1 mouse_genomes_project 9 66188850 66199921 + Gm15563 antisense antisense MGP_C3HHeJ_T0015850.1 MGP_C3HHeJ_G0013954.1 mouse_genomes_project 9 71619931 71620193 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090885.1 MGP_C3HHeJ_G0034090.1 mouse_genomes_project 9 17528637 17529633 - MGP_C3HHeJ_P0090885 Olfr867 protein_coding protein_coding MGP_C3HHeJ_T0100977.1 MGP_C3HHeJ_G0039171.1 mouse_genomes_project 9 64396300 64396442 - Gm24347 snoRNA snoRNA MGP_C3HHeJ_T0015930.1 MGP_C3HHeJ_G0014034.1 mouse_genomes_project 9 101744809 101745173 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090869.1 MGP_C3HHeJ_G0034074.1 mouse_genomes_project 9 16697626 16698568 + MGP_C3HHeJ_P0090869 Olfr845 protein_coding protein_coding MGP_C3HHeJ_T0015935.1 MGP_C3HHeJ_G0014039.1 mouse_genomes_project 9 103260055 103261556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092003.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947370 53954611 + MGP_C3HHeJ_P0092003 Psma4 protein_coding protein_coding MGP_C3HHeJ_T0092004.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947378 53952967 + Psma4 protein_coding retained_intron MGP_C3HHeJ_T0092005.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947385 53951613 + Psma4 protein_coding retained_intron MGP_C3HHeJ_T0092006.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947395 53949387 + Psma4 protein_coding processed_transcript MGP_C3HHeJ_T0092007.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947395 53953514 + MGP_C3HHeJ_P0092007 Psma4 protein_coding protein_coding MGP_C3HHeJ_T0092008.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947470 53950007 + Psma4 protein_coding retained_intron MGP_C3HHeJ_T0092009.1 MGP_C3HHeJ_G0034517.1 mouse_genomes_project 9 53947684 53952880 + MGP_C3HHeJ_P0092009 Psma4 protein_coding protein_coding MGP_C3HHeJ_T0015817.1 MGP_C3HHeJ_G0013921.1 mouse_genomes_project 9 11943850 11944378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015871.1 MGP_C3HHeJ_G0013975.1 mouse_genomes_project 9 76834762 76835060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090901.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17961140 17970838 - MGP_C3HHeJ_P0090901 Zfp426 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090902.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17961299 17985306 - MGP_C3HHeJ_P0090902 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0090903.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17961511 17970725 - MGP_C3HHeJ_P0090903 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0090904.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17962417 17985306 - MGP_C3HHeJ_P0090904 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0090905.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17963576 17966054 - Zfp426 protein_coding retained_intron MGP_C3HHeJ_T0090906.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17963722 17985295 - MGP_C3HHeJ_P0090906 Zfp426 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0090907.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17963767 17983369 - MGP_C3HHeJ_P0090907 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0090908.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17965696 17970822 - MGP_C3HHeJ_P0090908 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0090909.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17967527 17985265 - MGP_C3HHeJ_P0090909 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0090910.1 MGP_C3HHeJ_G0034100.1 mouse_genomes_project 9 17968997 17985275 - MGP_C3HHeJ_P0090910 Zfp426 protein_coding protein_coding MGP_C3HHeJ_T0002428.1 MGP_C3HHeJ_G0002346.1 mouse_genomes_project 9 111226205 111227145 + TEC TEC MGP_C3HHeJ_T0093514.1 MGP_C3HHeJ_G0034878.1 mouse_genomes_project 9 103918276 103960044 - MGP_C3HHeJ_P0093514 Gm20425 protein_coding protein_coding MGP_C3HHeJ_T0009143.1 MGP_C3HHeJ_G0007341.1 mouse_genomes_project 9 34841375 34859665 - 1700027I24Rik lincRNA lincRNA MGP_C3HHeJ_T0091832.1 MGP_C3HHeJ_G0034462.1 mouse_genomes_project 9 49435251 49439389 - MGP_C3HHeJ_P0091832 Tex12 protein_coding protein_coding MGP_C3HHeJ_T0015927.1 MGP_C3HHeJ_G0014031.1 mouse_genomes_project 9 100564955 100565781 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099729.1 MGP_C3HHeJ_G0037923.1 mouse_genomes_project 9 106521165 106521252 - Gm22720 snRNA snRNA MGP_C3HHeJ_T0094360.1 MGP_C3HHeJ_G0035015.1 mouse_genomes_project 9 110416552 110611320 - MGP_C3HHeJ_P0094360 protein_coding protein_coding MGP_C3HHeJ_T0015876.1 MGP_C3HHeJ_G0013980.1 mouse_genomes_project 9 77571427 77572628 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091689.1 MGP_C3HHeJ_G0034412.1 mouse_genomes_project 9 43732336 43762634 + MGP_C3HHeJ_P0091689 Amica1 protein_coding protein_coding MGP_C3HHeJ_T0005392.1 MGP_C3HHeJ_G0004553.1 mouse_genomes_project 9 66427269 66431451 - BC050972 antisense antisense MGP_C3HHeJ_T0005393.1 MGP_C3HHeJ_G0004553.1 mouse_genomes_project 9 66427502 66431151 - BC050972 antisense antisense MGP_C3HHeJ_T0005394.1 MGP_C3HHeJ_G0004553.1 mouse_genomes_project 9 66427531 66432951 - BC050972 antisense antisense MGP_C3HHeJ_T0092300.1 MGP_C3HHeJ_G0034598.1 mouse_genomes_project 9 61273570 61274825 - MGP_C3HHeJ_P0092300 Rplp1 protein_coding protein_coding MGP_C3HHeJ_T0099725.1 MGP_C3HHeJ_G0037919.1 mouse_genomes_project 9 95079672 95079768 + Gm24178 snRNA snRNA MGP_C3HHeJ_T0094701.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119726490 119750894 + MGP_C3HHeJ_P0094701 Azi2 protein_coding protein_coding MGP_C3HHeJ_T0094702.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119726548 119749794 + MGP_C3HHeJ_P0094702 Azi2 protein_coding protein_coding MGP_C3HHeJ_T0094703.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119726570 119747547 + MGP_C3HHeJ_P0094703 Azi2 protein_coding protein_coding MGP_C3HHeJ_T0094704.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119726607 119756851 + MGP_C3HHeJ_P0094704 Azi2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094705.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119726678 119737071 + Azi2 protein_coding retained_intron MGP_C3HHeJ_T0094706.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119736165 119749544 + MGP_C3HHeJ_P0094706 Azi2 protein_coding protein_coding MGP_C3HHeJ_T0094707.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119736226 119738510 + Azi2 protein_coding retained_intron MGP_C3HHeJ_T0094708.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119737737 119748939 + MGP_C3HHeJ_P0094708 Azi2 protein_coding protein_coding MGP_C3HHeJ_T0094709.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119742333 119748841 + Azi2 protein_coding retained_intron MGP_C3HHeJ_T0094710.1 MGP_C3HHeJ_G0035087.1 mouse_genomes_project 9 119745763 119749315 + MGP_C3HHeJ_P0094710 Azi2 protein_coding protein_coding MGP_C3HHeJ_T0099732.1 MGP_C3HHeJ_G0037926.1 mouse_genomes_project 9 108012485 108012592 + Gm22454 snRNA snRNA MGP_C3HHeJ_T0101278.1 MGP_C3HHeJ_G0039383.1 mouse_genomes_project 9 57378301 57384247 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101279.1 MGP_C3HHeJ_G0039383.1 mouse_genomes_project 9 57383475 57383992 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0093367.1 MGP_C3HHeJ_G0034845.1 mouse_genomes_project 9 99451566 99453070 + MGP_C3HHeJ_P0093367 7420426K07Rik protein_coding protein_coding MGP_C3HHeJ_T0090881.1 MGP_C3HHeJ_G0034086.1 mouse_genomes_project 9 17325187 17329308 - MGP_C3HHeJ_P0090881 Olfr860 protein_coding protein_coding MGP_C3HHeJ_T0093215.1 MGP_C3HHeJ_G0034812.1 mouse_genomes_project 9 92700263 92718963 + 1700057G04Rik protein_coding processed_transcript MGP_C3HHeJ_T0093216.1 MGP_C3HHeJ_G0034812.1 mouse_genomes_project 9 92700263 92740408 + MGP_C3HHeJ_P0093216 1700057G04Rik protein_coding protein_coding MGP_C3HHeJ_T0093217.1 MGP_C3HHeJ_G0034812.1 mouse_genomes_project 9 92700263 92754793 + MGP_C3HHeJ_P0093217 1700057G04Rik protein_coding protein_coding MGP_C3HHeJ_T0093218.1 MGP_C3HHeJ_G0034812.1 mouse_genomes_project 9 92700294 92748018 + 1700057G04Rik protein_coding processed_transcript MGP_C3HHeJ_T0093219.1 MGP_C3HHeJ_G0034812.1 mouse_genomes_project 9 92740229 92754736 + MGP_C3HHeJ_P0093219 1700057G04Rik protein_coding protein_coding MGP_C3HHeJ_T0093220.1 MGP_C3HHeJ_G0034812.1 mouse_genomes_project 9 92748031 92754793 + MGP_C3HHeJ_P0093220 1700057G04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0015859.1 MGP_C3HHeJ_G0013963.1 mouse_genomes_project 9 72424579 72425396 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0094804.1 MGP_C3HHeJ_G0035121.1 mouse_genomes_project 9 122353756 122382082 + MGP_C3HHeJ_P0094804 Entpd3 protein_coding protein_coding MGP_C3HHeJ_T0094805.1 MGP_C3HHeJ_G0035121.1 mouse_genomes_project 9 122371810 122374731 + Entpd3 protein_coding retained_intron MGP_C3HHeJ_T0005386.1 MGP_C3HHeJ_G0004548.1 mouse_genomes_project 9 57201640 57218461 + Gm16130 antisense antisense MGP_C3HHeJ_T0094086.1 MGP_C3HHeJ_G0034970.1 mouse_genomes_project 9 109044793 109141939 - MGP_C3HHeJ_P0094086 Bsn protein_coding protein_coding MGP_C3HHeJ_T0094087.1 MGP_C3HHeJ_G0034970.1 mouse_genomes_project 9 109044794 109059195 - MGP_C3HHeJ_P0094087 Bsn protein_coding protein_coding MGP_C3HHeJ_T0091377.1 MGP_C3HHeJ_G0034262.1 mouse_genomes_project 9 36262675 36263623 + MGP_C3HHeJ_P0091377 Olfr881 protein_coding protein_coding MGP_C3HHeJ_T0005358.1 MGP_C3HHeJ_G0004532.1 mouse_genomes_project 9 39182297 39183392 - Gm16095 antisense antisense MGP_C3HHeJ_T0091945.1 MGP_C3HHeJ_G0034495.1 mouse_genomes_project 9 52493615 52531266 + MGP_C3HHeJ_P0091945 Npat protein_coding protein_coding MGP_C3HHeJ_T0091946.1 MGP_C3HHeJ_G0034495.1 mouse_genomes_project 9 52493720 52531101 + MGP_C3HHeJ_P0091946 Npat protein_coding unknown_likely_coding MGP_C3HHeJ_T0091947.1 MGP_C3HHeJ_G0034495.1 mouse_genomes_project 9 52520435 52524112 + Npat protein_coding retained_intron MGP_C3HHeJ_T0091473.1 MGP_C3HHeJ_G0034345.1 mouse_genomes_project 9 38573162 38575916 + MGP_C3HHeJ_P0091473 Tmem225 protein_coding protein_coding MGP_C3HHeJ_T0015892.1 MGP_C3HHeJ_G0013996.1 mouse_genomes_project 9 87658407 87658885 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091205.1 MGP_C3HHeJ_G0034207.1 mouse_genomes_project 9 30602503 30700768 + Ets1 protein_coding retained_intron MGP_C3HHeJ_T0091206.1 MGP_C3HHeJ_G0034207.1 mouse_genomes_project 9 30602521 30618397 + Ets1 protein_coding retained_intron MGP_C3HHeJ_T0091207.1 MGP_C3HHeJ_G0034207.1 mouse_genomes_project 9 30665735 30726931 + MGP_C3HHeJ_P0091207 Ets1 protein_coding protein_coding MGP_C3HHeJ_T0091208.1 MGP_C3HHeJ_G0034207.1 mouse_genomes_project 9 30666070 30729745 + MGP_C3HHeJ_P0091208 Ets1 protein_coding protein_coding MGP_C3HHeJ_T0091209.1 MGP_C3HHeJ_G0034207.1 mouse_genomes_project 9 30666070 30726357 + MGP_C3HHeJ_P0091209 Ets1 protein_coding protein_coding MGP_C3HHeJ_T0092388.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63793796 63833078 - MGP_C3HHeJ_P0092388 Dis3l protein_coding protein_coding MGP_C3HHeJ_T0092389.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63793797 63833109 - MGP_C3HHeJ_P0092389 Dis3l protein_coding protein_coding MGP_C3HHeJ_T0092390.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63794185 63832988 - MGP_C3HHeJ_P0092390 Dis3l protein_coding protein_coding MGP_C3HHeJ_T0092391.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63794185 63832292 - MGP_C3HHeJ_P0092391 Dis3l protein_coding protein_coding MGP_C3HHeJ_T0092392.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63812991 63832991 - Dis3l protein_coding retained_intron MGP_C3HHeJ_T0092393.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63820351 63827438 - MGP_C3HHeJ_P0092393 Dis3l protein_coding protein_coding MGP_C3HHeJ_T0092394.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63827473 63832598 - Dis3l protein_coding processed_transcript MGP_C3HHeJ_T0092395.1 MGP_C3HHeJ_G0034624.1 mouse_genomes_project 9 63831272 63833078 - Dis3l protein_coding retained_intron MGP_C3HHeJ_T0094737.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120824902 120848805 + Dlec1 protein_coding retained_intron MGP_C3HHeJ_T0094738.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120824902 120871820 + MGP_C3HHeJ_P0094738 Dlec1 protein_coding protein_coding MGP_C3HHeJ_T0094739.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120824902 120871268 + MGP_C3HHeJ_P0094739 Dlec1 protein_coding protein_coding MGP_C3HHeJ_T0094740.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120824933 120858220 + MGP_C3HHeJ_P0094740 Dlec1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094741.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120842078 120867808 + Dlec1 protein_coding retained_intron MGP_C3HHeJ_T0094742.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120850521 120851740 + Dlec1 protein_coding retained_intron MGP_C3HHeJ_T0094743.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120851876 120858218 + Dlec1 protein_coding retained_intron MGP_C3HHeJ_T0094744.1 MGP_C3HHeJ_G0035095.1 mouse_genomes_project 9 120852027 120853747 + Dlec1 protein_coding retained_intron MGP_C3HHeJ_T0098558.1 MGP_C3HHeJ_G0036757.1 mouse_genomes_project 9 40087765 40088075 + Gm28119 sense_intronic sense_intronic MGP_C3HHeJ_T0094943.1 MGP_C3HHeJ_G0035165.1 mouse_genomes_project 9 125600360 125699891 + MGP_C3HHeJ_P0094943 Ccr9 protein_coding protein_coding MGP_C3HHeJ_T0094952.1 MGP_C3HHeJ_G0035165.1 mouse_genomes_project 9 125684764 125699889 + MGP_C3HHeJ_P0094952 Ccr9 protein_coding protein_coding MGP_C3HHeJ_T0094953.1 MGP_C3HHeJ_G0035165.1 mouse_genomes_project 9 125684780 125699452 + MGP_C3HHeJ_P0094953 Ccr9 protein_coding protein_coding MGP_C3HHeJ_T0094954.1 MGP_C3HHeJ_G0035165.1 mouse_genomes_project 9 125684782 125699897 + MGP_C3HHeJ_P0094954 Ccr9 protein_coding protein_coding MGP_C3HHeJ_T0094955.1 MGP_C3HHeJ_G0035165.1 mouse_genomes_project 9 125692461 125701383 + MGP_C3HHeJ_P0094955 Ccr9 protein_coding protein_coding MGP_C3HHeJ_T0093459.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101794979 101940183 - MGP_C3HHeJ_P0093459 Ppp2r3a protein_coding protein_coding MGP_C3HHeJ_T0093460.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101795181 101886722 - MGP_C3HHeJ_P0093460 Ppp2r3a protein_coding protein_coding MGP_C3HHeJ_T0093461.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101797778 101815779 - Ppp2r3a protein_coding processed_transcript MGP_C3HHeJ_T0093462.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101814898 101886500 - Ppp2r3a protein_coding retained_intron MGP_C3HHeJ_T0093463.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101879908 101886654 - Ppp2r3a protein_coding retained_intron MGP_C3HHeJ_T0093464.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101885115 101888193 - Ppp2r3a protein_coding retained_intron MGP_C3HHeJ_T0093465.1 MGP_C3HHeJ_G0034866.1 mouse_genomes_project 9 101893834 101899480 - Ppp2r3a protein_coding processed_transcript MGP_C3HHeJ_T0094794.1 MGP_C3HHeJ_G0035117.1 mouse_genomes_project 9 121925816 121930420 + MGP_C3HHeJ_P0094794 Rpsa protein_coding protein_coding MGP_C3HHeJ_T0093365.1 MGP_C3HHeJ_G0034843.1 mouse_genomes_project 9 99376208 99377121 + MGP_C3HHeJ_P0093365 Prr23a1 protein_coding protein_coding MGP_C3HHeJ_T0090887.1 MGP_C3HHeJ_G0034092.1 mouse_genomes_project 9 17653532 17654509 - MGP_C3HHeJ_P0090887 protein_coding protein_coding MGP_C3HHeJ_T0092157.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57234088 57314069 + Stra6 protein_coding retained_intron MGP_C3HHeJ_T0092160.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57249606 57313260 + MGP_C3HHeJ_P0092160 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092161.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57249681 57311473 + MGP_C3HHeJ_P0092161 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092164.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57301101 57326018 + MGP_C3HHeJ_P0092164 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092165.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57301362 57326016 + MGP_C3HHeJ_P0092165 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092166.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57301514 57312909 + MGP_C3HHeJ_P0092166 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092167.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57303919 57312482 + MGP_C3HHeJ_P0092167 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092168.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306039 57313234 + MGP_C3HHeJ_P0092168 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092169.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306097 57326059 + MGP_C3HHeJ_P0092169 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092170.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306097 57313150 + MGP_C3HHeJ_P0092170 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092171.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306557 57313156 + MGP_C3HHeJ_P0092171 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092172.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306687 57313166 + MGP_C3HHeJ_P0092172 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092173.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306687 57326059 + MGP_C3HHeJ_P0092173 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0092174.1 MGP_C3HHeJ_G0034567.1 mouse_genomes_project 9 57306832 57311404 + MGP_C3HHeJ_P0092174 Stra6 protein_coding protein_coding MGP_C3HHeJ_T0002379.1 MGP_C3HHeJ_G0002297.1 mouse_genomes_project 9 95862574 95863666 + TEC TEC MGP_C3HHeJ_T0018361.1 MGP_C3HHeJ_G0015521.1 mouse_genomes_project 9 112275496 112294701 + Gm10030 processed_transcript antisense MGP_C3HHeJ_T0018362.1 MGP_C3HHeJ_G0015521.1 mouse_genomes_project 9 112287045 112293197 + Gm10030 processed_transcript retained_intron MGP_C3HHeJ_T0018363.1 MGP_C3HHeJ_G0015521.1 mouse_genomes_project 9 112291482 112293502 + Gm10030 processed_transcript processed_transcript MGP_C3HHeJ_T0091734.1 MGP_C3HHeJ_G0034427.1 mouse_genomes_project 9 44634626 44641896 - MGP_C3HHeJ_P0091734 Tagln protein_coding protein_coding MGP_C3HHeJ_T0091280.1 MGP_C3HHeJ_G0034226.1 mouse_genomes_project 9 33798300 33799886 - MGP_C3HHeJ_P0091280 Gm17727 protein_coding protein_coding MGP_C3HHeJ_T0009225.1 MGP_C3HHeJ_G0007405.1 mouse_genomes_project 9 97579115 97584245 + Gm26767 lincRNA lincRNA MGP_C3HHeJ_T0093894.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108526590 108534433 - MGP_C3HHeJ_P0093894 Sema3b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093895.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108527133 108538142 - MGP_C3HHeJ_P0093895 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093896.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108527269 108538112 - MGP_C3HHeJ_P0093896 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093897.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108527270 108535570 - MGP_C3HHeJ_P0093897 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093898.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108527271 108538106 - MGP_C3HHeJ_P0093898 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093899.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108527271 108534314 - MGP_C3HHeJ_P0093899 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093900.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108528724 108530228 - Sema3b protein_coding retained_intron MGP_C3HHeJ_T0093901.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108530536 108531088 - Sema3b protein_coding retained_intron MGP_C3HHeJ_T0093902.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108532073 108534181 - MGP_C3HHeJ_P0093902 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093903.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108532228 108535830 - MGP_C3HHeJ_P0093903 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093904.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108532260 108535597 - MGP_C3HHeJ_P0093904 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093905.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108533080 108535595 - MGP_C3HHeJ_P0093905 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093906.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108533958 108538133 - MGP_C3HHeJ_P0093906 Sema3b protein_coding protein_coding MGP_C3HHeJ_T0093907.1 MGP_C3HHeJ_G0034947.1 mouse_genomes_project 9 108534002 108536099 - Sema3b protein_coding processed_transcript MGP_C3HHeJ_T0092745.1 MGP_C3HHeJ_G0034703.1 mouse_genomes_project 9 72787862 72847747 + MGP_C3HHeJ_P0092745 Gm44503 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094528.1 MGP_C3HHeJ_G0035042.1 mouse_genomes_project 9 112106644 112111794 + MGP_C3HHeJ_P0094528 Prss43 protein_coding protein_coding MGP_C3HHeJ_T0092446.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151051 65160285 + MGP_C3HHeJ_P0092446 Pif1 protein_coding protein_coding MGP_C3HHeJ_T0092447.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151073 65151729 + MGP_C3HHeJ_P0092447 Pif1 protein_coding protein_coding MGP_C3HHeJ_T0092448.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151084 65160283 + MGP_C3HHeJ_P0092448 Pif1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092449.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151096 65154384 + Pif1 protein_coding retained_intron MGP_C3HHeJ_T0092450.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151096 65160288 + MGP_C3HHeJ_P0092450 Pif1 protein_coding protein_coding MGP_C3HHeJ_T0092451.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151104 65160288 + Pif1 protein_coding retained_intron MGP_C3HHeJ_T0092452.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151112 65160288 + MGP_C3HHeJ_P0092452 Pif1 protein_coding protein_coding MGP_C3HHeJ_T0092453.1 MGP_C3HHeJ_G0034646.1 mouse_genomes_project 9 65151117 65152172 + MGP_C3HHeJ_P0092453 Pif1 protein_coding protein_coding MGP_C3HHeJ_T0099738.1 MGP_C3HHeJ_G0037932.1 mouse_genomes_project 9 120162366 120162447 - Gm22479 snRNA snRNA MGP_C3HHeJ_T0005338.1 MGP_C3HHeJ_G0004518.1 mouse_genomes_project 9 4698422 4724642 - AV064505 antisense antisense MGP_C3HHeJ_T0015928.1 MGP_C3HHeJ_G0014032.1 mouse_genomes_project 9 101050095 101050360 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005435.1 MGP_C3HHeJ_G0004580.1 mouse_genomes_project 9 97523078 97529152 + Gm16010 antisense antisense MGP_C3HHeJ_T0005436.1 MGP_C3HHeJ_G0004580.1 mouse_genomes_project 9 97524586 97525558 + Gm16010 antisense antisense MGP_C3HHeJ_T0091821.1 MGP_C3HHeJ_G0034457.1 mouse_genomes_project 9 48341110 48643190 - MGP_C3HHeJ_P0091821 Ncam1 protein_coding protein_coding MGP_C3HHeJ_T0091822.1 MGP_C3HHeJ_G0034457.1 mouse_genomes_project 9 48341122 48407692 - MGP_C3HHeJ_P0091822 Ncam1 protein_coding protein_coding MGP_C3HHeJ_T0091823.1 MGP_C3HHeJ_G0034457.1 mouse_genomes_project 9 48344023 48643137 - MGP_C3HHeJ_P0091823 Ncam1 protein_coding protein_coding MGP_C3HHeJ_T0091824.1 MGP_C3HHeJ_G0034457.1 mouse_genomes_project 9 48356241 48643155 - MGP_C3HHeJ_P0091824 Ncam1 protein_coding protein_coding MGP_C3HHeJ_T0091826.1 MGP_C3HHeJ_G0034457.1 mouse_genomes_project 9 48362577 48382582 - MGP_C3HHeJ_P0091826 Ncam1 protein_coding protein_coding MGP_C3HHeJ_T0091827.1 MGP_C3HHeJ_G0034457.1 mouse_genomes_project 9 48370187 48643023 - MGP_C3HHeJ_P0091827 Ncam1 protein_coding protein_coding MGP_C3HHeJ_T0100978.1 MGP_C3HHeJ_G0039172.1 mouse_genomes_project 9 65546228 65546360 - Gm22657 snoRNA snoRNA MGP_C3HHeJ_T0094129.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409153 109423127 - MGP_C3HHeJ_P0094129 Klhdc8b protein_coding protein_coding MGP_C3HHeJ_T0094130.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409175 109414229 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0094131.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409175 109412315 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0094132.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409175 109413888 - MGP_C3HHeJ_P0094132 Klhdc8b protein_coding protein_coding MGP_C3HHeJ_T0094133.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409349 109413915 - MGP_C3HHeJ_P0094133 Klhdc8b protein_coding protein_coding MGP_C3HHeJ_T0094134.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409490 109422622 - MGP_C3HHeJ_P0094134 Klhdc8b protein_coding protein_coding MGP_C3HHeJ_T0094135.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109409785 109411879 - Klhdc8b protein_coding processed_transcript MGP_C3HHeJ_T0094136.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109412765 109414277 - Klhdc8b protein_coding processed_transcript MGP_C3HHeJ_T0094137.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109412786 109414312 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0094138.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109414098 109422475 - Klhdc8b protein_coding processed_transcript MGP_C3HHeJ_T0094139.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109416183 109422475 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0094140.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109416185 109418496 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0094141.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109416376 109422619 - Klhdc8b protein_coding processed_transcript MGP_C3HHeJ_T0094142.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109419981 109421624 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0094143.1 MGP_C3HHeJ_G0034981.1 mouse_genomes_project 9 109420778 109422474 - Klhdc8b protein_coding retained_intron MGP_C3HHeJ_T0093837.1 MGP_C3HHeJ_G0034937.1 mouse_genomes_project 9 108467292 108470151 - MGP_C3HHeJ_P0093837 Cyb561d2 protein_coding protein_coding MGP_C3HHeJ_T0093838.1 MGP_C3HHeJ_G0034937.1 mouse_genomes_project 9 108467860 108470479 - MGP_C3HHeJ_P0093838 Cyb561d2 protein_coding protein_coding MGP_C3HHeJ_T0093839.1 MGP_C3HHeJ_G0034937.1 mouse_genomes_project 9 108467866 108469810 - MGP_C3HHeJ_P0093839 Cyb561d2 protein_coding protein_coding MGP_C3HHeJ_T0093840.1 MGP_C3HHeJ_G0034937.1 mouse_genomes_project 9 108468162 108470410 - Cyb561d2 protein_coding processed_transcript MGP_C3HHeJ_T0093841.1 MGP_C3HHeJ_G0034937.1 mouse_genomes_project 9 108468327 108470413 - MGP_C3HHeJ_P0093841 Cyb561d2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094372.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017775 111027773 + MGP_C3HHeJ_P0094372 Nme6 protein_coding protein_coding MGP_C3HHeJ_T0094373.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017785 111027337 + MGP_C3HHeJ_P0094373 Nme6 protein_coding protein_coding MGP_C3HHeJ_T0094374.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017807 111018626 + Nme6 protein_coding retained_intron MGP_C3HHeJ_T0094375.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017807 111027683 + Nme6 protein_coding processed_transcript MGP_C3HHeJ_T0094376.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017817 111026846 + MGP_C3HHeJ_P0094376 Nme6 protein_coding protein_coding MGP_C3HHeJ_T0094377.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017822 111027467 + Nme6 protein_coding processed_transcript MGP_C3HHeJ_T0094378.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017823 111027764 + Nme6 protein_coding processed_transcript MGP_C3HHeJ_T0094379.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017843 111020661 + Nme6 protein_coding retained_intron MGP_C3HHeJ_T0094380.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111017922 111027394 + MGP_C3HHeJ_P0094380 Nme6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094381.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111018083 111027388 + Nme6 protein_coding processed_transcript MGP_C3HHeJ_T0094382.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111018227 111026387 + Nme6 protein_coding retained_intron MGP_C3HHeJ_T0094383.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111018229 111027355 + Nme6 protein_coding processed_transcript MGP_C3HHeJ_T0094384.1 MGP_C3HHeJ_G0035021.1 mouse_genomes_project 9 111018327 111027924 + Nme6 protein_coding processed_transcript MGP_C3HHeJ_T0091049.1 MGP_C3HHeJ_G0034149.1 mouse_genomes_project 9 19502158 19514299 + MGP_C3HHeJ_P0091049 Plppr2 protein_coding protein_coding MGP_C3HHeJ_T0091050.1 MGP_C3HHeJ_G0034149.1 mouse_genomes_project 9 19503554 19513405 + MGP_C3HHeJ_P0091050 Plppr2 protein_coding protein_coding MGP_C3HHeJ_T0092069.1 MGP_C3HHeJ_G0034535.1 mouse_genomes_project 9 55920953 55924917 - MGP_C3HHeJ_P0092069 Odf3l1 protein_coding protein_coding MGP_C3HHeJ_T0009229.1 MGP_C3HHeJ_G0007409.1 mouse_genomes_project 9 100646956 100659314 + 4930519F24Rik lincRNA lincRNA MGP_C3HHeJ_T0091649.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43407525 43427809 + MGP_C3HHeJ_P0091649 Ift46 protein_coding protein_coding MGP_C3HHeJ_T0091650.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43407550 43417243 + MGP_C3HHeJ_P0091650 Ift46 protein_coding protein_coding MGP_C3HHeJ_T0091651.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43407641 43421419 + Ift46 protein_coding processed_transcript MGP_C3HHeJ_T0091652.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43407644 43409006 + Ift46 protein_coding processed_transcript MGP_C3HHeJ_T0091653.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43407690 43419156 + MGP_C3HHeJ_P0091653 Ift46 protein_coding protein_coding MGP_C3HHeJ_T0091654.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43407853 43417235 + MGP_C3HHeJ_P0091654 Ift46 protein_coding protein_coding MGP_C3HHeJ_T0091655.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43408290 43417304 + MGP_C3HHeJ_P0091655 Ift46 protein_coding protein_coding MGP_C3HHeJ_T0091656.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43410901 43425990 + MGP_C3HHeJ_P0091656 Ift46 protein_coding protein_coding MGP_C3HHeJ_T0091657.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43412282 43417313 + Ift46 protein_coding retained_intron MGP_C3HHeJ_T0091658.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43419409 43422659 + Ift46 protein_coding processed_transcript MGP_C3HHeJ_T0091659.1 MGP_C3HHeJ_G0034401.1 mouse_genomes_project 9 43424538 43425831 + Ift46 protein_coding retained_intron MGP_C3HHeJ_T0011017.1 MGP_C3HHeJ_G0009150.1 mouse_genomes_project 9 113455284 113455360 - Mir128-2 miRNA miRNA MGP_C3HHeJ_T0091035.1 MGP_C3HHeJ_G0034141.1 mouse_genomes_project 9 19284101 19311053 + MGP_C3HHeJ_P0091035 Ldlr protein_coding protein_coding MGP_C3HHeJ_T0093695.1 MGP_C3HHeJ_G0034910.1 mouse_genomes_project 9 107269791 107279550 + MGP_C3HHeJ_P0093695 Dusp7 protein_coding protein_coding MGP_C3HHeJ_T0093696.1 MGP_C3HHeJ_G0034910.1 mouse_genomes_project 9 107270768 107272025 + Dusp7 protein_coding processed_transcript MGP_C3HHeJ_T0093697.1 MGP_C3HHeJ_G0034910.1 mouse_genomes_project 9 107271893 107276298 + MGP_C3HHeJ_P0093697 Dusp7 protein_coding protein_coding MGP_C3HHeJ_T0093698.1 MGP_C3HHeJ_G0034910.1 mouse_genomes_project 9 107277072 107279550 + Dusp7 protein_coding processed_transcript MGP_C3HHeJ_T0093223.1 MGP_C3HHeJ_G0034814.1 mouse_genomes_project 9 92935950 93006212 + MGP_C3HHeJ_P0093223 Plod2 protein_coding protein_coding MGP_C3HHeJ_T0093224.1 MGP_C3HHeJ_G0034814.1 mouse_genomes_project 9 92935991 93006204 + MGP_C3HHeJ_P0093224 Plod2 protein_coding protein_coding MGP_C3HHeJ_T0093225.1 MGP_C3HHeJ_G0034814.1 mouse_genomes_project 9 92969203 92989469 + Plod2 protein_coding retained_intron MGP_C3HHeJ_T0093226.1 MGP_C3HHeJ_G0034814.1 mouse_genomes_project 9 92993129 92998849 + Plod2 protein_coding retained_intron MGP_C3HHeJ_T0093227.1 MGP_C3HHeJ_G0034814.1 mouse_genomes_project 9 92999124 93000400 + Plod2 protein_coding retained_intron MGP_C3HHeJ_T0093221.1 MGP_C3HHeJ_G0034813.1 mouse_genomes_project 9 92845949 92881615 + MGP_C3HHeJ_P0093221 Plscr4 protein_coding protein_coding MGP_C3HHeJ_T0093222.1 MGP_C3HHeJ_G0034813.1 mouse_genomes_project 9 92845970 92873570 + Plscr4 protein_coding retained_intron MGP_C3HHeJ_T0091036.1 MGP_C3HHeJ_G0034142.1 mouse_genomes_project 9 19316578 19322605 - MGP_C3HHeJ_P0091036 Spc24 protein_coding protein_coding MGP_C3HHeJ_T0015916.1 MGP_C3HHeJ_G0014020.1 mouse_genomes_project 9 96095511 96095953 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091371.1 MGP_C3HHeJ_G0034256.1 mouse_genomes_project 9 36017240 36032033 + MGP_C3HHeJ_P0091371 Olfr874 protein_coding protein_coding MGP_C3HHeJ_T0009187.1 MGP_C3HHeJ_G0007377.1 mouse_genomes_project 9 75288248 75293587 + 4933433G15Rik lincRNA lincRNA MGP_C3HHeJ_T0009188.1 MGP_C3HHeJ_G0007377.1 mouse_genomes_project 9 75288248 75295764 + 4933433G15Rik lincRNA lincRNA MGP_C3HHeJ_T0092041.1 MGP_C3HHeJ_G0034526.1 mouse_genomes_project 9 54558631 54562530 + MGP_C3HHeJ_P0092041 Isl2 protein_coding protein_coding MGP_C3HHeJ_T0092042.1 MGP_C3HHeJ_G0034526.1 mouse_genomes_project 9 54561107 54566143 + MGP_C3HHeJ_P0092042 Isl2 protein_coding protein_coding MGP_C3HHeJ_T0092043.1 MGP_C3HHeJ_G0034526.1 mouse_genomes_project 9 54561166 54566143 + MGP_C3HHeJ_P0092043 Isl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092044.1 MGP_C3HHeJ_G0034526.1 mouse_genomes_project 9 54561166 54566141 + MGP_C3HHeJ_P0092044 Isl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092045.1 MGP_C3HHeJ_G0034526.1 mouse_genomes_project 9 54562295 54564240 + Isl2 protein_coding retained_intron MGP_C3HHeJ_T0092803.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 74933807 74983780 + Myo5a protein_coding retained_intron MGP_C3HHeJ_T0092804.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 74933986 75093641 + MGP_C3HHeJ_P0092804 Myo5a protein_coding protein_coding MGP_C3HHeJ_T0092805.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 74934004 74998085 + Myo5a protein_coding retained_intron MGP_C3HHeJ_T0092806.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 74934184 75088495 + MGP_C3HHeJ_P0092806 Myo5a protein_coding protein_coding MGP_C3HHeJ_T0092807.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 74934363 75046530 + MGP_C3HHeJ_P0092807 Myo5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092808.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 74934398 75088898 + MGP_C3HHeJ_P0092808 Myo5a protein_coding protein_coding MGP_C3HHeJ_T0092809.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75008742 75015365 + Myo5a protein_coding retained_intron MGP_C3HHeJ_T0092810.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75054157 75088429 + Myo5a protein_coding processed_transcript MGP_C3HHeJ_T0092811.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75054220 75064051 + Myo5a protein_coding retained_intron MGP_C3HHeJ_T0092812.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75055869 75066151 + MGP_C3HHeJ_P0092812 Myo5a protein_coding protein_coding MGP_C3HHeJ_T0092813.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75055968 75087938 + MGP_C3HHeJ_P0092813 Myo5a protein_coding protein_coding MGP_C3HHeJ_T0092814.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75055970 75071270 + MGP_C3HHeJ_P0092814 Myo5a protein_coding protein_coding MGP_C3HHeJ_T0092815.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75059891 75062945 + Myo5a protein_coding retained_intron MGP_C3HHeJ_T0092816.1 MGP_C3HHeJ_G0034716.1 mouse_genomes_project 9 75063723 75073703 + Myo5a protein_coding retained_intron MGP_C3HHeJ_T0091289.1 MGP_C3HHeJ_G0034235.1 mouse_genomes_project 9 34814955 34817804 - MGP_C3HHeJ_P0091289 A630095E13Rik protein_coding protein_coding MGP_C3HHeJ_T0091290.1 MGP_C3HHeJ_G0034235.1 mouse_genomes_project 9 34814955 34817804 - MGP_C3HHeJ_P0091290 A630095E13Rik protein_coding protein_coding MGP_C3HHeJ_T0091291.1 MGP_C3HHeJ_G0034235.1 mouse_genomes_project 9 34814957 34824261 - A630095E13Rik protein_coding retained_intron MGP_C3HHeJ_T0094962.1 MGP_C3HHeJ_G0035170.1 mouse_genomes_project 9 125891301 125897972 - MGP_C3HHeJ_P0094962 Ccr1 protein_coding protein_coding MGP_C3HHeJ_T0009255.1 MGP_C3HHeJ_G0007429.1 mouse_genomes_project 9 112855323 112860242 - Gm42523 lincRNA lincRNA MGP_C3HHeJ_T0009186.1 MGP_C3HHeJ_G0007376.1 mouse_genomes_project 9 74708036 74710511 - Gm28182 lincRNA lincRNA MGP_C3HHeJ_T0009233.1 MGP_C3HHeJ_G0007413.1 mouse_genomes_project 9 103058688 103067486 + Gm26846 lincRNA lincRNA MGP_C3HHeJ_T0015912.1 MGP_C3HHeJ_G0014016.1 mouse_genomes_project 9 94841247 94841821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0090960.1 MGP_C3HHeJ_G0034116.1 mouse_genomes_project 9 18526859 18540629 + MGP_C3HHeJ_P0090960 Icam1 protein_coding protein_coding MGP_C3HHeJ_T0091623.1 MGP_C3HHeJ_G0034397.1 mouse_genomes_project 9 43225311 43264014 + MGP_C3HHeJ_P0091623 Ddx6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002328.1 MGP_C3HHeJ_G0002247.1 mouse_genomes_project 9 71776932 71779225 - TEC TEC MGP_C3HHeJ_T0091201.1 MGP_C3HHeJ_G0034205.1 mouse_genomes_project 9 30329306 30356044 + MGP_C3HHeJ_P0091201 Kcnj1 protein_coding protein_coding MGP_C3HHeJ_T0091202.1 MGP_C3HHeJ_G0034205.1 mouse_genomes_project 9 30350838 30356044 + MGP_C3HHeJ_P0091202 Kcnj1 protein_coding protein_coding MGP_C3HHeJ_T0005487.1 MGP_C3HHeJ_G0004620.1 mouse_genomes_project 9 122777351 122783708 - 4930593C16Rik antisense antisense MGP_C3HHeJ_T0015835.1 MGP_C3HHeJ_G0013939.1 mouse_genomes_project 9 43924230 43924466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0005468.1 MGP_C3HHeJ_G0004604.1 mouse_genomes_project 9 108696508 108697284 + Gm37850 antisense antisense MGP_C3HHeJ_T0091038.1 MGP_C3HHeJ_G0034144.1 mouse_genomes_project 9 19364171 19417804 - MGP_C3HHeJ_P0091038 Dock6 protein_coding protein_coding MGP_C3HHeJ_T0091084.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20097467 20529178 + MGP_C3HHeJ_P0091084 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091085.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20097474 20529172 + MGP_C3HHeJ_P0091085 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091086.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20097483 20135987 + MGP_C3HHeJ_P0091086 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091087.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20097483 20529172 + MGP_C3HHeJ_P0091087 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091088.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20097619 20136033 + MGP_C3HHeJ_P0091088 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091089.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20112545 20529178 + MGP_C3HHeJ_P0091089 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091090.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20134396 20201559 + Bbs9 protein_coding processed_transcript MGP_C3HHeJ_T0091091.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20196463 20257166 + Bbs9 protein_coding processed_transcript MGP_C3HHeJ_T0091092.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20263797 20529178 + MGP_C3HHeJ_P0091092 Bbs9 protein_coding protein_coding MGP_C3HHeJ_T0091093.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20271709 20529178 + MGP_C3HHeJ_P0091093 Bbs9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091094.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20288010 20314686 + Bbs9 protein_coding retained_intron MGP_C3HHeJ_T0091095.1 MGP_C3HHeJ_G0034170.1 mouse_genomes_project 9 20312922 20529172 + Bbs9 protein_coding retained_intron MGP_C3HHeJ_T0009193.1 MGP_C3HHeJ_G0007382.1 mouse_genomes_project 9 80257365 80259729 - Gm17477 lincRNA lincRNA MGP_C3HHeJ_T0094963.1 MGP_C3HHeJ_G0035171.1 mouse_genomes_project 9 125906140 125907600 - MGP_C3HHeJ_P0094963 Ccr1l1 protein_coding protein_coding MGP_C3HHeJ_T0091870.1 MGP_C3HHeJ_G0034472.1 mouse_genomes_project 9 49639682 49643572 + MGP_C3HHeJ_P0091870 Cryab protein_coding protein_coding MGP_C3HHeJ_T0100952.1 MGP_C3HHeJ_G0039146.1 mouse_genomes_project 9 18395863 18395943 + Gm23008 snoRNA snoRNA MGP_C3HHeJ_T0018367.1 MGP_C3HHeJ_G0015523.1 mouse_genomes_project 9 118910847 118912980 + Gm17396 processed_transcript processed_transcript MGP_C3HHeJ_T0009189.1 MGP_C3HHeJ_G0007378.1 mouse_genomes_project 9 77027943 77033217 + Gm19541 lincRNA lincRNA MGP_C3HHeJ_T0092790.1 MGP_C3HHeJ_G0034714.1 mouse_genomes_project 9 74809869 74895389 + MGP_C3HHeJ_P0092790 Fam214a protein_coding protein_coding MGP_C3HHeJ_T0092791.1 MGP_C3HHeJ_G0034714.1 mouse_genomes_project 9 74835339 74895389 + MGP_C3HHeJ_P0092791 Fam214a protein_coding protein_coding MGP_C3HHeJ_T0094926.1 MGP_C3HHeJ_G0035156.1 mouse_genomes_project 9 125008214 125031766 + MGP_C3HHeJ_P0094926 Exosc7 protein_coding protein_coding MGP_C3HHeJ_T0094927.1 MGP_C3HHeJ_G0035156.1 mouse_genomes_project 9 125008257 125014651 + Exosc7 protein_coding retained_intron MGP_C3HHeJ_T0094928.1 MGP_C3HHeJ_G0035156.1 mouse_genomes_project 9 125022027 125026567 + Exosc7 protein_coding processed_transcript MGP_C3HHeJ_T0009127.1 MGP_C3HHeJ_G0007326.1 mouse_genomes_project 9 19276054 19283976 - Gm26511 lincRNA lincRNA MGP_C3HHeJ_T0005431.1 MGP_C3HHeJ_G0004577.1 mouse_genomes_project 9 96502846 96504318 - C78334 antisense antisense MGP_C3HHeJ_T0005432.1 MGP_C3HHeJ_G0004577.1 mouse_genomes_project 9 96502854 96509597 - C78334 antisense antisense MGP_C3HHeJ_T0005362.1 MGP_C3HHeJ_G0004535.1 mouse_genomes_project 9 43832571 43834736 + Gm17099 antisense antisense MGP_C3HHeJ_T0005448.1 MGP_C3HHeJ_G0004591.1 mouse_genomes_project 9 106325402 106335049 + Gm19667 antisense antisense MGP_C3HHeJ_T0091500.1 MGP_C3HHeJ_G0034352.1 mouse_genomes_project 9 39276682 39277537 + protein_coding retained_intron MGP_C3HHeJ_T0002314.1 MGP_C3HHeJ_G0002233.1 mouse_genomes_project 9 30496822 30498749 - TEC TEC MGP_C3HHeJ_T0090719.1 MGP_C3HHeJ_G0034015.1 mouse_genomes_project 9 5058927 5080081 - MGP_C3HHeJ_P0090719 9230110C19Rik protein_coding protein_coding MGP_C3HHeJ_T0101280.1 MGP_C3HHeJ_G0039384.1 mouse_genomes_project 9 78532165 78533985 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101281.1 MGP_C3HHeJ_G0039384.1 mouse_genomes_project 9 78532480 78534559 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101282.1 MGP_C3HHeJ_G0039384.1 mouse_genomes_project 9 78533031 78535392 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0094778.1 MGP_C3HHeJ_G0035111.1 mouse_genomes_project 9 121713975 121743928 + MGP_C3HHeJ_P0094778 Ttc21a protein_coding protein_coding MGP_C3HHeJ_T0094779.1 MGP_C3HHeJ_G0035111.1 mouse_genomes_project 9 121714004 121743188 + Ttc21a protein_coding retained_intron MGP_C3HHeJ_T0094780.1 MGP_C3HHeJ_G0035111.1 mouse_genomes_project 9 121714005 121738807 + Ttc21a protein_coding retained_intron MGP_C3HHeJ_T0094781.1 MGP_C3HHeJ_G0035111.1 mouse_genomes_project 9 121737748 121742304 + Ttc21a protein_coding retained_intron MGP_C3HHeJ_T0099717.1 MGP_C3HHeJ_G0037911.1 mouse_genomes_project 9 84394356 84394541 + Gm26146 snRNA snRNA MGP_C3HHeJ_T0092432.1 MGP_C3HHeJ_G0034637.1 mouse_genomes_project 9 64894257 64909200 + MGP_C3HHeJ_P0092432 Pdcd7 protein_coding protein_coding MGP_C3HHeJ_T0094568.1 MGP_C3HHeJ_G0035053.1 mouse_genomes_project 9 112344669 112347451 - MGP_C3HHeJ_P0094568 Ccrl2 protein_coding protein_coding MGP_C3HHeJ_T0094569.1 MGP_C3HHeJ_G0035053.1 mouse_genomes_project 9 112345014 112347700 - MGP_C3HHeJ_P0094569 Ccrl2 protein_coding protein_coding MGP_C3HHeJ_T0094570.1 MGP_C3HHeJ_G0035053.1 mouse_genomes_project 9 112346210 112347427 - MGP_C3HHeJ_P0094570 Ccrl2 protein_coding protein_coding MGP_C3HHeJ_T0093699.1 MGP_C3HHeJ_G0034911.1 mouse_genomes_project 9 107336012 107337794 + MGP_C3HHeJ_P0093699 protein_coding protein_coding MGP_C3HHeJ_T0090870.1 MGP_C3HHeJ_G0034075.1 mouse_genomes_project 9 16719854 16720796 - MGP_C3HHeJ_P0090870 Olfr846 protein_coding protein_coding MGP_C3HHeJ_T0092885.1 MGP_C3HHeJ_G0034739.1 mouse_genomes_project 9 78127934 78156896 - MGP_C3HHeJ_P0092885 Fbxo9 protein_coding protein_coding MGP_C3HHeJ_T0092886.1 MGP_C3HHeJ_G0034739.1 mouse_genomes_project 9 78127937 78157305 - MGP_C3HHeJ_P0092886 Fbxo9 protein_coding protein_coding MGP_C3HHeJ_T0092887.1 MGP_C3HHeJ_G0034739.1 mouse_genomes_project 9 78128276 78132262 - Fbxo9 protein_coding retained_intron MGP_C3HHeJ_T0092888.1 MGP_C3HHeJ_G0034739.1 mouse_genomes_project 9 78133228 78135217 - Fbxo9 protein_coding retained_intron MGP_C3HHeJ_T0092889.1 MGP_C3HHeJ_G0034739.1 mouse_genomes_project 9 78143070 78156844 - MGP_C3HHeJ_P0092889 Fbxo9 protein_coding protein_coding MGP_C3HHeJ_T0092890.1 MGP_C3HHeJ_G0034739.1 mouse_genomes_project 9 78148019 78156827 - MGP_C3HHeJ_P0092890 Fbxo9 protein_coding protein_coding MGP_C3HHeJ_T0015904.1 MGP_C3HHeJ_G0014008.1 mouse_genomes_project 9 91057852 91058015 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093282.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96683517 96804480 + MGP_C3HHeJ_P0093282 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093283.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96683548 96805497 + MGP_C3HHeJ_P0093283 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093284.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96683580 96734646 + Tfdp2 protein_coding processed_transcript MGP_C3HHeJ_T0093285.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96683654 96804487 + MGP_C3HHeJ_P0093285 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093286.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96689363 96781818 + MGP_C3HHeJ_P0093286 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093287.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96745521 96797102 + MGP_C3HHeJ_P0093287 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093288.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96745558 96774744 + MGP_C3HHeJ_P0093288 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093289.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96745575 96804483 + MGP_C3HHeJ_P0093289 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093290.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96746099 96805421 + MGP_C3HHeJ_P0093290 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0093291.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96775229 96778370 + Tfdp2 protein_coding retained_intron MGP_C3HHeJ_T0093292.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96791809 96794936 + Tfdp2 protein_coding retained_intron MGP_C3HHeJ_T0093293.1 MGP_C3HHeJ_G0034826.1 mouse_genomes_project 9 96797085 96804419 + MGP_C3HHeJ_P0093293 Tfdp2 protein_coding protein_coding MGP_C3HHeJ_T0092541.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667523 66694141 - MGP_C3HHeJ_P0092541 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092542.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667523 66688794 - MGP_C3HHeJ_P0092542 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092543.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667523 66694280 - MGP_C3HHeJ_P0092543 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092544.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667525 66688689 - MGP_C3HHeJ_P0092544 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092545.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667526 66694083 - MGP_C3HHeJ_P0092545 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092546.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667526 66688849 - MGP_C3HHeJ_P0092546 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092547.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667539 66694060 - MGP_C3HHeJ_P0092547 Tpm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092548.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667539 66694075 - MGP_C3HHeJ_P0092548 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092549.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667548 66694149 - MGP_C3HHeJ_P0092549 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092550.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66667555 66688665 - MGP_C3HHeJ_P0092550 Tpm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092551.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66669257 66694046 - MGP_C3HHeJ_P0092551 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092552.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66669259 66688596 - MGP_C3HHeJ_P0092552 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092553.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66672826 66694138 - MGP_C3HHeJ_P0092553 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092554.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66672826 66694087 - MGP_C3HHeJ_P0092554 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092555.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66672900 66688728 - MGP_C3HHeJ_P0092555 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092556.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66672923 66694017 - MGP_C3HHeJ_P0092556 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092557.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66672982 66688620 - MGP_C3HHeJ_P0092557 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092558.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66673782 66694136 - MGP_C3HHeJ_P0092558 Tpm1 protein_coding protein_coding MGP_C3HHeJ_T0092559.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66674854 66677744 - Tpm1 protein_coding processed_transcript MGP_C3HHeJ_T0092560.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66677138 66693992 - Tpm1 protein_coding retained_intron MGP_C3HHeJ_T0092561.1 MGP_C3HHeJ_G0034667.1 mouse_genomes_project 9 66678696 66694065 - Tpm1 protein_coding processed_transcript MGP_C3HHeJ_T0094246.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109785058 109799264 + MGP_C3HHeJ_P0094246 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094247.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109785058 109807648 + MGP_C3HHeJ_P0094247 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094248.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109785084 109800109 + Ip6k2 protein_coding retained_intron MGP_C3HHeJ_T0094249.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109785127 109798252 + Ip6k2 protein_coding retained_intron MGP_C3HHeJ_T0094250.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109785127 109798966 + MGP_C3HHeJ_P0094250 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094251.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109785127 109798619 + MGP_C3HHeJ_P0094251 Ip6k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094252.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109797268 109800544 + MGP_C3HHeJ_P0094252 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094253.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109797268 109807653 + MGP_C3HHeJ_P0094253 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094254.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109797338 109798716 + MGP_C3HHeJ_P0094254 Ip6k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094255.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109797405 109799269 + MGP_C3HHeJ_P0094255 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094256.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109797626 109798967 + MGP_C3HHeJ_P0094256 Ip6k2 protein_coding protein_coding MGP_C3HHeJ_T0094257.1 MGP_C3HHeJ_G0034995.1 mouse_genomes_project 9 109799461 109800647 + Ip6k2 protein_coding retained_intron MGP_C3HHeJ_T0011646.1 MGP_C3HHeJ_G0009779.1 mouse_genomes_project 9 80167333 80167619 + Gm25433 misc_RNA misc_RNA MGP_C3HHeJ_T0091438.1 MGP_C3HHeJ_G0034316.1 mouse_genomes_project 9 37855514 37865398 - MGP_C3HHeJ_P0091438 Olfr44 protein_coding protein_coding MGP_C3HHeJ_T0094670.1 MGP_C3HHeJ_G0035077.1 mouse_genomes_project 9 116269448 116289280 + MGP_C3HHeJ_P0094670 Cmtm6 protein_coding protein_coding MGP_C3HHeJ_T0009242.1 MGP_C3HHeJ_G0007421.1 mouse_genomes_project 9 108269219 108269993 - 4930429P21Rik lincRNA lincRNA MGP_C3HHeJ_T0009243.1 MGP_C3HHeJ_G0007421.1 mouse_genomes_project 9 108269728 108271948 - 4930429P21Rik lincRNA lincRNA MGP_C3HHeJ_T0091285.1 MGP_C3HHeJ_G0034231.1 mouse_genomes_project 9 34598004 34606147 + MGP_C3HHeJ_P0091285 Gm7257 protein_coding protein_coding MGP_C3HHeJ_T0091995.1 MGP_C3HHeJ_G0034513.1 mouse_genomes_project 9 53749096 53758224 + MGP_C3HHeJ_P0091995 Crabp1 protein_coding protein_coding MGP_C3HHeJ_T0092628.1 MGP_C3HHeJ_G0034686.1 mouse_genomes_project 9 70454833 70556089 + MGP_C3HHeJ_P0092628 Adam10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092629.1 MGP_C3HHeJ_G0034686.1 mouse_genomes_project 9 70454833 70557936 + MGP_C3HHeJ_P0092629 Adam10 protein_coding protein_coding MGP_C3HHeJ_T0092630.1 MGP_C3HHeJ_G0034686.1 mouse_genomes_project 9 70454852 70525952 + MGP_C3HHeJ_P0092630 Adam10 protein_coding protein_coding MGP_C3HHeJ_T0092631.1 MGP_C3HHeJ_G0034686.1 mouse_genomes_project 9 70553760 70556085 + Adam10 protein_coding retained_intron MGP_C3HHeJ_T0092972.1 MGP_C3HHeJ_G0034761.1 mouse_genomes_project 9 80467321 80602337 - MGP_C3HHeJ_P0092972 Impg1 protein_coding protein_coding MGP_C3HHeJ_T0092973.1 MGP_C3HHeJ_G0034761.1 mouse_genomes_project 9 80467958 80602380 - MGP_C3HHeJ_P0092973 Impg1 protein_coding protein_coding MGP_C3HHeJ_T0092974.1 MGP_C3HHeJ_G0034761.1 mouse_genomes_project 9 80543187 80602337 - MGP_C3HHeJ_P0092974 Impg1 protein_coding protein_coding MGP_C3HHeJ_T0091388.1 MGP_C3HHeJ_G0034272.1 mouse_genomes_project 9 36513219 36514168 + MGP_C3HHeJ_P0091388 Olfr894 protein_coding protein_coding MGP_C3HHeJ_T0099734.1 MGP_C3HHeJ_G0037928.1 mouse_genomes_project 9 109738942 109739049 - Gm24259 snRNA snRNA MGP_C3HHeJ_T0092017.1 MGP_C3HHeJ_G0034522.1 mouse_genomes_project 9 54212761 54228217 + MGP_C3HHeJ_P0092017 Fbxo22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092018.1 MGP_C3HHeJ_G0034522.1 mouse_genomes_project 9 54212763 54228210 + MGP_C3HHeJ_P0092018 Fbxo22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092019.1 MGP_C3HHeJ_G0034522.1 mouse_genomes_project 9 54212827 54228224 + MGP_C3HHeJ_P0092019 Fbxo22 protein_coding protein_coding MGP_C3HHeJ_T0092020.1 MGP_C3HHeJ_G0034522.1 mouse_genomes_project 9 54217438 54224815 + MGP_C3HHeJ_P0092020 Fbxo22 protein_coding protein_coding MGP_C3HHeJ_T0094821.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122817201 122962873 - Ulk4 protein_coding processed_transcript MGP_C3HHeJ_T0094822.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122821387 122898664 - Ulk4 protein_coding retained_intron MGP_C3HHeJ_T0094823.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122821387 123111117 - MGP_C3HHeJ_P0094823 Ulk4 protein_coding protein_coding MGP_C3HHeJ_T0094824.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122823337 123111090 - MGP_C3HHeJ_P0094824 Ulk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094825.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122927400 123111101 - MGP_C3HHeJ_P0094825 Ulk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094826.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122927404 123111092 - MGP_C3HHeJ_P0094826 Ulk4 protein_coding protein_coding MGP_C3HHeJ_T0094827.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 122955504 123111117 - Ulk4 protein_coding retained_intron MGP_C3HHeJ_T0094828.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 123014661 123093035 - MGP_C3HHeJ_P0094828 Ulk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094829.1 MGP_C3HHeJ_G0035124.1 mouse_genomes_project 9 123018150 123046214 - Ulk4 protein_coding processed_transcript MGP_C3HHeJ_T0091374.1 MGP_C3HHeJ_G0034259.1 mouse_genomes_project 9 36116723 36117659 + MGP_C3HHeJ_P0091374 Olfr877 protein_coding protein_coding MGP_C3HHeJ_T0090723.1 MGP_C3HHeJ_G0034019.1 mouse_genomes_project 9 5960567 6034186 + MGP_C3HHeJ_P0090723 Pgr protein_coding protein_coding MGP_C3HHeJ_T0090724.1 MGP_C3HHeJ_G0034019.1 mouse_genomes_project 9 5961153 6013105 + Pgr protein_coding retained_intron MGP_C3HHeJ_T0090725.1 MGP_C3HHeJ_G0034019.1 mouse_genomes_project 9 5961202 6031004 + MGP_C3HHeJ_P0090725 Pgr protein_coding protein_coding MGP_C3HHeJ_T0002315.1 MGP_C3HHeJ_G0002234.1 mouse_genomes_project 9 30926838 30928192 + TEC TEC MGP_C3HHeJ_T0091570.1 MGP_C3HHeJ_G0034375.1 mouse_genomes_project 9 42708549 42710453 - MGP_C3HHeJ_P0091570 protein_coding protein_coding MGP_C3HHeJ_T0000318.1 MGP_C3HHeJ_G0000268.1 mouse_genomes_project 9 125002364 125002433 + mt-Ta Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0015947.1 MGP_C3HHeJ_G0014051.1 mouse_genomes_project 9 109535759 109552194 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091694.1 MGP_C3HHeJ_G0034416.1 mouse_genomes_project 9 43832300 43863818 - MGP_C3HHeJ_P0091694 Tmprss4 protein_coding protein_coding MGP_C3HHeJ_T0091695.1 MGP_C3HHeJ_G0034416.1 mouse_genomes_project 9 43832301 43863816 - MGP_C3HHeJ_P0091695 Tmprss4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091696.1 MGP_C3HHeJ_G0034416.1 mouse_genomes_project 9 43832879 43863786 - Tmprss4 protein_coding processed_transcript MGP_C3HHeJ_T0091697.1 MGP_C3HHeJ_G0034416.1 mouse_genomes_project 9 43832879 43863702 - MGP_C3HHeJ_P0091697 Tmprss4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091698.1 MGP_C3HHeJ_G0034416.1 mouse_genomes_project 9 43834371 43840227 - Tmprss4 protein_coding retained_intron MGP_C3HHeJ_T0015902.1 MGP_C3HHeJ_G0014006.1 mouse_genomes_project 9 91043127 91043728 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093658.1 MGP_C3HHeJ_G0034901.1 mouse_genomes_project 9 106722515 106828505 - MGP_C3HHeJ_P0093658 Col6a5 protein_coding protein_coding MGP_C3HHeJ_T0093659.1 MGP_C3HHeJ_G0034901.1 mouse_genomes_project 9 106723821 106840072 - MGP_C3HHeJ_P0093659 Col6a5 protein_coding protein_coding MGP_C3HHeJ_T0093660.1 MGP_C3HHeJ_G0034901.1 mouse_genomes_project 9 106740915 106747010 - Col6a5 protein_coding retained_intron MGP_C3HHeJ_T0011640.1 MGP_C3HHeJ_G0009773.1 mouse_genomes_project 9 19237576 19237760 + Gm27373 misc_RNA misc_RNA MGP_C3HHeJ_T0091699.1 MGP_C3HHeJ_G0034417.1 mouse_genomes_project 9 43841580 43852712 + BC049352 protein_coding lincRNA MGP_C3HHeJ_T0091700.1 MGP_C3HHeJ_G0034417.1 mouse_genomes_project 9 43841607 43913272 + BC049352 protein_coding lincRNA MGP_C3HHeJ_T0091701.1 MGP_C3HHeJ_G0034417.1 mouse_genomes_project 9 43855509 43913272 + BC049352 protein_coding lincRNA MGP_C3HHeJ_T0091702.1 MGP_C3HHeJ_G0034417.1 mouse_genomes_project 9 43855509 43913239 + MGP_C3HHeJ_P0091702 BC049352 protein_coding protein_coding MGP_C3HHeJ_T0091518.1 MGP_C3HHeJ_G0034358.1 mouse_genomes_project 9 40780970 40791158 - MGP_C3HHeJ_P0091518 Sc5d protein_coding protein_coding MGP_C3HHeJ_T0091519.1 MGP_C3HHeJ_G0034358.1 mouse_genomes_project 9 40781541 40791058 - MGP_C3HHeJ_P0091519 Sc5d protein_coding protein_coding MGP_C3HHeJ_T0094873.1 MGP_C3HHeJ_G0035136.1 mouse_genomes_project 9 123719330 123728763 - MGP_C3HHeJ_P0094873 Higd1a protein_coding protein_coding MGP_C3HHeJ_T0091178.1 MGP_C3HHeJ_G0034199.1 mouse_genomes_project 9 29177815 29231276 + MGP_C3HHeJ_P0091178 Prdm10 protein_coding protein_coding MGP_C3HHeJ_T0091179.1 MGP_C3HHeJ_G0034199.1 mouse_genomes_project 9 29211439 29285987 + MGP_C3HHeJ_P0091179 Prdm10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091180.1 MGP_C3HHeJ_G0034199.1 mouse_genomes_project 9 29213219 29231265 + Prdm10 protein_coding retained_intron MGP_C3HHeJ_T0091181.1 MGP_C3HHeJ_G0034199.1 mouse_genomes_project 9 29213518 29282794 + MGP_C3HHeJ_P0091181 Prdm10 protein_coding protein_coding MGP_C3HHeJ_T0092851.1 MGP_C3HHeJ_G0034732.1 mouse_genomes_project 9 76925379 77027011 - MGP_C3HHeJ_P0092851 Tinag protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092852.1 MGP_C3HHeJ_G0034732.1 mouse_genomes_project 9 76925379 77027056 - MGP_C3HHeJ_P0092852 Tinag protein_coding protein_coding MGP_C3HHeJ_T0098590.1 MGP_C3HHeJ_G0036784.1 mouse_genomes_project 9 125689739 125709716 - Gm17021 sense_overlapping sense_overlapping MGP_C3HHeJ_T0015828.1 MGP_C3HHeJ_G0013932.1 mouse_genomes_project 9 33587965 33588254 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091389.1 MGP_C3HHeJ_G0034273.1 mouse_genomes_project 9 36548290 36549232 + MGP_C3HHeJ_P0091389 Olfr143 protein_coding protein_coding MGP_C3HHeJ_T0091433.1 MGP_C3HHeJ_G0034311.1 mouse_genomes_project 9 37560525 37561461 + MGP_C3HHeJ_P0091433 Olfr944 protein_coding protein_coding MGP_C3HHeJ_T0093153.1 MGP_C3HHeJ_G0034799.1 mouse_genomes_project 9 89863817 89905972 - MGP_C3HHeJ_P0093153 AF529169 protein_coding protein_coding MGP_C3HHeJ_T0093154.1 MGP_C3HHeJ_G0034799.1 mouse_genomes_project 9 89867710 89881910 - MGP_C3HHeJ_P0093154 AF529169 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092230.1 MGP_C3HHeJ_G0034583.1 mouse_genomes_project 9 58793423 58800495 - MGP_C3HHeJ_P0092230 Tmem202 protein_coding protein_coding MGP_C3HHeJ_T0091963.1 MGP_C3HHeJ_G0034501.1 mouse_genomes_project 9 52856129 52856609 + MGP_C3HHeJ_P0091963 Gm16380 protein_coding protein_coding MGP_C3HHeJ_T0015895.1 MGP_C3HHeJ_G0013999.1 mouse_genomes_project 9 88374681 88376152 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015868.1 MGP_C3HHeJ_G0013972.1 mouse_genomes_project 9 76604163 76604917 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0093603.1 MGP_C3HHeJ_G0034894.1 mouse_genomes_project 9 105960069 105962482 - MGP_C3HHeJ_P0093603 Nudt16 protein_coding protein_coding MGP_C3HHeJ_T0093604.1 MGP_C3HHeJ_G0034894.1 mouse_genomes_project 9 105960498 105962975 - MGP_C3HHeJ_P0093604 Nudt16 protein_coding protein_coding MGP_C3HHeJ_T0093605.1 MGP_C3HHeJ_G0034894.1 mouse_genomes_project 9 105960842 105962950 - Nudt16 protein_coding retained_intron MGP_C3HHeJ_T0093606.1 MGP_C3HHeJ_G0034894.1 mouse_genomes_project 9 105960842 105962950 - Nudt16 protein_coding retained_intron MGP_C3HHeJ_T0093607.1 MGP_C3HHeJ_G0034894.1 mouse_genomes_project 9 105961376 105962943 - MGP_C3HHeJ_P0093607 Nudt16 protein_coding protein_coding MGP_C3HHeJ_T0093096.1 MGP_C3HHeJ_G0034784.1 mouse_genomes_project 9 87401552 87438283 + MGP_C3HHeJ_P0093096 Mrap2 protein_coding protein_coding MGP_C3HHeJ_T0093097.1 MGP_C3HHeJ_G0034784.1 mouse_genomes_project 9 87401552 87438283 + MGP_C3HHeJ_P0093097 Mrap2 protein_coding protein_coding MGP_C3HHeJ_T0093098.1 MGP_C3HHeJ_G0034784.1 mouse_genomes_project 9 87401589 87438283 + MGP_C3HHeJ_P0093098 Mrap2 protein_coding protein_coding MGP_C3HHeJ_T0091427.1 MGP_C3HHeJ_G0034305.1 mouse_genomes_project 9 37352050 37353867 - MGP_C3HHeJ_P0091427 Olfr146 protein_coding protein_coding MGP_C3HHeJ_T0100959.1 MGP_C3HHeJ_G0039153.1 mouse_genomes_project 9 35405480 35405595 - Gm25273 snoRNA snoRNA MGP_C3HHeJ_T0018337.1 MGP_C3HHeJ_G0015512.1 mouse_genomes_project 9 96111736 96113030 - Gm16127 processed_transcript processed_transcript MGP_C3HHeJ_T0091938.1 MGP_C3HHeJ_G0034493.1 mouse_genomes_project 9 52357843 52385354 + MGP_C3HHeJ_P0091938 4930550C14Rik protein_coding protein_coding MGP_C3HHeJ_T0094936.1 MGP_C3HHeJ_G0035162.1 mouse_genomes_project 9 125445141 125505382 + MGP_C3HHeJ_P0094936 Sacm1l protein_coding protein_coding MGP_C3HHeJ_T0092423.1 MGP_C3HHeJ_G0034633.1 mouse_genomes_project 9 64663157 64708478 + MGP_C3HHeJ_P0092423 Igdcc3 protein_coding protein_coding MGP_C3HHeJ_T0092424.1 MGP_C3HHeJ_G0034633.1 mouse_genomes_project 9 64663394 64707955 + MGP_C3HHeJ_P0092424 Igdcc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010944.1 MGP_C3HHeJ_G0009077.1 mouse_genomes_project 9 1343336 1343420 - Gm23811 miRNA miRNA MGP_C3HHeJ_T0091254.1 MGP_C3HHeJ_G0034215.1 mouse_genomes_project 9 33279857 33287962 + MGP_C3HHeJ_P0091254 Rpusd4 protein_coding protein_coding MGP_C3HHeJ_T0091255.1 MGP_C3HHeJ_G0034215.1 mouse_genomes_project 9 33284336 33287207 + Rpusd4 protein_coding retained_intron MGP_C3HHeJ_T0091256.1 MGP_C3HHeJ_G0034215.1 mouse_genomes_project 9 33284692 33285807 + Rpusd4 protein_coding retained_intron MGP_C3HHeJ_T0091257.1 MGP_C3HHeJ_G0034215.1 mouse_genomes_project 9 33287193 33289705 + MGP_C3HHeJ_P0091257 Rpusd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011001.1 MGP_C3HHeJ_G0009134.1 mouse_genomes_project 9 105197895 105197970 + Mir2136 miRNA miRNA MGP_C3HHeJ_T0009237.1 MGP_C3HHeJ_G0007417.1 mouse_genomes_project 9 104674171 104715671 - Gm29154 lincRNA lincRNA MGP_C3HHeJ_T0009238.1 MGP_C3HHeJ_G0007417.1 mouse_genomes_project 9 104674274 104714955 - Gm29154 lincRNA lincRNA MGP_C3HHeJ_T0011653.1 MGP_C3HHeJ_G0009786.1 mouse_genomes_project 9 112546802 112547078 - Gm24860 misc_RNA misc_RNA MGP_C3HHeJ_T0094981.1 MGP_C3HHeJ_G0035177.1 mouse_genomes_project 9 126387746 126392945 - MGP_C3HHeJ_P0094981 Nlrp4g protein_coding protein_coding MGP_C3HHeJ_T0092534.1 MGP_C3HHeJ_G0034665.1 mouse_genomes_project 9 66585797 66590223 + MGP_C3HHeJ_P0092534 Rps27l protein_coding protein_coding MGP_C3HHeJ_T0092535.1 MGP_C3HHeJ_G0034665.1 mouse_genomes_project 9 66585802 66590225 + MGP_C3HHeJ_P0092535 Rps27l protein_coding protein_coding MGP_C3HHeJ_T0092536.1 MGP_C3HHeJ_G0034665.1 mouse_genomes_project 9 66585877 66590179 + MGP_C3HHeJ_P0092536 Rps27l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092537.1 MGP_C3HHeJ_G0034665.1 mouse_genomes_project 9 66586066 66590227 + Rps27l protein_coding processed_transcript MGP_C3HHeJ_T0092538.1 MGP_C3HHeJ_G0034665.1 mouse_genomes_project 9 66587353 66590179 + MGP_C3HHeJ_P0092538 Rps27l protein_coding protein_coding MGP_C3HHeJ_T0092539.1 MGP_C3HHeJ_G0034665.1 mouse_genomes_project 9 66589274 66590222 + Rps27l protein_coding retained_intron MGP_C3HHeJ_T0005365.1 MGP_C3HHeJ_G0004537.1 mouse_genomes_project 9 44542146 44543735 - Gm16536 antisense antisense MGP_C3HHeJ_T0094520.1 MGP_C3HHeJ_G0035039.1 mouse_genomes_project 9 112011237 112045055 + MGP_C3HHeJ_P0094520 Myl3 protein_coding protein_coding MGP_C3HHeJ_T0094521.1 MGP_C3HHeJ_G0035039.1 mouse_genomes_project 9 112038978 112045350 + MGP_C3HHeJ_P0094521 Myl3 protein_coding protein_coding MGP_C3HHeJ_T0094522.1 MGP_C3HHeJ_G0035039.1 mouse_genomes_project 9 112044336 112045699 + Myl3 protein_coding retained_intron MGP_C3HHeJ_T0092462.1 MGP_C3HHeJ_G0034649.1 mouse_genomes_project 9 65278717 65417651 - MGP_C3HHeJ_P0092462 Zfp609 protein_coding protein_coding MGP_C3HHeJ_T0092463.1 MGP_C3HHeJ_G0034649.1 mouse_genomes_project 9 65286192 65287458 - Zfp609 protein_coding processed_transcript MGP_C3HHeJ_T0092464.1 MGP_C3HHeJ_G0034649.1 mouse_genomes_project 9 65384263 65386761 - MGP_C3HHeJ_P0092464 Zfp609 protein_coding protein_coding MGP_C3HHeJ_T0009221.1 MGP_C3HHeJ_G0007402.1 mouse_genomes_project 9 96929281 96931636 - BC043934 lincRNA lincRNA MGP_C3HHeJ_T0009222.1 MGP_C3HHeJ_G0007402.1 mouse_genomes_project 9 96929282 96930932 - BC043934 lincRNA lincRNA MGP_C3HHeJ_T0098199.1 MGP_C3HHeJ_G0036411.1 mouse_genomes_project 9 9994815 9994936 + Gm25365 rRNA rRNA MGP_C3HHeJ_T0094064.1 MGP_C3HHeJ_G0034967.1 mouse_genomes_project 9 109000252 109002795 + MGP_C3HHeJ_P0094064 Amigo3 protein_coding protein_coding MGP_C3HHeJ_T0093191.1 MGP_C3HHeJ_G0034806.1 mouse_genomes_project 9 90517052 90589617 - MGP_C3HHeJ_P0093191 Tbc1d2b protein_coding protein_coding MGP_C3HHeJ_T0093192.1 MGP_C3HHeJ_G0034806.1 mouse_genomes_project 9 90546006 90589652 - MGP_C3HHeJ_P0093192 Tbc1d2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093193.1 MGP_C3HHeJ_G0034806.1 mouse_genomes_project 9 90556841 90589619 - MGP_C3HHeJ_P0093193 Tbc1d2b protein_coding protein_coding MGP_C3HHeJ_T0093194.1 MGP_C3HHeJ_G0034806.1 mouse_genomes_project 9 90559730 90574526 - Tbc1d2b protein_coding processed_transcript MGP_C3HHeJ_T0010955.1 MGP_C3HHeJ_G0009088.1 mouse_genomes_project 9 18544078 18544156 - Mir1900 miRNA miRNA MGP_C3HHeJ_T0091080.1 MGP_C3HHeJ_G0034166.1 mouse_genomes_project 9 19946688 20009417 - MGP_C3HHeJ_P0091080 Anln protein_coding protein_coding MGP_C3HHeJ_T0090676.1 MGP_C3HHeJ_G0034001.1 mouse_genomes_project 9 4220869 4240299 + MGP_C3HHeJ_P0090676 Dcun1d5 protein_coding protein_coding MGP_C3HHeJ_T0009266.1 MGP_C3HHeJ_G0007437.1 mouse_genomes_project 9 121668087 121670248 - Gm2449 lincRNA lincRNA MGP_C3HHeJ_T0101276.1 MGP_C3HHeJ_G0039382.1 mouse_genomes_project 9 38942460 38943108 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101277.1 MGP_C3HHeJ_G0039382.1 mouse_genomes_project 9 38942495 38943077 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0091540.1 MGP_C3HHeJ_G0034367.1 mouse_genomes_project 9 41867717 41892888 + MGP_C3HHeJ_P0091540 Trim29 protein_coding protein_coding MGP_C3HHeJ_T0090998.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963617 19048049 + MGP_C3HHeJ_P0090998 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0090999.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963641 19047433 + MGP_C3HHeJ_P0090999 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091000.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963654 19047435 + MGP_C3HHeJ_P0091000 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091001.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963677 19008671 + MGP_C3HHeJ_P0091001 Dnm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091002.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963680 19047421 + MGP_C3HHeJ_P0091002 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091003.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963685 19047419 + MGP_C3HHeJ_P0091003 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091004.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963690 19046753 + MGP_C3HHeJ_P0091004 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091005.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963788 19048049 + MGP_C3HHeJ_P0091005 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091006.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963805 19031425 + MGP_C3HHeJ_P0091006 Dnm2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0091007.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18963952 19032969 + Dnm2 protein_coding processed_transcript MGP_C3HHeJ_T0091008.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 18996324 18996788 + Dnm2 protein_coding processed_transcript MGP_C3HHeJ_T0091009.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 19018076 19040854 + MGP_C3HHeJ_P0091009 Dnm2 protein_coding protein_coding MGP_C3HHeJ_T0091010.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 19021901 19048054 + Dnm2 protein_coding retained_intron MGP_C3HHeJ_T0091011.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 19035485 19044917 + Dnm2 protein_coding retained_intron MGP_C3HHeJ_T0091012.1 MGP_C3HHeJ_G0034134.1 mouse_genomes_project 9 19045401 19046694 + Dnm2 protein_coding processed_transcript MGP_C3HHeJ_T0092819.1 MGP_C3HHeJ_G0034719.1 mouse_genomes_project 9 75220433 75224267 + MGP_C3HHeJ_P0092819 Bcl2l10 protein_coding protein_coding MGP_C3HHeJ_T0091457.1 MGP_C3HHeJ_G0034329.1 mouse_genomes_project 9 38202270 38203043 + MGP_C3HHeJ_P0091457 protein_coding protein_coding MGP_C3HHeJ_T0091788.1 MGP_C3HHeJ_G0034440.1 mouse_genomes_project 9 47098733 47124162 - MGP_C3HHeJ_P0091788 Nxpe2 protein_coding protein_coding MGP_C3HHeJ_T0091789.1 MGP_C3HHeJ_G0034440.1 mouse_genomes_project 9 47099871 47124098 - MGP_C3HHeJ_P0091789 Nxpe2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091790.1 MGP_C3HHeJ_G0034440.1 mouse_genomes_project 9 47108753 47136730 - MGP_C3HHeJ_P0091790 Nxpe2 protein_coding protein_coding MGP_C3HHeJ_T0091791.1 MGP_C3HHeJ_G0034440.1 mouse_genomes_project 9 47113505 47124118 - Nxpe2 protein_coding processed_transcript MGP_C3HHeJ_T0091792.1 MGP_C3HHeJ_G0034440.1 mouse_genomes_project 9 47113833 47136730 - Nxpe2 protein_coding processed_transcript MGP_C3HHeJ_T0009185.1 MGP_C3HHeJ_G0007375.1 mouse_genomes_project 9 74701858 74746457 + Gm20649 lincRNA lincRNA MGP_C3HHeJ_T0009171.1 MGP_C3HHeJ_G0007364.1 mouse_genomes_project 9 63512464 63517714 + 1110036E04Rik lincRNA lincRNA MGP_C3HHeJ_T0011638.1 MGP_C3HHeJ_G0009771.1 mouse_genomes_project 9 15908515 15908821 + Gm25295 misc_RNA misc_RNA MGP_C3HHeJ_T0018274.1 MGP_C3HHeJ_G0015491.1 mouse_genomes_project 9 12582243 12587016 + Gm16568 processed_transcript processed_transcript MGP_C3HHeJ_T0100973.1 MGP_C3HHeJ_G0039167.1 mouse_genomes_project 9 63653767 63653866 + Snord16a snoRNA snoRNA MGP_C3HHeJ_T0002319.1 MGP_C3HHeJ_G0002238.1 mouse_genomes_project 9 33373078 33374231 - TEC TEC MGP_C3HHeJ_T0002417.1 MGP_C3HHeJ_G0002335.1 mouse_genomes_project 9 108562098 108563842 - TEC TEC MGP_C3HHeJ_T0009133.1 MGP_C3HHeJ_G0007332.1 mouse_genomes_project 9 30786314 30806666 + Gm3331 lincRNA lincRNA MGP_C3HHeJ_T0093472.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103295678 103297703 - Cep63 protein_coding TEC MGP_C3HHeJ_T0093473.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103297674 103339796 - MGP_C3HHeJ_P0093473 Cep63 protein_coding protein_coding MGP_C3HHeJ_T0093474.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103297687 103340206 - MGP_C3HHeJ_P0093474 Cep63 protein_coding protein_coding MGP_C3HHeJ_T0093475.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103297783 103298266 - Cep63 protein_coding retained_intron MGP_C3HHeJ_T0093476.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103301500 103335462 - Cep63 protein_coding retained_intron MGP_C3HHeJ_T0093477.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103309328 103313859 - Cep63 protein_coding retained_intron MGP_C3HHeJ_T0093478.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103328810 103339695 - MGP_C3HHeJ_P0093478 Cep63 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093479.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103332317 103340181 - MGP_C3HHeJ_P0093479 Cep63 protein_coding protein_coding MGP_C3HHeJ_T0093480.1 MGP_C3HHeJ_G0034870.1 mouse_genomes_project 9 103332367 103340181 - MGP_C3HHeJ_P0093480 Cep63 protein_coding protein_coding MGP_C3HHeJ_T0000317.1 MGP_C3HHeJ_G0000267.1 mouse_genomes_project 9 125002291 125002362 + mt-Tn Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0094409.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308537 111325274 - MGP_C3HHeJ_P0094409 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094410.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308537 111342284 - MGP_C3HHeJ_P0094410 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094411.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308537 111342692 - MGP_C3HHeJ_P0094411 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094412.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308537 111342295 - MGP_C3HHeJ_P0094412 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094413.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308538 111335020 - Dhx30 protein_coding retained_intron MGP_C3HHeJ_T0094414.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308538 111309209 - MGP_C3HHeJ_P0094414 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094415.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308538 111342299 - MGP_C3HHeJ_P0094415 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094416.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308538 111339939 - MGP_C3HHeJ_P0094416 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094417.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308538 111309268 - MGP_C3HHeJ_P0094417 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094418.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308539 111342273 - MGP_C3HHeJ_P0094418 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094419.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308540 111342197 - MGP_C3HHeJ_P0094419 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094420.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111308735 111309733 - MGP_C3HHeJ_P0094420 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094421.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111310536 111311672 - Dhx30 protein_coding retained_intron MGP_C3HHeJ_T0094422.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111312160 111315679 - Dhx30 protein_coding retained_intron MGP_C3HHeJ_T0094423.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111314008 111335490 - Dhx30 protein_coding retained_intron MGP_C3HHeJ_T0094424.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111317167 111325226 - MGP_C3HHeJ_P0094424 Dhx30 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094425.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111317275 111341646 - MGP_C3HHeJ_P0094425 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094426.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111317317 111325225 - MGP_C3HHeJ_P0094426 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094427.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111322937 111340168 - MGP_C3HHeJ_P0094427 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094428.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111323025 111341949 - MGP_C3HHeJ_P0094428 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094429.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111334138 111342281 - MGP_C3HHeJ_P0094429 Dhx30 protein_coding protein_coding MGP_C3HHeJ_T0094430.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111337939 111342293 - Dhx30 protein_coding processed_transcript MGP_C3HHeJ_T0094431.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111339037 111342236 - Dhx30 protein_coding retained_intron MGP_C3HHeJ_T0094432.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111339975 111342494 - Dhx30 protein_coding processed_transcript MGP_C3HHeJ_T0094433.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111340283 111341970 - Dhx30 protein_coding processed_transcript MGP_C3HHeJ_T0094434.1 MGP_C3HHeJ_G0035025.1 mouse_genomes_project 9 111340352 111342247 - Dhx30 protein_coding processed_transcript MGP_C3HHeJ_T0091265.1 MGP_C3HHeJ_G0034218.1 mouse_genomes_project 9 33572425 33580965 + Pus3 protein_coding retained_intron MGP_C3HHeJ_T0091266.1 MGP_C3HHeJ_G0034218.1 mouse_genomes_project 9 33573290 33581228 + MGP_C3HHeJ_P0091266 Pus3 protein_coding protein_coding MGP_C3HHeJ_T0091267.1 MGP_C3HHeJ_G0034218.1 mouse_genomes_project 9 33573296 33580666 + MGP_C3HHeJ_P0091267 Pus3 protein_coding protein_coding MGP_C3HHeJ_T0091707.1 MGP_C3HHeJ_G0034420.1 mouse_genomes_project 9 44035846 44062161 + MGP_C3HHeJ_P0091707 Fxyd6 protein_coding protein_coding MGP_C3HHeJ_T0015845.1 MGP_C3HHeJ_G0013949.1 mouse_genomes_project 9 59133076 59133353 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100944.1 MGP_C3HHeJ_G0039138.1 mouse_genomes_project 9 12567190 12567323 + Gm22620 snoRNA snoRNA MGP_C3HHeJ_T0092900.1 MGP_C3HHeJ_G0034742.1 mouse_genomes_project 9 78285684 78374341 + MGP_C3HHeJ_P0092900 protein_coding protein_coding MGP_C3HHeJ_T0099703.1 MGP_C3HHeJ_G0037897.1 mouse_genomes_project 9 66623102 66623200 - Gm24225 snRNA snRNA MGP_C3HHeJ_T0099702.1 MGP_C3HHeJ_G0037896.1 mouse_genomes_project 9 65972687 65972789 - Gm23428 snRNA snRNA MGP_C3HHeJ_T0092213.1 MGP_C3HHeJ_G0034577.1 mouse_genomes_project 9 57865876 57872368 - Rec114 protein_coding processed_transcript MGP_C3HHeJ_T0092214.1 MGP_C3HHeJ_G0034577.1 mouse_genomes_project 9 57865882 57961411 - MGP_C3HHeJ_P0092214 Rec114 protein_coding protein_coding MGP_C3HHeJ_T0092215.1 MGP_C3HHeJ_G0034577.1 mouse_genomes_project 9 57865904 57877346 - Rec114 protein_coding processed_transcript MGP_C3HHeJ_T0092216.1 MGP_C3HHeJ_G0034577.1 mouse_genomes_project 9 57865907 57873444 - MGP_C3HHeJ_P0092216 Rec114 protein_coding protein_coding MGP_C3HHeJ_T0092217.1 MGP_C3HHeJ_G0034577.1 mouse_genomes_project 9 57878939 57963817 - MGP_C3HHeJ_P0092217 Rec114 protein_coding protein_coding MGP_C3HHeJ_T0093512.1 MGP_C3HHeJ_G0034877.1 mouse_genomes_project 9 103916149 103931455 - MGP_C3HHeJ_P0093512 Srprb protein_coding protein_coding MGP_C3HHeJ_T0093513.1 MGP_C3HHeJ_G0034877.1 mouse_genomes_project 9 103917207 103931447 - Srprb protein_coding retained_intron MGP_C3HHeJ_T0093515.1 MGP_C3HHeJ_G0034877.1 mouse_genomes_project 9 103918469 103920380 - Srprb protein_coding processed_transcript MGP_C3HHeJ_T0092756.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72838846 72872464 - MGP_C3HHeJ_P0092756 Pigb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092757.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72839908 72847085 - MGP_C3HHeJ_P0092757 Pigb protein_coding protein_coding MGP_C3HHeJ_T0092759.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72845138 72871785 - MGP_C3HHeJ_P0092759 Pigb protein_coding protein_coding MGP_C3HHeJ_T0092760.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72846091 72871737 - MGP_C3HHeJ_P0092760 Pigb protein_coding protein_coding MGP_C3HHeJ_T0092762.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72847123 72871785 - MGP_C3HHeJ_P0092762 Pigb protein_coding protein_coding MGP_C3HHeJ_T0092763.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72849038 72850632 - Pigb protein_coding retained_intron MGP_C3HHeJ_T0092764.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72853772 72868088 - MGP_C3HHeJ_P0092764 Pigb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092765.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72860481 72863526 - Pigb protein_coding retained_intron MGP_C3HHeJ_T0092766.1 MGP_C3HHeJ_G0034706.1 mouse_genomes_project 9 72864279 72866067 - Pigb protein_coding retained_intron MGP_C3HHeJ_T0010949.1 MGP_C3HHeJ_G0009082.1 mouse_genomes_project 9 10768695 10768793 + Gm22643 miRNA miRNA MGP_C3HHeJ_T0009134.1 MGP_C3HHeJ_G0007333.1 mouse_genomes_project 9 30862550 30886599 - Gm27162 lincRNA lincRNA MGP_C3HHeJ_T0009209.1 MGP_C3HHeJ_G0007394.1 mouse_genomes_project 9 91150215 91154867 - Gm28703 lincRNA lincRNA MGP_C3HHeJ_T0092626.1 MGP_C3HHeJ_G0034684.1 mouse_genomes_project 9 70365963 70429661 - MGP_C3HHeJ_P0092626 Fam63b protein_coding protein_coding MGP_C3HHeJ_T0092929.1 MGP_C3HHeJ_G0034754.1 mouse_genomes_project 9 78710919 78815165 + MGP_C3HHeJ_P0092929 Cd109 protein_coding protein_coding MGP_C3HHeJ_T0092930.1 MGP_C3HHeJ_G0034754.1 mouse_genomes_project 9 78711136 78713467 + Cd109 protein_coding processed_transcript MGP_C3HHeJ_T0092931.1 MGP_C3HHeJ_G0034754.1 mouse_genomes_project 9 78711255 78813970 + MGP_C3HHeJ_P0092931 Cd109 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002343.1 MGP_C3HHeJ_G0002262.1 mouse_genomes_project 9 72721122 72722561 + TEC TEC MGP_C3HHeJ_T0002388.1 MGP_C3HHeJ_G0002306.1 mouse_genomes_project 9 99893036 99893727 + TEC TEC MGP_C3HHeJ_T0091363.1 MGP_C3HHeJ_G0034252.1 mouse_genomes_project 9 35841741 35852163 - MGP_C3HHeJ_P0091363 Spa17 protein_coding protein_coding MGP_C3HHeJ_T0005462.1 MGP_C3HHeJ_G0004601.1 mouse_genomes_project 9 108475846 108479025 - Gm34106 antisense antisense MGP_C3HHeJ_T0100980.1 MGP_C3HHeJ_G0039174.1 mouse_genomes_project 9 68174334 68174407 + Gm22962 snoRNA snoRNA MGP_C3HHeJ_T0009149.1 MGP_C3HHeJ_G0007347.1 mouse_genomes_project 9 43093471 43095915 + C030014I23Rik lincRNA lincRNA MGP_C3HHeJ_T0009150.1 MGP_C3HHeJ_G0007347.1 mouse_genomes_project 9 43094325 43098365 + C030014I23Rik lincRNA lincRNA MGP_C3HHeJ_T0009162.1 MGP_C3HHeJ_G0007357.1 mouse_genomes_project 9 57159549 57168864 + Gm17322 lincRNA lincRNA MGP_C3HHeJ_T0091055.1 MGP_C3HHeJ_G0034153.1 mouse_genomes_project 9 19560332 19575532 - MGP_C3HHeJ_P0091055 Ccdc151 protein_coding protein_coding MGP_C3HHeJ_T0091056.1 MGP_C3HHeJ_G0034153.1 mouse_genomes_project 9 19560332 19575532 - MGP_C3HHeJ_P0091056 Ccdc151 protein_coding protein_coding MGP_C3HHeJ_T0092833.1 MGP_C3HHeJ_G0034725.1 mouse_genomes_project 9 75516746 75528815 + MGP_C3HHeJ_P0092833 Lysmd2 protein_coding protein_coding MGP_C3HHeJ_T0092938.1 MGP_C3HHeJ_G0034756.1 mouse_genomes_project 9 79877189 79881842 - MGP_C3HHeJ_P0092938 Cox7a2 protein_coding protein_coding MGP_C3HHeJ_T0092131.1 MGP_C3HHeJ_G0034560.1 mouse_genomes_project 9 56850825 56897401 + MGP_C3HHeJ_P0092131 Edc3 protein_coding protein_coding MGP_C3HHeJ_T0092132.1 MGP_C3HHeJ_G0034560.1 mouse_genomes_project 9 56850840 56896305 + MGP_C3HHeJ_P0092132 Edc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092133.1 MGP_C3HHeJ_G0034560.1 mouse_genomes_project 9 56850852 56858763 + MGP_C3HHeJ_P0092133 Edc3 protein_coding protein_coding MGP_C3HHeJ_T0091082.1 MGP_C3HHeJ_G0034168.1 mouse_genomes_project 9 20068721 20088767 - MGP_C3HHeJ_P0091082 Rp9 protein_coding protein_coding MGP_C3HHeJ_T0094362.1 MGP_C3HHeJ_G0035016.1 mouse_genomes_project 9 110538433 110540592 - protein_coding retained_intron MGP_C3HHeJ_T0094363.1 MGP_C3HHeJ_G0035016.1 mouse_genomes_project 9 110540349 110611328 - MGP_C3HHeJ_P0094363 protein_coding protein_coding MGP_C3HHeJ_T0092746.1 MGP_C3HHeJ_G0034704.1 mouse_genomes_project 9 72808011 72813543 - MGP_C3HHeJ_P0092746 Ccpg1os protein_coding protein_coding MGP_C3HHeJ_T0092747.1 MGP_C3HHeJ_G0034704.1 mouse_genomes_project 9 72811761 72813549 - Ccpg1os protein_coding retained_intron MGP_C3HHeJ_T0015939.1 MGP_C3HHeJ_G0014043.1 mouse_genomes_project 9 104935812 104936425 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098201.1 MGP_C3HHeJ_G0036413.1 mouse_genomes_project 9 33515561 33515669 - Gm24188 rRNA rRNA MGP_C3HHeJ_T0015896.1 MGP_C3HHeJ_G0014000.1 mouse_genomes_project 9 88392718 88393304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097950.1 MGP_C3HHeJ_G0036162.1 mouse_genomes_project 9 111258777 111261956 + pseudogene pseudogene MGP_C3HHeJ_T0091449.1 MGP_C3HHeJ_G0034321.1 mouse_genomes_project 9 37982597 37983614 + MGP_C3HHeJ_P0091449 Olfr148 protein_coding protein_coding MGP_C3HHeJ_T0015948.1 MGP_C3HHeJ_G0014052.1 mouse_genomes_project 9 110619361 110623054 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002409.1 MGP_C3HHeJ_G0002327.1 mouse_genomes_project 9 104346816 104348404 - TEC TEC MGP_C3HHeJ_T0005341.1 MGP_C3HHeJ_G0004520.1 mouse_genomes_project 9 11911396 11925813 + Gm10706 antisense antisense MGP_C3HHeJ_T0099679.1 MGP_C3HHeJ_G0037873.1 mouse_genomes_project 9 17970432 17970546 + Gm23316 snRNA snRNA MGP_C3HHeJ_T0015821.1 MGP_C3HHeJ_G0013925.1 mouse_genomes_project 9 20312023 20312491 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015889.1 MGP_C3HHeJ_G0013993.1 mouse_genomes_project 9 85303572 85304017 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011007.1 MGP_C3HHeJ_G0009140.1 mouse_genomes_project 9 109051910 109052028 - miRNA miRNA MGP_C3HHeJ_T0010954.1 MGP_C3HHeJ_G0009087.1 mouse_genomes_project 9 18419262 18419337 - Mir7081 miRNA miRNA MGP_C3HHeJ_T0090697.1 MGP_C3HHeJ_G0034012.1 mouse_genomes_project 9 4840800 4860325 - MGP_C3HHeJ_P0090697 Birc2 protein_coding protein_coding MGP_C3HHeJ_T0090698.1 MGP_C3HHeJ_G0034012.1 mouse_genomes_project 9 4840809 4858645 - MGP_C3HHeJ_P0090698 Birc2 protein_coding protein_coding MGP_C3HHeJ_T0090699.1 MGP_C3HHeJ_G0034012.1 mouse_genomes_project 9 4858173 4860073 - Birc2 protein_coding processed_transcript MGP_C3HHeJ_T0090700.1 MGP_C3HHeJ_G0034012.1 mouse_genomes_project 9 4859137 4860331 - Birc2 protein_coding retained_intron MGP_C3HHeJ_T0090701.1 MGP_C3HHeJ_G0034012.1 mouse_genomes_project 9 4859954 4860332 - MGP_C3HHeJ_P0090701 Birc2 protein_coding protein_coding MGP_C3HHeJ_T0093661.1 MGP_C3HHeJ_G0034902.1 mouse_genomes_project 9 106868809 106877621 - Col6a4 protein_coding processed_transcript MGP_C3HHeJ_T0093662.1 MGP_C3HHeJ_G0034902.1 mouse_genomes_project 9 106869820 106983769 - MGP_C3HHeJ_P0093662 Col6a4 protein_coding protein_coding MGP_C3HHeJ_T0093663.1 MGP_C3HHeJ_G0034902.1 mouse_genomes_project 9 106955819 106957169 - Col6a4 protein_coding processed_transcript MGP_C3HHeJ_T0092585.1 MGP_C3HHeJ_G0034674.1 mouse_genomes_project 9 69157474 69196133 + MGP_C3HHeJ_P0092585 Anxa2 protein_coding protein_coding MGP_C3HHeJ_T0092586.1 MGP_C3HHeJ_G0034674.1 mouse_genomes_project 9 69157570 69189595 + MGP_C3HHeJ_P0092586 Anxa2 protein_coding protein_coding MGP_C3HHeJ_T0092587.1 MGP_C3HHeJ_G0034674.1 mouse_genomes_project 9 69157920 69188197 + MGP_C3HHeJ_P0092587 Anxa2 protein_coding protein_coding MGP_C3HHeJ_T0092588.1 MGP_C3HHeJ_G0034674.1 mouse_genomes_project 9 69182807 69196133 + Anxa2 protein_coding retained_intron MGP_C3HHeJ_T0092589.1 MGP_C3HHeJ_G0034674.1 mouse_genomes_project 9 69184453 69195851 + MGP_C3HHeJ_P0092589 Anxa2 protein_coding protein_coding MGP_C3HHeJ_T0092590.1 MGP_C3HHeJ_G0034674.1 mouse_genomes_project 9 69191120 69192446 + Anxa2 protein_coding retained_intron MGP_C3HHeJ_T0094935.1 MGP_C3HHeJ_G0035161.1 mouse_genomes_project 9 125393110 125436862 + MGP_C3HHeJ_P0094935 Limd1 protein_coding protein_coding MGP_C3HHeJ_T0010951.1 MGP_C3HHeJ_G0009084.1 mouse_genomes_project 9 12566843 12566910 + miRNA miRNA MGP_C3HHeJ_T0091599.1 MGP_C3HHeJ_G0034382.1 mouse_genomes_project 9 42900055 42913548 - MGP_C3HHeJ_P0091599 Hinfp protein_coding protein_coding MGP_C3HHeJ_T0009182.1 MGP_C3HHeJ_G0007372.1 mouse_genomes_project 9 72596432 72599648 - Gm27204 lincRNA lincRNA MGP_C3HHeJ_T0093566.1 MGP_C3HHeJ_G0034889.1 mouse_genomes_project 9 104845932 104865361 - Ackr4 protein_coding processed_transcript MGP_C3HHeJ_T0093569.1 MGP_C3HHeJ_G0034889.1 mouse_genomes_project 9 104860922 104890453 - MGP_C3HHeJ_P0093569 Ackr4 protein_coding protein_coding MGP_C3HHeJ_T0093570.1 MGP_C3HHeJ_G0034889.1 mouse_genomes_project 9 104861053 104865820 - MGP_C3HHeJ_P0093570 Ackr4 protein_coding protein_coding MGP_C3HHeJ_T0091045.1 MGP_C3HHeJ_G0034147.1 mouse_genomes_project 9 19485008 19492652 - MGP_C3HHeJ_P0091045 Tmem205 protein_coding protein_coding MGP_C3HHeJ_T0091046.1 MGP_C3HHeJ_G0034147.1 mouse_genomes_project 9 19485008 19492652 - MGP_C3HHeJ_P0091046 Tmem205 protein_coding protein_coding MGP_C3HHeJ_T0093541.1 MGP_C3HHeJ_G0034882.1 mouse_genomes_project 9 104087949 104097142 - MGP_C3HHeJ_P0093541 Cdv3 protein_coding protein_coding MGP_C3HHeJ_T0093542.1 MGP_C3HHeJ_G0034882.1 mouse_genomes_project 9 104088055 104097383 - MGP_C3HHeJ_P0093542 Cdv3 protein_coding protein_coding MGP_C3HHeJ_T0093543.1 MGP_C3HHeJ_G0034882.1 mouse_genomes_project 9 104093618 104096995 - Cdv3 protein_coding retained_intron MGP_C3HHeJ_T0010950.1 MGP_C3HHeJ_G0009083.1 mouse_genomes_project 9 12564612 12564671 + Mir7650 miRNA miRNA MGP_C3HHeJ_T0092146.1 MGP_C3HHeJ_G0034564.1 mouse_genomes_project 9 57094100 57116919 + MGP_C3HHeJ_P0092146 Sema7a protein_coding protein_coding MGP_C3HHeJ_T0092600.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738497 69748834 + MGP_C3HHeJ_P0092600 Gtf2a2 protein_coding protein_coding MGP_C3HHeJ_T0092601.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738501 69748706 + Gtf2a2 protein_coding retained_intron MGP_C3HHeJ_T0092602.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738512 69748705 + MGP_C3HHeJ_P0092602 Gtf2a2 protein_coding protein_coding MGP_C3HHeJ_T0092603.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738513 69748706 + MGP_C3HHeJ_P0092603 Gtf2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092604.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738515 69748483 + Gtf2a2 protein_coding processed_transcript MGP_C3HHeJ_T0092605.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738518 69744183 + Gtf2a2 protein_coding retained_intron MGP_C3HHeJ_T0092606.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738518 69748705 + MGP_C3HHeJ_P0092606 Gtf2a2 protein_coding protein_coding MGP_C3HHeJ_T0092607.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738521 69745436 + MGP_C3HHeJ_P0092607 Gtf2a2 protein_coding protein_coding MGP_C3HHeJ_T0092608.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738526 69745431 + Gtf2a2 protein_coding retained_intron MGP_C3HHeJ_T0092609.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738531 69741586 + Gtf2a2 protein_coding retained_intron MGP_C3HHeJ_T0092610.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738542 69745448 + MGP_C3HHeJ_P0092610 Gtf2a2 protein_coding protein_coding MGP_C3HHeJ_T0092611.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69738590 69748706 + MGP_C3HHeJ_P0092611 Gtf2a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0092612.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69741759 69748705 + Gtf2a2 protein_coding processed_transcript MGP_C3HHeJ_T0092613.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69742766 69745872 + Gtf2a2 protein_coding retained_intron MGP_C3HHeJ_T0092614.1 MGP_C3HHeJ_G0034677.1 mouse_genomes_project 9 69745009 69748705 + Gtf2a2 protein_coding retained_intron MGP_C3HHeJ_T0002326.1 MGP_C3HHeJ_G0002245.1 mouse_genomes_project 9 71691651 71694398 - TEC TEC MGP_C3HHeJ_T0015872.1 MGP_C3HHeJ_G0013976.1 mouse_genomes_project 9 76971459 76971664 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092396.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 63883686 64203406 + MGP_C3HHeJ_P0092396 Megf11 protein_coding protein_coding MGP_C3HHeJ_T0092397.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 63883686 64211636 + MGP_C3HHeJ_P0092397 Megf11 protein_coding protein_coding MGP_C3HHeJ_T0092398.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 63883686 64209721 + MGP_C3HHeJ_P0092398 Megf11 protein_coding protein_coding MGP_C3HHeJ_T0092399.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 63883743 64149771 + Megf11 protein_coding retained_intron MGP_C3HHeJ_T0092400.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 63883746 64211636 + MGP_C3HHeJ_P0092400 Megf11 protein_coding protein_coding MGP_C3HHeJ_T0092401.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 64000481 64008221 + Megf11 protein_coding processed_transcript MGP_C3HHeJ_T0092402.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 64000746 64190184 + Megf11 protein_coding retained_intron MGP_C3HHeJ_T0092403.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 64046696 64138448 + Megf11 protein_coding processed_transcript MGP_C3HHeJ_T0092404.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 64161095 64194836 + MGP_C3HHeJ_P0092404 Megf11 protein_coding protein_coding MGP_C3HHeJ_T0092405.1 MGP_C3HHeJ_G0034625.1 mouse_genomes_project 9 64196211 64208364 + Megf11 protein_coding processed_transcript MGP_C3HHeJ_T0015824.1 MGP_C3HHeJ_G0013928.1 mouse_genomes_project 9 30595398 30595816 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002358.1 MGP_C3HHeJ_G0002277.1 mouse_genomes_project 9 85980275 85981627 + TEC TEC MGP_C3HHeJ_T0011009.1 MGP_C3HHeJ_G0009142.1 mouse_genomes_project 9 109554993 109555067 + Mir191 miRNA miRNA MGP_C3HHeJ_T0094187.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484070 109502038 + MGP_C3HHeJ_P0094187 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094188.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484351 109496843 + MGP_C3HHeJ_P0094188 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094189.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484367 109517412 + MGP_C3HHeJ_P0094189 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094190.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484374 109535218 + MGP_C3HHeJ_P0094190 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094191.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484378 109535389 + MGP_C3HHeJ_P0094191 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094192.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484416 109496829 + MGP_C3HHeJ_P0094192 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094193.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484419 109496869 + MGP_C3HHeJ_P0094193 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094194.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484420 109517181 + MGP_C3HHeJ_P0094194 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094195.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484677 109498597 + Qrich1 protein_coding retained_intron MGP_C3HHeJ_T0094196.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109484701 109496865 + MGP_C3HHeJ_P0094196 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094197.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109496381 109501788 + MGP_C3HHeJ_P0094197 Qrich1 protein_coding protein_coding MGP_C3HHeJ_T0094198.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109528297 109534794 + Qrich1 protein_coding retained_intron MGP_C3HHeJ_T0094199.1 MGP_C3HHeJ_G0034986.1 mouse_genomes_project 9 109528635 109534625 + Qrich1 protein_coding retained_intron MGP_C3HHeJ_T0005406.1 MGP_C3HHeJ_G0004563.1 mouse_genomes_project 9 76244274 76245544 + Gm27234 antisense antisense MGP_C3HHeJ_T0009228.1 MGP_C3HHeJ_G0007408.1 mouse_genomes_project 9 99939105 99940554 + Gm28087 lincRNA lincRNA MGP_C3HHeJ_T0093884.1 MGP_C3HHeJ_G0034945.1 mouse_genomes_project 9 108509126 108515127 + MGP_C3HHeJ_P0093884 Hyal3 protein_coding protein_coding MGP_C3HHeJ_T0093885.1 MGP_C3HHeJ_G0034945.1 mouse_genomes_project 9 108509601 108515564 + MGP_C3HHeJ_P0093885 Hyal3 protein_coding protein_coding MGP_C3HHeJ_T0093886.1 MGP_C3HHeJ_G0034945.1 mouse_genomes_project 9 108513038 108514956 + MGP_C3HHeJ_P0093886 Hyal3 protein_coding protein_coding MGP_C3HHeJ_T0093374.1 MGP_C3HHeJ_G0034849.1 mouse_genomes_project 9 99603586 99713810 - MGP_C3HHeJ_P0093374 Pik3cb protein_coding protein_coding MGP_C3HHeJ_T0093375.1 MGP_C3HHeJ_G0034849.1 mouse_genomes_project 9 99605333 99713648 - MGP_C3HHeJ_P0093375 Pik3cb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0093376.1 MGP_C3HHeJ_G0034849.1 mouse_genomes_project 9 99671048 99714344 - MGP_C3HHeJ_P0093376 Pik3cb protein_coding protein_coding MGP_C3HHeJ_T0002421.1 MGP_C3HHeJ_G0002339.1 mouse_genomes_project 9 109142085 109142903 - TEC TEC MGP_C3HHeJ_T0015880.1 MGP_C3HHeJ_G0013984.1 mouse_genomes_project 9 81064125 81065837 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0091624.1 MGP_C3HHeJ_G0034398.1 mouse_genomes_project 9 43303828 43316948 + MGP_C3HHeJ_P0091624 Treh protein_coding protein_coding MGP_C3HHeJ_T0091625.1 MGP_C3HHeJ_G0034398.1 mouse_genomes_project 9 43303830 43316947 + MGP_C3HHeJ_P0091625 Treh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0091626.1 MGP_C3HHeJ_G0034398.1 mouse_genomes_project 9 43303844 43316948 + MGP_C3HHeJ_P0091626 Treh protein_coding protein_coding MGP_C3HHeJ_T0091627.1 MGP_C3HHeJ_G0034398.1 mouse_genomes_project 9 43313938 43316659 + MGP_C3HHeJ_P0091627 Treh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009208.1 MGP_C3HHeJ_G0007393.1 mouse_genomes_project 9 90400438 90402146 + Gm26882 lincRNA lincRNA MGP_C3HHeJ_T0015879.1 MGP_C3HHeJ_G0013983.1 mouse_genomes_project 9 80207481 80207809 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0015886.1 MGP_C3HHeJ_G0013990.1 mouse_genomes_project 9 83676961 83677367 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0092932.1 MGP_C3HHeJ_G0034755.1 mouse_genomes_project 9 79713335 79837352 - MGP_C3HHeJ_P0092932 Col12a1 protein_coding protein_coding MGP_C3HHeJ_T0092933.1 MGP_C3HHeJ_G0034755.1 mouse_genomes_project 9 79713335 79729357 - MGP_C3HHeJ_P0092933 Col12a1 protein_coding protein_coding MGP_C3HHeJ_T0092934.1 MGP_C3HHeJ_G0034755.1 mouse_genomes_project 9 79716101 79837554 - MGP_C3HHeJ_P0092934 Col12a1 protein_coding protein_coding MGP_C3HHeJ_T0092935.1 MGP_C3HHeJ_G0034755.1 mouse_genomes_project 9 79809665 79837554 - Col12a1 protein_coding retained_intron MGP_C3HHeJ_T0092936.1 MGP_C3HHeJ_G0034755.1 mouse_genomes_project 9 79831377 79837665 - Col12a1 protein_coding retained_intron MGP_C3HHeJ_T0092937.1 MGP_C3HHeJ_G0034755.1 mouse_genomes_project 9 79833749 79837328 - Col12a1 protein_coding retained_intron MGP_C3HHeJ_T0018327.1 MGP_C3HHeJ_G0015508.1 mouse_genomes_project 9 80032781 80033213 + Gm3211 processed_transcript processed_transcript MGP_C3HHeJ_T0093668.1 MGP_C3HHeJ_G0034904.1 mouse_genomes_project 9 107063698 107083929 + MGP_C3HHeJ_P0093668 Wdr82 protein_coding protein_coding MGP_C3HHeJ_T0093669.1 MGP_C3HHeJ_G0034904.1 mouse_genomes_project 9 107063699 107066924 + Wdr82 protein_coding retained_intron MGP_C3HHeJ_T0093670.1 MGP_C3HHeJ_G0034904.1 mouse_genomes_project 9 107069587 107079310 + MGP_C3HHeJ_P0093670 Wdr82 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010953.1 MGP_C3HHeJ_G0009086.1 mouse_genomes_project 9 17509329 17509396 + Gm26231 miRNA miRNA MGP_C3HHeJ_T0092071.1 MGP_C3HHeJ_G0034537.1 mouse_genomes_project 9 55990380 56001583 - MGP_C3HHeJ_P0092071 Snx33 protein_coding protein_coding MGP_C3HHeJ_T0094878.1 MGP_C3HHeJ_G0035141.1 mouse_genomes_project 9 123852012 123866366 - MGP_C3HHeJ_P0094878 Pomgnt2 protein_coding protein_coding MGP_C3HHeJ_T0091155.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26817531 27810859 - MGP_C3HHeJ_P0091155 Ntm protein_coding protein_coding MGP_C3HHeJ_T0091156.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26818788 27243988 - MGP_C3HHeJ_P0091156 Ntm protein_coding protein_coding MGP_C3HHeJ_T0091157.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26819007 26839491 - MGP_C3HHeJ_P0091157 Ntm protein_coding protein_coding MGP_C3HHeJ_T0091158.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26819270 26839491 - MGP_C3HHeJ_P0091158 Ntm protein_coding protein_coding MGP_C3HHeJ_T0091159.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26834333 27243520 - MGP_C3HHeJ_P0091159 Ntm protein_coding protein_coding MGP_C3HHeJ_T0091160.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26834459 27011802 - Ntm protein_coding processed_transcript MGP_C3HHeJ_T0091161.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26834482 26934770 - Ntm protein_coding processed_transcript MGP_C3HHeJ_T0091162.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 26838469 27810860 - Ntm protein_coding retained_intron MGP_C3HHeJ_T0091163.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 27002597 27810860 - Ntm protein_coding retained_intron MGP_C3HHeJ_T0091164.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 27243371 27810849 - Ntm protein_coding processed_transcript MGP_C3HHeJ_T0091165.1 MGP_C3HHeJ_G0034192.1 mouse_genomes_project 9 27789561 27810871 - Ntm protein_coding processed_transcript MGP_C3HHeJ_T0094890.1 MGP_C3HHeJ_G0035144.1 mouse_genomes_project 9 124234603 124264424 + MGP_C3HHeJ_P0094890 Abhd5 protein_coding protein_coding MGP_C3HHeJ_T0094891.1 MGP_C3HHeJ_G0035144.1 mouse_genomes_project 9 124234725 124264424 + MGP_C3HHeJ_P0094891 Abhd5 protein_coding protein_coding MGP_C3HHeJ_T0094892.1 MGP_C3HHeJ_G0035144.1 mouse_genomes_project 9 124234725 124262725 + MGP_C3HHeJ_P0094892 Abhd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094893.1 MGP_C3HHeJ_G0035144.1 mouse_genomes_project 9 124234727 124242276 + Abhd5 protein_coding processed_transcript MGP_C3HHeJ_T0094894.1 MGP_C3HHeJ_G0035144.1 mouse_genomes_project 9 124234727 124260832 + MGP_C3HHeJ_P0094894 Abhd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0094895.1 MGP_C3HHeJ_G0035144.1 mouse_genomes_project 9 124246558 124251167 + MGP_C3HHeJ_P0094895 Abhd5 protein_coding protein_coding MGP_C3HHeJ_T0009122.1 MGP_C3HHeJ_G0007321.1 mouse_genomes_project 9 12057177 12059400 + Gm16302 lincRNA lincRNA MGP_C3HHeJ_T0094876.1 MGP_C3HHeJ_G0035139.1 mouse_genomes_project 9 123807770 123816455 + MGP_C3HHeJ_P0094876 1700048O20Rik protein_coding protein_coding MGP_C3HHeJ_T0093198.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91712641 91729076 + MGP_C3HHeJ_P0093198 Zic4 protein_coding protein_coding MGP_C3HHeJ_T0093199.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91718365 91719131 + Zic4 protein_coding processed_transcript MGP_C3HHeJ_T0093200.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91718809 91729418 + MGP_C3HHeJ_P0093200 Zic4 protein_coding protein_coding MGP_C3HHeJ_T0093201.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91718891 91731143 + Zic4 protein_coding retained_intron MGP_C3HHeJ_T0093202.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91718967 91738560 + MGP_C3HHeJ_P0093202 Zic4 protein_coding protein_coding MGP_C3HHeJ_T0093203.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91719493 91729701 + Zic4 protein_coding retained_intron MGP_C3HHeJ_T0093204.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91720999 91729350 + MGP_C3HHeJ_P0093204 Zic4 protein_coding protein_coding MGP_C3HHeJ_T0093205.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91721208 91737725 + MGP_C3HHeJ_P0093205 Zic4 protein_coding protein_coding MGP_C3HHeJ_T0093206.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91721345 91723918 + Zic4 protein_coding retained_intron MGP_C3HHeJ_T0093207.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91728357 91735147 + Zic4 protein_coding retained_intron MGP_C3HHeJ_T0093208.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91728802 91740107 + MGP_C3HHeJ_P0093208 Zic4 protein_coding protein_coding MGP_C3HHeJ_T0093209.1 MGP_C3HHeJ_G0034808.1 mouse_genomes_project 9 91733158 91738811 + Zic4 protein_coding processed_transcript MGP_C3HHeJ_T0091542.1 MGP_C3HHeJ_G0034369.1 mouse_genomes_project 9 42411370 42413926 + MGP_C3HHeJ_P0091542 Gm3898 protein_coding protein_coding MGP_C3HHeJ_T0100987.1 MGP_C3HHeJ_G0039181.1 mouse_genomes_project 9 82423720 82423851 + Gm23748 snoRNA snoRNA MGP_C3HHeJ_T0002424.1 MGP_C3HHeJ_G0002342.1 mouse_genomes_project 9 109516305 109517451 + TEC TEC MGP_C3HHeJ_T0100968.1 MGP_C3HHeJ_G0039162.1 mouse_genomes_project 9 45286412 45286542 + Gm22659 snoRNA snoRNA MGP_C3HHeJ_T0099688.1 MGP_C3HHeJ_G0037882.1 mouse_genomes_project 9 44305547 44305654 - Gm22069 snRNA snRNA MGP_C3HHeJ_T0091439.1 MGP_C3HHeJ_G0034317.1 mouse_genomes_project 9 37878781 37879717 - MGP_C3HHeJ_P0091439 Olfr957 protein_coding protein_coding MGP_C3HHeJ_T0092112.1 MGP_C3HHeJ_G0034546.1 mouse_genomes_project 9 56360112 56374519 - MGP_C3HHeJ_P0092112 1700017B05Rik protein_coding protein_coding MGP_C3HHeJ_T0090645.1 MGP_C3HHeJ_G0033990.1 mouse_genomes_project 9 375090 750380 + MGP_C3HHeJ_P0090645 Gucy1a2 protein_coding protein_coding MGP_C3HHeJ_T0092197.1 MGP_C3HHeJ_G0034574.1 mouse_genomes_project 9 57689406 57700494 + MGP_C3HHeJ_P0092197 6030419C18Rik protein_coding protein_coding MGP_C3HHeJ_T0012387.1 MGP_C3HHeJ_G0010491.1 mouse_genomes_project 11 15563721 15564253 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031451.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031451 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031452.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031452 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031453.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031453 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031454.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031454 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031455.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031455 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031456.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031456 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031457.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031457 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031458.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031458 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031459.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605093 95674852 - MGP_C3HHeJ_P0031459 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031460.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605108 95674945 - MGP_C3HHeJ_P0031460 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031461.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95605337 95674852 - MGP_C3HHeJ_P0031461 Cacna1g protein_coding protein_coding MGP_C3HHeJ_T0031462.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95606554 95608391 - Cacna1g protein_coding processed_transcript MGP_C3HHeJ_T0031463.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95608192 95613899 - Cacna1g protein_coding processed_transcript MGP_C3HHeJ_T0031464.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95615531 95621024 - Cacna1g protein_coding processed_transcript MGP_C3HHeJ_T0031465.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95621891 95623121 - Cacna1g protein_coding processed_transcript MGP_C3HHeJ_T0031466.1 MGP_C3HHeJ_G0018711.1 mouse_genomes_project 11 95623622 95674393 - Cacna1g protein_coding processed_transcript MGP_C3HHeJ_T0012516.1 MGP_C3HHeJ_G0010620.1 mouse_genomes_project 11 60934433 60934847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011201.1 MGP_C3HHeJ_G0009334.1 mouse_genomes_project 11 14890856 14891180 + Gm23959 misc_RNA misc_RNA MGP_C3HHeJ_T0029897.1 MGP_C3HHeJ_G0018328.1 mouse_genomes_project 11 69875560 69879960 + MGP_C3HHeJ_P0029897 Gabarap protein_coding protein_coding MGP_C3HHeJ_T0029898.1 MGP_C3HHeJ_G0018328.1 mouse_genomes_project 11 69876056 69879949 + MGP_C3HHeJ_P0029898 Gabarap protein_coding protein_coding MGP_C3HHeJ_T0029899.1 MGP_C3HHeJ_G0018328.1 mouse_genomes_project 11 69876101 69879944 + Gabarap protein_coding retained_intron MGP_C3HHeJ_T0029900.1 MGP_C3HHeJ_G0018328.1 mouse_genomes_project 11 69876224 69877019 + Gabarap protein_coding processed_transcript MGP_C3HHeJ_T0030448.1 MGP_C3HHeJ_G0018468.1 mouse_genomes_project 11 75666342 75669417 + MGP_C3HHeJ_P0030448 Rilp protein_coding protein_coding MGP_C3HHeJ_T0030449.1 MGP_C3HHeJ_G0018468.1 mouse_genomes_project 11 75666715 75669412 + Rilp protein_coding retained_intron MGP_C3HHeJ_T0031226.1 MGP_C3HHeJ_G0018658.1 mouse_genomes_project 11 88159961 88344864 + MGP_C3HHeJ_P0031226 Tex14 protein_coding protein_coding MGP_C3HHeJ_T0031227.1 MGP_C3HHeJ_G0018658.1 mouse_genomes_project 11 88185013 88265149 + MGP_C3HHeJ_P0031227 Tex14 protein_coding protein_coding MGP_C3HHeJ_T0031228.1 MGP_C3HHeJ_G0018658.1 mouse_genomes_project 11 88191402 88344561 + MGP_C3HHeJ_P0031228 Tex14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031229.1 MGP_C3HHeJ_G0018658.1 mouse_genomes_project 11 88322156 88343998 + MGP_C3HHeJ_P0031229 Tex14 protein_coding protein_coding MGP_C3HHeJ_T0031230.1 MGP_C3HHeJ_G0018658.1 mouse_genomes_project 11 88324436 88344860 + MGP_C3HHeJ_P0031230 Tex14 protein_coding protein_coding MGP_C3HHeJ_T0031231.1 MGP_C3HHeJ_G0018658.1 mouse_genomes_project 11 88330136 88344707 + Tex14 protein_coding processed_transcript MGP_C3HHeJ_T0030954.1 MGP_C3HHeJ_G0018585.1 mouse_genomes_project 11 83310768 83381398 - MGP_C3HHeJ_P0030954 Rffl protein_coding protein_coding MGP_C3HHeJ_T0030955.1 MGP_C3HHeJ_G0018585.1 mouse_genomes_project 11 83312953 83354141 - MGP_C3HHeJ_P0030955 Rffl protein_coding protein_coding MGP_C3HHeJ_T0030956.1 MGP_C3HHeJ_G0018585.1 mouse_genomes_project 11 83314367 83335818 - MGP_C3HHeJ_P0030956 Rffl protein_coding protein_coding MGP_C3HHeJ_T0030957.1 MGP_C3HHeJ_G0018585.1 mouse_genomes_project 11 83319614 83354385 - MGP_C3HHeJ_P0030957 Rffl protein_coding protein_coding MGP_C3HHeJ_T0031150.1 MGP_C3HHeJ_G0018637.1 mouse_genomes_project 11 86543874 86553261 + MGP_C3HHeJ_P0031150 Tbx2 protein_coding protein_coding MGP_C3HHeJ_T0003088.1 MGP_C3HHeJ_G0002870.1 mouse_genomes_project 11 50124746 50126335 + Gm12569 antisense antisense MGP_C3HHeJ_T0003089.1 MGP_C3HHeJ_G0002870.1 mouse_genomes_project 11 50125406 50126190 + Gm12569 antisense antisense MGP_C3HHeJ_T0030931.1 MGP_C3HHeJ_G0018579.1 mouse_genomes_project 11 82605635 82607250 + MGP_C3HHeJ_P0030931 Ccl8 protein_coding protein_coding MGP_C3HHeJ_T0029277.1 MGP_C3HHeJ_G0018190.1 mouse_genomes_project 11 60858174 60894327 - MGP_C3HHeJ_P0029277 Slc47a1 protein_coding protein_coding MGP_C3HHeJ_T0029278.1 MGP_C3HHeJ_G0018190.1 mouse_genomes_project 11 60858175 60894310 - MGP_C3HHeJ_P0029278 Slc47a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029279.1 MGP_C3HHeJ_G0018190.1 mouse_genomes_project 11 60859075 60894293 - MGP_C3HHeJ_P0029279 Slc47a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0029280.1 MGP_C3HHeJ_G0018190.1 mouse_genomes_project 11 60878122 60881055 - Slc47a1 protein_coding processed_transcript MGP_C3HHeJ_T0029281.1 MGP_C3HHeJ_G0018190.1 mouse_genomes_project 11 60878299 60894591 - MGP_C3HHeJ_P0029281 Slc47a1 protein_coding protein_coding MGP_C3HHeJ_T0031741.1 MGP_C3HHeJ_G0018785.1 mouse_genomes_project 11 98769206 98807723 + MGP_C3HHeJ_P0031741 Socs7 protein_coding protein_coding MGP_C3HHeJ_T0031742.1 MGP_C3HHeJ_G0018785.1 mouse_genomes_project 11 98786914 98788145 + Socs7 protein_coding processed_transcript MGP_C3HHeJ_T0032090.1 MGP_C3HHeJ_G0018908.1 mouse_genomes_project 11 102158774 102168900 - MGP_C3HHeJ_P0032090 Klhl11 protein_coding protein_coding MGP_C3HHeJ_T0032899.1 MGP_C3HHeJ_G0019077.1 mouse_genomes_project 11 110515286 110567366 + MGP_C3HHeJ_P0032899 Apoh protein_coding protein_coding MGP_C3HHeJ_T0032900.1 MGP_C3HHeJ_G0019077.1 mouse_genomes_project 11 110555059 110567311 + MGP_C3HHeJ_P0032900 Apoh protein_coding protein_coding MGP_C3HHeJ_T0032901.1 MGP_C3HHeJ_G0019077.1 mouse_genomes_project 11 110555064 110575791 + MGP_C3HHeJ_P0032901 Apoh protein_coding protein_coding MGP_C3HHeJ_T0032902.1 MGP_C3HHeJ_G0019077.1 mouse_genomes_project 11 110566753 110582311 + MGP_C3HHeJ_P0032902 Apoh protein_coding protein_coding MGP_C3HHeJ_T0003126.1 MGP_C3HHeJ_G0002902.1 mouse_genomes_project 11 62122014 62123009 - Gm12279 antisense antisense MGP_C3HHeJ_T0012541.1 MGP_C3HHeJ_G0010645.1 mouse_genomes_project 11 71040383 71041036 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099985.1 MGP_C3HHeJ_G0038179.1 mouse_genomes_project 11 1977792 1977889 + Gm24958 snoRNA snoRNA MGP_C3HHeJ_T0006208.1 MGP_C3HHeJ_G0005178.1 mouse_genomes_project 11 80103779 80104570 + Gm11205 lincRNA lincRNA MGP_C3HHeJ_T0006283.1 MGP_C3HHeJ_G0005229.1 mouse_genomes_project 11 116667633 116689027 - Gm11690 lincRNA lincRNA MGP_C3HHeJ_T0098759.1 MGP_C3HHeJ_G0036953.1 mouse_genomes_project 11 17610298 17610401 - Gm26253 snRNA snRNA MGP_C3HHeJ_T0034015.1 MGP_C3HHeJ_G0019302.1 mouse_genomes_project 11 124733317 124739859 + Ptchd3 protein_coding retained_intron MGP_C3HHeJ_T0034016.1 MGP_C3HHeJ_G0019302.1 mouse_genomes_project 11 124733317 124746494 + MGP_C3HHeJ_P0034016 Ptchd3 protein_coding protein_coding MGP_C3HHeJ_T0030437.1 MGP_C3HHeJ_G0018465.1 mouse_genomes_project 11 75593131 75606596 - MGP_C3HHeJ_P0030437 Wdr81 protein_coding protein_coding MGP_C3HHeJ_T0030438.1 MGP_C3HHeJ_G0018465.1 mouse_genomes_project 11 75593135 75603240 - MGP_C3HHeJ_P0030438 Wdr81 protein_coding protein_coding MGP_C3HHeJ_T0030439.1 MGP_C3HHeJ_G0018465.1 mouse_genomes_project 11 75600352 75601966 - Wdr81 protein_coding processed_transcript MGP_C3HHeJ_T0012660.1 MGP_C3HHeJ_G0010764.1 mouse_genomes_project 11 122448542 122448987 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031075.1 MGP_C3HHeJ_G0018623.1 mouse_genomes_project 11 85068255 85171948 - MGP_C3HHeJ_P0031075 Aatf protein_coding protein_coding MGP_C3HHeJ_T0031076.1 MGP_C3HHeJ_G0018623.1 mouse_genomes_project 11 85068283 85148743 - Aatf protein_coding processed_transcript MGP_C3HHeJ_T0031077.1 MGP_C3HHeJ_G0018623.1 mouse_genomes_project 11 85088318 85095381 - Aatf protein_coding retained_intron MGP_C3HHeJ_T0031078.1 MGP_C3HHeJ_G0018623.1 mouse_genomes_project 11 85113500 85171948 - Aatf protein_coding retained_intron MGP_C3HHeJ_T0017031.1 MGP_C3HHeJ_G0014967.1 mouse_genomes_project 11 100188897 100189392 - Gm12356 processed_transcript processed_transcript MGP_C3HHeJ_T0006116.1 MGP_C3HHeJ_G0005101.1 mouse_genomes_project 11 21766225 21770920 - Gm12065 lincRNA lincRNA MGP_C3HHeJ_T0033370.1 MGP_C3HHeJ_G0019171.1 mouse_genomes_project 11 118905123 118908122 + MGP_C3HHeJ_P0033370 Galr2 protein_coding protein_coding MGP_C3HHeJ_T0033371.1 MGP_C3HHeJ_G0019171.1 mouse_genomes_project 11 118905670 118907845 + Galr2 protein_coding processed_transcript MGP_C3HHeJ_T0017023.1 MGP_C3HHeJ_G0014960.1 mouse_genomes_project 11 98396029 98401747 - Gm11532 processed_transcript processed_transcript MGP_C3HHeJ_T0012533.1 MGP_C3HHeJ_G0010637.1 mouse_genomes_project 11 69832159 69832651 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031635.1 MGP_C3HHeJ_G0018763.1 mouse_genomes_project 11 97692437 97695590 + Hoxb2 protein_coding retained_intron MGP_C3HHeJ_T0031636.1 MGP_C3HHeJ_G0018763.1 mouse_genomes_project 11 97693543 97695944 + MGP_C3HHeJ_P0031636 Hoxb2 protein_coding protein_coding MGP_C3HHeJ_T0003086.1 MGP_C3HHeJ_G0002868.1 mouse_genomes_project 11 49509829 49515292 - Gm12200 antisense antisense MGP_C3HHeJ_T0098789.1 MGP_C3HHeJ_G0036983.1 mouse_genomes_project 11 74844843 74844950 + Gm24211 snRNA snRNA MGP_C3HHeJ_T0027648.1 MGP_C3HHeJ_G0017754.1 mouse_genomes_project 11 2242520 2412358 - MGP_C3HHeJ_P0027648 Znrf3 protein_coding protein_coding MGP_C3HHeJ_T0027649.1 MGP_C3HHeJ_G0017754.1 mouse_genomes_project 11 2244792 2348399 - MGP_C3HHeJ_P0027649 Znrf3 protein_coding protein_coding MGP_C3HHeJ_T0027650.1 MGP_C3HHeJ_G0017754.1 mouse_genomes_project 11 2254987 2412358 - MGP_C3HHeJ_P0027650 Znrf3 protein_coding protein_coding MGP_C3HHeJ_T0033466.1 MGP_C3HHeJ_G0019190.1 mouse_genomes_project 11 119472599 119475178 + protein_coding retained_intron MGP_C3HHeJ_T0033467.1 MGP_C3HHeJ_G0019190.1 mouse_genomes_project 11 119472623 119475100 + protein_coding retained_intron MGP_C3HHeJ_T0033468.1 MGP_C3HHeJ_G0019190.1 mouse_genomes_project 11 119472713 119477411 + MGP_C3HHeJ_P0033468 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033469.1 MGP_C3HHeJ_G0019190.1 mouse_genomes_project 11 119472732 119478801 + MGP_C3HHeJ_P0033469 protein_coding unknown_likely_coding MGP_C3HHeJ_T0000808.1 MGP_C3HHeJ_G0000749.1 mouse_genomes_project 11 6850480 6850843 - TEC TEC MGP_C3HHeJ_T0033213.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194140 118199113 - Mif4gd protein_coding processed_transcript MGP_C3HHeJ_T0033214.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194140 118199153 - Mif4gd protein_coding processed_transcript MGP_C3HHeJ_T0033215.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194140 118199195 - MGP_C3HHeJ_P0033215 Mif4gd protein_coding protein_coding MGP_C3HHeJ_T0033216.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194140 118198717 - MGP_C3HHeJ_P0033216 Mif4gd protein_coding protein_coding MGP_C3HHeJ_T0033217.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194371 118199104 - MGP_C3HHeJ_P0033217 Mif4gd protein_coding protein_coding MGP_C3HHeJ_T0033218.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194429 118199056 - Mif4gd protein_coding processed_transcript MGP_C3HHeJ_T0033219.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194639 118199125 - Mif4gd protein_coding processed_transcript MGP_C3HHeJ_T0033220.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118194734 118198340 - MGP_C3HHeJ_P0033220 Mif4gd protein_coding protein_coding MGP_C3HHeJ_T0033221.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118195399 118199130 - Mif4gd protein_coding processed_transcript MGP_C3HHeJ_T0033222.1 MGP_C3HHeJ_G0019145.1 mouse_genomes_project 11 118198315 118199146 - Mif4gd protein_coding processed_transcript MGP_C3HHeJ_T0032950.1 MGP_C3HHeJ_G0019086.1 mouse_genomes_project 11 111693486 111710701 + Arsg protein_coding processed_transcript MGP_C3HHeJ_T0032951.1 MGP_C3HHeJ_G0019086.1 mouse_genomes_project 11 111693486 111797126 + MGP_C3HHeJ_P0032951 Arsg protein_coding protein_coding MGP_C3HHeJ_T0032952.1 MGP_C3HHeJ_G0019086.1 mouse_genomes_project 11 111705724 111710599 + Arsg protein_coding processed_transcript MGP_C3HHeJ_T0032953.1 MGP_C3HHeJ_G0019086.1 mouse_genomes_project 11 111706307 111797131 + MGP_C3HHeJ_P0032953 Arsg protein_coding protein_coding MGP_C3HHeJ_T0032954.1 MGP_C3HHeJ_G0019086.1 mouse_genomes_project 11 111766568 111797131 + MGP_C3HHeJ_P0032954 Arsg protein_coding protein_coding MGP_C3HHeJ_T0006120.1 MGP_C3HHeJ_G0005105.1 mouse_genomes_project 11 22309075 22323628 - Gm10466 lincRNA lincRNA MGP_C3HHeJ_T0003087.1 MGP_C3HHeJ_G0002869.1 mouse_genomes_project 11 49649093 49650344 - Gm12660 antisense antisense MGP_C3HHeJ_T0032006.1 MGP_C3HHeJ_G0018862.1 mouse_genomes_project 11 101197260 101198275 - MGP_C3HHeJ_P0032006 Krtap4-1 protein_coding protein_coding MGP_C3HHeJ_T0027797.1 MGP_C3HHeJ_G0017792.1 mouse_genomes_project 11 6125056 6148600 - MGP_C3HHeJ_P0027797 Sun3 protein_coding protein_coding MGP_C3HHeJ_T0027798.1 MGP_C3HHeJ_G0017792.1 mouse_genomes_project 11 6125056 6159846 - MGP_C3HHeJ_P0027798 Sun3 protein_coding protein_coding MGP_C3HHeJ_T0033621.1 MGP_C3HHeJ_G0019223.1 mouse_genomes_project 11 121844517 121853172 - MGP_C3HHeJ_P0033621 Cbx4 protein_coding protein_coding MGP_C3HHeJ_T0033622.1 MGP_C3HHeJ_G0019223.1 mouse_genomes_project 11 121848319 121853172 - Cbx4 protein_coding processed_transcript MGP_C3HHeJ_T0012661.1 MGP_C3HHeJ_G0010765.1 mouse_genomes_project 11 123645727 123649152 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028988.1 MGP_C3HHeJ_G0018100.1 mouse_genomes_project 11 57570593 57578166 + MGP_C3HHeJ_P0028988 Zfp692 protein_coding protein_coding MGP_C3HHeJ_T0028989.1 MGP_C3HHeJ_G0018100.1 mouse_genomes_project 11 57570696 57578180 + MGP_C3HHeJ_P0028989 Zfp692 protein_coding protein_coding MGP_C3HHeJ_T0028583.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48989004 49000596 - MGP_C3HHeJ_P0028583 Sqstm1 protein_coding protein_coding MGP_C3HHeJ_T0028584.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48989790 49000632 - MGP_C3HHeJ_P0028584 Sqstm1 protein_coding protein_coding MGP_C3HHeJ_T0028585.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48989805 48992593 - MGP_C3HHeJ_P0028585 Sqstm1 protein_coding protein_coding MGP_C3HHeJ_T0028586.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48990249 49000570 - MGP_C3HHeJ_P0028586 Sqstm1 protein_coding protein_coding MGP_C3HHeJ_T0028587.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48991950 48995905 - Sqstm1 protein_coding retained_intron MGP_C3HHeJ_T0028588.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48992081 48992757 - Sqstm1 protein_coding retained_intron MGP_C3HHeJ_T0028589.1 MGP_C3HHeJ_G0017994.1 mouse_genomes_project 11 48995483 48997124 - Sqstm1 protein_coding retained_intron MGP_C3HHeJ_T0012361.1 MGP_C3HHeJ_G0010465.1 mouse_genomes_project 11 3733788 3734774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031363.1 MGP_C3HHeJ_G0018693.1 mouse_genomes_project 11 91292396 91351044 - MGP_C3HHeJ_P0031363 Hlf protein_coding protein_coding MGP_C3HHeJ_T0031364.1 MGP_C3HHeJ_G0018693.1 mouse_genomes_project 11 91294849 91349835 - Hlf protein_coding processed_transcript MGP_C3HHeJ_T0031365.1 MGP_C3HHeJ_G0018693.1 mouse_genomes_project 11 91295001 91346813 - Hlf protein_coding processed_transcript MGP_C3HHeJ_T0031366.1 MGP_C3HHeJ_G0018693.1 mouse_genomes_project 11 91296687 91340590 - Hlf protein_coding processed_transcript MGP_C3HHeJ_T0031367.1 MGP_C3HHeJ_G0018693.1 mouse_genomes_project 11 91301412 91346576 - MGP_C3HHeJ_P0031367 Hlf protein_coding protein_coding MGP_C3HHeJ_T0031368.1 MGP_C3HHeJ_G0018693.1 mouse_genomes_project 11 91346525 91349735 - Hlf protein_coding processed_transcript MGP_C3HHeJ_T0032126.1 MGP_C3HHeJ_G0018915.1 mouse_genomes_project 11 102389978 102399331 - MGP_C3HHeJ_P0032126 Dhx58 protein_coding protein_coding MGP_C3HHeJ_T0032127.1 MGP_C3HHeJ_G0018915.1 mouse_genomes_project 11 102390157 102391715 - Dhx58 protein_coding processed_transcript MGP_C3HHeJ_T0032128.1 MGP_C3HHeJ_G0018915.1 mouse_genomes_project 11 102390347 102394295 - Dhx58 protein_coding processed_transcript MGP_C3HHeJ_T0032129.1 MGP_C3HHeJ_G0018915.1 mouse_genomes_project 11 102396451 102399313 - Dhx58 protein_coding processed_transcript MGP_C3HHeJ_T0032130.1 MGP_C3HHeJ_G0018915.1 mouse_genomes_project 11 102397207 102398407 - Dhx58 protein_coding processed_transcript MGP_C3HHeJ_T0032131.1 MGP_C3HHeJ_G0018915.1 mouse_genomes_project 11 102397819 102399331 - Dhx58 protein_coding processed_transcript MGP_C3HHeJ_T0028782.1 MGP_C3HHeJ_G0018043.1 mouse_genomes_project 11 52459520 52465395 + Gdf9 protein_coding processed_transcript MGP_C3HHeJ_T0028783.1 MGP_C3HHeJ_G0018043.1 mouse_genomes_project 11 52461339 52462278 + Gdf9 protein_coding processed_transcript MGP_C3HHeJ_T0028784.1 MGP_C3HHeJ_G0018043.1 mouse_genomes_project 11 52461796 52466397 + MGP_C3HHeJ_P0028784 Gdf9 protein_coding protein_coding MGP_C3HHeJ_T0033626.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122001943 122005073 + Ccdc40 protein_coding processed_transcript MGP_C3HHeJ_T0033627.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122001949 122004989 + Ccdc40 protein_coding processed_transcript MGP_C3HHeJ_T0033628.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122002473 122036183 + MGP_C3HHeJ_P0033628 Ccdc40 protein_coding protein_coding MGP_C3HHeJ_T0033629.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122002478 122037728 + MGP_C3HHeJ_P0033629 Ccdc40 protein_coding protein_coding MGP_C3HHeJ_T0033630.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122012068 122025071 + Ccdc40 protein_coding retained_intron MGP_C3HHeJ_T0033631.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122026802 122037650 + Ccdc40 protein_coding retained_intron MGP_C3HHeJ_T0033632.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122032211 122038449 + Ccdc40 protein_coding processed_transcript MGP_C3HHeJ_T0033633.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122033051 122036403 + Ccdc40 protein_coding retained_intron MGP_C3HHeJ_T0033634.1 MGP_C3HHeJ_G0019225.1 mouse_genomes_project 11 122036154 122037520 + Ccdc40 protein_coding retained_intron MGP_C3HHeJ_T0016952.1 MGP_C3HHeJ_G0014921.1 mouse_genomes_project 11 21102549 21103329 - Gm12060 processed_transcript processed_transcript MGP_C3HHeJ_T0029814.1 MGP_C3HHeJ_G0018312.1 mouse_genomes_project 11 69696914 69711246 - MGP_C3HHeJ_P0029814 Nlgn2 protein_coding protein_coding MGP_C3HHeJ_T0029815.1 MGP_C3HHeJ_G0018312.1 mouse_genomes_project 11 69701553 69708073 - MGP_C3HHeJ_P0029815 Nlgn2 protein_coding protein_coding MGP_C3HHeJ_T0029816.1 MGP_C3HHeJ_G0018312.1 mouse_genomes_project 11 69701858 69702374 - Nlgn2 protein_coding retained_intron MGP_C3HHeJ_T0027498.1 MGP_C3HHeJ_G0017723.1 mouse_genomes_project 11 855809 871614 + MGP_C3HHeJ_P0027498 Pes1 protein_coding protein_coding MGP_C3HHeJ_T0027499.1 MGP_C3HHeJ_G0017723.1 mouse_genomes_project 11 855843 862635 + Pes1 protein_coding processed_transcript MGP_C3HHeJ_T0027500.1 MGP_C3HHeJ_G0017723.1 mouse_genomes_project 11 855883 868684 + Pes1 protein_coding processed_transcript MGP_C3HHeJ_T0009634.1 MGP_C3HHeJ_G0007767.1 mouse_genomes_project 11 78370943 78371015 - Mir451b miRNA miRNA MGP_C3HHeJ_T0031979.1 MGP_C3HHeJ_G0018840.1 mouse_genomes_project 11 100773963 100785269 - MGP_C3HHeJ_P0031979 Krt222 protein_coding protein_coding MGP_C3HHeJ_T0031980.1 MGP_C3HHeJ_G0018840.1 mouse_genomes_project 11 100775092 100785287 - MGP_C3HHeJ_P0031980 Krt222 protein_coding protein_coding MGP_C3HHeJ_T0031981.1 MGP_C3HHeJ_G0018840.1 mouse_genomes_project 11 100776145 100780079 - Krt222 protein_coding processed_transcript MGP_C3HHeJ_T0033905.1 MGP_C3HHeJ_G0019276.1 mouse_genomes_project 11 123640313 123643619 - Rfng protein_coding processed_transcript MGP_C3HHeJ_T0033906.1 MGP_C3HHeJ_G0019276.1 mouse_genomes_project 11 123640315 123643641 - MGP_C3HHeJ_P0033906 Rfng protein_coding protein_coding MGP_C3HHeJ_T0012595.1 MGP_C3HHeJ_G0010699.1 mouse_genomes_project 11 93922436 93923017 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012662.1 MGP_C3HHeJ_G0010766.1 mouse_genomes_project 11 123877177 123877470 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032921.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111109120 111141807 + MGP_C3HHeJ_P0032921 Axin2 protein_coding protein_coding MGP_C3HHeJ_T0032922.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111109571 111112365 + MGP_C3HHeJ_P0032922 Axin2 protein_coding protein_coding MGP_C3HHeJ_T0032923.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111110108 111112380 + MGP_C3HHeJ_P0032923 Axin2 protein_coding protein_coding MGP_C3HHeJ_T0032924.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111110420 111112276 + MGP_C3HHeJ_P0032924 Axin2 protein_coding protein_coding MGP_C3HHeJ_T0032925.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111111962 111140535 + MGP_C3HHeJ_P0032925 Axin2 protein_coding protein_coding MGP_C3HHeJ_T0032926.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111130083 111133775 + Axin2 protein_coding processed_transcript MGP_C3HHeJ_T0032927.1 MGP_C3HHeJ_G0019079.1 mouse_genomes_project 11 111134598 111141807 + Axin2 protein_coding processed_transcript MGP_C3HHeJ_T0009633.1 MGP_C3HHeJ_G0007766.1 mouse_genomes_project 11 78370943 78371015 + Mir451a miRNA miRNA MGP_C3HHeJ_T0028632.1 MGP_C3HHeJ_G0018003.1 mouse_genomes_project 11 49605177 49624531 - MGP_C3HHeJ_P0028632 Zfp354c protein_coding protein_coding MGP_C3HHeJ_T0028633.1 MGP_C3HHeJ_G0018003.1 mouse_genomes_project 11 49608655 49623299 - MGP_C3HHeJ_P0028633 Zfp354c protein_coding protein_coding MGP_C3HHeJ_T0028634.1 MGP_C3HHeJ_G0018003.1 mouse_genomes_project 11 49611284 49624527 - Zfp354c protein_coding processed_transcript MGP_C3HHeJ_T0028635.1 MGP_C3HHeJ_G0018003.1 mouse_genomes_project 11 49623116 49624565 - Zfp354c protein_coding processed_transcript MGP_C3HHeJ_T0003237.1 MGP_C3HHeJ_G0002989.1 mouse_genomes_project 11 103979716 103980402 - Gm11586 antisense antisense MGP_C3HHeJ_T0012490.1 MGP_C3HHeJ_G0010594.1 mouse_genomes_project 11 53290329 53290589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003221.1 MGP_C3HHeJ_G0002976.1 mouse_genomes_project 11 100939779 100940332 + Gm11940 antisense antisense MGP_C3HHeJ_T0027861.1 MGP_C3HHeJ_G0017804.1 mouse_genomes_project 11 13553159 13583338 + MGP_C3HHeJ_P0027861 Vstm2a protein_coding protein_coding MGP_C3HHeJ_T0027862.1 MGP_C3HHeJ_G0017804.1 mouse_genomes_project 11 13553238 13733156 + MGP_C3HHeJ_P0027862 Vstm2a protein_coding protein_coding MGP_C3HHeJ_T0027863.1 MGP_C3HHeJ_G0017804.1 mouse_genomes_project 11 13553476 13581238 + MGP_C3HHeJ_P0027863 Vstm2a protein_coding unknown_likely_coding MGP_C3HHeJ_T0003263.1 MGP_C3HHeJ_G0003013.1 mouse_genomes_project 11 111563482 111573902 - Gm11696 antisense antisense MGP_C3HHeJ_T0003264.1 MGP_C3HHeJ_G0003013.1 mouse_genomes_project 11 111564418 111565071 - Gm11696 antisense antisense MGP_C3HHeJ_T0003265.1 MGP_C3HHeJ_G0003013.1 mouse_genomes_project 11 111565420 111574346 - Gm11696 antisense antisense MGP_C3HHeJ_T0003266.1 MGP_C3HHeJ_G0003013.1 mouse_genomes_project 11 111565814 111573935 - Gm11696 antisense antisense MGP_C3HHeJ_T0012605.1 MGP_C3HHeJ_G0010709.1 mouse_genomes_project 11 98499109 98499229 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012512.1 MGP_C3HHeJ_G0010616.1 mouse_genomes_project 11 60294793 60296186 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032749.1 MGP_C3HHeJ_G0019044.1 mouse_genomes_project 11 108121053 108193391 + MGP_C3HHeJ_P0032749 Map3k3 protein_coding protein_coding MGP_C3HHeJ_T0032750.1 MGP_C3HHeJ_G0019044.1 mouse_genomes_project 11 108189156 108190323 + Map3k3 protein_coding processed_transcript MGP_C3HHeJ_T0032751.1 MGP_C3HHeJ_G0019044.1 mouse_genomes_project 11 108190008 108192085 + Map3k3 protein_coding processed_transcript MGP_C3HHeJ_T0031596.1 MGP_C3HHeJ_G0018747.1 mouse_genomes_project 11 97169810 97224159 - MGP_C3HHeJ_P0031596 B4galnt2 protein_coding protein_coding MGP_C3HHeJ_T0009592.1 MGP_C3HHeJ_G0007725.1 mouse_genomes_project 11 51034907 51035018 - Gm24157 miRNA miRNA MGP_C3HHeJ_T0027834.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9059337 9149468 - MGP_C3HHeJ_P0027834 Ddc protein_coding protein_coding MGP_C3HHeJ_T0027835.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9059337 9149368 - MGP_C3HHeJ_P0027835 Ddc protein_coding protein_coding MGP_C3HHeJ_T0027836.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9059339 9068153 - Ddc protein_coding processed_transcript MGP_C3HHeJ_T0027837.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9059339 9141909 - MGP_C3HHeJ_P0027837 Ddc protein_coding protein_coding MGP_C3HHeJ_T0027838.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9064585 9082507 - Ddc protein_coding processed_transcript MGP_C3HHeJ_T0027839.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9091191 9113724 - Ddc protein_coding processed_transcript MGP_C3HHeJ_T0027840.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9092702 9141870 - MGP_C3HHeJ_P0027840 Ddc protein_coding protein_coding MGP_C3HHeJ_T0027841.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9110642 9141902 - Ddc protein_coding processed_transcript MGP_C3HHeJ_T0027842.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9123961 9132218 - Ddc protein_coding processed_transcript MGP_C3HHeJ_T0027843.1 MGP_C3HHeJ_G0017801.1 mouse_genomes_project 11 9125900 9141899 - Ddc protein_coding processed_transcript MGP_C3HHeJ_T0012349.1 MGP_C3HHeJ_G0010453.1 mouse_genomes_project 11 998491 998961 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009609.1 MGP_C3HHeJ_G0007742.1 mouse_genomes_project 11 68797894 68797999 - Mir3062 miRNA miRNA MGP_C3HHeJ_T0033557.1 MGP_C3HHeJ_G0019209.1 mouse_genomes_project 11 120711466 120751538 + MGP_C3HHeJ_P0033557 Pgs1 protein_coding protein_coding MGP_C3HHeJ_T0033558.1 MGP_C3HHeJ_G0019209.1 mouse_genomes_project 11 120712059 120751538 + MGP_C3HHeJ_P0033558 Pgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033559.1 MGP_C3HHeJ_G0019209.1 mouse_genomes_project 11 120725879 120751452 + MGP_C3HHeJ_P0033559 Pgs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033560.1 MGP_C3HHeJ_G0019209.1 mouse_genomes_project 11 120738742 120751538 + Pgs1 protein_coding retained_intron MGP_C3HHeJ_T0032870.1 MGP_C3HHeJ_G0019069.1 mouse_genomes_project 11 109267915 109294949 - MGP_C3HHeJ_P0032870 Nol11 protein_coding protein_coding MGP_C3HHeJ_T0032871.1 MGP_C3HHeJ_G0019069.1 mouse_genomes_project 11 109267915 109294949 - MGP_C3HHeJ_P0032871 Nol11 protein_coding protein_coding MGP_C3HHeJ_T0032872.1 MGP_C3HHeJ_G0019069.1 mouse_genomes_project 11 109268612 109269686 - Nol11 protein_coding processed_transcript MGP_C3HHeJ_T0032873.1 MGP_C3HHeJ_G0019069.1 mouse_genomes_project 11 109282622 109290389 - Nol11 protein_coding processed_transcript MGP_C3HHeJ_T0032874.1 MGP_C3HHeJ_G0019069.1 mouse_genomes_project 11 109292107 109294920 - Nol11 protein_coding processed_transcript MGP_C3HHeJ_T0032631.1 MGP_C3HHeJ_G0019015.1 mouse_genomes_project 11 105461007 105551672 - MGP_C3HHeJ_P0032631 protein_coding protein_coding MGP_C3HHeJ_T0028489.1 MGP_C3HHeJ_G0017965.1 mouse_genomes_project 11 47552247 47553084 - MGP_C3HHeJ_P0028489 Psme2b protein_coding protein_coding MGP_C3HHeJ_T0030320.1 MGP_C3HHeJ_G0018426.1 mouse_genomes_project 11 73859993 74007237 + MGP_C3HHeJ_P0030320 protein_coding protein_coding MGP_C3HHeJ_T0030321.1 MGP_C3HHeJ_G0018426.1 mouse_genomes_project 11 73860011 74006768 + MGP_C3HHeJ_P0030321 protein_coding protein_coding MGP_C3HHeJ_T0030328.1 MGP_C3HHeJ_G0018426.1 mouse_genomes_project 11 74006298 74007237 + MGP_C3HHeJ_P0030328 protein_coding protein_coding MGP_C3HHeJ_T0031033.1 MGP_C3HHeJ_G0018613.1 mouse_genomes_project 11 84323201 84325535 + MGP_C3HHeJ_P0031033 Wfdc18 protein_coding protein_coding MGP_C3HHeJ_T0031034.1 MGP_C3HHeJ_G0018613.1 mouse_genomes_project 11 84323309 84325526 + MGP_C3HHeJ_P0031034 Wfdc18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031035.1 MGP_C3HHeJ_G0018613.1 mouse_genomes_project 11 84323311 84324885 + Wfdc18 protein_coding retained_intron MGP_C3HHeJ_T0030751.1 MGP_C3HHeJ_G0018528.1 mouse_genomes_project 11 78631572 78636385 + MGP_C3HHeJ_P0030751 Aldoc protein_coding protein_coding MGP_C3HHeJ_T0030752.1 MGP_C3HHeJ_G0018528.1 mouse_genomes_project 11 78631772 78633301 + Aldoc protein_coding retained_intron MGP_C3HHeJ_T0030753.1 MGP_C3HHeJ_G0018528.1 mouse_genomes_project 11 78632803 78635364 + MGP_C3HHeJ_P0030753 Aldoc protein_coding protein_coding MGP_C3HHeJ_T0030754.1 MGP_C3HHeJ_G0018528.1 mouse_genomes_project 11 78632929 78634722 + Aldoc protein_coding processed_transcript MGP_C3HHeJ_T0030755.1 MGP_C3HHeJ_G0018528.1 mouse_genomes_project 11 78633668 78634165 + Aldoc protein_coding processed_transcript MGP_C3HHeJ_T0030756.1 MGP_C3HHeJ_G0018528.1 mouse_genomes_project 11 78633932 78635312 + Aldoc protein_coding processed_transcript MGP_C3HHeJ_T0031343.1 MGP_C3HHeJ_G0018684.1 mouse_genomes_project 11 89911918 89941315 + MGP_C3HHeJ_P0031343 Trim25 protein_coding protein_coding MGP_C3HHeJ_T0031344.1 MGP_C3HHeJ_G0018684.1 mouse_genomes_project 11 89911918 89941315 + MGP_C3HHeJ_P0031344 Trim25 protein_coding protein_coding MGP_C3HHeJ_T0031345.1 MGP_C3HHeJ_G0018684.1 mouse_genomes_project 11 89911918 89934751 + MGP_C3HHeJ_P0031345 Trim25 protein_coding protein_coding MGP_C3HHeJ_T0032028.1 MGP_C3HHeJ_G0018884.1 mouse_genomes_project 11 101634198 101634959 - MGP_C3HHeJ_P0032028 Krtap17-1 protein_coding protein_coding MGP_C3HHeJ_T0006241.1 MGP_C3HHeJ_G0005199.1 mouse_genomes_project 11 91802627 91891001 + 4930405D11Rik lincRNA lincRNA MGP_C3HHeJ_T0006242.1 MGP_C3HHeJ_G0005199.1 mouse_genomes_project 11 91876659 91890945 + 4930405D11Rik lincRNA lincRNA MGP_C3HHeJ_T0006243.1 MGP_C3HHeJ_G0005199.1 mouse_genomes_project 11 91876684 91890851 + 4930405D11Rik lincRNA lincRNA MGP_C3HHeJ_T0006248.1 MGP_C3HHeJ_G0005204.1 mouse_genomes_project 11 97163077 97164090 - Gm11527 lincRNA lincRNA MGP_C3HHeJ_T0028694.1 MGP_C3HHeJ_G0018020.1 mouse_genomes_project 11 50495768 50502514 - MGP_C3HHeJ_P0028694 Hnrnpab protein_coding protein_coding MGP_C3HHeJ_T0028695.1 MGP_C3HHeJ_G0018020.1 mouse_genomes_project 11 50496537 50502514 - MGP_C3HHeJ_P0028695 Hnrnpab protein_coding protein_coding MGP_C3HHeJ_T0028696.1 MGP_C3HHeJ_G0018020.1 mouse_genomes_project 11 50496842 50502514 - MGP_C3HHeJ_P0028696 Hnrnpab protein_coding protein_coding MGP_C3HHeJ_T0012631.1 MGP_C3HHeJ_G0010735.1 mouse_genomes_project 11 107803048 107804315 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017019.1 MGP_C3HHeJ_G0014959.1 mouse_genomes_project 11 98286571 98327425 + D030028A08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017020.1 MGP_C3HHeJ_G0014959.1 mouse_genomes_project 11 98318102 98339024 + D030028A08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017021.1 MGP_C3HHeJ_G0014959.1 mouse_genomes_project 11 98318126 98334030 + D030028A08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017022.1 MGP_C3HHeJ_G0014959.1 mouse_genomes_project 11 98318249 98337859 + D030028A08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0032946.1 MGP_C3HHeJ_G0019085.1 mouse_genomes_project 11 111669571 111693711 - MGP_C3HHeJ_P0032946 Slc16a6 protein_coding protein_coding MGP_C3HHeJ_T0032947.1 MGP_C3HHeJ_G0019085.1 mouse_genomes_project 11 111671441 111693407 - MGP_C3HHeJ_P0032947 Slc16a6 protein_coding protein_coding MGP_C3HHeJ_T0032948.1 MGP_C3HHeJ_G0019085.1 mouse_genomes_project 11 111679210 111692801 - MGP_C3HHeJ_P0032948 Slc16a6 protein_coding protein_coding MGP_C3HHeJ_T0032949.1 MGP_C3HHeJ_G0019085.1 mouse_genomes_project 11 111686809 111693312 - Slc16a6 protein_coding processed_transcript MGP_C3HHeJ_T0030371.1 MGP_C3HHeJ_G0018451.1 mouse_genomes_project 11 74891452 74942868 + MGP_C3HHeJ_P0030371 Mettl16 protein_coding protein_coding MGP_C3HHeJ_T0030372.1 MGP_C3HHeJ_G0018451.1 mouse_genomes_project 11 74891452 74953481 + MGP_C3HHeJ_P0030372 Mettl16 protein_coding protein_coding MGP_C3HHeJ_T0030373.1 MGP_C3HHeJ_G0018451.1 mouse_genomes_project 11 74891538 74894244 + MGP_C3HHeJ_P0030373 Mettl16 protein_coding protein_coding MGP_C3HHeJ_T0030374.1 MGP_C3HHeJ_G0018451.1 mouse_genomes_project 11 74891547 74942868 + MGP_C3HHeJ_P0030374 Mettl16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030375.1 MGP_C3HHeJ_G0018451.1 mouse_genomes_project 11 74927455 74941920 + Mettl16 protein_coding retained_intron MGP_C3HHeJ_T0030376.1 MGP_C3HHeJ_G0018451.1 mouse_genomes_project 11 74932714 74942485 + Mettl16 protein_coding processed_transcript MGP_C3HHeJ_T0027871.1 MGP_C3HHeJ_G0017806.1 mouse_genomes_project 11 14067421 14204618 + MGP_C3HHeJ_P0027871 Egfr protein_coding protein_coding MGP_C3HHeJ_T0027872.1 MGP_C3HHeJ_G0017806.1 mouse_genomes_project 11 14067429 14236517 + MGP_C3HHeJ_P0027872 Egfr protein_coding protein_coding MGP_C3HHeJ_T0027873.1 MGP_C3HHeJ_G0017806.1 mouse_genomes_project 11 14067448 14108941 + Egfr protein_coding processed_transcript MGP_C3HHeJ_T0027874.1 MGP_C3HHeJ_G0017806.1 mouse_genomes_project 11 14195701 14201052 + MGP_C3HHeJ_P0027874 Egfr protein_coding protein_coding MGP_C3HHeJ_T0027875.1 MGP_C3HHeJ_G0017806.1 mouse_genomes_project 11 14222687 14228308 + Egfr protein_coding processed_transcript MGP_C3HHeJ_T0003233.1 MGP_C3HHeJ_G0002985.1 mouse_genomes_project 11 103712674 103717658 + Gm11551 antisense antisense MGP_C3HHeJ_T0012531.1 MGP_C3HHeJ_G0010635.1 mouse_genomes_project 11 69476015 69476197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030798.1 MGP_C3HHeJ_G0018541.1 mouse_genomes_project 11 78868787 78878041 - MGP_C3HHeJ_P0030798 Tmem97 protein_coding protein_coding MGP_C3HHeJ_T0030269.1 MGP_C3HHeJ_G0018405.1 mouse_genomes_project 11 73161292 73164100 - MGP_C3HHeJ_P0030269 Gsg2 protein_coding protein_coding MGP_C3HHeJ_T0028124.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27470687 27522795 + MGP_C3HHeJ_P0028124 Rtn4 protein_coding protein_coding MGP_C3HHeJ_T0028125.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27470687 27524208 + MGP_C3HHeJ_P0028125 Rtn4 protein_coding protein_coding MGP_C3HHeJ_T0028126.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27470687 27522795 + MGP_C3HHeJ_P0028126 Rtn4 protein_coding protein_coding MGP_C3HHeJ_T0028127.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27470688 27521968 + MGP_C3HHeJ_P0028127 Rtn4 protein_coding protein_coding MGP_C3HHeJ_T0028128.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27471514 27522795 + MGP_C3HHeJ_P0028128 Rtn4 protein_coding protein_coding MGP_C3HHeJ_T0028129.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27495999 27522795 + MGP_C3HHeJ_P0028129 Rtn4 protein_coding protein_coding MGP_C3HHeJ_T0028130.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27513558 27522296 + Rtn4 protein_coding processed_transcript MGP_C3HHeJ_T0028131.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27513633 27522208 + Rtn4 protein_coding processed_transcript MGP_C3HHeJ_T0028132.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27516255 27522208 + Rtn4 protein_coding processed_transcript MGP_C3HHeJ_T0028133.1 MGP_C3HHeJ_G0017865.1 mouse_genomes_project 11 27520861 27522146 + Rtn4 protein_coding processed_transcript MGP_C3HHeJ_T0012423.1 MGP_C3HHeJ_G0010527.1 mouse_genomes_project 11 25160949 25161670 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012429.1 MGP_C3HHeJ_G0010533.1 mouse_genomes_project 11 27120000 27120258 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012532.1 MGP_C3HHeJ_G0010636.1 mouse_genomes_project 11 69595686 69596276 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033580.1 MGP_C3HHeJ_G0019215.1 mouse_genomes_project 11 121143571 121148974 - MGP_C3HHeJ_P0033580 Lgals3bp protein_coding protein_coding MGP_C3HHeJ_T0033581.1 MGP_C3HHeJ_G0019215.1 mouse_genomes_project 11 121143571 121152935 - MGP_C3HHeJ_P0033581 Lgals3bp protein_coding protein_coding MGP_C3HHeJ_T0033582.1 MGP_C3HHeJ_G0019215.1 mouse_genomes_project 11 121147427 121152695 - MGP_C3HHeJ_P0033582 Lgals3bp protein_coding protein_coding MGP_C3HHeJ_T0033583.1 MGP_C3HHeJ_G0019215.1 mouse_genomes_project 11 121147629 121152715 - Lgals3bp protein_coding processed_transcript MGP_C3HHeJ_T0033584.1 MGP_C3HHeJ_G0019215.1 mouse_genomes_project 11 121150602 121151880 - MGP_C3HHeJ_P0033584 Lgals3bp protein_coding protein_coding MGP_C3HHeJ_T0012409.1 MGP_C3HHeJ_G0010513.1 mouse_genomes_project 11 19349516 19350460 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031883.1 MGP_C3HHeJ_G0018819.1 mouse_genomes_project 11 100069758 100077267 - MGP_C3HHeJ_P0031883 Ormdl3 protein_coding protein_coding MGP_C3HHeJ_T0031358.1 MGP_C3HHeJ_G0018692.1 mouse_genomes_project 11 91143324 91202615 + Mmd protein_coding processed_transcript MGP_C3HHeJ_T0031359.1 MGP_C3HHeJ_G0018692.1 mouse_genomes_project 11 91143324 91204974 + Mmd protein_coding processed_transcript MGP_C3HHeJ_T0031360.1 MGP_C3HHeJ_G0018692.1 mouse_genomes_project 11 91143326 91181814 + Mmd protein_coding processed_transcript MGP_C3HHeJ_T0031361.1 MGP_C3HHeJ_G0018692.1 mouse_genomes_project 11 91203174 91222069 + MGP_C3HHeJ_P0031361 Mmd protein_coding protein_coding MGP_C3HHeJ_T0031362.1 MGP_C3HHeJ_G0018692.1 mouse_genomes_project 11 91203194 91233074 + MGP_C3HHeJ_P0031362 Mmd protein_coding protein_coding MGP_C3HHeJ_T0099998.1 MGP_C3HHeJ_G0038192.1 mouse_genomes_project 11 20355660 20355762 + Gm23772 snoRNA snoRNA MGP_C3HHeJ_T0003097.1 MGP_C3HHeJ_G0002878.1 mouse_genomes_project 11 53339596 53346539 + Gm12223 antisense antisense MGP_C3HHeJ_T0012391.1 MGP_C3HHeJ_G0010495.1 mouse_genomes_project 11 16734036 16734180 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031204.1 MGP_C3HHeJ_G0018649.1 mouse_genomes_project 11 87523150 87563372 - MGP_C3HHeJ_P0031204 Dhx40 protein_coding protein_coding MGP_C3HHeJ_T0031205.1 MGP_C3HHeJ_G0018649.1 mouse_genomes_project 11 87529671 87555831 - MGP_C3HHeJ_P0031205 Dhx40 protein_coding protein_coding MGP_C3HHeJ_T0031206.1 MGP_C3HHeJ_G0018649.1 mouse_genomes_project 11 87539220 87543917 - Dhx40 protein_coding processed_transcript MGP_C3HHeJ_T0031207.1 MGP_C3HHeJ_G0018649.1 mouse_genomes_project 11 87554567 87562665 - Dhx40 protein_coding processed_transcript MGP_C3HHeJ_T0012427.1 MGP_C3HHeJ_G0010531.1 mouse_genomes_project 11 27098085 27099025 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012651.1 MGP_C3HHeJ_G0010755.1 mouse_genomes_project 11 118172175 118172712 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029449.1 MGP_C3HHeJ_G0018220.1 mouse_genomes_project 11 62658564 62694195 + MGP_C3HHeJ_P0029449 Tekt3 protein_coding protein_coding MGP_C3HHeJ_T0033409.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119174209 119179940 + MGP_C3HHeJ_P0033409 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033410.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119174405 119178983 + MGP_C3HHeJ_P0033410 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033411.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119174446 119178567 + Sphk1 protein_coding retained_intron MGP_C3HHeJ_T0033412.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175026 119179940 + MGP_C3HHeJ_P0033412 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033413.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175193 119179953 + MGP_C3HHeJ_P0033413 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033414.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175726 119179957 + MGP_C3HHeJ_P0033414 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033415.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175733 119179951 + Sphk1 protein_coding retained_intron MGP_C3HHeJ_T0033416.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175736 119178995 + MGP_C3HHeJ_P0033416 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033417.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175739 119178624 + MGP_C3HHeJ_P0033417 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033418.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119175755 119179957 + MGP_C3HHeJ_P0033418 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033419.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119176207 119179940 + MGP_C3HHeJ_P0033419 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033420.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119176533 119178919 + Sphk1 protein_coding processed_transcript MGP_C3HHeJ_T0033421.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119176550 119179278 + MGP_C3HHeJ_P0033421 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033422.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119176857 119178981 + MGP_C3HHeJ_P0033422 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0033423.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119177442 119178571 + Sphk1 protein_coding retained_intron MGP_C3HHeJ_T0033424.1 MGP_C3HHeJ_G0019179.1 mouse_genomes_project 11 119178022 119179953 + MGP_C3HHeJ_P0033424 Sphk1 protein_coding protein_coding MGP_C3HHeJ_T0029734.1 MGP_C3HHeJ_G0018291.1 mouse_genomes_project 11 69422864 69432965 + Trp53 protein_coding processed_transcript MGP_C3HHeJ_T0029735.1 MGP_C3HHeJ_G0018291.1 mouse_genomes_project 11 69429349 69433891 + MGP_C3HHeJ_P0029735 Trp53 protein_coding protein_coding MGP_C3HHeJ_T0029736.1 MGP_C3HHeJ_G0018291.1 mouse_genomes_project 11 69429349 69433768 + MGP_C3HHeJ_P0029736 Trp53 protein_coding protein_coding MGP_C3HHeJ_T0029737.1 MGP_C3HHeJ_G0018291.1 mouse_genomes_project 11 69431155 69432282 + Trp53 protein_coding processed_transcript MGP_C3HHeJ_T0030313.1 MGP_C3HHeJ_G0018422.1 mouse_genomes_project 11 73646972 73647911 - MGP_C3HHeJ_P0030313 Olfr385 protein_coding protein_coding MGP_C3HHeJ_T0012623.1 MGP_C3HHeJ_G0010727.1 mouse_genomes_project 11 105528146 105529010 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006105.1 MGP_C3HHeJ_G0005090.1 mouse_genomes_project 11 17006001 17007302 - Gm12027 lincRNA lincRNA MGP_C3HHeJ_T0012498.1 MGP_C3HHeJ_G0010602.1 mouse_genomes_project 11 56642971 56643709 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034005.1 MGP_C3HHeJ_G0019299.1 mouse_genomes_project 11 124403615 124411971 - MGP_C3HHeJ_P0034005 Zfp750 protein_coding protein_coding MGP_C3HHeJ_T0029444.1 MGP_C3HHeJ_G0018218.1 mouse_genomes_project 11 62469330 62484899 + MGP_C3HHeJ_P0029444 Tvp23b protein_coding protein_coding MGP_C3HHeJ_T0029445.1 MGP_C3HHeJ_G0018218.1 mouse_genomes_project 11 62469365 62481759 + Tvp23b protein_coding processed_transcript MGP_C3HHeJ_T0029446.1 MGP_C3HHeJ_G0018218.1 mouse_genomes_project 11 62469489 62475063 + Tvp23b protein_coding processed_transcript MGP_C3HHeJ_T0029447.1 MGP_C3HHeJ_G0018218.1 mouse_genomes_project 11 62473524 62510882 + Tvp23b protein_coding processed_transcript MGP_C3HHeJ_T0006139.1 MGP_C3HHeJ_G0005118.1 mouse_genomes_project 11 31047601 31051024 + lincRNA lincRNA MGP_C3HHeJ_T0009595.1 MGP_C3HHeJ_G0007728.1 mouse_genomes_project 11 52816836 52816894 - Mir7671 miRNA miRNA MGP_C3HHeJ_T0033808.1 MGP_C3HHeJ_G0019259.1 mouse_genomes_project 11 123400509 123413351 - MGP_C3HHeJ_P0033808 P4hb protein_coding protein_coding MGP_C3HHeJ_T0033809.1 MGP_C3HHeJ_G0019259.1 mouse_genomes_project 11 123400516 123401448 - P4hb protein_coding processed_transcript MGP_C3HHeJ_T0033810.1 MGP_C3HHeJ_G0019259.1 mouse_genomes_project 11 123401156 123412939 - MGP_C3HHeJ_P0033810 P4hb protein_coding protein_coding MGP_C3HHeJ_T0012497.1 MGP_C3HHeJ_G0010601.1 mouse_genomes_project 11 55647303 55648029 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028624.1 MGP_C3HHeJ_G0018001.1 mouse_genomes_project 11 49182709 49225373 - MGP_C3HHeJ_P0028624 Rufy1 protein_coding protein_coding MGP_C3HHeJ_T0028625.1 MGP_C3HHeJ_G0018001.1 mouse_genomes_project 11 49182796 49207962 - Rufy1 protein_coding processed_transcript MGP_C3HHeJ_T0028626.1 MGP_C3HHeJ_G0018001.1 mouse_genomes_project 11 49201289 49216239 - Rufy1 protein_coding processed_transcript MGP_C3HHeJ_T0030080.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599902 70618869 - MGP_C3HHeJ_P0030080 Camta2 protein_coding protein_coding MGP_C3HHeJ_T0030081.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599902 70617286 - MGP_C3HHeJ_P0030081 Camta2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030082.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599902 70618840 - MGP_C3HHeJ_P0030082 Camta2 protein_coding protein_coding MGP_C3HHeJ_T0030083.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599902 70619002 - MGP_C3HHeJ_P0030083 Camta2 protein_coding protein_coding MGP_C3HHeJ_T0030084.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599902 70618840 - MGP_C3HHeJ_P0030084 Camta2 protein_coding protein_coding MGP_C3HHeJ_T0030085.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599902 70618850 - MGP_C3HHeJ_P0030085 Camta2 protein_coding protein_coding MGP_C3HHeJ_T0030086.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599903 70618852 - MGP_C3HHeJ_P0030086 Camta2 protein_coding protein_coding MGP_C3HHeJ_T0030087.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70599905 70614673 - Camta2 protein_coding retained_intron MGP_C3HHeJ_T0030088.1 MGP_C3HHeJ_G0018365.1 mouse_genomes_project 11 70616810 70618845 - Camta2 protein_coding retained_intron MGP_C3HHeJ_T0097987.1 MGP_C3HHeJ_G0036199.1 mouse_genomes_project 11 8375223 8375353 + Gm23065 rRNA rRNA MGP_C3HHeJ_T0028653.1 MGP_C3HHeJ_G0018009.1 mouse_genomes_project 11 49743872 49746927 - MGP_C3HHeJ_P0028653 4933414I15Rik protein_coding protein_coding MGP_C3HHeJ_T0028654.1 MGP_C3HHeJ_G0018009.1 mouse_genomes_project 11 49744859 49746903 - 4933414I15Rik protein_coding processed_transcript MGP_C3HHeJ_T0098348.1 MGP_C3HHeJ_G0036559.1 mouse_genomes_project 11 80958217 80959921 - C030013C21Rik sense_intronic sense_intronic MGP_C3HHeJ_T0031346.1 MGP_C3HHeJ_G0018685.1 mouse_genomes_project 11 89960557 89993784 - MGP_C3HHeJ_P0031346 Dgke protein_coding protein_coding MGP_C3HHeJ_T0031347.1 MGP_C3HHeJ_G0018685.1 mouse_genomes_project 11 89962954 89987711 - MGP_C3HHeJ_P0031347 Dgke protein_coding protein_coding MGP_C3HHeJ_T0031348.1 MGP_C3HHeJ_G0018685.1 mouse_genomes_project 11 89964599 89987711 - MGP_C3HHeJ_P0031348 Dgke protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032298.1 MGP_C3HHeJ_G0018956.1 mouse_genomes_project 11 103229883 103236515 + Rnd2 protein_coding processed_transcript MGP_C3HHeJ_T0032299.1 MGP_C3HHeJ_G0018956.1 mouse_genomes_project 11 103230368 103235767 + Rnd2 protein_coding processed_transcript MGP_C3HHeJ_T0032300.1 MGP_C3HHeJ_G0018956.1 mouse_genomes_project 11 103233059 103236515 + MGP_C3HHeJ_P0032300 Rnd2 protein_coding protein_coding MGP_C3HHeJ_T0032251.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103031056 103045048 - Becn1 protein_coding retained_intron MGP_C3HHeJ_T0032252.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103031056 103045056 - Becn1 protein_coding retained_intron MGP_C3HHeJ_T0032253.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103031056 103045082 - MGP_C3HHeJ_P0032253 Becn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032254.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103031058 103045069 - MGP_C3HHeJ_P0032254 Becn1 protein_coding protein_coding MGP_C3HHeJ_T0032255.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103031670 103045033 - MGP_C3HHeJ_P0032255 Becn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032256.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103031682 103036837 - Becn1 protein_coding retained_intron MGP_C3HHeJ_T0032257.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103032674 103035294 - Becn1 protein_coding processed_transcript MGP_C3HHeJ_T0032258.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103033279 103044533 - MGP_C3HHeJ_P0032258 Becn1 protein_coding protein_coding MGP_C3HHeJ_T0032259.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103034178 103039103 - MGP_C3HHeJ_P0032259 Becn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032260.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103034294 103045034 - MGP_C3HHeJ_P0032260 Becn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032261.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103034325 103038232 - Becn1 protein_coding retained_intron MGP_C3HHeJ_T0032262.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103038342 103045002 - MGP_C3HHeJ_P0032262 Becn1 protein_coding protein_coding MGP_C3HHeJ_T0032263.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103038702 103045045 - MGP_C3HHeJ_P0032263 Becn1 protein_coding protein_coding MGP_C3HHeJ_T0032264.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103039021 103045036 - Becn1 protein_coding retained_intron MGP_C3HHeJ_T0032265.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103040872 103045051 - Becn1 protein_coding processed_transcript MGP_C3HHeJ_T0032266.1 MGP_C3HHeJ_G0018944.1 mouse_genomes_project 11 103044256 103045037 - Becn1 protein_coding retained_intron MGP_C3HHeJ_T0031886.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100139221 100151210 + MGP_C3HHeJ_P0031886 Gsdma2 protein_coding protein_coding MGP_C3HHeJ_T0031887.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100139225 100142368 + Gsdma2 protein_coding processed_transcript MGP_C3HHeJ_T0031888.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100139225 100151199 + MGP_C3HHeJ_P0031888 Gsdma2 protein_coding protein_coding MGP_C3HHeJ_T0031889.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100139231 100141329 + Gsdma2 protein_coding processed_transcript MGP_C3HHeJ_T0031890.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100139237 100141940 + Gsdma2 protein_coding processed_transcript MGP_C3HHeJ_T0031891.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100142901 100144303 + Gsdma2 protein_coding processed_transcript MGP_C3HHeJ_T0031892.1 MGP_C3HHeJ_G0018821.1 mouse_genomes_project 11 100143763 100148050 + Gsdma2 protein_coding processed_transcript MGP_C3HHeJ_T0011705.1 MGP_C3HHeJ_G0009834.1 mouse_genomes_project 11 74030124 74031061 + MGP_C3HHeJ_P0011705 Olfr22-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011221.1 MGP_C3HHeJ_G0009354.1 mouse_genomes_project 11 107152991 107153087 + Gm24290 misc_RNA misc_RNA MGP_C3HHeJ_T0028374.1 MGP_C3HHeJ_G0017929.1 mouse_genomes_project 11 41971125 41973126 + MGP_C3HHeJ_P0028374 4933415A04Rik protein_coding protein_coding MGP_C3HHeJ_T0032834.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108850398 108858984 - MGP_C3HHeJ_P0032834 Ddx5 protein_coding protein_coding MGP_C3HHeJ_T0032835.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108851591 108858946 - MGP_C3HHeJ_P0032835 Ddx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032836.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108852019 108858940 - MGP_C3HHeJ_P0032836 Ddx5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032837.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108853758 108858919 - Ddx5 protein_coding processed_transcript MGP_C3HHeJ_T0032838.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108854187 108855501 - Ddx5 protein_coding retained_intron MGP_C3HHeJ_T0032839.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108855597 108856505 - Ddx5 protein_coding processed_transcript MGP_C3HHeJ_T0032840.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108855950 108859637 - MGP_C3HHeJ_P0032840 Ddx5 protein_coding protein_coding MGP_C3HHeJ_T0032841.1 MGP_C3HHeJ_G0019064.1 mouse_genomes_project 11 108856525 108859335 - MGP_C3HHeJ_P0032841 Ddx5 protein_coding protein_coding MGP_C3HHeJ_T0032973.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112253583 112336623 - MGP_C3HHeJ_P0032973 Abca8a protein_coding protein_coding MGP_C3HHeJ_T0032974.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112253585 112336582 - MGP_C3HHeJ_P0032974 Abca8a protein_coding protein_coding MGP_C3HHeJ_T0032975.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112253585 112336582 - MGP_C3HHeJ_P0032975 Abca8a protein_coding protein_coding MGP_C3HHeJ_T0032976.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112254797 112258021 - Abca8a protein_coding processed_transcript MGP_C3HHeJ_T0032977.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112299231 112306074 - Abca8a protein_coding processed_transcript MGP_C3HHeJ_T0032978.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112309451 112311036 - Abca8a protein_coding processed_transcript MGP_C3HHeJ_T0032979.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112310969 112316314 - MGP_C3HHeJ_P0032979 Abca8a protein_coding protein_coding MGP_C3HHeJ_T0032980.1 MGP_C3HHeJ_G0019092.1 mouse_genomes_project 11 112324820 112336582 - MGP_C3HHeJ_P0032980 Abca8a protein_coding protein_coding MGP_C3HHeJ_T0027910.1 MGP_C3HHeJ_G0017819.1 mouse_genomes_project 11 17617625 17635612 + Rab1a protein_coding processed_transcript MGP_C3HHeJ_T0027911.1 MGP_C3HHeJ_G0017819.1 mouse_genomes_project 11 17617795 17639585 + Rab1a protein_coding processed_transcript MGP_C3HHeJ_T0027912.1 MGP_C3HHeJ_G0017819.1 mouse_genomes_project 11 17617816 17642827 + MGP_C3HHeJ_P0027912 Rab1a protein_coding protein_coding MGP_C3HHeJ_T0003214.1 MGP_C3HHeJ_G0002971.1 mouse_genomes_project 11 98980016 98989495 + antisense antisense MGP_C3HHeJ_T0009665.1 MGP_C3HHeJ_G0007798.1 mouse_genomes_project 11 104066157 104066268 - Mir8101 miRNA miRNA MGP_C3HHeJ_T0029668.1 MGP_C3HHeJ_G0018273.1 mouse_genomes_project 11 68931985 68935609 + MGP_C3HHeJ_P0029668 Hes7 protein_coding protein_coding MGP_C3HHeJ_T0029027.1 MGP_C3HHeJ_G0018119.1 mouse_genomes_project 11 57983500 57984523 + MGP_C3HHeJ_P0029027 Olfr319 protein_coding protein_coding MGP_C3HHeJ_T0032895.1 MGP_C3HHeJ_G0019076.1 mouse_genomes_project 11 110088779 110515861 - MGP_C3HHeJ_P0032895 Prkca protein_coding protein_coding MGP_C3HHeJ_T0032896.1 MGP_C3HHeJ_G0019076.1 mouse_genomes_project 11 110093585 110135857 - MGP_C3HHeJ_P0032896 Prkca protein_coding protein_coding MGP_C3HHeJ_T0032897.1 MGP_C3HHeJ_G0019076.1 mouse_genomes_project 11 110134611 110175706 - Prkca protein_coding processed_transcript MGP_C3HHeJ_T0032898.1 MGP_C3HHeJ_G0019076.1 mouse_genomes_project 11 110359932 110515581 - Prkca protein_coding processed_transcript MGP_C3HHeJ_T0027827.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9031841 9054208 - Fignl1 protein_coding processed_transcript MGP_C3HHeJ_T0027828.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9031853 9046744 - Fignl1 protein_coding processed_transcript MGP_C3HHeJ_T0027829.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9045570 9054245 - MGP_C3HHeJ_P0027829 Fignl1 protein_coding protein_coding MGP_C3HHeJ_T0027830.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9045570 9054245 - MGP_C3HHeJ_P0027830 Fignl1 protein_coding protein_coding MGP_C3HHeJ_T0027831.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9045570 9054242 - MGP_C3HHeJ_P0027831 Fignl1 protein_coding protein_coding MGP_C3HHeJ_T0027832.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9045834 9054215 - MGP_C3HHeJ_P0027832 Fignl1 protein_coding protein_coding MGP_C3HHeJ_T0027833.1 MGP_C3HHeJ_G0017800.1 mouse_genomes_project 11 9047979 9054231 - MGP_C3HHeJ_P0027833 Fignl1 protein_coding protein_coding MGP_C3HHeJ_T0028948.1 MGP_C3HHeJ_G0018086.1 mouse_genomes_project 11 55642828 55650539 + MGP_C3HHeJ_P0028948 protein_coding protein_coding MGP_C3HHeJ_T0028974.1 MGP_C3HHeJ_G0018095.1 mouse_genomes_project 11 57357016 57409398 - MGP_C3HHeJ_P0028974 Gemin5 protein_coding protein_coding MGP_C3HHeJ_T0028975.1 MGP_C3HHeJ_G0018095.1 mouse_genomes_project 11 57358304 57409398 - MGP_C3HHeJ_P0028975 Gemin5 protein_coding protein_coding MGP_C3HHeJ_T0028976.1 MGP_C3HHeJ_G0018095.1 mouse_genomes_project 11 57358304 57409398 - MGP_C3HHeJ_P0028976 Gemin5 protein_coding protein_coding MGP_C3HHeJ_T0028977.1 MGP_C3HHeJ_G0018095.1 mouse_genomes_project 11 57377598 57380278 - Gemin5 protein_coding processed_transcript MGP_C3HHeJ_T0028978.1 MGP_C3HHeJ_G0018095.1 mouse_genomes_project 11 57395613 57401632 - MGP_C3HHeJ_P0028978 Gemin5 protein_coding protein_coding MGP_C3HHeJ_T0029039.1 MGP_C3HHeJ_G0018128.1 mouse_genomes_project 11 58115328 58116171 + MGP_C3HHeJ_P0029039 protein_coding protein_coding MGP_C3HHeJ_T0028266.1 MGP_C3HHeJ_G0017902.1 mouse_genomes_project 11 31627191 31679661 - MGP_C3HHeJ_P0028266 Kcnip1 protein_coding protein_coding MGP_C3HHeJ_T0028267.1 MGP_C3HHeJ_G0017902.1 mouse_genomes_project 11 31627199 31859695 - MGP_C3HHeJ_P0028267 Kcnip1 protein_coding protein_coding MGP_C3HHeJ_T0028268.1 MGP_C3HHeJ_G0017902.1 mouse_genomes_project 11 31627199 31859753 - MGP_C3HHeJ_P0028268 Kcnip1 protein_coding protein_coding MGP_C3HHeJ_T0028269.1 MGP_C3HHeJ_G0017902.1 mouse_genomes_project 11 31638589 32012006 - Kcnip1 protein_coding processed_transcript MGP_C3HHeJ_T0028270.1 MGP_C3HHeJ_G0017902.1 mouse_genomes_project 11 31638913 32011842 - Kcnip1 protein_coding processed_transcript MGP_C3HHeJ_T0033897.1 MGP_C3HHeJ_G0019274.1 mouse_genomes_project 11 123583051 123586032 - MGP_C3HHeJ_P0033897 Dcxr protein_coding protein_coding MGP_C3HHeJ_T0033898.1 MGP_C3HHeJ_G0019274.1 mouse_genomes_project 11 123583051 123585994 - MGP_C3HHeJ_P0033898 Dcxr protein_coding protein_coding MGP_C3HHeJ_T0033899.1 MGP_C3HHeJ_G0019274.1 mouse_genomes_project 11 123583077 123585995 - Dcxr protein_coding retained_intron MGP_C3HHeJ_T0033900.1 MGP_C3HHeJ_G0019274.1 mouse_genomes_project 11 123583107 123585980 - Dcxr protein_coding processed_transcript MGP_C3HHeJ_T0011210.1 MGP_C3HHeJ_G0009343.1 mouse_genomes_project 11 72326083 72326354 + Gm23224 misc_RNA misc_RNA MGP_C3HHeJ_T0006107.1 MGP_C3HHeJ_G0005092.1 mouse_genomes_project 11 18277851 18278290 - Gm12037 lincRNA lincRNA MGP_C3HHeJ_T0031934.1 MGP_C3HHeJ_G0018830.1 mouse_genomes_project 11 100351097 100368822 + MGP_C3HHeJ_P0031934 Rapgefl1 protein_coding protein_coding MGP_C3HHeJ_T0031935.1 MGP_C3HHeJ_G0018830.1 mouse_genomes_project 11 100360229 100362505 + Rapgefl1 protein_coding retained_intron MGP_C3HHeJ_T0031936.1 MGP_C3HHeJ_G0018830.1 mouse_genomes_project 11 100365480 100368124 + Rapgefl1 protein_coding retained_intron MGP_C3HHeJ_T0012652.1 MGP_C3HHeJ_G0010756.1 mouse_genomes_project 11 118254068 118254137 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029510.1 MGP_C3HHeJ_G0018238.1 mouse_genomes_project 11 66784311 66811475 + MGP_C3HHeJ_P0029510 Myh3 protein_coding protein_coding MGP_C3HHeJ_T0029511.1 MGP_C3HHeJ_G0018238.1 mouse_genomes_project 11 66784311 66811475 + MGP_C3HHeJ_P0029511 Myh3 protein_coding protein_coding MGP_C3HHeJ_T0029512.1 MGP_C3HHeJ_G0018238.1 mouse_genomes_project 11 66784311 66811470 + MGP_C3HHeJ_P0029512 Myh3 protein_coding protein_coding MGP_C3HHeJ_T0034013.1 MGP_C3HHeJ_G0019301.1 mouse_genomes_project 11 124603593 124617104 + MGP_C3HHeJ_P0034013 Metrnl protein_coding protein_coding MGP_C3HHeJ_T0034014.1 MGP_C3HHeJ_G0019301.1 mouse_genomes_project 11 124603814 124616877 + MGP_C3HHeJ_P0034014 Metrnl protein_coding protein_coding MGP_C3HHeJ_T0030453.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75688159 75699789 + MGP_C3HHeJ_P0030453 Slc43a2 protein_coding protein_coding MGP_C3HHeJ_T0030454.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75688163 75734747 + MGP_C3HHeJ_P0030454 Slc43a2 protein_coding protein_coding MGP_C3HHeJ_T0030455.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75688163 75731102 + MGP_C3HHeJ_P0030455 Slc43a2 protein_coding protein_coding MGP_C3HHeJ_T0030456.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75688208 75702243 + MGP_C3HHeJ_P0030456 Slc43a2 protein_coding protein_coding MGP_C3HHeJ_T0030457.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75688577 75734742 + MGP_C3HHeJ_P0030457 Slc43a2 protein_coding protein_coding MGP_C3HHeJ_T0030458.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75688603 75702296 + MGP_C3HHeJ_P0030458 Slc43a2 protein_coding protein_coding MGP_C3HHeJ_T0030459.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75694473 75702230 + Slc43a2 protein_coding processed_transcript MGP_C3HHeJ_T0030460.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75717266 75723519 + Slc43a2 protein_coding retained_intron MGP_C3HHeJ_T0030461.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75722458 75726643 + Slc43a2 protein_coding processed_transcript MGP_C3HHeJ_T0030462.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75723154 75729631 + Slc43a2 protein_coding retained_intron MGP_C3HHeJ_T0030463.1 MGP_C3HHeJ_G0018470.1 mouse_genomes_project 11 75723267 75729009 + Slc43a2 protein_coding processed_transcript MGP_C3HHeJ_T0098816.1 MGP_C3HHeJ_G0037010.1 mouse_genomes_project 11 100466593 100466700 + Gm22061 snRNA snRNA MGP_C3HHeJ_T0029413.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62225669 62243666 + MGP_C3HHeJ_P0029413 Mmgt2 protein_coding protein_coding MGP_C3HHeJ_T0029414.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62225818 62240830 + Mmgt2 protein_coding retained_intron MGP_C3HHeJ_T0029415.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62225822 62243596 + Mmgt2 protein_coding processed_transcript MGP_C3HHeJ_T0029416.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62225825 62243528 + Mmgt2 protein_coding processed_transcript MGP_C3HHeJ_T0029417.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62225836 62243736 + MGP_C3HHeJ_P0029417 Mmgt2 protein_coding protein_coding MGP_C3HHeJ_T0029418.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62225840 62244043 + MGP_C3HHeJ_P0029418 Mmgt2 protein_coding protein_coding MGP_C3HHeJ_T0029419.1 MGP_C3HHeJ_G0018212.1 mouse_genomes_project 11 62226454 62245164 + MGP_C3HHeJ_P0029419 Mmgt2 protein_coding protein_coding MGP_C3HHeJ_T0031709.1 MGP_C3HHeJ_G0018780.1 mouse_genomes_project 11 98520108 98533656 - MGP_C3HHeJ_P0031709 Tbkbp1 protein_coding protein_coding MGP_C3HHeJ_T0031710.1 MGP_C3HHeJ_G0018780.1 mouse_genomes_project 11 98520110 98533656 - MGP_C3HHeJ_P0031710 Tbkbp1 protein_coding protein_coding MGP_C3HHeJ_T0031711.1 MGP_C3HHeJ_G0018780.1 mouse_genomes_project 11 98520114 98533990 - MGP_C3HHeJ_P0031711 Tbkbp1 protein_coding protein_coding MGP_C3HHeJ_T0031712.1 MGP_C3HHeJ_G0018780.1 mouse_genomes_project 11 98521036 98534980 - MGP_C3HHeJ_P0031712 Tbkbp1 protein_coding protein_coding MGP_C3HHeJ_T0031713.1 MGP_C3HHeJ_G0018780.1 mouse_genomes_project 11 98522343 98533992 - MGP_C3HHeJ_P0031713 Tbkbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031714.1 MGP_C3HHeJ_G0018780.1 mouse_genomes_project 11 98532572 98536412 - MGP_C3HHeJ_P0031714 Tbkbp1 protein_coding protein_coding MGP_C3HHeJ_T0031619.1 MGP_C3HHeJ_G0018756.1 mouse_genomes_project 11 97612874 97617999 + MGP_C3HHeJ_P0031619 Hoxb9 protein_coding protein_coding MGP_C3HHeJ_T0031620.1 MGP_C3HHeJ_G0018756.1 mouse_genomes_project 11 97612940 97617999 + MGP_C3HHeJ_P0031620 Hoxb9 protein_coding protein_coding MGP_C3HHeJ_T0006119.1 MGP_C3HHeJ_G0005104.1 mouse_genomes_project 11 22058028 22160238 + 4933430M04Rik lincRNA lincRNA MGP_C3HHeJ_T0030004.1 MGP_C3HHeJ_G0018350.1 mouse_genomes_project 11 70371901 70372824 + MGP_C3HHeJ_P0030004 Zmynd15 protein_coding protein_coding MGP_C3HHeJ_T0030005.1 MGP_C3HHeJ_G0018350.1 mouse_genomes_project 11 70372098 70372858 + MGP_C3HHeJ_P0030005 Zmynd15 protein_coding protein_coding MGP_C3HHeJ_T0030006.1 MGP_C3HHeJ_G0018350.1 mouse_genomes_project 11 70372157 70378161 + Zmynd15 protein_coding retained_intron MGP_C3HHeJ_T0030007.1 MGP_C3HHeJ_G0018350.1 mouse_genomes_project 11 70372526 70378052 + MGP_C3HHeJ_P0030007 Zmynd15 protein_coding protein_coding MGP_C3HHeJ_T0030008.1 MGP_C3HHeJ_G0018350.1 mouse_genomes_project 11 70372531 70378048 + MGP_C3HHeJ_P0030008 Zmynd15 protein_coding protein_coding MGP_C3HHeJ_T0016953.1 MGP_C3HHeJ_G0014922.1 mouse_genomes_project 11 26933775 26936470 - A630052C17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0006158.1 MGP_C3HHeJ_G0005136.1 mouse_genomes_project 11 45110708 45120306 - Gm4926 lincRNA lincRNA MGP_C3HHeJ_T0030608.1 MGP_C3HHeJ_G0018501.1 mouse_genomes_project 11 77752848 77767020 + MGP_C3HHeJ_P0030608 Git1 protein_coding protein_coding MGP_C3HHeJ_T0030609.1 MGP_C3HHeJ_G0018501.1 mouse_genomes_project 11 77752857 77767020 + MGP_C3HHeJ_P0030609 Git1 protein_coding protein_coding MGP_C3HHeJ_T0030610.1 MGP_C3HHeJ_G0018501.1 mouse_genomes_project 11 77758324 77762349 + Git1 protein_coding retained_intron MGP_C3HHeJ_T0030611.1 MGP_C3HHeJ_G0018501.1 mouse_genomes_project 11 77760221 77764319 + Git1 protein_coding retained_intron MGP_C3HHeJ_T0030612.1 MGP_C3HHeJ_G0018501.1 mouse_genomes_project 11 77761712 77764066 + Git1 protein_coding retained_intron MGP_C3HHeJ_T0030613.1 MGP_C3HHeJ_G0018501.1 mouse_genomes_project 11 77764369 77765273 + Git1 protein_coding retained_intron MGP_C3HHeJ_T0006160.1 MGP_C3HHeJ_G0005138.1 mouse_genomes_project 11 49934907 49947762 + lincRNA lincRNA MGP_C3HHeJ_T0031209.1 MGP_C3HHeJ_G0018651.1 mouse_genomes_project 11 87771507 87813010 - MGP_C3HHeJ_P0031209 Gdpd1 protein_coding protein_coding MGP_C3HHeJ_T0098351.1 MGP_C3HHeJ_G0036561.1 mouse_genomes_project 11 98932150 98934434 - Gm11611 sense_intronic sense_intronic MGP_C3HHeJ_T0009590.1 MGP_C3HHeJ_G0007723.1 mouse_genomes_project 11 49022858 49022920 + Mir6919 miRNA miRNA MGP_C3HHeJ_T0030001.1 MGP_C3HHeJ_G0018349.1 mouse_genomes_project 11 70365165 70371946 - MGP_C3HHeJ_P0030001 Cxcl16 protein_coding protein_coding MGP_C3HHeJ_T0030002.1 MGP_C3HHeJ_G0018349.1 mouse_genomes_project 11 70365420 70371370 - MGP_C3HHeJ_P0030002 Cxcl16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030003.1 MGP_C3HHeJ_G0018349.1 mouse_genomes_project 11 70367173 70371794 - Cxcl16 protein_coding retained_intron MGP_C3HHeJ_T0027463.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 391362 413091 - Smtn protein_coding processed_transcript MGP_C3HHeJ_T0027464.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 391362 413078 - MGP_C3HHeJ_P0027464 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027465.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 391362 401776 - MGP_C3HHeJ_P0027465 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027466.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 391362 411237 - MGP_C3HHeJ_P0027466 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027467.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 391362 413131 - MGP_C3HHeJ_P0027467 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027468.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 391362 413131 - MGP_C3HHeJ_P0027468 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027469.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 394377 396393 - Smtn protein_coding processed_transcript MGP_C3HHeJ_T0027470.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 406298 414451 - MGP_C3HHeJ_P0027470 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027471.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 406441 413090 - MGP_C3HHeJ_P0027471 Smtn protein_coding protein_coding MGP_C3HHeJ_T0027472.1 MGP_C3HHeJ_G0017715.1 mouse_genomes_project 11 408652 413088 - Smtn protein_coding processed_transcript MGP_C3HHeJ_T0003168.1 MGP_C3HHeJ_G0002937.1 mouse_genomes_project 11 80066647 80071359 - Rab11fip4os2 antisense antisense MGP_C3HHeJ_T0003169.1 MGP_C3HHeJ_G0002937.1 mouse_genomes_project 11 80070142 80071404 - Rab11fip4os2 antisense antisense MGP_C3HHeJ_T0012625.1 MGP_C3HHeJ_G0010729.1 mouse_genomes_project 11 106458336 106458748 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098768.1 MGP_C3HHeJ_G0036962.1 mouse_genomes_project 11 37011206 37011313 - Gm23520 snRNA snRNA MGP_C3HHeJ_T0029193.1 MGP_C3HHeJ_G0018170.1 mouse_genomes_project 11 59820605 59858396 + MGP_C3HHeJ_P0029193 Gid4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029194.1 MGP_C3HHeJ_G0018170.1 mouse_genomes_project 11 59820722 59850112 + MGP_C3HHeJ_P0029194 Gid4 protein_coding protein_coding MGP_C3HHeJ_T0012602.1 MGP_C3HHeJ_G0010706.1 mouse_genomes_project 11 98158675 98159062 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031233.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88357200 88374163 + MGP_C3HHeJ_P0031233 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031234.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366697 88380662 + MGP_C3HHeJ_P0031234 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031235.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366708 88379309 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031236.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366720 88380660 + MGP_C3HHeJ_P0031236 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031237.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366743 88380662 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031238.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366752 88374953 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031239.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366766 88380662 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031240.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88366780 88374781 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031241.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88367224 88379397 + MGP_C3HHeJ_P0031241 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031242.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88369295 88380662 + MGP_C3HHeJ_P0031242 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031243.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88369315 88380662 + MGP_C3HHeJ_P0031243 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031244.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88369315 88380498 + MGP_C3HHeJ_P0031244 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031245.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88369323 88374953 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031246.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88369328 88380662 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031247.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88370463 88379164 + MGP_C3HHeJ_P0031247 Sept4 protein_coding protein_coding MGP_C3HHeJ_T0031248.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88374146 88379987 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031249.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88378448 88380668 + MGP_C3HHeJ_P0031249 Sept4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031250.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88378990 88380117 + Sept4 protein_coding retained_intron MGP_C3HHeJ_T0031251.1 MGP_C3HHeJ_G0018660.1 mouse_genomes_project 11 88379599 88380662 + Sept4 protein_coding processed_transcript MGP_C3HHeJ_T0032799.1 MGP_C3HHeJ_G0019058.1 mouse_genomes_project 11 108418823 108423935 - MGP_C3HHeJ_P0032799 Icam2 protein_coding protein_coding MGP_C3HHeJ_T0032800.1 MGP_C3HHeJ_G0019058.1 mouse_genomes_project 11 108419729 108421955 - MGP_C3HHeJ_P0032800 Icam2 protein_coding protein_coding MGP_C3HHeJ_T0032801.1 MGP_C3HHeJ_G0019058.1 mouse_genomes_project 11 108419975 108431159 - MGP_C3HHeJ_P0032801 Icam2 protein_coding protein_coding MGP_C3HHeJ_T0032802.1 MGP_C3HHeJ_G0019058.1 mouse_genomes_project 11 108421841 108431162 - MGP_C3HHeJ_P0032802 Icam2 protein_coding protein_coding MGP_C3HHeJ_T0032803.1 MGP_C3HHeJ_G0019058.1 mouse_genomes_project 11 108422198 108424150 - Icam2 protein_coding retained_intron MGP_C3HHeJ_T0031616.1 MGP_C3HHeJ_G0018754.1 mouse_genomes_project 11 97457473 97492384 + MGP_C3HHeJ_P0031616 Ttll6 protein_coding protein_coding MGP_C3HHeJ_T0031617.1 MGP_C3HHeJ_G0018754.1 mouse_genomes_project 11 97466615 97499865 + MGP_C3HHeJ_P0031617 Ttll6 protein_coding protein_coding MGP_C3HHeJ_T0031756.1 MGP_C3HHeJ_G0018789.1 mouse_genomes_project 11 99042321 99044635 - MGP_C3HHeJ_P0031756 E130012A19Rik protein_coding protein_coding MGP_C3HHeJ_T0031900.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100210124 100234890 - Med24 protein_coding retained_intron MGP_C3HHeJ_T0031901.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100210124 100235491 - MGP_C3HHeJ_P0031901 Med24 protein_coding protein_coding MGP_C3HHeJ_T0031902.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100210376 100212014 - Med24 protein_coding retained_intron MGP_C3HHeJ_T0031903.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100210433 100235466 - MGP_C3HHeJ_P0031903 Med24 protein_coding protein_coding MGP_C3HHeJ_T0031904.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100210433 100235423 - MGP_C3HHeJ_P0031904 Med24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031905.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100211960 100212785 - Med24 protein_coding retained_intron MGP_C3HHeJ_T0031906.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100212799 100213537 - Med24 protein_coding processed_transcript MGP_C3HHeJ_T0031907.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100214375 100235474 - Med24 protein_coding retained_intron MGP_C3HHeJ_T0031908.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100215179 100216600 - Med24 protein_coding retained_intron MGP_C3HHeJ_T0031909.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100223977 100224878 - Med24 protein_coding processed_transcript MGP_C3HHeJ_T0031910.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100224618 100235430 - MGP_C3HHeJ_P0031910 Med24 protein_coding protein_coding MGP_C3HHeJ_T0031911.1 MGP_C3HHeJ_G0018825.1 mouse_genomes_project 11 100224705 100235459 - Med24 protein_coding retained_intron MGP_C3HHeJ_T0009687.1 MGP_C3HHeJ_G0007820.1 mouse_genomes_project 11 122817264 122817351 + Mir3065 miRNA miRNA MGP_C3HHeJ_T0030711.1 MGP_C3HHeJ_G0018520.1 mouse_genomes_project 11 78485914 78488060 - Rpl23a protein_coding retained_intron MGP_C3HHeJ_T0030712.1 MGP_C3HHeJ_G0018520.1 mouse_genomes_project 11 78485917 78486613 - Rpl23a protein_coding retained_intron MGP_C3HHeJ_T0030713.1 MGP_C3HHeJ_G0018520.1 mouse_genomes_project 11 78485917 78488567 - MGP_C3HHeJ_P0030713 Rpl23a protein_coding protein_coding MGP_C3HHeJ_T0012666.1 MGP_C3HHeJ_G0010770.1 mouse_genomes_project 11 124789082 124789509 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012593.1 MGP_C3HHeJ_G0010697.1 mouse_genomes_project 11 92884110 92885059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032439.1 MGP_C3HHeJ_G0018981.1 mouse_genomes_project 11 104130792 104134938 - Atxn7l3 protein_coding retained_intron MGP_C3HHeJ_T0032440.1 MGP_C3HHeJ_G0018981.1 mouse_genomes_project 11 104130792 104137761 - MGP_C3HHeJ_P0032440 Atxn7l3 protein_coding protein_coding MGP_C3HHeJ_T0032441.1 MGP_C3HHeJ_G0018981.1 mouse_genomes_project 11 104130792 104140341 - MGP_C3HHeJ_P0032441 Atxn7l3 protein_coding protein_coding MGP_C3HHeJ_T0032442.1 MGP_C3HHeJ_G0018981.1 mouse_genomes_project 11 104130792 104137436 - MGP_C3HHeJ_P0032442 Atxn7l3 protein_coding protein_coding MGP_C3HHeJ_T0032443.1 MGP_C3HHeJ_G0018981.1 mouse_genomes_project 11 104130792 104136612 - MGP_C3HHeJ_P0032443 Atxn7l3 protein_coding protein_coding MGP_C3HHeJ_T0032444.1 MGP_C3HHeJ_G0018981.1 mouse_genomes_project 11 104130793 104140339 - MGP_C3HHeJ_P0032444 Atxn7l3 protein_coding protein_coding MGP_C3HHeJ_T0033394.1 MGP_C3HHeJ_G0019175.1 mouse_genomes_project 11 119057918 119066410 + MGP_C3HHeJ_P0033394 Ubald2 protein_coding protein_coding MGP_C3HHeJ_T0033396.1 MGP_C3HHeJ_G0019175.1 mouse_genomes_project 11 119059389 119065552 + Ubald2 protein_coding processed_transcript MGP_C3HHeJ_T0030589.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77468888 77653096 + MGP_C3HHeJ_P0030589 Ssh2 protein_coding protein_coding MGP_C3HHeJ_T0030590.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77468888 77719531 + MGP_C3HHeJ_P0030590 Ssh2 protein_coding protein_coding MGP_C3HHeJ_T0030591.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77603192 77608797 + Ssh2 protein_coding retained_intron MGP_C3HHeJ_T0030592.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77606888 77674626 + Ssh2 protein_coding processed_transcript MGP_C3HHeJ_T0030593.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77606890 77714846 + MGP_C3HHeJ_P0030593 Ssh2 protein_coding protein_coding MGP_C3HHeJ_T0030594.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77606896 77693629 + Ssh2 protein_coding retained_intron MGP_C3HHeJ_T0030595.1 MGP_C3HHeJ_G0018498.1 mouse_genomes_project 11 77651379 77653946 + Ssh2 protein_coding retained_intron MGP_C3HHeJ_T0017024.1 MGP_C3HHeJ_G0014961.1 mouse_genomes_project 11 98425123 98427867 - Gm11574 processed_transcript processed_transcript MGP_C3HHeJ_T0100050.1 MGP_C3HHeJ_G0038244.1 mouse_genomes_project 11 108552640 108552710 + Snord104 snoRNA snoRNA MGP_C3HHeJ_T0028344.1 MGP_C3HHeJ_G0017922.1 mouse_genomes_project 11 40765681 40980997 + MGP_C3HHeJ_P0028344 Gabrb2 protein_coding protein_coding MGP_C3HHeJ_T0028345.1 MGP_C3HHeJ_G0017922.1 mouse_genomes_project 11 40765688 40769537 + Gabrb2 protein_coding processed_transcript MGP_C3HHeJ_T0028346.1 MGP_C3HHeJ_G0017922.1 mouse_genomes_project 11 40768177 40834925 + Gabrb2 protein_coding processed_transcript MGP_C3HHeJ_T0028347.1 MGP_C3HHeJ_G0017922.1 mouse_genomes_project 11 40768208 40881252 + Gabrb2 protein_coding processed_transcript MGP_C3HHeJ_T0028348.1 MGP_C3HHeJ_G0017922.1 mouse_genomes_project 11 40768248 40978860 + MGP_C3HHeJ_P0028348 Gabrb2 protein_coding protein_coding MGP_C3HHeJ_T0032579.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004302 105014823 + MGP_C3HHeJ_P0032579 Acbd4 protein_coding protein_coding MGP_C3HHeJ_T0032580.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004302 105014826 + MGP_C3HHeJ_P0032580 Acbd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032581.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004306 105006642 + Acbd4 protein_coding processed_transcript MGP_C3HHeJ_T0032582.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004306 105008018 + MGP_C3HHeJ_P0032582 Acbd4 protein_coding protein_coding MGP_C3HHeJ_T0032583.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004308 105014825 + MGP_C3HHeJ_P0032583 Acbd4 protein_coding protein_coding MGP_C3HHeJ_T0032584.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004329 105006006 + Acbd4 protein_coding retained_intron MGP_C3HHeJ_T0032585.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004332 105006800 + MGP_C3HHeJ_P0032585 Acbd4 protein_coding protein_coding MGP_C3HHeJ_T0032586.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105004346 105005844 + Acbd4 protein_coding retained_intron MGP_C3HHeJ_T0032587.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105005641 105008092 + MGP_C3HHeJ_P0032587 Acbd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032588.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105005694 105008077 + Acbd4 protein_coding processed_transcript MGP_C3HHeJ_T0032589.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105005696 105007472 + MGP_C3HHeJ_P0032589 Acbd4 protein_coding protein_coding MGP_C3HHeJ_T0032590.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105005728 105006719 + Acbd4 protein_coding retained_intron MGP_C3HHeJ_T0032591.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105005872 105007108 + Acbd4 protein_coding retained_intron MGP_C3HHeJ_T0032592.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105007330 105014579 + Acbd4 protein_coding retained_intron MGP_C3HHeJ_T0032593.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105008808 105014365 + Acbd4 protein_coding processed_transcript MGP_C3HHeJ_T0032594.1 MGP_C3HHeJ_G0019006.1 mouse_genomes_project 11 105008829 105014823 + Acbd4 protein_coding processed_transcript MGP_C3HHeJ_T0032030.1 MGP_C3HHeJ_G0018886.1 mouse_genomes_project 11 101666154 101673189 - MGP_C3HHeJ_P0032030 Krt33b protein_coding protein_coding MGP_C3HHeJ_T0030898.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862295 80875056 + Psmd11 protein_coding retained_intron MGP_C3HHeJ_T0030899.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862317 80924231 + MGP_C3HHeJ_P0030899 Psmd11 protein_coding protein_coding MGP_C3HHeJ_T0030900.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862324 80923575 + Psmd11 protein_coding retained_intron MGP_C3HHeJ_T0030901.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862326 80886459 + MGP_C3HHeJ_P0030901 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030902.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862345 80902375 + MGP_C3HHeJ_P0030902 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030903.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862366 80896739 + MGP_C3HHeJ_P0030903 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030904.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862366 80922808 + MGP_C3HHeJ_P0030904 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030905.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862366 80919051 + MGP_C3HHeJ_P0030905 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030906.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80862370 80898120 + MGP_C3HHeJ_P0030906 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030907.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80866357 80898124 + MGP_C3HHeJ_P0030907 Psmd11 protein_coding protein_coding MGP_C3HHeJ_T0030908.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80898064 80923144 + MGP_C3HHeJ_P0030908 Psmd11 protein_coding protein_coding MGP_C3HHeJ_T0030909.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80902392 80922983 + MGP_C3HHeJ_P0030909 Psmd11 protein_coding protein_coding MGP_C3HHeJ_T0030910.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80904294 80924451 + MGP_C3HHeJ_P0030910 Psmd11 protein_coding protein_coding MGP_C3HHeJ_T0030911.1 MGP_C3HHeJ_G0018567.1 mouse_genomes_project 11 80904298 80922910 + MGP_C3HHeJ_P0030911 Psmd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098798.1 MGP_C3HHeJ_G0036992.1 mouse_genomes_project 11 84117732 84117839 + Gm23247 snRNA snRNA MGP_C3HHeJ_T0098570.1 MGP_C3HHeJ_G0036768.1 mouse_genomes_project 11 99749927 99751919 + Gm20644 sense_overlapping sense_overlapping MGP_C3HHeJ_T0098775.1 MGP_C3HHeJ_G0036969.1 mouse_genomes_project 11 53943599 53943769 + Gm23021 snRNA snRNA MGP_C3HHeJ_T0012576.1 MGP_C3HHeJ_G0010680.1 mouse_genomes_project 11 85752975 85753502 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031757.1 MGP_C3HHeJ_G0018790.1 mouse_genomes_project 11 99080785 99106465 + MGP_C3HHeJ_P0031757 Mllt6 protein_coding protein_coding MGP_C3HHeJ_T0031758.1 MGP_C3HHeJ_G0018790.1 mouse_genomes_project 11 99080785 99106465 + MGP_C3HHeJ_P0031758 Mllt6 protein_coding protein_coding MGP_C3HHeJ_T0031759.1 MGP_C3HHeJ_G0018790.1 mouse_genomes_project 11 99084510 99103495 + Mllt6 protein_coding processed_transcript MGP_C3HHeJ_T0031760.1 MGP_C3HHeJ_G0018790.1 mouse_genomes_project 11 99084556 99093106 + Mllt6 protein_coding processed_transcript MGP_C3HHeJ_T0031761.1 MGP_C3HHeJ_G0018790.1 mouse_genomes_project 11 99095609 99097927 + Mllt6 protein_coding processed_transcript MGP_C3HHeJ_T0031762.1 MGP_C3HHeJ_G0018790.1 mouse_genomes_project 11 99095609 99097927 + Mllt6 protein_coding processed_transcript MGP_C3HHeJ_T0098783.1 MGP_C3HHeJ_G0036977.1 mouse_genomes_project 11 68885611 68885712 + Gm25371 snRNA snRNA MGP_C3HHeJ_T0101652.1 MGP_C3HHeJ_G0039618.1 mouse_genomes_project 11 95814541 95816180 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009679.1 MGP_C3HHeJ_G0007812.1 mouse_genomes_project 11 118390407 118390470 + Mir5621 miRNA miRNA MGP_C3HHeJ_T0003092.1 MGP_C3HHeJ_G0002873.1 mouse_genomes_project 11 51191318 51194208 + Gm12207 antisense antisense MGP_C3HHeJ_T0033763.1 MGP_C3HHeJ_G0019249.1 mouse_genomes_project 11 123280959 123287710 - Pde6g protein_coding processed_transcript MGP_C3HHeJ_T0033764.1 MGP_C3HHeJ_G0019249.1 mouse_genomes_project 11 123280978 123287728 - Pde6g protein_coding processed_transcript MGP_C3HHeJ_T0033765.1 MGP_C3HHeJ_G0019249.1 mouse_genomes_project 11 123280980 123287776 - MGP_C3HHeJ_P0033765 Pde6g protein_coding protein_coding MGP_C3HHeJ_T0101644.1 MGP_C3HHeJ_G0039610.1 mouse_genomes_project 11 74193975 74199926 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012544.1 MGP_C3HHeJ_G0010648.1 mouse_genomes_project 11 73259205 73259424 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003238.1 MGP_C3HHeJ_G0002990.1 mouse_genomes_project 11 104227551 104229023 - Bloodlinc antisense antisense MGP_C3HHeJ_T0033131.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117910240 117930233 - MGP_C3HHeJ_P0033131 Hid1 protein_coding protein_coding MGP_C3HHeJ_T0033132.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117910240 117930270 - MGP_C3HHeJ_P0033132 Hid1 protein_coding protein_coding MGP_C3HHeJ_T0033133.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117911542 117913535 - Hid1 protein_coding processed_transcript MGP_C3HHeJ_T0033134.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117916644 117917906 - Hid1 protein_coding processed_transcript MGP_C3HHeJ_T0033135.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117917891 117930181 - MGP_C3HHeJ_P0033135 Hid1 protein_coding protein_coding MGP_C3HHeJ_T0033136.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117919220 117922833 - Hid1 protein_coding processed_transcript MGP_C3HHeJ_T0033137.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117919315 117930123 - Hid1 protein_coding processed_transcript MGP_C3HHeJ_T0033138.1 MGP_C3HHeJ_G0019131.1 mouse_genomes_project 11 117921195 117921836 - Hid1 protein_coding processed_transcript MGP_C3HHeJ_T0030988.1 MGP_C3HHeJ_G0018597.1 mouse_genomes_project 11 83856736 83868726 - MGP_C3HHeJ_P0030988 Slfn14 protein_coding protein_coding MGP_C3HHeJ_T0016916.1 MGP_C3HHeJ_G0014907.1 mouse_genomes_project 11 319672 324373 + 8430429K09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016917.1 MGP_C3HHeJ_G0014907.1 mouse_genomes_project 11 319744 324237 + 8430429K09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016918.1 MGP_C3HHeJ_G0014907.1 mouse_genomes_project 11 319779 325612 + 8430429K09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016919.1 MGP_C3HHeJ_G0014907.1 mouse_genomes_project 11 319779 348756 + 8430429K09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016920.1 MGP_C3HHeJ_G0014907.1 mouse_genomes_project 11 319787 324290 + 8430429K09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0011213.1 MGP_C3HHeJ_G0009346.1 mouse_genomes_project 11 85988669 85988965 - Gm22587 misc_RNA misc_RNA MGP_C3HHeJ_T0012481.1 MGP_C3HHeJ_G0010585.1 mouse_genomes_project 11 51367700 51367863 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009672.1 MGP_C3HHeJ_G0007805.1 mouse_genomes_project 11 108853139 108853206 - Mir3064 miRNA miRNA MGP_C3HHeJ_T0033616.1 MGP_C3HHeJ_G0019221.1 mouse_genomes_project 11 121789594 121797906 + MGP_C3HHeJ_P0033616 Cbx2 protein_coding protein_coding MGP_C3HHeJ_T0033617.1 MGP_C3HHeJ_G0019221.1 mouse_genomes_project 11 121790357 121794674 + Cbx2 protein_coding processed_transcript MGP_C3HHeJ_T0031101.1 MGP_C3HHeJ_G0018628.1 mouse_genomes_project 11 85555075 85558952 - MGP_C3HHeJ_P0031101 Pigw protein_coding protein_coding MGP_C3HHeJ_T0031102.1 MGP_C3HHeJ_G0018628.1 mouse_genomes_project 11 85555603 85559042 - MGP_C3HHeJ_P0031102 Pigw protein_coding protein_coding MGP_C3HHeJ_T0029610.1 MGP_C3HHeJ_G0018263.1 mouse_genomes_project 11 68772808 68777675 + MGP_C3HHeJ_P0029610 Slc25a35 protein_coding protein_coding MGP_C3HHeJ_T0029611.1 MGP_C3HHeJ_G0018263.1 mouse_genomes_project 11 68772824 68776941 + Slc25a35 protein_coding processed_transcript MGP_C3HHeJ_T0029612.1 MGP_C3HHeJ_G0018263.1 mouse_genomes_project 11 68772825 68780823 + MGP_C3HHeJ_P0029612 Slc25a35 protein_coding protein_coding MGP_C3HHeJ_T0030306.1 MGP_C3HHeJ_G0018417.1 mouse_genomes_project 11 73434803 73439223 - MGP_C3HHeJ_P0030306 Olfr1 protein_coding protein_coding MGP_C3HHeJ_T0030307.1 MGP_C3HHeJ_G0018417.1 mouse_genomes_project 11 73435159 73439223 - MGP_C3HHeJ_P0030307 Olfr1 protein_coding protein_coding MGP_C3HHeJ_T0100039.1 MGP_C3HHeJ_G0038233.1 mouse_genomes_project 11 83954250 83954382 - Gm23951 snoRNA snoRNA MGP_C3HHeJ_T0009627.1 MGP_C3HHeJ_G0007760.1 mouse_genomes_project 11 75314249 75314315 + Mir132 miRNA miRNA MGP_C3HHeJ_T0032981.1 MGP_C3HHeJ_G0019093.1 mouse_genomes_project 11 112341790 112409523 - MGP_C3HHeJ_P0032981 Abca9 protein_coding protein_coding MGP_C3HHeJ_T0032982.1 MGP_C3HHeJ_G0019093.1 mouse_genomes_project 11 112397743 112409382 - Abca9 protein_coding processed_transcript MGP_C3HHeJ_T0009657.1 MGP_C3HHeJ_G0007790.1 mouse_genomes_project 11 99482323 99482403 + Gm27597 miRNA miRNA MGP_C3HHeJ_T0009564.1 MGP_C3HHeJ_G0007697.1 mouse_genomes_project 11 1820865 1820923 + Mir6918 miRNA miRNA MGP_C3HHeJ_T0033676.1 MGP_C3HHeJ_G0019233.1 mouse_genomes_project 11 122333924 122342991 - MGP_C3HHeJ_P0033676 Nptx1 protein_coding protein_coding MGP_C3HHeJ_T0028636.1 MGP_C3HHeJ_G0018004.1 mouse_genomes_project 11 49630307 49638320 - MGP_C3HHeJ_P0028636 Zfp879 protein_coding protein_coding MGP_C3HHeJ_T0030450.1 MGP_C3HHeJ_G0018469.1 mouse_genomes_project 11 75669788 75682430 + MGP_C3HHeJ_P0030450 Scarf1 protein_coding protein_coding MGP_C3HHeJ_T0030451.1 MGP_C3HHeJ_G0018469.1 mouse_genomes_project 11 75669823 75682426 + MGP_C3HHeJ_P0030451 Scarf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030452.1 MGP_C3HHeJ_G0018469.1 mouse_genomes_project 11 75669826 75682044 + MGP_C3HHeJ_P0030452 Scarf1 protein_coding protein_coding MGP_C3HHeJ_T0029370.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61866544 62024058 - MGP_C3HHeJ_P0029370 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029371.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61866544 62000673 - MGP_C3HHeJ_P0029371 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029372.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61868204 61936318 - MGP_C3HHeJ_P0029372 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029373.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61869115 61873459 - MGP_C3HHeJ_P0029373 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029374.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61869311 62000639 - MGP_C3HHeJ_P0029374 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029375.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61869311 61910481 - MGP_C3HHeJ_P0029375 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029376.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61869311 61911257 - MGP_C3HHeJ_P0029376 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029377.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61877316 61882088 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029378.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61877566 61882212 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029379.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61879185 61882987 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029380.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61892498 61896374 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029381.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61895064 61902861 - Ncor1 protein_coding processed_transcript MGP_C3HHeJ_T0029382.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61896257 61950457 - MGP_C3HHeJ_P0029382 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029383.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61905376 61925441 - Ncor1 protein_coding processed_transcript MGP_C3HHeJ_T0029384.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61923120 62000673 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029385.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61929434 61941006 - MGP_C3HHeJ_P0029385 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029386.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61929479 61942641 - MGP_C3HHeJ_P0029386 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029387.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61929499 61941155 - MGP_C3HHeJ_P0029387 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029388.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61929501 62024532 - MGP_C3HHeJ_P0029388 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029389.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61932731 61941064 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029390.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61942554 62000673 - MGP_C3HHeJ_P0029390 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029391.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61949846 61952990 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029392.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61952983 61959348 - Ncor1 protein_coding retained_intron MGP_C3HHeJ_T0029393.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61959180 62024049 - MGP_C3HHeJ_P0029393 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0029394.1 MGP_C3HHeJ_G0018206.1 mouse_genomes_project 11 61978379 62025267 - MGP_C3HHeJ_P0029394 Ncor1 protein_coding protein_coding MGP_C3HHeJ_T0031310.1 MGP_C3HHeJ_G0018675.1 mouse_genomes_project 11 88915547 88932012 + MGP_C3HHeJ_P0031310 Vezf1 protein_coding protein_coding MGP_C3HHeJ_T0031311.1 MGP_C3HHeJ_G0018675.1 mouse_genomes_project 11 88920863 88932012 + MGP_C3HHeJ_P0031311 Vezf1 protein_coding protein_coding MGP_C3HHeJ_T0027934.1 MGP_C3HHeJ_G0017825.1 mouse_genomes_project 11 18545017 18597888 + Peli1 protein_coding retained_intron MGP_C3HHeJ_T0027935.1 MGP_C3HHeJ_G0017825.1 mouse_genomes_project 11 18545017 18605326 + MGP_C3HHeJ_P0027935 Peli1 protein_coding protein_coding MGP_C3HHeJ_T0027936.1 MGP_C3HHeJ_G0017825.1 mouse_genomes_project 11 18545844 18604405 + Peli1 protein_coding retained_intron MGP_C3HHeJ_T0027937.1 MGP_C3HHeJ_G0017825.1 mouse_genomes_project 11 18588598 18605326 + MGP_C3HHeJ_P0027937 Peli1 protein_coding protein_coding MGP_C3HHeJ_T0012613.1 MGP_C3HHeJ_G0010717.1 mouse_genomes_project 11 101629102 101629561 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031269.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88560571 88586772 + MGP_C3HHeJ_P0031269 Bzrap1 protein_coding protein_coding MGP_C3HHeJ_T0031270.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88560617 88586772 + MGP_C3HHeJ_P0031270 Bzrap1 protein_coding protein_coding MGP_C3HHeJ_T0031271.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88565603 88567268 + Bzrap1 protein_coding processed_transcript MGP_C3HHeJ_T0031272.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88576953 88580362 + MGP_C3HHeJ_P0031272 Bzrap1 protein_coding protein_coding MGP_C3HHeJ_T0031273.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88577360 88586772 + MGP_C3HHeJ_P0031273 Bzrap1 protein_coding protein_coding MGP_C3HHeJ_T0031274.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88577918 88586772 + Bzrap1 protein_coding retained_intron MGP_C3HHeJ_T0031275.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88579616 88586772 + Bzrap1 protein_coding retained_intron MGP_C3HHeJ_T0031276.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88579775 88581113 + Bzrap1 protein_coding retained_intron MGP_C3HHeJ_T0031277.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88581119 88585585 + MGP_C3HHeJ_P0031277 Bzrap1 protein_coding protein_coding MGP_C3HHeJ_T0031278.1 MGP_C3HHeJ_G0018665.1 mouse_genomes_project 11 88582400 88584038 + Bzrap1 protein_coding retained_intron MGP_C3HHeJ_T0012566.1 MGP_C3HHeJ_G0010670.1 mouse_genomes_project 11 79837340 79837848 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012450.1 MGP_C3HHeJ_G0010554.1 mouse_genomes_project 11 36411991 36413174 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030178.1 MGP_C3HHeJ_G0018382.1 mouse_genomes_project 11 72025124 72117752 - MGP_C3HHeJ_P0030178 Pitpnm3 protein_coding protein_coding MGP_C3HHeJ_T0030179.1 MGP_C3HHeJ_G0018382.1 mouse_genomes_project 11 72025124 72117695 - MGP_C3HHeJ_P0030179 Pitpnm3 protein_coding protein_coding MGP_C3HHeJ_T0030180.1 MGP_C3HHeJ_G0018382.1 mouse_genomes_project 11 72028705 72029646 - Pitpnm3 protein_coding processed_transcript MGP_C3HHeJ_T0030181.1 MGP_C3HHeJ_G0018382.1 mouse_genomes_project 11 72035213 72039130 - Pitpnm3 protein_coding retained_intron MGP_C3HHeJ_T0030182.1 MGP_C3HHeJ_G0018382.1 mouse_genomes_project 11 72045368 72117752 - Pitpnm3 protein_coding retained_intron MGP_C3HHeJ_T0101649.1 MGP_C3HHeJ_G0039615.1 mouse_genomes_project 11 84295547 84296391 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029263.1 MGP_C3HHeJ_G0018187.1 mouse_genomes_project 11 60716837 60721634 + MGP_C3HHeJ_P0029263 Aldh3a1 protein_coding protein_coding MGP_C3HHeJ_T0029264.1 MGP_C3HHeJ_G0018187.1 mouse_genomes_project 11 60717921 60727722 + MGP_C3HHeJ_P0029264 Aldh3a1 protein_coding protein_coding MGP_C3HHeJ_T0029265.1 MGP_C3HHeJ_G0018187.1 mouse_genomes_project 11 60718045 60727722 + MGP_C3HHeJ_P0029265 Aldh3a1 protein_coding protein_coding MGP_C3HHeJ_T0009580.1 MGP_C3HHeJ_G0007713.1 mouse_genomes_project 11 33676159 33676269 + Mir218-2 miRNA miRNA MGP_C3HHeJ_T0098784.1 MGP_C3HHeJ_G0036978.1 mouse_genomes_project 11 69058388 69058493 + Gm23194 snRNA snRNA MGP_C3HHeJ_T0030173.1 MGP_C3HHeJ_G0018381.1 mouse_genomes_project 11 72019628 72020879 + MGP_C3HHeJ_P0030173 Fam64a protein_coding protein_coding MGP_C3HHeJ_T0030174.1 MGP_C3HHeJ_G0018381.1 mouse_genomes_project 11 72020051 72024967 + MGP_C3HHeJ_P0030174 Fam64a protein_coding protein_coding MGP_C3HHeJ_T0030175.1 MGP_C3HHeJ_G0018381.1 mouse_genomes_project 11 72020098 72021261 + Fam64a protein_coding processed_transcript MGP_C3HHeJ_T0030176.1 MGP_C3HHeJ_G0018381.1 mouse_genomes_project 11 72020120 72023690 + Fam64a protein_coding processed_transcript MGP_C3HHeJ_T0030177.1 MGP_C3HHeJ_G0018381.1 mouse_genomes_project 11 72020518 72022637 + MGP_C3HHeJ_P0030177 Fam64a protein_coding protein_coding MGP_C3HHeJ_T0031339.1 MGP_C3HHeJ_G0018682.1 mouse_genomes_project 11 89869135 89871425 - MGP_C3HHeJ_P0031339 Gm15698 protein_coding protein_coding MGP_C3HHeJ_T0033561.1 MGP_C3HHeJ_G0019210.1 mouse_genomes_project 11 120749249 120861715 - MGP_C3HHeJ_P0033561 Dnah17 protein_coding protein_coding MGP_C3HHeJ_T0033562.1 MGP_C3HHeJ_G0019210.1 mouse_genomes_project 11 120749249 120861715 - MGP_C3HHeJ_P0033562 Dnah17 protein_coding protein_coding MGP_C3HHeJ_T0033563.1 MGP_C3HHeJ_G0019210.1 mouse_genomes_project 11 120750606 120834508 - MGP_C3HHeJ_P0033563 Dnah17 protein_coding protein_coding MGP_C3HHeJ_T0033564.1 MGP_C3HHeJ_G0019210.1 mouse_genomes_project 11 120817227 120823855 - MGP_C3HHeJ_P0033564 Dnah17 protein_coding protein_coding MGP_C3HHeJ_T0033565.1 MGP_C3HHeJ_G0019210.1 mouse_genomes_project 11 120843458 120858184 - MGP_C3HHeJ_P0033565 Dnah17 protein_coding protein_coding MGP_C3HHeJ_T0012614.1 MGP_C3HHeJ_G0010718.1 mouse_genomes_project 11 101908930 101909281 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028453.1 MGP_C3HHeJ_G0017954.1 mouse_genomes_project 11 45109649 45171082 - MGP_C3HHeJ_P0028453 Timd2 protein_coding protein_coding MGP_C3HHeJ_T0028454.1 MGP_C3HHeJ_G0017954.1 mouse_genomes_project 11 45150743 45201747 - MGP_C3HHeJ_P0028454 Timd2 protein_coding protein_coding MGP_C3HHeJ_T0028455.1 MGP_C3HHeJ_G0017954.1 mouse_genomes_project 11 45150743 45183062 - MGP_C3HHeJ_P0028455 Timd2 protein_coding protein_coding MGP_C3HHeJ_T0028456.1 MGP_C3HHeJ_G0017954.1 mouse_genomes_project 11 45167760 45201749 - MGP_C3HHeJ_P0028456 Timd2 protein_coding protein_coding MGP_C3HHeJ_T0032025.1 MGP_C3HHeJ_G0018881.1 mouse_genomes_project 11 101588299 101589376 + MGP_C3HHeJ_P0032025 Krtap9-5 protein_coding protein_coding MGP_C3HHeJ_T0101651.1 MGP_C3HHeJ_G0039617.1 mouse_genomes_project 11 84314958 84315102 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0028595.1 MGP_C3HHeJ_G0017996.1 mouse_genomes_project 11 49027082 49029085 - MGP_C3HHeJ_P0028595 protein_coding protein_coding MGP_C3HHeJ_T0028596.1 MGP_C3HHeJ_G0017996.1 mouse_genomes_project 11 49027085 49029146 - MGP_C3HHeJ_P0028596 protein_coding protein_coding MGP_C3HHeJ_T0028597.1 MGP_C3HHeJ_G0017996.1 mouse_genomes_project 11 49027085 49029230 - MGP_C3HHeJ_P0028597 protein_coding protein_coding MGP_C3HHeJ_T0029004.1 MGP_C3HHeJ_G0018103.1 mouse_genomes_project 11 57647340 57659544 + MGP_C3HHeJ_P0029004 Lypd8 protein_coding protein_coding MGP_C3HHeJ_T0029005.1 MGP_C3HHeJ_G0018103.1 mouse_genomes_project 11 57647340 57659353 + MGP_C3HHeJ_P0029005 Lypd8 protein_coding protein_coding MGP_C3HHeJ_T0012400.1 MGP_C3HHeJ_G0010504.1 mouse_genomes_project 11 18176191 18176721 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100036.1 MGP_C3HHeJ_G0038230.1 mouse_genomes_project 11 78891125 78891216 - Gm22947 snoRNA snoRNA MGP_C3HHeJ_T0012488.1 MGP_C3HHeJ_G0010592.1 mouse_genomes_project 11 53054148 53054591 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009666.1 MGP_C3HHeJ_G0007799.1 mouse_genomes_project 11 104256351 104256419 - Mir6930 miRNA miRNA MGP_C3HHeJ_T0030765.1 MGP_C3HHeJ_G0018531.1 mouse_genomes_project 11 78675516 78705409 - MGP_C3HHeJ_P0030765 Foxn1 protein_coding protein_coding MGP_C3HHeJ_T0032200.1 MGP_C3HHeJ_G0018932.1 mouse_genomes_project 11 102820554 102844070 - Fam134c protein_coding processed_transcript MGP_C3HHeJ_T0032201.1 MGP_C3HHeJ_G0018932.1 mouse_genomes_project 11 102820745 102844070 - MGP_C3HHeJ_P0032201 Fam134c protein_coding protein_coding MGP_C3HHeJ_T0032202.1 MGP_C3HHeJ_G0018932.1 mouse_genomes_project 11 102820751 102843884 - MGP_C3HHeJ_P0032202 Fam134c protein_coding protein_coding MGP_C3HHeJ_T0032203.1 MGP_C3HHeJ_G0018932.1 mouse_genomes_project 11 102822232 102843942 - Fam134c protein_coding processed_transcript MGP_C3HHeJ_T0032204.1 MGP_C3HHeJ_G0018932.1 mouse_genomes_project 11 102822815 102844070 - Fam134c protein_coding processed_transcript MGP_C3HHeJ_T0009676.1 MGP_C3HHeJ_G0007809.1 mouse_genomes_project 11 110158420 110158489 + Mir7223 miRNA miRNA MGP_C3HHeJ_T0031972.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100750260 100772037 - MGP_C3HHeJ_P0031972 Smarce1 protein_coding protein_coding MGP_C3HHeJ_T0031973.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100753877 100771482 - MGP_C3HHeJ_P0031973 Smarce1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031974.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100753920 100771450 - MGP_C3HHeJ_P0031974 Smarce1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031975.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100760222 100761835 - Smarce1 protein_coding processed_transcript MGP_C3HHeJ_T0031976.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100760631 100771465 - Smarce1 protein_coding processed_transcript MGP_C3HHeJ_T0031977.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100760711 100771433 - Smarce1 protein_coding processed_transcript MGP_C3HHeJ_T0031978.1 MGP_C3HHeJ_G0018839.1 mouse_genomes_project 11 100766311 100771466 - Smarce1 protein_coding processed_transcript MGP_C3HHeJ_T0030341.1 MGP_C3HHeJ_G0018438.1 mouse_genomes_project 11 74210798 74211746 + MGP_C3HHeJ_P0030341 Olfr401 protein_coding protein_coding MGP_C3HHeJ_T0016962.1 MGP_C3HHeJ_G0014929.1 mouse_genomes_project 11 49386595 49389739 - Gm12198 processed_transcript processed_transcript MGP_C3HHeJ_T0028947.1 MGP_C3HHeJ_G0018085.1 mouse_genomes_project 11 55209256 55226863 - MGP_C3HHeJ_P0028947 Nmur2 protein_coding protein_coding MGP_C3HHeJ_T0032775.1 MGP_C3HHeJ_G0019051.1 mouse_genomes_project 11 108299877 108306880 + MGP_C3HHeJ_P0032775 Psmc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032776.1 MGP_C3HHeJ_G0019051.1 mouse_genomes_project 11 108299877 108306880 + MGP_C3HHeJ_P0032776 Psmc5 protein_coding protein_coding MGP_C3HHeJ_T0012446.1 MGP_C3HHeJ_G0010550.1 mouse_genomes_project 11 31419162 31419692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031560.1 MGP_C3HHeJ_G0018737.1 mouse_genomes_project 11 96667137 96671033 + MGP_C3HHeJ_P0031560 Slc35b1 protein_coding protein_coding MGP_C3HHeJ_T0031561.1 MGP_C3HHeJ_G0018737.1 mouse_genomes_project 11 96667271 96674906 + MGP_C3HHeJ_P0031561 Slc35b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031562.1 MGP_C3HHeJ_G0018737.1 mouse_genomes_project 11 96667282 96674907 + MGP_C3HHeJ_P0031562 Slc35b1 protein_coding protein_coding MGP_C3HHeJ_T0031563.1 MGP_C3HHeJ_G0018737.1 mouse_genomes_project 11 96667286 96669454 + Slc35b1 protein_coding retained_intron MGP_C3HHeJ_T0031564.1 MGP_C3HHeJ_G0018737.1 mouse_genomes_project 11 96673128 96673797 + Slc35b1 protein_coding retained_intron MGP_C3HHeJ_T0032560.1 MGP_C3HHeJ_G0019000.1 mouse_genomes_project 11 104785354 104799638 - MGP_C3HHeJ_P0032560 Gfap protein_coding protein_coding MGP_C3HHeJ_T0032561.1 MGP_C3HHeJ_G0019000.1 mouse_genomes_project 11 104792574 104799707 - MGP_C3HHeJ_P0032561 Gfap protein_coding protein_coding MGP_C3HHeJ_T0032562.1 MGP_C3HHeJ_G0019000.1 mouse_genomes_project 11 104796983 104803424 - Gfap protein_coding processed_transcript MGP_C3HHeJ_T0033591.1 MGP_C3HHeJ_G0019217.1 mouse_genomes_project 11 121180223 121196700 + MGP_C3HHeJ_P0033591 C1qtnf1 protein_coding protein_coding MGP_C3HHeJ_T0033592.1 MGP_C3HHeJ_G0019217.1 mouse_genomes_project 11 121180495 121202836 + MGP_C3HHeJ_P0033592 C1qtnf1 protein_coding protein_coding MGP_C3HHeJ_T0033593.1 MGP_C3HHeJ_G0019217.1 mouse_genomes_project 11 121185831 121202836 + MGP_C3HHeJ_P0033593 C1qtnf1 protein_coding protein_coding MGP_C3HHeJ_T0033594.1 MGP_C3HHeJ_G0019217.1 mouse_genomes_project 11 121196337 121196707 + MGP_C3HHeJ_P0033594 C1qtnf1 protein_coding protein_coding MGP_C3HHeJ_T0032433.1 MGP_C3HHeJ_G0018979.1 mouse_genomes_project 11 104107682 104119018 + MGP_C3HHeJ_P0032433 Asb16 protein_coding protein_coding MGP_C3HHeJ_T0031173.1 MGP_C3HHeJ_G0018643.1 mouse_genomes_project 11 87219467 87234381 + MGP_C3HHeJ_P0031173 Rnft1 protein_coding protein_coding MGP_C3HHeJ_T0031174.1 MGP_C3HHeJ_G0018643.1 mouse_genomes_project 11 87219495 87225312 + Rnft1 protein_coding processed_transcript MGP_C3HHeJ_T0031175.1 MGP_C3HHeJ_G0018643.1 mouse_genomes_project 11 87219540 87220916 + Rnft1 protein_coding processed_transcript MGP_C3HHeJ_T0027975.1 MGP_C3HHeJ_G0017836.1 mouse_genomes_project 11 20406959 20496194 - MGP_C3HHeJ_P0027975 protein_coding protein_coding MGP_C3HHeJ_T0027976.1 MGP_C3HHeJ_G0017836.1 mouse_genomes_project 11 20410582 20496064 - MGP_C3HHeJ_P0027976 protein_coding protein_coding MGP_C3HHeJ_T0027977.1 MGP_C3HHeJ_G0017836.1 mouse_genomes_project 11 20410587 20492808 - MGP_C3HHeJ_P0027977 protein_coding protein_coding MGP_C3HHeJ_T0027978.1 MGP_C3HHeJ_G0017836.1 mouse_genomes_project 11 20410658 20470420 - protein_coding retained_intron MGP_C3HHeJ_T0027979.1 MGP_C3HHeJ_G0017836.1 mouse_genomes_project 11 20410846 20486700 - protein_coding processed_transcript MGP_C3HHeJ_T0027980.1 MGP_C3HHeJ_G0017836.1 mouse_genomes_project 11 20469624 20495996 - MGP_C3HHeJ_P0027980 protein_coding protein_coding MGP_C3HHeJ_T0003116.1 MGP_C3HHeJ_G0002894.1 mouse_genomes_project 11 59174909 59183411 + Gm16062 antisense antisense MGP_C3HHeJ_T0032169.1 MGP_C3HHeJ_G0018925.1 mouse_genomes_project 11 102676889 102691954 - MGP_C3HHeJ_P0032169 Ptrf protein_coding protein_coding MGP_C3HHeJ_T0032170.1 MGP_C3HHeJ_G0018925.1 mouse_genomes_project 11 102685473 102691618 - Ptrf protein_coding processed_transcript MGP_C3HHeJ_T0030205.1 MGP_C3HHeJ_G0018390.1 mouse_genomes_project 11 72330438 72348040 - MGP_C3HHeJ_P0030205 Tekt1 protein_coding protein_coding MGP_C3HHeJ_T0030206.1 MGP_C3HHeJ_G0018390.1 mouse_genomes_project 11 72330438 72347463 - MGP_C3HHeJ_P0030206 Tekt1 protein_coding protein_coding MGP_C3HHeJ_T0030207.1 MGP_C3HHeJ_G0018390.1 mouse_genomes_project 11 72330445 72348609 - MGP_C3HHeJ_P0030207 Tekt1 protein_coding protein_coding MGP_C3HHeJ_T0098815.1 MGP_C3HHeJ_G0037009.1 mouse_genomes_project 11 100388093 100388197 - Gm23640 snRNA snRNA MGP_C3HHeJ_T0033743.1 MGP_C3HHeJ_G0019243.1 mouse_genomes_project 11 123174379 123176855 - protein_coding retained_intron MGP_C3HHeJ_T0027504.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923107 936815 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0027505.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923110 938081 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0027506.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923257 937701 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0027507.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923427 940006 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0027508.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923427 941695 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0027509.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923427 941695 + MGP_C3HHeJ_P0027509 Sec14l4 protein_coding protein_coding MGP_C3HHeJ_T0027510.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 923486 940006 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0027511.1 MGP_C3HHeJ_G0017725.1 mouse_genomes_project 11 933696 940006 + Sec14l4 protein_coding processed_transcript MGP_C3HHeJ_T0006135.1 MGP_C3HHeJ_G0005114.1 mouse_genomes_project 11 29735462 29741020 + Gm12107 lincRNA lincRNA MGP_C3HHeJ_T0032614.1 MGP_C3HHeJ_G0019012.1 mouse_genomes_project 11 105132295 105180589 - MGP_C3HHeJ_P0032614 Map3k14 protein_coding protein_coding MGP_C3HHeJ_T0032615.1 MGP_C3HHeJ_G0019012.1 mouse_genomes_project 11 105133338 105134381 - Map3k14 protein_coding processed_transcript MGP_C3HHeJ_T0032616.1 MGP_C3HHeJ_G0019012.1 mouse_genomes_project 11 105149513 105154763 - Map3k14 protein_coding processed_transcript MGP_C3HHeJ_T0032617.1 MGP_C3HHeJ_G0019012.1 mouse_genomes_project 11 105151817 105152618 - Map3k14 protein_coding processed_transcript MGP_C3HHeJ_T0029974.1 MGP_C3HHeJ_G0018342.1 mouse_genomes_project 11 70138825 70140482 - MGP_C3HHeJ_P0029974 Gm21988 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029975.1 MGP_C3HHeJ_G0018342.1 mouse_genomes_project 11 70138825 70140544 - MGP_C3HHeJ_P0029975 Gm21988 protein_coding protein_coding MGP_C3HHeJ_T0029976.1 MGP_C3HHeJ_G0018342.1 mouse_genomes_project 11 70138828 70139760 - MGP_C3HHeJ_P0029976 Gm21988 protein_coding protein_coding MGP_C3HHeJ_T0098777.1 MGP_C3HHeJ_G0036971.1 mouse_genomes_project 11 60206639 60206736 + Gm23341 snRNA snRNA MGP_C3HHeJ_T0012451.1 MGP_C3HHeJ_G0010555.1 mouse_genomes_project 11 37999630 38000273 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009639.1 MGP_C3HHeJ_G0007772.1 mouse_genomes_project 11 83550059 83550122 - Mir7679 miRNA miRNA MGP_C3HHeJ_T0032384.1 MGP_C3HHeJ_G0018971.1 mouse_genomes_project 11 103930631 103932035 - MGP_C3HHeJ_P0032384 Ppy protein_coding protein_coding MGP_C3HHeJ_T0032385.1 MGP_C3HHeJ_G0018971.1 mouse_genomes_project 11 103930631 103932026 - MGP_C3HHeJ_P0032385 Ppy protein_coding protein_coding MGP_C3HHeJ_T0012476.1 MGP_C3HHeJ_G0010580.1 mouse_genomes_project 11 48543188 48543567 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028451.1 MGP_C3HHeJ_G0017953.1 mouse_genomes_project 11 45078049 45103462 - MGP_C3HHeJ_P0028451 Dppa1 protein_coding protein_coding MGP_C3HHeJ_T0028452.1 MGP_C3HHeJ_G0017953.1 mouse_genomes_project 11 45078987 45103462 - MGP_C3HHeJ_P0028452 Dppa1 protein_coding protein_coding MGP_C3HHeJ_T0098756.1 MGP_C3HHeJ_G0036950.1 mouse_genomes_project 11 12735332 12735439 + Gm24707 snRNA snRNA MGP_C3HHeJ_T0003157.1 MGP_C3HHeJ_G0002926.1 mouse_genomes_project 11 70539368 70541368 - Gm12316 antisense antisense MGP_C3HHeJ_T0028637.1 MGP_C3HHeJ_G0018005.1 mouse_genomes_project 11 49648446 49650200 + Grm6 protein_coding processed_transcript MGP_C3HHeJ_T0028638.1 MGP_C3HHeJ_G0018005.1 mouse_genomes_project 11 49648446 49665529 + MGP_C3HHeJ_P0028638 Grm6 protein_coding protein_coding MGP_C3HHeJ_T0028639.1 MGP_C3HHeJ_G0018005.1 mouse_genomes_project 11 49648747 49665500 + MGP_C3HHeJ_P0028639 Grm6 protein_coding protein_coding MGP_C3HHeJ_T0028640.1 MGP_C3HHeJ_G0018005.1 mouse_genomes_project 11 49655754 49665531 + Grm6 protein_coding processed_transcript MGP_C3HHeJ_T0030583.1 MGP_C3HHeJ_G0018497.1 mouse_genomes_project 11 77324626 77469263 - MGP_C3HHeJ_P0030583 Efcab5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030584.1 MGP_C3HHeJ_G0018497.1 mouse_genomes_project 11 77324636 77440873 - MGP_C3HHeJ_P0030584 Efcab5 protein_coding protein_coding MGP_C3HHeJ_T0030585.1 MGP_C3HHeJ_G0018497.1 mouse_genomes_project 11 77324665 77337798 - Efcab5 protein_coding retained_intron MGP_C3HHeJ_T0030586.1 MGP_C3HHeJ_G0018497.1 mouse_genomes_project 11 77324906 77400661 - MGP_C3HHeJ_P0030586 Efcab5 protein_coding protein_coding MGP_C3HHeJ_T0030587.1 MGP_C3HHeJ_G0018497.1 mouse_genomes_project 11 77337455 77384758 - Efcab5 protein_coding retained_intron MGP_C3HHeJ_T0030588.1 MGP_C3HHeJ_G0018497.1 mouse_genomes_project 11 77400434 77420821 - Efcab5 protein_coding processed_transcript MGP_C3HHeJ_T0012348.1 MGP_C3HHeJ_G0010452.1 mouse_genomes_project 11 756312 757136 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032390.1 MGP_C3HHeJ_G0018973.1 mouse_genomes_project 11 103979680 103983629 + Nags protein_coding processed_transcript MGP_C3HHeJ_T0032391.1 MGP_C3HHeJ_G0018973.1 mouse_genomes_project 11 103979716 103983629 + MGP_C3HHeJ_P0032391 Nags protein_coding protein_coding MGP_C3HHeJ_T0032392.1 MGP_C3HHeJ_G0018973.1 mouse_genomes_project 11 103980521 103983629 + Nags protein_coding processed_transcript MGP_C3HHeJ_T0003213.1 MGP_C3HHeJ_G0002970.1 mouse_genomes_project 11 98677937 98683311 + antisense antisense MGP_C3HHeJ_T0028376.1 MGP_C3HHeJ_G0017931.1 mouse_genomes_project 11 42074351 42099517 + MGP_C3HHeJ_P0028376 Pwwp2a protein_coding protein_coding MGP_C3HHeJ_T0028377.1 MGP_C3HHeJ_G0017931.1 mouse_genomes_project 11 42074411 42112733 + MGP_C3HHeJ_P0028377 Pwwp2a protein_coding protein_coding MGP_C3HHeJ_T0028378.1 MGP_C3HHeJ_G0017931.1 mouse_genomes_project 11 42074901 42076409 + Pwwp2a protein_coding processed_transcript MGP_C3HHeJ_T0028379.1 MGP_C3HHeJ_G0017931.1 mouse_genomes_project 11 42076499 42099517 + MGP_C3HHeJ_P0028379 Pwwp2a protein_coding protein_coding MGP_C3HHeJ_T0028380.1 MGP_C3HHeJ_G0017931.1 mouse_genomes_project 11 42097613 42113813 + Pwwp2a protein_coding processed_transcript MGP_C3HHeJ_T0028381.1 MGP_C3HHeJ_G0017931.1 mouse_genomes_project 11 42109977 42113154 + Pwwp2a protein_coding processed_transcript MGP_C3HHeJ_T0027655.1 MGP_C3HHeJ_G0017756.1 mouse_genomes_project 11 2503928 2516847 - MGP_C3HHeJ_P0027655 Ccdc117 protein_coding protein_coding MGP_C3HHeJ_T0032207.1 MGP_C3HHeJ_G0018934.1 mouse_genomes_project 11 102884919 102889656 + MGP_C3HHeJ_P0032207 Tubg2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100023.1 MGP_C3HHeJ_G0038217.1 mouse_genomes_project 11 69526018 69526162 - Gm25835 snoRNA snoRNA MGP_C3HHeJ_T0012403.1 MGP_C3HHeJ_G0010507.1 mouse_genomes_project 11 18660680 18661217 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032278.1 MGP_C3HHeJ_G0018950.1 mouse_genomes_project 11 103160024 103171214 - MGP_C3HHeJ_P0032278 Aarsd1 protein_coding protein_coding MGP_C3HHeJ_T0032280.1 MGP_C3HHeJ_G0018950.1 mouse_genomes_project 11 103163957 103170983 - Aarsd1 protein_coding processed_transcript MGP_C3HHeJ_T0032281.1 MGP_C3HHeJ_G0018950.1 mouse_genomes_project 11 103164558 103170981 - Aarsd1 protein_coding retained_intron MGP_C3HHeJ_T0032282.1 MGP_C3HHeJ_G0018950.1 mouse_genomes_project 11 103166845 103167662 - Aarsd1 protein_coding retained_intron MGP_C3HHeJ_T0032283.1 MGP_C3HHeJ_G0018950.1 mouse_genomes_project 11 103170346 103171005 - Aarsd1 protein_coding retained_intron MGP_C3HHeJ_T0032964.1 MGP_C3HHeJ_G0019089.1 mouse_genomes_project 11 111897016 111952644 - MGP_C3HHeJ_P0032964 Fam20a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032965.1 MGP_C3HHeJ_G0019089.1 mouse_genomes_project 11 111900193 111952621 - MGP_C3HHeJ_P0032965 Fam20a protein_coding protein_coding MGP_C3HHeJ_T0032966.1 MGP_C3HHeJ_G0019089.1 mouse_genomes_project 11 111900741 111903680 - Fam20a protein_coding retained_intron MGP_C3HHeJ_T0032967.1 MGP_C3HHeJ_G0019089.1 mouse_genomes_project 11 111901896 111911259 - Fam20a protein_coding retained_intron MGP_C3HHeJ_T0033139.1 MGP_C3HHeJ_G0019132.1 mouse_genomes_project 11 117944174 117960199 + MGP_C3HHeJ_P0033139 Cdr2l protein_coding protein_coding MGP_C3HHeJ_T0027535.1 MGP_C3HHeJ_G0017731.1 mouse_genomes_project 11 1052207 1074356 + MGP_C3HHeJ_P0027535 Sf3a1 protein_coding protein_coding MGP_C3HHeJ_T0027536.1 MGP_C3HHeJ_G0017731.1 mouse_genomes_project 11 1052212 1064925 + Sf3a1 protein_coding processed_transcript MGP_C3HHeJ_T0027537.1 MGP_C3HHeJ_G0017731.1 mouse_genomes_project 11 1052212 1063743 + Sf3a1 protein_coding retained_intron MGP_C3HHeJ_T0027538.1 MGP_C3HHeJ_G0017731.1 mouse_genomes_project 11 1069362 1071234 + Sf3a1 protein_coding retained_intron MGP_C3HHeJ_T0012443.1 MGP_C3HHeJ_G0010547.1 mouse_genomes_project 11 30841695 30842275 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000813.1 MGP_C3HHeJ_G0000754.1 mouse_genomes_project 11 16369302 16370169 - TEC TEC MGP_C3HHeJ_T0006304.1 MGP_C3HHeJ_G0005246.1 mouse_genomes_project 11 122739815 122743379 + Gm11766 lincRNA lincRNA MGP_C3HHeJ_T0009644.1 MGP_C3HHeJ_G0007777.1 mouse_genomes_project 11 88555693 88555757 + Mir142 miRNA miRNA MGP_C3HHeJ_T0033223.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118200401 118214425 - MGP_C3HHeJ_P0033223 Slc25a19 protein_coding protein_coding MGP_C3HHeJ_T0033224.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118201674 118209032 - MGP_C3HHeJ_P0033224 Slc25a19 protein_coding protein_coding MGP_C3HHeJ_T0033225.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118202783 118204133 - Slc25a19 protein_coding processed_transcript MGP_C3HHeJ_T0033226.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118203889 118214354 - Slc25a19 protein_coding processed_transcript MGP_C3HHeJ_T0033227.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118209213 118214353 - Slc25a19 protein_coding processed_transcript MGP_C3HHeJ_T0033228.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118209623 118214359 - Slc25a19 protein_coding processed_transcript MGP_C3HHeJ_T0033229.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118210085 118214528 - Slc25a19 protein_coding processed_transcript MGP_C3HHeJ_T0033230.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118210407 118214359 - MGP_C3HHeJ_P0033230 Slc25a19 protein_coding protein_coding MGP_C3HHeJ_T0033231.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118210428 118214195 - MGP_C3HHeJ_P0033231 Slc25a19 protein_coding protein_coding MGP_C3HHeJ_T0033232.1 MGP_C3HHeJ_G0019146.1 mouse_genomes_project 11 118210483 118214377 - MGP_C3HHeJ_P0033232 Slc25a19 protein_coding protein_coding MGP_C3HHeJ_T0031982.1 MGP_C3HHeJ_G0018841.1 mouse_genomes_project 11 100828905 100834645 - MGP_C3HHeJ_P0031982 Krt24 protein_coding protein_coding MGP_C3HHeJ_T0029467.1 MGP_C3HHeJ_G0018227.1 mouse_genomes_project 11 64635328 64812482 - MGP_C3HHeJ_P0029467 Arhgap44 protein_coding protein_coding MGP_C3HHeJ_T0029468.1 MGP_C3HHeJ_G0018227.1 mouse_genomes_project 11 64635331 64812805 - MGP_C3HHeJ_P0029468 Arhgap44 protein_coding protein_coding MGP_C3HHeJ_T0029469.1 MGP_C3HHeJ_G0018227.1 mouse_genomes_project 11 64635332 64812748 - MGP_C3HHeJ_P0029469 Arhgap44 protein_coding protein_coding MGP_C3HHeJ_T0029470.1 MGP_C3HHeJ_G0018227.1 mouse_genomes_project 11 64687781 64812411 - MGP_C3HHeJ_P0029470 Arhgap44 protein_coding protein_coding MGP_C3HHeJ_T0101632.1 MGP_C3HHeJ_G0039598.1 mouse_genomes_project 11 49797035 49799075 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029242.1 MGP_C3HHeJ_G0018183.1 mouse_genomes_project 11 60419968 60443787 + MGP_C3HHeJ_P0029242 Map2k3 protein_coding protein_coding MGP_C3HHeJ_T0029243.1 MGP_C3HHeJ_G0018183.1 mouse_genomes_project 11 60419989 60438483 + Map2k3 protein_coding retained_intron MGP_C3HHeJ_T0029244.1 MGP_C3HHeJ_G0018183.1 mouse_genomes_project 11 60419989 60433015 + Map2k3 protein_coding retained_intron MGP_C3HHeJ_T0029245.1 MGP_C3HHeJ_G0018183.1 mouse_genomes_project 11 60420001 60443770 + MGP_C3HHeJ_P0029245 Map2k3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029246.1 MGP_C3HHeJ_G0018183.1 mouse_genomes_project 11 60432778 60437663 + Map2k3 protein_coding processed_transcript MGP_C3HHeJ_T0029247.1 MGP_C3HHeJ_G0018183.1 mouse_genomes_project 11 60441568 60442728 + Map2k3 protein_coding retained_intron MGP_C3HHeJ_T0099999.1 MGP_C3HHeJ_G0038193.1 mouse_genomes_project 11 20698123 20698232 - Gm24398 snoRNA snoRNA MGP_C3HHeJ_T0012627.1 MGP_C3HHeJ_G0010731.1 mouse_genomes_project 11 106920375 106920964 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003246.1 MGP_C3HHeJ_G0002998.1 mouse_genomes_project 11 108003644 108024307 - Gm11651 antisense antisense MGP_C3HHeJ_T0003247.1 MGP_C3HHeJ_G0002998.1 mouse_genomes_project 11 108009688 108024279 - Gm11651 antisense antisense MGP_C3HHeJ_T0029307.1 MGP_C3HHeJ_G0018194.1 mouse_genomes_project 11 61023644 61031432 + MGP_C3HHeJ_P0029307 B9d1 protein_coding protein_coding MGP_C3HHeJ_T0029308.1 MGP_C3HHeJ_G0018194.1 mouse_genomes_project 11 61023703 61031432 + B9d1 protein_coding processed_transcript MGP_C3HHeJ_T0029309.1 MGP_C3HHeJ_G0018194.1 mouse_genomes_project 11 61023752 61026929 + B9d1 protein_coding processed_transcript MGP_C3HHeJ_T0029310.1 MGP_C3HHeJ_G0018194.1 mouse_genomes_project 11 61023755 61031432 + B9d1 protein_coding processed_transcript MGP_C3HHeJ_T0029311.1 MGP_C3HHeJ_G0018194.1 mouse_genomes_project 11 61027616 61031432 + MGP_C3HHeJ_P0029311 B9d1 protein_coding protein_coding MGP_C3HHeJ_T0029312.1 MGP_C3HHeJ_G0018194.1 mouse_genomes_project 11 61030815 61031432 + B9d1 protein_coding processed_transcript MGP_C3HHeJ_T0030929.1 MGP_C3HHeJ_G0018578.1 mouse_genomes_project 11 82591558 82593114 + MGP_C3HHeJ_P0030929 Ccl12 protein_coding protein_coding MGP_C3HHeJ_T0030930.1 MGP_C3HHeJ_G0018578.1 mouse_genomes_project 11 82591565 82593081 + Ccl12 protein_coding processed_transcript MGP_C3HHeJ_T0098794.1 MGP_C3HHeJ_G0036988.1 mouse_genomes_project 11 80030152 80030255 - Gm25867 snRNA snRNA MGP_C3HHeJ_T0003069.1 MGP_C3HHeJ_G0002851.1 mouse_genomes_project 11 27281351 27283626 + Gm12089 antisense antisense MGP_C3HHeJ_T0100024.1 MGP_C3HHeJ_G0038218.1 mouse_genomes_project 11 69526801 69526945 - Gm22988 snoRNA snoRNA MGP_C3HHeJ_T0032012.1 MGP_C3HHeJ_G0018868.1 mouse_genomes_project 11 101271929 101272082 - MGP_C3HHeJ_P0032012 Gm14190 protein_coding protein_coding MGP_C3HHeJ_T0032893.1 MGP_C3HHeJ_G0019075.1 mouse_genomes_project 11 110029036 110066308 - MGP_C3HHeJ_P0032893 Cacng5 protein_coding protein_coding MGP_C3HHeJ_T0032894.1 MGP_C3HHeJ_G0019075.1 mouse_genomes_project 11 110029102 110070580 - MGP_C3HHeJ_P0032894 Cacng5 protein_coding protein_coding MGP_C3HHeJ_T0028466.1 MGP_C3HHeJ_G0017958.1 mouse_genomes_project 11 47354367 47362240 + Rack1 protein_coding retained_intron MGP_C3HHeJ_T0028467.1 MGP_C3HHeJ_G0017958.1 mouse_genomes_project 11 47354392 47363354 + Rack1 protein_coding processed_transcript MGP_C3HHeJ_T0028468.1 MGP_C3HHeJ_G0017958.1 mouse_genomes_project 11 47354395 47363700 + MGP_C3HHeJ_P0028468 Rack1 protein_coding protein_coding MGP_C3HHeJ_T0028469.1 MGP_C3HHeJ_G0017958.1 mouse_genomes_project 11 47354409 47356703 + Rack1 protein_coding retained_intron MGP_C3HHeJ_T0028470.1 MGP_C3HHeJ_G0017958.1 mouse_genomes_project 11 47357187 47363339 + Rack1 protein_coding processed_transcript MGP_C3HHeJ_T0028471.1 MGP_C3HHeJ_G0017958.1 mouse_genomes_project 11 47362713 47363359 + Rack1 protein_coding processed_transcript MGP_C3HHeJ_T0030390.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75028142 75048576 - MGP_C3HHeJ_P0030390 Srr protein_coding protein_coding MGP_C3HHeJ_T0030391.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75028292 75048453 - Srr protein_coding processed_transcript MGP_C3HHeJ_T0030392.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75028576 75048551 - MGP_C3HHeJ_P0030392 Srr protein_coding protein_coding MGP_C3HHeJ_T0030393.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75028582 75048726 - MGP_C3HHeJ_P0030393 Srr protein_coding protein_coding MGP_C3HHeJ_T0030394.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75028602 75048551 - MGP_C3HHeJ_P0030394 Srr protein_coding protein_coding MGP_C3HHeJ_T0030395.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75031524 75048460 - MGP_C3HHeJ_P0030395 Srr protein_coding protein_coding MGP_C3HHeJ_T0030396.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75032005 75048438 - MGP_C3HHeJ_P0030396 Srr protein_coding protein_coding MGP_C3HHeJ_T0030397.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75032150 75048481 - Srr protein_coding retained_intron MGP_C3HHeJ_T0030398.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75032235 75048453 - Srr protein_coding retained_intron MGP_C3HHeJ_T0030399.1 MGP_C3HHeJ_G0018455.1 mouse_genomes_project 11 75032893 75048436 - MGP_C3HHeJ_P0030399 Srr protein_coding protein_coding MGP_C3HHeJ_T0031967.1 MGP_C3HHeJ_G0018837.1 mouse_genomes_project 11 100595405 100619808 - MGP_C3HHeJ_P0031967 Tns4 protein_coding protein_coding MGP_C3HHeJ_T0031968.1 MGP_C3HHeJ_G0018837.1 mouse_genomes_project 11 100597879 100603620 - Tns4 protein_coding processed_transcript MGP_C3HHeJ_T0031969.1 MGP_C3HHeJ_G0018837.1 mouse_genomes_project 11 100600434 100605097 - Tns4 protein_coding retained_intron MGP_C3HHeJ_T0031970.1 MGP_C3HHeJ_G0018837.1 mouse_genomes_project 11 100615966 100619787 - Tns4 protein_coding retained_intron MGP_C3HHeJ_T0016956.1 MGP_C3HHeJ_G0014925.1 mouse_genomes_project 11 31991852 32118529 - 4930469K13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0003201.1 MGP_C3HHeJ_G0002961.1 mouse_genomes_project 11 97001277 97017440 - Zfp652os antisense antisense MGP_C3HHeJ_T0028795.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52551568 52566853 + MGP_C3HHeJ_P0028795 Sept8 protein_coding protein_coding MGP_C3HHeJ_T0028796.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52552057 52575438 + MGP_C3HHeJ_P0028796 Sept8 protein_coding protein_coding MGP_C3HHeJ_T0028797.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52552081 52580908 + MGP_C3HHeJ_P0028797 Sept8 protein_coding protein_coding MGP_C3HHeJ_T0028798.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52552111 52575439 + MGP_C3HHeJ_P0028798 Sept8 protein_coding protein_coding MGP_C3HHeJ_T0028799.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52552219 52573241 + MGP_C3HHeJ_P0028799 Sept8 protein_coding protein_coding MGP_C3HHeJ_T0028800.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52552238 52573190 + MGP_C3HHeJ_P0028800 Sept8 protein_coding protein_coding MGP_C3HHeJ_T0028801.1 MGP_C3HHeJ_G0018049.1 mouse_genomes_project 11 52564361 52569516 + Sept8 protein_coding processed_transcript MGP_C3HHeJ_T0031086.1 MGP_C3HHeJ_G0018626.1 mouse_genomes_project 11 85491662 85499764 - MGP_C3HHeJ_P0031086 Dhrs11 protein_coding protein_coding MGP_C3HHeJ_T0031087.1 MGP_C3HHeJ_G0018626.1 mouse_genomes_project 11 85492798 85499794 - MGP_C3HHeJ_P0031087 Dhrs11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032008.1 MGP_C3HHeJ_G0018864.1 mouse_genomes_project 11 101218931 101219915 - MGP_C3HHeJ_P0032008 Krtap4-7 protein_coding protein_coding MGP_C3HHeJ_T0012499.1 MGP_C3HHeJ_G0010603.1 mouse_genomes_project 11 57101254 57101545 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030094.1 MGP_C3HHeJ_G0018367.1 mouse_genomes_project 11 70634842 70667424 + MGP_C3HHeJ_P0030094 Kif1c protein_coding protein_coding MGP_C3HHeJ_T0030095.1 MGP_C3HHeJ_G0018367.1 mouse_genomes_project 11 70634842 70641863 + MGP_C3HHeJ_P0030095 Kif1c protein_coding protein_coding MGP_C3HHeJ_T0030096.1 MGP_C3HHeJ_G0018367.1 mouse_genomes_project 11 70634855 70665845 + MGP_C3HHeJ_P0030096 Kif1c protein_coding protein_coding MGP_C3HHeJ_T0030097.1 MGP_C3HHeJ_G0018367.1 mouse_genomes_project 11 70634870 70665882 + MGP_C3HHeJ_P0030097 Kif1c protein_coding protein_coding MGP_C3HHeJ_T0030098.1 MGP_C3HHeJ_G0018367.1 mouse_genomes_project 11 70634944 70667424 + MGP_C3HHeJ_P0030098 Kif1c protein_coding protein_coding MGP_C3HHeJ_T0012600.1 MGP_C3HHeJ_G0010704.1 mouse_genomes_project 11 97066800 97066975 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012459.1 MGP_C3HHeJ_G0010563.1 mouse_genomes_project 11 40090581 40090913 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003152.1 MGP_C3HHeJ_G0002923.1 mouse_genomes_project 11 69231561 69232750 + Kdm6bos antisense antisense MGP_C3HHeJ_T0028430.1 MGP_C3HHeJ_G0017946.1 mouse_genomes_project 11 44699646 44703990 + MGP_C3HHeJ_P0028430 Fndc9 protein_coding protein_coding MGP_C3HHeJ_T0099987.1 MGP_C3HHeJ_G0038181.1 mouse_genomes_project 11 3556804 3556937 - Snora9 snoRNA snoRNA MGP_C3HHeJ_T0032809.1 MGP_C3HHeJ_G0019060.1 mouse_genomes_project 11 108553782 108670310 - MGP_C3HHeJ_P0032809 Tex2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032810.1 MGP_C3HHeJ_G0019060.1 mouse_genomes_project 11 108553794 108670265 - MGP_C3HHeJ_P0032810 Tex2 protein_coding protein_coding MGP_C3HHeJ_T0032811.1 MGP_C3HHeJ_G0019060.1 mouse_genomes_project 11 108596391 108634296 - MGP_C3HHeJ_P0032811 Tex2 protein_coding protein_coding MGP_C3HHeJ_T0032812.1 MGP_C3HHeJ_G0019060.1 mouse_genomes_project 11 108622525 108670758 - MGP_C3HHeJ_P0032812 Tex2 protein_coding protein_coding MGP_C3HHeJ_T0032813.1 MGP_C3HHeJ_G0019060.1 mouse_genomes_project 11 108622910 108635783 - MGP_C3HHeJ_P0032813 Tex2 protein_coding protein_coding MGP_C3HHeJ_T0098808.1 MGP_C3HHeJ_G0037002.1 mouse_genomes_project 11 90014224 90014328 - Gm22534 snRNA snRNA MGP_C3HHeJ_T0011215.1 MGP_C3HHeJ_G0009348.1 mouse_genomes_project 11 90063569 90063831 - Gm24734 misc_RNA misc_RNA MGP_C3HHeJ_T0098781.1 MGP_C3HHeJ_G0036975.1 mouse_genomes_project 11 68707694 68707797 + Gm22608 snRNA snRNA MGP_C3HHeJ_T0098347.1 MGP_C3HHeJ_G0036558.1 mouse_genomes_project 11 70814905 70823035 + Gm19967 sense_intronic sense_intronic MGP_C3HHeJ_T0030318.1 MGP_C3HHeJ_G0018425.1 mouse_genomes_project 11 73853438 73857640 - MGP_C3HHeJ_P0030318 Olfr389 protein_coding protein_coding MGP_C3HHeJ_T0030319.1 MGP_C3HHeJ_G0018425.1 mouse_genomes_project 11 73853704 73857586 - MGP_C3HHeJ_P0030319 Olfr389 protein_coding protein_coding MGP_C3HHeJ_T0031577.1 MGP_C3HHeJ_G0018742.1 mouse_genomes_project 11 97017358 97077701 + MGP_C3HHeJ_P0031577 Zfp652 protein_coding protein_coding MGP_C3HHeJ_T0031578.1 MGP_C3HHeJ_G0018742.1 mouse_genomes_project 11 97017695 97139465 + MGP_C3HHeJ_P0031578 Zfp652 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031580.1 MGP_C3HHeJ_G0018742.1 mouse_genomes_project 11 97053621 97077701 + MGP_C3HHeJ_P0031580 Zfp652 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031581.1 MGP_C3HHeJ_G0018742.1 mouse_genomes_project 11 97053688 97070071 + MGP_C3HHeJ_P0031581 Zfp652 protein_coding protein_coding MGP_C3HHeJ_T0030864.1 MGP_C3HHeJ_G0018559.1 mouse_genomes_project 11 80504273 80552800 + MGP_C3HHeJ_P0030864 Atad5 protein_coding protein_coding MGP_C3HHeJ_T0030865.1 MGP_C3HHeJ_G0018559.1 mouse_genomes_project 11 80504273 80552803 + MGP_C3HHeJ_P0030865 Atad5 protein_coding protein_coding MGP_C3HHeJ_T0030866.1 MGP_C3HHeJ_G0018559.1 mouse_genomes_project 11 80517474 80552803 + Atad5 protein_coding processed_transcript MGP_C3HHeJ_T0030867.1 MGP_C3HHeJ_G0018559.1 mouse_genomes_project 11 80518593 80524048 + Atad5 protein_coding retained_intron MGP_C3HHeJ_T0029007.1 MGP_C3HHeJ_G0018105.1 mouse_genomes_project 11 57708500 57717579 + MGP_C3HHeJ_P0029007 Gm12253 protein_coding protein_coding MGP_C3HHeJ_T0029047.1 MGP_C3HHeJ_G0018134.1 mouse_genomes_project 11 58233681 58243233 + MGP_C3HHeJ_P0029047 protein_coding protein_coding MGP_C3HHeJ_T0029048.1 MGP_C3HHeJ_G0018134.1 mouse_genomes_project 11 58233728 58247758 + MGP_C3HHeJ_P0029048 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029049.1 MGP_C3HHeJ_G0018134.1 mouse_genomes_project 11 58233833 58247565 + MGP_C3HHeJ_P0029049 protein_coding protein_coding MGP_C3HHeJ_T0029050.1 MGP_C3HHeJ_G0018134.1 mouse_genomes_project 11 58233833 58247565 + MGP_C3HHeJ_P0029050 protein_coding protein_coding MGP_C3HHeJ_T0009651.1 MGP_C3HHeJ_G0007784.1 mouse_genomes_project 11 98441025 98441132 + Mir8103 miRNA miRNA MGP_C3HHeJ_T0099991.1 MGP_C3HHeJ_G0038185.1 mouse_genomes_project 11 5098872 5098947 - Gm24051 snoRNA snoRNA MGP_C3HHeJ_T0032301.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103256385 103320896 - MGP_C3HHeJ_P0032301 Brca1 protein_coding protein_coding MGP_C3HHeJ_T0032302.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103264637 103277283 - Brca1 protein_coding retained_intron MGP_C3HHeJ_T0032303.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103281609 103291514 - Brca1 protein_coding retained_intron MGP_C3HHeJ_T0032304.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103293247 103293913 - MGP_C3HHeJ_P0032304 Brca1 protein_coding protein_coding MGP_C3HHeJ_T0032305.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103293261 103294261 - Brca1 protein_coding processed_transcript MGP_C3HHeJ_T0032306.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103294561 103320972 - MGP_C3HHeJ_P0032306 Brca1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032307.1 MGP_C3HHeJ_G0018957.1 mouse_genomes_project 11 103301137 103320599 - MGP_C3HHeJ_P0032307 Brca1 protein_coding protein_coding MGP_C3HHeJ_T0028228.1 MGP_C3HHeJ_G0017886.1 mouse_genomes_project 11 30199883 30201602 + MGP_C3HHeJ_P0028228 Hba-x protein_coding protein_coding MGP_C3HHeJ_T0028229.1 MGP_C3HHeJ_G0017886.1 mouse_genomes_project 11 30200376 30201602 + MGP_C3HHeJ_P0028229 Hba-x protein_coding protein_coding MGP_C3HHeJ_T0030559.1 MGP_C3HHeJ_G0018491.1 mouse_genomes_project 11 76957441 76994276 - MGP_C3HHeJ_P0030559 Gosr1 protein_coding protein_coding MGP_C3HHeJ_T0030560.1 MGP_C3HHeJ_G0018491.1 mouse_genomes_project 11 76979262 76994264 - Gosr1 protein_coding processed_transcript MGP_C3HHeJ_T0012370.1 MGP_C3HHeJ_G0010474.1 mouse_genomes_project 11 7567663 7567976 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012416.1 MGP_C3HHeJ_G0010520.1 mouse_genomes_project 11 22138370 22139892 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098813.1 MGP_C3HHeJ_G0037007.1 mouse_genomes_project 11 99902006 99902097 - Gm25048 snRNA snRNA MGP_C3HHeJ_T0012356.1 MGP_C3HHeJ_G0010460.1 mouse_genomes_project 11 3236504 3236848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028194.1 MGP_C3HHeJ_G0017882.1 mouse_genomes_project 11 30125774 30129344 + MGP_C3HHeJ_P0028194 Snrnp25 protein_coding protein_coding MGP_C3HHeJ_T0028195.1 MGP_C3HHeJ_G0017882.1 mouse_genomes_project 11 30125805 30128768 + MGP_C3HHeJ_P0028195 Snrnp25 protein_coding protein_coding MGP_C3HHeJ_T0028196.1 MGP_C3HHeJ_G0017882.1 mouse_genomes_project 11 30125817 30128011 + Snrnp25 protein_coding processed_transcript MGP_C3HHeJ_T0028197.1 MGP_C3HHeJ_G0017882.1 mouse_genomes_project 11 30125847 30129233 + MGP_C3HHeJ_P0028197 Snrnp25 protein_coding protein_coding MGP_C3HHeJ_T0028198.1 MGP_C3HHeJ_G0017882.1 mouse_genomes_project 11 30127121 30129344 + Snrnp25 protein_coding retained_intron MGP_C3HHeJ_T0028185.1 MGP_C3HHeJ_G0017879.1 mouse_genomes_project 11 29867906 29881926 + MGP_C3HHeJ_P0028185 4930524B15Rik protein_coding protein_coding MGP_C3HHeJ_T0032023.1 MGP_C3HHeJ_G0018879.1 mouse_genomes_project 11 101538037 101538802 + MGP_C3HHeJ_P0032023 Krtap31-1 protein_coding protein_coding MGP_C3HHeJ_T0012553.1 MGP_C3HHeJ_G0010657.1 mouse_genomes_project 11 76735623 76736126 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027851.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9473729 9721108 - MGP_C3HHeJ_P0027851 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027852.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9473797 9721261 - MGP_C3HHeJ_P0027852 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027853.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9473797 9721163 - MGP_C3HHeJ_P0027853 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027854.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9473799 9721264 - MGP_C3HHeJ_P0027854 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027855.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9473799 9656360 - MGP_C3HHeJ_P0027855 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027856.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9474232 9721104 - MGP_C3HHeJ_P0027856 Cobl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027857.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9509533 9612150 - MGP_C3HHeJ_P0027857 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027858.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9538906 9612098 - MGP_C3HHeJ_P0027858 Cobl protein_coding protein_coding MGP_C3HHeJ_T0027859.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9547389 9721056 - Cobl protein_coding retained_intron MGP_C3HHeJ_T0027860.1 MGP_C3HHeJ_G0017803.1 mouse_genomes_project 11 9586280 9622654 - MGP_C3HHeJ_P0027860 Cobl protein_coding protein_coding MGP_C3HHeJ_T0032018.1 MGP_C3HHeJ_G0018874.1 mouse_genomes_project 11 101424888 101431891 - MGP_C3HHeJ_P0032018 Gm11564 protein_coding protein_coding MGP_C3HHeJ_T0031739.1 MGP_C3HHeJ_G0018784.1 mouse_genomes_project 11 98737154 98757166 - MGP_C3HHeJ_P0031739 Gpr179 protein_coding protein_coding MGP_C3HHeJ_T0031740.1 MGP_C3HHeJ_G0018784.1 mouse_genomes_project 11 98754580 98757227 - Gpr179 protein_coding retained_intron MGP_C3HHeJ_T0012431.1 MGP_C3HHeJ_G0010535.1 mouse_genomes_project 11 27624385 27624857 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006149.1 MGP_C3HHeJ_G0005128.1 mouse_genomes_project 11 42366249 42548896 + Gm12153 lincRNA lincRNA MGP_C3HHeJ_T0029985.1 MGP_C3HHeJ_G0018346.1 mouse_genomes_project 11 70304230 70322172 - MGP_C3HHeJ_P0029985 Pelp1 protein_coding protein_coding MGP_C3HHeJ_T0029986.1 MGP_C3HHeJ_G0018346.1 mouse_genomes_project 11 70314782 70322175 - MGP_C3HHeJ_P0029986 Pelp1 protein_coding protein_coding MGP_C3HHeJ_T0028699.1 MGP_C3HHeJ_G0018022.1 mouse_genomes_project 11 50526019 50538819 - MGP_C3HHeJ_P0028699 Rmnd5b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028700.1 MGP_C3HHeJ_G0018022.1 mouse_genomes_project 11 50526021 50539068 - MGP_C3HHeJ_P0028700 Rmnd5b protein_coding protein_coding MGP_C3HHeJ_T0028701.1 MGP_C3HHeJ_G0018022.1 mouse_genomes_project 11 50526387 50528101 - MGP_C3HHeJ_P0028701 Rmnd5b protein_coding protein_coding MGP_C3HHeJ_T0028702.1 MGP_C3HHeJ_G0018022.1 mouse_genomes_project 11 50526431 50532779 - MGP_C3HHeJ_P0028702 Rmnd5b protein_coding unknown_likely_coding MGP_C3HHeJ_T0028703.1 MGP_C3HHeJ_G0018022.1 mouse_genomes_project 11 50526431 50532779 - MGP_C3HHeJ_P0028703 Rmnd5b protein_coding unknown_likely_coding MGP_C3HHeJ_T0028704.1 MGP_C3HHeJ_G0018022.1 mouse_genomes_project 11 50532496 50538925 - Rmnd5b protein_coding processed_transcript MGP_C3HHeJ_T0030336.1 MGP_C3HHeJ_G0018436.1 mouse_genomes_project 11 74132257 74133260 - MGP_C3HHeJ_P0030336 Olfr399 protein_coding protein_coding MGP_C3HHeJ_T0032248.1 MGP_C3HHeJ_G0018943.1 mouse_genomes_project 11 103021064 103029340 + Cntd1 protein_coding processed_transcript MGP_C3HHeJ_T0032249.1 MGP_C3HHeJ_G0018943.1 mouse_genomes_project 11 103021148 103031496 + MGP_C3HHeJ_P0032249 Cntd1 protein_coding protein_coding MGP_C3HHeJ_T0032250.1 MGP_C3HHeJ_G0018943.1 mouse_genomes_project 11 103028849 103039113 + Cntd1 protein_coding processed_transcript MGP_C3HHeJ_T0011699.1 MGP_C3HHeJ_G0009829.1 mouse_genomes_project 11 58975115 58976405 + MGP_C3HHeJ_P0011699 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0003160.1 MGP_C3HHeJ_G0002929.1 mouse_genomes_project 11 76034437 76034963 + Gm16075 antisense antisense MGP_C3HHeJ_T0009581.1 MGP_C3HHeJ_G0007714.1 mouse_genomes_project 11 33855207 33855293 + Mir103-1 miRNA miRNA MGP_C3HHeJ_T0012354.1 MGP_C3HHeJ_G0010458.1 mouse_genomes_project 11 2654633 2654910 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029328.1 MGP_C3HHeJ_G0018197.1 mouse_genomes_project 11 61199292 61248664 - Slc5a10 protein_coding processed_transcript MGP_C3HHeJ_T0029329.1 MGP_C3HHeJ_G0018197.1 mouse_genomes_project 11 61199293 61247784 - MGP_C3HHeJ_P0029329 Slc5a10 protein_coding protein_coding MGP_C3HHeJ_T0029330.1 MGP_C3HHeJ_G0018197.1 mouse_genomes_project 11 61199293 61248637 - MGP_C3HHeJ_P0029330 Slc5a10 protein_coding protein_coding MGP_C3HHeJ_T0029331.1 MGP_C3HHeJ_G0018197.1 mouse_genomes_project 11 61199303 61247835 - MGP_C3HHeJ_P0029331 Slc5a10 protein_coding protein_coding MGP_C3HHeJ_T0029730.1 MGP_C3HHeJ_G0018289.1 mouse_genomes_project 11 69396554 69402671 - MGP_C3HHeJ_P0029730 Efnb3 protein_coding protein_coding MGP_C3HHeJ_T0012479.1 MGP_C3HHeJ_G0010583.1 mouse_genomes_project 11 49781990 49785326 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031349.1 MGP_C3HHeJ_G0018686.1 mouse_genomes_project 11 90000702 90018040 + MGP_C3HHeJ_P0031349 Gm525 protein_coding protein_coding MGP_C3HHeJ_T0031350.1 MGP_C3HHeJ_G0018686.1 mouse_genomes_project 11 90001881 90017965 + MGP_C3HHeJ_P0031350 Gm525 protein_coding protein_coding MGP_C3HHeJ_T0028247.1 MGP_C3HHeJ_G0017895.1 mouse_genomes_project 11 31091147 31120640 - MGP_C3HHeJ_P0028247 Fgf18 protein_coding protein_coding MGP_C3HHeJ_T0031894.1 MGP_C3HHeJ_G0018823.1 mouse_genomes_project 11 100188530 100201497 + MGP_C3HHeJ_P0031894 Psmd3 protein_coding protein_coding MGP_C3HHeJ_T0031895.1 MGP_C3HHeJ_G0018823.1 mouse_genomes_project 11 100188541 100198026 + Psmd3 protein_coding retained_intron MGP_C3HHeJ_T0031896.1 MGP_C3HHeJ_G0018823.1 mouse_genomes_project 11 100188567 100200559 + Psmd3 protein_coding retained_intron MGP_C3HHeJ_T0031897.1 MGP_C3HHeJ_G0018823.1 mouse_genomes_project 11 100193771 100199349 + MGP_C3HHeJ_P0031897 Psmd3 protein_coding protein_coding MGP_C3HHeJ_T0031898.1 MGP_C3HHeJ_G0018823.1 mouse_genomes_project 11 100195969 100196978 + Psmd3 protein_coding retained_intron MGP_C3HHeJ_T0098771.1 MGP_C3HHeJ_G0036965.1 mouse_genomes_project 11 46444646 46444807 - Gm23039 snRNA snRNA MGP_C3HHeJ_T0003281.1 MGP_C3HHeJ_G0003026.1 mouse_genomes_project 11 119924668 119930457 - Gm16045 antisense antisense MGP_C3HHeJ_T0032136.1 MGP_C3HHeJ_G0018917.1 mouse_genomes_project 11 102408901 102409627 + MGP_C3HHeJ_P0032136 Hspb9 protein_coding protein_coding MGP_C3HHeJ_T0032137.1 MGP_C3HHeJ_G0018917.1 mouse_genomes_project 11 102408973 102409625 + MGP_C3HHeJ_P0032137 Hspb9 protein_coding protein_coding MGP_C3HHeJ_T0006170.1 MGP_C3HHeJ_G0005147.1 mouse_genomes_project 11 59300578 59300969 + 1810063I02Rik lincRNA lincRNA MGP_C3HHeJ_T0012583.1 MGP_C3HHeJ_G0010687.1 mouse_genomes_project 11 87817735 87818206 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009667.1 MGP_C3HHeJ_G0007800.1 mouse_genomes_project 11 104532680 104532789 - Gm22920 miRNA miRNA MGP_C3HHeJ_T0031032.1 MGP_C3HHeJ_G0018612.1 mouse_genomes_project 11 84318184 84320461 + MGP_C3HHeJ_P0031032 Wfdc17 protein_coding protein_coding MGP_C3HHeJ_T0033951.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123930175 123941515 - MGP_C3HHeJ_P0033951 Sectm1b protein_coding protein_coding MGP_C3HHeJ_T0033952.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123931248 123941484 - MGP_C3HHeJ_P0033952 Sectm1b protein_coding protein_coding MGP_C3HHeJ_T0033953.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123931253 123933081 - MGP_C3HHeJ_P0033953 Sectm1b protein_coding protein_coding MGP_C3HHeJ_T0033954.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123931299 123941491 - MGP_C3HHeJ_P0033954 Sectm1b protein_coding protein_coding MGP_C3HHeJ_T0033955.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123931674 123941401 - MGP_C3HHeJ_P0033955 Sectm1b protein_coding protein_coding MGP_C3HHeJ_T0033956.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123932129 123941249 - Sectm1b protein_coding retained_intron MGP_C3HHeJ_T0033957.1 MGP_C3HHeJ_G0019284.1 mouse_genomes_project 11 123932951 123933346 - Sectm1b protein_coding processed_transcript MGP_C3HHeJ_T0028539.1 MGP_C3HHeJ_G0017979.1 mouse_genomes_project 11 48138261 48139334 + MGP_C3HHeJ_P0028539 Olfr1389 protein_coding protein_coding MGP_C3HHeJ_T0003047.1 MGP_C3HHeJ_G0002836.1 mouse_genomes_project 11 2908181 2909995 + Gm11967 antisense antisense MGP_C3HHeJ_T0006261.1 MGP_C3HHeJ_G0005212.1 mouse_genomes_project 11 104485710 104487365 - Gm11636 lincRNA lincRNA MGP_C3HHeJ_T0033542.1 MGP_C3HHeJ_G0019204.1 mouse_genomes_project 11 120533466 120550226 + MGP_C3HHeJ_P0033542 Afmid protein_coding protein_coding MGP_C3HHeJ_T0033543.1 MGP_C3HHeJ_G0019204.1 mouse_genomes_project 11 120533516 120547552 + MGP_C3HHeJ_P0033543 Afmid protein_coding protein_coding MGP_C3HHeJ_T0033544.1 MGP_C3HHeJ_G0019204.1 mouse_genomes_project 11 120533523 120542055 + Afmid protein_coding retained_intron MGP_C3HHeJ_T0033545.1 MGP_C3HHeJ_G0019204.1 mouse_genomes_project 11 120541508 120545735 + Afmid protein_coding retained_intron MGP_C3HHeJ_T0033546.1 MGP_C3HHeJ_G0019204.1 mouse_genomes_project 11 120541634 120547549 + Afmid protein_coding retained_intron MGP_C3HHeJ_T0033547.1 MGP_C3HHeJ_G0019204.1 mouse_genomes_project 11 120541677 120545842 + Afmid protein_coding retained_intron MGP_C3HHeJ_T0033573.1 MGP_C3HHeJ_G0019212.1 mouse_genomes_project 11 121000565 121006966 - Usp36 protein_coding retained_intron MGP_C3HHeJ_T0033574.1 MGP_C3HHeJ_G0019212.1 mouse_genomes_project 11 121000566 121033109 - MGP_C3HHeJ_P0033574 Usp36 protein_coding protein_coding MGP_C3HHeJ_T0033575.1 MGP_C3HHeJ_G0019212.1 mouse_genomes_project 11 121001783 121004203 - Usp36 protein_coding retained_intron MGP_C3HHeJ_T0033576.1 MGP_C3HHeJ_G0019212.1 mouse_genomes_project 11 121025814 121033109 - Usp36 protein_coding retained_intron MGP_C3HHeJ_T0032354.1 MGP_C3HHeJ_G0018965.1 mouse_genomes_project 11 103791349 103795911 - MGP_C3HHeJ_P0032354 Sost protein_coding protein_coding MGP_C3HHeJ_T0101643.1 MGP_C3HHeJ_G0039609.1 mouse_genomes_project 11 73973323 73973364 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006306.1 MGP_C3HHeJ_G0005248.1 mouse_genomes_project 11 123475785 123477143 + Gm17586 lincRNA lincRNA MGP_C3HHeJ_T0030720.1 MGP_C3HHeJ_G0018522.1 mouse_genomes_project 11 78498404 78511346 + MGP_C3HHeJ_P0030720 Proca1 protein_coding protein_coding MGP_C3HHeJ_T0030721.1 MGP_C3HHeJ_G0018522.1 mouse_genomes_project 11 78499716 78511309 + MGP_C3HHeJ_P0030721 Proca1 protein_coding protein_coding MGP_C3HHeJ_T0030722.1 MGP_C3HHeJ_G0018522.1 mouse_genomes_project 11 78499746 78511605 + MGP_C3HHeJ_P0030722 Proca1 protein_coding protein_coding MGP_C3HHeJ_T0030723.1 MGP_C3HHeJ_G0018522.1 mouse_genomes_project 11 78510268 78510933 + Proca1 protein_coding processed_transcript MGP_C3HHeJ_T0012386.1 MGP_C3HHeJ_G0010490.1 mouse_genomes_project 11 14997258 14997942 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098269.1 MGP_C3HHeJ_G0036481.1 mouse_genomes_project 11 118782079 118782205 - Gm26413 scaRNA scaRNA MGP_C3HHeJ_T0006308.1 MGP_C3HHeJ_G0005250.1 mouse_genomes_project 11 124704234 124711447 + Gm12589 lincRNA lincRNA MGP_C3HHeJ_T0009631.1 MGP_C3HHeJ_G0007764.1 mouse_genomes_project 11 77311114 77311223 - Mir423 miRNA miRNA MGP_C3HHeJ_T0028162.1 MGP_C3HHeJ_G0017873.1 mouse_genomes_project 11 28739760 28975838 + MGP_C3HHeJ_P0028162 Asb3 protein_coding protein_coding MGP_C3HHeJ_T0028168.1 MGP_C3HHeJ_G0017873.1 mouse_genomes_project 11 28820542 28977209 + MGP_C3HHeJ_P0028168 Asb3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028169.1 MGP_C3HHeJ_G0017873.1 mouse_genomes_project 11 28820555 28960612 + MGP_C3HHeJ_P0028169 Asb3 protein_coding protein_coding MGP_C3HHeJ_T0028170.1 MGP_C3HHeJ_G0017873.1 mouse_genomes_project 11 28820584 28898898 + Asb3 protein_coding retained_intron MGP_C3HHeJ_T0028173.1 MGP_C3HHeJ_G0017873.1 mouse_genomes_project 11 28868391 28975747 + MGP_C3HHeJ_P0028173 Asb3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028174.1 MGP_C3HHeJ_G0017873.1 mouse_genomes_project 11 28922075 28925532 + Asb3 protein_coding retained_intron MGP_C3HHeJ_T0028328.1 MGP_C3HHeJ_G0017918.1 mouse_genomes_project 11 39062135 39068895 - MGP_C3HHeJ_P0028328 Ccng1 protein_coding protein_coding MGP_C3HHeJ_T0028329.1 MGP_C3HHeJ_G0017918.1 mouse_genomes_project 11 39062673 39067522 - Ccng1 protein_coding processed_transcript MGP_C3HHeJ_T0028447.1 MGP_C3HHeJ_G0017950.1 mouse_genomes_project 11 44933254 44960452 + MGP_C3HHeJ_P0028447 Havcr2 protein_coding protein_coding MGP_C3HHeJ_T0028448.1 MGP_C3HHeJ_G0017950.1 mouse_genomes_project 11 44933288 44960443 + MGP_C3HHeJ_P0028448 Havcr2 protein_coding protein_coding MGP_C3HHeJ_T0012422.1 MGP_C3HHeJ_G0010526.1 mouse_genomes_project 11 25065457 25065854 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032290.1 MGP_C3HHeJ_G0018953.1 mouse_genomes_project 11 103199289 103205988 + MGP_C3HHeJ_P0032290 Rpl27-ps3 protein_coding protein_coding MGP_C3HHeJ_T0032291.1 MGP_C3HHeJ_G0018953.1 mouse_genomes_project 11 103199473 103200970 + Rpl27-ps3 protein_coding processed_transcript MGP_C3HHeJ_T0032292.1 MGP_C3HHeJ_G0018953.1 mouse_genomes_project 11 103200647 103205951 + MGP_C3HHeJ_P0032292 Rpl27-ps3 protein_coding protein_coding MGP_C3HHeJ_T0032293.1 MGP_C3HHeJ_G0018953.1 mouse_genomes_project 11 103203094 103205951 + Rpl27-ps3 protein_coding processed_transcript MGP_C3HHeJ_T0032336.1 MGP_C3HHeJ_G0018961.1 mouse_genomes_project 11 103467429 103470443 + MGP_C3HHeJ_P0032336 Arl4d protein_coding protein_coding MGP_C3HHeJ_T0012525.1 MGP_C3HHeJ_G0010629.1 mouse_genomes_project 11 64822646 64823236 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016979.1 MGP_C3HHeJ_G0014937.1 mouse_genomes_project 11 62177798 62179729 + 2410006H16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0033748.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123197537 123207505 - Faap100 protein_coding retained_intron MGP_C3HHeJ_T0033749.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123198044 123207534 - MGP_C3HHeJ_P0033749 Faap100 protein_coding protein_coding MGP_C3HHeJ_T0033750.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123198363 123199371 - Faap100 protein_coding retained_intron MGP_C3HHeJ_T0033751.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123201732 123202929 - Faap100 protein_coding processed_transcript MGP_C3HHeJ_T0033752.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123201787 123207506 - Faap100 protein_coding retained_intron MGP_C3HHeJ_T0033753.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123204939 123207479 - Faap100 protein_coding processed_transcript MGP_C3HHeJ_T0033754.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123205755 123207244 - Faap100 protein_coding processed_transcript MGP_C3HHeJ_T0033755.1 MGP_C3HHeJ_G0019246.1 mouse_genomes_project 11 123206092 123207505 - Faap100 protein_coding processed_transcript MGP_C3HHeJ_T0006209.1 MGP_C3HHeJ_G0005179.1 mouse_genomes_project 11 80182272 80183181 - 9130204K15Rik lincRNA lincRNA MGP_C3HHeJ_T0006210.1 MGP_C3HHeJ_G0005179.1 mouse_genomes_project 11 80182339 80275890 - 9130204K15Rik lincRNA lincRNA MGP_C3HHeJ_T0006211.1 MGP_C3HHeJ_G0005179.1 mouse_genomes_project 11 80182802 80262540 - 9130204K15Rik lincRNA lincRNA MGP_C3HHeJ_T0006212.1 MGP_C3HHeJ_G0005179.1 mouse_genomes_project 11 80197327 80206388 - 9130204K15Rik lincRNA lincRNA MGP_C3HHeJ_T0033245.1 MGP_C3HHeJ_G0019149.1 mouse_genomes_project 11 118393759 118408121 - MGP_C3HHeJ_P0033245 Caskin2 protein_coding protein_coding MGP_C3HHeJ_T0033246.1 MGP_C3HHeJ_G0019149.1 mouse_genomes_project 11 118394576 118395458 - Caskin2 protein_coding processed_transcript MGP_C3HHeJ_T0033247.1 MGP_C3HHeJ_G0019149.1 mouse_genomes_project 11 118399312 118402600 - MGP_C3HHeJ_P0033247 Caskin2 protein_coding protein_coding MGP_C3HHeJ_T0033248.1 MGP_C3HHeJ_G0019149.1 mouse_genomes_project 11 118401274 118408130 - MGP_C3HHeJ_P0033248 Caskin2 protein_coding protein_coding MGP_C3HHeJ_T0098767.1 MGP_C3HHeJ_G0036961.1 mouse_genomes_project 11 34825385 34825491 + Gm22127 snRNA snRNA MGP_C3HHeJ_T0006290.1 MGP_C3HHeJ_G0005235.1 mouse_genomes_project 11 119685045 119691307 - Gm11728 lincRNA lincRNA MGP_C3HHeJ_T0006291.1 MGP_C3HHeJ_G0005235.1 mouse_genomes_project 11 119689549 119691302 - Gm11728 lincRNA lincRNA MGP_C3HHeJ_T0031522.1 MGP_C3HHeJ_G0018728.1 mouse_genomes_project 11 96261504 96277394 + MGP_C3HHeJ_P0031522 Ppp1r9b protein_coding protein_coding MGP_C3HHeJ_T0031523.1 MGP_C3HHeJ_G0018728.1 mouse_genomes_project 11 96263348 96271834 + Ppp1r9b protein_coding processed_transcript MGP_C3HHeJ_T0031524.1 MGP_C3HHeJ_G0018728.1 mouse_genomes_project 11 96266553 96277394 + MGP_C3HHeJ_P0031524 Ppp1r9b protein_coding protein_coding MGP_C3HHeJ_T0101665.1 MGP_C3HHeJ_G0039631.1 mouse_genomes_project 11 103098510 103099407 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0028363.1 MGP_C3HHeJ_G0017926.1 mouse_genomes_project 11 41810196 41815551 + MGP_C3HHeJ_P0028363 Slu7 protein_coding protein_coding MGP_C3HHeJ_T0028364.1 MGP_C3HHeJ_G0017926.1 mouse_genomes_project 11 41810196 41822660 + MGP_C3HHeJ_P0028364 Slu7 protein_coding protein_coding MGP_C3HHeJ_T0028365.1 MGP_C3HHeJ_G0017926.1 mouse_genomes_project 11 41810211 41825256 + MGP_C3HHeJ_P0028365 Slu7 protein_coding protein_coding MGP_C3HHeJ_T0028366.1 MGP_C3HHeJ_G0017926.1 mouse_genomes_project 11 41814617 41825256 + MGP_C3HHeJ_P0028366 Slu7 protein_coding protein_coding MGP_C3HHeJ_T0028367.1 MGP_C3HHeJ_G0017926.1 mouse_genomes_project 11 41814649 41816484 + Slu7 protein_coding processed_transcript MGP_C3HHeJ_T0028368.1 MGP_C3HHeJ_G0017926.1 mouse_genomes_project 11 41818681 41819907 + Slu7 protein_coding processed_transcript MGP_C3HHeJ_T0031750.1 MGP_C3HHeJ_G0018788.1 mouse_genomes_project 11 98921921 98988524 - MGP_C3HHeJ_P0031750 Srcin1 protein_coding protein_coding MGP_C3HHeJ_T0031751.1 MGP_C3HHeJ_G0018788.1 mouse_genomes_project 11 98925472 98987362 - MGP_C3HHeJ_P0031751 Srcin1 protein_coding protein_coding MGP_C3HHeJ_T0031752.1 MGP_C3HHeJ_G0018788.1 mouse_genomes_project 11 98925546 98980418 - MGP_C3HHeJ_P0031752 Srcin1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031753.1 MGP_C3HHeJ_G0018788.1 mouse_genomes_project 11 98930213 98987253 - MGP_C3HHeJ_P0031753 Srcin1 protein_coding protein_coding MGP_C3HHeJ_T0031754.1 MGP_C3HHeJ_G0018788.1 mouse_genomes_project 11 98947528 98987238 - MGP_C3HHeJ_P0031754 Srcin1 protein_coding protein_coding MGP_C3HHeJ_T0031755.1 MGP_C3HHeJ_G0018788.1 mouse_genomes_project 11 98964358 98988535 - Srcin1 protein_coding processed_transcript MGP_C3HHeJ_T0006270.1 MGP_C3HHeJ_G0005220.1 mouse_genomes_project 11 112077233 112079835 + 1700023C21Rik lincRNA lincRNA MGP_C3HHeJ_T0100048.1 MGP_C3HHeJ_G0038242.1 mouse_genomes_project 11 104722077 104722214 + Gm22683 snoRNA snoRNA MGP_C3HHeJ_T0101638.1 MGP_C3HHeJ_G0039604.1 mouse_genomes_project 11 58964694 58965069 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029124.1 MGP_C3HHeJ_G0018159.1 mouse_genomes_project 11 59156186 59174846 - MGP_C3HHeJ_P0029124 Flcn protein_coding protein_coding MGP_C3HHeJ_T0029125.1 MGP_C3HHeJ_G0018159.1 mouse_genomes_project 11 59156235 59174754 - Flcn protein_coding retained_intron MGP_C3HHeJ_T0029126.1 MGP_C3HHeJ_G0018159.1 mouse_genomes_project 11 59156568 59174418 - MGP_C3HHeJ_P0029126 Flcn protein_coding protein_coding MGP_C3HHeJ_T0029127.1 MGP_C3HHeJ_G0018159.1 mouse_genomes_project 11 59168472 59174431 - Flcn protein_coding processed_transcript MGP_C3HHeJ_T0029128.1 MGP_C3HHeJ_G0018159.1 mouse_genomes_project 11 59169262 59174824 - MGP_C3HHeJ_P0029128 Flcn protein_coding protein_coding MGP_C3HHeJ_T0029129.1 MGP_C3HHeJ_G0018159.1 mouse_genomes_project 11 59173855 59174541 - Flcn protein_coding retained_intron MGP_C3HHeJ_T0012467.1 MGP_C3HHeJ_G0010571.1 mouse_genomes_project 11 45030745 45031322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030580.1 MGP_C3HHeJ_G0018496.1 mouse_genomes_project 11 77275386 77311486 - MGP_C3HHeJ_P0030580 Nsrp1 protein_coding protein_coding MGP_C3HHeJ_T0030581.1 MGP_C3HHeJ_G0018496.1 mouse_genomes_project 11 77281729 77311088 - MGP_C3HHeJ_P0030581 Nsrp1 protein_coding protein_coding MGP_C3HHeJ_T0030582.1 MGP_C3HHeJ_G0018496.1 mouse_genomes_project 11 77285586 77311486 - Nsrp1 protein_coding processed_transcript MGP_C3HHeJ_T0012641.1 MGP_C3HHeJ_G0010745.1 mouse_genomes_project 11 113580508 113581340 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100018.1 MGP_C3HHeJ_G0038212.1 mouse_genomes_project 11 62178371 62178443 + Snord49a snoRNA snoRNA MGP_C3HHeJ_T0012373.1 MGP_C3HHeJ_G0010477.1 mouse_genomes_project 11 10269801 10270519 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012543.1 MGP_C3HHeJ_G0010647.1 mouse_genomes_project 11 73210068 73211703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009616.1 MGP_C3HHeJ_G0007749.1 mouse_genomes_project 11 70135394 70135519 - Mir497b miRNA miRNA MGP_C3HHeJ_T0027878.1 MGP_C3HHeJ_G0017808.1 mouse_genomes_project 11 14292303 14330656 - MGP_C3HHeJ_P0027878 Plek protein_coding protein_coding MGP_C3HHeJ_T0027879.1 MGP_C3HHeJ_G0017808.1 mouse_genomes_project 11 14315595 14323548 - MGP_C3HHeJ_P0027879 Plek protein_coding protein_coding MGP_C3HHeJ_T0003278.1 MGP_C3HHeJ_G0003024.1 mouse_genomes_project 11 119172501 119176360 - Gm29292 antisense antisense MGP_C3HHeJ_T0030054.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70577744 70578616 + Rnf167 protein_coding processed_transcript MGP_C3HHeJ_T0030055.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70577796 70581917 + MGP_C3HHeJ_P0030055 Rnf167 protein_coding protein_coding MGP_C3HHeJ_T0030056.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70577796 70581908 + MGP_C3HHeJ_P0030056 Rnf167 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030057.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70578064 70580275 + MGP_C3HHeJ_P0030057 Rnf167 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030058.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70578070 70581906 + Rnf167 protein_coding retained_intron MGP_C3HHeJ_T0030059.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70578078 70578764 + Rnf167 protein_coding retained_intron MGP_C3HHeJ_T0030060.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70578452 70580844 + Rnf167 protein_coding retained_intron MGP_C3HHeJ_T0030061.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70578584 70581587 + Rnf167 protein_coding retained_intron MGP_C3HHeJ_T0030062.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70579631 70580042 + Rnf167 protein_coding retained_intron MGP_C3HHeJ_T0030063.1 MGP_C3HHeJ_G0018361.1 mouse_genomes_project 11 70580445 70580844 + Rnf167 protein_coding retained_intron MGP_C3HHeJ_T0012372.1 MGP_C3HHeJ_G0010476.1 mouse_genomes_project 11 9370442 9373362 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006176.1 MGP_C3HHeJ_G0005152.1 mouse_genomes_project 11 61490723 61492545 + Gm12273 lincRNA lincRNA MGP_C3HHeJ_T0100040.1 MGP_C3HHeJ_G0038234.1 mouse_genomes_project 11 91780691 91780828 - Gm22762 snoRNA snoRNA MGP_C3HHeJ_T0032862.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109114647 109214163 - MGP_C3HHeJ_P0032862 Bptf protein_coding protein_coding MGP_C3HHeJ_T0032863.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109114647 109214124 - MGP_C3HHeJ_P0032863 Bptf protein_coding unknown_likely_coding MGP_C3HHeJ_T0032864.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109114650 109214534 - MGP_C3HHeJ_P0032864 Bptf protein_coding protein_coding MGP_C3HHeJ_T0032865.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109114650 109214534 - MGP_C3HHeJ_P0032865 Bptf protein_coding protein_coding MGP_C3HHeJ_T0032866.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109117071 109125248 - Bptf protein_coding processed_transcript MGP_C3HHeJ_T0032867.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109124591 109128817 - Bptf protein_coding processed_transcript MGP_C3HHeJ_T0032868.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109128207 109132748 - MGP_C3HHeJ_P0032868 Bptf protein_coding protein_coding MGP_C3HHeJ_T0032869.1 MGP_C3HHeJ_G0019068.1 mouse_genomes_project 11 109140349 109147134 - MGP_C3HHeJ_P0032869 Bptf protein_coding protein_coding MGP_C3HHeJ_T0031695.1 MGP_C3HHeJ_G0018775.1 mouse_genomes_project 11 98405415 98409436 + MGP_C3HHeJ_P0031695 Scrn2 protein_coding protein_coding MGP_C3HHeJ_T0031696.1 MGP_C3HHeJ_G0018775.1 mouse_genomes_project 11 98405429 98406684 + Scrn2 protein_coding retained_intron MGP_C3HHeJ_T0031697.1 MGP_C3HHeJ_G0018775.1 mouse_genomes_project 11 98405478 98409428 + Scrn2 protein_coding retained_intron MGP_C3HHeJ_T0031698.1 MGP_C3HHeJ_G0018775.1 mouse_genomes_project 11 98405611 98407754 + MGP_C3HHeJ_P0031698 Scrn2 protein_coding protein_coding MGP_C3HHeJ_T0028724.1 MGP_C3HHeJ_G0018030.1 mouse_genomes_project 11 50914903 50932840 - MGP_C3HHeJ_P0028724 Ube2b protein_coding protein_coding MGP_C3HHeJ_T0028725.1 MGP_C3HHeJ_G0018030.1 mouse_genomes_project 11 50916073 50933118 - MGP_C3HHeJ_P0028725 Ube2b protein_coding protein_coding MGP_C3HHeJ_T0028726.1 MGP_C3HHeJ_G0018030.1 mouse_genomes_project 11 50929925 50932835 - Ube2b protein_coding processed_transcript MGP_C3HHeJ_T0028727.1 MGP_C3HHeJ_G0018030.1 mouse_genomes_project 11 50930001 50933118 - Ube2b protein_coding processed_transcript MGP_C3HHeJ_T0029289.1 MGP_C3HHeJ_G0018192.1 mouse_genomes_project 11 61001928 61005308 + MGP_C3HHeJ_P0029289 Mfap4 protein_coding protein_coding MGP_C3HHeJ_T0029290.1 MGP_C3HHeJ_G0018192.1 mouse_genomes_project 11 61001958 61004483 + MGP_C3HHeJ_P0029290 Mfap4 protein_coding protein_coding MGP_C3HHeJ_T0029291.1 MGP_C3HHeJ_G0018192.1 mouse_genomes_project 11 61001988 61003450 + Mfap4 protein_coding processed_transcript MGP_C3HHeJ_T0029292.1 MGP_C3HHeJ_G0018192.1 mouse_genomes_project 11 61002013 61005308 + Mfap4 protein_coding processed_transcript MGP_C3HHeJ_T0028572.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48911476 48952322 + MGP_C3HHeJ_P0028572 Tbc1d9b protein_coding protein_coding MGP_C3HHeJ_T0028573.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48911476 48953077 + MGP_C3HHeJ_P0028573 Tbc1d9b protein_coding protein_coding MGP_C3HHeJ_T0028574.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48911482 48921279 + Tbc1d9b protein_coding processed_transcript MGP_C3HHeJ_T0028575.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48916247 48921389 + Tbc1d9b protein_coding processed_transcript MGP_C3HHeJ_T0028576.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48926003 48931028 + Tbc1d9b protein_coding processed_transcript MGP_C3HHeJ_T0028577.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48927392 48932263 + Tbc1d9b protein_coding processed_transcript MGP_C3HHeJ_T0028578.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48928953 48930787 + Tbc1d9b protein_coding processed_transcript MGP_C3HHeJ_T0028579.1 MGP_C3HHeJ_G0017992.1 mouse_genomes_project 11 48942478 48944911 + Tbc1d9b protein_coding processed_transcript MGP_C3HHeJ_T0028395.1 MGP_C3HHeJ_G0017936.1 mouse_genomes_project 11 42954641 43003150 + MGP_C3HHeJ_P0028395 Rnf145 protein_coding protein_coding MGP_C3HHeJ_T0028396.1 MGP_C3HHeJ_G0017936.1 mouse_genomes_project 11 42954660 42960029 + Rnf145 protein_coding processed_transcript MGP_C3HHeJ_T0028397.1 MGP_C3HHeJ_G0017936.1 mouse_genomes_project 11 42955119 42991899 + MGP_C3HHeJ_P0028397 Rnf145 protein_coding protein_coding MGP_C3HHeJ_T0028398.1 MGP_C3HHeJ_G0017936.1 mouse_genomes_project 11 42955982 42985850 + Rnf145 protein_coding processed_transcript MGP_C3HHeJ_T0028399.1 MGP_C3HHeJ_G0017936.1 mouse_genomes_project 11 42993526 42996739 + Rnf145 protein_coding processed_transcript MGP_C3HHeJ_T0028400.1 MGP_C3HHeJ_G0017936.1 mouse_genomes_project 11 42996720 42998683 + Rnf145 protein_coding processed_transcript MGP_C3HHeJ_T0006094.1 MGP_C3HHeJ_G0005080.1 mouse_genomes_project 11 1173307 1181140 + Gm11959 lincRNA lincRNA MGP_C3HHeJ_T0009594.1 MGP_C3HHeJ_G0007727.1 mouse_genomes_project 11 52437721 52437792 + Mir6920 miRNA miRNA MGP_C3HHeJ_T0003229.1 MGP_C3HHeJ_G0002981.1 mouse_genomes_project 11 103005550 103008457 - antisense antisense MGP_C3HHeJ_T0016915.1 MGP_C3HHeJ_G0014906.1 mouse_genomes_project 11 170683 182271 + Gm11944 processed_transcript processed_transcript MGP_C3HHeJ_T0033693.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744067 122809334 + MGP_C3HHeJ_P0033693 Baiap2 protein_coding protein_coding MGP_C3HHeJ_T0033694.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744067 122809334 + MGP_C3HHeJ_P0033694 Baiap2 protein_coding protein_coding MGP_C3HHeJ_T0033695.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744067 122805173 + MGP_C3HHeJ_P0033695 Baiap2 protein_coding protein_coding MGP_C3HHeJ_T0033696.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744067 122805173 + MGP_C3HHeJ_P0033696 Baiap2 protein_coding protein_coding MGP_C3HHeJ_T0033697.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744067 122805173 + MGP_C3HHeJ_P0033697 Baiap2 protein_coding protein_coding MGP_C3HHeJ_T0033698.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744420 122761849 + Baiap2 protein_coding processed_transcript MGP_C3HHeJ_T0033699.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122744776 122783959 + Baiap2 protein_coding processed_transcript MGP_C3HHeJ_T0033700.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122761337 122761704 + Baiap2 protein_coding processed_transcript MGP_C3HHeJ_T0033701.1 MGP_C3HHeJ_G0019236.1 mouse_genomes_project 11 122800221 122804751 + Baiap2 protein_coding processed_transcript MGP_C3HHeJ_T0006256.1 MGP_C3HHeJ_G0005208.1 mouse_genomes_project 11 99324525 99335022 + Gm11630 lincRNA lincRNA MGP_C3HHeJ_T0029724.1 MGP_C3HHeJ_G0018288.1 mouse_genomes_project 11 69252756 69387226 - MGP_C3HHeJ_P0029724 Dnah2 protein_coding protein_coding MGP_C3HHeJ_T0029725.1 MGP_C3HHeJ_G0018288.1 mouse_genomes_project 11 69252756 69391779 - MGP_C3HHeJ_P0029725 Dnah2 protein_coding protein_coding MGP_C3HHeJ_T0029726.1 MGP_C3HHeJ_G0018288.1 mouse_genomes_project 11 69252940 69389189 - MGP_C3HHeJ_P0029726 Dnah2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0029727.1 MGP_C3HHeJ_G0018288.1 mouse_genomes_project 11 69296654 69297739 - Dnah2 protein_coding processed_transcript MGP_C3HHeJ_T0029728.1 MGP_C3HHeJ_G0018288.1 mouse_genomes_project 11 69352454 69391781 - Dnah2 protein_coding processed_transcript MGP_C3HHeJ_T0029729.1 MGP_C3HHeJ_G0018288.1 mouse_genomes_project 11 69357795 69358544 - Dnah2 protein_coding processed_transcript MGP_C3HHeJ_T0016969.1 MGP_C3HHeJ_G0014933.1 mouse_genomes_project 11 58294979 58315205 - 2310058D17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0028928.1 MGP_C3HHeJ_G0018079.1 mouse_genomes_project 11 54338450 54376725 + MGP_C3HHeJ_P0028928 Slc36a1 protein_coding protein_coding MGP_C3HHeJ_T0028929.1 MGP_C3HHeJ_G0018079.1 mouse_genomes_project 11 54338462 54349192 + Slc36a1 protein_coding processed_transcript MGP_C3HHeJ_T0028930.1 MGP_C3HHeJ_G0018079.1 mouse_genomes_project 11 54338474 54357016 + MGP_C3HHeJ_P0028930 Slc36a1 protein_coding protein_coding MGP_C3HHeJ_T0028931.1 MGP_C3HHeJ_G0018079.1 mouse_genomes_project 11 54338476 54374206 + MGP_C3HHeJ_P0028931 Slc36a1 protein_coding protein_coding MGP_C3HHeJ_T0028932.1 MGP_C3HHeJ_G0018079.1 mouse_genomes_project 11 54348724 54367585 + MGP_C3HHeJ_P0028932 Slc36a1 protein_coding protein_coding MGP_C3HHeJ_T0027905.1 MGP_C3HHeJ_G0017817.1 mouse_genomes_project 11 17315958 17424764 + MGP_C3HHeJ_P0027905 Spred2 protein_coding protein_coding MGP_C3HHeJ_T0027906.1 MGP_C3HHeJ_G0017817.1 mouse_genomes_project 11 17347240 17420491 + MGP_C3HHeJ_P0027906 Spred2 protein_coding protein_coding MGP_C3HHeJ_T0009658.1 MGP_C3HHeJ_G0007791.1 mouse_genomes_project 11 99702242 99702320 + Gm27399 miRNA miRNA MGP_C3HHeJ_T0028659.1 MGP_C3HHeJ_G0018012.1 mouse_genomes_project 11 49789903 49790969 + MGP_C3HHeJ_P0028659 Olfr1377 protein_coding protein_coding MGP_C3HHeJ_T0033182.1 MGP_C3HHeJ_G0019140.1 mouse_genomes_project 11 118064185 118090143 - MGP_C3HHeJ_P0033182 Hn1 protein_coding protein_coding MGP_C3HHeJ_T0033183.1 MGP_C3HHeJ_G0019140.1 mouse_genomes_project 11 118066289 118089904 - Hn1 protein_coding processed_transcript MGP_C3HHeJ_T0033184.1 MGP_C3HHeJ_G0019140.1 mouse_genomes_project 11 118066388 118090104 - Hn1 protein_coding processed_transcript MGP_C3HHeJ_T0033185.1 MGP_C3HHeJ_G0019140.1 mouse_genomes_project 11 118068821 118090127 - Hn1 protein_coding processed_transcript MGP_C3HHeJ_T0033186.1 MGP_C3HHeJ_G0019140.1 mouse_genomes_project 11 118071400 118089872 - Hn1 protein_coding processed_transcript MGP_C3HHeJ_T0033428.1 MGP_C3HHeJ_G0019181.1 mouse_genomes_project 11 119231780 119242640 + Aanat protein_coding processed_transcript MGP_C3HHeJ_T0033429.1 MGP_C3HHeJ_G0019181.1 mouse_genomes_project 11 119239039 119242987 + MGP_C3HHeJ_P0033429 Aanat protein_coding protein_coding MGP_C3HHeJ_T0033430.1 MGP_C3HHeJ_G0019181.1 mouse_genomes_project 11 119239039 119242852 + MGP_C3HHeJ_P0033430 Aanat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033431.1 MGP_C3HHeJ_G0019181.1 mouse_genomes_project 11 119240925 119242852 + MGP_C3HHeJ_P0033431 Aanat protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033432.1 MGP_C3HHeJ_G0019181.1 mouse_genomes_project 11 119241120 119241572 + Aanat protein_coding processed_transcript MGP_C3HHeJ_T0032702.1 MGP_C3HHeJ_G0019033.1 mouse_genomes_project 11 107158668 107159037 + MGP_C3HHeJ_P0032702 Gm10842 protein_coding protein_coding MGP_C3HHeJ_T0012534.1 MGP_C3HHeJ_G0010638.1 mouse_genomes_project 11 70025566 70025940 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006285.1 MGP_C3HHeJ_G0005231.1 mouse_genomes_project 11 116873220 116909484 - 4932435O22Rik lincRNA lincRNA MGP_C3HHeJ_T0006286.1 MGP_C3HHeJ_G0005231.1 mouse_genomes_project 11 116873457 116883588 - 4932435O22Rik lincRNA lincRNA MGP_C3HHeJ_T0016986.1 MGP_C3HHeJ_G0014942.1 mouse_genomes_project 11 72202270 72205583 + 4930563E22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016987.1 MGP_C3HHeJ_G0014942.1 mouse_genomes_project 11 72202304 72205577 + 4930563E22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0031987.1 MGP_C3HHeJ_G0018845.1 mouse_genomes_project 11 100916508 100926622 - MGP_C3HHeJ_P0031987 Krt28 protein_coding protein_coding MGP_C3HHeJ_T0028426.1 MGP_C3HHeJ_G0017945.1 mouse_genomes_project 11 44657936 44783396 - MGP_C3HHeJ_P0028426 Cyfip2 protein_coding protein_coding MGP_C3HHeJ_T0028427.1 MGP_C3HHeJ_G0017945.1 mouse_genomes_project 11 44657936 44782895 - MGP_C3HHeJ_P0028427 Cyfip2 protein_coding protein_coding MGP_C3HHeJ_T0028428.1 MGP_C3HHeJ_G0017945.1 mouse_genomes_project 11 44657941 44782831 - MGP_C3HHeJ_P0028428 Cyfip2 protein_coding protein_coding MGP_C3HHeJ_T0028429.1 MGP_C3HHeJ_G0017945.1 mouse_genomes_project 11 44660157 44736572 - MGP_C3HHeJ_P0028429 Cyfip2 protein_coding protein_coding MGP_C3HHeJ_T0028431.1 MGP_C3HHeJ_G0017945.1 mouse_genomes_project 11 44758858 44782757 - MGP_C3HHeJ_P0028431 Cyfip2 protein_coding protein_coding MGP_C3HHeJ_T0017007.1 MGP_C3HHeJ_G0014953.1 mouse_genomes_project 11 86502098 86543533 - 2610027K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017008.1 MGP_C3HHeJ_G0014953.1 mouse_genomes_project 11 86506229 86543547 - 2610027K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017009.1 MGP_C3HHeJ_G0014953.1 mouse_genomes_project 11 86506315 86514565 - 2610027K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012508.1 MGP_C3HHeJ_G0010612.1 mouse_genomes_project 11 59742639 59743601 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031332.1 MGP_C3HHeJ_G0018680.1 mouse_genomes_project 11 89740515 89762660 - MGP_C3HHeJ_P0031332 Akap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031333.1 MGP_C3HHeJ_G0018680.1 mouse_genomes_project 11 89740515 89762660 - MGP_C3HHeJ_P0031333 Akap1 protein_coding protein_coding MGP_C3HHeJ_T0031334.1 MGP_C3HHeJ_G0018680.1 mouse_genomes_project 11 89740515 89775310 - MGP_C3HHeJ_P0031334 Akap1 protein_coding protein_coding MGP_C3HHeJ_T0031335.1 MGP_C3HHeJ_G0018680.1 mouse_genomes_project 11 89741479 89774441 - MGP_C3HHeJ_P0031335 Akap1 protein_coding protein_coding MGP_C3HHeJ_T0031336.1 MGP_C3HHeJ_G0018680.1 mouse_genomes_project 11 89746433 89750962 - Akap1 protein_coding retained_intron MGP_C3HHeJ_T0031337.1 MGP_C3HHeJ_G0018680.1 mouse_genomes_project 11 89748388 89755664 - MGP_C3HHeJ_P0031337 Akap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009626.1 MGP_C3HHeJ_G0007759.1 mouse_genomes_project 11 75313955 75314046 + Mir212 miRNA miRNA MGP_C3HHeJ_T0033513.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120464380 120479119 - MGP_C3HHeJ_P0033513 Tmc6 protein_coding protein_coding MGP_C3HHeJ_T0033514.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120464380 120478128 - MGP_C3HHeJ_P0033514 Tmc6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033515.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120464452 120467466 - Tmc6 protein_coding retained_intron MGP_C3HHeJ_T0033516.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120468466 120471557 - MGP_C3HHeJ_P0033516 Tmc6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033517.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120473862 120479101 - MGP_C3HHeJ_P0033517 Tmc6 protein_coding protein_coding MGP_C3HHeJ_T0033518.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120474222 120478130 - MGP_C3HHeJ_P0033518 Tmc6 protein_coding protein_coding MGP_C3HHeJ_T0033519.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120477221 120479424 - MGP_C3HHeJ_P0033519 Tmc6 protein_coding protein_coding MGP_C3HHeJ_T0033520.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120477417 120480678 - MGP_C3HHeJ_P0033520 Tmc6 protein_coding protein_coding MGP_C3HHeJ_T0033521.1 MGP_C3HHeJ_G0019198.1 mouse_genomes_project 11 120477671 120479138 - MGP_C3HHeJ_P0033521 Tmc6 protein_coding protein_coding MGP_C3HHeJ_T0006287.1 MGP_C3HHeJ_G0005232.1 mouse_genomes_project 11 118201696 118212922 + Gm26613 lincRNA lincRNA MGP_C3HHeJ_T0033820.1 MGP_C3HHeJ_G0019263.1 mouse_genomes_project 11 123448694 123449311 + MGP_C3HHeJ_P0033820 Npb protein_coding protein_coding MGP_C3HHeJ_T0033821.1 MGP_C3HHeJ_G0019263.1 mouse_genomes_project 11 123448694 123449311 + MGP_C3HHeJ_P0033821 Npb protein_coding protein_coding MGP_C3HHeJ_T0033822.1 MGP_C3HHeJ_G0019263.1 mouse_genomes_project 11 123448722 123449251 + MGP_C3HHeJ_P0033822 Npb protein_coding protein_coding MGP_C3HHeJ_T0030043.1 MGP_C3HHeJ_G0018358.1 mouse_genomes_project 11 70544223 70545251 + MGP_C3HHeJ_P0030043 4930544D05Rik protein_coding protein_coding MGP_C3HHeJ_T0030044.1 MGP_C3HHeJ_G0018358.1 mouse_genomes_project 11 70544269 70545246 + 4930544D05Rik protein_coding retained_intron MGP_C3HHeJ_T0030045.1 MGP_C3HHeJ_G0018358.1 mouse_genomes_project 11 70544272 70545266 + MGP_C3HHeJ_P0030045 4930544D05Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030046.1 MGP_C3HHeJ_G0018358.1 mouse_genomes_project 11 70544285 70545253 + MGP_C3HHeJ_P0030046 4930544D05Rik protein_coding protein_coding MGP_C3HHeJ_T0009588.1 MGP_C3HHeJ_G0007721.1 mouse_genomes_project 11 48664391 48664506 + Gm23492 miRNA miRNA MGP_C3HHeJ_T0027460.1 MGP_C3HHeJ_G0017714.1 mouse_genomes_project 11 388521 391188 + Selm protein_coding processed_transcript MGP_C3HHeJ_T0027461.1 MGP_C3HHeJ_G0017714.1 mouse_genomes_project 11 388539 390970 + Selm protein_coding processed_transcript MGP_C3HHeJ_T0027462.1 MGP_C3HHeJ_G0017714.1 mouse_genomes_project 11 388704 391191 + MGP_C3HHeJ_P0027462 Selm protein_coding protein_coding MGP_C3HHeJ_T0003123.1 MGP_C3HHeJ_G0002899.1 mouse_genomes_project 11 61046275 61047098 + Gm12272 antisense antisense MGP_C3HHeJ_T0009680.1 MGP_C3HHeJ_G0007813.1 mouse_genomes_project 11 119730235 119730345 + Mir6516 miRNA miRNA MGP_C3HHeJ_T0006151.1 MGP_C3HHeJ_G0005130.1 mouse_genomes_project 11 43025289 43030091 + 4930597A21Rik lincRNA lincRNA MGP_C3HHeJ_T0100027.1 MGP_C3HHeJ_G0038221.1 mouse_genomes_project 11 72626021 72626763 - Gm24143 snoRNA snoRNA MGP_C3HHeJ_T0029144.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59349164 59429276 - MGP_C3HHeJ_P0029144 Pemt protein_coding protein_coding MGP_C3HHeJ_T0029145.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59349168 59350064 - Pemt protein_coding processed_transcript MGP_C3HHeJ_T0029146.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59349381 59417091 - Pemt protein_coding processed_transcript MGP_C3HHeJ_T0029147.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59349398 59420674 - MGP_C3HHeJ_P0029147 Pemt protein_coding protein_coding MGP_C3HHeJ_T0029148.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59352875 59429330 - MGP_C3HHeJ_P0029148 Pemt protein_coding protein_coding MGP_C3HHeJ_T0029149.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59355589 59400960 - Pemt protein_coding processed_transcript MGP_C3HHeJ_T0029150.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59355609 59362965 - Pemt protein_coding processed_transcript MGP_C3HHeJ_T0029151.1 MGP_C3HHeJ_G0018164.1 mouse_genomes_project 11 59427377 59429326 - Pemt protein_coding processed_transcript MGP_C3HHeJ_T0030540.1 MGP_C3HHeJ_G0018487.1 mouse_genomes_project 11 76622061 76629781 + MGP_C3HHeJ_P0030540 Timm22 protein_coding protein_coding MGP_C3HHeJ_T0030541.1 MGP_C3HHeJ_G0018487.1 mouse_genomes_project 11 76622252 76631744 + MGP_C3HHeJ_P0030541 Timm22 protein_coding protein_coding MGP_C3HHeJ_T0030542.1 MGP_C3HHeJ_G0018487.1 mouse_genomes_project 11 76622300 76629534 + MGP_C3HHeJ_P0030542 Timm22 protein_coding protein_coding MGP_C3HHeJ_T0030543.1 MGP_C3HHeJ_G0018487.1 mouse_genomes_project 11 76622314 76625383 + MGP_C3HHeJ_P0030543 Timm22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033715.1 MGP_C3HHeJ_G0019239.1 mouse_genomes_project 11 122895313 122903565 - MGP_C3HHeJ_P0033715 Enthd2 protein_coding protein_coding MGP_C3HHeJ_T0033716.1 MGP_C3HHeJ_G0019239.1 mouse_genomes_project 11 122895313 122903565 - MGP_C3HHeJ_P0033716 Enthd2 protein_coding protein_coding MGP_C3HHeJ_T0033717.1 MGP_C3HHeJ_G0019239.1 mouse_genomes_project 11 122895313 122903565 - MGP_C3HHeJ_P0033717 Enthd2 protein_coding protein_coding MGP_C3HHeJ_T0033718.1 MGP_C3HHeJ_G0019239.1 mouse_genomes_project 11 122898942 122902219 - Enthd2 protein_coding processed_transcript MGP_C3HHeJ_T0033719.1 MGP_C3HHeJ_G0019239.1 mouse_genomes_project 11 122900363 122902094 - Enthd2 protein_coding processed_transcript MGP_C3HHeJ_T0033720.1 MGP_C3HHeJ_G0019239.1 mouse_genomes_project 11 122901732 122903534 - Enthd2 protein_coding processed_transcript MGP_C3HHeJ_T0012517.1 MGP_C3HHeJ_G0010621.1 mouse_genomes_project 11 61514462 61514847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101666.1 MGP_C3HHeJ_G0039632.1 mouse_genomes_project 11 119394980 119404261 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101650.1 MGP_C3HHeJ_G0039616.1 mouse_genomes_project 11 84303041 84305274 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0031565.1 MGP_C3HHeJ_G0018738.1 mouse_genomes_project 11 96697397 96783064 + MGP_C3HHeJ_P0031565 Spop protein_coding protein_coding MGP_C3HHeJ_T0031566.1 MGP_C3HHeJ_G0018738.1 mouse_genomes_project 11 96697455 96761653 + MGP_C3HHeJ_P0031566 Spop protein_coding protein_coding MGP_C3HHeJ_T0031567.1 MGP_C3HHeJ_G0018738.1 mouse_genomes_project 11 96697544 96761632 + MGP_C3HHeJ_P0031567 Spop protein_coding protein_coding MGP_C3HHeJ_T0031568.1 MGP_C3HHeJ_G0018738.1 mouse_genomes_project 11 96697544 96783064 + MGP_C3HHeJ_P0031568 Spop protein_coding protein_coding MGP_C3HHeJ_T0031569.1 MGP_C3HHeJ_G0018738.1 mouse_genomes_project 11 96761636 96779962 + Spop protein_coding processed_transcript MGP_C3HHeJ_T0029332.1 MGP_C3HHeJ_G0018198.1 mouse_genomes_project 11 61211919 61214687 + Fam83g protein_coding processed_transcript MGP_C3HHeJ_T0029333.1 MGP_C3HHeJ_G0018198.1 mouse_genomes_project 11 61212247 61237796 + MGP_C3HHeJ_P0029333 Fam83g protein_coding protein_coding MGP_C3HHeJ_T0028506.1 MGP_C3HHeJ_G0017974.1 mouse_genomes_project 11 47849426 47871019 - MGP_C3HHeJ_P0028506 Btnl9 protein_coding protein_coding MGP_C3HHeJ_T0028507.1 MGP_C3HHeJ_G0017974.1 mouse_genomes_project 11 47852897 47870905 - MGP_C3HHeJ_P0028507 Btnl9 protein_coding protein_coding MGP_C3HHeJ_T0028508.1 MGP_C3HHeJ_G0017974.1 mouse_genomes_project 11 47852897 47871078 - MGP_C3HHeJ_P0028508 Btnl9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028509.1 MGP_C3HHeJ_G0017974.1 mouse_genomes_project 11 47853165 47854519 - Btnl9 protein_coding retained_intron MGP_C3HHeJ_T0028510.1 MGP_C3HHeJ_G0017974.1 mouse_genomes_project 11 47858669 47870897 - MGP_C3HHeJ_P0028510 Btnl9 protein_coding protein_coding MGP_C3HHeJ_T0028511.1 MGP_C3HHeJ_G0017974.1 mouse_genomes_project 11 47866156 47870927 - Btnl9 protein_coding processed_transcript MGP_C3HHeJ_T0003204.1 MGP_C3HHeJ_G0002963.1 mouse_genomes_project 11 97327258 97329596 + Gm29202 antisense antisense MGP_C3HHeJ_T0012454.1 MGP_C3HHeJ_G0010558.1 mouse_genomes_project 11 38812187 38812653 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012647.1 MGP_C3HHeJ_G0010751.1 mouse_genomes_project 11 117134849 117135151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028232.1 MGP_C3HHeJ_G0017889.1 mouse_genomes_project 11 30280817 30362086 + MGP_C3HHeJ_P0028232 Sh3pxd2b protein_coding protein_coding MGP_C3HHeJ_T0028233.1 MGP_C3HHeJ_G0017889.1 mouse_genomes_project 11 30280837 30324092 + Sh3pxd2b protein_coding retained_intron MGP_C3HHeJ_T0028234.1 MGP_C3HHeJ_G0017889.1 mouse_genomes_project 11 30280865 30361953 + MGP_C3HHeJ_P0028234 Sh3pxd2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0027945.1 MGP_C3HHeJ_G0017827.1 mouse_genomes_project 11 18782350 18831258 - MGP_C3HHeJ_P0027945 Ugp2 protein_coding protein_coding MGP_C3HHeJ_T0027946.1 MGP_C3HHeJ_G0017827.1 mouse_genomes_project 11 18782885 18832652 - MGP_C3HHeJ_P0027946 Ugp2 protein_coding protein_coding MGP_C3HHeJ_T0027947.1 MGP_C3HHeJ_G0017827.1 mouse_genomes_project 11 18783136 18791105 - Ugp2 protein_coding processed_transcript MGP_C3HHeJ_T0027948.1 MGP_C3HHeJ_G0017827.1 mouse_genomes_project 11 18783152 18784715 - Ugp2 protein_coding processed_transcript MGP_C3HHeJ_T0031630.1 MGP_C3HHeJ_G0018761.1 mouse_genomes_project 11 97660259 97663647 + MGP_C3HHeJ_P0031630 Hoxb4 protein_coding protein_coding MGP_C3HHeJ_T0031520.1 MGP_C3HHeJ_G0018727.1 mouse_genomes_project 11 96238487 96239342 + MGP_C3HHeJ_P0031520 Hils1 protein_coding protein_coding MGP_C3HHeJ_T0033595.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121229775 121242962 + MGP_C3HHeJ_P0033595 Engase protein_coding protein_coding MGP_C3HHeJ_T0033596.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121229887 121232200 + MGP_C3HHeJ_P0033596 Engase protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033597.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121229892 121236817 + MGP_C3HHeJ_P0033597 Engase protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033598.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121229906 121242840 + MGP_C3HHeJ_P0033598 Engase protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033599.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121229918 121241526 + MGP_C3HHeJ_P0033599 Engase protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033600.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121229929 121242962 + MGP_C3HHeJ_P0033600 Engase protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033601.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121234874 121236699 + Engase protein_coding retained_intron MGP_C3HHeJ_T0033602.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121236141 121241526 + Engase protein_coding retained_intron MGP_C3HHeJ_T0033603.1 MGP_C3HHeJ_G0019218.1 mouse_genomes_project 11 121238242 121241262 + MGP_C3HHeJ_P0033603 Engase protein_coding protein_coding MGP_C3HHeJ_T0012629.1 MGP_C3HHeJ_G0010733.1 mouse_genomes_project 11 107036647 107037687 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029017.1 MGP_C3HHeJ_G0018113.1 mouse_genomes_project 11 57837888 57838975 - MGP_C3HHeJ_P0029017 Olfr224 protein_coding protein_coding MGP_C3HHeJ_T0030354.1 MGP_C3HHeJ_G0018447.1 mouse_genomes_project 11 74481726 74698016 - MGP_C3HHeJ_P0030354 Rap1gap2 protein_coding protein_coding MGP_C3HHeJ_T0030355.1 MGP_C3HHeJ_G0018447.1 mouse_genomes_project 11 74481853 74697988 - MGP_C3HHeJ_P0030355 Rap1gap2 protein_coding protein_coding MGP_C3HHeJ_T0030356.1 MGP_C3HHeJ_G0018447.1 mouse_genomes_project 11 74481854 74511358 - Rap1gap2 protein_coding processed_transcript MGP_C3HHeJ_T0030357.1 MGP_C3HHeJ_G0018447.1 mouse_genomes_project 11 74484307 74628796 - MGP_C3HHeJ_P0030357 Rap1gap2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030358.1 MGP_C3HHeJ_G0018447.1 mouse_genomes_project 11 74541078 74697954 - MGP_C3HHeJ_P0030358 Rap1gap2 protein_coding protein_coding MGP_C3HHeJ_T0032033.1 MGP_C3HHeJ_G0018889.1 mouse_genomes_project 11 101727175 101731764 - Krt32 protein_coding processed_transcript MGP_C3HHeJ_T0032034.1 MGP_C3HHeJ_G0018889.1 mouse_genomes_project 11 101727184 101734549 - MGP_C3HHeJ_P0032034 Krt32 protein_coding protein_coding MGP_C3HHeJ_T0031130.1 MGP_C3HHeJ_G0018633.1 mouse_genomes_project 11 85856229 85866687 + MGP_C3HHeJ_P0031130 1700125H20Rik protein_coding protein_coding MGP_C3HHeJ_T0031131.1 MGP_C3HHeJ_G0018633.1 mouse_genomes_project 11 85856921 85866687 + MGP_C3HHeJ_P0031131 1700125H20Rik protein_coding protein_coding MGP_C3HHeJ_T0033993.1 MGP_C3HHeJ_G0019295.1 mouse_genomes_project 11 124253704 124286695 - MGP_C3HHeJ_P0033993 Rab40b protein_coding protein_coding MGP_C3HHeJ_T0033994.1 MGP_C3HHeJ_G0019295.1 mouse_genomes_project 11 124255581 124286509 - Rab40b protein_coding processed_transcript MGP_C3HHeJ_T0033995.1 MGP_C3HHeJ_G0019295.1 mouse_genomes_project 11 124257170 124286665 - Rab40b protein_coding processed_transcript MGP_C3HHeJ_T0033996.1 MGP_C3HHeJ_G0019295.1 mouse_genomes_project 11 124257189 124286674 - Rab40b protein_coding processed_transcript MGP_C3HHeJ_T0006236.1 MGP_C3HHeJ_G0005194.1 mouse_genomes_project 11 89646662 89650734 - lincRNA lincRNA MGP_C3HHeJ_T0003245.1 MGP_C3HHeJ_G0002997.1 mouse_genomes_project 11 107195793 107199491 - 1700052K11Rik antisense antisense MGP_C3HHeJ_T0012551.1 MGP_C3HHeJ_G0010655.1 mouse_genomes_project 11 75204241 75204847 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030251.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 72983258 73016664 + MGP_C3HHeJ_P0030251 Atp2a3 protein_coding protein_coding MGP_C3HHeJ_T0030252.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 72983258 73016664 + MGP_C3HHeJ_P0030252 Atp2a3 protein_coding protein_coding MGP_C3HHeJ_T0030253.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 72983258 73016664 + MGP_C3HHeJ_P0030253 Atp2a3 protein_coding protein_coding MGP_C3HHeJ_T0030254.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 72983258 73016665 + MGP_C3HHeJ_P0030254 Atp2a3 protein_coding protein_coding MGP_C3HHeJ_T0030255.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 72983258 73016665 + MGP_C3HHeJ_P0030255 Atp2a3 protein_coding protein_coding MGP_C3HHeJ_T0030256.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 72983379 72992832 + Atp2a3 protein_coding retained_intron MGP_C3HHeJ_T0030257.1 MGP_C3HHeJ_G0018400.1 mouse_genomes_project 11 73004166 73005615 + Atp2a3 protein_coding processed_transcript MGP_C3HHeJ_T0097995.1 MGP_C3HHeJ_G0036207.1 mouse_genomes_project 11 72267015 72267131 + n-R5s70 rRNA rRNA MGP_C3HHeJ_T0006200.1 MGP_C3HHeJ_G0005171.1 mouse_genomes_project 11 73039452 73042442 - 4732414G09Rik lincRNA lincRNA MGP_C3HHeJ_T0006201.1 MGP_C3HHeJ_G0005171.1 mouse_genomes_project 11 73039452 73042405 - 4732414G09Rik lincRNA lincRNA MGP_C3HHeJ_T0012530.1 MGP_C3HHeJ_G0010634.1 mouse_genomes_project 11 69475417 69475806 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003148.1 MGP_C3HHeJ_G0002919.1 mouse_genomes_project 11 68362825 68366542 - Ccdc42os antisense antisense MGP_C3HHeJ_T0009630.1 MGP_C3HHeJ_G0007763.1 mouse_genomes_project 11 75707886 75707969 + Mir3971 miRNA miRNA MGP_C3HHeJ_T0029560.1 MGP_C3HHeJ_G0018252.1 mouse_genomes_project 11 67974115 68158884 - MGP_C3HHeJ_P0029560 Ntn1 protein_coding protein_coding MGP_C3HHeJ_T0029561.1 MGP_C3HHeJ_G0018252.1 mouse_genomes_project 11 67974115 68173435 - MGP_C3HHeJ_P0029561 Ntn1 protein_coding protein_coding MGP_C3HHeJ_T0029562.1 MGP_C3HHeJ_G0018252.1 mouse_genomes_project 11 68157701 68159070 - MGP_C3HHeJ_P0029562 Ntn1 protein_coding protein_coding MGP_C3HHeJ_T0027969.1 MGP_C3HHeJ_G0017832.1 mouse_genomes_project 11 20009455 20017240 + MGP_C3HHeJ_P0027969 Tmem17 protein_coding protein_coding MGP_C3HHeJ_T0033140.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968475 117977398 + MGP_C3HHeJ_P0033140 Ict1 protein_coding protein_coding MGP_C3HHeJ_T0033141.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968477 117977386 + MGP_C3HHeJ_P0033141 Ict1 protein_coding protein_coding MGP_C3HHeJ_T0033142.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968480 117975643 + MGP_C3HHeJ_P0033142 Ict1 protein_coding protein_coding MGP_C3HHeJ_T0033143.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968490 117974777 + Ict1 protein_coding retained_intron MGP_C3HHeJ_T0033144.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968494 117974985 + MGP_C3HHeJ_P0033144 Ict1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033145.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968500 117975483 + Ict1 protein_coding processed_transcript MGP_C3HHeJ_T0033146.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968505 117974975 + Ict1 protein_coding retained_intron MGP_C3HHeJ_T0033147.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117968545 117975448 + Ict1 protein_coding processed_transcript MGP_C3HHeJ_T0033148.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117974584 117975443 + Ict1 protein_coding retained_intron MGP_C3HHeJ_T0033149.1 MGP_C3HHeJ_G0019133.1 mouse_genomes_project 11 117974883 117975632 + Ict1 protein_coding retained_intron MGP_C3HHeJ_T0012455.1 MGP_C3HHeJ_G0010559.1 mouse_genomes_project 11 38883419 38884628 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029051.1 MGP_C3HHeJ_G0018135.1 mouse_genomes_project 11 58254256 58267836 - MGP_C3HHeJ_P0029051 protein_coding protein_coding MGP_C3HHeJ_T0028810.1 MGP_C3HHeJ_G0018051.1 mouse_genomes_project 11 52641061 52657272 - Il4 protein_coding processed_transcript MGP_C3HHeJ_T0028811.1 MGP_C3HHeJ_G0018051.1 mouse_genomes_project 11 52652507 52658717 - MGP_C3HHeJ_P0028811 Il4 protein_coding protein_coding MGP_C3HHeJ_T0028812.1 MGP_C3HHeJ_G0018051.1 mouse_genomes_project 11 52652507 52657386 - MGP_C3HHeJ_P0028812 Il4 protein_coding protein_coding MGP_C3HHeJ_T0028813.1 MGP_C3HHeJ_G0018051.1 mouse_genomes_project 11 52652507 52658400 - MGP_C3HHeJ_P0028813 Il4 protein_coding protein_coding MGP_C3HHeJ_T0030982.1 MGP_C3HHeJ_G0018592.1 mouse_genomes_project 11 83562221 83575168 - MGP_C3HHeJ_P0030982 protein_coding protein_coding MGP_C3HHeJ_T0003134.1 MGP_C3HHeJ_G0002909.1 mouse_genomes_project 11 62545276 62545931 - Cdrt4os2 antisense antisense MGP_C3HHeJ_T0003284.1 MGP_C3HHeJ_G0003029.1 mouse_genomes_project 11 120587209 120605324 + Gm11725 antisense antisense MGP_C3HHeJ_T0032002.1 MGP_C3HHeJ_G0018858.1 mouse_genomes_project 11 101154100 101155914 - MGP_C3HHeJ_P0032002 Krtap1-3 protein_coding protein_coding MGP_C3HHeJ_T0006240.1 MGP_C3HHeJ_G0005198.1 mouse_genomes_project 11 91087116 91095817 - Gm11494 lincRNA lincRNA MGP_C3HHeJ_T0029699.1 MGP_C3HHeJ_G0018280.1 mouse_genomes_project 11 69148959 69155738 + MGP_C3HHeJ_P0029699 Kcnab3 protein_coding protein_coding MGP_C3HHeJ_T0029700.1 MGP_C3HHeJ_G0018280.1 mouse_genomes_project 11 69150567 69155738 + Kcnab3 protein_coding retained_intron MGP_C3HHeJ_T0029701.1 MGP_C3HHeJ_G0018280.1 mouse_genomes_project 11 69153025 69154839 + Kcnab3 protein_coding retained_intron MGP_C3HHeJ_T0032184.1 MGP_C3HHeJ_G0018928.1 mouse_genomes_project 11 102802607 102804724 + MGP_C3HHeJ_P0032184 Hsd17b1 protein_coding protein_coding MGP_C3HHeJ_T0012535.1 MGP_C3HHeJ_G0010639.1 mouse_genomes_project 11 70266076 70266720 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032639.1 MGP_C3HHeJ_G0019019.1 mouse_genomes_project 11 105663699 105686184 - MGP_C3HHeJ_P0032639 Wnt9b protein_coding protein_coding MGP_C3HHeJ_T0101667.1 MGP_C3HHeJ_G0039633.1 mouse_genomes_project 11 123620555 123624096 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029341.1 MGP_C3HHeJ_G0018201.1 mouse_genomes_project 11 61408441 61468538 - MGP_C3HHeJ_P0029341 Akap10 protein_coding protein_coding MGP_C3HHeJ_T0029342.1 MGP_C3HHeJ_G0018201.1 mouse_genomes_project 11 61408806 61415587 - Akap10 protein_coding processed_transcript MGP_C3HHeJ_T0029343.1 MGP_C3HHeJ_G0018201.1 mouse_genomes_project 11 61410150 61468296 - MGP_C3HHeJ_P0029343 Akap10 protein_coding protein_coding MGP_C3HHeJ_T0029344.1 MGP_C3HHeJ_G0018201.1 mouse_genomes_project 11 61429727 61468512 - MGP_C3HHeJ_P0029344 Akap10 protein_coding protein_coding MGP_C3HHeJ_T0029345.1 MGP_C3HHeJ_G0018201.1 mouse_genomes_project 11 61460211 61468493 - Akap10 protein_coding processed_transcript MGP_C3HHeJ_T0101645.1 MGP_C3HHeJ_G0039611.1 mouse_genomes_project 11 74372600 74373630 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100049.1 MGP_C3HHeJ_G0038243.1 mouse_genomes_project 11 106203032 106203165 - Gm22743 snoRNA snoRNA MGP_C3HHeJ_T0100043.1 MGP_C3HHeJ_G0038237.1 mouse_genomes_project 11 99215385 99215480 - Gm27326 snoRNA snoRNA MGP_C3HHeJ_T0030243.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72813564 72870740 + Zzef1 protein_coding retained_intron MGP_C3HHeJ_T0030244.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72813564 72949447 + MGP_C3HHeJ_P0030244 Zzef1 protein_coding protein_coding MGP_C3HHeJ_T0030245.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72813592 72949445 + MGP_C3HHeJ_P0030245 Zzef1 protein_coding protein_coding MGP_C3HHeJ_T0030246.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72813635 72940208 + MGP_C3HHeJ_P0030246 Zzef1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030247.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72861454 72870105 + Zzef1 protein_coding processed_transcript MGP_C3HHeJ_T0030248.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72934631 72948145 + Zzef1 protein_coding retained_intron MGP_C3HHeJ_T0030249.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72937278 72941231 + Zzef1 protein_coding retained_intron MGP_C3HHeJ_T0030250.1 MGP_C3HHeJ_G0018399.1 mouse_genomes_project 11 72943177 72949447 + Zzef1 protein_coding retained_intron MGP_C3HHeJ_T0012470.1 MGP_C3HHeJ_G0010574.1 mouse_genomes_project 11 47093325 47093986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009622.1 MGP_C3HHeJ_G0007755.1 mouse_genomes_project 11 72381372 72381481 + Mir6338 miRNA miRNA MGP_C3HHeJ_T0027567.1 MGP_C3HHeJ_G0017740.1 mouse_genomes_project 11 1614107 1618186 - MGP_C3HHeJ_P0027567 Uqcr10 protein_coding protein_coding MGP_C3HHeJ_T0027568.1 MGP_C3HHeJ_G0017740.1 mouse_genomes_project 11 1614109 1618178 - Uqcr10 protein_coding processed_transcript MGP_C3HHeJ_T0027569.1 MGP_C3HHeJ_G0017740.1 mouse_genomes_project 11 1614116 1617897 - Uqcr10 protein_coding processed_transcript MGP_C3HHeJ_T0029913.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69895191 69900417 - MGP_C3HHeJ_P0029913 Acadvl protein_coding protein_coding MGP_C3HHeJ_T0029914.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69895197 69895920 - Acadvl protein_coding retained_intron MGP_C3HHeJ_T0029915.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69895252 69900396 - MGP_C3HHeJ_P0029915 Acadvl protein_coding protein_coding MGP_C3HHeJ_T0029916.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69896230 69897583 - Acadvl protein_coding retained_intron MGP_C3HHeJ_T0029917.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69898197 69900386 - Acadvl protein_coding retained_intron MGP_C3HHeJ_T0029918.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69899051 69900420 - Acadvl protein_coding retained_intron MGP_C3HHeJ_T0029919.1 MGP_C3HHeJ_G0018331.1 mouse_genomes_project 11 69899126 69900408 - Acadvl protein_coding retained_intron MGP_C3HHeJ_T0030737.1 MGP_C3HHeJ_G0018526.1 mouse_genomes_project 11 78598455 78601360 + MGP_C3HHeJ_P0030737 BC030499 protein_coding protein_coding MGP_C3HHeJ_T0030738.1 MGP_C3HHeJ_G0018526.1 mouse_genomes_project 11 78598506 78602957 + BC030499 protein_coding retained_intron MGP_C3HHeJ_T0030739.1 MGP_C3HHeJ_G0018526.1 mouse_genomes_project 11 78598508 78601433 + BC030499 protein_coding retained_intron MGP_C3HHeJ_T0030740.1 MGP_C3HHeJ_G0018526.1 mouse_genomes_project 11 78598543 78601448 + BC030499 protein_coding retained_intron MGP_C3HHeJ_T0030741.1 MGP_C3HHeJ_G0018526.1 mouse_genomes_project 11 78599170 78599778 + BC030499 protein_coding retained_intron MGP_C3HHeJ_T0030742.1 MGP_C3HHeJ_G0018526.1 mouse_genomes_project 11 78601421 78604420 + BC030499 protein_coding retained_intron MGP_C3HHeJ_T0006152.1 MGP_C3HHeJ_G0005131.1 mouse_genomes_project 11 43552355 43567285 - Gm12159 lincRNA lincRNA MGP_C3HHeJ_T0032990.1 MGP_C3HHeJ_G0019096.1 mouse_genomes_project 11 112656368 112806706 + MGP_C3HHeJ_P0032990 Map2k6 protein_coding protein_coding MGP_C3HHeJ_T0032991.1 MGP_C3HHeJ_G0019096.1 mouse_genomes_project 11 112656368 112793786 + MGP_C3HHeJ_P0032991 Map2k6 protein_coding protein_coding MGP_C3HHeJ_T0032992.1 MGP_C3HHeJ_G0019096.1 mouse_genomes_project 11 112656505 112793786 + Map2k6 protein_coding processed_transcript MGP_C3HHeJ_T0032993.1 MGP_C3HHeJ_G0019096.1 mouse_genomes_project 11 112754448 112778956 + Map2k6 protein_coding processed_transcript MGP_C3HHeJ_T0032994.1 MGP_C3HHeJ_G0019096.1 mouse_genomes_project 11 112757362 112777360 + Map2k6 protein_coding processed_transcript MGP_C3HHeJ_T0029831.1 MGP_C3HHeJ_G0018316.1 mouse_genomes_project 11 69753376 69754711 - MGP_C3HHeJ_P0029831 Tmem95 protein_coding protein_coding MGP_C3HHeJ_T0003091.1 MGP_C3HHeJ_G0002872.1 mouse_genomes_project 11 50973627 50974296 - Gm12205 antisense antisense MGP_C3HHeJ_T0003185.1 MGP_C3HHeJ_G0002949.1 mouse_genomes_project 11 87861755 87868053 - Gm11491 antisense antisense MGP_C3HHeJ_T0003186.1 MGP_C3HHeJ_G0002949.1 mouse_genomes_project 11 87862944 87868106 - Gm11491 antisense antisense MGP_C3HHeJ_T0032632.1 MGP_C3HHeJ_G0019016.1 mouse_genomes_project 11 105562412 105570183 - MGP_C3HHeJ_P0032632 Lyzl6 protein_coding protein_coding MGP_C3HHeJ_T0032633.1 MGP_C3HHeJ_G0019016.1 mouse_genomes_project 11 105562415 105570194 - MGP_C3HHeJ_P0032633 Lyzl6 protein_coding protein_coding MGP_C3HHeJ_T0032634.1 MGP_C3HHeJ_G0019016.1 mouse_genomes_project 11 105562418 105566333 - Lyzl6 protein_coding processed_transcript MGP_C3HHeJ_T0003065.1 MGP_C3HHeJ_G0002848.1 mouse_genomes_project 11 21666591 21682839 - Gm12064 antisense antisense MGP_C3HHeJ_T0028432.1 MGP_C3HHeJ_G0017947.1 mouse_genomes_project 11 44796374 44860968 - MGP_C3HHeJ_P0028432 Itk protein_coding protein_coding MGP_C3HHeJ_T0028433.1 MGP_C3HHeJ_G0017947.1 mouse_genomes_project 11 44796374 44860990 - MGP_C3HHeJ_P0028433 Itk protein_coding protein_coding MGP_C3HHeJ_T0028434.1 MGP_C3HHeJ_G0017947.1 mouse_genomes_project 11 44816262 44860932 - MGP_C3HHeJ_P0028434 Itk protein_coding protein_coding MGP_C3HHeJ_T0028435.1 MGP_C3HHeJ_G0017947.1 mouse_genomes_project 11 44834842 44860936 - Itk protein_coding retained_intron MGP_C3HHeJ_T0003066.1 MGP_C3HHeJ_G0002849.1 mouse_genomes_project 11 21728351 21740624 - 4930538E20Rik antisense antisense MGP_C3HHeJ_T0003067.1 MGP_C3HHeJ_G0002849.1 mouse_genomes_project 11 21734696 21740581 - 4930538E20Rik antisense antisense MGP_C3HHeJ_T0016971.1 MGP_C3HHeJ_G0014935.1 mouse_genomes_project 11 58852458 58860029 + 4933439C10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016972.1 MGP_C3HHeJ_G0014935.1 mouse_genomes_project 11 58852481 58857727 + 4933439C10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016973.1 MGP_C3HHeJ_G0014935.1 mouse_genomes_project 11 58852893 58853649 + 4933439C10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016974.1 MGP_C3HHeJ_G0014935.1 mouse_genomes_project 11 58852949 58856896 + 4933439C10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016975.1 MGP_C3HHeJ_G0014935.1 mouse_genomes_project 11 58853464 58856896 + 4933439C10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016976.1 MGP_C3HHeJ_G0014935.1 mouse_genomes_project 11 58854438 58857727 + 4933439C10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0033117.1 MGP_C3HHeJ_G0019126.1 mouse_genomes_project 11 117824651 117833319 - MGP_C3HHeJ_P0033117 Fdxr protein_coding unknown_likely_coding MGP_C3HHeJ_T0033118.1 MGP_C3HHeJ_G0019126.1 mouse_genomes_project 11 117824657 117833553 - Fdxr protein_coding processed_transcript MGP_C3HHeJ_T0033119.1 MGP_C3HHeJ_G0019126.1 mouse_genomes_project 11 117824657 117833689 - MGP_C3HHeJ_P0033119 Fdxr protein_coding protein_coding MGP_C3HHeJ_T0033120.1 MGP_C3HHeJ_G0019126.1 mouse_genomes_project 11 117824981 117825648 - Fdxr protein_coding processed_transcript MGP_C3HHeJ_T0033121.1 MGP_C3HHeJ_G0019126.1 mouse_genomes_project 11 117828465 117833363 - Fdxr protein_coding processed_transcript MGP_C3HHeJ_T0029811.1 MGP_C3HHeJ_G0018309.1 mouse_genomes_project 11 69675541 69677563 - MGP_C3HHeJ_P0029811 Tmem102 protein_coding protein_coding MGP_C3HHeJ_T0031540.1 MGP_C3HHeJ_G0018733.1 mouse_genomes_project 11 96413971 96419783 - MGP_C3HHeJ_P0031540 Dlx4 protein_coding protein_coding MGP_C3HHeJ_T0031541.1 MGP_C3HHeJ_G0018733.1 mouse_genomes_project 11 96417146 96419321 - Dlx4 protein_coding processed_transcript MGP_C3HHeJ_T0009587.1 MGP_C3HHeJ_G0007720.1 mouse_genomes_project 11 48537479 48537556 + Gm23813 miRNA miRNA MGP_C3HHeJ_T0027991.1 MGP_C3HHeJ_G0017839.1 mouse_genomes_project 11 20521348 20535835 + MGP_C3HHeJ_P0027991 Fam161a protein_coding protein_coding MGP_C3HHeJ_T0027992.1 MGP_C3HHeJ_G0017839.1 mouse_genomes_project 11 20522258 20545705 + MGP_C3HHeJ_P0027992 Fam161a protein_coding protein_coding MGP_C3HHeJ_T0027993.1 MGP_C3HHeJ_G0017839.1 mouse_genomes_project 11 20522282 20539340 + MGP_C3HHeJ_P0027993 Fam161a protein_coding protein_coding MGP_C3HHeJ_T0027994.1 MGP_C3HHeJ_G0017839.1 mouse_genomes_project 11 20527196 20539330 + MGP_C3HHeJ_P0027994 Fam161a protein_coding protein_coding MGP_C3HHeJ_T0027995.1 MGP_C3HHeJ_G0017839.1 mouse_genomes_project 11 20536068 20547004 + MGP_C3HHeJ_P0027995 Fam161a protein_coding protein_coding MGP_C3HHeJ_T0027996.1 MGP_C3HHeJ_G0017839.1 mouse_genomes_project 11 20536154 20539329 + MGP_C3HHeJ_P0027996 Fam161a protein_coding protein_coding MGP_C3HHeJ_T0033257.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118418225 118453222 + MGP_C3HHeJ_P0033257 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033258.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118418234 118453220 + MGP_C3HHeJ_P0033258 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033259.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118418234 118439664 + MGP_C3HHeJ_P0033259 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033260.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118426171 118439106 + MGP_C3HHeJ_P0033260 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033261.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118428128 118439611 + MGP_C3HHeJ_P0033261 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033262.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118428517 118439671 + MGP_C3HHeJ_P0033262 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033263.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118428526 118439699 + MGP_C3HHeJ_P0033263 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033264.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118450693 118451761 + Llgl2 protein_coding retained_intron MGP_C3HHeJ_T0033265.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118451177 118452300 + Llgl2 protein_coding processed_transcript MGP_C3HHeJ_T0033266.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118451244 118453222 + MGP_C3HHeJ_P0033266 Llgl2 protein_coding protein_coding MGP_C3HHeJ_T0033267.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118451673 118453026 + Llgl2 protein_coding retained_intron MGP_C3HHeJ_T0033268.1 MGP_C3HHeJ_G0019151.1 mouse_genomes_project 11 118452474 118453222 + Llgl2 protein_coding retained_intron MGP_C3HHeJ_T0032272.1 MGP_C3HHeJ_G0018946.1 mouse_genomes_project 11 103069348 103075225 + MGP_C3HHeJ_P0032272 Aoc2 protein_coding protein_coding MGP_C3HHeJ_T0032273.1 MGP_C3HHeJ_G0018946.1 mouse_genomes_project 11 103069372 103075021 + MGP_C3HHeJ_P0032273 Aoc2 protein_coding protein_coding MGP_C3HHeJ_T0027972.1 MGP_C3HHeJ_G0017835.1 mouse_genomes_project 11 20338994 20368910 - MGP_C3HHeJ_P0027972 B3gnt2 protein_coding protein_coding MGP_C3HHeJ_T0027973.1 MGP_C3HHeJ_G0017835.1 mouse_genomes_project 11 20339112 20369297 - MGP_C3HHeJ_P0027973 B3gnt2 protein_coding protein_coding MGP_C3HHeJ_T0027974.1 MGP_C3HHeJ_G0017835.1 mouse_genomes_project 11 20340830 20369755 - MGP_C3HHeJ_P0027974 B3gnt2 protein_coding protein_coding MGP_C3HHeJ_T0016990.1 MGP_C3HHeJ_G0014944.1 mouse_genomes_project 11 75313127 75318947 + 1700016P03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0003143.1 MGP_C3HHeJ_G0002916.1 mouse_genomes_project 11 66926523 66955776 - Gm12300 antisense antisense MGP_C3HHeJ_T0003144.1 MGP_C3HHeJ_G0002916.1 mouse_genomes_project 11 66941335 66946044 - Gm12300 antisense antisense MGP_C3HHeJ_T0003145.1 MGP_C3HHeJ_G0002916.1 mouse_genomes_project 11 66941652 66955484 - Gm12300 antisense antisense MGP_C3HHeJ_T0016957.1 MGP_C3HHeJ_G0014926.1 mouse_genomes_project 11 39998170 40270768 + processed_transcript processed_transcript MGP_C3HHeJ_T0016958.1 MGP_C3HHeJ_G0014926.1 mouse_genomes_project 11 40185173 40275184 + processed_transcript processed_transcript MGP_C3HHeJ_T0016959.1 MGP_C3HHeJ_G0014926.1 mouse_genomes_project 11 40264939 40273178 + processed_transcript processed_transcript MGP_C3HHeJ_T0031293.1 MGP_C3HHeJ_G0018669.1 mouse_genomes_project 11 88676398 88689296 - MGP_C3HHeJ_P0031293 Epx protein_coding protein_coding MGP_C3HHeJ_T0031294.1 MGP_C3HHeJ_G0018669.1 mouse_genomes_project 11 88683161 88685564 - Epx protein_coding processed_transcript MGP_C3HHeJ_T0033554.1 MGP_C3HHeJ_G0019208.1 mouse_genomes_project 11 120691032 120694140 - MGP_C3HHeJ_P0033554 Socs3 protein_coding protein_coding MGP_C3HHeJ_T0033555.1 MGP_C3HHeJ_G0019208.1 mouse_genomes_project 11 120693828 120695001 - Socs3 protein_coding processed_transcript MGP_C3HHeJ_T0033556.1 MGP_C3HHeJ_G0019208.1 mouse_genomes_project 11 120693887 120694405 - Socs3 protein_coding processed_transcript MGP_C3HHeJ_T0006132.1 MGP_C3HHeJ_G0005113.1 mouse_genomes_project 11 29691616 29727333 - D630024D03Rik lincRNA lincRNA MGP_C3HHeJ_T0006133.1 MGP_C3HHeJ_G0005113.1 mouse_genomes_project 11 29702493 29727384 - D630024D03Rik lincRNA lincRNA MGP_C3HHeJ_T0006134.1 MGP_C3HHeJ_G0005113.1 mouse_genomes_project 11 29720946 29727333 - D630024D03Rik lincRNA lincRNA MGP_C3HHeJ_T0028294.1 MGP_C3HHeJ_G0017910.1 mouse_genomes_project 11 33840890 33864093 + MGP_C3HHeJ_P0028294 Pank3 protein_coding protein_coding MGP_C3HHeJ_T0031026.1 MGP_C3HHeJ_G0018608.1 mouse_genomes_project 11 84193332 84198568 - MGP_C3HHeJ_P0031026 Ccl6 protein_coding protein_coding MGP_C3HHeJ_T0031027.1 MGP_C3HHeJ_G0018608.1 mouse_genomes_project 11 84193845 84195345 - Ccl6 protein_coding retained_intron MGP_C3HHeJ_T0031028.1 MGP_C3HHeJ_G0018608.1 mouse_genomes_project 11 84194922 84198456 - Ccl6 protein_coding retained_intron MGP_C3HHeJ_T0012471.1 MGP_C3HHeJ_G0010575.1 mouse_genomes_project 11 47131292 47131823 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029838.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777129 69781483 - MGP_C3HHeJ_P0029838 2810408A11Rik protein_coding protein_coding MGP_C3HHeJ_T0029839.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777135 69781475 - MGP_C3HHeJ_P0029839 2810408A11Rik protein_coding protein_coding MGP_C3HHeJ_T0029840.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777140 69781527 - MGP_C3HHeJ_P0029840 2810408A11Rik protein_coding protein_coding MGP_C3HHeJ_T0029841.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777140 69781546 - MGP_C3HHeJ_P0029841 2810408A11Rik protein_coding protein_coding MGP_C3HHeJ_T0029842.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777140 69781564 - MGP_C3HHeJ_P0029842 2810408A11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029843.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777243 69781576 - 2810408A11Rik protein_coding retained_intron MGP_C3HHeJ_T0029844.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777243 69781546 - MGP_C3HHeJ_P0029844 2810408A11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029845.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69777982 69779422 - 2810408A11Rik protein_coding retained_intron MGP_C3HHeJ_T0029846.1 MGP_C3HHeJ_G0018319.1 mouse_genomes_project 11 69778985 69781528 - MGP_C3HHeJ_P0029846 2810408A11Rik protein_coding protein_coding MGP_C3HHeJ_T0006190.1 MGP_C3HHeJ_G0005163.1 mouse_genomes_project 11 70686607 70693056 - Gm12320 lincRNA lincRNA MGP_C3HHeJ_T0012585.1 MGP_C3HHeJ_G0010689.1 mouse_genomes_project 11 88249036 88250416 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012495.1 MGP_C3HHeJ_G0010599.1 mouse_genomes_project 11 54706339 54706809 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003046.1 MGP_C3HHeJ_G0002835.1 mouse_genomes_project 11 2471481 2477970 + Gm11963 antisense antisense MGP_C3HHeJ_T0032762.1 MGP_C3HHeJ_G0019048.1 mouse_genomes_project 11 108236952 108260251 - MGP_C3HHeJ_P0032762 Ccdc47 protein_coding protein_coding MGP_C3HHeJ_T0032763.1 MGP_C3HHeJ_G0019048.1 mouse_genomes_project 11 108242967 108246617 - MGP_C3HHeJ_P0032763 Ccdc47 protein_coding protein_coding MGP_C3HHeJ_T0032764.1 MGP_C3HHeJ_G0019048.1 mouse_genomes_project 11 108243806 108249324 - MGP_C3HHeJ_P0032764 Ccdc47 protein_coding protein_coding MGP_C3HHeJ_T0032765.1 MGP_C3HHeJ_G0019048.1 mouse_genomes_project 11 108244193 108245094 - MGP_C3HHeJ_P0032765 Ccdc47 protein_coding protein_coding MGP_C3HHeJ_T0032766.1 MGP_C3HHeJ_G0019048.1 mouse_genomes_project 11 108246481 108249431 - Ccdc47 protein_coding processed_transcript MGP_C3HHeJ_T0006293.1 MGP_C3HHeJ_G0005237.1 mouse_genomes_project 11 119729677 119731843 + Snhg20 lincRNA lincRNA MGP_C3HHeJ_T0006294.1 MGP_C3HHeJ_G0005237.1 mouse_genomes_project 11 119729677 119730345 + Snhg20 lincRNA lincRNA MGP_C3HHeJ_T0006295.1 MGP_C3HHeJ_G0005237.1 mouse_genomes_project 11 119729689 119731842 + Snhg20 lincRNA lincRNA MGP_C3HHeJ_T0030614.1 MGP_C3HHeJ_G0018502.1 mouse_genomes_project 11 77767332 77772608 - MGP_C3HHeJ_P0030614 Trp53i13 protein_coding protein_coding MGP_C3HHeJ_T0030615.1 MGP_C3HHeJ_G0018502.1 mouse_genomes_project 11 77767844 77772001 - Trp53i13 protein_coding processed_transcript MGP_C3HHeJ_T0030616.1 MGP_C3HHeJ_G0018502.1 mouse_genomes_project 11 77768203 77772273 - Trp53i13 protein_coding processed_transcript MGP_C3HHeJ_T0030617.1 MGP_C3HHeJ_G0018502.1 mouse_genomes_project 11 77768334 77774932 - MGP_C3HHeJ_P0030617 Trp53i13 protein_coding protein_coding MGP_C3HHeJ_T0030618.1 MGP_C3HHeJ_G0018502.1 mouse_genomes_project 11 77771981 77775181 - Trp53i13 protein_coding processed_transcript MGP_C3HHeJ_T0011701.1 MGP_C3HHeJ_G0009831.1 mouse_genomes_project 11 73478660 73479594 - MGP_C3HHeJ_P0011701 Olfr379-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0029040.1 MGP_C3HHeJ_G0018129.1 mouse_genomes_project 11 58124831 58131616 + MGP_C3HHeJ_P0029040 protein_coding protein_coding MGP_C3HHeJ_T0033653.1 MGP_C3HHeJ_G0019229.1 mouse_genomes_project 11 122117206 122134870 - MGP_C3HHeJ_P0033653 Sgsh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033654.1 MGP_C3HHeJ_G0019229.1 mouse_genomes_project 11 122120029 122134898 - Sgsh protein_coding processed_transcript MGP_C3HHeJ_T0033655.1 MGP_C3HHeJ_G0019229.1 mouse_genomes_project 11 122120065 122134877 - MGP_C3HHeJ_P0033655 Sgsh protein_coding protein_coding MGP_C3HHeJ_T0033656.1 MGP_C3HHeJ_G0019229.1 mouse_genomes_project 11 122120205 122121649 - Sgsh protein_coding processed_transcript MGP_C3HHeJ_T0033657.1 MGP_C3HHeJ_G0019229.1 mouse_genomes_project 11 122120586 122132174 - Sgsh protein_coding processed_transcript MGP_C3HHeJ_T0003146.1 MGP_C3HHeJ_G0002917.1 mouse_genomes_project 11 67302635 67308477 - Gm12301 antisense antisense MGP_C3HHeJ_T0003227.1 MGP_C3HHeJ_G0002979.1 mouse_genomes_project 11 101949481 101962048 - Gm14206 antisense antisense MGP_C3HHeJ_T0016954.1 MGP_C3HHeJ_G0014923.1 mouse_genomes_project 11 28060798 28074384 + Gm8098 processed_transcript processed_transcript MGP_C3HHeJ_T0011214.1 MGP_C3HHeJ_G0009347.1 mouse_genomes_project 11 87061562 87061665 + Gm25427 misc_RNA misc_RNA MGP_C3HHeJ_T0011219.1 MGP_C3HHeJ_G0009352.1 mouse_genomes_project 11 102471723 102472011 - Gm24358 misc_RNA misc_RNA MGP_C3HHeJ_T0028372.1 MGP_C3HHeJ_G0017928.1 mouse_genomes_project 11 41908673 41971083 + MGP_C3HHeJ_P0028372 Ccnjl protein_coding protein_coding MGP_C3HHeJ_T0028373.1 MGP_C3HHeJ_G0017928.1 mouse_genomes_project 11 41909135 41939533 + Ccnjl protein_coding processed_transcript MGP_C3HHeJ_T0030267.1 MGP_C3HHeJ_G0018404.1 mouse_genomes_project 11 73115704 73160640 + MGP_C3HHeJ_P0030267 Itgae protein_coding protein_coding MGP_C3HHeJ_T0030268.1 MGP_C3HHeJ_G0018404.1 mouse_genomes_project 11 73115704 73177203 + MGP_C3HHeJ_P0030268 Itgae protein_coding protein_coding MGP_C3HHeJ_T0029008.1 MGP_C3HHeJ_G0018106.1 mouse_genomes_project 11 57721943 57728692 - MGP_C3HHeJ_P0029008 4930504O13Rik protein_coding protein_coding MGP_C3HHeJ_T0006302.1 MGP_C3HHeJ_G0005244.1 mouse_genomes_project 11 121921319 121926661 + Gm26888 lincRNA lincRNA MGP_C3HHeJ_T0003273.1 MGP_C3HHeJ_G0003019.1 mouse_genomes_project 11 117971309 117973038 - Ict1os antisense antisense MGP_C3HHeJ_T0033851.1 MGP_C3HHeJ_G0019267.1 mouse_genomes_project 11 123477729 123485534 - MGP_C3HHeJ_P0033851 Pycr1 protein_coding protein_coding MGP_C3HHeJ_T0033852.1 MGP_C3HHeJ_G0019267.1 mouse_genomes_project 11 123481279 123485612 - MGP_C3HHeJ_P0033852 Pycr1 protein_coding protein_coding MGP_C3HHeJ_T0033853.1 MGP_C3HHeJ_G0019267.1 mouse_genomes_project 11 123483087 123485507 - MGP_C3HHeJ_P0033853 Pycr1 protein_coding protein_coding MGP_C3HHeJ_T0033854.1 MGP_C3HHeJ_G0019267.1 mouse_genomes_project 11 123483341 123485568 - MGP_C3HHeJ_P0033854 Pycr1 protein_coding protein_coding MGP_C3HHeJ_T0033855.1 MGP_C3HHeJ_G0019267.1 mouse_genomes_project 11 123483577 123485633 - MGP_C3HHeJ_P0033855 Pycr1 protein_coding protein_coding MGP_C3HHeJ_T0033856.1 MGP_C3HHeJ_G0019267.1 mouse_genomes_project 11 123484608 123485568 - Pycr1 protein_coding retained_intron MGP_C3HHeJ_T0009684.1 MGP_C3HHeJ_G0007817.1 mouse_genomes_project 11 121923741 121923803 - Mir6934 miRNA miRNA MGP_C3HHeJ_T0009582.1 MGP_C3HHeJ_G0007715.1 mouse_genomes_project 11 36217970 36218047 - Gm25693 miRNA miRNA MGP_C3HHeJ_T0012579.1 MGP_C3HHeJ_G0010683.1 mouse_genomes_project 11 85905147 85905605 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030827.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79714284 79719778 + Nf1 protein_coding processed_transcript MGP_C3HHeJ_T0030828.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79714383 79971830 + MGP_C3HHeJ_P0030828 Nf1 protein_coding protein_coding MGP_C3HHeJ_T0030829.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79714416 79975287 + MGP_C3HHeJ_P0030829 Nf1 protein_coding protein_coding MGP_C3HHeJ_T0030830.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79714478 79811882 + Nf1 protein_coding retained_intron MGP_C3HHeJ_T0030831.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79714591 79862239 + MGP_C3HHeJ_P0030831 Nf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030832.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79714591 79861394 + MGP_C3HHeJ_P0030832 Nf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030833.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79829156 79858796 + Nf1 protein_coding processed_transcript MGP_C3HHeJ_T0030834.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79829156 79858796 + Nf1 protein_coding processed_transcript MGP_C3HHeJ_T0030844.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79928016 79963004 + Nf1 protein_coding retained_intron MGP_C3HHeJ_T0030845.1 MGP_C3HHeJ_G0018550.1 mouse_genomes_project 11 79937410 79972936 + MGP_C3HHeJ_P0030845 Nf1 protein_coding protein_coding MGP_C3HHeJ_T0009635.1 MGP_C3HHeJ_G0007768.1 mouse_genomes_project 11 78483809 78483870 + Mir7653 miRNA miRNA MGP_C3HHeJ_T0009636.1 MGP_C3HHeJ_G0007769.1 mouse_genomes_project 11 80111807 80111873 + Mir193a miRNA miRNA MGP_C3HHeJ_T0029787.1 MGP_C3HHeJ_G0018302.1 mouse_genomes_project 11 69541323 69544032 - MGP_C3HHeJ_P0029787 Tnfsf13 protein_coding protein_coding MGP_C3HHeJ_T0029788.1 MGP_C3HHeJ_G0018302.1 mouse_genomes_project 11 69541409 69544262 - MGP_C3HHeJ_P0029788 Tnfsf13 protein_coding protein_coding MGP_C3HHeJ_T0028230.1 MGP_C3HHeJ_G0017887.1 mouse_genomes_project 11 30215485 30227027 + MGP_C3HHeJ_P0028230 protein_coding protein_coding MGP_C3HHeJ_T0029091.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58748442 58790733 - MGP_C3HHeJ_P0029091 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029092.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58748452 58790741 - MGP_C3HHeJ_P0029092 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029093.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58769988 58790733 - MGP_C3HHeJ_P0029093 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029094.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58769994 58790647 - MGP_C3HHeJ_P0029094 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029095.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58779047 58790733 - MGP_C3HHeJ_P0029095 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029096.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58779269 58788219 - MGP_C3HHeJ_P0029096 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029097.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58779301 58790650 - MGP_C3HHeJ_P0029097 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0029098.1 MGP_C3HHeJ_G0018150.1 mouse_genomes_project 11 58779462 58791920 - MGP_C3HHeJ_P0029098 Snap47 protein_coding protein_coding MGP_C3HHeJ_T0031103.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85558904 85589936 + MGP_C3HHeJ_P0031103 Myo19 protein_coding protein_coding MGP_C3HHeJ_T0031104.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85558926 85561748 + Myo19 protein_coding processed_transcript MGP_C3HHeJ_T0031105.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85558976 85589832 + Myo19 protein_coding processed_transcript MGP_C3HHeJ_T0031106.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85559066 85559760 + Myo19 protein_coding processed_transcript MGP_C3HHeJ_T0031107.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85559109 85589841 + Myo19 protein_coding processed_transcript MGP_C3HHeJ_T0031108.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85559123 85572276 + MGP_C3HHeJ_P0031108 Myo19 protein_coding protein_coding MGP_C3HHeJ_T0031109.1 MGP_C3HHeJ_G0018629.1 mouse_genomes_project 11 85561342 85589832 + Myo19 protein_coding processed_transcript MGP_C3HHeJ_T0098787.1 MGP_C3HHeJ_G0036981.1 mouse_genomes_project 11 72902612 72902774 + Gm26121 snRNA snRNA MGP_C3HHeJ_T0027661.1 MGP_C3HHeJ_G0017758.1 mouse_genomes_project 11 2685075 2688780 - MGP_C3HHeJ_P0027661 Mrps24 protein_coding protein_coding MGP_C3HHeJ_T0027662.1 MGP_C3HHeJ_G0017758.1 mouse_genomes_project 11 2685418 2688760 - Mrps24 protein_coding retained_intron MGP_C3HHeJ_T0027663.1 MGP_C3HHeJ_G0017758.1 mouse_genomes_project 11 2685615 2697033 - Mrps24 protein_coding processed_transcript MGP_C3HHeJ_T0027664.1 MGP_C3HHeJ_G0017758.1 mouse_genomes_project 11 2685647 2688783 - Mrps24 protein_coding retained_intron MGP_C3HHeJ_T0027665.1 MGP_C3HHeJ_G0017758.1 mouse_genomes_project 11 2685752 2688735 - Mrps24 protein_coding retained_intron MGP_C3HHeJ_T0003051.1 MGP_C3HHeJ_G0002838.1 mouse_genomes_project 11 4262612 4265751 - antisense antisense MGP_C3HHeJ_T0003124.1 MGP_C3HHeJ_G0002900.1 mouse_genomes_project 11 62051210 62071124 + Gm12278 antisense antisense MGP_C3HHeJ_T0016944.1 MGP_C3HHeJ_G0014916.1 mouse_genomes_project 11 18831180 18835612 + Gm12043 processed_transcript processed_transcript MGP_C3HHeJ_T0009677.1 MGP_C3HHeJ_G0007810.1 mouse_genomes_project 11 117809191 117809299 + Gm25837 miRNA miRNA MGP_C3HHeJ_T0006217.1 MGP_C3HHeJ_G0005183.1 mouse_genomes_project 11 83794232 83802378 + lincRNA lincRNA MGP_C3HHeJ_T0006218.1 MGP_C3HHeJ_G0005183.1 mouse_genomes_project 11 83794232 83797235 + lincRNA lincRNA MGP_C3HHeJ_T0006219.1 MGP_C3HHeJ_G0005183.1 mouse_genomes_project 11 83795514 83795959 + lincRNA lincRNA MGP_C3HHeJ_T0030922.1 MGP_C3HHeJ_G0018573.1 mouse_genomes_project 11 82345272 82351766 + 5530401A14Rik protein_coding processed_transcript MGP_C3HHeJ_T0030923.1 MGP_C3HHeJ_G0018573.1 mouse_genomes_project 11 82345278 82382150 + MGP_C3HHeJ_P0030923 5530401A14Rik protein_coding protein_coding MGP_C3HHeJ_T0030308.1 MGP_C3HHeJ_G0018418.1 mouse_genomes_project 11 73465606 73469047 - MGP_C3HHeJ_P0030308 Olfr378 protein_coding protein_coding MGP_C3HHeJ_T0012376.1 MGP_C3HHeJ_G0010480.1 mouse_genomes_project 11 11905839 11906388 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029433.1 MGP_C3HHeJ_G0018216.1 mouse_genomes_project 11 62407268 62431433 + MGP_C3HHeJ_P0029433 Trim16 protein_coding protein_coding MGP_C3HHeJ_T0029434.1 MGP_C3HHeJ_G0018216.1 mouse_genomes_project 11 62407290 62439772 + MGP_C3HHeJ_P0029434 Trim16 protein_coding protein_coding MGP_C3HHeJ_T0029435.1 MGP_C3HHeJ_G0018216.1 mouse_genomes_project 11 62407477 62408286 + Trim16 protein_coding processed_transcript MGP_C3HHeJ_T0029436.1 MGP_C3HHeJ_G0018216.1 mouse_genomes_project 11 62407506 62431433 + MGP_C3HHeJ_P0029436 Trim16 protein_coding protein_coding MGP_C3HHeJ_T0029437.1 MGP_C3HHeJ_G0018216.1 mouse_genomes_project 11 62422168 62429915 + Trim16 protein_coding processed_transcript MGP_C3HHeJ_T0029055.1 MGP_C3HHeJ_G0018139.1 mouse_genomes_project 11 58315247 58328548 + MGP_C3HHeJ_P0029055 Trim11 protein_coding protein_coding MGP_C3HHeJ_T0029056.1 MGP_C3HHeJ_G0018139.1 mouse_genomes_project 11 58315269 58328551 + MGP_C3HHeJ_P0029056 Trim11 protein_coding protein_coding MGP_C3HHeJ_T0029057.1 MGP_C3HHeJ_G0018139.1 mouse_genomes_project 11 58315270 58328550 + MGP_C3HHeJ_P0029057 Trim11 protein_coding protein_coding MGP_C3HHeJ_T0003071.1 MGP_C3HHeJ_G0002853.1 mouse_genomes_project 11 31695424 31697439 + Gm12119 antisense antisense MGP_C3HHeJ_T0012439.1 MGP_C3HHeJ_G0010543.1 mouse_genomes_project 11 28761811 28762790 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009656.1 MGP_C3HHeJ_G0007789.1 mouse_genomes_project 11 99386820 99386890 - Gm22461 miRNA miRNA MGP_C3HHeJ_T0101641.1 MGP_C3HHeJ_G0039607.1 mouse_genomes_project 11 73722134 73725424 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029006.1 MGP_C3HHeJ_G0018104.1 mouse_genomes_project 11 57697136 57702049 + MGP_C3HHeJ_P0029006 1810065E05Rik protein_coding protein_coding MGP_C3HHeJ_T0031912.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100248745 100261510 + Thra protein_coding processed_transcript MGP_C3HHeJ_T0031913.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100248908 100261770 + Thra protein_coding processed_transcript MGP_C3HHeJ_T0031914.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100249031 100261573 + Thra protein_coding processed_transcript MGP_C3HHeJ_T0031915.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100249053 100273004 + MGP_C3HHeJ_P0031915 Thra protein_coding unknown_likely_coding MGP_C3HHeJ_T0031916.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100249938 100266360 + Thra protein_coding processed_transcript MGP_C3HHeJ_T0031917.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100249938 100277463 + MGP_C3HHeJ_P0031917 Thra protein_coding protein_coding MGP_C3HHeJ_T0031918.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100250285 100265660 + MGP_C3HHeJ_P0031918 Thra protein_coding protein_coding MGP_C3HHeJ_T0031919.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100252342 100261909 + Thra protein_coding processed_transcript MGP_C3HHeJ_T0031920.1 MGP_C3HHeJ_G0018826.1 mouse_genomes_project 11 100261717 100276850 + MGP_C3HHeJ_P0031920 Thra protein_coding protein_coding MGP_C3HHeJ_T0032879.1 MGP_C3HHeJ_G0019071.1 mouse_genomes_project 11 109607505 109626061 + MGP_C3HHeJ_P0032879 Psmd12 protein_coding protein_coding MGP_C3HHeJ_T0032880.1 MGP_C3HHeJ_G0019071.1 mouse_genomes_project 11 109607549 109632241 + MGP_C3HHeJ_P0032880 Psmd12 protein_coding protein_coding MGP_C3HHeJ_T0032881.1 MGP_C3HHeJ_G0019071.1 mouse_genomes_project 11 109607598 109625627 + MGP_C3HHeJ_P0032881 Psmd12 protein_coding protein_coding MGP_C3HHeJ_T0100013.1 MGP_C3HHeJ_G0038207.1 mouse_genomes_project 11 55453210 55453276 - Gm24253 snoRNA snoRNA MGP_C3HHeJ_T0006271.1 MGP_C3HHeJ_G0005221.1 mouse_genomes_project 11 112826990 112828883 + Gm11682 lincRNA lincRNA MGP_C3HHeJ_T0028666.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50152989 50164886 + MGP_C3HHeJ_P0028666 Clk4 protein_coding protein_coding MGP_C3HHeJ_T0028667.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50152989 50163279 + MGP_C3HHeJ_P0028667 Clk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028668.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154373 50177006 + MGP_C3HHeJ_P0028668 Clk4 protein_coding protein_coding MGP_C3HHeJ_T0028669.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154409 50166519 + MGP_C3HHeJ_P0028669 Clk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028670.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154421 50158764 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0028671.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154423 50163624 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0028672.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154428 50164882 + MGP_C3HHeJ_P0028672 Clk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028673.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154433 50163320 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0028674.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50154445 50177008 + MGP_C3HHeJ_P0028674 Clk4 protein_coding protein_coding MGP_C3HHeJ_T0028675.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50163258 50168469 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0028676.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50164710 50177006 + MGP_C3HHeJ_P0028676 Clk4 protein_coding protein_coding MGP_C3HHeJ_T0028677.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50164871 50167497 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0028678.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50166167 50166772 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0028679.1 MGP_C3HHeJ_G0018017.1 mouse_genomes_project 11 50175350 50176442 + Clk4 protein_coding retained_intron MGP_C3HHeJ_T0003216.1 MGP_C3HHeJ_G0002973.1 mouse_genomes_project 11 99916762 99917772 + Gm12352 antisense antisense MGP_C3HHeJ_T0006254.1 MGP_C3HHeJ_G0005207.1 mouse_genomes_project 11 98065917 98107632 - 2010300F17Rik lincRNA lincRNA MGP_C3HHeJ_T0006255.1 MGP_C3HHeJ_G0005207.1 mouse_genomes_project 11 98106227 98107606 - 2010300F17Rik lincRNA lincRNA MGP_C3HHeJ_T0003112.1 MGP_C3HHeJ_G0002891.1 mouse_genomes_project 11 58340024 58343774 + Gm10435 antisense antisense MGP_C3HHeJ_T0003113.1 MGP_C3HHeJ_G0002891.1 mouse_genomes_project 11 58340024 58343774 + Gm10435 antisense antisense MGP_C3HHeJ_T0003236.1 MGP_C3HHeJ_G0002988.1 mouse_genomes_project 11 103859313 103864658 - E130111B04Rik antisense antisense MGP_C3HHeJ_T0032670.1 MGP_C3HHeJ_G0019026.1 mouse_genomes_project 11 106290423 106406001 - MGP_C3HHeJ_P0032670 Kansl1 protein_coding protein_coding MGP_C3HHeJ_T0032671.1 MGP_C3HHeJ_G0019026.1 mouse_genomes_project 11 106290695 106406001 - MGP_C3HHeJ_P0032671 Kansl1 protein_coding protein_coding MGP_C3HHeJ_T0032672.1 MGP_C3HHeJ_G0019026.1 mouse_genomes_project 11 106290695 106433602 - MGP_C3HHeJ_P0032672 Kansl1 protein_coding protein_coding MGP_C3HHeJ_T0032673.1 MGP_C3HHeJ_G0019026.1 mouse_genomes_project 11 106290739 106405408 - MGP_C3HHeJ_P0032673 Kansl1 protein_coding protein_coding MGP_C3HHeJ_T0032674.1 MGP_C3HHeJ_G0019026.1 mouse_genomes_project 11 106292115 106300303 - Kansl1 protein_coding processed_transcript MGP_C3HHeJ_T0032675.1 MGP_C3HHeJ_G0019026.1 mouse_genomes_project 11 106389056 106432732 - MGP_C3HHeJ_P0032675 Kansl1 protein_coding protein_coding MGP_C3HHeJ_T0003242.1 MGP_C3HHeJ_G0002994.1 mouse_genomes_project 11 105280176 105281615 + Arhgap27os1 antisense antisense MGP_C3HHeJ_T0029159.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59588434 59599557 - MGP_C3HHeJ_P0029159 Srebf1 protein_coding protein_coding MGP_C3HHeJ_T0029160.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59588434 59611326 - MGP_C3HHeJ_P0029160 Srebf1 protein_coding protein_coding MGP_C3HHeJ_T0029161.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59589474 59590388 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029162.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59589807 59599644 - MGP_C3HHeJ_P0029162 Srebf1 protein_coding protein_coding MGP_C3HHeJ_T0029163.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59590710 59591562 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029164.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59590712 59591844 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029165.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59591147 59593065 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029166.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59591878 59592708 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029167.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59592320 59593498 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029168.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59593396 59595310 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029169.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59595156 59599571 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0029170.1 MGP_C3HHeJ_G0018166.1 mouse_genomes_project 11 59596129 59613330 - Srebf1 protein_coding processed_transcript MGP_C3HHeJ_T0027682.1 MGP_C3HHeJ_G0017764.1 mouse_genomes_project 11 2865168 2871273 - MGP_C3HHeJ_P0027682 Pold2 protein_coding protein_coding MGP_C3HHeJ_T0027683.1 MGP_C3HHeJ_G0017764.1 mouse_genomes_project 11 2865176 2866180 - Pold2 protein_coding retained_intron MGP_C3HHeJ_T0027684.1 MGP_C3HHeJ_G0017764.1 mouse_genomes_project 11 2867066 2870649 - MGP_C3HHeJ_P0027684 Pold2 protein_coding protein_coding MGP_C3HHeJ_T0027685.1 MGP_C3HHeJ_G0017764.1 mouse_genomes_project 11 2867103 2869751 - Pold2 protein_coding retained_intron MGP_C3HHeJ_T0027686.1 MGP_C3HHeJ_G0017764.1 mouse_genomes_project 11 2868156 2871193 - Pold2 protein_coding processed_transcript MGP_C3HHeJ_T0009642.1 MGP_C3HHeJ_G0007775.1 mouse_genomes_project 11 87853194 87853280 + Mir301 miRNA miRNA MGP_C3HHeJ_T0028401.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43058307 43459210 + MGP_C3HHeJ_P0028401 Ebf1 protein_coding protein_coding MGP_C3HHeJ_T0028402.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43058307 43459744 + MGP_C3HHeJ_P0028402 Ebf1 protein_coding protein_coding MGP_C3HHeJ_T0028403.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43058307 43462337 + MGP_C3HHeJ_P0028403 Ebf1 protein_coding protein_coding MGP_C3HHeJ_T0028404.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43059073 43087837 + Ebf1 protein_coding processed_transcript MGP_C3HHeJ_T0028405.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43059136 43084464 + Ebf1 protein_coding processed_transcript MGP_C3HHeJ_T0028406.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43059178 43458963 + MGP_C3HHeJ_P0028406 Ebf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028407.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43062732 43084454 + Ebf1 protein_coding processed_transcript MGP_C3HHeJ_T0028408.1 MGP_C3HHeJ_G0017937.1 mouse_genomes_project 11 43365339 43427129 + Ebf1 protein_coding processed_transcript MGP_C3HHeJ_T0027896.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16239214 16382716 - MGP_C3HHeJ_P0027896 Meis1 protein_coding protein_coding MGP_C3HHeJ_T0027897.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16239826 16382700 - MGP_C3HHeJ_P0027897 Meis1 protein_coding protein_coding MGP_C3HHeJ_T0027898.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16239826 16382445 - MGP_C3HHeJ_P0027898 Meis1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027899.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16240059 16382689 - MGP_C3HHeJ_P0027899 Meis1 protein_coding protein_coding MGP_C3HHeJ_T0027900.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16240065 16375731 - Meis1 protein_coding processed_transcript MGP_C3HHeJ_T0027901.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16240072 16382445 - MGP_C3HHeJ_P0027901 Meis1 protein_coding protein_coding MGP_C3HHeJ_T0027902.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16240737 16380020 - MGP_C3HHeJ_P0027902 Meis1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027903.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16350482 16382653 - Meis1 protein_coding retained_intron MGP_C3HHeJ_T0027904.1 MGP_C3HHeJ_G0017816.1 mouse_genomes_project 11 16373479 16382653 - Meis1 protein_coding retained_intron MGP_C3HHeJ_T0006179.1 MGP_C3HHeJ_G0005155.1 mouse_genomes_project 11 63028322 63033043 + B130011K05Rik lincRNA lincRNA MGP_C3HHeJ_T0033366.1 MGP_C3HHeJ_G0019170.1 mouse_genomes_project 11 118867863 118896899 - Srp68 protein_coding processed_transcript MGP_C3HHeJ_T0033367.1 MGP_C3HHeJ_G0019170.1 mouse_genomes_project 11 118867863 118896899 - MGP_C3HHeJ_P0033367 Srp68 protein_coding protein_coding MGP_C3HHeJ_T0033368.1 MGP_C3HHeJ_G0019170.1 mouse_genomes_project 11 118867863 118896817 - MGP_C3HHeJ_P0033368 Srp68 protein_coding protein_coding MGP_C3HHeJ_T0033369.1 MGP_C3HHeJ_G0019170.1 mouse_genomes_project 11 118871484 118884032 - Srp68 protein_coding processed_transcript MGP_C3HHeJ_T0028282.1 MGP_C3HHeJ_G0017907.1 mouse_genomes_project 11 32338509 32452714 + MGP_C3HHeJ_P0028282 Fam196b protein_coding protein_coding MGP_C3HHeJ_T0028283.1 MGP_C3HHeJ_G0017907.1 mouse_genomes_project 11 32338509 32452713 + MGP_C3HHeJ_P0028283 Fam196b protein_coding protein_coding MGP_C3HHeJ_T0003282.1 MGP_C3HHeJ_G0003027.1 mouse_genomes_project 11 120481805 120483535 - Gm11723 antisense antisense MGP_C3HHeJ_T0031266.1 MGP_C3HHeJ_G0018664.1 mouse_genomes_project 11 88533962 88542231 + MGP_C3HHeJ_P0031266 Supt4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031267.1 MGP_C3HHeJ_G0018664.1 mouse_genomes_project 11 88533963 88542231 + MGP_C3HHeJ_P0031267 Supt4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031268.1 MGP_C3HHeJ_G0018664.1 mouse_genomes_project 11 88534010 88542242 + MGP_C3HHeJ_P0031268 Supt4a protein_coding protein_coding MGP_C3HHeJ_T0009685.1 MGP_C3HHeJ_G0007818.1 mouse_genomes_project 11 122171652 122171742 + Mir1932 miRNA miRNA MGP_C3HHeJ_T0030322.1 MGP_C3HHeJ_G0018427.1 mouse_genomes_project 11 73881759 73887127 - MGP_C3HHeJ_P0030322 Olfr391-ps protein_coding protein_coding MGP_C3HHeJ_T0031715.1 MGP_C3HHeJ_G0018781.1 mouse_genomes_project 11 98544630 98574653 - MGP_C3HHeJ_P0031715 Kpnb1 protein_coding protein_coding MGP_C3HHeJ_T0031716.1 MGP_C3HHeJ_G0018781.1 mouse_genomes_project 11 98547971 98550336 - Kpnb1 protein_coding retained_intron MGP_C3HHeJ_T0031717.1 MGP_C3HHeJ_G0018781.1 mouse_genomes_project 11 98550334 98551514 - Kpnb1 protein_coding retained_intron MGP_C3HHeJ_T0027607.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 1995869 2008281 - Gas2l1 protein_coding processed_transcript MGP_C3HHeJ_T0027608.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 1997480 2008287 - MGP_C3HHeJ_P0027608 Gas2l1 protein_coding protein_coding MGP_C3HHeJ_T0027611.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 2003358 2008314 - MGP_C3HHeJ_P0027611 Gas2l1 protein_coding protein_coding MGP_C3HHeJ_T0027612.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 2003367 2008264 - MGP_C3HHeJ_P0027612 Gas2l1 protein_coding protein_coding MGP_C3HHeJ_T0027613.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 2003456 2007838 - Gas2l1 protein_coding processed_transcript MGP_C3HHeJ_T0027614.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 2006859 2008265 - MGP_C3HHeJ_P0027614 Gas2l1 protein_coding protein_coding MGP_C3HHeJ_T0027615.1 MGP_C3HHeJ_G0017748.1 mouse_genomes_project 11 2007403 2008281 - Gas2l1 protein_coding processed_transcript MGP_C3HHeJ_T0003303.1 MGP_C3HHeJ_G0003044.1 mouse_genomes_project 11 124732516 124733174 - Gm15643 antisense antisense MGP_C3HHeJ_T0030076.1 MGP_C3HHeJ_G0018364.1 mouse_genomes_project 11 70594211 70599856 - MGP_C3HHeJ_P0030076 Spag7 protein_coding protein_coding MGP_C3HHeJ_T0030077.1 MGP_C3HHeJ_G0018364.1 mouse_genomes_project 11 70594443 70599658 - Spag7 protein_coding retained_intron MGP_C3HHeJ_T0030078.1 MGP_C3HHeJ_G0018364.1 mouse_genomes_project 11 70594780 70599719 - Spag7 protein_coding retained_intron MGP_C3HHeJ_T0030079.1 MGP_C3HHeJ_G0018364.1 mouse_genomes_project 11 70594839 70599730 - MGP_C3HHeJ_P0030079 Spag7 protein_coding protein_coding MGP_C3HHeJ_T0012659.1 MGP_C3HHeJ_G0010763.1 mouse_genomes_project 11 120942655 120943123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012577.1 MGP_C3HHeJ_G0010681.1 mouse_genomes_project 11 85778298 85778707 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006178.1 MGP_C3HHeJ_G0005154.1 mouse_genomes_project 11 62779661 62794166 + B430319H21Rik lincRNA lincRNA MGP_C3HHeJ_T0017029.1 MGP_C3HHeJ_G0014965.1 mouse_genomes_project 11 99542087 99543055 - Gm11632 processed_transcript processed_transcript MGP_C3HHeJ_T0012399.1 MGP_C3HHeJ_G0010503.1 mouse_genomes_project 11 18009896 18010519 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033354.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118789673 118799715 - Acox1 protein_coding processed_transcript MGP_C3HHeJ_T0033355.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118789673 118816860 - MGP_C3HHeJ_P0033355 Acox1 protein_coding protein_coding MGP_C3HHeJ_T0033356.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118789673 118817104 - MGP_C3HHeJ_P0033356 Acox1 protein_coding protein_coding MGP_C3HHeJ_T0033357.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118789673 118807026 - MGP_C3HHeJ_P0033357 Acox1 protein_coding protein_coding MGP_C3HHeJ_T0033358.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118793132 118798915 - Acox1 protein_coding processed_transcript MGP_C3HHeJ_T0033359.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118797420 118799865 - Acox1 protein_coding processed_transcript MGP_C3HHeJ_T0033360.1 MGP_C3HHeJ_G0019167.1 mouse_genomes_project 11 118806479 118816788 - Acox1 protein_coding processed_transcript MGP_C3HHeJ_T0100012.1 MGP_C3HHeJ_G0038206.1 mouse_genomes_project 11 54629511 54629651 + Gm22884 snoRNA snoRNA MGP_C3HHeJ_T0029240.1 MGP_C3HHeJ_G0018182.1 mouse_genomes_project 11 60389050 60400460 - MGP_C3HHeJ_P0029240 Natd1 protein_coding protein_coding MGP_C3HHeJ_T0029241.1 MGP_C3HHeJ_G0018182.1 mouse_genomes_project 11 60392762 60401400 - Natd1 protein_coding processed_transcript MGP_C3HHeJ_T0098811.1 MGP_C3HHeJ_G0037005.1 mouse_genomes_project 11 97230440 97230565 + Gm24725 snRNA snRNA MGP_C3HHeJ_T0029979.1 MGP_C3HHeJ_G0018344.1 mouse_genomes_project 11 70218661 70225688 - MGP_C3HHeJ_P0029979 Alox12e protein_coding protein_coding MGP_C3HHeJ_T0029980.1 MGP_C3HHeJ_G0018344.1 mouse_genomes_project 11 70223030 70224637 - Alox12e protein_coding retained_intron MGP_C3HHeJ_T0029981.1 MGP_C3HHeJ_G0018344.1 mouse_genomes_project 11 70224053 70224914 - Alox12e protein_coding retained_intron MGP_C3HHeJ_T0029982.1 MGP_C3HHeJ_G0018344.1 mouse_genomes_project 11 70224114 70225508 - Alox12e protein_coding retained_intron MGP_C3HHeJ_T0012545.1 MGP_C3HHeJ_G0010649.1 mouse_genomes_project 11 73429665 73430052 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031807.1 MGP_C3HHeJ_G0018800.1 mouse_genomes_project 11 99367354 99432950 - MGP_C3HHeJ_P0031807 Plxdc1 protein_coding protein_coding MGP_C3HHeJ_T0031808.1 MGP_C3HHeJ_G0018800.1 mouse_genomes_project 11 99367772 99432905 - MGP_C3HHeJ_P0031808 Plxdc1 protein_coding protein_coding MGP_C3HHeJ_T0031809.1 MGP_C3HHeJ_G0018800.1 mouse_genomes_project 11 99381992 99432939 - Plxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0031810.1 MGP_C3HHeJ_G0018800.1 mouse_genomes_project 11 99425055 99432936 - MGP_C3HHeJ_P0031810 Plxdc1 protein_coding protein_coding MGP_C3HHeJ_T0003250.1 MGP_C3HHeJ_G0003001.1 mouse_genomes_project 11 108164082 108165026 - Gm11672 antisense antisense MGP_C3HHeJ_T0009663.1 MGP_C3HHeJ_G0007796.1 mouse_genomes_project 11 103099613 103099692 - Gm25593 miRNA miRNA MGP_C3HHeJ_T0030292.1 MGP_C3HHeJ_G0018412.1 mouse_genomes_project 11 73302026 73337608 + MGP_C3HHeJ_P0030292 Trpv3 protein_coding protein_coding MGP_C3HHeJ_T0029448.1 MGP_C3HHeJ_G0018219.1 mouse_genomes_project 11 62546044 62582146 + MGP_C3HHeJ_P0029448 Cdrt4 protein_coding protein_coding MGP_C3HHeJ_T0032737.1 MGP_C3HHeJ_G0019039.1 mouse_genomes_project 11 108005981 108028584 + MGP_C3HHeJ_P0032737 Ace protein_coding protein_coding MGP_C3HHeJ_T0032738.1 MGP_C3HHeJ_G0019039.1 mouse_genomes_project 11 108009361 108027880 + MGP_C3HHeJ_P0032738 Ace protein_coding protein_coding MGP_C3HHeJ_T0032739.1 MGP_C3HHeJ_G0019039.1 mouse_genomes_project 11 108013245 108027873 + MGP_C3HHeJ_P0032739 Ace protein_coding protein_coding MGP_C3HHeJ_T0032740.1 MGP_C3HHeJ_G0019039.1 mouse_genomes_project 11 108014640 108023726 + Ace protein_coding processed_transcript MGP_C3HHeJ_T0028979.1 MGP_C3HHeJ_G0018096.1 mouse_genomes_project 11 57416532 57424443 + MGP_C3HHeJ_P0028979 Mrpl22 protein_coding protein_coding MGP_C3HHeJ_T0028980.1 MGP_C3HHeJ_G0018096.1 mouse_genomes_project 11 57416573 57421092 + Mrpl22 protein_coding processed_transcript MGP_C3HHeJ_T0028981.1 MGP_C3HHeJ_G0018096.1 mouse_genomes_project 11 57416586 57422170 + Mrpl22 protein_coding processed_transcript MGP_C3HHeJ_T0031213.1 MGP_C3HHeJ_G0018654.1 mouse_genomes_project 11 87849424 87865795 + MGP_C3HHeJ_P0031213 Ska2 protein_coding protein_coding MGP_C3HHeJ_T0031214.1 MGP_C3HHeJ_G0018654.1 mouse_genomes_project 11 87849441 87865794 + Ska2 protein_coding processed_transcript MGP_C3HHeJ_T0031215.1 MGP_C3HHeJ_G0018654.1 mouse_genomes_project 11 87856059 87863267 + Ska2 protein_coding processed_transcript MGP_C3HHeJ_T0028301.1 MGP_C3HHeJ_G0017913.1 mouse_genomes_project 11 33917454 34067212 - MGP_C3HHeJ_P0028301 Wwc1 protein_coding protein_coding MGP_C3HHeJ_T0028302.1 MGP_C3HHeJ_G0017913.1 mouse_genomes_project 11 33933570 33934934 - Wwc1 protein_coding processed_transcript MGP_C3HHeJ_T0028303.1 MGP_C3HHeJ_G0017913.1 mouse_genomes_project 11 33951438 33958264 - Wwc1 protein_coding processed_transcript MGP_C3HHeJ_T0009628.1 MGP_C3HHeJ_G0007761.1 mouse_genomes_project 11 75463169 75463284 - miRNA miRNA MGP_C3HHeJ_T0029031.1 MGP_C3HHeJ_G0018123.1 mouse_genomes_project 11 58053200 58054212 + MGP_C3HHeJ_P0029031 protein_coding protein_coding MGP_C3HHeJ_T0009612.1 MGP_C3HHeJ_G0007745.1 mouse_genomes_project 11 69508397 69508480 + Mir1934 miRNA miRNA MGP_C3HHeJ_T0097845.1 MGP_C3HHeJ_G0036057.1 mouse_genomes_project 11 73427818 73428768 - pseudogene pseudogene MGP_C3HHeJ_T0012588.1 MGP_C3HHeJ_G0010692.1 mouse_genomes_project 11 89204071 89204396 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100021.1 MGP_C3HHeJ_G0038215.1 mouse_genomes_project 11 68884023 68884158 + Snord118 snoRNA snoRNA MGP_C3HHeJ_T0003268.1 MGP_C3HHeJ_G0003015.1 mouse_genomes_project 11 111997799 111999837 + Gm11684 antisense antisense MGP_C3HHeJ_T0032308.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321288 103328607 + MGP_C3HHeJ_P0032308 Nbr1 protein_coding protein_coding MGP_C3HHeJ_T0032309.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321912 103351823 + MGP_C3HHeJ_P0032309 Nbr1 protein_coding protein_coding MGP_C3HHeJ_T0032310.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321912 103351823 + MGP_C3HHeJ_P0032310 Nbr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032311.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321921 103338418 + Nbr1 protein_coding processed_transcript MGP_C3HHeJ_T0032312.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321936 103351823 + MGP_C3HHeJ_P0032312 Nbr1 protein_coding protein_coding MGP_C3HHeJ_T0032313.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321955 103328606 + MGP_C3HHeJ_P0032313 Nbr1 protein_coding protein_coding MGP_C3HHeJ_T0032314.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103321969 103351822 + MGP_C3HHeJ_P0032314 Nbr1 protein_coding protein_coding MGP_C3HHeJ_T0032315.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103324926 103328623 + MGP_C3HHeJ_P0032315 Nbr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032316.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103325232 103350884 + MGP_C3HHeJ_P0032316 Nbr1 protein_coding protein_coding MGP_C3HHeJ_T0032317.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103328579 103328642 + Nbr1 protein_coding misc_RNA MGP_C3HHeJ_T0032318.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103331618 103335652 + Nbr1 protein_coding retained_intron MGP_C3HHeJ_T0032319.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103335903 103338324 + Nbr1 protein_coding retained_intron MGP_C3HHeJ_T0032320.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103338171 103339281 + Nbr1 protein_coding retained_intron MGP_C3HHeJ_T0032321.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103338564 103339290 + Nbr1 protein_coding processed_transcript MGP_C3HHeJ_T0032322.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103342104 103345094 + Nbr1 protein_coding retained_intron MGP_C3HHeJ_T0032323.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103344984 103346509 + Nbr1 protein_coding retained_intron MGP_C3HHeJ_T0032324.1 MGP_C3HHeJ_G0018958.1 mouse_genomes_project 11 103347701 103350660 + Nbr1 protein_coding retained_intron MGP_C3HHeJ_T0029130.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59182716 59183607 - Cops3 protein_coding processed_transcript MGP_C3HHeJ_T0029131.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59182716 59209868 - MGP_C3HHeJ_P0029131 Cops3 protein_coding protein_coding MGP_C3HHeJ_T0029132.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59190516 59207166 - MGP_C3HHeJ_P0029132 Cops3 protein_coding protein_coding MGP_C3HHeJ_T0029133.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59192442 59209868 - Cops3 protein_coding processed_transcript MGP_C3HHeJ_T0029134.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59193472 59203509 - Cops3 protein_coding processed_transcript MGP_C3HHeJ_T0029135.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59195362 59209868 - Cops3 protein_coding processed_transcript MGP_C3HHeJ_T0029136.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59203306 59209782 - MGP_C3HHeJ_P0029136 Cops3 protein_coding protein_coding MGP_C3HHeJ_T0029137.1 MGP_C3HHeJ_G0018160.1 mouse_genomes_project 11 59206868 59209842 - Cops3 protein_coding processed_transcript MGP_C3HHeJ_T0029424.1 MGP_C3HHeJ_G0018214.1 mouse_genomes_project 11 62336354 62336753 + MGP_C3HHeJ_P0029424 Gm10428 protein_coding protein_coding MGP_C3HHeJ_T0101500.1 MGP_C3HHeJ_G0039490.1 mouse_genomes_project 11 104609842 104641957 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0099989.1 MGP_C3HHeJ_G0038183.1 mouse_genomes_project 11 3664633 3664764 - Gm24313 snoRNA snoRNA MGP_C3HHeJ_T0029893.1 MGP_C3HHeJ_G0018327.1 mouse_genomes_project 11 69865890 69874455 + MGP_C3HHeJ_P0029893 Ctdnep1 protein_coding protein_coding MGP_C3HHeJ_T0029894.1 MGP_C3HHeJ_G0018327.1 mouse_genomes_project 11 69868660 69873966 + Ctdnep1 protein_coding retained_intron MGP_C3HHeJ_T0029895.1 MGP_C3HHeJ_G0018327.1 mouse_genomes_project 11 69873488 69874575 + Ctdnep1 protein_coding retained_intron MGP_C3HHeJ_T0029896.1 MGP_C3HHeJ_G0018327.1 mouse_genomes_project 11 69873508 69874820 + Ctdnep1 protein_coding processed_transcript MGP_C3HHeJ_T0028323.1 MGP_C3HHeJ_G0017917.1 mouse_genomes_project 11 39047256 39053630 + MGP_C3HHeJ_P0028323 Nudcd2 protein_coding protein_coding MGP_C3HHeJ_T0028324.1 MGP_C3HHeJ_G0017917.1 mouse_genomes_project 11 39047333 39050002 + Nudcd2 protein_coding processed_transcript MGP_C3HHeJ_T0028325.1 MGP_C3HHeJ_G0017917.1 mouse_genomes_project 11 39047535 39053134 + MGP_C3HHeJ_P0028325 Nudcd2 protein_coding protein_coding MGP_C3HHeJ_T0028326.1 MGP_C3HHeJ_G0017917.1 mouse_genomes_project 11 39047794 39053067 + Nudcd2 protein_coding processed_transcript MGP_C3HHeJ_T0028327.1 MGP_C3HHeJ_G0017917.1 mouse_genomes_project 11 39049895 39052848 + Nudcd2 protein_coding processed_transcript MGP_C3HHeJ_T0097847.1 MGP_C3HHeJ_G0036059.1 mouse_genomes_project 11 123468425 123468923 - pseudogene pseudogene MGP_C3HHeJ_T0012448.1 MGP_C3HHeJ_G0010552.1 mouse_genomes_project 11 33865589 33866268 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030925.1 MGP_C3HHeJ_G0018575.1 mouse_genomes_project 11 82522596 82524479 + MGP_C3HHeJ_P0030925 Ccl2 protein_coding protein_coding MGP_C3HHeJ_T0030926.1 MGP_C3HHeJ_G0018575.1 mouse_genomes_project 11 82522635 82524476 + Ccl2 protein_coding retained_intron MGP_C3HHeJ_T0033061.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117277885 117282542 - Btbd17 protein_coding processed_transcript MGP_C3HHeJ_T0033062.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117277885 117282579 - Btbd17 protein_coding processed_transcript MGP_C3HHeJ_T0033063.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117277885 117282566 - MGP_C3HHeJ_P0033063 Btbd17 protein_coding protein_coding MGP_C3HHeJ_T0033064.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117278774 117282614 - Btbd17 protein_coding processed_transcript MGP_C3HHeJ_T0033065.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117278953 117282568 - Btbd17 protein_coding processed_transcript MGP_C3HHeJ_T0033066.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117279100 117282542 - Btbd17 protein_coding processed_transcript MGP_C3HHeJ_T0033067.1 MGP_C3HHeJ_G0019111.1 mouse_genomes_project 11 117279137 117282561 - Btbd17 protein_coding processed_transcript MGP_C3HHeJ_T0003083.1 MGP_C3HHeJ_G0002865.1 mouse_genomes_project 11 44814085 44816805 + Gm12167 antisense antisense MGP_C3HHeJ_T0028263.1 MGP_C3HHeJ_G0017900.1 mouse_genomes_project 11 31542826 31574529 - MGP_C3HHeJ_P0028263 Gabrp protein_coding protein_coding MGP_C3HHeJ_T0028264.1 MGP_C3HHeJ_G0017900.1 mouse_genomes_project 11 31564994 31574531 - MGP_C3HHeJ_P0028264 Gabrp protein_coding protein_coding MGP_C3HHeJ_T0031135.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86051388 86208905 + MGP_C3HHeJ_P0031135 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031136.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86051389 86537520 + MGP_C3HHeJ_P0031136 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031137.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86051406 86069365 + MGP_C3HHeJ_P0031137 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031138.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86051433 86536811 + MGP_C3HHeJ_P0031138 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031139.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86051433 86536811 + MGP_C3HHeJ_P0031139 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031140.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86161756 86537519 + MGP_C3HHeJ_P0031140 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031141.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86166349 86192594 + MGP_C3HHeJ_P0031141 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031142.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86188168 86191515 + Bcas3 protein_coding processed_transcript MGP_C3HHeJ_T0031143.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86207540 86537519 + MGP_C3HHeJ_P0031143 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031144.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86207551 86537519 + MGP_C3HHeJ_P0031144 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031145.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86280945 86304251 + Bcas3 protein_coding processed_transcript MGP_C3HHeJ_T0031146.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86343435 86537516 + Bcas3 protein_coding processed_transcript MGP_C3HHeJ_T0031147.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86512263 86536851 + MGP_C3HHeJ_P0031147 Bcas3 protein_coding protein_coding MGP_C3HHeJ_T0031148.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86532873 86537107 + Bcas3 protein_coding processed_transcript MGP_C3HHeJ_T0031149.1 MGP_C3HHeJ_G0018636.1 mouse_genomes_project 11 86533426 86536768 + Bcas3 protein_coding processed_transcript MGP_C3HHeJ_T0030161.1 MGP_C3HHeJ_G0018377.1 mouse_genomes_project 11 71052311 71107244 - MGP_C3HHeJ_P0030161 Nlrp1a protein_coding protein_coding MGP_C3HHeJ_T0030162.1 MGP_C3HHeJ_G0018377.1 mouse_genomes_project 11 71052311 71158430 - MGP_C3HHeJ_P0030162 Nlrp1a protein_coding protein_coding MGP_C3HHeJ_T0030350.1 MGP_C3HHeJ_G0018444.1 mouse_genomes_project 11 74426763 74427711 - MGP_C3HHeJ_P0030350 Olfr410 protein_coding protein_coding MGP_C3HHeJ_T0028369.1 MGP_C3HHeJ_G0017927.1 mouse_genomes_project 11 41854319 41870584 + MGP_C3HHeJ_P0028369 C1qtnf2 protein_coding protein_coding MGP_C3HHeJ_T0028370.1 MGP_C3HHeJ_G0017927.1 mouse_genomes_project 11 41854349 41870604 + MGP_C3HHeJ_P0028370 C1qtnf2 protein_coding protein_coding MGP_C3HHeJ_T0028371.1 MGP_C3HHeJ_G0017927.1 mouse_genomes_project 11 41860808 41869943 + MGP_C3HHeJ_P0028371 C1qtnf2 protein_coding protein_coding MGP_C3HHeJ_T0003072.1 MGP_C3HHeJ_G0002854.1 mouse_genomes_project 11 31707313 31713467 + Gm12120 antisense antisense MGP_C3HHeJ_T0033190.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118151977 118169158 + MGP_C3HHeJ_P0033190 Nup85 protein_coding protein_coding MGP_C3HHeJ_T0033191.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118152068 118157435 + Nup85 protein_coding processed_transcript MGP_C3HHeJ_T0033192.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118157658 118167016 + MGP_C3HHeJ_P0033192 Nup85 protein_coding protein_coding MGP_C3HHeJ_T0033193.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118163352 118167212 + MGP_C3HHeJ_P0033193 Nup85 protein_coding protein_coding MGP_C3HHeJ_T0033194.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118165676 118166592 + Nup85 protein_coding processed_transcript MGP_C3HHeJ_T0033195.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118166268 118167207 + Nup85 protein_coding processed_transcript MGP_C3HHeJ_T0033196.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118166813 118169079 + Nup85 protein_coding processed_transcript MGP_C3HHeJ_T0033197.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118166920 118167451 + Nup85 protein_coding processed_transcript MGP_C3HHeJ_T0033198.1 MGP_C3HHeJ_G0019142.1 mouse_genomes_project 11 118168229 118168956 + Nup85 protein_coding processed_transcript MGP_C3HHeJ_T0009640.1 MGP_C3HHeJ_G0007773.1 mouse_genomes_project 11 86469825 86469912 - Mir5110 miRNA miRNA MGP_C3HHeJ_T0033083.1 MGP_C3HHeJ_G0019116.1 mouse_genomes_project 11 117467839 117470806 - MGP_C3HHeJ_P0033083 Cd300c protein_coding protein_coding MGP_C3HHeJ_T0000819.1 MGP_C3HHeJ_G0000760.1 mouse_genomes_project 11 84817441 84819757 + TEC TEC MGP_C3HHeJ_T0028627.1 MGP_C3HHeJ_G0018002.1 mouse_genomes_project 11 49389374 49601663 + MGP_C3HHeJ_P0028627 Adamts2 protein_coding protein_coding MGP_C3HHeJ_T0028628.1 MGP_C3HHeJ_G0018002.1 mouse_genomes_project 11 49390096 49590890 + MGP_C3HHeJ_P0028628 Adamts2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028629.1 MGP_C3HHeJ_G0018002.1 mouse_genomes_project 11 49567160 49567997 + Adamts2 protein_coding processed_transcript MGP_C3HHeJ_T0028630.1 MGP_C3HHeJ_G0018002.1 mouse_genomes_project 11 49573414 49574443 + Adamts2 protein_coding processed_transcript MGP_C3HHeJ_T0028631.1 MGP_C3HHeJ_G0018002.1 mouse_genomes_project 11 49587967 49590897 + Adamts2 protein_coding processed_transcript MGP_C3HHeJ_T0003059.1 MGP_C3HHeJ_G0002844.1 mouse_genomes_project 11 15334554 15340906 + Etaa1os antisense antisense MGP_C3HHeJ_T0003060.1 MGP_C3HHeJ_G0002844.1 mouse_genomes_project 11 15334588 15335736 + Etaa1os antisense antisense MGP_C3HHeJ_T0028645.1 MGP_C3HHeJ_G0018007.1 mouse_genomes_project 11 49699229 49711328 - MGP_C3HHeJ_P0028645 Zfp2 protein_coding protein_coding MGP_C3HHeJ_T0028646.1 MGP_C3HHeJ_G0018007.1 mouse_genomes_project 11 49699229 49716660 - MGP_C3HHeJ_P0028646 Zfp2 protein_coding protein_coding MGP_C3HHeJ_T0028647.1 MGP_C3HHeJ_G0018007.1 mouse_genomes_project 11 49699576 49716683 - MGP_C3HHeJ_P0028647 Zfp2 protein_coding protein_coding MGP_C3HHeJ_T0028648.1 MGP_C3HHeJ_G0018007.1 mouse_genomes_project 11 49701764 49716649 - Zfp2 protein_coding processed_transcript MGP_C3HHeJ_T0028649.1 MGP_C3HHeJ_G0018007.1 mouse_genomes_project 11 49705701 49716670 - Zfp2 protein_coding processed_transcript MGP_C3HHeJ_T0028650.1 MGP_C3HHeJ_G0018007.1 mouse_genomes_project 11 49706507 49716652 - Zfp2 protein_coding processed_transcript MGP_C3HHeJ_T0032393.1 MGP_C3HHeJ_G0018974.1 mouse_genomes_project 11 103986690 103990549 - MGP_C3HHeJ_P0032393 Tmem101 protein_coding protein_coding MGP_C3HHeJ_T0032394.1 MGP_C3HHeJ_G0018974.1 mouse_genomes_project 11 103988318 103990492 - Tmem101 protein_coding processed_transcript MGP_C3HHeJ_T0032395.1 MGP_C3HHeJ_G0018974.1 mouse_genomes_project 11 103989959 103990500 - Tmem101 protein_coding processed_transcript MGP_C3HHeJ_T0030804.1 MGP_C3HHeJ_G0018544.1 mouse_genomes_project 11 79163821 79184224 + MGP_C3HHeJ_P0030804 Lyrm9 protein_coding protein_coding MGP_C3HHeJ_T0030805.1 MGP_C3HHeJ_G0018544.1 mouse_genomes_project 11 79163841 79175582 + MGP_C3HHeJ_P0030805 Lyrm9 protein_coding protein_coding MGP_C3HHeJ_T0030806.1 MGP_C3HHeJ_G0018544.1 mouse_genomes_project 11 79163866 79176601 + Lyrm9 protein_coding processed_transcript MGP_C3HHeJ_T0033187.1 MGP_C3HHeJ_G0019141.1 mouse_genomes_project 11 118101283 118114013 - MGP_C3HHeJ_P0033187 Sumo2 protein_coding protein_coding MGP_C3HHeJ_T0033188.1 MGP_C3HHeJ_G0019141.1 mouse_genomes_project 11 118107865 118113913 - Sumo2 protein_coding retained_intron MGP_C3HHeJ_T0033189.1 MGP_C3HHeJ_G0019141.1 mouse_genomes_project 11 118112115 118113926 - Sumo2 protein_coding retained_intron MGP_C3HHeJ_T0030538.1 MGP_C3HHeJ_G0018486.1 mouse_genomes_project 11 76467472 76614246 - MGP_C3HHeJ_P0030538 Nxn protein_coding protein_coding MGP_C3HHeJ_T0030539.1 MGP_C3HHeJ_G0018486.1 mouse_genomes_project 11 76571952 76614174 - Nxn protein_coding processed_transcript MGP_C3HHeJ_T0027982.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20504327 20517598 + MGP_C3HHeJ_P0027982 Cct4 protein_coding protein_coding MGP_C3HHeJ_T0027983.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20504434 20508197 + MGP_C3HHeJ_P0027983 Cct4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027984.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20504447 20513692 + Cct4 protein_coding retained_intron MGP_C3HHeJ_T0027985.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20504458 20510904 + MGP_C3HHeJ_P0027985 Cct4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027986.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20504458 20516969 + MGP_C3HHeJ_P0027986 Cct4 protein_coding protein_coding MGP_C3HHeJ_T0027987.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20504460 20510957 + MGP_C3HHeJ_P0027987 Cct4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027988.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20509431 20510909 + Cct4 protein_coding retained_intron MGP_C3HHeJ_T0027989.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20514752 20515435 + Cct4 protein_coding processed_transcript MGP_C3HHeJ_T0027990.1 MGP_C3HHeJ_G0017838.1 mouse_genomes_project 11 20515751 20516673 + Cct4 protein_coding retained_intron MGP_C3HHeJ_T0033744.1 MGP_C3HHeJ_G0019244.1 mouse_genomes_project 11 123177170 123179683 + MGP_C3HHeJ_P0033744 0610009L18Rik protein_coding protein_coding MGP_C3HHeJ_T0100017.1 MGP_C3HHeJ_G0038211.1 mouse_genomes_project 11 62178000 62178072 + Snord49b snoRNA snoRNA MGP_C3HHeJ_T0030941.1 MGP_C3HHeJ_G0018583.1 mouse_genomes_project 11 83268841 83270432 + MGP_C3HHeJ_P0030941 Zfp830 protein_coding protein_coding MGP_C3HHeJ_T0033365.1 MGP_C3HHeJ_G0019169.1 mouse_genomes_project 11 118840878 118858816 - MGP_C3HHeJ_P0033365 Evpl protein_coding protein_coding MGP_C3HHeJ_T0098763.1 MGP_C3HHeJ_G0036957.1 mouse_genomes_project 11 22139915 22139988 - Gm22787 snRNA snRNA MGP_C3HHeJ_T0029826.1 MGP_C3HHeJ_G0018315.1 mouse_genomes_project 11 69726201 69733796 - MGP_C3HHeJ_P0029826 Tnk1 protein_coding protein_coding MGP_C3HHeJ_T0029827.1 MGP_C3HHeJ_G0018315.1 mouse_genomes_project 11 69726415 69732158 - MGP_C3HHeJ_P0029827 Tnk1 protein_coding protein_coding MGP_C3HHeJ_T0029828.1 MGP_C3HHeJ_G0018315.1 mouse_genomes_project 11 69727271 69730671 - MGP_C3HHeJ_P0029828 Tnk1 protein_coding protein_coding MGP_C3HHeJ_T0029829.1 MGP_C3HHeJ_G0018315.1 mouse_genomes_project 11 69729678 69733796 - MGP_C3HHeJ_P0029829 Tnk1 protein_coding protein_coding MGP_C3HHeJ_T0029830.1 MGP_C3HHeJ_G0018315.1 mouse_genomes_project 11 69730649 69733774 - MGP_C3HHeJ_P0029830 Tnk1 protein_coding protein_coding MGP_C3HHeJ_T0028143.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27888799 28061504 - MGP_C3HHeJ_P0028143 Sptbn1 protein_coding protein_coding MGP_C3HHeJ_T0028144.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27888800 27892653 - Sptbn1 protein_coding retained_intron MGP_C3HHeJ_T0028145.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27888800 28012974 - MGP_C3HHeJ_P0028145 Sptbn1 protein_coding protein_coding MGP_C3HHeJ_T0028146.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27890916 27894955 - Sptbn1 protein_coding retained_intron MGP_C3HHeJ_T0028147.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27896129 27991463 - MGP_C3HHeJ_P0028147 Sptbn1 protein_coding protein_coding MGP_C3HHeJ_T0028148.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27900424 27901914 - Sptbn1 protein_coding retained_intron MGP_C3HHeJ_T0028149.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 27900501 28060549 - MGP_C3HHeJ_P0028149 Sptbn1 protein_coding protein_coding MGP_C3HHeJ_T0028150.1 MGP_C3HHeJ_G0017868.1 mouse_genomes_project 11 28009860 28061510 - Sptbn1 protein_coding retained_intron MGP_C3HHeJ_T0031984.1 MGP_C3HHeJ_G0018843.1 mouse_genomes_project 11 100880093 100889475 - Krt26 protein_coding processed_transcript MGP_C3HHeJ_T0031985.1 MGP_C3HHeJ_G0018843.1 mouse_genomes_project 11 100880157 100889476 - MGP_C3HHeJ_P0031985 Krt26 protein_coding protein_coding MGP_C3HHeJ_T0029364.1 MGP_C3HHeJ_G0018204.1 mouse_genomes_project 11 61817861 61832660 - MGP_C3HHeJ_P0029364 Zswim7 protein_coding protein_coding MGP_C3HHeJ_T0030628.1 MGP_C3HHeJ_G0018507.1 mouse_genomes_project 11 78004000 78007220 - Cryba1 protein_coding retained_intron MGP_C3HHeJ_T0030629.1 MGP_C3HHeJ_G0018507.1 mouse_genomes_project 11 78004012 78010669 - MGP_C3HHeJ_P0030629 Cryba1 protein_coding protein_coding MGP_C3HHeJ_T0028457.1 MGP_C3HHeJ_G0017955.1 mouse_genomes_project 11 45227779 45263322 + MGP_C3HHeJ_P0028457 Havcr1 protein_coding protein_coding MGP_C3HHeJ_T0028458.1 MGP_C3HHeJ_G0017955.1 mouse_genomes_project 11 45238317 45280185 + MGP_C3HHeJ_P0028458 Havcr1 protein_coding protein_coding MGP_C3HHeJ_T0028459.1 MGP_C3HHeJ_G0017955.1 mouse_genomes_project 11 45249421 45280183 + MGP_C3HHeJ_P0028459 Havcr1 protein_coding protein_coding MGP_C3HHeJ_T0028460.1 MGP_C3HHeJ_G0017955.1 mouse_genomes_project 11 45250075 45280185 + MGP_C3HHeJ_P0028460 Havcr1 protein_coding protein_coding MGP_C3HHeJ_T0032378.1 MGP_C3HHeJ_G0018970.1 mouse_genomes_project 11 103886396 103919328 - MGP_C3HHeJ_P0032378 Mpp2 protein_coding protein_coding MGP_C3HHeJ_T0032379.1 MGP_C3HHeJ_G0018970.1 mouse_genomes_project 11 103886905 103913341 - MGP_C3HHeJ_P0032379 Mpp2 protein_coding protein_coding MGP_C3HHeJ_T0032380.1 MGP_C3HHeJ_G0018970.1 mouse_genomes_project 11 103891471 103913276 - Mpp2 protein_coding processed_transcript MGP_C3HHeJ_T0032381.1 MGP_C3HHeJ_G0018970.1 mouse_genomes_project 11 103894052 103916590 - Mpp2 protein_coding retained_intron MGP_C3HHeJ_T0032382.1 MGP_C3HHeJ_G0018970.1 mouse_genomes_project 11 103910543 103919280 - Mpp2 protein_coding processed_transcript MGP_C3HHeJ_T0032383.1 MGP_C3HHeJ_G0018970.1 mouse_genomes_project 11 103910597 103919268 - Mpp2 protein_coding processed_transcript MGP_C3HHeJ_T0032938.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111642919 111655095 + MGP_C3HHeJ_P0032938 Amz2 protein_coding protein_coding MGP_C3HHeJ_T0032939.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111642949 111671088 + MGP_C3HHeJ_P0032939 Amz2 protein_coding protein_coding MGP_C3HHeJ_T0032940.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111642955 111648045 + Amz2 protein_coding retained_intron MGP_C3HHeJ_T0032941.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111643197 111653904 + MGP_C3HHeJ_P0032941 Amz2 protein_coding protein_coding MGP_C3HHeJ_T0032942.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111649647 111651537 + Amz2 protein_coding processed_transcript MGP_C3HHeJ_T0032943.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111650691 111651642 + Amz2 protein_coding retained_intron MGP_C3HHeJ_T0032944.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111650904 111654198 + Amz2 protein_coding processed_transcript MGP_C3HHeJ_T0032945.1 MGP_C3HHeJ_G0019084.1 mouse_genomes_project 11 111657781 111671529 + Amz2 protein_coding processed_transcript MGP_C3HHeJ_T0100020.1 MGP_C3HHeJ_G0038214.1 mouse_genomes_project 11 62359667 62359810 + Gm24151 snoRNA snoRNA MGP_C3HHeJ_T0030333.1 MGP_C3HHeJ_G0018435.1 mouse_genomes_project 11 74122771 74135033 - MGP_C3HHeJ_P0030333 Olfr139 protein_coding protein_coding MGP_C3HHeJ_T0030334.1 MGP_C3HHeJ_G0018435.1 mouse_genomes_project 11 74122771 74123719 - MGP_C3HHeJ_P0030334 Olfr139 protein_coding protein_coding MGP_C3HHeJ_T0030335.1 MGP_C3HHeJ_G0018435.1 mouse_genomes_project 11 74128918 74132515 - Olfr139 protein_coding processed_transcript MGP_C3HHeJ_T0006109.1 MGP_C3HHeJ_G0005094.1 mouse_genomes_project 11 19981103 19988706 + Gm12051 lincRNA lincRNA MGP_C3HHeJ_T0028580.1 MGP_C3HHeJ_G0017993.1 mouse_genomes_project 11 48954735 48958640 + 3010026O09Rik protein_coding processed_transcript MGP_C3HHeJ_T0028581.1 MGP_C3HHeJ_G0017993.1 mouse_genomes_project 11 48955140 48989754 + MGP_C3HHeJ_P0028581 3010026O09Rik protein_coding protein_coding MGP_C3HHeJ_T0028582.1 MGP_C3HHeJ_G0017993.1 mouse_genomes_project 11 48955198 48986678 + MGP_C3HHeJ_P0028582 3010026O09Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006229.1 MGP_C3HHeJ_G0005191.1 mouse_genomes_project 11 88906598 88914745 + Gm15892 lincRNA lincRNA MGP_C3HHeJ_T0006230.1 MGP_C3HHeJ_G0005191.1 mouse_genomes_project 11 88913630 88914293 + Gm15892 lincRNA lincRNA MGP_C3HHeJ_T0006231.1 MGP_C3HHeJ_G0005191.1 mouse_genomes_project 11 88913690 88914721 + Gm15892 lincRNA lincRNA MGP_C3HHeJ_T0029669.1 MGP_C3HHeJ_G0018274.1 mouse_genomes_project 11 68937451 68962266 + MGP_C3HHeJ_P0029669 Aloxe3 protein_coding protein_coding MGP_C3HHeJ_T0029670.1 MGP_C3HHeJ_G0018274.1 mouse_genomes_project 11 68937770 68946975 + Aloxe3 protein_coding retained_intron MGP_C3HHeJ_T0029671.1 MGP_C3HHeJ_G0018274.1 mouse_genomes_project 11 68937958 68946040 + MGP_C3HHeJ_P0029671 Aloxe3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029672.1 MGP_C3HHeJ_G0018274.1 mouse_genomes_project 11 68945657 68946622 + Aloxe3 protein_coding retained_intron MGP_C3HHeJ_T0029673.1 MGP_C3HHeJ_G0018274.1 mouse_genomes_project 11 68945832 68955090 + Aloxe3 protein_coding retained_intron MGP_C3HHeJ_T0029674.1 MGP_C3HHeJ_G0018274.1 mouse_genomes_project 11 68947692 68955168 + Aloxe3 protein_coding retained_intron MGP_C3HHeJ_T0031158.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86934194 86982294 - MGP_C3HHeJ_P0031158 protein_coding protein_coding MGP_C3HHeJ_T0031159.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86935601 86981290 - MGP_C3HHeJ_P0031159 protein_coding protein_coding MGP_C3HHeJ_T0031160.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86941325 86953593 - MGP_C3HHeJ_P0031160 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031161.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86949281 86956460 - protein_coding retained_intron MGP_C3HHeJ_T0031162.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86958831 86982285 - protein_coding retained_intron MGP_C3HHeJ_T0031163.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86959771 86962841 - protein_coding retained_intron MGP_C3HHeJ_T0031164.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86974990 86982319 - MGP_C3HHeJ_P0031164 protein_coding protein_coding MGP_C3HHeJ_T0031165.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86979177 86982298 - MGP_C3HHeJ_P0031165 protein_coding protein_coding MGP_C3HHeJ_T0031166.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86980769 86982262 - MGP_C3HHeJ_P0031166 protein_coding protein_coding MGP_C3HHeJ_T0031167.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86981096 86982084 - protein_coding retained_intron MGP_C3HHeJ_T0031168.1 MGP_C3HHeJ_G0018641.1 mouse_genomes_project 11 86981186 86982309 - protein_coding processed_transcript MGP_C3HHeJ_T0028409.1 MGP_C3HHeJ_G0017938.1 mouse_genomes_project 11 44278958 44279509 + MGP_C3HHeJ_P0028409 protein_coding protein_coding MGP_C3HHeJ_T0012527.1 MGP_C3HHeJ_G0010631.1 mouse_genomes_project 11 67794538 67795216 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032078.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102117087 102136580 - MGP_C3HHeJ_P0032078 Nt5c3b protein_coding protein_coding MGP_C3HHeJ_T0032079.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102117087 102137299 - MGP_C3HHeJ_P0032079 Nt5c3b protein_coding protein_coding MGP_C3HHeJ_T0032081.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102124973 102136590 - MGP_C3HHeJ_P0032081 Nt5c3b protein_coding protein_coding MGP_C3HHeJ_T0032082.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102125476 102127105 - Nt5c3b protein_coding processed_transcript MGP_C3HHeJ_T0032083.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102128448 102136407 - Nt5c3b protein_coding processed_transcript MGP_C3HHeJ_T0032084.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102128485 102136564 - Nt5c3b protein_coding processed_transcript MGP_C3HHeJ_T0032085.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102129235 102136507 - Nt5c3b protein_coding processed_transcript MGP_C3HHeJ_T0032086.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102133782 102136420 - Nt5c3b protein_coding processed_transcript MGP_C3HHeJ_T0032087.1 MGP_C3HHeJ_G0018906.1 mouse_genomes_project 11 102135043 102136418 - Nt5c3b protein_coding processed_transcript MGP_C3HHeJ_T0029494.1 MGP_C3HHeJ_G0018233.1 mouse_genomes_project 11 65888542 66200509 - MGP_C3HHeJ_P0029494 Shisa6 protein_coding protein_coding MGP_C3HHeJ_T0029495.1 MGP_C3HHeJ_G0018233.1 mouse_genomes_project 11 65893960 66200509 - MGP_C3HHeJ_P0029495 Shisa6 protein_coding protein_coding MGP_C3HHeJ_T0029496.1 MGP_C3HHeJ_G0018233.1 mouse_genomes_project 11 66048904 66177381 - Shisa6 protein_coding processed_transcript MGP_C3HHeJ_T0031030.1 MGP_C3HHeJ_G0018610.1 mouse_genomes_project 11 84260115 84261627 - MGP_C3HHeJ_P0031030 Ccl3 protein_coding protein_coding MGP_C3HHeJ_T0012606.1 MGP_C3HHeJ_G0010710.1 mouse_genomes_project 11 99415591 99416035 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027962.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19483784 19780571 - MGP_C3HHeJ_P0027962 Ehbp1 protein_coding protein_coding MGP_C3HHeJ_T0027963.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19483784 19779614 - MGP_C3HHeJ_P0027963 Ehbp1 protein_coding protein_coding MGP_C3HHeJ_T0027964.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19483786 19780571 - MGP_C3HHeJ_P0027964 Ehbp1 protein_coding protein_coding MGP_C3HHeJ_T0027965.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19589621 19652022 - Ehbp1 protein_coding processed_transcript MGP_C3HHeJ_T0027966.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19625551 19779648 - MGP_C3HHeJ_P0027966 Ehbp1 protein_coding protein_coding MGP_C3HHeJ_T0027967.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19648052 19650426 - Ehbp1 protein_coding processed_transcript MGP_C3HHeJ_T0027968.1 MGP_C3HHeJ_G0017831.1 mouse_genomes_project 11 19721155 19836542 - Ehbp1 protein_coding processed_transcript MGP_C3HHeJ_T0028606.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49170221 49180017 + MGP_C3HHeJ_P0028606 Hnrnph1 protein_coding protein_coding MGP_C3HHeJ_T0028607.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49170950 49180016 + MGP_C3HHeJ_P0028607 Hnrnph1 protein_coding protein_coding MGP_C3HHeJ_T0028608.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49170982 49180017 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028609.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49170996 49176095 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028610.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171000 49179410 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028611.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171000 49176681 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028612.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171000 49180017 + MGP_C3HHeJ_P0028612 Hnrnph1 protein_coding protein_coding MGP_C3HHeJ_T0028613.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171522 49175626 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028614.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171522 49173679 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028615.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171522 49174459 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028616.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49171532 49179412 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028617.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49176435 49177749 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028618.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49176575 49177522 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028619.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49176667 49179810 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028620.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49176730 49177409 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028621.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49177300 49178182 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028622.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49177319 49179878 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0028623.1 MGP_C3HHeJ_G0018000.1 mouse_genomes_project 11 49178451 49179714 + Hnrnph1 protein_coding processed_transcript MGP_C3HHeJ_T0012615.1 MGP_C3HHeJ_G0010719.1 mouse_genomes_project 11 103049927 103050566 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030985.1 MGP_C3HHeJ_G0018595.1 mouse_genomes_project 11 83738389 83755074 + MGP_C3HHeJ_P0030985 Slfn4 protein_coding protein_coding MGP_C3HHeJ_T0030986.1 MGP_C3HHeJ_G0018595.1 mouse_genomes_project 11 83738397 83754902 + MGP_C3HHeJ_P0030986 Slfn4 protein_coding protein_coding MGP_C3HHeJ_T0031668.1 MGP_C3HHeJ_G0018769.1 mouse_genomes_project 11 98214205 98215914 + protein_coding retained_intron MGP_C3HHeJ_T0031669.1 MGP_C3HHeJ_G0018769.1 mouse_genomes_project 11 98214211 98227900 + MGP_C3HHeJ_P0031669 protein_coding protein_coding MGP_C3HHeJ_T0031670.1 MGP_C3HHeJ_G0018769.1 mouse_genomes_project 11 98214216 98218477 + MGP_C3HHeJ_P0031670 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031671.1 MGP_C3HHeJ_G0018769.1 mouse_genomes_project 11 98218223 98221365 + protein_coding retained_intron MGP_C3HHeJ_T0031672.1 MGP_C3HHeJ_G0018769.1 mouse_genomes_project 11 98218454 98227900 + MGP_C3HHeJ_P0031672 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031386.1 MGP_C3HHeJ_G0018697.1 mouse_genomes_project 11 92604976 92607220 - MGP_C3HHeJ_P0031386 Kif2b protein_coding protein_coding MGP_C3HHeJ_T0011220.1 MGP_C3HHeJ_G0009353.1 mouse_genomes_project 11 104315407 104315658 - Gm23563 misc_RNA misc_RNA MGP_C3HHeJ_T0029712.1 MGP_C3HHeJ_G0018282.1 mouse_genomes_project 11 69186269 69191623 + MGP_C3HHeJ_P0029712 Gm17305 protein_coding protein_coding MGP_C3HHeJ_T0031533.1 MGP_C3HHeJ_G0018731.1 mouse_genomes_project 11 96317379 96350572 - MGP_C3HHeJ_P0031533 Itga3 protein_coding protein_coding MGP_C3HHeJ_T0031534.1 MGP_C3HHeJ_G0018731.1 mouse_genomes_project 11 96317380 96343093 - MGP_C3HHeJ_P0031534 Itga3 protein_coding protein_coding MGP_C3HHeJ_T0031535.1 MGP_C3HHeJ_G0018731.1 mouse_genomes_project 11 96318513 96350819 - MGP_C3HHeJ_P0031535 Itga3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031536.1 MGP_C3HHeJ_G0018731.1 mouse_genomes_project 11 96326239 96329031 - Itga3 protein_coding retained_intron MGP_C3HHeJ_T0031537.1 MGP_C3HHeJ_G0018731.1 mouse_genomes_project 11 96331106 96335045 - Itga3 protein_coding retained_intron MGP_C3HHeJ_T0031538.1 MGP_C3HHeJ_G0018731.1 mouse_genomes_project 11 96335933 96350655 - MGP_C3HHeJ_P0031538 Itga3 protein_coding protein_coding MGP_C3HHeJ_T0029326.1 MGP_C3HHeJ_G0018196.1 mouse_genomes_project 11 61177610 61199296 + MGP_C3HHeJ_P0029326 Grap protein_coding protein_coding MGP_C3HHeJ_T0029327.1 MGP_C3HHeJ_G0018196.1 mouse_genomes_project 11 61194509 61195344 + Grap protein_coding processed_transcript MGP_C3HHeJ_T0012489.1 MGP_C3HHeJ_G0010593.1 mouse_genomes_project 11 53249386 53250517 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028570.1 MGP_C3HHeJ_G0017991.1 mouse_genomes_project 11 48798516 48880481 + MGP_C3HHeJ_P0028570 Rnf130 protein_coding protein_coding MGP_C3HHeJ_T0028571.1 MGP_C3HHeJ_G0017991.1 mouse_genomes_project 11 48868918 48880675 + Rnf130 protein_coding processed_transcript MGP_C3HHeJ_T0029200.1 MGP_C3HHeJ_G0018172.1 mouse_genomes_project 11 59879236 59937825 + MGP_C3HHeJ_P0029200 Myo15 protein_coding protein_coding MGP_C3HHeJ_T0029201.1 MGP_C3HHeJ_G0018172.1 mouse_genomes_project 11 59879236 59937825 + MGP_C3HHeJ_P0029201 Myo15 protein_coding protein_coding MGP_C3HHeJ_T0029202.1 MGP_C3HHeJ_G0018172.1 mouse_genomes_project 11 59879236 59937825 + MGP_C3HHeJ_P0029202 Myo15 protein_coding protein_coding MGP_C3HHeJ_T0029203.1 MGP_C3HHeJ_G0018172.1 mouse_genomes_project 11 59889699 59919318 + MGP_C3HHeJ_P0029203 Myo15 protein_coding protein_coding MGP_C3HHeJ_T0029204.1 MGP_C3HHeJ_G0018172.1 mouse_genomes_project 11 59919139 59931617 + Myo15 protein_coding retained_intron MGP_C3HHeJ_T0027671.1 MGP_C3HHeJ_G0017761.1 mouse_genomes_project 11 2790895 2792989 - MGP_C3HHeJ_P0027671 Pgam2 protein_coding protein_coding MGP_C3HHeJ_T0012510.1 MGP_C3HHeJ_G0010614.1 mouse_genomes_project 11 59856040 59857439 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003241.1 MGP_C3HHeJ_G0002993.1 mouse_genomes_project 11 105272666 105278060 + Arhgap27os2 antisense antisense MGP_C3HHeJ_T0003200.1 MGP_C3HHeJ_G0002960.1 mouse_genomes_project 11 96658121 96666887 - Gm29477 antisense antisense MGP_C3HHeJ_T0012506.1 MGP_C3HHeJ_G0010610.1 mouse_genomes_project 11 58824121 58824426 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009613.1 MGP_C3HHeJ_G0007746.1 mouse_genomes_project 11 69758728 69758791 - Mir6924 miRNA miRNA MGP_C3HHeJ_T0009565.1 MGP_C3HHeJ_G0007698.1 mouse_genomes_project 11 1977785 1977889 + miRNA miRNA MGP_C3HHeJ_T0030326.1 MGP_C3HHeJ_G0018430.1 mouse_genomes_project 11 73965109 73966042 - MGP_C3HHeJ_P0030326 Olfr394 protein_coding protein_coding MGP_C3HHeJ_T0098800.1 MGP_C3HHeJ_G0036994.1 mouse_genomes_project 11 86189359 86189503 + Gm23765 snRNA snRNA MGP_C3HHeJ_T0012369.1 MGP_C3HHeJ_G0010473.1 mouse_genomes_project 11 7426934 7427849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016977.1 MGP_C3HHeJ_G0014936.1 mouse_genomes_project 11 59088388 59102771 - 1700007J10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016978.1 MGP_C3HHeJ_G0014936.1 mouse_genomes_project 11 59088388 59095223 - 1700007J10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0028710.1 MGP_C3HHeJ_G0018025.1 mouse_genomes_project 11 50595130 50598608 - MGP_C3HHeJ_P0028710 0610009B22Rik protein_coding protein_coding MGP_C3HHeJ_T0028711.1 MGP_C3HHeJ_G0018025.1 mouse_genomes_project 11 50595130 50598387 - MGP_C3HHeJ_P0028711 0610009B22Rik protein_coding protein_coding MGP_C3HHeJ_T0027809.1 MGP_C3HHeJ_G0017795.1 mouse_genomes_project 11 6304053 6338115 + protein_coding processed_transcript MGP_C3HHeJ_T0027810.1 MGP_C3HHeJ_G0017795.1 mouse_genomes_project 11 6304053 6827231 + MGP_C3HHeJ_P0027810 protein_coding protein_coding MGP_C3HHeJ_T0027811.1 MGP_C3HHeJ_G0017795.1 mouse_genomes_project 11 6305563 6374184 + MGP_C3HHeJ_P0027811 protein_coding protein_coding MGP_C3HHeJ_T0027812.1 MGP_C3HHeJ_G0017795.1 mouse_genomes_project 11 6366527 6826351 + MGP_C3HHeJ_P0027812 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027585.1 MGP_C3HHeJ_G0017744.1 mouse_genomes_project 11 1799407 1823721 + MGP_C3HHeJ_P0027585 Nipsnap1 protein_coding protein_coding MGP_C3HHeJ_T0027586.1 MGP_C3HHeJ_G0017744.1 mouse_genomes_project 11 1799455 1823138 + MGP_C3HHeJ_P0027586 Nipsnap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027587.1 MGP_C3HHeJ_G0017744.1 mouse_genomes_project 11 1799461 1810801 + Nipsnap1 protein_coding processed_transcript MGP_C3HHeJ_T0027588.1 MGP_C3HHeJ_G0017744.1 mouse_genomes_project 11 1809590 1818617 + MGP_C3HHeJ_P0027588 Nipsnap1 protein_coding protein_coding MGP_C3HHeJ_T0027589.1 MGP_C3HHeJ_G0017744.1 mouse_genomes_project 11 1809602 1819459 + Nipsnap1 protein_coding processed_transcript MGP_C3HHeJ_T0027590.1 MGP_C3HHeJ_G0017744.1 mouse_genomes_project 11 1809660 1810513 + Nipsnap1 protein_coding processed_transcript MGP_C3HHeJ_T0029865.1 MGP_C3HHeJ_G0018322.1 mouse_genomes_project 11 69797305 69801846 - MGP_C3HHeJ_P0029865 Eif5a protein_coding protein_coding MGP_C3HHeJ_T0029866.1 MGP_C3HHeJ_G0018322.1 mouse_genomes_project 11 69798041 69801504 - MGP_C3HHeJ_P0029866 Eif5a protein_coding protein_coding MGP_C3HHeJ_T0100031.1 MGP_C3HHeJ_G0038225.1 mouse_genomes_project 11 77498654 77498742 - Gm24989 snoRNA snoRNA MGP_C3HHeJ_T0003135.1 MGP_C3HHeJ_G0002910.1 mouse_genomes_project 11 62579522 62597818 - Cdrt4os1 antisense antisense MGP_C3HHeJ_T0003136.1 MGP_C3HHeJ_G0002910.1 mouse_genomes_project 11 62588161 62597824 - Cdrt4os1 antisense antisense MGP_C3HHeJ_T0032009.1 MGP_C3HHeJ_G0018865.1 mouse_genomes_project 11 101226458 101227036 - MGP_C3HHeJ_P0032009 Gm11555 protein_coding protein_coding MGP_C3HHeJ_T0029274.1 MGP_C3HHeJ_G0018189.1 mouse_genomes_project 11 60814313 60857634 - MGP_C3HHeJ_P0029274 Slc47a2 protein_coding protein_coding MGP_C3HHeJ_T0029275.1 MGP_C3HHeJ_G0018189.1 mouse_genomes_project 11 60816609 60857624 - MGP_C3HHeJ_P0029275 Slc47a2 protein_coding protein_coding MGP_C3HHeJ_T0029276.1 MGP_C3HHeJ_G0018189.1 mouse_genomes_project 11 60851778 60857358 - Slc47a2 protein_coding processed_transcript MGP_C3HHeJ_T0028762.1 MGP_C3HHeJ_G0018037.1 mouse_genomes_project 11 51757014 52194049 + MGP_C3HHeJ_P0028762 Fstl4 protein_coding protein_coding MGP_C3HHeJ_T0006220.1 MGP_C3HHeJ_G0005184.1 mouse_genomes_project 11 84439134 84472695 - Gm12576 lincRNA lincRNA MGP_C3HHeJ_T0012515.1 MGP_C3HHeJ_G0010619.1 mouse_genomes_project 11 60715029 60715476 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030342.1 MGP_C3HHeJ_G0018439.1 mouse_genomes_project 11 74236072 74237084 + MGP_C3HHeJ_P0030342 Olfr402 protein_coding protein_coding MGP_C3HHeJ_T0009681.1 MGP_C3HHeJ_G0007814.1 mouse_genomes_project 11 119738719 119738796 + Gm24323 miRNA miRNA MGP_C3HHeJ_T0006100.1 MGP_C3HHeJ_G0005086.1 mouse_genomes_project 11 15829932 15858023 - Gm12022 lincRNA lincRNA MGP_C3HHeJ_T0029420.1 MGP_C3HHeJ_G0018213.1 mouse_genomes_project 11 62282001 62312885 - MGP_C3HHeJ_P0029420 Zfp287 protein_coding protein_coding MGP_C3HHeJ_T0029421.1 MGP_C3HHeJ_G0018213.1 mouse_genomes_project 11 62294788 62312841 - MGP_C3HHeJ_P0029421 Zfp287 protein_coding protein_coding MGP_C3HHeJ_T0029422.1 MGP_C3HHeJ_G0018213.1 mouse_genomes_project 11 62302568 62309631 - MGP_C3HHeJ_P0029422 Zfp287 protein_coding protein_coding MGP_C3HHeJ_T0029423.1 MGP_C3HHeJ_G0018213.1 mouse_genomes_project 11 62307682 62312905 - Zfp287 protein_coding retained_intron MGP_C3HHeJ_T0028758.1 MGP_C3HHeJ_G0018036.1 mouse_genomes_project 11 51358706 51366627 + 9530068E07Rik protein_coding processed_transcript MGP_C3HHeJ_T0028759.1 MGP_C3HHeJ_G0018036.1 mouse_genomes_project 11 51358706 51371277 + MGP_C3HHeJ_P0028759 9530068E07Rik protein_coding protein_coding MGP_C3HHeJ_T0028760.1 MGP_C3HHeJ_G0018036.1 mouse_genomes_project 11 51358706 51371282 + MGP_C3HHeJ_P0028760 9530068E07Rik protein_coding protein_coding MGP_C3HHeJ_T0028761.1 MGP_C3HHeJ_G0018036.1 mouse_genomes_project 11 51358924 51365659 + 9530068E07Rik protein_coding processed_transcript MGP_C3HHeJ_T0006115.1 MGP_C3HHeJ_G0005100.1 mouse_genomes_project 11 21642367 21643176 + Gm12063 lincRNA lincRNA MGP_C3HHeJ_T0006292.1 MGP_C3HHeJ_G0005236.1 mouse_genomes_project 11 119710052 119711883 + Gm11731 lincRNA lincRNA MGP_C3HHeJ_T0012350.1 MGP_C3HHeJ_G0010454.1 mouse_genomes_project 11 1126683 1127195 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012649.1 MGP_C3HHeJ_G0010753.1 mouse_genomes_project 11 117437862 117438266 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030325.1 MGP_C3HHeJ_G0018429.1 mouse_genomes_project 11 73928036 73928975 - MGP_C3HHeJ_P0030325 Olfr393 protein_coding protein_coding MGP_C3HHeJ_T0009624.1 MGP_C3HHeJ_G0007757.1 mouse_genomes_project 11 72975329 72975410 + Gm44467 miRNA miRNA MGP_C3HHeJ_T0003166.1 MGP_C3HHeJ_G0002935.1 mouse_genomes_project 11 79867095 79869402 - AU040972 antisense antisense MGP_C3HHeJ_T0029365.1 MGP_C3HHeJ_G0018205.1 mouse_genomes_project 11 61832757 61833873 + Ttc19 protein_coding processed_transcript MGP_C3HHeJ_T0029366.1 MGP_C3HHeJ_G0018205.1 mouse_genomes_project 11 61832766 61865365 + MGP_C3HHeJ_P0029366 Ttc19 protein_coding protein_coding MGP_C3HHeJ_T0029367.1 MGP_C3HHeJ_G0018205.1 mouse_genomes_project 11 61832768 61866545 + MGP_C3HHeJ_P0029367 Ttc19 protein_coding protein_coding MGP_C3HHeJ_T0029368.1 MGP_C3HHeJ_G0018205.1 mouse_genomes_project 11 61834958 61880178 + MGP_C3HHeJ_P0029368 Ttc19 protein_coding protein_coding MGP_C3HHeJ_T0029369.1 MGP_C3HHeJ_G0018205.1 mouse_genomes_project 11 61860309 61880485 + Ttc19 protein_coding processed_transcript MGP_C3HHeJ_T0032032.1 MGP_C3HHeJ_G0018888.1 mouse_genomes_project 11 101692661 101696619 - MGP_C3HHeJ_P0032032 Krt31 protein_coding protein_coding MGP_C3HHeJ_T0009654.1 MGP_C3HHeJ_G0007787.1 mouse_genomes_project 11 99096616 99096687 + Mir6927 miRNA miRNA MGP_C3HHeJ_T0031748.1 MGP_C3HHeJ_G0018787.1 mouse_genomes_project 11 98901780 98911422 - MGP_C3HHeJ_P0031748 4933428G20Rik protein_coding protein_coding MGP_C3HHeJ_T0009669.1 MGP_C3HHeJ_G0007802.1 mouse_genomes_project 11 106203098 106203169 - miRNA miRNA MGP_C3HHeJ_T0028425.1 MGP_C3HHeJ_G0017944.1 mouse_genomes_project 11 44607672 44629540 - MGP_C3HHeJ_P0028425 Nipal4 protein_coding protein_coding MGP_C3HHeJ_T0031176.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87234226 87282876 - MGP_C3HHeJ_P0031176 Rps6kb1 protein_coding protein_coding MGP_C3HHeJ_T0031177.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87237395 87282876 - Rps6kb1 protein_coding retained_intron MGP_C3HHeJ_T0031178.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87237959 87249056 - Rps6kb1 protein_coding processed_transcript MGP_C3HHeJ_T0031179.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87251039 87257459 - Rps6kb1 protein_coding processed_transcript MGP_C3HHeJ_T0031180.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87251404 87282845 - MGP_C3HHeJ_P0031180 Rps6kb1 protein_coding protein_coding MGP_C3HHeJ_T0031181.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87257063 87270209 - Rps6kb1 protein_coding retained_intron MGP_C3HHeJ_T0031182.1 MGP_C3HHeJ_G0018644.1 mouse_genomes_project 11 87270140 87282836 - MGP_C3HHeJ_P0031182 Rps6kb1 protein_coding protein_coding MGP_C3HHeJ_T0009584.1 MGP_C3HHeJ_G0007717.1 mouse_genomes_project 11 42897016 42897066 + Gm22121 miRNA miRNA MGP_C3HHeJ_T0006110.1 MGP_C3HHeJ_G0005095.1 mouse_genomes_project 11 20101196 20112791 - Gm26829 lincRNA lincRNA MGP_C3HHeJ_T0006163.1 MGP_C3HHeJ_G0005140.1 mouse_genomes_project 11 50878519 51226966 - lincRNA lincRNA MGP_C3HHeJ_T0032196.1 MGP_C3HHeJ_G0018931.1 mouse_genomes_project 11 102816055 102819669 - MGP_C3HHeJ_P0032196 Psmc3ip protein_coding protein_coding MGP_C3HHeJ_T0032197.1 MGP_C3HHeJ_G0018931.1 mouse_genomes_project 11 102816364 102819633 - Psmc3ip protein_coding retained_intron MGP_C3HHeJ_T0032198.1 MGP_C3HHeJ_G0018931.1 mouse_genomes_project 11 102816389 102818393 - Psmc3ip protein_coding retained_intron MGP_C3HHeJ_T0032199.1 MGP_C3HHeJ_G0018931.1 mouse_genomes_project 11 102816719 102819609 - MGP_C3HHeJ_P0032199 Psmc3ip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030221.1 MGP_C3HHeJ_G0018394.1 mouse_genomes_project 11 72455089 72495245 - MGP_C3HHeJ_P0030221 Spns2 protein_coding protein_coding MGP_C3HHeJ_T0030222.1 MGP_C3HHeJ_G0018394.1 mouse_genomes_project 11 72455093 72457993 - Spns2 protein_coding retained_intron MGP_C3HHeJ_T0030223.1 MGP_C3HHeJ_G0018394.1 mouse_genomes_project 11 72456059 72459802 - Spns2 protein_coding processed_transcript MGP_C3HHeJ_T0030224.1 MGP_C3HHeJ_G0018394.1 mouse_genomes_project 11 72456183 72460073 - MGP_C3HHeJ_P0030224 Spns2 protein_coding protein_coding MGP_C3HHeJ_T0030225.1 MGP_C3HHeJ_G0018394.1 mouse_genomes_project 11 72456292 72457570 - Spns2 protein_coding processed_transcript MGP_C3HHeJ_T0030226.1 MGP_C3HHeJ_G0018394.1 mouse_genomes_project 11 72462480 72478479 - Spns2 protein_coding processed_transcript MGP_C3HHeJ_T0031061.1 MGP_C3HHeJ_G0018620.1 mouse_genomes_project 11 84705265 84758422 - MGP_C3HHeJ_P0031061 Tada2a protein_coding protein_coding MGP_C3HHeJ_T0031062.1 MGP_C3HHeJ_G0018620.1 mouse_genomes_project 11 84705877 84709328 - Tada2a protein_coding processed_transcript MGP_C3HHeJ_T0031063.1 MGP_C3HHeJ_G0018620.1 mouse_genomes_project 11 84705978 84721359 - MGP_C3HHeJ_P0031063 Tada2a protein_coding protein_coding MGP_C3HHeJ_T0031064.1 MGP_C3HHeJ_G0018620.1 mouse_genomes_project 11 84708409 84715050 - Tada2a protein_coding processed_transcript MGP_C3HHeJ_T0031065.1 MGP_C3HHeJ_G0018620.1 mouse_genomes_project 11 84711788 84715102 - Tada2a protein_coding processed_transcript MGP_C3HHeJ_T0032636.1 MGP_C3HHeJ_G0019018.1 mouse_genomes_project 11 105608374 105632924 - MGP_C3HHeJ_P0032636 Gosr2 protein_coding protein_coding MGP_C3HHeJ_T0032637.1 MGP_C3HHeJ_G0019018.1 mouse_genomes_project 11 105611773 105632720 - MGP_C3HHeJ_P0032637 Gosr2 protein_coding protein_coding MGP_C3HHeJ_T0032638.1 MGP_C3HHeJ_G0019018.1 mouse_genomes_project 11 105611980 105632724 - Gosr2 protein_coding processed_transcript MGP_C3HHeJ_T0098267.1 MGP_C3HHeJ_G0036479.1 mouse_genomes_project 11 69172795 69172939 - Gm22442 scaRNA scaRNA MGP_C3HHeJ_T0029397.1 MGP_C3HHeJ_G0018208.1 mouse_genomes_project 11 62095366 62110508 - MGP_C3HHeJ_P0029397 Cenpv protein_coding protein_coding MGP_C3HHeJ_T0029398.1 MGP_C3HHeJ_G0018208.1 mouse_genomes_project 11 62095369 62098317 - Cenpv protein_coding retained_intron MGP_C3HHeJ_T0029399.1 MGP_C3HHeJ_G0018208.1 mouse_genomes_project 11 62095563 62109732 - Cenpv protein_coding processed_transcript MGP_C3HHeJ_T0029400.1 MGP_C3HHeJ_G0018208.1 mouse_genomes_project 11 62097913 62109876 - Cenpv protein_coding processed_transcript MGP_C3HHeJ_T0029401.1 MGP_C3HHeJ_G0018208.1 mouse_genomes_project 11 62104307 62110250 - MGP_C3HHeJ_P0029401 Cenpv protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029402.1 MGP_C3HHeJ_G0018208.1 mouse_genomes_project 11 62104538 62110250 - Cenpv protein_coding processed_transcript MGP_C3HHeJ_T0028840.1 MGP_C3HHeJ_G0018060.1 mouse_genomes_project 11 53070081 53114692 - MGP_C3HHeJ_P0028840 Slc22a4 protein_coding protein_coding MGP_C3HHeJ_T0028841.1 MGP_C3HHeJ_G0018060.1 mouse_genomes_project 11 53079017 53094770 - Slc22a4 protein_coding processed_transcript MGP_C3HHeJ_T0028842.1 MGP_C3HHeJ_G0018060.1 mouse_genomes_project 11 53101069 53114554 - Slc22a4 protein_coding processed_transcript MGP_C3HHeJ_T0032013.1 MGP_C3HHeJ_G0018869.1 mouse_genomes_project 11 101317149 101317227 - MGP_C3HHeJ_P0032013 Gm14180 protein_coding protein_coding MGP_C3HHeJ_T0027529.1 MGP_C3HHeJ_G0017730.1 mouse_genomes_project 11 1033056 1039599 - Ccdc157 protein_coding processed_transcript MGP_C3HHeJ_T0027530.1 MGP_C3HHeJ_G0017730.1 mouse_genomes_project 11 1033056 1052149 - MGP_C3HHeJ_P0027530 Ccdc157 protein_coding protein_coding MGP_C3HHeJ_T0027531.1 MGP_C3HHeJ_G0017730.1 mouse_genomes_project 11 1033056 1052151 - MGP_C3HHeJ_P0027531 Ccdc157 protein_coding protein_coding MGP_C3HHeJ_T0027532.1 MGP_C3HHeJ_G0017730.1 mouse_genomes_project 11 1040747 1052076 - Ccdc157 protein_coding processed_transcript MGP_C3HHeJ_T0027533.1 MGP_C3HHeJ_G0017730.1 mouse_genomes_project 11 1041941 1052076 - Ccdc157 protein_coding processed_transcript MGP_C3HHeJ_T0027534.1 MGP_C3HHeJ_G0017730.1 mouse_genomes_project 11 1043424 1052110 - Ccdc157 protein_coding processed_transcript MGP_C3HHeJ_T0003082.1 MGP_C3HHeJ_G0002864.1 mouse_genomes_project 11 44603413 44604531 - Gm16034 antisense antisense MGP_C3HHeJ_T0032106.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102282070 102284039 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0032107.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102282070 102319699 - MGP_C3HHeJ_P0032107 Dnajc7 protein_coding protein_coding MGP_C3HHeJ_T0032108.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102282516 102284745 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0032109.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102283592 102290258 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0032110.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102290116 102319108 - MGP_C3HHeJ_P0032110 Dnajc7 protein_coding protein_coding MGP_C3HHeJ_T0032111.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102290123 102319129 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0032112.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102290248 102295943 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0032113.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102292193 102313089 - MGP_C3HHeJ_P0032113 Dnajc7 protein_coding protein_coding MGP_C3HHeJ_T0032114.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102296661 102319111 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0032115.1 MGP_C3HHeJ_G0018912.1 mouse_genomes_project 11 102297570 102319191 - Dnajc7 protein_coding processed_transcript MGP_C3HHeJ_T0100033.1 MGP_C3HHeJ_G0038227.1 mouse_genomes_project 11 78486281 78486346 - Snord42a snoRNA snoRNA MGP_C3HHeJ_T0098770.1 MGP_C3HHeJ_G0036964.1 mouse_genomes_project 11 39312164 39312320 - Gm24446 snRNA snRNA MGP_C3HHeJ_T0006141.1 MGP_C3HHeJ_G0005120.1 mouse_genomes_project 11 32161785 32163380 + Gm12121 lincRNA lincRNA MGP_C3HHeJ_T0031029.1 MGP_C3HHeJ_G0018609.1 mouse_genomes_project 11 84257291 84257867 - MGP_C3HHeJ_P0031029 Rpl9-ps1 protein_coding protein_coding MGP_C3HHeJ_T0027565.1 MGP_C3HHeJ_G0017739.1 mouse_genomes_project 11 1548658 1594570 + MGP_C3HHeJ_P0027565 Ascc2 protein_coding protein_coding MGP_C3HHeJ_T0027566.1 MGP_C3HHeJ_G0017739.1 mouse_genomes_project 11 1548658 1596884 + MGP_C3HHeJ_P0027566 Ascc2 protein_coding protein_coding MGP_C3HHeJ_T0032748.1 MGP_C3HHeJ_G0019043.1 mouse_genomes_project 11 108103028 108110579 + MGP_C3HHeJ_P0032748 Taco1 protein_coding protein_coding MGP_C3HHeJ_T0003291.1 MGP_C3HHeJ_G0003036.1 mouse_genomes_project 11 123326190 123329180 - Gm11788 antisense antisense MGP_C3HHeJ_T0033721.1 MGP_C3HHeJ_G0019240.1 mouse_genomes_project 11 122903761 122905539 + MGP_C3HHeJ_P0033721 1810043H04Rik protein_coding protein_coding MGP_C3HHeJ_T0033722.1 MGP_C3HHeJ_G0019240.1 mouse_genomes_project 11 122903777 122905197 + MGP_C3HHeJ_P0033722 1810043H04Rik protein_coding protein_coding MGP_C3HHeJ_T0033723.1 MGP_C3HHeJ_G0019240.1 mouse_genomes_project 11 122903932 122905248 + 1810043H04Rik protein_coding retained_intron MGP_C3HHeJ_T0012469.1 MGP_C3HHeJ_G0010573.1 mouse_genomes_project 11 47074233 47075505 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012444.1 MGP_C3HHeJ_G0010548.1 mouse_genomes_project 11 31147919 31148366 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012546.1 MGP_C3HHeJ_G0010650.1 mouse_genomes_project 11 73848936 73849133 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003249.1 MGP_C3HHeJ_G0003000.1 mouse_genomes_project 11 108102028 108103273 - Taco1os antisense antisense MGP_C3HHeJ_T0097843.1 MGP_C3HHeJ_G0036055.1 mouse_genomes_project 11 58550316 58550794 - pseudogene pseudogene MGP_C3HHeJ_T0003173.1 MGP_C3HHeJ_G0002941.1 mouse_genomes_project 11 81862424 81881103 + 4930527B05Rik antisense antisense MGP_C3HHeJ_T0012437.1 MGP_C3HHeJ_G0010541.1 mouse_genomes_project 11 28592763 28593153 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003190.1 MGP_C3HHeJ_G0002953.1 mouse_genomes_project 11 89762760 89794208 + 4930556N13Rik antisense antisense MGP_C3HHeJ_T0030918.1 MGP_C3HHeJ_G0018571.1 mouse_genomes_project 11 81321520 81331320 + MGP_C3HHeJ_P0030918 Spaca3 protein_coding protein_coding MGP_C3HHeJ_T0030919.1 MGP_C3HHeJ_G0018571.1 mouse_genomes_project 11 81321527 81331324 + MGP_C3HHeJ_P0030919 Spaca3 protein_coding protein_coding MGP_C3HHeJ_T0006096.1 MGP_C3HHeJ_G0005082.1 mouse_genomes_project 11 4353991 4373872 - Gm11986 lincRNA lincRNA MGP_C3HHeJ_T0098825.1 MGP_C3HHeJ_G0037019.1 mouse_genomes_project 11 111261231 111261338 - Gm24149 snRNA snRNA MGP_C3HHeJ_T0030213.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72444806 72455220 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0030214.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72444806 72455220 + MGP_C3HHeJ_P0030214 Mybbp1a protein_coding protein_coding MGP_C3HHeJ_T0030215.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72444808 72454681 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0030216.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72444828 72447025 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0030217.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72447223 72448015 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0030218.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72451668 72454457 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0030219.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72453089 72454158 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0030220.1 MGP_C3HHeJ_G0018393.1 mouse_genomes_project 11 72454025 72454554 + Mybbp1a protein_coding retained_intron MGP_C3HHeJ_T0012418.1 MGP_C3HHeJ_G0010522.1 mouse_genomes_project 11 24348369 24348838 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003093.1 MGP_C3HHeJ_G0002874.1 mouse_genomes_project 11 51233506 51243631 + A630014C17Rik antisense antisense MGP_C3HHeJ_T0030204.1 MGP_C3HHeJ_G0018389.1 mouse_genomes_project 11 72302957 72310209 + MGP_C3HHeJ_P0030204 Fbxo39 protein_coding protein_coding MGP_C3HHeJ_T0100007.1 MGP_C3HHeJ_G0038201.1 mouse_genomes_project 11 44104906 44105038 + Gm22284 snoRNA snoRNA MGP_C3HHeJ_T0032072.1 MGP_C3HHeJ_G0018904.1 mouse_genomes_project 11 102100644 102107078 - MGP_C3HHeJ_P0032072 P3h4 protein_coding protein_coding MGP_C3HHeJ_T0032073.1 MGP_C3HHeJ_G0018904.1 mouse_genomes_project 11 102101554 102104116 - MGP_C3HHeJ_P0032073 P3h4 protein_coding protein_coding MGP_C3HHeJ_T0012513.1 MGP_C3HHeJ_G0010617.1 mouse_genomes_project 11 60297163 60297691 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030359.1 MGP_C3HHeJ_G0018448.1 mouse_genomes_project 11 74732731 74755519 + MGP_C3HHeJ_P0030359 Ccdc92b protein_coding protein_coding MGP_C3HHeJ_T0028186.1 MGP_C3HHeJ_G0017880.1 mouse_genomes_project 11 29906909 29968049 + MGP_C3HHeJ_P0028186 Nsg2 protein_coding protein_coding MGP_C3HHeJ_T0028187.1 MGP_C3HHeJ_G0017880.1 mouse_genomes_project 11 29906909 29924260 + MGP_C3HHeJ_P0028187 Nsg2 protein_coding protein_coding MGP_C3HHeJ_T0028188.1 MGP_C3HHeJ_G0017880.1 mouse_genomes_project 11 29906948 29942359 + MGP_C3HHeJ_P0028188 Nsg2 protein_coding protein_coding MGP_C3HHeJ_T0029878.1 MGP_C3HHeJ_G0018325.1 mouse_genomes_project 11 69847930 69852469 + MGP_C3HHeJ_P0029878 Cldn7 protein_coding protein_coding MGP_C3HHeJ_T0029879.1 MGP_C3HHeJ_G0018325.1 mouse_genomes_project 11 69847975 69850121 + MGP_C3HHeJ_P0029879 Cldn7 protein_coding protein_coding MGP_C3HHeJ_T0029880.1 MGP_C3HHeJ_G0018325.1 mouse_genomes_project 11 69848547 69852544 + MGP_C3HHeJ_P0029880 Cldn7 protein_coding protein_coding MGP_C3HHeJ_T0029881.1 MGP_C3HHeJ_G0018325.1 mouse_genomes_project 11 69849078 69852548 + MGP_C3HHeJ_P0029881 Cldn7 protein_coding protein_coding MGP_C3HHeJ_T0029882.1 MGP_C3HHeJ_G0018325.1 mouse_genomes_project 11 69850069 69852311 + MGP_C3HHeJ_P0029882 Cldn7 protein_coding protein_coding MGP_C3HHeJ_T0098828.1 MGP_C3HHeJ_G0037022.1 mouse_genomes_project 11 120919023 120919118 - Gm24060 snRNA snRNA MGP_C3HHeJ_T0029046.1 MGP_C3HHeJ_G0018133.1 mouse_genomes_project 11 58201509 58218536 - MGP_C3HHeJ_P0029046 Zfp39 protein_coding protein_coding MGP_C3HHeJ_T0030227.1 MGP_C3HHeJ_G0018395.1 mouse_genomes_project 11 72501601 72509126 - Spns3 protein_coding processed_transcript MGP_C3HHeJ_T0030228.1 MGP_C3HHeJ_G0018395.1 mouse_genomes_project 11 72504837 72558434 - MGP_C3HHeJ_P0030228 Spns3 protein_coding protein_coding MGP_C3HHeJ_T0030229.1 MGP_C3HHeJ_G0018395.1 mouse_genomes_project 11 72504842 72558229 - MGP_C3HHeJ_P0030229 Spns3 protein_coding protein_coding MGP_C3HHeJ_T0011708.1 MGP_C3HHeJ_G0009837.1 mouse_genomes_project 11 118836322 118840100 + MGP_C3HHeJ_P0011708 Cdk3-ps polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011709.1 MGP_C3HHeJ_G0009837.1 mouse_genomes_project 11 118836805 118837504 + Cdk3-ps polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011710.1 MGP_C3HHeJ_G0009837.1 mouse_genomes_project 11 118836859 118840609 + Cdk3-ps polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0028079.1 MGP_C3HHeJ_G0017856.1 mouse_genomes_project 11 26641763 26715542 + MGP_C3HHeJ_P0028079 Efemp1 protein_coding protein_coding MGP_C3HHeJ_T0028080.1 MGP_C3HHeJ_G0017856.1 mouse_genomes_project 11 26641803 26710334 + Efemp1 protein_coding processed_transcript MGP_C3HHeJ_T0028081.1 MGP_C3HHeJ_G0017856.1 mouse_genomes_project 11 26704508 26715542 + MGP_C3HHeJ_P0028081 Efemp1 protein_coding protein_coding MGP_C3HHeJ_T0028494.1 MGP_C3HHeJ_G0017968.1 mouse_genomes_project 11 47712920 47730191 - MGP_C3HHeJ_P0028494 protein_coding protein_coding MGP_C3HHeJ_T0012624.1 MGP_C3HHeJ_G0010728.1 mouse_genomes_project 11 105820659 105820988 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098271.1 MGP_C3HHeJ_G0036483.1 mouse_genomes_project 11 119730130 119730323 + Gm26083 scaRNA scaRNA MGP_C3HHeJ_T0098353.1 MGP_C3HHeJ_G0036563.1 mouse_genomes_project 11 110551761 110552823 + Gm11656 sense_intronic sense_intronic MGP_C3HHeJ_T0098354.1 MGP_C3HHeJ_G0036563.1 mouse_genomes_project 11 110551777 110554989 + Gm11656 sense_intronic sense_intronic MGP_C3HHeJ_T0030165.1 MGP_C3HHeJ_G0018379.1 mouse_genomes_project 11 71720040 71730233 + MGP_C3HHeJ_P0030165 Wscd1 protein_coding protein_coding MGP_C3HHeJ_T0030166.1 MGP_C3HHeJ_G0018379.1 mouse_genomes_project 11 71720805 71760827 + MGP_C3HHeJ_P0030166 Wscd1 protein_coding protein_coding MGP_C3HHeJ_T0030167.1 MGP_C3HHeJ_G0018379.1 mouse_genomes_project 11 71721100 71760827 + MGP_C3HHeJ_P0030167 Wscd1 protein_coding protein_coding MGP_C3HHeJ_T0030168.1 MGP_C3HHeJ_G0018379.1 mouse_genomes_project 11 71721496 71731089 + Wscd1 protein_coding retained_intron MGP_C3HHeJ_T0030169.1 MGP_C3HHeJ_G0018379.1 mouse_genomes_project 11 71721496 71760827 + MGP_C3HHeJ_P0030169 Wscd1 protein_coding protein_coding MGP_C3HHeJ_T0030170.1 MGP_C3HHeJ_G0018379.1 mouse_genomes_project 11 71738796 71756465 + Wscd1 protein_coding processed_transcript MGP_C3HHeJ_T0030793.1 MGP_C3HHeJ_G0018540.1 mouse_genomes_project 11 78861428 78868708 + MGP_C3HHeJ_P0030793 Ift20 protein_coding protein_coding MGP_C3HHeJ_T0030794.1 MGP_C3HHeJ_G0018540.1 mouse_genomes_project 11 78861495 78868358 + MGP_C3HHeJ_P0030794 Ift20 protein_coding protein_coding MGP_C3HHeJ_T0030795.1 MGP_C3HHeJ_G0018540.1 mouse_genomes_project 11 78861510 78868464 + MGP_C3HHeJ_P0030795 Ift20 protein_coding protein_coding MGP_C3HHeJ_T0030796.1 MGP_C3HHeJ_G0018540.1 mouse_genomes_project 11 78861512 78868464 + Ift20 protein_coding retained_intron MGP_C3HHeJ_T0030797.1 MGP_C3HHeJ_G0018540.1 mouse_genomes_project 11 78861540 78868464 + Ift20 protein_coding retained_intron MGP_C3HHeJ_T0030068.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70587620 70591223 + MGP_C3HHeJ_P0030068 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0030069.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70587620 70592954 + MGP_C3HHeJ_P0030069 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0030070.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70587622 70592954 + MGP_C3HHeJ_P0030070 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0030071.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70587703 70588836 + MGP_C3HHeJ_P0030071 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0030072.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70588105 70588865 + MGP_C3HHeJ_P0030072 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0030073.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70588213 70592951 + MGP_C3HHeJ_P0030073 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0030074.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70588756 70591262 + Eno3 protein_coding retained_intron MGP_C3HHeJ_T0030075.1 MGP_C3HHeJ_G0018363.1 mouse_genomes_project 11 70591190 70592705 + MGP_C3HHeJ_P0030075 Eno3 protein_coding protein_coding MGP_C3HHeJ_T0032937.1 MGP_C3HHeJ_G0019083.1 mouse_genomes_project 11 111630273 111637442 + MGP_C3HHeJ_P0032937 9930022D16Rik protein_coding protein_coding MGP_C3HHeJ_T0027539.1 MGP_C3HHeJ_G0017732.1 mouse_genomes_project 11 1080891 1111208 + Tbc1d10a protein_coding processed_transcript MGP_C3HHeJ_T0027540.1 MGP_C3HHeJ_G0017732.1 mouse_genomes_project 11 1080891 1111828 + MGP_C3HHeJ_P0027540 Tbc1d10a protein_coding protein_coding MGP_C3HHeJ_T0027541.1 MGP_C3HHeJ_G0017732.1 mouse_genomes_project 11 1080924 1111825 + MGP_C3HHeJ_P0027541 Tbc1d10a protein_coding protein_coding MGP_C3HHeJ_T0027542.1 MGP_C3HHeJ_G0017732.1 mouse_genomes_project 11 1101745 1106313 + Tbc1d10a protein_coding processed_transcript MGP_C3HHeJ_T0027543.1 MGP_C3HHeJ_G0017732.1 mouse_genomes_project 11 1108633 1109923 + Tbc1d10a protein_coding processed_transcript MGP_C3HHeJ_T0027544.1 MGP_C3HHeJ_G0017732.1 mouse_genomes_project 11 1108797 1110179 + Tbc1d10a protein_coding processed_transcript MGP_C3HHeJ_T0006130.1 MGP_C3HHeJ_G0005111.1 mouse_genomes_project 11 27359801 27361673 + Gm12088 lincRNA lincRNA MGP_C3HHeJ_T0031821.1 MGP_C3HHeJ_G0018804.1 mouse_genomes_project 11 99489235 99508016 - MGP_C3HHeJ_P0031821 Stac2 protein_coding protein_coding MGP_C3HHeJ_T0031822.1 MGP_C3HHeJ_G0018804.1 mouse_genomes_project 11 99492705 99496094 - MGP_C3HHeJ_P0031822 Stac2 protein_coding protein_coding MGP_C3HHeJ_T0009593.1 MGP_C3HHeJ_G0007726.1 mouse_genomes_project 11 51063610 51063701 + Mir3061 miRNA miRNA MGP_C3HHeJ_T0030440.1 MGP_C3HHeJ_G0018466.1 mouse_genomes_project 11 75613841 75622697 + Tlcd2 protein_coding processed_transcript MGP_C3HHeJ_T0030441.1 MGP_C3HHeJ_G0018466.1 mouse_genomes_project 11 75621118 75624501 + MGP_C3HHeJ_P0030441 Tlcd2 protein_coding protein_coding MGP_C3HHeJ_T0030442.1 MGP_C3HHeJ_G0018466.1 mouse_genomes_project 11 75621118 75624743 + MGP_C3HHeJ_P0030442 Tlcd2 protein_coding protein_coding MGP_C3HHeJ_T0030443.1 MGP_C3HHeJ_G0018466.1 mouse_genomes_project 11 75621750 75623114 + Tlcd2 protein_coding retained_intron MGP_C3HHeJ_T0098817.1 MGP_C3HHeJ_G0037011.1 mouse_genomes_project 11 103149806 103149987 - Gm25475 snRNA snRNA MGP_C3HHeJ_T0032011.1 MGP_C3HHeJ_G0018867.1 mouse_genomes_project 11 101244631 101246659 - MGP_C3HHeJ_P0032011 Krtap4-6 protein_coding protein_coding MGP_C3HHeJ_T0100025.1 MGP_C3HHeJ_G0038219.1 mouse_genomes_project 11 71161651 71161967 - snoRNA snoRNA MGP_C3HHeJ_T0027551.1 MGP_C3HHeJ_G0017736.1 mouse_genomes_project 11 1248258 1346762 - MGP_C3HHeJ_P0027551 Hormad2 protein_coding protein_coding MGP_C3HHeJ_T0027552.1 MGP_C3HHeJ_G0017736.1 mouse_genomes_project 11 1248258 1347120 - MGP_C3HHeJ_P0027552 Hormad2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027553.1 MGP_C3HHeJ_G0017736.1 mouse_genomes_project 11 1248827 1347099 - MGP_C3HHeJ_P0027553 Hormad2 protein_coding protein_coding MGP_C3HHeJ_T0027554.1 MGP_C3HHeJ_G0017736.1 mouse_genomes_project 11 1330172 1333367 - Hormad2 protein_coding processed_transcript MGP_C3HHeJ_T0027555.1 MGP_C3HHeJ_G0017736.1 mouse_genomes_project 11 1330352 1347122 - MGP_C3HHeJ_P0027555 Hormad2 protein_coding protein_coding MGP_C3HHeJ_T0027556.1 MGP_C3HHeJ_G0017736.1 mouse_genomes_project 11 1333418 1341805 - Hormad2 protein_coding processed_transcript MGP_C3HHeJ_T0032355.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103799946 103815790 - MGP_C3HHeJ_P0032355 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0032356.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103799946 103813578 - MGP_C3HHeJ_P0032356 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0032357.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103799946 103812281 - MGP_C3HHeJ_P0032357 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0032358.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103799946 103815790 - MGP_C3HHeJ_P0032358 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0032359.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103802258 103810472 - MGP_C3HHeJ_P0032359 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0032360.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103803505 103813557 - MGP_C3HHeJ_P0032360 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0032361.1 MGP_C3HHeJ_G0018966.1 mouse_genomes_project 11 103809377 103813530 - MGP_C3HHeJ_P0032361 Dusp3 protein_coding protein_coding MGP_C3HHeJ_T0028663.1 MGP_C3HHeJ_G0018015.1 mouse_genomes_project 11 49911062 49912004 + MGP_C3HHeJ_P0028663 Olfr54 protein_coding protein_coding MGP_C3HHeJ_T0031079.1 MGP_C3HHeJ_G0018624.1 mouse_genomes_project 11 85176709 85183942 - MGP_C3HHeJ_P0031079 Lhx1 protein_coding protein_coding MGP_C3HHeJ_T0031080.1 MGP_C3HHeJ_G0018624.1 mouse_genomes_project 11 85177859 85180738 - MGP_C3HHeJ_P0031080 Lhx1 protein_coding protein_coding MGP_C3HHeJ_T0031081.1 MGP_C3HHeJ_G0018624.1 mouse_genomes_project 11 85178124 85180474 - Lhx1 protein_coding retained_intron MGP_C3HHeJ_T0031082.1 MGP_C3HHeJ_G0018624.1 mouse_genomes_project 11 85180302 85181119 - MGP_C3HHeJ_P0031082 Lhx1 protein_coding protein_coding MGP_C3HHeJ_T0031212.1 MGP_C3HHeJ_G0018653.1 mouse_genomes_project 11 87828338 87848899 - MGP_C3HHeJ_P0031212 Prr11 protein_coding protein_coding MGP_C3HHeJ_T0030657.1 MGP_C3HHeJ_G0018510.1 mouse_genomes_project 11 78171760 78185114 - MGP_C3HHeJ_P0030657 Pipox protein_coding protein_coding MGP_C3HHeJ_T0030658.1 MGP_C3HHeJ_G0018510.1 mouse_genomes_project 11 78172205 78173832 - Pipox protein_coding retained_intron MGP_C3HHeJ_T0030659.1 MGP_C3HHeJ_G0018510.1 mouse_genomes_project 11 78173764 78175690 - Pipox protein_coding processed_transcript MGP_C3HHeJ_T0031288.1 MGP_C3HHeJ_G0018668.1 mouse_genomes_project 11 88665582 88676201 + MGP_C3HHeJ_P0031288 Mks1 protein_coding protein_coding MGP_C3HHeJ_T0031289.1 MGP_C3HHeJ_G0018668.1 mouse_genomes_project 11 88665594 88671706 + Mks1 protein_coding retained_intron MGP_C3HHeJ_T0031290.1 MGP_C3HHeJ_G0018668.1 mouse_genomes_project 11 88666042 88671706 + Mks1 protein_coding retained_intron MGP_C3HHeJ_T0031291.1 MGP_C3HHeJ_G0018668.1 mouse_genomes_project 11 88668944 88669679 + Mks1 protein_coding retained_intron MGP_C3HHeJ_T0031292.1 MGP_C3HHeJ_G0018668.1 mouse_genomes_project 11 88674331 88675659 + Mks1 protein_coding retained_intron MGP_C3HHeJ_T0029223.1 MGP_C3HHeJ_G0018178.1 mouse_genomes_project 11 60253115 60256659 + MGP_C3HHeJ_P0029223 Smcr8 protein_coding protein_coding MGP_C3HHeJ_T0029224.1 MGP_C3HHeJ_G0018178.1 mouse_genomes_project 11 60253116 60264673 + MGP_C3HHeJ_P0029224 Smcr8 protein_coding protein_coding MGP_C3HHeJ_T0006282.1 MGP_C3HHeJ_G0005228.1 mouse_genomes_project 11 116536590 116540489 + 1700025D23Rik lincRNA lincRNA MGP_C3HHeJ_T0032472.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104254416 104258976 - MGP_C3HHeJ_P0032472 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032473.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104254416 104258921 - MGP_C3HHeJ_P0032473 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032474.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104254473 104255925 - MGP_C3HHeJ_P0032474 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032475.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104254576 104258938 - Slc25a39 protein_coding retained_intron MGP_C3HHeJ_T0032476.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104255222 104258940 - MGP_C3HHeJ_P0032476 Slc25a39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032477.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104255449 104258888 - Slc25a39 protein_coding retained_intron MGP_C3HHeJ_T0032478.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104255463 104258248 - MGP_C3HHeJ_P0032478 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032479.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104255493 104258919 - MGP_C3HHeJ_P0032479 Slc25a39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032480.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104255820 104258895 - Slc25a39 protein_coding retained_intron MGP_C3HHeJ_T0032481.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104255915 104258747 - MGP_C3HHeJ_P0032481 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032482.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104256040 104258387 - MGP_C3HHeJ_P0032482 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032483.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104256218 104258815 - MGP_C3HHeJ_P0032483 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032484.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104256285 104259378 - MGP_C3HHeJ_P0032484 Slc25a39 protein_coding protein_coding MGP_C3HHeJ_T0032485.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104256454 104258240 - Slc25a39 protein_coding processed_transcript MGP_C3HHeJ_T0032486.1 MGP_C3HHeJ_G0018985.1 mouse_genomes_project 11 104257170 104258316 - Slc25a39 protein_coding retained_intron MGP_C3HHeJ_T0012521.1 MGP_C3HHeJ_G0010625.1 mouse_genomes_project 11 62331798 62334532 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003292.1 MGP_C3HHeJ_G0003037.1 mouse_genomes_project 11 123366479 123370147 - Gm11789 antisense antisense MGP_C3HHeJ_T0003293.1 MGP_C3HHeJ_G0003037.1 mouse_genomes_project 11 123366505 123371081 - Gm11789 antisense antisense MGP_C3HHeJ_T0003294.1 MGP_C3HHeJ_G0003037.1 mouse_genomes_project 11 123366531 123371377 - Gm11789 antisense antisense MGP_C3HHeJ_T0003295.1 MGP_C3HHeJ_G0003037.1 mouse_genomes_project 11 123367856 123371106 - Gm11789 antisense antisense MGP_C3HHeJ_T0003296.1 MGP_C3HHeJ_G0003037.1 mouse_genomes_project 11 123369801 123371090 - Gm11789 antisense antisense MGP_C3HHeJ_T0016981.1 MGP_C3HHeJ_G0014939.1 mouse_genomes_project 11 66704437 66714905 + Gm12299 processed_transcript processed_transcript MGP_C3HHeJ_T0012447.1 MGP_C3HHeJ_G0010551.1 mouse_genomes_project 11 33375183 33375655 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098819.1 MGP_C3HHeJ_G0037013.1 mouse_genomes_project 11 103414740 103414931 + Gm23849 snRNA snRNA MGP_C3HHeJ_T0032041.1 MGP_C3HHeJ_G0018893.1 mouse_genomes_project 11 101779510 101783681 - MGP_C3HHeJ_P0032041 Krt15 protein_coding protein_coding MGP_C3HHeJ_T0032042.1 MGP_C3HHeJ_G0018893.1 mouse_genomes_project 11 101780787 101782151 - Krt15 protein_coding retained_intron MGP_C3HHeJ_T0032063.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102059918 102063678 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0032064.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102061579 102089953 - MGP_C3HHeJ_P0032064 Jup protein_coding protein_coding MGP_C3HHeJ_T0032065.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102062019 102065087 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0032066.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102063257 102089953 - MGP_C3HHeJ_P0032066 Jup protein_coding protein_coding MGP_C3HHeJ_T0032067.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102063318 102064270 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0032068.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102072075 102075250 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0032069.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102075472 102089967 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0032070.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102075552 102078899 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0032071.1 MGP_C3HHeJ_G0018903.1 mouse_genomes_project 11 102075561 102078928 - Jup protein_coding processed_transcript MGP_C3HHeJ_T0031121.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85667580 85825980 - MGP_C3HHeJ_P0031121 Usp32 protein_coding protein_coding MGP_C3HHeJ_T0031122.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85668785 85715697 - MGP_C3HHeJ_P0031122 Usp32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031123.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85669408 85671772 - MGP_C3HHeJ_P0031123 Usp32 protein_coding protein_coding MGP_C3HHeJ_T0031124.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85713724 85726413 - MGP_C3HHeJ_P0031124 Usp32 protein_coding protein_coding MGP_C3HHeJ_T0031125.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85723008 85729455 - MGP_C3HHeJ_P0031125 Usp32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031126.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85736897 85739828 - Usp32 protein_coding retained_intron MGP_C3HHeJ_T0031127.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85762950 85826103 - Usp32 protein_coding processed_transcript MGP_C3HHeJ_T0031128.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85784170 85825910 - Usp32 protein_coding processed_transcript MGP_C3HHeJ_T0031129.1 MGP_C3HHeJ_G0018632.1 mouse_genomes_project 11 85788250 85825871 - Usp32 protein_coding retained_intron MGP_C3HHeJ_T0012536.1 MGP_C3HHeJ_G0010640.1 mouse_genomes_project 11 70339770 70340308 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028063.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24090387 24212409 - MGP_C3HHeJ_P0028063 protein_coding protein_coding MGP_C3HHeJ_T0028064.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24090469 24219259 - MGP_C3HHeJ_P0028064 protein_coding protein_coding MGP_C3HHeJ_T0028065.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24090510 24175078 - MGP_C3HHeJ_P0028065 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028066.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24158958 24218958 - protein_coding retained_intron MGP_C3HHeJ_T0028067.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24159374 24174345 - protein_coding processed_transcript MGP_C3HHeJ_T0028068.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24170377 24219262 - protein_coding retained_intron MGP_C3HHeJ_T0028069.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24172829 24219338 - MGP_C3HHeJ_P0028069 protein_coding protein_coding MGP_C3HHeJ_T0028070.1 MGP_C3HHeJ_G0017853.1 mouse_genomes_project 11 24203961 24218939 - protein_coding processed_transcript MGP_C3HHeJ_T0016933.1 MGP_C3HHeJ_G0014912.1 mouse_genomes_project 11 3764395 3771651 - processed_transcript processed_transcript MGP_C3HHeJ_T0003277.1 MGP_C3HHeJ_G0003023.1 mouse_genomes_project 11 119096921 119112173 + antisense antisense MGP_C3HHeJ_T0003150.1 MGP_C3HHeJ_G0002921.1 mouse_genomes_project 11 69115709 69117036 + Cntrobos antisense antisense MGP_C3HHeJ_T0017003.1 MGP_C3HHeJ_G0014951.1 mouse_genomes_project 11 84186712 84233976 + E230016K23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017004.1 MGP_C3HHeJ_G0014951.1 mouse_genomes_project 11 84186740 84208380 + E230016K23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017005.1 MGP_C3HHeJ_G0014951.1 mouse_genomes_project 11 84231085 84233186 + E230016K23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012383.1 MGP_C3HHeJ_G0010487.1 mouse_genomes_project 11 14339915 14344144 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029600.1 MGP_C3HHeJ_G0018261.1 mouse_genomes_project 11 68719916 68727798 - MGP_C3HHeJ_P0029600 Odf4 protein_coding protein_coding MGP_C3HHeJ_T0029601.1 MGP_C3HHeJ_G0018261.1 mouse_genomes_project 11 68719917 68727830 - MGP_C3HHeJ_P0029601 Odf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029602.1 MGP_C3HHeJ_G0018261.1 mouse_genomes_project 11 68720044 68727565 - MGP_C3HHeJ_P0029602 Odf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029603.1 MGP_C3HHeJ_G0018261.1 mouse_genomes_project 11 68721891 68727823 - MGP_C3HHeJ_P0029603 Odf4 protein_coding protein_coding MGP_C3HHeJ_T0012559.1 MGP_C3HHeJ_G0010663.1 mouse_genomes_project 11 78032802 78034523 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033238.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118361470 118393943 + MGP_C3HHeJ_P0033238 Tmem94 protein_coding protein_coding MGP_C3HHeJ_T0033239.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118361479 118380533 + MGP_C3HHeJ_P0033239 Tmem94 protein_coding protein_coding MGP_C3HHeJ_T0033240.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118361480 118380857 + MGP_C3HHeJ_P0033240 Tmem94 protein_coding protein_coding MGP_C3HHeJ_T0033241.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118361491 118380776 + MGP_C3HHeJ_P0033241 Tmem94 protein_coding protein_coding MGP_C3HHeJ_T0033242.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118362745 118372199 + Tmem94 protein_coding processed_transcript MGP_C3HHeJ_T0033243.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118370590 118393610 + MGP_C3HHeJ_P0033243 Tmem94 protein_coding protein_coding MGP_C3HHeJ_T0033244.1 MGP_C3HHeJ_G0019148.1 mouse_genomes_project 11 118383566 118386561 + MGP_C3HHeJ_P0033244 Tmem94 protein_coding protein_coding MGP_C3HHeJ_T0028832.1 MGP_C3HHeJ_G0018057.1 mouse_genomes_project 11 52840369 52853269 - Gm12216 protein_coding processed_transcript MGP_C3HHeJ_T0028833.1 MGP_C3HHeJ_G0018057.1 mouse_genomes_project 11 52841242 52930830 - Gm12216 protein_coding processed_transcript MGP_C3HHeJ_T0028834.1 MGP_C3HHeJ_G0018057.1 mouse_genomes_project 11 52843123 52930942 - MGP_C3HHeJ_P0028834 Gm12216 protein_coding protein_coding MGP_C3HHeJ_T0028835.1 MGP_C3HHeJ_G0018057.1 mouse_genomes_project 11 52860974 52930915 - Gm12216 protein_coding processed_transcript MGP_C3HHeJ_T0028836.1 MGP_C3HHeJ_G0018057.1 mouse_genomes_project 11 52873966 52930942 - MGP_C3HHeJ_P0028836 Gm12216 protein_coding protein_coding MGP_C3HHeJ_T0028837.1 MGP_C3HHeJ_G0018057.1 mouse_genomes_project 11 52877668 52930942 - MGP_C3HHeJ_P0028837 Gm12216 protein_coding protein_coding MGP_C3HHeJ_T0030503.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76234548 76383509 - MGP_C3HHeJ_P0030503 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0030504.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76234618 76383486 - MGP_C3HHeJ_P0030504 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0030505.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76234619 76383479 - MGP_C3HHeJ_P0030505 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0030506.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76250075 76282670 - Vps53 protein_coding retained_intron MGP_C3HHeJ_T0030507.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76251014 76383361 - MGP_C3HHeJ_P0030507 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0030508.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76251019 76383361 - MGP_C3HHeJ_P0030508 Vps53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030509.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76251019 76383378 - MGP_C3HHeJ_P0030509 Vps53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030510.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76307713 76383394 - MGP_C3HHeJ_P0030510 Vps53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030511.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76308328 76370099 - MGP_C3HHeJ_P0030511 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0030513.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76312097 76383449 - Vps53 protein_coding retained_intron MGP_C3HHeJ_T0030514.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76312213 76379643 - Vps53 protein_coding processed_transcript MGP_C3HHeJ_T0030515.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76312218 76328688 - Vps53 protein_coding processed_transcript MGP_C3HHeJ_T0030516.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76324360 76358517 - Vps53 protein_coding processed_transcript MGP_C3HHeJ_T0030517.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76326136 76383496 - MGP_C3HHeJ_P0030517 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0030518.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76374408 76383474 - Vps53 protein_coding processed_transcript MGP_C3HHeJ_T0030519.1 MGP_C3HHeJ_G0018480.1 mouse_genomes_project 11 76380813 76383500 - MGP_C3HHeJ_P0030519 Vps53 protein_coding protein_coding MGP_C3HHeJ_T0031702.1 MGP_C3HHeJ_G0018778.1 mouse_genomes_project 11 98427060 98446162 + MGP_C3HHeJ_P0031702 Osbpl7 protein_coding protein_coding MGP_C3HHeJ_T0031703.1 MGP_C3HHeJ_G0018778.1 mouse_genomes_project 11 98427252 98429258 + Osbpl7 protein_coding processed_transcript MGP_C3HHeJ_T0031704.1 MGP_C3HHeJ_G0018778.1 mouse_genomes_project 11 98427252 98446162 + MGP_C3HHeJ_P0031704 Osbpl7 protein_coding protein_coding MGP_C3HHeJ_T0031705.1 MGP_C3HHeJ_G0018778.1 mouse_genomes_project 11 98428760 98429410 + Osbpl7 protein_coding retained_intron MGP_C3HHeJ_T0031706.1 MGP_C3HHeJ_G0018778.1 mouse_genomes_project 11 98429645 98433582 + Osbpl7 protein_coding retained_intron MGP_C3HHeJ_T0031707.1 MGP_C3HHeJ_G0018778.1 mouse_genomes_project 11 98444140 98445529 + Osbpl7 protein_coding retained_intron MGP_C3HHeJ_T0031858.1 MGP_C3HHeJ_G0018813.1 mouse_genomes_project 11 99863935 99867341 - Pgap3 protein_coding processed_transcript MGP_C3HHeJ_T0031859.1 MGP_C3HHeJ_G0018813.1 mouse_genomes_project 11 99863935 99877154 - MGP_C3HHeJ_P0031859 Pgap3 protein_coding protein_coding MGP_C3HHeJ_T0031860.1 MGP_C3HHeJ_G0018813.1 mouse_genomes_project 11 99864880 99877099 - MGP_C3HHeJ_P0031860 Pgap3 protein_coding protein_coding MGP_C3HHeJ_T0031861.1 MGP_C3HHeJ_G0018813.1 mouse_genomes_project 11 99866590 99877078 - Pgap3 protein_coding processed_transcript MGP_C3HHeJ_T0031862.1 MGP_C3HHeJ_G0018813.1 mouse_genomes_project 11 99875198 99877101 - Pgap3 protein_coding processed_transcript MGP_C3HHeJ_T0032720.1 MGP_C3HHeJ_G0019036.1 mouse_genomes_project 11 107391298 107480105 - MGP_C3HHeJ_P0032720 March10 protein_coding protein_coding MGP_C3HHeJ_T0032721.1 MGP_C3HHeJ_G0019036.1 mouse_genomes_project 11 107394244 107402010 - March10 protein_coding processed_transcript MGP_C3HHeJ_T0032722.1 MGP_C3HHeJ_G0019036.1 mouse_genomes_project 11 107428590 107440934 - MGP_C3HHeJ_P0032722 March10 protein_coding protein_coding MGP_C3HHeJ_T0032723.1 MGP_C3HHeJ_G0019036.1 mouse_genomes_project 11 107433551 107482445 - MGP_C3HHeJ_P0032723 March10 protein_coding protein_coding MGP_C3HHeJ_T0101634.1 MGP_C3HHeJ_G0039600.1 mouse_genomes_project 11 57300279 57309158 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0027564.1 MGP_C3HHeJ_G0017738.1 mouse_genomes_project 11 1527889 1529532 + MGP_C3HHeJ_P0027564 Gm11032 protein_coding protein_coding MGP_C3HHeJ_T0033813.1 MGP_C3HHeJ_G0019261.1 mouse_genomes_project 11 123432663 123438908 - MGP_C3HHeJ_P0033813 Alyref protein_coding protein_coding MGP_C3HHeJ_T0033814.1 MGP_C3HHeJ_G0019261.1 mouse_genomes_project 11 123435051 123436200 - Alyref protein_coding processed_transcript MGP_C3HHeJ_T0033815.1 MGP_C3HHeJ_G0019261.1 mouse_genomes_project 11 123436158 123438774 - Alyref protein_coding retained_intron MGP_C3HHeJ_T0003133.1 MGP_C3HHeJ_G0002908.1 mouse_genomes_project 11 62513156 62515594 - Tvp23bos antisense antisense MGP_C3HHeJ_T0031639.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810753 98121895 + MGP_C3HHeJ_P0031639 Skap1 protein_coding protein_coding MGP_C3HHeJ_T0031640.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810753 98121706 + MGP_C3HHeJ_P0031640 Skap1 protein_coding protein_coding MGP_C3HHeJ_T0031641.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810760 97840435 + MGP_C3HHeJ_P0031641 Skap1 protein_coding protein_coding MGP_C3HHeJ_T0031642.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810784 98091801 + Skap1 protein_coding retained_intron MGP_C3HHeJ_T0031643.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810787 98121706 + MGP_C3HHeJ_P0031643 Skap1 protein_coding protein_coding MGP_C3HHeJ_T0031644.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810793 97929892 + MGP_C3HHeJ_P0031644 Skap1 protein_coding protein_coding MGP_C3HHeJ_T0031645.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97810841 98029380 + MGP_C3HHeJ_P0031645 Skap1 protein_coding protein_coding MGP_C3HHeJ_T0031646.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97830626 97840435 + Skap1 protein_coding processed_transcript MGP_C3HHeJ_T0031647.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 97836676 98055806 + Skap1 protein_coding retained_intron MGP_C3HHeJ_T0031648.1 MGP_C3HHeJ_G0018765.1 mouse_genomes_project 11 98059609 98066138 + Skap1 protein_coding retained_intron MGP_C3HHeJ_T0028839.1 MGP_C3HHeJ_G0018059.1 mouse_genomes_project 11 52949542 53056689 - MGP_C3HHeJ_P0028839 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027488.1 MGP_C3HHeJ_G0017720.1 mouse_genomes_project 11 795982 803626 - MGP_C3HHeJ_P0027488 Slc35e4 protein_coding protein_coding MGP_C3HHeJ_T0027489.1 MGP_C3HHeJ_G0017720.1 mouse_genomes_project 11 795983 803626 - MGP_C3HHeJ_P0027489 Slc35e4 protein_coding protein_coding MGP_C3HHeJ_T0032208.1 MGP_C3HHeJ_G0018935.1 mouse_genomes_project 11 102890546 102898845 - MGP_C3HHeJ_P0032208 Plekhh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032209.1 MGP_C3HHeJ_G0018935.1 mouse_genomes_project 11 102890546 102899241 - MGP_C3HHeJ_P0032209 Plekhh3 protein_coding protein_coding MGP_C3HHeJ_T0032210.1 MGP_C3HHeJ_G0018935.1 mouse_genomes_project 11 102890546 102893488 - MGP_C3HHeJ_P0032210 Plekhh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032211.1 MGP_C3HHeJ_G0018935.1 mouse_genomes_project 11 102890549 102899207 - MGP_C3HHeJ_P0032211 Plekhh3 protein_coding protein_coding MGP_C3HHeJ_T0032212.1 MGP_C3HHeJ_G0018935.1 mouse_genomes_project 11 102892034 102893192 - Plekhh3 protein_coding processed_transcript MGP_C3HHeJ_T0032213.1 MGP_C3HHeJ_G0018935.1 mouse_genomes_project 11 102895361 102898244 - MGP_C3HHeJ_P0032213 Plekhh3 protein_coding protein_coding MGP_C3HHeJ_T0012458.1 MGP_C3HHeJ_G0010562.1 mouse_genomes_project 11 39876032 39876945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033395.1 MGP_C3HHeJ_G0019176.1 mouse_genomes_project 11 119058045 119065701 + MGP_C3HHeJ_P0033395 protein_coding protein_coding MGP_C3HHeJ_T0028151.1 MGP_C3HHeJ_G0017869.1 mouse_genomes_project 11 28234987 28283869 - MGP_C3HHeJ_P0028151 4930505A04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028152.1 MGP_C3HHeJ_G0017869.1 mouse_genomes_project 11 28234987 28283850 - MGP_C3HHeJ_P0028152 4930505A04Rik protein_coding protein_coding MGP_C3HHeJ_T0006289.1 MGP_C3HHeJ_G0005234.1 mouse_genomes_project 11 118931384 118934031 + Gm26730 lincRNA lincRNA MGP_C3HHeJ_T0033933.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123815148 123825373 + MGP_C3HHeJ_P0033933 Slc16a3 protein_coding protein_coding MGP_C3HHeJ_T0033934.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123815721 123823345 + MGP_C3HHeJ_P0033934 Slc16a3 protein_coding protein_coding MGP_C3HHeJ_T0033935.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123815735 123825598 + MGP_C3HHeJ_P0033935 Slc16a3 protein_coding protein_coding MGP_C3HHeJ_T0033936.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123815739 123823459 + MGP_C3HHeJ_P0033936 Slc16a3 protein_coding protein_coding MGP_C3HHeJ_T0033937.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123815749 123827466 + MGP_C3HHeJ_P0033937 Slc16a3 protein_coding protein_coding MGP_C3HHeJ_T0033938.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123817356 123821871 + MGP_C3HHeJ_P0033938 Slc16a3 protein_coding protein_coding MGP_C3HHeJ_T0033939.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123817806 123820810 + Slc16a3 protein_coding processed_transcript MGP_C3HHeJ_T0033940.1 MGP_C3HHeJ_G0019281.1 mouse_genomes_project 11 123821823 123822829 + Slc16a3 protein_coding retained_intron MGP_C3HHeJ_T0027739.1 MGP_C3HHeJ_G0017777.1 mouse_genomes_project 11 3434337 3452811 - MGP_C3HHeJ_P0027739 H2afv protein_coding protein_coding MGP_C3HHeJ_T0027740.1 MGP_C3HHeJ_G0017777.1 mouse_genomes_project 11 3435246 3452720 - MGP_C3HHeJ_P0027740 H2afv protein_coding protein_coding MGP_C3HHeJ_T0101668.1 MGP_C3HHeJ_G0039634.1 mouse_genomes_project 11 124759831 124764286 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029883.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69852880 69864679 - MGP_C3HHeJ_P0029883 Elp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029884.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69852882 69865659 - MGP_C3HHeJ_P0029884 Elp5 protein_coding protein_coding MGP_C3HHeJ_T0029885.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69852886 69864670 - Elp5 protein_coding retained_intron MGP_C3HHeJ_T0029886.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69852890 69854062 - Elp5 protein_coding retained_intron MGP_C3HHeJ_T0029887.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69853899 69864468 - MGP_C3HHeJ_P0029887 Elp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029888.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69854173 69864668 - Elp5 protein_coding retained_intron MGP_C3HHeJ_T0029889.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69855370 69864618 - Elp5 protein_coding retained_intron MGP_C3HHeJ_T0029890.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69855388 69866046 - MGP_C3HHeJ_P0029890 Elp5 protein_coding protein_coding MGP_C3HHeJ_T0029891.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69859509 69866924 - MGP_C3HHeJ_P0029891 Elp5 protein_coding protein_coding MGP_C3HHeJ_T0029892.1 MGP_C3HHeJ_G0018326.1 mouse_genomes_project 11 69864441 69865103 - MGP_C3HHeJ_P0029892 Elp5 protein_coding protein_coding MGP_C3HHeJ_T0003199.1 MGP_C3HHeJ_G0002959.1 mouse_genomes_project 11 96614489 96616833 - antisense antisense MGP_C3HHeJ_T0003163.1 MGP_C3HHeJ_G0002932.1 mouse_genomes_project 11 78585664 78585993 - Gm11192 antisense antisense MGP_C3HHeJ_T0011223.1 MGP_C3HHeJ_G0009356.1 mouse_genomes_project 11 119468817 119468990 - Gm27401 misc_RNA misc_RNA MGP_C3HHeJ_T0028722.1 MGP_C3HHeJ_G0018029.1 mouse_genomes_project 11 50897215 50906741 + MGP_C3HHeJ_P0028722 Cdkn2aipnl protein_coding protein_coding MGP_C3HHeJ_T0028723.1 MGP_C3HHeJ_G0018029.1 mouse_genomes_project 11 50897446 50905651 + MGP_C3HHeJ_P0028723 Cdkn2aipnl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029258.1 MGP_C3HHeJ_G0018186.1 mouse_genomes_project 11 60660287 60683558 - MGP_C3HHeJ_P0029258 Usp22 protein_coding protein_coding MGP_C3HHeJ_T0029259.1 MGP_C3HHeJ_G0018186.1 mouse_genomes_project 11 60662521 60665895 - Usp22 protein_coding retained_intron MGP_C3HHeJ_T0029260.1 MGP_C3HHeJ_G0018186.1 mouse_genomes_project 11 60664212 60667887 - Usp22 protein_coding retained_intron MGP_C3HHeJ_T0029261.1 MGP_C3HHeJ_G0018186.1 mouse_genomes_project 11 60669897 60676778 - MGP_C3HHeJ_P0029261 Usp22 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029262.1 MGP_C3HHeJ_G0018186.1 mouse_genomes_project 11 60671274 60683532 - Usp22 protein_coding retained_intron MGP_C3HHeJ_T0032185.1 MGP_C3HHeJ_G0018929.1 mouse_genomes_project 11 102806761 102810852 + MGP_C3HHeJ_P0032185 Coasy protein_coding protein_coding MGP_C3HHeJ_T0032186.1 MGP_C3HHeJ_G0018929.1 mouse_genomes_project 11 102806814 102809853 + Coasy protein_coding processed_transcript MGP_C3HHeJ_T0032187.1 MGP_C3HHeJ_G0018929.1 mouse_genomes_project 11 102806821 102810852 + MGP_C3HHeJ_P0032187 Coasy protein_coding protein_coding MGP_C3HHeJ_T0032188.1 MGP_C3HHeJ_G0018929.1 mouse_genomes_project 11 102808091 102809376 + Coasy protein_coding processed_transcript MGP_C3HHeJ_T0003231.1 MGP_C3HHeJ_G0002983.1 mouse_genomes_project 11 103221462 103222277 - Gm11626 antisense antisense MGP_C3HHeJ_T0032022.1 MGP_C3HHeJ_G0018878.1 mouse_genomes_project 11 101505013 101506061 + MGP_C3HHeJ_P0032022 Gm11567 protein_coding protein_coding MGP_C3HHeJ_T0097999.1 MGP_C3HHeJ_G0036211.1 mouse_genomes_project 11 87138989 87139109 + Gm23667 rRNA rRNA MGP_C3HHeJ_T0028154.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28611123 28730792 + MGP_C3HHeJ_P0028154 Psme4 protein_coding protein_coding MGP_C3HHeJ_T0028155.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28611718 28646528 + MGP_C3HHeJ_P0028155 Psme4 protein_coding protein_coding MGP_C3HHeJ_T0028156.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28653662 28655855 + Psme4 protein_coding processed_transcript MGP_C3HHeJ_T0028157.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28672227 28676274 + Psme4 protein_coding processed_transcript MGP_C3HHeJ_T0028158.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28674508 28675177 + Psme4 protein_coding processed_transcript MGP_C3HHeJ_T0028159.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28695548 28699913 + MGP_C3HHeJ_P0028159 Psme4 protein_coding protein_coding MGP_C3HHeJ_T0028160.1 MGP_C3HHeJ_G0017871.1 mouse_genomes_project 11 28712836 28724635 + Psme4 protein_coding processed_transcript MGP_C3HHeJ_T0006266.1 MGP_C3HHeJ_G0005216.1 mouse_genomes_project 11 109044233 109045259 - Gm11707 lincRNA lincRNA MGP_C3HHeJ_T0006169.1 MGP_C3HHeJ_G0005146.1 mouse_genomes_project 11 59275286 59284776 + Gm12714 lincRNA lincRNA MGP_C3HHeJ_T0028044.1 MGP_C3HHeJ_G0017850.1 mouse_genomes_project 11 21643764 21740994 + MGP_C3HHeJ_P0028044 Bcl11a protein_coding protein_coding MGP_C3HHeJ_T0028045.1 MGP_C3HHeJ_G0017850.1 mouse_genomes_project 11 21643825 21741923 + MGP_C3HHeJ_P0028045 Bcl11a protein_coding protein_coding MGP_C3HHeJ_T0028046.1 MGP_C3HHeJ_G0017850.1 mouse_genomes_project 11 21643855 21657249 + Bcl11a protein_coding retained_intron MGP_C3HHeJ_T0028047.1 MGP_C3HHeJ_G0017850.1 mouse_genomes_project 11 21643881 21736253 + MGP_C3HHeJ_P0028047 Bcl11a protein_coding protein_coding MGP_C3HHeJ_T0028048.1 MGP_C3HHeJ_G0017850.1 mouse_genomes_project 11 21646378 21741358 + MGP_C3HHeJ_P0028048 Bcl11a protein_coding protein_coding MGP_C3HHeJ_T0028049.1 MGP_C3HHeJ_G0017850.1 mouse_genomes_project 11 21710210 21731115 + Bcl11a protein_coding processed_transcript MGP_C3HHeJ_T0031811.1 MGP_C3HHeJ_G0018801.1 mouse_genomes_project 11 99436080 99443003 - MGP_C3HHeJ_P0031811 Arl5c protein_coding protein_coding MGP_C3HHeJ_T0006265.1 MGP_C3HHeJ_G0005215.1 mouse_genomes_project 11 104862908 104869826 - 2410004I01Rik lincRNA lincRNA MGP_C3HHeJ_T0028375.1 MGP_C3HHeJ_G0017930.1 mouse_genomes_project 11 41980135 41985596 - MGP_C3HHeJ_P0028375 Fabp6 protein_coding protein_coding MGP_C3HHeJ_T0006159.1 MGP_C3HHeJ_G0005137.1 mouse_genomes_project 11 49027622 49081094 + Gm26542 lincRNA lincRNA MGP_C3HHeJ_T0028134.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27522926 27813463 - MGP_C3HHeJ_P0028134 Eml6 protein_coding protein_coding MGP_C3HHeJ_T0028135.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27524016 27545492 - Eml6 protein_coding retained_intron MGP_C3HHeJ_T0028136.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27524465 27606557 - MGP_C3HHeJ_P0028136 Eml6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028137.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27526519 27532828 - Eml6 protein_coding retained_intron MGP_C3HHeJ_T0028138.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27527331 27530884 - Eml6 protein_coding retained_intron MGP_C3HHeJ_T0028139.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27531321 27541522 - MGP_C3HHeJ_P0028139 Eml6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028140.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27584072 27585177 - Eml6 protein_coding retained_intron MGP_C3HHeJ_T0028141.1 MGP_C3HHeJ_G0017866.1 mouse_genomes_project 11 27591531 27602768 - MGP_C3HHeJ_P0028141 Eml6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029546.1 MGP_C3HHeJ_G0018249.1 mouse_genomes_project 11 67606301 67670820 - MGP_C3HHeJ_P0029546 Usp43 protein_coding protein_coding MGP_C3HHeJ_T0029547.1 MGP_C3HHeJ_G0018249.1 mouse_genomes_project 11 67606301 67670820 - MGP_C3HHeJ_P0029547 Usp43 protein_coding protein_coding MGP_C3HHeJ_T0029548.1 MGP_C3HHeJ_G0018249.1 mouse_genomes_project 11 67607135 67623530 - Usp43 protein_coding retained_intron MGP_C3HHeJ_T0029549.1 MGP_C3HHeJ_G0018249.1 mouse_genomes_project 11 67644908 67669876 - Usp43 protein_coding processed_transcript MGP_C3HHeJ_T0031997.1 MGP_C3HHeJ_G0018853.1 mouse_genomes_project 11 101114298 101118507 - MGP_C3HHeJ_P0031997 protein_coding protein_coding MGP_C3HHeJ_T0033321.1 MGP_C3HHeJ_G0019162.1 mouse_genomes_project 11 118691278 118700539 - MGP_C3HHeJ_P0033321 Wbp2 protein_coding protein_coding MGP_C3HHeJ_T0033322.1 MGP_C3HHeJ_G0019162.1 mouse_genomes_project 11 118691957 118700539 - MGP_C3HHeJ_P0033322 Wbp2 protein_coding protein_coding MGP_C3HHeJ_T0033323.1 MGP_C3HHeJ_G0019162.1 mouse_genomes_project 11 118692102 118694208 - Wbp2 protein_coding processed_transcript MGP_C3HHeJ_T0033324.1 MGP_C3HHeJ_G0019162.1 mouse_genomes_project 11 118694551 118700539 - Wbp2 protein_coding processed_transcript MGP_C3HHeJ_T0033325.1 MGP_C3HHeJ_G0019162.1 mouse_genomes_project 11 118696620 118700516 - Wbp2 protein_coding processed_transcript MGP_C3HHeJ_T0006264.1 MGP_C3HHeJ_G0005214.1 mouse_genomes_project 11 104756409 104986509 + Gm26668 lincRNA lincRNA MGP_C3HHeJ_T0012415.1 MGP_C3HHeJ_G0010519.1 mouse_genomes_project 11 21490721 21490980 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030233.1 MGP_C3HHeJ_G0018397.1 mouse_genomes_project 11 72702534 72737431 + Ankfy1 protein_coding retained_intron MGP_C3HHeJ_T0030234.1 MGP_C3HHeJ_G0018397.1 mouse_genomes_project 11 72702534 72785833 + MGP_C3HHeJ_P0030234 Ankfy1 protein_coding protein_coding MGP_C3HHeJ_T0030235.1 MGP_C3HHeJ_G0018397.1 mouse_genomes_project 11 72702534 72784612 + MGP_C3HHeJ_P0030235 Ankfy1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030236.1 MGP_C3HHeJ_G0018397.1 mouse_genomes_project 11 72724605 72780979 + Ankfy1 protein_coding processed_transcript MGP_C3HHeJ_T0030237.1 MGP_C3HHeJ_G0018397.1 mouse_genomes_project 11 72774404 72775379 + Ankfy1 protein_coding retained_intron MGP_C3HHeJ_T0030238.1 MGP_C3HHeJ_G0018397.1 mouse_genomes_project 11 72778998 72781144 + Ankfy1 protein_coding retained_intron MGP_C3HHeJ_T0031512.1 MGP_C3HHeJ_G0018725.1 mouse_genomes_project 11 96203247 96220136 + MGP_C3HHeJ_P0031512 Col1a1 protein_coding protein_coding MGP_C3HHeJ_T0031513.1 MGP_C3HHeJ_G0018725.1 mouse_genomes_project 11 96204704 96205118 + Col1a1 protein_coding processed_transcript MGP_C3HHeJ_T0031514.1 MGP_C3HHeJ_G0018725.1 mouse_genomes_project 11 96206026 96206756 + Col1a1 protein_coding retained_intron MGP_C3HHeJ_T0031515.1 MGP_C3HHeJ_G0018725.1 mouse_genomes_project 11 96212451 96213113 + Col1a1 protein_coding retained_intron MGP_C3HHeJ_T0017062.1 MGP_C3HHeJ_G0014980.1 mouse_genomes_project 11 120104480 120117155 + Gm11732 processed_transcript processed_transcript MGP_C3HHeJ_T0031155.1 MGP_C3HHeJ_G0018640.1 mouse_genomes_project 11 86780134 86924688 - MGP_C3HHeJ_P0031155 Brip1 protein_coding protein_coding MGP_C3HHeJ_T0031156.1 MGP_C3HHeJ_G0018640.1 mouse_genomes_project 11 86918530 86924659 - Brip1 protein_coding processed_transcript MGP_C3HHeJ_T0031157.1 MGP_C3HHeJ_G0018640.1 mouse_genomes_project 11 86919196 86924661 - Brip1 protein_coding processed_transcript MGP_C3HHeJ_T0003044.1 MGP_C3HHeJ_G0002834.1 mouse_genomes_project 11 1528097 1536602 - Gm11961 antisense antisense MGP_C3HHeJ_T0003045.1 MGP_C3HHeJ_G0002834.1 mouse_genomes_project 11 1534211 1538847 - Gm11961 antisense antisense MGP_C3HHeJ_T0031056.1 MGP_C3HHeJ_G0018619.1 mouse_genomes_project 11 84673536 84695208 - MGP_C3HHeJ_P0031056 Dusp14 protein_coding protein_coding MGP_C3HHeJ_T0031057.1 MGP_C3HHeJ_G0018619.1 mouse_genomes_project 11 84673536 84694764 - MGP_C3HHeJ_P0031057 Dusp14 protein_coding protein_coding MGP_C3HHeJ_T0031058.1 MGP_C3HHeJ_G0018619.1 mouse_genomes_project 11 84673540 84694986 - MGP_C3HHeJ_P0031058 Dusp14 protein_coding protein_coding MGP_C3HHeJ_T0031059.1 MGP_C3HHeJ_G0018619.1 mouse_genomes_project 11 84673909 84693487 - MGP_C3HHeJ_P0031059 Dusp14 protein_coding protein_coding MGP_C3HHeJ_T0031060.1 MGP_C3HHeJ_G0018619.1 mouse_genomes_project 11 84674475 84695668 - MGP_C3HHeJ_P0031060 Dusp14 protein_coding protein_coding MGP_C3HHeJ_T0032010.1 MGP_C3HHeJ_G0018866.1 mouse_genomes_project 11 101236719 101237731 - MGP_C3HHeJ_P0032010 Gm11563 protein_coding protein_coding MGP_C3HHeJ_T0003175.1 MGP_C3HHeJ_G0002943.1 mouse_genomes_project 11 83286576 83288018 - Gm11423 antisense antisense MGP_C3HHeJ_T0003176.1 MGP_C3HHeJ_G0002943.1 mouse_genomes_project 11 83286806 83288018 - Gm11423 antisense antisense MGP_C3HHeJ_T0027970.1 MGP_C3HHeJ_G0017833.1 mouse_genomes_project 11 20262249 20368354 - MGP_C3HHeJ_P0027970 Gm12057 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033889.1 MGP_C3HHeJ_G0019272.1 mouse_genomes_project 11 123565301 123572500 + MGP_C3HHeJ_P0033889 Lrrc45 protein_coding protein_coding MGP_C3HHeJ_T0033890.1 MGP_C3HHeJ_G0019272.1 mouse_genomes_project 11 123565327 123572495 + MGP_C3HHeJ_P0033890 Lrrc45 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033891.1 MGP_C3HHeJ_G0019272.1 mouse_genomes_project 11 123565354 123566931 + MGP_C3HHeJ_P0033891 Lrrc45 protein_coding protein_coding MGP_C3HHeJ_T0033892.1 MGP_C3HHeJ_G0019272.1 mouse_genomes_project 11 123568891 123571349 + Lrrc45 protein_coding retained_intron MGP_C3HHeJ_T0033893.1 MGP_C3HHeJ_G0019272.1 mouse_genomes_project 11 123571107 123572284 + Lrrc45 protein_coding retained_intron MGP_C3HHeJ_T0016934.1 MGP_C3HHeJ_G0014913.1 mouse_genomes_project 11 8879556 8926615 - Gm11999 processed_transcript processed_transcript MGP_C3HHeJ_T0098356.1 MGP_C3HHeJ_G0036565.1 mouse_genomes_project 11 121953611 121954175 - Gm11753 sense_intronic sense_intronic MGP_C3HHeJ_T0032132.1 MGP_C3HHeJ_G0018916.1 mouse_genomes_project 11 102399793 102407221 - Kat2a protein_coding processed_transcript MGP_C3HHeJ_T0032133.1 MGP_C3HHeJ_G0018916.1 mouse_genomes_project 11 102399793 102407497 - Kat2a protein_coding processed_transcript MGP_C3HHeJ_T0032134.1 MGP_C3HHeJ_G0018916.1 mouse_genomes_project 11 102399793 102407513 - MGP_C3HHeJ_P0032134 Kat2a protein_coding protein_coding MGP_C3HHeJ_T0032135.1 MGP_C3HHeJ_G0018916.1 mouse_genomes_project 11 102399793 102407513 - MGP_C3HHeJ_P0032135 Kat2a protein_coding protein_coding MGP_C3HHeJ_T0028265.1 MGP_C3HHeJ_G0017901.1 mouse_genomes_project 11 31594307 31623024 + MGP_C3HHeJ_P0028265 D130052B06Rik protein_coding protein_coding MGP_C3HHeJ_T0003122.1 MGP_C3HHeJ_G0002898.1 mouse_genomes_project 11 61022886 61023560 - B9d1os antisense antisense MGP_C3HHeJ_T0033577.1 MGP_C3HHeJ_G0019213.1 mouse_genomes_project 11 121045651 121101300 - MGP_C3HHeJ_P0033577 Timp2 protein_coding protein_coding MGP_C3HHeJ_T0098344.1 MGP_C3HHeJ_G0036555.1 mouse_genomes_project 11 33401893 33402610 + Gm12122 sense_intronic sense_intronic MGP_C3HHeJ_T0028388.1 MGP_C3HHeJ_G0017934.1 mouse_genomes_project 11 42824879 42838796 + MGP_C3HHeJ_P0028388 Il12b protein_coding protein_coding MGP_C3HHeJ_T0028389.1 MGP_C3HHeJ_G0017934.1 mouse_genomes_project 11 42824879 42838820 + MGP_C3HHeJ_P0028389 Il12b protein_coding protein_coding MGP_C3HHeJ_T0028778.1 MGP_C3HHeJ_G0018042.1 mouse_genomes_project 11 52456419 52459325 - MGP_C3HHeJ_P0028778 Uqcrq protein_coding protein_coding MGP_C3HHeJ_T0028779.1 MGP_C3HHeJ_G0018042.1 mouse_genomes_project 11 52457450 52459329 - Uqcrq protein_coding processed_transcript MGP_C3HHeJ_T0028780.1 MGP_C3HHeJ_G0018042.1 mouse_genomes_project 11 52457450 52459325 - MGP_C3HHeJ_P0028780 Uqcrq protein_coding protein_coding MGP_C3HHeJ_T0028781.1 MGP_C3HHeJ_G0018042.1 mouse_genomes_project 11 52457450 52458932 - MGP_C3HHeJ_P0028781 Uqcrq protein_coding protein_coding MGP_C3HHeJ_T0006137.1 MGP_C3HHeJ_G0005116.1 mouse_genomes_project 11 30745723 30746687 - 4930555O08Rik lincRNA lincRNA MGP_C3HHeJ_T0000810.1 MGP_C3HHeJ_G0000751.1 mouse_genomes_project 11 15799219 15799815 + TEC TEC MGP_C3HHeJ_T0003299.1 MGP_C3HHeJ_G0003040.1 mouse_genomes_project 11 123537204 123560825 - Gm17178 antisense antisense MGP_C3HHeJ_T0012485.1 MGP_C3HHeJ_G0010589.1 mouse_genomes_project 11 52778350 52778703 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097844.1 MGP_C3HHeJ_G0036056.1 mouse_genomes_project 11 70463896 70464474 - pseudogene pseudogene MGP_C3HHeJ_T0028905.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030016 54080629 - MGP_C3HHeJ_P0028905 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028906.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030018 54080611 - Tnip1 protein_coding processed_transcript MGP_C3HHeJ_T0028907.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030018 54087403 - MGP_C3HHeJ_P0028907 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028908.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030018 54087399 - MGP_C3HHeJ_P0028908 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028909.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030018 54087404 - MGP_C3HHeJ_P0028909 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028910.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030018 54087397 - MGP_C3HHeJ_P0028910 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028911.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54030020 54087396 - MGP_C3HHeJ_P0028911 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028912.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54037843 54040307 - Tnip1 protein_coding retained_intron MGP_C3HHeJ_T0028913.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54046144 54080629 - MGP_C3HHeJ_P0028913 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028914.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54053469 54080554 - MGP_C3HHeJ_P0028914 Tnip1 protein_coding protein_coding MGP_C3HHeJ_T0028915.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54061533 54080594 - Tnip1 protein_coding processed_transcript MGP_C3HHeJ_T0028916.1 MGP_C3HHeJ_G0018073.1 mouse_genomes_project 11 54061587 54087396 - Tnip1 protein_coding processed_transcript MGP_C3HHeJ_T0101633.1 MGP_C3HHeJ_G0039599.1 mouse_genomes_project 11 53006214 53006386 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006262.1 MGP_C3HHeJ_G0005213.1 mouse_genomes_project 11 104490612 104496519 - 2810433D01Rik lincRNA lincRNA MGP_C3HHeJ_T0006263.1 MGP_C3HHeJ_G0005213.1 mouse_genomes_project 11 104491974 104496469 - 2810433D01Rik lincRNA lincRNA MGP_C3HHeJ_T0012368.1 MGP_C3HHeJ_G0010472.1 mouse_genomes_project 11 6259788 6260891 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006102.1 MGP_C3HHeJ_G0005088.1 mouse_genomes_project 11 16125437 16129587 - Gm28401 lincRNA lincRNA MGP_C3HHeJ_T0006103.1 MGP_C3HHeJ_G0005088.1 mouse_genomes_project 11 16125532 16129606 - Gm28401 lincRNA lincRNA MGP_C3HHeJ_T0031893.1 MGP_C3HHeJ_G0018822.1 mouse_genomes_project 11 100157575 100183703 + MGP_C3HHeJ_P0031893 Gsdma protein_coding protein_coding MGP_C3HHeJ_T0030781.1 MGP_C3HHeJ_G0018537.1 mouse_genomes_project 11 78828750 78834594 - MGP_C3HHeJ_P0030781 Tmem199 protein_coding protein_coding MGP_C3HHeJ_T0030782.1 MGP_C3HHeJ_G0018537.1 mouse_genomes_project 11 78828947 78830514 - Tmem199 protein_coding retained_intron MGP_C3HHeJ_T0030783.1 MGP_C3HHeJ_G0018537.1 mouse_genomes_project 11 78830203 78834467 - Tmem199 protein_coding retained_intron MGP_C3HHeJ_T0030784.1 MGP_C3HHeJ_G0018537.1 mouse_genomes_project 11 78831935 78834505 - Tmem199 protein_coding retained_intron MGP_C3HHeJ_T0030329.1 MGP_C3HHeJ_G0018432.1 mouse_genomes_project 11 74019318 74020368 + MGP_C3HHeJ_P0030329 Olfr23 protein_coding protein_coding MGP_C3HHeJ_T0032746.1 MGP_C3HHeJ_G0019042.1 mouse_genomes_project 11 108072303 108095754 + MGP_C3HHeJ_P0032746 Dcaf7 protein_coding protein_coding MGP_C3HHeJ_T0032747.1 MGP_C3HHeJ_G0019042.1 mouse_genomes_project 11 108072331 108085122 + Dcaf7 protein_coding retained_intron MGP_C3HHeJ_T0011212.1 MGP_C3HHeJ_G0009345.1 mouse_genomes_project 11 84467057 84467365 + Gm23211 misc_RNA misc_RNA MGP_C3HHeJ_T0100000.1 MGP_C3HHeJ_G0038194.1 mouse_genomes_project 11 22834378 22834506 - Gm24255 snoRNA snoRNA MGP_C3HHeJ_T0028863.1 MGP_C3HHeJ_G0018064.1 mouse_genomes_project 11 53359171 53361147 - MGP_C3HHeJ_P0028863 Il3 protein_coding protein_coding MGP_C3HHeJ_T0100001.1 MGP_C3HHeJ_G0038195.1 mouse_genomes_project 11 23289595 23289725 + Gm23514 snoRNA snoRNA MGP_C3HHeJ_T0028295.1 MGP_C3HHeJ_G0017911.1 mouse_genomes_project 11 33874159 33875662 - MGP_C3HHeJ_P0028295 Fbll1 protein_coding protein_coding MGP_C3HHeJ_T0028940.1 MGP_C3HHeJ_G0018082.1 mouse_genomes_project 11 54592493 54607074 - MGP_C3HHeJ_P0028940 Atox1 protein_coding protein_coding MGP_C3HHeJ_T0028941.1 MGP_C3HHeJ_G0018082.1 mouse_genomes_project 11 54592496 54607032 - Atox1 protein_coding processed_transcript MGP_C3HHeJ_T0098785.1 MGP_C3HHeJ_G0036979.1 mouse_genomes_project 11 70954870 70954976 - Gm22297 snRNA snRNA MGP_C3HHeJ_T0031417.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95170038 95218155 + Spag9 protein_coding processed_transcript MGP_C3HHeJ_T0031418.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95170050 95225178 + Spag9 protein_coding processed_transcript MGP_C3HHeJ_T0031419.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95170050 95301135 + MGP_C3HHeJ_P0031419 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031420.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218096 95273903 + MGP_C3HHeJ_P0031420 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031421.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218644 95282832 + MGP_C3HHeJ_P0031421 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031422.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218716 95235011 + Spag9 protein_coding processed_transcript MGP_C3HHeJ_T0031423.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218731 95301130 + MGP_C3HHeJ_P0031423 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031424.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218731 95301130 + MGP_C3HHeJ_P0031424 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031425.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218794 95301135 + MGP_C3HHeJ_P0031425 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031426.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95218891 95301133 + MGP_C3HHeJ_P0031426 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031427.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95245781 95301136 + MGP_C3HHeJ_P0031427 Spag9 protein_coding protein_coding MGP_C3HHeJ_T0031428.1 MGP_C3HHeJ_G0018704.1 mouse_genomes_project 11 95245866 95270267 + Spag9 protein_coding processed_transcript MGP_C3HHeJ_T0003075.1 MGP_C3HHeJ_G0002857.1 mouse_genomes_project 11 34379354 34381290 + Gm12127 antisense antisense MGP_C3HHeJ_T0029498.1 MGP_C3HHeJ_G0018235.1 mouse_genomes_project 11 66730528 66740673 + MGP_C3HHeJ_P0029498 Tmem220 protein_coding protein_coding MGP_C3HHeJ_T0029499.1 MGP_C3HHeJ_G0018235.1 mouse_genomes_project 11 66730528 66740161 + MGP_C3HHeJ_P0029499 Tmem220 protein_coding protein_coding MGP_C3HHeJ_T0012565.1 MGP_C3HHeJ_G0010669.1 mouse_genomes_project 11 79748249 79749205 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003074.1 MGP_C3HHeJ_G0002856.1 mouse_genomes_project 11 34173555 34177218 + Gm12126 antisense antisense MGP_C3HHeJ_T0028926.1 MGP_C3HHeJ_G0018078.1 mouse_genomes_project 11 54292794 54319367 - MGP_C3HHeJ_P0028926 Slc36a2 protein_coding protein_coding MGP_C3HHeJ_T0028927.1 MGP_C3HHeJ_G0018078.1 mouse_genomes_project 11 54302338 54319367 - Slc36a2 protein_coding processed_transcript MGP_C3HHeJ_T0012633.1 MGP_C3HHeJ_G0010737.1 mouse_genomes_project 11 109080407 109081239 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016960.1 MGP_C3HHeJ_G0014927.1 mouse_genomes_project 11 44257899 44290702 + F630206G17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0029032.1 MGP_C3HHeJ_G0018124.1 mouse_genomes_project 11 58053287 58054220 + MGP_C3HHeJ_P0029032 protein_coding protein_coding MGP_C3HHeJ_T0027485.1 MGP_C3HHeJ_G0017718.1 mouse_genomes_project 11 774064 784012 - MGP_C3HHeJ_P0027485 4921536K21Rik protein_coding protein_coding MGP_C3HHeJ_T0028257.1 MGP_C3HHeJ_G0017899.1 mouse_genomes_project 11 31252882 31253862 - Gm12117 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0028258.1 MGP_C3HHeJ_G0017899.1 mouse_genomes_project 11 31253003 31253459 - MGP_C3HHeJ_P0028258 Gm12117 protein_coding protein_coding MGP_C3HHeJ_T0101660.1 MGP_C3HHeJ_G0039626.1 mouse_genomes_project 11 101300952 101301089 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0030208.1 MGP_C3HHeJ_G0018391.1 mouse_genomes_project 11 72383724 72411035 - MGP_C3HHeJ_P0030208 Smtnl2 protein_coding protein_coding MGP_C3HHeJ_T0030209.1 MGP_C3HHeJ_G0018391.1 mouse_genomes_project 11 72397819 72401054 - Smtnl2 protein_coding processed_transcript MGP_C3HHeJ_T0030210.1 MGP_C3HHeJ_G0018391.1 mouse_genomes_project 11 72399431 72400687 - Smtnl2 protein_coding processed_transcript MGP_C3HHeJ_T0017065.1 MGP_C3HHeJ_G0014983.1 mouse_genomes_project 11 122343867 122365423 + Gm11762 processed_transcript processed_transcript MGP_C3HHeJ_T0031022.1 MGP_C3HHeJ_G0018606.1 mouse_genomes_project 11 84123469 84128216 - MGP_C3HHeJ_P0031022 Ccl5 protein_coding protein_coding MGP_C3HHeJ_T0031023.1 MGP_C3HHeJ_G0018606.1 mouse_genomes_project 11 84126429 84128211 - Ccl5 protein_coding retained_intron MGP_C3HHeJ_T0098766.1 MGP_C3HHeJ_G0036960.1 mouse_genomes_project 11 32934287 32934394 + Gm25799 snRNA snRNA MGP_C3HHeJ_T0012537.1 MGP_C3HHeJ_G0010641.1 mouse_genomes_project 11 70439275 70439594 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033949.1 MGP_C3HHeJ_G0019283.1 mouse_genomes_project 11 123913522 123916194 - MGP_C3HHeJ_P0033949 Cd7 protein_coding protein_coding MGP_C3HHeJ_T0033950.1 MGP_C3HHeJ_G0019283.1 mouse_genomes_project 11 123914660 123916194 - Cd7 protein_coding retained_intron MGP_C3HHeJ_T0012594.1 MGP_C3HHeJ_G0010698.1 mouse_genomes_project 11 93898258 93900075 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033929.1 MGP_C3HHeJ_G0019280.1 mouse_genomes_project 11 123686976 123798248 - MGP_C3HHeJ_P0033929 Ccdc57 protein_coding protein_coding MGP_C3HHeJ_T0033930.1 MGP_C3HHeJ_G0019280.1 mouse_genomes_project 11 123686989 123740301 - Ccdc57 protein_coding processed_transcript MGP_C3HHeJ_T0033931.1 MGP_C3HHeJ_G0019280.1 mouse_genomes_project 11 123687163 123798184 - MGP_C3HHeJ_P0033931 Ccdc57 protein_coding unknown_likely_coding MGP_C3HHeJ_T0033932.1 MGP_C3HHeJ_G0019280.1 mouse_genomes_project 11 123740421 123752505 - Ccdc57 protein_coding processed_transcript MGP_C3HHeJ_T0030415.1 MGP_C3HHeJ_G0018460.1 mouse_genomes_project 11 75337289 75410932 + MGP_C3HHeJ_P0030415 Rtn4rl1 protein_coding protein_coding MGP_C3HHeJ_T0009573.1 MGP_C3HHeJ_G0007706.1 mouse_genomes_project 11 22267896 22268039 - Gm25507 miRNA miRNA MGP_C3HHeJ_T0028821.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52825545 52832854 + MGP_C3HHeJ_P0028821 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028822.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52825579 52830634 + MGP_C3HHeJ_P0028822 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028823.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52825582 52833905 + MGP_C3HHeJ_P0028823 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028824.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52825602 52831909 + Irf1 protein_coding processed_transcript MGP_C3HHeJ_T0028825.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52825636 52829616 + MGP_C3HHeJ_P0028825 Irf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028826.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52826007 52828469 + MGP_C3HHeJ_P0028826 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028827.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52826017 52829725 + MGP_C3HHeJ_P0028827 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028828.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52826025 52832854 + MGP_C3HHeJ_P0028828 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028829.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52826039 52829488 + MGP_C3HHeJ_P0028829 Irf1 protein_coding protein_coding MGP_C3HHeJ_T0028831.1 MGP_C3HHeJ_G0018055.1 mouse_genomes_project 11 52828683 52829661 + Irf1 protein_coding retained_intron MGP_C3HHeJ_T0031614.1 MGP_C3HHeJ_G0018753.1 mouse_genomes_project 11 97431635 97444196 - MGP_C3HHeJ_P0031614 Calcoco2 protein_coding protein_coding MGP_C3HHeJ_T0031615.1 MGP_C3HHeJ_G0018753.1 mouse_genomes_project 11 97432171 97444194 - MGP_C3HHeJ_P0031615 Calcoco2 protein_coding protein_coding MGP_C3HHeJ_T0032149.1 MGP_C3HHeJ_G0018922.1 mouse_genomes_project 11 102477937 102505645 - MGP_C3HHeJ_P0032149 Stat5b protein_coding protein_coding MGP_C3HHeJ_T0032150.1 MGP_C3HHeJ_G0018922.1 mouse_genomes_project 11 102495795 102551693 - Stat5b protein_coding processed_transcript MGP_C3HHeJ_T0028420.1 MGP_C3HHeJ_G0017942.1 mouse_genomes_project 11 44434913 44472495 + MGP_C3HHeJ_P0028420 Sox30 protein_coding protein_coding MGP_C3HHeJ_T0033662.1 MGP_C3HHeJ_G0019231.1 mouse_genomes_project 11 122171727 122278187 + MGP_C3HHeJ_P0033662 Rnf213 protein_coding unknown_likely_coding MGP_C3HHeJ_T0033663.1 MGP_C3HHeJ_G0019231.1 mouse_genomes_project 11 122176041 122279446 + MGP_C3HHeJ_P0033663 Rnf213 protein_coding protein_coding MGP_C3HHeJ_T0033664.1 MGP_C3HHeJ_G0019231.1 mouse_genomes_project 11 122176041 122279443 + MGP_C3HHeJ_P0033664 Rnf213 protein_coding protein_coding MGP_C3HHeJ_T0033665.1 MGP_C3HHeJ_G0019231.1 mouse_genomes_project 11 122270086 122279445 + MGP_C3HHeJ_P0033665 Rnf213 protein_coding protein_coding MGP_C3HHeJ_T0006112.1 MGP_C3HHeJ_G0005097.1 mouse_genomes_project 11 20231601 20234301 - Gm12055 lincRNA lincRNA MGP_C3HHeJ_T0030163.1 MGP_C3HHeJ_G0018378.1 mouse_genomes_project 11 71114743 71156284 - MGP_C3HHeJ_P0030163 Nlrp1b protein_coding protein_coding MGP_C3HHeJ_T0030164.1 MGP_C3HHeJ_G0018378.1 mouse_genomes_project 11 71116985 71156188 - MGP_C3HHeJ_P0030164 Nlrp1b protein_coding protein_coding MGP_C3HHeJ_T0032742.1 MGP_C3HHeJ_G0019041.1 mouse_genomes_project 11 108047684 108069539 + MGP_C3HHeJ_P0032742 Kcnh6 protein_coding protein_coding MGP_C3HHeJ_T0032743.1 MGP_C3HHeJ_G0019041.1 mouse_genomes_project 11 108047733 108069981 + MGP_C3HHeJ_P0032743 Kcnh6 protein_coding protein_coding MGP_C3HHeJ_T0032744.1 MGP_C3HHeJ_G0019041.1 mouse_genomes_project 11 108047763 108069496 + MGP_C3HHeJ_P0032744 Kcnh6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032745.1 MGP_C3HHeJ_G0019041.1 mouse_genomes_project 11 108053346 108057047 + Kcnh6 protein_coding processed_transcript MGP_C3HHeJ_T0033077.1 MGP_C3HHeJ_G0019114.1 mouse_genomes_project 11 117394394 117409141 + MGP_C3HHeJ_P0033077 Cd300a protein_coding protein_coding MGP_C3HHeJ_T0033078.1 MGP_C3HHeJ_G0019114.1 mouse_genomes_project 11 117394394 117409141 + MGP_C3HHeJ_P0033078 Cd300a protein_coding protein_coding MGP_C3HHeJ_T0033079.1 MGP_C3HHeJ_G0019114.1 mouse_genomes_project 11 117394648 117397883 + Cd300a protein_coding processed_transcript MGP_C3HHeJ_T0033506.1 MGP_C3HHeJ_G0019196.1 mouse_genomes_project 11 120169606 120174252 + MGP_C3HHeJ_P0033506 Gm11733 protein_coding protein_coding MGP_C3HHeJ_T0009637.1 MGP_C3HHeJ_G0007770.1 mouse_genomes_project 11 80127429 80127541 + Mir365-2 miRNA miRNA MGP_C3HHeJ_T0017028.1 MGP_C3HHeJ_G0014964.1 mouse_genomes_project 11 99472265 99478552 + processed_transcript processed_transcript MGP_C3HHeJ_T0028235.1 MGP_C3HHeJ_G0017890.1 mouse_genomes_project 11 30390738 30453836 + MGP_C3HHeJ_P0028235 Ubtd2 protein_coding protein_coding MGP_C3HHeJ_T0033437.1 MGP_C3HHeJ_G0019183.1 mouse_genomes_project 11 119294796 119305453 - MGP_C3HHeJ_P0033437 Cygb protein_coding protein_coding MGP_C3HHeJ_T0000809.1 MGP_C3HHeJ_G0000750.1 mouse_genomes_project 11 13338537 13339173 + TEC TEC MGP_C3HHeJ_T0033635.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122042008 122061876 + MGP_C3HHeJ_P0033635 Gaa protein_coding protein_coding MGP_C3HHeJ_T0033636.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122042147 122061876 + MGP_C3HHeJ_P0033636 Gaa protein_coding protein_coding MGP_C3HHeJ_T0033637.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122042149 122050130 + MGP_C3HHeJ_P0033637 Gaa protein_coding protein_coding MGP_C3HHeJ_T0033638.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122044650 122051817 + Gaa protein_coding processed_transcript MGP_C3HHeJ_T0033639.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122051245 122055028 + MGP_C3HHeJ_P0033639 Gaa protein_coding protein_coding MGP_C3HHeJ_T0033640.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122051533 122052291 + MGP_C3HHeJ_P0033640 Gaa protein_coding protein_coding MGP_C3HHeJ_T0033641.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122054411 122057922 + MGP_C3HHeJ_P0033641 Gaa protein_coding protein_coding MGP_C3HHeJ_T0033642.1 MGP_C3HHeJ_G0019226.1 mouse_genomes_project 11 122055581 122056196 + Gaa protein_coding processed_transcript MGP_C3HHeJ_T0027864.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13806784 13815987 - MGP_C3HHeJ_P0027864 Sec61g protein_coding protein_coding MGP_C3HHeJ_T0027865.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13807641 13815669 - MGP_C3HHeJ_P0027865 Sec61g protein_coding protein_coding MGP_C3HHeJ_T0027866.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13807892 13815987 - MGP_C3HHeJ_P0027866 Sec61g protein_coding protein_coding MGP_C3HHeJ_T0027867.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13807892 13815987 - MGP_C3HHeJ_P0027867 Sec61g protein_coding protein_coding MGP_C3HHeJ_T0027868.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13807897 13812426 - Sec61g protein_coding retained_intron MGP_C3HHeJ_T0027869.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13807905 13815572 - MGP_C3HHeJ_P0027869 Sec61g protein_coding protein_coding MGP_C3HHeJ_T0027870.1 MGP_C3HHeJ_G0017805.1 mouse_genomes_project 11 13813473 13815635 - Sec61g protein_coding retained_intron MGP_C3HHeJ_T0100055.1 MGP_C3HHeJ_G0038249.1 mouse_genomes_project 11 119328546 119328621 + Snord1b snoRNA snoRNA MGP_C3HHeJ_T0009638.1 MGP_C3HHeJ_G0007771.1 mouse_genomes_project 11 83498668 83498731 - Gm27598 miRNA miRNA MGP_C3HHeJ_T0098796.1 MGP_C3HHeJ_G0036990.1 mouse_genomes_project 11 83093601 83093708 - Gm24612 snRNA snRNA MGP_C3HHeJ_T0012457.1 MGP_C3HHeJ_G0010561.1 mouse_genomes_project 11 39650621 39651165 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031763.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99111310 99123210 - MGP_C3HHeJ_P0031763 Pcgf2 protein_coding protein_coding MGP_C3HHeJ_T0031764.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99111310 99121870 - MGP_C3HHeJ_P0031764 Pcgf2 protein_coding protein_coding MGP_C3HHeJ_T0031765.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99112307 99123990 - MGP_C3HHeJ_P0031765 Pcgf2 protein_coding protein_coding MGP_C3HHeJ_T0031766.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99112307 99123210 - MGP_C3HHeJ_P0031766 Pcgf2 protein_coding protein_coding MGP_C3HHeJ_T0031767.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99112474 99116476 - MGP_C3HHeJ_P0031767 Pcgf2 protein_coding protein_coding MGP_C3HHeJ_T0031768.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99113015 99114897 - Pcgf2 protein_coding processed_transcript MGP_C3HHeJ_T0031769.1 MGP_C3HHeJ_G0018791.1 mouse_genomes_project 11 99119684 99123210 - Pcgf2 protein_coding processed_transcript MGP_C3HHeJ_T0012353.1 MGP_C3HHeJ_G0010457.1 mouse_genomes_project 11 2609634 2610078 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027448.1 MGP_C3HHeJ_G0017711.1 mouse_genomes_project 11 282616 319671 - MGP_C3HHeJ_P0027448 Rnf185 protein_coding protein_coding MGP_C3HHeJ_T0027449.1 MGP_C3HHeJ_G0017711.1 mouse_genomes_project 11 282616 319671 - MGP_C3HHeJ_P0027449 Rnf185 protein_coding protein_coding MGP_C3HHeJ_T0027450.1 MGP_C3HHeJ_G0017711.1 mouse_genomes_project 11 284510 319642 - Rnf185 protein_coding processed_transcript MGP_C3HHeJ_T0100009.1 MGP_C3HHeJ_G0038203.1 mouse_genomes_project 11 47354901 47354968 + Gm25296 snoRNA snoRNA MGP_C3HHeJ_T0012375.1 MGP_C3HHeJ_G0010479.1 mouse_genomes_project 11 11784417 11784820 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030928.1 MGP_C3HHeJ_G0018577.1 mouse_genomes_project 11 82544844 82549917 + MGP_C3HHeJ_P0030928 Ccl11 protein_coding protein_coding MGP_C3HHeJ_T0009691.1 MGP_C3HHeJ_G0007824.1 mouse_genomes_project 11 123465567 123465621 - Mir6936 miRNA miRNA MGP_C3HHeJ_T0027678.1 MGP_C3HHeJ_G0017763.1 mouse_genomes_project 11 2854935 2865077 + MGP_C3HHeJ_P0027678 Aebp1 protein_coding protein_coding MGP_C3HHeJ_T0027679.1 MGP_C3HHeJ_G0017763.1 mouse_genomes_project 11 2855140 2865082 + MGP_C3HHeJ_P0027679 Aebp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027680.1 MGP_C3HHeJ_G0017763.1 mouse_genomes_project 11 2860590 2865077 + MGP_C3HHeJ_P0027680 Aebp1 protein_coding protein_coding MGP_C3HHeJ_T0027681.1 MGP_C3HHeJ_G0017763.1 mouse_genomes_project 11 2862136 2863130 + Aebp1 protein_coding processed_transcript MGP_C3HHeJ_T0028545.1 MGP_C3HHeJ_G0017985.1 mouse_genomes_project 11 48367408 48387577 + Flt4 protein_coding processed_transcript MGP_C3HHeJ_T0028546.1 MGP_C3HHeJ_G0017985.1 mouse_genomes_project 11 48367408 48411206 + MGP_C3HHeJ_P0028546 Flt4 protein_coding protein_coding MGP_C3HHeJ_T0028547.1 MGP_C3HHeJ_G0017985.1 mouse_genomes_project 11 48367915 48409550 + MGP_C3HHeJ_P0028547 Flt4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009668.1 MGP_C3HHeJ_G0007801.1 mouse_genomes_project 11 104906587 104906661 - Mir6931 miRNA miRNA MGP_C3HHeJ_T0028450.1 MGP_C3HHeJ_G0017952.1 mouse_genomes_project 11 45040014 45057344 + MGP_C3HHeJ_P0028450 BC053393 protein_coding protein_coding MGP_C3HHeJ_T0030331.1 MGP_C3HHeJ_G0018434.1 mouse_genomes_project 11 74067483 74077357 - MGP_C3HHeJ_P0030331 Olfr398 protein_coding protein_coding MGP_C3HHeJ_T0030332.1 MGP_C3HHeJ_G0018434.1 mouse_genomes_project 11 74067483 74068428 - MGP_C3HHeJ_P0030332 Olfr398 protein_coding protein_coding MGP_C3HHeJ_T0003205.1 MGP_C3HHeJ_G0002964.1 mouse_genomes_project 11 97633422 97648907 - Hoxb5os antisense antisense MGP_C3HHeJ_T0003206.1 MGP_C3HHeJ_G0002964.1 mouse_genomes_project 11 97635881 97647078 - Hoxb5os antisense antisense MGP_C3HHeJ_T0100008.1 MGP_C3HHeJ_G0038202.1 mouse_genomes_project 11 47236359 47236478 + Gm24422 snoRNA snoRNA MGP_C3HHeJ_T0027781.1 MGP_C3HHeJ_G0017787.1 mouse_genomes_project 11 4277795 4282597 + MGP_C3HHeJ_P0027781 Igfbp1 protein_coding protein_coding MGP_C3HHeJ_T0033470.1 MGP_C3HHeJ_G0019191.1 mouse_genomes_project 11 119478948 119482128 - MGP_C3HHeJ_P0033470 Srsf2 protein_coding protein_coding MGP_C3HHeJ_T0033471.1 MGP_C3HHeJ_G0019191.1 mouse_genomes_project 11 119478951 119481253 - Srsf2 protein_coding retained_intron MGP_C3HHeJ_T0033472.1 MGP_C3HHeJ_G0019191.1 mouse_genomes_project 11 119478953 119481120 - MGP_C3HHeJ_P0033472 Srsf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033473.1 MGP_C3HHeJ_G0019191.1 mouse_genomes_project 11 119479091 119482106 - MGP_C3HHeJ_P0033473 Srsf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033474.1 MGP_C3HHeJ_G0019191.1 mouse_genomes_project 11 119479099 119482106 - MGP_C3HHeJ_P0033474 Srsf2 protein_coding protein_coding MGP_C3HHeJ_T0033475.1 MGP_C3HHeJ_G0019191.1 mouse_genomes_project 11 119479153 119480605 - Srsf2 protein_coding processed_transcript MGP_C3HHeJ_T0033492.1 MGP_C3HHeJ_G0019194.1 mouse_genomes_project 11 119773431 119811624 + Sec14l1 protein_coding retained_intron MGP_C3HHeJ_T0033493.1 MGP_C3HHeJ_G0019194.1 mouse_genomes_project 11 119773435 119818608 + MGP_C3HHeJ_P0033493 Sec14l1 protein_coding protein_coding MGP_C3HHeJ_T0033494.1 MGP_C3HHeJ_G0019194.1 mouse_genomes_project 11 119773501 119816902 + MGP_C3HHeJ_P0033494 Sec14l1 protein_coding protein_coding MGP_C3HHeJ_T0033495.1 MGP_C3HHeJ_G0019194.1 mouse_genomes_project 11 119773501 119818611 + MGP_C3HHeJ_P0033495 Sec14l1 protein_coding protein_coding MGP_C3HHeJ_T0033496.1 MGP_C3HHeJ_G0019194.1 mouse_genomes_project 11 119773515 119787028 + Sec14l1 protein_coding processed_transcript MGP_C3HHeJ_T0033497.1 MGP_C3HHeJ_G0019194.1 mouse_genomes_project 11 119814414 119815823 + Sec14l1 protein_coding retained_intron MGP_C3HHeJ_T0028655.1 MGP_C3HHeJ_G0018010.1 mouse_genomes_project 11 49754567 49757527 - MGP_C3HHeJ_P0028655 Prop1 protein_coding protein_coding MGP_C3HHeJ_T0028656.1 MGP_C3HHeJ_G0018010.1 mouse_genomes_project 11 49754953 49756216 - Prop1 protein_coding retained_intron MGP_C3HHeJ_T0028657.1 MGP_C3HHeJ_G0018010.1 mouse_genomes_project 11 49755975 49757513 - MGP_C3HHeJ_P0028657 Prop1 protein_coding protein_coding MGP_C3HHeJ_T0031842.1 MGP_C3HHeJ_G0018808.1 mouse_genomes_project 11 99796494 99800718 - MGP_C3HHeJ_P0031842 Neurod2 protein_coding protein_coding MGP_C3HHeJ_T0016921.1 MGP_C3HHeJ_G0014908.1 mouse_genomes_project 11 403995 410273 + Gm11946 processed_transcript processed_transcript MGP_C3HHeJ_T0016922.1 MGP_C3HHeJ_G0014908.1 mouse_genomes_project 11 404786 410695 + Gm11946 processed_transcript processed_transcript MGP_C3HHeJ_T0003298.1 MGP_C3HHeJ_G0003039.1 mouse_genomes_project 11 123501886 123504545 + Notumos antisense antisense MGP_C3HHeJ_T0003103.1 MGP_C3HHeJ_G0002883.1 mouse_genomes_project 11 54325989 54331846 - Slc36a1os antisense antisense MGP_C3HHeJ_T0003104.1 MGP_C3HHeJ_G0002883.1 mouse_genomes_project 11 54327256 54332028 - Slc36a1os antisense antisense MGP_C3HHeJ_T0030641.1 MGP_C3HHeJ_G0018509.1 mouse_genomes_project 11 78073832 78076127 - MGP_C3HHeJ_P0030641 Gm10277 protein_coding protein_coding MGP_C3HHeJ_T0028641.1 MGP_C3HHeJ_G0018006.1 mouse_genomes_project 11 49672089 49686585 - MGP_C3HHeJ_P0028641 Zfp454 protein_coding protein_coding MGP_C3HHeJ_T0028642.1 MGP_C3HHeJ_G0018006.1 mouse_genomes_project 11 49673257 49686734 - Zfp454 protein_coding processed_transcript MGP_C3HHeJ_T0028643.1 MGP_C3HHeJ_G0018006.1 mouse_genomes_project 11 49676978 49686734 - MGP_C3HHeJ_P0028643 Zfp454 protein_coding protein_coding MGP_C3HHeJ_T0028644.1 MGP_C3HHeJ_G0018006.1 mouse_genomes_project 11 49677190 49686613 - Zfp454 protein_coding processed_transcript MGP_C3HHeJ_T0100030.1 MGP_C3HHeJ_G0038224.1 mouse_genomes_project 11 77284039 77284160 + Gm22772 snoRNA snoRNA MGP_C3HHeJ_T0012405.1 MGP_C3HHeJ_G0010509.1 mouse_genomes_project 11 18739246 18739426 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012616.1 MGP_C3HHeJ_G0010720.1 mouse_genomes_project 11 103099580 103099800 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032703.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107196869 107304266 + MGP_C3HHeJ_P0032703 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032704.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107198808 107229939 + Tlk2 protein_coding retained_intron MGP_C3HHeJ_T0032705.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107200561 107302479 + MGP_C3HHeJ_P0032705 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032706.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107200634 107296757 + MGP_C3HHeJ_P0032706 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032707.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107200758 107302478 + MGP_C3HHeJ_P0032707 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032708.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107200823 107297171 + MGP_C3HHeJ_P0032708 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032709.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107200840 107302478 + MGP_C3HHeJ_P0032709 Tlk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032710.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107201058 107230642 + MGP_C3HHeJ_P0032710 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032711.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107227499 107260454 + Tlk2 protein_coding retained_intron MGP_C3HHeJ_T0032712.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107228936 107269295 + MGP_C3HHeJ_P0032712 Tlk2 protein_coding protein_coding MGP_C3HHeJ_T0032713.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107266561 107267478 + Tlk2 protein_coding retained_intron MGP_C3HHeJ_T0032714.1 MGP_C3HHeJ_G0019034.1 mouse_genomes_project 11 107272581 107290520 + Tlk2 protein_coding processed_transcript MGP_C3HHeJ_T0029024.1 MGP_C3HHeJ_G0018117.1 mouse_genomes_project 11 57897763 57898735 - MGP_C3HHeJ_P0029024 Olfr323 protein_coding protein_coding MGP_C3HHeJ_T0029025.1 MGP_C3HHeJ_G0018117.1 mouse_genomes_project 11 57897763 57898732 - MGP_C3HHeJ_P0029025 Olfr323 protein_coding protein_coding MGP_C3HHeJ_T0031285.1 MGP_C3HHeJ_G0018667.1 mouse_genomes_project 11 88610046 88630381 - MGP_C3HHeJ_P0031285 Lpo protein_coding protein_coding MGP_C3HHeJ_T0031286.1 MGP_C3HHeJ_G0018667.1 mouse_genomes_project 11 88620395 88621334 - Lpo protein_coding retained_intron MGP_C3HHeJ_T0031287.1 MGP_C3HHeJ_G0018667.1 mouse_genomes_project 11 88621562 88632431 - MGP_C3HHeJ_P0031287 Lpo protein_coding protein_coding MGP_C3HHeJ_T0012474.1 MGP_C3HHeJ_G0010578.1 mouse_genomes_project 11 48112938 48113850 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098797.1 MGP_C3HHeJ_G0036991.1 mouse_genomes_project 11 83853121 83853312 + Gm23444 snRNA snRNA MGP_C3HHeJ_T0097988.1 MGP_C3HHeJ_G0036200.1 mouse_genomes_project 11 20582358 20582458 - Gm23740 rRNA rRNA MGP_C3HHeJ_T0028039.1 MGP_C3HHeJ_G0017848.1 mouse_genomes_project 11 21424628 21457195 - MGP_C3HHeJ_P0028039 Papolg protein_coding protein_coding MGP_C3HHeJ_T0028040.1 MGP_C3HHeJ_G0017848.1 mouse_genomes_project 11 21427226 21430453 - MGP_C3HHeJ_P0028040 Papolg protein_coding protein_coding MGP_C3HHeJ_T0028041.1 MGP_C3HHeJ_G0017848.1 mouse_genomes_project 11 21428393 21453846 - Papolg protein_coding processed_transcript MGP_C3HHeJ_T0028042.1 MGP_C3HHeJ_G0017848.1 mouse_genomes_project 11 21432034 21457178 - MGP_C3HHeJ_P0028042 Papolg protein_coding protein_coding MGP_C3HHeJ_T0031780.1 MGP_C3HHeJ_G0018796.1 mouse_genomes_project 11 99211847 99217641 - MGP_C3HHeJ_P0031780 Rpl23 protein_coding protein_coding MGP_C3HHeJ_T0031781.1 MGP_C3HHeJ_G0018796.1 mouse_genomes_project 11 99212358 99217480 - Rpl23 protein_coding processed_transcript MGP_C3HHeJ_T0031782.1 MGP_C3HHeJ_G0018796.1 mouse_genomes_project 11 99212376 99214039 - Rpl23 protein_coding processed_transcript MGP_C3HHeJ_T0031783.1 MGP_C3HHeJ_G0018796.1 mouse_genomes_project 11 99216565 99217566 - Rpl23 protein_coding processed_transcript MGP_C3HHeJ_T0031784.1 MGP_C3HHeJ_G0018796.1 mouse_genomes_project 11 99216607 99217586 - MGP_C3HHeJ_P0031784 Rpl23 protein_coding protein_coding MGP_C3HHeJ_T0031610.1 MGP_C3HHeJ_G0018752.1 mouse_genomes_project 11 97397138 97404025 - MGP_C3HHeJ_P0031610 Atp5g1 protein_coding protein_coding MGP_C3HHeJ_T0031611.1 MGP_C3HHeJ_G0018752.1 mouse_genomes_project 11 97397153 97403390 - MGP_C3HHeJ_P0031611 Atp5g1 protein_coding protein_coding MGP_C3HHeJ_T0031612.1 MGP_C3HHeJ_G0018752.1 mouse_genomes_project 11 97401342 97403936 - MGP_C3HHeJ_P0031612 Atp5g1 protein_coding protein_coding MGP_C3HHeJ_T0031613.1 MGP_C3HHeJ_G0018752.1 mouse_genomes_project 11 97401345 97403974 - MGP_C3HHeJ_P0031613 Atp5g1 protein_coding protein_coding MGP_C3HHeJ_T0029099.1 MGP_C3HHeJ_G0018151.1 mouse_genomes_project 11 58790778 58799224 + MGP_C3HHeJ_P0029099 Jmjd4 protein_coding protein_coding MGP_C3HHeJ_T0029100.1 MGP_C3HHeJ_G0018151.1 mouse_genomes_project 11 58790778 58799318 + MGP_C3HHeJ_P0029100 Jmjd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029101.1 MGP_C3HHeJ_G0018151.1 mouse_genomes_project 11 58790778 58799224 + MGP_C3HHeJ_P0029101 Jmjd4 protein_coding protein_coding MGP_C3HHeJ_T0029102.1 MGP_C3HHeJ_G0018151.1 mouse_genomes_project 11 58790854 58796844 + Jmjd4 protein_coding retained_intron MGP_C3HHeJ_T0031660.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98181091 98187691 - MGP_C3HHeJ_P0031660 Nfe2l1 protein_coding protein_coding MGP_C3HHeJ_T0031661.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98181091 98193556 - MGP_C3HHeJ_P0031661 Nfe2l1 protein_coding protein_coding MGP_C3HHeJ_T0031662.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98181276 98191397 - MGP_C3HHeJ_P0031662 Nfe2l1 protein_coding protein_coding MGP_C3HHeJ_T0031663.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98183770 98187805 - MGP_C3HHeJ_P0031663 Nfe2l1 protein_coding protein_coding MGP_C3HHeJ_T0031664.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98184147 98187686 - MGP_C3HHeJ_P0031664 Nfe2l1 protein_coding protein_coding MGP_C3HHeJ_T0031665.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98185023 98186403 - Nfe2l1 protein_coding processed_transcript MGP_C3HHeJ_T0031666.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98185900 98188230 - Nfe2l1 protein_coding processed_transcript MGP_C3HHeJ_T0031667.1 MGP_C3HHeJ_G0018768.1 mouse_genomes_project 11 98191410 98193179 - Nfe2l1 protein_coding processed_transcript MGP_C3HHeJ_T0032031.1 MGP_C3HHeJ_G0018887.1 mouse_genomes_project 11 101682204 101687573 - MGP_C3HHeJ_P0032031 Krt34 protein_coding protein_coding MGP_C3HHeJ_T0033689.1 MGP_C3HHeJ_G0019235.1 mouse_genomes_project 11 122712854 122715119 + MGP_C3HHeJ_P0033689 Chmp6 protein_coding protein_coding MGP_C3HHeJ_T0033690.1 MGP_C3HHeJ_G0019235.1 mouse_genomes_project 11 122712899 122718563 + MGP_C3HHeJ_P0033690 Chmp6 protein_coding protein_coding MGP_C3HHeJ_T0033691.1 MGP_C3HHeJ_G0019235.1 mouse_genomes_project 11 122714846 122718073 + Chmp6 protein_coding retained_intron MGP_C3HHeJ_T0033692.1 MGP_C3HHeJ_G0019235.1 mouse_genomes_project 11 122715755 122717653 + Chmp6 protein_coding retained_intron MGP_C3HHeJ_T0028963.1 MGP_C3HHeJ_G0018091.1 mouse_genomes_project 11 57017074 57025685 + MGP_C3HHeJ_P0028963 Sap30l protein_coding protein_coding MGP_C3HHeJ_T0034011.1 MGP_C3HHeJ_G0019300.1 mouse_genomes_project 11 124513934 124573336 - MGP_C3HHeJ_P0034011 B3gntl1 protein_coding protein_coding MGP_C3HHeJ_T0034012.1 MGP_C3HHeJ_G0019300.1 mouse_genomes_project 11 124525005 124573336 - MGP_C3HHeJ_P0034012 B3gntl1 protein_coding protein_coding MGP_C3HHeJ_T0003076.1 MGP_C3HHeJ_G0002858.1 mouse_genomes_project 11 41567983 41629044 - Gm12146 antisense antisense MGP_C3HHeJ_T0031539.1 MGP_C3HHeJ_G0018732.1 mouse_genomes_project 11 96393652 96398826 + MGP_C3HHeJ_P0031539 Dlx3 protein_coding protein_coding MGP_C3HHeJ_T0012355.1 MGP_C3HHeJ_G0010459.1 mouse_genomes_project 11 3174521 3174877 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032015.1 MGP_C3HHeJ_G0018871.1 mouse_genomes_project 11 101363372 101364340 - MGP_C3HHeJ_P0032015 Krtap4-8 protein_coding protein_coding MGP_C3HHeJ_T0031848.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99832354 99856406 + MGP_C3HHeJ_P0031848 Stard3 protein_coding protein_coding MGP_C3HHeJ_T0031849.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99832416 99852138 + Stard3 protein_coding processed_transcript MGP_C3HHeJ_T0031850.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99832417 99856419 + Stard3 protein_coding processed_transcript MGP_C3HHeJ_T0031851.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99832430 99852143 + Stard3 protein_coding processed_transcript MGP_C3HHeJ_T0031852.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99850827 99853956 + Stard3 protein_coding processed_transcript MGP_C3HHeJ_T0031853.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99851754 99853537 + Stard3 protein_coding processed_transcript MGP_C3HHeJ_T0031854.1 MGP_C3HHeJ_G0018810.1 mouse_genomes_project 11 99853463 99854656 + Stard3 protein_coding processed_transcript MGP_C3HHeJ_T0009607.1 MGP_C3HHeJ_G0007740.1 mouse_genomes_project 11 66808449 66808521 + Mir6923 miRNA miRNA MGP_C3HHeJ_T0030408.1 MGP_C3HHeJ_G0018458.1 mouse_genomes_project 11 75317255 75320149 - MGP_C3HHeJ_P0030408 Ovca2 protein_coding protein_coding MGP_C3HHeJ_T0030411.1 MGP_C3HHeJ_G0018458.1 mouse_genomes_project 11 75319114 75320101 - Ovca2 protein_coding processed_transcript MGP_C3HHeJ_T0006177.1 MGP_C3HHeJ_G0005153.1 mouse_genomes_project 11 62331779 62336042 + Gm27194 lincRNA lincRNA MGP_C3HHeJ_T0030619.1 MGP_C3HHeJ_G0018503.1 mouse_genomes_project 11 77774321 77779240 + MGP_C3HHeJ_P0030619 Abhd15 protein_coding protein_coding MGP_C3HHeJ_T0030620.1 MGP_C3HHeJ_G0018503.1 mouse_genomes_project 11 77775184 77798341 + MGP_C3HHeJ_P0030620 Abhd15 protein_coding protein_coding MGP_C3HHeJ_T0030622.1 MGP_C3HHeJ_G0018503.1 mouse_genomes_project 11 77777812 77798339 + MGP_C3HHeJ_P0030622 Abhd15 protein_coding protein_coding MGP_C3HHeJ_T0012449.1 MGP_C3HHeJ_G0010553.1 mouse_genomes_project 11 34088886 34089622 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012480.1 MGP_C3HHeJ_G0010584.1 mouse_genomes_project 11 49962627 49963866 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032396.1 MGP_C3HHeJ_G0018975.1 mouse_genomes_project 11 103996538 104020261 - MGP_C3HHeJ_P0032396 Lsm12 protein_coding protein_coding MGP_C3HHeJ_T0032397.1 MGP_C3HHeJ_G0018975.1 mouse_genomes_project 11 103996538 104020328 - MGP_C3HHeJ_P0032397 Lsm12 protein_coding protein_coding MGP_C3HHeJ_T0032398.1 MGP_C3HHeJ_G0018975.1 mouse_genomes_project 11 103997982 104017872 - Lsm12 protein_coding processed_transcript MGP_C3HHeJ_T0032399.1 MGP_C3HHeJ_G0018975.1 mouse_genomes_project 11 103998146 104020289 - Lsm12 protein_coding processed_transcript MGP_C3HHeJ_T0032400.1 MGP_C3HHeJ_G0018975.1 mouse_genomes_project 11 104001171 104020293 - Lsm12 protein_coding processed_transcript MGP_C3HHeJ_T0033966.1 MGP_C3HHeJ_G0019288.1 mouse_genomes_project 11 124043060 124044763 + MGP_C3HHeJ_P0033966 Uts2r protein_coding protein_coding MGP_C3HHeJ_T0003164.1 MGP_C3HHeJ_G0002933.1 mouse_genomes_project 11 78714043 78725216 + Slc13a2os antisense antisense MGP_C3HHeJ_T0012402.1 MGP_C3HHeJ_G0010506.1 mouse_genomes_project 11 18553285 18553579 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028272.1 MGP_C3HHeJ_G0017904.1 mouse_genomes_project 11 32066481 32112294 + MGP_C3HHeJ_P0028272 Lcp2 protein_coding protein_coding MGP_C3HHeJ_T0028273.1 MGP_C3HHeJ_G0017904.1 mouse_genomes_project 11 32066699 32110221 + MGP_C3HHeJ_P0028273 Lcp2 protein_coding protein_coding MGP_C3HHeJ_T0028274.1 MGP_C3HHeJ_G0017904.1 mouse_genomes_project 11 32066732 32112279 + MGP_C3HHeJ_P0028274 Lcp2 protein_coding protein_coding MGP_C3HHeJ_T0028275.1 MGP_C3HHeJ_G0017904.1 mouse_genomes_project 11 32098286 32098702 + Lcp2 protein_coding processed_transcript MGP_C3HHeJ_T0028276.1 MGP_C3HHeJ_G0017904.1 mouse_genomes_project 11 32107093 32110750 + Lcp2 protein_coding processed_transcript MGP_C3HHeJ_T0006095.1 MGP_C3HHeJ_G0005081.1 mouse_genomes_project 11 1184654 1186134 + Gm11958 lincRNA lincRNA MGP_C3HHeJ_T0030327.1 MGP_C3HHeJ_G0018431.1 mouse_genomes_project 11 73984139 73985078 - MGP_C3HHeJ_P0030327 Olfr395 protein_coding protein_coding MGP_C3HHeJ_T0012507.1 MGP_C3HHeJ_G0010611.1 mouse_genomes_project 11 58939044 58939697 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030964.1 MGP_C3HHeJ_G0018587.1 mouse_genomes_project 11 83402720 83411274 + MGP_C3HHeJ_P0030964 Fndc8 protein_coding protein_coding MGP_C3HHeJ_T0029054.1 MGP_C3HHeJ_G0018138.1 mouse_genomes_project 11 58292944 58300808 + MGP_C3HHeJ_P0029054 Trim17 protein_coding protein_coding MGP_C3HHeJ_T0101116.1 MGP_C3HHeJ_G0039292.1 mouse_genomes_project 11 3694780 3704755 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101117.1 MGP_C3HHeJ_G0039292.1 mouse_genomes_project 11 3695006 3695472 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101118.1 MGP_C3HHeJ_G0039292.1 mouse_genomes_project 11 3695780 3703258 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101119.1 MGP_C3HHeJ_G0039292.1 mouse_genomes_project 11 3696053 3704732 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0033080.1 MGP_C3HHeJ_G0019115.1 mouse_genomes_project 11 117427967 117439371 - MGP_C3HHeJ_P0033080 Cd300lb protein_coding protein_coding MGP_C3HHeJ_T0033081.1 MGP_C3HHeJ_G0019115.1 mouse_genomes_project 11 117427967 117439356 - MGP_C3HHeJ_P0033081 Cd300lb protein_coding protein_coding MGP_C3HHeJ_T0033082.1 MGP_C3HHeJ_G0019115.1 mouse_genomes_project 11 117433576 117439272 - Cd300lb protein_coding processed_transcript MGP_C3HHeJ_T0006301.1 MGP_C3HHeJ_G0005243.1 mouse_genomes_project 11 121891744 121908091 - Gm11755 lincRNA lincRNA MGP_C3HHeJ_T0003226.1 MGP_C3HHeJ_G0002978.1 mouse_genomes_project 11 101698354 101732307 + Gm11571 antisense antisense MGP_C3HHeJ_T0033857.1 MGP_C3HHeJ_G0019268.1 mouse_genomes_project 11 123487894 123490022 - MGP_C3HHeJ_P0033857 Myadml2 protein_coding protein_coding MGP_C3HHeJ_T0033858.1 MGP_C3HHeJ_G0019268.1 mouse_genomes_project 11 123487895 123488946 - Myadml2 protein_coding processed_transcript MGP_C3HHeJ_T0030703.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78481693 78485463 + MGP_C3HHeJ_P0030703 Tlcd1 protein_coding protein_coding MGP_C3HHeJ_T0030704.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78483112 78484605 + MGP_C3HHeJ_P0030704 Tlcd1 protein_coding protein_coding MGP_C3HHeJ_T0030705.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78483131 78485137 + Tlcd1 protein_coding processed_transcript MGP_C3HHeJ_T0030706.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78483633 78486892 + MGP_C3HHeJ_P0030706 Tlcd1 protein_coding protein_coding MGP_C3HHeJ_T0030707.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78483667 78485803 + MGP_C3HHeJ_P0030707 Tlcd1 protein_coding protein_coding MGP_C3HHeJ_T0030708.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78483713 78484590 + Tlcd1 protein_coding retained_intron MGP_C3HHeJ_T0030709.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78483744 78484858 + MGP_C3HHeJ_P0030709 Tlcd1 protein_coding protein_coding MGP_C3HHeJ_T0030710.1 MGP_C3HHeJ_G0018519.1 mouse_genomes_project 11 78484255 78485074 + Tlcd1 protein_coding retained_intron MGP_C3HHeJ_T0098790.1 MGP_C3HHeJ_G0036984.1 mouse_genomes_project 11 75058845 75058936 - Gm22733 snRNA snRNA MGP_C3HHeJ_T0028964.1 MGP_C3HHeJ_G0018092.1 mouse_genomes_project 11 57047284 57051393 - MGP_C3HHeJ_P0028964 Hand1 protein_coding protein_coding MGP_C3HHeJ_T0028965.1 MGP_C3HHeJ_G0018092.1 mouse_genomes_project 11 57047286 57050732 - MGP_C3HHeJ_P0028965 Hand1 protein_coding protein_coding MGP_C3HHeJ_T0028966.1 MGP_C3HHeJ_G0018092.1 mouse_genomes_project 11 57050278 57051393 - MGP_C3HHeJ_P0028966 Hand1 protein_coding protein_coding MGP_C3HHeJ_T0029577.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68479950 68487663 + Myh10 protein_coding processed_transcript MGP_C3HHeJ_T0029578.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68480306 68607314 + MGP_C3HHeJ_P0029578 Myh10 protein_coding protein_coding MGP_C3HHeJ_T0029579.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68480469 68487822 + Myh10 protein_coding processed_transcript MGP_C3HHeJ_T0029580.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68480472 68536714 + MGP_C3HHeJ_P0029580 Myh10 protein_coding protein_coding MGP_C3HHeJ_T0029581.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68480503 68607294 + MGP_C3HHeJ_P0029581 Myh10 protein_coding protein_coding MGP_C3HHeJ_T0029582.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68480545 68559865 + Myh10 protein_coding retained_intron MGP_C3HHeJ_T0029583.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68480707 68607306 + MGP_C3HHeJ_P0029583 Myh10 protein_coding protein_coding MGP_C3HHeJ_T0029584.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68573653 68580298 + Myh10 protein_coding processed_transcript MGP_C3HHeJ_T0029585.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68602195 68603788 + Myh10 protein_coding processed_transcript MGP_C3HHeJ_T0029586.1 MGP_C3HHeJ_G0018257.1 mouse_genomes_project 11 68605043 68607226 + Myh10 protein_coding processed_transcript MGP_C3HHeJ_T0032007.1 MGP_C3HHeJ_G0018863.1 mouse_genomes_project 11 101205500 101208499 - MGP_C3HHeJ_P0032007 protein_coding protein_coding MGP_C3HHeJ_T0032294.1 MGP_C3HHeJ_G0018954.1 mouse_genomes_project 11 103211523 103223585 + MGP_C3HHeJ_P0032294 Ifi35 protein_coding protein_coding MGP_C3HHeJ_T0032295.1 MGP_C3HHeJ_G0018954.1 mouse_genomes_project 11 103211560 103223012 + Ifi35 protein_coding retained_intron MGP_C3HHeJ_T0032296.1 MGP_C3HHeJ_G0018954.1 mouse_genomes_project 11 103211686 103223351 + MGP_C3HHeJ_P0032296 Ifi35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012358.1 MGP_C3HHeJ_G0010462.1 mouse_genomes_project 11 3458450 3458738 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030623.1 MGP_C3HHeJ_G0018505.1 mouse_genomes_project 11 77797600 77875705 - MGP_C3HHeJ_P0030623 Taok1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032057.1 MGP_C3HHeJ_G0018901.1 mouse_genomes_project 11 102023995 102026585 + MGP_C3HHeJ_P0032057 Gast protein_coding protein_coding MGP_C3HHeJ_T0030264.1 MGP_C3HHeJ_G0018403.1 mouse_genomes_project 11 73073343 73114439 + MGP_C3HHeJ_P0030264 Ncbp3 protein_coding protein_coding MGP_C3HHeJ_T0030265.1 MGP_C3HHeJ_G0018403.1 mouse_genomes_project 11 73073430 73084819 + Ncbp3 protein_coding retained_intron MGP_C3HHeJ_T0030266.1 MGP_C3HHeJ_G0018403.1 mouse_genomes_project 11 73073433 73082892 + Ncbp3 protein_coding retained_intron MGP_C3HHeJ_T0033173.1 MGP_C3HHeJ_G0019138.1 mouse_genomes_project 11 118042582 118056816 + MGP_C3HHeJ_P0033173 Armc7 protein_coding protein_coding MGP_C3HHeJ_T0033174.1 MGP_C3HHeJ_G0019138.1 mouse_genomes_project 11 118042613 118050257 + Armc7 protein_coding processed_transcript MGP_C3HHeJ_T0033175.1 MGP_C3HHeJ_G0019138.1 mouse_genomes_project 11 118042657 118051770 + Armc7 protein_coding processed_transcript MGP_C3HHeJ_T0033176.1 MGP_C3HHeJ_G0019138.1 mouse_genomes_project 11 118042869 118055411 + Armc7 protein_coding processed_transcript MGP_C3HHeJ_T0028334.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40443401 40497982 - MGP_C3HHeJ_P0028334 Gabra1 protein_coding protein_coding MGP_C3HHeJ_T0028335.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40443401 40497215 - MGP_C3HHeJ_P0028335 Gabra1 protein_coding protein_coding MGP_C3HHeJ_T0028336.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40448016 40492940 - MGP_C3HHeJ_P0028336 Gabra1 protein_coding protein_coding MGP_C3HHeJ_T0028337.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40467696 40493053 - MGP_C3HHeJ_P0028337 Gabra1 protein_coding protein_coding MGP_C3HHeJ_T0028338.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40489080 40497982 - MGP_C3HHeJ_P0028338 Gabra1 protein_coding protein_coding MGP_C3HHeJ_T0028339.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40490386 40497512 - Gabra1 protein_coding processed_transcript MGP_C3HHeJ_T0028340.1 MGP_C3HHeJ_G0017920.1 mouse_genomes_project 11 40492656 40497962 - MGP_C3HHeJ_P0028340 Gabra1 protein_coding protein_coding MGP_C3HHeJ_T0029768.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69512291 69529484 - protein_coding retained_intron MGP_C3HHeJ_T0029769.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69522107 69524951 - protein_coding processed_transcript MGP_C3HHeJ_T0029770.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69525648 69529590 - MGP_C3HHeJ_P0029770 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029771.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69526321 69529483 - protein_coding processed_transcript MGP_C3HHeJ_T0029772.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69526329 69528050 - protein_coding processed_transcript MGP_C3HHeJ_T0029773.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69527299 69529482 - protein_coding processed_transcript MGP_C3HHeJ_T0029774.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69527346 69528897 - protein_coding processed_transcript MGP_C3HHeJ_T0029775.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69527414 69528389 - protein_coding retained_intron MGP_C3HHeJ_T0029776.1 MGP_C3HHeJ_G0018299.1 mouse_genomes_project 11 69527635 69528617 - protein_coding retained_intron MGP_C3HHeJ_T0028537.1 MGP_C3HHeJ_G0017977.1 mouse_genomes_project 11 48023801 48030269 + MGP_C3HHeJ_P0028537 protein_coding protein_coding MGP_C3HHeJ_T0006207.1 MGP_C3HHeJ_G0005177.1 mouse_genomes_project 11 78764046 78764841 + Gm11195 lincRNA lincRNA MGP_C3HHeJ_T0028957.1 MGP_C3HHeJ_G0018089.1 mouse_genomes_project 11 56719346 56734765 + MGP_C3HHeJ_P0028957 Mfap3 protein_coding protein_coding MGP_C3HHeJ_T0028958.1 MGP_C3HHeJ_G0018089.1 mouse_genomes_project 11 56719368 56729919 + Mfap3 protein_coding retained_intron MGP_C3HHeJ_T0028959.1 MGP_C3HHeJ_G0018089.1 mouse_genomes_project 11 56719369 56734764 + MGP_C3HHeJ_P0028959 Mfap3 protein_coding protein_coding MGP_C3HHeJ_T0028960.1 MGP_C3HHeJ_G0018089.1 mouse_genomes_project 11 56723626 56730486 + MGP_C3HHeJ_P0028960 Mfap3 protein_coding protein_coding MGP_C3HHeJ_T0006144.1 MGP_C3HHeJ_G0005123.1 mouse_genomes_project 11 36678385 36705360 - Gm12130 lincRNA lincRNA MGP_C3HHeJ_T0032814.1 MGP_C3HHeJ_G0019061.1 mouse_genomes_project 11 108716364 108779161 - MGP_C3HHeJ_P0032814 Pecam1 protein_coding protein_coding MGP_C3HHeJ_T0032815.1 MGP_C3HHeJ_G0019061.1 mouse_genomes_project 11 108716369 108779371 - MGP_C3HHeJ_P0032815 Pecam1 protein_coding protein_coding MGP_C3HHeJ_T0032816.1 MGP_C3HHeJ_G0019061.1 mouse_genomes_project 11 108723339 108725496 - Pecam1 protein_coding retained_intron MGP_C3HHeJ_T0032817.1 MGP_C3HHeJ_G0019061.1 mouse_genomes_project 11 108723966 108818011 - MGP_C3HHeJ_P0032817 Pecam1 protein_coding protein_coding MGP_C3HHeJ_T0032818.1 MGP_C3HHeJ_G0019061.1 mouse_genomes_project 11 108750866 108753372 - Pecam1 protein_coding retained_intron MGP_C3HHeJ_T0032819.1 MGP_C3HHeJ_G0019061.1 mouse_genomes_project 11 108753107 108779055 - MGP_C3HHeJ_P0032819 Pecam1 protein_coding protein_coding MGP_C3HHeJ_T0031303.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88894034 88900406 + MGP_C3HHeJ_P0031303 Srsf1 protein_coding protein_coding MGP_C3HHeJ_T0031304.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88894380 88898147 + MGP_C3HHeJ_P0031304 Srsf1 protein_coding protein_coding MGP_C3HHeJ_T0031305.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88894387 88895485 + Srsf1 protein_coding retained_intron MGP_C3HHeJ_T0031306.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88894461 88897068 + MGP_C3HHeJ_P0031306 Srsf1 protein_coding protein_coding MGP_C3HHeJ_T0031307.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88895225 88898129 + MGP_C3HHeJ_P0031307 Srsf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031308.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88895247 88897780 + MGP_C3HHeJ_P0031308 Srsf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031309.1 MGP_C3HHeJ_G0018674.1 mouse_genomes_project 11 88896070 88897709 + Srsf1 protein_coding retained_intron MGP_C3HHeJ_T0003073.1 MGP_C3HHeJ_G0002855.1 mouse_genomes_project 11 32323428 32331837 + 4930403D09Rik antisense antisense MGP_C3HHeJ_T0006237.1 MGP_C3HHeJ_G0005195.1 mouse_genomes_project 11 89904747 89909292 - Gm11496 lincRNA lincRNA MGP_C3HHeJ_T0003301.1 MGP_C3HHeJ_G0003042.1 mouse_genomes_project 11 123830441 123831362 + Gm28192 antisense antisense MGP_C3HHeJ_T0009689.1 MGP_C3HHeJ_G0007822.1 mouse_genomes_project 11 123097062 123097200 + miRNA miRNA MGP_C3HHeJ_T0006249.1 MGP_C3HHeJ_G0005205.1 mouse_genomes_project 11 97511941 97513194 + Gm11535 lincRNA lincRNA MGP_C3HHeJ_T0033177.1 MGP_C3HHeJ_G0019139.1 mouse_genomes_project 11 118056768 118058162 - MGP_C3HHeJ_P0033177 Nt5c protein_coding protein_coding MGP_C3HHeJ_T0033178.1 MGP_C3HHeJ_G0019139.1 mouse_genomes_project 11 118056768 118058209 - MGP_C3HHeJ_P0033178 Nt5c protein_coding protein_coding MGP_C3HHeJ_T0033179.1 MGP_C3HHeJ_G0019139.1 mouse_genomes_project 11 118056986 118058198 - Nt5c protein_coding retained_intron MGP_C3HHeJ_T0033180.1 MGP_C3HHeJ_G0019139.1 mouse_genomes_project 11 118057048 118057551 - Nt5c protein_coding retained_intron MGP_C3HHeJ_T0033181.1 MGP_C3HHeJ_G0019139.1 mouse_genomes_project 11 118057119 118057720 - Nt5c protein_coding retained_intron MGP_C3HHeJ_T0012607.1 MGP_C3HHeJ_G0010711.1 mouse_genomes_project 11 99518494 99518650 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031498.1 MGP_C3HHeJ_G0018720.1 mouse_genomes_project 11 95854989 95861883 + MGP_C3HHeJ_P0031498 Mrpl27 protein_coding protein_coding MGP_C3HHeJ_T0031499.1 MGP_C3HHeJ_G0018720.1 mouse_genomes_project 11 95854998 95861712 + Mrpl27 protein_coding processed_transcript MGP_C3HHeJ_T0031500.1 MGP_C3HHeJ_G0018720.1 mouse_genomes_project 11 95855233 95860691 + Mrpl27 protein_coding processed_transcript MGP_C3HHeJ_T0031501.1 MGP_C3HHeJ_G0018720.1 mouse_genomes_project 11 95855253 95860787 + Mrpl27 protein_coding processed_transcript MGP_C3HHeJ_T0029041.1 MGP_C3HHeJ_G0018130.1 mouse_genomes_project 11 58152720 58153563 + MGP_C3HHeJ_P0029041 protein_coding protein_coding MGP_C3HHeJ_T0003048.1 MGP_C3HHeJ_G0002837.1 mouse_genomes_project 11 3485528 3504207 + Gm11973 antisense antisense MGP_C3HHeJ_T0003049.1 MGP_C3HHeJ_G0002837.1 mouse_genomes_project 11 3485568 3507645 + Gm11973 antisense antisense MGP_C3HHeJ_T0003050.1 MGP_C3HHeJ_G0002837.1 mouse_genomes_project 11 3485580 3507645 + Gm11973 antisense antisense MGP_C3HHeJ_T0029026.1 MGP_C3HHeJ_G0018118.1 mouse_genomes_project 11 57913382 57925225 + MGP_C3HHeJ_P0029026 Trim58 protein_coding protein_coding MGP_C3HHeJ_T0028843.1 MGP_C3HHeJ_G0018061.1 mouse_genomes_project 11 53143299 53157302 - MGP_C3HHeJ_P0028843 Pdlim4 protein_coding protein_coding MGP_C3HHeJ_T0028844.1 MGP_C3HHeJ_G0018061.1 mouse_genomes_project 11 53144292 53153169 - MGP_C3HHeJ_P0028844 Pdlim4 protein_coding protein_coding MGP_C3HHeJ_T0028845.1 MGP_C3HHeJ_G0018061.1 mouse_genomes_project 11 53147323 53157361 - Pdlim4 protein_coding retained_intron MGP_C3HHeJ_T0028846.1 MGP_C3HHeJ_G0018061.1 mouse_genomes_project 11 53152095 53152941 - Pdlim4 protein_coding processed_transcript MGP_C3HHeJ_T0100026.1 MGP_C3HHeJ_G0038220.1 mouse_genomes_project 11 71823219 71823350 - Gm22927 snoRNA snoRNA MGP_C3HHeJ_T0099984.1 MGP_C3HHeJ_G0038178.1 mouse_genomes_project 11 671846 671945 + Gm24013 snoRNA snoRNA MGP_C3HHeJ_T0100004.1 MGP_C3HHeJ_G0038198.1 mouse_genomes_project 11 27634681 27634822 + Gm22588 snoRNA snoRNA MGP_C3HHeJ_T0003234.1 MGP_C3HHeJ_G0002986.1 mouse_genomes_project 11 103781310 103789465 + 4930417O22Rik antisense antisense MGP_C3HHeJ_T0006305.1 MGP_C3HHeJ_G0005247.1 mouse_genomes_project 11 123323123 123325367 - Gm16755 lincRNA lincRNA MGP_C3HHeJ_T0029020.1 MGP_C3HHeJ_G0018115.1 mouse_genomes_project 11 57870079 57871201 + MGP_C3HHeJ_P0029020 Olfr324 protein_coding protein_coding MGP_C3HHeJ_T0098003.1 MGP_C3HHeJ_G0036215.1 mouse_genomes_project 11 118951109 118951225 - n-R5s74 rRNA rRNA MGP_C3HHeJ_T0030464.1 MGP_C3HHeJ_G0018471.1 mouse_genomes_project 11 75747665 75789975 + MGP_C3HHeJ_P0030464 Pitpna protein_coding protein_coding MGP_C3HHeJ_T0030465.1 MGP_C3HHeJ_G0018471.1 mouse_genomes_project 11 75747676 75789949 + MGP_C3HHeJ_P0030465 Pitpna protein_coding protein_coding MGP_C3HHeJ_T0030466.1 MGP_C3HHeJ_G0018471.1 mouse_genomes_project 11 75747687 75787901 + MGP_C3HHeJ_P0030466 Pitpna protein_coding protein_coding MGP_C3HHeJ_T0030467.1 MGP_C3HHeJ_G0018471.1 mouse_genomes_project 11 75747727 75758436 + Pitpna protein_coding retained_intron MGP_C3HHeJ_T0030468.1 MGP_C3HHeJ_G0018471.1 mouse_genomes_project 11 75747727 75787604 + MGP_C3HHeJ_P0030468 Pitpna protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030469.1 MGP_C3HHeJ_G0018471.1 mouse_genomes_project 11 75781674 75787477 + Pitpna protein_coding processed_transcript MGP_C3HHeJ_T0012343.1 MGP_C3HHeJ_G0010447.1 mouse_genomes_project 11 338838 339314 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030803.1 MGP_C3HHeJ_G0018543.1 mouse_genomes_project 11 79087816 79089040 - MGP_C3HHeJ_P0030803 Fam58b protein_coding protein_coding MGP_C3HHeJ_T0003165.1 MGP_C3HHeJ_G0002934.1 mouse_genomes_project 11 79372234 79380042 + Gm11201 antisense antisense MGP_C3HHeJ_T0028548.1 MGP_C3HHeJ_G0017986.1 mouse_genomes_project 11 48424622 48426131 + MGP_C3HHeJ_P0028548 Scgb3a1 protein_coding protein_coding MGP_C3HHeJ_T0028549.1 MGP_C3HHeJ_G0017986.1 mouse_genomes_project 11 48424622 48426131 + MGP_C3HHeJ_P0028549 Scgb3a1 protein_coding protein_coding MGP_C3HHeJ_T0012374.1 MGP_C3HHeJ_G0010478.1 mouse_genomes_project 11 11458423 11458802 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030330.1 MGP_C3HHeJ_G0018433.1 mouse_genomes_project 11 74040275 74041366 + MGP_C3HHeJ_P0030330 Olfr397 protein_coding protein_coding MGP_C3HHeJ_T0031216.1 MGP_C3HHeJ_G0018655.1 mouse_genomes_project 11 87868224 87965267 + MGP_C3HHeJ_P0031216 Trim37 protein_coding protein_coding MGP_C3HHeJ_T0031217.1 MGP_C3HHeJ_G0018655.1 mouse_genomes_project 11 87868452 87890990 + MGP_C3HHeJ_P0031217 Trim37 protein_coding protein_coding MGP_C3HHeJ_T0031218.1 MGP_C3HHeJ_G0018655.1 mouse_genomes_project 11 87928642 87953276 + Trim37 protein_coding retained_intron MGP_C3HHeJ_T0031219.1 MGP_C3HHeJ_G0018655.1 mouse_genomes_project 11 87933069 87962842 + MGP_C3HHeJ_P0031219 Trim37 protein_coding protein_coding MGP_C3HHeJ_T0009583.1 MGP_C3HHeJ_G0007716.1 mouse_genomes_project 11 41746372 41746437 - Mir146 miRNA miRNA MGP_C3HHeJ_T0032408.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104029446 104066284 - MGP_C3HHeJ_P0032408 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032409.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030758 104066242 - MGP_C3HHeJ_P0032409 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032410.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030761 104032200 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032411.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030763 104032883 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032412.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030763 104055049 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032413.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030763 104031573 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032414.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030763 104066257 - MGP_C3HHeJ_P0032414 Hdac5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032415.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030763 104031583 - MGP_C3HHeJ_P0032415 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032416.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030765 104066284 - MGP_C3HHeJ_P0032416 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032417.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104030765 104066254 - MGP_C3HHeJ_P0032417 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032418.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104031251 104033094 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032419.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104031695 104033910 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032420.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104033693 104034508 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032421.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104033978 104035372 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032422.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104034404 104035831 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032423.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104040904 104066260 - MGP_C3HHeJ_P0032423 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032424.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104041645 104055048 - MGP_C3HHeJ_P0032424 Hdac5 protein_coding protein_coding MGP_C3HHeJ_T0032425.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104042021 104055049 - Hdac5 protein_coding retained_intron MGP_C3HHeJ_T0032426.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104054830 104066251 - Hdac5 protein_coding processed_transcript MGP_C3HHeJ_T0032427.1 MGP_C3HHeJ_G0018977.1 mouse_genomes_project 11 104055272 104066264 - Hdac5 protein_coding processed_transcript MGP_C3HHeJ_T0100038.1 MGP_C3HHeJ_G0038232.1 mouse_genomes_project 11 83876442 83876539 + Snord7 snoRNA snoRNA MGP_C3HHeJ_T0027880.1 MGP_C3HHeJ_G0017809.1 mouse_genomes_project 11 14371858 14376985 + MGP_C3HHeJ_P0027880 Cnrip1 protein_coding protein_coding MGP_C3HHeJ_T0027881.1 MGP_C3HHeJ_G0017809.1 mouse_genomes_project 11 14372075 14376221 + Cnrip1 protein_coding retained_intron MGP_C3HHeJ_T0027882.1 MGP_C3HHeJ_G0017809.1 mouse_genomes_project 11 14372090 14412298 + MGP_C3HHeJ_P0027882 Cnrip1 protein_coding protein_coding MGP_C3HHeJ_T0003180.1 MGP_C3HHeJ_G0002946.1 mouse_genomes_project 11 86410242 86427087 - Bcas3os1 antisense antisense MGP_C3HHeJ_T0003181.1 MGP_C3HHeJ_G0002946.1 mouse_genomes_project 11 86411773 86427087 - Bcas3os1 antisense antisense MGP_C3HHeJ_T0011197.1 MGP_C3HHeJ_G0009330.1 mouse_genomes_project 11 522203 522380 - Gm27624 misc_RNA misc_RNA MGP_C3HHeJ_T0030660.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78222654 78271922 + MGP_C3HHeJ_P0030660 Sez6 protein_coding protein_coding MGP_C3HHeJ_T0030661.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78222693 78271922 + Sez6 protein_coding retained_intron MGP_C3HHeJ_T0030662.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78222771 78255628 + Sez6 protein_coding retained_intron MGP_C3HHeJ_T0030663.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78222866 78271914 + MGP_C3HHeJ_P0030663 Sez6 protein_coding protein_coding MGP_C3HHeJ_T0030664.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78222893 78270935 + Sez6 protein_coding retained_intron MGP_C3HHeJ_T0030665.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78242980 78246414 + Sez6 protein_coding processed_transcript MGP_C3HHeJ_T0030666.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78245504 78271922 + MGP_C3HHeJ_P0030666 Sez6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030667.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78261872 78267363 + MGP_C3HHeJ_P0030667 Sez6 protein_coding protein_coding MGP_C3HHeJ_T0030668.1 MGP_C3HHeJ_G0018511.1 mouse_genomes_project 11 78266047 78267249 + Sez6 protein_coding retained_intron MGP_C3HHeJ_T0031582.1 MGP_C3HHeJ_G0018744.1 mouse_genomes_project 11 97129219 97135056 + MGP_C3HHeJ_P0031582 Phospho1 protein_coding protein_coding MGP_C3HHeJ_T0031583.1 MGP_C3HHeJ_G0018744.1 mouse_genomes_project 11 97129220 97136501 + MGP_C3HHeJ_P0031583 Phospho1 protein_coding protein_coding MGP_C3HHeJ_T0031585.1 MGP_C3HHeJ_G0018744.1 mouse_genomes_project 11 97135117 97135947 + MGP_C3HHeJ_P0031585 Phospho1 protein_coding protein_coding MGP_C3HHeJ_T0098752.1 MGP_C3HHeJ_G0036946.1 mouse_genomes_project 11 534081 534210 - Gm26393 snRNA snRNA MGP_C3HHeJ_T0009615.1 MGP_C3HHeJ_G0007748.1 mouse_genomes_project 11 69897051 69897140 + Mir324 miRNA miRNA MGP_C3HHeJ_T0031042.1 MGP_C3HHeJ_G0018616.1 mouse_genomes_project 11 84474031 84529335 + MGP_C3HHeJ_P0031042 Hnf1b protein_coding protein_coding MGP_C3HHeJ_T0031043.1 MGP_C3HHeJ_G0018616.1 mouse_genomes_project 11 84474206 84528450 + MGP_C3HHeJ_P0031043 Hnf1b protein_coding protein_coding MGP_C3HHeJ_T0031044.1 MGP_C3HHeJ_G0018616.1 mouse_genomes_project 11 84475399 84487397 + MGP_C3HHeJ_P0031044 Hnf1b protein_coding protein_coding MGP_C3HHeJ_T0032849.1 MGP_C3HHeJ_G0019066.1 mouse_genomes_project 11 108890492 108994008 - MGP_C3HHeJ_P0032849 Smurf2 protein_coding protein_coding MGP_C3HHeJ_T0032850.1 MGP_C3HHeJ_G0019066.1 mouse_genomes_project 11 108892451 108993568 - Smurf2 protein_coding processed_transcript MGP_C3HHeJ_T0032851.1 MGP_C3HHeJ_G0019066.1 mouse_genomes_project 11 108892451 108993763 - MGP_C3HHeJ_P0032851 Smurf2 protein_coding protein_coding MGP_C3HHeJ_T0032852.1 MGP_C3HHeJ_G0019066.1 mouse_genomes_project 11 108893039 108993652 - MGP_C3HHeJ_P0032852 Smurf2 protein_coding protein_coding MGP_C3HHeJ_T0032853.1 MGP_C3HHeJ_G0019066.1 mouse_genomes_project 11 108894860 108899149 - Smurf2 protein_coding processed_transcript MGP_C3HHeJ_T0032854.1 MGP_C3HHeJ_G0019066.1 mouse_genomes_project 11 108900730 108909445 - Smurf2 protein_coding processed_transcript MGP_C3HHeJ_T0003149.1 MGP_C3HHeJ_G0002920.1 mouse_genomes_project 11 68867300 68870060 - 9330160F10Rik antisense antisense MGP_C3HHeJ_T0033528.1 MGP_C3HHeJ_G0019200.1 mouse_genomes_project 11 120497418 120512277 + MGP_C3HHeJ_P0033528 6030468B19Rik protein_coding protein_coding MGP_C3HHeJ_T0030977.1 MGP_C3HHeJ_G0018590.1 mouse_genomes_project 11 83463928 83464750 + Slfn5 protein_coding processed_transcript MGP_C3HHeJ_T0030978.1 MGP_C3HHeJ_G0018590.1 mouse_genomes_project 11 83464674 83472566 + MGP_C3HHeJ_P0030978 Slfn5 protein_coding protein_coding MGP_C3HHeJ_T0030979.1 MGP_C3HHeJ_G0018590.1 mouse_genomes_project 11 83464681 83475500 + MGP_C3HHeJ_P0030979 Slfn5 protein_coding protein_coding MGP_C3HHeJ_T0030980.1 MGP_C3HHeJ_G0018590.1 mouse_genomes_project 11 83467228 83474460 + MGP_C3HHeJ_P0030980 Slfn5 protein_coding protein_coding MGP_C3HHeJ_T0000811.1 MGP_C3HHeJ_G0000752.1 mouse_genomes_project 11 16244002 16247170 - TEC TEC MGP_C3HHeJ_T0017061.1 MGP_C3HHeJ_G0014979.1 mouse_genomes_project 11 116646087 116647031 + 1700092K14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0031432.1 MGP_C3HHeJ_G0018707.1 mouse_genomes_project 11 95468144 95472328 + MGP_C3HHeJ_P0031432 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031433.1 MGP_C3HHeJ_G0018707.1 mouse_genomes_project 11 95468177 95472328 + MGP_C3HHeJ_P0031433 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031434.1 MGP_C3HHeJ_G0018707.1 mouse_genomes_project 11 95470999 95472328 + MGP_C3HHeJ_P0031434 protein_coding protein_coding MGP_C3HHeJ_T0003297.1 MGP_C3HHeJ_G0003038.1 mouse_genomes_project 11 123489533 123499791 + Myadml2os antisense antisense MGP_C3HHeJ_T0029112.1 MGP_C3HHeJ_G0018155.1 mouse_genomes_project 11 58921469 58922588 - MGP_C3HHeJ_P0029112 Olfr222 protein_coding protein_coding MGP_C3HHeJ_T0097991.1 MGP_C3HHeJ_G0036203.1 mouse_genomes_project 11 49603740 49603853 + Gm23392 rRNA rRNA MGP_C3HHeJ_T0099983.1 MGP_C3HHeJ_G0038177.1 mouse_genomes_project 11 342694 342811 - Gm24439 snoRNA snoRNA MGP_C3HHeJ_T0033129.1 MGP_C3HHeJ_G0019130.1 mouse_genomes_project 11 117897313 117909450 + MGP_C3HHeJ_P0033129 Otop3 protein_coding protein_coding MGP_C3HHeJ_T0033130.1 MGP_C3HHeJ_G0019130.1 mouse_genomes_project 11 117897316 117909449 + MGP_C3HHeJ_P0033130 Otop3 protein_coding protein_coding MGP_C3HHeJ_T0003248.1 MGP_C3HHeJ_G0002999.1 mouse_genomes_project 11 108087580 108088282 - Gm11646 antisense antisense MGP_C3HHeJ_T0098758.1 MGP_C3HHeJ_G0036952.1 mouse_genomes_project 11 16111956 16112058 + Gm23093 snRNA snRNA MGP_C3HHeJ_T0029037.1 MGP_C3HHeJ_G0018127.1 mouse_genomes_project 11 58086305 58098627 - MGP_C3HHeJ_P0029037 Fam183b protein_coding protein_coding MGP_C3HHeJ_T0029038.1 MGP_C3HHeJ_G0018127.1 mouse_genomes_project 11 58086319 58098627 - MGP_C3HHeJ_P0029038 Fam183b protein_coding protein_coding MGP_C3HHeJ_T0032563.1 MGP_C3HHeJ_G0019001.1 mouse_genomes_project 11 104808053 104829797 - MGP_C3HHeJ_P0032563 Kif18b protein_coding protein_coding MGP_C3HHeJ_T0032564.1 MGP_C3HHeJ_G0019001.1 mouse_genomes_project 11 104820126 104829761 - Kif18b protein_coding processed_transcript MGP_C3HHeJ_T0030099.1 MGP_C3HHeJ_G0018368.1 mouse_genomes_project 11 70705355 70713998 + MGP_C3HHeJ_P0030099 Zfp3 protein_coding protein_coding MGP_C3HHeJ_T0029225.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60264489 60291733 - MGP_C3HHeJ_P0029225 Shmt1 protein_coding protein_coding MGP_C3HHeJ_T0029226.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60265285 60278178 - Shmt1 protein_coding processed_transcript MGP_C3HHeJ_T0029227.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60265528 60287410 - MGP_C3HHeJ_P0029227 Shmt1 protein_coding protein_coding MGP_C3HHeJ_T0029228.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60265528 60287410 - MGP_C3HHeJ_P0029228 Shmt1 protein_coding protein_coding MGP_C3HHeJ_T0029229.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60265528 60287410 - MGP_C3HHeJ_P0029229 Shmt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029230.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60265632 60272340 - Shmt1 protein_coding retained_intron MGP_C3HHeJ_T0029231.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60265980 60270684 - Shmt1 protein_coding retained_intron MGP_C3HHeJ_T0029232.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60270459 60276628 - Shmt1 protein_coding retained_intron MGP_C3HHeJ_T0029233.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60276019 60291559 - Shmt1 protein_coding retained_intron MGP_C3HHeJ_T0029234.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60277426 60281524 - Shmt1 protein_coding processed_transcript MGP_C3HHeJ_T0029235.1 MGP_C3HHeJ_G0018179.1 mouse_genomes_project 11 60283725 60292253 - Shmt1 protein_coding processed_transcript MGP_C3HHeJ_T0016955.1 MGP_C3HHeJ_G0014924.1 mouse_genomes_project 11 28588305 28595244 + Gm12100 processed_transcript processed_transcript MGP_C3HHeJ_T0029743.1 MGP_C3HHeJ_G0018293.1 mouse_genomes_project 11 69458261 69461363 - MGP_C3HHeJ_P0029743 Shbg protein_coding protein_coding MGP_C3HHeJ_T0029744.1 MGP_C3HHeJ_G0018293.1 mouse_genomes_project 11 69459105 69460398 - Shbg protein_coding processed_transcript MGP_C3HHeJ_T0027570.1 MGP_C3HHeJ_G0017741.1 mouse_genomes_project 11 1618521 1654404 + MGP_C3HHeJ_P0027570 Zmat5 protein_coding protein_coding MGP_C3HHeJ_T0027571.1 MGP_C3HHeJ_G0017741.1 mouse_genomes_project 11 1618551 1654130 + Zmat5 protein_coding processed_transcript MGP_C3HHeJ_T0027572.1 MGP_C3HHeJ_G0017741.1 mouse_genomes_project 11 1645356 1649286 + Zmat5 protein_coding processed_transcript MGP_C3HHeJ_T0006226.1 MGP_C3HHeJ_G0005188.1 mouse_genomes_project 11 87813204 87813906 - Gm11479 lincRNA lincRNA MGP_C3HHeJ_T0030799.1 MGP_C3HHeJ_G0018542.1 mouse_genomes_project 11 78898047 79030513 - MGP_C3HHeJ_P0030799 Nlk protein_coding protein_coding MGP_C3HHeJ_T0030800.1 MGP_C3HHeJ_G0018542.1 mouse_genomes_project 11 78898281 78900342 - Nlk protein_coding processed_transcript MGP_C3HHeJ_T0030801.1 MGP_C3HHeJ_G0018542.1 mouse_genomes_project 11 78898293 78903825 - MGP_C3HHeJ_P0030801 Nlk protein_coding protein_coding MGP_C3HHeJ_T0030802.1 MGP_C3HHeJ_G0018542.1 mouse_genomes_project 11 78950727 79029634 - Nlk protein_coding retained_intron MGP_C3HHeJ_T0032365.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103828940 103855969 - Mpp3 protein_coding processed_transcript MGP_C3HHeJ_T0032366.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103828940 103855125 - MGP_C3HHeJ_P0032366 Mpp3 protein_coding protein_coding MGP_C3HHeJ_T0032367.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103828940 103857516 - MGP_C3HHeJ_P0032367 Mpp3 protein_coding protein_coding MGP_C3HHeJ_T0032368.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103828940 103855990 - MGP_C3HHeJ_P0032368 Mpp3 protein_coding protein_coding MGP_C3HHeJ_T0032369.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103837765 103839547 - Mpp3 protein_coding retained_intron MGP_C3HHeJ_T0032370.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103846503 103855972 - MGP_C3HHeJ_P0032370 Mpp3 protein_coding protein_coding MGP_C3HHeJ_T0032371.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103850257 103855969 - Mpp3 protein_coding processed_transcript MGP_C3HHeJ_T0032372.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103852468 103854888 - Mpp3 protein_coding processed_transcript MGP_C3HHeJ_T0032373.1 MGP_C3HHeJ_G0018968.1 mouse_genomes_project 11 103854417 103855790 - Mpp3 protein_coding processed_transcript MGP_C3HHeJ_T0031867.1 MGP_C3HHeJ_G0018816.1 mouse_genomes_project 11 99925552 99931290 + MGP_C3HHeJ_P0031867 Grb7 protein_coding protein_coding MGP_C3HHeJ_T0031868.1 MGP_C3HHeJ_G0018816.1 mouse_genomes_project 11 99925992 99935220 + MGP_C3HHeJ_P0031868 Grb7 protein_coding protein_coding MGP_C3HHeJ_T0031869.1 MGP_C3HHeJ_G0018816.1 mouse_genomes_project 11 99926202 99935220 + Grb7 protein_coding retained_intron MGP_C3HHeJ_T0031870.1 MGP_C3HHeJ_G0018816.1 mouse_genomes_project 11 99926222 99935220 + Grb7 protein_coding retained_intron MGP_C3HHeJ_T0031871.1 MGP_C3HHeJ_G0018816.1 mouse_genomes_project 11 99931713 99933672 + Grb7 protein_coding retained_intron MGP_C3HHeJ_T0031872.1 MGP_C3HHeJ_G0018816.1 mouse_genomes_project 11 99933633 99934972 + Grb7 protein_coding retained_intron MGP_C3HHeJ_T0029346.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61496558 61661945 + Specc1 protein_coding retained_intron MGP_C3HHeJ_T0029347.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61496558 61681202 + MGP_C3HHeJ_P0029347 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029348.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61496574 61681654 + MGP_C3HHeJ_P0029348 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029349.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61496605 61587572 + Specc1 protein_coding retained_intron MGP_C3HHeJ_T0029350.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61496610 61767428 + MGP_C3HHeJ_P0029350 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029351.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61516493 61615783 + Specc1 protein_coding processed_transcript MGP_C3HHeJ_T0029352.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61546495 61681202 + MGP_C3HHeJ_P0029352 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029353.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61560796 61684857 + MGP_C3HHeJ_P0029353 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029354.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61560812 61767957 + MGP_C3HHeJ_P0029354 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029355.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61571146 61769751 + MGP_C3HHeJ_P0029355 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029356.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61571169 61771635 + MGP_C3HHeJ_P0029356 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029357.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61619070 61771627 + MGP_C3HHeJ_P0029357 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029358.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61619074 61767577 + MGP_C3HHeJ_P0029358 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029359.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61619120 61620395 + Specc1 protein_coding retained_intron MGP_C3HHeJ_T0029360.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61619134 61681215 + MGP_C3HHeJ_P0029360 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029361.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61619166 61681653 + MGP_C3HHeJ_P0029361 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029362.1 MGP_C3HHeJ_G0018202.1 mouse_genomes_project 11 61619172 61771635 + MGP_C3HHeJ_P0029362 Specc1 protein_coding protein_coding MGP_C3HHeJ_T0029425.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62336631 62371649 - Zfp286 protein_coding processed_transcript MGP_C3HHeJ_T0029426.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62361078 62372131 - MGP_C3HHeJ_P0029426 Zfp286 protein_coding protein_coding MGP_C3HHeJ_T0029427.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62362296 62372092 - MGP_C3HHeJ_P0029427 Zfp286 protein_coding protein_coding MGP_C3HHeJ_T0029428.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62363421 62372086 - Zfp286 protein_coding processed_transcript MGP_C3HHeJ_T0029429.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62363430 62366841 - Zfp286 protein_coding processed_transcript MGP_C3HHeJ_T0029430.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62366205 62372078 - Zfp286 protein_coding processed_transcript MGP_C3HHeJ_T0029431.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62366205 62372055 - Zfp286 protein_coding processed_transcript MGP_C3HHeJ_T0029432.1 MGP_C3HHeJ_G0018215.1 mouse_genomes_project 11 62370243 62372092 - Zfp286 protein_coding processed_transcript MGP_C3HHeJ_T0029722.1 MGP_C3HHeJ_G0018287.1 mouse_genomes_project 11 69228510 69244945 - MGP_C3HHeJ_P0029722 Kdm6b protein_coding protein_coding MGP_C3HHeJ_T0029723.1 MGP_C3HHeJ_G0018287.1 mouse_genomes_project 11 69234587 69235525 - Kdm6b protein_coding processed_transcript MGP_C3HHeJ_T0031952.1 MGP_C3HHeJ_G0018834.1 mouse_genomes_project 11 100507194 100508031 - MGP_C3HHeJ_P0031952 Gjd3 protein_coding protein_coding MGP_C3HHeJ_T0098793.1 MGP_C3HHeJ_G0036987.1 mouse_genomes_project 11 79989799 79989903 + Gm23293 snRNA snRNA MGP_C3HHeJ_T0029403.1 MGP_C3HHeJ_G0018209.1 mouse_genomes_project 11 62123138 62126187 + MGP_C3HHeJ_P0029403 protein_coding protein_coding MGP_C3HHeJ_T0029404.1 MGP_C3HHeJ_G0018209.1 mouse_genomes_project 11 62123522 62125475 + MGP_C3HHeJ_P0029404 protein_coding protein_coding MGP_C3HHeJ_T0012407.1 MGP_C3HHeJ_G0010511.1 mouse_genomes_project 11 18910454 18910667 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028208.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30146019 30190344 - MGP_C3HHeJ_P0028208 Nprl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028213.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30151654 30176782 - Nprl3 protein_coding processed_transcript MGP_C3HHeJ_T0028214.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30151654 30190344 - MGP_C3HHeJ_P0028214 Nprl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028215.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30152354 30190362 - MGP_C3HHeJ_P0028215 Nprl3 protein_coding protein_coding MGP_C3HHeJ_T0028216.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30152445 30190313 - MGP_C3HHeJ_P0028216 Nprl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028217.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30153326 30154786 - Nprl3 protein_coding retained_intron MGP_C3HHeJ_T0028218.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30153334 30190284 - MGP_C3HHeJ_P0028218 Nprl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028219.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30153342 30190202 - MGP_C3HHeJ_P0028219 Nprl3 protein_coding protein_coding MGP_C3HHeJ_T0028220.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30157231 30160326 - Nprl3 protein_coding retained_intron MGP_C3HHeJ_T0028221.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30157277 30158421 - Nprl3 protein_coding retained_intron MGP_C3HHeJ_T0028222.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30160184 30174428 - Nprl3 protein_coding retained_intron MGP_C3HHeJ_T0028223.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30160247 30190313 - MGP_C3HHeJ_P0028223 Nprl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028224.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30162045 30170547 - Nprl3 protein_coding processed_transcript MGP_C3HHeJ_T0028225.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30168147 30170647 - Nprl3 protein_coding processed_transcript MGP_C3HHeJ_T0028226.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30170531 30190270 - MGP_C3HHeJ_P0028226 Nprl3 protein_coding protein_coding MGP_C3HHeJ_T0028227.1 MGP_C3HHeJ_G0017884.1 mouse_genomes_project 11 30183927 30190206 - Nprl3 protein_coding processed_transcript MGP_C3HHeJ_T0030064.1 MGP_C3HHeJ_G0018362.1 mouse_genomes_project 11 70582345 70585137 - MGP_C3HHeJ_P0030064 Pfn1 protein_coding protein_coding MGP_C3HHeJ_T0030065.1 MGP_C3HHeJ_G0018362.1 mouse_genomes_project 11 70582431 70585114 - MGP_C3HHeJ_P0030065 Pfn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030066.1 MGP_C3HHeJ_G0018362.1 mouse_genomes_project 11 70583104 70585101 - Pfn1 protein_coding retained_intron MGP_C3HHeJ_T0030067.1 MGP_C3HHeJ_G0018362.1 mouse_genomes_project 11 70583114 70585091 - MGP_C3HHeJ_P0030067 Pfn1 protein_coding protein_coding MGP_C3HHeJ_T0028524.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47931939 47950611 + MGP_C3HHeJ_P0028524 Mgat1 protein_coding protein_coding MGP_C3HHeJ_T0028525.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47931994 47950616 + MGP_C3HHeJ_P0028525 Mgat1 protein_coding protein_coding MGP_C3HHeJ_T0028526.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47932157 47933209 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028527.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47932315 47933166 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028528.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47932979 47948280 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028529.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47935225 47950584 + MGP_C3HHeJ_P0028529 Mgat1 protein_coding protein_coding MGP_C3HHeJ_T0028530.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47935231 47948411 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028531.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47936705 47939386 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028532.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47938260 47950619 + MGP_C3HHeJ_P0028532 Mgat1 protein_coding protein_coding MGP_C3HHeJ_T0028533.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47938313 47945721 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028534.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47938320 47948280 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028535.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47938338 47948880 + MGP_C3HHeJ_P0028535 Mgat1 protein_coding protein_coding MGP_C3HHeJ_T0028536.1 MGP_C3HHeJ_G0017976.1 mouse_genomes_project 11 47943992 47945583 + Mgat1 protein_coding processed_transcript MGP_C3HHeJ_T0028838.1 MGP_C3HHeJ_G0018058.1 mouse_genomes_project 11 52936139 52969672 - MGP_C3HHeJ_P0028838 Slc22a5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031376.1 MGP_C3HHeJ_G0018695.1 mouse_genomes_project 11 91612045 91620600 + MGP_C3HHeJ_P0031376 Cox11 protein_coding protein_coding MGP_C3HHeJ_T0031377.1 MGP_C3HHeJ_G0018695.1 mouse_genomes_project 11 91612374 91620221 + MGP_C3HHeJ_P0031377 Cox11 protein_coding protein_coding MGP_C3HHeJ_T0029497.1 MGP_C3HHeJ_G0018234.1 mouse_genomes_project 11 66608604 66632973 + MGP_C3HHeJ_P0029497 Pirt protein_coding protein_coding MGP_C3HHeJ_T0012493.1 MGP_C3HHeJ_G0010597.1 mouse_genomes_project 11 54257766 54258009 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011707.1 MGP_C3HHeJ_G0009836.1 mouse_genomes_project 11 74409993 74410964 + MGP_C3HHeJ_P0011707 Olfr409-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0029639.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68855221 68861239 + MGP_C3HHeJ_P0029639 Aurkb protein_coding protein_coding MGP_C3HHeJ_T0029640.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68855226 68861239 + MGP_C3HHeJ_P0029640 Aurkb protein_coding protein_coding MGP_C3HHeJ_T0029641.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68855245 68857793 + Aurkb protein_coding processed_transcript MGP_C3HHeJ_T0029642.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68855264 68857871 + Aurkb protein_coding retained_intron MGP_C3HHeJ_T0029643.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68857551 68858648 + Aurkb protein_coding retained_intron MGP_C3HHeJ_T0029644.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68858102 68858650 + Aurkb protein_coding retained_intron MGP_C3HHeJ_T0029645.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68858143 68860312 + Aurkb protein_coding retained_intron MGP_C3HHeJ_T0029646.1 MGP_C3HHeJ_G0018267.1 mouse_genomes_project 11 68860137 68860714 + Aurkb protein_coding processed_transcript MGP_C3HHeJ_T0031618.1 MGP_C3HHeJ_G0018755.1 mouse_genomes_project 11 97528677 97531809 + MGP_C3HHeJ_P0031618 Hoxb13 protein_coding protein_coding MGP_C3HHeJ_T0032789.1 MGP_C3HHeJ_G0019055.1 mouse_genomes_project 11 108352942 108356364 - MGP_C3HHeJ_P0032789 Cd79b protein_coding protein_coding MGP_C3HHeJ_T0032790.1 MGP_C3HHeJ_G0019055.1 mouse_genomes_project 11 108352945 108356131 - MGP_C3HHeJ_P0032790 Cd79b protein_coding protein_coding MGP_C3HHeJ_T0009575.1 MGP_C3HHeJ_G0007708.1 mouse_genomes_project 11 26524497 26524583 + Mir216b miRNA miRNA MGP_C3HHeJ_T0031472.1 MGP_C3HHeJ_G0018713.1 mouse_genomes_project 11 95690328 95701620 - MGP_C3HHeJ_P0031472 Epn3 protein_coding protein_coding MGP_C3HHeJ_T0031473.1 MGP_C3HHeJ_G0018713.1 mouse_genomes_project 11 95691851 95701555 - Epn3 protein_coding processed_transcript MGP_C3HHeJ_T0031474.1 MGP_C3HHeJ_G0018713.1 mouse_genomes_project 11 95691889 95701500 - MGP_C3HHeJ_P0031474 Epn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031475.1 MGP_C3HHeJ_G0018713.1 mouse_genomes_project 11 95696740 95698992 - Epn3 protein_coding processed_transcript MGP_C3HHeJ_T0031476.1 MGP_C3HHeJ_G0018713.1 mouse_genomes_project 11 95697104 95700766 - Epn3 protein_coding processed_transcript MGP_C3HHeJ_T0009605.1 MGP_C3HHeJ_G0007738.1 mouse_genomes_project 11 64707076 64707175 - Gm25991 miRNA miRNA MGP_C3HHeJ_T0033702.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122809864 122849650 - Aatk protein_coding processed_transcript MGP_C3HHeJ_T0033703.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122809864 122814960 - Aatk protein_coding processed_transcript MGP_C3HHeJ_T0033704.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122809864 122849553 - MGP_C3HHeJ_P0033704 Aatk protein_coding protein_coding MGP_C3HHeJ_T0033705.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122811767 122825579 - MGP_C3HHeJ_P0033705 Aatk protein_coding protein_coding MGP_C3HHeJ_T0033706.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122814946 122819402 - Aatk protein_coding processed_transcript MGP_C3HHeJ_T0033707.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122816237 122819661 - Aatk protein_coding processed_transcript MGP_C3HHeJ_T0033708.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122817889 122819377 - Aatk protein_coding processed_transcript MGP_C3HHeJ_T0033709.1 MGP_C3HHeJ_G0019237.1 mouse_genomes_project 11 122819242 122822671 - Aatk protein_coding processed_transcript MGP_C3HHeJ_T0012655.1 MGP_C3HHeJ_G0010759.1 mouse_genomes_project 11 119143878 119144181 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028209.1 MGP_C3HHeJ_G0017885.1 mouse_genomes_project 11 30146896 30152414 + MGP_C3HHeJ_P0028209 Mpg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028210.1 MGP_C3HHeJ_G0017885.1 mouse_genomes_project 11 30146902 30153092 + MGP_C3HHeJ_P0028210 Mpg protein_coding protein_coding MGP_C3HHeJ_T0028211.1 MGP_C3HHeJ_G0017885.1 mouse_genomes_project 11 30146921 30148789 + Mpg protein_coding retained_intron MGP_C3HHeJ_T0028212.1 MGP_C3HHeJ_G0017885.1 mouse_genomes_project 11 30146930 30151636 + MGP_C3HHeJ_P0028212 Mpg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031198.1 MGP_C3HHeJ_G0018648.1 mouse_genomes_project 11 87435553 87511791 - MGP_C3HHeJ_P0031198 Cltc protein_coding protein_coding MGP_C3HHeJ_T0031199.1 MGP_C3HHeJ_G0018648.1 mouse_genomes_project 11 87435857 87511727 - MGP_C3HHeJ_P0031199 Cltc protein_coding protein_coding MGP_C3HHeJ_T0031200.1 MGP_C3HHeJ_G0018648.1 mouse_genomes_project 11 87436521 87444915 - MGP_C3HHeJ_P0031200 Cltc protein_coding protein_coding MGP_C3HHeJ_T0031201.1 MGP_C3HHeJ_G0018648.1 mouse_genomes_project 11 87442156 87443649 - Cltc protein_coding processed_transcript MGP_C3HHeJ_T0031202.1 MGP_C3HHeJ_G0018648.1 mouse_genomes_project 11 87464778 87468823 - Cltc protein_coding retained_intron MGP_C3HHeJ_T0031203.1 MGP_C3HHeJ_G0018648.1 mouse_genomes_project 11 87466538 87468792 - Cltc protein_coding processed_transcript MGP_C3HHeJ_T0032565.1 MGP_C3HHeJ_G0019002.1 mouse_genomes_project 11 104843942 104851366 - MGP_C3HHeJ_P0032565 C1ql1 protein_coding protein_coding MGP_C3HHeJ_T0009618.1 MGP_C3HHeJ_G0007751.1 mouse_genomes_project 11 70135742 70135836 + Mir195a miRNA miRNA MGP_C3HHeJ_T0003121.1 MGP_C3HHeJ_G0002897.1 mouse_genomes_project 11 60407676 60419803 - Map2k3os antisense antisense MGP_C3HHeJ_T0030621.1 MGP_C3HHeJ_G0018504.1 mouse_genomes_project 11 77775860 77778393 - MGP_C3HHeJ_P0030621 Gm10392 protein_coding protein_coding MGP_C3HHeJ_T0032767.1 MGP_C3HHeJ_G0019049.1 mouse_genomes_project 11 108260832 108292863 + MGP_C3HHeJ_P0032767 Ddx42 protein_coding protein_coding MGP_C3HHeJ_T0032768.1 MGP_C3HHeJ_G0019049.1 mouse_genomes_project 11 108280886 108281895 + Ddx42 protein_coding processed_transcript MGP_C3HHeJ_T0027884.1 MGP_C3HHeJ_G0017811.1 mouse_genomes_project 11 14501259 14543898 + MGP_C3HHeJ_P0027884 Ppp3r1 protein_coding protein_coding MGP_C3HHeJ_T0027886.1 MGP_C3HHeJ_G0017811.1 mouse_genomes_project 11 14536377 14538643 + Ppp3r1 protein_coding processed_transcript MGP_C3HHeJ_T0033863.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123515700 123518489 + Aspscr1 protein_coding retained_intron MGP_C3HHeJ_T0033864.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123515753 123520089 + Aspscr1 protein_coding retained_intron MGP_C3HHeJ_T0033865.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123515790 123550296 + MGP_C3HHeJ_P0033865 Aspscr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033866.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123515796 123560828 + MGP_C3HHeJ_P0033866 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033867.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123515810 123560450 + MGP_C3HHeJ_P0033867 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033868.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123515825 123537127 + MGP_C3HHeJ_P0033868 Aspscr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033869.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123516086 123537230 + MGP_C3HHeJ_P0033869 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033870.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123516101 123537226 + MGP_C3HHeJ_P0033870 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033871.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123516101 123522560 + MGP_C3HHeJ_P0033871 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033872.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123516119 123537186 + MGP_C3HHeJ_P0033872 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033873.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123516131 123534760 + MGP_C3HHeJ_P0033873 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033874.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123520767 123560820 + MGP_C3HHeJ_P0033874 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033875.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123521332 123522552 + MGP_C3HHeJ_P0033875 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033876.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123521445 123537356 + MGP_C3HHeJ_P0033876 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033877.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123534751 123560821 + MGP_C3HHeJ_P0033877 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033878.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123537332 123560821 + MGP_C3HHeJ_P0033878 Aspscr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033879.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123537368 123560619 + MGP_C3HHeJ_P0033879 Aspscr1 protein_coding protein_coding MGP_C3HHeJ_T0033880.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123551245 123560822 + MGP_C3HHeJ_P0033880 Aspscr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033881.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123560035 123560820 + Aspscr1 protein_coding retained_intron MGP_C3HHeJ_T0033882.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123560137 123560825 + Aspscr1 protein_coding retained_intron MGP_C3HHeJ_T0033883.1 MGP_C3HHeJ_G0019270.1 mouse_genomes_project 11 123560235 123560823 + Aspscr1 protein_coding retained_intron MGP_C3HHeJ_T0033846.1 MGP_C3HHeJ_G0019266.1 mouse_genomes_project 11 123465861 123475618 - MGP_C3HHeJ_P0033846 Mafg protein_coding protein_coding MGP_C3HHeJ_T0033847.1 MGP_C3HHeJ_G0019266.1 mouse_genomes_project 11 123469748 123471539 - MGP_C3HHeJ_P0033847 Mafg protein_coding protein_coding MGP_C3HHeJ_T0033848.1 MGP_C3HHeJ_G0019266.1 mouse_genomes_project 11 123469882 123471378 - MGP_C3HHeJ_P0033848 Mafg protein_coding protein_coding MGP_C3HHeJ_T0033849.1 MGP_C3HHeJ_G0019266.1 mouse_genomes_project 11 123469973 123470890 - MGP_C3HHeJ_P0033849 Mafg protein_coding protein_coding MGP_C3HHeJ_T0033850.1 MGP_C3HHeJ_G0019266.1 mouse_genomes_project 11 123471965 123475574 - Mafg protein_coding processed_transcript MGP_C3HHeJ_T0028990.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57578666 57586895 - MGP_C3HHeJ_P0028990 Zfp672 protein_coding protein_coding MGP_C3HHeJ_T0028991.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57578676 57586872 - MGP_C3HHeJ_P0028991 Zfp672 protein_coding protein_coding MGP_C3HHeJ_T0028992.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57578767 57586662 - MGP_C3HHeJ_P0028992 Zfp672 protein_coding protein_coding MGP_C3HHeJ_T0028993.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57580776 57593904 - MGP_C3HHeJ_P0028993 Zfp672 protein_coding protein_coding MGP_C3HHeJ_T0028994.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57580878 57583511 - MGP_C3HHeJ_P0028994 Zfp672 protein_coding protein_coding MGP_C3HHeJ_T0028995.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57583260 57586863 - Zfp672 protein_coding processed_transcript MGP_C3HHeJ_T0028996.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57583294 57586863 - Zfp672 protein_coding processed_transcript MGP_C3HHeJ_T0028997.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57590784 57593912 - Zfp672 protein_coding retained_intron MGP_C3HHeJ_T0028998.1 MGP_C3HHeJ_G0018101.1 mouse_genomes_project 11 57591289 57593912 - MGP_C3HHeJ_P0028998 Zfp672 protein_coding protein_coding MGP_C3HHeJ_T0031467.1 MGP_C3HHeJ_G0018712.1 mouse_genomes_project 11 95679650 95685841 - Spata20 protein_coding processed_transcript MGP_C3HHeJ_T0031468.1 MGP_C3HHeJ_G0018712.1 mouse_genomes_project 11 95679650 95686088 - MGP_C3HHeJ_P0031468 Spata20 protein_coding protein_coding MGP_C3HHeJ_T0031469.1 MGP_C3HHeJ_G0018712.1 mouse_genomes_project 11 95683813 95685152 - Spata20 protein_coding processed_transcript MGP_C3HHeJ_T0031470.1 MGP_C3HHeJ_G0018712.1 mouse_genomes_project 11 95684092 95685839 - Spata20 protein_coding processed_transcript MGP_C3HHeJ_T0031471.1 MGP_C3HHeJ_G0018712.1 mouse_genomes_project 11 95685347 95686913 - Spata20 protein_coding processed_transcript MGP_C3HHeJ_T0012357.1 MGP_C3HHeJ_G0010461.1 mouse_genomes_project 11 3454585 3454905 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009572.1 MGP_C3HHeJ_G0007705.1 mouse_genomes_project 11 21577414 21577519 + Gm44381 miRNA miRNA MGP_C3HHeJ_T0098265.1 MGP_C3HHeJ_G0036477.1 mouse_genomes_project 11 9169835 9169963 - Gm25058 scaRNA scaRNA MGP_C3HHeJ_T0031083.1 MGP_C3HHeJ_G0018625.1 mouse_genomes_project 11 85483910 85490322 - MGP_C3HHeJ_P0031083 Mrm1 protein_coding protein_coding MGP_C3HHeJ_T0031084.1 MGP_C3HHeJ_G0018625.1 mouse_genomes_project 11 85485549 85486197 - Mrm1 protein_coding retained_intron MGP_C3HHeJ_T0031085.1 MGP_C3HHeJ_G0018625.1 mouse_genomes_project 11 85485809 85489541 - Mrm1 protein_coding processed_transcript MGP_C3HHeJ_T0029977.1 MGP_C3HHeJ_G0018343.1 mouse_genomes_project 11 70142159 70155895 - MGP_C3HHeJ_P0029977 Alox12 protein_coding protein_coding MGP_C3HHeJ_T0029978.1 MGP_C3HHeJ_G0018343.1 mouse_genomes_project 11 70149506 70155883 - MGP_C3HHeJ_P0029978 Alox12 protein_coding protein_coding MGP_C3HHeJ_T0098762.1 MGP_C3HHeJ_G0036956.1 mouse_genomes_project 11 21328974 21329119 - Gm23827 snRNA snRNA MGP_C3HHeJ_T0027907.1 MGP_C3HHeJ_G0017818.1 mouse_genomes_project 11 17466785 17518689 - MGP_C3HHeJ_P0027907 Actr2 protein_coding protein_coding MGP_C3HHeJ_T0027908.1 MGP_C3HHeJ_G0017818.1 mouse_genomes_project 11 17483886 17518643 - Actr2 protein_coding processed_transcript MGP_C3HHeJ_T0027909.1 MGP_C3HHeJ_G0017818.1 mouse_genomes_project 11 17506380 17518685 - Actr2 protein_coding retained_intron MGP_C3HHeJ_T0101654.1 MGP_C3HHeJ_G0039620.1 mouse_genomes_project 11 95999796 96000536 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0031570.1 MGP_C3HHeJ_G0018739.1 mouse_genomes_project 11 96799474 96804232 - MGP_C3HHeJ_P0031570 Nxph3 protein_coding protein_coding MGP_C3HHeJ_T0031994.1 MGP_C3HHeJ_G0018851.1 mouse_genomes_project 11 101093524 101099194 - MGP_C3HHeJ_P0031994 Krt40 protein_coding protein_coding MGP_C3HHeJ_T0031995.1 MGP_C3HHeJ_G0018851.1 mouse_genomes_project 11 101093524 101099194 - MGP_C3HHeJ_P0031995 Krt40 protein_coding protein_coding MGP_C3HHeJ_T0003137.1 MGP_C3HHeJ_G0002911.1 mouse_genomes_project 11 63587197 63591012 + 9630013K17Rik antisense antisense MGP_C3HHeJ_T0027800.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6225835 6244874 + MGP_C3HHeJ_P0027800 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027801.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6225839 6244880 + MGP_C3HHeJ_P0027801 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027802.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6225977 6243439 + MGP_C3HHeJ_P0027802 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027803.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6226239 6244877 + MGP_C3HHeJ_P0027803 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027804.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6226280 6242032 + MGP_C3HHeJ_P0027804 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027805.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6226359 6227406 + Upp1 protein_coding retained_intron MGP_C3HHeJ_T0027806.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6226519 6241961 + MGP_C3HHeJ_P0027806 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027807.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6233470 6243459 + MGP_C3HHeJ_P0027807 Upp1 protein_coding protein_coding MGP_C3HHeJ_T0027808.1 MGP_C3HHeJ_G0017794.1 mouse_genomes_project 11 6241724 6244792 + Upp1 protein_coding retained_intron MGP_C3HHeJ_T0011198.1 MGP_C3HHeJ_G0009331.1 mouse_genomes_project 11 522713 522949 - Gm27517 misc_RNA misc_RNA MGP_C3HHeJ_T0003111.1 MGP_C3HHeJ_G0002890.1 mouse_genomes_project 11 58218712 58220472 + Gm12257 antisense antisense MGP_C3HHeJ_T0098779.1 MGP_C3HHeJ_G0036973.1 mouse_genomes_project 11 61475595 61475702 - Gm23721 snRNA snRNA MGP_C3HHeJ_T0006184.1 MGP_C3HHeJ_G0005159.1 mouse_genomes_project 11 66655909 66663729 + lincRNA lincRNA MGP_C3HHeJ_T0006185.1 MGP_C3HHeJ_G0005159.1 mouse_genomes_project 11 66657150 66664232 + lincRNA lincRNA MGP_C3HHeJ_T0031394.1 MGP_C3HHeJ_G0018699.1 mouse_genomes_project 11 95031306 95058493 - Utp18 protein_coding processed_transcript MGP_C3HHeJ_T0031395.1 MGP_C3HHeJ_G0018699.1 mouse_genomes_project 11 95031306 95058493 - MGP_C3HHeJ_P0031395 Utp18 protein_coding protein_coding MGP_C3HHeJ_T0031396.1 MGP_C3HHeJ_G0018699.1 mouse_genomes_project 11 95047422 95048186 - Utp18 protein_coding processed_transcript MGP_C3HHeJ_T0099990.1 MGP_C3HHeJ_G0038184.1 mouse_genomes_project 11 3665142 3665278 - Snora5c snoRNA snoRNA MGP_C3HHeJ_T0003064.1 MGP_C3HHeJ_G0002847.1 mouse_genomes_project 11 21456501 21457430 + Gm12061 antisense antisense MGP_C3HHeJ_T0030557.1 MGP_C3HHeJ_G0018489.1 mouse_genomes_project 11 76896955 76898162 + MGP_C3HHeJ_P0030557 Bhlha9 protein_coding protein_coding MGP_C3HHeJ_T0030868.1 MGP_C3HHeJ_G0018560.1 mouse_genomes_project 11 80553686 80559118 - MGP_C3HHeJ_P0030868 Tefm protein_coding protein_coding MGP_C3HHeJ_T0030869.1 MGP_C3HHeJ_G0018560.1 mouse_genomes_project 11 80553686 80556852 - MGP_C3HHeJ_P0030869 Tefm protein_coding protein_coding MGP_C3HHeJ_T0030870.1 MGP_C3HHeJ_G0018560.1 mouse_genomes_project 11 80554954 80559086 - MGP_C3HHeJ_P0030870 Tefm protein_coding protein_coding MGP_C3HHeJ_T0029114.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59023747 59090139 + protein_coding processed_transcript MGP_C3HHeJ_T0029115.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59024937 59145635 + MGP_C3HHeJ_P0029115 protein_coding protein_coding MGP_C3HHeJ_T0029116.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59024949 59140914 + MGP_C3HHeJ_P0029116 protein_coding protein_coding MGP_C3HHeJ_T0029117.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59024949 59140923 + MGP_C3HHeJ_P0029117 protein_coding protein_coding MGP_C3HHeJ_T0029118.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59024949 59140914 + MGP_C3HHeJ_P0029118 protein_coding protein_coding MGP_C3HHeJ_T0029119.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59090009 59141293 + MGP_C3HHeJ_P0029119 protein_coding protein_coding MGP_C3HHeJ_T0029120.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59103465 59114253 + protein_coding processed_transcript MGP_C3HHeJ_T0029121.1 MGP_C3HHeJ_G0018157.1 mouse_genomes_project 11 59125472 59140914 + MGP_C3HHeJ_P0029121 protein_coding protein_coding MGP_C3HHeJ_T0003187.1 MGP_C3HHeJ_G0002950.1 mouse_genomes_project 11 88597689 88604753 - Gm11505 antisense antisense MGP_C3HHeJ_T0029236.1 MGP_C3HHeJ_G0018180.1 mouse_genomes_project 11 60309790 60340454 + MGP_C3HHeJ_P0029236 Dhrs7b protein_coding protein_coding MGP_C3HHeJ_T0027714.1 MGP_C3HHeJ_G0017771.1 mouse_genomes_project 11 3207495 3226619 - MGP_C3HHeJ_P0027714 Npc1l1 protein_coding protein_coding MGP_C3HHeJ_T0101629.1 MGP_C3HHeJ_G0039595.1 mouse_genomes_project 11 45121970 45122243 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012523.1 MGP_C3HHeJ_G0010627.1 mouse_genomes_project 11 63433630 63434912 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032215.1 MGP_C3HHeJ_G0018937.1 mouse_genomes_project 11 102901911 102904367 - MGP_C3HHeJ_P0032215 Ccr10 protein_coding protein_coding MGP_C3HHeJ_T0032891.1 MGP_C3HHeJ_G0019074.1 mouse_genomes_project 11 109878471 109943846 - MGP_C3HHeJ_P0032891 Cacng4 protein_coding protein_coding MGP_C3HHeJ_T0032892.1 MGP_C3HHeJ_G0019074.1 mouse_genomes_project 11 109881303 109888105 - Cacng4 protein_coding processed_transcript MGP_C3HHeJ_T0031319.1 MGP_C3HHeJ_G0018677.1 mouse_genomes_project 11 89065956 89073047 + MGP_C3HHeJ_P0031319 Mrps23 protein_coding protein_coding MGP_C3HHeJ_T0031320.1 MGP_C3HHeJ_G0018677.1 mouse_genomes_project 11 89065979 89073047 + MGP_C3HHeJ_P0031320 Mrps23 protein_coding protein_coding MGP_C3HHeJ_T0031321.1 MGP_C3HHeJ_G0018677.1 mouse_genomes_project 11 89065992 89072220 + MGP_C3HHeJ_P0031321 Mrps23 protein_coding protein_coding MGP_C3HHeJ_T0031322.1 MGP_C3HHeJ_G0018677.1 mouse_genomes_project 11 89065992 89071759 + MGP_C3HHeJ_P0031322 Mrps23 protein_coding protein_coding MGP_C3HHeJ_T0031323.1 MGP_C3HHeJ_G0018677.1 mouse_genomes_project 11 89066012 89072521 + MGP_C3HHeJ_P0031323 Mrps23 protein_coding protein_coding MGP_C3HHeJ_T0012524.1 MGP_C3HHeJ_G0010628.1 mouse_genomes_project 11 64673358 64673848 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003269.1 MGP_C3HHeJ_G0003016.1 mouse_genomes_project 11 112026400 112032017 + Gm11683 antisense antisense MGP_C3HHeJ_T0032214.1 MGP_C3HHeJ_G0018936.1 mouse_genomes_project 11 102898412 102907199 + Cntnap1 protein_coding processed_transcript MGP_C3HHeJ_T0032216.1 MGP_C3HHeJ_G0018936.1 mouse_genomes_project 11 102904959 102920669 + MGP_C3HHeJ_P0032216 Cntnap1 protein_coding protein_coding MGP_C3HHeJ_T0029405.1 MGP_C3HHeJ_G0018210.1 mouse_genomes_project 11 62148494 62174243 + Trpv2 protein_coding processed_transcript MGP_C3HHeJ_T0029406.1 MGP_C3HHeJ_G0018210.1 mouse_genomes_project 11 62148546 62175439 + MGP_C3HHeJ_P0029406 Trpv2 protein_coding protein_coding MGP_C3HHeJ_T0029407.1 MGP_C3HHeJ_G0018210.1 mouse_genomes_project 11 62149555 62155285 + Trpv2 protein_coding processed_transcript MGP_C3HHeJ_T0029408.1 MGP_C3HHeJ_G0018210.1 mouse_genomes_project 11 62150133 62174243 + MGP_C3HHeJ_P0029408 Trpv2 protein_coding protein_coding MGP_C3HHeJ_T0029409.1 MGP_C3HHeJ_G0018210.1 mouse_genomes_project 11 62155247 62174243 + Trpv2 protein_coding processed_transcript MGP_C3HHeJ_T0006128.1 MGP_C3HHeJ_G0005109.1 mouse_genomes_project 11 26457711 26468950 + 2810471M01Rik lincRNA lincRNA MGP_C3HHeJ_T0098355.1 MGP_C3HHeJ_G0036564.1 mouse_genomes_project 11 121628396 121629360 - Gm11749 sense_intronic sense_intronic MGP_C3HHeJ_T0031066.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84758493 84843284 + MGP_C3HHeJ_P0031066 Acaca protein_coding protein_coding MGP_C3HHeJ_T0031067.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84758521 84761924 + Acaca protein_coding processed_transcript MGP_C3HHeJ_T0031069.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84800788 84865651 + Acaca protein_coding retained_intron MGP_C3HHeJ_T0031070.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84807290 84861299 + MGP_C3HHeJ_P0031070 Acaca protein_coding protein_coding MGP_C3HHeJ_T0031071.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84807290 84843189 + MGP_C3HHeJ_P0031071 Acaca protein_coding protein_coding MGP_C3HHeJ_T0031072.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84807317 84843178 + MGP_C3HHeJ_P0031072 Acaca protein_coding protein_coding MGP_C3HHeJ_T0031073.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84807492 85032253 + MGP_C3HHeJ_P0031073 Acaca protein_coding protein_coding MGP_C3HHeJ_T0031074.1 MGP_C3HHeJ_G0018621.1 mouse_genomes_project 11 84912203 84940317 + MGP_C3HHeJ_P0031074 Acaca protein_coding protein_coding MGP_C3HHeJ_T0003208.1 MGP_C3HHeJ_G0002966.1 mouse_genomes_project 11 97684986 97696621 - Hoxb3os antisense antisense MGP_C3HHeJ_T0003209.1 MGP_C3HHeJ_G0002966.1 mouse_genomes_project 11 97687389 97689832 - Hoxb3os antisense antisense MGP_C3HHeJ_T0030535.1 MGP_C3HHeJ_G0018485.1 mouse_genomes_project 11 76453970 76460884 + MGP_C3HHeJ_P0030535 Rnmtl1 protein_coding protein_coding MGP_C3HHeJ_T0030536.1 MGP_C3HHeJ_G0018485.1 mouse_genomes_project 11 76453991 76455139 + Rnmtl1 protein_coding retained_intron MGP_C3HHeJ_T0030537.1 MGP_C3HHeJ_G0018485.1 mouse_genomes_project 11 76459475 76460772 + Rnmtl1 protein_coding processed_transcript MGP_C3HHeJ_T0029210.1 MGP_C3HHeJ_G0018175.1 mouse_genomes_project 11 60185099 60185704 - Flii protein_coding retained_intron MGP_C3HHeJ_T0029211.1 MGP_C3HHeJ_G0018175.1 mouse_genomes_project 11 60185119 60198242 - MGP_C3HHeJ_P0029211 Flii protein_coding protein_coding MGP_C3HHeJ_T0029212.1 MGP_C3HHeJ_G0018175.1 mouse_genomes_project 11 60190277 60191192 - Flii protein_coding retained_intron MGP_C3HHeJ_T0029213.1 MGP_C3HHeJ_G0018175.1 mouse_genomes_project 11 60195343 60198202 - Flii protein_coding retained_intron MGP_C3HHeJ_T0031220.1 MGP_C3HHeJ_G0018656.1 mouse_genomes_project 11 87972776 88110375 - MGP_C3HHeJ_P0031220 Ppm1e protein_coding protein_coding MGP_C3HHeJ_T0031221.1 MGP_C3HHeJ_G0018656.1 mouse_genomes_project 11 87990233 88109989 - Ppm1e protein_coding processed_transcript MGP_C3HHeJ_T0006273.1 MGP_C3HHeJ_G0005223.1 mouse_genomes_project 11 114442239 114467628 + Gm11680 lincRNA lincRNA MGP_C3HHeJ_T0028820.1 MGP_C3HHeJ_G0018054.1 mouse_genomes_project 11 52763324 52767638 + MGP_C3HHeJ_P0028820 Il5 protein_coding protein_coding MGP_C3HHeJ_T0027415.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 146950 149608 + Patz1 protein_coding processed_transcript MGP_C3HHeJ_T0027416.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 147243 170771 + Patz1 protein_coding processed_transcript MGP_C3HHeJ_T0027417.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 147278 154505 + Patz1 protein_coding processed_transcript MGP_C3HHeJ_T0027418.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 147357 170771 + MGP_C3HHeJ_P0027418 Patz1 protein_coding protein_coding MGP_C3HHeJ_T0027419.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 149408 157118 + MGP_C3HHeJ_P0027419 Patz1 protein_coding protein_coding MGP_C3HHeJ_T0027420.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 149854 170771 + MGP_C3HHeJ_P0027420 Patz1 protein_coding protein_coding MGP_C3HHeJ_T0027421.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 150029 169754 + MGP_C3HHeJ_P0027421 Patz1 protein_coding protein_coding MGP_C3HHeJ_T0027422.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 150874 169830 + Patz1 protein_coding processed_transcript MGP_C3HHeJ_T0027423.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 151610 154084 + Patz1 protein_coding processed_transcript MGP_C3HHeJ_T0027424.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 152283 154311 + Patz1 protein_coding processed_transcript MGP_C3HHeJ_T0027425.1 MGP_C3HHeJ_G0017708.1 mouse_genomes_project 11 159972 169355 + MGP_C3HHeJ_P0027425 Patz1 protein_coding protein_coding MGP_C3HHeJ_T0030767.1 MGP_C3HHeJ_G0018533.1 mouse_genomes_project 11 78786673 78792923 + MGP_C3HHeJ_P0030767 Slc46a1 protein_coding protein_coding MGP_C3HHeJ_T0030768.1 MGP_C3HHeJ_G0018533.1 mouse_genomes_project 11 78786726 78792599 + MGP_C3HHeJ_P0030768 Slc46a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030769.1 MGP_C3HHeJ_G0018533.1 mouse_genomes_project 11 78791202 78793037 + Slc46a1 protein_coding retained_intron MGP_C3HHeJ_T0009602.1 MGP_C3HHeJ_G0007735.1 mouse_genomes_project 11 59699477 59699595 - Gm27711 miRNA miRNA MGP_C3HHeJ_T0097997.1 MGP_C3HHeJ_G0036209.1 mouse_genomes_project 11 84378361 84378471 - Gm22311 rRNA rRNA MGP_C3HHeJ_T0098774.1 MGP_C3HHeJ_G0036968.1 mouse_genomes_project 11 53556927 53557035 + Gm24198 snRNA snRNA MGP_C3HHeJ_T0029871.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69823900 69829537 - Slc2a4 protein_coding retained_intron MGP_C3HHeJ_T0029872.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69824730 69829343 - MGP_C3HHeJ_P0029872 Slc2a4 protein_coding protein_coding MGP_C3HHeJ_T0029873.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69825153 69829526 - MGP_C3HHeJ_P0029873 Slc2a4 protein_coding protein_coding MGP_C3HHeJ_T0029874.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69826630 69829336 - MGP_C3HHeJ_P0029874 Slc2a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029875.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69826630 69829509 - MGP_C3HHeJ_P0029875 Slc2a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029876.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69826924 69829507 - MGP_C3HHeJ_P0029876 Slc2a4 protein_coding protein_coding MGP_C3HHeJ_T0029877.1 MGP_C3HHeJ_G0018324.1 mouse_genomes_project 11 69827430 69829516 - MGP_C3HHeJ_P0029877 Slc2a4 protein_coding protein_coding MGP_C3HHeJ_T0029587.1 MGP_C3HHeJ_G0018258.1 mouse_genomes_project 11 68612115 68646584 - MGP_C3HHeJ_P0029587 Ndel1 protein_coding protein_coding MGP_C3HHeJ_T0029588.1 MGP_C3HHeJ_G0018258.1 mouse_genomes_project 11 68612791 68633344 - Ndel1 protein_coding processed_transcript MGP_C3HHeJ_T0029589.1 MGP_C3HHeJ_G0018258.1 mouse_genomes_project 11 68622132 68667822 - MGP_C3HHeJ_P0029589 Ndel1 protein_coding protein_coding MGP_C3HHeJ_T0029590.1 MGP_C3HHeJ_G0018258.1 mouse_genomes_project 11 68622147 68646490 - MGP_C3HHeJ_P0029590 Ndel1 protein_coding protein_coding MGP_C3HHeJ_T0029591.1 MGP_C3HHeJ_G0018258.1 mouse_genomes_project 11 68629722 68653433 - Ndel1 protein_coding processed_transcript MGP_C3HHeJ_T0029592.1 MGP_C3HHeJ_G0018258.1 mouse_genomes_project 11 68633337 68658433 - Ndel1 protein_coding processed_transcript MGP_C3HHeJ_T0101627.1 MGP_C3HHeJ_G0039593.1 mouse_genomes_project 11 5088163 5089821 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0028255.1 MGP_C3HHeJ_G0017898.1 mouse_genomes_project 11 31188926 31502677 - MGP_C3HHeJ_P0028255 Ranbp17 protein_coding protein_coding MGP_C3HHeJ_T0028256.1 MGP_C3HHeJ_G0017898.1 mouse_genomes_project 11 31190533 31318453 - MGP_C3HHeJ_P0028256 Ranbp17 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028259.1 MGP_C3HHeJ_G0017898.1 mouse_genomes_project 11 31273813 31502573 - MGP_C3HHeJ_P0028259 Ranbp17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028260.1 MGP_C3HHeJ_G0017898.1 mouse_genomes_project 11 31280184 31308176 - Ranbp17 protein_coding processed_transcript MGP_C3HHeJ_T0028261.1 MGP_C3HHeJ_G0017898.1 mouse_genomes_project 11 31458162 31502561 - MGP_C3HHeJ_P0028261 Ranbp17 protein_coding protein_coding MGP_C3HHeJ_T0028262.1 MGP_C3HHeJ_G0017898.1 mouse_genomes_project 11 31473114 31502025 - MGP_C3HHeJ_P0028262 Ranbp17 protein_coding protein_coding MGP_C3HHeJ_T0003217.1 MGP_C3HHeJ_G0002974.1 mouse_genomes_project 11 100089940 100090723 + antisense antisense MGP_C3HHeJ_T0033604.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121243514 121672676 - MGP_C3HHeJ_P0033604 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033605.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121243516 121521329 - MGP_C3HHeJ_P0033605 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033606.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121244907 121674703 - MGP_C3HHeJ_P0033606 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033607.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121244907 121672688 - MGP_C3HHeJ_P0033607 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033608.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121244955 121672676 - MGP_C3HHeJ_P0033608 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033609.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121245746 121672678 - MGP_C3HHeJ_P0033609 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033610.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121250253 121261251 - MGP_C3HHeJ_P0033610 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033611.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121256739 121327344 - MGP_C3HHeJ_P0033611 Rbfox3 protein_coding protein_coding MGP_C3HHeJ_T0033612.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121573525 121651864 - Rbfox3 protein_coding processed_transcript MGP_C3HHeJ_T0033613.1 MGP_C3HHeJ_G0019219.1 mouse_genomes_project 11 121573527 121671131 - Rbfox3 protein_coding processed_transcript MGP_C3HHeJ_T0031700.1 MGP_C3HHeJ_G0018777.1 mouse_genomes_project 11 98417992 98425646 + MGP_C3HHeJ_P0031700 Mrpl10 protein_coding protein_coding MGP_C3HHeJ_T0031701.1 MGP_C3HHeJ_G0018777.1 mouse_genomes_project 11 98418027 98424951 + MGP_C3HHeJ_P0031701 Mrpl10 protein_coding protein_coding MGP_C3HHeJ_T0101648.1 MGP_C3HHeJ_G0039614.1 mouse_genomes_project 11 83834093 83839535 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012646.1 MGP_C3HHeJ_G0010750.1 mouse_genomes_project 11 116814380 116815513 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030561.1 MGP_C3HHeJ_G0018492.1 mouse_genomes_project 11 77012211 77076508 - MGP_C3HHeJ_P0030561 Cpd protein_coding protein_coding MGP_C3HHeJ_T0030562.1 MGP_C3HHeJ_G0018492.1 mouse_genomes_project 11 77020113 77024991 - Cpd protein_coding retained_intron MGP_C3HHeJ_T0030563.1 MGP_C3HHeJ_G0018492.1 mouse_genomes_project 11 77042050 77045165 - Cpd protein_coding retained_intron MGP_C3HHeJ_T0003271.1 MGP_C3HHeJ_G0003018.1 mouse_genomes_project 11 116633045 116634311 - 1700001J04Rik antisense antisense MGP_C3HHeJ_T0003272.1 MGP_C3HHeJ_G0003018.1 mouse_genomes_project 11 116633506 116634208 - 1700001J04Rik antisense antisense MGP_C3HHeJ_T0012539.1 MGP_C3HHeJ_G0010643.1 mouse_genomes_project 11 70703253 70703526 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032049.1 MGP_C3HHeJ_G0018897.1 mouse_genomes_project 11 101911742 101918880 - MGP_C3HHeJ_P0032049 Krt16 protein_coding protein_coding MGP_C3HHeJ_T0101657.1 MGP_C3HHeJ_G0039623.1 mouse_genomes_project 11 96055444 96056181 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0028512.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47887885 47904516 + MGP_C3HHeJ_P0028512 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028513.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47887889 47901243 + MGP_C3HHeJ_P0028513 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028514.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888078 47899599 + Zfp62 protein_coding processed_transcript MGP_C3HHeJ_T0028515.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888078 47900873 + Zfp62 protein_coding retained_intron MGP_C3HHeJ_T0028516.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888078 47901074 + MGP_C3HHeJ_P0028516 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028517.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888091 47904779 + MGP_C3HHeJ_P0028517 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028518.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888099 47901633 + MGP_C3HHeJ_P0028518 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028519.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888327 47901140 + MGP_C3HHeJ_P0028519 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028520.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47888912 47903726 + MGP_C3HHeJ_P0028520 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028521.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47898650 47904772 + MGP_C3HHeJ_P0028521 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028522.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47899554 47901286 + MGP_C3HHeJ_P0028522 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0028523.1 MGP_C3HHeJ_G0017975.1 mouse_genomes_project 11 47900511 47904772 + MGP_C3HHeJ_P0028523 Zfp62 protein_coding protein_coding MGP_C3HHeJ_T0098812.1 MGP_C3HHeJ_G0037006.1 mouse_genomes_project 11 97412754 97412938 - Gm22423 snRNA snRNA MGP_C3HHeJ_T0030258.1 MGP_C3HHeJ_G0018401.1 mouse_genomes_project 11 73022742 73038797 + MGP_C3HHeJ_P0030258 P2rx1 protein_coding protein_coding MGP_C3HHeJ_T0030259.1 MGP_C3HHeJ_G0018401.1 mouse_genomes_project 11 73022954 73037723 + MGP_C3HHeJ_P0030259 P2rx1 protein_coding protein_coding MGP_C3HHeJ_T0030260.1 MGP_C3HHeJ_G0018401.1 mouse_genomes_project 11 73033387 73038794 + P2rx1 protein_coding retained_intron MGP_C3HHeJ_T0032276.1 MGP_C3HHeJ_G0018948.1 mouse_genomes_project 11 103114682 103125003 + MGP_C3HHeJ_P0032276 G6pc protein_coding protein_coding MGP_C3HHeJ_T0017037.1 MGP_C3HHeJ_G0014972.1 mouse_genomes_project 11 105660285 105660870 + Gm11642 processed_transcript processed_transcript MGP_C3HHeJ_T0032724.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107618870 107806366 + MGP_C3HHeJ_P0032724 Tanc2 protein_coding protein_coding MGP_C3HHeJ_T0032725.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107618875 107965836 + MGP_C3HHeJ_P0032725 Tanc2 protein_coding protein_coding MGP_C3HHeJ_T0032726.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107619021 107960238 + MGP_C3HHeJ_P0032726 Tanc2 protein_coding protein_coding MGP_C3HHeJ_T0032727.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107657048 107742582 + Tanc2 protein_coding processed_transcript MGP_C3HHeJ_T0032728.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107740568 107741858 + MGP_C3HHeJ_P0032728 Tanc2 protein_coding protein_coding MGP_C3HHeJ_T0032729.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107931161 107960637 + MGP_C3HHeJ_P0032729 Tanc2 protein_coding protein_coding MGP_C3HHeJ_T0032730.1 MGP_C3HHeJ_G0019037.1 mouse_genomes_project 11 107938250 107952727 + Tanc2 protein_coding processed_transcript MGP_C3HHeJ_T0029812.1 MGP_C3HHeJ_G0018310.1 mouse_genomes_project 11 69689220 69691120 - MGP_C3HHeJ_P0029812 4933402P03Rik protein_coding protein_coding MGP_C3HHeJ_T0028413.1 MGP_C3HHeJ_G0017940.1 mouse_genomes_project 11 44383402 44400067 - MGP_C3HHeJ_P0028413 Lsm11 protein_coding protein_coding MGP_C3HHeJ_T0028414.1 MGP_C3HHeJ_G0017940.1 mouse_genomes_project 11 44386213 44400067 - MGP_C3HHeJ_P0028414 Lsm11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030385.1 MGP_C3HHeJ_G0018454.1 mouse_genomes_project 11 75019803 75031126 + MGP_C3HHeJ_P0030385 Tsr1 protein_coding protein_coding MGP_C3HHeJ_T0030386.1 MGP_C3HHeJ_G0018454.1 mouse_genomes_project 11 75019823 75023639 + Tsr1 protein_coding retained_intron MGP_C3HHeJ_T0030387.1 MGP_C3HHeJ_G0018454.1 mouse_genomes_project 11 75023496 75025689 + Tsr1 protein_coding retained_intron MGP_C3HHeJ_T0030388.1 MGP_C3HHeJ_G0018454.1 mouse_genomes_project 11 75025753 75030098 + MGP_C3HHeJ_P0030388 Tsr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030389.1 MGP_C3HHeJ_G0018454.1 mouse_genomes_project 11 75026994 75030127 + Tsr1 protein_coding retained_intron MGP_C3HHeJ_T0003258.1 MGP_C3HHeJ_G0003008.1 mouse_genomes_project 11 109533147 109536310 + Gm11713 antisense antisense MGP_C3HHeJ_T0033361.1 MGP_C3HHeJ_G0019168.1 mouse_genomes_project 11 118816913 118835638 + MGP_C3HHeJ_P0033361 Ten1 protein_coding protein_coding MGP_C3HHeJ_T0033362.1 MGP_C3HHeJ_G0019168.1 mouse_genomes_project 11 118816956 118827075 + Ten1 protein_coding retained_intron MGP_C3HHeJ_T0033363.1 MGP_C3HHeJ_G0019168.1 mouse_genomes_project 11 118817017 118835568 + Ten1 protein_coding processed_transcript MGP_C3HHeJ_T0033364.1 MGP_C3HHeJ_G0019168.1 mouse_genomes_project 11 118831264 118835568 + Ten1 protein_coding processed_transcript MGP_C3HHeJ_T0101353.1 MGP_C3HHeJ_G0039423.1 mouse_genomes_project 11 83563209 83575152 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0017025.1 MGP_C3HHeJ_G0014962.1 mouse_genomes_project 11 99012749 99037833 + 2410003L11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017026.1 MGP_C3HHeJ_G0014962.1 mouse_genomes_project 11 99030649 99034659 + 2410003L11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0029015.1 MGP_C3HHeJ_G0018112.1 mouse_genomes_project 11 57820593 57826006 - MGP_C3HHeJ_P0029015 Olfr328 protein_coding protein_coding MGP_C3HHeJ_T0029016.1 MGP_C3HHeJ_G0018112.1 mouse_genomes_project 11 57820593 57822842 - MGP_C3HHeJ_P0029016 Olfr328 protein_coding protein_coding MGP_C3HHeJ_T0003283.1 MGP_C3HHeJ_G0003028.1 mouse_genomes_project 11 120488388 120489805 - Gm11724 antisense antisense MGP_C3HHeJ_T0012664.1 MGP_C3HHeJ_G0010768.1 mouse_genomes_project 11 124048261 124048716 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012608.1 MGP_C3HHeJ_G0010712.1 mouse_genomes_project 11 100856386 100857173 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033124.1 MGP_C3HHeJ_G0019128.1 mouse_genomes_project 11 117869748 117894881 + MGP_C3HHeJ_P0033124 Otop2 protein_coding protein_coding MGP_C3HHeJ_T0033126.1 MGP_C3HHeJ_G0019128.1 mouse_genomes_project 11 117885118 117886100 + Otop2 protein_coding processed_transcript MGP_C3HHeJ_T0033127.1 MGP_C3HHeJ_G0019128.1 mouse_genomes_project 11 117885349 117886093 + Otop2 protein_coding processed_transcript MGP_C3HHeJ_T0033128.1 MGP_C3HHeJ_G0019128.1 mouse_genomes_project 11 117885513 117894881 + MGP_C3HHeJ_P0033128 Otop2 protein_coding protein_coding MGP_C3HHeJ_T0029661.1 MGP_C3HHeJ_G0018271.1 mouse_genomes_project 11 68906834 68918061 + MGP_C3HHeJ_P0029661 Per1 protein_coding protein_coding MGP_C3HHeJ_T0029662.1 MGP_C3HHeJ_G0018271.1 mouse_genomes_project 11 68910547 68921564 + MGP_C3HHeJ_P0029662 Per1 protein_coding protein_coding MGP_C3HHeJ_T0029663.1 MGP_C3HHeJ_G0018271.1 mouse_genomes_project 11 68911751 68912648 + MGP_C3HHeJ_P0029663 Per1 protein_coding protein_coding MGP_C3HHeJ_T0029664.1 MGP_C3HHeJ_G0018271.1 mouse_genomes_project 11 68911757 68921552 + MGP_C3HHeJ_P0029664 Per1 protein_coding protein_coding MGP_C3HHeJ_T0029665.1 MGP_C3HHeJ_G0018271.1 mouse_genomes_project 11 68912108 68917899 + MGP_C3HHeJ_P0029665 Per1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029666.1 MGP_C3HHeJ_G0018271.1 mouse_genomes_project 11 68912121 68921564 + MGP_C3HHeJ_P0029666 Per1 protein_coding protein_coding MGP_C3HHeJ_T0012654.1 MGP_C3HHeJ_G0010758.1 mouse_genomes_project 11 119008657 119009114 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031699.1 MGP_C3HHeJ_G0018776.1 mouse_genomes_project 11 98410079 98417837 - MGP_C3HHeJ_P0031699 Lrrc46 protein_coding protein_coding MGP_C3HHeJ_T0027436.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 207705 237557 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027437.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 207705 275310 - MGP_C3HHeJ_P0027437 Limk2 protein_coding protein_coding MGP_C3HHeJ_T0027438.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 207705 237557 - MGP_C3HHeJ_P0027438 Limk2 protein_coding protein_coding MGP_C3HHeJ_T0027439.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 209189 237202 - MGP_C3HHeJ_P0027439 Limk2 protein_coding protein_coding MGP_C3HHeJ_T0027440.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 215523 219091 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027441.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 219043 222142 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027442.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 219681 222477 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027443.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 222141 275310 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027444.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 222458 222943 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027445.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 224434 235343 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027446.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 226717 237516 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0027447.1 MGP_C3HHeJ_G0017710.1 mouse_genomes_project 11 262946 275325 - Limk2 protein_coding processed_transcript MGP_C3HHeJ_T0100051.1 MGP_C3HHeJ_G0038245.1 mouse_genomes_project 11 108552890 108553025 + Gm22711 snoRNA snoRNA MGP_C3HHeJ_T0012569.1 MGP_C3HHeJ_G0010673.1 mouse_genomes_project 11 81285115 81285529 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031843.1 MGP_C3HHeJ_G0018809.1 mouse_genomes_project 11 99823041 99831759 + MGP_C3HHeJ_P0031843 Ppp1r1b protein_coding protein_coding MGP_C3HHeJ_T0031844.1 MGP_C3HHeJ_G0018809.1 mouse_genomes_project 11 99824802 99831744 + Ppp1r1b protein_coding retained_intron MGP_C3HHeJ_T0031845.1 MGP_C3HHeJ_G0018809.1 mouse_genomes_project 11 99825162 99831347 + Ppp1r1b protein_coding retained_intron MGP_C3HHeJ_T0031846.1 MGP_C3HHeJ_G0018809.1 mouse_genomes_project 11 99825436 99831242 + Ppp1r1b protein_coding processed_transcript MGP_C3HHeJ_T0031847.1 MGP_C3HHeJ_G0018809.1 mouse_genomes_project 11 99828543 99831059 + Ppp1r1b protein_coding processed_transcript MGP_C3HHeJ_T0029715.1 MGP_C3HHeJ_G0018284.1 mouse_genomes_project 11 69222994 69224023 - MGP_C3HHeJ_P0029715 protein_coding protein_coding MGP_C3HHeJ_T0101664.1 MGP_C3HHeJ_G0039630.1 mouse_genomes_project 11 101911885 101916355 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016914.1 MGP_C3HHeJ_G0014905.1 mouse_genomes_project 11 167113 192693 - Gm12592 processed_transcript processed_transcript MGP_C3HHeJ_T0009566.1 MGP_C3HHeJ_G0007699.1 mouse_genomes_project 11 3409169 3409233 + Mir7651 miRNA miRNA MGP_C3HHeJ_T0100037.1 MGP_C3HHeJ_G0038231.1 mouse_genomes_project 11 80295601 80295733 - Gm24454 snoRNA snoRNA MGP_C3HHeJ_T0006181.1 MGP_C3HHeJ_G0005157.1 mouse_genomes_project 11 64463781 64466935 - Gm12292 lincRNA lincRNA MGP_C3HHeJ_T0012396.1 MGP_C3HHeJ_G0010500.1 mouse_genomes_project 11 17550488 17550711 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100029.1 MGP_C3HHeJ_G0038223.1 mouse_genomes_project 11 75027892 75027983 + Gm22771 snoRNA snoRNA MGP_C3HHeJ_T0009648.1 MGP_C3HHeJ_G0007781.1 mouse_genomes_project 11 97606635 97606737 + Mir196a-1 miRNA miRNA MGP_C3HHeJ_T0028161.1 MGP_C3HHeJ_G0017872.1 mouse_genomes_project 11 28739702 28748611 + MGP_C3HHeJ_P0028161 Gpr75 protein_coding protein_coding MGP_C3HHeJ_T0029832.1 MGP_C3HHeJ_G0018317.1 mouse_genomes_project 11 69754953 69758103 - MGP_C3HHeJ_P0029832 Kctd11 protein_coding protein_coding MGP_C3HHeJ_T0031430.1 MGP_C3HHeJ_G0018706.1 mouse_genomes_project 11 95418922 95426059 - MGP_C3HHeJ_P0031430 Wfikkn2 protein_coding protein_coding MGP_C3HHeJ_T0031431.1 MGP_C3HHeJ_G0018706.1 mouse_genomes_project 11 95425798 95429380 - Wfikkn2 protein_coding processed_transcript MGP_C3HHeJ_T0033914.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650385 123657588 - MGP_C3HHeJ_P0033914 Dus1l protein_coding protein_coding MGP_C3HHeJ_T0033915.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650386 123651632 - Dus1l protein_coding retained_intron MGP_C3HHeJ_T0033916.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650386 123657580 - MGP_C3HHeJ_P0033916 Dus1l protein_coding protein_coding MGP_C3HHeJ_T0033917.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650386 123657580 - MGP_C3HHeJ_P0033917 Dus1l protein_coding protein_coding MGP_C3HHeJ_T0033918.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650388 123651035 - Dus1l protein_coding retained_intron MGP_C3HHeJ_T0033919.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650390 123657574 - Dus1l protein_coding retained_intron MGP_C3HHeJ_T0033920.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123650390 123657583 - MGP_C3HHeJ_P0033920 Dus1l protein_coding protein_coding MGP_C3HHeJ_T0033921.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123653958 123657562 - MGP_C3HHeJ_P0033921 Dus1l protein_coding protein_coding MGP_C3HHeJ_T0033922.1 MGP_C3HHeJ_G0019278.1 mouse_genomes_project 11 123655029 123657578 - MGP_C3HHeJ_P0033922 Dus1l protein_coding protein_coding MGP_C3HHeJ_T0030807.1 MGP_C3HHeJ_G0018545.1 mouse_genomes_project 11 79263219 79303324 + MGP_C3HHeJ_P0030807 Nos2 protein_coding protein_coding MGP_C3HHeJ_T0030808.1 MGP_C3HHeJ_G0018545.1 mouse_genomes_project 11 79267604 79302878 + MGP_C3HHeJ_P0030808 Nos2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028503.1 MGP_C3HHeJ_G0017972.1 mouse_genomes_project 11 47825380 47832494 + MGP_C3HHeJ_P0028503 Olfr1395 protein_coding protein_coding MGP_C3HHeJ_T0028504.1 MGP_C3HHeJ_G0017972.1 mouse_genomes_project 11 47831540 47832494 + MGP_C3HHeJ_P0028504 Olfr1395 protein_coding protein_coding MGP_C3HHeJ_T0006118.1 MGP_C3HHeJ_G0005103.1 mouse_genomes_project 11 21999770 22310717 + lincRNA lincRNA MGP_C3HHeJ_T0003262.1 MGP_C3HHeJ_G0003012.1 mouse_genomes_project 11 111130519 111133231 - Gm11670 antisense antisense MGP_C3HHeJ_T0003171.1 MGP_C3HHeJ_G0002939.1 mouse_genomes_project 11 81313534 81321456 - 4930507D10Rik antisense antisense MGP_C3HHeJ_T0009597.1 MGP_C3HHeJ_G0007730.1 mouse_genomes_project 11 54651403 54651459 + Mir7652 miRNA miRNA MGP_C3HHeJ_T0028330.1 MGP_C3HHeJ_G0017919.1 mouse_genomes_project 11 40209701 40309005 - MGP_C3HHeJ_P0028330 Gabrg2 protein_coding protein_coding MGP_C3HHeJ_T0028331.1 MGP_C3HHeJ_G0017919.1 mouse_genomes_project 11 40211191 40308679 - MGP_C3HHeJ_P0028331 Gabrg2 protein_coding protein_coding MGP_C3HHeJ_T0028332.1 MGP_C3HHeJ_G0017919.1 mouse_genomes_project 11 40211193 40216106 - Gabrg2 protein_coding retained_intron MGP_C3HHeJ_T0028333.1 MGP_C3HHeJ_G0017919.1 mouse_genomes_project 11 40214052 40308503 - MGP_C3HHeJ_P0028333 Gabrg2 protein_coding protein_coding MGP_C3HHeJ_T0009653.1 MGP_C3HHeJ_G0007786.1 mouse_genomes_project 11 99079277 99079348 - Gm24158 miRNA miRNA MGP_C3HHeJ_T0017010.1 MGP_C3HHeJ_G0014954.1 mouse_genomes_project 11 95308040 95331568 + B230206L02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017011.1 MGP_C3HHeJ_G0014954.1 mouse_genomes_project 11 95308057 95331568 + B230206L02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017012.1 MGP_C3HHeJ_G0014954.1 mouse_genomes_project 11 95310231 95313422 + B230206L02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012505.1 MGP_C3HHeJ_G0010609.1 mouse_genomes_project 11 58815016 58816885 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030726.1 MGP_C3HHeJ_G0018524.1 mouse_genomes_project 11 78552241 78561994 + MGP_C3HHeJ_P0030726 Sdf2 protein_coding protein_coding MGP_C3HHeJ_T0030727.1 MGP_C3HHeJ_G0018524.1 mouse_genomes_project 11 78556914 78561994 + Sdf2 protein_coding processed_transcript MGP_C3HHeJ_T0030728.1 MGP_C3HHeJ_G0018524.1 mouse_genomes_project 11 78557387 78561615 + Sdf2 protein_coding retained_intron MGP_C3HHeJ_T0006227.1 MGP_C3HHeJ_G0005189.1 mouse_genomes_project 11 88554400 88556100 + Mir142hg lincRNA lincRNA MGP_C3HHeJ_T0033623.1 MGP_C3HHeJ_G0019224.1 mouse_genomes_project 11 121912703 121987767 - MGP_C3HHeJ_P0033623 Tbc1d16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0033624.1 MGP_C3HHeJ_G0019224.1 mouse_genomes_project 11 121912711 122001844 - MGP_C3HHeJ_P0033624 Tbc1d16 protein_coding protein_coding MGP_C3HHeJ_T0033625.1 MGP_C3HHeJ_G0019224.1 mouse_genomes_project 11 121981689 121994303 - MGP_C3HHeJ_P0033625 Tbc1d16 protein_coding protein_coding MGP_C3HHeJ_T0031785.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99234975 99242837 + MGP_C3HHeJ_P0031785 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031786.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99235145 99276825 + MGP_C3HHeJ_P0031786 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031787.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99235647 99243317 + Lasp1 protein_coding retained_intron MGP_C3HHeJ_T0031788.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99235813 99271666 + MGP_C3HHeJ_P0031788 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031789.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99235973 99271654 + MGP_C3HHeJ_P0031789 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031790.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99236146 99271622 + MGP_C3HHeJ_P0031790 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031791.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99236272 99260907 + MGP_C3HHeJ_P0031791 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031792.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99236278 99242917 + MGP_C3HHeJ_P0031792 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031793.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99237973 99260909 + MGP_C3HHeJ_P0031793 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031794.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99241189 99274178 + MGP_C3HHeJ_P0031794 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031795.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99242307 99242898 + MGP_C3HHeJ_P0031795 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031796.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99242499 99251779 + MGP_C3HHeJ_P0031796 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031797.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99251244 99260948 + MGP_C3HHeJ_P0031797 Lasp1 protein_coding protein_coding MGP_C3HHeJ_T0031798.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99271242 99274264 + Lasp1 protein_coding retained_intron MGP_C3HHeJ_T0031799.1 MGP_C3HHeJ_G0018797.1 mouse_genomes_project 11 99271482 99272443 + Lasp1 protein_coding retained_intron MGP_C3HHeJ_T0031188.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87322069 87424962 - MGP_C3HHeJ_P0031188 Vmp1 protein_coding protein_coding MGP_C3HHeJ_T0031189.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87323135 87340882 - Vmp1 protein_coding processed_transcript MGP_C3HHeJ_T0031190.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87323225 87325179 - Vmp1 protein_coding processed_transcript MGP_C3HHeJ_T0031191.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87323474 87325066 - Vmp1 protein_coding processed_transcript MGP_C3HHeJ_T0031192.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87323477 87340914 - Vmp1 protein_coding processed_transcript MGP_C3HHeJ_T0031193.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87382213 87405316 - Vmp1 protein_coding processed_transcript MGP_C3HHeJ_T0031194.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87406296 87424947 - Vmp1 protein_coding processed_transcript MGP_C3HHeJ_T0031195.1 MGP_C3HHeJ_G0018646.1 mouse_genomes_project 11 87406396 87412921 - MGP_C3HHeJ_P0031195 Vmp1 protein_coding protein_coding MGP_C3HHeJ_T0028934.1 MGP_C3HHeJ_G0018081.1 mouse_genomes_project 11 54536321 54563018 - MGP_C3HHeJ_P0028934 Sparc protein_coding protein_coding MGP_C3HHeJ_T0028935.1 MGP_C3HHeJ_G0018081.1 mouse_genomes_project 11 54536322 54562836 - MGP_C3HHeJ_P0028935 Sparc protein_coding protein_coding MGP_C3HHeJ_T0028936.1 MGP_C3HHeJ_G0018081.1 mouse_genomes_project 11 54537205 54541491 - Sparc protein_coding processed_transcript MGP_C3HHeJ_T0028937.1 MGP_C3HHeJ_G0018081.1 mouse_genomes_project 11 54537338 54543893 - Sparc protein_coding processed_transcript MGP_C3HHeJ_T0028938.1 MGP_C3HHeJ_G0018081.1 mouse_genomes_project 11 54541168 54562836 - MGP_C3HHeJ_P0028938 Sparc protein_coding protein_coding MGP_C3HHeJ_T0028939.1 MGP_C3HHeJ_G0018081.1 mouse_genomes_project 11 54550941 54562838 - Sparc protein_coding processed_transcript MGP_C3HHeJ_T0016965.1 MGP_C3HHeJ_G0014931.1 mouse_genomes_project 11 57007283 57016855 - processed_transcript processed_transcript MGP_C3HHeJ_T0016966.1 MGP_C3HHeJ_G0014931.1 mouse_genomes_project 11 57007303 57016852 - processed_transcript processed_transcript MGP_C3HHeJ_T0016967.1 MGP_C3HHeJ_G0014931.1 mouse_genomes_project 11 57008058 57016836 - processed_transcript processed_transcript MGP_C3HHeJ_T0028012.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21029376 21038366 - MGP_C3HHeJ_P0028012 Ahsa2 protein_coding protein_coding MGP_C3HHeJ_T0028013.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21030410 21033134 - Ahsa2 protein_coding processed_transcript MGP_C3HHeJ_T0028014.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21031148 21032252 - Ahsa2 protein_coding processed_transcript MGP_C3HHeJ_T0028015.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21031225 21038682 - MGP_C3HHeJ_P0028015 Ahsa2 protein_coding protein_coding MGP_C3HHeJ_T0028016.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21031254 21031905 - Ahsa2 protein_coding processed_transcript MGP_C3HHeJ_T0028017.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21031936 21038733 - MGP_C3HHeJ_P0028017 Ahsa2 protein_coding protein_coding MGP_C3HHeJ_T0028018.1 MGP_C3HHeJ_G0017842.1 mouse_genomes_project 11 21033981 21038723 - MGP_C3HHeJ_P0028018 Ahsa2 protein_coding protein_coding MGP_C3HHeJ_T0009688.1 MGP_C3HHeJ_G0007821.1 mouse_genomes_project 11 122871997 122872109 - Gm25948 miRNA miRNA MGP_C3HHeJ_T0012618.1 MGP_C3HHeJ_G0010722.1 mouse_genomes_project 11 103944966 103945291 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012563.1 MGP_C3HHeJ_G0010667.1 mouse_genomes_project 11 79042750 79043774 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031378.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91619143 91668829 - MGP_C3HHeJ_P0031378 Tom1l1 protein_coding protein_coding MGP_C3HHeJ_T0031379.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91621359 91668823 - MGP_C3HHeJ_P0031379 Tom1l1 protein_coding protein_coding MGP_C3HHeJ_T0031380.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91621359 91668801 - MGP_C3HHeJ_P0031380 Tom1l1 protein_coding protein_coding MGP_C3HHeJ_T0031381.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91621897 91625570 - Tom1l1 protein_coding retained_intron MGP_C3HHeJ_T0031382.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91622504 91668792 - MGP_C3HHeJ_P0031382 Tom1l1 protein_coding protein_coding MGP_C3HHeJ_T0031383.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91632715 91638974 - Tom1l1 protein_coding retained_intron MGP_C3HHeJ_T0031384.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91652762 91668810 - MGP_C3HHeJ_P0031384 Tom1l1 protein_coding protein_coding MGP_C3HHeJ_T0031385.1 MGP_C3HHeJ_G0018696.1 mouse_genomes_project 11 91664502 91669587 - Tom1l1 protein_coding processed_transcript MGP_C3HHeJ_T0028786.1 MGP_C3HHeJ_G0018045.1 mouse_genomes_project 11 52487197 52497757 + MGP_C3HHeJ_P0028786 Shroom1 protein_coding protein_coding MGP_C3HHeJ_T0028787.1 MGP_C3HHeJ_G0018045.1 mouse_genomes_project 11 52487222 52497289 + MGP_C3HHeJ_P0028787 Shroom1 protein_coding protein_coding MGP_C3HHeJ_T0028788.1 MGP_C3HHeJ_G0018045.1 mouse_genomes_project 11 52487238 52497746 + Shroom1 protein_coding retained_intron MGP_C3HHeJ_T0028789.1 MGP_C3HHeJ_G0018045.1 mouse_genomes_project 11 52487241 52497492 + Shroom1 protein_coding retained_intron MGP_C3HHeJ_T0028790.1 MGP_C3HHeJ_G0018045.1 mouse_genomes_project 11 52487271 52497293 + MGP_C3HHeJ_P0028790 Shroom1 protein_coding protein_coding MGP_C3HHeJ_T0028791.1 MGP_C3HHeJ_G0018045.1 mouse_genomes_project 11 52495486 52495844 + Shroom1 protein_coding processed_transcript MGP_C3HHeJ_T0028877.1 MGP_C3HHeJ_G0018067.1 mouse_genomes_project 11 53537020 53617343 + MGP_C3HHeJ_P0028877 Fnip1 protein_coding protein_coding MGP_C3HHeJ_T0028878.1 MGP_C3HHeJ_G0018067.1 mouse_genomes_project 11 53563288 53601806 + MGP_C3HHeJ_P0028878 Fnip1 protein_coding protein_coding MGP_C3HHeJ_T0031003.1 MGP_C3HHeJ_G0018600.1 mouse_genomes_project 11 84004496 84014165 + MGP_C3HHeJ_P0031003 Rasl10b protein_coding protein_coding MGP_C3HHeJ_T0031004.1 MGP_C3HHeJ_G0018600.1 mouse_genomes_project 11 84005034 84016370 + MGP_C3HHeJ_P0031004 Rasl10b protein_coding protein_coding MGP_C3HHeJ_T0031005.1 MGP_C3HHeJ_G0018600.1 mouse_genomes_project 11 84005034 84016368 + MGP_C3HHeJ_P0031005 Rasl10b protein_coding protein_coding MGP_C3HHeJ_T0031006.1 MGP_C3HHeJ_G0018600.1 mouse_genomes_project 11 84005418 84016369 + MGP_C3HHeJ_P0031006 Rasl10b protein_coding protein_coding MGP_C3HHeJ_T0030026.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70487159 70542858 + MGP_C3HHeJ_P0030026 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030027.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70487168 70542285 + MGP_C3HHeJ_P0030027 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030028.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70487176 70542854 + MGP_C3HHeJ_P0030028 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030029.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70487295 70542859 + MGP_C3HHeJ_P0030029 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030030.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70487348 70541869 + MGP_C3HHeJ_P0030030 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030031.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70525363 70532066 + Mink1 protein_coding processed_transcript MGP_C3HHeJ_T0030032.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70528589 70542859 + MGP_C3HHeJ_P0030032 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030033.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70531234 70534376 + MGP_C3HHeJ_P0030033 Mink1 protein_coding protein_coding MGP_C3HHeJ_T0030034.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70531257 70534031 + MGP_C3HHeJ_P0030034 Mink1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030035.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70533652 70534725 + Mink1 protein_coding retained_intron MGP_C3HHeJ_T0030036.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70534763 70535780 + Mink1 protein_coding retained_intron MGP_C3HHeJ_T0030037.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70536689 70537952 + Mink1 protein_coding retained_intron MGP_C3HHeJ_T0030038.1 MGP_C3HHeJ_G0018356.1 mouse_genomes_project 11 70537293 70539136 + Mink1 protein_coding retained_intron MGP_C3HHeJ_T0027409.1 MGP_C3HHeJ_G0017707.1 mouse_genomes_project 11 106163 126148 - MGP_C3HHeJ_P0027409 Drg1 protein_coding protein_coding MGP_C3HHeJ_T0027410.1 MGP_C3HHeJ_G0017707.1 mouse_genomes_project 11 106353 112931 - Drg1 protein_coding retained_intron MGP_C3HHeJ_T0027411.1 MGP_C3HHeJ_G0017707.1 mouse_genomes_project 11 114482 122302 - Drg1 protein_coding retained_intron MGP_C3HHeJ_T0027412.1 MGP_C3HHeJ_G0017707.1 mouse_genomes_project 11 116429 126147 - Drg1 protein_coding processed_transcript MGP_C3HHeJ_T0027413.1 MGP_C3HHeJ_G0017707.1 mouse_genomes_project 11 117616 126170 - Drg1 protein_coding retained_intron MGP_C3HHeJ_T0027414.1 MGP_C3HHeJ_G0017707.1 mouse_genomes_project 11 119213 126148 - MGP_C3HHeJ_P0027414 Drg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011216.1 MGP_C3HHeJ_G0009349.1 mouse_genomes_project 11 96228178 96228294 + Gm24877 misc_RNA misc_RNA MGP_C3HHeJ_T0032374.1 MGP_C3HHeJ_G0018969.1 mouse_genomes_project 11 103871104 103885196 + MGP_C3HHeJ_P0032374 Cd300lg protein_coding protein_coding MGP_C3HHeJ_T0032375.1 MGP_C3HHeJ_G0018969.1 mouse_genomes_project 11 103871104 103885196 + MGP_C3HHeJ_P0032375 Cd300lg protein_coding protein_coding MGP_C3HHeJ_T0032376.1 MGP_C3HHeJ_G0018969.1 mouse_genomes_project 11 103871104 103880091 + MGP_C3HHeJ_P0032376 Cd300lg protein_coding protein_coding MGP_C3HHeJ_T0032377.1 MGP_C3HHeJ_G0018969.1 mouse_genomes_project 11 103871104 103885196 + MGP_C3HHeJ_P0032377 Cd300lg protein_coding protein_coding MGP_C3HHeJ_T0031571.1 MGP_C3HHeJ_G0018740.1 mouse_genomes_project 11 96860134 96879090 - MGP_C3HHeJ_P0031571 Ngfr protein_coding protein_coding MGP_C3HHeJ_T0027713.1 MGP_C3HHeJ_G0017770.1 mouse_genomes_project 11 3194856 3196471 + MGP_C3HHeJ_P0027713 A730071L15Rik protein_coding protein_coding MGP_C3HHeJ_T0027628.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057139 2064302 + MGP_C3HHeJ_P0027628 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027629.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057290 2058801 + Rhbdd3 protein_coding processed_transcript MGP_C3HHeJ_T0027630.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057486 2058721 + Rhbdd3 protein_coding processed_transcript MGP_C3HHeJ_T0027631.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057646 2061560 + MGP_C3HHeJ_P0027631 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027632.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057652 2064302 + MGP_C3HHeJ_P0027632 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027633.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057689 2061465 + MGP_C3HHeJ_P0027633 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027634.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2057821 2061471 + MGP_C3HHeJ_P0027634 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027635.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2058370 2064302 + MGP_C3HHeJ_P0027635 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027636.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2058383 2063439 + MGP_C3HHeJ_P0027636 Rhbdd3 protein_coding protein_coding MGP_C3HHeJ_T0027637.1 MGP_C3HHeJ_G0017751.1 mouse_genomes_project 11 2058450 2064304 + Rhbdd3 protein_coding processed_transcript MGP_C3HHeJ_T0032014.1 MGP_C3HHeJ_G0018870.1 mouse_genomes_project 11 101354917 101365052 - MGP_C3HHeJ_P0032014 protein_coding protein_coding MGP_C3HHeJ_T0031222.1 MGP_C3HHeJ_G0018657.1 mouse_genomes_project 11 88129739 88159420 - MGP_C3HHeJ_P0031222 Rad51c protein_coding protein_coding MGP_C3HHeJ_T0031223.1 MGP_C3HHeJ_G0018657.1 mouse_genomes_project 11 88131675 88159403 - MGP_C3HHeJ_P0031223 Rad51c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031224.1 MGP_C3HHeJ_G0018657.1 mouse_genomes_project 11 88132181 88159851 - MGP_C3HHeJ_P0031224 Rad51c protein_coding protein_coding MGP_C3HHeJ_T0031225.1 MGP_C3HHeJ_G0018657.1 mouse_genomes_project 11 88132468 88159325 - MGP_C3HHeJ_P0031225 Rad51c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028660.1 MGP_C3HHeJ_G0018013.1 mouse_genomes_project 11 49813754 49814767 + MGP_C3HHeJ_P0028660 Olfr51 protein_coding protein_coding MGP_C3HHeJ_T0012367.1 MGP_C3HHeJ_G0010471.1 mouse_genomes_project 11 5911350 5912120 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099992.1 MGP_C3HHeJ_G0038186.1 mouse_genomes_project 11 8660285 8660413 - Gm26458 snoRNA snoRNA MGP_C3HHeJ_T0030983.1 MGP_C3HHeJ_G0018593.1 mouse_genomes_project 11 83607546 83613945 + MGP_C3HHeJ_P0030983 Slfn2 protein_coding protein_coding MGP_C3HHeJ_T0098352.1 MGP_C3HHeJ_G0036562.1 mouse_genomes_project 11 109609937 109611124 + Gm11722 sense_intronic sense_intronic MGP_C3HHeJ_T0012589.1 MGP_C3HHeJ_G0010693.1 mouse_genomes_project 11 89317153 89317683 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011205.1 MGP_C3HHeJ_G0009338.1 mouse_genomes_project 11 50161694 50161949 + Gm25082 misc_RNA misc_RNA MGP_C3HHeJ_T0009683.1 MGP_C3HHeJ_G0007816.1 mouse_genomes_project 11 121614959 121615025 - Gm25040 miRNA miRNA MGP_C3HHeJ_T0032793.1 MGP_C3HHeJ_G0019057.1 mouse_genomes_project 11 108407944 108418282 + MGP_C3HHeJ_P0032793 Prr29 protein_coding protein_coding MGP_C3HHeJ_T0032794.1 MGP_C3HHeJ_G0019057.1 mouse_genomes_project 11 108415993 108418264 + MGP_C3HHeJ_P0032794 Prr29 protein_coding protein_coding MGP_C3HHeJ_T0032795.1 MGP_C3HHeJ_G0019057.1 mouse_genomes_project 11 108416012 108418410 + MGP_C3HHeJ_P0032795 Prr29 protein_coding protein_coding MGP_C3HHeJ_T0032796.1 MGP_C3HHeJ_G0019057.1 mouse_genomes_project 11 108416012 108418325 + MGP_C3HHeJ_P0032796 Prr29 protein_coding protein_coding MGP_C3HHeJ_T0032797.1 MGP_C3HHeJ_G0019057.1 mouse_genomes_project 11 108416012 108418516 + MGP_C3HHeJ_P0032797 Prr29 protein_coding protein_coding MGP_C3HHeJ_T0032798.1 MGP_C3HHeJ_G0019057.1 mouse_genomes_project 11 108416012 108418726 + MGP_C3HHeJ_P0032798 Prr29 protein_coding protein_coding MGP_C3HHeJ_T0009608.1 MGP_C3HHeJ_G0007741.1 mouse_genomes_project 11 67985604 67985724 + Mir6406 miRNA miRNA MGP_C3HHeJ_T0030695.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78470275 78481594 - Nek8 protein_coding retained_intron MGP_C3HHeJ_T0030696.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78470275 78481658 - MGP_C3HHeJ_P0030696 Nek8 protein_coding protein_coding MGP_C3HHeJ_T0030697.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78470279 78471557 - Nek8 protein_coding retained_intron MGP_C3HHeJ_T0030698.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78470690 78481610 - Nek8 protein_coding retained_intron MGP_C3HHeJ_T0030699.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78471423 78472203 - Nek8 protein_coding retained_intron MGP_C3HHeJ_T0030700.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78473141 78473998 - Nek8 protein_coding retained_intron MGP_C3HHeJ_T0030701.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78474160 78481597 - Nek8 protein_coding retained_intron MGP_C3HHeJ_T0030702.1 MGP_C3HHeJ_G0018518.1 mouse_genomes_project 11 78475356 78481617 - MGP_C3HHeJ_P0030702 Nek8 protein_coding protein_coding MGP_C3HHeJ_T0098824.1 MGP_C3HHeJ_G0037018.1 mouse_genomes_project 11 108832846 108832953 - Gm25889 snRNA snRNA MGP_C3HHeJ_T0030261.1 MGP_C3HHeJ_G0018402.1 mouse_genomes_project 11 73042608 73066522 + Camkk1 protein_coding retained_intron MGP_C3HHeJ_T0030262.1 MGP_C3HHeJ_G0018402.1 mouse_genomes_project 11 73042643 73066533 + MGP_C3HHeJ_P0030262 Camkk1 protein_coding protein_coding MGP_C3HHeJ_T0030263.1 MGP_C3HHeJ_G0018402.1 mouse_genomes_project 11 73050185 73064752 + MGP_C3HHeJ_P0030263 Camkk1 protein_coding protein_coding MGP_C3HHeJ_T0033795.1 MGP_C3HHeJ_G0019255.1 mouse_genomes_project 11 123328624 123335975 + MGP_C3HHeJ_P0033795 Slc25a10 protein_coding protein_coding MGP_C3HHeJ_T0033796.1 MGP_C3HHeJ_G0019255.1 mouse_genomes_project 11 123328672 123335381 + Slc25a10 protein_coding processed_transcript MGP_C3HHeJ_T0033797.1 MGP_C3HHeJ_G0019255.1 mouse_genomes_project 11 123328693 123332701 + Slc25a10 protein_coding processed_transcript MGP_C3HHeJ_T0033798.1 MGP_C3HHeJ_G0019255.1 mouse_genomes_project 11 123328699 123333704 + Slc25a10 protein_coding processed_transcript MGP_C3HHeJ_T0033799.1 MGP_C3HHeJ_G0019255.1 mouse_genomes_project 11 123332886 123334751 + Slc25a10 protein_coding processed_transcript MGP_C3HHeJ_T0033800.1 MGP_C3HHeJ_G0019255.1 mouse_genomes_project 11 123334512 123335065 + Slc25a10 protein_coding processed_transcript MGP_C3HHeJ_T0033807.1 MGP_C3HHeJ_G0019258.1 mouse_genomes_project 11 123390198 123391352 - MGP_C3HHeJ_P0033807 Ppp1r27 protein_coding protein_coding MGP_C3HHeJ_T0017006.1 MGP_C3HHeJ_G0014952.1 mouse_genomes_project 11 85499977 85501668 + 4930502E09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0033002.1 MGP_C3HHeJ_G0019099.1 mouse_genomes_project 11 115158358 115163887 + MGP_C3HHeJ_P0033002 Sox9 protein_coding protein_coding MGP_C3HHeJ_T0009589.1 MGP_C3HHeJ_G0007722.1 mouse_genomes_project 11 48844154 48844252 + Mir340 miRNA miRNA MGP_C3HHeJ_T0028461.1 MGP_C3HHeJ_G0017956.1 mouse_genomes_project 11 45312855 45351129 + MGP_C3HHeJ_P0028461 Timd4 protein_coding protein_coding MGP_C3HHeJ_T0006148.1 MGP_C3HHeJ_G0005127.1 mouse_genomes_project 11 41757941 41759651 + Gm12148 lincRNA lincRNA MGP_C3HHeJ_T0006221.1 MGP_C3HHeJ_G0005185.1 mouse_genomes_project 11 85184066 85194139 + Lhx1os lincRNA lincRNA MGP_C3HHeJ_T0006222.1 MGP_C3HHeJ_G0005185.1 mouse_genomes_project 11 85184075 85194139 + Lhx1os lincRNA lincRNA MGP_C3HHeJ_T0006223.1 MGP_C3HHeJ_G0005185.1 mouse_genomes_project 11 85184090 85194138 + Lhx1os lincRNA lincRNA MGP_C3HHeJ_T0031637.1 MGP_C3HHeJ_G0018764.1 mouse_genomes_project 11 97707640 97710100 + MGP_C3HHeJ_P0031637 Hoxb1 protein_coding protein_coding MGP_C3HHeJ_T0031638.1 MGP_C3HHeJ_G0018764.1 mouse_genomes_project 11 97708146 97709110 + Hoxb1 protein_coding processed_transcript MGP_C3HHeJ_T0029018.1 MGP_C3HHeJ_G0018114.1 mouse_genomes_project 11 57849235 57853656 + MGP_C3HHeJ_P0029018 Olfr325 protein_coding protein_coding MGP_C3HHeJ_T0029019.1 MGP_C3HHeJ_G0018114.1 mouse_genomes_project 11 57853231 57854296 + MGP_C3HHeJ_P0029019 Olfr325 protein_coding protein_coding MGP_C3HHeJ_T0003105.1 MGP_C3HHeJ_G0002884.1 mouse_genomes_project 11 54665013 54678593 + Gm12236 antisense antisense MGP_C3HHeJ_T0000818.1 MGP_C3HHeJ_G0000759.1 mouse_genomes_project 11 43730351 43751673 - TEC TEC MGP_C3HHeJ_T0009621.1 MGP_C3HHeJ_G0007754.1 mouse_genomes_project 11 70703286 70703379 - Gm22760 miRNA miRNA MGP_C3HHeJ_T0028476.1 MGP_C3HHeJ_G0017960.1 mouse_genomes_project 11 47402527 47415607 + MGP_C3HHeJ_P0028476 protein_coding protein_coding MGP_C3HHeJ_T0028477.1 MGP_C3HHeJ_G0017960.1 mouse_genomes_project 11 47402533 47406484 + MGP_C3HHeJ_P0028477 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028478.1 MGP_C3HHeJ_G0017960.1 mouse_genomes_project 11 47403576 47410598 + MGP_C3HHeJ_P0028478 protein_coding protein_coding MGP_C3HHeJ_T0028479.1 MGP_C3HHeJ_G0017960.1 mouse_genomes_project 11 47403866 47410655 + MGP_C3HHeJ_P0028479 protein_coding protein_coding MGP_C3HHeJ_T0028480.1 MGP_C3HHeJ_G0017960.1 mouse_genomes_project 11 47403899 47416266 + MGP_C3HHeJ_P0028480 protein_coding protein_coding MGP_C3HHeJ_T0028481.1 MGP_C3HHeJ_G0017960.1 mouse_genomes_project 11 47412952 47417288 + protein_coding retained_intron MGP_C3HHeJ_T0031021.1 MGP_C3HHeJ_G0018605.1 mouse_genomes_project 11 84108323 84118752 - MGP_C3HHeJ_P0031021 Heatr9 protein_coding protein_coding MGP_C3HHeJ_T0031325.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89216773 89615359 - MGP_C3HHeJ_P0031325 Msi2 protein_coding protein_coding MGP_C3HHeJ_T0031326.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89221272 89615306 - MGP_C3HHeJ_P0031326 Msi2 protein_coding protein_coding MGP_C3HHeJ_T0031327.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89246315 89479360 - Msi2 protein_coding retained_intron MGP_C3HHeJ_T0031328.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89364440 89615315 - Msi2 protein_coding retained_intron MGP_C3HHeJ_T0031329.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89479267 89616608 - MGP_C3HHeJ_P0031329 Msi2 protein_coding protein_coding MGP_C3HHeJ_T0031330.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89577467 89615359 - MGP_C3HHeJ_P0031330 Msi2 protein_coding protein_coding MGP_C3HHeJ_T0031331.1 MGP_C3HHeJ_G0018679.1 mouse_genomes_project 11 89605766 89615359 - Msi2 protein_coding processed_transcript MGP_C3HHeJ_T0012482.1 MGP_C3HHeJ_G0010586.1 mouse_genomes_project 11 52367372 52367760 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006145.1 MGP_C3HHeJ_G0005124.1 mouse_genomes_project 11 38301764 38643937 + lincRNA lincRNA MGP_C3HHeJ_T0012434.1 MGP_C3HHeJ_G0010538.1 mouse_genomes_project 11 28389914 28390631 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006197.1 MGP_C3HHeJ_G0005169.1 mouse_genomes_project 11 71705124 71706194 - Gm12326 lincRNA lincRNA MGP_C3HHeJ_T0006198.1 MGP_C3HHeJ_G0005169.1 mouse_genomes_project 11 71705738 71706175 - Gm12326 lincRNA lincRNA MGP_C3HHeJ_T0030299.1 MGP_C3HHeJ_G0018414.1 mouse_genomes_project 11 73372857 73389053 + MGP_C3HHeJ_P0030299 Spata22 protein_coding protein_coding MGP_C3HHeJ_T0030300.1 MGP_C3HHeJ_G0018414.1 mouse_genomes_project 11 73372857 73399340 + MGP_C3HHeJ_P0030300 Spata22 protein_coding protein_coding MGP_C3HHeJ_T0030301.1 MGP_C3HHeJ_G0018414.1 mouse_genomes_project 11 73374268 73388955 + MGP_C3HHeJ_P0030301 Spata22 protein_coding unknown_likely_coding MGP_C3HHeJ_T0016961.1 MGP_C3HHeJ_G0014928.1 mouse_genomes_project 11 47408698 47418572 - Gm16170 processed_transcript processed_transcript MGP_C3HHeJ_T0028802.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52603386 52638812 + MGP_C3HHeJ_P0028802 Kif3a protein_coding protein_coding MGP_C3HHeJ_T0028803.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52603386 52638009 + MGP_C3HHeJ_P0028803 Kif3a protein_coding protein_coding MGP_C3HHeJ_T0028804.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52603404 52638006 + MGP_C3HHeJ_P0028804 Kif3a protein_coding protein_coding MGP_C3HHeJ_T0028805.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52603533 52637963 + MGP_C3HHeJ_P0028805 Kif3a protein_coding protein_coding MGP_C3HHeJ_T0028806.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52603723 52615140 + Kif3a protein_coding processed_transcript MGP_C3HHeJ_T0028807.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52603868 52615765 + MGP_C3HHeJ_P0028807 Kif3a protein_coding protein_coding MGP_C3HHeJ_T0028808.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52615124 52622905 + MGP_C3HHeJ_P0028808 Kif3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028809.1 MGP_C3HHeJ_G0018050.1 mouse_genomes_project 11 52629959 52638204 + MGP_C3HHeJ_P0028809 Kif3a protein_coding protein_coding MGP_C3HHeJ_T0031823.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99540174 99609067 - MGP_C3HHeJ_P0031823 Fbxl20 protein_coding protein_coding MGP_C3HHeJ_T0031824.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99548600 99609061 - Fbxl20 protein_coding retained_intron MGP_C3HHeJ_T0031825.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99552618 99557174 - MGP_C3HHeJ_P0031825 Fbxl20 protein_coding protein_coding MGP_C3HHeJ_T0031826.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99555673 99609861 - MGP_C3HHeJ_P0031826 Fbxl20 protein_coding protein_coding MGP_C3HHeJ_T0031827.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99558851 99587102 - Fbxl20 protein_coding processed_transcript MGP_C3HHeJ_T0031828.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99566614 99587102 - MGP_C3HHeJ_P0031828 Fbxl20 protein_coding protein_coding MGP_C3HHeJ_T0031829.1 MGP_C3HHeJ_G0018805.1 mouse_genomes_project 11 99586119 99587086 - Fbxl20 protein_coding processed_transcript MGP_C3HHeJ_T0031340.1 MGP_C3HHeJ_G0018683.1 mouse_genomes_project 11 89874179 89901481 + MGP_C3HHeJ_P0031340 Coil protein_coding protein_coding MGP_C3HHeJ_T0031341.1 MGP_C3HHeJ_G0018683.1 mouse_genomes_project 11 89881211 89901481 + MGP_C3HHeJ_P0031341 Coil protein_coding protein_coding MGP_C3HHeJ_T0031342.1 MGP_C3HHeJ_G0018683.1 mouse_genomes_project 11 89894401 89900822 + Coil protein_coding retained_intron MGP_C3HHeJ_T0033342.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118760428 118785950 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033343.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118760428 118765284 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033344.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118760428 118786323 - MGP_C3HHeJ_P0033344 Fbf1 protein_coding protein_coding MGP_C3HHeJ_T0033345.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118760429 118784084 - MGP_C3HHeJ_P0033345 Fbf1 protein_coding protein_coding MGP_C3HHeJ_T0033346.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118761385 118768925 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033347.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118772846 118775618 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033348.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118772877 118777021 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033349.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118773213 118786324 - MGP_C3HHeJ_P0033349 Fbf1 protein_coding protein_coding MGP_C3HHeJ_T0033350.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118774104 118784053 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033351.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118781498 118786336 - Fbf1 protein_coding processed_transcript MGP_C3HHeJ_T0033352.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118782849 118786318 - MGP_C3HHeJ_P0033352 Fbf1 protein_coding protein_coding MGP_C3HHeJ_T0033353.1 MGP_C3HHeJ_G0019166.1 mouse_genomes_project 11 118783952 118785935 - Fbf1 protein_coding retained_intron MGP_C3HHeJ_T0029738.1 MGP_C3HHeJ_G0018292.1 mouse_genomes_project 11 69443354 69449448 - MGP_C3HHeJ_P0029738 Atp1b2 protein_coding protein_coding MGP_C3HHeJ_T0029739.1 MGP_C3HHeJ_G0018292.1 mouse_genomes_project 11 69443359 69449561 - Atp1b2 protein_coding processed_transcript MGP_C3HHeJ_T0029740.1 MGP_C3HHeJ_G0018292.1 mouse_genomes_project 11 69444284 69446360 - MGP_C3HHeJ_P0029740 Atp1b2 protein_coding protein_coding MGP_C3HHeJ_T0029741.1 MGP_C3HHeJ_G0018292.1 mouse_genomes_project 11 69444976 69447232 - Atp1b2 protein_coding processed_transcript MGP_C3HHeJ_T0029742.1 MGP_C3HHeJ_G0018292.1 mouse_genomes_project 11 69445762 69446781 - Atp1b2 protein_coding processed_transcript MGP_C3HHeJ_T0009686.1 MGP_C3HHeJ_G0007819.1 mouse_genomes_project 11 122817262 122817360 - Mir338 miRNA miRNA MGP_C3HHeJ_T0029438.1 MGP_C3HHeJ_G0018217.1 mouse_genomes_project 11 62435977 62467134 + MGP_C3HHeJ_P0029438 Fbxw10 protein_coding protein_coding MGP_C3HHeJ_T0029439.1 MGP_C3HHeJ_G0018217.1 mouse_genomes_project 11 62436031 62467131 + MGP_C3HHeJ_P0029439 Fbxw10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029440.1 MGP_C3HHeJ_G0018217.1 mouse_genomes_project 11 62436031 62467131 + MGP_C3HHeJ_P0029440 Fbxw10 protein_coding protein_coding MGP_C3HHeJ_T0029441.1 MGP_C3HHeJ_G0018217.1 mouse_genomes_project 11 62436036 62440277 + Fbxw10 protein_coding retained_intron MGP_C3HHeJ_T0029442.1 MGP_C3HHeJ_G0018217.1 mouse_genomes_project 11 62436040 62467112 + MGP_C3HHeJ_P0029442 Fbxw10 protein_coding protein_coding MGP_C3HHeJ_T0029443.1 MGP_C3HHeJ_G0018217.1 mouse_genomes_project 11 62464544 62466422 + Fbxw10 protein_coding processed_transcript MGP_C3HHeJ_T0032658.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185509 106289290 + MGP_C3HHeJ_P0032658 protein_coding protein_coding MGP_C3HHeJ_T0032659.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185598 106251500 + protein_coding retained_intron MGP_C3HHeJ_T0032660.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185603 106262705 + MGP_C3HHeJ_P0032660 protein_coding protein_coding MGP_C3HHeJ_T0032661.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185634 106285637 + MGP_C3HHeJ_P0032661 protein_coding protein_coding MGP_C3HHeJ_T0032662.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185692 106262789 + MGP_C3HHeJ_P0032662 protein_coding protein_coding MGP_C3HHeJ_T0032663.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185698 106262765 + protein_coding processed_transcript MGP_C3HHeJ_T0032664.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185700 106251107 + MGP_C3HHeJ_P0032664 protein_coding protein_coding MGP_C3HHeJ_T0032665.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106185703 106285422 + MGP_C3HHeJ_P0032665 protein_coding protein_coding MGP_C3HHeJ_T0032666.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106238626 106285390 + MGP_C3HHeJ_P0032666 protein_coding protein_coding MGP_C3HHeJ_T0032667.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106238626 106285390 + MGP_C3HHeJ_P0032667 protein_coding protein_coding MGP_C3HHeJ_T0032668.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106275720 106285444 + protein_coding processed_transcript MGP_C3HHeJ_T0032669.1 MGP_C3HHeJ_G0019025.1 mouse_genomes_project 11 106279632 106285413 + protein_coding processed_transcript MGP_C3HHeJ_T0027782.1 MGP_C3HHeJ_G0017788.1 mouse_genomes_project 11 4286136 4293909 - MGP_C3HHeJ_P0027782 Igfbp3 protein_coding protein_coding MGP_C3HHeJ_T0027783.1 MGP_C3HHeJ_G0017788.1 mouse_genomes_project 11 4287736 4293935 - MGP_C3HHeJ_P0027783 Igfbp3 protein_coding protein_coding MGP_C3HHeJ_T0033087.1 MGP_C3HHeJ_G0019119.1 mouse_genomes_project 11 117603390 117613542 - MGP_C3HHeJ_P0033087 Cd300e protein_coding protein_coding MGP_C3HHeJ_T0029028.1 MGP_C3HHeJ_G0018120.1 mouse_genomes_project 11 57992460 58054056 + MGP_C3HHeJ_P0029028 protein_coding protein_coding MGP_C3HHeJ_T0100010.1 MGP_C3HHeJ_G0038204.1 mouse_genomes_project 11 47356067 47356148 + Snord96a snoRNA snoRNA MGP_C3HHeJ_T0012591.1 MGP_C3HHeJ_G0010695.1 mouse_genomes_project 11 91514102 91514765 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029103.1 MGP_C3HHeJ_G0018152.1 mouse_genomes_project 11 58801843 58813190 - MGP_C3HHeJ_P0029103 Zfp867 protein_coding protein_coding MGP_C3HHeJ_T0031296.1 MGP_C3HHeJ_G0018671.1 mouse_genomes_project 11 88710588 88711668 - MGP_C3HHeJ_P0031296 Olfr463 protein_coding protein_coding MGP_C3HHeJ_T0030981.1 MGP_C3HHeJ_G0018591.1 mouse_genomes_project 11 83493197 83506206 - MGP_C3HHeJ_P0030981 protein_coding protein_coding MGP_C3HHeJ_T0012371.1 MGP_C3HHeJ_G0010475.1 mouse_genomes_project 11 8544636 8545466 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012496.1 MGP_C3HHeJ_G0010600.1 mouse_genomes_project 11 55452900 55453129 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012352.1 MGP_C3HHeJ_G0010456.1 mouse_genomes_project 11 2467833 2468088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009682.1 MGP_C3HHeJ_G0007815.1 mouse_genomes_project 11 120727354 120727435 + Mir6933 miRNA miRNA MGP_C3HHeJ_T0033306.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118641790 118673746 + MGP_C3HHeJ_P0033306 Unk protein_coding protein_coding MGP_C3HHeJ_T0033307.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118641790 118673746 + MGP_C3HHeJ_P0033307 Unk protein_coding protein_coding MGP_C3HHeJ_T0033308.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118641791 118653523 + Unk protein_coding processed_transcript MGP_C3HHeJ_T0033309.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118651212 118673746 + Unk protein_coding processed_transcript MGP_C3HHeJ_T0033310.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118661819 118666206 + Unk protein_coding retained_intron MGP_C3HHeJ_T0033311.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118665823 118668573 + Unk protein_coding retained_intron MGP_C3HHeJ_T0033312.1 MGP_C3HHeJ_G0019160.1 mouse_genomes_project 11 118668403 118671589 + Unk protein_coding retained_intron MGP_C3HHeJ_T0003251.1 MGP_C3HHeJ_G0003002.1 mouse_genomes_project 11 108885096 108886435 - Gm11706 antisense antisense MGP_C3HHeJ_T0028121.1 MGP_C3HHeJ_G0017864.1 mouse_genomes_project 11 27320917 27352043 + MGP_C3HHeJ_P0028121 Clhc1 protein_coding protein_coding MGP_C3HHeJ_T0028122.1 MGP_C3HHeJ_G0017864.1 mouse_genomes_project 11 27336701 27352022 + Clhc1 protein_coding processed_transcript MGP_C3HHeJ_T0028123.1 MGP_C3HHeJ_G0017864.1 mouse_genomes_project 11 27336718 27351880 + Clhc1 protein_coding processed_transcript MGP_C3HHeJ_T0033031.1 MGP_C3HHeJ_G0019105.1 mouse_genomes_project 11 116160331 116185436 - MGP_C3HHeJ_P0033031 Cdc42ep4 protein_coding protein_coding MGP_C3HHeJ_T0033032.1 MGP_C3HHeJ_G0019105.1 mouse_genomes_project 11 116160333 116186003 - MGP_C3HHeJ_P0033032 Cdc42ep4 protein_coding protein_coding MGP_C3HHeJ_T0033033.1 MGP_C3HHeJ_G0019105.1 mouse_genomes_project 11 116162448 116172780 - MGP_C3HHeJ_P0033033 Cdc42ep4 protein_coding protein_coding MGP_C3HHeJ_T0033034.1 MGP_C3HHeJ_G0019105.1 mouse_genomes_project 11 116162770 116185272 - MGP_C3HHeJ_P0033034 Cdc42ep4 protein_coding protein_coding MGP_C3HHeJ_T0029207.1 MGP_C3HHeJ_G0018174.1 mouse_genomes_project 11 60170734 60185163 + MGP_C3HHeJ_P0029207 Llgl1 protein_coding protein_coding MGP_C3HHeJ_T0029208.1 MGP_C3HHeJ_G0018174.1 mouse_genomes_project 11 60170856 60185163 + MGP_C3HHeJ_P0029208 Llgl1 protein_coding protein_coding MGP_C3HHeJ_T0029209.1 MGP_C3HHeJ_G0018174.1 mouse_genomes_project 11 60175190 60177066 + Llgl1 protein_coding retained_intron MGP_C3HHeJ_T0009596.1 MGP_C3HHeJ_G0007729.1 mouse_genomes_project 11 53757796 53757873 - Gm26116 miRNA miRNA MGP_C3HHeJ_T0033035.1 MGP_C3HHeJ_G0019106.1 mouse_genomes_project 11 116210346 116511453 - MGP_C3HHeJ_P0033035 Sdk2 protein_coding protein_coding MGP_C3HHeJ_T0033036.1 MGP_C3HHeJ_G0019106.1 mouse_genomes_project 11 116227848 116250929 - Sdk2 protein_coding processed_transcript MGP_C3HHeJ_T0033037.1 MGP_C3HHeJ_G0019106.1 mouse_genomes_project 11 116245299 116266761 - Sdk2 protein_coding processed_transcript MGP_C3HHeJ_T0033038.1 MGP_C3HHeJ_G0019106.1 mouse_genomes_project 11 116291818 116511210 - MGP_C3HHeJ_P0033038 Sdk2 protein_coding protein_coding MGP_C3HHeJ_T0033039.1 MGP_C3HHeJ_G0019106.1 mouse_genomes_project 11 116309015 116512281 - Sdk2 protein_coding processed_transcript MGP_C3HHeJ_T0033040.1 MGP_C3HHeJ_G0019106.1 mouse_genomes_project 11 116380187 116512264 - Sdk2 protein_coding processed_transcript MGP_C3HHeJ_T0033529.1 MGP_C3HHeJ_G0019201.1 mouse_genomes_project 11 120514621 120550222 + MGP_C3HHeJ_P0033529 Gm20708 protein_coding protein_coding MGP_C3HHeJ_T0029754.1 MGP_C3HHeJ_G0018296.1 mouse_genomes_project 11 69500671 69502085 + MGP_C3HHeJ_P0029754 Sox15 protein_coding protein_coding MGP_C3HHeJ_T0030049.1 MGP_C3HHeJ_G0018360.1 mouse_genomes_project 11 70574706 70577569 - MGP_C3HHeJ_P0030049 Slc25a11 protein_coding protein_coding MGP_C3HHeJ_T0030050.1 MGP_C3HHeJ_G0018360.1 mouse_genomes_project 11 70575205 70576421 - Slc25a11 protein_coding retained_intron MGP_C3HHeJ_T0030051.1 MGP_C3HHeJ_G0018360.1 mouse_genomes_project 11 70575741 70577989 - MGP_C3HHeJ_P0030051 Slc25a11 protein_coding protein_coding MGP_C3HHeJ_T0030052.1 MGP_C3HHeJ_G0018360.1 mouse_genomes_project 11 70576419 70577489 - Slc25a11 protein_coding retained_intron MGP_C3HHeJ_T0030053.1 MGP_C3HHeJ_G0018360.1 mouse_genomes_project 11 70576425 70577410 - MGP_C3HHeJ_P0030053 Slc25a11 protein_coding protein_coding MGP_C3HHeJ_T0100028.1 MGP_C3HHeJ_G0038222.1 mouse_genomes_project 11 75027207 75027300 + Snord91a snoRNA snoRNA MGP_C3HHeJ_T0028500.1 MGP_C3HHeJ_G0017970.1 mouse_genomes_project 11 47789372 47790353 - MGP_C3HHeJ_P0028500 protein_coding protein_coding MGP_C3HHeJ_T0012377.1 MGP_C3HHeJ_G0010481.1 mouse_genomes_project 11 12032293 12032890 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029550.1 MGP_C3HHeJ_G0018250.1 mouse_genomes_project 11 67673466 67694964 - Cfap52 protein_coding processed_transcript MGP_C3HHeJ_T0029551.1 MGP_C3HHeJ_G0018250.1 mouse_genomes_project 11 67673468 67720199 - MGP_C3HHeJ_P0029551 Cfap52 protein_coding protein_coding MGP_C3HHeJ_T0029552.1 MGP_C3HHeJ_G0018250.1 mouse_genomes_project 11 67673613 67680328 - Cfap52 protein_coding processed_transcript MGP_C3HHeJ_T0029553.1 MGP_C3HHeJ_G0018250.1 mouse_genomes_project 11 67688325 67720208 - MGP_C3HHeJ_P0029553 Cfap52 protein_coding protein_coding MGP_C3HHeJ_T0031152.1 MGP_C3HHeJ_G0018639.1 mouse_genomes_project 11 86598799 86630418 + MGP_C3HHeJ_P0031152 Tbx4 protein_coding protein_coding MGP_C3HHeJ_T0031153.1 MGP_C3HHeJ_G0018639.1 mouse_genomes_project 11 86602439 86630420 + MGP_C3HHeJ_P0031153 Tbx4 protein_coding protein_coding MGP_C3HHeJ_T0031154.1 MGP_C3HHeJ_G0018639.1 mouse_genomes_project 11 86609890 86630418 + MGP_C3HHeJ_P0031154 Tbx4 protein_coding protein_coding MGP_C3HHeJ_T0098757.1 MGP_C3HHeJ_G0036951.1 mouse_genomes_project 11 14048017 14048124 - Gm25698 snRNA snRNA MGP_C3HHeJ_T0027844.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9186504 9247482 - MGP_C3HHeJ_P0027844 Grb10 protein_coding protein_coding MGP_C3HHeJ_T0027845.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9192675 9194574 - Grb10 protein_coding processed_transcript MGP_C3HHeJ_T0027846.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9200853 9202292 - Grb10 protein_coding processed_transcript MGP_C3HHeJ_T0027847.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9205561 9211967 - Grb10 protein_coding processed_transcript MGP_C3HHeJ_T0027848.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9210691 9294477 - MGP_C3HHeJ_P0027848 Grb10 protein_coding protein_coding MGP_C3HHeJ_T0027849.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9223496 9282547 - MGP_C3HHeJ_P0027849 Grb10 protein_coding protein_coding MGP_C3HHeJ_T0027850.1 MGP_C3HHeJ_G0017802.1 mouse_genomes_project 11 9223590 9282955 - MGP_C3HHeJ_P0027850 Grb10 protein_coding protein_coding MGP_C3HHeJ_T0012344.1 MGP_C3HHeJ_G0010448.1 mouse_genomes_project 11 501796 502168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030958.1 MGP_C3HHeJ_G0018586.1 mouse_genomes_project 11 83387056 83401234 - MGP_C3HHeJ_P0030958 Rad51d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030959.1 MGP_C3HHeJ_G0018586.1 mouse_genomes_project 11 83387321 83401259 - MGP_C3HHeJ_P0030959 Rad51d protein_coding protein_coding MGP_C3HHeJ_T0030960.1 MGP_C3HHeJ_G0018586.1 mouse_genomes_project 11 83389345 83401234 - MGP_C3HHeJ_P0030960 Rad51d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030961.1 MGP_C3HHeJ_G0018586.1 mouse_genomes_project 11 83389345 83401234 - MGP_C3HHeJ_P0030961 Rad51d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030962.1 MGP_C3HHeJ_G0018586.1 mouse_genomes_project 11 83389345 83401234 - MGP_C3HHeJ_P0030962 Rad51d protein_coding protein_coding MGP_C3HHeJ_T0030963.1 MGP_C3HHeJ_G0018586.1 mouse_genomes_project 11 83389345 83401234 - MGP_C3HHeJ_P0030963 Rad51d protein_coding protein_coding MGP_C3HHeJ_T0027501.1 MGP_C3HHeJ_G0017724.1 mouse_genomes_project 11 877995 893233 + MGP_C3HHeJ_P0027501 Gal3st1 protein_coding protein_coding MGP_C3HHeJ_T0027502.1 MGP_C3HHeJ_G0017724.1 mouse_genomes_project 11 878072 893222 + MGP_C3HHeJ_P0027502 Gal3st1 protein_coding protein_coding MGP_C3HHeJ_T0027503.1 MGP_C3HHeJ_G0017724.1 mouse_genomes_project 11 884289 893215 + MGP_C3HHeJ_P0027503 Gal3st1 protein_coding protein_coding MGP_C3HHeJ_T0006258.1 MGP_C3HHeJ_G0005210.1 mouse_genomes_project 11 101962432 101964473 + Gm12349 lincRNA lincRNA MGP_C3HHeJ_T0030337.1 MGP_C3HHeJ_G0018437.1 mouse_genomes_project 11 74153220 74169636 + MGP_C3HHeJ_P0030337 protein_coding protein_coding MGP_C3HHeJ_T0030338.1 MGP_C3HHeJ_G0018437.1 mouse_genomes_project 11 74153220 74166773 + MGP_C3HHeJ_P0030338 protein_coding protein_coding MGP_C3HHeJ_T0030339.1 MGP_C3HHeJ_G0018437.1 mouse_genomes_project 11 74153430 74165994 + protein_coding processed_transcript MGP_C3HHeJ_T0030340.1 MGP_C3HHeJ_G0018437.1 mouse_genomes_project 11 74153450 74165722 + MGP_C3HHeJ_P0030340 protein_coding protein_coding MGP_C3HHeJ_T0009606.1 MGP_C3HHeJ_G0007739.1 mouse_genomes_project 11 65399234 65399334 - Mir744 miRNA miRNA MGP_C3HHeJ_T0031800.1 MGP_C3HHeJ_G0018798.1 mouse_genomes_project 11 99278829 99281093 + MGP_C3HHeJ_P0031800 B230217C12Rik protein_coding protein_coding MGP_C3HHeJ_T0031801.1 MGP_C3HHeJ_G0018798.1 mouse_genomes_project 11 99279342 99282149 + B230217C12Rik protein_coding lincRNA MGP_C3HHeJ_T0031802.1 MGP_C3HHeJ_G0018798.1 mouse_genomes_project 11 99279364 99281859 + B230217C12Rik protein_coding processed_transcript MGP_C3HHeJ_T0031803.1 MGP_C3HHeJ_G0018798.1 mouse_genomes_project 11 99279368 99281093 + B230217C12Rik protein_coding processed_transcript MGP_C3HHeJ_T0027921.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18129536 18188361 - MGP_C3HHeJ_P0027921 Aftph protein_coding protein_coding MGP_C3HHeJ_T0027922.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18129536 18174382 - MGP_C3HHeJ_P0027922 Aftph protein_coding protein_coding MGP_C3HHeJ_T0027923.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18130168 18173917 - MGP_C3HHeJ_P0027923 Aftph protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027924.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18130194 18188227 - MGP_C3HHeJ_P0027924 Aftph protein_coding protein_coding MGP_C3HHeJ_T0027925.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18130433 18137255 - Aftph protein_coding retained_intron MGP_C3HHeJ_T0027926.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18130570 18172947 - MGP_C3HHeJ_P0027926 Aftph protein_coding protein_coding MGP_C3HHeJ_T0027927.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18140460 18158280 - Aftph protein_coding retained_intron MGP_C3HHeJ_T0027928.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18148488 18158206 - Aftph protein_coding retained_intron MGP_C3HHeJ_T0027929.1 MGP_C3HHeJ_G0017823.1 mouse_genomes_project 11 18154582 18158186 - Aftph protein_coding retained_intron MGP_C3HHeJ_T0012381.1 MGP_C3HHeJ_G0010485.1 mouse_genomes_project 11 13745752 13746863 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012638.1 MGP_C3HHeJ_G0010742.1 mouse_genomes_project 11 110901491 110901915 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011209.1 MGP_C3HHeJ_G0009342.1 mouse_genomes_project 11 67085762 67086072 + Gm26476 misc_RNA misc_RNA MGP_C3HHeJ_T0033336.1 MGP_C3HHeJ_G0019165.1 mouse_genomes_project 11 118749967 118757010 - MGP_C3HHeJ_P0033336 Mrpl38 protein_coding protein_coding MGP_C3HHeJ_T0033337.1 MGP_C3HHeJ_G0019165.1 mouse_genomes_project 11 118749971 118756917 - Mrpl38 protein_coding retained_intron MGP_C3HHeJ_T0033338.1 MGP_C3HHeJ_G0019165.1 mouse_genomes_project 11 118750935 118756931 - Mrpl38 protein_coding retained_intron MGP_C3HHeJ_T0033339.1 MGP_C3HHeJ_G0019165.1 mouse_genomes_project 11 118752201 118752596 - Mrpl38 protein_coding retained_intron MGP_C3HHeJ_T0033340.1 MGP_C3HHeJ_G0019165.1 mouse_genomes_project 11 118752395 118752767 - Mrpl38 protein_coding retained_intron MGP_C3HHeJ_T0033341.1 MGP_C3HHeJ_G0019165.1 mouse_genomes_project 11 118755921 118757007 - Mrpl38 protein_coding retained_intron MGP_C3HHeJ_T0031999.1 MGP_C3HHeJ_G0018855.1 mouse_genomes_project 11 101127967 101128574 - MGP_C3HHeJ_P0031999 Krtap3-1 protein_coding protein_coding MGP_C3HHeJ_T0033150.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117980436 117983750 - Atp5h protein_coding processed_transcript MGP_C3HHeJ_T0033151.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117980436 117982746 - Atp5h protein_coding processed_transcript MGP_C3HHeJ_T0033152.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117980436 117985702 - MGP_C3HHeJ_P0033152 Atp5h protein_coding protein_coding MGP_C3HHeJ_T0033153.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117980436 117985657 - MGP_C3HHeJ_P0033153 Atp5h protein_coding protein_coding MGP_C3HHeJ_T0033154.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117980436 117985702 - MGP_C3HHeJ_P0033154 Atp5h protein_coding protein_coding MGP_C3HHeJ_T0033155.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117980495 117984235 - MGP_C3HHeJ_P0033155 Atp5h protein_coding protein_coding MGP_C3HHeJ_T0033156.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117981545 117984469 - MGP_C3HHeJ_P0033156 Atp5h protein_coding protein_coding MGP_C3HHeJ_T0033157.1 MGP_C3HHeJ_G0019134.1 mouse_genomes_project 11 117982580 117984801 - Atp5h protein_coding processed_transcript MGP_C3HHeJ_T0027813.1 MGP_C3HHeJ_G0017796.1 mouse_genomes_project 11 8356123 8499426 + MGP_C3HHeJ_P0027813 Vwc2 protein_coding protein_coding MGP_C3HHeJ_T0027814.1 MGP_C3HHeJ_G0017796.1 mouse_genomes_project 11 8356644 8504866 + MGP_C3HHeJ_P0027814 Vwc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027815.1 MGP_C3HHeJ_G0017796.1 mouse_genomes_project 11 8357751 8502573 + MGP_C3HHeJ_P0027815 Vwc2 protein_coding protein_coding MGP_C3HHeJ_T0027816.1 MGP_C3HHeJ_G0017796.1 mouse_genomes_project 11 8358385 8370028 + Vwc2 protein_coding processed_transcript MGP_C3HHeJ_T0033761.1 MGP_C3HHeJ_G0019248.1 mouse_genomes_project 11 123275990 123280295 + MGP_C3HHeJ_P0033761 Tspan10 protein_coding protein_coding MGP_C3HHeJ_T0033762.1 MGP_C3HHeJ_G0019248.1 mouse_genomes_project 11 123276017 123277652 + Tspan10 protein_coding processed_transcript MGP_C3HHeJ_T0009576.1 MGP_C3HHeJ_G0007709.1 mouse_genomes_project 11 26524504 26524573 - Mir216c miRNA miRNA MGP_C3HHeJ_T0032559.1 MGP_C3HHeJ_G0018999.1 mouse_genomes_project 11 104783211 104784776 + MGP_C3HHeJ_P0032559 Fam187a protein_coding protein_coding MGP_C3HHeJ_T0099994.1 MGP_C3HHeJ_G0038188.1 mouse_genomes_project 11 9958318 9958448 + Gm22789 snoRNA snoRNA MGP_C3HHeJ_T0027591.1 MGP_C3HHeJ_G0017745.1 mouse_genomes_project 11 1825764 1863445 + MGP_C3HHeJ_P0027591 Thoc5 protein_coding protein_coding MGP_C3HHeJ_T0027592.1 MGP_C3HHeJ_G0017745.1 mouse_genomes_project 11 1825787 1863443 + MGP_C3HHeJ_P0027592 Thoc5 protein_coding protein_coding MGP_C3HHeJ_T0027593.1 MGP_C3HHeJ_G0017745.1 mouse_genomes_project 11 1832391 1848888 + Thoc5 protein_coding processed_transcript MGP_C3HHeJ_T0027594.1 MGP_C3HHeJ_G0017745.1 mouse_genomes_project 11 1832391 1834645 + Thoc5 protein_coding processed_transcript MGP_C3HHeJ_T0027595.1 MGP_C3HHeJ_G0017745.1 mouse_genomes_project 11 1832391 1852803 + MGP_C3HHeJ_P0027595 Thoc5 protein_coding protein_coding MGP_C3HHeJ_T0027596.1 MGP_C3HHeJ_G0017745.1 mouse_genomes_project 11 1849883 1855063 + Thoc5 protein_coding processed_transcript MGP_C3HHeJ_T0016948.1 MGP_C3HHeJ_G0014920.1 mouse_genomes_project 11 21038580 21039340 + 1700030C12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016949.1 MGP_C3HHeJ_G0014920.1 mouse_genomes_project 11 21038584 21041424 + 1700030C12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016950.1 MGP_C3HHeJ_G0014920.1 mouse_genomes_project 11 21038610 21040955 + 1700030C12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016951.1 MGP_C3HHeJ_G0014920.1 mouse_genomes_project 11 21040613 21041407 + 1700030C12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0029717.1 MGP_C3HHeJ_G0018285.1 mouse_genomes_project 11 69225491 69226329 + Naa38 protein_coding processed_transcript MGP_C3HHeJ_T0029718.1 MGP_C3HHeJ_G0018285.1 mouse_genomes_project 11 69225651 69226684 + MGP_C3HHeJ_P0029718 Naa38 protein_coding protein_coding MGP_C3HHeJ_T0029719.1 MGP_C3HHeJ_G0018285.1 mouse_genomes_project 11 69225818 69226684 + Naa38 protein_coding processed_transcript MGP_C3HHeJ_T0029720.1 MGP_C3HHeJ_G0018285.1 mouse_genomes_project 11 69226122 69226684 + Naa38 protein_coding processed_transcript MGP_C3HHeJ_T0033372.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118911652 118931255 - Exoc7 protein_coding processed_transcript MGP_C3HHeJ_T0033373.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118911652 118931255 - MGP_C3HHeJ_P0033373 Exoc7 protein_coding protein_coding MGP_C3HHeJ_T0033374.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118911652 118931255 - MGP_C3HHeJ_P0033374 Exoc7 protein_coding protein_coding MGP_C3HHeJ_T0033375.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118911652 118931255 - MGP_C3HHeJ_P0033375 Exoc7 protein_coding protein_coding MGP_C3HHeJ_T0033376.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118912714 118914120 - Exoc7 protein_coding processed_transcript MGP_C3HHeJ_T0033377.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118912760 118915110 - Exoc7 protein_coding processed_transcript MGP_C3HHeJ_T0033378.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118916211 118921442 - Exoc7 protein_coding processed_transcript MGP_C3HHeJ_T0033379.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118919355 118931173 - MGP_C3HHeJ_P0033379 Exoc7 protein_coding protein_coding MGP_C3HHeJ_T0033380.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118929133 118931248 - MGP_C3HHeJ_P0033380 Exoc7 protein_coding protein_coding MGP_C3HHeJ_T0033381.1 MGP_C3HHeJ_G0019172.1 mouse_genomes_project 11 118929552 118931754 - MGP_C3HHeJ_P0033381 Exoc7 protein_coding protein_coding MGP_C3HHeJ_T0003101.1 MGP_C3HHeJ_G0002881.1 mouse_genomes_project 11 53932885 53938857 + Lyrm7os antisense antisense MGP_C3HHeJ_T0006196.1 MGP_C3HHeJ_G0005168.1 mouse_genomes_project 11 71663090 71665125 - Gm12325 lincRNA lincRNA MGP_C3HHeJ_T0012645.1 MGP_C3HHeJ_G0010749.1 mouse_genomes_project 11 116190595 116191100 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031945.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100447964 100497932 + MGP_C3HHeJ_P0031945 Rara protein_coding protein_coding MGP_C3HHeJ_T0031946.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100457846 100497932 + MGP_C3HHeJ_P0031946 Rara protein_coding protein_coding MGP_C3HHeJ_T0031947.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100457866 100498718 + MGP_C3HHeJ_P0031947 Rara protein_coding protein_coding MGP_C3HHeJ_T0031948.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100458476 100470266 + Rara protein_coding processed_transcript MGP_C3HHeJ_T0031949.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100459859 100498718 + MGP_C3HHeJ_P0031949 Rara protein_coding protein_coding MGP_C3HHeJ_T0031950.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100459860 100470395 + Rara protein_coding processed_transcript MGP_C3HHeJ_T0031951.1 MGP_C3HHeJ_G0018833.1 mouse_genomes_project 11 100481804 100498718 + MGP_C3HHeJ_P0031951 Rara protein_coding protein_coding MGP_C3HHeJ_T0032331.1 MGP_C3HHeJ_G0018960.1 mouse_genomes_project 11 103414569 103418373 + Rdm1 protein_coding processed_transcript MGP_C3HHeJ_T0032332.1 MGP_C3HHeJ_G0018960.1 mouse_genomes_project 11 103415384 103423606 + MGP_C3HHeJ_P0032332 Rdm1 protein_coding protein_coding MGP_C3HHeJ_T0032333.1 MGP_C3HHeJ_G0018960.1 mouse_genomes_project 11 103415414 103421341 + Rdm1 protein_coding processed_transcript MGP_C3HHeJ_T0032334.1 MGP_C3HHeJ_G0018960.1 mouse_genomes_project 11 103415832 103423578 + MGP_C3HHeJ_P0032334 Rdm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032335.1 MGP_C3HHeJ_G0018960.1 mouse_genomes_project 11 103421245 103423466 + Rdm1 protein_coding retained_intron MGP_C3HHeJ_T0012441.1 MGP_C3HHeJ_G0010545.1 mouse_genomes_project 11 28995254 28996033 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027784.1 MGP_C3HHeJ_G0017789.1 mouse_genomes_project 11 5518593 5762099 - MGP_C3HHeJ_P0027784 Tns3 protein_coding protein_coding MGP_C3HHeJ_T0027785.1 MGP_C3HHeJ_G0017789.1 mouse_genomes_project 11 5538109 5555597 - Tns3 protein_coding processed_transcript MGP_C3HHeJ_T0027786.1 MGP_C3HHeJ_G0017789.1 mouse_genomes_project 11 5624332 5631831 - Tns3 protein_coding processed_transcript MGP_C3HHeJ_T0027787.1 MGP_C3HHeJ_G0017789.1 mouse_genomes_project 11 5632144 5665090 - Tns3 protein_coding processed_transcript MGP_C3HHeJ_T0017035.1 MGP_C3HHeJ_G0014971.1 mouse_genomes_project 11 105632749 105659168 + C130046K22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017036.1 MGP_C3HHeJ_G0014971.1 mouse_genomes_project 11 105632749 105639371 + C130046K22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100047.1 MGP_C3HHeJ_G0038241.1 mouse_genomes_project 11 100544290 100544412 - Gm23451 snoRNA snoRNA MGP_C3HHeJ_T0017034.1 MGP_C3HHeJ_G0014970.1 mouse_genomes_project 11 105177339 105180862 - 1700028N14Rik processed_transcript processed_transcript MGP_C3HHeJ_T0033974.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124106078 124113483 - MGP_C3HHeJ_P0033974 BC017643 protein_coding protein_coding MGP_C3HHeJ_T0033975.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124106078 124113479 - MGP_C3HHeJ_P0033975 BC017643 protein_coding protein_coding MGP_C3HHeJ_T0033976.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124107154 124112960 - BC017643 protein_coding retained_intron MGP_C3HHeJ_T0033977.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124107437 124111556 - BC017643 protein_coding retained_intron MGP_C3HHeJ_T0033978.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124107716 124113269 - MGP_C3HHeJ_P0033978 BC017643 protein_coding protein_coding MGP_C3HHeJ_T0033979.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124108060 124113409 - MGP_C3HHeJ_P0033979 BC017643 protein_coding protein_coding MGP_C3HHeJ_T0033980.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124108087 124113496 - MGP_C3HHeJ_P0033980 BC017643 protein_coding protein_coding MGP_C3HHeJ_T0033981.1 MGP_C3HHeJ_G0019291.1 mouse_genomes_project 11 124110944 124113397 - BC017643 protein_coding processed_transcript MGP_C3HHeJ_T0012653.1 MGP_C3HHeJ_G0010757.1 mouse_genomes_project 11 118331518 118331732 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098805.1 MGP_C3HHeJ_G0036999.1 mouse_genomes_project 11 88205511 88205618 - Gm23137 snRNA snRNA MGP_C3HHeJ_T0012462.1 MGP_C3HHeJ_G0010566.1 mouse_genomes_project 11 42062463 42063147 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029822.1 MGP_C3HHeJ_G0018314.1 mouse_genomes_project 11 69721572 69726233 + MGP_C3HHeJ_P0029822 Plscr3 protein_coding protein_coding MGP_C3HHeJ_T0029823.1 MGP_C3HHeJ_G0018314.1 mouse_genomes_project 11 69721813 69727255 + MGP_C3HHeJ_P0029823 Plscr3 protein_coding protein_coding MGP_C3HHeJ_T0029824.1 MGP_C3HHeJ_G0018314.1 mouse_genomes_project 11 69721813 69723572 + MGP_C3HHeJ_P0029824 Plscr3 protein_coding protein_coding MGP_C3HHeJ_T0029825.1 MGP_C3HHeJ_G0018314.1 mouse_genomes_project 11 69721872 69726240 + MGP_C3HHeJ_P0029825 Plscr3 protein_coding protein_coding MGP_C3HHeJ_T0029648.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881402 68883627 + MGP_C3HHeJ_P0029648 Tmem107 protein_coding protein_coding MGP_C3HHeJ_T0029649.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881407 68883890 + MGP_C3HHeJ_P0029649 Tmem107 protein_coding protein_coding MGP_C3HHeJ_T0029650.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881409 68883420 + Tmem107 protein_coding processed_transcript MGP_C3HHeJ_T0029651.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881450 68882100 + Tmem107 protein_coding processed_transcript MGP_C3HHeJ_T0029652.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881469 68883858 + Tmem107 protein_coding processed_transcript MGP_C3HHeJ_T0029653.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881514 68883621 + Tmem107 protein_coding processed_transcript MGP_C3HHeJ_T0029654.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881532 68883413 + Tmem107 protein_coding processed_transcript MGP_C3HHeJ_T0029655.1 MGP_C3HHeJ_G0018269.1 mouse_genomes_project 11 68881898 68883157 + Tmem107 protein_coding processed_transcript MGP_C3HHeJ_T0028792.1 MGP_C3HHeJ_G0018046.1 mouse_genomes_project 11 52500353 52501084 - MGP_C3HHeJ_P0028792 Gm9837 protein_coding protein_coding MGP_C3HHeJ_T0003197.1 MGP_C3HHeJ_G0002957.1 mouse_genomes_project 11 96418571 96432592 + Dlx4os antisense antisense MGP_C3HHeJ_T0012611.1 MGP_C3HHeJ_G0010715.1 mouse_genomes_project 11 101347228 101347396 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028278.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32250715 32817715 - MGP_C3HHeJ_P0028278 Dock2 protein_coding protein_coding MGP_C3HHeJ_T0028279.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32254459 32255571 - Dock2 protein_coding retained_intron MGP_C3HHeJ_T0028280.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32296769 32817715 - MGP_C3HHeJ_P0028280 Dock2 protein_coding protein_coding MGP_C3HHeJ_T0028281.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32331375 32336364 - Dock2 protein_coding retained_intron MGP_C3HHeJ_T0028284.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32388943 32722925 - MGP_C3HHeJ_P0028284 Dock2 protein_coding protein_coding MGP_C3HHeJ_T0028285.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32468160 32817706 - Dock2 protein_coding retained_intron MGP_C3HHeJ_T0028286.1 MGP_C3HHeJ_G0017906.1 mouse_genomes_project 11 32468160 32817715 - MGP_C3HHeJ_P0028286 Dock2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027546.1 MGP_C3HHeJ_G0017734.1 mouse_genomes_project 11 1132349 1135594 + Osm protein_coding processed_transcript MGP_C3HHeJ_T0027547.1 MGP_C3HHeJ_G0017734.1 mouse_genomes_project 11 1132349 1136956 + MGP_C3HHeJ_P0027547 Osm protein_coding protein_coding MGP_C3HHeJ_T0003288.1 MGP_C3HHeJ_G0003033.1 mouse_genomes_project 11 122737107 122744003 - Gm11767 antisense antisense MGP_C3HHeJ_T0012542.1 MGP_C3HHeJ_G0010646.1 mouse_genomes_project 11 72851503 72853293 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011200.1 MGP_C3HHeJ_G0009333.1 mouse_genomes_project 11 524606 524753 - Gm27640 misc_RNA misc_RNA MGP_C3HHeJ_T0029748.1 MGP_C3HHeJ_G0018295.1 mouse_genomes_project 11 69478514 69498655 + MGP_C3HHeJ_P0029748 Fxr2 protein_coding protein_coding MGP_C3HHeJ_T0029749.1 MGP_C3HHeJ_G0018295.1 mouse_genomes_project 11 69485553 69486812 + Fxr2 protein_coding processed_transcript MGP_C3HHeJ_T0029750.1 MGP_C3HHeJ_G0018295.1 mouse_genomes_project 11 69488947 69495159 + Fxr2 protein_coding processed_transcript MGP_C3HHeJ_T0029751.1 MGP_C3HHeJ_G0018295.1 mouse_genomes_project 11 69494962 69496439 + Fxr2 protein_coding processed_transcript MGP_C3HHeJ_T0029752.1 MGP_C3HHeJ_G0018295.1 mouse_genomes_project 11 69496486 69497080 + Fxr2 protein_coding processed_transcript MGP_C3HHeJ_T0029753.1 MGP_C3HHeJ_G0018295.1 mouse_genomes_project 11 69497677 69498281 + Fxr2 protein_coding processed_transcript MGP_C3HHeJ_T0006143.1 MGP_C3HHeJ_G0005122.1 mouse_genomes_project 11 35829523 35843724 + Gm12128 lincRNA lincRNA MGP_C3HHeJ_T0033014.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116072321 116089572 + MGP_C3HHeJ_P0033014 Cog1 protein_coding protein_coding MGP_C3HHeJ_T0033015.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116072480 116089549 + MGP_C3HHeJ_P0033015 Cog1 protein_coding protein_coding MGP_C3HHeJ_T0033016.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116078509 116080072 + Cog1 protein_coding retained_intron MGP_C3HHeJ_T0033017.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116081198 116095034 + MGP_C3HHeJ_P0033017 Cog1 protein_coding protein_coding MGP_C3HHeJ_T0033018.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116081335 116088792 + MGP_C3HHeJ_P0033018 Cog1 protein_coding protein_coding MGP_C3HHeJ_T0033019.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116081353 116088828 + MGP_C3HHeJ_P0033019 Cog1 protein_coding protein_coding MGP_C3HHeJ_T0033020.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116082407 116089550 + MGP_C3HHeJ_P0033020 Cog1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033021.1 MGP_C3HHeJ_G0019102.1 mouse_genomes_project 11 116083117 116089550 + MGP_C3HHeJ_P0033021 Cog1 protein_coding protein_coding MGP_C3HHeJ_T0032325.1 MGP_C3HHeJ_G0018959.1 mouse_genomes_project 11 103352113 103362084 + MGP_C3HHeJ_P0032325 Tmem106a protein_coding protein_coding MGP_C3HHeJ_T0032326.1 MGP_C3HHeJ_G0018959.1 mouse_genomes_project 11 103352113 103362084 + MGP_C3HHeJ_P0032326 Tmem106a protein_coding protein_coding MGP_C3HHeJ_T0032327.1 MGP_C3HHeJ_G0018959.1 mouse_genomes_project 11 103352115 103359730 + Tmem106a protein_coding processed_transcript MGP_C3HHeJ_T0032328.1 MGP_C3HHeJ_G0018959.1 mouse_genomes_project 11 103352128 103359236 + MGP_C3HHeJ_P0032328 Tmem106a protein_coding protein_coding MGP_C3HHeJ_T0032329.1 MGP_C3HHeJ_G0018959.1 mouse_genomes_project 11 103352171 103359191 + MGP_C3HHeJ_P0032329 Tmem106a protein_coding protein_coding MGP_C3HHeJ_T0032330.1 MGP_C3HHeJ_G0018959.1 mouse_genomes_project 11 103355703 103361062 + Tmem106a protein_coding processed_transcript MGP_C3HHeJ_T0029012.1 MGP_C3HHeJ_G0018109.1 mouse_genomes_project 11 57774971 57822766 - MGP_C3HHeJ_P0029012 protein_coding protein_coding MGP_C3HHeJ_T0012556.1 MGP_C3HHeJ_G0010660.1 mouse_genomes_project 11 77802067 77803015 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032757.1 MGP_C3HHeJ_G0019047.1 mouse_genomes_project 11 108202297 108244357 - Strada protein_coding processed_transcript MGP_C3HHeJ_T0032758.1 MGP_C3HHeJ_G0019047.1 mouse_genomes_project 11 108202318 108232603 - MGP_C3HHeJ_P0032758 Strada protein_coding protein_coding MGP_C3HHeJ_T0032759.1 MGP_C3HHeJ_G0019047.1 mouse_genomes_project 11 108202815 108232629 - MGP_C3HHeJ_P0032759 Strada protein_coding protein_coding MGP_C3HHeJ_T0032760.1 MGP_C3HHeJ_G0019047.1 mouse_genomes_project 11 108207442 108232606 - MGP_C3HHeJ_P0032760 Strada protein_coding protein_coding MGP_C3HHeJ_T0032761.1 MGP_C3HHeJ_G0019047.1 mouse_genomes_project 11 108223023 108232639 - MGP_C3HHeJ_P0032761 Strada protein_coding protein_coding MGP_C3HHeJ_T0006269.1 MGP_C3HHeJ_G0005219.1 mouse_genomes_project 11 111842336 111868283 + Gm11685 lincRNA lincRNA MGP_C3HHeJ_T0012599.1 MGP_C3HHeJ_G0010703.1 mouse_genomes_project 11 96748363 96748539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097992.1 MGP_C3HHeJ_G0036204.1 mouse_genomes_project 11 56964989 56965108 + n-R5s69 rRNA rRNA MGP_C3HHeJ_T0033333.1 MGP_C3HHeJ_G0019164.1 mouse_genomes_project 11 118740006 118749275 - MGP_C3HHeJ_P0033333 Trim65 protein_coding protein_coding MGP_C3HHeJ_T0033334.1 MGP_C3HHeJ_G0019164.1 mouse_genomes_project 11 118742861 118749279 - Trim65 protein_coding processed_transcript MGP_C3HHeJ_T0033335.1 MGP_C3HHeJ_G0019164.1 mouse_genomes_project 11 118742861 118749277 - MGP_C3HHeJ_P0033335 Trim65 protein_coding protein_coding MGP_C3HHeJ_T0030779.1 MGP_C3HHeJ_G0018536.1 mouse_genomes_project 11 78825142 78826777 + MGP_C3HHeJ_P0030779 Sebox protein_coding protein_coding MGP_C3HHeJ_T0030780.1 MGP_C3HHeJ_G0018536.1 mouse_genomes_project 11 78825194 78826770 + MGP_C3HHeJ_P0030780 Sebox protein_coding protein_coding MGP_C3HHeJ_T0029338.1 MGP_C3HHeJ_G0018200.1 mouse_genomes_project 11 61306424 61392293 - MGP_C3HHeJ_P0029338 Ulk2 protein_coding protein_coding MGP_C3HHeJ_T0029339.1 MGP_C3HHeJ_G0018200.1 mouse_genomes_project 11 61308277 61391722 - Ulk2 protein_coding processed_transcript MGP_C3HHeJ_T0029340.1 MGP_C3HHeJ_G0018200.1 mouse_genomes_project 11 61332973 61337093 - Ulk2 protein_coding processed_transcript MGP_C3HHeJ_T0012433.1 MGP_C3HHeJ_G0010537.1 mouse_genomes_project 11 28343286 28346841 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032681.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106518654 106557894 + MGP_C3HHeJ_P0032681 Myl4 protein_coding protein_coding MGP_C3HHeJ_T0032682.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106544287 106556426 + MGP_C3HHeJ_P0032682 Myl4 protein_coding protein_coding MGP_C3HHeJ_T0032683.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106547599 106557894 + MGP_C3HHeJ_P0032683 Myl4 protein_coding protein_coding MGP_C3HHeJ_T0032684.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106547631 106555692 + MGP_C3HHeJ_P0032684 Myl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032685.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106547895 106557894 + MGP_C3HHeJ_P0032685 Myl4 protein_coding protein_coding MGP_C3HHeJ_T0032686.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106550943 106557888 + Myl4 protein_coding retained_intron MGP_C3HHeJ_T0032687.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106552656 106557025 + Myl4 protein_coding retained_intron MGP_C3HHeJ_T0032688.1 MGP_C3HHeJ_G0019028.1 mouse_genomes_project 11 106555641 106566432 + MGP_C3HHeJ_P0032688 Myl4 protein_coding protein_coding MGP_C3HHeJ_T0012529.1 MGP_C3HHeJ_G0010633.1 mouse_genomes_project 11 68885086 68885257 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032520.1 MGP_C3HHeJ_G0018992.1 mouse_genomes_project 11 104536823 104548344 + MGP_C3HHeJ_P0032520 Meioc protein_coding protein_coding MGP_C3HHeJ_T0032521.1 MGP_C3HHeJ_G0018992.1 mouse_genomes_project 11 104538697 104555285 + MGP_C3HHeJ_P0032521 Meioc protein_coding protein_coding MGP_C3HHeJ_T0032522.1 MGP_C3HHeJ_G0018992.1 mouse_genomes_project 11 104538732 104547160 + Meioc protein_coding processed_transcript MGP_C3HHeJ_T0029593.1 MGP_C3HHeJ_G0018259.1 mouse_genomes_project 11 68687118 68694348 + MGP_C3HHeJ_P0029593 Rnf222 protein_coding protein_coding MGP_C3HHeJ_T0099993.1 MGP_C3HHeJ_G0038187.1 mouse_genomes_project 11 9941715 9941857 + Gm22156 snoRNA snoRNA MGP_C3HHeJ_T0033455.1 MGP_C3HHeJ_G0019187.1 mouse_genomes_project 11 119394905 119404430 - MGP_C3HHeJ_P0033455 St6galnac1 protein_coding protein_coding MGP_C3HHeJ_T0033085.1 MGP_C3HHeJ_G0019118.1 mouse_genomes_project 11 117527911 117533132 - MGP_C3HHeJ_P0033085 Cd300c2 protein_coding protein_coding MGP_C3HHeJ_T0033086.1 MGP_C3HHeJ_G0019118.1 mouse_genomes_project 11 117527912 117533132 - MGP_C3HHeJ_P0033086 Cd300c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032903.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110595647 111046666 + MGP_C3HHeJ_P0032903 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032904.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110595721 111046665 + MGP_C3HHeJ_P0032904 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032905.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110595732 110642951 + Cep112 protein_coding retained_intron MGP_C3HHeJ_T0032906.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110595746 110611041 + MGP_C3HHeJ_P0032906 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032907.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110595920 110706558 + MGP_C3HHeJ_P0032907 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032908.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110595963 111046666 + MGP_C3HHeJ_P0032908 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032909.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110596071 111046310 + MGP_C3HHeJ_P0032909 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032910.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110676472 111046401 + MGP_C3HHeJ_P0032910 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032911.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110706548 110749667 + Cep112 protein_coding retained_intron MGP_C3HHeJ_T0032912.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110767578 110941028 + MGP_C3HHeJ_P0032912 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032913.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110786548 110842496 + Cep112 protein_coding processed_transcript MGP_C3HHeJ_T0032914.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110820374 111046304 + Cep112 protein_coding processed_transcript MGP_C3HHeJ_T0032915.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110824447 111041925 + Cep112 protein_coding processed_transcript MGP_C3HHeJ_T0032916.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110861873 111046400 + MGP_C3HHeJ_P0032916 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032917.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110861880 111046666 + MGP_C3HHeJ_P0032917 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032918.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110861889 111046405 + MGP_C3HHeJ_P0032918 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0032919.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110895096 110990275 + Cep112 protein_coding processed_transcript MGP_C3HHeJ_T0032920.1 MGP_C3HHeJ_G0019078.1 mouse_genomes_project 11 110935481 111045413 + MGP_C3HHeJ_P0032920 Cep112 protein_coding protein_coding MGP_C3HHeJ_T0017038.1 MGP_C3HHeJ_G0014973.1 mouse_genomes_project 11 106526424 106534571 - Gm22000 processed_transcript processed_transcript MGP_C3HHeJ_T0003211.1 MGP_C3HHeJ_G0002968.1 mouse_genomes_project 11 98289239 98294606 - Gm11525 antisense antisense MGP_C3HHeJ_T0030444.1 MGP_C3HHeJ_G0018467.1 mouse_genomes_project 11 75641257 75665696 + MGP_C3HHeJ_P0030444 Prpf8 protein_coding protein_coding MGP_C3HHeJ_T0030445.1 MGP_C3HHeJ_G0018467.1 mouse_genomes_project 11 75641261 75665698 + MGP_C3HHeJ_P0030445 Prpf8 protein_coding protein_coding MGP_C3HHeJ_T0030446.1 MGP_C3HHeJ_G0018467.1 mouse_genomes_project 11 75641296 75650251 + MGP_C3HHeJ_P0030446 Prpf8 protein_coding protein_coding MGP_C3HHeJ_T0030447.1 MGP_C3HHeJ_G0018467.1 mouse_genomes_project 11 75646676 75648366 + Prpf8 protein_coding retained_intron MGP_C3HHeJ_T0012528.1 MGP_C3HHeJ_G0010632.1 mouse_genomes_project 11 67855763 67856148 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100034.1 MGP_C3HHeJ_G0038228.1 mouse_genomes_project 11 78486668 78486739 - Snord4a snoRNA snoRNA MGP_C3HHeJ_T0027692.1 MGP_C3HHeJ_G0017767.1 mouse_genomes_project 11 2951933 2964029 + MGP_C3HHeJ_P0027692 Ykt6 protein_coding protein_coding MGP_C3HHeJ_T0027693.1 MGP_C3HHeJ_G0017767.1 mouse_genomes_project 11 2955544 2959452 + Ykt6 protein_coding processed_transcript MGP_C3HHeJ_T0027953.1 MGP_C3HHeJ_G0017829.1 mouse_genomes_project 11 19031431 19125058 + MGP_C3HHeJ_P0027953 Wdpcp protein_coding protein_coding MGP_C3HHeJ_T0027954.1 MGP_C3HHeJ_G0017829.1 mouse_genomes_project 11 19031431 19375120 + MGP_C3HHeJ_P0027954 Wdpcp protein_coding protein_coding MGP_C3HHeJ_T0027955.1 MGP_C3HHeJ_G0017829.1 mouse_genomes_project 11 19031501 19160469 + Wdpcp protein_coding processed_transcript MGP_C3HHeJ_T0027956.1 MGP_C3HHeJ_G0017829.1 mouse_genomes_project 11 19152481 19176151 + Wdpcp protein_coding processed_transcript MGP_C3HHeJ_T0027957.1 MGP_C3HHeJ_G0017829.1 mouse_genomes_project 11 19158029 19215650 + Wdpcp protein_coding processed_transcript MGP_C3HHeJ_T0027958.1 MGP_C3HHeJ_G0017829.1 mouse_genomes_project 11 19287155 19291961 + Wdpcp protein_coding processed_transcript MGP_C3HHeJ_T0029527.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67180094 67402003 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0029528.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67278514 67316569 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0029529.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67317536 67338041 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0029530.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67317572 67429018 + MGP_C3HHeJ_P0029530 Gas7 protein_coding protein_coding MGP_C3HHeJ_T0029531.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67329150 67420232 + MGP_C3HHeJ_P0029531 Gas7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0029532.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67329185 67407224 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0029533.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67329195 67401988 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0029534.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67389198 67420469 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0029536.1 MGP_C3HHeJ_G0018244.1 mouse_genomes_project 11 67418952 67420345 + Gas7 protein_coding processed_transcript MGP_C3HHeJ_T0028099.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27140222 27277083 + MGP_C3HHeJ_P0028099 Ccdc88a protein_coding protein_coding MGP_C3HHeJ_T0028100.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27140341 27189610 + MGP_C3HHeJ_P0028100 Ccdc88a protein_coding protein_coding MGP_C3HHeJ_T0028101.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27221617 27226300 + Ccdc88a protein_coding processed_transcript MGP_C3HHeJ_T0028102.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27228964 27248288 + MGP_C3HHeJ_P0028102 Ccdc88a protein_coding protein_coding MGP_C3HHeJ_T0028103.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27235426 27270399 + MGP_C3HHeJ_P0028103 Ccdc88a protein_coding protein_coding MGP_C3HHeJ_T0028104.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27251897 27269811 + MGP_C3HHeJ_P0028104 Ccdc88a protein_coding protein_coding MGP_C3HHeJ_T0028105.1 MGP_C3HHeJ_G0017860.1 mouse_genomes_project 11 27260188 27264126 + Ccdc88a protein_coding processed_transcript MGP_C3HHeJ_T0031445.1 MGP_C3HHeJ_G0018710.1 mouse_genomes_project 11 95535320 95588300 - MGP_C3HHeJ_P0031445 Abcc3 protein_coding protein_coding MGP_C3HHeJ_T0031446.1 MGP_C3HHeJ_G0018710.1 mouse_genomes_project 11 95535323 95588300 - MGP_C3HHeJ_P0031446 Abcc3 protein_coding protein_coding MGP_C3HHeJ_T0031447.1 MGP_C3HHeJ_G0018710.1 mouse_genomes_project 11 95535678 95543254 - Abcc3 protein_coding processed_transcript MGP_C3HHeJ_T0031448.1 MGP_C3HHeJ_G0018710.1 mouse_genomes_project 11 95556196 95562215 - Abcc3 protein_coding processed_transcript MGP_C3HHeJ_T0031449.1 MGP_C3HHeJ_G0018710.1 mouse_genomes_project 11 95556844 95588244 - Abcc3 protein_coding processed_transcript MGP_C3HHeJ_T0031450.1 MGP_C3HHeJ_G0018710.1 mouse_genomes_project 11 95568871 95588321 - Abcc3 protein_coding processed_transcript MGP_C3HHeJ_T0031411.1 MGP_C3HHeJ_G0018701.1 mouse_genomes_project 11 95125392 95131791 - MGP_C3HHeJ_P0031411 Nme2 protein_coding protein_coding MGP_C3HHeJ_T0031412.1 MGP_C3HHeJ_G0018701.1 mouse_genomes_project 11 95125395 95131315 - MGP_C3HHeJ_P0031412 Nme2 protein_coding protein_coding MGP_C3HHeJ_T0009647.1 MGP_C3HHeJ_G0007780.1 mouse_genomes_project 11 97281036 97281128 - Mir3063 miRNA miRNA MGP_C3HHeJ_T0028304.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34099511 35364224 - MGP_C3HHeJ_P0028304 Tenm2 protein_coding protein_coding MGP_C3HHeJ_T0028305.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34100522 35060252 - MGP_C3HHeJ_P0028305 Tenm2 protein_coding protein_coding MGP_C3HHeJ_T0028306.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34100895 35060252 - MGP_C3HHeJ_P0028306 Tenm2 protein_coding protein_coding MGP_C3HHeJ_T0028307.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34232100 35060252 - Tenm2 protein_coding processed_transcript MGP_C3HHeJ_T0028308.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34233372 34780295 - Tenm2 protein_coding processed_transcript MGP_C3HHeJ_T0028309.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34259210 34596403 - Tenm2 protein_coding processed_transcript MGP_C3HHeJ_T0028310.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 34483813 34531180 - Tenm2 protein_coding processed_transcript MGP_C3HHeJ_T0028311.1 MGP_C3HHeJ_G0017914.1 mouse_genomes_project 11 35060290 35364306 - Tenm2 protein_coding processed_transcript MGP_C3HHeJ_T0003189.1 MGP_C3HHeJ_G0002952.1 mouse_genomes_project 11 89236769 89244463 + Gm15893 antisense antisense MGP_C3HHeJ_T0100045.1 MGP_C3HHeJ_G0038239.1 mouse_genomes_project 11 100216519 100216623 - Gm22059 snoRNA snoRNA MGP_C3HHeJ_T0030920.1 MGP_C3HHeJ_G0018572.1 mouse_genomes_project 11 81344637 82455472 - MGP_C3HHeJ_P0030920 Asic2 protein_coding protein_coding MGP_C3HHeJ_T0030921.1 MGP_C3HHeJ_G0018572.1 mouse_genomes_project 11 81344637 81620665 - MGP_C3HHeJ_P0030921 Asic2 protein_coding protein_coding MGP_C3HHeJ_T0003255.1 MGP_C3HHeJ_G0003005.1 mouse_genomes_project 11 109254709 109268403 + Gm11715 antisense antisense MGP_C3HHeJ_T0033476.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119481473 119505157 + MGP_C3HHeJ_P0033476 Mfsd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033477.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482328 119487965 + Mfsd11 protein_coding retained_intron MGP_C3HHeJ_T0033478.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482508 119483093 + Mfsd11 protein_coding processed_transcript MGP_C3HHeJ_T0033479.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482796 119505164 + MGP_C3HHeJ_P0033479 Mfsd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033480.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482813 119483291 + Mfsd11 protein_coding retained_intron MGP_C3HHeJ_T0033481.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482854 119505902 + MGP_C3HHeJ_P0033481 Mfsd11 protein_coding protein_coding MGP_C3HHeJ_T0033482.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482863 119483751 + Mfsd11 protein_coding retained_intron MGP_C3HHeJ_T0033483.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119482929 119505902 + MGP_C3HHeJ_P0033483 Mfsd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033484.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119483060 119504612 + MGP_C3HHeJ_P0033484 Mfsd11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033485.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119483112 119504390 + MGP_C3HHeJ_P0033485 Mfsd11 protein_coding protein_coding MGP_C3HHeJ_T0033486.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119487989 119492193 + Mfsd11 protein_coding retained_intron MGP_C3HHeJ_T0033487.1 MGP_C3HHeJ_G0019192.1 mouse_genomes_project 11 119498913 119504282 + Mfsd11 protein_coding processed_transcript MGP_C3HHeJ_T0032088.1 MGP_C3HHeJ_G0018907.1 mouse_genomes_project 11 102137407 102153190 + MGP_C3HHeJ_P0032088 Klhl10 protein_coding protein_coding MGP_C3HHeJ_T0032089.1 MGP_C3HHeJ_G0018907.1 mouse_genomes_project 11 102137417 102141496 + MGP_C3HHeJ_P0032089 Klhl10 protein_coding protein_coding MGP_C3HHeJ_T0033801.1 MGP_C3HHeJ_G0019256.1 mouse_genomes_project 11 123370291 123378577 + MGP_C3HHeJ_P0033801 Gcgr protein_coding protein_coding MGP_C3HHeJ_T0033802.1 MGP_C3HHeJ_G0019256.1 mouse_genomes_project 11 123370336 123378579 + Gcgr protein_coding processed_transcript MGP_C3HHeJ_T0033803.1 MGP_C3HHeJ_G0019256.1 mouse_genomes_project 11 123370366 123378576 + Gcgr protein_coding processed_transcript MGP_C3HHeJ_T0033804.1 MGP_C3HHeJ_G0019256.1 mouse_genomes_project 11 123374272 123376302 + Gcgr protein_coding processed_transcript MGP_C3HHeJ_T0027719.1 MGP_C3HHeJ_G0017773.1 mouse_genomes_project 11 3268752 3273259 - MGP_C3HHeJ_P0027719 Tmed4 protein_coding protein_coding MGP_C3HHeJ_T0027720.1 MGP_C3HHeJ_G0017773.1 mouse_genomes_project 11 3270049 3273259 - Tmed4 protein_coding retained_intron MGP_C3HHeJ_T0027721.1 MGP_C3HHeJ_G0017773.1 mouse_genomes_project 11 3272129 3273254 - MGP_C3HHeJ_P0027721 Tmed4 protein_coding protein_coding MGP_C3HHeJ_T0101121.1 MGP_C3HHeJ_G0039294.1 mouse_genomes_project 11 109662992 109663367 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0012502.1 MGP_C3HHeJ_G0010606.1 mouse_genomes_project 11 57666514 57666733 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030564.1 MGP_C3HHeJ_G0018493.1 mouse_genomes_project 11 77127803 77142683 + MGP_C3HHeJ_P0030564 Tmigd1 protein_coding protein_coding MGP_C3HHeJ_T0030565.1 MGP_C3HHeJ_G0018493.1 mouse_genomes_project 11 77130119 77135549 + MGP_C3HHeJ_P0030565 Tmigd1 protein_coding protein_coding MGP_C3HHeJ_T0030566.1 MGP_C3HHeJ_G0018493.1 mouse_genomes_project 11 77130189 77142682 + MGP_C3HHeJ_P0030566 Tmigd1 protein_coding protein_coding MGP_C3HHeJ_T0030567.1 MGP_C3HHeJ_G0018493.1 mouse_genomes_project 11 77130206 77142193 + Tmigd1 protein_coding processed_transcript MGP_C3HHeJ_T0003125.1 MGP_C3HHeJ_G0002901.1 mouse_genomes_project 11 62092988 62093963 + Gm12949 antisense antisense MGP_C3HHeJ_T0031743.1 MGP_C3HHeJ_G0018786.1 mouse_genomes_project 11 98824935 98913484 + MGP_C3HHeJ_P0031743 Arhgap23 protein_coding protein_coding MGP_C3HHeJ_T0031744.1 MGP_C3HHeJ_G0018786.1 mouse_genomes_project 11 98825007 98902661 + MGP_C3HHeJ_P0031744 Arhgap23 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031745.1 MGP_C3HHeJ_G0018786.1 mouse_genomes_project 11 98847536 98855480 + Arhgap23 protein_coding processed_transcript MGP_C3HHeJ_T0031746.1 MGP_C3HHeJ_G0018786.1 mouse_genomes_project 11 98861411 98913482 + MGP_C3HHeJ_P0031746 Arhgap23 protein_coding protein_coding MGP_C3HHeJ_T0031747.1 MGP_C3HHeJ_G0018786.1 mouse_genomes_project 11 98863381 98913484 + MGP_C3HHeJ_P0031747 Arhgap23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031749.1 MGP_C3HHeJ_G0018786.1 mouse_genomes_project 11 98902141 98913480 + MGP_C3HHeJ_P0031749 Arhgap23 protein_coding protein_coding MGP_C3HHeJ_T0030425.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75554703 75567869 - MGP_C3HHeJ_P0030425 Serpinf1 protein_coding protein_coding MGP_C3HHeJ_T0030426.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75554998 75562929 - MGP_C3HHeJ_P0030426 Serpinf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030427.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75555155 75560663 - MGP_C3HHeJ_P0030427 Serpinf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030428.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75558846 75567754 - MGP_C3HHeJ_P0030428 Serpinf1 protein_coding protein_coding MGP_C3HHeJ_T0030429.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75558905 75560128 - Serpinf1 protein_coding retained_intron MGP_C3HHeJ_T0030430.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75559853 75567723 - MGP_C3HHeJ_P0030430 Serpinf1 protein_coding protein_coding MGP_C3HHeJ_T0030431.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75560402 75567720 - MGP_C3HHeJ_P0030431 Serpinf1 protein_coding protein_coding MGP_C3HHeJ_T0030432.1 MGP_C3HHeJ_G0018463.1 mouse_genomes_project 11 75561248 75563230 - MGP_C3HHeJ_P0030432 Serpinf1 protein_coding protein_coding MGP_C3HHeJ_T0030836.1 MGP_C3HHeJ_G0018552.1 mouse_genomes_project 11 79903815 79921700 - MGP_C3HHeJ_P0030836 Gm21975 protein_coding protein_coding MGP_C3HHeJ_T0030837.1 MGP_C3HHeJ_G0018552.1 mouse_genomes_project 11 79903815 79921670 - MGP_C3HHeJ_P0030837 Gm21975 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030309.1 MGP_C3HHeJ_G0018419.1 mouse_genomes_project 11 73498698 73499758 - MGP_C3HHeJ_P0030309 Olfr380 protein_coding protein_coding MGP_C3HHeJ_T0029514.1 MGP_C3HHeJ_G0018240.1 mouse_genomes_project 11 66913305 66942032 + MGP_C3HHeJ_P0029514 Myh1 protein_coding protein_coding MGP_C3HHeJ_T0029515.1 MGP_C3HHeJ_G0018240.1 mouse_genomes_project 11 66913364 66941954 + MGP_C3HHeJ_P0029515 Myh1 protein_coding protein_coding MGP_C3HHeJ_T0029516.1 MGP_C3HHeJ_G0018240.1 mouse_genomes_project 11 66913391 66917292 + MGP_C3HHeJ_P0029516 Myh1 protein_coding protein_coding MGP_C3HHeJ_T0029517.1 MGP_C3HHeJ_G0018240.1 mouse_genomes_project 11 66913659 66942030 + MGP_C3HHeJ_P0029517 Myh1 protein_coding protein_coding MGP_C3HHeJ_T0028487.1 MGP_C3HHeJ_G0017964.1 mouse_genomes_project 11 47488482 47493891 - MGP_C3HHeJ_P0028487 protein_coding protein_coding MGP_C3HHeJ_T0029044.1 MGP_C3HHeJ_G0018132.1 mouse_genomes_project 11 58182079 58196661 + MGP_C3HHeJ_P0029044 2810021J22Rik protein_coding protein_coding MGP_C3HHeJ_T0029045.1 MGP_C3HHeJ_G0018132.1 mouse_genomes_project 11 58182130 58191372 + MGP_C3HHeJ_P0029045 2810021J22Rik protein_coding protein_coding MGP_C3HHeJ_T0003274.1 MGP_C3HHeJ_G0003020.1 mouse_genomes_project 11 118027700 118029110 - Gm11695 antisense antisense MGP_C3HHeJ_T0027490.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822371 - MGP_C3HHeJ_P0027490 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0027491.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822548 - MGP_C3HHeJ_P0027491 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0027492.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822747 - MGP_C3HHeJ_P0027492 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0027493.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822666 - MGP_C3HHeJ_P0027493 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0027494.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822632 - MGP_C3HHeJ_P0027494 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0027495.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822583 - MGP_C3HHeJ_P0027495 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0027496.1 MGP_C3HHeJ_G0017721.1 mouse_genomes_project 11 806153 822386 - MGP_C3HHeJ_P0027496 Tcn2 protein_coding protein_coding MGP_C3HHeJ_T0012552.1 MGP_C3HHeJ_G0010656.1 mouse_genomes_project 11 75572922 75573322 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012492.1 MGP_C3HHeJ_G0010596.1 mouse_genomes_project 11 54068416 54068870 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027666.1 MGP_C3HHeJ_G0017759.1 mouse_genomes_project 11 2697037 2723549 - MGP_C3HHeJ_P0027666 Urgcp protein_coding protein_coding MGP_C3HHeJ_T0027667.1 MGP_C3HHeJ_G0017759.1 mouse_genomes_project 11 2699389 2723585 - MGP_C3HHeJ_P0027667 Urgcp protein_coding protein_coding MGP_C3HHeJ_T0003117.1 MGP_C3HHeJ_G0002895.1 mouse_genomes_project 11 59326184 59328287 - antisense antisense MGP_C3HHeJ_T0003118.1 MGP_C3HHeJ_G0002895.1 mouse_genomes_project 11 59326184 59327386 - antisense antisense MGP_C3HHeJ_T0003119.1 MGP_C3HHeJ_G0002895.1 mouse_genomes_project 11 59326184 59328286 - antisense antisense MGP_C3HHeJ_T0009598.1 MGP_C3HHeJ_G0007731.1 mouse_genomes_project 11 58284246 58284384 - Gm44313 miRNA miRNA MGP_C3HHeJ_T0101631.1 MGP_C3HHeJ_G0039597.1 mouse_genomes_project 11 49762709 49763710 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098778.1 MGP_C3HHeJ_G0036972.1 mouse_genomes_project 11 60849638 60849745 + Gm25929 snRNA snRNA MGP_C3HHeJ_T0030315.1 MGP_C3HHeJ_G0018424.1 mouse_genomes_project 11 73766260 73804471 + MGP_C3HHeJ_P0030315 Zfp735 protein_coding protein_coding MGP_C3HHeJ_T0030316.1 MGP_C3HHeJ_G0018424.1 mouse_genomes_project 11 73766281 73801502 + Zfp735 protein_coding processed_transcript MGP_C3HHeJ_T0030317.1 MGP_C3HHeJ_G0018424.1 mouse_genomes_project 11 73772845 73801434 + Zfp735 protein_coding processed_transcript MGP_C3HHeJ_T0028505.1 MGP_C3HHeJ_G0017973.1 mouse_genomes_project 11 47843859 47844798 + MGP_C3HHeJ_P0028505 Olfr1394 protein_coding protein_coding MGP_C3HHeJ_T0028769.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52373383 52450343 + MGP_C3HHeJ_P0028769 Aff4 protein_coding protein_coding MGP_C3HHeJ_T0028770.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52392720 52397763 + MGP_C3HHeJ_P0028770 Aff4 protein_coding protein_coding MGP_C3HHeJ_T0028771.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52393277 52401181 + Aff4 protein_coding retained_intron MGP_C3HHeJ_T0028772.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52397822 52400953 + Aff4 protein_coding retained_intron MGP_C3HHeJ_T0028773.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52398208 52423998 + MGP_C3HHeJ_P0028773 Aff4 protein_coding protein_coding MGP_C3HHeJ_T0028774.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52398216 52426197 + Aff4 protein_coding processed_transcript MGP_C3HHeJ_T0028775.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52432135 52438055 + Aff4 protein_coding retained_intron MGP_C3HHeJ_T0028776.1 MGP_C3HHeJ_G0018040.1 mouse_genomes_project 11 52439210 52444346 + Aff4 protein_coding retained_intron MGP_C3HHeJ_T0033859.1 MGP_C3HHeJ_G0019269.1 mouse_genomes_project 11 123496517 123503336 - MGP_C3HHeJ_P0033859 Notum protein_coding protein_coding MGP_C3HHeJ_T0033860.1 MGP_C3HHeJ_G0019269.1 mouse_genomes_project 11 123496517 123503559 - MGP_C3HHeJ_P0033860 Notum protein_coding protein_coding MGP_C3HHeJ_T0033861.1 MGP_C3HHeJ_G0019269.1 mouse_genomes_project 11 123496574 123500774 - Notum protein_coding retained_intron MGP_C3HHeJ_T0033862.1 MGP_C3HHeJ_G0019269.1 mouse_genomes_project 11 123500292 123503905 - MGP_C3HHeJ_P0033862 Notum protein_coding protein_coding MGP_C3HHeJ_T0003080.1 MGP_C3HHeJ_G0002862.1 mouse_genomes_project 11 43100989 43104143 - Gm12158 antisense antisense MGP_C3HHeJ_T0012637.1 MGP_C3HHeJ_G0010741.1 mouse_genomes_project 11 110593723 110594207 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033122.1 MGP_C3HHeJ_G0019127.1 mouse_genomes_project 11 117836259 117855853 - MGP_C3HHeJ_P0033122 Fads6 protein_coding protein_coding MGP_C3HHeJ_T0033123.1 MGP_C3HHeJ_G0019127.1 mouse_genomes_project 11 117851644 117856002 - Fads6 protein_coding processed_transcript MGP_C3HHeJ_T0031998.1 MGP_C3HHeJ_G0018854.1 mouse_genomes_project 11 101120797 101121097 - MGP_C3HHeJ_P0031998 Gm11939 protein_coding protein_coding MGP_C3HHeJ_T0009662.1 MGP_C3HHeJ_G0007795.1 mouse_genomes_project 11 102754302 102754372 + Mir6928 miRNA miRNA MGP_C3HHeJ_T0030239.1 MGP_C3HHeJ_G0018398.1 mouse_genomes_project 11 72791689 72813195 - MGP_C3HHeJ_P0030239 Cyb5d2 protein_coding protein_coding MGP_C3HHeJ_T0030240.1 MGP_C3HHeJ_G0018398.1 mouse_genomes_project 11 72793196 72813041 - MGP_C3HHeJ_P0030240 Cyb5d2 protein_coding protein_coding MGP_C3HHeJ_T0030241.1 MGP_C3HHeJ_G0018398.1 mouse_genomes_project 11 72793335 72813433 - Cyb5d2 protein_coding processed_transcript MGP_C3HHeJ_T0030242.1 MGP_C3HHeJ_G0018398.1 mouse_genomes_project 11 72810227 72813180 - Cyb5d2 protein_coding retained_intron MGP_C3HHeJ_T0029214.1 MGP_C3HHeJ_G0018176.1 mouse_genomes_project 11 60199382 60203944 + MGP_C3HHeJ_P0029214 Mief2 protein_coding protein_coding MGP_C3HHeJ_T0029215.1 MGP_C3HHeJ_G0018176.1 mouse_genomes_project 11 60199427 60201993 + Mief2 protein_coding retained_intron MGP_C3HHeJ_T0029216.1 MGP_C3HHeJ_G0018176.1 mouse_genomes_project 11 60199429 60201647 + Mief2 protein_coding processed_transcript MGP_C3HHeJ_T0012419.1 MGP_C3HHeJ_G0010523.1 mouse_genomes_project 11 24472349 24484971 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000822.1 MGP_C3HHeJ_G0000763.1 mouse_genomes_project 11 123421829 123422997 + TEC TEC MGP_C3HHeJ_T0027791.1 MGP_C3HHeJ_G0017791.1 mouse_genomes_project 11 6101925 6120451 - MGP_C3HHeJ_P0027791 Hus1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027792.1 MGP_C3HHeJ_G0017791.1 mouse_genomes_project 11 6101925 6120482 - MGP_C3HHeJ_P0027792 Hus1 protein_coding protein_coding MGP_C3HHeJ_T0027793.1 MGP_C3HHeJ_G0017791.1 mouse_genomes_project 11 6104144 6120419 - Hus1 protein_coding retained_intron MGP_C3HHeJ_T0027794.1 MGP_C3HHeJ_G0017791.1 mouse_genomes_project 11 6106128 6120455 - Hus1 protein_coding retained_intron MGP_C3HHeJ_T0027795.1 MGP_C3HHeJ_G0017791.1 mouse_genomes_project 11 6107536 6119973 - Hus1 protein_coding retained_intron MGP_C3HHeJ_T0027796.1 MGP_C3HHeJ_G0017791.1 mouse_genomes_project 11 6115266 6120419 - Hus1 protein_coding processed_transcript MGP_C3HHeJ_T0098776.1 MGP_C3HHeJ_G0036970.1 mouse_genomes_project 11 56943531 56943634 + Gm24582 snRNA snRNA MGP_C3HHeJ_T0033963.1 MGP_C3HHeJ_G0019286.1 mouse_genomes_project 11 123997740 124000203 - MGP_C3HHeJ_P0033963 Tex19.2 protein_coding protein_coding MGP_C3HHeJ_T0032274.1 MGP_C3HHeJ_G0018947.1 mouse_genomes_project 11 103076073 103084893 + MGP_C3HHeJ_P0032274 Aoc3 protein_coding protein_coding MGP_C3HHeJ_T0032275.1 MGP_C3HHeJ_G0018947.1 mouse_genomes_project 11 103076537 103088348 + MGP_C3HHeJ_P0032275 Aoc3 protein_coding protein_coding MGP_C3HHeJ_T0029042.1 MGP_C3HHeJ_G0018131.1 mouse_genomes_project 11 58162104 58166300 + Gm12258 protein_coding processed_transcript MGP_C3HHeJ_T0029043.1 MGP_C3HHeJ_G0018131.1 mouse_genomes_project 11 58162104 58176847 + MGP_C3HHeJ_P0029043 Gm12258 protein_coding protein_coding MGP_C3HHeJ_T0017013.1 MGP_C3HHeJ_G0014955.1 mouse_genomes_project 11 95880735 95890962 + Gm11542 processed_transcript processed_transcript MGP_C3HHeJ_T0028462.1 MGP_C3HHeJ_G0017957.1 mouse_genomes_project 11 45414985 46099513 - MGP_C3HHeJ_P0028462 Sgcd protein_coding protein_coding MGP_C3HHeJ_T0028463.1 MGP_C3HHeJ_G0017957.1 mouse_genomes_project 11 45496063 45905993 - MGP_C3HHeJ_P0028463 Sgcd protein_coding protein_coding MGP_C3HHeJ_T0028464.1 MGP_C3HHeJ_G0017957.1 mouse_genomes_project 11 45877029 46158917 - Sgcd protein_coding processed_transcript MGP_C3HHeJ_T0028465.1 MGP_C3HHeJ_G0017957.1 mouse_genomes_project 11 46099352 46530848 - Sgcd protein_coding processed_transcript MGP_C3HHeJ_T0028967.1 MGP_C3HHeJ_G0018093.1 mouse_genomes_project 11 57241263 57297177 + MGP_C3HHeJ_P0028967 Larp1 protein_coding protein_coding MGP_C3HHeJ_T0028968.1 MGP_C3HHeJ_G0018093.1 mouse_genomes_project 11 57241263 57297177 + MGP_C3HHeJ_P0028968 Larp1 protein_coding protein_coding MGP_C3HHeJ_T0028969.1 MGP_C3HHeJ_G0018093.1 mouse_genomes_project 11 57276792 57278192 + Larp1 protein_coding retained_intron MGP_C3HHeJ_T0032337.1 MGP_C3HHeJ_G0018962.1 mouse_genomes_project 11 103537106 103539883 + Dhx8 protein_coding retained_intron MGP_C3HHeJ_T0032338.1 MGP_C3HHeJ_G0018962.1 mouse_genomes_project 11 103537137 103580854 + MGP_C3HHeJ_P0032338 Dhx8 protein_coding protein_coding MGP_C3HHeJ_T0032339.1 MGP_C3HHeJ_G0018962.1 mouse_genomes_project 11 103537216 103538625 + Dhx8 protein_coding retained_intron MGP_C3HHeJ_T0032340.1 MGP_C3HHeJ_G0018962.1 mouse_genomes_project 11 103537228 103580303 + MGP_C3HHeJ_P0032340 Dhx8 protein_coding protein_coding MGP_C3HHeJ_T0032341.1 MGP_C3HHeJ_G0018962.1 mouse_genomes_project 11 103560572 103561968 + Dhx8 protein_coding retained_intron MGP_C3HHeJ_T0100058.1 MGP_C3HHeJ_G0038252.1 mouse_genomes_project 11 123906257 123906382 + Gm22152 snoRNA snoRNA MGP_C3HHeJ_T0031804.1 MGP_C3HHeJ_G0018799.1 mouse_genomes_project 11 99292830 99294557 - Fbxo47 protein_coding retained_intron MGP_C3HHeJ_T0031805.1 MGP_C3HHeJ_G0018799.1 mouse_genomes_project 11 99292830 99324086 - MGP_C3HHeJ_P0031805 Fbxo47 protein_coding protein_coding MGP_C3HHeJ_T0031806.1 MGP_C3HHeJ_G0018799.1 mouse_genomes_project 11 99293380 99319504 - MGP_C3HHeJ_P0031806 Fbxo47 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028720.1 MGP_C3HHeJ_G0018028.1 mouse_genomes_project 11 50733394 50780486 - MGP_C3HHeJ_P0028720 Jade2 protein_coding protein_coding MGP_C3HHeJ_T0028721.1 MGP_C3HHeJ_G0018028.1 mouse_genomes_project 11 50763143 50780560 - Jade2 protein_coding processed_transcript MGP_C3HHeJ_T0028058.1 MGP_C3HHeJ_G0017852.1 mouse_genomes_project 11 24013151 24090942 + MGP_C3HHeJ_P0028058 Fancl protein_coding protein_coding MGP_C3HHeJ_T0028059.1 MGP_C3HHeJ_G0017852.1 mouse_genomes_project 11 24014218 24088192 + Fancl protein_coding processed_transcript MGP_C3HHeJ_T0028060.1 MGP_C3HHeJ_G0017852.1 mouse_genomes_project 11 24014218 24053248 + MGP_C3HHeJ_P0028060 Fancl protein_coding protein_coding MGP_C3HHeJ_T0028061.1 MGP_C3HHeJ_G0017852.1 mouse_genomes_project 11 24014218 24090487 + MGP_C3HHeJ_P0028061 Fancl protein_coding protein_coding MGP_C3HHeJ_T0028062.1 MGP_C3HHeJ_G0017852.1 mouse_genomes_project 11 24087402 24090496 + MGP_C3HHeJ_P0028062 Fancl protein_coding protein_coding MGP_C3HHeJ_T0031609.1 MGP_C3HHeJ_G0018751.1 mouse_genomes_project 11 97372983 97391576 - MGP_C3HHeJ_P0031609 Ube2z protein_coding protein_coding MGP_C3HHeJ_T0098820.1 MGP_C3HHeJ_G0037014.1 mouse_genomes_project 11 104415803 104416595 - Gm25337 snRNA snRNA MGP_C3HHeJ_T0031483.1 MGP_C3HHeJ_G0018715.1 mouse_genomes_project 11 95741983 95751382 - Rsad1 protein_coding processed_transcript MGP_C3HHeJ_T0031484.1 MGP_C3HHeJ_G0018715.1 mouse_genomes_project 11 95741983 95751326 - MGP_C3HHeJ_P0031484 Rsad1 protein_coding protein_coding MGP_C3HHeJ_T0031485.1 MGP_C3HHeJ_G0018715.1 mouse_genomes_project 11 95746730 95750922 - Rsad1 protein_coding processed_transcript MGP_C3HHeJ_T0031486.1 MGP_C3HHeJ_G0018715.1 mouse_genomes_project 11 95746795 95750732 - Rsad1 protein_coding processed_transcript MGP_C3HHeJ_T0016963.1 MGP_C3HHeJ_G0014930.1 mouse_genomes_project 11 52600695 52603313 - A430108G06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016964.1 MGP_C3HHeJ_G0014930.1 mouse_genomes_project 11 52600771 52603321 - A430108G06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0031990.1 MGP_C3HHeJ_G0018848.1 mouse_genomes_project 11 100981810 100991513 - MGP_C3HHeJ_P0031990 Krt20 protein_coding protein_coding MGP_C3HHeJ_T0031737.1 MGP_C3HHeJ_G0018783.1 mouse_genomes_project 11 98718544 98734966 + MGP_C3HHeJ_P0031737 Mrpl45 protein_coding protein_coding MGP_C3HHeJ_T0031738.1 MGP_C3HHeJ_G0018783.1 mouse_genomes_project 11 98718736 98724462 + MGP_C3HHeJ_P0031738 Mrpl45 protein_coding protein_coding MGP_C3HHeJ_T0012483.1 MGP_C3HHeJ_G0010587.1 mouse_genomes_project 11 52531361 52531937 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030485.1 MGP_C3HHeJ_G0018474.1 mouse_genomes_project 11 75845228 75872248 + MGP_C3HHeJ_P0030485 Crk protein_coding protein_coding MGP_C3HHeJ_T0030486.1 MGP_C3HHeJ_G0018474.1 mouse_genomes_project 11 75845253 75869839 + MGP_C3HHeJ_P0030486 Crk protein_coding protein_coding MGP_C3HHeJ_T0030487.1 MGP_C3HHeJ_G0018474.1 mouse_genomes_project 11 75845253 75873091 + MGP_C3HHeJ_P0030487 Crk protein_coding protein_coding MGP_C3HHeJ_T0030488.1 MGP_C3HHeJ_G0018474.1 mouse_genomes_project 11 75845280 75866973 + MGP_C3HHeJ_P0030488 Crk protein_coding protein_coding MGP_C3HHeJ_T0030489.1 MGP_C3HHeJ_G0018474.1 mouse_genomes_project 11 75845511 75866921 + MGP_C3HHeJ_P0030489 Crk protein_coding protein_coding MGP_C3HHeJ_T0003139.1 MGP_C3HHeJ_G0002913.1 mouse_genomes_project 11 63704517 63708293 + 2810001G20Rik antisense antisense MGP_C3HHeJ_T0003140.1 MGP_C3HHeJ_G0002913.1 mouse_genomes_project 11 63704615 63708293 + 2810001G20Rik antisense antisense MGP_C3HHeJ_T0028604.1 MGP_C3HHeJ_G0017999.1 mouse_genomes_project 11 49147061 49152299 + MGP_C3HHeJ_P0028604 Cby3 protein_coding protein_coding MGP_C3HHeJ_T0028605.1 MGP_C3HHeJ_G0017999.1 mouse_genomes_project 11 49150360 49152299 + MGP_C3HHeJ_P0028605 Cby3 protein_coding protein_coding MGP_C3HHeJ_T0028718.1 MGP_C3HHeJ_G0018027.1 mouse_genomes_project 11 50676787 50705204 + MGP_C3HHeJ_P0028718 Sar1b protein_coding protein_coding MGP_C3HHeJ_T0028719.1 MGP_C3HHeJ_G0018027.1 mouse_genomes_project 11 50676794 50695643 + Sar1b protein_coding processed_transcript MGP_C3HHeJ_T0006164.1 MGP_C3HHeJ_G0005141.1 mouse_genomes_project 11 51061394 51064644 - 9430098F02Rik lincRNA lincRNA MGP_C3HHeJ_T0029791.1 MGP_C3HHeJ_G0018303.1 mouse_genomes_project 11 69544727 69556287 - MGP_C3HHeJ_P0029791 Tnfsf12 protein_coding protein_coding MGP_C3HHeJ_T0029792.1 MGP_C3HHeJ_G0018303.1 mouse_genomes_project 11 69545817 69555959 - MGP_C3HHeJ_P0029792 Tnfsf12 protein_coding protein_coding MGP_C3HHeJ_T0027887.1 MGP_C3HHeJ_G0017813.1 mouse_genomes_project 11 14546716 14555086 - MGP_C3HHeJ_P0027887 Pno1 protein_coding protein_coding MGP_C3HHeJ_T0027888.1 MGP_C3HHeJ_G0017813.1 mouse_genomes_project 11 14552307 14554572 - Pno1 protein_coding processed_transcript MGP_C3HHeJ_T0029479.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65353684 65456864 - MGP_C3HHeJ_P0029479 Map2k4 protein_coding protein_coding MGP_C3HHeJ_T0029480.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65355774 65385036 - MGP_C3HHeJ_P0029480 Map2k4 protein_coding protein_coding MGP_C3HHeJ_T0029481.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65357169 65362456 - Map2k4 protein_coding processed_transcript MGP_C3HHeJ_T0029482.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65361729 65456852 - MGP_C3HHeJ_P0029482 Map2k4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029483.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65377652 65456853 - MGP_C3HHeJ_P0029483 Map2k4 protein_coding protein_coding MGP_C3HHeJ_T0029484.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65377653 65456852 - MGP_C3HHeJ_P0029484 Map2k4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029485.1 MGP_C3HHeJ_G0018230.1 mouse_genomes_project 11 65384971 65410340 - Map2k4 protein_coding processed_transcript MGP_C3HHeJ_T0003188.1 MGP_C3HHeJ_G0002951.1 mouse_genomes_project 11 88855010 88894665 - Gm11508 antisense antisense MGP_C3HHeJ_T0030100.1 MGP_C3HHeJ_G0018369.1 mouse_genomes_project 11 70733196 70741435 - MGP_C3HHeJ_P0030100 Scimp protein_coding protein_coding MGP_C3HHeJ_T0029847.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69781660 69783988 + Neurl4 protein_coding processed_transcript MGP_C3HHeJ_T0029848.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69782404 69794104 + MGP_C3HHeJ_P0029848 Neurl4 protein_coding protein_coding MGP_C3HHeJ_T0029849.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69782404 69794104 + MGP_C3HHeJ_P0029849 Neurl4 protein_coding protein_coding MGP_C3HHeJ_T0029850.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69782404 69794104 + MGP_C3HHeJ_P0029850 Neurl4 protein_coding protein_coding MGP_C3HHeJ_T0029851.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69782479 69794409 + MGP_C3HHeJ_P0029851 Neurl4 protein_coding protein_coding MGP_C3HHeJ_T0029852.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69782615 69786186 + Neurl4 protein_coding retained_intron MGP_C3HHeJ_T0029853.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69782744 69784503 + Neurl4 protein_coding processed_transcript MGP_C3HHeJ_T0029854.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69783980 69793920 + MGP_C3HHeJ_P0029854 Neurl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029855.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69784623 69789324 + MGP_C3HHeJ_P0029855 Neurl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029856.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69787852 69789110 + Neurl4 protein_coding retained_intron MGP_C3HHeJ_T0029857.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69789223 69790913 + Neurl4 protein_coding retained_intron MGP_C3HHeJ_T0029858.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69789564 69791454 + Neurl4 protein_coding retained_intron MGP_C3HHeJ_T0029859.1 MGP_C3HHeJ_G0018320.1 mouse_genomes_project 11 69791624 69793741 + MGP_C3HHeJ_P0029859 Neurl4 protein_coding protein_coding MGP_C3HHeJ_T0027895.1 MGP_C3HHeJ_G0017815.1 mouse_genomes_project 11 15319705 15334460 - MGP_C3HHeJ_P0027895 Etaa1 protein_coding protein_coding MGP_C3HHeJ_T0028277.1 MGP_C3HHeJ_G0017905.1 mouse_genomes_project 11 32226597 32230360 - MGP_C3HHeJ_P0028277 Foxi1 protein_coding protein_coding MGP_C3HHeJ_T0012540.1 MGP_C3HHeJ_G0010644.1 mouse_genomes_project 11 71024181 71024985 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098773.1 MGP_C3HHeJ_G0036967.1 mouse_genomes_project 11 52416180 52416287 + Gm25930 snRNA snRNA MGP_C3HHeJ_T0031429.1 MGP_C3HHeJ_G0018705.1 mouse_genomes_project 11 95392450 95396444 + MGP_C3HHeJ_P0031429 Tob1 protein_coding protein_coding MGP_C3HHeJ_T0027777.1 MGP_C3HHeJ_G0017785.1 mouse_genomes_project 11 3892262 3894306 - Gm11983 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0027778.1 MGP_C3HHeJ_G0017785.1 mouse_genomes_project 11 3893459 3893777 - MGP_C3HHeJ_P0027778 Gm11983 protein_coding protein_coding MGP_C3HHeJ_T0012359.1 MGP_C3HHeJ_G0010463.1 mouse_genomes_project 11 3462811 3463200 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003132.1 MGP_C3HHeJ_G0002907.1 mouse_genomes_project 11 62344410 62347970 + Zfp286os antisense antisense MGP_C3HHeJ_T0027817.1 MGP_C3HHeJ_G0017797.1 mouse_genomes_project 11 8515522 8695753 - MGP_C3HHeJ_P0027817 Zpbp protein_coding protein_coding MGP_C3HHeJ_T0098755.1 MGP_C3HHeJ_G0036949.1 mouse_genomes_project 11 9309851 9310007 - Gm24036 snRNA snRNA MGP_C3HHeJ_T0097994.1 MGP_C3HHeJ_G0036206.1 mouse_genomes_project 11 67812842 67812968 + Gm26157 rRNA rRNA MGP_C3HHeJ_T0012598.1 MGP_C3HHeJ_G0010702.1 mouse_genomes_project 11 96450339 96451963 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031509.1 MGP_C3HHeJ_G0018723.1 mouse_genomes_project 11 95956918 95958151 + MGP_C3HHeJ_P0031509 Cdc34b protein_coding protein_coding MGP_C3HHeJ_T0031510.1 MGP_C3HHeJ_G0018723.1 mouse_genomes_project 11 95956918 95958170 + MGP_C3HHeJ_P0031510 Cdc34b protein_coding protein_coding MGP_C3HHeJ_T0012656.1 MGP_C3HHeJ_G0010760.1 mouse_genomes_project 11 119193756 119193966 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029459.1 MGP_C3HHeJ_G0018225.1 mouse_genomes_project 11 64058886 64146595 + MGP_C3HHeJ_P0029459 Hs3st3a1 protein_coding protein_coding MGP_C3HHeJ_T0006117.1 MGP_C3HHeJ_G0005102.1 mouse_genomes_project 11 21769713 21785887 + Gm12066 lincRNA lincRNA MGP_C3HHeJ_T0003174.1 MGP_C3HHeJ_G0002942.1 mouse_genomes_project 11 82059219 82065332 + Gm11418 antisense antisense MGP_C3HHeJ_T0031584.1 MGP_C3HHeJ_G0018745.1 mouse_genomes_project 11 97134427 97146714 - MGP_C3HHeJ_P0031584 Abi3 protein_coding protein_coding MGP_C3HHeJ_T0031586.1 MGP_C3HHeJ_G0018745.1 mouse_genomes_project 11 97136302 97146781 - Abi3 protein_coding processed_transcript MGP_C3HHeJ_T0031587.1 MGP_C3HHeJ_G0018745.1 mouse_genomes_project 11 97137069 97140233 - MGP_C3HHeJ_P0031587 Abi3 protein_coding protein_coding MGP_C3HHeJ_T0031588.1 MGP_C3HHeJ_G0018745.1 mouse_genomes_project 11 97141405 97146403 - Abi3 protein_coding processed_transcript MGP_C3HHeJ_T0032557.1 MGP_C3HHeJ_G0018998.1 mouse_genomes_project 11 104779258 104783259 + MGP_C3HHeJ_P0032557 Ccdc103 protein_coding protein_coding MGP_C3HHeJ_T0032558.1 MGP_C3HHeJ_G0018998.1 mouse_genomes_project 11 104779299 104782572 + MGP_C3HHeJ_P0032558 Ccdc103 protein_coding protein_coding MGP_C3HHeJ_T0033998.1 MGP_C3HHeJ_G0019297.1 mouse_genomes_project 11 124327111 124342681 + MGP_C3HHeJ_P0033998 Fn3k protein_coding protein_coding MGP_C3HHeJ_T0033999.1 MGP_C3HHeJ_G0019297.1 mouse_genomes_project 11 124327165 124335180 + MGP_C3HHeJ_P0033999 Fn3k protein_coding protein_coding MGP_C3HHeJ_T0034000.1 MGP_C3HHeJ_G0019297.1 mouse_genomes_project 11 124327166 124335704 + MGP_C3HHeJ_P0034000 Fn3k protein_coding protein_coding MGP_C3HHeJ_T0031718.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98596056 98678281 - MGP_C3HHeJ_P0031718 Npepps protein_coding protein_coding MGP_C3HHeJ_T0031719.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98596056 98681041 - MGP_C3HHeJ_P0031719 Npepps protein_coding protein_coding MGP_C3HHeJ_T0031720.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98596058 98681052 - MGP_C3HHeJ_P0031720 Npepps protein_coding protein_coding MGP_C3HHeJ_T0031721.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98597122 98602689 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031722.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98597147 98635984 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031723.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98597147 98678242 - MGP_C3HHeJ_P0031723 Npepps protein_coding protein_coding MGP_C3HHeJ_T0031724.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98597372 98603522 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031725.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98603763 98614986 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031726.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98613326 98623055 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031727.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98614615 98616984 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031728.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98619809 98627597 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031729.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98622136 98635996 - Npepps protein_coding processed_transcript MGP_C3HHeJ_T0031730.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98622141 98636901 - MGP_C3HHeJ_P0031730 Npepps protein_coding protein_coding MGP_C3HHeJ_T0031731.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98627569 98665717 - MGP_C3HHeJ_P0031731 Npepps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031732.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98636078 98637264 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031733.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98636751 98678218 - MGP_C3HHeJ_P0031733 Npepps protein_coding protein_coding MGP_C3HHeJ_T0031734.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98638545 98678280 - MGP_C3HHeJ_P0031734 Npepps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031735.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98652360 98681040 - Npepps protein_coding retained_intron MGP_C3HHeJ_T0031736.1 MGP_C3HHeJ_G0018782.1 mouse_genomes_project 11 98653031 98665709 - MGP_C3HHeJ_P0031736 Npepps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028153.1 MGP_C3HHeJ_G0017870.1 mouse_genomes_project 11 28323767 28478735 - MGP_C3HHeJ_P0028153 Acyp2 protein_coding protein_coding MGP_C3HHeJ_T0028353.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794214 41801452 - MGP_C3HHeJ_P0028353 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028354.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794228 41801175 - MGP_C3HHeJ_P0028354 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028355.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794229 41798188 - MGP_C3HHeJ_P0028355 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028356.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794233 41801396 - MGP_C3HHeJ_P0028356 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028357.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794237 41801411 - MGP_C3HHeJ_P0028357 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028358.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794238 41801157 - MGP_C3HHeJ_P0028358 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028359.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794242 41801175 - MGP_C3HHeJ_P0028359 Pttg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028360.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41794995 41801421 - MGP_C3HHeJ_P0028360 Pttg1 protein_coding protein_coding MGP_C3HHeJ_T0028361.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41798116 41801312 - Pttg1 protein_coding processed_transcript MGP_C3HHeJ_T0028362.1 MGP_C3HHeJ_G0017925.1 mouse_genomes_project 11 41799815 41801407 - Pttg1 protein_coding retained_intron MGP_C3HHeJ_T0003228.1 MGP_C3HHeJ_G0002980.1 mouse_genomes_project 11 102382514 102392580 + Dhx58os antisense antisense MGP_C3HHeJ_T0098349.1 MGP_C3HHeJ_G0036560.1 mouse_genomes_project 11 88494755 88499420 + 1110028F11Rik sense_intronic sense_intronic MGP_C3HHeJ_T0098350.1 MGP_C3HHeJ_G0036560.1 mouse_genomes_project 11 88495482 88499078 + 1110028F11Rik sense_intronic sense_intronic MGP_C3HHeJ_T0027609.1 MGP_C3HHeJ_G0017749.1 mouse_genomes_project 11 2000230 2003372 + MGP_C3HHeJ_P0027609 Rasl10a protein_coding protein_coding MGP_C3HHeJ_T0027610.1 MGP_C3HHeJ_G0017749.1 mouse_genomes_project 11 2001952 2003049 + Rasl10a protein_coding processed_transcript MGP_C3HHeJ_T0006101.1 MGP_C3HHeJ_G0005087.1 mouse_genomes_project 11 15973884 16083908 - Gm12023 lincRNA lincRNA MGP_C3HHeJ_T0029205.1 MGP_C3HHeJ_G0018173.1 mouse_genomes_project 11 59944076 59963111 + Alkbh5 protein_coding processed_transcript MGP_C3HHeJ_T0029206.1 MGP_C3HHeJ_G0018173.1 mouse_genomes_project 11 59945674 59967214 + MGP_C3HHeJ_P0029206 Alkbh5 protein_coding protein_coding MGP_C3HHeJ_T0012486.1 MGP_C3HHeJ_G0010590.1 mouse_genomes_project 11 52980243 52981473 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033110.1 MGP_C3HHeJ_G0019124.1 mouse_genomes_project 11 117741863 117803169 + MGP_C3HHeJ_P0033110 Tmem104 protein_coding protein_coding MGP_C3HHeJ_T0033111.1 MGP_C3HHeJ_G0019124.1 mouse_genomes_project 11 117741863 117803169 + MGP_C3HHeJ_P0033111 Tmem104 protein_coding protein_coding MGP_C3HHeJ_T0033112.1 MGP_C3HHeJ_G0019124.1 mouse_genomes_project 11 117741887 117750741 + Tmem104 protein_coding processed_transcript MGP_C3HHeJ_T0033113.1 MGP_C3HHeJ_G0019124.1 mouse_genomes_project 11 117741927 117801911 + Tmem104 protein_coding processed_transcript MGP_C3HHeJ_T0031986.1 MGP_C3HHeJ_G0018844.1 mouse_genomes_project 11 100897077 100902604 - MGP_C3HHeJ_P0031986 Krt27 protein_coding protein_coding MGP_C3HHeJ_T0027772.1 MGP_C3HHeJ_G0017783.1 mouse_genomes_project 11 3680315 3682300 - Wap protein_coding processed_transcript MGP_C3HHeJ_T0027773.1 MGP_C3HHeJ_G0017783.1 mouse_genomes_project 11 3680315 3683340 - MGP_C3HHeJ_P0027773 Wap protein_coding protein_coding MGP_C3HHeJ_T0027774.1 MGP_C3HHeJ_G0017783.1 mouse_genomes_project 11 3680372 3682289 - Wap protein_coding processed_transcript MGP_C3HHeJ_T0030183.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72136990 72138365 - 4933427D14Rik protein_coding processed_transcript MGP_C3HHeJ_T0030184.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72136990 72194242 - MGP_C3HHeJ_P0030184 4933427D14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030185.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72136991 72194050 - MGP_C3HHeJ_P0030185 4933427D14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030186.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72137158 72190554 - MGP_C3HHeJ_P0030186 4933427D14Rik protein_coding protein_coding MGP_C3HHeJ_T0030187.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72138454 72159572 - 4933427D14Rik protein_coding processed_transcript MGP_C3HHeJ_T0030188.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72182173 72194214 - MGP_C3HHeJ_P0030188 4933427D14Rik protein_coding protein_coding MGP_C3HHeJ_T0030189.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72185161 72194003 - 4933427D14Rik protein_coding processed_transcript MGP_C3HHeJ_T0030190.1 MGP_C3HHeJ_G0018383.1 mouse_genomes_project 11 72185408 72189395 - 4933427D14Rik protein_coding processed_transcript MGP_C3HHeJ_T0028027.1 MGP_C3HHeJ_G0017845.1 mouse_genomes_project 11 21196055 21215500 - MGP_C3HHeJ_P0028027 Pex13 protein_coding protein_coding MGP_C3HHeJ_T0028028.1 MGP_C3HHeJ_G0017845.1 mouse_genomes_project 11 21199032 21215393 - MGP_C3HHeJ_P0028028 Pex13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028029.1 MGP_C3HHeJ_G0017845.1 mouse_genomes_project 11 21205399 21215383 - Pex13 protein_coding processed_transcript MGP_C3HHeJ_T0028030.1 MGP_C3HHeJ_G0017845.1 mouse_genomes_project 11 21205652 21215214 - Pex13 protein_coding processed_transcript MGP_C3HHeJ_T0028767.1 MGP_C3HHeJ_G0018039.1 mouse_genomes_project 11 52342427 52352323 + MGP_C3HHeJ_P0028767 Zcchc10 protein_coding protein_coding MGP_C3HHeJ_T0028768.1 MGP_C3HHeJ_G0018039.1 mouse_genomes_project 11 52345148 52351501 + MGP_C3HHeJ_P0028768 Zcchc10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030047.1 MGP_C3HHeJ_G0018359.1 mouse_genomes_project 11 70569636 70572551 + MGP_C3HHeJ_P0030047 Gp1ba protein_coding protein_coding MGP_C3HHeJ_T0030048.1 MGP_C3HHeJ_G0018359.1 mouse_genomes_project 11 70569658 70572335 + MGP_C3HHeJ_P0030048 Gp1ba protein_coding protein_coding MGP_C3HHeJ_T0029014.1 MGP_C3HHeJ_G0018111.1 mouse_genomes_project 11 57820266 57822889 - MGP_C3HHeJ_P0029014 protein_coding protein_coding MGP_C3HHeJ_T0006238.1 MGP_C3HHeJ_G0005196.1 mouse_genomes_project 11 90051443 90053730 - Gm11497 lincRNA lincRNA MGP_C3HHeJ_T0028087.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26935801 26983724 + MGP_C3HHeJ_P0028087 Smek2 protein_coding protein_coding MGP_C3HHeJ_T0028088.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26935801 26972690 + MGP_C3HHeJ_P0028088 Smek2 protein_coding protein_coding MGP_C3HHeJ_T0028089.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26936655 26951468 + MGP_C3HHeJ_P0028089 Smek2 protein_coding protein_coding MGP_C3HHeJ_T0028090.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26960257 26964217 + Smek2 protein_coding processed_transcript MGP_C3HHeJ_T0028091.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26960268 26972511 + MGP_C3HHeJ_P0028091 Smek2 protein_coding protein_coding MGP_C3HHeJ_T0028092.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26968633 26981478 + Smek2 protein_coding processed_transcript MGP_C3HHeJ_T0028093.1 MGP_C3HHeJ_G0017858.1 mouse_genomes_project 11 26976667 26983724 + MGP_C3HHeJ_P0028093 Smek2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028171.1 MGP_C3HHeJ_G0017875.1 mouse_genomes_project 11 28849382 28859585 - MGP_C3HHeJ_P0028171 Chac2 protein_coding protein_coding MGP_C3HHeJ_T0028172.1 MGP_C3HHeJ_G0017875.1 mouse_genomes_project 11 28849627 28859569 - MGP_C3HHeJ_P0028172 Chac2 protein_coding protein_coding MGP_C3HHeJ_T0027525.1 MGP_C3HHeJ_G0017729.1 mouse_genomes_project 11 1027135 1033106 + MGP_C3HHeJ_P0027525 Rnf215 protein_coding protein_coding MGP_C3HHeJ_T0027526.1 MGP_C3HHeJ_G0017729.1 mouse_genomes_project 11 1027147 1029302 + MGP_C3HHeJ_P0027526 Rnf215 protein_coding protein_coding MGP_C3HHeJ_T0027527.1 MGP_C3HHeJ_G0017729.1 mouse_genomes_project 11 1027215 1029151 + MGP_C3HHeJ_P0027527 Rnf215 protein_coding protein_coding MGP_C3HHeJ_T0027528.1 MGP_C3HHeJ_G0017729.1 mouse_genomes_project 11 1027435 1029089 + Rnf215 protein_coding processed_transcript MGP_C3HHeJ_T0029500.1 MGP_C3HHeJ_G0018236.1 mouse_genomes_project 11 66744068 66758619 - MGP_C3HHeJ_P0029500 Adprm protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029501.1 MGP_C3HHeJ_G0018236.1 mouse_genomes_project 11 66744204 66758595 - MGP_C3HHeJ_P0029501 Adprm protein_coding protein_coding MGP_C3HHeJ_T0029502.1 MGP_C3HHeJ_G0018236.1 mouse_genomes_project 11 66744432 66746691 - Adprm protein_coding processed_transcript MGP_C3HHeJ_T0029503.1 MGP_C3HHeJ_G0018236.1 mouse_genomes_project 11 66747859 66758610 - Adprm protein_coding processed_transcript MGP_C3HHeJ_T0029504.1 MGP_C3HHeJ_G0018236.1 mouse_genomes_project 11 66747900 66758616 - Adprm protein_coding processed_transcript MGP_C3HHeJ_T0029505.1 MGP_C3HHeJ_G0018236.1 mouse_genomes_project 11 66748045 66758614 - Adprm protein_coding processed_transcript MGP_C3HHeJ_T0032138.1 MGP_C3HHeJ_G0018918.1 mouse_genomes_project 11 102410060 102433320 - MGP_C3HHeJ_P0032138 Rab5c protein_coding protein_coding MGP_C3HHeJ_T0032139.1 MGP_C3HHeJ_G0018918.1 mouse_genomes_project 11 102410062 102433320 - MGP_C3HHeJ_P0032139 Rab5c protein_coding protein_coding MGP_C3HHeJ_T0032140.1 MGP_C3HHeJ_G0018918.1 mouse_genomes_project 11 102413551 102425314 - MGP_C3HHeJ_P0032140 Rab5c protein_coding protein_coding MGP_C3HHeJ_T0032141.1 MGP_C3HHeJ_G0018918.1 mouse_genomes_project 11 102415048 102433281 - MGP_C3HHeJ_P0032141 Rab5c protein_coding protein_coding MGP_C3HHeJ_T0027598.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1923656 1982373 + MGP_C3HHeJ_P0027598 Ap1b1 protein_coding protein_coding MGP_C3HHeJ_T0027599.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1923656 1982311 + MGP_C3HHeJ_P0027599 Ap1b1 protein_coding protein_coding MGP_C3HHeJ_T0027600.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1923744 1954899 + Ap1b1 protein_coding processed_transcript MGP_C3HHeJ_T0027601.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1923766 1956009 + Ap1b1 protein_coding processed_transcript MGP_C3HHeJ_T0027602.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1946822 1954899 + Ap1b1 protein_coding processed_transcript MGP_C3HHeJ_T0027603.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1946878 1982311 + MGP_C3HHeJ_P0027603 Ap1b1 protein_coding protein_coding MGP_C3HHeJ_T0027604.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1970558 1972372 + Ap1b1 protein_coding processed_transcript MGP_C3HHeJ_T0027605.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1976950 1979984 + Ap1b1 protein_coding processed_transcript MGP_C3HHeJ_T0027606.1 MGP_C3HHeJ_G0017747.1 mouse_genomes_project 11 1978345 1980003 + Ap1b1 protein_coding processed_transcript MGP_C3HHeJ_T0033745.1 MGP_C3HHeJ_G0019245.1 mouse_genomes_project 11 123190016 123196651 + MGP_C3HHeJ_P0033745 Fscn2 protein_coding protein_coding MGP_C3HHeJ_T0033746.1 MGP_C3HHeJ_G0019245.1 mouse_genomes_project 11 123195024 123196431 + Fscn2 protein_coding processed_transcript MGP_C3HHeJ_T0033747.1 MGP_C3HHeJ_G0019245.1 mouse_genomes_project 11 123195195 123196303 + Fscn2 protein_coding processed_transcript MGP_C3HHeJ_T0003153.1 MGP_C3HHeJ_G0002924.1 mouse_genomes_project 11 69280687 69285817 + Dnah2os antisense antisense MGP_C3HHeJ_T0032882.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109681233 109713593 + Helz protein_coding processed_transcript MGP_C3HHeJ_T0032883.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109681233 109832429 + MGP_C3HHeJ_P0032883 Helz protein_coding protein_coding MGP_C3HHeJ_T0032884.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109681233 109839315 + MGP_C3HHeJ_P0032884 Helz protein_coding protein_coding MGP_C3HHeJ_T0032885.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109681233 109817368 + MGP_C3HHeJ_P0032885 Helz protein_coding protein_coding MGP_C3HHeJ_T0032886.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109769664 109817368 + MGP_C3HHeJ_P0032886 Helz protein_coding protein_coding MGP_C3HHeJ_T0032887.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109778304 109789890 + Helz protein_coding processed_transcript MGP_C3HHeJ_T0032888.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109816132 109818075 + Helz protein_coding processed_transcript MGP_C3HHeJ_T0032889.1 MGP_C3HHeJ_G0019072.1 mouse_genomes_project 11 109818040 109831999 + Helz protein_coding processed_transcript MGP_C3HHeJ_T0012628.1 MGP_C3HHeJ_G0010732.1 mouse_genomes_project 11 107034993 107035682 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031819.1 MGP_C3HHeJ_G0018803.1 mouse_genomes_project 11 99478763 99479957 + Rpl19 protein_coding retained_intron MGP_C3HHeJ_T0031820.1 MGP_C3HHeJ_G0018803.1 mouse_genomes_project 11 99478792 99483420 + MGP_C3HHeJ_P0031820 Rpl19 protein_coding protein_coding MGP_C3HHeJ_T0030039.1 MGP_C3HHeJ_G0018357.1 mouse_genomes_project 11 70543258 70547570 - MGP_C3HHeJ_P0030039 Chrne protein_coding protein_coding MGP_C3HHeJ_T0030040.1 MGP_C3HHeJ_G0018357.1 mouse_genomes_project 11 70543258 70547592 - MGP_C3HHeJ_P0030040 Chrne protein_coding protein_coding MGP_C3HHeJ_T0030041.1 MGP_C3HHeJ_G0018357.1 mouse_genomes_project 11 70543260 70544049 - Chrne protein_coding retained_intron MGP_C3HHeJ_T0030042.1 MGP_C3HHeJ_G0018357.1 mouse_genomes_project 11 70543268 70544073 - Chrne protein_coding retained_intron MGP_C3HHeJ_T0029613.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777642 68781643 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0029614.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777642 68778216 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0029615.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777642 68780236 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0029616.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777642 68780301 - MGP_C3HHeJ_P0029616 Rangrf protein_coding protein_coding MGP_C3HHeJ_T0029617.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777645 68778547 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0029618.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777646 68778649 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0029619.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777653 68778572 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0029620.1 MGP_C3HHeJ_G0018264.1 mouse_genomes_project 11 68777656 68778400 - Rangrf protein_coding processed_transcript MGP_C3HHeJ_T0003108.1 MGP_C3HHeJ_G0002887.1 mouse_genomes_project 11 56849190 56851746 - 4933426K07Rik antisense antisense MGP_C3HHeJ_T0011211.1 MGP_C3HHeJ_G0009344.1 mouse_genomes_project 11 72817625 72817817 - Gm22075 misc_RNA misc_RNA MGP_C3HHeJ_T0012380.1 MGP_C3HHeJ_G0010484.1 mouse_genomes_project 11 12806408 12813229 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033793.1 MGP_C3HHeJ_G0019254.1 mouse_genomes_project 11 123321397 123325850 + MGP_C3HHeJ_P0033793 Mrpl12 protein_coding protein_coding MGP_C3HHeJ_T0033794.1 MGP_C3HHeJ_G0019254.1 mouse_genomes_project 11 123321811 123325242 + Mrpl12 protein_coding processed_transcript MGP_C3HHeJ_T0033967.1 MGP_C3HHeJ_G0019289.1 mouse_genomes_project 11 124060381 124089547 - MGP_C3HHeJ_P0033967 Ogfod3 protein_coding protein_coding MGP_C3HHeJ_T0029523.1 MGP_C3HHeJ_G0018243.1 mouse_genomes_project 11 67043590 67094477 + MGP_C3HHeJ_P0029523 Myh13 protein_coding protein_coding MGP_C3HHeJ_T0029524.1 MGP_C3HHeJ_G0018243.1 mouse_genomes_project 11 67043712 67094477 + MGP_C3HHeJ_P0029524 Myh13 protein_coding protein_coding MGP_C3HHeJ_T0029525.1 MGP_C3HHeJ_G0018243.1 mouse_genomes_project 11 67049039 67094393 + MGP_C3HHeJ_P0029525 Myh13 protein_coding protein_coding MGP_C3HHeJ_T0029526.1 MGP_C3HHeJ_G0018243.1 mouse_genomes_project 11 67087038 67092090 + MGP_C3HHeJ_P0029526 Myh13 protein_coding protein_coding MGP_C3HHeJ_T0100032.1 MGP_C3HHeJ_G0038226.1 mouse_genomes_project 11 77935008 77935140 - Gm23132 snoRNA snoRNA MGP_C3HHeJ_T0003131.1 MGP_C3HHeJ_G0002906.1 mouse_genomes_project 11 62340410 62343786 - antisense antisense MGP_C3HHeJ_T0028436.1 MGP_C3HHeJ_G0017948.1 mouse_genomes_project 11 44870309 44881521 + Fam71b protein_coding processed_transcript MGP_C3HHeJ_T0028437.1 MGP_C3HHeJ_G0017948.1 mouse_genomes_project 11 44878456 44882867 + MGP_C3HHeJ_P0028437 Fam71b protein_coding protein_coding MGP_C3HHeJ_T0033535.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120520496 120533635 - MGP_C3HHeJ_P0033535 Tk1 protein_coding protein_coding MGP_C3HHeJ_T0033536.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120520594 120524198 - Tk1 protein_coding retained_intron MGP_C3HHeJ_T0033537.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120522533 120524968 - Tk1 protein_coding retained_intron MGP_C3HHeJ_T0033538.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120529183 120533380 - Tk1 protein_coding retained_intron MGP_C3HHeJ_T0033539.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120529261 120533410 - Tk1 protein_coding retained_intron MGP_C3HHeJ_T0033540.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120530001 120533390 - Tk1 protein_coding retained_intron MGP_C3HHeJ_T0033541.1 MGP_C3HHeJ_G0019203.1 mouse_genomes_project 11 120532377 120533360 - Tk1 protein_coding retained_intron MGP_C3HHeJ_T0033614.1 MGP_C3HHeJ_G0019220.1 mouse_genomes_project 11 121754201 121758847 + MGP_C3HHeJ_P0033614 Enpp7 protein_coding protein_coding MGP_C3HHeJ_T0033615.1 MGP_C3HHeJ_G0019220.1 mouse_genomes_project 11 121754229 121758671 + MGP_C3HHeJ_P0033615 Enpp7 protein_coding protein_coding MGP_C3HHeJ_T0028248.1 MGP_C3HHeJ_G0017896.1 mouse_genomes_project 11 31126437 31138359 - MGP_C3HHeJ_P0028248 protein_coding protein_coding MGP_C3HHeJ_T0028249.1 MGP_C3HHeJ_G0017896.1 mouse_genomes_project 11 31126660 31138225 - MGP_C3HHeJ_P0028249 protein_coding protein_coding MGP_C3HHeJ_T0028250.1 MGP_C3HHeJ_G0017896.1 mouse_genomes_project 11 31126661 31128799 - protein_coding processed_transcript MGP_C3HHeJ_T0028251.1 MGP_C3HHeJ_G0017896.1 mouse_genomes_project 11 31129260 31138230 - MGP_C3HHeJ_P0028251 protein_coding protein_coding MGP_C3HHeJ_T0028252.1 MGP_C3HHeJ_G0017896.1 mouse_genomes_project 11 31129661 31138229 - MGP_C3HHeJ_P0028252 protein_coding protein_coding MGP_C3HHeJ_T0028253.1 MGP_C3HHeJ_G0017896.1 mouse_genomes_project 11 31130359 31131599 - protein_coding processed_transcript MGP_C3HHeJ_T0028744.1 MGP_C3HHeJ_G0018032.1 mouse_genomes_project 11 51034545 51064643 + MGP_C3HHeJ_P0028744 Ppp2ca protein_coding protein_coding MGP_C3HHeJ_T0028745.1 MGP_C3HHeJ_G0018032.1 mouse_genomes_project 11 51055620 51056570 + Ppp2ca protein_coding retained_intron MGP_C3HHeJ_T0031299.1 MGP_C3HHeJ_G0018673.1 mouse_genomes_project 11 88819347 88827334 - MGP_C3HHeJ_P0031299 Dynll2 protein_coding protein_coding MGP_C3HHeJ_T0031300.1 MGP_C3HHeJ_G0018673.1 mouse_genomes_project 11 88819347 88823828 - MGP_C3HHeJ_P0031300 Dynll2 protein_coding protein_coding MGP_C3HHeJ_T0031301.1 MGP_C3HHeJ_G0018673.1 mouse_genomes_project 11 88819347 88826386 - MGP_C3HHeJ_P0031301 Dynll2 protein_coding protein_coding MGP_C3HHeJ_T0031302.1 MGP_C3HHeJ_G0018673.1 mouse_genomes_project 11 88819979 88827157 - MGP_C3HHeJ_P0031302 Dynll2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098822.1 MGP_C3HHeJ_G0037016.1 mouse_genomes_project 11 108225510 108225654 - Gm25556 snRNA snRNA MGP_C3HHeJ_T0009586.1 MGP_C3HHeJ_G0007719.1 mouse_genomes_project 11 44633145 44633202 + Mir7239 miRNA miRNA MGP_C3HHeJ_T0031655.1 MGP_C3HHeJ_G0018767.1 mouse_genomes_project 11 98152294 98167230 + MGP_C3HHeJ_P0031655 Cbx1 protein_coding protein_coding MGP_C3HHeJ_T0031656.1 MGP_C3HHeJ_G0018767.1 mouse_genomes_project 11 98152304 98171780 + MGP_C3HHeJ_P0031656 Cbx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031657.1 MGP_C3HHeJ_G0018767.1 mouse_genomes_project 11 98152326 98172271 + MGP_C3HHeJ_P0031657 Cbx1 protein_coding protein_coding MGP_C3HHeJ_T0031658.1 MGP_C3HHeJ_G0018767.1 mouse_genomes_project 11 98152342 98164646 + Cbx1 protein_coding retained_intron MGP_C3HHeJ_T0031659.1 MGP_C3HHeJ_G0018767.1 mouse_genomes_project 11 98152416 98172171 + MGP_C3HHeJ_P0031659 Cbx1 protein_coding protein_coding MGP_C3HHeJ_T0012567.1 MGP_C3HHeJ_G0010671.1 mouse_genomes_project 11 80299239 80299980 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033304.1 MGP_C3HHeJ_G0019158.1 mouse_genomes_project 11 118618114 118622874 - MGP_C3HHeJ_P0033304 Galk1 protein_coding protein_coding MGP_C3HHeJ_T0006204.1 MGP_C3HHeJ_G0005174.1 mouse_genomes_project 11 76828677 76836413 + Gm26780 lincRNA lincRNA MGP_C3HHeJ_T0006284.1 MGP_C3HHeJ_G0005230.1 mouse_genomes_project 11 116702392 116703682 + Gm11691 lincRNA lincRNA MGP_C3HHeJ_T0027930.1 MGP_C3HHeJ_G0017824.1 mouse_genomes_project 11 18269941 18277427 - MGP_C3HHeJ_P0027930 Lgalsl protein_coding protein_coding MGP_C3HHeJ_T0027931.1 MGP_C3HHeJ_G0017824.1 mouse_genomes_project 11 18272718 18277126 - Lgalsl protein_coding processed_transcript MGP_C3HHeJ_T0027932.1 MGP_C3HHeJ_G0017824.1 mouse_genomes_project 11 18275682 18277427 - Lgalsl protein_coding processed_transcript MGP_C3HHeJ_T0027933.1 MGP_C3HHeJ_G0017824.1 mouse_genomes_project 11 18276167 18277393 - Lgalsl protein_coding processed_transcript MGP_C3HHeJ_T0016984.1 MGP_C3HHeJ_G0014941.1 mouse_genomes_project 11 69162738 69164919 + processed_transcript processed_transcript MGP_C3HHeJ_T0016985.1 MGP_C3HHeJ_G0014941.1 mouse_genomes_project 11 69163086 69163653 + processed_transcript processed_transcript MGP_C3HHeJ_T0033443.1 MGP_C3HHeJ_G0019185.1 mouse_genomes_project 11 119326066 119331332 + MGP_C3HHeJ_P0033443 1810032O08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033444.1 MGP_C3HHeJ_G0019185.1 mouse_genomes_project 11 119326082 119331342 + MGP_C3HHeJ_P0033444 1810032O08Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0033445.1 MGP_C3HHeJ_G0019185.1 mouse_genomes_project 11 119326093 119327020 + 1810032O08Rik protein_coding retained_intron MGP_C3HHeJ_T0033446.1 MGP_C3HHeJ_G0019185.1 mouse_genomes_project 11 119326105 119328986 + MGP_C3HHeJ_P0033446 1810032O08Rik protein_coding protein_coding MGP_C3HHeJ_T0033447.1 MGP_C3HHeJ_G0019185.1 mouse_genomes_project 11 119326278 119328372 + MGP_C3HHeJ_P0033447 1810032O08Rik protein_coding protein_coding MGP_C3HHeJ_T0033448.1 MGP_C3HHeJ_G0019185.1 mouse_genomes_project 11 119327089 119331336 + MGP_C3HHeJ_P0033448 1810032O08Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032401.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104024644 104029096 + MGP_C3HHeJ_P0032401 G6pc3 protein_coding protein_coding MGP_C3HHeJ_T0032402.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104024693 104029096 + MGP_C3HHeJ_P0032402 G6pc3 protein_coding protein_coding MGP_C3HHeJ_T0032403.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104024779 104027156 + G6pc3 protein_coding processed_transcript MGP_C3HHeJ_T0032404.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104024850 104028215 + G6pc3 protein_coding processed_transcript MGP_C3HHeJ_T0032405.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104026823 104028667 + G6pc3 protein_coding processed_transcript MGP_C3HHeJ_T0032406.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104027033 104028613 + G6pc3 protein_coding processed_transcript MGP_C3HHeJ_T0032407.1 MGP_C3HHeJ_G0018976.1 mouse_genomes_project 11 104027039 104028766 + G6pc3 protein_coding processed_transcript MGP_C3HHeJ_T0012610.1 MGP_C3HHeJ_G0010714.1 mouse_genomes_project 11 101313111 101313264 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031684.1 MGP_C3HHeJ_G0018771.1 mouse_genomes_project 11 98301251 98302640 + Prr15l protein_coding processed_transcript MGP_C3HHeJ_T0031685.1 MGP_C3HHeJ_G0018771.1 mouse_genomes_project 11 98302449 98309591 + MGP_C3HHeJ_P0031685 Prr15l protein_coding protein_coding MGP_C3HHeJ_T0031686.1 MGP_C3HHeJ_G0018771.1 mouse_genomes_project 11 98302471 98311773 + MGP_C3HHeJ_P0031686 Prr15l protein_coding protein_coding MGP_C3HHeJ_T0031687.1 MGP_C3HHeJ_G0018771.1 mouse_genomes_project 11 98302541 98309586 + MGP_C3HHeJ_P0031687 Prr15l protein_coding protein_coding MGP_C3HHeJ_T0031688.1 MGP_C3HHeJ_G0018771.1 mouse_genomes_project 11 98305309 98309223 + MGP_C3HHeJ_P0031688 Prr15l protein_coding protein_coding MGP_C3HHeJ_T0098002.1 MGP_C3HHeJ_G0036214.1 mouse_genomes_project 11 110004875 110004987 + Gm27595 rRNA rRNA MGP_C3HHeJ_T0012501.1 MGP_C3HHeJ_G0010605.1 mouse_genomes_project 11 57435787 57437061 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028944.1 MGP_C3HHeJ_G0018084.1 mouse_genomes_project 11 54664405 54763201 - MGP_C3HHeJ_P0028944 Glra1 protein_coding protein_coding MGP_C3HHeJ_T0028945.1 MGP_C3HHeJ_G0018084.1 mouse_genomes_project 11 54664405 54762736 - MGP_C3HHeJ_P0028945 Glra1 protein_coding protein_coding MGP_C3HHeJ_T0028946.1 MGP_C3HHeJ_G0018084.1 mouse_genomes_project 11 54664405 54762824 - MGP_C3HHeJ_P0028946 Glra1 protein_coding protein_coding MGP_C3HHeJ_T0012571.1 MGP_C3HHeJ_G0010675.1 mouse_genomes_project 11 82039474 82040293 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030286.1 MGP_C3HHeJ_G0018411.1 mouse_genomes_project 11 73267448 73295597 + MGP_C3HHeJ_P0030286 Trpv1 protein_coding protein_coding MGP_C3HHeJ_T0030287.1 MGP_C3HHeJ_G0018411.1 mouse_genomes_project 11 73271399 73294865 + MGP_C3HHeJ_P0030287 Trpv1 protein_coding protein_coding MGP_C3HHeJ_T0030288.1 MGP_C3HHeJ_G0018411.1 mouse_genomes_project 11 73271399 73294865 + MGP_C3HHeJ_P0030288 Trpv1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030289.1 MGP_C3HHeJ_G0018411.1 mouse_genomes_project 11 73273178 73295600 + MGP_C3HHeJ_P0030289 Trpv1 protein_coding protein_coding MGP_C3HHeJ_T0030290.1 MGP_C3HHeJ_G0018411.1 mouse_genomes_project 11 73273442 73289255 + MGP_C3HHeJ_P0030290 Trpv1 protein_coding protein_coding MGP_C3HHeJ_T0030291.1 MGP_C3HHeJ_G0018411.1 mouse_genomes_project 11 73286741 73288655 + Trpv1 protein_coding processed_transcript MGP_C3HHeJ_T0032144.1 MGP_C3HHeJ_G0018920.1 mouse_genomes_project 11 102457447 102459307 - MGP_C3HHeJ_P0032144 Hcrt protein_coding protein_coding MGP_C3HHeJ_T0032145.1 MGP_C3HHeJ_G0018920.1 mouse_genomes_project 11 102458069 102459310 - MGP_C3HHeJ_P0032145 Hcrt protein_coding protein_coding MGP_C3HHeJ_T0012555.1 MGP_C3HHeJ_G0010659.1 mouse_genomes_project 11 77343842 77344171 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028004.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 20839112 21031388 + MGP_C3HHeJ_P0028004 Usp34 protein_coding protein_coding MGP_C3HHeJ_T0028005.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 20839133 21030572 + MGP_C3HHeJ_P0028005 Usp34 protein_coding protein_coding MGP_C3HHeJ_T0028006.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 20952402 20959331 + Usp34 protein_coding processed_transcript MGP_C3HHeJ_T0028007.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 20958733 20997784 + MGP_C3HHeJ_P0028007 Usp34 protein_coding protein_coding MGP_C3HHeJ_T0028008.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 20999035 21001979 + Usp34 protein_coding processed_transcript MGP_C3HHeJ_T0028009.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 20999174 21001694 + Usp34 protein_coding processed_transcript MGP_C3HHeJ_T0028010.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 21011131 21029196 + MGP_C3HHeJ_P0028010 Usp34 protein_coding protein_coding MGP_C3HHeJ_T0028011.1 MGP_C3HHeJ_G0017841.1 mouse_genomes_project 11 21027632 21028151 + Usp34 protein_coding processed_transcript MGP_C3HHeJ_T0030932.1 MGP_C3HHeJ_G0018580.1 mouse_genomes_project 11 82662077 82798968 - Ccl1 protein_coding processed_transcript MGP_C3HHeJ_T0030933.1 MGP_C3HHeJ_G0018580.1 mouse_genomes_project 11 82662077 82665213 - MGP_C3HHeJ_P0030933 Ccl1 protein_coding protein_coding MGP_C3HHeJ_T0030934.1 MGP_C3HHeJ_G0018580.1 mouse_genomes_project 11 82662079 82665213 - MGP_C3HHeJ_P0030934 Ccl1 protein_coding protein_coding MGP_C3HHeJ_T0028753.1 MGP_C3HHeJ_G0018035.1 mouse_genomes_project 11 51321196 51350049 + MGP_C3HHeJ_P0028753 Vdac1 protein_coding protein_coding MGP_C3HHeJ_T0028754.1 MGP_C3HHeJ_G0018035.1 mouse_genomes_project 11 51321471 51349148 + MGP_C3HHeJ_P0028754 Vdac1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028755.1 MGP_C3HHeJ_G0018035.1 mouse_genomes_project 11 51334523 51337199 + Vdac1 protein_coding processed_transcript MGP_C3HHeJ_T0028756.1 MGP_C3HHeJ_G0018035.1 mouse_genomes_project 11 51334686 51349175 + MGP_C3HHeJ_P0028756 Vdac1 protein_coding protein_coding MGP_C3HHeJ_T0028757.1 MGP_C3HHeJ_G0018035.1 mouse_genomes_project 11 51347848 51349443 + Vdac1 protein_coding retained_intron MGP_C3HHeJ_T0032151.1 MGP_C3HHeJ_G0018923.1 mouse_genomes_project 11 102560629 102563748 + MGP_C3HHeJ_P0032151 Stat5a protein_coding protein_coding MGP_C3HHeJ_T0032152.1 MGP_C3HHeJ_G0018923.1 mouse_genomes_project 11 102562345 102565221 + MGP_C3HHeJ_P0032152 Stat5a protein_coding protein_coding MGP_C3HHeJ_T0032153.1 MGP_C3HHeJ_G0018923.1 mouse_genomes_project 11 102562485 102588327 + Stat5a protein_coding processed_transcript MGP_C3HHeJ_T0032154.1 MGP_C3HHeJ_G0018923.1 mouse_genomes_project 11 102562559 102595497 + MGP_C3HHeJ_P0032154 Stat5a protein_coding protein_coding MGP_C3HHeJ_T0032155.1 MGP_C3HHeJ_G0018923.1 mouse_genomes_project 11 102590524 102591613 + Stat5a protein_coding processed_transcript MGP_C3HHeJ_T0027709.1 MGP_C3HHeJ_G0017769.1 mouse_genomes_project 11 3099791 3195243 - MGP_C3HHeJ_P0027709 Nudcd3 protein_coding protein_coding MGP_C3HHeJ_T0027710.1 MGP_C3HHeJ_G0017769.1 mouse_genomes_project 11 3100086 3114949 - Nudcd3 protein_coding processed_transcript MGP_C3HHeJ_T0027711.1 MGP_C3HHeJ_G0017769.1 mouse_genomes_project 11 3100558 3186834 - MGP_C3HHeJ_P0027711 Nudcd3 protein_coding protein_coding MGP_C3HHeJ_T0027712.1 MGP_C3HHeJ_G0017769.1 mouse_genomes_project 11 3118464 3186834 - Nudcd3 protein_coding retained_intron MGP_C3HHeJ_T0032618.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105248714 105280254 - MGP_C3HHeJ_P0032618 Arhgap27 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032619.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105248722 105280656 - Arhgap27 protein_coding retained_intron MGP_C3HHeJ_T0032620.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105248724 105261929 - MGP_C3HHeJ_P0032620 Arhgap27 protein_coding protein_coding MGP_C3HHeJ_T0032621.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105250390 105251331 - Arhgap27 protein_coding retained_intron MGP_C3HHeJ_T0032622.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105250453 105250620 - Arhgap27 protein_coding processed_transcript MGP_C3HHeJ_T0032623.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105250689 105251310 - Arhgap27 protein_coding retained_intron MGP_C3HHeJ_T0032624.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105252488 105256946 - Arhgap27 protein_coding retained_intron MGP_C3HHeJ_T0032625.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105255000 105256530 - Arhgap27 protein_coding retained_intron MGP_C3HHeJ_T0032626.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105256455 105273327 - MGP_C3HHeJ_P0032626 Arhgap27 protein_coding protein_coding MGP_C3HHeJ_T0032627.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105257358 105273341 - MGP_C3HHeJ_P0032627 Arhgap27 protein_coding protein_coding MGP_C3HHeJ_T0032628.1 MGP_C3HHeJ_G0019013.1 mouse_genomes_project 11 105276706 105280428 - MGP_C3HHeJ_P0032628 Arhgap27 protein_coding protein_coding MGP_C3HHeJ_T0033383.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118961478 119036073 - MGP_C3HHeJ_P0033383 Rnf157 protein_coding protein_coding MGP_C3HHeJ_T0033384.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118961478 118984860 - MGP_C3HHeJ_P0033384 Rnf157 protein_coding protein_coding MGP_C3HHeJ_T0033385.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118961478 119036073 - MGP_C3HHeJ_P0033385 Rnf157 protein_coding protein_coding MGP_C3HHeJ_T0033386.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118963471 118973195 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0033387.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118963538 118973669 - MGP_C3HHeJ_P0033387 Rnf157 protein_coding protein_coding MGP_C3HHeJ_T0033388.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118978396 118985278 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0033389.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118979712 118981214 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0033390.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118983122 118985086 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0033391.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118985030 118985786 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0033392.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 118985662 119013237 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0033393.1 MGP_C3HHeJ_G0019174.1 mouse_genomes_project 11 119024238 119036101 - Rnf157 protein_coding processed_transcript MGP_C3HHeJ_T0006165.1 MGP_C3HHeJ_G0005142.1 mouse_genomes_project 11 53268926 53304114 - 4933405E24Rik lincRNA lincRNA MGP_C3HHeJ_T0012435.1 MGP_C3HHeJ_G0010539.1 mouse_genomes_project 11 28396182 28399380 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031983.1 MGP_C3HHeJ_G0018842.1 mouse_genomes_project 11 100867089 100874516 - MGP_C3HHeJ_P0031983 Krt25 protein_coding protein_coding MGP_C3HHeJ_T0028106.1 MGP_C3HHeJ_G0017861.1 mouse_genomes_project 11 27278029 27281297 - MGP_C3HHeJ_P0028106 Prorsd1 protein_coding protein_coding MGP_C3HHeJ_T0028107.1 MGP_C3HHeJ_G0017861.1 mouse_genomes_project 11 27279147 27281299 - MGP_C3HHeJ_P0028107 Prorsd1 protein_coding protein_coding MGP_C3HHeJ_T0030689.1 MGP_C3HHeJ_G0018516.1 mouse_genomes_project 11 78392817 78460870 + MGP_C3HHeJ_P0030689 Fam222b protein_coding protein_coding MGP_C3HHeJ_T0030690.1 MGP_C3HHeJ_G0018516.1 mouse_genomes_project 11 78392865 78460245 + MGP_C3HHeJ_P0030690 Fam222b protein_coding protein_coding MGP_C3HHeJ_T0030691.1 MGP_C3HHeJ_G0018516.1 mouse_genomes_project 11 78415676 78460870 + MGP_C3HHeJ_P0030691 Fam222b protein_coding protein_coding MGP_C3HHeJ_T0030477.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75814089 75838434 + MGP_C3HHeJ_P0030477 Myo1c protein_coding protein_coding MGP_C3HHeJ_T0030478.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75819760 75834111 + Myo1c protein_coding retained_intron MGP_C3HHeJ_T0030479.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75819795 75838438 + MGP_C3HHeJ_P0030479 Myo1c protein_coding protein_coding MGP_C3HHeJ_T0030480.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75819809 75821260 + MGP_C3HHeJ_P0030480 Myo1c protein_coding protein_coding MGP_C3HHeJ_T0030481.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75825349 75829560 + Myo1c protein_coding retained_intron MGP_C3HHeJ_T0030482.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75829042 75833766 + Myo1c protein_coding retained_intron MGP_C3HHeJ_T0030483.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75832617 75834778 + Myo1c protein_coding retained_intron MGP_C3HHeJ_T0030484.1 MGP_C3HHeJ_G0018473.1 mouse_genomes_project 11 75834799 75836251 + Myo1c protein_coding retained_intron MGP_C3HHeJ_T0028415.1 MGP_C3HHeJ_G0017941.1 mouse_genomes_project 11 44401980 44410648 - MGP_C3HHeJ_P0028415 Thg1l protein_coding protein_coding MGP_C3HHeJ_T0028416.1 MGP_C3HHeJ_G0017941.1 mouse_genomes_project 11 44401980 44410342 - MGP_C3HHeJ_P0028416 Thg1l protein_coding protein_coding MGP_C3HHeJ_T0028417.1 MGP_C3HHeJ_G0017941.1 mouse_genomes_project 11 44405345 44409570 - Thg1l protein_coding processed_transcript MGP_C3HHeJ_T0028418.1 MGP_C3HHeJ_G0017941.1 mouse_genomes_project 11 44406327 44410311 - Thg1l protein_coding processed_transcript MGP_C3HHeJ_T0028419.1 MGP_C3HHeJ_G0017941.1 mouse_genomes_project 11 44409420 44410637 - Thg1l protein_coding processed_transcript MGP_C3HHeJ_T0101120.1 MGP_C3HHeJ_G0039293.1 mouse_genomes_project 11 106534309 106535639 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0098807.1 MGP_C3HHeJ_G0037001.1 mouse_genomes_project 11 89812448 89812555 + Gm23507 snRNA snRNA MGP_C3HHeJ_T0029554.1 MGP_C3HHeJ_G0018251.1 mouse_genomes_project 11 67720753 67971902 + MGP_C3HHeJ_P0029554 Stx8 protein_coding protein_coding MGP_C3HHeJ_T0029555.1 MGP_C3HHeJ_G0018251.1 mouse_genomes_project 11 67721031 67743381 + MGP_C3HHeJ_P0029555 Stx8 protein_coding protein_coding MGP_C3HHeJ_T0029556.1 MGP_C3HHeJ_G0018251.1 mouse_genomes_project 11 67721042 67730376 + MGP_C3HHeJ_P0029556 Stx8 protein_coding protein_coding MGP_C3HHeJ_T0029557.1 MGP_C3HHeJ_G0018251.1 mouse_genomes_project 11 67721052 67968913 + Stx8 protein_coding processed_transcript MGP_C3HHeJ_T0029558.1 MGP_C3HHeJ_G0018251.1 mouse_genomes_project 11 67721054 67730249 + Stx8 protein_coding processed_transcript MGP_C3HHeJ_T0029559.1 MGP_C3HHeJ_G0018251.1 mouse_genomes_project 11 67721068 67729425 + Stx8 protein_coding processed_transcript MGP_C3HHeJ_T0029573.1 MGP_C3HHeJ_G0018255.1 mouse_genomes_project 11 68332344 68334404 + MGP_C3HHeJ_P0029573 Mfsd6l protein_coding protein_coding MGP_C3HHeJ_T0006244.1 MGP_C3HHeJ_G0005200.1 mouse_genomes_project 11 96498988 96501331 - Gm11515 lincRNA lincRNA MGP_C3HHeJ_T0032457.1 MGP_C3HHeJ_G0018983.1 mouse_genomes_project 11 104200625 104217153 - MGP_C3HHeJ_P0032457 Slc4a1 protein_coding protein_coding MGP_C3HHeJ_T0032458.1 MGP_C3HHeJ_G0018983.1 mouse_genomes_project 11 104210957 104212444 - Slc4a1 protein_coding processed_transcript MGP_C3HHeJ_T0032459.1 MGP_C3HHeJ_G0018983.1 mouse_genomes_project 11 104212037 104215577 - Slc4a1 protein_coding processed_transcript MGP_C3HHeJ_T0032460.1 MGP_C3HHeJ_G0018983.1 mouse_genomes_project 11 104212070 104217120 - Slc4a1 protein_coding processed_transcript MGP_C3HHeJ_T0032461.1 MGP_C3HHeJ_G0018983.1 mouse_genomes_project 11 104213259 104218076 - Slc4a1 protein_coding processed_transcript MGP_C3HHeJ_T0003127.1 MGP_C3HHeJ_G0002903.1 mouse_genomes_project 11 62137374 62139281 - Gm12280 antisense antisense MGP_C3HHeJ_T0033114.1 MGP_C3HHeJ_G0019125.1 mouse_genomes_project 11 117805098 117817761 - MGP_C3HHeJ_P0033114 Grin2c protein_coding unknown_likely_coding MGP_C3HHeJ_T0033115.1 MGP_C3HHeJ_G0019125.1 mouse_genomes_project 11 117805102 117822063 - MGP_C3HHeJ_P0033115 Grin2c protein_coding protein_coding MGP_C3HHeJ_T0033116.1 MGP_C3HHeJ_G0019125.1 mouse_genomes_project 11 117805102 117823877 - MGP_C3HHeJ_P0033116 Grin2c protein_coding protein_coding MGP_C3HHeJ_T0031352.1 MGP_C3HHeJ_G0018688.1 mouse_genomes_project 11 90338122 90369389 - MGP_C3HHeJ_P0031352 protein_coding protein_coding MGP_C3HHeJ_T0030366.1 MGP_C3HHeJ_G0018450.1 mouse_genomes_project 11 74790220 74840411 - Pafah1b1 protein_coding retained_intron MGP_C3HHeJ_T0030367.1 MGP_C3HHeJ_G0018450.1 mouse_genomes_project 11 74790220 74840755 - MGP_C3HHeJ_P0030367 Pafah1b1 protein_coding protein_coding MGP_C3HHeJ_T0030368.1 MGP_C3HHeJ_G0018450.1 mouse_genomes_project 11 74790221 74840394 - Pafah1b1 protein_coding retained_intron MGP_C3HHeJ_T0030369.1 MGP_C3HHeJ_G0018450.1 mouse_genomes_project 11 74790221 74839934 - MGP_C3HHeJ_P0030369 Pafah1b1 protein_coding protein_coding MGP_C3HHeJ_T0030370.1 MGP_C3HHeJ_G0018450.1 mouse_genomes_project 11 74805094 74839247 - MGP_C3HHeJ_P0030370 Pafah1b1 protein_coding protein_coding MGP_C3HHeJ_T0003177.1 MGP_C3HHeJ_G0002944.1 mouse_genomes_project 11 83454868 83473235 - Slfn5os antisense antisense MGP_C3HHeJ_T0031151.1 MGP_C3HHeJ_G0018638.1 mouse_genomes_project 11 86558078 86561616 - MGP_C3HHeJ_P0031151 Gm11444 protein_coding protein_coding MGP_C3HHeJ_T0032074.1 MGP_C3HHeJ_G0018905.1 mouse_genomes_project 11 102107714 102119591 + MGP_C3HHeJ_P0032074 Fkbp10 protein_coding protein_coding MGP_C3HHeJ_T0032075.1 MGP_C3HHeJ_G0018905.1 mouse_genomes_project 11 102107783 102118879 + MGP_C3HHeJ_P0032075 Fkbp10 protein_coding protein_coding MGP_C3HHeJ_T0032076.1 MGP_C3HHeJ_G0018905.1 mouse_genomes_project 11 102107862 102116856 + MGP_C3HHeJ_P0032076 Fkbp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032077.1 MGP_C3HHeJ_G0018905.1 mouse_genomes_project 11 102115190 102116463 + Fkbp10 protein_coding retained_intron MGP_C3HHeJ_T0032080.1 MGP_C3HHeJ_G0018905.1 mouse_genomes_project 11 102117804 102119067 + Fkbp10 protein_coding retained_intron MGP_C3HHeJ_T0028094.1 MGP_C3HHeJ_G0017859.1 mouse_genomes_project 11 26984459 27015783 - MGP_C3HHeJ_P0028094 Cfap36 protein_coding protein_coding MGP_C3HHeJ_T0028095.1 MGP_C3HHeJ_G0017859.1 mouse_genomes_project 11 26988700 27015661 - Cfap36 protein_coding retained_intron MGP_C3HHeJ_T0028096.1 MGP_C3HHeJ_G0017859.1 mouse_genomes_project 11 26993591 27015295 - MGP_C3HHeJ_P0028096 Cfap36 protein_coding protein_coding MGP_C3HHeJ_T0028097.1 MGP_C3HHeJ_G0017859.1 mouse_genomes_project 11 27012201 27015441 - Cfap36 protein_coding retained_intron MGP_C3HHeJ_T0028098.1 MGP_C3HHeJ_G0017859.1 mouse_genomes_project 11 27013110 27015565 - Cfap36 protein_coding retained_intron MGP_C3HHeJ_T0033286.1 MGP_C3HHeJ_G0019155.1 mouse_genomes_project 11 118510918 118513342 + MGP_C3HHeJ_P0033286 Smim6 protein_coding protein_coding MGP_C3HHeJ_T0029867.1 MGP_C3HHeJ_G0018323.1 mouse_genomes_project 11 69817336 69822966 + MGP_C3HHeJ_P0029867 Ybx2 protein_coding protein_coding MGP_C3HHeJ_T0029868.1 MGP_C3HHeJ_G0018323.1 mouse_genomes_project 11 69817688 69822959 + MGP_C3HHeJ_P0029868 Ybx2 protein_coding protein_coding MGP_C3HHeJ_T0029869.1 MGP_C3HHeJ_G0018323.1 mouse_genomes_project 11 69821208 69822024 + Ybx2 protein_coding retained_intron MGP_C3HHeJ_T0029870.1 MGP_C3HHeJ_G0018323.1 mouse_genomes_project 11 69821905 69822957 + Ybx2 protein_coding retained_intron MGP_C3HHeJ_T0032053.1 MGP_C3HHeJ_G0018900.1 mouse_genomes_project 11 102005367 102010058 + MGP_C3HHeJ_P0032053 Eif1 protein_coding protein_coding MGP_C3HHeJ_T0032054.1 MGP_C3HHeJ_G0018900.1 mouse_genomes_project 11 102005691 102006472 + MGP_C3HHeJ_P0032054 Eif1 protein_coding protein_coding MGP_C3HHeJ_T0032055.1 MGP_C3HHeJ_G0018900.1 mouse_genomes_project 11 102006000 102006832 + Eif1 protein_coding processed_transcript MGP_C3HHeJ_T0032056.1 MGP_C3HHeJ_G0018900.1 mouse_genomes_project 11 102006190 102009711 + MGP_C3HHeJ_P0032056 Eif1 protein_coding protein_coding MGP_C3HHeJ_T0027486.1 MGP_C3HHeJ_G0017719.1 mouse_genomes_project 11 784153 788313 + MGP_C3HHeJ_P0027486 Dusp18 protein_coding protein_coding MGP_C3HHeJ_T0027487.1 MGP_C3HHeJ_G0017719.1 mouse_genomes_project 11 784153 790256 + MGP_C3HHeJ_P0027487 Dusp18 protein_coding protein_coding MGP_C3HHeJ_T0031923.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100306097 100321390 + MGP_C3HHeJ_P0031923 Msl1 protein_coding protein_coding MGP_C3HHeJ_T0031924.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100306372 100311633 + MGP_C3HHeJ_P0031924 Msl1 protein_coding protein_coding MGP_C3HHeJ_T0031925.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100306381 100319973 + MGP_C3HHeJ_P0031925 Msl1 protein_coding protein_coding MGP_C3HHeJ_T0031926.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100309234 100319146 + MGP_C3HHeJ_P0031926 Msl1 protein_coding protein_coding MGP_C3HHeJ_T0031927.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100310745 100314703 + MGP_C3HHeJ_P0031927 Msl1 protein_coding protein_coding MGP_C3HHeJ_T0031928.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100312857 100318971 + MGP_C3HHeJ_P0031928 Msl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031929.1 MGP_C3HHeJ_G0018828.1 mouse_genomes_project 11 100314854 100319318 + Msl1 protein_coding processed_transcript MGP_C3HHeJ_T0032434.1 MGP_C3HHeJ_G0018980.1 mouse_genomes_project 11 104126425 104130730 + MGP_C3HHeJ_P0032434 Tmub2 protein_coding protein_coding MGP_C3HHeJ_T0032435.1 MGP_C3HHeJ_G0018980.1 mouse_genomes_project 11 104126433 104129704 + Tmub2 protein_coding processed_transcript MGP_C3HHeJ_T0032436.1 MGP_C3HHeJ_G0018980.1 mouse_genomes_project 11 104126433 104130730 + MGP_C3HHeJ_P0032436 Tmub2 protein_coding protein_coding MGP_C3HHeJ_T0032437.1 MGP_C3HHeJ_G0018980.1 mouse_genomes_project 11 104126445 104128884 + Tmub2 protein_coding processed_transcript MGP_C3HHeJ_T0032438.1 MGP_C3HHeJ_G0018980.1 mouse_genomes_project 11 104126690 104130730 + MGP_C3HHeJ_P0032438 Tmub2 protein_coding protein_coding MGP_C3HHeJ_T0009671.1 MGP_C3HHeJ_G0007804.1 mouse_genomes_project 11 107626502 107626621 + Gm23990 miRNA miRNA MGP_C3HHeJ_T0009570.1 MGP_C3HHeJ_G0007703.1 mouse_genomes_project 11 19023758 19023847 - Gm22990 miRNA miRNA MGP_C3HHeJ_T0003081.1 MGP_C3HHeJ_G0002863.1 mouse_genomes_project 11 44603299 44606634 - Gm16033 antisense antisense MGP_C3HHeJ_T0003244.1 MGP_C3HHeJ_G0002996.1 mouse_genomes_project 11 106525290 106526280 - Gm11665 antisense antisense MGP_C3HHeJ_T0032928.1 MGP_C3HHeJ_G0019080.1 mouse_genomes_project 11 111335803 111340890 - MGP_C3HHeJ_P0032928 E030025P04Rik protein_coding protein_coding MGP_C3HHeJ_T0033068.1 MGP_C3HHeJ_G0019112.1 mouse_genomes_project 11 117285592 117295294 + MGP_C3HHeJ_P0033068 Gpr142 protein_coding protein_coding MGP_C3HHeJ_T0033069.1 MGP_C3HHeJ_G0019112.1 mouse_genomes_project 11 117285592 117295294 + MGP_C3HHeJ_P0033069 Gpr142 protein_coding protein_coding MGP_C3HHeJ_T0009604.1 MGP_C3HHeJ_G0007737.1 mouse_genomes_project 11 64213390 64213536 - Gm24275 miRNA miRNA MGP_C3HHeJ_T0029450.1 MGP_C3HHeJ_G0018221.1 mouse_genomes_project 11 62729031 62761111 + MGP_C3HHeJ_P0029450 Pmp22 protein_coding protein_coding MGP_C3HHeJ_T0029451.1 MGP_C3HHeJ_G0018221.1 mouse_genomes_project 11 62731561 62761112 + MGP_C3HHeJ_P0029451 Pmp22 protein_coding protein_coding MGP_C3HHeJ_T0029452.1 MGP_C3HHeJ_G0018221.1 mouse_genomes_project 11 62732618 62760049 + MGP_C3HHeJ_P0029452 Pmp22 protein_coding protein_coding MGP_C3HHeJ_T0029453.1 MGP_C3HHeJ_G0018221.1 mouse_genomes_project 11 62732852 62734539 + Pmp22 protein_coding processed_transcript MGP_C3HHeJ_T0029454.1 MGP_C3HHeJ_G0018221.1 mouse_genomes_project 11 62733117 62760131 + MGP_C3HHeJ_P0029454 Pmp22 protein_coding protein_coding MGP_C3HHeJ_T0030501.1 MGP_C3HHeJ_G0018478.1 mouse_genomes_project 11 76185160 76188820 + MGP_C3HHeJ_P0030501 1700016K19Rik protein_coding protein_coding MGP_C3HHeJ_T0003178.1 MGP_C3HHeJ_G0002945.1 mouse_genomes_project 11 85924499 85924948 + Appbp2os antisense pseudogene MGP_C3HHeJ_T0003179.1 MGP_C3HHeJ_G0002945.1 mouse_genomes_project 11 85924895 85928032 + Appbp2os antisense antisense MGP_C3HHeJ_T0100057.1 MGP_C3HHeJ_G0038251.1 mouse_genomes_project 11 122542870 122542950 + Gm23663 snoRNA snoRNA MGP_C3HHeJ_T0027715.1 MGP_C3HHeJ_G0017772.1 mouse_genomes_project 11 3257408 3266260 - MGP_C3HHeJ_P0027715 Ddx56 protein_coding protein_coding MGP_C3HHeJ_T0027716.1 MGP_C3HHeJ_G0017772.1 mouse_genomes_project 11 3263792 3264880 - Ddx56 protein_coding retained_intron MGP_C3HHeJ_T0027717.1 MGP_C3HHeJ_G0017772.1 mouse_genomes_project 11 3264124 3266260 - MGP_C3HHeJ_P0027717 Ddx56 protein_coding protein_coding MGP_C3HHeJ_T0027718.1 MGP_C3HHeJ_G0017772.1 mouse_genomes_project 11 3265533 3266234 - Ddx56 protein_coding retained_intron MGP_C3HHeJ_T0003102.1 MGP_C3HHeJ_G0002882.1 mouse_genomes_project 11 54271085 54274049 + Slc36a3os antisense antisense MGP_C3HHeJ_T0012634.1 MGP_C3HHeJ_G0010738.1 mouse_genomes_project 11 109275991 109276324 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009645.1 MGP_C3HHeJ_G0007778.1 mouse_genomes_project 11 89233283 89233375 + Mir378b miRNA miRNA MGP_C3HHeJ_T0028686.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50480478 50500157 + MGP_C3HHeJ_P0028686 Phykpl protein_coding protein_coding MGP_C3HHeJ_T0028687.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50480478 50498922 + MGP_C3HHeJ_P0028687 Phykpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028688.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50480510 50496997 + MGP_C3HHeJ_P0028688 Phykpl protein_coding protein_coding MGP_C3HHeJ_T0028689.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50480524 50492679 + Phykpl protein_coding retained_intron MGP_C3HHeJ_T0028690.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50480528 50483039 + Phykpl protein_coding retained_intron MGP_C3HHeJ_T0028691.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50480532 50489023 + Phykpl protein_coding retained_intron MGP_C3HHeJ_T0028692.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50487163 50489598 + Phykpl protein_coding retained_intron MGP_C3HHeJ_T0028693.1 MGP_C3HHeJ_G0018019.1 mouse_genomes_project 11 50494935 50496736 + Phykpl protein_coding retained_intron MGP_C3HHeJ_T0029998.1 MGP_C3HHeJ_G0018348.1 mouse_genomes_project 11 70363096 70364910 + MGP_C3HHeJ_P0029998 Med11 protein_coding protein_coding MGP_C3HHeJ_T0029999.1 MGP_C3HHeJ_G0018348.1 mouse_genomes_project 11 70363096 70364423 + MGP_C3HHeJ_P0029999 Med11 protein_coding protein_coding MGP_C3HHeJ_T0030000.1 MGP_C3HHeJ_G0018348.1 mouse_genomes_project 11 70363109 70364747 + Med11 protein_coding retained_intron MGP_C3HHeJ_T0029080.1 MGP_C3HHeJ_G0018144.1 mouse_genomes_project 11 58544626 58548061 + MGP_C3HHeJ_P0029080 Mrpl55 protein_coding protein_coding MGP_C3HHeJ_T0029081.1 MGP_C3HHeJ_G0018144.1 mouse_genomes_project 11 58544629 58548022 + MGP_C3HHeJ_P0029081 Mrpl55 protein_coding protein_coding MGP_C3HHeJ_T0029082.1 MGP_C3HHeJ_G0018144.1 mouse_genomes_project 11 58544632 58548268 + MGP_C3HHeJ_P0029082 Mrpl55 protein_coding protein_coding MGP_C3HHeJ_T0029083.1 MGP_C3HHeJ_G0018144.1 mouse_genomes_project 11 58544645 58548136 + MGP_C3HHeJ_P0029083 Mrpl55 protein_coding protein_coding MGP_C3HHeJ_T0029084.1 MGP_C3HHeJ_G0018144.1 mouse_genomes_project 11 58544678 58548022 + MGP_C3HHeJ_P0029084 Mrpl55 protein_coding protein_coding MGP_C3HHeJ_T0029594.1 MGP_C3HHeJ_G0018260.1 mouse_genomes_project 11 68700957 68704076 + MGP_C3HHeJ_P0029594 Rpl26 protein_coding protein_coding MGP_C3HHeJ_T0029595.1 MGP_C3HHeJ_G0018260.1 mouse_genomes_project 11 68700984 68704052 + MGP_C3HHeJ_P0029595 Rpl26 protein_coding protein_coding MGP_C3HHeJ_T0029596.1 MGP_C3HHeJ_G0018260.1 mouse_genomes_project 11 68701001 68702676 + MGP_C3HHeJ_P0029596 Rpl26 protein_coding protein_coding MGP_C3HHeJ_T0029597.1 MGP_C3HHeJ_G0018260.1 mouse_genomes_project 11 68701009 68704075 + MGP_C3HHeJ_P0029597 Rpl26 protein_coding protein_coding MGP_C3HHeJ_T0029598.1 MGP_C3HHeJ_G0018260.1 mouse_genomes_project 11 68702226 68704075 + Rpl26 protein_coding retained_intron MGP_C3HHeJ_T0029599.1 MGP_C3HHeJ_G0018260.1 mouse_genomes_project 11 68702590 68706666 + Rpl26 protein_coding processed_transcript MGP_C3HHeJ_T0028050.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23208825 23251988 - 5730522E02Rik protein_coding processed_transcript MGP_C3HHeJ_T0028051.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23208878 23223266 - 5730522E02Rik protein_coding processed_transcript MGP_C3HHeJ_T0028052.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23220844 23832033 - 5730522E02Rik protein_coding processed_transcript MGP_C3HHeJ_T0028053.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23222254 23832036 - MGP_C3HHeJ_P0028053 5730522E02Rik protein_coding protein_coding MGP_C3HHeJ_T0028054.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23238866 23255863 - 5730522E02Rik protein_coding processed_transcript MGP_C3HHeJ_T0028055.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23251755 23383139 - MGP_C3HHeJ_P0028055 5730522E02Rik protein_coding protein_coding MGP_C3HHeJ_T0028056.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23460960 23695814 - 5730522E02Rik protein_coding processed_transcript MGP_C3HHeJ_T0028057.1 MGP_C3HHeJ_G0017851.1 mouse_genomes_project 11 23724569 23832227 - 5730522E02Rik protein_coding processed_transcript MGP_C3HHeJ_T0027616.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2012669 2057480 - MGP_C3HHeJ_P0027616 Ewsr1 protein_coding protein_coding MGP_C3HHeJ_T0027617.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2012678 2057281 - MGP_C3HHeJ_P0027617 Ewsr1 protein_coding protein_coding MGP_C3HHeJ_T0027618.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2012877 2057256 - MGP_C3HHeJ_P0027618 Ewsr1 protein_coding protein_coding MGP_C3HHeJ_T0027619.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2012954 2013872 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0027620.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2013932 2027590 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0027621.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2014242 2026583 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0027622.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2014345 2027961 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0027623.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2014345 2030402 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0027624.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2028479 2057280 - MGP_C3HHeJ_P0027624 Ewsr1 protein_coding protein_coding MGP_C3HHeJ_T0027625.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2030083 2034988 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0027626.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2039410 2057310 - MGP_C3HHeJ_P0027626 Ewsr1 protein_coding protein_coding MGP_C3HHeJ_T0027627.1 MGP_C3HHeJ_G0017750.1 mouse_genomes_project 11 2042483 2057281 - Ewsr1 protein_coding processed_transcript MGP_C3HHeJ_T0030996.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83881161 83915003 + MGP_C3HHeJ_P0030996 Ap2b1 protein_coding protein_coding MGP_C3HHeJ_T0030997.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83884617 84000280 + MGP_C3HHeJ_P0030997 Ap2b1 protein_coding protein_coding MGP_C3HHeJ_T0030998.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83884837 83930127 + Ap2b1 protein_coding retained_intron MGP_C3HHeJ_T0030999.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83884868 83993851 + MGP_C3HHeJ_P0030999 Ap2b1 protein_coding protein_coding MGP_C3HHeJ_T0031000.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83884908 83998256 + MGP_C3HHeJ_P0031000 Ap2b1 protein_coding protein_coding MGP_C3HHeJ_T0031001.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83885080 83898526 + MGP_C3HHeJ_P0031001 Ap2b1 protein_coding protein_coding MGP_C3HHeJ_T0031002.1 MGP_C3HHeJ_G0018599.1 mouse_genomes_project 11 83890384 83997888 + MGP_C3HHeJ_P0031002 Ap2b1 protein_coding protein_coding MGP_C3HHeJ_T0101653.1 MGP_C3HHeJ_G0039619.1 mouse_genomes_project 11 95975923 95976702 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0031088.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85503160 85549796 - MGP_C3HHeJ_P0031088 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031089.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85503160 85549768 - MGP_C3HHeJ_P0031089 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031090.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85503160 85549717 - MGP_C3HHeJ_P0031090 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031091.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85503605 85542846 - MGP_C3HHeJ_P0031091 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031092.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85503660 85549625 - MGP_C3HHeJ_P0031092 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031093.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85503771 85549719 - MGP_C3HHeJ_P0031093 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031094.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85504935 85508148 - MGP_C3HHeJ_P0031094 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031095.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85505311 85549704 - MGP_C3HHeJ_P0031095 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031096.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85508100 85509664 - Ggnbp2 protein_coding processed_transcript MGP_C3HHeJ_T0031097.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85524064 85530159 - Ggnbp2 protein_coding processed_transcript MGP_C3HHeJ_T0031098.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85525634 85532329 - Ggnbp2 protein_coding retained_intron MGP_C3HHeJ_T0031099.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85532388 85549470 - MGP_C3HHeJ_P0031099 Ggnbp2 protein_coding protein_coding MGP_C3HHeJ_T0031100.1 MGP_C3HHeJ_G0018627.1 mouse_genomes_project 11 85541523 85549758 - Ggnbp2 protein_coding processed_transcript MGP_C3HHeJ_T0012658.1 MGP_C3HHeJ_G0010762.1 mouse_genomes_project 11 120637610 120638034 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006309.1 MGP_C3HHeJ_G0005251.1 mouse_genomes_project 11 124720478 124720680 + Gm29513 lincRNA lincRNA MGP_C3HHeJ_T0030630.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78050307 78155889 + MGP_C3HHeJ_P0030630 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030631.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78050345 78111538 + MGP_C3HHeJ_P0030631 Myo18a protein_coding unknown_likely_coding MGP_C3HHeJ_T0030632.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78050362 78068575 + Myo18a protein_coding retained_intron MGP_C3HHeJ_T0030633.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78053317 78065786 + MGP_C3HHeJ_P0030633 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030634.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78054450 78155889 + MGP_C3HHeJ_P0030634 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030635.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78059861 78155889 + MGP_C3HHeJ_P0030635 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030636.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78065644 78155889 + MGP_C3HHeJ_P0030636 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030637.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78065644 78155889 + MGP_C3HHeJ_P0030637 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030638.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78065672 78155052 + MGP_C3HHeJ_P0030638 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030639.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78065672 78155051 + MGP_C3HHeJ_P0030639 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030640.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78065695 78154757 + MGP_C3HHeJ_P0030640 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030642.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78091347 78155746 + MGP_C3HHeJ_P0030642 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030643.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78091386 78102530 + MGP_C3HHeJ_P0030643 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030644.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78091399 78155889 + MGP_C3HHeJ_P0030644 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030645.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78091399 78155018 + MGP_C3HHeJ_P0030645 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030646.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78091424 78154746 + MGP_C3HHeJ_P0030646 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030647.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78091424 78154965 + MGP_C3HHeJ_P0030647 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030648.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78101475 78155889 + MGP_C3HHeJ_P0030648 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030649.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78114533 78117621 + Myo18a protein_coding processed_transcript MGP_C3HHeJ_T0030650.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78128089 78131571 + Myo18a protein_coding processed_transcript MGP_C3HHeJ_T0030651.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78130935 78134873 + Myo18a protein_coding retained_intron MGP_C3HHeJ_T0030652.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78139445 78143363 + Myo18a protein_coding retained_intron MGP_C3HHeJ_T0030653.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78140650 78143234 + Myo18a protein_coding retained_intron MGP_C3HHeJ_T0030654.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78143772 78149271 + MGP_C3HHeJ_P0030654 Myo18a protein_coding protein_coding MGP_C3HHeJ_T0030655.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78147387 78154985 + Myo18a protein_coding retained_intron MGP_C3HHeJ_T0030656.1 MGP_C3HHeJ_G0018508.1 mouse_genomes_project 11 78150195 78155104 + Myo18a protein_coding processed_transcript MGP_C3HHeJ_T0029052.1 MGP_C3HHeJ_G0018136.1 mouse_genomes_project 11 58277891 58278512 + MGP_C3HHeJ_P0029052 Hist3h2ba protein_coding protein_coding MGP_C3HHeJ_T0031649.1 MGP_C3HHeJ_G0018766.1 mouse_genomes_project 11 98130245 98140218 - MGP_C3HHeJ_P0031649 Snx11 protein_coding protein_coding MGP_C3HHeJ_T0031650.1 MGP_C3HHeJ_G0018766.1 mouse_genomes_project 11 98130567 98140246 - MGP_C3HHeJ_P0031650 Snx11 protein_coding protein_coding MGP_C3HHeJ_T0031651.1 MGP_C3HHeJ_G0018766.1 mouse_genomes_project 11 98132581 98140179 - MGP_C3HHeJ_P0031651 Snx11 protein_coding protein_coding MGP_C3HHeJ_T0031652.1 MGP_C3HHeJ_G0018766.1 mouse_genomes_project 11 98132788 98133741 - Snx11 protein_coding processed_transcript MGP_C3HHeJ_T0031653.1 MGP_C3HHeJ_G0018766.1 mouse_genomes_project 11 98135227 98137328 - Snx11 protein_coding processed_transcript MGP_C3HHeJ_T0031654.1 MGP_C3HHeJ_G0018766.1 mouse_genomes_project 11 98138986 98140207 - Snx11 protein_coding processed_transcript MGP_C3HHeJ_T0033677.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122403173 122620468 + Rptor protein_coding retained_intron MGP_C3HHeJ_T0033678.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122403263 122578593 + Rptor protein_coding retained_intron MGP_C3HHeJ_T0033679.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122403283 122642331 + Rptor protein_coding retained_intron MGP_C3HHeJ_T0033680.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122403417 122698458 + MGP_C3HHeJ_P0033680 Rptor protein_coding protein_coding MGP_C3HHeJ_T0033681.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122403966 122698627 + MGP_C3HHeJ_P0033681 Rptor protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033682.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122459107 122663747 + Rptor protein_coding retained_intron MGP_C3HHeJ_T0033683.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122595112 122644239 + MGP_C3HHeJ_P0033683 Rptor protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033684.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122607591 122666153 + Rptor protein_coding retained_intron MGP_C3HHeJ_T0033685.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122620238 122653424 + MGP_C3HHeJ_P0033685 Rptor protein_coding protein_coding MGP_C3HHeJ_T0033686.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122653384 122695204 + MGP_C3HHeJ_P0033686 Rptor protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033687.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122653434 122654928 + Rptor protein_coding retained_intron MGP_C3HHeJ_T0033688.1 MGP_C3HHeJ_G0019234.1 mouse_genomes_project 11 122654569 122684334 + MGP_C3HHeJ_P0033688 Rptor protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028985.1 MGP_C3HHeJ_G0018098.1 mouse_genomes_project 11 57452051 57476352 + MGP_C3HHeJ_P0028985 Irgm2 protein_coding protein_coding MGP_C3HHeJ_T0028986.1 MGP_C3HHeJ_G0018098.1 mouse_genomes_project 11 57452051 57476344 + MGP_C3HHeJ_P0028986 Irgm2 protein_coding protein_coding MGP_C3HHeJ_T0033011.1 MGP_C3HHeJ_G0019101.1 mouse_genomes_project 11 116042565 116049230 + MGP_C3HHeJ_P0033011 Sstr2 protein_coding protein_coding MGP_C3HHeJ_T0033012.1 MGP_C3HHeJ_G0019101.1 mouse_genomes_project 11 116042699 116049100 + MGP_C3HHeJ_P0033012 Sstr2 protein_coding protein_coding MGP_C3HHeJ_T0033013.1 MGP_C3HHeJ_G0019101.1 mouse_genomes_project 11 116047461 116048841 + MGP_C3HHeJ_P0033013 Sstr2 protein_coding protein_coding MGP_C3HHeJ_T0017040.1 MGP_C3HHeJ_G0014975.1 mouse_genomes_project 11 109550975 109559281 + Gm11714 processed_transcript processed_transcript MGP_C3HHeJ_T0098792.1 MGP_C3HHeJ_G0036986.1 mouse_genomes_project 11 79161616 79161703 + Gm23219 snRNA snRNA MGP_C3HHeJ_T0006175.1 MGP_C3HHeJ_G0005151.1 mouse_genomes_project 11 61402609 61404774 + Gm26964 lincRNA lincRNA MGP_C3HHeJ_T0098809.1 MGP_C3HHeJ_G0037003.1 mouse_genomes_project 11 94577816 94577923 - Gm24856 snRNA snRNA MGP_C3HHeJ_T0032752.1 MGP_C3HHeJ_G0019045.1 mouse_genomes_project 11 108195056 108199110 - MGP_C3HHeJ_P0032752 Limd2 protein_coding protein_coding MGP_C3HHeJ_T0032753.1 MGP_C3HHeJ_G0019045.1 mouse_genomes_project 11 108197114 108198210 - Limd2 protein_coding processed_transcript MGP_C3HHeJ_T0032754.1 MGP_C3HHeJ_G0019045.1 mouse_genomes_project 11 108197231 108198728 - MGP_C3HHeJ_P0032754 Limd2 protein_coding protein_coding MGP_C3HHeJ_T0032755.1 MGP_C3HHeJ_G0019045.1 mouse_genomes_project 11 108197451 108199828 - MGP_C3HHeJ_P0032755 Limd2 protein_coding protein_coding MGP_C3HHeJ_T0101635.1 MGP_C3HHeJ_G0039601.1 mouse_genomes_project 11 57750386 57751326 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0031324.1 MGP_C3HHeJ_G0018678.1 mouse_genomes_project 11 89157182 89158384 + MGP_C3HHeJ_P0031324 Ccdc182 protein_coding protein_coding MGP_C3HHeJ_T0033756.1 MGP_C3HHeJ_G0019247.1 mouse_genomes_project 11 123209139 123271057 - MGP_C3HHeJ_P0033756 Nploc4 protein_coding protein_coding MGP_C3HHeJ_T0033757.1 MGP_C3HHeJ_G0019247.1 mouse_genomes_project 11 123209139 123271057 - MGP_C3HHeJ_P0033757 Nploc4 protein_coding protein_coding MGP_C3HHeJ_T0033758.1 MGP_C3HHeJ_G0019247.1 mouse_genomes_project 11 123211087 123212273 - Nploc4 protein_coding processed_transcript MGP_C3HHeJ_T0033759.1 MGP_C3HHeJ_G0019247.1 mouse_genomes_project 11 123235034 123254977 - Nploc4 protein_coding processed_transcript MGP_C3HHeJ_T0033760.1 MGP_C3HHeJ_G0019247.1 mouse_genomes_project 11 123244418 123250354 - Nploc4 protein_coding processed_transcript MGP_C3HHeJ_T0028438.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910097 44914030 + MGP_C3HHeJ_P0028438 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028439.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910121 44913936 + MGP_C3HHeJ_P0028439 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028440.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910124 44914699 + MGP_C3HHeJ_P0028440 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028441.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910133 44915893 + MGP_C3HHeJ_P0028441 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028442.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910143 44914272 + MGP_C3HHeJ_P0028442 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028443.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910146 44915893 + MGP_C3HHeJ_P0028443 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028444.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910150 44914222 + MGP_C3HHeJ_P0028444 Med7 protein_coding protein_coding MGP_C3HHeJ_T0028445.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44910177 44913115 + Med7 protein_coding processed_transcript MGP_C3HHeJ_T0028446.1 MGP_C3HHeJ_G0017949.1 mouse_genomes_project 11 44912824 44914150 + MGP_C3HHeJ_P0028446 Med7 protein_coding protein_coding MGP_C3HHeJ_T0012597.1 MGP_C3HHeJ_G0010701.1 mouse_genomes_project 11 94875070 94875534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006129.1 MGP_C3HHeJ_G0005110.1 mouse_genomes_project 11 26529931 26588868 + Gm12082 lincRNA lincRNA MGP_C3HHeJ_T0031169.1 MGP_C3HHeJ_G0018642.1 mouse_genomes_project 11 86993680 87085942 - MGP_C3HHeJ_P0031169 Med13 protein_coding protein_coding MGP_C3HHeJ_T0031170.1 MGP_C3HHeJ_G0018642.1 mouse_genomes_project 11 87000162 87006222 - Med13 protein_coding processed_transcript MGP_C3HHeJ_T0031171.1 MGP_C3HHeJ_G0018642.1 mouse_genomes_project 11 87002989 87006614 - Med13 protein_coding retained_intron MGP_C3HHeJ_T0031172.1 MGP_C3HHeJ_G0018642.1 mouse_genomes_project 11 87059362 87060540 - Med13 protein_coding retained_intron MGP_C3HHeJ_T0003285.1 MGP_C3HHeJ_G0003030.1 mouse_genomes_project 11 120845878 120849303 + Gm11738 antisense antisense MGP_C3HHeJ_T0099996.1 MGP_C3HHeJ_G0038190.1 mouse_genomes_project 11 18294486 18294615 - Gm22807 snoRNA snoRNA MGP_C3HHeJ_T0032171.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102733476 102745351 + Atp6v0a1 protein_coding processed_transcript MGP_C3HHeJ_T0032172.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102733476 102768840 + Atp6v0a1 protein_coding processed_transcript MGP_C3HHeJ_T0032173.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102733476 102786839 + MGP_C3HHeJ_P0032173 Atp6v0a1 protein_coding protein_coding MGP_C3HHeJ_T0032174.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102733476 102788134 + MGP_C3HHeJ_P0032174 Atp6v0a1 protein_coding protein_coding MGP_C3HHeJ_T0032175.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102733511 102788128 + MGP_C3HHeJ_P0032175 Atp6v0a1 protein_coding protein_coding MGP_C3HHeJ_T0032176.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102734681 102744456 + MGP_C3HHeJ_P0032176 Atp6v0a1 protein_coding protein_coding MGP_C3HHeJ_T0032177.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102735845 102788134 + MGP_C3HHeJ_P0032177 Atp6v0a1 protein_coding protein_coding MGP_C3HHeJ_T0032178.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102745077 102751455 + Atp6v0a1 protein_coding processed_transcript MGP_C3HHeJ_T0032179.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102763862 102773653 + Atp6v0a1 protein_coding processed_transcript MGP_C3HHeJ_T0032180.1 MGP_C3HHeJ_G0018926.1 mouse_genomes_project 11 102767831 102768843 + Atp6v0a1 protein_coding processed_transcript MGP_C3HHeJ_T0003070.1 MGP_C3HHeJ_G0002852.1 mouse_genomes_project 11 27895738 27897463 + Gm29237 antisense antisense MGP_C3HHeJ_T0032297.1 MGP_C3HHeJ_G0018955.1 mouse_genomes_project 11 103223631 103231115 - MGP_C3HHeJ_P0032297 Vat1 protein_coding protein_coding MGP_C3HHeJ_T0032021.1 MGP_C3HHeJ_G0018877.1 mouse_genomes_project 11 101484148 101485244 + MGP_C3HHeJ_P0032021 protein_coding protein_coding MGP_C3HHeJ_T0029122.1 MGP_C3HHeJ_G0018158.1 mouse_genomes_project 11 59148673 59152420 - Pld6 protein_coding processed_transcript MGP_C3HHeJ_T0029123.1 MGP_C3HHeJ_G0018158.1 mouse_genomes_project 11 59149476 59152417 - MGP_C3HHeJ_P0029123 Pld6 protein_coding protein_coding MGP_C3HHeJ_T0003260.1 MGP_C3HHeJ_G0003010.1 mouse_genomes_project 11 110349904 110362200 + Gm11655 antisense antisense MGP_C3HHeJ_T0031435.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95474234 95511231 - MGP_C3HHeJ_P0031435 Luc7l3 protein_coding protein_coding MGP_C3HHeJ_T0031436.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95478464 95484442 - MGP_C3HHeJ_P0031436 Luc7l3 protein_coding protein_coding MGP_C3HHeJ_T0031437.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95478732 95480626 - MGP_C3HHeJ_P0031437 Luc7l3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031438.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95480176 95511168 - MGP_C3HHeJ_P0031438 Luc7l3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031439.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95484381 95485599 - Luc7l3 protein_coding retained_intron MGP_C3HHeJ_T0031440.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95484389 95486430 - Luc7l3 protein_coding processed_transcript MGP_C3HHeJ_T0031441.1 MGP_C3HHeJ_G0018708.1 mouse_genomes_project 11 95484430 95489110 - Luc7l3 protein_coding retained_intron MGP_C3HHeJ_T0032788.1 MGP_C3HHeJ_G0019054.1 mouse_genomes_project 11 108339555 108341150 - MGP_C3HHeJ_P0032788 Gh protein_coding protein_coding MGP_C3HHeJ_T0012385.1 MGP_C3HHeJ_G0010489.1 mouse_genomes_project 11 14643879 14644722 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031602.1 MGP_C3HHeJ_G0018749.1 mouse_genomes_project 11 97350443 97356633 + MGP_C3HHeJ_P0031602 Gip protein_coding protein_coding MGP_C3HHeJ_T0031603.1 MGP_C3HHeJ_G0018749.1 mouse_genomes_project 11 97350944 97356633 + MGP_C3HHeJ_P0031603 Gip protein_coding protein_coding MGP_C3HHeJ_T0012503.1 MGP_C3HHeJ_G0010607.1 mouse_genomes_project 11 57800455 57800739 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003063.1 MGP_C3HHeJ_G0002846.1 mouse_genomes_project 11 16377547 16378885 + Gm16141 antisense antisense MGP_C3HHeJ_T0030891.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80815853 80828687 + MGP_C3HHeJ_P0030891 Zfp207 protein_coding protein_coding MGP_C3HHeJ_T0030892.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80815853 80838173 + MGP_C3HHeJ_P0030892 Zfp207 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030893.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80815877 80828690 + MGP_C3HHeJ_P0030893 Zfp207 protein_coding protein_coding MGP_C3HHeJ_T0030894.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80815905 80826725 + MGP_C3HHeJ_P0030894 Zfp207 protein_coding protein_coding MGP_C3HHeJ_T0030895.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80815971 80828008 + MGP_C3HHeJ_P0030895 Zfp207 protein_coding protein_coding MGP_C3HHeJ_T0030896.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80818423 80824350 + MGP_C3HHeJ_P0030896 Zfp207 protein_coding protein_coding MGP_C3HHeJ_T0030897.1 MGP_C3HHeJ_G0018566.1 mouse_genomes_project 11 80821601 80837261 + MGP_C3HHeJ_P0030897 Zfp207 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009619.1 MGP_C3HHeJ_G0007752.1 mouse_genomes_project 11 70349006 70349070 + Mir7115 miRNA miRNA MGP_C3HHeJ_T0003090.1 MGP_C3HHeJ_G0002871.1 mouse_genomes_project 11 50933208 50934267 + Gm12204 antisense antisense MGP_C3HHeJ_T0006138.1 MGP_C3HHeJ_G0005117.1 mouse_genomes_project 11 30866282 30888352 - Gm12111 lincRNA lincRNA MGP_C3HHeJ_T0098270.1 MGP_C3HHeJ_G0036482.1 mouse_genomes_project 11 118782079 118782206 - Gm26413 scaRNA scaRNA MGP_C3HHeJ_T0029519.1 MGP_C3HHeJ_G0018242.1 mouse_genomes_project 11 66996687 67029870 + MGP_C3HHeJ_P0029519 Myh8 protein_coding protein_coding MGP_C3HHeJ_T0029520.1 MGP_C3HHeJ_G0018242.1 mouse_genomes_project 11 66996981 67015160 + Myh8 protein_coding retained_intron MGP_C3HHeJ_T0029521.1 MGP_C3HHeJ_G0018242.1 mouse_genomes_project 11 66996981 67001709 + MGP_C3HHeJ_P0029521 Myh8 protein_coding protein_coding MGP_C3HHeJ_T0029522.1 MGP_C3HHeJ_G0018242.1 mouse_genomes_project 11 66999552 67012091 + Myh8 protein_coding retained_intron MGP_C3HHeJ_T0028542.1 MGP_C3HHeJ_G0017982.1 mouse_genomes_project 11 48194483 48196371 + MGP_C3HHeJ_P0028542 protein_coding protein_coding MGP_C3HHeJ_T0012586.1 MGP_C3HHeJ_G0010690.1 mouse_genomes_project 11 88766241 88766414 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030838.1 MGP_C3HHeJ_G0018553.1 mouse_genomes_project 11 79905486 79914873 - MGP_C3HHeJ_P0030838 protein_coding protein_coding MGP_C3HHeJ_T0012425.1 MGP_C3HHeJ_G0010529.1 mouse_genomes_project 11 25706672 25709753 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017039.1 MGP_C3HHeJ_G0014974.1 mouse_genomes_project 11 107393406 107422485 + Gm11638 processed_transcript processed_transcript MGP_C3HHeJ_T0032676.1 MGP_C3HHeJ_G0019027.1 mouse_genomes_project 11 106469821 106518475 - MGP_C3HHeJ_P0032676 Cdc27 protein_coding protein_coding MGP_C3HHeJ_T0032677.1 MGP_C3HHeJ_G0019027.1 mouse_genomes_project 11 106472017 106518384 - MGP_C3HHeJ_P0032677 Cdc27 protein_coding protein_coding MGP_C3HHeJ_T0032678.1 MGP_C3HHeJ_G0019027.1 mouse_genomes_project 11 106475427 106481075 - Cdc27 protein_coding processed_transcript MGP_C3HHeJ_T0032679.1 MGP_C3HHeJ_G0019027.1 mouse_genomes_project 11 106488119 106518470 - MGP_C3HHeJ_P0032679 Cdc27 protein_coding protein_coding MGP_C3HHeJ_T0032680.1 MGP_C3HHeJ_G0019027.1 mouse_genomes_project 11 106499659 106518612 - Cdc27 protein_coding processed_transcript MGP_C3HHeJ_T0003267.1 MGP_C3HHeJ_G0003014.1 mouse_genomes_project 11 111654086 111655092 - Gm15642 antisense antisense MGP_C3HHeJ_T0033968.1 MGP_C3HHeJ_G0019290.1 mouse_genomes_project 11 124089268 124106146 + MGP_C3HHeJ_P0033968 Hexdc protein_coding protein_coding MGP_C3HHeJ_T0033969.1 MGP_C3HHeJ_G0019290.1 mouse_genomes_project 11 124089270 124106138 + MGP_C3HHeJ_P0033969 Hexdc protein_coding protein_coding MGP_C3HHeJ_T0033970.1 MGP_C3HHeJ_G0019290.1 mouse_genomes_project 11 124089610 124103380 + Hexdc protein_coding processed_transcript MGP_C3HHeJ_T0033971.1 MGP_C3HHeJ_G0019290.1 mouse_genomes_project 11 124089636 124098789 + Hexdc protein_coding processed_transcript MGP_C3HHeJ_T0033972.1 MGP_C3HHeJ_G0019290.1 mouse_genomes_project 11 124091422 124106138 + MGP_C3HHeJ_P0033972 Hexdc protein_coding protein_coding MGP_C3HHeJ_T0033973.1 MGP_C3HHeJ_G0019290.1 mouse_genomes_project 11 124095769 124104517 + MGP_C3HHeJ_P0033973 Hexdc protein_coding protein_coding MGP_C3HHeJ_T0028889.1 MGP_C3HHeJ_G0018069.1 mouse_genomes_project 11 53820202 53899449 - MGP_C3HHeJ_P0028889 Cdc42se2 protein_coding protein_coding MGP_C3HHeJ_T0028890.1 MGP_C3HHeJ_G0018069.1 mouse_genomes_project 11 53826320 53899420 - MGP_C3HHeJ_P0028890 Cdc42se2 protein_coding protein_coding MGP_C3HHeJ_T0028891.1 MGP_C3HHeJ_G0018069.1 mouse_genomes_project 11 53844600 53899415 - Cdc42se2 protein_coding processed_transcript MGP_C3HHeJ_T0028892.1 MGP_C3HHeJ_G0018069.1 mouse_genomes_project 11 53844924 53899399 - Cdc42se2 protein_coding processed_transcript MGP_C3HHeJ_T0028893.1 MGP_C3HHeJ_G0018069.1 mouse_genomes_project 11 53845059 53870068 - Cdc42se2 protein_coding processed_transcript MGP_C3HHeJ_T0033425.1 MGP_C3HHeJ_G0019180.1 mouse_genomes_project 11 119181022 119187300 - Ube2o protein_coding processed_transcript MGP_C3HHeJ_T0033426.1 MGP_C3HHeJ_G0019180.1 mouse_genomes_project 11 119181022 119225990 - MGP_C3HHeJ_P0033426 Ube2o protein_coding protein_coding MGP_C3HHeJ_T0033427.1 MGP_C3HHeJ_G0019180.1 mouse_genomes_project 11 119189080 119192180 - Ube2o protein_coding processed_transcript MGP_C3HHeJ_T0033433.1 MGP_C3HHeJ_G0019182.1 mouse_genomes_project 11 119243471 119270888 - MGP_C3HHeJ_P0033433 Rhbdf2 protein_coding protein_coding MGP_C3HHeJ_T0033434.1 MGP_C3HHeJ_G0019182.1 mouse_genomes_project 11 119243475 119273725 - MGP_C3HHeJ_P0033434 Rhbdf2 protein_coding protein_coding MGP_C3HHeJ_T0033435.1 MGP_C3HHeJ_G0019182.1 mouse_genomes_project 11 119246392 119247899 - Rhbdf2 protein_coding processed_transcript MGP_C3HHeJ_T0033436.1 MGP_C3HHeJ_G0019182.1 mouse_genomes_project 11 119248556 119270935 - Rhbdf2 protein_coding retained_intron MGP_C3HHeJ_T0029248.1 MGP_C3HHeJ_G0018184.1 mouse_genomes_project 11 60518571 60567515 + MGP_C3HHeJ_P0029248 Kcnj12 protein_coding protein_coding MGP_C3HHeJ_T0029249.1 MGP_C3HHeJ_G0018184.1 mouse_genomes_project 11 60562199 60567515 + MGP_C3HHeJ_P0029249 Kcnj12 protein_coding protein_coding MGP_C3HHeJ_T0029250.1 MGP_C3HHeJ_G0018184.1 mouse_genomes_project 11 60562199 60567511 + MGP_C3HHeJ_P0029250 Kcnj12 protein_coding protein_coding MGP_C3HHeJ_T0031628.1 MGP_C3HHeJ_G0018760.1 mouse_genomes_project 11 97645332 97648118 + Hoxb5 protein_coding retained_intron MGP_C3HHeJ_T0031629.1 MGP_C3HHeJ_G0018760.1 mouse_genomes_project 11 97645508 97648117 + MGP_C3HHeJ_P0031629 Hoxb5 protein_coding protein_coding MGP_C3HHeJ_T0100052.1 MGP_C3HHeJ_G0038246.1 mouse_genomes_project 11 108552892 108553025 + Gm22711 snoRNA snoRNA MGP_C3HHeJ_T0032544.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104730522 104779022 - MGP_C3HHeJ_P0032544 Eftud2 protein_coding protein_coding MGP_C3HHeJ_T0032545.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104730522 104779040 - MGP_C3HHeJ_P0032545 Eftud2 protein_coding protein_coding MGP_C3HHeJ_T0032546.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104730526 104736277 - MGP_C3HHeJ_P0032546 Eftud2 protein_coding protein_coding MGP_C3HHeJ_T0032547.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104730850 104775766 - MGP_C3HHeJ_P0032547 Eftud2 protein_coding protein_coding MGP_C3HHeJ_T0032548.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104730887 104733298 - MGP_C3HHeJ_P0032548 Eftud2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032549.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104731499 104732725 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032550.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104732260 104740036 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032551.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104741250 104753287 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032552.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104755674 104775742 - MGP_C3HHeJ_P0032552 Eftud2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032553.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104757884 104760015 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032554.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104759907 104779019 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032555.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104765107 104775767 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032556.1 MGP_C3HHeJ_G0018997.1 mouse_genomes_project 11 104775015 104778990 - Eftud2 protein_coding retained_intron MGP_C3HHeJ_T0032596.1 MGP_C3HHeJ_G0019008.1 mouse_genomes_project 11 105034916 105042857 + MGP_C3HHeJ_P0032596 Hexim2 protein_coding protein_coding MGP_C3HHeJ_T0032597.1 MGP_C3HHeJ_G0019008.1 mouse_genomes_project 11 105036395 105043550 + MGP_C3HHeJ_P0032597 Hexim2 protein_coding protein_coding MGP_C3HHeJ_T0032598.1 MGP_C3HHeJ_G0019008.1 mouse_genomes_project 11 105036420 105043005 + MGP_C3HHeJ_P0032598 Hexim2 protein_coding protein_coding MGP_C3HHeJ_T0032599.1 MGP_C3HHeJ_G0019008.1 mouse_genomes_project 11 105036426 105044235 + MGP_C3HHeJ_P0032599 Hexim2 protein_coding protein_coding MGP_C3HHeJ_T0032600.1 MGP_C3HHeJ_G0019008.1 mouse_genomes_project 11 105036946 105042638 + MGP_C3HHeJ_P0032600 Hexim2 protein_coding protein_coding MGP_C3HHeJ_T0012626.1 MGP_C3HHeJ_G0010730.1 mouse_genomes_project 11 106801427 106802496 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031528.1 MGP_C3HHeJ_G0018730.1 mouse_genomes_project 11 96299256 96314327 - MGP_C3HHeJ_P0031528 Pdk2 protein_coding protein_coding MGP_C3HHeJ_T0031529.1 MGP_C3HHeJ_G0018730.1 mouse_genomes_project 11 96299967 96301595 - Pdk2 protein_coding processed_transcript MGP_C3HHeJ_T0031530.1 MGP_C3HHeJ_G0018730.1 mouse_genomes_project 11 96301746 96302432 - Pdk2 protein_coding processed_transcript MGP_C3HHeJ_T0031531.1 MGP_C3HHeJ_G0018730.1 mouse_genomes_project 11 96302661 96313532 - Pdk2 protein_coding processed_transcript MGP_C3HHeJ_T0031532.1 MGP_C3HHeJ_G0018730.1 mouse_genomes_project 11 96304889 96313848 - Pdk2 protein_coding processed_transcript MGP_C3HHeJ_T0031068.1 MGP_C3HHeJ_G0018622.1 mouse_genomes_project 11 84775459 84794997 - MGP_C3HHeJ_P0031068 Gm11437 protein_coding protein_coding MGP_C3HHeJ_T0029138.1 MGP_C3HHeJ_G0018161.1 mouse_genomes_project 11 59209476 59252235 + Nt5m protein_coding processed_transcript MGP_C3HHeJ_T0029139.1 MGP_C3HHeJ_G0018161.1 mouse_genomes_project 11 59209476 59256661 + Nt5m protein_coding processed_transcript MGP_C3HHeJ_T0029140.1 MGP_C3HHeJ_G0018161.1 mouse_genomes_project 11 59221413 59252235 + MGP_C3HHeJ_P0029140 Nt5m protein_coding protein_coding MGP_C3HHeJ_T0029141.1 MGP_C3HHeJ_G0018161.1 mouse_genomes_project 11 59221444 59252235 + Nt5m protein_coding processed_transcript MGP_C3HHeJ_T0030914.1 MGP_C3HHeJ_G0018569.1 mouse_genomes_project 11 80933302 81235867 - MGP_C3HHeJ_P0030914 Myo1d protein_coding protein_coding MGP_C3HHeJ_T0030915.1 MGP_C3HHeJ_G0018569.1 mouse_genomes_project 11 81036337 81235867 - MGP_C3HHeJ_P0030915 Myo1d protein_coding protein_coding MGP_C3HHeJ_T0030916.1 MGP_C3HHeJ_G0018569.1 mouse_genomes_project 11 81127982 81235845 - Myo1d protein_coding retained_intron MGP_C3HHeJ_T0101646.1 MGP_C3HHeJ_G0039612.1 mouse_genomes_project 11 74389985 74390950 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0029456.1 MGP_C3HHeJ_G0018223.1 mouse_genomes_project 11 63585596 63704500 - MGP_C3HHeJ_P0029456 Cox10 protein_coding protein_coding MGP_C3HHeJ_T0029457.1 MGP_C3HHeJ_G0018223.1 mouse_genomes_project 11 63696424 63704502 - Cox10 protein_coding processed_transcript MGP_C3HHeJ_T0029195.1 MGP_C3HHeJ_G0018171.1 mouse_genomes_project 11 59864446 59871761 + Drg2 protein_coding retained_intron MGP_C3HHeJ_T0029196.1 MGP_C3HHeJ_G0018171.1 mouse_genomes_project 11 59864446 59878127 + MGP_C3HHeJ_P0029196 Drg2 protein_coding protein_coding MGP_C3HHeJ_T0029197.1 MGP_C3HHeJ_G0018171.1 mouse_genomes_project 11 59864479 59872555 + Drg2 protein_coding retained_intron MGP_C3HHeJ_T0029198.1 MGP_C3HHeJ_G0018171.1 mouse_genomes_project 11 59869275 59870243 + Drg2 protein_coding retained_intron MGP_C3HHeJ_T0029199.1 MGP_C3HHeJ_G0018171.1 mouse_genomes_project 11 59871414 59872949 + Drg2 protein_coding retained_intron MGP_C3HHeJ_T0012389.1 MGP_C3HHeJ_G0010493.1 mouse_genomes_project 11 15873889 15877300 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031779.1 MGP_C3HHeJ_G0018795.1 mouse_genomes_project 11 99204912 99210239 - MGP_C3HHeJ_P0031779 1700001P01Rik protein_coding protein_coding MGP_C3HHeJ_T0006168.1 MGP_C3HHeJ_G0005145.1 mouse_genomes_project 11 58180848 58182018 + Gm12259 lincRNA lincRNA MGP_C3HHeJ_T0032595.1 MGP_C3HHeJ_G0019007.1 mouse_genomes_project 11 105018856 105022078 + MGP_C3HHeJ_P0032595 Hexim1 protein_coding protein_coding MGP_C3HHeJ_T0006136.1 MGP_C3HHeJ_G0005115.1 mouse_genomes_project 11 30006171 30012129 - Gm12108 lincRNA lincRNA MGP_C3HHeJ_T0031351.1 MGP_C3HHeJ_G0018687.1 mouse_genomes_project 11 90235238 90236933 - MGP_C3HHeJ_P0031351 Nog protein_coding protein_coding MGP_C3HHeJ_T0033211.1 MGP_C3HHeJ_G0019144.1 mouse_genomes_project 11 118190150 118194259 + MGP_C3HHeJ_P0033211 Mrps7 protein_coding protein_coding MGP_C3HHeJ_T0033212.1 MGP_C3HHeJ_G0019144.1 mouse_genomes_project 11 118191092 118193227 + Mrps7 protein_coding processed_transcript MGP_C3HHeJ_T0028894.1 MGP_C3HHeJ_G0018070.1 mouse_genomes_project 11 53940754 53975017 - MGP_C3HHeJ_P0028894 Lyrm7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028895.1 MGP_C3HHeJ_G0018070.1 mouse_genomes_project 11 53952882 53974709 - MGP_C3HHeJ_P0028895 Lyrm7 protein_coding protein_coding MGP_C3HHeJ_T0028896.1 MGP_C3HHeJ_G0018070.1 mouse_genomes_project 11 53952883 53974689 - MGP_C3HHeJ_P0028896 Lyrm7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028897.1 MGP_C3HHeJ_G0018070.1 mouse_genomes_project 11 53954162 53965655 - Lyrm7 protein_coding retained_intron MGP_C3HHeJ_T0028898.1 MGP_C3HHeJ_G0018070.1 mouse_genomes_project 11 53954202 53974710 - Lyrm7 protein_coding processed_transcript MGP_C3HHeJ_T0028899.1 MGP_C3HHeJ_G0018070.1 mouse_genomes_project 11 53965342 53974686 - Lyrm7 protein_coding retained_intron MGP_C3HHeJ_T0032342.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103583237 103599875 - MGP_C3HHeJ_P0032342 Etv4 protein_coding protein_coding MGP_C3HHeJ_T0032343.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103583242 103599936 - MGP_C3HHeJ_P0032343 Etv4 protein_coding protein_coding MGP_C3HHeJ_T0032344.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103583242 103599936 - MGP_C3HHeJ_P0032344 Etv4 protein_coding protein_coding MGP_C3HHeJ_T0032345.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103583842 103585667 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032346.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103587177 103599426 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032347.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103587316 103599823 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032348.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103587566 103599787 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032349.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103587653 103599825 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032350.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103587653 103597849 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032351.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103587693 103599875 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032352.1 MGP_C3HHeJ_G0018963.1 mouse_genomes_project 11 103597715 103599413 - Etv4 protein_coding processed_transcript MGP_C3HHeJ_T0032000.1 MGP_C3HHeJ_G0018856.1 mouse_genomes_project 11 101141925 101142966 - MGP_C3HHeJ_P0032000 Krtap1-5 protein_coding protein_coding MGP_C3HHeJ_T0027788.1 MGP_C3HHeJ_G0017790.1 mouse_genomes_project 11 5933187 6080540 - MGP_C3HHeJ_P0027788 Pkd1l1 protein_coding protein_coding MGP_C3HHeJ_T0027789.1 MGP_C3HHeJ_G0017790.1 mouse_genomes_project 11 5933254 6056089 - MGP_C3HHeJ_P0027789 Pkd1l1 protein_coding protein_coding MGP_C3HHeJ_T0027790.1 MGP_C3HHeJ_G0017790.1 mouse_genomes_project 11 5950298 5965937 - Pkd1l1 protein_coding processed_transcript MGP_C3HHeJ_T0012366.1 MGP_C3HHeJ_G0010470.1 mouse_genomes_project 11 5199547 5201281 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012603.1 MGP_C3HHeJ_G0010707.1 mouse_genomes_project 11 98237797 98238604 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006098.1 MGP_C3HHeJ_G0005084.1 mouse_genomes_project 11 11866735 11905751 - 1700046C09Rik lincRNA lincRNA MGP_C3HHeJ_T0031991.1 MGP_C3HHeJ_G0018849.1 mouse_genomes_project 11 101032647 101047777 - MGP_C3HHeJ_P0031991 Krt23 protein_coding protein_coding MGP_C3HHeJ_T0033982.1 MGP_C3HHeJ_G0019292.1 mouse_genomes_project 11 124121422 124139968 + MGP_C3HHeJ_P0033982 Narf protein_coding protein_coding MGP_C3HHeJ_T0033983.1 MGP_C3HHeJ_G0019292.1 mouse_genomes_project 11 124128749 124129660 + Narf protein_coding retained_intron MGP_C3HHeJ_T0033984.1 MGP_C3HHeJ_G0019292.1 mouse_genomes_project 11 124129231 124130023 + Narf protein_coding retained_intron MGP_C3HHeJ_T0029090.1 MGP_C3HHeJ_G0018149.1 mouse_genomes_project 11 58714181 58717295 - MGP_C3HHeJ_P0029090 Prss38 protein_coding protein_coding MGP_C3HHeJ_T0030109.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70901666 70928281 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030110.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70901680 70928295 - MGP_C3HHeJ_P0030110 Nup88 protein_coding protein_coding MGP_C3HHeJ_T0030111.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70901685 70904969 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030112.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70901690 70928284 - MGP_C3HHeJ_P0030112 Nup88 protein_coding protein_coding MGP_C3HHeJ_T0030113.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70901710 70928276 - MGP_C3HHeJ_P0030113 Nup88 protein_coding protein_coding MGP_C3HHeJ_T0030114.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70901784 70928202 - MGP_C3HHeJ_P0030114 Nup88 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030115.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70902485 70903707 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030116.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70902544 70903095 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030117.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70902586 70903344 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030118.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70903019 70903641 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030119.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70903289 70907421 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030120.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70908170 70928283 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030121.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70913124 70915126 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030122.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70913822 70915577 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0030123.1 MGP_C3HHeJ_G0018371.1 mouse_genomes_project 11 70914863 70920426 - Nup88 protein_coding retained_intron MGP_C3HHeJ_T0028290.1 MGP_C3HHeJ_G0017909.1 mouse_genomes_project 11 33164550 33778855 + MGP_C3HHeJ_P0028290 Slit3 protein_coding protein_coding MGP_C3HHeJ_T0028291.1 MGP_C3HHeJ_G0017909.1 mouse_genomes_project 11 33216208 33286696 + Slit3 protein_coding processed_transcript MGP_C3HHeJ_T0028292.1 MGP_C3HHeJ_G0017909.1 mouse_genomes_project 11 33222362 33567306 + Slit3 protein_coding processed_transcript MGP_C3HHeJ_T0028293.1 MGP_C3HHeJ_G0017909.1 mouse_genomes_project 11 33601643 33671927 + Slit3 protein_coding processed_transcript MGP_C3HHeJ_T0030939.1 MGP_C3HHeJ_G0018582.1 mouse_genomes_project 11 83222141 83268803 - MGP_C3HHeJ_P0030939 Cct6b protein_coding protein_coding MGP_C3HHeJ_T0030940.1 MGP_C3HHeJ_G0018582.1 mouse_genomes_project 11 83222141 83268818 - MGP_C3HHeJ_P0030940 Cct6b protein_coding protein_coding MGP_C3HHeJ_T0032510.1 MGP_C3HHeJ_G0018989.1 mouse_genomes_project 11 104333480 104423345 - MGP_C3HHeJ_P0032510 Gpatch8 protein_coding protein_coding MGP_C3HHeJ_T0032511.1 MGP_C3HHeJ_G0018989.1 mouse_genomes_project 11 104334771 104368664 - Gpatch8 protein_coding processed_transcript MGP_C3HHeJ_T0032512.1 MGP_C3HHeJ_G0018989.1 mouse_genomes_project 11 104367710 104423345 - Gpatch8 protein_coding processed_transcript MGP_C3HHeJ_T0032513.1 MGP_C3HHeJ_G0018989.1 mouse_genomes_project 11 104368389 104423345 - Gpatch8 protein_coding processed_transcript MGP_C3HHeJ_T0032514.1 MGP_C3HHeJ_G0018989.1 mouse_genomes_project 11 104403431 104423322 - Gpatch8 protein_coding processed_transcript MGP_C3HHeJ_T0032515.1 MGP_C3HHeJ_G0018989.1 mouse_genomes_project 11 104404321 104423538 - Gpatch8 protein_coding processed_transcript MGP_C3HHeJ_T0033958.1 MGP_C3HHeJ_G0019285.1 mouse_genomes_project 11 123945352 123954783 - MGP_C3HHeJ_P0033958 Sectm1a protein_coding protein_coding MGP_C3HHeJ_T0033959.1 MGP_C3HHeJ_G0019285.1 mouse_genomes_project 11 123945352 123954702 - MGP_C3HHeJ_P0033959 Sectm1a protein_coding protein_coding MGP_C3HHeJ_T0033960.1 MGP_C3HHeJ_G0019285.1 mouse_genomes_project 11 123945862 123954699 - MGP_C3HHeJ_P0033960 Sectm1a protein_coding protein_coding MGP_C3HHeJ_T0033961.1 MGP_C3HHeJ_G0019285.1 mouse_genomes_project 11 123945880 123954693 - MGP_C3HHeJ_P0033961 Sectm1a protein_coding protein_coding MGP_C3HHeJ_T0033962.1 MGP_C3HHeJ_G0019285.1 mouse_genomes_project 11 123946981 123954688 - Sectm1a protein_coding processed_transcript MGP_C3HHeJ_T0012406.1 MGP_C3HHeJ_G0010510.1 mouse_genomes_project 11 18754639 18754940 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006142.1 MGP_C3HHeJ_G0005121.1 mouse_genomes_project 11 32915648 32917841 + Gm12711 lincRNA lincRNA MGP_C3HHeJ_T0098827.1 MGP_C3HHeJ_G0037021.1 mouse_genomes_project 11 118187881 118187988 + Gm25364 snRNA snRNA MGP_C3HHeJ_T0028182.1 MGP_C3HHeJ_G0017878.1 mouse_genomes_project 11 29774468 29835687 + MGP_C3HHeJ_P0028182 Cpeb4 protein_coding protein_coding MGP_C3HHeJ_T0028183.1 MGP_C3HHeJ_G0017878.1 mouse_genomes_project 11 29774483 29839751 + MGP_C3HHeJ_P0028183 Cpeb4 protein_coding protein_coding MGP_C3HHeJ_T0028184.1 MGP_C3HHeJ_G0017878.1 mouse_genomes_project 11 29775533 29839751 + MGP_C3HHeJ_P0028184 Cpeb4 protein_coding protein_coding MGP_C3HHeJ_T0029458.1 MGP_C3HHeJ_G0018224.1 mouse_genomes_project 11 64058710 64060208 - MGP_C3HHeJ_P0029458 F930015N05Rik protein_coding protein_coding MGP_C3HHeJ_T0032697.1 MGP_C3HHeJ_G0019032.1 mouse_genomes_project 11 107138169 107152151 + MGP_C3HHeJ_P0032697 Mettl2 protein_coding protein_coding MGP_C3HHeJ_T0032698.1 MGP_C3HHeJ_G0019032.1 mouse_genomes_project 11 107138223 107152151 + Mettl2 protein_coding processed_transcript MGP_C3HHeJ_T0032699.1 MGP_C3HHeJ_G0019032.1 mouse_genomes_project 11 107144192 107150742 + Mettl2 protein_coding processed_transcript MGP_C3HHeJ_T0032700.1 MGP_C3HHeJ_G0019032.1 mouse_genomes_project 11 107144203 107147400 + Mettl2 protein_coding processed_transcript MGP_C3HHeJ_T0032701.1 MGP_C3HHeJ_G0019032.1 mouse_genomes_project 11 107149306 107152151 + Mettl2 protein_coding processed_transcript MGP_C3HHeJ_T0029217.1 MGP_C3HHeJ_G0018177.1 mouse_genomes_project 11 60211887 60252957 - MGP_C3HHeJ_P0029217 Top3a protein_coding protein_coding MGP_C3HHeJ_T0029218.1 MGP_C3HHeJ_G0018177.1 mouse_genomes_project 11 60211888 60252879 - MGP_C3HHeJ_P0029218 Top3a protein_coding protein_coding MGP_C3HHeJ_T0029219.1 MGP_C3HHeJ_G0018177.1 mouse_genomes_project 11 60213721 60252857 - MGP_C3HHeJ_P0029219 Top3a protein_coding protein_coding MGP_C3HHeJ_T0029220.1 MGP_C3HHeJ_G0018177.1 mouse_genomes_project 11 60214062 60252856 - MGP_C3HHeJ_P0029220 Top3a protein_coding protein_coding MGP_C3HHeJ_T0029221.1 MGP_C3HHeJ_G0018177.1 mouse_genomes_project 11 60221293 60224513 - Top3a protein_coding retained_intron MGP_C3HHeJ_T0029222.1 MGP_C3HHeJ_G0018177.1 mouse_genomes_project 11 60236260 60252891 - MGP_C3HHeJ_P0029222 Top3a protein_coding protein_coding MGP_C3HHeJ_T0012466.1 MGP_C3HHeJ_G0010570.1 mouse_genomes_project 11 44491234 44491576 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031572.1 MGP_C3HHeJ_G0018741.1 mouse_genomes_project 11 96962513 96979360 + MGP_C3HHeJ_P0031572 Phb protein_coding protein_coding MGP_C3HHeJ_T0031573.1 MGP_C3HHeJ_G0018741.1 mouse_genomes_project 11 96962560 96967197 + Phb protein_coding processed_transcript MGP_C3HHeJ_T0031574.1 MGP_C3HHeJ_G0018741.1 mouse_genomes_project 11 96962570 96964171 + Phb protein_coding processed_transcript MGP_C3HHeJ_T0031575.1 MGP_C3HHeJ_G0018741.1 mouse_genomes_project 11 96962624 96978295 + MGP_C3HHeJ_P0031575 Phb protein_coding protein_coding MGP_C3HHeJ_T0031576.1 MGP_C3HHeJ_G0018741.1 mouse_genomes_project 11 96967004 96972467 + Phb protein_coding processed_transcript MGP_C3HHeJ_T0030858.1 MGP_C3HHeJ_G0018558.1 mouse_genomes_project 11 80461737 80495814 - MGP_C3HHeJ_P0030858 Crlf3 protein_coding protein_coding MGP_C3HHeJ_T0030859.1 MGP_C3HHeJ_G0018558.1 mouse_genomes_project 11 80462728 80495831 - MGP_C3HHeJ_P0030859 Crlf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030860.1 MGP_C3HHeJ_G0018558.1 mouse_genomes_project 11 80462728 80495814 - MGP_C3HHeJ_P0030860 Crlf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030861.1 MGP_C3HHeJ_G0018558.1 mouse_genomes_project 11 80471339 80495838 - Crlf3 protein_coding processed_transcript MGP_C3HHeJ_T0030862.1 MGP_C3HHeJ_G0018558.1 mouse_genomes_project 11 80471461 80473144 - Crlf3 protein_coding retained_intron MGP_C3HHeJ_T0030863.1 MGP_C3HHeJ_G0018558.1 mouse_genomes_project 11 80474556 80495763 - MGP_C3HHeJ_P0030863 Crlf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032005.1 MGP_C3HHeJ_G0018861.1 mouse_genomes_project 11 101184069 101184911 - MGP_C3HHeJ_P0032005 Krtap2-4 protein_coding protein_coding MGP_C3HHeJ_T0003138.1 MGP_C3HHeJ_G0002912.1 mouse_genomes_project 11 63635460 63638119 + Gm12289 antisense antisense MGP_C3HHeJ_T0029293.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005219 61010674 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029294.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005219 61010704 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029295.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005219 61010674 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029296.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005219 61010704 - MGP_C3HHeJ_P0029296 Mapk7 protein_coding protein_coding MGP_C3HHeJ_T0029297.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005219 61010674 - MGP_C3HHeJ_P0029297 Mapk7 protein_coding protein_coding MGP_C3HHeJ_T0029298.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005219 61010704 - MGP_C3HHeJ_P0029298 Mapk7 protein_coding protein_coding MGP_C3HHeJ_T0029299.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61005866 61007346 - MGP_C3HHeJ_P0029299 Mapk7 protein_coding protein_coding MGP_C3HHeJ_T0029300.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61007709 61010113 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029301.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61007963 61010674 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029302.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61007985 61010674 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029303.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61008003 61010814 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029304.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61008013 61010674 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029305.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61008013 61010596 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0029306.1 MGP_C3HHeJ_G0018193.1 mouse_genomes_project 11 61008049 61010596 - Mapk7 protein_coding processed_transcript MGP_C3HHeJ_T0032566.1 MGP_C3HHeJ_G0019003.1 mouse_genomes_project 11 104900787 104925083 - MGP_C3HHeJ_P0032566 Dcakd protein_coding protein_coding MGP_C3HHeJ_T0032567.1 MGP_C3HHeJ_G0019003.1 mouse_genomes_project 11 104900789 104904289 - Dcakd protein_coding retained_intron MGP_C3HHeJ_T0032568.1 MGP_C3HHeJ_G0019003.1 mouse_genomes_project 11 104906383 104937782 - MGP_C3HHeJ_P0032568 Dcakd protein_coding protein_coding MGP_C3HHeJ_T0032569.1 MGP_C3HHeJ_G0019003.1 mouse_genomes_project 11 104936465 104937741 - Dcakd protein_coding retained_intron MGP_C3HHeJ_T0032570.1 MGP_C3HHeJ_G0019003.1 mouse_genomes_project 11 104936739 104937811 - Dcakd protein_coding processed_transcript MGP_C3HHeJ_T0098753.1 MGP_C3HHeJ_G0036947.1 mouse_genomes_project 11 2218047 2218154 + Gm25142 snRNA snRNA MGP_C3HHeJ_T0032267.1 MGP_C3HHeJ_G0018945.1 mouse_genomes_project 11 103060495 103064289 + MGP_C3HHeJ_P0032267 Psme3 protein_coding protein_coding MGP_C3HHeJ_T0032268.1 MGP_C3HHeJ_G0018945.1 mouse_genomes_project 11 103060495 103067823 + MGP_C3HHeJ_P0032268 Psme3 protein_coding protein_coding MGP_C3HHeJ_T0032269.1 MGP_C3HHeJ_G0018945.1 mouse_genomes_project 11 103061259 103064875 + MGP_C3HHeJ_P0032269 Psme3 protein_coding protein_coding MGP_C3HHeJ_T0032270.1 MGP_C3HHeJ_G0018945.1 mouse_genomes_project 11 103061305 103064305 + Psme3 protein_coding processed_transcript MGP_C3HHeJ_T0032271.1 MGP_C3HHeJ_G0018945.1 mouse_genomes_project 11 103064114 103066378 + Psme3 protein_coding processed_transcript MGP_C3HHeJ_T0030924.1 MGP_C3HHeJ_G0018574.1 mouse_genomes_project 11 82515250 82525588 - MGP_C3HHeJ_P0030924 Gm17268 protein_coding protein_coding MGP_C3HHeJ_T0012420.1 MGP_C3HHeJ_G0010524.1 mouse_genomes_project 11 24495939 24496463 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032029.1 MGP_C3HHeJ_G0018885.1 mouse_genomes_project 11 101652180 101657016 - MGP_C3HHeJ_P0032029 Krt33a protein_coding protein_coding MGP_C3HHeJ_T0012665.1 MGP_C3HHeJ_G0010769.1 mouse_genomes_project 11 124306607 124306942 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031921.1 MGP_C3HHeJ_G0018827.1 mouse_genomes_project 11 100276378 100283788 - MGP_C3HHeJ_P0031921 Nr1d1 protein_coding protein_coding MGP_C3HHeJ_T0031922.1 MGP_C3HHeJ_G0018827.1 mouse_genomes_project 11 100277803 100278883 - Nr1d1 protein_coding processed_transcript MGP_C3HHeJ_T0029676.1 MGP_C3HHeJ_G0018276.1 mouse_genomes_project 11 68998260 69012836 - MGP_C3HHeJ_P0029676 Alox8 protein_coding protein_coding MGP_C3HHeJ_T0029677.1 MGP_C3HHeJ_G0018276.1 mouse_genomes_project 11 68999418 69012802 - MGP_C3HHeJ_P0029677 Alox8 protein_coding protein_coding MGP_C3HHeJ_T0029678.1 MGP_C3HHeJ_G0018276.1 mouse_genomes_project 11 69004868 69012804 - Alox8 protein_coding retained_intron MGP_C3HHeJ_T0029679.1 MGP_C3HHeJ_G0018276.1 mouse_genomes_project 11 69006533 69012377 - Alox8 protein_coding retained_intron MGP_C3HHeJ_T0028240.1 MGP_C3HHeJ_G0017893.1 mouse_genomes_project 11 30589428 30699104 + MGP_C3HHeJ_P0028240 Fbxw11 protein_coding protein_coding MGP_C3HHeJ_T0028241.1 MGP_C3HHeJ_G0017893.1 mouse_genomes_project 11 30589488 30599243 + Fbxw11 protein_coding processed_transcript MGP_C3HHeJ_T0028242.1 MGP_C3HHeJ_G0017893.1 mouse_genomes_project 11 30589570 30699324 + MGP_C3HHeJ_P0028242 Fbxw11 protein_coding protein_coding MGP_C3HHeJ_T0028243.1 MGP_C3HHeJ_G0017893.1 mouse_genomes_project 11 30589579 30699351 + MGP_C3HHeJ_P0028243 Fbxw11 protein_coding protein_coding MGP_C3HHeJ_T0028244.1 MGP_C3HHeJ_G0017893.1 mouse_genomes_project 11 30589608 30669774 + MGP_C3HHeJ_P0028244 Fbxw11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033522.1 MGP_C3HHeJ_G0019199.1 mouse_genomes_project 11 120480555 120482630 + MGP_C3HHeJ_P0033522 Tmc8 protein_coding protein_coding MGP_C3HHeJ_T0033523.1 MGP_C3HHeJ_G0019199.1 mouse_genomes_project 11 120480776 120491539 + MGP_C3HHeJ_P0033523 Tmc8 protein_coding protein_coding MGP_C3HHeJ_T0033524.1 MGP_C3HHeJ_G0019199.1 mouse_genomes_project 11 120480794 120491621 + MGP_C3HHeJ_P0033524 Tmc8 protein_coding protein_coding MGP_C3HHeJ_T0033525.1 MGP_C3HHeJ_G0019199.1 mouse_genomes_project 11 120480864 120491375 + MGP_C3HHeJ_P0033525 Tmc8 protein_coding protein_coding MGP_C3HHeJ_T0033526.1 MGP_C3HHeJ_G0019199.1 mouse_genomes_project 11 120481137 120491594 + MGP_C3HHeJ_P0033526 Tmc8 protein_coding protein_coding MGP_C3HHeJ_T0033527.1 MGP_C3HHeJ_G0019199.1 mouse_genomes_project 11 120489679 120491105 + Tmc8 protein_coding retained_intron MGP_C3HHeJ_T0033289.1 MGP_C3HHeJ_G0019156.1 mouse_genomes_project 11 118538089 118573513 + MGP_C3HHeJ_P0033289 Sap30bp protein_coding protein_coding MGP_C3HHeJ_T0033290.1 MGP_C3HHeJ_G0019156.1 mouse_genomes_project 11 118538380 118562170 + Sap30bp protein_coding processed_transcript MGP_C3HHeJ_T0033291.1 MGP_C3HHeJ_G0019156.1 mouse_genomes_project 11 118538444 118543215 + Sap30bp protein_coding processed_transcript MGP_C3HHeJ_T0033292.1 MGP_C3HHeJ_G0019156.1 mouse_genomes_project 11 118538481 118572323 + Sap30bp protein_coding processed_transcript MGP_C3HHeJ_T0033293.1 MGP_C3HHeJ_G0019156.1 mouse_genomes_project 11 118538483 118570651 + MGP_C3HHeJ_P0033293 Sap30bp protein_coding unknown_likely_coding MGP_C3HHeJ_T0028987.1 MGP_C3HHeJ_G0018099.1 mouse_genomes_project 11 57534621 57556779 + MGP_C3HHeJ_P0028987 protein_coding protein_coding MGP_C3HHeJ_T0031210.1 MGP_C3HHeJ_G0018652.1 mouse_genomes_project 11 87816680 87825911 - MGP_C3HHeJ_P0031210 Smg8 protein_coding protein_coding MGP_C3HHeJ_T0031211.1 MGP_C3HHeJ_G0018652.1 mouse_genomes_project 11 87816684 87824519 - MGP_C3HHeJ_P0031211 Smg8 protein_coding protein_coding MGP_C3HHeJ_T0029563.1 MGP_C3HHeJ_G0018253.1 mouse_genomes_project 11 68204100 68269716 + MGP_C3HHeJ_P0029563 Pik3r5 protein_coding protein_coding MGP_C3HHeJ_T0029564.1 MGP_C3HHeJ_G0018253.1 mouse_genomes_project 11 68204104 68248569 + Pik3r5 protein_coding processed_transcript MGP_C3HHeJ_T0029565.1 MGP_C3HHeJ_G0018253.1 mouse_genomes_project 11 68204139 68212353 + Pik3r5 protein_coding processed_transcript MGP_C3HHeJ_T0029566.1 MGP_C3HHeJ_G0018253.1 mouse_genomes_project 11 68245599 68268048 + Pik3r5 protein_coding processed_transcript MGP_C3HHeJ_T0029567.1 MGP_C3HHeJ_G0018253.1 mouse_genomes_project 11 68247285 68265129 + Pik3r5 protein_coding processed_transcript MGP_C3HHeJ_T0033566.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120868498 120987665 - MGP_C3HHeJ_P0033566 Cyth1 protein_coding protein_coding MGP_C3HHeJ_T0033567.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120902248 120950678 - MGP_C3HHeJ_P0033567 Cyth1 protein_coding protein_coding MGP_C3HHeJ_T0033568.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120902248 120987755 - MGP_C3HHeJ_P0033568 Cyth1 protein_coding protein_coding MGP_C3HHeJ_T0033569.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120902257 120987723 - MGP_C3HHeJ_P0033569 Cyth1 protein_coding protein_coding MGP_C3HHeJ_T0033570.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120923054 120964917 - Cyth1 protein_coding processed_transcript MGP_C3HHeJ_T0033571.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120923509 120956961 - Cyth1 protein_coding processed_transcript MGP_C3HHeJ_T0033572.1 MGP_C3HHeJ_G0019211.1 mouse_genomes_project 11 120923528 120950678 - MGP_C3HHeJ_P0033572 Cyth1 protein_coding protein_coding MGP_C3HHeJ_T0032601.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105081408 105109159 + MGP_C3HHeJ_P0032601 Fmnl1 protein_coding protein_coding MGP_C3HHeJ_T0032602.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105081614 105109153 + MGP_C3HHeJ_P0032602 Fmnl1 protein_coding protein_coding MGP_C3HHeJ_T0032603.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105081614 105109166 + MGP_C3HHeJ_P0032603 Fmnl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032604.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105091048 105100666 + Fmnl1 protein_coding processed_transcript MGP_C3HHeJ_T0032605.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105095541 105100956 + Fmnl1 protein_coding processed_transcript MGP_C3HHeJ_T0032606.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105102607 105109153 + Fmnl1 protein_coding retained_intron MGP_C3HHeJ_T0032607.1 MGP_C3HHeJ_G0019009.1 mouse_genomes_project 11 105107096 105108172 + MGP_C3HHeJ_P0032607 Fmnl1 protein_coding protein_coding MGP_C3HHeJ_T0011222.1 MGP_C3HHeJ_G0009355.1 mouse_genomes_project 11 109980945 109981232 + Gm23120 misc_RNA misc_RNA MGP_C3HHeJ_T0028923.1 MGP_C3HHeJ_G0018077.1 mouse_genomes_project 11 54258886 54285378 - MGP_C3HHeJ_P0028923 Slc36a3 protein_coding protein_coding MGP_C3HHeJ_T0028924.1 MGP_C3HHeJ_G0018077.1 mouse_genomes_project 11 54258896 54285356 - MGP_C3HHeJ_P0028924 Slc36a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028925.1 MGP_C3HHeJ_G0018077.1 mouse_genomes_project 11 54283160 54285378 - MGP_C3HHeJ_P0028925 Slc36a3 protein_coding protein_coding MGP_C3HHeJ_T0098343.1 MGP_C3HHeJ_G0036554.1 mouse_genomes_project 11 219846 221185 - Gm11948 sense_intronic sense_intronic MGP_C3HHeJ_T0030155.1 MGP_C3HHeJ_G0018376.1 mouse_genomes_project 11 70988266 70993832 + MGP_C3HHeJ_P0030155 Mis12 protein_coding protein_coding MGP_C3HHeJ_T0030156.1 MGP_C3HHeJ_G0018376.1 mouse_genomes_project 11 70988266 70996025 + MGP_C3HHeJ_P0030156 Mis12 protein_coding protein_coding MGP_C3HHeJ_T0030157.1 MGP_C3HHeJ_G0018376.1 mouse_genomes_project 11 70988266 70994720 + MGP_C3HHeJ_P0030157 Mis12 protein_coding protein_coding MGP_C3HHeJ_T0030158.1 MGP_C3HHeJ_G0018376.1 mouse_genomes_project 11 70988514 70993821 + MGP_C3HHeJ_P0030158 Mis12 protein_coding protein_coding MGP_C3HHeJ_T0030159.1 MGP_C3HHeJ_G0018376.1 mouse_genomes_project 11 70988517 70993812 + MGP_C3HHeJ_P0030159 Mis12 protein_coding protein_coding MGP_C3HHeJ_T0030160.1 MGP_C3HHeJ_G0018376.1 mouse_genomes_project 11 70988546 70993849 + MGP_C3HHeJ_P0030160 Mis12 protein_coding protein_coding MGP_C3HHeJ_T0027694.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2965891 3057236 - MGP_C3HHeJ_P0027694 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027695.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2965916 2980373 - Camk2b protein_coding processed_transcript MGP_C3HHeJ_T0027696.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2965920 3057236 - MGP_C3HHeJ_P0027696 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027697.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2965920 3057051 - MGP_C3HHeJ_P0027697 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027698.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2967802 3057051 - MGP_C3HHeJ_P0027698 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027699.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2967903 3057070 - MGP_C3HHeJ_P0027699 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027700.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2967906 3057033 - MGP_C3HHeJ_P0027700 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027701.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2967906 3057230 - MGP_C3HHeJ_P0027701 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027702.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2967914 3057100 - MGP_C3HHeJ_P0027702 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027703.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2967969 3057026 - MGP_C3HHeJ_P0027703 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027704.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2968451 3057058 - MGP_C3HHeJ_P0027704 Camk2b protein_coding protein_coding MGP_C3HHeJ_T0027705.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2984335 3057026 - Camk2b protein_coding processed_transcript MGP_C3HHeJ_T0027706.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2986629 2996693 - Camk2b protein_coding processed_transcript MGP_C3HHeJ_T0027707.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 2989054 3058931 - Camk2b protein_coding processed_transcript MGP_C3HHeJ_T0027708.1 MGP_C3HHeJ_G0017768.1 mouse_genomes_project 11 3002103 3057146 - Camk2b protein_coding processed_transcript MGP_C3HHeJ_T0029574.1 MGP_C3HHeJ_G0018256.1 mouse_genomes_project 11 68366605 68378260 + MGP_C3HHeJ_P0029574 Ccdc42 protein_coding protein_coding MGP_C3HHeJ_T0029575.1 MGP_C3HHeJ_G0018256.1 mouse_genomes_project 11 68366717 68378239 + MGP_C3HHeJ_P0029575 Ccdc42 protein_coding protein_coding MGP_C3HHeJ_T0029576.1 MGP_C3HHeJ_G0018256.1 mouse_genomes_project 11 68373615 68378248 + MGP_C3HHeJ_P0029576 Ccdc42 protein_coding protein_coding MGP_C3HHeJ_T0033776.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123300416 123303158 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033777.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123300874 123302825 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033778.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123300988 123303151 - MGP_C3HHeJ_P0033778 Arl16 protein_coding protein_coding MGP_C3HHeJ_T0033779.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301141 123303016 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033780.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301148 123302885 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033781.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301163 123302971 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033782.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301304 123303032 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033783.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301318 123302972 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033784.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301320 123302947 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033785.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123301465 123302984 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0033786.1 MGP_C3HHeJ_G0019252.1 mouse_genomes_project 11 123302455 123303004 - Arl16 protein_coding processed_transcript MGP_C3HHeJ_T0031011.1 MGP_C3HHeJ_G0018603.1 mouse_genomes_project 11 84035881 84058127 - MGP_C3HHeJ_P0031011 Mmp28 protein_coding protein_coding MGP_C3HHeJ_T0031012.1 MGP_C3HHeJ_G0018603.1 mouse_genomes_project 11 84036987 84058066 - MGP_C3HHeJ_P0031012 Mmp28 protein_coding protein_coding MGP_C3HHeJ_T0031013.1 MGP_C3HHeJ_G0018603.1 mouse_genomes_project 11 84036987 84058176 - MGP_C3HHeJ_P0031013 Mmp28 protein_coding protein_coding MGP_C3HHeJ_T0031014.1 MGP_C3HHeJ_G0018603.1 mouse_genomes_project 11 84038175 84058097 - MGP_C3HHeJ_P0031014 Mmp28 protein_coding protein_coding MGP_C3HHeJ_T0031015.1 MGP_C3HHeJ_G0018603.1 mouse_genomes_project 11 84046473 84058176 - Mmp28 protein_coding processed_transcript MGP_C3HHeJ_T0032284.1 MGP_C3HHeJ_G0018951.1 mouse_genomes_project 11 103172405 103178921 - MGP_C3HHeJ_P0032284 Ptges3l protein_coding protein_coding MGP_C3HHeJ_T0032285.1 MGP_C3HHeJ_G0018951.1 mouse_genomes_project 11 103172405 103178257 - MGP_C3HHeJ_P0032285 Ptges3l protein_coding protein_coding MGP_C3HHeJ_T0032286.1 MGP_C3HHeJ_G0018951.1 mouse_genomes_project 11 103174464 103178257 - MGP_C3HHeJ_P0032286 Ptges3l protein_coding protein_coding MGP_C3HHeJ_T0032287.1 MGP_C3HHeJ_G0018951.1 mouse_genomes_project 11 103175011 103177444 - MGP_C3HHeJ_P0032287 Ptges3l protein_coding protein_coding MGP_C3HHeJ_T0032288.1 MGP_C3HHeJ_G0018951.1 mouse_genomes_project 11 103175419 103177820 - Ptges3l protein_coding retained_intron MGP_C3HHeJ_T0030692.1 MGP_C3HHeJ_G0018517.1 mouse_genomes_project 11 78462668 78469759 - Traf4 protein_coding retained_intron MGP_C3HHeJ_T0030693.1 MGP_C3HHeJ_G0018517.1 mouse_genomes_project 11 78463569 78469759 - MGP_C3HHeJ_P0030693 Traf4 protein_coding protein_coding MGP_C3HHeJ_T0030694.1 MGP_C3HHeJ_G0018517.1 mouse_genomes_project 11 78464962 78469686 - Traf4 protein_coding retained_intron MGP_C3HHeJ_T0033805.1 MGP_C3HHeJ_G0019257.1 mouse_genomes_project 11 123383458 123389921 - Fam195b protein_coding processed_transcript MGP_C3HHeJ_T0033806.1 MGP_C3HHeJ_G0019257.1 mouse_genomes_project 11 123383458 123389947 - MGP_C3HHeJ_P0033806 Fam195b protein_coding protein_coding MGP_C3HHeJ_T0032241.1 MGP_C3HHeJ_G0018941.1 mouse_genomes_project 11 102998794 103019455 + MGP_C3HHeJ_P0032241 Wnk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032242.1 MGP_C3HHeJ_G0018941.1 mouse_genomes_project 11 102998825 103019455 + MGP_C3HHeJ_P0032242 Wnk4 protein_coding protein_coding MGP_C3HHeJ_T0032243.1 MGP_C3HHeJ_G0018941.1 mouse_genomes_project 11 102998882 103019320 + MGP_C3HHeJ_P0032243 Wnk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032244.1 MGP_C3HHeJ_G0018941.1 mouse_genomes_project 11 103006096 103016280 + MGP_C3HHeJ_P0032244 Wnk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032245.1 MGP_C3HHeJ_G0018941.1 mouse_genomes_project 11 103018691 103019452 + MGP_C3HHeJ_P0032245 Wnk4 protein_coding protein_coding MGP_C3HHeJ_T0031988.1 MGP_C3HHeJ_G0018846.1 mouse_genomes_project 11 100937691 100941814 - MGP_C3HHeJ_P0031988 Krt10 protein_coding protein_coding MGP_C3HHeJ_T0033459.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466461 119472320 - Jmjd6 protein_coding retained_intron MGP_C3HHeJ_T0033460.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466461 119472488 - MGP_C3HHeJ_P0033460 Jmjd6 protein_coding protein_coding MGP_C3HHeJ_T0033461.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466462 119472329 - Jmjd6 protein_coding retained_intron MGP_C3HHeJ_T0033462.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466462 119472394 - MGP_C3HHeJ_P0033462 Jmjd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033463.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466464 119470275 - MGP_C3HHeJ_P0033463 Jmjd6 protein_coding protein_coding MGP_C3HHeJ_T0033464.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466617 119471744 - MGP_C3HHeJ_P0033464 Jmjd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033465.1 MGP_C3HHeJ_G0019189.1 mouse_genomes_project 11 119466642 119471759 - MGP_C3HHeJ_P0033465 Jmjd6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012346.1 MGP_C3HHeJ_G0010450.1 mouse_genomes_project 11 510449 510929 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031579.1 MGP_C3HHeJ_G0018743.1 mouse_genomes_project 11 97028245 97031372 + MGP_C3HHeJ_P0031579 B130006D01Rik protein_coding protein_coding MGP_C3HHeJ_T0032353.1 MGP_C3HHeJ_G0018964.1 mouse_genomes_project 11 103702758 103720830 - MGP_C3HHeJ_P0032353 Meox1 protein_coding protein_coding MGP_C3HHeJ_T0012636.1 MGP_C3HHeJ_G0010740.1 mouse_genomes_project 11 109447932 109448283 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006298.1 MGP_C3HHeJ_G0005240.1 mouse_genomes_project 11 121553078 121555534 + Gm11750 lincRNA lincRNA MGP_C3HHeJ_T0028486.1 MGP_C3HHeJ_G0017963.1 mouse_genomes_project 11 47478835 47507495 - MGP_C3HHeJ_P0028486 Gm12185 protein_coding protein_coding MGP_C3HHeJ_T0028488.1 MGP_C3HHeJ_G0017963.1 mouse_genomes_project 11 47491142 47507515 - Gm12185 protein_coding processed_transcript MGP_C3HHeJ_T0006189.1 MGP_C3HHeJ_G0005162.1 mouse_genomes_project 11 70585203 70586912 - Gm12319 lincRNA lincRNA MGP_C3HHeJ_T0012478.1 MGP_C3HHeJ_G0010582.1 mouse_genomes_project 11 49141942 49142204 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101351.1 MGP_C3HHeJ_G0039422.1 mouse_genomes_project 11 74345324 74357568 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101352.1 MGP_C3HHeJ_G0039422.1 mouse_genomes_project 11 74345799 74347253 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0032277.1 MGP_C3HHeJ_G0018949.1 mouse_genomes_project 11 103159849 103178107 - MGP_C3HHeJ_P0032277 Gm27029 protein_coding protein_coding MGP_C3HHeJ_T0032279.1 MGP_C3HHeJ_G0018949.1 mouse_genomes_project 11 103160024 103178384 - MGP_C3HHeJ_P0032279 Gm27029 protein_coding protein_coding MGP_C3HHeJ_T0031884.1 MGP_C3HHeJ_G0018820.1 mouse_genomes_project 11 100116234 100129615 + MGP_C3HHeJ_P0031884 Gsdma3 protein_coding protein_coding MGP_C3HHeJ_T0031885.1 MGP_C3HHeJ_G0018820.1 mouse_genomes_project 11 100116234 100129478 + MGP_C3HHeJ_P0031885 Gsdma3 protein_coding protein_coding MGP_C3HHeJ_T0006202.1 MGP_C3HHeJ_G0005172.1 mouse_genomes_project 11 75567898 75568510 - Gm12336 lincRNA lincRNA MGP_C3HHeJ_T0030400.1 MGP_C3HHeJ_G0018456.1 mouse_genomes_project 11 75048600 75305026 + MGP_C3HHeJ_P0030400 Smg6 protein_coding protein_coding MGP_C3HHeJ_T0030401.1 MGP_C3HHeJ_G0018456.1 mouse_genomes_project 11 75053304 75305026 + MGP_C3HHeJ_P0030401 Smg6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030402.1 MGP_C3HHeJ_G0018456.1 mouse_genomes_project 11 75116766 75119612 + Smg6 protein_coding retained_intron MGP_C3HHeJ_T0030403.1 MGP_C3HHeJ_G0018456.1 mouse_genomes_project 11 75121258 75277205 + MGP_C3HHeJ_P0030403 Smg6 protein_coding protein_coding MGP_C3HHeJ_T0030404.1 MGP_C3HHeJ_G0018456.1 mouse_genomes_project 11 75270270 75277205 + Smg6 protein_coding processed_transcript MGP_C3HHeJ_T0030405.1 MGP_C3HHeJ_G0018456.1 mouse_genomes_project 11 75300220 75303759 + Smg6 protein_coding processed_transcript MGP_C3HHeJ_T0032026.1 MGP_C3HHeJ_G0018882.1 mouse_genomes_project 11 101618993 101620022 - MGP_C3HHeJ_P0032026 Krtap29-1 protein_coding protein_coding MGP_C3HHeJ_T0028538.1 MGP_C3HHeJ_G0017978.1 mouse_genomes_project 11 48039711 48040647 + MGP_C3HHeJ_P0028538 Olfr1390 protein_coding protein_coding MGP_C3HHeJ_T0031626.1 MGP_C3HHeJ_G0018759.1 mouse_genomes_project 11 97634874 97643566 + MGP_C3HHeJ_P0031626 Hoxb6 protein_coding protein_coding MGP_C3HHeJ_T0031627.1 MGP_C3HHeJ_G0018759.1 mouse_genomes_project 11 97641476 97643565 + MGP_C3HHeJ_P0031627 Hoxb6 protein_coding protein_coding MGP_C3HHeJ_T0028231.1 MGP_C3HHeJ_G0017888.1 mouse_genomes_project 11 30215486 30227008 + MGP_C3HHeJ_P0028231 protein_coding protein_coding MGP_C3HHeJ_T0016929.1 MGP_C3HHeJ_G0014911.1 mouse_genomes_project 11 3554589 3557532 - Snhg15 processed_transcript processed_transcript MGP_C3HHeJ_T0016930.1 MGP_C3HHeJ_G0014911.1 mouse_genomes_project 11 3554590 3555729 - Snhg15 processed_transcript processed_transcript MGP_C3HHeJ_T0016931.1 MGP_C3HHeJ_G0014911.1 mouse_genomes_project 11 3554623 3557213 - Snhg15 processed_transcript processed_transcript MGP_C3HHeJ_T0016932.1 MGP_C3HHeJ_G0014911.1 mouse_genomes_project 11 3556670 3557518 - Snhg15 processed_transcript processed_transcript MGP_C3HHeJ_T0006257.1 MGP_C3HHeJ_G0005209.1 mouse_genomes_project 11 101752022 101758350 - Gm12347 lincRNA lincRNA MGP_C3HHeJ_T0033041.1 MGP_C3HHeJ_G0019107.1 mouse_genomes_project 11 117141129 117145616 + MGP_C3HHeJ_P0033041 Rpl38 protein_coding protein_coding MGP_C3HHeJ_T0033042.1 MGP_C3HHeJ_G0019107.1 mouse_genomes_project 11 117141153 117145616 + MGP_C3HHeJ_P0033042 Rpl38 protein_coding protein_coding MGP_C3HHeJ_T0033043.1 MGP_C3HHeJ_G0019107.1 mouse_genomes_project 11 117141214 117145616 + MGP_C3HHeJ_P0033043 Rpl38 protein_coding protein_coding MGP_C3HHeJ_T0033044.1 MGP_C3HHeJ_G0019107.1 mouse_genomes_project 11 117141231 117145616 + MGP_C3HHeJ_P0033044 Rpl38 protein_coding protein_coding MGP_C3HHeJ_T0012424.1 MGP_C3HHeJ_G0010528.1 mouse_genomes_project 11 25170071 25170547 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027573.1 MGP_C3HHeJ_G0017742.1 mouse_genomes_project 11 1653626 1663513 - MGP_C3HHeJ_P0027573 Cabp7 protein_coding protein_coding MGP_C3HHeJ_T0000311.1 MGP_C3HHeJ_G0000261.1 mouse_genomes_project 11 42811126 42811179 - mt-Tk Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0098818.1 MGP_C3HHeJ_G0037012.1 mouse_genomes_project 11 103375169 103375360 + Gm26316 snRNA snRNA MGP_C3HHeJ_T0100035.1 MGP_C3HHeJ_G0038229.1 mouse_genomes_project 11 78488038 78488107 - Snord42b snoRNA snoRNA MGP_C3HHeJ_T0012511.1 MGP_C3HHeJ_G0010615.1 mouse_genomes_project 11 60163357 60163855 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033438.1 MGP_C3HHeJ_G0019184.1 mouse_genomes_project 11 119304673 119322791 + MGP_C3HHeJ_P0033438 protein_coding protein_coding MGP_C3HHeJ_T0033439.1 MGP_C3HHeJ_G0019184.1 mouse_genomes_project 11 119304673 119322496 + MGP_C3HHeJ_P0033439 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033440.1 MGP_C3HHeJ_G0019184.1 mouse_genomes_project 11 119304994 119322793 + MGP_C3HHeJ_P0033440 protein_coding protein_coding MGP_C3HHeJ_T0033441.1 MGP_C3HHeJ_G0019184.1 mouse_genomes_project 11 119309368 119322791 + MGP_C3HHeJ_P0033441 protein_coding protein_coding MGP_C3HHeJ_T0033442.1 MGP_C3HHeJ_G0019184.1 mouse_genomes_project 11 119309416 119312403 + protein_coding retained_intron MGP_C3HHeJ_T0030433.1 MGP_C3HHeJ_G0018464.1 mouse_genomes_project 11 75577328 75590143 - MGP_C3HHeJ_P0030433 Serpinf2 protein_coding protein_coding MGP_C3HHeJ_T0030434.1 MGP_C3HHeJ_G0018464.1 mouse_genomes_project 11 75577332 75590744 - MGP_C3HHeJ_P0030434 Serpinf2 protein_coding protein_coding MGP_C3HHeJ_T0030435.1 MGP_C3HHeJ_G0018464.1 mouse_genomes_project 11 75587189 75590834 - MGP_C3HHeJ_P0030435 Serpinf2 protein_coding protein_coding MGP_C3HHeJ_T0030436.1 MGP_C3HHeJ_G0018464.1 mouse_genomes_project 11 75587708 75590821 - MGP_C3HHeJ_P0030436 Serpinf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031016.1 MGP_C3HHeJ_G0018604.1 mouse_genomes_project 11 84068393 84086014 + Taf15 protein_coding processed_transcript MGP_C3HHeJ_T0031017.1 MGP_C3HHeJ_G0018604.1 mouse_genomes_project 11 84068399 84103387 + MGP_C3HHeJ_P0031017 Taf15 protein_coding protein_coding MGP_C3HHeJ_T0031018.1 MGP_C3HHeJ_G0018604.1 mouse_genomes_project 11 84068418 84078770 + Taf15 protein_coding retained_intron MGP_C3HHeJ_T0031019.1 MGP_C3HHeJ_G0018604.1 mouse_genomes_project 11 84068422 84085846 + Taf15 protein_coding processed_transcript MGP_C3HHeJ_T0031020.1 MGP_C3HHeJ_G0018604.1 mouse_genomes_project 11 84085827 84103385 + MGP_C3HHeJ_P0031020 Taf15 protein_coding protein_coding MGP_C3HHeJ_T0031877.1 MGP_C3HHeJ_G0018818.1 mouse_genomes_project 11 100038424 100045992 + MGP_C3HHeJ_P0031877 Zpbp2 protein_coding protein_coding MGP_C3HHeJ_T0031878.1 MGP_C3HHeJ_G0018818.1 mouse_genomes_project 11 100038457 100045992 + MGP_C3HHeJ_P0031878 Zpbp2 protein_coding protein_coding MGP_C3HHeJ_T0031879.1 MGP_C3HHeJ_G0018818.1 mouse_genomes_project 11 100038477 100045983 + MGP_C3HHeJ_P0031879 Zpbp2 protein_coding protein_coding MGP_C3HHeJ_T0031880.1 MGP_C3HHeJ_G0018818.1 mouse_genomes_project 11 100038479 100045983 + MGP_C3HHeJ_P0031880 Zpbp2 protein_coding protein_coding MGP_C3HHeJ_T0031881.1 MGP_C3HHeJ_G0018818.1 mouse_genomes_project 11 100038505 100045860 + MGP_C3HHeJ_P0031881 Zpbp2 protein_coding protein_coding MGP_C3HHeJ_T0031882.1 MGP_C3HHeJ_G0018818.1 mouse_genomes_project 11 100042769 100045712 + Zpbp2 protein_coding processed_transcript MGP_C3HHeJ_T0029745.1 MGP_C3HHeJ_G0018294.1 mouse_genomes_project 11 69466055 69467902 + MGP_C3HHeJ_P0029745 Sat2 protein_coding protein_coding MGP_C3HHeJ_T0029746.1 MGP_C3HHeJ_G0018294.1 mouse_genomes_project 11 69466083 69467490 + Sat2 protein_coding retained_intron MGP_C3HHeJ_T0029747.1 MGP_C3HHeJ_G0018294.1 mouse_genomes_project 11 69466083 69467902 + MGP_C3HHeJ_P0029747 Sat2 protein_coding protein_coding MGP_C3HHeJ_T0006193.1 MGP_C3HHeJ_G0005166.1 mouse_genomes_project 11 71471291 71530210 + 9230020A06Rik lincRNA lincRNA MGP_C3HHeJ_T0006194.1 MGP_C3HHeJ_G0005166.1 mouse_genomes_project 11 71504798 71529503 + 9230020A06Rik lincRNA lincRNA MGP_C3HHeJ_T0003252.1 MGP_C3HHeJ_G0003003.1 mouse_genomes_project 11 109107304 109107531 + antisense antisense MGP_C3HHeJ_T0029473.1 MGP_C3HHeJ_G0018229.1 mouse_genomes_project 11 64829363 64924357 - MGP_C3HHeJ_P0029473 Myocd protein_coding protein_coding MGP_C3HHeJ_T0029474.1 MGP_C3HHeJ_G0018229.1 mouse_genomes_project 11 64829376 64924405 - MGP_C3HHeJ_P0029474 Myocd protein_coding protein_coding MGP_C3HHeJ_T0029475.1 MGP_C3HHeJ_G0018229.1 mouse_genomes_project 11 64829575 64834960 - Myocd protein_coding processed_transcript MGP_C3HHeJ_T0029476.1 MGP_C3HHeJ_G0018229.1 mouse_genomes_project 11 64831230 64871330 - MGP_C3HHeJ_P0029476 Myocd protein_coding protein_coding MGP_C3HHeJ_T0029477.1 MGP_C3HHeJ_G0018229.1 mouse_genomes_project 11 64848866 64858218 - MGP_C3HHeJ_P0029477 Myocd protein_coding protein_coding MGP_C3HHeJ_T0029478.1 MGP_C3HHeJ_G0018229.1 mouse_genomes_project 11 64876504 64924270 - Myocd protein_coding processed_transcript MGP_C3HHeJ_T0032027.1 MGP_C3HHeJ_G0018883.1 mouse_genomes_project 11 101625678 101627566 - MGP_C3HHeJ_P0032027 Krtap16-1 protein_coding protein_coding MGP_C3HHeJ_T0100041.1 MGP_C3HHeJ_G0038235.1 mouse_genomes_project 11 94045007 94045150 + Gm25113 snoRNA snoRNA MGP_C3HHeJ_T0032038.1 MGP_C3HHeJ_G0018892.1 mouse_genomes_project 11 101763573 101769329 - MGP_C3HHeJ_P0032038 Krt13 protein_coding protein_coding MGP_C3HHeJ_T0032039.1 MGP_C3HHeJ_G0018892.1 mouse_genomes_project 11 101764147 101765081 - Krt13 protein_coding retained_intron MGP_C3HHeJ_T0032040.1 MGP_C3HHeJ_G0018892.1 mouse_genomes_project 11 101765391 101766824 - Krt13 protein_coding processed_transcript MGP_C3HHeJ_T0029013.1 MGP_C3HHeJ_G0018110.1 mouse_genomes_project 11 57811732 57812792 - MGP_C3HHeJ_P0029013 Olfr329-ps protein_coding protein_coding MGP_C3HHeJ_T0016996.1 MGP_C3HHeJ_G0014948.1 mouse_genomes_project 11 78600462 78601571 - Gm11193 processed_transcript processed_transcript MGP_C3HHeJ_T0032608.1 MGP_C3HHeJ_G0019010.1 mouse_genomes_project 11 105109201 105121086 - MGP_C3HHeJ_P0032608 1700023F06Rik protein_coding protein_coding MGP_C3HHeJ_T0032609.1 MGP_C3HHeJ_G0019010.1 mouse_genomes_project 11 105109204 105121096 - MGP_C3HHeJ_P0032609 1700023F06Rik protein_coding protein_coding MGP_C3HHeJ_T0032610.1 MGP_C3HHeJ_G0019010.1 mouse_genomes_project 11 105109673 105121060 - MGP_C3HHeJ_P0032610 1700023F06Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032611.1 MGP_C3HHeJ_G0019010.1 mouse_genomes_project 11 105110582 105121061 - MGP_C3HHeJ_P0032611 1700023F06Rik protein_coding protein_coding MGP_C3HHeJ_T0032612.1 MGP_C3HHeJ_G0019010.1 mouse_genomes_project 11 105110955 105121086 - 1700023F06Rik protein_coding retained_intron MGP_C3HHeJ_T0028815.1 MGP_C3HHeJ_G0018053.1 mouse_genomes_project 11 52690078 52749599 - MGP_C3HHeJ_P0028815 Rad50 protein_coding protein_coding MGP_C3HHeJ_T0028816.1 MGP_C3HHeJ_G0018053.1 mouse_genomes_project 11 52716688 52749599 - MGP_C3HHeJ_P0028816 Rad50 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028817.1 MGP_C3HHeJ_G0018053.1 mouse_genomes_project 11 52721876 52723254 - Rad50 protein_coding processed_transcript MGP_C3HHeJ_T0028818.1 MGP_C3HHeJ_G0018053.1 mouse_genomes_project 11 52726296 52749575 - MGP_C3HHeJ_P0028818 Rad50 protein_coding protein_coding MGP_C3HHeJ_T0028819.1 MGP_C3HHeJ_G0018053.1 mouse_genomes_project 11 52733216 52736297 - Rad50 protein_coding processed_transcript MGP_C3HHeJ_T0032629.1 MGP_C3HHeJ_G0019014.1 mouse_genomes_project 11 105281238 105330300 - MGP_C3HHeJ_P0032629 Plekhm1 protein_coding protein_coding MGP_C3HHeJ_T0032630.1 MGP_C3HHeJ_G0019014.1 mouse_genomes_project 11 105284448 105312369 - MGP_C3HHeJ_P0032630 Plekhm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027651.1 MGP_C3HHeJ_G0017755.1 mouse_genomes_project 11 2495668 2500935 + MGP_C3HHeJ_P0027651 Xbp1 protein_coding protein_coding MGP_C3HHeJ_T0027652.1 MGP_C3HHeJ_G0017755.1 mouse_genomes_project 11 2496014 2499068 + Xbp1 protein_coding retained_intron MGP_C3HHeJ_T0027653.1 MGP_C3HHeJ_G0017755.1 mouse_genomes_project 11 2496672 2499985 + MGP_C3HHeJ_P0027653 Xbp1 protein_coding protein_coding MGP_C3HHeJ_T0027654.1 MGP_C3HHeJ_G0017755.1 mouse_genomes_project 11 2496932 2500147 + MGP_C3HHeJ_P0027654 Xbp1 protein_coding protein_coding MGP_C3HHeJ_T0031133.1 MGP_C3HHeJ_G0018635.1 mouse_genomes_project 11 86005495 86045253 + MGP_C3HHeJ_P0031133 Ppm1d protein_coding protein_coding MGP_C3HHeJ_T0031134.1 MGP_C3HHeJ_G0018635.1 mouse_genomes_project 11 86006415 86035421 + MGP_C3HHeJ_P0031134 Ppm1d protein_coding protein_coding MGP_C3HHeJ_T0098786.1 MGP_C3HHeJ_G0036980.1 mouse_genomes_project 11 71998547 71998650 + Gm23226 snRNA snRNA MGP_C3HHeJ_T0006307.1 MGP_C3HHeJ_G0005249.1 mouse_genomes_project 11 123973654 123974221 - Gm11791 lincRNA lincRNA MGP_C3HHeJ_T0031930.1 MGP_C3HHeJ_G0018829.1 mouse_genomes_project 11 100323658 100348129 + MGP_C3HHeJ_P0031930 Casc3 protein_coding protein_coding MGP_C3HHeJ_T0031931.1 MGP_C3HHeJ_G0018829.1 mouse_genomes_project 11 100323836 100348121 + MGP_C3HHeJ_P0031931 Casc3 protein_coding protein_coding MGP_C3HHeJ_T0031932.1 MGP_C3HHeJ_G0018829.1 mouse_genomes_project 11 100324178 100324957 + Casc3 protein_coding processed_transcript MGP_C3HHeJ_T0031933.1 MGP_C3HHeJ_G0018829.1 mouse_genomes_project 11 100324189 100337091 + Casc3 protein_coding processed_transcript MGP_C3HHeJ_T0012581.1 MGP_C3HHeJ_G0010685.1 mouse_genomes_project 11 86907837 86909185 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003259.1 MGP_C3HHeJ_G0003009.1 mouse_genomes_project 11 110155818 110156194 + Gm11657 antisense antisense MGP_C3HHeJ_T0032541.1 MGP_C3HHeJ_G0018996.1 mouse_genomes_project 11 104727898 104730090 + MGP_C3HHeJ_P0032541 Higd1b protein_coding protein_coding MGP_C3HHeJ_T0032542.1 MGP_C3HHeJ_G0018996.1 mouse_genomes_project 11 104728345 104730090 + MGP_C3HHeJ_P0032542 Higd1b protein_coding protein_coding MGP_C3HHeJ_T0032543.1 MGP_C3HHeJ_G0018996.1 mouse_genomes_project 11 104728495 104730090 + MGP_C3HHeJ_P0032543 Higd1b protein_coding protein_coding MGP_C3HHeJ_T0031007.1 MGP_C3HHeJ_G0018601.1 mouse_genomes_project 11 84017238 84024742 - MGP_C3HHeJ_P0031007 Gas2l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031008.1 MGP_C3HHeJ_G0018601.1 mouse_genomes_project 11 84017238 84024742 - MGP_C3HHeJ_P0031008 Gas2l2 protein_coding protein_coding MGP_C3HHeJ_T0032691.1 MGP_C3HHeJ_G0019030.1 mouse_genomes_project 11 106659899 106739842 + MGP_C3HHeJ_P0032691 protein_coding protein_coding MGP_C3HHeJ_T0032692.1 MGP_C3HHeJ_G0019030.1 mouse_genomes_project 11 106684956 106707824 + protein_coding processed_transcript MGP_C3HHeJ_T0006188.1 MGP_C3HHeJ_G0005161.1 mouse_genomes_project 11 70551409 70553944 - Gm12315 lincRNA lincRNA MGP_C3HHeJ_T0031036.1 MGP_C3HHeJ_G0018614.1 mouse_genomes_project 11 84360594 84366299 + MGP_C3HHeJ_P0031036 Wfdc21 protein_coding protein_coding MGP_C3HHeJ_T0030495.1 MGP_C3HHeJ_G0018476.1 mouse_genomes_project 11 75939787 75967773 - MGP_C3HHeJ_P0030495 Doc2b protein_coding protein_coding MGP_C3HHeJ_T0009641.1 MGP_C3HHeJ_G0007774.1 mouse_genomes_project 11 87322271 87322363 - Mir21a miRNA miRNA MGP_C3HHeJ_T0016947.1 MGP_C3HHeJ_G0014919.1 mouse_genomes_project 11 20587236 20597472 + Gm12059 processed_transcript processed_transcript MGP_C3HHeJ_T0003222.1 MGP_C3HHeJ_G0002977.1 mouse_genomes_project 11 100970502 100971281 + A830036E02Rik antisense antisense MGP_C3HHeJ_T0003223.1 MGP_C3HHeJ_G0002977.1 mouse_genomes_project 11 100970789 100976618 + A830036E02Rik antisense antisense MGP_C3HHeJ_T0003224.1 MGP_C3HHeJ_G0002977.1 mouse_genomes_project 11 100970794 100971824 + A830036E02Rik antisense antisense MGP_C3HHeJ_T0003225.1 MGP_C3HHeJ_G0002977.1 mouse_genomes_project 11 100973509 100979017 + A830036E02Rik antisense antisense MGP_C3HHeJ_T0027638.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2064475 2093534 - MGP_C3HHeJ_P0027638 Emid1 protein_coding protein_coding MGP_C3HHeJ_T0027639.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2064475 2114725 - MGP_C3HHeJ_P0027639 Emid1 protein_coding protein_coding MGP_C3HHeJ_T0027640.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2064476 2114708 - MGP_C3HHeJ_P0027640 Emid1 protein_coding protein_coding MGP_C3HHeJ_T0027641.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2064481 2092406 - MGP_C3HHeJ_P0027641 Emid1 protein_coding protein_coding MGP_C3HHeJ_T0027642.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2064855 2091998 - Emid1 protein_coding retained_intron MGP_C3HHeJ_T0027643.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2065117 2091819 - MGP_C3HHeJ_P0027643 Emid1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027644.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2094730 2114705 - MGP_C3HHeJ_P0027644 Emid1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027645.1 MGP_C3HHeJ_G0017752.1 mouse_genomes_project 11 2098163 2112752 - Emid1 protein_coding processed_transcript MGP_C3HHeJ_T0033901.1 MGP_C3HHeJ_G0019275.1 mouse_genomes_project 11 123588186 123591443 - MGP_C3HHeJ_P0033901 Cbr2 protein_coding protein_coding MGP_C3HHeJ_T0033902.1 MGP_C3HHeJ_G0019275.1 mouse_genomes_project 11 123588201 123589423 - Cbr2 protein_coding retained_intron MGP_C3HHeJ_T0033903.1 MGP_C3HHeJ_G0019275.1 mouse_genomes_project 11 123588476 123591273 - MGP_C3HHeJ_P0033903 Cbr2 protein_coding protein_coding MGP_C3HHeJ_T0033904.1 MGP_C3HHeJ_G0019275.1 mouse_genomes_project 11 123589430 123591281 - Cbr2 protein_coding retained_intron MGP_C3HHeJ_T0012436.1 MGP_C3HHeJ_G0010540.1 mouse_genomes_project 11 28542056 28542806 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030101.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70790814 70901714 + MGP_C3HHeJ_P0030101 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030102.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70790818 70899904 + Rabep1 protein_coding retained_intron MGP_C3HHeJ_T0030103.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70790828 70852934 + MGP_C3HHeJ_P0030103 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030104.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70790835 70899899 + MGP_C3HHeJ_P0030104 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030105.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70790961 70899541 + MGP_C3HHeJ_P0030105 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030106.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70790978 70899247 + MGP_C3HHeJ_P0030106 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030107.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70791011 70899085 + MGP_C3HHeJ_P0030107 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030108.1 MGP_C3HHeJ_G0018370.1 mouse_genomes_project 11 70791011 70899085 + MGP_C3HHeJ_P0030108 Rabep1 protein_coding protein_coding MGP_C3HHeJ_T0030124.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928539 70936161 + MGP_C3HHeJ_P0030124 Rpain protein_coding protein_coding MGP_C3HHeJ_T0030125.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928553 70930246 + MGP_C3HHeJ_P0030125 Rpain protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030126.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928806 70932490 + Rpain protein_coding retained_intron MGP_C3HHeJ_T0030127.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928812 70930676 + Rpain protein_coding retained_intron MGP_C3HHeJ_T0030128.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928817 70931818 + Rpain protein_coding retained_intron MGP_C3HHeJ_T0030129.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928833 70936015 + MGP_C3HHeJ_P0030129 Rpain protein_coding protein_coding MGP_C3HHeJ_T0030130.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928833 70936015 + MGP_C3HHeJ_P0030130 Rpain protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030131.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928833 70936015 + MGP_C3HHeJ_P0030131 Rpain protein_coding protein_coding MGP_C3HHeJ_T0030132.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928833 70936015 + MGP_C3HHeJ_P0030132 Rpain protein_coding protein_coding MGP_C3HHeJ_T0030133.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928833 70936015 + MGP_C3HHeJ_P0030133 Rpain protein_coding protein_coding MGP_C3HHeJ_T0030134.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70928855 70932757 + Rpain protein_coding retained_intron MGP_C3HHeJ_T0030135.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70931129 70936133 + Rpain protein_coding retained_intron MGP_C3HHeJ_T0030136.1 MGP_C3HHeJ_G0018372.1 mouse_genomes_project 11 70933067 70936129 + Rpain protein_coding retained_intron MGP_C3HHeJ_T0032929.1 MGP_C3HHeJ_G0019081.1 mouse_genomes_project 11 111426038 111504752 - MGP_C3HHeJ_P0032929 Rgs9 protein_coding protein_coding MGP_C3HHeJ_T0032930.1 MGP_C3HHeJ_G0019081.1 mouse_genomes_project 11 111426044 111453112 - MGP_C3HHeJ_P0032930 Rgs9 protein_coding protein_coding MGP_C3HHeJ_T0032931.1 MGP_C3HHeJ_G0019081.1 mouse_genomes_project 11 111437174 111504689 - MGP_C3HHeJ_P0032931 Rgs9 protein_coding protein_coding MGP_C3HHeJ_T0032932.1 MGP_C3HHeJ_G0019081.1 mouse_genomes_project 11 111442495 111449926 - Rgs9 protein_coding processed_transcript MGP_C3HHeJ_T0032933.1 MGP_C3HHeJ_G0019081.1 mouse_genomes_project 11 111459811 111504729 - MGP_C3HHeJ_P0032933 Rgs9 protein_coding protein_coding MGP_C3HHeJ_T0032934.1 MGP_C3HHeJ_G0019081.1 mouse_genomes_project 11 111462464 111504617 - MGP_C3HHeJ_P0032934 Rgs9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032842.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108859703 108889287 + MGP_C3HHeJ_P0032842 Cep95 protein_coding protein_coding MGP_C3HHeJ_T0032843.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108859726 108889280 + MGP_C3HHeJ_P0032843 Cep95 protein_coding protein_coding MGP_C3HHeJ_T0032844.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108859738 108861730 + Cep95 protein_coding processed_transcript MGP_C3HHeJ_T0032845.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108882739 108884266 + Cep95 protein_coding processed_transcript MGP_C3HHeJ_T0032846.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108884649 108886205 + Cep95 protein_coding processed_transcript MGP_C3HHeJ_T0032847.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108888260 108889288 + Cep95 protein_coding processed_transcript MGP_C3HHeJ_T0032848.1 MGP_C3HHeJ_G0019065.1 mouse_genomes_project 11 108888305 108890357 + MGP_C3HHeJ_P0032848 Cep95 protein_coding protein_coding MGP_C3HHeJ_T0030137.1 MGP_C3HHeJ_G0018373.1 mouse_genomes_project 11 70936163 70941357 - MGP_C3HHeJ_P0030137 C1qbp protein_coding protein_coding MGP_C3HHeJ_T0030138.1 MGP_C3HHeJ_G0018373.1 mouse_genomes_project 11 70936175 70937200 - C1qbp protein_coding retained_intron MGP_C3HHeJ_T0030139.1 MGP_C3HHeJ_G0018373.1 mouse_genomes_project 11 70939360 70941338 - C1qbp protein_coding retained_intron MGP_C3HHeJ_T0028385.1 MGP_C3HHeJ_G0017933.1 mouse_genomes_project 11 42170757 42238176 - MGP_C3HHeJ_P0028385 Adra1b protein_coding protein_coding MGP_C3HHeJ_T0028386.1 MGP_C3HHeJ_G0017933.1 mouse_genomes_project 11 42170757 42305009 - MGP_C3HHeJ_P0028386 Adra1b protein_coding protein_coding MGP_C3HHeJ_T0028387.1 MGP_C3HHeJ_G0017933.1 mouse_genomes_project 11 42172174 42305009 - MGP_C3HHeJ_P0028387 Adra1b protein_coding protein_coding MGP_C3HHeJ_T0006180.1 MGP_C3HHeJ_G0005156.1 mouse_genomes_project 11 63791480 63809587 + Gm12290 lincRNA lincRNA MGP_C3HHeJ_T0012663.1 MGP_C3HHeJ_G0010767.1 mouse_genomes_project 11 123968039 123968207 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029033.1 MGP_C3HHeJ_G0018125.1 mouse_genomes_project 11 58066952 58072014 + MGP_C3HHeJ_P0029033 Olfr315 protein_coding protein_coding MGP_C3HHeJ_T0029034.1 MGP_C3HHeJ_G0018125.1 mouse_genomes_project 11 58071594 58072592 + MGP_C3HHeJ_P0029034 Olfr315 protein_coding protein_coding MGP_C3HHeJ_T0012518.1 MGP_C3HHeJ_G0010622.1 mouse_genomes_project 11 61856131 61856438 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017066.1 MGP_C3HHeJ_G0014984.1 mouse_genomes_project 11 122955292 122957074 + Gm11769 processed_transcript processed_transcript MGP_C3HHeJ_T0027479.1 MGP_C3HHeJ_G0017717.1 mouse_genomes_project 11 581795 747425 - MGP_C3HHeJ_P0027479 Osbp2 protein_coding protein_coding MGP_C3HHeJ_T0027480.1 MGP_C3HHeJ_G0017717.1 mouse_genomes_project 11 581797 747315 - MGP_C3HHeJ_P0027480 Osbp2 protein_coding protein_coding MGP_C3HHeJ_T0027481.1 MGP_C3HHeJ_G0017717.1 mouse_genomes_project 11 581982 603251 - MGP_C3HHeJ_P0027481 Osbp2 protein_coding protein_coding MGP_C3HHeJ_T0027482.1 MGP_C3HHeJ_G0017717.1 mouse_genomes_project 11 598888 656742 - MGP_C3HHeJ_P0027482 Osbp2 protein_coding protein_coding MGP_C3HHeJ_T0027483.1 MGP_C3HHeJ_G0017717.1 mouse_genomes_project 11 598948 657687 - MGP_C3HHeJ_P0027483 Osbp2 protein_coding protein_coding MGP_C3HHeJ_T0027484.1 MGP_C3HHeJ_G0017717.1 mouse_genomes_project 11 605436 747425 - Osbp2 protein_coding processed_transcript MGP_C3HHeJ_T0012650.1 MGP_C3HHeJ_G0010754.1 mouse_genomes_project 11 118059370 118059529 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027775.1 MGP_C3HHeJ_G0017784.1 mouse_genomes_project 11 3703052 3725500 + MGP_C3HHeJ_P0027775 Ramp3 protein_coding protein_coding MGP_C3HHeJ_T0027776.1 MGP_C3HHeJ_G0017784.1 mouse_genomes_project 11 3703096 3725497 + Ramp3 protein_coding processed_transcript MGP_C3HHeJ_T0006233.1 MGP_C3HHeJ_G0005193.1 mouse_genomes_project 11 89616739 89622614 + C030037D09Rik lincRNA lincRNA MGP_C3HHeJ_T0006234.1 MGP_C3HHeJ_G0005193.1 mouse_genomes_project 11 89616898 89630516 + C030037D09Rik lincRNA lincRNA MGP_C3HHeJ_T0006235.1 MGP_C3HHeJ_G0005193.1 mouse_genomes_project 11 89618583 89624187 + C030037D09Rik lincRNA lincRNA MGP_C3HHeJ_T0028245.1 MGP_C3HHeJ_G0017894.1 mouse_genomes_project 11 30775562 30782190 - MGP_C3HHeJ_P0028245 Smim23 protein_coding protein_coding MGP_C3HHeJ_T0028246.1 MGP_C3HHeJ_G0017894.1 mouse_genomes_project 11 30777405 30782233 - MGP_C3HHeJ_P0028246 Smim23 protein_coding protein_coding MGP_C3HHeJ_T0028550.1 MGP_C3HHeJ_G0017987.1 mouse_genomes_project 11 48432511 48477175 - MGP_C3HHeJ_P0028550 Cnot6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028551.1 MGP_C3HHeJ_G0017987.1 mouse_genomes_project 11 48432515 48477374 - MGP_C3HHeJ_P0028551 Cnot6 protein_coding protein_coding MGP_C3HHeJ_T0028552.1 MGP_C3HHeJ_G0017987.1 mouse_genomes_project 11 48435710 48466072 - Cnot6 protein_coding processed_transcript MGP_C3HHeJ_T0028553.1 MGP_C3HHeJ_G0017987.1 mouse_genomes_project 11 48435725 48477361 - MGP_C3HHeJ_P0028553 Cnot6 protein_coding protein_coding MGP_C3HHeJ_T0028554.1 MGP_C3HHeJ_G0017987.1 mouse_genomes_project 11 48438396 48441978 - Cnot6 protein_coding processed_transcript MGP_C3HHeJ_T0028555.1 MGP_C3HHeJ_G0017987.1 mouse_genomes_project 11 48442729 48445080 - Cnot6 protein_coding processed_transcript MGP_C3HHeJ_T0029713.1 MGP_C3HHeJ_G0018283.1 mouse_genomes_project 11 69221309 69225636 - protein_coding processed_transcript MGP_C3HHeJ_T0029714.1 MGP_C3HHeJ_G0018283.1 mouse_genomes_project 11 69222647 69225338 - MGP_C3HHeJ_P0029714 protein_coding protein_coding MGP_C3HHeJ_T0029716.1 MGP_C3HHeJ_G0018283.1 mouse_genomes_project 11 69222996 69225338 - MGP_C3HHeJ_P0029716 protein_coding protein_coding MGP_C3HHeJ_T0009568.1 MGP_C3HHeJ_G0007701.1 mouse_genomes_project 11 13954014 13954115 - Gm24714 miRNA miRNA MGP_C3HHeJ_T0029187.1 MGP_C3HHeJ_G0018169.1 mouse_genomes_project 11 59803067 59820512 - MGP_C3HHeJ_P0029187 Atpaf2 protein_coding protein_coding MGP_C3HHeJ_T0029188.1 MGP_C3HHeJ_G0018169.1 mouse_genomes_project 11 59803924 59820479 - MGP_C3HHeJ_P0029188 Atpaf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029189.1 MGP_C3HHeJ_G0018169.1 mouse_genomes_project 11 59806286 59820503 - Atpaf2 protein_coding processed_transcript MGP_C3HHeJ_T0029190.1 MGP_C3HHeJ_G0018169.1 mouse_genomes_project 11 59808241 59820496 - Atpaf2 protein_coding processed_transcript MGP_C3HHeJ_T0029191.1 MGP_C3HHeJ_G0018169.1 mouse_genomes_project 11 59809819 59821918 - Atpaf2 protein_coding processed_transcript MGP_C3HHeJ_T0029192.1 MGP_C3HHeJ_G0018169.1 mouse_genomes_project 11 59811652 59820497 - Atpaf2 protein_coding retained_intron MGP_C3HHeJ_T0031773.1 MGP_C3HHeJ_G0018793.1 mouse_genomes_project 11 99140182 99176204 - MGP_C3HHeJ_P0031773 Pip4k2b protein_coding protein_coding MGP_C3HHeJ_T0031774.1 MGP_C3HHeJ_G0018793.1 mouse_genomes_project 11 99146616 99153668 - Pip4k2b protein_coding processed_transcript MGP_C3HHeJ_T0003270.1 MGP_C3HHeJ_G0003017.1 mouse_genomes_project 11 112169082 112170902 + Gm11697 antisense antisense MGP_C3HHeJ_T0033907.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123643705 123645767 + Gps1 protein_coding retained_intron MGP_C3HHeJ_T0033908.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123643708 123650282 + MGP_C3HHeJ_P0033908 Gps1 protein_coding protein_coding MGP_C3HHeJ_T0033909.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123643708 123649968 + MGP_C3HHeJ_P0033909 Gps1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033910.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123643734 123649155 + MGP_C3HHeJ_P0033910 Gps1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0033911.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123643738 123650287 + MGP_C3HHeJ_P0033911 Gps1 protein_coding protein_coding MGP_C3HHeJ_T0033912.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123643948 123650287 + MGP_C3HHeJ_P0033912 Gps1 protein_coding protein_coding MGP_C3HHeJ_T0033913.1 MGP_C3HHeJ_G0019277.1 mouse_genomes_project 11 123646205 123647195 + Gps1 protein_coding retained_intron MGP_C3HHeJ_T0098769.1 MGP_C3HHeJ_G0036963.1 mouse_genomes_project 11 38111727 38111872 + Gm24192 snRNA snRNA MGP_C3HHeJ_T0027779.1 MGP_C3HHeJ_G0017786.1 mouse_genomes_project 11 4140558 4257021 + MGP_C3HHeJ_P0027779 Adcy1 protein_coding protein_coding MGP_C3HHeJ_T0027780.1 MGP_C3HHeJ_G0017786.1 mouse_genomes_project 11 4238361 4251395 + Adcy1 protein_coding processed_transcript MGP_C3HHeJ_T0028970.1 MGP_C3HHeJ_G0018094.1 mouse_genomes_project 11 57341081 57356222 + MGP_C3HHeJ_P0028970 Cnot8 protein_coding protein_coding MGP_C3HHeJ_T0028971.1 MGP_C3HHeJ_G0018094.1 mouse_genomes_project 11 57341157 57356222 + MGP_C3HHeJ_P0028971 Cnot8 protein_coding protein_coding MGP_C3HHeJ_T0028972.1 MGP_C3HHeJ_G0018094.1 mouse_genomes_project 11 57341294 57348238 + MGP_C3HHeJ_P0028972 Cnot8 protein_coding protein_coding MGP_C3HHeJ_T0028973.1 MGP_C3HHeJ_G0018094.1 mouse_genomes_project 11 57350894 57354886 + Cnot8 protein_coding processed_transcript MGP_C3HHeJ_T0028920.1 MGP_C3HHeJ_G0018075.1 mouse_genomes_project 11 54179433 54209131 - MGP_C3HHeJ_P0028920 Ccdc69 protein_coding protein_coding MGP_C3HHeJ_T0028921.1 MGP_C3HHeJ_G0018075.1 mouse_genomes_project 11 54180433 54209155 - MGP_C3HHeJ_P0028921 Ccdc69 protein_coding protein_coding MGP_C3HHeJ_T0003230.1 MGP_C3HHeJ_G0002982.1 mouse_genomes_project 11 103085122 103093798 - Gm28156 antisense antisense MGP_C3HHeJ_T0030323.1 MGP_C3HHeJ_G0018428.1 mouse_genomes_project 11 73900761 73903524 - MGP_C3HHeJ_P0030323 Olfr392 protein_coding protein_coding MGP_C3HHeJ_T0030324.1 MGP_C3HHeJ_G0018428.1 mouse_genomes_project 11 73901375 73903521 - MGP_C3HHeJ_P0030324 Olfr392 protein_coding protein_coding MGP_C3HHeJ_T0006192.1 MGP_C3HHeJ_G0005165.1 mouse_genomes_project 11 71386536 71393730 - Gm16013 lincRNA lincRNA MGP_C3HHeJ_T0028556.1 MGP_C3HHeJ_G0017988.1 mouse_genomes_project 11 48560745 48574391 + Gfpt2 protein_coding retained_intron MGP_C3HHeJ_T0028557.1 MGP_C3HHeJ_G0017988.1 mouse_genomes_project 11 48560754 48605238 + MGP_C3HHeJ_P0028557 Gfpt2 protein_coding protein_coding MGP_C3HHeJ_T0006224.1 MGP_C3HHeJ_G0005186.1 mouse_genomes_project 11 85381559 85384990 - 1700109G15Rik lincRNA lincRNA MGP_C3HHeJ_T0033585.1 MGP_C3HHeJ_G0019216.1 mouse_genomes_project 11 121157119 121170040 - MGP_C3HHeJ_P0033585 Cant1 protein_coding protein_coding MGP_C3HHeJ_T0033586.1 MGP_C3HHeJ_G0019216.1 mouse_genomes_project 11 121157119 121170006 - MGP_C3HHeJ_P0033586 Cant1 protein_coding protein_coding MGP_C3HHeJ_T0033587.1 MGP_C3HHeJ_G0019216.1 mouse_genomes_project 11 121157120 121169977 - MGP_C3HHeJ_P0033587 Cant1 protein_coding protein_coding MGP_C3HHeJ_T0033588.1 MGP_C3HHeJ_G0019216.1 mouse_genomes_project 11 121158474 121170006 - MGP_C3HHeJ_P0033588 Cant1 protein_coding protein_coding MGP_C3HHeJ_T0033589.1 MGP_C3HHeJ_G0019216.1 mouse_genomes_project 11 121158474 121166632 - MGP_C3HHeJ_P0033589 Cant1 protein_coding protein_coding MGP_C3HHeJ_T0033590.1 MGP_C3HHeJ_G0019216.1 mouse_genomes_project 11 121158474 121169977 - MGP_C3HHeJ_P0033590 Cant1 protein_coding protein_coding MGP_C3HHeJ_T0012500.1 MGP_C3HHeJ_G0010604.1 mouse_genomes_project 11 57332720 57333388 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003096.1 MGP_C3HHeJ_G0002877.1 mouse_genomes_project 11 52766484 52767150 - Gm12214 antisense antisense MGP_C3HHeJ_T0029604.1 MGP_C3HHeJ_G0018262.1 mouse_genomes_project 11 68745518 68758938 - MGP_C3HHeJ_P0029604 Arhgef15 protein_coding protein_coding MGP_C3HHeJ_T0029605.1 MGP_C3HHeJ_G0018262.1 mouse_genomes_project 11 68745520 68761328 - MGP_C3HHeJ_P0029605 Arhgef15 protein_coding protein_coding MGP_C3HHeJ_T0029606.1 MGP_C3HHeJ_G0018262.1 mouse_genomes_project 11 68746890 68749744 - Arhgef15 protein_coding processed_transcript MGP_C3HHeJ_T0029607.1 MGP_C3HHeJ_G0018262.1 mouse_genomes_project 11 68748664 68750127 - Arhgef15 protein_coding processed_transcript MGP_C3HHeJ_T0029608.1 MGP_C3HHeJ_G0018262.1 mouse_genomes_project 11 68748810 68749967 - Arhgef15 protein_coding processed_transcript MGP_C3HHeJ_T0029609.1 MGP_C3HHeJ_G0018262.1 mouse_genomes_project 11 68750598 68754861 - Arhgef15 protein_coding retained_intron MGP_C3HHeJ_T0012345.1 MGP_C3HHeJ_G0010449.1 mouse_genomes_project 11 505065 505903 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012440.1 MGP_C3HHeJ_G0010544.1 mouse_genomes_project 11 28875272 28875876 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011703.1 MGP_C3HHeJ_G0009833.1 mouse_genomes_project 11 74003292 74007237 + MGP_C3HHeJ_P0011703 Olfr396-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011704.1 MGP_C3HHeJ_G0009833.1 mouse_genomes_project 11 74006517 74007150 + MGP_C3HHeJ_P0011704 Olfr396-ps1 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0029694.1 MGP_C3HHeJ_G0018279.1 mouse_genomes_project 11 69146681 69148495 + MGP_C3HHeJ_P0029694 Trappc1 protein_coding protein_coding MGP_C3HHeJ_T0029695.1 MGP_C3HHeJ_G0018279.1 mouse_genomes_project 11 69146764 69148495 + MGP_C3HHeJ_P0029695 Trappc1 protein_coding protein_coding MGP_C3HHeJ_T0029696.1 MGP_C3HHeJ_G0018279.1 mouse_genomes_project 11 69146776 69148495 + MGP_C3HHeJ_P0029696 Trappc1 protein_coding protein_coding MGP_C3HHeJ_T0029697.1 MGP_C3HHeJ_G0018279.1 mouse_genomes_project 11 69146858 69148495 + MGP_C3HHeJ_P0029697 Trappc1 protein_coding protein_coding MGP_C3HHeJ_T0029698.1 MGP_C3HHeJ_G0018279.1 mouse_genomes_project 11 69147139 69147934 + Trappc1 protein_coding processed_transcript MGP_C3HHeJ_T0027760.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3660439 3670855 - MGP_C3HHeJ_P0027760 Tbrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027761.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3660440 3670879 - MGP_C3HHeJ_P0027761 Tbrg4 protein_coding protein_coding MGP_C3HHeJ_T0027762.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3661248 3670855 - MGP_C3HHeJ_P0027762 Tbrg4 protein_coding protein_coding MGP_C3HHeJ_T0027763.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3661250 3670855 - MGP_C3HHeJ_P0027763 Tbrg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027764.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3662079 3662855 - Tbrg4 protein_coding retained_intron MGP_C3HHeJ_T0027765.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3664381 3665739 - Tbrg4 protein_coding processed_transcript MGP_C3HHeJ_T0027766.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3664411 3665269 - Tbrg4 protein_coding retained_intron MGP_C3HHeJ_T0027767.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3664825 3666075 - Tbrg4 protein_coding retained_intron MGP_C3HHeJ_T0027768.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3665003 3665889 - Tbrg4 protein_coding processed_transcript MGP_C3HHeJ_T0027769.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3665820 3670879 - MGP_C3HHeJ_P0027769 Tbrg4 protein_coding protein_coding MGP_C3HHeJ_T0027770.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3668029 3670834 - Tbrg4 protein_coding processed_transcript MGP_C3HHeJ_T0027771.1 MGP_C3HHeJ_G0017782.1 mouse_genomes_project 11 3668718 3670293 - MGP_C3HHeJ_P0027771 Tbrg4 protein_coding protein_coding MGP_C3HHeJ_T0032995.1 MGP_C3HHeJ_G0019097.1 mouse_genomes_project 11 113260433 113323224 + MGP_C3HHeJ_P0032995 Kcnj16 protein_coding protein_coding MGP_C3HHeJ_T0032996.1 MGP_C3HHeJ_G0019097.1 mouse_genomes_project 11 113260433 113323227 + MGP_C3HHeJ_P0032996 Kcnj16 protein_coding protein_coding MGP_C3HHeJ_T0032997.1 MGP_C3HHeJ_G0019097.1 mouse_genomes_project 11 113260464 113320093 + MGP_C3HHeJ_P0032997 Kcnj16 protein_coding protein_coding MGP_C3HHeJ_T0032998.1 MGP_C3HHeJ_G0019097.1 mouse_genomes_project 11 113292799 113323227 + MGP_C3HHeJ_P0032998 Kcnj16 protein_coding protein_coding MGP_C3HHeJ_T0032999.1 MGP_C3HHeJ_G0019097.1 mouse_genomes_project 11 113319130 113319982 + MGP_C3HHeJ_P0032999 Kcnj16 protein_coding protein_coding MGP_C3HHeJ_T0033000.1 MGP_C3HHeJ_G0019097.1 mouse_genomes_project 11 113319130 113323224 + MGP_C3HHeJ_P0033000 Kcnj16 protein_coding protein_coding MGP_C3HHeJ_T0028785.1 MGP_C3HHeJ_G0018044.1 mouse_genomes_project 11 52484796 52487103 - MGP_C3HHeJ_P0028785 Gm10447 protein_coding protein_coding MGP_C3HHeJ_T0033163.1 MGP_C3HHeJ_G0019136.1 mouse_genomes_project 11 118006262 118013978 + MGP_C3HHeJ_P0033163 Trim80 protein_coding protein_coding MGP_C3HHeJ_T0098765.1 MGP_C3HHeJ_G0036959.1 mouse_genomes_project 11 27099636 27099762 + Gm23109 snRNA snRNA MGP_C3HHeJ_T0032156.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102598306 102624176 - MGP_C3HHeJ_P0032156 Stat3 protein_coding protein_coding MGP_C3HHeJ_T0032157.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102599722 102601813 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032158.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102599736 102653301 - MGP_C3HHeJ_P0032158 Stat3 protein_coding protein_coding MGP_C3HHeJ_T0032159.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102600181 102653400 - MGP_C3HHeJ_P0032159 Stat3 protein_coding protein_coding MGP_C3HHeJ_T0032160.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102600978 102605244 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032161.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102604529 102605303 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032162.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102605024 102605934 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032163.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102605471 102611802 - Stat3 protein_coding processed_transcript MGP_C3HHeJ_T0032164.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102605982 102606653 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032165.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102605984 102611023 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032166.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102615231 102618446 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032167.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102618114 102618881 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0032168.1 MGP_C3HHeJ_G0018924.1 mouse_genomes_project 11 102618690 102621259 - Stat3 protein_coding retained_intron MGP_C3HHeJ_T0003172.1 MGP_C3HHeJ_G0002940.1 mouse_genomes_project 11 81541114 81552075 + Gm11417 antisense antisense MGP_C3HHeJ_T0098799.1 MGP_C3HHeJ_G0036993.1 mouse_genomes_project 11 85848891 85848998 + Gm23506 snRNA snRNA MGP_C3HHeJ_T0003109.1 MGP_C3HHeJ_G0002888.1 mouse_genomes_project 11 57366739 57369202 + Gm12246 antisense antisense MGP_C3HHeJ_T0003167.1 MGP_C3HHeJ_G0002936.1 mouse_genomes_project 11 80002200 80018277 - Rab11fip4os1 antisense antisense MGP_C3HHeJ_T0032051.1 MGP_C3HHeJ_G0018899.1 mouse_genomes_project 11 101932851 101935942 - Krt42 protein_coding retained_intron MGP_C3HHeJ_T0032052.1 MGP_C3HHeJ_G0018899.1 mouse_genomes_project 11 101932856 101939835 - MGP_C3HHeJ_P0032052 Krt42 protein_coding protein_coding MGP_C3HHeJ_T0033894.1 MGP_C3HHeJ_G0019273.1 mouse_genomes_project 11 123572841 123575341 + MGP_C3HHeJ_P0033894 Rac3 protein_coding protein_coding MGP_C3HHeJ_T0033895.1 MGP_C3HHeJ_G0019273.1 mouse_genomes_project 11 123572944 123574978 + MGP_C3HHeJ_P0033895 Rac3 protein_coding protein_coding MGP_C3HHeJ_T0033896.1 MGP_C3HHeJ_G0019273.1 mouse_genomes_project 11 123573385 123574937 + Rac3 protein_coding processed_transcript MGP_C3HHeJ_T0012601.1 MGP_C3HHeJ_G0010705.1 mouse_genomes_project 11 97590200 97590745 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030346.1 MGP_C3HHeJ_G0018443.1 mouse_genomes_project 11 74375672 74381242 + MGP_C3HHeJ_P0030346 Olfr59 protein_coding protein_coding MGP_C3HHeJ_T0030347.1 MGP_C3HHeJ_G0018443.1 mouse_genomes_project 11 74375730 74381078 + MGP_C3HHeJ_P0030347 Olfr59 protein_coding protein_coding MGP_C3HHeJ_T0030348.1 MGP_C3HHeJ_G0018443.1 mouse_genomes_project 11 74375745 74381528 + MGP_C3HHeJ_P0030348 Olfr59 protein_coding protein_coding MGP_C3HHeJ_T0030349.1 MGP_C3HHeJ_G0018443.1 mouse_genomes_project 11 74375769 74381077 + MGP_C3HHeJ_P0030349 Olfr59 protein_coding protein_coding MGP_C3HHeJ_T0030377.1 MGP_C3HHeJ_G0018452.1 mouse_genomes_project 11 74956284 74969841 + MGP_C3HHeJ_P0030377 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030378.1 MGP_C3HHeJ_G0018452.1 mouse_genomes_project 11 74962116 74963514 + protein_coding retained_intron MGP_C3HHeJ_T0030379.1 MGP_C3HHeJ_G0018452.1 mouse_genomes_project 11 74963258 74970249 + MGP_C3HHeJ_P0030379 protein_coding protein_coding MGP_C3HHeJ_T0033787.1 MGP_C3HHeJ_G0019253.1 mouse_genomes_project 11 123303185 123310870 + Hgs protein_coding processed_transcript MGP_C3HHeJ_T0033788.1 MGP_C3HHeJ_G0019253.1 mouse_genomes_project 11 123303185 123320769 + MGP_C3HHeJ_P0033788 Hgs protein_coding protein_coding MGP_C3HHeJ_T0033789.1 MGP_C3HHeJ_G0019253.1 mouse_genomes_project 11 123303185 123312910 + MGP_C3HHeJ_P0033789 Hgs protein_coding protein_coding MGP_C3HHeJ_T0033790.1 MGP_C3HHeJ_G0019253.1 mouse_genomes_project 11 123303185 123320764 + MGP_C3HHeJ_P0033790 Hgs protein_coding protein_coding MGP_C3HHeJ_T0033791.1 MGP_C3HHeJ_G0019253.1 mouse_genomes_project 11 123303185 123320764 + MGP_C3HHeJ_P0033791 Hgs protein_coding protein_coding MGP_C3HHeJ_T0033792.1 MGP_C3HHeJ_G0019253.1 mouse_genomes_project 11 123313092 123315765 + MGP_C3HHeJ_P0033792 Hgs protein_coding protein_coding MGP_C3HHeJ_T0100003.1 MGP_C3HHeJ_G0038197.1 mouse_genomes_project 11 24975187 24975319 - Gm25387 snoRNA snoRNA MGP_C3HHeJ_T0033507.1 MGP_C3HHeJ_G0019197.1 mouse_genomes_project 11 120346624 120460536 + MGP_C3HHeJ_P0033507 Tnrc6c protein_coding protein_coding MGP_C3HHeJ_T0033508.1 MGP_C3HHeJ_G0019197.1 mouse_genomes_project 11 120346908 120460527 + Tnrc6c protein_coding retained_intron MGP_C3HHeJ_T0033509.1 MGP_C3HHeJ_G0019197.1 mouse_genomes_project 11 120347148 120460538 + MGP_C3HHeJ_P0033509 Tnrc6c protein_coding protein_coding MGP_C3HHeJ_T0033510.1 MGP_C3HHeJ_G0019197.1 mouse_genomes_project 11 120416996 120459365 + MGP_C3HHeJ_P0033510 Tnrc6c protein_coding protein_coding MGP_C3HHeJ_T0033511.1 MGP_C3HHeJ_G0019197.1 mouse_genomes_project 11 120439602 120446405 + Tnrc6c protein_coding retained_intron MGP_C3HHeJ_T0033512.1 MGP_C3HHeJ_G0019197.1 mouse_genomes_project 11 120446334 120448412 + Tnrc6c protein_coding retained_intron MGP_C3HHeJ_T0101642.1 MGP_C3HHeJ_G0039608.1 mouse_genomes_project 11 73809322 73809881 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0032890.1 MGP_C3HHeJ_G0019073.1 mouse_genomes_project 11 109848915 109862201 - MGP_C3HHeJ_P0032890 Cacng1 protein_coding protein_coding MGP_C3HHeJ_T0012619.1 MGP_C3HHeJ_G0010723.1 mouse_genomes_project 11 104351590 104351761 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030544.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76632187 76730972 - MGP_C3HHeJ_P0030544 Abr protein_coding protein_coding MGP_C3HHeJ_T0030545.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76632187 76784754 - MGP_C3HHeJ_P0030545 Abr protein_coding protein_coding MGP_C3HHeJ_T0030546.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76632188 76730549 - MGP_C3HHeJ_P0030546 Abr protein_coding protein_coding MGP_C3HHeJ_T0030547.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76632204 76686294 - MGP_C3HHeJ_P0030547 Abr protein_coding protein_coding MGP_C3HHeJ_T0030548.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76634561 76715788 - MGP_C3HHeJ_P0030548 Abr protein_coding protein_coding MGP_C3HHeJ_T0030549.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76638502 76652675 - Abr protein_coding processed_transcript MGP_C3HHeJ_T0030550.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76671338 76686134 - MGP_C3HHeJ_P0030550 Abr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030551.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76675766 76713319 - Abr protein_coding retained_intron MGP_C3HHeJ_T0030552.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76682114 76712255 - MGP_C3HHeJ_P0030552 Abr protein_coding protein_coding MGP_C3HHeJ_T0030553.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76696670 76790970 - MGP_C3HHeJ_P0030553 Abr protein_coding protein_coding MGP_C3HHeJ_T0030554.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76696724 76836523 - MGP_C3HHeJ_P0030554 Abr protein_coding protein_coding MGP_C3HHeJ_T0030555.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76696780 76827606 - MGP_C3HHeJ_P0030555 Abr protein_coding protein_coding MGP_C3HHeJ_T0030556.1 MGP_C3HHeJ_G0018488.1 mouse_genomes_project 11 76703417 76713298 - Abr protein_coding processed_transcript MGP_C3HHeJ_T0006203.1 MGP_C3HHeJ_G0005173.1 mouse_genomes_project 11 75913750 75930978 - Gm26836 lincRNA lincRNA MGP_C3HHeJ_T0030871.1 MGP_C3HHeJ_G0018561.1 mouse_genomes_project 11 80571456 80596185 + MGP_C3HHeJ_P0030871 Adap2 protein_coding protein_coding MGP_C3HHeJ_T0030872.1 MGP_C3HHeJ_G0018561.1 mouse_genomes_project 11 80571467 80583126 + MGP_C3HHeJ_P0030872 Adap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033823.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123450304 123458680 - MGP_C3HHeJ_P0033823 Pcyt2 protein_coding protein_coding MGP_C3HHeJ_T0033824.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123451213 123458669 - MGP_C3HHeJ_P0033824 Pcyt2 protein_coding protein_coding MGP_C3HHeJ_T0033825.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123451415 123452853 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033826.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123451619 123452825 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033827.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123452371 123453818 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033828.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123452948 123458652 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033829.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123453339 123454439 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033830.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123453678 123454333 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033831.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123453720 123455269 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033832.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123453773 123458657 - Pcyt2 protein_coding processed_transcript MGP_C3HHeJ_T0033833.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123455919 123458654 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0033834.1 MGP_C3HHeJ_G0019264.1 mouse_genomes_project 11 123456190 123458613 - Pcyt2 protein_coding retained_intron MGP_C3HHeJ_T0009578.1 MGP_C3HHeJ_G0007711.1 mouse_genomes_project 11 26542100 26542208 + Mir217 miRNA miRNA MGP_C3HHeJ_T0027574.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1685427 1772441 - MGP_C3HHeJ_P0027574 Nf2 protein_coding protein_coding MGP_C3HHeJ_T0027575.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1685429 1772992 - MGP_C3HHeJ_P0027575 Nf2 protein_coding protein_coding MGP_C3HHeJ_T0027576.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1687537 1705029 - Nf2 protein_coding retained_intron MGP_C3HHeJ_T0027577.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1701858 1756669 - Nf2 protein_coding processed_transcript MGP_C3HHeJ_T0027578.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1704357 1737195 - MGP_C3HHeJ_P0027578 Nf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027579.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1711106 1772650 - MGP_C3HHeJ_P0027579 Nf2 protein_coding protein_coding MGP_C3HHeJ_T0027580.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1714336 1736270 - Nf2 protein_coding processed_transcript MGP_C3HHeJ_T0027581.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1714385 1739577 - MGP_C3HHeJ_P0027581 Nf2 protein_coding protein_coding MGP_C3HHeJ_T0027582.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1719766 1741426 - MGP_C3HHeJ_P0027582 Nf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027583.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1739534 1746427 - Nf2 protein_coding processed_transcript MGP_C3HHeJ_T0027584.1 MGP_C3HHeJ_G0017743.1 mouse_genomes_project 11 1752650 1772581 - MGP_C3HHeJ_P0027584 Nf2 protein_coding protein_coding MGP_C3HHeJ_T0003095.1 MGP_C3HHeJ_G0002876.1 mouse_genomes_project 11 52492369 52493604 - Gm12212 antisense antisense MGP_C3HHeJ_T0003107.1 MGP_C3HHeJ_G0002886.1 mouse_genomes_project 11 56823290 56843215 - 4933424L21Rik antisense antisense MGP_C3HHeJ_T0009614.1 MGP_C3HHeJ_G0007747.1 mouse_genomes_project 11 69865098 69865221 + Gm44349 miRNA miRNA MGP_C3HHeJ_T0006288.1 MGP_C3HHeJ_G0005233.1 mouse_genomes_project 11 118594802 118604215 - lincRNA lincRNA MGP_C3HHeJ_T0029901.1 MGP_C3HHeJ_G0018329.1 mouse_genomes_project 11 69880884 69885018 + MGP_C3HHeJ_P0029901 Phf23 protein_coding protein_coding MGP_C3HHeJ_T0029902.1 MGP_C3HHeJ_G0018329.1 mouse_genomes_project 11 69881002 69883385 + Phf23 protein_coding retained_intron MGP_C3HHeJ_T0029903.1 MGP_C3HHeJ_G0018329.1 mouse_genomes_project 11 69881028 69885015 + MGP_C3HHeJ_P0029903 Phf23 protein_coding protein_coding MGP_C3HHeJ_T0029904.1 MGP_C3HHeJ_G0018329.1 mouse_genomes_project 11 69881739 69883760 + MGP_C3HHeJ_P0029904 Phf23 protein_coding protein_coding MGP_C3HHeJ_T0029905.1 MGP_C3HHeJ_G0018329.1 mouse_genomes_project 11 69881949 69883505 + Phf23 protein_coding processed_transcript MGP_C3HHeJ_T0029906.1 MGP_C3HHeJ_G0018329.1 mouse_genomes_project 11 69881965 69883406 + Phf23 protein_coding processed_transcript MGP_C3HHeJ_T0029684.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69122192 69123196 - Cntrob protein_coding retained_intron MGP_C3HHeJ_T0029685.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69122192 69146477 - MGP_C3HHeJ_P0029685 Cntrob protein_coding protein_coding MGP_C3HHeJ_T0029686.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69122192 69146477 - MGP_C3HHeJ_P0029686 Cntrob protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029687.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69122245 69142170 - MGP_C3HHeJ_P0029687 Cntrob protein_coding protein_coding MGP_C3HHeJ_T0029688.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69122406 69125860 - MGP_C3HHeJ_P0029688 Cntrob protein_coding protein_coding MGP_C3HHeJ_T0029689.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69124222 69127683 - Cntrob protein_coding retained_intron MGP_C3HHeJ_T0029690.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69131115 69132144 - MGP_C3HHeJ_P0029690 Cntrob protein_coding protein_coding MGP_C3HHeJ_T0029691.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69132745 69137840 - Cntrob protein_coding retained_intron MGP_C3HHeJ_T0029692.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69137478 69142775 - Cntrob protein_coding retained_intron MGP_C3HHeJ_T0029693.1 MGP_C3HHeJ_G0018278.1 mouse_genomes_project 11 69137894 69142188 - Cntrob protein_coding retained_intron MGP_C3HHeJ_T0012557.1 MGP_C3HHeJ_G0010661.1 mouse_genomes_project 11 77914913 77915093 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032122.1 MGP_C3HHeJ_G0018914.1 mouse_genomes_project 11 102327387 102352306 - MGP_C3HHeJ_P0032122 Zfp385c protein_coding protein_coding MGP_C3HHeJ_T0032123.1 MGP_C3HHeJ_G0018914.1 mouse_genomes_project 11 102329805 102353297 - Zfp385c protein_coding processed_transcript MGP_C3HHeJ_T0032124.1 MGP_C3HHeJ_G0018914.1 mouse_genomes_project 11 102330568 102359244 - MGP_C3HHeJ_P0032124 Zfp385c protein_coding protein_coding MGP_C3HHeJ_T0032125.1 MGP_C3HHeJ_G0018914.1 mouse_genomes_project 11 102338364 102387551 - MGP_C3HHeJ_P0032125 Zfp385c protein_coding protein_coding MGP_C3HHeJ_T0027997.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20787200 20829814 + MGP_C3HHeJ_P0027997 Xpo1 protein_coding protein_coding MGP_C3HHeJ_T0027998.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20787200 20829814 + MGP_C3HHeJ_P0027998 Xpo1 protein_coding protein_coding MGP_C3HHeJ_T0027999.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20787214 20828450 + MGP_C3HHeJ_P0027999 Xpo1 protein_coding protein_coding MGP_C3HHeJ_T0028000.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20787217 20814936 + Xpo1 protein_coding processed_transcript MGP_C3HHeJ_T0028001.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20787237 20830466 + MGP_C3HHeJ_P0028001 Xpo1 protein_coding protein_coding MGP_C3HHeJ_T0028002.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20787748 20799921 + MGP_C3HHeJ_P0028002 Xpo1 protein_coding protein_coding MGP_C3HHeJ_T0028003.1 MGP_C3HHeJ_G0017840.1 mouse_genomes_project 11 20816853 20819661 + MGP_C3HHeJ_P0028003 Xpo1 protein_coding protein_coding MGP_C3HHeJ_T0016980.1 MGP_C3HHeJ_G0014938.1 mouse_genomes_project 11 65839985 65978290 + Gm12296 processed_transcript processed_transcript MGP_C3HHeJ_T0029109.1 MGP_C3HHeJ_G0018154.1 mouse_genomes_project 11 58889286 58917402 + MGP_C3HHeJ_P0029109 Nlrp3 protein_coding protein_coding MGP_C3HHeJ_T0029110.1 MGP_C3HHeJ_G0018154.1 mouse_genomes_project 11 58890404 58917405 + MGP_C3HHeJ_P0029110 Nlrp3 protein_coding protein_coding MGP_C3HHeJ_T0029111.1 MGP_C3HHeJ_G0018154.1 mouse_genomes_project 11 58890474 58895781 + MGP_C3HHeJ_P0029111 Nlrp3 protein_coding protein_coding MGP_C3HHeJ_T0009599.1 MGP_C3HHeJ_G0007732.1 mouse_genomes_project 11 58678844 58678940 - Gm24756 miRNA miRNA MGP_C3HHeJ_T0030813.1 MGP_C3HHeJ_G0018547.1 mouse_genomes_project 11 79362082 79498991 - MGP_C3HHeJ_P0030813 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030814.1 MGP_C3HHeJ_G0018547.1 mouse_genomes_project 11 79362082 79498991 - MGP_C3HHeJ_P0030814 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030815.1 MGP_C3HHeJ_G0018547.1 mouse_genomes_project 11 79362091 79499149 - MGP_C3HHeJ_P0030815 protein_coding protein_coding MGP_C3HHeJ_T0030816.1 MGP_C3HHeJ_G0018547.1 mouse_genomes_project 11 79375332 79499149 - MGP_C3HHeJ_P0030816 protein_coding protein_coding MGP_C3HHeJ_T0030817.1 MGP_C3HHeJ_G0018547.1 mouse_genomes_project 11 79393718 79409748 - MGP_C3HHeJ_P0030817 protein_coding protein_coding MGP_C3HHeJ_T0030818.1 MGP_C3HHeJ_G0018547.1 mouse_genomes_project 11 79393981 79407500 - MGP_C3HHeJ_P0030818 protein_coding protein_coding MGP_C3HHeJ_T0032142.1 MGP_C3HHeJ_G0018919.1 mouse_genomes_project 11 102435504 102456119 - MGP_C3HHeJ_P0032142 Kcnh4 protein_coding protein_coding MGP_C3HHeJ_T0032143.1 MGP_C3HHeJ_G0018919.1 mouse_genomes_project 11 102435510 102456321 - MGP_C3HHeJ_P0032143 Kcnh4 protein_coding protein_coding MGP_C3HHeJ_T0009690.1 MGP_C3HHeJ_G0007823.1 mouse_genomes_project 11 123174379 123174433 - Mir6935 miRNA miRNA MGP_C3HHeJ_T0027548.1 MGP_C3HHeJ_G0017735.1 mouse_genomes_project 11 1156754 1171733 + MGP_C3HHeJ_P0027548 Lif protein_coding protein_coding MGP_C3HHeJ_T0027549.1 MGP_C3HHeJ_G0017735.1 mouse_genomes_project 11 1166014 1167468 + Lif protein_coding processed_transcript MGP_C3HHeJ_T0027550.1 MGP_C3HHeJ_G0017735.1 mouse_genomes_project 11 1166313 1171733 + MGP_C3HHeJ_P0027550 Lif protein_coding protein_coding MGP_C3HHeJ_T0032146.1 MGP_C3HHeJ_G0018921.1 mouse_genomes_project 11 102463187 102468176 - MGP_C3HHeJ_P0032146 Ghdc protein_coding protein_coding MGP_C3HHeJ_T0032147.1 MGP_C3HHeJ_G0018921.1 mouse_genomes_project 11 102463966 102465932 - Ghdc protein_coding processed_transcript MGP_C3HHeJ_T0032148.1 MGP_C3HHeJ_G0018921.1 mouse_genomes_project 11 102466910 102468161 - MGP_C3HHeJ_P0032148 Ghdc protein_coding protein_coding MGP_C3HHeJ_T0031873.1 MGP_C3HHeJ_G0018817.1 mouse_genomes_project 11 99944735 100033132 - MGP_C3HHeJ_P0031873 Ikzf3 protein_coding protein_coding MGP_C3HHeJ_T0031874.1 MGP_C3HHeJ_G0018817.1 mouse_genomes_project 11 99947091 99957846 - Ikzf3 protein_coding processed_transcript MGP_C3HHeJ_T0031875.1 MGP_C3HHeJ_G0018817.1 mouse_genomes_project 11 99964682 99970321 - Ikzf3 protein_coding processed_transcript MGP_C3HHeJ_T0031876.1 MGP_C3HHeJ_G0018817.1 mouse_genomes_project 11 99996309 100033363 - Ikzf3 protein_coding retained_intron MGP_C3HHeJ_T0029171.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59617495 59752279 - MGP_C3HHeJ_P0029171 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029172.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59617496 59629969 - Tom1l2 protein_coding processed_transcript MGP_C3HHeJ_T0029173.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59617496 59752279 - MGP_C3HHeJ_P0029173 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029174.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59617496 59752279 - MGP_C3HHeJ_P0029174 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029175.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59617496 59752279 - MGP_C3HHeJ_P0029175 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029176.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59620382 59622127 - Tom1l2 protein_coding processed_transcript MGP_C3HHeJ_T0029177.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59620681 59637965 - MGP_C3HHeJ_P0029177 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029178.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59620681 59637457 - MGP_C3HHeJ_P0029178 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029179.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59632854 59752279 - MGP_C3HHeJ_P0029179 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029180.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59633221 59752279 - MGP_C3HHeJ_P0029180 Tom1l2 protein_coding protein_coding MGP_C3HHeJ_T0029181.1 MGP_C3HHeJ_G0018167.1 mouse_genomes_project 11 59645789 59752279 - Tom1l2 protein_coding processed_transcript MGP_C3HHeJ_T0028082.1 MGP_C3HHeJ_G0017857.1 mouse_genomes_project 11 26893952 26927252 + Pnpt1 protein_coding processed_transcript MGP_C3HHeJ_T0028083.1 MGP_C3HHeJ_G0017857.1 mouse_genomes_project 11 26893956 26898728 + Pnpt1 protein_coding processed_transcript MGP_C3HHeJ_T0028084.1 MGP_C3HHeJ_G0017857.1 mouse_genomes_project 11 26893956 26927400 + MGP_C3HHeJ_P0028084 Pnpt1 protein_coding protein_coding MGP_C3HHeJ_T0028085.1 MGP_C3HHeJ_G0017857.1 mouse_genomes_project 11 26894036 26927055 + MGP_C3HHeJ_P0028085 Pnpt1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028086.1 MGP_C3HHeJ_G0017857.1 mouse_genomes_project 11 26901457 26908675 + Pnpt1 protein_coding processed_transcript MGP_C3HHeJ_T0098810.1 MGP_C3HHeJ_G0037004.1 mouse_genomes_project 11 96187073 96187198 + Gm22456 snRNA snRNA MGP_C3HHeJ_T0006195.1 MGP_C3HHeJ_G0005167.1 mouse_genomes_project 11 71605773 71617167 - Gm12324 lincRNA lincRNA MGP_C3HHeJ_T0098823.1 MGP_C3HHeJ_G0037017.1 mouse_genomes_project 11 108303965 108304073 + Gm23645 snRNA snRNA MGP_C3HHeJ_T0028568.1 MGP_C3HHeJ_G0017990.1 mouse_genomes_project 11 48672034 48746306 + MGP_C3HHeJ_P0028568 Rasgef1c protein_coding protein_coding MGP_C3HHeJ_T0028569.1 MGP_C3HHeJ_G0017990.1 mouse_genomes_project 11 48728550 48741836 + Rasgef1c protein_coding processed_transcript MGP_C3HHeJ_T0031525.1 MGP_C3HHeJ_G0018729.1 mouse_genomes_project 11 96280388 96299086 + MGP_C3HHeJ_P0031525 Samd14 protein_coding protein_coding MGP_C3HHeJ_T0031526.1 MGP_C3HHeJ_G0018729.1 mouse_genomes_project 11 96280391 96293596 + Samd14 protein_coding processed_transcript MGP_C3HHeJ_T0031527.1 MGP_C3HHeJ_G0018729.1 mouse_genomes_project 11 96281437 96292053 + MGP_C3HHeJ_P0031527 Samd14 protein_coding protein_coding MGP_C3HHeJ_T0028019.1 MGP_C3HHeJ_G0017843.1 mouse_genomes_project 11 21063811 21067501 - MGP_C3HHeJ_P0028019 1700093K21Rik protein_coding protein_coding MGP_C3HHeJ_T0028020.1 MGP_C3HHeJ_G0017843.1 mouse_genomes_project 11 21063811 21066782 - MGP_C3HHeJ_P0028020 1700093K21Rik protein_coding protein_coding MGP_C3HHeJ_T0028021.1 MGP_C3HHeJ_G0017843.1 mouse_genomes_project 11 21066346 21067501 - MGP_C3HHeJ_P0028021 1700093K21Rik protein_coding protein_coding MGP_C3HHeJ_T0028022.1 MGP_C3HHeJ_G0017843.1 mouse_genomes_project 11 21066375 21068717 - MGP_C3HHeJ_P0028022 1700093K21Rik protein_coding protein_coding MGP_C3HHeJ_T0006267.1 MGP_C3HHeJ_G0005217.1 mouse_genomes_project 11 109641201 109657296 - C330019F10Rik lincRNA lincRNA MGP_C3HHeJ_T0009661.1 MGP_C3HHeJ_G0007794.1 mouse_genomes_project 11 102174499 102174569 - Mir7116 miRNA miRNA MGP_C3HHeJ_T0011208.1 MGP_C3HHeJ_G0009341.1 mouse_genomes_project 11 59485690 59485817 + Gm27511 misc_RNA misc_RNA MGP_C3HHeJ_T0033249.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118409219 118417269 + MGP_C3HHeJ_P0033249 Tsen54 protein_coding protein_coding MGP_C3HHeJ_T0033250.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118409219 118417269 + MGP_C3HHeJ_P0033250 Tsen54 protein_coding protein_coding MGP_C3HHeJ_T0033251.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118409241 118410041 + Tsen54 protein_coding retained_intron MGP_C3HHeJ_T0033252.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118409266 118414705 + Tsen54 protein_coding retained_intron MGP_C3HHeJ_T0033253.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118409300 118414684 + Tsen54 protein_coding retained_intron MGP_C3HHeJ_T0033254.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118410193 118415876 + MGP_C3HHeJ_P0033254 Tsen54 protein_coding protein_coding MGP_C3HHeJ_T0033255.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118414886 118417264 + MGP_C3HHeJ_P0033255 Tsen54 protein_coding protein_coding MGP_C3HHeJ_T0033256.1 MGP_C3HHeJ_G0019150.1 mouse_genomes_project 11 118415022 118416447 + MGP_C3HHeJ_P0033256 Tsen54 protein_coding protein_coding MGP_C3HHeJ_T0032091.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102172501 102223816 - MGP_C3HHeJ_P0032091 Acly protein_coding protein_coding MGP_C3HHeJ_T0032092.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102172504 102223816 - MGP_C3HHeJ_P0032092 Acly protein_coding protein_coding MGP_C3HHeJ_T0032093.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102172506 102219415 - MGP_C3HHeJ_P0032093 Acly protein_coding protein_coding MGP_C3HHeJ_T0032094.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102173374 102175600 - Acly protein_coding processed_transcript MGP_C3HHeJ_T0032095.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102178343 102190282 - Acly protein_coding processed_transcript MGP_C3HHeJ_T0032096.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102194057 102194908 - Acly protein_coding processed_transcript MGP_C3HHeJ_T0032097.1 MGP_C3HHeJ_G0018909.1 mouse_genomes_project 11 102196388 102223685 - MGP_C3HHeJ_P0032097 Acly protein_coding protein_coding MGP_C3HHeJ_T0029568.1 MGP_C3HHeJ_G0018254.1 mouse_genomes_project 11 68275765 68327451 + MGP_C3HHeJ_P0029568 Pik3r6 protein_coding protein_coding MGP_C3HHeJ_T0029569.1 MGP_C3HHeJ_G0018254.1 mouse_genomes_project 11 68275765 68327451 + MGP_C3HHeJ_P0029569 Pik3r6 protein_coding protein_coding MGP_C3HHeJ_T0029570.1 MGP_C3HHeJ_G0018254.1 mouse_genomes_project 11 68275837 68327451 + Pik3r6 protein_coding processed_transcript MGP_C3HHeJ_T0029571.1 MGP_C3HHeJ_G0018254.1 mouse_genomes_project 11 68309761 68319145 + Pik3r6 protein_coding processed_transcript MGP_C3HHeJ_T0029572.1 MGP_C3HHeJ_G0018254.1 mouse_genomes_project 11 68326816 68327449 + Pik3r6 protein_coding processed_transcript MGP_C3HHeJ_T0098821.1 MGP_C3HHeJ_G0037015.1 mouse_genomes_project 11 107090929 107091034 + Gm25362 snRNA snRNA MGP_C3HHeJ_T0009660.1 MGP_C3HHeJ_G0007793.1 mouse_genomes_project 11 102137885 102137966 - Gm27374 miRNA miRNA MGP_C3HHeJ_T0031856.1 MGP_C3HHeJ_G0018812.1 mouse_genomes_project 11 99861702 99863440 + MGP_C3HHeJ_P0031856 Pnmt protein_coding protein_coding MGP_C3HHeJ_T0031857.1 MGP_C3HHeJ_G0018812.1 mouse_genomes_project 11 99861964 99862735 + Pnmt protein_coding processed_transcript MGP_C3HHeJ_T0012509.1 MGP_C3HHeJ_G0010613.1 mouse_genomes_project 11 59851575 59852017 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033001.1 MGP_C3HHeJ_G0019098.1 mouse_genomes_project 11 113361382 113374058 + MGP_C3HHeJ_P0033001 Kcnj2 protein_coding protein_coding MGP_C3HHeJ_T0030770.1 MGP_C3HHeJ_G0018534.1 mouse_genomes_project 11 78793307 78819160 - MGP_C3HHeJ_P0030770 Sarm1 protein_coding protein_coding MGP_C3HHeJ_T0030771.1 MGP_C3HHeJ_G0018534.1 mouse_genomes_project 11 78794190 78804771 - Sarm1 protein_coding retained_intron MGP_C3HHeJ_T0030772.1 MGP_C3HHeJ_G0018534.1 mouse_genomes_project 11 78794268 78819450 - MGP_C3HHeJ_P0030772 Sarm1 protein_coding protein_coding MGP_C3HHeJ_T0030773.1 MGP_C3HHeJ_G0018534.1 mouse_genomes_project 11 78803806 78808272 - Sarm1 protein_coding retained_intron MGP_C3HHeJ_T0030774.1 MGP_C3HHeJ_G0018534.1 mouse_genomes_project 11 78811931 78819382 - Sarm1 protein_coding processed_transcript MGP_C3HHeJ_T0100019.1 MGP_C3HHeJ_G0038213.1 mouse_genomes_project 11 62179436 62179508 + Snord65 snoRNA snoRNA MGP_C3HHeJ_T0012570.1 MGP_C3HHeJ_G0010674.1 mouse_genomes_project 11 81515294 81517272 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009659.1 MGP_C3HHeJ_G0007792.1 mouse_genomes_project 11 99726355 99726412 + Mir5119 miRNA miRNA MGP_C3HHeJ_T0011706.1 MGP_C3HHeJ_G0009835.1 mouse_genomes_project 11 74329639 74330611 + MGP_C3HHeJ_P0011706 Olfr404-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0003302.1 MGP_C3HHeJ_G0003043.1 mouse_genomes_project 11 123903087 123929075 + Gm11775 antisense antisense MGP_C3HHeJ_T0012393.1 MGP_C3HHeJ_G0010497.1 mouse_genomes_project 11 17106705 17107823 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098804.1 MGP_C3HHeJ_G0036998.1 mouse_genomes_project 11 88184115 88184302 + Gm22068 snRNA snRNA MGP_C3HHeJ_T0032001.1 MGP_C3HHeJ_G0018857.1 mouse_genomes_project 11 101145009 101145602 - MGP_C3HHeJ_P0032001 Krtap1-4 protein_coding protein_coding MGP_C3HHeJ_T0006297.1 MGP_C3HHeJ_G0005239.1 mouse_genomes_project 11 120209525 120218021 + Gm11734 lincRNA lincRNA MGP_C3HHeJ_T0100011.1 MGP_C3HHeJ_G0038205.1 mouse_genomes_project 11 47357174 47357242 + Snord95 snoRNA snoRNA MGP_C3HHeJ_T0012590.1 MGP_C3HHeJ_G0010694.1 mouse_genomes_project 11 91491451 91491991 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006157.1 MGP_C3HHeJ_G0005135.1 mouse_genomes_project 11 45078151 45079244 - lincRNA lincRNA MGP_C3HHeJ_T0012520.1 MGP_C3HHeJ_G0010624.1 mouse_genomes_project 11 62278705 62279004 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029537.1 MGP_C3HHeJ_G0018246.1 mouse_genomes_project 11 67436268 67444296 + MGP_C3HHeJ_P0029537 Rcvrn protein_coding protein_coding MGP_C3HHeJ_T0029104.1 MGP_C3HHeJ_G0018153.1 mouse_genomes_project 11 58829223 58852964 - MGP_C3HHeJ_P0029104 Zkscan17 protein_coding protein_coding MGP_C3HHeJ_T0029105.1 MGP_C3HHeJ_G0018153.1 mouse_genomes_project 11 58846306 58853017 - Zkscan17 protein_coding processed_transcript MGP_C3HHeJ_T0029106.1 MGP_C3HHeJ_G0018153.1 mouse_genomes_project 11 58850949 58874316 - Zkscan17 protein_coding processed_transcript MGP_C3HHeJ_T0029107.1 MGP_C3HHeJ_G0018153.1 mouse_genomes_project 11 58850955 58853017 - Zkscan17 protein_coding processed_transcript MGP_C3HHeJ_T0029108.1 MGP_C3HHeJ_G0018153.1 mouse_genomes_project 11 58873136 58874436 - Zkscan17 protein_coding processed_transcript MGP_C3HHeJ_T0017069.1 MGP_C3HHeJ_G0014986.1 mouse_genomes_project 11 123050140 123051924 - 2900052L18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100042.1 MGP_C3HHeJ_G0038236.1 mouse_genomes_project 11 97358807 97359022 + Gm24949 snoRNA snoRNA MGP_C3HHeJ_T0029088.1 MGP_C3HHeJ_G0018148.1 mouse_genomes_project 11 58649135 58675515 + MGP_C3HHeJ_P0029088 Wnt9a protein_coding protein_coding MGP_C3HHeJ_T0029089.1 MGP_C3HHeJ_G0018148.1 mouse_genomes_project 11 58649137 58675515 + MGP_C3HHeJ_P0029089 Wnt9a protein_coding protein_coding MGP_C3HHeJ_T0098754.1 MGP_C3HHeJ_G0036948.1 mouse_genomes_project 11 4977276 4977338 - Gm27393 snRNA snRNA MGP_C3HHeJ_T0031511.1 MGP_C3HHeJ_G0018724.1 mouse_genomes_project 11 95998445 96003159 - MGP_C3HHeJ_P0031511 Tmem92 protein_coding protein_coding MGP_C3HHeJ_T0098788.1 MGP_C3HHeJ_G0036982.1 mouse_genomes_project 11 73833016 73833123 + Gm22381 snRNA snRNA MGP_C3HHeJ_T0031252.1 MGP_C3HHeJ_G0018661.1 mouse_genomes_project 11 88382284 88408007 + MGP_C3HHeJ_P0031252 Mtmr4 protein_coding protein_coding MGP_C3HHeJ_T0031253.1 MGP_C3HHeJ_G0018661.1 mouse_genomes_project 11 88382341 88408007 + MGP_C3HHeJ_P0031253 Mtmr4 protein_coding protein_coding MGP_C3HHeJ_T0031254.1 MGP_C3HHeJ_G0018661.1 mouse_genomes_project 11 88382348 88389056 + MGP_C3HHeJ_P0031254 Mtmr4 protein_coding protein_coding MGP_C3HHeJ_T0031255.1 MGP_C3HHeJ_G0018661.1 mouse_genomes_project 11 88382586 88387842 + MGP_C3HHeJ_P0031255 Mtmr4 protein_coding protein_coding MGP_C3HHeJ_T0031256.1 MGP_C3HHeJ_G0018661.1 mouse_genomes_project 11 88383019 88406877 + MGP_C3HHeJ_P0031256 Mtmr4 protein_coding protein_coding MGP_C3HHeJ_T0031257.1 MGP_C3HHeJ_G0018661.1 mouse_genomes_project 11 88385772 88391188 + MGP_C3HHeJ_P0031257 Mtmr4 protein_coding protein_coding MGP_C3HHeJ_T0032571.1 MGP_C3HHeJ_G0019004.1 mouse_genomes_project 11 104937667 104952303 + Nmt1 protein_coding processed_transcript MGP_C3HHeJ_T0032572.1 MGP_C3HHeJ_G0019004.1 mouse_genomes_project 11 104937823 104979518 + MGP_C3HHeJ_P0032572 Nmt1 protein_coding protein_coding MGP_C3HHeJ_T0032573.1 MGP_C3HHeJ_G0019004.1 mouse_genomes_project 11 104938062 104965877 + Nmt1 protein_coding processed_transcript MGP_C3HHeJ_T0033382.1 MGP_C3HHeJ_G0019173.1 mouse_genomes_project 11 118956056 118960525 - MGP_C3HHeJ_P0033382 Foxj1 protein_coding protein_coding MGP_C3HHeJ_T0006299.1 MGP_C3HHeJ_G0005241.1 mouse_genomes_project 11 121844517 121848812 + Gm26508 lincRNA lincRNA MGP_C3HHeJ_T0003257.1 MGP_C3HHeJ_G0003007.1 mouse_genomes_project 11 109507393 109509382 + Gm11712 antisense antisense MGP_C3HHeJ_T0030791.1 MGP_C3HHeJ_G0018539.1 mouse_genomes_project 11 78846386 78861339 - MGP_C3HHeJ_P0030791 Tnfaip1 protein_coding protein_coding MGP_C3HHeJ_T0030792.1 MGP_C3HHeJ_G0018539.1 mouse_genomes_project 11 78846386 78861400 - MGP_C3HHeJ_P0030792 Tnfaip1 protein_coding protein_coding MGP_C3HHeJ_T0033400.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119108743 119128775 - Prpsap1 protein_coding processed_transcript MGP_C3HHeJ_T0033401.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119108743 119128809 - MGP_C3HHeJ_P0033401 Prpsap1 protein_coding protein_coding MGP_C3HHeJ_T0033402.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119109197 119116235 - Prpsap1 protein_coding processed_transcript MGP_C3HHeJ_T0033403.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119109274 119111142 - Prpsap1 protein_coding processed_transcript MGP_C3HHeJ_T0033404.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119109298 119115654 - Prpsap1 protein_coding processed_transcript MGP_C3HHeJ_T0033405.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119115974 119133234 - MGP_C3HHeJ_P0033405 Prpsap1 protein_coding protein_coding MGP_C3HHeJ_T0033406.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119116206 119128750 - Prpsap1 protein_coding processed_transcript MGP_C3HHeJ_T0033407.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119116448 119128796 - MGP_C3HHeJ_P0033407 Prpsap1 protein_coding protein_coding MGP_C3HHeJ_T0033408.1 MGP_C3HHeJ_G0019178.1 mouse_genomes_project 11 119123957 119128788 - Prpsap1 protein_coding processed_transcript MGP_C3HHeJ_T0006215.1 MGP_C3HHeJ_G0005181.1 mouse_genomes_project 11 82472369 82475733 + Gm11419 lincRNA lincRNA MGP_C3HHeJ_T0031413.1 MGP_C3HHeJ_G0018702.1 mouse_genomes_project 11 95125397 95143687 - MGP_C3HHeJ_P0031413 Gm20390 protein_coding protein_coding MGP_C3HHeJ_T0029941.1 MGP_C3HHeJ_G0018335.1 mouse_genomes_project 11 70027007 70030972 + protein_coding processed_transcript MGP_C3HHeJ_T0012587.1 MGP_C3HHeJ_G0010691.1 mouse_genomes_project 11 88781770 88782182 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000817.1 MGP_C3HHeJ_G0000758.1 mouse_genomes_project 11 43644831 43645134 - TEC TEC MGP_C3HHeJ_T0012414.1 MGP_C3HHeJ_G0010518.1 mouse_genomes_project 11 20286434 20286871 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012519.1 MGP_C3HHeJ_G0010623.1 mouse_genomes_project 11 61883464 61883765 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033578.1 MGP_C3HHeJ_G0019214.1 mouse_genomes_project 11 121078765 121088682 - MGP_C3HHeJ_P0033578 BC100451 protein_coding protein_coding MGP_C3HHeJ_T0033579.1 MGP_C3HHeJ_G0019214.1 mouse_genomes_project 11 121078820 121080422 - MGP_C3HHeJ_P0033579 BC100451 protein_coding protein_coding MGP_C3HHeJ_T0009655.1 MGP_C3HHeJ_G0007788.1 mouse_genomes_project 11 99176387 99176526 + Mir8102 miRNA miRNA MGP_C3HHeJ_T0027971.1 MGP_C3HHeJ_G0017834.1 mouse_genomes_project 11 20338991 20495902 - MGP_C3HHeJ_P0027971 Gm28048 protein_coding protein_coding MGP_C3HHeJ_T0030191.1 MGP_C3HHeJ_G0018384.1 mouse_genomes_project 11 72190734 72193623 - MGP_C3HHeJ_P0030191 Gm43951 protein_coding protein_coding MGP_C3HHeJ_T0006106.1 MGP_C3HHeJ_G0005091.1 mouse_genomes_project 11 17553880 17554658 - Gm12031 lincRNA lincRNA MGP_C3HHeJ_T0011204.1 MGP_C3HHeJ_G0009337.1 mouse_genomes_project 11 49296847 49297123 - Gm23824 misc_RNA misc_RNA MGP_C3HHeJ_T0027959.1 MGP_C3HHeJ_G0017830.1 mouse_genomes_project 11 19472788 19479619 - MGP_C3HHeJ_P0027959 Otx1 protein_coding protein_coding MGP_C3HHeJ_T0027960.1 MGP_C3HHeJ_G0017830.1 mouse_genomes_project 11 19472793 19479714 - Otx1 protein_coding retained_intron MGP_C3HHeJ_T0027961.1 MGP_C3HHeJ_G0017830.1 mouse_genomes_project 11 19474860 19480910 - MGP_C3HHeJ_P0027961 Otx1 protein_coding protein_coding MGP_C3HHeJ_T0012548.1 MGP_C3HHeJ_G0010652.1 mouse_genomes_project 11 74161531 74162153 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003212.1 MGP_C3HHeJ_G0002969.1 mouse_genomes_project 11 98545906 98546592 + Gm11583 antisense antisense MGP_C3HHeJ_T0003276.1 MGP_C3HHeJ_G0003022.1 mouse_genomes_project 11 118551237 118556893 - Sap30bpos antisense antisense MGP_C3HHeJ_T0012379.1 MGP_C3HHeJ_G0010483.1 mouse_genomes_project 11 12376526 12377626 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012421.1 MGP_C3HHeJ_G0010525.1 mouse_genomes_project 11 24691868 24692087 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101661.1 MGP_C3HHeJ_G0039627.1 mouse_genomes_project 11 101525970 101526173 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0032046.1 MGP_C3HHeJ_G0018895.1 mouse_genomes_project 11 101841829 101849486 - MGP_C3HHeJ_P0032046 Krt9 protein_coding protein_coding MGP_C3HHeJ_T0003300.1 MGP_C3HHeJ_G0003041.1 mouse_genomes_project 11 123691486 123694702 + Gm11773 antisense antisense MGP_C3HHeJ_T0006146.1 MGP_C3HHeJ_G0005125.1 mouse_genomes_project 11 38779785 38780745 - 3110004A20Rik lincRNA lincRNA MGP_C3HHeJ_T0012630.1 MGP_C3HHeJ_G0010734.1 mouse_genomes_project 11 107180312 107182157 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030965.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83411240 83418954 - MGP_C3HHeJ_P0030965 Nle1 protein_coding protein_coding MGP_C3HHeJ_T0030966.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83411244 83412295 - Nle1 protein_coding retained_intron MGP_C3HHeJ_T0030967.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83411252 83414826 - MGP_C3HHeJ_P0030967 Nle1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030968.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83412217 83414805 - Nle1 protein_coding retained_intron MGP_C3HHeJ_T0030969.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83414626 83415183 - Nle1 protein_coding retained_intron MGP_C3HHeJ_T0030970.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83415338 83418230 - MGP_C3HHeJ_P0030970 Nle1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030971.1 MGP_C3HHeJ_G0018588.1 mouse_genomes_project 11 83415468 83418885 - Nle1 protein_coding retained_intron MGP_C3HHeJ_T0098346.1 MGP_C3HHeJ_G0036557.1 mouse_genomes_project 11 68034762 68036084 - Gm12305 sense_intronic sense_intronic MGP_C3HHeJ_T0030406.1 MGP_C3HHeJ_G0018457.1 mouse_genomes_project 11 75305142 75310087 - MGP_C3HHeJ_P0030406 Hic1 protein_coding protein_coding MGP_C3HHeJ_T0030407.1 MGP_C3HHeJ_G0018457.1 mouse_genomes_project 11 75307730 75308724 - Hic1 protein_coding processed_transcript MGP_C3HHeJ_T0030826.1 MGP_C3HHeJ_G0018549.1 mouse_genomes_project 11 79663757 79665773 - MGP_C3HHeJ_P0030826 Gm9964 protein_coding protein_coding MGP_C3HHeJ_T0009563.1 MGP_C3HHeJ_G0007696.1 mouse_genomes_project 11 1031297 1031380 + Mir3060 miRNA miRNA MGP_C3HHeJ_T0033294.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118581511 118618070 + MGP_C3HHeJ_P0033294 Itgb4 protein_coding protein_coding MGP_C3HHeJ_T0033295.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118581527 118618069 + MGP_C3HHeJ_P0033295 Itgb4 protein_coding protein_coding MGP_C3HHeJ_T0033296.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118581527 118618069 + MGP_C3HHeJ_P0033296 Itgb4 protein_coding protein_coding MGP_C3HHeJ_T0033297.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118581645 118605260 + Itgb4 protein_coding processed_transcript MGP_C3HHeJ_T0033298.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118581781 118618070 + MGP_C3HHeJ_P0033298 Itgb4 protein_coding protein_coding MGP_C3HHeJ_T0033299.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118584588 118618070 + MGP_C3HHeJ_P0033299 Itgb4 protein_coding protein_coding MGP_C3HHeJ_T0033300.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118584588 118618070 + MGP_C3HHeJ_P0033300 Itgb4 protein_coding protein_coding MGP_C3HHeJ_T0033301.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118596684 118597790 + Itgb4 protein_coding processed_transcript MGP_C3HHeJ_T0033302.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118597691 118598713 + Itgb4 protein_coding processed_transcript MGP_C3HHeJ_T0033303.1 MGP_C3HHeJ_G0019157.1 mouse_genomes_project 11 118603431 118604830 + Itgb4 protein_coding processed_transcript MGP_C3HHeJ_T0028942.1 MGP_C3HHeJ_G0018083.1 mouse_genomes_project 11 54616074 54634382 + protein_coding processed_transcript MGP_C3HHeJ_T0028943.1 MGP_C3HHeJ_G0018083.1 mouse_genomes_project 11 54616097 54648431 + MGP_C3HHeJ_P0028943 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034001.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124327187 124514683 + MGP_C3HHeJ_P0034001 Tbcd protein_coding unknown_likely_coding MGP_C3HHeJ_T0034002.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124344138 124514902 + MGP_C3HHeJ_P0034002 Tbcd protein_coding protein_coding MGP_C3HHeJ_T0034003.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124381142 124389769 + MGP_C3HHeJ_P0034003 Tbcd protein_coding protein_coding MGP_C3HHeJ_T0034004.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124392753 124474729 + MGP_C3HHeJ_P0034004 Tbcd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034006.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124441529 124488984 + Tbcd protein_coding processed_transcript MGP_C3HHeJ_T0034007.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124447306 124488961 + Tbcd protein_coding retained_intron MGP_C3HHeJ_T0034008.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124496893 124514901 + Tbcd protein_coding retained_intron MGP_C3HHeJ_T0034009.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124500196 124514901 + Tbcd protein_coding processed_transcript MGP_C3HHeJ_T0034010.1 MGP_C3HHeJ_G0019298.1 mouse_genomes_project 11 124500282 124514901 + Tbcd protein_coding processed_transcript MGP_C3HHeJ_T0017015.1 MGP_C3HHeJ_G0014957.1 mouse_genomes_project 11 97794556 97810705 - Gm11529 processed_transcript processed_transcript MGP_C3HHeJ_T0031621.1 MGP_C3HHeJ_G0018757.1 mouse_genomes_project 11 97623297 97626734 + MGP_C3HHeJ_P0031621 Hoxb8 protein_coding protein_coding MGP_C3HHeJ_T0031622.1 MGP_C3HHeJ_G0018757.1 mouse_genomes_project 11 97623948 97625734 + MGP_C3HHeJ_P0031622 Hoxb8 protein_coding protein_coding MGP_C3HHeJ_T0031623.1 MGP_C3HHeJ_G0018757.1 mouse_genomes_project 11 97624117 97626112 + MGP_C3HHeJ_P0031623 Hoxb8 protein_coding protein_coding MGP_C3HHeJ_T0027597.1 MGP_C3HHeJ_G0017746.1 mouse_genomes_project 11 1873331 1882480 - MGP_C3HHeJ_P0027597 Nefh protein_coding protein_coding MGP_C3HHeJ_T0006114.1 MGP_C3HHeJ_G0005099.1 mouse_genomes_project 11 20675357 20691718 + 1700061J23Rik lincRNA lincRNA MGP_C3HHeJ_T0031689.1 MGP_C3HHeJ_G0018772.1 mouse_genomes_project 11 98311767 98317717 - Pnpo protein_coding processed_transcript MGP_C3HHeJ_T0031690.1 MGP_C3HHeJ_G0018772.1 mouse_genomes_project 11 98311769 98317806 - MGP_C3HHeJ_P0031690 Pnpo protein_coding protein_coding MGP_C3HHeJ_T0016998.1 MGP_C3HHeJ_G0014950.1 mouse_genomes_project 11 83873866 83876770 + AA465934 processed_transcript antisense MGP_C3HHeJ_T0016999.1 MGP_C3HHeJ_G0014950.1 mouse_genomes_project 11 83873887 83876771 + AA465934 processed_transcript antisense MGP_C3HHeJ_T0017000.1 MGP_C3HHeJ_G0014950.1 mouse_genomes_project 11 83873895 83874446 + AA465934 processed_transcript retained_intron MGP_C3HHeJ_T0017001.1 MGP_C3HHeJ_G0014950.1 mouse_genomes_project 11 83873909 83876768 + AA465934 processed_transcript antisense MGP_C3HHeJ_T0017002.1 MGP_C3HHeJ_G0014950.1 mouse_genomes_project 11 83873910 83876769 + AA465934 processed_transcript retained_intron MGP_C3HHeJ_T0003084.1 MGP_C3HHeJ_G0002866.1 mouse_genomes_project 11 48914902 48915825 - Gm12195 antisense antisense MGP_C3HHeJ_T0030279.1 MGP_C3HHeJ_G0018409.1 mouse_genomes_project 11 73215104 73231389 - MGP_C3HHeJ_P0030279 Ctns protein_coding protein_coding MGP_C3HHeJ_T0030280.1 MGP_C3HHeJ_G0018409.1 mouse_genomes_project 11 73215105 73231389 - MGP_C3HHeJ_P0030280 Ctns protein_coding protein_coding MGP_C3HHeJ_T0030281.1 MGP_C3HHeJ_G0018409.1 mouse_genomes_project 11 73217860 73220315 - Ctns protein_coding retained_intron MGP_C3HHeJ_T0030282.1 MGP_C3HHeJ_G0018409.1 mouse_genomes_project 11 73222820 73231368 - Ctns protein_coding retained_intron MGP_C3HHeJ_T0030283.1 MGP_C3HHeJ_G0018409.1 mouse_genomes_project 11 73223222 73231342 - Ctns protein_coding processed_transcript MGP_C3HHeJ_T0012472.1 MGP_C3HHeJ_G0010576.1 mouse_genomes_project 11 47281342 47282319 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017027.1 MGP_C3HHeJ_G0014963.1 mouse_genomes_project 11 99061417 99079388 - Gm11613 processed_transcript processed_transcript MGP_C3HHeJ_T0003078.1 MGP_C3HHeJ_G0002860.1 mouse_genomes_project 11 41629050 41680329 - Gm12147 antisense antisense MGP_C3HHeJ_T0030293.1 MGP_C3HHeJ_G0018413.1 mouse_genomes_project 11 73342236 73367788 - MGP_C3HHeJ_P0030293 Aspa protein_coding protein_coding MGP_C3HHeJ_T0030294.1 MGP_C3HHeJ_G0018413.1 mouse_genomes_project 11 73342236 73372713 - MGP_C3HHeJ_P0030294 Aspa protein_coding protein_coding MGP_C3HHeJ_T0030295.1 MGP_C3HHeJ_G0018413.1 mouse_genomes_project 11 73350683 73369613 - MGP_C3HHeJ_P0030295 Aspa protein_coding protein_coding MGP_C3HHeJ_T0030296.1 MGP_C3HHeJ_G0018413.1 mouse_genomes_project 11 73359168 73367491 - Aspa protein_coding retained_intron MGP_C3HHeJ_T0030297.1 MGP_C3HHeJ_G0018413.1 mouse_genomes_project 11 73363000 73369943 - MGP_C3HHeJ_P0030297 Aspa protein_coding protein_coding MGP_C3HHeJ_T0030298.1 MGP_C3HHeJ_G0018413.1 mouse_genomes_project 11 73365385 73367768 - MGP_C3HHeJ_P0030298 Aspa protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003170.1 MGP_C3HHeJ_G0002938.1 mouse_genomes_project 11 80576210 80594856 - Adap2os antisense antisense MGP_C3HHeJ_T0027687.1 MGP_C3HHeJ_G0017765.1 mouse_genomes_project 11 2889667 2891813 - MGP_C3HHeJ_P0027687 Myl7 protein_coding protein_coding MGP_C3HHeJ_T0028540.1 MGP_C3HHeJ_G0017980.1 mouse_genomes_project 11 48153950 48154886 + MGP_C3HHeJ_P0028540 Olfr1388 protein_coding protein_coding MGP_C3HHeJ_T0006113.1 MGP_C3HHeJ_G0005098.1 mouse_genomes_project 11 20235354 20239268 + Gm12056 lincRNA lincRNA MGP_C3HHeJ_T0012632.1 MGP_C3HHeJ_G0010736.1 mouse_genomes_project 11 107909171 107910180 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031312.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 88945337 88947386 + Cuedc1 protein_coding processed_transcript MGP_C3HHeJ_T0031313.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 88946423 89054666 + MGP_C3HHeJ_P0031313 Cuedc1 protein_coding protein_coding MGP_C3HHeJ_T0031314.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 88946567 89044189 + Cuedc1 protein_coding retained_intron MGP_C3HHeJ_T0031315.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 89015444 89054666 + MGP_C3HHeJ_P0031315 Cuedc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031316.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 89041133 89042111 + Cuedc1 protein_coding retained_intron MGP_C3HHeJ_T0031317.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 89045730 89048569 + Cuedc1 protein_coding processed_transcript MGP_C3HHeJ_T0031318.1 MGP_C3HHeJ_G0018676.1 mouse_genomes_project 11 89047570 89052399 + Cuedc1 protein_coding retained_intron MGP_C3HHeJ_T0029460.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64611525 64635362 + MGP_C3HHeJ_P0029460 Elac2 protein_coding protein_coding MGP_C3HHeJ_T0029461.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64611558 64634621 + MGP_C3HHeJ_P0029461 Elac2 protein_coding protein_coding MGP_C3HHeJ_T0029462.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64611559 64613139 + Elac2 protein_coding processed_transcript MGP_C3HHeJ_T0029463.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64611561 64634893 + MGP_C3HHeJ_P0029463 Elac2 protein_coding protein_coding MGP_C3HHeJ_T0029464.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64611578 64635360 + Elac2 protein_coding processed_transcript MGP_C3HHeJ_T0029465.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64617952 64624986 + MGP_C3HHeJ_P0029465 Elac2 protein_coding protein_coding MGP_C3HHeJ_T0029466.1 MGP_C3HHeJ_G0018226.1 mouse_genomes_project 11 64633628 64635181 + Elac2 protein_coding processed_transcript MGP_C3HHeJ_T0003120.1 MGP_C3HHeJ_G0002896.1 mouse_genomes_project 11 59633094 59634215 + Gm12265 antisense antisense MGP_C3HHeJ_T0030775.1 MGP_C3HHeJ_G0018535.1 mouse_genomes_project 11 78820786 78822281 + Vtn protein_coding retained_intron MGP_C3HHeJ_T0030776.1 MGP_C3HHeJ_G0018535.1 mouse_genomes_project 11 78820815 78824020 + MGP_C3HHeJ_P0030776 Vtn protein_coding protein_coding MGP_C3HHeJ_T0030777.1 MGP_C3HHeJ_G0018535.1 mouse_genomes_project 11 78820867 78821940 + Vtn protein_coding retained_intron MGP_C3HHeJ_T0030778.1 MGP_C3HHeJ_G0018535.1 mouse_genomes_project 11 78822301 78823918 + Vtn protein_coding retained_intron MGP_C3HHeJ_T0098814.1 MGP_C3HHeJ_G0037008.1 mouse_genomes_project 11 99954101 99954235 - Gm25106 snRNA snRNA MGP_C3HHeJ_T0033548.1 MGP_C3HHeJ_G0019205.1 mouse_genomes_project 11 120559563 120568245 + MGP_C3HHeJ_P0033548 Birc5 protein_coding protein_coding MGP_C3HHeJ_T0033549.1 MGP_C3HHeJ_G0019205.1 mouse_genomes_project 11 120559631 120568256 + MGP_C3HHeJ_P0033549 Birc5 protein_coding protein_coding MGP_C3HHeJ_T0012468.1 MGP_C3HHeJ_G0010572.1 mouse_genomes_project 11 45387136 45387481 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029667.1 MGP_C3HHeJ_G0018272.1 mouse_genomes_project 11 68931635 68934171 - MGP_C3HHeJ_P0029667 9130213A22Rik protein_coding protein_coding MGP_C3HHeJ_T0100015.1 MGP_C3HHeJ_G0038209.1 mouse_genomes_project 11 57956354 57956486 + Gm22599 snoRNA snoRNA MGP_C3HHeJ_T0012408.1 MGP_C3HHeJ_G0010512.1 mouse_genomes_project 11 18949640 18950213 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006277.1 MGP_C3HHeJ_G0005226.1 mouse_genomes_project 11 115434551 115564496 - 2610035D17Rik lincRNA lincRNA MGP_C3HHeJ_T0006278.1 MGP_C3HHeJ_G0005226.1 mouse_genomes_project 11 115434551 115592709 - 2610035D17Rik lincRNA lincRNA MGP_C3HHeJ_T0006279.1 MGP_C3HHeJ_G0005226.1 mouse_genomes_project 11 115434551 115592693 - 2610035D17Rik lincRNA lincRNA MGP_C3HHeJ_T0006280.1 MGP_C3HHeJ_G0005226.1 mouse_genomes_project 11 115435173 115564496 - 2610035D17Rik lincRNA lincRNA MGP_C3HHeJ_T0032058.1 MGP_C3HHeJ_G0018902.1 mouse_genomes_project 11 102038654 102048781 - MGP_C3HHeJ_P0032058 Hap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032059.1 MGP_C3HHeJ_G0018902.1 mouse_genomes_project 11 102038660 102048321 - MGP_C3HHeJ_P0032059 Hap1 protein_coding protein_coding MGP_C3HHeJ_T0032060.1 MGP_C3HHeJ_G0018902.1 mouse_genomes_project 11 102040630 102046233 - MGP_C3HHeJ_P0032060 Hap1 protein_coding protein_coding MGP_C3HHeJ_T0032061.1 MGP_C3HHeJ_G0018902.1 mouse_genomes_project 11 102040750 102044099 - MGP_C3HHeJ_P0032061 Hap1 protein_coding protein_coding MGP_C3HHeJ_T0032062.1 MGP_C3HHeJ_G0018902.1 mouse_genomes_project 11 102044449 102047576 - MGP_C3HHeJ_P0032062 Hap1 protein_coding protein_coding MGP_C3HHeJ_T0016924.1 MGP_C3HHeJ_G0014910.1 mouse_genomes_project 11 517212 524942 - Tug1 processed_transcript antisense MGP_C3HHeJ_T0016925.1 MGP_C3HHeJ_G0014910.1 mouse_genomes_project 11 517221 524942 - Tug1 processed_transcript antisense MGP_C3HHeJ_T0016926.1 MGP_C3HHeJ_G0014910.1 mouse_genomes_project 11 517221 526227 - Tug1 processed_transcript antisense MGP_C3HHeJ_T0016927.1 MGP_C3HHeJ_G0014910.1 mouse_genomes_project 11 524267 526457 - Tug1 processed_transcript antisense MGP_C3HHeJ_T0016928.1 MGP_C3HHeJ_G0014910.1 mouse_genomes_project 11 525476 527088 - Tug1 processed_transcript TEC MGP_C3HHeJ_T0006259.1 MGP_C3HHeJ_G0005211.1 mouse_genomes_project 11 103385355 103385917 + Gm11635 lincRNA lincRNA MGP_C3HHeJ_T0006260.1 MGP_C3HHeJ_G0005211.1 mouse_genomes_project 11 103385441 103390591 + Gm11635 lincRNA lincRNA MGP_C3HHeJ_T0098000.1 MGP_C3HHeJ_G0036212.1 mouse_genomes_project 11 91139707 91139826 - n-R5s72 rRNA rRNA MGP_C3HHeJ_T0012640.1 MGP_C3HHeJ_G0010744.1 mouse_genomes_project 11 111356585 111357593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027519.1 MGP_C3HHeJ_G0017728.1 mouse_genomes_project 11 987702 1009597 - MGP_C3HHeJ_P0027519 Sec14l2 protein_coding protein_coding MGP_C3HHeJ_T0027520.1 MGP_C3HHeJ_G0017728.1 mouse_genomes_project 11 988438 1009462 - Sec14l2 protein_coding processed_transcript MGP_C3HHeJ_T0027521.1 MGP_C3HHeJ_G0017728.1 mouse_genomes_project 11 988438 999998 - Sec14l2 protein_coding processed_transcript MGP_C3HHeJ_T0027522.1 MGP_C3HHeJ_G0017728.1 mouse_genomes_project 11 994396 999748 - Sec14l2 protein_coding processed_transcript MGP_C3HHeJ_T0027523.1 MGP_C3HHeJ_G0017728.1 mouse_genomes_project 11 1001825 1014181 - Sec14l2 protein_coding processed_transcript MGP_C3HHeJ_T0027524.1 MGP_C3HHeJ_G0017728.1 mouse_genomes_project 11 1007222 1009519 - Sec14l2 protein_coding processed_transcript MGP_C3HHeJ_T0028410.1 MGP_C3HHeJ_G0017939.1 mouse_genomes_project 11 44301588 44366015 + MGP_C3HHeJ_P0028410 Clint1 protein_coding protein_coding MGP_C3HHeJ_T0028411.1 MGP_C3HHeJ_G0017939.1 mouse_genomes_project 11 44301588 44366015 + MGP_C3HHeJ_P0028411 Clint1 protein_coding protein_coding MGP_C3HHeJ_T0028412.1 MGP_C3HHeJ_G0017939.1 mouse_genomes_project 11 44338648 44366015 + Clint1 protein_coding processed_transcript MGP_C3HHeJ_T0028999.1 MGP_C3HHeJ_G0018102.1 mouse_genomes_project 11 57594294 57612280 + MGP_C3HHeJ_P0028999 Sh3bp5l protein_coding protein_coding MGP_C3HHeJ_T0029000.1 MGP_C3HHeJ_G0018102.1 mouse_genomes_project 11 57594320 57612277 + MGP_C3HHeJ_P0029000 Sh3bp5l protein_coding protein_coding MGP_C3HHeJ_T0029001.1 MGP_C3HHeJ_G0018102.1 mouse_genomes_project 11 57594613 57595080 + Sh3bp5l protein_coding processed_transcript MGP_C3HHeJ_T0029002.1 MGP_C3HHeJ_G0018102.1 mouse_genomes_project 11 57594845 57612272 + Sh3bp5l protein_coding processed_transcript MGP_C3HHeJ_T0029003.1 MGP_C3HHeJ_G0018102.1 mouse_genomes_project 11 57609862 57611502 + Sh3bp5l protein_coding processed_transcript MGP_C3HHeJ_T0032693.1 MGP_C3HHeJ_G0019031.1 mouse_genomes_project 11 107069574 107100722 + MGP_C3HHeJ_P0032693 Efcab3 protein_coding protein_coding MGP_C3HHeJ_T0032694.1 MGP_C3HHeJ_G0019031.1 mouse_genomes_project 11 107072826 107118081 + MGP_C3HHeJ_P0032694 Efcab3 protein_coding protein_coding MGP_C3HHeJ_T0032695.1 MGP_C3HHeJ_G0019031.1 mouse_genomes_project 11 107103879 107129295 + MGP_C3HHeJ_P0032695 Efcab3 protein_coding protein_coding MGP_C3HHeJ_T0032696.1 MGP_C3HHeJ_G0019031.1 mouse_genomes_project 11 107124282 107129293 + Efcab3 protein_coding processed_transcript MGP_C3HHeJ_T0029313.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61035769 61098511 - MGP_C3HHeJ_P0029313 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029314.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61035769 61098527 - MGP_C3HHeJ_P0029314 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029315.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61035769 61098527 - MGP_C3HHeJ_P0029315 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029316.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61035769 61098511 - MGP_C3HHeJ_P0029316 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029317.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61035770 61098529 - MGP_C3HHeJ_P0029317 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029318.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61035770 61098529 - MGP_C3HHeJ_P0029318 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029319.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61041687 61064885 - MGP_C3HHeJ_P0029319 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029320.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61051177 61062825 - MGP_C3HHeJ_P0029320 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029321.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61052905 61065054 - Epn2 protein_coding retained_intron MGP_C3HHeJ_T0029322.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61065017 61098500 - MGP_C3HHeJ_P0029322 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029323.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61065203 61098500 - MGP_C3HHeJ_P0029323 Epn2 protein_coding protein_coding MGP_C3HHeJ_T0029324.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61065260 61098504 - Epn2 protein_coding processed_transcript MGP_C3HHeJ_T0029325.1 MGP_C3HHeJ_G0018195.1 mouse_genomes_project 11 61074275 61098512 - Epn2 protein_coding processed_transcript MGP_C3HHeJ_T0012388.1 MGP_C3HHeJ_G0010492.1 mouse_genomes_project 11 15683819 15685760 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029907.1 MGP_C3HHeJ_G0018330.1 mouse_genomes_project 11 69885603 69895120 + MGP_C3HHeJ_P0029907 Dvl2 protein_coding protein_coding MGP_C3HHeJ_T0029908.1 MGP_C3HHeJ_G0018330.1 mouse_genomes_project 11 69885625 69897310 + MGP_C3HHeJ_P0029908 Dvl2 protein_coding protein_coding MGP_C3HHeJ_T0029909.1 MGP_C3HHeJ_G0018330.1 mouse_genomes_project 11 69885829 69891970 + Dvl2 protein_coding retained_intron MGP_C3HHeJ_T0029910.1 MGP_C3HHeJ_G0018330.1 mouse_genomes_project 11 69885843 69891022 + Dvl2 protein_coding retained_intron MGP_C3HHeJ_T0029911.1 MGP_C3HHeJ_G0018330.1 mouse_genomes_project 11 69890466 69892482 + Dvl2 protein_coding retained_intron MGP_C3HHeJ_T0029912.1 MGP_C3HHeJ_G0018330.1 mouse_genomes_project 11 69891988 69893078 + Dvl2 protein_coding retained_intron MGP_C3HHeJ_T0003207.1 MGP_C3HHeJ_G0002965.1 mouse_genomes_project 11 97678215 97684023 - Gm11536 antisense antisense MGP_C3HHeJ_T0030192.1 MGP_C3HHeJ_G0018385.1 mouse_genomes_project 11 72194329 72196798 + MGP_C3HHeJ_P0030192 Txndc17 protein_coding protein_coding MGP_C3HHeJ_T0030193.1 MGP_C3HHeJ_G0018385.1 mouse_genomes_project 11 72194397 72195460 + Txndc17 protein_coding retained_intron MGP_C3HHeJ_T0009611.1 MGP_C3HHeJ_G0007744.1 mouse_genomes_project 11 69480856 69480976 - Mir467f miRNA miRNA MGP_C3HHeJ_T0032205.1 MGP_C3HHeJ_G0018933.1 mouse_genomes_project 11 102844319 102849442 + MGP_C3HHeJ_P0032205 protein_coding unknown_likely_coding MGP_C3HHeJ_T0032206.1 MGP_C3HHeJ_G0018933.1 mouse_genomes_project 11 102848687 102851561 + protein_coding processed_transcript MGP_C3HHeJ_T0028814.1 MGP_C3HHeJ_G0018052.1 mouse_genomes_project 11 52672164 52675550 - MGP_C3HHeJ_P0028814 Il13 protein_coding protein_coding MGP_C3HHeJ_T0006111.1 MGP_C3HHeJ_G0005096.1 mouse_genomes_project 11 20119315 20120395 + Gm12052 lincRNA lincRNA MGP_C3HHeJ_T0097998.1 MGP_C3HHeJ_G0036210.1 mouse_genomes_project 11 86489266 86489382 + Gm23473 rRNA rRNA MGP_C3HHeJ_T0003240.1 MGP_C3HHeJ_G0002992.1 mouse_genomes_project 11 105261979 105267172 + Arhgap27os3 antisense antisense MGP_C3HHeJ_T0028794.1 MGP_C3HHeJ_G0018048.1 mouse_genomes_project 11 52510718 52511646 + MGP_C3HHeJ_P0028794 Gm9945 protein_coding protein_coding MGP_C3HHeJ_T0030421.1 MGP_C3HHeJ_G0018462.1 mouse_genomes_project 11 75493027 75550331 + MGP_C3HHeJ_P0030421 Smyd4 protein_coding protein_coding MGP_C3HHeJ_T0030422.1 MGP_C3HHeJ_G0018462.1 mouse_genomes_project 11 75493089 75527137 + Smyd4 protein_coding retained_intron MGP_C3HHeJ_T0030423.1 MGP_C3HHeJ_G0018462.1 mouse_genomes_project 11 75531587 75534791 + Smyd4 protein_coding processed_transcript MGP_C3HHeJ_T0030424.1 MGP_C3HHeJ_G0018462.1 mouse_genomes_project 11 75544235 75545260 + Smyd4 protein_coding processed_transcript MGP_C3HHeJ_T0009600.1 MGP_C3HHeJ_G0007733.1 mouse_genomes_project 11 59589882 59589962 - Mir6921 miRNA miRNA MGP_C3HHeJ_T0033710.1 MGP_C3HHeJ_G0019238.1 mouse_genomes_project 11 122868288 122891631 - MGP_C3HHeJ_P0033710 Cep131 protein_coding protein_coding MGP_C3HHeJ_T0033711.1 MGP_C3HHeJ_G0019238.1 mouse_genomes_project 11 122868292 122868827 - Cep131 protein_coding processed_transcript MGP_C3HHeJ_T0033712.1 MGP_C3HHeJ_G0019238.1 mouse_genomes_project 11 122868497 122871928 - Cep131 protein_coding processed_transcript MGP_C3HHeJ_T0033713.1 MGP_C3HHeJ_G0019238.1 mouse_genomes_project 11 122871003 122874796 - Cep131 protein_coding processed_transcript MGP_C3HHeJ_T0033714.1 MGP_C3HHeJ_G0019238.1 mouse_genomes_project 11 122871959 122875911 - Cep131 protein_coding processed_transcript MGP_C3HHeJ_T0028763.1 MGP_C3HHeJ_G0018038.1 mouse_genomes_project 11 52269591 52316887 - MGP_C3HHeJ_P0028763 Hspa4 protein_coding protein_coding MGP_C3HHeJ_T0028764.1 MGP_C3HHeJ_G0018038.1 mouse_genomes_project 11 52271389 52316596 - MGP_C3HHeJ_P0028764 Hspa4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028765.1 MGP_C3HHeJ_G0018038.1 mouse_genomes_project 11 52272582 52280392 - Hspa4 protein_coding retained_intron MGP_C3HHeJ_T0028766.1 MGP_C3HHeJ_G0018038.1 mouse_genomes_project 11 52276795 52316841 - Hspa4 protein_coding processed_transcript MGP_C3HHeJ_T0003235.1 MGP_C3HHeJ_G0002987.1 mouse_genomes_project 11 103799946 103800663 + Gm20659 antisense antisense MGP_C3HHeJ_T0028482.1 MGP_C3HHeJ_G0017961.1 mouse_genomes_project 11 47426894 47436520 - Irgm1 protein_coding processed_transcript MGP_C3HHeJ_T0028483.1 MGP_C3HHeJ_G0017961.1 mouse_genomes_project 11 47430171 47436211 - MGP_C3HHeJ_P0028483 Irgm1 protein_coding protein_coding MGP_C3HHeJ_T0028484.1 MGP_C3HHeJ_G0017961.1 mouse_genomes_project 11 47431044 47436257 - MGP_C3HHeJ_P0028484 Irgm1 protein_coding protein_coding MGP_C3HHeJ_T0032500.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104309523 104327503 - MGP_C3HHeJ_P0032500 Itga2b protein_coding protein_coding MGP_C3HHeJ_T0032501.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104309530 104312422 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032502.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104312070 104313541 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032503.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104312128 104315249 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032504.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104312703 104324819 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032505.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104313420 104315043 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032506.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104314193 104317519 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032507.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104317896 104318622 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032508.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104322972 104324575 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0032509.1 MGP_C3HHeJ_G0018988.1 mouse_genomes_project 11 104325419 104327742 - Itga2b protein_coding processed_transcript MGP_C3HHeJ_T0012452.1 MGP_C3HHeJ_G0010556.1 mouse_genomes_project 11 38726313 38726975 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003130.1 MGP_C3HHeJ_G0002905.1 mouse_genomes_project 11 62211709 62215803 + Lrrc75aos1 antisense antisense MGP_C3HHeJ_T0029363.1 MGP_C3HHeJ_G0018203.1 mouse_genomes_project 11 61798733 61817091 + MGP_C3HHeJ_P0029363 Adora2b protein_coding protein_coding MGP_C3HHeJ_T0032613.1 MGP_C3HHeJ_G0019011.1 mouse_genomes_project 11 105120664 105130970 - MGP_C3HHeJ_P0032613 Spata32 protein_coding protein_coding MGP_C3HHeJ_T0098826.1 MGP_C3HHeJ_G0037020.1 mouse_genomes_project 11 111720399 111720510 - Gm22378 snRNA snRNA MGP_C3HHeJ_T0029959.1 MGP_C3HHeJ_G0018339.1 mouse_genomes_project 11 70124829 70130441 - MGP_C3HHeJ_P0029959 Bcl6b protein_coding protein_coding MGP_C3HHeJ_T0029960.1 MGP_C3HHeJ_G0018339.1 mouse_genomes_project 11 70129241 70130379 - MGP_C3HHeJ_P0029960 Bcl6b protein_coding protein_coding MGP_C3HHeJ_T0029961.1 MGP_C3HHeJ_G0018339.1 mouse_genomes_project 11 70129310 70130500 - Bcl6b protein_coding retained_intron MGP_C3HHeJ_T0101630.1 MGP_C3HHeJ_G0039596.1 mouse_genomes_project 11 47691514 47695487 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101628.1 MGP_C3HHeJ_G0039594.1 mouse_genomes_project 11 45006713 45007013 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0030525.1 MGP_C3HHeJ_G0018483.1 mouse_genomes_project 11 76416703 76423787 - MGP_C3HHeJ_P0030525 Gemin4 protein_coding protein_coding MGP_C3HHeJ_T0030526.1 MGP_C3HHeJ_G0018483.1 mouse_genomes_project 11 76423201 76423640 - MGP_C3HHeJ_P0030526 Gemin4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012428.1 MGP_C3HHeJ_G0010532.1 mouse_genomes_project 11 27104061 27104266 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017016.1 MGP_C3HHeJ_G0014958.1 mouse_genomes_project 11 98229693 98241535 - Gm11523 processed_transcript lincRNA MGP_C3HHeJ_T0017017.1 MGP_C3HHeJ_G0014958.1 mouse_genomes_project 11 98229986 98241541 - Gm11523 processed_transcript lincRNA MGP_C3HHeJ_T0017018.1 MGP_C3HHeJ_G0014958.1 mouse_genomes_project 11 98230115 98241521 - Gm11523 processed_transcript antisense MGP_C3HHeJ_T0003196.1 MGP_C3HHeJ_G0002956.1 mouse_genomes_project 11 96305734 96311263 + Gm11513 antisense antisense MGP_C3HHeJ_T0032528.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104650565 104670112 + MGP_C3HHeJ_P0032528 Adam11 protein_coding protein_coding MGP_C3HHeJ_T0032529.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104650565 104670112 + MGP_C3HHeJ_P0032529 Adam11 protein_coding protein_coding MGP_C3HHeJ_T0032530.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104651211 104661320 + Adam11 protein_coding processed_transcript MGP_C3HHeJ_T0032531.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104651308 104661680 + Adam11 protein_coding processed_transcript MGP_C3HHeJ_T0032532.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104659608 104661613 + Adam11 protein_coding processed_transcript MGP_C3HHeJ_T0032533.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104661327 104663511 + Adam11 protein_coding processed_transcript MGP_C3HHeJ_T0032534.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104663930 104665976 + Adam11 protein_coding processed_transcript MGP_C3HHeJ_T0032535.1 MGP_C3HHeJ_G0018994.1 mouse_genomes_project 11 104663966 104666253 + Adam11 protein_coding processed_transcript MGP_C3HHeJ_T0097846.1 MGP_C3HHeJ_G0036058.1 mouse_genomes_project 11 115879909 115884206 + pseudogene pseudogene MGP_C3HHeJ_T0031953.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100519457 100551352 - MGP_C3HHeJ_P0031953 Top2a protein_coding unknown_likely_coding MGP_C3HHeJ_T0031954.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100519458 100551475 - MGP_C3HHeJ_P0031954 Top2a protein_coding protein_coding MGP_C3HHeJ_T0031955.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100519586 100522240 - Top2a protein_coding processed_transcript MGP_C3HHeJ_T0031956.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100519982 100521886 - Top2a protein_coding processed_transcript MGP_C3HHeJ_T0031957.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100526468 100527782 - Top2a protein_coding processed_transcript MGP_C3HHeJ_T0031958.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100530145 100533779 - Top2a protein_coding processed_transcript MGP_C3HHeJ_T0031959.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100543852 100549506 - Top2a protein_coding processed_transcript MGP_C3HHeJ_T0031960.1 MGP_C3HHeJ_G0018835.1 mouse_genomes_project 11 100549380 100551464 - Top2a protein_coding processed_transcript MGP_C3HHeJ_T0029983.1 MGP_C3HHeJ_G0018345.1 mouse_genomes_project 11 70252129 70259993 - MGP_C3HHeJ_P0029983 Alox15 protein_coding protein_coding MGP_C3HHeJ_T0029984.1 MGP_C3HHeJ_G0018345.1 mouse_genomes_project 11 70252582 70253674 - Alox15 protein_coding processed_transcript MGP_C3HHeJ_T0016991.1 MGP_C3HHeJ_G0014945.1 mouse_genomes_project 11 75613665 75619728 + Mir22hg processed_transcript processed_transcript MGP_C3HHeJ_T0016992.1 MGP_C3HHeJ_G0014945.1 mouse_genomes_project 11 75613770 75616156 + Mir22hg processed_transcript processed_transcript MGP_C3HHeJ_T0009650.1 MGP_C3HHeJ_G0007783.1 mouse_genomes_project 11 98214720 98214793 + Mir152 miRNA miRNA MGP_C3HHeJ_T0031673.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98277747 98286798 - MGP_C3HHeJ_P0031673 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031674.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98277747 98286798 - MGP_C3HHeJ_P0031674 Cdk5rap3 protein_coding protein_coding MGP_C3HHeJ_T0031675.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98278137 98279080 - Cdk5rap3 protein_coding retained_intron MGP_C3HHeJ_T0031676.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98281775 98283189 - Cdk5rap3 protein_coding retained_intron MGP_C3HHeJ_T0031677.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98282264 98286694 - MGP_C3HHeJ_P0031677 Cdk5rap3 protein_coding protein_coding MGP_C3HHeJ_T0031678.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98282281 98286409 - MGP_C3HHeJ_P0031678 Cdk5rap3 protein_coding protein_coding MGP_C3HHeJ_T0031679.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98282303 98286731 - MGP_C3HHeJ_P0031679 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031680.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98282536 98286668 - MGP_C3HHeJ_P0031680 Cdk5rap3 protein_coding protein_coding MGP_C3HHeJ_T0031681.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98282557 98286716 - MGP_C3HHeJ_P0031681 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031682.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98282667 98286716 - MGP_C3HHeJ_P0031682 Cdk5rap3 protein_coding protein_coding MGP_C3HHeJ_T0031683.1 MGP_C3HHeJ_G0018770.1 mouse_genomes_project 11 98283004 98286669 - Cdk5rap3 protein_coding retained_intron MGP_C3HHeJ_T0030839.1 MGP_C3HHeJ_G0018554.1 mouse_genomes_project 11 79917670 79921699 - MGP_C3HHeJ_P0030839 Evi2a protein_coding protein_coding MGP_C3HHeJ_T0030840.1 MGP_C3HHeJ_G0018554.1 mouse_genomes_project 11 79917678 79921720 - MGP_C3HHeJ_P0030840 Evi2a protein_coding protein_coding MGP_C3HHeJ_T0030841.1 MGP_C3HHeJ_G0018554.1 mouse_genomes_project 11 79918067 79918886 - MGP_C3HHeJ_P0030841 Evi2a protein_coding protein_coding MGP_C3HHeJ_T0030842.1 MGP_C3HHeJ_G0018554.1 mouse_genomes_project 11 79918795 79919257 - MGP_C3HHeJ_P0030842 Evi2a protein_coding protein_coding MGP_C3HHeJ_T0030843.1 MGP_C3HHeJ_G0018554.1 mouse_genomes_project 11 79919178 79921720 - Evi2a protein_coding processed_transcript MGP_C3HHeJ_T0031183.1 MGP_C3HHeJ_G0018645.1 mouse_genomes_project 11 87283061 87304851 + MGP_C3HHeJ_P0031183 Tubd1 protein_coding protein_coding MGP_C3HHeJ_T0031184.1 MGP_C3HHeJ_G0018645.1 mouse_genomes_project 11 87283061 87304852 + MGP_C3HHeJ_P0031184 Tubd1 protein_coding protein_coding MGP_C3HHeJ_T0031185.1 MGP_C3HHeJ_G0018645.1 mouse_genomes_project 11 87283061 87304852 + MGP_C3HHeJ_P0031185 Tubd1 protein_coding protein_coding MGP_C3HHeJ_T0031186.1 MGP_C3HHeJ_G0018645.1 mouse_genomes_project 11 87283061 87304852 + MGP_C3HHeJ_P0031186 Tubd1 protein_coding protein_coding MGP_C3HHeJ_T0031187.1 MGP_C3HHeJ_G0018645.1 mouse_genomes_project 11 87293049 87304852 + MGP_C3HHeJ_P0031187 Tubd1 protein_coding protein_coding MGP_C3HHeJ_T0100016.1 MGP_C3HHeJ_G0038210.1 mouse_genomes_project 11 60283958 60284198 + Gm24945 snoRNA snoRNA MGP_C3HHeJ_T0100056.1 MGP_C3HHeJ_G0038250.1 mouse_genomes_project 11 119328996 119329070 + Snord1a snoRNA snoRNA MGP_C3HHeJ_T0012392.1 MGP_C3HHeJ_G0010496.1 mouse_genomes_project 11 16756978 16758018 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028830.1 MGP_C3HHeJ_G0018056.1 mouse_genomes_project 11 52827811 52828718 - MGP_C3HHeJ_P0028830 Gm17334 protein_coding protein_coding MGP_C3HHeJ_T0030835.1 MGP_C3HHeJ_G0018551.1 mouse_genomes_project 11 79886267 79892973 - MGP_C3HHeJ_P0030835 Omg protein_coding protein_coding MGP_C3HHeJ_T0027736.1 MGP_C3HHeJ_G0017776.1 mouse_genomes_project 11 3422922 3427398 + MGP_C3HHeJ_P0027736 Ppia protein_coding protein_coding MGP_C3HHeJ_T0027737.1 MGP_C3HHeJ_G0017776.1 mouse_genomes_project 11 3423347 3425917 + Ppia protein_coding retained_intron MGP_C3HHeJ_T0027738.1 MGP_C3HHeJ_G0017776.1 mouse_genomes_project 11 3423355 3427393 + Ppia protein_coding retained_intron MGP_C3HHeJ_T0012584.1 MGP_C3HHeJ_G0010688.1 mouse_genomes_project 11 88054049 88054321 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012575.1 MGP_C3HHeJ_G0010679.1 mouse_genomes_project 11 84419551 84420166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012491.1 MGP_C3HHeJ_G0010595.1 mouse_genomes_project 11 53500494 53500792 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012390.1 MGP_C3HHeJ_G0010494.1 mouse_genomes_project 11 15954787 15956033 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032875.1 MGP_C3HHeJ_G0019070.1 mouse_genomes_project 11 109314080 109598104 - MGP_C3HHeJ_P0032875 Pitpnc1 protein_coding protein_coding MGP_C3HHeJ_T0032876.1 MGP_C3HHeJ_G0019070.1 mouse_genomes_project 11 109314080 109454862 - MGP_C3HHeJ_P0032876 Pitpnc1 protein_coding protein_coding MGP_C3HHeJ_T0032877.1 MGP_C3HHeJ_G0019070.1 mouse_genomes_project 11 109333096 109466433 - MGP_C3HHeJ_P0032877 Pitpnc1 protein_coding protein_coding MGP_C3HHeJ_T0032878.1 MGP_C3HHeJ_G0019070.1 mouse_genomes_project 11 109436348 109454751 - Pitpnc1 protein_coding processed_transcript MGP_C3HHeJ_T0031604.1 MGP_C3HHeJ_G0018750.1 mouse_genomes_project 11 97361018 97372982 + MGP_C3HHeJ_P0031604 Snf8 protein_coding protein_coding MGP_C3HHeJ_T0031605.1 MGP_C3HHeJ_G0018750.1 mouse_genomes_project 11 97361089 97369230 + Snf8 protein_coding processed_transcript MGP_C3HHeJ_T0031606.1 MGP_C3HHeJ_G0018750.1 mouse_genomes_project 11 97361098 97372982 + MGP_C3HHeJ_P0031606 Snf8 protein_coding protein_coding MGP_C3HHeJ_T0031607.1 MGP_C3HHeJ_G0018750.1 mouse_genomes_project 11 97370236 97372982 + Snf8 protein_coding processed_transcript MGP_C3HHeJ_T0031608.1 MGP_C3HHeJ_G0018750.1 mouse_genomes_project 11 97370370 97372863 + Snf8 protein_coding processed_transcript MGP_C3HHeJ_T0032043.1 MGP_C3HHeJ_G0018894.1 mouse_genomes_project 11 101790502 101795813 - MGP_C3HHeJ_P0032043 Krt19 protein_coding protein_coding MGP_C3HHeJ_T0032044.1 MGP_C3HHeJ_G0018894.1 mouse_genomes_project 11 101790599 101793392 - Krt19 protein_coding processed_transcript MGP_C3HHeJ_T0032045.1 MGP_C3HHeJ_G0018894.1 mouse_genomes_project 11 101791812 101798358 - Krt19 protein_coding processed_transcript MGP_C3HHeJ_T0012596.1 MGP_C3HHeJ_G0010700.1 mouse_genomes_project 11 94824124 94825335 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033618.1 MGP_C3HHeJ_G0019222.1 mouse_genomes_project 11 121803274 121807972 - MGP_C3HHeJ_P0033618 Cbx8 protein_coding protein_coding MGP_C3HHeJ_T0033619.1 MGP_C3HHeJ_G0019222.1 mouse_genomes_project 11 121806055 121807834 - Cbx8 protein_coding processed_transcript MGP_C3HHeJ_T0033620.1 MGP_C3HHeJ_G0019222.1 mouse_genomes_project 11 121806186 121807914 - Cbx8 protein_coding processed_transcript MGP_C3HHeJ_T0032289.1 MGP_C3HHeJ_G0018952.1 mouse_genomes_project 11 103178672 103189229 + MGP_C3HHeJ_P0032289 Rundc1 protein_coding protein_coding MGP_C3HHeJ_T0028752.1 MGP_C3HHeJ_G0018034.1 mouse_genomes_project 11 51209763 51240631 - MGP_C3HHeJ_P0028752 Tcf7 protein_coding protein_coding MGP_C3HHeJ_T0028982.1 MGP_C3HHeJ_G0018097.1 mouse_genomes_project 11 57451645 57459878 + MGP_C3HHeJ_P0028982 Igtp protein_coding protein_coding MGP_C3HHeJ_T0028983.1 MGP_C3HHeJ_G0018097.1 mouse_genomes_project 11 57451675 57459852 + MGP_C3HHeJ_P0028983 Igtp protein_coding protein_coding MGP_C3HHeJ_T0028984.1 MGP_C3HHeJ_G0018097.1 mouse_genomes_project 11 57451677 57459862 + MGP_C3HHeJ_P0028984 Igtp protein_coding protein_coding MGP_C3HHeJ_T0030972.1 MGP_C3HHeJ_G0018589.1 mouse_genomes_project 11 83421090 83456036 + MGP_C3HHeJ_P0030972 Unc45b protein_coding protein_coding MGP_C3HHeJ_T0030973.1 MGP_C3HHeJ_G0018589.1 mouse_genomes_project 11 83421793 83456036 + MGP_C3HHeJ_P0030973 Unc45b protein_coding protein_coding MGP_C3HHeJ_T0030974.1 MGP_C3HHeJ_G0018589.1 mouse_genomes_project 11 83421793 83456036 + MGP_C3HHeJ_P0030974 Unc45b protein_coding protein_coding MGP_C3HHeJ_T0030975.1 MGP_C3HHeJ_G0018589.1 mouse_genomes_project 11 83440015 83440802 + Unc45b protein_coding processed_transcript MGP_C3HHeJ_T0030976.1 MGP_C3HHeJ_G0018589.1 mouse_genomes_project 11 83446178 83450286 + Unc45b protein_coding processed_transcript MGP_C3HHeJ_T0006199.1 MGP_C3HHeJ_G0005170.1 mouse_genomes_project 11 71898305 71910612 - 4930401O10Rik lincRNA lincRNA MGP_C3HHeJ_T0006150.1 MGP_C3HHeJ_G0005129.1 mouse_genomes_project 11 42686357 42688419 - Gm12154 lincRNA lincRNA MGP_C3HHeJ_T0030766.1 MGP_C3HHeJ_G0018532.1 mouse_genomes_project 11 78716645 78741766 - MGP_C3HHeJ_P0030766 Slc13a2 protein_coding protein_coding MGP_C3HHeJ_T0003147.1 MGP_C3HHeJ_G0002918.1 mouse_genomes_project 11 67957418 67961379 - C78197 antisense antisense MGP_C3HHeJ_T0028072.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26143664 26350062 - MGP_C3HHeJ_P0028072 Ccdc85a protein_coding protein_coding MGP_C3HHeJ_T0028073.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26143673 26350062 - MGP_C3HHeJ_P0028073 Ccdc85a protein_coding protein_coding MGP_C3HHeJ_T0028074.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26143673 26350090 - MGP_C3HHeJ_P0028074 Ccdc85a protein_coding protein_coding MGP_C3HHeJ_T0028075.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26145133 26349761 - MGP_C3HHeJ_P0028075 Ccdc85a protein_coding protein_coding MGP_C3HHeJ_T0028076.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26146798 26195105 - MGP_C3HHeJ_P0028076 Ccdc85a protein_coding protein_coding MGP_C3HHeJ_T0028077.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26146825 26342056 - MGP_C3HHeJ_P0028077 Ccdc85a protein_coding protein_coding MGP_C3HHeJ_T0028078.1 MGP_C3HHeJ_G0017855.1 mouse_genomes_project 11 26340829 26350032 - Ccdc85a protein_coding retained_intron MGP_C3HHeJ_T0028847.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53192384 53206860 + MGP_C3HHeJ_P0028847 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028848.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193213 53224537 + MGP_C3HHeJ_P0028848 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028849.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193252 53220647 + P4ha2 protein_coding retained_intron MGP_C3HHeJ_T0028850.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193252 53224537 + MGP_C3HHeJ_P0028850 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028851.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193264 53204311 + P4ha2 protein_coding retained_intron MGP_C3HHeJ_T0028852.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193264 53224547 + MGP_C3HHeJ_P0028852 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028853.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193269 53202990 + MGP_C3HHeJ_P0028853 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028854.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193280 53204239 + MGP_C3HHeJ_P0028854 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028855.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193357 53204250 + MGP_C3HHeJ_P0028855 P4ha2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028856.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53193534 53204250 + MGP_C3HHeJ_P0028856 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028857.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53199995 53206950 + MGP_C3HHeJ_P0028857 P4ha2 protein_coding protein_coding MGP_C3HHeJ_T0028858.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53203696 53212922 + MGP_C3HHeJ_P0028858 P4ha2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028859.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53205878 53206950 + P4ha2 protein_coding processed_transcript MGP_C3HHeJ_T0028860.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53217557 53218947 + P4ha2 protein_coding retained_intron MGP_C3HHeJ_T0028861.1 MGP_C3HHeJ_G0018062.1 mouse_genomes_project 11 53220577 53224550 + P4ha2 protein_coding retained_intron MGP_C3HHeJ_T0031297.1 MGP_C3HHeJ_G0018672.1 mouse_genomes_project 11 88744265 88745349 - MGP_C3HHeJ_P0031297 Olfr464 protein_coding protein_coding MGP_C3HHeJ_T0031298.1 MGP_C3HHeJ_G0018672.1 mouse_genomes_project 11 88744910 88746849 - MGP_C3HHeJ_P0031298 Olfr464 protein_coding protein_coding MGP_C3HHeJ_T0012572.1 MGP_C3HHeJ_G0010676.1 mouse_genomes_project 11 83228035 83228329 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029535.1 MGP_C3HHeJ_G0018245.1 mouse_genomes_project 11 67398125 67500049 - MGP_C3HHeJ_P0029535 Glp2r protein_coding protein_coding MGP_C3HHeJ_T0029538.1 MGP_C3HHeJ_G0018245.1 mouse_genomes_project 11 67447394 67515832 - MGP_C3HHeJ_P0029538 Glp2r protein_coding protein_coding MGP_C3HHeJ_T0027722.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3289652 3355301 + MGP_C3HHeJ_P0027722 Ogdh protein_coding unknown_likely_coding MGP_C3HHeJ_T0027723.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3289661 3356268 + MGP_C3HHeJ_P0027723 Ogdh protein_coding protein_coding MGP_C3HHeJ_T0027724.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3289669 3295707 + Ogdh protein_coding retained_intron MGP_C3HHeJ_T0027725.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3289694 3356204 + MGP_C3HHeJ_P0027725 Ogdh protein_coding protein_coding MGP_C3HHeJ_T0027726.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3289696 3356218 + MGP_C3HHeJ_P0027726 Ogdh protein_coding protein_coding MGP_C3HHeJ_T0027727.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3290013 3311711 + MGP_C3HHeJ_P0027727 Ogdh protein_coding protein_coding MGP_C3HHeJ_T0027728.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3290200 3311595 + MGP_C3HHeJ_P0027728 Ogdh protein_coding protein_coding MGP_C3HHeJ_T0027729.1 MGP_C3HHeJ_G0017774.1 mouse_genomes_project 11 3290633 3356218 + MGP_C3HHeJ_P0027729 Ogdh protein_coding protein_coding MGP_C3HHeJ_T0028312.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38989292 39003611 - MGP_C3HHeJ_P0028312 Mat2b protein_coding protein_coding MGP_C3HHeJ_T0028313.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38989292 39006037 - MGP_C3HHeJ_P0028313 Mat2b protein_coding protein_coding MGP_C3HHeJ_T0028314.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38990635 39003458 - MGP_C3HHeJ_P0028314 Mat2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028315.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38990689 38995224 - Mat2b protein_coding retained_intron MGP_C3HHeJ_T0028316.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38994703 38995817 - Mat2b protein_coding retained_intron MGP_C3HHeJ_T0028317.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38995482 39003465 - Mat2b protein_coding retained_intron MGP_C3HHeJ_T0028318.1 MGP_C3HHeJ_G0017915.1 mouse_genomes_project 11 38997336 39005821 - Mat2b protein_coding retained_intron MGP_C3HHeJ_T0006121.1 MGP_C3HHeJ_G0005106.1 mouse_genomes_project 11 22493273 22517417 - Gm12665 lincRNA lincRNA MGP_C3HHeJ_T0006122.1 MGP_C3HHeJ_G0005106.1 mouse_genomes_project 11 22493273 22517409 - Gm12665 lincRNA lincRNA MGP_C3HHeJ_T0032004.1 MGP_C3HHeJ_G0018860.1 mouse_genomes_project 11 101178912 101180248 - MGP_C3HHeJ_P0032004 protein_coding protein_coding MGP_C3HHeJ_T0032651.1 MGP_C3HHeJ_G0019022.1 mouse_genomes_project 11 105910565 105930960 + MGP_C3HHeJ_P0032651 Arf2 protein_coding protein_coding MGP_C3HHeJ_T0032652.1 MGP_C3HHeJ_G0019022.1 mouse_genomes_project 11 105910697 105930960 + MGP_C3HHeJ_P0032652 Arf2 protein_coding protein_coding MGP_C3HHeJ_T0032653.1 MGP_C3HHeJ_G0019022.1 mouse_genomes_project 11 105917607 105927521 + Arf2 protein_coding retained_intron MGP_C3HHeJ_T0032654.1 MGP_C3HHeJ_G0019022.1 mouse_genomes_project 11 105925211 105929250 + MGP_C3HHeJ_P0032654 Arf2 protein_coding protein_coding MGP_C3HHeJ_T0033988.1 MGP_C3HHeJ_G0019294.1 mouse_genomes_project 11 124216264 124252025 - MGP_C3HHeJ_P0033988 Wdr45b protein_coding protein_coding MGP_C3HHeJ_T0033989.1 MGP_C3HHeJ_G0019294.1 mouse_genomes_project 11 124217100 124238217 - Wdr45b protein_coding processed_transcript MGP_C3HHeJ_T0033990.1 MGP_C3HHeJ_G0019294.1 mouse_genomes_project 11 124219961 124251921 - MGP_C3HHeJ_P0033990 Wdr45b protein_coding protein_coding MGP_C3HHeJ_T0033991.1 MGP_C3HHeJ_G0019294.1 mouse_genomes_project 11 124224250 124251973 - MGP_C3HHeJ_P0033991 Wdr45b protein_coding protein_coding MGP_C3HHeJ_T0033992.1 MGP_C3HHeJ_G0019294.1 mouse_genomes_project 11 124244618 124251981 - Wdr45b protein_coding retained_intron MGP_C3HHeJ_T0030729.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78568331 78570960 + 2610507B11Rik protein_coding processed_transcript MGP_C3HHeJ_T0030730.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78568331 78598238 + MGP_C3HHeJ_P0030730 2610507B11Rik protein_coding protein_coding MGP_C3HHeJ_T0030731.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78569399 78570894 + 2610507B11Rik protein_coding retained_intron MGP_C3HHeJ_T0030732.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78573060 78575107 + 2610507B11Rik protein_coding retained_intron MGP_C3HHeJ_T0030733.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78578897 78580351 + 2610507B11Rik protein_coding retained_intron MGP_C3HHeJ_T0030734.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78580077 78581814 + MGP_C3HHeJ_P0030734 2610507B11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030735.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78593023 78595377 + 2610507B11Rik protein_coding retained_intron MGP_C3HHeJ_T0030736.1 MGP_C3HHeJ_G0018525.1 mouse_genomes_project 11 78595333 78597325 + 2610507B11Rik protein_coding retained_intron MGP_C3HHeJ_T0017041.1 MGP_C3HHeJ_G0014976.1 mouse_genomes_project 11 109662818 109680278 - A830035A12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0006303.1 MGP_C3HHeJ_G0005245.1 mouse_genomes_project 11 121992486 121995750 + Gm11752 lincRNA lincRNA MGP_C3HHeJ_T0030013.1 MGP_C3HHeJ_G0018353.1 mouse_genomes_project 11 70440747 70442288 + MGP_C3HHeJ_P0030013 Gltpd2 protein_coding protein_coding MGP_C3HHeJ_T0030014.1 MGP_C3HHeJ_G0018353.1 mouse_genomes_project 11 70441190 70442071 + MGP_C3HHeJ_P0030014 Gltpd2 protein_coding protein_coding MGP_C3HHeJ_T0030724.1 MGP_C3HHeJ_G0018523.1 mouse_genomes_project 11 78512587 78552483 - MGP_C3HHeJ_P0030724 Supt6 protein_coding protein_coding MGP_C3HHeJ_T0030725.1 MGP_C3HHeJ_G0018523.1 mouse_genomes_project 11 78512869 78529790 - Supt6 protein_coding retained_intron MGP_C3HHeJ_T0032246.1 MGP_C3HHeJ_G0018942.1 mouse_genomes_project 11 103020020 103021167 - MGP_C3HHeJ_P0032246 Coa3 protein_coding protein_coding MGP_C3HHeJ_T0032247.1 MGP_C3HHeJ_G0018942.1 mouse_genomes_project 11 103020390 103020996 - MGP_C3HHeJ_P0032247 Coa3 protein_coding protein_coding MGP_C3HHeJ_T0006171.1 MGP_C3HHeJ_G0005148.1 mouse_genomes_project 11 59500622 59503709 - 4930412M03Rik lincRNA lincRNA MGP_C3HHeJ_T0012562.1 MGP_C3HHeJ_G0010666.1 mouse_genomes_project 11 78908284 78909403 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030196.1 MGP_C3HHeJ_G0018387.1 mouse_genomes_project 11 72230174 72255412 - MGP_C3HHeJ_P0030196 Slc13a5 protein_coding protein_coding MGP_C3HHeJ_T0030197.1 MGP_C3HHeJ_G0018387.1 mouse_genomes_project 11 72249144 72255412 - MGP_C3HHeJ_P0030197 Slc13a5 protein_coding protein_coding MGP_C3HHeJ_T0030198.1 MGP_C3HHeJ_G0018387.1 mouse_genomes_project 11 72250449 72256032 - MGP_C3HHeJ_P0030198 Slc13a5 protein_coding protein_coding MGP_C3HHeJ_T0029860.1 MGP_C3HHeJ_G0018321.1 mouse_genomes_project 11 69794476 69797165 + MGP_C3HHeJ_P0029860 Gps2 protein_coding protein_coding MGP_C3HHeJ_T0029861.1 MGP_C3HHeJ_G0018321.1 mouse_genomes_project 11 69794638 69797179 + MGP_C3HHeJ_P0029861 Gps2 protein_coding protein_coding MGP_C3HHeJ_T0029862.1 MGP_C3HHeJ_G0018321.1 mouse_genomes_project 11 69794780 69797180 + MGP_C3HHeJ_P0029862 Gps2 protein_coding protein_coding MGP_C3HHeJ_T0029863.1 MGP_C3HHeJ_G0018321.1 mouse_genomes_project 11 69795433 69796469 + Gps2 protein_coding processed_transcript MGP_C3HHeJ_T0029864.1 MGP_C3HHeJ_G0018321.1 mouse_genomes_project 11 69796629 69797145 + MGP_C3HHeJ_P0029864 Gps2 protein_coding protein_coding MGP_C3HHeJ_T0029680.1 MGP_C3HHeJ_G0018277.1 mouse_genomes_project 11 69034481 69054824 - MGP_C3HHeJ_P0029680 Gucy2e protein_coding protein_coding MGP_C3HHeJ_T0029681.1 MGP_C3HHeJ_G0018277.1 mouse_genomes_project 11 69034484 69054824 - MGP_C3HHeJ_P0029681 Gucy2e protein_coding protein_coding MGP_C3HHeJ_T0029682.1 MGP_C3HHeJ_G0018277.1 mouse_genomes_project 11 69037522 69054838 - MGP_C3HHeJ_P0029682 Gucy2e protein_coding protein_coding MGP_C3HHeJ_T0029683.1 MGP_C3HHeJ_G0018277.1 mouse_genomes_project 11 69044430 69054824 - Gucy2e protein_coding processed_transcript MGP_C3HHeJ_T0100044.1 MGP_C3HHeJ_G0038238.1 mouse_genomes_project 11 99216842 99216979 - Snora21 snoRNA snoRNA MGP_C3HHeJ_T0031208.1 MGP_C3HHeJ_G0018650.1 mouse_genomes_project 11 87673657 87730852 - MGP_C3HHeJ_P0031208 Ypel2 protein_coding protein_coding MGP_C3HHeJ_T0097842.1 MGP_C3HHeJ_G0036054.1 mouse_genomes_project 11 43058307 43058763 + pseudogene pseudogene MGP_C3HHeJ_T0028543.1 MGP_C3HHeJ_G0017983.1 mouse_genomes_project 11 48195296 48196497 + MGP_C3HHeJ_P0028543 protein_coding protein_coding MGP_C3HHeJ_T0031353.1 MGP_C3HHeJ_G0018689.1 mouse_genomes_project 11 90339506 90482019 - MGP_C3HHeJ_P0031353 protein_coding unknown_likely_coding MGP_C3HHeJ_T0031354.1 MGP_C3HHeJ_G0018689.1 mouse_genomes_project 11 90371500 90590981 - MGP_C3HHeJ_P0031354 protein_coding protein_coding MGP_C3HHeJ_T0031355.1 MGP_C3HHeJ_G0018689.1 mouse_genomes_project 11 90371599 90493954 - MGP_C3HHeJ_P0031355 protein_coding protein_coding MGP_C3HHeJ_T0006099.1 MGP_C3HHeJ_G0005085.1 mouse_genomes_project 11 15467545 15475152 + Gm12018 lincRNA lincRNA MGP_C3HHeJ_T0030935.1 MGP_C3HHeJ_G0018581.1 mouse_genomes_project 11 82882232 82943675 + MGP_C3HHeJ_P0030935 Tmem132e protein_coding protein_coding MGP_C3HHeJ_T0030936.1 MGP_C3HHeJ_G0018581.1 mouse_genomes_project 11 82882232 82943680 + MGP_C3HHeJ_P0030936 Tmem132e protein_coding protein_coding MGP_C3HHeJ_T0030937.1 MGP_C3HHeJ_G0018581.1 mouse_genomes_project 11 82882455 82932071 + Tmem132e protein_coding processed_transcript MGP_C3HHeJ_T0030938.1 MGP_C3HHeJ_G0018581.1 mouse_genomes_project 11 82935604 82940247 + Tmem132e protein_coding retained_intron MGP_C3HHeJ_T0033658.1 MGP_C3HHeJ_G0019230.1 mouse_genomes_project 11 122134924 122162276 + MGP_C3HHeJ_P0033658 Slc26a11 protein_coding protein_coding MGP_C3HHeJ_T0033659.1 MGP_C3HHeJ_G0019230.1 mouse_genomes_project 11 122134955 122142503 + Slc26a11 protein_coding processed_transcript MGP_C3HHeJ_T0033660.1 MGP_C3HHeJ_G0019230.1 mouse_genomes_project 11 122134960 122151219 + Slc26a11 protein_coding processed_transcript MGP_C3HHeJ_T0033661.1 MGP_C3HHeJ_G0019230.1 mouse_genomes_project 11 122142896 122162246 + Slc26a11 protein_coding processed_transcript MGP_C3HHeJ_T0016923.1 MGP_C3HHeJ_G0014909.1 mouse_genomes_project 11 408076 408746 + Gm11947 processed_transcript processed_transcript MGP_C3HHeJ_T0012360.1 MGP_C3HHeJ_G0010464.1 mouse_genomes_project 11 3601316 3602810 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031295.1 MGP_C3HHeJ_G0018670.1 mouse_genomes_project 11 88706705 88707702 - MGP_C3HHeJ_P0031295 Olfr462 protein_coding protein_coding MGP_C3HHeJ_T0012412.1 MGP_C3HHeJ_G0010516.1 mouse_genomes_project 11 20128896 20129186 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003289.1 MGP_C3HHeJ_G0003034.1 mouse_genomes_project 11 123035401 123037313 - Gm11770 antisense antisense MGP_C3HHeJ_T0032983.1 MGP_C3HHeJ_G0019094.1 mouse_genomes_project 11 112419865 112498375 - MGP_C3HHeJ_P0032983 Abca6 protein_coding protein_coding MGP_C3HHeJ_T0032984.1 MGP_C3HHeJ_G0019094.1 mouse_genomes_project 11 112481615 112498375 - Abca6 protein_coding processed_transcript MGP_C3HHeJ_T0032777.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108306938 108311559 - MGP_C3HHeJ_P0032777 Smarcd2 protein_coding protein_coding MGP_C3HHeJ_T0032778.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108306938 108316731 - MGP_C3HHeJ_P0032778 Smarcd2 protein_coding protein_coding MGP_C3HHeJ_T0032779.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108307473 108309422 - Smarcd2 protein_coding retained_intron MGP_C3HHeJ_T0032780.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108307558 108308696 - Smarcd2 protein_coding retained_intron MGP_C3HHeJ_T0032781.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108307778 108309506 - MGP_C3HHeJ_P0032781 Smarcd2 protein_coding protein_coding MGP_C3HHeJ_T0032782.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108308492 108309831 - Smarcd2 protein_coding retained_intron MGP_C3HHeJ_T0032783.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108309071 108316724 - Smarcd2 protein_coding processed_transcript MGP_C3HHeJ_T0032784.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108309498 108311243 - Smarcd2 protein_coding processed_transcript MGP_C3HHeJ_T0032785.1 MGP_C3HHeJ_G0019052.1 mouse_genomes_project 11 108310650 108311288 - Smarcd2 protein_coding retained_intron MGP_C3HHeJ_T0031259.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88454283 88526345 + Rnf43 protein_coding retained_intron MGP_C3HHeJ_T0031260.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88454648 88513443 + Rnf43 protein_coding processed_transcript MGP_C3HHeJ_T0031261.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88456110 88530951 + MGP_C3HHeJ_P0031261 Rnf43 protein_coding protein_coding MGP_C3HHeJ_T0031262.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88456177 88530610 + MGP_C3HHeJ_P0031262 Rnf43 protein_coding protein_coding MGP_C3HHeJ_T0031263.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88522397 88526937 + Rnf43 protein_coding retained_intron MGP_C3HHeJ_T0031264.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88525784 88527524 + Rnf43 protein_coding retained_intron MGP_C3HHeJ_T0031265.1 MGP_C3HHeJ_G0018663.1 mouse_genomes_project 11 88530330 88530879 + Rnf43 protein_coding processed_transcript MGP_C3HHeJ_T0006166.1 MGP_C3HHeJ_G0005143.1 mouse_genomes_project 11 56771268 56773361 + Gm12243 lincRNA lincRNA MGP_C3HHeJ_T0027730.1 MGP_C3HHeJ_G0017775.1 mouse_genomes_project 11 3396208 3413699 + MGP_C3HHeJ_P0027730 Zmiz2 protein_coding protein_coding MGP_C3HHeJ_T0027731.1 MGP_C3HHeJ_G0017775.1 mouse_genomes_project 11 3396498 3413699 + MGP_C3HHeJ_P0027731 Zmiz2 protein_coding protein_coding MGP_C3HHeJ_T0027732.1 MGP_C3HHeJ_G0017775.1 mouse_genomes_project 11 3396605 3413699 + MGP_C3HHeJ_P0027732 Zmiz2 protein_coding protein_coding MGP_C3HHeJ_T0027733.1 MGP_C3HHeJ_G0017775.1 mouse_genomes_project 11 3402720 3413615 + MGP_C3HHeJ_P0027733 Zmiz2 protein_coding protein_coding MGP_C3HHeJ_T0027734.1 MGP_C3HHeJ_G0017775.1 mouse_genomes_project 11 3403137 3413471 + MGP_C3HHeJ_P0027734 Zmiz2 protein_coding protein_coding MGP_C3HHeJ_T0027735.1 MGP_C3HHeJ_G0017775.1 mouse_genomes_project 11 3404261 3405381 + Zmiz2 protein_coding retained_intron MGP_C3HHeJ_T0027646.1 MGP_C3HHeJ_G0017753.1 mouse_genomes_project 11 2156160 2227755 - MGP_C3HHeJ_P0027646 Kremen1 protein_coding protein_coding MGP_C3HHeJ_T0027647.1 MGP_C3HHeJ_G0017753.1 mouse_genomes_project 11 2169080 2203616 - MGP_C3HHeJ_P0027647 Kremen1 protein_coding protein_coding MGP_C3HHeJ_T0006191.1 MGP_C3HHeJ_G0005164.1 mouse_genomes_project 11 71000594 71002167 - 6330403K07Rik lincRNA lincRNA MGP_C3HHeJ_T0032181.1 MGP_C3HHeJ_G0018927.1 mouse_genomes_project 11 102794426 102801869 + MGP_C3HHeJ_P0032181 Naglu protein_coding protein_coding MGP_C3HHeJ_T0032182.1 MGP_C3HHeJ_G0018927.1 mouse_genomes_project 11 102795966 102800768 + Naglu protein_coding processed_transcript MGP_C3HHeJ_T0032183.1 MGP_C3HHeJ_G0018927.1 mouse_genomes_project 11 102796370 102801003 + Naglu protein_coding processed_transcript MGP_C3HHeJ_T0009603.1 MGP_C3HHeJ_G0007736.1 mouse_genomes_project 11 60199647 60199711 + Mir5100 miRNA miRNA MGP_C3HHeJ_T0027913.1 MGP_C3HHeJ_G0017820.1 mouse_genomes_project 11 17643049 17666665 - MGP_C3HHeJ_P0027913 Cep68 protein_coding protein_coding MGP_C3HHeJ_T0027914.1 MGP_C3HHeJ_G0017820.1 mouse_genomes_project 11 17655271 17666665 - MGP_C3HHeJ_P0027914 Cep68 protein_coding protein_coding MGP_C3HHeJ_T0027915.1 MGP_C3HHeJ_G0017820.1 mouse_genomes_project 11 17655272 17666676 - MGP_C3HHeJ_P0027915 Cep68 protein_coding protein_coding MGP_C3HHeJ_T0027916.1 MGP_C3HHeJ_G0017820.1 mouse_genomes_project 11 17658405 17666630 - Cep68 protein_coding retained_intron MGP_C3HHeJ_T0006239.1 MGP_C3HHeJ_G0005197.1 mouse_genomes_project 11 90237323 90248025 + Gm2018 lincRNA lincRNA MGP_C3HHeJ_T0032362.1 MGP_C3HHeJ_G0018967.1 mouse_genomes_project 11 103813056 103821007 + MGP_C3HHeJ_P0032362 1700006E09Rik protein_coding protein_coding MGP_C3HHeJ_T0032363.1 MGP_C3HHeJ_G0018967.1 mouse_genomes_project 11 103813061 103819601 + MGP_C3HHeJ_P0032363 1700006E09Rik protein_coding protein_coding MGP_C3HHeJ_T0032364.1 MGP_C3HHeJ_G0018967.1 mouse_genomes_project 11 103815830 103821015 + MGP_C3HHeJ_P0032364 1700006E09Rik protein_coding protein_coding MGP_C3HHeJ_T0031542.1 MGP_C3HHeJ_G0018734.1 mouse_genomes_project 11 96538303 96546052 + MGP_C3HHeJ_P0031542 Tac4 protein_coding protein_coding MGP_C3HHeJ_T0028043.1 MGP_C3HHeJ_G0017849.1 mouse_genomes_project 11 21614480 21640223 - MGP_C3HHeJ_P0028043 A830031A19Rik protein_coding protein_coding MGP_C3HHeJ_T0033739.1 MGP_C3HHeJ_G0019242.1 mouse_genomes_project 11 123053285 123113543 + MGP_C3HHeJ_P0033739 Bahcc1 protein_coding protein_coding MGP_C3HHeJ_T0033740.1 MGP_C3HHeJ_G0019242.1 mouse_genomes_project 11 123053285 123115695 + MGP_C3HHeJ_P0033740 Bahcc1 protein_coding protein_coding MGP_C3HHeJ_T0033741.1 MGP_C3HHeJ_G0019242.1 mouse_genomes_project 11 123056779 123057619 + Bahcc1 protein_coding processed_transcript MGP_C3HHeJ_T0033742.1 MGP_C3HHeJ_G0019242.1 mouse_genomes_project 11 123057033 123113543 + MGP_C3HHeJ_P0033742 Bahcc1 protein_coding protein_coding MGP_C3HHeJ_T0027799.1 MGP_C3HHeJ_G0017793.1 mouse_genomes_project 11 6159463 6179460 + MGP_C3HHeJ_P0027799 Gm11992 protein_coding unknown_likely_coding MGP_C3HHeJ_T0030470.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75792157 75812456 + MGP_C3HHeJ_P0030470 Inpp5k protein_coding protein_coding MGP_C3HHeJ_T0030471.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75792198 75812448 + Inpp5k protein_coding retained_intron MGP_C3HHeJ_T0030472.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75792206 75796440 + Inpp5k protein_coding retained_intron MGP_C3HHeJ_T0030473.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75792224 75812450 + MGP_C3HHeJ_P0030473 Inpp5k protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030474.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75800268 75810860 + Inpp5k protein_coding retained_intron MGP_C3HHeJ_T0030475.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75810369 75811315 + Inpp5k protein_coding processed_transcript MGP_C3HHeJ_T0030476.1 MGP_C3HHeJ_G0018472.1 mouse_genomes_project 11 75810429 75811448 + MGP_C3HHeJ_P0030476 Inpp5k protein_coding protein_coding MGP_C3HHeJ_T0012561.1 MGP_C3HHeJ_G0010665.1 mouse_genomes_project 11 78890799 78891081 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009652.1 MGP_C3HHeJ_G0007785.1 mouse_genomes_project 11 98530307 98530363 - Mir7235 miRNA miRNA MGP_C3HHeJ_T0028319.1 MGP_C3HHeJ_G0017916.1 mouse_genomes_project 11 39013223 39047012 - MGP_C3HHeJ_P0028319 Hmmr protein_coding protein_coding MGP_C3HHeJ_T0028320.1 MGP_C3HHeJ_G0017916.1 mouse_genomes_project 11 39032722 39047006 - Hmmr protein_coding processed_transcript MGP_C3HHeJ_T0028321.1 MGP_C3HHeJ_G0017916.1 mouse_genomes_project 11 39034685 39047006 - Hmmr protein_coding processed_transcript MGP_C3HHeJ_T0028322.1 MGP_C3HHeJ_G0017916.1 mouse_genomes_project 11 39036556 39046981 - Hmmr protein_coding processed_transcript MGP_C3HHeJ_T0028598.1 MGP_C3HHeJ_G0017997.1 mouse_genomes_project 11 49046744 49084321 - MGP_C3HHeJ_P0028598 Maml1 protein_coding protein_coding MGP_C3HHeJ_T0032519.1 MGP_C3HHeJ_G0018991.1 mouse_genomes_project 11 104475080 104478762 + MGP_C3HHeJ_P0032519 Fzd2 protein_coding protein_coding MGP_C3HHeJ_T0028382.1 MGP_C3HHeJ_G0017932.1 mouse_genomes_project 11 42122446 42141331 - MGP_C3HHeJ_P0028382 Ttc1 protein_coding protein_coding MGP_C3HHeJ_T0028383.1 MGP_C3HHeJ_G0017932.1 mouse_genomes_project 11 42122943 42141305 - MGP_C3HHeJ_P0028383 Ttc1 protein_coding protein_coding MGP_C3HHeJ_T0028384.1 MGP_C3HHeJ_G0017932.1 mouse_genomes_project 11 42137941 42141315 - Ttc1 protein_coding processed_transcript MGP_C3HHeJ_T0029143.1 MGP_C3HHeJ_G0018163.1 mouse_genomes_project 11 59341809 59343569 - MGP_C3HHeJ_P0029143 Rasd1 protein_coding protein_coding MGP_C3HHeJ_T0098266.1 MGP_C3HHeJ_G0036478.1 mouse_genomes_project 11 17077682 17077826 - Gm23386 scaRNA scaRNA MGP_C3HHeJ_T0031775.1 MGP_C3HHeJ_G0018794.1 mouse_genomes_project 11 99176971 99182661 - Cwc25 protein_coding processed_transcript MGP_C3HHeJ_T0031776.1 MGP_C3HHeJ_G0018794.1 mouse_genomes_project 11 99177105 99198545 - MGP_C3HHeJ_P0031776 Cwc25 protein_coding protein_coding MGP_C3HHeJ_T0031777.1 MGP_C3HHeJ_G0018794.1 mouse_genomes_project 11 99179158 99183871 - MGP_C3HHeJ_P0031777 Cwc25 protein_coding protein_coding MGP_C3HHeJ_T0031778.1 MGP_C3HHeJ_G0018794.1 mouse_genomes_project 11 99188254 99198529 - MGP_C3HHeJ_P0031778 Cwc25 protein_coding protein_coding MGP_C3HHeJ_T0000815.1 MGP_C3HHeJ_G0000756.1 mouse_genomes_project 11 29596584 29596959 + TEC TEC MGP_C3HHeJ_T0030314.1 MGP_C3HHeJ_G0018423.1 mouse_genomes_project 11 73660760 73663069 + MGP_C3HHeJ_P0030314 Olfr384 protein_coding protein_coding MGP_C3HHeJ_T0033269.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118455805 118490883 + MGP_C3HHeJ_P0033269 Myo15b protein_coding protein_coding MGP_C3HHeJ_T0033270.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118475106 118477768 + Myo15b protein_coding processed_transcript MGP_C3HHeJ_T0033271.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118475124 118478890 + MGP_C3HHeJ_P0033271 Myo15b protein_coding protein_coding MGP_C3HHeJ_T0033272.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118478037 118485771 + MGP_C3HHeJ_P0033272 Myo15b protein_coding protein_coding MGP_C3HHeJ_T0033273.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118484763 118485772 + MGP_C3HHeJ_P0033273 Myo15b protein_coding protein_coding MGP_C3HHeJ_T0033274.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118485132 118490879 + Myo15b protein_coding retained_intron MGP_C3HHeJ_T0033275.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118485926 118490894 + MGP_C3HHeJ_P0033275 Myo15b protein_coding protein_coding MGP_C3HHeJ_T0033276.1 MGP_C3HHeJ_G0019152.1 mouse_genomes_project 11 118488529 118489460 + Myo15b protein_coding retained_intron MGP_C3HHeJ_T0029944.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70113417 70117079 + MGP_C3HHeJ_P0029944 Slc16a11 protein_coding protein_coding MGP_C3HHeJ_T0029945.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114575 70117078 + MGP_C3HHeJ_P0029945 Slc16a11 protein_coding protein_coding MGP_C3HHeJ_T0029946.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114664 70115520 + Slc16a11 protein_coding retained_intron MGP_C3HHeJ_T0029947.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114745 70117079 + MGP_C3HHeJ_P0029947 Slc16a11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029948.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114780 70117080 + MGP_C3HHeJ_P0029948 Slc16a11 protein_coding protein_coding MGP_C3HHeJ_T0029949.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114784 70117083 + MGP_C3HHeJ_P0029949 Slc16a11 protein_coding protein_coding MGP_C3HHeJ_T0029950.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114784 70116198 + MGP_C3HHeJ_P0029950 Slc16a11 protein_coding protein_coding MGP_C3HHeJ_T0029951.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114786 70115653 + MGP_C3HHeJ_P0029951 Slc16a11 protein_coding protein_coding MGP_C3HHeJ_T0029952.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70114787 70116341 + Slc16a11 protein_coding processed_transcript MGP_C3HHeJ_T0029953.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70115227 70116146 + Slc16a11 protein_coding retained_intron MGP_C3HHeJ_T0029954.1 MGP_C3HHeJ_G0018337.1 mouse_genomes_project 11 70115483 70117079 + Slc16a11 protein_coding retained_intron MGP_C3HHeJ_T0031009.1 MGP_C3HHeJ_G0018602.1 mouse_genomes_project 11 84033042 84036347 + MGP_C3HHeJ_P0031009 1700020L24Rik protein_coding protein_coding MGP_C3HHeJ_T0031010.1 MGP_C3HHeJ_G0018602.1 mouse_genomes_project 11 84035400 84035942 + MGP_C3HHeJ_P0031010 1700020L24Rik protein_coding protein_coding MGP_C3HHeJ_T0029647.1 MGP_C3HHeJ_G0018268.1 mouse_genomes_project 11 68869293 68871155 + MGP_C3HHeJ_P0029647 Borcs6 protein_coding protein_coding MGP_C3HHeJ_T0028705.1 MGP_C3HHeJ_G0018023.1 mouse_genomes_project 11 50547317 50558269 - MGP_C3HHeJ_P0028705 N4bp3 protein_coding protein_coding MGP_C3HHeJ_T0028706.1 MGP_C3HHeJ_G0018023.1 mouse_genomes_project 11 50549808 50558264 - MGP_C3HHeJ_P0028706 N4bp3 protein_coding protein_coding MGP_C3HHeJ_T0028707.1 MGP_C3HHeJ_G0018023.1 mouse_genomes_project 11 50549873 50558247 - MGP_C3HHeJ_P0028707 N4bp3 protein_coding protein_coding MGP_C3HHeJ_T0033985.1 MGP_C3HHeJ_G0019293.1 mouse_genomes_project 11 124144101 124201997 + MGP_C3HHeJ_P0033985 Foxk2 protein_coding protein_coding MGP_C3HHeJ_T0033986.1 MGP_C3HHeJ_G0019293.1 mouse_genomes_project 11 124181382 124187728 + Foxk2 protein_coding processed_transcript MGP_C3HHeJ_T0033987.1 MGP_C3HHeJ_G0019293.1 mouse_genomes_project 11 124189141 124191360 + Foxk2 protein_coding retained_intron MGP_C3HHeJ_T0033397.1 MGP_C3HHeJ_G0019177.1 mouse_genomes_project 11 119068656 119083039 - MGP_C3HHeJ_P0033397 Qrich2 protein_coding protein_coding MGP_C3HHeJ_T0033398.1 MGP_C3HHeJ_G0019177.1 mouse_genomes_project 11 119068658 119083929 - MGP_C3HHeJ_P0033398 Qrich2 protein_coding protein_coding MGP_C3HHeJ_T0033399.1 MGP_C3HHeJ_G0019177.1 mouse_genomes_project 11 119071833 119075666 - Qrich2 protein_coding retained_intron MGP_C3HHeJ_T0033643.1 MGP_C3HHeJ_G0019227.1 mouse_genomes_project 11 122064775 122076418 - MGP_C3HHeJ_P0033643 Eif4a3 protein_coding protein_coding MGP_C3HHeJ_T0033644.1 MGP_C3HHeJ_G0019227.1 mouse_genomes_project 11 122064776 122065490 - Eif4a3 protein_coding processed_transcript MGP_C3HHeJ_T0033645.1 MGP_C3HHeJ_G0019227.1 mouse_genomes_project 11 122064776 122065424 - Eif4a3 protein_coding processed_transcript MGP_C3HHeJ_T0033646.1 MGP_C3HHeJ_G0019227.1 mouse_genomes_project 11 122068791 122069866 - Eif4a3 protein_coding processed_transcript MGP_C3HHeJ_T0033647.1 MGP_C3HHeJ_G0019227.1 mouse_genomes_project 11 122069138 122076343 - MGP_C3HHeJ_P0033647 Eif4a3 protein_coding protein_coding MGP_C3HHeJ_T0033648.1 MGP_C3HHeJ_G0019227.1 mouse_genomes_project 11 122074129 122076347 - Eif4a3 protein_coding processed_transcript MGP_C3HHeJ_T0003154.1 MGP_C3HHeJ_G0002925.1 mouse_genomes_project 11 69540236 69551202 + Tnfsf13os antisense antisense MGP_C3HHeJ_T0003155.1 MGP_C3HHeJ_G0002925.1 mouse_genomes_project 11 69542806 69551579 + Tnfsf13os antisense antisense MGP_C3HHeJ_T0003156.1 MGP_C3HHeJ_G0002925.1 mouse_genomes_project 11 69542978 69551579 + Tnfsf13os antisense antisense MGP_C3HHeJ_T0032386.1 MGP_C3HHeJ_G0018972.1 mouse_genomes_project 11 103937373 103938520 - MGP_C3HHeJ_P0032386 Pyy protein_coding protein_coding MGP_C3HHeJ_T0032387.1 MGP_C3HHeJ_G0018972.1 mouse_genomes_project 11 103937373 103938530 - MGP_C3HHeJ_P0032387 Pyy protein_coding protein_coding MGP_C3HHeJ_T0032388.1 MGP_C3HHeJ_G0018972.1 mouse_genomes_project 11 103937377 103938114 - MGP_C3HHeJ_P0032388 Pyy protein_coding protein_coding MGP_C3HHeJ_T0032389.1 MGP_C3HHeJ_G0018972.1 mouse_genomes_project 11 103937658 103938530 - Pyy protein_coding retained_intron MGP_C3HHeJ_T0101658.1 MGP_C3HHeJ_G0039624.1 mouse_genomes_project 11 101242481 101242691 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006182.1 MGP_C3HHeJ_G0005158.1 mouse_genomes_project 11 64931856 64942763 - Gm12295 lincRNA lincRNA MGP_C3HHeJ_T0006183.1 MGP_C3HHeJ_G0005158.1 mouse_genomes_project 11 64940867 65026622 - Gm12295 lincRNA lincRNA MGP_C3HHeJ_T0032786.1 MGP_C3HHeJ_G0019053.1 mouse_genomes_project 11 108320430 108332117 + MGP_C3HHeJ_P0032786 Tcam1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032787.1 MGP_C3HHeJ_G0019053.1 mouse_genomes_project 11 108320506 108332729 + MGP_C3HHeJ_P0032787 Tcam1 protein_coding protein_coding MGP_C3HHeJ_T0003128.1 MGP_C3HHeJ_G0002904.1 mouse_genomes_project 11 62180687 62182670 + Lrrc75aos2 antisense antisense MGP_C3HHeJ_T0003129.1 MGP_C3HHeJ_G0002904.1 mouse_genomes_project 11 62180688 62181945 + Lrrc75aos2 antisense antisense MGP_C3HHeJ_T0027454.1 MGP_C3HHeJ_G0017713.1 mouse_genomes_project 11 364800 375815 - MGP_C3HHeJ_P0027454 protein_coding unknown_likely_coding MGP_C3HHeJ_T0027455.1 MGP_C3HHeJ_G0017713.1 mouse_genomes_project 11 364809 375199 - MGP_C3HHeJ_P0027455 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027456.1 MGP_C3HHeJ_G0017713.1 mouse_genomes_project 11 364809 375202 - MGP_C3HHeJ_P0027456 protein_coding non_stop_decay MGP_C3HHeJ_T0027457.1 MGP_C3HHeJ_G0017713.1 mouse_genomes_project 11 364809 372562 - MGP_C3HHeJ_P0027457 protein_coding protein_coding MGP_C3HHeJ_T0027458.1 MGP_C3HHeJ_G0017713.1 mouse_genomes_project 11 364974 375214 - MGP_C3HHeJ_P0027458 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027459.1 MGP_C3HHeJ_G0017713.1 mouse_genomes_project 11 369370 375227 - MGP_C3HHeJ_P0027459 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006161.1 MGP_C3HHeJ_G0005139.1 mouse_genomes_project 11 50078015 50111480 - lincRNA lincRNA MGP_C3HHeJ_T0006162.1 MGP_C3HHeJ_G0005139.1 mouse_genomes_project 11 50078433 50110588 - lincRNA lincRNA MGP_C3HHeJ_T0009617.1 MGP_C3HHeJ_G0007750.1 mouse_genomes_project 11 70135419 70135503 + Mir497 miRNA miRNA MGP_C3HHeJ_T0028793.1 MGP_C3HHeJ_G0018047.1 mouse_genomes_project 11 52507125 52510827 - MGP_C3HHeJ_P0028793 Sowaha protein_coding protein_coding MGP_C3HHeJ_T0017014.1 MGP_C3HHeJ_G0014956.1 mouse_genomes_project 11 97163780 97165952 + 4833417C18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012347.1 MGP_C3HHeJ_G0010451.1 mouse_genomes_project 11 575494 576391 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027396.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 49642 101052 + MGP_C3HHeJ_P0027396 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027397.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52032 77989 + Eif4enif1 protein_coding retained_intron MGP_C3HHeJ_T0027398.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52032 101059 + MGP_C3HHeJ_P0027398 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027399.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52058 62804 + Eif4enif1 protein_coding retained_intron MGP_C3HHeJ_T0027400.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52103 76204 + MGP_C3HHeJ_P0027400 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027401.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52364 101056 + MGP_C3HHeJ_P0027401 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027402.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52390 101058 + MGP_C3HHeJ_P0027402 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027403.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 52999 101057 + MGP_C3HHeJ_P0027403 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027404.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 83427 86681 + Eif4enif1 protein_coding retained_intron MGP_C3HHeJ_T0027405.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 83427 86644 + Eif4enif1 protein_coding retained_intron MGP_C3HHeJ_T0027406.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 83473 95930 + MGP_C3HHeJ_P0027406 Eif4enif1 protein_coding protein_coding MGP_C3HHeJ_T0027407.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 90699 97446 + Eif4enif1 protein_coding retained_intron MGP_C3HHeJ_T0027408.1 MGP_C3HHeJ_G0017706.1 mouse_genomes_project 11 92025 95912 + Eif4enif1 protein_coding retained_intron MGP_C3HHeJ_T0029938.1 MGP_C3HHeJ_G0018334.1 mouse_genomes_project 11 69985192 69997890 + MGP_C3HHeJ_P0029938 Asgr2 protein_coding protein_coding MGP_C3HHeJ_T0029939.1 MGP_C3HHeJ_G0018334.1 mouse_genomes_project 11 69985514 69998360 + MGP_C3HHeJ_P0029939 Asgr2 protein_coding protein_coding MGP_C3HHeJ_T0029940.1 MGP_C3HHeJ_G0018334.1 mouse_genomes_project 11 69990136 69998335 + Asgr2 protein_coding retained_intron MGP_C3HHeJ_T0032037.1 MGP_C3HHeJ_G0018891.1 mouse_genomes_project 11 101748258 101751878 - MGP_C3HHeJ_P0032037 Krt36 protein_coding protein_coding MGP_C3HHeJ_T0009629.1 MGP_C3HHeJ_G0007762.1 mouse_genomes_project 11 75615842 75615937 + Mir22 miRNA miRNA MGP_C3HHeJ_T0017063.1 MGP_C3HHeJ_G0014981.1 mouse_genomes_project 11 120299915 120302497 + 2900041M22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012582.1 MGP_C3HHeJ_G0010686.1 mouse_genomes_project 11 87370026 87370625 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033283.1 MGP_C3HHeJ_G0019154.1 mouse_genomes_project 11 118498255 118504562 + MGP_C3HHeJ_P0033283 Smim5 protein_coding protein_coding MGP_C3HHeJ_T0033284.1 MGP_C3HHeJ_G0019154.1 mouse_genomes_project 11 118498467 118504189 + MGP_C3HHeJ_P0033284 Smim5 protein_coding protein_coding MGP_C3HHeJ_T0033285.1 MGP_C3HHeJ_G0019154.1 mouse_genomes_project 11 118498491 118504006 + MGP_C3HHeJ_P0033285 Smim5 protein_coding protein_coding MGP_C3HHeJ_T0012397.1 MGP_C3HHeJ_G0010501.1 mouse_genomes_project 11 17713459 17713780 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012560.1 MGP_C3HHeJ_G0010664.1 mouse_genomes_project 11 78451616 78453608 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031357.1 MGP_C3HHeJ_G0018691.1 mouse_genomes_project 11 90978879 90985032 + MGP_C3HHeJ_P0031357 Tmem100 protein_coding protein_coding MGP_C3HHeJ_T0012411.1 MGP_C3HHeJ_G0010515.1 mouse_genomes_project 11 19883344 19885249 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028142.1 MGP_C3HHeJ_G0017867.1 mouse_genomes_project 11 27603494 27608887 - MGP_C3HHeJ_P0028142 protein_coding protein_coding MGP_C3HHeJ_T0017033.1 MGP_C3HHeJ_G0014969.1 mouse_genomes_project 11 102093694 102094439 + Gm12348 processed_transcript processed_transcript MGP_C3HHeJ_T0101343.1 MGP_C3HHeJ_G0039419.1 mouse_genomes_project 11 2747254 2768735 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101344.1 MGP_C3HHeJ_G0039419.1 mouse_genomes_project 11 2747275 2769099 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101345.1 MGP_C3HHeJ_G0039419.1 mouse_genomes_project 11 2747275 2771569 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101346.1 MGP_C3HHeJ_G0039419.1 mouse_genomes_project 11 2747342 2770796 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101347.1 MGP_C3HHeJ_G0039419.1 mouse_genomes_project 11 2751515 2771287 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0032935.1 MGP_C3HHeJ_G0019082.1 mouse_genomes_project 11 111573522 111617188 + MGP_C3HHeJ_P0032935 Gna13 protein_coding protein_coding MGP_C3HHeJ_T0032936.1 MGP_C3HHeJ_G0019082.1 mouse_genomes_project 11 111573522 111591114 + MGP_C3HHeJ_P0032936 Gna13 protein_coding protein_coding MGP_C3HHeJ_T0030846.1 MGP_C3HHeJ_G0018555.1 mouse_genomes_project 11 79984700 80097193 + MGP_C3HHeJ_P0030846 Rab11fip4 protein_coding protein_coding MGP_C3HHeJ_T0030847.1 MGP_C3HHeJ_G0018555.1 mouse_genomes_project 11 80056836 80079769 + MGP_C3HHeJ_P0030847 Rab11fip4 protein_coding protein_coding MGP_C3HHeJ_T0032226.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102982765 102984988 + MGP_C3HHeJ_P0032226 Ramp2 protein_coding protein_coding MGP_C3HHeJ_T0032227.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983049 102984422 + Ramp2 protein_coding retained_intron MGP_C3HHeJ_T0032228.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983128 102997776 + MGP_C3HHeJ_P0032228 Ramp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032229.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983166 102984988 + MGP_C3HHeJ_P0032229 Ramp2 protein_coding protein_coding MGP_C3HHeJ_T0032230.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983169 102984988 + MGP_C3HHeJ_P0032230 Ramp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032231.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983304 102984374 + MGP_C3HHeJ_P0032231 Ramp2 protein_coding protein_coding MGP_C3HHeJ_T0032232.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983670 102984988 + Ramp2 protein_coding retained_intron MGP_C3HHeJ_T0032233.1 MGP_C3HHeJ_G0018939.1 mouse_genomes_project 11 102983830 102984802 + MGP_C3HHeJ_P0032233 Ramp2 protein_coding protein_coding MGP_C3HHeJ_T0029029.1 MGP_C3HHeJ_G0018121.1 mouse_genomes_project 11 58014873 58016878 - MGP_C3HHeJ_P0029029 protein_coding protein_coding MGP_C3HHeJ_T0006275.1 MGP_C3HHeJ_G0005225.1 mouse_genomes_project 11 115205851 115206945 + 4933434M16Rik lincRNA lincRNA MGP_C3HHeJ_T0006276.1 MGP_C3HHeJ_G0005225.1 mouse_genomes_project 11 115205876 115214251 + 4933434M16Rik lincRNA lincRNA MGP_C3HHeJ_T0003256.1 MGP_C3HHeJ_G0003006.1 mouse_genomes_project 11 109455274 109462029 + Gm11716 antisense antisense MGP_C3HHeJ_T0009675.1 MGP_C3HHeJ_G0007808.1 mouse_genomes_project 11 109781517 109781575 + Mir6932 miRNA miRNA MGP_C3HHeJ_T0003115.1 MGP_C3HHeJ_G0002893.1 mouse_genomes_project 11 59139977 59145096 - Gm12264 antisense antisense MGP_C3HHeJ_T0027917.1 MGP_C3HHeJ_G0017821.1 mouse_genomes_project 11 17728755 17758017 - MGP_C3HHeJ_P0027917 Slc1a4 protein_coding protein_coding MGP_C3HHeJ_T0032102.1 MGP_C3HHeJ_G0018911.1 mouse_genomes_project 11 102274178 102281003 + MGP_C3HHeJ_P0032102 Cnp protein_coding protein_coding MGP_C3HHeJ_T0032103.1 MGP_C3HHeJ_G0018911.1 mouse_genomes_project 11 102274386 102275725 + Cnp protein_coding processed_transcript MGP_C3HHeJ_T0032104.1 MGP_C3HHeJ_G0018911.1 mouse_genomes_project 11 102274798 102281003 + Cnp protein_coding processed_transcript MGP_C3HHeJ_T0032105.1 MGP_C3HHeJ_G0018911.1 mouse_genomes_project 11 102275165 102290959 + Cnp protein_coding processed_transcript MGP_C3HHeJ_T0030927.1 MGP_C3HHeJ_G0018576.1 mouse_genomes_project 11 82532733 82534547 + MGP_C3HHeJ_P0030927 Ccl7 protein_coding protein_coding MGP_C3HHeJ_T0029731.1 MGP_C3HHeJ_G0018290.1 mouse_genomes_project 11 69404223 69406388 - Wrap53 protein_coding processed_transcript MGP_C3HHeJ_T0029732.1 MGP_C3HHeJ_G0018290.1 mouse_genomes_project 11 69404224 69421787 - MGP_C3HHeJ_P0029732 Wrap53 protein_coding protein_coding MGP_C3HHeJ_T0029733.1 MGP_C3HHeJ_G0018290.1 mouse_genomes_project 11 69420170 69422718 - MGP_C3HHeJ_P0029733 Wrap53 protein_coding protein_coding MGP_C3HHeJ_T0028541.1 MGP_C3HHeJ_G0017981.1 mouse_genomes_project 11 48164390 48165326 + MGP_C3HHeJ_P0028541 Olfr1387 protein_coding protein_coding MGP_C3HHeJ_T0012395.1 MGP_C3HHeJ_G0010499.1 mouse_genomes_project 11 17172000 17172832 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016994.1 MGP_C3HHeJ_G0014947.1 mouse_genomes_project 11 75966491 75998714 + Gm12339 processed_transcript antisense MGP_C3HHeJ_T0016995.1 MGP_C3HHeJ_G0014947.1 mouse_genomes_project 11 75966943 75998732 + Gm12339 processed_transcript processed_transcript MGP_C3HHeJ_T0012564.1 MGP_C3HHeJ_G0010668.1 mouse_genomes_project 11 79569658 79570106 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030312.1 MGP_C3HHeJ_G0018421.1 mouse_genomes_project 11 73568679 73569618 - MGP_C3HHeJ_P0030312 Olfr382 protein_coding protein_coding MGP_C3HHeJ_T0098795.1 MGP_C3HHeJ_G0036989.1 mouse_genomes_project 11 80033794 80033902 - Gm24887 snRNA snRNA MGP_C3HHeJ_T0012648.1 MGP_C3HHeJ_G0010752.1 mouse_genomes_project 11 117413714 117414169 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012394.1 MGP_C3HHeJ_G0010498.1 mouse_genomes_project 11 17135892 17136537 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028875.1 MGP_C3HHeJ_G0018066.1 mouse_genomes_project 11 53479056 53524526 + Meikin protein_coding retained_intron MGP_C3HHeJ_T0028876.1 MGP_C3HHeJ_G0018066.1 mouse_genomes_project 11 53479056 53524561 + MGP_C3HHeJ_P0028876 Meikin protein_coding protein_coding MGP_C3HHeJ_T0032035.1 MGP_C3HHeJ_G0018890.1 mouse_genomes_project 11 101738519 101742477 - MGP_C3HHeJ_P0032035 Krt35 protein_coding protein_coding MGP_C3HHeJ_T0032036.1 MGP_C3HHeJ_G0018890.1 mouse_genomes_project 11 101738521 101742493 - Krt35 protein_coding retained_intron MGP_C3HHeJ_T0029955.1 MGP_C3HHeJ_G0018338.1 mouse_genomes_project 11 70117454 70121661 - MGP_C3HHeJ_P0029955 Slc16a13 protein_coding protein_coding MGP_C3HHeJ_T0029956.1 MGP_C3HHeJ_G0018338.1 mouse_genomes_project 11 70119403 70121475 - MGP_C3HHeJ_P0029956 Slc16a13 protein_coding protein_coding MGP_C3HHeJ_T0029957.1 MGP_C3HHeJ_G0018338.1 mouse_genomes_project 11 70119841 70121731 - MGP_C3HHeJ_P0029957 Slc16a13 protein_coding protein_coding MGP_C3HHeJ_T0029958.1 MGP_C3HHeJ_G0018338.1 mouse_genomes_project 11 70119954 70121451 - MGP_C3HHeJ_P0029958 Slc16a13 protein_coding protein_coding MGP_C3HHeJ_T0032487.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104282349 104289810 + MGP_C3HHeJ_P0032487 Grn protein_coding protein_coding MGP_C3HHeJ_T0032488.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104282552 104287445 + MGP_C3HHeJ_P0032488 Grn protein_coding protein_coding MGP_C3HHeJ_T0032489.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104285783 104287256 + Grn protein_coding retained_intron MGP_C3HHeJ_T0032490.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104286930 104287594 + Grn protein_coding retained_intron MGP_C3HHeJ_T0032491.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104287097 104288263 + Grn protein_coding retained_intron MGP_C3HHeJ_T0032492.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104287100 104287892 + Grn protein_coding retained_intron MGP_C3HHeJ_T0032493.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104287718 104288945 + Grn protein_coding retained_intron MGP_C3HHeJ_T0032494.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104288285 104289574 + MGP_C3HHeJ_P0032494 Grn protein_coding protein_coding MGP_C3HHeJ_T0032495.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104288306 104289065 + Grn protein_coding retained_intron MGP_C3HHeJ_T0032496.1 MGP_C3HHeJ_G0018986.1 mouse_genomes_project 11 104288416 104290028 + MGP_C3HHeJ_P0032496 Grn protein_coding protein_coding MGP_C3HHeJ_T0028199.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30129944 30142690 - MGP_C3HHeJ_P0028199 Rhbdf1 protein_coding protein_coding MGP_C3HHeJ_T0028200.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30129945 30137685 - Rhbdf1 protein_coding retained_intron MGP_C3HHeJ_T0028201.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30129946 30142670 - MGP_C3HHeJ_P0028201 Rhbdf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028202.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30130163 30131500 - MGP_C3HHeJ_P0028202 Rhbdf1 protein_coding protein_coding MGP_C3HHeJ_T0028203.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30130309 30131261 - Rhbdf1 protein_coding retained_intron MGP_C3HHeJ_T0028204.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30130759 30131631 - Rhbdf1 protein_coding retained_intron MGP_C3HHeJ_T0028205.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30134646 30142670 - MGP_C3HHeJ_P0028205 Rhbdf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028206.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30135425 30142634 - MGP_C3HHeJ_P0028206 Rhbdf1 protein_coding protein_coding MGP_C3HHeJ_T0028207.1 MGP_C3HHeJ_G0017883.1 mouse_genomes_project 11 30136359 30142649 - MGP_C3HHeJ_P0028207 Rhbdf1 protein_coding protein_coding MGP_C3HHeJ_T0016946.1 MGP_C3HHeJ_G0014918.1 mouse_genomes_project 11 20367739 20370058 + 9130230N09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0033022.1 MGP_C3HHeJ_G0019103.1 mouse_genomes_project 11 116112391 116125700 + MGP_C3HHeJ_P0033022 D11Wsu47e protein_coding protein_coding MGP_C3HHeJ_T0033023.1 MGP_C3HHeJ_G0019103.1 mouse_genomes_project 11 116112419 116117566 + MGP_C3HHeJ_P0033023 D11Wsu47e protein_coding protein_coding MGP_C3HHeJ_T0033024.1 MGP_C3HHeJ_G0019103.1 mouse_genomes_project 11 116112426 116125700 + MGP_C3HHeJ_P0033024 D11Wsu47e protein_coding protein_coding MGP_C3HHeJ_T0033025.1 MGP_C3HHeJ_G0019103.1 mouse_genomes_project 11 116113065 116117481 + MGP_C3HHeJ_P0033025 D11Wsu47e protein_coding protein_coding MGP_C3HHeJ_T0031110.1 MGP_C3HHeJ_G0018630.1 mouse_genomes_project 11 85589659 85595654 - MGP_C3HHeJ_P0031110 Znhit3 protein_coding protein_coding MGP_C3HHeJ_T0031111.1 MGP_C3HHeJ_G0018630.1 mouse_genomes_project 11 85589942 85595637 - Znhit3 protein_coding processed_transcript MGP_C3HHeJ_T0031112.1 MGP_C3HHeJ_G0018630.1 mouse_genomes_project 11 85590256 85595654 - Znhit3 protein_coding processed_transcript MGP_C3HHeJ_T0031113.1 MGP_C3HHeJ_G0018630.1 mouse_genomes_project 11 85590292 85595593 - Znhit3 protein_coding processed_transcript MGP_C3HHeJ_T0031114.1 MGP_C3HHeJ_G0018630.1 mouse_genomes_project 11 85594726 85595612 - Znhit3 protein_coding retained_intron MGP_C3HHeJ_T0029920.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69903120 69932125 + MGP_C3HHeJ_P0029920 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029921.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69903276 69918077 + MGP_C3HHeJ_P0029921 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029922.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69903310 69913882 + Dlg4 protein_coding processed_transcript MGP_C3HHeJ_T0029923.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69904501 69932125 + MGP_C3HHeJ_P0029923 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029924.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69904737 69932125 + MGP_C3HHeJ_P0029924 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029925.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69904873 69917973 + MGP_C3HHeJ_P0029925 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029926.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69909830 69917955 + MGP_C3HHeJ_P0029926 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029927.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69913643 69917815 + MGP_C3HHeJ_P0029927 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029928.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69916565 69925713 + MGP_C3HHeJ_P0029928 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029929.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69916846 69917734 + MGP_C3HHeJ_P0029929 Dlg4 protein_coding protein_coding MGP_C3HHeJ_T0029930.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69917460 69918558 + Dlg4 protein_coding retained_intron MGP_C3HHeJ_T0029931.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69926491 69931205 + MGP_C3HHeJ_P0029931 Dlg4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029932.1 MGP_C3HHeJ_G0018332.1 mouse_genomes_project 11 69930782 69931304 + Dlg4 protein_coding retained_intron MGP_C3HHeJ_T0006172.1 MGP_C3HHeJ_G0005149.1 mouse_genomes_project 11 60362870 60371084 + Gm26534 lincRNA lincRNA MGP_C3HHeJ_T0031836.1 MGP_C3HHeJ_G0018807.1 mouse_genomes_project 11 99664974 99715284 + MGP_C3HHeJ_P0031836 Cdk12 protein_coding protein_coding MGP_C3HHeJ_T0031837.1 MGP_C3HHeJ_G0018807.1 mouse_genomes_project 11 99665229 99710437 + MGP_C3HHeJ_P0031837 Cdk12 protein_coding protein_coding MGP_C3HHeJ_T0031838.1 MGP_C3HHeJ_G0018807.1 mouse_genomes_project 11 99665250 99714767 + MGP_C3HHeJ_P0031838 Cdk12 protein_coding protein_coding MGP_C3HHeJ_T0031839.1 MGP_C3HHeJ_G0018807.1 mouse_genomes_project 11 99683478 99688828 + Cdk12 protein_coding processed_transcript MGP_C3HHeJ_T0031840.1 MGP_C3HHeJ_G0018807.1 mouse_genomes_project 11 99705466 99743129 + Cdk12 protein_coding processed_transcript MGP_C3HHeJ_T0031841.1 MGP_C3HHeJ_G0018807.1 mouse_genomes_project 11 99727251 99732695 + Cdk12 protein_coding processed_transcript MGP_C3HHeJ_T0032635.1 MGP_C3HHeJ_G0019017.1 mouse_genomes_project 11 105582068 105583078 + MGP_C3HHeJ_P0032635 Rprml protein_coding protein_coding MGP_C3HHeJ_T0032656.1 MGP_C3HHeJ_G0019024.1 mouse_genomes_project 11 106138138 106140363 + MGP_C3HHeJ_P0032656 Sppl2c protein_coding protein_coding MGP_C3HHeJ_T0032657.1 MGP_C3HHeJ_G0019024.1 mouse_genomes_project 11 106138138 106143741 + MGP_C3HHeJ_P0032657 Sppl2c protein_coding protein_coding MGP_C3HHeJ_T0100014.1 MGP_C3HHeJ_G0038208.1 mouse_genomes_project 11 55671270 55671366 + Gm22603 snoRNA snoRNA MGP_C3HHeJ_T0031516.1 MGP_C3HHeJ_G0018726.1 mouse_genomes_project 11 96233063 96246985 - MGP_C3HHeJ_P0031516 Sgca protein_coding protein_coding MGP_C3HHeJ_T0031517.1 MGP_C3HHeJ_G0018726.1 mouse_genomes_project 11 96233069 96241337 - MGP_C3HHeJ_P0031517 Sgca protein_coding protein_coding MGP_C3HHeJ_T0031518.1 MGP_C3HHeJ_G0018726.1 mouse_genomes_project 11 96233094 96244121 - MGP_C3HHeJ_P0031518 Sgca protein_coding protein_coding MGP_C3HHeJ_T0031519.1 MGP_C3HHeJ_G0018726.1 mouse_genomes_project 11 96233480 96246985 - MGP_C3HHeJ_P0031519 Sgca protein_coding protein_coding MGP_C3HHeJ_T0031521.1 MGP_C3HHeJ_G0018726.1 mouse_genomes_project 11 96242884 96244147 - MGP_C3HHeJ_P0031521 Sgca protein_coding protein_coding MGP_C3HHeJ_T0009567.1 MGP_C3HHeJ_G0007700.1 mouse_genomes_project 11 3482329 3482382 - Gm22123 miRNA miRNA MGP_C3HHeJ_T0032968.1 MGP_C3HHeJ_G0019090.1 mouse_genomes_project 11 112016880 112059468 - MGP_C3HHeJ_P0032968 1700012B07Rik protein_coding protein_coding MGP_C3HHeJ_T0032969.1 MGP_C3HHeJ_G0019090.1 mouse_genomes_project 11 112020773 112059444 - MGP_C3HHeJ_P0032969 1700012B07Rik protein_coding protein_coding MGP_C3HHeJ_T0032970.1 MGP_C3HHeJ_G0019090.1 mouse_genomes_project 11 112020814 112043279 - MGP_C3HHeJ_P0032970 1700012B07Rik protein_coding protein_coding MGP_C3HHeJ_T0031477.1 MGP_C3HHeJ_G0018714.1 mouse_genomes_project 11 95702993 95723503 - Mycbpap protein_coding retained_intron MGP_C3HHeJ_T0031478.1 MGP_C3HHeJ_G0018714.1 mouse_genomes_project 11 95702993 95705196 - Mycbpap protein_coding processed_transcript MGP_C3HHeJ_T0031479.1 MGP_C3HHeJ_G0018714.1 mouse_genomes_project 11 95702993 95708976 - MGP_C3HHeJ_P0031479 Mycbpap protein_coding protein_coding MGP_C3HHeJ_T0031480.1 MGP_C3HHeJ_G0018714.1 mouse_genomes_project 11 95702993 95723503 - MGP_C3HHeJ_P0031480 Mycbpap protein_coding protein_coding MGP_C3HHeJ_T0031481.1 MGP_C3HHeJ_G0018714.1 mouse_genomes_project 11 95704628 95705183 - Mycbpap protein_coding retained_intron MGP_C3HHeJ_T0031482.1 MGP_C3HHeJ_G0018714.1 mouse_genomes_project 11 95709316 95711790 - Mycbpap protein_coding retained_intron MGP_C3HHeJ_T0012487.1 MGP_C3HHeJ_G0010591.1 mouse_genomes_project 11 52980661 52981060 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097993.1 MGP_C3HHeJ_G0036205.1 mouse_genomes_project 11 59177966 59178103 + Gm24939 rRNA rRNA MGP_C3HHeJ_T0003162.1 MGP_C3HHeJ_G0002931.1 mouse_genomes_project 11 78326128 78328782 - Dhrs13os antisense antisense MGP_C3HHeJ_T0033551.1 MGP_C3HHeJ_G0019207.1 mouse_genomes_project 11 120583909 120589439 - Tha1 protein_coding processed_transcript MGP_C3HHeJ_T0033552.1 MGP_C3HHeJ_G0019207.1 mouse_genomes_project 11 120583909 120589417 - MGP_C3HHeJ_P0033552 Tha1 protein_coding protein_coding MGP_C3HHeJ_T0033553.1 MGP_C3HHeJ_G0019207.1 mouse_genomes_project 11 120585682 120587871 - Tha1 protein_coding processed_transcript MGP_C3HHeJ_T0031941.1 MGP_C3HHeJ_G0018832.1 mouse_genomes_project 11 100425991 100442902 + MGP_C3HHeJ_P0031941 Cdc6 protein_coding protein_coding MGP_C3HHeJ_T0031942.1 MGP_C3HHeJ_G0018832.1 mouse_genomes_project 11 100426039 100442906 + MGP_C3HHeJ_P0031942 Cdc6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031943.1 MGP_C3HHeJ_G0018832.1 mouse_genomes_project 11 100426341 100440091 + MGP_C3HHeJ_P0031943 Cdc6 protein_coding protein_coding MGP_C3HHeJ_T0031944.1 MGP_C3HHeJ_G0018832.1 mouse_genomes_project 11 100438664 100439659 + Cdc6 protein_coding retained_intron MGP_C3HHeJ_T0027741.1 MGP_C3HHeJ_G0017778.1 mouse_genomes_project 11 3477704 3485951 - MGP_C3HHeJ_P0027741 Purb protein_coding protein_coding MGP_C3HHeJ_T0017030.1 MGP_C3HHeJ_G0014966.1 mouse_genomes_project 11 99824665 99832239 - 1700003D09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0032003.1 MGP_C3HHeJ_G0018859.1 mouse_genomes_project 11 101161900 101162668 - MGP_C3HHeJ_P0032003 Krtap9-3 protein_coding protein_coding MGP_C3HHeJ_T0009670.1 MGP_C3HHeJ_G0007803.1 mouse_genomes_project 11 106389275 106389420 - miRNA miRNA MGP_C3HHeJ_T0011702.1 MGP_C3HHeJ_G0009832.1 mouse_genomes_project 11 73815080 73816143 - MGP_C3HHeJ_P0011702 Olfr388-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0028697.1 MGP_C3HHeJ_G0018021.1 mouse_genomes_project 11 50521035 50526063 + MGP_C3HHeJ_P0028697 Nhp2 protein_coding protein_coding MGP_C3HHeJ_T0028698.1 MGP_C3HHeJ_G0018021.1 mouse_genomes_project 11 50521071 50525778 + Nhp2 protein_coding retained_intron MGP_C3HHeJ_T0031992.1 MGP_C3HHeJ_G0018850.1 mouse_genomes_project 11 101068791 101076007 - MGP_C3HHeJ_P0031992 Krt39 protein_coding protein_coding MGP_C3HHeJ_T0031993.1 MGP_C3HHeJ_G0018850.1 mouse_genomes_project 11 101069301 101075927 - MGP_C3HHeJ_P0031993 Krt39 protein_coding protein_coding MGP_C3HHeJ_T0101663.1 MGP_C3HHeJ_G0039629.1 mouse_genomes_project 11 101602279 101602519 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0032019.1 MGP_C3HHeJ_G0018875.1 mouse_genomes_project 11 101468959 101469799 - MGP_C3HHeJ_P0032019 Krtap4-16 protein_coding protein_coding MGP_C3HHeJ_T0030848.1 MGP_C3HHeJ_G0018556.1 mouse_genomes_project 11 80339194 80370635 - MGP_C3HHeJ_P0030848 Utp6 protein_coding protein_coding MGP_C3HHeJ_T0030849.1 MGP_C3HHeJ_G0018556.1 mouse_genomes_project 11 80342206 80370646 - MGP_C3HHeJ_P0030849 Utp6 protein_coding protein_coding MGP_C3HHeJ_T0030850.1 MGP_C3HHeJ_G0018556.1 mouse_genomes_project 11 80344103 80350509 - Utp6 protein_coding retained_intron MGP_C3HHeJ_T0030851.1 MGP_C3HHeJ_G0018556.1 mouse_genomes_project 11 80366852 80370623 - Utp6 protein_coding retained_intron MGP_C3HHeJ_T0101348.1 MGP_C3HHeJ_G0039420.1 mouse_genomes_project 11 48218767 48220305 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0012642.1 MGP_C3HHeJ_G0010746.1 mouse_genomes_project 11 113926772 113927262 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006216.1 MGP_C3HHeJ_G0005182.1 mouse_genomes_project 11 83131252 83134209 + Gm11426 lincRNA lincRNA MGP_C3HHeJ_T0029656.1 MGP_C3HHeJ_G0018270.1 mouse_genomes_project 11 68900115 68904010 + MGP_C3HHeJ_P0029656 Vamp2 protein_coding protein_coding MGP_C3HHeJ_T0029657.1 MGP_C3HHeJ_G0018270.1 mouse_genomes_project 11 68900135 68902316 + MGP_C3HHeJ_P0029657 Vamp2 protein_coding protein_coding MGP_C3HHeJ_T0029658.1 MGP_C3HHeJ_G0018270.1 mouse_genomes_project 11 68900147 68901301 + Vamp2 protein_coding retained_intron MGP_C3HHeJ_T0029659.1 MGP_C3HHeJ_G0018270.1 mouse_genomes_project 11 68900168 68901676 + Vamp2 protein_coding processed_transcript MGP_C3HHeJ_T0029660.1 MGP_C3HHeJ_G0018270.1 mouse_genomes_project 11 68901231 68901802 + Vamp2 protein_coding retained_intron MGP_C3HHeJ_T0031487.1 MGP_C3HHeJ_G0018716.1 mouse_genomes_project 11 95759144 95808946 - MGP_C3HHeJ_P0031487 Acsf2 protein_coding protein_coding MGP_C3HHeJ_T0031488.1 MGP_C3HHeJ_G0018716.1 mouse_genomes_project 11 95760629 95765416 - Acsf2 protein_coding processed_transcript MGP_C3HHeJ_T0031490.1 MGP_C3HHeJ_G0018716.1 mouse_genomes_project 11 95770829 95772303 - Acsf2 protein_coding processed_transcript MGP_C3HHeJ_T0031491.1 MGP_C3HHeJ_G0018716.1 mouse_genomes_project 11 95771815 95808844 - Acsf2 protein_coding processed_transcript MGP_C3HHeJ_T0031693.1 MGP_C3HHeJ_G0018774.1 mouse_genomes_project 11 98389137 98400237 + MGP_C3HHeJ_P0031693 Sp6 protein_coding protein_coding MGP_C3HHeJ_T0031694.1 MGP_C3HHeJ_G0018774.1 mouse_genomes_project 11 98394399 98400234 + MGP_C3HHeJ_P0031694 Sp6 protein_coding protein_coding MGP_C3HHeJ_T0098791.1 MGP_C3HHeJ_G0036985.1 mouse_genomes_project 11 77203182 77203332 + Gm22611 snRNA snRNA MGP_C3HHeJ_T0033766.1 MGP_C3HHeJ_G0019250.1 mouse_genomes_project 11 123290882 123292345 - MGP_C3HHeJ_P0033766 Oxld1 protein_coding protein_coding MGP_C3HHeJ_T0033767.1 MGP_C3HHeJ_G0019250.1 mouse_genomes_project 11 123291161 123292213 - MGP_C3HHeJ_P0033767 Oxld1 protein_coding protein_coding MGP_C3HHeJ_T0032574.1 MGP_C3HHeJ_G0019005.1 mouse_genomes_project 11 104980909 105004279 - MGP_C3HHeJ_P0032574 Plcd3 protein_coding protein_coding MGP_C3HHeJ_T0032575.1 MGP_C3HHeJ_G0019005.1 mouse_genomes_project 11 104980909 104988900 - MGP_C3HHeJ_P0032575 Plcd3 protein_coding protein_coding MGP_C3HHeJ_T0032576.1 MGP_C3HHeJ_G0019005.1 mouse_genomes_project 11 104981190 104982356 - Plcd3 protein_coding processed_transcript MGP_C3HHeJ_T0032577.1 MGP_C3HHeJ_G0019005.1 mouse_genomes_project 11 104992228 105004239 - Plcd3 protein_coding processed_transcript MGP_C3HHeJ_T0032578.1 MGP_C3HHeJ_G0019005.1 mouse_genomes_project 11 104993403 105004212 - Plcd3 protein_coding processed_transcript MGP_C3HHeJ_T0032523.1 MGP_C3HHeJ_G0018993.1 mouse_genomes_project 11 104557733 104570796 - MGP_C3HHeJ_P0032523 Ccdc43 protein_coding protein_coding MGP_C3HHeJ_T0032524.1 MGP_C3HHeJ_G0018993.1 mouse_genomes_project 11 104557735 104570748 - MGP_C3HHeJ_P0032524 Ccdc43 protein_coding protein_coding MGP_C3HHeJ_T0032525.1 MGP_C3HHeJ_G0018993.1 mouse_genomes_project 11 104559387 104570550 - Ccdc43 protein_coding processed_transcript MGP_C3HHeJ_T0032526.1 MGP_C3HHeJ_G0018993.1 mouse_genomes_project 11 104561366 104570748 - Ccdc43 protein_coding processed_transcript MGP_C3HHeJ_T0032527.1 MGP_C3HHeJ_G0018993.1 mouse_genomes_project 11 104562757 104570684 - Ccdc43 protein_coding processed_transcript MGP_C3HHeJ_T0032769.1 MGP_C3HHeJ_G0019050.1 mouse_genomes_project 11 108292865 108299803 - MGP_C3HHeJ_P0032769 Ftsj3 protein_coding protein_coding MGP_C3HHeJ_T0032770.1 MGP_C3HHeJ_G0019050.1 mouse_genomes_project 11 108293622 108294422 - Ftsj3 protein_coding retained_intron MGP_C3HHeJ_T0032771.1 MGP_C3HHeJ_G0019050.1 mouse_genomes_project 11 108294732 108296278 - Ftsj3 protein_coding retained_intron MGP_C3HHeJ_T0032772.1 MGP_C3HHeJ_G0019050.1 mouse_genomes_project 11 108297099 108297719 - Ftsj3 protein_coding retained_intron MGP_C3HHeJ_T0032773.1 MGP_C3HHeJ_G0019050.1 mouse_genomes_project 11 108298015 108299520 - Ftsj3 protein_coding retained_intron MGP_C3HHeJ_T0032774.1 MGP_C3HHeJ_G0019050.1 mouse_genomes_project 11 108298586 108299528 - Ftsj3 protein_coding retained_intron MGP_C3HHeJ_T0101656.1 MGP_C3HHeJ_G0039622.1 mouse_genomes_project 11 96038385 96039136 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0033724.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122908740 122956077 - MGP_C3HHeJ_P0033724 Slc38a10 protein_coding protein_coding MGP_C3HHeJ_T0033725.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122909221 122955809 - MGP_C3HHeJ_P0033725 Slc38a10 protein_coding protein_coding MGP_C3HHeJ_T0033726.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122910401 122911769 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033727.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122910458 122913369 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033728.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122910572 122915227 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033729.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122910585 122915239 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033730.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122910653 122915108 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033731.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122913317 122915119 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033732.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122915784 122956010 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033733.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122923652 122956077 - MGP_C3HHeJ_P0033733 Slc38a10 protein_coding protein_coding MGP_C3HHeJ_T0033734.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122928633 122956077 - MGP_C3HHeJ_P0033734 Slc38a10 protein_coding protein_coding MGP_C3HHeJ_T0033735.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122937610 122956051 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033736.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122939557 122956018 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033737.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122942727 122956053 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0033738.1 MGP_C3HHeJ_G0019241.1 mouse_genomes_project 11 122943866 122947537 - Slc38a10 protein_coding processed_transcript MGP_C3HHeJ_T0030873.1 MGP_C3HHeJ_G0018562.1 mouse_genomes_project 11 80602501 80618172 + MGP_C3HHeJ_P0030873 Rnf135 protein_coding protein_coding MGP_C3HHeJ_T0030874.1 MGP_C3HHeJ_G0018562.1 mouse_genomes_project 11 80602873 80608516 + Rnf135 protein_coding processed_transcript MGP_C3HHeJ_T0030785.1 MGP_C3HHeJ_G0018538.1 mouse_genomes_project 11 78834614 78846273 + MGP_C3HHeJ_P0030785 Poldip2 protein_coding protein_coding MGP_C3HHeJ_T0030786.1 MGP_C3HHeJ_G0018538.1 mouse_genomes_project 11 78834809 78836402 + Poldip2 protein_coding processed_transcript MGP_C3HHeJ_T0030787.1 MGP_C3HHeJ_G0018538.1 mouse_genomes_project 11 78834837 78845708 + MGP_C3HHeJ_P0030787 Poldip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030788.1 MGP_C3HHeJ_G0018538.1 mouse_genomes_project 11 78838650 78841469 + Poldip2 protein_coding retained_intron MGP_C3HHeJ_T0030789.1 MGP_C3HHeJ_G0018538.1 mouse_genomes_project 11 78839240 78842122 + Poldip2 protein_coding retained_intron MGP_C3HHeJ_T0030790.1 MGP_C3HHeJ_G0018538.1 mouse_genomes_project 11 78841867 78842798 + Poldip2 protein_coding retained_intron MGP_C3HHeJ_T0030416.1 MGP_C3HHeJ_G0018461.1 mouse_genomes_project 11 75442913 75492919 - MGP_C3HHeJ_P0030416 Rpa1 protein_coding protein_coding MGP_C3HHeJ_T0030417.1 MGP_C3HHeJ_G0018461.1 mouse_genomes_project 11 75445097 75492905 - MGP_C3HHeJ_P0030417 Rpa1 protein_coding protein_coding MGP_C3HHeJ_T0030418.1 MGP_C3HHeJ_G0018461.1 mouse_genomes_project 11 75446054 75486784 - Rpa1 protein_coding processed_transcript MGP_C3HHeJ_T0030419.1 MGP_C3HHeJ_G0018461.1 mouse_genomes_project 11 75460721 75492890 - Rpa1 protein_coding retained_intron MGP_C3HHeJ_T0030420.1 MGP_C3HHeJ_G0018461.1 mouse_genomes_project 11 75486573 75492888 - Rpa1 protein_coding processed_transcript MGP_C3HHeJ_T0003100.1 MGP_C3HHeJ_G0002880.1 mouse_genomes_project 11 53831405 53837439 + Gm12227 antisense antisense MGP_C3HHeJ_T0027517.1 MGP_C3HHeJ_G0017727.1 mouse_genomes_project 11 982131 986109 - MGP_C3HHeJ_P0027517 Mtfp1 protein_coding protein_coding MGP_C3HHeJ_T0027518.1 MGP_C3HHeJ_G0017727.1 mouse_genomes_project 11 985085 985792 - Mtfp1 protein_coding processed_transcript MGP_C3HHeJ_T0098772.1 MGP_C3HHeJ_G0036966.1 mouse_genomes_project 11 50893936 50894044 + Gm26061 snRNA snRNA MGP_C3HHeJ_T0029833.1 MGP_C3HHeJ_G0018318.1 mouse_genomes_project 11 69758263 69767006 - MGP_C3HHeJ_P0029833 Acap1 protein_coding protein_coding MGP_C3HHeJ_T0029834.1 MGP_C3HHeJ_G0018318.1 mouse_genomes_project 11 69758263 69775490 - MGP_C3HHeJ_P0029834 Acap1 protein_coding protein_coding MGP_C3HHeJ_T0029835.1 MGP_C3HHeJ_G0018318.1 mouse_genomes_project 11 69758321 69781340 - MGP_C3HHeJ_P0029835 Acap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0029836.1 MGP_C3HHeJ_G0018318.1 mouse_genomes_project 11 69760179 69765114 - Acap1 protein_coding processed_transcript MGP_C3HHeJ_T0029837.1 MGP_C3HHeJ_G0018318.1 mouse_genomes_project 11 69766048 69767166 - Acap1 protein_coding processed_transcript MGP_C3HHeJ_T0027883.1 MGP_C3HHeJ_G0017810.1 mouse_genomes_project 11 14396600 14397551 + MGP_C3HHeJ_P0027883 Vmn1r89 protein_coding protein_coding MGP_C3HHeJ_T0030019.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70463937 70465058 + MGP_C3HHeJ_P0030019 Pld2 protein_coding protein_coding MGP_C3HHeJ_T0030020.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70464179 70482358 + MGP_C3HHeJ_P0030020 Pld2 protein_coding protein_coding MGP_C3HHeJ_T0030021.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70464216 70482358 + MGP_C3HHeJ_P0030021 Pld2 protein_coding protein_coding MGP_C3HHeJ_T0030022.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70464229 70470267 + MGP_C3HHeJ_P0030022 Pld2 protein_coding protein_coding MGP_C3HHeJ_T0030023.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70478183 70481351 + Pld2 protein_coding retained_intron MGP_C3HHeJ_T0030024.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70479889 70481475 + MGP_C3HHeJ_P0030024 Pld2 protein_coding protein_coding MGP_C3HHeJ_T0030025.1 MGP_C3HHeJ_G0018355.1 mouse_genomes_project 11 70480054 70481725 + Pld2 protein_coding retained_intron MGP_C3HHeJ_T0098803.1 MGP_C3HHeJ_G0036997.1 mouse_genomes_project 11 88180277 88180441 + Rnu1a1 snRNA snRNA MGP_C3HHeJ_T0016988.1 MGP_C3HHeJ_G0014943.1 mouse_genomes_project 11 72255230 72257385 + 1700051A21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016989.1 MGP_C3HHeJ_G0014943.1 mouse_genomes_project 11 72255653 72257367 + 1700051A21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0006245.1 MGP_C3HHeJ_G0005201.1 mouse_genomes_project 11 96917500 96924689 + Gm11528 lincRNA lincRNA MGP_C3HHeJ_T0033649.1 MGP_C3HHeJ_G0019228.1 mouse_genomes_project 11 122084074 122119163 + MGP_C3HHeJ_P0033649 Card14 protein_coding protein_coding MGP_C3HHeJ_T0033650.1 MGP_C3HHeJ_G0019228.1 mouse_genomes_project 11 122089041 122119163 + MGP_C3HHeJ_P0033650 Card14 protein_coding protein_coding MGP_C3HHeJ_T0033651.1 MGP_C3HHeJ_G0019228.1 mouse_genomes_project 11 122094532 122118975 + Card14 protein_coding processed_transcript MGP_C3HHeJ_T0033652.1 MGP_C3HHeJ_G0019228.1 mouse_genomes_project 11 122096826 122119162 + Card14 protein_coding processed_transcript MGP_C3HHeJ_T0031624.1 MGP_C3HHeJ_G0018758.1 mouse_genomes_project 11 97629047 97632567 + MGP_C3HHeJ_P0031624 Hoxb7 protein_coding protein_coding MGP_C3HHeJ_T0031625.1 MGP_C3HHeJ_G0018758.1 mouse_genomes_project 11 97631137 97631898 + Hoxb7 protein_coding processed_transcript MGP_C3HHeJ_T0009643.1 MGP_C3HHeJ_G0007776.1 mouse_genomes_project 11 88555670 88555785 - Mir142b miRNA miRNA MGP_C3HHeJ_T0032689.1 MGP_C3HHeJ_G0019029.1 mouse_genomes_project 11 106582048 106639495 + MGP_C3HHeJ_P0032689 Itgb3 protein_coding protein_coding MGP_C3HHeJ_T0032690.1 MGP_C3HHeJ_G0019029.1 mouse_genomes_project 11 106611397 106638830 + Itgb3 protein_coding processed_transcript MGP_C3HHeJ_T0029182.1 MGP_C3HHeJ_G0018168.1 mouse_genomes_project 11 59752703 59772641 + MGP_C3HHeJ_P0029182 Lrrc48 protein_coding protein_coding MGP_C3HHeJ_T0029183.1 MGP_C3HHeJ_G0018168.1 mouse_genomes_project 11 59752703 59796336 + MGP_C3HHeJ_P0029183 Lrrc48 protein_coding protein_coding MGP_C3HHeJ_T0029184.1 MGP_C3HHeJ_G0018168.1 mouse_genomes_project 11 59752703 59777762 + MGP_C3HHeJ_P0029184 Lrrc48 protein_coding protein_coding MGP_C3HHeJ_T0029185.1 MGP_C3HHeJ_G0018168.1 mouse_genomes_project 11 59752731 59775557 + Lrrc48 protein_coding processed_transcript MGP_C3HHeJ_T0029186.1 MGP_C3HHeJ_G0018168.1 mouse_genomes_project 11 59752757 59796328 + MGP_C3HHeJ_P0029186 Lrrc48 protein_coding protein_coding MGP_C3HHeJ_T0012657.1 MGP_C3HHeJ_G0010761.1 mouse_genomes_project 11 119792856 119793304 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009673.1 MGP_C3HHeJ_G0007806.1 mouse_genomes_project 11 108853617 108853718 - Gm25994 miRNA miRNA MGP_C3HHeJ_T0012438.1 MGP_C3HHeJ_G0010542.1 mouse_genomes_project 11 28664434 28664796 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030194.1 MGP_C3HHeJ_G0018386.1 mouse_genomes_project 11 72198506 72202725 - MGP_C3HHeJ_P0030194 Med31 protein_coding protein_coding MGP_C3HHeJ_T0030195.1 MGP_C3HHeJ_G0018386.1 mouse_genomes_project 11 72199990 72202186 - Med31 protein_coding retained_intron MGP_C3HHeJ_T0033305.1 MGP_C3HHeJ_G0019159.1 mouse_genomes_project 11 118632160 118638078 - MGP_C3HHeJ_P0033305 H3f3b protein_coding protein_coding MGP_C3HHeJ_T0003077.1 MGP_C3HHeJ_G0002859.1 mouse_genomes_project 11 41599950 41602653 - Gm12144 antisense antisense MGP_C3HHeJ_T0028031.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21215214 21283117 + MGP_C3HHeJ_P0028031 Pus10 protein_coding protein_coding MGP_C3HHeJ_T0028032.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21215237 21281766 + MGP_C3HHeJ_P0028032 Pus10 protein_coding protein_coding MGP_C3HHeJ_T0028033.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21215547 21283117 + MGP_C3HHeJ_P0028033 Pus10 protein_coding protein_coding MGP_C3HHeJ_T0028034.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21215728 21222835 + Pus10 protein_coding retained_intron MGP_C3HHeJ_T0028035.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21216051 21222721 + MGP_C3HHeJ_P0028035 Pus10 protein_coding protein_coding MGP_C3HHeJ_T0028036.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21267085 21279312 + Pus10 protein_coding retained_intron MGP_C3HHeJ_T0028037.1 MGP_C3HHeJ_G0017846.1 mouse_genomes_project 11 21268147 21281639 + Pus10 protein_coding retained_intron MGP_C3HHeJ_T0003141.1 MGP_C3HHeJ_G0002914.1 mouse_genomes_project 11 66602501 66651673 - Gm12298 antisense antisense MGP_C3HHeJ_T0030596.1 MGP_C3HHeJ_G0018499.1 mouse_genomes_project 11 77721709 77729756 + MGP_C3HHeJ_P0030596 Coro6 protein_coding protein_coding MGP_C3HHeJ_T0030597.1 MGP_C3HHeJ_G0018499.1 mouse_genomes_project 11 77721943 77723248 + MGP_C3HHeJ_P0030597 Coro6 protein_coding protein_coding MGP_C3HHeJ_T0030598.1 MGP_C3HHeJ_G0018499.1 mouse_genomes_project 11 77723129 77728873 + MGP_C3HHeJ_P0030598 Coro6 protein_coding protein_coding MGP_C3HHeJ_T0030599.1 MGP_C3HHeJ_G0018499.1 mouse_genomes_project 11 77723129 77728873 + MGP_C3HHeJ_P0030599 Coro6 protein_coding protein_coding MGP_C3HHeJ_T0030600.1 MGP_C3HHeJ_G0018499.1 mouse_genomes_project 11 77723204 77728773 + MGP_C3HHeJ_P0030600 Coro6 protein_coding protein_coding MGP_C3HHeJ_T0030601.1 MGP_C3HHeJ_G0018499.1 mouse_genomes_project 11 77723204 77728773 + MGP_C3HHeJ_P0030601 Coro6 protein_coding protein_coding MGP_C3HHeJ_T0016997.1 MGP_C3HHeJ_G0014949.1 mouse_genomes_project 11 83435959 83445209 - Unc45bos processed_transcript processed_transcript MGP_C3HHeJ_T0012580.1 MGP_C3HHeJ_G0010684.1 mouse_genomes_project 11 86665386 86665865 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012362.1 MGP_C3HHeJ_G0010466.1 mouse_genomes_project 11 3770531 3771109 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030714.1 MGP_C3HHeJ_G0018521.1 mouse_genomes_project 11 78493412 78496851 + MGP_C3HHeJ_P0030714 Rab34 protein_coding protein_coding MGP_C3HHeJ_T0030715.1 MGP_C3HHeJ_G0018521.1 mouse_genomes_project 11 78493851 78497198 + MGP_C3HHeJ_P0030715 Rab34 protein_coding protein_coding MGP_C3HHeJ_T0030716.1 MGP_C3HHeJ_G0018521.1 mouse_genomes_project 11 78494212 78495279 + Rab34 protein_coding retained_intron MGP_C3HHeJ_T0030717.1 MGP_C3HHeJ_G0018521.1 mouse_genomes_project 11 78494309 78497165 + MGP_C3HHeJ_P0030717 Rab34 protein_coding protein_coding MGP_C3HHeJ_T0030718.1 MGP_C3HHeJ_G0018521.1 mouse_genomes_project 11 78494560 78496127 + Rab34 protein_coding retained_intron MGP_C3HHeJ_T0030719.1 MGP_C3HHeJ_G0018521.1 mouse_genomes_project 11 78495325 78495906 + Rab34 protein_coding retained_intron MGP_C3HHeJ_T0028651.1 MGP_C3HHeJ_G0018008.1 mouse_genomes_project 11 49723150 49733473 - MGP_C3HHeJ_P0028651 Zfp354b protein_coding protein_coding MGP_C3HHeJ_T0028652.1 MGP_C3HHeJ_G0018008.1 mouse_genomes_project 11 49730405 49732489 - Zfp354b protein_coding processed_transcript MGP_C3HHeJ_T0101640.1 MGP_C3HHeJ_G0039606.1 mouse_genomes_project 11 73594281 73595216 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0030602.1 MGP_C3HHeJ_G0018500.1 mouse_genomes_project 11 77729756 77735457 - MGP_C3HHeJ_P0030602 Ankrd13b protein_coding protein_coding MGP_C3HHeJ_T0030603.1 MGP_C3HHeJ_G0018500.1 mouse_genomes_project 11 77729756 77748687 - MGP_C3HHeJ_P0030603 Ankrd13b protein_coding protein_coding MGP_C3HHeJ_T0030604.1 MGP_C3HHeJ_G0018500.1 mouse_genomes_project 11 77729758 77732897 - Ankrd13b protein_coding retained_intron MGP_C3HHeJ_T0030605.1 MGP_C3HHeJ_G0018500.1 mouse_genomes_project 11 77729758 77748699 - MGP_C3HHeJ_P0030605 Ankrd13b protein_coding protein_coding MGP_C3HHeJ_T0030606.1 MGP_C3HHeJ_G0018500.1 mouse_genomes_project 11 77731386 77735786 - Ankrd13b protein_coding retained_intron MGP_C3HHeJ_T0030607.1 MGP_C3HHeJ_G0018500.1 mouse_genomes_project 11 77732043 77735268 - MGP_C3HHeJ_P0030607 Ankrd13b protein_coding protein_coding MGP_C3HHeJ_T0028746.1 MGP_C3HHeJ_G0018033.1 mouse_genomes_project 11 51189589 51202752 + MGP_C3HHeJ_P0028746 Skp1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028747.1 MGP_C3HHeJ_G0018033.1 mouse_genomes_project 11 51189603 51204516 + MGP_C3HHeJ_P0028747 Skp1a protein_coding protein_coding MGP_C3HHeJ_T0028748.1 MGP_C3HHeJ_G0018033.1 mouse_genomes_project 11 51189631 51196013 + Skp1a protein_coding retained_intron MGP_C3HHeJ_T0028749.1 MGP_C3HHeJ_G0018033.1 mouse_genomes_project 11 51189631 51202755 + MGP_C3HHeJ_P0028749 Skp1a protein_coding protein_coding MGP_C3HHeJ_T0028750.1 MGP_C3HHeJ_G0018033.1 mouse_genomes_project 11 51189783 51204516 + MGP_C3HHeJ_P0028750 Skp1a protein_coding protein_coding MGP_C3HHeJ_T0028751.1 MGP_C3HHeJ_G0018033.1 mouse_genomes_project 11 51194452 51203710 + MGP_C3HHeJ_P0028751 Skp1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012514.1 MGP_C3HHeJ_G0010618.1 mouse_genomes_project 11 60636276 60636993 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030015.1 MGP_C3HHeJ_G0018354.1 mouse_genomes_project 11 70449255 70450312 + Psmb6 protein_coding retained_intron MGP_C3HHeJ_T0030016.1 MGP_C3HHeJ_G0018354.1 mouse_genomes_project 11 70449274 70451537 + MGP_C3HHeJ_P0030016 Psmb6 protein_coding protein_coding MGP_C3HHeJ_T0030017.1 MGP_C3HHeJ_G0018354.1 mouse_genomes_project 11 70449997 70451081 + Psmb6 protein_coding retained_intron MGP_C3HHeJ_T0030018.1 MGP_C3HHeJ_G0018354.1 mouse_genomes_project 11 70450959 70451746 + Psmb6 protein_coding retained_intron MGP_C3HHeJ_T0016970.1 MGP_C3HHeJ_G0014934.1 mouse_genomes_project 11 58542088 58544429 - 2610507I01Rik processed_transcript processed_transcript MGP_C3HHeJ_T0027918.1 MGP_C3HHeJ_G0017822.1 mouse_genomes_project 11 17978628 18095132 + MGP_C3HHeJ_P0027918 Sertad2 protein_coding protein_coding MGP_C3HHeJ_T0027919.1 MGP_C3HHeJ_G0017822.1 mouse_genomes_project 11 18074064 18095132 + MGP_C3HHeJ_P0027919 Sertad2 protein_coding protein_coding MGP_C3HHeJ_T0027920.1 MGP_C3HHeJ_G0017822.1 mouse_genomes_project 11 18089265 18091176 + MGP_C3HHeJ_P0027920 Sertad2 protein_coding protein_coding MGP_C3HHeJ_T0032516.1 MGP_C3HHeJ_G0018990.1 mouse_genomes_project 11 104444786 104447836 - MGP_C3HHeJ_P0032516 Gm11627 protein_coding protein_coding MGP_C3HHeJ_T0032517.1 MGP_C3HHeJ_G0018990.1 mouse_genomes_project 11 104444832 104447650 - Gm11627 protein_coding processed_transcript MGP_C3HHeJ_T0032518.1 MGP_C3HHeJ_G0018990.1 mouse_genomes_project 11 104444879 104447493 - MGP_C3HHeJ_P0032518 Gm11627 protein_coding protein_coding MGP_C3HHeJ_T0028116.1 MGP_C3HHeJ_G0017863.1 mouse_genomes_project 11 27318813 27319639 - Rps27a protein_coding processed_transcript MGP_C3HHeJ_T0028117.1 MGP_C3HHeJ_G0017863.1 mouse_genomes_project 11 27318813 27320828 - MGP_C3HHeJ_P0028117 Rps27a protein_coding protein_coding MGP_C3HHeJ_T0028118.1 MGP_C3HHeJ_G0017863.1 mouse_genomes_project 11 27318813 27321077 - MGP_C3HHeJ_P0028118 Rps27a protein_coding protein_coding MGP_C3HHeJ_T0028119.1 MGP_C3HHeJ_G0017863.1 mouse_genomes_project 11 27318866 27320850 - Rps27a protein_coding processed_transcript MGP_C3HHeJ_T0028120.1 MGP_C3HHeJ_G0017863.1 mouse_genomes_project 11 27320083 27320859 - Rps27a protein_coding processed_transcript MGP_C3HHeJ_T0097996.1 MGP_C3HHeJ_G0036208.1 mouse_genomes_project 11 74411660 74411779 + n-R5s71 rRNA rRNA MGP_C3HHeJ_T0012477.1 MGP_C3HHeJ_G0010581.1 mouse_genomes_project 11 48905959 48907999 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009674.1 MGP_C3HHeJ_G0007807.1 mouse_genomes_project 11 108993950 108994054 - Gm27322 miRNA miRNA MGP_C3HHeJ_T0012550.1 MGP_C3HHeJ_G0010654.1 mouse_genomes_project 11 74850667 74850835 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012538.1 MGP_C3HHeJ_G0010642.1 mouse_genomes_project 11 70701509 70701930 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028558.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48613877 48653543 + MGP_C3HHeJ_P0028558 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0028559.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48613877 48653543 + MGP_C3HHeJ_P0028559 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0028560.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48613877 48653543 + MGP_C3HHeJ_P0028560 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0028561.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48613879 48653543 + MGP_C3HHeJ_P0028561 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0028562.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48613897 48642753 + Mapk9 protein_coding processed_transcript MGP_C3HHeJ_T0028563.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48614019 48640524 + Mapk9 protein_coding processed_transcript MGP_C3HHeJ_T0028564.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48621340 48653533 + MGP_C3HHeJ_P0028564 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0028565.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48621357 48641452 + Mapk9 protein_coding processed_transcript MGP_C3HHeJ_T0028566.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48621384 48650432 + MGP_C3HHeJ_P0028566 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0028567.1 MGP_C3HHeJ_G0017989.1 mouse_genomes_project 11 48621384 48650432 + MGP_C3HHeJ_P0028567 Mapk9 protein_coding protein_coding MGP_C3HHeJ_T0033835.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459115 123465714 - Sirt7 protein_coding retained_intron MGP_C3HHeJ_T0033836.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459115 123465985 - Sirt7 protein_coding retained_intron MGP_C3HHeJ_T0033837.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459115 123465759 - MGP_C3HHeJ_P0033837 Sirt7 protein_coding protein_coding MGP_C3HHeJ_T0033838.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459117 123465744 - Sirt7 protein_coding retained_intron MGP_C3HHeJ_T0033839.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459131 123465765 - Sirt7 protein_coding retained_intron MGP_C3HHeJ_T0033840.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459163 123461722 - MGP_C3HHeJ_P0033840 Sirt7 protein_coding protein_coding MGP_C3HHeJ_T0033841.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123459512 123460113 - Sirt7 protein_coding processed_transcript MGP_C3HHeJ_T0033842.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123461743 123465735 - Sirt7 protein_coding processed_transcript MGP_C3HHeJ_T0033843.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123462734 123463547 - Sirt7 protein_coding retained_intron MGP_C3HHeJ_T0033844.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123464024 123465737 - Sirt7 protein_coding retained_intron MGP_C3HHeJ_T0033845.1 MGP_C3HHeJ_G0019265.1 mouse_genomes_project 11 123464734 123465729 - MGP_C3HHeJ_P0033845 Sirt7 protein_coding protein_coding MGP_C3HHeJ_T0030211.1 MGP_C3HHeJ_G0018392.1 mouse_genomes_project 11 72436984 72439542 + MGP_C3HHeJ_P0030211 Ggt6 protein_coding protein_coding MGP_C3HHeJ_T0030212.1 MGP_C3HHeJ_G0018392.1 mouse_genomes_project 11 72436989 72439540 + MGP_C3HHeJ_P0030212 Ggt6 protein_coding protein_coding MGP_C3HHeJ_T0030012.1 MGP_C3HHeJ_G0018352.1 mouse_genomes_project 11 70434952 70436053 - MGP_C3HHeJ_P0030012 Vmo1 protein_coding protein_coding MGP_C3HHeJ_T0032497.1 MGP_C3HHeJ_G0018987.1 mouse_genomes_project 11 104289960 104303717 - MGP_C3HHeJ_P0032497 Fam171a2 protein_coding protein_coding MGP_C3HHeJ_T0032498.1 MGP_C3HHeJ_G0018987.1 mouse_genomes_project 11 104291727 104292765 - Fam171a2 protein_coding processed_transcript MGP_C3HHeJ_T0032499.1 MGP_C3HHeJ_G0018987.1 mouse_genomes_project 11 104293220 104303629 - Fam171a2 protein_coding processed_transcript MGP_C3HHeJ_T0011207.1 MGP_C3HHeJ_G0009340.1 mouse_genomes_project 11 57199838 57200109 + Gm26025 misc_RNA misc_RNA MGP_C3HHeJ_T0029621.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68793039 68815784 - MGP_C3HHeJ_P0029621 Pfas protein_coding protein_coding MGP_C3HHeJ_T0029622.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68793042 68801598 - Pfas protein_coding retained_intron MGP_C3HHeJ_T0029623.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68793802 68797927 - Pfas protein_coding retained_intron MGP_C3HHeJ_T0029624.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68795283 68798671 - MGP_C3HHeJ_P0029624 Pfas protein_coding protein_coding MGP_C3HHeJ_T0029625.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68798041 68799147 - Pfas protein_coding retained_intron MGP_C3HHeJ_T0029626.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68800303 68804987 - MGP_C3HHeJ_P0029626 Pfas protein_coding protein_coding MGP_C3HHeJ_T0029627.1 MGP_C3HHeJ_G0018265.1 mouse_genomes_project 11 68804276 68815775 - Pfas protein_coding retained_intron MGP_C3HHeJ_T0032098.1 MGP_C3HHeJ_G0018910.1 mouse_genomes_project 11 102241466 102268374 + Ttc25 protein_coding retained_intron MGP_C3HHeJ_T0032099.1 MGP_C3HHeJ_G0018910.1 mouse_genomes_project 11 102241482 102245979 + Ttc25 protein_coding retained_intron MGP_C3HHeJ_T0032100.1 MGP_C3HHeJ_G0018910.1 mouse_genomes_project 11 102241573 102270359 + MGP_C3HHeJ_P0032100 Ttc25 protein_coding protein_coding MGP_C3HHeJ_T0032101.1 MGP_C3HHeJ_G0018910.1 mouse_genomes_project 11 102245315 102246097 + Ttc25 protein_coding retained_intron MGP_C3HHeJ_T0029113.1 MGP_C3HHeJ_G0018156.1 mouse_genomes_project 11 58950088 58951199 - MGP_C3HHeJ_P0029113 Olfr223 protein_coding protein_coding MGP_C3HHeJ_T0003151.1 MGP_C3HHeJ_G0002922.1 mouse_genomes_project 11 69152526 69154818 - Kcnab3os antisense antisense MGP_C3HHeJ_T0028680.1 MGP_C3HHeJ_G0018018.1 mouse_genomes_project 11 50185870 50479640 + MGP_C3HHeJ_P0028680 Col23a1 protein_coding protein_coding MGP_C3HHeJ_T0028681.1 MGP_C3HHeJ_G0018018.1 mouse_genomes_project 11 50186077 50473409 + MGP_C3HHeJ_P0028681 Col23a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028682.1 MGP_C3HHeJ_G0018018.1 mouse_genomes_project 11 50407898 50473409 + MGP_C3HHeJ_P0028682 Col23a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028683.1 MGP_C3HHeJ_G0018018.1 mouse_genomes_project 11 50444522 50473409 + MGP_C3HHeJ_P0028683 Col23a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028684.1 MGP_C3HHeJ_G0018018.1 mouse_genomes_project 11 50446301 50473409 + MGP_C3HHeJ_P0028684 Col23a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028685.1 MGP_C3HHeJ_G0018018.1 mouse_genomes_project 11 50469509 50476021 + MGP_C3HHeJ_P0028685 Col23a1 protein_coding protein_coding MGP_C3HHeJ_T0027949.1 MGP_C3HHeJ_G0017828.1 mouse_genomes_project 11 19015984 19031390 - MGP_C3HHeJ_P0027949 Mdh1 protein_coding protein_coding MGP_C3HHeJ_T0027950.1 MGP_C3HHeJ_G0017828.1 mouse_genomes_project 11 19017687 19018927 - Mdh1 protein_coding processed_transcript MGP_C3HHeJ_T0027951.1 MGP_C3HHeJ_G0017828.1 mouse_genomes_project 11 19018719 19023405 - Mdh1 protein_coding processed_transcript MGP_C3HHeJ_T0027952.1 MGP_C3HHeJ_G0017828.1 mouse_genomes_project 11 19022093 19031564 - MGP_C3HHeJ_P0027952 Mdh1 protein_coding protein_coding MGP_C3HHeJ_T0033313.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118674626 118690454 - MGP_C3HHeJ_P0033313 Unc13d protein_coding protein_coding MGP_C3HHeJ_T0033314.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118674627 118690665 - MGP_C3HHeJ_P0033314 Unc13d protein_coding protein_coding MGP_C3HHeJ_T0033315.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118674627 118690665 - MGP_C3HHeJ_P0033315 Unc13d protein_coding protein_coding MGP_C3HHeJ_T0033316.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118675107 118690328 - MGP_C3HHeJ_P0033316 Unc13d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033317.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118675191 118690294 - MGP_C3HHeJ_P0033317 Unc13d protein_coding protein_coding MGP_C3HHeJ_T0033318.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118681347 118682908 - Unc13d protein_coding retained_intron MGP_C3HHeJ_T0033319.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118688810 118689754 - MGP_C3HHeJ_P0033319 Unc13d protein_coding protein_coding MGP_C3HHeJ_T0033320.1 MGP_C3HHeJ_G0019161.1 mouse_genomes_project 11 118689173 118690645 - MGP_C3HHeJ_P0033320 Unc13d protein_coding protein_coding MGP_C3HHeJ_T0031543.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96551895 96589228 - MGP_C3HHeJ_P0031543 Kat7 protein_coding protein_coding MGP_C3HHeJ_T0031544.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96551895 96589273 - MGP_C3HHeJ_P0031544 Kat7 protein_coding protein_coding MGP_C3HHeJ_T0031545.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96551895 96588629 - MGP_C3HHeJ_P0031545 Kat7 protein_coding protein_coding MGP_C3HHeJ_T0031546.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96551895 96588629 - MGP_C3HHeJ_P0031546 Kat7 protein_coding protein_coding MGP_C3HHeJ_T0031547.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96551895 96589273 - MGP_C3HHeJ_P0031547 Kat7 protein_coding protein_coding MGP_C3HHeJ_T0031548.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96552960 96559543 - MGP_C3HHeJ_P0031548 Kat7 protein_coding protein_coding MGP_C3HHeJ_T0031549.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96559550 96589216 - Kat7 protein_coding processed_transcript MGP_C3HHeJ_T0031550.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96561804 96568766 - Kat7 protein_coding processed_transcript MGP_C3HHeJ_T0031551.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96579169 96589235 - Kat7 protein_coding processed_transcript MGP_C3HHeJ_T0031552.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96582208 96588540 - Kat7 protein_coding processed_transcript MGP_C3HHeJ_T0031553.1 MGP_C3HHeJ_G0018735.1 mouse_genomes_project 11 96585174 96588596 - Kat7 protein_coding processed_transcript MGP_C3HHeJ_T0028180.1 MGP_C3HHeJ_G0017877.1 mouse_genomes_project 11 29561016 29572106 - MGP_C3HHeJ_P0028180 Bod1 protein_coding protein_coding MGP_C3HHeJ_T0028181.1 MGP_C3HHeJ_G0017877.1 mouse_genomes_project 11 29562311 29571948 - MGP_C3HHeJ_P0028181 Bod1 protein_coding protein_coding MGP_C3HHeJ_T0030275.1 MGP_C3HHeJ_G0018408.1 mouse_genomes_project 11 73206764 73212630 + MGP_C3HHeJ_P0030275 Tax1bp3 protein_coding protein_coding MGP_C3HHeJ_T0030276.1 MGP_C3HHeJ_G0018408.1 mouse_genomes_project 11 73206932 73210367 + Tax1bp3 protein_coding processed_transcript MGP_C3HHeJ_T0030277.1 MGP_C3HHeJ_G0018408.1 mouse_genomes_project 11 73206932 73214671 + Tax1bp3 protein_coding retained_intron MGP_C3HHeJ_T0030278.1 MGP_C3HHeJ_G0018408.1 mouse_genomes_project 11 73206951 73212525 + MGP_C3HHeJ_P0030278 Tax1bp3 protein_coding protein_coding MGP_C3HHeJ_T0030345.1 MGP_C3HHeJ_G0018442.1 mouse_genomes_project 11 74360687 74361776 + MGP_C3HHeJ_P0030345 Olfr406 protein_coding protein_coding MGP_C3HHeJ_T0009646.1 MGP_C3HHeJ_G0007779.1 mouse_genomes_project 11 93091255 93091324 - Gm22702 miRNA miRNA MGP_C3HHeJ_T0101637.1 MGP_C3HHeJ_G0039603.1 mouse_genomes_project 11 58291066 58291477 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0028495.1 MGP_C3HHeJ_G0017969.1 mouse_genomes_project 11 47750342 47773667 + MGP_C3HHeJ_P0028495 Ifi47 protein_coding protein_coding MGP_C3HHeJ_T0028496.1 MGP_C3HHeJ_G0017969.1 mouse_genomes_project 11 47763511 47772129 + Ifi47 protein_coding processed_transcript MGP_C3HHeJ_T0028498.1 MGP_C3HHeJ_G0017969.1 mouse_genomes_project 11 47763850 47773665 + MGP_C3HHeJ_P0028498 Ifi47 protein_coding protein_coding MGP_C3HHeJ_T0006274.1 MGP_C3HHeJ_G0005224.1 mouse_genomes_project 11 115168809 115175994 - Gm11681 lincRNA lincRNA MGP_C3HHeJ_T0033964.1 MGP_C3HHeJ_G0019287.1 mouse_genomes_project 11 124028914 124031091 + MGP_C3HHeJ_P0033964 Tex19.1 protein_coding protein_coding MGP_C3HHeJ_T0033965.1 MGP_C3HHeJ_G0019287.1 mouse_genomes_project 11 124028928 124029639 + MGP_C3HHeJ_P0033965 Tex19.1 protein_coding protein_coding MGP_C3HHeJ_T0029086.1 MGP_C3HHeJ_G0018146.1 mouse_genomes_project 11 58553492 58570233 - MGP_C3HHeJ_P0029086 Arf1 protein_coding protein_coding MGP_C3HHeJ_T0028108.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27298991 27306011 + MGP_C3HHeJ_P0028108 Mtif2 protein_coding protein_coding MGP_C3HHeJ_T0028109.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27299019 27306530 + MGP_C3HHeJ_P0028109 Mtif2 protein_coding protein_coding MGP_C3HHeJ_T0028110.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27299030 27302849 + Mtif2 protein_coding processed_transcript MGP_C3HHeJ_T0028111.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27299031 27318249 + MGP_C3HHeJ_P0028111 Mtif2 protein_coding protein_coding MGP_C3HHeJ_T0028112.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27299033 27312756 + MGP_C3HHeJ_P0028112 Mtif2 protein_coding protein_coding MGP_C3HHeJ_T0028113.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27299040 27318246 + MGP_C3HHeJ_P0028113 Mtif2 protein_coding protein_coding MGP_C3HHeJ_T0028114.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27305903 27312863 + MGP_C3HHeJ_P0028114 Mtif2 protein_coding protein_coding MGP_C3HHeJ_T0028115.1 MGP_C3HHeJ_G0017862.1 mouse_genomes_project 11 27312561 27314622 + Mtif2 protein_coding processed_transcript MGP_C3HHeJ_T0028862.1 MGP_C3HHeJ_G0018063.1 mouse_genomes_project 11 53339267 53341685 - MGP_C3HHeJ_P0028862 Csf2 protein_coding protein_coding MGP_C3HHeJ_T0003183.1 MGP_C3HHeJ_G0002948.1 mouse_genomes_project 11 86924864 86934706 + Brip1os antisense antisense MGP_C3HHeJ_T0003184.1 MGP_C3HHeJ_G0002948.1 mouse_genomes_project 11 86924877 87032056 + Brip1os antisense antisense MGP_C3HHeJ_T0033326.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118721655 118724220 - Trim47 protein_coding processed_transcript MGP_C3HHeJ_T0033327.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118721655 118726324 - MGP_C3HHeJ_P0033327 Trim47 protein_coding protein_coding MGP_C3HHeJ_T0033328.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118721655 118726333 - MGP_C3HHeJ_P0033328 Trim47 protein_coding protein_coding MGP_C3HHeJ_T0033329.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118722112 118723184 - Trim47 protein_coding processed_transcript MGP_C3HHeJ_T0033330.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118722242 118723841 - Trim47 protein_coding processed_transcript MGP_C3HHeJ_T0033331.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118722295 118724136 - Trim47 protein_coding processed_transcript MGP_C3HHeJ_T0033332.1 MGP_C3HHeJ_G0019163.1 mouse_genomes_project 11 118723911 118745361 - Trim47 protein_coding processed_transcript MGP_C3HHeJ_T0003158.1 MGP_C3HHeJ_G0002927.1 mouse_genomes_project 11 75120178 75120900 - Gm28180 antisense antisense MGP_C3HHeJ_T0032820.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819519 108838090 + MGP_C3HHeJ_P0032820 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0032821.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819533 108835666 + MGP_C3HHeJ_P0032821 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0032822.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819533 108835244 + MGP_C3HHeJ_P0032822 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0032823.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819533 108835244 + MGP_C3HHeJ_P0032823 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0032824.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819558 108838015 + MGP_C3HHeJ_P0032824 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0032825.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819561 108838013 + MGP_C3HHeJ_P0032825 Milr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032826.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108819561 108837061 + MGP_C3HHeJ_P0032826 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0032827.1 MGP_C3HHeJ_G0019062.1 mouse_genomes_project 11 108823236 108838016 + MGP_C3HHeJ_P0032827 Milr1 protein_coding protein_coding MGP_C3HHeJ_T0028933.1 MGP_C3HHeJ_G0018080.1 mouse_genomes_project 11 54385891 54453307 - MGP_C3HHeJ_P0028933 Fat2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0029085.1 MGP_C3HHeJ_G0018145.1 mouse_genomes_project 11 58550391 58552810 + MGP_C3HHeJ_P0029085 2310033P09Rik protein_coding protein_coding MGP_C3HHeJ_T0006247.1 MGP_C3HHeJ_G0005203.1 mouse_genomes_project 11 96998353 97000303 - Gm9796 lincRNA lincRNA MGP_C3HHeJ_T0030917.1 MGP_C3HHeJ_G0018570.1 mouse_genomes_project 11 81269811 81284369 + MGP_C3HHeJ_P0030917 Tmem98 protein_coding protein_coding MGP_C3HHeJ_T0032189.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102811509 102816440 + MGP_C3HHeJ_P0032189 Mlx protein_coding protein_coding MGP_C3HHeJ_T0032190.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102811509 102816440 + MGP_C3HHeJ_P0032190 Mlx protein_coding protein_coding MGP_C3HHeJ_T0032191.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102811522 102815359 + Mlx protein_coding processed_transcript MGP_C3HHeJ_T0032192.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102811522 102815379 + Mlx protein_coding processed_transcript MGP_C3HHeJ_T0032193.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102811532 102816440 + MGP_C3HHeJ_P0032193 Mlx protein_coding protein_coding MGP_C3HHeJ_T0032194.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102811536 102813198 + MGP_C3HHeJ_P0032194 Mlx protein_coding protein_coding MGP_C3HHeJ_T0032195.1 MGP_C3HHeJ_G0018930.1 mouse_genomes_project 11 102813894 102815751 + Mlx protein_coding processed_transcript MGP_C3HHeJ_T0029410.1 MGP_C3HHeJ_G0018211.1 mouse_genomes_project 11 62179805 62225552 - MGP_C3HHeJ_P0029410 Lrrc75a protein_coding protein_coding MGP_C3HHeJ_T0029411.1 MGP_C3HHeJ_G0018211.1 mouse_genomes_project 11 62180744 62225069 - Lrrc75a protein_coding processed_transcript MGP_C3HHeJ_T0029412.1 MGP_C3HHeJ_G0018211.1 mouse_genomes_project 11 62180948 62225078 - Lrrc75a protein_coding processed_transcript MGP_C3HHeJ_T0003114.1 MGP_C3HHeJ_G0002892.1 mouse_genomes_project 11 58717098 58721476 + Gm15755 antisense antisense MGP_C3HHeJ_T0000821.1 MGP_C3HHeJ_G0000762.1 mouse_genomes_project 11 107980222 107981756 + TEC TEC MGP_C3HHeJ_T0031989.1 MGP_C3HHeJ_G0018847.1 mouse_genomes_project 11 100969208 100975779 - MGP_C3HHeJ_P0031989 Krt12 protein_coding protein_coding MGP_C3HHeJ_T0032971.1 MGP_C3HHeJ_G0019091.1 mouse_genomes_project 11 112165062 112232600 - MGP_C3HHeJ_P0032971 Abca8b protein_coding protein_coding MGP_C3HHeJ_T0032972.1 MGP_C3HHeJ_G0019091.1 mouse_genomes_project 11 112167145 112232498 - MGP_C3HHeJ_P0032972 Abca8b protein_coding protein_coding MGP_C3HHeJ_T0009649.1 MGP_C3HHeJ_G0007782.1 mouse_genomes_project 11 97659157 97659267 + Mir10a miRNA miRNA MGP_C3HHeJ_T0028023.1 MGP_C3HHeJ_G0017844.1 mouse_genomes_project 11 21109447 21181243 - MGP_C3HHeJ_P0028023 0610010F05Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028024.1 MGP_C3HHeJ_G0017844.1 mouse_genomes_project 11 21117773 21181234 - MGP_C3HHeJ_P0028024 0610010F05Rik protein_coding protein_coding MGP_C3HHeJ_T0028025.1 MGP_C3HHeJ_G0017844.1 mouse_genomes_project 11 21121162 21139796 - MGP_C3HHeJ_P0028025 0610010F05Rik protein_coding protein_coding MGP_C3HHeJ_T0028026.1 MGP_C3HHeJ_G0017844.1 mouse_genomes_project 11 21176570 21181325 - MGP_C3HHeJ_P0028026 0610010F05Rik protein_coding protein_coding MGP_C3HHeJ_T0030681.1 MGP_C3HHeJ_G0018514.1 mouse_genomes_project 11 78334047 78356950 + MGP_C3HHeJ_P0030681 Flot2 protein_coding protein_coding MGP_C3HHeJ_T0030682.1 MGP_C3HHeJ_G0018514.1 mouse_genomes_project 11 78334047 78356950 + MGP_C3HHeJ_P0030682 Flot2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030683.1 MGP_C3HHeJ_G0018514.1 mouse_genomes_project 11 78334057 78356947 + MGP_C3HHeJ_P0030683 Flot2 protein_coding protein_coding MGP_C3HHeJ_T0030684.1 MGP_C3HHeJ_G0018514.1 mouse_genomes_project 11 78334100 78356950 + MGP_C3HHeJ_P0030684 Flot2 protein_coding protein_coding MGP_C3HHeJ_T0030685.1 MGP_C3HHeJ_G0018514.1 mouse_genomes_project 11 78336420 78356950 + Flot2 protein_coding processed_transcript MGP_C3HHeJ_T0101639.1 MGP_C3HHeJ_G0039605.1 mouse_genomes_project 11 73523272 73523357 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0016935.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14254111 14273606 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0016936.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14254116 14273625 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0016937.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14254279 14273549 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0016938.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14254543 14273607 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0016939.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14254586 14273789 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0016940.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14254659 14273589 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0016941.1 MGP_C3HHeJ_G0014914.1 mouse_genomes_project 11 14258129 14273594 - Eldr processed_transcript processed_transcript MGP_C3HHeJ_T0031508.1 MGP_C3HHeJ_G0018722.1 mouse_genomes_project 11 95898729 95908555 - MGP_C3HHeJ_P0031508 Gm11541 protein_coding protein_coding MGP_C3HHeJ_T0030302.1 MGP_C3HHeJ_G0018415.1 mouse_genomes_project 11 73394261 73398270 + MGP_C3HHeJ_P0030302 Olfr20 protein_coding protein_coding MGP_C3HHeJ_T0030303.1 MGP_C3HHeJ_G0018415.1 mouse_genomes_project 11 73397161 73398222 + MGP_C3HHeJ_P0030303 Olfr20 protein_coding protein_coding MGP_C3HHeJ_T0012558.1 MGP_C3HHeJ_G0010662.1 mouse_genomes_project 11 77917960 77918727 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028879.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53621953 53800189 + MGP_C3HHeJ_P0028879 Rapgef6 protein_coding protein_coding MGP_C3HHeJ_T0028880.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53621995 53656250 + Rapgef6 protein_coding processed_transcript MGP_C3HHeJ_T0028881.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53621996 53734331 + MGP_C3HHeJ_P0028881 Rapgef6 protein_coding protein_coding MGP_C3HHeJ_T0028882.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53621996 53797883 + MGP_C3HHeJ_P0028882 Rapgef6 protein_coding protein_coding MGP_C3HHeJ_T0028883.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53622017 53664841 + Rapgef6 protein_coding processed_transcript MGP_C3HHeJ_T0028884.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53622156 53797009 + MGP_C3HHeJ_P0028884 Rapgef6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0028885.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53693910 53738186 + Rapgef6 protein_coding processed_transcript MGP_C3HHeJ_T0028886.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53721687 53787372 + MGP_C3HHeJ_P0028886 Rapgef6 protein_coding protein_coding MGP_C3HHeJ_T0028887.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53721687 53787451 + MGP_C3HHeJ_P0028887 Rapgef6 protein_coding protein_coding MGP_C3HHeJ_T0028888.1 MGP_C3HHeJ_G0018068.1 mouse_genomes_project 11 53790778 53797390 + MGP_C3HHeJ_P0028888 Rapgef6 protein_coding protein_coding MGP_C3HHeJ_T0030884.1 MGP_C3HHeJ_G0018564.1 mouse_genomes_project 11 80728128 80787237 + MGP_C3HHeJ_P0030884 Rhbdl3 protein_coding protein_coding MGP_C3HHeJ_T0030885.1 MGP_C3HHeJ_G0018564.1 mouse_genomes_project 11 80747653 80752122 + Rhbdl3 protein_coding retained_intron MGP_C3HHeJ_T0030886.1 MGP_C3HHeJ_G0018564.1 mouse_genomes_project 11 80776616 80784964 + Rhbdl3 protein_coding retained_intron MGP_C3HHeJ_T0003243.1 MGP_C3HHeJ_G0002995.1 mouse_genomes_project 11 106202948 106211389 - Gm11659 antisense antisense MGP_C3HHeJ_T0006124.1 MGP_C3HHeJ_G0005108.1 mouse_genomes_project 11 22899957 22923981 + Gm12069 lincRNA lincRNA MGP_C3HHeJ_T0012592.1 MGP_C3HHeJ_G0010696.1 mouse_genomes_project 11 91852956 91854538 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097986.1 MGP_C3HHeJ_G0036198.1 mouse_genomes_project 11 3271699 3271813 + n-R5s67 rRNA rRNA MGP_C3HHeJ_T0012473.1 MGP_C3HHeJ_G0010577.1 mouse_genomes_project 11 47764924 47765234 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030140.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70942427 70963120 - MGP_C3HHeJ_P0030140 Dhx33 protein_coding protein_coding MGP_C3HHeJ_T0030141.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70944847 70952312 - MGP_C3HHeJ_P0030141 Dhx33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030142.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70945088 70963103 - MGP_C3HHeJ_P0030142 Dhx33 protein_coding protein_coding MGP_C3HHeJ_T0030143.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70945088 70963023 - MGP_C3HHeJ_P0030143 Dhx33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030144.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70950046 70953520 - Dhx33 protein_coding retained_intron MGP_C3HHeJ_T0030145.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70950456 70954325 - MGP_C3HHeJ_P0030145 Dhx33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030146.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70951441 70952349 - Dhx33 protein_coding retained_intron MGP_C3HHeJ_T0030147.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70953547 70959256 - Dhx33 protein_coding processed_transcript MGP_C3HHeJ_T0030148.1 MGP_C3HHeJ_G0018374.1 mouse_genomes_project 11 70957455 70963120 - Dhx33 protein_coding retained_intron MGP_C3HHeJ_T0032741.1 MGP_C3HHeJ_G0019040.1 mouse_genomes_project 11 108034272 108045004 + MGP_C3HHeJ_P0032741 Ace3 protein_coding protein_coding MGP_C3HHeJ_T0006281.1 MGP_C3HHeJ_G0005227.1 mouse_genomes_project 11 115595332 115606476 - lincRNA lincRNA MGP_C3HHeJ_T0030343.1 MGP_C3HHeJ_G0018440.1 mouse_genomes_project 11 74272116 74279075 + protein_coding processed_transcript MGP_C3HHeJ_T0029395.1 MGP_C3HHeJ_G0018207.1 mouse_genomes_project 11 62025185 62085787 + MGP_C3HHeJ_P0029395 Pigl protein_coding protein_coding MGP_C3HHeJ_T0029396.1 MGP_C3HHeJ_G0018207.1 mouse_genomes_project 11 62025333 62082493 + Pigl protein_coding processed_transcript MGP_C3HHeJ_T0028961.1 MGP_C3HHeJ_G0018090.1 mouse_genomes_project 11 56839258 56988265 + MGP_C3HHeJ_P0028961 Galnt10 protein_coding protein_coding MGP_C3HHeJ_T0028962.1 MGP_C3HHeJ_G0018090.1 mouse_genomes_project 11 56839281 56928691 + MGP_C3HHeJ_P0028962 Galnt10 protein_coding protein_coding MGP_C3HHeJ_T0031279.1 MGP_C3HHeJ_G0018666.1 mouse_genomes_project 11 88594370 88608018 + MGP_C3HHeJ_P0031279 Mpo protein_coding protein_coding MGP_C3HHeJ_T0031280.1 MGP_C3HHeJ_G0018666.1 mouse_genomes_project 11 88595740 88597952 + MGP_C3HHeJ_P0031280 Mpo protein_coding protein_coding MGP_C3HHeJ_T0031281.1 MGP_C3HHeJ_G0018666.1 mouse_genomes_project 11 88596154 88608018 + MGP_C3HHeJ_P0031281 Mpo protein_coding protein_coding MGP_C3HHeJ_T0031282.1 MGP_C3HHeJ_G0018666.1 mouse_genomes_project 11 88597103 88602556 + MGP_C3HHeJ_P0031282 Mpo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031283.1 MGP_C3HHeJ_G0018666.1 mouse_genomes_project 11 88606146 88607430 + MGP_C3HHeJ_P0031283 Mpo protein_coding protein_coding MGP_C3HHeJ_T0031284.1 MGP_C3HHeJ_G0018666.1 mouse_genomes_project 11 88606721 88607978 + Mpo protein_coding retained_intron MGP_C3HHeJ_T0031115.1 MGP_C3HHeJ_G0018631.1 mouse_genomes_project 11 85638852 85644250 + Car4 protein_coding retained_intron MGP_C3HHeJ_T0031116.1 MGP_C3HHeJ_G0018631.1 mouse_genomes_project 11 85638854 85647774 + MGP_C3HHeJ_P0031116 Car4 protein_coding protein_coding MGP_C3HHeJ_T0031117.1 MGP_C3HHeJ_G0018631.1 mouse_genomes_project 11 85638877 85643613 + Car4 protein_coding processed_transcript MGP_C3HHeJ_T0031118.1 MGP_C3HHeJ_G0018631.1 mouse_genomes_project 11 85638891 85646293 + MGP_C3HHeJ_P0031118 Car4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031119.1 MGP_C3HHeJ_G0018631.1 mouse_genomes_project 11 85639170 85645958 + MGP_C3HHeJ_P0031119 Car4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031120.1 MGP_C3HHeJ_G0018631.1 mouse_genomes_project 11 85642649 85647764 + MGP_C3HHeJ_P0031120 Car4 protein_coding protein_coding MGP_C3HHeJ_T0012622.1 MGP_C3HHeJ_G0010726.1 mouse_genomes_project 11 104608715 104609510 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003198.1 MGP_C3HHeJ_G0002958.1 mouse_genomes_project 11 96589455 96602288 + Gm11520 antisense antisense MGP_C3HHeJ_T0031830.1 MGP_C3HHeJ_G0018806.1 mouse_genomes_project 11 99611592 99654514 - MGP_C3HHeJ_P0031830 Med1 protein_coding protein_coding MGP_C3HHeJ_T0031831.1 MGP_C3HHeJ_G0018806.1 mouse_genomes_project 11 99611595 99654691 - MGP_C3HHeJ_P0031831 Med1 protein_coding protein_coding MGP_C3HHeJ_T0031832.1 MGP_C3HHeJ_G0018806.1 mouse_genomes_project 11 99612452 99623215 - Med1 protein_coding processed_transcript MGP_C3HHeJ_T0031833.1 MGP_C3HHeJ_G0018806.1 mouse_genomes_project 11 99617179 99620449 - Med1 protein_coding processed_transcript MGP_C3HHeJ_T0031834.1 MGP_C3HHeJ_G0018806.1 mouse_genomes_project 11 99628620 99640238 - Med1 protein_coding processed_transcript MGP_C3HHeJ_T0031835.1 MGP_C3HHeJ_G0018806.1 mouse_genomes_project 11 99629167 99654707 - Med1 protein_coding processed_transcript MGP_C3HHeJ_T0003053.1 MGP_C3HHeJ_G0002840.1 mouse_genomes_project 11 8938758 8940065 - Gm12000 antisense antisense MGP_C3HHeJ_T0012461.1 MGP_C3HHeJ_G0010565.1 mouse_genomes_project 11 42000631 42001832 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032855.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109063686 109074661 - MGP_C3HHeJ_P0032855 Gm10184 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032856.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109063686 109074762 - MGP_C3HHeJ_P0032856 Gm10184 protein_coding protein_coding MGP_C3HHeJ_T0032857.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109066607 109068133 - Gm10184 protein_coding retained_intron MGP_C3HHeJ_T0032858.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109066907 109073708 - MGP_C3HHeJ_P0032858 Gm10184 protein_coding protein_coding MGP_C3HHeJ_T0032859.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109066907 109074000 - MGP_C3HHeJ_P0032859 Gm10184 protein_coding protein_coding MGP_C3HHeJ_T0032860.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109066927 109074671 - MGP_C3HHeJ_P0032860 Gm10184 protein_coding protein_coding MGP_C3HHeJ_T0032861.1 MGP_C3HHeJ_G0019067.1 mouse_genomes_project 11 109071427 109074590 - MGP_C3HHeJ_P0032861 Gm10184 protein_coding protein_coding MGP_C3HHeJ_T0029488.1 MGP_C3HHeJ_G0018232.1 mouse_genomes_project 11 65500141 65840484 - MGP_C3HHeJ_P0029488 Dnah9 protein_coding protein_coding MGP_C3HHeJ_T0029489.1 MGP_C3HHeJ_G0018232.1 mouse_genomes_project 11 65500262 65674739 - MGP_C3HHeJ_P0029489 Dnah9 protein_coding protein_coding MGP_C3HHeJ_T0029490.1 MGP_C3HHeJ_G0018232.1 mouse_genomes_project 11 65519589 65524758 - Dnah9 protein_coding retained_intron MGP_C3HHeJ_T0029491.1 MGP_C3HHeJ_G0018232.1 mouse_genomes_project 11 65573095 65597734 - MGP_C3HHeJ_P0029491 Dnah9 protein_coding protein_coding MGP_C3HHeJ_T0029492.1 MGP_C3HHeJ_G0018232.1 mouse_genomes_project 11 65793305 65840395 - MGP_C3HHeJ_P0029492 Dnah9 protein_coding protein_coding MGP_C3HHeJ_T0029493.1 MGP_C3HHeJ_G0018232.1 mouse_genomes_project 11 65830724 65840502 - Dnah9 protein_coding retained_intron MGP_C3HHeJ_T0032955.1 MGP_C3HHeJ_G0019087.1 mouse_genomes_project 11 111797131 111837449 - MGP_C3HHeJ_P0032955 Wipi1 protein_coding protein_coding MGP_C3HHeJ_T0032956.1 MGP_C3HHeJ_G0019087.1 mouse_genomes_project 11 111798924 111837449 - MGP_C3HHeJ_P0032956 Wipi1 protein_coding protein_coding MGP_C3HHeJ_T0032957.1 MGP_C3HHeJ_G0019087.1 mouse_genomes_project 11 111805864 111837449 - MGP_C3HHeJ_P0032957 Wipi1 protein_coding protein_coding MGP_C3HHeJ_T0032958.1 MGP_C3HHeJ_G0019087.1 mouse_genomes_project 11 111837255 111837984 - Wipi1 protein_coding processed_transcript MGP_C3HHeJ_T0029809.1 MGP_C3HHeJ_G0018308.1 mouse_genomes_project 11 69668088 69673655 - MGP_C3HHeJ_P0029809 Fgf11 protein_coding protein_coding MGP_C3HHeJ_T0029810.1 MGP_C3HHeJ_G0018308.1 mouse_genomes_project 11 69668093 69673796 - MGP_C3HHeJ_P0029810 Fgf11 protein_coding protein_coding MGP_C3HHeJ_T0027757.1 MGP_C3HHeJ_G0017781.1 mouse_genomes_project 11 3641564 3649286 - MGP_C3HHeJ_P0027757 Nacad protein_coding protein_coding MGP_C3HHeJ_T0027758.1 MGP_C3HHeJ_G0017781.1 mouse_genomes_project 11 3641638 3643140 - MGP_C3HHeJ_P0027758 Nacad protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027759.1 MGP_C3HHeJ_G0017781.1 mouse_genomes_project 11 3641649 3643692 - MGP_C3HHeJ_P0027759 Nacad protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027545.1 MGP_C3HHeJ_G0017733.1 mouse_genomes_project 11 1114547 1118732 + MGP_C3HHeJ_P0027545 Gatsl3 protein_coding protein_coding MGP_C3HHeJ_T0006167.1 MGP_C3HHeJ_G0005144.1 mouse_genomes_project 11 57200740 57203670 - Gm12249 lincRNA lincRNA MGP_C3HHeJ_T0028236.1 MGP_C3HHeJ_G0017891.1 mouse_genomes_project 11 30459899 30466253 - MGP_C3HHeJ_P0028236 Efcab9 protein_coding protein_coding MGP_C3HHeJ_T0028237.1 MGP_C3HHeJ_G0017891.1 mouse_genomes_project 11 30460488 30470672 - MGP_C3HHeJ_P0028237 Efcab9 protein_coding protein_coding MGP_C3HHeJ_T0031489.1 MGP_C3HHeJ_G0018717.1 mouse_genomes_project 11 95766565 95770645 + MGP_C3HHeJ_P0031489 Chad protein_coding protein_coding MGP_C3HHeJ_T0028590.1 MGP_C3HHeJ_G0017995.1 mouse_genomes_project 11 49000694 49020705 + MGP_C3HHeJ_P0028590 Mgat4b protein_coding protein_coding MGP_C3HHeJ_T0028591.1 MGP_C3HHeJ_G0017995.1 mouse_genomes_project 11 49014940 49025717 + MGP_C3HHeJ_P0028591 Mgat4b protein_coding protein_coding MGP_C3HHeJ_T0028592.1 MGP_C3HHeJ_G0017995.1 mouse_genomes_project 11 49020345 49025717 + MGP_C3HHeJ_P0028592 Mgat4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028593.1 MGP_C3HHeJ_G0017995.1 mouse_genomes_project 11 49020353 49022381 + Mgat4b protein_coding retained_intron MGP_C3HHeJ_T0028594.1 MGP_C3HHeJ_G0017995.1 mouse_genomes_project 11 49024636 49025531 + Mgat4b protein_coding retained_intron MGP_C3HHeJ_T0028544.1 MGP_C3HHeJ_G0017984.1 mouse_genomes_project 11 48208328 48209362 + MGP_C3HHeJ_P0028544 Olfr1384 protein_coding protein_coding MGP_C3HHeJ_T0031045.1 MGP_C3HHeJ_G0018617.1 mouse_genomes_project 11 84566205 84588101 + MGP_C3HHeJ_P0031045 Ddx52 protein_coding protein_coding MGP_C3HHeJ_T0031046.1 MGP_C3HHeJ_G0018617.1 mouse_genomes_project 11 84570421 84577223 + Ddx52 protein_coding processed_transcript MGP_C3HHeJ_T0029813.1 MGP_C3HHeJ_G0018311.1 mouse_genomes_project 11 69694676 69695981 - MGP_C3HHeJ_P0029813 Spem1 protein_coding protein_coding MGP_C3HHeJ_T0000812.1 MGP_C3HHeJ_G0000753.1 mouse_genomes_project 11 16247644 16249201 - TEC TEC MGP_C3HHeJ_T0033997.1 MGP_C3HHeJ_G0019296.1 mouse_genomes_project 11 124313563 124323487 + MGP_C3HHeJ_P0033997 Fn3krp protein_coding protein_coding MGP_C3HHeJ_T0028953.1 MGP_C3HHeJ_G0018088.1 mouse_genomes_project 11 56683185 56719300 - MGP_C3HHeJ_P0028953 Fam114a2 protein_coding protein_coding MGP_C3HHeJ_T0028954.1 MGP_C3HHeJ_G0018088.1 mouse_genomes_project 11 56683988 56719286 - MGP_C3HHeJ_P0028954 Fam114a2 protein_coding protein_coding MGP_C3HHeJ_T0028955.1 MGP_C3HHeJ_G0018088.1 mouse_genomes_project 11 56706049 56708083 - Fam114a2 protein_coding processed_transcript MGP_C3HHeJ_T0028956.1 MGP_C3HHeJ_G0018088.1 mouse_genomes_project 11 56708029 56719285 - Fam114a2 protein_coding processed_transcript MGP_C3HHeJ_T0028038.1 MGP_C3HHeJ_G0017847.1 mouse_genomes_project 11 21287087 21323049 - MGP_C3HHeJ_P0028038 Rel protein_coding protein_coding MGP_C3HHeJ_T0098780.1 MGP_C3HHeJ_G0036974.1 mouse_genomes_project 11 65283518 65283628 + Gm26128 snRNA snRNA MGP_C3HHeJ_T0030987.1 MGP_C3HHeJ_G0018596.1 mouse_genomes_project 11 83756182 83785470 + MGP_C3HHeJ_P0030987 Slfn3 protein_coding protein_coding MGP_C3HHeJ_T0101647.1 MGP_C3HHeJ_G0039613.1 mouse_genomes_project 11 76336164 76336626 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012547.1 MGP_C3HHeJ_G0010651.1 mouse_genomes_project 11 73917935 73919755 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031597.1 MGP_C3HHeJ_G0018748.1 mouse_genomes_project 11 97274009 97327310 - MGP_C3HHeJ_P0031597 Igf2bp1 protein_coding protein_coding MGP_C3HHeJ_T0031598.1 MGP_C3HHeJ_G0018748.1 mouse_genomes_project 11 97281180 97285626 - Igf2bp1 protein_coding processed_transcript MGP_C3HHeJ_T0031599.1 MGP_C3HHeJ_G0018748.1 mouse_genomes_project 11 97292006 97301497 - Igf2bp1 protein_coding processed_transcript MGP_C3HHeJ_T0031600.1 MGP_C3HHeJ_G0018748.1 mouse_genomes_project 11 97292841 97301514 - Igf2bp1 protein_coding processed_transcript MGP_C3HHeJ_T0031601.1 MGP_C3HHeJ_G0018748.1 mouse_genomes_project 11 97297302 97301511 - Igf2bp1 protein_coding processed_transcript MGP_C3HHeJ_T0030758.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78653577 78659248 + MGP_C3HHeJ_P0030758 Unc119 protein_coding protein_coding MGP_C3HHeJ_T0030759.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78653593 78657933 + Unc119 protein_coding retained_intron MGP_C3HHeJ_T0030760.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78653601 78659248 + MGP_C3HHeJ_P0030760 Unc119 protein_coding protein_coding MGP_C3HHeJ_T0030761.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78653640 78658980 + Unc119 protein_coding retained_intron MGP_C3HHeJ_T0030762.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78656749 78659063 + MGP_C3HHeJ_P0030762 Unc119 protein_coding protein_coding MGP_C3HHeJ_T0030763.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78656994 78658203 + Unc119 protein_coding retained_intron MGP_C3HHeJ_T0030764.1 MGP_C3HHeJ_G0018530.1 mouse_genomes_project 11 78658018 78659082 + Unc119 protein_coding retained_intron MGP_C3HHeJ_T0029072.1 MGP_C3HHeJ_G0018142.1 mouse_genomes_project 11 58517777 58525081 - MGP_C3HHeJ_P0029072 Gjc2 protein_coding protein_coding MGP_C3HHeJ_T0029073.1 MGP_C3HHeJ_G0018142.1 mouse_genomes_project 11 58517777 58525468 - MGP_C3HHeJ_P0029073 Gjc2 protein_coding protein_coding MGP_C3HHeJ_T0003290.1 MGP_C3HHeJ_G0003035.1 mouse_genomes_project 11 123055568 123056457 - Gm11772 antisense antisense MGP_C3HHeJ_T0009620.1 MGP_C3HHeJ_G0007753.1 mouse_genomes_project 11 70640283 70640353 + Mir6925 miRNA miRNA MGP_C3HHeJ_T0003110.1 MGP_C3HHeJ_G0002889.1 mouse_genomes_project 11 58203052 58204891 + Gm12256 antisense antisense MGP_C3HHeJ_T0009579.1 MGP_C3HHeJ_G0007712.1 mouse_genomes_project 11 30954773 30954857 - Gm26052 miRNA miRNA MGP_C3HHeJ_T0003261.1 MGP_C3HHeJ_G0003011.1 mouse_genomes_project 11 110704242 110708801 - Cep112os1 antisense antisense MGP_C3HHeJ_T0032234.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991473 102996279 + MGP_C3HHeJ_P0032234 Vps25 protein_coding protein_coding MGP_C3HHeJ_T0032235.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991473 102997779 + MGP_C3HHeJ_P0032235 Vps25 protein_coding protein_coding MGP_C3HHeJ_T0032236.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991495 102997775 + MGP_C3HHeJ_P0032236 Vps25 protein_coding protein_coding MGP_C3HHeJ_T0032237.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991496 102997146 + MGP_C3HHeJ_P0032237 Vps25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032238.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991501 102997553 + MGP_C3HHeJ_P0032238 Vps25 protein_coding protein_coding MGP_C3HHeJ_T0032239.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991519 102997286 + MGP_C3HHeJ_P0032239 Vps25 protein_coding protein_coding MGP_C3HHeJ_T0032240.1 MGP_C3HHeJ_G0018940.1 mouse_genomes_project 11 102991530 102997440 + Vps25 protein_coding retained_intron MGP_C3HHeJ_T0003215.1 MGP_C3HHeJ_G0002972.1 mouse_genomes_project 11 99150571 99152636 + Gm11614 antisense antisense MGP_C3HHeJ_T0100006.1 MGP_C3HHeJ_G0038200.1 mouse_genomes_project 11 33264645 33264782 + Gm26070 snoRNA snoRNA MGP_C3HHeJ_T0006123.1 MGP_C3HHeJ_G0005107.1 mouse_genomes_project 11 22828397 22970597 + 4933427E13Rik lincRNA lincRNA MGP_C3HHeJ_T0006125.1 MGP_C3HHeJ_G0005107.1 mouse_genomes_project 11 22927271 22970601 + 4933427E13Rik lincRNA lincRNA MGP_C3HHeJ_T0006126.1 MGP_C3HHeJ_G0005107.1 mouse_genomes_project 11 22927300 22931964 + 4933427E13Rik lincRNA lincRNA MGP_C3HHeJ_T0006127.1 MGP_C3HHeJ_G0005107.1 mouse_genomes_project 11 22931202 22961657 + 4933427E13Rik lincRNA lincRNA MGP_C3HHeJ_T0031387.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94240912 94242750 + Car10 protein_coding processed_transcript MGP_C3HHeJ_T0031388.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94241288 94662148 + MGP_C3HHeJ_P0031388 Car10 protein_coding protein_coding MGP_C3HHeJ_T0031389.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94241288 94531517 + MGP_C3HHeJ_P0031389 Car10 protein_coding protein_coding MGP_C3HHeJ_T0031390.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94241288 94775154 + MGP_C3HHeJ_P0031390 Car10 protein_coding protein_coding MGP_C3HHeJ_T0031391.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94241298 94774687 + MGP_C3HHeJ_P0031391 Car10 protein_coding protein_coding MGP_C3HHeJ_T0031392.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94242173 94332616 + MGP_C3HHeJ_P0031392 Car10 protein_coding protein_coding MGP_C3HHeJ_T0031393.1 MGP_C3HHeJ_G0018698.1 mouse_genomes_project 11 94242173 94775158 + MGP_C3HHeJ_P0031393 Car10 protein_coding protein_coding MGP_C3HHeJ_T0027818.1 MGP_C3HHeJ_G0017798.1 mouse_genomes_project 11 8695438 8721937 + protein_coding processed_transcript MGP_C3HHeJ_T0027819.1 MGP_C3HHeJ_G0017798.1 mouse_genomes_project 11 8697597 8751656 + MGP_C3HHeJ_P0027819 protein_coding protein_coding MGP_C3HHeJ_T0027820.1 MGP_C3HHeJ_G0017798.1 mouse_genomes_project 11 8722665 8751654 + MGP_C3HHeJ_P0027820 protein_coding protein_coding MGP_C3HHeJ_T0029805.1 MGP_C3HHeJ_G0018307.1 mouse_genomes_project 11 69654896 69667964 - MGP_C3HHeJ_P0029805 Chrnb1 protein_coding protein_coding MGP_C3HHeJ_T0029806.1 MGP_C3HHeJ_G0018307.1 mouse_genomes_project 11 69664724 69666291 - Chrnb1 protein_coding retained_intron MGP_C3HHeJ_T0029807.1 MGP_C3HHeJ_G0018307.1 mouse_genomes_project 11 69664799 69665835 - Chrnb1 protein_coding retained_intron MGP_C3HHeJ_T0029808.1 MGP_C3HHeJ_G0018307.1 mouse_genomes_project 11 69665534 69667926 - Chrnb1 protein_coding processed_transcript MGP_C3HHeJ_T0027890.1 MGP_C3HHeJ_G0017814.1 mouse_genomes_project 11 14602736 14608054 + C1d protein_coding processed_transcript MGP_C3HHeJ_T0027891.1 MGP_C3HHeJ_G0017814.1 mouse_genomes_project 11 14602749 14609437 + C1d protein_coding processed_transcript MGP_C3HHeJ_T0027892.1 MGP_C3HHeJ_G0017814.1 mouse_genomes_project 11 14602751 14614316 + MGP_C3HHeJ_P0027892 C1d protein_coding protein_coding MGP_C3HHeJ_T0027893.1 MGP_C3HHeJ_G0017814.1 mouse_genomes_project 11 14602845 14611765 + MGP_C3HHeJ_P0027893 C1d protein_coding protein_coding MGP_C3HHeJ_T0027894.1 MGP_C3HHeJ_G0017814.1 mouse_genomes_project 11 14608763 14611701 + C1d protein_coding processed_transcript MGP_C3HHeJ_T0006272.1 MGP_C3HHeJ_G0005222.1 mouse_genomes_project 11 114126960 114131331 - Gm11674 lincRNA lincRNA MGP_C3HHeJ_T0012460.1 MGP_C3HHeJ_G0010564.1 mouse_genomes_project 11 41842793 41843083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012549.1 MGP_C3HHeJ_G0010653.1 mouse_genomes_project 11 74415031 74415953 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012410.1 MGP_C3HHeJ_G0010514.1 mouse_genomes_project 11 19428203 19428767 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028341.1 MGP_C3HHeJ_G0017921.1 mouse_genomes_project 11 40637839 40652921 - MGP_C3HHeJ_P0028341 Gabra6 protein_coding protein_coding MGP_C3HHeJ_T0028342.1 MGP_C3HHeJ_G0017921.1 mouse_genomes_project 11 40637840 40652923 - MGP_C3HHeJ_P0028342 Gabra6 protein_coding protein_coding MGP_C3HHeJ_T0028343.1 MGP_C3HHeJ_G0017921.1 mouse_genomes_project 11 40638662 40652944 - MGP_C3HHeJ_P0028343 Gabra6 protein_coding protein_coding MGP_C3HHeJ_T0012382.1 MGP_C3HHeJ_G0010486.1 mouse_genomes_project 11 13950944 13951857 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012384.1 MGP_C3HHeJ_G0010488.1 mouse_genomes_project 11 14432578 14432733 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033666.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283380 122303802 + MGP_C3HHeJ_P0033666 Endov protein_coding protein_coding MGP_C3HHeJ_T0033667.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283407 122299785 + MGP_C3HHeJ_P0033667 Endov protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033668.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283408 122301673 + MGP_C3HHeJ_P0033668 Endov protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033669.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283422 122299845 + MGP_C3HHeJ_P0033669 Endov protein_coding protein_coding MGP_C3HHeJ_T0033670.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283459 122299473 + MGP_C3HHeJ_P0033670 Endov protein_coding protein_coding MGP_C3HHeJ_T0033671.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283584 122297074 + MGP_C3HHeJ_P0033671 Endov protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033672.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283663 122303813 + MGP_C3HHeJ_P0033672 Endov protein_coding protein_coding MGP_C3HHeJ_T0033673.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283709 122292777 + Endov protein_coding retained_intron MGP_C3HHeJ_T0033674.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122283818 122294787 + Endov protein_coding processed_transcript MGP_C3HHeJ_T0033675.1 MGP_C3HHeJ_G0019232.1 mouse_genomes_project 11 122293937 122299483 + Endov protein_coding retained_intron MGP_C3HHeJ_T0009569.1 MGP_C3HHeJ_G0007702.1 mouse_genomes_project 11 18805379 18805467 - Mir1933 miRNA miRNA MGP_C3HHeJ_T0030490.1 MGP_C3HHeJ_G0018475.1 mouse_genomes_project 11 75900916 75936671 + MGP_C3HHeJ_P0030490 Ywhae protein_coding protein_coding MGP_C3HHeJ_T0030491.1 MGP_C3HHeJ_G0018475.1 mouse_genomes_project 11 75900960 75935451 + MGP_C3HHeJ_P0030491 Ywhae protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030492.1 MGP_C3HHeJ_G0018475.1 mouse_genomes_project 11 75901008 75925561 + Ywhae protein_coding retained_intron MGP_C3HHeJ_T0030493.1 MGP_C3HHeJ_G0018475.1 mouse_genomes_project 11 75901195 75925317 + MGP_C3HHeJ_P0030493 Ywhae protein_coding protein_coding MGP_C3HHeJ_T0030494.1 MGP_C3HHeJ_G0018475.1 mouse_genomes_project 11 75920038 75929101 + Ywhae protein_coding retained_intron MGP_C3HHeJ_T0012609.1 MGP_C3HHeJ_G0010713.1 mouse_genomes_project 11 101258700 101260491 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029030.1 MGP_C3HHeJ_G0018122.1 mouse_genomes_project 11 58014957 58015923 - MGP_C3HHeJ_P0029030 protein_coding protein_coding MGP_C3HHeJ_T0012417.1 MGP_C3HHeJ_G0010521.1 mouse_genomes_project 11 24037989 24038983 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028071.1 MGP_C3HHeJ_G0017854.1 mouse_genomes_project 11 24218577 24219198 + MGP_C3HHeJ_P0028071 Gm6899 protein_coding protein_coding MGP_C3HHeJ_T0012621.1 MGP_C3HHeJ_G0010725.1 mouse_genomes_project 11 104532307 104533034 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031494.1 MGP_C3HHeJ_G0018719.1 mouse_genomes_project 11 95846279 95855187 - MGP_C3HHeJ_P0031494 Eme1 protein_coding protein_coding MGP_C3HHeJ_T0031495.1 MGP_C3HHeJ_G0018719.1 mouse_genomes_project 11 95848996 95851809 - Eme1 protein_coding processed_transcript MGP_C3HHeJ_T0031496.1 MGP_C3HHeJ_G0018719.1 mouse_genomes_project 11 95851172 95851984 - Eme1 protein_coding processed_transcript MGP_C3HHeJ_T0031497.1 MGP_C3HHeJ_G0018719.1 mouse_genomes_project 11 95851853 95854894 - Eme1 protein_coding processed_transcript MGP_C3HHeJ_T0030989.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83876780 83881115 - MGP_C3HHeJ_P0030989 Pex12 protein_coding protein_coding MGP_C3HHeJ_T0030990.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83877213 83881033 - MGP_C3HHeJ_P0030990 Pex12 protein_coding protein_coding MGP_C3HHeJ_T0030991.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83877213 83881080 - MGP_C3HHeJ_P0030991 Pex12 protein_coding protein_coding MGP_C3HHeJ_T0030992.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83877214 83881035 - MGP_C3HHeJ_P0030992 Pex12 protein_coding protein_coding MGP_C3HHeJ_T0030993.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83880041 83881076 - Pex12 protein_coding processed_transcript MGP_C3HHeJ_T0030994.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83880167 83884721 - MGP_C3HHeJ_P0030994 Pex12 protein_coding protein_coding MGP_C3HHeJ_T0030995.1 MGP_C3HHeJ_G0018598.1 mouse_genomes_project 11 83880466 83881096 - MGP_C3HHeJ_P0030995 Pex12 protein_coding protein_coding MGP_C3HHeJ_T0028296.1 MGP_C3HHeJ_G0017912.1 mouse_genomes_project 11 33886331 33912475 - MGP_C3HHeJ_P0028296 Rars protein_coding protein_coding MGP_C3HHeJ_T0028297.1 MGP_C3HHeJ_G0017912.1 mouse_genomes_project 11 33893618 33898060 - Rars protein_coding processed_transcript MGP_C3HHeJ_T0028298.1 MGP_C3HHeJ_G0017912.1 mouse_genomes_project 11 33895378 33899454 - Rars protein_coding retained_intron MGP_C3HHeJ_T0028299.1 MGP_C3HHeJ_G0017912.1 mouse_genomes_project 11 33899087 33903080 - Rars protein_coding retained_intron MGP_C3HHeJ_T0028300.1 MGP_C3HHeJ_G0017912.1 mouse_genomes_project 11 33904441 33912430 - Rars protein_coding processed_transcript MGP_C3HHeJ_T0003079.1 MGP_C3HHeJ_G0002861.1 mouse_genomes_project 11 41963715 41965210 - Gm12150 antisense antisense MGP_C3HHeJ_T0031132.1 MGP_C3HHeJ_G0018634.1 mouse_genomes_project 11 85874337 85924855 - MGP_C3HHeJ_P0031132 Appbp2 protein_coding protein_coding MGP_C3HHeJ_T0003055.1 MGP_C3HHeJ_G0002842.1 mouse_genomes_project 11 9556863 9579574 + Gm12002 antisense antisense MGP_C3HHeJ_T0003056.1 MGP_C3HHeJ_G0002842.1 mouse_genomes_project 11 9556882 9578271 + Gm12002 antisense antisense MGP_C3HHeJ_T0003057.1 MGP_C3HHeJ_G0002842.1 mouse_genomes_project 11 9564588 9593246 + Gm12002 antisense antisense MGP_C3HHeJ_T0028917.1 MGP_C3HHeJ_G0018074.1 mouse_genomes_project 11 54104235 54162058 - MGP_C3HHeJ_P0028917 Anxa6 protein_coding protein_coding MGP_C3HHeJ_T0028918.1 MGP_C3HHeJ_G0018074.1 mouse_genomes_project 11 54104235 54162058 - MGP_C3HHeJ_P0028918 Anxa6 protein_coding protein_coding MGP_C3HHeJ_T0028919.1 MGP_C3HHeJ_G0018074.1 mouse_genomes_project 11 54116303 54162028 - Anxa6 protein_coding processed_transcript MGP_C3HHeJ_T0027749.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3582815 3640475 + MGP_C3HHeJ_P0027749 Ccm2 protein_coding protein_coding MGP_C3HHeJ_T0027750.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3582838 3633441 + MGP_C3HHeJ_P0027750 Ccm2 protein_coding protein_coding MGP_C3HHeJ_T0027751.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3603489 3640465 + MGP_C3HHeJ_P0027751 Ccm2 protein_coding protein_coding MGP_C3HHeJ_T0027752.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3604431 3637094 + MGP_C3HHeJ_P0027752 Ccm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027753.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3604440 3606272 + Ccm2 protein_coding processed_transcript MGP_C3HHeJ_T0027754.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3604453 3637031 + MGP_C3HHeJ_P0027754 Ccm2 protein_coding protein_coding MGP_C3HHeJ_T0027755.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3604549 3640473 + MGP_C3HHeJ_P0027755 Ccm2 protein_coding protein_coding MGP_C3HHeJ_T0027756.1 MGP_C3HHeJ_G0017780.1 mouse_genomes_project 11 3637008 3638229 + Ccm2 protein_coding retained_intron MGP_C3HHeJ_T0031996.1 MGP_C3HHeJ_G0018852.1 mouse_genomes_project 11 101108527 101109259 - MGP_C3HHeJ_P0031996 Krtap3-2 protein_coding protein_coding MGP_C3HHeJ_T0029009.1 MGP_C3HHeJ_G0018107.1 mouse_genomes_project 11 57734447 57735513 - MGP_C3HHeJ_P0029009 Olfr30 protein_coding protein_coding MGP_C3HHeJ_T0030942.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288083 83309809 + MGP_C3HHeJ_P0030942 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030943.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288110 83311220 + MGP_C3HHeJ_P0030943 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030944.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288117 83303517 + Lig3 protein_coding retained_intron MGP_C3HHeJ_T0030945.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288160 83307600 + MGP_C3HHeJ_P0030945 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030946.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288168 83308972 + MGP_C3HHeJ_P0030946 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030947.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288168 83308973 + MGP_C3HHeJ_P0030947 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030948.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288173 83297280 + MGP_C3HHeJ_P0030948 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030949.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288173 83297281 + MGP_C3HHeJ_P0030949 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030950.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83288178 83311144 + MGP_C3HHeJ_P0030950 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0030951.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83302660 83306497 + Lig3 protein_coding retained_intron MGP_C3HHeJ_T0030952.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83304164 83306514 + Lig3 protein_coding retained_intron MGP_C3HHeJ_T0030953.1 MGP_C3HHeJ_G0018584.1 mouse_genomes_project 11 83305295 83311220 + MGP_C3HHeJ_P0030953 Lig3 protein_coding protein_coding MGP_C3HHeJ_T0028238.1 MGP_C3HHeJ_G0017892.1 mouse_genomes_project 11 30471797 30571313 + MGP_C3HHeJ_P0028238 Stk10 protein_coding protein_coding MGP_C3HHeJ_T0028239.1 MGP_C3HHeJ_G0017892.1 mouse_genomes_project 11 30531207 30543127 + Stk10 protein_coding retained_intron MGP_C3HHeJ_T0098345.1 MGP_C3HHeJ_G0036556.1 mouse_genomes_project 11 54629523 54629647 + Gm12238 sense_intronic sense_intronic MGP_C3HHeJ_T0012378.1 MGP_C3HHeJ_G0010482.1 mouse_genomes_project 11 12096257 12098468 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028472.1 MGP_C3HHeJ_G0017959.1 mouse_genomes_project 11 47363669 47380995 - MGP_C3HHeJ_P0028472 Trim41 protein_coding protein_coding MGP_C3HHeJ_T0028473.1 MGP_C3HHeJ_G0017959.1 mouse_genomes_project 11 47365651 47373834 - MGP_C3HHeJ_P0028473 Trim41 protein_coding protein_coding MGP_C3HHeJ_T0028474.1 MGP_C3HHeJ_G0017959.1 mouse_genomes_project 11 47366362 47380595 - MGP_C3HHeJ_P0028474 Trim41 protein_coding protein_coding MGP_C3HHeJ_T0028475.1 MGP_C3HHeJ_G0017959.1 mouse_genomes_project 11 47366464 47379862 - MGP_C3HHeJ_P0028475 Trim41 protein_coding protein_coding MGP_C3HHeJ_T0032828.1 MGP_C3HHeJ_G0019063.1 mouse_genomes_project 11 108837548 108849559 - MGP_C3HHeJ_P0032828 Polg2 protein_coding protein_coding MGP_C3HHeJ_T0032829.1 MGP_C3HHeJ_G0019063.1 mouse_genomes_project 11 108837548 108849581 - MGP_C3HHeJ_P0032829 Polg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032830.1 MGP_C3HHeJ_G0019063.1 mouse_genomes_project 11 108838028 108849517 - MGP_C3HHeJ_P0032830 Polg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032831.1 MGP_C3HHeJ_G0019063.1 mouse_genomes_project 11 108840339 108849517 - MGP_C3HHeJ_P0032831 Polg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032832.1 MGP_C3HHeJ_G0019063.1 mouse_genomes_project 11 108841937 108843146 - Polg2 protein_coding retained_intron MGP_C3HHeJ_T0032833.1 MGP_C3HHeJ_G0019063.1 mouse_genomes_project 11 108844810 108849546 - MGP_C3HHeJ_P0032833 Polg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033055.1 MGP_C3HHeJ_G0019110.1 mouse_genomes_project 11 117250714 117272999 + Kif19a protein_coding processed_transcript MGP_C3HHeJ_T0033056.1 MGP_C3HHeJ_G0019110.1 mouse_genomes_project 11 117250714 117272999 + Kif19a protein_coding processed_transcript MGP_C3HHeJ_T0033057.1 MGP_C3HHeJ_G0019110.1 mouse_genomes_project 11 117250714 117274733 + MGP_C3HHeJ_P0033057 Kif19a protein_coding protein_coding MGP_C3HHeJ_T0033058.1 MGP_C3HHeJ_G0019110.1 mouse_genomes_project 11 117250715 117277243 + MGP_C3HHeJ_P0033058 Kif19a protein_coding protein_coding MGP_C3HHeJ_T0033059.1 MGP_C3HHeJ_G0019110.1 mouse_genomes_project 11 117271478 117272387 + Kif19a protein_coding retained_intron MGP_C3HHeJ_T0033060.1 MGP_C3HHeJ_G0019110.1 mouse_genomes_project 11 117274726 117277408 + MGP_C3HHeJ_P0033060 Kif19a protein_coding protein_coding MGP_C3HHeJ_T0032024.1 MGP_C3HHeJ_G0018880.1 mouse_genomes_project 11 101544304 101545225 + MGP_C3HHeJ_P0032024 Gm11565 protein_coding protein_coding MGP_C3HHeJ_T0033816.1 MGP_C3HHeJ_G0019262.1 mouse_genomes_project 11 123438963 123448416 + MGP_C3HHeJ_P0033816 Anapc11 protein_coding protein_coding MGP_C3HHeJ_T0033817.1 MGP_C3HHeJ_G0019262.1 mouse_genomes_project 11 123438982 123441231 + Anapc11 protein_coding retained_intron MGP_C3HHeJ_T0033818.1 MGP_C3HHeJ_G0019262.1 mouse_genomes_project 11 123439074 123445994 + MGP_C3HHeJ_P0033818 Anapc11 protein_coding protein_coding MGP_C3HHeJ_T0033819.1 MGP_C3HHeJ_G0019262.1 mouse_genomes_project 11 123444161 123445710 + Anapc11 protein_coding processed_transcript MGP_C3HHeJ_T0027451.1 MGP_C3HHeJ_G0017712.1 mouse_genomes_project 11 358711 364594 + MGP_C3HHeJ_P0027451 Pla2g3 protein_coding protein_coding MGP_C3HHeJ_T0027452.1 MGP_C3HHeJ_G0017712.1 mouse_genomes_project 11 358726 369771 + MGP_C3HHeJ_P0027452 Pla2g3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027453.1 MGP_C3HHeJ_G0017712.1 mouse_genomes_project 11 359417 364591 + Pla2g3 protein_coding retained_intron MGP_C3HHeJ_T0003218.1 MGP_C3HHeJ_G0002975.1 mouse_genomes_project 11 100308288 100324116 - Gm12359 antisense antisense MGP_C3HHeJ_T0003219.1 MGP_C3HHeJ_G0002975.1 mouse_genomes_project 11 100308889 100324116 - Gm12359 antisense antisense MGP_C3HHeJ_T0003220.1 MGP_C3HHeJ_G0002975.1 mouse_genomes_project 11 100315240 100324087 - Gm12359 antisense antisense MGP_C3HHeJ_T0009601.1 MGP_C3HHeJ_G0007734.1 mouse_genomes_project 11 59591608 59591674 - Mir6922 miRNA miRNA MGP_C3HHeJ_T0029035.1 MGP_C3HHeJ_G0018126.1 mouse_genomes_project 11 58076415 58080475 + MGP_C3HHeJ_P0029035 Olfr314 protein_coding protein_coding MGP_C3HHeJ_T0029036.1 MGP_C3HHeJ_G0018126.1 mouse_genomes_project 11 58079593 58080724 + MGP_C3HHeJ_P0029036 Olfr314 protein_coding protein_coding MGP_C3HHeJ_T0003253.1 MGP_C3HHeJ_G0003004.1 mouse_genomes_project 11 109109685 109112006 + antisense antisense MGP_C3HHeJ_T0003254.1 MGP_C3HHeJ_G0003004.1 mouse_genomes_project 11 109109790 109112011 + antisense antisense MGP_C3HHeJ_T0012494.1 MGP_C3HHeJ_G0010598.1 mouse_genomes_project 11 54609659 54609829 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0016982.1 MGP_C3HHeJ_G0014940.1 mouse_genomes_project 11 67670170 67697156 + 9130017K11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016983.1 MGP_C3HHeJ_G0014940.1 mouse_genomes_project 11 67671042 67672459 + 9130017K11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0099997.1 MGP_C3HHeJ_G0038191.1 mouse_genomes_project 11 18706201 18706340 - Gm23582 snoRNA snoRNA MGP_C3HHeJ_T0031961.1 MGP_C3HHeJ_G0018836.1 mouse_genomes_project 11 100569420 100584276 + MGP_C3HHeJ_P0031961 Igfbp4 protein_coding protein_coding MGP_C3HHeJ_T0031962.1 MGP_C3HHeJ_G0018836.1 mouse_genomes_project 11 100569936 100580647 + MGP_C3HHeJ_P0031962 Igfbp4 protein_coding protein_coding MGP_C3HHeJ_T0031963.1 MGP_C3HHeJ_G0018836.1 mouse_genomes_project 11 100570362 100577306 + Igfbp4 protein_coding processed_transcript MGP_C3HHeJ_T0031964.1 MGP_C3HHeJ_G0018836.1 mouse_genomes_project 11 100572529 100580866 + Igfbp4 protein_coding processed_transcript MGP_C3HHeJ_T0031965.1 MGP_C3HHeJ_G0018836.1 mouse_genomes_project 11 100573698 100580761 + Igfbp4 protein_coding processed_transcript MGP_C3HHeJ_T0031966.1 MGP_C3HHeJ_G0018836.1 mouse_genomes_project 11 100576241 100580758 + MGP_C3HHeJ_P0031966 Igfbp4 protein_coding protein_coding MGP_C3HHeJ_T0101636.1 MGP_C3HHeJ_G0039602.1 mouse_genomes_project 11 57846449 57846841 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0030527.1 MGP_C3HHeJ_G0018484.1 mouse_genomes_project 11 76423730 76424791 + MGP_C3HHeJ_P0030527 Dbil5 protein_coding protein_coding MGP_C3HHeJ_T0029506.1 MGP_C3HHeJ_G0018237.1 mouse_genomes_project 11 66758694 66771352 + MGP_C3HHeJ_P0029506 Sco1 protein_coding protein_coding MGP_C3HHeJ_T0029507.1 MGP_C3HHeJ_G0018237.1 mouse_genomes_project 11 66758694 66771584 + MGP_C3HHeJ_P0029507 Sco1 protein_coding protein_coding MGP_C3HHeJ_T0029508.1 MGP_C3HHeJ_G0018237.1 mouse_genomes_project 11 66759795 66770097 + Sco1 protein_coding processed_transcript MGP_C3HHeJ_T0029509.1 MGP_C3HHeJ_G0018237.1 mouse_genomes_project 11 66764347 66773082 + Sco1 protein_coding processed_transcript MGP_C3HHeJ_T0100002.1 MGP_C3HHeJ_G0038196.1 mouse_genomes_project 11 24727345 24730024 - Gm24850 snoRNA snoRNA MGP_C3HHeJ_T0011199.1 MGP_C3HHeJ_G0009332.1 mouse_genomes_project 11 524369 524457 - Gm27937 misc_RNA misc_RNA MGP_C3HHeJ_T0030757.1 MGP_C3HHeJ_G0018529.1 mouse_genomes_project 11 78637078 78652861 + MGP_C3HHeJ_P0030757 Pigs protein_coding unknown_likely_coding MGP_C3HHeJ_T0031196.1 MGP_C3HHeJ_G0018647.1 mouse_genomes_project 11 87425110 87433662 + MGP_C3HHeJ_P0031196 Ptrh2 protein_coding protein_coding MGP_C3HHeJ_T0031197.1 MGP_C3HHeJ_G0018647.1 mouse_genomes_project 11 87425110 87433662 + MGP_C3HHeJ_P0031197 Ptrh2 protein_coding protein_coding MGP_C3HHeJ_T0032640.1 MGP_C3HHeJ_G0019020.1 mouse_genomes_project 11 105711510 105755841 + MGP_C3HHeJ_P0032640 Wnt3 protein_coding protein_coding MGP_C3HHeJ_T0028163.1 MGP_C3HHeJ_G0017874.1 mouse_genomes_project 11 28794454 28819372 - MGP_C3HHeJ_P0028163 Erlec1 protein_coding protein_coding MGP_C3HHeJ_T0028164.1 MGP_C3HHeJ_G0017874.1 mouse_genomes_project 11 28795431 28813695 - MGP_C3HHeJ_P0028164 Erlec1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028165.1 MGP_C3HHeJ_G0017874.1 mouse_genomes_project 11 28799244 28813311 - MGP_C3HHeJ_P0028165 Erlec1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028166.1 MGP_C3HHeJ_G0017874.1 mouse_genomes_project 11 28807907 28813428 - Erlec1 protein_coding retained_intron MGP_C3HHeJ_T0028167.1 MGP_C3HHeJ_G0017874.1 mouse_genomes_project 11 28818232 28820472 - Erlec1 protein_coding processed_transcript MGP_C3HHeJ_T0033488.1 MGP_C3HHeJ_G0019193.1 mouse_genomes_project 11 119561210 119632242 + MGP_C3HHeJ_P0033488 Mgat5b protein_coding protein_coding MGP_C3HHeJ_T0033489.1 MGP_C3HHeJ_G0019193.1 mouse_genomes_project 11 119592647 119619607 + Mgat5b protein_coding processed_transcript MGP_C3HHeJ_T0033490.1 MGP_C3HHeJ_G0019193.1 mouse_genomes_project 11 119612085 119623689 + MGP_C3HHeJ_P0033490 Mgat5b protein_coding protein_coding MGP_C3HHeJ_T0033491.1 MGP_C3HHeJ_G0019193.1 mouse_genomes_project 11 119618372 119632234 + Mgat5b protein_coding retained_intron MGP_C3HHeJ_T0003094.1 MGP_C3HHeJ_G0002875.1 mouse_genomes_project 11 52112913 52121264 - Gm11186 antisense antisense MGP_C3HHeJ_T0000816.1 MGP_C3HHeJ_G0000757.1 mouse_genomes_project 11 43051309 43058007 - TEC TEC MGP_C3HHeJ_T0032641.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105759665 105897371 - MGP_C3HHeJ_P0032641 Nsf protein_coding protein_coding MGP_C3HHeJ_T0032642.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105760808 105765315 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032643.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105760817 105761984 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032644.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105787520 105812065 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032645.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105801319 105812187 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032646.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105821262 105897339 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032647.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105850165 105897339 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032648.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105851192 105881489 - MGP_C3HHeJ_P0032648 Nsf protein_coding protein_coding MGP_C3HHeJ_T0032649.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105851296 105866902 - Nsf protein_coding retained_intron MGP_C3HHeJ_T0032650.1 MGP_C3HHeJ_G0019021.1 mouse_genomes_project 11 105866898 105881489 - MGP_C3HHeJ_P0032650 Nsf protein_coding protein_coding MGP_C3HHeJ_T0011203.1 MGP_C3HHeJ_G0009336.1 mouse_genomes_project 11 41253855 41254167 + Gm25543 misc_RNA misc_RNA MGP_C3HHeJ_T0097990.1 MGP_C3HHeJ_G0036202.1 mouse_genomes_project 11 24725454 24725536 + n-R5s68 rRNA rRNA MGP_C3HHeJ_T0000820.1 MGP_C3HHeJ_G0000761.1 mouse_genomes_project 11 97327871 97328696 - TEC TEC MGP_C3HHeJ_T0017042.1 MGP_C3HHeJ_G0014977.1 mouse_genomes_project 11 109943154 109945272 + Gm11650 processed_transcript processed_transcript MGP_C3HHeJ_T0009610.1 MGP_C3HHeJ_G0007743.1 mouse_genomes_project 11 69345615 69345693 - Gm27493 miRNA miRNA MGP_C3HHeJ_T0031855.1 MGP_C3HHeJ_G0018811.1 mouse_genomes_project 11 99859059 99860202 + MGP_C3HHeJ_P0031855 Tcap protein_coding protein_coding MGP_C3HHeJ_T0032655.1 MGP_C3HHeJ_G0019023.1 mouse_genomes_project 11 106084789 106127376 + MGP_C3HHeJ_P0032655 Crhr1 protein_coding protein_coding MGP_C3HHeJ_T0012363.1 MGP_C3HHeJ_G0010467.1 mouse_genomes_project 11 3829112 3830616 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012554.1 MGP_C3HHeJ_G0010658.1 mouse_genomes_project 11 77343842 77344146 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029237.1 MGP_C3HHeJ_G0018181.1 mouse_genomes_project 11 60348196 60362791 - MGP_C3HHeJ_P0029237 Tmem11 protein_coding protein_coding MGP_C3HHeJ_T0029238.1 MGP_C3HHeJ_G0018181.1 mouse_genomes_project 11 60348196 60363025 - MGP_C3HHeJ_P0029238 Tmem11 protein_coding protein_coding MGP_C3HHeJ_T0029239.1 MGP_C3HHeJ_G0018181.1 mouse_genomes_project 11 60348730 60362540 - MGP_C3HHeJ_P0029239 Tmem11 protein_coding protein_coding MGP_C3HHeJ_T0031037.1 MGP_C3HHeJ_G0018615.1 mouse_genomes_project 11 84367358 84400915 + MGP_C3HHeJ_P0031037 Heatr6 protein_coding protein_coding MGP_C3HHeJ_T0031038.1 MGP_C3HHeJ_G0018615.1 mouse_genomes_project 11 84367376 84399181 + Heatr6 protein_coding processed_transcript MGP_C3HHeJ_T0031039.1 MGP_C3HHeJ_G0018615.1 mouse_genomes_project 11 84367691 84369541 + Heatr6 protein_coding processed_transcript MGP_C3HHeJ_T0031040.1 MGP_C3HHeJ_G0018615.1 mouse_genomes_project 11 84374411 84379005 + Heatr6 protein_coding retained_intron MGP_C3HHeJ_T0031041.1 MGP_C3HHeJ_G0018615.1 mouse_genomes_project 11 84389364 84396077 + Heatr6 protein_coding processed_transcript MGP_C3HHeJ_T0003159.1 MGP_C3HHeJ_G0002928.1 mouse_genomes_project 11 75167845 75170718 - Gm12333 antisense antisense MGP_C3HHeJ_T0003210.1 MGP_C3HHeJ_G0002967.1 mouse_genomes_project 11 98129492 98130960 + Gm11537 antisense antisense MGP_C3HHeJ_T0030344.1 MGP_C3HHeJ_G0018441.1 mouse_genomes_project 11 74345240 74347283 - MGP_C3HHeJ_P0030344 protein_coding protein_coding MGP_C3HHeJ_T0028658.1 MGP_C3HHeJ_G0018011.1 mouse_genomes_project 11 49774280 49775228 + MGP_C3HHeJ_P0028658 Olfr1378 protein_coding protein_coding MGP_C3HHeJ_T0009591.1 MGP_C3HHeJ_G0007724.1 mouse_genomes_project 11 49150384 49150479 - Mir804 miRNA miRNA MGP_C3HHeJ_T0006173.1 MGP_C3HHeJ_G0005150.1 mouse_genomes_project 11 61401702 61404404 - A530017D24Rik lincRNA lincRNA MGP_C3HHeJ_T0006174.1 MGP_C3HHeJ_G0005150.1 mouse_genomes_project 11 61402337 61405193 - A530017D24Rik lincRNA lincRNA MGP_C3HHeJ_T0030230.1 MGP_C3HHeJ_G0018396.1 mouse_genomes_project 11 72617301 72699010 + MGP_C3HHeJ_P0030230 Ube2g1 protein_coding protein_coding MGP_C3HHeJ_T0030231.1 MGP_C3HHeJ_G0018396.1 mouse_genomes_project 11 72617301 72699010 + MGP_C3HHeJ_P0030231 Ube2g1 protein_coding protein_coding MGP_C3HHeJ_T0030232.1 MGP_C3HHeJ_G0018396.1 mouse_genomes_project 11 72617337 72692669 + Ube2g1 protein_coding retained_intron MGP_C3HHeJ_T0030270.1 MGP_C3HHeJ_G0018406.1 mouse_genomes_project 11 73190104 73202367 + MGP_C3HHeJ_P0030270 P2rx5 protein_coding protein_coding MGP_C3HHeJ_T0030271.1 MGP_C3HHeJ_G0018406.1 mouse_genomes_project 11 73190268 73200180 + MGP_C3HHeJ_P0030271 P2rx5 protein_coding protein_coding MGP_C3HHeJ_T0030272.1 MGP_C3HHeJ_G0018406.1 mouse_genomes_project 11 73190268 73200180 + MGP_C3HHeJ_P0030272 P2rx5 protein_coding protein_coding MGP_C3HHeJ_T0030360.1 MGP_C3HHeJ_G0018449.1 mouse_genomes_project 11 74764251 74771321 + Cluh protein_coding processed_transcript MGP_C3HHeJ_T0030361.1 MGP_C3HHeJ_G0018449.1 mouse_genomes_project 11 74764271 74784664 + MGP_C3HHeJ_P0030361 Cluh protein_coding protein_coding MGP_C3HHeJ_T0030362.1 MGP_C3HHeJ_G0018449.1 mouse_genomes_project 11 74764271 74785606 + MGP_C3HHeJ_P0030362 Cluh protein_coding protein_coding MGP_C3HHeJ_T0030363.1 MGP_C3HHeJ_G0018449.1 mouse_genomes_project 11 74764296 74785606 + Cluh protein_coding retained_intron MGP_C3HHeJ_T0030364.1 MGP_C3HHeJ_G0018449.1 mouse_genomes_project 11 74764586 74772109 + Cluh protein_coding processed_transcript MGP_C3HHeJ_T0030365.1 MGP_C3HHeJ_G0018449.1 mouse_genomes_project 11 74779234 74780061 + Cluh protein_coding retained_intron MGP_C3HHeJ_T0012574.1 MGP_C3HHeJ_G0010678.1 mouse_genomes_project 11 83249058 83249460 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029142.1 MGP_C3HHeJ_G0018162.1 mouse_genomes_project 11 59328350 59340840 + MGP_C3HHeJ_P0029142 Med9 protein_coding protein_coding MGP_C3HHeJ_T0006300.1 MGP_C3HHeJ_G0005242.1 mouse_genomes_project 11 121873547 121879165 - Gm11754 lincRNA lincRNA MGP_C3HHeJ_T0030304.1 MGP_C3HHeJ_G0018416.1 mouse_genomes_project 11 73411084 73415572 + MGP_C3HHeJ_P0030304 Olfr376 protein_coding protein_coding MGP_C3HHeJ_T0030305.1 MGP_C3HHeJ_G0018416.1 mouse_genomes_project 11 73411084 73415572 + MGP_C3HHeJ_P0030305 Olfr376 protein_coding protein_coding MGP_C3HHeJ_T0029987.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343385 70346748 + Arrb2 protein_coding retained_intron MGP_C3HHeJ_T0029988.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343387 70351426 + MGP_C3HHeJ_P0029988 Arrb2 protein_coding protein_coding MGP_C3HHeJ_T0029989.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343387 70351426 + MGP_C3HHeJ_P0029989 Arrb2 protein_coding protein_coding MGP_C3HHeJ_T0029990.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343395 70351580 + MGP_C3HHeJ_P0029990 Arrb2 protein_coding protein_coding MGP_C3HHeJ_T0029991.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343427 70348357 + MGP_C3HHeJ_P0029991 Arrb2 protein_coding protein_coding MGP_C3HHeJ_T0029992.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343432 70349499 + MGP_C3HHeJ_P0029992 Arrb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029993.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70343481 70351555 + MGP_C3HHeJ_P0029993 Arrb2 protein_coding protein_coding MGP_C3HHeJ_T0029994.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70347450 70350985 + Arrb2 protein_coding retained_intron MGP_C3HHeJ_T0029995.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70347654 70349474 + Arrb2 protein_coding retained_intron MGP_C3HHeJ_T0029996.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70348043 70350305 + Arrb2 protein_coding retained_intron MGP_C3HHeJ_T0029997.1 MGP_C3HHeJ_G0018347.1 mouse_genomes_project 11 70349333 70350980 + Arrb2 protein_coding retained_intron MGP_C3HHeJ_T0012426.1 MGP_C3HHeJ_G0010530.1 mouse_genomes_project 11 26744541 26745384 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030743.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78609969 78631062 + MGP_C3HHeJ_P0030743 Spag5 protein_coding protein_coding MGP_C3HHeJ_T0030744.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78610064 78623890 + Spag5 protein_coding retained_intron MGP_C3HHeJ_T0030745.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78610095 78623563 + Spag5 protein_coding retained_intron MGP_C3HHeJ_T0030746.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78621814 78622784 + Spag5 protein_coding retained_intron MGP_C3HHeJ_T0030747.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78624056 78624649 + Spag5 protein_coding retained_intron MGP_C3HHeJ_T0030748.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78624507 78628506 + Spag5 protein_coding retained_intron MGP_C3HHeJ_T0030749.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78626569 78628983 + Spag5 protein_coding processed_transcript MGP_C3HHeJ_T0030750.1 MGP_C3HHeJ_G0018527.1 mouse_genomes_project 11 78628533 78629348 + Spag5 protein_coding retained_intron MGP_C3HHeJ_T0009623.1 MGP_C3HHeJ_G0007756.1 mouse_genomes_project 11 72658177 72658250 + Gm25678 miRNA miRNA MGP_C3HHeJ_T0030852.1 MGP_C3HHeJ_G0018557.1 mouse_genomes_project 11 80402626 80448669 + MGP_C3HHeJ_P0030852 Suz12 protein_coding protein_coding MGP_C3HHeJ_T0030853.1 MGP_C3HHeJ_G0018557.1 mouse_genomes_project 11 80402626 80448670 + MGP_C3HHeJ_P0030853 Suz12 protein_coding protein_coding MGP_C3HHeJ_T0030854.1 MGP_C3HHeJ_G0018557.1 mouse_genomes_project 11 80405106 80411476 + Suz12 protein_coding retained_intron MGP_C3HHeJ_T0030855.1 MGP_C3HHeJ_G0018557.1 mouse_genomes_project 11 80405137 80427466 + Suz12 protein_coding retained_intron MGP_C3HHeJ_T0030856.1 MGP_C3HHeJ_G0018557.1 mouse_genomes_project 11 80405311 80427396 + MGP_C3HHeJ_P0030856 Suz12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030857.1 MGP_C3HHeJ_G0018557.1 mouse_genomes_project 11 80439754 80446548 + MGP_C3HHeJ_P0030857 Suz12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030353.1 MGP_C3HHeJ_G0018446.1 mouse_genomes_project 11 74459281 74460276 + MGP_C3HHeJ_P0030353 Olfr412 protein_coding protein_coding MGP_C3HHeJ_T0012465.1 MGP_C3HHeJ_G0010569.1 mouse_genomes_project 11 44263462 44263851 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031502.1 MGP_C3HHeJ_G0018721.1 mouse_genomes_project 11 95866918 95880686 - MGP_C3HHeJ_P0031502 Xylt2 protein_coding protein_coding MGP_C3HHeJ_T0031503.1 MGP_C3HHeJ_G0018721.1 mouse_genomes_project 11 95867654 95880686 - MGP_C3HHeJ_P0031503 Xylt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031504.1 MGP_C3HHeJ_G0018721.1 mouse_genomes_project 11 95869273 95871241 - MGP_C3HHeJ_P0031504 Xylt2 protein_coding protein_coding MGP_C3HHeJ_T0031505.1 MGP_C3HHeJ_G0018721.1 mouse_genomes_project 11 95869918 95870851 - Xylt2 protein_coding retained_intron MGP_C3HHeJ_T0031506.1 MGP_C3HHeJ_G0018721.1 mouse_genomes_project 11 95871573 95880578 - MGP_C3HHeJ_P0031506 Xylt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0031507.1 MGP_C3HHeJ_G0018721.1 mouse_genomes_project 11 95879131 95880584 - Xylt2 protein_coding processed_transcript MGP_C3HHeJ_T0012398.1 MGP_C3HHeJ_G0010502.1 mouse_genomes_project 11 17878965 17879364 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027656.1 MGP_C3HHeJ_G0017757.1 mouse_genomes_project 11 2542461 2666278 + MGP_C3HHeJ_P0027656 Ankrd36 protein_coding protein_coding MGP_C3HHeJ_T0027657.1 MGP_C3HHeJ_G0017757.1 mouse_genomes_project 11 2542474 2557061 + MGP_C3HHeJ_P0027657 Ankrd36 protein_coding protein_coding MGP_C3HHeJ_T0027658.1 MGP_C3HHeJ_G0017757.1 mouse_genomes_project 11 2542594 2633590 + MGP_C3HHeJ_P0027658 Ankrd36 protein_coding protein_coding MGP_C3HHeJ_T0027659.1 MGP_C3HHeJ_G0017757.1 mouse_genomes_project 11 2546860 2556911 + Ankrd36 protein_coding processed_transcript MGP_C3HHeJ_T0027660.1 MGP_C3HHeJ_G0017757.1 mouse_genomes_project 11 2604233 2622980 + MGP_C3HHeJ_P0027660 Ankrd36 protein_coding protein_coding MGP_C3HHeJ_T0031631.1 MGP_C3HHeJ_G0018762.1 mouse_genomes_project 11 97665331 97689839 + MGP_C3HHeJ_P0031631 Hoxb3 protein_coding protein_coding MGP_C3HHeJ_T0031632.1 MGP_C3HHeJ_G0018762.1 mouse_genomes_project 11 97670074 97686218 + MGP_C3HHeJ_P0031632 Hoxb3 protein_coding protein_coding MGP_C3HHeJ_T0031633.1 MGP_C3HHeJ_G0018762.1 mouse_genomes_project 11 97682859 97683689 + Hoxb3 protein_coding processed_transcript MGP_C3HHeJ_T0031634.1 MGP_C3HHeJ_G0018762.1 mouse_genomes_project 11 97685683 97688416 + MGP_C3HHeJ_P0031634 Hoxb3 protein_coding protein_coding MGP_C3HHeJ_T0033884.1 MGP_C3HHeJ_G0019271.1 mouse_genomes_project 11 123562319 123563361 - protein_coding processed_transcript MGP_C3HHeJ_T0033885.1 MGP_C3HHeJ_G0019271.1 mouse_genomes_project 11 123562319 123565109 - MGP_C3HHeJ_P0033885 protein_coding protein_coding MGP_C3HHeJ_T0033886.1 MGP_C3HHeJ_G0019271.1 mouse_genomes_project 11 123562319 123565109 - MGP_C3HHeJ_P0033886 protein_coding protein_coding MGP_C3HHeJ_T0033887.1 MGP_C3HHeJ_G0019271.1 mouse_genomes_project 11 123562319 123565115 - MGP_C3HHeJ_P0033887 protein_coding protein_coding MGP_C3HHeJ_T0033888.1 MGP_C3HHeJ_G0019271.1 mouse_genomes_project 11 123562320 123565115 - MGP_C3HHeJ_P0033888 protein_coding protein_coding MGP_C3HHeJ_T0028254.1 MGP_C3HHeJ_G0017897.1 mouse_genomes_project 11 31177874 31180720 - MGP_C3HHeJ_P0028254 Tlx3 protein_coding protein_coding MGP_C3HHeJ_T0029962.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70135898 70138506 - MGP_C3HHeJ_P0029962 0610010K14Rik protein_coding protein_coding MGP_C3HHeJ_T0029964.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70135906 70138606 - MGP_C3HHeJ_P0029964 0610010K14Rik protein_coding protein_coding MGP_C3HHeJ_T0029965.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70135906 70138555 - MGP_C3HHeJ_P0029965 0610010K14Rik protein_coding protein_coding MGP_C3HHeJ_T0029966.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70135906 70138616 - MGP_C3HHeJ_P0029966 0610010K14Rik protein_coding protein_coding MGP_C3HHeJ_T0029967.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70135906 70136897 - MGP_C3HHeJ_P0029967 0610010K14Rik protein_coding protein_coding MGP_C3HHeJ_T0029969.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70136062 70138380 - MGP_C3HHeJ_P0029969 0610010K14Rik protein_coding protein_coding MGP_C3HHeJ_T0029970.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70136071 70138191 - 0610010K14Rik protein_coding processed_transcript MGP_C3HHeJ_T0029971.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70136079 70138465 - 0610010K14Rik protein_coding processed_transcript MGP_C3HHeJ_T0029972.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70136436 70138563 - MGP_C3HHeJ_P0029972 0610010K14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029973.1 MGP_C3HHeJ_G0018340.1 mouse_genomes_project 11 70137155 70138614 - 0610010K14Rik protein_coding retained_intron MGP_C3HHeJ_T0032217.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102921059 102960709 - MGP_C3HHeJ_P0032217 Ezh1 protein_coding protein_coding MGP_C3HHeJ_T0032218.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102921060 102960696 - MGP_C3HHeJ_P0032218 Ezh1 protein_coding protein_coding MGP_C3HHeJ_T0032219.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102923219 102924367 - Ezh1 protein_coding processed_transcript MGP_C3HHeJ_T0032220.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102923674 102933054 - Ezh1 protein_coding processed_transcript MGP_C3HHeJ_T0032221.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102928576 102930882 - Ezh1 protein_coding processed_transcript MGP_C3HHeJ_T0032222.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102929116 102960679 - MGP_C3HHeJ_P0032222 Ezh1 protein_coding protein_coding MGP_C3HHeJ_T0032223.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102929241 102940076 - Ezh1 protein_coding processed_transcript MGP_C3HHeJ_T0032224.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102937406 102938903 - Ezh1 protein_coding processed_transcript MGP_C3HHeJ_T0032225.1 MGP_C3HHeJ_G0018938.1 mouse_genomes_project 11 102947951 102960688 - Ezh1 protein_coding processed_transcript MGP_C3HHeJ_T0027672.1 MGP_C3HHeJ_G0017762.1 mouse_genomes_project 11 2816511 2826318 - MGP_C3HHeJ_P0027672 Polm protein_coding protein_coding MGP_C3HHeJ_T0027673.1 MGP_C3HHeJ_G0017762.1 mouse_genomes_project 11 2816512 2826545 - MGP_C3HHeJ_P0027673 Polm protein_coding protein_coding MGP_C3HHeJ_T0027674.1 MGP_C3HHeJ_G0017762.1 mouse_genomes_project 11 2817866 2818852 - Polm protein_coding processed_transcript MGP_C3HHeJ_T0027675.1 MGP_C3HHeJ_G0017762.1 mouse_genomes_project 11 2823331 2825014 - Polm protein_coding processed_transcript MGP_C3HHeJ_T0027676.1 MGP_C3HHeJ_G0017762.1 mouse_genomes_project 11 2824806 2826281 - Polm protein_coding processed_transcript MGP_C3HHeJ_T0027677.1 MGP_C3HHeJ_G0017762.1 mouse_genomes_project 11 2824829 2826322 - Polm protein_coding processed_transcript MGP_C3HHeJ_T0101662.1 MGP_C3HHeJ_G0039628.1 mouse_genomes_project 11 101596807 101597224 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003054.1 MGP_C3HHeJ_G0002841.1 mouse_genomes_project 11 9118747 9136908 + 1700042O10Rik antisense antisense MGP_C3HHeJ_T0098802.1 MGP_C3HHeJ_G0036996.1 mouse_genomes_project 11 88067534 88067640 - Gm22883 snRNA snRNA MGP_C3HHeJ_T0029021.1 MGP_C3HHeJ_G0018116.1 mouse_genomes_project 11 57880985 57888768 - MGP_C3HHeJ_P0029021 2210407C18Rik protein_coding protein_coding MGP_C3HHeJ_T0029022.1 MGP_C3HHeJ_G0018116.1 mouse_genomes_project 11 57880990 57886204 - MGP_C3HHeJ_P0029022 2210407C18Rik protein_coding protein_coding MGP_C3HHeJ_T0029023.1 MGP_C3HHeJ_G0018116.1 mouse_genomes_project 11 57885009 57886197 - 2210407C18Rik protein_coding processed_transcript MGP_C3HHeJ_T0028449.1 MGP_C3HHeJ_G0017951.1 mouse_genomes_project 11 44991131 45005088 + MGP_C3HHeJ_P0028449 Gm12169 protein_coding protein_coding MGP_C3HHeJ_T0003191.1 MGP_C3HHeJ_G0002954.1 mouse_genomes_project 11 89813730 89839335 + Scpep1os antisense antisense MGP_C3HHeJ_T0031971.1 MGP_C3HHeJ_G0018838.1 mouse_genomes_project 11 100677652 100689266 - MGP_C3HHeJ_P0031971 Ccr7 protein_coding protein_coding MGP_C3HHeJ_T0030502.1 MGP_C3HHeJ_G0018479.1 mouse_genomes_project 11 76204429 76213022 - MGP_C3HHeJ_P0030502 Fam101b protein_coding protein_coding MGP_C3HHeJ_T0003052.1 MGP_C3HHeJ_G0002839.1 mouse_genomes_project 11 8796831 8820081 + Gm11998 antisense antisense MGP_C3HHeJ_T0033070.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117346810 117365571 + MGP_C3HHeJ_P0033070 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0033071.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117347198 117371001 + MGP_C3HHeJ_P0033071 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0033072.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117347508 117371002 + MGP_C3HHeJ_P0033072 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0033073.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117347538 117366185 + MGP_C3HHeJ_P0033073 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0033074.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117347909 117372259 + MGP_C3HHeJ_P0033074 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0033075.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117347977 117365735 + MGP_C3HHeJ_P0033075 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0033076.1 MGP_C3HHeJ_G0019113.1 mouse_genomes_project 11 117366329 117372513 + MGP_C3HHeJ_P0033076 Gprc5c protein_coding protein_coding MGP_C3HHeJ_T0011224.1 MGP_C3HHeJ_G0009357.1 mouse_genomes_project 11 119790750 119791078 + Gm22667 misc_RNA misc_RNA MGP_C3HHeJ_T0033090.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117667111 117685140 - MGP_C3HHeJ_P0033090 Cd300lf protein_coding protein_coding MGP_C3HHeJ_T0033091.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117667111 117685140 - MGP_C3HHeJ_P0033091 Cd300lf protein_coding protein_coding MGP_C3HHeJ_T0033092.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117667111 117685140 - MGP_C3HHeJ_P0033092 Cd300lf protein_coding protein_coding MGP_C3HHeJ_T0033093.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117668007 117685029 - MGP_C3HHeJ_P0033093 Cd300lf protein_coding unknown_likely_coding MGP_C3HHeJ_T0033094.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117669875 117685139 - Cd300lf protein_coding processed_transcript MGP_C3HHeJ_T0033095.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117671278 117678086 - Cd300lf protein_coding processed_transcript MGP_C3HHeJ_T0033096.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117671362 117678033 - Cd300lf protein_coding processed_transcript MGP_C3HHeJ_T0033097.1 MGP_C3HHeJ_G0019121.1 mouse_genomes_project 11 117671374 117678027 - Cd300lf protein_coding processed_transcript MGP_C3HHeJ_T0031708.1 MGP_C3HHeJ_G0018779.1 mouse_genomes_project 11 98479473 98497645 - MGP_C3HHeJ_P0031708 Tbx21 protein_coding protein_coding MGP_C3HHeJ_T0000814.1 MGP_C3HHeJ_G0000755.1 mouse_genomes_project 11 16483225 16484081 - TEC TEC MGP_C3HHeJ_T0012578.1 MGP_C3HHeJ_G0010682.1 mouse_genomes_project 11 85796786 85797978 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031397.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058578 95122580 + MGP_C3HHeJ_P0031397 Mbtd1 protein_coding protein_coding MGP_C3HHeJ_T0031398.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058592 95095469 + MGP_C3HHeJ_P0031398 Mbtd1 protein_coding protein_coding MGP_C3HHeJ_T0031399.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058832 95095479 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031400.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058933 95081638 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031401.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058934 95083095 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031402.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058943 95120923 + MGP_C3HHeJ_P0031402 Mbtd1 protein_coding protein_coding MGP_C3HHeJ_T0031403.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95058945 95122580 + MGP_C3HHeJ_P0031403 Mbtd1 protein_coding protein_coding MGP_C3HHeJ_T0031404.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95059604 95104445 + MGP_C3HHeJ_P0031404 Mbtd1 protein_coding protein_coding MGP_C3HHeJ_T0031405.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95077927 95107628 + MGP_C3HHeJ_P0031405 Mbtd1 protein_coding protein_coding MGP_C3HHeJ_T0031406.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95082679 95086394 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031407.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95086388 95107628 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031408.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95091754 95107334 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031409.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95097055 95100302 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0031410.1 MGP_C3HHeJ_G0018700.1 mouse_genomes_project 11 95099523 95112798 + Mbtd1 protein_coding processed_transcript MGP_C3HHeJ_T0006250.1 MGP_C3HHeJ_G0005206.1 mouse_genomes_project 11 97592659 97605956 + Gm53 lincRNA lincRNA MGP_C3HHeJ_T0006251.1 MGP_C3HHeJ_G0005206.1 mouse_genomes_project 11 97593206 97606170 + Gm53 lincRNA lincRNA MGP_C3HHeJ_T0006252.1 MGP_C3HHeJ_G0005206.1 mouse_genomes_project 11 97594094 97603162 + Gm53 lincRNA lincRNA MGP_C3HHeJ_T0006253.1 MGP_C3HHeJ_G0005206.1 mouse_genomes_project 11 97603078 97606340 + Gm53 lincRNA lincRNA MGP_C3HHeJ_T0028421.1 MGP_C3HHeJ_G0017943.1 mouse_genomes_project 11 44510782 44606861 + MGP_C3HHeJ_P0028421 Adam19 protein_coding protein_coding MGP_C3HHeJ_T0028422.1 MGP_C3HHeJ_G0017943.1 mouse_genomes_project 11 44510848 44519809 + Adam19 protein_coding processed_transcript MGP_C3HHeJ_T0028423.1 MGP_C3HHeJ_G0017943.1 mouse_genomes_project 11 44586045 44603374 + Adam19 protein_coding processed_transcript MGP_C3HHeJ_T0028424.1 MGP_C3HHeJ_G0017943.1 mouse_genomes_project 11 44592735 44597173 + Adam19 protein_coding retained_intron MGP_C3HHeJ_T0030568.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77173799 77174829 + Blmh protein_coding retained_intron MGP_C3HHeJ_T0030569.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77173809 77196978 + Blmh protein_coding retained_intron MGP_C3HHeJ_T0030570.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77173891 77195995 + MGP_C3HHeJ_P0030570 Blmh protein_coding protein_coding MGP_C3HHeJ_T0030571.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77173921 77215948 + MGP_C3HHeJ_P0030571 Blmh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030572.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77173951 77216503 + MGP_C3HHeJ_P0030572 Blmh protein_coding protein_coding MGP_C3HHeJ_T0030573.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77174117 77182649 + MGP_C3HHeJ_P0030573 Blmh protein_coding protein_coding MGP_C3HHeJ_T0030574.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77174138 77180603 + MGP_C3HHeJ_P0030574 Blmh protein_coding protein_coding MGP_C3HHeJ_T0030575.1 MGP_C3HHeJ_G0018494.1 mouse_genomes_project 11 77189592 77195032 + Blmh protein_coding processed_transcript MGP_C3HHeJ_T0012612.1 MGP_C3HHeJ_G0010716.1 mouse_genomes_project 11 101457279 101457567 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012475.1 MGP_C3HHeJ_G0010579.1 mouse_genomes_project 11 48461319 48461806 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029702.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69165550 69170888 - Chd3 protein_coding retained_intron MGP_C3HHeJ_T0029703.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69165550 69168297 - Chd3 protein_coding retained_intron MGP_C3HHeJ_T0029704.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69165550 69191635 - MGP_C3HHeJ_P0029704 Chd3 protein_coding protein_coding MGP_C3HHeJ_T0029705.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69166628 69191623 - MGP_C3HHeJ_P0029705 Chd3 protein_coding protein_coding MGP_C3HHeJ_T0029706.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69167413 69187031 - MGP_C3HHeJ_P0029706 Chd3 protein_coding protein_coding MGP_C3HHeJ_T0029707.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69168413 69169412 - Chd3 protein_coding retained_intron MGP_C3HHeJ_T0029708.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69176137 69176735 - Chd3 protein_coding retained_intron MGP_C3HHeJ_T0029709.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69176730 69178897 - MGP_C3HHeJ_P0029709 Chd3 protein_coding protein_coding MGP_C3HHeJ_T0029710.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69182993 69184008 - MGP_C3HHeJ_P0029710 Chd3 protein_coding protein_coding MGP_C3HHeJ_T0029711.1 MGP_C3HHeJ_G0018281.1 mouse_genomes_project 11 69183010 69184008 - MGP_C3HHeJ_P0029711 Chd3 protein_coding protein_coding MGP_C3HHeJ_T0101122.1 MGP_C3HHeJ_G0039295.1 mouse_genomes_project 11 120098890 120099966 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101123.1 MGP_C3HHeJ_G0039295.1 mouse_genomes_project 11 120098949 120099376 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0029817.1 MGP_C3HHeJ_G0018313.1 mouse_genomes_project 11 69712324 69713424 + MGP_C3HHeJ_P0029817 Tmem256 protein_coding protein_coding MGP_C3HHeJ_T0029818.1 MGP_C3HHeJ_G0018313.1 mouse_genomes_project 11 69712334 69713429 + MGP_C3HHeJ_P0029818 Tmem256 protein_coding protein_coding MGP_C3HHeJ_T0029819.1 MGP_C3HHeJ_G0018313.1 mouse_genomes_project 11 69712365 69713258 + Tmem256 protein_coding processed_transcript MGP_C3HHeJ_T0029820.1 MGP_C3HHeJ_G0018313.1 mouse_genomes_project 11 69712373 69713423 + Tmem256 protein_coding processed_transcript MGP_C3HHeJ_T0029821.1 MGP_C3HHeJ_G0018313.1 mouse_genomes_project 11 69712448 69713384 + Tmem256 protein_coding processed_transcript MGP_C3HHeJ_T0012620.1 MGP_C3HHeJ_G0010724.1 mouse_genomes_project 11 104412308 104412629 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098268.1 MGP_C3HHeJ_G0036480.1 mouse_genomes_project 11 87734982 87735113 - Gm22387 scaRNA scaRNA MGP_C3HHeJ_T0031369.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91452672 91611957 - MGP_C3HHeJ_P0031369 Stxbp4 protein_coding protein_coding MGP_C3HHeJ_T0031370.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91468186 91524619 - MGP_C3HHeJ_P0031370 Stxbp4 protein_coding protein_coding MGP_C3HHeJ_T0031371.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91510070 91611935 - MGP_C3HHeJ_P0031371 Stxbp4 protein_coding protein_coding MGP_C3HHeJ_T0031372.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91570996 91611938 - MGP_C3HHeJ_P0031372 Stxbp4 protein_coding protein_coding MGP_C3HHeJ_T0031373.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91575616 91611949 - MGP_C3HHeJ_P0031373 Stxbp4 protein_coding protein_coding MGP_C3HHeJ_T0031374.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91592001 91604809 - MGP_C3HHeJ_P0031374 Stxbp4 protein_coding protein_coding MGP_C3HHeJ_T0031375.1 MGP_C3HHeJ_G0018694.1 mouse_genomes_project 11 91604102 91611946 - Stxbp4 protein_coding processed_transcript MGP_C3HHeJ_T0033084.1 MGP_C3HHeJ_G0019117.1 mouse_genomes_project 11 117494543 117520393 - MGP_C3HHeJ_P0033084 Cd300ld protein_coding protein_coding MGP_C3HHeJ_T0009577.1 MGP_C3HHeJ_G0007710.1 mouse_genomes_project 11 26534885 26534957 + Mir216a miRNA miRNA MGP_C3HHeJ_T0012644.1 MGP_C3HHeJ_G0010748.1 mouse_genomes_project 11 116106489 116107291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027821.1 MGP_C3HHeJ_G0017799.1 mouse_genomes_project 11 8926217 8951913 + MGP_C3HHeJ_P0027821 Ikzf1 protein_coding protein_coding MGP_C3HHeJ_T0027822.1 MGP_C3HHeJ_G0017799.1 mouse_genomes_project 11 8926217 8998015 + MGP_C3HHeJ_P0027822 Ikzf1 protein_coding protein_coding MGP_C3HHeJ_T0027823.1 MGP_C3HHeJ_G0017799.1 mouse_genomes_project 11 8927139 9016133 + MGP_C3HHeJ_P0027823 Ikzf1 protein_coding protein_coding MGP_C3HHeJ_T0027824.1 MGP_C3HHeJ_G0017799.1 mouse_genomes_project 11 8927427 9016947 + MGP_C3HHeJ_P0027824 Ikzf1 protein_coding protein_coding MGP_C3HHeJ_T0027825.1 MGP_C3HHeJ_G0017799.1 mouse_genomes_project 11 8927443 9005357 + MGP_C3HHeJ_P0027825 Ikzf1 protein_coding protein_coding MGP_C3HHeJ_T0027826.1 MGP_C3HHeJ_G0017799.1 mouse_genomes_project 11 8927659 9013819 + MGP_C3HHeJ_P0027826 Ikzf1 protein_coding protein_coding MGP_C3HHeJ_T0012404.1 MGP_C3HHeJ_G0010508.1 mouse_genomes_project 11 18681938 18682540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032731.1 MGP_C3HHeJ_G0019038.1 mouse_genomes_project 11 107970227 107976821 - MGP_C3HHeJ_P0032731 Cyb561 protein_coding protein_coding MGP_C3HHeJ_T0032732.1 MGP_C3HHeJ_G0019038.1 mouse_genomes_project 11 107971617 107980658 - MGP_C3HHeJ_P0032732 Cyb561 protein_coding protein_coding MGP_C3HHeJ_T0032733.1 MGP_C3HHeJ_G0019038.1 mouse_genomes_project 11 107972022 107972711 - Cyb561 protein_coding processed_transcript MGP_C3HHeJ_T0032734.1 MGP_C3HHeJ_G0019038.1 mouse_genomes_project 11 107972332 107990210 - MGP_C3HHeJ_P0032734 Cyb561 protein_coding protein_coding MGP_C3HHeJ_T0032735.1 MGP_C3HHeJ_G0019038.1 mouse_genomes_project 11 107972743 107980948 - MGP_C3HHeJ_P0032735 Cyb561 protein_coding protein_coding MGP_C3HHeJ_T0032736.1 MGP_C3HHeJ_G0019038.1 mouse_genomes_project 11 107973088 107981006 - MGP_C3HHeJ_P0032736 Cyb561 protein_coding protein_coding MGP_C3HHeJ_T0027938.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18695461 18782335 + MGP_C3HHeJ_P0027938 Vps54 protein_coding protein_coding MGP_C3HHeJ_T0027939.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18695461 18782349 + MGP_C3HHeJ_P0027939 Vps54 protein_coding protein_coding MGP_C3HHeJ_T0027940.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18726100 18781537 + MGP_C3HHeJ_P0027940 Vps54 protein_coding protein_coding MGP_C3HHeJ_T0027941.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18736096 18751311 + Vps54 protein_coding processed_transcript MGP_C3HHeJ_T0027942.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18759481 18766397 + Vps54 protein_coding processed_transcript MGP_C3HHeJ_T0027943.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18773718 18776207 + Vps54 protein_coding processed_transcript MGP_C3HHeJ_T0027944.1 MGP_C3HHeJ_G0017826.1 mouse_genomes_project 11 18775294 18781750 + Vps54 protein_coding processed_transcript MGP_C3HHeJ_T0003085.1 MGP_C3HHeJ_G0002867.1 mouse_genomes_project 11 49507417 49508663 - Gm12199 antisense antisense MGP_C3HHeJ_T0030512.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76311637 76453931 - Glod4 protein_coding retained_intron MGP_C3HHeJ_T0030524.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76416703 76453919 - MGP_C3HHeJ_P0030524 Glod4 protein_coding protein_coding MGP_C3HHeJ_T0030528.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76427705 76453981 - MGP_C3HHeJ_P0030528 Glod4 protein_coding protein_coding MGP_C3HHeJ_T0030529.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76427802 76453907 - MGP_C3HHeJ_P0030529 Glod4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030530.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76427989 76453715 - MGP_C3HHeJ_P0030530 Glod4 protein_coding protein_coding MGP_C3HHeJ_T0030531.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76442144 76453866 - MGP_C3HHeJ_P0030531 Glod4 protein_coding protein_coding MGP_C3HHeJ_T0030532.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76443161 76449834 - Glod4 protein_coding retained_intron MGP_C3HHeJ_T0030533.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76443433 76453925 - MGP_C3HHeJ_P0030533 Glod4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030534.1 MGP_C3HHeJ_G0018481.1 mouse_genomes_project 11 76447243 76453894 - MGP_C3HHeJ_P0030534 Glod4 protein_coding protein_coding MGP_C3HHeJ_T0033045.1 MGP_C3HHeJ_G0019108.1 mouse_genomes_project 11 117149946 117202395 + MGP_C3HHeJ_P0033045 Ttyh2 protein_coding protein_coding MGP_C3HHeJ_T0033046.1 MGP_C3HHeJ_G0019108.1 mouse_genomes_project 11 117150031 117169615 + Ttyh2 protein_coding processed_transcript MGP_C3HHeJ_T0016968.1 MGP_C3HHeJ_G0014932.1 mouse_genomes_project 11 57586536 57587988 + 1700047K16Rik processed_transcript processed_transcript MGP_C3HHeJ_T0006140.1 MGP_C3HHeJ_G0005119.1 mouse_genomes_project 11 31181185 31198997 + Gm12116 lincRNA lincRNA MGP_C3HHeJ_T0101659.1 MGP_C3HHeJ_G0039625.1 mouse_genomes_project 11 101264959 101265082 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003142.1 MGP_C3HHeJ_G0002915.1 mouse_genomes_project 11 66908945 66912488 - 9430073C21Rik antisense antisense MGP_C3HHeJ_T0011206.1 MGP_C3HHeJ_G0009339.1 mouse_genomes_project 11 52742475 52742785 + Gm22275 misc_RNA misc_RNA MGP_C3HHeJ_T0033233.1 MGP_C3HHeJ_G0019147.1 mouse_genomes_project 11 118237402 118297934 - MGP_C3HHeJ_P0033233 Grb2 protein_coding protein_coding MGP_C3HHeJ_T0033234.1 MGP_C3HHeJ_G0019147.1 mouse_genomes_project 11 118237402 118298161 - MGP_C3HHeJ_P0033234 Grb2 protein_coding protein_coding MGP_C3HHeJ_T0033235.1 MGP_C3HHeJ_G0019147.1 mouse_genomes_project 11 118237402 118307206 - MGP_C3HHeJ_P0033235 Grb2 protein_coding protein_coding MGP_C3HHeJ_T0033236.1 MGP_C3HHeJ_G0019147.1 mouse_genomes_project 11 118238007 118307185 - MGP_C3HHeJ_P0033236 Grb2 protein_coding protein_coding MGP_C3HHeJ_T0033237.1 MGP_C3HHeJ_G0019147.1 mouse_genomes_project 11 118243206 118298555 - MGP_C3HHeJ_P0033237 Grb2 protein_coding protein_coding MGP_C3HHeJ_T0098782.1 MGP_C3HHeJ_G0036976.1 mouse_genomes_project 11 68803323 68803414 + Gm25819 snRNA snRNA MGP_C3HHeJ_T0006268.1 MGP_C3HHeJ_G0005218.1 mouse_genomes_project 11 111557580 111564299 + 1700096J18Rik lincRNA lincRNA MGP_C3HHeJ_T0009678.1 MGP_C3HHeJ_G0007811.1 mouse_genomes_project 11 118013668 118013768 - Mir3968 miRNA miRNA MGP_C3HHeJ_T0011202.1 MGP_C3HHeJ_G0009335.1 mouse_genomes_project 11 18652075 18652344 - Gm22600 misc_RNA misc_RNA MGP_C3HHeJ_T0029765.1 MGP_C3HHeJ_G0018298.1 mouse_genomes_project 11 69509567 69511508 - MGP_C3HHeJ_P0029765 Cd68 protein_coding protein_coding MGP_C3HHeJ_T0029766.1 MGP_C3HHeJ_G0018298.1 mouse_genomes_project 11 69509660 69511417 - Cd68 protein_coding processed_transcript MGP_C3HHeJ_T0029767.1 MGP_C3HHeJ_G0018298.1 mouse_genomes_project 11 69509725 69511417 - MGP_C3HHeJ_P0029767 Cd68 protein_coding protein_coding MGP_C3HHeJ_T0097989.1 MGP_C3HHeJ_G0036201.1 mouse_genomes_project 11 21174422 21174539 - Gm23114 rRNA rRNA MGP_C3HHeJ_T0030887.1 MGP_C3HHeJ_G0018565.1 mouse_genomes_project 11 80792418 80810526 - MGP_C3HHeJ_P0030887 5730455P16Rik protein_coding protein_coding MGP_C3HHeJ_T0030888.1 MGP_C3HHeJ_G0018565.1 mouse_genomes_project 11 80792419 80810545 - MGP_C3HHeJ_P0030888 5730455P16Rik protein_coding protein_coding MGP_C3HHeJ_T0030889.1 MGP_C3HHeJ_G0018565.1 mouse_genomes_project 11 80795905 80800149 - 5730455P16Rik protein_coding retained_intron MGP_C3HHeJ_T0030890.1 MGP_C3HHeJ_G0018565.1 mouse_genomes_project 11 80802113 80810545 - MGP_C3HHeJ_P0030890 5730455P16Rik protein_coding protein_coding MGP_C3HHeJ_T0028485.1 MGP_C3HHeJ_G0017962.1 mouse_genomes_project 11 47452176 47474923 - MGP_C3HHeJ_P0028485 protein_coding protein_coding MGP_C3HHeJ_T0030686.1 MGP_C3HHeJ_G0018515.1 mouse_genomes_project 11 78371149 78377881 - Eral1 protein_coding retained_intron MGP_C3HHeJ_T0030687.1 MGP_C3HHeJ_G0018515.1 mouse_genomes_project 11 78371149 78377881 - MGP_C3HHeJ_P0030687 Eral1 protein_coding protein_coding MGP_C3HHeJ_T0030688.1 MGP_C3HHeJ_G0018515.1 mouse_genomes_project 11 78372304 78373745 - Eral1 protein_coding retained_intron MGP_C3HHeJ_T0016942.1 MGP_C3HHeJ_G0014915.1 mouse_genomes_project 11 16206835 16216148 - 8430419K02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0016943.1 MGP_C3HHeJ_G0014915.1 mouse_genomes_project 11 16206939 16230259 - 8430419K02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100046.1 MGP_C3HHeJ_G0038240.1 mouse_genomes_project 11 100526029 100526144 + Gm26394 snoRNA snoRNA MGP_C3HHeJ_T0006225.1 MGP_C3HHeJ_G0005187.1 mouse_genomes_project 11 85429823 85443788 - Gm11431 lincRNA lincRNA MGP_C3HHeJ_T0031414.1 MGP_C3HHeJ_G0018703.1 mouse_genomes_project 11 95132508 95143912 - MGP_C3HHeJ_P0031414 Nme1 protein_coding protein_coding MGP_C3HHeJ_T0031415.1 MGP_C3HHeJ_G0018703.1 mouse_genomes_project 11 95134999 95141438 - MGP_C3HHeJ_P0031415 Nme1 protein_coding protein_coding MGP_C3HHeJ_T0031416.1 MGP_C3HHeJ_G0018703.1 mouse_genomes_project 11 95136206 95143666 - MGP_C3HHeJ_P0031416 Nme1 protein_coding protein_coding MGP_C3HHeJ_T0028349.1 MGP_C3HHeJ_G0017923.1 mouse_genomes_project 11 41396381 41397894 + MGP_C3HHeJ_P0028349 Gm9972 protein_coding protein_coding MGP_C3HHeJ_T0011218.1 MGP_C3HHeJ_G0009351.1 mouse_genomes_project 11 97535597 97535733 - Gm27605 misc_RNA misc_RNA MGP_C3HHeJ_T0006232.1 MGP_C3HHeJ_G0005192.1 mouse_genomes_project 11 89116723 89120371 + Gm44783 lincRNA lincRNA MGP_C3HHeJ_T0027742.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3535133 3549580 - MGP_C3HHeJ_P0027742 Myo1g protein_coding protein_coding MGP_C3HHeJ_T0027743.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3535259 3549519 - MGP_C3HHeJ_P0027743 Myo1g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027744.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3536454 3537271 - Myo1g protein_coding retained_intron MGP_C3HHeJ_T0027745.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3541549 3549580 - Myo1g protein_coding retained_intron MGP_C3HHeJ_T0027746.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3543088 3544086 - Myo1g protein_coding retained_intron MGP_C3HHeJ_T0027747.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3546584 3549587 - MGP_C3HHeJ_P0027747 Myo1g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027748.1 MGP_C3HHeJ_G0017779.1 mouse_genomes_project 11 3547633 3548091 - MGP_C3HHeJ_P0027748 Myo1g protein_coding protein_coding MGP_C3HHeJ_T0033530.1 MGP_C3HHeJ_G0019202.1 mouse_genomes_project 11 120514646 120518418 + MGP_C3HHeJ_P0033530 Syngr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033531.1 MGP_C3HHeJ_G0019202.1 mouse_genomes_project 11 120514649 120519253 + MGP_C3HHeJ_P0033531 Syngr2 protein_coding protein_coding MGP_C3HHeJ_T0033532.1 MGP_C3HHeJ_G0019202.1 mouse_genomes_project 11 120514658 120519262 + MGP_C3HHeJ_P0033532 Syngr2 protein_coding protein_coding MGP_C3HHeJ_T0033533.1 MGP_C3HHeJ_G0019202.1 mouse_genomes_project 11 120517200 120518061 + MGP_C3HHeJ_P0033533 Syngr2 protein_coding protein_coding MGP_C3HHeJ_T0033534.1 MGP_C3HHeJ_G0019202.1 mouse_genomes_project 11 120517933 120518355 + Syngr2 protein_coding retained_intron MGP_C3HHeJ_T0006131.1 MGP_C3HHeJ_G0005112.1 mouse_genomes_project 11 27375425 27408966 - Gm12092 lincRNA lincRNA MGP_C3HHeJ_T0012365.1 MGP_C3HHeJ_G0010469.1 mouse_genomes_project 11 3924658 3925418 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012430.1 MGP_C3HHeJ_G0010534.1 mouse_genomes_project 11 27465139 27466734 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006186.1 MGP_C3HHeJ_G0005160.1 mouse_genomes_project 11 66821640 66829249 - 2310065F04Rik lincRNA lincRNA MGP_C3HHeJ_T0006187.1 MGP_C3HHeJ_G0005160.1 mouse_genomes_project 11 66823187 66826018 - 2310065F04Rik lincRNA lincRNA MGP_C3HHeJ_T0033101.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117736504 117741732 - MGP_C3HHeJ_P0033101 Nat9 protein_coding protein_coding MGP_C3HHeJ_T0033102.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117736504 117742221 - MGP_C3HHeJ_P0033102 Nat9 protein_coding protein_coding MGP_C3HHeJ_T0033103.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117736504 117741709 - MGP_C3HHeJ_P0033103 Nat9 protein_coding protein_coding MGP_C3HHeJ_T0033104.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117736504 117741767 - MGP_C3HHeJ_P0033104 Nat9 protein_coding protein_coding MGP_C3HHeJ_T0033105.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117738933 117741639 - Nat9 protein_coding processed_transcript MGP_C3HHeJ_T0033106.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117739037 117741458 - Nat9 protein_coding processed_transcript MGP_C3HHeJ_T0033107.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117739227 117742219 - Nat9 protein_coding processed_transcript MGP_C3HHeJ_T0033108.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117739228 117742236 - Nat9 protein_coding processed_transcript MGP_C3HHeJ_T0033109.1 MGP_C3HHeJ_G0019123.1 mouse_genomes_project 11 117739411 117741653 - Nat9 protein_coding processed_transcript MGP_C3HHeJ_T0029539.1 MGP_C3HHeJ_G0018247.1 mouse_genomes_project 11 67519274 67534338 + MGP_C3HHeJ_P0029539 Gsg1l2 protein_coding protein_coding MGP_C3HHeJ_T0029540.1 MGP_C3HHeJ_G0018247.1 mouse_genomes_project 11 67525605 67529764 + MGP_C3HHeJ_P0029540 Gsg1l2 protein_coding protein_coding MGP_C3HHeJ_T0029963.1 MGP_C3HHeJ_G0018341.1 mouse_genomes_project 11 70135906 70140532 - MGP_C3HHeJ_P0029963 Rnasek protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029968.1 MGP_C3HHeJ_G0018341.1 mouse_genomes_project 11 70135950 70140505 - MGP_C3HHeJ_P0029968 Rnasek protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029251.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60631495 60657874 + MGP_C3HHeJ_P0029251 Tnfrsf13b protein_coding protein_coding MGP_C3HHeJ_T0029252.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60631498 60655373 + MGP_C3HHeJ_P0029252 Tnfrsf13b protein_coding protein_coding MGP_C3HHeJ_T0029253.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60631529 60655416 + MGP_C3HHeJ_P0029253 Tnfrsf13b protein_coding protein_coding MGP_C3HHeJ_T0029254.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60649360 60656144 + MGP_C3HHeJ_P0029254 Tnfrsf13b protein_coding protein_coding MGP_C3HHeJ_T0029255.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60650990 60656435 + Tnfrsf13b protein_coding processed_transcript MGP_C3HHeJ_T0029256.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60651028 60656308 + Tnfrsf13b protein_coding processed_transcript MGP_C3HHeJ_T0029257.1 MGP_C3HHeJ_G0018185.1 mouse_genomes_project 11 60651194 60656261 + Tnfrsf13b protein_coding processed_transcript MGP_C3HHeJ_T0027426.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 191915 206421 + MGP_C3HHeJ_P0027426 Pik3ip1 protein_coding protein_coding MGP_C3HHeJ_T0027427.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 192242 193622 + Pik3ip1 protein_coding retained_intron MGP_C3HHeJ_T0027428.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 192301 205133 + MGP_C3HHeJ_P0027428 Pik3ip1 protein_coding protein_coding MGP_C3HHeJ_T0027429.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 192307 195481 + Pik3ip1 protein_coding retained_intron MGP_C3HHeJ_T0027430.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 192322 195483 + MGP_C3HHeJ_P0027430 Pik3ip1 protein_coding protein_coding MGP_C3HHeJ_T0027431.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 193590 195198 + Pik3ip1 protein_coding retained_intron MGP_C3HHeJ_T0027432.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 193627 205124 + MGP_C3HHeJ_P0027432 Pik3ip1 protein_coding protein_coding MGP_C3HHeJ_T0027433.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 193969 205142 + MGP_C3HHeJ_P0027433 Pik3ip1 protein_coding protein_coding MGP_C3HHeJ_T0027434.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 194490 195479 + Pik3ip1 protein_coding processed_transcript MGP_C3HHeJ_T0027435.1 MGP_C3HHeJ_G0017709.1 mouse_genomes_project 11 195898 205455 + Pik3ip1 protein_coding processed_transcript MGP_C3HHeJ_T0028902.1 MGP_C3HHeJ_G0018072.1 mouse_genomes_project 11 54021681 54028808 + MGP_C3HHeJ_P0028902 Gpx3 protein_coding protein_coding MGP_C3HHeJ_T0028903.1 MGP_C3HHeJ_G0018072.1 mouse_genomes_project 11 54022000 54029609 + MGP_C3HHeJ_P0028903 Gpx3 protein_coding protein_coding MGP_C3HHeJ_T0028904.1 MGP_C3HHeJ_G0018072.1 mouse_genomes_project 11 54022154 54028766 + MGP_C3HHeJ_P0028904 Gpx3 protein_coding protein_coding MGP_C3HHeJ_T0009625.1 MGP_C3HHeJ_G0007758.1 mouse_genomes_project 11 74996151 74996219 - Mir6926 miRNA miRNA MGP_C3HHeJ_T0003161.1 MGP_C3HHeJ_G0002930.1 mouse_genomes_project 11 77238766 77239726 - Gm12343 antisense antisense MGP_C3HHeJ_T0012568.1 MGP_C3HHeJ_G0010672.1 mouse_genomes_project 11 80308839 80308986 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011700.1 MGP_C3HHeJ_G0009830.1 mouse_genomes_project 11 73427818 73431946 - MGP_C3HHeJ_P0011700 Olfr377-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0031812.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99448339 99471945 - MGP_C3HHeJ_P0031812 Cacnb1 protein_coding protein_coding MGP_C3HHeJ_T0031813.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99448349 99471932 - MGP_C3HHeJ_P0031813 Cacnb1 protein_coding protein_coding MGP_C3HHeJ_T0031814.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99451580 99467736 - MGP_C3HHeJ_P0031814 Cacnb1 protein_coding protein_coding MGP_C3HHeJ_T0031815.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99451758 99471945 - MGP_C3HHeJ_P0031815 Cacnb1 protein_coding protein_coding MGP_C3HHeJ_T0031816.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99451758 99471945 - MGP_C3HHeJ_P0031816 Cacnb1 protein_coding protein_coding MGP_C3HHeJ_T0031817.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99456440 99472345 - Cacnb1 protein_coding processed_transcript MGP_C3HHeJ_T0031818.1 MGP_C3HHeJ_G0018802.1 mouse_genomes_project 11 99456475 99459370 - Cacnb1 protein_coding processed_transcript MGP_C3HHeJ_T0033199.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118169427 118190277 - MGP_C3HHeJ_P0033199 Gga3 protein_coding protein_coding MGP_C3HHeJ_T0033200.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118169427 118190277 - MGP_C3HHeJ_P0033200 Gga3 protein_coding protein_coding MGP_C3HHeJ_T0033201.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118169427 118190277 - MGP_C3HHeJ_P0033201 Gga3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033202.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118169536 118175708 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033203.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118170876 118174228 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033204.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118170959 118190110 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033205.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118172757 118173200 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033206.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118173108 118190102 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033207.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118173649 118190114 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033208.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118177828 118190119 - MGP_C3HHeJ_P0033208 Gga3 protein_coding protein_coding MGP_C3HHeJ_T0033209.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118178685 118189950 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0033210.1 MGP_C3HHeJ_G0019143.1 mouse_genomes_project 11 118178703 118190106 - Gga3 protein_coding processed_transcript MGP_C3HHeJ_T0009585.1 MGP_C3HHeJ_G0007718.1 mouse_genomes_project 11 44560496 44560617 + Mir8100 miRNA miRNA MGP_C3HHeJ_T0012573.1 MGP_C3HHeJ_G0010677.1 mouse_genomes_project 11 83230892 83231995 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0032050.1 MGP_C3HHeJ_G0018898.1 mouse_genomes_project 11 101926186 101930999 - MGP_C3HHeJ_P0032050 Krt17 protein_coding protein_coding MGP_C3HHeJ_T0029786.1 MGP_C3HHeJ_G0018301.1 mouse_genomes_project 11 69541054 69556536 - MGP_C3HHeJ_P0029786 Tnfsfm13 protein_coding protein_coding MGP_C3HHeJ_T0029789.1 MGP_C3HHeJ_G0018301.1 mouse_genomes_project 11 69541525 69556248 - MGP_C3HHeJ_P0029789 Tnfsfm13 protein_coding protein_coding MGP_C3HHeJ_T0029790.1 MGP_C3HHeJ_G0018301.1 mouse_genomes_project 11 69541708 69556247 - MGP_C3HHeJ_P0029790 Tnfsfm13 protein_coding protein_coding MGP_C3HHeJ_T0032116.1 MGP_C3HHeJ_G0018913.1 mouse_genomes_project 11 102318775 102326644 + MGP_C3HHeJ_P0032116 Nkiras2 protein_coding protein_coding MGP_C3HHeJ_T0032117.1 MGP_C3HHeJ_G0018913.1 mouse_genomes_project 11 102319814 102326261 + MGP_C3HHeJ_P0032117 Nkiras2 protein_coding protein_coding MGP_C3HHeJ_T0032118.1 MGP_C3HHeJ_G0018913.1 mouse_genomes_project 11 102322404 102327452 + MGP_C3HHeJ_P0032118 Nkiras2 protein_coding protein_coding MGP_C3HHeJ_T0032119.1 MGP_C3HHeJ_G0018913.1 mouse_genomes_project 11 102322448 102324723 + Nkiras2 protein_coding processed_transcript MGP_C3HHeJ_T0032120.1 MGP_C3HHeJ_G0018913.1 mouse_genomes_project 11 102322476 102326431 + Nkiras2 protein_coding processed_transcript MGP_C3HHeJ_T0032121.1 MGP_C3HHeJ_G0018913.1 mouse_genomes_project 11 102322539 102325962 + MGP_C3HHeJ_P0032121 Nkiras2 protein_coding protein_coding MGP_C3HHeJ_T0029282.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60963154 60968819 - MGP_C3HHeJ_P0029282 Rnf112 protein_coding protein_coding MGP_C3HHeJ_T0029283.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60963154 60968718 - MGP_C3HHeJ_P0029283 Rnf112 protein_coding protein_coding MGP_C3HHeJ_T0029284.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60963154 60968718 - MGP_C3HHeJ_P0029284 Rnf112 protein_coding protein_coding MGP_C3HHeJ_T0029285.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60966757 60968844 - Rnf112 protein_coding processed_transcript MGP_C3HHeJ_T0029286.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60966975 60968632 - Rnf112 protein_coding processed_transcript MGP_C3HHeJ_T0029287.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60967447 60968655 - Rnf112 protein_coding processed_transcript MGP_C3HHeJ_T0029288.1 MGP_C3HHeJ_G0018191.1 mouse_genomes_project 11 60967628 60968646 - Rnf112 protein_coding processed_transcript MGP_C3HHeJ_T0032020.1 MGP_C3HHeJ_G0018876.1 mouse_genomes_project 11 101477561 101478706 + MGP_C3HHeJ_P0032020 Gm11568 protein_coding protein_coding MGP_C3HHeJ_T0028189.1 MGP_C3HHeJ_G0017881.1 mouse_genomes_project 11 30106176 30119861 - MGP_C3HHeJ_P0028189 Il9r protein_coding protein_coding MGP_C3HHeJ_T0028190.1 MGP_C3HHeJ_G0017881.1 mouse_genomes_project 11 30107632 30119918 - MGP_C3HHeJ_P0028190 Il9r protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028191.1 MGP_C3HHeJ_G0017881.1 mouse_genomes_project 11 30108918 30119875 - MGP_C3HHeJ_P0028191 Il9r protein_coding protein_coding MGP_C3HHeJ_T0028192.1 MGP_C3HHeJ_G0017881.1 mouse_genomes_project 11 30109134 30119861 - MGP_C3HHeJ_P0028192 Il9r protein_coding protein_coding MGP_C3HHeJ_T0028193.1 MGP_C3HHeJ_G0017881.1 mouse_genomes_project 11 30114415 30119918 - Il9r protein_coding retained_intron MGP_C3HHeJ_T0033047.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117208760 117230621 + Dnaic2 protein_coding processed_transcript MGP_C3HHeJ_T0033048.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117208764 117243210 + MGP_C3HHeJ_P0033048 Dnaic2 protein_coding protein_coding MGP_C3HHeJ_T0033049.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117208768 117239677 + Dnaic2 protein_coding processed_transcript MGP_C3HHeJ_T0033050.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117210485 117243210 + MGP_C3HHeJ_P0033050 Dnaic2 protein_coding protein_coding MGP_C3HHeJ_T0033051.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117215918 117239787 + MGP_C3HHeJ_P0033051 Dnaic2 protein_coding protein_coding MGP_C3HHeJ_T0033052.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117215936 117242592 + MGP_C3HHeJ_P0033052 Dnaic2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0033053.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117221840 117239394 + Dnaic2 protein_coding processed_transcript MGP_C3HHeJ_T0033054.1 MGP_C3HHeJ_G0019109.1 mouse_genomes_project 11 117238000 117242483 + Dnaic2 protein_coding processed_transcript MGP_C3HHeJ_T0003182.1 MGP_C3HHeJ_G0002947.1 mouse_genomes_project 11 86476040 86486149 - Bcas3os2 antisense antisense MGP_C3HHeJ_T0031356.1 MGP_C3HHeJ_G0018690.1 mouse_genomes_project 11 90923327 90945550 - MGP_C3HHeJ_P0031356 Pctp protein_coding protein_coding MGP_C3HHeJ_T0029513.1 MGP_C3HHeJ_G0018239.1 mouse_genomes_project 11 66882791 66886349 + protein_coding retained_intron MGP_C3HHeJ_T0030576.1 MGP_C3HHeJ_G0018495.1 mouse_genomes_project 11 77228118 77263518 + MGP_C3HHeJ_P0030576 Slc6a4 protein_coding protein_coding MGP_C3HHeJ_T0030577.1 MGP_C3HHeJ_G0018495.1 mouse_genomes_project 11 77228131 77263519 + MGP_C3HHeJ_P0030577 Slc6a4 protein_coding protein_coding MGP_C3HHeJ_T0030578.1 MGP_C3HHeJ_G0018495.1 mouse_genomes_project 11 77239126 77242898 + MGP_C3HHeJ_P0030578 Slc6a4 protein_coding protein_coding MGP_C3HHeJ_T0030579.1 MGP_C3HHeJ_G0018495.1 mouse_genomes_project 11 77247884 77251948 + Slc6a4 protein_coding retained_intron MGP_C3HHeJ_T0028949.1 MGP_C3HHeJ_G0018087.1 mouse_genomes_project 11 56208252 56533893 + MGP_C3HHeJ_P0028949 Gria1 protein_coding protein_coding MGP_C3HHeJ_T0028950.1 MGP_C3HHeJ_G0018087.1 mouse_genomes_project 11 56208398 56533892 + MGP_C3HHeJ_P0028950 Gria1 protein_coding protein_coding MGP_C3HHeJ_T0028951.1 MGP_C3HHeJ_G0018087.1 mouse_genomes_project 11 56208476 56531276 + MGP_C3HHeJ_P0028951 Gria1 protein_coding protein_coding MGP_C3HHeJ_T0028952.1 MGP_C3HHeJ_G0018087.1 mouse_genomes_project 11 56382088 56392666 + Gria1 protein_coding processed_transcript MGP_C3HHeJ_T0012464.1 MGP_C3HHeJ_G0010568.1 mouse_genomes_project 11 42908070 42909073 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003279.1 MGP_C3HHeJ_G0003025.1 mouse_genomes_project 11 119747768 119749888 - Gm11730 antisense antisense MGP_C3HHeJ_T0003280.1 MGP_C3HHeJ_G0003025.1 mouse_genomes_project 11 119747905 119749848 - Gm11730 antisense antisense MGP_C3HHeJ_T0028175.1 MGP_C3HHeJ_G0017876.1 mouse_genomes_project 11 29252782 29265542 - MGP_C3HHeJ_P0028175 Stc2 protein_coding protein_coding MGP_C3HHeJ_T0028176.1 MGP_C3HHeJ_G0017876.1 mouse_genomes_project 11 29253461 29264571 - Stc2 protein_coding processed_transcript MGP_C3HHeJ_T0028177.1 MGP_C3HHeJ_G0017876.1 mouse_genomes_project 11 29260916 29263634 - Stc2 protein_coding processed_transcript MGP_C3HHeJ_T0028178.1 MGP_C3HHeJ_G0017876.1 mouse_genomes_project 11 29263466 29265515 - Stc2 protein_coding processed_transcript MGP_C3HHeJ_T0028179.1 MGP_C3HHeJ_G0017876.1 mouse_genomes_project 11 29263470 29264524 - Stc2 protein_coding processed_transcript MGP_C3HHeJ_T0030624.1 MGP_C3HHeJ_G0018506.1 mouse_genomes_project 11 77963804 77998111 + MGP_C3HHeJ_P0030624 Nufip2 protein_coding protein_coding MGP_C3HHeJ_T0030625.1 MGP_C3HHeJ_G0018506.1 mouse_genomes_project 11 77963821 78027820 + MGP_C3HHeJ_P0030625 Nufip2 protein_coding protein_coding MGP_C3HHeJ_T0030626.1 MGP_C3HHeJ_G0018506.1 mouse_genomes_project 11 77965108 77974650 + Nufip2 protein_coding processed_transcript MGP_C3HHeJ_T0030627.1 MGP_C3HHeJ_G0018506.1 mouse_genomes_project 11 77965250 77974448 + Nufip2 protein_coding processed_transcript MGP_C3HHeJ_T0030199.1 MGP_C3HHeJ_G0018388.1 mouse_genomes_project 11 72289104 72296587 + MGP_C3HHeJ_P0030199 Xaf1 protein_coding protein_coding MGP_C3HHeJ_T0030200.1 MGP_C3HHeJ_G0018388.1 mouse_genomes_project 11 72289105 72302247 + MGP_C3HHeJ_P0030200 Xaf1 protein_coding protein_coding MGP_C3HHeJ_T0030201.1 MGP_C3HHeJ_G0018388.1 mouse_genomes_project 11 72289114 72299607 + MGP_C3HHeJ_P0030201 Xaf1 protein_coding protein_coding MGP_C3HHeJ_T0030202.1 MGP_C3HHeJ_G0018388.1 mouse_genomes_project 11 72289138 72296275 + MGP_C3HHeJ_P0030202 Xaf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030203.1 MGP_C3HHeJ_G0018388.1 mouse_genomes_project 11 72289140 72296294 + Xaf1 protein_coding retained_intron MGP_C3HHeJ_T0028493.1 MGP_C3HHeJ_G0017967.1 mouse_genomes_project 11 47712920 47730203 - MGP_C3HHeJ_P0028493 protein_coding protein_coding MGP_C3HHeJ_T0012639.1 MGP_C3HHeJ_G0010743.1 mouse_genomes_project 11 111200859 111201990 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028661.1 MGP_C3HHeJ_G0018014.1 mouse_genomes_project 11 49865967 49866780 + Zfp354a protein_coding processed_transcript MGP_C3HHeJ_T0028662.1 MGP_C3HHeJ_G0018014.1 mouse_genomes_project 11 49866035 49876734 + MGP_C3HHeJ_P0028662 Zfp354a protein_coding protein_coding MGP_C3HHeJ_T0012526.1 MGP_C3HHeJ_G0010630.1 mouse_genomes_project 11 66238115 66239094 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031024.1 MGP_C3HHeJ_G0018607.1 mouse_genomes_project 11 84176452 84182169 - MGP_C3HHeJ_P0031024 Ccl9 protein_coding protein_coding MGP_C3HHeJ_T0031025.1 MGP_C3HHeJ_G0018607.1 mouse_genomes_project 11 84178850 84180675 - Ccl9 protein_coding processed_transcript MGP_C3HHeJ_T0012463.1 MGP_C3HHeJ_G0010567.1 mouse_genomes_project 11 42811191 42811351 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028728.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937590 50972943 + MGP_C3HHeJ_P0028728 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028729.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937590 50975418 + MGP_C3HHeJ_P0028729 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028730.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937590 51020617 + MGP_C3HHeJ_P0028730 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028731.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937590 50968580 + MGP_C3HHeJ_P0028731 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028732.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937590 50972943 + MGP_C3HHeJ_P0028732 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028733.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937594 50963536 + MGP_C3HHeJ_P0028733 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028734.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937610 50968647 + MGP_C3HHeJ_P0028734 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028735.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937623 50954190 + MGP_C3HHeJ_P0028735 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028736.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937634 50992155 + MGP_C3HHeJ_P0028736 Cdkl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028737.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937659 50972943 + MGP_C3HHeJ_P0028737 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028738.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50937679 51025733 + MGP_C3HHeJ_P0028738 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028739.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50962725 51021059 + MGP_C3HHeJ_P0028739 Cdkl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028740.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50962949 50968502 + MGP_C3HHeJ_P0028740 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028741.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50967139 51025728 + MGP_C3HHeJ_P0028741 Cdkl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0028742.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50967224 51025734 + MGP_C3HHeJ_P0028742 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0028743.1 MGP_C3HHeJ_G0018031.1 mouse_genomes_project 11 50968304 51025726 + MGP_C3HHeJ_P0028743 Cdkl3 protein_coding protein_coding MGP_C3HHeJ_T0030380.1 MGP_C3HHeJ_G0018453.1 mouse_genomes_project 11 74975282 75018786 - MGP_C3HHeJ_P0030380 Sgsm2 protein_coding protein_coding MGP_C3HHeJ_T0030381.1 MGP_C3HHeJ_G0018453.1 mouse_genomes_project 11 74975287 75018786 - MGP_C3HHeJ_P0030381 Sgsm2 protein_coding protein_coding MGP_C3HHeJ_T0030382.1 MGP_C3HHeJ_G0018453.1 mouse_genomes_project 11 74984384 74988362 - Sgsm2 protein_coding retained_intron MGP_C3HHeJ_T0030383.1 MGP_C3HHeJ_G0018453.1 mouse_genomes_project 11 74995453 74997117 - Sgsm2 protein_coding retained_intron MGP_C3HHeJ_T0030384.1 MGP_C3HHeJ_G0018453.1 mouse_genomes_project 11 74995463 74996413 - Sgsm2 protein_coding retained_intron MGP_C3HHeJ_T0032017.1 MGP_C3HHeJ_G0018873.1 mouse_genomes_project 11 101398450 101413996 - MGP_C3HHeJ_P0032017 protein_coding protein_coding MGP_C3HHeJ_T0003061.1 MGP_C3HHeJ_G0002845.1 mouse_genomes_project 11 16372823 16374914 + Gm16140 antisense antisense MGP_C3HHeJ_T0003062.1 MGP_C3HHeJ_G0002845.1 mouse_genomes_project 11 16372825 16374488 + Gm16140 antisense antisense MGP_C3HHeJ_T0006228.1 MGP_C3HHeJ_G0005190.1 mouse_genomes_project 11 88884790 88894022 - 2010015M23Rik lincRNA lincRNA MGP_C3HHeJ_T0030912.1 MGP_C3HHeJ_G0018568.1 mouse_genomes_project 11 80928236 80932361 + MGP_C3HHeJ_P0030912 Cdk5r1 protein_coding protein_coding MGP_C3HHeJ_T0030913.1 MGP_C3HHeJ_G0018568.1 mouse_genomes_project 11 80928269 80929137 + MGP_C3HHeJ_P0030913 Cdk5r1 protein_coding protein_coding MGP_C3HHeJ_T0032536.1 MGP_C3HHeJ_G0018995.1 mouse_genomes_project 11 104689005 104709722 - MGP_C3HHeJ_P0032536 Gjc1 protein_coding protein_coding MGP_C3HHeJ_T0032537.1 MGP_C3HHeJ_G0018995.1 mouse_genomes_project 11 104689005 104694179 - MGP_C3HHeJ_P0032537 Gjc1 protein_coding protein_coding MGP_C3HHeJ_T0032538.1 MGP_C3HHeJ_G0018995.1 mouse_genomes_project 11 104689005 104709201 - MGP_C3HHeJ_P0032538 Gjc1 protein_coding protein_coding MGP_C3HHeJ_T0032539.1 MGP_C3HHeJ_G0018995.1 mouse_genomes_project 11 104690160 104695074 - Gjc1 protein_coding retained_intron MGP_C3HHeJ_T0032540.1 MGP_C3HHeJ_G0018995.1 mouse_genomes_project 11 104690605 104709232 - Gjc1 protein_coding processed_transcript MGP_C3HHeJ_T0003192.1 MGP_C3HHeJ_G0002955.1 mouse_genomes_project 11 89991686 89996027 + Dgkeos antisense antisense MGP_C3HHeJ_T0003193.1 MGP_C3HHeJ_G0002955.1 mouse_genomes_project 11 89993023 89996027 + Dgkeos antisense antisense MGP_C3HHeJ_T0003194.1 MGP_C3HHeJ_G0002955.1 mouse_genomes_project 11 89993197 89994810 + Dgkeos antisense antisense MGP_C3HHeJ_T0003195.1 MGP_C3HHeJ_G0002955.1 mouse_genomes_project 11 89993201 89994810 + Dgkeos antisense antisense MGP_C3HHeJ_T0009692.1 MGP_C3HHeJ_G0007825.1 mouse_genomes_project 11 124285588 124285648 - Mir7236 miRNA miRNA MGP_C3HHeJ_T0028350.1 MGP_C3HHeJ_G0017924.1 mouse_genomes_project 11 41518505 41528108 + Atp10b protein_coding processed_transcript MGP_C3HHeJ_T0028351.1 MGP_C3HHeJ_G0017924.1 mouse_genomes_project 11 41520216 41631545 + MGP_C3HHeJ_P0028351 Atp10b protein_coding protein_coding MGP_C3HHeJ_T0028352.1 MGP_C3HHeJ_G0017924.1 mouse_genomes_project 11 41524497 41572802 + Atp10b protein_coding processed_transcript MGP_C3HHeJ_T0027668.1 MGP_C3HHeJ_G0017760.1 mouse_genomes_project 11 2775203 2789885 + MGP_C3HHeJ_P0027668 Dbnl protein_coding protein_coding MGP_C3HHeJ_T0027669.1 MGP_C3HHeJ_G0017760.1 mouse_genomes_project 11 2775237 2789544 + MGP_C3HHeJ_P0027669 Dbnl protein_coding protein_coding MGP_C3HHeJ_T0027670.1 MGP_C3HHeJ_G0017760.1 mouse_genomes_project 11 2775245 2790218 + MGP_C3HHeJ_P0027670 Dbnl protein_coding protein_coding MGP_C3HHeJ_T0029471.1 MGP_C3HHeJ_G0018228.1 mouse_genomes_project 11 64800943 64809735 - MGP_C3HHeJ_P0029471 1700086D15Rik protein_coding protein_coding MGP_C3HHeJ_T0029472.1 MGP_C3HHeJ_G0018228.1 mouse_genomes_project 11 64800943 64809734 - MGP_C3HHeJ_P0029472 1700086D15Rik protein_coding protein_coding MGP_C3HHeJ_T0033125.1 MGP_C3HHeJ_G0019129.1 mouse_genomes_project 11 117877787 117884626 - MGP_C3HHeJ_P0033125 Ush1g protein_coding protein_coding MGP_C3HHeJ_T0006104.1 MGP_C3HHeJ_G0005089.1 mouse_genomes_project 11 16439887 16451035 + 4933406G16Rik lincRNA lincRNA MGP_C3HHeJ_T0099995.1 MGP_C3HHeJ_G0038189.1 mouse_genomes_project 11 12776125 12776255 + Gm25490 snoRNA snoRNA MGP_C3HHeJ_T0031258.1 MGP_C3HHeJ_G0018662.1 mouse_genomes_project 11 88408868 88451104 + MGP_C3HHeJ_P0031258 Hsf5 protein_coding protein_coding MGP_C3HHeJ_T0012522.1 MGP_C3HHeJ_G0010626.1 mouse_genomes_project 11 62851634 62851867 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003068.1 MGP_C3HHeJ_G0002850.1 mouse_genomes_project 11 26115221 26119161 + Gm12081 antisense antisense MGP_C3HHeJ_T0099988.1 MGP_C3HHeJ_G0038182.1 mouse_genomes_project 11 3582075 3582164 - Gm24000 snoRNA snoRNA MGP_C3HHeJ_T0031899.1 MGP_C3HHeJ_G0018824.1 mouse_genomes_project 11 100206780 100209163 + MGP_C3HHeJ_P0031899 Csf3 protein_coding protein_coding MGP_C3HHeJ_T0027473.1 MGP_C3HHeJ_G0017716.1 mouse_genomes_project 11 526908 568435 + MGP_C3HHeJ_P0027473 Morc2a protein_coding protein_coding MGP_C3HHeJ_T0027474.1 MGP_C3HHeJ_G0017716.1 mouse_genomes_project 11 527173 546829 + MGP_C3HHeJ_P0027474 Morc2a protein_coding protein_coding MGP_C3HHeJ_T0027475.1 MGP_C3HHeJ_G0017716.1 mouse_genomes_project 11 527667 568542 + MGP_C3HHeJ_P0027475 Morc2a protein_coding protein_coding MGP_C3HHeJ_T0027476.1 MGP_C3HHeJ_G0017716.1 mouse_genomes_project 11 557325 561972 + Morc2a protein_coding processed_transcript MGP_C3HHeJ_T0027477.1 MGP_C3HHeJ_G0017716.1 mouse_genomes_project 11 557685 558570 + Morc2a protein_coding processed_transcript MGP_C3HHeJ_T0027478.1 MGP_C3HHeJ_G0017716.1 mouse_genomes_project 11 557780 561754 + Morc2a protein_coding processed_transcript MGP_C3HHeJ_T0016993.1 MGP_C3HHeJ_G0014946.1 mouse_genomes_project 11 75749242 75754659 - 4931413K12Rik processed_transcript processed_transcript MGP_C3HHeJ_T0031031.1 MGP_C3HHeJ_G0018611.1 mouse_genomes_project 11 84274832 84276941 + MGP_C3HHeJ_P0031031 Ccl4 protein_coding protein_coding MGP_C3HHeJ_T0033164.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118028129 118041314 + MGP_C3HHeJ_P0033164 Slc16a5 protein_coding protein_coding MGP_C3HHeJ_T0033165.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118028161 118036245 + MGP_C3HHeJ_P0033165 Slc16a5 protein_coding protein_coding MGP_C3HHeJ_T0033166.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118028219 118036350 + Slc16a5 protein_coding processed_transcript MGP_C3HHeJ_T0033167.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118028264 118039837 + MGP_C3HHeJ_P0033167 Slc16a5 protein_coding protein_coding MGP_C3HHeJ_T0033168.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118029455 118041314 + Slc16a5 protein_coding processed_transcript MGP_C3HHeJ_T0033169.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118029470 118030652 + Slc16a5 protein_coding processed_transcript MGP_C3HHeJ_T0033170.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118029473 118036350 + Slc16a5 protein_coding processed_transcript MGP_C3HHeJ_T0033171.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118029479 118036294 + Slc16a5 protein_coding processed_transcript MGP_C3HHeJ_T0033172.1 MGP_C3HHeJ_G0019137.1 mouse_genomes_project 11 118030203 118040522 + Slc16a5 protein_coding retained_intron MGP_C3HHeJ_T0006213.1 MGP_C3HHeJ_G0005180.1 mouse_genomes_project 11 80431913 80437088 - Gm26563 lincRNA lincRNA MGP_C3HHeJ_T0006214.1 MGP_C3HHeJ_G0005180.1 mouse_genomes_project 11 80433039 80444415 - Gm26563 lincRNA lincRNA MGP_C3HHeJ_T0029721.1 MGP_C3HHeJ_G0018286.1 mouse_genomes_project 11 69226522 69228237 - MGP_C3HHeJ_P0029721 Tmem88 protein_coding protein_coding MGP_C3HHeJ_T0012484.1 MGP_C3HHeJ_G0010588.1 mouse_genomes_project 11 52686303 52686936 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017067.1 MGP_C3HHeJ_G0014985.1 mouse_genomes_project 11 122993788 122997141 - 2810410L24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017068.1 MGP_C3HHeJ_G0014985.1 mouse_genomes_project 11 122996095 122998242 - 2810410L24Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012351.1 MGP_C3HHeJ_G0010455.1 mouse_genomes_project 11 1853087 1853581 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099986.1 MGP_C3HHeJ_G0038180.1 mouse_genomes_project 11 2533567 2533697 - Gm22471 snoRNA snoRNA MGP_C3HHeJ_T0033498.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 119860278 120036914 + MGP_C3HHeJ_P0033498 Sept9 protein_coding protein_coding MGP_C3HHeJ_T0033499.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 119899344 120036902 + MGP_C3HHeJ_P0033499 Sept9 protein_coding protein_coding MGP_C3HHeJ_T0033500.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 119933560 120036909 + MGP_C3HHeJ_P0033500 Sept9 protein_coding protein_coding MGP_C3HHeJ_T0033501.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 119981568 120026798 + MGP_C3HHeJ_P0033501 Sept9 protein_coding protein_coding MGP_C3HHeJ_T0033502.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 119999835 120030962 + MGP_C3HHeJ_P0033502 Sept9 protein_coding protein_coding MGP_C3HHeJ_T0033503.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 120006902 120036215 + Sept9 protein_coding retained_intron MGP_C3HHeJ_T0033504.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 120027765 120031585 + Sept9 protein_coding retained_intron MGP_C3HHeJ_T0033505.1 MGP_C3HHeJ_G0019195.1 mouse_genomes_project 11 120033945 120035452 + Sept9 protein_coding retained_intron MGP_C3HHeJ_T0003239.1 MGP_C3HHeJ_G0002991.1 mouse_genomes_project 11 105101007 105103192 - Gm20511 antisense antisense MGP_C3HHeJ_T0100022.1 MGP_C3HHeJ_G0038216.1 mouse_genomes_project 11 69522423 69522566 - Gm24029 snoRNA snoRNA MGP_C3HHeJ_T0003232.1 MGP_C3HHeJ_G0002984.1 mouse_genomes_project 11 103364078 103369577 - antisense antisense MGP_C3HHeJ_T0006108.1 MGP_C3HHeJ_G0005093.1 mouse_genomes_project 11 19933371 19934256 - Gm12050 lincRNA lincRNA MGP_C3HHeJ_T0012604.1 MGP_C3HHeJ_G0010708.1 mouse_genomes_project 11 98478335 98478729 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012453.1 MGP_C3HHeJ_G0010557.1 mouse_genomes_project 11 38733168 38733689 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030677.1 MGP_C3HHeJ_G0018513.1 mouse_genomes_project 11 78328396 78333983 + MGP_C3HHeJ_P0030677 Dhrs13 protein_coding protein_coding MGP_C3HHeJ_T0030678.1 MGP_C3HHeJ_G0018513.1 mouse_genomes_project 11 78328465 78333908 + MGP_C3HHeJ_P0030678 Dhrs13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030679.1 MGP_C3HHeJ_G0018513.1 mouse_genomes_project 11 78328468 78333981 + MGP_C3HHeJ_P0030679 Dhrs13 protein_coding protein_coding MGP_C3HHeJ_T0030680.1 MGP_C3HHeJ_G0018513.1 mouse_genomes_project 11 78328475 78329594 + MGP_C3HHeJ_P0030680 Dhrs13 protein_coding protein_coding MGP_C3HHeJ_T0031232.1 MGP_C3HHeJ_G0018659.1 mouse_genomes_project 11 88354950 88357548 + MGP_C3HHeJ_P0031232 Gm11492 protein_coding protein_coding MGP_C3HHeJ_T0030669.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78275609 78322331 + MGP_C3HHeJ_P0030669 Phf12 protein_coding protein_coding MGP_C3HHeJ_T0030670.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78275657 78326656 + MGP_C3HHeJ_P0030670 Phf12 protein_coding protein_coding MGP_C3HHeJ_T0030671.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78319563 78322309 + MGP_C3HHeJ_P0030671 Phf12 protein_coding protein_coding MGP_C3HHeJ_T0030672.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78319777 78322078 + Phf12 protein_coding retained_intron MGP_C3HHeJ_T0030673.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78319811 78322299 + MGP_C3HHeJ_P0030673 Phf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030674.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78319878 78324964 + MGP_C3HHeJ_P0030674 Phf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030675.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78319901 78322133 + MGP_C3HHeJ_P0030675 Phf12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030676.1 MGP_C3HHeJ_G0018512.1 mouse_genomes_project 11 78324226 78325694 + Phf12 protein_coding retained_intron MGP_C3HHeJ_T0033941.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123828346 123865056 - MGP_C3HHeJ_P0033941 Csnk1d protein_coding protein_coding MGP_C3HHeJ_T0033942.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123828346 123864818 - MGP_C3HHeJ_P0033942 Csnk1d protein_coding protein_coding MGP_C3HHeJ_T0033943.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123830245 123832284 - Csnk1d protein_coding processed_transcript MGP_C3HHeJ_T0033944.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123830370 123838223 - Csnk1d protein_coding processed_transcript MGP_C3HHeJ_T0033945.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123834209 123834659 - Csnk1d protein_coding processed_transcript MGP_C3HHeJ_T0033946.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123839069 123864597 - MGP_C3HHeJ_P0033946 Csnk1d protein_coding protein_coding MGP_C3HHeJ_T0033947.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123839087 123864713 - MGP_C3HHeJ_P0033947 Csnk1d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033948.1 MGP_C3HHeJ_G0019282.1 mouse_genomes_project 11 123855317 123864777 - Csnk1d protein_coding retained_intron MGP_C3HHeJ_T0033456.1 MGP_C3HHeJ_G0019188.1 mouse_genomes_project 11 119427748 119455749 - MGP_C3HHeJ_P0033456 Mxra7 protein_coding protein_coding MGP_C3HHeJ_T0033457.1 MGP_C3HHeJ_G0019188.1 mouse_genomes_project 11 119432328 119455716 - MGP_C3HHeJ_P0033457 Mxra7 protein_coding protein_coding MGP_C3HHeJ_T0033458.1 MGP_C3HHeJ_G0019188.1 mouse_genomes_project 11 119432520 119455706 - MGP_C3HHeJ_P0033458 Mxra7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030009.1 MGP_C3HHeJ_G0018351.1 mouse_genomes_project 11 70426944 70432936 + MGP_C3HHeJ_P0030009 Tm4sf5 protein_coding protein_coding MGP_C3HHeJ_T0030010.1 MGP_C3HHeJ_G0018351.1 mouse_genomes_project 11 70431727 70432640 + Tm4sf5 protein_coding processed_transcript MGP_C3HHeJ_T0030011.1 MGP_C3HHeJ_G0018351.1 mouse_genomes_project 11 70431963 70432725 + Tm4sf5 protein_coding retained_intron MGP_C3HHeJ_T0100005.1 MGP_C3HHeJ_G0038199.1 mouse_genomes_project 11 32883000 32883127 - Gm22022 snoRNA snoRNA MGP_C3HHeJ_T0030875.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629266 80689920 + MGP_C3HHeJ_P0030875 Rhot1 protein_coding protein_coding MGP_C3HHeJ_T0030876.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629302 80691015 + MGP_C3HHeJ_P0030876 Rhot1 protein_coding protein_coding MGP_C3HHeJ_T0030877.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629331 80690594 + MGP_C3HHeJ_P0030877 Rhot1 protein_coding protein_coding MGP_C3HHeJ_T0030878.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629360 80674297 + Rhot1 protein_coding retained_intron MGP_C3HHeJ_T0030879.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629366 80689875 + MGP_C3HHeJ_P0030879 Rhot1 protein_coding protein_coding MGP_C3HHeJ_T0030880.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629394 80668663 + Rhot1 protein_coding retained_intron MGP_C3HHeJ_T0030881.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80629534 80688967 + MGP_C3HHeJ_P0030881 Rhot1 protein_coding protein_coding MGP_C3HHeJ_T0030882.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80671933 80689846 + Rhot1 protein_coding processed_transcript MGP_C3HHeJ_T0030883.1 MGP_C3HHeJ_G0018563.1 mouse_genomes_project 11 80674688 80676967 + Rhot1 protein_coding retained_intron MGP_C3HHeJ_T0100053.1 MGP_C3HHeJ_G0038247.1 mouse_genomes_project 11 118326256 118326391 + Gm23699 snoRNA snoRNA MGP_C3HHeJ_T0006147.1 MGP_C3HHeJ_G0005126.1 mouse_genomes_project 11 41470395 41481142 - Gm12145 lincRNA lincRNA MGP_C3HHeJ_T0032959.1 MGP_C3HHeJ_G0019088.1 mouse_genomes_project 11 111876669 111881226 + Prkar1a protein_coding processed_transcript MGP_C3HHeJ_T0032960.1 MGP_C3HHeJ_G0019088.1 mouse_genomes_project 11 111876669 111896924 + MGP_C3HHeJ_P0032960 Prkar1a protein_coding protein_coding MGP_C3HHeJ_T0032961.1 MGP_C3HHeJ_G0019088.1 mouse_genomes_project 11 111877839 111889018 + MGP_C3HHeJ_P0032961 Prkar1a protein_coding protein_coding MGP_C3HHeJ_T0032962.1 MGP_C3HHeJ_G0019088.1 mouse_genomes_project 11 111878185 111896924 + MGP_C3HHeJ_P0032962 Prkar1a protein_coding protein_coding MGP_C3HHeJ_T0032963.1 MGP_C3HHeJ_G0019088.1 mouse_genomes_project 11 111893211 111894244 + Prkar1a protein_coding processed_transcript MGP_C3HHeJ_T0003098.1 MGP_C3HHeJ_G0002879.1 mouse_genomes_project 11 53436090 53454121 - Gm12224 antisense antisense MGP_C3HHeJ_T0003099.1 MGP_C3HHeJ_G0002879.1 mouse_genomes_project 11 53440364 53454072 - Gm12224 antisense antisense MGP_C3HHeJ_T0030984.1 MGP_C3HHeJ_G0018594.1 mouse_genomes_project 11 83664011 83669833 + MGP_C3HHeJ_P0030984 Slfn1 protein_coding protein_coding MGP_C3HHeJ_T0028390.1 MGP_C3HHeJ_G0017935.1 mouse_genomes_project 11 42881529 42889109 - Ublcp1 protein_coding processed_transcript MGP_C3HHeJ_T0028391.1 MGP_C3HHeJ_G0017935.1 mouse_genomes_project 11 42882813 42898494 - MGP_C3HHeJ_P0028391 Ublcp1 protein_coding protein_coding MGP_C3HHeJ_T0028392.1 MGP_C3HHeJ_G0017935.1 mouse_genomes_project 11 42883859 42892094 - Ublcp1 protein_coding processed_transcript MGP_C3HHeJ_T0028393.1 MGP_C3HHeJ_G0017935.1 mouse_genomes_project 11 42884535 42889632 - Ublcp1 protein_coding processed_transcript MGP_C3HHeJ_T0028394.1 MGP_C3HHeJ_G0017935.1 mouse_genomes_project 11 42893619 42895073 - Ublcp1 protein_coding processed_transcript MGP_C3HHeJ_T0030558.1 MGP_C3HHeJ_G0018490.1 mouse_genomes_project 11 76904890 76926468 + MGP_C3HHeJ_P0030558 Tusc5 protein_coding protein_coding MGP_C3HHeJ_T0009574.1 MGP_C3HHeJ_G0007707.1 mouse_genomes_project 11 23824788 23824897 + Mir6372 miRNA miRNA MGP_C3HHeJ_T0029777.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69530281 69539945 - MGP_C3HHeJ_P0029777 Senp3 protein_coding protein_coding MGP_C3HHeJ_T0029778.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69530282 69532143 - Senp3 protein_coding retained_intron MGP_C3HHeJ_T0029779.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69530287 69540183 - MGP_C3HHeJ_P0029779 Senp3 protein_coding protein_coding MGP_C3HHeJ_T0029780.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69530441 69536220 - Senp3 protein_coding retained_intron MGP_C3HHeJ_T0029781.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69530507 69536788 - MGP_C3HHeJ_P0029781 Senp3 protein_coding protein_coding MGP_C3HHeJ_T0029782.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69531119 69531610 - Senp3 protein_coding retained_intron MGP_C3HHeJ_T0029783.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69531399 69534114 - Senp3 protein_coding processed_transcript MGP_C3HHeJ_T0029784.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69534214 69536114 - Senp3 protein_coding retained_intron MGP_C3HHeJ_T0029785.1 MGP_C3HHeJ_G0018300.1 mouse_genomes_project 11 69536257 69537296 - Senp3 protein_coding retained_intron MGP_C3HHeJ_T0029486.1 MGP_C3HHeJ_G0018231.1 mouse_genomes_project 11 65476044 65498098 + MGP_C3HHeJ_P0029486 Zkscan6 protein_coding protein_coding MGP_C3HHeJ_T0029487.1 MGP_C3HHeJ_G0018231.1 mouse_genomes_project 11 65476113 65498099 + MGP_C3HHeJ_P0029487 Zkscan6 protein_coding protein_coding MGP_C3HHeJ_T0011217.1 MGP_C3HHeJ_G0009350.1 mouse_genomes_project 11 97535172 97535252 - Gm27898 misc_RNA misc_RNA MGP_C3HHeJ_T0029334.1 MGP_C3HHeJ_G0018199.1 mouse_genomes_project 11 61257491 61292853 - MGP_C3HHeJ_P0029334 Prpsap2 protein_coding protein_coding MGP_C3HHeJ_T0029335.1 MGP_C3HHeJ_G0018199.1 mouse_genomes_project 11 61257495 61292777 - Prpsap2 protein_coding processed_transcript MGP_C3HHeJ_T0029336.1 MGP_C3HHeJ_G0018199.1 mouse_genomes_project 11 61257495 61292827 - MGP_C3HHeJ_P0029336 Prpsap2 protein_coding protein_coding MGP_C3HHeJ_T0029337.1 MGP_C3HHeJ_G0018199.1 mouse_genomes_project 11 61286174 61292805 - Prpsap2 protein_coding processed_transcript MGP_C3HHeJ_T0006206.1 MGP_C3HHeJ_G0005176.1 mouse_genomes_project 11 78204106 78221143 - Gm11190 lincRNA lincRNA MGP_C3HHeJ_T0030809.1 MGP_C3HHeJ_G0018546.1 mouse_genomes_project 11 79306043 79331181 - MGP_C3HHeJ_P0030809 Lgals9 protein_coding protein_coding MGP_C3HHeJ_T0030810.1 MGP_C3HHeJ_G0018546.1 mouse_genomes_project 11 79306048 79331159 - MGP_C3HHeJ_P0030810 Lgals9 protein_coding protein_coding MGP_C3HHeJ_T0030811.1 MGP_C3HHeJ_G0018546.1 mouse_genomes_project 11 79306464 79331066 - MGP_C3HHeJ_P0030811 Lgals9 protein_coding protein_coding MGP_C3HHeJ_T0030812.1 MGP_C3HHeJ_G0018546.1 mouse_genomes_project 11 79309950 79313394 - Lgals9 protein_coding retained_intron MGP_C3HHeJ_T0029675.1 MGP_C3HHeJ_G0018275.1 mouse_genomes_project 11 68970013 68983645 + MGP_C3HHeJ_P0029675 Alox12b protein_coding protein_coding MGP_C3HHeJ_T0006246.1 MGP_C3HHeJ_G0005202.1 mouse_genomes_project 11 96965511 96968076 + Gm26830 lincRNA lincRNA MGP_C3HHeJ_T0012504.1 MGP_C3HHeJ_G0010608.1 mouse_genomes_project 11 57976729 57977745 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033923.1 MGP_C3HHeJ_G0019279.1 mouse_genomes_project 11 123666293 123684995 - MGP_C3HHeJ_P0033923 Fasn protein_coding protein_coding MGP_C3HHeJ_T0033924.1 MGP_C3HHeJ_G0019279.1 mouse_genomes_project 11 123667552 123684543 - MGP_C3HHeJ_P0033924 Fasn protein_coding protein_coding MGP_C3HHeJ_T0033925.1 MGP_C3HHeJ_G0019279.1 mouse_genomes_project 11 123667994 123669053 - Fasn protein_coding retained_intron MGP_C3HHeJ_T0033926.1 MGP_C3HHeJ_G0019279.1 mouse_genomes_project 11 123669011 123670149 - Fasn protein_coding retained_intron MGP_C3HHeJ_T0033927.1 MGP_C3HHeJ_G0019279.1 mouse_genomes_project 11 123674942 123675903 - Fasn protein_coding retained_intron MGP_C3HHeJ_T0033928.1 MGP_C3HHeJ_G0019279.1 mouse_genomes_project 11 123683219 123684228 - MGP_C3HHeJ_P0033928 Fasn protein_coding protein_coding MGP_C3HHeJ_T0030351.1 MGP_C3HHeJ_G0018445.1 mouse_genomes_project 11 74440280 74441329 - MGP_C3HHeJ_P0030351 Olfr411 protein_coding protein_coding MGP_C3HHeJ_T0030352.1 MGP_C3HHeJ_G0018445.1 mouse_genomes_project 11 74440548 74446267 - MGP_C3HHeJ_P0030352 Olfr411 protein_coding protein_coding MGP_C3HHeJ_T0032985.1 MGP_C3HHeJ_G0019095.1 mouse_genomes_project 11 112515849 112592495 - MGP_C3HHeJ_P0032985 Abca5 protein_coding protein_coding MGP_C3HHeJ_T0032986.1 MGP_C3HHeJ_G0019095.1 mouse_genomes_project 11 112534293 112592439 - MGP_C3HHeJ_P0032986 Abca5 protein_coding protein_coding MGP_C3HHeJ_T0032987.1 MGP_C3HHeJ_G0019095.1 mouse_genomes_project 11 112560550 112592462 - Abca5 protein_coding retained_intron MGP_C3HHeJ_T0032988.1 MGP_C3HHeJ_G0019095.1 mouse_genomes_project 11 112573856 112592457 - MGP_C3HHeJ_P0032988 Abca5 protein_coding protein_coding MGP_C3HHeJ_T0032989.1 MGP_C3HHeJ_G0019095.1 mouse_genomes_project 11 112580364 112592533 - Abca5 protein_coding processed_transcript MGP_C3HHeJ_T0032047.1 MGP_C3HHeJ_G0018896.1 mouse_genomes_project 11 101859405 101862274 - Krt14 protein_coding processed_transcript MGP_C3HHeJ_T0032048.1 MGP_C3HHeJ_G0018896.1 mouse_genomes_project 11 101859405 101863768 - MGP_C3HHeJ_P0032048 Krt14 protein_coding protein_coding MGP_C3HHeJ_T0027885.1 MGP_C3HHeJ_G0017812.1 mouse_genomes_project 11 14524980 14579003 + Wdr92 protein_coding processed_transcript MGP_C3HHeJ_T0027889.1 MGP_C3HHeJ_G0017812.1 mouse_genomes_project 11 14555435 14579885 + MGP_C3HHeJ_P0027889 Wdr92 protein_coding protein_coding MGP_C3HHeJ_T0009571.1 MGP_C3HHeJ_G0007704.1 mouse_genomes_project 11 21038576 21038667 - miRNA miRNA MGP_C3HHeJ_T0033100.1 MGP_C3HHeJ_G0019122.1 mouse_genomes_project 11 117715594 117734855 + MGP_C3HHeJ_P0033100 Slc9a3r1 protein_coding protein_coding MGP_C3HHeJ_T0033768.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123292391 123298431 + MGP_C3HHeJ_P0033768 Ccdc137 protein_coding protein_coding MGP_C3HHeJ_T0033769.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123292402 123293646 + Ccdc137 protein_coding processed_transcript MGP_C3HHeJ_T0033770.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123292414 123293122 + Ccdc137 protein_coding retained_intron MGP_C3HHeJ_T0033771.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123292418 123294388 + MGP_C3HHeJ_P0033771 Ccdc137 protein_coding protein_coding MGP_C3HHeJ_T0033772.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123292423 123296489 + MGP_C3HHeJ_P0033772 Ccdc137 protein_coding protein_coding MGP_C3HHeJ_T0033773.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123292462 123294281 + Ccdc137 protein_coding processed_transcript MGP_C3HHeJ_T0033774.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123294077 123296605 + Ccdc137 protein_coding retained_intron MGP_C3HHeJ_T0033775.1 MGP_C3HHeJ_G0019251.1 mouse_genomes_project 11 123296538 123298430 + Ccdc137 protein_coding processed_transcript MGP_C3HHeJ_T0031554.1 MGP_C3HHeJ_G0018736.1 mouse_genomes_project 11 96615494 96664473 + MGP_C3HHeJ_P0031554 Fam117a protein_coding protein_coding MGP_C3HHeJ_T0031555.1 MGP_C3HHeJ_G0018736.1 mouse_genomes_project 11 96615496 96657800 + Fam117a protein_coding processed_transcript MGP_C3HHeJ_T0031556.1 MGP_C3HHeJ_G0018736.1 mouse_genomes_project 11 96619385 96658229 + Fam117a protein_coding processed_transcript MGP_C3HHeJ_T0031557.1 MGP_C3HHeJ_G0018736.1 mouse_genomes_project 11 96619387 96645538 + Fam117a protein_coding processed_transcript MGP_C3HHeJ_T0031558.1 MGP_C3HHeJ_G0018736.1 mouse_genomes_project 11 96619416 96657804 + Fam117a protein_coding processed_transcript MGP_C3HHeJ_T0031559.1 MGP_C3HHeJ_G0018736.1 mouse_genomes_project 11 96658097 96660206 + Fam117a protein_coding processed_transcript MGP_C3HHeJ_T0003106.1 MGP_C3HHeJ_G0002885.1 mouse_genomes_project 11 54932434 55265976 + antisense antisense MGP_C3HHeJ_T0028501.1 MGP_C3HHeJ_G0017971.1 mouse_genomes_project 11 47789372 47791468 - MGP_C3HHeJ_P0028501 protein_coding protein_coding MGP_C3HHeJ_T0032428.1 MGP_C3HHeJ_G0018978.1 mouse_genomes_project 11 104086522 104103120 + MGP_C3HHeJ_P0032428 BC030867 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0032429.1 MGP_C3HHeJ_G0018978.1 mouse_genomes_project 11 104086522 104103120 + MGP_C3HHeJ_P0032429 BC030867 protein_coding protein_coding MGP_C3HHeJ_T0032430.1 MGP_C3HHeJ_G0018978.1 mouse_genomes_project 11 104093184 104098145 + BC030867 protein_coding processed_transcript MGP_C3HHeJ_T0032431.1 MGP_C3HHeJ_G0018978.1 mouse_genomes_project 11 104093188 104098143 + BC030867 protein_coding processed_transcript MGP_C3HHeJ_T0032432.1 MGP_C3HHeJ_G0018978.1 mouse_genomes_project 11 104099490 104103120 + BC030867 protein_coding processed_transcript MGP_C3HHeJ_T0029518.1 MGP_C3HHeJ_G0018241.1 mouse_genomes_project 11 66956013 66979850 + MGP_C3HHeJ_P0029518 Myh4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0098001.1 MGP_C3HHeJ_G0036213.1 mouse_genomes_project 11 99737868 99737975 - n-R5s73 rRNA rRNA MGP_C3HHeJ_T0027497.1 MGP_C3HHeJ_G0017722.1 mouse_genomes_project 11 828193 868578 - MGP_C3HHeJ_P0027497 4930556J24Rik protein_coding protein_coding MGP_C3HHeJ_T0098760.1 MGP_C3HHeJ_G0036954.1 mouse_genomes_project 11 20378473 20378577 + Gm24917 snRNA snRNA MGP_C3HHeJ_T0031770.1 MGP_C3HHeJ_G0018792.1 mouse_genomes_project 11 99126891 99138526 + MGP_C3HHeJ_P0031770 Psmb3 protein_coding protein_coding MGP_C3HHeJ_T0031771.1 MGP_C3HHeJ_G0018792.1 mouse_genomes_project 11 99126926 99131557 + Psmb3 protein_coding retained_intron MGP_C3HHeJ_T0031772.1 MGP_C3HHeJ_G0018792.1 mouse_genomes_project 11 99137091 99138526 + Psmb3 protein_coding retained_intron MGP_C3HHeJ_T0098761.1 MGP_C3HHeJ_G0036955.1 mouse_genomes_project 11 21020404 21020511 - Gm22753 snRNA snRNA MGP_C3HHeJ_T0012413.1 MGP_C3HHeJ_G0010517.1 mouse_genomes_project 11 20261110 20262537 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012643.1 MGP_C3HHeJ_G0010747.1 mouse_genomes_project 11 114375418 114376197 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012442.1 MGP_C3HHeJ_G0010546.1 mouse_genomes_project 11 30729745 30730703 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027981.1 MGP_C3HHeJ_G0017837.1 mouse_genomes_project 11 20487027 20490309 + MGP_C3HHeJ_P0027981 Zrsr1 protein_coding protein_coding MGP_C3HHeJ_T0029455.1 MGP_C3HHeJ_G0018222.1 mouse_genomes_project 11 63504805 63545289 - MGP_C3HHeJ_P0029455 Hs3st3b1 protein_coding protein_coding MGP_C3HHeJ_T0098806.1 MGP_C3HHeJ_G0037000.1 mouse_genomes_project 11 88486844 88486944 - Gm25968 snRNA snRNA MGP_C3HHeJ_T0027876.1 MGP_C3HHeJ_G0017807.1 mouse_genomes_project 11 14273881 14276955 + MGP_C3HHeJ_P0027876 Fbxo48 protein_coding protein_coding MGP_C3HHeJ_T0027877.1 MGP_C3HHeJ_G0017807.1 mouse_genomes_project 11 14273916 14277280 + MGP_C3HHeJ_P0027877 Fbxo48 protein_coding protein_coding MGP_C3HHeJ_T0012401.1 MGP_C3HHeJ_G0010505.1 mouse_genomes_project 11 18294209 18294416 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0033158.1 MGP_C3HHeJ_G0019135.1 mouse_genomes_project 11 117985532 117998798 + MGP_C3HHeJ_P0033158 Kctd2 protein_coding protein_coding MGP_C3HHeJ_T0033159.1 MGP_C3HHeJ_G0019135.1 mouse_genomes_project 11 117985889 117997009 + MGP_C3HHeJ_P0033159 Kctd2 protein_coding protein_coding MGP_C3HHeJ_T0033160.1 MGP_C3HHeJ_G0019135.1 mouse_genomes_project 11 117985921 117995776 + MGP_C3HHeJ_P0033160 Kctd2 protein_coding protein_coding MGP_C3HHeJ_T0033161.1 MGP_C3HHeJ_G0019135.1 mouse_genomes_project 11 117986051 117988165 + Kctd2 protein_coding retained_intron MGP_C3HHeJ_T0033162.1 MGP_C3HHeJ_G0019135.1 mouse_genomes_project 11 117995087 117995936 + Kctd2 protein_coding processed_transcript MGP_C3HHeJ_T0003058.1 MGP_C3HHeJ_G0002843.1 mouse_genomes_project 11 14130559 14145834 - Egfros antisense antisense MGP_C3HHeJ_T0101349.1 MGP_C3HHeJ_G0039421.1 mouse_genomes_project 11 73442981 73447245 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101350.1 MGP_C3HHeJ_G0039421.1 mouse_genomes_project 11 73443183 73450694 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0032016.1 MGP_C3HHeJ_G0018872.1 mouse_genomes_project 11 101377279 101379045 + MGP_C3HHeJ_P0032016 Krtap4-9 protein_coding protein_coding MGP_C3HHeJ_T0032715.1 MGP_C3HHeJ_G0019035.1 mouse_genomes_project 11 107313836 107352091 + Mrc2 protein_coding processed_transcript MGP_C3HHeJ_T0032716.1 MGP_C3HHeJ_G0019035.1 mouse_genomes_project 11 107313839 107376234 + MGP_C3HHeJ_P0032716 Mrc2 protein_coding protein_coding MGP_C3HHeJ_T0032717.1 MGP_C3HHeJ_G0019035.1 mouse_genomes_project 11 107313861 107368946 + MGP_C3HHeJ_P0032717 Mrc2 protein_coding protein_coding MGP_C3HHeJ_T0032718.1 MGP_C3HHeJ_G0019035.1 mouse_genomes_project 11 107354249 107357497 + Mrc2 protein_coding processed_transcript MGP_C3HHeJ_T0032719.1 MGP_C3HHeJ_G0019035.1 mouse_genomes_project 11 107365899 107368212 + Mrc2 protein_coding retained_intron MGP_C3HHeJ_T0031866.1 MGP_C3HHeJ_G0018815.1 mouse_genomes_project 11 99916433 99917717 - MGP_C3HHeJ_P0031866 Mien1 protein_coding protein_coding MGP_C3HHeJ_T0101655.1 MGP_C3HHeJ_G0039621.1 mouse_genomes_project 11 96038385 96039130 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0030284.1 MGP_C3HHeJ_G0018410.1 mouse_genomes_project 11 73231806 73257669 + MGP_C3HHeJ_P0030284 Shpk protein_coding protein_coding MGP_C3HHeJ_T0030285.1 MGP_C3HHeJ_G0018410.1 mouse_genomes_project 11 73231806 73257660 + MGP_C3HHeJ_P0030285 Shpk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003275.1 MGP_C3HHeJ_G0003021.1 mouse_genomes_project 11 118529816 118530944 + Recql5os1 antisense antisense MGP_C3HHeJ_T0028922.1 MGP_C3HHeJ_G0018076.1 mouse_genomes_project 11 54229400 54244734 + MGP_C3HHeJ_P0028922 Gm2a protein_coding protein_coding MGP_C3HHeJ_T0028864.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53400147 53468541 + MGP_C3HHeJ_P0028864 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028865.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53400164 53421958 + MGP_C3HHeJ_P0028865 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028866.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53400344 53471775 + MGP_C3HHeJ_P0028866 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028867.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53400344 53468545 + MGP_C3HHeJ_P0028867 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028868.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53400427 53471780 + MGP_C3HHeJ_P0028868 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028869.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53409814 53421411 + MGP_C3HHeJ_P0028869 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028870.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53411160 53433443 + MGP_C3HHeJ_P0028870 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028871.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53411160 53435008 + MGP_C3HHeJ_P0028871 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028872.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53416370 53434786 + MGP_C3HHeJ_P0028872 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0028873.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53431212 53468545 + Acsl6 protein_coding processed_transcript MGP_C3HHeJ_T0028874.1 MGP_C3HHeJ_G0018065.1 mouse_genomes_project 11 53441624 53468534 + MGP_C3HHeJ_P0028874 Acsl6 protein_coding protein_coding MGP_C3HHeJ_T0029798.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69635801 69651073 + MGP_C3HHeJ_P0029798 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0029799.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69635801 69654884 + MGP_C3HHeJ_P0029799 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0029800.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69635873 69652812 + MGP_C3HHeJ_P0029800 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0029801.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69635895 69649173 + MGP_C3HHeJ_P0029801 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0029802.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69636328 69646902 + MGP_C3HHeJ_P0029802 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0029803.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69636423 69646886 + MGP_C3HHeJ_P0029803 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0029804.1 MGP_C3HHeJ_G0018306.1 mouse_genomes_project 11 69646269 69650537 + MGP_C3HHeJ_P0029804 Zbtb4 protein_coding protein_coding MGP_C3HHeJ_T0012456.1 MGP_C3HHeJ_G0010560.1 mouse_genomes_project 11 38930888 38931234 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0028900.1 MGP_C3HHeJ_G0018071.1 mouse_genomes_project 11 53980484 53984607 + MGP_C3HHeJ_P0028900 Hint1 protein_coding protein_coding MGP_C3HHeJ_T0028901.1 MGP_C3HHeJ_G0018071.1 mouse_genomes_project 11 53980582 53984413 + MGP_C3HHeJ_P0028901 Hint1 protein_coding protein_coding MGP_C3HHeJ_T0032756.1 MGP_C3HHeJ_G0019046.1 mouse_genomes_project 11 108199817 108200126 + MGP_C3HHeJ_P0032756 Gm10840 protein_coding protein_coding MGP_C3HHeJ_T0029793.1 MGP_C3HHeJ_G0018304.1 mouse_genomes_project 11 69602653 69628054 - MGP_C3HHeJ_P0029793 Polr2a protein_coding protein_coding MGP_C3HHeJ_T0029794.1 MGP_C3HHeJ_G0018304.1 mouse_genomes_project 11 69603066 69627640 - MGP_C3HHeJ_P0029794 Polr2a protein_coding protein_coding MGP_C3HHeJ_T0029795.1 MGP_C3HHeJ_G0018304.1 mouse_genomes_project 11 69604867 69606005 - Polr2a protein_coding processed_transcript MGP_C3HHeJ_T0029796.1 MGP_C3HHeJ_G0018304.1 mouse_genomes_project 11 69610280 69611227 - Polr2a protein_coding processed_transcript MGP_C3HHeJ_T0012617.1 MGP_C3HHeJ_G0010721.1 mouse_genomes_project 11 103767274 103767673 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0030273.1 MGP_C3HHeJ_G0018407.1 mouse_genomes_project 11 73205200 73206719 - MGP_C3HHeJ_P0030273 Emc6 protein_coding protein_coding MGP_C3HHeJ_T0030274.1 MGP_C3HHeJ_G0018407.1 mouse_genomes_project 11 73206017 73206684 - MGP_C3HHeJ_P0030274 Emc6 protein_coding protein_coding MGP_C3HHeJ_T0028712.1 MGP_C3HHeJ_G0018026.1 mouse_genomes_project 11 50602774 50669821 - MGP_C3HHeJ_P0028712 Sec24a protein_coding protein_coding MGP_C3HHeJ_T0028713.1 MGP_C3HHeJ_G0018026.1 mouse_genomes_project 11 50605145 50669414 - MGP_C3HHeJ_P0028713 Sec24a protein_coding protein_coding MGP_C3HHeJ_T0028714.1 MGP_C3HHeJ_G0018026.1 mouse_genomes_project 11 50633220 50669641 - MGP_C3HHeJ_P0028714 Sec24a protein_coding protein_coding MGP_C3HHeJ_T0028715.1 MGP_C3HHeJ_G0018026.1 mouse_genomes_project 11 50633220 50669634 - MGP_C3HHeJ_P0028715 Sec24a protein_coding protein_coding MGP_C3HHeJ_T0028716.1 MGP_C3HHeJ_G0018026.1 mouse_genomes_project 11 50641188 50670364 - Sec24a protein_coding retained_intron MGP_C3HHeJ_T0028717.1 MGP_C3HHeJ_G0018026.1 mouse_genomes_project 11 50653820 50676735 - Sec24a protein_coding retained_intron MGP_C3HHeJ_T0029053.1 MGP_C3HHeJ_G0018137.1 mouse_genomes_project 11 58283948 58286094 + MGP_C3HHeJ_P0029053 Hist3h2a protein_coding protein_coding MGP_C3HHeJ_T0031338.1 MGP_C3HHeJ_G0018681.1 mouse_genomes_project 11 89826888 89858645 - MGP_C3HHeJ_P0031338 Scpep1 protein_coding protein_coding MGP_C3HHeJ_T0098764.1 MGP_C3HHeJ_G0036958.1 mouse_genomes_project 11 23957273 23957434 - Gm22868 snRNA snRNA MGP_C3HHeJ_T0029541.1 MGP_C3HHeJ_G0018248.1 mouse_genomes_project 11 67542628 67545249 + Dhrs7c protein_coding processed_transcript MGP_C3HHeJ_T0029542.1 MGP_C3HHeJ_G0018248.1 mouse_genomes_project 11 67542712 67545617 + Dhrs7c protein_coding processed_transcript MGP_C3HHeJ_T0029543.1 MGP_C3HHeJ_G0018248.1 mouse_genomes_project 11 67542717 67545778 + Dhrs7c protein_coding processed_transcript MGP_C3HHeJ_T0029544.1 MGP_C3HHeJ_G0018248.1 mouse_genomes_project 11 67542718 67543508 + Dhrs7c protein_coding processed_transcript MGP_C3HHeJ_T0029545.1 MGP_C3HHeJ_G0018248.1 mouse_genomes_project 11 67542728 67560449 + MGP_C3HHeJ_P0029545 Dhrs7c protein_coding protein_coding MGP_C3HHeJ_T0029087.1 MGP_C3HHeJ_G0018147.1 mouse_genomes_project 11 58590105 58632241 - MGP_C3HHeJ_P0029087 Wnt3a protein_coding protein_coding MGP_C3HHeJ_T0030310.1 MGP_C3HHeJ_G0018420.1 mouse_genomes_project 11 73525323 73531516 - MGP_C3HHeJ_P0030310 Olfr381 protein_coding protein_coding MGP_C3HHeJ_T0030311.1 MGP_C3HHeJ_G0018420.1 mouse_genomes_project 11 73525323 73526450 - MGP_C3HHeJ_P0030311 Olfr381 protein_coding protein_coding MGP_C3HHeJ_T0012445.1 MGP_C3HHeJ_G0010549.1 mouse_genomes_project 11 31375693 31376081 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0031047.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84589440 84670593 + MGP_C3HHeJ_P0031047 Synrg protein_coding protein_coding MGP_C3HHeJ_T0031048.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84589440 84666964 + MGP_C3HHeJ_P0031048 Synrg protein_coding protein_coding MGP_C3HHeJ_T0031049.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84589488 84666938 + MGP_C3HHeJ_P0031049 Synrg protein_coding protein_coding MGP_C3HHeJ_T0031050.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84589488 84666938 + MGP_C3HHeJ_P0031050 Synrg protein_coding protein_coding MGP_C3HHeJ_T0031051.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84606366 84614708 + Synrg protein_coding processed_transcript MGP_C3HHeJ_T0031052.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84607207 84615768 + MGP_C3HHeJ_P0031052 Synrg protein_coding protein_coding MGP_C3HHeJ_T0031053.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84614707 84616184 + Synrg protein_coding retained_intron MGP_C3HHeJ_T0031054.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84644175 84667421 + Synrg protein_coding retained_intron MGP_C3HHeJ_T0031055.1 MGP_C3HHeJ_G0018618.1 mouse_genomes_project 11 84652717 84666020 + Synrg protein_coding retained_intron MGP_C3HHeJ_T0027512.1 MGP_C3HHeJ_G0017726.1 mouse_genomes_project 11 955520 967997 + MGP_C3HHeJ_P0027512 Sec14l3 protein_coding protein_coding MGP_C3HHeJ_T0027513.1 MGP_C3HHeJ_G0017726.1 mouse_genomes_project 11 955570 959845 + Sec14l3 protein_coding retained_intron MGP_C3HHeJ_T0027514.1 MGP_C3HHeJ_G0017726.1 mouse_genomes_project 11 955631 966574 + Sec14l3 protein_coding processed_transcript MGP_C3HHeJ_T0027515.1 MGP_C3HHeJ_G0017726.1 mouse_genomes_project 11 955631 966574 + Sec14l3 protein_coding processed_transcript MGP_C3HHeJ_T0027516.1 MGP_C3HHeJ_G0017726.1 mouse_genomes_project 11 961805 967010 + Sec14l3 protein_coding processed_transcript MGP_C3HHeJ_T0033811.1 MGP_C3HHeJ_G0019260.1 mouse_genomes_project 11 123418199 123421784 - MGP_C3HHeJ_P0033811 Arhgdia protein_coding protein_coding MGP_C3HHeJ_T0033812.1 MGP_C3HHeJ_G0019260.1 mouse_genomes_project 11 123418204 123421476 - MGP_C3HHeJ_P0033812 Arhgdia protein_coding protein_coding MGP_C3HHeJ_T0028271.1 MGP_C3HHeJ_G0017903.1 mouse_genomes_project 11 31980920 31991533 + MGP_C3HHeJ_P0028271 Kcnmb1 protein_coding protein_coding MGP_C3HHeJ_T0012432.1 MGP_C3HHeJ_G0010536.1 mouse_genomes_project 11 27764695 27765481 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029152.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59492442 59588544 + Rai1 protein_coding processed_transcript MGP_C3HHeJ_T0029153.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59492442 59588542 + MGP_C3HHeJ_P0029153 Rai1 protein_coding protein_coding MGP_C3HHeJ_T0029154.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59492606 59573604 + MGP_C3HHeJ_P0029154 Rai1 protein_coding protein_coding MGP_C3HHeJ_T0029155.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59528512 59588542 + MGP_C3HHeJ_P0029155 Rai1 protein_coding protein_coding MGP_C3HHeJ_T0029156.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59528514 59580206 + MGP_C3HHeJ_P0029156 Rai1 protein_coding protein_coding MGP_C3HHeJ_T0029157.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59528689 59529682 + Rai1 protein_coding processed_transcript MGP_C3HHeJ_T0029158.1 MGP_C3HHeJ_G0018165.1 mouse_genomes_project 11 59564031 59588545 + MGP_C3HHeJ_P0029158 Rai1 protein_coding protein_coding MGP_C3HHeJ_T0030496.1 MGP_C3HHeJ_G0018477.1 mouse_genomes_project 11 76004481 76112606 - MGP_C3HHeJ_P0030496 Rph3al protein_coding protein_coding MGP_C3HHeJ_T0030497.1 MGP_C3HHeJ_G0018477.1 mouse_genomes_project 11 76005619 76085150 - MGP_C3HHeJ_P0030497 Rph3al protein_coding protein_coding MGP_C3HHeJ_T0030498.1 MGP_C3HHeJ_G0018477.1 mouse_genomes_project 11 76073809 76100760 - MGP_C3HHeJ_P0030498 Rph3al protein_coding protein_coding MGP_C3HHeJ_T0030499.1 MGP_C3HHeJ_G0018477.1 mouse_genomes_project 11 76074825 76112565 - MGP_C3HHeJ_P0030499 Rph3al protein_coding protein_coding MGP_C3HHeJ_T0030500.1 MGP_C3HHeJ_G0018477.1 mouse_genomes_project 11 76080658 76113297 - MGP_C3HHeJ_P0030500 Rph3al protein_coding protein_coding MGP_C3HHeJ_T0029010.1 MGP_C3HHeJ_G0018108.1 mouse_genomes_project 11 57763745 57766525 - MGP_C3HHeJ_P0029010 protein_coding protein_coding MGP_C3HHeJ_T0029011.1 MGP_C3HHeJ_G0018108.1 mouse_genomes_project 11 57764382 57766539 - MGP_C3HHeJ_P0029011 protein_coding protein_coding MGP_C3HHeJ_T0031442.1 MGP_C3HHeJ_G0018709.1 mouse_genomes_project 11 95518450 95531540 + MGP_C3HHeJ_P0031442 Ankrd40 protein_coding protein_coding MGP_C3HHeJ_T0031443.1 MGP_C3HHeJ_G0018709.1 mouse_genomes_project 11 95518450 95533877 + MGP_C3HHeJ_P0031443 Ankrd40 protein_coding protein_coding MGP_C3HHeJ_T0031444.1 MGP_C3HHeJ_G0018709.1 mouse_genomes_project 11 95530324 95532179 + Ankrd40 protein_coding retained_intron MGP_C3HHeJ_T0012635.1 MGP_C3HHeJ_G0010739.1 mouse_genomes_project 11 109297480 109298017 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0027557.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1387367 1503661 - MGP_C3HHeJ_P0027557 Mtmr3 protein_coding protein_coding MGP_C3HHeJ_T0027558.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1387374 1394866 - Mtmr3 protein_coding processed_transcript MGP_C3HHeJ_T0027559.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1387374 1456225 - MGP_C3HHeJ_P0027559 Mtmr3 protein_coding protein_coding MGP_C3HHeJ_T0027560.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1387389 1437061 - MGP_C3HHeJ_P0027560 Mtmr3 protein_coding protein_coding MGP_C3HHeJ_T0027561.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1389058 1503709 - MGP_C3HHeJ_P0027561 Mtmr3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0027562.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1389251 1437061 - MGP_C3HHeJ_P0027562 Mtmr3 protein_coding protein_coding MGP_C3HHeJ_T0027563.1 MGP_C3HHeJ_G0017737.1 mouse_genomes_project 11 1398306 1399818 - Mtmr3 protein_coding processed_transcript MGP_C3HHeJ_T0033026.1 MGP_C3HHeJ_G0019104.1 mouse_genomes_project 11 116130193 116143609 - MGP_C3HHeJ_P0033026 Cpsf4l protein_coding protein_coding MGP_C3HHeJ_T0033027.1 MGP_C3HHeJ_G0019104.1 mouse_genomes_project 11 116130193 116143115 - MGP_C3HHeJ_P0033027 Cpsf4l protein_coding protein_coding MGP_C3HHeJ_T0033028.1 MGP_C3HHeJ_G0019104.1 mouse_genomes_project 11 116130193 116143109 - MGP_C3HHeJ_P0033028 Cpsf4l protein_coding protein_coding MGP_C3HHeJ_T0033029.1 MGP_C3HHeJ_G0019104.1 mouse_genomes_project 11 116130193 116142556 - MGP_C3HHeJ_P0033029 Cpsf4l protein_coding protein_coding MGP_C3HHeJ_T0033030.1 MGP_C3HHeJ_G0019104.1 mouse_genomes_project 11 116134746 116143113 - Cpsf4l protein_coding retained_intron MGP_C3HHeJ_T0029266.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60732717 60777351 - MGP_C3HHeJ_P0029266 Aldh3a2 protein_coding protein_coding MGP_C3HHeJ_T0029267.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60754193 60777172 - MGP_C3HHeJ_P0029267 Aldh3a2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0029268.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60754202 60777351 - MGP_C3HHeJ_P0029268 Aldh3a2 protein_coding protein_coding MGP_C3HHeJ_T0029269.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60756872 60777351 - MGP_C3HHeJ_P0029269 Aldh3a2 protein_coding protein_coding MGP_C3HHeJ_T0029270.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60758417 60772501 - Aldh3a2 protein_coding processed_transcript MGP_C3HHeJ_T0029271.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60766185 60777630 - Aldh3a2 protein_coding processed_transcript MGP_C3HHeJ_T0029272.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60774335 60777293 - Aldh3a2 protein_coding processed_transcript MGP_C3HHeJ_T0029273.1 MGP_C3HHeJ_G0018188.1 mouse_genomes_project 11 60775389 60777607 - Aldh3a2 protein_coding processed_transcript MGP_C3HHeJ_T0033277.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118490885 118493427 - Recql5 protein_coding retained_intron MGP_C3HHeJ_T0033278.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118490885 118538285 - MGP_C3HHeJ_P0033278 Recql5 protein_coding protein_coding MGP_C3HHeJ_T0033279.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118490885 118538285 - MGP_C3HHeJ_P0033279 Recql5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033280.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118493705 118532193 - MGP_C3HHeJ_P0033280 Recql5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033281.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118494555 118538285 - Recql5 protein_coding retained_intron MGP_C3HHeJ_T0033282.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118495099 118505542 - Recql5 protein_coding processed_transcript MGP_C3HHeJ_T0033287.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118513953 118538285 - MGP_C3HHeJ_P0033287 Recql5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0033288.1 MGP_C3HHeJ_G0019153.1 mouse_genomes_project 11 118530232 118532361 - Recql5 protein_coding retained_intron MGP_C3HHeJ_T0028777.1 MGP_C3HHeJ_G0018041.1 mouse_genomes_project 11 52450693 52451683 - MGP_C3HHeJ_P0028777 Leap2 protein_coding protein_coding MGP_C3HHeJ_T0033088.1 MGP_C3HHeJ_G0019120.1 mouse_genomes_project 11 117641234 117699510 + Rab37 protein_coding retained_intron MGP_C3HHeJ_T0033089.1 MGP_C3HHeJ_G0019120.1 mouse_genomes_project 11 117641234 117714490 + MGP_C3HHeJ_P0033089 Rab37 protein_coding protein_coding MGP_C3HHeJ_T0033098.1 MGP_C3HHeJ_G0019120.1 mouse_genomes_project 11 117706415 117714490 + MGP_C3HHeJ_P0033098 Rab37 protein_coding protein_coding MGP_C3HHeJ_T0033099.1 MGP_C3HHeJ_G0019120.1 mouse_genomes_project 11 117706461 117709805 + Rab37 protein_coding retained_intron MGP_C3HHeJ_T0017032.1 MGP_C3HHeJ_G0014968.1 mouse_genomes_project 11 102041028 102043015 - Gm20394 processed_transcript processed_transcript MGP_C3HHeJ_T0031937.1 MGP_C3HHeJ_G0018831.1 mouse_genomes_project 11 100380207 100409374 + MGP_C3HHeJ_P0031937 Wipf2 protein_coding protein_coding MGP_C3HHeJ_T0031938.1 MGP_C3HHeJ_G0018831.1 mouse_genomes_project 11 100380207 100423228 + MGP_C3HHeJ_P0031938 Wipf2 protein_coding protein_coding MGP_C3HHeJ_T0031939.1 MGP_C3HHeJ_G0018831.1 mouse_genomes_project 11 100380655 100409915 + Wipf2 protein_coding retained_intron MGP_C3HHeJ_T0031940.1 MGP_C3HHeJ_G0018831.1 mouse_genomes_project 11 100408247 100409172 + Wipf2 protein_coding retained_intron MGP_C3HHeJ_T0028599.1 MGP_C3HHeJ_G0017998.1 mouse_genomes_project 11 49086220 49120158 - MGP_C3HHeJ_P0028599 Canx protein_coding protein_coding MGP_C3HHeJ_T0028600.1 MGP_C3HHeJ_G0017998.1 mouse_genomes_project 11 49086726 49120158 - MGP_C3HHeJ_P0028600 Canx protein_coding protein_coding MGP_C3HHeJ_T0028601.1 MGP_C3HHeJ_G0017998.1 mouse_genomes_project 11 49088458 49091638 - Canx protein_coding processed_transcript MGP_C3HHeJ_T0028602.1 MGP_C3HHeJ_G0017998.1 mouse_genomes_project 11 49089623 49090579 - Canx protein_coding processed_transcript MGP_C3HHeJ_T0028603.1 MGP_C3HHeJ_G0017998.1 mouse_genomes_project 11 49091097 49093250 - Canx protein_coding processed_transcript MGP_C3HHeJ_T0009632.1 MGP_C3HHeJ_G0007765.1 mouse_genomes_project 11 78370778 78370844 + Mir144 miRNA miRNA MGP_C3HHeJ_T0006205.1 MGP_C3HHeJ_G0005175.1 mouse_genomes_project 11 77748874 77750430 + 2210008F06Rik lincRNA lincRNA MGP_C3HHeJ_T0032462.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104244840 104253186 + MGP_C3HHeJ_P0032462 Rundc3a protein_coding protein_coding MGP_C3HHeJ_T0032463.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104244840 104253186 + MGP_C3HHeJ_P0032463 Rundc3a protein_coding protein_coding MGP_C3HHeJ_T0032464.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104244840 104253186 + MGP_C3HHeJ_P0032464 Rundc3a protein_coding protein_coding MGP_C3HHeJ_T0032465.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104244840 104253987 + MGP_C3HHeJ_P0032465 Rundc3a protein_coding protein_coding MGP_C3HHeJ_T0032466.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104249294 104253987 + Rundc3a protein_coding retained_intron MGP_C3HHeJ_T0032467.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104249549 104251211 + Rundc3a protein_coding processed_transcript MGP_C3HHeJ_T0032468.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104250598 104253661 + Rundc3a protein_coding processed_transcript MGP_C3HHeJ_T0032469.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104250995 104253658 + Rundc3a protein_coding processed_transcript MGP_C3HHeJ_T0032470.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104251187 104253584 + Rundc3a protein_coding processed_transcript MGP_C3HHeJ_T0032471.1 MGP_C3HHeJ_G0018984.1 mouse_genomes_project 11 104251289 104252217 + Rundc3a protein_coding processed_transcript MGP_C3HHeJ_T0029628.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68824227 68834019 + Ctc1 protein_coding retained_intron MGP_C3HHeJ_T0029629.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68824387 68846054 + MGP_C3HHeJ_P0029629 Ctc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029630.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68824398 68846051 + MGP_C3HHeJ_P0029630 Ctc1 protein_coding protein_coding MGP_C3HHeJ_T0029631.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68824434 68846056 + MGP_C3HHeJ_P0029631 Ctc1 protein_coding protein_coding MGP_C3HHeJ_T0029632.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68824435 68831623 + Ctc1 protein_coding processed_transcript MGP_C3HHeJ_T0029633.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68836536 68838061 + Ctc1 protein_coding retained_intron MGP_C3HHeJ_T0029634.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68837922 68840418 + Ctc1 protein_coding processed_transcript MGP_C3HHeJ_T0029635.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68840098 68844529 + Ctc1 protein_coding processed_transcript MGP_C3HHeJ_T0029636.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68843455 68845402 + Ctc1 protein_coding retained_intron MGP_C3HHeJ_T0029637.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68844101 68845387 + Ctc1 protein_coding retained_intron MGP_C3HHeJ_T0029638.1 MGP_C3HHeJ_G0018266.1 mouse_genomes_project 11 68844459 68845761 + Ctc1 protein_coding retained_intron MGP_C3HHeJ_T0029797.1 MGP_C3HHeJ_G0018305.1 mouse_genomes_project 11 69629306 69631385 - MGP_C3HHeJ_P0029797 Slc35g3 protein_coding protein_coding MGP_C3HHeJ_T0030520.1 MGP_C3HHeJ_G0018482.1 mouse_genomes_project 11 76383532 76420960 + Fam57a protein_coding processed_transcript MGP_C3HHeJ_T0030521.1 MGP_C3HHeJ_G0018482.1 mouse_genomes_project 11 76406858 76407820 + Fam57a protein_coding retained_intron MGP_C3HHeJ_T0030522.1 MGP_C3HHeJ_G0018482.1 mouse_genomes_project 11 76406895 76415415 + MGP_C3HHeJ_P0030522 Fam57a protein_coding protein_coding MGP_C3HHeJ_T0030523.1 MGP_C3HHeJ_G0018482.1 mouse_genomes_project 11 76406928 76415563 + MGP_C3HHeJ_P0030523 Fam57a protein_coding protein_coding MGP_C3HHeJ_T0016945.1 MGP_C3HHeJ_G0014917.1 mouse_genomes_project 11 20348256 20351415 + Gm20456 processed_transcript processed_transcript MGP_C3HHeJ_T0009664.1 MGP_C3HHeJ_G0007797.1 mouse_genomes_project 11 103172780 103172847 - Mir6929 miRNA miRNA MGP_C3HHeJ_T0028287.1 MGP_C3HHeJ_G0017908.1 mouse_genomes_project 11 32843712 32874434 - MGP_C3HHeJ_P0028287 Spdl1 protein_coding protein_coding MGP_C3HHeJ_T0028288.1 MGP_C3HHeJ_G0017908.1 mouse_genomes_project 11 32859723 32861646 - Spdl1 protein_coding retained_intron MGP_C3HHeJ_T0028289.1 MGP_C3HHeJ_G0017908.1 mouse_genomes_project 11 32870089 32874385 - Spdl1 protein_coding retained_intron MGP_C3HHeJ_T0003286.1 MGP_C3HHeJ_G0003031.1 mouse_genomes_project 11 121197056 121207893 - Gm11747 antisense antisense MGP_C3HHeJ_T0098801.1 MGP_C3HHeJ_G0036995.1 mouse_genomes_project 11 87168423 87168529 - Gm26439 snRNA snRNA MGP_C3HHeJ_T0029058.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58331353 58347349 - MGP_C3HHeJ_P0029058 Obscn protein_coding unknown_likely_coding MGP_C3HHeJ_T0029059.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58331353 58347449 - MGP_C3HHeJ_P0029059 Obscn protein_coding unknown_likely_coding MGP_C3HHeJ_T0029060.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58331357 58478882 - MGP_C3HHeJ_P0029060 Obscn protein_coding protein_coding MGP_C3HHeJ_T0029061.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58331360 58371737 - MGP_C3HHeJ_P0029061 Obscn protein_coding protein_coding MGP_C3HHeJ_T0029062.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58348630 58478885 - MGP_C3HHeJ_P0029062 Obscn protein_coding protein_coding MGP_C3HHeJ_T0029063.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58348630 58478748 - MGP_C3HHeJ_P0029063 Obscn protein_coding protein_coding MGP_C3HHeJ_T0029064.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58348630 58371710 - MGP_C3HHeJ_P0029064 Obscn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029065.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58348631 58366167 - MGP_C3HHeJ_P0029065 Obscn protein_coding protein_coding MGP_C3HHeJ_T0029066.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58349145 58478721 - MGP_C3HHeJ_P0029066 Obscn protein_coding unknown_likely_coding MGP_C3HHeJ_T0029067.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58349145 58478721 - MGP_C3HHeJ_P0029067 Obscn protein_coding unknown_likely_coding MGP_C3HHeJ_T0029068.1 MGP_C3HHeJ_G0018140.1 mouse_genomes_project 11 58411226 58417828 - MGP_C3HHeJ_P0029068 Obscn protein_coding protein_coding MGP_C3HHeJ_T0032445.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104150607 104165782 - MGP_C3HHeJ_P0032445 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032446.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104150608 104165793 - MGP_C3HHeJ_P0032446 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032447.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152060 104163469 - MGP_C3HHeJ_P0032447 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032448.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152060 104167608 - MGP_C3HHeJ_P0032448 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032449.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152060 104164640 - MGP_C3HHeJ_P0032449 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032450.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152060 104163493 - MGP_C3HHeJ_P0032450 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032451.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152129 104164092 - MGP_C3HHeJ_P0032451 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032452.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152432 104164440 - MGP_C3HHeJ_P0032452 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032453.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104152618 104168542 - MGP_C3HHeJ_P0032453 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032454.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104155831 104156700 - Ubtf protein_coding retained_intron MGP_C3HHeJ_T0032455.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104158546 104163464 - MGP_C3HHeJ_P0032455 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0032456.1 MGP_C3HHeJ_G0018982.1 mouse_genomes_project 11 104160400 104163494 - MGP_C3HHeJ_P0032456 Ubtf protein_coding protein_coding MGP_C3HHeJ_T0033003.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115647396 115983047 - MGP_C3HHeJ_P0033003 Slc39a11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0033004.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115647400 115983030 - MGP_C3HHeJ_P0033004 Slc39a11 protein_coding protein_coding MGP_C3HHeJ_T0033005.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115647400 115983039 - MGP_C3HHeJ_P0033005 Slc39a11 protein_coding protein_coding MGP_C3HHeJ_T0033006.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115780477 116073225 - MGP_C3HHeJ_P0033006 Slc39a11 protein_coding protein_coding MGP_C3HHeJ_T0033007.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115875868 115983050 - MGP_C3HHeJ_P0033007 Slc39a11 protein_coding protein_coding MGP_C3HHeJ_T0033008.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115939627 116073233 - MGP_C3HHeJ_P0033008 Slc39a11 protein_coding protein_coding MGP_C3HHeJ_T0033009.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115975803 116073224 - MGP_C3HHeJ_P0033009 Slc39a11 protein_coding protein_coding MGP_C3HHeJ_T0033010.1 MGP_C3HHeJ_G0019100.1 mouse_genomes_project 11 115996824 116073224 - Slc39a11 protein_coding processed_transcript MGP_C3HHeJ_T0031863.1 MGP_C3HHeJ_G0018814.1 mouse_genomes_project 11 99891340 99916442 + MGP_C3HHeJ_P0031863 Erbb2 protein_coding protein_coding MGP_C3HHeJ_T0031864.1 MGP_C3HHeJ_G0018814.1 mouse_genomes_project 11 99891363 99915802 + Erbb2 protein_coding processed_transcript MGP_C3HHeJ_T0031865.1 MGP_C3HHeJ_G0018814.1 mouse_genomes_project 11 99905793 99906286 + Erbb2 protein_coding processed_transcript MGP_C3HHeJ_T0033449.1 MGP_C3HHeJ_G0019186.1 mouse_genomes_project 11 119329746 119351255 - MGP_C3HHeJ_P0033449 St6galnac2 protein_coding protein_coding MGP_C3HHeJ_T0033450.1 MGP_C3HHeJ_G0019186.1 mouse_genomes_project 11 119331425 119335207 - St6galnac2 protein_coding processed_transcript MGP_C3HHeJ_T0033451.1 MGP_C3HHeJ_G0019186.1 mouse_genomes_project 11 119333019 119336819 - St6galnac2 protein_coding processed_transcript MGP_C3HHeJ_T0033452.1 MGP_C3HHeJ_G0019186.1 mouse_genomes_project 11 119337216 119340349 - St6galnac2 protein_coding processed_transcript MGP_C3HHeJ_T0033453.1 MGP_C3HHeJ_G0019186.1 mouse_genomes_project 11 119340448 119341450 - St6galnac2 protein_coding processed_transcript MGP_C3HHeJ_T0033454.1 MGP_C3HHeJ_G0019186.1 mouse_genomes_project 11 119345321 119350996 - St6galnac2 protein_coding processed_transcript MGP_C3HHeJ_T0031492.1 MGP_C3HHeJ_G0018718.1 mouse_genomes_project 11 95830320 95846500 + MGP_C3HHeJ_P0031492 Lrrc59 protein_coding protein_coding MGP_C3HHeJ_T0031493.1 MGP_C3HHeJ_G0018718.1 mouse_genomes_project 11 95830367 95835808 + Lrrc59 protein_coding retained_intron MGP_C3HHeJ_T0017064.1 MGP_C3HHeJ_G0014982.1 mouse_genomes_project 11 121229416 121232482 - Gm11748 processed_transcript processed_transcript MGP_C3HHeJ_T0031589.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97141544 97150057 + MGP_C3HHeJ_P0031589 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0031590.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97146599 97150057 + MGP_C3HHeJ_P0031590 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0031591.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97146613 97150057 + MGP_C3HHeJ_P0031591 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0031592.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97146965 97150057 + MGP_C3HHeJ_P0031592 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0031593.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97146967 97150057 + MGP_C3HHeJ_P0031593 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0031594.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97147539 97150057 + MGP_C3HHeJ_P0031594 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0031595.1 MGP_C3HHeJ_G0018746.1 mouse_genomes_project 11 97147916 97150057 + MGP_C3HHeJ_P0031595 Gngt2 protein_coding protein_coding MGP_C3HHeJ_T0012364.1 MGP_C3HHeJ_G0010468.1 mouse_genomes_project 11 3882275 3882589 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0029755.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502054 69507997 - MGP_C3HHeJ_P0029755 Mpdu1 protein_coding protein_coding MGP_C3HHeJ_T0029756.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502318 69507919 - MGP_C3HHeJ_P0029756 Mpdu1 protein_coding protein_coding MGP_C3HHeJ_T0029757.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502384 69507942 - MGP_C3HHeJ_P0029757 Mpdu1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029758.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502486 69503638 - Mpdu1 protein_coding retained_intron MGP_C3HHeJ_T0029759.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502511 69507942 - MGP_C3HHeJ_P0029759 Mpdu1 protein_coding protein_coding MGP_C3HHeJ_T0029760.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502519 69507873 - MGP_C3HHeJ_P0029760 Mpdu1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0029761.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69502570 69503611 - Mpdu1 protein_coding retained_intron MGP_C3HHeJ_T0029762.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69503090 69507859 - Mpdu1 protein_coding retained_intron MGP_C3HHeJ_T0029763.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69503704 69507915 - Mpdu1 protein_coding retained_intron MGP_C3HHeJ_T0029764.1 MGP_C3HHeJ_G0018297.1 mouse_genomes_project 11 69503833 69504763 - Mpdu1 protein_coding retained_intron MGP_C3HHeJ_T0028664.1 MGP_C3HHeJ_G0018016.1 mouse_genomes_project 11 50144910 50154211 - MGP_C3HHeJ_P0028664 BC049762 protein_coding protein_coding MGP_C3HHeJ_T0028665.1 MGP_C3HHeJ_G0018016.1 mouse_genomes_project 11 50144910 50154306 - MGP_C3HHeJ_P0028665 BC049762 protein_coding protein_coding MGP_C3HHeJ_T0030089.1 MGP_C3HHeJ_G0018366.1 mouse_genomes_project 11 70619257 70634450 - MGP_C3HHeJ_P0030089 Inca1 protein_coding protein_coding MGP_C3HHeJ_T0030090.1 MGP_C3HHeJ_G0018366.1 mouse_genomes_project 11 70619257 70634450 - MGP_C3HHeJ_P0030090 Inca1 protein_coding protein_coding MGP_C3HHeJ_T0030091.1 MGP_C3HHeJ_G0018366.1 mouse_genomes_project 11 70619257 70634450 - MGP_C3HHeJ_P0030091 Inca1 protein_coding protein_coding MGP_C3HHeJ_T0030092.1 MGP_C3HHeJ_G0018366.1 mouse_genomes_project 11 70619257 70634450 - MGP_C3HHeJ_P0030092 Inca1 protein_coding protein_coding MGP_C3HHeJ_T0030093.1 MGP_C3HHeJ_G0018366.1 mouse_genomes_project 11 70619265 70634404 - MGP_C3HHeJ_P0030093 Inca1 protein_coding protein_coding MGP_C3HHeJ_T0029074.1 MGP_C3HHeJ_G0018143.1 mouse_genomes_project 11 58526129 58534142 - MGP_C3HHeJ_P0029074 Guk1 protein_coding protein_coding MGP_C3HHeJ_T0029075.1 MGP_C3HHeJ_G0018143.1 mouse_genomes_project 11 58526301 58529985 - MGP_C3HHeJ_P0029075 Guk1 protein_coding protein_coding MGP_C3HHeJ_T0029076.1 MGP_C3HHeJ_G0018143.1 mouse_genomes_project 11 58526364 58527699 - Guk1 protein_coding retained_intron MGP_C3HHeJ_T0029077.1 MGP_C3HHeJ_G0018143.1 mouse_genomes_project 11 58526410 58527103 - Guk1 protein_coding retained_intron MGP_C3HHeJ_T0029078.1 MGP_C3HHeJ_G0018143.1 mouse_genomes_project 11 58528425 58534002 - Guk1 protein_coding retained_intron MGP_C3HHeJ_T0029079.1 MGP_C3HHeJ_G0018143.1 mouse_genomes_project 11 58529035 58534460 - MGP_C3HHeJ_P0029079 Guk1 protein_coding protein_coding MGP_C3HHeJ_T0030149.1 MGP_C3HHeJ_G0018375.1 mouse_genomes_project 11 70974306 70987898 - MGP_C3HHeJ_P0030149 Derl2 protein_coding protein_coding MGP_C3HHeJ_T0030150.1 MGP_C3HHeJ_G0018375.1 mouse_genomes_project 11 70974585 70987892 - MGP_C3HHeJ_P0030150 Derl2 protein_coding protein_coding MGP_C3HHeJ_T0030151.1 MGP_C3HHeJ_G0018375.1 mouse_genomes_project 11 70977494 70987925 - MGP_C3HHeJ_P0030151 Derl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030152.1 MGP_C3HHeJ_G0018375.1 mouse_genomes_project 11 70980815 70987899 - Derl2 protein_coding retained_intron MGP_C3HHeJ_T0030153.1 MGP_C3HHeJ_G0018375.1 mouse_genomes_project 11 70981774 70987931 - MGP_C3HHeJ_P0030153 Derl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030154.1 MGP_C3HHeJ_G0018375.1 mouse_genomes_project 11 70983218 70987868 - MGP_C3HHeJ_P0030154 Derl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006097.1 MGP_C3HHeJ_G0005083.1 mouse_genomes_project 11 11355248 11475371 - lincRNA lincRNA MGP_C3HHeJ_T0030819.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79597657 79613910 - MGP_C3HHeJ_P0030819 Wsb1 protein_coding protein_coding MGP_C3HHeJ_T0030820.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79597673 79601332 - Wsb1 protein_coding retained_intron MGP_C3HHeJ_T0030821.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79598561 79606966 - MGP_C3HHeJ_P0030821 Wsb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030822.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79598592 79601235 - Wsb1 protein_coding processed_transcript MGP_C3HHeJ_T0030823.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79601595 79613908 - MGP_C3HHeJ_P0030823 Wsb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030824.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79601707 79613709 - MGP_C3HHeJ_P0030824 Wsb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030825.1 MGP_C3HHeJ_G0018548.1 mouse_genomes_project 11 79602414 79610263 - Wsb1 protein_coding retained_intron MGP_C3HHeJ_T0030171.1 MGP_C3HHeJ_G0018380.1 mouse_genomes_project 11 72004551 72014078 - MGP_C3HHeJ_P0030171 Aipl1 protein_coding protein_coding MGP_C3HHeJ_T0030172.1 MGP_C3HHeJ_G0018380.1 mouse_genomes_project 11 72005305 72014098 - MGP_C3HHeJ_P0030172 Aipl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0030409.1 MGP_C3HHeJ_G0018459.1 mouse_genomes_project 11 75318956 75334026 - MGP_C3HHeJ_P0030409 Dph1 protein_coding protein_coding MGP_C3HHeJ_T0030410.1 MGP_C3HHeJ_G0018459.1 mouse_genomes_project 11 75319009 75324606 - Dph1 protein_coding retained_intron MGP_C3HHeJ_T0030412.1 MGP_C3HHeJ_G0018459.1 mouse_genomes_project 11 75319609 75322607 - Dph1 protein_coding processed_transcript MGP_C3HHeJ_T0030413.1 MGP_C3HHeJ_G0018459.1 mouse_genomes_project 11 75320502 75324798 - Dph1 protein_coding processed_transcript MGP_C3HHeJ_T0030414.1 MGP_C3HHeJ_G0018459.1 mouse_genomes_project 11 75322119 75334748 - MGP_C3HHeJ_P0030414 Dph1 protein_coding protein_coding MGP_C3HHeJ_T0006156.1 MGP_C3HHeJ_G0005134.1 mouse_genomes_project 11 44913533 44920420 - 2310031A07Rik lincRNA lincRNA MGP_C3HHeJ_T0028490.1 MGP_C3HHeJ_G0017966.1 mouse_genomes_project 11 47705145 47817043 + MGP_C3HHeJ_P0028490 Olfr56 protein_coding protein_coding MGP_C3HHeJ_T0028491.1 MGP_C3HHeJ_G0017966.1 mouse_genomes_project 11 47705145 47817043 + MGP_C3HHeJ_P0028491 Olfr56 protein_coding protein_coding MGP_C3HHeJ_T0028492.1 MGP_C3HHeJ_G0017966.1 mouse_genomes_project 11 47705145 47817043 + MGP_C3HHeJ_P0028492 Olfr56 protein_coding protein_coding MGP_C3HHeJ_T0028497.1 MGP_C3HHeJ_G0017966.1 mouse_genomes_project 11 47763845 47804004 + Olfr56 protein_coding retained_intron MGP_C3HHeJ_T0028499.1 MGP_C3HHeJ_G0017966.1 mouse_genomes_project 11 47763863 47816976 + MGP_C3HHeJ_P0028499 Olfr56 protein_coding protein_coding MGP_C3HHeJ_T0028502.1 MGP_C3HHeJ_G0017966.1 mouse_genomes_project 11 47795595 47816975 + MGP_C3HHeJ_P0028502 Olfr56 protein_coding protein_coding MGP_C3HHeJ_T0100054.1 MGP_C3HHeJ_G0038248.1 mouse_genomes_project 11 119326903 119326979 + Snord1c snoRNA snoRNA MGP_C3HHeJ_T0003287.1 MGP_C3HHeJ_G0003032.1 mouse_genomes_project 11 122618103 122631676 - Rptoros antisense antisense MGP_C3HHeJ_T0027688.1 MGP_C3HHeJ_G0017766.1 mouse_genomes_project 11 2893850 2907991 - MGP_C3HHeJ_P0027688 Gck protein_coding protein_coding MGP_C3HHeJ_T0027689.1 MGP_C3HHeJ_G0017766.1 mouse_genomes_project 11 2893850 2907991 - MGP_C3HHeJ_P0027689 Gck protein_coding protein_coding MGP_C3HHeJ_T0027690.1 MGP_C3HHeJ_G0017766.1 mouse_genomes_project 11 2893853 2946268 - MGP_C3HHeJ_P0027690 Gck protein_coding protein_coding MGP_C3HHeJ_T0027691.1 MGP_C3HHeJ_G0017766.1 mouse_genomes_project 11 2894606 2895125 - MGP_C3HHeJ_P0027691 Gck protein_coding protein_coding MGP_C3HHeJ_T0029933.1 MGP_C3HHeJ_G0018333.1 mouse_genomes_project 11 69941604 69945203 + MGP_C3HHeJ_P0029933 Asgr1 protein_coding protein_coding MGP_C3HHeJ_T0029934.1 MGP_C3HHeJ_G0018333.1 mouse_genomes_project 11 69941874 69945203 + MGP_C3HHeJ_P0029934 Asgr1 protein_coding protein_coding MGP_C3HHeJ_T0029935.1 MGP_C3HHeJ_G0018333.1 mouse_genomes_project 11 69941874 69945200 + MGP_C3HHeJ_P0029935 Asgr1 protein_coding protein_coding MGP_C3HHeJ_T0029936.1 MGP_C3HHeJ_G0018333.1 mouse_genomes_project 11 69942217 69945203 + MGP_C3HHeJ_P0029936 Asgr1 protein_coding protein_coding MGP_C3HHeJ_T0029937.1 MGP_C3HHeJ_G0018333.1 mouse_genomes_project 11 69943397 69944765 + MGP_C3HHeJ_P0029937 Asgr1 protein_coding protein_coding MGP_C3HHeJ_T0028708.1 MGP_C3HHeJ_G0018024.1 mouse_genomes_project 11 50558380 50565734 + MGP_C3HHeJ_P0028708 protein_coding protein_coding MGP_C3HHeJ_T0028709.1 MGP_C3HHeJ_G0018024.1 mouse_genomes_project 11 50558382 50565733 + MGP_C3HHeJ_P0028709 protein_coding protein_coding MGP_C3HHeJ_T0029069.1 MGP_C3HHeJ_G0018141.1 mouse_genomes_project 11 58497613 58505971 - MGP_C3HHeJ_P0029069 Iba57 protein_coding protein_coding MGP_C3HHeJ_T0029070.1 MGP_C3HHeJ_G0018141.1 mouse_genomes_project 11 58503352 58505549 - MGP_C3HHeJ_P0029070 Iba57 protein_coding protein_coding MGP_C3HHeJ_T0029071.1 MGP_C3HHeJ_G0018141.1 mouse_genomes_project 11 58503584 58505932 - MGP_C3HHeJ_P0029071 Iba57 protein_coding protein_coding MGP_C3HHeJ_T0031691.1 MGP_C3HHeJ_G0018773.1 mouse_genomes_project 11 98327298 98351640 - MGP_C3HHeJ_P0031691 Sp2 protein_coding protein_coding MGP_C3HHeJ_T0031692.1 MGP_C3HHeJ_G0018773.1 mouse_genomes_project 11 98328428 98351636 - MGP_C3HHeJ_P0031692 Sp2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006153.1 MGP_C3HHeJ_G0005132.1 mouse_genomes_project 11 43611352 43668815 + Gm12160 lincRNA lincRNA MGP_C3HHeJ_T0017043.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115033158 115086583 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017044.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115034033 115042007 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017045.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115034050 115039212 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017046.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115039014 115047624 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017047.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115040005 115042007 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017048.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115041883 115086149 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017049.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115041970 115086567 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017050.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115047693 115062778 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017051.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115047809 115086589 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017052.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115047884 115086567 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017053.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115055899 115062937 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017054.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115056010 115086590 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017055.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115056117 115086583 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017056.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115059045 115086568 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017057.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115059045 115086568 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017058.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115059047 115158111 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017059.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115062742 115086566 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0017060.1 MGP_C3HHeJ_G0014978.1 mouse_genomes_project 11 115095244 115120459 - BC006965 processed_transcript processed_transcript MGP_C3HHeJ_T0032804.1 MGP_C3HHeJ_G0019059.1 mouse_genomes_project 11 108439478 108539417 - MGP_C3HHeJ_P0032804 Ern1 protein_coding protein_coding MGP_C3HHeJ_T0032805.1 MGP_C3HHeJ_G0019059.1 mouse_genomes_project 11 108442279 108539473 - Ern1 protein_coding processed_transcript MGP_C3HHeJ_T0032806.1 MGP_C3HHeJ_G0019059.1 mouse_genomes_project 11 108458623 108539457 - MGP_C3HHeJ_P0032806 Ern1 protein_coding protein_coding MGP_C3HHeJ_T0032807.1 MGP_C3HHeJ_G0019059.1 mouse_genomes_project 11 108479495 108539429 - MGP_C3HHeJ_P0032807 Ern1 protein_coding protein_coding MGP_C3HHeJ_T0032808.1 MGP_C3HHeJ_G0019059.1 mouse_genomes_project 11 108509170 108539424 - MGP_C3HHeJ_P0032808 Ern1 protein_coding protein_coding MGP_C3HHeJ_T0006296.1 MGP_C3HHeJ_G0005238.1 mouse_genomes_project 11 120091256 120092236 + Gm11729 lincRNA lincRNA MGP_C3HHeJ_T0033550.1 MGP_C3HHeJ_G0019206.1 mouse_genomes_project 11 120574399 120580272 + MGP_C3HHeJ_P0033550 Tmem235 protein_coding protein_coding MGP_C3HHeJ_T0035093.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527098 84538899 + MGP_C3HHeJ_P0035093 Coq6 protein_coding protein_coding MGP_C3HHeJ_T0035094.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527409 84538903 + MGP_C3HHeJ_P0035094 Coq6 protein_coding protein_coding MGP_C3HHeJ_T0035095.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527437 84538903 + Coq6 protein_coding retained_intron MGP_C3HHeJ_T0035096.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527471 84538899 + MGP_C3HHeJ_P0035096 Coq6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035097.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527480 84538899 + MGP_C3HHeJ_P0035097 Coq6 protein_coding protein_coding MGP_C3HHeJ_T0035098.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527482 84532211 + Coq6 protein_coding processed_transcript MGP_C3HHeJ_T0035099.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527484 84538895 + Coq6 protein_coding retained_intron MGP_C3HHeJ_T0035100.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84527505 84536138 + MGP_C3HHeJ_P0035100 Coq6 protein_coding protein_coding MGP_C3HHeJ_T0035101.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84533532 84537350 + Coq6 protein_coding processed_transcript MGP_C3HHeJ_T0035102.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84533532 84538899 + Coq6 protein_coding processed_transcript MGP_C3HHeJ_T0035103.1 MGP_C3HHeJ_G0019677.1 mouse_genomes_project 12 84536108 84537272 + Coq6 protein_coding retained_intron MGP_C3HHeJ_T0035250.1 MGP_C3HHeJ_G0019724.1 mouse_genomes_project 12 87537571 87551894 + Samd15 protein_coding retained_intron MGP_C3HHeJ_T0035251.1 MGP_C3HHeJ_G0019724.1 mouse_genomes_project 12 87537615 87551534 + Samd15 protein_coding processed_transcript MGP_C3HHeJ_T0035252.1 MGP_C3HHeJ_G0019724.1 mouse_genomes_project 12 87539457 87557623 + MGP_C3HHeJ_P0035252 Samd15 protein_coding protein_coding MGP_C3HHeJ_T0035253.1 MGP_C3HHeJ_G0019724.1 mouse_genomes_project 12 87539664 87540858 + MGP_C3HHeJ_P0035253 Samd15 protein_coding protein_coding MGP_C3HHeJ_T0034291.1 MGP_C3HHeJ_G0019394.1 mouse_genomes_project 12 26536122 26596040 - MGP_C3HHeJ_P0034291 Trappc12 protein_coding protein_coding MGP_C3HHeJ_T0034292.1 MGP_C3HHeJ_G0019394.1 mouse_genomes_project 12 26536122 26595981 - MGP_C3HHeJ_P0034292 Trappc12 protein_coding protein_coding MGP_C3HHeJ_T0034293.1 MGP_C3HHeJ_G0019394.1 mouse_genomes_project 12 26555274 26596040 - MGP_C3HHeJ_P0034293 Trappc12 protein_coding protein_coding MGP_C3HHeJ_T0035831.1 MGP_C3HHeJ_G0019917.1 mouse_genomes_project 12 114927767 114935900 + MGP_C3HHeJ_P0035831 4930427A07Rik protein_coding protein_coding MGP_C3HHeJ_T0035832.1 MGP_C3HHeJ_G0019917.1 mouse_genomes_project 12 114927776 114928274 + 4930427A07Rik protein_coding retained_intron MGP_C3HHeJ_T0035833.1 MGP_C3HHeJ_G0019917.1 mouse_genomes_project 12 114927786 114937568 + MGP_C3HHeJ_P0035833 4930427A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035834.1 MGP_C3HHeJ_G0019917.1 mouse_genomes_project 12 114927802 114928937 + 4930427A07Rik protein_coding retained_intron MGP_C3HHeJ_T0035835.1 MGP_C3HHeJ_G0019917.1 mouse_genomes_project 12 114927852 114933135 + MGP_C3HHeJ_P0035835 4930427A07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035836.1 MGP_C3HHeJ_G0019917.1 mouse_genomes_project 12 114928918 114935903 + 4930427A07Rik protein_coding retained_intron MGP_C3HHeJ_T0098861.1 MGP_C3HHeJ_G0037055.1 mouse_genomes_project 12 77357468 77357628 + Gm25926 snRNA snRNA MGP_C3HHeJ_T0035353.1 MGP_C3HHeJ_G0019751.1 mouse_genomes_project 12 99540845 99581656 + MGP_C3HHeJ_P0035353 Zc3h14 protein_coding protein_coding MGP_C3HHeJ_T0035354.1 MGP_C3HHeJ_G0019751.1 mouse_genomes_project 12 99540845 99581656 + MGP_C3HHeJ_P0035354 Zc3h14 protein_coding protein_coding MGP_C3HHeJ_T0035355.1 MGP_C3HHeJ_G0019751.1 mouse_genomes_project 12 99540845 99581656 + MGP_C3HHeJ_P0035355 Zc3h14 protein_coding protein_coding MGP_C3HHeJ_T0012707.1 MGP_C3HHeJ_G0010811.1 mouse_genomes_project 12 92614082 92615265 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035340.1 MGP_C3HHeJ_G0019745.1 mouse_genomes_project 12 96390967 96487803 + MGP_C3HHeJ_P0035340 Flrt2 protein_coding protein_coding MGP_C3HHeJ_T0035341.1 MGP_C3HHeJ_G0019745.1 mouse_genomes_project 12 96394096 96483695 + MGP_C3HHeJ_P0035341 Flrt2 protein_coding protein_coding MGP_C3HHeJ_T0012715.1 MGP_C3HHeJ_G0010819.1 mouse_genomes_project 12 104642969 104643633 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034323.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29154088 29157653 + Lamb1 protein_coding retained_intron MGP_C3HHeJ_T0034324.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29154091 29155587 + MGP_C3HHeJ_P0034324 Lamb1 protein_coding protein_coding MGP_C3HHeJ_T0034325.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29154194 29218412 + MGP_C3HHeJ_P0034325 Lamb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034326.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29154215 29218330 + MGP_C3HHeJ_P0034326 Lamb1 protein_coding protein_coding MGP_C3HHeJ_T0034327.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29165488 29176856 + Lamb1 protein_coding retained_intron MGP_C3HHeJ_T0034328.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29167007 29167772 + Lamb1 protein_coding retained_intron MGP_C3HHeJ_T0034329.1 MGP_C3HHeJ_G0019406.1 mouse_genomes_project 12 29212362 29213296 + Lamb1 protein_coding retained_intron MGP_C3HHeJ_T0034368.1 MGP_C3HHeJ_G0019420.1 mouse_genomes_project 12 30904130 30929174 + MGP_C3HHeJ_P0034368 Sypl protein_coding protein_coding MGP_C3HHeJ_T0034369.1 MGP_C3HHeJ_G0019420.1 mouse_genomes_project 12 30904423 30927045 + MGP_C3HHeJ_P0034369 Sypl protein_coding protein_coding MGP_C3HHeJ_T0034370.1 MGP_C3HHeJ_G0019420.1 mouse_genomes_project 12 30904486 30924292 + MGP_C3HHeJ_P0034370 Sypl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034371.1 MGP_C3HHeJ_G0019420.1 mouse_genomes_project 12 30904798 30917941 + Sypl protein_coding processed_transcript MGP_C3HHeJ_T0034372.1 MGP_C3HHeJ_G0019420.1 mouse_genomes_project 12 30915576 30920609 + Sypl protein_coding retained_intron MGP_C3HHeJ_T0034373.1 MGP_C3HHeJ_G0019420.1 mouse_genomes_project 12 30915656 30919708 + Sypl protein_coding processed_transcript MGP_C3HHeJ_T0000060.1 MGP_C3HHeJ_G0000048.1 mouse_genomes_project 12 115741770 115742228 - MGP_C3HHeJ_P0000060 Ighv5-16 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000061.1 MGP_C3HHeJ_G0000048.1 mouse_genomes_project 12 115741770 115742255 - MGP_C3HHeJ_P0000061 Ighv5-16 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000069.1 MGP_C3HHeJ_G0000055.1 mouse_genomes_project 12 115901238 115901810 - MGP_C3HHeJ_P0000069 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035548.1 MGP_C3HHeJ_G0019824.1 mouse_genomes_project 12 106057236 106076119 + MGP_C3HHeJ_P0035548 4930408O17Rik protein_coding protein_coding MGP_C3HHeJ_T0009745.1 MGP_C3HHeJ_G0007878.1 mouse_genomes_project 12 111073500 111073591 + Mir673 miRNA miRNA MGP_C3HHeJ_T0006320.1 MGP_C3HHeJ_G0005261.1 mouse_genomes_project 12 13256229 13329494 + Gm5432 lincRNA lincRNA MGP_C3HHeJ_T0034089.1 MGP_C3HHeJ_G0019315.1 mouse_genomes_project 12 1074905 1312711 - MGP_C3HHeJ_P0034089 Ncoa1 protein_coding protein_coding MGP_C3HHeJ_T0098837.1 MGP_C3HHeJ_G0037031.1 mouse_genomes_project 12 33540312 33540419 + Gm26071 snRNA snRNA MGP_C3HHeJ_T0035381.1 MGP_C3HHeJ_G0019757.1 mouse_genomes_project 12 100783765 100885261 + MGP_C3HHeJ_P0035381 Kcnk13 protein_coding protein_coding MGP_C3HHeJ_T0035382.1 MGP_C3HHeJ_G0019757.1 mouse_genomes_project 12 100783765 100885261 + MGP_C3HHeJ_P0035382 Kcnk13 protein_coding protein_coding MGP_C3HHeJ_T0035383.1 MGP_C3HHeJ_G0019757.1 mouse_genomes_project 12 100783771 100785547 + MGP_C3HHeJ_P0035383 Kcnk13 protein_coding protein_coding MGP_C3HHeJ_T0035384.1 MGP_C3HHeJ_G0019757.1 mouse_genomes_project 12 100783791 100885253 + MGP_C3HHeJ_P0035384 Kcnk13 protein_coding protein_coding MGP_C3HHeJ_T0098839.1 MGP_C3HHeJ_G0037033.1 mouse_genomes_project 12 50335239 50335341 - Gm22663 snRNA snRNA MGP_C3HHeJ_T0034977.1 MGP_C3HHeJ_G0019646.1 mouse_genomes_project 12 81583556 81586559 - Synj2bp protein_coding retained_intron MGP_C3HHeJ_T0034978.1 MGP_C3HHeJ_G0019646.1 mouse_genomes_project 12 81583786 81613337 - MGP_C3HHeJ_P0034978 Synj2bp protein_coding protein_coding MGP_C3HHeJ_T0034979.1 MGP_C3HHeJ_G0019646.1 mouse_genomes_project 12 81585717 81592981 - MGP_C3HHeJ_P0034979 Synj2bp protein_coding protein_coding MGP_C3HHeJ_T0034980.1 MGP_C3HHeJ_G0019646.1 mouse_genomes_project 12 81585847 81613438 - MGP_C3HHeJ_P0034980 Synj2bp protein_coding protein_coding MGP_C3HHeJ_T0012688.1 MGP_C3HHeJ_G0010792.1 mouse_genomes_project 12 68698486 68699123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035126.1 MGP_C3HHeJ_G0019688.1 mouse_genomes_project 12 84966975 84968795 + MGP_C3HHeJ_P0035126 Isca2 protein_coding protein_coding MGP_C3HHeJ_T0035345.1 MGP_C3HHeJ_G0019749.1 mouse_genomes_project 12 99413061 99459296 + MGP_C3HHeJ_P0035345 Spata7 protein_coding protein_coding MGP_C3HHeJ_T0035346.1 MGP_C3HHeJ_G0019749.1 mouse_genomes_project 12 99413066 99427138 + Spata7 protein_coding retained_intron MGP_C3HHeJ_T0035347.1 MGP_C3HHeJ_G0019749.1 mouse_genomes_project 12 99413071 99459296 + MGP_C3HHeJ_P0035347 Spata7 protein_coding protein_coding MGP_C3HHeJ_T0035348.1 MGP_C3HHeJ_G0019749.1 mouse_genomes_project 12 99413094 99417659 + Spata7 protein_coding retained_intron MGP_C3HHeJ_T0035349.1 MGP_C3HHeJ_G0019749.1 mouse_genomes_project 12 99413101 99459293 + MGP_C3HHeJ_P0035349 Spata7 protein_coding protein_coding MGP_C3HHeJ_T0035350.1 MGP_C3HHeJ_G0019749.1 mouse_genomes_project 12 99453148 99458759 + Spata7 protein_coding retained_intron MGP_C3HHeJ_T0017080.1 MGP_C3HHeJ_G0014992.1 mouse_genomes_project 12 73705859 73729005 - Gm15283 processed_transcript processed_transcript MGP_C3HHeJ_T0035061.1 MGP_C3HHeJ_G0019667.1 mouse_genomes_project 12 84182973 84190231 + MGP_C3HHeJ_P0035061 Acot4 protein_coding protein_coding MGP_C3HHeJ_T0035062.1 MGP_C3HHeJ_G0019667.1 mouse_genomes_project 12 84183301 84187730 + Acot4 protein_coding retained_intron MGP_C3HHeJ_T0000128.1 MGP_C3HHeJ_G0000098.1 mouse_genomes_project 12 118236935 118237413 - MGP_C3HHeJ_P0000128 IG_V_gene IG_V_gene MGP_C3HHeJ_T0101670.1 MGP_C3HHeJ_G0039636.1 mouse_genomes_project 12 47398878 47401082 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100126.1 MGP_C3HHeJ_G0038320.1 mouse_genomes_project 12 111194779 111194850 + Gm22205 snoRNA snoRNA MGP_C3HHeJ_T0098871.1 MGP_C3HHeJ_G0037065.1 mouse_genomes_project 12 114987324 114987428 + Gm25622 snRNA snRNA MGP_C3HHeJ_T0034992.1 MGP_C3HHeJ_G0019653.1 mouse_genomes_project 12 82557214 82558333 - MGP_C3HHeJ_P0034992 Gm5435 protein_coding protein_coding MGP_C3HHeJ_T0000231.1 MGP_C3HHeJ_G0000181.1 mouse_genomes_project 12 116086308 116086602 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034173.1 MGP_C3HHeJ_G0019350.1 mouse_genomes_project 12 9542332 9656584 + MGP_C3HHeJ_P0034173 Fam49a protein_coding protein_coding MGP_C3HHeJ_T0034174.1 MGP_C3HHeJ_G0019350.1 mouse_genomes_project 12 9542332 9656584 + MGP_C3HHeJ_P0034174 Fam49a protein_coding protein_coding MGP_C3HHeJ_T0100067.1 MGP_C3HHeJ_G0038261.1 mouse_genomes_project 12 26179759 26179891 + Gm25564 snoRNA snoRNA MGP_C3HHeJ_T0009706.1 MGP_C3HHeJ_G0007839.1 mouse_genomes_project 12 42542029 42542090 + Mir5627 miRNA miRNA MGP_C3HHeJ_T0035590.1 MGP_C3HHeJ_G0019839.1 mouse_genomes_project 12 107337029 107406948 + MGP_C3HHeJ_P0035590 Vrk1 protein_coding protein_coding MGP_C3HHeJ_T0035591.1 MGP_C3HHeJ_G0019839.1 mouse_genomes_project 12 107338080 107409320 + MGP_C3HHeJ_P0035591 Vrk1 protein_coding protein_coding MGP_C3HHeJ_T0035523.1 MGP_C3HHeJ_G0019807.1 mouse_genomes_project 12 105106999 105117641 - MGP_C3HHeJ_P0035523 Serpina11 protein_coding protein_coding MGP_C3HHeJ_T0035524.1 MGP_C3HHeJ_G0019807.1 mouse_genomes_project 12 105107011 105117611 - MGP_C3HHeJ_P0035524 Serpina11 protein_coding protein_coding MGP_C3HHeJ_T0035525.1 MGP_C3HHeJ_G0019807.1 mouse_genomes_project 12 105111430 105117603 - MGP_C3HHeJ_P0035525 Serpina11 protein_coding protein_coding MGP_C3HHeJ_T0035526.1 MGP_C3HHeJ_G0019807.1 mouse_genomes_project 12 105111516 105117601 - MGP_C3HHeJ_P0035526 Serpina11 protein_coding protein_coding MGP_C3HHeJ_T0035527.1 MGP_C3HHeJ_G0019807.1 mouse_genomes_project 12 105112656 105117625 - Serpina11 protein_coding processed_transcript MGP_C3HHeJ_T0035866.1 MGP_C3HHeJ_G0019929.1 mouse_genomes_project 12 120176944 120373374 - MGP_C3HHeJ_P0035866 Dnah11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035867.1 MGP_C3HHeJ_G0019929.1 mouse_genomes_project 12 120176944 120525997 - MGP_C3HHeJ_P0035867 Dnah11 protein_coding protein_coding MGP_C3HHeJ_T0035868.1 MGP_C3HHeJ_G0019929.1 mouse_genomes_project 12 120201082 120219288 - Dnah11 protein_coding retained_intron MGP_C3HHeJ_T0035869.1 MGP_C3HHeJ_G0019929.1 mouse_genomes_project 12 120201098 120219517 - Dnah11 protein_coding processed_transcript MGP_C3HHeJ_T0009820.1 MGP_C3HHeJ_G0007953.1 mouse_genomes_project 12 118398651 118398766 - Gm44372 miRNA miRNA MGP_C3HHeJ_T0034172.1 MGP_C3HHeJ_G0019349.1 mouse_genomes_project 12 8682620 8690195 + MGP_C3HHeJ_P0034172 Rad51ap2 protein_coding protein_coding MGP_C3HHeJ_T0012725.1 MGP_C3HHeJ_G0010829.1 mouse_genomes_project 12 115181930 115182384 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012724.1 MGP_C3HHeJ_G0010828.1 mouse_genomes_project 12 114948374 114949194 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035798.1 MGP_C3HHeJ_G0019906.1 mouse_genomes_project 12 114594666 114604627 - MGP_C3HHeJ_P0035798 Gpr132 protein_coding protein_coding MGP_C3HHeJ_T0034799.1 MGP_C3HHeJ_G0019578.1 mouse_genomes_project 12 73004623 73010927 - MGP_C3HHeJ_P0034799 Trmt5 protein_coding protein_coding MGP_C3HHeJ_T0009771.1 MGP_C3HHeJ_G0007904.1 mouse_genomes_project 12 111218877 111218997 + Mir1197 miRNA miRNA MGP_C3HHeJ_T0006311.1 MGP_C3HHeJ_G0005253.1 mouse_genomes_project 12 2260833 2305703 + 2810032G03Rik lincRNA lincRNA MGP_C3HHeJ_T0006312.1 MGP_C3HHeJ_G0005253.1 mouse_genomes_project 12 2300942 2306128 + 2810032G03Rik lincRNA lincRNA MGP_C3HHeJ_T0034115.1 MGP_C3HHeJ_G0019327.1 mouse_genomes_project 12 1774741 1908284 + MGP_C3HHeJ_P0034115 Atad2b protein_coding protein_coding MGP_C3HHeJ_T0034116.1 MGP_C3HHeJ_G0019327.1 mouse_genomes_project 12 1775046 1911639 + MGP_C3HHeJ_P0034116 Atad2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0009724.1 MGP_C3HHeJ_G0007857.1 mouse_genomes_project 12 87359241 87359339 + Gm25847 miRNA miRNA MGP_C3HHeJ_T0035175.1 MGP_C3HHeJ_G0019703.1 mouse_genomes_project 12 85562745 85598042 - MGP_C3HHeJ_P0035175 Tmed10 protein_coding protein_coding MGP_C3HHeJ_T0098866.1 MGP_C3HHeJ_G0037060.1 mouse_genomes_project 12 94371155 94371316 + Gm23249 snRNA snRNA MGP_C3HHeJ_T0035402.1 MGP_C3HHeJ_G0019764.1 mouse_genomes_project 12 101731156 101764336 - MGP_C3HHeJ_P0035402 Gpr68 protein_coding protein_coding MGP_C3HHeJ_T0035403.1 MGP_C3HHeJ_G0019764.1 mouse_genomes_project 12 101731159 101764319 - MGP_C3HHeJ_P0035403 Gpr68 protein_coding protein_coding MGP_C3HHeJ_T0035404.1 MGP_C3HHeJ_G0019764.1 mouse_genomes_project 12 101731159 101754848 - MGP_C3HHeJ_P0035404 Gpr68 protein_coding protein_coding MGP_C3HHeJ_T0035405.1 MGP_C3HHeJ_G0019764.1 mouse_genomes_project 12 101733788 101754822 - Gpr68 protein_coding processed_transcript MGP_C3HHeJ_T0035407.1 MGP_C3HHeJ_G0019764.1 mouse_genomes_project 12 101743018 101764336 - Gpr68 protein_coding processed_transcript MGP_C3HHeJ_T0035408.1 MGP_C3HHeJ_G0019764.1 mouse_genomes_project 12 101743206 101754848 - Gpr68 protein_coding processed_transcript MGP_C3HHeJ_T0000252.1 MGP_C3HHeJ_G0000202.1 mouse_genomes_project 12 118047243 118047540 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000246.1 MGP_C3HHeJ_G0000196.1 mouse_genomes_project 12 116917193 116917626 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0098007.1 MGP_C3HHeJ_G0036219.1 mouse_genomes_project 12 9984093 9984198 - Gm27952 rRNA rRNA MGP_C3HHeJ_T0034650.1 MGP_C3HHeJ_G0019527.1 mouse_genomes_project 12 65742335 65743361 - MGP_C3HHeJ_P0034650 Rpl10l protein_coding protein_coding MGP_C3HHeJ_T0012710.1 MGP_C3HHeJ_G0010814.1 mouse_genomes_project 12 101717378 101717849 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000065.1 MGP_C3HHeJ_G0000052.1 mouse_genomes_project 12 115824537 115824994 - MGP_C3HHeJ_P0000065 Ighv7-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000066.1 MGP_C3HHeJ_G0000052.1 mouse_genomes_project 12 115824537 115824994 - MGP_C3HHeJ_P0000066 Ighv7-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034295.1 MGP_C3HHeJ_G0019396.1 mouse_genomes_project 12 27378601 27783897 + MGP_C3HHeJ_P0034295 Myt1l protein_coding protein_coding MGP_C3HHeJ_T0034296.1 MGP_C3HHeJ_G0019396.1 mouse_genomes_project 12 27385080 27783897 + MGP_C3HHeJ_P0034296 Myt1l protein_coding protein_coding MGP_C3HHeJ_T0000229.1 MGP_C3HHeJ_G0000179.1 mouse_genomes_project 12 115942912 115943210 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034680.1 MGP_C3HHeJ_G0019540.1 mouse_genomes_project 12 68946345 68950951 + MGP_C3HHeJ_P0034680 Arf6 protein_coding protein_coding MGP_C3HHeJ_T0009762.1 MGP_C3HHeJ_G0007895.1 mouse_genomes_project 12 111121739 111121826 + Gm23912 miRNA miRNA MGP_C3HHeJ_T0034100.1 MGP_C3HHeJ_G0019322.1 mouse_genomes_project 12 1661840 1671983 + MGP_C3HHeJ_P0034100 Sf3b6 protein_coding protein_coding MGP_C3HHeJ_T0009701.1 MGP_C3HHeJ_G0007834.1 mouse_genomes_project 12 31019891 31020048 + Gm22904 miRNA miRNA MGP_C3HHeJ_T0011234.1 MGP_C3HHeJ_G0009367.1 mouse_genomes_project 12 69539591 69539901 + Gm22058 misc_RNA misc_RNA MGP_C3HHeJ_T0034815.1 MGP_C3HHeJ_G0019585.1 mouse_genomes_project 12 73778343 74058257 + MGP_C3HHeJ_P0034815 Syt16 protein_coding protein_coding MGP_C3HHeJ_T0034816.1 MGP_C3HHeJ_G0019585.1 mouse_genomes_project 12 73944951 74058253 + MGP_C3HHeJ_P0034816 Syt16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009751.1 MGP_C3HHeJ_G0007884.1 mouse_genomes_project 12 111089473 111089562 + Mir3070a miRNA miRNA MGP_C3HHeJ_T0034213.1 MGP_C3HHeJ_G0019365.1 mouse_genomes_project 12 14742721 14757989 + Pdia6 protein_coding retained_intron MGP_C3HHeJ_T0034214.1 MGP_C3HHeJ_G0019365.1 mouse_genomes_project 12 14742721 14760962 + MGP_C3HHeJ_P0034214 Pdia6 protein_coding protein_coding MGP_C3HHeJ_T0034215.1 MGP_C3HHeJ_G0019365.1 mouse_genomes_project 12 14742784 14750404 + Pdia6 protein_coding processed_transcript MGP_C3HHeJ_T0034216.1 MGP_C3HHeJ_G0019365.1 mouse_genomes_project 12 14750033 14753827 + Pdia6 protein_coding retained_intron MGP_C3HHeJ_T0034217.1 MGP_C3HHeJ_G0019365.1 mouse_genomes_project 12 14753417 14755116 + Pdia6 protein_coding processed_transcript MGP_C3HHeJ_T0034124.1 MGP_C3HHeJ_G0019332.1 mouse_genomes_project 12 5333997 5365087 + MGP_C3HHeJ_P0034124 Hs1bp3 protein_coding protein_coding MGP_C3HHeJ_T0034642.1 MGP_C3HHeJ_G0019524.1 mouse_genomes_project 12 64499086 64556070 + MGP_C3HHeJ_P0034642 protein_coding protein_coding MGP_C3HHeJ_T0006379.1 MGP_C3HHeJ_G0005310.1 mouse_genomes_project 12 107936219 107952970 + Gm17033 lincRNA lincRNA MGP_C3HHeJ_T0012678.1 MGP_C3HHeJ_G0010782.1 mouse_genomes_project 12 53697677 53698815 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098855.1 MGP_C3HHeJ_G0037049.1 mouse_genomes_project 12 68714126 68714230 - Gm24499 snRNA snRNA MGP_C3HHeJ_T0035285.1 MGP_C3HHeJ_G0019734.1 mouse_genomes_project 12 88470961 88543150 + MGP_C3HHeJ_P0035285 protein_coding protein_coding MGP_C3HHeJ_T0009813.1 MGP_C3HHeJ_G0007946.1 mouse_genomes_project 12 113820811 113820887 + Mir203 miRNA miRNA MGP_C3HHeJ_T0034704.1 MGP_C3HHeJ_G0019549.1 mouse_genomes_project 12 69574307 69596043 - MGP_C3HHeJ_P0034704 Sav1 protein_coding protein_coding MGP_C3HHeJ_T0034817.1 MGP_C3HHeJ_G0019586.1 mouse_genomes_project 12 74089115 74092124 + MGP_C3HHeJ_P0034817 Dbpht2 protein_coding protein_coding MGP_C3HHeJ_T0034925.1 MGP_C3HHeJ_G0019629.1 mouse_genomes_project 12 80186491 80282902 - MGP_C3HHeJ_P0034925 Actn1 protein_coding protein_coding MGP_C3HHeJ_T0034926.1 MGP_C3HHeJ_G0019629.1 mouse_genomes_project 12 80187271 80197390 - MGP_C3HHeJ_P0034926 Actn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034927.1 MGP_C3HHeJ_G0019629.1 mouse_genomes_project 12 80187271 80282622 - MGP_C3HHeJ_P0034927 Actn1 protein_coding protein_coding MGP_C3HHeJ_T0006393.1 MGP_C3HHeJ_G0005320.1 mouse_genomes_project 12 109761933 109780515 - 4930478K11Rik lincRNA lincRNA MGP_C3HHeJ_T0035343.1 MGP_C3HHeJ_G0019747.1 mouse_genomes_project 12 99032624 99041136 + MGP_C3HHeJ_P0035343 Gpr65 protein_coding protein_coding MGP_C3HHeJ_T0035608.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 109831842 109976624 + Eml1 protein_coding retained_intron MGP_C3HHeJ_T0035609.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 109871486 110007120 + MGP_C3HHeJ_P0035609 Eml1 protein_coding protein_coding MGP_C3HHeJ_T0035610.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 109884161 110006264 + MGP_C3HHeJ_P0035610 Eml1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035611.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 109884278 110008321 + MGP_C3HHeJ_P0035611 Eml1 protein_coding protein_coding MGP_C3HHeJ_T0035612.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 109936080 110008312 + Eml1 protein_coding processed_transcript MGP_C3HHeJ_T0035613.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 110003471 110006159 + Eml1 protein_coding processed_transcript MGP_C3HHeJ_T0035614.1 MGP_C3HHeJ_G0019847.1 mouse_genomes_project 12 110003529 110008365 + Eml1 protein_coding processed_transcript MGP_C3HHeJ_T0009795.1 MGP_C3HHeJ_G0007928.1 mouse_genomes_project 12 111240692 111240763 + Mir134 miRNA miRNA MGP_C3HHeJ_T0012713.1 MGP_C3HHeJ_G0010817.1 mouse_genomes_project 12 102778258 102778605 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034800.1 MGP_C3HHeJ_G0019579.1 mouse_genomes_project 12 73010994 73080097 + MGP_C3HHeJ_P0034800 Slc38a6 protein_coding protein_coding MGP_C3HHeJ_T0034801.1 MGP_C3HHeJ_G0019579.1 mouse_genomes_project 12 73011005 73043022 + MGP_C3HHeJ_P0034801 Slc38a6 protein_coding protein_coding MGP_C3HHeJ_T0034802.1 MGP_C3HHeJ_G0019579.1 mouse_genomes_project 12 73011123 73043011 + MGP_C3HHeJ_P0034802 Slc38a6 protein_coding protein_coding MGP_C3HHeJ_T0034803.1 MGP_C3HHeJ_G0019579.1 mouse_genomes_project 12 73042634 73066462 + Slc38a6 protein_coding retained_intron MGP_C3HHeJ_T0034804.1 MGP_C3HHeJ_G0019579.1 mouse_genomes_project 12 73066470 73078555 + MGP_C3HHeJ_P0034804 Slc38a6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034805.1 MGP_C3HHeJ_G0019579.1 mouse_genomes_project 12 73070832 73077883 + Slc38a6 protein_coding retained_intron MGP_C3HHeJ_T0006339.1 MGP_C3HHeJ_G0005275.1 mouse_genomes_project 12 51213456 51216097 - 1700031P21Rik lincRNA lincRNA MGP_C3HHeJ_T0009822.1 MGP_C3HHeJ_G0007955.1 mouse_genomes_project 12 119526948 119527017 + Mir153 miRNA miRNA MGP_C3HHeJ_T0034561.1 MGP_C3HHeJ_G0019499.1 mouse_genomes_project 12 55392826 55395951 - MGP_C3HHeJ_P0034561 Nkx2-1 protein_coding protein_coding MGP_C3HHeJ_T0034562.1 MGP_C3HHeJ_G0019499.1 mouse_genomes_project 12 55392826 55398605 - MGP_C3HHeJ_P0034562 Nkx2-1 protein_coding protein_coding MGP_C3HHeJ_T0009754.1 MGP_C3HHeJ_G0007887.1 mouse_genomes_project 12 111093906 111094030 + Mir433 miRNA miRNA MGP_C3HHeJ_T0034572.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56113313 56197471 + Mipol1 protein_coding retained_intron MGP_C3HHeJ_T0034573.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56113320 56251814 + Mipol1 protein_coding retained_intron MGP_C3HHeJ_T0034574.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56113322 56216057 + Mipol1 protein_coding retained_intron MGP_C3HHeJ_T0034575.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56113332 56420721 + MGP_C3HHeJ_P0034575 Mipol1 protein_coding protein_coding MGP_C3HHeJ_T0034576.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56113332 56369204 + MGP_C3HHeJ_P0034576 Mipol1 protein_coding protein_coding MGP_C3HHeJ_T0034577.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56113377 56265984 + Mipol1 protein_coding retained_intron MGP_C3HHeJ_T0034578.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56170592 56420721 + MGP_C3HHeJ_P0034578 Mipol1 protein_coding protein_coding MGP_C3HHeJ_T0034579.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56170592 56380774 + MGP_C3HHeJ_P0034579 Mipol1 protein_coding protein_coding MGP_C3HHeJ_T0034580.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56194891 56196483 + Mipol1 protein_coding retained_intron MGP_C3HHeJ_T0034581.1 MGP_C3HHeJ_G0019504.1 mouse_genomes_project 12 56222405 56265403 + Mipol1 protein_coding processed_transcript MGP_C3HHeJ_T0035875.1 MGP_C3HHeJ_G0019933.1 mouse_genomes_project 12 121526204 121620979 - MGP_C3HHeJ_P0035875 Itgb8 protein_coding protein_coding MGP_C3HHeJ_T0035876.1 MGP_C3HHeJ_G0019933.1 mouse_genomes_project 12 121567118 121620978 - Itgb8 protein_coding retained_intron MGP_C3HHeJ_T0035877.1 MGP_C3HHeJ_G0019933.1 mouse_genomes_project 12 121582902 121620947 - Itgb8 protein_coding retained_intron MGP_C3HHeJ_T0006385.1 MGP_C3HHeJ_G0005313.1 mouse_genomes_project 12 108344309 108346420 - Gm16087 lincRNA lincRNA MGP_C3HHeJ_T0098024.1 MGP_C3HHeJ_G0036236.1 mouse_genomes_project 12 122293904 122294022 - Gm25675 rRNA rRNA MGP_C3HHeJ_T0034232.1 MGP_C3HHeJ_G0019370.1 mouse_genomes_project 12 18838517 18861317 - MGP_C3HHeJ_P0034232 Itgb1bp1 protein_coding protein_coding MGP_C3HHeJ_T0034233.1 MGP_C3HHeJ_G0019370.1 mouse_genomes_project 12 18838804 18861177 - MGP_C3HHeJ_P0034233 Itgb1bp1 protein_coding protein_coding MGP_C3HHeJ_T0034234.1 MGP_C3HHeJ_G0019370.1 mouse_genomes_project 12 18839415 18840837 - MGP_C3HHeJ_P0034234 Itgb1bp1 protein_coding protein_coding MGP_C3HHeJ_T0034235.1 MGP_C3HHeJ_G0019370.1 mouse_genomes_project 12 18840001 18861265 - MGP_C3HHeJ_P0034235 Itgb1bp1 protein_coding protein_coding MGP_C3HHeJ_T0034236.1 MGP_C3HHeJ_G0019370.1 mouse_genomes_project 12 18840139 18841484 - Itgb1bp1 protein_coding retained_intron MGP_C3HHeJ_T0035649.1 MGP_C3HHeJ_G0019857.1 mouse_genomes_project 12 111090724 111102965 - MGP_C3HHeJ_P0035649 Rtl1 protein_coding protein_coding MGP_C3HHeJ_T0000072.1 MGP_C3HHeJ_G0000058.1 mouse_genomes_project 12 115926155 115926451 - MGP_C3HHeJ_P0000072 Ighv16-1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000073.1 MGP_C3HHeJ_G0000058.1 mouse_genomes_project 12 115926155 115926606 - MGP_C3HHeJ_P0000073 Ighv16-1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000057.1 MGP_C3HHeJ_G0000046.1 mouse_genomes_project 12 115711452 115711891 - MGP_C3HHeJ_P0000057 Ighv2-7 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034543.1 MGP_C3HHeJ_G0019490.1 mouse_genomes_project 12 54069818 54090830 - MGP_C3HHeJ_P0034543 Ppp2r3c protein_coding protein_coding MGP_C3HHeJ_T0098357.1 MGP_C3HHeJ_G0036566.1 mouse_genomes_project 12 43294861 43309194 - Gm15902 sense_intronic sense_intronic MGP_C3HHeJ_T0034169.1 MGP_C3HHeJ_G0019346.1 mouse_genomes_project 12 8458453 8483022 - MGP_C3HHeJ_P0034169 Gen1 protein_coding protein_coding MGP_C3HHeJ_T0100104.1 MGP_C3HHeJ_G0038298.1 mouse_genomes_project 12 107569886 107570018 + Gm24986 snoRNA snoRNA MGP_C3HHeJ_T0034344.1 MGP_C3HHeJ_G0019411.1 mouse_genomes_project 12 29505465 29546743 - MGP_C3HHeJ_P0034344 Bcap29 protein_coding protein_coding MGP_C3HHeJ_T0034345.1 MGP_C3HHeJ_G0019411.1 mouse_genomes_project 12 29505465 29546682 - MGP_C3HHeJ_P0034345 Bcap29 protein_coding protein_coding MGP_C3HHeJ_T0034201.1 MGP_C3HHeJ_G0019361.1 mouse_genomes_project 12 14360964 14460430 + MGP_C3HHeJ_P0034201 Rock2 protein_coding protein_coding MGP_C3HHeJ_T0000009.1 MGP_C3HHeJ_G0000007.1 mouse_genomes_project 12 115103378 115108666 - MGP_C3HHeJ_P0000009 Ighg1 IG_C_gene IG_C_gene MGP_C3HHeJ_T0000010.1 MGP_C3HHeJ_G0000007.1 mouse_genomes_project 12 115107013 115108666 - MGP_C3HHeJ_P0000010 Ighg1 IG_C_gene IG_C_gene MGP_C3HHeJ_T0009703.1 MGP_C3HHeJ_G0007836.1 mouse_genomes_project 12 34957215 34957289 + Mir5099 miRNA miRNA MGP_C3HHeJ_T0035843.1 MGP_C3HHeJ_G0019921.1 mouse_genomes_project 12 118290436 118303509 + MGP_C3HHeJ_P0035843 Zfp386 protein_coding protein_coding MGP_C3HHeJ_T0035844.1 MGP_C3HHeJ_G0019921.1 mouse_genomes_project 12 118290476 118297788 + Zfp386 protein_coding retained_intron MGP_C3HHeJ_T0035845.1 MGP_C3HHeJ_G0019921.1 mouse_genomes_project 12 118290488 118306278 + MGP_C3HHeJ_P0035845 Zfp386 protein_coding protein_coding MGP_C3HHeJ_T0035846.1 MGP_C3HHeJ_G0019921.1 mouse_genomes_project 12 118290541 118294340 + Zfp386 protein_coding retained_intron MGP_C3HHeJ_T0100087.1 MGP_C3HHeJ_G0038281.1 mouse_genomes_project 12 64475184 64475270 + Gm25970 snoRNA snoRNA MGP_C3HHeJ_T0034412.1 MGP_C3HHeJ_G0019437.1 mouse_genomes_project 12 34197728 34263649 - MGP_C3HHeJ_P0034412 Bzw2 protein_coding protein_coding MGP_C3HHeJ_T0035784.1 MGP_C3HHeJ_G0019900.1 mouse_genomes_project 12 114407416 114411372 + MGP_C3HHeJ_P0035784 Zbtb42 protein_coding protein_coding MGP_C3HHeJ_T0035785.1 MGP_C3HHeJ_G0019900.1 mouse_genomes_project 12 114407428 114411372 + MGP_C3HHeJ_P0035785 Zbtb42 protein_coding protein_coding MGP_C3HHeJ_T0035786.1 MGP_C3HHeJ_G0019900.1 mouse_genomes_project 12 114407466 114408560 + MGP_C3HHeJ_P0035786 Zbtb42 protein_coding protein_coding MGP_C3HHeJ_T0035209.1 MGP_C3HHeJ_G0019710.1 mouse_genomes_project 12 86318932 86343376 - MGP_C3HHeJ_P0035209 Tgfb3 protein_coding protein_coding MGP_C3HHeJ_T0035483.1 MGP_C3HHeJ_G0019791.1 mouse_genomes_project 12 104371518 104389063 + MGP_C3HHeJ_P0035483 Otub2 protein_coding protein_coding MGP_C3HHeJ_T0035484.1 MGP_C3HHeJ_G0019791.1 mouse_genomes_project 12 104371534 104389069 + MGP_C3HHeJ_P0035484 Otub2 protein_coding protein_coding MGP_C3HHeJ_T0035485.1 MGP_C3HHeJ_G0019791.1 mouse_genomes_project 12 104371602 104389069 + Otub2 protein_coding retained_intron MGP_C3HHeJ_T0035486.1 MGP_C3HHeJ_G0019791.1 mouse_genomes_project 12 104371821 104385625 + MGP_C3HHeJ_P0035486 Otub2 protein_coding protein_coding MGP_C3HHeJ_T0035487.1 MGP_C3HHeJ_G0019791.1 mouse_genomes_project 12 104375490 104389074 + MGP_C3HHeJ_P0035487 Otub2 protein_coding protein_coding MGP_C3HHeJ_T0034662.1 MGP_C3HHeJ_G0019530.1 mouse_genomes_project 12 68730692 68740859 + MGP_C3HHeJ_P0034662 Lrr1 protein_coding protein_coding MGP_C3HHeJ_T0034104.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1713108 1725511 - Mfsd2b protein_coding retained_intron MGP_C3HHeJ_T0034105.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1713108 1725514 - MGP_C3HHeJ_P0034105 Mfsd2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034106.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1713797 1725501 - Mfsd2b protein_coding retained_intron MGP_C3HHeJ_T0034107.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1713797 1725514 - MGP_C3HHeJ_P0034107 Mfsd2b protein_coding protein_coding MGP_C3HHeJ_T0034108.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1713797 1725514 - MGP_C3HHeJ_P0034108 Mfsd2b protein_coding protein_coding MGP_C3HHeJ_T0034109.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1714261 1725515 - Mfsd2b protein_coding retained_intron MGP_C3HHeJ_T0034110.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1718175 1720336 - Mfsd2b protein_coding retained_intron MGP_C3HHeJ_T0034111.1 MGP_C3HHeJ_G0019325.1 mouse_genomes_project 12 1720022 1725515 - MGP_C3HHeJ_P0034111 Mfsd2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006394.1 MGP_C3HHeJ_G0005321.1 mouse_genomes_project 12 110005131 110024668 - Gm16596 lincRNA lincRNA MGP_C3HHeJ_T0000828.1 MGP_C3HHeJ_G0000769.1 mouse_genomes_project 12 56451017 56455436 + TEC TEC MGP_C3HHeJ_T0034421.1 MGP_C3HHeJ_G0019444.1 mouse_genomes_project 12 35372846 35714464 + MGP_C3HHeJ_P0034421 Agmo protein_coding protein_coding MGP_C3HHeJ_T0034422.1 MGP_C3HHeJ_G0019444.1 mouse_genomes_project 12 35372945 35376734 + MGP_C3HHeJ_P0034422 Agmo protein_coding protein_coding MGP_C3HHeJ_T0034423.1 MGP_C3HHeJ_G0019444.1 mouse_genomes_project 12 35372974 35543358 + Agmo protein_coding retained_intron MGP_C3HHeJ_T0034424.1 MGP_C3HHeJ_G0019444.1 mouse_genomes_project 12 35373055 35560752 + MGP_C3HHeJ_P0034424 Agmo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034425.1 MGP_C3HHeJ_G0019444.1 mouse_genomes_project 12 35373237 35698568 + MGP_C3HHeJ_P0034425 Agmo protein_coding protein_coding MGP_C3HHeJ_T0035456.1 MGP_C3HHeJ_G0019783.1 mouse_genomes_project 12 103708774 103713300 - MGP_C3HHeJ_P0035456 AK010878 protein_coding protein_coding MGP_C3HHeJ_T0035457.1 MGP_C3HHeJ_G0019783.1 mouse_genomes_project 12 103711780 103713303 - MGP_C3HHeJ_P0035457 AK010878 protein_coding protein_coding MGP_C3HHeJ_T0035021.1 MGP_C3HHeJ_G0019657.1 mouse_genomes_project 12 83657862 83708416 - MGP_C3HHeJ_P0035021 Zfyve1 protein_coding protein_coding MGP_C3HHeJ_T0035414.1 MGP_C3HHeJ_G0019768.1 mouse_genomes_project 12 102536618 102622666 - MGP_C3HHeJ_P0035414 Tc2n protein_coding protein_coding MGP_C3HHeJ_T0035415.1 MGP_C3HHeJ_G0019768.1 mouse_genomes_project 12 102537740 102618664 - MGP_C3HHeJ_P0035415 Tc2n protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035416.1 MGP_C3HHeJ_G0019768.1 mouse_genomes_project 12 102540208 102616295 - MGP_C3HHeJ_P0035416 Tc2n protein_coding protein_coding MGP_C3HHeJ_T0035417.1 MGP_C3HHeJ_G0019768.1 mouse_genomes_project 12 102540255 102618332 - MGP_C3HHeJ_P0035417 Tc2n protein_coding protein_coding MGP_C3HHeJ_T0034352.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29855226 29879986 - MGP_C3HHeJ_P0034352 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034353.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29858352 29879674 - MGP_C3HHeJ_P0034353 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034354.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29859776 29869890 - MGP_C3HHeJ_P0034354 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034355.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29859887 29863767 - Hbp1 protein_coding retained_intron MGP_C3HHeJ_T0034356.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29861796 29879059 - MGP_C3HHeJ_P0034356 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034357.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29863305 29879621 - MGP_C3HHeJ_P0034357 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034358.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29865423 29879672 - MGP_C3HHeJ_P0034358 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034359.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29866009 29879661 - MGP_C3HHeJ_P0034359 Hbp1 protein_coding protein_coding MGP_C3HHeJ_T0034360.1 MGP_C3HHeJ_G0019415.1 mouse_genomes_project 12 29869233 29879685 - Hbp1 protein_coding retained_intron MGP_C3HHeJ_T0035459.1 MGP_C3HHeJ_G0019785.1 mouse_genomes_project 12 103740139 103832659 - MGP_C3HHeJ_P0035459 Btbd7 protein_coding protein_coding MGP_C3HHeJ_T0035395.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101630293 101726024 + MGP_C3HHeJ_P0035395 9030617O03Rik protein_coding protein_coding MGP_C3HHeJ_T0035396.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101630314 101725768 + MGP_C3HHeJ_P0035396 9030617O03Rik protein_coding protein_coding MGP_C3HHeJ_T0035397.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101630322 101752305 + MGP_C3HHeJ_P0035397 9030617O03Rik protein_coding protein_coding MGP_C3HHeJ_T0035398.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101630331 101725768 + MGP_C3HHeJ_P0035398 9030617O03Rik protein_coding protein_coding MGP_C3HHeJ_T0035399.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101630372 101693511 + MGP_C3HHeJ_P0035399 9030617O03Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035400.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101637234 101725762 + MGP_C3HHeJ_P0035400 9030617O03Rik protein_coding protein_coding MGP_C3HHeJ_T0035401.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101720602 101728813 + MGP_C3HHeJ_P0035401 9030617O03Rik protein_coding protein_coding MGP_C3HHeJ_T0035406.1 MGP_C3HHeJ_G0019763.1 mouse_genomes_project 12 101741234 101750813 + 9030617O03Rik protein_coding processed_transcript MGP_C3HHeJ_T0035519.1 MGP_C3HHeJ_G0019805.1 mouse_genomes_project 12 104912028 104923480 - MGP_C3HHeJ_P0035519 protein_coding protein_coding MGP_C3HHeJ_T0035522.1 MGP_C3HHeJ_G0019805.1 mouse_genomes_project 12 104912030 104923480 - MGP_C3HHeJ_P0035522 protein_coding protein_coding MGP_C3HHeJ_T0034906.1 MGP_C3HHeJ_G0019621.1 mouse_genomes_project 12 79056881 79065879 - MGP_C3HHeJ_P0034906 Pigh protein_coding protein_coding MGP_C3HHeJ_T0035540.1 MGP_C3HHeJ_G0019817.1 mouse_genomes_project 12 105468990 105475163 + MGP_C3HHeJ_P0035540 Serpina3j protein_coding protein_coding MGP_C3HHeJ_T0101678.1 MGP_C3HHeJ_G0039643.1 mouse_genomes_project 12 104885464 104896933 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0035634.1 MGP_C3HHeJ_G0019854.1 mouse_genomes_project 12 110379077 110527780 + MGP_C3HHeJ_P0035634 Wdr25 protein_coding unknown_likely_coding MGP_C3HHeJ_T0098843.1 MGP_C3HHeJ_G0037037.1 mouse_genomes_project 12 52907617 52907763 - Gm24692 snRNA snRNA MGP_C3HHeJ_T0034420.1 MGP_C3HHeJ_G0019443.1 mouse_genomes_project 12 35254650 35317213 + MGP_C3HHeJ_P0034420 Meox2 protein_coding protein_coding MGP_C3HHeJ_T0000239.1 MGP_C3HHeJ_G0000189.1 mouse_genomes_project 12 116393456 116395414 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0012692.1 MGP_C3HHeJ_G0010796.1 mouse_genomes_project 12 76033444 76033736 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035805.1 MGP_C3HHeJ_G0019911.1 mouse_genomes_project 12 114756258 114758212 + MGP_C3HHeJ_P0035805 9230104M06Rik protein_coding protein_coding MGP_C3HHeJ_T0100094.1 MGP_C3HHeJ_G0038288.1 mouse_genomes_project 12 78111813 78111934 + Gm24994 snoRNA snoRNA MGP_C3HHeJ_T0034775.1 MGP_C3HHeJ_G0019569.1 mouse_genomes_project 12 72220950 72262591 + MGP_C3HHeJ_P0034775 Pcnx4 protein_coding protein_coding MGP_C3HHeJ_T0098836.1 MGP_C3HHeJ_G0037030.1 mouse_genomes_project 12 18931733 18931832 + Gm22766 snRNA snRNA MGP_C3HHeJ_T0035425.1 MGP_C3HHeJ_G0019771.1 mouse_genomes_project 12 102833719 102876536 - MGP_C3HHeJ_P0035425 Atxn3 protein_coding protein_coding MGP_C3HHeJ_T0035426.1 MGP_C3HHeJ_G0019771.1 mouse_genomes_project 12 102837899 102849174 - MGP_C3HHeJ_P0035426 Atxn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035427.1 MGP_C3HHeJ_G0019771.1 mouse_genomes_project 12 102847742 102876533 - MGP_C3HHeJ_P0035427 Atxn3 protein_coding protein_coding MGP_C3HHeJ_T0035428.1 MGP_C3HHeJ_G0019771.1 mouse_genomes_project 12 102847744 102876533 - MGP_C3HHeJ_P0035428 Atxn3 protein_coding protein_coding MGP_C3HHeJ_T0035429.1 MGP_C3HHeJ_G0019771.1 mouse_genomes_project 12 102847767 102876438 - MGP_C3HHeJ_P0035429 Atxn3 protein_coding protein_coding MGP_C3HHeJ_T0098011.1 MGP_C3HHeJ_G0036223.1 mouse_genomes_project 12 43710566 43710650 + Gm22076 rRNA rRNA MGP_C3HHeJ_T0035447.1 MGP_C3HHeJ_G0019778.1 mouse_genomes_project 12 103508928 103655037 - MGP_C3HHeJ_P0035447 Itpk1 protein_coding protein_coding MGP_C3HHeJ_T0035448.1 MGP_C3HHeJ_G0019778.1 mouse_genomes_project 12 103524629 103535889 - Itpk1 protein_coding processed_transcript MGP_C3HHeJ_T0035449.1 MGP_C3HHeJ_G0019778.1 mouse_genomes_project 12 103529080 103592160 - MGP_C3HHeJ_P0035449 Itpk1 protein_coding protein_coding MGP_C3HHeJ_T0035450.1 MGP_C3HHeJ_G0019778.1 mouse_genomes_project 12 103566507 103655059 - MGP_C3HHeJ_P0035450 Itpk1 protein_coding protein_coding MGP_C3HHeJ_T0034347.1 MGP_C3HHeJ_G0019413.1 mouse_genomes_project 12 29566946 29866594 + MGP_C3HHeJ_P0034347 Cog5 protein_coding protein_coding MGP_C3HHeJ_T0034351.1 MGP_C3HHeJ_G0019413.1 mouse_genomes_project 12 29674304 29854732 + MGP_C3HHeJ_P0034351 Cog5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0011247.1 MGP_C3HHeJ_G0009380.1 mouse_genomes_project 12 121090258 121090457 + Gm22537 misc_RNA misc_RNA MGP_C3HHeJ_T0100110.1 MGP_C3HHeJ_G0038304.1 mouse_genomes_project 12 111150362 111150436 + Gm24895 snoRNA snoRNA MGP_C3HHeJ_T0012690.1 MGP_C3HHeJ_G0010794.1 mouse_genomes_project 12 73741012 73741309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100124.1 MGP_C3HHeJ_G0038318.1 mouse_genomes_project 12 111190220 111190293 + Gm23787 snoRNA snoRNA MGP_C3HHeJ_T0034184.1 MGP_C3HHeJ_G0019357.1 mouse_genomes_project 12 13991979 14046655 - MGP_C3HHeJ_P0034184 Lpin1 protein_coding protein_coding MGP_C3HHeJ_T0034185.1 MGP_C3HHeJ_G0019357.1 mouse_genomes_project 12 13991979 14046655 - MGP_C3HHeJ_P0034185 Lpin1 protein_coding protein_coding MGP_C3HHeJ_T0098272.1 MGP_C3HHeJ_G0036484.1 mouse_genomes_project 12 29784008 29784143 + Gm25913 scaRNA scaRNA MGP_C3HHeJ_T0035671.1 MGP_C3HHeJ_G0019863.1 mouse_genomes_project 12 112306915 112378753 + MGP_C3HHeJ_P0035671 protein_coding protein_coding MGP_C3HHeJ_T0035672.1 MGP_C3HHeJ_G0019863.1 mouse_genomes_project 12 112306951 112365097 + MGP_C3HHeJ_P0035672 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035673.1 MGP_C3HHeJ_G0019863.1 mouse_genomes_project 12 112306960 112309212 + protein_coding retained_intron MGP_C3HHeJ_T0035674.1 MGP_C3HHeJ_G0019863.1 mouse_genomes_project 12 112306989 112311258 + protein_coding processed_transcript MGP_C3HHeJ_T0035675.1 MGP_C3HHeJ_G0019863.1 mouse_genomes_project 12 112307180 112365269 + MGP_C3HHeJ_P0035675 protein_coding protein_coding MGP_C3HHeJ_T0006318.1 MGP_C3HHeJ_G0005259.1 mouse_genomes_project 12 10097939 10104253 + Platr19 lincRNA lincRNA MGP_C3HHeJ_T0034866.1 MGP_C3HHeJ_G0019604.1 mouse_genomes_project 12 76436563 76483091 + MGP_C3HHeJ_P0034866 Plekhg3 protein_coding protein_coding MGP_C3HHeJ_T0034867.1 MGP_C3HHeJ_G0019604.1 mouse_genomes_project 12 76450520 76482460 + MGP_C3HHeJ_P0034867 Plekhg3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035723.1 MGP_C3HHeJ_G0019882.1 mouse_genomes_project 12 113374784 113378533 - MGP_C3HHeJ_P0035723 Bag5 protein_coding protein_coding MGP_C3HHeJ_T0035724.1 MGP_C3HHeJ_G0019882.1 mouse_genomes_project 12 113375183 113378203 - MGP_C3HHeJ_P0035724 Bag5 protein_coding protein_coding MGP_C3HHeJ_T0035725.1 MGP_C3HHeJ_G0019882.1 mouse_genomes_project 12 113376488 113378229 - MGP_C3HHeJ_P0035725 Bag5 protein_coding protein_coding MGP_C3HHeJ_T0035726.1 MGP_C3HHeJ_G0019882.1 mouse_genomes_project 12 113376554 113378229 - MGP_C3HHeJ_P0035726 Bag5 protein_coding protein_coding MGP_C3HHeJ_T0006354.1 MGP_C3HHeJ_G0005286.1 mouse_genomes_project 12 80808818 80811680 + Gm26796 lincRNA lincRNA MGP_C3HHeJ_T0000106.1 MGP_C3HHeJ_G0000082.1 mouse_genomes_project 12 116459362 116459795 - MGP_C3HHeJ_P0000106 Ighv1-49 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000107.1 MGP_C3HHeJ_G0000082.1 mouse_genomes_project 12 116459362 116459795 - MGP_C3HHeJ_P0000107 Ighv1-49 IG_V_gene IG_V_gene MGP_C3HHeJ_T0011229.1 MGP_C3HHeJ_G0009362.1 mouse_genomes_project 12 33056125 33056366 - Gm24359 misc_RNA misc_RNA MGP_C3HHeJ_T0006380.1 MGP_C3HHeJ_G0005311.1 mouse_genomes_project 12 108064316 108095691 - 4933406K04Rik lincRNA lincRNA MGP_C3HHeJ_T0006381.1 MGP_C3HHeJ_G0005311.1 mouse_genomes_project 12 108075095 108095653 - 4933406K04Rik lincRNA lincRNA MGP_C3HHeJ_T0006382.1 MGP_C3HHeJ_G0005311.1 mouse_genomes_project 12 108080495 108095662 - 4933406K04Rik lincRNA lincRNA MGP_C3HHeJ_T0006383.1 MGP_C3HHeJ_G0005311.1 mouse_genomes_project 12 108085385 108095691 - 4933406K04Rik lincRNA lincRNA MGP_C3HHeJ_T0035057.1 MGP_C3HHeJ_G0019663.1 mouse_genomes_project 12 84077230 84077896 - MGP_C3HHeJ_P0035057 Gm26571 protein_coding protein_coding MGP_C3HHeJ_T0006424.1 MGP_C3HHeJ_G0005330.1 mouse_genomes_project 12 113071422 113075499 - Gm10425 lincRNA lincRNA MGP_C3HHeJ_T0035243.1 MGP_C3HHeJ_G0019720.1 mouse_genomes_project 12 87426597 87432515 - MGP_C3HHeJ_P0035243 Ngb protein_coding protein_coding MGP_C3HHeJ_T0035244.1 MGP_C3HHeJ_G0019720.1 mouse_genomes_project 12 87426597 87432498 - MGP_C3HHeJ_P0035244 Ngb protein_coding protein_coding MGP_C3HHeJ_T0035245.1 MGP_C3HHeJ_G0019720.1 mouse_genomes_project 12 87427091 87432326 - MGP_C3HHeJ_P0035245 Ngb protein_coding protein_coding MGP_C3HHeJ_T0035772.1 MGP_C3HHeJ_G0019897.1 mouse_genomes_project 12 114343849 114369040 + MGP_C3HHeJ_P0035772 Adssl1 protein_coding protein_coding MGP_C3HHeJ_T0035773.1 MGP_C3HHeJ_G0019897.1 mouse_genomes_project 12 114343851 114369055 + MGP_C3HHeJ_P0035773 Adssl1 protein_coding protein_coding MGP_C3HHeJ_T0100077.1 MGP_C3HHeJ_G0038271.1 mouse_genomes_project 12 43458910 43459041 + Gm24731 snoRNA snoRNA MGP_C3HHeJ_T0035684.1 MGP_C3HHeJ_G0019867.1 mouse_genomes_project 12 112478149 112566557 + MGP_C3HHeJ_P0035684 Tecpr2 protein_coding protein_coding MGP_C3HHeJ_T0035685.1 MGP_C3HHeJ_G0019867.1 mouse_genomes_project 12 112478149 112566559 + MGP_C3HHeJ_P0035685 Tecpr2 protein_coding protein_coding MGP_C3HHeJ_T0035112.1 MGP_C3HHeJ_G0019679.1 mouse_genomes_project 12 84575369 84601104 + MGP_C3HHeJ_P0035112 Bbof1 protein_coding protein_coding MGP_C3HHeJ_T0035113.1 MGP_C3HHeJ_G0019679.1 mouse_genomes_project 12 84580668 84595745 + MGP_C3HHeJ_P0035113 Bbof1 protein_coding protein_coding MGP_C3HHeJ_T0035115.1 MGP_C3HHeJ_G0019679.1 mouse_genomes_project 12 84587206 84597704 + MGP_C3HHeJ_P0035115 Bbof1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098021.1 MGP_C3HHeJ_G0036233.1 mouse_genomes_project 12 98117471 98117551 - Gm23558 rRNA rRNA MGP_C3HHeJ_T0034795.1 MGP_C3HHeJ_G0019577.1 mouse_genomes_project 12 72834415 72995801 + MGP_C3HHeJ_P0034795 Mnat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034796.1 MGP_C3HHeJ_G0019577.1 mouse_genomes_project 12 72834415 72996937 + MGP_C3HHeJ_P0034796 Mnat1 protein_coding protein_coding MGP_C3HHeJ_T0034797.1 MGP_C3HHeJ_G0019577.1 mouse_genomes_project 12 72834415 72956005 + MGP_C3HHeJ_P0034797 Mnat1 protein_coding protein_coding MGP_C3HHeJ_T0034798.1 MGP_C3HHeJ_G0019577.1 mouse_genomes_project 12 72834537 72995484 + MGP_C3HHeJ_P0034798 Mnat1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034542.1 MGP_C3HHeJ_G0019489.1 mouse_genomes_project 12 53877687 53929653 + MGP_C3HHeJ_P0034542 protein_coding protein_coding MGP_C3HHeJ_T0000827.1 MGP_C3HHeJ_G0000768.1 mouse_genomes_project 12 55472133 55472997 - TEC TEC MGP_C3HHeJ_T0006331.1 MGP_C3HHeJ_G0005269.1 mouse_genomes_project 12 30869847 30904029 - 4933406C10Rik lincRNA lincRNA MGP_C3HHeJ_T0006332.1 MGP_C3HHeJ_G0005269.1 mouse_genomes_project 12 30875413 30904023 - 4933406C10Rik lincRNA lincRNA MGP_C3HHeJ_T0003354.1 MGP_C3HHeJ_G0003081.1 mouse_genomes_project 12 104912998 104916777 + B430119L08Rik antisense antisense MGP_C3HHeJ_T0034202.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14460803 14472180 - Pqlc3 protein_coding retained_intron MGP_C3HHeJ_T0034203.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14460803 14472266 - MGP_C3HHeJ_P0034203 Pqlc3 protein_coding protein_coding MGP_C3HHeJ_T0034204.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14465106 14472173 - MGP_C3HHeJ_P0034204 Pqlc3 protein_coding protein_coding MGP_C3HHeJ_T0034205.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14465655 14472174 - Pqlc3 protein_coding processed_transcript MGP_C3HHeJ_T0034206.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14465800 14472264 - MGP_C3HHeJ_P0034206 Pqlc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034207.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14467787 14472556 - Pqlc3 protein_coding processed_transcript MGP_C3HHeJ_T0034208.1 MGP_C3HHeJ_G0019362.1 mouse_genomes_project 12 14467787 14472556 - Pqlc3 protein_coding processed_transcript MGP_C3HHeJ_T0034118.1 MGP_C3HHeJ_G0019329.1 mouse_genomes_project 12 4970924 4982292 + MGP_C3HHeJ_P0034118 Apob protein_coding protein_coding MGP_C3HHeJ_T0034119.1 MGP_C3HHeJ_G0019329.1 mouse_genomes_project 12 4970924 5011938 + MGP_C3HHeJ_P0034119 Apob protein_coding protein_coding MGP_C3HHeJ_T0034120.1 MGP_C3HHeJ_G0019329.1 mouse_genomes_project 12 4971055 5011603 + MGP_C3HHeJ_P0034120 Apob protein_coding protein_coding MGP_C3HHeJ_T0034121.1 MGP_C3HHeJ_G0019329.1 mouse_genomes_project 12 5007455 5011938 + MGP_C3HHeJ_P0034121 Apob protein_coding protein_coding MGP_C3HHeJ_T0011232.1 MGP_C3HHeJ_G0009365.1 mouse_genomes_project 12 61036344 61036657 + Gm23213 misc_RNA misc_RNA MGP_C3HHeJ_T0009787.1 MGP_C3HHeJ_G0007920.1 mouse_genomes_project 12 111230856 111230935 + Mir300 miRNA miRNA MGP_C3HHeJ_T0035693.1 MGP_C3HHeJ_G0019869.1 mouse_genomes_project 12 112641490 112723121 + MGP_C3HHeJ_P0035693 Rcor1 protein_coding protein_coding MGP_C3HHeJ_T0000250.1 MGP_C3HHeJ_G0000200.1 mouse_genomes_project 12 117557353 117557786 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034669.1 MGP_C3HHeJ_G0019535.1 mouse_genomes_project 12 68764585 68793029 - MGP_C3HHeJ_P0034669 Pole2 protein_coding protein_coding MGP_C3HHeJ_T0012675.1 MGP_C3HHeJ_G0010779.1 mouse_genomes_project 12 49861968 49862430 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009769.1 MGP_C3HHeJ_G0007902.1 mouse_genomes_project 12 111218339 111218451 - Gm25750 miRNA miRNA MGP_C3HHeJ_T0034516.1 MGP_C3HHeJ_G0019477.1 mouse_genomes_project 12 51872561 52726908 + MGP_C3HHeJ_P0034516 Npas3 protein_coding protein_coding MGP_C3HHeJ_T0034517.1 MGP_C3HHeJ_G0019477.1 mouse_genomes_project 12 51872561 52726909 + MGP_C3HHeJ_P0034517 Npas3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035766.1 MGP_C3HHeJ_G0019892.1 mouse_genomes_project 12 113836665 113875156 + MGP_C3HHeJ_P0035766 Kif26a protein_coding protein_coding MGP_C3HHeJ_T0035767.1 MGP_C3HHeJ_G0019892.1 mouse_genomes_project 12 113871609 113872906 + Kif26a protein_coding processed_transcript MGP_C3HHeJ_T0003353.1 MGP_C3HHeJ_G0003080.1 mouse_genomes_project 12 104316258 104328490 + Gm15523 antisense antisense MGP_C3HHeJ_T0034404.1 MGP_C3HHeJ_G0019433.1 mouse_genomes_project 12 34025936 34050749 + MGP_C3HHeJ_P0034404 Agr3 protein_coding protein_coding MGP_C3HHeJ_T0034405.1 MGP_C3HHeJ_G0019433.1 mouse_genomes_project 12 34025938 34028688 + MGP_C3HHeJ_P0034405 Agr3 protein_coding protein_coding MGP_C3HHeJ_T0009816.1 MGP_C3HHeJ_G0007949.1 mouse_genomes_project 12 114674882 114674941 - Mir6941 miRNA miRNA MGP_C3HHeJ_T0035451.1 MGP_C3HHeJ_G0019779.1 mouse_genomes_project 12 103670621 103713265 - MGP_C3HHeJ_P0035451 Gm28051 protein_coding protein_coding MGP_C3HHeJ_T0035290.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89303655 89870312 + Nrxn3 protein_coding retained_intron MGP_C3HHeJ_T0035291.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89303667 89443698 + Nrxn3 protein_coding retained_intron MGP_C3HHeJ_T0035292.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89303765 90985599 + MGP_C3HHeJ_P0035292 Nrxn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035293.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89303888 90985618 + MGP_C3HHeJ_P0035293 Nrxn3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035294.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89305816 89378567 + Nrxn3 protein_coding processed_transcript MGP_C3HHeJ_T0035295.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89306488 89378433 + Nrxn3 protein_coding processed_transcript MGP_C3HHeJ_T0035296.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89377291 89446457 + MGP_C3HHeJ_P0035296 Nrxn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035297.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89377955 90987656 + MGP_C3HHeJ_P0035297 Nrxn3 protein_coding protein_coding MGP_C3HHeJ_T0035298.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89378890 89446580 + Nrxn3 protein_coding processed_transcript MGP_C3HHeJ_T0035299.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89550585 89792664 + Nrxn3 protein_coding processed_transcript MGP_C3HHeJ_T0035300.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89550594 90985781 + MGP_C3HHeJ_P0035300 Nrxn3 protein_coding protein_coding MGP_C3HHeJ_T0035301.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 89798450 90985131 + MGP_C3HHeJ_P0035301 Nrxn3 protein_coding protein_coding MGP_C3HHeJ_T0035302.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 90442144 90985620 + MGP_C3HHeJ_P0035302 Nrxn3 protein_coding protein_coding MGP_C3HHeJ_T0035303.1 MGP_C3HHeJ_G0019738.1 mouse_genomes_project 12 90442144 90986164 + MGP_C3HHeJ_P0035303 Nrxn3 protein_coding protein_coding MGP_C3HHeJ_T0012674.1 MGP_C3HHeJ_G0010778.1 mouse_genomes_project 12 48347643 48348638 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035776.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114382614 114402828 - MGP_C3HHeJ_P0035776 Akt1 protein_coding protein_coding MGP_C3HHeJ_T0035777.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114383460 114400282 - MGP_C3HHeJ_P0035777 Akt1 protein_coding protein_coding MGP_C3HHeJ_T0035778.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114384645 114385715 - Akt1 protein_coding retained_intron MGP_C3HHeJ_T0035779.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114385835 114388384 - Akt1 protein_coding retained_intron MGP_C3HHeJ_T0035780.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114386303 114387889 - Akt1 protein_coding retained_intron MGP_C3HHeJ_T0035781.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114387171 114403436 - MGP_C3HHeJ_P0035781 Akt1 protein_coding protein_coding MGP_C3HHeJ_T0035782.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114387906 114402649 - MGP_C3HHeJ_P0035782 Akt1 protein_coding protein_coding MGP_C3HHeJ_T0035783.1 MGP_C3HHeJ_G0019899.1 mouse_genomes_project 12 114388012 114396851 - Akt1 protein_coding processed_transcript MGP_C3HHeJ_T0097851.1 MGP_C3HHeJ_G0036063.1 mouse_genomes_project 12 54645556 54646526 + pseudogene pseudogene MGP_C3HHeJ_T0000227.1 MGP_C3HHeJ_G0000177.1 mouse_genomes_project 12 115884326 115884757 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0009693.1 MGP_C3HHeJ_G0007826.1 mouse_genomes_project 12 477570 477633 + Gm26050 miRNA miRNA MGP_C3HHeJ_T0034254.1 MGP_C3HHeJ_G0019378.1 mouse_genomes_project 12 22332903 22344377 + MGP_C3HHeJ_P0034254 Klf11 protein_coding protein_coding MGP_C3HHeJ_T0034255.1 MGP_C3HHeJ_G0019378.1 mouse_genomes_project 12 22333428 22336655 + MGP_C3HHeJ_P0034255 Klf11 protein_coding protein_coding MGP_C3HHeJ_T0034256.1 MGP_C3HHeJ_G0019378.1 mouse_genomes_project 12 22333428 22335326 + MGP_C3HHeJ_P0034256 Klf11 protein_coding protein_coding MGP_C3HHeJ_T0034257.1 MGP_C3HHeJ_G0019378.1 mouse_genomes_project 12 22333685 22336650 + MGP_C3HHeJ_P0034257 Klf11 protein_coding protein_coding MGP_C3HHeJ_T0098841.1 MGP_C3HHeJ_G0037035.1 mouse_genomes_project 12 51218254 51218361 - Gm23296 snRNA snRNA MGP_C3HHeJ_T0034705.1 MGP_C3HHeJ_G0019550.1 mouse_genomes_project 12 69620423 69716197 - MGP_C3HHeJ_P0034705 Nin protein_coding protein_coding MGP_C3HHeJ_T0034706.1 MGP_C3HHeJ_G0019550.1 mouse_genomes_project 12 69627718 69716218 - MGP_C3HHeJ_P0034706 Nin protein_coding protein_coding MGP_C3HHeJ_T0034707.1 MGP_C3HHeJ_G0019550.1 mouse_genomes_project 12 69627719 69725285 - MGP_C3HHeJ_P0034707 Nin protein_coding protein_coding MGP_C3HHeJ_T0034708.1 MGP_C3HHeJ_G0019550.1 mouse_genomes_project 12 69627739 69725280 - MGP_C3HHeJ_P0034708 Nin protein_coding protein_coding MGP_C3HHeJ_T0000829.1 MGP_C3HHeJ_G0000770.1 mouse_genomes_project 12 59970767 59982116 + TEC TEC MGP_C3HHeJ_T0000064.1 MGP_C3HHeJ_G0000051.1 mouse_genomes_project 12 115807813 115808318 - MGP_C3HHeJ_P0000064 Ighv7-1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035079.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449068 84479093 + MGP_C3HHeJ_P0035079 Ptgr2 protein_coding protein_coding MGP_C3HHeJ_T0035080.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449201 84467381 + Ptgr2 protein_coding retained_intron MGP_C3HHeJ_T0035081.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449210 84473311 + MGP_C3HHeJ_P0035081 Ptgr2 protein_coding protein_coding MGP_C3HHeJ_T0035082.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449217 84461724 + Ptgr2 protein_coding retained_intron MGP_C3HHeJ_T0035083.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449220 84471790 + Ptgr2 protein_coding processed_transcript MGP_C3HHeJ_T0035084.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449235 84469437 + Ptgr2 protein_coding processed_transcript MGP_C3HHeJ_T0035085.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449236 84477363 + MGP_C3HHeJ_P0035085 Ptgr2 protein_coding protein_coding MGP_C3HHeJ_T0035086.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449242 84478115 + MGP_C3HHeJ_P0035086 Ptgr2 protein_coding protein_coding MGP_C3HHeJ_T0035087.1 MGP_C3HHeJ_G0019674.1 mouse_genomes_project 12 84449249 84477363 + MGP_C3HHeJ_P0035087 Ptgr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0017079.1 MGP_C3HHeJ_G0014991.1 mouse_genomes_project 12 70975924 70981446 - 4930474H06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0035871.1 MGP_C3HHeJ_G0019931.1 mouse_genomes_project 12 121183198 121189450 + MGP_C3HHeJ_P0035871 Sp8 protein_coding protein_coding MGP_C3HHeJ_T0009739.1 MGP_C3HHeJ_G0007872.1 mouse_genomes_project 12 110194326 110194403 - Gm23872 miRNA miRNA MGP_C3HHeJ_T0017090.1 MGP_C3HHeJ_G0014999.1 mouse_genomes_project 12 103623542 103679145 - Gm28373 processed_transcript processed_transcript MGP_C3HHeJ_T0006356.1 MGP_C3HHeJ_G0005288.1 mouse_genomes_project 12 80980290 80981308 - 1700052I22Rik lincRNA lincRNA MGP_C3HHeJ_T0034550.1 MGP_C3HHeJ_G0019492.1 mouse_genomes_project 12 54190976 54226993 + MGP_C3HHeJ_P0034550 Psma6 protein_coding protein_coding MGP_C3HHeJ_T0034551.1 MGP_C3HHeJ_G0019492.1 mouse_genomes_project 12 54206515 54227137 + MGP_C3HHeJ_P0034551 Psma6 protein_coding protein_coding MGP_C3HHeJ_T0034552.1 MGP_C3HHeJ_G0019492.1 mouse_genomes_project 12 54206535 54227124 + MGP_C3HHeJ_P0034552 Psma6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034553.1 MGP_C3HHeJ_G0019492.1 mouse_genomes_project 12 54215123 54220006 + Psma6 protein_coding processed_transcript MGP_C3HHeJ_T0100075.1 MGP_C3HHeJ_G0038269.1 mouse_genomes_project 12 39612005 39612137 - Gm25497 snoRNA snoRNA MGP_C3HHeJ_T0034462.1 MGP_C3HHeJ_G0019452.1 mouse_genomes_project 12 38531931 38657325 - MGP_C3HHeJ_P0034462 Zfp277 protein_coding protein_coding MGP_C3HHeJ_T0034463.1 MGP_C3HHeJ_G0019452.1 mouse_genomes_project 12 38532443 38657304 - MGP_C3HHeJ_P0034463 Zfp277 protein_coding protein_coding MGP_C3HHeJ_T0009803.1 MGP_C3HHeJ_G0007936.1 mouse_genomes_project 12 111249707 111249787 - Gm24321 miRNA miRNA MGP_C3HHeJ_T0098859.1 MGP_C3HHeJ_G0037053.1 mouse_genomes_project 12 76313823 76313897 - Gm25563 snRNA snRNA MGP_C3HHeJ_T0003350.1 MGP_C3HHeJ_G0003078.1 mouse_genomes_project 12 103554502 103560339 + Gm20069 antisense antisense MGP_C3HHeJ_T0034825.1 MGP_C3HHeJ_G0019590.1 mouse_genomes_project 12 75261168 75266232 - MGP_C3HHeJ_P0034825 Gphb5 protein_coding protein_coding MGP_C3HHeJ_T0100096.1 MGP_C3HHeJ_G0038290.1 mouse_genomes_project 12 82837128 82837265 - Gm22149 snoRNA snoRNA MGP_C3HHeJ_T0035516.1 MGP_C3HHeJ_G0019802.1 mouse_genomes_project 12 104736135 104747612 - MGP_C3HHeJ_P0035516 protein_coding protein_coding MGP_C3HHeJ_T0017071.1 MGP_C3HHeJ_G0014988.1 mouse_genomes_project 12 31076677 31114935 - F730043M19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017072.1 MGP_C3HHeJ_G0014988.1 mouse_genomes_project 12 31090863 31114258 - F730043M19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017073.1 MGP_C3HHeJ_G0014988.1 mouse_genomes_project 12 31100505 31114935 - F730043M19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017074.1 MGP_C3HHeJ_G0014988.1 mouse_genomes_project 12 31102208 31114946 - F730043M19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017075.1 MGP_C3HHeJ_G0014988.1 mouse_genomes_project 12 31102942 31107185 - F730043M19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017076.1 MGP_C3HHeJ_G0014988.1 mouse_genomes_project 12 31114493 31114945 - F730043M19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0035694.1 MGP_C3HHeJ_G0019870.1 mouse_genomes_project 12 112770431 112819341 - MGP_C3HHeJ_P0035694 4930595D18Rik protein_coding protein_coding MGP_C3HHeJ_T0009774.1 MGP_C3HHeJ_G0007907.1 mouse_genomes_project 12 111220041 111220138 + Mir329 miRNA miRNA MGP_C3HHeJ_T0035330.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92455683 92499060 - MGP_C3HHeJ_P0035330 Sel1l protein_coding protein_coding MGP_C3HHeJ_T0035331.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92455683 92499060 - MGP_C3HHeJ_P0035331 Sel1l protein_coding protein_coding MGP_C3HHeJ_T0035332.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92455705 92463808 - Sel1l protein_coding processed_transcript MGP_C3HHeJ_T0035333.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92456259 92499032 - MGP_C3HHeJ_P0035333 Sel1l protein_coding protein_coding MGP_C3HHeJ_T0035334.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92458281 92499033 - Sel1l protein_coding retained_intron MGP_C3HHeJ_T0035335.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92465366 92468112 - Sel1l protein_coding retained_intron MGP_C3HHeJ_T0035336.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92469842 92499033 - Sel1l protein_coding retained_intron MGP_C3HHeJ_T0035337.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92474767 92481865 - Sel1l protein_coding retained_intron MGP_C3HHeJ_T0035338.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92482105 92499042 - Sel1l protein_coding retained_intron MGP_C3HHeJ_T0035339.1 MGP_C3HHeJ_G0019744.1 mouse_genomes_project 12 92491397 92499043 - Sel1l protein_coding retained_intron MGP_C3HHeJ_T0012670.1 MGP_C3HHeJ_G0010774.1 mouse_genomes_project 12 11126583 11127575 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034171.1 MGP_C3HHeJ_G0019348.1 mouse_genomes_project 12 8545948 8662512 - MGP_C3HHeJ_P0034171 Vsnl1 protein_coding protein_coding MGP_C3HHeJ_T0035770.1 MGP_C3HHeJ_G0019895.1 mouse_genomes_project 12 114218417 114230101 - MGP_C3HHeJ_P0035770 Tmem179 protein_coding protein_coding MGP_C3HHeJ_T0100078.1 MGP_C3HHeJ_G0038272.1 mouse_genomes_project 12 44343951 44344158 + Gm24948 snoRNA snoRNA MGP_C3HHeJ_T0035283.1 MGP_C3HHeJ_G0019732.1 mouse_genomes_project 12 87797935 87820601 - MGP_C3HHeJ_P0035283 Snw1 protein_coding protein_coding MGP_C3HHeJ_T0034862.1 MGP_C3HHeJ_G0019600.1 mouse_genomes_project 12 76262401 76289944 + MGP_C3HHeJ_P0034862 Zbtb1 protein_coding protein_coding MGP_C3HHeJ_T0003347.1 MGP_C3HHeJ_G0003076.1 mouse_genomes_project 12 100133995 100156794 + 3300002A11Rik antisense antisense MGP_C3HHeJ_T0003348.1 MGP_C3HHeJ_G0003076.1 mouse_genomes_project 12 100140114 100156794 + 3300002A11Rik antisense antisense MGP_C3HHeJ_T0098274.1 MGP_C3HHeJ_G0036486.1 mouse_genomes_project 12 106240878 106241153 - Scarna13 scaRNA scaRNA MGP_C3HHeJ_T0034709.1 MGP_C3HHeJ_G0019551.1 mouse_genomes_project 12 69768560 69801048 + Abhd12b protein_coding retained_intron MGP_C3HHeJ_T0034710.1 MGP_C3HHeJ_G0019551.1 mouse_genomes_project 12 69768575 69801588 + MGP_C3HHeJ_P0034710 Abhd12b protein_coding protein_coding MGP_C3HHeJ_T0034711.1 MGP_C3HHeJ_G0019551.1 mouse_genomes_project 12 69768575 69801588 + MGP_C3HHeJ_P0034711 Abhd12b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034712.1 MGP_C3HHeJ_G0019551.1 mouse_genomes_project 12 69768575 69801588 + MGP_C3HHeJ_P0034712 Abhd12b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034713.1 MGP_C3HHeJ_G0019551.1 mouse_genomes_project 12 69768575 69801588 + MGP_C3HHeJ_P0034713 Abhd12b protein_coding protein_coding MGP_C3HHeJ_T0034714.1 MGP_C3HHeJ_G0019551.1 mouse_genomes_project 12 69799748 69801048 + Abhd12b protein_coding retained_intron MGP_C3HHeJ_T0000312.1 MGP_C3HHeJ_G0000262.1 mouse_genomes_project 12 58256805 58256874 + mt-Ti Mt_tRNA Mt_tRNA MGP_C3HHeJ_T0006426.1 MGP_C3HHeJ_G0005332.1 mouse_genomes_project 12 114700401 114704569 - Gm26583 lincRNA lincRNA MGP_C3HHeJ_T0012706.1 MGP_C3HHeJ_G0010810.1 mouse_genomes_project 12 92544136 92544514 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009780.1 MGP_C3HHeJ_G0007913.1 mouse_genomes_project 12 111225289 111225352 + Mir495 miRNA miRNA MGP_C3HHeJ_T0011225.1 MGP_C3HHeJ_G0009358.1 mouse_genomes_project 12 1229203 1229490 + Gm22343 misc_RNA misc_RNA MGP_C3HHeJ_T0003343.1 MGP_C3HHeJ_G0003072.1 mouse_genomes_project 12 85122240 85123331 + Gm17139 antisense antisense MGP_C3HHeJ_T0017111.1 MGP_C3HHeJ_G0015003.1 mouse_genomes_project 12 118350405 118385027 - Gm20658 processed_transcript processed_transcript MGP_C3HHeJ_T0017112.1 MGP_C3HHeJ_G0015003.1 mouse_genomes_project 12 118350428 118385142 - Gm20658 processed_transcript processed_transcript MGP_C3HHeJ_T0035702.1 MGP_C3HHeJ_G0019874.1 mouse_genomes_project 12 113051347 113056624 + MGP_C3HHeJ_P0035702 A230065H16Rik protein_coding protein_coding MGP_C3HHeJ_T0012669.1 MGP_C3HHeJ_G0010773.1 mouse_genomes_project 12 5907224 5910485 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034266.1 MGP_C3HHeJ_G0019380.1 mouse_genomes_project 12 22385282 22391191 + MGP_C3HHeJ_P0034266 Rrm2 protein_coding protein_coding MGP_C3HHeJ_T0034267.1 MGP_C3HHeJ_G0019380.1 mouse_genomes_project 12 22385597 22386631 + Rrm2 protein_coding retained_intron MGP_C3HHeJ_T0034268.1 MGP_C3HHeJ_G0019380.1 mouse_genomes_project 12 22386070 22390384 + MGP_C3HHeJ_P0034268 Rrm2 protein_coding protein_coding MGP_C3HHeJ_T0009753.1 MGP_C3HHeJ_G0007886.1 mouse_genomes_project 12 111092767 111092858 + Mir431 miRNA miRNA MGP_C3HHeJ_T0034081.1 MGP_C3HHeJ_G0019313.1 mouse_genomes_project 12 1025574 1046023 - MGP_C3HHeJ_P0034081 Cenpo protein_coding protein_coding MGP_C3HHeJ_T0034082.1 MGP_C3HHeJ_G0019313.1 mouse_genomes_project 12 1027392 1061157 - MGP_C3HHeJ_P0034082 Cenpo protein_coding protein_coding MGP_C3HHeJ_T0034084.1 MGP_C3HHeJ_G0019313.1 mouse_genomes_project 12 1042958 1045983 - Cenpo protein_coding retained_intron MGP_C3HHeJ_T0034085.1 MGP_C3HHeJ_G0019313.1 mouse_genomes_project 12 1043970 1060970 - MGP_C3HHeJ_P0034085 Cenpo protein_coding protein_coding MGP_C3HHeJ_T0034086.1 MGP_C3HHeJ_G0019313.1 mouse_genomes_project 12 1044834 1059195 - MGP_C3HHeJ_P0034086 Cenpo protein_coding protein_coding MGP_C3HHeJ_T0034087.1 MGP_C3HHeJ_G0019313.1 mouse_genomes_project 12 1045168 1061130 - Cenpo protein_coding retained_intron MGP_C3HHeJ_T0035655.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112156593 112230280 + MGP_C3HHeJ_P0035655 Dync1h1 protein_coding protein_coding MGP_C3HHeJ_T0035656.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112196704 112197717 + Dync1h1 protein_coding retained_intron MGP_C3HHeJ_T0035657.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112217613 112221610 + MGP_C3HHeJ_P0035657 Dync1h1 protein_coding protein_coding MGP_C3HHeJ_T0035658.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112219845 112220784 + Dync1h1 protein_coding retained_intron MGP_C3HHeJ_T0035659.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112222534 112223293 + Dync1h1 protein_coding retained_intron MGP_C3HHeJ_T0035660.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112223977 112224787 + Dync1h1 protein_coding retained_intron MGP_C3HHeJ_T0035661.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112224250 112224818 + Dync1h1 protein_coding retained_intron MGP_C3HHeJ_T0035662.1 MGP_C3HHeJ_G0019860.1 mouse_genomes_project 12 112226505 112228193 + Dync1h1 protein_coding retained_intron MGP_C3HHeJ_T0003304.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 3835 9755 + Rab10os antisense antisense MGP_C3HHeJ_T0003305.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 3857 6618 + Rab10os antisense antisense MGP_C3HHeJ_T0003306.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 3857 18722 + Rab10os antisense antisense MGP_C3HHeJ_T0003307.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 4121 18721 + Rab10os antisense antisense MGP_C3HHeJ_T0003308.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 4162 7579 + Rab10os antisense antisense MGP_C3HHeJ_T0003309.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 4245 18289 + Rab10os antisense antisense MGP_C3HHeJ_T0003310.1 MGP_C3HHeJ_G0003045.1 mouse_genomes_project 12 4946 18344 + Rab10os antisense antisense MGP_C3HHeJ_T0034239.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18898738 18950029 - MGP_C3HHeJ_P0034239 Adam17 protein_coding protein_coding MGP_C3HHeJ_T0034240.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18898746 18950068 - MGP_C3HHeJ_P0034240 Adam17 protein_coding protein_coding MGP_C3HHeJ_T0034241.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18898746 18950029 - MGP_C3HHeJ_P0034241 Adam17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034242.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18898746 18950029 - MGP_C3HHeJ_P0034242 Adam17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034243.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18900754 18904542 - Adam17 protein_coding processed_transcript MGP_C3HHeJ_T0034244.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18903239 18921638 - Adam17 protein_coding retained_intron MGP_C3HHeJ_T0034245.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18905324 18907771 - Adam17 protein_coding retained_intron MGP_C3HHeJ_T0034246.1 MGP_C3HHeJ_G0019373.1 mouse_genomes_project 12 18927298 18949970 - MGP_C3HHeJ_P0034246 Adam17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034988.1 MGP_C3HHeJ_G0019651.1 mouse_genomes_project 12 81952117 82097326 + MGP_C3HHeJ_P0034988 Pcnx protein_coding protein_coding MGP_C3HHeJ_T0034989.1 MGP_C3HHeJ_G0019651.1 mouse_genomes_project 12 81952459 82097328 + MGP_C3HHeJ_P0034989 Pcnx protein_coding unknown_likely_coding MGP_C3HHeJ_T0035455.1 MGP_C3HHeJ_G0019782.1 mouse_genomes_project 12 103698200 103702002 + MGP_C3HHeJ_P0035455 Tmem251 protein_coding protein_coding MGP_C3HHeJ_T0035184.1 MGP_C3HHeJ_G0019707.1 mouse_genomes_project 12 85990442 86062542 + MGP_C3HHeJ_P0035184 Mfsd7c protein_coding protein_coding MGP_C3HHeJ_T0034389.1 MGP_C3HHeJ_G0019423.1 mouse_genomes_project 12 31365312 31372596 + MGP_C3HHeJ_P0034389 Efcab10 protein_coding protein_coding MGP_C3HHeJ_T0012728.1 MGP_C3HHeJ_G0010832.1 mouse_genomes_project 12 116004620 116004931 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035800.1 MGP_C3HHeJ_G0019908.1 mouse_genomes_project 12 114688508 114696133 - MGP_C3HHeJ_P0035800 Nudt14 protein_coding protein_coding MGP_C3HHeJ_T0035259.1 MGP_C3HHeJ_G0019728.1 mouse_genomes_project 12 87623562 87646567 - MGP_C3HHeJ_P0035259 Ism2 protein_coding protein_coding MGP_C3HHeJ_T0035260.1 MGP_C3HHeJ_G0019728.1 mouse_genomes_project 12 87624606 87631984 - MGP_C3HHeJ_P0035260 Ism2 protein_coding protein_coding MGP_C3HHeJ_T0035261.1 MGP_C3HHeJ_G0019728.1 mouse_genomes_project 12 87627296 87631920 - Ism2 protein_coding processed_transcript MGP_C3HHeJ_T0009778.1 MGP_C3HHeJ_G0007911.1 mouse_genomes_project 12 111223620 111223719 + Mir666 miRNA miRNA MGP_C3HHeJ_T0035720.1 MGP_C3HHeJ_G0019880.1 mouse_genomes_project 12 113331003 113333986 - MGP_C3HHeJ_P0035720 Ckb protein_coding protein_coding MGP_C3HHeJ_T0006333.1 MGP_C3HHeJ_G0005270.1 mouse_genomes_project 12 31076928 31106509 + Gm16267 lincRNA lincRNA MGP_C3HHeJ_T0034419.1 MGP_C3HHeJ_G0019442.1 mouse_genomes_project 12 34502634 34816779 + MGP_C3HHeJ_P0034419 Ispd protein_coding protein_coding MGP_C3HHeJ_T0034807.1 MGP_C3HHeJ_G0019581.1 mouse_genomes_project 12 73290956 73294238 - MGP_C3HHeJ_P0034807 Tmem30b protein_coding protein_coding MGP_C3HHeJ_T0035066.1 MGP_C3HHeJ_G0019670.1 mouse_genomes_project 12 84255992 84266680 + MGP_C3HHeJ_P0035066 Acot6 protein_coding protein_coding MGP_C3HHeJ_T0012685.1 MGP_C3HHeJ_G0010789.1 mouse_genomes_project 12 60614053 60614581 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035552.1 MGP_C3HHeJ_G0019828.1 mouse_genomes_project 12 106396979 106437521 + MGP_C3HHeJ_P0035552 Tcl1b1 protein_coding protein_coding MGP_C3HHeJ_T0009705.1 MGP_C3HHeJ_G0007838.1 mouse_genomes_project 12 38436253 38436353 - Mir1938 miRNA miRNA MGP_C3HHeJ_T0009800.1 MGP_C3HHeJ_G0007933.1 mouse_genomes_project 12 111245668 111245747 + Mir496a miRNA miRNA MGP_C3HHeJ_T0034788.1 MGP_C3HHeJ_G0019574.1 mouse_genomes_project 12 72645965 72650964 + MGP_C3HHeJ_P0034788 Six6 protein_coding protein_coding MGP_C3HHeJ_T0000014.1 MGP_C3HHeJ_G0000010.1 mouse_genomes_project 12 115205486 115209647 - MGP_C3HHeJ_P0000014 Ighm IG_C_gene IG_C_gene MGP_C3HHeJ_T0000015.1 MGP_C3HHeJ_G0000010.1 mouse_genomes_project 12 115207657 115209647 - MGP_C3HHeJ_P0000015 Ighm IG_C_gene IG_C_gene MGP_C3HHeJ_T0035840.1 MGP_C3HHeJ_G0000010.1 mouse_genomes_project 12 115205754 115209573 - MGP_C3HHeJ_P0035840 Ighm IG_C_gene unknown_likely_coding MGP_C3HHeJ_T0006367.1 MGP_C3HHeJ_G0005299.1 mouse_genomes_project 12 99979623 99981030 + Gm28933 lincRNA lincRNA MGP_C3HHeJ_T0009773.1 MGP_C3HHeJ_G0007906.1 mouse_genomes_project 12 111219370 111219451 + Mir758 miRNA miRNA MGP_C3HHeJ_T0009784.1 MGP_C3HHeJ_G0007917.1 mouse_genomes_project 12 111230001 111230083 + Mir376b miRNA miRNA MGP_C3HHeJ_T0035545.1 MGP_C3HHeJ_G0019822.1 mouse_genomes_project 12 105870604 105936175 - MGP_C3HHeJ_P0035545 Dicer1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003349.1 MGP_C3HHeJ_G0003077.1 mouse_genomes_project 12 103048632 103050733 - Gm16339 antisense antisense MGP_C3HHeJ_T0000008.1 MGP_C3HHeJ_G0000006.1 mouse_genomes_project 12 115081423 115083072 - MGP_C3HHeJ_P0000008 Ighg2b IG_C_gene IG_C_gene MGP_C3HHeJ_T0009702.1 MGP_C3HHeJ_G0007835.1 mouse_genomes_project 12 33277267 33277354 - Mir680-3 miRNA miRNA MGP_C3HHeJ_T0035267.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87773855 87777455 - Alkbh1 protein_coding processed_transcript MGP_C3HHeJ_T0035268.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87774184 87791845 - MGP_C3HHeJ_P0035268 Alkbh1 protein_coding protein_coding MGP_C3HHeJ_T0035269.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87776092 87791832 - MGP_C3HHeJ_P0035269 Alkbh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035270.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87776092 87791834 - MGP_C3HHeJ_P0035270 Alkbh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035271.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87776095 87791842 - MGP_C3HHeJ_P0035271 Alkbh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035272.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87776827 87791834 - MGP_C3HHeJ_P0035272 Alkbh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035273.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87777138 87786575 - MGP_C3HHeJ_P0035273 Alkbh1 protein_coding protein_coding MGP_C3HHeJ_T0035274.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87779447 87789742 - Alkbh1 protein_coding processed_transcript MGP_C3HHeJ_T0035275.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87781263 87791839 - MGP_C3HHeJ_P0035275 Alkbh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035276.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87781274 87791845 - Alkbh1 protein_coding retained_intron MGP_C3HHeJ_T0035277.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87790688 87792023 - Alkbh1 protein_coding retained_intron MGP_C3HHeJ_T0035278.1 MGP_C3HHeJ_G0019730.1 mouse_genomes_project 12 87791516 87791924 - MGP_C3HHeJ_P0035278 Alkbh1 protein_coding protein_coding MGP_C3HHeJ_T0034252.1 MGP_C3HHeJ_G0019377.1 mouse_genomes_project 12 22255240 22300379 + MGP_C3HHeJ_P0034252 Grhl1 protein_coding protein_coding MGP_C3HHeJ_T0034253.1 MGP_C3HHeJ_G0019377.1 mouse_genomes_project 12 22263616 22300383 + MGP_C3HHeJ_P0034253 Grhl1 protein_coding protein_coding MGP_C3HHeJ_T0035491.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104416928 104422920 + MGP_C3HHeJ_P0035491 Ifi27 protein_coding protein_coding MGP_C3HHeJ_T0035492.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104416928 104422920 + MGP_C3HHeJ_P0035492 Ifi27 protein_coding protein_coding MGP_C3HHeJ_T0035493.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104416928 104422920 + MGP_C3HHeJ_P0035493 Ifi27 protein_coding protein_coding MGP_C3HHeJ_T0035494.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104416929 104422952 + MGP_C3HHeJ_P0035494 Ifi27 protein_coding protein_coding MGP_C3HHeJ_T0035495.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104416962 104420349 + Ifi27 protein_coding retained_intron MGP_C3HHeJ_T0035496.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104416976 104422952 + MGP_C3HHeJ_P0035496 Ifi27 protein_coding protein_coding MGP_C3HHeJ_T0035497.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104417002 104419686 + Ifi27 protein_coding retained_intron MGP_C3HHeJ_T0035498.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104417009 104420241 + MGP_C3HHeJ_P0035498 Ifi27 protein_coding protein_coding MGP_C3HHeJ_T0035499.1 MGP_C3HHeJ_G0019794.1 mouse_genomes_project 12 104420339 104422952 + Ifi27 protein_coding retained_intron MGP_C3HHeJ_T0000257.1 MGP_C3HHeJ_G0000207.1 mouse_genomes_project 12 118258391 118258824 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034331.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29280620 29343862 + MGP_C3HHeJ_P0034331 Slc26a3 protein_coding protein_coding MGP_C3HHeJ_T0034332.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29331107 29373271 + MGP_C3HHeJ_P0034332 Slc26a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034333.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29331109 29373693 + MGP_C3HHeJ_P0034333 Slc26a3 protein_coding protein_coding MGP_C3HHeJ_T0034334.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29331109 29345739 + MGP_C3HHeJ_P0034334 Slc26a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034335.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29331123 29345754 + Slc26a3 protein_coding retained_intron MGP_C3HHeJ_T0034336.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29340311 29347935 + Slc26a3 protein_coding retained_intron MGP_C3HHeJ_T0034337.1 MGP_C3HHeJ_G0019408.1 mouse_genomes_project 12 29370681 29371627 + MGP_C3HHeJ_P0034337 Slc26a3 protein_coding protein_coding MGP_C3HHeJ_T0009750.1 MGP_C3HHeJ_G0007883.1 mouse_genomes_project 12 111087844 111087938 + Mir665 miRNA miRNA MGP_C3HHeJ_T0034525.1 MGP_C3HHeJ_G0019482.1 mouse_genomes_project 12 53578297 53582353 - MGP_C3HHeJ_P0034525 Cfl2 protein_coding protein_coding MGP_C3HHeJ_T0000033.1 MGP_C3HHeJ_G0000027.1 mouse_genomes_project 12 115216064 115216112 - MGP_C3HHeJ_P0000033 Ighj2 IG_J_gene IG_J_gene MGP_C3HHeJ_T0000034.1 MGP_C3HHeJ_G0000027.1 mouse_genomes_project 12 115216110 115216164 - Ighj2 IG_J_gene processed_transcript MGP_C3HHeJ_T0034689.1 MGP_C3HHeJ_G0019543.1 mouse_genomes_project 12 69269908 69307454 - MGP_C3HHeJ_P0034689 L2hgdh protein_coding protein_coding MGP_C3HHeJ_T0035569.1 MGP_C3HHeJ_G0019836.1 mouse_genomes_project 12 106982741 107001858 + MGP_C3HHeJ_P0035569 Gskip protein_coding protein_coding MGP_C3HHeJ_T0034186.1 MGP_C3HHeJ_G0019358.1 mouse_genomes_project 12 14107429 14114150 + MGP_C3HHeJ_P0034186 Ntsr2 protein_coding protein_coding MGP_C3HHeJ_T0009768.1 MGP_C3HHeJ_G0007901.1 mouse_genomes_project 12 111217205 111217254 - Mir299b miRNA miRNA MGP_C3HHeJ_T0009790.1 MGP_C3HHeJ_G0007923.1 mouse_genomes_project 12 111234651 111234766 - Gm44322 miRNA miRNA MGP_C3HHeJ_T0000232.1 MGP_C3HHeJ_G0000182.1 mouse_genomes_project 12 116141777 116142210 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0012729.1 MGP_C3HHeJ_G0010833.1 mouse_genomes_project 12 116084308 116084944 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035452.1 MGP_C3HHeJ_G0019780.1 mouse_genomes_project 12 103696172 103714172 - MGP_C3HHeJ_P0035452 Gm20604 protein_coding protein_coding MGP_C3HHeJ_T0100066.1 MGP_C3HHeJ_G0038260.1 mouse_genomes_project 12 25438085 25438210 + Gm24326 snoRNA snoRNA MGP_C3HHeJ_T0017113.1 MGP_C3HHeJ_G0015004.1 mouse_genomes_project 12 119419860 119426562 - Gm10421 processed_transcript antisense MGP_C3HHeJ_T0017114.1 MGP_C3HHeJ_G0015004.1 mouse_genomes_project 12 119420702 119426616 - Gm10421 processed_transcript retained_intron MGP_C3HHeJ_T0017115.1 MGP_C3HHeJ_G0015004.1 mouse_genomes_project 12 119426436 119426998 - Gm10421 processed_transcript antisense MGP_C3HHeJ_T0012687.1 MGP_C3HHeJ_G0010791.1 mouse_genomes_project 12 62459248 62459545 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034098.1 MGP_C3HHeJ_G0019321.1 mouse_genomes_project 12 1623096 1632115 + MGP_C3HHeJ_P0034098 Pfn4 protein_coding protein_coding MGP_C3HHeJ_T0034099.1 MGP_C3HHeJ_G0019321.1 mouse_genomes_project 12 1623256 1632087 + MGP_C3HHeJ_P0034099 Pfn4 protein_coding protein_coding MGP_C3HHeJ_T0035513.1 MGP_C3HHeJ_G0019801.1 mouse_genomes_project 12 104690646 104697269 - MGP_C3HHeJ_P0035513 Serpina1f protein_coding protein_coding MGP_C3HHeJ_T0035514.1 MGP_C3HHeJ_G0019801.1 mouse_genomes_project 12 104692235 104698132 - MGP_C3HHeJ_P0035514 Serpina1f protein_coding protein_coding MGP_C3HHeJ_T0035515.1 MGP_C3HHeJ_G0019801.1 mouse_genomes_project 12 104692238 104697319 - MGP_C3HHeJ_P0035515 Serpina1f protein_coding protein_coding MGP_C3HHeJ_T0000025.1 MGP_C3HHeJ_G0000019.1 mouse_genomes_project 12 115231345 115231355 - MGP_C3HHeJ_P0000025 Ighd5-6 IG_D_gene IG_D_gene MGP_C3HHeJ_T0000254.1 MGP_C3HHeJ_G0000204.1 mouse_genomes_project 12 118160843 118190773 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035539.1 MGP_C3HHeJ_G0019816.1 mouse_genomes_project 12 105459090 105496720 + MGP_C3HHeJ_P0035539 Serpina3k protein_coding protein_coding MGP_C3HHeJ_T0006337.1 MGP_C3HHeJ_G0005273.1 mouse_genomes_project 12 47987178 47991050 - 1810007C17Rik lincRNA lincRNA MGP_C3HHeJ_T0009802.1 MGP_C3HHeJ_G0007935.1 mouse_genomes_project 12 111248958 111249048 + Mir541 miRNA miRNA MGP_C3HHeJ_T0000228.1 MGP_C3HHeJ_G0000178.1 mouse_genomes_project 12 115888490 115888789 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035686.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112569505 112573193 - MGP_C3HHeJ_P0035686 Ankrd9 protein_coding protein_coding MGP_C3HHeJ_T0035687.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112570578 112572408 - MGP_C3HHeJ_P0035687 Ankrd9 protein_coding protein_coding MGP_C3HHeJ_T0035688.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112570579 112573096 - MGP_C3HHeJ_P0035688 Ankrd9 protein_coding protein_coding MGP_C3HHeJ_T0035689.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112570579 112573174 - MGP_C3HHeJ_P0035689 Ankrd9 protein_coding protein_coding MGP_C3HHeJ_T0035690.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112570579 112572771 - MGP_C3HHeJ_P0035690 Ankrd9 protein_coding protein_coding MGP_C3HHeJ_T0035691.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112570581 112573148 - MGP_C3HHeJ_P0035691 Ankrd9 protein_coding protein_coding MGP_C3HHeJ_T0035692.1 MGP_C3HHeJ_G0019868.1 mouse_genomes_project 12 112572124 112572732 - Ankrd9 protein_coding processed_transcript MGP_C3HHeJ_T0034398.1 MGP_C3HHeJ_G0019430.1 mouse_genomes_project 12 33040891 33042567 + MGP_C3HHeJ_P0034398 Prps1l1 protein_coding protein_coding MGP_C3HHeJ_T0034851.1 MGP_C3HHeJ_G0019596.1 mouse_genomes_project 12 76087822 76134086 - MGP_C3HHeJ_P0034851 Tex21 protein_coding protein_coding MGP_C3HHeJ_T0009721.1 MGP_C3HHeJ_G0007854.1 mouse_genomes_project 12 81237755 81237839 + Mir3067 miRNA miRNA MGP_C3HHeJ_T0098830.1 MGP_C3HHeJ_G0037024.1 mouse_genomes_project 12 1861539 1861642 - Gm23167 snRNA snRNA MGP_C3HHeJ_T0012676.1 MGP_C3HHeJ_G0010780.1 mouse_genomes_project 12 50339519 50339830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035795.1 MGP_C3HHeJ_G0019904.1 mouse_genomes_project 12 114544164 114551351 + MGP_C3HHeJ_P0035795 BC022687 protein_coding protein_coding MGP_C3HHeJ_T0035796.1 MGP_C3HHeJ_G0019904.1 mouse_genomes_project 12 114544164 114551892 + MGP_C3HHeJ_P0035796 BC022687 protein_coding protein_coding MGP_C3HHeJ_T0034588.1 MGP_C3HHeJ_G0019508.1 mouse_genomes_project 12 57187650 57192192 - MGP_C3HHeJ_P0034588 Clec14a protein_coding protein_coding MGP_C3HHeJ_T0034875.1 MGP_C3HHeJ_G0019608.1 mouse_genomes_project 12 76695931 76699153 - MGP_C3HHeJ_P0034875 protein_coding protein_coding MGP_C3HHeJ_T0035255.1 MGP_C3HHeJ_G0019726.1 mouse_genomes_project 12 87582623 87610980 - MGP_C3HHeJ_P0035255 Vipas39 protein_coding protein_coding MGP_C3HHeJ_T0035256.1 MGP_C3HHeJ_G0019726.1 mouse_genomes_project 12 87582623 87608938 - MGP_C3HHeJ_P0035256 Vipas39 protein_coding protein_coding MGP_C3HHeJ_T0035257.1 MGP_C3HHeJ_G0019726.1 mouse_genomes_project 12 87582623 87610980 - MGP_C3HHeJ_P0035257 Vipas39 protein_coding protein_coding MGP_C3HHeJ_T0003317.1 MGP_C3HHeJ_G0003050.1 mouse_genomes_project 12 29386971 29387903 + Gm29542 antisense antisense MGP_C3HHeJ_T0035409.1 MGP_C3HHeJ_G0019765.1 mouse_genomes_project 12 101771144 101890813 - MGP_C3HHeJ_P0035409 Ccdc88c protein_coding protein_coding MGP_C3HHeJ_T0035410.1 MGP_C3HHeJ_G0019765.1 mouse_genomes_project 12 101771144 101890813 - MGP_C3HHeJ_P0035410 Ccdc88c protein_coding protein_coding MGP_C3HHeJ_T0034258.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22347365 22363555 - MGP_C3HHeJ_P0034258 Cys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034259.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22347375 22363537 - MGP_C3HHeJ_P0034259 Cys1 protein_coding protein_coding MGP_C3HHeJ_T0034260.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22347375 22363537 - MGP_C3HHeJ_P0034260 Cys1 protein_coding protein_coding MGP_C3HHeJ_T0034261.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22347480 22362763 - MGP_C3HHeJ_P0034261 Cys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034262.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22347480 22362763 - MGP_C3HHeJ_P0034262 Cys1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034263.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22348081 22361677 - Cys1 protein_coding processed_transcript MGP_C3HHeJ_T0034264.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22348217 22362682 - MGP_C3HHeJ_P0034264 Cys1 protein_coding protein_coding MGP_C3HHeJ_T0034265.1 MGP_C3HHeJ_G0019379.1 mouse_genomes_project 12 22350146 22362459 - MGP_C3HHeJ_P0034265 Cys1 protein_coding protein_coding MGP_C3HHeJ_T0034829.1 MGP_C3HHeJ_G0019593.1 mouse_genomes_project 12 75573742 75597644 - MGP_C3HHeJ_P0034829 Sgpp1 protein_coding protein_coding MGP_C3HHeJ_T0034931.1 MGP_C3HHeJ_G0019633.1 mouse_genomes_project 12 80679707 80689157 - MGP_C3HHeJ_P0034931 protein_coding protein_coding MGP_C3HHeJ_T0100080.1 MGP_C3HHeJ_G0038274.1 mouse_genomes_project 12 49634190 49634307 + Gm22088 snoRNA snoRNA MGP_C3HHeJ_T0035531.1 MGP_C3HHeJ_G0019810.1 mouse_genomes_project 12 105233502 105238572 + MGP_C3HHeJ_P0035531 Serpina5 protein_coding protein_coding MGP_C3HHeJ_T0003357.1 MGP_C3HHeJ_G0003084.1 mouse_genomes_project 12 119510032 119619314 - Gm5441 antisense antisense MGP_C3HHeJ_T0003358.1 MGP_C3HHeJ_G0003084.1 mouse_genomes_project 12 119557856 119619324 - Gm5441 antisense antisense MGP_C3HHeJ_T0035321.1 MGP_C3HHeJ_G0019742.1 mouse_genomes_project 12 92193230 92232416 - MGP_C3HHeJ_P0035321 Gtf2a1 protein_coding protein_coding MGP_C3HHeJ_T0035322.1 MGP_C3HHeJ_G0019742.1 mouse_genomes_project 12 92198636 92232894 - MGP_C3HHeJ_P0035322 Gtf2a1 protein_coding protein_coding MGP_C3HHeJ_T0034472.1 MGP_C3HHeJ_G0019457.1 mouse_genomes_project 12 42588931 42633500 + MGP_C3HHeJ_P0034472 Pnpla8 protein_coding protein_coding MGP_C3HHeJ_T0034473.1 MGP_C3HHeJ_G0019457.1 mouse_genomes_project 12 42594837 42602420 + MGP_C3HHeJ_P0034473 Pnpla8 protein_coding protein_coding MGP_C3HHeJ_T0034474.1 MGP_C3HHeJ_G0019457.1 mouse_genomes_project 12 42602102 42628787 + MGP_C3HHeJ_P0034474 Pnpla8 protein_coding protein_coding MGP_C3HHeJ_T0034475.1 MGP_C3HHeJ_G0019457.1 mouse_genomes_project 12 42615752 42628288 + MGP_C3HHeJ_P0034475 Pnpla8 protein_coding protein_coding MGP_C3HHeJ_T0011226.1 MGP_C3HHeJ_G0009359.1 mouse_genomes_project 12 8927916 8928224 - Gm23781 misc_RNA misc_RNA MGP_C3HHeJ_T0100098.1 MGP_C3HHeJ_G0038292.1 mouse_genomes_project 12 87785699 87785835 - Mir3068 snoRNA snoRNA MGP_C3HHeJ_T0000245.1 MGP_C3HHeJ_G0000195.1 mouse_genomes_project 12 116908824 116909258 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0006340.1 MGP_C3HHeJ_G0005276.1 mouse_genomes_project 12 57911652 57927676 + Gm17529 lincRNA lincRNA MGP_C3HHeJ_T0006321.1 MGP_C3HHeJ_G0005262.1 mouse_genomes_project 12 19001573 19003262 + Gm4419 lincRNA lincRNA MGP_C3HHeJ_T0034636.1 MGP_C3HHeJ_G0019521.1 mouse_genomes_project 12 64387745 64447351 + MGP_C3HHeJ_P0034636 Fam179b protein_coding protein_coding MGP_C3HHeJ_T0034637.1 MGP_C3HHeJ_G0019521.1 mouse_genomes_project 12 64387980 64447357 + MGP_C3HHeJ_P0034637 Fam179b protein_coding unknown_likely_coding MGP_C3HHeJ_T0034096.1 MGP_C3HHeJ_G0019320.1 mouse_genomes_project 12 1593046 1622300 - MGP_C3HHeJ_P0034096 Fam228b protein_coding unknown_likely_coding MGP_C3HHeJ_T0034097.1 MGP_C3HHeJ_G0019320.1 mouse_genomes_project 12 1599377 1623069 - MGP_C3HHeJ_P0034097 Fam228b protein_coding protein_coding MGP_C3HHeJ_T0009797.1 MGP_C3HHeJ_G0007930.1 mouse_genomes_project 12 111241455 111241528 + Mir485 miRNA miRNA MGP_C3HHeJ_T0000222.1 MGP_C3HHeJ_G0000172.1 mouse_genomes_project 12 115705875 115706190 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035528.1 MGP_C3HHeJ_G0019808.1 mouse_genomes_project 12 105121758 105140598 - MGP_C3HHeJ_P0035528 Serpina9 protein_coding protein_coding MGP_C3HHeJ_T0035529.1 MGP_C3HHeJ_G0019808.1 mouse_genomes_project 12 105135211 105140701 - MGP_C3HHeJ_P0035529 Serpina9 protein_coding protein_coding MGP_C3HHeJ_T0035169.1 MGP_C3HHeJ_G0019700.1 mouse_genomes_project 12 85491835 85499859 - MGP_C3HHeJ_P0035169 Acyp1 protein_coding protein_coding MGP_C3HHeJ_T0035170.1 MGP_C3HHeJ_G0019700.1 mouse_genomes_project 12 85491846 85499730 - MGP_C3HHeJ_P0035170 Acyp1 protein_coding protein_coding MGP_C3HHeJ_T0035171.1 MGP_C3HHeJ_G0019700.1 mouse_genomes_project 12 85491984 85507369 - MGP_C3HHeJ_P0035171 Acyp1 protein_coding protein_coding MGP_C3HHeJ_T0035172.1 MGP_C3HHeJ_G0019700.1 mouse_genomes_project 12 85498316 85499842 - MGP_C3HHeJ_P0035172 Acyp1 protein_coding protein_coding MGP_C3HHeJ_T0100117.1 MGP_C3HHeJ_G0038311.1 mouse_genomes_project 12 111164300 111164372 + Gm27604 snoRNA snoRNA MGP_C3HHeJ_T0000029.1 MGP_C3HHeJ_G0000023.1 mouse_genomes_project 12 115344070 115344080 - IG_D_pseudogene IG_D_pseudogene MGP_C3HHeJ_T0035570.1 MGP_C3HHeJ_G0019837.1 mouse_genomes_project 12 107004816 107092403 + MGP_C3HHeJ_P0035570 Ak7 protein_coding protein_coding MGP_C3HHeJ_T0035752.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113659087 113754687 + MGP_C3HHeJ_P0035752 Tdrd9 protein_coding protein_coding MGP_C3HHeJ_T0035753.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113659170 113754109 + MGP_C3HHeJ_P0035753 Tdrd9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035759.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113669072 113754109 + MGP_C3HHeJ_P0035759 Tdrd9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035760.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113681111 113754179 + MGP_C3HHeJ_P0035760 Tdrd9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035761.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113681111 113754179 + MGP_C3HHeJ_P0035761 Tdrd9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035762.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113699992 113712549 + Tdrd9 protein_coding retained_intron MGP_C3HHeJ_T0035763.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113712992 113727453 + Tdrd9 protein_coding processed_transcript MGP_C3HHeJ_T0035764.1 MGP_C3HHeJ_G0019889.1 mouse_genomes_project 12 113746273 113753237 + Tdrd9 protein_coding retained_intron MGP_C3HHeJ_T0034742.1 MGP_C3HHeJ_G0019560.1 mouse_genomes_project 12 70797390 70898027 + MGP_C3HHeJ_P0034742 2700049A03Rik protein_coding protein_coding MGP_C3HHeJ_T0034743.1 MGP_C3HHeJ_G0019560.1 mouse_genomes_project 12 70797390 70898027 + MGP_C3HHeJ_P0034743 2700049A03Rik protein_coding protein_coding MGP_C3HHeJ_T0034744.1 MGP_C3HHeJ_G0019560.1 mouse_genomes_project 12 70811008 70815458 + MGP_C3HHeJ_P0034744 2700049A03Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034745.1 MGP_C3HHeJ_G0019560.1 mouse_genomes_project 12 70831018 70898023 + MGP_C3HHeJ_P0034745 2700049A03Rik protein_coding protein_coding MGP_C3HHeJ_T0035056.1 MGP_C3HHeJ_G0019662.1 mouse_genomes_project 12 84077148 84079494 + MGP_C3HHeJ_P0035056 2410016O06Rik protein_coding protein_coding MGP_C3HHeJ_T0034641.1 MGP_C3HHeJ_G0019523.1 mouse_genomes_project 12 64485934 64497425 - MGP_C3HHeJ_P0034641 Fkbp3 protein_coding protein_coding MGP_C3HHeJ_T0000023.1 MGP_C3HHeJ_G0000017.1 mouse_genomes_project 12 115217124 115217135 - MGP_C3HHeJ_P0000023 Ighd4-1 IG_D_gene IG_D_gene MGP_C3HHeJ_T0034899.1 MGP_C3HHeJ_G0019616.1 mouse_genomes_project 12 78807771 78827980 - MGP_C3HHeJ_P0034899 Atp6v1d protein_coding protein_coding MGP_C3HHeJ_T0003334.1 MGP_C3HHeJ_G0003063.1 mouse_genomes_project 12 74014129 74026222 - Gm29587 antisense antisense MGP_C3HHeJ_T0035596.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109542914 109617549 - MGP_C3HHeJ_P0035596 Setd3 protein_coding protein_coding MGP_C3HHeJ_T0035597.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109544154 109552612 - Setd3 protein_coding retained_intron MGP_C3HHeJ_T0035598.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109544526 109617456 - MGP_C3HHeJ_P0035598 Setd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035599.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109546198 109617425 - MGP_C3HHeJ_P0035599 Setd3 protein_coding protein_coding MGP_C3HHeJ_T0035600.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109549799 109552748 - Setd3 protein_coding processed_transcript MGP_C3HHeJ_T0035601.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109554701 109617498 - MGP_C3HHeJ_P0035601 Setd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035602.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109555960 109600596 - Setd3 protein_coding processed_transcript MGP_C3HHeJ_T0035603.1 MGP_C3HHeJ_G0019842.1 mouse_genomes_project 12 109595581 109617442 - MGP_C3HHeJ_P0035603 Setd3 protein_coding protein_coding MGP_C3HHeJ_T0034993.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82657535 83119488 + MGP_C3HHeJ_P0034993 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0034994.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82687945 83236254 + MGP_C3HHeJ_P0034994 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0034995.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688234 83168720 + MGP_C3HHeJ_P0034995 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0034996.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688254 83236523 + MGP_C3HHeJ_P0034996 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0034997.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688347 83237095 + MGP_C3HHeJ_P0034997 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0034998.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688809 83237651 + MGP_C3HHeJ_P0034998 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0034999.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688809 83240339 + MGP_C3HHeJ_P0034999 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035000.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688882 83236629 + MGP_C3HHeJ_P0035000 Rgs6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035001.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688897 83139131 + MGP_C3HHeJ_P0035001 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035002.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688945 83123266 + MGP_C3HHeJ_P0035002 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035003.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82688964 83236376 + MGP_C3HHeJ_P0035003 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035004.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82689159 83123204 + MGP_C3HHeJ_P0035004 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035005.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82689335 82690316 + Rgs6 protein_coding retained_intron MGP_C3HHeJ_T0035006.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82718954 83236254 + MGP_C3HHeJ_P0035006 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035007.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82718954 83215194 + MGP_C3HHeJ_P0035007 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035008.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82718954 83215194 + MGP_C3HHeJ_P0035008 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035009.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82718954 83215317 + MGP_C3HHeJ_P0035009 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035010.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82718954 83236254 + MGP_C3HHeJ_P0035010 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035011.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 82718954 83211272 + MGP_C3HHeJ_P0035011 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035012.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 83118885 83120016 + Rgs6 protein_coding retained_intron MGP_C3HHeJ_T0035013.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 83183644 83236490 + MGP_C3HHeJ_P0035013 Rgs6 protein_coding protein_coding MGP_C3HHeJ_T0035014.1 MGP_C3HHeJ_G0019654.1 mouse_genomes_project 12 83193750 83215147 + Rgs6 protein_coding retained_intron MGP_C3HHeJ_T0035279.1 MGP_C3HHeJ_G0019731.1 mouse_genomes_project 12 87791901 87800206 + MGP_C3HHeJ_P0035279 Slirp protein_coding protein_coding MGP_C3HHeJ_T0035280.1 MGP_C3HHeJ_G0019731.1 mouse_genomes_project 12 87791917 87797920 + MGP_C3HHeJ_P0035280 Slirp protein_coding protein_coding MGP_C3HHeJ_T0035281.1 MGP_C3HHeJ_G0019731.1 mouse_genomes_project 12 87791941 87797904 + MGP_C3HHeJ_P0035281 Slirp protein_coding protein_coding MGP_C3HHeJ_T0035282.1 MGP_C3HHeJ_G0019731.1 mouse_genomes_project 12 87791951 87797924 + MGP_C3HHeJ_P0035282 Slirp protein_coding protein_coding MGP_C3HHeJ_T0009725.1 MGP_C3HHeJ_G0007858.1 mouse_genomes_project 12 87611551 87611627 + miRNA miRNA MGP_C3HHeJ_T0006362.1 MGP_C3HHeJ_G0005294.1 mouse_genomes_project 12 87209867 87211028 - Gm26698 lincRNA lincRNA MGP_C3HHeJ_T0100109.1 MGP_C3HHeJ_G0038303.1 mouse_genomes_project 12 111147976 111148047 + Gm23600 snoRNA snoRNA MGP_C3HHeJ_T0035434.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103215667 103333309 + MGP_C3HHeJ_P0035434 Rin3 protein_coding protein_coding MGP_C3HHeJ_T0035435.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103215786 103304847 + MGP_C3HHeJ_P0035435 Rin3 protein_coding protein_coding MGP_C3HHeJ_T0035436.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103215787 103267250 + MGP_C3HHeJ_P0035436 Rin3 protein_coding protein_coding MGP_C3HHeJ_T0035437.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103217029 103333309 + MGP_C3HHeJ_P0035437 Rin3 protein_coding protein_coding MGP_C3HHeJ_T0035438.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103296535 103303286 + Rin3 protein_coding processed_transcript MGP_C3HHeJ_T0035439.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103296535 103310352 + Rin3 protein_coding processed_transcript MGP_C3HHeJ_T0035440.1 MGP_C3HHeJ_G0019774.1 mouse_genomes_project 12 103296570 103301011 + Rin3 protein_coding retained_intron MGP_C3HHeJ_T0035116.1 MGP_C3HHeJ_G0019681.1 mouse_genomes_project 12 84598046 84618274 - MGP_C3HHeJ_P0035116 Aldh6a1 protein_coding protein_coding MGP_C3HHeJ_T0006370.1 MGP_C3HHeJ_G0005302.1 mouse_genomes_project 12 101040719 101041546 - Gm26723 lincRNA lincRNA MGP_C3HHeJ_T0009717.1 MGP_C3HHeJ_G0007850.1 mouse_genomes_project 12 75780534 75780617 + Mir5101 miRNA miRNA MGP_C3HHeJ_T0035284.1 MGP_C3HHeJ_G0019733.1 mouse_genomes_project 12 88382650 88387411 + MGP_C3HHeJ_P0035284 protein_coding protein_coding MGP_C3HHeJ_T0034315.1 MGP_C3HHeJ_G0019402.1 mouse_genomes_project 12 28772174 28793427 - MGP_C3HHeJ_P0034315 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034316.1 MGP_C3HHeJ_G0019402.1 mouse_genomes_project 12 28773432 28793507 - MGP_C3HHeJ_P0034316 protein_coding protein_coding MGP_C3HHeJ_T0035446.1 MGP_C3HHeJ_G0019777.1 mouse_genomes_project 12 103495509 103505338 + MGP_C3HHeJ_P0035446 Chga protein_coding protein_coding MGP_C3HHeJ_T0034238.1 MGP_C3HHeJ_G0019372.1 mouse_genomes_project 12 18891623 18898835 + MGP_C3HHeJ_P0034238 Iah1 protein_coding protein_coding MGP_C3HHeJ_T0012714.1 MGP_C3HHeJ_G0010818.1 mouse_genomes_project 12 102819122 102819582 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035351.1 MGP_C3HHeJ_G0019750.1 mouse_genomes_project 12 99467417 99528577 - MGP_C3HHeJ_P0035351 Ptpn21 protein_coding protein_coding MGP_C3HHeJ_T0035352.1 MGP_C3HHeJ_G0019750.1 mouse_genomes_project 12 99467417 99531337 - MGP_C3HHeJ_P0035352 Ptpn21 protein_coding protein_coding MGP_C3HHeJ_T0034375.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31115041 31217108 + MGP_C3HHeJ_P0034375 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034376.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31115059 31217108 + MGP_C3HHeJ_P0034376 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034377.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31115102 31342215 + MGP_C3HHeJ_P0034377 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034378.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31115111 31345079 + MGP_C3HHeJ_P0034378 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034379.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31115122 31293962 + MGP_C3HHeJ_P0034379 Atxn7l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034380.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31115153 31296678 + Atxn7l1 protein_coding retained_intron MGP_C3HHeJ_T0034381.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31268297 31336756 + MGP_C3HHeJ_P0034381 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034382.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31282127 31313479 + MGP_C3HHeJ_P0034382 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034383.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31282139 31296678 + Atxn7l1 protein_coding retained_intron MGP_C3HHeJ_T0034384.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31282250 31293892 + MGP_C3HHeJ_P0034384 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034385.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31283247 31340840 + MGP_C3HHeJ_P0034385 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034386.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31283255 31294033 + Atxn7l1 protein_coding retained_intron MGP_C3HHeJ_T0034387.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31313843 31336761 + Atxn7l1 protein_coding retained_intron MGP_C3HHeJ_T0034388.1 MGP_C3HHeJ_G0019422.1 mouse_genomes_project 12 31335807 31342204 + MGP_C3HHeJ_P0034388 Atxn7l1 protein_coding protein_coding MGP_C3HHeJ_T0034902.1 MGP_C3HHeJ_G0019619.1 mouse_genomes_project 12 78936904 78984213 - MGP_C3HHeJ_P0034902 Tmem229b-ps protein_coding protein_coding MGP_C3HHeJ_T0034903.1 MGP_C3HHeJ_G0019619.1 mouse_genomes_project 12 78948442 78955916 - Tmem229b-ps protein_coding processed_transcript MGP_C3HHeJ_T0034904.1 MGP_C3HHeJ_G0019619.1 mouse_genomes_project 12 78952907 78983599 - Tmem229b-ps protein_coding processed_transcript MGP_C3HHeJ_T0000050.1 MGP_C3HHeJ_G0000040.1 mouse_genomes_project 12 116498869 116499163 + MGP_C3HHeJ_P0000050 Ighv1-13 IG_LV_gene IG_LV_gene MGP_C3HHeJ_T0100106.1 MGP_C3HHeJ_G0038300.1 mouse_genomes_project 12 111138040 111138115 + Gm23474 snoRNA snoRNA MGP_C3HHeJ_T0034864.1 MGP_C3HHeJ_G0019602.1 mouse_genomes_project 12 76311046 76332604 + MGP_C3HHeJ_P0034864 Ppp1r36 protein_coding protein_coding MGP_C3HHeJ_T0003316.1 MGP_C3HHeJ_G0003049.1 mouse_genomes_project 12 27922777 27925242 + Gm15691 antisense antisense MGP_C3HHeJ_T0009758.1 MGP_C3HHeJ_G0007891.1 mouse_genomes_project 12 111097973 111098053 - Mir3071 miRNA miRNA MGP_C3HHeJ_T0034071.1 MGP_C3HHeJ_G0019310.1 mouse_genomes_project 12 767628 848210 - MGP_C3HHeJ_P0034071 Efr3b protein_coding protein_coding MGP_C3HHeJ_T0098870.1 MGP_C3HHeJ_G0037064.1 mouse_genomes_project 12 110346274 110346635 - Gm22079 snRNA snRNA MGP_C3HHeJ_T0098840.1 MGP_C3HHeJ_G0037034.1 mouse_genomes_project 12 51217561 51217668 + Gm24859 snRNA snRNA MGP_C3HHeJ_T0034426.1 MGP_C3HHeJ_G0019445.1 mouse_genomes_project 12 36000489 36777622 + MGP_C3HHeJ_P0034426 Dgkb protein_coding protein_coding MGP_C3HHeJ_T0034427.1 MGP_C3HHeJ_G0019445.1 mouse_genomes_project 12 36080919 36778459 + MGP_C3HHeJ_P0034427 Dgkb protein_coding unknown_likely_coding MGP_C3HHeJ_T0100118.1 MGP_C3HHeJ_G0038312.1 mouse_genomes_project 12 111179190 111179272 + Gm23347 snoRNA snoRNA MGP_C3HHeJ_T0034651.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 65933530 66738302 - MGP_C3HHeJ_P0034651 Mdga2 protein_coding protein_coding MGP_C3HHeJ_T0034652.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 65934598 65935021 - MGP_C3HHeJ_P0034652 Mdga2 protein_coding protein_coding MGP_C3HHeJ_T0034653.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 65935144 66736986 - MGP_C3HHeJ_P0034653 Mdga2 protein_coding protein_coding MGP_C3HHeJ_T0034654.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 65935431 66736967 - MGP_C3HHeJ_P0034654 Mdga2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034655.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 65945584 65951297 - Mdga2 protein_coding retained_intron MGP_C3HHeJ_T0034656.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 66092148 66103773 - Mdga2 protein_coding processed_transcript MGP_C3HHeJ_T0034657.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 66169289 66312125 - Mdga2 protein_coding processed_transcript MGP_C3HHeJ_T0034658.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 66706789 66738295 - Mdga2 protein_coding processed_transcript MGP_C3HHeJ_T0034659.1 MGP_C3HHeJ_G0019528.1 mouse_genomes_project 12 66727598 66738134 - Mdga2 protein_coding processed_transcript MGP_C3HHeJ_T0034589.1 MGP_C3HHeJ_G0019509.1 mouse_genomes_project 12 57918057 57973753 - MGP_C3HHeJ_P0034589 Sec23a protein_coding protein_coding MGP_C3HHeJ_T0034590.1 MGP_C3HHeJ_G0019509.1 mouse_genomes_project 12 57919378 57968971 - MGP_C3HHeJ_P0034590 Sec23a protein_coding protein_coding MGP_C3HHeJ_T0034591.1 MGP_C3HHeJ_G0019509.1 mouse_genomes_project 12 57926279 57931719 - Sec23a protein_coding retained_intron MGP_C3HHeJ_T0034592.1 MGP_C3HHeJ_G0019509.1 mouse_genomes_project 12 57933440 57944781 - Sec23a protein_coding retained_intron MGP_C3HHeJ_T0034593.1 MGP_C3HHeJ_G0019509.1 mouse_genomes_project 12 57968389 57973753 - Sec23a protein_coding retained_intron MGP_C3HHeJ_T0034726.1 MGP_C3HHeJ_G0019555.1 mouse_genomes_project 12 70590580 70618604 + MGP_C3HHeJ_P0034726 Actr10 protein_coding protein_coding MGP_C3HHeJ_T0012705.1 MGP_C3HHeJ_G0010809.1 mouse_genomes_project 12 92114134 92114924 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034826.1 MGP_C3HHeJ_G0019591.1 mouse_genomes_project 12 75302756 75451530 - MGP_C3HHeJ_P0034826 Ppp2r5e protein_coding protein_coding MGP_C3HHeJ_T0035238.1 MGP_C3HHeJ_G0019719.1 mouse_genomes_project 12 87345162 87419155 + MGP_C3HHeJ_P0035238 Tmem63c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035239.1 MGP_C3HHeJ_G0019719.1 mouse_genomes_project 12 87350143 87419150 + MGP_C3HHeJ_P0035239 Tmem63c protein_coding protein_coding MGP_C3HHeJ_T0035240.1 MGP_C3HHeJ_G0019719.1 mouse_genomes_project 12 87350415 87419145 + MGP_C3HHeJ_P0035240 Tmem63c protein_coding protein_coding MGP_C3HHeJ_T0035241.1 MGP_C3HHeJ_G0019719.1 mouse_genomes_project 12 87350467 87386635 + MGP_C3HHeJ_P0035241 Tmem63c protein_coding protein_coding MGP_C3HHeJ_T0035242.1 MGP_C3HHeJ_G0019719.1 mouse_genomes_project 12 87362916 87419153 + MGP_C3HHeJ_P0035242 Tmem63c protein_coding protein_coding MGP_C3HHeJ_T0035518.1 MGP_C3HHeJ_G0019804.1 mouse_genomes_project 12 104850597 104874948 - MGP_C3HHeJ_P0035518 protein_coding protein_coding MGP_C3HHeJ_T0000251.1 MGP_C3HHeJ_G0000201.1 mouse_genomes_project 12 117716050 117716344 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0012700.1 MGP_C3HHeJ_G0010804.1 mouse_genomes_project 12 84423404 84424046 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034749.1 MGP_C3HHeJ_G0019563.1 mouse_genomes_project 12 71749238 71750612 - MGP_C3HHeJ_P0034749 Gpr135 protein_coding protein_coding MGP_C3HHeJ_T0034017.1 MGP_C3HHeJ_G0019303.1 mouse_genomes_project 12 15773 80215 - MGP_C3HHeJ_P0034017 Rab10 protein_coding protein_coding MGP_C3HHeJ_T0034503.1 MGP_C3HHeJ_G0019470.1 mouse_genomes_project 12 50338720 50433701 - MGP_C3HHeJ_P0034503 Hectd1 protein_coding protein_coding MGP_C3HHeJ_T0034504.1 MGP_C3HHeJ_G0019470.1 mouse_genomes_project 12 50338720 50433701 - MGP_C3HHeJ_P0034504 Hectd1 protein_coding protein_coding MGP_C3HHeJ_T0034660.1 MGP_C3HHeJ_G0019529.1 mouse_genomes_project 12 68719573 68721034 - MGP_C3HHeJ_P0034660 Rps29 protein_coding protein_coding MGP_C3HHeJ_T0034661.1 MGP_C3HHeJ_G0019529.1 mouse_genomes_project 12 68720209 68720902 - Rps29 protein_coding retained_intron MGP_C3HHeJ_T0035226.1 MGP_C3HHeJ_G0019716.1 mouse_genomes_project 12 87029503 87060421 + MGP_C3HHeJ_P0035226 Lrrc74a protein_coding protein_coding MGP_C3HHeJ_T0000234.1 MGP_C3HHeJ_G0000184.1 mouse_genomes_project 12 116155378 116155668 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000035.1 MGP_C3HHeJ_G0000028.1 mouse_genomes_project 12 115216377 115216430 - MGP_C3HHeJ_P0000035 Ighj1 IG_J_gene IG_J_gene MGP_C3HHeJ_T0034441.1 MGP_C3HHeJ_G0019447.1 mouse_genomes_project 12 38210437 38242189 - MGP_C3HHeJ_P0034441 Arl4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034442.1 MGP_C3HHeJ_G0019447.1 mouse_genomes_project 12 38210437 38242198 - MGP_C3HHeJ_P0034442 Arl4a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034443.1 MGP_C3HHeJ_G0019447.1 mouse_genomes_project 12 38214439 38219307 - Arl4a protein_coding processed_transcript MGP_C3HHeJ_T0034444.1 MGP_C3HHeJ_G0019447.1 mouse_genomes_project 12 38238112 38242251 - MGP_C3HHeJ_P0034444 Arl4a protein_coding protein_coding MGP_C3HHeJ_T0034445.1 MGP_C3HHeJ_G0019447.1 mouse_genomes_project 12 38240643 38242847 - MGP_C3HHeJ_P0034445 Arl4a protein_coding protein_coding MGP_C3HHeJ_T0000218.1 MGP_C3HHeJ_G0000168.1 mouse_genomes_project 12 115404989 115405458 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035385.1 MGP_C3HHeJ_G0019758.1 mouse_genomes_project 12 100938287 100951082 + MGP_C3HHeJ_P0035385 Psmc1 protein_coding protein_coding MGP_C3HHeJ_T0034165.1 MGP_C3HHeJ_G0019343.1 mouse_genomes_project 12 7588238 7592986 + MGP_C3HHeJ_P0034165 Rdh14 protein_coding protein_coding MGP_C3HHeJ_T0035419.1 MGP_C3HHeJ_G0019770.1 mouse_genomes_project 12 102741932 102828086 - MGP_C3HHeJ_P0035419 Trip11 protein_coding protein_coding MGP_C3HHeJ_T0035420.1 MGP_C3HHeJ_G0019770.1 mouse_genomes_project 12 102745435 102806547 - MGP_C3HHeJ_P0035420 Trip11 protein_coding protein_coding MGP_C3HHeJ_T0035421.1 MGP_C3HHeJ_G0019770.1 mouse_genomes_project 12 102784975 102794901 - MGP_C3HHeJ_P0035421 Trip11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035422.1 MGP_C3HHeJ_G0019770.1 mouse_genomes_project 12 102797513 102827942 - MGP_C3HHeJ_P0035422 Trip11 protein_coding protein_coding MGP_C3HHeJ_T0035423.1 MGP_C3HHeJ_G0019770.1 mouse_genomes_project 12 102801976 102827959 - MGP_C3HHeJ_P0035423 Trip11 protein_coding protein_coding MGP_C3HHeJ_T0035424.1 MGP_C3HHeJ_G0019770.1 mouse_genomes_project 12 102827094 102827974 - Trip11 protein_coding processed_transcript MGP_C3HHeJ_T0009747.1 MGP_C3HHeJ_G0007880.1 mouse_genomes_project 12 111087319 111087416 + Mir337 miRNA miRNA MGP_C3HHeJ_T0000058.1 MGP_C3HHeJ_G0000047.1 mouse_genomes_project 12 115730198 115730681 - MGP_C3HHeJ_P0000058 Ighv5-15 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000059.1 MGP_C3HHeJ_G0000047.1 mouse_genomes_project 12 115730198 115730673 - MGP_C3HHeJ_P0000059 Ighv5-15 IG_V_gene IG_V_gene MGP_C3HHeJ_T0009727.1 MGP_C3HHeJ_G0007860.1 mouse_genomes_project 12 89909396 89909538 - Gm27313 miRNA miRNA MGP_C3HHeJ_T0035042.1 MGP_C3HHeJ_G0019660.1 mouse_genomes_project 12 83883083 83913576 + MGP_C3HHeJ_P0035042 Papln protein_coding protein_coding MGP_C3HHeJ_T0035043.1 MGP_C3HHeJ_G0019660.1 mouse_genomes_project 12 83883103 83913549 + MGP_C3HHeJ_P0035043 Papln protein_coding protein_coding MGP_C3HHeJ_T0035044.1 MGP_C3HHeJ_G0019660.1 mouse_genomes_project 12 83883111 83902326 + Papln protein_coding retained_intron MGP_C3HHeJ_T0035160.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85437402 85444581 + MGP_C3HHeJ_P0035160 Eif2b2 protein_coding protein_coding MGP_C3HHeJ_T0035161.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85437425 85440761 + MGP_C3HHeJ_P0035161 Eif2b2 protein_coding protein_coding MGP_C3HHeJ_T0035162.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85437434 85444103 + MGP_C3HHeJ_P0035162 Eif2b2 protein_coding protein_coding MGP_C3HHeJ_T0035163.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85437436 85437871 + Eif2b2 protein_coding retained_intron MGP_C3HHeJ_T0035164.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85437467 85440748 + Eif2b2 protein_coding retained_intron MGP_C3HHeJ_T0035165.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85437503 85441410 + Eif2b2 protein_coding retained_intron MGP_C3HHeJ_T0035166.1 MGP_C3HHeJ_G0019698.1 mouse_genomes_project 12 85442478 85444446 + Eif2b2 protein_coding retained_intron MGP_C3HHeJ_T0035461.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103906651 104157799 + MGP_C3HHeJ_P0035461 Unc79 protein_coding protein_coding MGP_C3HHeJ_T0035462.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103908953 104157411 + MGP_C3HHeJ_P0035462 Unc79 protein_coding protein_coding MGP_C3HHeJ_T0035463.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103955267 104157411 + MGP_C3HHeJ_P0035463 Unc79 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035464.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103965670 103970062 + Unc79 protein_coding retained_intron MGP_C3HHeJ_T0035465.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103966441 104032060 + MGP_C3HHeJ_P0035465 Unc79 protein_coding protein_coding MGP_C3HHeJ_T0035466.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103966492 104157796 + MGP_C3HHeJ_P0035466 Unc79 protein_coding protein_coding MGP_C3HHeJ_T0035467.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 103966549 104157863 + MGP_C3HHeJ_P0035467 Unc79 protein_coding protein_coding MGP_C3HHeJ_T0035468.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 104031710 104043333 + Unc79 protein_coding retained_intron MGP_C3HHeJ_T0035469.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 104068276 104084456 + MGP_C3HHeJ_P0035469 Unc79 protein_coding protein_coding MGP_C3HHeJ_T0035470.1 MGP_C3HHeJ_G0019787.1 mouse_genomes_project 12 104107738 104119153 + MGP_C3HHeJ_P0035470 Unc79 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006361.1 MGP_C3HHeJ_G0005293.1 mouse_genomes_project 12 86565651 86580909 - 4732487G21Rik lincRNA lincRNA MGP_C3HHeJ_T0006368.1 MGP_C3HHeJ_G0005300.1 mouse_genomes_project 12 100368257 100424895 + Gm26839 lincRNA lincRNA MGP_C3HHeJ_T0100086.1 MGP_C3HHeJ_G0038280.1 mouse_genomes_project 12 64133031 64133162 + Gm24066 snoRNA snoRNA MGP_C3HHeJ_T0017087.1 MGP_C3HHeJ_G0014997.1 mouse_genomes_project 12 101019705 101025275 + Gm10433 processed_transcript processed_transcript MGP_C3HHeJ_T0017088.1 MGP_C3HHeJ_G0014997.1 mouse_genomes_project 12 101020510 101024480 + Gm10433 processed_transcript processed_transcript MGP_C3HHeJ_T0003355.1 MGP_C3HHeJ_G0003082.1 mouse_genomes_project 12 110534280 110534749 + Gm28498 antisense antisense MGP_C3HHeJ_T0009817.1 MGP_C3HHeJ_G0007950.1 mouse_genomes_project 12 114829977 114830077 - Gm44471 miRNA miRNA MGP_C3HHeJ_T0034417.1 MGP_C3HHeJ_G0019440.1 mouse_genomes_project 12 34433359 34437638 + MGP_C3HHeJ_P0034417 Sostdc1 protein_coding protein_coding MGP_C3HHeJ_T0000127.1 MGP_C3HHeJ_G0000097.1 mouse_genomes_project 12 118236935 118237389 - MGP_C3HHeJ_P0000127 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034128.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782101 5870383 + MGP_C3HHeJ_P0034128 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034129.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782101 5869256 + MGP_C3HHeJ_P0034129 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034130.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782112 5868122 + MGP_C3HHeJ_P0034130 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034131.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782191 5870363 + MGP_C3HHeJ_P0034131 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034132.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782226 5822831 + Pum2 protein_coding processed_transcript MGP_C3HHeJ_T0034133.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782242 5870359 + MGP_C3HHeJ_P0034133 Pum2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034134.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782381 5870356 + MGP_C3HHeJ_P0034134 Pum2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034135.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782388 5867803 + MGP_C3HHeJ_P0034135 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034136.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782437 5867830 + MGP_C3HHeJ_P0034136 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034137.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782648 5870383 + MGP_C3HHeJ_P0034137 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034138.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782703 5829093 + MGP_C3HHeJ_P0034138 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034139.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5782732 5828862 + MGP_C3HHeJ_P0034139 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034140.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5785501 5824953 + MGP_C3HHeJ_P0034140 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034141.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5809459 5829376 + MGP_C3HHeJ_P0034141 Pum2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034142.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5825688 5837057 + MGP_C3HHeJ_P0034142 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034143.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5844406 5866038 + MGP_C3HHeJ_P0034143 Pum2 protein_coding protein_coding MGP_C3HHeJ_T0034144.1 MGP_C3HHeJ_G0019335.1 mouse_genomes_project 12 5858735 5859655 + Pum2 protein_coding retained_intron MGP_C3HHeJ_T0101685.1 MGP_C3HHeJ_G0039650.1 mouse_genomes_project 12 115152710 115153916 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0034287.1 MGP_C3HHeJ_G0019392.1 mouse_genomes_project 12 26493636 26503555 + MGP_C3HHeJ_P0034287 Rnaseh1 protein_coding protein_coding MGP_C3HHeJ_T0035015.1 MGP_C3HHeJ_G0019655.1 mouse_genomes_project 12 83296635 83444218 - MGP_C3HHeJ_P0035015 Dpf3 protein_coding protein_coding MGP_C3HHeJ_T0035016.1 MGP_C3HHeJ_G0019655.1 mouse_genomes_project 12 83296641 83591683 - MGP_C3HHeJ_P0035016 Dpf3 protein_coding protein_coding MGP_C3HHeJ_T0035017.1 MGP_C3HHeJ_G0019655.1 mouse_genomes_project 12 83342256 83591675 - MGP_C3HHeJ_P0035017 Dpf3 protein_coding protein_coding MGP_C3HHeJ_T0035018.1 MGP_C3HHeJ_G0019655.1 mouse_genomes_project 12 83353695 83591675 - MGP_C3HHeJ_P0035018 Dpf3 protein_coding protein_coding MGP_C3HHeJ_T0035019.1 MGP_C3HHeJ_G0019655.1 mouse_genomes_project 12 83353812 83540854 - MGP_C3HHeJ_P0035019 Dpf3 protein_coding protein_coding MGP_C3HHeJ_T0034227.1 MGP_C3HHeJ_G0019368.1 mouse_genomes_project 12 15045226 15054180 + MGP_C3HHeJ_P0034227 Odc1 protein_coding protein_coding MGP_C3HHeJ_T0034564.1 MGP_C3HHeJ_G0019501.1 mouse_genomes_project 12 55550745 55573563 + MGP_C3HHeJ_P0034564 Pax9 protein_coding protein_coding MGP_C3HHeJ_T0034565.1 MGP_C3HHeJ_G0019501.1 mouse_genomes_project 12 55554623 55573678 + MGP_C3HHeJ_P0034565 Pax9 protein_coding protein_coding MGP_C3HHeJ_T0034566.1 MGP_C3HHeJ_G0019501.1 mouse_genomes_project 12 55554713 55571243 + Pax9 protein_coding retained_intron MGP_C3HHeJ_T0035563.1 MGP_C3HHeJ_G0019833.1 mouse_genomes_project 12 106852591 106891563 + MGP_C3HHeJ_P0035563 Bdkrb2 protein_coding protein_coding MGP_C3HHeJ_T0098852.1 MGP_C3HHeJ_G0037046.1 mouse_genomes_project 12 62983737 62983844 + Gm24921 snRNA snRNA MGP_C3HHeJ_T0035476.1 MGP_C3HHeJ_G0019789.1 mouse_genomes_project 12 104290327 104296418 + MGP_C3HHeJ_P0035476 Fam181a protein_coding protein_coding MGP_C3HHeJ_T0035477.1 MGP_C3HHeJ_G0019789.1 mouse_genomes_project 12 104294305 104295671 + MGP_C3HHeJ_P0035477 Fam181a protein_coding protein_coding MGP_C3HHeJ_T0035478.1 MGP_C3HHeJ_G0019789.1 mouse_genomes_project 12 104294311 104296418 + MGP_C3HHeJ_P0035478 Fam181a protein_coding protein_coding MGP_C3HHeJ_T0035571.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097552 107153093 + MGP_C3HHeJ_P0035571 Papola protein_coding protein_coding MGP_C3HHeJ_T0035572.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097562 107153225 + MGP_C3HHeJ_P0035572 Papola protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035573.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097562 107149179 + MGP_C3HHeJ_P0035573 Papola protein_coding protein_coding MGP_C3HHeJ_T0035574.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097569 107123875 + Papola protein_coding processed_transcript MGP_C3HHeJ_T0035575.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097574 107151417 + MGP_C3HHeJ_P0035575 Papola protein_coding protein_coding MGP_C3HHeJ_T0035576.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097584 107124036 + MGP_C3HHeJ_P0035576 Papola protein_coding protein_coding MGP_C3HHeJ_T0035577.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097591 107128397 + Papola protein_coding retained_intron MGP_C3HHeJ_T0035578.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097596 107151144 + MGP_C3HHeJ_P0035578 Papola protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035579.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097598 107124037 + Papola protein_coding processed_transcript MGP_C3HHeJ_T0035580.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097601 107153230 + MGP_C3HHeJ_P0035580 Papola protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035581.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097603 107120917 + MGP_C3HHeJ_P0035581 Papola protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035582.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107097730 107151559 + MGP_C3HHeJ_P0035582 Papola protein_coding protein_coding MGP_C3HHeJ_T0035583.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107114021 107125740 + Papola protein_coding retained_intron MGP_C3HHeJ_T0035584.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107122941 107134707 + MGP_C3HHeJ_P0035584 Papola protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035585.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107123651 107124037 + Papola protein_coding retained_intron MGP_C3HHeJ_T0035586.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107126627 107151396 + MGP_C3HHeJ_P0035586 Papola protein_coding protein_coding MGP_C3HHeJ_T0035587.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107126678 107143532 + MGP_C3HHeJ_P0035587 Papola protein_coding protein_coding MGP_C3HHeJ_T0035588.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107132207 107133158 + Papola protein_coding retained_intron MGP_C3HHeJ_T0035589.1 MGP_C3HHeJ_G0019838.1 mouse_genomes_project 12 107143352 107149785 + MGP_C3HHeJ_P0035589 Papola protein_coding protein_coding MGP_C3HHeJ_T0011239.1 MGP_C3HHeJ_G0009372.1 mouse_genomes_project 12 87117188 87117490 + Gm25888 misc_RNA misc_RNA MGP_C3HHeJ_T0034868.1 MGP_C3HHeJ_G0019605.1 mouse_genomes_project 12 76484539 76616463 - MGP_C3HHeJ_P0034868 Sptb protein_coding protein_coding MGP_C3HHeJ_T0034869.1 MGP_C3HHeJ_G0019605.1 mouse_genomes_project 12 76487282 76488138 - Sptb protein_coding retained_intron MGP_C3HHeJ_T0034870.1 MGP_C3HHeJ_G0019605.1 mouse_genomes_project 12 76500139 76615939 - MGP_C3HHeJ_P0034870 Sptb protein_coding protein_coding MGP_C3HHeJ_T0000118.1 MGP_C3HHeJ_G0000089.1 mouse_genomes_project 12 118030925 118031216 - MGP_C3HHeJ_P0000118 Ighv1-62-1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000056.1 MGP_C3HHeJ_G0000045.1 mouse_genomes_project 12 115684642 115685102 - MGP_C3HHeJ_P0000056 IG_V_gene IG_V_gene MGP_C3HHeJ_T0009723.1 MGP_C3HHeJ_G0007856.1 mouse_genomes_project 12 85959635 85959696 - miRNA miRNA MGP_C3HHeJ_T0035870.1 MGP_C3HHeJ_G0019930.1 mouse_genomes_project 12 120560263 120633784 - MGP_C3HHeJ_P0035870 Sp4 protein_coding protein_coding MGP_C3HHeJ_T0034306.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28029555 28231436 - MGP_C3HHeJ_P0034306 Sntg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034307.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28029556 28231483 - MGP_C3HHeJ_P0034307 Sntg2 protein_coding protein_coding MGP_C3HHeJ_T0034308.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28030063 28231373 - MGP_C3HHeJ_P0034308 Sntg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034309.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28030068 28231436 - MGP_C3HHeJ_P0034309 Sntg2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034310.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28044641 28050936 - Sntg2 protein_coding retained_intron MGP_C3HHeJ_T0034311.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28118619 28212670 - Sntg2 protein_coding processed_transcript MGP_C3HHeJ_T0034312.1 MGP_C3HHeJ_G0019399.1 mouse_genomes_project 12 28163504 28231451 - Sntg2 protein_coding processed_transcript MGP_C3HHeJ_T0012671.1 MGP_C3HHeJ_G0010775.1 mouse_genomes_project 12 13164799 13166878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098022.1 MGP_C3HHeJ_G0036234.1 mouse_genomes_project 12 106940425 106940554 + Gm22790 rRNA rRNA MGP_C3HHeJ_T0035544.1 MGP_C3HHeJ_G0019821.1 mouse_genomes_project 12 105646863 105649866 + MGP_C3HHeJ_P0035544 Gm1000 protein_coding protein_coding MGP_C3HHeJ_T0035386.1 MGP_C3HHeJ_G0019759.1 mouse_genomes_project 12 100953169 100989314 - MGP_C3HHeJ_P0035386 Nrde2 protein_coding protein_coding MGP_C3HHeJ_T0009821.1 MGP_C3HHeJ_G0007954.1 mouse_genomes_project 12 118496096 118496152 - Gm23190 miRNA miRNA MGP_C3HHeJ_T0000011.1 MGP_C3HHeJ_G0000008.1 mouse_genomes_project 12 115141074 115142732 - MGP_C3HHeJ_P0000011 Ighg3 IG_C_gene IG_C_gene MGP_C3HHeJ_T0034856.1 MGP_C3HHeJ_G0019599.1 mouse_genomes_project 12 76239072 76248374 - MGP_C3HHeJ_P0034856 Zbtb25 protein_coding protein_coding MGP_C3HHeJ_T0034857.1 MGP_C3HHeJ_G0019599.1 mouse_genomes_project 12 76240133 76260630 - MGP_C3HHeJ_P0034857 Zbtb25 protein_coding protein_coding MGP_C3HHeJ_T0034858.1 MGP_C3HHeJ_G0019599.1 mouse_genomes_project 12 76240177 76260165 - MGP_C3HHeJ_P0034858 Zbtb25 protein_coding protein_coding MGP_C3HHeJ_T0034859.1 MGP_C3HHeJ_G0019599.1 mouse_genomes_project 12 76240178 76260768 - MGP_C3HHeJ_P0034859 Zbtb25 protein_coding protein_coding MGP_C3HHeJ_T0034860.1 MGP_C3HHeJ_G0019599.1 mouse_genomes_project 12 76241259 76260559 - MGP_C3HHeJ_P0034860 Zbtb25 protein_coding protein_coding MGP_C3HHeJ_T0034861.1 MGP_C3HHeJ_G0019599.1 mouse_genomes_project 12 76241376 76260630 - MGP_C3HHeJ_P0034861 Zbtb25 protein_coding protein_coding MGP_C3HHeJ_T0000074.1 MGP_C3HHeJ_G0000059.1 mouse_genomes_project 12 115947447 115949944 - MGP_C3HHeJ_P0000074 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000835.1 MGP_C3HHeJ_G0000776.1 mouse_genomes_project 12 86333505 86334112 + TEC TEC MGP_C3HHeJ_T0035787.1 MGP_C3HHeJ_G0019901.1 mouse_genomes_project 12 114454772 114479264 + MGP_C3HHeJ_P0035787 Cep170b protein_coding protein_coding MGP_C3HHeJ_T0035788.1 MGP_C3HHeJ_G0019901.1 mouse_genomes_project 12 114454792 114479258 + MGP_C3HHeJ_P0035788 Cep170b protein_coding protein_coding MGP_C3HHeJ_T0035789.1 MGP_C3HHeJ_G0019901.1 mouse_genomes_project 12 114454792 114479258 + MGP_C3HHeJ_P0035789 Cep170b protein_coding protein_coding MGP_C3HHeJ_T0034540.1 MGP_C3HHeJ_G0019487.1 mouse_genomes_project 12 53827079 53861416 + MGP_C3HHeJ_P0034540 protein_coding protein_coding MGP_C3HHeJ_T0034806.1 MGP_C3HHeJ_G0019580.1 mouse_genomes_project 12 73091086 73099638 - MGP_C3HHeJ_P0034806 D830013O20Rik protein_coding protein_coding MGP_C3HHeJ_T0009728.1 MGP_C3HHeJ_G0007861.1 mouse_genomes_project 12 90048017 90048083 + Gm23989 miRNA miRNA MGP_C3HHeJ_T0000062.1 MGP_C3HHeJ_G0000049.1 mouse_genomes_project 12 115761791 115762303 - MGP_C3HHeJ_P0000062 Ighv5-17 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034649.1 MGP_C3HHeJ_G0019526.1 mouse_genomes_project 12 64649034 64651581 + MGP_C3HHeJ_P0034649 Wdr20rt protein_coding protein_coding MGP_C3HHeJ_T0097853.1 MGP_C3HHeJ_G0036065.1 mouse_genomes_project 12 84584426 84585810 + pseudogene pseudogene MGP_C3HHeJ_T0000113.1 MGP_C3HHeJ_G0000086.1 mouse_genomes_project 12 116940332 116940626 - MGP_C3HHeJ_P0000113 Ighv1-47 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000114.1 MGP_C3HHeJ_G0000086.1 mouse_genomes_project 12 116940332 116940805 - MGP_C3HHeJ_P0000114 Ighv1-47 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034406.1 MGP_C3HHeJ_G0019434.1 mouse_genomes_project 12 34095413 34100523 + Agr2 protein_coding retained_intron MGP_C3HHeJ_T0034407.1 MGP_C3HHeJ_G0019434.1 mouse_genomes_project 12 34095413 34106625 + MGP_C3HHeJ_P0034407 Agr2 protein_coding protein_coding MGP_C3HHeJ_T0017110.1 MGP_C3HHeJ_G0015002.1 mouse_genomes_project 12 113393551 113394294 + Gm15995 processed_transcript processed_transcript MGP_C3HHeJ_T0034314.1 MGP_C3HHeJ_G0019401.1 mouse_genomes_project 12 28758245 28767896 + MGP_C3HHeJ_P0034314 Fam150b protein_coding protein_coding MGP_C3HHeJ_T0035509.1 MGP_C3HHeJ_G0019799.1 mouse_genomes_project 12 104648188 104658771 - MGP_C3HHeJ_P0035509 Serpina6 protein_coding protein_coding MGP_C3HHeJ_T0035510.1 MGP_C3HHeJ_G0019799.1 mouse_genomes_project 12 104655932 104658661 - MGP_C3HHeJ_P0035510 Serpina6 protein_coding protein_coding MGP_C3HHeJ_T0006358.1 MGP_C3HHeJ_G0005290.1 mouse_genomes_project 12 84184462 84201151 - 4732463B04Rik lincRNA lincRNA MGP_C3HHeJ_T0034739.1 MGP_C3HHeJ_G0019558.1 mouse_genomes_project 12 70771537 70783765 + MGP_C3HHeJ_P0034739 Tomm20l protein_coding protein_coding MGP_C3HHeJ_T0009711.1 MGP_C3HHeJ_G0007844.1 mouse_genomes_project 12 68721365 68721445 + miRNA miRNA MGP_C3HHeJ_T0035287.1 MGP_C3HHeJ_G0019736.1 mouse_genomes_project 12 88541716 88542209 + MGP_C3HHeJ_P0035287 Gm10264 protein_coding protein_coding MGP_C3HHeJ_T0006338.1 MGP_C3HHeJ_G0005274.1 mouse_genomes_project 12 50494061 50495508 + Gm26517 lincRNA lincRNA MGP_C3HHeJ_T0012731.1 MGP_C3HHeJ_G0010835.1 mouse_genomes_project 12 118238493 118242487 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035727.1 MGP_C3HHeJ_G0019883.1 mouse_genomes_project 12 113378536 113404918 + MGP_C3HHeJ_P0035727 Apopt1 protein_coding protein_coding MGP_C3HHeJ_T0035728.1 MGP_C3HHeJ_G0019883.1 mouse_genomes_project 12 113378555 113426069 + MGP_C3HHeJ_P0035728 Apopt1 protein_coding protein_coding MGP_C3HHeJ_T0035729.1 MGP_C3HHeJ_G0019883.1 mouse_genomes_project 12 113378555 113422758 + MGP_C3HHeJ_P0035729 Apopt1 protein_coding protein_coding MGP_C3HHeJ_T0035730.1 MGP_C3HHeJ_G0019883.1 mouse_genomes_project 12 113378559 113390109 + MGP_C3HHeJ_P0035730 Apopt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035731.1 MGP_C3HHeJ_G0019883.1 mouse_genomes_project 12 113378561 113394282 + MGP_C3HHeJ_P0035731 Apopt1 protein_coding protein_coding MGP_C3HHeJ_T0034871.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76668575 76837035 + MGP_C3HHeJ_P0034871 Fntb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034872.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76668584 76835494 + MGP_C3HHeJ_P0034872 Fntb protein_coding protein_coding MGP_C3HHeJ_T0034882.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76747191 76837788 + MGP_C3HHeJ_P0034882 Fntb protein_coding protein_coding MGP_C3HHeJ_T0034883.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76747210 76754370 + Fntb protein_coding processed_transcript MGP_C3HHeJ_T0034884.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76750074 76800481 + Fntb protein_coding processed_transcript MGP_C3HHeJ_T0034885.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76799733 76823883 + Fntb protein_coding processed_transcript MGP_C3HHeJ_T0034886.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76822105 76823962 + Fntb protein_coding processed_transcript MGP_C3HHeJ_T0034887.1 MGP_C3HHeJ_G0019606.1 mouse_genomes_project 12 76823628 76828469 + Fntb protein_coding retained_intron MGP_C3HHeJ_T0098273.1 MGP_C3HHeJ_G0036485.1 mouse_genomes_project 12 80423833 80423972 - Scarna3b scaRNA scaRNA MGP_C3HHeJ_T0035536.1 MGP_C3HHeJ_G0019813.1 mouse_genomes_project 12 105279285 105287389 - MGP_C3HHeJ_P0035536 Serpina3c protein_coding protein_coding MGP_C3HHeJ_T0034901.1 MGP_C3HHeJ_G0019618.1 mouse_genomes_project 12 78856503 78875800 - MGP_C3HHeJ_P0034901 Plek2 protein_coding protein_coding MGP_C3HHeJ_T0012684.1 MGP_C3HHeJ_G0010788.1 mouse_genomes_project 12 60504092 60505065 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101673.1 MGP_C3HHeJ_G0039639.1 mouse_genomes_project 12 61518645 61519911 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100111.1 MGP_C3HHeJ_G0038305.1 mouse_genomes_project 12 111155508 111155580 + DQ267100 snoRNA snoRNA MGP_C3HHeJ_T0035592.1 MGP_C3HHeJ_G0019840.1 mouse_genomes_project 12 108903896 108904901 + MGP_C3HHeJ_P0035592 3110018I06Rik protein_coding protein_coding MGP_C3HHeJ_T0000242.1 MGP_C3HHeJ_G0000192.1 mouse_genomes_project 12 116470012 116470451 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0100083.1 MGP_C3HHeJ_G0038277.1 mouse_genomes_project 12 58114783 58114905 + Gm24233 snoRNA snoRNA MGP_C3HHeJ_T0009716.1 MGP_C3HHeJ_G0007849.1 mouse_genomes_project 12 72157379 72157494 - Gm44392 miRNA miRNA MGP_C3HHeJ_T0035739.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113479247 113489747 - MGP_C3HHeJ_P0035739 Xrcc3 protein_coding protein_coding MGP_C3HHeJ_T0035740.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113479247 113488120 - MGP_C3HHeJ_P0035740 Xrcc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035741.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113480902 113488120 - Xrcc3 protein_coding processed_transcript MGP_C3HHeJ_T0035742.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113480968 113485958 - Xrcc3 protein_coding retained_intron MGP_C3HHeJ_T0035743.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113481063 113489779 - Xrcc3 protein_coding processed_transcript MGP_C3HHeJ_T0035745.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113485741 113488140 - Xrcc3 protein_coding processed_transcript MGP_C3HHeJ_T0035746.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113485876 113489758 - Xrcc3 protein_coding processed_transcript MGP_C3HHeJ_T0035747.1 MGP_C3HHeJ_G0019885.1 mouse_genomes_project 12 113487447 113488140 - Xrcc3 protein_coding processed_transcript MGP_C3HHeJ_T0006328.1 MGP_C3HHeJ_G0005266.1 mouse_genomes_project 12 28342522 28351664 - lincRNA lincRNA MGP_C3HHeJ_T0012697.1 MGP_C3HHeJ_G0010801.1 mouse_genomes_project 12 81671447 81671883 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100091.1 MGP_C3HHeJ_G0038285.1 mouse_genomes_project 12 66029349 66029468 - Gm23826 snoRNA snoRNA MGP_C3HHeJ_T0097852.1 MGP_C3HHeJ_G0036064.1 mouse_genomes_project 12 84241354 84241965 - pseudogene pseudogene MGP_C3HHeJ_T0003345.1 MGP_C3HHeJ_G0003074.1 mouse_genomes_project 12 91718794 91742617 + 5430427M07Rik antisense antisense MGP_C3HHeJ_T0035471.1 MGP_C3HHeJ_G0019788.1 mouse_genomes_project 12 104170705 104176682 - Prima1 protein_coding processed_transcript MGP_C3HHeJ_T0035472.1 MGP_C3HHeJ_G0019788.1 mouse_genomes_project 12 104170705 104215933 - MGP_C3HHeJ_P0035472 Prima1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035473.1 MGP_C3HHeJ_G0019788.1 mouse_genomes_project 12 104170705 104215937 - MGP_C3HHeJ_P0035473 Prima1 protein_coding protein_coding MGP_C3HHeJ_T0035474.1 MGP_C3HHeJ_G0019788.1 mouse_genomes_project 12 104171065 104215915 - MGP_C3HHeJ_P0035474 Prima1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035475.1 MGP_C3HHeJ_G0019788.1 mouse_genomes_project 12 104209432 104209810 - Prima1 protein_coding processed_transcript MGP_C3HHeJ_T0009733.1 MGP_C3HHeJ_G0007866.1 mouse_genomes_project 12 102443112 102443222 + Gm24542 miRNA miRNA MGP_C3HHeJ_T0003328.1 MGP_C3HHeJ_G0003059.1 mouse_genomes_project 12 56518696 56550042 - 4921518K17Rik antisense antisense MGP_C3HHeJ_T0012699.1 MGP_C3HHeJ_G0010803.1 mouse_genomes_project 12 83734271 83734659 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034900.1 MGP_C3HHeJ_G0019617.1 mouse_genomes_project 12 78828160 78854830 + MGP_C3HHeJ_P0034900 Eif2s1 protein_coding protein_coding MGP_C3HHeJ_T0034873.1 MGP_C3HHeJ_G0019607.1 mouse_genomes_project 12 76668586 76685844 + MGP_C3HHeJ_P0034873 Churc1 protein_coding protein_coding MGP_C3HHeJ_T0034874.1 MGP_C3HHeJ_G0019607.1 mouse_genomes_project 12 76671474 76678918 + Churc1 protein_coding retained_intron MGP_C3HHeJ_T0034544.1 MGP_C3HHeJ_G0019491.1 mouse_genomes_project 12 54087406 54189175 + MGP_C3HHeJ_P0034544 1110008L16Rik protein_coding protein_coding MGP_C3HHeJ_T0034545.1 MGP_C3HHeJ_G0019491.1 mouse_genomes_project 12 54090466 54189251 + MGP_C3HHeJ_P0034545 1110008L16Rik protein_coding protein_coding MGP_C3HHeJ_T0034546.1 MGP_C3HHeJ_G0019491.1 mouse_genomes_project 12 54090579 54111022 + 1110008L16Rik protein_coding retained_intron MGP_C3HHeJ_T0034547.1 MGP_C3HHeJ_G0019491.1 mouse_genomes_project 12 54091072 54189268 + MGP_C3HHeJ_P0034547 1110008L16Rik protein_coding protein_coding MGP_C3HHeJ_T0034548.1 MGP_C3HHeJ_G0019491.1 mouse_genomes_project 12 54091090 54189288 + MGP_C3HHeJ_P0034548 1110008L16Rik protein_coding protein_coding MGP_C3HHeJ_T0034549.1 MGP_C3HHeJ_G0019491.1 mouse_genomes_project 12 54108570 54189254 + MGP_C3HHeJ_P0034549 1110008L16Rik protein_coding protein_coding MGP_C3HHeJ_T0000055.1 MGP_C3HHeJ_G0000044.1 mouse_genomes_project 12 115684642 115685180 - MGP_C3HHeJ_P0000055 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035190.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073611 86108471 + MGP_C3HHeJ_P0035190 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035191.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073625 86144845 + MGP_C3HHeJ_P0035191 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035192.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073659 86134544 + MGP_C3HHeJ_P0035192 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035193.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073662 86315949 + MGP_C3HHeJ_P0035193 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035194.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073920 86277000 + MGP_C3HHeJ_P0035194 Ttll5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035195.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073921 86315397 + MGP_C3HHeJ_P0035195 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035196.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073930 86120170 + Ttll5 protein_coding processed_transcript MGP_C3HHeJ_T0035197.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073930 86315948 + MGP_C3HHeJ_P0035197 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035198.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073937 86092518 + MGP_C3HHeJ_P0035198 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035199.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073973 86094413 + Ttll5 protein_coding retained_intron MGP_C3HHeJ_T0035200.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86073973 86098048 + MGP_C3HHeJ_P0035200 Ttll5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035201.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86074027 86315948 + MGP_C3HHeJ_P0035201 Ttll5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035202.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86075436 86315398 + MGP_C3HHeJ_P0035202 Ttll5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035203.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86129091 86142299 + Ttll5 protein_coding retained_intron MGP_C3HHeJ_T0035204.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86163512 86180852 + MGP_C3HHeJ_P0035204 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035205.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86168731 86315948 + MGP_C3HHeJ_P0035205 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035206.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86173920 86273748 + MGP_C3HHeJ_P0035206 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035207.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86193011 86315948 + MGP_C3HHeJ_P0035207 Ttll5 protein_coding protein_coding MGP_C3HHeJ_T0035208.1 MGP_C3HHeJ_G0019709.1 mouse_genomes_project 12 86199639 86326218 + MGP_C3HHeJ_P0035208 Ttll5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009811.1 MGP_C3HHeJ_G0007944.1 mouse_genomes_project 12 113797689 113797774 + Mir3073a miRNA miRNA MGP_C3HHeJ_T0034560.1 MGP_C3HHeJ_G0019498.1 mouse_genomes_project 12 55173955 55191544 - MGP_C3HHeJ_P0034560 Mbip protein_coding protein_coding MGP_C3HHeJ_T0035542.1 MGP_C3HHeJ_G0019819.1 mouse_genomes_project 12 105577722 105585323 + MGP_C3HHeJ_P0035542 Serpina3n protein_coding protein_coding MGP_C3HHeJ_T0098844.1 MGP_C3HHeJ_G0037038.1 mouse_genomes_project 12 53402291 53402455 + Gm22513 snRNA snRNA MGP_C3HHeJ_T0035220.1 MGP_C3HHeJ_G0019715.1 mouse_genomes_project 12 86994972 87021581 - MGP_C3HHeJ_P0035220 Angel1 protein_coding protein_coding MGP_C3HHeJ_T0035221.1 MGP_C3HHeJ_G0019715.1 mouse_genomes_project 12 86996665 87000640 - Angel1 protein_coding processed_transcript MGP_C3HHeJ_T0035222.1 MGP_C3HHeJ_G0019715.1 mouse_genomes_project 12 86996783 87011769 - Angel1 protein_coding processed_transcript MGP_C3HHeJ_T0035223.1 MGP_C3HHeJ_G0019715.1 mouse_genomes_project 12 86996825 87000435 - Angel1 protein_coding processed_transcript MGP_C3HHeJ_T0035224.1 MGP_C3HHeJ_G0019715.1 mouse_genomes_project 12 86996909 87013313 - Angel1 protein_coding processed_transcript MGP_C3HHeJ_T0035225.1 MGP_C3HHeJ_G0019715.1 mouse_genomes_project 12 87013472 87017066 - Angel1 protein_coding processed_transcript MGP_C3HHeJ_T0100079.1 MGP_C3HHeJ_G0038273.1 mouse_genomes_project 12 48088160 48088288 - Gm25015 snoRNA snoRNA MGP_C3HHeJ_T0034247.1 MGP_C3HHeJ_G0019374.1 mouse_genomes_project 12 18963874 19001559 - MGP_C3HHeJ_P0034247 Ywhaq protein_coding protein_coding MGP_C3HHeJ_T0034248.1 MGP_C3HHeJ_G0019374.1 mouse_genomes_project 12 18968576 19001244 - MGP_C3HHeJ_P0034248 Ywhaq protein_coding unknown_likely_coding MGP_C3HHeJ_T0034249.1 MGP_C3HHeJ_G0019374.1 mouse_genomes_project 12 18979361 18981816 - Ywhaq protein_coding retained_intron MGP_C3HHeJ_T0000070.1 MGP_C3HHeJ_G0000056.1 mouse_genomes_project 12 115916561 115917039 - MGP_C3HHeJ_P0000070 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034703.1 MGP_C3HHeJ_G0019548.1 mouse_genomes_project 12 69571838 69578846 + MGP_C3HHeJ_P0034703 Gm3086 protein_coding protein_coding MGP_C3HHeJ_T0000243.1 MGP_C3HHeJ_G0000193.1 mouse_genomes_project 12 116498869 116499301 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0011230.1 MGP_C3HHeJ_G0009363.1 mouse_genomes_project 12 45248080 45248329 - Gm25051 misc_RNA misc_RNA MGP_C3HHeJ_T0006341.1 MGP_C3HHeJ_G0005277.1 mouse_genomes_project 12 69442727 69449680 + 4931403G20Rik lincRNA lincRNA MGP_C3HHeJ_T0035154.1 MGP_C3HHeJ_G0019694.1 mouse_genomes_project 12 85294658 85305354 - MGP_C3HHeJ_P0035154 Prox2 protein_coding protein_coding MGP_C3HHeJ_T0035155.1 MGP_C3HHeJ_G0019694.1 mouse_genomes_project 12 85295087 85314704 - MGP_C3HHeJ_P0035155 Prox2 protein_coding protein_coding MGP_C3HHeJ_T0035156.1 MGP_C3HHeJ_G0019694.1 mouse_genomes_project 12 85302295 85303888 - Prox2 protein_coding retained_intron MGP_C3HHeJ_T0000094.1 MGP_C3HHeJ_G0000072.1 mouse_genomes_project 12 116230843 116272118 - MGP_C3HHeJ_P0000094 Ighv6-6 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034990.1 MGP_C3HHeJ_G0019652.1 mouse_genomes_project 12 82240065 82515753 + MGP_C3HHeJ_P0034990 Sipa1l1 protein_coding protein_coding MGP_C3HHeJ_T0034991.1 MGP_C3HHeJ_G0019652.1 mouse_genomes_project 12 82377573 82515753 + MGP_C3HHeJ_P0034991 Sipa1l1 protein_coding protein_coding MGP_C3HHeJ_T0000830.1 MGP_C3HHeJ_G0000771.1 mouse_genomes_project 12 72656920 72657739 + TEC TEC MGP_C3HHeJ_T0009748.1 MGP_C3HHeJ_G0007881.1 mouse_genomes_project 12 111087343 111087404 - Mir3544 miRNA miRNA MGP_C3HHeJ_T0006357.1 MGP_C3HHeJ_G0005289.1 mouse_genomes_project 12 83733800 83734765 + Gm26623 lincRNA lincRNA MGP_C3HHeJ_T0034634.1 MGP_C3HHeJ_G0019519.1 mouse_genomes_project 12 64337124 64343792 + MGP_C3HHeJ_P0034634 Gm527 protein_coding protein_coding MGP_C3HHeJ_T0035619.1 MGP_C3HHeJ_G0019849.1 mouse_genomes_project 12 110153487 110171140 - MGP_C3HHeJ_P0035619 Degs2 protein_coding protein_coding MGP_C3HHeJ_T0035620.1 MGP_C3HHeJ_G0019849.1 mouse_genomes_project 12 110156915 110171140 - MGP_C3HHeJ_P0035620 Degs2 protein_coding protein_coding MGP_C3HHeJ_T0098865.1 MGP_C3HHeJ_G0037059.1 mouse_genomes_project 12 86944888 86944995 + Gm22004 snRNA snRNA MGP_C3HHeJ_T0034280.1 MGP_C3HHeJ_G0019387.1 mouse_genomes_project 12 25130255 25141242 - MGP_C3HHeJ_P0034280 Sox11 protein_coding protein_coding MGP_C3HHeJ_T0009729.1 MGP_C3HHeJ_G0007862.1 mouse_genomes_project 12 91784941 91786002 + miRNA miRNA MGP_C3HHeJ_T0009801.1 MGP_C3HHeJ_G0007934.1 mouse_genomes_project 12 111247059 111247127 + Mir377 miRNA miRNA MGP_C3HHeJ_T0000096.1 MGP_C3HHeJ_G0000074.1 mouse_genomes_project 12 116292581 116293039 - MGP_C3HHeJ_P0000096 Ighv6-7 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035183.1 MGP_C3HHeJ_G0019706.1 mouse_genomes_project 12 85921462 85945320 + MGP_C3HHeJ_P0035183 Batf protein_coding protein_coding MGP_C3HHeJ_T0012701.1 MGP_C3HHeJ_G0010805.1 mouse_genomes_project 12 87010112 87010571 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098868.1 MGP_C3HHeJ_G0037062.1 mouse_genomes_project 12 99380873 99380936 + Gm25486 snRNA snRNA MGP_C3HHeJ_T0035790.1 MGP_C3HHeJ_G0019902.1 mouse_genomes_project 12 114497391 114505834 + MGP_C3HHeJ_P0035790 Pld4 protein_coding protein_coding MGP_C3HHeJ_T0000089.1 MGP_C3HHeJ_G0000068.1 mouse_genomes_project 12 116177360 116177662 - MGP_C3HHeJ_P0000089 Ighv13-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000090.1 MGP_C3HHeJ_G0000068.1 mouse_genomes_project 12 116177360 116177820 - MGP_C3HHeJ_P0000090 Ighv13-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0006405.1 MGP_C3HHeJ_G0005323.1 mouse_genomes_project 12 111070138 111073234 - Gm26906 lincRNA lincRNA MGP_C3HHeJ_T0034401.1 MGP_C3HHeJ_G0019432.1 mouse_genomes_project 12 33593827 33630332 - MGP_C3HHeJ_P0034401 Ahr protein_coding protein_coding MGP_C3HHeJ_T0034402.1 MGP_C3HHeJ_G0019432.1 mouse_genomes_project 12 33600734 33629915 - MGP_C3HHeJ_P0034402 Ahr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034403.1 MGP_C3HHeJ_G0019432.1 mouse_genomes_project 12 33611052 33622019 - Ahr protein_coding retained_intron MGP_C3HHeJ_T0000247.1 MGP_C3HHeJ_G0000197.1 mouse_genomes_project 12 116924602 116925036 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0011235.1 MGP_C3HHeJ_G0009368.1 mouse_genomes_project 12 70587665 70587975 + Gm24857 misc_RNA misc_RNA MGP_C3HHeJ_T0006422.1 MGP_C3HHeJ_G0005329.1 mouse_genomes_project 12 112931725 112934318 + A230087F16Rik lincRNA lincRNA MGP_C3HHeJ_T0006423.1 MGP_C3HHeJ_G0005329.1 mouse_genomes_project 12 112931747 112940891 + A230087F16Rik lincRNA lincRNA MGP_C3HHeJ_T0000098.1 MGP_C3HHeJ_G0000076.1 mouse_genomes_project 12 116351306 116351740 - MGP_C3HHeJ_P0000098 Ighv1-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034555.1 MGP_C3HHeJ_G0019494.1 mouse_genomes_project 12 54381028 54382686 + MGP_C3HHeJ_P0034555 Aldoart2 protein_coding protein_coding MGP_C3HHeJ_T0000068.1 MGP_C3HHeJ_G0000054.1 mouse_genomes_project 12 115901238 115901702 - MGP_C3HHeJ_P0000068 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034489.1 MGP_C3HHeJ_G0019462.1 mouse_genomes_project 12 47882922 47892021 + MGP_C3HHeJ_P0034489 Gm43517 protein_coding protein_coding MGP_C3HHeJ_T0009794.1 MGP_C3HHeJ_G0007927.1 mouse_genomes_project 12 111240324 111240400 + Mir382 miRNA miRNA MGP_C3HHeJ_T0098838.1 MGP_C3HHeJ_G0037032.1 mouse_genomes_project 12 47507324 47507431 + Gm26454 snRNA snRNA MGP_C3HHeJ_T0100085.1 MGP_C3HHeJ_G0038279.1 mouse_genomes_project 12 58673706 58673837 + Gm22673 snoRNA snoRNA MGP_C3HHeJ_T0000826.1 MGP_C3HHeJ_G0000767.1 mouse_genomes_project 12 45598902 45599368 + TEC TEC MGP_C3HHeJ_T0034408.1 MGP_C3HHeJ_G0019435.1 mouse_genomes_project 12 34116798 34146531 - MGP_C3HHeJ_P0034408 Tspan13 protein_coding protein_coding MGP_C3HHeJ_T0034409.1 MGP_C3HHeJ_G0019435.1 mouse_genomes_project 12 34123912 34146542 - MGP_C3HHeJ_P0034409 Tspan13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034410.1 MGP_C3HHeJ_G0019435.1 mouse_genomes_project 12 34123923 34143971 - MGP_C3HHeJ_P0034410 Tspan13 protein_coding protein_coding MGP_C3HHeJ_T0098853.1 MGP_C3HHeJ_G0037047.1 mouse_genomes_project 12 64971992 64972095 + Gm25599 snRNA snRNA MGP_C3HHeJ_T0009740.1 MGP_C3HHeJ_G0007873.1 mouse_genomes_project 12 110244799 110244858 - Mir6988 miRNA miRNA MGP_C3HHeJ_T0012708.1 MGP_C3HHeJ_G0010812.1 mouse_genomes_project 12 96725799 96726153 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009697.1 MGP_C3HHeJ_G0007830.1 mouse_genomes_project 12 24164723 24164833 - Mir6538 miRNA miRNA MGP_C3HHeJ_T0035305.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91668887 92038893 - MGP_C3HHeJ_P0035305 Cep128 protein_coding protein_coding MGP_C3HHeJ_T0035306.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91668887 91918171 - MGP_C3HHeJ_P0035306 Cep128 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035307.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91669735 91729371 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035308.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91669737 91700798 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035309.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91669737 91700798 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035310.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91669960 91839071 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035311.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91692001 91839124 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035312.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91871107 91911276 - MGP_C3HHeJ_P0035312 Cep128 protein_coding protein_coding MGP_C3HHeJ_T0035313.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91939475 92038893 - Cep128 protein_coding retained_intron MGP_C3HHeJ_T0035314.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91972287 91986446 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035315.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91992061 92038843 - Cep128 protein_coding retained_intron MGP_C3HHeJ_T0035316.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 91993883 92038893 - Cep128 protein_coding processed_transcript MGP_C3HHeJ_T0035317.1 MGP_C3HHeJ_G0019740.1 mouse_genomes_project 12 92017355 92038837 - Cep128 protein_coding retained_intron MGP_C3HHeJ_T0000238.1 MGP_C3HHeJ_G0000188.1 mouse_genomes_project 12 116393447 116395414 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035040.1 MGP_C3HHeJ_G0019659.1 mouse_genomes_project 12 83804197 83851688 + MGP_C3HHeJ_P0035040 Psen1 protein_coding protein_coding MGP_C3HHeJ_T0035041.1 MGP_C3HHeJ_G0019659.1 mouse_genomes_project 12 83804557 83852774 + MGP_C3HHeJ_P0035041 Psen1 protein_coding protein_coding MGP_C3HHeJ_T0034985.1 MGP_C3HHeJ_G0019649.1 mouse_genomes_project 12 81716910 81751561 + MGP_C3HHeJ_P0034985 Ttc9 protein_coding protein_coding MGP_C3HHeJ_T0000031.1 MGP_C3HHeJ_G0000025.1 mouse_genomes_project 12 115215109 115215163 - MGP_C3HHeJ_P0000031 Ighj4 IG_J_gene IG_J_gene MGP_C3HHeJ_T0035847.1 MGP_C3HHeJ_G0019922.1 mouse_genomes_project 12 118321982 118386466 + Vipr2 protein_coding retained_intron MGP_C3HHeJ_T0035848.1 MGP_C3HHeJ_G0019922.1 mouse_genomes_project 12 118321984 118392749 + MGP_C3HHeJ_P0035848 Vipr2 protein_coding protein_coding MGP_C3HHeJ_T0035849.1 MGP_C3HHeJ_G0019922.1 mouse_genomes_project 12 118322016 118346021 + Vipr2 protein_coding processed_transcript MGP_C3HHeJ_T0035850.1 MGP_C3HHeJ_G0019922.1 mouse_genomes_project 12 118322022 118342417 + Vipr2 protein_coding processed_transcript MGP_C3HHeJ_T0035851.1 MGP_C3HHeJ_G0019922.1 mouse_genomes_project 12 118322029 118379822 + Vipr2 protein_coding processed_transcript MGP_C3HHeJ_T0035852.1 MGP_C3HHeJ_G0019922.1 mouse_genomes_project 12 118383844 118390235 + MGP_C3HHeJ_P0035852 Vipr2 protein_coding protein_coding MGP_C3HHeJ_T0035543.1 MGP_C3HHeJ_G0019820.1 mouse_genomes_project 12 105642306 105644428 - MGP_C3HHeJ_P0035543 Gsc protein_coding protein_coding MGP_C3HHeJ_T0034399.1 MGP_C3HHeJ_G0019431.1 mouse_genomes_project 12 33101812 33220632 + MGP_C3HHeJ_P0034399 Snx13 protein_coding protein_coding MGP_C3HHeJ_T0034400.1 MGP_C3HHeJ_G0019431.1 mouse_genomes_project 12 33101823 33203763 + MGP_C3HHeJ_P0034400 Snx13 protein_coding protein_coding MGP_C3HHeJ_T0011237.1 MGP_C3HHeJ_G0009370.1 mouse_genomes_project 12 76596006 76596288 + Gm24010 misc_RNA misc_RNA MGP_C3HHeJ_T0035045.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83915227 84046702 - MGP_C3HHeJ_P0035045 Numb protein_coding protein_coding MGP_C3HHeJ_T0035046.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83915229 84001179 - MGP_C3HHeJ_P0035046 Numb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035047.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83915264 84046612 - MGP_C3HHeJ_P0035047 Numb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035048.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83916632 83963946 - MGP_C3HHeJ_P0035048 Numb protein_coding protein_coding MGP_C3HHeJ_T0035049.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83916632 83963946 - MGP_C3HHeJ_P0035049 Numb protein_coding protein_coding MGP_C3HHeJ_T0035050.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83916632 83963946 - MGP_C3HHeJ_P0035050 Numb protein_coding protein_coding MGP_C3HHeJ_T0035051.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83925139 84046635 - MGP_C3HHeJ_P0035051 Numb protein_coding protein_coding MGP_C3HHeJ_T0035052.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83929298 84046624 - MGP_C3HHeJ_P0035052 Numb protein_coding protein_coding MGP_C3HHeJ_T0035053.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83929369 84046651 - MGP_C3HHeJ_P0035053 Numb protein_coding protein_coding MGP_C3HHeJ_T0035054.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83932337 84046658 - MGP_C3HHeJ_P0035054 Numb protein_coding protein_coding MGP_C3HHeJ_T0035055.1 MGP_C3HHeJ_G0019661.1 mouse_genomes_project 12 83953535 84001167 - Numb protein_coding retained_intron MGP_C3HHeJ_T0035635.1 MGP_C3HHeJ_G0019855.1 mouse_genomes_project 12 110532476 110554157 - MGP_C3HHeJ_P0035635 Begain protein_coding unknown_likely_coding MGP_C3HHeJ_T0035636.1 MGP_C3HHeJ_G0019855.1 mouse_genomes_project 12 110532486 110569489 - MGP_C3HHeJ_P0035636 Begain protein_coding protein_coding MGP_C3HHeJ_T0035637.1 MGP_C3HHeJ_G0019855.1 mouse_genomes_project 12 110534915 110537392 - Begain protein_coding retained_intron MGP_C3HHeJ_T0035638.1 MGP_C3HHeJ_G0019855.1 mouse_genomes_project 12 110537978 110554008 - Begain protein_coding processed_transcript MGP_C3HHeJ_T0012709.1 MGP_C3HHeJ_G0010813.1 mouse_genomes_project 12 100035122 100035373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100064.1 MGP_C3HHeJ_G0038258.1 mouse_genomes_project 12 18863006 18863140 + Gm25821 snoRNA snoRNA MGP_C3HHeJ_T0006363.1 MGP_C3HHeJ_G0005295.1 mouse_genomes_project 12 87680197 87683183 + Gm26764 lincRNA lincRNA MGP_C3HHeJ_T0034518.1 MGP_C3HHeJ_G0019478.1 mouse_genomes_project 12 52838709 52869183 - MGP_C3HHeJ_P0034518 Egln3 protein_coding protein_coding MGP_C3HHeJ_T0035127.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 84977900 85077192 - MGP_C3HHeJ_P0035127 Ltbp2 protein_coding protein_coding MGP_C3HHeJ_T0035128.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 84977901 85077155 - MGP_C3HHeJ_P0035128 Ltbp2 protein_coding protein_coding MGP_C3HHeJ_T0035129.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 84978017 85077139 - MGP_C3HHeJ_P0035129 Ltbp2 protein_coding protein_coding MGP_C3HHeJ_T0035130.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 84979894 84986532 - MGP_C3HHeJ_P0035130 Ltbp2 protein_coding protein_coding MGP_C3HHeJ_T0035131.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 84981067 84987660 - MGP_C3HHeJ_P0035131 Ltbp2 protein_coding protein_coding MGP_C3HHeJ_T0035132.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 84986547 84994152 - MGP_C3HHeJ_P0035132 Ltbp2 protein_coding protein_coding MGP_C3HHeJ_T0035133.1 MGP_C3HHeJ_G0019689.1 mouse_genomes_project 12 85002401 85077151 - Ltbp2 protein_coding retained_intron MGP_C3HHeJ_T0009815.1 MGP_C3HHeJ_G0007948.1 mouse_genomes_project 12 114465923 114465993 + Mir6940 miRNA miRNA MGP_C3HHeJ_T0003336.1 MGP_C3HHeJ_G0003065.1 mouse_genomes_project 12 80733696 80739664 - Plekhd1os antisense antisense MGP_C3HHeJ_T0012722.1 MGP_C3HHeJ_G0010826.1 mouse_genomes_project 12 109039771 109040613 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035441.1 MGP_C3HHeJ_G0019775.1 mouse_genomes_project 12 103337776 103362244 - MGP_C3HHeJ_P0035441 Lgmn protein_coding protein_coding MGP_C3HHeJ_T0035442.1 MGP_C3HHeJ_G0019775.1 mouse_genomes_project 12 103337790 103375750 - MGP_C3HHeJ_P0035442 Lgmn protein_coding protein_coding MGP_C3HHeJ_T0035443.1 MGP_C3HHeJ_G0019775.1 mouse_genomes_project 12 103343774 103351216 - Lgmn protein_coding retained_intron MGP_C3HHeJ_T0034484.1 MGP_C3HHeJ_G0019460.1 mouse_genomes_project 12 45100760 45232947 - MGP_C3HHeJ_P0034484 Nova1 protein_coding protein_coding MGP_C3HHeJ_T0035769.1 MGP_C3HHeJ_G0019894.1 mouse_genomes_project 12 114205155 114218162 + MGP_C3HHeJ_P0035769 A530016L24Rik protein_coding protein_coding MGP_C3HHeJ_T0035749.1 MGP_C3HHeJ_G0019887.1 mouse_genomes_project 12 113506090 113592929 - MGP_C3HHeJ_P0035749 Ppp1r13b protein_coding protein_coding MGP_C3HHeJ_T0035750.1 MGP_C3HHeJ_G0019887.1 mouse_genomes_project 12 113547384 113592914 - MGP_C3HHeJ_P0035750 Ppp1r13b protein_coding protein_coding MGP_C3HHeJ_T0035501.1 MGP_C3HHeJ_G0019796.1 mouse_genomes_project 12 104433942 104451632 - MGP_C3HHeJ_P0035501 Ifi27l2b protein_coding protein_coding MGP_C3HHeJ_T0009732.1 MGP_C3HHeJ_G0007865.1 mouse_genomes_project 12 101882796 101882892 - Mir1190 miRNA miRNA MGP_C3HHeJ_T0034923.1 MGP_C3HHeJ_G0019628.1 mouse_genomes_project 12 80123260 80129139 - MGP_C3HHeJ_P0034923 Zfp36l1 protein_coding protein_coding MGP_C3HHeJ_T0034924.1 MGP_C3HHeJ_G0019628.1 mouse_genomes_project 12 80124199 80129124 - MGP_C3HHeJ_P0034924 Zfp36l1 protein_coding protein_coding MGP_C3HHeJ_T0006347.1 MGP_C3HHeJ_G0005281.1 mouse_genomes_project 12 76295750 76296648 - 4930426I24Rik lincRNA lincRNA MGP_C3HHeJ_T0009779.1 MGP_C3HHeJ_G0007912.1 mouse_genomes_project 12 111223793 111223869 + Mir543 miRNA miRNA MGP_C3HHeJ_T0035074.1 MGP_C3HHeJ_G0019672.1 mouse_genomes_project 12 84308271 84310630 - MGP_C3HHeJ_P0035074 Pnma1 protein_coding protein_coding MGP_C3HHeJ_T0100113.1 MGP_C3HHeJ_G0038307.1 mouse_genomes_project 12 111158925 111158997 + Gm23508 snoRNA snoRNA MGP_C3HHeJ_T0034719.1 MGP_C3HHeJ_G0019553.1 mouse_genomes_project 12 69875488 69883062 - MGP_C3HHeJ_P0034719 Trim9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034720.1 MGP_C3HHeJ_G0019553.1 mouse_genomes_project 12 69875494 69979878 - MGP_C3HHeJ_P0034720 Trim9 protein_coding protein_coding MGP_C3HHeJ_T0034721.1 MGP_C3HHeJ_G0019553.1 mouse_genomes_project 12 69875494 69979878 - MGP_C3HHeJ_P0034721 Trim9 protein_coding protein_coding MGP_C3HHeJ_T0034722.1 MGP_C3HHeJ_G0019553.1 mouse_genomes_project 12 69894721 69979878 - MGP_C3HHeJ_P0034722 Trim9 protein_coding protein_coding MGP_C3HHeJ_T0098867.1 MGP_C3HHeJ_G0037061.1 mouse_genomes_project 12 96076987 96077094 - Gm26055 snRNA snRNA MGP_C3HHeJ_T0035748.1 MGP_C3HHeJ_G0019886.1 mouse_genomes_project 12 113490075 113506021 + MGP_C3HHeJ_P0035748 Zfyve21 protein_coding protein_coding MGP_C3HHeJ_T0006317.1 MGP_C3HHeJ_G0005258.1 mouse_genomes_project 12 8664102 8670682 + 4930511A02Rik lincRNA lincRNA MGP_C3HHeJ_T0034556.1 MGP_C3HHeJ_G0019495.1 mouse_genomes_project 12 54421482 54424581 + MGP_C3HHeJ_P0034556 Insm2 protein_coding protein_coding MGP_C3HHeJ_T0000240.1 MGP_C3HHeJ_G0000190.1 mouse_genomes_project 12 116421364 116421663 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034390.1 MGP_C3HHeJ_G0019424.1 mouse_genomes_project 12 31399169 31408968 + MGP_C3HHeJ_P0034390 Twistnb protein_coding protein_coding MGP_C3HHeJ_T0100127.1 MGP_C3HHeJ_G0038321.1 mouse_genomes_project 12 111196201 111196269 + Gm25224 snoRNA snoRNA MGP_C3HHeJ_T0035262.1 MGP_C3HHeJ_G0019729.1 mouse_genomes_project 12 87651919 87736523 - MGP_C3HHeJ_P0035262 Sptlc2 protein_coding protein_coding MGP_C3HHeJ_T0035263.1 MGP_C3HHeJ_G0019729.1 mouse_genomes_project 12 87654799 87690974 - Sptlc2 protein_coding retained_intron MGP_C3HHeJ_T0035264.1 MGP_C3HHeJ_G0019729.1 mouse_genomes_project 12 87656368 87676327 - Sptlc2 protein_coding processed_transcript MGP_C3HHeJ_T0035265.1 MGP_C3HHeJ_G0019729.1 mouse_genomes_project 12 87693583 87697508 - Sptlc2 protein_coding retained_intron MGP_C3HHeJ_T0035266.1 MGP_C3HHeJ_G0019729.1 mouse_genomes_project 12 87693859 87736409 - Sptlc2 protein_coding processed_transcript MGP_C3HHeJ_T0034218.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14760912 14802644 - MGP_C3HHeJ_P0034218 Atp6v1c2 protein_coding protein_coding MGP_C3HHeJ_T0034219.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14760913 14802635 - MGP_C3HHeJ_P0034219 Atp6v1c2 protein_coding protein_coding MGP_C3HHeJ_T0034220.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14760913 14802597 - MGP_C3HHeJ_P0034220 Atp6v1c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034221.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14760914 14785832 - MGP_C3HHeJ_P0034221 Atp6v1c2 protein_coding protein_coding MGP_C3HHeJ_T0034222.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14761050 14803089 - MGP_C3HHeJ_P0034222 Atp6v1c2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034223.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14775250 14807236 - MGP_C3HHeJ_P0034223 Atp6v1c2 protein_coding protein_coding MGP_C3HHeJ_T0034224.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14785719 14802662 - MGP_C3HHeJ_P0034224 Atp6v1c2 protein_coding protein_coding MGP_C3HHeJ_T0034225.1 MGP_C3HHeJ_G0019366.1 mouse_genomes_project 12 14785763 14807247 - MGP_C3HHeJ_P0034225 Atp6v1c2 protein_coding protein_coding MGP_C3HHeJ_T0009718.1 MGP_C3HHeJ_G0007851.1 mouse_genomes_project 12 76436137 76436216 - Mir5135 miRNA miRNA MGP_C3HHeJ_T0035058.1 MGP_C3HHeJ_G0019664.1 mouse_genomes_project 12 84081039 84112195 - MGP_C3HHeJ_P0035058 Heatr4 protein_coding protein_coding MGP_C3HHeJ_T0035117.1 MGP_C3HHeJ_G0019682.1 mouse_genomes_project 12 84618836 84652081 + MGP_C3HHeJ_P0035117 Lin52 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034507.1 MGP_C3HHeJ_G0019472.1 mouse_genomes_project 12 50596483 50614835 - MGP_C3HHeJ_P0034507 Dtd2 protein_coding protein_coding MGP_C3HHeJ_T0034508.1 MGP_C3HHeJ_G0019472.1 mouse_genomes_project 12 50605948 50614835 - MGP_C3HHeJ_P0034508 Dtd2 protein_coding protein_coding MGP_C3HHeJ_T0006329.1 MGP_C3HHeJ_G0005267.1 mouse_genomes_project 12 29403800 29404478 - Gm29541 lincRNA lincRNA MGP_C3HHeJ_T0098023.1 MGP_C3HHeJ_G0036235.1 mouse_genomes_project 12 119865687 119865793 + Gm24741 rRNA rRNA MGP_C3HHeJ_T0009777.1 MGP_C3HHeJ_G0007910.1 mouse_genomes_project 12 111222201 111222322 + Mir1193 miRNA miRNA MGP_C3HHeJ_T0101676.1 MGP_C3HHeJ_G0039641.1 mouse_genomes_project 12 104702130 104707170 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006421.1 MGP_C3HHeJ_G0005328.1 mouse_genomes_project 12 112423763 112426704 - Gm26912 lincRNA lincRNA MGP_C3HHeJ_T0034321.1 MGP_C3HHeJ_G0019404.1 mouse_genomes_project 12 28955111 28960940 + MGP_C3HHeJ_P0034321 Fam110c protein_coding protein_coding MGP_C3HHeJ_T0034152.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6109684 6168038 + MGP_C3HHeJ_P0034152 Wdr35 protein_coding protein_coding MGP_C3HHeJ_T0034153.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6109803 6128287 + Wdr35 protein_coding retained_intron MGP_C3HHeJ_T0034154.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6109803 6128287 + MGP_C3HHeJ_P0034154 Wdr35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034155.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6109839 6168037 + MGP_C3HHeJ_P0034155 Wdr35 protein_coding protein_coding MGP_C3HHeJ_T0034156.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6109851 6159273 + Wdr35 protein_coding retained_intron MGP_C3HHeJ_T0034157.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6110661 6122308 + Wdr35 protein_coding retained_intron MGP_C3HHeJ_T0034158.1 MGP_C3HHeJ_G0019339.1 mouse_genomes_project 12 6158879 6163655 + Wdr35 protein_coding retained_intron MGP_C3HHeJ_T0012673.1 MGP_C3HHeJ_G0010777.1 mouse_genomes_project 12 47646440 47647451 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012696.1 MGP_C3HHeJ_G0010800.1 mouse_genomes_project 12 81475709 81476021 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098854.1 MGP_C3HHeJ_G0037048.1 mouse_genomes_project 12 67133725 67133911 + Gm26256 snRNA snRNA MGP_C3HHeJ_T0011227.1 MGP_C3HHeJ_G0009360.1 mouse_genomes_project 12 15152544 15152863 - Gm25925 misc_RNA misc_RNA MGP_C3HHeJ_T0009786.1 MGP_C3HHeJ_G0007919.1 mouse_genomes_project 12 111230324 111230392 + Mir376a miRNA miRNA MGP_C3HHeJ_T0035797.1 MGP_C3HHeJ_G0019905.1 mouse_genomes_project 12 114557790 114566886 - MGP_C3HHeJ_P0035797 Cdca4 protein_coding protein_coding MGP_C3HHeJ_T0000833.1 MGP_C3HHeJ_G0000774.1 mouse_genomes_project 12 83199744 83200686 + TEC TEC MGP_C3HHeJ_T0034018.1 MGP_C3HHeJ_G0019304.1 mouse_genomes_project 12 131048 175243 + MGP_C3HHeJ_P0034018 Kif3c protein_coding protein_coding MGP_C3HHeJ_T0034160.1 MGP_C3HHeJ_G0019341.1 mouse_genomes_project 12 6742795 6749857 + MGP_C3HHeJ_P0034160 Osr1 protein_coding protein_coding MGP_C3HHeJ_T0034464.1 MGP_C3HHeJ_G0019453.1 mouse_genomes_project 12 38657587 39077611 + MGP_C3HHeJ_P0034464 Dock4 protein_coding protein_coding MGP_C3HHeJ_T0035605.1 MGP_C3HHeJ_G0019844.1 mouse_genomes_project 12 109644614 109719385 - MGP_C3HHeJ_P0035605 Ccdc85c protein_coding protein_coding MGP_C3HHeJ_T0034915.1 MGP_C3HHeJ_G0019625.1 mouse_genomes_project 12 79186236 79199972 + MGP_C3HHeJ_P0034915 Rdh12 protein_coding protein_coding MGP_C3HHeJ_T0034916.1 MGP_C3HHeJ_G0019625.1 mouse_genomes_project 12 79186253 79199971 + MGP_C3HHeJ_P0034916 Rdh12 protein_coding protein_coding MGP_C3HHeJ_T0034917.1 MGP_C3HHeJ_G0019625.1 mouse_genomes_project 12 79186269 79199971 + Rdh12 protein_coding retained_intron MGP_C3HHeJ_T0034918.1 MGP_C3HHeJ_G0019625.1 mouse_genomes_project 12 79186719 79199372 + MGP_C3HHeJ_P0034918 Rdh12 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034919.1 MGP_C3HHeJ_G0019625.1 mouse_genomes_project 12 79187983 79190078 + MGP_C3HHeJ_P0034919 Rdh12 protein_coding protein_coding MGP_C3HHeJ_T0006364.1 MGP_C3HHeJ_G0005296.1 mouse_genomes_project 12 87785701 87785834 - Gm29362 lincRNA lincRNA MGP_C3HHeJ_T0017081.1 MGP_C3HHeJ_G0014993.1 mouse_genomes_project 12 81612590 81613918 - Gm17191 processed_transcript processed_transcript MGP_C3HHeJ_T0006407.1 MGP_C3HHeJ_G0005325.1 mouse_genomes_project 12 111202311 111209319 + B830012L14Rik lincRNA lincRNA MGP_C3HHeJ_T0035157.1 MGP_C3HHeJ_G0019695.1 mouse_genomes_project 12 85319105 85343106 + MGP_C3HHeJ_P0035157 Dlst protein_coding protein_coding MGP_C3HHeJ_T0006386.1 MGP_C3HHeJ_G0005314.1 mouse_genomes_project 12 108475854 108498493 - Gm16086 lincRNA lincRNA MGP_C3HHeJ_T0003344.1 MGP_C3HHeJ_G0003073.1 mouse_genomes_project 12 85294647 85296502 + Prox2os antisense antisense MGP_C3HHeJ_T0101671.1 MGP_C3HHeJ_G0039637.1 mouse_genomes_project 12 47398908 47399148 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009746.1 MGP_C3HHeJ_G0007879.1 mouse_genomes_project 12 111081746 111081829 + Mir493 miRNA miRNA MGP_C3HHeJ_T0006343.1 MGP_C3HHeJ_G0005279.1 mouse_genomes_project 12 71048542 71049589 - 1700083H02Rik lincRNA lincRNA MGP_C3HHeJ_T0009799.1 MGP_C3HHeJ_G0007932.1 mouse_genomes_project 12 111244982 111245048 + Mir154 miRNA miRNA MGP_C3HHeJ_T0034818.1 MGP_C3HHeJ_G0019587.1 mouse_genomes_project 12 74106708 74108935 - MGP_C3HHeJ_P0034818 Gm11042 protein_coding protein_coding MGP_C3HHeJ_T0006378.1 MGP_C3HHeJ_G0005309.1 mouse_genomes_project 12 107811273 107817520 - 1700121N20Rik lincRNA lincRNA MGP_C3HHeJ_T0000104.1 MGP_C3HHeJ_G0000081.1 mouse_genomes_project 12 116439050 116439485 - MGP_C3HHeJ_P0000104 Ighv15-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000105.1 MGP_C3HHeJ_G0000081.1 mouse_genomes_project 12 116439050 116439485 - MGP_C3HHeJ_P0000105 Ighv15-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0003329.1 MGP_C3HHeJ_G0003060.1 mouse_genomes_project 12 68836154 68841829 - Gm15561 antisense antisense MGP_C3HHeJ_T0006327.1 MGP_C3HHeJ_G0005265.1 mouse_genomes_project 12 28269671 28325899 - 2310016D03Rik lincRNA lincRNA MGP_C3HHeJ_T0034852.1 MGP_C3HHeJ_G0019597.1 mouse_genomes_project 12 76143499 76210522 + MGP_C3HHeJ_P0034852 Mthfd1 protein_coding protein_coding MGP_C3HHeJ_T0100120.1 MGP_C3HHeJ_G0038314.1 mouse_genomes_project 12 111186048 111186123 + Gm23736 snoRNA snoRNA MGP_C3HHeJ_T0034777.1 MGP_C3HHeJ_G0019571.1 mouse_genomes_project 12 72333370 72350174 - MGP_C3HHeJ_P0034777 Dhrs7 protein_coding protein_coding MGP_C3HHeJ_T0012691.1 MGP_C3HHeJ_G0010795.1 mouse_genomes_project 12 74138744 74140632 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100073.1 MGP_C3HHeJ_G0038267.1 mouse_genomes_project 12 37640256 37640383 + Gm24069 snoRNA snoRNA MGP_C3HHeJ_T0100128.1 MGP_C3HHeJ_G0038322.1 mouse_genomes_project 12 113191447 113191574 + Snora28 snoRNA snoRNA MGP_C3HHeJ_T0035807.1 MGP_C3HHeJ_G0019913.1 mouse_genomes_project 12 114841033 114861782 + MGP_C3HHeJ_P0035807 Tex22 protein_coding protein_coding MGP_C3HHeJ_T0035808.1 MGP_C3HHeJ_G0019913.1 mouse_genomes_project 12 114841033 114861789 + MGP_C3HHeJ_P0035808 Tex22 protein_coding protein_coding MGP_C3HHeJ_T0035809.1 MGP_C3HHeJ_G0019913.1 mouse_genomes_project 12 114841292 114861789 + MGP_C3HHeJ_P0035809 Tex22 protein_coding protein_coding MGP_C3HHeJ_T0035810.1 MGP_C3HHeJ_G0019913.1 mouse_genomes_project 12 114841314 114841908 + MGP_C3HHeJ_P0035810 Tex22 protein_coding protein_coding MGP_C3HHeJ_T0034890.1 MGP_C3HHeJ_G0019611.1 mouse_genomes_project 12 77178525 77421531 + MGP_C3HHeJ_P0034890 Fut8 protein_coding protein_coding MGP_C3HHeJ_T0034891.1 MGP_C3HHeJ_G0019611.1 mouse_genomes_project 12 77178525 77421531 + MGP_C3HHeJ_P0034891 Fut8 protein_coding protein_coding MGP_C3HHeJ_T0034892.1 MGP_C3HHeJ_G0019611.1 mouse_genomes_project 12 77179486 77421873 + MGP_C3HHeJ_P0034892 Fut8 protein_coding protein_coding MGP_C3HHeJ_T0101684.1 MGP_C3HHeJ_G0039649.1 mouse_genomes_project 12 105525856 105531388 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0035511.1 MGP_C3HHeJ_G0019800.1 mouse_genomes_project 12 104670581 104677913 - MGP_C3HHeJ_P0035511 Serpina16 protein_coding protein_coding MGP_C3HHeJ_T0035512.1 MGP_C3HHeJ_G0019800.1 mouse_genomes_project 12 104670670 104677238 - MGP_C3HHeJ_P0035512 Serpina16 protein_coding protein_coding MGP_C3HHeJ_T0034338.1 MGP_C3HHeJ_G0019409.1 mouse_genomes_project 12 29384843 29403349 - MGP_C3HHeJ_P0034338 Cbll1 protein_coding protein_coding MGP_C3HHeJ_T0034339.1 MGP_C3HHeJ_G0019409.1 mouse_genomes_project 12 29384950 29403349 - MGP_C3HHeJ_P0034339 Cbll1 protein_coding protein_coding MGP_C3HHeJ_T0034340.1 MGP_C3HHeJ_G0019409.1 mouse_genomes_project 12 29387292 29403349 - MGP_C3HHeJ_P0034340 Cbll1 protein_coding protein_coding MGP_C3HHeJ_T0034341.1 MGP_C3HHeJ_G0019409.1 mouse_genomes_project 12 29387928 29403290 - MGP_C3HHeJ_P0034341 Cbll1 protein_coding protein_coding MGP_C3HHeJ_T0034342.1 MGP_C3HHeJ_G0019409.1 mouse_genomes_project 12 29387938 29403288 - MGP_C3HHeJ_P0034342 Cbll1 protein_coding protein_coding MGP_C3HHeJ_T0035683.1 MGP_C3HHeJ_G0019866.1 mouse_genomes_project 12 112457576 112478031 - MGP_C3HHeJ_P0035683 Cinp protein_coding protein_coding MGP_C3HHeJ_T0034583.1 MGP_C3HHeJ_G0019506.1 mouse_genomes_project 12 56491323 56553543 + MGP_C3HHeJ_P0034583 protein_coding protein_coding MGP_C3HHeJ_T0034584.1 MGP_C3HHeJ_G0019506.1 mouse_genomes_project 12 56507869 56677079 + MGP_C3HHeJ_P0034584 protein_coding protein_coding MGP_C3HHeJ_T0034585.1 MGP_C3HHeJ_G0019506.1 mouse_genomes_project 12 56582538 56584843 + MGP_C3HHeJ_P0034585 protein_coding protein_coding MGP_C3HHeJ_T0000834.1 MGP_C3HHeJ_G0000775.1 mouse_genomes_project 12 85309050 85310620 - TEC TEC MGP_C3HHeJ_T0035732.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113429939 113482746 + MGP_C3HHeJ_P0035732 Klc1 protein_coding protein_coding MGP_C3HHeJ_T0035733.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113430046 113470168 + MGP_C3HHeJ_P0035733 Klc1 protein_coding protein_coding MGP_C3HHeJ_T0035734.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113430103 113482698 + MGP_C3HHeJ_P0035734 Klc1 protein_coding protein_coding MGP_C3HHeJ_T0035735.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113444095 113470166 + MGP_C3HHeJ_P0035735 Klc1 protein_coding protein_coding MGP_C3HHeJ_T0035736.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113460450 113463080 + Klc1 protein_coding retained_intron MGP_C3HHeJ_T0035737.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113464623 113469669 + Klc1 protein_coding processed_transcript MGP_C3HHeJ_T0035738.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113470624 113482697 + Klc1 protein_coding retained_intron MGP_C3HHeJ_T0035744.1 MGP_C3HHeJ_G0019884.1 mouse_genomes_project 12 113481477 113482682 + Klc1 protein_coding retained_intron MGP_C3HHeJ_T0098851.1 MGP_C3HHeJ_G0037045.1 mouse_genomes_project 12 61100251 61100355 + Gm24750 snRNA snRNA MGP_C3HHeJ_T0034897.1 MGP_C3HHeJ_G0019614.1 mouse_genomes_project 12 78647400 78691456 + MGP_C3HHeJ_P0034897 Fam71d protein_coding protein_coding MGP_C3HHeJ_T0034317.1 MGP_C3HHeJ_G0019403.1 mouse_genomes_project 12 28793562 28845106 + Sh3yl1 protein_coding retained_intron MGP_C3HHeJ_T0034318.1 MGP_C3HHeJ_G0019403.1 mouse_genomes_project 12 28793562 28845250 + MGP_C3HHeJ_P0034318 Sh3yl1 protein_coding protein_coding MGP_C3HHeJ_T0034319.1 MGP_C3HHeJ_G0019403.1 mouse_genomes_project 12 28793586 28845239 + MGP_C3HHeJ_P0034319 Sh3yl1 protein_coding protein_coding MGP_C3HHeJ_T0034320.1 MGP_C3HHeJ_G0019403.1 mouse_genomes_project 12 28794081 28845244 + Sh3yl1 protein_coding processed_transcript MGP_C3HHeJ_T0009807.1 MGP_C3HHeJ_G0007940.1 mouse_genomes_project 12 111250264 111250345 + Mir410 miRNA miRNA MGP_C3HHeJ_T0034161.1 MGP_C3HHeJ_G0019342.1 mouse_genomes_project 12 7566525 7587629 + MGP_C3HHeJ_P0034161 Nt5c1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034162.1 MGP_C3HHeJ_G0019342.1 mouse_genomes_project 12 7566531 7587632 + MGP_C3HHeJ_P0034162 Nt5c1b protein_coding protein_coding MGP_C3HHeJ_T0034163.1 MGP_C3HHeJ_G0019342.1 mouse_genomes_project 12 7566531 7572273 + MGP_C3HHeJ_P0034163 Nt5c1b protein_coding protein_coding MGP_C3HHeJ_T0034164.1 MGP_C3HHeJ_G0019342.1 mouse_genomes_project 12 7566596 7587629 + MGP_C3HHeJ_P0034164 Nt5c1b protein_coding protein_coding MGP_C3HHeJ_T0034395.1 MGP_C3HHeJ_G0019428.1 mouse_genomes_project 12 32368367 32529169 - MGP_C3HHeJ_P0034395 Hdac9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034396.1 MGP_C3HHeJ_G0019428.1 mouse_genomes_project 12 32368380 32529275 - MGP_C3HHeJ_P0034396 Hdac9 protein_coding protein_coding MGP_C3HHeJ_T0000123.1 MGP_C3HHeJ_G0000093.1 mouse_genomes_project 12 118190341 118190773 - MGP_C3HHeJ_P0000123 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035716.1 MGP_C3HHeJ_G0019878.1 mouse_genomes_project 12 113182433 113198821 + MGP_C3HHeJ_P0035716 Eif5 protein_coding protein_coding MGP_C3HHeJ_T0035717.1 MGP_C3HHeJ_G0019878.1 mouse_genomes_project 12 113182893 113198821 + MGP_C3HHeJ_P0035717 Eif5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006406.1 MGP_C3HHeJ_G0005324.1 mouse_genomes_project 12 111144588 111146597 + Gm26945 lincRNA lincRNA MGP_C3HHeJ_T0035489.1 MGP_C3HHeJ_G0019793.1 mouse_genomes_project 12 104390699 104408504 - MGP_C3HHeJ_P0035489 Ddx24 protein_coding protein_coding MGP_C3HHeJ_T0035490.1 MGP_C3HHeJ_G0019793.1 mouse_genomes_project 12 104390699 104408591 - MGP_C3HHeJ_P0035490 Ddx24 protein_coding protein_coding MGP_C3HHeJ_T0009776.1 MGP_C3HHeJ_G0007909.1 mouse_genomes_project 12 111222107 111222181 + Mir679 miRNA miRNA MGP_C3HHeJ_T0034366.1 MGP_C3HHeJ_G0019418.1 mouse_genomes_project 12 30318462 30322698 + MGP_C3HHeJ_P0034366 Ccdc71l protein_coding protein_coding MGP_C3HHeJ_T0003337.1 MGP_C3HHeJ_G0003066.1 mouse_genomes_project 12 81300719 81315651 + Gm3693 antisense antisense MGP_C3HHeJ_T0009699.1 MGP_C3HHeJ_G0007832.1 mouse_genomes_project 12 28315891 28315995 - Gm25865 miRNA miRNA MGP_C3HHeJ_T0035703.1 MGP_C3HHeJ_G0019875.1 mouse_genomes_project 12 113063383 113075405 + MGP_C3HHeJ_P0035703 Exoc3l4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034251.1 MGP_C3HHeJ_G0019376.1 mouse_genomes_project 12 22156694 22241422 + MGP_C3HHeJ_P0034251 Taf1b protein_coding unknown_likely_coding MGP_C3HHeJ_T0034471.1 MGP_C3HHeJ_G0019456.1 mouse_genomes_project 12 42537613 42541785 - MGP_C3HHeJ_P0034471 Dnajb9 protein_coding protein_coding MGP_C3HHeJ_T0035606.1 MGP_C3HHeJ_G0019845.1 mouse_genomes_project 12 109750776 109780785 + MGP_C3HHeJ_P0035606 Hhipl1 protein_coding protein_coding MGP_C3HHeJ_T0100105.1 MGP_C3HHeJ_G0038299.1 mouse_genomes_project 12 111135375 111135450 + Gm24564 snoRNA snoRNA MGP_C3HHeJ_T0034670.1 MGP_C3HHeJ_G0019536.1 mouse_genomes_project 12 68806096 68807558 + Klhdc1 protein_coding processed_transcript MGP_C3HHeJ_T0034671.1 MGP_C3HHeJ_G0019536.1 mouse_genomes_project 12 68806749 68853457 + MGP_C3HHeJ_P0034671 Klhdc1 protein_coding protein_coding MGP_C3HHeJ_T0034672.1 MGP_C3HHeJ_G0019536.1 mouse_genomes_project 12 68806831 68807560 + Klhdc1 protein_coding processed_transcript MGP_C3HHeJ_T0034673.1 MGP_C3HHeJ_G0019536.1 mouse_genomes_project 12 68806835 68852144 + MGP_C3HHeJ_P0034673 Klhdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034175.1 MGP_C3HHeJ_G0019351.1 mouse_genomes_project 12 10221702 10222086 + MGP_C3HHeJ_P0034175 Rpl36-ps3 protein_coding protein_coding MGP_C3HHeJ_T0034485.1 MGP_C3HHeJ_G0019461.1 mouse_genomes_project 12 47880477 47882113 + Foxg1 protein_coding processed_transcript MGP_C3HHeJ_T0034486.1 MGP_C3HHeJ_G0019461.1 mouse_genomes_project 12 47880617 47881418 + Foxg1 protein_coding processed_transcript MGP_C3HHeJ_T0034487.1 MGP_C3HHeJ_G0019461.1 mouse_genomes_project 12 47880700 47884604 + MGP_C3HHeJ_P0034487 Foxg1 protein_coding protein_coding MGP_C3HHeJ_T0034488.1 MGP_C3HHeJ_G0019461.1 mouse_genomes_project 12 47880824 47884610 + MGP_C3HHeJ_P0034488 Foxg1 protein_coding protein_coding MGP_C3HHeJ_T0100069.1 MGP_C3HHeJ_G0038263.1 mouse_genomes_project 12 29147727 29147857 - Gm24613 snoRNA snoRNA MGP_C3HHeJ_T0035556.1 MGP_C3HHeJ_G0019831.1 mouse_genomes_project 12 106497483 106503471 - MGP_C3HHeJ_P0035556 Tcl1 protein_coding protein_coding MGP_C3HHeJ_T0035557.1 MGP_C3HHeJ_G0019831.1 mouse_genomes_project 12 106497491 106503450 - MGP_C3HHeJ_P0035557 Tcl1 protein_coding protein_coding MGP_C3HHeJ_T0035558.1 MGP_C3HHeJ_G0019831.1 mouse_genomes_project 12 106498041 106503440 - MGP_C3HHeJ_P0035558 Tcl1 protein_coding protein_coding MGP_C3HHeJ_T0035559.1 MGP_C3HHeJ_G0019831.1 mouse_genomes_project 12 106498231 106503527 - MGP_C3HHeJ_P0035559 Tcl1 protein_coding protein_coding MGP_C3HHeJ_T0035560.1 MGP_C3HHeJ_G0019831.1 mouse_genomes_project 12 106498327 106503430 - MGP_C3HHeJ_P0035560 Tcl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035561.1 MGP_C3HHeJ_G0019831.1 mouse_genomes_project 12 106499023 106503359 - Tcl1 protein_coding processed_transcript MGP_C3HHeJ_T0098015.1 MGP_C3HHeJ_G0036227.1 mouse_genomes_project 12 67009391 67009510 - n-R5s60 rRNA rRNA MGP_C3HHeJ_T0035532.1 MGP_C3HHeJ_G0019811.1 mouse_genomes_project 12 105245154 105254327 + MGP_C3HHeJ_P0035532 Serpina3a protein_coding protein_coding MGP_C3HHeJ_T0035533.1 MGP_C3HHeJ_G0019811.1 mouse_genomes_project 12 105245210 105254239 + MGP_C3HHeJ_P0035533 Serpina3a protein_coding protein_coding MGP_C3HHeJ_T0035534.1 MGP_C3HHeJ_G0019811.1 mouse_genomes_project 12 105248400 105253949 + MGP_C3HHeJ_P0035534 Serpina3a protein_coding protein_coding MGP_C3HHeJ_T0000221.1 MGP_C3HHeJ_G0000171.1 mouse_genomes_project 12 115681076 115681511 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035615.1 MGP_C3HHeJ_G0019848.1 mouse_genomes_project 12 110023773 110155208 + MGP_C3HHeJ_P0035615 Evl protein_coding protein_coding MGP_C3HHeJ_T0035616.1 MGP_C3HHeJ_G0019848.1 mouse_genomes_project 12 110023773 110155208 + MGP_C3HHeJ_P0035616 Evl protein_coding protein_coding MGP_C3HHeJ_T0035617.1 MGP_C3HHeJ_G0019848.1 mouse_genomes_project 12 110068840 110155208 + MGP_C3HHeJ_P0035617 Evl protein_coding protein_coding MGP_C3HHeJ_T0035618.1 MGP_C3HHeJ_G0019848.1 mouse_genomes_project 12 110100490 110155208 + MGP_C3HHeJ_P0035618 Evl protein_coding protein_coding MGP_C3HHeJ_T0100063.1 MGP_C3HHeJ_G0038257.1 mouse_genomes_project 12 15046499 15046635 + Gm22748 snoRNA snoRNA MGP_C3HHeJ_T0009767.1 MGP_C3HHeJ_G0007900.1 mouse_genomes_project 12 111217198 111217261 + Mir299a miRNA miRNA MGP_C3HHeJ_T0034226.1 MGP_C3HHeJ_G0019367.1 mouse_genomes_project 12 14826538 14911474 + MGP_C3HHeJ_P0034226 Nol10 protein_coding protein_coding MGP_C3HHeJ_T0034894.1 MGP_C3HHeJ_G0019613.1 mouse_genomes_project 12 78173248 78640634 + MGP_C3HHeJ_P0034894 Gphn protein_coding protein_coding MGP_C3HHeJ_T0034895.1 MGP_C3HHeJ_G0019613.1 mouse_genomes_project 12 78173248 78640634 + MGP_C3HHeJ_P0034895 Gphn protein_coding protein_coding MGP_C3HHeJ_T0034896.1 MGP_C3HHeJ_G0019613.1 mouse_genomes_project 12 78173371 78640633 + MGP_C3HHeJ_P0034896 Gphn protein_coding unknown_likely_coding MGP_C3HHeJ_T0034286.1 MGP_C3HHeJ_G0019391.1 mouse_genomes_project 12 26473955 26479067 - MGP_C3HHeJ_P0034286 Rps7 protein_coding protein_coding MGP_C3HHeJ_T0034212.1 MGP_C3HHeJ_G0019364.1 mouse_genomes_project 12 14647059 14651857 - MGP_C3HHeJ_P0034212 Kcnf1 protein_coding protein_coding MGP_C3HHeJ_T0035146.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85202911 85277818 + MGP_C3HHeJ_P0035146 Ylpm1 protein_coding protein_coding MGP_C3HHeJ_T0035147.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85202942 85277841 + MGP_C3HHeJ_P0035147 Ylpm1 protein_coding protein_coding MGP_C3HHeJ_T0035148.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85203045 85277840 + MGP_C3HHeJ_P0035148 Ylpm1 protein_coding protein_coding MGP_C3HHeJ_T0035149.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85222295 85277818 + MGP_C3HHeJ_P0035149 Ylpm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035150.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85249552 85266662 + Ylpm1 protein_coding retained_intron MGP_C3HHeJ_T0035151.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85257015 85257947 + Ylpm1 protein_coding retained_intron MGP_C3HHeJ_T0035152.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85267285 85277575 + Ylpm1 protein_coding retained_intron MGP_C3HHeJ_T0035153.1 MGP_C3HHeJ_G0019693.1 mouse_genomes_project 12 85272004 85277741 + Ylpm1 protein_coding retained_intron MGP_C3HHeJ_T0011244.1 MGP_C3HHeJ_G0009377.1 mouse_genomes_project 12 111040172 111040255 + Gm27596 misc_RNA misc_RNA MGP_C3HHeJ_T0000823.1 MGP_C3HHeJ_G0000764.1 mouse_genomes_project 12 8437448 8438198 - TEC TEC MGP_C3HHeJ_T0000082.1 MGP_C3HHeJ_G0000064.1 mouse_genomes_project 12 116081350 116081649 - MGP_C3HHeJ_P0000082 Ighv3-5 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000083.1 MGP_C3HHeJ_G0000064.1 mouse_genomes_project 12 116081350 116081786 - MGP_C3HHeJ_P0000083 Ighv3-5 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034274.1 MGP_C3HHeJ_G0019384.1 mouse_genomes_project 12 24047085 24165079 - MGP_C3HHeJ_P0034274 Rnf144a protein_coding protein_coding MGP_C3HHeJ_T0034275.1 MGP_C3HHeJ_G0019384.1 mouse_genomes_project 12 24047085 24165079 - MGP_C3HHeJ_P0034275 Rnf144a protein_coding protein_coding MGP_C3HHeJ_T0035254.1 MGP_C3HHeJ_G0019725.1 mouse_genomes_project 12 87565063 87577360 - MGP_C3HHeJ_P0035254 Noxred1 protein_coding protein_coding MGP_C3HHeJ_T0035210.1 MGP_C3HHeJ_G0019711.1 mouse_genomes_project 12 86346885 86433279 + MGP_C3HHeJ_P0035210 Ift43 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035211.1 MGP_C3HHeJ_G0019711.1 mouse_genomes_project 12 86346895 86433272 + MGP_C3HHeJ_P0035211 Ift43 protein_coding protein_coding MGP_C3HHeJ_T0034921.1 MGP_C3HHeJ_G0019627.1 mouse_genomes_project 12 79281751 79500671 + MGP_C3HHeJ_P0034921 Rad51b protein_coding protein_coding MGP_C3HHeJ_T0034922.1 MGP_C3HHeJ_G0019627.1 mouse_genomes_project 12 79281751 79314970 + MGP_C3HHeJ_P0034922 Rad51b protein_coding protein_coding MGP_C3HHeJ_T0098833.1 MGP_C3HHeJ_G0037027.1 mouse_genomes_project 12 10856945 10857052 - Gm24142 snRNA snRNA MGP_C3HHeJ_T0035819.1 MGP_C3HHeJ_G0019915.1 mouse_genomes_project 12 114911614 114916870 + MGP_C3HHeJ_P0035819 Crip2 protein_coding protein_coding MGP_C3HHeJ_T0035820.1 MGP_C3HHeJ_G0019915.1 mouse_genomes_project 12 114911950 114916467 + MGP_C3HHeJ_P0035820 Crip2 protein_coding protein_coding MGP_C3HHeJ_T0035821.1 MGP_C3HHeJ_G0019915.1 mouse_genomes_project 12 114914186 114916494 + MGP_C3HHeJ_P0035821 Crip2 protein_coding protein_coding MGP_C3HHeJ_T0035822.1 MGP_C3HHeJ_G0019915.1 mouse_genomes_project 12 114914711 114916333 + Crip2 protein_coding retained_intron MGP_C3HHeJ_T0035823.1 MGP_C3HHeJ_G0019915.1 mouse_genomes_project 12 114914840 114915595 + Crip2 protein_coding retained_intron MGP_C3HHeJ_T0035824.1 MGP_C3HHeJ_G0019915.1 mouse_genomes_project 12 114915449 114916068 + Crip2 protein_coding retained_intron MGP_C3HHeJ_T0034276.1 MGP_C3HHeJ_G0019385.1 mouse_genomes_project 12 24195226 24208918 - MGP_C3HHeJ_P0034276 Rsad2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034277.1 MGP_C3HHeJ_G0019385.1 mouse_genomes_project 12 24195226 24208939 - MGP_C3HHeJ_P0034277 Rsad2 protein_coding protein_coding MGP_C3HHeJ_T0034278.1 MGP_C3HHeJ_G0019385.1 mouse_genomes_project 12 24203122 24207347 - Rsad2 protein_coding processed_transcript MGP_C3HHeJ_T0035176.1 MGP_C3HHeJ_G0019704.1 mouse_genomes_project 12 85698729 85702106 + MGP_C3HHeJ_P0035176 Fos protein_coding protein_coding MGP_C3HHeJ_T0035177.1 MGP_C3HHeJ_G0019704.1 mouse_genomes_project 12 85699530 85701018 + Fos protein_coding processed_transcript MGP_C3HHeJ_T0035178.1 MGP_C3HHeJ_G0019704.1 mouse_genomes_project 12 85699530 85700840 + Fos protein_coding processed_transcript MGP_C3HHeJ_T0035179.1 MGP_C3HHeJ_G0019704.1 mouse_genomes_project 12 85699750 85700896 + Fos protein_coding processed_transcript MGP_C3HHeJ_T0098831.1 MGP_C3HHeJ_G0037025.1 mouse_genomes_project 12 7016331 7016435 - Gm22845 snRNA snRNA MGP_C3HHeJ_T0035872.1 MGP_C3HHeJ_G0019932.1 mouse_genomes_project 12 121205870 121307377 - MGP_C3HHeJ_P0035872 Abcb5 protein_coding protein_coding MGP_C3HHeJ_T0035873.1 MGP_C3HHeJ_G0019932.1 mouse_genomes_project 12 121223973 121228593 - Abcb5 protein_coding retained_intron MGP_C3HHeJ_T0035874.1 MGP_C3HHeJ_G0019932.1 mouse_genomes_project 12 121224446 121264480 - Abcb5 protein_coding processed_transcript MGP_C3HHeJ_T0034908.1 MGP_C3HHeJ_G0019623.1 mouse_genomes_project 12 79130305 79146985 - MGP_C3HHeJ_P0034908 Vti1b protein_coding protein_coding MGP_C3HHeJ_T0034909.1 MGP_C3HHeJ_G0019623.1 mouse_genomes_project 12 79130458 79146766 - MGP_C3HHeJ_P0034909 Vti1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034910.1 MGP_C3HHeJ_G0019623.1 mouse_genomes_project 12 79130617 79139460 - MGP_C3HHeJ_P0034910 Vti1b protein_coding protein_coding MGP_C3HHeJ_T0034911.1 MGP_C3HHeJ_G0019623.1 mouse_genomes_project 12 79130805 79140689 - MGP_C3HHeJ_P0034911 Vti1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034413.1 MGP_C3HHeJ_G0019438.1 mouse_genomes_project 12 34263947 34306889 + MGP_C3HHeJ_P0034413 Ankmy2 protein_coding protein_coding MGP_C3HHeJ_T0035676.1 MGP_C3HHeJ_G0019864.1 mouse_genomes_project 12 112382310 112422427 - Mok protein_coding retained_intron MGP_C3HHeJ_T0035677.1 MGP_C3HHeJ_G0019864.1 mouse_genomes_project 12 112382310 112422418 - MGP_C3HHeJ_P0035677 Mok protein_coding protein_coding MGP_C3HHeJ_T0035678.1 MGP_C3HHeJ_G0019864.1 mouse_genomes_project 12 112382310 112422427 - MGP_C3HHeJ_P0035678 Mok protein_coding protein_coding MGP_C3HHeJ_T0035679.1 MGP_C3HHeJ_G0019864.1 mouse_genomes_project 12 112382553 112422240 - MGP_C3HHeJ_P0035679 Mok protein_coding unknown_likely_coding MGP_C3HHeJ_T0035680.1 MGP_C3HHeJ_G0019864.1 mouse_genomes_project 12 112390116 112422415 - MGP_C3HHeJ_P0035680 Mok protein_coding protein_coding MGP_C3HHeJ_T0034888.1 MGP_C3HHeJ_G0019610.1 mouse_genomes_project 12 76858608 76883744 - MGP_C3HHeJ_P0034888 Max protein_coding protein_coding MGP_C3HHeJ_T0034889.1 MGP_C3HHeJ_G0019610.1 mouse_genomes_project 12 76858608 76883744 - MGP_C3HHeJ_P0034889 Max protein_coding protein_coding MGP_C3HHeJ_T0003335.1 MGP_C3HHeJ_G0003064.1 mouse_genomes_project 12 79973437 79973742 + Gm28056 antisense antisense MGP_C3HHeJ_T0006366.1 MGP_C3HHeJ_G0005298.1 mouse_genomes_project 12 91428157 91639639 - 4930544I03Rik lincRNA lincRNA MGP_C3HHeJ_T0100119.1 MGP_C3HHeJ_G0038313.1 mouse_genomes_project 12 111185193 111185262 + AF357428 snoRNA snoRNA MGP_C3HHeJ_T0000081.1 MGP_C3HHeJ_G0000063.1 mouse_genomes_project 12 116073203 116073638 - MGP_C3HHeJ_P0000081 Ighv3-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0101498.1 MGP_C3HHeJ_G0039488.1 mouse_genomes_project 12 61418658 61421950 + translated_unprocessed_pseudogene translated_unprocessed_pseudogene MGP_C3HHeJ_T0100093.1 MGP_C3HHeJ_G0038287.1 mouse_genomes_project 12 77753598 77753728 - Gm24070 snoRNA snoRNA MGP_C3HHeJ_T0098017.1 MGP_C3HHeJ_G0036229.1 mouse_genomes_project 12 82220930 82221026 + n-R5s62 rRNA rRNA MGP_C3HHeJ_T0034735.1 MGP_C3HHeJ_G0019557.1 mouse_genomes_project 12 70674554 70752937 + MGP_C3HHeJ_P0034735 Arid4a protein_coding protein_coding MGP_C3HHeJ_T0034736.1 MGP_C3HHeJ_G0019557.1 mouse_genomes_project 12 70674593 70727095 + Arid4a protein_coding processed_transcript MGP_C3HHeJ_T0034737.1 MGP_C3HHeJ_G0019557.1 mouse_genomes_project 12 70675272 70706753 + MGP_C3HHeJ_P0034737 Arid4a protein_coding protein_coding MGP_C3HHeJ_T0034738.1 MGP_C3HHeJ_G0019557.1 mouse_genomes_project 12 70707754 70735791 + MGP_C3HHeJ_P0034738 Arid4a protein_coding protein_coding MGP_C3HHeJ_T0009783.1 MGP_C3HHeJ_G0007916.1 mouse_genomes_project 12 111229739 111229823 + Mir654 miRNA miRNA MGP_C3HHeJ_T0098856.1 MGP_C3HHeJ_G0037050.1 mouse_genomes_project 12 69161190 69161296 - Gm24449 snRNA snRNA MGP_C3HHeJ_T0012719.1 MGP_C3HHeJ_G0010823.1 mouse_genomes_project 12 107920949 107922427 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034492.1 MGP_C3HHeJ_G0019465.1 mouse_genomes_project 12 49916965 49954157 + MGP_C3HHeJ_P0034492 G2e3 protein_coding protein_coding MGP_C3HHeJ_T0034493.1 MGP_C3HHeJ_G0019465.1 mouse_genomes_project 12 49917192 49950438 + MGP_C3HHeJ_P0034493 G2e3 protein_coding protein_coding MGP_C3HHeJ_T0034494.1 MGP_C3HHeJ_G0019465.1 mouse_genomes_project 12 49917276 49950541 + MGP_C3HHeJ_P0034494 G2e3 protein_coding protein_coding MGP_C3HHeJ_T0034495.1 MGP_C3HHeJ_G0019465.1 mouse_genomes_project 12 49927075 49940704 + G2e3 protein_coding retained_intron MGP_C3HHeJ_T0034496.1 MGP_C3HHeJ_G0019465.1 mouse_genomes_project 12 49947845 49951248 + G2e3 protein_coding retained_intron MGP_C3HHeJ_T0034170.1 MGP_C3HHeJ_G0019347.1 mouse_genomes_project 12 8483120 8539132 + MGP_C3HHeJ_P0034170 Smc6 protein_coding protein_coding MGP_C3HHeJ_T0034393.1 MGP_C3HHeJ_G0019427.1 mouse_genomes_project 12 32083418 32315699 - MGP_C3HHeJ_P0034393 Gm18025 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034394.1 MGP_C3HHeJ_G0019427.1 mouse_genomes_project 12 32282427 32283247 - MGP_C3HHeJ_P0034394 Gm18025 protein_coding protein_coding MGP_C3HHeJ_T0017086.1 MGP_C3HHeJ_G0014996.1 mouse_genomes_project 12 100081868 100085881 - Gm20682 processed_transcript processed_transcript MGP_C3HHeJ_T0003315.1 MGP_C3HHeJ_G0003048.1 mouse_genomes_project 12 651558 654513 - Dnmt3aos antisense antisense MGP_C3HHeJ_T0009772.1 MGP_C3HHeJ_G0007905.1 mouse_genomes_project 12 111219068 111219154 + Mir323 miRNA miRNA MGP_C3HHeJ_T0035801.1 MGP_C3HHeJ_G0019909.1 mouse_genomes_project 12 114713810 114756916 - MGP_C3HHeJ_P0035801 Brf1 protein_coding protein_coding MGP_C3HHeJ_T0035802.1 MGP_C3HHeJ_G0019909.1 mouse_genomes_project 12 114714269 114729667 - MGP_C3HHeJ_P0035802 Brf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034490.1 MGP_C3HHeJ_G0019463.1 mouse_genomes_project 12 47899170 47899731 + MGP_C3HHeJ_P0034490 Gm9804 protein_coding protein_coding MGP_C3HHeJ_T0100089.1 MGP_C3HHeJ_G0038283.1 mouse_genomes_project 12 65004389 65004521 - Gm23948 snoRNA snoRNA MGP_C3HHeJ_T0034330.1 MGP_C3HHeJ_G0019407.1 mouse_genomes_project 12 29220420 29241782 - MGP_C3HHeJ_P0034330 Dld protein_coding protein_coding MGP_C3HHeJ_T0009752.1 MGP_C3HHeJ_G0007885.1 mouse_genomes_project 12 111090122 111090211 + Mir3070b miRNA miRNA MGP_C3HHeJ_T0034929.1 MGP_C3HHeJ_G0019631.1 mouse_genomes_project 12 80495252 80533618 + MGP_C3HHeJ_P0034929 Exd2 protein_coding protein_coding MGP_C3HHeJ_T0034586.1 MGP_C3HHeJ_G0019507.1 mouse_genomes_project 12 57134552 57136671 + MGP_C3HHeJ_P0034586 Sstr1 protein_coding protein_coding MGP_C3HHeJ_T0034587.1 MGP_C3HHeJ_G0019507.1 mouse_genomes_project 12 57134584 57137224 + MGP_C3HHeJ_P0034587 Sstr1 protein_coding protein_coding MGP_C3HHeJ_T0000219.1 MGP_C3HHeJ_G0000169.1 mouse_genomes_project 12 115406301 115411739 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000026.1 MGP_C3HHeJ_G0000020.1 mouse_genomes_project 12 115342557 115342574 - MGP_C3HHeJ_P0000026 Ighd3-1 IG_D_gene IG_D_gene MGP_C3HHeJ_T0006392.1 MGP_C3HHeJ_G0005319.1 mouse_genomes_project 12 109176558 109216096 - Gm15208 lincRNA lincRNA MGP_C3HHeJ_T0034678.1 MGP_C3HHeJ_G0019538.1 mouse_genomes_project 12 68882121 68930307 - MGP_C3HHeJ_P0034678 Nemf protein_coding protein_coding MGP_C3HHeJ_T0000007.1 MGP_C3HHeJ_G0000005.1 mouse_genomes_project 12 115063517 115065144 - MGP_C3HHeJ_P0000007 Ighg2c IG_C_gene IG_C_gene MGP_C3HHeJ_T0000225.1 MGP_C3HHeJ_G0000175.1 mouse_genomes_project 12 115787293 115787590 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034187.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14124503 14216268 - MGP_C3HHeJ_P0034187 Greb1 protein_coding protein_coding MGP_C3HHeJ_T0034188.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14124503 14264277 - MGP_C3HHeJ_P0034188 Greb1 protein_coding protein_coding MGP_C3HHeJ_T0034189.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14125968 14216222 - MGP_C3HHeJ_P0034189 Greb1 protein_coding protein_coding MGP_C3HHeJ_T0034190.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14127710 14128942 - Greb1 protein_coding retained_intron MGP_C3HHeJ_T0034191.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14139242 14147221 - Greb1 protein_coding retained_intron MGP_C3HHeJ_T0034192.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14146949 14199248 - Greb1 protein_coding retained_intron MGP_C3HHeJ_T0034193.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14158780 14165757 - Greb1 protein_coding retained_intron MGP_C3HHeJ_T0034194.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14163874 14166168 - Greb1 protein_coding retained_intron MGP_C3HHeJ_T0034195.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14163885 14166308 - MGP_C3HHeJ_P0034195 Greb1 protein_coding protein_coding MGP_C3HHeJ_T0034196.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14165619 14169494 - MGP_C3HHeJ_P0034196 Greb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034197.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14180892 14199149 - Greb1 protein_coding retained_intron MGP_C3HHeJ_T0034198.1 MGP_C3HHeJ_G0019359.1 mouse_genomes_project 12 14192294 14264474 - MGP_C3HHeJ_P0034198 Greb1 protein_coding protein_coding MGP_C3HHeJ_T0006313.1 MGP_C3HHeJ_G0005254.1 mouse_genomes_project 12 4349487 4357703 - 1700101O22Rik lincRNA lincRNA MGP_C3HHeJ_T0100108.1 MGP_C3HHeJ_G0038302.1 mouse_genomes_project 12 111145269 111145342 + Gm24899 snoRNA snoRNA MGP_C3HHeJ_T0006344.1 MGP_C3HHeJ_G0005280.1 mouse_genomes_project 12 74075105 74087580 + lincRNA lincRNA MGP_C3HHeJ_T0006345.1 MGP_C3HHeJ_G0005280.1 mouse_genomes_project 12 74075113 74087594 + lincRNA lincRNA MGP_C3HHeJ_T0006346.1 MGP_C3HHeJ_G0005280.1 mouse_genomes_project 12 74079559 74087594 + lincRNA lincRNA MGP_C3HHeJ_T0034766.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72122944 72195135 + MGP_C3HHeJ_P0034766 Lrrc9 protein_coding protein_coding MGP_C3HHeJ_T0034767.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123011 72181807 + MGP_C3HHeJ_P0034767 Lrrc9 protein_coding protein_coding MGP_C3HHeJ_T0034768.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123027 72149041 + Lrrc9 protein_coding retained_intron MGP_C3HHeJ_T0034769.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123113 72198904 + Lrrc9 protein_coding processed_transcript MGP_C3HHeJ_T0034770.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123320 72135744 + Lrrc9 protein_coding retained_intron MGP_C3HHeJ_T0034771.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123327 72155737 + Lrrc9 protein_coding retained_intron MGP_C3HHeJ_T0034772.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123462 72196953 + MGP_C3HHeJ_P0034772 Lrrc9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034773.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72123465 72198849 + MGP_C3HHeJ_P0034773 Lrrc9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034774.1 MGP_C3HHeJ_G0019568.1 mouse_genomes_project 12 72157600 72159188 + Lrrc9 protein_coding retained_intron MGP_C3HHeJ_T0006314.1 MGP_C3HHeJ_G0005255.1 mouse_genomes_project 12 5882703 5888983 - Gm4755 lincRNA lincRNA MGP_C3HHeJ_T0035551.1 MGP_C3HHeJ_G0019827.1 mouse_genomes_project 12 106388001 106437307 + MGP_C3HHeJ_P0035551 Tcl1b2 protein_coding protein_coding MGP_C3HHeJ_T0035554.1 MGP_C3HHeJ_G0019827.1 mouse_genomes_project 12 106435217 106437524 + MGP_C3HHeJ_P0035554 Tcl1b2 protein_coding protein_coding MGP_C3HHeJ_T0035488.1 MGP_C3HHeJ_G0019792.1 mouse_genomes_project 12 104389545 104390544 - MGP_C3HHeJ_P0035488 9330161L09Rik protein_coding protein_coding MGP_C3HHeJ_T0006369.1 MGP_C3HHeJ_G0005301.1 mouse_genomes_project 12 100430927 100432849 - 1700064M15Rik lincRNA lincRNA MGP_C3HHeJ_T0000091.1 MGP_C3HHeJ_G0000069.1 mouse_genomes_project 12 116187240 116187674 - MGP_C3HHeJ_P0000091 Ighv12-3 IG_V_gene IG_V_gene MGP_C3HHeJ_T0100072.1 MGP_C3HHeJ_G0038266.1 mouse_genomes_project 12 34489592 34489702 - Gm25438 snoRNA snoRNA MGP_C3HHeJ_T0000067.1 MGP_C3HHeJ_G0000053.1 mouse_genomes_project 12 115884326 115884757 - MGP_C3HHeJ_P0000067 Ighv3-1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0009715.1 MGP_C3HHeJ_G0007848.1 mouse_genomes_project 12 71812596 71812705 - Gm24466 miRNA miRNA MGP_C3HHeJ_T0012712.1 MGP_C3HHeJ_G0010816.1 mouse_genomes_project 12 102537361 102537708 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011231.1 MGP_C3HHeJ_G0009364.1 mouse_genomes_project 12 55105984 55106269 - Gm24685 misc_RNA misc_RNA MGP_C3HHeJ_T0009770.1 MGP_C3HHeJ_G0007903.1 mouse_genomes_project 12 111218363 111218424 + Mir380 miRNA miRNA MGP_C3HHeJ_T0009804.1 MGP_C3HHeJ_G0007937.1 mouse_genomes_project 12 111249707 111249786 + Mir409 miRNA miRNA MGP_C3HHeJ_T0034199.1 MGP_C3HHeJ_G0019360.1 mouse_genomes_project 12 14276403 14291776 + MGP_C3HHeJ_P0034199 E2f6 protein_coding protein_coding MGP_C3HHeJ_T0034200.1 MGP_C3HHeJ_G0019360.1 mouse_genomes_project 12 14279370 14290806 + MGP_C3HHeJ_P0034200 E2f6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035373.1 MGP_C3HHeJ_G0019755.1 mouse_genomes_project 12 100532423 100700633 - MGP_C3HHeJ_P0035373 Efcab11 protein_coding protein_coding MGP_C3HHeJ_T0000112.1 MGP_C3HHeJ_G0000085.1 mouse_genomes_project 12 116516966 116517400 - MGP_C3HHeJ_P0000112 Ighv1-23 IG_V_gene IG_V_gene MGP_C3HHeJ_T0100123.1 MGP_C3HHeJ_G0038317.1 mouse_genomes_project 12 111188252 111188327 + Gm25856 snoRNA snoRNA MGP_C3HHeJ_T0009696.1 MGP_C3HHeJ_G0007829.1 mouse_genomes_project 12 14833475 14833558 + Mir3066 miRNA miRNA MGP_C3HHeJ_T0098834.1 MGP_C3HHeJ_G0037028.1 mouse_genomes_project 12 11925680 11925787 + Gm25414 snRNA snRNA MGP_C3HHeJ_T0000235.1 MGP_C3HHeJ_G0000185.1 mouse_genomes_project 12 116171278 116171569 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034554.1 MGP_C3HHeJ_G0019493.1 mouse_genomes_project 12 54297933 54301170 - MGP_C3HHeJ_P0034554 Nfkbia protein_coding protein_coding MGP_C3HHeJ_T0000006.1 MGP_C3HHeJ_G0000004.1 mouse_genomes_project 12 115047002 115049077 - MGP_C3HHeJ_P0000006 Ighe IG_C_gene IG_C_gene MGP_C3HHeJ_T0034297.1 MGP_C3HHeJ_G0019397.1 mouse_genomes_project 12 27798721 27880878 + MGP_C3HHeJ_P0034297 Pxdn protein_coding protein_coding MGP_C3HHeJ_T0034298.1 MGP_C3HHeJ_G0019397.1 mouse_genomes_project 12 27798735 27850605 + Pxdn protein_coding retained_intron MGP_C3HHeJ_T0034299.1 MGP_C3HHeJ_G0019397.1 mouse_genomes_project 12 27798735 27850053 + MGP_C3HHeJ_P0034299 Pxdn protein_coding protein_coding MGP_C3HHeJ_T0034300.1 MGP_C3HHeJ_G0019397.1 mouse_genomes_project 12 27857495 27863399 + Pxdn protein_coding processed_transcript MGP_C3HHeJ_T0034301.1 MGP_C3HHeJ_G0019397.1 mouse_genomes_project 12 27857501 27860838 + Pxdn protein_coding retained_intron MGP_C3HHeJ_T0034302.1 MGP_C3HHeJ_G0019397.1 mouse_genomes_project 12 27860866 27863541 + Pxdn protein_coding retained_intron MGP_C3HHeJ_T0000249.1 MGP_C3HHeJ_G0000199.1 mouse_genomes_project 12 117556704 117557786 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034285.1 MGP_C3HHeJ_G0019390.1 mouse_genomes_project 12 26435669 26466082 - MGP_C3HHeJ_P0034285 Colec11 protein_coding protein_coding MGP_C3HHeJ_T0101672.1 MGP_C3HHeJ_G0039638.1 mouse_genomes_project 12 61418658 61421950 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009796.1 MGP_C3HHeJ_G0007929.1 mouse_genomes_project 12 111241285 111241351 + Mir668 miRNA miRNA MGP_C3HHeJ_T0035125.1 MGP_C3HHeJ_G0019687.1 mouse_genomes_project 12 84947281 84966818 - MGP_C3HHeJ_P0035125 Npc2 protein_coding protein_coding MGP_C3HHeJ_T0034963.1 MGP_C3HHeJ_G0019644.1 mouse_genomes_project 12 81455237 81459112 - MGP_C3HHeJ_P0034963 protein_coding protein_coding MGP_C3HHeJ_T0006316.1 MGP_C3HHeJ_G0005257.1 mouse_genomes_project 12 6733508 6738967 - 1700022H16Rik lincRNA lincRNA MGP_C3HHeJ_T0009755.1 MGP_C3HHeJ_G0007888.1 mouse_genomes_project 12 111095037 111095107 + Mir127 miRNA miRNA MGP_C3HHeJ_T0035567.1 MGP_C3HHeJ_G0019835.1 mouse_genomes_project 12 106912031 106982631 - MGP_C3HHeJ_P0035567 Atg2b protein_coding protein_coding MGP_C3HHeJ_T0035568.1 MGP_C3HHeJ_G0019835.1 mouse_genomes_project 12 106912036 106982220 - MGP_C3HHeJ_P0035568 Atg2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0034526.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53622618 53722454 - MGP_C3HHeJ_P0034526 protein_coding protein_coding MGP_C3HHeJ_T0034527.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53623861 53624843 - protein_coding retained_intron MGP_C3HHeJ_T0034528.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53623993 53722368 - MGP_C3HHeJ_P0034528 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034529.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53654210 53661479 - MGP_C3HHeJ_P0034529 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034530.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53671481 53676000 - MGP_C3HHeJ_P0034530 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034531.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53686473 53751858 - MGP_C3HHeJ_P0034531 protein_coding protein_coding MGP_C3HHeJ_T0034532.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53710711 53722054 - MGP_C3HHeJ_P0034532 protein_coding protein_coding MGP_C3HHeJ_T0034533.1 MGP_C3HHeJ_G0019483.1 mouse_genomes_project 12 53710726 53735264 - MGP_C3HHeJ_P0034533 protein_coding protein_coding MGP_C3HHeJ_T0098872.1 MGP_C3HHeJ_G0037066.1 mouse_genomes_project 12 118749226 118749330 - Gm25112 snRNA snRNA MGP_C3HHeJ_T0011238.1 MGP_C3HHeJ_G0009371.1 mouse_genomes_project 12 86940169 86940254 + Gm27993 misc_RNA misc_RNA MGP_C3HHeJ_T0011233.1 MGP_C3HHeJ_G0009366.1 mouse_genomes_project 12 68721142 68721442 + Rn7s1 misc_RNA misc_RNA MGP_C3HHeJ_T0100115.1 MGP_C3HHeJ_G0038309.1 mouse_genomes_project 12 111162238 111162310 + DQ267102 snoRNA snoRNA MGP_C3HHeJ_T0009805.1 MGP_C3HHeJ_G0007938.1 mouse_genomes_project 12 111249838 111249918 + Mir412 miRNA miRNA MGP_C3HHeJ_T0009741.1 MGP_C3HHeJ_G0007874.1 mouse_genomes_project 12 110319953 110320049 + Mir345 miRNA miRNA MGP_C3HHeJ_T0034746.1 MGP_C3HHeJ_G0019561.1 mouse_genomes_project 12 70968163 70978410 + MGP_C3HHeJ_P0034746 Dact1 protein_coding protein_coding MGP_C3HHeJ_T0034747.1 MGP_C3HHeJ_G0019561.1 mouse_genomes_project 12 70968263 70977198 + MGP_C3HHeJ_P0034747 Dact1 protein_coding protein_coding MGP_C3HHeJ_T0035854.1 MGP_C3HHeJ_G0019924.1 mouse_genomes_project 12 118536391 118631950 + MGP_C3HHeJ_P0035854 Esyt2 protein_coding protein_coding MGP_C3HHeJ_T0100068.1 MGP_C3HHeJ_G0038262.1 mouse_genomes_project 12 28939103 28939236 + Gm25408 snoRNA snoRNA MGP_C3HHeJ_T0100114.1 MGP_C3HHeJ_G0038308.1 mouse_genomes_project 12 111160520 111160592 + Gm26922 snoRNA snoRNA MGP_C3HHeJ_T0006374.1 MGP_C3HHeJ_G0005306.1 mouse_genomes_project 12 106130305 106130947 - Gm28875 lincRNA lincRNA MGP_C3HHeJ_T0034465.1 MGP_C3HHeJ_G0019454.1 mouse_genomes_project 12 39263128 40243786 + MGP_C3HHeJ_P0034465 Immp2l protein_coding protein_coding MGP_C3HHeJ_T0034466.1 MGP_C3HHeJ_G0019454.1 mouse_genomes_project 12 39263164 39314085 + Immp2l protein_coding retained_intron MGP_C3HHeJ_T0034467.1 MGP_C3HHeJ_G0019454.1 mouse_genomes_project 12 39263165 39363310 + Immp2l protein_coding retained_intron MGP_C3HHeJ_T0034468.1 MGP_C3HHeJ_G0019454.1 mouse_genomes_project 12 39263367 40243440 + MGP_C3HHeJ_P0034468 Immp2l protein_coding protein_coding MGP_C3HHeJ_T0034469.1 MGP_C3HHeJ_G0019454.1 mouse_genomes_project 12 39313511 39363296 + MGP_C3HHeJ_P0034469 Immp2l protein_coding protein_coding MGP_C3HHeJ_T0000051.1 MGP_C3HHeJ_G0000041.1 mouse_genomes_project 12 115427667 115428153 - MGP_C3HHeJ_P0000051 Ighv5-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000052.1 MGP_C3HHeJ_G0000041.1 mouse_genomes_project 12 115427667 115428153 - MGP_C3HHeJ_P0000052 Ighv5-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035627.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110343795 110378004 - MGP_C3HHeJ_P0035627 Wars protein_coding protein_coding MGP_C3HHeJ_T0035628.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110343795 110378969 - MGP_C3HHeJ_P0035628 Wars protein_coding protein_coding MGP_C3HHeJ_T0035629.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110343795 110378932 - MGP_C3HHeJ_P0035629 Wars protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035630.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110343799 110378003 - MGP_C3HHeJ_P0035630 Wars protein_coding protein_coding MGP_C3HHeJ_T0035631.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110349850 110360031 - Wars protein_coding retained_intron MGP_C3HHeJ_T0035632.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110359863 110378896 - MGP_C3HHeJ_P0035632 Wars protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035633.1 MGP_C3HHeJ_G0019853.1 mouse_genomes_project 12 110365530 110373225 - Wars protein_coding retained_intron MGP_C3HHeJ_T0000092.1 MGP_C3HHeJ_G0000070.1 mouse_genomes_project 12 116216960 116217418 - MGP_C3HHeJ_P0000092 Ighv6-3 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034666.1 MGP_C3HHeJ_G0019532.1 mouse_genomes_project 12 68746943 68749557 + MGP_C3HHeJ_P0034666 Mgat2 protein_coding protein_coding MGP_C3HHeJ_T0009695.1 MGP_C3HHeJ_G0007828.1 mouse_genomes_project 12 13240162 13240270 - Mir6387 miRNA miRNA MGP_C3HHeJ_T0003338.1 MGP_C3HHeJ_G0003067.1 mouse_genomes_project 12 81573507 81578877 + Gm28370 antisense antisense MGP_C3HHeJ_T0034961.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81433848 81566419 - MGP_C3HHeJ_P0034961 Cox16 protein_coding protein_coding MGP_C3HHeJ_T0034962.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81433990 81566382 - MGP_C3HHeJ_P0034962 Cox16 protein_coding protein_coding MGP_C3HHeJ_T0034966.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81551553 81566429 - MGP_C3HHeJ_P0034966 Cox16 protein_coding protein_coding MGP_C3HHeJ_T0034967.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81552938 81566138 - Cox16 protein_coding processed_transcript MGP_C3HHeJ_T0034968.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81552938 81566422 - MGP_C3HHeJ_P0034968 Cox16 protein_coding protein_coding MGP_C3HHeJ_T0034969.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81552940 81566160 - Cox16 protein_coding processed_transcript MGP_C3HHeJ_T0034970.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81555079 81566436 - Cox16 protein_coding processed_transcript MGP_C3HHeJ_T0034971.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81555100 81566423 - MGP_C3HHeJ_P0034971 Cox16 protein_coding protein_coding MGP_C3HHeJ_T0034975.1 MGP_C3HHeJ_G0019643.1 mouse_genomes_project 12 81561295 81566394 - Cox16 protein_coding retained_intron MGP_C3HHeJ_T0034830.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75685079 75750063 + MGP_C3HHeJ_P0034830 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034831.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75685263 75988805 + MGP_C3HHeJ_P0034831 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034832.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75685263 75988784 + MGP_C3HHeJ_P0034832 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034833.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75685268 75761361 + Syne2 protein_coding retained_intron MGP_C3HHeJ_T0034834.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75685274 75780309 + MGP_C3HHeJ_P0034834 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034835.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75685295 75777335 + Syne2 protein_coding retained_intron MGP_C3HHeJ_T0034836.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75721038 75749885 + MGP_C3HHeJ_P0034836 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034837.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75780649 75785319 + Syne2 protein_coding retained_intron MGP_C3HHeJ_T0034838.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75898786 75904302 + MGP_C3HHeJ_P0034838 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034839.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75908098 75988799 + MGP_C3HHeJ_P0034839 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034840.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75925534 75988784 + MGP_C3HHeJ_P0034840 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034841.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75936629 75943472 + Syne2 protein_coding retained_intron MGP_C3HHeJ_T0034842.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75948967 75972324 + MGP_C3HHeJ_P0034842 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034843.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75959543 75972934 + MGP_C3HHeJ_P0034843 Syne2 protein_coding protein_coding MGP_C3HHeJ_T0034844.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75959826 75975869 + MGP_C3HHeJ_P0034844 Syne2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034845.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75965647 75988805 + MGP_C3HHeJ_P0034845 Syne2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034846.1 MGP_C3HHeJ_G0019594.1 mouse_genomes_project 12 75978784 75983876 + Syne2 protein_coding retained_intron MGP_C3HHeJ_T0006322.1 MGP_C3HHeJ_G0005263.1 mouse_genomes_project 12 24932439 24952700 - Gm9866 lincRNA lincRNA MGP_C3HHeJ_T0006323.1 MGP_C3HHeJ_G0005263.1 mouse_genomes_project 12 24932445 24953022 - Gm9866 lincRNA lincRNA MGP_C3HHeJ_T0006324.1 MGP_C3HHeJ_G0005263.1 mouse_genomes_project 12 24933529 24952835 - Gm9866 lincRNA lincRNA MGP_C3HHeJ_T0006325.1 MGP_C3HHeJ_G0005263.1 mouse_genomes_project 12 24937048 24952851 - Gm9866 lincRNA lincRNA MGP_C3HHeJ_T0012733.1 MGP_C3HHeJ_G0010837.1 mouse_genomes_project 12 120130550 120130895 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034069.1 MGP_C3HHeJ_G0019308.1 mouse_genomes_project 12 735209 735606 + MGP_C3HHeJ_P0034069 Gm17728 protein_coding protein_coding MGP_C3HHeJ_T0034181.1 MGP_C3HHeJ_G0019355.1 mouse_genomes_project 12 11528535 11532975 - MGP_C3HHeJ_P0034181 Fam84a protein_coding protein_coding MGP_C3HHeJ_T0009731.1 MGP_C3HHeJ_G0007864.1 mouse_genomes_project 12 100803647 100803725 - Gm23291 miRNA miRNA MGP_C3HHeJ_T0034284.1 MGP_C3HHeJ_G0019389.1 mouse_genomes_project 12 26392343 26414430 - MGP_C3HHeJ_P0034284 Allc protein_coding unknown_likely_coding MGP_C3HHeJ_T0035158.1 MGP_C3HHeJ_G0019696.1 mouse_genomes_project 12 85344610 85362249 - MGP_C3HHeJ_P0035158 Rps6kl1 protein_coding protein_coding MGP_C3HHeJ_T0012727.1 MGP_C3HHeJ_G0010831.1 mouse_genomes_project 12 115728789 115729224 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006360.1 MGP_C3HHeJ_G0005292.1 mouse_genomes_project 12 86440155 86469040 + Gm805 lincRNA lincRNA MGP_C3HHeJ_T0006390.1 MGP_C3HHeJ_G0005318.1 mouse_genomes_project 12 109156001 109167433 - 4930465M20Rik lincRNA lincRNA MGP_C3HHeJ_T0006391.1 MGP_C3HHeJ_G0005318.1 mouse_genomes_project 12 109161602 109167441 - 4930465M20Rik lincRNA lincRNA MGP_C3HHeJ_T0034449.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38413209 38436731 - MGP_C3HHeJ_P0034449 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0034450.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38414773 38419385 - MGP_C3HHeJ_P0034450 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0034451.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38414962 38416285 - Ifrd1 protein_coding retained_intron MGP_C3HHeJ_T0034452.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38415561 38436504 - MGP_C3HHeJ_P0034452 Ifrd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034453.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38427511 38461471 - MGP_C3HHeJ_P0034453 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0034454.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38427568 38431045 - MGP_C3HHeJ_P0034454 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0034455.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38427625 38461878 - MGP_C3HHeJ_P0034455 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0034456.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38428893 38436727 - Ifrd1 protein_coding retained_intron MGP_C3HHeJ_T0034457.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38429720 38461896 - MGP_C3HHeJ_P0034457 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0034458.1 MGP_C3HHeJ_G0019450.1 mouse_genomes_project 12 38430689 38436691 - MGP_C3HHeJ_P0034458 Ifrd1 protein_coding protein_coding MGP_C3HHeJ_T0035237.1 MGP_C3HHeJ_G0019718.1 mouse_genomes_project 12 87305887 87311182 - MGP_C3HHeJ_P0035237 Zdhhc22 protein_coding protein_coding MGP_C3HHeJ_T0035715.1 MGP_C3HHeJ_G0019877.1 mouse_genomes_project 12 113130424 113131637 - MGP_C3HHeJ_P0035715 Gm266 protein_coding protein_coding MGP_C3HHeJ_T0035318.1 MGP_C3HHeJ_G0019741.1 mouse_genomes_project 12 92057242 92176491 + MGP_C3HHeJ_P0035318 Tshr protein_coding protein_coding MGP_C3HHeJ_T0035319.1 MGP_C3HHeJ_G0019741.1 mouse_genomes_project 12 92057248 92158504 + MGP_C3HHeJ_P0035319 Tshr protein_coding protein_coding MGP_C3HHeJ_T0035320.1 MGP_C3HHeJ_G0019741.1 mouse_genomes_project 12 92174047 92175538 + MGP_C3HHeJ_P0035320 Tshr protein_coding protein_coding MGP_C3HHeJ_T0012683.1 MGP_C3HHeJ_G0010787.1 mouse_genomes_project 12 58283666 58284641 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035288.1 MGP_C3HHeJ_G0019737.1 mouse_genomes_project 12 88926858 89038308 + MGP_C3HHeJ_P0035288 Adck1 protein_coding protein_coding MGP_C3HHeJ_T0035289.1 MGP_C3HHeJ_G0019737.1 mouse_genomes_project 12 88927105 89038307 + MGP_C3HHeJ_P0035289 Adck1 protein_coding protein_coding MGP_C3HHeJ_T0035555.1 MGP_C3HHeJ_G0019830.1 mouse_genomes_project 12 106466291 106472747 + MGP_C3HHeJ_P0035555 Tcl1b3 protein_coding protein_coding MGP_C3HHeJ_T0035500.1 MGP_C3HHeJ_G0019795.1 mouse_genomes_project 12 104424879 104426393 - MGP_C3HHeJ_P0035500 Ifi27l2a protein_coding protein_coding MGP_C3HHeJ_T0034594.1 MGP_C3HHeJ_G0019510.1 mouse_genomes_project 12 57975124 57991226 + MGP_C3HHeJ_P0034594 Gemin2 protein_coding protein_coding MGP_C3HHeJ_T0034595.1 MGP_C3HHeJ_G0019510.1 mouse_genomes_project 12 57975185 57991155 + Gemin2 protein_coding retained_intron MGP_C3HHeJ_T0034596.1 MGP_C3HHeJ_G0019510.1 mouse_genomes_project 12 57987425 57990643 + Gemin2 protein_coding retained_intron MGP_C3HHeJ_T0035391.1 MGP_C3HHeJ_G0019761.1 mouse_genomes_project 12 101133448 101254318 - MGP_C3HHeJ_P0035391 Ttc7b protein_coding unknown_likely_coding MGP_C3HHeJ_T0035392.1 MGP_C3HHeJ_G0019761.1 mouse_genomes_project 12 101133451 101356723 - MGP_C3HHeJ_P0035392 Ttc7b protein_coding protein_coding MGP_C3HHeJ_T0012730.1 MGP_C3HHeJ_G0010834.1 mouse_genomes_project 12 117681098 117682090 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034559.1 MGP_C3HHeJ_G0019497.1 mouse_genomes_project 12 54661284 54694613 + MGP_C3HHeJ_P0034559 Brms1l protein_coding protein_coding MGP_C3HHeJ_T0034557.1 MGP_C3HHeJ_G0019496.1 mouse_genomes_project 12 54425491 54646113 - MGP_C3HHeJ_P0034557 Ralgapa1 protein_coding protein_coding MGP_C3HHeJ_T0034558.1 MGP_C3HHeJ_G0019496.1 mouse_genomes_project 12 54434658 54645713 - MGP_C3HHeJ_P0034558 Ralgapa1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035118.1 MGP_C3HHeJ_G0019683.1 mouse_genomes_project 12 84749199 84775775 + MGP_C3HHeJ_P0035118 Vsx2 protein_coding protein_coding MGP_C3HHeJ_T0035119.1 MGP_C3HHeJ_G0019683.1 mouse_genomes_project 12 84749277 84775775 + MGP_C3HHeJ_P0035119 Vsx2 protein_coding protein_coding MGP_C3HHeJ_T0035607.1 MGP_C3HHeJ_G0019846.1 mouse_genomes_project 12 109786867 109822474 + MGP_C3HHeJ_P0035607 Cyp46a1 protein_coding protein_coding MGP_C3HHeJ_T0034681.1 MGP_C3HHeJ_G0019541.1 mouse_genomes_project 12 69151771 69158064 - MGP_C3HHeJ_P0034681 protein_coding protein_coding MGP_C3HHeJ_T0035650.1 MGP_C3HHeJ_G0019858.1 mouse_genomes_project 12 111819609 111821639 + MGP_C3HHeJ_P0035650 protein_coding protein_coding MGP_C3HHeJ_T0035651.1 MGP_C3HHeJ_G0019858.1 mouse_genomes_project 12 111819801 111821250 + MGP_C3HHeJ_P0035651 protein_coding protein_coding MGP_C3HHeJ_T0035393.1 MGP_C3HHeJ_G0019762.1 mouse_genomes_project 12 101387803 101569420 - MGP_C3HHeJ_P0035393 Rps6ka5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035394.1 MGP_C3HHeJ_G0019762.1 mouse_genomes_project 12 101389146 101569568 - MGP_C3HHeJ_P0035394 Rps6ka5 protein_coding protein_coding MGP_C3HHeJ_T0009708.1 MGP_C3HHeJ_G0007841.1 mouse_genomes_project 12 54646008 54646099 - Gm23394 miRNA miRNA MGP_C3HHeJ_T0034808.1 MGP_C3HHeJ_G0019582.1 mouse_genomes_project 12 73337292 73541177 + MGP_C3HHeJ_P0034808 Prkch protein_coding protein_coding MGP_C3HHeJ_T0034809.1 MGP_C3HHeJ_G0019582.1 mouse_genomes_project 12 73337338 73524698 + MGP_C3HHeJ_P0034809 Prkch protein_coding protein_coding MGP_C3HHeJ_T0034051.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 594598 630877 + Dnmt3a protein_coding retained_intron MGP_C3HHeJ_T0034052.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 595089 659682 + Dnmt3a protein_coding retained_intron MGP_C3HHeJ_T0034053.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 595118 667042 + MGP_C3HHeJ_P0034053 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034054.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 595621 714471 + MGP_C3HHeJ_P0034054 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034055.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 595649 691988 + MGP_C3HHeJ_P0034055 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034056.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 597185 713519 + MGP_C3HHeJ_P0034056 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034057.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 641151 707919 + MGP_C3HHeJ_P0034057 Dnmt3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034058.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 653289 658425 + MGP_C3HHeJ_P0034058 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034059.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 658453 669740 + MGP_C3HHeJ_P0034059 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034060.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 679129 691114 + MGP_C3HHeJ_P0034060 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034061.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 686729 707874 + MGP_C3HHeJ_P0034061 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034062.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 686736 714471 + MGP_C3HHeJ_P0034062 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034063.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 689816 690669 + MGP_C3HHeJ_P0034063 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034064.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 689861 691969 + MGP_C3HHeJ_P0034064 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034065.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 690585 692358 + MGP_C3HHeJ_P0034065 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034066.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 692412 695413 + Dnmt3a protein_coding retained_intron MGP_C3HHeJ_T0034067.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 696008 706825 + MGP_C3HHeJ_P0034067 Dnmt3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034068.1 MGP_C3HHeJ_G0019307.1 mouse_genomes_project 12 706848 708579 + MGP_C3HHeJ_P0034068 Dnmt3a protein_coding protein_coding MGP_C3HHeJ_T0034863.1 MGP_C3HHeJ_G0019601.1 mouse_genomes_project 12 76297169 76299928 + MGP_C3HHeJ_P0034863 Hspa2 protein_coding protein_coding MGP_C3HHeJ_T0035120.1 MGP_C3HHeJ_G0019684.1 mouse_genomes_project 12 84782684 84798324 - MGP_C3HHeJ_P0035120 Abcd4 protein_coding protein_coding MGP_C3HHeJ_T0035121.1 MGP_C3HHeJ_G0019685.1 mouse_genomes_project 12 84823990 84835666 + MGP_C3HHeJ_P0035121 Vrtn protein_coding protein_coding MGP_C3HHeJ_T0035122.1 MGP_C3HHeJ_G0019685.1 mouse_genomes_project 12 84825526 84835666 + MGP_C3HHeJ_P0035122 Vrtn protein_coding protein_coding MGP_C3HHeJ_T0035123.1 MGP_C3HHeJ_G0019685.1 mouse_genomes_project 12 84825867 84835666 + MGP_C3HHeJ_P0035123 Vrtn protein_coding protein_coding MGP_C3HHeJ_T0098850.1 MGP_C3HHeJ_G0037044.1 mouse_genomes_project 12 59824811 59824918 + Gm23059 snRNA snRNA MGP_C3HHeJ_T0000236.1 MGP_C3HHeJ_G0000186.1 mouse_genomes_project 12 116310468 116310929 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034072.1 MGP_C3HHeJ_G0019311.1 mouse_genomes_project 12 892326 924944 + MGP_C3HHeJ_P0034072 Dnajc27 protein_coding protein_coding MGP_C3HHeJ_T0034073.1 MGP_C3HHeJ_G0019311.1 mouse_genomes_project 12 892381 923536 + MGP_C3HHeJ_P0034073 Dnajc27 protein_coding protein_coding MGP_C3HHeJ_T0017083.1 MGP_C3HHeJ_G0014995.1 mouse_genomes_project 12 92320996 92332260 - Gm8378 processed_transcript processed_transcript MGP_C3HHeJ_T0017084.1 MGP_C3HHeJ_G0014995.1 mouse_genomes_project 12 92328769 92332305 - Gm8378 processed_transcript processed_transcript MGP_C3HHeJ_T0017085.1 MGP_C3HHeJ_G0014995.1 mouse_genomes_project 12 92330657 92332305 - Gm8378 processed_transcript processed_transcript MGP_C3HHeJ_T0035358.1 MGP_C3HHeJ_G0019753.1 mouse_genomes_project 12 99713176 99778078 + MGP_C3HHeJ_P0035358 Ttc8 protein_coding protein_coding MGP_C3HHeJ_T0035359.1 MGP_C3HHeJ_G0019753.1 mouse_genomes_project 12 99713214 99778084 + MGP_C3HHeJ_P0035359 Ttc8 protein_coding protein_coding MGP_C3HHeJ_T0035360.1 MGP_C3HHeJ_G0019753.1 mouse_genomes_project 12 99713422 99754442 + MGP_C3HHeJ_P0035360 Ttc8 protein_coding protein_coding MGP_C3HHeJ_T0035361.1 MGP_C3HHeJ_G0019753.1 mouse_genomes_project 12 99729649 99765762 + Ttc8 protein_coding processed_transcript MGP_C3HHeJ_T0035362.1 MGP_C3HHeJ_G0019753.1 mouse_genomes_project 12 99769336 99777408 + Ttc8 protein_coding processed_transcript MGP_C3HHeJ_T0035363.1 MGP_C3HHeJ_G0019753.1 mouse_genomes_project 12 99769365 99774753 + Ttc8 protein_coding processed_transcript MGP_C3HHeJ_T0034090.1 MGP_C3HHeJ_G0019316.1 mouse_genomes_project 12 1441045 1441147 - MGP_C3HHeJ_P0034090 Gm3625 protein_coding protein_coding MGP_C3HHeJ_T0100125.1 MGP_C3HHeJ_G0038319.1 mouse_genomes_project 12 111193522 111193594 + Gm25854 snoRNA snoRNA MGP_C3HHeJ_T0003326.1 MGP_C3HHeJ_G0003057.1 mouse_genomes_project 12 55548896 55551951 - Gm15524 antisense antisense MGP_C3HHeJ_T0035431.1 MGP_C3HHeJ_G0019773.1 mouse_genomes_project 12 103049559 103199549 + MGP_C3HHeJ_P0035431 Slc24a4 protein_coding protein_coding MGP_C3HHeJ_T0035432.1 MGP_C3HHeJ_G0019773.1 mouse_genomes_project 12 103050000 103199207 + MGP_C3HHeJ_P0035432 Slc24a4 protein_coding protein_coding MGP_C3HHeJ_T0035433.1 MGP_C3HHeJ_G0019773.1 mouse_genomes_project 12 103050216 103198955 + MGP_C3HHeJ_P0035433 Slc24a4 protein_coding protein_coding MGP_C3HHeJ_T0100076.1 MGP_C3HHeJ_G0038270.1 mouse_genomes_project 12 42067026 42067155 + Gm26326 snoRNA snoRNA MGP_C3HHeJ_T0009719.1 MGP_C3HHeJ_G0007852.1 mouse_genomes_project 12 77051782 77051850 - Gm22696 miRNA miRNA MGP_C3HHeJ_T0000129.1 MGP_C3HHeJ_G0000099.1 mouse_genomes_project 12 118236935 118237228 - MGP_C3HHeJ_P0000129 IG_V_gene IG_V_gene MGP_C3HHeJ_T0101681.1 MGP_C3HHeJ_G0039646.1 mouse_genomes_project 12 104885464 105014170 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0035067.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84274724 84300942 + Dnal1 protein_coding processed_transcript MGP_C3HHeJ_T0035068.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84274724 84305658 + MGP_C3HHeJ_P0035068 Dnal1 protein_coding protein_coding MGP_C3HHeJ_T0035069.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84274729 84299561 + MGP_C3HHeJ_P0035069 Dnal1 protein_coding protein_coding MGP_C3HHeJ_T0035070.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84274748 84302939 + MGP_C3HHeJ_P0035070 Dnal1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035071.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84274749 84295147 + MGP_C3HHeJ_P0035071 Dnal1 protein_coding protein_coding MGP_C3HHeJ_T0035072.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84288086 84309639 + Dnal1 protein_coding retained_intron MGP_C3HHeJ_T0035073.1 MGP_C3HHeJ_G0019671.1 mouse_genomes_project 12 84296733 84298173 + MGP_C3HHeJ_P0035073 Dnal1 protein_coding protein_coding MGP_C3HHeJ_T0035060.1 MGP_C3HHeJ_G0019666.1 mouse_genomes_project 12 84144111 84158823 + MGP_C3HHeJ_P0035060 Acot1 protein_coding protein_coding MGP_C3HHeJ_T0000022.1 MGP_C3HHeJ_G0000016.1 mouse_genomes_project 12 115090437 115092604 + IG_C_pseudogene IG_C_pseudogene MGP_C3HHeJ_T0000071.1 MGP_C3HHeJ_G0000057.1 mouse_genomes_project 12 115916561 115916991 - MGP_C3HHeJ_P0000071 Ighv14-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035863.1 MGP_C3HHeJ_G0019928.1 mouse_genomes_project 12 120141604 120177669 + MGP_C3HHeJ_P0035863 Cdca7l protein_coding protein_coding MGP_C3HHeJ_T0035864.1 MGP_C3HHeJ_G0019928.1 mouse_genomes_project 12 120141973 120172722 + MGP_C3HHeJ_P0035864 Cdca7l protein_coding protein_coding MGP_C3HHeJ_T0035865.1 MGP_C3HHeJ_G0019928.1 mouse_genomes_project 12 120141977 120174594 + MGP_C3HHeJ_P0035865 Cdca7l protein_coding protein_coding MGP_C3HHeJ_T0100121.1 MGP_C3HHeJ_G0038315.1 mouse_genomes_project 12 111186767 111186842 + AF357341 snoRNA snoRNA MGP_C3HHeJ_T0098857.1 MGP_C3HHeJ_G0037051.1 mouse_genomes_project 12 69603815 69603918 - Gm23579 snRNA snRNA MGP_C3HHeJ_T0035124.1 MGP_C3HHeJ_G0019686.1 mouse_genomes_project 12 84869558 84893104 - MGP_C3HHeJ_P0035124 Syndig1l protein_coding protein_coding MGP_C3HHeJ_T0035135.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85122240 85176199 - MGP_C3HHeJ_P0035135 Arel1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035136.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85122242 85176275 - MGP_C3HHeJ_P0035136 Arel1 protein_coding protein_coding MGP_C3HHeJ_T0035137.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85139762 85148765 - MGP_C3HHeJ_P0035137 Arel1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035138.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85145763 85152310 - MGP_C3HHeJ_P0035138 Arel1 protein_coding protein_coding MGP_C3HHeJ_T0035139.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85147363 85150785 - MGP_C3HHeJ_P0035139 Arel1 protein_coding protein_coding MGP_C3HHeJ_T0035140.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85147384 85176231 - MGP_C3HHeJ_P0035140 Arel1 protein_coding protein_coding MGP_C3HHeJ_T0035141.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85147393 85176213 - MGP_C3HHeJ_P0035141 Arel1 protein_coding protein_coding MGP_C3HHeJ_T0035142.1 MGP_C3HHeJ_G0019691.1 mouse_genomes_project 12 85156468 85171407 - Arel1 protein_coding processed_transcript MGP_C3HHeJ_T0101674.1 MGP_C3HHeJ_G0039640.1 mouse_genomes_project 12 75486413 75493990 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101675.1 MGP_C3HHeJ_G0039640.1 mouse_genomes_project 12 75487072 75494013 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0034761.1 MGP_C3HHeJ_G0019567.1 mouse_genomes_project 12 71890708 71914638 - Rtn1 protein_coding processed_transcript MGP_C3HHeJ_T0034762.1 MGP_C3HHeJ_G0019567.1 mouse_genomes_project 12 71890708 72090269 - MGP_C3HHeJ_P0034762 Rtn1 protein_coding protein_coding MGP_C3HHeJ_T0034763.1 MGP_C3HHeJ_G0019567.1 mouse_genomes_project 12 71890709 71915623 - MGP_C3HHeJ_P0034763 Rtn1 protein_coding protein_coding MGP_C3HHeJ_T0034764.1 MGP_C3HHeJ_G0019567.1 mouse_genomes_project 12 71891245 71915623 - MGP_C3HHeJ_P0034764 Rtn1 protein_coding protein_coding MGP_C3HHeJ_T0034765.1 MGP_C3HHeJ_G0019567.1 mouse_genomes_project 12 71902189 71915585 - Rtn1 protein_coding processed_transcript MGP_C3HHeJ_T0012732.1 MGP_C3HHeJ_G0010836.1 mouse_genomes_project 12 118856578 118856871 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000253.1 MGP_C3HHeJ_G0000203.1 mouse_genomes_project 12 118047246 118047540 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000831.1 MGP_C3HHeJ_G0000772.1 mouse_genomes_project 12 83028024 83029335 - TEC TEC MGP_C3HHeJ_T0035418.1 MGP_C3HHeJ_G0019769.1 mouse_genomes_project 12 102650590 102724535 - MGP_C3HHeJ_P0035418 Fbln5 protein_coding protein_coding MGP_C3HHeJ_T0012693.1 MGP_C3HHeJ_G0010797.1 mouse_genomes_project 12 79137728 79138156 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100062.1 MGP_C3HHeJ_G0038256.1 mouse_genomes_project 12 14407539 14407661 + Gm22303 snoRNA snoRNA MGP_C3HHeJ_T0034597.1 MGP_C3HHeJ_G0019511.1 mouse_genomes_project 12 58002908 58022356 - MGP_C3HHeJ_P0034597 Trappc6b protein_coding protein_coding MGP_C3HHeJ_T0034598.1 MGP_C3HHeJ_G0019511.1 mouse_genomes_project 12 58003460 58022131 - MGP_C3HHeJ_P0034598 Trappc6b protein_coding unknown_likely_coding MGP_C3HHeJ_T0100112.1 MGP_C3HHeJ_G0038306.1 mouse_genomes_project 12 111157318 111157391 + DQ267101 snoRNA snoRNA MGP_C3HHeJ_T0035387.1 MGP_C3HHeJ_G0019760.1 mouse_genomes_project 12 101031167 101041538 + MGP_C3HHeJ_P0035387 Calm1 protein_coding protein_coding MGP_C3HHeJ_T0035388.1 MGP_C3HHeJ_G0019760.1 mouse_genomes_project 12 101031261 101035670 + Calm1 protein_coding retained_intron MGP_C3HHeJ_T0035389.1 MGP_C3HHeJ_G0019760.1 mouse_genomes_project 12 101031876 101041538 + MGP_C3HHeJ_P0035389 Calm1 protein_coding protein_coding MGP_C3HHeJ_T0035390.1 MGP_C3HHeJ_G0019760.1 mouse_genomes_project 12 101037135 101038228 + Calm1 protein_coding retained_intron MGP_C3HHeJ_T0034117.1 MGP_C3HHeJ_G0019328.1 mouse_genomes_project 12 1948588 2260646 - MGP_C3HHeJ_P0034117 Klhl29 protein_coding protein_coding MGP_C3HHeJ_T0009757.1 MGP_C3HHeJ_G0007890.1 mouse_genomes_project 12 111096883 111096958 + Mir432 miRNA miRNA MGP_C3HHeJ_T0100059.1 MGP_C3HHeJ_G0038253.1 mouse_genomes_project 12 6798254 6798382 - Gm23979 snoRNA snoRNA MGP_C3HHeJ_T0098005.1 MGP_C3HHeJ_G0036217.1 mouse_genomes_project 12 2743110 2743225 + Gm23752 rRNA rRNA MGP_C3HHeJ_T0034313.1 MGP_C3HHeJ_G0019400.1 mouse_genomes_project 12 28462237 28468987 + MGP_C3HHeJ_P0034313 Tmem18 protein_coding protein_coding MGP_C3HHeJ_T0009698.1 MGP_C3HHeJ_G0007831.1 mouse_genomes_project 12 26524573 26524638 + Mir6937 miRNA miRNA MGP_C3HHeJ_T0100099.1 MGP_C3HHeJ_G0038293.1 mouse_genomes_project 12 91485068 91485197 + Gm23195 snoRNA snoRNA MGP_C3HHeJ_T0034367.1 MGP_C3HHeJ_G0019419.1 mouse_genomes_project 12 30764661 30797070 + MGP_C3HHeJ_P0034367 Nampt protein_coding protein_coding MGP_C3HHeJ_T0003356.1 MGP_C3HHeJ_G0003083.1 mouse_genomes_project 12 112228229 112228742 - Gm17111 antisense antisense MGP_C3HHeJ_T0035134.1 MGP_C3HHeJ_G0019690.1 mouse_genomes_project 12 85076428 85078792 + MGP_C3HHeJ_P0035134 D030025P21Rik protein_coding protein_coding MGP_C3HHeJ_T0006384.1 MGP_C3HHeJ_G0005312.1 mouse_genomes_project 12 108222724 108265355 + 1700013N06Rik lincRNA lincRNA MGP_C3HHeJ_T0009730.1 MGP_C3HHeJ_G0007863.1 mouse_genomes_project 12 92440508 92440577 - Gm22015 miRNA miRNA MGP_C3HHeJ_T0098010.1 MGP_C3HHeJ_G0036222.1 mouse_genomes_project 12 26889840 26889955 - Gm23342 rRNA rRNA MGP_C3HHeJ_T0034397.1 MGP_C3HHeJ_G0019429.1 mouse_genomes_project 12 32892060 32893116 - MGP_C3HHeJ_P0034397 4921508M14Rik protein_coding protein_coding MGP_C3HHeJ_T0006425.1 MGP_C3HHeJ_G0005331.1 mouse_genomes_project 12 113227210 113229301 - 2810029C07Rik lincRNA lincRNA MGP_C3HHeJ_T0006388.1 MGP_C3HHeJ_G0005316.1 mouse_genomes_project 12 108551847 108565009 - Gm16084 lincRNA lincRNA MGP_C3HHeJ_T0035553.1 MGP_C3HHeJ_G0019829.1 mouse_genomes_project 12 106432480 106437522 + MGP_C3HHeJ_P0035553 Tcl1b5 protein_coding protein_coding MGP_C3HHeJ_T0034228.1 MGP_C3HHeJ_G0019369.1 mouse_genomes_project 12 18733077 18838883 + MGP_C3HHeJ_P0034228 Asap2 protein_coding protein_coding MGP_C3HHeJ_T0034229.1 MGP_C3HHeJ_G0019369.1 mouse_genomes_project 12 18733077 18838883 + MGP_C3HHeJ_P0034229 Asap2 protein_coding protein_coding MGP_C3HHeJ_T0034230.1 MGP_C3HHeJ_G0019369.1 mouse_genomes_project 12 18733077 18838883 + MGP_C3HHeJ_P0034230 Asap2 protein_coding protein_coding MGP_C3HHeJ_T0034231.1 MGP_C3HHeJ_G0019369.1 mouse_genomes_project 12 18733077 18836923 + MGP_C3HHeJ_P0034231 Asap2 protein_coding protein_coding MGP_C3HHeJ_T0035704.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113086914 113099445 + MGP_C3HHeJ_P0035704 Tnfaip2 protein_coding protein_coding MGP_C3HHeJ_T0035705.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113087103 113099105 + MGP_C3HHeJ_P0035705 Tnfaip2 protein_coding protein_coding MGP_C3HHeJ_T0035706.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113087107 113099105 + Tnfaip2 protein_coding retained_intron MGP_C3HHeJ_T0035707.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113087107 113093033 + MGP_C3HHeJ_P0035707 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035708.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113088769 113089957 + MGP_C3HHeJ_P0035708 Tnfaip2 protein_coding protein_coding MGP_C3HHeJ_T0035709.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113089443 113098252 + MGP_C3HHeJ_P0035709 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035710.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113090529 113098252 + MGP_C3HHeJ_P0035710 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035711.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113092580 113093757 + Tnfaip2 protein_coding retained_intron MGP_C3HHeJ_T0035712.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113093956 113095908 + Tnfaip2 protein_coding retained_intron MGP_C3HHeJ_T0035713.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113094311 113098186 + MGP_C3HHeJ_P0035713 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035714.1 MGP_C3HHeJ_G0019876.1 mouse_genomes_project 12 113094957 113098053 + Tnfaip2 protein_coding retained_intron MGP_C3HHeJ_T0000244.1 MGP_C3HHeJ_G0000194.1 mouse_genomes_project 12 116507806 116508291 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0100084.1 MGP_C3HHeJ_G0038278.1 mouse_genomes_project 12 58666456 58666587 - Gm24377 snoRNA snoRNA MGP_C3HHeJ_T0000088.1 MGP_C3HHeJ_G0000067.1 mouse_genomes_project 12 116149875 116150350 - MGP_C3HHeJ_P0000088 Ighv3-8 IG_V_gene IG_V_gene MGP_C3HHeJ_T0098864.1 MGP_C3HHeJ_G0037058.1 mouse_genomes_project 12 80666115 80666219 - Gm23817 snRNA snRNA MGP_C3HHeJ_T0000027.1 MGP_C3HHeJ_G0000021.1 mouse_genomes_project 12 115345297 115345320 - MGP_C3HHeJ_P0000027 Gm16968 IG_D_gene IG_D_gene MGP_C3HHeJ_T0017092.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111106453 111109981 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017093.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111106458 111149629 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017094.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111106541 111131576 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017095.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111123952 111138505 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017096.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111123952 111150574 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017097.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111128767 111149695 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017098.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111137077 111140517 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017099.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111138231 111147693 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017100.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111138475 111150497 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017101.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111148170 111149676 + Rian processed_transcript TEC MGP_C3HHeJ_T0017102.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111150395 111160903 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017103.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111152534 111165701 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017104.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111155063 111156243 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017105.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111155960 111161763 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017106.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111156572 111166905 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017107.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111156576 111161784 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017108.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111156906 111165647 + Rian processed_transcript lincRNA MGP_C3HHeJ_T0017109.1 MGP_C3HHeJ_G0015001.1 mouse_genomes_project 12 111163181 111165024 + Rian processed_transcript TEC MGP_C3HHeJ_T0012703.1 MGP_C3HHeJ_G0010807.1 mouse_genomes_project 12 88541711 88542209 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035323.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92283535 92435310 - MGP_C3HHeJ_P0035323 protein_coding protein_coding MGP_C3HHeJ_T0035324.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92286342 92392822 - MGP_C3HHeJ_P0035324 protein_coding protein_coding MGP_C3HHeJ_T0035325.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92349586 92360825 - protein_coding processed_transcript MGP_C3HHeJ_T0035326.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92360932 92428002 - MGP_C3HHeJ_P0035326 protein_coding protein_coding MGP_C3HHeJ_T0035327.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92384007 92420059 - protein_coding processed_transcript MGP_C3HHeJ_T0035328.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92392584 92395054 - MGP_C3HHeJ_P0035328 protein_coding protein_coding MGP_C3HHeJ_T0035329.1 MGP_C3HHeJ_G0019743.1 mouse_genomes_project 12 92434674 92437261 - protein_coding processed_transcript MGP_C3HHeJ_T0012695.1 MGP_C3HHeJ_G0010799.1 mouse_genomes_project 12 80125084 80125979 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035212.1 MGP_C3HHeJ_G0019712.1 mouse_genomes_project 12 86515952 86566305 + MGP_C3HHeJ_P0035212 Gpatch2l protein_coding protein_coding MGP_C3HHeJ_T0034933.1 MGP_C3HHeJ_G0019635.1 mouse_genomes_project 12 80739788 80771617 + MGP_C3HHeJ_P0034933 Plekhd1 protein_coding protein_coding MGP_C3HHeJ_T0034934.1 MGP_C3HHeJ_G0019635.1 mouse_genomes_project 12 80753997 80768088 + Plekhd1 protein_coding processed_transcript MGP_C3HHeJ_T0034935.1 MGP_C3HHeJ_G0019635.1 mouse_genomes_project 12 80768160 80769410 + MGP_C3HHeJ_P0034935 Plekhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034936.1 MGP_C3HHeJ_G0019635.1 mouse_genomes_project 12 80769134 80770313 + Plekhd1 protein_coding retained_intron MGP_C3HHeJ_T0009759.1 MGP_C3HHeJ_G0007892.1 mouse_genomes_project 12 111097982 111098044 + Mir136 miRNA miRNA MGP_C3HHeJ_T0035167.1 MGP_C3HHeJ_G0019699.1 mouse_genomes_project 12 85452472 85490029 - MGP_C3HHeJ_P0035167 Mlh3 protein_coding protein_coding MGP_C3HHeJ_T0035168.1 MGP_C3HHeJ_G0019699.1 mouse_genomes_project 12 85452472 85490002 - MGP_C3HHeJ_P0035168 Mlh3 protein_coding protein_coding MGP_C3HHeJ_T0035364.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 99984392 100193225 - MGP_C3HHeJ_P0035364 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035365.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 99984500 100192500 - MGP_C3HHeJ_P0035365 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035366.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 99984500 100248576 - MGP_C3HHeJ_P0035366 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035367.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 99986193 100080539 - MGP_C3HHeJ_P0035367 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035368.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 99998923 100080538 - MGP_C3HHeJ_P0035368 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035369.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 100080524 100151989 - Foxn3 protein_coding processed_transcript MGP_C3HHeJ_T0035370.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 100134344 100210479 - MGP_C3HHeJ_P0035370 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035371.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 100186390 100248599 - Foxn3 protein_coding retained_intron MGP_C3HHeJ_T0035372.1 MGP_C3HHeJ_G0019754.1 mouse_genomes_project 12 100187424 100248613 - MGP_C3HHeJ_P0035372 Foxn3 protein_coding protein_coding MGP_C3HHeJ_T0035549.1 MGP_C3HHeJ_G0019825.1 mouse_genomes_project 12 106136969 106185411 - MGP_C3HHeJ_P0035549 Syne3 protein_coding protein_coding MGP_C3HHeJ_T0035502.1 MGP_C3HHeJ_G0019797.1 mouse_genomes_project 12 104521394 104619170 + MGP_C3HHeJ_P0035502 Ppp4r4 protein_coding protein_coding MGP_C3HHeJ_T0035503.1 MGP_C3HHeJ_G0019797.1 mouse_genomes_project 12 104521663 104618243 + MGP_C3HHeJ_P0035503 Ppp4r4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035504.1 MGP_C3HHeJ_G0019797.1 mouse_genomes_project 12 104548199 104618405 + MGP_C3HHeJ_P0035504 Ppp4r4 protein_coding protein_coding MGP_C3HHeJ_T0035505.1 MGP_C3HHeJ_G0019797.1 mouse_genomes_project 12 104571170 104581372 + MGP_C3HHeJ_P0035505 Ppp4r4 protein_coding protein_coding MGP_C3HHeJ_T0035506.1 MGP_C3HHeJ_G0019797.1 mouse_genomes_project 12 104592481 104597228 + MGP_C3HHeJ_P0035506 Ppp4r4 protein_coding protein_coding MGP_C3HHeJ_T0006371.1 MGP_C3HHeJ_G0005303.1 mouse_genomes_project 12 101801014 101809166 + A630072L19Rik lincRNA lincRNA MGP_C3HHeJ_T0098832.1 MGP_C3HHeJ_G0037026.1 mouse_genomes_project 12 10001606 10001713 + Gm25538 snRNA snRNA MGP_C3HHeJ_T0034638.1 MGP_C3HHeJ_G0019522.1 mouse_genomes_project 12 64454944 64486885 + MGP_C3HHeJ_P0034638 Prpf39 protein_coding protein_coding MGP_C3HHeJ_T0034639.1 MGP_C3HHeJ_G0019522.1 mouse_genomes_project 12 64454977 64486885 + MGP_C3HHeJ_P0034639 Prpf39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034640.1 MGP_C3HHeJ_G0019522.1 mouse_genomes_project 12 64462403 64480092 + MGP_C3HHeJ_P0034640 Prpf39 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012734.1 MGP_C3HHeJ_G0010838.1 mouse_genomes_project 12 122377633 122378075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100070.1 MGP_C3HHeJ_G0038264.1 mouse_genomes_project 12 31421377 31421509 - Gm23529 snoRNA snoRNA MGP_C3HHeJ_T0034853.1 MGP_C3HHeJ_G0019598.1 mouse_genomes_project 12 76215592 76224776 + MGP_C3HHeJ_P0034853 Akap5 protein_coding protein_coding MGP_C3HHeJ_T0034854.1 MGP_C3HHeJ_G0019598.1 mouse_genomes_project 12 76215592 76224778 + MGP_C3HHeJ_P0034854 Akap5 protein_coding protein_coding MGP_C3HHeJ_T0034855.1 MGP_C3HHeJ_G0019598.1 mouse_genomes_project 12 76215606 76220684 + MGP_C3HHeJ_P0034855 Akap5 protein_coding protein_coding MGP_C3HHeJ_T0009700.1 MGP_C3HHeJ_G0007833.1 mouse_genomes_project 12 28428217 28428424 - Gm25243 miRNA miRNA MGP_C3HHeJ_T0101124.1 MGP_C3HHeJ_G0039296.1 mouse_genomes_project 12 102006497 102010162 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101125.1 MGP_C3HHeJ_G0039296.1 mouse_genomes_project 12 102009990 102010642 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0000122.1 MGP_C3HHeJ_G0000092.1 mouse_genomes_project 12 118160843 118190773 - MGP_C3HHeJ_P0000122 Ighv1-81 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000125.1 MGP_C3HHeJ_G0000095.1 mouse_genomes_project 12 118226814 118227107 - MGP_C3HHeJ_P0000125 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034567.1 MGP_C3HHeJ_G0019502.1 mouse_genomes_project 12 55573489 56073970 - MGP_C3HHeJ_P0034567 Slc25a21 protein_coding protein_coding MGP_C3HHeJ_T0034568.1 MGP_C3HHeJ_G0019502.1 mouse_genomes_project 12 55574666 56036066 - MGP_C3HHeJ_P0034568 Slc25a21 protein_coding protein_coding MGP_C3HHeJ_T0034569.1 MGP_C3HHeJ_G0019502.1 mouse_genomes_project 12 55590547 55637672 - Slc25a21 protein_coding processed_transcript MGP_C3HHeJ_T0034570.1 MGP_C3HHeJ_G0019502.1 mouse_genomes_project 12 55635823 55852133 - Slc25a21 protein_coding retained_intron MGP_C3HHeJ_T0035063.1 MGP_C3HHeJ_G0019668.1 mouse_genomes_project 12 84199481 84206909 + MGP_C3HHeJ_P0035063 Acot3 protein_coding protein_coding MGP_C3HHeJ_T0035064.1 MGP_C3HHeJ_G0019668.1 mouse_genomes_project 12 84199488 84206909 + MGP_C3HHeJ_P0035064 Acot3 protein_coding protein_coding MGP_C3HHeJ_T0034279.1 MGP_C3HHeJ_G0019386.1 mouse_genomes_project 12 24222997 24236084 + MGP_C3HHeJ_P0034279 Cmpk2 protein_coding protein_coding MGP_C3HHeJ_T0034819.1 MGP_C3HHeJ_G0019588.1 mouse_genomes_project 12 74738902 75028328 - MGP_C3HHeJ_P0034819 Kcnh5 protein_coding protein_coding MGP_C3HHeJ_T0009782.1 MGP_C3HHeJ_G0007915.1 mouse_genomes_project 12 111229239 111229325 + Mir376c miRNA miRNA MGP_C3HHeJ_T0000053.1 MGP_C3HHeJ_G0000042.1 mouse_genomes_project 12 115455898 115456358 - MGP_C3HHeJ_P0000053 Ighv5-12 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034643.1 MGP_C3HHeJ_G0019525.1 mouse_genomes_project 12 64556749 64597294 - Mis18bp1 protein_coding retained_intron MGP_C3HHeJ_T0034644.1 MGP_C3HHeJ_G0019525.1 mouse_genomes_project 12 64556749 64597270 - MGP_C3HHeJ_P0034644 Mis18bp1 protein_coding protein_coding MGP_C3HHeJ_T0034645.1 MGP_C3HHeJ_G0019525.1 mouse_genomes_project 12 64560340 64562736 - Mis18bp1 protein_coding retained_intron MGP_C3HHeJ_T0034646.1 MGP_C3HHeJ_G0019525.1 mouse_genomes_project 12 64577436 64579753 - Mis18bp1 protein_coding processed_transcript MGP_C3HHeJ_T0034647.1 MGP_C3HHeJ_G0019525.1 mouse_genomes_project 12 64579376 64597256 - Mis18bp1 protein_coding processed_transcript MGP_C3HHeJ_T0034648.1 MGP_C3HHeJ_G0019525.1 mouse_genomes_project 12 64580681 64597268 - Mis18bp1 protein_coding retained_intron MGP_C3HHeJ_T0009694.1 MGP_C3HHeJ_G0007827.1 mouse_genomes_project 12 8517059 8517117 + Mir7675 miRNA miRNA MGP_C3HHeJ_T0009709.1 MGP_C3HHeJ_G0007842.1 mouse_genomes_project 12 58231588 58231658 - Gm27284 miRNA miRNA MGP_C3HHeJ_T0034414.1 MGP_C3HHeJ_G0019439.1 mouse_genomes_project 12 34314659 34324656 - MGP_C3HHeJ_P0034414 Lrrc72 protein_coding protein_coding MGP_C3HHeJ_T0034415.1 MGP_C3HHeJ_G0019439.1 mouse_genomes_project 12 34315862 34363332 - MGP_C3HHeJ_P0034415 Lrrc72 protein_coding protein_coding MGP_C3HHeJ_T0034416.1 MGP_C3HHeJ_G0019439.1 mouse_genomes_project 12 34318587 34324672 - Lrrc72 protein_coding retained_intron MGP_C3HHeJ_T0101669.1 MGP_C3HHeJ_G0039635.1 mouse_genomes_project 12 5713481 5714805 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100100.1 MGP_C3HHeJ_G0038294.1 mouse_genomes_project 12 92214442 92214585 - Gm25776 snoRNA snoRNA MGP_C3HHeJ_T0101680.1 MGP_C3HHeJ_G0039645.1 mouse_genomes_project 12 104885464 104896933 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000115.1 MGP_C3HHeJ_G0000087.1 mouse_genomes_project 12 116974179 116974473 - MGP_C3HHeJ_P0000115 Ighv8-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000116.1 MGP_C3HHeJ_G0000087.1 mouse_genomes_project 12 116974179 116974613 - MGP_C3HHeJ_P0000116 Ighv8-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034498.1 MGP_C3HHeJ_G0019467.1 mouse_genomes_project 12 50182174 50194598 + MGP_C3HHeJ_P0034498 Coch protein_coding protein_coding MGP_C3HHeJ_T0034499.1 MGP_C3HHeJ_G0019467.1 mouse_genomes_project 12 50182174 50194598 + MGP_C3HHeJ_P0034499 Coch protein_coding protein_coding MGP_C3HHeJ_T0000093.1 MGP_C3HHeJ_G0000071.1 mouse_genomes_project 12 116230840 116236341 - MGP_C3HHeJ_P0000093 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034727.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70628992 70649472 + Psma3 protein_coding retained_intron MGP_C3HHeJ_T0034728.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70628992 70649892 + MGP_C3HHeJ_P0034728 Psma3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034729.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70629014 70649475 + MGP_C3HHeJ_P0034729 Psma3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034730.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70629029 70634523 + Psma3 protein_coding retained_intron MGP_C3HHeJ_T0034731.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70629036 70649446 + MGP_C3HHeJ_P0034731 Psma3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034732.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70629040 70639805 + Psma3 protein_coding retained_intron MGP_C3HHeJ_T0034733.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70629068 70650653 + MGP_C3HHeJ_P0034733 Psma3 protein_coding protein_coding MGP_C3HHeJ_T0034734.1 MGP_C3HHeJ_G0019556.1 mouse_genomes_project 12 70641859 70649476 + MGP_C3HHeJ_P0034734 Psma3 protein_coding protein_coding MGP_C3HHeJ_T0000095.1 MGP_C3HHeJ_G0000073.1 mouse_genomes_project 12 116271818 116272275 - MGP_C3HHeJ_P0000095 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035841.1 MGP_C3HHeJ_G0019919.1 mouse_genomes_project 12 115307252 115377670 + MGP_C3HHeJ_P0035841 protein_coding protein_coding MGP_C3HHeJ_T0003339.1 MGP_C3HHeJ_G0003068.1 mouse_genomes_project 12 81669793 81671653 + Gm16572 antisense antisense MGP_C3HHeJ_T0009791.1 MGP_C3HHeJ_G0007924.1 mouse_genomes_project 12 111234672 111234746 + Mir539 miRNA miRNA MGP_C3HHeJ_T0006319.1 MGP_C3HHeJ_G0005260.1 mouse_genomes_project 12 10212269 10216792 + 4930519A11Rik lincRNA lincRNA MGP_C3HHeJ_T0012717.1 MGP_C3HHeJ_G0010821.1 mouse_genomes_project 12 107828999 107829345 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034515.1 MGP_C3HHeJ_G0019476.1 mouse_genomes_project 12 51313673 51783327 + MGP_C3HHeJ_P0034515 Akap6 protein_coding protein_coding MGP_C3HHeJ_T0034448.1 MGP_C3HHeJ_G0019449.1 mouse_genomes_project 12 38388817 38410960 - MGP_C3HHeJ_P0034448 Lsmem1 protein_coding protein_coding MGP_C3HHeJ_T0012689.1 MGP_C3HHeJ_G0010793.1 mouse_genomes_project 12 73741003 73741309 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035546.1 MGP_C3HHeJ_G0019823.1 mouse_genomes_project 12 105947524 106057071 - MGP_C3HHeJ_P0035546 Clmn protein_coding protein_coding MGP_C3HHeJ_T0035547.1 MGP_C3HHeJ_G0019823.1 mouse_genomes_project 12 105947524 106057071 - MGP_C3HHeJ_P0035547 Clmn protein_coding protein_coding MGP_C3HHeJ_T0034346.1 MGP_C3HHeJ_G0019412.1 mouse_genomes_project 12 29552128 29566904 - MGP_C3HHeJ_P0034346 Dus4l protein_coding protein_coding MGP_C3HHeJ_T0035059.1 MGP_C3HHeJ_G0019665.1 mouse_genomes_project 12 84115203 84125336 + MGP_C3HHeJ_P0035059 Acot2 protein_coding protein_coding MGP_C3HHeJ_T0035104.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84538963 84571766 - MGP_C3HHeJ_P0035104 Entpd5 protein_coding protein_coding MGP_C3HHeJ_T0035105.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84538963 84571766 - MGP_C3HHeJ_P0035105 Entpd5 protein_coding protein_coding MGP_C3HHeJ_T0035106.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84538981 84575328 - MGP_C3HHeJ_P0035106 Entpd5 protein_coding protein_coding MGP_C3HHeJ_T0035107.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84538984 84575313 - MGP_C3HHeJ_P0035107 Entpd5 protein_coding protein_coding MGP_C3HHeJ_T0035108.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84541783 84567566 - MGP_C3HHeJ_P0035108 Entpd5 protein_coding protein_coding MGP_C3HHeJ_T0035109.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84542115 84567517 - MGP_C3HHeJ_P0035109 Entpd5 protein_coding protein_coding MGP_C3HHeJ_T0035110.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84545462 84552100 - Entpd5 protein_coding retained_intron MGP_C3HHeJ_T0035111.1 MGP_C3HHeJ_G0019678.1 mouse_genomes_project 12 84569974 84575283 - Entpd5 protein_coding processed_transcript MGP_C3HHeJ_T0009738.1 MGP_C3HHeJ_G0007871.1 mouse_genomes_project 12 110123627 110123725 + Mir342 miRNA miRNA MGP_C3HHeJ_T0009814.1 MGP_C3HHeJ_G0007947.1 mouse_genomes_project 12 114388023 114388098 - Mir6939 miRNA miRNA MGP_C3HHeJ_T0009735.1 MGP_C3HHeJ_G0007868.1 mouse_genomes_project 12 103952465 103952600 + Gm44324 miRNA miRNA MGP_C3HHeJ_T0034955.1 MGP_C3HHeJ_G0019641.1 mouse_genomes_project 12 81269654 81410422 - MGP_C3HHeJ_P0034955 Slc8a3 protein_coding protein_coding MGP_C3HHeJ_T0034956.1 MGP_C3HHeJ_G0019641.1 mouse_genomes_project 12 81270015 81410217 - MGP_C3HHeJ_P0034956 Slc8a3 protein_coding protein_coding MGP_C3HHeJ_T0034957.1 MGP_C3HHeJ_G0019641.1 mouse_genomes_project 12 81271185 81410438 - MGP_C3HHeJ_P0034957 Slc8a3 protein_coding protein_coding MGP_C3HHeJ_T0034958.1 MGP_C3HHeJ_G0019641.1 mouse_genomes_project 12 81274136 81369828 - MGP_C3HHeJ_P0034958 Slc8a3 protein_coding protein_coding MGP_C3HHeJ_T0034959.1 MGP_C3HHeJ_G0019641.1 mouse_genomes_project 12 81285766 81410438 - Slc8a3 protein_coding retained_intron MGP_C3HHeJ_T0006377.1 MGP_C3HHeJ_G0005308.1 mouse_genomes_project 12 107688248 107691702 + Gm17032 lincRNA lincRNA MGP_C3HHeJ_T0000099.1 MGP_C3HHeJ_G0000077.1 mouse_genomes_project 12 116351306 116351777 - MGP_C3HHeJ_P0000099 Ighv1-7 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035304.1 MGP_C3HHeJ_G0019739.1 mouse_genomes_project 12 91398953 91412847 - MGP_C3HHeJ_P0035304 Dio2 protein_coding protein_coding MGP_C3HHeJ_T0009743.1 MGP_C3HHeJ_G0007876.1 mouse_genomes_project 12 111044813 111044893 + Mir1906-2 miRNA miRNA MGP_C3HHeJ_T0009788.1 MGP_C3HHeJ_G0007921.1 mouse_genomes_project 12 111233365 111233440 + Mir381 miRNA miRNA MGP_C3HHeJ_T0000103.1 MGP_C3HHeJ_G0000080.1 mouse_genomes_project 12 116408090 116408554 - MGP_C3HHeJ_P0000103 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035765.1 MGP_C3HHeJ_G0019891.1 mouse_genomes_project 12 113795101 113817525 + MGP_C3HHeJ_P0035765 Aspg protein_coding protein_coding MGP_C3HHeJ_T0034500.1 MGP_C3HHeJ_G0019468.1 mouse_genomes_project 12 50197365 50284370 - MGP_C3HHeJ_P0034500 Strn3 protein_coding protein_coding MGP_C3HHeJ_T0034501.1 MGP_C3HHeJ_G0019468.1 mouse_genomes_project 12 50197365 50284370 - MGP_C3HHeJ_P0034501 Strn3 protein_coding protein_coding MGP_C3HHeJ_T0000841.1 MGP_C3HHeJ_G0000782.1 mouse_genomes_project 12 114421630 114424210 - TEC TEC MGP_C3HHeJ_T0034288.1 MGP_C3HHeJ_G0019393.1 mouse_genomes_project 12 26520834 26527611 + MGP_C3HHeJ_P0034288 Adi1 protein_coding protein_coding MGP_C3HHeJ_T0034289.1 MGP_C3HHeJ_G0019393.1 mouse_genomes_project 12 26521087 26527165 + MGP_C3HHeJ_P0034289 Adi1 protein_coding protein_coding MGP_C3HHeJ_T0034290.1 MGP_C3HHeJ_G0019393.1 mouse_genomes_project 12 26523121 26524986 + Adi1 protein_coding processed_transcript MGP_C3HHeJ_T0003341.1 MGP_C3HHeJ_G0003070.1 mouse_genomes_project 12 83136450 83175733 - Gm29530 antisense antisense MGP_C3HHeJ_T0009812.1 MGP_C3HHeJ_G0007945.1 mouse_genomes_project 12 113797701 113797761 - Mir3073b miRNA miRNA MGP_C3HHeJ_T0012711.1 MGP_C3HHeJ_G0010815.1 mouse_genomes_project 12 102070209 102071001 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011245.1 MGP_C3HHeJ_G0009378.1 mouse_genomes_project 12 111044611 111044708 + Gm27335 misc_RNA misc_RNA MGP_C3HHeJ_T0034928.1 MGP_C3HHeJ_G0019630.1 mouse_genomes_project 12 80367174 80465025 - MGP_C3HHeJ_P0034928 Dcaf5 protein_coding protein_coding MGP_C3HHeJ_T0034814.1 MGP_C3HHeJ_G0019584.1 mouse_genomes_project 12 73745341 73765450 + MGP_C3HHeJ_P0034814 Snapc1 protein_coding protein_coding MGP_C3HHeJ_T0034690.1 MGP_C3HHeJ_G0019544.1 mouse_genomes_project 12 69307541 69338487 + MGP_C3HHeJ_P0034690 Atp5s protein_coding protein_coding MGP_C3HHeJ_T0034535.1 MGP_C3HHeJ_G0019485.1 mouse_genomes_project 12 53782151 54018695 - MGP_C3HHeJ_P0034535 protein_coding protein_coding MGP_C3HHeJ_T0034536.1 MGP_C3HHeJ_G0019485.1 mouse_genomes_project 12 53782166 53790680 - protein_coding retained_intron MGP_C3HHeJ_T0034537.1 MGP_C3HHeJ_G0019485.1 mouse_genomes_project 12 53790332 54018693 - protein_coding retained_intron MGP_C3HHeJ_T0034938.1 MGP_C3HHeJ_G0019637.1 mouse_genomes_project 12 80841634 80939942 + MGP_C3HHeJ_P0034938 Susd6 protein_coding protein_coding MGP_C3HHeJ_T0006420.1 MGP_C3HHeJ_G0005327.1 mouse_genomes_project 12 112422516 112425292 + 4921507G05Rik lincRNA lincRNA MGP_C3HHeJ_T0035374.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100701707 100754869 + Tdp1 protein_coding retained_intron MGP_C3HHeJ_T0035375.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100701724 100704878 + Tdp1 protein_coding processed_transcript MGP_C3HHeJ_T0035376.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100701727 100774486 + MGP_C3HHeJ_P0035376 Tdp1 protein_coding protein_coding MGP_C3HHeJ_T0035377.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100703674 100708942 + MGP_C3HHeJ_P0035377 Tdp1 protein_coding protein_coding MGP_C3HHeJ_T0035378.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100708776 100774481 + MGP_C3HHeJ_P0035378 Tdp1 protein_coding protein_coding MGP_C3HHeJ_T0035379.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100729246 100730178 + Tdp1 protein_coding retained_intron MGP_C3HHeJ_T0035380.1 MGP_C3HHeJ_G0019756.1 mouse_genomes_project 12 100731604 100774486 + Tdp1 protein_coding retained_intron MGP_C3HHeJ_T0101682.1 MGP_C3HHeJ_G0039647.1 mouse_genomes_project 12 105211488 105219138 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009818.1 MGP_C3HHeJ_G0007951.1 mouse_genomes_project 12 116310800 116310860 - Mir7094-2 miRNA miRNA MGP_C3HHeJ_T0034893.1 MGP_C3HHeJ_G0019612.1 mouse_genomes_project 12 77557989 77559819 - MGP_C3HHeJ_P0034893 protein_coding protein_coding MGP_C3HHeJ_T0006315.1 MGP_C3HHeJ_G0005256.1 mouse_genomes_project 12 6001592 6005865 - 9930038B18Rik lincRNA lincRNA MGP_C3HHeJ_T0097850.1 MGP_C3HHeJ_G0036062.1 mouse_genomes_project 12 33040903 33042521 + pseudogene pseudogene MGP_C3HHeJ_T0012702.1 MGP_C3HHeJ_G0010806.1 mouse_genomes_project 12 87396441 87396556 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000241.1 MGP_C3HHeJ_G0000191.1 mouse_genomes_project 12 116430605 116430898 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000840.1 MGP_C3HHeJ_G0000781.1 mouse_genomes_project 12 114046391 114050165 - TEC TEC MGP_C3HHeJ_T0034571.1 MGP_C3HHeJ_G0019503.1 mouse_genomes_project 12 56113298 56122763 + MGP_C3HHeJ_P0034571 Prps1l3 protein_coding protein_coding MGP_C3HHeJ_T0012720.1 MGP_C3HHeJ_G0010824.1 mouse_genomes_project 12 108272825 108273306 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098842.1 MGP_C3HHeJ_G0037036.1 mouse_genomes_project 12 52906099 52906248 + Gm22220 snRNA snRNA MGP_C3HHeJ_T0017077.1 MGP_C3HHeJ_G0014989.1 mouse_genomes_project 12 31326727 31365219 - Atxn7l1os2 processed_transcript processed_transcript MGP_C3HHeJ_T0034760.1 MGP_C3HHeJ_G0019566.1 mouse_genomes_project 12 71784657 71864493 - MGP_C3HHeJ_P0034760 Ccdc175 protein_coding protein_coding MGP_C3HHeJ_T0098012.1 MGP_C3HHeJ_G0036224.1 mouse_genomes_project 12 51671159 51671278 - n-R5s58 rRNA rRNA MGP_C3HHeJ_T0003319.1 MGP_C3HHeJ_G0003052.1 mouse_genomes_project 12 38242920 38244853 + Arl4aos antisense antisense MGP_C3HHeJ_T0006395.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111040005 111045592 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006396.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111040009 111073232 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006397.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111040011 111060691 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006398.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111041027 111063186 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006399.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111044770 111059822 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006400.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111045632 111073237 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006401.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111046619 111073230 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006402.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111046673 111073233 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006403.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111050676 111060305 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0006404.1 MGP_C3HHeJ_G0005322.1 mouse_genomes_project 12 111050774 111051295 + Meg3 lincRNA lincRNA MGP_C3HHeJ_T0000054.1 MGP_C3HHeJ_G0000043.1 mouse_genomes_project 12 115662290 115662750 - MGP_C3HHeJ_P0000054 Ighv5-12-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034303.1 MGP_C3HHeJ_G0019398.1 mouse_genomes_project 12 27918909 27988216 - MGP_C3HHeJ_P0034303 Tpo protein_coding protein_coding MGP_C3HHeJ_T0034304.1 MGP_C3HHeJ_G0019398.1 mouse_genomes_project 12 27948251 27951113 - Tpo protein_coding retained_intron MGP_C3HHeJ_T0034305.1 MGP_C3HHeJ_G0019398.1 mouse_genomes_project 12 27972290 27987488 - MGP_C3HHeJ_P0034305 Tpo protein_coding protein_coding MGP_C3HHeJ_T0034981.1 MGP_C3HHeJ_G0019647.1 mouse_genomes_project 12 81642393 81652334 - MGP_C3HHeJ_P0034981 Adam21 protein_coding protein_coding MGP_C3HHeJ_T0098020.1 MGP_C3HHeJ_G0036232.1 mouse_genomes_project 12 91470645 91470762 + n-R5s65 rRNA rRNA MGP_C3HHeJ_T0009789.1 MGP_C3HHeJ_G0007922.1 mouse_genomes_project 12 111233876 111233958 + Mir487b miRNA miRNA MGP_C3HHeJ_T0006389.1 MGP_C3HHeJ_G0005317.1 mouse_genomes_project 12 108587512 108590694 + Gm2800 lincRNA lincRNA MGP_C3HHeJ_T0035089.1 MGP_C3HHeJ_G0019676.1 mouse_genomes_project 12 84510750 84527275 - MGP_C3HHeJ_P0035089 Fam161b protein_coding protein_coding MGP_C3HHeJ_T0035090.1 MGP_C3HHeJ_G0019676.1 mouse_genomes_project 12 84510758 84527263 - MGP_C3HHeJ_P0035090 Fam161b protein_coding protein_coding MGP_C3HHeJ_T0035091.1 MGP_C3HHeJ_G0019676.1 mouse_genomes_project 12 84511933 84527234 - Fam161b protein_coding retained_intron MGP_C3HHeJ_T0035092.1 MGP_C3HHeJ_G0019676.1 mouse_genomes_project 12 84513800 84520297 - Fam161b protein_coding retained_intron MGP_C3HHeJ_T0035853.1 MGP_C3HHeJ_G0019923.1 mouse_genomes_project 12 118453539 118514426 - MGP_C3HHeJ_P0035853 Wdr60 protein_coding protein_coding MGP_C3HHeJ_T0035811.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114871127 114908564 + MGP_C3HHeJ_P0035811 Mta1 protein_coding protein_coding MGP_C3HHeJ_T0035812.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114871127 114908564 + MGP_C3HHeJ_P0035812 Mta1 protein_coding protein_coding MGP_C3HHeJ_T0035813.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114871127 114908563 + MGP_C3HHeJ_P0035813 Mta1 protein_coding protein_coding MGP_C3HHeJ_T0035814.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114871127 114908564 + MGP_C3HHeJ_P0035814 Mta1 protein_coding protein_coding MGP_C3HHeJ_T0035815.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114871172 114908531 + MGP_C3HHeJ_P0035815 Mta1 protein_coding protein_coding MGP_C3HHeJ_T0035816.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114871248 114908030 + Mta1 protein_coding processed_transcript MGP_C3HHeJ_T0035817.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114902835 114904877 + Mta1 protein_coding processed_transcript MGP_C3HHeJ_T0035818.1 MGP_C3HHeJ_G0019914.1 mouse_genomes_project 12 114903051 114904835 + Mta1 protein_coding processed_transcript MGP_C3HHeJ_T0006387.1 MGP_C3HHeJ_G0005315.1 mouse_genomes_project 12 108529387 108532279 + Gm16085 lincRNA lincRNA MGP_C3HHeJ_T0098845.1 MGP_C3HHeJ_G0037039.1 mouse_genomes_project 12 53422682 53422846 + Gm22634 snRNA snRNA MGP_C3HHeJ_T0003342.1 MGP_C3HHeJ_G0003071.1 mouse_genomes_project 12 83744126 83749860 - antisense antisense MGP_C3HHeJ_T0034418.1 MGP_C3HHeJ_G0019441.1 mouse_genomes_project 12 34502357 34503297 - MGP_C3HHeJ_P0034418 D630036H23Rik protein_coding protein_coding MGP_C3HHeJ_T0034476.1 MGP_C3HHeJ_G0019458.1 mouse_genomes_project 12 42645352 42925465 + MGP_C3HHeJ_P0034476 Nrcam protein_coding protein_coding MGP_C3HHeJ_T0034477.1 MGP_C3HHeJ_G0019458.1 mouse_genomes_project 12 42645352 42925465 + MGP_C3HHeJ_P0034477 Nrcam protein_coding protein_coding MGP_C3HHeJ_T0034478.1 MGP_C3HHeJ_G0019458.1 mouse_genomes_project 12 42852193 42922221 + MGP_C3HHeJ_P0034478 Nrcam protein_coding unknown_likely_coding MGP_C3HHeJ_T0098018.1 MGP_C3HHeJ_G0036230.1 mouse_genomes_project 12 82654607 82654710 - n-R5s63 rRNA rRNA MGP_C3HHeJ_T0100102.1 MGP_C3HHeJ_G0038296.1 mouse_genomes_project 12 103184994 103185209 - Gm25203 snoRNA snoRNA MGP_C3HHeJ_T0035219.1 MGP_C3HHeJ_G0019714.1 mouse_genomes_project 12 86970564 86985321 + MGP_C3HHeJ_P0035219 Vash1 protein_coding protein_coding MGP_C3HHeJ_T0034627.1 MGP_C3HHeJ_G0019516.1 mouse_genomes_project 12 60680894 60770665 + Lrfn5 protein_coding processed_transcript MGP_C3HHeJ_T0034628.1 MGP_C3HHeJ_G0019516.1 mouse_genomes_project 12 60680911 60828470 + Lrfn5 protein_coding processed_transcript MGP_C3HHeJ_T0034629.1 MGP_C3HHeJ_G0019516.1 mouse_genomes_project 12 60681689 61024862 + MGP_C3HHeJ_P0034629 Lrfn5 protein_coding protein_coding MGP_C3HHeJ_T0034630.1 MGP_C3HHeJ_G0019516.1 mouse_genomes_project 12 60681689 61010667 + MGP_C3HHeJ_P0034630 Lrfn5 protein_coding protein_coding MGP_C3HHeJ_T0034631.1 MGP_C3HHeJ_G0019516.1 mouse_genomes_project 12 61023201 61025276 + Lrfn5 protein_coding retained_intron MGP_C3HHeJ_T0101679.1 MGP_C3HHeJ_G0039644.1 mouse_genomes_project 12 104885464 104896933 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003314.1 MGP_C3HHeJ_G0003047.1 mouse_genomes_project 12 538688 549486 - Dtnbos antisense antisense MGP_C3HHeJ_T0035718.1 MGP_C3HHeJ_G0019879.1 mouse_genomes_project 12 113229408 113315993 + MGP_C3HHeJ_P0035718 Mark3 protein_coding protein_coding MGP_C3HHeJ_T0035719.1 MGP_C3HHeJ_G0019879.1 mouse_genomes_project 12 113229408 113315993 + MGP_C3HHeJ_P0035719 Mark3 protein_coding protein_coding MGP_C3HHeJ_T0034505.1 MGP_C3HHeJ_G0019471.1 mouse_genomes_project 12 50481416 50577750 - MGP_C3HHeJ_P0034505 Heatr5a protein_coding unknown_likely_coding MGP_C3HHeJ_T0034506.1 MGP_C3HHeJ_G0019471.1 mouse_genomes_project 12 50481425 50577828 - MGP_C3HHeJ_P0034506 Heatr5a protein_coding protein_coding MGP_C3HHeJ_T0034753.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71766838 71777648 + MGP_C3HHeJ_P0034753 Jkamp protein_coding protein_coding MGP_C3HHeJ_T0034754.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71767038 71776796 + Jkamp protein_coding processed_transcript MGP_C3HHeJ_T0034755.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71767106 71784227 + MGP_C3HHeJ_P0034755 Jkamp protein_coding protein_coding MGP_C3HHeJ_T0034756.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71767106 71784827 + MGP_C3HHeJ_P0034756 Jkamp protein_coding protein_coding MGP_C3HHeJ_T0034757.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71771944 71777648 + Jkamp protein_coding retained_intron MGP_C3HHeJ_T0034758.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71772485 71777522 + Jkamp protein_coding retained_intron MGP_C3HHeJ_T0034759.1 MGP_C3HHeJ_G0019565.1 mouse_genomes_project 12 71783140 71784192 + Jkamp protein_coding retained_intron MGP_C3HHeJ_T0034810.1 MGP_C3HHeJ_G0019583.1 mouse_genomes_project 12 73687517 73712486 + MGP_C3HHeJ_P0034810 Hif1a protein_coding protein_coding MGP_C3HHeJ_T0034811.1 MGP_C3HHeJ_G0019583.1 mouse_genomes_project 12 73687903 73726741 + MGP_C3HHeJ_P0034811 Hif1a protein_coding protein_coding MGP_C3HHeJ_T0034812.1 MGP_C3HHeJ_G0019583.1 mouse_genomes_project 12 73705981 73707913 + Hif1a protein_coding retained_intron MGP_C3HHeJ_T0034813.1 MGP_C3HHeJ_G0019583.1 mouse_genomes_project 12 73717073 73719277 + Hif1a protein_coding processed_transcript MGP_C3HHeJ_T0098846.1 MGP_C3HHeJ_G0037040.1 mouse_genomes_project 12 53433497 53433661 - Gm25679 snRNA snRNA MGP_C3HHeJ_T0000079.1 MGP_C3HHeJ_G0000062.1 mouse_genomes_project 12 116048995 116049532 - MGP_C3HHeJ_P0000079 Ighv7-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000080.1 MGP_C3HHeJ_G0000062.1 mouse_genomes_project 12 116048995 116049458 - MGP_C3HHeJ_P0000080 Ighv7-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035842.1 MGP_C3HHeJ_G0019920.1 mouse_genomes_project 12 115307299 115377670 + MGP_C3HHeJ_P0035842 protein_coding protein_coding MGP_C3HHeJ_T0100081.1 MGP_C3HHeJ_G0038275.1 mouse_genomes_project 12 55091493 55091623 - Gm25917 snoRNA snoRNA MGP_C3HHeJ_T0034179.1 MGP_C3HHeJ_G0019353.1 mouse_genomes_project 12 10566378 10594351 - MGP_C3HHeJ_P0034179 Ddx1 protein_coding protein_coding MGP_C3HHeJ_T0000102.1 MGP_C3HHeJ_G0000079.1 mouse_genomes_project 12 116388683 116389130 - MGP_C3HHeJ_P0000102 Ighv10-1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035754.1 MGP_C3HHeJ_G0019890.1 mouse_genomes_project 12 113666664 113668869 - MGP_C3HHeJ_P0035754 Rd3l protein_coding protein_coding MGP_C3HHeJ_T0035755.1 MGP_C3HHeJ_G0019890.1 mouse_genomes_project 12 113666665 113667698 - MGP_C3HHeJ_P0035755 Rd3l protein_coding protein_coding MGP_C3HHeJ_T0035756.1 MGP_C3HHeJ_G0019890.1 mouse_genomes_project 12 113666698 113668607 - MGP_C3HHeJ_P0035756 Rd3l protein_coding protein_coding MGP_C3HHeJ_T0035757.1 MGP_C3HHeJ_G0019890.1 mouse_genomes_project 12 113666742 113668025 - MGP_C3HHeJ_P0035757 Rd3l protein_coding protein_coding MGP_C3HHeJ_T0035758.1 MGP_C3HHeJ_G0019890.1 mouse_genomes_project 12 113666744 113668654 - MGP_C3HHeJ_P0035758 Rd3l protein_coding protein_coding MGP_C3HHeJ_T0034166.1 MGP_C3HHeJ_G0019344.1 mouse_genomes_project 12 8296859 8356716 - MGP_C3HHeJ_P0034166 Kcns3 protein_coding protein_coding MGP_C3HHeJ_T0034167.1 MGP_C3HHeJ_G0019344.1 mouse_genomes_project 12 8296859 8356247 - MGP_C3HHeJ_P0034167 Kcns3 protein_coding protein_coding MGP_C3HHeJ_T0006351.1 MGP_C3HHeJ_G0005283.1 mouse_genomes_project 12 80123534 80129126 + Gm26669 lincRNA lincRNA MGP_C3HHeJ_T0034667.1 MGP_C3HHeJ_G0019533.1 mouse_genomes_project 12 68751882 68761232 - MGP_C3HHeJ_P0034667 Dnaaf2 protein_coding protein_coding MGP_C3HHeJ_T0000248.1 MGP_C3HHeJ_G0000198.1 mouse_genomes_project 12 116952863 116953164 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000097.1 MGP_C3HHeJ_G0000075.1 mouse_genomes_project 12 116297798 116298238 - MGP_C3HHeJ_P0000097 Ighv8-2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034362.1 MGP_C3HHeJ_G0019417.1 mouse_genomes_project 12 30114025 30152719 - MGP_C3HHeJ_P0034362 Pik3cg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034363.1 MGP_C3HHeJ_G0019417.1 mouse_genomes_project 12 30114724 30152767 - MGP_C3HHeJ_P0034363 Pik3cg protein_coding protein_coding MGP_C3HHeJ_T0034364.1 MGP_C3HHeJ_G0019417.1 mouse_genomes_project 12 30116179 30152582 - MGP_C3HHeJ_P0034364 Pik3cg protein_coding protein_coding MGP_C3HHeJ_T0034365.1 MGP_C3HHeJ_G0019417.1 mouse_genomes_project 12 30144666 30145125 - Pik3cg protein_coding retained_intron MGP_C3HHeJ_T0034520.1 MGP_C3HHeJ_G0019480.1 mouse_genomes_project 12 53377301 53401328 - MGP_C3HHeJ_P0034520 Eapp protein_coding protein_coding MGP_C3HHeJ_T0034521.1 MGP_C3HHeJ_G0019480.1 mouse_genomes_project 12 53377418 53401291 - MGP_C3HHeJ_P0034521 Eapp protein_coding protein_coding MGP_C3HHeJ_T0034522.1 MGP_C3HHeJ_G0019480.1 mouse_genomes_project 12 53389509 53401350 - MGP_C3HHeJ_P0034522 Eapp protein_coding protein_coding MGP_C3HHeJ_T0034523.1 MGP_C3HHeJ_G0019480.1 mouse_genomes_project 12 53393657 53401369 - MGP_C3HHeJ_P0034523 Eapp protein_coding protein_coding MGP_C3HHeJ_T0009712.1 MGP_C3HHeJ_G0007845.1 mouse_genomes_project 12 68934307 68934387 - miRNA miRNA MGP_C3HHeJ_T0012681.1 MGP_C3HHeJ_G0010785.1 mouse_genomes_project 12 56444618 56446202 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034964.1 MGP_C3HHeJ_G0019645.1 mouse_genomes_project 12 81497175 81499679 - MGP_C3HHeJ_P0034964 Adam4 protein_coding protein_coding MGP_C3HHeJ_T0034159.1 MGP_C3HHeJ_G0019340.1 mouse_genomes_project 12 6169162 6175546 + MGP_C3HHeJ_P0034159 Ttc32 protein_coding protein_coding MGP_C3HHeJ_T0034674.1 MGP_C3HHeJ_G0019537.1 mouse_genomes_project 12 68865942 68870613 + Klhdc2 protein_coding retained_intron MGP_C3HHeJ_T0034675.1 MGP_C3HHeJ_G0019537.1 mouse_genomes_project 12 68865983 68881265 + MGP_C3HHeJ_P0034675 Klhdc2 protein_coding protein_coding MGP_C3HHeJ_T0034676.1 MGP_C3HHeJ_G0019537.1 mouse_genomes_project 12 68866016 68879204 + Klhdc2 protein_coding retained_intron MGP_C3HHeJ_T0034677.1 MGP_C3HHeJ_G0019537.1 mouse_genomes_project 12 68871891 68879232 + Klhdc2 protein_coding retained_intron MGP_C3HHeJ_T0034514.1 MGP_C3HHeJ_G0019475.1 mouse_genomes_project 12 51118615 51182142 + MGP_C3HHeJ_P0034514 Arhgap5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003321.1 MGP_C3HHeJ_G0003054.1 mouse_genomes_project 12 38421809 38424605 - antisense antisense MGP_C3HHeJ_T0034920.1 MGP_C3HHeJ_G0019626.1 mouse_genomes_project 12 79208521 79280683 - MGP_C3HHeJ_P0034920 Zfyve26 protein_coding protein_coding MGP_C3HHeJ_T0006359.1 MGP_C3HHeJ_G0005291.1 mouse_genomes_project 12 86222825 86240313 - Gm26531 lincRNA lincRNA MGP_C3HHeJ_T0034679.1 MGP_C3HHeJ_G0019539.1 mouse_genomes_project 12 68946030 68946654 - MGP_C3HHeJ_P0034679 Gm9887 protein_coding protein_coding MGP_C3HHeJ_T0100060.1 MGP_C3HHeJ_G0038254.1 mouse_genomes_project 12 9274266 9274395 + Gm25610 snoRNA snoRNA MGP_C3HHeJ_T0035774.1 MGP_C3HHeJ_G0019898.1 mouse_genomes_project 12 114373636 114377968 + MGP_C3HHeJ_P0035774 Siva1 protein_coding protein_coding MGP_C3HHeJ_T0035775.1 MGP_C3HHeJ_G0019898.1 mouse_genomes_project 12 114373636 114377968 + MGP_C3HHeJ_P0035775 Siva1 protein_coding protein_coding MGP_C3HHeJ_T0035541.1 MGP_C3HHeJ_G0019818.1 mouse_genomes_project 12 105556890 105563984 + MGP_C3HHeJ_P0035541 protein_coding protein_coding MGP_C3HHeJ_T0000839.1 MGP_C3HHeJ_G0000780.1 mouse_genomes_project 12 111174136 111182834 + TEC TEC MGP_C3HHeJ_T0034939.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002642 81007747 + MGP_C3HHeJ_P0034939 Srsf5 protein_coding protein_coding MGP_C3HHeJ_T0034940.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002658 81007743 + Srsf5 protein_coding retained_intron MGP_C3HHeJ_T0034941.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002658 81007743 + MGP_C3HHeJ_P0034941 Srsf5 protein_coding protein_coding MGP_C3HHeJ_T0034942.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002670 81007743 + Srsf5 protein_coding retained_intron MGP_C3HHeJ_T0034943.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002670 81007743 + MGP_C3HHeJ_P0034943 Srsf5 protein_coding protein_coding MGP_C3HHeJ_T0034944.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002670 81007743 + MGP_C3HHeJ_P0034944 Srsf5 protein_coding protein_coding MGP_C3HHeJ_T0034945.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002672 81003987 + Srsf5 protein_coding processed_transcript MGP_C3HHeJ_T0034946.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002686 81005644 + Srsf5 protein_coding processed_transcript MGP_C3HHeJ_T0034947.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002708 81004668 + MGP_C3HHeJ_P0034947 Srsf5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034948.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002717 81004110 + Srsf5 protein_coding processed_transcript MGP_C3HHeJ_T0034949.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81002723 81007743 + MGP_C3HHeJ_P0034949 Srsf5 protein_coding protein_coding MGP_C3HHeJ_T0034950.1 MGP_C3HHeJ_G0019638.1 mouse_genomes_project 12 81003514 81007737 + Srsf5 protein_coding retained_intron MGP_C3HHeJ_T0034088.1 MGP_C3HHeJ_G0019314.1 mouse_genomes_project 12 1061218 1067686 + MGP_C3HHeJ_P0034088 Ptrhd1 protein_coding protein_coding MGP_C3HHeJ_T0035286.1 MGP_C3HHeJ_G0019735.1 mouse_genomes_project 12 88541711 88542209 + MGP_C3HHeJ_P0035286 protein_coding protein_coding MGP_C3HHeJ_T0098848.1 MGP_C3HHeJ_G0037042.1 mouse_genomes_project 12 54738174 54738277 - Gm22296 snRNA snRNA MGP_C3HHeJ_T0034074.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 954013 1043002 + Adcy3 protein_coding retained_intron MGP_C3HHeJ_T0034075.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 954014 1043002 + MGP_C3HHeJ_P0034075 Adcy3 protein_coding protein_coding MGP_C3HHeJ_T0034076.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 954307 1043002 + MGP_C3HHeJ_P0034076 Adcy3 protein_coding protein_coding MGP_C3HHeJ_T0034077.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 954312 1043001 + MGP_C3HHeJ_P0034077 Adcy3 protein_coding protein_coding MGP_C3HHeJ_T0034078.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 955063 1043001 + MGP_C3HHeJ_P0034078 Adcy3 protein_coding protein_coding MGP_C3HHeJ_T0034079.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 984164 1013273 + Adcy3 protein_coding processed_transcript MGP_C3HHeJ_T0034080.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 1024404 1026475 + Adcy3 protein_coding retained_intron MGP_C3HHeJ_T0034083.1 MGP_C3HHeJ_G0019312.1 mouse_genomes_project 12 1032833 1035926 + Adcy3 protein_coding retained_intron MGP_C3HHeJ_T0034779.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72583402 72623282 - MGP_C3HHeJ_P0034779 4930447C04Rik protein_coding protein_coding MGP_C3HHeJ_T0034780.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72583402 72623136 - MGP_C3HHeJ_P0034780 4930447C04Rik protein_coding protein_coding MGP_C3HHeJ_T0034781.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72596780 72611668 - MGP_C3HHeJ_P0034781 4930447C04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034782.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72596834 72611864 - 4930447C04Rik protein_coding retained_intron MGP_C3HHeJ_T0034783.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72596888 72611662 - 4930447C04Rik protein_coding processed_transcript MGP_C3HHeJ_T0034784.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72611624 72623233 - MGP_C3HHeJ_P0034784 4930447C04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034785.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72617013 72646848 - MGP_C3HHeJ_P0034785 4930447C04Rik protein_coding protein_coding MGP_C3HHeJ_T0034786.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72618541 72643712 - MGP_C3HHeJ_P0034786 4930447C04Rik protein_coding protein_coding MGP_C3HHeJ_T0034787.1 MGP_C3HHeJ_G0019573.1 mouse_genomes_project 12 72618545 72646157 - MGP_C3HHeJ_P0034787 4930447C04Rik protein_coding protein_coding MGP_C3HHeJ_T0009749.1 MGP_C3HHeJ_G0007882.1 mouse_genomes_project 12 111087610 111087677 + Mir540 miRNA miRNA MGP_C3HHeJ_T0100092.1 MGP_C3HHeJ_G0038286.1 mouse_genomes_project 12 72860351 72860483 - Gm23910 snoRNA snoRNA MGP_C3HHeJ_T0009785.1 MGP_C3HHeJ_G0007918.1 mouse_genomes_project 12 111230299 111230419 - Gm25252 miRNA miRNA MGP_C3HHeJ_T0034180.1 MGP_C3HHeJ_G0019354.1 mouse_genomes_project 12 10619759 10950814 + MGP_C3HHeJ_P0034180 Nbas protein_coding protein_coding MGP_C3HHeJ_T0017078.1 MGP_C3HHeJ_G0014990.1 mouse_genomes_project 12 43794957 43799475 + Gm9921 processed_transcript processed_transcript MGP_C3HHeJ_T0000117.1 MGP_C3HHeJ_G0000088.1 mouse_genomes_project 12 117176374 117176807 - MGP_C3HHeJ_P0000117 Ighv1-63 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035621.1 MGP_C3HHeJ_G0019850.1 mouse_genomes_project 12 110274294 110299793 + MGP_C3HHeJ_P0035621 Yy1 protein_coding protein_coding MGP_C3HHeJ_T0035622.1 MGP_C3HHeJ_G0019850.1 mouse_genomes_project 12 110289547 110298724 + Yy1 protein_coding retained_intron MGP_C3HHeJ_T0035562.1 MGP_C3HHeJ_G0019832.1 mouse_genomes_project 12 106733917 106778422 + MGP_C3HHeJ_P0035562 D430019H16Rik protein_coding protein_coding MGP_C3HHeJ_T0006373.1 MGP_C3HHeJ_G0005305.1 mouse_genomes_project 12 103670623 103679134 - Gm21971 lincRNA lincRNA MGP_C3HHeJ_T0035771.1 MGP_C3HHeJ_G0019896.1 mouse_genomes_project 12 114312063 114339373 + MGP_C3HHeJ_P0035771 Inf2 protein_coding protein_coding MGP_C3HHeJ_T0035114.1 MGP_C3HHeJ_G0019680.1 mouse_genomes_project 12 84584428 84585811 + MGP_C3HHeJ_P0035114 Rnf113a2 protein_coding protein_coding MGP_C3HHeJ_T0017091.1 MGP_C3HHeJ_G0015000.1 mouse_genomes_project 12 105111536 105123505 - Gm28577 processed_transcript processed_transcript MGP_C3HHeJ_T0035180.1 MGP_C3HHeJ_G0019705.1 mouse_genomes_project 12 85827579 85869982 + MGP_C3HHeJ_P0035180 Jdp2 protein_coding protein_coding MGP_C3HHeJ_T0035181.1 MGP_C3HHeJ_G0019705.1 mouse_genomes_project 12 85827890 85869981 + MGP_C3HHeJ_P0035181 Jdp2 protein_coding protein_coding MGP_C3HHeJ_T0035182.1 MGP_C3HHeJ_G0019705.1 mouse_genomes_project 12 85828492 85869982 + MGP_C3HHeJ_P0035182 Jdp2 protein_coding protein_coding MGP_C3HHeJ_T0000237.1 MGP_C3HHeJ_G0000187.1 mouse_genomes_project 12 116359729 116360027 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0000226.1 MGP_C3HHeJ_G0000176.1 mouse_genomes_project 12 115864055 115864519 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0009808.1 MGP_C3HHeJ_G0007941.1 mouse_genomes_project 12 111254895 111254978 + Mir3072 miRNA miRNA MGP_C3HHeJ_T0006348.1 MGP_C3HHeJ_G0005282.1 mouse_genomes_project 12 78142996 78154759 + lincRNA lincRNA MGP_C3HHeJ_T0006349.1 MGP_C3HHeJ_G0005282.1 mouse_genomes_project 12 78144485 78146868 + lincRNA lincRNA MGP_C3HHeJ_T0006350.1 MGP_C3HHeJ_G0005282.1 mouse_genomes_project 12 78146788 78154858 + lincRNA lincRNA MGP_C3HHeJ_T0034125.1 MGP_C3HHeJ_G0019333.1 mouse_genomes_project 12 5532065 5534288 - MGP_C3HHeJ_P0034125 Rhob protein_coding protein_coding MGP_C3HHeJ_T0012716.1 MGP_C3HHeJ_G0010820.1 mouse_genomes_project 12 105366014 105367101 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003322.1 MGP_C3HHeJ_G0003055.1 mouse_genomes_project 12 52716818 52734106 - 1700060O08Rik antisense antisense MGP_C3HHeJ_T0035879.1 MGP_C3HHeJ_G0019935.1 mouse_genomes_project 12 122323340 122396827 + MGP_C3HHeJ_P0035879 Tmem196 protein_coding protein_coding MGP_C3HHeJ_T0035880.1 MGP_C3HHeJ_G0019935.1 mouse_genomes_project 12 122323792 122396429 + MGP_C3HHeJ_P0035880 Tmem196 protein_coding protein_coding MGP_C3HHeJ_T0035881.1 MGP_C3HHeJ_G0019935.1 mouse_genomes_project 12 122323806 122392501 + MGP_C3HHeJ_P0035881 Tmem196 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035882.1 MGP_C3HHeJ_G0019935.1 mouse_genomes_project 12 122323940 122396322 + MGP_C3HHeJ_P0035882 Tmem196 protein_coding protein_coding MGP_C3HHeJ_T0035883.1 MGP_C3HHeJ_G0019935.1 mouse_genomes_project 12 122323952 122396670 + MGP_C3HHeJ_P0035883 Tmem196 protein_coding protein_coding MGP_C3HHeJ_T0034269.1 MGP_C3HHeJ_G0019381.1 mouse_genomes_project 12 22520766 22655189 + MGP_C3HHeJ_P0034269 Mboat2 protein_coding protein_coding MGP_C3HHeJ_T0034270.1 MGP_C3HHeJ_G0019381.1 mouse_genomes_project 12 22520766 22655189 + MGP_C3HHeJ_P0034270 Mboat2 protein_coding protein_coding MGP_C3HHeJ_T0098358.1 MGP_C3HHeJ_G0036567.1 mouse_genomes_project 12 55452992 55456930 + C87198 sense_intronic sense_intronic MGP_C3HHeJ_T0098359.1 MGP_C3HHeJ_G0036567.1 mouse_genomes_project 12 55453002 55456466 + C87198 sense_intronic sense_intronic MGP_C3HHeJ_T0034322.1 MGP_C3HHeJ_G0019405.1 mouse_genomes_project 12 29068937 29069492 + MGP_C3HHeJ_P0034322 6030469F06Rik protein_coding protein_coding MGP_C3HHeJ_T0035639.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110938817 110940035 + Dlk1 protein_coding retained_intron MGP_C3HHeJ_T0035640.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110938843 110950515 + MGP_C3HHeJ_P0035640 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035641.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110939707 110947879 + MGP_C3HHeJ_P0035641 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035642.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110939743 110947797 + MGP_C3HHeJ_P0035642 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035643.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110939743 110947560 + MGP_C3HHeJ_P0035643 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035644.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110939787 110950515 + MGP_C3HHeJ_P0035644 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035645.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110939907 110950515 + MGP_C3HHeJ_P0035645 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035646.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110939912 110947539 + MGP_C3HHeJ_P0035646 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035647.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110940448 110946941 + MGP_C3HHeJ_P0035647 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0035648.1 MGP_C3HHeJ_G0019856.1 mouse_genomes_project 12 110947021 110947654 + MGP_C3HHeJ_P0035648 Dlk1 protein_coding protein_coding MGP_C3HHeJ_T0012682.1 MGP_C3HHeJ_G0010786.1 mouse_genomes_project 12 56563983 56564421 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034273.1 MGP_C3HHeJ_G0019383.1 mouse_genomes_project 12 22803660 22805953 - MGP_C3HHeJ_P0034273 Id2 protein_coding protein_coding MGP_C3HHeJ_T0035520.1 MGP_C3HHeJ_G0019806.1 mouse_genomes_project 12 104912028 104923480 - MGP_C3HHeJ_P0035520 protein_coding protein_coding MGP_C3HHeJ_T0009760.1 MGP_C3HHeJ_G0007893.1 mouse_genomes_project 12 111113994 111114090 + Mir341 miRNA miRNA MGP_C3HHeJ_T0035535.1 MGP_C3HHeJ_G0019812.1 mouse_genomes_project 12 105260426 105271976 + MGP_C3HHeJ_P0035535 Serpina3b protein_coding protein_coding MGP_C3HHeJ_T0034150.1 MGP_C3HHeJ_G0019337.1 mouse_genomes_project 12 6055422 6072985 + MGP_C3HHeJ_P0034150 Laptm4a protein_coding protein_coding MGP_C3HHeJ_T0034952.1 MGP_C3HHeJ_G0019640.1 mouse_genomes_project 12 81088768 81258163 + MGP_C3HHeJ_P0034952 Smoc1 protein_coding protein_coding MGP_C3HHeJ_T0034953.1 MGP_C3HHeJ_G0019640.1 mouse_genomes_project 12 81088788 81258159 + MGP_C3HHeJ_P0034953 Smoc1 protein_coding protein_coding MGP_C3HHeJ_T0034954.1 MGP_C3HHeJ_G0019640.1 mouse_genomes_project 12 81088788 81258159 + MGP_C3HHeJ_P0034954 Smoc1 protein_coding protein_coding MGP_C3HHeJ_T0012667.1 MGP_C3HHeJ_G0010771.1 mouse_genomes_project 12 735093 735612 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035507.1 MGP_C3HHeJ_G0019798.1 mouse_genomes_project 12 104620124 104632905 - MGP_C3HHeJ_P0035507 Serpina10 protein_coding protein_coding MGP_C3HHeJ_T0035508.1 MGP_C3HHeJ_G0019798.1 mouse_genomes_project 12 104622873 104632882 - MGP_C3HHeJ_P0035508 Serpina10 protein_coding protein_coding MGP_C3HHeJ_T0012677.1 MGP_C3HHeJ_G0010781.1 mouse_genomes_project 12 53406756 53407134 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000233.1 MGP_C3HHeJ_G0000183.1 mouse_genomes_project 12 116147579 116147874 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0097849.1 MGP_C3HHeJ_G0036061.1 mouse_genomes_project 12 6588352 6588906 + pseudogene pseudogene MGP_C3HHeJ_T0034019.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 195660 281887 + MGP_C3HHeJ_P0034019 Asxl2 protein_coding protein_coding MGP_C3HHeJ_T0034020.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 195660 281892 + MGP_C3HHeJ_P0034020 Asxl2 protein_coding protein_coding MGP_C3HHeJ_T0034021.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 195687 270825 + MGP_C3HHeJ_P0034021 Asxl2 protein_coding protein_coding MGP_C3HHeJ_T0034022.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 195704 277498 + MGP_C3HHeJ_P0034022 Asxl2 protein_coding protein_coding MGP_C3HHeJ_T0034023.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 195715 227277 + Asxl2 protein_coding retained_intron MGP_C3HHeJ_T0034024.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 211899 270950 + MGP_C3HHeJ_P0034024 Asxl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034025.1 MGP_C3HHeJ_G0019305.1 mouse_genomes_project 12 268286 279787 + Asxl2 protein_coding processed_transcript MGP_C3HHeJ_T0009737.1 MGP_C3HHeJ_G0007870.1 mouse_genomes_project 12 107180751 107180821 - Gm22120 miRNA miRNA MGP_C3HHeJ_T0034691.1 MGP_C3HHeJ_G0019545.1 mouse_genomes_project 12 69340779 69386543 - MGP_C3HHeJ_P0034691 Cdkl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035453.1 MGP_C3HHeJ_G0019781.1 mouse_genomes_project 12 103696670 103698102 - MGP_C3HHeJ_P0035453 Moap1 protein_coding protein_coding MGP_C3HHeJ_T0035454.1 MGP_C3HHeJ_G0019781.1 mouse_genomes_project 12 103696670 103698086 - MGP_C3HHeJ_P0035454 Moap1 protein_coding protein_coding MGP_C3HHeJ_T0009781.1 MGP_C3HHeJ_G0007914.1 mouse_genomes_project 12 111226541 111226633 + Mir667 miRNA miRNA MGP_C3HHeJ_T0035564.1 MGP_C3HHeJ_G0019834.1 mouse_genomes_project 12 106901576 106903831 + MGP_C3HHeJ_P0035564 Bdkrb1 protein_coding protein_coding MGP_C3HHeJ_T0035565.1 MGP_C3HHeJ_G0019834.1 mouse_genomes_project 12 106901610 106903474 + MGP_C3HHeJ_P0035565 Bdkrb1 protein_coding protein_coding MGP_C3HHeJ_T0035566.1 MGP_C3HHeJ_G0019834.1 mouse_genomes_project 12 106902582 106903920 + MGP_C3HHeJ_P0035566 Bdkrb1 protein_coding protein_coding MGP_C3HHeJ_T0006326.1 MGP_C3HHeJ_G0005264.1 mouse_genomes_project 12 26310581 26314816 - 1700022F17Rik lincRNA lincRNA MGP_C3HHeJ_T0012726.1 MGP_C3HHeJ_G0010830.1 mouse_genomes_project 12 115182388 115182745 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035700.1 MGP_C3HHeJ_G0019872.1 mouse_genomes_project 12 112917620 112922922 + MGP_C3HHeJ_P0035700 Amn protein_coding protein_coding MGP_C3HHeJ_T0098829.1 MGP_C3HHeJ_G0037023.1 mouse_genomes_project 12 1602925 1603030 + Gm23676 snRNA snRNA MGP_C3HHeJ_T0034905.1 MGP_C3HHeJ_G0019620.1 mouse_genomes_project 12 79008264 79057857 + MGP_C3HHeJ_P0034905 Plekhh1 protein_coding protein_coding MGP_C3HHeJ_T0003323.1 MGP_C3HHeJ_G0003056.1 mouse_genomes_project 12 55396188 55469976 + Gm26973 antisense antisense MGP_C3HHeJ_T0003324.1 MGP_C3HHeJ_G0003056.1 mouse_genomes_project 12 55399060 55435380 + Gm26973 antisense antisense MGP_C3HHeJ_T0003325.1 MGP_C3HHeJ_G0003056.1 mouse_genomes_project 12 55399111 55470013 + Gm26973 antisense antisense MGP_C3HHeJ_T0034898.1 MGP_C3HHeJ_G0019615.1 mouse_genomes_project 12 78706491 78802421 + MGP_C3HHeJ_P0034898 Mpp5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100082.1 MGP_C3HHeJ_G0038276.1 mouse_genomes_project 12 55419231 55419363 + Gm25760 snoRNA snoRNA MGP_C3HHeJ_T0098009.1 MGP_C3HHeJ_G0036221.1 mouse_genomes_project 12 25881757 25881895 - Gm25923 rRNA rRNA MGP_C3HHeJ_T0034951.1 MGP_C3HHeJ_G0019639.1 mouse_genomes_project 12 81010424 81025223 - MGP_C3HHeJ_P0034951 Slc10a1 protein_coding protein_coding MGP_C3HHeJ_T0100103.1 MGP_C3HHeJ_G0038297.1 mouse_genomes_project 12 105590144 105590272 - Gm24334 snoRNA snoRNA MGP_C3HHeJ_T0098014.1 MGP_C3HHeJ_G0036226.1 mouse_genomes_project 12 54897327 54897447 - Gm23799 rRNA rRNA MGP_C3HHeJ_T0012698.1 MGP_C3HHeJ_G0010802.1 mouse_genomes_project 12 82611518 82611761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000825.1 MGP_C3HHeJ_G0000766.1 mouse_genomes_project 12 23295182 23338273 - TEC TEC MGP_C3HHeJ_T0100097.1 MGP_C3HHeJ_G0038291.1 mouse_genomes_project 12 82837129 82837265 - Gm22149 snoRNA snoRNA MGP_C3HHeJ_T0034182.1 MGP_C3HHeJ_G0019356.1 mouse_genomes_project 12 13230890 13256012 - MGP_C3HHeJ_P0034182 Trib2 protein_coding protein_coding MGP_C3HHeJ_T0034183.1 MGP_C3HHeJ_G0019356.1 mouse_genomes_project 12 13255110 13256104 - Trib2 protein_coding processed_transcript MGP_C3HHeJ_T0035751.1 MGP_C3HHeJ_G0019888.1 mouse_genomes_project 12 113648796 113654345 - MGP_C3HHeJ_P0035751 2010107E04Rik protein_coding protein_coding MGP_C3HHeJ_T0034237.1 MGP_C3HHeJ_G0019371.1 mouse_genomes_project 12 18861376 18890288 + MGP_C3HHeJ_P0034237 Cpsf3 protein_coding protein_coding MGP_C3HHeJ_T0035652.1 MGP_C3HHeJ_G0019859.1 mouse_genomes_project 12 111999241 112126717 + MGP_C3HHeJ_P0035652 Ppp2r5c protein_coding unknown_likely_coding MGP_C3HHeJ_T0035653.1 MGP_C3HHeJ_G0019859.1 mouse_genomes_project 12 112037613 112138076 + MGP_C3HHeJ_P0035653 Ppp2r5c protein_coding protein_coding MGP_C3HHeJ_T0035654.1 MGP_C3HHeJ_G0019859.1 mouse_genomes_project 12 112037613 112138076 + MGP_C3HHeJ_P0035654 Ppp2r5c protein_coding protein_coding MGP_C3HHeJ_T0009722.1 MGP_C3HHeJ_G0007855.1 mouse_genomes_project 12 85465427 85465490 - Mir6938 miRNA miRNA MGP_C3HHeJ_T0000119.1 MGP_C3HHeJ_G0000090.1 mouse_genomes_project 12 118031126 118031216 - MGP_C3HHeJ_P0000119 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034912.1 MGP_C3HHeJ_G0019624.1 mouse_genomes_project 12 79151122 79170060 - MGP_C3HHeJ_P0034912 Rdh11 protein_coding protein_coding MGP_C3HHeJ_T0034913.1 MGP_C3HHeJ_G0019624.1 mouse_genomes_project 12 79152336 79168728 - MGP_C3HHeJ_P0034913 Rdh11 protein_coding protein_coding MGP_C3HHeJ_T0034914.1 MGP_C3HHeJ_G0019624.1 mouse_genomes_project 12 79152950 79169560 - MGP_C3HHeJ_P0034914 Rdh11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012680.1 MGP_C3HHeJ_G0010784.1 mouse_genomes_project 12 56157000 56157466 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034635.1 MGP_C3HHeJ_G0019520.1 mouse_genomes_project 12 64364446 64387540 - MGP_C3HHeJ_P0034635 Klhl28 protein_coding protein_coding MGP_C3HHeJ_T0035411.1 MGP_C3HHeJ_G0019766.1 mouse_genomes_project 12 101901148 101945490 - MGP_C3HHeJ_P0035411 Smek1 protein_coding protein_coding MGP_C3HHeJ_T0035412.1 MGP_C3HHeJ_G0019766.1 mouse_genomes_project 12 101901148 101945490 - MGP_C3HHeJ_P0035412 Smek1 protein_coding protein_coding MGP_C3HHeJ_T0100107.1 MGP_C3HHeJ_G0038301.1 mouse_genomes_project 12 111140255 111140328 + AF357425 snoRNA snoRNA MGP_C3HHeJ_T0000224.1 MGP_C3HHeJ_G0000174.1 mouse_genomes_project 12 115778929 115779349 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0098858.1 MGP_C3HHeJ_G0037052.1 mouse_genomes_project 12 70314366 70314467 + Gm24474 snRNA snRNA MGP_C3HHeJ_T0035173.1 MGP_C3HHeJ_G0019701.1 mouse_genomes_project 12 85508395 85519163 + MGP_C3HHeJ_P0035173 Zc2hc1c protein_coding protein_coding MGP_C3HHeJ_T0098849.1 MGP_C3HHeJ_G0037043.1 mouse_genomes_project 12 58000166 58000341 + Gm22973 snRNA snRNA MGP_C3HHeJ_T0035174.1 MGP_C3HHeJ_G0019702.1 mouse_genomes_project 12 85519318 85561656 - MGP_C3HHeJ_P0035174 Nek9 protein_coding protein_coding MGP_C3HHeJ_T0034937.1 MGP_C3HHeJ_G0019636.1 mouse_genomes_project 12 80804458 80810954 - MGP_C3HHeJ_P0034937 Ccdc177 protein_coding protein_coding MGP_C3HHeJ_T0035413.1 MGP_C3HHeJ_G0019767.1 mouse_genomes_project 12 102276817 102523538 + MGP_C3HHeJ_P0035413 Catsperb protein_coding protein_coding MGP_C3HHeJ_T0098847.1 MGP_C3HHeJ_G0037041.1 mouse_genomes_project 12 53733227 53733332 + Gm24296 snRNA snRNA MGP_C3HHeJ_T0009713.1 MGP_C3HHeJ_G0007846.1 mouse_genomes_project 12 69135357 69135466 - Gm23018 miRNA miRNA MGP_C3HHeJ_T0003311.1 MGP_C3HHeJ_G0003046.1 mouse_genomes_project 12 170970 195815 - 1110002L01Rik antisense antisense MGP_C3HHeJ_T0003312.1 MGP_C3HHeJ_G0003046.1 mouse_genomes_project 12 171534 195518 - 1110002L01Rik antisense antisense MGP_C3HHeJ_T0003313.1 MGP_C3HHeJ_G0003046.1 mouse_genomes_project 12 172160 195551 - 1110002L01Rik antisense antisense MGP_C3HHeJ_T0017089.1 MGP_C3HHeJ_G0014998.1 mouse_genomes_project 12 102828058 102830154 + Gm20036 processed_transcript processed_transcript MGP_C3HHeJ_T0035604.1 MGP_C3HHeJ_G0019843.1 mouse_genomes_project 12 109618025 109640987 + MGP_C3HHeJ_P0035604 Ccnk protein_coding unknown_likely_coding MGP_C3HHeJ_T0035075.1 MGP_C3HHeJ_G0019673.1 mouse_genomes_project 12 84311316 84384151 - MGP_C3HHeJ_P0035075 Elmsan1 protein_coding protein_coding MGP_C3HHeJ_T0035076.1 MGP_C3HHeJ_G0019673.1 mouse_genomes_project 12 84311418 84358250 - MGP_C3HHeJ_P0035076 Elmsan1 protein_coding protein_coding MGP_C3HHeJ_T0035077.1 MGP_C3HHeJ_G0019673.1 mouse_genomes_project 12 84315085 84318051 - Elmsan1 protein_coding processed_transcript MGP_C3HHeJ_T0035078.1 MGP_C3HHeJ_G0019673.1 mouse_genomes_project 12 84319346 84322953 - Elmsan1 protein_coding processed_transcript MGP_C3HHeJ_T0012723.1 MGP_C3HHeJ_G0010827.1 mouse_genomes_project 12 109902946 109903704 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035856.1 MGP_C3HHeJ_G0019926.1 mouse_genomes_project 12 118758005 119040081 + Ptprn2 protein_coding processed_transcript MGP_C3HHeJ_T0035857.1 MGP_C3HHeJ_G0019926.1 mouse_genomes_project 12 118758014 119396818 + Ptprn2 protein_coding processed_transcript MGP_C3HHeJ_T0035858.1 MGP_C3HHeJ_G0019926.1 mouse_genomes_project 12 118758014 119554073 + MGP_C3HHeJ_P0035858 Ptprn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035859.1 MGP_C3HHeJ_G0019926.1 mouse_genomes_project 12 118758055 119116941 + Ptprn2 protein_coding retained_intron MGP_C3HHeJ_T0035860.1 MGP_C3HHeJ_G0019926.1 mouse_genomes_project 12 118758118 119554017 + MGP_C3HHeJ_P0035860 Ptprn2 protein_coding protein_coding MGP_C3HHeJ_T0017070.1 MGP_C3HHeJ_G0014987.1 mouse_genomes_project 12 18819554 18823360 - Gm20535 processed_transcript processed_transcript MGP_C3HHeJ_T0003351.1 MGP_C3HHeJ_G0003079.1 mouse_genomes_project 12 104291719 104293358 - Gm29508 antisense antisense MGP_C3HHeJ_T0003352.1 MGP_C3HHeJ_G0003079.1 mouse_genomes_project 12 104291720 104294122 - Gm29508 antisense antisense MGP_C3HHeJ_T0017082.1 MGP_C3HHeJ_G0014994.1 mouse_genomes_project 12 81613525 81641278 + 6530401F13Rik processed_transcript processed_transcript MGP_C3HHeJ_T0009806.1 MGP_C3HHeJ_G0007939.1 mouse_genomes_project 12 111249967 111250046 + Mir369 miRNA miRNA MGP_C3HHeJ_T0012679.1 MGP_C3HHeJ_G0010783.1 mouse_genomes_project 12 55225276 55225507 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000120.1 MGP_C3HHeJ_G0000091.1 mouse_genomes_project 12 118117973 118118267 - MGP_C3HHeJ_P0000120 Ighv1-78 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000121.1 MGP_C3HHeJ_G0000091.1 mouse_genomes_project 12 118117973 118118428 - MGP_C3HHeJ_P0000121 Ighv1-78 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000077.1 MGP_C3HHeJ_G0000061.1 mouse_genomes_project 12 116022461 116022900 - MGP_C3HHeJ_P0000077 Ighv3-3 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000078.1 MGP_C3HHeJ_G0000061.1 mouse_genomes_project 12 116022461 116022757 - MGP_C3HHeJ_P0000078 Ighv3-3 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035246.1 MGP_C3HHeJ_G0019721.1 mouse_genomes_project 12 87436844 87481475 - MGP_C3HHeJ_P0035246 Pomt2 protein_coding protein_coding MGP_C3HHeJ_T0035444.1 MGP_C3HHeJ_G0019776.1 mouse_genomes_project 12 103405609 103436795 + MGP_C3HHeJ_P0035444 Golga5 protein_coding protein_coding MGP_C3HHeJ_T0035445.1 MGP_C3HHeJ_G0019776.1 mouse_genomes_project 12 103406389 103436795 + MGP_C3HHeJ_P0035445 Golga5 protein_coding protein_coding MGP_C3HHeJ_T0000837.1 MGP_C3HHeJ_G0000778.1 mouse_genomes_project 12 103530404 103533223 - TEC TEC MGP_C3HHeJ_T0034907.1 MGP_C3HHeJ_G0019622.1 mouse_genomes_project 12 79104772 79130590 + MGP_C3HHeJ_P0034907 Arg2 protein_coding protein_coding MGP_C3HHeJ_T0035213.1 MGP_C3HHeJ_G0019713.1 mouse_genomes_project 12 86637914 86802496 + MGP_C3HHeJ_P0035213 Esrrb protein_coding protein_coding MGP_C3HHeJ_T0035214.1 MGP_C3HHeJ_G0019713.1 mouse_genomes_project 12 86699480 86802493 + MGP_C3HHeJ_P0035214 Esrrb protein_coding protein_coding MGP_C3HHeJ_T0035215.1 MGP_C3HHeJ_G0019713.1 mouse_genomes_project 12 86699480 86794911 + MGP_C3HHeJ_P0035215 Esrrb protein_coding protein_coding MGP_C3HHeJ_T0035216.1 MGP_C3HHeJ_G0019713.1 mouse_genomes_project 12 86699719 86800668 + MGP_C3HHeJ_P0035216 Esrrb protein_coding protein_coding MGP_C3HHeJ_T0035217.1 MGP_C3HHeJ_G0019713.1 mouse_genomes_project 12 86748854 86799933 + MGP_C3HHeJ_P0035217 Esrrb protein_coding protein_coding MGP_C3HHeJ_T0035218.1 MGP_C3HHeJ_G0019713.1 mouse_genomes_project 12 86783797 86789356 + Esrrb protein_coding processed_transcript MGP_C3HHeJ_T0034847.1 MGP_C3HHeJ_G0019595.1 mouse_genomes_project 12 75998176 76062805 - MGP_C3HHeJ_P0034847 Esr2 protein_coding protein_coding MGP_C3HHeJ_T0034848.1 MGP_C3HHeJ_G0019595.1 mouse_genomes_project 12 75998176 76051590 - MGP_C3HHeJ_P0034848 Esr2 protein_coding protein_coding MGP_C3HHeJ_T0034849.1 MGP_C3HHeJ_G0019595.1 mouse_genomes_project 12 75998176 76062805 - MGP_C3HHeJ_P0034849 Esr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034850.1 MGP_C3HHeJ_G0019595.1 mouse_genomes_project 12 75998196 76062805 - MGP_C3HHeJ_P0034850 Esr2 protein_coding protein_coding MGP_C3HHeJ_T0034446.1 MGP_C3HHeJ_G0019448.1 mouse_genomes_project 12 38266892 38340729 - MGP_C3HHeJ_P0034446 Scin protein_coding protein_coding MGP_C3HHeJ_T0034447.1 MGP_C3HHeJ_G0019448.1 mouse_genomes_project 12 38266896 38340774 - MGP_C3HHeJ_P0034447 Scin protein_coding protein_coding MGP_C3HHeJ_T0006330.1 MGP_C3HHeJ_G0005268.1 mouse_genomes_project 12 30766191 30771192 + Gdap10 lincRNA lincRNA MGP_C3HHeJ_T0035065.1 MGP_C3HHeJ_G0019669.1 mouse_genomes_project 12 84221977 84230476 + MGP_C3HHeJ_P0035065 Acot5 protein_coding protein_coding MGP_C3HHeJ_T0035701.1 MGP_C3HHeJ_G0019873.1 mouse_genomes_project 12 112939874 113026594 - MGP_C3HHeJ_P0035701 Cdc42bpb protein_coding protein_coding MGP_C3HHeJ_T0035593.1 MGP_C3HHeJ_G0019841.1 mouse_genomes_project 12 109346052 109441906 - MGP_C3HHeJ_P0035593 Bcl11b protein_coding protein_coding MGP_C3HHeJ_T0035594.1 MGP_C3HHeJ_G0019841.1 mouse_genomes_project 12 109350816 109441718 - MGP_C3HHeJ_P0035594 Bcl11b protein_coding protein_coding MGP_C3HHeJ_T0035595.1 MGP_C3HHeJ_G0019841.1 mouse_genomes_project 12 109350816 109441718 - MGP_C3HHeJ_P0035595 Bcl11b protein_coding protein_coding MGP_C3HHeJ_T0034876.1 MGP_C3HHeJ_G0019609.1 mouse_genomes_project 12 76701553 76726625 - MGP_C3HHeJ_P0034876 Rab15 protein_coding protein_coding MGP_C3HHeJ_T0034877.1 MGP_C3HHeJ_G0019609.1 mouse_genomes_project 12 76703472 76704433 - Rab15 protein_coding retained_intron MGP_C3HHeJ_T0034878.1 MGP_C3HHeJ_G0019609.1 mouse_genomes_project 12 76703720 76709080 - MGP_C3HHeJ_P0034878 Rab15 protein_coding protein_coding MGP_C3HHeJ_T0034879.1 MGP_C3HHeJ_G0019609.1 mouse_genomes_project 12 76703928 76727216 - MGP_C3HHeJ_P0034879 Rab15 protein_coding protein_coding MGP_C3HHeJ_T0034880.1 MGP_C3HHeJ_G0019609.1 mouse_genomes_project 12 76704164 76723366 - MGP_C3HHeJ_P0034880 Rab15 protein_coding protein_coding MGP_C3HHeJ_T0034881.1 MGP_C3HHeJ_G0019609.1 mouse_genomes_project 12 76706481 76726770 - Rab15 protein_coding retained_intron MGP_C3HHeJ_T0034563.1 MGP_C3HHeJ_G0019500.1 mouse_genomes_project 12 55473909 55475805 - MGP_C3HHeJ_P0034563 Nkx2-9 protein_coding protein_coding MGP_C3HHeJ_T0100122.1 MGP_C3HHeJ_G0038316.1 mouse_genomes_project 12 111187632 111187719 + Gm22981 snoRNA snoRNA MGP_C3HHeJ_T0034827.1 MGP_C3HHeJ_G0019592.1 mouse_genomes_project 12 75486719 75527893 - MGP_C3HHeJ_P0034827 Wdr89 protein_coding protein_coding MGP_C3HHeJ_T0034828.1 MGP_C3HHeJ_G0019592.1 mouse_genomes_project 12 75487644 75527883 - MGP_C3HHeJ_P0034828 Wdr89 protein_coding protein_coding MGP_C3HHeJ_T0000108.1 MGP_C3HHeJ_G0000083.1 mouse_genomes_project 12 116483949 116484382 - MGP_C3HHeJ_P0000108 Ighv1-11 IG_V_gene IG_V_gene MGP_C3HHeJ_T0009710.1 MGP_C3HHeJ_G0007843.1 mouse_genomes_project 12 68721284 68721354 + miRNA miRNA MGP_C3HHeJ_T0009756.1 MGP_C3HHeJ_G0007889.1 mouse_genomes_project 12 111096649 111096791 + Mir434 miRNA miRNA MGP_C3HHeJ_T0035020.1 MGP_C3HHeJ_G0019656.1 mouse_genomes_project 12 83630431 83652910 + MGP_C3HHeJ_P0035020 Dcaf4 protein_coding protein_coding MGP_C3HHeJ_T0035825.1 MGP_C3HHeJ_G0019916.1 mouse_genomes_project 12 114917655 114925201 + Crip1 protein_coding processed_transcript MGP_C3HHeJ_T0035826.1 MGP_C3HHeJ_G0019916.1 mouse_genomes_project 12 114920052 114925168 + MGP_C3HHeJ_P0035826 Crip1 protein_coding protein_coding MGP_C3HHeJ_T0035827.1 MGP_C3HHeJ_G0019916.1 mouse_genomes_project 12 114923348 114925199 + MGP_C3HHeJ_P0035827 Crip1 protein_coding protein_coding MGP_C3HHeJ_T0035828.1 MGP_C3HHeJ_G0019916.1 mouse_genomes_project 12 114923389 114925201 + MGP_C3HHeJ_P0035828 Crip1 protein_coding protein_coding MGP_C3HHeJ_T0035829.1 MGP_C3HHeJ_G0019916.1 mouse_genomes_project 12 114923407 114925201 + Crip1 protein_coding retained_intron MGP_C3HHeJ_T0035830.1 MGP_C3HHeJ_G0019916.1 mouse_genomes_project 12 114923417 114925201 + Crip1 protein_coding retained_intron MGP_C3HHeJ_T0101683.1 MGP_C3HHeJ_G0039648.1 mouse_genomes_project 12 105306829 105311823 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009763.1 MGP_C3HHeJ_G0007896.1 mouse_genomes_project 12 111121883 111121962 + Mir370 miRNA miRNA MGP_C3HHeJ_T0006355.1 MGP_C3HHeJ_G0005287.1 mouse_genomes_project 12 80944950 80947091 - Gm26545 lincRNA lincRNA MGP_C3HHeJ_T0035861.1 MGP_C3HHeJ_G0019927.1 mouse_genomes_project 12 119805918 120055450 + MGP_C3HHeJ_P0035861 Rapgef5 protein_coding protein_coding MGP_C3HHeJ_T0035862.1 MGP_C3HHeJ_G0019927.1 mouse_genomes_project 12 119824315 120058213 + MGP_C3HHeJ_P0035862 Rapgef5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034723.1 MGP_C3HHeJ_G0019554.1 mouse_genomes_project 12 70099018 70114030 + MGP_C3HHeJ_P0034723 Tmx1 protein_coding protein_coding MGP_C3HHeJ_T0034724.1 MGP_C3HHeJ_G0019554.1 mouse_genomes_project 12 70101947 70112243 + MGP_C3HHeJ_P0034724 Tmx1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034725.1 MGP_C3HHeJ_G0019554.1 mouse_genomes_project 12 70105745 70106481 + Tmx1 protein_coding retained_intron MGP_C3HHeJ_T0035530.1 MGP_C3HHeJ_G0019809.1 mouse_genomes_project 12 105155706 105171363 - MGP_C3HHeJ_P0035530 Serpina12 protein_coding protein_coding MGP_C3HHeJ_T0009766.1 MGP_C3HHeJ_G0007899.1 mouse_genomes_project 12 111216735 111216817 + Mir411 miRNA miRNA MGP_C3HHeJ_T0003327.1 MGP_C3HHeJ_G0003058.1 mouse_genomes_project 12 56350444 56362107 - Gm16246 antisense antisense MGP_C3HHeJ_T0034497.1 MGP_C3HHeJ_G0019466.1 mouse_genomes_project 12 49954750 50029108 + MGP_C3HHeJ_P0034497 Scfd1 protein_coding protein_coding MGP_C3HHeJ_T0035695.1 MGP_C3HHeJ_G0019871.1 mouse_genomes_project 12 112777315 112885919 + MGP_C3HHeJ_P0035695 Traf3 protein_coding protein_coding MGP_C3HHeJ_T0035696.1 MGP_C3HHeJ_G0019871.1 mouse_genomes_project 12 112866660 112913658 + MGP_C3HHeJ_P0035696 Traf3 protein_coding protein_coding MGP_C3HHeJ_T0035697.1 MGP_C3HHeJ_G0019871.1 mouse_genomes_project 12 112866660 112913654 + MGP_C3HHeJ_P0035697 Traf3 protein_coding protein_coding MGP_C3HHeJ_T0035698.1 MGP_C3HHeJ_G0019871.1 mouse_genomes_project 12 112884403 112913663 + MGP_C3HHeJ_P0035698 Traf3 protein_coding protein_coding MGP_C3HHeJ_T0035699.1 MGP_C3HHeJ_G0019871.1 mouse_genomes_project 12 112895214 112909070 + Traf3 protein_coding retained_intron MGP_C3HHeJ_T0006352.1 MGP_C3HHeJ_G0005284.1 mouse_genomes_project 12 80137847 80150151 - 2310015A10Rik lincRNA lincRNA MGP_C3HHeJ_T0100095.1 MGP_C3HHeJ_G0038289.1 mouse_genomes_project 12 81583000 81583121 + Gm24853 snoRNA snoRNA MGP_C3HHeJ_T0034519.1 MGP_C3HHeJ_G0019479.1 mouse_genomes_project 12 53340726 53351916 - MGP_C3HHeJ_P0034519 Sptssa protein_coding protein_coding MGP_C3HHeJ_T0006353.1 MGP_C3HHeJ_G0005285.1 mouse_genomes_project 12 80545457 80555992 - Gm26777 lincRNA lincRNA MGP_C3HHeJ_T0034599.1 MGP_C3HHeJ_G0019512.1 mouse_genomes_project 12 58034625 58041723 + MGP_C3HHeJ_P0034599 Pnn protein_coding protein_coding MGP_C3HHeJ_T0011242.1 MGP_C3HHeJ_G0009375.1 mouse_genomes_project 12 104101323 104101485 + Gm27976 misc_RNA misc_RNA MGP_C3HHeJ_T0000075.1 MGP_C3HHeJ_G0000060.1 mouse_genomes_project 12 115991956 115992386 - MGP_C3HHeJ_P0000075 Ighv14-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000076.1 MGP_C3HHeJ_G0000060.1 mouse_genomes_project 12 115991962 115992381 - MGP_C3HHeJ_P0000076 Ighv14-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0035460.1 MGP_C3HHeJ_G0019786.1 mouse_genomes_project 12 103853849 103855078 + MGP_C3HHeJ_P0035460 Cox8c protein_coding protein_coding MGP_C3HHeJ_T0034093.1 MGP_C3HHeJ_G0019318.1 mouse_genomes_project 12 1542172 1542697 - MGP_C3HHeJ_P0034093 Gm17541 protein_coding protein_coding MGP_C3HHeJ_T0098360.1 MGP_C3HHeJ_G0036568.1 mouse_genomes_project 12 85126634 85127605 - Gm17193 sense_intronic sense_intronic MGP_C3HHeJ_T0011241.1 MGP_C3HHeJ_G0009374.1 mouse_genomes_project 12 96952037 96952334 - Gm26480 misc_RNA misc_RNA MGP_C3HHeJ_T0034122.1 MGP_C3HHeJ_G0019330.1 mouse_genomes_project 12 5216016 5306482 + MGP_C3HHeJ_P0034122 Ldah protein_coding protein_coding MGP_C3HHeJ_T0035721.1 MGP_C3HHeJ_G0019881.1 mouse_genomes_project 12 113339742 113347358 + MGP_C3HHeJ_P0035721 Trmt61a protein_coding protein_coding MGP_C3HHeJ_T0035722.1 MGP_C3HHeJ_G0019881.1 mouse_genomes_project 12 113339742 113347358 + MGP_C3HHeJ_P0035722 Trmt61a protein_coding protein_coding MGP_C3HHeJ_T0035855.1 MGP_C3HHeJ_G0019925.1 mouse_genomes_project 12 118667628 118735888 + MGP_C3HHeJ_P0035855 Ncapg2 protein_coding protein_coding MGP_C3HHeJ_T0000832.1 MGP_C3HHeJ_G0000773.1 mouse_genomes_project 12 83198845 83199647 - TEC TEC MGP_C3HHeJ_T0034091.1 MGP_C3HHeJ_G0019317.1 mouse_genomes_project 12 1441227 1565287 + MGP_C3HHeJ_P0034091 Itsn2 protein_coding protein_coding MGP_C3HHeJ_T0034092.1 MGP_C3HHeJ_G0019317.1 mouse_genomes_project 12 1461497 1528026 + MGP_C3HHeJ_P0034092 Itsn2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100071.1 MGP_C3HHeJ_G0038265.1 mouse_genomes_project 12 32924109 32924241 + Gm24429 snoRNA snoRNA MGP_C3HHeJ_T0035227.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268555 87284410 + MGP_C3HHeJ_P0035227 Cipc protein_coding protein_coding MGP_C3HHeJ_T0035228.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268555 87285550 + MGP_C3HHeJ_P0035228 Cipc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035229.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268611 87283710 + MGP_C3HHeJ_P0035229 Cipc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035230.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268855 87287105 + MGP_C3HHeJ_P0035230 Cipc protein_coding protein_coding MGP_C3HHeJ_T0035231.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268908 87274678 + Cipc protein_coding retained_intron MGP_C3HHeJ_T0035232.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268930 87281904 + MGP_C3HHeJ_P0035232 Cipc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035233.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268966 87281903 + MGP_C3HHeJ_P0035233 Cipc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035234.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87268978 87281820 + MGP_C3HHeJ_P0035234 Cipc protein_coding protein_coding MGP_C3HHeJ_T0035235.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87269002 87283626 + MGP_C3HHeJ_P0035235 Cipc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035236.1 MGP_C3HHeJ_G0019717.1 mouse_genomes_project 12 87274169 87284576 + MGP_C3HHeJ_P0035236 Cipc protein_coding protein_coding MGP_C3HHeJ_T0034632.1 MGP_C3HHeJ_G0019517.1 mouse_genomes_project 12 62049808 62050231 + MGP_C3HHeJ_P0034632 Spanxn4 protein_coding protein_coding MGP_C3HHeJ_T0006372.1 MGP_C3HHeJ_G0005304.1 mouse_genomes_project 12 101944268 101951381 + D130020L05Rik lincRNA lincRNA MGP_C3HHeJ_T0035791.1 MGP_C3HHeJ_G0019903.1 mouse_genomes_project 12 114509034 114537770 - MGP_C3HHeJ_P0035791 Ahnak2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035792.1 MGP_C3HHeJ_G0019903.1 mouse_genomes_project 12 114509034 114537770 - MGP_C3HHeJ_P0035792 Ahnak2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035793.1 MGP_C3HHeJ_G0019903.1 mouse_genomes_project 12 114509041 114514916 - MGP_C3HHeJ_P0035793 Ahnak2 protein_coding protein_coding MGP_C3HHeJ_T0035794.1 MGP_C3HHeJ_G0019903.1 mouse_genomes_project 12 114509281 114512102 - MGP_C3HHeJ_P0035794 Ahnak2 protein_coding protein_coding MGP_C3HHeJ_T0034750.1 MGP_C3HHeJ_G0019564.1 mouse_genomes_project 12 71753048 71766689 - MGP_C3HHeJ_P0034750 L3hypdh protein_coding protein_coding MGP_C3HHeJ_T0034751.1 MGP_C3HHeJ_G0019564.1 mouse_genomes_project 12 71756116 71766689 - L3hypdh protein_coding retained_intron MGP_C3HHeJ_T0034752.1 MGP_C3HHeJ_G0019564.1 mouse_genomes_project 12 71756884 71766268 - L3hypdh protein_coding processed_transcript MGP_C3HHeJ_T0035799.1 MGP_C3HHeJ_G0019907.1 mouse_genomes_project 12 114662938 114683214 - MGP_C3HHeJ_P0035799 Jag2 protein_coding protein_coding MGP_C3HHeJ_T0003320.1 MGP_C3HHeJ_G0003053.1 mouse_genomes_project 12 38410300 38412750 + Gm17056 antisense antisense MGP_C3HHeJ_T0101677.1 MGP_C3HHeJ_G0039642.1 mouse_genomes_project 12 104885464 105014170 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0034778.1 MGP_C3HHeJ_G0019572.1 mouse_genomes_project 12 72456666 72494578 + MGP_C3HHeJ_P0034778 Ppm1a protein_coding protein_coding MGP_C3HHeJ_T0100074.1 MGP_C3HHeJ_G0038268.1 mouse_genomes_project 12 37800574 37800706 + Gm24434 snoRNA snoRNA MGP_C3HHeJ_T0011236.1 MGP_C3HHeJ_G0009369.1 mouse_genomes_project 12 71388847 71389149 + Gm22959 misc_RNA misc_RNA MGP_C3HHeJ_T0009734.1 MGP_C3HHeJ_G0007867.1 mouse_genomes_project 12 103635449 103635542 - Mir1936 miRNA miRNA MGP_C3HHeJ_T0035768.1 MGP_C3HHeJ_G0019893.1 mouse_genomes_project 12 114121511 114132385 - MGP_C3HHeJ_P0035768 A730018C14Rik protein_coding protein_coding MGP_C3HHeJ_T0012718.1 MGP_C3HHeJ_G0010822.1 mouse_genomes_project 12 107883882 107885551 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034602.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58110439 58173038 + MGP_C3HHeJ_P0034602 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034603.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58110465 58173035 + MGP_C3HHeJ_P0034603 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034604.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58110482 58173038 + MGP_C3HHeJ_P0034604 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034605.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58110484 58130148 + MGP_C3HHeJ_P0034605 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034606.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58110504 58173084 + MGP_C3HHeJ_P0034606 Ctage5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034607.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58110529 58150698 + MGP_C3HHeJ_P0034607 Ctage5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034608.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58111096 58172812 + MGP_C3HHeJ_P0034608 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034609.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58111556 58173084 + MGP_C3HHeJ_P0034609 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034610.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58111741 58127471 + MGP_C3HHeJ_P0034610 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034611.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58112005 58176831 + MGP_C3HHeJ_P0034611 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034612.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58112172 58173035 + MGP_C3HHeJ_P0034612 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034613.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58112186 58172814 + MGP_C3HHeJ_P0034613 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034614.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58112200 58125574 + Ctage5 protein_coding retained_intron MGP_C3HHeJ_T0034615.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58112221 58173084 + MGP_C3HHeJ_P0034615 Ctage5 protein_coding protein_coding MGP_C3HHeJ_T0034616.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58116817 58172814 + MGP_C3HHeJ_P0034616 Ctage5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034617.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58130120 58172814 + MGP_C3HHeJ_P0034617 Ctage5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034618.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58143575 58166033 + MGP_C3HHeJ_P0034618 Ctage5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034619.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58148541 58157256 + Ctage5 protein_coding retained_intron MGP_C3HHeJ_T0034620.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58150611 58172502 + Ctage5 protein_coding retained_intron MGP_C3HHeJ_T0034621.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58150740 58152806 + Ctage5 protein_coding retained_intron MGP_C3HHeJ_T0034622.1 MGP_C3HHeJ_G0019514.1 mouse_genomes_project 12 58161249 58171381 + Ctage5 protein_coding retained_intron MGP_C3HHeJ_T0098013.1 MGP_C3HHeJ_G0036225.1 mouse_genomes_project 12 53368593 53368703 - Gm24971 rRNA rRNA MGP_C3HHeJ_T0000100.1 MGP_C3HHeJ_G0000078.1 mouse_genomes_project 12 116372416 116372894 - MGP_C3HHeJ_P0000100 Ighv1-5 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000101.1 MGP_C3HHeJ_G0000078.1 mouse_genomes_project 12 116372416 116372710 - MGP_C3HHeJ_P0000101 Ighv1-5 IG_V_gene IG_V_gene MGP_C3HHeJ_T0009744.1 MGP_C3HHeJ_G0007877.1 mouse_genomes_project 12 111065206 111065300 + Mir770 miRNA miRNA MGP_C3HHeJ_T0000223.1 MGP_C3HHeJ_G0000173.1 mouse_genomes_project 12 115777350 115777794 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0003346.1 MGP_C3HHeJ_G0003075.1 mouse_genomes_project 12 92330856 92339763 + Gm16876 antisense antisense MGP_C3HHeJ_T0034538.1 MGP_C3HHeJ_G0019486.1 mouse_genomes_project 12 53827079 53861826 + MGP_C3HHeJ_P0034538 protein_coding protein_coding MGP_C3HHeJ_T0034539.1 MGP_C3HHeJ_G0019486.1 mouse_genomes_project 12 53827079 53862286 + MGP_C3HHeJ_P0034539 protein_coding protein_coding MGP_C3HHeJ_T0098571.1 MGP_C3HHeJ_G0036769.1 mouse_genomes_project 12 72651883 72672416 + Gm26709 sense_overlapping sense_overlapping MGP_C3HHeJ_T0035664.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112254775 112261317 - MGP_C3HHeJ_P0035664 Hsp90aa1 protein_coding protein_coding MGP_C3HHeJ_T0035665.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112257631 112258102 - Hsp90aa1 protein_coding retained_intron MGP_C3HHeJ_T0035666.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112258581 112259214 - Hsp90aa1 protein_coding retained_intron MGP_C3HHeJ_T0035667.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112259096 112260594 - Hsp90aa1 protein_coding retained_intron MGP_C3HHeJ_T0035668.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112259550 112267624 - MGP_C3HHeJ_P0035668 Hsp90aa1 protein_coding protein_coding MGP_C3HHeJ_T0035669.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112260191 112261180 - MGP_C3HHeJ_P0035669 Hsp90aa1 protein_coding protein_coding MGP_C3HHeJ_T0035670.1 MGP_C3HHeJ_G0019862.1 mouse_genomes_project 12 112260207 112260873 - MGP_C3HHeJ_P0035670 Hsp90aa1 protein_coding protein_coding MGP_C3HHeJ_T0006310.1 MGP_C3HHeJ_G0005252.1 mouse_genomes_project 12 110235 123507 - Gm26520 lincRNA lincRNA MGP_C3HHeJ_T0000256.1 MGP_C3HHeJ_G0000206.1 mouse_genomes_project 12 118226813 118237367 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034094.1 MGP_C3HHeJ_G0019319.1 mouse_genomes_project 12 1565153 1591028 - MGP_C3HHeJ_P0034094 Fam228a protein_coding protein_coding MGP_C3HHeJ_T0034095.1 MGP_C3HHeJ_G0019319.1 mouse_genomes_project 12 1566887 1590920 - MGP_C3HHeJ_P0034095 Fam228a protein_coding unknown_likely_coding MGP_C3HHeJ_T0034281.1 MGP_C3HHeJ_G0019388.1 mouse_genomes_project 12 26349967 26356462 - protein_coding processed_transcript MGP_C3HHeJ_T0034282.1 MGP_C3HHeJ_G0019388.1 mouse_genomes_project 12 26355803 26364362 - protein_coding processed_transcript MGP_C3HHeJ_T0034283.1 MGP_C3HHeJ_G0019388.1 mouse_genomes_project 12 26356031 26391018 - MGP_C3HHeJ_P0034283 protein_coding protein_coding MGP_C3HHeJ_T0006408.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111236308 111256486 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006409.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111236309 111237386 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006410.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111236820 111256486 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006411.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111237503 111256488 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006412.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111241534 111250283 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006413.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111241534 111256486 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006414.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111241538 111255201 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006415.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111244251 111246611 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006416.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111244329 111248053 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006417.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111250350 111256486 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006418.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111254920 111256483 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0006419.1 MGP_C3HHeJ_G0005326.1 mouse_genomes_project 12 111254981 111256486 + Mirg lincRNA lincRNA MGP_C3HHeJ_T0000255.1 MGP_C3HHeJ_G0000205.1 mouse_genomes_project 12 118205862 118206295 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034209.1 MGP_C3HHeJ_G0019363.1 mouse_genomes_project 12 14475438 14484988 - MGP_C3HHeJ_P0034209 2410004P03Rik protein_coding protein_coding MGP_C3HHeJ_T0034210.1 MGP_C3HHeJ_G0019363.1 mouse_genomes_project 12 14477709 14484815 - MGP_C3HHeJ_P0034210 2410004P03Rik protein_coding protein_coding MGP_C3HHeJ_T0034211.1 MGP_C3HHeJ_G0019363.1 mouse_genomes_project 12 14479258 14484764 - MGP_C3HHeJ_P0034211 2410004P03Rik protein_coding protein_coding MGP_C3HHeJ_T0098862.1 MGP_C3HHeJ_G0037056.1 mouse_genomes_project 12 78710290 78710392 - Gm25225 snRNA snRNA MGP_C3HHeJ_T0034151.1 MGP_C3HHeJ_G0019338.1 mouse_genomes_project 12 6082158 6107821 + MGP_C3HHeJ_P0034151 Matn3 protein_coding protein_coding MGP_C3HHeJ_T0000032.1 MGP_C3HHeJ_G0000026.1 mouse_genomes_project 12 115215681 115215729 - MGP_C3HHeJ_P0000032 Ighj3 IG_J_gene IG_J_gene MGP_C3HHeJ_T0035806.1 MGP_C3HHeJ_G0019912.1 mouse_genomes_project 12 114781923 114840933 + MGP_C3HHeJ_P0035806 Pacs2 protein_coding protein_coding MGP_C3HHeJ_T0000084.1 MGP_C3HHeJ_G0000065.1 mouse_genomes_project 12 116103809 116104240 - MGP_C3HHeJ_P0000084 Ighv3-6 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000085.1 MGP_C3HHeJ_G0000065.1 mouse_genomes_project 12 116103814 116104240 - MGP_C3HHeJ_P0000085 Ighv3-6 IG_V_gene IG_V_gene MGP_C3HHeJ_T0100065.1 MGP_C3HHeJ_G0038259.1 mouse_genomes_project 12 22469515 22469644 + Gm26211 snoRNA snoRNA MGP_C3HHeJ_T0034348.1 MGP_C3HHeJ_G0019414.1 mouse_genomes_project 12 29620875 29627936 - MGP_C3HHeJ_P0034348 Gpr22 protein_coding protein_coding MGP_C3HHeJ_T0034349.1 MGP_C3HHeJ_G0019414.1 mouse_genomes_project 12 29622720 29627957 - MGP_C3HHeJ_P0034349 Gpr22 protein_coding protein_coding MGP_C3HHeJ_T0034350.1 MGP_C3HHeJ_G0019414.1 mouse_genomes_project 12 29623457 29627943 - MGP_C3HHeJ_P0034350 Gpr22 protein_coding protein_coding MGP_C3HHeJ_T0009704.1 MGP_C3HHeJ_G0007837.1 mouse_genomes_project 12 35143524 35143625 - Gm44326 miRNA miRNA MGP_C3HHeJ_T0011228.1 MGP_C3HHeJ_G0009361.1 mouse_genomes_project 12 30295402 30295720 - Gm23875 misc_RNA misc_RNA MGP_C3HHeJ_T0035249.1 MGP_C3HHeJ_G0019723.1 mouse_genomes_project 12 87502453 87538078 - MGP_C3HHeJ_P0035249 Tmed8 protein_coding protein_coding MGP_C3HHeJ_T0034374.1 MGP_C3HHeJ_G0019421.1 mouse_genomes_project 12 30983063 31056937 - MGP_C3HHeJ_P0034374 Cdhr3 protein_coding protein_coding MGP_C3HHeJ_T0035430.1 MGP_C3HHeJ_G0019772.1 mouse_genomes_project 12 102894255 102926787 + MGP_C3HHeJ_P0035430 Cpsf2 protein_coding protein_coding MGP_C3HHeJ_T0000012.1 MGP_C3HHeJ_G0000009.1 mouse_genomes_project 12 115193620 115203258 - MGP_C3HHeJ_P0000012 Ighd IG_C_gene IG_C_gene MGP_C3HHeJ_T0000013.1 MGP_C3HHeJ_G0000009.1 mouse_genomes_project 12 115196572 115203258 - MGP_C3HHeJ_P0000013 Ighd IG_C_gene IG_C_gene MGP_C3HHeJ_T0035838.1 MGP_C3HHeJ_G0000009.1 mouse_genomes_project 12 115194547 115203238 - MGP_C3HHeJ_P0035838 Ighd IG_C_gene unknown_likely_coding MGP_C3HHeJ_T0035839.1 MGP_C3HHeJ_G0000009.1 mouse_genomes_project 12 115194547 115203097 - MGP_C3HHeJ_P0035839 Ighd IG_C_gene unknown_likely_coding MGP_C3HHeJ_T0012694.1 MGP_C3HHeJ_G0010798.1 mouse_genomes_project 12 79142806 79143154 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003340.1 MGP_C3HHeJ_G0003069.1 mouse_genomes_project 12 83000349 83006984 - 1700085C21Rik antisense antisense MGP_C3HHeJ_T0034168.1 MGP_C3HHeJ_G0019345.1 mouse_genomes_project 12 8423138 8423705 - MGP_C3HHeJ_P0034168 Msgn1 protein_coding protein_coding MGP_C3HHeJ_T0006365.1 MGP_C3HHeJ_G0005297.1 mouse_genomes_project 12 91412609 91425611 + Gm26512 lincRNA lincRNA MGP_C3HHeJ_T0034176.1 MGP_C3HHeJ_G0019352.1 mouse_genomes_project 12 10267750 10273572 - MGP_C3HHeJ_P0034176 Mycn protein_coding protein_coding MGP_C3HHeJ_T0034177.1 MGP_C3HHeJ_G0019352.1 mouse_genomes_project 12 10267750 10272276 - MGP_C3HHeJ_P0034177 Mycn protein_coding protein_coding MGP_C3HHeJ_T0034178.1 MGP_C3HHeJ_G0019352.1 mouse_genomes_project 12 10272603 10273483 - Mycn protein_coding processed_transcript MGP_C3HHeJ_T0098019.1 MGP_C3HHeJ_G0036231.1 mouse_genomes_project 12 85959609 85959728 - n-R5s64 rRNA rRNA MGP_C3HHeJ_T0009765.1 MGP_C3HHeJ_G0007898.1 mouse_genomes_project 12 111215621 111215687 + Mir379 miRNA miRNA MGP_C3HHeJ_T0000126.1 MGP_C3HHeJ_G0000096.1 mouse_genomes_project 12 118236934 118237335 - MGP_C3HHeJ_P0000126 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034541.1 MGP_C3HHeJ_G0019488.1 mouse_genomes_project 12 53877628 54067764 + MGP_C3HHeJ_P0034541 protein_coding protein_coding MGP_C3HHeJ_T0098860.1 MGP_C3HHeJ_G0037054.1 mouse_genomes_project 12 77334232 77334331 + Gm24775 snRNA snRNA MGP_C3HHeJ_T0034982.1 MGP_C3HHeJ_G0019648.1 mouse_genomes_project 12 81657231 81677771 - MGP_C3HHeJ_P0034982 Med6 protein_coding protein_coding MGP_C3HHeJ_T0034983.1 MGP_C3HHeJ_G0019648.1 mouse_genomes_project 12 81657368 81658419 - Med6 protein_coding retained_intron MGP_C3HHeJ_T0034984.1 MGP_C3HHeJ_G0019648.1 mouse_genomes_project 12 81665294 81677761 - Med6 protein_coding retained_intron MGP_C3HHeJ_T0009742.1 MGP_C3HHeJ_G0007875.1 mouse_genomes_project 12 110808204 110808271 - Gm25297 miRNA miRNA MGP_C3HHeJ_T0035537.1 MGP_C3HHeJ_G0019814.1 mouse_genomes_project 12 105374993 105381582 + MGP_C3HHeJ_P0035537 protein_coding protein_coding MGP_C3HHeJ_T0100088.1 MGP_C3HHeJ_G0038282.1 mouse_genomes_project 12 64824300 64824425 - Gm26015 snoRNA snoRNA MGP_C3HHeJ_T0034668.1 MGP_C3HHeJ_G0019534.1 mouse_genomes_project 12 68760013 68762671 + MGP_C3HHeJ_P0034668 9330151L19Rik protein_coding protein_coding MGP_C3HHeJ_T0035538.1 MGP_C3HHeJ_G0019815.1 mouse_genomes_project 12 105407267 105413284 + MGP_C3HHeJ_P0035538 protein_coding protein_coding MGP_C3HHeJ_T0098873.1 MGP_C3HHeJ_G0037067.1 mouse_genomes_project 12 118750553 118750617 - Gm27649 snRNA snRNA MGP_C3HHeJ_T0100101.1 MGP_C3HHeJ_G0038295.1 mouse_genomes_project 12 103184993 103185209 - Gm25203 snoRNA snoRNA MGP_C3HHeJ_T0034502.1 MGP_C3HHeJ_G0019469.1 mouse_genomes_project 12 50283421 50333496 + MGP_C3HHeJ_P0034502 Ap4s1 protein_coding protein_coding MGP_C3HHeJ_T0006335.1 MGP_C3HHeJ_G0005272.1 mouse_genomes_project 12 47887591 47904827 + 3110039M20Rik lincRNA lincRNA MGP_C3HHeJ_T0006336.1 MGP_C3HHeJ_G0005272.1 mouse_genomes_project 12 47888598 47904605 + 3110039M20Rik lincRNA lincRNA MGP_C3HHeJ_T0034509.1 MGP_C3HHeJ_G0019473.1 mouse_genomes_project 12 50632653 50637918 - MGP_C3HHeJ_P0034509 Gpr33 protein_coding protein_coding MGP_C3HHeJ_T0035681.1 MGP_C3HHeJ_G0019865.1 mouse_genomes_project 12 112431766 112453667 + MGP_C3HHeJ_P0035681 Zfp839 protein_coding protein_coding MGP_C3HHeJ_T0035682.1 MGP_C3HHeJ_G0019865.1 mouse_genomes_project 12 112431805 112452757 + MGP_C3HHeJ_P0035682 Zfp839 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009809.1 MGP_C3HHeJ_G0007942.1 mouse_genomes_project 12 111818589 111818671 - Mir1247 miRNA miRNA MGP_C3HHeJ_T0034250.1 MGP_C3HHeJ_G0019375.1 mouse_genomes_project 12 22149802 22150253 - MGP_C3HHeJ_P0034250 Gm16372 protein_coding protein_coding MGP_C3HHeJ_T0098835.1 MGP_C3HHeJ_G0037029.1 mouse_genomes_project 12 12306437 12306541 + Gm26449 snRNA snRNA MGP_C3HHeJ_T0011243.1 MGP_C3HHeJ_G0009376.1 mouse_genomes_project 12 111030455 111030660 + Gm27528 misc_RNA misc_RNA MGP_C3HHeJ_T0000824.1 MGP_C3HHeJ_G0000765.1 mouse_genomes_project 12 9881644 9882177 + TEC TEC MGP_C3HHeJ_T0034623.1 MGP_C3HHeJ_G0019515.1 mouse_genomes_project 12 58189635 58209047 - MGP_C3HHeJ_P0034623 Fbxo33 protein_coding protein_coding MGP_C3HHeJ_T0034624.1 MGP_C3HHeJ_G0019515.1 mouse_genomes_project 12 58189637 58193418 - MGP_C3HHeJ_P0034624 Fbxo33 protein_coding protein_coding MGP_C3HHeJ_T0034625.1 MGP_C3HHeJ_G0019515.1 mouse_genomes_project 12 58189638 58194671 - Fbxo33 protein_coding retained_intron MGP_C3HHeJ_T0034626.1 MGP_C3HHeJ_G0019515.1 mouse_genomes_project 12 58193533 58208123 - MGP_C3HHeJ_P0034626 Fbxo33 protein_coding protein_coding MGP_C3HHeJ_T0035803.1 MGP_C3HHeJ_G0019910.1 mouse_genomes_project 12 114732619 114735068 + MGP_C3HHeJ_P0035803 Btbd6 protein_coding protein_coding MGP_C3HHeJ_T0035804.1 MGP_C3HHeJ_G0019910.1 mouse_genomes_project 12 114732700 114735068 + MGP_C3HHeJ_P0035804 Btbd6 protein_coding protein_coding MGP_C3HHeJ_T0034932.1 MGP_C3HHeJ_G0019634.1 mouse_genomes_project 12 80689539 80730668 + MGP_C3HHeJ_P0034932 Slc39a9 protein_coding protein_coding MGP_C3HHeJ_T0100061.1 MGP_C3HHeJ_G0038255.1 mouse_genomes_project 12 10505685 10505820 - Gm24208 snoRNA snoRNA MGP_C3HHeJ_T0035626.1 MGP_C3HHeJ_G0019852.1 mouse_genomes_project 12 110334839 110340537 + MGP_C3HHeJ_P0035626 Slc25a47 protein_coding protein_coding MGP_C3HHeJ_T0000024.1 MGP_C3HHeJ_G0000018.1 mouse_genomes_project 12 115229961 115229977 - MGP_C3HHeJ_P0000024 Ighd3-2 IG_D_gene IG_D_gene MGP_C3HHeJ_T0035143.1 MGP_C3HHeJ_G0019692.1 mouse_genomes_project 12 85176271 85189358 + MGP_C3HHeJ_P0035143 Fcf1 protein_coding protein_coding MGP_C3HHeJ_T0035144.1 MGP_C3HHeJ_G0019692.1 mouse_genomes_project 12 85176355 85189346 + MGP_C3HHeJ_P0035144 Fcf1 protein_coding protein_coding MGP_C3HHeJ_T0035145.1 MGP_C3HHeJ_G0019692.1 mouse_genomes_project 12 85186264 85189352 + Fcf1 protein_coding retained_intron MGP_C3HHeJ_T0000838.1 MGP_C3HHeJ_G0000779.1 mouse_genomes_project 12 105148864 105151365 - TEC TEC MGP_C3HHeJ_T0034470.1 MGP_C3HHeJ_G0019455.1 mouse_genomes_project 12 39716090 39750584 - MGP_C3HHeJ_P0034470 Lrrn3 protein_coding protein_coding MGP_C3HHeJ_T0000124.1 MGP_C3HHeJ_G0000094.1 mouse_genomes_project 12 118190341 118190634 - MGP_C3HHeJ_P0000124 Ighv1-82 IG_V_gene IG_V_gene MGP_C3HHeJ_T0012721.1 MGP_C3HHeJ_G0010825.1 mouse_genomes_project 12 108608909 108609900 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034776.1 MGP_C3HHeJ_G0019570.1 mouse_genomes_project 12 72302954 72312492 - MGP_C3HHeJ_P0034776 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0009793.1 MGP_C3HHeJ_G0007926.1 mouse_genomes_project 12 111235869 111235947 + Mir544 miRNA miRNA MGP_C3HHeJ_T0034692.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69399010 69492381 - Map4k5 protein_coding processed_transcript MGP_C3HHeJ_T0034693.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69399010 69492287 - MGP_C3HHeJ_P0034693 Map4k5 protein_coding protein_coding MGP_C3HHeJ_T0034694.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69399010 69492478 - MGP_C3HHeJ_P0034694 Map4k5 protein_coding protein_coding MGP_C3HHeJ_T0034695.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69399019 69492441 - MGP_C3HHeJ_P0034695 Map4k5 protein_coding protein_coding MGP_C3HHeJ_T0034696.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69399019 69492381 - MGP_C3HHeJ_P0034696 Map4k5 protein_coding protein_coding MGP_C3HHeJ_T0034697.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69399021 69413554 - Map4k5 protein_coding retained_intron MGP_C3HHeJ_T0034698.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69412882 69413959 - Map4k5 protein_coding processed_transcript MGP_C3HHeJ_T0034699.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69439980 69472273 - Map4k5 protein_coding retained_intron MGP_C3HHeJ_T0034700.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69443659 69492401 - Map4k5 protein_coding retained_intron MGP_C3HHeJ_T0034701.1 MGP_C3HHeJ_G0019546.1 mouse_genomes_project 12 69444129 69452713 - Map4k5 protein_coding retained_intron MGP_C3HHeJ_T0034102.1 MGP_C3HHeJ_G0019324.1 mouse_genomes_project 12 1688945 1700510 + MGP_C3HHeJ_P0034102 BC068281 protein_coding protein_coding MGP_C3HHeJ_T0034103.1 MGP_C3HHeJ_G0019324.1 mouse_genomes_project 12 1697752 1707661 + MGP_C3HHeJ_P0034103 BC068281 protein_coding protein_coding MGP_C3HHeJ_T0000109.1 MGP_C3HHeJ_G0000084.1 mouse_genomes_project 12 116487569 116488038 - MGP_C3HHeJ_P0000109 Ighv1-12 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000110.1 MGP_C3HHeJ_G0000084.1 mouse_genomes_project 12 116487569 116488038 - MGP_C3HHeJ_P0000110 Ighv1-12 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000111.1 MGP_C3HHeJ_G0000084.1 mouse_genomes_project 12 116487569 116487863 - MGP_C3HHeJ_P0000111 Ighv1-12 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034294.1 MGP_C3HHeJ_G0019395.1 mouse_genomes_project 12 26597414 26715941 + MGP_C3HHeJ_P0034294 Tssc1 protein_coding protein_coding MGP_C3HHeJ_T0035344.1 MGP_C3HHeJ_G0019748.1 mouse_genomes_project 12 99225057 99356614 - MGP_C3HHeJ_P0035344 Kcnk10 protein_coding protein_coding MGP_C3HHeJ_T0006334.1 MGP_C3HHeJ_G0005271.1 mouse_genomes_project 12 35244611 35252897 - Gm29007 lincRNA lincRNA MGP_C3HHeJ_T0034510.1 MGP_C3HHeJ_G0019474.1 mouse_genomes_project 12 50695681 50913027 + MGP_C3HHeJ_P0034510 Nubpl protein_coding protein_coding MGP_C3HHeJ_T0034511.1 MGP_C3HHeJ_G0019474.1 mouse_genomes_project 12 50695700 50739260 + Nubpl protein_coding retained_intron MGP_C3HHeJ_T0034512.1 MGP_C3HHeJ_G0019474.1 mouse_genomes_project 12 50695705 50699029 + Nubpl protein_coding retained_intron MGP_C3HHeJ_T0034513.1 MGP_C3HHeJ_G0019474.1 mouse_genomes_project 12 50726859 50901759 + MGP_C3HHeJ_P0034513 Nubpl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000220.1 MGP_C3HHeJ_G0000170.1 mouse_genomes_project 12 115563934 115564361 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0034491.1 MGP_C3HHeJ_G0019464.1 mouse_genomes_project 12 48876919 49184818 - MGP_C3HHeJ_P0034491 Prkd1 protein_coding protein_coding MGP_C3HHeJ_T0035022.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83738682 83790407 + MGP_C3HHeJ_P0035022 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035023.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83743631 83762243 + MGP_C3HHeJ_P0035023 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035024.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83744544 83799112 + MGP_C3HHeJ_P0035024 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035025.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83744545 83767362 + MGP_C3HHeJ_P0035025 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035026.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83744549 83762241 + MGP_C3HHeJ_P0035026 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035027.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83744583 83775452 + MGP_C3HHeJ_P0035027 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035028.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83744598 83758709 + MGP_C3HHeJ_P0035028 Rbm25 protein_coding protein_coding MGP_C3HHeJ_T0035029.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83744618 83779987 + MGP_C3HHeJ_P0035029 Rbm25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035030.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83750789 83755397 + Rbm25 protein_coding retained_intron MGP_C3HHeJ_T0035031.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83758564 83767381 + Rbm25 protein_coding retained_intron MGP_C3HHeJ_T0035032.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83758649 83798009 + MGP_C3HHeJ_P0035032 Rbm25 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035033.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83758709 83784471 + Rbm25 protein_coding retained_intron MGP_C3HHeJ_T0035034.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83762192 83767741 + Rbm25 protein_coding processed_transcript MGP_C3HHeJ_T0035035.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83764295 83768098 + Rbm25 protein_coding retained_intron MGP_C3HHeJ_T0035036.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83774512 83775572 + Rbm25 protein_coding retained_intron MGP_C3HHeJ_T0035037.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83778963 83779987 + Rbm25 protein_coding processed_transcript MGP_C3HHeJ_T0035038.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83790514 83792101 + Rbm25 protein_coding processed_transcript MGP_C3HHeJ_T0035039.1 MGP_C3HHeJ_G0019658.1 mouse_genomes_project 12 83790842 83793888 + Rbm25 protein_coding retained_intron MGP_C3HHeJ_T0100116.1 MGP_C3HHeJ_G0038310.1 mouse_genomes_project 12 111163018 111163090 + Gm25357 snoRNA snoRNA MGP_C3HHeJ_T0000086.1 MGP_C3HHeJ_G0000066.1 mouse_genomes_project 12 116126873 116127167 - MGP_C3HHeJ_P0000086 Ighv9-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000087.1 MGP_C3HHeJ_G0000066.1 mouse_genomes_project 12 116126873 116127302 - MGP_C3HHeJ_P0000087 Ighv9-4 IG_V_gene IG_V_gene MGP_C3HHeJ_T0034582.1 MGP_C3HHeJ_G0019505.1 mouse_genomes_project 12 56466549 56472065 - MGP_C3HHeJ_P0034582 Foxa1 protein_coding protein_coding MGP_C3HHeJ_T0034112.1 MGP_C3HHeJ_G0019326.1 mouse_genomes_project 12 1730371 1764085 - MGP_C3HHeJ_P0034112 Ubxn2a protein_coding protein_coding MGP_C3HHeJ_T0034113.1 MGP_C3HHeJ_G0019326.1 mouse_genomes_project 12 1730688 1763697 - MGP_C3HHeJ_P0034113 Ubxn2a protein_coding protein_coding MGP_C3HHeJ_T0034114.1 MGP_C3HHeJ_G0019326.1 mouse_genomes_project 12 1731800 1763872 - MGP_C3HHeJ_P0034114 Ubxn2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034793.1 MGP_C3HHeJ_G0019576.1 mouse_genomes_project 12 72808388 72822232 - MGP_C3HHeJ_P0034793 Six4 protein_coding protein_coding MGP_C3HHeJ_T0034794.1 MGP_C3HHeJ_G0019576.1 mouse_genomes_project 12 72812218 72822263 - MGP_C3HHeJ_P0034794 Six4 protein_coding protein_coding MGP_C3HHeJ_T0000836.1 MGP_C3HHeJ_G0000777.1 mouse_genomes_project 12 89860951 89862861 - TEC TEC MGP_C3HHeJ_T0012672.1 MGP_C3HHeJ_G0010776.1 mouse_genomes_project 12 43252019 43254187 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100090.1 MGP_C3HHeJ_G0038284.1 mouse_genomes_project 12 65008305 65008437 + Gm22782 snoRNA snoRNA MGP_C3HHeJ_T0034865.1 MGP_C3HHeJ_G0019603.1 mouse_genomes_project 12 76337690 76344467 + MGP_C3HHeJ_P0034865 Gm10451 protein_coding protein_coding MGP_C3HHeJ_T0034930.1 MGP_C3HHeJ_G0019632.1 mouse_genomes_project 12 80556065 80646261 + MGP_C3HHeJ_P0034930 Galnt16 protein_coding protein_coding MGP_C3HHeJ_T0034145.1 MGP_C3HHeJ_G0019336.1 mouse_genomes_project 12 5889124 5912988 + MGP_C3HHeJ_P0034145 Sdc1 protein_coding protein_coding MGP_C3HHeJ_T0034146.1 MGP_C3HHeJ_G0019336.1 mouse_genomes_project 12 5889125 5907677 + Sdc1 protein_coding retained_intron MGP_C3HHeJ_T0034147.1 MGP_C3HHeJ_G0019336.1 mouse_genomes_project 12 5889214 5912335 + MGP_C3HHeJ_P0034147 Sdc1 protein_coding protein_coding MGP_C3HHeJ_T0034148.1 MGP_C3HHeJ_G0019336.1 mouse_genomes_project 12 5889604 5908242 + Sdc1 protein_coding processed_transcript MGP_C3HHeJ_T0034149.1 MGP_C3HHeJ_G0019336.1 mouse_genomes_project 12 5909780 5910651 + MGP_C3HHeJ_P0034149 Sdc1 protein_coding protein_coding MGP_C3HHeJ_T0098863.1 MGP_C3HHeJ_G0037057.1 mouse_genomes_project 12 79087826 79087931 - Gm27297 snRNA snRNA MGP_C3HHeJ_T0009736.1 MGP_C3HHeJ_G0007869.1 mouse_genomes_project 12 106240880 106240945 - Mir3069 miRNA miRNA MGP_C3HHeJ_T0012704.1 MGP_C3HHeJ_G0010808.1 mouse_genomes_project 12 88864892 88865732 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009792.1 MGP_C3HHeJ_G0007925.1 mouse_genomes_project 12 111235363 111235486 + Gm27379 miRNA miRNA MGP_C3HHeJ_T0003318.1 MGP_C3HHeJ_G0003051.1 mouse_genomes_project 12 31162953 31182658 - antisense antisense MGP_C3HHeJ_T0034343.1 MGP_C3HHeJ_G0019410.1 mouse_genomes_project 12 29424204 29466561 - MGP_C3HHeJ_P0034343 Slc26a4 protein_coding protein_coding MGP_C3HHeJ_T0034479.1 MGP_C3HHeJ_G0019459.1 mouse_genomes_project 12 43184665 43424157 - MGP_C3HHeJ_P0034479 Stxbp6 protein_coding protein_coding MGP_C3HHeJ_T0034480.1 MGP_C3HHeJ_G0019459.1 mouse_genomes_project 12 43187399 43424538 - MGP_C3HHeJ_P0034480 Stxbp6 protein_coding protein_coding MGP_C3HHeJ_T0034481.1 MGP_C3HHeJ_G0019459.1 mouse_genomes_project 12 43193394 43352927 - Stxbp6 protein_coding processed_transcript MGP_C3HHeJ_T0034482.1 MGP_C3HHeJ_G0019459.1 mouse_genomes_project 12 43232212 43424199 - MGP_C3HHeJ_P0034482 Stxbp6 protein_coding protein_coding MGP_C3HHeJ_T0034483.1 MGP_C3HHeJ_G0019459.1 mouse_genomes_project 12 43352894 43424363 - MGP_C3HHeJ_P0034483 Stxbp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009714.1 MGP_C3HHeJ_G0007847.1 mouse_genomes_project 12 69359523 69359633 - Mir681 miRNA miRNA MGP_C3HHeJ_T0034986.1 MGP_C3HHeJ_G0019650.1 mouse_genomes_project 12 81803945 81873683 - MGP_C3HHeJ_P0034986 Map3k9 protein_coding protein_coding MGP_C3HHeJ_T0034987.1 MGP_C3HHeJ_G0019650.1 mouse_genomes_project 12 81806867 81873387 - MGP_C3HHeJ_P0034987 Map3k9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034740.1 MGP_C3HHeJ_G0019559.1 mouse_genomes_project 12 70783715 70797218 - MGP_C3HHeJ_P0034740 Timm9 protein_coding protein_coding MGP_C3HHeJ_T0034741.1 MGP_C3HHeJ_G0019559.1 mouse_genomes_project 12 70783715 70797218 - MGP_C3HHeJ_P0034741 Timm9 protein_coding protein_coding MGP_C3HHeJ_T0009764.1 MGP_C3HHeJ_G0007897.1 mouse_genomes_project 12 111187445 111187522 + Mir882 miRNA miRNA MGP_C3HHeJ_T0034534.1 MGP_C3HHeJ_G0019484.1 mouse_genomes_project 12 53722275 53722647 - MGP_C3HHeJ_P0034534 Gm20403 protein_coding protein_coding MGP_C3HHeJ_T0034789.1 MGP_C3HHeJ_G0019575.1 mouse_genomes_project 12 72751876 72754676 - Six1 protein_coding processed_transcript MGP_C3HHeJ_T0034790.1 MGP_C3HHeJ_G0019575.1 mouse_genomes_project 12 72753687 72759040 - MGP_C3HHeJ_P0034790 Six1 protein_coding protein_coding MGP_C3HHeJ_T0034791.1 MGP_C3HHeJ_G0019575.1 mouse_genomes_project 12 72755391 72766838 - Six1 protein_coding processed_transcript MGP_C3HHeJ_T0034792.1 MGP_C3HHeJ_G0019575.1 mouse_genomes_project 12 72755634 72757152 - Six1 protein_coding processed_transcript MGP_C3HHeJ_T0034682.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69158797 69162158 - Sos2 protein_coding retained_intron MGP_C3HHeJ_T0034683.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69158801 69261318 - MGP_C3HHeJ_P0034683 Sos2 protein_coding protein_coding MGP_C3HHeJ_T0034684.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69159890 69261307 - MGP_C3HHeJ_P0034684 Sos2 protein_coding protein_coding MGP_C3HHeJ_T0034685.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69160126 69261093 - MGP_C3HHeJ_P0034685 Sos2 protein_coding protein_coding MGP_C3HHeJ_T0034686.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69160412 69163840 - Sos2 protein_coding retained_intron MGP_C3HHeJ_T0034687.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69169215 69172278 - Sos2 protein_coding retained_intron MGP_C3HHeJ_T0034688.1 MGP_C3HHeJ_G0019542.1 mouse_genomes_project 12 69191969 69194642 - Sos2 protein_coding retained_intron MGP_C3HHeJ_T0035479.1 MGP_C3HHeJ_G0019790.1 mouse_genomes_project 12 104300494 104336432 - MGP_C3HHeJ_P0035479 Asb2 protein_coding protein_coding MGP_C3HHeJ_T0035480.1 MGP_C3HHeJ_G0019790.1 mouse_genomes_project 12 104300498 104314937 - Asb2 protein_coding retained_intron MGP_C3HHeJ_T0035481.1 MGP_C3HHeJ_G0019790.1 mouse_genomes_project 12 104300498 104317726 - MGP_C3HHeJ_P0035481 Asb2 protein_coding protein_coding MGP_C3HHeJ_T0035482.1 MGP_C3HHeJ_G0019790.1 mouse_genomes_project 12 104314221 104316087 - Asb2 protein_coding processed_transcript MGP_C3HHeJ_T0035159.1 MGP_C3HHeJ_G0019697.1 mouse_genomes_project 12 85379986 85390793 - MGP_C3HHeJ_P0035159 Pgf protein_coding protein_coding MGP_C3HHeJ_T0098006.1 MGP_C3HHeJ_G0036218.1 mouse_genomes_project 12 9374482 9374613 + Gm26171 rRNA rRNA MGP_C3HHeJ_T0000004.1 MGP_C3HHeJ_G0000003.1 mouse_genomes_project 12 115030067 115035461 - MGP_C3HHeJ_P0000004 Igha IG_C_gene IG_C_gene MGP_C3HHeJ_T0000005.1 MGP_C3HHeJ_G0000003.1 mouse_genomes_project 12 115033926 115035461 - MGP_C3HHeJ_P0000005 Igha IG_C_gene IG_C_gene MGP_C3HHeJ_T0003332.1 MGP_C3HHeJ_G0003062.1 mouse_genomes_project 12 70646591 70674161 - 3110056K07Rik antisense antisense MGP_C3HHeJ_T0003333.1 MGP_C3HHeJ_G0003062.1 mouse_genomes_project 12 70668361 70674397 - 3110056K07Rik antisense antisense MGP_C3HHeJ_T0035458.1 MGP_C3HHeJ_G0019784.1 mouse_genomes_project 12 103713474 103733185 + MGP_C3HHeJ_P0035458 Ubr7 protein_coding protein_coding MGP_C3HHeJ_T0035837.1 MGP_C3HHeJ_G0019918.1 mouse_genomes_project 12 114962670 114966260 + MGP_C3HHeJ_P0035837 Tmem121 protein_coding protein_coding MGP_C3HHeJ_T0034126.1 MGP_C3HHeJ_G0019334.1 mouse_genomes_project 12 5564068 5574192 - MGP_C3HHeJ_P0034126 Slc7a15 protein_coding protein_coding MGP_C3HHeJ_T0034127.1 MGP_C3HHeJ_G0019334.1 mouse_genomes_project 12 5572847 5574213 - Slc7a15 protein_coding processed_transcript MGP_C3HHeJ_T0035356.1 MGP_C3HHeJ_G0019752.1 mouse_genomes_project 12 99580485 99694207 - MGP_C3HHeJ_P0035356 Eml5 protein_coding protein_coding MGP_C3HHeJ_T0035357.1 MGP_C3HHeJ_G0019752.1 mouse_genomes_project 12 99589510 99693751 - MGP_C3HHeJ_P0035357 Eml5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006375.1 MGP_C3HHeJ_G0005307.1 mouse_genomes_project 12 106615200 106662600 + lincRNA lincRNA MGP_C3HHeJ_T0006376.1 MGP_C3HHeJ_G0005307.1 mouse_genomes_project 12 106615599 106662598 + lincRNA lincRNA MGP_C3HHeJ_T0009819.1 MGP_C3HHeJ_G0007952.1 mouse_genomes_project 12 118211742 118211805 - Mir6388 miRNA miRNA MGP_C3HHeJ_T0012668.1 MGP_C3HHeJ_G0010772.1 mouse_genomes_project 12 5907224 5911080 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009810.1 MGP_C3HHeJ_G0007943.1 mouse_genomes_project 12 112237465 112237568 + Gm27299 miRNA miRNA MGP_C3HHeJ_T0009775.1 MGP_C3HHeJ_G0007908.1 mouse_genomes_project 12 111221848 111221933 + Mir494 miRNA miRNA MGP_C3HHeJ_T0098869.1 MGP_C3HHeJ_G0037063.1 mouse_genomes_project 12 101619261 101619367 - Gm25801 snRNA snRNA MGP_C3HHeJ_T0034123.1 MGP_C3HHeJ_G0019331.1 mouse_genomes_project 12 5318572 5322593 - MGP_C3HHeJ_P0034123 Gdf7 protein_coding protein_coding MGP_C3HHeJ_T0034633.1 MGP_C3HHeJ_G0019518.1 mouse_genomes_project 12 63855940 63859542 - MGP_C3HHeJ_P0034633 Fscb protein_coding protein_coding MGP_C3HHeJ_T0034960.1 MGP_C3HHeJ_G0019642.1 mouse_genomes_project 12 81433682 81613463 - MGP_C3HHeJ_P0034960 Gm20498 protein_coding protein_coding MGP_C3HHeJ_T0034965.1 MGP_C3HHeJ_G0019642.1 mouse_genomes_project 12 81551452 81613440 - MGP_C3HHeJ_P0034965 Gm20498 protein_coding protein_coding MGP_C3HHeJ_T0034972.1 MGP_C3HHeJ_G0019642.1 mouse_genomes_project 12 81555404 81613435 - MGP_C3HHeJ_P0034972 Gm20498 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034973.1 MGP_C3HHeJ_G0019642.1 mouse_genomes_project 12 81555440 81613319 - Gm20498 protein_coding processed_transcript MGP_C3HHeJ_T0034974.1 MGP_C3HHeJ_G0019642.1 mouse_genomes_project 12 81555462 81613435 - Gm20498 protein_coding processed_transcript MGP_C3HHeJ_T0034976.1 MGP_C3HHeJ_G0019642.1 mouse_genomes_project 12 81562190 81613435 - Gm20498 protein_coding processed_transcript MGP_C3HHeJ_T0011240.1 MGP_C3HHeJ_G0009373.1 mouse_genomes_project 12 91651054 91651377 + Gm26477 misc_RNA misc_RNA MGP_C3HHeJ_T0006342.1 MGP_C3HHeJ_G0005278.1 mouse_genomes_project 12 69857934 69865052 + F730035M05Rik lincRNA lincRNA MGP_C3HHeJ_T0034459.1 MGP_C3HHeJ_G0019451.1 mouse_genomes_project 12 38436299 38438780 + MGP_C3HHeJ_P0034459 Gm7008 protein_coding protein_coding MGP_C3HHeJ_T0034460.1 MGP_C3HHeJ_G0019451.1 mouse_genomes_project 12 38436905 38442716 + MGP_C3HHeJ_P0034460 Gm7008 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034461.1 MGP_C3HHeJ_G0019451.1 mouse_genomes_project 12 38436970 38442701 + MGP_C3HHeJ_P0034461 Gm7008 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098008.1 MGP_C3HHeJ_G0036220.1 mouse_genomes_project 12 23425114 23425220 + Gm22527 rRNA rRNA MGP_C3HHeJ_T0097848.1 MGP_C3HHeJ_G0036060.1 mouse_genomes_project 12 4846791 4848226 + pseudogene pseudogene MGP_C3HHeJ_T0034748.1 MGP_C3HHeJ_G0019562.1 mouse_genomes_project 12 71505457 71663715 + MGP_C3HHeJ_P0034748 Daam1 protein_coding protein_coding MGP_C3HHeJ_T0034361.1 MGP_C3HHeJ_G0019416.1 mouse_genomes_project 12 29887900 29987866 - MGP_C3HHeJ_P0034361 Prkar2b protein_coding protein_coding MGP_C3HHeJ_T0003330.1 MGP_C3HHeJ_G0003061.1 mouse_genomes_project 12 69385554 69389769 + 4930512B01Rik antisense antisense MGP_C3HHeJ_T0003331.1 MGP_C3HHeJ_G0003061.1 mouse_genomes_project 12 69385601 69435616 + 4930512B01Rik antisense antisense MGP_C3HHeJ_T0035550.1 MGP_C3HHeJ_G0019826.1 mouse_genomes_project 12 106242492 106250709 + MGP_C3HHeJ_P0035550 Glrx5 protein_coding protein_coding MGP_C3HHeJ_T0000063.1 MGP_C3HHeJ_G0000050.1 mouse_genomes_project 12 115780650 115781096 - MGP_C3HHeJ_P0000063 Ighv2-9 IG_V_gene IG_V_gene MGP_C3HHeJ_T0012686.1 MGP_C3HHeJ_G0010790.1 mouse_genomes_project 12 62264020 62266252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0034101.1 MGP_C3HHeJ_G0019323.1 mouse_genomes_project 12 1678812 1687233 - MGP_C3HHeJ_P0034101 Fkbp1b protein_coding protein_coding MGP_C3HHeJ_T0035088.1 MGP_C3HHeJ_G0019675.1 mouse_genomes_project 12 84480119 84509327 + MGP_C3HHeJ_P0035088 Zfp410 protein_coding protein_coding MGP_C3HHeJ_T0034524.1 MGP_C3HHeJ_G0019481.1 mouse_genomes_project 12 53461555 53505744 - MGP_C3HHeJ_P0034524 Snx6 protein_coding protein_coding MGP_C3HHeJ_T0035258.1 MGP_C3HHeJ_G0019727.1 mouse_genomes_project 12 87611439 87618691 + MGP_C3HHeJ_P0035258 Ahsa1 protein_coding protein_coding MGP_C3HHeJ_T0034600.1 MGP_C3HHeJ_G0019513.1 mouse_genomes_project 12 58067887 58090003 + MGP_C3HHeJ_P0034600 Mia2 protein_coding protein_coding MGP_C3HHeJ_T0034601.1 MGP_C3HHeJ_G0019513.1 mouse_genomes_project 12 58067888 58101400 + MGP_C3HHeJ_P0034601 Mia2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034026.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350363 570362 + MGP_C3HHeJ_P0034026 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034027.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350373 568918 + MGP_C3HHeJ_P0034027 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034028.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350399 568879 + MGP_C3HHeJ_P0034028 Dtnb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034029.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350423 568918 + MGP_C3HHeJ_P0034029 Dtnb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034030.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350424 424809 + MGP_C3HHeJ_P0034030 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034031.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350425 506818 + Dtnb protein_coding retained_intron MGP_C3HHeJ_T0034032.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350443 568915 + MGP_C3HHeJ_P0034032 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034033.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350453 568662 + MGP_C3HHeJ_P0034033 Dtnb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034034.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350455 568913 + MGP_C3HHeJ_P0034034 Dtnb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034035.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350456 440792 + Dtnb protein_coding processed_transcript MGP_C3HHeJ_T0034036.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350460 568915 + MGP_C3HHeJ_P0034036 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034037.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350465 568915 + MGP_C3HHeJ_P0034037 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034038.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350513 569025 + MGP_C3HHeJ_P0034038 Dtnb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034039.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350526 376252 + MGP_C3HHeJ_P0034039 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034040.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350610 538057 + MGP_C3HHeJ_P0034040 Dtnb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0034041.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 350974 568911 + MGP_C3HHeJ_P0034041 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034042.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 368635 568915 + MGP_C3HHeJ_P0034042 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034043.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 410339 568915 + MGP_C3HHeJ_P0034043 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034044.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 463935 504698 + Dtnb protein_coding retained_intron MGP_C3HHeJ_T0034045.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 505269 535627 + Dtnb protein_coding processed_transcript MGP_C3HHeJ_T0034046.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 535440 568662 + Dtnb protein_coding retained_intron MGP_C3HHeJ_T0034047.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 535695 568918 + MGP_C3HHeJ_P0034047 Dtnb protein_coding protein_coding MGP_C3HHeJ_T0034048.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 561854 568918 + Dtnb protein_coding processed_transcript MGP_C3HHeJ_T0034049.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 562064 568917 + Dtnb protein_coding retained_intron MGP_C3HHeJ_T0034050.1 MGP_C3HHeJ_G0019306.1 mouse_genomes_project 12 567088 568918 + Dtnb protein_coding retained_intron MGP_C3HHeJ_T0035185.1 MGP_C3HHeJ_G0019708.1 mouse_genomes_project 12 86064400 86073475 - MGP_C3HHeJ_P0035185 0610007P14Rik protein_coding protein_coding MGP_C3HHeJ_T0035186.1 MGP_C3HHeJ_G0019708.1 mouse_genomes_project 12 86064611 86073465 - 0610007P14Rik protein_coding processed_transcript MGP_C3HHeJ_T0035187.1 MGP_C3HHeJ_G0019708.1 mouse_genomes_project 12 86068049 86073497 - 0610007P14Rik protein_coding retained_intron MGP_C3HHeJ_T0035188.1 MGP_C3HHeJ_G0019708.1 mouse_genomes_project 12 86068284 86071203 - 0610007P14Rik protein_coding retained_intron MGP_C3HHeJ_T0035189.1 MGP_C3HHeJ_G0019708.1 mouse_genomes_project 12 86068491 86073503 - MGP_C3HHeJ_P0035189 0610007P14Rik protein_coding protein_coding MGP_C3HHeJ_T0098004.1 MGP_C3HHeJ_G0036216.1 mouse_genomes_project 12 1180083 1180197 + Gm23756 rRNA rRNA MGP_C3HHeJ_T0009720.1 MGP_C3HHeJ_G0007853.1 mouse_genomes_project 12 80423833 80423898 - Mir1843a miRNA miRNA MGP_C3HHeJ_T0098016.1 MGP_C3HHeJ_G0036228.1 mouse_genomes_project 12 68175436 68175554 + n-R5s61 rRNA rRNA MGP_C3HHeJ_T0034820.1 MGP_C3HHeJ_G0019589.1 mouse_genomes_project 12 75160080 75247058 + MGP_C3HHeJ_P0034820 Rhoj protein_coding protein_coding MGP_C3HHeJ_T0034821.1 MGP_C3HHeJ_G0019589.1 mouse_genomes_project 12 75160080 75250558 + MGP_C3HHeJ_P0034821 Rhoj protein_coding protein_coding MGP_C3HHeJ_T0034822.1 MGP_C3HHeJ_G0019589.1 mouse_genomes_project 12 75160080 75244919 + MGP_C3HHeJ_P0034822 Rhoj protein_coding protein_coding MGP_C3HHeJ_T0034823.1 MGP_C3HHeJ_G0019589.1 mouse_genomes_project 12 75160431 75231704 + Rhoj protein_coding retained_intron MGP_C3HHeJ_T0034824.1 MGP_C3HHeJ_G0019589.1 mouse_genomes_project 12 75160639 75249314 + MGP_C3HHeJ_P0034824 Rhoj protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035623.1 MGP_C3HHeJ_G0019851.1 mouse_genomes_project 12 110308861 110318865 - MGP_C3HHeJ_P0035623 Slc25a29 protein_coding protein_coding MGP_C3HHeJ_T0035624.1 MGP_C3HHeJ_G0019851.1 mouse_genomes_project 12 110310226 110314616 - Slc25a29 protein_coding retained_intron MGP_C3HHeJ_T0035625.1 MGP_C3HHeJ_G0019851.1 mouse_genomes_project 12 110313941 110318802 - Slc25a29 protein_coding retained_intron MGP_C3HHeJ_T0009707.1 MGP_C3HHeJ_G0007840.1 mouse_genomes_project 12 53341283 53341363 - Mir1892 miRNA miRNA MGP_C3HHeJ_T0034392.1 MGP_C3HHeJ_G0019426.1 mouse_genomes_project 12 31942623 31944770 + MGP_C3HHeJ_P0034392 Twist1 protein_coding protein_coding MGP_C3HHeJ_T0098874.1 MGP_C3HHeJ_G0037068.1 mouse_genomes_project 12 120836838 120836945 - Gm25577 snRNA snRNA MGP_C3HHeJ_T0034271.1 MGP_C3HHeJ_G0019382.1 mouse_genomes_project 12 22669820 22763933 + MGP_C3HHeJ_P0034271 Kidins220 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034272.1 MGP_C3HHeJ_G0019382.1 mouse_genomes_project 12 22669827 22760483 + MGP_C3HHeJ_P0034272 Kidins220 protein_coding protein_coding MGP_C3HHeJ_T0009761.1 MGP_C3HHeJ_G0007894.1 mouse_genomes_project 12 111114316 111114436 + Mir1188 miRNA miRNA MGP_C3HHeJ_T0011246.1 MGP_C3HHeJ_G0009379.1 mouse_genomes_project 12 111106395 111106493 + Gm27350 misc_RNA misc_RNA MGP_C3HHeJ_T0009798.1 MGP_C3HHeJ_G0007931.1 mouse_genomes_project 12 111242172 111242254 + Mir453 miRNA miRNA MGP_C3HHeJ_T0034428.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36928172 37019296 + MGP_C3HHeJ_P0034428 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034429.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36928874 37021262 + MGP_C3HHeJ_P0034429 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034430.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36929076 37018826 + MGP_C3HHeJ_P0034430 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034431.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36929111 36930610 + MGP_C3HHeJ_P0034431 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034432.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36929141 36986463 + MGP_C3HHeJ_P0034432 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034433.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36929641 37018823 + MGP_C3HHeJ_P0034433 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034434.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36929906 37020346 + Etv1 protein_coding retained_intron MGP_C3HHeJ_T0034435.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36929922 36986375 + MGP_C3HHeJ_P0034435 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034436.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36932266 37019223 + MGP_C3HHeJ_P0034436 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034437.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36932277 37019008 + MGP_C3HHeJ_P0034437 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034438.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36932305 37021250 + MGP_C3HHeJ_P0034438 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034439.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36974635 36982421 + MGP_C3HHeJ_P0034439 Etv1 protein_coding protein_coding MGP_C3HHeJ_T0034440.1 MGP_C3HHeJ_G0019446.1 mouse_genomes_project 12 36988602 37018763 + Etv1 protein_coding processed_transcript MGP_C3HHeJ_T0035247.1 MGP_C3HHeJ_G0019722.1 mouse_genomes_project 12 87481279 87500915 + MGP_C3HHeJ_P0035247 Gstz1 protein_coding protein_coding MGP_C3HHeJ_T0035248.1 MGP_C3HHeJ_G0019722.1 mouse_genomes_project 12 87493839 87500024 + MGP_C3HHeJ_P0035248 Gstz1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0034070.1 MGP_C3HHeJ_G0019309.1 mouse_genomes_project 12 760267 765930 + MGP_C3HHeJ_P0034070 Pomc protein_coding protein_coding MGP_C3HHeJ_T0034702.1 MGP_C3HHeJ_G0019547.1 mouse_genomes_project 12 69492382 69572451 + MGP_C3HHeJ_P0034702 Atl1 protein_coding protein_coding MGP_C3HHeJ_T0034391.1 MGP_C3HHeJ_G0019425.1 mouse_genomes_project 12 31909731 31910617 + MGP_C3HHeJ_P0034391 Ferd3l protein_coding protein_coding MGP_C3HHeJ_T0034715.1 MGP_C3HHeJ_G0019552.1 mouse_genomes_project 12 69810909 69857677 - MGP_C3HHeJ_P0034715 Pygl protein_coding protein_coding MGP_C3HHeJ_T0034716.1 MGP_C3HHeJ_G0019552.1 mouse_genomes_project 12 69817544 69817987 - Pygl protein_coding processed_transcript MGP_C3HHeJ_T0034717.1 MGP_C3HHeJ_G0019552.1 mouse_genomes_project 12 69832785 69857706 - Pygl protein_coding retained_intron MGP_C3HHeJ_T0034718.1 MGP_C3HHeJ_G0019552.1 mouse_genomes_project 12 69837549 69857439 - Pygl protein_coding processed_transcript MGP_C3HHeJ_T0034411.1 MGP_C3HHeJ_G0019436.1 mouse_genomes_project 12 34196266 34197712 + MGP_C3HHeJ_P0034411 Gm5434 protein_coding protein_coding MGP_C3HHeJ_T0035878.1 MGP_C3HHeJ_G0019934.1 mouse_genomes_project 12 121815123 121841992 + MGP_C3HHeJ_P0035878 Macc1 protein_coding protein_coding MGP_C3HHeJ_T0035342.1 MGP_C3HHeJ_G0019746.1 mouse_genomes_project 12 98968120 99023452 - MGP_C3HHeJ_P0035342 Galc protein_coding protein_coding MGP_C3HHeJ_T0009726.1 MGP_C3HHeJ_G0007859.1 mouse_genomes_project 12 87785696 87785775 - Mir3068 miRNA miRNA MGP_C3HHeJ_T0000230.1 MGP_C3HHeJ_G0000180.1 mouse_genomes_project 12 115971058 115971334 - IG_V_pseudogene IG_V_pseudogene MGP_C3HHeJ_T0035663.1 MGP_C3HHeJ_G0019861.1 mouse_genomes_project 12 112231023 112247019 - MGP_C3HHeJ_P0035663 1700001K19Rik protein_coding protein_coding MGP_C3HHeJ_T0034663.1 MGP_C3HHeJ_G0019531.1 mouse_genomes_project 12 68744546 68746773 - MGP_C3HHeJ_P0034663 Rpl36al protein_coding protein_coding MGP_C3HHeJ_T0034664.1 MGP_C3HHeJ_G0019531.1 mouse_genomes_project 12 68744553 68746800 - MGP_C3HHeJ_P0034664 Rpl36al protein_coding protein_coding MGP_C3HHeJ_T0034665.1 MGP_C3HHeJ_G0019531.1 mouse_genomes_project 12 68744556 68746870 - MGP_C3HHeJ_P0034665 Rpl36al protein_coding protein_coding MGP_C3HHeJ_T0100184.1 MGP_C3HHeJ_G0038378.1 mouse_genomes_project 14 26530449 26530578 + Gm25498 snoRNA snoRNA MGP_C3HHeJ_T0098041.1 MGP_C3HHeJ_G0036253.1 mouse_genomes_project 14 72628531 72628641 + n-R5s48 rRNA rRNA MGP_C3HHeJ_T0039220.1 MGP_C3HHeJ_G0021087.1 mouse_genomes_project 14 49967671 49985147 + MGP_C3HHeJ_P0039220 Lrrc16b protein_coding protein_coding MGP_C3HHeJ_T0039221.1 MGP_C3HHeJ_G0021087.1 mouse_genomes_project 14 49967822 49984846 + MGP_C3HHeJ_P0039221 Lrrc16b protein_coding unknown_likely_coding MGP_C3HHeJ_T0039811.1 MGP_C3HHeJ_G0021297.1 mouse_genomes_project 14 68114814 68224997 - Rb1 protein_coding processed_transcript MGP_C3HHeJ_T0039812.1 MGP_C3HHeJ_G0021297.1 mouse_genomes_project 14 68119158 68263935 - MGP_C3HHeJ_P0039812 Rb1 protein_coding protein_coding MGP_C3HHeJ_T0039813.1 MGP_C3HHeJ_G0021297.1 mouse_genomes_project 14 68120631 68126925 - Rb1 protein_coding retained_intron MGP_C3HHeJ_T0039815.1 MGP_C3HHeJ_G0021297.1 mouse_genomes_project 14 68167773 68169014 - Rb1 protein_coding processed_transcript MGP_C3HHeJ_T0039816.1 MGP_C3HHeJ_G0021297.1 mouse_genomes_project 14 68196730 68198652 - Rb1 protein_coding retained_intron MGP_C3HHeJ_T0039817.1 MGP_C3HHeJ_G0021297.1 mouse_genomes_project 14 68216070 68263754 - MGP_C3HHeJ_P0039817 Rb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038069.1 MGP_C3HHeJ_G0020753.1 mouse_genomes_project 14 10314538 10728877 + MGP_C3HHeJ_P0038069 Thrb protein_coding protein_coding MGP_C3HHeJ_T0038070.1 MGP_C3HHeJ_G0020753.1 mouse_genomes_project 14 10314538 10730409 + MGP_C3HHeJ_P0038070 Thrb protein_coding protein_coding MGP_C3HHeJ_T0038071.1 MGP_C3HHeJ_G0020753.1 mouse_genomes_project 14 10676421 10730407 + MGP_C3HHeJ_P0038071 Thrb protein_coding protein_coding MGP_C3HHeJ_T0002491.1 MGP_C3HHeJ_G0002403.1 mouse_genomes_project 14 48594495 48594553 + MGP_C3HHeJ_P0002491 Traj34 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038599.1 MGP_C3HHeJ_G0020888.1 mouse_genomes_project 14 26272591 26507753 - MGP_C3HHeJ_P0038599 Wdfy4 protein_coding protein_coding MGP_C3HHeJ_T0038600.1 MGP_C3HHeJ_G0020888.1 mouse_genomes_project 14 26272614 26507753 - MGP_C3HHeJ_P0038600 Wdfy4 protein_coding protein_coding MGP_C3HHeJ_T0038607.1 MGP_C3HHeJ_G0020888.1 mouse_genomes_project 14 26328707 26482036 - MGP_C3HHeJ_P0038607 Wdfy4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038608.1 MGP_C3HHeJ_G0020888.1 mouse_genomes_project 14 26332959 26337997 - MGP_C3HHeJ_P0038608 Wdfy4 protein_coding protein_coding MGP_C3HHeJ_T0038609.1 MGP_C3HHeJ_G0020888.1 mouse_genomes_project 14 26481841 26508195 - MGP_C3HHeJ_P0038609 Wdfy4 protein_coding protein_coding MGP_C3HHeJ_T0098953.1 MGP_C3HHeJ_G0037147.1 mouse_genomes_project 14 95221621 95221777 - Gm25130 snRNA snRNA MGP_C3HHeJ_T0040104.1 MGP_C3HHeJ_G0021414.1 mouse_genomes_project 14 119308943 119325988 - MGP_C3HHeJ_P0040104 Gm5089 protein_coding protein_coding MGP_C3HHeJ_T0039490.1 MGP_C3HHeJ_G0021177.1 mouse_genomes_project 14 55519730 55634181 + MGP_C3HHeJ_P0039490 Mipep protein_coding protein_coding MGP_C3HHeJ_T0006618.1 MGP_C3HHeJ_G0005464.1 mouse_genomes_project 14 50361805 50372227 - Gm26751 lincRNA lincRNA MGP_C3HHeJ_T0038159.1 MGP_C3HHeJ_G0020785.1 mouse_genomes_project 14 13862738 13965630 + MGP_C3HHeJ_P0038159 Vcl protein_coding protein_coding MGP_C3HHeJ_T0009916.1 MGP_C3HHeJ_G0008049.1 mouse_genomes_project 14 62917132 62917242 - Mir6539 miRNA miRNA MGP_C3HHeJ_T0039524.1 MGP_C3HHeJ_G0021193.1 mouse_genomes_project 14 57789704 57797610 - MGP_C3HHeJ_P0039524 Defb48 protein_coding protein_coding MGP_C3HHeJ_T0039507.1 MGP_C3HHeJ_G0021185.1 mouse_genomes_project 14 56357731 56362189 + MGP_C3HHeJ_P0039507 Kcnrg protein_coding protein_coding MGP_C3HHeJ_T0039829.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69740055 69758466 + MGP_C3HHeJ_P0039829 Esd protein_coding protein_coding MGP_C3HHeJ_T0039830.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69740077 69750358 + Esd protein_coding retained_intron MGP_C3HHeJ_T0039831.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69740079 69747210 + Esd protein_coding processed_transcript MGP_C3HHeJ_T0039832.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69740115 69753305 + MGP_C3HHeJ_P0039832 Esd protein_coding protein_coding MGP_C3HHeJ_T0039833.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69740142 69757549 + MGP_C3HHeJ_P0039833 Esd protein_coding protein_coding MGP_C3HHeJ_T0039834.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69746197 69751307 + Esd protein_coding retained_intron MGP_C3HHeJ_T0039835.1 MGP_C3HHeJ_G0021305.1 mouse_genomes_project 14 69746260 69757456 + MGP_C3HHeJ_P0039835 Esd protein_coding protein_coding MGP_C3HHeJ_T0009939.1 MGP_C3HHeJ_G0008072.1 mouse_genomes_project 14 114909099 114909202 + Mir6241 miRNA miRNA MGP_C3HHeJ_T0040100.1 MGP_C3HHeJ_G0021412.1 mouse_genomes_project 14 118957969 119012907 + MGP_C3HHeJ_P0040100 Tm9sf2 protein_coding protein_coding MGP_C3HHeJ_T0040101.1 MGP_C3HHeJ_G0021412.1 mouse_genomes_project 14 118958069 118989788 + MGP_C3HHeJ_P0040101 Tm9sf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040102.1 MGP_C3HHeJ_G0021412.1 mouse_genomes_project 14 118958199 119012019 + MGP_C3HHeJ_P0040102 Tm9sf2 protein_coding protein_coding MGP_C3HHeJ_T0006594.1 MGP_C3HHeJ_G0005446.1 mouse_genomes_project 14 25172474 25191045 + D830044D21Rik lincRNA lincRNA MGP_C3HHeJ_T0003465.1 MGP_C3HHeJ_G0003152.1 mouse_genomes_project 14 25580983 25583034 - Gm17210 antisense antisense MGP_C3HHeJ_T0006655.1 MGP_C3HHeJ_G0005493.1 mouse_genomes_project 14 120887376 120913115 + 1700024B18Rik lincRNA lincRNA MGP_C3HHeJ_T0003473.1 MGP_C3HHeJ_G0003160.1 mouse_genomes_project 14 40911405 40931945 - Gm10371 antisense antisense MGP_C3HHeJ_T0038877.1 MGP_C3HHeJ_G0020982.1 mouse_genomes_project 14 44387376 44393136 + MGP_C3HHeJ_P0038877 Tlr11 protein_coding protein_coding MGP_C3HHeJ_T0038878.1 MGP_C3HHeJ_G0020982.1 mouse_genomes_project 14 44389974 44392967 + MGP_C3HHeJ_P0038878 Tlr11 protein_coding protein_coding MGP_C3HHeJ_T0039941.1 MGP_C3HHeJ_G0021351.1 mouse_genomes_project 14 83933967 83940611 - MGP_C3HHeJ_P0039941 Pcdh20 protein_coding protein_coding MGP_C3HHeJ_T0039942.1 MGP_C3HHeJ_G0021351.1 mouse_genomes_project 14 83936084 83940561 - MGP_C3HHeJ_P0039942 Pcdh20 protein_coding protein_coding MGP_C3HHeJ_T0039130.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071674 49083319 - MGP_C3HHeJ_P0039130 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039131.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071674 49083268 - MGP_C3HHeJ_P0039131 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039132.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071674 49122544 - MGP_C3HHeJ_P0039132 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039133.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071674 49083347 - MGP_C3HHeJ_P0039133 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039134.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071675 49083353 - MGP_C3HHeJ_P0039134 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039135.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071675 49122229 - MGP_C3HHeJ_P0039135 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039136.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49071680 49083334 - MGP_C3HHeJ_P0039136 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039137.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49072242 49122544 - MGP_C3HHeJ_P0039137 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039138.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49072242 49082890 - MGP_C3HHeJ_P0039138 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039139.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49072416 49074052 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039140.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49072802 49073726 - MGP_C3HHeJ_P0039140 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039141.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49073770 49075369 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039142.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49074242 49078054 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039143.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49074502 49075550 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039144.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49074716 49079831 - Acin1 protein_coding processed_transcript MGP_C3HHeJ_T0039145.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49074808 49077818 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039146.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49075244 49083337 - MGP_C3HHeJ_P0039146 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039147.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49076058 49079465 - Acin1 protein_coding processed_transcript MGP_C3HHeJ_T0039148.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49080357 49083333 - Acin1 protein_coding processed_transcript MGP_C3HHeJ_T0039149.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49080410 49083333 - Acin1 protein_coding processed_transcript MGP_C3HHeJ_T0039150.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49080972 49093907 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039151.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49081086 49083343 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039152.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49091995 49094874 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0039153.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49095322 49121673 - MGP_C3HHeJ_P0039153 Acin1 protein_coding protein_coding MGP_C3HHeJ_T0039154.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49109070 49122246 - Acin1 protein_coding processed_transcript MGP_C3HHeJ_T0039155.1 MGP_C3HHeJ_G0021064.1 mouse_genomes_project 14 49113874 49122228 - Acin1 protein_coding retained_intron MGP_C3HHeJ_T0038871.1 MGP_C3HHeJ_G0020978.1 mouse_genomes_project 14 44299528 44300572 - MGP_C3HHeJ_P0038871 Olfr732 protein_coding protein_coding MGP_C3HHeJ_T0039269.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50066503 50070150 - MGP_C3HHeJ_P0039269 Psme2 protein_coding protein_coding MGP_C3HHeJ_T0039270.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50066504 50070164 - MGP_C3HHeJ_P0039270 Psme2 protein_coding protein_coding MGP_C3HHeJ_T0039271.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50066509 50067667 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0039272.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50066509 50068574 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0039273.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50067116 50069212 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0039274.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50067134 50070176 - MGP_C3HHeJ_P0039274 Psme2 protein_coding protein_coding MGP_C3HHeJ_T0039275.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50067145 50069927 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0039276.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50068256 50070036 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0039277.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50068379 50070011 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0039278.1 MGP_C3HHeJ_G0021096.1 mouse_genomes_project 14 50069060 50069958 - Psme2 protein_coding retained_intron MGP_C3HHeJ_T0098039.1 MGP_C3HHeJ_G0036251.1 mouse_genomes_project 14 68884588 68884694 - Gm22164 rRNA rRNA MGP_C3HHeJ_T0039428.1 MGP_C3HHeJ_G0021156.1 mouse_genomes_project 14 52446533 52449040 + MGP_C3HHeJ_P0039428 Mrpl57 protein_coding protein_coding MGP_C3HHeJ_T0006631.1 MGP_C3HHeJ_G0005475.1 mouse_genomes_project 14 59459244 59460028 + Mir124a-1hg lincRNA lincRNA MGP_C3HHeJ_T0006632.1 MGP_C3HHeJ_G0005475.1 mouse_genomes_project 14 59459966 59465884 + Mir124a-1hg lincRNA lincRNA MGP_C3HHeJ_T0006633.1 MGP_C3HHeJ_G0005475.1 mouse_genomes_project 14 59460447 59462378 + Mir124a-1hg lincRNA lincRNA MGP_C3HHeJ_T0006634.1 MGP_C3HHeJ_G0005475.1 mouse_genomes_project 14 59461596 59462593 + Mir124a-1hg lincRNA lincRNA MGP_C3HHeJ_T0039516.1 MGP_C3HHeJ_G0021189.1 mouse_genomes_project 14 57354689 57390264 + Fam124a protein_coding processed_transcript MGP_C3HHeJ_T0039517.1 MGP_C3HHeJ_G0021189.1 mouse_genomes_project 14 57354689 57407957 + Fam124a protein_coding processed_transcript MGP_C3HHeJ_T0039518.1 MGP_C3HHeJ_G0021189.1 mouse_genomes_project 14 57354689 57410410 + MGP_C3HHeJ_P0039518 Fam124a protein_coding protein_coding MGP_C3HHeJ_T0039519.1 MGP_C3HHeJ_G0021189.1 mouse_genomes_project 14 57354727 57365433 + Fam124a protein_coding processed_transcript MGP_C3HHeJ_T0003458.1 MGP_C3HHeJ_G0003146.1 mouse_genomes_project 14 16576864 16582264 + Gm29626 antisense antisense MGP_C3HHeJ_T0003459.1 MGP_C3HHeJ_G0003146.1 mouse_genomes_project 14 16576881 16582262 + Gm29626 antisense antisense MGP_C3HHeJ_T0038675.1 MGP_C3HHeJ_G0020917.1 mouse_genomes_project 14 29532523 29537938 + MGP_C3HHeJ_P0038675 4930474N05Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038676.1 MGP_C3HHeJ_G0020917.1 mouse_genomes_project 14 29532531 29534681 + MGP_C3HHeJ_P0038676 4930474N05Rik protein_coding protein_coding MGP_C3HHeJ_T0012865.1 MGP_C3HHeJ_G0010969.1 mouse_genomes_project 14 38962002 38962912 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038729.1 MGP_C3HHeJ_G0020938.1 mouse_genomes_project 14 38970198 38974486 + Gpr137c protein_coding processed_transcript MGP_C3HHeJ_T0038730.1 MGP_C3HHeJ_G0020938.1 mouse_genomes_project 14 38970472 39034674 + MGP_C3HHeJ_P0038730 Gpr137c protein_coding protein_coding MGP_C3HHeJ_T0038731.1 MGP_C3HHeJ_G0020938.1 mouse_genomes_project 14 39019057 39032697 + Gpr137c protein_coding retained_intron MGP_C3HHeJ_T0017147.1 MGP_C3HHeJ_G0015025.1 mouse_genomes_project 14 45227 95799 - Gm10044 processed_transcript antisense MGP_C3HHeJ_T0017149.1 MGP_C3HHeJ_G0015025.1 mouse_genomes_project 14 57458 95723 - Gm10044 processed_transcript antisense MGP_C3HHeJ_T0017150.1 MGP_C3HHeJ_G0015025.1 mouse_genomes_project 14 65913 76918 - Gm10044 processed_transcript antisense MGP_C3HHeJ_T0017151.1 MGP_C3HHeJ_G0015025.1 mouse_genomes_project 14 73738 76988 - Gm10044 processed_transcript retained_intron MGP_C3HHeJ_T0017152.1 MGP_C3HHeJ_G0015025.1 mouse_genomes_project 14 73971 95701 - Gm10044 processed_transcript antisense MGP_C3HHeJ_T0009909.1 MGP_C3HHeJ_G0008042.1 mouse_genomes_project 14 57644467 57644604 + Mir8098 miRNA miRNA MGP_C3HHeJ_T0038664.1 MGP_C3HHeJ_G0020913.1 mouse_genomes_project 14 27990359 27999977 - MGP_C3HHeJ_P0038664 Opn4 protein_coding protein_coding MGP_C3HHeJ_T0038665.1 MGP_C3HHeJ_G0020913.1 mouse_genomes_project 14 27992084 27999977 - MGP_C3HHeJ_P0038665 Opn4 protein_coding protein_coding MGP_C3HHeJ_T0002495.1 MGP_C3HHeJ_G0002407.1 mouse_genomes_project 14 48599694 48599753 + MGP_C3HHeJ_P0002495 Traj30 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038597.1 MGP_C3HHeJ_G0020886.1 mouse_genomes_project 14 26139943 26142771 + MGP_C3HHeJ_P0038597 Fam170b protein_coding protein_coding MGP_C3HHeJ_T0038933.1 MGP_C3HHeJ_G0021013.1 mouse_genomes_project 14 45198715 45201938 + MGP_C3HHeJ_P0038933 Eddm3b protein_coding protein_coding MGP_C3HHeJ_T0038892.1 MGP_C3HHeJ_G0020995.1 mouse_genomes_project 14 44826877 44851478 - MGP_C3HHeJ_P0038892 Ttc5 protein_coding protein_coding MGP_C3HHeJ_T0039657.1 MGP_C3HHeJ_G0021244.1 mouse_genomes_project 14 62032734 62101591 - MGP_C3HHeJ_P0039657 Ppp2r2a protein_coding protein_coding MGP_C3HHeJ_T0002573.1 MGP_C3HHeJ_G0002475.1 mouse_genomes_project 14 47144228 47144844 + MGP_C3HHeJ_P0002573 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038222.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16302601 16832809 - MGP_C3HHeJ_P0038222 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038223.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16302601 16832809 - MGP_C3HHeJ_P0038223 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038224.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16311864 16832809 - MGP_C3HHeJ_P0038224 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038225.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16311864 16832809 - MGP_C3HHeJ_P0038225 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038226.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16311864 16832809 - MGP_C3HHeJ_P0038226 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038227.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16312551 17038503 - MGP_C3HHeJ_P0038227 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038228.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16312565 16673014 - MGP_C3HHeJ_P0038228 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038229.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16312565 17039157 - MGP_C3HHeJ_P0038229 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038230.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16312565 16832809 - MGP_C3HHeJ_P0038230 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038231.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16313061 17038503 - MGP_C3HHeJ_P0038231 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038232.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16313061 17038275 - MGP_C3HHeJ_P0038232 Kcnma1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038233.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16313191 17038423 - MGP_C3HHeJ_P0038233 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038234.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16323295 16832809 - MGP_C3HHeJ_P0038234 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038235.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 16323295 16832809 - MGP_C3HHeJ_P0038235 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038236.1 MGP_C3HHeJ_G0020796.1 mouse_genomes_project 14 17036953 17038596 - MGP_C3HHeJ_P0038236 Kcnma1 protein_coding protein_coding MGP_C3HHeJ_T0038271.1 MGP_C3HHeJ_G0020806.1 mouse_genomes_project 14 18936062 18953319 - MGP_C3HHeJ_P0038271 protein_coding protein_coding MGP_C3HHeJ_T0038275.1 MGP_C3HHeJ_G0020806.1 mouse_genomes_project 14 18936535 18952695 - MGP_C3HHeJ_P0038275 protein_coding protein_coding MGP_C3HHeJ_T0017212.1 MGP_C3HHeJ_G0015050.1 mouse_genomes_project 14 119803247 119817908 + 4930594M22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017213.1 MGP_C3HHeJ_G0015050.1 mouse_genomes_project 14 119803284 119819660 + 4930594M22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017214.1 MGP_C3HHeJ_G0015050.1 mouse_genomes_project 14 119803292 119827687 + 4930594M22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0039952.1 MGP_C3HHeJ_G0021354.1 mouse_genomes_project 14 91853040 92276976 - MGP_C3HHeJ_P0039952 Klhl1 protein_coding protein_coding MGP_C3HHeJ_T0000890.1 MGP_C3HHeJ_G0000830.1 mouse_genomes_project 14 64356176 64360716 - TEC TEC MGP_C3HHeJ_T0038517.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24804634 24895508 - MGP_C3HHeJ_P0038517 Hacl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038521.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24851455 24895574 - MGP_C3HHeJ_P0038521 Hacl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038522.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24859957 24895594 - MGP_C3HHeJ_P0038522 Hacl1 protein_coding protein_coding MGP_C3HHeJ_T0038523.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24860398 24867099 - Hacl1 protein_coding processed_transcript MGP_C3HHeJ_T0038524.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24860702 24863116 - Hacl1 protein_coding processed_transcript MGP_C3HHeJ_T0038525.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24860744 24895508 - MGP_C3HHeJ_P0038525 Hacl1 protein_coding protein_coding MGP_C3HHeJ_T0038526.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24860744 24895508 - MGP_C3HHeJ_P0038526 Hacl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038527.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24860744 24895542 - MGP_C3HHeJ_P0038527 Hacl1 protein_coding protein_coding MGP_C3HHeJ_T0038528.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24860744 24895508 - MGP_C3HHeJ_P0038528 Hacl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038529.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24879207 24895802 - MGP_C3HHeJ_P0038529 Hacl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038530.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24882552 24895887 - MGP_C3HHeJ_P0038530 Hacl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038531.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24883364 24895576 - Hacl1 protein_coding retained_intron MGP_C3HHeJ_T0038532.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24888289 24895541 - Hacl1 protein_coding retained_intron MGP_C3HHeJ_T0038533.1 MGP_C3HHeJ_G0020867.1 mouse_genomes_project 14 24888428 24895916 - Hacl1 protein_coding retained_intron MGP_C3HHeJ_T0038653.1 MGP_C3HHeJ_G0020910.1 mouse_genomes_project 14 27798640 27898606 - MGP_C3HHeJ_P0038653 Bmpr1a protein_coding protein_coding MGP_C3HHeJ_T0038654.1 MGP_C3HHeJ_G0020910.1 mouse_genomes_project 14 27802392 27850789 - MGP_C3HHeJ_P0038654 Bmpr1a protein_coding protein_coding MGP_C3HHeJ_T0038655.1 MGP_C3HHeJ_G0020910.1 mouse_genomes_project 14 27822833 27899260 - MGP_C3HHeJ_P0038655 Bmpr1a protein_coding protein_coding MGP_C3HHeJ_T0038656.1 MGP_C3HHeJ_G0020910.1 mouse_genomes_project 14 27832439 27897038 - MGP_C3HHeJ_P0038656 Bmpr1a protein_coding protein_coding MGP_C3HHeJ_T0002540.1 MGP_C3HHeJ_G0002450.1 mouse_genomes_project 14 48575967 48576010 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0039307.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50116929 50124216 - MGP_C3HHeJ_P0039307 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039308.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50116929 50124771 - MGP_C3HHeJ_P0039308 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039309.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50116932 50124280 - MGP_C3HHeJ_P0039309 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039310.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50116976 50124319 - MGP_C3HHeJ_P0039310 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039311.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50116980 50124326 - MGP_C3HHeJ_P0039311 Tm9sf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039312.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50117024 50124305 - MGP_C3HHeJ_P0039312 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039313.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50118797 50124488 - MGP_C3HHeJ_P0039313 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039314.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50119265 50122025 - Tm9sf1 protein_coding processed_transcript MGP_C3HHeJ_T0039315.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50121060 50124336 - Tm9sf1 protein_coding retained_intron MGP_C3HHeJ_T0039316.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50121349 50124525 - Tm9sf1 protein_coding processed_transcript MGP_C3HHeJ_T0039317.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50121408 50122564 - Tm9sf1 protein_coding retained_intron MGP_C3HHeJ_T0039318.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50122382 50124736 - MGP_C3HHeJ_P0039318 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0039319.1 MGP_C3HHeJ_G0021101.1 mouse_genomes_project 14 50123548 50124298 - MGP_C3HHeJ_P0039319 Tm9sf1 protein_coding protein_coding MGP_C3HHeJ_T0098920.1 MGP_C3HHeJ_G0037114.1 mouse_genomes_project 14 26983566 26983673 + Gm26228 snRNA snRNA MGP_C3HHeJ_T0002659.1 MGP_C3HHeJ_G0002541.1 mouse_genomes_project 14 48124180 48124347 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0038691.1 MGP_C3HHeJ_G0020923.1 mouse_genomes_project 14 30557891 30570342 - 2610528A11Rik protein_coding processed_transcript MGP_C3HHeJ_T0038692.1 MGP_C3HHeJ_G0020923.1 mouse_genomes_project 14 30557893 30566421 - MGP_C3HHeJ_P0038692 2610528A11Rik protein_coding protein_coding MGP_C3HHeJ_T0039854.1 MGP_C3HHeJ_G0021312.1 mouse_genomes_project 14 70487766 70560996 + MGP_C3HHeJ_P0039854 Siah3 protein_coding protein_coding MGP_C3HHeJ_T0017181.1 MGP_C3HHeJ_G0015035.1 mouse_genomes_project 14 62357039 62368056 - 1700120O09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0039926.1 MGP_C3HHeJ_G0021345.1 mouse_genomes_project 14 74948877 74953415 - MGP_C3HHeJ_P0039926 Pcdh8 protein_coding protein_coding MGP_C3HHeJ_T0039927.1 MGP_C3HHeJ_G0021345.1 mouse_genomes_project 14 74948882 74953415 - MGP_C3HHeJ_P0039927 Pcdh8 protein_coding protein_coding MGP_C3HHeJ_T0039928.1 MGP_C3HHeJ_G0021345.1 mouse_genomes_project 14 74948886 74953415 - Pcdh8 protein_coding retained_intron MGP_C3HHeJ_T0039929.1 MGP_C3HHeJ_G0021345.1 mouse_genomes_project 14 74951134 74953307 - Pcdh8 protein_coding processed_transcript MGP_C3HHeJ_T0012895.1 MGP_C3HHeJ_G0010999.1 mouse_genomes_project 14 69743722 69757421 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039201.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49558704 49566661 - MGP_C3HHeJ_P0039201 Ap1g2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039202.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49558976 49559515 - Ap1g2 protein_coding retained_intron MGP_C3HHeJ_T0039203.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49558976 49566394 - MGP_C3HHeJ_P0039203 Ap1g2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039204.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49558976 49566675 - MGP_C3HHeJ_P0039204 Ap1g2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039205.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49558976 49566720 - MGP_C3HHeJ_P0039205 Ap1g2 protein_coding protein_coding MGP_C3HHeJ_T0039206.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49558981 49566274 - MGP_C3HHeJ_P0039206 Ap1g2 protein_coding protein_coding MGP_C3HHeJ_T0039207.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49559180 49566259 - Ap1g2 protein_coding processed_transcript MGP_C3HHeJ_T0039208.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49560561 49560914 - Ap1g2 protein_coding retained_intron MGP_C3HHeJ_T0039209.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49562476 49564637 - Ap1g2 protein_coding retained_intron MGP_C3HHeJ_T0039210.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49562759 49565018 - Ap1g2 protein_coding retained_intron MGP_C3HHeJ_T0039211.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49565832 49566688 - Ap1g2 protein_coding retained_intron MGP_C3HHeJ_T0039212.1 MGP_C3HHeJ_G0021083.1 mouse_genomes_project 14 49566051 49566635 - Ap1g2 protein_coding processed_transcript MGP_C3HHeJ_T0002479.1 MGP_C3HHeJ_G0002391.1 mouse_genomes_project 14 48581609 48581666 + MGP_C3HHeJ_P0002479 Traj47 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038319.1 MGP_C3HHeJ_G0020817.1 mouse_genomes_project 14 19607969 19608326 + MGP_C3HHeJ_P0038319 Gm2178 protein_coding protein_coding MGP_C3HHeJ_T0039526.1 MGP_C3HHeJ_G0021195.1 mouse_genomes_project 14 57826380 57832501 + MGP_C3HHeJ_P0039526 Defb43 protein_coding protein_coding MGP_C3HHeJ_T0039111.1 MGP_C3HHeJ_G0021054.1 mouse_genomes_project 14 48893114 48897504 + MGP_C3HHeJ_P0039111 Rem2 protein_coding protein_coding MGP_C3HHeJ_T0039112.1 MGP_C3HHeJ_G0021054.1 mouse_genomes_project 14 48893336 48894991 + Rem2 protein_coding retained_intron MGP_C3HHeJ_T0039113.1 MGP_C3HHeJ_G0021054.1 mouse_genomes_project 14 48893348 48896750 + MGP_C3HHeJ_P0039113 Rem2 protein_coding protein_coding MGP_C3HHeJ_T0039114.1 MGP_C3HHeJ_G0021054.1 mouse_genomes_project 14 48894567 48896188 + MGP_C3HHeJ_P0039114 Rem2 protein_coding protein_coding MGP_C3HHeJ_T0039128.1 MGP_C3HHeJ_G0021062.1 mouse_genomes_project 14 49061841 49062292 + MGP_C3HHeJ_P0039128 Gm20726 protein_coding protein_coding MGP_C3HHeJ_T0038035.1 MGP_C3HHeJ_G0020741.1 mouse_genomes_project 14 6681262 6689982 - MGP_C3HHeJ_P0038035 Psmd6 protein_coding protein_coding MGP_C3HHeJ_T0038036.1 MGP_C3HHeJ_G0020741.1 mouse_genomes_project 14 6682990 6685630 - Psmd6 protein_coding retained_intron MGP_C3HHeJ_T0038037.1 MGP_C3HHeJ_G0020741.1 mouse_genomes_project 14 6685274 6686432 - Psmd6 protein_coding retained_intron MGP_C3HHeJ_T0038038.1 MGP_C3HHeJ_G0020741.1 mouse_genomes_project 14 6688708 6689931 - Psmd6 protein_coding retained_intron MGP_C3HHeJ_T0038651.1 MGP_C3HHeJ_G0020909.1 mouse_genomes_project 14 27758973 27791438 + MGP_C3HHeJ_P0038651 Mmrn2 protein_coding protein_coding MGP_C3HHeJ_T0038652.1 MGP_C3HHeJ_G0020909.1 mouse_genomes_project 14 27759084 27790443 + MGP_C3HHeJ_P0038652 Mmrn2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002511.1 MGP_C3HHeJ_G0002423.1 mouse_genomes_project 14 48615780 48615837 + MGP_C3HHeJ_P0002511 Traj13 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038636.1 MGP_C3HHeJ_G0020901.1 mouse_genomes_project 14 27451651 27466183 + MGP_C3HHeJ_P0038636 Anxa8 protein_coding protein_coding MGP_C3HHeJ_T0038637.1 MGP_C3HHeJ_G0020901.1 mouse_genomes_project 14 27451695 27465633 + MGP_C3HHeJ_P0038637 Anxa8 protein_coding protein_coding MGP_C3HHeJ_T0038995.1 MGP_C3HHeJ_G0021030.1 mouse_genomes_project 14 46284819 46286726 - MGP_C3HHeJ_P0038995 Olfr221 protein_coding protein_coding MGP_C3HHeJ_T0038874.1 MGP_C3HHeJ_G0020981.1 mouse_genomes_project 14 44370532 44371483 - Olfr735 protein_coding transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0038875.1 MGP_C3HHeJ_G0020981.1 mouse_genomes_project 14 44370532 44371597 - MGP_C3HHeJ_P0038875 Olfr735 protein_coding protein_coding MGP_C3HHeJ_T0038876.1 MGP_C3HHeJ_G0020981.1 mouse_genomes_project 14 44370935 44375107 - Olfr735 protein_coding processed_transcript MGP_C3HHeJ_T0038585.1 MGP_C3HHeJ_G0020878.1 mouse_genomes_project 14 25611065 25637434 + MGP_C3HHeJ_P0038585 Ogdhl protein_coding unknown_likely_coding MGP_C3HHeJ_T0038586.1 MGP_C3HHeJ_G0020878.1 mouse_genomes_project 14 25611077 25637109 + MGP_C3HHeJ_P0038586 Ogdhl protein_coding protein_coding MGP_C3HHeJ_T0012843.1 MGP_C3HHeJ_G0010947.1 mouse_genomes_project 14 10798028 10798906 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039016.1 MGP_C3HHeJ_G0021033.1 mouse_genomes_project 14 46415283 46451764 - MGP_C3HHeJ_P0039016 Supt16 protein_coding protein_coding MGP_C3HHeJ_T0017153.1 MGP_C3HHeJ_G0015027.1 mouse_genomes_project 14 12369668 12371135 + processed_transcript processed_transcript MGP_C3HHeJ_T0017155.1 MGP_C3HHeJ_G0015027.1 mouse_genomes_project 14 12369775 12372034 + processed_transcript processed_transcript MGP_C3HHeJ_T0006600.1 MGP_C3HHeJ_G0005451.1 mouse_genomes_project 14 39442709 39444584 - A530076I17Rik lincRNA lincRNA MGP_C3HHeJ_T0038927.1 MGP_C3HHeJ_G0021010.1 mouse_genomes_project 14 45175391 45186239 + MGP_C3HHeJ_P0038927 protein_coding protein_coding MGP_C3HHeJ_T0038929.1 MGP_C3HHeJ_G0021010.1 mouse_genomes_project 14 45180118 45186239 + MGP_C3HHeJ_P0038929 protein_coding protein_coding MGP_C3HHeJ_T0098964.1 MGP_C3HHeJ_G0037158.1 mouse_genomes_project 14 115250094 115250194 + Gm23302 snRNA snRNA MGP_C3HHeJ_T0039658.1 MGP_C3HHeJ_G0021245.1 mouse_genomes_project 14 62265657 62464942 + MGP_C3HHeJ_P0039658 Ebf2 protein_coding protein_coding MGP_C3HHeJ_T0039659.1 MGP_C3HHeJ_G0021245.1 mouse_genomes_project 14 62265951 62466083 + MGP_C3HHeJ_P0039659 Ebf2 protein_coding protein_coding MGP_C3HHeJ_T0039660.1 MGP_C3HHeJ_G0021245.1 mouse_genomes_project 14 62265968 62268880 + Ebf2 protein_coding retained_intron MGP_C3HHeJ_T0039661.1 MGP_C3HHeJ_G0021245.1 mouse_genomes_project 14 62267009 62463852 + MGP_C3HHeJ_P0039661 Ebf2 protein_coding protein_coding MGP_C3HHeJ_T0038102.1 MGP_C3HHeJ_G0020761.1 mouse_genomes_project 14 12681028 12694415 - MGP_C3HHeJ_P0038102 2700060E02Rik protein_coding protein_coding MGP_C3HHeJ_T0038869.1 MGP_C3HHeJ_G0020976.1 mouse_genomes_project 14 44205737 44206694 - MGP_C3HHeJ_P0038869 protein_coding protein_coding MGP_C3HHeJ_T0040015.1 MGP_C3HHeJ_G0021373.1 mouse_genomes_project 14 99511498 99615282 + MGP_C3HHeJ_P0040015 Scel protein_coding protein_coding MGP_C3HHeJ_T0038698.1 MGP_C3HHeJ_G0020926.1 mouse_genomes_project 14 34410892 34491049 - MGP_C3HHeJ_P0038698 Sh2d4b protein_coding protein_coding MGP_C3HHeJ_T0039499.1 MGP_C3HHeJ_G0021180.1 mouse_genomes_project 14 55960766 55997420 - MGP_C3HHeJ_P0039499 Sgcg protein_coding protein_coding MGP_C3HHeJ_T0039500.1 MGP_C3HHeJ_G0021180.1 mouse_genomes_project 14 55961151 55997354 - MGP_C3HHeJ_P0039500 Sgcg protein_coding protein_coding MGP_C3HHeJ_T0039501.1 MGP_C3HHeJ_G0021180.1 mouse_genomes_project 14 55962523 55972147 - MGP_C3HHeJ_P0039501 Sgcg protein_coding protein_coding MGP_C3HHeJ_T0012850.1 MGP_C3HHeJ_G0010954.1 mouse_genomes_project 14 15530920 15531292 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039914.1 MGP_C3HHeJ_G0021338.1 mouse_genomes_project 14 74562769 74590246 + MGP_C3HHeJ_P0039914 Mtrf1 protein_coding protein_coding MGP_C3HHeJ_T0040062.1 MGP_C3HHeJ_G0021396.1 mouse_genomes_project 14 115565661 115612915 - MGP_C3HHeJ_P0040062 Dzip1 protein_coding protein_coding MGP_C3HHeJ_T0040063.1 MGP_C3HHeJ_G0021396.1 mouse_genomes_project 14 115566249 115615063 - MGP_C3HHeJ_P0040063 Dzip1 protein_coding protein_coding MGP_C3HHeJ_T0038716.1 MGP_C3HHeJ_G0020934.1 mouse_genomes_project 14 34785303 34799293 - MGP_C3HHeJ_P0038716 Sftpd protein_coding protein_coding MGP_C3HHeJ_T0002558.1 MGP_C3HHeJ_G0002463.1 mouse_genomes_project 14 46844108 46844657 + MGP_C3HHeJ_P0002558 Trav3-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038925.1 MGP_C3HHeJ_G0021008.1 mouse_genomes_project 14 45131159 45131704 - MGP_C3HHeJ_P0038925 Rnase12 protein_coding protein_coding MGP_C3HHeJ_T0040065.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115680832 115704771 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0040066.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115680832 115806802 - MGP_C3HHeJ_P0040066 Uggt2 protein_coding protein_coding MGP_C3HHeJ_T0040067.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115681985 115704531 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0040068.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115682210 115704052 - Uggt2 protein_coding processed_transcript MGP_C3HHeJ_T0040069.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115682607 115704705 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0040070.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115695418 115706369 - Uggt2 protein_coding processed_transcript MGP_C3HHeJ_T0040071.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115699079 115705477 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0040072.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115699245 115704864 - Uggt2 protein_coding processed_transcript MGP_C3HHeJ_T0040073.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115700195 115716779 - MGP_C3HHeJ_P0040073 Uggt2 protein_coding protein_coding MGP_C3HHeJ_T0040074.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115711716 115760264 - MGP_C3HHeJ_P0040074 Uggt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040075.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115711716 115733928 - MGP_C3HHeJ_P0040075 Uggt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040076.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115734055 115738172 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0040077.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115746362 115751749 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0040078.1 MGP_C3HHeJ_G0021398.1 mouse_genomes_project 14 115761878 115806802 - Uggt2 protein_coding retained_intron MGP_C3HHeJ_T0003474.1 MGP_C3HHeJ_G0003161.1 mouse_genomes_project 14 48324714 48351439 - antisense antisense MGP_C3HHeJ_T0003482.1 MGP_C3HHeJ_G0003167.1 mouse_genomes_project 14 49512491 49532524 + Gm20687 antisense antisense MGP_C3HHeJ_T0009894.1 MGP_C3HHeJ_G0008027.1 mouse_genomes_project 14 23781903 23781963 + Mir3076 miRNA miRNA MGP_C3HHeJ_T0039386.1 MGP_C3HHeJ_G0021143.1 mouse_genomes_project 14 51566990 51572998 + MGP_C3HHeJ_P0039386 protein_coding protein_coding MGP_C3HHeJ_T0038262.1 MGP_C3HHeJ_G0020802.1 mouse_genomes_project 14 18728241 18734554 + Ppif protein_coding retained_intron MGP_C3HHeJ_T0038263.1 MGP_C3HHeJ_G0020802.1 mouse_genomes_project 14 18728257 18734558 + MGP_C3HHeJ_P0038263 Ppif protein_coding protein_coding MGP_C3HHeJ_T0040081.1 MGP_C3HHeJ_G0021401.1 mouse_genomes_project 14 117016363 117181431 + MGP_C3HHeJ_P0040081 Mbnl2 protein_coding protein_coding MGP_C3HHeJ_T0040082.1 MGP_C3HHeJ_G0021401.1 mouse_genomes_project 14 117016363 117181431 + MGP_C3HHeJ_P0040082 Mbnl2 protein_coding protein_coding MGP_C3HHeJ_T0100193.1 MGP_C3HHeJ_G0038387.1 mouse_genomes_project 14 50755421 50755547 + Gm24118 snoRNA snoRNA MGP_C3HHeJ_T0002571.1 MGP_C3HHeJ_G0002473.1 mouse_genomes_project 14 47118149 47118680 + MGP_C3HHeJ_P0002571 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039124.1 MGP_C3HHeJ_G0021058.1 mouse_genomes_project 14 49009623 49034897 - MGP_C3HHeJ_P0039124 4931414P19Rik protein_coding protein_coding MGP_C3HHeJ_T0039885.1 MGP_C3HHeJ_G0021324.1 mouse_genomes_project 14 72122529 72135451 - MGP_C3HHeJ_P0039885 Lacc1 protein_coding protein_coding MGP_C3HHeJ_T0039886.1 MGP_C3HHeJ_G0021324.1 mouse_genomes_project 14 72131130 72135714 - Lacc1 protein_coding retained_intron MGP_C3HHeJ_T0039887.1 MGP_C3HHeJ_G0021324.1 mouse_genomes_project 14 72133740 72134872 - MGP_C3HHeJ_P0039887 Lacc1 protein_coding protein_coding MGP_C3HHeJ_T0000900.1 MGP_C3HHeJ_G0000840.1 mouse_genomes_project 14 113350338 113351253 + TEC TEC MGP_C3HHeJ_T0038634.1 MGP_C3HHeJ_G0020899.1 mouse_genomes_project 14 27410807 27468366 - MGP_C3HHeJ_P0038634 A630023A22Rik protein_coding protein_coding MGP_C3HHeJ_T0012912.1 MGP_C3HHeJ_G0011016.1 mouse_genomes_project 14 120596842 120597056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038373.1 MGP_C3HHeJ_G0020839.1 mouse_genomes_project 14 23757501 23758279 + Tkt protein_coding processed_transcript MGP_C3HHeJ_T0038374.1 MGP_C3HHeJ_G0020839.1 mouse_genomes_project 14 23758273 23784477 + MGP_C3HHeJ_P0038374 Tkt protein_coding protein_coding MGP_C3HHeJ_T0038375.1 MGP_C3HHeJ_G0020839.1 mouse_genomes_project 14 23758323 23771459 + Tkt protein_coding retained_intron MGP_C3HHeJ_T0038376.1 MGP_C3HHeJ_G0020839.1 mouse_genomes_project 14 23758353 23769663 + MGP_C3HHeJ_P0038376 Tkt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038377.1 MGP_C3HHeJ_G0020839.1 mouse_genomes_project 14 23779261 23780577 + Tkt protein_coding retained_intron MGP_C3HHeJ_T0098938.1 MGP_C3HHeJ_G0037132.1 mouse_genomes_project 14 56089325 56089429 - Gm25716 snRNA snRNA MGP_C3HHeJ_T0038674.1 MGP_C3HHeJ_G0020916.1 mouse_genomes_project 14 29244287 29246773 - MGP_C3HHeJ_P0038674 4930596D02Rik protein_coding protein_coding MGP_C3HHeJ_T0002582.1 MGP_C3HHeJ_G0002483.1 mouse_genomes_project 14 47672872 47673139 + MGP_C3HHeJ_P0002582 Trav13n-4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038279.1 MGP_C3HHeJ_G0020809.1 mouse_genomes_project 14 18978201 18981638 - MGP_C3HHeJ_P0038279 Tmem254b protein_coding protein_coding MGP_C3HHeJ_T0038280.1 MGP_C3HHeJ_G0020809.1 mouse_genomes_project 14 18978205 18981244 - MGP_C3HHeJ_P0038280 Tmem254b protein_coding protein_coding MGP_C3HHeJ_T0098954.1 MGP_C3HHeJ_G0037148.1 mouse_genomes_project 14 95658234 95658420 - Gm22970 snRNA snRNA MGP_C3HHeJ_T0100190.1 MGP_C3HHeJ_G0038384.1 mouse_genomes_project 14 46464597 46464707 - Snord8 snoRNA snoRNA MGP_C3HHeJ_T0098042.1 MGP_C3HHeJ_G0036254.1 mouse_genomes_project 14 73434541 73434656 - Gm26197 rRNA rRNA MGP_C3HHeJ_T0002594.1 MGP_C3HHeJ_G0002491.1 mouse_genomes_project 14 48221447 48222173 + MGP_C3HHeJ_P0002594 Trav18 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002595.1 MGP_C3HHeJ_G0002491.1 mouse_genomes_project 14 48221447 48222173 + MGP_C3HHeJ_P0002595 Trav18 TR_V_gene TR_V_gene MGP_C3HHeJ_T0098922.1 MGP_C3HHeJ_G0037116.1 mouse_genomes_project 14 33567540 33567704 + Gm25012 snRNA snRNA MGP_C3HHeJ_T0012893.1 MGP_C3HHeJ_G0010997.1 mouse_genomes_project 14 69743720 69757422 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098366.1 MGP_C3HHeJ_G0036574.1 mouse_genomes_project 14 40767373 40772396 + Gm15562 sense_intronic sense_intronic MGP_C3HHeJ_T0039078.1 MGP_C3HHeJ_G0021046.1 mouse_genomes_project 14 48646259 48665481 - MGP_C3HHeJ_P0039078 Dad1 protein_coding protein_coding MGP_C3HHeJ_T0039079.1 MGP_C3HHeJ_G0021046.1 mouse_genomes_project 14 48650423 48665291 - MGP_C3HHeJ_P0039079 Dad1 protein_coding protein_coding MGP_C3HHeJ_T0012882.1 MGP_C3HHeJ_G0010986.1 mouse_genomes_project 14 51319265 51319436 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039839.1 MGP_C3HHeJ_G0021308.1 mouse_genomes_project 14 70093824 70140516 - MGP_C3HHeJ_P0039839 Lrrc63 protein_coding protein_coding MGP_C3HHeJ_T0038850.1 MGP_C3HHeJ_G0020966.1 mouse_genomes_project 14 43175785 43198687 - MGP_C3HHeJ_P0038850 1700011H14Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0038851.1 MGP_C3HHeJ_G0020966.1 mouse_genomes_project 14 43179657 43198858 - MGP_C3HHeJ_P0038851 1700011H14Rik protein_coding protein_coding MGP_C3HHeJ_T0038852.1 MGP_C3HHeJ_G0020966.1 mouse_genomes_project 14 43179891 43198827 - MGP_C3HHeJ_P0038852 1700011H14Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038853.1 MGP_C3HHeJ_G0020966.1 mouse_genomes_project 14 43186111 43198827 - MGP_C3HHeJ_P0038853 1700011H14Rik protein_coding protein_coding MGP_C3HHeJ_T0012842.1 MGP_C3HHeJ_G0010946.1 mouse_genomes_project 14 5896321 5896453 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038650.1 MGP_C3HHeJ_G0020908.1 mouse_genomes_project 14 27753743 27758259 - MGP_C3HHeJ_P0038650 Sncg protein_coding protein_coding MGP_C3HHeJ_T0039644.1 MGP_C3HHeJ_G0021241.1 mouse_genomes_project 14 61885510 61887654 + MGP_C3HHeJ_P0039644 Gm5464 protein_coding protein_coding MGP_C3HHeJ_T0038186.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681273 14689780 - MGP_C3HHeJ_P0038186 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038187.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681274 14696924 - MGP_C3HHeJ_P0038187 Dusp13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038188.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681274 14689823 - MGP_C3HHeJ_P0038188 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038189.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681274 14688705 - MGP_C3HHeJ_P0038189 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038190.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681274 14691183 - MGP_C3HHeJ_P0038190 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038191.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681274 14696926 - MGP_C3HHeJ_P0038191 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038192.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681274 14689809 - MGP_C3HHeJ_P0038192 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038193.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681277 14696946 - MGP_C3HHeJ_P0038193 Dusp13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038194.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681468 14696924 - MGP_C3HHeJ_P0038194 Dusp13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038195.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14681528 14696930 - MGP_C3HHeJ_P0038195 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038196.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14688438 14696930 - Dusp13 protein_coding processed_transcript MGP_C3HHeJ_T0038197.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14688447 14694789 - MGP_C3HHeJ_P0038197 Dusp13 protein_coding protein_coding MGP_C3HHeJ_T0038198.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14691815 14696942 - MGP_C3HHeJ_P0038198 Dusp13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038199.1 MGP_C3HHeJ_G0020790.1 mouse_genomes_project 14 14693177 14699485 - Dusp13 protein_coding processed_transcript MGP_C3HHeJ_T0040054.1 MGP_C3HHeJ_G0021391.1 mouse_genomes_project 14 114788823 114814530 + MGP_C3HHeJ_P0040054 Gpr180 protein_coding protein_coding MGP_C3HHeJ_T0039916.1 MGP_C3HHeJ_G0021340.1 mouse_genomes_project 14 74620037 74623831 + MGP_C3HHeJ_P0039916 Kbtbd6 protein_coding protein_coding MGP_C3HHeJ_T0012861.1 MGP_C3HHeJ_G0010965.1 mouse_genomes_project 14 26204977 26205988 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009886.1 MGP_C3HHeJ_G0008019.1 mouse_genomes_project 14 13611984 13612053 + Mir6946 miRNA miRNA MGP_C3HHeJ_T0038044.1 MGP_C3HHeJ_G0020745.1 mouse_genomes_project 14 6963815 6964915 + MGP_C3HHeJ_P0038044 Olfr721-ps1 protein_coding protein_coding MGP_C3HHeJ_T0038045.1 MGP_C3HHeJ_G0020745.1 mouse_genomes_project 14 6963940 6964915 + MGP_C3HHeJ_P0038045 Olfr721-ps1 protein_coding protein_coding MGP_C3HHeJ_T0038333.1 MGP_C3HHeJ_G0020822.1 mouse_genomes_project 14 19991379 20012253 + MGP_C3HHeJ_P0038333 Asb14 protein_coding protein_coding MGP_C3HHeJ_T0038334.1 MGP_C3HHeJ_G0020822.1 mouse_genomes_project 14 19991424 20011413 + MGP_C3HHeJ_P0038334 Asb14 protein_coding protein_coding MGP_C3HHeJ_T0038335.1 MGP_C3HHeJ_G0020822.1 mouse_genomes_project 14 19991434 19997718 + Asb14 protein_coding processed_transcript MGP_C3HHeJ_T0038336.1 MGP_C3HHeJ_G0020822.1 mouse_genomes_project 14 19991442 19999918 + MGP_C3HHeJ_P0038336 Asb14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038337.1 MGP_C3HHeJ_G0020822.1 mouse_genomes_project 14 19999867 20012254 + MGP_C3HHeJ_P0038337 Asb14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038030.1 MGP_C3HHeJ_G0020737.1 mouse_genomes_project 14 6207986 6220203 + MGP_C3HHeJ_P0038030 Sntn protein_coding protein_coding MGP_C3HHeJ_T0038547.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366463 25373273 + MGP_C3HHeJ_P0038547 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038548.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366465 25378141 + MGP_C3HHeJ_P0038548 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038549.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366502 25385680 + MGP_C3HHeJ_P0038549 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038550.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366876 25381228 + MGP_C3HHeJ_P0038550 Oxnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038551.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366900 25385680 + MGP_C3HHeJ_P0038551 Oxnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038552.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366915 25381097 + MGP_C3HHeJ_P0038552 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038553.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366923 25381639 + Oxnad1 protein_coding retained_intron MGP_C3HHeJ_T0038554.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366923 25378221 + MGP_C3HHeJ_P0038554 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038555.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25366966 25378181 + MGP_C3HHeJ_P0038555 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038556.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25376995 25385133 + MGP_C3HHeJ_P0038556 Oxnad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038557.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25377058 25385330 + MGP_C3HHeJ_P0038557 Oxnad1 protein_coding protein_coding MGP_C3HHeJ_T0038558.1 MGP_C3HHeJ_G0020872.1 mouse_genomes_project 14 25382414 25384760 + Oxnad1 protein_coding retained_intron MGP_C3HHeJ_T0098917.1 MGP_C3HHeJ_G0037111.1 mouse_genomes_project 14 14387875 14387967 + Gm25864 snRNA snRNA MGP_C3HHeJ_T0006580.1 MGP_C3HHeJ_G0005438.1 mouse_genomes_project 14 17679813 17683937 + 4931403M11Rik lincRNA lincRNA MGP_C3HHeJ_T0039694.1 MGP_C3HHeJ_G0021263.1 mouse_genomes_project 14 64415717 64444111 + MGP_C3HHeJ_P0039694 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039698.1 MGP_C3HHeJ_G0021263.1 mouse_genomes_project 14 64426124 64444111 + MGP_C3HHeJ_P0039698 protein_coding protein_coding MGP_C3HHeJ_T0038763.1 MGP_C3HHeJ_G0020950.1 mouse_genomes_project 14 40625135 40646915 + MGP_C3HHeJ_P0038763 Cgrrf1 protein_coding protein_coding MGP_C3HHeJ_T0038764.1 MGP_C3HHeJ_G0020950.1 mouse_genomes_project 14 40625220 40633392 + Cgrrf1 protein_coding retained_intron MGP_C3HHeJ_T0038765.1 MGP_C3HHeJ_G0020950.1 mouse_genomes_project 14 40625230 40639366 + Cgrrf1 protein_coding retained_intron MGP_C3HHeJ_T0038766.1 MGP_C3HHeJ_G0020950.1 mouse_genomes_project 14 40625245 40640827 + Cgrrf1 protein_coding retained_intron MGP_C3HHeJ_T0040105.1 MGP_C3HHeJ_G0021415.1 mouse_genomes_project 14 119350234 119354652 + MGP_C3HHeJ_P0040105 Zic2 protein_coding protein_coding MGP_C3HHeJ_T0040106.1 MGP_C3HHeJ_G0021415.1 mouse_genomes_project 14 119352899 119353850 + Zic2 protein_coding retained_intron MGP_C3HHeJ_T0000891.1 MGP_C3HHeJ_G0000831.1 mouse_genomes_project 14 64362923 64364420 + TEC TEC MGP_C3HHeJ_T0002507.1 MGP_C3HHeJ_G0002419.1 mouse_genomes_project 14 48610721 48610787 + MGP_C3HHeJ_P0002507 Traj18 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039921.1 MGP_C3HHeJ_G0021344.1 mouse_genomes_project 14 74817460 74841850 - MGP_C3HHeJ_P0039921 Lect1 protein_coding protein_coding MGP_C3HHeJ_T0039922.1 MGP_C3HHeJ_G0021344.1 mouse_genomes_project 14 74817463 74841936 - MGP_C3HHeJ_P0039922 Lect1 protein_coding protein_coding MGP_C3HHeJ_T0039923.1 MGP_C3HHeJ_G0021344.1 mouse_genomes_project 14 74817586 74821966 - Lect1 protein_coding retained_intron MGP_C3HHeJ_T0039924.1 MGP_C3HHeJ_G0021344.1 mouse_genomes_project 14 74821247 74825281 - Lect1 protein_coding processed_transcript MGP_C3HHeJ_T0039925.1 MGP_C3HHeJ_G0021344.1 mouse_genomes_project 14 74821757 74825429 - Lect1 protein_coding retained_intron MGP_C3HHeJ_T0039115.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48932517 48943033 - MGP_C3HHeJ_P0039115 Prmt5 protein_coding protein_coding MGP_C3HHeJ_T0039116.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48936434 48938969 - MGP_C3HHeJ_P0039116 Prmt5 protein_coding protein_coding MGP_C3HHeJ_T0039117.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48936639 48942943 - MGP_C3HHeJ_P0039117 Prmt5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039118.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48938885 48942901 - Prmt5 protein_coding retained_intron MGP_C3HHeJ_T0039119.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48939450 48942978 - Prmt5 protein_coding retained_intron MGP_C3HHeJ_T0039120.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48940103 48941166 - Prmt5 protein_coding processed_transcript MGP_C3HHeJ_T0039121.1 MGP_C3HHeJ_G0021055.1 mouse_genomes_project 14 48941658 48942869 - Prmt5 protein_coding processed_transcript MGP_C3HHeJ_T0038569.1 MGP_C3HHeJ_G0020875.1 mouse_genomes_project 14 25458559 25465440 + MGP_C3HHeJ_P0038569 protein_coding protein_coding MGP_C3HHeJ_T0002600.1 MGP_C3HHeJ_G0002495.1 mouse_genomes_project 14 48340048 48340636 + MGP_C3HHeJ_P0002600 Trdv2-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002601.1 MGP_C3HHeJ_G0002495.1 mouse_genomes_project 14 48340048 48340636 + MGP_C3HHeJ_P0002601 Trdv2-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002505.1 MGP_C3HHeJ_G0002417.1 mouse_genomes_project 14 48609347 48609405 + MGP_C3HHeJ_P0002505 Traj20 TR_J_gene TR_J_gene MGP_C3HHeJ_T0040096.1 MGP_C3HHeJ_G0021408.1 mouse_genomes_project 14 118718219 118860971 + MGP_C3HHeJ_P0040096 Ubac2 protein_coding protein_coding MGP_C3HHeJ_T0039328.1 MGP_C3HHeJ_G0021107.1 mouse_genomes_project 14 50185802 50199282 - MGP_C3HHeJ_P0039328 Tgm1 protein_coding protein_coding MGP_C3HHeJ_T0039329.1 MGP_C3HHeJ_G0021107.1 mouse_genomes_project 14 50185802 50199282 - MGP_C3HHeJ_P0039329 Tgm1 protein_coding protein_coding MGP_C3HHeJ_T0039330.1 MGP_C3HHeJ_G0021107.1 mouse_genomes_project 14 50185802 50198878 - MGP_C3HHeJ_P0039330 Tgm1 protein_coding protein_coding MGP_C3HHeJ_T0039852.1 MGP_C3HHeJ_G0021311.1 mouse_genomes_project 14 70305626 70368224 + MGP_C3HHeJ_P0039852 Zc3h13 protein_coding protein_coding MGP_C3HHeJ_T0039853.1 MGP_C3HHeJ_G0021311.1 mouse_genomes_project 14 70305631 70368232 + MGP_C3HHeJ_P0039853 Zc3h13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039358.1 MGP_C3HHeJ_G0021124.1 mouse_genomes_project 14 50582564 50585991 - MGP_C3HHeJ_P0039358 Mcpt4 protein_coding protein_coding MGP_C3HHeJ_T0098921.1 MGP_C3HHeJ_G0037115.1 mouse_genomes_project 14 30224016 30224122 + Gm25204 snRNA snRNA MGP_C3HHeJ_T0038588.1 MGP_C3HHeJ_G0020880.1 mouse_genomes_project 14 25701117 25761125 - MGP_C3HHeJ_P0038588 Chat protein_coding protein_coding MGP_C3HHeJ_T0006577.1 MGP_C3HHeJ_G0005436.1 mouse_genomes_project 14 16305461 16306814 - A830039N20Rik lincRNA lincRNA MGP_C3HHeJ_T0006576.1 MGP_C3HHeJ_G0005435.1 mouse_genomes_project 14 13608651 13624378 - 6230400D17Rik lincRNA lincRNA MGP_C3HHeJ_T0039714.1 MGP_C3HHeJ_G0021269.1 mouse_genomes_project 14 64705228 64928815 + MGP_C3HHeJ_P0039714 Pebp4 protein_coding protein_coding MGP_C3HHeJ_T0098037.1 MGP_C3HHeJ_G0036249.1 mouse_genomes_project 14 57678604 57678723 + n-R5s47 rRNA rRNA MGP_C3HHeJ_T0012863.1 MGP_C3HHeJ_G0010967.1 mouse_genomes_project 14 34147256 34148259 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040119.1 MGP_C3HHeJ_G0021418.1 mouse_genomes_project 14 119705272 119803338 - MGP_C3HHeJ_P0040119 Ggact protein_coding protein_coding MGP_C3HHeJ_T0040122.1 MGP_C3HHeJ_G0021418.1 mouse_genomes_project 14 119779928 119803380 - MGP_C3HHeJ_P0040122 Ggact protein_coding protein_coding MGP_C3HHeJ_T0040123.1 MGP_C3HHeJ_G0021418.1 mouse_genomes_project 14 119779939 119780774 - MGP_C3HHeJ_P0040123 Ggact protein_coding protein_coding MGP_C3HHeJ_T0040124.1 MGP_C3HHeJ_G0021418.1 mouse_genomes_project 14 119780503 119803975 - MGP_C3HHeJ_P0040124 Ggact protein_coding protein_coding MGP_C3HHeJ_T0040125.1 MGP_C3HHeJ_G0021418.1 mouse_genomes_project 14 119780552 119803303 - MGP_C3HHeJ_P0040125 Ggact protein_coding protein_coding MGP_C3HHeJ_T0002498.1 MGP_C3HHeJ_G0002410.1 mouse_genomes_project 14 48602131 48602190 + MGP_C3HHeJ_P0002498 Traj27 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039167.1 MGP_C3HHeJ_G0021070.1 mouse_genomes_project 14 49339011 49343846 + MGP_C3HHeJ_P0039167 Bcl2l2 protein_coding protein_coding MGP_C3HHeJ_T0039168.1 MGP_C3HHeJ_G0021070.1 mouse_genomes_project 14 49339015 49339692 + Bcl2l2 protein_coding retained_intron MGP_C3HHeJ_T0039170.1 MGP_C3HHeJ_G0021070.1 mouse_genomes_project 14 49339090 49341164 + MGP_C3HHeJ_P0039170 Bcl2l2 protein_coding protein_coding MGP_C3HHeJ_T0039171.1 MGP_C3HHeJ_G0021070.1 mouse_genomes_project 14 49339141 49343707 + MGP_C3HHeJ_P0039171 Bcl2l2 protein_coding protein_coding MGP_C3HHeJ_T0009940.1 MGP_C3HHeJ_G0008073.1 mouse_genomes_project 14 115257426 115257530 - Mir6391 miRNA miRNA MGP_C3HHeJ_T0012883.1 MGP_C3HHeJ_G0010987.1 mouse_genomes_project 14 52021716 52022509 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038278.1 MGP_C3HHeJ_G0020808.1 mouse_genomes_project 14 18978035 18981708 - MGP_C3HHeJ_P0038278 Tmem254c protein_coding protein_coding MGP_C3HHeJ_T0038281.1 MGP_C3HHeJ_G0020808.1 mouse_genomes_project 14 18978205 18981286 - MGP_C3HHeJ_P0038281 Tmem254c protein_coding protein_coding MGP_C3HHeJ_T0038282.1 MGP_C3HHeJ_G0020808.1 mouse_genomes_project 14 18978785 18981679 - MGP_C3HHeJ_P0038282 Tmem254c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038283.1 MGP_C3HHeJ_G0020808.1 mouse_genomes_project 14 18978792 18979824 - Tmem254c protein_coding retained_intron MGP_C3HHeJ_T0038514.1 MGP_C3HHeJ_G0020866.1 mouse_genomes_project 14 24774121 24830107 - MGP_C3HHeJ_P0038514 Colq protein_coding protein_coding MGP_C3HHeJ_T0038515.1 MGP_C3HHeJ_G0020866.1 mouse_genomes_project 14 24774126 24829986 - MGP_C3HHeJ_P0038515 Colq protein_coding unknown_likely_coding MGP_C3HHeJ_T0038516.1 MGP_C3HHeJ_G0020866.1 mouse_genomes_project 14 24774199 24809962 - MGP_C3HHeJ_P0038516 Colq protein_coding protein_coding MGP_C3HHeJ_T0038518.1 MGP_C3HHeJ_G0020866.1 mouse_genomes_project 14 24804638 24844072 - MGP_C3HHeJ_P0038518 Colq protein_coding protein_coding MGP_C3HHeJ_T0038519.1 MGP_C3HHeJ_G0020866.1 mouse_genomes_project 14 24831106 24844048 - Colq protein_coding processed_transcript MGP_C3HHeJ_T0038520.1 MGP_C3HHeJ_G0020866.1 mouse_genomes_project 14 24839501 24844037 - Colq protein_coding processed_transcript MGP_C3HHeJ_T0039158.1 MGP_C3HHeJ_G0021067.1 mouse_genomes_project 14 49157614 49218597 - MGP_C3HHeJ_P0039158 Slc7a8 protein_coding protein_coding MGP_C3HHeJ_T0002499.1 MGP_C3HHeJ_G0002411.1 mouse_genomes_project 14 48604346 48604406 + MGP_C3HHeJ_P0002499 Traj26 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039163.1 MGP_C3HHeJ_G0021069.1 mouse_genomes_project 14 49322560 49325757 - Ppp1r3e protein_coding processed_transcript MGP_C3HHeJ_T0039164.1 MGP_C3HHeJ_G0021069.1 mouse_genomes_project 14 49322572 49330053 - MGP_C3HHeJ_P0039164 Ppp1r3e protein_coding protein_coding MGP_C3HHeJ_T0039165.1 MGP_C3HHeJ_G0021069.1 mouse_genomes_project 14 49328097 49329124 - Ppp1r3e protein_coding TEC MGP_C3HHeJ_T0039166.1 MGP_C3HHeJ_G0021069.1 mouse_genomes_project 14 49328097 49330041 - MGP_C3HHeJ_P0039166 Ppp1r3e protein_coding protein_coding MGP_C3HHeJ_T0039717.1 MGP_C3HHeJ_G0021272.1 mouse_genomes_project 14 65013893 65029528 - MGP_C3HHeJ_P0039717 Ccar2 protein_coding protein_coding MGP_C3HHeJ_T0038824.1 MGP_C3HHeJ_G0020960.1 mouse_genomes_project 14 42017147 42164912 + MGP_C3HHeJ_P0038824 Peli2 protein_coding protein_coding MGP_C3HHeJ_T0002560.1 MGP_C3HHeJ_G0002465.1 mouse_genomes_project 14 46886681 46887126 + MGP_C3HHeJ_P0002560 Trav6-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0097862.1 MGP_C3HHeJ_G0036074.1 mouse_genomes_project 14 98954241 98958550 - pseudogene pseudogene MGP_C3HHeJ_T0038419.1 MGP_C3HHeJ_G0020847.1 mouse_genomes_project 14 24152938 24168777 - MGP_C3HHeJ_P0038419 Itih1 protein_coding protein_coding MGP_C3HHeJ_T0038420.1 MGP_C3HHeJ_G0020847.1 mouse_genomes_project 14 24152938 24168765 - MGP_C3HHeJ_P0038420 Itih1 protein_coding protein_coding MGP_C3HHeJ_T0038421.1 MGP_C3HHeJ_G0020847.1 mouse_genomes_project 14 24168177 24168774 - Itih1 protein_coding retained_intron MGP_C3HHeJ_T0038926.1 MGP_C3HHeJ_G0021009.1 mouse_genomes_project 14 45144836 45145968 - MGP_C3HHeJ_P0038926 Olfr750 protein_coding protein_coding MGP_C3HHeJ_T0039676.1 MGP_C3HHeJ_G0021250.1 mouse_genomes_project 14 63146447 63192396 - MGP_C3HHeJ_P0039676 Nefm protein_coding protein_coding MGP_C3HHeJ_T0039678.1 MGP_C3HHeJ_G0021250.1 mouse_genomes_project 14 63186826 63192396 - MGP_C3HHeJ_P0039678 Nefm protein_coding protein_coding MGP_C3HHeJ_T0038632.1 MGP_C3HHeJ_G0020897.1 mouse_genomes_project 14 27329006 27340625 - MGP_C3HHeJ_P0038632 Zfp488 protein_coding protein_coding MGP_C3HHeJ_T0100206.1 MGP_C3HHeJ_G0038400.1 mouse_genomes_project 14 71018070 71018204 - Gm25517 snoRNA snoRNA MGP_C3HHeJ_T0038893.1 MGP_C3HHeJ_G0020996.1 mouse_genomes_project 14 44855197 44861604 - MGP_C3HHeJ_P0038893 Ccnb1ip1 protein_coding protein_coding MGP_C3HHeJ_T0002504.1 MGP_C3HHeJ_G0002416.1 mouse_genomes_project 14 48608696 48608753 + MGP_C3HHeJ_P0002504 Traj21 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039943.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 88642436 89546583 - MGP_C3HHeJ_P0039943 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0039944.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 88642728 89546583 - MGP_C3HHeJ_P0039944 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0039945.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 88643002 89546543 - MGP_C3HHeJ_P0039945 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0039946.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 88643229 89546072 - MGP_C3HHeJ_P0039946 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0039947.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 88644543 89544653 - MGP_C3HHeJ_P0039947 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0039948.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 88811784 89541669 - MGP_C3HHeJ_P0039948 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0039949.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 89541480 89542145 - Pcdh9 protein_coding retained_intron MGP_C3HHeJ_T0039950.1 MGP_C3HHeJ_G0021352.1 mouse_genomes_project 14 89542033 89546593 - MGP_C3HHeJ_P0039950 Pcdh9 protein_coding protein_coding MGP_C3HHeJ_T0040024.1 MGP_C3HHeJ_G0021377.1 mouse_genomes_project 14 100513276 100558990 - MGP_C3HHeJ_P0040024 Rnf219 protein_coding protein_coding MGP_C3HHeJ_T0003497.1 MGP_C3HHeJ_G0003178.1 mouse_genomes_project 14 58983376 58986827 - Gm17116 antisense antisense MGP_C3HHeJ_T0002577.1 MGP_C3HHeJ_G0002478.1 mouse_genomes_project 14 47397714 47398146 + MGP_C3HHeJ_P0002577 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038959.1 MGP_C3HHeJ_G0021023.1 mouse_genomes_project 14 46142489 46145508 + Slc39a2 protein_coding retained_intron MGP_C3HHeJ_T0038960.1 MGP_C3HHeJ_G0021023.1 mouse_genomes_project 14 46143316 46146447 + MGP_C3HHeJ_P0038960 Slc39a2 protein_coding protein_coding MGP_C3HHeJ_T0038961.1 MGP_C3HHeJ_G0021023.1 mouse_genomes_project 14 46143363 46145501 + MGP_C3HHeJ_P0038961 Slc39a2 protein_coding protein_coding MGP_C3HHeJ_T0038873.1 MGP_C3HHeJ_G0020980.1 mouse_genomes_project 14 44337128 44338161 - MGP_C3HHeJ_P0038873 Olfr734 protein_coding protein_coding MGP_C3HHeJ_T0002559.1 MGP_C3HHeJ_G0002464.1 mouse_genomes_project 14 46870982 46871499 + MGP_C3HHeJ_P0002559 Trav5-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0009937.1 MGP_C3HHeJ_G0008070.1 mouse_genomes_project 14 111608611 111608691 + Mir92-1 miRNA miRNA MGP_C3HHeJ_T0040057.1 MGP_C3HHeJ_G0021394.1 mouse_genomes_project 14 115140870 115390043 - MGP_C3HHeJ_P0040057 Abcc4 protein_coding protein_coding MGP_C3HHeJ_T0040058.1 MGP_C3HHeJ_G0021394.1 mouse_genomes_project 14 115140870 115390043 - MGP_C3HHeJ_P0040058 Abcc4 protein_coding protein_coding MGP_C3HHeJ_T0038139.1 MGP_C3HHeJ_G0020775.1 mouse_genomes_project 14 13465274 13538625 - MGP_C3HHeJ_P0038139 Usp54 protein_coding protein_coding MGP_C3HHeJ_T0038140.1 MGP_C3HHeJ_G0020775.1 mouse_genomes_project 14 13465274 13527515 - MGP_C3HHeJ_P0038140 Usp54 protein_coding protein_coding MGP_C3HHeJ_T0038141.1 MGP_C3HHeJ_G0020775.1 mouse_genomes_project 14 13494170 13503051 - MGP_C3HHeJ_P0038141 Usp54 protein_coding protein_coding MGP_C3HHeJ_T0038142.1 MGP_C3HHeJ_G0020775.1 mouse_genomes_project 14 13498159 13525617 - Usp54 protein_coding retained_intron MGP_C3HHeJ_T0038143.1 MGP_C3HHeJ_G0020775.1 mouse_genomes_project 14 13500215 13538625 - Usp54 protein_coding retained_intron MGP_C3HHeJ_T0100192.1 MGP_C3HHeJ_G0038386.1 mouse_genomes_project 14 49629756 49629888 - Gm23596 snoRNA snoRNA MGP_C3HHeJ_T0039384.1 MGP_C3HHeJ_G0021141.1 mouse_genomes_project 14 51322341 51340210 - MGP_C3HHeJ_P0039384 Zmym5 protein_coding protein_coding MGP_C3HHeJ_T0039865.1 MGP_C3HHeJ_G0021319.1 mouse_genomes_project 14 71000245 71010464 + MGP_C3HHeJ_P0039865 Kctd4 protein_coding protein_coding MGP_C3HHeJ_T0038041.1 MGP_C3HHeJ_G0020743.1 mouse_genomes_project 14 6882801 6888941 + MGP_C3HHeJ_P0038041 Olfr31 protein_coding protein_coding MGP_C3HHeJ_T0038042.1 MGP_C3HHeJ_G0020743.1 mouse_genomes_project 14 6887987 6888941 + MGP_C3HHeJ_P0038042 Olfr31 protein_coding protein_coding MGP_C3HHeJ_T0098036.1 MGP_C3HHeJ_G0036248.1 mouse_genomes_project 14 30308247 30308363 - n-R5s46 rRNA rRNA MGP_C3HHeJ_T0038059.1 MGP_C3HHeJ_G0020750.1 mouse_genomes_project 14 8952910 9017578 + MGP_C3HHeJ_P0038059 Ngly1 protein_coding protein_coding MGP_C3HHeJ_T0038060.1 MGP_C3HHeJ_G0020750.1 mouse_genomes_project 14 8952957 8989212 + Ngly1 protein_coding retained_intron MGP_C3HHeJ_T0038061.1 MGP_C3HHeJ_G0020750.1 mouse_genomes_project 14 8986888 8989335 + Ngly1 protein_coding retained_intron MGP_C3HHeJ_T0039864.1 MGP_C3HHeJ_G0021318.1 mouse_genomes_project 14 70942611 71056437 - MGP_C3HHeJ_P0039864 Gtf2f2 protein_coding protein_coding MGP_C3HHeJ_T0038251.1 MGP_C3HHeJ_G0020799.1 mouse_genomes_project 14 17502850 17543724 - MGP_C3HHeJ_P0038251 Polr3a protein_coding protein_coding MGP_C3HHeJ_T0039780.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67488823 67648506 - MGP_C3HHeJ_P0039780 Fndc3a protein_coding protein_coding MGP_C3HHeJ_T0039781.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67490406 67555306 - MGP_C3HHeJ_P0039781 Fndc3a protein_coding protein_coding MGP_C3HHeJ_T0039782.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67514612 67517848 - Fndc3a protein_coding retained_intron MGP_C3HHeJ_T0039783.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67517871 67670590 - MGP_C3HHeJ_P0039783 Fndc3a protein_coding protein_coding MGP_C3HHeJ_T0039784.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67527693 67605171 - MGP_C3HHeJ_P0039784 Fndc3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039785.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67550718 67671045 - Fndc3a protein_coding retained_intron MGP_C3HHeJ_T0039786.1 MGP_C3HHeJ_G0021294.1 mouse_genomes_project 14 67602341 67670891 - Fndc3a protein_coding retained_intron MGP_C3HHeJ_T0098934.1 MGP_C3HHeJ_G0037128.1 mouse_genomes_project 14 50165322 50165406 - Gm25887 snRNA snRNA MGP_C3HHeJ_T0038303.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19502740 19629005 - MGP_C3HHeJ_P0038303 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038304.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19502745 19566372 - MGP_C3HHeJ_P0038304 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038305.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19502746 19552610 - MGP_C3HHeJ_P0038305 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038306.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19502747 19627814 - MGP_C3HHeJ_P0038306 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038307.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19502972 19627692 - MGP_C3HHeJ_P0038307 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038308.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19502972 19627692 - MGP_C3HHeJ_P0038308 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038309.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19503868 19628969 - MGP_C3HHeJ_P0038309 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038310.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19504302 19552597 - MGP_C3HHeJ_P0038310 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038311.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19512029 19533447 - MGP_C3HHeJ_P0038311 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038312.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19516824 19533278 - Slmap protein_coding processed_transcript MGP_C3HHeJ_T0038313.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19516900 19519677 - Slmap protein_coding retained_intron MGP_C3HHeJ_T0038314.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19517123 19533513 - MGP_C3HHeJ_P0038314 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038315.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19517849 19529844 - Slmap protein_coding retained_intron MGP_C3HHeJ_T0038316.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19527782 19533361 - Slmap protein_coding retained_intron MGP_C3HHeJ_T0038317.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19533246 19556119 - MGP_C3HHeJ_P0038317 Slmap protein_coding protein_coding MGP_C3HHeJ_T0038318.1 MGP_C3HHeJ_G0020816.1 mouse_genomes_project 14 19552224 19556110 - Slmap protein_coding retained_intron MGP_C3HHeJ_T0002663.1 MGP_C3HHeJ_G0002545.1 mouse_genomes_project 14 48400648 48400951 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0039901.1 MGP_C3HHeJ_G0021332.1 mouse_genomes_project 14 73627356 73672984 - MGP_C3HHeJ_P0039901 Akap11 protein_coding protein_coding MGP_C3HHeJ_T0039902.1 MGP_C3HHeJ_G0021332.1 mouse_genomes_project 14 73627356 73673036 - MGP_C3HHeJ_P0039902 Akap11 protein_coding protein_coding MGP_C3HHeJ_T0039338.1 MGP_C3HHeJ_G0021110.1 mouse_genomes_project 14 50231439 50241247 + MGP_C3HHeJ_P0039338 Nop9 protein_coding protein_coding MGP_C3HHeJ_T0017177.1 MGP_C3HHeJ_G0015033.1 mouse_genomes_project 14 61274017 61276061 - 1700001G11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017178.1 MGP_C3HHeJ_G0015033.1 mouse_genomes_project 14 61274018 61275872 - 1700001G11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017179.1 MGP_C3HHeJ_G0015033.1 mouse_genomes_project 14 61274178 61275815 - 1700001G11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012845.1 MGP_C3HHeJ_G0010949.1 mouse_genomes_project 14 11415079 11418781 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038402.1 MGP_C3HHeJ_G0020843.1 mouse_genomes_project 14 24048950 24101283 + MGP_C3HHeJ_P0038402 Tmem110 protein_coding protein_coding MGP_C3HHeJ_T0038403.1 MGP_C3HHeJ_G0020843.1 mouse_genomes_project 14 24048954 24098867 + MGP_C3HHeJ_P0038403 Tmem110 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038404.1 MGP_C3HHeJ_G0020843.1 mouse_genomes_project 14 24090737 24099261 + Tmem110 protein_coding processed_transcript MGP_C3HHeJ_T0038405.1 MGP_C3HHeJ_G0020843.1 mouse_genomes_project 14 24094803 24096849 + Tmem110 protein_coding retained_intron MGP_C3HHeJ_T0038406.1 MGP_C3HHeJ_G0020843.1 mouse_genomes_project 14 24096651 24099297 + Tmem110 protein_coding retained_intron MGP_C3HHeJ_T0006636.1 MGP_C3HHeJ_G0005477.1 mouse_genomes_project 14 64596739 64612399 + 4930480K23Rik lincRNA lincRNA MGP_C3HHeJ_T0006637.1 MGP_C3HHeJ_G0005477.1 mouse_genomes_project 14 64596789 64630286 + 4930480K23Rik lincRNA lincRNA MGP_C3HHeJ_T0038112.1 MGP_C3HHeJ_G0020766.1 mouse_genomes_project 14 13206193 13224533 + MGP_C3HHeJ_P0038112 Nudt13 protein_coding unknown_likely_coding MGP_C3HHeJ_T0098945.1 MGP_C3HHeJ_G0037139.1 mouse_genomes_project 14 81711431 81711521 - Gm23926 snRNA snRNA MGP_C3HHeJ_T0039513.1 MGP_C3HHeJ_G0021188.1 mouse_genomes_project 14 57172888 57240832 - MGP_C3HHeJ_P0039513 Gucy1b2 protein_coding protein_coding MGP_C3HHeJ_T0039514.1 MGP_C3HHeJ_G0021188.1 mouse_genomes_project 14 57173003 57240829 - MGP_C3HHeJ_P0039514 Gucy1b2 protein_coding protein_coding MGP_C3HHeJ_T0039515.1 MGP_C3HHeJ_G0021188.1 mouse_genomes_project 14 57201219 57239335 - MGP_C3HHeJ_P0039515 Gucy1b2 protein_coding protein_coding MGP_C3HHeJ_T0002543.1 MGP_C3HHeJ_G0002453.1 mouse_genomes_project 14 48619970 48620007 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0038776.1 MGP_C3HHeJ_G0020953.1 mouse_genomes_project 14 41064407 41107791 - MGP_C3HHeJ_P0038776 Wdhd1 protein_coding protein_coding MGP_C3HHeJ_T0038777.1 MGP_C3HHeJ_G0020953.1 mouse_genomes_project 14 41064407 41107749 - MGP_C3HHeJ_P0038777 Wdhd1 protein_coding protein_coding MGP_C3HHeJ_T0038778.1 MGP_C3HHeJ_G0020953.1 mouse_genomes_project 14 41064408 41107816 - MGP_C3HHeJ_P0038778 Wdhd1 protein_coding protein_coding MGP_C3HHeJ_T0038779.1 MGP_C3HHeJ_G0020953.1 mouse_genomes_project 14 41087506 41107791 - MGP_C3HHeJ_P0038779 Wdhd1 protein_coding protein_coding MGP_C3HHeJ_T0038780.1 MGP_C3HHeJ_G0020953.1 mouse_genomes_project 14 41103412 41107766 - Wdhd1 protein_coding retained_intron MGP_C3HHeJ_T0038018.1 MGP_C3HHeJ_G0020733.1 mouse_genomes_project 14 4717560 4736145 + MGP_C3HHeJ_P0038018 3830406C13Rik protein_coding protein_coding MGP_C3HHeJ_T0038019.1 MGP_C3HHeJ_G0020733.1 mouse_genomes_project 14 4717600 4736149 + MGP_C3HHeJ_P0038019 3830406C13Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0100219.1 MGP_C3HHeJ_G0038413.1 mouse_genomes_project 14 96326574 96326706 + Gm26367 snoRNA snoRNA MGP_C3HHeJ_T0038890.1 MGP_C3HHeJ_G0020994.1 mouse_genomes_project 14 44764233 44765178 + MGP_C3HHeJ_P0038890 protein_coding protein_coding MGP_C3HHeJ_T0003462.1 MGP_C3HHeJ_G0003149.1 mouse_genomes_project 14 19728092 19737751 - Arf4os antisense antisense MGP_C3HHeJ_T0038694.1 MGP_C3HHeJ_G0020925.1 mouse_genomes_project 14 31861441 33021240 - MGP_C3HHeJ_P0038694 Nrg3 protein_coding protein_coding MGP_C3HHeJ_T0038695.1 MGP_C3HHeJ_G0020925.1 mouse_genomes_project 14 31862966 33020977 - MGP_C3HHeJ_P0038695 Nrg3 protein_coding protein_coding MGP_C3HHeJ_T0038696.1 MGP_C3HHeJ_G0020925.1 mouse_genomes_project 14 31862982 33020979 - MGP_C3HHeJ_P0038696 Nrg3 protein_coding protein_coding MGP_C3HHeJ_T0038697.1 MGP_C3HHeJ_G0020925.1 mouse_genomes_project 14 32549997 33020818 - Nrg3 protein_coding retained_intron MGP_C3HHeJ_T0012855.1 MGP_C3HHeJ_G0010959.1 mouse_genomes_project 14 19454910 19455775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039399.1 MGP_C3HHeJ_G0021150.1 mouse_genomes_project 14 52116406 52136461 + MGP_C3HHeJ_P0039399 Il17d protein_coding protein_coding MGP_C3HHeJ_T0038101.1 MGP_C3HHeJ_G0020760.1 mouse_genomes_project 14 12620417 12681414 + MGP_C3HHeJ_P0038101 Nid2 protein_coding protein_coding MGP_C3HHeJ_T0017193.1 MGP_C3HHeJ_G0015040.1 mouse_genomes_project 14 73187318 73208169 + Gm19301 processed_transcript processed_transcript MGP_C3HHeJ_T0039476.1 MGP_C3HHeJ_G0021172.1 mouse_genomes_project 14 54938243 54977633 - MGP_C3HHeJ_P0039476 Nupl1 protein_coding protein_coding MGP_C3HHeJ_T0038351.1 MGP_C3HHeJ_G0020830.1 mouse_genomes_project 14 21654064 21657283 + Wnt5a protein_coding processed_transcript MGP_C3HHeJ_T0038352.1 MGP_C3HHeJ_G0020830.1 mouse_genomes_project 14 21654273 21670978 + MGP_C3HHeJ_P0038352 Wnt5a protein_coding protein_coding MGP_C3HHeJ_T0038353.1 MGP_C3HHeJ_G0020830.1 mouse_genomes_project 14 21658781 21660089 + Wnt5a protein_coding processed_transcript MGP_C3HHeJ_T0038354.1 MGP_C3HHeJ_G0020830.1 mouse_genomes_project 14 21659553 21671555 + Wnt5a protein_coding processed_transcript MGP_C3HHeJ_T0038355.1 MGP_C3HHeJ_G0020830.1 mouse_genomes_project 14 21659614 21660071 + Wnt5a protein_coding processed_transcript MGP_C3HHeJ_T0039123.1 MGP_C3HHeJ_G0021057.1 mouse_genomes_project 14 48992608 49002811 - MGP_C3HHeJ_P0039123 Ajuba protein_coding protein_coding MGP_C3HHeJ_T0009912.1 MGP_C3HHeJ_G0008045.1 mouse_genomes_project 14 59462558 59462643 + Mir124a-1 miRNA miRNA MGP_C3HHeJ_T0038639.1 MGP_C3HHeJ_G0020903.1 mouse_genomes_project 14 27563852 27571045 - MGP_C3HHeJ_P0038639 Gprin2 protein_coding protein_coding MGP_C3HHeJ_T0038047.1 MGP_C3HHeJ_G0020747.1 mouse_genomes_project 14 7427169 7639117 + MGP_C3HHeJ_P0038047 Nek10 protein_coding protein_coding MGP_C3HHeJ_T0038048.1 MGP_C3HHeJ_G0020747.1 mouse_genomes_project 14 7427219 7644076 + MGP_C3HHeJ_P0038048 Nek10 protein_coding protein_coding MGP_C3HHeJ_T0038049.1 MGP_C3HHeJ_G0020747.1 mouse_genomes_project 14 7427219 7644076 + MGP_C3HHeJ_P0038049 Nek10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038050.1 MGP_C3HHeJ_G0020747.1 mouse_genomes_project 14 7471307 7596289 + Nek10 protein_coding processed_transcript MGP_C3HHeJ_T0038051.1 MGP_C3HHeJ_G0020747.1 mouse_genomes_project 14 7475591 7598064 + Nek10 protein_coding retained_intron MGP_C3HHeJ_T0038052.1 MGP_C3HHeJ_G0020747.1 mouse_genomes_project 14 7555976 7644126 + MGP_C3HHeJ_P0038052 Nek10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039387.1 MGP_C3HHeJ_G0021144.1 mouse_genomes_project 14 51595024 51618011 - MGP_C3HHeJ_P0039387 Gja3 protein_coding protein_coding MGP_C3HHeJ_T0012852.1 MGP_C3HHeJ_G0010956.1 mouse_genomes_project 14 18993389 18994578 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039409.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52242978 52355624 - MGP_C3HHeJ_P0039409 Lats2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039412.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52293961 52355644 - MGP_C3HHeJ_P0039412 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039413.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52295397 52355642 - MGP_C3HHeJ_P0039413 Lats2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039414.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52299109 52355626 - MGP_C3HHeJ_P0039414 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039415.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52304349 52308111 - MGP_C3HHeJ_P0039415 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039416.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52312026 52369056 - MGP_C3HHeJ_P0039416 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039417.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52331214 52343817 - MGP_C3HHeJ_P0039417 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039418.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52331214 52343817 - MGP_C3HHeJ_P0039418 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039419.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52343696 52354175 - MGP_C3HHeJ_P0039419 Lats2 protein_coding protein_coding MGP_C3HHeJ_T0039420.1 MGP_C3HHeJ_G0021153.1 mouse_genomes_project 14 52343769 52356099 - Lats2 protein_coding processed_transcript MGP_C3HHeJ_T0040037.1 MGP_C3HHeJ_G0021381.1 mouse_genomes_project 14 102202995 102203400 - MGP_C3HHeJ_P0040037 Gm4775 protein_coding protein_coding MGP_C3HHeJ_T0012886.1 MGP_C3HHeJ_G0010990.1 mouse_genomes_project 14 54861186 54861534 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038561.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25446064 25466050 + MGP_C3HHeJ_P0038561 protein_coding protein_coding MGP_C3HHeJ_T0038562.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25446137 25462436 + MGP_C3HHeJ_P0038562 protein_coding protein_coding MGP_C3HHeJ_T0038563.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25446180 25462321 + MGP_C3HHeJ_P0038563 protein_coding protein_coding MGP_C3HHeJ_T0038564.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25451788 25466050 + MGP_C3HHeJ_P0038564 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038565.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25451990 25465442 + MGP_C3HHeJ_P0038565 protein_coding protein_coding MGP_C3HHeJ_T0038566.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25451991 25458890 + MGP_C3HHeJ_P0038566 protein_coding protein_coding MGP_C3HHeJ_T0038567.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25451991 25458594 + MGP_C3HHeJ_P0038567 protein_coding protein_coding MGP_C3HHeJ_T0038568.1 MGP_C3HHeJ_G0020874.1 mouse_genomes_project 14 25452319 25458817 + MGP_C3HHeJ_P0038568 protein_coding protein_coding MGP_C3HHeJ_T0039713.1 MGP_C3HHeJ_G0021268.1 mouse_genomes_project 14 64649459 64669767 - MGP_C3HHeJ_P0039713 Rhobtb2 protein_coding protein_coding MGP_C3HHeJ_T0038846.1 MGP_C3HHeJ_G0020965.1 mouse_genomes_project 14 43121881 43144303 + MGP_C3HHeJ_P0038846 Naa30 protein_coding protein_coding MGP_C3HHeJ_T0038847.1 MGP_C3HHeJ_G0020965.1 mouse_genomes_project 14 43121900 43140960 + MGP_C3HHeJ_P0038847 Naa30 protein_coding protein_coding MGP_C3HHeJ_T0038848.1 MGP_C3HHeJ_G0020965.1 mouse_genomes_project 14 43127177 43142645 + Naa30 protein_coding retained_intron MGP_C3HHeJ_T0038849.1 MGP_C3HHeJ_G0020965.1 mouse_genomes_project 14 43127798 43141527 + Naa30 protein_coding retained_intron MGP_C3HHeJ_T0002487.1 MGP_C3HHeJ_G0002399.1 mouse_genomes_project 14 48589753 48589816 + MGP_C3HHeJ_P0002487 Traj39 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039232.1 MGP_C3HHeJ_G0021090.1 mouse_genomes_project 14 50018991 50028615 + MGP_C3HHeJ_P0039232 Pck2 protein_coding protein_coding MGP_C3HHeJ_T0039859.1 MGP_C3HHeJ_G0021314.1 mouse_genomes_project 14 70683085 70707891 + MGP_C3HHeJ_P0039859 Erich6b protein_coding protein_coding MGP_C3HHeJ_T0038854.1 MGP_C3HHeJ_G0020967.1 mouse_genomes_project 14 43254995 43511392 - MGP_C3HHeJ_P0038854 Slc35f4 protein_coding protein_coding MGP_C3HHeJ_T0038855.1 MGP_C3HHeJ_G0020967.1 mouse_genomes_project 14 43254995 43511371 - MGP_C3HHeJ_P0038855 Slc35f4 protein_coding protein_coding MGP_C3HHeJ_T0038856.1 MGP_C3HHeJ_G0020967.1 mouse_genomes_project 14 43260885 43274838 - Slc35f4 protein_coding processed_transcript MGP_C3HHeJ_T0038857.1 MGP_C3HHeJ_G0020967.1 mouse_genomes_project 14 43272718 43511552 - MGP_C3HHeJ_P0038857 Slc35f4 protein_coding protein_coding MGP_C3HHeJ_T0038858.1 MGP_C3HHeJ_G0020967.1 mouse_genomes_project 14 43277683 43511359 - Slc35f4 protein_coding retained_intron MGP_C3HHeJ_T0002500.1 MGP_C3HHeJ_G0002412.1 mouse_genomes_project 14 48604716 48604773 + MGP_C3HHeJ_P0002500 Traj25 TR_J_gene TR_J_gene MGP_C3HHeJ_T0006624.1 MGP_C3HHeJ_G0005469.1 mouse_genomes_project 14 56380509 56381922 - Gm27010 lincRNA lincRNA MGP_C3HHeJ_T0101750.1 MGP_C3HHeJ_G0039715.1 mouse_genomes_project 14 121535966 121536251 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0002564.1 MGP_C3HHeJ_G0002468.1 mouse_genomes_project 14 46984957 46985549 + MGP_C3HHeJ_P0002564 Trav7d-3 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039675.1 MGP_C3HHeJ_G0021249.1 mouse_genomes_project 14 62803390 62992461 - MGP_C3HHeJ_P0039675 Dock5 protein_coding protein_coding MGP_C3HHeJ_T0012851.1 MGP_C3HHeJ_G0010955.1 mouse_genomes_project 14 18850680 18850927 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011282.1 MGP_C3HHeJ_G0009415.1 mouse_genomes_project 14 56405029 56405166 + Gm27972 misc_RNA misc_RNA MGP_C3HHeJ_T0040098.1 MGP_C3HHeJ_G0021410.1 mouse_genomes_project 14 118792273 118805136 - MGP_C3HHeJ_P0040098 Gpr183 protein_coding protein_coding MGP_C3HHeJ_T0012879.1 MGP_C3HHeJ_G0010983.1 mouse_genomes_project 14 48737390 48738074 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038169.1 MGP_C3HHeJ_G0020787.1 mouse_genomes_project 14 13984519 14385970 + MGP_C3HHeJ_P0038169 Adk protein_coding protein_coding MGP_C3HHeJ_T0038170.1 MGP_C3HHeJ_G0020787.1 mouse_genomes_project 14 14008190 14385975 + MGP_C3HHeJ_P0038170 Adk protein_coding unknown_likely_coding MGP_C3HHeJ_T0038630.1 MGP_C3HHeJ_G0020895.1 mouse_genomes_project 14 27285608 27292669 + MGP_C3HHeJ_P0038630 Gdf2 protein_coding protein_coding MGP_C3HHeJ_T0039080.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48665564 48681682 + MGP_C3HHeJ_P0039080 Abhd4 protein_coding protein_coding MGP_C3HHeJ_T0039081.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48670645 48681776 + MGP_C3HHeJ_P0039081 Abhd4 protein_coding protein_coding MGP_C3HHeJ_T0039082.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48670660 48674548 + Abhd4 protein_coding retained_intron MGP_C3HHeJ_T0039083.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48670666 48674707 + MGP_C3HHeJ_P0039083 Abhd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039084.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48670694 48674710 + MGP_C3HHeJ_P0039084 Abhd4 protein_coding protein_coding MGP_C3HHeJ_T0039085.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48674362 48683019 + MGP_C3HHeJ_P0039085 Abhd4 protein_coding protein_coding MGP_C3HHeJ_T0039086.1 MGP_C3HHeJ_G0021047.1 mouse_genomes_project 14 48674667 48680461 + MGP_C3HHeJ_P0039086 Abhd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100207.1 MGP_C3HHeJ_G0038401.1 mouse_genomes_project 14 73740535 73740657 + Gm26251 snoRNA snoRNA MGP_C3HHeJ_T0039503.1 MGP_C3HHeJ_G0021182.1 mouse_genomes_project 14 56086122 56108607 - MGP_C3HHeJ_P0039503 Ebpl protein_coding protein_coding MGP_C3HHeJ_T0100198.1 MGP_C3HHeJ_G0038392.1 mouse_genomes_project 14 57438332 57438464 - Gm23816 snoRNA snoRNA MGP_C3HHeJ_T0003514.1 MGP_C3HHeJ_G0003190.1 mouse_genomes_project 14 118716333 118717884 - 1810041H14Rik antisense antisense MGP_C3HHeJ_T0003515.1 MGP_C3HHeJ_G0003190.1 mouse_genomes_project 14 118716419 118718118 - 1810041H14Rik antisense antisense MGP_C3HHeJ_T0003516.1 MGP_C3HHeJ_G0003190.1 mouse_genomes_project 14 118716467 118719023 - 1810041H14Rik antisense antisense MGP_C3HHeJ_T0039900.1 MGP_C3HHeJ_G0021331.1 mouse_genomes_project 14 73399867 73431384 - MGP_C3HHeJ_P0039900 Tnfsf11 protein_coding protein_coding MGP_C3HHeJ_T0100214.1 MGP_C3HHeJ_G0038408.1 mouse_genomes_project 14 90628150 90628276 + Gm24680 snoRNA snoRNA MGP_C3HHeJ_T0039091.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48774785 48814977 - MGP_C3HHeJ_P0039091 Slc7a7 protein_coding protein_coding MGP_C3HHeJ_T0039092.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48774787 48823181 - MGP_C3HHeJ_P0039092 Slc7a7 protein_coding protein_coding MGP_C3HHeJ_T0039093.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48774788 48815883 - MGP_C3HHeJ_P0039093 Slc7a7 protein_coding protein_coding MGP_C3HHeJ_T0039094.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48778816 48789220 - Slc7a7 protein_coding processed_transcript MGP_C3HHeJ_T0039095.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48779265 48802901 - Slc7a7 protein_coding processed_transcript MGP_C3HHeJ_T0039096.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48784050 48816267 - MGP_C3HHeJ_P0039096 Slc7a7 protein_coding protein_coding MGP_C3HHeJ_T0039097.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48814335 48817833 - MGP_C3HHeJ_P0039097 Slc7a7 protein_coding protein_coding MGP_C3HHeJ_T0039098.1 MGP_C3HHeJ_G0021050.1 mouse_genomes_project 14 48814472 48823262 - MGP_C3HHeJ_P0039098 Slc7a7 protein_coding protein_coding MGP_C3HHeJ_T0000892.1 MGP_C3HHeJ_G0000832.1 mouse_genomes_project 14 64474523 64476791 - TEC TEC MGP_C3HHeJ_T0039456.1 MGP_C3HHeJ_G0021165.1 mouse_genomes_project 14 54062902 54082123 - MGP_C3HHeJ_P0039456 Phf11c protein_coding protein_coding MGP_C3HHeJ_T0009896.1 MGP_C3HHeJ_G0008029.1 mouse_genomes_project 14 38687912 38687981 - Mir327 miRNA miRNA MGP_C3HHeJ_T0039684.1 MGP_C3HHeJ_G0021255.1 mouse_genomes_project 14 64105612 64117776 + MGP_C3HHeJ_P0039684 Stc1 protein_coding protein_coding MGP_C3HHeJ_T0012907.1 MGP_C3HHeJ_G0011011.1 mouse_genomes_project 14 104908019 104908469 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040103.1 MGP_C3HHeJ_G0021413.1 mouse_genomes_project 14 119035522 119275555 + MGP_C3HHeJ_P0040103 Clybl protein_coding protein_coding MGP_C3HHeJ_T0009889.1 MGP_C3HHeJ_G0008022.1 mouse_genomes_project 14 18566500 18566585 + Mir3075 miRNA miRNA MGP_C3HHeJ_T0038468.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24415474 24451908 - MGP_C3HHeJ_P0038468 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038469.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24415474 24436601 - MGP_C3HHeJ_P0038469 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038470.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24415802 24432278 - MGP_C3HHeJ_P0038470 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038471.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24415910 24418827 - MGP_C3HHeJ_P0038471 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038472.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24416558 24418273 - MGP_C3HHeJ_P0038472 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038473.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24418971 24421133 - MGP_C3HHeJ_P0038473 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038474.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24421440 24448461 - MGP_C3HHeJ_P0038474 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038475.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24421750 24426541 - MGP_C3HHeJ_P0038475 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038476.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24421936 24430393 - MGP_C3HHeJ_P0038476 Nisch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038477.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24422045 24437690 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0038478.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24422243 24430713 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0038479.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24425920 24427900 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0038480.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24428383 24451933 - MGP_C3HHeJ_P0038480 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038481.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24428583 24430020 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0038482.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24430081 24436568 - MGP_C3HHeJ_P0038482 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038483.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24430760 24451771 - MGP_C3HHeJ_P0038483 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038484.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24430796 24451771 - MGP_C3HHeJ_P0038484 Nisch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038485.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24431434 24432523 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0038486.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24432183 24448382 - MGP_C3HHeJ_P0038486 Nisch protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038487.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24433410 24436160 - Nisch protein_coding retained_intron MGP_C3HHeJ_T0038488.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24446014 24451771 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0038489.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24446936 24451772 - MGP_C3HHeJ_P0038489 Nisch protein_coding protein_coding MGP_C3HHeJ_T0038490.1 MGP_C3HHeJ_G0020856.1 mouse_genomes_project 14 24448376 24464012 - Nisch protein_coding processed_transcript MGP_C3HHeJ_T0017197.1 MGP_C3HHeJ_G0015042.1 mouse_genomes_project 14 101185367 101190654 - Gm17066 processed_transcript processed_transcript MGP_C3HHeJ_T0017198.1 MGP_C3HHeJ_G0015042.1 mouse_genomes_project 14 101185386 101190439 - Gm17066 processed_transcript processed_transcript MGP_C3HHeJ_T0009910.1 MGP_C3HHeJ_G0008043.1 mouse_genomes_project 14 57674432 57674542 + Mir6541 miRNA miRNA MGP_C3HHeJ_T0101739.1 MGP_C3HHeJ_G0039704.1 mouse_genomes_project 14 45185635 45186068 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101741.1 MGP_C3HHeJ_G0039706.1 mouse_genomes_project 14 45261733 45262189 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039042.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46548858 46559244 - MGP_C3HHeJ_P0039042 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039043.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549031 46559289 - MGP_C3HHeJ_P0039043 Mettl3 protein_coding protein_coding MGP_C3HHeJ_T0039044.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549039 46554527 - MGP_C3HHeJ_P0039044 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039045.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549047 46550852 - Mettl3 protein_coding retained_intron MGP_C3HHeJ_T0039046.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549047 46550934 - MGP_C3HHeJ_P0039046 Mettl3 protein_coding protein_coding MGP_C3HHeJ_T0039047.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549047 46550935 - MGP_C3HHeJ_P0039047 Mettl3 protein_coding protein_coding MGP_C3HHeJ_T0039048.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549693 46559285 - MGP_C3HHeJ_P0039048 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039049.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46549893 46550945 - Mettl3 protein_coding retained_intron MGP_C3HHeJ_T0039050.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46550843 46552640 - Mettl3 protein_coding retained_intron MGP_C3HHeJ_T0039051.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46551173 46553955 - Mettl3 protein_coding retained_intron MGP_C3HHeJ_T0039052.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46551388 46559247 - MGP_C3HHeJ_P0039052 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039053.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46551653 46559148 - MGP_C3HHeJ_P0039053 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039054.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46552208 46559148 - MGP_C3HHeJ_P0039054 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039055.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46552218 46559268 - MGP_C3HHeJ_P0039055 Mettl3 protein_coding protein_coding MGP_C3HHeJ_T0039056.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46554534 46559260 - MGP_C3HHeJ_P0039056 Mettl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039057.1 MGP_C3HHeJ_G0021037.1 mouse_genomes_project 14 46557781 46559285 - Mettl3 protein_coding retained_intron MGP_C3HHeJ_T0002653.1 MGP_C3HHeJ_G0002535.1 mouse_genomes_project 14 46857904 46858403 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0012846.1 MGP_C3HHeJ_G0010950.1 mouse_genomes_project 14 11544600 11545771 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098958.1 MGP_C3HHeJ_G0037152.1 mouse_genomes_project 14 101355662 101355770 - Gm24207 snRNA snRNA MGP_C3HHeJ_T0038734.1 MGP_C3HHeJ_G0020941.1 mouse_genomes_project 14 39108149 39131033 + MGP_C3HHeJ_P0038734 protein_coding protein_coding MGP_C3HHeJ_T0012913.1 MGP_C3HHeJ_G0011017.1 mouse_genomes_project 14 120885019 120885560 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100173.1 MGP_C3HHeJ_G0038367.1 mouse_genomes_project 14 2832512 2832712 + Gm22053 snoRNA snoRNA MGP_C3HHeJ_T0038618.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26710555 26781137 - MGP_C3HHeJ_P0038618 Mapk8 protein_coding protein_coding MGP_C3HHeJ_T0038619.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26713706 26781124 - MGP_C3HHeJ_P0038619 Mapk8 protein_coding protein_coding MGP_C3HHeJ_T0038620.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26714762 26781121 - MGP_C3HHeJ_P0038620 Mapk8 protein_coding protein_coding MGP_C3HHeJ_T0038621.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26714827 26744540 - MGP_C3HHeJ_P0038621 Mapk8 protein_coding protein_coding MGP_C3HHeJ_T0038622.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26714962 26723057 - Mapk8 protein_coding processed_transcript MGP_C3HHeJ_T0038623.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26714965 26744523 - MGP_C3HHeJ_P0038623 Mapk8 protein_coding protein_coding MGP_C3HHeJ_T0038624.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26716671 26721977 - Mapk8 protein_coding retained_intron MGP_C3HHeJ_T0038625.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26723686 26781137 - Mapk8 protein_coding retained_intron MGP_C3HHeJ_T0038626.1 MGP_C3HHeJ_G0020891.1 mouse_genomes_project 14 26739913 26781136 - Mapk8 protein_coding retained_intron MGP_C3HHeJ_T0039999.1 MGP_C3HHeJ_G0021369.1 mouse_genomes_project 14 99026984 99036368 + MGP_C3HHeJ_P0039999 Acod1 protein_coding protein_coding MGP_C3HHeJ_T0038346.1 MGP_C3HHeJ_G0020827.1 mouse_genomes_project 14 20565688 20619068 + MGP_C3HHeJ_P0038346 Fam208a protein_coding protein_coding MGP_C3HHeJ_T0039679.1 MGP_C3HHeJ_G0021252.1 mouse_genomes_project 14 63581496 63619425 - MGP_C3HHeJ_P0039679 Adam7 protein_coding protein_coding MGP_C3HHeJ_T0039680.1 MGP_C3HHeJ_G0021252.1 mouse_genomes_project 14 63582006 63595540 - Adam7 protein_coding retained_intron MGP_C3HHeJ_T0003489.1 MGP_C3HHeJ_G0003172.1 mouse_genomes_project 14 52097427 52101519 - Ift88os antisense antisense MGP_C3HHeJ_T0002539.1 MGP_C3HHeJ_G0002449.1 mouse_genomes_project 14 48570784 48570838 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0039569.1 MGP_C3HHeJ_G0021213.1 mouse_genomes_project 14 58976479 58985945 + MGP_C3HHeJ_P0039569 Prss52 protein_coding protein_coding MGP_C3HHeJ_T0038640.1 MGP_C3HHeJ_G0020904.1 mouse_genomes_project 14 27589758 27592535 + Syt15 protein_coding retained_intron MGP_C3HHeJ_T0038641.1 MGP_C3HHeJ_G0020904.1 mouse_genomes_project 14 27590209 27597950 + MGP_C3HHeJ_P0038641 Syt15 protein_coding protein_coding MGP_C3HHeJ_T0038642.1 MGP_C3HHeJ_G0020904.1 mouse_genomes_project 14 27590210 27600631 + MGP_C3HHeJ_P0038642 Syt15 protein_coding protein_coding MGP_C3HHeJ_T0002510.1 MGP_C3HHeJ_G0002422.1 mouse_genomes_project 14 48614460 48614520 + MGP_C3HHeJ_P0002510 Traj15 TR_J_gene TR_J_gene MGP_C3HHeJ_T0009934.1 MGP_C3HHeJ_G0008067.1 mouse_genomes_project 14 111608184 111608266 + Mir19a miRNA miRNA MGP_C3HHeJ_T0012866.1 MGP_C3HHeJ_G0010970.1 mouse_genomes_project 14 39491268 39491461 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002579.1 MGP_C3HHeJ_G0002480.1 mouse_genomes_project 14 47605552 47606060 + MGP_C3HHeJ_P0002579 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039677.1 MGP_C3HHeJ_G0021251.1 mouse_genomes_project 14 63147720 63154120 + MGP_C3HHeJ_P0039677 Nefl protein_coding protein_coding MGP_C3HHeJ_T0039219.1 MGP_C3HHeJ_G0021086.1 mouse_genomes_project 14 49954407 49966931 + MGP_C3HHeJ_P0039219 Dhrs4 protein_coding protein_coding MGP_C3HHeJ_T0012878.1 MGP_C3HHeJ_G0010982.1 mouse_genomes_project 14 48727130 48727456 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039957.1 MGP_C3HHeJ_G0021357.1 mouse_genomes_project 14 94880216 94910900 + MGP_C3HHeJ_P0039957 Bora protein_coding protein_coding MGP_C3HHeJ_T0009930.1 MGP_C3HHeJ_G0008063.1 mouse_genomes_project 14 104580446 104580607 + Gm24818 miRNA miRNA MGP_C3HHeJ_T0039351.1 MGP_C3HHeJ_G0021118.1 mouse_genomes_project 14 50378193 50383530 - MGP_C3HHeJ_P0039351 Cbln3 protein_coding protein_coding MGP_C3HHeJ_T0039352.1 MGP_C3HHeJ_G0021118.1 mouse_genomes_project 14 50381334 50383506 - MGP_C3HHeJ_P0039352 Cbln3 protein_coding protein_coding MGP_C3HHeJ_T0098944.1 MGP_C3HHeJ_G0037138.1 mouse_genomes_project 14 77618838 77619002 - Gm22891 snRNA snRNA MGP_C3HHeJ_T0039553.1 MGP_C3HHeJ_G0021205.1 mouse_genomes_project 14 58364827 58387157 - MGP_C3HHeJ_P0039553 Mtmr9 protein_coding protein_coding MGP_C3HHeJ_T0039554.1 MGP_C3HHeJ_G0021206.1 mouse_genomes_project 14 58460695 58676526 + MGP_C3HHeJ_P0039554 Xkr6 protein_coding protein_coding MGP_C3HHeJ_T0039555.1 MGP_C3HHeJ_G0021206.1 mouse_genomes_project 14 58460867 58520206 + MGP_C3HHeJ_P0039555 Xkr6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039556.1 MGP_C3HHeJ_G0021206.1 mouse_genomes_project 14 58461218 58516833 + MGP_C3HHeJ_P0039556 Xkr6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039557.1 MGP_C3HHeJ_G0021206.1 mouse_genomes_project 14 58513180 58517121 + Xkr6 protein_coding processed_transcript MGP_C3HHeJ_T0039558.1 MGP_C3HHeJ_G0021206.1 mouse_genomes_project 14 58650457 58675736 + MGP_C3HHeJ_P0039558 Xkr6 protein_coding protein_coding MGP_C3HHeJ_T0012857.1 MGP_C3HHeJ_G0010961.1 mouse_genomes_project 14 19661136 19661759 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100199.1 MGP_C3HHeJ_G0038393.1 mouse_genomes_project 14 57468558 57468717 + Gm25162 snoRNA snoRNA MGP_C3HHeJ_T0038867.1 MGP_C3HHeJ_G0020974.1 mouse_genomes_project 14 44149746 44150682 - MGP_C3HHeJ_P0038867 Olfr728 protein_coding protein_coding MGP_C3HHeJ_T0037974.1 MGP_C3HHeJ_G0020718.1 mouse_genomes_project 14 95734 96205 + MGP_C3HHeJ_P0037974 Gm26661 protein_coding protein_coding MGP_C3HHeJ_T0000877.1 MGP_C3HHeJ_G0000817.1 mouse_genomes_project 14 41621477 41624037 + TEC TEC MGP_C3HHeJ_T0038512.1 MGP_C3HHeJ_G0020864.1 mouse_genomes_project 14 24729435 24746070 - MGP_C3HHeJ_P0038512 Mettl6 protein_coding protein_coding MGP_C3HHeJ_T0038043.1 MGP_C3HHeJ_G0020744.1 mouse_genomes_project 14 6906338 6915361 + MGP_C3HHeJ_P0038043 Il3ra protein_coding protein_coding MGP_C3HHeJ_T0009906.1 MGP_C3HHeJ_G0008039.1 mouse_genomes_project 14 54947845 54947955 - Mir719 miRNA miRNA MGP_C3HHeJ_T0039628.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324025 61336499 + MGP_C3HHeJ_P0039628 Stmn4 protein_coding protein_coding MGP_C3HHeJ_T0039629.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324033 61341471 + MGP_C3HHeJ_P0039629 Stmn4 protein_coding protein_coding MGP_C3HHeJ_T0039630.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324096 61335596 + Stmn4 protein_coding retained_intron MGP_C3HHeJ_T0039631.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324096 61335385 + Stmn4 protein_coding processed_transcript MGP_C3HHeJ_T0039632.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324102 61341465 + MGP_C3HHeJ_P0039632 Stmn4 protein_coding protein_coding MGP_C3HHeJ_T0039633.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324103 61341465 + MGP_C3HHeJ_P0039633 Stmn4 protein_coding protein_coding MGP_C3HHeJ_T0039634.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324104 61341439 + MGP_C3HHeJ_P0039634 Stmn4 protein_coding protein_coding MGP_C3HHeJ_T0039635.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324107 61336504 + MGP_C3HHeJ_P0039635 Stmn4 protein_coding protein_coding MGP_C3HHeJ_T0039636.1 MGP_C3HHeJ_G0021237.1 mouse_genomes_project 14 61324110 61337844 + Stmn4 protein_coding retained_intron MGP_C3HHeJ_T0002452.1 MGP_C3HHeJ_G0002370.1 mouse_genomes_project 14 48630907 48634692 + MGP_C3HHeJ_P0002452 Trac TR_C_gene TR_C_gene MGP_C3HHeJ_T0002453.1 MGP_C3HHeJ_G0002370.1 mouse_genomes_project 14 48630907 48633607 + MGP_C3HHeJ_P0002453 Trac TR_C_gene TR_C_gene MGP_C3HHeJ_T0009902.1 MGP_C3HHeJ_G0008035.1 mouse_genomes_project 14 49406891 49406974 - Mir208a miRNA miRNA MGP_C3HHeJ_T0002489.1 MGP_C3HHeJ_G0002401.1 mouse_genomes_project 14 48591308 48591368 + MGP_C3HHeJ_P0002489 Traj37 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039156.1 MGP_C3HHeJ_G0021065.1 mouse_genomes_project 14 49121783 49126355 + MGP_C3HHeJ_P0039156 1700123O20Rik protein_coding protein_coding MGP_C3HHeJ_T0000887.1 MGP_C3HHeJ_G0000827.1 mouse_genomes_project 14 59726814 59730219 - TEC TEC MGP_C3HHeJ_T0006610.1 MGP_C3HHeJ_G0005458.1 mouse_genomes_project 14 44129902 44131714 + Gm45057 lincRNA lincRNA MGP_C3HHeJ_T0006639.1 MGP_C3HHeJ_G0005479.1 mouse_genomes_project 14 65759177 65780222 + 2410012E07Rik lincRNA lincRNA MGP_C3HHeJ_T0002658.1 MGP_C3HHeJ_G0002540.1 mouse_genomes_project 14 47696236 47696404 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0039157.1 MGP_C3HHeJ_G0021066.1 mouse_genomes_project 14 49145750 49147559 - MGP_C3HHeJ_P0039157 Cebpe protein_coding protein_coding MGP_C3HHeJ_T0038880.1 MGP_C3HHeJ_G0020984.1 mouse_genomes_project 14 44447939 44448875 + MGP_C3HHeJ_P0038880 Olfr738 protein_coding protein_coding MGP_C3HHeJ_T0038735.1 MGP_C3HHeJ_G0020942.1 mouse_genomes_project 14 39135606 39147226 - MGP_C3HHeJ_P0038735 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0002567.1 MGP_C3HHeJ_G0002470.1 mouse_genomes_project 14 47010119 47010668 + MGP_C3HHeJ_P0002567 TR_V_gene TR_V_gene MGP_C3HHeJ_T0003498.1 MGP_C3HHeJ_G0003179.1 mouse_genomes_project 14 62337060 62346868 - Gm6878 antisense antisense MGP_C3HHeJ_T0039363.1 MGP_C3HHeJ_G0021129.1 mouse_genomes_project 14 50648268 50653094 - MGP_C3HHeJ_P0039363 Gzmd protein_coding protein_coding MGP_C3HHeJ_T0039127.1 MGP_C3HHeJ_G0021061.1 mouse_genomes_project 14 49060734 49070819 - MGP_C3HHeJ_P0039127 Cdh24 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039421.1 MGP_C3HHeJ_G0021154.1 mouse_genomes_project 14 52415815 52422799 + MGP_C3HHeJ_P0039421 Sap18 protein_coding protein_coding MGP_C3HHeJ_T0039422.1 MGP_C3HHeJ_G0021154.1 mouse_genomes_project 14 52415853 52422788 + MGP_C3HHeJ_P0039422 Sap18 protein_coding protein_coding MGP_C3HHeJ_T0039423.1 MGP_C3HHeJ_G0021154.1 mouse_genomes_project 14 52415899 52416485 + Sap18 protein_coding retained_intron MGP_C3HHeJ_T0039424.1 MGP_C3HHeJ_G0021154.1 mouse_genomes_project 14 52416061 52419955 + MGP_C3HHeJ_P0039424 Sap18 protein_coding protein_coding MGP_C3HHeJ_T0039425.1 MGP_C3HHeJ_G0021154.1 mouse_genomes_project 14 52416267 52420135 + MGP_C3HHeJ_P0039425 Sap18 protein_coding protein_coding MGP_C3HHeJ_T0039426.1 MGP_C3HHeJ_G0021154.1 mouse_genomes_project 14 52416273 52420143 + MGP_C3HHeJ_P0039426 Sap18 protein_coding protein_coding MGP_C3HHeJ_T0039592.1 MGP_C3HHeJ_G0021224.1 mouse_genomes_project 14 60497881 60551266 + MGP_C3HHeJ_P0039592 Nuggc protein_coding protein_coding MGP_C3HHeJ_T0039593.1 MGP_C3HHeJ_G0021224.1 mouse_genomes_project 14 60504563 60551179 + MGP_C3HHeJ_P0039593 Nuggc protein_coding protein_coding MGP_C3HHeJ_T0038504.1 MGP_C3HHeJ_G0020861.1 mouse_genomes_project 14 24509197 24572478 - MGP_C3HHeJ_P0038504 Dnah1 protein_coding protein_coding MGP_C3HHeJ_T0098940.1 MGP_C3HHeJ_G0037134.1 mouse_genomes_project 14 65323694 65323796 - Gm24890 snRNA snRNA MGP_C3HHeJ_T0003518.1 MGP_C3HHeJ_G0003192.1 mouse_genomes_project 14 119842878 119847105 + Gm15735 antisense antisense MGP_C3HHeJ_T0038657.1 MGP_C3HHeJ_G0020911.1 mouse_genomes_project 14 27908218 27919538 - MGP_C3HHeJ_P0038657 9230112D13Rik protein_coding protein_coding MGP_C3HHeJ_T0038719.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38876554 38969874 - MGP_C3HHeJ_P0038719 Txndc16 protein_coding protein_coding MGP_C3HHeJ_T0038720.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38877005 38969905 - MGP_C3HHeJ_P0038720 Txndc16 protein_coding protein_coding MGP_C3HHeJ_T0038721.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38877013 38970808 - MGP_C3HHeJ_P0038721 Txndc16 protein_coding protein_coding MGP_C3HHeJ_T0038722.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38907955 38912450 - Txndc16 protein_coding retained_intron MGP_C3HHeJ_T0038723.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38910479 38969870 - Txndc16 protein_coding retained_intron MGP_C3HHeJ_T0038724.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38911348 38969862 - Txndc16 protein_coding retained_intron MGP_C3HHeJ_T0038725.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38957309 38969877 - MGP_C3HHeJ_P0038725 Txndc16 protein_coding protein_coding MGP_C3HHeJ_T0038726.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38958588 38969882 - Txndc16 protein_coding retained_intron MGP_C3HHeJ_T0038727.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38963773 38969844 - Txndc16 protein_coding processed_transcript MGP_C3HHeJ_T0038728.1 MGP_C3HHeJ_G0020937.1 mouse_genomes_project 14 38968367 38969870 - Txndc16 protein_coding processed_transcript MGP_C3HHeJ_T0101748.1 MGP_C3HHeJ_G0039713.1 mouse_genomes_project 14 46092815 46093277 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039394.1 MGP_C3HHeJ_G0021149.1 mouse_genomes_project 14 52010188 52108620 + MGP_C3HHeJ_P0039394 Ift88 protein_coding protein_coding MGP_C3HHeJ_T0039395.1 MGP_C3HHeJ_G0021149.1 mouse_genomes_project 14 52010206 52025771 + MGP_C3HHeJ_P0039395 Ift88 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039396.1 MGP_C3HHeJ_G0021149.1 mouse_genomes_project 14 52010232 52108620 + Ift88 protein_coding retained_intron MGP_C3HHeJ_T0039397.1 MGP_C3HHeJ_G0021149.1 mouse_genomes_project 14 52030438 52067144 + MGP_C3HHeJ_P0039397 Ift88 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039398.1 MGP_C3HHeJ_G0021149.1 mouse_genomes_project 14 52068820 52076791 + Ift88 protein_coding retained_intron MGP_C3HHeJ_T0098930.1 MGP_C3HHeJ_G0037124.1 mouse_genomes_project 14 44783040 44783147 + Gm24316 snRNA snRNA MGP_C3HHeJ_T0038343.1 MGP_C3HHeJ_G0020825.1 mouse_genomes_project 14 20145988 20223746 + MGP_C3HHeJ_P0038343 Il17rd protein_coding protein_coding MGP_C3HHeJ_T0039960.1 MGP_C3HHeJ_G0021359.1 mouse_genomes_project 14 94935801 95099047 + MGP_C3HHeJ_P0039960 protein_coding protein_coding MGP_C3HHeJ_T0038073.1 MGP_C3HHeJ_G0020755.1 mouse_genomes_project 14 10961139 10964255 - MGP_C3HHeJ_P0038073 Rpl15 protein_coding protein_coding MGP_C3HHeJ_T0038074.1 MGP_C3HHeJ_G0020755.1 mouse_genomes_project 14 10962449 10964579 - MGP_C3HHeJ_P0038074 Rpl15 protein_coding protein_coding MGP_C3HHeJ_T0100182.1 MGP_C3HHeJ_G0038376.1 mouse_genomes_project 14 24252022 24252098 - Snord19 snoRNA snoRNA MGP_C3HHeJ_T0011274.1 MGP_C3HHeJ_G0009407.1 mouse_genomes_project 14 25301814 25301911 + Gm26045 misc_RNA misc_RNA MGP_C3HHeJ_T0006599.1 MGP_C3HHeJ_G0005450.1 mouse_genomes_project 14 33207750 33236930 + 1700109I08Rik lincRNA lincRNA MGP_C3HHeJ_T0038690.1 MGP_C3HHeJ_G0020922.1 mouse_genomes_project 14 30533625 30554063 - MGP_C3HHeJ_P0038690 Cdhr1 protein_coding protein_coding MGP_C3HHeJ_T0038505.1 MGP_C3HHeJ_G0020862.1 mouse_genomes_project 14 24585048 24621402 + MGP_C3HHeJ_P0038505 Capn7 protein_coding protein_coding MGP_C3HHeJ_T0038506.1 MGP_C3HHeJ_G0020862.1 mouse_genomes_project 14 24585085 24621404 + MGP_C3HHeJ_P0038506 Capn7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038507.1 MGP_C3HHeJ_G0020862.1 mouse_genomes_project 14 24585117 24621402 + MGP_C3HHeJ_P0038507 Capn7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100228.1 MGP_C3HHeJ_G0038422.1 mouse_genomes_project 14 106210062 106210192 - Gm25901 snoRNA snoRNA MGP_C3HHeJ_T0011271.1 MGP_C3HHeJ_G0009404.1 mouse_genomes_project 14 14197246 14197482 + Gm26372 misc_RNA misc_RNA MGP_C3HHeJ_T0098243.1 MGP_C3HHeJ_G0036455.1 mouse_genomes_project 14 44875879 44876177 - Rpph1 ribozyme ribozyme MGP_C3HHeJ_T0100216.1 MGP_C3HHeJ_G0038410.1 mouse_genomes_project 14 92747167 92747259 + Gm24770 snoRNA snoRNA MGP_C3HHeJ_T0039956.1 MGP_C3HHeJ_G0021356.1 mouse_genomes_project 14 94864470 94879926 - MGP_C3HHeJ_P0039956 Mzt1 protein_coding protein_coding MGP_C3HHeJ_T0003490.1 MGP_C3HHeJ_G0003173.1 mouse_genomes_project 14 55511638 55519746 - Mipepos antisense antisense MGP_C3HHeJ_T0000894.1 MGP_C3HHeJ_G0000834.1 mouse_genomes_project 14 82625338 82625715 - TEC TEC MGP_C3HHeJ_T0039779.1 MGP_C3HHeJ_G0021293.1 mouse_genomes_project 14 65796384 65887355 + MGP_C3HHeJ_P0039779 Gfra2 protein_coding protein_coding MGP_C3HHeJ_T0038754.1 MGP_C3HHeJ_G0020946.1 mouse_genomes_project 14 40160733 40169701 - MGP_C3HHeJ_P0038754 Bmp4 protein_coding protein_coding MGP_C3HHeJ_T0038755.1 MGP_C3HHeJ_G0020946.1 mouse_genomes_project 14 40160919 40169582 - MGP_C3HHeJ_P0038755 Bmp4 protein_coding protein_coding MGP_C3HHeJ_T0038756.1 MGP_C3HHeJ_G0020946.1 mouse_genomes_project 14 40164845 40169567 - Bmp4 protein_coding retained_intron MGP_C3HHeJ_T0012903.1 MGP_C3HHeJ_G0011007.1 mouse_genomes_project 14 95250595 95250936 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038131.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13415385 13462936 - MGP_C3HHeJ_P0038131 Ppp3cb protein_coding protein_coding MGP_C3HHeJ_T0038132.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13415889 13462910 - MGP_C3HHeJ_P0038132 Ppp3cb protein_coding protein_coding MGP_C3HHeJ_T0038133.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13416051 13462875 - MGP_C3HHeJ_P0038133 Ppp3cb protein_coding protein_coding MGP_C3HHeJ_T0038134.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13417573 13419792 - Ppp3cb protein_coding retained_intron MGP_C3HHeJ_T0038135.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13423692 13462803 - MGP_C3HHeJ_P0038135 Ppp3cb protein_coding protein_coding MGP_C3HHeJ_T0038136.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13425470 13432038 - Ppp3cb protein_coding retained_intron MGP_C3HHeJ_T0038137.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13431469 13436743 - Ppp3cb protein_coding retained_intron MGP_C3HHeJ_T0038138.1 MGP_C3HHeJ_G0020774.1 mouse_genomes_project 14 13436629 13440078 - Ppp3cb protein_coding retained_intron MGP_C3HHeJ_T0002516.1 MGP_C3HHeJ_G0002428.1 mouse_genomes_project 14 48622855 48622917 + MGP_C3HHeJ_P0002516 Traj6 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039560.1 MGP_C3HHeJ_G0021208.1 mouse_genomes_project 14 58799620 58806681 + MGP_C3HHeJ_P0039560 Sox7 protein_coding protein_coding MGP_C3HHeJ_T0002515.1 MGP_C3HHeJ_G0002427.1 mouse_genomes_project 14 48621642 48621701 + MGP_C3HHeJ_P0002515 Traj7 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039585.1 MGP_C3HHeJ_G0021219.1 mouse_genomes_project 14 60092121 60159732 - MGP_C3HHeJ_P0039585 Fzd3 protein_coding protein_coding MGP_C3HHeJ_T0039586.1 MGP_C3HHeJ_G0021219.1 mouse_genomes_project 14 60100814 60118707 - Fzd3 protein_coding processed_transcript MGP_C3HHeJ_T0039252.1 MGP_C3HHeJ_G0021093.1 mouse_genomes_project 14 50054717 50056053 + MGP_C3HHeJ_P0039252 Fitm1 protein_coding protein_coding MGP_C3HHeJ_T0039369.1 MGP_C3HHeJ_G0021135.1 mouse_genomes_project 14 50887652 50911122 + MGP_C3HHeJ_P0039369 Atp12a protein_coding protein_coding MGP_C3HHeJ_T0039375.1 MGP_C3HHeJ_G0021139.1 mouse_genomes_project 14 51197659 51226784 + MGP_C3HHeJ_P0039375 Mphosph8 protein_coding protein_coding MGP_C3HHeJ_T0039376.1 MGP_C3HHeJ_G0021139.1 mouse_genomes_project 14 51201585 51203331 + Mphosph8 protein_coding processed_transcript MGP_C3HHeJ_T0039377.1 MGP_C3HHeJ_G0021139.1 mouse_genomes_project 14 51217734 51220603 + Mphosph8 protein_coding processed_transcript MGP_C3HHeJ_T0039378.1 MGP_C3HHeJ_G0021139.1 mouse_genomes_project 14 51222491 51226781 + Mphosph8 protein_coding processed_transcript MGP_C3HHeJ_T0039379.1 MGP_C3HHeJ_G0021139.1 mouse_genomes_project 14 51222777 51226782 + Mphosph8 protein_coding processed_transcript MGP_C3HHeJ_T0039752.1 MGP_C3HHeJ_G0021281.1 mouse_genomes_project 14 65370040 65416192 - MGP_C3HHeJ_P0039752 Bmp1 protein_coding protein_coding MGP_C3HHeJ_T0039753.1 MGP_C3HHeJ_G0021281.1 mouse_genomes_project 14 65382188 65415997 - MGP_C3HHeJ_P0039753 Bmp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039539.1 MGP_C3HHeJ_G0021201.1 mouse_genomes_project 14 58020807 58069448 - MGP_C3HHeJ_P0039539 Gata4 protein_coding protein_coding MGP_C3HHeJ_T0039540.1 MGP_C3HHeJ_G0021201.1 mouse_genomes_project 14 58022260 58065326 - MGP_C3HHeJ_P0039540 Gata4 protein_coding protein_coding MGP_C3HHeJ_T0039541.1 MGP_C3HHeJ_G0021201.1 mouse_genomes_project 14 58065279 58097491 - MGP_C3HHeJ_P0039541 Gata4 protein_coding protein_coding MGP_C3HHeJ_T0039542.1 MGP_C3HHeJ_G0021201.1 mouse_genomes_project 14 58065292 58096911 - MGP_C3HHeJ_P0039542 Gata4 protein_coding protein_coding MGP_C3HHeJ_T0039543.1 MGP_C3HHeJ_G0021201.1 mouse_genomes_project 14 58065292 58096911 - MGP_C3HHeJ_P0039543 Gata4 protein_coding protein_coding MGP_C3HHeJ_T0038153.1 MGP_C3HHeJ_G0020782.1 mouse_genomes_project 14 13644954 13655538 - MGP_C3HHeJ_P0038153 Ndst2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002592.1 MGP_C3HHeJ_G0002490.1 mouse_genomes_project 14 48188463 48188940 + MGP_C3HHeJ_P0002592 Trav17 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002593.1 MGP_C3HHeJ_G0002490.1 mouse_genomes_project 14 48188463 48188940 + MGP_C3HHeJ_P0002593 Trav17 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002480.1 MGP_C3HHeJ_G0002392.1 mouse_genomes_project 14 48582182 48582245 + MGP_C3HHeJ_P0002480 Traj46 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039687.1 MGP_C3HHeJ_G0021258.1 mouse_genomes_project 14 64319098 64363686 - MGP_C3HHeJ_P0039687 Slc25a37 protein_coding protein_coding MGP_C3HHeJ_T0039688.1 MGP_C3HHeJ_G0021258.1 mouse_genomes_project 14 64319101 64363686 - Slc25a37 protein_coding retained_intron MGP_C3HHeJ_T0039689.1 MGP_C3HHeJ_G0021258.1 mouse_genomes_project 14 64321426 64363541 - MGP_C3HHeJ_P0039689 Slc25a37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0002598.1 MGP_C3HHeJ_G0002494.1 mouse_genomes_project 14 48283160 48283772 + MGP_C3HHeJ_P0002598 Trdv1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002599.1 MGP_C3HHeJ_G0002494.1 mouse_genomes_project 14 48283160 48283772 + MGP_C3HHeJ_P0002599 Trdv1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002482.1 MGP_C3HHeJ_G0002394.1 mouse_genomes_project 14 48583544 48583605 + MGP_C3HHeJ_P0002482 Traj44 TR_J_gene TR_J_gene MGP_C3HHeJ_T0003509.1 MGP_C3HHeJ_G0003186.1 mouse_genomes_project 14 70208488 70210687 - Gm15629 antisense antisense MGP_C3HHeJ_T0003496.1 MGP_C3HHeJ_G0003177.1 mouse_genomes_project 14 58967116 58976429 - antisense antisense MGP_C3HHeJ_T0038055.1 MGP_C3HHeJ_G0020749.1 mouse_genomes_project 14 8937483 8953439 - MGP_C3HHeJ_P0038055 Oxsm protein_coding protein_coding MGP_C3HHeJ_T0038056.1 MGP_C3HHeJ_G0020749.1 mouse_genomes_project 14 8938728 8946984 - MGP_C3HHeJ_P0038056 Oxsm protein_coding protein_coding MGP_C3HHeJ_T0038057.1 MGP_C3HHeJ_G0020749.1 mouse_genomes_project 14 8944290 8952807 - MGP_C3HHeJ_P0038057 Oxsm protein_coding protein_coding MGP_C3HHeJ_T0038058.1 MGP_C3HHeJ_G0020749.1 mouse_genomes_project 14 8945825 8952805 - MGP_C3HHeJ_P0038058 Oxsm protein_coding protein_coding MGP_C3HHeJ_T0100191.1 MGP_C3HHeJ_G0038385.1 mouse_genomes_project 14 46531958 46532048 + Gm23758 snoRNA snoRNA MGP_C3HHeJ_T0039362.1 MGP_C3HHeJ_G0021128.1 mouse_genomes_project 14 50635878 50638827 - MGP_C3HHeJ_P0039362 Gzme protein_coding protein_coding MGP_C3HHeJ_T0002514.1 MGP_C3HHeJ_G0002426.1 mouse_genomes_project 14 48619446 48619504 + MGP_C3HHeJ_P0002514 Traj9 TR_J_gene TR_J_gene MGP_C3HHeJ_T0100195.1 MGP_C3HHeJ_G0038389.1 mouse_genomes_project 14 51917576 51917696 - Gm23593 snoRNA snoRNA MGP_C3HHeJ_T0003457.1 MGP_C3HHeJ_G0003145.1 mouse_genomes_project 14 16034344 16092849 - Gm10248 antisense antisense MGP_C3HHeJ_T0009899.1 MGP_C3HHeJ_G0008032.1 mouse_genomes_project 14 43553661 43553766 - Gm22949 miRNA miRNA MGP_C3HHeJ_T0038845.1 MGP_C3HHeJ_G0020964.1 mouse_genomes_project 14 43012160 43033262 + MGP_C3HHeJ_P0038845 Ap5m1 protein_coding protein_coding MGP_C3HHeJ_T0009929.1 MGP_C3HHeJ_G0008062.1 mouse_genomes_project 14 101717681 101717810 - Mir6390 miRNA miRNA MGP_C3HHeJ_T0100229.1 MGP_C3HHeJ_G0038423.1 mouse_genomes_project 14 114951923 114952051 + Gm23669 snoRNA snoRNA MGP_C3HHeJ_T0098962.1 MGP_C3HHeJ_G0037156.1 mouse_genomes_project 14 108410277 108410369 - Gm22764 snRNA snRNA MGP_C3HHeJ_T0009897.1 MGP_C3HHeJ_G0008030.1 mouse_genomes_project 14 39434033 39434126 - Mir5131 miRNA miRNA MGP_C3HHeJ_T0000889.1 MGP_C3HHeJ_G0000829.1 mouse_genomes_project 14 64286659 64290220 - TEC TEC MGP_C3HHeJ_T0040025.1 MGP_C3HHeJ_G0021378.1 mouse_genomes_project 14 101182728 101206855 - MGP_C3HHeJ_P0040025 Rbm26 protein_coding protein_coding MGP_C3HHeJ_T0040026.1 MGP_C3HHeJ_G0021378.1 mouse_genomes_project 14 101190942 101252263 - MGP_C3HHeJ_P0040026 Rbm26 protein_coding protein_coding MGP_C3HHeJ_T0040027.1 MGP_C3HHeJ_G0021378.1 mouse_genomes_project 14 101190963 101252726 - MGP_C3HHeJ_P0040027 Rbm26 protein_coding protein_coding MGP_C3HHeJ_T0040028.1 MGP_C3HHeJ_G0021378.1 mouse_genomes_project 14 101191040 101252730 - MGP_C3HHeJ_P0040028 Rbm26 protein_coding protein_coding MGP_C3HHeJ_T0040029.1 MGP_C3HHeJ_G0021378.1 mouse_genomes_project 14 101192085 101252667 - MGP_C3HHeJ_P0040029 Rbm26 protein_coding protein_coding MGP_C3HHeJ_T0039538.1 MGP_C3HHeJ_G0021200.1 mouse_genomes_project 14 58003414 58015427 - MGP_C3HHeJ_P0039538 Neil2 protein_coding protein_coding MGP_C3HHeJ_T0038751.1 MGP_C3HHeJ_G0020945.1 mouse_genomes_project 14 40156623 40160632 + Gm15217 protein_coding processed_transcript MGP_C3HHeJ_T0038752.1 MGP_C3HHeJ_G0020945.1 mouse_genomes_project 14 40156676 40160822 + MGP_C3HHeJ_P0038752 Gm15217 protein_coding protein_coding MGP_C3HHeJ_T0038753.1 MGP_C3HHeJ_G0020945.1 mouse_genomes_project 14 40158334 40160582 + Gm15217 protein_coding processed_transcript MGP_C3HHeJ_T0003469.1 MGP_C3HHeJ_G0003156.1 mouse_genomes_project 14 32433921 32497768 + Nrg3os antisense antisense MGP_C3HHeJ_T0098038.1 MGP_C3HHeJ_G0036250.1 mouse_genomes_project 14 61581101 61581191 - Gm23899 rRNA rRNA MGP_C3HHeJ_T0039953.1 MGP_C3HHeJ_G0021355.1 mouse_genomes_project 14 93595741 93983385 - MGP_C3HHeJ_P0039953 Dach1 protein_coding protein_coding MGP_C3HHeJ_T0039954.1 MGP_C3HHeJ_G0021355.1 mouse_genomes_project 14 93595743 93983385 - MGP_C3HHeJ_P0039954 Dach1 protein_coding protein_coding MGP_C3HHeJ_T0039955.1 MGP_C3HHeJ_G0021355.1 mouse_genomes_project 14 93634699 93984179 - Dach1 protein_coding retained_intron MGP_C3HHeJ_T0039364.1 MGP_C3HHeJ_G0021130.1 mouse_genomes_project 14 50675594 50678599 - MGP_C3HHeJ_P0039364 Gzmg protein_coding protein_coding MGP_C3HHeJ_T0100225.1 MGP_C3HHeJ_G0038419.1 mouse_genomes_project 14 102625394 102625501 - Gm24634 snoRNA snoRNA MGP_C3HHeJ_T0038296.1 MGP_C3HHeJ_G0020815.1 mouse_genomes_project 14 19328520 19335313 + MGP_C3HHeJ_P0038296 Duxbl2 protein_coding protein_coding MGP_C3HHeJ_T0038301.1 MGP_C3HHeJ_G0020815.1 mouse_genomes_project 14 19331524 19338703 + MGP_C3HHeJ_P0038301 Duxbl2 protein_coding protein_coding MGP_C3HHeJ_T0039685.1 MGP_C3HHeJ_G0021256.1 mouse_genomes_project 14 64248675 64252392 + MGP_C3HHeJ_P0039685 Nkx2-6 protein_coding protein_coding MGP_C3HHeJ_T0006641.1 MGP_C3HHeJ_G0005481.1 mouse_genomes_project 14 71588087 71594385 - 4930444M15Rik lincRNA lincRNA MGP_C3HHeJ_T0012848.1 MGP_C3HHeJ_G0010952.1 mouse_genomes_project 14 11850879 11851362 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039326.1 MGP_C3HHeJ_G0021105.1 mouse_genomes_project 14 50153155 50160239 + MGP_C3HHeJ_P0039326 Gmpr2 protein_coding protein_coding MGP_C3HHeJ_T0006644.1 MGP_C3HHeJ_G0005483.1 mouse_genomes_project 14 75018030 75151595 + Gm6999 lincRNA lincRNA MGP_C3HHeJ_T0003502.1 MGP_C3HHeJ_G0003183.1 mouse_genomes_project 14 64427434 64430797 - Gm27221 antisense antisense MGP_C3HHeJ_T0002569.1 MGP_C3HHeJ_G0002472.1 mouse_genomes_project 14 47077667 47078136 + MGP_C3HHeJ_P0002569 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002570.1 MGP_C3HHeJ_G0002472.1 mouse_genomes_project 14 47077704 47078136 + MGP_C3HHeJ_P0002570 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039527.1 MGP_C3HHeJ_G0021196.1 mouse_genomes_project 14 57849435 57853203 - MGP_C3HHeJ_P0039527 Defb30 protein_coding protein_coding MGP_C3HHeJ_T0039528.1 MGP_C3HHeJ_G0021196.1 mouse_genomes_project 14 57849839 57867026 - MGP_C3HHeJ_P0039528 Defb30 protein_coding protein_coding MGP_C3HHeJ_T0039529.1 MGP_C3HHeJ_G0021196.1 mouse_genomes_project 14 57851163 57867031 - MGP_C3HHeJ_P0039529 Defb30 protein_coding protein_coding MGP_C3HHeJ_T0039530.1 MGP_C3HHeJ_G0021196.1 mouse_genomes_project 14 57851249 57853216 - MGP_C3HHeJ_P0039530 Defb30 protein_coding protein_coding MGP_C3HHeJ_T0039962.1 MGP_C3HHeJ_G0021361.1 mouse_genomes_project 14 95764752 96049124 - MGP_C3HHeJ_P0039962 Klf12 protein_coding protein_coding MGP_C3HHeJ_T0039182.1 MGP_C3HHeJ_G0021076.1 mouse_genomes_project 14 49392861 49395438 + MGP_C3HHeJ_P0039182 Cmtm5 protein_coding protein_coding MGP_C3HHeJ_T0039734.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65192100 65240762 - MGP_C3HHeJ_P0039734 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039735.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65194844 65237768 - MGP_C3HHeJ_P0039735 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039736.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65194858 65240762 - MGP_C3HHeJ_P0039736 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039737.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65197333 65199787 - Slc39a14 protein_coding retained_intron MGP_C3HHeJ_T0039738.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65199483 65202472 - Slc39a14 protein_coding retained_intron MGP_C3HHeJ_T0039739.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65202505 65240751 - Slc39a14 protein_coding retained_intron MGP_C3HHeJ_T0039740.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65203657 65237770 - Slc39a14 protein_coding retained_intron MGP_C3HHeJ_T0039741.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65204339 65223567 - MGP_C3HHeJ_P0039741 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039742.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65205012 65240731 - MGP_C3HHeJ_P0039742 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039743.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65205046 65212297 - MGP_C3HHeJ_P0039743 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039744.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65205107 65240752 - MGP_C3HHeJ_P0039744 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039745.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65207279 65220012 - MGP_C3HHeJ_P0039745 Slc39a14 protein_coding protein_coding MGP_C3HHeJ_T0039746.1 MGP_C3HHeJ_G0021277.1 mouse_genomes_project 14 65219570 65240762 - Slc39a14 protein_coding retained_intron MGP_C3HHeJ_T0002554.1 MGP_C3HHeJ_G0002461.1 mouse_genomes_project 14 46685760 46686733 + MGP_C3HHeJ_P0002554 Trav1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002555.1 MGP_C3HHeJ_G0002461.1 mouse_genomes_project 14 46685799 46686733 + MGP_C3HHeJ_P0002555 Trav1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002602.1 MGP_C3HHeJ_G0002496.1 mouse_genomes_project 14 48350876 48351526 + MGP_C3HHeJ_P0002602 Trdv2-2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002466.1 MGP_C3HHeJ_G0002382.1 mouse_genomes_project 14 48564842 48564904 + MGP_C3HHeJ_P0002466 Traj59 TR_J_gene TR_J_gene MGP_C3HHeJ_T0002467.1 MGP_C3HHeJ_G0002382.1 mouse_genomes_project 14 48564842 48564906 + Traj59 TR_J_gene processed_transcript MGP_C3HHeJ_T0039961.1 MGP_C3HHeJ_G0021360.1 mouse_genomes_project 14 95142650 95157365 + MGP_C3HHeJ_P0039961 Klf5 protein_coding protein_coding MGP_C3HHeJ_T0003460.1 MGP_C3HHeJ_G0003147.1 mouse_genomes_project 14 18486040 18492185 - Zmiz1os1 antisense antisense MGP_C3HHeJ_T0012862.1 MGP_C3HHeJ_G0010966.1 mouse_genomes_project 14 33560209 33562340 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002464.1 MGP_C3HHeJ_G0002380.1 mouse_genomes_project 14 48536179 48536230 + MGP_C3HHeJ_P0002464 Trdj1 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039566.1 MGP_C3HHeJ_G0021212.1 mouse_genomes_project 14 58954145 58965490 + MGP_C3HHeJ_P0039566 Prss51 protein_coding protein_coding MGP_C3HHeJ_T0039567.1 MGP_C3HHeJ_G0021212.1 mouse_genomes_project 14 58961517 58965486 + MGP_C3HHeJ_P0039567 Prss51 protein_coding protein_coding MGP_C3HHeJ_T0039568.1 MGP_C3HHeJ_G0021212.1 mouse_genomes_project 14 58961547 58964928 + MGP_C3HHeJ_P0039568 Prss51 protein_coding protein_coding MGP_C3HHeJ_T0039370.1 MGP_C3HHeJ_G0021136.1 mouse_genomes_project 14 50927059 51052463 + MGP_C3HHeJ_P0039370 Rnf17 protein_coding protein_coding MGP_C3HHeJ_T0038200.1 MGP_C3HHeJ_G0020791.1 mouse_genomes_project 14 14698834 14743476 + MGP_C3HHeJ_P0038200 Samd8 protein_coding protein_coding MGP_C3HHeJ_T0038201.1 MGP_C3HHeJ_G0020791.1 mouse_genomes_project 14 14698851 14743476 + MGP_C3HHeJ_P0038201 Samd8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038202.1 MGP_C3HHeJ_G0020791.1 mouse_genomes_project 14 14699104 14748902 + MGP_C3HHeJ_P0038202 Samd8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038203.1 MGP_C3HHeJ_G0020791.1 mouse_genomes_project 14 14699855 14748896 + MGP_C3HHeJ_P0038203 Samd8 protein_coding protein_coding MGP_C3HHeJ_T0038204.1 MGP_C3HHeJ_G0020791.1 mouse_genomes_project 14 14742045 14743149 + Samd8 protein_coding retained_intron MGP_C3HHeJ_T0039681.1 MGP_C3HHeJ_G0021253.1 mouse_genomes_project 14 63642641 63661301 - MGP_C3HHeJ_P0039681 Adamdec1 protein_coding protein_coding MGP_C3HHeJ_T0039537.1 MGP_C3HHeJ_G0021199.1 mouse_genomes_project 14 57964359 57998764 - MGP_C3HHeJ_P0039537 Fdft1 protein_coding protein_coding MGP_C3HHeJ_T0002541.1 MGP_C3HHeJ_G0002451.1 mouse_genomes_project 14 48592192 48592257 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0040086.1 MGP_C3HHeJ_G0021404.1 mouse_genomes_project 14 117813851 118030107 + MGP_C3HHeJ_P0040086 Farp1 protein_coding protein_coding MGP_C3HHeJ_T0040087.1 MGP_C3HHeJ_G0021404.1 mouse_genomes_project 14 117814215 118079645 + MGP_C3HHeJ_P0040087 Farp1 protein_coding protein_coding MGP_C3HHeJ_T0040088.1 MGP_C3HHeJ_G0021404.1 mouse_genomes_project 14 117886434 118034374 + Farp1 protein_coding processed_transcript MGP_C3HHeJ_T0040089.1 MGP_C3HHeJ_G0021404.1 mouse_genomes_project 14 118050851 118063945 + Farp1 protein_coding retained_intron MGP_C3HHeJ_T0012880.1 MGP_C3HHeJ_G0010984.1 mouse_genomes_project 14 49265489 49265919 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039357.1 MGP_C3HHeJ_G0021123.1 mouse_genomes_project 14 50565264 50567776 + MGP_C3HHeJ_P0039357 Mcpt2 protein_coding protein_coding MGP_C3HHeJ_T0009907.1 MGP_C3HHeJ_G0008040.1 mouse_genomes_project 14 56386735 56386828 - Mir16-1 miRNA miRNA MGP_C3HHeJ_T0002473.1 MGP_C3HHeJ_G0002387.1 mouse_genomes_project 14 48575045 48575111 + MGP_C3HHeJ_P0002473 Traj52 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039756.1 MGP_C3HHeJ_G0021284.1 mouse_genomes_project 14 65443181 65446864 + MGP_C3HHeJ_P0039756 Reep4 protein_coding protein_coding MGP_C3HHeJ_T0039368.1 MGP_C3HHeJ_G0021134.1 mouse_genomes_project 14 50772026 50775431 - MGP_C3HHeJ_P0039368 Gzmb protein_coding protein_coding MGP_C3HHeJ_T0039814.1 MGP_C3HHeJ_G0021298.1 mouse_genomes_project 14 68167125 68172533 + MGP_C3HHeJ_P0039814 Lpar6 protein_coding protein_coding MGP_C3HHeJ_T0038072.1 MGP_C3HHeJ_G0020754.1 mouse_genomes_project 14 10904185 10935831 - MGP_C3HHeJ_P0038072 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012902.1 MGP_C3HHeJ_G0011006.1 mouse_genomes_project 14 95135176 95135609 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039838.1 MGP_C3HHeJ_G0021307.1 mouse_genomes_project 14 70021297 70059394 + MGP_C3HHeJ_P0039838 5031414D18Rik protein_coding protein_coding MGP_C3HHeJ_T0038879.1 MGP_C3HHeJ_G0020983.1 mouse_genomes_project 14 44427122 44428061 + MGP_C3HHeJ_P0038879 Olfr736 protein_coding protein_coding MGP_C3HHeJ_T0039521.1 MGP_C3HHeJ_G0021191.1 mouse_genomes_project 14 57476269 57563379 - MGP_C3HHeJ_P0039521 Ints6 protein_coding protein_coding MGP_C3HHeJ_T0039522.1 MGP_C3HHeJ_G0021191.1 mouse_genomes_project 14 57494720 57562989 - MGP_C3HHeJ_P0039522 Ints6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006650.1 MGP_C3HHeJ_G0005488.1 mouse_genomes_project 14 115016358 115037259 + Gm26791 lincRNA lincRNA MGP_C3HHeJ_T0039544.1 MGP_C3HHeJ_G0021202.1 mouse_genomes_project 14 58204285 58248972 - MGP_C3HHeJ_P0039544 Blk protein_coding protein_coding MGP_C3HHeJ_T0038148.1 MGP_C3HHeJ_G0020778.1 mouse_genomes_project 14 13594901 13616200 + MGP_C3HHeJ_P0038148 Sec24c protein_coding protein_coding MGP_C3HHeJ_T0038149.1 MGP_C3HHeJ_G0020778.1 mouse_genomes_project 14 13594913 13616207 + MGP_C3HHeJ_P0038149 Sec24c protein_coding unknown_likely_coding MGP_C3HHeJ_T0038536.1 MGP_C3HHeJ_G0020869.1 mouse_genomes_project 14 24954602 25039363 - MGP_C3HHeJ_P0038536 Ankrd28 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038537.1 MGP_C3HHeJ_G0020869.1 mouse_genomes_project 14 24955853 25090960 - MGP_C3HHeJ_P0038537 Ankrd28 protein_coding protein_coding MGP_C3HHeJ_T0012888.1 MGP_C3HHeJ_G0010992.1 mouse_genomes_project 14 58260507 58261505 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098924.1 MGP_C3HHeJ_G0037118.1 mouse_genomes_project 14 42576704 42576808 + Gm23469 snRNA snRNA MGP_C3HHeJ_T0039099.1 MGP_C3HHeJ_G0021051.1 mouse_genomes_project 14 48835865 48838754 + MGP_C3HHeJ_P0039099 Mrpl52 protein_coding protein_coding MGP_C3HHeJ_T0039100.1 MGP_C3HHeJ_G0021051.1 mouse_genomes_project 14 48835889 48836745 + Mrpl52 protein_coding retained_intron MGP_C3HHeJ_T0039101.1 MGP_C3HHeJ_G0021051.1 mouse_genomes_project 14 48835890 48836405 + Mrpl52 protein_coding retained_intron MGP_C3HHeJ_T0039102.1 MGP_C3HHeJ_G0021051.1 mouse_genomes_project 14 48836007 48838772 + Mrpl52 protein_coding retained_intron MGP_C3HHeJ_T0039103.1 MGP_C3HHeJ_G0021051.1 mouse_genomes_project 14 48836018 48838775 + MGP_C3HHeJ_P0039103 Mrpl52 protein_coding protein_coding MGP_C3HHeJ_T0038320.1 MGP_C3HHeJ_G0020818.1 mouse_genomes_project 14 19675693 19728099 + MGP_C3HHeJ_P0038320 Dennd6a protein_coding protein_coding MGP_C3HHeJ_T0038321.1 MGP_C3HHeJ_G0020818.1 mouse_genomes_project 14 19675710 19734008 + MGP_C3HHeJ_P0038321 Dennd6a protein_coding protein_coding MGP_C3HHeJ_T0098928.1 MGP_C3HHeJ_G0037122.1 mouse_genomes_project 14 43505591 43505730 - Gm22116 snRNA snRNA MGP_C3HHeJ_T0039347.1 MGP_C3HHeJ_G0021116.1 mouse_genomes_project 14 50317042 50326195 + MGP_C3HHeJ_P0039347 Nfatc4 protein_coding protein_coding MGP_C3HHeJ_T0039348.1 MGP_C3HHeJ_G0021116.1 mouse_genomes_project 14 50317042 50326195 + MGP_C3HHeJ_P0039348 Nfatc4 protein_coding protein_coding MGP_C3HHeJ_T0038924.1 MGP_C3HHeJ_G0021007.1 mouse_genomes_project 14 45122545 45123258 - MGP_C3HHeJ_P0038924 Rnase11 protein_coding protein_coding MGP_C3HHeJ_T0006611.1 MGP_C3HHeJ_G0005459.1 mouse_genomes_project 14 44944988 44951947 + Gm26782 lincRNA lincRNA MGP_C3HHeJ_T0006612.1 MGP_C3HHeJ_G0005459.1 mouse_genomes_project 14 44945000 44955044 + Gm26782 lincRNA lincRNA MGP_C3HHeJ_T0098916.1 MGP_C3HHeJ_G0037110.1 mouse_genomes_project 14 13622888 13622995 + Gm25328 snRNA snRNA MGP_C3HHeJ_T0039365.1 MGP_C3HHeJ_G0021131.1 mouse_genomes_project 14 50684816 50693616 - MGP_C3HHeJ_P0039365 Gzmn protein_coding protein_coding MGP_C3HHeJ_T0039525.1 MGP_C3HHeJ_G0021194.1 mouse_genomes_project 14 57812353 57815302 + MGP_C3HHeJ_P0039525 Defb47 protein_coding protein_coding MGP_C3HHeJ_T0040048.1 MGP_C3HHeJ_G0021388.1 mouse_genomes_project 14 113530809 114619341 + MGP_C3HHeJ_P0040048 Gpc6 protein_coding protein_coding MGP_C3HHeJ_T0040049.1 MGP_C3HHeJ_G0021388.1 mouse_genomes_project 14 113530827 114255152 + Gpc6 protein_coding retained_intron MGP_C3HHeJ_T0040050.1 MGP_C3HHeJ_G0021388.1 mouse_genomes_project 14 113530942 114615480 + MGP_C3HHeJ_P0040050 Gpc6 protein_coding protein_coding MGP_C3HHeJ_T0040051.1 MGP_C3HHeJ_G0021388.1 mouse_genomes_project 14 113531043 114614342 + MGP_C3HHeJ_P0040051 Gpc6 protein_coding protein_coding MGP_C3HHeJ_T0039573.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59702603 59839503 - MGP_C3HHeJ_P0039573 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039574.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59705630 59713285 - Hmbox1 protein_coding processed_transcript MGP_C3HHeJ_T0039575.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59713206 59839500 - MGP_C3HHeJ_P0039575 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039576.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59713206 59839524 - MGP_C3HHeJ_P0039576 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039577.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59713802 59839285 - MGP_C3HHeJ_P0039577 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039578.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59714157 59795296 - MGP_C3HHeJ_P0039578 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039579.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59716047 59839509 - MGP_C3HHeJ_P0039579 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039580.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59716294 59839500 - MGP_C3HHeJ_P0039580 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039581.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59716327 59839500 - MGP_C3HHeJ_P0039581 Hmbox1 protein_coding protein_coding MGP_C3HHeJ_T0039582.1 MGP_C3HHeJ_G0021216.1 mouse_genomes_project 14 59775796 59839500 - Hmbox1 protein_coding retained_intron MGP_C3HHeJ_T0009919.1 MGP_C3HHeJ_G0008052.1 mouse_genomes_project 14 65339276 65339358 + Mir320 miRNA miRNA MGP_C3HHeJ_T0039342.1 MGP_C3HHeJ_G0021113.1 mouse_genomes_project 14 50260517 50263032 + MGP_C3HHeJ_P0039342 Ltb4r1 protein_coding protein_coding MGP_C3HHeJ_T0039768.1 MGP_C3HHeJ_G0021290.1 mouse_genomes_project 14 65551399 65557169 - MGP_C3HHeJ_P0039768 Npm2 protein_coding protein_coding MGP_C3HHeJ_T0009927.1 MGP_C3HHeJ_G0008060.1 mouse_genomes_project 14 98958570 98958654 - Mir5130 miRNA miRNA MGP_C3HHeJ_T0037985.1 MGP_C3HHeJ_G0020724.1 mouse_genomes_project 14 488304 504179 - MGP_C3HHeJ_P0037985 Pdhb protein_coding protein_coding MGP_C3HHeJ_T0003454.1 MGP_C3HHeJ_G0003144.1 mouse_genomes_project 14 14689846 14694641 + Gm15935 antisense antisense MGP_C3HHeJ_T0003455.1 MGP_C3HHeJ_G0003144.1 mouse_genomes_project 14 14689868 14694936 + Gm15935 antisense antisense MGP_C3HHeJ_T0003456.1 MGP_C3HHeJ_G0003144.1 mouse_genomes_project 14 14689892 14694387 + Gm15935 antisense antisense MGP_C3HHeJ_T0038130.1 MGP_C3HHeJ_G0020773.1 mouse_genomes_project 14 13397187 13412182 - MGP_C3HHeJ_P0038130 Mss51 protein_coding protein_coding MGP_C3HHeJ_T0002451.1 MGP_C3HHeJ_G0002369.1 mouse_genomes_project 14 48551475 48557586 + MGP_C3HHeJ_P0002451 Trdc TR_C_gene TR_C_gene MGP_C3HHeJ_T0039110.1 MGP_C3HHeJ_G0021053.1 mouse_genomes_project 14 48878556 48888500 + MGP_C3HHeJ_P0039110 Lrp10 protein_coding protein_coding MGP_C3HHeJ_T0100197.1 MGP_C3HHeJ_G0038391.1 mouse_genomes_project 14 57318733 57318863 + Gm24625 snoRNA snoRNA MGP_C3HHeJ_T0038358.1 MGP_C3HHeJ_G0020833.1 mouse_genomes_project 14 23151490 23158257 + MGP_C3HHeJ_P0038358 Selk protein_coding protein_coding MGP_C3HHeJ_T0038359.1 MGP_C3HHeJ_G0020833.1 mouse_genomes_project 14 23151618 23156780 + Selk protein_coding processed_transcript MGP_C3HHeJ_T0038216.1 MGP_C3HHeJ_G0020795.1 mouse_genomes_project 14 14976431 16052236 + MGP_C3HHeJ_P0038216 1700112E06Rik protein_coding protein_coding MGP_C3HHeJ_T0038217.1 MGP_C3HHeJ_G0020795.1 mouse_genomes_project 14 14976540 15820012 + MGP_C3HHeJ_P0038217 1700112E06Rik protein_coding protein_coding MGP_C3HHeJ_T0038218.1 MGP_C3HHeJ_G0020795.1 mouse_genomes_project 14 14976567 16052236 + MGP_C3HHeJ_P0038218 1700112E06Rik protein_coding protein_coding MGP_C3HHeJ_T0038219.1 MGP_C3HHeJ_G0020795.1 mouse_genomes_project 14 14976567 15697370 + MGP_C3HHeJ_P0038219 1700112E06Rik protein_coding protein_coding MGP_C3HHeJ_T0038220.1 MGP_C3HHeJ_G0020795.1 mouse_genomes_project 14 15277125 15557480 + 1700112E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0038221.1 MGP_C3HHeJ_G0020795.1 mouse_genomes_project 14 15550771 15573162 + 1700112E06Rik protein_coding processed_transcript MGP_C3HHeJ_T0040030.1 MGP_C3HHeJ_G0021379.1 mouse_genomes_project 14 101335729 101388824 + MGP_C3HHeJ_P0040030 Ndfip2 protein_coding protein_coding MGP_C3HHeJ_T0040031.1 MGP_C3HHeJ_G0021379.1 mouse_genomes_project 14 101335874 101388830 + MGP_C3HHeJ_P0040031 Ndfip2 protein_coding protein_coding MGP_C3HHeJ_T0040032.1 MGP_C3HHeJ_G0021379.1 mouse_genomes_project 14 101335974 101373255 + Ndfip2 protein_coding retained_intron MGP_C3HHeJ_T0040033.1 MGP_C3HHeJ_G0021379.1 mouse_genomes_project 14 101370594 101388393 + Ndfip2 protein_coding retained_intron MGP_C3HHeJ_T0040034.1 MGP_C3HHeJ_G0021379.1 mouse_genomes_project 14 101370990 101388327 + Ndfip2 protein_coding retained_intron MGP_C3HHeJ_T0040035.1 MGP_C3HHeJ_G0021379.1 mouse_genomes_project 14 101372855 101388393 + Ndfip2 protein_coding processed_transcript MGP_C3HHeJ_T0038689.1 MGP_C3HHeJ_G0020921.1 mouse_genomes_project 14 30523878 30529511 + MGP_C3HHeJ_P0038689 Lrit2 protein_coding protein_coding MGP_C3HHeJ_T0002494.1 MGP_C3HHeJ_G0002406.1 mouse_genomes_project 14 48597667 48597724 + MGP_C3HHeJ_P0002494 Traj31 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039836.1 MGP_C3HHeJ_G0021306.1 mouse_genomes_project 14 69762348 69953951 - MGP_C3HHeJ_P0039836 Lrch1 protein_coding protein_coding MGP_C3HHeJ_T0039837.1 MGP_C3HHeJ_G0021306.1 mouse_genomes_project 14 69770993 69953734 - MGP_C3HHeJ_P0039837 Lrch1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0098943.1 MGP_C3HHeJ_G0037137.1 mouse_genomes_project 14 75245998 75246105 - Gm25935 snRNA snRNA MGP_C3HHeJ_T0012911.1 MGP_C3HHeJ_G0011015.1 mouse_genomes_project 14 119369760 119370399 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038020.1 MGP_C3HHeJ_G0020734.1 mouse_genomes_project 14 4775097 4779082 - MGP_C3HHeJ_P0038020 Fezf2 protein_coding protein_coding MGP_C3HHeJ_T0009888.1 MGP_C3HHeJ_G0008021.1 mouse_genomes_project 14 17121792 17121846 + Mir7210 miRNA miRNA MGP_C3HHeJ_T0038012.1 MGP_C3HHeJ_G0020732.1 mouse_genomes_project 14 3970784 4686634 + MGP_C3HHeJ_P0038012 Ptprg protein_coding protein_coding MGP_C3HHeJ_T0038013.1 MGP_C3HHeJ_G0020732.1 mouse_genomes_project 14 3970805 4683376 + MGP_C3HHeJ_P0038013 Ptprg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038014.1 MGP_C3HHeJ_G0020732.1 mouse_genomes_project 14 3970833 4401284 + Ptprg protein_coding retained_intron MGP_C3HHeJ_T0038015.1 MGP_C3HHeJ_G0020732.1 mouse_genomes_project 14 4530717 4561382 + MGP_C3HHeJ_P0038015 Ptprg protein_coding protein_coding MGP_C3HHeJ_T0038016.1 MGP_C3HHeJ_G0020732.1 mouse_genomes_project 14 4632243 4683375 + MGP_C3HHeJ_P0038016 Ptprg protein_coding protein_coding MGP_C3HHeJ_T0038017.1 MGP_C3HHeJ_G0020732.1 mouse_genomes_project 14 4661159 4665720 + Ptprg protein_coding processed_transcript MGP_C3HHeJ_T0039711.1 MGP_C3HHeJ_G0021266.1 mouse_genomes_project 14 64578950 64596526 - MGP_C3HHeJ_P0039711 Chmp7 protein_coding protein_coding MGP_C3HHeJ_T0039718.1 MGP_C3HHeJ_G0021273.1 mouse_genomes_project 14 65030121 65035219 - MGP_C3HHeJ_P0039718 9930012K11Rik protein_coding protein_coding MGP_C3HHeJ_T0039719.1 MGP_C3HHeJ_G0021273.1 mouse_genomes_project 14 65030121 65035219 - MGP_C3HHeJ_P0039719 9930012K11Rik protein_coding protein_coding MGP_C3HHeJ_T0039720.1 MGP_C3HHeJ_G0021273.1 mouse_genomes_project 14 65030124 65032635 - 9930012K11Rik protein_coding retained_intron MGP_C3HHeJ_T0039721.1 MGP_C3HHeJ_G0021273.1 mouse_genomes_project 14 65030614 65032184 - MGP_C3HHeJ_P0039721 9930012K11Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039722.1 MGP_C3HHeJ_G0021273.1 mouse_genomes_project 14 65030747 65032527 - 9930012K11Rik protein_coding retained_intron MGP_C3HHeJ_T0038432.1 MGP_C3HHeJ_G0020851.1 mouse_genomes_project 14 24248250 24254906 - MGP_C3HHeJ_P0038432 Gnl3 protein_coding protein_coding MGP_C3HHeJ_T0038732.1 MGP_C3HHeJ_G0020939.1 mouse_genomes_project 14 39036535 39074524 - MGP_C3HHeJ_P0038732 Ero1l protein_coding protein_coding MGP_C3HHeJ_T0038160.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13963398 13984396 - MGP_C3HHeJ_P0038160 Ap3m1 protein_coding protein_coding MGP_C3HHeJ_T0038161.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13963415 13966523 - Ap3m1 protein_coding processed_transcript MGP_C3HHeJ_T0038162.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13963490 13966737 - Ap3m1 protein_coding processed_transcript MGP_C3HHeJ_T0038163.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13967970 13984168 - MGP_C3HHeJ_P0038163 Ap3m1 protein_coding protein_coding MGP_C3HHeJ_T0038164.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13970087 13984133 - MGP_C3HHeJ_P0038164 Ap3m1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038165.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13970131 13984409 - Ap3m1 protein_coding processed_transcript MGP_C3HHeJ_T0038166.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13972932 13984023 - Ap3m1 protein_coding processed_transcript MGP_C3HHeJ_T0038167.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13972959 13984454 - MGP_C3HHeJ_P0038167 Ap3m1 protein_coding protein_coding MGP_C3HHeJ_T0038168.1 MGP_C3HHeJ_G0020786.1 mouse_genomes_project 14 13976598 13984066 - MGP_C3HHeJ_P0038168 Ap3m1 protein_coding protein_coding MGP_C3HHeJ_T0003510.1 MGP_C3HHeJ_G0003187.1 mouse_genomes_project 14 70885365 70886951 - Gm4285 antisense antisense MGP_C3HHeJ_T0038508.1 MGP_C3HHeJ_G0020863.1 mouse_genomes_project 14 24609294 24686489 - MGP_C3HHeJ_P0038508 Sh3bp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038509.1 MGP_C3HHeJ_G0020863.1 mouse_genomes_project 14 24623202 24667507 - MGP_C3HHeJ_P0038509 Sh3bp5 protein_coding protein_coding MGP_C3HHeJ_T0038510.1 MGP_C3HHeJ_G0020863.1 mouse_genomes_project 14 24623202 24686476 - MGP_C3HHeJ_P0038510 Sh3bp5 protein_coding protein_coding MGP_C3HHeJ_T0038511.1 MGP_C3HHeJ_G0020863.1 mouse_genomes_project 14 24627012 24657215 - Sh3bp5 protein_coding processed_transcript MGP_C3HHeJ_T0039963.1 MGP_C3HHeJ_G0021362.1 mouse_genomes_project 14 97108646 97111026 - MGP_C3HHeJ_P0039963 Prr30 protein_coding protein_coding MGP_C3HHeJ_T0039964.1 MGP_C3HHeJ_G0021362.1 mouse_genomes_project 14 97108654 97111287 - MGP_C3HHeJ_P0039964 Prr30 protein_coding protein_coding MGP_C3HHeJ_T0017185.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71755280 71770697 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0017186.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71759879 71770620 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0017187.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71759892 71770636 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0017188.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71759892 71762144 + 1700108F19Rik processed_transcript retained_intron MGP_C3HHeJ_T0017189.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71759920 71770623 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0017190.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71759923 71762702 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0017191.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71759967 71762702 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0017192.1 MGP_C3HHeJ_G0015039.1 mouse_genomes_project 14 71764067 71770415 + 1700108F19Rik processed_transcript lincRNA MGP_C3HHeJ_T0039504.1 MGP_C3HHeJ_G0021183.1 mouse_genomes_project 14 56113347 56188898 - MGP_C3HHeJ_P0039504 Kpna3 protein_coding protein_coding MGP_C3HHeJ_T0038494.1 MGP_C3HHeJ_G0020858.1 mouse_genomes_project 14 24464925 24477275 + MGP_C3HHeJ_P0038494 Sema3g protein_coding protein_coding MGP_C3HHeJ_T0009885.1 MGP_C3HHeJ_G0008018.1 mouse_genomes_project 14 10885687 10885766 + Gm44469 miRNA miRNA MGP_C3HHeJ_T0006569.1 MGP_C3HHeJ_G0005432.1 mouse_genomes_project 14 998621 1005526 + 4930455B14Rik lincRNA lincRNA MGP_C3HHeJ_T0006570.1 MGP_C3HHeJ_G0005432.1 mouse_genomes_project 14 998621 1005584 + 4930455B14Rik lincRNA lincRNA MGP_C3HHeJ_T0039188.1 MGP_C3HHeJ_G0021078.1 mouse_genomes_project 14 49430001 49451893 - MGP_C3HHeJ_P0039188 Myh7 protein_coding protein_coding MGP_C3HHeJ_T0039190.1 MGP_C3HHeJ_G0021078.1 mouse_genomes_project 14 49439988 49446139 - Myh7 protein_coding retained_intron MGP_C3HHeJ_T0039191.1 MGP_C3HHeJ_G0021078.1 mouse_genomes_project 14 49451711 49453544 - MGP_C3HHeJ_P0039191 Myh7 protein_coding protein_coding MGP_C3HHeJ_T0012890.1 MGP_C3HHeJ_G0010994.1 mouse_genomes_project 14 64644561 64646624 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039129.1 MGP_C3HHeJ_G0021063.1 mouse_genomes_project 14 49070465 49077769 + MGP_C3HHeJ_P0039129 Gm17606 protein_coding protein_coding MGP_C3HHeJ_T0000893.1 MGP_C3HHeJ_G0000833.1 mouse_genomes_project 14 66292920 66293460 - TEC TEC MGP_C3HHeJ_T0039570.1 MGP_C3HHeJ_G0021214.1 mouse_genomes_project 14 58995334 59339206 - MGP_C3HHeJ_P0039570 Msra protein_coding protein_coding MGP_C3HHeJ_T0098367.1 MGP_C3HHeJ_G0036575.1 mouse_genomes_project 14 51264141 51265439 - C030013D06Rik sense_intronic sense_intronic MGP_C3HHeJ_T0038996.1 MGP_C3HHeJ_G0021031.1 mouse_genomes_project 14 46329005 46358778 - MGP_C3HHeJ_P0038996 Hnrnpc protein_coding protein_coding MGP_C3HHeJ_T0038396.1 MGP_C3HHeJ_G0020842.1 mouse_genomes_project 14 23937793 24041298 + MGP_C3HHeJ_P0038396 Sfmbt1 protein_coding protein_coding MGP_C3HHeJ_T0038397.1 MGP_C3HHeJ_G0020842.1 mouse_genomes_project 14 23938111 24038419 + MGP_C3HHeJ_P0038397 Sfmbt1 protein_coding protein_coding MGP_C3HHeJ_T0038398.1 MGP_C3HHeJ_G0020842.1 mouse_genomes_project 14 23938559 24046052 + MGP_C3HHeJ_P0038398 Sfmbt1 protein_coding protein_coding MGP_C3HHeJ_T0038399.1 MGP_C3HHeJ_G0020842.1 mouse_genomes_project 14 23939441 24041681 + MGP_C3HHeJ_P0038399 Sfmbt1 protein_coding protein_coding MGP_C3HHeJ_T0038400.1 MGP_C3HHeJ_G0020842.1 mouse_genomes_project 14 23999364 24041680 + MGP_C3HHeJ_P0038400 Sfmbt1 protein_coding protein_coding MGP_C3HHeJ_T0038401.1 MGP_C3HHeJ_G0020842.1 mouse_genomes_project 14 24019211 24020967 + Sfmbt1 protein_coding retained_intron MGP_C3HHeJ_T0006593.1 MGP_C3HHeJ_G0005445.1 mouse_genomes_project 14 21656235 21659556 - Gm2670 lincRNA lincRNA MGP_C3HHeJ_T0039597.1 MGP_C3HHeJ_G0021226.1 mouse_genomes_project 14 60733922 60746016 + MGP_C3HHeJ_P0039597 Pbk protein_coding protein_coding MGP_C3HHeJ_T0039598.1 MGP_C3HHeJ_G0021226.1 mouse_genomes_project 14 60734022 60741302 + Pbk protein_coding processed_transcript MGP_C3HHeJ_T0039599.1 MGP_C3HHeJ_G0021226.1 mouse_genomes_project 14 60734317 60742068 + MGP_C3HHeJ_P0039599 Pbk protein_coding protein_coding MGP_C3HHeJ_T0012837.1 MGP_C3HHeJ_G0010941.1 mouse_genomes_project 14 106507 107330 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009922.1 MGP_C3HHeJ_G0008055.1 mouse_genomes_project 14 73310612 73310718 - Mir1971 miRNA miRNA MGP_C3HHeJ_T0039390.1 MGP_C3HHeJ_G0021147.1 mouse_genomes_project 14 51694338 51705744 - MGP_C3HHeJ_P0039390 Gjb6 protein_coding protein_coding MGP_C3HHeJ_T0039391.1 MGP_C3HHeJ_G0021147.1 mouse_genomes_project 14 51695317 51705414 - MGP_C3HHeJ_P0039391 Gjb6 protein_coding protein_coding MGP_C3HHeJ_T0039392.1 MGP_C3HHeJ_G0021147.1 mouse_genomes_project 14 51701872 51703094 - Gjb6 protein_coding processed_transcript MGP_C3HHeJ_T0038884.1 MGP_C3HHeJ_G0020988.1 mouse_genomes_project 14 44488744 44489388 + MGP_C3HHeJ_P0038884 protein_coding protein_coding MGP_C3HHeJ_T0009915.1 MGP_C3HHeJ_G0008048.1 mouse_genomes_project 14 62307076 62307171 - Gm23178 miRNA miRNA MGP_C3HHeJ_T0002481.1 MGP_C3HHeJ_G0002393.1 mouse_genomes_project 14 48582681 48582744 + MGP_C3HHeJ_P0002481 Traj45 TR_J_gene TR_J_gene MGP_C3HHeJ_T0098936.1 MGP_C3HHeJ_G0037130.1 mouse_genomes_project 14 51388668 51388727 - Gm22218 snRNA snRNA MGP_C3HHeJ_T0039716.1 MGP_C3HHeJ_G0021271.1 mouse_genomes_project 14 64974359 65013908 + MGP_C3HHeJ_P0039716 Bin3 protein_coding protein_coding MGP_C3HHeJ_T0038596.1 MGP_C3HHeJ_G0020885.1 mouse_genomes_project 14 26091733 26123964 + MGP_C3HHeJ_P0038596 1810011H11Rik protein_coding protein_coding MGP_C3HHeJ_T0039508.1 MGP_C3HHeJ_G0021186.1 mouse_genomes_project 14 57047273 57068572 - MGP_C3HHeJ_P0039508 Dleu7 protein_coding protein_coding MGP_C3HHeJ_T0002502.1 MGP_C3HHeJ_G0002414.1 mouse_genomes_project 14 48605986 48606046 + MGP_C3HHeJ_P0002502 TR_J_gene TR_J_gene MGP_C3HHeJ_T0012869.1 MGP_C3HHeJ_G0010973.1 mouse_genomes_project 14 39816282 39817637 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100209.1 MGP_C3HHeJ_G0038403.1 mouse_genomes_project 14 82775535 82775678 + Gm23278 snoRNA snoRNA MGP_C3HHeJ_T0006627.1 MGP_C3HHeJ_G0005472.1 mouse_genomes_project 14 57247946 57258509 - lincRNA lincRNA MGP_C3HHeJ_T0006628.1 MGP_C3HHeJ_G0005472.1 mouse_genomes_project 14 57249367 57277076 - lincRNA lincRNA MGP_C3HHeJ_T0040016.1 MGP_C3HHeJ_G0021374.1 mouse_genomes_project 14 99646894 99702056 + MGP_C3HHeJ_P0040016 Slain1 protein_coding protein_coding MGP_C3HHeJ_T0040017.1 MGP_C3HHeJ_G0021374.1 mouse_genomes_project 14 99647312 99701459 + MGP_C3HHeJ_P0040017 Slain1 protein_coding protein_coding MGP_C3HHeJ_T0040018.1 MGP_C3HHeJ_G0021374.1 mouse_genomes_project 14 99652437 99684317 + MGP_C3HHeJ_P0040018 Slain1 protein_coding protein_coding MGP_C3HHeJ_T0040019.1 MGP_C3HHeJ_G0021374.1 mouse_genomes_project 14 99661154 99701951 + MGP_C3HHeJ_P0040019 Slain1 protein_coding protein_coding MGP_C3HHeJ_T0039294.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106364 50116649 - MGP_C3HHeJ_P0039294 Ipo4 protein_coding protein_coding MGP_C3HHeJ_T0039295.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106598 50116596 - MGP_C3HHeJ_P0039295 Ipo4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039296.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106680 50107397 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0039297.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106683 50108528 - Ipo4 protein_coding processed_transcript MGP_C3HHeJ_T0039298.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106686 50107382 - Ipo4 protein_coding processed_transcript MGP_C3HHeJ_T0039299.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106688 50108355 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0039300.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106704 50116922 - MGP_C3HHeJ_P0039300 Ipo4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039301.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50106860 50118860 - Ipo4 protein_coding processed_transcript MGP_C3HHeJ_T0039302.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50108262 50108889 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0039303.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50109747 50111625 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0039304.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50113892 50114623 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0039305.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50114721 50116175 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0039306.1 MGP_C3HHeJ_G0021100.1 mouse_genomes_project 14 50115012 50116534 - Ipo4 protein_coding retained_intron MGP_C3HHeJ_T0011280.1 MGP_C3HHeJ_G0009413.1 mouse_genomes_project 14 56383662 56383776 + Gm27845 misc_RNA misc_RNA MGP_C3HHeJ_T0037981.1 MGP_C3HHeJ_G0020722.1 mouse_genomes_project 14 395809 407958 + MGP_C3HHeJ_P0037981 protein_coding protein_coding MGP_C3HHeJ_T0037982.1 MGP_C3HHeJ_G0020722.1 mouse_genomes_project 14 406175 406652 + MGP_C3HHeJ_P0037982 protein_coding protein_coding MGP_C3HHeJ_T0000897.1 MGP_C3HHeJ_G0000837.1 mouse_genomes_project 14 95631215 95680974 - TEC TEC MGP_C3HHeJ_T0038882.1 MGP_C3HHeJ_G0020986.1 mouse_genomes_project 14 44458816 44459746 + MGP_C3HHeJ_P0038882 protein_coding protein_coding MGP_C3HHeJ_T0039359.1 MGP_C3HHeJ_G0021125.1 mouse_genomes_project 14 50582629 50585991 - MGP_C3HHeJ_P0039359 Cma2 protein_coding protein_coding MGP_C3HHeJ_T0039702.1 MGP_C3HHeJ_G0021264.1 mouse_genomes_project 14 64469812 64557134 + MGP_C3HHeJ_P0039702 Loxl2 protein_coding protein_coding MGP_C3HHeJ_T0039703.1 MGP_C3HHeJ_G0021264.1 mouse_genomes_project 14 64470222 64554975 + MGP_C3HHeJ_P0039703 Loxl2 protein_coding protein_coding MGP_C3HHeJ_T0039062.1 MGP_C3HHeJ_G0021041.1 mouse_genomes_project 14 46662485 46666704 - MGP_C3HHeJ_P0039062 protein_coding protein_coding MGP_C3HHeJ_T0003488.1 MGP_C3HHeJ_G0003171.1 mouse_genomes_project 14 51345195 51348833 + 2410022M11Rik antisense antisense MGP_C3HHeJ_T0002455.1 MGP_C3HHeJ_G0002372.1 mouse_genomes_project 14 48526396 48526407 + Trdd1 TR_D_gene processed_transcript MGP_C3HHeJ_T0002456.1 MGP_C3HHeJ_G0002372.1 mouse_genomes_project 14 48526396 48526405 + MGP_C3HHeJ_P0002456 Trdd1 TR_D_gene TR_D_gene MGP_C3HHeJ_T0100226.1 MGP_C3HHeJ_G0038420.1 mouse_genomes_project 14 102886004 102886131 + Gm23437 snoRNA snoRNA MGP_C3HHeJ_T0006602.1 MGP_C3HHeJ_G0005453.1 mouse_genomes_project 14 40218231 40236314 + Gm15221 lincRNA lincRNA MGP_C3HHeJ_T0038962.1 MGP_C3HHeJ_G0021024.1 mouse_genomes_project 14 46155239 46163466 - MGP_C3HHeJ_P0038962 Ndrg2 protein_coding protein_coding MGP_C3HHeJ_T0038963.1 MGP_C3HHeJ_G0021024.1 mouse_genomes_project 14 46155244 46164038 - MGP_C3HHeJ_P0038963 Ndrg2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039909.1 MGP_C3HHeJ_G0021337.1 mouse_genomes_project 14 74496618 74507094 - Naa16 protein_coding retained_intron MGP_C3HHeJ_T0039910.1 MGP_C3HHeJ_G0021337.1 mouse_genomes_project 14 74496921 74555674 - MGP_C3HHeJ_P0039910 Naa16 protein_coding protein_coding MGP_C3HHeJ_T0039911.1 MGP_C3HHeJ_G0021337.1 mouse_genomes_project 14 74504873 74551999 - MGP_C3HHeJ_P0039911 Naa16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039912.1 MGP_C3HHeJ_G0021337.1 mouse_genomes_project 14 74532633 74555588 - MGP_C3HHeJ_P0039912 Naa16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039913.1 MGP_C3HHeJ_G0021337.1 mouse_genomes_project 14 74549497 74555586 - Naa16 protein_coding retained_intron MGP_C3HHeJ_T0012870.1 MGP_C3HHeJ_G0010974.1 mouse_genomes_project 14 43675736 43676914 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039360.1 MGP_C3HHeJ_G0021126.1 mouse_genomes_project 14 50601395 50604446 - MGP_C3HHeJ_P0039360 Mcpt8 protein_coding protein_coding MGP_C3HHeJ_T0038068.1 MGP_C3HHeJ_G0020752.1 mouse_genomes_project 14 9136004 9283340 - MGP_C3HHeJ_P0038068 Rarb protein_coding protein_coding MGP_C3HHeJ_T0038062.1 MGP_C3HHeJ_G0020751.1 mouse_genomes_project 14 9068705 9135950 + MGP_C3HHeJ_P0038062 Top2b protein_coding protein_coding MGP_C3HHeJ_T0038063.1 MGP_C3HHeJ_G0020751.1 mouse_genomes_project 14 9094028 9098006 + Top2b protein_coding retained_intron MGP_C3HHeJ_T0038064.1 MGP_C3HHeJ_G0020751.1 mouse_genomes_project 14 9115116 9122198 + MGP_C3HHeJ_P0038064 Top2b protein_coding protein_coding MGP_C3HHeJ_T0038065.1 MGP_C3HHeJ_G0020751.1 mouse_genomes_project 14 9117227 9121869 + MGP_C3HHeJ_P0038065 Top2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038066.1 MGP_C3HHeJ_G0020751.1 mouse_genomes_project 14 9118863 9130606 + MGP_C3HHeJ_P0038066 Top2b protein_coding protein_coding MGP_C3HHeJ_T0038067.1 MGP_C3HHeJ_G0020751.1 mouse_genomes_project 14 9128454 9133669 + Top2b protein_coding retained_intron MGP_C3HHeJ_T0100230.1 MGP_C3HHeJ_G0038424.1 mouse_genomes_project 14 115461291 115461422 + Gm22379 snoRNA snoRNA MGP_C3HHeJ_T0009900.1 MGP_C3HHeJ_G0008033.1 mouse_genomes_project 14 49045616 49045725 - Mir686 miRNA miRNA MGP_C3HHeJ_T0000884.1 MGP_C3HHeJ_G0000824.1 mouse_genomes_project 14 56423587 56426498 - TEC TEC MGP_C3HHeJ_T0039489.1 MGP_C3HHeJ_G0021176.1 mouse_genomes_project 14 55503463 55516161 + MGP_C3HHeJ_P0039489 C1qtnf9 protein_coding protein_coding MGP_C3HHeJ_T0039233.1 MGP_C3HHeJ_G0021091.1 mouse_genomes_project 14 50039042 50039507 - MGP_C3HHeJ_P0039233 A730061H03Rik protein_coding protein_coding MGP_C3HHeJ_T0006583.1 MGP_C3HHeJ_G0005440.1 mouse_genomes_project 14 17924242 17929947 + Gm10398 lincRNA lincRNA MGP_C3HHeJ_T0006623.1 MGP_C3HHeJ_G0005468.1 mouse_genomes_project 14 55210704 55321809 + Gm29266 lincRNA lincRNA MGP_C3HHeJ_T0039917.1 MGP_C3HHeJ_G0021341.1 mouse_genomes_project 14 74628951 74651286 - MGP_C3HHeJ_P0039917 Wbp4 protein_coding protein_coding MGP_C3HHeJ_T0039180.1 MGP_C3HHeJ_G0021074.1 mouse_genomes_project 14 49371856 49383169 - MGP_C3HHeJ_P0039180 Efs protein_coding protein_coding MGP_C3HHeJ_T0038921.1 MGP_C3HHeJ_G0021005.1 mouse_genomes_project 14 45079302 45082310 + MGP_C3HHeJ_P0038921 Rnase10 protein_coding protein_coding MGP_C3HHeJ_T0038922.1 MGP_C3HHeJ_G0021005.1 mouse_genomes_project 14 45079480 45082310 + MGP_C3HHeJ_P0038922 Rnase10 protein_coding protein_coding MGP_C3HHeJ_T0002501.1 MGP_C3HHeJ_G0002413.1 mouse_genomes_project 14 48605543 48605606 + MGP_C3HHeJ_P0002501 Traj24 TR_J_gene TR_J_gene MGP_C3HHeJ_T0003447.1 MGP_C3HHeJ_G0003141.1 mouse_genomes_project 14 13310822 13311394 + 7330404K18Rik antisense antisense MGP_C3HHeJ_T0039265.1 MGP_C3HHeJ_G0021095.1 mouse_genomes_project 14 50060616 50064017 - MGP_C3HHeJ_P0039265 Emc9 protein_coding protein_coding MGP_C3HHeJ_T0039266.1 MGP_C3HHeJ_G0021095.1 mouse_genomes_project 14 50060621 50061525 - Emc9 protein_coding retained_intron MGP_C3HHeJ_T0039267.1 MGP_C3HHeJ_G0021095.1 mouse_genomes_project 14 50060622 50064373 - MGP_C3HHeJ_P0039267 Emc9 protein_coding protein_coding MGP_C3HHeJ_T0039268.1 MGP_C3HHeJ_G0021095.1 mouse_genomes_project 14 50062444 50064282 - Emc9 protein_coding retained_intron MGP_C3HHeJ_T0038894.1 MGP_C3HHeJ_G0020997.1 mouse_genomes_project 14 44876355 44893074 + MGP_C3HHeJ_P0038894 Parp2 protein_coding protein_coding MGP_C3HHeJ_T0012904.1 MGP_C3HHeJ_G0011008.1 mouse_genomes_project 14 95724265 95724562 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012892.1 MGP_C3HHeJ_G0010996.1 mouse_genomes_project 14 69743720 69757424 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006654.1 MGP_C3HHeJ_G0005492.1 mouse_genomes_project 14 117131274 117136621 - Gm26679 lincRNA lincRNA MGP_C3HHeJ_T0006629.1 MGP_C3HHeJ_G0005473.1 mouse_genomes_project 14 57562767 57636419 + 4931440J10Rik lincRNA lincRNA MGP_C3HHeJ_T0039905.1 MGP_C3HHeJ_G0021335.1 mouse_genomes_project 14 74363949 74400164 - MGP_C3HHeJ_P0039905 Zfp957 protein_coding protein_coding MGP_C3HHeJ_T0039906.1 MGP_C3HHeJ_G0021335.1 mouse_genomes_project 14 74363951 74376727 - MGP_C3HHeJ_P0039906 Zfp957 protein_coding protein_coding MGP_C3HHeJ_T0039907.1 MGP_C3HHeJ_G0021335.1 mouse_genomes_project 14 74375780 74400237 - Zfp957 protein_coding retained_intron MGP_C3HHeJ_T0039903.1 MGP_C3HHeJ_G0021333.1 mouse_genomes_project 14 73706060 73880230 - MGP_C3HHeJ_P0039903 Dgkh protein_coding protein_coding MGP_C3HHeJ_T0006651.1 MGP_C3HHeJ_G0005489.1 mouse_genomes_project 14 115018504 115050652 + 1700044C05Rik lincRNA lincRNA MGP_C3HHeJ_T0100210.1 MGP_C3HHeJ_G0038404.1 mouse_genomes_project 14 85249687 85249819 + Gm25415 snoRNA snoRNA MGP_C3HHeJ_T0011279.1 MGP_C3HHeJ_G0009412.1 mouse_genomes_project 14 51063135 51063242 + Gm22431 misc_RNA misc_RNA MGP_C3HHeJ_T0038798.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41526509 41620700 + MGP_C3HHeJ_P0038798 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038799.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41527381 41620700 + MGP_C3HHeJ_P0038799 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038800.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41527386 41543633 + MGP_C3HHeJ_P0038800 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038801.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41527464 41620707 + MGP_C3HHeJ_P0038801 Ktn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038802.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543073 41620706 + MGP_C3HHeJ_P0038802 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038803.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620432 + MGP_C3HHeJ_P0038803 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038804.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038804 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038805.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038805 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038806.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038806 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038807.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620427 + MGP_C3HHeJ_P0038807 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038808.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038808 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038809.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620430 + MGP_C3HHeJ_P0038809 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038810.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620431 + MGP_C3HHeJ_P0038810 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038811.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038811 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038812.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038812 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038813.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038813 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038814.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038814 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038815.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620436 + MGP_C3HHeJ_P0038815 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038816.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620436 + MGP_C3HHeJ_P0038816 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038817.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620422 + MGP_C3HHeJ_P0038817 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038818.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41543104 41620434 + MGP_C3HHeJ_P0038818 Ktn1 protein_coding protein_coding MGP_C3HHeJ_T0038819.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41583488 41587238 + Ktn1 protein_coding retained_intron MGP_C3HHeJ_T0038820.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41588454 41599591 + Ktn1 protein_coding retained_intron MGP_C3HHeJ_T0038821.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41598791 41609049 + Ktn1 protein_coding retained_intron MGP_C3HHeJ_T0038822.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41608932 41610408 + Ktn1 protein_coding retained_intron MGP_C3HHeJ_T0038823.1 MGP_C3HHeJ_G0020959.1 mouse_genomes_project 14 41613823 41620704 + Ktn1 protein_coding retained_intron MGP_C3HHeJ_T0038011.1 MGP_C3HHeJ_G0020731.1 mouse_genomes_project 14 3616015 3616455 + MGP_C3HHeJ_P0038011 Rpl21-ps4 protein_coding protein_coding MGP_C3HHeJ_T0038559.1 MGP_C3HHeJ_G0020873.1 mouse_genomes_project 14 25428235 25444570 + MGP_C3HHeJ_P0038559 Msmb protein_coding protein_coding MGP_C3HHeJ_T0038560.1 MGP_C3HHeJ_G0020873.1 mouse_genomes_project 14 25433796 25444570 + MGP_C3HHeJ_P0038560 Msmb protein_coding protein_coding MGP_C3HHeJ_T0038407.1 MGP_C3HHeJ_G0020844.1 mouse_genomes_project 14 24103554 24105906 + MGP_C3HHeJ_P0038407 Mustn1 protein_coding protein_coding MGP_C3HHeJ_T0039400.1 MGP_C3HHeJ_G0021151.1 mouse_genomes_project 14 52144102 52170483 - MGP_C3HHeJ_P0039400 Eef1akmt1 protein_coding protein_coding MGP_C3HHeJ_T0006571.1 MGP_C3HHeJ_G0005433.1 mouse_genomes_project 14 5647054 5811362 - lincRNA lincRNA MGP_C3HHeJ_T0006572.1 MGP_C3HHeJ_G0005433.1 mouse_genomes_project 14 5648240 5671564 - lincRNA lincRNA MGP_C3HHeJ_T0006573.1 MGP_C3HHeJ_G0005433.1 mouse_genomes_project 14 5789872 5811354 - lincRNA lincRNA MGP_C3HHeJ_T0009917.1 MGP_C3HHeJ_G0008050.1 mouse_genomes_project 14 64553528 64553601 + Mir6950 miRNA miRNA MGP_C3HHeJ_T0038118.1 MGP_C3HHeJ_G0020769.1 mouse_genomes_project 14 13295533 13300900 - MGP_C3HHeJ_P0038118 Dnajc9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017199.1 MGP_C3HHeJ_G0015043.1 mouse_genomes_project 14 101589161 101595973 + 4930449E01Rik processed_transcript lincRNA MGP_C3HHeJ_T0017200.1 MGP_C3HHeJ_G0015043.1 mouse_genomes_project 14 101591287 101591647 + 4930449E01Rik processed_transcript TEC MGP_C3HHeJ_T0017201.1 MGP_C3HHeJ_G0015043.1 mouse_genomes_project 14 101593927 101595980 + 4930449E01Rik processed_transcript lincRNA MGP_C3HHeJ_T0002457.1 MGP_C3HHeJ_G0002373.1 mouse_genomes_project 14 48535267 48535283 + MGP_C3HHeJ_P0002457 Trdd2 TR_D_gene TR_D_gene MGP_C3HHeJ_T0038941.1 MGP_C3HHeJ_G0021021.1 mouse_genomes_project 14 46092517 46093385 + MGP_C3HHeJ_P0038941 Ear6 protein_coding protein_coding MGP_C3HHeJ_T0038942.1 MGP_C3HHeJ_G0021021.1 mouse_genomes_project 14 46092586 46093385 + MGP_C3HHeJ_P0038942 Ear6 protein_coding protein_coding MGP_C3HHeJ_T0000886.1 MGP_C3HHeJ_G0000826.1 mouse_genomes_project 14 56440726 56442870 + TEC TEC MGP_C3HHeJ_T0101746.1 MGP_C3HHeJ_G0039711.1 mouse_genomes_project 14 46090679 46093281 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039590.1 MGP_C3HHeJ_G0021222.1 mouse_genomes_project 14 60296592 60324802 - MGP_C3HHeJ_P0039590 Pnoc protein_coding protein_coding MGP_C3HHeJ_T0038389.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23873380 23911721 + MGP_C3HHeJ_P0038389 Rft1 protein_coding protein_coding MGP_C3HHeJ_T0038390.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23873395 23880384 + Rft1 protein_coding processed_transcript MGP_C3HHeJ_T0038391.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23873403 23882871 + Rft1 protein_coding processed_transcript MGP_C3HHeJ_T0038392.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23873407 23884054 + Rft1 protein_coding retained_intron MGP_C3HHeJ_T0038393.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23873427 23911721 + MGP_C3HHeJ_P0038393 Rft1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038394.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23873427 23911721 + MGP_C3HHeJ_P0038394 Rft1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038395.1 MGP_C3HHeJ_G0020841.1 mouse_genomes_project 14 23901775 23910358 + Rft1 protein_coding processed_transcript MGP_C3HHeJ_T0038413.1 MGP_C3HHeJ_G0020846.1 mouse_genomes_project 14 24132554 24147457 - MGP_C3HHeJ_P0038413 Itih3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038414.1 MGP_C3HHeJ_G0020846.1 mouse_genomes_project 14 24132557 24147668 - MGP_C3HHeJ_P0038414 Itih3 protein_coding protein_coding MGP_C3HHeJ_T0038415.1 MGP_C3HHeJ_G0020846.1 mouse_genomes_project 14 24132560 24147495 - Itih3 protein_coding retained_intron MGP_C3HHeJ_T0038416.1 MGP_C3HHeJ_G0020846.1 mouse_genomes_project 14 24132667 24147457 - MGP_C3HHeJ_P0038416 Itih3 protein_coding protein_coding MGP_C3HHeJ_T0038417.1 MGP_C3HHeJ_G0020846.1 mouse_genomes_project 14 24133822 24139318 - MGP_C3HHeJ_P0038417 Itih3 protein_coding protein_coding MGP_C3HHeJ_T0038418.1 MGP_C3HHeJ_G0020846.1 mouse_genomes_project 14 24135892 24138060 - Itih3 protein_coding retained_intron MGP_C3HHeJ_T0006616.1 MGP_C3HHeJ_G0005462.1 mouse_genomes_project 14 46452026 46468667 + Gm26590 lincRNA lincRNA MGP_C3HHeJ_T0101744.1 MGP_C3HHeJ_G0039709.1 mouse_genomes_project 14 45314953 45419655 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003485.1 MGP_C3HHeJ_G0003170.1 mouse_genomes_project 14 51135474 51149354 - Gm16573 antisense antisense MGP_C3HHeJ_T0003486.1 MGP_C3HHeJ_G0003170.1 mouse_genomes_project 14 51139001 51149370 - Gm16573 antisense antisense MGP_C3HHeJ_T0003487.1 MGP_C3HHeJ_G0003170.1 mouse_genomes_project 14 51145727 51149370 - Gm16573 antisense antisense MGP_C3HHeJ_T0002603.1 MGP_C3HHeJ_G0002497.1 mouse_genomes_project 14 48369224 48369749 + MGP_C3HHeJ_P0002603 Trav23 TR_V_gene TR_V_gene MGP_C3HHeJ_T0012905.1 MGP_C3HHeJ_G0011009.1 mouse_genomes_project 14 96124619 96124924 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101731.1 MGP_C3HHeJ_G0039696.1 mouse_genomes_project 14 11914300 11918609 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039563.1 MGP_C3HHeJ_G0021211.1 mouse_genomes_project 14 58943388 58953363 - MGP_C3HHeJ_P0039563 Prss55 protein_coding protein_coding MGP_C3HHeJ_T0039564.1 MGP_C3HHeJ_G0021211.1 mouse_genomes_project 14 58943395 58953320 - MGP_C3HHeJ_P0039564 Prss55 protein_coding protein_coding MGP_C3HHeJ_T0039565.1 MGP_C3HHeJ_G0021211.1 mouse_genomes_project 14 58947282 58958047 - Prss55 protein_coding processed_transcript MGP_C3HHeJ_T0038649.1 MGP_C3HHeJ_G0020907.1 mouse_genomes_project 14 27735124 27738701 - MGP_C3HHeJ_P0038649 Fam25c protein_coding protein_coding MGP_C3HHeJ_T0009895.1 MGP_C3HHeJ_G0008028.1 mouse_genomes_project 14 28319670 28319768 + Mir346 miRNA miRNA MGP_C3HHeJ_T0039217.1 MGP_C3HHeJ_G0021085.1 mouse_genomes_project 14 49692781 49712136 + MGP_C3HHeJ_P0039217 Dhrs2 protein_coding protein_coding MGP_C3HHeJ_T0039218.1 MGP_C3HHeJ_G0021085.1 mouse_genomes_project 14 49705442 49711949 + MGP_C3HHeJ_P0039218 Dhrs2 protein_coding protein_coding MGP_C3HHeJ_T0039895.1 MGP_C3HHeJ_G0021329.1 mouse_genomes_project 14 73016726 73118313 + MGP_C3HHeJ_P0039895 Epsti1 protein_coding protein_coding MGP_C3HHeJ_T0039896.1 MGP_C3HHeJ_G0021329.1 mouse_genomes_project 14 73016894 73077939 + MGP_C3HHeJ_P0039896 Epsti1 protein_coding protein_coding MGP_C3HHeJ_T0039619.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61121620 61184208 - MGP_C3HHeJ_P0039619 Ptk2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0039620.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61121622 61138622 - MGP_C3HHeJ_P0039620 Ptk2b protein_coding protein_coding MGP_C3HHeJ_T0039621.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61121622 61259152 - MGP_C3HHeJ_P0039621 Ptk2b protein_coding protein_coding MGP_C3HHeJ_T0039622.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61121627 61129039 - Ptk2b protein_coding retained_intron MGP_C3HHeJ_T0039623.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61122204 61259082 - MGP_C3HHeJ_P0039623 Ptk2b protein_coding protein_coding MGP_C3HHeJ_T0039624.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61124641 61132263 - Ptk2b protein_coding retained_intron MGP_C3HHeJ_T0039625.1 MGP_C3HHeJ_G0021235.1 mouse_genomes_project 14 61141065 61259092 - Ptk2b protein_coding retained_intron MGP_C3HHeJ_T0098034.1 MGP_C3HHeJ_G0036246.1 mouse_genomes_project 14 4868021 4868131 - n-R5s45 rRNA rRNA MGP_C3HHeJ_T0012877.1 MGP_C3HHeJ_G0010981.1 mouse_genomes_project 14 46887695 46887920 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038001.1 MGP_C3HHeJ_G0020729.1 mouse_genomes_project 14 761491 998472 - MGP_C3HHeJ_P0038001 4930452B06Rik protein_coding protein_coding MGP_C3HHeJ_T0098950.1 MGP_C3HHeJ_G0037144.1 mouse_genomes_project 14 93776900 93777063 - Gm25831 snRNA snRNA MGP_C3HHeJ_T0098914.1 MGP_C3HHeJ_G0037108.1 mouse_genomes_project 14 10760203 10760266 + Gm27851 snRNA snRNA MGP_C3HHeJ_T0039584.1 MGP_C3HHeJ_G0021218.1 mouse_genomes_project 14 59944517 59990407 - MGP_C3HHeJ_P0039584 Extl3 protein_coding protein_coding MGP_C3HHeJ_T0098955.1 MGP_C3HHeJ_G0037149.1 mouse_genomes_project 14 96663872 96663973 - Gm23538 snRNA snRNA MGP_C3HHeJ_T0012898.1 MGP_C3HHeJ_G0011002.1 mouse_genomes_project 14 83816340 83817324 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039626.1 MGP_C3HHeJ_G0021236.1 mouse_genomes_project 14 61275962 61290354 + MGP_C3HHeJ_P0039626 Trim35 protein_coding protein_coding MGP_C3HHeJ_T0039627.1 MGP_C3HHeJ_G0021236.1 mouse_genomes_project 14 61276021 61287227 + MGP_C3HHeJ_P0039627 Trim35 protein_coding protein_coding MGP_C3HHeJ_T0038103.1 MGP_C3HHeJ_G0020762.1 mouse_genomes_project 14 12743307 12867067 - MGP_C3HHeJ_P0038103 Gng2 protein_coding protein_coding MGP_C3HHeJ_T0038104.1 MGP_C3HHeJ_G0020762.1 mouse_genomes_project 14 12746403 12866990 - MGP_C3HHeJ_P0038104 Gng2 protein_coding protein_coding MGP_C3HHeJ_T0038105.1 MGP_C3HHeJ_G0020762.1 mouse_genomes_project 14 12746403 12867445 - MGP_C3HHeJ_P0038105 Gng2 protein_coding protein_coding MGP_C3HHeJ_T0038106.1 MGP_C3HHeJ_G0020762.1 mouse_genomes_project 14 12746444 12866877 - MGP_C3HHeJ_P0038106 Gng2 protein_coding protein_coding MGP_C3HHeJ_T0038107.1 MGP_C3HHeJ_G0020762.1 mouse_genomes_project 14 12746487 12867002 - MGP_C3HHeJ_P0038107 Gng2 protein_coding protein_coding MGP_C3HHeJ_T0038108.1 MGP_C3HHeJ_G0020762.1 mouse_genomes_project 14 12746541 12866511 - MGP_C3HHeJ_P0038108 Gng2 protein_coding protein_coding MGP_C3HHeJ_T0040108.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119407488 119460155 + Pcca protein_coding retained_intron MGP_C3HHeJ_T0040109.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119407495 119493715 + MGP_C3HHeJ_P0040109 Pcca protein_coding protein_coding MGP_C3HHeJ_T0040110.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119407503 119779013 + MGP_C3HHeJ_P0040110 Pcca protein_coding protein_coding MGP_C3HHeJ_T0040111.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119407509 119528766 + MGP_C3HHeJ_P0040111 Pcca protein_coding protein_coding MGP_C3HHeJ_T0040112.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119459861 119778897 + MGP_C3HHeJ_P0040112 Pcca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040113.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119479627 119543500 + Pcca protein_coding processed_transcript MGP_C3HHeJ_T0040114.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119598581 119622743 + MGP_C3HHeJ_P0040114 Pcca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040115.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119598607 119778894 + MGP_C3HHeJ_P0040115 Pcca protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040116.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119598671 119702295 + Pcca protein_coding processed_transcript MGP_C3HHeJ_T0040117.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119622647 119702641 + Pcca protein_coding retained_intron MGP_C3HHeJ_T0040118.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119675840 119778889 + MGP_C3HHeJ_P0040118 Pcca protein_coding protein_coding MGP_C3HHeJ_T0040120.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119765003 119780169 + Pcca protein_coding processed_transcript MGP_C3HHeJ_T0040121.1 MGP_C3HHeJ_G0021417.1 mouse_genomes_project 14 119775971 119778897 + Pcca protein_coding retained_intron MGP_C3HHeJ_T0039958.1 MGP_C3HHeJ_G0021358.1 mouse_genomes_project 14 94911568 94936042 - MGP_C3HHeJ_P0039958 Dis3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039959.1 MGP_C3HHeJ_G0021358.1 mouse_genomes_project 14 94912996 94936139 - MGP_C3HHeJ_P0039959 Dis3 protein_coding protein_coding MGP_C3HHeJ_T0101742.1 MGP_C3HHeJ_G0039707.1 mouse_genomes_project 14 45314844 45419655 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011278.1 MGP_C3HHeJ_G0009411.1 mouse_genomes_project 14 48529976 48530316 + Gm23704 misc_RNA misc_RNA MGP_C3HHeJ_T0003517.1 MGP_C3HHeJ_G0003191.1 mouse_genomes_project 14 119088727 119094060 - 1700108J01Rik antisense antisense MGP_C3HHeJ_T0038158.1 MGP_C3HHeJ_G0020784.1 mouse_genomes_project 14 13764708 13771435 + MGP_C3HHeJ_P0038158 Plau protein_coding protein_coding MGP_C3HHeJ_T0038433.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24254954 24363307 + MGP_C3HHeJ_P0038433 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038434.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24254954 24360620 + MGP_C3HHeJ_P0038434 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038435.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24254965 24264045 + MGP_C3HHeJ_P0038435 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038436.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24254973 24322740 + MGP_C3HHeJ_P0038436 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038437.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24254986 24360686 + MGP_C3HHeJ_P0038437 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038438.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24254993 24264013 + MGP_C3HHeJ_P0038438 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038439.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24255015 24268561 + Pbrm1 protein_coding processed_transcript MGP_C3HHeJ_T0038440.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24255024 24360838 + MGP_C3HHeJ_P0038440 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038441.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262021 24355664 + MGP_C3HHeJ_P0038441 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038442.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262021 24360685 + MGP_C3HHeJ_P0038442 Pbrm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038443.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262024 24361739 + MGP_C3HHeJ_P0038443 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038444.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262024 24360666 + MGP_C3HHeJ_P0038444 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038445.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262024 24360686 + MGP_C3HHeJ_P0038445 Pbrm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038446.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262024 24360667 + MGP_C3HHeJ_P0038446 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038447.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24262025 24361754 + MGP_C3HHeJ_P0038447 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038448.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24263992 24325186 + MGP_C3HHeJ_P0038448 Pbrm1 protein_coding protein_coding MGP_C3HHeJ_T0038449.1 MGP_C3HHeJ_G0020852.1 mouse_genomes_project 14 24324345 24328182 + Pbrm1 protein_coding retained_intron MGP_C3HHeJ_T0006586.1 MGP_C3HHeJ_G0005443.1 mouse_genomes_project 14 19436061 19471507 + 4933413J09Rik lincRNA lincRNA MGP_C3HHeJ_T0006587.1 MGP_C3HHeJ_G0005443.1 mouse_genomes_project 14 19437034 19488978 + 4933413J09Rik lincRNA lincRNA MGP_C3HHeJ_T0006588.1 MGP_C3HHeJ_G0005443.1 mouse_genomes_project 14 19437067 19456403 + 4933413J09Rik lincRNA lincRNA MGP_C3HHeJ_T0006589.1 MGP_C3HHeJ_G0005443.1 mouse_genomes_project 14 19442118 19457521 + 4933413J09Rik lincRNA lincRNA MGP_C3HHeJ_T0006590.1 MGP_C3HHeJ_G0005443.1 mouse_genomes_project 14 19443875 19485164 + 4933413J09Rik lincRNA lincRNA MGP_C3HHeJ_T0006591.1 MGP_C3HHeJ_G0005443.1 mouse_genomes_project 14 19443875 19457419 + 4933413J09Rik lincRNA lincRNA MGP_C3HHeJ_T0002493.1 MGP_C3HHeJ_G0002405.1 mouse_genomes_project 14 48595866 48595932 + MGP_C3HHeJ_P0002493 Traj32 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039979.1 MGP_C3HHeJ_G0021365.1 mouse_genomes_project 14 97595644 97639227 + MGP_C3HHeJ_P0039979 protein_coding protein_coding MGP_C3HHeJ_T0003513.1 MGP_C3HHeJ_G0003189.1 mouse_genomes_project 14 99690131 99696591 - Slain1os antisense antisense MGP_C3HHeJ_T0040079.1 MGP_C3HHeJ_G0021399.1 mouse_genomes_project 14 115849451 116601164 + MGP_C3HHeJ_P0040079 Hs6st3 protein_coding protein_coding MGP_C3HHeJ_T0038740.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39367923 39434216 - MGP_C3HHeJ_P0038740 Ddhd1 protein_coding protein_coding MGP_C3HHeJ_T0038741.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39368234 39397037 - Ddhd1 protein_coding retained_intron MGP_C3HHeJ_T0038742.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39369404 39434171 - MGP_C3HHeJ_P0038742 Ddhd1 protein_coding protein_coding MGP_C3HHeJ_T0038743.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39369404 39434171 - MGP_C3HHeJ_P0038743 Ddhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038744.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39369475 39398955 - Ddhd1 protein_coding retained_intron MGP_C3HHeJ_T0038745.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39369692 39377509 - MGP_C3HHeJ_P0038745 Ddhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038746.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39370085 39396494 - MGP_C3HHeJ_P0038746 Ddhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038747.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39370175 39434215 - MGP_C3HHeJ_P0038747 Ddhd1 protein_coding protein_coding MGP_C3HHeJ_T0038748.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39379792 39384147 - Ddhd1 protein_coding retained_intron MGP_C3HHeJ_T0038749.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39396419 39433474 - Ddhd1 protein_coding processed_transcript MGP_C3HHeJ_T0038750.1 MGP_C3HHeJ_G0020944.1 mouse_genomes_project 14 39404114 39433491 - Ddhd1 protein_coding retained_intron MGP_C3HHeJ_T0100212.1 MGP_C3HHeJ_G0038406.1 mouse_genomes_project 14 86724832 86724946 - Gm23225 snoRNA snoRNA MGP_C3HHeJ_T0039427.1 MGP_C3HHeJ_G0021155.1 mouse_genomes_project 14 52424379 52446458 - MGP_C3HHeJ_P0039427 Ska3 protein_coding protein_coding MGP_C3HHeJ_T0017202.1 MGP_C3HHeJ_G0015044.1 mouse_genomes_project 14 111969841 111982714 - 4930505G20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0038378.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23812422 23828390 - MGP_C3HHeJ_P0038378 Prkcd protein_coding protein_coding MGP_C3HHeJ_T0038379.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23812430 23844317 - MGP_C3HHeJ_P0038379 Prkcd protein_coding protein_coding MGP_C3HHeJ_T0038380.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23812432 23828390 - MGP_C3HHeJ_P0038380 Prkcd protein_coding protein_coding MGP_C3HHeJ_T0038381.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23812671 23825910 - MGP_C3HHeJ_P0038381 Prkcd protein_coding protein_coding MGP_C3HHeJ_T0038382.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23812730 23817281 - Prkcd protein_coding retained_intron MGP_C3HHeJ_T0038383.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23815480 23825910 - MGP_C3HHeJ_P0038383 Prkcd protein_coding protein_coding MGP_C3HHeJ_T0038384.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23815480 23825910 - MGP_C3HHeJ_P0038384 Prkcd protein_coding protein_coding MGP_C3HHeJ_T0038385.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23817335 23844281 - Prkcd protein_coding retained_intron MGP_C3HHeJ_T0038386.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23819470 23823952 - Prkcd protein_coding retained_intron MGP_C3HHeJ_T0038387.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23819563 23823761 - Prkcd protein_coding retained_intron MGP_C3HHeJ_T0038388.1 MGP_C3HHeJ_G0020840.1 mouse_genomes_project 14 23822193 23825432 - Prkcd protein_coding retained_intron MGP_C3HHeJ_T0002561.1 MGP_C3HHeJ_G0002466.1 mouse_genomes_project 14 46910062 46910516 + MGP_C3HHeJ_P0002561 Trav6-2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002562.1 MGP_C3HHeJ_G0002466.1 mouse_genomes_project 14 46910062 46910516 + MGP_C3HHeJ_P0002562 Trav6-2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0006642.1 MGP_C3HHeJ_G0005482.1 mouse_genomes_project 14 72578123 72605456 - Gm6994 lincRNA lincRNA MGP_C3HHeJ_T0006643.1 MGP_C3HHeJ_G0005482.1 mouse_genomes_project 14 72578746 72600045 - Gm6994 lincRNA lincRNA MGP_C3HHeJ_T0038638.1 MGP_C3HHeJ_G0020902.1 mouse_genomes_project 14 27510634 27519132 - MGP_C3HHeJ_P0038638 Npy4r protein_coding protein_coding MGP_C3HHeJ_T0039353.1 MGP_C3HHeJ_G0021119.1 mouse_genomes_project 14 50384242 50396196 + MGP_C3HHeJ_P0039353 Khnyn protein_coding protein_coding MGP_C3HHeJ_T0006619.1 MGP_C3HHeJ_G0005465.1 mouse_genomes_project 14 51225633 51228715 - Gm16973 lincRNA lincRNA MGP_C3HHeJ_T0006620.1 MGP_C3HHeJ_G0005465.1 mouse_genomes_project 14 51226700 51230622 - Gm16973 lincRNA lincRNA MGP_C3HHeJ_T0098966.1 MGP_C3HHeJ_G0037160.1 mouse_genomes_project 14 119261369 119261476 - Gm25464 snRNA snRNA MGP_C3HHeJ_T0038910.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45011227 45014846 - MGP_C3HHeJ_P0038910 Tmem55b protein_coding protein_coding MGP_C3HHeJ_T0038911.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45011232 45014871 - MGP_C3HHeJ_P0038911 Tmem55b protein_coding protein_coding MGP_C3HHeJ_T0038912.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45011234 45014866 - Tmem55b protein_coding retained_intron MGP_C3HHeJ_T0038913.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45011883 45013227 - MGP_C3HHeJ_P0038913 Tmem55b protein_coding protein_coding MGP_C3HHeJ_T0038914.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45012843 45014818 - MGP_C3HHeJ_P0038914 Tmem55b protein_coding protein_coding MGP_C3HHeJ_T0038915.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45012939 45014848 - Tmem55b protein_coding retained_intron MGP_C3HHeJ_T0038916.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45013041 45013781 - Tmem55b protein_coding retained_intron MGP_C3HHeJ_T0038917.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45013275 45014853 - Tmem55b protein_coding retained_intron MGP_C3HHeJ_T0038918.1 MGP_C3HHeJ_G0021003.1 mouse_genomes_project 14 45013352 45014815 - Tmem55b protein_coding retained_intron MGP_C3HHeJ_T0038688.1 MGP_C3HHeJ_G0020920.1 mouse_genomes_project 14 30510317 30520776 + MGP_C3HHeJ_P0038688 Lrit1 protein_coding protein_coding MGP_C3HHeJ_T0002474.1 MGP_C3HHeJ_G0002388.1 mouse_genomes_project 14 48577323 48577386 + MGP_C3HHeJ_P0002474 Traj50 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038889.1 MGP_C3HHeJ_G0020993.1 mouse_genomes_project 14 44764233 44765157 + MGP_C3HHeJ_P0038889 protein_coding protein_coding MGP_C3HHeJ_T0006640.1 MGP_C3HHeJ_G0005480.1 mouse_genomes_project 14 70147647 70148290 - Gm15628 lincRNA lincRNA MGP_C3HHeJ_T0098959.1 MGP_C3HHeJ_G0037153.1 mouse_genomes_project 14 102364996 102365127 - Gm23459 snRNA snRNA MGP_C3HHeJ_T0039331.1 MGP_C3HHeJ_G0021108.1 mouse_genomes_project 14 50201660 50207986 - MGP_C3HHeJ_P0039331 Rabggta protein_coding protein_coding MGP_C3HHeJ_T0039332.1 MGP_C3HHeJ_G0021108.1 mouse_genomes_project 14 50201664 50207964 - MGP_C3HHeJ_P0039332 Rabggta protein_coding protein_coding MGP_C3HHeJ_T0039333.1 MGP_C3HHeJ_G0021108.1 mouse_genomes_project 14 50202112 50208045 - MGP_C3HHeJ_P0039333 Rabggta protein_coding protein_coding MGP_C3HHeJ_T0038086.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11261632 11597413 - MGP_C3HHeJ_P0038086 Ube2e2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038087.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11261634 11603256 - MGP_C3HHeJ_P0038087 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038088.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11262099 11597261 - MGP_C3HHeJ_P0038088 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038089.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11262352 11597405 - MGP_C3HHeJ_P0038089 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038090.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11262421 11291391 - Ube2e2 protein_coding processed_transcript MGP_C3HHeJ_T0038091.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11262421 11597357 - MGP_C3HHeJ_P0038091 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038092.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11279798 11364613 - Ube2e2 protein_coding processed_transcript MGP_C3HHeJ_T0038093.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11279798 11602374 - MGP_C3HHeJ_P0038093 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038094.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11291283 11603198 - Ube2e2 protein_coding processed_transcript MGP_C3HHeJ_T0038095.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11322350 11603110 - MGP_C3HHeJ_P0038095 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038096.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11322362 11603763 - MGP_C3HHeJ_P0038096 Ube2e2 protein_coding protein_coding MGP_C3HHeJ_T0038097.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11322420 11603110 - Ube2e2 protein_coding processed_transcript MGP_C3HHeJ_T0038098.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11330386 11603173 - Ube2e2 protein_coding processed_transcript MGP_C3HHeJ_T0038099.1 MGP_C3HHeJ_G0020758.1 mouse_genomes_project 14 11595328 11602239 - Ube2e2 protein_coding retained_intron MGP_C3HHeJ_T0012908.1 MGP_C3HHeJ_G0011012.1 mouse_genomes_project 14 108936812 108937292 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038935.1 MGP_C3HHeJ_G0021015.1 mouse_genomes_project 14 45229604 45231367 - MGP_C3HHeJ_P0038935 Rnase1 protein_coding protein_coding MGP_C3HHeJ_T0038966.1 MGP_C3HHeJ_G0021026.1 mouse_genomes_project 14 46172105 46172719 - MGP_C3HHeJ_P0038966 Rnase13 protein_coding protein_coding MGP_C3HHeJ_T0039454.1 MGP_C3HHeJ_G0021164.1 mouse_genomes_project 14 53911854 54083941 - MGP_C3HHeJ_P0039454 Phf11b protein_coding protein_coding MGP_C3HHeJ_T0012868.1 MGP_C3HHeJ_G0010972.1 mouse_genomes_project 14 39699382 39699761 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009936.1 MGP_C3HHeJ_G0008069.1 mouse_genomes_project 14 111608489 111608576 + Mir19b-1 miRNA miRNA MGP_C3HHeJ_T0012884.1 MGP_C3HHeJ_G0010988.1 mouse_genomes_project 14 52738706 52739064 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098949.1 MGP_C3HHeJ_G0037143.1 mouse_genomes_project 14 92197148 92197264 + Gm24043 snRNA snRNA MGP_C3HHeJ_T0038864.1 MGP_C3HHeJ_G0020971.1 mouse_genomes_project 14 44086172 44087196 - MGP_C3HHeJ_P0038864 protein_coding protein_coding MGP_C3HHeJ_T0038540.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25361655 25366699 - MGP_C3HHeJ_P0038540 Dph3 protein_coding protein_coding MGP_C3HHeJ_T0038541.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25361658 25366699 - MGP_C3HHeJ_P0038541 Dph3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038542.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25361658 25366699 - MGP_C3HHeJ_P0038542 Dph3 protein_coding protein_coding MGP_C3HHeJ_T0038543.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25363847 25366699 - MGP_C3HHeJ_P0038543 Dph3 protein_coding protein_coding MGP_C3HHeJ_T0038544.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25363961 25366782 - Dph3 protein_coding processed_transcript MGP_C3HHeJ_T0038545.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25363965 25366376 - Dph3 protein_coding retained_intron MGP_C3HHeJ_T0038546.1 MGP_C3HHeJ_G0020871.1 mouse_genomes_project 14 25365785 25366699 - MGP_C3HHeJ_P0038546 Dph3 protein_coding protein_coding MGP_C3HHeJ_T0039583.1 MGP_C3HHeJ_G0021217.1 mouse_genomes_project 14 59839697 59931041 + MGP_C3HHeJ_P0039583 Ints9 protein_coding protein_coding MGP_C3HHeJ_T0100174.1 MGP_C3HHeJ_G0038368.1 mouse_genomes_project 14 3736660 3736792 + Gm25466 snoRNA snoRNA MGP_C3HHeJ_T0039645.1 MGP_C3HHeJ_G0021242.1 mouse_genomes_project 14 61928819 61937717 + MGP_C3HHeJ_P0039645 Pnma2 protein_coding protein_coding MGP_C3HHeJ_T0039646.1 MGP_C3HHeJ_G0021242.1 mouse_genomes_project 14 61928857 61936478 + MGP_C3HHeJ_P0039646 Pnma2 protein_coding protein_coding MGP_C3HHeJ_T0039647.1 MGP_C3HHeJ_G0021242.1 mouse_genomes_project 14 61928891 61932384 + Pnma2 protein_coding processed_transcript MGP_C3HHeJ_T0039648.1 MGP_C3HHeJ_G0021242.1 mouse_genomes_project 14 61931973 61933674 + Pnma2 protein_coding processed_transcript MGP_C3HHeJ_T0009890.1 MGP_C3HHeJ_G0008023.1 mouse_genomes_project 14 18871326 18871436 - Gm23701 miRNA miRNA MGP_C3HHeJ_T0038113.1 MGP_C3HHeJ_G0020767.1 mouse_genomes_project 14 13228163 13257139 - MGP_C3HHeJ_P0038113 Ecd protein_coding protein_coding MGP_C3HHeJ_T0039706.1 MGP_C3HHeJ_G0021265.1 mouse_genomes_project 14 64558606 64569556 - MGP_C3HHeJ_P0039706 R3hcc1 protein_coding protein_coding MGP_C3HHeJ_T0039707.1 MGP_C3HHeJ_G0021265.1 mouse_genomes_project 14 64558607 64569465 - MGP_C3HHeJ_P0039707 R3hcc1 protein_coding protein_coding MGP_C3HHeJ_T0039708.1 MGP_C3HHeJ_G0021265.1 mouse_genomes_project 14 64559631 64561321 - R3hcc1 protein_coding retained_intron MGP_C3HHeJ_T0039709.1 MGP_C3HHeJ_G0021265.1 mouse_genomes_project 14 64564783 64567285 - R3hcc1 protein_coding retained_intron MGP_C3HHeJ_T0039710.1 MGP_C3HHeJ_G0021265.1 mouse_genomes_project 14 64567596 64569525 - R3hcc1 protein_coding processed_transcript MGP_C3HHeJ_T0009908.1 MGP_C3HHeJ_G0008041.1 mouse_genomes_project 14 56386882 56386966 - Mir15a miRNA miRNA MGP_C3HHeJ_T0040056.1 MGP_C3HHeJ_G0021393.1 mouse_genomes_project 14 114917425 114918154 + MGP_C3HHeJ_P0040056 Gm9376 protein_coding protein_coding MGP_C3HHeJ_T0009938.1 MGP_C3HHeJ_G0008071.1 mouse_genomes_project 14 114592734 114592839 - Mir6239 miRNA miRNA MGP_C3HHeJ_T0038886.1 MGP_C3HHeJ_G0020990.1 mouse_genomes_project 14 44679855 44681028 + MGP_C3HHeJ_P0038886 Olfr745 protein_coding protein_coding MGP_C3HHeJ_T0038931.1 MGP_C3HHeJ_G0021012.1 mouse_genomes_project 14 45180509 45186237 + MGP_C3HHeJ_P0038931 protein_coding protein_coding MGP_C3HHeJ_T0038932.1 MGP_C3HHeJ_G0021012.1 mouse_genomes_project 14 45185635 45186073 + MGP_C3HHeJ_P0038932 protein_coding protein_coding MGP_C3HHeJ_T0039345.1 MGP_C3HHeJ_G0021115.1 mouse_genomes_project 14 50279529 50283391 - MGP_C3HHeJ_P0039345 Ripk3 protein_coding protein_coding MGP_C3HHeJ_T0039346.1 MGP_C3HHeJ_G0021115.1 mouse_genomes_project 14 50279730 50283170 - MGP_C3HHeJ_P0039346 Ripk3 protein_coding protein_coding MGP_C3HHeJ_T0017194.1 MGP_C3HHeJ_G0015041.1 mouse_genomes_project 14 96118277 96151401 + 4930517O19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017195.1 MGP_C3HHeJ_G0015041.1 mouse_genomes_project 14 96118324 96152336 + 4930517O19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017196.1 MGP_C3HHeJ_G0015041.1 mouse_genomes_project 14 96118324 96150911 + 4930517O19Rik processed_transcript processed_transcript MGP_C3HHeJ_T0006635.1 MGP_C3HHeJ_G0005476.1 mouse_genomes_project 14 64406536 64415620 - Gm27174 lincRNA lincRNA MGP_C3HHeJ_T0012906.1 MGP_C3HHeJ_G0011010.1 mouse_genomes_project 14 101370737 101371294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038145.1 MGP_C3HHeJ_G0020777.1 mouse_genomes_project 14 13579544 13588909 - MGP_C3HHeJ_P0038145 Synpo2l protein_coding protein_coding MGP_C3HHeJ_T0038146.1 MGP_C3HHeJ_G0020777.1 mouse_genomes_project 14 13579546 13585173 - MGP_C3HHeJ_P0038146 Synpo2l protein_coding protein_coding MGP_C3HHeJ_T0038147.1 MGP_C3HHeJ_G0020777.1 mouse_genomes_project 14 13580016 13588957 - MGP_C3HHeJ_P0038147 Synpo2l protein_coding protein_coding MGP_C3HHeJ_T0098044.1 MGP_C3HHeJ_G0036256.1 mouse_genomes_project 14 98788705 98788753 + Gm23764 rRNA rRNA MGP_C3HHeJ_T0040099.1 MGP_C3HHeJ_G0021411.1 mouse_genomes_project 14 118874589 118878336 + MGP_C3HHeJ_P0040099 Timm8a2 protein_coding protein_coding MGP_C3HHeJ_T0098942.1 MGP_C3HHeJ_G0037136.1 mouse_genomes_project 14 70692273 70692380 - Gm23622 snRNA snRNA MGP_C3HHeJ_T0100187.1 MGP_C3HHeJ_G0038381.1 mouse_genomes_project 14 30677568 30677701 + Gm22469 snoRNA snoRNA MGP_C3HHeJ_T0003475.1 MGP_C3HHeJ_G0003162.1 mouse_genomes_project 14 48479562 48538318 - Gm42877 antisense antisense MGP_C3HHeJ_T0003476.1 MGP_C3HHeJ_G0003162.1 mouse_genomes_project 14 48517607 48538378 - Gm42877 antisense antisense MGP_C3HHeJ_T0100194.1 MGP_C3HHeJ_G0038388.1 mouse_genomes_project 14 51371302 51371388 - Gm22498 snoRNA snoRNA MGP_C3HHeJ_T0098931.1 MGP_C3HHeJ_G0037125.1 mouse_genomes_project 14 44999017 44999121 + Gm24689 snRNA snRNA MGP_C3HHeJ_T0039789.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68069148 68085622 + Rcbtb2 protein_coding retained_intron MGP_C3HHeJ_T0039790.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68069148 68092808 + MGP_C3HHeJ_P0039790 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039791.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68072906 68095197 + MGP_C3HHeJ_P0039791 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039792.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68072928 68097567 + MGP_C3HHeJ_P0039792 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039793.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073077 68085621 + Rcbtb2 protein_coding retained_intron MGP_C3HHeJ_T0039794.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073093 68092859 + MGP_C3HHeJ_P0039794 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039795.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073233 68131484 + MGP_C3HHeJ_P0039795 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039796.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073362 68095261 + MGP_C3HHeJ_P0039796 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039797.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073379 68094555 + Rcbtb2 protein_coding retained_intron MGP_C3HHeJ_T0039798.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073387 68085192 + Rcbtb2 protein_coding retained_intron MGP_C3HHeJ_T0039799.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073432 68115189 + MGP_C3HHeJ_P0039799 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039800.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073446 68114304 + MGP_C3HHeJ_P0039800 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039801.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073469 68115360 + MGP_C3HHeJ_P0039801 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039802.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073480 68085575 + Rcbtb2 protein_coding retained_intron MGP_C3HHeJ_T0039803.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073480 68097900 + MGP_C3HHeJ_P0039803 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039804.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073527 68095328 + MGP_C3HHeJ_P0039804 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039805.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073550 68113741 + MGP_C3HHeJ_P0039805 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039806.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68073770 68092439 + MGP_C3HHeJ_P0039806 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039807.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68092409 68113744 + MGP_C3HHeJ_P0039807 Rcbtb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039808.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68092409 68113741 + MGP_C3HHeJ_P0039808 Rcbtb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039809.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68104951 68113660 + MGP_C3HHeJ_P0039809 Rcbtb2 protein_coding protein_coding MGP_C3HHeJ_T0039810.1 MGP_C3HHeJ_G0021296.1 mouse_genomes_project 14 68105512 68113824 + Rcbtb2 protein_coding retained_intron MGP_C3HHeJ_T0098365.1 MGP_C3HHeJ_G0036573.1 mouse_genomes_project 14 17284239 17290501 - Gm17105 sense_intronic sense_intronic MGP_C3HHeJ_T0039674.1 MGP_C3HHeJ_G0021248.1 mouse_genomes_project 14 62796713 62800910 + MGP_C3HHeJ_P0039674 Gnrh1 protein_coding protein_coding MGP_C3HHeJ_T0012909.1 MGP_C3HHeJ_G0011013.1 mouse_genomes_project 14 110010857 110011299 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039531.1 MGP_C3HHeJ_G0021197.1 mouse_genomes_project 14 57863018 57864638 + MGP_C3HHeJ_P0039531 Defb42 protein_coding protein_coding MGP_C3HHeJ_T0039532.1 MGP_C3HHeJ_G0021197.1 mouse_genomes_project 14 57863056 57876801 + Defb42 protein_coding processed_transcript MGP_C3HHeJ_T0039533.1 MGP_C3HHeJ_G0021197.1 mouse_genomes_project 14 57863121 57864586 + MGP_C3HHeJ_P0039533 Defb42 protein_coding protein_coding MGP_C3HHeJ_T0039534.1 MGP_C3HHeJ_G0021197.1 mouse_genomes_project 14 57864256 57864603 + MGP_C3HHeJ_P0039534 Defb42 protein_coding protein_coding MGP_C3HHeJ_T0039535.1 MGP_C3HHeJ_G0021197.1 mouse_genomes_project 14 57873730 57875592 + Defb42 protein_coding processed_transcript MGP_C3HHeJ_T0006574.1 MGP_C3HHeJ_G0005434.1 mouse_genomes_project 14 8107665 8122263 + B230110C06Rik lincRNA lincRNA MGP_C3HHeJ_T0006575.1 MGP_C3HHeJ_G0005434.1 mouse_genomes_project 14 8108234 8121725 + B230110C06Rik lincRNA lincRNA MGP_C3HHeJ_T0100188.1 MGP_C3HHeJ_G0038382.1 mouse_genomes_project 14 30883064 30883195 - Gm23909 snoRNA snoRNA MGP_C3HHeJ_T0038635.1 MGP_C3HHeJ_G0020900.1 mouse_genomes_project 14 27417980 27441670 + MGP_C3HHeJ_P0038635 Antxrl protein_coding protein_coding MGP_C3HHeJ_T0039614.1 MGP_C3HHeJ_G0021231.1 mouse_genomes_project 14 60943829 60970603 - MGP_C3HHeJ_P0039614 Gulo protein_coding protein_coding MGP_C3HHeJ_T0003448.1 MGP_C3HHeJ_G0003142.1 mouse_genomes_project 14 13462441 13482029 + 1810062O18Rik antisense antisense MGP_C3HHeJ_T0003449.1 MGP_C3HHeJ_G0003142.1 mouse_genomes_project 14 13462476 13487567 + 1810062O18Rik antisense antisense MGP_C3HHeJ_T0003450.1 MGP_C3HHeJ_G0003142.1 mouse_genomes_project 14 13462619 13481997 + 1810062O18Rik antisense antisense MGP_C3HHeJ_T0003451.1 MGP_C3HHeJ_G0003142.1 mouse_genomes_project 14 13462655 13487704 + 1810062O18Rik antisense antisense MGP_C3HHeJ_T0003452.1 MGP_C3HHeJ_G0003142.1 mouse_genomes_project 14 13482034 13487711 + 1810062O18Rik antisense antisense MGP_C3HHeJ_T0038366.1 MGP_C3HHeJ_G0020836.1 mouse_genomes_project 14 23196041 23227487 + MGP_C3HHeJ_P0038366 Chdh protein_coding protein_coding MGP_C3HHeJ_T0038367.1 MGP_C3HHeJ_G0020836.1 mouse_genomes_project 14 23196189 23214237 + Chdh protein_coding processed_transcript MGP_C3HHeJ_T0038368.1 MGP_C3HHeJ_G0020836.1 mouse_genomes_project 14 23209663 23225270 + MGP_C3HHeJ_P0038368 Chdh protein_coding protein_coding MGP_C3HHeJ_T0006625.1 MGP_C3HHeJ_G0005470.1 mouse_genomes_project 14 56405341 56423680 + Gm27017 lincRNA lincRNA MGP_C3HHeJ_T0039389.1 MGP_C3HHeJ_G0021146.1 mouse_genomes_project 14 51677496 51680874 - MGP_C3HHeJ_P0039389 Gm4491 protein_coding protein_coding MGP_C3HHeJ_T0098035.1 MGP_C3HHeJ_G0036247.1 mouse_genomes_project 14 22171722 22171826 - Gm23999 rRNA rRNA MGP_C3HHeJ_T0101735.1 MGP_C3HHeJ_G0039700.1 mouse_genomes_project 14 29528020 29539859 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0038513.1 MGP_C3HHeJ_G0020865.1 mouse_genomes_project 14 24746118 24760898 + MGP_C3HHeJ_P0038513 Eaf1 protein_coding protein_coding MGP_C3HHeJ_T0003464.1 MGP_C3HHeJ_G0003151.1 mouse_genomes_project 14 23995953 24003249 - 1700087M22Rik antisense antisense MGP_C3HHeJ_T0038775.1 MGP_C3HHeJ_G0020952.1 mouse_genomes_project 14 40969219 41005124 - MGP_C3HHeJ_P0038775 Gch1 protein_coding protein_coding MGP_C3HHeJ_T0038701.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34598853 34619118 - MGP_C3HHeJ_P0038701 Fam213a protein_coding protein_coding MGP_C3HHeJ_T0038702.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34599649 34609779 - MGP_C3HHeJ_P0038702 Fam213a protein_coding protein_coding MGP_C3HHeJ_T0038703.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34602851 34610225 - MGP_C3HHeJ_P0038703 Fam213a protein_coding protein_coding MGP_C3HHeJ_T0038704.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34604119 34608350 - Fam213a protein_coding retained_intron MGP_C3HHeJ_T0038705.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34604157 34612222 - MGP_C3HHeJ_P0038705 Fam213a protein_coding protein_coding MGP_C3HHeJ_T0038706.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34604199 34619017 - MGP_C3HHeJ_P0038706 Fam213a protein_coding protein_coding MGP_C3HHeJ_T0038707.1 MGP_C3HHeJ_G0020928.1 mouse_genomes_project 14 34609286 34612166 - MGP_C3HHeJ_P0038707 Fam213a protein_coding protein_coding MGP_C3HHeJ_T0002492.1 MGP_C3HHeJ_G0002404.1 mouse_genomes_project 14 48595154 48595211 + MGP_C3HHeJ_P0002492 Traj33 TR_J_gene TR_J_gene MGP_C3HHeJ_T0012856.1 MGP_C3HHeJ_G0010960.1 mouse_genomes_project 14 19657651 19658449 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002556.1 MGP_C3HHeJ_G0002462.1 mouse_genomes_project 14 46832053 46832907 + MGP_C3HHeJ_P0002556 Trav2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002557.1 MGP_C3HHeJ_G0002462.1 mouse_genomes_project 14 46832148 46832907 + MGP_C3HHeJ_P0002557 Trav2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038455.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382335 24384189 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038456.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382335 24386155 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038457.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382335 24383171 - MGP_C3HHeJ_P0038457 Stab1 protein_coding protein_coding MGP_C3HHeJ_T0038458.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382335 24413186 - MGP_C3HHeJ_P0038458 Stab1 protein_coding protein_coding MGP_C3HHeJ_T0038459.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382339 24388776 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038460.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382339 24383497 - Stab1 protein_coding processed_transcript MGP_C3HHeJ_T0038461.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24382341 24387048 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038462.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24383291 24384266 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038463.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24384955 24386515 - MGP_C3HHeJ_P0038463 Stab1 protein_coding protein_coding MGP_C3HHeJ_T0038464.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24385706 24386320 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038465.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24399950 24400698 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038466.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24399950 24405143 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0038467.1 MGP_C3HHeJ_G0020855.1 mouse_genomes_project 14 24401823 24413140 - Stab1 protein_coding retained_intron MGP_C3HHeJ_T0002655.1 MGP_C3HHeJ_G0002537.1 mouse_genomes_project 14 47369769 47369937 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0038245.1 MGP_C3HHeJ_G0020798.1 mouse_genomes_project 14 17342581 17357354 + MGP_C3HHeJ_P0038245 E330034G19Rik protein_coding protein_coding MGP_C3HHeJ_T0038246.1 MGP_C3HHeJ_G0020798.1 mouse_genomes_project 14 17342603 17355659 + MGP_C3HHeJ_P0038246 E330034G19Rik protein_coding protein_coding MGP_C3HHeJ_T0038247.1 MGP_C3HHeJ_G0020798.1 mouse_genomes_project 14 17342651 17347651 + E330034G19Rik protein_coding retained_intron MGP_C3HHeJ_T0038248.1 MGP_C3HHeJ_G0020798.1 mouse_genomes_project 14 17342686 17357361 + MGP_C3HHeJ_P0038248 E330034G19Rik protein_coding protein_coding MGP_C3HHeJ_T0038249.1 MGP_C3HHeJ_G0020798.1 mouse_genomes_project 14 17342699 17347420 + MGP_C3HHeJ_P0038249 E330034G19Rik protein_coding protein_coding MGP_C3HHeJ_T0038250.1 MGP_C3HHeJ_G0020798.1 mouse_genomes_project 14 17342731 17357354 + MGP_C3HHeJ_P0038250 E330034G19Rik protein_coding protein_coding MGP_C3HHeJ_T0006621.1 MGP_C3HHeJ_G0005466.1 mouse_genomes_project 14 52170537 52171282 + 1700039M10Rik lincRNA lincRNA MGP_C3HHeJ_T0038328.1 MGP_C3HHeJ_G0020820.1 mouse_genomes_project 14 19762575 19772506 - MGP_C3HHeJ_P0038328 Pde12 protein_coding protein_coding MGP_C3HHeJ_T0038422.1 MGP_C3HHeJ_G0020848.1 mouse_genomes_project 14 24177107 24215487 + MGP_C3HHeJ_P0038422 Nek4 protein_coding protein_coding MGP_C3HHeJ_T0002490.1 MGP_C3HHeJ_G0002402.1 mouse_genomes_project 14 48593567 48593629 + MGP_C3HHeJ_P0002490 Traj35 TR_J_gene TR_J_gene MGP_C3HHeJ_T0100215.1 MGP_C3HHeJ_G0038409.1 mouse_genomes_project 14 92351502 92351632 + Gm25133 snoRNA snoRNA MGP_C3HHeJ_T0038591.1 MGP_C3HHeJ_G0020883.1 mouse_genomes_project 14 25897251 25948395 + MGP_C3HHeJ_P0038591 Prrxl1 protein_coding protein_coding MGP_C3HHeJ_T0038592.1 MGP_C3HHeJ_G0020883.1 mouse_genomes_project 14 25897252 25928203 + MGP_C3HHeJ_P0038592 Prrxl1 protein_coding protein_coding MGP_C3HHeJ_T0038593.1 MGP_C3HHeJ_G0020883.1 mouse_genomes_project 14 25897385 25928179 + MGP_C3HHeJ_P0038593 Prrxl1 protein_coding protein_coding MGP_C3HHeJ_T0038594.1 MGP_C3HHeJ_G0020883.1 mouse_genomes_project 14 25897711 25948437 + MGP_C3HHeJ_P0038594 Prrxl1 protein_coding protein_coding MGP_C3HHeJ_T0038919.1 MGP_C3HHeJ_G0021004.1 mouse_genomes_project 14 45030594 45040785 + MGP_C3HHeJ_P0038919 Pnp protein_coding protein_coding MGP_C3HHeJ_T0038920.1 MGP_C3HHeJ_G0021004.1 mouse_genomes_project 14 45030799 45039222 + MGP_C3HHeJ_P0038920 Pnp protein_coding protein_coding MGP_C3HHeJ_T0038757.1 MGP_C3HHeJ_G0020947.1 mouse_genomes_project 14 40552602 40563207 + MGP_C3HHeJ_P0038757 Cdkn3 protein_coding protein_coding MGP_C3HHeJ_T0038758.1 MGP_C3HHeJ_G0020947.1 mouse_genomes_project 14 40552701 40563169 + MGP_C3HHeJ_P0038758 Cdkn3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002605.1 MGP_C3HHeJ_G0002499.1 mouse_genomes_project 14 48557379 48558012 - MGP_C3HHeJ_P0002605 Trdv5 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002468.1 MGP_C3HHeJ_G0002383.1 mouse_genomes_project 14 48566083 48566146 + MGP_C3HHeJ_P0002468 Traj58 TR_J_gene TR_J_gene MGP_C3HHeJ_T0011273.1 MGP_C3HHeJ_G0009406.1 mouse_genomes_project 14 25098539 25098837 - Gm22876 misc_RNA misc_RNA MGP_C3HHeJ_T0038885.1 MGP_C3HHeJ_G0020989.1 mouse_genomes_project 14 44659536 44660641 + MGP_C3HHeJ_P0038885 Olfr744 protein_coding protein_coding MGP_C3HHeJ_T0039493.1 MGP_C3HHeJ_G0021179.1 mouse_genomes_project 14 55874092 55980334 + MGP_C3HHeJ_P0039493 protein_coding protein_coding MGP_C3HHeJ_T0039494.1 MGP_C3HHeJ_G0021179.1 mouse_genomes_project 14 55874126 55939374 + MGP_C3HHeJ_P0039494 protein_coding protein_coding MGP_C3HHeJ_T0039495.1 MGP_C3HHeJ_G0021179.1 mouse_genomes_project 14 55883685 55955206 + MGP_C3HHeJ_P0039495 protein_coding protein_coding MGP_C3HHeJ_T0039496.1 MGP_C3HHeJ_G0021179.1 mouse_genomes_project 14 55912742 55935361 + MGP_C3HHeJ_P0039496 protein_coding protein_coding MGP_C3HHeJ_T0039497.1 MGP_C3HHeJ_G0021179.1 mouse_genomes_project 14 55912957 55955211 + MGP_C3HHeJ_P0039497 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039498.1 MGP_C3HHeJ_G0021179.1 mouse_genomes_project 14 55928541 55944629 + protein_coding retained_intron MGP_C3HHeJ_T0006603.1 MGP_C3HHeJ_G0005454.1 mouse_genomes_project 14 40340470 40352848 + E130120K24Rik lincRNA lincRNA MGP_C3HHeJ_T0038294.1 MGP_C3HHeJ_G0020814.1 mouse_genomes_project 14 19327879 19337253 + MGP_C3HHeJ_P0038294 Duxbl3 protein_coding protein_coding MGP_C3HHeJ_T0038295.1 MGP_C3HHeJ_G0020814.1 mouse_genomes_project 14 19328197 19337444 + MGP_C3HHeJ_P0038295 Duxbl3 protein_coding protein_coding MGP_C3HHeJ_T0038297.1 MGP_C3HHeJ_G0020814.1 mouse_genomes_project 14 19328835 19335313 + MGP_C3HHeJ_P0038297 Duxbl3 protein_coding protein_coding MGP_C3HHeJ_T0038299.1 MGP_C3HHeJ_G0020814.1 mouse_genomes_project 14 19329169 19336051 + Duxbl3 protein_coding processed_transcript MGP_C3HHeJ_T0038302.1 MGP_C3HHeJ_G0020814.1 mouse_genomes_project 14 19331524 19338623 + MGP_C3HHeJ_P0038302 Duxbl3 protein_coding protein_coding MGP_C3HHeJ_T0039189.1 MGP_C3HHeJ_G0021079.1 mouse_genomes_project 14 49435917 49436008 + MGP_C3HHeJ_P0039189 Gm17428 protein_coding protein_coding MGP_C3HHeJ_T0003494.1 MGP_C3HHeJ_G0003175.1 mouse_genomes_project 14 58327399 58333573 + Gm17232 antisense antisense MGP_C3HHeJ_T0039479.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55357916 55419342 + MGP_C3HHeJ_P0039479 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039480.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55358158 55499879 + MGP_C3HHeJ_P0039480 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039481.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55358644 55499886 + MGP_C3HHeJ_P0039481 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039482.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55358649 55419383 + MGP_C3HHeJ_P0039482 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039483.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55358670 55418868 + Spata13 protein_coding processed_transcript MGP_C3HHeJ_T0039484.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55419949 55438735 + MGP_C3HHeJ_P0039484 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039485.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55432118 55436040 + Spata13 protein_coding processed_transcript MGP_C3HHeJ_T0039486.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55435898 55485101 + MGP_C3HHeJ_P0039486 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039487.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55462389 55499879 + MGP_C3HHeJ_P0039487 Spata13 protein_coding protein_coding MGP_C3HHeJ_T0039488.1 MGP_C3HHeJ_G0021175.1 mouse_genomes_project 14 55486161 55497996 + Spata13 protein_coding retained_intron MGP_C3HHeJ_T0038454.1 MGP_C3HHeJ_G0020854.1 mouse_genomes_project 14 24378346 24382444 + MGP_C3HHeJ_P0038454 Nt5dc2 protein_coding protein_coding MGP_C3HHeJ_T0039060.1 MGP_C3HHeJ_G0021039.1 mouse_genomes_project 14 46605400 46606342 - MGP_C3HHeJ_P0039060 Olfr1513 protein_coding protein_coding MGP_C3HHeJ_T0000879.1 MGP_C3HHeJ_G0000819.1 mouse_genomes_project 14 46512610 46518613 + TEC TEC MGP_C3HHeJ_T0003477.1 MGP_C3HHeJ_G0003163.1 mouse_genomes_project 14 48541281 48554968 - Gm43434 antisense antisense MGP_C3HHeJ_T0039385.1 MGP_C3HHeJ_G0021142.1 mouse_genomes_project 14 51431600 51513318 + MGP_C3HHeJ_P0039385 Zmym2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0097863.1 MGP_C3HHeJ_G0036075.1 mouse_genomes_project 14 102819344 102819534 - pseudogene pseudogene MGP_C3HHeJ_T0003470.1 MGP_C3HHeJ_G0003157.1 mouse_genomes_project 14 32765751 32797034 + Gm20642 antisense antisense MGP_C3HHeJ_T0038937.1 MGP_C3HHeJ_G0021017.1 mouse_genomes_project 14 45314780 45315393 + MGP_C3HHeJ_P0038937 Ear14 protein_coding protein_coding MGP_C3HHeJ_T0038338.1 MGP_C3HHeJ_G0020823.1 mouse_genomes_project 14 20021980 20072677 - MGP_C3HHeJ_P0038338 Appl1 protein_coding protein_coding MGP_C3HHeJ_T0038339.1 MGP_C3HHeJ_G0020823.1 mouse_genomes_project 14 20049405 20060040 - Appl1 protein_coding retained_intron MGP_C3HHeJ_T0038340.1 MGP_C3HHeJ_G0020823.1 mouse_genomes_project 14 20050702 20072723 - Appl1 protein_coding retained_intron MGP_C3HHeJ_T0038341.1 MGP_C3HHeJ_G0020823.1 mouse_genomes_project 14 20064829 20072686 - Appl1 protein_coding retained_intron MGP_C3HHeJ_T0038575.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25488841 25530234 + Parg protein_coding retained_intron MGP_C3HHeJ_T0038576.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25488841 25583709 + MGP_C3HHeJ_P0038576 Parg protein_coding protein_coding MGP_C3HHeJ_T0038577.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25488841 25585262 + MGP_C3HHeJ_P0038577 Parg protein_coding protein_coding MGP_C3HHeJ_T0038578.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25488841 25585592 + MGP_C3HHeJ_P0038578 Parg protein_coding protein_coding MGP_C3HHeJ_T0038579.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25488863 25496126 + MGP_C3HHeJ_P0038579 Parg protein_coding protein_coding MGP_C3HHeJ_T0038580.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25488924 25585262 + MGP_C3HHeJ_P0038580 Parg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038581.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25489328 25496077 + Parg protein_coding processed_transcript MGP_C3HHeJ_T0038582.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25501291 25529399 + MGP_C3HHeJ_P0038582 Parg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038583.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25529306 25550862 + Parg protein_coding processed_transcript MGP_C3HHeJ_T0038584.1 MGP_C3HHeJ_G0020877.1 mouse_genomes_project 14 25563785 25584386 + Parg protein_coding processed_transcript MGP_C3HHeJ_T0038496.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24500272 24508767 + MGP_C3HHeJ_P0038496 Bap1 protein_coding protein_coding MGP_C3HHeJ_T0038497.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24500325 24501837 + Bap1 protein_coding retained_intron MGP_C3HHeJ_T0038498.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24500333 24503024 + Bap1 protein_coding retained_intron MGP_C3HHeJ_T0038499.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24500360 24508753 + Bap1 protein_coding retained_intron MGP_C3HHeJ_T0038500.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24500402 24503960 + MGP_C3HHeJ_P0038500 Bap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038501.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24505091 24507347 + MGP_C3HHeJ_P0038501 Bap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038502.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24505361 24506464 + Bap1 protein_coding retained_intron MGP_C3HHeJ_T0038503.1 MGP_C3HHeJ_G0020860.1 mouse_genomes_project 14 24506313 24507711 + Bap1 protein_coding retained_intron MGP_C3HHeJ_T0039605.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60922989 60938591 + MGP_C3HHeJ_P0039605 Clu protein_coding protein_coding MGP_C3HHeJ_T0039606.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60923148 60932689 + MGP_C3HHeJ_P0039606 Clu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039607.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60923160 60929581 + Clu protein_coding retained_intron MGP_C3HHeJ_T0039608.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60924224 60933004 + MGP_C3HHeJ_P0039608 Clu protein_coding protein_coding MGP_C3HHeJ_T0039609.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60925126 60932908 + MGP_C3HHeJ_P0039609 Clu protein_coding protein_coding MGP_C3HHeJ_T0039610.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60925292 60932885 + MGP_C3HHeJ_P0039610 Clu protein_coding protein_coding MGP_C3HHeJ_T0039611.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60928101 60932820 + MGP_C3HHeJ_P0039611 Clu protein_coding protein_coding MGP_C3HHeJ_T0039612.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60928346 60932006 + MGP_C3HHeJ_P0039612 Clu protein_coding protein_coding MGP_C3HHeJ_T0039613.1 MGP_C3HHeJ_G0021230.1 mouse_genomes_project 14 60931712 60933017 + Clu protein_coding retained_intron MGP_C3HHeJ_T0038538.1 MGP_C3HHeJ_G0020870.1 mouse_genomes_project 14 25307459 25343400 + MGP_C3HHeJ_P0038538 Galnt15 protein_coding protein_coding MGP_C3HHeJ_T0038539.1 MGP_C3HHeJ_G0020870.1 mouse_genomes_project 14 25307880 25341430 + MGP_C3HHeJ_P0038539 Galnt15 protein_coding protein_coding MGP_C3HHeJ_T0011284.1 MGP_C3HHeJ_G0009417.1 mouse_genomes_project 14 60097989 60098065 - Gm27263 misc_RNA misc_RNA MGP_C3HHeJ_T0038423.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24230447 24232231 - MGP_C3HHeJ_P0038423 Spcs1 protein_coding protein_coding MGP_C3HHeJ_T0038424.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24230447 24232294 - MGP_C3HHeJ_P0038424 Spcs1 protein_coding protein_coding MGP_C3HHeJ_T0038425.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24230448 24232288 - MGP_C3HHeJ_P0038425 Spcs1 protein_coding protein_coding MGP_C3HHeJ_T0038426.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24230448 24231985 - MGP_C3HHeJ_P0038426 Spcs1 protein_coding protein_coding MGP_C3HHeJ_T0038427.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24230449 24231991 - Spcs1 protein_coding retained_intron MGP_C3HHeJ_T0038428.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24230838 24231972 - Spcs1 protein_coding retained_intron MGP_C3HHeJ_T0038429.1 MGP_C3HHeJ_G0020849.1 mouse_genomes_project 14 24231017 24231989 - MGP_C3HHeJ_P0038429 Spcs1 protein_coding protein_coding MGP_C3HHeJ_T0012889.1 MGP_C3HHeJ_G0010993.1 mouse_genomes_project 14 59730059 59730378 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012864.1 MGP_C3HHeJ_G0010968.1 mouse_genomes_project 14 38640302 38641468 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039931.1 MGP_C3HHeJ_G0021347.1 mouse_genomes_project 14 75194925 75216583 + MGP_C3HHeJ_P0039931 Olfm4 protein_coding protein_coding MGP_C3HHeJ_T0039932.1 MGP_C3HHeJ_G0021347.1 mouse_genomes_project 14 75194948 75216583 + MGP_C3HHeJ_P0039932 Olfm4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002563.1 MGP_C3HHeJ_G0002467.1 mouse_genomes_project 14 46951029 46951555 + MGP_C3HHeJ_P0002563 Trav4-2 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002486.1 MGP_C3HHeJ_G0002398.1 mouse_genomes_project 14 48587714 48587775 + MGP_C3HHeJ_P0002486 Traj40 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039600.1 MGP_C3HHeJ_G0021227.1 mouse_genomes_project 14 60747231 60762133 - MGP_C3HHeJ_P0039600 Esco2 protein_coding protein_coding MGP_C3HHeJ_T0039601.1 MGP_C3HHeJ_G0021227.1 mouse_genomes_project 14 60754201 60755397 - Esco2 protein_coding processed_transcript MGP_C3HHeJ_T0039602.1 MGP_C3HHeJ_G0021227.1 mouse_genomes_project 14 60755150 60757084 - Esco2 protein_coding processed_transcript MGP_C3HHeJ_T0039617.1 MGP_C3HHeJ_G0021234.1 mouse_genomes_project 14 61103400 61119528 + MGP_C3HHeJ_P0039617 Chrna2 protein_coding protein_coding MGP_C3HHeJ_T0039618.1 MGP_C3HHeJ_G0021234.1 mouse_genomes_project 14 61109294 61121309 + MGP_C3HHeJ_P0039618 Chrna2 protein_coding protein_coding MGP_C3HHeJ_T0003499.1 MGP_C3HHeJ_G0003180.1 mouse_genomes_project 14 64241664 64248731 - 1700092C10Rik antisense antisense MGP_C3HHeJ_T0039509.1 MGP_C3HHeJ_G0021187.1 mouse_genomes_project 14 57068181 57132199 + MGP_C3HHeJ_P0039509 Rnaseh2b protein_coding protein_coding MGP_C3HHeJ_T0039510.1 MGP_C3HHeJ_G0021187.1 mouse_genomes_project 14 57109749 57152767 + MGP_C3HHeJ_P0039510 Rnaseh2b protein_coding protein_coding MGP_C3HHeJ_T0039511.1 MGP_C3HHeJ_G0021187.1 mouse_genomes_project 14 57109806 57143875 + MGP_C3HHeJ_P0039511 Rnaseh2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039512.1 MGP_C3HHeJ_G0021187.1 mouse_genomes_project 14 57125933 57133968 + Rnaseh2b protein_coding retained_intron MGP_C3HHeJ_T0002662.1 MGP_C3HHeJ_G0002544.1 mouse_genomes_project 14 48335488 48336107 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0039354.1 MGP_C3HHeJ_G0021120.1 mouse_genomes_project 14 50396700 50399647 - MGP_C3HHeJ_P0039354 Sdr39u1 protein_coding protein_coding MGP_C3HHeJ_T0002591.1 MGP_C3HHeJ_G0002489.1 mouse_genomes_project 14 48172720 48173327 + MGP_C3HHeJ_P0002591 B230359F08Rik TR_V_gene TR_V_gene MGP_C3HHeJ_T0100176.1 MGP_C3HHeJ_G0038370.1 mouse_genomes_project 14 11527838 11527973 + Gm22499 snoRNA snoRNA MGP_C3HHeJ_T0003519.1 MGP_C3HHeJ_G0003193.1 mouse_genomes_project 14 120878956 120880366 + Gm28932 antisense antisense MGP_C3HHeJ_T0038598.1 MGP_C3HHeJ_G0020887.1 mouse_genomes_project 14 26164191 26249686 + MGP_C3HHeJ_P0038598 Vstm4 protein_coding protein_coding MGP_C3HHeJ_T0009931.1 MGP_C3HHeJ_G0008064.1 mouse_genomes_project 14 107692318 107692407 + Gm22802 miRNA miRNA MGP_C3HHeJ_T0039371.1 MGP_C3HHeJ_G0021137.1 mouse_genomes_project 14 51053925 51099865 - MGP_C3HHeJ_P0039371 Cenpj protein_coding protein_coding MGP_C3HHeJ_T0039372.1 MGP_C3HHeJ_G0021137.1 mouse_genomes_project 14 51054083 51093195 - MGP_C3HHeJ_P0039372 Cenpj protein_coding unknown_likely_coding MGP_C3HHeJ_T0040043.1 MGP_C3HHeJ_G0021386.1 mouse_genomes_project 14 108106507 108115251 + MGP_C3HHeJ_P0040043 Slitrk5 protein_coding protein_coding MGP_C3HHeJ_T0009913.1 MGP_C3HHeJ_G0008046.1 mouse_genomes_project 14 59463086 59463173 + Mir3078 miRNA miRNA MGP_C3HHeJ_T0038923.1 MGP_C3HHeJ_G0021006.1 mouse_genomes_project 14 45110933 45114346 - MGP_C3HHeJ_P0038923 Rnase9 protein_coding protein_coding MGP_C3HHeJ_T0006652.1 MGP_C3HHeJ_G0005490.1 mouse_genomes_project 14 115410876 115418164 - Gm27198 lincRNA lincRNA MGP_C3HHeJ_T0009924.1 MGP_C3HHeJ_G0008057.1 mouse_genomes_project 14 74918654 74918752 + Mir759 miRNA miRNA MGP_C3HHeJ_T0039643.1 MGP_C3HHeJ_G0021240.1 mouse_genomes_project 14 61815432 61885349 - MGP_C3HHeJ_P0039643 Dpysl2 protein_coding protein_coding MGP_C3HHeJ_T0039755.1 MGP_C3HHeJ_G0021283.1 mouse_genomes_project 14 65426752 65435510 + MGP_C3HHeJ_P0039755 Lgi3 protein_coding protein_coding MGP_C3HHeJ_T0100213.1 MGP_C3HHeJ_G0038407.1 mouse_genomes_project 14 87974848 87974978 - Gm24127 snoRNA snoRNA MGP_C3HHeJ_T0038781.1 MGP_C3HHeJ_G0020954.1 mouse_genomes_project 14 41107889 41129580 + MGP_C3HHeJ_P0038781 Socs4 protein_coding protein_coding MGP_C3HHeJ_T0002509.1 MGP_C3HHeJ_G0002421.1 mouse_genomes_project 14 48613172 48613233 + MGP_C3HHeJ_P0002509 Traj16 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039731.1 MGP_C3HHeJ_G0021275.1 mouse_genomes_project 14 65057154 65085680 - MGP_C3HHeJ_P0039731 Sorbs3 protein_coding protein_coding MGP_C3HHeJ_T0039732.1 MGP_C3HHeJ_G0021275.1 mouse_genomes_project 14 65057856 65083928 - MGP_C3HHeJ_P0039732 Sorbs3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017148.1 MGP_C3HHeJ_G0015026.1 mouse_genomes_project 14 51091 78369 + Gm16741 processed_transcript processed_transcript MGP_C3HHeJ_T0038032.1 MGP_C3HHeJ_G0020739.1 mouse_genomes_project 14 6519048 6531302 - MGP_C3HHeJ_P0038032 Thoc7 protein_coding protein_coding MGP_C3HHeJ_T0038272.1 MGP_C3HHeJ_G0020807.1 mouse_genomes_project 14 18936151 18953319 - MGP_C3HHeJ_P0038272 Plac9a protein_coding protein_coding MGP_C3HHeJ_T0038273.1 MGP_C3HHeJ_G0020807.1 mouse_genomes_project 14 18936534 18939031 - MGP_C3HHeJ_P0038273 Plac9a protein_coding protein_coding MGP_C3HHeJ_T0038274.1 MGP_C3HHeJ_G0020807.1 mouse_genomes_project 14 18936534 18952693 - MGP_C3HHeJ_P0038274 Plac9a protein_coding protein_coding MGP_C3HHeJ_T0038276.1 MGP_C3HHeJ_G0020807.1 mouse_genomes_project 14 18936578 18952695 - MGP_C3HHeJ_P0038276 Plac9a protein_coding protein_coding MGP_C3HHeJ_T0038895.1 MGP_C3HHeJ_G0020998.1 mouse_genomes_project 14 44895827 44945185 - MGP_C3HHeJ_P0038895 Tep1 protein_coding protein_coding MGP_C3HHeJ_T0039356.1 MGP_C3HHeJ_G0021122.1 mouse_genomes_project 14 50535624 50538052 + MGP_C3HHeJ_P0039356 Mcpt1 protein_coding protein_coding MGP_C3HHeJ_T0012841.1 MGP_C3HHeJ_G0010945.1 mouse_genomes_project 14 5335207 5335543 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098939.1 MGP_C3HHeJ_G0037133.1 mouse_genomes_project 14 57918905 57918992 + Gm23629 snRNA snRNA MGP_C3HHeJ_T0038372.1 MGP_C3HHeJ_G0020838.1 mouse_genomes_project 14 23687959 23736140 + MGP_C3HHeJ_P0038372 Dcp1a protein_coding protein_coding MGP_C3HHeJ_T0003442.1 MGP_C3HHeJ_G0003138.1 mouse_genomes_project 14 3101541 3140466 + Fhitos antisense antisense MGP_C3HHeJ_T0039126.1 MGP_C3HHeJ_G0021060.1 mouse_genomes_project 14 49054722 49059066 + MGP_C3HHeJ_P0039126 Psmb11 protein_coding protein_coding MGP_C3HHeJ_T0039933.1 MGP_C3HHeJ_G0021348.1 mouse_genomes_project 14 79769784 79867040 + MGP_C3HHeJ_P0039933 Pcdh17 protein_coding protein_coding MGP_C3HHeJ_T0038964.1 MGP_C3HHeJ_G0021025.1 mouse_genomes_project 14 46168358 46170641 + MGP_C3HHeJ_P0038964 Tppp2 protein_coding protein_coding MGP_C3HHeJ_T0038965.1 MGP_C3HHeJ_G0021025.1 mouse_genomes_project 14 46168710 46170641 + MGP_C3HHeJ_P0038965 Tppp2 protein_coding protein_coding MGP_C3HHeJ_T0009891.1 MGP_C3HHeJ_G0008024.1 mouse_genomes_project 14 19772169 19772231 - Mir7672 miRNA miRNA MGP_C3HHeJ_T0038870.1 MGP_C3HHeJ_G0020977.1 mouse_genomes_project 14 44256892 44257873 - MGP_C3HHeJ_P0038870 Olfr731 protein_coding protein_coding MGP_C3HHeJ_T0009892.1 MGP_C3HHeJ_G0008025.1 mouse_genomes_project 14 20514003 20514126 - Gm23633 miRNA miRNA MGP_C3HHeJ_T0100211.1 MGP_C3HHeJ_G0038405.1 mouse_genomes_project 14 85936211 85936342 + Gm25495 snoRNA snoRNA MGP_C3HHeJ_T0039748.1 MGP_C3HHeJ_G0021279.1 mouse_genomes_project 14 65334514 65339238 - MGP_C3HHeJ_P0039748 Polr3d protein_coding protein_coding MGP_C3HHeJ_T0039749.1 MGP_C3HHeJ_G0021279.1 mouse_genomes_project 14 65334514 65338994 - MGP_C3HHeJ_P0039749 Polr3d protein_coding protein_coding MGP_C3HHeJ_T0039851.1 MGP_C3HHeJ_G0021310.1 mouse_genomes_project 14 70260356 70304805 + MGP_C3HHeJ_P0039851 Cpb2 protein_coding protein_coding MGP_C3HHeJ_T0039828.1 MGP_C3HHeJ_G0021304.1 mouse_genomes_project 14 69642624 69714006 + MGP_C3HHeJ_P0039828 Htr2a protein_coding protein_coding MGP_C3HHeJ_T0039818.1 MGP_C3HHeJ_G0021299.1 mouse_genomes_project 14 68301478 68325099 - MGP_C3HHeJ_P0039818 Itm2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0039819.1 MGP_C3HHeJ_G0021299.1 mouse_genomes_project 14 68301480 68325244 - MGP_C3HHeJ_P0039819 Itm2b protein_coding protein_coding MGP_C3HHeJ_T0039571.1 MGP_C3HHeJ_G0021215.1 mouse_genomes_project 14 59533659 59696867 + MGP_C3HHeJ_P0039571 Kif13b protein_coding protein_coding MGP_C3HHeJ_T0039572.1 MGP_C3HHeJ_G0021215.1 mouse_genomes_project 14 59533730 59700191 + MGP_C3HHeJ_P0039572 Kif13b protein_coding unknown_likely_coding MGP_C3HHeJ_T0038862.1 MGP_C3HHeJ_G0020970.1 mouse_genomes_project 14 43957855 43958861 - MGP_C3HHeJ_P0038862 Olfr724 protein_coding protein_coding MGP_C3HHeJ_T0038863.1 MGP_C3HHeJ_G0020970.1 mouse_genomes_project 14 43957855 43964949 - MGP_C3HHeJ_P0038863 Olfr724 protein_coding protein_coding MGP_C3HHeJ_T0038154.1 MGP_C3HHeJ_G0020783.1 mouse_genomes_project 14 13656102 13716932 - MGP_C3HHeJ_P0038154 Camk2g protein_coding unknown_likely_coding MGP_C3HHeJ_T0038155.1 MGP_C3HHeJ_G0020783.1 mouse_genomes_project 14 13656107 13715250 - MGP_C3HHeJ_P0038155 Camk2g protein_coding protein_coding MGP_C3HHeJ_T0038156.1 MGP_C3HHeJ_G0020783.1 mouse_genomes_project 14 13656107 13715250 - MGP_C3HHeJ_P0038156 Camk2g protein_coding protein_coding MGP_C3HHeJ_T0038157.1 MGP_C3HHeJ_G0020783.1 mouse_genomes_project 14 13656107 13715250 - MGP_C3HHeJ_P0038157 Camk2g protein_coding protein_coding MGP_C3HHeJ_T0038789.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41230121 41236582 - MGP_C3HHeJ_P0038789 Dlgap5 protein_coding protein_coding MGP_C3HHeJ_T0038790.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41230343 41263866 - MGP_C3HHeJ_P0038790 Dlgap5 protein_coding protein_coding MGP_C3HHeJ_T0038791.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41231030 41263798 - Dlgap5 protein_coding retained_intron MGP_C3HHeJ_T0038792.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41232150 41263828 - Dlgap5 protein_coding retained_intron MGP_C3HHeJ_T0038793.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41236177 41238294 - Dlgap5 protein_coding retained_intron MGP_C3HHeJ_T0038794.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41243772 41257372 - MGP_C3HHeJ_P0038794 Dlgap5 protein_coding protein_coding MGP_C3HHeJ_T0038795.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41259217 41263821 - Dlgap5 protein_coding retained_intron MGP_C3HHeJ_T0038796.1 MGP_C3HHeJ_G0020957.1 mouse_genomes_project 14 41259749 41262134 - Dlgap5 protein_coding processed_transcript MGP_C3HHeJ_T0039253.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057223 50060447 + MGP_C3HHeJ_P0039253 Psme1 protein_coding protein_coding MGP_C3HHeJ_T0039254.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057460 50060629 + MGP_C3HHeJ_P0039254 Psme1 protein_coding protein_coding MGP_C3HHeJ_T0039255.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057505 50059743 + Psme1 protein_coding retained_intron MGP_C3HHeJ_T0039256.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057556 50060629 + Psme1 protein_coding retained_intron MGP_C3HHeJ_T0039257.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057568 50060475 + Psme1 protein_coding retained_intron MGP_C3HHeJ_T0039258.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057586 50059504 + Psme1 protein_coding retained_intron MGP_C3HHeJ_T0039259.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057638 50060043 + MGP_C3HHeJ_P0039259 Psme1 protein_coding protein_coding MGP_C3HHeJ_T0039260.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057675 50060482 + MGP_C3HHeJ_P0039260 Psme1 protein_coding protein_coding MGP_C3HHeJ_T0039261.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50057675 50060482 + MGP_C3HHeJ_P0039261 Psme1 protein_coding protein_coding MGP_C3HHeJ_T0039262.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50059064 50060552 + Psme1 protein_coding retained_intron MGP_C3HHeJ_T0039263.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50059134 50060048 + Psme1 protein_coding retained_intron MGP_C3HHeJ_T0039264.1 MGP_C3HHeJ_G0021094.1 mouse_genomes_project 14 50059848 50060630 + MGP_C3HHeJ_P0039264 Psme1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038110.1 MGP_C3HHeJ_G0020764.1 mouse_genomes_project 14 13048185 13090157 - MGP_C3HHeJ_P0038110 Kcnk5 protein_coding protein_coding MGP_C3HHeJ_T0006607.1 MGP_C3HHeJ_G0005457.1 mouse_genomes_project 14 42593565 42733363 + Otx2os1 lincRNA lincRNA MGP_C3HHeJ_T0006608.1 MGP_C3HHeJ_G0005457.1 mouse_genomes_project 14 42594436 42647677 + Otx2os1 lincRNA lincRNA MGP_C3HHeJ_T0006609.1 MGP_C3HHeJ_G0005457.1 mouse_genomes_project 14 42594541 42645613 + Otx2os1 lincRNA lincRNA MGP_C3HHeJ_T0012871.1 MGP_C3HHeJ_G0010975.1 mouse_genomes_project 14 44682980 44683263 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039589.1 MGP_C3HHeJ_G0021221.1 mouse_genomes_project 14 60253716 60294842 + MGP_C3HHeJ_P0039589 Zfp395 protein_coding protein_coding MGP_C3HHeJ_T0009920.1 MGP_C3HHeJ_G0008053.1 mouse_genomes_project 14 68130403 68130492 - Mir687 miRNA miRNA MGP_C3HHeJ_T0039467.1 MGP_C3HHeJ_G0021169.1 mouse_genomes_project 14 54334894 54341265 + MGP_C3HHeJ_P0039467 Shisa2 protein_coding protein_coding MGP_C3HHeJ_T0039452.1 MGP_C3HHeJ_G0021163.1 mouse_genomes_project 14 53911574 54047315 - Phf11d protein_coding retained_intron MGP_C3HHeJ_T0039453.1 MGP_C3HHeJ_G0021163.1 mouse_genomes_project 14 53911574 54047319 - MGP_C3HHeJ_P0039453 Phf11d protein_coding protein_coding MGP_C3HHeJ_T0039455.1 MGP_C3HHeJ_G0021163.1 mouse_genomes_project 14 54031640 54047285 - MGP_C3HHeJ_P0039455 Phf11d protein_coding protein_coding MGP_C3HHeJ_T0006584.1 MGP_C3HHeJ_G0005441.1 mouse_genomes_project 14 18380682 18406357 - Gm26660 lincRNA lincRNA MGP_C3HHeJ_T0039463.1 MGP_C3HHeJ_G0021168.1 mouse_genomes_project 14 54267454 54304980 - MGP_C3HHeJ_P0039463 Cdadc1 protein_coding protein_coding MGP_C3HHeJ_T0039464.1 MGP_C3HHeJ_G0021168.1 mouse_genomes_project 14 54267454 54304980 - MGP_C3HHeJ_P0039464 Cdadc1 protein_coding protein_coding MGP_C3HHeJ_T0039465.1 MGP_C3HHeJ_G0021168.1 mouse_genomes_project 14 54271056 54304980 - MGP_C3HHeJ_P0039465 Cdadc1 protein_coding protein_coding MGP_C3HHeJ_T0039466.1 MGP_C3HHeJ_G0021168.1 mouse_genomes_project 14 54274294 54304980 - MGP_C3HHeJ_P0039466 Cdadc1 protein_coding protein_coding MGP_C3HHeJ_T0101355.1 MGP_C3HHeJ_G0039425.1 mouse_genomes_project 14 64469873 64551551 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0039087.1 MGP_C3HHeJ_G0021048.1 mouse_genomes_project 14 48695471 48696502 - MGP_C3HHeJ_P0039087 Olfr49 protein_coding protein_coding MGP_C3HHeJ_T0012872.1 MGP_C3HHeJ_G0010976.1 mouse_genomes_project 14 44832003 44832554 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037983.1 MGP_C3HHeJ_G0020723.1 mouse_genomes_project 14 414573 487431 + MGP_C3HHeJ_P0037983 Pxk protein_coding protein_coding MGP_C3HHeJ_T0037984.1 MGP_C3HHeJ_G0020723.1 mouse_genomes_project 14 414573 487431 + MGP_C3HHeJ_P0037984 Pxk protein_coding protein_coding MGP_C3HHeJ_T0038021.1 MGP_C3HHeJ_G0020735.1 mouse_genomes_project 14 4805764 5290338 - MGP_C3HHeJ_P0038021 Cadps protein_coding protein_coding MGP_C3HHeJ_T0038022.1 MGP_C3HHeJ_G0020735.1 mouse_genomes_project 14 4805766 5290338 - MGP_C3HHeJ_P0038022 Cadps protein_coding protein_coding MGP_C3HHeJ_T0038023.1 MGP_C3HHeJ_G0020735.1 mouse_genomes_project 14 4805766 5290338 - MGP_C3HHeJ_P0038023 Cadps protein_coding protein_coding MGP_C3HHeJ_T0038024.1 MGP_C3HHeJ_G0020735.1 mouse_genomes_project 14 4805766 5290338 - MGP_C3HHeJ_P0038024 Cadps protein_coding protein_coding MGP_C3HHeJ_T0100231.1 MGP_C3HHeJ_G0038425.1 mouse_genomes_project 14 120831237 120831365 + Gm25272 snoRNA snoRNA MGP_C3HHeJ_T0000885.1 MGP_C3HHeJ_G0000825.1 mouse_genomes_project 14 56433799 56438705 - TEC TEC MGP_C3HHeJ_T0039183.1 MGP_C3HHeJ_G0021077.1 mouse_genomes_project 14 49398157 49425948 - MGP_C3HHeJ_P0039183 Myh6 protein_coding protein_coding MGP_C3HHeJ_T0039184.1 MGP_C3HHeJ_G0021077.1 mouse_genomes_project 14 49398219 49424797 - MGP_C3HHeJ_P0039184 Myh6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039185.1 MGP_C3HHeJ_G0021077.1 mouse_genomes_project 14 49423310 49425882 - MGP_C3HHeJ_P0039185 Myh6 protein_coding protein_coding MGP_C3HHeJ_T0039186.1 MGP_C3HHeJ_G0021077.1 mouse_genomes_project 14 49423310 49425912 - MGP_C3HHeJ_P0039186 Myh6 protein_coding protein_coding MGP_C3HHeJ_T0039187.1 MGP_C3HHeJ_G0021077.1 mouse_genomes_project 14 49424621 49426234 - MGP_C3HHeJ_P0039187 Myh6 protein_coding protein_coding MGP_C3HHeJ_T0098926.1 MGP_C3HHeJ_G0037120.1 mouse_genomes_project 14 42698866 42698971 - Gm22699 snRNA snRNA MGP_C3HHeJ_T0038495.1 MGP_C3HHeJ_G0020859.1 mouse_genomes_project 14 24484620 24500041 - MGP_C3HHeJ_P0038495 Phf7 protein_coding protein_coding MGP_C3HHeJ_T0000876.1 MGP_C3HHeJ_G0000816.1 mouse_genomes_project 14 39833295 39851026 - TEC TEC MGP_C3HHeJ_T0098956.1 MGP_C3HHeJ_G0037150.1 mouse_genomes_project 14 100625753 100625860 + Gm22021 snRNA snRNA MGP_C3HHeJ_T0012901.1 MGP_C3HHeJ_G0011005.1 mouse_genomes_project 14 94530131 94531071 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017182.1 MGP_C3HHeJ_G0015036.1 mouse_genomes_project 14 62364166 62432127 - 4930438E09Rik processed_transcript processed_transcript MGP_C3HHeJ_T0039934.1 MGP_C3HHeJ_G0021349.1 mouse_genomes_project 14 82061869 82569598 - MGP_C3HHeJ_P0039934 Diaph3 protein_coding protein_coding MGP_C3HHeJ_T0039935.1 MGP_C3HHeJ_G0021349.1 mouse_genomes_project 14 82062784 82569488 - MGP_C3HHeJ_P0039935 Diaph3 protein_coding protein_coding MGP_C3HHeJ_T0040097.1 MGP_C3HHeJ_G0021409.1 mouse_genomes_project 14 118750999 118755324 - MGP_C3HHeJ_P0040097 Gpr18 protein_coding protein_coding MGP_C3HHeJ_T0000880.1 MGP_C3HHeJ_G0000820.1 mouse_genomes_project 14 46622080 46624422 - TEC TEC MGP_C3HHeJ_T0017180.1 MGP_C3HHeJ_G0015034.1 mouse_genomes_project 14 62264803 62265495 - Gm20675 processed_transcript processed_transcript MGP_C3HHeJ_T0039691.1 MGP_C3HHeJ_G0021260.1 mouse_genomes_project 14 64367917 64372873 - MGP_C3HHeJ_P0039691 Synb protein_coding protein_coding MGP_C3HHeJ_T0100200.1 MGP_C3HHeJ_G0038394.1 mouse_genomes_project 14 59642933 59643069 + Gm26225 snoRNA snoRNA MGP_C3HHeJ_T0011275.1 MGP_C3HHeJ_G0009408.1 mouse_genomes_project 14 29001872 29002040 + Gm27617 misc_RNA misc_RNA MGP_C3HHeJ_T0039976.1 MGP_C3HHeJ_G0021364.1 mouse_genomes_project 14 97575338 97582259 - MGP_C3HHeJ_P0039976 Commd6 protein_coding protein_coding MGP_C3HHeJ_T0039977.1 MGP_C3HHeJ_G0021364.1 mouse_genomes_project 14 97575339 97582044 - MGP_C3HHeJ_P0039977 Commd6 protein_coding protein_coding MGP_C3HHeJ_T0039978.1 MGP_C3HHeJ_G0021364.1 mouse_genomes_project 14 97581628 97582259 - Commd6 protein_coding retained_intron MGP_C3HHeJ_T0009911.1 MGP_C3HHeJ_G0008044.1 mouse_genomes_project 14 58582905 58582984 + Mir598 miRNA miRNA MGP_C3HHeJ_T0038025.1 MGP_C3HHeJ_G0020736.1 mouse_genomes_project 14 5811503 6160240 + MGP_C3HHeJ_P0038025 Synpr protein_coding protein_coding MGP_C3HHeJ_T0038026.1 MGP_C3HHeJ_G0020736.1 mouse_genomes_project 14 5993707 6099145 + MGP_C3HHeJ_P0038026 Synpr protein_coding protein_coding MGP_C3HHeJ_T0038027.1 MGP_C3HHeJ_G0020736.1 mouse_genomes_project 14 5993733 6102839 + Synpr protein_coding retained_intron MGP_C3HHeJ_T0038028.1 MGP_C3HHeJ_G0020736.1 mouse_genomes_project 14 5993806 6160240 + MGP_C3HHeJ_P0038028 Synpr protein_coding protein_coding MGP_C3HHeJ_T0038029.1 MGP_C3HHeJ_G0020736.1 mouse_genomes_project 14 5993820 6153864 + Synpr protein_coding retained_intron MGP_C3HHeJ_T0003478.1 MGP_C3HHeJ_G0003164.1 mouse_genomes_project 14 49080073 49084271 + 4930579G18Rik antisense antisense MGP_C3HHeJ_T0000896.1 MGP_C3HHeJ_G0000836.1 mouse_genomes_project 14 88108506 88108877 + TEC TEC MGP_C3HHeJ_T0101730.1 MGP_C3HHeJ_G0039695.1 mouse_genomes_project 14 11559637 11559785 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039662.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62727816 62767353 - MGP_C3HHeJ_P0039662 Cdca2 protein_coding protein_coding MGP_C3HHeJ_T0039663.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62727840 62767122 - MGP_C3HHeJ_P0039663 Cdca2 protein_coding protein_coding MGP_C3HHeJ_T0039664.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62729281 62748225 - MGP_C3HHeJ_P0039664 Cdca2 protein_coding protein_coding MGP_C3HHeJ_T0039665.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62731788 62767122 - MGP_C3HHeJ_P0039665 Cdca2 protein_coding protein_coding MGP_C3HHeJ_T0039666.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62745599 62749472 - MGP_C3HHeJ_P0039666 Cdca2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039667.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62750426 62766887 - Cdca2 protein_coding retained_intron MGP_C3HHeJ_T0039668.1 MGP_C3HHeJ_G0021246.1 mouse_genomes_project 14 62751762 62767193 - MGP_C3HHeJ_P0039668 Cdca2 protein_coding protein_coding MGP_C3HHeJ_T0039380.1 MGP_C3HHeJ_G0021140.1 mouse_genomes_project 14 51252513 51309032 - MGP_C3HHeJ_P0039380 Pspc1 protein_coding protein_coding MGP_C3HHeJ_T0039381.1 MGP_C3HHeJ_G0021140.1 mouse_genomes_project 14 51254058 51309032 - MGP_C3HHeJ_P0039381 Pspc1 protein_coding protein_coding MGP_C3HHeJ_T0039382.1 MGP_C3HHeJ_G0021140.1 mouse_genomes_project 14 51278886 51292219 - Pspc1 protein_coding retained_intron MGP_C3HHeJ_T0039383.1 MGP_C3HHeJ_G0021140.1 mouse_genomes_project 14 51279209 51308643 - MGP_C3HHeJ_P0039383 Pspc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006605.1 MGP_C3HHeJ_G0005456.1 mouse_genomes_project 14 40621582 40625029 - Gm10101 lincRNA lincRNA MGP_C3HHeJ_T0006606.1 MGP_C3HHeJ_G0005456.1 mouse_genomes_project 14 40621587 40625029 - Gm10101 lincRNA lincRNA MGP_C3HHeJ_T0012858.1 MGP_C3HHeJ_G0010962.1 mouse_genomes_project 14 22380765 22381257 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101133.1 MGP_C3HHeJ_G0039300.1 mouse_genomes_project 14 42099943 42131615 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101134.1 MGP_C3HHeJ_G0039300.1 mouse_genomes_project 14 42128645 42131408 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0038760.1 MGP_C3HHeJ_G0020949.1 mouse_genomes_project 14 40599535 40613386 - MGP_C3HHeJ_P0038760 Gmfb protein_coding protein_coding MGP_C3HHeJ_T0038761.1 MGP_C3HHeJ_G0020949.1 mouse_genomes_project 14 40599535 40613386 - MGP_C3HHeJ_P0038761 Gmfb protein_coding protein_coding MGP_C3HHeJ_T0038762.1 MGP_C3HHeJ_G0020949.1 mouse_genomes_project 14 40605659 40610968 - MGP_C3HHeJ_P0038762 Gmfb protein_coding protein_coding MGP_C3HHeJ_T0012839.1 MGP_C3HHeJ_G0010943.1 mouse_genomes_project 14 2232461 2233065 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017162.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56351701 56439590 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017163.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56351896 56439531 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017164.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56352334 56439519 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017165.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56352451 56405214 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017166.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56352586 56405179 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017167.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56372784 56374336 - Dleu2 processed_transcript TEC MGP_C3HHeJ_T0017168.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56374057 56439542 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017169.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56379766 56405154 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017170.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56382379 56386748 - Dleu2 processed_transcript TEC MGP_C3HHeJ_T0017171.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56383175 56439542 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017172.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56387154 56405014 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017173.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56387204 56405214 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017174.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56390067 56439531 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017175.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56398006 56439530 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0017176.1 MGP_C3HHeJ_G0015032.1 mouse_genomes_project 14 56398080 56439542 - Dleu2 processed_transcript lincRNA MGP_C3HHeJ_T0040139.1 MGP_C3HHeJ_G0021422.1 mouse_genomes_project 14 120877653 121624901 - MGP_C3HHeJ_P0040139 Fgf14 protein_coding protein_coding MGP_C3HHeJ_T0040140.1 MGP_C3HHeJ_G0021422.1 mouse_genomes_project 14 120878037 121112684 - MGP_C3HHeJ_P0040140 Fgf14 protein_coding protein_coding MGP_C3HHeJ_T0002477.1 MGP_C3HHeJ_G0002390.1 mouse_genomes_project 14 48579611 48579672 + MGP_C3HHeJ_P0002477 Traj48 TR_J_gene TR_J_gene MGP_C3HHeJ_T0002478.1 MGP_C3HHeJ_G0002390.1 mouse_genomes_project 14 48579612 48579672 + Traj48 TR_J_gene processed_transcript MGP_C3HHeJ_T0038797.1 MGP_C3HHeJ_G0020958.1 mouse_genomes_project 14 41405892 41435389 - MGP_C3HHeJ_P0038797 Atg14 protein_coding protein_coding MGP_C3HHeJ_T0002484.1 MGP_C3HHeJ_G0002396.1 mouse_genomes_project 14 48585568 48585632 + MGP_C3HHeJ_P0002484 Traj42 TR_J_gene TR_J_gene MGP_C3HHeJ_T0009925.1 MGP_C3HHeJ_G0008058.1 mouse_genomes_project 14 92854758 92854863 - Gm27441 miRNA miRNA MGP_C3HHeJ_T0002661.1 MGP_C3HHeJ_G0002543.1 mouse_genomes_project 14 48263098 48263650 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0038360.1 MGP_C3HHeJ_G0020834.1 mouse_genomes_project 14 23161530 23180243 + MGP_C3HHeJ_P0038360 Actr8 protein_coding protein_coding MGP_C3HHeJ_T0002469.1 MGP_C3HHeJ_G0002384.1 mouse_genomes_project 14 48567310 48567375 + Traj57 TR_J_gene processed_transcript MGP_C3HHeJ_T0002470.1 MGP_C3HHeJ_G0002384.1 mouse_genomes_project 14 48567312 48567375 + MGP_C3HHeJ_P0002470 Traj57 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038361.1 MGP_C3HHeJ_G0020835.1 mouse_genomes_project 14 23183162 23195832 - MGP_C3HHeJ_P0038361 Il17rb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038362.1 MGP_C3HHeJ_G0020835.1 mouse_genomes_project 14 23183189 23195915 - MGP_C3HHeJ_P0038362 Il17rb protein_coding protein_coding MGP_C3HHeJ_T0038363.1 MGP_C3HHeJ_G0020835.1 mouse_genomes_project 14 23183189 23195915 - MGP_C3HHeJ_P0038363 Il17rb protein_coding protein_coding MGP_C3HHeJ_T0038364.1 MGP_C3HHeJ_G0020835.1 mouse_genomes_project 14 23183220 23195828 - MGP_C3HHeJ_P0038364 Il17rb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038365.1 MGP_C3HHeJ_G0020835.1 mouse_genomes_project 14 23183645 23195810 - MGP_C3HHeJ_P0038365 Il17rb protein_coding unknown_likely_coding MGP_C3HHeJ_T0012885.1 MGP_C3HHeJ_G0010989.1 mouse_genomes_project 14 54102148 54102443 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037977.1 MGP_C3HHeJ_G0020720.1 mouse_genomes_project 14 280030 309894 - MGP_C3HHeJ_P0037977 Dnase1l3 protein_coding protein_coding MGP_C3HHeJ_T0037978.1 MGP_C3HHeJ_G0020720.1 mouse_genomes_project 14 291343 292674 - Dnase1l3 protein_coding processed_transcript MGP_C3HHeJ_T0039284.1 MGP_C3HHeJ_G0021098.1 mouse_genomes_project 14 50082632 50089098 + MGP_C3HHeJ_P0039284 Irf9 protein_coding protein_coding MGP_C3HHeJ_T0039285.1 MGP_C3HHeJ_G0021098.1 mouse_genomes_project 14 50083046 50089098 + MGP_C3HHeJ_P0039285 Irf9 protein_coding protein_coding MGP_C3HHeJ_T0039286.1 MGP_C3HHeJ_G0021098.1 mouse_genomes_project 14 50083638 50084924 + Irf9 protein_coding retained_intron MGP_C3HHeJ_T0039287.1 MGP_C3HHeJ_G0021098.1 mouse_genomes_project 14 50083640 50089098 + MGP_C3HHeJ_P0039287 Irf9 protein_coding protein_coding MGP_C3HHeJ_T0039288.1 MGP_C3HHeJ_G0021098.1 mouse_genomes_project 14 50084883 50089095 + Irf9 protein_coding retained_intron MGP_C3HHeJ_T0039289.1 MGP_C3HHeJ_G0021098.1 mouse_genomes_project 14 50086342 50087801 + Irf9 protein_coding retained_intron MGP_C3HHeJ_T0039520.1 MGP_C3HHeJ_G0021190.1 mouse_genomes_project 14 57463665 57493384 + MGP_C3HHeJ_P0039520 Serpine3 protein_coding protein_coding MGP_C3HHeJ_T0100189.1 MGP_C3HHeJ_G0038383.1 mouse_genomes_project 14 46320315 46320385 + Gm22354 snoRNA snoRNA MGP_C3HHeJ_T0039757.1 MGP_C3HHeJ_G0021285.1 mouse_genomes_project 14 65450142 65452650 + Hr protein_coding processed_transcript MGP_C3HHeJ_T0039758.1 MGP_C3HHeJ_G0021285.1 mouse_genomes_project 14 65450175 65452596 + Hr protein_coding processed_transcript MGP_C3HHeJ_T0039759.1 MGP_C3HHeJ_G0021285.1 mouse_genomes_project 14 65451617 65470235 + MGP_C3HHeJ_P0039759 Hr protein_coding protein_coding MGP_C3HHeJ_T0039760.1 MGP_C3HHeJ_G0021285.1 mouse_genomes_project 14 65451986 65470883 + MGP_C3HHeJ_P0039760 Hr protein_coding protein_coding MGP_C3HHeJ_T0039761.1 MGP_C3HHeJ_G0021285.1 mouse_genomes_project 14 65453830 65470879 + MGP_C3HHeJ_P0039761 Hr protein_coding protein_coding MGP_C3HHeJ_T0101738.1 MGP_C3HHeJ_G0039703.1 mouse_genomes_project 14 45185633 45186068 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017183.1 MGP_C3HHeJ_G0015037.1 mouse_genomes_project 14 62462832 62473387 - Gm10860 processed_transcript processed_transcript MGP_C3HHeJ_T0012881.1 MGP_C3HHeJ_G0010985.1 mouse_genomes_project 14 50763426 50764435 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101734.1 MGP_C3HHeJ_G0039699.1 mouse_genomes_project 14 18922106 18931497 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0040092.1 MGP_C3HHeJ_G0021407.1 mouse_genomes_project 14 118357358 118521855 - MGP_C3HHeJ_P0040092 Dock9 protein_coding protein_coding MGP_C3HHeJ_T0040093.1 MGP_C3HHeJ_G0021407.1 mouse_genomes_project 14 118357358 118626544 - MGP_C3HHeJ_P0040093 Dock9 protein_coding protein_coding MGP_C3HHeJ_T0040094.1 MGP_C3HHeJ_G0021407.1 mouse_genomes_project 14 118358822 118410522 - MGP_C3HHeJ_P0040094 Dock9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040095.1 MGP_C3HHeJ_G0021407.1 mouse_genomes_project 14 118413023 118566226 - MGP_C3HHeJ_P0040095 Dock9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039343.1 MGP_C3HHeJ_G0021114.1 mouse_genomes_project 14 50263595 50278576 - MGP_C3HHeJ_P0039343 Adcy4 protein_coding protein_coding MGP_C3HHeJ_T0039344.1 MGP_C3HHeJ_G0021114.1 mouse_genomes_project 14 50263630 50278553 - MGP_C3HHeJ_P0039344 Adcy4 protein_coding protein_coding MGP_C3HHeJ_T0040038.1 MGP_C3HHeJ_G0021382.1 mouse_genomes_project 14 102210965 102214040 + MGP_C3HHeJ_P0040038 Trim52 protein_coding protein_coding MGP_C3HHeJ_T0040039.1 MGP_C3HHeJ_G0021382.1 mouse_genomes_project 14 102210966 102234284 + Trim52 protein_coding processed_transcript MGP_C3HHeJ_T0098043.1 MGP_C3HHeJ_G0036255.1 mouse_genomes_project 14 83553032 83553132 + Gm26405 rRNA rRNA MGP_C3HHeJ_T0038264.1 MGP_C3HHeJ_G0020803.1 mouse_genomes_project 14 18746241 18807622 - MGP_C3HHeJ_P0038264 Zcchc24 protein_coding protein_coding MGP_C3HHeJ_T0038265.1 MGP_C3HHeJ_G0020803.1 mouse_genomes_project 14 18746243 18754396 - Zcchc24 protein_coding retained_intron MGP_C3HHeJ_T0098937.1 MGP_C3HHeJ_G0037131.1 mouse_genomes_project 14 52451357 52451504 - Gm22738 snRNA snRNA MGP_C3HHeJ_T0039867.1 MGP_C3HHeJ_G0021321.1 mouse_genomes_project 14 71170352 71197501 + MGP_C3HHeJ_P0039867 Nufip1 protein_coding protein_coding MGP_C3HHeJ_T0038693.1 MGP_C3HHeJ_G0020924.1 mouse_genomes_project 14 30579066 30592959 - MGP_C3HHeJ_P0038693 Ghitm protein_coding unknown_likely_coding MGP_C3HHeJ_T0038430.1 MGP_C3HHeJ_G0020850.1 mouse_genomes_project 14 24232014 24248258 + MGP_C3HHeJ_P0038430 Glt8d1 protein_coding protein_coding MGP_C3HHeJ_T0038431.1 MGP_C3HHeJ_G0020850.1 mouse_genomes_project 14 24232054 24248258 + MGP_C3HHeJ_P0038431 Glt8d1 protein_coding protein_coding MGP_C3HHeJ_T0040135.1 MGP_C3HHeJ_G0021420.1 mouse_genomes_project 14 120183712 120527016 - MGP_C3HHeJ_P0040135 Nalcn protein_coding protein_coding MGP_C3HHeJ_T0017210.1 MGP_C3HHeJ_G0015049.1 mouse_genomes_project 14 119344361 119347622 - 2610035F20Rik processed_transcript retained_intron MGP_C3HHeJ_T0017211.1 MGP_C3HHeJ_G0015049.1 mouse_genomes_project 14 119344454 119349242 - 2610035F20Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100218.1 MGP_C3HHeJ_G0038412.1 mouse_genomes_project 14 94062764 94062845 - Gm26006 snoRNA snoRNA MGP_C3HHeJ_T0009903.1 MGP_C3HHeJ_G0008036.1 mouse_genomes_project 14 49434696 49434773 - Mir208b miRNA miRNA MGP_C3HHeJ_T0038356.1 MGP_C3HHeJ_G0020831.1 mouse_genomes_project 14 22064666 22895839 - MGP_C3HHeJ_P0038356 Cacna2d3 protein_coding protein_coding MGP_C3HHeJ_T0000878.1 MGP_C3HHeJ_G0000818.1 mouse_genomes_project 14 45037940 45039389 - TEC TEC MGP_C3HHeJ_T0006646.1 MGP_C3HHeJ_G0005485.1 mouse_genomes_project 14 102512610 102590595 - 1700128A07Rik lincRNA lincRNA MGP_C3HHeJ_T0006647.1 MGP_C3HHeJ_G0005485.1 mouse_genomes_project 14 102535101 102590567 - 1700128A07Rik lincRNA lincRNA MGP_C3HHeJ_T0101732.1 MGP_C3HHeJ_G0039697.1 mouse_genomes_project 14 12534904 12539312 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039367.1 MGP_C3HHeJ_G0021133.1 mouse_genomes_project 14 50745167 50749552 - MGP_C3HHeJ_P0039367 Gzmc protein_coding protein_coding MGP_C3HHeJ_T0098933.1 MGP_C3HHeJ_G0037127.1 mouse_genomes_project 14 49007140 49007248 + Gm24705 snRNA snRNA MGP_C3HHeJ_T0003481.1 MGP_C3HHeJ_G0003166.1 mouse_genomes_project 14 49432348 49432679 + Gm29015 antisense antisense MGP_C3HHeJ_T0006595.1 MGP_C3HHeJ_G0005447.1 mouse_genomes_project 14 25759999 25778757 + Gm2990 lincRNA lincRNA MGP_C3HHeJ_T0039290.1 MGP_C3HHeJ_G0021099.1 mouse_genomes_project 14 50098087 50106360 + MGP_C3HHeJ_P0039290 Rec8 protein_coding protein_coding MGP_C3HHeJ_T0039291.1 MGP_C3HHeJ_G0021099.1 mouse_genomes_project 14 50098233 50098867 + Rec8 protein_coding retained_intron MGP_C3HHeJ_T0039292.1 MGP_C3HHeJ_G0021099.1 mouse_genomes_project 14 50104533 50105475 + Rec8 protein_coding retained_intron MGP_C3HHeJ_T0039293.1 MGP_C3HHeJ_G0021099.1 mouse_genomes_project 14 50105883 50106360 + Rec8 protein_coding retained_intron MGP_C3HHeJ_T0038293.1 MGP_C3HHeJ_G0020813.1 mouse_genomes_project 14 19327373 19332027 + protein_coding processed_transcript MGP_C3HHeJ_T0038298.1 MGP_C3HHeJ_G0020813.1 mouse_genomes_project 14 19329169 19336049 + protein_coding processed_transcript MGP_C3HHeJ_T0038300.1 MGP_C3HHeJ_G0020813.1 mouse_genomes_project 14 19331524 19338679 + MGP_C3HHeJ_P0038300 protein_coding protein_coding MGP_C3HHeJ_T0040053.1 MGP_C3HHeJ_G0021390.1 mouse_genomes_project 14 114761896 114784474 - MGP_C3HHeJ_P0040053 Tgds protein_coding protein_coding MGP_C3HHeJ_T0012875.1 MGP_C3HHeJ_G0010979.1 mouse_genomes_project 14 46677761 46678046 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038633.1 MGP_C3HHeJ_G0020898.1 mouse_genomes_project 14 27400765 27406657 + MGP_C3HHeJ_P0038633 Gm5460 protein_coding protein_coding MGP_C3HHeJ_T0002596.1 MGP_C3HHeJ_G0002492.1 mouse_genomes_project 14 48243191 48243785 + MGP_C3HHeJ_P0002596 Trav19 TR_V_gene TR_V_gene MGP_C3HHeJ_T0000874.1 MGP_C3HHeJ_G0000814.1 mouse_genomes_project 14 14883573 14903840 + TEC TEC MGP_C3HHeJ_T0040136.1 MGP_C3HHeJ_G0021421.1 mouse_genomes_project 14 120563672 120875365 + MGP_C3HHeJ_P0040136 Itgbl1 protein_coding protein_coding MGP_C3HHeJ_T0040137.1 MGP_C3HHeJ_G0021421.1 mouse_genomes_project 14 120563826 120874803 + MGP_C3HHeJ_P0040137 Itgbl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040138.1 MGP_C3HHeJ_G0021421.1 mouse_genomes_project 14 120565125 120875365 + MGP_C3HHeJ_P0040138 Itgbl1 protein_coding protein_coding MGP_C3HHeJ_T0037986.1 MGP_C3HHeJ_G0020725.1 mouse_genomes_project 14 544603 554057 + MGP_C3HHeJ_P0037986 Kctd6 protein_coding protein_coding MGP_C3HHeJ_T0037987.1 MGP_C3HHeJ_G0020725.1 mouse_genomes_project 14 544957 554051 + MGP_C3HHeJ_P0037987 Kctd6 protein_coding protein_coding MGP_C3HHeJ_T0017184.1 MGP_C3HHeJ_G0015038.1 mouse_genomes_project 14 68104887 68118399 - Gm17233 processed_transcript processed_transcript MGP_C3HHeJ_T0002497.1 MGP_C3HHeJ_G0002409.1 mouse_genomes_project 14 48601489 48601554 + MGP_C3HHeJ_P0002497 Traj28 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039764.1 MGP_C3HHeJ_G0021288.1 mouse_genomes_project 14 65500090 65531496 - MGP_C3HHeJ_P0039764 Dmtn protein_coding protein_coding MGP_C3HHeJ_T0039765.1 MGP_C3HHeJ_G0021288.1 mouse_genomes_project 14 65500091 65528407 - MGP_C3HHeJ_P0039765 Dmtn protein_coding protein_coding MGP_C3HHeJ_T0039766.1 MGP_C3HHeJ_G0021288.1 mouse_genomes_project 14 65502647 65530337 - MGP_C3HHeJ_P0039766 Dmtn protein_coding unknown_likely_coding MGP_C3HHeJ_T0039637.1 MGP_C3HHeJ_G0021238.1 mouse_genomes_project 14 61622147 61725476 + MGP_C3HHeJ_P0039637 Adra1a protein_coding protein_coding MGP_C3HHeJ_T0039638.1 MGP_C3HHeJ_G0021238.1 mouse_genomes_project 14 61622154 61725340 + MGP_C3HHeJ_P0039638 Adra1a protein_coding protein_coding MGP_C3HHeJ_T0039639.1 MGP_C3HHeJ_G0021238.1 mouse_genomes_project 14 61622205 61628248 + Adra1a protein_coding retained_intron MGP_C3HHeJ_T0039640.1 MGP_C3HHeJ_G0021238.1 mouse_genomes_project 14 61622237 61721996 + MGP_C3HHeJ_P0039640 Adra1a protein_coding protein_coding MGP_C3HHeJ_T0039641.1 MGP_C3HHeJ_G0021238.1 mouse_genomes_project 14 61622452 61724752 + MGP_C3HHeJ_P0039641 Adra1a protein_coding protein_coding MGP_C3HHeJ_T0038994.1 MGP_C3HHeJ_G0021029.1 mouse_genomes_project 14 46262340 46269779 + MGP_C3HHeJ_P0038994 Tmem253 protein_coding protein_coding MGP_C3HHeJ_T0038348.1 MGP_C3HHeJ_G0020829.1 mouse_genomes_project 14 20754320 21626343 + MGP_C3HHeJ_P0038348 Erc2 protein_coding protein_coding MGP_C3HHeJ_T0038349.1 MGP_C3HHeJ_G0020829.1 mouse_genomes_project 14 20772653 21456915 + MGP_C3HHeJ_P0038349 Erc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038350.1 MGP_C3HHeJ_G0020829.1 mouse_genomes_project 14 20910888 21456915 + MGP_C3HHeJ_P0038350 Erc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002536.1 MGP_C3HHeJ_G0002446.1 mouse_genomes_project 14 48563715 48563786 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0039172.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49348102 49352788 + MGP_C3HHeJ_P0039172 Pabpn1 protein_coding protein_coding MGP_C3HHeJ_T0039173.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49349752 49353776 + MGP_C3HHeJ_P0039173 Pabpn1 protein_coding protein_coding MGP_C3HHeJ_T0039174.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49349759 49353703 + MGP_C3HHeJ_P0039174 Pabpn1 protein_coding protein_coding MGP_C3HHeJ_T0039175.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49349760 49353663 + MGP_C3HHeJ_P0039175 Pabpn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039176.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49349760 49354536 + MGP_C3HHeJ_P0039176 Pabpn1 protein_coding protein_coding MGP_C3HHeJ_T0039177.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49350222 49353741 + MGP_C3HHeJ_P0039177 Pabpn1 protein_coding protein_coding MGP_C3HHeJ_T0039178.1 MGP_C3HHeJ_G0021072.1 mouse_genomes_project 14 49350437 49351496 + MGP_C3HHeJ_P0039178 Pabpn1 protein_coding protein_coding MGP_C3HHeJ_T0040085.1 MGP_C3HHeJ_G0021403.1 mouse_genomes_project 14 117687100 117724245 + MGP_C3HHeJ_P0040085 Ipo5 protein_coding protein_coding MGP_C3HHeJ_T0098947.1 MGP_C3HHeJ_G0037141.1 mouse_genomes_project 14 84926610 84926726 + Gm25886 snRNA snRNA MGP_C3HHeJ_T0098941.1 MGP_C3HHeJ_G0037135.1 mouse_genomes_project 14 67065655 67065789 + Gm23735 snRNA snRNA MGP_C3HHeJ_T0039181.1 MGP_C3HHeJ_G0021075.1 mouse_genomes_project 14 49389087 49392229 + MGP_C3HHeJ_P0039181 Il25 protein_coding protein_coding MGP_C3HHeJ_T0039750.1 MGP_C3HHeJ_G0021280.1 mouse_genomes_project 14 65352991 65364316 + MGP_C3HHeJ_P0039750 Phyhip protein_coding protein_coding MGP_C3HHeJ_T0039751.1 MGP_C3HHeJ_G0021280.1 mouse_genomes_project 14 65354038 65358814 + MGP_C3HHeJ_P0039751 Phyhip protein_coding protein_coding MGP_C3HHeJ_T0040000.1 MGP_C3HHeJ_G0021370.1 mouse_genomes_project 14 99048071 99055435 + MGP_C3HHeJ_P0040000 Cln5 protein_coding protein_coding MGP_C3HHeJ_T0006585.1 MGP_C3HHeJ_G0005442.1 mouse_genomes_project 14 18580577 18586527 - Gm26772 lincRNA lincRNA MGP_C3HHeJ_T0039320.1 MGP_C3HHeJ_G0021102.1 mouse_genomes_project 14 50131156 50133514 + MGP_C3HHeJ_P0039320 Tssk4 protein_coding protein_coding MGP_C3HHeJ_T0039321.1 MGP_C3HHeJ_G0021102.1 mouse_genomes_project 14 50131158 50133514 + MGP_C3HHeJ_P0039321 Tssk4 protein_coding protein_coding MGP_C3HHeJ_T0039322.1 MGP_C3HHeJ_G0021102.1 mouse_genomes_project 14 50131323 50133423 + MGP_C3HHeJ_P0039322 Tssk4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037975.1 MGP_C3HHeJ_G0020719.1 mouse_genomes_project 14 123375 266904 + MGP_C3HHeJ_P0037975 Flnb protein_coding protein_coding MGP_C3HHeJ_T0037976.1 MGP_C3HHeJ_G0020719.1 mouse_genomes_project 14 123570 251632 + MGP_C3HHeJ_P0037976 Flnb protein_coding unknown_likely_coding MGP_C3HHeJ_T0012887.1 MGP_C3HHeJ_G0010991.1 mouse_genomes_project 14 54874481 54874686 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038002.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 1886164 2807120 - MGP_C3HHeJ_P0038002 Fhit protein_coding protein_coding MGP_C3HHeJ_T0038003.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 1886172 3547368 - MGP_C3HHeJ_P0038003 Fhit protein_coding protein_coding MGP_C3HHeJ_T0038004.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 1886172 3547365 - MGP_C3HHeJ_P0038004 Fhit protein_coding protein_coding MGP_C3HHeJ_T0038005.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 1886465 2218798 - MGP_C3HHeJ_P0038005 Fhit protein_coding unknown_likely_coding MGP_C3HHeJ_T0038006.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 1886465 2775295 - MGP_C3HHeJ_P0038006 Fhit protein_coding protein_coding MGP_C3HHeJ_T0038007.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 1910674 3508851 - MGP_C3HHeJ_P0038007 Fhit protein_coding protein_coding MGP_C3HHeJ_T0038008.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 2105755 3508438 - Fhit protein_coding retained_intron MGP_C3HHeJ_T0038009.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 2105862 3508822 - MGP_C3HHeJ_P0038009 Fhit protein_coding protein_coding MGP_C3HHeJ_T0038010.1 MGP_C3HHeJ_G0020730.1 mouse_genomes_project 14 2216542 3547368 - MGP_C3HHeJ_P0038010 Fhit protein_coding protein_coding MGP_C3HHeJ_T0101740.1 MGP_C3HHeJ_G0039705.1 mouse_genomes_project 14 45256248 45256711 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0038825.1 MGP_C3HHeJ_G0020961.1 mouse_genomes_project 14 42355731 42424200 + MGP_C3HHeJ_P0038825 Tmem260 protein_coding protein_coding MGP_C3HHeJ_T0038826.1 MGP_C3HHeJ_G0020961.1 mouse_genomes_project 14 42355955 42412945 + Tmem260 protein_coding retained_intron MGP_C3HHeJ_T0038827.1 MGP_C3HHeJ_G0020961.1 mouse_genomes_project 14 42355985 42426543 + MGP_C3HHeJ_P0038827 Tmem260 protein_coding protein_coding MGP_C3HHeJ_T0038828.1 MGP_C3HHeJ_G0020961.1 mouse_genomes_project 14 42355996 42423545 + MGP_C3HHeJ_P0038828 Tmem260 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038829.1 MGP_C3HHeJ_G0020961.1 mouse_genomes_project 14 42356001 42419788 + Tmem260 protein_coding retained_intron MGP_C3HHeJ_T0038838.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42958763 43012319 - MGP_C3HHeJ_P0038838 Exoc5 protein_coding protein_coding MGP_C3HHeJ_T0038839.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42960405 43012062 - MGP_C3HHeJ_P0038839 Exoc5 protein_coding protein_coding MGP_C3HHeJ_T0038840.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42962123 42966445 - Exoc5 protein_coding retained_intron MGP_C3HHeJ_T0038841.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42963405 42969922 - MGP_C3HHeJ_P0038841 Exoc5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038842.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42964111 42970186 - Exoc5 protein_coding retained_intron MGP_C3HHeJ_T0038843.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42976231 42982052 - Exoc5 protein_coding retained_intron MGP_C3HHeJ_T0038844.1 MGP_C3HHeJ_G0020963.1 mouse_genomes_project 14 42981504 42994579 - MGP_C3HHeJ_P0038844 Exoc5 protein_coding protein_coding MGP_C3HHeJ_T0038830.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42581938 42589553 - MGP_C3HHeJ_P0038830 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038831.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42582429 42591816 - MGP_C3HHeJ_P0038831 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038832.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42582429 42587149 - MGP_C3HHeJ_P0038832 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038833.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42583175 42586209 - MGP_C3HHeJ_P0038833 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038834.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42583212 42591947 - MGP_C3HHeJ_P0038834 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038835.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42583564 42591811 - MGP_C3HHeJ_P0038835 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038836.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42585626 42591811 - MGP_C3HHeJ_P0038836 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0038837.1 MGP_C3HHeJ_G0020962.1 mouse_genomes_project 14 42585676 42589828 - MGP_C3HHeJ_P0038837 Otx2 protein_coding protein_coding MGP_C3HHeJ_T0039965.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97366837 97547385 - MGP_C3HHeJ_P0039965 Tbc1d4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039966.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97366839 97548117 - MGP_C3HHeJ_P0039966 Tbc1d4 protein_coding protein_coding MGP_C3HHeJ_T0039967.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97366847 97391421 - Tbc1d4 protein_coding retained_intron MGP_C3HHeJ_T0039968.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97366847 97437920 - MGP_C3HHeJ_P0039968 Tbc1d4 protein_coding protein_coding MGP_C3HHeJ_T0039969.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97368202 97547570 - MGP_C3HHeJ_P0039969 Tbc1d4 protein_coding protein_coding MGP_C3HHeJ_T0039970.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97390769 97547916 - Tbc1d4 protein_coding retained_intron MGP_C3HHeJ_T0039971.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97390991 97547751 - Tbc1d4 protein_coding retained_intron MGP_C3HHeJ_T0039972.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97390991 97547751 - Tbc1d4 protein_coding retained_intron MGP_C3HHeJ_T0039973.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97391160 97430945 - MGP_C3HHeJ_P0039973 Tbc1d4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039974.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97391171 97548275 - MGP_C3HHeJ_P0039974 Tbc1d4 protein_coding protein_coding MGP_C3HHeJ_T0039975.1 MGP_C3HHeJ_G0021363.1 mouse_genomes_project 14 97435300 97437864 - Tbc1d4 protein_coding retained_intron MGP_C3HHeJ_T0006615.1 MGP_C3HHeJ_G0005461.1 mouse_genomes_project 14 46232900 46235377 - Gm16617 lincRNA lincRNA MGP_C3HHeJ_T0002508.1 MGP_C3HHeJ_G0002420.1 mouse_genomes_project 14 48611805 48611868 + MGP_C3HHeJ_P0002508 Traj17 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039615.1 MGP_C3HHeJ_G0021232.1 mouse_genomes_project 14 60989312 61043589 - MGP_C3HHeJ_P0039615 Adam2 protein_coding protein_coding MGP_C3HHeJ_T0098913.1 MGP_C3HHeJ_G0037107.1 mouse_genomes_project 14 6431335 6431432 + Gm25964 snRNA snRNA MGP_C3HHeJ_T0098572.1 MGP_C3HHeJ_G0036770.1 mouse_genomes_project 14 62724654 62726592 - Gm20667 sense_overlapping sense_overlapping MGP_C3HHeJ_T0039355.1 MGP_C3HHeJ_G0021121.1 mouse_genomes_project 14 50446211 50449899 - MGP_C3HHeJ_P0039355 Cma1 protein_coding protein_coding MGP_C3HHeJ_T0040020.1 MGP_C3HHeJ_G0021375.1 mouse_genomes_project 14 99816947 99849850 - MGP_C3HHeJ_P0040020 Ednrb protein_coding protein_coding MGP_C3HHeJ_T0040021.1 MGP_C3HHeJ_G0021375.1 mouse_genomes_project 14 99816948 99849373 - MGP_C3HHeJ_P0040021 Ednrb protein_coding protein_coding MGP_C3HHeJ_T0006581.1 MGP_C3HHeJ_G0005439.1 mouse_genomes_project 14 17684381 17685104 + 4930428N03Rik lincRNA lincRNA MGP_C3HHeJ_T0006582.1 MGP_C3HHeJ_G0005439.1 mouse_genomes_project 14 17684402 17691582 + 4930428N03Rik lincRNA lincRNA MGP_C3HHeJ_T0017208.1 MGP_C3HHeJ_G0015048.1 mouse_genomes_project 14 118952460 118957885 - A330035P11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017209.1 MGP_C3HHeJ_G0015048.1 mouse_genomes_project 14 118955267 118957906 - A330035P11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0039037.1 MGP_C3HHeJ_G0021036.1 mouse_genomes_project 14 46534598 46550582 + MGP_C3HHeJ_P0039037 Tox4 protein_coding protein_coding MGP_C3HHeJ_T0039038.1 MGP_C3HHeJ_G0021036.1 mouse_genomes_project 14 46535017 46546536 + Tox4 protein_coding retained_intron MGP_C3HHeJ_T0039039.1 MGP_C3HHeJ_G0021036.1 mouse_genomes_project 14 46535069 46535565 + Tox4 protein_coding retained_intron MGP_C3HHeJ_T0039040.1 MGP_C3HHeJ_G0021036.1 mouse_genomes_project 14 46535184 46542432 + Tox4 protein_coding retained_intron MGP_C3HHeJ_T0039041.1 MGP_C3HHeJ_G0021036.1 mouse_genomes_project 14 46540815 46542052 + Tox4 protein_coding processed_transcript MGP_C3HHeJ_T0038897.1 MGP_C3HHeJ_G0021000.1 mouse_genomes_project 14 44970514 44972029 - MGP_C3HHeJ_P0038897 A930018M24Rik protein_coding protein_coding MGP_C3HHeJ_T0002542.1 MGP_C3HHeJ_G0002452.1 mouse_genomes_project 14 48615149 48615183 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0100186.1 MGP_C3HHeJ_G0038380.1 mouse_genomes_project 14 30065166 30065289 + Gm24394 snoRNA snoRNA MGP_C3HHeJ_T0039536.1 MGP_C3HHeJ_G0021198.1 mouse_genomes_project 14 57941709 57965126 + MGP_C3HHeJ_P0039536 Ctsb protein_coding protein_coding MGP_C3HHeJ_T0038119.1 MGP_C3HHeJ_G0020770.1 mouse_genomes_project 14 13303323 13305972 - MGP_C3HHeJ_P0038119 Mrps16 protein_coding protein_coding MGP_C3HHeJ_T0038713.1 MGP_C3HHeJ_G0020932.1 mouse_genomes_project 14 34743898 34746593 + MGP_C3HHeJ_P0038713 Sftpa1 protein_coding protein_coding MGP_C3HHeJ_T0038714.1 MGP_C3HHeJ_G0020932.1 mouse_genomes_project 14 34743904 34748569 + MGP_C3HHeJ_P0038714 Sftpa1 protein_coding protein_coding MGP_C3HHeJ_T0006638.1 MGP_C3HHeJ_G0005478.1 mouse_genomes_project 14 65083366 65096426 + Gm26908 lincRNA lincRNA MGP_C3HHeJ_T0002654.1 MGP_C3HHeJ_G0002536.1 mouse_genomes_project 14 47184908 47185177 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0037988.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 555956 589053 - MGP_C3HHeJ_P0037988 Acox2 protein_coding protein_coding MGP_C3HHeJ_T0037989.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 555956 589574 - MGP_C3HHeJ_P0037989 Acox2 protein_coding protein_coding MGP_C3HHeJ_T0037990.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 569692 576610 - Acox2 protein_coding processed_transcript MGP_C3HHeJ_T0037991.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 573809 576637 - Acox2 protein_coding retained_intron MGP_C3HHeJ_T0037992.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 578082 583750 - Acox2 protein_coding retained_intron MGP_C3HHeJ_T0037993.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 583769 588092 - MGP_C3HHeJ_P0037993 Acox2 protein_coding protein_coding MGP_C3HHeJ_T0037994.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 585414 588375 - Acox2 protein_coding processed_transcript MGP_C3HHeJ_T0037995.1 MGP_C3HHeJ_G0020726.1 mouse_genomes_project 14 586143 587155 - Acox2 protein_coding retained_intron MGP_C3HHeJ_T0101135.1 MGP_C3HHeJ_G0039301.1 mouse_genomes_project 14 49497488 49501921 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101136.1 MGP_C3HHeJ_G0039301.1 mouse_genomes_project 14 49500765 49501744 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0002485.1 MGP_C3HHeJ_G0002397.1 mouse_genomes_project 14 48586066 48586121 + MGP_C3HHeJ_P0002485 Traj41 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038940.1 MGP_C3HHeJ_G0021020.1 mouse_genomes_project 14 45984404 45991119 - MGP_C3HHeJ_P0038940 Ang4 protein_coding protein_coding MGP_C3HHeJ_T0038782.1 MGP_C3HHeJ_G0020955.1 mouse_genomes_project 14 41131808 41160003 + MGP_C3HHeJ_P0038782 protein_coding protein_coding MGP_C3HHeJ_T0038783.1 MGP_C3HHeJ_G0020955.1 mouse_genomes_project 14 41143212 41160004 + MGP_C3HHeJ_P0038783 protein_coding protein_coding MGP_C3HHeJ_T0039064.1 MGP_C3HHeJ_G0021043.1 mouse_genomes_project 14 46713237 46721419 + MGP_C3HHeJ_P0039064 Olfr1509 protein_coding protein_coding MGP_C3HHeJ_T0039065.1 MGP_C3HHeJ_G0021043.1 mouse_genomes_project 14 46713238 46720808 + MGP_C3HHeJ_P0039065 Olfr1509 protein_coding protein_coding MGP_C3HHeJ_T0039066.1 MGP_C3HHeJ_G0021043.1 mouse_genomes_project 14 46713273 46720642 + MGP_C3HHeJ_P0039066 Olfr1509 protein_coding protein_coding MGP_C3HHeJ_T0039067.1 MGP_C3HHeJ_G0021043.1 mouse_genomes_project 14 46719364 46720901 + MGP_C3HHeJ_P0039067 Olfr1509 protein_coding protein_coding MGP_C3HHeJ_T0039068.1 MGP_C3HHeJ_G0021043.1 mouse_genomes_project 14 46720409 46721419 + MGP_C3HHeJ_P0039068 Olfr1509 protein_coding protein_coding MGP_C3HHeJ_T0012859.1 MGP_C3HHeJ_G0010963.1 mouse_genomes_project 14 24026610 24027386 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006597.1 MGP_C3HHeJ_G0005449.1 mouse_genomes_project 14 28176632 28183456 + A930038B10Rik lincRNA lincRNA MGP_C3HHeJ_T0006598.1 MGP_C3HHeJ_G0005449.1 mouse_genomes_project 14 28177457 28188971 + A930038B10Rik lincRNA lincRNA MGP_C3HHeJ_T0039915.1 MGP_C3HHeJ_G0021339.1 mouse_genomes_project 14 74593246 74597221 + MGP_C3HHeJ_P0039915 Kbtbd7 protein_coding protein_coding MGP_C3HHeJ_T0040001.1 MGP_C3HHeJ_G0021371.1 mouse_genomes_project 14 99058094 99079194 - MGP_C3HHeJ_P0040001 Fbxl3 protein_coding protein_coding MGP_C3HHeJ_T0040002.1 MGP_C3HHeJ_G0021371.1 mouse_genomes_project 14 99059750 99078639 - MGP_C3HHeJ_P0040002 Fbxl3 protein_coding protein_coding MGP_C3HHeJ_T0040003.1 MGP_C3HHeJ_G0021371.1 mouse_genomes_project 14 99060400 99078615 - MGP_C3HHeJ_P0040003 Fbxl3 protein_coding protein_coding MGP_C3HHeJ_T0040004.1 MGP_C3HHeJ_G0021371.1 mouse_genomes_project 14 99061821 99069457 - Fbxl3 protein_coding retained_intron MGP_C3HHeJ_T0040005.1 MGP_C3HHeJ_G0021371.1 mouse_genomes_project 14 99069053 99079206 - MGP_C3HHeJ_P0040005 Fbxl3 protein_coding protein_coding MGP_C3HHeJ_T0040006.1 MGP_C3HHeJ_G0021371.1 mouse_genomes_project 14 99069091 99075388 - MGP_C3HHeJ_P0040006 Fbxl3 protein_coding protein_coding MGP_C3HHeJ_T0038590.1 MGP_C3HHeJ_G0020882.1 mouse_genomes_project 14 25811353 25878834 + MGP_C3HHeJ_P0038590 Ercc6 protein_coding protein_coding MGP_C3HHeJ_T0039491.1 MGP_C3HHeJ_G0021178.1 mouse_genomes_project 14 55694173 55772515 - MGP_C3HHeJ_P0039491 Tnfrsf19 protein_coding protein_coding MGP_C3HHeJ_T0039492.1 MGP_C3HHeJ_G0021178.1 mouse_genomes_project 14 55694173 55782967 - MGP_C3HHeJ_P0039492 Tnfrsf19 protein_coding protein_coding MGP_C3HHeJ_T0002587.1 MGP_C3HHeJ_G0002487.1 mouse_genomes_project 14 48096482 48097084 + MGP_C3HHeJ_P0002587 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039193.1 MGP_C3HHeJ_G0021081.1 mouse_genomes_project 14 49512506 49557652 + MGP_C3HHeJ_P0039193 Thtpa protein_coding protein_coding MGP_C3HHeJ_T0039194.1 MGP_C3HHeJ_G0021081.1 mouse_genomes_project 14 49513576 49558039 + Thtpa protein_coding processed_transcript MGP_C3HHeJ_T0039195.1 MGP_C3HHeJ_G0021081.1 mouse_genomes_project 14 49514112 49559113 + MGP_C3HHeJ_P0039195 Thtpa protein_coding protein_coding MGP_C3HHeJ_T0039200.1 MGP_C3HHeJ_G0021081.1 mouse_genomes_project 14 49554910 49559113 + MGP_C3HHeJ_P0039200 Thtpa protein_coding protein_coding MGP_C3HHeJ_T0003500.1 MGP_C3HHeJ_G0003181.1 mouse_genomes_project 14 64337325 64340217 + Gm27222 antisense antisense MGP_C3HHeJ_T0002538.1 MGP_C3HHeJ_G0002448.1 mouse_genomes_project 14 48570233 48570296 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0039477.1 MGP_C3HHeJ_G0021173.1 mouse_genomes_project 14 54991244 55031686 + MGP_C3HHeJ_P0039477 Mtmr6 protein_coding protein_coding MGP_C3HHeJ_T0009935.1 MGP_C3HHeJ_G0008068.1 mouse_genomes_project 14 111608341 111608448 + Mir20a miRNA miRNA MGP_C3HHeJ_T0039373.1 MGP_C3HHeJ_G0021138.1 mouse_genomes_project 14 51103637 51188751 + MGP_C3HHeJ_P0039373 Parp4 protein_coding protein_coding MGP_C3HHeJ_T0039374.1 MGP_C3HHeJ_G0021138.1 mouse_genomes_project 14 51184291 51188749 + Parp4 protein_coding retained_intron MGP_C3HHeJ_T0039436.1 MGP_C3HHeJ_G0021160.1 mouse_genomes_project 14 53794071 53804661 - MGP_C3HHeJ_P0039436 1700129C05Rik protein_coding protein_coding MGP_C3HHeJ_T0039437.1 MGP_C3HHeJ_G0021160.1 mouse_genomes_project 14 53794270 53804661 - MGP_C3HHeJ_P0039437 1700129C05Rik protein_coding protein_coding MGP_C3HHeJ_T0039438.1 MGP_C3HHeJ_G0021160.1 mouse_genomes_project 14 53794273 53804661 - MGP_C3HHeJ_P0039438 1700129C05Rik protein_coding protein_coding MGP_C3HHeJ_T0039439.1 MGP_C3HHeJ_G0021160.1 mouse_genomes_project 14 53803088 53804661 - MGP_C3HHeJ_P0039439 1700129C05Rik protein_coding protein_coding MGP_C3HHeJ_T0039771.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65667320 65674753 + Dok2 protein_coding processed_transcript MGP_C3HHeJ_T0039772.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65667333 65673319 + Dok2 protein_coding processed_transcript MGP_C3HHeJ_T0039773.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65674452 65677193 + Dok2 protein_coding processed_transcript MGP_C3HHeJ_T0039774.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65675484 65679676 + MGP_C3HHeJ_P0039774 Dok2 protein_coding protein_coding MGP_C3HHeJ_T0039775.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65677059 65678050 + Dok2 protein_coding retained_intron MGP_C3HHeJ_T0039776.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65677358 65678733 + Dok2 protein_coding processed_transcript MGP_C3HHeJ_T0039777.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65677543 65678742 + Dok2 protein_coding processed_transcript MGP_C3HHeJ_T0039778.1 MGP_C3HHeJ_G0021292.1 mouse_genomes_project 14 65677890 65678776 + Dok2 protein_coding retained_intron MGP_C3HHeJ_T0100183.1 MGP_C3HHeJ_G0038377.1 mouse_genomes_project 14 25479214 25479411 - Gm23946 snoRNA snoRNA MGP_C3HHeJ_T0038152.1 MGP_C3HHeJ_G0020781.1 mouse_genomes_project 14 13628917 13644851 + MGP_C3HHeJ_P0038152 Zswim8 protein_coding protein_coding MGP_C3HHeJ_T0038171.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14421570 14459012 + MGP_C3HHeJ_P0038171 Kat6b protein_coding protein_coding MGP_C3HHeJ_T0038172.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14421595 14566285 + Kat6b protein_coding processed_transcript MGP_C3HHeJ_T0038173.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14441160 14617078 + MGP_C3HHeJ_P0038173 Kat6b protein_coding protein_coding MGP_C3HHeJ_T0038174.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14441175 14617485 + MGP_C3HHeJ_P0038174 Kat6b protein_coding protein_coding MGP_C3HHeJ_T0038175.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14441244 14460544 + Kat6b protein_coding retained_intron MGP_C3HHeJ_T0038176.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14441246 14617260 + MGP_C3HHeJ_P0038176 Kat6b protein_coding unknown_likely_coding MGP_C3HHeJ_T0038177.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14441258 14617140 + MGP_C3HHeJ_P0038177 Kat6b protein_coding protein_coding MGP_C3HHeJ_T0038178.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14442243 14565711 + Kat6b protein_coding retained_intron MGP_C3HHeJ_T0038179.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14442275 14462205 + Kat6b protein_coding retained_intron MGP_C3HHeJ_T0038180.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14442279 14564915 + Kat6b protein_coding retained_intron MGP_C3HHeJ_T0038181.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14442282 14617485 + MGP_C3HHeJ_P0038181 Kat6b protein_coding protein_coding MGP_C3HHeJ_T0038182.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14458651 14616213 + MGP_C3HHeJ_P0038182 Kat6b protein_coding protein_coding MGP_C3HHeJ_T0038183.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14566268 14569858 + Kat6b protein_coding retained_intron MGP_C3HHeJ_T0038184.1 MGP_C3HHeJ_G0020788.1 mouse_genomes_project 14 14566849 14578894 + Kat6b protein_coding retained_intron MGP_C3HHeJ_T0009921.1 MGP_C3HHeJ_G0008054.1 mouse_genomes_project 14 70281515 70281618 + Gm44482 miRNA miRNA MGP_C3HHeJ_T0038109.1 MGP_C3HHeJ_G0020763.1 mouse_genomes_project 14 12975406 12983678 - MGP_C3HHeJ_P0038109 Saysd1 protein_coding protein_coding MGP_C3HHeJ_T0038100.1 MGP_C3HHeJ_G0020759.1 mouse_genomes_project 14 12250932 12257851 - MGP_C3HHeJ_P0038100 Gm9637 protein_coding protein_coding MGP_C3HHeJ_T0100177.1 MGP_C3HHeJ_G0038371.1 mouse_genomes_project 14 13108423 13108540 - Gm24912 snoRNA snoRNA MGP_C3HHeJ_T0017207.1 MGP_C3HHeJ_G0015047.1 mouse_genomes_project 14 115806336 115824597 + Gm16835 processed_transcript processed_transcript MGP_C3HHeJ_T0039349.1 MGP_C3HHeJ_G0021117.1 mouse_genomes_project 14 50351584 50371783 + MGP_C3HHeJ_P0039349 Nynrin protein_coding protein_coding MGP_C3HHeJ_T0039350.1 MGP_C3HHeJ_G0021117.1 mouse_genomes_project 14 50351663 50372227 + MGP_C3HHeJ_P0039350 Nynrin protein_coding protein_coding MGP_C3HHeJ_T0038717.1 MGP_C3HHeJ_G0020935.1 mouse_genomes_project 14 38574044 38586033 - MGP_C3HHeJ_P0038717 Ptgdr protein_coding protein_coding MGP_C3HHeJ_T0038450.1 MGP_C3HHeJ_G0020853.1 mouse_genomes_project 14 24328273 24371397 - MGP_C3HHeJ_P0038450 Smim4 protein_coding protein_coding MGP_C3HHeJ_T0038451.1 MGP_C3HHeJ_G0020853.1 mouse_genomes_project 14 24328800 24371417 - MGP_C3HHeJ_P0038451 Smim4 protein_coding protein_coding MGP_C3HHeJ_T0038452.1 MGP_C3HHeJ_G0020853.1 mouse_genomes_project 14 24367061 24371342 - MGP_C3HHeJ_P0038452 Smim4 protein_coding protein_coding MGP_C3HHeJ_T0038453.1 MGP_C3HHeJ_G0020853.1 mouse_genomes_project 14 24367358 24371434 - MGP_C3HHeJ_P0038453 Smim4 protein_coding protein_coding MGP_C3HHeJ_T0100203.1 MGP_C3HHeJ_G0038397.1 mouse_genomes_project 14 63236704 63236826 - Gm22319 snoRNA snoRNA MGP_C3HHeJ_T0039029.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46516131 46534998 - MGP_C3HHeJ_P0039029 Rab2b protein_coding protein_coding MGP_C3HHeJ_T0039030.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46516138 46534751 - MGP_C3HHeJ_P0039030 Rab2b protein_coding protein_coding MGP_C3HHeJ_T0039031.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46516141 46522611 - Rab2b protein_coding retained_intron MGP_C3HHeJ_T0039032.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46516143 46534792 - MGP_C3HHeJ_P0039032 Rab2b protein_coding protein_coding MGP_C3HHeJ_T0039033.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46518095 46534104 - Rab2b protein_coding processed_transcript MGP_C3HHeJ_T0039034.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46518095 46534694 - MGP_C3HHeJ_P0039034 Rab2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039035.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46518095 46534694 - MGP_C3HHeJ_P0039035 Rab2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039036.1 MGP_C3HHeJ_G0021035.1 mouse_genomes_project 14 46519135 46530627 - MGP_C3HHeJ_P0039036 Rab2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039234.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039106 50049166 + MGP_C3HHeJ_P0039234 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039235.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039118 50040542 + MGP_C3HHeJ_P0039235 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039236.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039121 50039857 + Dcaf11 protein_coding processed_transcript MGP_C3HHeJ_T0039237.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039125 50042034 + MGP_C3HHeJ_P0039237 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039238.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039162 50049165 + MGP_C3HHeJ_P0039238 Dcaf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039239.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039221 50048636 + Dcaf11 protein_coding retained_intron MGP_C3HHeJ_T0039240.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039582 50040200 + Dcaf11 protein_coding processed_transcript MGP_C3HHeJ_T0039241.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039612 50049032 + MGP_C3HHeJ_P0039241 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039242.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039618 50040544 + MGP_C3HHeJ_P0039242 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039243.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039633 50043504 + MGP_C3HHeJ_P0039243 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039244.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50039634 50049162 + MGP_C3HHeJ_P0039244 Dcaf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039245.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50040029 50049163 + MGP_C3HHeJ_P0039245 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039246.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50040071 50042881 + MGP_C3HHeJ_P0039246 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039247.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50040084 50049165 + Dcaf11 protein_coding retained_intron MGP_C3HHeJ_T0039248.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50040167 50049032 + MGP_C3HHeJ_P0039248 Dcaf11 protein_coding protein_coding MGP_C3HHeJ_T0039249.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50040167 50049032 + MGP_C3HHeJ_P0039249 Dcaf11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039250.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50043491 50043944 + Dcaf11 protein_coding retained_intron MGP_C3HHeJ_T0039251.1 MGP_C3HHeJ_G0021092.1 mouse_genomes_project 14 50044962 50048490 + Dcaf11 protein_coding processed_transcript MGP_C3HHeJ_T0100217.1 MGP_C3HHeJ_G0038411.1 mouse_genomes_project 14 93133049 93133187 - Gm23276 snoRNA snoRNA MGP_C3HHeJ_T0003471.1 MGP_C3HHeJ_G0003158.1 mouse_genomes_project 14 39362525 39373269 + Gm15601 antisense antisense MGP_C3HHeJ_T0039866.1 MGP_C3HHeJ_G0021320.1 mouse_genomes_project 14 71145681 71170277 - MGP_C3HHeJ_P0039866 Gpalpp1 protein_coding protein_coding MGP_C3HHeJ_T0039505.1 MGP_C3HHeJ_G0021184.1 mouse_genomes_project 14 56284871 56309440 - MGP_C3HHeJ_P0039505 Spryd7 protein_coding protein_coding MGP_C3HHeJ_T0039506.1 MGP_C3HHeJ_G0021184.1 mouse_genomes_project 14 56287173 56309312 - MGP_C3HHeJ_P0039506 Spryd7 protein_coding protein_coding MGP_C3HHeJ_T0098918.1 MGP_C3HHeJ_G0037112.1 mouse_genomes_project 14 14762655 14762800 + Gm23502 snRNA snRNA MGP_C3HHeJ_T0038111.1 MGP_C3HHeJ_G0020765.1 mouse_genomes_project 14 13174018 13180398 - MGP_C3HHeJ_P0038111 Kcnk16 protein_coding protein_coding MGP_C3HHeJ_T0037979.1 MGP_C3HHeJ_G0020721.1 mouse_genomes_project 14 317990 375580 + MGP_C3HHeJ_P0037979 Abhd6 protein_coding protein_coding MGP_C3HHeJ_T0037980.1 MGP_C3HHeJ_G0020721.1 mouse_genomes_project 14 318054 374887 + MGP_C3HHeJ_P0037980 Abhd6 protein_coding protein_coding MGP_C3HHeJ_T0038644.1 MGP_C3HHeJ_G0020906.1 mouse_genomes_project 14 27688594 27727384 + MGP_C3HHeJ_P0038644 Glud1 protein_coding protein_coding MGP_C3HHeJ_T0038645.1 MGP_C3HHeJ_G0020906.1 mouse_genomes_project 14 27709568 27715146 + Glud1 protein_coding retained_intron MGP_C3HHeJ_T0038646.1 MGP_C3HHeJ_G0020906.1 mouse_genomes_project 14 27713121 27719803 + Glud1 protein_coding processed_transcript MGP_C3HHeJ_T0038647.1 MGP_C3HHeJ_G0020906.1 mouse_genomes_project 14 27715188 27724407 + MGP_C3HHeJ_P0038647 Glud1 protein_coding protein_coding MGP_C3HHeJ_T0038648.1 MGP_C3HHeJ_G0020906.1 mouse_genomes_project 14 27716294 27724197 + Glud1 protein_coding processed_transcript MGP_C3HHeJ_T0012894.1 MGP_C3HHeJ_G0010998.1 mouse_genomes_project 14 69743721 69757422 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038658.1 MGP_C3HHeJ_G0020912.1 mouse_genomes_project 14 27923435 27988349 - MGP_C3HHeJ_P0038658 Ldb3 protein_coding protein_coding MGP_C3HHeJ_T0038659.1 MGP_C3HHeJ_G0020912.1 mouse_genomes_project 14 27923435 27988423 - MGP_C3HHeJ_P0038659 Ldb3 protein_coding protein_coding MGP_C3HHeJ_T0038660.1 MGP_C3HHeJ_G0020912.1 mouse_genomes_project 14 27923435 27988423 - MGP_C3HHeJ_P0038660 Ldb3 protein_coding protein_coding MGP_C3HHeJ_T0038661.1 MGP_C3HHeJ_G0020912.1 mouse_genomes_project 14 27923435 27988423 - MGP_C3HHeJ_P0038661 Ldb3 protein_coding protein_coding MGP_C3HHeJ_T0038662.1 MGP_C3HHeJ_G0020912.1 mouse_genomes_project 14 27926196 27979050 - MGP_C3HHeJ_P0038662 Ldb3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038663.1 MGP_C3HHeJ_G0020912.1 mouse_genomes_project 14 27960904 27988423 - MGP_C3HHeJ_P0038663 Ldb3 protein_coding protein_coding MGP_C3HHeJ_T0038347.1 MGP_C3HHeJ_G0020828.1 mouse_genomes_project 14 20617927 20644709 - MGP_C3HHeJ_P0038347 Ccdc66 protein_coding protein_coding MGP_C3HHeJ_T0040091.1 MGP_C3HHeJ_G0021406.1 mouse_genomes_project 14 118268304 118320945 - MGP_C3HHeJ_P0040091 Slc15a1 protein_coding protein_coding MGP_C3HHeJ_T0012853.1 MGP_C3HHeJ_G0010957.1 mouse_genomes_project 14 18993390 18994579 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038992.1 MGP_C3HHeJ_G0021028.1 mouse_genomes_project 14 46252237 46270725 - MGP_C3HHeJ_P0038992 Zfp219 protein_coding protein_coding MGP_C3HHeJ_T0038993.1 MGP_C3HHeJ_G0021028.1 mouse_genomes_project 14 46252246 46269705 - MGP_C3HHeJ_P0038993 Zfp219 protein_coding protein_coding MGP_C3HHeJ_T0002513.1 MGP_C3HHeJ_G0002425.1 mouse_genomes_project 14 48617181 48617240 + MGP_C3HHeJ_P0002513 Traj11 TR_J_gene TR_J_gene MGP_C3HHeJ_T0003484.1 MGP_C3HHeJ_G0003169.1 mouse_genomes_project 14 50046319 50055092 - Gm15932 antisense antisense MGP_C3HHeJ_T0039366.1 MGP_C3HHeJ_G0021132.1 mouse_genomes_project 14 50719902 50721696 - MGP_C3HHeJ_P0039366 Gzmf protein_coding protein_coding MGP_C3HHeJ_T0040040.1 MGP_C3HHeJ_G0021383.1 mouse_genomes_project 14 105137577 105141826 - MGP_C3HHeJ_P0040040 Slitrk1 protein_coding protein_coding MGP_C3HHeJ_T0039821.1 MGP_C3HHeJ_G0021301.1 mouse_genomes_project 14 68466683 68498429 - MGP_C3HHeJ_P0039821 protein_coding protein_coding MGP_C3HHeJ_T0012860.1 MGP_C3HHeJ_G0010964.1 mouse_genomes_project 14 25554671 25555827 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038628.1 MGP_C3HHeJ_G0020893.1 mouse_genomes_project 14 26926805 26979851 + MGP_C3HHeJ_P0038628 Ptpn20 protein_coding protein_coding MGP_C3HHeJ_T0006596.1 MGP_C3HHeJ_G0005448.1 mouse_genomes_project 14 25987347 25989216 + Gm28651 lincRNA lincRNA MGP_C3HHeJ_T0011277.1 MGP_C3HHeJ_G0009410.1 mouse_genomes_project 14 39227435 39227718 - Gm22637 misc_RNA misc_RNA MGP_C3HHeJ_T0039327.1 MGP_C3HHeJ_G0021106.1 mouse_genomes_project 14 50160571 50163306 - MGP_C3HHeJ_P0039327 Tinf2 protein_coding protein_coding MGP_C3HHeJ_T0012874.1 MGP_C3HHeJ_G0010978.1 mouse_genomes_project 14 46617868 46618635 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039058.1 MGP_C3HHeJ_G0021038.1 mouse_genomes_project 14 46565181 46570336 - Sall2 protein_coding processed_transcript MGP_C3HHeJ_T0039059.1 MGP_C3HHeJ_G0021038.1 mouse_genomes_project 14 46565181 46584217 - MGP_C3HHeJ_P0039059 Sall2 protein_coding protein_coding MGP_C3HHeJ_T0039951.1 MGP_C3HHeJ_G0021353.1 mouse_genomes_project 14 91617407 91618916 + MGP_C3HHeJ_P0039951 4921530L21Rik protein_coding protein_coding MGP_C3HHeJ_T0039723.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65041314 65044792 - MGP_C3HHeJ_P0039723 Pdlim2 protein_coding protein_coding MGP_C3HHeJ_T0039724.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65041550 65044926 - MGP_C3HHeJ_P0039724 Pdlim2 protein_coding protein_coding MGP_C3HHeJ_T0039725.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65041568 65054618 - MGP_C3HHeJ_P0039725 Pdlim2 protein_coding protein_coding MGP_C3HHeJ_T0039726.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65044716 65052281 - MGP_C3HHeJ_P0039726 Pdlim2 protein_coding protein_coding MGP_C3HHeJ_T0039727.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65044742 65053667 - Pdlim2 protein_coding retained_intron MGP_C3HHeJ_T0039728.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65046365 65052274 - Pdlim2 protein_coding retained_intron MGP_C3HHeJ_T0039729.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65048386 65052268 - Pdlim2 protein_coding retained_intron MGP_C3HHeJ_T0039730.1 MGP_C3HHeJ_G0021274.1 mouse_genomes_project 14 65048464 65048939 - Pdlim2 protein_coding retained_intron MGP_C3HHeJ_T0038587.1 MGP_C3HHeJ_G0020879.1 mouse_genomes_project 14 25668444 25680800 - MGP_C3HHeJ_P0038587 1700024G13Rik protein_coding protein_coding MGP_C3HHeJ_T0012910.1 MGP_C3HHeJ_G0011014.1 mouse_genomes_project 14 112138488 112139088 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038767.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40676392 40916867 + MGP_C3HHeJ_P0038767 Samd4 protein_coding protein_coding MGP_C3HHeJ_T0038768.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40676503 40921341 + MGP_C3HHeJ_P0038768 Samd4 protein_coding protein_coding MGP_C3HHeJ_T0038769.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40677044 40678889 + Samd4 protein_coding processed_transcript MGP_C3HHeJ_T0038770.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40678417 40921335 + MGP_C3HHeJ_P0038770 Samd4 protein_coding protein_coding MGP_C3HHeJ_T0038771.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40810212 40812128 + Samd4 protein_coding processed_transcript MGP_C3HHeJ_T0038772.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40810219 40915356 + MGP_C3HHeJ_P0038772 Samd4 protein_coding protein_coding MGP_C3HHeJ_T0038773.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40825004 40915181 + MGP_C3HHeJ_P0038773 Samd4 protein_coding protein_coding MGP_C3HHeJ_T0038774.1 MGP_C3HHeJ_G0020951.1 mouse_genomes_project 14 40900109 40902853 + Samd4 protein_coding processed_transcript MGP_C3HHeJ_T0012844.1 MGP_C3HHeJ_G0010948.1 mouse_genomes_project 14 11223061 11224159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002471.1 MGP_C3HHeJ_G0002385.1 mouse_genomes_project 14 48568060 48568123 + MGP_C3HHeJ_P0002471 Traj56 TR_J_gene TR_J_gene MGP_C3HHeJ_T0100201.1 MGP_C3HHeJ_G0038395.1 mouse_genomes_project 14 61989406 61989539 + Gm24258 snoRNA snoRNA MGP_C3HHeJ_T0040055.1 MGP_C3HHeJ_G0021392.1 mouse_genomes_project 14 114883014 114886813 - MGP_C3HHeJ_P0040055 Sox21 protein_coding protein_coding MGP_C3HHeJ_T0040052.1 MGP_C3HHeJ_G0021389.1 mouse_genomes_project 14 114658127 114699858 - MGP_C3HHeJ_P0040052 Dct protein_coding protein_coding MGP_C3HHeJ_T0039339.1 MGP_C3HHeJ_G0021111.1 mouse_genomes_project 14 50239791 50247764 - MGP_C3HHeJ_P0039339 Cideb protein_coding protein_coding MGP_C3HHeJ_T0039340.1 MGP_C3HHeJ_G0021111.1 mouse_genomes_project 14 50240404 50247685 - Cideb protein_coding retained_intron MGP_C3HHeJ_T0040064.1 MGP_C3HHeJ_G0021397.1 mouse_genomes_project 14 115633045 115677889 + MGP_C3HHeJ_P0040064 Dnajc3 protein_coding protein_coding MGP_C3HHeJ_T0038699.1 MGP_C3HHeJ_G0020927.1 mouse_genomes_project 14 34506063 34537108 - MGP_C3HHeJ_P0038699 Tspan14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038700.1 MGP_C3HHeJ_G0020927.1 mouse_genomes_project 14 34506068 34570128 - MGP_C3HHeJ_P0038700 Tspan14 protein_coding protein_coding MGP_C3HHeJ_T0039822.1 MGP_C3HHeJ_G0021302.1 mouse_genomes_project 14 68468898 68473255 - MGP_C3HHeJ_P0039822 protein_coding protein_coding MGP_C3HHeJ_T0006578.1 MGP_C3HHeJ_G0005437.1 mouse_genomes_project 14 17668973 17679557 - lincRNA lincRNA MGP_C3HHeJ_T0006579.1 MGP_C3HHeJ_G0005437.1 mouse_genomes_project 14 17677363 17679550 - lincRNA lincRNA MGP_C3HHeJ_T0038185.1 MGP_C3HHeJ_G0020789.1 mouse_genomes_project 14 14622988 14662022 - MGP_C3HHeJ_P0038185 Dupd1 protein_coding protein_coding MGP_C3HHeJ_T0002518.1 MGP_C3HHeJ_G0002430.1 mouse_genomes_project 14 48626494 48626557 + MGP_C3HHeJ_P0002518 Traj4 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038712.1 MGP_C3HHeJ_G0020931.1 mouse_genomes_project 14 34716368 34735400 + MGP_C3HHeJ_P0038712 Mat1a protein_coding protein_coding MGP_C3HHeJ_T0002581.1 MGP_C3HHeJ_G0002482.1 mouse_genomes_project 14 47656752 47657284 + MGP_C3HHeJ_P0002581 TR_V_gene TR_V_gene MGP_C3HHeJ_T0100202.1 MGP_C3HHeJ_G0038396.1 mouse_genomes_project 14 62614899 62615031 + Gm24981 snoRNA snoRNA MGP_C3HHeJ_T0038708.1 MGP_C3HHeJ_G0020929.1 mouse_genomes_project 14 34664880 34678639 - MGP_C3HHeJ_P0038708 Dydc2 protein_coding protein_coding MGP_C3HHeJ_T0038861.1 MGP_C3HHeJ_G0020969.1 mouse_genomes_project 14 43863357 43871713 - MGP_C3HHeJ_P0038861 Olfr722 protein_coding protein_coding MGP_C3HHeJ_T0100178.1 MGP_C3HHeJ_G0038372.1 mouse_genomes_project 14 19590357 19590488 + Gm24031 snoRNA snoRNA MGP_C3HHeJ_T0000895.1 MGP_C3HHeJ_G0000835.1 mouse_genomes_project 14 84882831 84883266 + TEC TEC MGP_C3HHeJ_T0038906.1 MGP_C3HHeJ_G0021002.1 mouse_genomes_project 14 45009059 45011157 + MGP_C3HHeJ_P0038906 Apex1 protein_coding protein_coding MGP_C3HHeJ_T0038907.1 MGP_C3HHeJ_G0021002.1 mouse_genomes_project 14 45009060 45010569 + MGP_C3HHeJ_P0038907 Apex1 protein_coding protein_coding MGP_C3HHeJ_T0038908.1 MGP_C3HHeJ_G0021002.1 mouse_genomes_project 14 45009069 45009725 + MGP_C3HHeJ_P0038908 Apex1 protein_coding protein_coding MGP_C3HHeJ_T0038909.1 MGP_C3HHeJ_G0021002.1 mouse_genomes_project 14 45009376 45011157 + MGP_C3HHeJ_P0038909 Apex1 protein_coding protein_coding MGP_C3HHeJ_T0006592.1 MGP_C3HHeJ_G0005444.1 mouse_genomes_project 14 19477672 19484066 + Slmapos2 lincRNA lincRNA MGP_C3HHeJ_T0040041.1 MGP_C3HHeJ_G0021384.1 mouse_genomes_project 14 106921176 106922056 + MGP_C3HHeJ_P0040041 protein_coding protein_coding MGP_C3HHeJ_T0012838.1 MGP_C3HHeJ_G0010942.1 mouse_genomes_project 14 2209537 2210138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038938.1 MGP_C3HHeJ_G0021018.1 mouse_genomes_project 14 45562655 45568464 + MGP_C3HHeJ_P0038938 protein_coding protein_coding MGP_C3HHeJ_T0101749.1 MGP_C3HHeJ_G0039714.1 mouse_genomes_project 14 55918980 55943112 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100222.1 MGP_C3HHeJ_G0038416.1 mouse_genomes_project 14 98286434 98286566 - Gm22347 snoRNA snoRNA MGP_C3HHeJ_T0002597.1 MGP_C3HHeJ_G0002493.1 mouse_genomes_project 14 48277533 48278304 + MGP_C3HHeJ_P0002597 Trav21-dv12 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038610.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26540276 26543257 + Arhgap22 protein_coding processed_transcript MGP_C3HHeJ_T0038611.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26540440 26702246 + MGP_C3HHeJ_P0038611 Arhgap22 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038612.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26579800 26602067 + Arhgap22 protein_coding processed_transcript MGP_C3HHeJ_T0038613.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26638021 26702600 + Arhgap22 protein_coding processed_transcript MGP_C3HHeJ_T0038614.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26652369 26702602 + MGP_C3HHeJ_P0038614 Arhgap22 protein_coding protein_coding MGP_C3HHeJ_T0038615.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26683983 26695247 + Arhgap22 protein_coding processed_transcript MGP_C3HHeJ_T0038616.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26694968 26697148 + Arhgap22 protein_coding processed_transcript MGP_C3HHeJ_T0038617.1 MGP_C3HHeJ_G0020890.1 mouse_genomes_project 14 26695047 26695997 + Arhgap22 protein_coding processed_transcript MGP_C3HHeJ_T0039860.1 MGP_C3HHeJ_G0021315.1 mouse_genomes_project 14 70742821 70795126 - MGP_C3HHeJ_P0039860 Cog3 protein_coding protein_coding MGP_C3HHeJ_T0038120.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13306606 13365338 - MGP_C3HHeJ_P0038120 Cfap70 protein_coding protein_coding MGP_C3HHeJ_T0038121.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13306609 13365335 - MGP_C3HHeJ_P0038121 Cfap70 protein_coding protein_coding MGP_C3HHeJ_T0038122.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13306737 13361750 - MGP_C3HHeJ_P0038122 Cfap70 protein_coding protein_coding MGP_C3HHeJ_T0038123.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13336299 13365339 - Cfap70 protein_coding retained_intron MGP_C3HHeJ_T0038124.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13336800 13342093 - Cfap70 protein_coding processed_transcript MGP_C3HHeJ_T0038125.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13351769 13365336 - MGP_C3HHeJ_P0038125 Cfap70 protein_coding protein_coding MGP_C3HHeJ_T0038126.1 MGP_C3HHeJ_G0020771.1 mouse_genomes_project 14 13359464 13361834 - Cfap70 protein_coding retained_intron MGP_C3HHeJ_T0039122.1 MGP_C3HHeJ_G0021056.1 mouse_genomes_project 14 48962360 48978615 - MGP_C3HHeJ_P0039122 Haus4 protein_coding protein_coding MGP_C3HHeJ_T0039559.1 MGP_C3HHeJ_G0021207.1 mouse_genomes_project 14 58716052 58775580 + MGP_C3HHeJ_P0039559 Pinx1 protein_coding protein_coding MGP_C3HHeJ_T0100208.1 MGP_C3HHeJ_G0038402.1 mouse_genomes_project 14 78710455 78710589 + Gm24774 snoRNA snoRNA MGP_C3HHeJ_T0011270.1 MGP_C3HHeJ_G0009403.1 mouse_genomes_project 14 10563515 10563836 - Gm24140 misc_RNA misc_RNA MGP_C3HHeJ_T0002544.1 MGP_C3HHeJ_G0002454.1 mouse_genomes_project 14 48629135 48629164 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0039169.1 MGP_C3HHeJ_G0021071.1 mouse_genomes_project 14 49339075 49353744 + MGP_C3HHeJ_P0039169 Gm20521 protein_coding protein_coding MGP_C3HHeJ_T0002488.1 MGP_C3HHeJ_G0002400.1 mouse_genomes_project 14 48590365 48590427 + MGP_C3HHeJ_P0002488 Traj38 TR_J_gene TR_J_gene MGP_C3HHeJ_T0003511.1 MGP_C3HHeJ_G0003188.1 mouse_genomes_project 14 74952010 74954846 + Gm9748 antisense antisense MGP_C3HHeJ_T0003512.1 MGP_C3HHeJ_G0003188.1 mouse_genomes_project 14 74952084 74954794 + Gm9748 antisense antisense MGP_C3HHeJ_T0006617.1 MGP_C3HHeJ_G0005463.1 mouse_genomes_project 14 48753182 48755584 - 5330426L24Rik lincRNA lincRNA MGP_C3HHeJ_T0009905.1 MGP_C3HHeJ_G0008038.1 mouse_genomes_project 14 52416059 52416123 + Mir3077 miRNA miRNA MGP_C3HHeJ_T0100180.1 MGP_C3HHeJ_G0038374.1 mouse_genomes_project 14 24250103 24250183 - Snord69 snoRNA snoRNA MGP_C3HHeJ_T0039893.1 MGP_C3HHeJ_G0021327.1 mouse_genomes_project 14 72901638 72905680 - MGP_C3HHeJ_P0039893 Gm1587 protein_coding protein_coding MGP_C3HHeJ_T0038715.1 MGP_C3HHeJ_G0020933.1 mouse_genomes_project 14 34765234 34772049 + MGP_C3HHeJ_P0038715 Mbl1 protein_coding protein_coding MGP_C3HHeJ_T0040022.1 MGP_C3HHeJ_G0021376.1 mouse_genomes_project 14 100496393 100503897 - MGP_C3HHeJ_P0040022 Pou4f1 protein_coding protein_coding MGP_C3HHeJ_T0040023.1 MGP_C3HHeJ_G0021376.1 mouse_genomes_project 14 100498705 100500001 - Pou4f1 protein_coding processed_transcript MGP_C3HHeJ_T0039222.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49987345 49994332 + MGP_C3HHeJ_P0039222 Cpne6 protein_coding protein_coding MGP_C3HHeJ_T0039223.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49987348 49994332 + MGP_C3HHeJ_P0039223 Cpne6 protein_coding protein_coding MGP_C3HHeJ_T0039224.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49987375 49994331 + Cpne6 protein_coding retained_intron MGP_C3HHeJ_T0039225.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49987497 49990593 + MGP_C3HHeJ_P0039225 Cpne6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039226.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49988211 49994332 + Cpne6 protein_coding retained_intron MGP_C3HHeJ_T0039227.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49988260 49994332 + MGP_C3HHeJ_P0039227 Cpne6 protein_coding protein_coding MGP_C3HHeJ_T0039228.1 MGP_C3HHeJ_G0021088.1 mouse_genomes_project 14 49988885 49994330 + MGP_C3HHeJ_P0039228 Cpne6 protein_coding protein_coding MGP_C3HHeJ_T0040059.1 MGP_C3HHeJ_G0021395.1 mouse_genomes_project 14 115474396 115564664 + MGP_C3HHeJ_P0040059 Cldn10 protein_coding protein_coding MGP_C3HHeJ_T0040060.1 MGP_C3HHeJ_G0021395.1 mouse_genomes_project 14 115474406 115564665 + MGP_C3HHeJ_P0040060 Cldn10 protein_coding protein_coding MGP_C3HHeJ_T0040061.1 MGP_C3HHeJ_G0021395.1 mouse_genomes_project 14 115544311 115565631 + MGP_C3HHeJ_P0040061 Cldn10 protein_coding protein_coding MGP_C3HHeJ_T0002565.1 MGP_C3HHeJ_G0002469.1 mouse_genomes_project 14 46992380 46992860 + MGP_C3HHeJ_P0002565 Trav6d-4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002566.1 MGP_C3HHeJ_G0002469.1 mouse_genomes_project 14 46992411 46992860 + MGP_C3HHeJ_P0002566 Trav6d-4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0038075.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964323 10976423 + MGP_C3HHeJ_P0038075 Nkiras1 protein_coding protein_coding MGP_C3HHeJ_T0038076.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964373 10972562 + MGP_C3HHeJ_P0038076 Nkiras1 protein_coding protein_coding MGP_C3HHeJ_T0038077.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964391 10969841 + Nkiras1 protein_coding retained_intron MGP_C3HHeJ_T0038078.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964398 10970924 + Nkiras1 protein_coding processed_transcript MGP_C3HHeJ_T0038079.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964414 10972957 + MGP_C3HHeJ_P0038079 Nkiras1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038080.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964425 10969596 + Nkiras1 protein_coding retained_intron MGP_C3HHeJ_T0038081.1 MGP_C3HHeJ_G0020756.1 mouse_genomes_project 14 10964451 10971065 + Nkiras1 protein_coding processed_transcript MGP_C3HHeJ_T0040080.1 MGP_C3HHeJ_G0021400.1 mouse_genomes_project 14 116749402 116780908 - MGP_C3HHeJ_P0040080 Oxgr1 protein_coding protein_coding MGP_C3HHeJ_T0098957.1 MGP_C3HHeJ_G0037151.1 mouse_genomes_project 14 101327359 101327466 + Gm22290 snRNA snRNA MGP_C3HHeJ_T0038898.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44985240 45008926 - MGP_C3HHeJ_P0038898 Osgep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038899.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44994276 45008985 - MGP_C3HHeJ_P0038899 Osgep protein_coding protein_coding MGP_C3HHeJ_T0038900.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44996271 45008922 - MGP_C3HHeJ_P0038900 Osgep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038901.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44996275 45008964 - MGP_C3HHeJ_P0038901 Osgep protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038902.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44996275 45008780 - MGP_C3HHeJ_P0038902 Osgep protein_coding protein_coding MGP_C3HHeJ_T0038903.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44996377 44997959 - Osgep protein_coding retained_intron MGP_C3HHeJ_T0038904.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44997280 45008718 - MGP_C3HHeJ_P0038904 Osgep protein_coding protein_coding MGP_C3HHeJ_T0038905.1 MGP_C3HHeJ_G0021001.1 mouse_genomes_project 14 44997680 45008935 - Osgep protein_coding retained_intron MGP_C3HHeJ_T0002578.1 MGP_C3HHeJ_G0002479.1 mouse_genomes_project 14 47441156 47441684 + MGP_C3HHeJ_P0002578 TR_V_gene TR_V_gene MGP_C3HHeJ_T0098952.1 MGP_C3HHeJ_G0037146.1 mouse_genomes_project 14 95197521 95197643 - Gm22984 snRNA snRNA MGP_C3HHeJ_T0038928.1 MGP_C3HHeJ_G0021011.1 mouse_genomes_project 14 45175391 45190292 + MGP_C3HHeJ_P0038928 Rnase4 protein_coding protein_coding MGP_C3HHeJ_T0038930.1 MGP_C3HHeJ_G0021011.1 mouse_genomes_project 14 45180118 45190292 + MGP_C3HHeJ_P0038930 Rnase4 protein_coding protein_coding MGP_C3HHeJ_T0002465.1 MGP_C3HHeJ_G0002381.1 mouse_genomes_project 14 48543021 48543080 + MGP_C3HHeJ_P0002465 Trdj2 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038322.1 MGP_C3HHeJ_G0020819.1 mouse_genomes_project 14 19737641 19759949 + MGP_C3HHeJ_P0038322 Arf4 protein_coding protein_coding MGP_C3HHeJ_T0038323.1 MGP_C3HHeJ_G0020819.1 mouse_genomes_project 14 19737793 19759492 + MGP_C3HHeJ_P0038323 Arf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038324.1 MGP_C3HHeJ_G0020819.1 mouse_genomes_project 14 19737820 19759499 + Arf4 protein_coding processed_transcript MGP_C3HHeJ_T0038325.1 MGP_C3HHeJ_G0020819.1 mouse_genomes_project 14 19737914 19759505 + MGP_C3HHeJ_P0038325 Arf4 protein_coding protein_coding MGP_C3HHeJ_T0038326.1 MGP_C3HHeJ_G0020819.1 mouse_genomes_project 14 19755701 19756548 + Arf4 protein_coding retained_intron MGP_C3HHeJ_T0038327.1 MGP_C3HHeJ_G0020819.1 mouse_genomes_project 14 19755821 19767703 + MGP_C3HHeJ_P0038327 Arf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039861.1 MGP_C3HHeJ_G0021316.1 mouse_genomes_project 14 70802657 70827730 - MGP_C3HHeJ_P0039861 Slc25a30 protein_coding protein_coding MGP_C3HHeJ_T0098915.1 MGP_C3HHeJ_G0037109.1 mouse_genomes_project 14 11144039 11144195 + Gm22350 snRNA snRNA MGP_C3HHeJ_T0039769.1 MGP_C3HHeJ_G0021291.1 mouse_genomes_project 14 65558249 65667889 - MGP_C3HHeJ_P0039769 Xpo7 protein_coding protein_coding MGP_C3HHeJ_T0039770.1 MGP_C3HHeJ_G0021291.1 mouse_genomes_project 14 65558249 65667889 - MGP_C3HHeJ_P0039770 Xpo7 protein_coding protein_coding MGP_C3HHeJ_T0039930.1 MGP_C3HHeJ_G0021346.1 mouse_genomes_project 14 75046594 75051915 - MGP_C3HHeJ_P0039930 Gm10845 protein_coding protein_coding MGP_C3HHeJ_T0002604.1 MGP_C3HHeJ_G0002498.1 mouse_genomes_project 14 48486843 48487454 + MGP_C3HHeJ_P0002604 Trdv4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0100224.1 MGP_C3HHeJ_G0038418.1 mouse_genomes_project 14 101025060 101025194 + Gm24280 snoRNA snoRNA MGP_C3HHeJ_T0038687.1 MGP_C3HHeJ_G0020919.1 mouse_genomes_project 14 30490461 30504183 - MGP_C3HHeJ_P0038687 Rgr protein_coding protein_coding MGP_C3HHeJ_T0038859.1 MGP_C3HHeJ_G0020968.1 mouse_genomes_project 14 43645193 43749506 - MGP_C3HHeJ_P0038859 3632451O06Rik protein_coding protein_coding MGP_C3HHeJ_T0038860.1 MGP_C3HHeJ_G0020968.1 mouse_genomes_project 14 43645301 43749494 - MGP_C3HHeJ_P0038860 3632451O06Rik protein_coding protein_coding MGP_C3HHeJ_T0003468.1 MGP_C3HHeJ_G0003155.1 mouse_genomes_project 14 32024394 32035168 + Gm20641 antisense antisense MGP_C3HHeJ_T0038046.1 MGP_C3HHeJ_G0020746.1 mouse_genomes_project 14 7296316 7405642 + MGP_C3HHeJ_P0038046 Slc4a7 protein_coding protein_coding MGP_C3HHeJ_T0101743.1 MGP_C3HHeJ_G0039708.1 mouse_genomes_project 14 45314854 45419653 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0038205.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14782628 14791766 + MGP_C3HHeJ_P0038205 Vdac2 protein_coding protein_coding MGP_C3HHeJ_T0038206.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14782860 14797084 + MGP_C3HHeJ_P0038206 Vdac2 protein_coding protein_coding MGP_C3HHeJ_T0038207.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14783083 14789162 + MGP_C3HHeJ_P0038207 Vdac2 protein_coding protein_coding MGP_C3HHeJ_T0038208.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14784973 14789356 + Vdac2 protein_coding processed_transcript MGP_C3HHeJ_T0038209.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14789078 14791874 + Vdac2 protein_coding retained_intron MGP_C3HHeJ_T0038210.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14789175 14790211 + Vdac2 protein_coding retained_intron MGP_C3HHeJ_T0038211.1 MGP_C3HHeJ_G0020792.1 mouse_genomes_project 14 14793612 14796723 + Vdac2 protein_coding retained_intron MGP_C3HHeJ_T0039323.1 MGP_C3HHeJ_G0021103.1 mouse_genomes_project 14 50138806 50141429 - MGP_C3HHeJ_P0039323 Mdp1 protein_coding protein_coding MGP_C3HHeJ_T0039920.1 MGP_C3HHeJ_G0021343.1 mouse_genomes_project 14 74764450 74809527 + MGP_C3HHeJ_P0039920 Sugt1 protein_coding protein_coding MGP_C3HHeJ_T0039213.1 MGP_C3HHeJ_G0021084.1 mouse_genomes_project 14 49566956 49577062 - MGP_C3HHeJ_P0039213 Jph4 protein_coding protein_coding MGP_C3HHeJ_T0039214.1 MGP_C3HHeJ_G0021084.1 mouse_genomes_project 14 49567403 49575679 - MGP_C3HHeJ_P0039214 Jph4 protein_coding protein_coding MGP_C3HHeJ_T0039215.1 MGP_C3HHeJ_G0021084.1 mouse_genomes_project 14 49569768 49570685 - Jph4 protein_coding retained_intron MGP_C3HHeJ_T0039216.1 MGP_C3HHeJ_G0021084.1 mouse_genomes_project 14 49571616 49576707 - Jph4 protein_coding retained_intron MGP_C3HHeJ_T0011276.1 MGP_C3HHeJ_G0009409.1 mouse_genomes_project 14 33892694 33892873 - Gm22726 misc_RNA misc_RNA MGP_C3HHeJ_T0098927.1 MGP_C3HHeJ_G0037121.1 mouse_genomes_project 14 42948334 42948454 - Gm23470 snRNA snRNA MGP_C3HHeJ_T0038408.1 MGP_C3HHeJ_G0020845.1 mouse_genomes_project 14 24110709 24126037 + MGP_C3HHeJ_P0038408 Itih4 protein_coding protein_coding MGP_C3HHeJ_T0038409.1 MGP_C3HHeJ_G0020845.1 mouse_genomes_project 14 24110735 24125900 + MGP_C3HHeJ_P0038409 Itih4 protein_coding protein_coding MGP_C3HHeJ_T0038410.1 MGP_C3HHeJ_G0020845.1 mouse_genomes_project 14 24110735 24126004 + MGP_C3HHeJ_P0038410 Itih4 protein_coding protein_coding MGP_C3HHeJ_T0038411.1 MGP_C3HHeJ_G0020845.1 mouse_genomes_project 14 24110754 24125902 + MGP_C3HHeJ_P0038411 Itih4 protein_coding protein_coding MGP_C3HHeJ_T0038412.1 MGP_C3HHeJ_G0020845.1 mouse_genomes_project 14 24123286 24125905 + Itih4 protein_coding retained_intron MGP_C3HHeJ_T0002537.1 MGP_C3HHeJ_G0002447.1 mouse_genomes_project 14 48564642 48564696 + TR_J_pseudogene TR_J_pseudogene MGP_C3HHeJ_T0039192.1 MGP_C3HHeJ_G0021080.1 mouse_genomes_project 14 49474548 49483149 + MGP_C3HHeJ_P0039192 Ngdn protein_coding protein_coding MGP_C3HHeJ_T0017154.1 MGP_C3HHeJ_G0015028.1 mouse_genomes_project 14 12369775 12371135 + processed_transcript processed_transcript MGP_C3HHeJ_T0038736.1 MGP_C3HHeJ_G0020943.1 mouse_genomes_project 14 39223086 39297861 - MGP_C3HHeJ_P0038736 Fermt2 protein_coding protein_coding MGP_C3HHeJ_T0038737.1 MGP_C3HHeJ_G0020943.1 mouse_genomes_project 14 39235375 39245078 - MGP_C3HHeJ_P0038737 Fermt2 protein_coding protein_coding MGP_C3HHeJ_T0038738.1 MGP_C3HHeJ_G0020943.1 mouse_genomes_project 14 39242500 39297707 - MGP_C3HHeJ_P0038738 Fermt2 protein_coding protein_coding MGP_C3HHeJ_T0038739.1 MGP_C3HHeJ_G0020943.1 mouse_genomes_project 14 39272560 39297529 - Fermt2 protein_coding processed_transcript MGP_C3HHeJ_T0039715.1 MGP_C3HHeJ_G0021270.1 mouse_genomes_project 14 64951659 64954372 + MGP_C3HHeJ_P0039715 Egr3 protein_coding protein_coding MGP_C3HHeJ_T0006648.1 MGP_C3HHeJ_G0005486.1 mouse_genomes_project 14 111607063 111610912 + Mir17hg lincRNA lincRNA MGP_C3HHeJ_T0098040.1 MGP_C3HHeJ_G0036252.1 mouse_genomes_project 14 70786481 70786573 - Gm24876 rRNA rRNA MGP_C3HHeJ_T0038881.1 MGP_C3HHeJ_G0020985.1 mouse_genomes_project 14 44458731 44565290 + MGP_C3HHeJ_P0038881 protein_coding protein_coding MGP_C3HHeJ_T0003508.1 MGP_C3HHeJ_G0003185.1 mouse_genomes_project 14 67542128 67555711 + Gm16549 antisense antisense MGP_C3HHeJ_T0038357.1 MGP_C3HHeJ_G0020832.1 mouse_genomes_project 14 22180238 22195660 + MGP_C3HHeJ_P0038357 Lrtm1 protein_coding protein_coding MGP_C3HHeJ_T0011283.1 MGP_C3HHeJ_G0009416.1 mouse_genomes_project 14 56422754 56423010 + Gm27928 misc_RNA misc_RNA MGP_C3HHeJ_T0038595.1 MGP_C3HHeJ_G0020884.1 mouse_genomes_project 14 25960231 25986972 - MGP_C3HHeJ_P0038595 3425401B19Rik protein_coding protein_coding MGP_C3HHeJ_T0012896.1 MGP_C3HHeJ_G0011000.1 mouse_genomes_project 14 69743722 69757426 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002585.1 MGP_C3HHeJ_G0002485.1 mouse_genomes_project 14 47862686 47863217 + MGP_C3HHeJ_P0002585 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002506.1 MGP_C3HHeJ_G0002418.1 mouse_genomes_project 14 48610330 48610391 + MGP_C3HHeJ_P0002506 Traj19 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038883.1 MGP_C3HHeJ_G0020987.1 mouse_genomes_project 14 44488401 44489337 + MGP_C3HHeJ_P0038883 Olfr740 protein_coding protein_coding MGP_C3HHeJ_T0100185.1 MGP_C3HHeJ_G0038379.1 mouse_genomes_project 14 27471767 27471856 + Gm24998 snoRNA snoRNA MGP_C3HHeJ_T0039196.1 MGP_C3HHeJ_G0021082.1 mouse_genomes_project 14 49518876 49552451 - MGP_C3HHeJ_P0039196 Zfhx2 protein_coding protein_coding MGP_C3HHeJ_T0039197.1 MGP_C3HHeJ_G0021082.1 mouse_genomes_project 14 49524817 49532361 - Zfhx2 protein_coding retained_intron MGP_C3HHeJ_T0039198.1 MGP_C3HHeJ_G0021082.1 mouse_genomes_project 14 49534698 49540579 - Zfhx2 protein_coding retained_intron MGP_C3HHeJ_T0039199.1 MGP_C3HHeJ_G0021082.1 mouse_genomes_project 14 49549698 49552169 - Zfhx2 protein_coding retained_intron MGP_C3HHeJ_T0039440.1 MGP_C3HHeJ_G0021161.1 mouse_genomes_project 14 53820291 53833261 - MGP_C3HHeJ_P0039440 Gm5142 protein_coding protein_coding MGP_C3HHeJ_T0098965.1 MGP_C3HHeJ_G0037159.1 mouse_genomes_project 14 117572648 117572732 + Gm25781 snRNA snRNA MGP_C3HHeJ_T0098923.1 MGP_C3HHeJ_G0037117.1 mouse_genomes_project 14 34000604 34000711 + Gm24388 snRNA snRNA MGP_C3HHeJ_T0038666.1 MGP_C3HHeJ_G0020914.1 mouse_genomes_project 14 28086516 28164842 + MGP_C3HHeJ_P0038666 Wapl protein_coding protein_coding MGP_C3HHeJ_T0038667.1 MGP_C3HHeJ_G0020914.1 mouse_genomes_project 14 28086552 28162656 + MGP_C3HHeJ_P0038667 Wapl protein_coding protein_coding MGP_C3HHeJ_T0038668.1 MGP_C3HHeJ_G0020914.1 mouse_genomes_project 14 28086710 28162751 + MGP_C3HHeJ_P0038668 Wapl protein_coding protein_coding MGP_C3HHeJ_T0038669.1 MGP_C3HHeJ_G0020914.1 mouse_genomes_project 14 28107245 28163016 + Wapl protein_coding processed_transcript MGP_C3HHeJ_T0038670.1 MGP_C3HHeJ_G0020914.1 mouse_genomes_project 14 28141789 28163018 + MGP_C3HHeJ_P0038670 Wapl protein_coding protein_coding MGP_C3HHeJ_T0038671.1 MGP_C3HHeJ_G0020914.1 mouse_genomes_project 14 28153409 28157810 + MGP_C3HHeJ_P0038671 Wapl protein_coding protein_coding MGP_C3HHeJ_T0039862.1 MGP_C3HHeJ_G0021317.1 mouse_genomes_project 14 70887079 70891636 + MGP_C3HHeJ_P0039862 Tpt1 protein_coding protein_coding MGP_C3HHeJ_T0039863.1 MGP_C3HHeJ_G0021317.1 mouse_genomes_project 14 70887318 70887956 + Tpt1 protein_coding retained_intron MGP_C3HHeJ_T0038033.1 MGP_C3HHeJ_G0020740.1 mouse_genomes_project 14 6579908 6676371 + MGP_C3HHeJ_P0038033 Atxn7 protein_coding protein_coding MGP_C3HHeJ_T0038034.1 MGP_C3HHeJ_G0020740.1 mouse_genomes_project 14 6580724 6672452 + MGP_C3HHeJ_P0038034 Atxn7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038369.1 MGP_C3HHeJ_G0020837.1 mouse_genomes_project 14 23226971 23558678 - MGP_C3HHeJ_P0038369 Cacna1d protein_coding protein_coding MGP_C3HHeJ_T0038370.1 MGP_C3HHeJ_G0020837.1 mouse_genomes_project 14 23226971 23699555 - MGP_C3HHeJ_P0038370 Cacna1d protein_coding protein_coding MGP_C3HHeJ_T0038371.1 MGP_C3HHeJ_G0020837.1 mouse_genomes_project 14 23255996 23558314 - MGP_C3HHeJ_P0038371 Cacna1d protein_coding unknown_likely_coding MGP_C3HHeJ_T0098960.1 MGP_C3HHeJ_G0037154.1 mouse_genomes_project 14 106783735 106783842 - Gm23242 snRNA snRNA MGP_C3HHeJ_T0100196.1 MGP_C3HHeJ_G0038390.1 mouse_genomes_project 14 53283493 53283626 - Gm25614 snoRNA snoRNA MGP_C3HHeJ_T0039591.1 MGP_C3HHeJ_G0021223.1 mouse_genomes_project 14 60430061 60492659 - MGP_C3HHeJ_P0039591 Elp3 protein_coding protein_coding MGP_C3HHeJ_T0006645.1 MGP_C3HHeJ_G0005484.1 mouse_genomes_project 14 98954241 98958550 + Gm26778 lincRNA lincRNA MGP_C3HHeJ_T0098929.1 MGP_C3HHeJ_G0037123.1 mouse_genomes_project 14 43754427 43754513 + Gm22989 snRNA snRNA MGP_C3HHeJ_T0039642.1 MGP_C3HHeJ_G0021239.1 mouse_genomes_project 14 61789022 61799211 + MGP_C3HHeJ_P0039642 Gm10032 protein_coding protein_coding MGP_C3HHeJ_T0039820.1 MGP_C3HHeJ_G0021300.1 mouse_genomes_project 14 68456867 68465365 + MGP_C3HHeJ_P0039820 Med4 protein_coding protein_coding MGP_C3HHeJ_T0002472.1 MGP_C3HHeJ_G0002386.1 mouse_genomes_project 14 48571438 48571504 + MGP_C3HHeJ_P0002472 Traj53 TR_J_gene TR_J_gene MGP_C3HHeJ_T0003483.1 MGP_C3HHeJ_G0003168.1 mouse_genomes_project 14 49533216 49536004 + Zfhx2os antisense antisense MGP_C3HHeJ_T0012867.1 MGP_C3HHeJ_G0010971.1 mouse_genomes_project 14 39644030 39644460 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003479.1 MGP_C3HHeJ_G0003165.1 mouse_genomes_project 14 49427983 49428895 + Mhrt antisense antisense MGP_C3HHeJ_T0003480.1 MGP_C3HHeJ_G0003165.1 mouse_genomes_project 14 49428092 49433670 + Mhrt antisense antisense MGP_C3HHeJ_T0039997.1 MGP_C3HHeJ_G0021368.1 mouse_genomes_project 14 98952602 98958659 - MGP_C3HHeJ_P0039997 Kctd12 protein_coding protein_coding MGP_C3HHeJ_T0039998.1 MGP_C3HHeJ_G0021368.1 mouse_genomes_project 14 98953558 98957573 - Kctd12 protein_coding processed_transcript MGP_C3HHeJ_T0039908.1 MGP_C3HHeJ_G0021336.1 mouse_genomes_project 14 74442653 74457830 - MGP_C3HHeJ_P0039908 Rgcc protein_coding protein_coding MGP_C3HHeJ_T0002496.1 MGP_C3HHeJ_G0002408.1 mouse_genomes_project 14 48600774 48600834 + MGP_C3HHeJ_P0002496 Traj29 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039561.1 MGP_C3HHeJ_G0021209.1 mouse_genomes_project 14 58827038 58852193 - MGP_C3HHeJ_P0039561 4930578I06Rik protein_coding protein_coding MGP_C3HHeJ_T0012876.1 MGP_C3HHeJ_G0010980.1 mouse_genomes_project 14 46786467 46787035 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038896.1 MGP_C3HHeJ_G0020999.1 mouse_genomes_project 14 44965960 44967827 - MGP_C3HHeJ_P0038896 Klhl33 protein_coding protein_coding MGP_C3HHeJ_T0038887.1 MGP_C3HHeJ_G0020991.1 mouse_genomes_project 14 44726127 44727190 - MGP_C3HHeJ_P0038887 Olfr747 protein_coding protein_coding MGP_C3HHeJ_T0038759.1 MGP_C3HHeJ_G0020948.1 mouse_genomes_project 14 40569424 40581980 - MGP_C3HHeJ_P0038759 Cnih1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012847.1 MGP_C3HHeJ_G0010951.1 mouse_genomes_project 14 11850877 11851289 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100223.1 MGP_C3HHeJ_G0038417.1 mouse_genomes_project 14 100664979 100665096 - Gm25724 snoRNA snoRNA MGP_C3HHeJ_T0002512.1 MGP_C3HHeJ_G0002424.1 mouse_genomes_project 14 48616594 48616652 + MGP_C3HHeJ_P0002512 Traj12 TR_J_gene TR_J_gene MGP_C3HHeJ_T0038631.1 MGP_C3HHeJ_G0020896.1 mouse_genomes_project 14 27316010 27326153 + MGP_C3HHeJ_P0038631 Rbp3 protein_coding protein_coding MGP_C3HHeJ_T0039936.1 MGP_C3HHeJ_G0021350.1 mouse_genomes_project 14 82843254 82946647 + MGP_C3HHeJ_P0039936 Tdrd3 protein_coding protein_coding MGP_C3HHeJ_T0039937.1 MGP_C3HHeJ_G0021350.1 mouse_genomes_project 14 82843254 82976887 + MGP_C3HHeJ_P0039937 Tdrd3 protein_coding protein_coding MGP_C3HHeJ_T0039938.1 MGP_C3HHeJ_G0021350.1 mouse_genomes_project 14 82843281 82976900 + MGP_C3HHeJ_P0039938 Tdrd3 protein_coding protein_coding MGP_C3HHeJ_T0039939.1 MGP_C3HHeJ_G0021350.1 mouse_genomes_project 14 82884747 82912206 + MGP_C3HHeJ_P0039939 Tdrd3 protein_coding protein_coding MGP_C3HHeJ_T0039940.1 MGP_C3HHeJ_G0021350.1 mouse_genomes_project 14 82904130 82918431 + MGP_C3HHeJ_P0039940 Tdrd3 protein_coding protein_coding MGP_C3HHeJ_T0002572.1 MGP_C3HHeJ_G0002474.1 mouse_genomes_project 14 47144206 47144844 + MGP_C3HHeJ_P0002572 Trav15-1-dv6-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002574.1 MGP_C3HHeJ_G0002474.1 mouse_genomes_project 14 47144272 47144844 + MGP_C3HHeJ_P0002574 Trav15-1-dv6-1 TR_V_gene TR_V_gene MGP_C3HHeJ_T0100181.1 MGP_C3HHeJ_G0038375.1 mouse_genomes_project 14 24250964 24251043 - Gm24916 snoRNA snoRNA MGP_C3HHeJ_T0003466.1 MGP_C3HHeJ_G0003153.1 mouse_genomes_project 14 26698622 26702811 - Gm15512 antisense antisense MGP_C3HHeJ_T0039888.1 MGP_C3HHeJ_G0021325.1 mouse_genomes_project 14 72135581 72206315 + MGP_C3HHeJ_P0039888 Ccdc122 protein_coding protein_coding MGP_C3HHeJ_T0039889.1 MGP_C3HHeJ_G0021325.1 mouse_genomes_project 14 72135591 72206315 + MGP_C3HHeJ_P0039889 Ccdc122 protein_coding protein_coding MGP_C3HHeJ_T0039890.1 MGP_C3HHeJ_G0021325.1 mouse_genomes_project 14 72135673 72205806 + MGP_C3HHeJ_P0039890 Ccdc122 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039891.1 MGP_C3HHeJ_G0021325.1 mouse_genomes_project 14 72205085 72206368 + Ccdc122 protein_coding processed_transcript MGP_C3HHeJ_T0011272.1 MGP_C3HHeJ_G0009405.1 mouse_genomes_project 14 24787998 24788300 - Gm24057 misc_RNA misc_RNA MGP_C3HHeJ_T0039686.1 MGP_C3HHeJ_G0021257.1 mouse_genomes_project 14 64267727 64271752 + MGP_C3HHeJ_P0039686 Nkx3-1 protein_coding protein_coding MGP_C3HHeJ_T0039754.1 MGP_C3HHeJ_G0021282.1 mouse_genomes_project 14 65416872 65420013 - MGP_C3HHeJ_P0039754 Sftpc protein_coding protein_coding MGP_C3HHeJ_T0000898.1 MGP_C3HHeJ_G0000838.1 mouse_genomes_project 14 99964464 99966180 + TEC TEC MGP_C3HHeJ_T0003501.1 MGP_C3HHeJ_G0003182.1 mouse_genomes_project 14 64363179 64383895 + Gm27175 antisense antisense MGP_C3HHeJ_T0039502.1 MGP_C3HHeJ_G0021181.1 mouse_genomes_project 14 56052318 56054480 + MGP_C3HHeJ_P0039502 Arl11 protein_coding protein_coding MGP_C3HHeJ_T0012897.1 MGP_C3HHeJ_G0011001.1 mouse_genomes_project 14 75544531 75545284 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039868.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71485619 71581305 + MGP_C3HHeJ_P0039868 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039869.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71486245 71581305 + MGP_C3HHeJ_P0039869 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039870.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71486772 71487302 + Tsc22d1 protein_coding processed_transcript MGP_C3HHeJ_T0039871.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71489012 71512220 + MGP_C3HHeJ_P0039871 Tsc22d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039872.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71489306 71509591 + MGP_C3HHeJ_P0039872 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039873.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71489309 71510932 + MGP_C3HHeJ_P0039873 Tsc22d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039874.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71489486 71511004 + MGP_C3HHeJ_P0039874 Tsc22d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039875.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71508357 71510974 + Tsc22d1 protein_coding processed_transcript MGP_C3HHeJ_T0039876.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71509524 71510974 + Tsc22d1 protein_coding retained_intron MGP_C3HHeJ_T0039877.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71548106 71580473 + MGP_C3HHeJ_P0039877 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039878.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71561429 71580541 + MGP_C3HHeJ_P0039878 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039879.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71562106 71580713 + MGP_C3HHeJ_P0039879 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039880.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71577756 71581306 + MGP_C3HHeJ_P0039880 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039881.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71578020 71581308 + MGP_C3HHeJ_P0039881 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039882.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71578072 71579280 + MGP_C3HHeJ_P0039882 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0039883.1 MGP_C3HHeJ_G0021322.1 mouse_genomes_project 14 71578640 71580545 + MGP_C3HHeJ_P0039883 Tsc22d1 protein_coding protein_coding MGP_C3HHeJ_T0100221.1 MGP_C3HHeJ_G0038415.1 mouse_genomes_project 14 97203172 97203308 + Gm26173 snoRNA snoRNA MGP_C3HHeJ_T0039229.1 MGP_C3HHeJ_G0021089.1 mouse_genomes_project 14 49996964 50002137 - MGP_C3HHeJ_P0039229 Nrl protein_coding protein_coding MGP_C3HHeJ_T0039230.1 MGP_C3HHeJ_G0021089.1 mouse_genomes_project 14 49997514 50002927 - MGP_C3HHeJ_P0039230 Nrl protein_coding protein_coding MGP_C3HHeJ_T0039231.1 MGP_C3HHeJ_G0021089.1 mouse_genomes_project 14 49997514 50002911 - MGP_C3HHeJ_P0039231 Nrl protein_coding protein_coding MGP_C3HHeJ_T0098948.1 MGP_C3HHeJ_G0037142.1 mouse_genomes_project 14 88772766 88772928 - Gm23509 snRNA snRNA MGP_C3HHeJ_T0009914.1 MGP_C3HHeJ_G0008047.1 mouse_genomes_project 14 62103908 62104026 + Gm27647 miRNA miRNA MGP_C3HHeJ_T0039324.1 MGP_C3HHeJ_G0021104.1 mouse_genomes_project 14 50143185 50152794 - MGP_C3HHeJ_P0039324 Nedd8 protein_coding protein_coding MGP_C3HHeJ_T0039325.1 MGP_C3HHeJ_G0021104.1 mouse_genomes_project 14 50143187 50152827 - MGP_C3HHeJ_P0039325 Nedd8 protein_coding protein_coding MGP_C3HHeJ_T0038967.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231231 46233981 + MGP_C3HHeJ_P0038967 Arhgef40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038968.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231345 46251816 + MGP_C3HHeJ_P0038968 Arhgef40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038969.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231350 46252412 + MGP_C3HHeJ_P0038969 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038970.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231356 46237203 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038971.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231376 46251783 + MGP_C3HHeJ_P0038971 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038972.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231398 46251794 + MGP_C3HHeJ_P0038972 Arhgef40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038973.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231421 46251788 + MGP_C3HHeJ_P0038973 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038974.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231422 46251784 + MGP_C3HHeJ_P0038974 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038975.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231424 46232584 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038976.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231427 46235664 + MGP_C3HHeJ_P0038976 Arhgef40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038977.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231443 46251784 + MGP_C3HHeJ_P0038977 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038978.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231478 46238193 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038979.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46231483 46235316 + MGP_C3HHeJ_P0038979 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038980.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46238304 46240545 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038981.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46240541 46243499 + MGP_C3HHeJ_P0038981 Arhgef40 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038982.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46241719 46242687 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038983.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46244089 46251790 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038984.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46248496 46251784 + MGP_C3HHeJ_P0038984 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038985.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46248524 46250123 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038986.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46248571 46251787 + MGP_C3HHeJ_P0038986 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038987.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46249730 46251181 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038988.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46250241 46251702 + MGP_C3HHeJ_P0038988 Arhgef40 protein_coding protein_coding MGP_C3HHeJ_T0038989.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46250647 46251531 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038990.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46250661 46251473 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038991.1 MGP_C3HHeJ_G0021027.1 mouse_genomes_project 14 46250748 46251472 + Arhgef40 protein_coding retained_intron MGP_C3HHeJ_T0038868.1 MGP_C3HHeJ_G0020975.1 mouse_genomes_project 14 44158089 44159061 - MGP_C3HHeJ_P0038868 Olfr729 protein_coding protein_coding MGP_C3HHeJ_T0006622.1 MGP_C3HHeJ_G0005467.1 mouse_genomes_project 14 52636466 52640881 + 3110083C13Rik lincRNA lincRNA MGP_C3HHeJ_T0040036.1 MGP_C3HHeJ_G0021380.1 mouse_genomes_project 14 102008403 102016676 - MGP_C3HHeJ_P0040036 Spry2 protein_coding protein_coding MGP_C3HHeJ_T0038114.1 MGP_C3HHeJ_G0020768.1 mouse_genomes_project 14 13257179 13278554 + MGP_C3HHeJ_P0038114 Fam149b protein_coding protein_coding MGP_C3HHeJ_T0038115.1 MGP_C3HHeJ_G0020768.1 mouse_genomes_project 14 13257179 13294171 + MGP_C3HHeJ_P0038115 Fam149b protein_coding protein_coding MGP_C3HHeJ_T0038116.1 MGP_C3HHeJ_G0020768.1 mouse_genomes_project 14 13257179 13294171 + MGP_C3HHeJ_P0038116 Fam149b protein_coding protein_coding MGP_C3HHeJ_T0038117.1 MGP_C3HHeJ_G0020768.1 mouse_genomes_project 14 13257239 13294171 + MGP_C3HHeJ_P0038117 Fam149b protein_coding protein_coding MGP_C3HHeJ_T0003445.1 MGP_C3HHeJ_G0003140.1 mouse_genomes_project 14 6487903 6519768 + Gm11100 antisense antisense MGP_C3HHeJ_T0003446.1 MGP_C3HHeJ_G0003140.1 mouse_genomes_project 14 6501974 6519768 + Gm11100 antisense antisense MGP_C3HHeJ_T0039441.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53859957 53885234 + MGP_C3HHeJ_P0039441 Rcbtb1 protein_coding protein_coding MGP_C3HHeJ_T0039442.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53859976 53910076 + MGP_C3HHeJ_P0039442 Rcbtb1 protein_coding protein_coding MGP_C3HHeJ_T0039443.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53859982 53901782 + MGP_C3HHeJ_P0039443 Rcbtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039444.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53859990 53910076 + MGP_C3HHeJ_P0039444 Rcbtb1 protein_coding protein_coding MGP_C3HHeJ_T0039445.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53860224 53868719 + MGP_C3HHeJ_P0039445 Rcbtb1 protein_coding protein_coding MGP_C3HHeJ_T0039446.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53860231 53884546 + Rcbtb1 protein_coding processed_transcript MGP_C3HHeJ_T0039447.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53860251 53868815 + MGP_C3HHeJ_P0039447 Rcbtb1 protein_coding protein_coding MGP_C3HHeJ_T0039448.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53864362 53891982 + MGP_C3HHeJ_P0039448 Rcbtb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039449.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53878456 53886743 + Rcbtb1 protein_coding processed_transcript MGP_C3HHeJ_T0039450.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53879624 53910070 + MGP_C3HHeJ_P0039450 Rcbtb1 protein_coding protein_coding MGP_C3HHeJ_T0039451.1 MGP_C3HHeJ_G0021162.1 mouse_genomes_project 14 53884607 53886704 + Rcbtb1 protein_coding retained_intron MGP_C3HHeJ_T0098925.1 MGP_C3HHeJ_G0037119.1 mouse_genomes_project 14 42620811 42620918 - Gm25380 snRNA snRNA MGP_C3HHeJ_T0039088.1 MGP_C3HHeJ_G0021049.1 mouse_genomes_project 14 48765030 48768919 + Oxa1l protein_coding retained_intron MGP_C3HHeJ_T0039089.1 MGP_C3HHeJ_G0021049.1 mouse_genomes_project 14 48765030 48775017 + MGP_C3HHeJ_P0039089 Oxa1l protein_coding protein_coding MGP_C3HHeJ_T0039090.1 MGP_C3HHeJ_G0021049.1 mouse_genomes_project 14 48765234 48772379 + Oxa1l protein_coding retained_intron MGP_C3HHeJ_T0017203.1 MGP_C3HHeJ_G0015045.1 mouse_genomes_project 14 112370167 112454580 - Gm20713 processed_transcript processed_transcript MGP_C3HHeJ_T0039473.1 MGP_C3HHeJ_G0021171.1 mouse_genomes_project 14 54805549 54815382 + MGP_C3HHeJ_P0039473 4930563I02Rik protein_coding protein_coding MGP_C3HHeJ_T0039474.1 MGP_C3HHeJ_G0021171.1 mouse_genomes_project 14 54805995 54815392 + MGP_C3HHeJ_P0039474 4930563I02Rik protein_coding protein_coding MGP_C3HHeJ_T0009923.1 MGP_C3HHeJ_G0008056.1 mouse_genomes_project 14 73365047 73365154 - Gm23652 miRNA miRNA MGP_C3HHeJ_T0039547.1 MGP_C3HHeJ_G0021204.1 mouse_genomes_project 14 58326172 58348404 - MGP_C3HHeJ_P0039547 Tdh protein_coding protein_coding MGP_C3HHeJ_T0039548.1 MGP_C3HHeJ_G0021204.1 mouse_genomes_project 14 58326434 58333960 - MGP_C3HHeJ_P0039548 Tdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039549.1 MGP_C3HHeJ_G0021204.1 mouse_genomes_project 14 58326434 58333960 - MGP_C3HHeJ_P0039549 Tdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039550.1 MGP_C3HHeJ_G0021204.1 mouse_genomes_project 14 58326434 58333960 - MGP_C3HHeJ_P0039550 Tdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039551.1 MGP_C3HHeJ_G0021204.1 mouse_genomes_project 14 58329319 58330840 - Tdh protein_coding retained_intron MGP_C3HHeJ_T0039552.1 MGP_C3HHeJ_G0021204.1 mouse_genomes_project 14 58337616 58348068 - Tdh protein_coding processed_transcript MGP_C3HHeJ_T0038254.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18490241 18570680 + Zmiz1 protein_coding retained_intron MGP_C3HHeJ_T0038255.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18490280 18700216 + MGP_C3HHeJ_P0038255 Zmiz1 protein_coding protein_coding MGP_C3HHeJ_T0038256.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18490323 18698192 + MGP_C3HHeJ_P0038256 Zmiz1 protein_coding protein_coding MGP_C3HHeJ_T0038257.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18490348 18682370 + Zmiz1 protein_coding retained_intron MGP_C3HHeJ_T0038258.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18490611 18604144 + Zmiz1 protein_coding processed_transcript MGP_C3HHeJ_T0038259.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18639774 18676426 + Zmiz1 protein_coding processed_transcript MGP_C3HHeJ_T0038260.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18640255 18678529 + MGP_C3HHeJ_P0038260 Zmiz1 protein_coding protein_coding MGP_C3HHeJ_T0038261.1 MGP_C3HHeJ_G0020801.1 mouse_genomes_project 14 18690303 18691879 + Zmiz1 protein_coding retained_intron MGP_C3HHeJ_T0002586.1 MGP_C3HHeJ_G0002486.1 mouse_genomes_project 14 47891679 47892251 + MGP_C3HHeJ_P0002586 TR_V_gene TR_V_gene MGP_C3HHeJ_T0009933.1 MGP_C3HHeJ_G0008066.1 mouse_genomes_project 14 111608035 111608131 + Mir18 miRNA miRNA MGP_C3HHeJ_T0009901.1 MGP_C3HHeJ_G0008034.1 mouse_genomes_project 14 49072563 49072625 - Mir6948 miRNA miRNA MGP_C3HHeJ_T0038672.1 MGP_C3HHeJ_G0020915.1 mouse_genomes_project 14 28244954 29020169 + MGP_C3HHeJ_P0038672 Grid1 protein_coding protein_coding MGP_C3HHeJ_T0038673.1 MGP_C3HHeJ_G0020915.1 mouse_genomes_project 14 29001913 29017916 + Grid1 protein_coding processed_transcript MGP_C3HHeJ_T0017160.1 MGP_C3HHeJ_G0015031.1 mouse_genomes_project 14 38696155 38702246 - 4930431P03Rik processed_transcript retained_intron MGP_C3HHeJ_T0017161.1 MGP_C3HHeJ_G0015031.1 mouse_genomes_project 14 38697358 38702246 - 4930431P03Rik processed_transcript antisense MGP_C3HHeJ_T0009928.1 MGP_C3HHeJ_G0008061.1 mouse_genomes_project 14 99647119 99647224 - Gm22877 miRNA miRNA MGP_C3HHeJ_T0038039.1 MGP_C3HHeJ_G0020742.1 mouse_genomes_project 14 6733215 6734238 - MGP_C3HHeJ_P0038039 Olfr720 protein_coding protein_coding MGP_C3HHeJ_T0038040.1 MGP_C3HHeJ_G0020742.1 mouse_genomes_project 14 6733817 6744816 - MGP_C3HHeJ_P0038040 Olfr720 protein_coding protein_coding MGP_C3HHeJ_T0038589.1 MGP_C3HHeJ_G0020881.1 mouse_genomes_project 14 25757395 25759808 - MGP_C3HHeJ_P0038589 Slc18a3 protein_coding protein_coding MGP_C3HHeJ_T0038031.1 MGP_C3HHeJ_G0020738.1 mouse_genomes_project 14 6374991 6483950 - MGP_C3HHeJ_P0038031 Gm281 protein_coding protein_coding MGP_C3HHeJ_T0039401.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52180205 52268676 - MGP_C3HHeJ_P0039401 Xpo4 protein_coding protein_coding MGP_C3HHeJ_T0039402.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52181442 52268249 - MGP_C3HHeJ_P0039402 Xpo4 protein_coding protein_coding MGP_C3HHeJ_T0039403.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52196355 52268238 - MGP_C3HHeJ_P0039403 Xpo4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039404.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52230307 52268202 - MGP_C3HHeJ_P0039404 Xpo4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039405.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52242680 52268210 - Xpo4 protein_coding processed_transcript MGP_C3HHeJ_T0039406.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52242686 52268481 - Xpo4 protein_coding retained_intron MGP_C3HHeJ_T0039407.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52242701 52268213 - Xpo4 protein_coding retained_intron MGP_C3HHeJ_T0039408.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52242930 52268676 - MGP_C3HHeJ_P0039408 Xpo4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039410.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52243417 52249559 - Xpo4 protein_coding retained_intron MGP_C3HHeJ_T0039411.1 MGP_C3HHeJ_G0021152.1 mouse_genomes_project 14 52248863 52268235 - Xpo4 protein_coding retained_intron MGP_C3HHeJ_T0040126.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119809188 119873553 - MGP_C3HHeJ_P0040126 Tmtc4 protein_coding protein_coding MGP_C3HHeJ_T0040127.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119809195 119873487 - MGP_C3HHeJ_P0040127 Tmtc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040128.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119809948 119873412 - MGP_C3HHeJ_P0040128 Tmtc4 protein_coding protein_coding MGP_C3HHeJ_T0040129.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119809977 119873412 - MGP_C3HHeJ_P0040129 Tmtc4 protein_coding protein_coding MGP_C3HHeJ_T0040130.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119810123 119826249 - Tmtc4 protein_coding processed_transcript MGP_C3HHeJ_T0040131.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119815023 119819351 - Tmtc4 protein_coding retained_intron MGP_C3HHeJ_T0040132.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119822702 119873510 - Tmtc4 protein_coding retained_intron MGP_C3HHeJ_T0040133.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119834964 119873545 - MGP_C3HHeJ_P0040133 Tmtc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040134.1 MGP_C3HHeJ_G0021419.1 mouse_genomes_project 14 119863696 119873439 - Tmtc4 protein_coding processed_transcript MGP_C3HHeJ_T0039855.1 MGP_C3HHeJ_G0021313.1 mouse_genomes_project 14 70618474 70627175 - MGP_C3HHeJ_P0039855 Spert protein_coding protein_coding MGP_C3HHeJ_T0039856.1 MGP_C3HHeJ_G0021313.1 mouse_genomes_project 14 70618474 70628306 - MGP_C3HHeJ_P0039856 Spert protein_coding protein_coding MGP_C3HHeJ_T0039857.1 MGP_C3HHeJ_G0021313.1 mouse_genomes_project 14 70618474 70628306 - MGP_C3HHeJ_P0039857 Spert protein_coding protein_coding MGP_C3HHeJ_T0039858.1 MGP_C3HHeJ_G0021313.1 mouse_genomes_project 14 70618474 70627175 - MGP_C3HHeJ_P0039858 Spert protein_coding protein_coding MGP_C3HHeJ_T0098951.1 MGP_C3HHeJ_G0037145.1 mouse_genomes_project 14 94437124 94437231 + Gm26139 snRNA snRNA MGP_C3HHeJ_T0038601.1 MGP_C3HHeJ_G0020889.1 mouse_genomes_project 14 26306073 26329968 + MGP_C3HHeJ_P0038601 Lrrc18 protein_coding protein_coding MGP_C3HHeJ_T0038602.1 MGP_C3HHeJ_G0020889.1 mouse_genomes_project 14 26306089 26324072 + MGP_C3HHeJ_P0038602 Lrrc18 protein_coding protein_coding MGP_C3HHeJ_T0038603.1 MGP_C3HHeJ_G0020889.1 mouse_genomes_project 14 26306094 26323354 + MGP_C3HHeJ_P0038603 Lrrc18 protein_coding protein_coding MGP_C3HHeJ_T0038604.1 MGP_C3HHeJ_G0020889.1 mouse_genomes_project 14 26306137 26323515 + MGP_C3HHeJ_P0038604 Lrrc18 protein_coding protein_coding MGP_C3HHeJ_T0038605.1 MGP_C3HHeJ_G0020889.1 mouse_genomes_project 14 26306149 26328831 + MGP_C3HHeJ_P0038605 Lrrc18 protein_coding protein_coding MGP_C3HHeJ_T0038606.1 MGP_C3HHeJ_G0020889.1 mouse_genomes_project 14 26310002 26323135 + Lrrc18 protein_coding processed_transcript MGP_C3HHeJ_T0039457.1 MGP_C3HHeJ_G0021166.1 mouse_genomes_project 14 54090405 54133381 - MGP_C3HHeJ_P0039457 Setdb2 protein_coding protein_coding MGP_C3HHeJ_T0039458.1 MGP_C3HHeJ_G0021166.1 mouse_genomes_project 14 54090407 54133374 - MGP_C3HHeJ_P0039458 Setdb2 protein_coding protein_coding MGP_C3HHeJ_T0039459.1 MGP_C3HHeJ_G0021166.1 mouse_genomes_project 14 54090660 54097534 - Setdb2 protein_coding retained_intron MGP_C3HHeJ_T0039460.1 MGP_C3HHeJ_G0021166.1 mouse_genomes_project 14 54114524 54133372 - MGP_C3HHeJ_P0039460 Setdb2 protein_coding protein_coding MGP_C3HHeJ_T0039461.1 MGP_C3HHeJ_G0021166.1 mouse_genomes_project 14 54123642 54133370 - Setdb2 protein_coding processed_transcript MGP_C3HHeJ_T0038212.1 MGP_C3HHeJ_G0020793.1 mouse_genomes_project 14 14798253 14800076 - MGP_C3HHeJ_P0038212 Comtd1 protein_coding protein_coding MGP_C3HHeJ_T0038213.1 MGP_C3HHeJ_G0020793.1 mouse_genomes_project 14 14798382 14800098 - Comtd1 protein_coding retained_intron MGP_C3HHeJ_T0038214.1 MGP_C3HHeJ_G0020793.1 mouse_genomes_project 14 14798388 14799014 - Comtd1 protein_coding retained_intron MGP_C3HHeJ_T0039159.1 MGP_C3HHeJ_G0021068.1 mouse_genomes_project 14 49297805 49305591 - MGP_C3HHeJ_P0039159 Homez protein_coding protein_coding MGP_C3HHeJ_T0039160.1 MGP_C3HHeJ_G0021068.1 mouse_genomes_project 14 49298860 49312813 - MGP_C3HHeJ_P0039160 Homez protein_coding protein_coding MGP_C3HHeJ_T0039161.1 MGP_C3HHeJ_G0021068.1 mouse_genomes_project 14 49300646 49302288 - MGP_C3HHeJ_P0039161 Homez protein_coding protein_coding MGP_C3HHeJ_T0039162.1 MGP_C3HHeJ_G0021068.1 mouse_genomes_project 14 49302999 49321060 - MGP_C3HHeJ_P0039162 Homez protein_coding protein_coding MGP_C3HHeJ_T0039125.1 MGP_C3HHeJ_G0021059.1 mouse_genomes_project 14 49042915 49047383 - MGP_C3HHeJ_P0039125 Psmb5 protein_coding protein_coding MGP_C3HHeJ_T0017156.1 MGP_C3HHeJ_G0015029.1 mouse_genomes_project 14 14798781 14802238 + A430057M04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017157.1 MGP_C3HHeJ_G0015029.1 mouse_genomes_project 14 14799650 14808130 + A430057M04Rik processed_transcript processed_transcript MGP_C3HHeJ_T0039462.1 MGP_C3HHeJ_G0021167.1 mouse_genomes_project 14 54133477 54255524 + MGP_C3HHeJ_P0039462 Cab39l protein_coding protein_coding MGP_C3HHeJ_T0000875.1 MGP_C3HHeJ_G0000815.1 mouse_genomes_project 14 14949288 14952957 + TEC TEC MGP_C3HHeJ_T0002656.1 MGP_C3HHeJ_G0002538.1 mouse_genomes_project 14 47507789 47508058 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0038286.1 MGP_C3HHeJ_G0020812.1 mouse_genomes_project 14 18997974 19024403 + MGP_C3HHeJ_P0038286 Cphx1 protein_coding protein_coding MGP_C3HHeJ_T0038289.1 MGP_C3HHeJ_G0020812.1 mouse_genomes_project 14 18998026 19303764 + MGP_C3HHeJ_P0038289 Cphx1 protein_coding protein_coding MGP_C3HHeJ_T0038292.1 MGP_C3HHeJ_G0020812.1 mouse_genomes_project 14 19299222 19302630 + Cphx1 protein_coding retained_intron MGP_C3HHeJ_T0097861.1 MGP_C3HHeJ_G0036073.1 mouse_genomes_project 14 13967710 13977702 - pseudogene pseudogene MGP_C3HHeJ_T0039693.1 MGP_C3HHeJ_G0021262.1 mouse_genomes_project 14 64415711 64445642 + MGP_C3HHeJ_P0039693 Gm21685 protein_coding protein_coding MGP_C3HHeJ_T0039695.1 MGP_C3HHeJ_G0021262.1 mouse_genomes_project 14 64415727 64428870 + Gm21685 protein_coding retained_intron MGP_C3HHeJ_T0039696.1 MGP_C3HHeJ_G0021262.1 mouse_genomes_project 14 64415735 64428871 + MGP_C3HHeJ_P0039696 Gm21685 protein_coding protein_coding MGP_C3HHeJ_T0039697.1 MGP_C3HHeJ_G0021262.1 mouse_genomes_project 14 64415753 64426102 + Gm21685 protein_coding processed_transcript MGP_C3HHeJ_T0039699.1 MGP_C3HHeJ_G0021262.1 mouse_genomes_project 14 64440930 64444588 + Gm21685 protein_coding retained_intron MGP_C3HHeJ_T0039545.1 MGP_C3HHeJ_G0021203.1 mouse_genomes_project 14 58270071 58300118 + MGP_C3HHeJ_P0039545 Fam167a protein_coding protein_coding MGP_C3HHeJ_T0039546.1 MGP_C3HHeJ_G0021203.1 mouse_genomes_project 14 58270086 58275948 + Fam167a protein_coding retained_intron MGP_C3HHeJ_T0039767.1 MGP_C3HHeJ_G0021289.1 mouse_genomes_project 14 65540302 65546366 - MGP_C3HHeJ_P0039767 Fgf17 protein_coding protein_coding MGP_C3HHeJ_T0098946.1 MGP_C3HHeJ_G0037140.1 mouse_genomes_project 14 81810565 81810705 + Gm25115 snRNA snRNA MGP_C3HHeJ_T0002575.1 MGP_C3HHeJ_G0002476.1 mouse_genomes_project 14 47282496 47283004 + MGP_C3HHeJ_P0002575 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039980.1 MGP_C3HHeJ_G0021366.1 mouse_genomes_project 14 97675001 97675436 - MGP_C3HHeJ_P0039980 Gm9922 protein_coding protein_coding MGP_C3HHeJ_T0039061.1 MGP_C3HHeJ_G0021040.1 mouse_genomes_project 14 46621037 46621979 - MGP_C3HHeJ_P0039061 Olfr1512 protein_coding protein_coding MGP_C3HHeJ_T0038082.1 MGP_C3HHeJ_G0020757.1 mouse_genomes_project 14 10975229 11034442 - MGP_C3HHeJ_P0038082 Ube2e1 protein_coding protein_coding MGP_C3HHeJ_T0038083.1 MGP_C3HHeJ_G0020757.1 mouse_genomes_project 14 10977392 11033617 - Ube2e1 protein_coding retained_intron MGP_C3HHeJ_T0038084.1 MGP_C3HHeJ_G0020757.1 mouse_genomes_project 14 10977692 11029944 - Ube2e1 protein_coding processed_transcript MGP_C3HHeJ_T0038085.1 MGP_C3HHeJ_G0020757.1 mouse_genomes_project 14 11026578 11033680 - Ube2e1 protein_coding retained_intron MGP_C3HHeJ_T0039587.1 MGP_C3HHeJ_G0021220.1 mouse_genomes_project 14 60164055 60212068 + MGP_C3HHeJ_P0039587 Fbxo16 protein_coding protein_coding MGP_C3HHeJ_T0039588.1 MGP_C3HHeJ_G0021220.1 mouse_genomes_project 14 60168091 60212074 + MGP_C3HHeJ_P0039588 Fbxo16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009884.1 MGP_C3HHeJ_G0008017.1 mouse_genomes_project 14 3679053 3679138 + Mir5124b miRNA miRNA MGP_C3HHeJ_T0003443.1 MGP_C3HHeJ_G0003139.1 mouse_genomes_project 14 4402395 4419372 - Gm3848 antisense antisense MGP_C3HHeJ_T0003444.1 MGP_C3HHeJ_G0003139.1 mouse_genomes_project 14 4418360 4419357 - Gm3848 antisense antisense MGP_C3HHeJ_T0039892.1 MGP_C3HHeJ_G0021326.1 mouse_genomes_project 14 72249834 72823775 + MGP_C3HHeJ_P0039892 Enox1 protein_coding protein_coding MGP_C3HHeJ_T0039393.1 MGP_C3HHeJ_G0021148.1 mouse_genomes_project 14 51853498 51984476 - MGP_C3HHeJ_P0039393 Cryl1 protein_coding protein_coding MGP_C3HHeJ_T0038252.1 MGP_C3HHeJ_G0020800.1 mouse_genomes_project 14 17547358 17552856 + MGP_C3HHeJ_P0038252 Rps24 protein_coding protein_coding MGP_C3HHeJ_T0038253.1 MGP_C3HHeJ_G0020800.1 mouse_genomes_project 14 17547358 17552142 + MGP_C3HHeJ_P0038253 Rps24 protein_coding protein_coding MGP_C3HHeJ_T0039712.1 MGP_C3HHeJ_G0021267.1 mouse_genomes_project 14 64630832 64646624 + MGP_C3HHeJ_P0039712 Tnfrsf10b protein_coding protein_coding MGP_C3HHeJ_T0098963.1 MGP_C3HHeJ_G0037157.1 mouse_genomes_project 14 111542987 111543093 - Gm24073 snRNA snRNA MGP_C3HHeJ_T0038872.1 MGP_C3HHeJ_G0020979.1 mouse_genomes_project 14 44318083 44319077 - MGP_C3HHeJ_P0038872 Olfr733 protein_coding protein_coding MGP_C3HHeJ_T0038718.1 MGP_C3HHeJ_G0020936.1 mouse_genomes_project 14 38732444 38749696 + MGP_C3HHeJ_P0038718 Ptger2 protein_coding protein_coding MGP_C3HHeJ_T0038237.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17174234 17186470 - MGP_C3HHeJ_P0038237 Dlg5 protein_coding protein_coding MGP_C3HHeJ_T0038238.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17174234 17293030 - MGP_C3HHeJ_P0038238 Dlg5 protein_coding protein_coding MGP_C3HHeJ_T0038239.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17174234 17219582 - MGP_C3HHeJ_P0038239 Dlg5 protein_coding protein_coding MGP_C3HHeJ_T0038240.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17174236 17293030 - MGP_C3HHeJ_P0038240 Dlg5 protein_coding protein_coding MGP_C3HHeJ_T0038241.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17184665 17191546 - MGP_C3HHeJ_P0038241 Dlg5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038242.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17186562 17189046 - Dlg5 protein_coding retained_intron MGP_C3HHeJ_T0038243.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17195307 17198245 - Dlg5 protein_coding retained_intron MGP_C3HHeJ_T0038244.1 MGP_C3HHeJ_G0020797.1 mouse_genomes_project 14 17231891 17291975 - MGP_C3HHeJ_P0038244 Dlg5 protein_coding protein_coding MGP_C3HHeJ_T0100227.1 MGP_C3HHeJ_G0038421.1 mouse_genomes_project 14 104841486 104841604 + Gm24229 snoRNA snoRNA MGP_C3HHeJ_T0038151.1 MGP_C3HHeJ_G0020780.1 mouse_genomes_project 14 13624392 13625783 + MGP_C3HHeJ_P0038151 Chchd1 protein_coding protein_coding MGP_C3HHeJ_T0038491.1 MGP_C3HHeJ_G0020857.1 mouse_genomes_project 14 24453418 24458795 + MGP_C3HHeJ_P0038491 Tnnc1 protein_coding protein_coding MGP_C3HHeJ_T0038492.1 MGP_C3HHeJ_G0020857.1 mouse_genomes_project 14 24453436 24458702 + MGP_C3HHeJ_P0038492 Tnnc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038493.1 MGP_C3HHeJ_G0020857.1 mouse_genomes_project 14 24453438 24456104 + Tnnc1 protein_coding retained_intron MGP_C3HHeJ_T0038709.1 MGP_C3HHeJ_G0020930.1 mouse_genomes_project 14 34682475 34702539 + MGP_C3HHeJ_P0038709 Dydc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038710.1 MGP_C3HHeJ_G0020930.1 mouse_genomes_project 14 34682475 34702546 + MGP_C3HHeJ_P0038710 Dydc1 protein_coding protein_coding MGP_C3HHeJ_T0038711.1 MGP_C3HHeJ_G0020930.1 mouse_genomes_project 14 34682504 34702542 + MGP_C3HHeJ_P0038711 Dydc1 protein_coding protein_coding MGP_C3HHeJ_T0002517.1 MGP_C3HHeJ_G0002429.1 mouse_genomes_project 14 48623943 48624005 + MGP_C3HHeJ_P0002517 Traj5 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039429.1 MGP_C3HHeJ_G0021157.1 mouse_genomes_project 14 52452996 52512390 - MGP_C3HHeJ_P0039429 Zdhhc20 protein_coding protein_coding MGP_C3HHeJ_T0039430.1 MGP_C3HHeJ_G0021157.1 mouse_genomes_project 14 52457920 52512308 - MGP_C3HHeJ_P0039430 Zdhhc20 protein_coding unknown_likely_coding MGP_C3HHeJ_T0009887.1 MGP_C3HHeJ_G0008020.1 mouse_genomes_project 14 14978660 14978773 - Gm27532 miRNA miRNA MGP_C3HHeJ_T0003463.1 MGP_C3HHeJ_G0003150.1 mouse_genomes_project 14 19772632 19773130 + 9930004E17Rik antisense antisense MGP_C3HHeJ_T0038936.1 MGP_C3HHeJ_G0021016.1 mouse_genomes_project 14 45256045 45256804 + MGP_C3HHeJ_P0038936 Rnase2b protein_coding protein_coding MGP_C3HHeJ_T0038329.1 MGP_C3HHeJ_G0020821.1 mouse_genomes_project 14 19795873 19915074 + MGP_C3HHeJ_P0038329 Dnah12 protein_coding protein_coding MGP_C3HHeJ_T0038330.1 MGP_C3HHeJ_G0020821.1 mouse_genomes_project 14 19796045 19988475 + MGP_C3HHeJ_P0038330 Dnah12 protein_coding unknown_likely_coding MGP_C3HHeJ_T0038331.1 MGP_C3HHeJ_G0020821.1 mouse_genomes_project 14 19869446 19872190 + MGP_C3HHeJ_P0038331 Dnah12 protein_coding protein_coding MGP_C3HHeJ_T0038332.1 MGP_C3HHeJ_G0020821.1 mouse_genomes_project 14 19930615 19988544 + MGP_C3HHeJ_P0038332 Dnah12 protein_coding protein_coding MGP_C3HHeJ_T0098045.1 MGP_C3HHeJ_G0036257.1 mouse_genomes_project 14 106500646 106500757 + n-R5s50 rRNA rRNA MGP_C3HHeJ_T0100220.1 MGP_C3HHeJ_G0038414.1 mouse_genomes_project 14 96435216 96435340 - Gm24345 snoRNA snoRNA MGP_C3HHeJ_T0101745.1 MGP_C3HHeJ_G0039710.1 mouse_genomes_project 14 46013262 46013712 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039669.1 MGP_C3HHeJ_G0021247.1 mouse_genomes_project 14 62767448 62791155 + MGP_C3HHeJ_P0039669 Kctd9 protein_coding protein_coding MGP_C3HHeJ_T0039670.1 MGP_C3HHeJ_G0021247.1 mouse_genomes_project 14 62767609 62793803 + MGP_C3HHeJ_P0039670 Kctd9 protein_coding protein_coding MGP_C3HHeJ_T0039671.1 MGP_C3HHeJ_G0021247.1 mouse_genomes_project 14 62767651 62781207 + MGP_C3HHeJ_P0039671 Kctd9 protein_coding protein_coding MGP_C3HHeJ_T0039672.1 MGP_C3HHeJ_G0021247.1 mouse_genomes_project 14 62767796 62793654 + MGP_C3HHeJ_P0039672 Kctd9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039673.1 MGP_C3HHeJ_G0021247.1 mouse_genomes_project 14 62767848 62793655 + MGP_C3HHeJ_P0039673 Kctd9 protein_coding protein_coding MGP_C3HHeJ_T0039840.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70141602 70210860 + MGP_C3HHeJ_P0039840 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039841.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70141660 70159445 + Lcp1 protein_coding processed_transcript MGP_C3HHeJ_T0039842.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70141660 70211930 + MGP_C3HHeJ_P0039842 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039843.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70142000 70211879 + MGP_C3HHeJ_P0039843 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039844.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70142055 70241278 + MGP_C3HHeJ_P0039844 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039845.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70147709 70242324 + MGP_C3HHeJ_P0039845 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039846.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70147852 70211870 + MGP_C3HHeJ_P0039846 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039847.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70186343 70189422 + Lcp1 protein_coding retained_intron MGP_C3HHeJ_T0039848.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70187604 70209558 + Lcp1 protein_coding processed_transcript MGP_C3HHeJ_T0039849.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70201703 70242298 + MGP_C3HHeJ_P0039849 Lcp1 protein_coding protein_coding MGP_C3HHeJ_T0039850.1 MGP_C3HHeJ_G0021309.1 mouse_genomes_project 14 70209315 70210782 + Lcp1 protein_coding processed_transcript MGP_C3HHeJ_T0038215.1 MGP_C3HHeJ_G0020794.1 mouse_genomes_project 14 14940860 14946448 - MGP_C3HHeJ_P0038215 Zfp503 protein_coding protein_coding MGP_C3HHeJ_T0038943.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134462 46141488 + MGP_C3HHeJ_P0038943 Mettl17 protein_coding protein_coding MGP_C3HHeJ_T0038944.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134496 46141480 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038945.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134498 46139209 + MGP_C3HHeJ_P0038945 Mettl17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038946.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134509 46141413 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038947.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134509 46141413 + MGP_C3HHeJ_P0038947 Mettl17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038948.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134509 46141413 + MGP_C3HHeJ_P0038948 Mettl17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038949.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134532 46138927 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038950.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134538 46135279 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038951.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134555 46142496 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038952.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134558 46138523 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038953.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134566 46138523 + MGP_C3HHeJ_P0038953 Mettl17 protein_coding protein_coding MGP_C3HHeJ_T0038954.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134566 46141355 + MGP_C3HHeJ_P0038954 Mettl17 protein_coding protein_coding MGP_C3HHeJ_T0038955.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134572 46136874 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038956.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46134574 46135283 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0038957.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46135022 46140347 + MGP_C3HHeJ_P0038957 Mettl17 protein_coding protein_coding MGP_C3HHeJ_T0038958.1 MGP_C3HHeJ_G0021022.1 mouse_genomes_project 14 46136780 46138638 + Mettl17 protein_coding retained_intron MGP_C3HHeJ_T0040107.1 MGP_C3HHeJ_G0021416.1 mouse_genomes_project 14 119365751 119367287 + MGP_C3HHeJ_P0040107 Gm10837 protein_coding protein_coding MGP_C3HHeJ_T0039432.1 MGP_C3HHeJ_G0021159.1 mouse_genomes_project 14 52699191 52745255 + MGP_C3HHeJ_P0039432 Fgf9 protein_coding protein_coding MGP_C3HHeJ_T0039433.1 MGP_C3HHeJ_G0021159.1 mouse_genomes_project 14 52701340 52743146 + MGP_C3HHeJ_P0039433 Fgf9 protein_coding protein_coding MGP_C3HHeJ_T0039434.1 MGP_C3HHeJ_G0021159.1 mouse_genomes_project 14 52703769 52743146 + MGP_C3HHeJ_P0039434 Fgf9 protein_coding protein_coding MGP_C3HHeJ_T0039435.1 MGP_C3HHeJ_G0021159.1 mouse_genomes_project 14 52708474 52742364 + MGP_C3HHeJ_P0039435 Fgf9 protein_coding protein_coding MGP_C3HHeJ_T0039562.1 MGP_C3HHeJ_G0021210.1 mouse_genomes_project 14 58856850 58901253 + MGP_C3HHeJ_P0039562 Rp1l1 protein_coding protein_coding MGP_C3HHeJ_T0101733.1 MGP_C3HHeJ_G0039698.1 mouse_genomes_project 14 18922097 18929694 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012899.1 MGP_C3HHeJ_G0011003.1 mouse_genomes_project 14 91979003 91979882 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039179.1 MGP_C3HHeJ_G0021073.1 mouse_genomes_project 14 49362377 49368489 - MGP_C3HHeJ_P0039179 Slc22a17 protein_coding protein_coding MGP_C3HHeJ_T0012849.1 MGP_C3HHeJ_G0010953.1 mouse_genomes_project 14 13297481 13297605 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039072.1 MGP_C3HHeJ_G0021045.1 mouse_genomes_project 14 46768888 46774620 - MGP_C3HHeJ_P0039072 Olfr1507 protein_coding protein_coding MGP_C3HHeJ_T0039073.1 MGP_C3HHeJ_G0021045.1 mouse_genomes_project 14 46768888 46770000 - MGP_C3HHeJ_P0039073 Olfr1507 protein_coding protein_coding MGP_C3HHeJ_T0039074.1 MGP_C3HHeJ_G0021045.1 mouse_genomes_project 14 46769431 46774222 - MGP_C3HHeJ_P0039074 Olfr1507 protein_coding protein_coding MGP_C3HHeJ_T0039075.1 MGP_C3HHeJ_G0021045.1 mouse_genomes_project 14 46769443 46774616 - MGP_C3HHeJ_P0039075 Olfr1507 protein_coding protein_coding MGP_C3HHeJ_T0039076.1 MGP_C3HHeJ_G0021045.1 mouse_genomes_project 14 46769452 46774250 - MGP_C3HHeJ_P0039076 Olfr1507 protein_coding protein_coding MGP_C3HHeJ_T0039077.1 MGP_C3HHeJ_G0021045.1 mouse_genomes_project 14 46769848 46774614 - MGP_C3HHeJ_P0039077 Olfr1507 protein_coding protein_coding MGP_C3HHeJ_T0003491.1 MGP_C3HHeJ_G0003174.1 mouse_genomes_project 14 56033285 56047887 - 1700109G14Rik antisense antisense MGP_C3HHeJ_T0003492.1 MGP_C3HHeJ_G0003174.1 mouse_genomes_project 14 56034975 56060684 - 1700109G14Rik antisense antisense MGP_C3HHeJ_T0003493.1 MGP_C3HHeJ_G0003174.1 mouse_genomes_project 14 56047377 56047861 - 1700109G14Rik antisense antisense MGP_C3HHeJ_T0098046.1 MGP_C3HHeJ_G0036258.1 mouse_genomes_project 14 115514567 115514690 - n-R5s51 rRNA rRNA MGP_C3HHeJ_T0038934.1 MGP_C3HHeJ_G0021014.1 mouse_genomes_project 14 45213592 45215647 + MGP_C3HHeJ_P0038934 Rnase6 protein_coding protein_coding MGP_C3HHeJ_T0098932.1 MGP_C3HHeJ_G0037126.1 mouse_genomes_project 14 46597973 46598077 + Gm26328 snRNA snRNA MGP_C3HHeJ_T0009893.1 MGP_C3HHeJ_G0008026.1 mouse_genomes_project 14 23172081 23172146 + Mir6947 miRNA miRNA MGP_C3HHeJ_T0003467.1 MGP_C3HHeJ_G0003154.1 mouse_genomes_project 14 27896224 27898603 + antisense antisense MGP_C3HHeJ_T0009898.1 MGP_C3HHeJ_G0008031.1 mouse_genomes_project 14 40759329 40759428 - Mir378c miRNA miRNA MGP_C3HHeJ_T0038150.1 MGP_C3HHeJ_G0020779.1 mouse_genomes_project 14 13616317 13621563 + MGP_C3HHeJ_P0038150 Fut11 protein_coding protein_coding MGP_C3HHeJ_T0039341.1 MGP_C3HHeJ_G0021112.1 mouse_genomes_project 14 50255983 50257785 + MGP_C3HHeJ_P0039341 Ltb4r2 protein_coding protein_coding MGP_C3HHeJ_T0039361.1 MGP_C3HHeJ_G0021127.1 mouse_genomes_project 14 50619797 50622491 - MGP_C3HHeJ_P0039361 Ctsg protein_coding protein_coding MGP_C3HHeJ_T0002503.1 MGP_C3HHeJ_G0002415.1 mouse_genomes_project 14 48607153 48607213 + MGP_C3HHeJ_P0002503 Traj22 TR_J_gene TR_J_gene MGP_C3HHeJ_T0037996.1 MGP_C3HHeJ_G0020727.1 mouse_genomes_project 14 619752 634338 - MGP_C3HHeJ_P0037996 Fam107a protein_coding protein_coding MGP_C3HHeJ_T0037997.1 MGP_C3HHeJ_G0020727.1 mouse_genomes_project 14 619752 634340 - MGP_C3HHeJ_P0037997 Fam107a protein_coding protein_coding MGP_C3HHeJ_T0037998.1 MGP_C3HHeJ_G0020727.1 mouse_genomes_project 14 621046 642813 - MGP_C3HHeJ_P0037998 Fam107a protein_coding protein_coding MGP_C3HHeJ_T0037999.1 MGP_C3HHeJ_G0020727.1 mouse_genomes_project 14 623031 634356 - MGP_C3HHeJ_P0037999 Fam107a protein_coding protein_coding MGP_C3HHeJ_T0040007.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99096523 99143454 - MGP_C3HHeJ_P0040007 Mycbp2 protein_coding protein_coding MGP_C3HHeJ_T0040008.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99096523 99333535 - MGP_C3HHeJ_P0040008 Mycbp2 protein_coding protein_coding MGP_C3HHeJ_T0040009.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99096523 99333153 - MGP_C3HHeJ_P0040009 Mycbp2 protein_coding protein_coding MGP_C3HHeJ_T0040010.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99097232 99333252 - MGP_C3HHeJ_P0040010 Mycbp2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040011.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99097245 99098509 - Mycbp2 protein_coding processed_transcript MGP_C3HHeJ_T0040012.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99125171 99140499 - Mycbp2 protein_coding retained_intron MGP_C3HHeJ_T0040013.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99143503 99179517 - MGP_C3HHeJ_P0040013 Mycbp2 protein_coding protein_coding MGP_C3HHeJ_T0040014.1 MGP_C3HHeJ_G0021372.1 mouse_genomes_project 14 99301105 99333549 - Mycbp2 protein_coding retained_intron MGP_C3HHeJ_T0038053.1 MGP_C3HHeJ_G0020748.1 mouse_genomes_project 14 8026546 8109039 - MGP_C3HHeJ_P0038053 Lrrc3b protein_coding protein_coding MGP_C3HHeJ_T0038054.1 MGP_C3HHeJ_G0020748.1 mouse_genomes_project 14 8026547 8106558 - MGP_C3HHeJ_P0038054 Lrrc3b protein_coding protein_coding MGP_C3HHeJ_T0100205.1 MGP_C3HHeJ_G0038399.1 mouse_genomes_project 14 70891121 70891251 + Snora31 snoRNA snoRNA MGP_C3HHeJ_T0038570.1 MGP_C3HHeJ_G0020876.1 mouse_genomes_project 14 25467146 25488772 - MGP_C3HHeJ_P0038570 protein_coding protein_coding MGP_C3HHeJ_T0038571.1 MGP_C3HHeJ_G0020876.1 mouse_genomes_project 14 25467161 25488739 - MGP_C3HHeJ_P0038571 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038572.1 MGP_C3HHeJ_G0020876.1 mouse_genomes_project 14 25478647 25488721 - protein_coding retained_intron MGP_C3HHeJ_T0038573.1 MGP_C3HHeJ_G0020876.1 mouse_genomes_project 14 25481053 25488746 - protein_coding retained_intron MGP_C3HHeJ_T0038574.1 MGP_C3HHeJ_G0020876.1 mouse_genomes_project 14 25485729 25488772 - protein_coding retained_intron MGP_C3HHeJ_T0101737.1 MGP_C3HHeJ_G0039702.1 mouse_genomes_project 14 44445503 44445786 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039787.1 MGP_C3HHeJ_G0021295.1 mouse_genomes_project 14 67962069 67982049 - MGP_C3HHeJ_P0039787 Cysltr2 protein_coding protein_coding MGP_C3HHeJ_T0039788.1 MGP_C3HHeJ_G0021295.1 mouse_genomes_project 14 67962069 67982049 - MGP_C3HHeJ_P0039788 Cysltr2 protein_coding protein_coding MGP_C3HHeJ_T0039692.1 MGP_C3HHeJ_G0021261.1 mouse_genomes_project 14 64368955 64372873 - MGP_C3HHeJ_P0039692 Gm27179 protein_coding protein_coding MGP_C3HHeJ_T0098919.1 MGP_C3HHeJ_G0037113.1 mouse_genomes_project 14 20625515 20625624 + Gm22485 snRNA snRNA MGP_C3HHeJ_T0006649.1 MGP_C3HHeJ_G0005487.1 mouse_genomes_project 14 114757824 114767076 + Gm26773 lincRNA lincRNA MGP_C3HHeJ_T0038285.1 MGP_C3HHeJ_G0020811.1 mouse_genomes_project 14 18997257 19022996 + protein_coding processed_transcript MGP_C3HHeJ_T0038287.1 MGP_C3HHeJ_G0020811.1 mouse_genomes_project 14 18997974 19024399 + MGP_C3HHeJ_P0038287 protein_coding protein_coding MGP_C3HHeJ_T0012873.1 MGP_C3HHeJ_G0010977.1 mouse_genomes_project 14 45496541 46025183 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039523.1 MGP_C3HHeJ_G0021192.1 mouse_genomes_project 14 57644436 57766781 + MGP_C3HHeJ_P0039523 Wdfy2 protein_coding protein_coding MGP_C3HHeJ_T0100179.1 MGP_C3HHeJ_G0038373.1 mouse_genomes_project 14 20663914 20664012 - Gm25697 snoRNA snoRNA MGP_C3HHeJ_T0039762.1 MGP_C3HHeJ_G0021286.1 mouse_genomes_project 14 65474863 65479588 + MGP_C3HHeJ_P0039762 Nudt18 protein_coding protein_coding MGP_C3HHeJ_T0039334.1 MGP_C3HHeJ_G0021109.1 mouse_genomes_project 14 50224767 50225408 - Dhrs1 protein_coding retained_intron MGP_C3HHeJ_T0039335.1 MGP_C3HHeJ_G0021109.1 mouse_genomes_project 14 50224767 50231346 - Dhrs1 protein_coding retained_intron MGP_C3HHeJ_T0039336.1 MGP_C3HHeJ_G0021109.1 mouse_genomes_project 14 50224769 50231437 - MGP_C3HHeJ_P0039336 Dhrs1 protein_coding protein_coding MGP_C3HHeJ_T0039337.1 MGP_C3HHeJ_G0021109.1 mouse_genomes_project 14 50224981 50225892 - Dhrs1 protein_coding retained_intron MGP_C3HHeJ_T0039918.1 MGP_C3HHeJ_G0021342.1 mouse_genomes_project 14 74651211 74757679 + MGP_C3HHeJ_P0039918 Elf1 protein_coding protein_coding MGP_C3HHeJ_T0039919.1 MGP_C3HHeJ_G0021342.1 mouse_genomes_project 14 74687297 74757678 + MGP_C3HHeJ_P0039919 Elf1 protein_coding protein_coding MGP_C3HHeJ_T0040090.1 MGP_C3HHeJ_G0021405.1 mouse_genomes_project 14 118082247 118178472 - MGP_C3HHeJ_P0040090 Stk24 protein_coding protein_coding MGP_C3HHeJ_T0002475.1 MGP_C3HHeJ_G0002389.1 mouse_genomes_project 14 48578419 48578481 + MGP_C3HHeJ_P0002475 Traj49 TR_J_gene TR_J_gene MGP_C3HHeJ_T0002476.1 MGP_C3HHeJ_G0002389.1 mouse_genomes_project 14 48578419 48578478 + Traj49 TR_J_gene processed_transcript MGP_C3HHeJ_T0000883.1 MGP_C3HHeJ_G0000823.1 mouse_genomes_project 14 49546379 49547418 - TEC TEC MGP_C3HHeJ_T0003495.1 MGP_C3HHeJ_G0003176.1 mouse_genomes_project 14 58456726 58461565 - Gm15918 antisense antisense MGP_C3HHeJ_T0098961.1 MGP_C3HHeJ_G0037155.1 mouse_genomes_project 14 107098977 107099080 + Gm26255 snRNA snRNA MGP_C3HHeJ_T0039763.1 MGP_C3HHeJ_G0021287.1 mouse_genomes_project 14 65480312 65497742 - MGP_C3HHeJ_P0039763 Fam160b2 protein_coding protein_coding MGP_C3HHeJ_T0100175.1 MGP_C3HHeJ_G0038369.1 mouse_genomes_project 14 4766950 4767079 - Gm24578 snoRNA snoRNA MGP_C3HHeJ_T0003461.1 MGP_C3HHeJ_G0003148.1 mouse_genomes_project 14 18901376 18914894 - Anxa11os antisense antisense MGP_C3HHeJ_T0006604.1 MGP_C3HHeJ_G0005455.1 mouse_genomes_project 14 40354699 40360876 - Rubie lincRNA lincRNA MGP_C3HHeJ_T0038629.1 MGP_C3HHeJ_G0020894.1 mouse_genomes_project 14 27267032 27278729 + MGP_C3HHeJ_P0038629 Gdf10 protein_coding protein_coding MGP_C3HHeJ_T0039063.1 MGP_C3HHeJ_G0021042.1 mouse_genomes_project 14 46665957 46670731 - MGP_C3HHeJ_P0039063 protein_coding protein_coding MGP_C3HHeJ_T0038997.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46365982 46416174 + MGP_C3HHeJ_P0038997 Rpgrip1 protein_coding protein_coding MGP_C3HHeJ_T0038998.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46366182 46415311 + MGP_C3HHeJ_P0038998 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0038999.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46366201 46375979 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039000.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46366208 46414293 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039001.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46366218 46416206 + MGP_C3HHeJ_P0039001 Rpgrip1 protein_coding protein_coding MGP_C3HHeJ_T0039002.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46367469 46415083 + MGP_C3HHeJ_P0039002 Rpgrip1 protein_coding protein_coding MGP_C3HHeJ_T0039003.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46369864 46390133 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039004.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46374060 46374642 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039005.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46376201 46395859 + MGP_C3HHeJ_P0039005 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039006.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46391802 46404548 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039007.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46391847 46416205 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039008.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46400627 46404450 + MGP_C3HHeJ_P0039008 Rpgrip1 protein_coding protein_coding MGP_C3HHeJ_T0039009.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46400687 46405664 + MGP_C3HHeJ_P0039009 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039010.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46402263 46404640 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039011.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46404661 46415161 + MGP_C3HHeJ_P0039011 Rpgrip1 protein_coding protein_coding MGP_C3HHeJ_T0039012.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46404744 46405884 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039013.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46405610 46415005 + MGP_C3HHeJ_P0039013 Rpgrip1 protein_coding protein_coding MGP_C3HHeJ_T0039014.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46407202 46411199 + Rpgrip1 protein_coding retained_intron MGP_C3HHeJ_T0039015.1 MGP_C3HHeJ_G0021032.1 mouse_genomes_project 14 46413318 46418414 + MGP_C3HHeJ_P0039015 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040083.1 MGP_C3HHeJ_G0021402.1 mouse_genomes_project 14 117236027 117265248 + MGP_C3HHeJ_P0040083 Rap2a protein_coding protein_coding MGP_C3HHeJ_T0040084.1 MGP_C3HHeJ_G0021402.1 mouse_genomes_project 14 117261654 117265248 + MGP_C3HHeJ_P0040084 Rap2a protein_coding protein_coding MGP_C3HHeJ_T0003453.1 MGP_C3HHeJ_G0003143.1 mouse_genomes_project 14 13561631 13564671 + 2810402E24Rik antisense antisense MGP_C3HHeJ_T0012854.1 MGP_C3HHeJ_G0010958.1 mouse_genomes_project 14 18993394 18994616 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009926.1 MGP_C3HHeJ_G0008059.1 mouse_genomes_project 14 96609453 96609570 + Gm22401 miRNA miRNA MGP_C3HHeJ_T0000899.1 MGP_C3HHeJ_G0000839.1 mouse_genomes_project 14 111384361 111384625 - TEC TEC MGP_C3HHeJ_T0038270.1 MGP_C3HHeJ_G0020805.1 mouse_genomes_project 14 18935642 18953164 - MGP_C3HHeJ_P0038270 protein_coding protein_coding MGP_C3HHeJ_T0038277.1 MGP_C3HHeJ_G0020805.1 mouse_genomes_project 14 18937018 18953127 - MGP_C3HHeJ_P0038277 protein_coding protein_coding MGP_C3HHeJ_T0009918.1 MGP_C3HHeJ_G0008051.1 mouse_genomes_project 14 65188562 65188648 - Gm44340 miRNA miRNA MGP_C3HHeJ_T0002483.1 MGP_C3HHeJ_G0002395.1 mouse_genomes_project 14 48584573 48584630 + MGP_C3HHeJ_P0002483 Traj43 TR_J_gene TR_J_gene MGP_C3HHeJ_T0006626.1 MGP_C3HHeJ_G0005471.1 mouse_genomes_project 14 56975179 56977619 - Gm26969 lincRNA lincRNA MGP_C3HHeJ_T0038643.1 MGP_C3HHeJ_G0020905.1 mouse_genomes_project 14 27608118 27688371 - MGP_C3HHeJ_P0038643 Fam35a protein_coding protein_coding MGP_C3HHeJ_T0002520.1 MGP_C3HHeJ_G0002432.1 mouse_genomes_project 14 48628083 48628149 + MGP_C3HHeJ_P0002520 Traj2 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039897.1 MGP_C3HHeJ_G0021330.1 mouse_genomes_project 14 73198407 73206390 - MGP_C3HHeJ_P0039897 Fam216b protein_coding protein_coding MGP_C3HHeJ_T0039898.1 MGP_C3HHeJ_G0021330.1 mouse_genomes_project 14 73199099 73206382 - MGP_C3HHeJ_P0039898 Fam216b protein_coding protein_coding MGP_C3HHeJ_T0039899.1 MGP_C3HHeJ_G0021330.1 mouse_genomes_project 14 73200129 73206364 - MGP_C3HHeJ_P0039899 Fam216b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039894.1 MGP_C3HHeJ_G0021328.1 mouse_genomes_project 14 72933866 72983220 - MGP_C3HHeJ_P0039894 Dnajc15 protein_coding protein_coding MGP_C3HHeJ_T0039616.1 MGP_C3HHeJ_G0021233.1 mouse_genomes_project 14 61051974 61092263 - MGP_C3HHeJ_P0039616 Ephx2 protein_coding protein_coding MGP_C3HHeJ_T0039649.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62003991 62027458 - MGP_C3HHeJ_P0039649 Bnip3l protein_coding unknown_likely_coding MGP_C3HHeJ_T0039650.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62003998 62027527 - MGP_C3HHeJ_P0039650 Bnip3l protein_coding protein_coding MGP_C3HHeJ_T0039651.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62003998 62027548 - MGP_C3HHeJ_P0039651 Bnip3l protein_coding protein_coding MGP_C3HHeJ_T0039652.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62006032 62008823 - Bnip3l protein_coding processed_transcript MGP_C3HHeJ_T0039653.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62008216 62018907 - Bnip3l protein_coding processed_transcript MGP_C3HHeJ_T0039654.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62008395 62019510 - Bnip3l protein_coding processed_transcript MGP_C3HHeJ_T0039655.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62008404 62018730 - Bnip3l protein_coding processed_transcript MGP_C3HHeJ_T0039656.1 MGP_C3HHeJ_G0021243.1 mouse_genomes_project 14 62012529 62018662 - Bnip3l protein_coding retained_intron MGP_C3HHeJ_T0039884.1 MGP_C3HHeJ_G0021323.1 mouse_genomes_project 14 71609968 71633838 - MGP_C3HHeJ_P0039884 Serp2 protein_coding protein_coding MGP_C3HHeJ_T0098935.1 MGP_C3HHeJ_G0037129.1 mouse_genomes_project 14 51388596 51388655 - Gm27635 snRNA snRNA MGP_C3HHeJ_T0012840.1 MGP_C3HHeJ_G0010944.1 mouse_genomes_project 14 3564844 3566896 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038733.1 MGP_C3HHeJ_G0020940.1 mouse_genomes_project 14 39085713 39106272 + MGP_C3HHeJ_P0038733 Psmc6 protein_coding protein_coding MGP_C3HHeJ_T0039747.1 MGP_C3HHeJ_G0021278.1 mouse_genomes_project 14 65268000 65324293 - MGP_C3HHeJ_P0039747 Piwil2 protein_coding protein_coding MGP_C3HHeJ_T0011281.1 MGP_C3HHeJ_G0009414.1 mouse_genomes_project 14 56398035 56398120 + Gm27747 misc_RNA misc_RNA MGP_C3HHeJ_T0039279.1 MGP_C3HHeJ_G0021097.1 mouse_genomes_project 14 50070770 50082755 + MGP_C3HHeJ_P0039279 Rnf31 protein_coding protein_coding MGP_C3HHeJ_T0039280.1 MGP_C3HHeJ_G0021097.1 mouse_genomes_project 14 50070806 50076718 + MGP_C3HHeJ_P0039280 Rnf31 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039281.1 MGP_C3HHeJ_G0021097.1 mouse_genomes_project 14 50071337 50082726 + MGP_C3HHeJ_P0039281 Rnf31 protein_coding protein_coding MGP_C3HHeJ_T0039282.1 MGP_C3HHeJ_G0021097.1 mouse_genomes_project 14 50071529 50072010 + Rnf31 protein_coding retained_intron MGP_C3HHeJ_T0039283.1 MGP_C3HHeJ_G0021097.1 mouse_genomes_project 14 50077446 50078012 + Rnf31 protein_coding retained_intron MGP_C3HHeJ_T0038677.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30327337 30420757 - MGP_C3HHeJ_P0038677 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038678.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30327337 30420847 - MGP_C3HHeJ_P0038678 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038679.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331241 30358749 - Ccser2 protein_coding processed_transcript MGP_C3HHeJ_T0038680.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331242 30387905 - MGP_C3HHeJ_P0038680 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038681.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331497 30361556 - MGP_C3HHeJ_P0038681 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038682.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331544 30371648 - MGP_C3HHeJ_P0038682 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038683.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331760 30371850 - MGP_C3HHeJ_P0038683 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038684.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331919 30379167 - MGP_C3HHeJ_P0038684 Ccser2 protein_coding protein_coding MGP_C3HHeJ_T0038685.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30331971 30338831 - Ccser2 protein_coding retained_intron MGP_C3HHeJ_T0038686.1 MGP_C3HHeJ_G0020918.1 mouse_genomes_project 14 30353260 30392278 - Ccser2 protein_coding processed_transcript MGP_C3HHeJ_T0012900.1 MGP_C3HHeJ_G0011004.1 mouse_genomes_project 14 93931947 93932445 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0038127.1 MGP_C3HHeJ_G0020772.1 mouse_genomes_project 14 13369143 13394421 - MGP_C3HHeJ_P0038127 Anxa7 protein_coding protein_coding MGP_C3HHeJ_T0038128.1 MGP_C3HHeJ_G0020772.1 mouse_genomes_project 14 13369143 13394421 - MGP_C3HHeJ_P0038128 Anxa7 protein_coding protein_coding MGP_C3HHeJ_T0038129.1 MGP_C3HHeJ_G0020772.1 mouse_genomes_project 14 13369160 13394263 - MGP_C3HHeJ_P0038129 Anxa7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017204.1 MGP_C3HHeJ_G0015046.1 mouse_genomes_project 14 114886014 114888542 + Gm4675 processed_transcript processed_transcript MGP_C3HHeJ_T0017205.1 MGP_C3HHeJ_G0015046.1 mouse_genomes_project 14 114886662 114911665 + Gm4675 processed_transcript processed_transcript MGP_C3HHeJ_T0017206.1 MGP_C3HHeJ_G0015046.1 mouse_genomes_project 14 114903221 114903764 + Gm4675 processed_transcript processed_transcript MGP_C3HHeJ_T0040042.1 MGP_C3HHeJ_G0021385.1 mouse_genomes_project 14 107118477 107124991 - MGP_C3HHeJ_P0040042 Slitrk6 protein_coding protein_coding MGP_C3HHeJ_T0039388.1 MGP_C3HHeJ_G0021145.1 mouse_genomes_project 14 51663618 51669693 - MGP_C3HHeJ_P0039388 Gjb2 protein_coding protein_coding MGP_C3HHeJ_T0039478.1 MGP_C3HHeJ_G0021174.1 mouse_genomes_project 14 55099545 55102262 + MGP_C3HHeJ_P0039478 Amer2 protein_coding protein_coding MGP_C3HHeJ_T0040044.1 MGP_C3HHeJ_G0021387.1 mouse_genomes_project 14 111656699 111698651 + Gpc5 protein_coding retained_intron MGP_C3HHeJ_T0040045.1 MGP_C3HHeJ_G0021387.1 mouse_genomes_project 14 111656734 113127648 + MGP_C3HHeJ_P0040045 Gpc5 protein_coding protein_coding MGP_C3HHeJ_T0040046.1 MGP_C3HHeJ_G0021387.1 mouse_genomes_project 14 111656756 111990951 + MGP_C3HHeJ_P0040046 Gpc5 protein_coding protein_coding MGP_C3HHeJ_T0040047.1 MGP_C3HHeJ_G0021387.1 mouse_genomes_project 14 111657110 113126906 + MGP_C3HHeJ_P0040047 Gpc5 protein_coding protein_coding MGP_C3HHeJ_T0100204.1 MGP_C3HHeJ_G0038398.1 mouse_genomes_project 14 65317733 65317843 - Gm22725 snoRNA snoRNA MGP_C3HHeJ_T0002519.1 MGP_C3HHeJ_G0002431.1 mouse_genomes_project 14 48627539 48627605 + MGP_C3HHeJ_P0002519 Traj3 TR_J_gene TR_J_gene MGP_C3HHeJ_T0039733.1 MGP_C3HHeJ_G0021276.1 mouse_genomes_project 14 65096664 65173466 - MGP_C3HHeJ_P0039733 Ppp3cc protein_coding protein_coding MGP_C3HHeJ_T0038865.1 MGP_C3HHeJ_G0020972.1 mouse_genomes_project 14 44133168 44134814 + MGP_C3HHeJ_P0038865 protein_coding protein_coding MGP_C3HHeJ_T0039823.1 MGP_C3HHeJ_G0021303.1 mouse_genomes_project 14 68502825 68507026 + Sucla2 protein_coding processed_transcript MGP_C3HHeJ_T0039824.1 MGP_C3HHeJ_G0021303.1 mouse_genomes_project 14 68503001 68547703 + MGP_C3HHeJ_P0039824 Sucla2 protein_coding protein_coding MGP_C3HHeJ_T0039825.1 MGP_C3HHeJ_G0021303.1 mouse_genomes_project 14 68518534 68519123 + Sucla2 protein_coding retained_intron MGP_C3HHeJ_T0039826.1 MGP_C3HHeJ_G0021303.1 mouse_genomes_project 14 68542046 68542556 + Sucla2 protein_coding retained_intron MGP_C3HHeJ_T0039827.1 MGP_C3HHeJ_G0021303.1 mouse_genomes_project 14 68546957 68547694 + Sucla2 protein_coding processed_transcript MGP_C3HHeJ_T0039594.1 MGP_C3HHeJ_G0021225.1 mouse_genomes_project 14 60577647 60685220 + MGP_C3HHeJ_P0039594 Scara5 protein_coding protein_coding MGP_C3HHeJ_T0039595.1 MGP_C3HHeJ_G0021225.1 mouse_genomes_project 14 60577681 60665174 + MGP_C3HHeJ_P0039595 Scara5 protein_coding protein_coding MGP_C3HHeJ_T0039596.1 MGP_C3HHeJ_G0021225.1 mouse_genomes_project 14 60591264 60665022 + Scara5 protein_coding processed_transcript MGP_C3HHeJ_T0006653.1 MGP_C3HHeJ_G0005491.1 mouse_genomes_project 14 116473881 116476221 + 1700006F04Rik lincRNA lincRNA MGP_C3HHeJ_T0098368.1 MGP_C3HHeJ_G0036576.1 mouse_genomes_project 14 118044654 118049914 + B930095G15Rik sense_intronic sense_intronic MGP_C3HHeJ_T0038534.1 MGP_C3HHeJ_G0020868.1 mouse_genomes_project 14 24895657 24921744 + Btd protein_coding processed_transcript MGP_C3HHeJ_T0038535.1 MGP_C3HHeJ_G0020868.1 mouse_genomes_project 14 24895686 24923152 + MGP_C3HHeJ_P0038535 Btd protein_coding protein_coding MGP_C3HHeJ_T0009932.1 MGP_C3HHeJ_G0008065.1 mouse_genomes_project 14 111607855 111607939 + Mir17 miRNA miRNA MGP_C3HHeJ_T0000888.1 MGP_C3HHeJ_G0000828.1 mouse_genomes_project 14 61956744 61958116 + TEC TEC MGP_C3HHeJ_T0038342.1 MGP_C3HHeJ_G0020824.1 mouse_genomes_project 14 20106009 20108007 + MGP_C3HHeJ_P0038342 Hesx1 protein_coding protein_coding MGP_C3HHeJ_T0039468.1 MGP_C3HHeJ_G0021170.1 mouse_genomes_project 14 54357438 54891961 - MGP_C3HHeJ_P0039468 Atp8a2 protein_coding protein_coding MGP_C3HHeJ_T0039469.1 MGP_C3HHeJ_G0021170.1 mouse_genomes_project 14 54740199 54804466 - MGP_C3HHeJ_P0039469 Atp8a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039470.1 MGP_C3HHeJ_G0021170.1 mouse_genomes_project 14 54759567 54914035 - MGP_C3HHeJ_P0039470 Atp8a2 protein_coding protein_coding MGP_C3HHeJ_T0039471.1 MGP_C3HHeJ_G0021170.1 mouse_genomes_project 14 54804165 54892113 - MGP_C3HHeJ_P0039471 Atp8a2 protein_coding protein_coding MGP_C3HHeJ_T0039472.1 MGP_C3HHeJ_G0021170.1 mouse_genomes_project 14 54804224 54805834 - MGP_C3HHeJ_P0039472 Atp8a2 protein_coding protein_coding MGP_C3HHeJ_T0039475.1 MGP_C3HHeJ_G0021170.1 mouse_genomes_project 14 54900796 54913999 - Atp8a2 protein_coding processed_transcript MGP_C3HHeJ_T0101736.1 MGP_C3HHeJ_G0039701.1 mouse_genomes_project 14 37660640 37661100 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0039069.1 MGP_C3HHeJ_G0021044.1 mouse_genomes_project 14 46736394 46741120 - MGP_C3HHeJ_P0039069 Olfr1508 protein_coding protein_coding MGP_C3HHeJ_T0039070.1 MGP_C3HHeJ_G0021044.1 mouse_genomes_project 14 46736748 46741154 - MGP_C3HHeJ_P0039070 Olfr1508 protein_coding protein_coding MGP_C3HHeJ_T0039071.1 MGP_C3HHeJ_G0021044.1 mouse_genomes_project 14 46737216 46740749 - MGP_C3HHeJ_P0039071 Olfr1508 protein_coding protein_coding MGP_C3HHeJ_T0038144.1 MGP_C3HHeJ_G0020776.1 mouse_genomes_project 14 13569724 13577139 - MGP_C3HHeJ_P0038144 Myoz1 protein_coding protein_coding MGP_C3HHeJ_T0038344.1 MGP_C3HHeJ_G0020826.1 mouse_genomes_project 14 20367990 20536540 + MGP_C3HHeJ_P0038344 Arhgef3 protein_coding protein_coding MGP_C3HHeJ_T0038345.1 MGP_C3HHeJ_G0020826.1 mouse_genomes_project 14 20466538 20536555 + MGP_C3HHeJ_P0038345 Arhgef3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039431.1 MGP_C3HHeJ_G0021158.1 mouse_genomes_project 14 52544012 52636406 - MGP_C3HHeJ_P0039431 Micu2 protein_coding protein_coding MGP_C3HHeJ_T0039682.1 MGP_C3HHeJ_G0021254.1 mouse_genomes_project 14 63694428 63745655 - MGP_C3HHeJ_P0039682 Adam28 protein_coding protein_coding MGP_C3HHeJ_T0039683.1 MGP_C3HHeJ_G0021254.1 mouse_genomes_project 14 63695278 63745655 - MGP_C3HHeJ_P0039683 Adam28 protein_coding protein_coding MGP_C3HHeJ_T0012891.1 MGP_C3HHeJ_G0010995.1 mouse_genomes_project 14 66739172 66740157 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0039104.1 MGP_C3HHeJ_G0021052.1 mouse_genomes_project 14 48840636 48850195 + MGP_C3HHeJ_P0039104 Mmp14 protein_coding protein_coding MGP_C3HHeJ_T0039105.1 MGP_C3HHeJ_G0021052.1 mouse_genomes_project 14 48840647 48845304 + MGP_C3HHeJ_P0039105 Mmp14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039106.1 MGP_C3HHeJ_G0021052.1 mouse_genomes_project 14 48840688 48845276 + Mmp14 protein_coding retained_intron MGP_C3HHeJ_T0039107.1 MGP_C3HHeJ_G0021052.1 mouse_genomes_project 14 48840742 48842290 + Mmp14 protein_coding retained_intron MGP_C3HHeJ_T0039108.1 MGP_C3HHeJ_G0021052.1 mouse_genomes_project 14 48840865 48849626 + MGP_C3HHeJ_P0039108 Mmp14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0039109.1 MGP_C3HHeJ_G0021052.1 mouse_genomes_project 14 48841460 48844987 + MGP_C3HHeJ_P0039109 Mmp14 protein_coding protein_coding MGP_C3HHeJ_T0017158.1 MGP_C3HHeJ_G0015030.1 mouse_genomes_project 14 38585328 38699361 + processed_transcript processed_transcript MGP_C3HHeJ_T0017159.1 MGP_C3HHeJ_G0015030.1 mouse_genomes_project 14 38585611 38716374 + processed_transcript processed_transcript MGP_C3HHeJ_T0002568.1 MGP_C3HHeJ_G0002471.1 mouse_genomes_project 14 47010182 47010668 + MGP_C3HHeJ_P0002568 TR_V_gene TR_V_gene MGP_C3HHeJ_T0003472.1 MGP_C3HHeJ_G0003159.1 mouse_genomes_project 14 40165368 40168319 + antisense antisense MGP_C3HHeJ_T0006630.1 MGP_C3HHeJ_G0005474.1 mouse_genomes_project 14 57643654 57644954 - Gm26536 lincRNA lincRNA MGP_C3HHeJ_T0039904.1 MGP_C3HHeJ_G0021334.1 mouse_genomes_project 14 74010849 74353969 + MGP_C3HHeJ_P0039904 Vwa8 protein_coding protein_coding MGP_C3HHeJ_T0002657.1 MGP_C3HHeJ_G0002539.1 mouse_genomes_project 14 47507789 47508069 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0101747.1 MGP_C3HHeJ_G0039712.1 mouse_genomes_project 14 46092814 46093277 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009904.1 MGP_C3HHeJ_G0008037.1 mouse_genomes_project 14 50601630 50601698 - Mir6949 miRNA miRNA MGP_C3HHeJ_T0038866.1 MGP_C3HHeJ_G0020973.1 mouse_genomes_project 14 44133236 44134814 + MGP_C3HHeJ_P0038866 Olfr727 protein_coding protein_coding MGP_C3HHeJ_T0038000.1 MGP_C3HHeJ_G0020728.1 mouse_genomes_project 14 674619 704473 - MGP_C3HHeJ_P0038000 Oit1 protein_coding protein_coding MGP_C3HHeJ_T0006601.1 MGP_C3HHeJ_G0005452.1 mouse_genomes_project 14 39755628 39782001 + lincRNA lincRNA MGP_C3HHeJ_T0101137.1 MGP_C3HHeJ_G0039302.1 mouse_genomes_project 14 53530114 53530597 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101138.1 MGP_C3HHeJ_G0039302.1 mouse_genomes_project 14 53530518 53531510 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0006613.1 MGP_C3HHeJ_G0005460.1 mouse_genomes_project 14 45447416 45452702 + Gm21718 lincRNA lincRNA MGP_C3HHeJ_T0006614.1 MGP_C3HHeJ_G0005460.1 mouse_genomes_project 14 45448746 45453711 + Gm21718 lincRNA lincRNA MGP_C3HHeJ_T0038784.1 MGP_C3HHeJ_G0020956.1 mouse_genomes_project 14 41206071 41222762 + MGP_C3HHeJ_P0038784 Lgals3 protein_coding protein_coding MGP_C3HHeJ_T0038785.1 MGP_C3HHeJ_G0020956.1 mouse_genomes_project 14 41212551 41228482 + MGP_C3HHeJ_P0038785 Lgals3 protein_coding protein_coding MGP_C3HHeJ_T0038786.1 MGP_C3HHeJ_G0020956.1 mouse_genomes_project 14 41212637 41228118 + MGP_C3HHeJ_P0038786 Lgals3 protein_coding protein_coding MGP_C3HHeJ_T0038787.1 MGP_C3HHeJ_G0020956.1 mouse_genomes_project 14 41212654 41222661 + MGP_C3HHeJ_P0038787 Lgals3 protein_coding protein_coding MGP_C3HHeJ_T0038788.1 MGP_C3HHeJ_G0020956.1 mouse_genomes_project 14 41212712 41228113 + MGP_C3HHeJ_P0038788 Lgals3 protein_coding protein_coding MGP_C3HHeJ_T0038939.1 MGP_C3HHeJ_G0021019.1 mouse_genomes_project 14 45562660 45567763 + MGP_C3HHeJ_P0038939 protein_coding protein_coding MGP_C3HHeJ_T0039981.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97675578 97885365 + MGP_C3HHeJ_P0039981 Lmo7 protein_coding protein_coding MGP_C3HHeJ_T0039982.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97775473 97830097 + Lmo7 protein_coding processed_transcript MGP_C3HHeJ_T0039983.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97785016 97885344 + MGP_C3HHeJ_P0039983 Lmo7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0039984.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97786741 97842785 + MGP_C3HHeJ_P0039984 Lmo7 protein_coding protein_coding MGP_C3HHeJ_T0039985.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97786801 97833680 + Lmo7 protein_coding processed_transcript MGP_C3HHeJ_T0039986.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97787011 97835099 + Lmo7 protein_coding retained_intron MGP_C3HHeJ_T0039987.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97787152 97885342 + MGP_C3HHeJ_P0039987 Lmo7 protein_coding protein_coding MGP_C3HHeJ_T0039988.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97787323 97862947 + Lmo7 protein_coding retained_intron MGP_C3HHeJ_T0039989.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97818741 97833483 + Lmo7 protein_coding processed_transcript MGP_C3HHeJ_T0039990.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97826096 97885181 + MGP_C3HHeJ_P0039990 Lmo7 protein_coding protein_coding MGP_C3HHeJ_T0039991.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97830106 97884850 + MGP_C3HHeJ_P0039991 Lmo7 protein_coding protein_coding MGP_C3HHeJ_T0039992.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97833352 97850368 + Lmo7 protein_coding retained_intron MGP_C3HHeJ_T0039993.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97833384 97837466 + Lmo7 protein_coding retained_intron MGP_C3HHeJ_T0039994.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97869912 97881415 + Lmo7 protein_coding retained_intron MGP_C3HHeJ_T0039995.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97876957 97883792 + Lmo7 protein_coding processed_transcript MGP_C3HHeJ_T0039996.1 MGP_C3HHeJ_G0021367.1 mouse_genomes_project 14 97879915 97883521 + Lmo7 protein_coding processed_transcript MGP_C3HHeJ_T0000882.1 MGP_C3HHeJ_G0000822.1 mouse_genomes_project 14 49542871 49545053 - TEC TEC MGP_C3HHeJ_T0002590.1 MGP_C3HHeJ_G0002488.1 mouse_genomes_project 14 48140496 48141113 + MGP_C3HHeJ_P0002590 Trav3-4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0039603.1 MGP_C3HHeJ_G0021228.1 mouse_genomes_project 14 60765331 60808841 + MGP_C3HHeJ_P0039603 Ccdc25 protein_coding protein_coding MGP_C3HHeJ_T0002660.1 MGP_C3HHeJ_G0002542.1 mouse_genomes_project 14 48142103 48142365 + TR_V_pseudogene TR_V_pseudogene MGP_C3HHeJ_T0038266.1 MGP_C3HHeJ_G0020804.1 mouse_genomes_project 14 18885833 18934935 + MGP_C3HHeJ_P0038266 Anxa11 protein_coding protein_coding MGP_C3HHeJ_T0038267.1 MGP_C3HHeJ_G0020804.1 mouse_genomes_project 14 18885860 18934935 + Anxa11 protein_coding retained_intron MGP_C3HHeJ_T0038268.1 MGP_C3HHeJ_G0020804.1 mouse_genomes_project 14 18885860 18924574 + Anxa11 protein_coding retained_intron MGP_C3HHeJ_T0038269.1 MGP_C3HHeJ_G0020804.1 mouse_genomes_project 14 18885860 18924967 + MGP_C3HHeJ_P0038269 Anxa11 protein_coding protein_coding MGP_C3HHeJ_T0039604.1 MGP_C3HHeJ_G0021229.1 mouse_genomes_project 14 60872800 60908327 - MGP_C3HHeJ_P0039604 Scara3 protein_coding protein_coding MGP_C3HHeJ_T0000881.1 MGP_C3HHeJ_G0000821.1 mouse_genomes_project 14 49329513 49334414 + TEC TEC MGP_C3HHeJ_T0003371.1 MGP_C3HHeJ_G0003096.1 mouse_genomes_project 13 22314950 22324570 + 4932702P03Rik antisense antisense MGP_C3HHeJ_T0003372.1 MGP_C3HHeJ_G0003096.1 mouse_genomes_project 13 22314953 22317691 + 4932702P03Rik antisense antisense MGP_C3HHeJ_T0017133.1 MGP_C3HHeJ_G0015015.1 mouse_genomes_project 13 33019189 33021672 + 1700011B04Rik processed_transcript retained_intron MGP_C3HHeJ_T0017134.1 MGP_C3HHeJ_G0015015.1 mouse_genomes_project 13 33020544 33026924 + 1700011B04Rik processed_transcript lincRNA MGP_C3HHeJ_T0101726.1 MGP_C3HHeJ_G0039691.1 mouse_genomes_project 13 31630984 31631908 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036019.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11162644 11208603 - MGP_C3HHeJ_P0036019 Tbce protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036020.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11162646 11170197 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036021.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11162646 11166290 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036022.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11162647 11208662 - MGP_C3HHeJ_P0036022 Tbce protein_coding protein_coding MGP_C3HHeJ_T0036023.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11162648 11208662 - MGP_C3HHeJ_P0036023 Tbce protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036024.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11167756 11208645 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036025.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11169881 11174535 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036026.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11169919 11173742 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036027.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11169926 11174528 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036028.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11169934 11174194 - Tbce protein_coding processed_transcript MGP_C3HHeJ_T0036029.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11175075 11208636 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036030.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11179042 11208620 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0036031.1 MGP_C3HHeJ_G0019988.1 mouse_genomes_project 13 11183965 11208641 - Tbce protein_coding retained_intron MGP_C3HHeJ_T0035915.1 MGP_C3HHeJ_G0019952.1 mouse_genomes_project 13 1268099 1280566 + MGP_C3HHeJ_P0035915 Akr1c21 protein_coding protein_coding MGP_C3HHeJ_T0035916.1 MGP_C3HHeJ_G0019952.1 mouse_genomes_project 13 1271181 1275365 + Akr1c21 protein_coding retained_intron MGP_C3HHeJ_T0006474.1 MGP_C3HHeJ_G0005367.1 mouse_genomes_project 13 39443218 39453666 + Gm26877 lincRNA lincRNA MGP_C3HHeJ_T0036405.1 MGP_C3HHeJ_G0020189.1 mouse_genomes_project 13 31493779 31503912 + MGP_C3HHeJ_P0036405 Serpinb6d protein_coding protein_coding MGP_C3HHeJ_T0098893.1 MGP_C3HHeJ_G0037087.1 mouse_genomes_project 13 41572601 41572710 - Gm26064 snRNA snRNA MGP_C3HHeJ_T0037276.1 MGP_C3HHeJ_G0020496.1 mouse_genomes_project 13 73411960 73429587 - MGP_C3HHeJ_P0037276 Slc6a18 protein_coding protein_coding MGP_C3HHeJ_T0037277.1 MGP_C3HHeJ_G0020496.1 mouse_genomes_project 13 73411960 73429587 - MGP_C3HHeJ_P0037277 Slc6a18 protein_coding protein_coding MGP_C3HHeJ_T0037278.1 MGP_C3HHeJ_G0020496.1 mouse_genomes_project 13 73411960 73429587 - MGP_C3HHeJ_P0037278 Slc6a18 protein_coding protein_coding MGP_C3HHeJ_T0037279.1 MGP_C3HHeJ_G0020496.1 mouse_genomes_project 13 73415683 73429493 - MGP_C3HHeJ_P0037279 Slc6a18 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036275.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22009963 22100266 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0036276.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22009963 22104103 + MGP_C3HHeJ_P0036276 Fam65b protein_coding protein_coding MGP_C3HHeJ_T0036277.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22009980 22103999 + MGP_C3HHeJ_P0036277 Fam65b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036278.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22034003 22070692 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0036279.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22034037 22095606 + MGP_C3HHeJ_P0036279 Fam65b protein_coding protein_coding MGP_C3HHeJ_T0036280.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22034049 22104103 + MGP_C3HHeJ_P0036280 Fam65b protein_coding protein_coding MGP_C3HHeJ_T0036281.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22034066 22093831 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0036282.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22034215 22134407 + MGP_C3HHeJ_P0036282 Fam65b protein_coding protein_coding MGP_C3HHeJ_T0036283.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22071625 22076739 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0036284.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22074191 22076735 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0036285.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22086678 22092165 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0036286.1 MGP_C3HHeJ_G0020129.1 mouse_genomes_project 13 22109402 22115718 + Fam65b protein_coding retained_intron MGP_C3HHeJ_T0037077.1 MGP_C3HHeJ_G0020401.1 mouse_genomes_project 13 59934970 59937708 - MGP_C3HHeJ_P0037077 Tpbpb protein_coding protein_coding MGP_C3HHeJ_T0037763.1 MGP_C3HHeJ_G0020640.1 mouse_genomes_project 13 104538276 104561862 - MGP_C3HHeJ_P0037763 Srek1 protein_coding protein_coding MGP_C3HHeJ_T0036897.1 MGP_C3HHeJ_G0020346.1 mouse_genomes_project 13 54271125 54287171 + MGP_C3HHeJ_P0036897 Grk6 protein_coding protein_coding MGP_C3HHeJ_T0036898.1 MGP_C3HHeJ_G0020346.1 mouse_genomes_project 13 54271125 54288860 + MGP_C3HHeJ_P0036898 Grk6 protein_coding protein_coding MGP_C3HHeJ_T0036899.1 MGP_C3HHeJ_G0020346.1 mouse_genomes_project 13 54271261 54287431 + MGP_C3HHeJ_P0036899 Grk6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036257.1 MGP_C3HHeJ_G0020126.1 mouse_genomes_project 13 21341076 21379358 - MGP_C3HHeJ_P0036257 Scgn protein_coding protein_coding MGP_C3HHeJ_T0036258.1 MGP_C3HHeJ_G0020126.1 mouse_genomes_project 13 21349739 21354792 - Scgn protein_coding processed_transcript MGP_C3HHeJ_T0035994.1 MGP_C3HHeJ_G0019971.1 mouse_genomes_project 13 9088957 9168319 - MGP_C3HHeJ_P0035994 Mtr protein_coding unknown_likely_coding MGP_C3HHeJ_T0037312.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74096874 74123673 - MGP_C3HHeJ_P0037312 Sdha protein_coding protein_coding MGP_C3HHeJ_T0037313.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74097352 74098875 - Sdha protein_coding retained_intron MGP_C3HHeJ_T0037314.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74101048 74102225 - Sdha protein_coding retained_intron MGP_C3HHeJ_T0037315.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74111247 74123595 - Sdha protein_coding processed_transcript MGP_C3HHeJ_T0037316.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74112780 74113543 - Sdha protein_coding retained_intron MGP_C3HHeJ_T0037317.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74117022 74123632 - Sdha protein_coding retained_intron MGP_C3HHeJ_T0037318.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74118490 74123550 - Sdha protein_coding processed_transcript MGP_C3HHeJ_T0037319.1 MGP_C3HHeJ_G0020510.1 mouse_genomes_project 13 74118529 74123628 - Sdha protein_coding processed_transcript MGP_C3HHeJ_T0036295.1 MGP_C3HHeJ_G0020133.1 mouse_genomes_project 13 22238886 22250831 + MGP_C3HHeJ_P0036295 Tdp2 protein_coding protein_coding MGP_C3HHeJ_T0036296.1 MGP_C3HHeJ_G0020133.1 mouse_genomes_project 13 22239029 22245465 + Tdp2 protein_coding processed_transcript MGP_C3HHeJ_T0037343.1 MGP_C3HHeJ_G0020524.1 mouse_genomes_project 13 75985392 76080604 + MGP_C3HHeJ_P0037343 Ttc37 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037359.1 MGP_C3HHeJ_G0020527.1 mouse_genomes_project 13 77032929 77495848 + MGP_C3HHeJ_P0037359 2210408I21Rik protein_coding protein_coding MGP_C3HHeJ_T0006443.1 MGP_C3HHeJ_G0005346.1 mouse_genomes_project 13 26657730 26667524 + Gm26735 lincRNA lincRNA MGP_C3HHeJ_T0100149.1 MGP_C3HHeJ_G0038343.1 mouse_genomes_project 13 48117848 48117970 + Gm23482 snoRNA snoRNA MGP_C3HHeJ_T0036481.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35693772 35818169 + MGP_C3HHeJ_P0036481 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036482.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35744817 35818146 + MGP_C3HHeJ_P0036482 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036483.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35744881 35860514 + MGP_C3HHeJ_P0036483 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036484.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35745157 35876993 + MGP_C3HHeJ_P0036484 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036485.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35745774 35872017 + MGP_C3HHeJ_P0036485 Rreb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036486.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35745774 35857668 + MGP_C3HHeJ_P0036486 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036487.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35746235 35857670 + MGP_C3HHeJ_P0036487 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036488.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35781345 35818234 + MGP_C3HHeJ_P0036488 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036489.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35812753 35876995 + MGP_C3HHeJ_P0036489 Rreb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036490.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35813190 35876987 + MGP_C3HHeJ_P0036490 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036491.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35819471 35876999 + MGP_C3HHeJ_P0036491 Rreb1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036492.1 MGP_C3HHeJ_G0020215.1 mouse_genomes_project 13 35872008 35874199 + MGP_C3HHeJ_P0036492 Rreb1 protein_coding protein_coding MGP_C3HHeJ_T0036671.1 MGP_C3HHeJ_G0020282.1 mouse_genomes_project 13 47650575 47699814 - MGP_C3HHeJ_P0036671 Fgd3 protein_coding protein_coding MGP_C3HHeJ_T0036672.1 MGP_C3HHeJ_G0020282.1 mouse_genomes_project 13 47652131 47688025 - MGP_C3HHeJ_P0036672 Fgd3 protein_coding protein_coding MGP_C3HHeJ_T0036673.1 MGP_C3HHeJ_G0020282.1 mouse_genomes_project 13 47662395 47710817 - MGP_C3HHeJ_P0036673 Fgd3 protein_coding protein_coding MGP_C3HHeJ_T0037303.1 MGP_C3HHeJ_G0020506.1 mouse_genomes_project 13 73889052 73933651 + MGP_C3HHeJ_P0037303 Slc9a3 protein_coding protein_coding MGP_C3HHeJ_T0037304.1 MGP_C3HHeJ_G0020506.1 mouse_genomes_project 13 73889052 73936126 + MGP_C3HHeJ_P0037304 Slc9a3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006506.1 MGP_C3HHeJ_G0005387.1 mouse_genomes_project 13 57096937 57097853 + 1700066J03Rik lincRNA lincRNA MGP_C3HHeJ_T0012739.1 MGP_C3HHeJ_G0010843.1 mouse_genomes_project 13 5735273 5735909 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009853.1 MGP_C3HHeJ_G0007986.1 mouse_genomes_project 13 56956741 56956817 - Mir874 miRNA miRNA MGP_C3HHeJ_T0036778.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53328680 53342659 - 4833439L19Rik protein_coding processed_transcript MGP_C3HHeJ_T0036779.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53328896 53342681 - MGP_C3HHeJ_P0036779 4833439L19Rik protein_coding protein_coding MGP_C3HHeJ_T0036780.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53333527 53342617 - 4833439L19Rik protein_coding retained_intron MGP_C3HHeJ_T0036781.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53333701 53342664 - 4833439L19Rik protein_coding retained_intron MGP_C3HHeJ_T0036782.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53333920 53342656 - MGP_C3HHeJ_P0036782 4833439L19Rik protein_coding protein_coding MGP_C3HHeJ_T0036783.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53338904 53342670 - 4833439L19Rik protein_coding retained_intron MGP_C3HHeJ_T0036784.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53339026 53342682 - MGP_C3HHeJ_P0036784 4833439L19Rik protein_coding protein_coding MGP_C3HHeJ_T0036785.1 MGP_C3HHeJ_G0020319.1 mouse_genomes_project 13 53339041 53342651 - MGP_C3HHeJ_P0036785 4833439L19Rik protein_coding protein_coding MGP_C3HHeJ_T0100162.1 MGP_C3HHeJ_G0038356.1 mouse_genomes_project 13 79063084 79063228 + Gm25383 snoRNA snoRNA MGP_C3HHeJ_T0036326.1 MGP_C3HHeJ_G0020148.1 mouse_genomes_project 13 24842558 24852873 + MGP_C3HHeJ_P0036326 Prl8a2 protein_coding protein_coding MGP_C3HHeJ_T0036327.1 MGP_C3HHeJ_G0020148.1 mouse_genomes_project 13 24842564 24852861 + MGP_C3HHeJ_P0036327 Prl8a2 protein_coding protein_coding MGP_C3HHeJ_T0037596.1 MGP_C3HHeJ_G0020593.1 mouse_genomes_project 13 96838587 96859601 - Ankdd1b protein_coding processed_transcript MGP_C3HHeJ_T0037597.1 MGP_C3HHeJ_G0020593.1 mouse_genomes_project 13 96838899 96894302 - MGP_C3HHeJ_P0037597 Ankdd1b protein_coding protein_coding MGP_C3HHeJ_T0037598.1 MGP_C3HHeJ_G0020593.1 mouse_genomes_project 13 96839210 96858960 - Ankdd1b protein_coding retained_intron MGP_C3HHeJ_T0037599.1 MGP_C3HHeJ_G0020593.1 mouse_genomes_project 13 96839548 96858926 - MGP_C3HHeJ_P0037599 Ankdd1b protein_coding protein_coding MGP_C3HHeJ_T0037600.1 MGP_C3HHeJ_G0020593.1 mouse_genomes_project 13 96858917 96869320 - Ankdd1b protein_coding retained_intron MGP_C3HHeJ_T0037601.1 MGP_C3HHeJ_G0020593.1 mouse_genomes_project 13 96867642 96894340 - MGP_C3HHeJ_P0037601 Ankdd1b protein_coding protein_coding MGP_C3HHeJ_T0037041.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58578179 58592701 + MGP_C3HHeJ_P0037041 Naa35 protein_coding protein_coding MGP_C3HHeJ_T0037042.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58578215 58627676 + MGP_C3HHeJ_P0037042 Naa35 protein_coding protein_coding MGP_C3HHeJ_T0037043.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58578314 58601722 + MGP_C3HHeJ_P0037043 Naa35 protein_coding protein_coding MGP_C3HHeJ_T0037044.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58579090 58617392 + MGP_C3HHeJ_P0037044 Naa35 protein_coding protein_coding MGP_C3HHeJ_T0037045.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58588269 58593174 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0037046.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58591026 58610895 + MGP_C3HHeJ_P0037046 Naa35 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037047.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58602167 58620508 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0037048.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58602292 58618323 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0037049.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58602327 58618349 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0037050.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58602412 58617464 + MGP_C3HHeJ_P0037050 Naa35 protein_coding protein_coding MGP_C3HHeJ_T0037051.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58610861 58627627 + Naa35 protein_coding processed_transcript MGP_C3HHeJ_T0037052.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58610911 58618539 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0037053.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58610912 58620830 + MGP_C3HHeJ_P0037053 Naa35 protein_coding protein_coding MGP_C3HHeJ_T0037054.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58617318 58621822 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0037055.1 MGP_C3HHeJ_G0020387.1 mouse_genomes_project 13 58625599 58627514 + Naa35 protein_coding retained_intron MGP_C3HHeJ_T0036104.1 MGP_C3HHeJ_G0020018.1 mouse_genomes_project 13 18610951 18617948 + MGP_C3HHeJ_P0036104 Zscan12 protein_coding protein_coding MGP_C3HHeJ_T0036105.1 MGP_C3HHeJ_G0020018.1 mouse_genomes_project 13 18611412 18617948 + MGP_C3HHeJ_P0036105 Zscan12 protein_coding protein_coding MGP_C3HHeJ_T0036189.1 MGP_C3HHeJ_G0020074.1 mouse_genomes_project 13 19762926 19763829 + MGP_C3HHeJ_P0036189 Vmn1r201 protein_coding protein_coding MGP_C3HHeJ_T0036230.1 MGP_C3HHeJ_G0020107.1 mouse_genomes_project 13 20991227 20992514 - MGP_C3HHeJ_P0036230 Hist1h1e protein_coding protein_coding MGP_C3HHeJ_T0003435.1 MGP_C3HHeJ_G0003132.1 mouse_genomes_project 13 105506762 105516827 + 2610204G07Rik antisense antisense MGP_C3HHeJ_T0012813.1 MGP_C3HHeJ_G0010917.1 mouse_genomes_project 13 76599538 76600831 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006472.1 MGP_C3HHeJ_G0005365.1 mouse_genomes_project 13 36931667 36937329 - Gm26514 lincRNA lincRNA MGP_C3HHeJ_T0009848.1 MGP_C3HHeJ_G0007981.1 mouse_genomes_project 13 49252947 49253056 - Gm23952 miRNA miRNA MGP_C3HHeJ_T0036763.1 MGP_C3HHeJ_G0020312.1 mouse_genomes_project 13 52250176 52250533 + MGP_C3HHeJ_P0036763 Gm5449 protein_coding protein_coding MGP_C3HHeJ_T0037823.1 MGP_C3HHeJ_G0020660.1 mouse_genomes_project 13 108642254 108815749 - MGP_C3HHeJ_P0037823 Zswim6 protein_coding protein_coding MGP_C3HHeJ_T0101699.1 MGP_C3HHeJ_G0039664.1 mouse_genomes_project 13 20125660 20126700 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006535.1 MGP_C3HHeJ_G0005407.1 mouse_genomes_project 13 94487332 94490003 - Gm15907 lincRNA lincRNA MGP_C3HHeJ_T0037668.1 MGP_C3HHeJ_G0020618.1 mouse_genomes_project 13 99959363 100029270 + MGP_C3HHeJ_P0037668 Mrps27 protein_coding protein_coding MGP_C3HHeJ_T0003430.1 MGP_C3HHeJ_G0003129.1 mouse_genomes_project 13 100730679 100732224 - BC001981 antisense antisense MGP_C3HHeJ_T0003431.1 MGP_C3HHeJ_G0003129.1 mouse_genomes_project 13 100731919 100732222 - BC001981 antisense antisense MGP_C3HHeJ_T0037137.1 MGP_C3HHeJ_G0020422.1 mouse_genomes_project 13 63425075 63450457 + MGP_C3HHeJ_P0037137 Habp4 protein_coding protein_coding MGP_C3HHeJ_T0037864.1 MGP_C3HHeJ_G0020668.1 mouse_genomes_project 13 111342825 111347408 - MGP_C3HHeJ_P0037864 Gapt protein_coding protein_coding MGP_C3HHeJ_T0098912.1 MGP_C3HHeJ_G0037106.1 mouse_genomes_project 13 121199869 121199977 + Gm23308 snRNA snRNA MGP_C3HHeJ_T0098902.1 MGP_C3HHeJ_G0037096.1 mouse_genomes_project 13 80079963 80080091 + Gm24635 snRNA snRNA MGP_C3HHeJ_T0003363.1 MGP_C3HHeJ_G0003089.1 mouse_genomes_project 13 19234073 19240666 - Gm11280 antisense antisense MGP_C3HHeJ_T0036937.1 MGP_C3HHeJ_G0020358.1 mouse_genomes_project 13 54555937 54568587 + MGP_C3HHeJ_P0036937 Txndc15 protein_coding protein_coding MGP_C3HHeJ_T0009824.1 MGP_C3HHeJ_G0007957.1 mouse_genomes_project 13 2761807 2761904 - Gm26259 miRNA miRNA MGP_C3HHeJ_T0036540.1 MGP_C3HHeJ_G0020239.1 mouse_genomes_project 13 39698114 39734004 + MGP_C3HHeJ_P0036540 Tmem170b protein_coding protein_coding MGP_C3HHeJ_T0011265.1 MGP_C3HHeJ_G0009398.1 mouse_genomes_project 13 99651457 99651710 - Gm24733 misc_RNA misc_RNA MGP_C3HHeJ_T0036255.1 MGP_C3HHeJ_G0020124.1 mouse_genomes_project 13 21316970 21317354 - MGP_C3HHeJ_P0036255 Hist1h2ba protein_coding protein_coding MGP_C3HHeJ_T0009841.1 MGP_C3HHeJ_G0007974.1 mouse_genomes_project 13 38936618 38936690 + Mir5124a miRNA miRNA MGP_C3HHeJ_T0036360.1 MGP_C3HHeJ_G0020164.1 mouse_genomes_project 13 27653169 27732983 - MGP_C3HHeJ_P0036360 E2f3 protein_coding protein_coding MGP_C3HHeJ_T0036361.1 MGP_C3HHeJ_G0020164.1 mouse_genomes_project 13 27665378 27731534 - MGP_C3HHeJ_P0036361 E2f3 protein_coding protein_coding MGP_C3HHeJ_T0012817.1 MGP_C3HHeJ_G0010921.1 mouse_genomes_project 13 80016655 80017819 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006490.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52117200 52121500 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006491.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52117216 52178054 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006492.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52117232 52179151 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006493.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52117640 52118882 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006494.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52117834 52122573 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006495.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52117834 52127028 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006496.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52118878 52122589 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0006497.1 MGP_C3HHeJ_G0005379.1 mouse_genomes_project 13 52124842 52127509 + Gm2762 lincRNA lincRNA MGP_C3HHeJ_T0036056.1 MGP_C3HHeJ_G0019999.1 mouse_genomes_project 13 14884408 14985847 - MGP_C3HHeJ_P0036056 Cdk13 protein_coding protein_coding MGP_C3HHeJ_T0036093.1 MGP_C3HHeJ_G0020013.1 mouse_genomes_project 13 18384628 18385692 - MGP_C3HHeJ_P0036093 Olfr1368 protein_coding protein_coding MGP_C3HHeJ_T0036094.1 MGP_C3HHeJ_G0020013.1 mouse_genomes_project 13 18385254 18388482 - MGP_C3HHeJ_P0036094 Olfr1368 protein_coding protein_coding MGP_C3HHeJ_T0036989.1 MGP_C3HHeJ_G0020378.1 mouse_genomes_project 13 57125890 57165332 - MGP_C3HHeJ_P0036989 Ubqln1 protein_coding protein_coding MGP_C3HHeJ_T0036990.1 MGP_C3HHeJ_G0020378.1 mouse_genomes_project 13 57125890 57165332 - MGP_C3HHeJ_P0036990 Ubqln1 protein_coding protein_coding MGP_C3HHeJ_T0036178.1 MGP_C3HHeJ_G0020063.1 mouse_genomes_project 13 19382244 19382981 - MGP_C3HHeJ_P0036178 protein_coding protein_coding MGP_C3HHeJ_T0097859.1 MGP_C3HHeJ_G0036071.1 mouse_genomes_project 13 91449795 91450222 + pseudogene pseudogene MGP_C3HHeJ_T0012796.1 MGP_C3HHeJ_G0010900.1 mouse_genomes_project 13 62008925 62009261 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036194.1 MGP_C3HHeJ_G0020079.1 mouse_genomes_project 13 19915677 19918634 - MGP_C3HHeJ_P0036194 Vmn1r209 protein_coding protein_coding MGP_C3HHeJ_T0012785.1 MGP_C3HHeJ_G0010889.1 mouse_genomes_project 13 29656320 29657399 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036330.1 MGP_C3HHeJ_G0020150.1 mouse_genomes_project 13 24943649 24949641 - MGP_C3HHeJ_P0036330 Prl8a6 protein_coding protein_coding MGP_C3HHeJ_T0036331.1 MGP_C3HHeJ_G0020150.1 mouse_genomes_project 13 24943649 24949601 - MGP_C3HHeJ_P0036331 Prl8a6 protein_coding protein_coding MGP_C3HHeJ_T0036332.1 MGP_C3HHeJ_G0020150.1 mouse_genomes_project 13 24943836 24949550 - MGP_C3HHeJ_P0036332 Prl8a6 protein_coding protein_coding MGP_C3HHeJ_T0009829.1 MGP_C3HHeJ_G0007962.1 mouse_genomes_project 13 18696763 18696844 + Mir1896 miRNA miRNA MGP_C3HHeJ_T0037262.1 MGP_C3HHeJ_G0020489.1 mouse_genomes_project 13 72993426 73003251 + MGP_C3HHeJ_P0037262 Irx4 protein_coding protein_coding MGP_C3HHeJ_T0037263.1 MGP_C3HHeJ_G0020489.1 mouse_genomes_project 13 72993444 73003251 + MGP_C3HHeJ_P0037263 Irx4 protein_coding protein_coding MGP_C3HHeJ_T0098884.1 MGP_C3HHeJ_G0037078.1 mouse_genomes_project 13 21878556 21878659 - Gm22013 snRNA snRNA MGP_C3HHeJ_T0037774.1 MGP_C3HHeJ_G0020644.1 mouse_genomes_project 13 104939321 104979720 - MGP_C3HHeJ_P0037774 Trappc13 protein_coding protein_coding MGP_C3HHeJ_T0037775.1 MGP_C3HHeJ_G0020644.1 mouse_genomes_project 13 104939328 104979676 - MGP_C3HHeJ_P0037775 Trappc13 protein_coding protein_coding MGP_C3HHeJ_T0037776.1 MGP_C3HHeJ_G0020644.1 mouse_genomes_project 13 104941574 104979674 - MGP_C3HHeJ_P0037776 Trappc13 protein_coding protein_coding MGP_C3HHeJ_T0037777.1 MGP_C3HHeJ_G0020644.1 mouse_genomes_project 13 104942210 104979658 - MGP_C3HHeJ_P0037777 Trappc13 protein_coding protein_coding MGP_C3HHeJ_T0037778.1 MGP_C3HHeJ_G0020644.1 mouse_genomes_project 13 104965992 104979710 - Trappc13 protein_coding retained_intron MGP_C3HHeJ_T0037779.1 MGP_C3HHeJ_G0020644.1 mouse_genomes_project 13 104973290 104979690 - Trappc13 protein_coding processed_transcript MGP_C3HHeJ_T0036509.1 MGP_C3HHeJ_G0020223.1 mouse_genomes_project 13 36567819 36601491 - MGP_C3HHeJ_P0036509 Bloc1s5 protein_coding protein_coding MGP_C3HHeJ_T0036449.1 MGP_C3HHeJ_G0020204.1 mouse_genomes_project 13 32769022 32801538 + MGP_C3HHeJ_P0036449 4933417A18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036450.1 MGP_C3HHeJ_G0020204.1 mouse_genomes_project 13 32769022 32798860 + MGP_C3HHeJ_P0036450 4933417A18Rik protein_coding protein_coding MGP_C3HHeJ_T0037063.1 MGP_C3HHeJ_G0020392.1 mouse_genomes_project 13 58758202 58773967 - MGP_C3HHeJ_P0037063 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037064.1 MGP_C3HHeJ_G0020392.1 mouse_genomes_project 13 58758202 58774073 - MGP_C3HHeJ_P0037064 protein_coding protein_coding MGP_C3HHeJ_T0037065.1 MGP_C3HHeJ_G0020392.1 mouse_genomes_project 13 58762544 58774039 - protein_coding retained_intron MGP_C3HHeJ_T0036570.1 MGP_C3HHeJ_G0020250.1 mouse_genomes_project 13 41687152 41707020 - MGP_C3HHeJ_P0036570 Mcur1 protein_coding protein_coding MGP_C3HHeJ_T0036958.1 MGP_C3HHeJ_G0020369.1 mouse_genomes_project 13 55398185 55403175 + MGP_C3HHeJ_P0036958 Fbxl21 protein_coding protein_coding MGP_C3HHeJ_T0036959.1 MGP_C3HHeJ_G0020369.1 mouse_genomes_project 13 55398204 55413715 + MGP_C3HHeJ_P0036959 Fbxl21 protein_coding protein_coding MGP_C3HHeJ_T0036960.1 MGP_C3HHeJ_G0020369.1 mouse_genomes_project 13 55398221 55413603 + MGP_C3HHeJ_P0036960 Fbxl21 protein_coding protein_coding MGP_C3HHeJ_T0036961.1 MGP_C3HHeJ_G0020369.1 mouse_genomes_project 13 55398226 55405804 + MGP_C3HHeJ_P0036961 Fbxl21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036605.1 MGP_C3HHeJ_G0020263.1 mouse_genomes_project 13 44942223 44951988 + MGP_C3HHeJ_P0036605 protein_coding protein_coding MGP_C3HHeJ_T0036606.1 MGP_C3HHeJ_G0020263.1 mouse_genomes_project 13 44943924 44946548 + protein_coding retained_intron MGP_C3HHeJ_T0036956.1 MGP_C3HHeJ_G0020367.1 mouse_genomes_project 13 55312338 55345314 + MGP_C3HHeJ_P0036956 Slc25a48 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012736.1 MGP_C3HHeJ_G0010840.1 mouse_genomes_project 13 71421 72206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098895.1 MGP_C3HHeJ_G0037089.1 mouse_genomes_project 13 43221180 43221284 - Gm23104 snRNA snRNA MGP_C3HHeJ_T0037785.1 MGP_C3HHeJ_G0020647.1 mouse_genomes_project 13 105029835 105052984 + MGP_C3HHeJ_P0037785 Cenpk protein_coding protein_coding MGP_C3HHeJ_T0037786.1 MGP_C3HHeJ_G0020647.1 mouse_genomes_project 13 105030268 105055442 + MGP_C3HHeJ_P0037786 Cenpk protein_coding protein_coding MGP_C3HHeJ_T0012758.1 MGP_C3HHeJ_G0010862.1 mouse_genomes_project 13 20361060 20361524 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101696.1 MGP_C3HHeJ_G0039661.1 mouse_genomes_project 13 19930458 19931183 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100170.1 MGP_C3HHeJ_G0038364.1 mouse_genomes_project 13 106069733 106069863 - Gm25631 snoRNA snoRNA MGP_C3HHeJ_T0037087.1 MGP_C3HHeJ_G0020410.1 mouse_genomes_project 13 60600737 60607291 - MGP_C3HHeJ_P0037087 Ctsm protein_coding protein_coding MGP_C3HHeJ_T0036841.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53576214 53583615 + MGP_C3HHeJ_P0036841 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036842.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53576240 53583607 + MGP_C3HHeJ_P0036842 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036843.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53576300 53583025 + MGP_C3HHeJ_P0036843 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036844.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53576432 53582956 + MGP_C3HHeJ_P0036844 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036845.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53576432 53583060 + MGP_C3HHeJ_P0036845 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036846.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53576482 53581986 + MGP_C3HHeJ_P0036846 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036847.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53579577 53583003 + MGP_C3HHeJ_P0036847 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036848.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53579708 53583614 + MGP_C3HHeJ_P0036848 Tspan17 protein_coding protein_coding MGP_C3HHeJ_T0036849.1 MGP_C3HHeJ_G0020330.1 mouse_genomes_project 13 53582221 53583607 + Tspan17 protein_coding retained_intron MGP_C3HHeJ_T0037192.1 MGP_C3HHeJ_G0020452.1 mouse_genomes_project 13 66764860 66792044 - MGP_C3HHeJ_P0037192 Zfp595 protein_coding protein_coding MGP_C3HHeJ_T0037475.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91704183 91950990 + Ssbp2 protein_coding processed_transcript MGP_C3HHeJ_T0037476.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91705757 91965480 + MGP_C3HHeJ_P0037476 Ssbp2 protein_coding protein_coding MGP_C3HHeJ_T0037477.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91705798 91963290 + MGP_C3HHeJ_P0037477 Ssbp2 protein_coding protein_coding MGP_C3HHeJ_T0037478.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91705834 91795046 + MGP_C3HHeJ_P0037478 Ssbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037479.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91705867 91935582 + Ssbp2 protein_coding retained_intron MGP_C3HHeJ_T0037480.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91705870 91818980 + Ssbp2 protein_coding retained_intron MGP_C3HHeJ_T0037481.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91705888 91776593 + Ssbp2 protein_coding retained_intron MGP_C3HHeJ_T0037482.1 MGP_C3HHeJ_G0020551.1 mouse_genomes_project 13 91933609 91953432 + Ssbp2 protein_coding retained_intron MGP_C3HHeJ_T0101717.1 MGP_C3HHeJ_G0039682.1 mouse_genomes_project 13 30672733 30675945 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036957.1 MGP_C3HHeJ_G0020368.1 mouse_genomes_project 13 55354320 55357294 - MGP_C3HHeJ_P0036957 Il9 protein_coding protein_coding MGP_C3HHeJ_T0098875.1 MGP_C3HHeJ_G0037069.1 mouse_genomes_project 13 10427960 10428060 - Gm26133 snRNA snRNA MGP_C3HHeJ_T0036806.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53465816 53474225 - MGP_C3HHeJ_P0036806 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036807.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53465818 53474511 - MGP_C3HHeJ_P0036807 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036808.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53465827 53480261 - MGP_C3HHeJ_P0036808 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036809.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53465827 53480321 - MGP_C3HHeJ_P0036809 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036810.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53465831 53474605 - MGP_C3HHeJ_P0036810 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036811.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53467982 53474676 - MGP_C3HHeJ_P0036811 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036812.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53469064 53470490 - Rnf44 protein_coding retained_intron MGP_C3HHeJ_T0036813.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53469469 53480260 - MGP_C3HHeJ_P0036813 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036814.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53469545 53474071 - MGP_C3HHeJ_P0036814 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036815.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53469902 53470825 - Rnf44 protein_coding retained_intron MGP_C3HHeJ_T0036816.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470027 53474617 - MGP_C3HHeJ_P0036816 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036817.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470123 53474674 - MGP_C3HHeJ_P0036817 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036818.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470177 53474691 - MGP_C3HHeJ_P0036818 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036819.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470381 53480226 - MGP_C3HHeJ_P0036819 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036820.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470409 53474225 - MGP_C3HHeJ_P0036820 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0036821.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470447 53473669 - Rnf44 protein_coding processed_transcript MGP_C3HHeJ_T0036822.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470458 53480264 - Rnf44 protein_coding processed_transcript MGP_C3HHeJ_T0036823.1 MGP_C3HHeJ_G0020325.1 mouse_genomes_project 13 53470467 53474690 - MGP_C3HHeJ_P0036823 Rnf44 protein_coding protein_coding MGP_C3HHeJ_T0006476.1 MGP_C3HHeJ_G0005369.1 mouse_genomes_project 13 42296118 42300103 + Gm5083 lincRNA lincRNA MGP_C3HHeJ_T0006477.1 MGP_C3HHeJ_G0005369.1 mouse_genomes_project 13 42296245 42300103 + Gm5083 lincRNA lincRNA MGP_C3HHeJ_T0037072.1 MGP_C3HHeJ_G0020397.1 mouse_genomes_project 13 59818746 59823218 - MGP_C3HHeJ_P0037072 BC051665 protein_coding protein_coding MGP_C3HHeJ_T0009843.1 MGP_C3HHeJ_G0007976.1 mouse_genomes_project 13 46892188 46892291 - Mirlet7d miRNA miRNA MGP_C3HHeJ_T0009859.1 MGP_C3HHeJ_G0007992.1 mouse_genomes_project 13 62009732 62009815 + Gm24588 miRNA miRNA MGP_C3HHeJ_T0036505.1 MGP_C3HHeJ_G0020221.1 mouse_genomes_project 13 36295720 36452137 + MGP_C3HHeJ_P0036505 Bmp6 protein_coding protein_coding MGP_C3HHeJ_T0037897.1 MGP_C3HHeJ_G0020679.1 mouse_genomes_project 13 113916653 113987591 + MGP_C3HHeJ_P0037897 Plpp1 protein_coding protein_coding MGP_C3HHeJ_T0037898.1 MGP_C3HHeJ_G0020679.1 mouse_genomes_project 13 113916682 113987357 + MGP_C3HHeJ_P0037898 Plpp1 protein_coding protein_coding MGP_C3HHeJ_T0037112.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62741766 62802576 - MGP_C3HHeJ_P0037112 Ptch1 protein_coding protein_coding MGP_C3HHeJ_T0037113.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62741767 62810470 - MGP_C3HHeJ_P0037113 Ptch1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037114.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62748296 62749027 - Ptch1 protein_coding retained_intron MGP_C3HHeJ_T0037115.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62752599 62800829 - MGP_C3HHeJ_P0037115 Ptch1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037116.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62780117 62802288 - MGP_C3HHeJ_P0037116 Ptch1 protein_coding protein_coding MGP_C3HHeJ_T0037117.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62780117 62801340 - MGP_C3HHeJ_P0037117 Ptch1 protein_coding protein_coding MGP_C3HHeJ_T0037118.1 MGP_C3HHeJ_G0020417.1 mouse_genomes_project 13 62780117 62810608 - MGP_C3HHeJ_P0037118 Ptch1 protein_coding protein_coding MGP_C3HHeJ_T0036385.1 MGP_C3HHeJ_G0020178.1 mouse_genomes_project 13 30505209 30590577 - MGP_C3HHeJ_P0036385 Mylk4 protein_coding protein_coding MGP_C3HHeJ_T0036386.1 MGP_C3HHeJ_G0020178.1 mouse_genomes_project 13 30508862 30590514 - MGP_C3HHeJ_P0036386 Mylk4 protein_coding protein_coding MGP_C3HHeJ_T0036387.1 MGP_C3HHeJ_G0020178.1 mouse_genomes_project 13 30513065 30544231 - MGP_C3HHeJ_P0036387 Mylk4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036388.1 MGP_C3HHeJ_G0020178.1 mouse_genomes_project 13 30575309 30592752 - Mylk4 protein_coding processed_transcript MGP_C3HHeJ_T0037590.1 MGP_C3HHeJ_G0020589.1 mouse_genomes_project 13 96079179 96085035 + MGP_C3HHeJ_P0037590 F2rl2 protein_coding protein_coding MGP_C3HHeJ_T0036447.1 MGP_C3HHeJ_G0020202.1 mouse_genomes_project 13 32719557 32746854 + MGP_C3HHeJ_P0036447 Prpf4b protein_coding protein_coding MGP_C3HHeJ_T0012830.1 MGP_C3HHeJ_G0010934.1 mouse_genomes_project 13 107439735 107439981 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035965.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5904991 5983358 + MGP_C3HHeJ_P0035965 Larp4b protein_coding protein_coding MGP_C3HHeJ_T0035966.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5905017 5983550 + MGP_C3HHeJ_P0035966 Larp4b protein_coding protein_coding MGP_C3HHeJ_T0035967.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5905022 5935889 + MGP_C3HHeJ_P0035967 Larp4b protein_coding protein_coding MGP_C3HHeJ_T0035968.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5905092 5986722 + MGP_C3HHeJ_P0035968 Larp4b protein_coding protein_coding MGP_C3HHeJ_T0035969.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5947906 5955457 + Larp4b protein_coding processed_transcript MGP_C3HHeJ_T0035970.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5948126 5948892 + Larp4b protein_coding processed_transcript MGP_C3HHeJ_T0035971.1 MGP_C3HHeJ_G0019966.1 mouse_genomes_project 13 5980614 5985392 + Larp4b protein_coding retained_intron MGP_C3HHeJ_T0037920.1 MGP_C3HHeJ_G0020693.1 mouse_genomes_project 13 114938421 115309957 + MGP_C3HHeJ_P0037920 Arl15 protein_coding protein_coding MGP_C3HHeJ_T0035901.1 MGP_C3HHeJ_G0019946.1 mouse_genomes_project 13 794189 812185 - MGP_C3HHeJ_P0035901 Akr1c18 protein_coding protein_coding MGP_C3HHeJ_T0035902.1 MGP_C3HHeJ_G0019946.1 mouse_genomes_project 13 794189 812211 - MGP_C3HHeJ_P0035902 Akr1c18 protein_coding protein_coding MGP_C3HHeJ_T0009871.1 MGP_C3HHeJ_G0008004.1 mouse_genomes_project 13 92021483 92021572 + Gm27656 miRNA miRNA MGP_C3HHeJ_T0036738.1 MGP_C3HHeJ_G0020306.1 mouse_genomes_project 13 51269362 51340278 + MGP_C3HHeJ_P0036738 Syk protein_coding protein_coding MGP_C3HHeJ_T0036739.1 MGP_C3HHeJ_G0020306.1 mouse_genomes_project 13 51269626 51335109 + MGP_C3HHeJ_P0036739 Syk protein_coding protein_coding MGP_C3HHeJ_T0036740.1 MGP_C3HHeJ_G0020306.1 mouse_genomes_project 13 51269692 51299817 + Syk protein_coding retained_intron MGP_C3HHeJ_T0036741.1 MGP_C3HHeJ_G0020306.1 mouse_genomes_project 13 51283005 51340268 + MGP_C3HHeJ_P0036741 Syk protein_coding protein_coding MGP_C3HHeJ_T0036742.1 MGP_C3HHeJ_G0020306.1 mouse_genomes_project 13 51283111 51313275 + Syk protein_coding retained_intron MGP_C3HHeJ_T0036894.1 MGP_C3HHeJ_G0020344.1 mouse_genomes_project 13 54236081 54236495 - MGP_C3HHeJ_P0036894 Pfn3 protein_coding protein_coding MGP_C3HHeJ_T0036636.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46843160 46870371 - MGP_C3HHeJ_P0036636 Zfp169 protein_coding protein_coding MGP_C3HHeJ_T0036637.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46843172 46870329 - MGP_C3HHeJ_P0036637 Zfp169 protein_coding protein_coding MGP_C3HHeJ_T0036638.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46844715 46863934 - MGP_C3HHeJ_P0036638 Zfp169 protein_coding protein_coding MGP_C3HHeJ_T0036639.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46844967 46863934 - MGP_C3HHeJ_P0036639 Zfp169 protein_coding protein_coding MGP_C3HHeJ_T0036640.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46846765 46870345 - MGP_C3HHeJ_P0036640 Zfp169 protein_coding protein_coding MGP_C3HHeJ_T0036641.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46846843 46870361 - MGP_C3HHeJ_P0036641 Zfp169 protein_coding protein_coding MGP_C3HHeJ_T0036642.1 MGP_C3HHeJ_G0020272.1 mouse_genomes_project 13 46850964 46870386 - Zfp169 protein_coding retained_intron MGP_C3HHeJ_T0036569.1 MGP_C3HHeJ_G0020249.1 mouse_genomes_project 13 41549533 41628758 - MGP_C3HHeJ_P0036569 protein_coding protein_coding MGP_C3HHeJ_T0006534.1 MGP_C3HHeJ_G0005406.1 mouse_genomes_project 13 94276567 94278593 - Gm26527 lincRNA lincRNA MGP_C3HHeJ_T0006512.1 MGP_C3HHeJ_G0005391.1 mouse_genomes_project 13 67124048 67125626 - Gm37276 lincRNA lincRNA MGP_C3HHeJ_T0036765.1 MGP_C3HHeJ_G0020314.1 mouse_genomes_project 13 52822723 52864754 + MGP_C3HHeJ_P0036765 Sfxn1 protein_coding protein_coding MGP_C3HHeJ_T0037733.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102420856 102509677 - MGP_C3HHeJ_P0037733 Pik3r1 protein_coding protein_coding MGP_C3HHeJ_T0037734.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102423957 102433666 - MGP_C3HHeJ_P0037734 Pik3r1 protein_coding protein_coding MGP_C3HHeJ_T0037735.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102427857 102433612 - MGP_C3HHeJ_P0037735 Pik3r1 protein_coding protein_coding MGP_C3HHeJ_T0037736.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102429315 102435639 - MGP_C3HHeJ_P0037736 Pik3r1 protein_coding protein_coding MGP_C3HHeJ_T0037737.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102431170 102433379 - Pik3r1 protein_coding retained_intron MGP_C3HHeJ_T0037738.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102442487 102443143 - Pik3r1 protein_coding retained_intron MGP_C3HHeJ_T0037739.1 MGP_C3HHeJ_G0020637.1 mouse_genomes_project 13 102496229 102509673 - Pik3r1 protein_coding retained_intron MGP_C3HHeJ_T0037732.1 MGP_C3HHeJ_G0020636.1 mouse_genomes_project 13 101492377 101524153 - MGP_C3HHeJ_P0037732 Slc30a5 protein_coding protein_coding MGP_C3HHeJ_T0098889.1 MGP_C3HHeJ_G0037083.1 mouse_genomes_project 13 33508123 33508265 + Gm22126 snRNA snRNA MGP_C3HHeJ_T0100160.1 MGP_C3HHeJ_G0038354.1 mouse_genomes_project 13 76509489 76509621 - Gm24519 snoRNA snoRNA MGP_C3HHeJ_T0036157.1 MGP_C3HHeJ_G0020054.1 mouse_genomes_project 13 19050140 19117117 + MGP_C3HHeJ_P0036157 Hist1h2bq protein_coding protein_coding MGP_C3HHeJ_T0036158.1 MGP_C3HHeJ_G0020054.1 mouse_genomes_project 13 19050140 19117317 + MGP_C3HHeJ_P0036158 Hist1h2bq protein_coding protein_coding MGP_C3HHeJ_T0036018.1 MGP_C3HHeJ_G0019987.1 mouse_genomes_project 13 11128895 11130269 - MGP_C3HHeJ_P0036018 Gm18856 protein_coding protein_coding MGP_C3HHeJ_T0011252.1 MGP_C3HHeJ_G0009385.1 mouse_genomes_project 13 10963627 10963917 + Gm25271 misc_RNA misc_RNA MGP_C3HHeJ_T0037623.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97618953 97660611 + MGP_C3HHeJ_P0037623 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037624.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97618953 97636517 + MGP_C3HHeJ_P0037624 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037625.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97618993 97658803 + Gfm2 protein_coding retained_intron MGP_C3HHeJ_T0037626.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97618994 97660621 + MGP_C3HHeJ_P0037626 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037627.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97619001 97649046 + MGP_C3HHeJ_P0037627 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037628.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97619014 97625341 + Gfm2 protein_coding retained_intron MGP_C3HHeJ_T0037629.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97619018 97665365 + MGP_C3HHeJ_P0037629 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037630.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97619024 97627312 + MGP_C3HHeJ_P0037630 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037631.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97619056 97660621 + MGP_C3HHeJ_P0037631 Gfm2 protein_coding protein_coding MGP_C3HHeJ_T0037632.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97631388 97643733 + MGP_C3HHeJ_P0037632 Gfm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037633.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97641107 97660621 + Gfm2 protein_coding retained_intron MGP_C3HHeJ_T0037634.1 MGP_C3HHeJ_G0020601.1 mouse_genomes_project 13 97655618 97661656 + Gfm2 protein_coding retained_intron MGP_C3HHeJ_T0101686.1 MGP_C3HHeJ_G0039651.1 mouse_genomes_project 13 19363872 19364388 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017136.1 MGP_C3HHeJ_G0015017.1 mouse_genomes_project 13 58774227 58776198 + Etohd2 processed_transcript processed_transcript MGP_C3HHeJ_T0017137.1 MGP_C3HHeJ_G0015017.1 mouse_genomes_project 13 58774228 58777939 + Etohd2 processed_transcript processed_transcript MGP_C3HHeJ_T0000850.1 MGP_C3HHeJ_G0000790.1 mouse_genomes_project 13 46898820 46901210 - TEC TEC MGP_C3HHeJ_T0035905.1 MGP_C3HHeJ_G0019948.1 mouse_genomes_project 13 902750 922286 + MGP_C3HHeJ_P0035905 Akr1c19 protein_coding protein_coding MGP_C3HHeJ_T0035906.1 MGP_C3HHeJ_G0019948.1 mouse_genomes_project 13 907790 922285 + MGP_C3HHeJ_P0035906 Akr1c19 protein_coding protein_coding MGP_C3HHeJ_T0035907.1 MGP_C3HHeJ_G0019948.1 mouse_genomes_project 13 919253 922607 + Akr1c19 protein_coding processed_transcript MGP_C3HHeJ_T0036342.1 MGP_C3HHeJ_G0020157.1 mouse_genomes_project 13 25250038 25296774 - MGP_C3HHeJ_P0036342 Prl7d1 protein_coding protein_coding MGP_C3HHeJ_T0036343.1 MGP_C3HHeJ_G0020157.1 mouse_genomes_project 13 25296443 25296762 - Prl7d1 protein_coding processed_transcript MGP_C3HHeJ_T0000851.1 MGP_C3HHeJ_G0000791.1 mouse_genomes_project 13 50689523 50691677 - TEC TEC MGP_C3HHeJ_T0036516.1 MGP_C3HHeJ_G0020228.1 mouse_genomes_project 13 38773206 38787896 - MGP_C3HHeJ_P0036516 Tfap2a protein_coding protein_coding MGP_C3HHeJ_T0036517.1 MGP_C3HHeJ_G0020228.1 mouse_genomes_project 13 38774220 38792066 - MGP_C3HHeJ_P0036517 Tfap2a protein_coding protein_coding MGP_C3HHeJ_T0097854.1 MGP_C3HHeJ_G0036066.1 mouse_genomes_project 13 483933 515139 + pseudogene pseudogene MGP_C3HHeJ_T0003432.1 MGP_C3HHeJ_G0003130.1 mouse_genomes_project 13 103529681 103531336 + 1700099I09Rik antisense antisense MGP_C3HHeJ_T0003433.1 MGP_C3HHeJ_G0003130.1 mouse_genomes_project 13 103529696 103531302 + 1700099I09Rik antisense antisense MGP_C3HHeJ_T0012793.1 MGP_C3HHeJ_G0010897.1 mouse_genomes_project 13 53273602 53273987 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037525.1 MGP_C3HHeJ_G0020566.1 mouse_genomes_project 13 93325451 93427176 - MGP_C3HHeJ_P0037525 Cmya5 protein_coding protein_coding MGP_C3HHeJ_T0100145.1 MGP_C3HHeJ_G0038339.1 mouse_genomes_project 13 45042494 45042624 - Gm24620 snoRNA snoRNA MGP_C3HHeJ_T0037669.1 MGP_C3HHeJ_G0020619.1 mouse_genomes_project 13 100036701 100134111 - MGP_C3HHeJ_P0037669 Map1b protein_coding protein_coding MGP_C3HHeJ_T0101716.1 MGP_C3HHeJ_G0039681.1 mouse_genomes_project 13 25214933 25224407 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036647.1 MGP_C3HHeJ_G0020277.1 mouse_genomes_project 13 47251472 47344705 - MGP_C3HHeJ_P0036647 Fam120a protein_coding protein_coding MGP_C3HHeJ_T0036154.1 MGP_C3HHeJ_G0020051.1 mouse_genomes_project 13 19049476 19049869 - MGP_C3HHeJ_P0036154 Hist1h2ac protein_coding protein_coding MGP_C3HHeJ_T0006479.1 MGP_C3HHeJ_G0005371.1 mouse_genomes_project 13 42611680 42629504 + 1700029N11Rik lincRNA lincRNA MGP_C3HHeJ_T0006480.1 MGP_C3HHeJ_G0005371.1 mouse_genomes_project 13 42611695 42629507 + 1700029N11Rik lincRNA lincRNA MGP_C3HHeJ_T0098881.1 MGP_C3HHeJ_G0037075.1 mouse_genomes_project 13 18087796 18087920 + Gm25605 snRNA snRNA MGP_C3HHeJ_T0036594.1 MGP_C3HHeJ_G0020257.1 mouse_genomes_project 13 43707395 43747856 + MGP_C3HHeJ_P0036594 Gmpr protein_coding protein_coding MGP_C3HHeJ_T0036595.1 MGP_C3HHeJ_G0020257.1 mouse_genomes_project 13 43713907 43747372 + MGP_C3HHeJ_P0036595 Gmpr protein_coding protein_coding MGP_C3HHeJ_T0036596.1 MGP_C3HHeJ_G0020257.1 mouse_genomes_project 13 43740285 43744024 + Gmpr protein_coding retained_intron MGP_C3HHeJ_T0037452.1 MGP_C3HHeJ_G0020543.1 mouse_genomes_project 13 89753965 89829169 + MGP_C3HHeJ_P0037452 Hapln1 protein_coding protein_coding MGP_C3HHeJ_T0009847.1 MGP_C3HHeJ_G0007980.1 mouse_genomes_project 13 49203461 49203570 - Gm24017 miRNA miRNA MGP_C3HHeJ_T0098885.1 MGP_C3HHeJ_G0037079.1 mouse_genomes_project 13 25422103 25422203 + Gm22476 snRNA snRNA MGP_C3HHeJ_T0009839.1 MGP_C3HHeJ_G0007972.1 mouse_genomes_project 13 29391086 29391184 - Gm27516 miRNA miRNA MGP_C3HHeJ_T0006555.1 MGP_C3HHeJ_G0005422.1 mouse_genomes_project 13 112403587 112411451 - Gm6270 lincRNA lincRNA MGP_C3HHeJ_T0037156.1 MGP_C3HHeJ_G0020435.1 mouse_genomes_project 13 64437730 64460459 - MGP_C3HHeJ_P0037156 Nlrp4f protein_coding protein_coding MGP_C3HHeJ_T0035962.1 MGP_C3HHeJ_G0019964.1 mouse_genomes_project 13 5753313 5764485 + MGP_C3HHeJ_P0035962 protein_coding protein_coding MGP_C3HHeJ_T0035963.1 MGP_C3HHeJ_G0019964.1 mouse_genomes_project 13 5761878 5764355 + MGP_C3HHeJ_P0035963 protein_coding protein_coding MGP_C3HHeJ_T0012788.1 MGP_C3HHeJ_G0010892.1 mouse_genomes_project 13 31834962 31836328 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100132.1 MGP_C3HHeJ_G0038326.1 mouse_genomes_project 13 5761013 5761132 - snoRNA snoRNA MGP_C3HHeJ_T0036683.1 MGP_C3HHeJ_G0020289.1 mouse_genomes_project 13 48007907 48024337 + MGP_C3HHeJ_P0036683 Ogn protein_coding protein_coding MGP_C3HHeJ_T0000863.1 MGP_C3HHeJ_G0000803.1 mouse_genomes_project 13 94983144 94983792 + TEC TEC MGP_C3HHeJ_T0101725.1 MGP_C3HHeJ_G0039690.1 mouse_genomes_project 13 31599296 31601843 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037081.1 MGP_C3HHeJ_G0020405.1 mouse_genomes_project 13 60068291 60073742 - MGP_C3HHeJ_P0037081 Ctsq protein_coding protein_coding MGP_C3HHeJ_T0037082.1 MGP_C3HHeJ_G0020405.1 mouse_genomes_project 13 60068301 60071237 - Ctsq protein_coding retained_intron MGP_C3HHeJ_T0100137.1 MGP_C3HHeJ_G0038331.1 mouse_genomes_project 13 20159498 20159629 - Gm23774 snoRNA snoRNA MGP_C3HHeJ_T0036150.1 MGP_C3HHeJ_G0020047.1 mouse_genomes_project 13 19045287 19046124 - MGP_C3HHeJ_P0036150 Hist1h3i protein_coding protein_coding MGP_C3HHeJ_T0036567.1 MGP_C3HHeJ_G0020247.1 mouse_genomes_project 13 41524639 41542161 + MGP_C3HHeJ_P0036567 Sirt5 protein_coding protein_coding MGP_C3HHeJ_T0037910.1 MGP_C3HHeJ_G0020687.1 mouse_genomes_project 13 114221648 114228803 - MGP_C3HHeJ_P0037910 Gzma protein_coding protein_coding MGP_C3HHeJ_T0036349.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 26919362 27603544 - MGP_C3HHeJ_P0036349 Cdkal1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036350.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27062474 27603571 - MGP_C3HHeJ_P0036350 Cdkal1 protein_coding protein_coding MGP_C3HHeJ_T0036351.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27137941 27209502 - MGP_C3HHeJ_P0036351 Cdkal1 protein_coding protein_coding MGP_C3HHeJ_T0036352.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27178670 27252492 - MGP_C3HHeJ_P0036352 Cdkal1 protein_coding protein_coding MGP_C3HHeJ_T0036353.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27208762 27603540 - Cdkal1 protein_coding retained_intron MGP_C3HHeJ_T0036354.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27249244 27603540 - Cdkal1 protein_coding retained_intron MGP_C3HHeJ_T0036355.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27256865 27603536 - MGP_C3HHeJ_P0036355 Cdkal1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036356.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27451922 27603554 - Cdkal1 protein_coding retained_intron MGP_C3HHeJ_T0036357.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27519687 27603328 - MGP_C3HHeJ_P0036357 Cdkal1 protein_coding protein_coding MGP_C3HHeJ_T0036358.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27549894 27603560 - MGP_C3HHeJ_P0036358 Cdkal1 protein_coding protein_coding MGP_C3HHeJ_T0036359.1 MGP_C3HHeJ_G0020163.1 mouse_genomes_project 13 27584920 27603562 - MGP_C3HHeJ_P0036359 Cdkal1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037798.1 MGP_C3HHeJ_G0020652.1 mouse_genomes_project 13 105782250 105891805 - MGP_C3HHeJ_P0037798 Rgs7bp protein_coding protein_coding MGP_C3HHeJ_T0037708.1 MGP_C3HHeJ_G0020628.1 mouse_genomes_project 13 101267693 101289021 - MGP_C3HHeJ_P0037708 Marveld2 protein_coding protein_coding MGP_C3HHeJ_T0037709.1 MGP_C3HHeJ_G0020628.1 mouse_genomes_project 13 101267693 101288994 - MGP_C3HHeJ_P0037709 Marveld2 protein_coding protein_coding MGP_C3HHeJ_T0037710.1 MGP_C3HHeJ_G0020628.1 mouse_genomes_project 13 101268966 101288961 - MGP_C3HHeJ_P0037710 Marveld2 protein_coding protein_coding MGP_C3HHeJ_T0036790.1 MGP_C3HHeJ_G0020321.1 mouse_genomes_project 13 53363246 53369186 - MGP_C3HHeJ_P0036790 Nop16 protein_coding protein_coding MGP_C3HHeJ_T0036791.1 MGP_C3HHeJ_G0020321.1 mouse_genomes_project 13 53363597 53369154 - MGP_C3HHeJ_P0036791 Nop16 protein_coding protein_coding MGP_C3HHeJ_T0036792.1 MGP_C3HHeJ_G0020321.1 mouse_genomes_project 13 53364300 53369072 - MGP_C3HHeJ_P0036792 Nop16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037083.1 MGP_C3HHeJ_G0020406.1 mouse_genomes_project 13 60206907 60211873 - MGP_C3HHeJ_P0037083 Ctsr protein_coding protein_coding MGP_C3HHeJ_T0036156.1 MGP_C3HHeJ_G0020053.1 mouse_genomes_project 13 19050111 19051864 + MGP_C3HHeJ_P0036156 Hist1h2bp protein_coding protein_coding MGP_C3HHeJ_T0036161.1 MGP_C3HHeJ_G0020053.1 mouse_genomes_project 13 19050158 19050627 + MGP_C3HHeJ_P0036161 Hist1h2bp protein_coding protein_coding MGP_C3HHeJ_T0036622.1 MGP_C3HHeJ_G0020268.1 mouse_genomes_project 13 45327543 45369948 + MGP_C3HHeJ_P0036622 Kdm1b protein_coding protein_coding MGP_C3HHeJ_T0036623.1 MGP_C3HHeJ_G0020268.1 mouse_genomes_project 13 45327614 45337762 + MGP_C3HHeJ_P0036623 Kdm1b protein_coding protein_coding MGP_C3HHeJ_T0036624.1 MGP_C3HHeJ_G0020268.1 mouse_genomes_project 13 45327633 45369956 + MGP_C3HHeJ_P0036624 Kdm1b protein_coding protein_coding MGP_C3HHeJ_T0036625.1 MGP_C3HHeJ_G0020268.1 mouse_genomes_project 13 45349505 45357634 + Kdm1b protein_coding retained_intron MGP_C3HHeJ_T0036626.1 MGP_C3HHeJ_G0020268.1 mouse_genomes_project 13 45351820 45369961 + Kdm1b protein_coding processed_transcript MGP_C3HHeJ_T0006565.1 MGP_C3HHeJ_G0005430.1 mouse_genomes_project 13 119891930 119928601 + 1700003P14Rik lincRNA lincRNA MGP_C3HHeJ_T0006566.1 MGP_C3HHeJ_G0005430.1 mouse_genomes_project 13 119892722 119928523 + 1700003P14Rik lincRNA lincRNA MGP_C3HHeJ_T0006567.1 MGP_C3HHeJ_G0005430.1 mouse_genomes_project 13 119892738 119928526 + 1700003P14Rik lincRNA lincRNA MGP_C3HHeJ_T0012737.1 MGP_C3HHeJ_G0010841.1 mouse_genomes_project 13 71422 72206 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037203.1 MGP_C3HHeJ_G0020461.1 mouse_genomes_project 13 66994649 67029686 - MGP_C3HHeJ_P0037203 Gm26965 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037079.1 MGP_C3HHeJ_G0020403.1 mouse_genomes_project 13 59970132 59973848 - MGP_C3HHeJ_P0037079 Tpbpa protein_coding protein_coding MGP_C3HHeJ_T0037188.1 MGP_C3HHeJ_G0020449.1 mouse_genomes_project 13 66651936 66662405 + MGP_C3HHeJ_P0037188 protein_coding protein_coding MGP_C3HHeJ_T0006551.1 MGP_C3HHeJ_G0005419.1 mouse_genomes_project 13 102127854 102194051 + lincRNA lincRNA MGP_C3HHeJ_T0037956.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120777998 120810003 + MGP_C3HHeJ_P0037956 Paip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037957.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120778012 120809889 + MGP_C3HHeJ_P0037957 Paip1 protein_coding protein_coding MGP_C3HHeJ_T0037958.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120778012 120809788 + MGP_C3HHeJ_P0037958 Paip1 protein_coding protein_coding MGP_C3HHeJ_T0037959.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120778012 120810041 + MGP_C3HHeJ_P0037959 Paip1 protein_coding protein_coding MGP_C3HHeJ_T0037960.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120778037 120802708 + MGP_C3HHeJ_P0037960 Paip1 protein_coding protein_coding MGP_C3HHeJ_T0037961.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120793638 120809726 + MGP_C3HHeJ_P0037961 Paip1 protein_coding protein_coding MGP_C3HHeJ_T0037962.1 MGP_C3HHeJ_G0020709.1 mouse_genomes_project 13 120802195 120803719 + Paip1 protein_coding retained_intron MGP_C3HHeJ_T0101703.1 MGP_C3HHeJ_G0039668.1 mouse_genomes_project 13 20188100 20189061 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012795.1 MGP_C3HHeJ_G0010899.1 mouse_genomes_project 13 59808646 59809012 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037275.1 MGP_C3HHeJ_G0020495.1 mouse_genomes_project 13 73371068 73399416 + MGP_C3HHeJ_P0037275 Tert protein_coding protein_coding MGP_C3HHeJ_T0036511.1 MGP_C3HHeJ_G0020225.1 mouse_genomes_project 13 36918282 36947238 - MGP_C3HHeJ_P0036511 Slc35b3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036512.1 MGP_C3HHeJ_G0020225.1 mouse_genomes_project 13 36918290 36947283 - MGP_C3HHeJ_P0036512 Slc35b3 protein_coding protein_coding MGP_C3HHeJ_T0036513.1 MGP_C3HHeJ_G0020225.1 mouse_genomes_project 13 36918290 36947621 - MGP_C3HHeJ_P0036513 Slc35b3 protein_coding protein_coding MGP_C3HHeJ_T0037360.1 MGP_C3HHeJ_G0020528.1 mouse_genomes_project 13 77565380 78021590 + MGP_C3HHeJ_P0037360 Fam172a protein_coding protein_coding MGP_C3HHeJ_T0037361.1 MGP_C3HHeJ_G0020528.1 mouse_genomes_project 13 77565385 78021583 + MGP_C3HHeJ_P0037361 Fam172a protein_coding protein_coding MGP_C3HHeJ_T0006538.1 MGP_C3HHeJ_G0005410.1 mouse_genomes_project 13 97932456 98000300 + Lncenc1 lincRNA lincRNA MGP_C3HHeJ_T0006539.1 MGP_C3HHeJ_G0005410.1 mouse_genomes_project 13 97984457 98000300 + Lncenc1 lincRNA lincRNA MGP_C3HHeJ_T0006540.1 MGP_C3HHeJ_G0005410.1 mouse_genomes_project 13 97984711 97991460 + Lncenc1 lincRNA lincRNA MGP_C3HHeJ_T0098876.1 MGP_C3HHeJ_G0037070.1 mouse_genomes_project 13 11260913 11261020 + Gm26129 snRNA snRNA MGP_C3HHeJ_T0101693.1 MGP_C3HHeJ_G0039658.1 mouse_genomes_project 13 19780563 19781144 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017124.1 MGP_C3HHeJ_G0015012.1 mouse_genomes_project 13 22347635 22351652 + 9330162012Rik processed_transcript processed_transcript MGP_C3HHeJ_T0003373.1 MGP_C3HHeJ_G0003097.1 mouse_genomes_project 13 27687265 27689244 + Gm11365 antisense antisense MGP_C3HHeJ_T0036099.1 MGP_C3HHeJ_G0020015.1 mouse_genomes_project 13 18535125 18541419 - MGP_C3HHeJ_P0036099 Gpx5 protein_coding protein_coding MGP_C3HHeJ_T0036100.1 MGP_C3HHeJ_G0020015.1 mouse_genomes_project 13 18535125 18541374 - MGP_C3HHeJ_P0036100 Gpx5 protein_coding protein_coding MGP_C3HHeJ_T0036515.1 MGP_C3HHeJ_G0020227.1 mouse_genomes_project 13 38761287 38765127 + MGP_C3HHeJ_P0036515 Gm9979 protein_coding protein_coding MGP_C3HHeJ_T0037362.1 MGP_C3HHeJ_G0020529.1 mouse_genomes_project 13 77885504 77886897 + MGP_C3HHeJ_P0037362 Pou5f2 protein_coding protein_coding MGP_C3HHeJ_T0101715.1 MGP_C3HHeJ_G0039680.1 mouse_genomes_project 13 24824904 24827950 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036923.1 MGP_C3HHeJ_G0020351.1 mouse_genomes_project 13 54362162 54368323 - MGP_C3HHeJ_P0036923 Ddx41 protein_coding protein_coding MGP_C3HHeJ_T0036371.1 MGP_C3HHeJ_G0020169.1 mouse_genomes_project 13 28508850 28526552 + MGP_C3HHeJ_P0036371 Irf4 protein_coding protein_coding MGP_C3HHeJ_T0036372.1 MGP_C3HHeJ_G0020169.1 mouse_genomes_project 13 28508850 28526552 + MGP_C3HHeJ_P0036372 Irf4 protein_coding protein_coding MGP_C3HHeJ_T0037490.1 MGP_C3HHeJ_G0020554.1 mouse_genomes_project 13 92119911 92144500 - MGP_C3HHeJ_P0037490 Ckmt2 protein_coding protein_coding MGP_C3HHeJ_T0009867.1 MGP_C3HHeJ_G0008000.1 mouse_genomes_project 13 82713612 82713671 - Mir3961 miRNA miRNA MGP_C3HHeJ_T0003370.1 MGP_C3HHeJ_G0003095.1 mouse_genomes_project 13 22147421 22152615 + 1700016G14Rik antisense antisense MGP_C3HHeJ_T0012810.1 MGP_C3HHeJ_G0010914.1 mouse_genomes_project 13 73784078 73785420 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037073.1 MGP_C3HHeJ_G0020398.1 mouse_genomes_project 13 59837238 59841833 - MGP_C3HHeJ_P0037073 Ctsll3 protein_coding protein_coding MGP_C3HHeJ_T0036086.1 MGP_C3HHeJ_G0020010.1 mouse_genomes_project 13 17341751 17521573 + Elmo1 protein_coding retained_intron MGP_C3HHeJ_T0036087.1 MGP_C3HHeJ_G0020010.1 mouse_genomes_project 13 17341774 17868080 + MGP_C3HHeJ_P0036087 Elmo1 protein_coding protein_coding MGP_C3HHeJ_T0036088.1 MGP_C3HHeJ_G0020010.1 mouse_genomes_project 13 17365451 17602130 + Elmo1 protein_coding retained_intron MGP_C3HHeJ_T0036089.1 MGP_C3HHeJ_G0020010.1 mouse_genomes_project 13 17437863 17718483 + MGP_C3HHeJ_P0036089 Elmo1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036090.1 MGP_C3HHeJ_G0020010.1 mouse_genomes_project 13 17737496 17854105 + Elmo1 protein_coding retained_intron MGP_C3HHeJ_T0101691.1 MGP_C3HHeJ_G0039656.1 mouse_genomes_project 13 19737954 19738725 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036065.1 MGP_C3HHeJ_G0020002.1 mouse_genomes_project 13 15926803 16092808 + MGP_C3HHeJ_P0036065 Vps41 protein_coding protein_coding MGP_C3HHeJ_T0036205.1 MGP_C3HHeJ_G0020090.1 mouse_genomes_project 13 20449822 20450719 - MGP_C3HHeJ_P0036205 Vmn1r220 protein_coding protein_coding MGP_C3HHeJ_T0037824.1 MGP_C3HHeJ_G0020661.1 mouse_genomes_project 13 108981558 108984339 + MGP_C3HHeJ_P0037824 Smim15 protein_coding protein_coding MGP_C3HHeJ_T0036152.1 MGP_C3HHeJ_G0020049.1 mouse_genomes_project 13 19049403 19049871 - MGP_C3HHeJ_P0036152 Hist1h2ao protein_coding protein_coding MGP_C3HHeJ_T0037341.1 MGP_C3HHeJ_G0020523.1 mouse_genomes_project 13 75947134 75985245 - MGP_C3HHeJ_P0037341 Arsk protein_coding protein_coding MGP_C3HHeJ_T0037342.1 MGP_C3HHeJ_G0020523.1 mouse_genomes_project 13 75959737 75985257 - Arsk protein_coding retained_intron MGP_C3HHeJ_T0037540.1 MGP_C3HHeJ_G0020570.1 mouse_genomes_project 13 93919758 93945287 - MGP_C3HHeJ_P0037540 protein_coding protein_coding MGP_C3HHeJ_T0037541.1 MGP_C3HHeJ_G0020570.1 mouse_genomes_project 13 93921191 93944822 - MGP_C3HHeJ_P0037541 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037542.1 MGP_C3HHeJ_G0020570.1 mouse_genomes_project 13 93927319 93944892 - protein_coding retained_intron MGP_C3HHeJ_T0006488.1 MGP_C3HHeJ_G0005377.1 mouse_genomes_project 13 47345021 47349175 + Fam120aos lincRNA lincRNA MGP_C3HHeJ_T0037693.1 MGP_C3HHeJ_G0020625.1 mouse_genomes_project 13 100766333 100828710 - MGP_C3HHeJ_P0037693 Naip2 protein_coding protein_coding MGP_C3HHeJ_T0037694.1 MGP_C3HHeJ_G0020625.1 mouse_genomes_project 13 100766333 100823783 - MGP_C3HHeJ_P0037694 Naip2 protein_coding protein_coding MGP_C3HHeJ_T0037695.1 MGP_C3HHeJ_G0020625.1 mouse_genomes_project 13 100766501 100828581 - MGP_C3HHeJ_P0037695 Naip2 protein_coding protein_coding MGP_C3HHeJ_T0017125.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26160308 26216611 - processed_transcript processed_transcript MGP_C3HHeJ_T0017126.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26161052 26595960 - processed_transcript processed_transcript MGP_C3HHeJ_T0017127.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26161052 26179420 - processed_transcript processed_transcript MGP_C3HHeJ_T0017128.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26161215 26212303 - processed_transcript processed_transcript MGP_C3HHeJ_T0017129.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26200526 26212462 - processed_transcript processed_transcript MGP_C3HHeJ_T0017130.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26257473 26593796 - processed_transcript processed_transcript MGP_C3HHeJ_T0017131.1 MGP_C3HHeJ_G0015013.1 mouse_genomes_project 13 26369690 26595684 - processed_transcript processed_transcript MGP_C3HHeJ_T0000854.1 MGP_C3HHeJ_G0000794.1 mouse_genomes_project 13 68684382 68685900 + TEC TEC MGP_C3HHeJ_T0003439.1 MGP_C3HHeJ_G0003136.1 mouse_genomes_project 13 119004830 119018395 - 4933413L06Rik antisense antisense MGP_C3HHeJ_T0003440.1 MGP_C3HHeJ_G0003136.1 mouse_genomes_project 13 119005093 119018371 - 4933413L06Rik antisense antisense MGP_C3HHeJ_T0037901.1 MGP_C3HHeJ_G0020682.1 mouse_genomes_project 13 114110737 114113720 + MGP_C3HHeJ_P0037901 Ccno protein_coding protein_coding MGP_C3HHeJ_T0035938.1 MGP_C3HHeJ_G0019959.1 mouse_genomes_project 13 4793744 4807641 - MGP_C3HHeJ_P0035938 protein_coding protein_coding MGP_C3HHeJ_T0037068.1 MGP_C3HHeJ_G0020394.1 mouse_genomes_project 13 59191031 59193993 - MGP_C3HHeJ_P0037068 Gas1 protein_coding protein_coding MGP_C3HHeJ_T0006486.1 MGP_C3HHeJ_G0005375.1 mouse_genomes_project 13 46618714 46620177 - A330048O09Rik lincRNA lincRNA MGP_C3HHeJ_T0037148.1 MGP_C3HHeJ_G0020430.1 mouse_genomes_project 13 64276910 64281919 + MGP_C3HHeJ_P0037148 Spata31d1c protein_coding protein_coding MGP_C3HHeJ_T0037724.1 MGP_C3HHeJ_G0020634.1 mouse_genomes_project 13 101441830 101457671 - MGP_C3HHeJ_P0037724 Cenph protein_coding protein_coding MGP_C3HHeJ_T0037725.1 MGP_C3HHeJ_G0020634.1 mouse_genomes_project 13 101453960 101457555 - Cenph protein_coding retained_intron MGP_C3HHeJ_T0101722.1 MGP_C3HHeJ_G0039687.1 mouse_genomes_project 13 31470074 31470233 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006515.1 MGP_C3HHeJ_G0005394.1 mouse_genomes_project 13 69664639 69687309 - 1700084F23Rik lincRNA lincRNA MGP_C3HHeJ_T0006516.1 MGP_C3HHeJ_G0005394.1 mouse_genomes_project 13 69673499 69686793 - 1700084F23Rik lincRNA lincRNA MGP_C3HHeJ_T0100172.1 MGP_C3HHeJ_G0038366.1 mouse_genomes_project 13 119357950 119358080 + Gm26349 snoRNA snoRNA MGP_C3HHeJ_T0036568.1 MGP_C3HHeJ_G0020248.1 mouse_genomes_project 13 41545312 41549719 + MGP_C3HHeJ_P0036568 Nol7 protein_coding protein_coding MGP_C3HHeJ_T0036155.1 MGP_C3HHeJ_G0020052.1 mouse_genomes_project 13 19050029 19050611 + MGP_C3HHeJ_P0036155 Hist1h2bj protein_coding protein_coding MGP_C3HHeJ_T0037453.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89874131 89962426 - MGP_C3HHeJ_P0037453 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037454.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89875158 89962239 - MGP_C3HHeJ_P0037454 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037455.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89875463 89962251 - MGP_C3HHeJ_P0037455 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037456.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89875835 89897423 - MGP_C3HHeJ_P0037456 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037457.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89875874 89962161 - MGP_C3HHeJ_P0037457 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037458.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89876473 89898210 - MGP_C3HHeJ_P0037458 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037459.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89929973 89941896 - Vcan protein_coding retained_intron MGP_C3HHeJ_T0037460.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89930516 89962235 - MGP_C3HHeJ_P0037460 Vcan protein_coding protein_coding MGP_C3HHeJ_T0037461.1 MGP_C3HHeJ_G0020544.1 mouse_genomes_project 13 89945357 89960313 - MGP_C3HHeJ_P0037461 Vcan protein_coding protein_coding MGP_C3HHeJ_T0036219.1 MGP_C3HHeJ_G0020098.1 mouse_genomes_project 13 20905620 20907453 - MGP_C3HHeJ_P0036219 protein_coding protein_coding MGP_C3HHeJ_T0100143.1 MGP_C3HHeJ_G0038337.1 mouse_genomes_project 13 34524727 34524859 + Gm26395 snoRNA snoRNA MGP_C3HHeJ_T0017135.1 MGP_C3HHeJ_G0015016.1 mouse_genomes_project 13 39033929 39080428 - A730081D07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0003379.1 MGP_C3HHeJ_G0003102.1 mouse_genomes_project 13 39939482 39947371 + Gm28564 antisense antisense MGP_C3HHeJ_T0035972.1 MGP_C3HHeJ_G0019967.1 mouse_genomes_project 13 6097229 6511917 + MGP_C3HHeJ_P0035972 Dip2c protein_coding protein_coding MGP_C3HHeJ_T0035973.1 MGP_C3HHeJ_G0019967.1 mouse_genomes_project 13 6097634 6509167 + MGP_C3HHeJ_P0035973 Dip2c protein_coding protein_coding MGP_C3HHeJ_T0035974.1 MGP_C3HHeJ_G0019967.1 mouse_genomes_project 13 6097683 6509167 + MGP_C3HHeJ_P0035974 Dip2c protein_coding protein_coding MGP_C3HHeJ_T0036376.1 MGP_C3HHeJ_G0020172.1 mouse_genomes_project 13 28742058 28743831 + MGP_C3HHeJ_P0036376 Gm5447 protein_coding protein_coding MGP_C3HHeJ_T0006478.1 MGP_C3HHeJ_G0005370.1 mouse_genomes_project 13 42570769 42627241 - Gm27007 lincRNA lincRNA MGP_C3HHeJ_T0037250.1 MGP_C3HHeJ_G0020484.1 mouse_genomes_project 13 70273726 70326687 - MGP_C3HHeJ_P0037250 Ice1 protein_coding protein_coding MGP_C3HHeJ_T0012778.1 MGP_C3HHeJ_G0010882.1 mouse_genomes_project 13 26854124 26854633 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036180.1 MGP_C3HHeJ_G0020065.1 mouse_genomes_project 13 19477188 19478091 - MGP_C3HHeJ_P0036180 Vmn1r192 protein_coding protein_coding MGP_C3HHeJ_T0037825.1 MGP_C3HHeJ_G0020662.1 mouse_genomes_project 13 108987782 109100766 - MGP_C3HHeJ_P0037825 Ndufaf2 protein_coding protein_coding MGP_C3HHeJ_T0006537.1 MGP_C3HHeJ_G0005409.1 mouse_genomes_project 13 97771840 97774572 + C430039J16Rik lincRNA lincRNA MGP_C3HHeJ_T0036678.1 MGP_C3HHeJ_G0020285.1 mouse_genomes_project 13 47864576 48059642 - MGP_C3HHeJ_P0036678 Cenpp protein_coding protein_coding MGP_C3HHeJ_T0036922.1 MGP_C3HHeJ_G0020350.1 mouse_genomes_project 13 54354927 54360291 - MGP_C3HHeJ_P0036922 Dok3 protein_coding protein_coding MGP_C3HHeJ_T0037585.1 MGP_C3HHeJ_G0020584.1 mouse_genomes_project 13 95808173 95823408 - MGP_C3HHeJ_P0037585 Crhbp protein_coding protein_coding MGP_C3HHeJ_T0002548.1 MGP_C3HHeJ_G0002458.1 mouse_genomes_project 13 16400407 16400981 + MGP_C3HHeJ_P0002548 Tcrg-V6 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002549.1 MGP_C3HHeJ_G0002458.1 mouse_genomes_project 13 16400419 16400981 + MGP_C3HHeJ_P0002549 Tcrg-V6 TR_V_gene TR_V_gene MGP_C3HHeJ_T0006444.1 MGP_C3HHeJ_G0005347.1 mouse_genomes_project 13 26735435 26736698 + A330102I10Rik lincRNA lincRNA MGP_C3HHeJ_T0006445.1 MGP_C3HHeJ_G0005347.1 mouse_genomes_project 13 26735508 26749735 + A330102I10Rik lincRNA lincRNA MGP_C3HHeJ_T0006446.1 MGP_C3HHeJ_G0005347.1 mouse_genomes_project 13 26737325 26749803 + A330102I10Rik lincRNA lincRNA MGP_C3HHeJ_T0006447.1 MGP_C3HHeJ_G0005347.1 mouse_genomes_project 13 26737740 26761965 + A330102I10Rik lincRNA lincRNA MGP_C3HHeJ_T0012757.1 MGP_C3HHeJ_G0010861.1 mouse_genomes_project 13 20045552 20045979 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098897.1 MGP_C3HHeJ_G0037091.1 mouse_genomes_project 13 45183868 45183972 + Gm22960 snRNA snRNA MGP_C3HHeJ_T0037287.1 MGP_C3HHeJ_G0020498.1 mouse_genomes_project 13 73519093 73573295 + MGP_C3HHeJ_P0037287 Slc12a7 protein_coding protein_coding MGP_C3HHeJ_T0037288.1 MGP_C3HHeJ_G0020498.1 mouse_genomes_project 13 73519163 73571486 + MGP_C3HHeJ_P0037288 Slc12a7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101729.1 MGP_C3HHeJ_G0039694.1 mouse_genomes_project 13 107079322 107079878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036713.1 MGP_C3HHeJ_G0020299.1 mouse_genomes_project 13 50045148 50059561 + MGP_C3HHeJ_P0036713 S1pr3 protein_coding protein_coding MGP_C3HHeJ_T0012828.1 MGP_C3HHeJ_G0010932.1 mouse_genomes_project 13 101721688 101722656 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036044.1 MGP_C3HHeJ_G0019992.1 mouse_genomes_project 13 11791117 11793845 - MGP_C3HHeJ_P0036044 Mrpl32 protein_coding protein_coding MGP_C3HHeJ_T0037764.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104620392 104724083 - MGP_C3HHeJ_P0037764 Erbin protein_coding protein_coding MGP_C3HHeJ_T0037765.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104620396 104694056 - MGP_C3HHeJ_P0037765 Erbin protein_coding protein_coding MGP_C3HHeJ_T0037766.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104620396 104723864 - MGP_C3HHeJ_P0037766 Erbin protein_coding protein_coding MGP_C3HHeJ_T0037767.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104621212 104723864 - MGP_C3HHeJ_P0037767 Erbin protein_coding protein_coding MGP_C3HHeJ_T0037768.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104621212 104723864 - MGP_C3HHeJ_P0037768 Erbin protein_coding protein_coding MGP_C3HHeJ_T0037769.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104621212 104723864 - MGP_C3HHeJ_P0037769 Erbin protein_coding protein_coding MGP_C3HHeJ_T0037770.1 MGP_C3HHeJ_G0020641.1 mouse_genomes_project 13 104644937 104724083 - Erbin protein_coding retained_intron MGP_C3HHeJ_T0036143.1 MGP_C3HHeJ_G0020040.1 mouse_genomes_project 13 18981047 18983140 + MGP_C3HHeJ_P0036143 Hist1h3h protein_coding protein_coding MGP_C3HHeJ_T0037075.1 MGP_C3HHeJ_G0020400.1 mouse_genomes_project 13 59926893 59930347 - MGP_C3HHeJ_P0037075 Ctla2b protein_coding protein_coding MGP_C3HHeJ_T0037076.1 MGP_C3HHeJ_G0020400.1 mouse_genomes_project 13 59926893 59930347 - MGP_C3HHeJ_P0037076 Ctla2b protein_coding protein_coding MGP_C3HHeJ_T0036453.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32825999 32846032 - MGP_C3HHeJ_P0036453 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036454.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32826000 32846015 - MGP_C3HHeJ_P0036454 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036455.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32826001 32846032 - MGP_C3HHeJ_P0036455 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036456.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32826008 32846020 - MGP_C3HHeJ_P0036456 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036457.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32826953 32838458 - Eci2 protein_coding processed_transcript MGP_C3HHeJ_T0036458.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32828507 32839201 - Eci2 protein_coding processed_transcript MGP_C3HHeJ_T0036459.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32835531 32837992 - Eci2 protein_coding retained_intron MGP_C3HHeJ_T0036460.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32835599 32873686 - MGP_C3HHeJ_P0036460 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036461.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32835600 32873686 - MGP_C3HHeJ_P0036461 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036462.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32835600 32846020 - MGP_C3HHeJ_P0036462 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036463.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32835601 32846011 - MGP_C3HHeJ_P0036463 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036464.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32837048 32846010 - MGP_C3HHeJ_P0036464 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036465.1 MGP_C3HHeJ_G0020206.1 mouse_genomes_project 13 32842151 32845350 - MGP_C3HHeJ_P0036465 Eci2 protein_coding protein_coding MGP_C3HHeJ_T0036760.1 MGP_C3HHeJ_G0020310.1 mouse_genomes_project 13 52055645 52101388 - MGP_C3HHeJ_P0036760 Sptlc1 protein_coding protein_coding MGP_C3HHeJ_T0006519.1 MGP_C3HHeJ_G0005397.1 mouse_genomes_project 13 79865906 80049309 - lincRNA lincRNA MGP_C3HHeJ_T0036506.1 MGP_C3HHeJ_G0020222.1 mouse_genomes_project 13 36452674 36481461 - MGP_C3HHeJ_P0036506 Txndc5 protein_coding protein_coding MGP_C3HHeJ_T0036507.1 MGP_C3HHeJ_G0020222.1 mouse_genomes_project 13 36452681 36480942 - MGP_C3HHeJ_P0036507 Txndc5 protein_coding protein_coding MGP_C3HHeJ_T0036508.1 MGP_C3HHeJ_G0020222.1 mouse_genomes_project 13 36452685 36458353 - Txndc5 protein_coding retained_intron MGP_C3HHeJ_T0017121.1 MGP_C3HHeJ_G0015009.1 mouse_genomes_project 13 20647474 20730249 + 4930586N03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0036743.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51535148 51634543 - MGP_C3HHeJ_P0036743 Auh protein_coding protein_coding MGP_C3HHeJ_T0036744.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51535148 51624146 - MGP_C3HHeJ_P0036744 Auh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036745.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51540898 51634340 - MGP_C3HHeJ_P0036745 Auh protein_coding protein_coding MGP_C3HHeJ_T0036746.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51586675 51634530 - Auh protein_coding retained_intron MGP_C3HHeJ_T0036747.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51598599 51634534 - MGP_C3HHeJ_P0036747 Auh protein_coding protein_coding MGP_C3HHeJ_T0036748.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51599375 51628781 - Auh protein_coding processed_transcript MGP_C3HHeJ_T0036749.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51609705 51634536 - MGP_C3HHeJ_P0036749 Auh protein_coding protein_coding MGP_C3HHeJ_T0036750.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51611555 51628760 - Auh protein_coding processed_transcript MGP_C3HHeJ_T0036751.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51611566 51624182 - Auh protein_coding processed_transcript MGP_C3HHeJ_T0036752.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51612870 51634563 - MGP_C3HHeJ_P0036752 Auh protein_coding protein_coding MGP_C3HHeJ_T0036753.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51616560 51628784 - Auh protein_coding processed_transcript MGP_C3HHeJ_T0036754.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51623689 51628776 - Auh protein_coding retained_intron MGP_C3HHeJ_T0036755.1 MGP_C3HHeJ_G0020307.1 mouse_genomes_project 13 51633369 51634534 - Auh protein_coding processed_transcript MGP_C3HHeJ_T0037090.1 MGP_C3HHeJ_G0020413.1 mouse_genomes_project 13 62066282 62087897 - MGP_C3HHeJ_P0037090 Fbp2 protein_coding protein_coding MGP_C3HHeJ_T0098029.1 MGP_C3HHeJ_G0036241.1 mouse_genomes_project 13 51673340 51673452 - n-R5s54 rRNA rRNA MGP_C3HHeJ_T0037496.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465370 92615363 - MGP_C3HHeJ_P0037496 Msh3 protein_coding protein_coding MGP_C3HHeJ_T0037497.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465378 92496784 - Msh3 protein_coding processed_transcript MGP_C3HHeJ_T0037498.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465379 92530770 - Msh3 protein_coding retained_intron MGP_C3HHeJ_T0037499.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465380 92615367 - MGP_C3HHeJ_P0037499 Msh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037500.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465384 92506424 - Msh3 protein_coding retained_intron MGP_C3HHeJ_T0037501.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465384 92615371 - MGP_C3HHeJ_P0037501 Msh3 protein_coding protein_coding MGP_C3HHeJ_T0037502.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92465755 92491255 - MGP_C3HHeJ_P0037502 Msh3 protein_coding protein_coding MGP_C3HHeJ_T0037503.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92506204 92615353 - MGP_C3HHeJ_P0037503 Msh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037505.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92564383 92566344 - Msh3 protein_coding retained_intron MGP_C3HHeJ_T0037506.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92566066 92615364 - MGP_C3HHeJ_P0037506 Msh3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037507.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92569538 92605577 - Msh3 protein_coding retained_intron MGP_C3HHeJ_T0037508.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92600870 92614883 - Msh3 protein_coding processed_transcript MGP_C3HHeJ_T0037509.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92606067 92615321 - Msh3 protein_coding retained_intron MGP_C3HHeJ_T0037510.1 MGP_C3HHeJ_G0020556.1 mouse_genomes_project 13 92611473 92615353 - MGP_C3HHeJ_P0037510 Msh3 protein_coding protein_coding MGP_C3HHeJ_T0006546.1 MGP_C3HHeJ_G0005414.1 mouse_genomes_project 13 99690792 99701890 - 2310020H05Rik lincRNA lincRNA MGP_C3HHeJ_T0006432.1 MGP_C3HHeJ_G0005337.1 mouse_genomes_project 13 20603831 20647350 - 4930557F10Rik lincRNA lincRNA MGP_C3HHeJ_T0012831.1 MGP_C3HHeJ_G0010935.1 mouse_genomes_project 13 112402950 112403423 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036190.1 MGP_C3HHeJ_G0020075.1 mouse_genomes_project 13 19790067 19790976 - MGP_C3HHeJ_P0036190 Vmn1r202 protein_coding protein_coding MGP_C3HHeJ_T0100140.1 MGP_C3HHeJ_G0038334.1 mouse_genomes_project 13 29123752 29123867 + Gm22330 snoRNA snoRNA MGP_C3HHeJ_T0100163.1 MGP_C3HHeJ_G0038357.1 mouse_genomes_project 13 82050212 82050343 + Gm24295 snoRNA snoRNA MGP_C3HHeJ_T0009861.1 MGP_C3HHeJ_G0007994.1 mouse_genomes_project 13 62533320 62533393 + Mir27b miRNA miRNA MGP_C3HHeJ_T0009879.1 MGP_C3HHeJ_G0008012.1 mouse_genomes_project 13 114157063 114157172 + Mir449c miRNA miRNA MGP_C3HHeJ_T0006503.1 MGP_C3HHeJ_G0005385.1 mouse_genomes_project 13 54686103 54686839 - Gm28760 lincRNA lincRNA MGP_C3HHeJ_T0006504.1 MGP_C3HHeJ_G0005385.1 mouse_genomes_project 13 54686103 54686836 - Gm28760 lincRNA lincRNA MGP_C3HHeJ_T0036850.1 MGP_C3HHeJ_G0020331.1 mouse_genomes_project 13 53742818 53801562 + MGP_C3HHeJ_P0036850 Unc5a protein_coding protein_coding MGP_C3HHeJ_T0036851.1 MGP_C3HHeJ_G0020331.1 mouse_genomes_project 13 53742818 53801562 + MGP_C3HHeJ_P0036851 Unc5a protein_coding protein_coding MGP_C3HHeJ_T0036852.1 MGP_C3HHeJ_G0020331.1 mouse_genomes_project 13 53792106 53795346 + MGP_C3HHeJ_P0036852 Unc5a protein_coding protein_coding MGP_C3HHeJ_T0036853.1 MGP_C3HHeJ_G0020331.1 mouse_genomes_project 13 53798553 53800197 + Unc5a protein_coding retained_intron MGP_C3HHeJ_T0036854.1 MGP_C3HHeJ_G0020331.1 mouse_genomes_project 13 53799223 53801030 + MGP_C3HHeJ_P0036854 Unc5a protein_coding protein_coding MGP_C3HHeJ_T0002550.1 MGP_C3HHeJ_G0002459.1 mouse_genomes_project 13 16402329 16402777 + MGP_C3HHeJ_P0002550 Tcrg-V5 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002551.1 MGP_C3HHeJ_G0002459.1 mouse_genomes_project 13 16402484 16402777 + MGP_C3HHeJ_P0002551 Tcrg-V5 TR_V_gene TR_V_gene MGP_C3HHeJ_T0036679.1 MGP_C3HHeJ_G0020286.1 mouse_genomes_project 13 47905350 47932111 + MGP_C3HHeJ_P0036679 Ecm2 protein_coding protein_coding MGP_C3HHeJ_T0036214.1 MGP_C3HHeJ_G0020095.1 mouse_genomes_project 13 20837038 20848296 - MGP_C3HHeJ_P0036214 Btn2a2 protein_coding protein_coding MGP_C3HHeJ_T0036215.1 MGP_C3HHeJ_G0020095.1 mouse_genomes_project 13 20837038 20848313 - MGP_C3HHeJ_P0036215 Btn2a2 protein_coding protein_coding MGP_C3HHeJ_T0036216.1 MGP_C3HHeJ_G0020095.1 mouse_genomes_project 13 20837250 20848303 - MGP_C3HHeJ_P0036216 Btn2a2 protein_coding protein_coding MGP_C3HHeJ_T0017145.1 MGP_C3HHeJ_G0015023.1 mouse_genomes_project 13 112868829 112869449 + processed_transcript processed_transcript MGP_C3HHeJ_T0012738.1 MGP_C3HHeJ_G0010842.1 mouse_genomes_project 13 922660 922951 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036446.1 MGP_C3HHeJ_G0020201.1 mouse_genomes_project 13 32577217 32589960 + MGP_C3HHeJ_P0036446 Fam50b protein_coding protein_coding MGP_C3HHeJ_T0011248.1 MGP_C3HHeJ_G0009381.1 mouse_genomes_project 13 5920415 5920710 + Gm23553 misc_RNA misc_RNA MGP_C3HHeJ_T0003381.1 MGP_C3HHeJ_G0003104.1 mouse_genomes_project 13 41265929 41273898 - Gm15813 antisense antisense MGP_C3HHeJ_T0036151.1 MGP_C3HHeJ_G0020048.1 mouse_genomes_project 13 19049385 19049898 - MGP_C3HHeJ_P0036151 Hist1h2ap protein_coding protein_coding MGP_C3HHeJ_T0101727.1 MGP_C3HHeJ_G0039692.1 mouse_genomes_project 13 41010959 41011848 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003405.1 MGP_C3HHeJ_G0003118.1 mouse_genomes_project 13 73451933 73461929 + Slc6a19os antisense antisense MGP_C3HHeJ_T0003406.1 MGP_C3HHeJ_G0003118.1 mouse_genomes_project 13 73455823 73460990 + Slc6a19os antisense antisense MGP_C3HHeJ_T0000868.1 MGP_C3HHeJ_G0000808.1 mouse_genomes_project 13 102490378 102492547 - TEC TEC MGP_C3HHeJ_T0006442.1 MGP_C3HHeJ_G0005345.1 mouse_genomes_project 13 24788074 24799751 + 4930511O05Rik lincRNA lincRNA MGP_C3HHeJ_T0009870.1 MGP_C3HHeJ_G0008003.1 mouse_genomes_project 13 90975449 90975559 + Gm44338 miRNA miRNA MGP_C3HHeJ_T0036502.1 MGP_C3HHeJ_G0020220.1 mouse_genomes_project 13 36137058 36159780 + MGP_C3HHeJ_P0036502 Snrnp48 protein_coding protein_coding MGP_C3HHeJ_T0036503.1 MGP_C3HHeJ_G0020220.1 mouse_genomes_project 13 36137070 36159039 + MGP_C3HHeJ_P0036503 Snrnp48 protein_coding protein_coding MGP_C3HHeJ_T0036504.1 MGP_C3HHeJ_G0020220.1 mouse_genomes_project 13 36137092 36146762 + MGP_C3HHeJ_P0036504 Snrnp48 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036548.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 40818190 41286703 + MGP_C3HHeJ_P0036548 Phactr1 protein_coding protein_coding MGP_C3HHeJ_T0036549.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 40818366 41103479 + Phactr1 protein_coding retained_intron MGP_C3HHeJ_T0036550.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 40819080 41283419 + MGP_C3HHeJ_P0036550 Phactr1 protein_coding protein_coding MGP_C3HHeJ_T0036551.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 40820265 41283363 + MGP_C3HHeJ_P0036551 Phactr1 protein_coding protein_coding MGP_C3HHeJ_T0036552.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 40848905 41283575 + MGP_C3HHeJ_P0036552 Phactr1 protein_coding protein_coding MGP_C3HHeJ_T0036553.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 40848943 41286705 + MGP_C3HHeJ_P0036553 Phactr1 protein_coding protein_coding MGP_C3HHeJ_T0036554.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41008807 41283478 + MGP_C3HHeJ_P0036554 Phactr1 protein_coding protein_coding MGP_C3HHeJ_T0036555.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41009454 41101241 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036556.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41260437 41283557 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036557.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41271071 41283585 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036558.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41271086 41283533 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036559.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41274068 41283423 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036560.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41274068 41283423 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036561.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41274100 41283423 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036562.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41281165 41282409 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036563.1 MGP_C3HHeJ_G0020244.1 mouse_genomes_project 13 41283557 41286691 + Phactr1 protein_coding processed_transcript MGP_C3HHeJ_T0036547.1 MGP_C3HHeJ_G0020243.1 mouse_genomes_project 13 40420667 40428648 + MGP_C3HHeJ_P0036547 Edn1 protein_coding protein_coding MGP_C3HHeJ_T0100158.1 MGP_C3HHeJ_G0038352.1 mouse_genomes_project 13 75786237 75786367 + Gm24163 snoRNA snoRNA MGP_C3HHeJ_T0012749.1 MGP_C3HHeJ_G0010853.1 mouse_genomes_project 13 19166549 19167546 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037935.1 MGP_C3HHeJ_G0020699.1 mouse_genomes_project 13 116293987 116296377 - MGP_C3HHeJ_P0037935 Pelo protein_coding protein_coding MGP_C3HHeJ_T0098028.1 MGP_C3HHeJ_G0036240.1 mouse_genomes_project 13 44789532 44789610 + Gm24915 rRNA rRNA MGP_C3HHeJ_T0098882.1 MGP_C3HHeJ_G0037076.1 mouse_genomes_project 13 18738480 18738544 - Gm23779 snRNA snRNA MGP_C3HHeJ_T0012770.1 MGP_C3HHeJ_G0010874.1 mouse_genomes_project 13 23096573 23097433 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006499.1 MGP_C3HHeJ_G0005381.1 mouse_genomes_project 13 53168499 53168742 - Gm16248 lincRNA lincRNA MGP_C3HHeJ_T0036393.1 MGP_C3HHeJ_G0020182.1 mouse_genomes_project 13 30695007 30706353 - MGP_C3HHeJ_P0036393 Serpinb1c protein_coding protein_coding MGP_C3HHeJ_T0036394.1 MGP_C3HHeJ_G0020182.1 mouse_genomes_project 13 30697181 30706330 - MGP_C3HHeJ_P0036394 Serpinb1c protein_coding protein_coding MGP_C3HHeJ_T0036451.1 MGP_C3HHeJ_G0020205.1 mouse_genomes_project 13 32791243 32810830 - MGP_C3HHeJ_P0036451 Eci3 protein_coding protein_coding MGP_C3HHeJ_T0036452.1 MGP_C3HHeJ_G0020205.1 mouse_genomes_project 13 32792551 32810808 - MGP_C3HHeJ_P0036452 Eci3 protein_coding protein_coding MGP_C3HHeJ_T0037968.1 MGP_C3HHeJ_G0020714.1 mouse_genomes_project 13 121076809 121094262 + MGP_C3HHeJ_P0037968 Hmgcs1 protein_coding protein_coding MGP_C3HHeJ_T0036147.1 MGP_C3HHeJ_G0020044.1 mouse_genomes_project 13 19020064 19020521 - MGP_C3HHeJ_P0036147 Hist1h2ae protein_coding protein_coding MGP_C3HHeJ_T0037670.1 MGP_C3HHeJ_G0020620.1 mouse_genomes_project 13 100512117 100514332 - MGP_C3HHeJ_P0037670 Cartpt protein_coding protein_coding MGP_C3HHeJ_T0036032.1 MGP_C3HHeJ_G0019989.1 mouse_genomes_project 13 11224790 11235743 - MGP_C3HHeJ_P0036032 Ggps1 protein_coding protein_coding MGP_C3HHeJ_T0036302.1 MGP_C3HHeJ_G0020135.1 mouse_genomes_project 13 22317989 22347896 - MGP_C3HHeJ_P0036302 Aldh5a1 protein_coding protein_coding MGP_C3HHeJ_T0035922.1 MGP_C3HHeJ_G0019956.1 mouse_genomes_project 13 3174470 3177061 + MGP_C3HHeJ_P0035922 Gm28465 protein_coding protein_coding MGP_C3HHeJ_T0000872.1 MGP_C3HHeJ_G0000812.1 mouse_genomes_project 13 115383190 115394576 + TEC TEC MGP_C3HHeJ_T0037947.1 MGP_C3HHeJ_G0020707.1 mouse_genomes_project 13 120014406 120139843 + Fgf10 protein_coding processed_transcript MGP_C3HHeJ_T0037948.1 MGP_C3HHeJ_G0020707.1 mouse_genomes_project 13 120014439 120132086 + Fgf10 protein_coding processed_transcript MGP_C3HHeJ_T0037949.1 MGP_C3HHeJ_G0020707.1 mouse_genomes_project 13 120059465 120142584 + MGP_C3HHeJ_P0037949 Fgf10 protein_coding protein_coding MGP_C3HHeJ_T0036514.1 MGP_C3HHeJ_G0020226.1 mouse_genomes_project 13 38027788 38321910 - MGP_C3HHeJ_P0036514 Ofcc1 protein_coding protein_coding MGP_C3HHeJ_T0000847.1 MGP_C3HHeJ_G0000787.1 mouse_genomes_project 13 37249129 37249492 + TEC TEC MGP_C3HHeJ_T0037902.1 MGP_C3HHeJ_G0020683.1 mouse_genomes_project 13 114117544 114124080 + MGP_C3HHeJ_P0037902 Mcidas protein_coding protein_coding MGP_C3HHeJ_T0036398.1 MGP_C3HHeJ_G0020184.1 mouse_genomes_project 13 30809104 30823803 + MGP_C3HHeJ_P0036398 Serpinb9 protein_coding protein_coding MGP_C3HHeJ_T0036399.1 MGP_C3HHeJ_G0020184.1 mouse_genomes_project 13 30810386 30823801 + MGP_C3HHeJ_P0036399 Serpinb9 protein_coding protein_coding MGP_C3HHeJ_T0036498.1 MGP_C3HHeJ_G0020218.1 mouse_genomes_project 13 35966116 35991488 + MGP_C3HHeJ_P0036498 Riok1 protein_coding protein_coding MGP_C3HHeJ_T0006437.1 MGP_C3HHeJ_G0005341.1 mouse_genomes_project 13 21755665 21764840 - Gm11345 lincRNA lincRNA MGP_C3HHeJ_T0017120.1 MGP_C3HHeJ_G0015008.1 mouse_genomes_project 13 19324372 19330102 + Gm11292 processed_transcript processed_transcript MGP_C3HHeJ_T0037326.1 MGP_C3HHeJ_G0020513.1 mouse_genomes_project 13 74143443 74165294 - MGP_C3HHeJ_P0037326 Zfp72 protein_coding protein_coding MGP_C3HHeJ_T0098896.1 MGP_C3HHeJ_G0037090.1 mouse_genomes_project 13 43686039 43686146 - Gm23387 snRNA snRNA MGP_C3HHeJ_T0037146.1 MGP_C3HHeJ_G0020428.1 mouse_genomes_project 13 64016312 64173325 - MGP_C3HHeJ_P0037146 Cntnap3 protein_coding protein_coding MGP_C3HHeJ_T0098886.1 MGP_C3HHeJ_G0037080.1 mouse_genomes_project 13 27903134 27903318 - Gm23206 snRNA snRNA MGP_C3HHeJ_T0017138.1 MGP_C3HHeJ_G0015018.1 mouse_genomes_project 13 69275411 69279815 - Gm17108 processed_transcript processed_transcript MGP_C3HHeJ_T0036566.1 MGP_C3HHeJ_G0020246.1 mouse_genomes_project 13 41352376 41456116 - MGP_C3HHeJ_P0036566 Gfod1 protein_coding protein_coding MGP_C3HHeJ_T0003436.1 MGP_C3HHeJ_G0003133.1 mouse_genomes_project 13 107658018 107667854 + Gm28989 antisense antisense MGP_C3HHeJ_T0012751.1 MGP_C3HHeJ_G0010855.1 mouse_genomes_project 13 19249414 19249990 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006502.1 MGP_C3HHeJ_G0005384.1 mouse_genomes_project 13 53719860 53723342 - 4930526F13Rik lincRNA lincRNA MGP_C3HHeJ_T0036232.1 MGP_C3HHeJ_G0020109.1 mouse_genomes_project 13 21065215 21065941 + MGP_C3HHeJ_P0036232 Hist1h1t protein_coding protein_coding MGP_C3HHeJ_T0012777.1 MGP_C3HHeJ_G0010881.1 mouse_genomes_project 13 26546695 26547496 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037644.1 MGP_C3HHeJ_G0020607.1 mouse_genomes_project 13 98848646 98876892 + MGP_C3HHeJ_P0037644 Gm21976 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037645.1 MGP_C3HHeJ_G0020607.1 mouse_genomes_project 13 98848651 98863582 + MGP_C3HHeJ_P0037645 Gm21976 protein_coding protein_coding MGP_C3HHeJ_T0037646.1 MGP_C3HHeJ_G0020607.1 mouse_genomes_project 13 98848697 98876892 + MGP_C3HHeJ_P0037646 Gm21976 protein_coding protein_coding MGP_C3HHeJ_T0037647.1 MGP_C3HHeJ_G0020607.1 mouse_genomes_project 13 98872233 98876830 + MGP_C3HHeJ_P0037647 Gm21976 protein_coding protein_coding MGP_C3HHeJ_T0006532.1 MGP_C3HHeJ_G0005404.1 mouse_genomes_project 13 84075304 84119105 - Gm17750 lincRNA lincRNA MGP_C3HHeJ_T0037945.1 MGP_C3HHeJ_G0020705.1 mouse_genomes_project 13 119713008 119720161 - MGP_C3HHeJ_P0037945 Mrps30 protein_coding protein_coding MGP_C3HHeJ_T0006456.1 MGP_C3HHeJ_G0005355.1 mouse_genomes_project 13 29142059 29176990 - Gm11375 lincRNA lincRNA MGP_C3HHeJ_T0006457.1 MGP_C3HHeJ_G0005355.1 mouse_genomes_project 13 29175475 29177032 - Gm11375 lincRNA lincRNA MGP_C3HHeJ_T0037329.1 MGP_C3HHeJ_G0020516.1 mouse_genomes_project 13 74952710 74996377 + MGP_C3HHeJ_P0037329 Pcsk1 protein_coding protein_coding MGP_C3HHeJ_T0037330.1 MGP_C3HHeJ_G0020516.1 mouse_genomes_project 13 74952800 74969490 + Pcsk1 protein_coding retained_intron MGP_C3HHeJ_T0037521.1 MGP_C3HHeJ_G0020563.1 mouse_genomes_project 13 92900714 92997550 + MGP_C3HHeJ_P0037521 Serinc5 protein_coding protein_coding MGP_C3HHeJ_T0036128.1 MGP_C3HHeJ_G0020028.1 mouse_genomes_project 13 18791671 18792658 - MGP_C3HHeJ_P0036128 protein_coding protein_coding MGP_C3HHeJ_T0036472.1 MGP_C3HHeJ_G0020209.1 mouse_genomes_project 13 33814492 33835161 + Ppp1r3g protein_coding processed_transcript MGP_C3HHeJ_T0036473.1 MGP_C3HHeJ_G0020209.1 mouse_genomes_project 13 33834689 33837225 + MGP_C3HHeJ_P0036473 Ppp1r3g protein_coding protein_coding MGP_C3HHeJ_T0003386.1 MGP_C3HHeJ_G0003109.1 mouse_genomes_project 13 54623784 54628444 - antisense antisense MGP_C3HHeJ_T0003387.1 MGP_C3HHeJ_G0003109.1 mouse_genomes_project 13 54624588 54628429 - antisense antisense MGP_C3HHeJ_T0003388.1 MGP_C3HHeJ_G0003109.1 mouse_genomes_project 13 54624595 54628455 - antisense antisense MGP_C3HHeJ_T0036084.1 MGP_C3HHeJ_G0020008.1 mouse_genomes_project 13 16964191 16969728 - MGP_C3HHeJ_P0036084 A530099J19Rik protein_coding protein_coding MGP_C3HHeJ_T0036867.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913208 53942958 + MGP_C3HHeJ_P0036867 Zfp346 protein_coding protein_coding MGP_C3HHeJ_T0036868.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913211 53930397 + MGP_C3HHeJ_P0036868 Zfp346 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036869.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913214 53940293 + MGP_C3HHeJ_P0036869 Zfp346 protein_coding protein_coding MGP_C3HHeJ_T0036870.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913232 53940611 + MGP_C3HHeJ_P0036870 Zfp346 protein_coding protein_coding MGP_C3HHeJ_T0036871.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913233 53940661 + MGP_C3HHeJ_P0036871 Zfp346 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036872.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913233 53938506 + MGP_C3HHeJ_P0036872 Zfp346 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036873.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913237 53940402 + MGP_C3HHeJ_P0036873 Zfp346 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036874.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913239 53940494 + MGP_C3HHeJ_P0036874 Zfp346 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036875.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53913299 53940281 + MGP_C3HHeJ_P0036875 Zfp346 protein_coding protein_coding MGP_C3HHeJ_T0036876.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53920807 53921690 + Zfp346 protein_coding retained_intron MGP_C3HHeJ_T0036877.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53929934 53940262 + Zfp346 protein_coding retained_intron MGP_C3HHeJ_T0036878.1 MGP_C3HHeJ_G0020334.1 mouse_genomes_project 13 53938129 53940536 + Zfp346 protein_coding retained_intron MGP_C3HHeJ_T0037236.1 MGP_C3HHeJ_G0020478.1 mouse_genomes_project 13 68266948 68667326 - MGP_C3HHeJ_P0037236 Adcy2 protein_coding protein_coding MGP_C3HHeJ_T0006451.1 MGP_C3HHeJ_G0005351.1 mouse_genomes_project 13 29068778 29164692 + Gm11376 lincRNA lincRNA MGP_C3HHeJ_T0000859.1 MGP_C3HHeJ_G0000799.1 mouse_genomes_project 13 90386708 90387527 + TEC TEC MGP_C3HHeJ_T0037899.1 MGP_C3HHeJ_G0020680.1 mouse_genomes_project 13 113987489 114049620 - MGP_C3HHeJ_P0037899 Skiv2l2 protein_coding protein_coding MGP_C3HHeJ_T0011264.1 MGP_C3HHeJ_G0009397.1 mouse_genomes_project 13 92001839 92002147 - Gm24597 misc_RNA misc_RNA MGP_C3HHeJ_T0036362.1 MGP_C3HHeJ_G0020165.1 mouse_genomes_project 13 27891499 28002211 + MGP_C3HHeJ_P0036362 Mboat1 protein_coding protein_coding MGP_C3HHeJ_T0036363.1 MGP_C3HHeJ_G0020165.1 mouse_genomes_project 13 27891532 27987646 + MGP_C3HHeJ_P0036363 Mboat1 protein_coding protein_coding MGP_C3HHeJ_T0036364.1 MGP_C3HHeJ_G0020165.1 mouse_genomes_project 13 27891547 27918560 + Mboat1 protein_coding processed_transcript MGP_C3HHeJ_T0037797.1 MGP_C3HHeJ_G0020651.1 mouse_genomes_project 13 105676422 105697850 - MGP_C3HHeJ_P0037797 Fam159b protein_coding protein_coding MGP_C3HHeJ_T0100159.1 MGP_C3HHeJ_G0038353.1 mouse_genomes_project 13 75850849 75850980 - Gm23319 snoRNA snoRNA MGP_C3HHeJ_T0006501.1 MGP_C3HHeJ_G0005383.1 mouse_genomes_project 13 53703031 53704276 + 5330429C05Rik lincRNA lincRNA MGP_C3HHeJ_T0037772.1 MGP_C3HHeJ_G0020643.1 mouse_genomes_project 13 104907913 104929661 + MGP_C3HHeJ_P0037772 Sgtb protein_coding protein_coding MGP_C3HHeJ_T0037773.1 MGP_C3HHeJ_G0020643.1 mouse_genomes_project 13 104907954 104940295 + MGP_C3HHeJ_P0037773 Sgtb protein_coding protein_coding MGP_C3HHeJ_T0036220.1 MGP_C3HHeJ_G0020099.1 mouse_genomes_project 13 20908420 20909268 + MGP_C3HHeJ_P0036220 Hist1h3f protein_coding protein_coding MGP_C3HHeJ_T0037684.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100744920 100759005 + MGP_C3HHeJ_P0037684 Smn1 protein_coding protein_coding MGP_C3HHeJ_T0037685.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100744926 100747211 + Smn1 protein_coding retained_intron MGP_C3HHeJ_T0037686.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100744926 100748789 + MGP_C3HHeJ_P0037686 Smn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037687.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100744962 100758795 + MGP_C3HHeJ_P0037687 Smn1 protein_coding protein_coding MGP_C3HHeJ_T0037688.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100744992 100752490 + MGP_C3HHeJ_P0037688 Smn1 protein_coding protein_coding MGP_C3HHeJ_T0037689.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100746193 100747004 + Smn1 protein_coding retained_intron MGP_C3HHeJ_T0037690.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100748851 100749607 + Smn1 protein_coding retained_intron MGP_C3HHeJ_T0037691.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100752318 100759005 + Smn1 protein_coding retained_intron MGP_C3HHeJ_T0037692.1 MGP_C3HHeJ_G0020624.1 mouse_genomes_project 13 100756708 100758765 + Smn1 protein_coding retained_intron MGP_C3HHeJ_T0037147.1 MGP_C3HHeJ_G0020429.1 mouse_genomes_project 13 64186983 64192859 + MGP_C3HHeJ_P0037147 Spata31 protein_coding protein_coding MGP_C3HHeJ_T0009834.1 MGP_C3HHeJ_G0007967.1 mouse_genomes_project 13 20878867 20878976 + n-TStga1 miRNA miRNA MGP_C3HHeJ_T0036164.1 MGP_C3HHeJ_G0020058.1 mouse_genomes_project 13 19240562 19257001 + MGP_C3HHeJ_P0036164 Zfp184 protein_coding protein_coding MGP_C3HHeJ_T0036165.1 MGP_C3HHeJ_G0020058.1 mouse_genomes_project 13 19240580 19257285 + MGP_C3HHeJ_P0036165 Zfp184 protein_coding protein_coding MGP_C3HHeJ_T0036166.1 MGP_C3HHeJ_G0020058.1 mouse_genomes_project 13 19240580 19257119 + MGP_C3HHeJ_P0036166 Zfp184 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036167.1 MGP_C3HHeJ_G0020058.1 mouse_genomes_project 13 19240605 19245798 + MGP_C3HHeJ_P0036167 Zfp184 protein_coding protein_coding MGP_C3HHeJ_T0036168.1 MGP_C3HHeJ_G0020058.1 mouse_genomes_project 13 19241261 19256855 + MGP_C3HHeJ_P0036168 Zfp184 protein_coding protein_coding MGP_C3HHeJ_T0036169.1 MGP_C3HHeJ_G0020058.1 mouse_genomes_project 13 19244862 19255227 + Zfp184 protein_coding retained_intron MGP_C3HHeJ_T0002547.1 MGP_C3HHeJ_G0002457.1 mouse_genomes_project 13 16395030 16395563 + MGP_C3HHeJ_P0002547 Tcrg-V4 TR_V_gene TR_V_gene MGP_C3HHeJ_T0036153.1 MGP_C3HHeJ_G0020050.1 mouse_genomes_project 13 19049403 19049870 - MGP_C3HHeJ_P0036153 Hist1h2ad protein_coding protein_coding MGP_C3HHeJ_T0097857.1 MGP_C3HHeJ_G0036069.1 mouse_genomes_project 13 45294972 45295491 + pseudogene pseudogene MGP_C3HHeJ_T0012791.1 MGP_C3HHeJ_G0010895.1 mouse_genomes_project 13 42610802 42611782 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037893.1 MGP_C3HHeJ_G0020676.1 mouse_genomes_project 13 113620940 113683613 - MGP_C3HHeJ_P0037893 Il31ra protein_coding protein_coding MGP_C3HHeJ_T0100142.1 MGP_C3HHeJ_G0038336.1 mouse_genomes_project 13 33139575 33139706 - Gm22674 snoRNA snoRNA MGP_C3HHeJ_T0036045.1 MGP_C3HHeJ_G0019993.1 mouse_genomes_project 13 11794049 11805932 + MGP_C3HHeJ_P0036045 Psma2 protein_coding protein_coding MGP_C3HHeJ_T0012765.1 MGP_C3HHeJ_G0010869.1 mouse_genomes_project 13 21800668 21801003 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036103.1 MGP_C3HHeJ_G0020017.1 mouse_genomes_project 13 18595035 18596090 + MGP_C3HHeJ_P0036103 Olfr1367 protein_coding protein_coding MGP_C3HHeJ_T0009833.1 MGP_C3HHeJ_G0007966.1 mouse_genomes_project 13 19398153 19398247 - Gm26300 miRNA miRNA MGP_C3HHeJ_T0036992.1 MGP_C3HHeJ_G0020380.1 mouse_genomes_project 13 57240490 57304354 - MGP_C3HHeJ_P0036992 Kif27 protein_coding protein_coding MGP_C3HHeJ_T0037713.1 MGP_C3HHeJ_G0020630.1 mouse_genomes_project 13 101323739 101339600 + MGP_C3HHeJ_P0037713 protein_coding protein_coding MGP_C3HHeJ_T0037714.1 MGP_C3HHeJ_G0020630.1 mouse_genomes_project 13 101324122 101327319 + protein_coding retained_intron MGP_C3HHeJ_T0037715.1 MGP_C3HHeJ_G0020630.1 mouse_genomes_project 13 101324386 101327397 + protein_coding retained_intron MGP_C3HHeJ_T0036884.1 MGP_C3HHeJ_G0020338.1 mouse_genomes_project 13 54138496 54141254 - MGP_C3HHeJ_P0036884 Rab24 protein_coding protein_coding MGP_C3HHeJ_T0037311.1 MGP_C3HHeJ_G0020509.1 mouse_genomes_project 13 74076095 74091946 - MGP_C3HHeJ_P0037311 Pdcd6 protein_coding protein_coding MGP_C3HHeJ_T0017139.1 MGP_C3HHeJ_G0015019.1 mouse_genomes_project 13 80812278 80813580 - 1700023H06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0037331.1 MGP_C3HHeJ_G0020517.1 mouse_genomes_project 13 75583948 75654142 + MGP_C3HHeJ_P0037331 Ell2 protein_coding protein_coding MGP_C3HHeJ_T0100152.1 MGP_C3HHeJ_G0038346.1 mouse_genomes_project 13 55818890 55819019 - Gm22777 snoRNA snoRNA MGP_C3HHeJ_T0009882.1 MGP_C3HHeJ_G0008015.1 mouse_genomes_project 13 115757743 115757843 + Gm25950 miRNA miRNA MGP_C3HHeJ_T0011257.1 MGP_C3HHeJ_G0009390.1 mouse_genomes_project 13 43491617 43491960 - Gm23755 misc_RNA misc_RNA MGP_C3HHeJ_T0037206.1 MGP_C3HHeJ_G0020462.1 mouse_genomes_project 13 67019314 67029712 - MGP_C3HHeJ_P0037206 Zfp87 protein_coding protein_coding MGP_C3HHeJ_T0037207.1 MGP_C3HHeJ_G0020462.1 mouse_genomes_project 13 67021110 67029656 - MGP_C3HHeJ_P0037207 Zfp87 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037208.1 MGP_C3HHeJ_G0020462.1 mouse_genomes_project 13 67021515 67029681 - MGP_C3HHeJ_P0037208 Zfp87 protein_coding protein_coding MGP_C3HHeJ_T0037209.1 MGP_C3HHeJ_G0020462.1 mouse_genomes_project 13 67024576 67029712 - MGP_C3HHeJ_P0037209 Zfp87 protein_coding protein_coding MGP_C3HHeJ_T0037520.1 MGP_C3HHeJ_G0020562.1 mouse_genomes_project 13 92867370 92868972 - MGP_C3HHeJ_P0037520 Spz1 protein_coding protein_coding MGP_C3HHeJ_T0036737.1 MGP_C3HHeJ_G0020305.1 mouse_genomes_project 13 51186457 51214674 - MGP_C3HHeJ_P0036737 Diras2 protein_coding protein_coding MGP_C3HHeJ_T0037667.1 MGP_C3HHeJ_G0020617.1 mouse_genomes_project 13 99934501 99959255 - MGP_C3HHeJ_P0037667 Ptcd2 protein_coding protein_coding MGP_C3HHeJ_T0036952.1 MGP_C3HHeJ_G0020363.1 mouse_genomes_project 13 55036003 55041166 - MGP_C3HHeJ_P0036952 Tifab protein_coding protein_coding MGP_C3HHeJ_T0036684.1 MGP_C3HHeJ_G0020290.1 mouse_genomes_project 13 48060245 48087080 + MGP_C3HHeJ_P0036684 Nol8 protein_coding protein_coding MGP_C3HHeJ_T0037524.1 MGP_C3HHeJ_G0020565.1 mouse_genomes_project 13 93128674 93142118 + MGP_C3HHeJ_P0037524 Mtx3 protein_coding protein_coding MGP_C3HHeJ_T0036033.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11235573 11308565 + Arid4b protein_coding processed_transcript MGP_C3HHeJ_T0036034.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11236125 11352722 + MGP_C3HHeJ_P0036034 Arid4b protein_coding protein_coding MGP_C3HHeJ_T0036035.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11236126 11384589 + MGP_C3HHeJ_P0036035 Arid4b protein_coding protein_coding MGP_C3HHeJ_T0036036.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11236133 11384584 + MGP_C3HHeJ_P0036036 Arid4b protein_coding protein_coding MGP_C3HHeJ_T0036037.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11236133 11384825 + MGP_C3HHeJ_P0036037 Arid4b protein_coding protein_coding MGP_C3HHeJ_T0036038.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11236140 11348444 + MGP_C3HHeJ_P0036038 Arid4b protein_coding protein_coding MGP_C3HHeJ_T0036039.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11236396 11299453 + Arid4b protein_coding processed_transcript MGP_C3HHeJ_T0036040.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11352740 11378947 + MGP_C3HHeJ_P0036040 Arid4b protein_coding protein_coding MGP_C3HHeJ_T0036041.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11361533 11375764 + Arid4b protein_coding processed_transcript MGP_C3HHeJ_T0036042.1 MGP_C3HHeJ_G0019990.1 mouse_genomes_project 13 11375706 11382976 + Arid4b protein_coding processed_transcript MGP_C3HHeJ_T0036052.1 MGP_C3HHeJ_G0019996.1 mouse_genomes_project 13 13157463 13172327 + MGP_C3HHeJ_P0036052 Inhba protein_coding protein_coding MGP_C3HHeJ_T0036053.1 MGP_C3HHeJ_G0019996.1 mouse_genomes_project 13 13160087 13172350 + MGP_C3HHeJ_P0036053 Inhba protein_coding protein_coding MGP_C3HHeJ_T0009866.1 MGP_C3HHeJ_G0007999.1 mouse_genomes_project 13 76227825 76227906 - Gm24025 miRNA miRNA MGP_C3HHeJ_T0100161.1 MGP_C3HHeJ_G0038355.1 mouse_genomes_project 13 77542981 77543112 + Gm26088 snoRNA snoRNA MGP_C3HHeJ_T0037483.1 MGP_C3HHeJ_G0020552.1 mouse_genomes_project 13 91998648 92057228 + MGP_C3HHeJ_P0037483 Acot12 protein_coding protein_coding MGP_C3HHeJ_T0037484.1 MGP_C3HHeJ_G0020552.1 mouse_genomes_project 13 91998669 92032581 + Acot12 protein_coding retained_intron MGP_C3HHeJ_T0037485.1 MGP_C3HHeJ_G0020552.1 mouse_genomes_project 13 92050417 92055984 + Acot12 protein_coding processed_transcript MGP_C3HHeJ_T0035886.1 MGP_C3HHeJ_G0019938.1 mouse_genomes_project 13 279456 298904 + MGP_C3HHeJ_P0035886 Asb13 protein_coding protein_coding MGP_C3HHeJ_T0035887.1 MGP_C3HHeJ_G0019938.1 mouse_genomes_project 13 279513 280207 + Asb13 protein_coding processed_transcript MGP_C3HHeJ_T0035888.1 MGP_C3HHeJ_G0019938.1 mouse_genomes_project 13 279522 297616 + Asb13 protein_coding processed_transcript MGP_C3HHeJ_T0035889.1 MGP_C3HHeJ_G0019938.1 mouse_genomes_project 13 279523 288950 + Asb13 protein_coding retained_intron MGP_C3HHeJ_T0006562.1 MGP_C3HHeJ_G0005428.1 mouse_genomes_project 13 113072089 113084174 + Gm15323 lincRNA lincRNA MGP_C3HHeJ_T0037511.1 MGP_C3HHeJ_G0020558.1 mouse_genomes_project 13 92615150 92648818 + MGP_C3HHeJ_P0037511 Dhfr protein_coding protein_coding MGP_C3HHeJ_T0012801.1 MGP_C3HHeJ_G0010905.1 mouse_genomes_project 13 66963337 66964037 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009840.1 MGP_C3HHeJ_G0007973.1 mouse_genomes_project 13 36018709 36018825 + Gm27387 miRNA miRNA MGP_C3HHeJ_T0036646.1 MGP_C3HHeJ_G0020276.1 mouse_genomes_project 13 47168773 47242485 - MGP_C3HHeJ_P0036646 Phf2 protein_coding protein_coding MGP_C3HHeJ_T0037017.1 MGP_C3HHeJ_G0020385.1 mouse_genomes_project 13 57771879 57906805 + MGP_C3HHeJ_P0037017 protein_coding protein_coding MGP_C3HHeJ_T0037018.1 MGP_C3HHeJ_G0020385.1 mouse_genomes_project 13 57773183 58105510 + MGP_C3HHeJ_P0037018 protein_coding protein_coding MGP_C3HHeJ_T0098364.1 MGP_C3HHeJ_G0036572.1 mouse_genomes_project 13 91612290 91612743 - Gm29540 sense_intronic sense_intronic MGP_C3HHeJ_T0101718.1 MGP_C3HHeJ_G0039683.1 mouse_genomes_project 13 30812388 30812546 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003416.1 MGP_C3HHeJ_G0003122.1 mouse_genomes_project 13 91963719 91999009 - 4833422C13Rik antisense antisense MGP_C3HHeJ_T0003417.1 MGP_C3HHeJ_G0003122.1 mouse_genomes_project 13 91969950 91998913 - 4833422C13Rik antisense antisense MGP_C3HHeJ_T0003418.1 MGP_C3HHeJ_G0003122.1 mouse_genomes_project 13 91975247 91998965 - 4833422C13Rik antisense antisense MGP_C3HHeJ_T0036614.1 MGP_C3HHeJ_G0020266.1 mouse_genomes_project 13 45296854 45299137 - MGP_C3HHeJ_P0036614 Nhlrc1 protein_coding protein_coding MGP_C3HHeJ_T0006558.1 MGP_C3HHeJ_G0005425.1 mouse_genomes_project 13 112919548 112921058 + Gm15324 lincRNA lincRNA MGP_C3HHeJ_T0037221.1 MGP_C3HHeJ_G0020468.1 mouse_genomes_project 13 67302815 67313276 - MGP_C3HHeJ_P0037221 protein_coding protein_coding MGP_C3HHeJ_T0101702.1 MGP_C3HHeJ_G0039667.1 mouse_genomes_project 13 20181071 20181946 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012816.1 MGP_C3HHeJ_G0010920.1 mouse_genomes_project 13 80016655 80017820 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037582.1 MGP_C3HHeJ_G0020582.1 mouse_genomes_project 13 95698657 95711661 + MGP_C3HHeJ_P0037582 Zbed3 protein_coding protein_coding MGP_C3HHeJ_T0037639.1 MGP_C3HHeJ_G0020606.1 mouse_genomes_project 13 98830320 98842690 + MGP_C3HHeJ_P0037639 Ankra2 protein_coding protein_coding MGP_C3HHeJ_T0037640.1 MGP_C3HHeJ_G0020606.1 mouse_genomes_project 13 98830323 98842692 + MGP_C3HHeJ_P0037640 Ankra2 protein_coding protein_coding MGP_C3HHeJ_T0037641.1 MGP_C3HHeJ_G0020606.1 mouse_genomes_project 13 98830388 98843524 + MGP_C3HHeJ_P0037641 Ankra2 protein_coding protein_coding MGP_C3HHeJ_T0037642.1 MGP_C3HHeJ_G0020606.1 mouse_genomes_project 13 98830541 98842691 + MGP_C3HHeJ_P0037642 Ankra2 protein_coding protein_coding MGP_C3HHeJ_T0037643.1 MGP_C3HHeJ_G0020606.1 mouse_genomes_project 13 98837203 98840241 + Ankra2 protein_coding retained_intron MGP_C3HHeJ_T0037074.1 MGP_C3HHeJ_G0020399.1 mouse_genomes_project 13 59880321 59899647 - MGP_C3HHeJ_P0037074 4930486L24Rik protein_coding protein_coding MGP_C3HHeJ_T0037474.1 MGP_C3HHeJ_G0020550.1 mouse_genomes_project 13 91159240 91453333 - MGP_C3HHeJ_P0037474 Atg10 protein_coding protein_coding MGP_C3HHeJ_T0009845.1 MGP_C3HHeJ_G0007978.1 mouse_genomes_project 13 46894005 46894094 - Mirlet7f-1 miRNA miRNA MGP_C3HHeJ_T0003392.1 MGP_C3HHeJ_G0003111.1 mouse_genomes_project 13 62566137 62572936 + Gm16133 antisense antisense MGP_C3HHeJ_T0003393.1 MGP_C3HHeJ_G0003111.1 mouse_genomes_project 13 62566210 62572933 + Gm16133 antisense antisense MGP_C3HHeJ_T0098242.1 MGP_C3HHeJ_G0036454.1 mouse_genomes_project 13 31388118 31388330 + Gm25043 ribozyme ribozyme MGP_C3HHeJ_T0035999.1 MGP_C3HHeJ_G0019974.1 mouse_genomes_project 13 9356946 9378356 - MGP_C3HHeJ_P0035999 Lgals8 protein_coding protein_coding MGP_C3HHeJ_T0036000.1 MGP_C3HHeJ_G0019974.1 mouse_genomes_project 13 9356951 9365667 - Lgals8 protein_coding retained_intron MGP_C3HHeJ_T0036001.1 MGP_C3HHeJ_G0019974.1 mouse_genomes_project 13 9358379 9378399 - MGP_C3HHeJ_P0036001 Lgals8 protein_coding protein_coding MGP_C3HHeJ_T0036002.1 MGP_C3HHeJ_G0019974.1 mouse_genomes_project 13 9368321 9373428 - Lgals8 protein_coding retained_intron MGP_C3HHeJ_T0036003.1 MGP_C3HHeJ_G0019974.1 mouse_genomes_project 13 9369642 9371919 - Lgals8 protein_coding retained_intron MGP_C3HHeJ_T0036004.1 MGP_C3HHeJ_G0019974.1 mouse_genomes_project 13 9376174 9377951 - Lgals8 protein_coding processed_transcript MGP_C3HHeJ_T0036436.1 MGP_C3HHeJ_G0020198.1 mouse_genomes_project 13 32012438 32021823 + MGP_C3HHeJ_P0036436 Psmg4 protein_coding protein_coding MGP_C3HHeJ_T0036437.1 MGP_C3HHeJ_G0020198.1 mouse_genomes_project 13 32012438 32021827 + MGP_C3HHeJ_P0036437 Psmg4 protein_coding protein_coding MGP_C3HHeJ_T0037665.1 MGP_C3HHeJ_G0020615.1 mouse_genomes_project 13 99599307 99599788 - MGP_C3HHeJ_P0037665 1700024P04Rik protein_coding protein_coding MGP_C3HHeJ_T0036826.1 MGP_C3HHeJ_G0020327.1 mouse_genomes_project 13 53523561 53536148 - MGP_C3HHeJ_P0036826 Gprin1 protein_coding protein_coding MGP_C3HHeJ_T0036518.1 MGP_C3HHeJ_G0020229.1 mouse_genomes_project 13 38931599 39038407 + MGP_C3HHeJ_P0036518 Gcnt2 protein_coding protein_coding MGP_C3HHeJ_T0036519.1 MGP_C3HHeJ_G0020229.1 mouse_genomes_project 13 38959951 39038407 + MGP_C3HHeJ_P0036519 Gcnt2 protein_coding protein_coding MGP_C3HHeJ_T0036520.1 MGP_C3HHeJ_G0020229.1 mouse_genomes_project 13 38992054 39038407 + MGP_C3HHeJ_P0036520 Gcnt2 protein_coding protein_coding MGP_C3HHeJ_T0100150.1 MGP_C3HHeJ_G0038344.1 mouse_genomes_project 13 50300745 50301619 + Gm22806 snoRNA snoRNA MGP_C3HHeJ_T0009835.1 MGP_C3HHeJ_G0007968.1 mouse_genomes_project 13 20935063 20935198 + Gm44357 miRNA miRNA MGP_C3HHeJ_T0006527.1 MGP_C3HHeJ_G0005402.1 mouse_genomes_project 13 83762870 83770710 - Gm26803 lincRNA lincRNA MGP_C3HHeJ_T0003394.1 MGP_C3HHeJ_G0003112.1 mouse_genomes_project 13 63516076 63535390 + 1810034E14Rik antisense antisense MGP_C3HHeJ_T0003395.1 MGP_C3HHeJ_G0003112.1 mouse_genomes_project 13 63516148 63533720 + 1810034E14Rik antisense antisense MGP_C3HHeJ_T0003396.1 MGP_C3HHeJ_G0003112.1 mouse_genomes_project 13 63533722 63535390 + 1810034E14Rik antisense antisense MGP_C3HHeJ_T0037143.1 MGP_C3HHeJ_G0020425.1 mouse_genomes_project 13 63629608 63636588 - MGP_C3HHeJ_P0037143 Ctsl protein_coding protein_coding MGP_C3HHeJ_T0037189.1 MGP_C3HHeJ_G0020450.1 mouse_genomes_project 13 66713567 66727672 - MGP_C3HHeJ_P0037189 Zfp458 protein_coding protein_coding MGP_C3HHeJ_T0036057.1 MGP_C3HHeJ_G0020000.1 mouse_genomes_project 13 15076037 15130217 - MGP_C3HHeJ_P0036057 Rala protein_coding protein_coding MGP_C3HHeJ_T0003368.1 MGP_C3HHeJ_G0003093.1 mouse_genomes_project 13 21173927 21183741 - Gm11337 antisense antisense MGP_C3HHeJ_T0000873.1 MGP_C3HHeJ_G0000813.1 mouse_genomes_project 13 117585255 117588166 + TEC TEC MGP_C3HHeJ_T0037293.1 MGP_C3HHeJ_G0020501.1 mouse_genomes_project 13 73697970 73721357 + MGP_C3HHeJ_P0037293 Brd9 protein_coding protein_coding MGP_C3HHeJ_T0037294.1 MGP_C3HHeJ_G0020501.1 mouse_genomes_project 13 73697987 73721355 + MGP_C3HHeJ_P0037294 Brd9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036163.1 MGP_C3HHeJ_G0020057.1 mouse_genomes_project 13 19112562 19112964 - MGP_C3HHeJ_P0036163 Hist1h4m protein_coding protein_coding MGP_C3HHeJ_T0009858.1 MGP_C3HHeJ_G0007991.1 mouse_genomes_project 13 61990302 61990410 + Gm23739 miRNA miRNA MGP_C3HHeJ_T0000861.1 MGP_C3HHeJ_G0000801.1 mouse_genomes_project 13 90608912 90609806 - TEC TEC MGP_C3HHeJ_T0036188.1 MGP_C3HHeJ_G0020073.1 mouse_genomes_project 13 19730600 19731399 + MGP_C3HHeJ_P0036188 Vmn1r189 protein_coding protein_coding MGP_C3HHeJ_T0006467.1 MGP_C3HHeJ_G0005361.1 mouse_genomes_project 13 35322403 35324850 - Gm4035 lincRNA lincRNA MGP_C3HHeJ_T0006468.1 MGP_C3HHeJ_G0005361.1 mouse_genomes_project 13 35322515 35336440 - Gm4035 lincRNA lincRNA MGP_C3HHeJ_T0100167.1 MGP_C3HHeJ_G0038361.1 mouse_genomes_project 13 95704419 95704557 + Snora47 snoRNA snoRNA MGP_C3HHeJ_T0101708.1 MGP_C3HHeJ_G0039673.1 mouse_genomes_project 13 20361902 20362380 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036138.1 MGP_C3HHeJ_G0020035.1 mouse_genomes_project 13 18939222 18940225 - MGP_C3HHeJ_P0036138 Olfr1360 protein_coding protein_coding MGP_C3HHeJ_T0101714.1 MGP_C3HHeJ_G0039679.1 mouse_genomes_project 13 21103391 21104947 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006536.1 MGP_C3HHeJ_G0005408.1 mouse_genomes_project 13 96541692 96542659 + Gm29543 lincRNA lincRNA MGP_C3HHeJ_T0000871.1 MGP_C3HHeJ_G0000811.1 mouse_genomes_project 13 113309016 113310277 + TEC TEC MGP_C3HHeJ_T0012773.1 MGP_C3HHeJ_G0010877.1 mouse_genomes_project 13 24333543 24333849 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036223.1 MGP_C3HHeJ_G0020102.1 mouse_genomes_project 13 20919507 20920198 + MGP_C3HHeJ_P0036223 Hist1h1d protein_coding protein_coding MGP_C3HHeJ_T0006552.1 MGP_C3HHeJ_G0005420.1 mouse_genomes_project 13 102341687 102342303 - Gm29341 lincRNA lincRNA MGP_C3HHeJ_T0009852.1 MGP_C3HHeJ_G0007985.1 mouse_genomes_project 13 54339275 54339343 - Mir6945 miRNA miRNA MGP_C3HHeJ_T0098887.1 MGP_C3HHeJ_G0037081.1 mouse_genomes_project 13 29508403 29508511 - Gm25186 snRNA snRNA MGP_C3HHeJ_T0098032.1 MGP_C3HHeJ_G0036244.1 mouse_genomes_project 13 114531147 114531248 + Gm22385 rRNA rRNA MGP_C3HHeJ_T0012808.1 MGP_C3HHeJ_G0010912.1 mouse_genomes_project 13 69667685 69668096 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012776.1 MGP_C3HHeJ_G0010880.1 mouse_genomes_project 13 26205559 26206048 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012812.1 MGP_C3HHeJ_G0010916.1 mouse_genomes_project 13 76585831 76586251 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011261.1 MGP_C3HHeJ_G0009394.1 mouse_genomes_project 13 55596081 55596208 + Gm27301 misc_RNA misc_RNA MGP_C3HHeJ_T0037466.1 MGP_C3HHeJ_G0020546.1 mouse_genomes_project 13 90311647 90334765 + MGP_C3HHeJ_P0037466 Tmem167 protein_coding protein_coding MGP_C3HHeJ_T0037467.1 MGP_C3HHeJ_G0020546.1 mouse_genomes_project 13 90312259 90366663 + MGP_C3HHeJ_P0037467 Tmem167 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037468.1 MGP_C3HHeJ_G0020546.1 mouse_genomes_project 13 90312287 90327168 + MGP_C3HHeJ_P0037468 Tmem167 protein_coding protein_coding MGP_C3HHeJ_T0036391.1 MGP_C3HHeJ_G0020181.1 mouse_genomes_project 13 30654966 30663965 - MGP_C3HHeJ_P0036391 Serpinb1a protein_coding protein_coding MGP_C3HHeJ_T0036392.1 MGP_C3HHeJ_G0020181.1 mouse_genomes_project 13 30654967 30663965 - MGP_C3HHeJ_P0036392 Serpinb1a protein_coding protein_coding MGP_C3HHeJ_T0017146.1 MGP_C3HHeJ_G0015024.1 mouse_genomes_project 13 120828107 120831076 - Gm9752 processed_transcript processed_transcript MGP_C3HHeJ_T0003375.1 MGP_C3HHeJ_G0003099.1 mouse_genomes_project 13 31756505 31763592 + 1110046J04Rik antisense antisense MGP_C3HHeJ_T0003376.1 MGP_C3HHeJ_G0003099.1 mouse_genomes_project 13 31761440 31785164 + 1110046J04Rik antisense antisense MGP_C3HHeJ_T0036429.1 MGP_C3HHeJ_G0020194.1 mouse_genomes_project 13 31830358 31863036 + MGP_C3HHeJ_P0036429 Ripk1 protein_coding protein_coding MGP_C3HHeJ_T0036430.1 MGP_C3HHeJ_G0020194.1 mouse_genomes_project 13 31830395 31842683 + Ripk1 protein_coding retained_intron MGP_C3HHeJ_T0036431.1 MGP_C3HHeJ_G0020194.1 mouse_genomes_project 13 31830869 31864529 + MGP_C3HHeJ_P0036431 Ripk1 protein_coding protein_coding MGP_C3HHeJ_T0036432.1 MGP_C3HHeJ_G0020194.1 mouse_genomes_project 13 31837694 31862141 + MGP_C3HHeJ_P0036432 Ripk1 protein_coding protein_coding MGP_C3HHeJ_T0036338.1 MGP_C3HHeJ_G0020154.1 mouse_genomes_project 13 25124421 25133217 - MGP_C3HHeJ_P0036338 Prl7b1 protein_coding protein_coding MGP_C3HHeJ_T0037292.1 MGP_C3HHeJ_G0020500.1 mouse_genomes_project 13 73670689 73697900 - MGP_C3HHeJ_P0037292 Trip13 protein_coding protein_coding MGP_C3HHeJ_T0101705.1 MGP_C3HHeJ_G0039670.1 mouse_genomes_project 13 20244605 20244842 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037395.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83528993 83698426 + MGP_C3HHeJ_P0037395 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037396.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83529165 83698769 + MGP_C3HHeJ_P0037396 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037397.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83529199 83702158 + MGP_C3HHeJ_P0037397 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037398.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83529199 83626625 + MGP_C3HHeJ_P0037398 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037399.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83529199 83702158 + MGP_C3HHeJ_P0037399 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037400.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83529199 83626559 + MGP_C3HHeJ_P0037400 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037401.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83550510 83659081 + MGP_C3HHeJ_P0037401 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037402.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83552812 83666823 + MGP_C3HHeJ_P0037402 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037403.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83553303 83557856 + Mef2c protein_coding retained_intron MGP_C3HHeJ_T0037404.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83553360 83699541 + MGP_C3HHeJ_P0037404 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037405.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83553361 83659223 + MGP_C3HHeJ_P0037405 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037406.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83553367 83698776 + MGP_C3HHeJ_P0037406 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037407.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83553397 83688052 + MGP_C3HHeJ_P0037407 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037408.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83553426 83667575 + Mef2c protein_coding retained_intron MGP_C3HHeJ_T0037409.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83558644 83659072 + MGP_C3HHeJ_P0037409 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037410.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83604324 83669141 + MGP_C3HHeJ_P0037410 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037411.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83604357 83659260 + MGP_C3HHeJ_P0037411 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037412.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83605583 83702160 + MGP_C3HHeJ_P0037412 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037413.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83605594 83610387 + Mef2c protein_coding retained_intron MGP_C3HHeJ_T0037414.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83605598 83699554 + MGP_C3HHeJ_P0037414 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037415.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83605601 83666924 + MGP_C3HHeJ_P0037415 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037416.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83607121 83688005 + MGP_C3HHeJ_P0037416 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037417.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83607186 83666849 + MGP_C3HHeJ_P0037417 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037418.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83607653 83702160 + MGP_C3HHeJ_P0037418 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037419.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83607653 83697714 + MGP_C3HHeJ_P0037419 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037420.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83607653 83697714 + MGP_C3HHeJ_P0037420 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037421.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83659290 83697819 + MGP_C3HHeJ_P0037421 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0037422.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83666748 83690661 + MGP_C3HHeJ_P0037422 Mef2c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037423.1 MGP_C3HHeJ_G0020537.1 mouse_genomes_project 13 83688029 83697822 + MGP_C3HHeJ_P0037423 Mef2c protein_coding protein_coding MGP_C3HHeJ_T0036226.1 MGP_C3HHeJ_G0020105.1 mouse_genomes_project 13 20947848 20948241 + MGP_C3HHeJ_P0036226 Hist1h4d protein_coding protein_coding MGP_C3HHeJ_T0037119.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63066728 63104900 + MGP_C3HHeJ_P0037119 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037120.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63066790 63124984 + MGP_C3HHeJ_P0037120 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037121.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63066822 63088662 + Ercc6l2 protein_coding processed_transcript MGP_C3HHeJ_T0037122.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63066822 63122006 + MGP_C3HHeJ_P0037122 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037123.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63066822 63104865 + MGP_C3HHeJ_P0037123 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037124.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63071906 63121651 + MGP_C3HHeJ_P0037124 Ercc6l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037125.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63071908 63109394 + MGP_C3HHeJ_P0037125 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037126.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63071908 63122027 + MGP_C3HHeJ_P0037126 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037127.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63072231 63093329 + MGP_C3HHeJ_P0037127 Ercc6l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037128.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63122881 63124891 + Ercc6l2 protein_coding processed_transcript MGP_C3HHeJ_T0037129.1 MGP_C3HHeJ_G0020418.1 mouse_genomes_project 13 63124848 63152719 + MGP_C3HHeJ_P0037129 Ercc6l2 protein_coding protein_coding MGP_C3HHeJ_T0037679.1 MGP_C3HHeJ_G0020623.1 mouse_genomes_project 13 100731896 100738899 + MGP_C3HHeJ_P0037679 Serf1 protein_coding protein_coding MGP_C3HHeJ_T0037680.1 MGP_C3HHeJ_G0020623.1 mouse_genomes_project 13 100731969 100735670 + MGP_C3HHeJ_P0037680 Serf1 protein_coding protein_coding MGP_C3HHeJ_T0037681.1 MGP_C3HHeJ_G0020623.1 mouse_genomes_project 13 100732039 100739232 + MGP_C3HHeJ_P0037681 Serf1 protein_coding protein_coding MGP_C3HHeJ_T0037682.1 MGP_C3HHeJ_G0020623.1 mouse_genomes_project 13 100732225 100738899 + MGP_C3HHeJ_P0037682 Serf1 protein_coding protein_coding MGP_C3HHeJ_T0037683.1 MGP_C3HHeJ_G0020623.1 mouse_genomes_project 13 100732280 100738892 + MGP_C3HHeJ_P0037683 Serf1 protein_coding protein_coding MGP_C3HHeJ_T0036682.1 MGP_C3HHeJ_G0020288.1 mouse_genomes_project 13 47988020 47997104 + MGP_C3HHeJ_P0036682 Omd protein_coding protein_coding MGP_C3HHeJ_T0036015.1 MGP_C3HHeJ_G0019985.1 mouse_genomes_project 13 10958341 10981442 + Gng4 protein_coding processed_transcript MGP_C3HHeJ_T0036016.1 MGP_C3HHeJ_G0019985.1 mouse_genomes_project 13 10958611 11003747 + MGP_C3HHeJ_P0036016 Gng4 protein_coding protein_coding MGP_C3HHeJ_T0009883.1 MGP_C3HHeJ_G0008016.1 mouse_genomes_project 13 120593017 120593130 - Gm44488 miRNA miRNA MGP_C3HHeJ_T0036474.1 MGP_C3HHeJ_G0020210.1 mouse_genomes_project 13 33838548 33974666 - MGP_C3HHeJ_P0036474 Lyrm4 protein_coding protein_coding MGP_C3HHeJ_T0003374.1 MGP_C3HHeJ_G0003098.1 mouse_genomes_project 13 29567743 29570783 + Gm11379 antisense antisense MGP_C3HHeJ_T0037787.1 MGP_C3HHeJ_G0020648.1 mouse_genomes_project 13 105096900 105310036 + MGP_C3HHeJ_P0037787 Adamts6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036292.1 MGP_C3HHeJ_G0020131.1 mouse_genomes_project 13 22207049 22219406 + MGP_C3HHeJ_P0036292 BC005537 protein_coding protein_coding MGP_C3HHeJ_T0036293.1 MGP_C3HHeJ_G0020131.1 mouse_genomes_project 13 22207412 22218053 + MGP_C3HHeJ_P0036293 BC005537 protein_coding protein_coding MGP_C3HHeJ_T0101689.1 MGP_C3HHeJ_G0039654.1 mouse_genomes_project 13 19677487 19678373 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036185.1 MGP_C3HHeJ_G0020070.1 mouse_genomes_project 13 19624297 19625194 + MGP_C3HHeJ_P0036185 Vmn1r197 protein_coding protein_coding MGP_C3HHeJ_T0101697.1 MGP_C3HHeJ_G0039662.1 mouse_genomes_project 13 19932771 19933865 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036341.1 MGP_C3HHeJ_G0020156.1 mouse_genomes_project 13 25185254 25194335 - MGP_C3HHeJ_P0036341 Prl7a2 protein_coding protein_coding MGP_C3HHeJ_T0035995.1 MGP_C3HHeJ_G0019972.1 mouse_genomes_project 13 9181307 9254966 - MGP_C3HHeJ_P0035995 Actn2 protein_coding protein_coding MGP_C3HHeJ_T0035996.1 MGP_C3HHeJ_G0019972.1 mouse_genomes_project 13 9181316 9254930 - MGP_C3HHeJ_P0035996 Actn2 protein_coding protein_coding MGP_C3HHeJ_T0035997.1 MGP_C3HHeJ_G0019972.1 mouse_genomes_project 13 9221503 9254938 - MGP_C3HHeJ_P0035997 Actn2 protein_coding protein_coding MGP_C3HHeJ_T0012836.1 MGP_C3HHeJ_G0010940.1 mouse_genomes_project 13 116755038 116756130 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037182.1 MGP_C3HHeJ_G0020445.1 mouse_genomes_project 13 66526724 66544188 - MGP_C3HHeJ_P0037182 Rslcan18 protein_coding protein_coding MGP_C3HHeJ_T0037184.1 MGP_C3HHeJ_G0020445.1 mouse_genomes_project 13 66541176 66546404 - Rslcan18 protein_coding retained_intron MGP_C3HHeJ_T0035917.1 MGP_C3HHeJ_G0019953.1 mouse_genomes_project 13 1284781 1304362 - MGP_C3HHeJ_P0035917 Akr1e1 protein_coding protein_coding MGP_C3HHeJ_T0035918.1 MGP_C3HHeJ_G0019953.1 mouse_genomes_project 13 1286514 1304362 - MGP_C3HHeJ_P0035918 Akr1e1 protein_coding protein_coding MGP_C3HHeJ_T0035919.1 MGP_C3HHeJ_G0019953.1 mouse_genomes_project 13 1295301 1304322 - Akr1e1 protein_coding processed_transcript MGP_C3HHeJ_T0036677.1 MGP_C3HHeJ_G0020284.1 mouse_genomes_project 13 47817330 47863540 + MGP_C3HHeJ_P0036677 Ippk protein_coding protein_coding MGP_C3HHeJ_T0037091.1 MGP_C3HHeJ_G0020414.1 mouse_genomes_project 13 62096391 62120670 - MGP_C3HHeJ_P0037091 Fbp1 protein_coding protein_coding MGP_C3HHeJ_T0037092.1 MGP_C3HHeJ_G0020414.1 mouse_genomes_project 13 62096404 62104544 - MGP_C3HHeJ_P0037092 Fbp1 protein_coding protein_coding MGP_C3HHeJ_T0037093.1 MGP_C3HHeJ_G0020414.1 mouse_genomes_project 13 62104504 62120515 - MGP_C3HHeJ_P0037093 Fbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037255.1 MGP_C3HHeJ_G0020486.1 mouse_genomes_project 13 70586825 70588381 + MGP_C3HHeJ_P0037255 8030423J24Rik protein_coding protein_coding MGP_C3HHeJ_T0006475.1 MGP_C3HHeJ_G0005368.1 mouse_genomes_project 13 40158484 40159409 + Gm28707 lincRNA lincRNA MGP_C3HHeJ_T0037333.1 MGP_C3HHeJ_G0020519.1 mouse_genomes_project 13 75746445 75829974 - MGP_C3HHeJ_P0037333 Rhobtb3 protein_coding protein_coding MGP_C3HHeJ_T0037334.1 MGP_C3HHeJ_G0020519.1 mouse_genomes_project 13 75748958 75762559 - Rhobtb3 protein_coding processed_transcript MGP_C3HHeJ_T0037335.1 MGP_C3HHeJ_G0020519.1 mouse_genomes_project 13 75793854 75830032 - MGP_C3HHeJ_P0037335 Rhobtb3 protein_coding protein_coding MGP_C3HHeJ_T0036711.1 MGP_C3HHeJ_G0020297.1 mouse_genomes_project 13 49721285 49773933 + MGP_C3HHeJ_P0036711 Spin1 protein_coding protein_coding MGP_C3HHeJ_T0036827.1 MGP_C3HHeJ_G0020328.1 mouse_genomes_project 13 53545908 53555669 - MGP_C3HHeJ_P0036827 Sncb protein_coding protein_coding MGP_C3HHeJ_T0036828.1 MGP_C3HHeJ_G0020328.1 mouse_genomes_project 13 53547213 53555171 - MGP_C3HHeJ_P0036828 Sncb protein_coding protein_coding MGP_C3HHeJ_T0036829.1 MGP_C3HHeJ_G0020328.1 mouse_genomes_project 13 53547260 53550898 - Sncb protein_coding retained_intron MGP_C3HHeJ_T0036830.1 MGP_C3HHeJ_G0020328.1 mouse_genomes_project 13 53552889 53555566 - Sncb protein_coding retained_intron MGP_C3HHeJ_T0036240.1 MGP_C3HHeJ_G0020115.1 mouse_genomes_project 13 21135700 21136097 + MGP_C3HHeJ_P0036240 Hist1h4b protein_coding protein_coding MGP_C3HHeJ_T0098877.1 MGP_C3HHeJ_G0037071.1 mouse_genomes_project 13 11808879 11808992 - Gm25444 snRNA snRNA MGP_C3HHeJ_T0012819.1 MGP_C3HHeJ_G0010923.1 mouse_genomes_project 13 84745928 84746660 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011262.1 MGP_C3HHeJ_G0009395.1 mouse_genomes_project 13 55596313 55596438 + Gm27834 misc_RNA misc_RNA MGP_C3HHeJ_T0012745.1 MGP_C3HHeJ_G0010849.1 mouse_genomes_project 13 17946121 17947121 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037648.1 MGP_C3HHeJ_G0020608.1 mouse_genomes_project 13 98879633 98886705 - MGP_C3HHeJ_P0037648 Btf3 protein_coding protein_coding MGP_C3HHeJ_T0037649.1 MGP_C3HHeJ_G0020608.1 mouse_genomes_project 13 98879634 98886744 - MGP_C3HHeJ_P0037649 Btf3 protein_coding protein_coding MGP_C3HHeJ_T0037650.1 MGP_C3HHeJ_G0020608.1 mouse_genomes_project 13 98879635 98881253 - Btf3 protein_coding retained_intron MGP_C3HHeJ_T0037651.1 MGP_C3HHeJ_G0020608.1 mouse_genomes_project 13 98879679 98886114 - MGP_C3HHeJ_P0037651 Btf3 protein_coding protein_coding MGP_C3HHeJ_T0037652.1 MGP_C3HHeJ_G0020608.1 mouse_genomes_project 13 98882776 98886734 - Btf3 protein_coding retained_intron MGP_C3HHeJ_T0036120.1 MGP_C3HHeJ_G0020022.1 mouse_genomes_project 13 18719715 18721178 - MGP_C3HHeJ_P0036120 Nkapl protein_coding protein_coding MGP_C3HHeJ_T0035908.1 MGP_C3HHeJ_G0019949.1 mouse_genomes_project 13 944919 956409 - MGP_C3HHeJ_P0035908 Akr1c12 protein_coding protein_coding MGP_C3HHeJ_T0035909.1 MGP_C3HHeJ_G0019949.1 mouse_genomes_project 13 945366 956332 - MGP_C3HHeJ_P0035909 Akr1c12 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012818.1 MGP_C3HHeJ_G0010922.1 mouse_genomes_project 13 84390628 84391593 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037393.1 MGP_C3HHeJ_G0020535.1 mouse_genomes_project 13 81707644 81748714 + MGP_C3HHeJ_P0037393 Mblac2 protein_coding protein_coding MGP_C3HHeJ_T0037924.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008475 116011300 + Mocs2 protein_coding retained_intron MGP_C3HHeJ_T0037925.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008489 116012220 + Mocs2 protein_coding retained_intron MGP_C3HHeJ_T0037926.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008501 116020100 + Mocs2 protein_coding retained_intron MGP_C3HHeJ_T0037927.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008501 116019768 + MGP_C3HHeJ_P0037927 Mocs2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037928.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008505 116020103 + MGP_C3HHeJ_P0037928 Mocs2 protein_coding protein_coding MGP_C3HHeJ_T0037929.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008508 116015754 + Mocs2 protein_coding retained_intron MGP_C3HHeJ_T0037930.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008518 116019638 + MGP_C3HHeJ_P0037930 Mocs2 protein_coding protein_coding MGP_C3HHeJ_T0037931.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116008525 116019817 + MGP_C3HHeJ_P0037931 Mocs2 protein_coding protein_coding MGP_C3HHeJ_T0037932.1 MGP_C3HHeJ_G0020696.1 mouse_genomes_project 13 116009136 116015462 + MGP_C3HHeJ_P0037932 Mocs2 protein_coding protein_coding MGP_C3HHeJ_T0006450.1 MGP_C3HHeJ_G0005350.1 mouse_genomes_project 13 28979925 28987969 - 4930401O12Rik lincRNA lincRNA MGP_C3HHeJ_T0006433.1 MGP_C3HHeJ_G0005338.1 mouse_genomes_project 13 20605844 20610965 + 4933404K08Rik lincRNA lincRNA MGP_C3HHeJ_T0100138.1 MGP_C3HHeJ_G0038332.1 mouse_genomes_project 13 21710226 21710349 - Gm23340 snoRNA snoRNA MGP_C3HHeJ_T0006448.1 MGP_C3HHeJ_G0005348.1 mouse_genomes_project 13 27811168 27817740 + Gm11368 lincRNA lincRNA MGP_C3HHeJ_T0035896.1 MGP_C3HHeJ_G0019944.1 mouse_genomes_project 13 606788 611436 - MGP_C3HHeJ_P0035896 Ucn3 protein_coding protein_coding MGP_C3HHeJ_T0037556.1 MGP_C3HHeJ_G0020576.1 mouse_genomes_project 13 94703153 94707648 - MGP_C3HHeJ_P0037556 Gm9776 protein_coding protein_coding MGP_C3HHeJ_T0035920.1 MGP_C3HHeJ_G0019954.1 mouse_genomes_project 13 1480666 1544683 + MGP_C3HHeJ_P0035920 Gm5444 protein_coding protein_coding MGP_C3HHeJ_T0101728.1 MGP_C3HHeJ_G0039693.1 mouse_genomes_project 13 57364879 57366730 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037070.1 MGP_C3HHeJ_G0020396.1 mouse_genomes_project 13 59633546 59799706 + MGP_C3HHeJ_P0037070 Dapk1 protein_coding protein_coding MGP_C3HHeJ_T0037071.1 MGP_C3HHeJ_G0020396.1 mouse_genomes_project 13 59633810 59799706 + MGP_C3HHeJ_P0037071 Dapk1 protein_coding protein_coding MGP_C3HHeJ_T0036377.1 MGP_C3HHeJ_G0020173.1 mouse_genomes_project 13 29324161 29327361 - MGP_C3HHeJ_P0036377 A530084C06Rik protein_coding protein_coding MGP_C3HHeJ_T0037562.1 MGP_C3HHeJ_G0020580.1 mouse_genomes_project 13 95337439 95375403 + MGP_C3HHeJ_P0037562 Wdr41 protein_coding protein_coding MGP_C3HHeJ_T0037563.1 MGP_C3HHeJ_G0020580.1 mouse_genomes_project 13 95337443 95384255 + MGP_C3HHeJ_P0037563 Wdr41 protein_coding protein_coding MGP_C3HHeJ_T0037564.1 MGP_C3HHeJ_G0020580.1 mouse_genomes_project 13 95337443 95384256 + MGP_C3HHeJ_P0037564 Wdr41 protein_coding protein_coding MGP_C3HHeJ_T0037565.1 MGP_C3HHeJ_G0020580.1 mouse_genomes_project 13 95337533 95375349 + MGP_C3HHeJ_P0037565 Wdr41 protein_coding protein_coding MGP_C3HHeJ_T0037566.1 MGP_C3HHeJ_G0020580.1 mouse_genomes_project 13 95337533 95375349 + MGP_C3HHeJ_P0037566 Wdr41 protein_coding protein_coding MGP_C3HHeJ_T0037567.1 MGP_C3HHeJ_G0020580.1 mouse_genomes_project 13 95337533 95375349 + MGP_C3HHeJ_P0037567 Wdr41 protein_coding protein_coding MGP_C3HHeJ_T0036410.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31734223 31830790 - MGP_C3HHeJ_P0036410 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036411.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31734223 31761607 - MGP_C3HHeJ_P0036411 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036412.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31734223 31761492 - MGP_C3HHeJ_P0036412 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036413.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31734232 31761405 - MGP_C3HHeJ_P0036413 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036414.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31734537 31738366 - Serpinb6a protein_coding processed_transcript MGP_C3HHeJ_T0036415.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31735095 31830790 - MGP_C3HHeJ_P0036415 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036416.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31739232 31756814 - MGP_C3HHeJ_P0036416 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036417.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31739248 31761364 - MGP_C3HHeJ_P0036417 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036418.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31739325 31756787 - MGP_C3HHeJ_P0036418 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036419.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31739930 31761387 - Serpinb6a protein_coding retained_intron MGP_C3HHeJ_T0036420.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31741620 31761386 - MGP_C3HHeJ_P0036420 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036421.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31741692 31830763 - MGP_C3HHeJ_P0036421 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036422.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31751064 31761363 - MGP_C3HHeJ_P0036422 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036423.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31751077 31830782 - MGP_C3HHeJ_P0036423 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036424.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31752521 31830736 - MGP_C3HHeJ_P0036424 Serpinb6a protein_coding protein_coding MGP_C3HHeJ_T0036427.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31800322 31830763 - Serpinb6a protein_coding processed_transcript MGP_C3HHeJ_T0036428.1 MGP_C3HHeJ_G0020192.1 mouse_genomes_project 13 31813436 31830766 - Serpinb6a protein_coding processed_transcript MGP_C3HHeJ_T0037965.1 MGP_C3HHeJ_G0020712.1 mouse_genomes_project 13 120842345 120973045 + MGP_C3HHeJ_P0037965 protein_coding protein_coding MGP_C3HHeJ_T0037966.1 MGP_C3HHeJ_G0020712.1 mouse_genomes_project 13 120842443 120973045 + MGP_C3HHeJ_P0037966 protein_coding protein_coding MGP_C3HHeJ_T0036122.1 MGP_C3HHeJ_G0020024.1 mouse_genomes_project 13 18731198 18731805 - MGP_C3HHeJ_P0036122 Gm10065 protein_coding protein_coding MGP_C3HHeJ_T0012787.1 MGP_C3HHeJ_G0010891.1 mouse_genomes_project 13 31362146 31362493 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036924.1 MGP_C3HHeJ_G0020352.1 mouse_genomes_project 13 54371154 54402941 - MGP_C3HHeJ_P0036924 Fam193b protein_coding protein_coding MGP_C3HHeJ_T0012835.1 MGP_C3HHeJ_G0010939.1 mouse_genomes_project 13 114235754 114236013 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036206.1 MGP_C3HHeJ_G0020091.1 mouse_genomes_project 13 20548411 20549310 - MGP_C3HHeJ_P0036206 Vmn1r188 protein_coding protein_coding MGP_C3HHeJ_T0036962.1 MGP_C3HHeJ_G0020370.1 mouse_genomes_project 13 55418185 55424262 - MGP_C3HHeJ_P0036962 Lect2 protein_coding protein_coding MGP_C3HHeJ_T0036499.1 MGP_C3HHeJ_G0020219.1 mouse_genomes_project 13 36081007 36130018 + MGP_C3HHeJ_P0036499 Dsp protein_coding protein_coding MGP_C3HHeJ_T0036500.1 MGP_C3HHeJ_G0020219.1 mouse_genomes_project 13 36081027 36130018 + MGP_C3HHeJ_P0036500 Dsp protein_coding protein_coding MGP_C3HHeJ_T0036501.1 MGP_C3HHeJ_G0020219.1 mouse_genomes_project 13 36108666 36112533 + Dsp protein_coding processed_transcript MGP_C3HHeJ_T0006563.1 MGP_C3HHeJ_G0005429.1 mouse_genomes_project 13 115786436 115878842 + 4930544M13Rik lincRNA lincRNA MGP_C3HHeJ_T0006564.1 MGP_C3HHeJ_G0005429.1 mouse_genomes_project 13 115786436 115836164 + 4930544M13Rik lincRNA lincRNA MGP_C3HHeJ_T0036627.1 MGP_C3HHeJ_G0020269.1 mouse_genomes_project 13 45370122 45383792 - Dek protein_coding processed_transcript MGP_C3HHeJ_T0036628.1 MGP_C3HHeJ_G0020269.1 mouse_genomes_project 13 45370129 45391528 - MGP_C3HHeJ_P0036628 Dek protein_coding protein_coding MGP_C3HHeJ_T0036629.1 MGP_C3HHeJ_G0020269.1 mouse_genomes_project 13 45373944 45391539 - MGP_C3HHeJ_P0036629 Dek protein_coding protein_coding MGP_C3HHeJ_T0036630.1 MGP_C3HHeJ_G0020269.1 mouse_genomes_project 13 45383508 45391168 - MGP_C3HHeJ_P0036630 Dek protein_coding protein_coding MGP_C3HHeJ_T0036631.1 MGP_C3HHeJ_G0020269.1 mouse_genomes_project 13 45386829 45391492 - Dek protein_coding processed_transcript MGP_C3HHeJ_T0036632.1 MGP_C3HHeJ_G0020269.1 mouse_genomes_project 13 45390723 45391521 - Dek protein_coding processed_transcript MGP_C3HHeJ_T0036271.1 MGP_C3HHeJ_G0020128.1 mouse_genomes_project 13 21764972 21860547 + MGP_C3HHeJ_P0036271 Cmah protein_coding protein_coding MGP_C3HHeJ_T0036272.1 MGP_C3HHeJ_G0020128.1 mouse_genomes_project 13 21784138 21825985 + Cmah protein_coding processed_transcript MGP_C3HHeJ_T0036273.1 MGP_C3HHeJ_G0020128.1 mouse_genomes_project 13 21807427 21825544 + Cmah protein_coding processed_transcript MGP_C3HHeJ_T0036274.1 MGP_C3HHeJ_G0020128.1 mouse_genomes_project 13 21807750 21826954 + Cmah protein_coding processed_transcript MGP_C3HHeJ_T0000857.1 MGP_C3HHeJ_G0000797.1 mouse_genomes_project 13 83776704 83780531 - TEC TEC MGP_C3HHeJ_T0036010.1 MGP_C3HHeJ_G0019980.1 mouse_genomes_project 13 9658088 9658316 + MGP_C3HHeJ_P0036010 Gm2399 protein_coding protein_coding MGP_C3HHeJ_T0037903.1 MGP_C3HHeJ_G0020684.1 mouse_genomes_project 13 114156191 114161638 + MGP_C3HHeJ_P0037903 Cdc20b protein_coding protein_coding MGP_C3HHeJ_T0037904.1 MGP_C3HHeJ_G0020684.1 mouse_genomes_project 13 114156459 114219013 + MGP_C3HHeJ_P0037904 Cdc20b protein_coding protein_coding MGP_C3HHeJ_T0037905.1 MGP_C3HHeJ_G0020684.1 mouse_genomes_project 13 114156459 114219013 + MGP_C3HHeJ_P0037905 Cdc20b protein_coding protein_coding MGP_C3HHeJ_T0037906.1 MGP_C3HHeJ_G0020684.1 mouse_genomes_project 13 114156459 114219013 + MGP_C3HHeJ_P0037906 Cdc20b protein_coding protein_coding MGP_C3HHeJ_T0037907.1 MGP_C3HHeJ_G0020684.1 mouse_genomes_project 13 114156467 114161638 + MGP_C3HHeJ_P0037907 Cdc20b protein_coding protein_coding MGP_C3HHeJ_T0037896.1 MGP_C3HHeJ_G0020678.1 mouse_genomes_project 13 113769682 113851984 + MGP_C3HHeJ_P0037896 Slc38a9 protein_coding protein_coding MGP_C3HHeJ_T0012829.1 MGP_C3HHeJ_G0010933.1 mouse_genomes_project 13 105754716 105755124 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003438.1 MGP_C3HHeJ_G0003135.1 mouse_genomes_project 13 112618741 112626338 - Gm15288 antisense antisense MGP_C3HHeJ_T0006531.1 MGP_C3HHeJ_G0005403.1 mouse_genomes_project 13 83926890 83971423 + 2810049E08Rik lincRNA lincRNA MGP_C3HHeJ_T0037882.1 MGP_C3HHeJ_G0020674.1 mouse_genomes_project 13 113379632 113476791 + MGP_C3HHeJ_P0037882 Ankrd55 protein_coding protein_coding MGP_C3HHeJ_T0037883.1 MGP_C3HHeJ_G0020674.1 mouse_genomes_project 13 113379632 113476791 + MGP_C3HHeJ_P0037883 Ankrd55 protein_coding protein_coding MGP_C3HHeJ_T0037884.1 MGP_C3HHeJ_G0020674.1 mouse_genomes_project 13 113379632 113437014 + MGP_C3HHeJ_P0037884 Ankrd55 protein_coding protein_coding MGP_C3HHeJ_T0037885.1 MGP_C3HHeJ_G0020674.1 mouse_genomes_project 13 113379699 113449617 + MGP_C3HHeJ_P0037885 Ankrd55 protein_coding protein_coding MGP_C3HHeJ_T0037180.1 MGP_C3HHeJ_G0020444.1 mouse_genomes_project 13 66492208 66504260 - MGP_C3HHeJ_P0037180 protein_coding protein_coding MGP_C3HHeJ_T0036250.1 MGP_C3HHeJ_G0020122.1 mouse_genomes_project 13 21248987 21255990 + MGP_C3HHeJ_P0036250 Slc17a1 protein_coding protein_coding MGP_C3HHeJ_T0036251.1 MGP_C3HHeJ_G0020122.1 mouse_genomes_project 13 21249244 21275476 + MGP_C3HHeJ_P0036251 Slc17a1 protein_coding protein_coding MGP_C3HHeJ_T0036252.1 MGP_C3HHeJ_G0020122.1 mouse_genomes_project 13 21251532 21257803 + Slc17a1 protein_coding processed_transcript MGP_C3HHeJ_T0006436.1 MGP_C3HHeJ_G0005340.1 mouse_genomes_project 13 21730921 21731995 - Gm11342 lincRNA lincRNA MGP_C3HHeJ_T0017140.1 MGP_C3HHeJ_G0015020.1 mouse_genomes_project 13 89959374 90068122 + Gm4117 processed_transcript processed_transcript MGP_C3HHeJ_T0017141.1 MGP_C3HHeJ_G0015020.1 mouse_genomes_project 13 89959378 90111704 + Gm4117 processed_transcript processed_transcript MGP_C3HHeJ_T0037332.1 MGP_C3HHeJ_G0020518.1 mouse_genomes_project 13 75716665 75727081 + MGP_C3HHeJ_P0037332 Glrx protein_coding protein_coding MGP_C3HHeJ_T0012764.1 MGP_C3HHeJ_G0010868.1 mouse_genomes_project 13 21713790 21714237 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0002462.1 MGP_C3HHeJ_G0002378.1 mouse_genomes_project 13 16558543 16558603 - MGP_C3HHeJ_P0002462 Trgj3 TR_J_gene TR_J_gene MGP_C3HHeJ_T0036055.1 MGP_C3HHeJ_G0019998.1 mouse_genomes_project 13 14863857 14867550 + MGP_C3HHeJ_P0036055 Mplkip protein_coding protein_coding MGP_C3HHeJ_T0003383.1 MGP_C3HHeJ_G0003106.1 mouse_genomes_project 13 52980485 52984070 - Gm16578 antisense antisense MGP_C3HHeJ_T0003408.1 MGP_C3HHeJ_G0003120.1 mouse_genomes_project 13 78054335 78092932 + antisense antisense MGP_C3HHeJ_T0003409.1 MGP_C3HHeJ_G0003120.1 mouse_genomes_project 13 78056610 78057307 + antisense antisense MGP_C3HHeJ_T0003410.1 MGP_C3HHeJ_G0003120.1 mouse_genomes_project 13 78058568 78091914 + antisense antisense MGP_C3HHeJ_T0003411.1 MGP_C3HHeJ_G0003120.1 mouse_genomes_project 13 78058958 78093624 + antisense antisense MGP_C3HHeJ_T0003412.1 MGP_C3HHeJ_G0003120.1 mouse_genomes_project 13 78059090 78088569 + antisense antisense MGP_C3HHeJ_T0003413.1 MGP_C3HHeJ_G0003120.1 mouse_genomes_project 13 78059324 78133641 + antisense antisense MGP_C3HHeJ_T0011259.1 MGP_C3HHeJ_G0009392.1 mouse_genomes_project 13 53198453 53198714 - Gm22668 misc_RNA misc_RNA MGP_C3HHeJ_T0036121.1 MGP_C3HHeJ_G0020023.1 mouse_genomes_project 13 18731090 18737651 + MGP_C3HHeJ_P0036121 Zkscan4 protein_coding protein_coding MGP_C3HHeJ_T0006498.1 MGP_C3HHeJ_G0005380.1 mouse_genomes_project 13 52128526 52139307 - Gm43262 lincRNA lincRNA MGP_C3HHeJ_T0009880.1 MGP_C3HHeJ_G0008013.1 mouse_genomes_project 13 114160732 114160812 + Mir449b miRNA miRNA MGP_C3HHeJ_T0003359.1 MGP_C3HHeJ_G0003085.1 mouse_genomes_project 13 7250269 7567019 + antisense antisense MGP_C3HHeJ_T0035959.1 MGP_C3HHeJ_G0019962.1 mouse_genomes_project 13 5679517 5686043 + MGP_C3HHeJ_P0035959 Idi1 protein_coding protein_coding MGP_C3HHeJ_T0035960.1 MGP_C3HHeJ_G0019962.1 mouse_genomes_project 13 5679650 5685018 + MGP_C3HHeJ_P0035960 Idi1 protein_coding protein_coding MGP_C3HHeJ_T0003382.1 MGP_C3HHeJ_G0003105.1 mouse_genomes_project 13 47243353 47247714 + Phf2os1 antisense antisense MGP_C3HHeJ_T0098362.1 MGP_C3HHeJ_G0036570.1 mouse_genomes_project 13 41142870 41149878 + Gm15809 sense_intronic sense_intronic MGP_C3HHeJ_T0036601.1 MGP_C3HHeJ_G0020260.1 mouse_genomes_project 13 44537673 44565453 + MGP_C3HHeJ_P0036601 Stmnd1 protein_coding protein_coding MGP_C3HHeJ_T0036259.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21400718 21493919 - MGP_C3HHeJ_P0036259 Lrrc16a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036260.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21400858 21410931 - MGP_C3HHeJ_P0036260 Lrrc16a protein_coding protein_coding MGP_C3HHeJ_T0036261.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21401033 21669396 - MGP_C3HHeJ_P0036261 Lrrc16a protein_coding protein_coding MGP_C3HHeJ_T0036262.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21401435 21669330 - MGP_C3HHeJ_P0036262 Lrrc16a protein_coding protein_coding MGP_C3HHeJ_T0036263.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21419453 21443519 - Lrrc16a protein_coding processed_transcript MGP_C3HHeJ_T0036264.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21448517 21484491 - Lrrc16a protein_coding retained_intron MGP_C3HHeJ_T0036265.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21493894 21498157 - Lrrc16a protein_coding processed_transcript MGP_C3HHeJ_T0036266.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21523313 21669394 - Lrrc16a protein_coding retained_intron MGP_C3HHeJ_T0036267.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21524845 21540765 - Lrrc16a protein_coding processed_transcript MGP_C3HHeJ_T0036268.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21540992 21669100 - MGP_C3HHeJ_P0036268 Lrrc16a protein_coding protein_coding MGP_C3HHeJ_T0036269.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21550293 21592832 - MGP_C3HHeJ_P0036269 Lrrc16a protein_coding protein_coding MGP_C3HHeJ_T0036270.1 MGP_C3HHeJ_G0020127.1 mouse_genomes_project 13 21558957 21627096 - Lrrc16a protein_coding processed_transcript MGP_C3HHeJ_T0036993.1 MGP_C3HHeJ_G0020381.1 mouse_genomes_project 13 57335534 57340705 - MGP_C3HHeJ_P0036993 2210016F16Rik protein_coding protein_coding MGP_C3HHeJ_T0036537.1 MGP_C3HHeJ_G0020237.1 mouse_genomes_project 13 39357178 39357353 - MGP_C3HHeJ_P0036537 Gm17364 protein_coding protein_coding MGP_C3HHeJ_T0037780.1 MGP_C3HHeJ_G0020645.1 mouse_genomes_project 13 104980048 105004010 + MGP_C3HHeJ_P0037780 Trim23 protein_coding protein_coding MGP_C3HHeJ_T0037781.1 MGP_C3HHeJ_G0020645.1 mouse_genomes_project 13 104980090 105004365 + MGP_C3HHeJ_P0037781 Trim23 protein_coding protein_coding MGP_C3HHeJ_T0037782.1 MGP_C3HHeJ_G0020645.1 mouse_genomes_project 13 104980112 104990954 + MGP_C3HHeJ_P0037782 Trim23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037783.1 MGP_C3HHeJ_G0020645.1 mouse_genomes_project 13 104980349 105003048 + MGP_C3HHeJ_P0037783 Trim23 protein_coding protein_coding MGP_C3HHeJ_T0037718.1 MGP_C3HHeJ_G0020633.1 mouse_genomes_project 13 101415489 101423367 - Mrps36 protein_coding processed_transcript MGP_C3HHeJ_T0037719.1 MGP_C3HHeJ_G0020633.1 mouse_genomes_project 13 101415489 101422893 - Mrps36 protein_coding processed_transcript MGP_C3HHeJ_T0037720.1 MGP_C3HHeJ_G0020633.1 mouse_genomes_project 13 101415489 101422910 - Mrps36 protein_coding processed_transcript MGP_C3HHeJ_T0037721.1 MGP_C3HHeJ_G0020633.1 mouse_genomes_project 13 101415489 101423436 - MGP_C3HHeJ_P0037721 Mrps36 protein_coding protein_coding MGP_C3HHeJ_T0037722.1 MGP_C3HHeJ_G0020633.1 mouse_genomes_project 13 101415554 101423347 - MGP_C3HHeJ_P0037722 Mrps36 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037723.1 MGP_C3HHeJ_G0020633.1 mouse_genomes_project 13 101422194 101422892 - Mrps36 protein_coding processed_transcript MGP_C3HHeJ_T0002461.1 MGP_C3HHeJ_G0002377.1 mouse_genomes_project 13 16501082 16501142 + MGP_C3HHeJ_P0002461 Trgj2 TR_J_gene TR_J_gene MGP_C3HHeJ_T0101501.1 MGP_C3HHeJ_G0039491.1 mouse_genomes_project 13 112786784 112789621 - unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0036182.1 MGP_C3HHeJ_G0020067.1 mouse_genomes_project 13 19528783 19529674 + MGP_C3HHeJ_P0036182 Vmn1r194 protein_coding protein_coding MGP_C3HHeJ_T0006561.1 MGP_C3HHeJ_G0005427.1 mouse_genomes_project 13 113058125 113062052 + Gm15322 lincRNA lincRNA MGP_C3HHeJ_T0037145.1 MGP_C3HHeJ_G0020427.1 mouse_genomes_project 13 63757535 63783114 - MGP_C3HHeJ_P0037145 1190003K10Rik protein_coding protein_coding MGP_C3HHeJ_T0101687.1 MGP_C3HHeJ_G0039652.1 mouse_genomes_project 13 19461008 19461773 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101690.1 MGP_C3HHeJ_G0039655.1 mouse_genomes_project 13 19730327 19731220 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101721.1 MGP_C3HHeJ_G0039686.1 mouse_genomes_project 13 31367887 31371037 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036202.1 MGP_C3HHeJ_G0020087.1 mouse_genomes_project 13 20371436 20372750 - MGP_C3HHeJ_P0036202 Vmn1r217 protein_coding protein_coding MGP_C3HHeJ_T0098025.1 MGP_C3HHeJ_G0036237.1 mouse_genomes_project 13 295055 295169 + Gm23084 rRNA rRNA MGP_C3HHeJ_T0036140.1 MGP_C3HHeJ_G0020037.1 mouse_genomes_project 13 18979334 18979941 - MGP_C3HHeJ_P0036140 protein_coding protein_coding MGP_C3HHeJ_T0036521.1 MGP_C3HHeJ_G0020230.1 mouse_genomes_project 13 39080299 39092252 + MGP_C3HHeJ_P0036521 Pak1ip1 protein_coding protein_coding MGP_C3HHeJ_T0036522.1 MGP_C3HHeJ_G0020230.1 mouse_genomes_project 13 39080300 39087854 + Pak1ip1 protein_coding retained_intron MGP_C3HHeJ_T0036523.1 MGP_C3HHeJ_G0020230.1 mouse_genomes_project 13 39080514 39092244 + Pak1ip1 protein_coding retained_intron MGP_C3HHeJ_T0036524.1 MGP_C3HHeJ_G0020230.1 mouse_genomes_project 13 39080536 39087503 + Pak1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0036525.1 MGP_C3HHeJ_G0020230.1 mouse_genomes_project 13 39080542 39092256 + Pak1ip1 protein_coding retained_intron MGP_C3HHeJ_T0037305.1 MGP_C3HHeJ_G0020507.1 mouse_genomes_project 13 73937394 73978601 - MGP_C3HHeJ_P0037305 Exoc3 protein_coding protein_coding MGP_C3HHeJ_T0037843.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 109402102 109812508 + Pde4d protein_coding processed_transcript MGP_C3HHeJ_T0037844.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 109402163 109811523 + Pde4d protein_coding processed_transcript MGP_C3HHeJ_T0037845.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 109597583 110930266 + MGP_C3HHeJ_P0037845 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037846.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 109811545 110930136 + MGP_C3HHeJ_P0037846 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037847.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110078883 110300101 + Pde4d protein_coding processed_transcript MGP_C3HHeJ_T0037848.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110079011 110753241 + Pde4d protein_coding retained_intron MGP_C3HHeJ_T0037849.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110079293 110930179 + MGP_C3HHeJ_P0037849 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037850.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110224657 110930156 + MGP_C3HHeJ_P0037850 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037851.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110410555 110930156 + MGP_C3HHeJ_P0037851 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037852.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110554536 110930136 + MGP_C3HHeJ_P0037852 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037853.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110609486 110930156 + MGP_C3HHeJ_P0037853 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037854.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110665361 110930266 + MGP_C3HHeJ_P0037854 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037855.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110665381 110753238 + Pde4d protein_coding retained_intron MGP_C3HHeJ_T0037856.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110739005 110743396 + Pde4d protein_coding processed_transcript MGP_C3HHeJ_T0037857.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110878974 110930179 + MGP_C3HHeJ_P0037857 Pde4d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037858.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110878978 110932307 + MGP_C3HHeJ_P0037858 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037859.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110898880 110915911 + Pde4d protein_coding retained_intron MGP_C3HHeJ_T0037860.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110901042 110930136 + MGP_C3HHeJ_P0037860 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037861.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110902826 110930156 + MGP_C3HHeJ_P0037861 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0037862.1 MGP_C3HHeJ_G0020666.1 mouse_genomes_project 13 110913028 110927139 + MGP_C3HHeJ_P0037862 Pde4d protein_coding protein_coding MGP_C3HHeJ_T0006434.1 MGP_C3HHeJ_G0005339.1 mouse_genomes_project 13 20783222 20786270 - C230035I16Rik lincRNA lincRNA MGP_C3HHeJ_T0006435.1 MGP_C3HHeJ_G0005339.1 mouse_genomes_project 13 20783354 20786074 - C230035I16Rik lincRNA lincRNA MGP_C3HHeJ_T0006458.1 MGP_C3HHeJ_G0005356.1 mouse_genomes_project 13 29332854 29341653 + Gm11377 lincRNA lincRNA MGP_C3HHeJ_T0006452.1 MGP_C3HHeJ_G0005352.1 mouse_genomes_project 13 29097142 29098318 - Gm11373 lincRNA lincRNA MGP_C3HHeJ_T0036141.1 MGP_C3HHeJ_G0020038.1 mouse_genomes_project 13 18979338 18979749 - MGP_C3HHeJ_P0036141 Hist1h2bg protein_coding protein_coding MGP_C3HHeJ_T0100130.1 MGP_C3HHeJ_G0038324.1 mouse_genomes_project 13 5760999 5761132 - snoRNA snoRNA MGP_C3HHeJ_T0035903.1 MGP_C3HHeJ_G0019947.1 mouse_genomes_project 13 856748 864357 + MGP_C3HHeJ_P0035903 Akr1c13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035904.1 MGP_C3HHeJ_G0019947.1 mouse_genomes_project 13 856751 871236 + MGP_C3HHeJ_P0035904 Akr1c13 protein_coding protein_coding MGP_C3HHeJ_T0036714.1 MGP_C3HHeJ_G0020300.1 mouse_genomes_project 13 50067800 50214664 - MGP_C3HHeJ_P0036714 Shc3 protein_coding protein_coding MGP_C3HHeJ_T0101713.1 MGP_C3HHeJ_G0039678.1 mouse_genomes_project 13 20594366 20596867 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009836.1 MGP_C3HHeJ_G0007969.1 mouse_genomes_project 13 21130074 21130212 - Gm44484 miRNA miRNA MGP_C3HHeJ_T0037222.1 MGP_C3HHeJ_G0020469.1 mouse_genomes_project 13 67321675 67338428 - MGP_C3HHeJ_P0037222 Gm9894 protein_coding protein_coding MGP_C3HHeJ_T0036644.1 MGP_C3HHeJ_G0020274.1 mouse_genomes_project 13 46935306 46983030 - MGP_C3HHeJ_P0036644 Ptpdc1 protein_coding protein_coding MGP_C3HHeJ_T0009832.1 MGP_C3HHeJ_G0007965.1 mouse_genomes_project 13 19218628 19218717 - Gm44456 miRNA miRNA MGP_C3HHeJ_T0036861.1 MGP_C3HHeJ_G0020333.1 mouse_genomes_project 13 53822412 53907896 - MGP_C3HHeJ_P0036861 Uimc1 protein_coding protein_coding MGP_C3HHeJ_T0036862.1 MGP_C3HHeJ_G0020333.1 mouse_genomes_project 13 53822412 53907891 - MGP_C3HHeJ_P0036862 Uimc1 protein_coding protein_coding MGP_C3HHeJ_T0036863.1 MGP_C3HHeJ_G0020333.1 mouse_genomes_project 13 53822727 53907850 - MGP_C3HHeJ_P0036863 Uimc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036864.1 MGP_C3HHeJ_G0020333.1 mouse_genomes_project 13 53822834 53907896 - MGP_C3HHeJ_P0036864 Uimc1 protein_coding protein_coding MGP_C3HHeJ_T0036865.1 MGP_C3HHeJ_G0020333.1 mouse_genomes_project 13 53879324 53907895 - Uimc1 protein_coding retained_intron MGP_C3HHeJ_T0036866.1 MGP_C3HHeJ_G0020333.1 mouse_genomes_project 13 53891990 53900986 - Uimc1 protein_coding retained_intron MGP_C3HHeJ_T0037226.1 MGP_C3HHeJ_G0020471.1 mouse_genomes_project 13 67387424 67388541 + MGP_C3HHeJ_P0037226 protein_coding protein_coding MGP_C3HHeJ_T0101704.1 MGP_C3HHeJ_G0039669.1 mouse_genomes_project 13 20188159 20189061 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012774.1 MGP_C3HHeJ_G0010878.1 mouse_genomes_project 13 24800430 24800771 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009826.1 MGP_C3HHeJ_G0007959.1 mouse_genomes_project 13 5715068 5715171 - Gm22750 miRNA miRNA MGP_C3HHeJ_T0037295.1 MGP_C3HHeJ_G0020502.1 mouse_genomes_project 13 73724262 73755318 + MGP_C3HHeJ_P0037295 Zdhhc11 protein_coding protein_coding MGP_C3HHeJ_T0037941.1 MGP_C3HHeJ_G0020701.1 mouse_genomes_project 13 118144537 118320559 - MGP_C3HHeJ_P0037941 Parp8 protein_coding protein_coding MGP_C3HHeJ_T0036008.1 MGP_C3HHeJ_G0019978.1 mouse_genomes_project 13 9559400 9567825 - MGP_C3HHeJ_P0036008 protein_coding protein_coding MGP_C3HHeJ_T0036597.1 MGP_C3HHeJ_G0020258.1 mouse_genomes_project 13 43751226 44188591 - MGP_C3HHeJ_P0036597 Atxn1 protein_coding protein_coding MGP_C3HHeJ_T0036598.1 MGP_C3HHeJ_G0020258.1 mouse_genomes_project 13 43751226 44188591 - MGP_C3HHeJ_P0036598 Atxn1 protein_coding protein_coding MGP_C3HHeJ_T0036599.1 MGP_C3HHeJ_G0020258.1 mouse_genomes_project 13 43751226 44188591 - MGP_C3HHeJ_P0036599 Atxn1 protein_coding protein_coding MGP_C3HHeJ_T0036306.1 MGP_C3HHeJ_G0020137.1 mouse_genomes_project 13 22403652 22424478 - MGP_C3HHeJ_P0036306 Mrs2 protein_coding protein_coding MGP_C3HHeJ_T0036664.1 MGP_C3HHeJ_G0020280.1 mouse_genomes_project 13 47590056 47603132 - MGP_C3HHeJ_P0036664 Card19 protein_coding protein_coding MGP_C3HHeJ_T0036991.1 MGP_C3HHeJ_G0020379.1 mouse_genomes_project 13 57184987 57227238 - MGP_C3HHeJ_P0036991 Gkap1 protein_coding protein_coding MGP_C3HHeJ_T0003419.1 MGP_C3HHeJ_G0003123.1 mouse_genomes_project 13 92128989 92129602 + 1700119I11Rik antisense antisense MGP_C3HHeJ_T0003420.1 MGP_C3HHeJ_G0003123.1 mouse_genomes_project 13 92129042 92129596 + 1700119I11Rik antisense antisense MGP_C3HHeJ_T0036142.1 MGP_C3HHeJ_G0020039.1 mouse_genomes_project 13 18979993 18980266 + MGP_C3HHeJ_P0036142 protein_coding protein_coding MGP_C3HHeJ_T0006556.1 MGP_C3HHeJ_G0005423.1 mouse_genomes_project 13 112570297 112605392 - Gm15290 lincRNA lincRNA MGP_C3HHeJ_T0100164.1 MGP_C3HHeJ_G0038358.1 mouse_genomes_project 13 86106124 86106184 - Gm22574 snoRNA snoRNA MGP_C3HHeJ_T0036347.1 MGP_C3HHeJ_G0020161.1 mouse_genomes_project 13 25822422 25832389 + MGP_C3HHeJ_P0036347 Prl5a1 protein_coding protein_coding MGP_C3HHeJ_T0012825.1 MGP_C3HHeJ_G0010929.1 mouse_genomes_project 13 94041527 94041856 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037297.1 MGP_C3HHeJ_G0020504.1 mouse_genomes_project 13 73772242 73796655 + Tppp protein_coding processed_transcript MGP_C3HHeJ_T0037298.1 MGP_C3HHeJ_G0020504.1 mouse_genomes_project 13 73772254 73801045 + MGP_C3HHeJ_P0037298 Tppp protein_coding protein_coding MGP_C3HHeJ_T0037299.1 MGP_C3HHeJ_G0020504.1 mouse_genomes_project 13 73772268 73786752 + Tppp protein_coding retained_intron MGP_C3HHeJ_T0037300.1 MGP_C3HHeJ_G0020504.1 mouse_genomes_project 13 73796033 73798895 + Tppp protein_coding processed_transcript MGP_C3HHeJ_T0098909.1 MGP_C3HHeJ_G0037103.1 mouse_genomes_project 13 107652010 107652117 - Gm24527 snRNA snRNA MGP_C3HHeJ_T0036798.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53402249 53449402 + MGP_C3HHeJ_P0036798 Faf2 protein_coding protein_coding MGP_C3HHeJ_T0036799.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53402269 53424916 + MGP_C3HHeJ_P0036799 Faf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036800.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53402289 53446920 + MGP_C3HHeJ_P0036800 Faf2 protein_coding protein_coding MGP_C3HHeJ_T0036801.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53402300 53431693 + MGP_C3HHeJ_P0036801 Faf2 protein_coding protein_coding MGP_C3HHeJ_T0036802.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53402300 53431804 + MGP_C3HHeJ_P0036802 Faf2 protein_coding protein_coding MGP_C3HHeJ_T0036803.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53402303 53439735 + MGP_C3HHeJ_P0036803 Faf2 protein_coding protein_coding MGP_C3HHeJ_T0036804.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53424918 53438897 + MGP_C3HHeJ_P0036804 Faf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036805.1 MGP_C3HHeJ_G0020324.1 mouse_genomes_project 13 53434816 53438922 + Faf2 protein_coding retained_intron MGP_C3HHeJ_T0009856.1 MGP_C3HHeJ_G0007989.1 mouse_genomes_project 13 59314706 59314807 + Gm24999 miRNA miRNA MGP_C3HHeJ_T0036170.1 MGP_C3HHeJ_G0020059.1 mouse_genomes_project 13 19277607 19285115 + MGP_C3HHeJ_P0036170 Pom121l2 protein_coding protein_coding MGP_C3HHeJ_T0036171.1 MGP_C3HHeJ_G0020059.1 mouse_genomes_project 13 19277933 19280893 + MGP_C3HHeJ_P0036171 Pom121l2 protein_coding protein_coding MGP_C3HHeJ_T0035893.1 MGP_C3HHeJ_G0019942.1 mouse_genomes_project 13 542843 554307 - MGP_C3HHeJ_P0035893 Net1 protein_coding protein_coding MGP_C3HHeJ_T0035894.1 MGP_C3HHeJ_G0019942.1 mouse_genomes_project 13 542843 581162 - MGP_C3HHeJ_P0035894 Net1 protein_coding protein_coding MGP_C3HHeJ_T0098878.1 MGP_C3HHeJ_G0037072.1 mouse_genomes_project 13 13184885 13184989 - Gm22628 snRNA snRNA MGP_C3HHeJ_T0037078.1 MGP_C3HHeJ_G0020402.1 mouse_genomes_project 13 59965530 59968001 - MGP_C3HHeJ_P0037078 Ctla2a protein_coding protein_coding MGP_C3HHeJ_T0000849.1 MGP_C3HHeJ_G0000789.1 mouse_genomes_project 13 39949023 39949486 + TEC TEC MGP_C3HHeJ_T0036697.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49068050 49083956 + MGP_C3HHeJ_P0036697 Fbxw17 protein_coding protein_coding MGP_C3HHeJ_T0036698.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49068067 49075843 + MGP_C3HHeJ_P0036698 Fbxw17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036699.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49068072 49080444 + Fbxw17 protein_coding processed_transcript MGP_C3HHeJ_T0036700.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49068072 49083967 + MGP_C3HHeJ_P0036700 Fbxw17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036701.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49068081 49070466 + Fbxw17 protein_coding retained_intron MGP_C3HHeJ_T0036702.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49074041 49077477 + Fbxw17 protein_coding processed_transcript MGP_C3HHeJ_T0036703.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49080156 49082297 + Fbxw17 protein_coding retained_intron MGP_C3HHeJ_T0036704.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49081307 49083963 + Fbxw17 protein_coding retained_intron MGP_C3HHeJ_T0036705.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49081357 49082563 + Fbxw17 protein_coding retained_intron MGP_C3HHeJ_T0036706.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49081543 49082426 + Fbxw17 protein_coding retained_intron MGP_C3HHeJ_T0036707.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49081862 49082540 + Fbxw17 protein_coding retained_intron MGP_C3HHeJ_T0036708.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49081897 49083956 + MGP_C3HHeJ_P0036708 Fbxw17 protein_coding protein_coding MGP_C3HHeJ_T0036709.1 MGP_C3HHeJ_G0020295.1 mouse_genomes_project 13 49082371 49083950 + MGP_C3HHeJ_P0036709 Fbxw17 protein_coding protein_coding MGP_C3HHeJ_T0035910.1 MGP_C3HHeJ_G0019950.1 mouse_genomes_project 13 1124049 1149354 + MGP_C3HHeJ_P0035910 Akr1c6 protein_coding protein_coding MGP_C3HHeJ_T0035911.1 MGP_C3HHeJ_G0019950.1 mouse_genomes_project 13 1124175 1124790 + Akr1c6 protein_coding processed_transcript MGP_C3HHeJ_T0035912.1 MGP_C3HHeJ_G0019950.1 mouse_genomes_project 13 1125889 1141159 + MGP_C3HHeJ_P0035912 Akr1c6 protein_coding protein_coding MGP_C3HHeJ_T0036590.1 MGP_C3HHeJ_G0020254.1 mouse_genomes_project 13 43120302 43203750 - MGP_C3HHeJ_P0036590 Dtnbp1 protein_coding protein_coding MGP_C3HHeJ_T0036591.1 MGP_C3HHeJ_G0020254.1 mouse_genomes_project 13 43120308 43203750 - MGP_C3HHeJ_P0036591 Dtnbp1 protein_coding protein_coding MGP_C3HHeJ_T0006514.1 MGP_C3HHeJ_G0005393.1 mouse_genomes_project 13 69481274 69487423 - Gm26819 lincRNA lincRNA MGP_C3HHeJ_T0009842.1 MGP_C3HHeJ_G0007975.1 mouse_genomes_project 13 40758932 40759019 + Gm23086 miRNA miRNA MGP_C3HHeJ_T0009846.1 MGP_C3HHeJ_G0007979.1 mouse_genomes_project 13 46894355 46894449 - Mirlet7a-1 miRNA miRNA MGP_C3HHeJ_T0100169.1 MGP_C3HHeJ_G0038363.1 mouse_genomes_project 13 100308852 100308983 - Gm24471 snoRNA snoRNA MGP_C3HHeJ_T0006541.1 MGP_C3HHeJ_G0005411.1 mouse_genomes_project 13 98230699 98246343 - 5330416C01Rik lincRNA lincRNA MGP_C3HHeJ_T0006542.1 MGP_C3HHeJ_G0005411.1 mouse_genomes_project 13 98232534 98242043 - 5330416C01Rik lincRNA lincRNA MGP_C3HHeJ_T0006543.1 MGP_C3HHeJ_G0005411.1 mouse_genomes_project 13 98243625 98246311 - 5330416C01Rik lincRNA lincRNA MGP_C3HHeJ_T0036130.1 MGP_C3HHeJ_G0020029.1 mouse_genomes_project 13 18819363 18820307 - MGP_C3HHeJ_P0036130 Olfr1535 protein_coding protein_coding MGP_C3HHeJ_T0100165.1 MGP_C3HHeJ_G0038359.1 mouse_genomes_project 13 90321499 90321633 + Gm24507 snoRNA snoRNA MGP_C3HHeJ_T0036106.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18634873 18651017 - MGP_C3HHeJ_P0036106 protein_coding protein_coding MGP_C3HHeJ_T0036107.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18634873 18651059 - MGP_C3HHeJ_P0036107 protein_coding protein_coding MGP_C3HHeJ_T0036108.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18636465 18642614 - MGP_C3HHeJ_P0036108 protein_coding protein_coding MGP_C3HHeJ_T0036109.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18637151 18650999 - MGP_C3HHeJ_P0036109 protein_coding protein_coding MGP_C3HHeJ_T0036110.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18641082 18651020 - MGP_C3HHeJ_P0036110 protein_coding protein_coding MGP_C3HHeJ_T0036111.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18641792 18644768 - MGP_C3HHeJ_P0036111 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036112.1 MGP_C3HHeJ_G0020019.1 mouse_genomes_project 13 18649856 18650974 - protein_coding processed_transcript MGP_C3HHeJ_T0036933.1 MGP_C3HHeJ_G0020356.1 mouse_genomes_project 13 54467717 54517979 + MGP_C3HHeJ_P0036933 Ddx46 protein_coding protein_coding MGP_C3HHeJ_T0036934.1 MGP_C3HHeJ_G0020356.1 mouse_genomes_project 13 54467717 54517979 + MGP_C3HHeJ_P0036934 Ddx46 protein_coding protein_coding MGP_C3HHeJ_T0036935.1 MGP_C3HHeJ_G0020356.1 mouse_genomes_project 13 54496160 54517987 + MGP_C3HHeJ_P0036935 Ddx46 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012799.1 MGP_C3HHeJ_G0010903.1 mouse_genomes_project 13 63198781 63199374 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037726.1 MGP_C3HHeJ_G0020635.1 mouse_genomes_project 13 101460421 101474121 - MGP_C3HHeJ_P0037726 protein_coding protein_coding MGP_C3HHeJ_T0037727.1 MGP_C3HHeJ_G0020635.1 mouse_genomes_project 13 101460518 101464336 - protein_coding retained_intron MGP_C3HHeJ_T0037728.1 MGP_C3HHeJ_G0020635.1 mouse_genomes_project 13 101461793 101469571 - protein_coding retained_intron MGP_C3HHeJ_T0037729.1 MGP_C3HHeJ_G0020635.1 mouse_genomes_project 13 101462547 101473953 - MGP_C3HHeJ_P0037729 protein_coding protein_coding MGP_C3HHeJ_T0037730.1 MGP_C3HHeJ_G0020635.1 mouse_genomes_project 13 101470581 101473141 - protein_coding retained_intron MGP_C3HHeJ_T0037731.1 MGP_C3HHeJ_G0020635.1 mouse_genomes_project 13 101473074 101474026 - protein_coding retained_intron MGP_C3HHeJ_T0035885.1 MGP_C3HHeJ_G0019937.1 mouse_genomes_project 13 209495 257547 - MGP_C3HHeJ_P0035885 Fam208b protein_coding protein_coding MGP_C3HHeJ_T0035988.1 MGP_C3HHeJ_G0019969.1 mouse_genomes_project 13 6719473 7251635 - MGP_C3HHeJ_P0035988 Chrm3 protein_coding protein_coding MGP_C3HHeJ_T0035989.1 MGP_C3HHeJ_G0019969.1 mouse_genomes_project 13 6721216 6722986 - MGP_C3HHeJ_P0035989 Chrm3 protein_coding protein_coding MGP_C3HHeJ_T0035990.1 MGP_C3HHeJ_G0019969.1 mouse_genomes_project 13 7091043 7251354 - Chrm3 protein_coding processed_transcript MGP_C3HHeJ_T0036712.1 MGP_C3HHeJ_G0020298.1 mouse_genomes_project 13 49795297 49800489 + MGP_C3HHeJ_P0036712 Nxnl2 protein_coding protein_coding MGP_C3HHeJ_T0037388.1 MGP_C3HHeJ_G0020534.1 mouse_genomes_project 13 81669596 81707241 - MGP_C3HHeJ_P0037388 Polr3g protein_coding protein_coding MGP_C3HHeJ_T0037389.1 MGP_C3HHeJ_G0020534.1 mouse_genomes_project 13 81669633 81683595 - Polr3g protein_coding retained_intron MGP_C3HHeJ_T0037390.1 MGP_C3HHeJ_G0020534.1 mouse_genomes_project 13 81690137 81707184 - MGP_C3HHeJ_P0037390 Polr3g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037391.1 MGP_C3HHeJ_G0020534.1 mouse_genomes_project 13 81690574 81707173 - MGP_C3HHeJ_P0037391 Polr3g protein_coding protein_coding MGP_C3HHeJ_T0037392.1 MGP_C3HHeJ_G0020534.1 mouse_genomes_project 13 81695608 81707230 - Polr3g protein_coding retained_intron MGP_C3HHeJ_T0012805.1 MGP_C3HHeJ_G0010909.1 mouse_genomes_project 13 68473271 68474025 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017122.1 MGP_C3HHeJ_G0015010.1 mouse_genomes_project 13 20887688 20894076 - Gm11335 processed_transcript processed_transcript MGP_C3HHeJ_T0036316.1 MGP_C3HHeJ_G0020141.1 mouse_genomes_project 13 24496553 24504306 + MGP_C3HHeJ_P0036316 Prl protein_coding protein_coding MGP_C3HHeJ_T0036222.1 MGP_C3HHeJ_G0020101.1 mouse_genomes_project 13 20915571 20915962 - MGP_C3HHeJ_P0036222 Hist1h4f protein_coding protein_coding MGP_C3HHeJ_T0003401.1 MGP_C3HHeJ_G0003115.1 mouse_genomes_project 13 67365346 67431131 - antisense antisense MGP_C3HHeJ_T0037619.1 MGP_C3HHeJ_G0020598.1 mouse_genomes_project 13 97377828 97405047 + MGP_C3HHeJ_P0037619 Gcnt4 protein_coding protein_coding MGP_C3HHeJ_T0036176.1 MGP_C3HHeJ_G0020061.1 mouse_genomes_project 13 19345330 19346060 - MGP_C3HHeJ_P0036176 Hist1h4i protein_coding protein_coding MGP_C3HHeJ_T0003437.1 MGP_C3HHeJ_G0003134.1 mouse_genomes_project 13 107725187 107727084 + Gm28988 antisense antisense MGP_C3HHeJ_T0037157.1 MGP_C3HHeJ_G0020436.1 mouse_genomes_project 13 64546293 64547610 + MGP_C3HHeJ_P0037157 Gm10775 protein_coding protein_coding MGP_C3HHeJ_T0037325.1 MGP_C3HHeJ_G0020512.1 mouse_genomes_project 13 74133885 74138314 - MGP_C3HHeJ_P0037325 Lrrc14b protein_coding protein_coding MGP_C3HHeJ_T0003369.1 MGP_C3HHeJ_G0003094.1 mouse_genomes_project 13 21344416 21353791 + Gm11339 antisense antisense MGP_C3HHeJ_T0037273.1 MGP_C3HHeJ_G0020493.1 mouse_genomes_project 13 73279781 73322800 + MGP_C3HHeJ_P0037273 Slc6a3 protein_coding protein_coding MGP_C3HHeJ_T0006440.1 MGP_C3HHeJ_G0005344.1 mouse_genomes_project 13 23722911 23753209 - 1700092E19Rik lincRNA lincRNA MGP_C3HHeJ_T0006441.1 MGP_C3HHeJ_G0005344.1 mouse_genomes_project 13 23745620 23753150 - 1700092E19Rik lincRNA lincRNA MGP_C3HHeJ_T0036127.1 MGP_C3HHeJ_G0020027.1 mouse_genomes_project 13 18791628 18792682 - MGP_C3HHeJ_P0036127 protein_coding protein_coding MGP_C3HHeJ_T0036129.1 MGP_C3HHeJ_G0020027.1 mouse_genomes_project 13 18791892 18797441 - MGP_C3HHeJ_P0036129 protein_coding protein_coding MGP_C3HHeJ_T0002460.1 MGP_C3HHeJ_G0002376.1 mouse_genomes_project 13 16430791 16430851 + MGP_C3HHeJ_P0002460 Trgj1 TR_J_gene TR_J_gene MGP_C3HHeJ_T0100139.1 MGP_C3HHeJ_G0038333.1 mouse_genomes_project 13 22216839 22216961 - Gm22358 snoRNA snoRNA MGP_C3HHeJ_T0036600.1 MGP_C3HHeJ_G0020259.1 mouse_genomes_project 13 44436313 44451899 - MGP_C3HHeJ_P0036600 Gm10113 protein_coding protein_coding MGP_C3HHeJ_T0012824.1 MGP_C3HHeJ_G0010928.1 mouse_genomes_project 13 93573188 93574159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006489.1 MGP_C3HHeJ_G0005378.1 mouse_genomes_project 13 50646397 50650053 + Gm26651 lincRNA lincRNA MGP_C3HHeJ_T0035998.1 MGP_C3HHeJ_G0019973.1 mouse_genomes_project 13 9312130 9356212 + MGP_C3HHeJ_P0035998 Heatr1 protein_coding protein_coding MGP_C3HHeJ_T0037470.1 MGP_C3HHeJ_G0020548.1 mouse_genomes_project 13 91102645 91127824 - MGP_C3HHeJ_P0037470 Atp6ap1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037471.1 MGP_C3HHeJ_G0020548.1 mouse_genomes_project 13 91102757 91127809 - MGP_C3HHeJ_P0037471 Atp6ap1l protein_coding protein_coding MGP_C3HHeJ_T0037472.1 MGP_C3HHeJ_G0020548.1 mouse_genomes_project 13 91119208 91127852 - Atp6ap1l protein_coding processed_transcript MGP_C3HHeJ_T0037971.1 MGP_C3HHeJ_G0020716.1 mouse_genomes_project 13 121151031 121176630 - MGP_C3HHeJ_P0037971 Zfp131 protein_coding protein_coding MGP_C3HHeJ_T0037972.1 MGP_C3HHeJ_G0020716.1 mouse_genomes_project 13 121151031 121176630 - MGP_C3HHeJ_P0037972 Zfp131 protein_coding protein_coding MGP_C3HHeJ_T0006544.1 MGP_C3HHeJ_G0005412.1 mouse_genomes_project 13 99004601 99015330 - 2310005E17Rik lincRNA lincRNA MGP_C3HHeJ_T0036162.1 MGP_C3HHeJ_G0020056.1 mouse_genomes_project 13 19112534 19112964 - MGP_C3HHeJ_P0036162 Hist1h4n protein_coding protein_coding MGP_C3HHeJ_T0036137.1 MGP_C3HHeJ_G0020034.1 mouse_genomes_project 13 18939201 18940150 - MGP_C3HHeJ_P0036137 protein_coding protein_coding MGP_C3HHeJ_T0009838.1 MGP_C3HHeJ_G0007971.1 mouse_genomes_project 13 26415430 26415523 - Mir6368 miRNA miRNA MGP_C3HHeJ_T0006439.1 MGP_C3HHeJ_G0005343.1 mouse_genomes_project 13 23353052 23363525 - Gm11351 lincRNA lincRNA MGP_C3HHeJ_T0036079.1 MGP_C3HHeJ_G0020005.1 mouse_genomes_project 13 16827423 16856763 - MGP_C3HHeJ_P0036079 Epdr1 protein_coding protein_coding MGP_C3HHeJ_T0035925.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3342802 3352001 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035926.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3342802 3405524 - MGP_C3HHeJ_P0035926 Pfkp protein_coding protein_coding MGP_C3HHeJ_T0035927.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3344216 3405472 - MGP_C3HHeJ_P0035927 Pfkp protein_coding protein_coding MGP_C3HHeJ_T0035928.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3344502 3350130 - MGP_C3HHeJ_P0035928 Pfkp protein_coding protein_coding MGP_C3HHeJ_T0035929.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3345507 3361795 - MGP_C3HHeJ_P0035929 Pfkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035930.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3345507 3360914 - MGP_C3HHeJ_P0035930 Pfkp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035931.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3348922 3351660 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035932.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3356007 3405472 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035933.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3361329 3365846 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035934.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3365435 3405472 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035935.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3371269 3378808 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035936.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3375816 3405472 - Pfkp protein_coding retained_intron MGP_C3HHeJ_T0035937.1 MGP_C3HHeJ_G0019958.1 mouse_genomes_project 13 3377645 3393394 - MGP_C3HHeJ_P0035937 Pfkp protein_coding protein_coding MGP_C3HHeJ_T0036395.1 MGP_C3HHeJ_G0020183.1 mouse_genomes_project 13 30771061 30784920 + MGP_C3HHeJ_P0036395 Serpinb6b protein_coding protein_coding MGP_C3HHeJ_T0036396.1 MGP_C3HHeJ_G0020183.1 mouse_genomes_project 13 30771296 30784915 + MGP_C3HHeJ_P0036396 Serpinb6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036397.1 MGP_C3HHeJ_G0020183.1 mouse_genomes_project 13 30771355 30784915 + Serpinb6b protein_coding processed_transcript MGP_C3HHeJ_T0037190.1 MGP_C3HHeJ_G0020451.1 mouse_genomes_project 13 66744641 66756715 - MGP_C3HHeJ_P0037190 Zfp457 protein_coding protein_coding MGP_C3HHeJ_T0037191.1 MGP_C3HHeJ_G0020451.1 mouse_genomes_project 13 66755988 66756770 - Zfp457 protein_coding retained_intron MGP_C3HHeJ_T0098903.1 MGP_C3HHeJ_G0037097.1 mouse_genomes_project 13 90151946 90152048 - Gm24498 snRNA snRNA MGP_C3HHeJ_T0037909.1 MGP_C3HHeJ_G0020686.1 mouse_genomes_project 13 114166079 114169745 - MGP_C3HHeJ_P0037909 Gpx8 protein_coding protein_coding MGP_C3HHeJ_T0012784.1 MGP_C3HHeJ_G0010888.1 mouse_genomes_project 13 28966121 28966692 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003434.1 MGP_C3HHeJ_G0003131.1 mouse_genomes_project 13 103531874 103535193 + Gm17160 antisense antisense MGP_C3HHeJ_T0036006.1 MGP_C3HHeJ_G0019976.1 mouse_genomes_project 13 9493799 9555849 + MGP_C3HHeJ_P0036006 Ero1lb protein_coding protein_coding MGP_C3HHeJ_T0037058.1 MGP_C3HHeJ_G0020389.1 mouse_genomes_project 13 58680653 58687362 - MGP_C3HHeJ_P0037058 4921517D22Rik protein_coding protein_coding MGP_C3HHeJ_T0037554.1 MGP_C3HHeJ_G0020575.1 mouse_genomes_project 13 94555283 94635355 - MGP_C3HHeJ_P0037554 Scamp1 protein_coding protein_coding MGP_C3HHeJ_T0037555.1 MGP_C3HHeJ_G0020575.1 mouse_genomes_project 13 94572173 94615403 - MGP_C3HHeJ_P0037555 Scamp1 protein_coding protein_coding MGP_C3HHeJ_T0006550.1 MGP_C3HHeJ_G0005418.1 mouse_genomes_project 13 101538508 101692765 + Gm29502 lincRNA lincRNA MGP_C3HHeJ_T0097860.1 MGP_C3HHeJ_G0036072.1 mouse_genomes_project 13 110667431 110667828 + pseudogene pseudogene MGP_C3HHeJ_T0036249.1 MGP_C3HHeJ_G0020121.1 mouse_genomes_project 13 21223389 21239075 + MGP_C3HHeJ_P0036249 Slc17a3 protein_coding protein_coding MGP_C3HHeJ_T0000867.1 MGP_C3HHeJ_G0000807.1 mouse_genomes_project 13 102170610 102171094 - TEC TEC MGP_C3HHeJ_T0012766.1 MGP_C3HHeJ_G0010870.1 mouse_genomes_project 13 22521980 22522298 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037658.1 MGP_C3HHeJ_G0020613.1 mouse_genomes_project 13 99323164 99422883 - MGP_C3HHeJ_P0037658 Fcho2 protein_coding protein_coding MGP_C3HHeJ_T0037659.1 MGP_C3HHeJ_G0020613.1 mouse_genomes_project 13 99323164 99422883 - MGP_C3HHeJ_P0037659 Fcho2 protein_coding protein_coding MGP_C3HHeJ_T0037660.1 MGP_C3HHeJ_G0020613.1 mouse_genomes_project 13 99351933 99422883 - MGP_C3HHeJ_P0037660 Fcho2 protein_coding protein_coding MGP_C3HHeJ_T0037661.1 MGP_C3HHeJ_G0020613.1 mouse_genomes_project 13 99353887 99422883 - MGP_C3HHeJ_P0037661 Fcho2 protein_coding protein_coding MGP_C3HHeJ_T0036768.1 MGP_C3HHeJ_G0020317.1 mouse_genomes_project 13 53232865 53242917 - MGP_C3HHeJ_P0036768 Thoc3 protein_coding protein_coding MGP_C3HHeJ_T0036769.1 MGP_C3HHeJ_G0020317.1 mouse_genomes_project 13 53237702 53242856 - Thoc3 protein_coding processed_transcript MGP_C3HHeJ_T0036770.1 MGP_C3HHeJ_G0020317.1 mouse_genomes_project 13 53241826 53242894 - Thoc3 protein_coding retained_intron MGP_C3HHeJ_T0037257.1 MGP_C3HHeJ_G0020488.1 mouse_genomes_project 13 72363551 72368908 + MGP_C3HHeJ_P0037257 Irx2 protein_coding protein_coding MGP_C3HHeJ_T0037258.1 MGP_C3HHeJ_G0020488.1 mouse_genomes_project 13 72363702 72365435 + Irx2 protein_coding processed_transcript MGP_C3HHeJ_T0037259.1 MGP_C3HHeJ_G0020488.1 mouse_genomes_project 13 72364534 72365590 + MGP_C3HHeJ_P0037259 Irx2 protein_coding protein_coding MGP_C3HHeJ_T0037260.1 MGP_C3HHeJ_G0020488.1 mouse_genomes_project 13 72366794 72368323 + Irx2 protein_coding retained_intron MGP_C3HHeJ_T0037261.1 MGP_C3HHeJ_G0020488.1 mouse_genomes_project 13 72367306 72368480 + MGP_C3HHeJ_P0037261 Irx2 protein_coding protein_coding MGP_C3HHeJ_T0037320.1 MGP_C3HHeJ_G0020511.1 mouse_genomes_project 13 74123701 74140092 + MGP_C3HHeJ_P0037320 Ccdc127 protein_coding protein_coding MGP_C3HHeJ_T0037321.1 MGP_C3HHeJ_G0020511.1 mouse_genomes_project 13 74123709 74137010 + MGP_C3HHeJ_P0037321 Ccdc127 protein_coding protein_coding MGP_C3HHeJ_T0037322.1 MGP_C3HHeJ_G0020511.1 mouse_genomes_project 13 74123736 74135394 + MGP_C3HHeJ_P0037322 Ccdc127 protein_coding protein_coding MGP_C3HHeJ_T0037323.1 MGP_C3HHeJ_G0020511.1 mouse_genomes_project 13 74123737 74135004 + MGP_C3HHeJ_P0037323 Ccdc127 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037324.1 MGP_C3HHeJ_G0020511.1 mouse_genomes_project 13 74123757 74131349 + MGP_C3HHeJ_P0037324 Ccdc127 protein_coding protein_coding MGP_C3HHeJ_T0036012.1 MGP_C3HHeJ_G0019982.1 mouse_genomes_project 13 9804780 9814929 - MGP_C3HHeJ_P0036012 protein_coding protein_coding MGP_C3HHeJ_T0036764.1 MGP_C3HHeJ_G0020313.1 mouse_genomes_project 13 52798745 52806804 - MGP_C3HHeJ_P0036764 Drd1 protein_coding protein_coding MGP_C3HHeJ_T0037654.1 MGP_C3HHeJ_G0020610.1 mouse_genomes_project 13 99067980 99070634 - MGP_C3HHeJ_P0037654 Gm10320 protein_coding protein_coding MGP_C3HHeJ_T0037210.1 MGP_C3HHeJ_G0020463.1 mouse_genomes_project 13 67044190 67058727 - MGP_C3HHeJ_P0037210 Zfp748 protein_coding protein_coding MGP_C3HHeJ_T0037211.1 MGP_C3HHeJ_G0020463.1 mouse_genomes_project 13 67050533 67058727 - MGP_C3HHeJ_P0037211 Zfp748 protein_coding protein_coding MGP_C3HHeJ_T0003389.1 MGP_C3HHeJ_G0003110.1 mouse_genomes_project 13 57234226 57249562 + Gm26555 antisense antisense MGP_C3HHeJ_T0003390.1 MGP_C3HHeJ_G0003110.1 mouse_genomes_project 13 57234226 57252119 + Gm26555 antisense antisense MGP_C3HHeJ_T0003391.1 MGP_C3HHeJ_G0003110.1 mouse_genomes_project 13 57234234 57252120 + Gm26555 antisense antisense MGP_C3HHeJ_T0006507.1 MGP_C3HHeJ_G0005388.1 mouse_genomes_project 13 58735002 58736605 + 4930528D03Rik lincRNA lincRNA MGP_C3HHeJ_T0006508.1 MGP_C3HHeJ_G0005388.1 mouse_genomes_project 13 58735007 58739627 + 4930528D03Rik lincRNA lincRNA MGP_C3HHeJ_T0006470.1 MGP_C3HHeJ_G0005363.1 mouse_genomes_project 13 35354943 35355940 - Gm29458 lincRNA lincRNA MGP_C3HHeJ_T0006525.1 MGP_C3HHeJ_G0005401.1 mouse_genomes_project 13 83760747 83783302 + lincRNA lincRNA MGP_C3HHeJ_T0006526.1 MGP_C3HHeJ_G0005401.1 mouse_genomes_project 13 83760747 83908342 + lincRNA lincRNA MGP_C3HHeJ_T0006528.1 MGP_C3HHeJ_G0005401.1 mouse_genomes_project 13 83767690 83777666 + lincRNA lincRNA MGP_C3HHeJ_T0006529.1 MGP_C3HHeJ_G0005401.1 mouse_genomes_project 13 83773679 83777517 + lincRNA lincRNA MGP_C3HHeJ_T0006530.1 MGP_C3HHeJ_G0005401.1 mouse_genomes_project 13 83780858 83919873 + lincRNA lincRNA MGP_C3HHeJ_T0036761.1 MGP_C3HHeJ_G0020311.1 mouse_genomes_project 13 52192268 52198418 - MGP_C3HHeJ_P0036761 Msx2 protein_coding protein_coding MGP_C3HHeJ_T0036762.1 MGP_C3HHeJ_G0020311.1 mouse_genomes_project 13 52196849 52198418 - Msx2 protein_coding retained_intron MGP_C3HHeJ_T0000853.1 MGP_C3HHeJ_G0000793.1 mouse_genomes_project 13 66955044 66956875 + TEC TEC MGP_C3HHeJ_T0098899.1 MGP_C3HHeJ_G0037093.1 mouse_genomes_project 13 59959509 59959608 + Gm24594 snRNA snRNA MGP_C3HHeJ_T0006553.1 MGP_C3HHeJ_G0005421.1 mouse_genomes_project 13 108604134 108608911 + 1700006H21Rik lincRNA lincRNA MGP_C3HHeJ_T0006554.1 MGP_C3HHeJ_G0005421.1 mouse_genomes_project 13 108604134 108608922 + 1700006H21Rik lincRNA lincRNA MGP_C3HHeJ_T0011249.1 MGP_C3HHeJ_G0009382.1 mouse_genomes_project 13 6462063 6462311 - Gm23496 misc_RNA misc_RNA MGP_C3HHeJ_T0036311.1 MGP_C3HHeJ_G0020139.1 mouse_genomes_project 13 22647654 22665697 - MGP_C3HHeJ_P0036311 Nrsn1 protein_coding protein_coding MGP_C3HHeJ_T0036312.1 MGP_C3HHeJ_G0020139.1 mouse_genomes_project 13 22647806 22658300 - MGP_C3HHeJ_P0036312 Nrsn1 protein_coding protein_coding MGP_C3HHeJ_T0036313.1 MGP_C3HHeJ_G0020139.1 mouse_genomes_project 13 22649022 22658297 - Nrsn1 protein_coding processed_transcript MGP_C3HHeJ_T0036314.1 MGP_C3HHeJ_G0020139.1 mouse_genomes_project 13 22665649 22666117 - Nrsn1 protein_coding processed_transcript MGP_C3HHeJ_T0036217.1 MGP_C3HHeJ_G0020096.1 mouse_genomes_project 13 20894182 20894655 + MGP_C3HHeJ_P0036217 Hist1h4h protein_coding protein_coding MGP_C3HHeJ_T0009874.1 MGP_C3HHeJ_G0008007.1 mouse_genomes_project 13 94878714 94878828 + Gm25109 miRNA miRNA MGP_C3HHeJ_T0011256.1 MGP_C3HHeJ_G0009389.1 mouse_genomes_project 13 41195599 41195862 - Gm26086 misc_RNA misc_RNA MGP_C3HHeJ_T0003366.1 MGP_C3HHeJ_G0003091.1 mouse_genomes_project 13 19891610 19892416 + antisense antisense MGP_C3HHeJ_T0037151.1 MGP_C3HHeJ_G0020432.1 mouse_genomes_project 13 64307182 64358148 - MGP_C3HHeJ_P0037151 Mfsd14b protein_coding protein_coding MGP_C3HHeJ_T0037152.1 MGP_C3HHeJ_G0020432.1 mouse_genomes_project 13 64307569 64358155 - MGP_C3HHeJ_P0037152 Mfsd14b protein_coding protein_coding MGP_C3HHeJ_T0037153.1 MGP_C3HHeJ_G0020432.1 mouse_genomes_project 13 64309094 64312334 - Mfsd14b protein_coding retained_intron MGP_C3HHeJ_T0037177.1 MGP_C3HHeJ_G0020443.1 mouse_genomes_project 13 66491439 66528007 - protein_coding processed_transcript MGP_C3HHeJ_T0037178.1 MGP_C3HHeJ_G0020443.1 mouse_genomes_project 13 66491439 66538711 - MGP_C3HHeJ_P0037178 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037179.1 MGP_C3HHeJ_G0020443.1 mouse_genomes_project 13 66491440 66528092 - MGP_C3HHeJ_P0037179 protein_coding protein_coding MGP_C3HHeJ_T0037181.1 MGP_C3HHeJ_G0020443.1 mouse_genomes_project 13 66495985 66528092 - protein_coding processed_transcript MGP_C3HHeJ_T0037183.1 MGP_C3HHeJ_G0020443.1 mouse_genomes_project 13 66535570 66538766 - protein_coding processed_transcript MGP_C3HHeJ_T0037251.1 MGP_C3HHeJ_G0020485.1 mouse_genomes_project 13 70425767 70544610 - MGP_C3HHeJ_P0037251 Adamts16 protein_coding protein_coding MGP_C3HHeJ_T0037252.1 MGP_C3HHeJ_G0020485.1 mouse_genomes_project 13 70425775 70544574 - MGP_C3HHeJ_P0037252 Adamts16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037253.1 MGP_C3HHeJ_G0020485.1 mouse_genomes_project 13 70459279 70544610 - MGP_C3HHeJ_P0037253 Adamts16 protein_coding protein_coding MGP_C3HHeJ_T0037254.1 MGP_C3HHeJ_G0020485.1 mouse_genomes_project 13 70537092 70544607 - Adamts16 protein_coding retained_intron MGP_C3HHeJ_T0037711.1 MGP_C3HHeJ_G0020629.1 mouse_genomes_project 13 101289214 101323820 - MGP_C3HHeJ_P0037711 Rad17 protein_coding protein_coding MGP_C3HHeJ_T0037712.1 MGP_C3HHeJ_G0020629.1 mouse_genomes_project 13 101289214 101323820 - MGP_C3HHeJ_P0037712 Rad17 protein_coding protein_coding MGP_C3HHeJ_T0036335.1 MGP_C3HHeJ_G0020152.1 mouse_genomes_project 13 25078940 25085866 - MGP_C3HHeJ_P0036335 Prl8a9 protein_coding protein_coding MGP_C3HHeJ_T0037214.1 MGP_C3HHeJ_G0020466.1 mouse_genomes_project 13 67136280 67158953 - MGP_C3HHeJ_P0037214 Zfp729a protein_coding protein_coding MGP_C3HHeJ_T0036198.1 MGP_C3HHeJ_G0020083.1 mouse_genomes_project 13 20264679 20270771 + MGP_C3HHeJ_P0036198 Vmn1r213 protein_coding protein_coding MGP_C3HHeJ_T0098904.1 MGP_C3HHeJ_G0037098.1 mouse_genomes_project 13 94291863 94291963 + Gm24737 snRNA snRNA MGP_C3HHeJ_T0006521.1 MGP_C3HHeJ_G0005399.1 mouse_genomes_project 13 80902535 81085044 + 9330111N05Rik lincRNA lincRNA MGP_C3HHeJ_T0006522.1 MGP_C3HHeJ_G0005399.1 mouse_genomes_project 13 80903726 81037494 + 9330111N05Rik lincRNA lincRNA MGP_C3HHeJ_T0006523.1 MGP_C3HHeJ_G0005399.1 mouse_genomes_project 13 80921222 81087483 + 9330111N05Rik lincRNA lincRNA MGP_C3HHeJ_T0036880.1 MGP_C3HHeJ_G0020336.1 mouse_genomes_project 13 53962700 53978997 + MGP_C3HHeJ_P0036880 Fgfr4 protein_coding protein_coding MGP_C3HHeJ_T0036881.1 MGP_C3HHeJ_G0020336.1 mouse_genomes_project 13 53965777 53966766 + Fgfr4 protein_coding processed_transcript MGP_C3HHeJ_T0036882.1 MGP_C3HHeJ_G0020336.1 mouse_genomes_project 13 53966227 53967015 + Fgfr4 protein_coding retained_intron MGP_C3HHeJ_T0036092.1 MGP_C3HHeJ_G0020012.1 mouse_genomes_project 13 18306270 18307221 - MGP_C3HHeJ_P0036092 Olfr1370 protein_coding protein_coding MGP_C3HHeJ_T0002450.1 MGP_C3HHeJ_G0002368.1 mouse_genomes_project 13 16565878 16574110 + MGP_C3HHeJ_P0002450 Tcrg-C4 TR_C_gene TR_C_gene MGP_C3HHeJ_T0036494.1 MGP_C3HHeJ_G0020217.1 mouse_genomes_project 13 35934511 35966051 - MGP_C3HHeJ_P0036494 Cage1 protein_coding protein_coding MGP_C3HHeJ_T0036495.1 MGP_C3HHeJ_G0020217.1 mouse_genomes_project 13 35934513 35966065 - MGP_C3HHeJ_P0036495 Cage1 protein_coding protein_coding MGP_C3HHeJ_T0036496.1 MGP_C3HHeJ_G0020217.1 mouse_genomes_project 13 35950112 35966196 - MGP_C3HHeJ_P0036496 Cage1 protein_coding protein_coding MGP_C3HHeJ_T0036497.1 MGP_C3HHeJ_G0020217.1 mouse_genomes_project 13 35952394 35966065 - MGP_C3HHeJ_P0036497 Cage1 protein_coding protein_coding MGP_C3HHeJ_T0037088.1 MGP_C3HHeJ_G0020411.1 mouse_genomes_project 13 60639388 60644885 - MGP_C3HHeJ_P0037088 Cts3 protein_coding protein_coding MGP_C3HHeJ_T0003403.1 MGP_C3HHeJ_G0003117.1 mouse_genomes_project 13 70257442 70260256 + 1700100L14Rik antisense antisense MGP_C3HHeJ_T0003404.1 MGP_C3HHeJ_G0003117.1 mouse_genomes_project 13 70257481 70260251 + 1700100L14Rik antisense antisense MGP_C3HHeJ_T0037373.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81050240 81631707 - MGP_C3HHeJ_P0037373 Adgrv1 protein_coding protein_coding MGP_C3HHeJ_T0037374.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81050240 81322255 - MGP_C3HHeJ_P0037374 Adgrv1 protein_coding protein_coding MGP_C3HHeJ_T0037375.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81050241 81427496 - MGP_C3HHeJ_P0037375 Adgrv1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037376.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81050555 81591946 - MGP_C3HHeJ_P0037376 Adgrv1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037377.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81062125 81321776 - Adgrv1 protein_coding processed_transcript MGP_C3HHeJ_T0037378.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81491072 81571757 - MGP_C3HHeJ_P0037378 Adgrv1 protein_coding protein_coding MGP_C3HHeJ_T0037379.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81491073 81586014 - Adgrv1 protein_coding retained_intron MGP_C3HHeJ_T0037380.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81491073 81519096 - Adgrv1 protein_coding retained_intron MGP_C3HHeJ_T0037381.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81527881 81530979 - Adgrv1 protein_coding retained_intron MGP_C3HHeJ_T0037382.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81556121 81558437 - Adgrv1 protein_coding retained_intron MGP_C3HHeJ_T0037383.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81559896 81631692 - MGP_C3HHeJ_P0037383 Adgrv1 protein_coding protein_coding MGP_C3HHeJ_T0037384.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81578542 81631692 - MGP_C3HHeJ_P0037384 Adgrv1 protein_coding protein_coding MGP_C3HHeJ_T0037385.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81580157 81631694 - MGP_C3HHeJ_P0037385 Adgrv1 protein_coding protein_coding MGP_C3HHeJ_T0037386.1 MGP_C3HHeJ_G0020532.1 mouse_genomes_project 13 81582457 81585239 - Adgrv1 protein_coding retained_intron MGP_C3HHeJ_T0036886.1 MGP_C3HHeJ_G0020340.1 mouse_genomes_project 13 54144441 54149504 - MGP_C3HHeJ_P0036886 Mxd3 protein_coding protein_coding MGP_C3HHeJ_T0036887.1 MGP_C3HHeJ_G0020340.1 mouse_genomes_project 13 54144755 54149479 - Mxd3 protein_coding retained_intron MGP_C3HHeJ_T0036888.1 MGP_C3HHeJ_G0020340.1 mouse_genomes_project 13 54144985 54149098 - Mxd3 protein_coding processed_transcript MGP_C3HHeJ_T0036434.1 MGP_C3HHeJ_G0020196.1 mouse_genomes_project 13 31970948 31979783 - MGP_C3HHeJ_P0036434 Tubb2b protein_coding protein_coding MGP_C3HHeJ_T0009855.1 MGP_C3HHeJ_G0007988.1 mouse_genomes_project 13 57349655 57349763 - Mir7-1 miRNA miRNA MGP_C3HHeJ_T0036365.1 MGP_C3HHeJ_G0020166.1 mouse_genomes_project 13 28087715 28097179 + Agtr1a protein_coding processed_transcript MGP_C3HHeJ_T0036366.1 MGP_C3HHeJ_G0020166.1 mouse_genomes_project 13 28087715 28131028 + MGP_C3HHeJ_P0036366 Agtr1a protein_coding protein_coding MGP_C3HHeJ_T0036318.1 MGP_C3HHeJ_G0020143.1 mouse_genomes_project 13 24539443 24588434 + MGP_C3HHeJ_P0036318 protein_coding protein_coding MGP_C3HHeJ_T0098026.1 MGP_C3HHeJ_G0036238.1 mouse_genomes_project 13 11297976 11298089 - n-R5s52 rRNA rRNA MGP_C3HHeJ_T0036043.1 MGP_C3HHeJ_G0019991.1 mouse_genomes_project 13 11407739 11712682 - MGP_C3HHeJ_P0036043 Hecw1 protein_coding protein_coding MGP_C3HHeJ_T0037908.1 MGP_C3HHeJ_G0020685.1 mouse_genomes_project 13 114162614 114165557 - MGP_C3HHeJ_P0037908 Gm10735 protein_coding protein_coding MGP_C3HHeJ_T0036101.1 MGP_C3HHeJ_G0020016.1 mouse_genomes_project 13 18560673 18567947 + MGP_C3HHeJ_P0036101 Gpx6 protein_coding protein_coding MGP_C3HHeJ_T0036102.1 MGP_C3HHeJ_G0020016.1 mouse_genomes_project 13 18565586 18567951 + Gpx6 protein_coding processed_transcript MGP_C3HHeJ_T0037877.1 MGP_C3HHeJ_G0020673.1 mouse_genomes_project 13 112803265 112866672 - MGP_C3HHeJ_P0037877 Map3k1 protein_coding protein_coding MGP_C3HHeJ_T0037878.1 MGP_C3HHeJ_G0020673.1 mouse_genomes_project 13 112805628 112808206 - Map3k1 protein_coding retained_intron MGP_C3HHeJ_T0037879.1 MGP_C3HHeJ_G0020673.1 mouse_genomes_project 13 112810407 112811534 - Map3k1 protein_coding retained_intron MGP_C3HHeJ_T0037880.1 MGP_C3HHeJ_G0020673.1 mouse_genomes_project 13 112824486 112825431 - Map3k1 protein_coding processed_transcript MGP_C3HHeJ_T0037881.1 MGP_C3HHeJ_G0020673.1 mouse_genomes_project 13 112824861 112866452 - MGP_C3HHeJ_P0037881 Map3k1 protein_coding protein_coding MGP_C3HHeJ_T0036011.1 MGP_C3HHeJ_G0019981.1 mouse_genomes_project 13 9804780 9815735 - MGP_C3HHeJ_P0036011 protein_coding protein_coding MGP_C3HHeJ_T0012754.1 MGP_C3HHeJ_G0010858.1 mouse_genomes_project 13 19560560 19566563 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036381.1 MGP_C3HHeJ_G0020177.1 mouse_genomes_project 13 29589575 30136488 - MGP_C3HHeJ_P0036381 Gmds protein_coding protein_coding MGP_C3HHeJ_T0036382.1 MGP_C3HHeJ_G0020177.1 mouse_genomes_project 13 29883006 30136361 - Gmds protein_coding retained_intron MGP_C3HHeJ_T0036383.1 MGP_C3HHeJ_G0020177.1 mouse_genomes_project 13 29944344 30017924 - Gmds protein_coding processed_transcript MGP_C3HHeJ_T0036384.1 MGP_C3HHeJ_G0020177.1 mouse_genomes_project 13 30015913 30136400 - MGP_C3HHeJ_P0036384 Gmds protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036438.1 MGP_C3HHeJ_G0020199.1 mouse_genomes_project 13 32022815 32189316 - MGP_C3HHeJ_P0036438 Slc22a23 protein_coding protein_coding MGP_C3HHeJ_T0036439.1 MGP_C3HHeJ_G0020199.1 mouse_genomes_project 13 32026525 32037189 - Slc22a23 protein_coding retained_intron MGP_C3HHeJ_T0036440.1 MGP_C3HHeJ_G0020199.1 mouse_genomes_project 13 32047676 32189114 - MGP_C3HHeJ_P0036440 Slc22a23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036441.1 MGP_C3HHeJ_G0020199.1 mouse_genomes_project 13 32067799 32188722 - Slc22a23 protein_coding processed_transcript MGP_C3HHeJ_T0012742.1 MGP_C3HHeJ_G0010846.1 mouse_genomes_project 13 9294965 9295401 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006427.1 MGP_C3HHeJ_G0005333.1 mouse_genomes_project 13 96446 105216 + lincRNA lincRNA MGP_C3HHeJ_T0036964.1 MGP_C3HHeJ_G0020372.1 mouse_genomes_project 13 55595454 55628633 + MGP_C3HHeJ_P0036964 Smad5 protein_coding protein_coding MGP_C3HHeJ_T0036965.1 MGP_C3HHeJ_G0020372.1 mouse_genomes_project 13 55595483 55619484 + Smad5 protein_coding processed_transcript MGP_C3HHeJ_T0036966.1 MGP_C3HHeJ_G0020372.1 mouse_genomes_project 13 55595496 55626216 + MGP_C3HHeJ_P0036966 Smad5 protein_coding protein_coding MGP_C3HHeJ_T0036967.1 MGP_C3HHeJ_G0020372.1 mouse_genomes_project 13 55595510 55619395 + Smad5 protein_coding processed_transcript MGP_C3HHeJ_T0036968.1 MGP_C3HHeJ_G0020372.1 mouse_genomes_project 13 55596108 55626560 + MGP_C3HHeJ_P0036968 Smad5 protein_coding protein_coding MGP_C3HHeJ_T0036969.1 MGP_C3HHeJ_G0020372.1 mouse_genomes_project 13 55619286 55625251 + Smad5 protein_coding processed_transcript MGP_C3HHeJ_T0012779.1 MGP_C3HHeJ_G0010883.1 mouse_genomes_project 13 27870439 27870562 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003360.1 MGP_C3HHeJ_G0003086.1 mouse_genomes_project 13 12609159 12610475 - Gm26645 antisense antisense MGP_C3HHeJ_T0037944.1 MGP_C3HHeJ_G0020704.1 mouse_genomes_project 13 118902927 119290946 + MGP_C3HHeJ_P0037944 Hcn1 protein_coding protein_coding MGP_C3HHeJ_T0037368.1 MGP_C3HHeJ_G0020531.1 mouse_genomes_project 13 80811436 80817699 + Arrdc3 protein_coding retained_intron MGP_C3HHeJ_T0037369.1 MGP_C3HHeJ_G0020531.1 mouse_genomes_project 13 80811462 80824091 + MGP_C3HHeJ_P0037369 Arrdc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037370.1 MGP_C3HHeJ_G0020531.1 mouse_genomes_project 13 80811704 80824091 + MGP_C3HHeJ_P0037370 Arrdc3 protein_coding protein_coding MGP_C3HHeJ_T0037371.1 MGP_C3HHeJ_G0020531.1 mouse_genomes_project 13 80818159 80819308 + Arrdc3 protein_coding retained_intron MGP_C3HHeJ_T0037372.1 MGP_C3HHeJ_G0020531.1 mouse_genomes_project 13 80818573 80819698 + Arrdc3 protein_coding retained_intron MGP_C3HHeJ_T0037223.1 MGP_C3HHeJ_G0020470.1 mouse_genomes_project 13 67344620 67358017 + MGP_C3HHeJ_P0037223 Zfp493 protein_coding protein_coding MGP_C3HHeJ_T0037224.1 MGP_C3HHeJ_G0020470.1 mouse_genomes_project 13 67344620 67355256 + MGP_C3HHeJ_P0037224 Zfp493 protein_coding protein_coding MGP_C3HHeJ_T0037225.1 MGP_C3HHeJ_G0020470.1 mouse_genomes_project 13 67352134 67356098 + Zfp493 protein_coding retained_intron MGP_C3HHeJ_T0036225.1 MGP_C3HHeJ_G0020104.1 mouse_genomes_project 13 20942534 20943094 + MGP_C3HHeJ_P0036225 Hist1h3d protein_coding protein_coding MGP_C3HHeJ_T0036148.1 MGP_C3HHeJ_G0020045.1 mouse_genomes_project 13 19020913 19021206 + MGP_C3HHeJ_P0036148 protein_coding protein_coding MGP_C3HHeJ_T0012750.1 MGP_C3HHeJ_G0010854.1 mouse_genomes_project 13 19196891 19198520 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012759.1 MGP_C3HHeJ_G0010863.1 mouse_genomes_project 13 20629869 20630017 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036319.1 MGP_C3HHeJ_G0020144.1 mouse_genomes_project 13 24688084 24695052 + MGP_C3HHeJ_P0036319 Prl3c1 protein_coding protein_coding MGP_C3HHeJ_T0036320.1 MGP_C3HHeJ_G0020144.1 mouse_genomes_project 13 24690205 24695052 + MGP_C3HHeJ_P0036320 Prl3c1 protein_coding protein_coding MGP_C3HHeJ_T0036321.1 MGP_C3HHeJ_G0020144.1 mouse_genomes_project 13 24690655 24694915 + MGP_C3HHeJ_P0036321 Prl3c1 protein_coding protein_coding MGP_C3HHeJ_T0000862.1 MGP_C3HHeJ_G0000802.1 mouse_genomes_project 13 90852191 90852604 + TEC TEC MGP_C3HHeJ_T0017118.1 MGP_C3HHeJ_G0015006.1 mouse_genomes_project 13 18691738 18697538 + 4930470G03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0035939.1 MGP_C3HHeJ_G0019960.1 mouse_genomes_project 13 4970169 5554343 + MGP_C3HHeJ_P0035939 Adarb2 protein_coding protein_coding MGP_C3HHeJ_T0035940.1 MGP_C3HHeJ_G0019960.1 mouse_genomes_project 13 4970211 5114261 + MGP_C3HHeJ_P0035940 Adarb2 protein_coding protein_coding MGP_C3HHeJ_T0035941.1 MGP_C3HHeJ_G0019960.1 mouse_genomes_project 13 4970216 5557816 + MGP_C3HHeJ_P0035941 Adarb2 protein_coding protein_coding MGP_C3HHeJ_T0035942.1 MGP_C3HHeJ_G0019960.1 mouse_genomes_project 13 5329886 5550215 + MGP_C3HHeJ_P0035942 Adarb2 protein_coding protein_coding MGP_C3HHeJ_T0036336.1 MGP_C3HHeJ_G0020153.1 mouse_genomes_project 13 25095120 25104059 - MGP_C3HHeJ_P0036336 Prl8a1 protein_coding protein_coding MGP_C3HHeJ_T0036337.1 MGP_C3HHeJ_G0020153.1 mouse_genomes_project 13 25095630 25104059 - MGP_C3HHeJ_P0036337 Prl8a1 protein_coding protein_coding MGP_C3HHeJ_T0036536.1 MGP_C3HHeJ_G0020236.1 mouse_genomes_project 13 39333258 39359952 + MGP_C3HHeJ_P0036536 Smim13 protein_coding protein_coding MGP_C3HHeJ_T0036541.1 MGP_C3HHeJ_G0020240.1 mouse_genomes_project 13 39748236 39749064 + MGP_C3HHeJ_P0036541 Gm5082 protein_coding protein_coding MGP_C3HHeJ_T0037197.1 MGP_C3HHeJ_G0020456.1 mouse_genomes_project 13 66884639 66893898 - MGP_C3HHeJ_P0037197 protein_coding protein_coding MGP_C3HHeJ_T0037522.1 MGP_C3HHeJ_G0020564.1 mouse_genomes_project 13 93036622 93080796 - MGP_C3HHeJ_P0037522 Thbs4 protein_coding protein_coding MGP_C3HHeJ_T0037523.1 MGP_C3HHeJ_G0020564.1 mouse_genomes_project 13 93058194 93060010 - Thbs4 protein_coding retained_intron MGP_C3HHeJ_T0012803.1 MGP_C3HHeJ_G0010907.1 mouse_genomes_project 13 67238765 67239551 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036573.1 MGP_C3HHeJ_G0020252.1 mouse_genomes_project 13 41950251 41968347 + MGP_C3HHeJ_P0036573 Cd83 protein_coding protein_coding MGP_C3HHeJ_T0006545.1 MGP_C3HHeJ_G0005413.1 mouse_genomes_project 13 99054275 99055137 - Gm29501 lincRNA lincRNA MGP_C3HHeJ_T0037237.1 MGP_C3HHeJ_G0020479.1 mouse_genomes_project 13 69151169 69190665 - MGP_C3HHeJ_P0037237 Papd7 protein_coding protein_coding MGP_C3HHeJ_T0037238.1 MGP_C3HHeJ_G0020479.1 mouse_genomes_project 13 69151172 69188638 - MGP_C3HHeJ_P0037238 Papd7 protein_coding protein_coding MGP_C3HHeJ_T0011250.1 MGP_C3HHeJ_G0009383.1 mouse_genomes_project 13 9680068 9680366 + Gm23081 misc_RNA misc_RNA MGP_C3HHeJ_T0036944.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54936127 54997275 - MGP_C3HHeJ_P0036944 H2afy protein_coding protein_coding MGP_C3HHeJ_T0036945.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54936127 54997275 - MGP_C3HHeJ_P0036945 H2afy protein_coding protein_coding MGP_C3HHeJ_T0036946.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54936675 54947063 - H2afy protein_coding retained_intron MGP_C3HHeJ_T0036947.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54936868 54952607 - H2afy protein_coding retained_intron MGP_C3HHeJ_T0036948.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54958104 54997174 - H2afy protein_coding processed_transcript MGP_C3HHeJ_T0036949.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54962454 54997084 - H2afy protein_coding retained_intron MGP_C3HHeJ_T0036950.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54965995 54998003 - H2afy protein_coding processed_transcript MGP_C3HHeJ_T0036951.1 MGP_C3HHeJ_G0020362.1 mouse_genomes_project 13 54966006 54996469 - H2afy protein_coding processed_transcript MGP_C3HHeJ_T0036095.1 MGP_C3HHeJ_G0020014.1 mouse_genomes_project 13 18426452 18427421 + Trim27 protein_coding processed_transcript MGP_C3HHeJ_T0036096.1 MGP_C3HHeJ_G0020014.1 mouse_genomes_project 13 18427217 18441505 + MGP_C3HHeJ_P0036096 Trim27 protein_coding protein_coding MGP_C3HHeJ_T0036097.1 MGP_C3HHeJ_G0020014.1 mouse_genomes_project 13 18436849 18437409 + Trim27 protein_coding retained_intron MGP_C3HHeJ_T0036098.1 MGP_C3HHeJ_G0020014.1 mouse_genomes_project 13 18437080 18439464 + MGP_C3HHeJ_P0036098 Trim27 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036615.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45308606 45327255 - MGP_C3HHeJ_P0036615 Tpmt protein_coding protein_coding MGP_C3HHeJ_T0036616.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45308615 45327169 - MGP_C3HHeJ_P0036616 Tpmt protein_coding protein_coding MGP_C3HHeJ_T0036617.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45308804 45328709 - MGP_C3HHeJ_P0036617 Tpmt protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036618.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45312071 45327388 - MGP_C3HHeJ_P0036618 Tpmt protein_coding protein_coding MGP_C3HHeJ_T0036619.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45312090 45328782 - MGP_C3HHeJ_P0036619 Tpmt protein_coding protein_coding MGP_C3HHeJ_T0036620.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45323747 45327189 - Tpmt protein_coding retained_intron MGP_C3HHeJ_T0036621.1 MGP_C3HHeJ_G0020267.1 mouse_genomes_project 13 45324157 45327183 - MGP_C3HHeJ_P0036621 Tpmt protein_coding protein_coding MGP_C3HHeJ_T0012783.1 MGP_C3HHeJ_G0010887.1 mouse_genomes_project 13 28781527 28784156 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036722.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50359870 50465759 - MGP_C3HHeJ_P0036722 Sema4d protein_coding protein_coding MGP_C3HHeJ_T0036723.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50359870 50465685 - MGP_C3HHeJ_P0036723 Sema4d protein_coding protein_coding MGP_C3HHeJ_T0036724.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50359874 50401933 - MGP_C3HHeJ_P0036724 Sema4d protein_coding protein_coding MGP_C3HHeJ_T0036725.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50370118 50375904 - Sema4d protein_coding retained_intron MGP_C3HHeJ_T0036726.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50386645 50417446 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036727.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50386645 50417342 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036728.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388211 50420687 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036729.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388258 50423287 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036730.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388278 50425324 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036731.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388301 50425190 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036732.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388328 50417253 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036733.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388377 50448473 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036734.1 MGP_C3HHeJ_G0020303.1 mouse_genomes_project 13 50388410 50465676 - Sema4d protein_coding processed_transcript MGP_C3HHeJ_T0036757.1 MGP_C3HHeJ_G0020309.1 mouse_genomes_project 13 51819655 52003986 - MGP_C3HHeJ_P0036757 Ror2 protein_coding protein_coding MGP_C3HHeJ_T0036758.1 MGP_C3HHeJ_G0020309.1 mouse_genomes_project 13 51819660 52004561 - MGP_C3HHeJ_P0036758 Ror2 protein_coding protein_coding MGP_C3HHeJ_T0036759.1 MGP_C3HHeJ_G0020309.1 mouse_genomes_project 13 51846361 51994243 - Ror2 protein_coding processed_transcript MGP_C3HHeJ_T0011267.1 MGP_C3HHeJ_G0009400.1 mouse_genomes_project 13 104205987 104206268 - Gm24441 misc_RNA misc_RNA MGP_C3HHeJ_T0035895.1 MGP_C3HHeJ_G0019943.1 mouse_genomes_project 13 587634 598205 + MGP_C3HHeJ_P0035895 Tubal3 protein_coding protein_coding MGP_C3HHeJ_T0037094.1 MGP_C3HHeJ_G0020415.1 mouse_genomes_project 13 62243536 62532265 + MGP_C3HHeJ_P0037094 2010111I01Rik protein_coding protein_coding MGP_C3HHeJ_T0037095.1 MGP_C3HHeJ_G0020415.1 mouse_genomes_project 13 62243769 62534893 + MGP_C3HHeJ_P0037095 2010111I01Rik protein_coding protein_coding MGP_C3HHeJ_T0037096.1 MGP_C3HHeJ_G0020415.1 mouse_genomes_project 13 62515120 62559097 + MGP_C3HHeJ_P0037096 2010111I01Rik protein_coding protein_coding MGP_C3HHeJ_T0037337.1 MGP_C3HHeJ_G0020521.1 mouse_genomes_project 13 75887886 75906011 - MGP_C3HHeJ_P0037337 Rfesd protein_coding protein_coding MGP_C3HHeJ_T0037338.1 MGP_C3HHeJ_G0020521.1 mouse_genomes_project 13 75887886 75905861 - MGP_C3HHeJ_P0037338 Rfesd protein_coding protein_coding MGP_C3HHeJ_T0037339.1 MGP_C3HHeJ_G0020521.1 mouse_genomes_project 13 75887886 75905905 - MGP_C3HHeJ_P0037339 Rfesd protein_coding protein_coding MGP_C3HHeJ_T0012743.1 MGP_C3HHeJ_G0010847.1 mouse_genomes_project 13 14202422 14203380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037230.1 MGP_C3HHeJ_G0020473.1 mouse_genomes_project 13 67434344 67441139 + MGP_C3HHeJ_P0037230 Gm10037 protein_coding protein_coding MGP_C3HHeJ_T0036201.1 MGP_C3HHeJ_G0020086.1 mouse_genomes_project 13 20356755 20357652 + MGP_C3HHeJ_P0036201 Vmn1r216 protein_coding protein_coding MGP_C3HHeJ_T0036211.1 MGP_C3HHeJ_G0020093.1 mouse_genomes_project 13 20776790 20779114 - MGP_C3HHeJ_P0036211 Abt1 protein_coding protein_coding MGP_C3HHeJ_T0036883.1 MGP_C3HHeJ_G0020337.1 mouse_genomes_project 13 54023097 54137604 + MGP_C3HHeJ_P0036883 Nsd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101701.1 MGP_C3HHeJ_G0039666.1 mouse_genomes_project 13 20176803 20177238 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037921.1 MGP_C3HHeJ_G0020694.1 mouse_genomes_project 13 115445388 115553755 - MGP_C3HHeJ_P0037921 Ndufs4 protein_coding protein_coding MGP_C3HHeJ_T0036468.1 MGP_C3HHeJ_G0020208.1 mouse_genomes_project 13 33745687 33758581 - MGP_C3HHeJ_P0036468 Rpp40 protein_coding protein_coding MGP_C3HHeJ_T0036469.1 MGP_C3HHeJ_G0020208.1 mouse_genomes_project 13 33748922 33751087 - MGP_C3HHeJ_P0036469 Rpp40 protein_coding protein_coding MGP_C3HHeJ_T0036470.1 MGP_C3HHeJ_G0020208.1 mouse_genomes_project 13 33748930 33758550 - Rpp40 protein_coding retained_intron MGP_C3HHeJ_T0036471.1 MGP_C3HHeJ_G0020208.1 mouse_genomes_project 13 33748933 33758566 - MGP_C3HHeJ_P0036471 Rpp40 protein_coding protein_coding MGP_C3HHeJ_T0036478.1 MGP_C3HHeJ_G0020213.1 mouse_genomes_project 13 34737556 34932175 - MGP_C3HHeJ_P0036478 F13a1 protein_coding protein_coding MGP_C3HHeJ_T0036479.1 MGP_C3HHeJ_G0020213.1 mouse_genomes_project 13 34737556 34933170 - MGP_C3HHeJ_P0036479 F13a1 protein_coding protein_coding MGP_C3HHeJ_T0036133.1 MGP_C3HHeJ_G0020031.1 mouse_genomes_project 13 18880043 18881028 - MGP_C3HHeJ_P0036133 Olfr1362 protein_coding protein_coding MGP_C3HHeJ_T0036824.1 MGP_C3HHeJ_G0020326.1 mouse_genomes_project 13 53487719 53523553 + MGP_C3HHeJ_P0036824 Cdhr2 protein_coding protein_coding MGP_C3HHeJ_T0036825.1 MGP_C3HHeJ_G0020326.1 mouse_genomes_project 13 53498743 53523549 + MGP_C3HHeJ_P0036825 Cdhr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036118.1 MGP_C3HHeJ_G0020021.1 mouse_genomes_project 13 18693440 18705697 - MGP_C3HHeJ_P0036118 Zscan26 protein_coding protein_coding MGP_C3HHeJ_T0036119.1 MGP_C3HHeJ_G0020021.1 mouse_genomes_project 13 18696137 18705700 - MGP_C3HHeJ_P0036119 Zscan26 protein_coding protein_coding MGP_C3HHeJ_T0037943.1 MGP_C3HHeJ_G0020703.1 mouse_genomes_project 13 118513912 118571943 + MGP_C3HHeJ_P0037943 Emb protein_coding protein_coding MGP_C3HHeJ_T0037814.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107841576 107908640 - MGP_C3HHeJ_P0037814 Kif2a protein_coding protein_coding MGP_C3HHeJ_T0037815.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107843840 107908636 - MGP_C3HHeJ_P0037815 Kif2a protein_coding protein_coding MGP_C3HHeJ_T0037816.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107844432 107908648 - MGP_C3HHeJ_P0037816 Kif2a protein_coding protein_coding MGP_C3HHeJ_T0037817.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107844701 107880803 - MGP_C3HHeJ_P0037817 Kif2a protein_coding protein_coding MGP_C3HHeJ_T0037818.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107846335 107908549 - MGP_C3HHeJ_P0037818 Kif2a protein_coding protein_coding MGP_C3HHeJ_T0037819.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107851443 107860882 - MGP_C3HHeJ_P0037819 Kif2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037820.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107863495 107908271 - MGP_C3HHeJ_P0037820 Kif2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037821.1 MGP_C3HHeJ_G0020658.1 mouse_genomes_project 13 107871090 107877967 - MGP_C3HHeJ_P0037821 Kif2a protein_coding protein_coding MGP_C3HHeJ_T0036199.1 MGP_C3HHeJ_G0020084.1 mouse_genomes_project 13 20292522 20293626 + MGP_C3HHeJ_P0036199 Vmn1r214 protein_coding protein_coding MGP_C3HHeJ_T0036048.1 MGP_C3HHeJ_G0019995.1 mouse_genomes_project 13 12612421 12863486 + MGP_C3HHeJ_P0036048 Gli3 protein_coding protein_coding MGP_C3HHeJ_T0036049.1 MGP_C3HHeJ_G0019995.1 mouse_genomes_project 13 12612437 12789336 + Gli3 protein_coding processed_transcript MGP_C3HHeJ_T0036050.1 MGP_C3HHeJ_G0019995.1 mouse_genomes_project 13 12612909 12811408 + Gli3 protein_coding retained_intron MGP_C3HHeJ_T0036051.1 MGP_C3HHeJ_G0019995.1 mouse_genomes_project 13 12613166 12878435 + MGP_C3HHeJ_P0036051 Gli3 protein_coding protein_coding MGP_C3HHeJ_T0011258.1 MGP_C3HHeJ_G0009391.1 mouse_genomes_project 13 49630365 49630491 + Gm22199 misc_RNA misc_RNA MGP_C3HHeJ_T0012794.1 MGP_C3HHeJ_G0010898.1 mouse_genomes_project 13 53628200 53628456 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009850.1 MGP_C3HHeJ_G0007983.1 mouse_genomes_project 13 54280716 54280782 + Mir6943 miRNA miRNA MGP_C3HHeJ_T0036218.1 MGP_C3HHeJ_G0020097.1 mouse_genomes_project 13 20898279 20898954 + MGP_C3HHeJ_P0036218 Hist1h3g protein_coding protein_coding MGP_C3HHeJ_T0012834.1 MGP_C3HHeJ_G0010938.1 mouse_genomes_project 13 114005603 114006560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098033.1 MGP_C3HHeJ_G0036245.1 mouse_genomes_project 13 117971565 117971656 + Gm23198 rRNA rRNA MGP_C3HHeJ_T0009837.1 MGP_C3HHeJ_G0007970.1 mouse_genomes_project 13 21317904 21318033 - Gm44344 miRNA miRNA MGP_C3HHeJ_T0036243.1 MGP_C3HHeJ_G0020118.1 mouse_genomes_project 13 21143095 21143737 + MGP_C3HHeJ_P0036243 Hist1h1a protein_coding protein_coding MGP_C3HHeJ_T0000858.1 MGP_C3HHeJ_G0000798.1 mouse_genomes_project 13 85432508 85432746 - TEC TEC MGP_C3HHeJ_T0036333.1 MGP_C3HHeJ_G0020151.1 mouse_genomes_project 13 25029146 25035770 - MGP_C3HHeJ_P0036333 Prl8a8 protein_coding protein_coding MGP_C3HHeJ_T0036334.1 MGP_C3HHeJ_G0020151.1 mouse_genomes_project 13 25029250 25035768 - MGP_C3HHeJ_P0036334 Prl8a8 protein_coding protein_coding MGP_C3HHeJ_T0012804.1 MGP_C3HHeJ_G0010908.1 mouse_genomes_project 13 67387453 67388279 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036901.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54301223 54317148 - MGP_C3HHeJ_P0036901 Dbn1 protein_coding protein_coding MGP_C3HHeJ_T0036902.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54301223 54317148 - MGP_C3HHeJ_P0036902 Dbn1 protein_coding protein_coding MGP_C3HHeJ_T0036903.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54301737 54317098 - MGP_C3HHeJ_P0036903 Dbn1 protein_coding protein_coding MGP_C3HHeJ_T0036904.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54302918 54317103 - Dbn1 protein_coding retained_intron MGP_C3HHeJ_T0036905.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54309168 54311175 - Dbn1 protein_coding retained_intron MGP_C3HHeJ_T0036906.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54309190 54311288 - Dbn1 protein_coding retained_intron MGP_C3HHeJ_T0036907.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54310580 54316670 - MGP_C3HHeJ_P0036907 Dbn1 protein_coding protein_coding MGP_C3HHeJ_T0036908.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54310697 54315695 - Dbn1 protein_coding processed_transcript MGP_C3HHeJ_T0036909.1 MGP_C3HHeJ_G0020348.1 mouse_genomes_project 13 54311310 54313000 - Dbn1 protein_coding retained_intron MGP_C3HHeJ_T0036938.1 MGP_C3HHeJ_G0020359.1 mouse_genomes_project 13 54569730 54625479 + MGP_C3HHeJ_P0036938 Pcbd2 protein_coding protein_coding MGP_C3HHeJ_T0036939.1 MGP_C3HHeJ_G0020359.1 mouse_genomes_project 13 54569730 54625477 + MGP_C3HHeJ_P0036939 Pcbd2 protein_coding protein_coding MGP_C3HHeJ_T0037942.1 MGP_C3HHeJ_G0020702.1 mouse_genomes_project 13 118511994 118514363 - MGP_C3HHeJ_P0037942 Gm17509 protein_coding protein_coding MGP_C3HHeJ_T0035897.1 MGP_C3HHeJ_G0019945.1 mouse_genomes_project 13 719091 749939 + MGP_C3HHeJ_P0035897 Akr1c14 protein_coding protein_coding MGP_C3HHeJ_T0035898.1 MGP_C3HHeJ_G0019945.1 mouse_genomes_project 13 729684 749930 + MGP_C3HHeJ_P0035898 Akr1c14 protein_coding protein_coding MGP_C3HHeJ_T0035899.1 MGP_C3HHeJ_G0019945.1 mouse_genomes_project 13 729725 748507 + MGP_C3HHeJ_P0035899 Akr1c14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035900.1 MGP_C3HHeJ_G0019945.1 mouse_genomes_project 13 737779 748513 + Akr1c14 protein_coding processed_transcript MGP_C3HHeJ_T0036890.1 MGP_C3HHeJ_G0020342.1 mouse_genomes_project 13 54191797 54206608 + MGP_C3HHeJ_P0036890 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036891.1 MGP_C3HHeJ_G0020342.1 mouse_genomes_project 13 54192153 54201915 + MGP_C3HHeJ_P0036891 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036892.1 MGP_C3HHeJ_G0020342.1 mouse_genomes_project 13 54201638 54207159 + protein_coding retained_intron MGP_C3HHeJ_T0037198.1 MGP_C3HHeJ_G0020457.1 mouse_genomes_project 13 66900324 66919949 - MGP_C3HHeJ_P0037198 Zfp459 protein_coding protein_coding MGP_C3HHeJ_T0036224.1 MGP_C3HHeJ_G0020103.1 mouse_genomes_project 13 20938923 20939440 - MGP_C3HHeJ_P0036224 Hist1h2bm protein_coding protein_coding MGP_C3HHeJ_T0037803.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107665496 107818797 - MGP_C3HHeJ_P0037803 Ipo11 protein_coding protein_coding MGP_C3HHeJ_T0037804.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107665496 107807061 - MGP_C3HHeJ_P0037804 Ipo11 protein_coding protein_coding MGP_C3HHeJ_T0037805.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107665504 107720714 - MGP_C3HHeJ_P0037805 Ipo11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037806.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107682857 107731547 - Ipo11 protein_coding retained_intron MGP_C3HHeJ_T0037807.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107682962 107709577 - Ipo11 protein_coding retained_intron MGP_C3HHeJ_T0037808.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107706969 107720549 - Ipo11 protein_coding processed_transcript MGP_C3HHeJ_T0037809.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107706971 107709565 - Ipo11 protein_coding processed_transcript MGP_C3HHeJ_T0037810.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107715370 107721750 - Ipo11 protein_coding retained_intron MGP_C3HHeJ_T0037811.1 MGP_C3HHeJ_G0020656.1 mouse_genomes_project 13 107734178 107818784 - Ipo11 protein_coding retained_intron MGP_C3HHeJ_T0037264.1 MGP_C3HHeJ_G0020490.1 mouse_genomes_project 13 73054664 73063329 - MGP_C3HHeJ_P0037264 Ndufs6 protein_coding protein_coding MGP_C3HHeJ_T0037265.1 MGP_C3HHeJ_G0020490.1 mouse_genomes_project 13 73054669 73063239 - MGP_C3HHeJ_P0037265 Ndufs6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036889.1 MGP_C3HHeJ_G0020341.1 mouse_genomes_project 13 54163566 54184380 - MGP_C3HHeJ_P0036889 Lman2 protein_coding protein_coding MGP_C3HHeJ_T0012753.1 MGP_C3HHeJ_G0010857.1 mouse_genomes_project 13 19447812 19449810 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006453.1 MGP_C3HHeJ_G0005353.1 mouse_genomes_project 13 29099460 29101651 - Gm11374 lincRNA lincRNA MGP_C3HHeJ_T0037964.1 MGP_C3HHeJ_G0020711.1 mouse_genomes_project 13 120841665 120842795 - MGP_C3HHeJ_P0037964 protein_coding protein_coding MGP_C3HHeJ_T0011253.1 MGP_C3HHeJ_G0009386.1 mouse_genomes_project 13 13997700 13997988 - Gm26098 misc_RNA misc_RNA MGP_C3HHeJ_T0037301.1 MGP_C3HHeJ_G0020505.1 mouse_genomes_project 13 73801786 73828495 - MGP_C3HHeJ_P0037301 Cep72 protein_coding protein_coding MGP_C3HHeJ_T0037302.1 MGP_C3HHeJ_G0020505.1 mouse_genomes_project 13 73803472 73828472 - MGP_C3HHeJ_P0037302 Cep72 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012769.1 MGP_C3HHeJ_G0010873.1 mouse_genomes_project 13 22993480 22994172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012814.1 MGP_C3HHeJ_G0010918.1 mouse_genomes_project 13 76836881 76837550 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101712.1 MGP_C3HHeJ_G0039677.1 mouse_genomes_project 13 20594365 20596894 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017123.1 MGP_C3HHeJ_G0015011.1 mouse_genomes_project 13 21134893 21136318 - 4930558J22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0037085.1 MGP_C3HHeJ_G0020408.1 mouse_genomes_project 13 60302093 60310695 - MGP_C3HHeJ_P0037085 Cts8 protein_coding protein_coding MGP_C3HHeJ_T0098891.1 MGP_C3HHeJ_G0037085.1 mouse_genomes_project 13 39667121 39667287 - Gm24819 snRNA snRNA MGP_C3HHeJ_T0036339.1 MGP_C3HHeJ_G0020155.1 mouse_genomes_project 13 25154330 25165519 - MGP_C3HHeJ_P0036339 Prl7a1 protein_coding protein_coding MGP_C3HHeJ_T0036340.1 MGP_C3HHeJ_G0020155.1 mouse_genomes_project 13 25154330 25165509 - MGP_C3HHeJ_P0036340 Prl7a1 protein_coding protein_coding MGP_C3HHeJ_T0037241.1 MGP_C3HHeJ_G0020481.1 mouse_genomes_project 13 69236532 69276356 - MGP_C3HHeJ_P0037241 Srd5a1 protein_coding protein_coding MGP_C3HHeJ_T0037242.1 MGP_C3HHeJ_G0020481.1 mouse_genomes_project 13 69257995 69276262 - Srd5a1 protein_coding processed_transcript MGP_C3HHeJ_T0036013.1 MGP_C3HHeJ_G0019983.1 mouse_genomes_project 13 10228087 10238890 + MGP_C3HHeJ_P0036013 protein_coding protein_coding MGP_C3HHeJ_T0037583.1 MGP_C3HHeJ_G0020583.1 mouse_genomes_project 13 95724529 95749200 - MGP_C3HHeJ_P0037583 Aggf1 protein_coding protein_coding MGP_C3HHeJ_T0037584.1 MGP_C3HHeJ_G0020583.1 mouse_genomes_project 13 95727348 95749182 - Aggf1 protein_coding processed_transcript MGP_C3HHeJ_T0037605.1 MGP_C3HHeJ_G0020596.1 mouse_genomes_project 13 96969654 97075476 + MGP_C3HHeJ_P0037605 Col4a3bp protein_coding protein_coding MGP_C3HHeJ_T0037606.1 MGP_C3HHeJ_G0020596.1 mouse_genomes_project 13 96969771 97077631 + MGP_C3HHeJ_P0037606 Col4a3bp protein_coding protein_coding MGP_C3HHeJ_T0037607.1 MGP_C3HHeJ_G0020596.1 mouse_genomes_project 13 96969771 97077631 + MGP_C3HHeJ_P0037607 Col4a3bp protein_coding protein_coding MGP_C3HHeJ_T0036390.1 MGP_C3HHeJ_G0020180.1 mouse_genomes_project 13 30615629 30616022 - MGP_C3HHeJ_P0036390 D930007J09Rik protein_coding protein_coding MGP_C3HHeJ_T0012756.1 MGP_C3HHeJ_G0010860.1 mouse_genomes_project 13 19975975 19977285 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037866.1 MGP_C3HHeJ_G0020670.1 mouse_genomes_project 13 112274448 112277185 + MGP_C3HHeJ_P0037866 Actbl2 protein_coding protein_coding MGP_C3HHeJ_T0036179.1 MGP_C3HHeJ_G0020064.1 mouse_genomes_project 13 19464876 19469783 - MGP_C3HHeJ_P0036179 Vmn1r191 protein_coding protein_coding MGP_C3HHeJ_T0101706.1 MGP_C3HHeJ_G0039671.1 mouse_genomes_project 13 20281622 20281912 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012809.1 MGP_C3HHeJ_G0010913.1 mouse_genomes_project 13 73586483 73586927 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037526.1 MGP_C3HHeJ_G0020567.1 mouse_genomes_project 13 93435252 93480770 - MGP_C3HHeJ_P0037526 Papd4 protein_coding protein_coding MGP_C3HHeJ_T0012775.1 MGP_C3HHeJ_G0010879.1 mouse_genomes_project 13 24807802 24808756 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037666.1 MGP_C3HHeJ_G0020616.1 mouse_genomes_project 13 99798441 99861070 + MGP_C3HHeJ_P0037666 Zfp366 protein_coding protein_coding MGP_C3HHeJ_T0101709.1 MGP_C3HHeJ_G0039674.1 mouse_genomes_project 13 20465840 20466732 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003414.1 MGP_C3HHeJ_G0003121.1 mouse_genomes_project 13 84267423 84270017 - A230107N01Rik antisense antisense MGP_C3HHeJ_T0003415.1 MGP_C3HHeJ_G0003121.1 mouse_genomes_project 13 84268451 84269942 - A230107N01Rik antisense antisense MGP_C3HHeJ_T0017116.1 MGP_C3HHeJ_G0015005.1 mouse_genomes_project 13 12589933 12611849 - Gm6556 processed_transcript antisense MGP_C3HHeJ_T0017117.1 MGP_C3HHeJ_G0015005.1 mouse_genomes_project 13 12610995 12612923 - Gm6556 processed_transcript TEC MGP_C3HHeJ_T0037745.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103501906 104121810 - MGP_C3HHeJ_P0037745 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037746.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103501911 104122078 - MGP_C3HHeJ_P0037746 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037747.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103504211 103877318 - MGP_C3HHeJ_P0037747 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037748.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103504430 103729009 - MGP_C3HHeJ_P0037748 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037749.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103504430 103676580 - MGP_C3HHeJ_P0037749 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037750.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103511397 103676260 - MGP_C3HHeJ_P0037750 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037751.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103523558 103728891 - MGP_C3HHeJ_P0037751 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037752.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103537225 103541484 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0037753.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103548235 103552470 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0037754.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103564597 103877301 - MGP_C3HHeJ_P0037754 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037755.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103567376 103571388 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0037756.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103619927 104122078 - MGP_C3HHeJ_P0037756 Mast4 protein_coding protein_coding MGP_C3HHeJ_T0037757.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103621083 103676549 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0037758.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103798308 104122080 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0037759.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103839450 104122115 - Mast4 protein_coding processed_transcript MGP_C3HHeJ_T0037760.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103850646 104122069 - Mast4 protein_coding processed_transcript MGP_C3HHeJ_T0037761.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 103874648 103877317 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0037762.1 MGP_C3HHeJ_G0020639.1 mouse_genomes_project 13 104120589 104122110 - Mast4 protein_coding retained_intron MGP_C3HHeJ_T0036322.1 MGP_C3HHeJ_G0020145.1 mouse_genomes_project 13 24732145 24739399 + MGP_C3HHeJ_P0036322 Prl3b1 protein_coding protein_coding MGP_C3HHeJ_T0100171.1 MGP_C3HHeJ_G0038365.1 mouse_genomes_project 13 107874452 107874518 - Gm24431 snoRNA snoRNA MGP_C3HHeJ_T0100151.1 MGP_C3HHeJ_G0038345.1 mouse_genomes_project 13 55029993 55030116 + Gm25148 snoRNA snoRNA MGP_C3HHeJ_T0037486.1 MGP_C3HHeJ_G0020553.1 mouse_genomes_project 13 92068459 92078186 - MGP_C3HHeJ_P0037486 Zcchc9 protein_coding protein_coding MGP_C3HHeJ_T0037487.1 MGP_C3HHeJ_G0020553.1 mouse_genomes_project 13 92068467 92078224 - Zcchc9 protein_coding retained_intron MGP_C3HHeJ_T0037488.1 MGP_C3HHeJ_G0020553.1 mouse_genomes_project 13 92070756 92078180 - Zcchc9 protein_coding retained_intron MGP_C3HHeJ_T0037489.1 MGP_C3HHeJ_G0020553.1 mouse_genomes_project 13 92072412 92072923 - Zcchc9 protein_coding retained_intron MGP_C3HHeJ_T0011263.1 MGP_C3HHeJ_G0009396.1 mouse_genomes_project 13 55596462 55596632 + Gm27271 misc_RNA misc_RNA MGP_C3HHeJ_T0000866.1 MGP_C3HHeJ_G0000806.1 mouse_genomes_project 13 101572663 101576079 + TEC TEC MGP_C3HHeJ_T0002463.1 MGP_C3HHeJ_G0002379.1 mouse_genomes_project 13 16563472 16563533 + MGP_C3HHeJ_P0002463 Trgj4 TR_J_gene TR_J_gene MGP_C3HHeJ_T0011266.1 MGP_C3HHeJ_G0009399.1 mouse_genomes_project 13 103007666 103007950 + Gm25808 misc_RNA misc_RNA MGP_C3HHeJ_T0036379.1 MGP_C3HHeJ_G0020175.1 mouse_genomes_project 13 29390456 29396048 + MGP_C3HHeJ_P0036379 Foxf2 protein_coding protein_coding MGP_C3HHeJ_T0037621.1 MGP_C3HHeJ_G0020600.1 mouse_genomes_project 13 97542229 97608987 + MGP_C3HHeJ_P0037621 Fam169a protein_coding protein_coding MGP_C3HHeJ_T0037622.1 MGP_C3HHeJ_G0020600.1 mouse_genomes_project 13 97548114 97608992 + MGP_C3HHeJ_P0037622 Fam169a protein_coding protein_coding MGP_C3HHeJ_T0036183.1 MGP_C3HHeJ_G0020068.1 mouse_genomes_project 13 19556569 19557520 + MGP_C3HHeJ_P0036183 Vmn1r195 protein_coding protein_coding MGP_C3HHeJ_T0037504.1 MGP_C3HHeJ_G0020557.1 mouse_genomes_project 13 92562869 92564071 + MGP_C3HHeJ_P0037504 Gm20379 protein_coding protein_coding MGP_C3HHeJ_T0036564.1 MGP_C3HHeJ_G0020245.1 mouse_genomes_project 13 41300023 41327925 - MGP_C3HHeJ_P0036564 Tbc1d7 protein_coding protein_coding MGP_C3HHeJ_T0036565.1 MGP_C3HHeJ_G0020245.1 mouse_genomes_project 13 41300023 41327925 - MGP_C3HHeJ_P0036565 Tbc1d7 protein_coding protein_coding MGP_C3HHeJ_T0098894.1 MGP_C3HHeJ_G0037088.1 mouse_genomes_project 13 42038659 42038767 + Gm23117 snRNA snRNA MGP_C3HHeJ_T0012767.1 MGP_C3HHeJ_G0010871.1 mouse_genomes_project 13 22863367 22864075 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101126.1 MGP_C3HHeJ_G0039297.1 mouse_genomes_project 13 21991998 22000291 - transcribed_processed_pseudogene retained_intron MGP_C3HHeJ_T0101127.1 MGP_C3HHeJ_G0039297.1 mouse_genomes_project 13 21992727 21993431 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101128.1 MGP_C3HHeJ_G0039297.1 mouse_genomes_project 13 21993171 22000121 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101129.1 MGP_C3HHeJ_G0039297.1 mouse_genomes_project 13 21993268 22000062 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0036955.1 MGP_C3HHeJ_G0020366.1 mouse_genomes_project 13 55232330 55235069 + MGP_C3HHeJ_P0036955 Gm10782 protein_coding protein_coding MGP_C3HHeJ_T0037142.1 MGP_C3HHeJ_G0020424.1 mouse_genomes_project 13 63558378 63580704 - MGP_C3HHeJ_P0037142 Aaed1 protein_coding protein_coding MGP_C3HHeJ_T0009830.1 MGP_C3HHeJ_G0007963.1 mouse_genomes_project 13 19049525 19049666 + Gm44346 miRNA miRNA MGP_C3HHeJ_T0037788.1 MGP_C3HHeJ_G0020649.1 mouse_genomes_project 13 105454374 105643002 - MGP_C3HHeJ_P0037788 Cwc27 protein_coding protein_coding MGP_C3HHeJ_T0037789.1 MGP_C3HHeJ_G0020649.1 mouse_genomes_project 13 105577919 105618666 - Cwc27 protein_coding processed_transcript MGP_C3HHeJ_T0037790.1 MGP_C3HHeJ_G0020649.1 mouse_genomes_project 13 105616530 105618701 - Cwc27 protein_coding processed_transcript MGP_C3HHeJ_T0037792.1 MGP_C3HHeJ_G0020649.1 mouse_genomes_project 13 105633762 105643191 - MGP_C3HHeJ_P0037792 Cwc27 protein_coding protein_coding MGP_C3HHeJ_T0037186.1 MGP_C3HHeJ_G0020447.1 mouse_genomes_project 13 66634853 66662539 + MGP_C3HHeJ_P0037186 protein_coding protein_coding MGP_C3HHeJ_T0036571.1 MGP_C3HHeJ_G0020251.1 mouse_genomes_project 13 41764943 41825874 + MGP_C3HHeJ_P0036571 Rnf182 protein_coding protein_coding MGP_C3HHeJ_T0036572.1 MGP_C3HHeJ_G0020251.1 mouse_genomes_project 13 41765216 41822988 + MGP_C3HHeJ_P0036572 Rnf182 protein_coding protein_coding MGP_C3HHeJ_T0036212.1 MGP_C3HHeJ_G0020094.1 mouse_genomes_project 13 20816359 20825231 - MGP_C3HHeJ_P0036212 Btn1a1 protein_coding protein_coding MGP_C3HHeJ_T0036213.1 MGP_C3HHeJ_G0020094.1 mouse_genomes_project 13 20823103 20825257 - MGP_C3HHeJ_P0036213 Btn1a1 protein_coding protein_coding MGP_C3HHeJ_T0009823.1 MGP_C3HHeJ_G0007956.1 mouse_genomes_project 13 2576447 2576538 - Gm26043 miRNA miRNA MGP_C3HHeJ_T0101720.1 MGP_C3HHeJ_G0039685.1 mouse_genomes_project 13 31328396 31357346 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012748.1 MGP_C3HHeJ_G0010852.1 mouse_genomes_project 13 18759036 18759711 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003364.1 MGP_C3HHeJ_G0003090.1 mouse_genomes_project 13 19312193 19313073 + Gm11290 antisense antisense MGP_C3HHeJ_T0003365.1 MGP_C3HHeJ_G0003090.1 mouse_genomes_project 13 19312193 19313095 + Gm11290 antisense antisense MGP_C3HHeJ_T0036196.1 MGP_C3HHeJ_G0020081.1 mouse_genomes_project 13 20132220 20133210 - MGP_C3HHeJ_P0036196 Vmn1r211 protein_coding protein_coding MGP_C3HHeJ_T0036193.1 MGP_C3HHeJ_G0020078.1 mouse_genomes_project 13 19891281 19892336 - MGP_C3HHeJ_P0036193 Vmn1r208 protein_coding protein_coding MGP_C3HHeJ_T0036994.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57346621 57360113 - MGP_C3HHeJ_P0036994 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0036995.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57346718 57359234 - MGP_C3HHeJ_P0036995 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0036996.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57346718 57354932 - MGP_C3HHeJ_P0036996 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0036997.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57346718 57359272 - MGP_C3HHeJ_P0036997 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0036998.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57346816 57359419 - MGP_C3HHeJ_P0036998 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0036999.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57347439 57351662 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0037000.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57351224 57358912 - MGP_C3HHeJ_P0037000 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0037001.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57351416 57352597 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0037002.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57351479 57353942 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0037003.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57351537 57358873 - MGP_C3HHeJ_P0037003 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0037004.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57351566 57353823 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0037005.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57352041 57359257 - MGP_C3HHeJ_P0037005 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0037006.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57352071 57359277 - MGP_C3HHeJ_P0037006 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0037007.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57352141 57354894 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0037008.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57352146 57354894 - MGP_C3HHeJ_P0037008 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0037009.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57352765 57358880 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0037010.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57353913 57358886 - MGP_C3HHeJ_P0037010 Hnrnpk protein_coding protein_coding MGP_C3HHeJ_T0037011.1 MGP_C3HHeJ_G0020382.1 mouse_genomes_project 13 57355602 57359272 - Hnrnpk protein_coding retained_intron MGP_C3HHeJ_T0101700.1 MGP_C3HHeJ_G0039665.1 mouse_genomes_project 13 20155307 20155599 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003397.1 MGP_C3HHeJ_G0003113.1 mouse_genomes_project 13 66497554 67311642 + antisense antisense MGP_C3HHeJ_T0003399.1 MGP_C3HHeJ_G0003113.1 mouse_genomes_project 13 67270031 67313763 + antisense antisense MGP_C3HHeJ_T0003400.1 MGP_C3HHeJ_G0003113.1 mouse_genomes_project 13 67297978 67314888 + antisense antisense MGP_C3HHeJ_T0098030.1 MGP_C3HHeJ_G0036242.1 mouse_genomes_project 13 97348931 97349046 + Gm27792 rRNA rRNA MGP_C3HHeJ_T0037527.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93583149 93671950 + MGP_C3HHeJ_P0037527 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037528.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93583494 93652456 + MGP_C3HHeJ_P0037528 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037529.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93583887 93645946 + MGP_C3HHeJ_P0037529 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037530.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584192 93688862 + MGP_C3HHeJ_P0037530 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037531.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584496 93687451 + MGP_C3HHeJ_P0037531 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037532.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584496 93687451 + MGP_C3HHeJ_P0037532 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037533.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584552 93688971 + MGP_C3HHeJ_P0037533 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037534.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584577 93651728 + MGP_C3HHeJ_P0037534 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037535.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584671 93687487 + MGP_C3HHeJ_P0037535 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037536.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93584671 93687487 + MGP_C3HHeJ_P0037536 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037537.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93587429 93689310 + MGP_C3HHeJ_P0037537 Homer1 protein_coding protein_coding MGP_C3HHeJ_T0037538.1 MGP_C3HHeJ_G0020568.1 mouse_genomes_project 13 93668589 93687410 + MGP_C3HHeJ_P0037538 Homer1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101707.1 MGP_C3HHeJ_G0039672.1 mouse_genomes_project 13 20315315 20317185 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037059.1 MGP_C3HHeJ_G0020390.1 mouse_genomes_project 13 58727216 58733044 - MGP_C3HHeJ_P0037059 Spata31d1d protein_coding protein_coding MGP_C3HHeJ_T0006568.1 MGP_C3HHeJ_G0005431.1 mouse_genomes_project 13 121066190 121067698 + 1700074H08Rik lincRNA lincRNA MGP_C3HHeJ_T0101711.1 MGP_C3HHeJ_G0039676.1 mouse_genomes_project 13 20547073 20547534 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036231.1 MGP_C3HHeJ_G0020108.1 mouse_genomes_project 13 21052553 21061870 + MGP_C3HHeJ_P0036231 Hist1h2bc protein_coding protein_coding MGP_C3HHeJ_T0036685.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48090157 48137837 + MGP_C3HHeJ_P0036685 Iars protein_coding protein_coding MGP_C3HHeJ_T0036686.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48090187 48137837 + MGP_C3HHeJ_P0036686 Iars protein_coding protein_coding MGP_C3HHeJ_T0036687.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48090248 48097842 + MGP_C3HHeJ_P0036687 Iars protein_coding protein_coding MGP_C3HHeJ_T0036688.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48096921 48137311 + MGP_C3HHeJ_P0036688 Iars protein_coding protein_coding MGP_C3HHeJ_T0036689.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48109572 48115549 + MGP_C3HHeJ_P0036689 Iars protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036690.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48110323 48119512 + Iars protein_coding retained_intron MGP_C3HHeJ_T0036691.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48111986 48118886 + Iars protein_coding retained_intron MGP_C3HHeJ_T0036692.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48121585 48126844 + Iars protein_coding retained_intron MGP_C3HHeJ_T0036693.1 MGP_C3HHeJ_G0020291.1 mouse_genomes_project 13 48125848 48126826 + Iars protein_coding retained_intron MGP_C3HHeJ_T0037256.1 MGP_C3HHeJ_G0020487.1 mouse_genomes_project 13 71682786 71689200 - MGP_C3HHeJ_P0037256 Irx1 protein_coding protein_coding MGP_C3HHeJ_T0012782.1 MGP_C3HHeJ_G0010886.1 mouse_genomes_project 13 28491645 28491905 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036009.1 MGP_C3HHeJ_G0019979.1 mouse_genomes_project 13 9657988 10669650 + MGP_C3HHeJ_P0036009 Nid1 protein_coding protein_coding MGP_C3HHeJ_T0036244.1 MGP_C3HHeJ_G0020119.1 mouse_genomes_project 13 21161781 21170671 + MGP_C3HHeJ_P0036244 Trim38 protein_coding protein_coding MGP_C3HHeJ_T0036542.1 MGP_C3HHeJ_G0020241.1 mouse_genomes_project 13 39858146 39945091 - MGP_C3HHeJ_P0036542 Adtrp protein_coding protein_coding MGP_C3HHeJ_T0036543.1 MGP_C3HHeJ_G0020241.1 mouse_genomes_project 13 39859131 39945287 - MGP_C3HHeJ_P0036543 Adtrp protein_coding protein_coding MGP_C3HHeJ_T0036544.1 MGP_C3HHeJ_G0020241.1 mouse_genomes_project 13 39859588 39945219 - MGP_C3HHeJ_P0036544 Adtrp protein_coding protein_coding MGP_C3HHeJ_T0036545.1 MGP_C3HHeJ_G0020241.1 mouse_genomes_project 13 39872511 39923833 - MGP_C3HHeJ_P0036545 Adtrp protein_coding protein_coding MGP_C3HHeJ_T0037469.1 MGP_C3HHeJ_G0020547.1 mouse_genomes_project 13 90815144 90815510 + MGP_C3HHeJ_P0037469 Gm21726 protein_coding protein_coding MGP_C3HHeJ_T0009864.1 MGP_C3HHeJ_G0007997.1 mouse_genomes_project 13 70805121 70805242 + Mir466f-4 miRNA miRNA MGP_C3HHeJ_T0009844.1 MGP_C3HHeJ_G0007977.1 mouse_genomes_project 13 46894001 46894098 + Gm24111 miRNA miRNA MGP_C3HHeJ_T0036466.1 MGP_C3HHeJ_G0020207.1 mouse_genomes_project 13 33505890 33727114 + MGP_C3HHeJ_P0036466 Cdyl protein_coding protein_coding MGP_C3HHeJ_T0036467.1 MGP_C3HHeJ_G0020207.1 mouse_genomes_project 13 33587237 33727108 + MGP_C3HHeJ_P0036467 Cdyl protein_coding protein_coding MGP_C3HHeJ_T0097858.1 MGP_C3HHeJ_G0036070.1 mouse_genomes_project 13 89790791 89792160 - pseudogene pseudogene MGP_C3HHeJ_T0037249.1 MGP_C3HHeJ_G0020483.1 mouse_genomes_project 13 69481242 69487423 + MGP_C3HHeJ_P0037249 Med10 protein_coding protein_coding MGP_C3HHeJ_T0036346.1 MGP_C3HHeJ_G0020160.1 mouse_genomes_project 13 25712835 25720172 + MGP_C3HHeJ_P0036346 Prl4a1 protein_coding protein_coding MGP_C3HHeJ_T0036195.1 MGP_C3HHeJ_G0020080.1 mouse_genomes_project 13 20106952 20107873 - MGP_C3HHeJ_P0036195 Vmn1r210 protein_coding protein_coding MGP_C3HHeJ_T0009877.1 MGP_C3HHeJ_G0008010.1 mouse_genomes_project 13 110289811 110289892 + Mir582 miRNA miRNA MGP_C3HHeJ_T0036007.1 MGP_C3HHeJ_G0019977.1 mouse_genomes_project 13 9493966 9540604 + MGP_C3HHeJ_P0036007 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0036942.1 MGP_C3HHeJ_G0020361.1 mouse_genomes_project 13 54673767 54681481 - MGP_C3HHeJ_P0036942 Pitx1 protein_coding protein_coding MGP_C3HHeJ_T0036943.1 MGP_C3HHeJ_G0020361.1 mouse_genomes_project 13 54678534 54686936 - MGP_C3HHeJ_P0036943 Pitx1 protein_coding protein_coding MGP_C3HHeJ_T0037162.1 MGP_C3HHeJ_G0020438.1 mouse_genomes_project 13 66321637 66326657 - MGP_C3HHeJ_P0037162 Uqcrb protein_coding protein_coding MGP_C3HHeJ_T0037163.1 MGP_C3HHeJ_G0020438.1 mouse_genomes_project 13 66322306 66324048 - Uqcrb protein_coding processed_transcript MGP_C3HHeJ_T0100133.1 MGP_C3HHeJ_G0038327.1 mouse_genomes_project 13 8303499 8303619 - Gm25496 snoRNA snoRNA MGP_C3HHeJ_T0000848.1 MGP_C3HHeJ_G0000788.1 mouse_genomes_project 13 38800344 38802982 - TEC TEC MGP_C3HHeJ_T0037662.1 MGP_C3HHeJ_G0020614.1 mouse_genomes_project 13 99452697 99536574 - MGP_C3HHeJ_P0037662 Tnpo1 protein_coding protein_coding MGP_C3HHeJ_T0037663.1 MGP_C3HHeJ_G0020614.1 mouse_genomes_project 13 99457474 99500925 - MGP_C3HHeJ_P0037663 Tnpo1 protein_coding protein_coding MGP_C3HHeJ_T0037664.1 MGP_C3HHeJ_G0020614.1 mouse_genomes_project 13 99485566 99500941 - MGP_C3HHeJ_P0037664 Tnpo1 protein_coding protein_coding MGP_C3HHeJ_T0037235.1 MGP_C3HHeJ_G0020477.1 mouse_genomes_project 13 68247729 68264336 + MGP_C3HHeJ_P0037235 1700001L19Rik protein_coding protein_coding MGP_C3HHeJ_T0009873.1 MGP_C3HHeJ_G0008006.1 mouse_genomes_project 13 94256235 94256360 - Gm25534 miRNA miRNA MGP_C3HHeJ_T0036123.1 MGP_C3HHeJ_G0020025.1 mouse_genomes_project 13 18753759 18756090 - MGP_C3HHeJ_P0036123 Gm11273 protein_coding protein_coding MGP_C3HHeJ_T0009849.1 MGP_C3HHeJ_G0007982.1 mouse_genomes_project 13 53357176 53357313 + Gm24195 miRNA miRNA MGP_C3HHeJ_T0003398.1 MGP_C3HHeJ_G0003114.1 mouse_genomes_project 13 66824863 66883611 + antisense antisense MGP_C3HHeJ_T0037969.1 MGP_C3HHeJ_G0020715.1 mouse_genomes_project 13 121096251 121143583 - MGP_C3HHeJ_P0037969 Nim1k protein_coding protein_coding MGP_C3HHeJ_T0037970.1 MGP_C3HHeJ_G0020715.1 mouse_genomes_project 13 121109656 121125542 - MGP_C3HHeJ_P0037970 Nim1k protein_coding protein_coding MGP_C3HHeJ_T0101723.1 MGP_C3HHeJ_G0039688.1 mouse_genomes_project 13 31510802 31513854 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037432.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85238279 85313661 - MGP_C3HHeJ_P0037432 Rasa1 protein_coding protein_coding MGP_C3HHeJ_T0037433.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85239314 85241855 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037434.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85239550 85245215 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037435.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85244883 85250219 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037436.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85247732 85249530 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037437.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85252207 85254581 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037438.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85252797 85253986 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037439.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85261719 85270767 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037440.1 MGP_C3HHeJ_G0020540.1 mouse_genomes_project 13 85267818 85274615 - Rasa1 protein_coding retained_intron MGP_C3HHeJ_T0037544.1 MGP_C3HHeJ_G0020572.1 mouse_genomes_project 13 93984898 94078037 + MGP_C3HHeJ_P0037544 Dmgdh protein_coding protein_coding MGP_C3HHeJ_T0037545.1 MGP_C3HHeJ_G0020572.1 mouse_genomes_project 13 94023497 94024118 + Dmgdh protein_coding processed_transcript MGP_C3HHeJ_T0036172.1 MGP_C3HHeJ_G0020060.1 mouse_genomes_project 13 19298567 19306136 - MGP_C3HHeJ_P0036172 Prss16 protein_coding protein_coding MGP_C3HHeJ_T0036173.1 MGP_C3HHeJ_G0020060.1 mouse_genomes_project 13 19298951 19301614 - Prss16 protein_coding processed_transcript MGP_C3HHeJ_T0036174.1 MGP_C3HHeJ_G0020060.1 mouse_genomes_project 13 19299317 19302810 - Prss16 protein_coding processed_transcript MGP_C3HHeJ_T0036175.1 MGP_C3HHeJ_G0020060.1 mouse_genomes_project 13 19303626 19306137 - Prss16 protein_coding processed_transcript MGP_C3HHeJ_T0012815.1 MGP_C3HHeJ_G0010919.1 mouse_genomes_project 13 78229100 78231887 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036345.1 MGP_C3HHeJ_G0020159.1 mouse_genomes_project 13 25357089 25364165 + MGP_C3HHeJ_P0036345 Prl2a1 protein_coding protein_coding MGP_C3HHeJ_T0037394.1 MGP_C3HHeJ_G0020536.1 mouse_genomes_project 13 81778709 81792556 + MGP_C3HHeJ_P0037394 Cetn3 protein_coding protein_coding MGP_C3HHeJ_T0100166.1 MGP_C3HHeJ_G0038360.1 mouse_genomes_project 13 91987388 91987516 + Gm22778 snoRNA snoRNA MGP_C3HHeJ_T0006505.1 MGP_C3HHeJ_G0005386.1 mouse_genomes_project 13 55089426 55111097 - 4930550C17Rik lincRNA lincRNA MGP_C3HHeJ_T0036987.1 MGP_C3HHeJ_G0020377.1 mouse_genomes_project 13 57105804 57114546 + MGP_C3HHeJ_P0036987 Idnk protein_coding protein_coding MGP_C3HHeJ_T0036988.1 MGP_C3HHeJ_G0020377.1 mouse_genomes_project 13 57105804 57114546 + MGP_C3HHeJ_P0036988 Idnk protein_coding protein_coding MGP_C3HHeJ_T0101695.1 MGP_C3HHeJ_G0039660.1 mouse_genomes_project 13 19891281 19892274 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011255.1 MGP_C3HHeJ_G0009388.1 mouse_genomes_project 13 36885594 36885822 - Gm22035 misc_RNA misc_RNA MGP_C3HHeJ_T0035890.1 MGP_C3HHeJ_G0019939.1 mouse_genomes_project 13 448037 449463 - MGP_C3HHeJ_P0035890 Calml3 protein_coding protein_coding MGP_C3HHeJ_T0036233.1 MGP_C3HHeJ_G0020110.1 mouse_genomes_project 13 21067459 21068812 - MGP_C3HHeJ_P0036233 Hist1h4c protein_coding protein_coding MGP_C3HHeJ_T0037344.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76288689 76934360 + MGP_C3HHeJ_P0037344 Mctp1 protein_coding protein_coding MGP_C3HHeJ_T0037345.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76482630 76660776 + MGP_C3HHeJ_P0037345 Mctp1 protein_coding protein_coding MGP_C3HHeJ_T0037346.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76482684 76631365 + MGP_C3HHeJ_P0037346 Mctp1 protein_coding protein_coding MGP_C3HHeJ_T0037347.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76482717 76932512 + MGP_C3HHeJ_P0037347 Mctp1 protein_coding protein_coding MGP_C3HHeJ_T0037348.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76620085 76726785 + Mctp1 protein_coding retained_intron MGP_C3HHeJ_T0037349.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76723158 76726026 + Mctp1 protein_coding retained_intron MGP_C3HHeJ_T0037350.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76723397 76933299 + Mctp1 protein_coding retained_intron MGP_C3HHeJ_T0037351.1 MGP_C3HHeJ_G0020525.1 mouse_genomes_project 13 76723434 76726228 + Mctp1 protein_coding retained_intron MGP_C3HHeJ_T0036895.1 MGP_C3HHeJ_G0020345.1 mouse_genomes_project 13 54239287 54253175 - MGP_C3HHeJ_P0036895 F12 protein_coding protein_coding MGP_C3HHeJ_T0036896.1 MGP_C3HHeJ_G0020345.1 mouse_genomes_project 13 54242184 54253161 - MGP_C3HHeJ_P0036896 F12 protein_coding protein_coding MGP_C3HHeJ_T0036091.1 MGP_C3HHeJ_G0020011.1 mouse_genomes_project 13 18029771 18258748 + MGP_C3HHeJ_P0036091 Aoah protein_coding protein_coding MGP_C3HHeJ_T0012780.1 MGP_C3HHeJ_G0010884.1 mouse_genomes_project 13 27937169 27937598 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003377.1 MGP_C3HHeJ_G0003100.1 mouse_genomes_project 13 38785267 38793506 + Gm26688 antisense antisense MGP_C3HHeJ_T0037539.1 MGP_C3HHeJ_G0020569.1 mouse_genomes_project 13 93717153 93788425 - MGP_C3HHeJ_P0037539 Jmy protein_coding protein_coding MGP_C3HHeJ_T0036885.1 MGP_C3HHeJ_G0020339.1 mouse_genomes_project 13 54141328 54144545 + MGP_C3HHeJ_P0036885 Prelid1 protein_coding protein_coding MGP_C3HHeJ_T0012747.1 MGP_C3HHeJ_G0010851.1 mouse_genomes_project 13 18628828 18629268 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012832.1 MGP_C3HHeJ_G0010936.1 mouse_genomes_project 13 112403423 112403667 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036124.1 MGP_C3HHeJ_G0020026.1 mouse_genomes_project 13 18767851 18785775 - MGP_C3HHeJ_P0036124 Zkscan8 protein_coding protein_coding MGP_C3HHeJ_T0036125.1 MGP_C3HHeJ_G0020026.1 mouse_genomes_project 13 18776460 18785687 - MGP_C3HHeJ_P0036125 Zkscan8 protein_coding protein_coding MGP_C3HHeJ_T0036126.1 MGP_C3HHeJ_G0020026.1 mouse_genomes_project 13 18781078 18785728 - MGP_C3HHeJ_P0036126 Zkscan8 protein_coding protein_coding MGP_C3HHeJ_T0037227.1 MGP_C3HHeJ_G0020472.1 mouse_genomes_project 13 67391018 67425328 + MGP_C3HHeJ_P0037227 Zfp273 protein_coding protein_coding MGP_C3HHeJ_T0037228.1 MGP_C3HHeJ_G0020472.1 mouse_genomes_project 13 67391090 67392542 + Zfp273 protein_coding retained_intron MGP_C3HHeJ_T0037229.1 MGP_C3HHeJ_G0020472.1 mouse_genomes_project 13 67391094 67425325 + MGP_C3HHeJ_P0037229 Zfp273 protein_coding protein_coding MGP_C3HHeJ_T0009857.1 MGP_C3HHeJ_G0007990.1 mouse_genomes_project 13 59554432 59554546 - Gm25000 miRNA miRNA MGP_C3HHeJ_T0011254.1 MGP_C3HHeJ_G0009387.1 mouse_genomes_project 13 32121843 32122131 - Gm24530 misc_RNA misc_RNA MGP_C3HHeJ_T0036017.1 MGP_C3HHeJ_G0019986.1 mouse_genomes_project 13 11119082 11163764 + MGP_C3HHeJ_P0036017 B3galnt2 protein_coding protein_coding MGP_C3HHeJ_T0036071.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16579413 16593119 - Stard3nl protein_coding retained_intron MGP_C3HHeJ_T0036072.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16579416 16580866 - Stard3nl protein_coding retained_intron MGP_C3HHeJ_T0036073.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16579416 16624601 - MGP_C3HHeJ_P0036073 Stard3nl protein_coding protein_coding MGP_C3HHeJ_T0036074.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16579741 16595524 - Stard3nl protein_coding retained_intron MGP_C3HHeJ_T0036075.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16590118 16624588 - MGP_C3HHeJ_P0036075 Stard3nl protein_coding protein_coding MGP_C3HHeJ_T0036076.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16594562 16624649 - Stard3nl protein_coding retained_intron MGP_C3HHeJ_T0036077.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16595479 16602578 - Stard3nl protein_coding retained_intron MGP_C3HHeJ_T0036078.1 MGP_C3HHeJ_G0020004.1 mouse_genomes_project 13 16602504 16624613 - MGP_C3HHeJ_P0036078 Stard3nl protein_coding protein_coding MGP_C3HHeJ_T0036373.1 MGP_C3HHeJ_G0020170.1 mouse_genomes_project 13 28577322 28716736 - MGP_C3HHeJ_P0036373 Exoc2 protein_coding protein_coding MGP_C3HHeJ_T0036374.1 MGP_C3HHeJ_G0020170.1 mouse_genomes_project 13 28577322 28741902 - MGP_C3HHeJ_P0036374 Exoc2 protein_coding protein_coding MGP_C3HHeJ_T0036380.1 MGP_C3HHeJ_G0020176.1 mouse_genomes_project 13 29576694 29580647 + MGP_C3HHeJ_P0036380 Foxc1 protein_coding protein_coding MGP_C3HHeJ_T0037267.1 MGP_C3HHeJ_G0020492.1 mouse_genomes_project 13 73209601 73259776 + MGP_C3HHeJ_P0037267 Lpcat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037268.1 MGP_C3HHeJ_G0020492.1 mouse_genomes_project 13 73209601 73259776 + MGP_C3HHeJ_P0037268 Lpcat1 protein_coding protein_coding MGP_C3HHeJ_T0037269.1 MGP_C3HHeJ_G0020492.1 mouse_genomes_project 13 73209635 73258466 + MGP_C3HHeJ_P0037269 Lpcat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037270.1 MGP_C3HHeJ_G0020492.1 mouse_genomes_project 13 73209827 73243854 + Lpcat1 protein_coding retained_intron MGP_C3HHeJ_T0037271.1 MGP_C3HHeJ_G0020492.1 mouse_genomes_project 13 73246218 73257195 + Lpcat1 protein_coding retained_intron MGP_C3HHeJ_T0037272.1 MGP_C3HHeJ_G0020492.1 mouse_genomes_project 13 73254302 73254960 + Lpcat1 protein_coding retained_intron MGP_C3HHeJ_T0037515.1 MGP_C3HHeJ_G0020560.1 mouse_genomes_project 13 92728094 92765878 - MGP_C3HHeJ_P0037515 Fam151b protein_coding protein_coding MGP_C3HHeJ_T0037919.1 MGP_C3HHeJ_G0020692.1 mouse_genomes_project 13 114801379 114802160 - MGP_C3HHeJ_P0037919 Hspb3 protein_coding protein_coding MGP_C3HHeJ_T0035923.1 MGP_C3HHeJ_G0019957.1 mouse_genomes_project 13 3309271 3342778 + MGP_C3HHeJ_P0035923 Pitrm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035924.1 MGP_C3HHeJ_G0019957.1 mouse_genomes_project 13 3309290 3343174 + MGP_C3HHeJ_P0035924 Pitrm1 protein_coding protein_coding MGP_C3HHeJ_T0036534.1 MGP_C3HHeJ_G0020235.1 mouse_genomes_project 13 39265182 39302937 - MGP_C3HHeJ_P0036534 Elovl2 protein_coding protein_coding MGP_C3HHeJ_T0036535.1 MGP_C3HHeJ_G0020235.1 mouse_genomes_project 13 39265186 39302694 - MGP_C3HHeJ_P0036535 Elovl2 protein_coding protein_coding MGP_C3HHeJ_T0037822.1 MGP_C3HHeJ_G0020659.1 mouse_genomes_project 13 107918715 107920424 + MGP_C3HHeJ_P0037822 3830408C21Rik protein_coding protein_coding MGP_C3HHeJ_T0006481.1 MGP_C3HHeJ_G0005372.1 mouse_genomes_project 13 44188851 44190107 + 5033430I15Rik lincRNA lincRNA MGP_C3HHeJ_T0006482.1 MGP_C3HHeJ_G0005372.1 mouse_genomes_project 13 44188949 44189776 + 5033430I15Rik lincRNA lincRNA MGP_C3HHeJ_T0036643.1 MGP_C3HHeJ_G0020273.1 mouse_genomes_project 13 46870504 46871794 + MGP_C3HHeJ_P0036643 A830005F24Rik protein_coding protein_coding MGP_C3HHeJ_T0037132.1 MGP_C3HHeJ_G0020420.1 mouse_genomes_project 13 63357775 63390451 - MGP_C3HHeJ_P0037132 Slc35d2 protein_coding protein_coding MGP_C3HHeJ_T0000845.1 MGP_C3HHeJ_G0000786.1 mouse_genomes_project 13 36079291 36081472 - TEC TEC MGP_C3HHeJ_T0000846.1 MGP_C3HHeJ_G0000786.1 mouse_genomes_project 13 36081112 36081472 - TEC TEC MGP_C3HHeJ_T0006464.1 MGP_C3HHeJ_G0005360.1 mouse_genomes_project 13 32811001 32842352 + Gm16984 lincRNA lincRNA MGP_C3HHeJ_T0006465.1 MGP_C3HHeJ_G0005360.1 mouse_genomes_project 13 32811024 32831463 + Gm16984 lincRNA lincRNA MGP_C3HHeJ_T0006466.1 MGP_C3HHeJ_G0005360.1 mouse_genomes_project 13 32811077 32839771 + Gm16984 lincRNA lincRNA MGP_C3HHeJ_T0036433.1 MGP_C3HHeJ_G0020195.1 mouse_genomes_project 13 31866998 31903386 + MGP_C3HHeJ_P0036433 Bphl protein_coding protein_coding MGP_C3HHeJ_T0036855.1 MGP_C3HHeJ_G0020332.1 mouse_genomes_project 13 53801535 53816890 - MGP_C3HHeJ_P0036855 Hk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036856.1 MGP_C3HHeJ_G0020332.1 mouse_genomes_project 13 53801611 53816498 - MGP_C3HHeJ_P0036856 Hk3 protein_coding protein_coding MGP_C3HHeJ_T0036857.1 MGP_C3HHeJ_G0020332.1 mouse_genomes_project 13 53801714 53815011 - MGP_C3HHeJ_P0036857 Hk3 protein_coding protein_coding MGP_C3HHeJ_T0036858.1 MGP_C3HHeJ_G0020332.1 mouse_genomes_project 13 53810606 53816891 - MGP_C3HHeJ_P0036858 Hk3 protein_coding protein_coding MGP_C3HHeJ_T0036859.1 MGP_C3HHeJ_G0020332.1 mouse_genomes_project 13 53810656 53816916 - MGP_C3HHeJ_P0036859 Hk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036860.1 MGP_C3HHeJ_G0020332.1 mouse_genomes_project 13 53811344 53816811 - MGP_C3HHeJ_P0036860 Hk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009872.1 MGP_C3HHeJ_G0008005.1 mouse_genomes_project 13 94118694 94118755 + Mir5624 miRNA miRNA MGP_C3HHeJ_T0037812.1 MGP_C3HHeJ_G0020657.1 mouse_genomes_project 13 107829516 107842805 + MGP_C3HHeJ_P0037812 Dimt1 protein_coding protein_coding MGP_C3HHeJ_T0037813.1 MGP_C3HHeJ_G0020657.1 mouse_genomes_project 13 107834295 107841402 + MGP_C3HHeJ_P0037813 Dimt1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036145.1 MGP_C3HHeJ_G0020042.1 mouse_genomes_project 13 19016865 19017177 - MGP_C3HHeJ_P0036145 Hist1h4k protein_coding protein_coding MGP_C3HHeJ_T0036227.1 MGP_C3HHeJ_G0020106.1 mouse_genomes_project 13 20949984 20990567 - MGP_C3HHeJ_P0036227 Hist1h2be protein_coding protein_coding MGP_C3HHeJ_T0036228.1 MGP_C3HHeJ_G0020106.1 mouse_genomes_project 13 20949985 20990597 - MGP_C3HHeJ_P0036228 Hist1h2be protein_coding protein_coding MGP_C3HHeJ_T0036229.1 MGP_C3HHeJ_G0020106.1 mouse_genomes_project 13 20988452 20990551 - Hist1h2be protein_coding processed_transcript MGP_C3HHeJ_T0037130.1 MGP_C3HHeJ_G0020419.1 mouse_genomes_project 13 63316911 63348324 - MGP_C3HHeJ_P0037130 Hsd17b3 protein_coding protein_coding MGP_C3HHeJ_T0037131.1 MGP_C3HHeJ_G0020419.1 mouse_genomes_project 13 63316911 63348339 - MGP_C3HHeJ_P0037131 Hsd17b3 protein_coding protein_coding MGP_C3HHeJ_T0009854.1 MGP_C3HHeJ_G0007987.1 mouse_genomes_project 13 57265959 57266065 - Mir6369 miRNA miRNA MGP_C3HHeJ_T0036756.1 MGP_C3HHeJ_G0020308.1 mouse_genomes_project 13 51675919 51689750 - MGP_C3HHeJ_P0036756 Nfil3 protein_coding protein_coding MGP_C3HHeJ_T0037149.1 MGP_C3HHeJ_G0020431.1 mouse_genomes_project 13 64290086 64298221 - MGP_C3HHeJ_P0037149 Prss47 protein_coding protein_coding MGP_C3HHeJ_T0037150.1 MGP_C3HHeJ_G0020431.1 mouse_genomes_project 13 64290392 64297308 - MGP_C3HHeJ_P0037150 Prss47 protein_coding protein_coding MGP_C3HHeJ_T0036085.1 MGP_C3HHeJ_G0020009.1 mouse_genomes_project 13 16989021 17065028 - MGP_C3HHeJ_P0036085 Gpr141 protein_coding protein_coding MGP_C3HHeJ_T0036294.1 MGP_C3HHeJ_G0020132.1 mouse_genomes_project 13 22223373 22238725 - MGP_C3HHeJ_P0036294 Acot13 protein_coding protein_coding MGP_C3HHeJ_T0003441.1 MGP_C3HHeJ_G0003137.1 mouse_genomes_project 13 120039428 120060163 - Gm16263 antisense antisense MGP_C3HHeJ_T0009825.1 MGP_C3HHeJ_G0007958.1 mouse_genomes_project 13 3863626 3863736 - Gm22689 miRNA miRNA MGP_C3HHeJ_T0036645.1 MGP_C3HHeJ_G0020275.1 mouse_genomes_project 13 47021336 47024846 + MGP_C3HHeJ_P0036645 Barx1 protein_coding protein_coding MGP_C3HHeJ_T0037717.1 MGP_C3HHeJ_G0020632.1 mouse_genomes_project 13 101372885 101409259 - MGP_C3HHeJ_P0037717 Cdk7 protein_coding protein_coding MGP_C3HHeJ_T0037200.1 MGP_C3HHeJ_G0020459.1 mouse_genomes_project 13 66977540 66986940 - MGP_C3HHeJ_P0037200 protein_coding protein_coding MGP_C3HHeJ_T0036546.1 MGP_C3HHeJ_G0020242.1 mouse_genomes_project 13 40162320 40299206 + MGP_C3HHeJ_P0036546 Hivep1 protein_coding protein_coding MGP_C3HHeJ_T0037012.1 MGP_C3HHeJ_G0020383.1 mouse_genomes_project 13 57359366 57368090 + MGP_C3HHeJ_P0037012 Rmi1 protein_coding protein_coding MGP_C3HHeJ_T0037655.1 MGP_C3HHeJ_G0020611.1 mouse_genomes_project 13 99228602 99231041 - MGP_C3HHeJ_P0037655 Tmem174 protein_coding protein_coding MGP_C3HHeJ_T0009878.1 MGP_C3HHeJ_G0008011.1 mouse_genomes_project 13 110879681 110879761 + Mir1904 miRNA miRNA MGP_C3HHeJ_T0036402.1 MGP_C3HHeJ_G0020187.1 mouse_genomes_project 13 30954823 30964843 - MGP_C3HHeJ_P0036402 Serpinb9c protein_coding protein_coding MGP_C3HHeJ_T0036403.1 MGP_C3HHeJ_G0020187.1 mouse_genomes_project 13 30961566 30963596 - MGP_C3HHeJ_P0036403 Serpinb9c protein_coding protein_coding MGP_C3HHeJ_T0036149.1 MGP_C3HHeJ_G0020046.1 mouse_genomes_project 13 19042240 19042983 - MGP_C3HHeJ_P0036149 Hist1h1b protein_coding protein_coding MGP_C3HHeJ_T0100157.1 MGP_C3HHeJ_G0038351.1 mouse_genomes_project 13 75649795 75649925 + Gm23127 snoRNA snoRNA MGP_C3HHeJ_T0036221.1 MGP_C3HHeJ_G0020100.1 mouse_genomes_project 13 20908422 20909268 + MGP_C3HHeJ_P0036221 Hist1h3e protein_coding protein_coding MGP_C3HHeJ_T0000860.1 MGP_C3HHeJ_G0000800.1 mouse_genomes_project 13 90474308 90474823 + TEC TEC MGP_C3HHeJ_T0100141.1 MGP_C3HHeJ_G0038335.1 mouse_genomes_project 13 29195353 29195478 + Gm23351 snoRNA snoRNA MGP_C3HHeJ_T0037973.1 MGP_C3HHeJ_G0020717.1 mouse_genomes_project 13 121213957 121214739 - MGP_C3HHeJ_P0037973 protein_coding protein_coding MGP_C3HHeJ_T0037933.1 MGP_C3HHeJ_G0020697.1 mouse_genomes_project 13 116026799 116129965 - MGP_C3HHeJ_P0037933 Itga2 protein_coding protein_coding MGP_C3HHeJ_T0036317.1 MGP_C3HHeJ_G0020142.1 mouse_genomes_project 13 24539437 24659193 + MGP_C3HHeJ_P0036317 protein_coding protein_coding MGP_C3HHeJ_T0000843.1 MGP_C3HHeJ_G0000784.1 mouse_genomes_project 13 16621972 16624307 - TEC TEC MGP_C3HHeJ_T0012833.1 MGP_C3HHeJ_G0010937.1 mouse_genomes_project 13 112946045 112947830 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006469.1 MGP_C3HHeJ_G0005362.1 mouse_genomes_project 13 35352187 35353889 - Gm29459 lincRNA lincRNA MGP_C3HHeJ_T0009875.1 MGP_C3HHeJ_G0008008.1 mouse_genomes_project 13 96785083 96785196 + Gm25213 miRNA miRNA MGP_C3HHeJ_T0037248.1 MGP_C3HHeJ_G0020482.1 mouse_genomes_project 13 69372656 69410354 - MGP_C3HHeJ_P0037248 protein_coding protein_coding MGP_C3HHeJ_T0036735.1 MGP_C3HHeJ_G0020304.1 mouse_genomes_project 13 50519578 50521369 + MGP_C3HHeJ_P0036735 Gadd45g protein_coding protein_coding MGP_C3HHeJ_T0036736.1 MGP_C3HHeJ_G0020304.1 mouse_genomes_project 13 50519644 50521125 + Gadd45g protein_coding retained_intron MGP_C3HHeJ_T0036242.1 MGP_C3HHeJ_G0020117.1 mouse_genomes_project 13 21141230 21141764 - MGP_C3HHeJ_P0036242 Hist1h3a protein_coding protein_coding MGP_C3HHeJ_T0098888.1 MGP_C3HHeJ_G0037082.1 mouse_genomes_project 13 30566997 30567106 + Gm27342 snRNA snRNA MGP_C3HHeJ_T0012735.1 MGP_C3HHeJ_G0010839.1 mouse_genomes_project 13 34487 46305 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037559.1 MGP_C3HHeJ_G0020578.1 mouse_genomes_project 13 95153041 95206916 + MGP_C3HHeJ_P0037559 Tbca protein_coding protein_coding MGP_C3HHeJ_T0012772.1 MGP_C3HHeJ_G0010876.1 mouse_genomes_project 13 24221517 24221939 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006463.1 MGP_C3HHeJ_G0005359.1 mouse_genomes_project 13 30170466 30174246 - Gm11381 lincRNA lincRNA MGP_C3HHeJ_T0036253.1 MGP_C3HHeJ_G0020123.1 mouse_genomes_project 13 21280544 21297812 - MGP_C3HHeJ_P0036253 Slc17a4 protein_coding protein_coding MGP_C3HHeJ_T0036254.1 MGP_C3HHeJ_G0020123.1 mouse_genomes_project 13 21280695 21297814 - MGP_C3HHeJ_P0036254 Slc17a4 protein_coding protein_coding MGP_C3HHeJ_T0037154.1 MGP_C3HHeJ_G0020433.1 mouse_genomes_project 13 64404022 64404970 + MGP_C3HHeJ_P0037154 Olfr465-ps1 protein_coding protein_coding MGP_C3HHeJ_T0037089.1 MGP_C3HHeJ_G0020412.1 mouse_genomes_project 13 62002090 62008749 - MGP_C3HHeJ_P0037089 Gm5141 protein_coding protein_coding MGP_C3HHeJ_T0012740.1 MGP_C3HHeJ_G0010844.1 mouse_genomes_project 13 5952422 5952573 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037911.1 MGP_C3HHeJ_G0020688.1 mouse_genomes_project 13 114293743 114357343 - MGP_C3HHeJ_P0037911 Gzmk protein_coding protein_coding MGP_C3HHeJ_T0037912.1 MGP_C3HHeJ_G0020688.1 mouse_genomes_project 13 114293773 114304843 - MGP_C3HHeJ_P0037912 Gzmk protein_coding protein_coding MGP_C3HHeJ_T0037913.1 MGP_C3HHeJ_G0020688.1 mouse_genomes_project 13 114293927 114304867 - MGP_C3HHeJ_P0037913 Gzmk protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098883.1 MGP_C3HHeJ_G0037077.1 mouse_genomes_project 13 21031245 21031349 + Gm22452 snRNA snRNA MGP_C3HHeJ_T0017142.1 MGP_C3HHeJ_G0015021.1 mouse_genomes_project 13 109267560 109270685 - Gm2822 processed_transcript processed_transcript MGP_C3HHeJ_T0101688.1 MGP_C3HHeJ_G0039653.1 mouse_genomes_project 13 19587054 19587921 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037586.1 MGP_C3HHeJ_G0020585.1 mouse_genomes_project 13 95857405 95858769 - MGP_C3HHeJ_P0037586 S100z protein_coding protein_coding MGP_C3HHeJ_T0037591.1 MGP_C3HHeJ_G0020590.1 mouse_genomes_project 13 96354072 96540907 - MGP_C3HHeJ_P0037591 Sv2c protein_coding protein_coding MGP_C3HHeJ_T0037592.1 MGP_C3HHeJ_G0020590.1 mouse_genomes_project 13 96360500 96385021 - Sv2c protein_coding processed_transcript MGP_C3HHeJ_T0037593.1 MGP_C3HHeJ_G0020590.1 mouse_genomes_project 13 96376011 96496785 - MGP_C3HHeJ_P0037593 Sv2c protein_coding protein_coding MGP_C3HHeJ_T0036058.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15305700 15572075 - MGP_C3HHeJ_P0036058 Pou6f2 protein_coding protein_coding MGP_C3HHeJ_T0036059.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15309697 15572075 - MGP_C3HHeJ_P0036059 Pou6f2 protein_coding protein_coding MGP_C3HHeJ_T0036060.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15309728 15359001 - MGP_C3HHeJ_P0036060 Pou6f2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036061.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15309766 15695475 - MGP_C3HHeJ_P0036061 Pou6f2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036062.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15324507 15372861 - Pou6f2 protein_coding processed_transcript MGP_C3HHeJ_T0036063.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15324507 15359006 - MGP_C3HHeJ_P0036063 Pou6f2 protein_coding protein_coding MGP_C3HHeJ_T0036064.1 MGP_C3HHeJ_G0020001.1 mouse_genomes_project 13 15334946 15572075 - Pou6f2 protein_coding processed_transcript MGP_C3HHeJ_T0036574.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42916691 42918794 + Jarid2 protein_coding processed_transcript MGP_C3HHeJ_T0036575.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42916752 43040166 + MGP_C3HHeJ_P0036575 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036576.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42917012 43015549 + MGP_C3HHeJ_P0036576 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036577.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42917991 43118331 + MGP_C3HHeJ_P0036577 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036578.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918040 43119219 + MGP_C3HHeJ_P0036578 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036579.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918055 43100593 + MGP_C3HHeJ_P0036579 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036580.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918076 43068669 + Jarid2 protein_coding processed_transcript MGP_C3HHeJ_T0036581.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918491 43119867 + MGP_C3HHeJ_P0036581 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036582.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918507 43015442 + MGP_C3HHeJ_P0036582 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036583.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918588 43082402 + Jarid2 protein_coding retained_intron MGP_C3HHeJ_T0036584.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918590 43119864 + Jarid2 protein_coding retained_intron MGP_C3HHeJ_T0036585.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42918817 43082122 + MGP_C3HHeJ_P0036585 Jarid2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036586.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42919078 43068660 + Jarid2 protein_coding processed_transcript MGP_C3HHeJ_T0036587.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 42922086 43068632 + Jarid2 protein_coding processed_transcript MGP_C3HHeJ_T0036588.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 43032689 43112542 + MGP_C3HHeJ_P0036588 Jarid2 protein_coding protein_coding MGP_C3HHeJ_T0036589.1 MGP_C3HHeJ_G0020253.1 mouse_genomes_project 13 43032781 43093816 + MGP_C3HHeJ_P0036589 Jarid2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006533.1 MGP_C3HHeJ_G0005405.1 mouse_genomes_project 13 91607436 91626909 - A830009L08Rik lincRNA lincRNA MGP_C3HHeJ_T0002546.1 MGP_C3HHeJ_G0002456.1 mouse_genomes_project 13 16388066 16388535 + MGP_C3HHeJ_P0002546 Tcrg-V7 TR_V_gene TR_V_gene MGP_C3HHeJ_T0012761.1 MGP_C3HHeJ_G0010865.1 mouse_genomes_project 13 21307025 21307390 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003385.1 MGP_C3HHeJ_G0003108.1 mouse_genomes_project 13 54433800 54436403 - Gm15911 antisense antisense MGP_C3HHeJ_T0006524.1 MGP_C3HHeJ_G0005400.1 mouse_genomes_project 13 81774190 81779167 - Gm17259 lincRNA lincRNA MGP_C3HHeJ_T0036612.1 MGP_C3HHeJ_G0020265.1 mouse_genomes_project 13 45024127 45212609 - MGP_C3HHeJ_P0036612 Kif13a protein_coding protein_coding MGP_C3HHeJ_T0036613.1 MGP_C3HHeJ_G0020265.1 mouse_genomes_project 13 45024128 45211487 - MGP_C3HHeJ_P0036613 Kif13a protein_coding unknown_likely_coding MGP_C3HHeJ_T0037716.1 MGP_C3HHeJ_G0020631.1 mouse_genomes_project 13 101343047 101372284 + MGP_C3HHeJ_P0037716 Ccdc125 protein_coding protein_coding MGP_C3HHeJ_T0037706.1 MGP_C3HHeJ_G0020627.1 mouse_genomes_project 13 101176085 101229607 - MGP_C3HHeJ_P0037706 Ocln protein_coding protein_coding MGP_C3HHeJ_T0037707.1 MGP_C3HHeJ_G0020627.1 mouse_genomes_project 13 101188457 101229483 - MGP_C3HHeJ_P0037707 Ocln protein_coding protein_coding MGP_C3HHeJ_T0100134.1 MGP_C3HHeJ_G0038328.1 mouse_genomes_project 13 10464502 10464729 + Gm25483 snoRNA snoRNA MGP_C3HHeJ_T0036054.1 MGP_C3HHeJ_G0019997.1 mouse_genomes_project 13 13996370 14863156 - MGP_C3HHeJ_P0036054 Sugct protein_coding protein_coding MGP_C3HHeJ_T0036080.1 MGP_C3HHeJ_G0020006.1 mouse_genomes_project 13 16860135 16869756 + MGP_C3HHeJ_P0036080 Sfrp4 protein_coding protein_coding MGP_C3HHeJ_T0036593.1 MGP_C3HHeJ_G0020256.1 mouse_genomes_project 13 43588419 43610130 + MGP_C3HHeJ_P0036593 Mylip protein_coding protein_coding MGP_C3HHeJ_T0101692.1 MGP_C3HHeJ_G0039657.1 mouse_genomes_project 13 19768697 19771240 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037863.1 MGP_C3HHeJ_G0020667.1 mouse_genomes_project 13 111043078 111268669 - MGP_C3HHeJ_P0037863 Rab3c protein_coding protein_coding MGP_C3HHeJ_T0036893.1 MGP_C3HHeJ_G0020343.1 mouse_genomes_project 13 54222250 54236024 + MGP_C3HHeJ_P0036893 Slc34a1 protein_coding protein_coding MGP_C3HHeJ_T0037201.1 MGP_C3HHeJ_G0020460.1 mouse_genomes_project 13 66993659 67003983 - MGP_C3HHeJ_P0037201 Zfp58 protein_coding protein_coding MGP_C3HHeJ_T0037202.1 MGP_C3HHeJ_G0020460.1 mouse_genomes_project 13 66993660 67004035 - MGP_C3HHeJ_P0037202 Zfp58 protein_coding protein_coding MGP_C3HHeJ_T0037204.1 MGP_C3HHeJ_G0020460.1 mouse_genomes_project 13 66995144 67003967 - MGP_C3HHeJ_P0037204 Zfp58 protein_coding protein_coding MGP_C3HHeJ_T0037205.1 MGP_C3HHeJ_G0020460.1 mouse_genomes_project 13 66995359 67003924 - MGP_C3HHeJ_P0037205 Zfp58 protein_coding protein_coding MGP_C3HHeJ_T0036081.1 MGP_C3HHeJ_G0020007.1 mouse_genomes_project 13 16882001 16934735 - MGP_C3HHeJ_P0036081 Nme8 protein_coding protein_coding MGP_C3HHeJ_T0036082.1 MGP_C3HHeJ_G0020007.1 mouse_genomes_project 13 16882001 16934769 - MGP_C3HHeJ_P0036082 Nme8 protein_coding protein_coding MGP_C3HHeJ_T0036083.1 MGP_C3HHeJ_G0020007.1 mouse_genomes_project 13 16913090 16926617 - Nme8 protein_coding processed_transcript MGP_C3HHeJ_T0037560.1 MGP_C3HHeJ_G0020579.1 mouse_genomes_project 13 95239917 95249296 + MGP_C3HHeJ_P0037560 Otp protein_coding protein_coding MGP_C3HHeJ_T0037561.1 MGP_C3HHeJ_G0020579.1 mouse_genomes_project 13 95246915 95247866 + Otp protein_coding processed_transcript MGP_C3HHeJ_T0000864.1 MGP_C3HHeJ_G0000804.1 mouse_genomes_project 13 99098040 99098627 - TEC TEC MGP_C3HHeJ_T0036530.1 MGP_C3HHeJ_G0020233.1 mouse_genomes_project 13 39182752 39191304 - MGP_C3HHeJ_P0036530 Gcm2 protein_coding protein_coding MGP_C3HHeJ_T0101132.1 MGP_C3HHeJ_G0039299.1 mouse_genomes_project 13 103940445 103944721 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0098900.1 MGP_C3HHeJ_G0037094.1 mouse_genomes_project 13 62018096 62018203 + Gm25448 snRNA snRNA MGP_C3HHeJ_T0098908.1 MGP_C3HHeJ_G0037102.1 mouse_genomes_project 13 104437736 104437843 + Gm24870 snRNA snRNA MGP_C3HHeJ_T0017132.1 MGP_C3HHeJ_G0015014.1 mouse_genomes_project 13 32495551 32509404 + Gm15908 processed_transcript processed_transcript MGP_C3HHeJ_T0036721.1 MGP_C3HHeJ_G0020302.1 mouse_genomes_project 13 50342239 50359666 - MGP_C3HHeJ_P0036721 Gm15440 protein_coding protein_coding MGP_C3HHeJ_T0012744.1 MGP_C3HHeJ_G0010848.1 mouse_genomes_project 13 16641547 16641996 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037836.1 MGP_C3HHeJ_G0020664.1 mouse_genomes_project 13 109160093 109236478 + MGP_C3HHeJ_P0037836 Elovl7 protein_coding protein_coding MGP_C3HHeJ_T0036144.1 MGP_C3HHeJ_G0020041.1 mouse_genomes_project 13 19001249 19002023 + MGP_C3HHeJ_P0036144 Hist1h4j protein_coding protein_coding MGP_C3HHeJ_T0006454.1 MGP_C3HHeJ_G0005354.1 mouse_genomes_project 13 29120770 29138449 - G630018N14Rik lincRNA lincRNA MGP_C3HHeJ_T0006455.1 MGP_C3HHeJ_G0005354.1 mouse_genomes_project 13 29131780 29137077 - G630018N14Rik lincRNA lincRNA MGP_C3HHeJ_T0036954.1 MGP_C3HHeJ_G0020365.1 mouse_genomes_project 13 55155882 55163787 - MGP_C3HHeJ_P0036954 Cxcl14 protein_coding protein_coding MGP_C3HHeJ_T0037604.1 MGP_C3HHeJ_G0020595.1 mouse_genomes_project 13 96913314 96913702 + MGP_C3HHeJ_P0037604 Gm17622 protein_coding protein_coding MGP_C3HHeJ_T0036401.1 MGP_C3HHeJ_G0020186.1 mouse_genomes_project 13 30878146 30894597 + MGP_C3HHeJ_P0036401 Serpinb1b protein_coding unknown_likely_coding MGP_C3HHeJ_T0098907.1 MGP_C3HHeJ_G0037101.1 mouse_genomes_project 13 101276096 101276200 + Gm24261 snRNA snRNA MGP_C3HHeJ_T0037138.1 MGP_C3HHeJ_G0020423.1 mouse_genomes_project 13 63457533 63541880 - MGP_C3HHeJ_P0037138 Cdc14b protein_coding protein_coding MGP_C3HHeJ_T0037139.1 MGP_C3HHeJ_G0020423.1 mouse_genomes_project 13 63457533 63515896 - MGP_C3HHeJ_P0037139 Cdc14b protein_coding protein_coding MGP_C3HHeJ_T0037140.1 MGP_C3HHeJ_G0020423.1 mouse_genomes_project 13 63460335 63541786 - MGP_C3HHeJ_P0037140 Cdc14b protein_coding protein_coding MGP_C3HHeJ_T0037141.1 MGP_C3HHeJ_G0020423.1 mouse_genomes_project 13 63461613 63515830 - MGP_C3HHeJ_P0037141 Cdc14b protein_coding unknown_likely_coding MGP_C3HHeJ_T0097855.1 MGP_C3HHeJ_G0036067.1 mouse_genomes_project 13 9627339 9627746 - pseudogene pseudogene MGP_C3HHeJ_T0009863.1 MGP_C3HHeJ_G0007996.1 mouse_genomes_project 13 62533816 62533884 + Mir24-1 miRNA miRNA MGP_C3HHeJ_T0037837.1 MGP_C3HHeJ_G0020665.1 mouse_genomes_project 13 109270743 109346820 + MGP_C3HHeJ_P0037837 Depdc1b protein_coding protein_coding MGP_C3HHeJ_T0037838.1 MGP_C3HHeJ_G0020665.1 mouse_genomes_project 13 109270779 109278932 + Depdc1b protein_coding retained_intron MGP_C3HHeJ_T0037839.1 MGP_C3HHeJ_G0020665.1 mouse_genomes_project 13 109270791 109358612 + MGP_C3HHeJ_P0037839 Depdc1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037840.1 MGP_C3HHeJ_G0020665.1 mouse_genomes_project 13 109270833 109345947 + MGP_C3HHeJ_P0037840 Depdc1b protein_coding protein_coding MGP_C3HHeJ_T0037841.1 MGP_C3HHeJ_G0020665.1 mouse_genomes_project 13 109280991 109325964 + Depdc1b protein_coding processed_transcript MGP_C3HHeJ_T0037842.1 MGP_C3HHeJ_G0020665.1 mouse_genomes_project 13 109315170 109331036 + Depdc1b protein_coding retained_intron MGP_C3HHeJ_T0036237.1 MGP_C3HHeJ_G0020112.1 mouse_genomes_project 13 21113572 21116315 + MGP_C3HHeJ_P0036237 Hist1h1c protein_coding protein_coding MGP_C3HHeJ_T0037185.1 MGP_C3HHeJ_G0020446.1 mouse_genomes_project 13 66564132 66577532 + MGP_C3HHeJ_P0037185 Zfp759 protein_coding protein_coding MGP_C3HHeJ_T0006430.1 MGP_C3HHeJ_G0005335.1 mouse_genomes_project 13 6211834 6216432 + Gm26601 lincRNA lincRNA MGP_C3HHeJ_T0012798.1 MGP_C3HHeJ_G0010902.1 mouse_genomes_project 13 63198781 63199425 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006549.1 MGP_C3HHeJ_G0005417.1 mouse_genomes_project 13 100134236 100139079 + Gm26559 lincRNA lincRNA MGP_C3HHeJ_T0098890.1 MGP_C3HHeJ_G0037084.1 mouse_genomes_project 13 37881832 37881997 - Gm23972 snRNA snRNA MGP_C3HHeJ_T0036400.1 MGP_C3HHeJ_G0020185.1 mouse_genomes_project 13 30834412 30849465 + MGP_C3HHeJ_P0036400 Serpinb9b protein_coding protein_coding MGP_C3HHeJ_T0037557.1 MGP_C3HHeJ_G0020577.1 mouse_genomes_project 13 94707789 94925965 + MGP_C3HHeJ_P0037557 Ap3b1 protein_coding protein_coding MGP_C3HHeJ_T0037558.1 MGP_C3HHeJ_G0020577.1 mouse_genomes_project 13 94707933 94925970 + MGP_C3HHeJ_P0037558 Ap3b1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036187.1 MGP_C3HHeJ_G0020072.1 mouse_genomes_project 13 19691047 19691986 + MGP_C3HHeJ_P0036187 Vmn1r200 protein_coding protein_coding MGP_C3HHeJ_T0036900.1 MGP_C3HHeJ_G0020347.1 mouse_genomes_project 13 54292052 54300950 + MGP_C3HHeJ_P0036900 Prr7 protein_coding protein_coding MGP_C3HHeJ_T0037155.1 MGP_C3HHeJ_G0020434.1 mouse_genomes_project 13 64412038 64412965 + MGP_C3HHeJ_P0037155 Olfr466 protein_coding protein_coding MGP_C3HHeJ_T0017119.1 MGP_C3HHeJ_G0015007.1 mouse_genomes_project 13 19314365 19315925 + Gm11291 processed_transcript processed_transcript MGP_C3HHeJ_T0036710.1 MGP_C3HHeJ_G0020296.1 mouse_genomes_project 13 49120360 49128409 + MGP_C3HHeJ_P0036710 Nutm2 protein_coding protein_coding MGP_C3HHeJ_T0036926.1 MGP_C3HHeJ_G0020354.1 mouse_genomes_project 13 54431499 54442079 + MGP_C3HHeJ_P0036926 B4galt7 protein_coding protein_coding MGP_C3HHeJ_T0036927.1 MGP_C3HHeJ_G0020354.1 mouse_genomes_project 13 54431668 54439654 + B4galt7 protein_coding retained_intron MGP_C3HHeJ_T0036928.1 MGP_C3HHeJ_G0020354.1 mouse_genomes_project 13 54431668 54440438 + MGP_C3HHeJ_P0036928 B4galt7 protein_coding protein_coding MGP_C3HHeJ_T0036929.1 MGP_C3HHeJ_G0020354.1 mouse_genomes_project 13 54431668 54442078 + MGP_C3HHeJ_P0036929 B4galt7 protein_coding protein_coding MGP_C3HHeJ_T0036287.1 MGP_C3HHeJ_G0020130.1 mouse_genomes_project 13 22157866 22167911 - MGP_C3HHeJ_P0036287 Gmnn protein_coding protein_coding MGP_C3HHeJ_T0036288.1 MGP_C3HHeJ_G0020130.1 mouse_genomes_project 13 22157866 22167849 - MGP_C3HHeJ_P0036288 Gmnn protein_coding protein_coding MGP_C3HHeJ_T0036289.1 MGP_C3HHeJ_G0020130.1 mouse_genomes_project 13 22158112 22167464 - MGP_C3HHeJ_P0036289 Gmnn protein_coding protein_coding MGP_C3HHeJ_T0036290.1 MGP_C3HHeJ_G0020130.1 mouse_genomes_project 13 22158209 22167428 - MGP_C3HHeJ_P0036290 Gmnn protein_coding protein_coding MGP_C3HHeJ_T0036291.1 MGP_C3HHeJ_G0020130.1 mouse_genomes_project 13 22159698 22167885 - MGP_C3HHeJ_P0036291 Gmnn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035961.1 MGP_C3HHeJ_G0019963.1 mouse_genomes_project 13 5753301 5766725 + MGP_C3HHeJ_P0035961 protein_coding protein_coding MGP_C3HHeJ_T0036191.1 MGP_C3HHeJ_G0020076.1 mouse_genomes_project 13 19844839 19847007 + MGP_C3HHeJ_P0036191 Vmn1r204 protein_coding protein_coding MGP_C3HHeJ_T0006438.1 MGP_C3HHeJ_G0005342.1 mouse_genomes_project 13 22027271 22033921 - C530050E15Rik lincRNA lincRNA MGP_C3HHeJ_T0037886.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113560452 113580617 + MGP_C3HHeJ_P0037886 Il6st protein_coding protein_coding MGP_C3HHeJ_T0037887.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113560452 113601441 + MGP_C3HHeJ_P0037887 Il6st protein_coding protein_coding MGP_C3HHeJ_T0037888.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113560581 113601541 + MGP_C3HHeJ_P0037888 Il6st protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037889.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113563932 113576327 + MGP_C3HHeJ_P0037889 Il6st protein_coding protein_coding MGP_C3HHeJ_T0037890.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113571383 113600755 + MGP_C3HHeJ_P0037890 Il6st protein_coding protein_coding MGP_C3HHeJ_T0037891.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113571383 113600755 + MGP_C3HHeJ_P0037891 Il6st protein_coding protein_coding MGP_C3HHeJ_T0037892.1 MGP_C3HHeJ_G0020675.1 mouse_genomes_project 13 113571383 113601441 + MGP_C3HHeJ_P0037892 Il6st protein_coding protein_coding MGP_C3HHeJ_T0037873.1 MGP_C3HHeJ_G0020672.1 mouse_genomes_project 13 112757648 112782408 + MGP_C3HHeJ_P0037873 Mier3 protein_coding protein_coding MGP_C3HHeJ_T0037874.1 MGP_C3HHeJ_G0020672.1 mouse_genomes_project 13 112757697 112763174 + Mier3 protein_coding retained_intron MGP_C3HHeJ_T0037875.1 MGP_C3HHeJ_G0020672.1 mouse_genomes_project 13 112757698 112783364 + MGP_C3HHeJ_P0037875 Mier3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037876.1 MGP_C3HHeJ_G0020672.1 mouse_genomes_project 13 112757718 112783373 + MGP_C3HHeJ_P0037876 Mier3 protein_coding protein_coding MGP_C3HHeJ_T0000865.1 MGP_C3HHeJ_G0000805.1 mouse_genomes_project 13 100256683 100257513 + TEC TEC MGP_C3HHeJ_T0037546.1 MGP_C3HHeJ_G0020573.1 mouse_genomes_project 13 94096330 94278594 + MGP_C3HHeJ_P0037546 Arsb protein_coding protein_coding MGP_C3HHeJ_T0003425.1 MGP_C3HHeJ_G0003127.1 mouse_genomes_project 13 95582102 95582502 + antisense antisense MGP_C3HHeJ_T0037176.1 MGP_C3HHeJ_G0020442.1 mouse_genomes_project 13 66460367 66481877 - MGP_C3HHeJ_P0037176 Zfp712 protein_coding protein_coding MGP_C3HHeJ_T0009851.1 MGP_C3HHeJ_G0007984.1 mouse_genomes_project 13 54305474 54305570 - Mir6944 miRNA miRNA MGP_C3HHeJ_T0037547.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94399803 94546726 + MGP_C3HHeJ_P0037547 Lhfpl2 protein_coding protein_coding MGP_C3HHeJ_T0037548.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94399839 94472711 + Lhfpl2 protein_coding retained_intron MGP_C3HHeJ_T0037549.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94431672 94525445 + MGP_C3HHeJ_P0037549 Lhfpl2 protein_coding protein_coding MGP_C3HHeJ_T0037550.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94484667 94525131 + MGP_C3HHeJ_P0037550 Lhfpl2 protein_coding protein_coding MGP_C3HHeJ_T0037551.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94523614 94545834 + MGP_C3HHeJ_P0037551 Lhfpl2 protein_coding protein_coding MGP_C3HHeJ_T0037552.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94524578 94525018 + Lhfpl2 protein_coding processed_transcript MGP_C3HHeJ_T0037553.1 MGP_C3HHeJ_G0020574.1 mouse_genomes_project 13 94524796 94546726 + MGP_C3HHeJ_P0037553 Lhfpl2 protein_coding protein_coding MGP_C3HHeJ_T0012806.1 MGP_C3HHeJ_G0010910.1 mouse_genomes_project 13 68985593 68986589 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006487.1 MGP_C3HHeJ_G0005376.1 mouse_genomes_project 13 46891699 46893999 - 6720427I07Rik lincRNA lincRNA MGP_C3HHeJ_T0002552.1 MGP_C3HHeJ_G0002460.1 mouse_genomes_project 13 16490369 16490673 + MGP_C3HHeJ_P0002552 Tcrg-V3 TR_V_gene TR_V_gene MGP_C3HHeJ_T0002553.1 MGP_C3HHeJ_G0002460.1 mouse_genomes_project 13 16490372 16490673 + MGP_C3HHeJ_P0002553 Tcrg-V3 TR_V_gene TR_V_gene MGP_C3HHeJ_T0037946.1 MGP_C3HHeJ_G0020706.1 mouse_genomes_project 13 119719538 119721033 + MGP_C3HHeJ_P0037946 B430218F22Rik protein_coding protein_coding MGP_C3HHeJ_T0037696.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101127395 101169610 - MGP_C3HHeJ_P0037696 Gtf2h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037697.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101127584 101169827 - MGP_C3HHeJ_P0037697 Gtf2h2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037698.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101135744 101169833 - MGP_C3HHeJ_P0037698 Gtf2h2 protein_coding protein_coding MGP_C3HHeJ_T0037699.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101135972 101169639 - Gtf2h2 protein_coding retained_intron MGP_C3HHeJ_T0037700.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101135972 101169851 - MGP_C3HHeJ_P0037700 Gtf2h2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037701.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101154401 101158031 - Gtf2h2 protein_coding processed_transcript MGP_C3HHeJ_T0037702.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101156490 101158949 - Gtf2h2 protein_coding processed_transcript MGP_C3HHeJ_T0037703.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101158828 101169851 - MGP_C3HHeJ_P0037703 Gtf2h2 protein_coding protein_coding MGP_C3HHeJ_T0037704.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101164971 101169646 - Gtf2h2 protein_coding retained_intron MGP_C3HHeJ_T0037705.1 MGP_C3HHeJ_G0020626.1 mouse_genomes_project 13 101166058 101169825 - Gtf2h2 protein_coding processed_transcript MGP_C3HHeJ_T0036695.1 MGP_C3HHeJ_G0020293.1 mouse_genomes_project 13 48398116 48398356 - MGP_C3HHeJ_P0036695 protein_coding protein_coding MGP_C3HHeJ_T0100154.1 MGP_C3HHeJ_G0038348.1 mouse_genomes_project 13 64418295 64418446 + Gm24130 snoRNA snoRNA MGP_C3HHeJ_T0036177.1 MGP_C3HHeJ_G0020062.1 mouse_genomes_project 13 19347157 19347468 - MGP_C3HHeJ_P0036177 protein_coding protein_coding MGP_C3HHeJ_T0036324.1 MGP_C3HHeJ_G0020147.1 mouse_genomes_project 13 24806345 24812971 + MGP_C3HHeJ_P0036324 Prl6a1 protein_coding protein_coding MGP_C3HHeJ_T0036325.1 MGP_C3HHeJ_G0020147.1 mouse_genomes_project 13 24807664 24812971 + MGP_C3HHeJ_P0036325 Prl6a1 protein_coding protein_coding MGP_C3HHeJ_T0036367.1 MGP_C3HHeJ_G0020167.1 mouse_genomes_project 13 28295356 28300404 - MGP_C3HHeJ_P0036367 Uqcrfs1 protein_coding protein_coding MGP_C3HHeJ_T0037069.1 MGP_C3HHeJ_G0020395.1 mouse_genomes_project 13 59230251 59231253 + MGP_C3HHeJ_P0037069 Gm5084 protein_coding protein_coding MGP_C3HHeJ_T0036328.1 MGP_C3HHeJ_G0020149.1 mouse_genomes_project 13 24884804 24895269 - MGP_C3HHeJ_P0036328 Prl2b1 protein_coding protein_coding MGP_C3HHeJ_T0036329.1 MGP_C3HHeJ_G0020149.1 mouse_genomes_project 13 24884804 24895269 - MGP_C3HHeJ_P0036329 Prl2b1 protein_coding protein_coding MGP_C3HHeJ_T0036406.1 MGP_C3HHeJ_G0020190.1 mouse_genomes_project 13 31660980 31671992 - MGP_C3HHeJ_P0036406 Serpinb6e protein_coding protein_coding MGP_C3HHeJ_T0036407.1 MGP_C3HHeJ_G0020190.1 mouse_genomes_project 13 31669586 31671992 - MGP_C3HHeJ_P0036407 Serpinb6e protein_coding protein_coding MGP_C3HHeJ_T0003407.1 MGP_C3HHeJ_G0003119.1 mouse_genomes_project 13 73770996 73772190 - Gm15912 antisense antisense MGP_C3HHeJ_T0037543.1 MGP_C3HHeJ_G0020571.1 mouse_genomes_project 13 93966904 93984768 - MGP_C3HHeJ_P0037543 Bhmt2 protein_coding protein_coding MGP_C3HHeJ_T0037199.1 MGP_C3HHeJ_G0020458.1 mouse_genomes_project 13 66927422 66954972 - MGP_C3HHeJ_P0037199 protein_coding protein_coding MGP_C3HHeJ_T0036207.1 MGP_C3HHeJ_G0020092.1 mouse_genomes_project 13 20697823 20714474 - MGP_C3HHeJ_P0036207 Zfp322a protein_coding protein_coding MGP_C3HHeJ_T0036208.1 MGP_C3HHeJ_G0020092.1 mouse_genomes_project 13 20702296 20714266 - MGP_C3HHeJ_P0036208 Zfp322a protein_coding protein_coding MGP_C3HHeJ_T0036209.1 MGP_C3HHeJ_G0020092.1 mouse_genomes_project 13 20702297 20714467 - MGP_C3HHeJ_P0036209 Zfp322a protein_coding protein_coding MGP_C3HHeJ_T0036210.1 MGP_C3HHeJ_G0020092.1 mouse_genomes_project 13 20702458 20714460 - MGP_C3HHeJ_P0036210 Zfp322a protein_coding protein_coding MGP_C3HHeJ_T0036635.1 MGP_C3HHeJ_G0020271.1 mouse_genomes_project 13 46607720 46610330 + MGP_C3HHeJ_P0036635 Id4 protein_coding protein_coding MGP_C3HHeJ_T0037587.1 MGP_C3HHeJ_G0020586.1 mouse_genomes_project 13 95892996 95906164 - MGP_C3HHeJ_P0037587 F2rl1 protein_coding protein_coding MGP_C3HHeJ_T0037425.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85213027 85237221 + MGP_C3HHeJ_P0037425 Ccnh protein_coding protein_coding MGP_C3HHeJ_T0037426.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85213054 85225949 + MGP_C3HHeJ_P0037426 Ccnh protein_coding protein_coding MGP_C3HHeJ_T0037427.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85213067 85236105 + MGP_C3HHeJ_P0037427 Ccnh protein_coding protein_coding MGP_C3HHeJ_T0037428.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85213096 85236404 + MGP_C3HHeJ_P0037428 Ccnh protein_coding protein_coding MGP_C3HHeJ_T0037429.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85225936 85246990 + MGP_C3HHeJ_P0037429 Ccnh protein_coding protein_coding MGP_C3HHeJ_T0037430.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85234815 85236603 + Ccnh protein_coding processed_transcript MGP_C3HHeJ_T0037431.1 MGP_C3HHeJ_G0020539.1 mouse_genomes_project 13 85235277 85236399 + Ccnh protein_coding retained_intron MGP_C3HHeJ_T0036602.1 MGP_C3HHeJ_G0020261.1 mouse_genomes_project 13 44681524 44695193 + MGP_C3HHeJ_P0036602 Rbm24 protein_coding protein_coding MGP_C3HHeJ_T0037588.1 MGP_C3HHeJ_G0020587.1 mouse_genomes_project 13 95983277 95999853 - MGP_C3HHeJ_P0037588 F2r protein_coding protein_coding MGP_C3HHeJ_T0036831.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570017 53573389 + MGP_C3HHeJ_P0036831 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036832.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570020 53572877 + MGP_C3HHeJ_P0036832 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036833.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570020 53573483 + MGP_C3HHeJ_P0036833 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036834.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570020 53572667 + MGP_C3HHeJ_P0036834 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036835.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570020 53573389 + MGP_C3HHeJ_P0036835 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036836.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570022 53573390 + MGP_C3HHeJ_P0036836 Eif4e1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036837.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570022 53573398 + MGP_C3HHeJ_P0036837 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036838.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570022 53575304 + MGP_C3HHeJ_P0036838 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036839.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570032 53575296 + MGP_C3HHeJ_P0036839 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0036840.1 MGP_C3HHeJ_G0020329.1 mouse_genomes_project 13 53570039 53573490 + MGP_C3HHeJ_P0036840 Eif4e1b protein_coding protein_coding MGP_C3HHeJ_T0006473.1 MGP_C3HHeJ_G0005366.1 mouse_genomes_project 13 36947364 36953045 + 5033403F01Rik lincRNA lincRNA MGP_C3HHeJ_T0037894.1 MGP_C3HHeJ_G0020677.1 mouse_genomes_project 13 113705207 113760159 - MGP_C3HHeJ_P0037894 Ddx4 protein_coding protein_coding MGP_C3HHeJ_T0037895.1 MGP_C3HHeJ_G0020677.1 mouse_genomes_project 13 113705207 113760159 - MGP_C3HHeJ_P0037895 Ddx4 protein_coding protein_coding MGP_C3HHeJ_T0037799.1 MGP_C3HHeJ_G0020653.1 mouse_genomes_project 13 105921773 105967402 + MGP_C3HHeJ_P0037799 4933425L06Rik protein_coding protein_coding MGP_C3HHeJ_T0012792.1 MGP_C3HHeJ_G0010896.1 mouse_genomes_project 13 43379468 43380471 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037791.1 MGP_C3HHeJ_G0020650.1 mouse_genomes_project 13 105618534 105668276 + Srek1ip1 protein_coding processed_transcript MGP_C3HHeJ_T0037793.1 MGP_C3HHeJ_G0020650.1 mouse_genomes_project 13 105643225 105669190 + MGP_C3HHeJ_P0037793 Srek1ip1 protein_coding protein_coding MGP_C3HHeJ_T0037794.1 MGP_C3HHeJ_G0020650.1 mouse_genomes_project 13 105643287 105668585 + MGP_C3HHeJ_P0037794 Srek1ip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037795.1 MGP_C3HHeJ_G0020650.1 mouse_genomes_project 13 105652707 105663725 + Srek1ip1 protein_coding retained_intron MGP_C3HHeJ_T0037796.1 MGP_C3HHeJ_G0020650.1 mouse_genomes_project 13 105663501 105669187 + Srek1ip1 protein_coding retained_intron MGP_C3HHeJ_T0035975.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6527920 6580246 - MGP_C3HHeJ_P0035975 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035976.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6527929 6534362 - Zmynd11 protein_coding retained_intron MGP_C3HHeJ_T0035977.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6532227 6533599 - Zmynd11 protein_coding retained_intron MGP_C3HHeJ_T0035978.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6536563 6539228 - Zmynd11 protein_coding retained_intron MGP_C3HHeJ_T0035979.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6537375 6609517 - MGP_C3HHeJ_P0035979 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035980.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6538221 6608690 - MGP_C3HHeJ_P0035980 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035981.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6540732 6609568 - MGP_C3HHeJ_P0035981 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035982.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6540732 6609184 - MGP_C3HHeJ_P0035982 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035983.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6540751 6580575 - Zmynd11 protein_coding processed_transcript MGP_C3HHeJ_T0035984.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6540788 6580217 - Zmynd11 protein_coding processed_transcript MGP_C3HHeJ_T0035985.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6540791 6608664 - MGP_C3HHeJ_P0035985 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035986.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6541746 6580683 - MGP_C3HHeJ_P0035986 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0035987.1 MGP_C3HHeJ_G0019968.1 mouse_genomes_project 13 6553646 6608700 - MGP_C3HHeJ_P0035987 Zmynd11 protein_coding protein_coding MGP_C3HHeJ_T0037097.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62544767 62644476 - MGP_C3HHeJ_P0037097 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037098.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62544772 62550396 - Fancc protein_coding processed_transcript MGP_C3HHeJ_T0037099.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62544773 62672536 - MGP_C3HHeJ_P0037099 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037100.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62545514 62558019 - Fancc protein_coding processed_transcript MGP_C3HHeJ_T0037101.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62549500 62672533 - Fancc protein_coding retained_intron MGP_C3HHeJ_T0037102.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62554299 62564865 - Fancc protein_coding processed_transcript MGP_C3HHeJ_T0037103.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62563539 62585149 - Fancc protein_coding processed_transcript MGP_C3HHeJ_T0037104.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62563539 62672556 - Fancc protein_coding retained_intron MGP_C3HHeJ_T0037105.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62573366 62638517 - MGP_C3HHeJ_P0037105 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037106.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62580398 62671396 - MGP_C3HHeJ_P0037106 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037107.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62580449 62646524 - MGP_C3HHeJ_P0037107 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037108.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62580458 62638644 - Fancc protein_coding retained_intron MGP_C3HHeJ_T0037109.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62580488 62730717 - MGP_C3HHeJ_P0037109 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037110.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62643226 62672494 - MGP_C3HHeJ_P0037110 Fancc protein_coding protein_coding MGP_C3HHeJ_T0037111.1 MGP_C3HHeJ_G0020416.1 mouse_genomes_project 13 62643283 62650016 - MGP_C3HHeJ_P0037111 Fancc protein_coding protein_coding MGP_C3HHeJ_T0006484.1 MGP_C3HHeJ_G0005374.1 mouse_genomes_project 13 46374718 46608917 - A330033J07Rik lincRNA lincRNA MGP_C3HHeJ_T0006485.1 MGP_C3HHeJ_G0005374.1 mouse_genomes_project 13 46585347 46608375 - A330033J07Rik lincRNA lincRNA MGP_C3HHeJ_T0037056.1 MGP_C3HHeJ_G0020388.1 mouse_genomes_project 13 58627873 58668969 - MGP_C3HHeJ_P0037056 Golm1 protein_coding protein_coding MGP_C3HHeJ_T0037057.1 MGP_C3HHeJ_G0020388.1 mouse_genomes_project 13 58627873 58668969 - MGP_C3HHeJ_P0037057 Golm1 protein_coding protein_coding MGP_C3HHeJ_T0012771.1 MGP_C3HHeJ_G0010875.1 mouse_genomes_project 13 23631364 23631881 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037595.1 MGP_C3HHeJ_G0020592.1 mouse_genomes_project 13 96810706 96838041 + MGP_C3HHeJ_P0037595 Poc5 protein_coding protein_coding MGP_C3HHeJ_T0036940.1 MGP_C3HHeJ_G0020360.1 mouse_genomes_project 13 54628517 54658005 + MGP_C3HHeJ_P0036940 Catsper3 protein_coding protein_coding MGP_C3HHeJ_T0036941.1 MGP_C3HHeJ_G0020360.1 mouse_genomes_project 13 54628528 54658036 + MGP_C3HHeJ_P0036941 Catsper3 protein_coding protein_coding MGP_C3HHeJ_T0036476.1 MGP_C3HHeJ_G0020212.1 mouse_genomes_project 13 34599748 34609169 - MGP_C3HHeJ_P0036476 Nrn1 protein_coding protein_coding MGP_C3HHeJ_T0036477.1 MGP_C3HHeJ_G0020212.1 mouse_genomes_project 13 34600581 34605369 - MGP_C3HHeJ_P0036477 Nrn1 protein_coding protein_coding MGP_C3HHeJ_T0100156.1 MGP_C3HHeJ_G0038350.1 mouse_genomes_project 13 75571002 75571085 + Gm23012 snoRNA snoRNA MGP_C3HHeJ_T0011268.1 MGP_C3HHeJ_G0009401.1 mouse_genomes_project 13 109448761 109449017 - Gm27572 misc_RNA misc_RNA MGP_C3HHeJ_T0036953.1 MGP_C3HHeJ_G0020364.1 mouse_genomes_project 13 55117645 55119310 - MGP_C3HHeJ_P0036953 Neurog1 protein_coding protein_coding MGP_C3HHeJ_T0036234.1 MGP_C3HHeJ_G0020111.1 mouse_genomes_project 13 21074996 21081865 - MGP_C3HHeJ_P0036234 Hfe protein_coding protein_coding MGP_C3HHeJ_T0036235.1 MGP_C3HHeJ_G0020111.1 mouse_genomes_project 13 21075540 21081865 - MGP_C3HHeJ_P0036235 Hfe protein_coding protein_coding MGP_C3HHeJ_T0036236.1 MGP_C3HHeJ_G0020111.1 mouse_genomes_project 13 21075540 21081865 - MGP_C3HHeJ_P0036236 Hfe protein_coding protein_coding MGP_C3HHeJ_T0037444.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997495 89389220 + MGP_C3HHeJ_P0037444 Edil3 protein_coding protein_coding MGP_C3HHeJ_T0037445.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997511 89319090 + Edil3 protein_coding processed_transcript MGP_C3HHeJ_T0037446.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997534 89516697 + MGP_C3HHeJ_P0037446 Edil3 protein_coding protein_coding MGP_C3HHeJ_T0037447.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997580 89158695 + Edil3 protein_coding retained_intron MGP_C3HHeJ_T0037448.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997583 89006157 + Edil3 protein_coding processed_transcript MGP_C3HHeJ_T0037449.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997637 89227622 + Edil3 protein_coding retained_intron MGP_C3HHeJ_T0037450.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997641 89280335 + Edil3 protein_coding retained_intron MGP_C3HHeJ_T0037451.1 MGP_C3HHeJ_G0020542.1 mouse_genomes_project 13 88997665 89516697 + MGP_C3HHeJ_P0037451 Edil3 protein_coding protein_coding MGP_C3HHeJ_T0012768.1 MGP_C3HHeJ_G0010872.1 mouse_genomes_project 13 22993056 22994172 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009860.1 MGP_C3HHeJ_G0007993.1 mouse_genomes_project 13 62533092 62533166 + Mir23b miRNA miRNA MGP_C3HHeJ_T0006513.1 MGP_C3HHeJ_G0005392.1 mouse_genomes_project 13 68794865 68796861 + Gm26844 lincRNA lincRNA MGP_C3HHeJ_T0037967.1 MGP_C3HHeJ_G0020713.1 mouse_genomes_project 13 121015753 121054661 + MGP_C3HHeJ_P0037967 Ccl28 protein_coding protein_coding MGP_C3HHeJ_T0009862.1 MGP_C3HHeJ_G0007995.1 mouse_genomes_project 13 62533807 62533892 - Mir3074-1 miRNA miRNA MGP_C3HHeJ_T0006547.1 MGP_C3HHeJ_G0005415.1 mouse_genomes_project 13 99715050 99721704 + Gm807 lincRNA lincRNA MGP_C3HHeJ_T0037193.1 MGP_C3HHeJ_G0020453.1 mouse_genomes_project 13 66769089 66824729 - MGP_C3HHeJ_P0037193 Gm28044 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037194.1 MGP_C3HHeJ_G0020453.1 mouse_genomes_project 13 66771312 66809884 - Gm28044 protein_coding processed_transcript MGP_C3HHeJ_T0012823.1 MGP_C3HHeJ_G0010927.1 mouse_genomes_project 13 92562978 92563227 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101130.1 MGP_C3HHeJ_G0039298.1 mouse_genomes_project 13 31862421 31866505 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101131.1 MGP_C3HHeJ_G0039298.1 mouse_genomes_project 13 31863838 31864395 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0012821.1 MGP_C3HHeJ_G0010925.1 mouse_genomes_project 13 88315242 88316038 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037589.1 MGP_C3HHeJ_G0020588.1 mouse_genomes_project 13 96008524 96289411 - MGP_C3HHeJ_P0037589 Iqgap2 protein_coding protein_coding MGP_C3HHeJ_T0037620.1 MGP_C3HHeJ_G0020599.1 mouse_genomes_project 13 97495046 97507445 - MGP_C3HHeJ_P0037620 1700029F12Rik protein_coding protein_coding MGP_C3HHeJ_T0003378.1 MGP_C3HHeJ_G0003101.1 mouse_genomes_project 13 39895181 39896194 + 1700061E18Rik antisense antisense MGP_C3HHeJ_T0000842.1 MGP_C3HHeJ_G0000783.1 mouse_genomes_project 13 15197993 15203455 + TEC TEC MGP_C3HHeJ_T0098031.1 MGP_C3HHeJ_G0036243.1 mouse_genomes_project 13 104184990 104185095 + n-R5s56 rRNA rRNA MGP_C3HHeJ_T0036014.1 MGP_C3HHeJ_G0019984.1 mouse_genomes_project 13 10758628 10951723 + MGP_C3HHeJ_P0036014 Lyst protein_coding protein_coding MGP_C3HHeJ_T0037296.1 MGP_C3HHeJ_G0020503.1 mouse_genomes_project 13 73751286 73751472 - MGP_C3HHeJ_P0037296 Gm10126 protein_coding protein_coding MGP_C3HHeJ_T0012789.1 MGP_C3HHeJ_G0010893.1 mouse_genomes_project 13 32784892 32785878 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012763.1 MGP_C3HHeJ_G0010867.1 mouse_genomes_project 13 21683190 21683602 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037934.1 MGP_C3HHeJ_G0020698.1 mouse_genomes_project 13 116155956 116308153 - MGP_C3HHeJ_P0037934 Itga1 protein_coding protein_coding MGP_C3HHeJ_T0035964.1 MGP_C3HHeJ_G0019965.1 mouse_genomes_project 13 5778003 5802871 - MGP_C3HHeJ_P0035964 Gtpbp4 protein_coding protein_coding MGP_C3HHeJ_T0009876.1 MGP_C3HHeJ_G0008009.1 mouse_genomes_project 13 99144023 99144125 + Gm22698 miRNA miRNA MGP_C3HHeJ_T0011251.1 MGP_C3HHeJ_G0009384.1 mouse_genomes_project 13 10546795 10547059 + Gm24065 misc_RNA misc_RNA MGP_C3HHeJ_T0036425.1 MGP_C3HHeJ_G0020193.1 mouse_genomes_project 13 31792015 31815414 + MGP_C3HHeJ_P0036425 Nqo2 protein_coding protein_coding MGP_C3HHeJ_T0036426.1 MGP_C3HHeJ_G0020193.1 mouse_genomes_project 13 31792015 31815414 + MGP_C3HHeJ_P0036426 Nqo2 protein_coding protein_coding MGP_C3HHeJ_T0037013.1 MGP_C3HHeJ_G0020384.1 mouse_genomes_project 13 57503096 57516887 - MGP_C3HHeJ_P0037013 Slc28a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037014.1 MGP_C3HHeJ_G0020384.1 mouse_genomes_project 13 57511001 57570312 - MGP_C3HHeJ_P0037014 Slc28a3 protein_coding protein_coding MGP_C3HHeJ_T0037015.1 MGP_C3HHeJ_G0020384.1 mouse_genomes_project 13 57540389 57570312 - MGP_C3HHeJ_P0037015 Slc28a3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037016.1 MGP_C3HHeJ_G0020384.1 mouse_genomes_project 13 57544960 57570304 - Slc28a3 protein_coding retained_intron MGP_C3HHeJ_T0036389.1 MGP_C3HHeJ_G0020179.1 mouse_genomes_project 13 30615210 30635485 + MGP_C3HHeJ_P0036389 Wrnip1 protein_coding protein_coding MGP_C3HHeJ_T0100146.1 MGP_C3HHeJ_G0038340.1 mouse_genomes_project 13 45264724 45264853 + Gm24769 snoRNA snoRNA MGP_C3HHeJ_T0009831.1 MGP_C3HHeJ_G0007964.1 mouse_genomes_project 13 19190636 19190768 - Mir1983 miRNA miRNA MGP_C3HHeJ_T0037165.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66329191 66340469 - MGP_C3HHeJ_P0037165 Mterf3 protein_coding protein_coding MGP_C3HHeJ_T0037166.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66335956 66356906 - MGP_C3HHeJ_P0037166 Mterf3 protein_coding protein_coding MGP_C3HHeJ_T0037167.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66335964 66356885 - MGP_C3HHeJ_P0037167 Mterf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037168.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66336075 66343501 - Mterf3 protein_coding processed_transcript MGP_C3HHeJ_T0037169.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66340881 66356526 - MGP_C3HHeJ_P0037169 Mterf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037170.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66340911 66354041 - MGP_C3HHeJ_P0037170 Mterf3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037171.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66346638 66356722 - MGP_C3HHeJ_P0037171 Mterf3 protein_coding protein_coding MGP_C3HHeJ_T0037172.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66352089 66354103 - MGP_C3HHeJ_P0037172 Mterf3 protein_coding protein_coding MGP_C3HHeJ_T0037173.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66353811 66356856 - MGP_C3HHeJ_P0037173 Mterf3 protein_coding protein_coding MGP_C3HHeJ_T0037174.1 MGP_C3HHeJ_G0020440.1 mouse_genomes_project 13 66355004 66356859 - Mterf3 protein_coding processed_transcript MGP_C3HHeJ_T0037915.1 MGP_C3HHeJ_G0020690.1 mouse_genomes_project 13 114414938 114493084 + MGP_C3HHeJ_P0037915 BC067074 protein_coding protein_coding MGP_C3HHeJ_T0037916.1 MGP_C3HHeJ_G0020690.1 mouse_genomes_project 13 114461550 114494082 + MGP_C3HHeJ_P0037916 BC067074 protein_coding protein_coding MGP_C3HHeJ_T0037917.1 MGP_C3HHeJ_G0020690.1 mouse_genomes_project 13 114471453 114505934 + MGP_C3HHeJ_P0037917 BC067074 protein_coding protein_coding MGP_C3HHeJ_T0037363.1 MGP_C3HHeJ_G0020530.1 mouse_genomes_project 13 78044193 78056630 - MGP_C3HHeJ_P0037363 Nr2f1 protein_coding protein_coding MGP_C3HHeJ_T0037364.1 MGP_C3HHeJ_G0020530.1 mouse_genomes_project 13 78044372 78052258 - MGP_C3HHeJ_P0037364 Nr2f1 protein_coding protein_coding MGP_C3HHeJ_T0037365.1 MGP_C3HHeJ_G0020530.1 mouse_genomes_project 13 78044884 78053152 - MGP_C3HHeJ_P0037365 Nr2f1 protein_coding protein_coding MGP_C3HHeJ_T0037366.1 MGP_C3HHeJ_G0020530.1 mouse_genomes_project 13 78044945 78051588 - MGP_C3HHeJ_P0037366 Nr2f1 protein_coding protein_coding MGP_C3HHeJ_T0037367.1 MGP_C3HHeJ_G0020530.1 mouse_genomes_project 13 78045084 78045656 - Nr2f1 protein_coding processed_transcript MGP_C3HHeJ_T0012820.1 MGP_C3HHeJ_G0010924.1 mouse_genomes_project 13 87906020 87907026 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012746.1 MGP_C3HHeJ_G0010850.1 mouse_genomes_project 13 18544911 18545382 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012807.1 MGP_C3HHeJ_G0010911.1 mouse_genomes_project 13 69446912 69447201 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0035991.1 MGP_C3HHeJ_G0019970.1 mouse_genomes_project 13 8432176 9010382 - MGP_C3HHeJ_P0035991 Ryr2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0035992.1 MGP_C3HHeJ_G0019970.1 mouse_genomes_project 13 8432186 9010881 - MGP_C3HHeJ_P0035992 Ryr2 protein_coding protein_coding MGP_C3HHeJ_T0035993.1 MGP_C3HHeJ_G0019970.1 mouse_genomes_project 13 8432186 9010881 - MGP_C3HHeJ_P0035993 Ryr2 protein_coding protein_coding MGP_C3HHeJ_T0036715.1 MGP_C3HHeJ_G0020301.1 mouse_genomes_project 13 50305822 50340755 + MGP_C3HHeJ_P0036715 Secisbp2 protein_coding protein_coding MGP_C3HHeJ_T0036716.1 MGP_C3HHeJ_G0020301.1 mouse_genomes_project 13 50305866 50322131 + MGP_C3HHeJ_P0036716 Secisbp2 protein_coding protein_coding MGP_C3HHeJ_T0036717.1 MGP_C3HHeJ_G0020301.1 mouse_genomes_project 13 50305922 50312177 + Secisbp2 protein_coding processed_transcript MGP_C3HHeJ_T0036718.1 MGP_C3HHeJ_G0020301.1 mouse_genomes_project 13 50305922 50321220 + Secisbp2 protein_coding processed_transcript MGP_C3HHeJ_T0036719.1 MGP_C3HHeJ_G0020301.1 mouse_genomes_project 13 50336443 50339240 + Secisbp2 protein_coding retained_intron MGP_C3HHeJ_T0036720.1 MGP_C3HHeJ_G0020301.1 mouse_genomes_project 13 50338483 50340200 + Secisbp2 protein_coding retained_intron MGP_C3HHeJ_T0036200.1 MGP_C3HHeJ_G0020085.1 mouse_genomes_project 13 20333625 20334528 + MGP_C3HHeJ_P0036200 Vmn1r215 protein_coding protein_coding MGP_C3HHeJ_T0009828.1 MGP_C3HHeJ_G0007961.1 mouse_genomes_project 13 18644886 18644947 - Mir6942 miRNA miRNA MGP_C3HHeJ_T0006510.1 MGP_C3HHeJ_G0005390.1 mouse_genomes_project 13 67058822 67066398 + 9430065F17Rik lincRNA lincRNA MGP_C3HHeJ_T0006511.1 MGP_C3HHeJ_G0005390.1 mouse_genomes_project 13 67058851 67068189 + 9430065F17Rik lincRNA lincRNA MGP_C3HHeJ_T0037512.1 MGP_C3HHeJ_G0020559.1 mouse_genomes_project 13 92704255 92719805 + MGP_C3HHeJ_P0037512 Ankrd34b protein_coding protein_coding MGP_C3HHeJ_T0037513.1 MGP_C3HHeJ_G0020559.1 mouse_genomes_project 13 92704700 92716506 + MGP_C3HHeJ_P0037513 Ankrd34b protein_coding protein_coding MGP_C3HHeJ_T0037514.1 MGP_C3HHeJ_G0020559.1 mouse_genomes_project 13 92705017 92719077 + MGP_C3HHeJ_P0037514 Ankrd34b protein_coding protein_coding MGP_C3HHeJ_T0037060.1 MGP_C3HHeJ_G0020391.1 mouse_genomes_project 13 58742998 58747078 - MGP_C3HHeJ_P0037060 1700014D04Rik protein_coding protein_coding MGP_C3HHeJ_T0037061.1 MGP_C3HHeJ_G0020391.1 mouse_genomes_project 13 58744112 58744907 - MGP_C3HHeJ_P0037061 1700014D04Rik protein_coding protein_coding MGP_C3HHeJ_T0037062.1 MGP_C3HHeJ_G0020391.1 mouse_genomes_project 13 58745863 58748901 - MGP_C3HHeJ_P0037062 1700014D04Rik protein_coding protein_coding MGP_C3HHeJ_T0036204.1 MGP_C3HHeJ_G0020089.1 mouse_genomes_project 13 20432658 20434739 + MGP_C3HHeJ_P0036204 Vmn1r219 protein_coding protein_coding MGP_C3HHeJ_T0037771.1 MGP_C3HHeJ_G0020642.1 mouse_genomes_project 13 104820129 104907755 - MGP_C3HHeJ_P0037771 Nln protein_coding protein_coding MGP_C3HHeJ_T0012760.1 MGP_C3HHeJ_G0010864.1 mouse_genomes_project 13 20726954 20727110 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000855.1 MGP_C3HHeJ_G0000795.1 mouse_genomes_project 13 70771636 70775829 - TEC TEC MGP_C3HHeJ_T0012826.1 MGP_C3HHeJ_G0010930.1 mouse_genomes_project 13 97956636 97958091 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006559.1 MGP_C3HHeJ_G0005426.1 mouse_genomes_project 13 112930589 112935558 + Gm15326 lincRNA lincRNA MGP_C3HHeJ_T0006560.1 MGP_C3HHeJ_G0005426.1 mouse_genomes_project 13 112934760 112938351 + Gm15326 lincRNA lincRNA MGP_C3HHeJ_T0037637.1 MGP_C3HHeJ_G0020604.1 mouse_genomes_project 13 98451772 98769868 - MGP_C3HHeJ_P0037637 Arhgef28 protein_coding protein_coding MGP_C3HHeJ_T0036203.1 MGP_C3HHeJ_G0020088.1 mouse_genomes_project 13 20406411 20407308 + MGP_C3HHeJ_P0036203 Vmn1r218 protein_coding protein_coding MGP_C3HHeJ_T0036005.1 MGP_C3HHeJ_G0019975.1 mouse_genomes_project 13 9389612 9446276 - MGP_C3HHeJ_P0036005 Edaradd protein_coding protein_coding MGP_C3HHeJ_T0037900.1 MGP_C3HHeJ_G0020681.1 mouse_genomes_project 13 114049969 114092341 + MGP_C3HHeJ_P0037900 Dhx29 protein_coding protein_coding MGP_C3HHeJ_T0036303.1 MGP_C3HHeJ_G0020136.1 mouse_genomes_project 13 22348235 22401292 + MGP_C3HHeJ_P0036303 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036304.1 MGP_C3HHeJ_G0020136.1 mouse_genomes_project 13 22366074 22373998 + protein_coding processed_transcript MGP_C3HHeJ_T0036305.1 MGP_C3HHeJ_G0020136.1 mouse_genomes_project 13 22390548 22401923 + MGP_C3HHeJ_P0036305 protein_coding protein_coding MGP_C3HHeJ_T0036348.1 MGP_C3HHeJ_G0020162.1 mouse_genomes_project 13 26664784 26669566 - MGP_C3HHeJ_P0036348 Sox4 protein_coding protein_coding MGP_C3HHeJ_T0003384.1 MGP_C3HHeJ_G0003107.1 mouse_genomes_project 13 53563551 53569111 - Gm16249 antisense antisense MGP_C3HHeJ_T0000856.1 MGP_C3HHeJ_G0000796.1 mouse_genomes_project 13 79198752 79199214 - TEC TEC MGP_C3HHeJ_T0037918.1 MGP_C3HHeJ_G0020691.1 mouse_genomes_project 13 114726458 114753808 - MGP_C3HHeJ_P0037918 Snx18 protein_coding protein_coding MGP_C3HHeJ_T0098361.1 MGP_C3HHeJ_G0036569.1 mouse_genomes_project 13 26969786 26970630 - Gm11364 sense_intronic sense_intronic MGP_C3HHeJ_T0037086.1 MGP_C3HHeJ_G0020409.1 mouse_genomes_project 13 60408527 60414207 - MGP_C3HHeJ_P0037086 Cts7 protein_coding protein_coding MGP_C3HHeJ_T0037656.1 MGP_C3HHeJ_G0020612.1 mouse_genomes_project 13 99286007 99294612 - MGP_C3HHeJ_P0037656 Tmem171 protein_coding protein_coding MGP_C3HHeJ_T0037657.1 MGP_C3HHeJ_G0020612.1 mouse_genomes_project 13 99292094 99294546 - MGP_C3HHeJ_P0037657 Tmem171 protein_coding protein_coding MGP_C3HHeJ_T0035884.1 MGP_C3HHeJ_G0019936.1 mouse_genomes_project 13 174945 208956 + MGP_C3HHeJ_P0035884 Gdi2 protein_coding protein_coding MGP_C3HHeJ_T0036925.1 MGP_C3HHeJ_G0020353.1 mouse_genomes_project 13 54424737 54429267 + MGP_C3HHeJ_P0036925 Tmed9 protein_coding protein_coding MGP_C3HHeJ_T0037441.1 MGP_C3HHeJ_G0020541.1 mouse_genomes_project 13 86105954 86107584 - MGP_C3HHeJ_P0037441 Cox7c protein_coding protein_coding MGP_C3HHeJ_T0037442.1 MGP_C3HHeJ_G0020541.1 mouse_genomes_project 13 86105954 86109617 - MGP_C3HHeJ_P0037442 Cox7c protein_coding protein_coding MGP_C3HHeJ_T0037443.1 MGP_C3HHeJ_G0020541.1 mouse_genomes_project 13 86105959 86107471 - MGP_C3HHeJ_P0037443 Cox7c protein_coding protein_coding MGP_C3HHeJ_T0037274.1 MGP_C3HHeJ_G0020494.1 mouse_genomes_project 13 73348071 73364709 + MGP_C3HHeJ_P0037274 Clptm1l protein_coding protein_coding MGP_C3HHeJ_T0006500.1 MGP_C3HHeJ_G0005382.1 mouse_genomes_project 13 53675231 53675775 + Gm29431 lincRNA lincRNA MGP_C3HHeJ_T0000870.1 MGP_C3HHeJ_G0000810.1 mouse_genomes_project 13 102888451 102890385 - TEC TEC MGP_C3HHeJ_T0036771.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53278843 53327575 + MGP_C3HHeJ_P0036771 Simc1 protein_coding protein_coding MGP_C3HHeJ_T0036772.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53278843 53327575 + MGP_C3HHeJ_P0036772 Simc1 protein_coding protein_coding MGP_C3HHeJ_T0036773.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53280243 53317903 + MGP_C3HHeJ_P0036773 Simc1 protein_coding protein_coding MGP_C3HHeJ_T0036774.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53280248 53317902 + MGP_C3HHeJ_P0036774 Simc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036775.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53288566 53300730 + Simc1 protein_coding processed_transcript MGP_C3HHeJ_T0036776.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53305407 53318019 + Simc1 protein_coding retained_intron MGP_C3HHeJ_T0036777.1 MGP_C3HHeJ_G0020318.1 mouse_genomes_project 13 53323166 53327071 + Simc1 protein_coding retained_intron MGP_C3HHeJ_T0037602.1 MGP_C3HHeJ_G0020594.1 mouse_genomes_project 13 96903496 96969522 - MGP_C3HHeJ_P0037602 Polk protein_coding protein_coding MGP_C3HHeJ_T0037603.1 MGP_C3HHeJ_G0020594.1 mouse_genomes_project 13 96904981 96945460 - MGP_C3HHeJ_P0037603 Polk protein_coding protein_coding MGP_C3HHeJ_T0036408.1 MGP_C3HHeJ_G0020191.1 mouse_genomes_project 13 31700202 31721501 - MGP_C3HHeJ_P0036408 Serpinb6c protein_coding protein_coding MGP_C3HHeJ_T0036409.1 MGP_C3HHeJ_G0020191.1 mouse_genomes_project 13 31700203 31722039 - MGP_C3HHeJ_P0036409 Serpinb6c protein_coding protein_coding MGP_C3HHeJ_T0009865.1 MGP_C3HHeJ_G0007998.1 mouse_genomes_project 13 73684562 73684688 - Gm25197 miRNA miRNA MGP_C3HHeJ_T0100168.1 MGP_C3HHeJ_G0038362.1 mouse_genomes_project 13 95706437 95706569 + Gm22661 snoRNA snoRNA MGP_C3HHeJ_T0003380.1 MGP_C3HHeJ_G0003103.1 mouse_genomes_project 13 40926222 40931927 - Gm15810 antisense antisense MGP_C3HHeJ_T0036936.1 MGP_C3HHeJ_G0020357.1 mouse_genomes_project 13 54533406 54545153 + MGP_C3HHeJ_P0036936 B230219D22Rik protein_coding protein_coding MGP_C3HHeJ_T0037784.1 MGP_C3HHeJ_G0020646.1 mouse_genomes_project 13 105006147 105029725 - MGP_C3HHeJ_P0037784 Ppwd1 protein_coding protein_coding MGP_C3HHeJ_T0037340.1 MGP_C3HHeJ_G0020522.1 mouse_genomes_project 13 75941577 75943716 - MGP_C3HHeJ_P0037340 Gpr150 protein_coding protein_coding MGP_C3HHeJ_T0037306.1 MGP_C3HHeJ_G0020508.1 mouse_genomes_project 13 73981024 74065743 - MGP_C3HHeJ_P0037306 Ahrr protein_coding protein_coding MGP_C3HHeJ_T0037307.1 MGP_C3HHeJ_G0020508.1 mouse_genomes_project 13 73983143 74065709 - MGP_C3HHeJ_P0037307 Ahrr protein_coding protein_coding MGP_C3HHeJ_T0037308.1 MGP_C3HHeJ_G0020508.1 mouse_genomes_project 13 73985972 74029353 - Ahrr protein_coding retained_intron MGP_C3HHeJ_T0037309.1 MGP_C3HHeJ_G0020508.1 mouse_genomes_project 13 73992945 74032475 - Ahrr protein_coding processed_transcript MGP_C3HHeJ_T0037310.1 MGP_C3HHeJ_G0020508.1 mouse_genomes_project 13 73994819 74033231 - Ahrr protein_coding processed_transcript MGP_C3HHeJ_T0037867.1 MGP_C3HHeJ_G0020671.1 mouse_genomes_project 13 112470444 112539344 - MGP_C3HHeJ_P0037867 Gpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037868.1 MGP_C3HHeJ_G0020671.1 mouse_genomes_project 13 112470696 112539261 - MGP_C3HHeJ_P0037868 Gpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037869.1 MGP_C3HHeJ_G0020671.1 mouse_genomes_project 13 112470922 112536535 - MGP_C3HHeJ_P0037869 Gpbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037870.1 MGP_C3HHeJ_G0020671.1 mouse_genomes_project 13 112484120 112499473 - Gpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0037871.1 MGP_C3HHeJ_G0020671.1 mouse_genomes_project 13 112486721 112499432 - Gpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0037872.1 MGP_C3HHeJ_G0020671.1 mouse_genomes_project 13 112486791 112499473 - Gpbp1 protein_coding retained_intron MGP_C3HHeJ_T0036368.1 MGP_C3HHeJ_G0020168.1 mouse_genomes_project 13 28414494 28471112 + MGP_C3HHeJ_P0036368 Dusp22 protein_coding protein_coding MGP_C3HHeJ_T0036369.1 MGP_C3HHeJ_G0020168.1 mouse_genomes_project 13 28414556 28466005 + MGP_C3HHeJ_P0036369 Dusp22 protein_coding protein_coding MGP_C3HHeJ_T0036370.1 MGP_C3HHeJ_G0020168.1 mouse_genomes_project 13 28414605 28468776 + MGP_C3HHeJ_P0036370 Dusp22 protein_coding protein_coding MGP_C3HHeJ_T0037826.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100871 109141111 + MGP_C3HHeJ_P0037826 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037827.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100878 109106718 + Ercc8 protein_coding retained_intron MGP_C3HHeJ_T0037828.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100878 109121881 + MGP_C3HHeJ_P0037828 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037829.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100878 109140728 + MGP_C3HHeJ_P0037829 Ercc8 protein_coding protein_coding MGP_C3HHeJ_T0037830.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100878 109118567 + MGP_C3HHeJ_P0037830 Ercc8 protein_coding protein_coding MGP_C3HHeJ_T0037831.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100894 109140728 + MGP_C3HHeJ_P0037831 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037832.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100911 109140720 + MGP_C3HHeJ_P0037832 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037833.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100915 109117076 + MGP_C3HHeJ_P0037833 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037834.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100943 109128597 + MGP_C3HHeJ_P0037834 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037835.1 MGP_C3HHeJ_G0020663.1 mouse_genomes_project 13 109100944 109123297 + MGP_C3HHeJ_P0037835 Ercc8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012800.1 MGP_C3HHeJ_G0010904.1 mouse_genomes_project 13 63792219 63793595 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006462.1 MGP_C3HHeJ_G0005358.1 mouse_genomes_project 13 29383812 29385014 + Gm11378 lincRNA lincRNA MGP_C3HHeJ_T0098910.1 MGP_C3HHeJ_G0037104.1 mouse_genomes_project 13 113382276 113382429 + Gm22768 snRNA snRNA MGP_C3HHeJ_T0009868.1 MGP_C3HHeJ_G0008001.1 mouse_genomes_project 13 83780809 83780881 + Mir9-2 miRNA miRNA MGP_C3HHeJ_T0037080.1 MGP_C3HHeJ_G0020404.1 mouse_genomes_project 13 60031474 60037102 - MGP_C3HHeJ_P0037080 Ctsj protein_coding protein_coding MGP_C3HHeJ_T0037164.1 MGP_C3HHeJ_G0020439.1 mouse_genomes_project 13 66326693 66332936 + MGP_C3HHeJ_P0037164 Gm10767 protein_coding protein_coding MGP_C3HHeJ_T0036694.1 MGP_C3HHeJ_G0020292.1 mouse_genomes_project 13 48338895 48344374 - MGP_C3HHeJ_P0036694 Gm8674 protein_coding protein_coding MGP_C3HHeJ_T0097856.1 MGP_C3HHeJ_G0036068.1 mouse_genomes_project 13 26536044 26536284 + pseudogene pseudogene MGP_C3HHeJ_T0012827.1 MGP_C3HHeJ_G0010931.1 mouse_genomes_project 13 101452231 101452540 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036527.1 MGP_C3HHeJ_G0020232.1 mouse_genomes_project 13 39108487 39160501 - MGP_C3HHeJ_P0036527 Mak protein_coding protein_coding MGP_C3HHeJ_T0036528.1 MGP_C3HHeJ_G0020232.1 mouse_genomes_project 13 39108487 39151261 - MGP_C3HHeJ_P0036528 Mak protein_coding protein_coding MGP_C3HHeJ_T0036529.1 MGP_C3HHeJ_G0020232.1 mouse_genomes_project 13 39108487 39160501 - MGP_C3HHeJ_P0036529 Mak protein_coding protein_coding MGP_C3HHeJ_T0100155.1 MGP_C3HHeJ_G0038349.1 mouse_genomes_project 13 69837574 69837702 + Gm26018 snoRNA snoRNA MGP_C3HHeJ_T0037922.1 MGP_C3HHeJ_G0020695.1 mouse_genomes_project 13 115622123 115630103 - MGP_C3HHeJ_P0037922 Fst protein_coding protein_coding MGP_C3HHeJ_T0037923.1 MGP_C3HHeJ_G0020695.1 mouse_genomes_project 13 115623284 115629959 - MGP_C3HHeJ_P0037923 Fst protein_coding unknown_likely_coding MGP_C3HHeJ_T0036184.1 MGP_C3HHeJ_G0020069.1 mouse_genomes_project 13 19581635 19582541 + MGP_C3HHeJ_P0036184 Vmn1r196 protein_coding protein_coding MGP_C3HHeJ_T0036766.1 MGP_C3HHeJ_G0020315.1 mouse_genomes_project 13 52952498 52983464 + MGP_C3HHeJ_P0036766 Hrh2 protein_coding protein_coding MGP_C3HHeJ_T0036786.1 MGP_C3HHeJ_G0020320.1 mouse_genomes_project 13 53354074 53360192 + MGP_C3HHeJ_P0036786 Arl10 protein_coding protein_coding MGP_C3HHeJ_T0036787.1 MGP_C3HHeJ_G0020320.1 mouse_genomes_project 13 53354106 53358080 + MGP_C3HHeJ_P0036787 Arl10 protein_coding protein_coding MGP_C3HHeJ_T0036788.1 MGP_C3HHeJ_G0020320.1 mouse_genomes_project 13 53357444 53357973 + Arl10 protein_coding processed_transcript MGP_C3HHeJ_T0036789.1 MGP_C3HHeJ_G0020320.1 mouse_genomes_project 13 53357875 53358601 + MGP_C3HHeJ_P0036789 Arl10 protein_coding protein_coding MGP_C3HHeJ_T0036192.1 MGP_C3HHeJ_G0020077.1 mouse_genomes_project 13 19891190 19892328 - MGP_C3HHeJ_P0036192 Vmn1r205 protein_coding protein_coding MGP_C3HHeJ_T0000852.1 MGP_C3HHeJ_G0000792.1 mouse_genomes_project 13 62804111 62805062 - TEC TEC MGP_C3HHeJ_T0036448.1 MGP_C3HHeJ_G0020203.1 mouse_genomes_project 13 32753939 32763970 - MGP_C3HHeJ_P0036448 Fam217a protein_coding protein_coding MGP_C3HHeJ_T0037019.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58437841 58438533 - Agtpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0037020.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58437842 58548451 - MGP_C3HHeJ_P0037020 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037021.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58437844 58523427 - MGP_C3HHeJ_P0037021 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037022.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58438184 58548084 - MGP_C3HHeJ_P0037022 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037023.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58438184 58548448 - MGP_C3HHeJ_P0037023 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037024.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58442149 58535602 - MGP_C3HHeJ_P0037024 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037025.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58461997 58469482 - Agtpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0037026.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58468724 58548457 - MGP_C3HHeJ_P0037026 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037027.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58483528 58548448 - MGP_C3HHeJ_P0037027 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037028.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58483538 58548456 - MGP_C3HHeJ_P0037028 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037029.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58501546 58504307 - Agtpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0037030.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58502572 58548473 - MGP_C3HHeJ_P0037030 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037031.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58504318 58524309 - Agtpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0037032.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58507834 58548451 - MGP_C3HHeJ_P0037032 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037033.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58518707 58548441 - MGP_C3HHeJ_P0037033 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037034.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58521418 58548509 - MGP_C3HHeJ_P0037034 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037035.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58522141 58548462 - MGP_C3HHeJ_P0037035 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037036.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58522141 58550932 - MGP_C3HHeJ_P0037036 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037037.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58522149 58548081 - MGP_C3HHeJ_P0037037 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037038.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58522279 58578132 - MGP_C3HHeJ_P0037038 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037039.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58526487 58548199 - MGP_C3HHeJ_P0037039 Agtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0037040.1 MGP_C3HHeJ_G0020386.1 mouse_genomes_project 13 58573096 58578148 - Agtpbp1 protein_coding processed_transcript MGP_C3HHeJ_T0009827.1 MGP_C3HHeJ_G0007960.1 mouse_genomes_project 13 14921502 14921633 + Mir466i miRNA miRNA MGP_C3HHeJ_T0037950.1 MGP_C3HHeJ_G0020708.1 mouse_genomes_project 13 120655452 120749334 - MGP_C3HHeJ_P0037950 Nnt protein_coding protein_coding MGP_C3HHeJ_T0037951.1 MGP_C3HHeJ_G0020708.1 mouse_genomes_project 13 120655452 120749334 - MGP_C3HHeJ_P0037951 Nnt protein_coding protein_coding MGP_C3HHeJ_T0037952.1 MGP_C3HHeJ_G0020708.1 mouse_genomes_project 13 120655526 120749279 - MGP_C3HHeJ_P0037952 Nnt protein_coding unknown_likely_coding MGP_C3HHeJ_T0037953.1 MGP_C3HHeJ_G0020708.1 mouse_genomes_project 13 120673485 120749334 - MGP_C3HHeJ_P0037953 Nnt protein_coding protein_coding MGP_C3HHeJ_T0037954.1 MGP_C3HHeJ_G0020708.1 mouse_genomes_project 13 120727575 120749334 - Nnt protein_coding processed_transcript MGP_C3HHeJ_T0037955.1 MGP_C3HHeJ_G0020708.1 mouse_genomes_project 13 120733738 120749334 - Nnt protein_coding processed_transcript MGP_C3HHeJ_T0012741.1 MGP_C3HHeJ_G0010845.1 mouse_genomes_project 13 8834574 8835560 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037936.1 MGP_C3HHeJ_G0020700.1 mouse_genomes_project 13 117573779 117585102 - MGP_C3HHeJ_P0037936 Isl1 protein_coding protein_coding MGP_C3HHeJ_T0037937.1 MGP_C3HHeJ_G0020700.1 mouse_genomes_project 13 117574762 117584835 - MGP_C3HHeJ_P0037937 Isl1 protein_coding protein_coding MGP_C3HHeJ_T0037938.1 MGP_C3HHeJ_G0020700.1 mouse_genomes_project 13 117574894 117578830 - Isl1 protein_coding retained_intron MGP_C3HHeJ_T0037939.1 MGP_C3HHeJ_G0020700.1 mouse_genomes_project 13 117578524 117581827 - Isl1 protein_coding processed_transcript MGP_C3HHeJ_T0037940.1 MGP_C3HHeJ_G0020700.1 mouse_genomes_project 13 117582322 117585098 - Isl1 protein_coding retained_intron MGP_C3HHeJ_T0037196.1 MGP_C3HHeJ_G0020455.1 mouse_genomes_project 13 66807253 66853497 - MGP_C3HHeJ_P0037196 Gm28041 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000869.1 MGP_C3HHeJ_G0000809.1 mouse_genomes_project 13 102493464 102493864 - TEC TEC MGP_C3HHeJ_T0036986.1 MGP_C3HHeJ_G0020376.1 mouse_genomes_project 13 57066849 57069549 - MGP_C3HHeJ_P0036986 Hnrnpa0 protein_coding protein_coding MGP_C3HHeJ_T0101710.1 MGP_C3HHeJ_G0039675.1 mouse_genomes_project 13 20465863 20466768 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0037635.1 MGP_C3HHeJ_G0020602.1 mouse_genomes_project 13 97660501 97683412 - MGP_C3HHeJ_P0037635 Hexb protein_coding protein_coding MGP_C3HHeJ_T0037133.1 MGP_C3HHeJ_G0020421.1 mouse_genomes_project 13 63395625 63415951 - MGP_C3HHeJ_P0037133 Zfp367 protein_coding protein_coding MGP_C3HHeJ_T0037134.1 MGP_C3HHeJ_G0020421.1 mouse_genomes_project 13 63398012 63415178 - Zfp367 protein_coding processed_transcript MGP_C3HHeJ_T0037135.1 MGP_C3HHeJ_G0020421.1 mouse_genomes_project 13 63398139 63412963 - Zfp367 protein_coding processed_transcript MGP_C3HHeJ_T0037136.1 MGP_C3HHeJ_G0020421.1 mouse_genomes_project 13 63403083 63415951 - MGP_C3HHeJ_P0037136 Zfp367 protein_coding protein_coding MGP_C3HHeJ_T0037802.1 MGP_C3HHeJ_G0020655.1 mouse_genomes_project 13 106298858 106303299 + MGP_C3HHeJ_P0037802 Htr1a protein_coding protein_coding MGP_C3HHeJ_T0036767.1 MGP_C3HHeJ_G0020316.1 mouse_genomes_project 13 53136471 53150601 + MGP_C3HHeJ_P0036767 Cplx2 protein_coding protein_coding MGP_C3HHeJ_T0035891.1 MGP_C3HHeJ_G0019940.1 mouse_genomes_project 13 483903 515394 + MGP_C3HHeJ_P0035891 Calm5 protein_coding protein_coding MGP_C3HHeJ_T0098911.1 MGP_C3HHeJ_G0037105.1 mouse_genomes_project 13 116322573 116322680 + Gm25985 snRNA snRNA MGP_C3HHeJ_T0037653.1 MGP_C3HHeJ_G0020609.1 mouse_genomes_project 13 98920925 98923387 + MGP_C3HHeJ_P0037653 Foxd1 protein_coding protein_coding MGP_C3HHeJ_T0037568.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95385395 95623965 - MGP_C3HHeJ_P0037568 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037569.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95385400 95395196 - MGP_C3HHeJ_P0037569 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037570.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95385446 95596638 - MGP_C3HHeJ_P0037570 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037571.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95386271 95406933 - Pde8b protein_coding processed_transcript MGP_C3HHeJ_T0037572.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95387044 95623795 - MGP_C3HHeJ_P0037572 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037573.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95387061 95596385 - MGP_C3HHeJ_P0037573 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037574.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95387061 95596385 - MGP_C3HHeJ_P0037574 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037575.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95387061 95596385 - MGP_C3HHeJ_P0037575 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037576.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95394888 95597127 - MGP_C3HHeJ_P0037576 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037577.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95403944 95623903 - MGP_C3HHeJ_P0037577 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037578.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95404390 95413834 - Pde8b protein_coding retained_intron MGP_C3HHeJ_T0037579.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95452053 95596638 - Pde8b protein_coding retained_intron MGP_C3HHeJ_T0037580.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95462903 95623944 - MGP_C3HHeJ_P0037580 Pde8b protein_coding protein_coding MGP_C3HHeJ_T0037581.1 MGP_C3HHeJ_G0020581.1 mouse_genomes_project 13 95468313 95557235 - Pde8b protein_coding processed_transcript MGP_C3HHeJ_T0037231.1 MGP_C3HHeJ_G0020474.1 mouse_genomes_project 13 67464732 67465330 + MGP_C3HHeJ_P0037231 BC048507 protein_coding protein_coding MGP_C3HHeJ_T0006483.1 MGP_C3HHeJ_G0005373.1 mouse_genomes_project 13 46285095 46346549 - 4931429P17Rik lincRNA lincRNA MGP_C3HHeJ_T0036238.1 MGP_C3HHeJ_G0020113.1 mouse_genomes_project 13 21120958 21121447 - MGP_C3HHeJ_P0036238 Hist1h3c protein_coding protein_coding MGP_C3HHeJ_T0012811.1 MGP_C3HHeJ_G0010915.1 mouse_genomes_project 13 74114317 74114656 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036648.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47418643 47531441 - MGP_C3HHeJ_P0036648 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036649.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47418643 47531441 - MGP_C3HHeJ_P0036649 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036650.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47418643 47531441 - MGP_C3HHeJ_P0036650 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036651.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47418643 47531439 - MGP_C3HHeJ_P0036651 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036652.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47418649 47530659 - MGP_C3HHeJ_P0036652 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036653.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47418650 47530659 - MGP_C3HHeJ_P0036653 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036654.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47419949 47442747 - MGP_C3HHeJ_P0036654 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036655.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47419960 47459893 - MGP_C3HHeJ_P0036655 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036656.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47420321 47531441 - MGP_C3HHeJ_P0036656 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036657.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47421214 47531441 - MGP_C3HHeJ_P0036657 Wnk2 protein_coding protein_coding MGP_C3HHeJ_T0036658.1 MGP_C3HHeJ_G0020278.1 mouse_genomes_project 13 47443192 47452871 - MGP_C3HHeJ_P0036658 Wnk2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036538.1 MGP_C3HHeJ_G0020238.1 mouse_genomes_project 13 39393146 39442250 - MGP_C3HHeJ_P0036538 Nedd9 protein_coding protein_coding MGP_C3HHeJ_T0036539.1 MGP_C3HHeJ_G0020238.1 mouse_genomes_project 13 39393146 39575715 - MGP_C3HHeJ_P0036539 Nedd9 protein_coding protein_coding MGP_C3HHeJ_T0037914.1 MGP_C3HHeJ_G0020689.1 mouse_genomes_project 13 114341179 114349593 + MGP_C3HHeJ_P0037914 Esm1 protein_coding protein_coding MGP_C3HHeJ_T0036315.1 MGP_C3HHeJ_G0020140.1 mouse_genomes_project 13 24202343 24204287 - MGP_C3HHeJ_P0036315 Hdgfl1 protein_coding protein_coding MGP_C3HHeJ_T0098363.1 MGP_C3HHeJ_G0036571.1 mouse_genomes_project 13 62617064 62620665 - Gm16132 sense_intronic sense_intronic MGP_C3HHeJ_T0037232.1 MGP_C3HHeJ_G0020475.1 mouse_genomes_project 13 68210797 68232400 - MGP_C3HHeJ_P0037232 Mtrr protein_coding protein_coding MGP_C3HHeJ_T0036136.1 MGP_C3HHeJ_G0020033.1 mouse_genomes_project 13 18922564 18923518 - MGP_C3HHeJ_P0036136 Olfr1361 protein_coding protein_coding MGP_C3HHeJ_T0006518.1 MGP_C3HHeJ_G0005396.1 mouse_genomes_project 13 79188944 79202117 + Gm29318 lincRNA lincRNA MGP_C3HHeJ_T0098901.1 MGP_C3HHeJ_G0037095.1 mouse_genomes_project 13 63562087 63562175 - Gm25654 snRNA snRNA MGP_C3HHeJ_T0036323.1 MGP_C3HHeJ_G0020146.1 mouse_genomes_project 13 24749131 24768331 + MGP_C3HHeJ_P0036323 Prl3a1 protein_coding protein_coding MGP_C3HHeJ_T0012822.1 MGP_C3HHeJ_G0010926.1 mouse_genomes_project 13 89881565 89882166 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036307.1 MGP_C3HHeJ_G0020138.1 mouse_genomes_project 13 22448718 22512629 + MGP_C3HHeJ_P0036307 Dcdc2a protein_coding protein_coding MGP_C3HHeJ_T0036308.1 MGP_C3HHeJ_G0020138.1 mouse_genomes_project 13 22448967 22606324 + MGP_C3HHeJ_P0036308 Dcdc2a protein_coding protein_coding MGP_C3HHeJ_T0036309.1 MGP_C3HHeJ_G0020138.1 mouse_genomes_project 13 22487475 22510512 + Dcdc2a protein_coding processed_transcript MGP_C3HHeJ_T0036310.1 MGP_C3HHeJ_G0020138.1 mouse_genomes_project 13 22579584 22597687 + Dcdc2a protein_coding processed_transcript MGP_C3HHeJ_T0012797.1 MGP_C3HHeJ_G0010901.1 mouse_genomes_project 13 62680713 62681049 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037608.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97086407 97108466 - MGP_C3HHeJ_P0037608 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037609.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97087718 97104205 - MGP_C3HHeJ_P0037609 Hmgcr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037610.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97087885 97090229 - MGP_C3HHeJ_P0037610 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037611.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97088791 97104152 - MGP_C3HHeJ_P0037611 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037612.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97089558 97094095 - MGP_C3HHeJ_P0037612 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037613.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97096335 97108405 - Hmgcr protein_coding retained_intron MGP_C3HHeJ_T0037614.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97097601 97108353 - MGP_C3HHeJ_P0037614 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037615.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97103147 97104029 - Hmgcr protein_coding retained_intron MGP_C3HHeJ_T0037616.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97103557 97107090 - MGP_C3HHeJ_P0037616 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037617.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97103562 97107998 - MGP_C3HHeJ_P0037617 Hmgcr protein_coding protein_coding MGP_C3HHeJ_T0037618.1 MGP_C3HHeJ_G0020597.1 mouse_genomes_project 13 97103760 97108378 - Hmgcr protein_coding retained_intron MGP_C3HHeJ_T0036665.1 MGP_C3HHeJ_G0020281.1 mouse_genomes_project 13 47617725 47636485 - MGP_C3HHeJ_P0036665 Susd3 protein_coding protein_coding MGP_C3HHeJ_T0036666.1 MGP_C3HHeJ_G0020281.1 mouse_genomes_project 13 47617864 47636897 - MGP_C3HHeJ_P0036666 Susd3 protein_coding protein_coding MGP_C3HHeJ_T0036667.1 MGP_C3HHeJ_G0020281.1 mouse_genomes_project 13 47618338 47636854 - MGP_C3HHeJ_P0036667 Susd3 protein_coding protein_coding MGP_C3HHeJ_T0036668.1 MGP_C3HHeJ_G0020281.1 mouse_genomes_project 13 47625265 47628199 - Susd3 protein_coding processed_transcript MGP_C3HHeJ_T0036669.1 MGP_C3HHeJ_G0020281.1 mouse_genomes_project 13 47625567 47636345 - MGP_C3HHeJ_P0036669 Susd3 protein_coding protein_coding MGP_C3HHeJ_T0036670.1 MGP_C3HHeJ_G0020281.1 mouse_genomes_project 13 47626484 47630481 - Susd3 protein_coding processed_transcript MGP_C3HHeJ_T0100136.1 MGP_C3HHeJ_G0038330.1 mouse_genomes_project 13 16149510 16149644 + Gm26172 snoRNA snoRNA MGP_C3HHeJ_T0036134.1 MGP_C3HHeJ_G0020032.1 mouse_genomes_project 13 18901997 18905672 - MGP_C3HHeJ_P0036134 Olfr11 protein_coding protein_coding MGP_C3HHeJ_T0036135.1 MGP_C3HHeJ_G0020032.1 mouse_genomes_project 13 18901997 18902939 - MGP_C3HHeJ_P0036135 Olfr11 protein_coding protein_coding MGP_C3HHeJ_T0006428.1 MGP_C3HHeJ_G0005334.1 mouse_genomes_project 13 2610564 2613147 - 1700016G22Rik lincRNA lincRNA MGP_C3HHeJ_T0006429.1 MGP_C3HHeJ_G0005334.1 mouse_genomes_project 13 2610564 2612767 - 1700016G22Rik lincRNA lincRNA MGP_C3HHeJ_T0011269.1 MGP_C3HHeJ_G0009402.1 mouse_genomes_project 13 109449153 109449347 - Gm28016 misc_RNA misc_RNA MGP_C3HHeJ_T0037187.1 MGP_C3HHeJ_G0020448.1 mouse_genomes_project 13 66636992 66661333 + MGP_C3HHeJ_P0037187 protein_coding protein_coding MGP_C3HHeJ_T0036245.1 MGP_C3HHeJ_G0020120.1 mouse_genomes_project 13 21186134 21202548 + Slc17a2 protein_coding retained_intron MGP_C3HHeJ_T0036246.1 MGP_C3HHeJ_G0020120.1 mouse_genomes_project 13 21186168 21204323 + MGP_C3HHeJ_P0036246 Slc17a2 protein_coding protein_coding MGP_C3HHeJ_T0036247.1 MGP_C3HHeJ_G0020120.1 mouse_genomes_project 13 21186186 21202319 + Slc17a2 protein_coding retained_intron MGP_C3HHeJ_T0036248.1 MGP_C3HHeJ_G0020120.1 mouse_genomes_project 13 21186189 21201900 + MGP_C3HHeJ_P0036248 Slc17a2 protein_coding protein_coding MGP_C3HHeJ_T0036241.1 MGP_C3HHeJ_G0020116.1 mouse_genomes_project 13 21139374 21140608 - MGP_C3HHeJ_P0036241 Hist1h4a protein_coding protein_coding MGP_C3HHeJ_T0098906.1 MGP_C3HHeJ_G0037100.1 mouse_genomes_project 13 96512170 96512270 - Gm23955 snRNA snRNA MGP_C3HHeJ_T0036131.1 MGP_C3HHeJ_G0020030.1 mouse_genomes_project 13 18842043 18851059 - MGP_C3HHeJ_P0036131 Olfr1364 protein_coding protein_coding MGP_C3HHeJ_T0036132.1 MGP_C3HHeJ_G0020030.1 mouse_genomes_project 13 18842043 18842988 - MGP_C3HHeJ_P0036132 Olfr1364 protein_coding protein_coding MGP_C3HHeJ_T0009869.1 MGP_C3HHeJ_G0008002.1 mouse_genomes_project 13 87586687 87586797 + Gm24935 miRNA miRNA MGP_C3HHeJ_T0036404.1 MGP_C3HHeJ_G0020188.1 mouse_genomes_project 13 30998044 31008809 + MGP_C3HHeJ_P0036404 Serpinb9d protein_coding protein_coding MGP_C3HHeJ_T0036879.1 MGP_C3HHeJ_G0020335.1 mouse_genomes_project 13 53940867 53941454 - MGP_C3HHeJ_P0036879 Gm17617 protein_coding protein_coding MGP_C3HHeJ_T0036046.1 MGP_C3HHeJ_G0019994.1 mouse_genomes_project 13 11813541 11821550 + MGP_C3HHeJ_P0036046 AW209491 protein_coding protein_coding MGP_C3HHeJ_T0036047.1 MGP_C3HHeJ_G0019994.1 mouse_genomes_project 13 11813554 11821550 + MGP_C3HHeJ_P0036047 AW209491 protein_coding protein_coding MGP_C3HHeJ_T0036970.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658282 55783356 - MGP_C3HHeJ_P0036970 Trpc7 protein_coding protein_coding MGP_C3HHeJ_T0036971.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658282 55783317 - MGP_C3HHeJ_P0036971 Trpc7 protein_coding protein_coding MGP_C3HHeJ_T0036972.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658437 55783369 - MGP_C3HHeJ_P0036972 Trpc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036973.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658935 55783074 - MGP_C3HHeJ_P0036973 Trpc7 protein_coding protein_coding MGP_C3HHeJ_T0036974.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658935 55783074 - MGP_C3HHeJ_P0036974 Trpc7 protein_coding protein_coding MGP_C3HHeJ_T0036975.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658935 55783074 - MGP_C3HHeJ_P0036975 Trpc7 protein_coding protein_coding MGP_C3HHeJ_T0036976.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658935 55783074 - MGP_C3HHeJ_P0036976 Trpc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036977.1 MGP_C3HHeJ_G0020373.1 mouse_genomes_project 13 55658935 55783074 - MGP_C3HHeJ_P0036977 Trpc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037638.1 MGP_C3HHeJ_G0020605.1 mouse_genomes_project 13 98813975 98830122 - MGP_C3HHeJ_P0037638 Utp15 protein_coding protein_coding MGP_C3HHeJ_T0036607.1 MGP_C3HHeJ_G0020264.1 mouse_genomes_project 13 44953836 45002189 - MGP_C3HHeJ_P0036607 Nup153 protein_coding protein_coding MGP_C3HHeJ_T0036608.1 MGP_C3HHeJ_G0020264.1 mouse_genomes_project 13 44955006 44955884 - Nup153 protein_coding retained_intron MGP_C3HHeJ_T0036609.1 MGP_C3HHeJ_G0020264.1 mouse_genomes_project 13 44956776 44957946 - Nup153 protein_coding retained_intron MGP_C3HHeJ_T0036610.1 MGP_C3HHeJ_G0020264.1 mouse_genomes_project 13 44973548 44976020 - Nup153 protein_coding retained_intron MGP_C3HHeJ_T0036611.1 MGP_C3HHeJ_G0020264.1 mouse_genomes_project 13 44983831 44991518 - Nup153 protein_coding processed_transcript MGP_C3HHeJ_T0006520.1 MGP_C3HHeJ_G0005398.1 mouse_genomes_project 13 80895895 80903381 - Gm4211 lincRNA lincRNA MGP_C3HHeJ_T0037800.1 MGP_C3HHeJ_G0020654.1 mouse_genomes_project 13 105971191 106119986 - MGP_C3HHeJ_P0037800 Rnf180 protein_coding unknown_likely_coding MGP_C3HHeJ_T0037801.1 MGP_C3HHeJ_G0020654.1 mouse_genomes_project 13 105991005 106119986 - MGP_C3HHeJ_P0037801 Rnf180 protein_coding protein_coding MGP_C3HHeJ_T0037516.1 MGP_C3HHeJ_G0020561.1 mouse_genomes_project 13 92768910 92819629 - MGP_C3HHeJ_P0037516 Zfyve16 protein_coding protein_coding MGP_C3HHeJ_T0037517.1 MGP_C3HHeJ_G0020561.1 mouse_genomes_project 13 92769649 92805218 - Zfyve16 protein_coding retained_intron MGP_C3HHeJ_T0037518.1 MGP_C3HHeJ_G0020561.1 mouse_genomes_project 13 92795327 92797718 - Zfyve16 protein_coding retained_intron MGP_C3HHeJ_T0037519.1 MGP_C3HHeJ_G0020561.1 mouse_genomes_project 13 92801913 92809773 - Zfyve16 protein_coding processed_transcript MGP_C3HHeJ_T0006509.1 MGP_C3HHeJ_G0005389.1 mouse_genomes_project 13 62522122 62529756 - Gm16907 lincRNA lincRNA MGP_C3HHeJ_T0037175.1 MGP_C3HHeJ_G0020441.1 mouse_genomes_project 13 66356647 66423952 + MGP_C3HHeJ_P0037175 Ptdss1 protein_coding protein_coding MGP_C3HHeJ_T0037084.1 MGP_C3HHeJ_G0020407.1 mouse_genomes_project 13 60248058 60256335 - MGP_C3HHeJ_P0037084 Cts6 protein_coding protein_coding MGP_C3HHeJ_T0100135.1 MGP_C3HHeJ_G0038329.1 mouse_genomes_project 13 10464541 10464729 + Gm25804 snoRNA snoRNA MGP_C3HHeJ_T0037266.1 MGP_C3HHeJ_G0020491.1 mouse_genomes_project 13 73067296 73068463 + MGP_C3HHeJ_P0037266 Mrpl36 protein_coding protein_coding MGP_C3HHeJ_T0012755.1 MGP_C3HHeJ_G0010859.1 mouse_genomes_project 13 19752614 19756167 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037327.1 MGP_C3HHeJ_G0020514.1 mouse_genomes_project 13 74476298 74529849 + MGP_C3HHeJ_P0037327 Erap1 protein_coding protein_coding MGP_C3HHeJ_T0037672.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100640128 100728065 - MGP_C3HHeJ_P0037672 Bdp1 protein_coding protein_coding MGP_C3HHeJ_T0037673.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100640130 100679471 - MGP_C3HHeJ_P0037673 Bdp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037674.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100645436 100727833 - MGP_C3HHeJ_P0037674 Bdp1 protein_coding protein_coding MGP_C3HHeJ_T0037675.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100666001 100670088 - Bdp1 protein_coding retained_intron MGP_C3HHeJ_T0037676.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100685414 100690462 - Bdp1 protein_coding retained_intron MGP_C3HHeJ_T0037677.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100702720 100722571 - MGP_C3HHeJ_P0037677 Bdp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037678.1 MGP_C3HHeJ_G0020622.1 mouse_genomes_project 13 100721532 100727872 - MGP_C3HHeJ_P0037678 Bdp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100153.1 MGP_C3HHeJ_G0038347.1 mouse_genomes_project 13 57278171 57278313 + Gm24284 snoRNA snoRNA MGP_C3HHeJ_T0003362.1 MGP_C3HHeJ_G0003088.1 mouse_genomes_project 13 19031507 19032851 + Gm11274 antisense antisense MGP_C3HHeJ_T0037280.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73431308 73452888 - MGP_C3HHeJ_P0037280 Slc6a19 protein_coding protein_coding MGP_C3HHeJ_T0037281.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73431310 73452803 - Slc6a19 protein_coding retained_intron MGP_C3HHeJ_T0037282.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73431310 73444197 - Slc6a19 protein_coding processed_transcript MGP_C3HHeJ_T0037283.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73440650 73456973 - Slc6a19 protein_coding processed_transcript MGP_C3HHeJ_T0037284.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73441133 73443940 - Slc6a19 protein_coding processed_transcript MGP_C3HHeJ_T0037285.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73441301 73452789 - MGP_C3HHeJ_P0037285 Slc6a19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037286.1 MGP_C3HHeJ_G0020497.1 mouse_genomes_project 13 73441339 73443818 - Slc6a19 protein_coding processed_transcript MGP_C3HHeJ_T0006471.1 MGP_C3HHeJ_G0005364.1 mouse_genomes_project 13 35413206 35417051 + Gm29590 lincRNA lincRNA MGP_C3HHeJ_T0003402.1 MGP_C3HHeJ_G0003116.1 mouse_genomes_project 13 69199768 69200730 - A530095I07Rik antisense antisense MGP_C3HHeJ_T0006459.1 MGP_C3HHeJ_G0005357.1 mouse_genomes_project 13 29333581 29350727 - 1700018A04Rik lincRNA lincRNA MGP_C3HHeJ_T0006460.1 MGP_C3HHeJ_G0005357.1 mouse_genomes_project 13 29335487 29350735 - 1700018A04Rik lincRNA lincRNA MGP_C3HHeJ_T0006461.1 MGP_C3HHeJ_G0005357.1 mouse_genomes_project 13 29346508 29350735 - 1700018A04Rik lincRNA lincRNA MGP_C3HHeJ_T0035943.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5595500 5665139 - MGP_C3HHeJ_P0035943 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035944.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5595527 5664453 - MGP_C3HHeJ_P0035944 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035945.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5599365 5636266 - MGP_C3HHeJ_P0035945 Wdr37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035946.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5607407 5638187 - MGP_C3HHeJ_P0035946 Wdr37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035947.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5607465 5642361 - MGP_C3HHeJ_P0035947 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035948.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5622933 5624779 - Wdr37 protein_coding retained_intron MGP_C3HHeJ_T0035949.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5630308 5647418 - MGP_C3HHeJ_P0035949 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035950.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5636308 5665145 - MGP_C3HHeJ_P0035950 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035951.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5638171 5649881 - MGP_C3HHeJ_P0035951 Wdr37 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0035952.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5639108 5664432 - MGP_C3HHeJ_P0035952 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035953.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5641322 5664388 - MGP_C3HHeJ_P0035953 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035954.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5641325 5649878 - MGP_C3HHeJ_P0035954 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035955.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5641978 5664403 - Wdr37 protein_coding processed_transcript MGP_C3HHeJ_T0035956.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5642326 5647431 - Wdr37 protein_coding processed_transcript MGP_C3HHeJ_T0035957.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5645571 5665318 - MGP_C3HHeJ_P0035957 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0035958.1 MGP_C3HHeJ_G0019961.1 mouse_genomes_project 13 5649791 5664416 - MGP_C3HHeJ_P0035958 Wdr37 protein_coding protein_coding MGP_C3HHeJ_T0036066.1 MGP_C3HHeJ_G0020003.1 mouse_genomes_project 13 16170992 16360937 + MGP_C3HHeJ_P0036066 Amph protein_coding protein_coding MGP_C3HHeJ_T0036067.1 MGP_C3HHeJ_G0020003.1 mouse_genomes_project 13 16171012 16360940 + MGP_C3HHeJ_P0036067 Amph protein_coding protein_coding MGP_C3HHeJ_T0036068.1 MGP_C3HHeJ_G0020003.1 mouse_genomes_project 13 16171039 16312340 + Amph protein_coding retained_intron MGP_C3HHeJ_T0036069.1 MGP_C3HHeJ_G0020003.1 mouse_genomes_project 13 16328593 16330500 + Amph protein_coding retained_intron MGP_C3HHeJ_T0036070.1 MGP_C3HHeJ_G0020003.1 mouse_genomes_project 13 16330264 16352053 + Amph protein_coding processed_transcript MGP_C3HHeJ_T0037671.1 MGP_C3HHeJ_G0020621.1 mouse_genomes_project 13 100560750 100637774 - MGP_C3HHeJ_P0037671 Mccc2 protein_coding protein_coding MGP_C3HHeJ_T0036139.1 MGP_C3HHeJ_G0020036.1 mouse_genomes_project 13 18979333 18979628 - MGP_C3HHeJ_P0036139 protein_coding protein_coding MGP_C3HHeJ_T0012752.1 MGP_C3HHeJ_G0010856.1 mouse_genomes_project 13 19253223 19254639 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003367.1 MGP_C3HHeJ_G0003092.1 mouse_genomes_project 13 19891610 19892420 + Gm11314 antisense antisense MGP_C3HHeJ_T0037218.1 MGP_C3HHeJ_G0020467.1 mouse_genomes_project 13 67244277 67261639 - MGP_C3HHeJ_P0037218 Zfp65 protein_coding protein_coding MGP_C3HHeJ_T0037219.1 MGP_C3HHeJ_G0020467.1 mouse_genomes_project 13 67248879 67261673 - MGP_C3HHeJ_P0037219 Zfp65 protein_coding protein_coding MGP_C3HHeJ_T0036526.1 MGP_C3HHeJ_G0020231.1 mouse_genomes_project 13 39096499 39105943 + MGP_C3HHeJ_P0036526 Tmem14c protein_coding protein_coding MGP_C3HHeJ_T0036375.1 MGP_C3HHeJ_G0020171.1 mouse_genomes_project 13 28713008 28714195 - MGP_C3HHeJ_P0036375 Hus1b protein_coding protein_coding MGP_C3HHeJ_T0036633.1 MGP_C3HHeJ_G0020270.1 mouse_genomes_project 13 45408043 45538281 + MGP_C3HHeJ_P0036633 Rnf144b protein_coding protein_coding MGP_C3HHeJ_T0036634.1 MGP_C3HHeJ_G0020270.1 mouse_genomes_project 13 45481949 45538281 + MGP_C3HHeJ_P0036634 Rnf144b protein_coding protein_coding MGP_C3HHeJ_T0036592.1 MGP_C3HHeJ_G0020255.1 mouse_genomes_project 13 43273234 43275469 + MGP_C3HHeJ_P0036592 protein_coding protein_coding MGP_C3HHeJ_T0098879.1 MGP_C3HHeJ_G0037073.1 mouse_genomes_project 13 14362330 14362437 + Gm25020 snRNA snRNA MGP_C3HHeJ_T0036794.1 MGP_C3HHeJ_G0020323.1 mouse_genomes_project 13 53371496 53390320 - MGP_C3HHeJ_P0036794 Cltb protein_coding protein_coding MGP_C3HHeJ_T0036795.1 MGP_C3HHeJ_G0020323.1 mouse_genomes_project 13 53372633 53378257 - MGP_C3HHeJ_P0036795 Cltb protein_coding protein_coding MGP_C3HHeJ_T0036796.1 MGP_C3HHeJ_G0020323.1 mouse_genomes_project 13 53372680 53390268 - MGP_C3HHeJ_P0036796 Cltb protein_coding protein_coding MGP_C3HHeJ_T0036797.1 MGP_C3HHeJ_G0020323.1 mouse_genomes_project 13 53375135 53390268 - Cltb protein_coding retained_intron MGP_C3HHeJ_T0098898.1 MGP_C3HHeJ_G0037092.1 mouse_genomes_project 13 55211949 55212053 - Gm24716 snRNA snRNA MGP_C3HHeJ_T0100144.1 MGP_C3HHeJ_G0038338.1 mouse_genomes_project 13 43030163 43030282 - Gm22213 snoRNA snoRNA MGP_C3HHeJ_T0035921.1 MGP_C3HHeJ_G0019955.1 mouse_genomes_project 13 2616254 2625704 + MGP_C3HHeJ_P0035921 Klf6 protein_coding protein_coding MGP_C3HHeJ_T0037239.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69188522 69280382 + MGP_C3HHeJ_P0037239 Nsun2 protein_coding protein_coding MGP_C3HHeJ_T0037240.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69188544 69270860 + Nsun2 protein_coding processed_transcript MGP_C3HHeJ_T0037243.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69276960 69300034 + MGP_C3HHeJ_P0037243 Nsun2 protein_coding protein_coding MGP_C3HHeJ_T0037244.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69277004 69300326 + MGP_C3HHeJ_P0037244 Nsun2 protein_coding protein_coding MGP_C3HHeJ_T0037245.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69277514 69284508 + Nsun2 protein_coding processed_transcript MGP_C3HHeJ_T0037246.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69286236 69294564 + Nsun2 protein_coding retained_intron MGP_C3HHeJ_T0037247.1 MGP_C3HHeJ_G0020480.1 mouse_genomes_project 13 69295674 69296603 + Nsun2 protein_coding retained_intron MGP_C3HHeJ_T0035913.1 MGP_C3HHeJ_G0019951.1 mouse_genomes_project 13 1171026 1214282 - MGP_C3HHeJ_P0035913 Akr1c20 protein_coding protein_coding MGP_C3HHeJ_T0035914.1 MGP_C3HHeJ_G0019951.1 mouse_genomes_project 13 1198176 1214297 - MGP_C3HHeJ_P0035914 Akr1c20 protein_coding protein_coding MGP_C3HHeJ_T0036674.1 MGP_C3HHeJ_G0020283.1 mouse_genomes_project 13 47733666 47778733 + MGP_C3HHeJ_P0036674 Bicd2 protein_coding protein_coding MGP_C3HHeJ_T0036675.1 MGP_C3HHeJ_G0020283.1 mouse_genomes_project 13 47733666 47778733 + MGP_C3HHeJ_P0036675 Bicd2 protein_coding protein_coding MGP_C3HHeJ_T0036676.1 MGP_C3HHeJ_G0020283.1 mouse_genomes_project 13 47733666 47778733 + MGP_C3HHeJ_P0036676 Bicd2 protein_coding protein_coding MGP_C3HHeJ_T0037158.1 MGP_C3HHeJ_G0020437.1 mouse_genomes_project 13 64582637 64608058 + MGP_C3HHeJ_P0037158 Zfp369 protein_coding protein_coding MGP_C3HHeJ_T0037159.1 MGP_C3HHeJ_G0020437.1 mouse_genomes_project 13 64582637 64603750 + MGP_C3HHeJ_P0037159 Zfp369 protein_coding protein_coding MGP_C3HHeJ_T0037160.1 MGP_C3HHeJ_G0020437.1 mouse_genomes_project 13 64582675 64593456 + Zfp369 protein_coding retained_intron MGP_C3HHeJ_T0037161.1 MGP_C3HHeJ_G0020437.1 mouse_genomes_project 13 64582726 64590940 + MGP_C3HHeJ_P0037161 Zfp369 protein_coding protein_coding MGP_C3HHeJ_T0100148.1 MGP_C3HHeJ_G0038342.1 mouse_genomes_project 13 48092358 48092491 + Gm25394 snoRNA snoRNA MGP_C3HHeJ_T0037352.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 76945205 77032863 - MGP_C3HHeJ_P0037352 Slf1 protein_coding protein_coding MGP_C3HHeJ_T0037353.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 76946090 76949513 - Slf1 protein_coding retained_intron MGP_C3HHeJ_T0037354.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 76997858 77032855 - MGP_C3HHeJ_P0037354 Slf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037355.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 77001378 77032855 - MGP_C3HHeJ_P0037355 Slf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037356.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 77002316 77028686 - MGP_C3HHeJ_P0037356 Slf1 protein_coding protein_coding MGP_C3HHeJ_T0037357.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 77002402 77032828 - MGP_C3HHeJ_P0037357 Slf1 protein_coding protein_coding MGP_C3HHeJ_T0037358.1 MGP_C3HHeJ_G0020526.1 mouse_genomes_project 13 77003343 77032850 - Slf1 protein_coding retained_intron MGP_C3HHeJ_T0036181.1 MGP_C3HHeJ_G0020066.1 mouse_genomes_project 13 19507212 19508172 - MGP_C3HHeJ_P0036181 Vmn1r193 protein_coding protein_coding MGP_C3HHeJ_T0101354.1 MGP_C3HHeJ_G0039424.1 mouse_genomes_project 13 20990202 20990522 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0036344.1 MGP_C3HHeJ_G0020158.1 mouse_genomes_project 13 25319668 25324893 - MGP_C3HHeJ_P0036344 Prl7c1 protein_coding protein_coding MGP_C3HHeJ_T0036159.1 MGP_C3HHeJ_G0020055.1 mouse_genomes_project 13 19050140 19116452 + MGP_C3HHeJ_P0036159 Hist1h2br protein_coding protein_coding MGP_C3HHeJ_T0036160.1 MGP_C3HHeJ_G0020055.1 mouse_genomes_project 13 19050152 19117317 + MGP_C3HHeJ_P0036160 Hist1h2br protein_coding protein_coding MGP_C3HHeJ_T0012781.1 MGP_C3HHeJ_G0010885.1 mouse_genomes_project 13 28150232 28150550 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036978.1 MGP_C3HHeJ_G0020374.1 mouse_genomes_project 13 56335609 56833269 - MGP_C3HHeJ_P0036978 Spock1 protein_coding protein_coding MGP_C3HHeJ_T0036979.1 MGP_C3HHeJ_G0020374.1 mouse_genomes_project 13 56335621 56833230 - MGP_C3HHeJ_P0036979 Spock1 protein_coding protein_coding MGP_C3HHeJ_T0036980.1 MGP_C3HHeJ_G0020374.1 mouse_genomes_project 13 56340508 56833230 - MGP_C3HHeJ_P0036980 Spock1 protein_coding protein_coding MGP_C3HHeJ_T0036981.1 MGP_C3HHeJ_G0020374.1 mouse_genomes_project 13 56343149 56833246 - MGP_C3HHeJ_P0036981 Spock1 protein_coding protein_coding MGP_C3HHeJ_T0036982.1 MGP_C3HHeJ_G0020374.1 mouse_genomes_project 13 56343734 56832542 - MGP_C3HHeJ_P0036982 Spock1 protein_coding protein_coding MGP_C3HHeJ_T0036983.1 MGP_C3HHeJ_G0020374.1 mouse_genomes_project 13 56348854 56833254 - Spock1 protein_coding retained_intron MGP_C3HHeJ_T0036680.1 MGP_C3HHeJ_G0020287.1 mouse_genomes_project 13 47943764 47970548 + MGP_C3HHeJ_P0036680 Aspn protein_coding protein_coding MGP_C3HHeJ_T0036681.1 MGP_C3HHeJ_G0020287.1 mouse_genomes_project 13 47943764 47970548 + MGP_C3HHeJ_P0036681 Aspn protein_coding protein_coding MGP_C3HHeJ_T0101724.1 MGP_C3HHeJ_G0039689.1 mouse_genomes_project 13 31556704 31560484 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100131.1 MGP_C3HHeJ_G0038325.1 mouse_genomes_project 13 5760999 5761134 - Gm25274 snoRNA snoRNA MGP_C3HHeJ_T0037491.1 MGP_C3HHeJ_G0020555.1 mouse_genomes_project 13 92148019 92384431 - MGP_C3HHeJ_P0037491 Rasgrf2 protein_coding protein_coding MGP_C3HHeJ_T0037492.1 MGP_C3HHeJ_G0020555.1 mouse_genomes_project 13 92152049 92384431 - MGP_C3HHeJ_P0037492 Rasgrf2 protein_coding protein_coding MGP_C3HHeJ_T0037493.1 MGP_C3HHeJ_G0020555.1 mouse_genomes_project 13 92225241 92250405 - MGP_C3HHeJ_P0037493 Rasgrf2 protein_coding protein_coding MGP_C3HHeJ_T0037494.1 MGP_C3HHeJ_G0020555.1 mouse_genomes_project 13 92277547 92384593 - MGP_C3HHeJ_P0037494 Rasgrf2 protein_coding protein_coding MGP_C3HHeJ_T0037495.1 MGP_C3HHeJ_G0020555.1 mouse_genomes_project 13 92277547 92279956 - MGP_C3HHeJ_P0037495 Rasgrf2 protein_coding protein_coding MGP_C3HHeJ_T0036984.1 MGP_C3HHeJ_G0020375.1 mouse_genomes_project 13 56936693 57052959 - MGP_C3HHeJ_P0036984 Klhl3 protein_coding protein_coding MGP_C3HHeJ_T0036985.1 MGP_C3HHeJ_G0020375.1 mouse_genomes_project 13 56937431 57041799 - MGP_C3HHeJ_P0036985 Klhl3 protein_coding protein_coding MGP_C3HHeJ_T0036256.1 MGP_C3HHeJ_G0020125.1 mouse_genomes_project 13 21317659 21318049 + MGP_C3HHeJ_P0036256 Hist1h2aa protein_coding protein_coding MGP_C3HHeJ_T0101719.1 MGP_C3HHeJ_G0039684.1 mouse_genomes_project 13 30906137 30908772 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0036442.1 MGP_C3HHeJ_G0020200.1 mouse_genomes_project 13 32470603 32495300 - MGP_C3HHeJ_P0036442 Pxdc1 protein_coding protein_coding MGP_C3HHeJ_T0036443.1 MGP_C3HHeJ_G0020200.1 mouse_genomes_project 13 32470603 32495310 - MGP_C3HHeJ_P0036443 Pxdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036444.1 MGP_C3HHeJ_G0020200.1 mouse_genomes_project 13 32470604 32495310 - MGP_C3HHeJ_P0036444 Pxdc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036445.1 MGP_C3HHeJ_G0020200.1 mouse_genomes_project 13 32471658 32491048 - MGP_C3HHeJ_P0036445 Pxdc1 protein_coding protein_coding MGP_C3HHeJ_T0037473.1 MGP_C3HHeJ_G0020549.1 mouse_genomes_project 13 91146371 91148165 + MGP_C3HHeJ_P0037473 Rps23 protein_coding protein_coding MGP_C3HHeJ_T0036378.1 MGP_C3HHeJ_G0020174.1 mouse_genomes_project 13 29326351 29329004 + MGP_C3HHeJ_P0036378 Foxq1 protein_coding protein_coding MGP_C3HHeJ_T0009881.1 MGP_C3HHeJ_G0008014.1 mouse_genomes_project 13 114160847 114160938 + Mir449a miRNA miRNA MGP_C3HHeJ_T0037144.1 MGP_C3HHeJ_G0020426.1 mouse_genomes_project 13 63698237 63705309 + MGP_C3HHeJ_P0037144 Cdk20 protein_coding protein_coding MGP_C3HHeJ_T0098027.1 MGP_C3HHeJ_G0036239.1 mouse_genomes_project 13 21051067 21051175 - Gm24991 rRNA rRNA MGP_C3HHeJ_T0037195.1 MGP_C3HHeJ_G0020454.1 mouse_genomes_project 13 66801305 66824798 - MGP_C3HHeJ_P0037195 Zfp953 protein_coding protein_coding MGP_C3HHeJ_T0003426.1 MGP_C3HHeJ_G0003128.1 mouse_genomes_project 13 98886159 98887042 + Gm9828 antisense antisense MGP_C3HHeJ_T0003427.1 MGP_C3HHeJ_G0003128.1 mouse_genomes_project 13 98886806 98891757 + Gm9828 antisense antisense MGP_C3HHeJ_T0003428.1 MGP_C3HHeJ_G0003128.1 mouse_genomes_project 13 98886853 98894683 + Gm9828 antisense antisense MGP_C3HHeJ_T0003429.1 MGP_C3HHeJ_G0003128.1 mouse_genomes_project 13 98888423 98891263 + Gm9828 antisense antisense MGP_C3HHeJ_T0036603.1 MGP_C3HHeJ_G0020262.1 mouse_genomes_project 13 44772853 44922926 + MGP_C3HHeJ_P0036603 Cap2 protein_coding protein_coding MGP_C3HHeJ_T0036604.1 MGP_C3HHeJ_G0020262.1 mouse_genomes_project 13 44911287 44919197 + Cap2 protein_coding processed_transcript MGP_C3HHeJ_T0036480.1 MGP_C3HHeJ_G0020214.1 mouse_genomes_project 13 35248628 35319610 + MGP_C3HHeJ_P0036480 Ly86 protein_coding protein_coding MGP_C3HHeJ_T0017143.1 MGP_C3HHeJ_G0015022.1 mouse_genomes_project 13 112639761 112708539 + Gm15286 processed_transcript processed_transcript MGP_C3HHeJ_T0017144.1 MGP_C3HHeJ_G0015022.1 mouse_genomes_project 13 112680225 112706544 + Gm15286 processed_transcript processed_transcript MGP_C3HHeJ_T0006431.1 MGP_C3HHeJ_G0005336.1 mouse_genomes_project 13 9563655 9609742 - lincRNA lincRNA MGP_C3HHeJ_T0035892.1 MGP_C3HHeJ_G0019941.1 mouse_genomes_project 13 489448 506250 + MGP_C3HHeJ_P0035892 Calm4 protein_coding protein_coding MGP_C3HHeJ_T0098905.1 MGP_C3HHeJ_G0037099.1 mouse_genomes_project 13 96294577 96294736 - Gm24032 snRNA snRNA MGP_C3HHeJ_T0036146.1 MGP_C3HHeJ_G0020043.1 mouse_genomes_project 13 19019998 19021035 - MGP_C3HHeJ_P0036146 Hist1h2ak protein_coding protein_coding MGP_C3HHeJ_T0037336.1 MGP_C3HHeJ_G0020520.1 mouse_genomes_project 13 75854891 75885613 + MGP_C3HHeJ_P0037336 Spata9 protein_coding protein_coding MGP_C3HHeJ_T0037424.1 MGP_C3HHeJ_G0020538.1 mouse_genomes_project 13 84270155 84348223 + MGP_C3HHeJ_P0037424 Tmem161b protein_coding protein_coding MGP_C3HHeJ_T0003423.1 MGP_C3HHeJ_G0003126.1 mouse_genomes_project 13 94018138 94031595 - AW495222 antisense antisense MGP_C3HHeJ_T0003424.1 MGP_C3HHeJ_G0003126.1 mouse_genomes_project 13 94027748 94031554 - AW495222 antisense antisense MGP_C3HHeJ_T0036297.1 MGP_C3HHeJ_G0020134.1 mouse_genomes_project 13 22253812 22310739 + MGP_C3HHeJ_P0036297 D130043K22Rik protein_coding protein_coding MGP_C3HHeJ_T0036298.1 MGP_C3HHeJ_G0020134.1 mouse_genomes_project 13 22253812 22310732 + MGP_C3HHeJ_P0036298 D130043K22Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036299.1 MGP_C3HHeJ_G0020134.1 mouse_genomes_project 13 22263046 22309190 + MGP_C3HHeJ_P0036299 D130043K22Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0036300.1 MGP_C3HHeJ_G0020134.1 mouse_genomes_project 13 22290111 22292246 + D130043K22Rik protein_coding processed_transcript MGP_C3HHeJ_T0036301.1 MGP_C3HHeJ_G0020134.1 mouse_genomes_project 13 22302471 22309239 + D130043K22Rik protein_coding processed_transcript MGP_C3HHeJ_T0100147.1 MGP_C3HHeJ_G0038341.1 mouse_genomes_project 13 46929686 46929818 - Gm25232 snoRNA snoRNA MGP_C3HHeJ_T0003422.1 MGP_C3HHeJ_G0003125.1 mouse_genomes_project 13 93930820 93935964 + Gm15622 antisense antisense MGP_C3HHeJ_T0098892.1 MGP_C3HHeJ_G0037086.1 mouse_genomes_project 13 40000469 40000573 + Gm22157 snRNA snRNA MGP_C3HHeJ_T0000844.1 MGP_C3HHeJ_G0000785.1 mouse_genomes_project 13 35418643 35418984 - TEC TEC MGP_C3HHeJ_T0036963.1 MGP_C3HHeJ_G0020371.1 mouse_genomes_project 13 55489686 55525923 + MGP_C3HHeJ_P0036963 Tgfbi protein_coding protein_coding MGP_C3HHeJ_T0012762.1 MGP_C3HHeJ_G0010866.1 mouse_genomes_project 13 21581463 21582062 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037636.1 MGP_C3HHeJ_G0020603.1 mouse_genomes_project 13 97726320 97739247 + MGP_C3HHeJ_P0037636 Enc1 protein_coding protein_coding MGP_C3HHeJ_T0012786.1 MGP_C3HHeJ_G0010890.1 mouse_genomes_project 13 30922971 30923778 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0037328.1 MGP_C3HHeJ_G0020515.1 mouse_genomes_project 13 74533135 74643557 - MGP_C3HHeJ_P0037328 Cast protein_coding protein_coding MGP_C3HHeJ_T0003361.1 MGP_C3HHeJ_G0003087.1 mouse_genomes_project 13 16372014 16403610 - Gm43385 antisense antisense MGP_C3HHeJ_T0037462.1 MGP_C3HHeJ_G0020545.1 mouse_genomes_project 13 90000522 90312049 - MGP_C3HHeJ_P0037462 Xrcc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0037463.1 MGP_C3HHeJ_G0020545.1 mouse_genomes_project 13 90074668 90312134 - MGP_C3HHeJ_P0037463 Xrcc4 protein_coding protein_coding MGP_C3HHeJ_T0037464.1 MGP_C3HHeJ_G0020545.1 mouse_genomes_project 13 90285336 90312062 - MGP_C3HHeJ_P0037464 Xrcc4 protein_coding protein_coding MGP_C3HHeJ_T0037465.1 MGP_C3HHeJ_G0020545.1 mouse_genomes_project 13 90285371 90311607 - MGP_C3HHeJ_P0037465 Xrcc4 protein_coding protein_coding MGP_C3HHeJ_T0036475.1 MGP_C3HHeJ_G0020211.1 mouse_genomes_project 13 34060296 34401102 + MGP_C3HHeJ_P0036475 Fars2 protein_coding protein_coding MGP_C3HHeJ_T0012802.1 MGP_C3HHeJ_G0010906.1 mouse_genomes_project 13 67180780 67181616 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036239.1 MGP_C3HHeJ_G0020114.1 mouse_genomes_project 13 21130961 21131581 + MGP_C3HHeJ_P0036239 Hist1h3b protein_coding protein_coding MGP_C3HHeJ_T0036510.1 MGP_C3HHeJ_G0020224.1 mouse_genomes_project 13 36611067 36624206 - MGP_C3HHeJ_P0036510 Eef1e1 protein_coding protein_coding MGP_C3HHeJ_T0003421.1 MGP_C3HHeJ_G0003124.1 mouse_genomes_project 13 92693418 92705584 - C030017D09Rik antisense antisense MGP_C3HHeJ_T0006557.1 MGP_C3HHeJ_G0005424.1 mouse_genomes_project 13 112912182 112914474 - Gm15325 lincRNA lincRNA MGP_C3HHeJ_T0006517.1 MGP_C3HHeJ_G0005395.1 mouse_genomes_project 13 72361074 72361905 - Gm20554 lincRNA lincRNA MGP_C3HHeJ_T0011260.1 MGP_C3HHeJ_G0009393.1 mouse_genomes_project 13 55592386 55592635 + Gm27698 misc_RNA misc_RNA MGP_C3HHeJ_T0006548.1 MGP_C3HHeJ_G0005416.1 mouse_genomes_project 13 100021748 100026608 - lincRNA lincRNA MGP_C3HHeJ_T0037865.1 MGP_C3HHeJ_G0020669.1 mouse_genomes_project 13 111387058 111393811 + MGP_C3HHeJ_P0037865 Plk2 protein_coding protein_coding MGP_C3HHeJ_T0036659.1 MGP_C3HHeJ_G0020279.1 mouse_genomes_project 13 47574586 47583345 + MGP_C3HHeJ_P0036659 Ninj1 protein_coding protein_coding MGP_C3HHeJ_T0036660.1 MGP_C3HHeJ_G0020279.1 mouse_genomes_project 13 47574626 47583345 + MGP_C3HHeJ_P0036660 Ninj1 protein_coding protein_coding MGP_C3HHeJ_T0036661.1 MGP_C3HHeJ_G0020279.1 mouse_genomes_project 13 47574637 47582860 + MGP_C3HHeJ_P0036661 Ninj1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036662.1 MGP_C3HHeJ_G0020279.1 mouse_genomes_project 13 47574868 47582025 + Ninj1 protein_coding processed_transcript MGP_C3HHeJ_T0036663.1 MGP_C3HHeJ_G0020279.1 mouse_genomes_project 13 47577396 47583345 + Ninj1 protein_coding processed_transcript MGP_C3HHeJ_T0036910.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54327463 54345126 - MGP_C3HHeJ_P0036910 Pdlim7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0036911.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54329158 54345122 - Pdlim7 protein_coding retained_intron MGP_C3HHeJ_T0036912.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54330076 54338064 - MGP_C3HHeJ_P0036912 Pdlim7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036913.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54330080 54345125 - Pdlim7 protein_coding retained_intron MGP_C3HHeJ_T0036914.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54330084 54345134 - MGP_C3HHeJ_P0036914 Pdlim7 protein_coding protein_coding MGP_C3HHeJ_T0036915.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54338423 54345126 - MGP_C3HHeJ_P0036915 Pdlim7 protein_coding protein_coding MGP_C3HHeJ_T0036916.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54338424 54345126 - MGP_C3HHeJ_P0036916 Pdlim7 protein_coding protein_coding MGP_C3HHeJ_T0036917.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54338424 54345122 - MGP_C3HHeJ_P0036917 Pdlim7 protein_coding protein_coding MGP_C3HHeJ_T0036918.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54339202 54340708 - Pdlim7 protein_coding retained_intron MGP_C3HHeJ_T0036919.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54339883 54345364 - MGP_C3HHeJ_P0036919 Pdlim7 protein_coding protein_coding MGP_C3HHeJ_T0036920.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54340497 54345109 - Pdlim7 protein_coding retained_intron MGP_C3HHeJ_T0036921.1 MGP_C3HHeJ_G0020349.1 mouse_genomes_project 13 54340653 54344397 - MGP_C3HHeJ_P0036921 Pdlim7 protein_coding protein_coding MGP_C3HHeJ_T0036113.1 MGP_C3HHeJ_G0020020.1 mouse_genomes_project 13 18672611 18692169 - MGP_C3HHeJ_P0036113 protein_coding protein_coding MGP_C3HHeJ_T0036114.1 MGP_C3HHeJ_G0020020.1 mouse_genomes_project 13 18672614 18691978 - MGP_C3HHeJ_P0036114 protein_coding protein_coding MGP_C3HHeJ_T0036115.1 MGP_C3HHeJ_G0020020.1 mouse_genomes_project 13 18673186 18692312 - MGP_C3HHeJ_P0036115 protein_coding protein_coding MGP_C3HHeJ_T0036116.1 MGP_C3HHeJ_G0020020.1 mouse_genomes_project 13 18673186 18692326 - MGP_C3HHeJ_P0036116 protein_coding protein_coding MGP_C3HHeJ_T0036117.1 MGP_C3HHeJ_G0020020.1 mouse_genomes_project 13 18674528 18691978 - MGP_C3HHeJ_P0036117 protein_coding protein_coding MGP_C3HHeJ_T0101698.1 MGP_C3HHeJ_G0039663.1 mouse_genomes_project 13 20030538 20031644 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012790.1 MGP_C3HHeJ_G0010894.1 mouse_genomes_project 13 38836966 38838291 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0036793.1 MGP_C3HHeJ_G0020322.1 mouse_genomes_project 13 53369302 53370254 + MGP_C3HHeJ_P0036793 Higd2a protein_coding protein_coding MGP_C3HHeJ_T0036197.1 MGP_C3HHeJ_G0020082.1 mouse_genomes_project 13 20163199 20164273 - MGP_C3HHeJ_P0036197 Vmn1r212 protein_coding protein_coding MGP_C3HHeJ_T0037289.1 MGP_C3HHeJ_G0020499.1 mouse_genomes_project 13 73575085 73604844 - MGP_C3HHeJ_P0037289 Nkd2 protein_coding protein_coding MGP_C3HHeJ_T0037290.1 MGP_C3HHeJ_G0020499.1 mouse_genomes_project 13 73576245 73604825 - MGP_C3HHeJ_P0037290 Nkd2 protein_coding protein_coding MGP_C3HHeJ_T0037291.1 MGP_C3HHeJ_G0020499.1 mouse_genomes_project 13 73580088 73604825 - Nkd2 protein_coding retained_intron MGP_C3HHeJ_T0101694.1 MGP_C3HHeJ_G0039659.1 mouse_genomes_project 13 19784992 19785357 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0098880.1 MGP_C3HHeJ_G0037074.1 mouse_genomes_project 13 14990407 14990514 - Gm24018 snRNA snRNA MGP_C3HHeJ_T0037387.1 MGP_C3HHeJ_G0020533.1 mouse_genomes_project 13 81655644 81667642 + MGP_C3HHeJ_P0037387 Lysmd3 protein_coding protein_coding MGP_C3HHeJ_T0037066.1 MGP_C3HHeJ_G0020393.1 mouse_genomes_project 13 58776137 58828064 - MGP_C3HHeJ_P0037066 Zcchc6 protein_coding protein_coding MGP_C3HHeJ_T0037067.1 MGP_C3HHeJ_G0020393.1 mouse_genomes_project 13 58777050 58826996 - MGP_C3HHeJ_P0037067 Zcchc6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0002449.1 MGP_C3HHeJ_G0002367.1 mouse_genomes_project 13 16434557 16463384 + MGP_C3HHeJ_P0002449 Tcrg-C2 TR_C_gene TR_C_gene MGP_C3HHeJ_T0037963.1 MGP_C3HHeJ_G0020710.1 mouse_genomes_project 13 120815440 120840518 + MGP_C3HHeJ_P0037963 4833420G17Rik protein_coding protein_coding MGP_C3HHeJ_T0036435.1 MGP_C3HHeJ_G0020197.1 mouse_genomes_project 13 31972671 31979758 - MGP_C3HHeJ_P0036435 protein_coding protein_coding MGP_C3HHeJ_T0036930.1 MGP_C3HHeJ_G0020355.1 mouse_genomes_project 13 54456070 54465097 + MGP_C3HHeJ_P0036930 Caml protein_coding protein_coding MGP_C3HHeJ_T0036931.1 MGP_C3HHeJ_G0020355.1 mouse_genomes_project 13 54456263 54458314 + Caml protein_coding retained_intron MGP_C3HHeJ_T0036932.1 MGP_C3HHeJ_G0020355.1 mouse_genomes_project 13 54460970 54465097 + Caml protein_coding retained_intron MGP_C3HHeJ_T0036493.1 MGP_C3HHeJ_G0020216.1 mouse_genomes_project 13 35896632 35923716 - MGP_C3HHeJ_P0036493 Ssr1 protein_coding protein_coding MGP_C3HHeJ_T0006449.1 MGP_C3HHeJ_G0005349.1 mouse_genomes_project 13 28368850 28378002 + 4930519D14Rik lincRNA lincRNA MGP_C3HHeJ_T0100129.1 MGP_C3HHeJ_G0038323.1 mouse_genomes_project 13 1890849 1890981 - Gm24790 snoRNA snoRNA MGP_C3HHeJ_T0037594.1 MGP_C3HHeJ_G0020591.1 mouse_genomes_project 13 96489972 96490821 + protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0036696.1 MGP_C3HHeJ_G0020294.1 mouse_genomes_project 13 48440157 48440514 - MGP_C3HHeJ_P0036696 Gm17611 protein_coding protein_coding MGP_C3HHeJ_T0037740.1 MGP_C3HHeJ_G0020638.1 mouse_genomes_project 13 103451874 103475118 + MGP_C3HHeJ_P0037740 Cd180 protein_coding protein_coding MGP_C3HHeJ_T0037741.1 MGP_C3HHeJ_G0020638.1 mouse_genomes_project 13 103451881 103462530 + MGP_C3HHeJ_P0037741 Cd180 protein_coding protein_coding MGP_C3HHeJ_T0037742.1 MGP_C3HHeJ_G0020638.1 mouse_genomes_project 13 103451889 103463334 + MGP_C3HHeJ_P0037742 Cd180 protein_coding protein_coding MGP_C3HHeJ_T0037743.1 MGP_C3HHeJ_G0020638.1 mouse_genomes_project 13 103451895 103509060 + MGP_C3HHeJ_P0037743 Cd180 protein_coding protein_coding MGP_C3HHeJ_T0037744.1 MGP_C3HHeJ_G0020638.1 mouse_genomes_project 13 103451927 103508935 + MGP_C3HHeJ_P0037744 Cd180 protein_coding protein_coding MGP_C3HHeJ_T0037233.1 MGP_C3HHeJ_G0020476.1 mouse_genomes_project 13 68232528 68242579 + MGP_C3HHeJ_P0037233 Fastkd3 protein_coding protein_coding MGP_C3HHeJ_T0037234.1 MGP_C3HHeJ_G0020476.1 mouse_genomes_project 13 68232530 68242587 + MGP_C3HHeJ_P0037234 Fastkd3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0036186.1 MGP_C3HHeJ_G0020071.1 mouse_genomes_project 13 19649195 19650098 + MGP_C3HHeJ_P0036186 Vmn1r198 protein_coding protein_coding MGP_C3HHeJ_T0006705.1 MGP_C3HHeJ_G0005526.1 mouse_genomes_project 15 82896834 82907310 + lincRNA lincRNA MGP_C3HHeJ_T0041173.1 MGP_C3HHeJ_G0021742.1 mouse_genomes_project 15 75982691 75999351 - MGP_C3HHeJ_P0041173 Cyhr1 protein_coding protein_coding MGP_C3HHeJ_T0041174.1 MGP_C3HHeJ_G0021742.1 mouse_genomes_project 15 75986221 75996216 - MGP_C3HHeJ_P0041174 Cyhr1 protein_coding protein_coding MGP_C3HHeJ_T0041175.1 MGP_C3HHeJ_G0021742.1 mouse_genomes_project 15 75997435 75999407 - MGP_C3HHeJ_P0041175 Cyhr1 protein_coding protein_coding MGP_C3HHeJ_T0041176.1 MGP_C3HHeJ_G0021742.1 mouse_genomes_project 15 75997439 75999398 - MGP_C3HHeJ_P0041176 Cyhr1 protein_coding protein_coding MGP_C3HHeJ_T0100273.1 MGP_C3HHeJ_G0038467.1 mouse_genomes_project 15 95545642 95545774 - Gm23129 snoRNA snoRNA MGP_C3HHeJ_T0099007.1 MGP_C3HHeJ_G0037201.1 mouse_genomes_project 15 85398657 85398849 - Gm23517 snRNA snRNA MGP_C3HHeJ_T0040924.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092191 74097250 + MGP_C3HHeJ_P0040924 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040925.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092191 74097248 + MGP_C3HHeJ_P0040925 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040926.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092211 74097250 + MGP_C3HHeJ_P0040926 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040927.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092245 74096121 + MGP_C3HHeJ_P0040927 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040928.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092281 74095734 + MGP_C3HHeJ_P0040928 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040929.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092303 74096101 + MGP_C3HHeJ_P0040929 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040930.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092317 74096000 + MGP_C3HHeJ_P0040930 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040931.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092325 74096072 + MGP_C3HHeJ_P0040931 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040932.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092380 74095938 + MGP_C3HHeJ_P0040932 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040933.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092399 74096005 + MGP_C3HHeJ_P0040933 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040934.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092792 74096676 + MGP_C3HHeJ_P0040934 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040935.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092805 74096374 + Ly6e protein_coding retained_intron MGP_C3HHeJ_T0040936.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092807 74096676 + Ly6e protein_coding retained_intron MGP_C3HHeJ_T0040937.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092811 74095955 + MGP_C3HHeJ_P0040937 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0040938.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74092822 74093637 + Ly6e protein_coding retained_intron MGP_C3HHeJ_T0040939.1 MGP_C3HHeJ_G0021684.1 mouse_genomes_project 15 74093699 74096171 + MGP_C3HHeJ_P0040939 Ly6e protein_coding protein_coding MGP_C3HHeJ_T0041009.1 MGP_C3HHeJ_G0021708.1 mouse_genomes_project 15 75301061 75303645 - MGP_C3HHeJ_P0041009 Ccdc166 protein_coding protein_coding MGP_C3HHeJ_T0041010.1 MGP_C3HHeJ_G0021708.1 mouse_genomes_project 15 75301956 75303632 - MGP_C3HHeJ_P0041010 Ccdc166 protein_coding protein_coding MGP_C3HHeJ_T0012928.1 MGP_C3HHeJ_G0011032.1 mouse_genomes_project 15 34772561 34792323 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041657.1 MGP_C3HHeJ_G0021883.1 mouse_genomes_project 15 82186642 82196261 - MGP_C3HHeJ_P0041657 Cyp2d22 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041137.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75840497 75850408 - MGP_C3HHeJ_P0041137 Dgat1 protein_coding protein_coding MGP_C3HHeJ_T0041138.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75840499 75841663 - Dgat1 protein_coding retained_intron MGP_C3HHeJ_T0041139.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75840550 75841797 - Dgat1 protein_coding retained_intron MGP_C3HHeJ_T0041140.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75841006 75842428 - MGP_C3HHeJ_P0041140 Dgat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041141.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75841758 75845088 - MGP_C3HHeJ_P0041141 Dgat1 protein_coding protein_coding MGP_C3HHeJ_T0041142.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75842073 75842805 - Dgat1 protein_coding retained_intron MGP_C3HHeJ_T0041143.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75842384 75843678 - Dgat1 protein_coding retained_intron MGP_C3HHeJ_T0041144.1 MGP_C3HHeJ_G0021734.1 mouse_genomes_project 15 75842434 75843146 - Dgat1 protein_coding retained_intron MGP_C3HHeJ_T0040457.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32330221 32333380 - Rpl30 protein_coding processed_transcript MGP_C3HHeJ_T0040458.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32330221 32333632 - Rpl30 protein_coding retained_intron MGP_C3HHeJ_T0040459.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32330221 32334112 - MGP_C3HHeJ_P0040459 Rpl30 protein_coding protein_coding MGP_C3HHeJ_T0040460.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32330226 32333694 - MGP_C3HHeJ_P0040460 Rpl30 protein_coding protein_coding MGP_C3HHeJ_T0040461.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32330271 32332762 - MGP_C3HHeJ_P0040461 Rpl30 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040462.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32330291 32331382 - Rpl30 protein_coding retained_intron MGP_C3HHeJ_T0040463.1 MGP_C3HHeJ_G0021521.1 mouse_genomes_project 15 32332992 32333731 - Rpl30 protein_coding processed_transcript MGP_C3HHeJ_T0040183.1 MGP_C3HHeJ_G0021437.1 mouse_genomes_project 15 2103085 2137636 + MGP_C3HHeJ_P0040183 Ttc33 protein_coding protein_coding MGP_C3HHeJ_T0040184.1 MGP_C3HHeJ_G0021437.1 mouse_genomes_project 15 2103495 2137337 + MGP_C3HHeJ_P0040184 Ttc33 protein_coding protein_coding MGP_C3HHeJ_T0040185.1 MGP_C3HHeJ_G0021437.1 mouse_genomes_project 15 2104686 2131150 + MGP_C3HHeJ_P0040185 Ttc33 protein_coding protein_coding MGP_C3HHeJ_T0040344.1 MGP_C3HHeJ_G0021479.1 mouse_genomes_project 15 9461482 9461944 - MGP_C3HHeJ_P0040344 1810049J17Rik protein_coding protein_coding MGP_C3HHeJ_T0012941.1 MGP_C3HHeJ_G0011045.1 mouse_genomes_project 15 53231450 53232432 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099019.1 MGP_C3HHeJ_G0037213.1 mouse_genomes_project 15 103641271 103641370 + Gm24128 snRNA snRNA MGP_C3HHeJ_T0040978.1 MGP_C3HHeJ_G0021698.1 mouse_genomes_project 15 75067849 75160117 - MGP_C3HHeJ_P0040978 Zc3h3 protein_coding protein_coding MGP_C3HHeJ_T0040437.1 MGP_C3HHeJ_G0021512.1 mouse_genomes_project 15 30022546 30023552 + MGP_C3HHeJ_P0040437 Tas2r119 protein_coding protein_coding MGP_C3HHeJ_T0011293.1 MGP_C3HHeJ_G0009426.1 mouse_genomes_project 15 60750733 60750906 + Gm27913 misc_RNA misc_RNA MGP_C3HHeJ_T0041924.1 MGP_C3HHeJ_G0021964.1 mouse_genomes_project 15 89674385 89676567 - MGP_C3HHeJ_P0041924 Sco2 protein_coding protein_coding MGP_C3HHeJ_T0017258.1 MGP_C3HHeJ_G0015070.1 mouse_genomes_project 15 89838305 89841887 - Gm15609 processed_transcript processed_transcript MGP_C3HHeJ_T0041134.1 MGP_C3HHeJ_G0021732.1 mouse_genomes_project 15 75793881 75795912 + MGP_C3HHeJ_P0041134 Scx protein_coding protein_coding MGP_C3HHeJ_T0041972.1 MGP_C3HHeJ_G0021978.1 mouse_genomes_project 15 90573913 90580157 + MGP_C3HHeJ_P0041972 Alg10b protein_coding protein_coding MGP_C3HHeJ_T0040221.1 MGP_C3HHeJ_G0021444.1 mouse_genomes_project 15 4102333 4166479 + MGP_C3HHeJ_P0040221 Lifr protein_coding protein_coding MGP_C3HHeJ_T0040222.1 MGP_C3HHeJ_G0021444.1 mouse_genomes_project 15 4102346 4160071 + MGP_C3HHeJ_P0040222 Lifr protein_coding protein_coding MGP_C3HHeJ_T0040223.1 MGP_C3HHeJ_G0021444.1 mouse_genomes_project 15 4128607 4172213 + MGP_C3HHeJ_P0040223 Lifr protein_coding protein_coding MGP_C3HHeJ_T0042407.1 MGP_C3HHeJ_G0022130.1 mouse_genomes_project 15 103232580 103255802 + MGP_C3HHeJ_P0042407 Eif4b protein_coding protein_coding MGP_C3HHeJ_T0006723.1 MGP_C3HHeJ_G0005536.1 mouse_genomes_project 15 99620910 99631089 + B130046B21Rik lincRNA lincRNA MGP_C3HHeJ_T0101358.1 MGP_C3HHeJ_G0039428.1 mouse_genomes_project 15 62619878 62622231 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101359.1 MGP_C3HHeJ_G0039428.1 mouse_genomes_project 15 62619892 62622111 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0041149.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909301 75931415 + MGP_C3HHeJ_P0041149 Adck5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041150.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909321 75931423 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041151.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909347 75927430 + Adck5 protein_coding processed_transcript MGP_C3HHeJ_T0041152.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909354 75931416 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041153.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909355 75925332 + Adck5 protein_coding processed_transcript MGP_C3HHeJ_T0041154.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909416 75931257 + MGP_C3HHeJ_P0041154 Adck5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041155.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75909425 75931407 + MGP_C3HHeJ_P0041155 Adck5 protein_coding protein_coding MGP_C3HHeJ_T0041156.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75929044 75929777 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041157.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75929507 75930763 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041158.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75929774 75930795 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041159.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75929899 75931423 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041160.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75930428 75930770 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0041161.1 MGP_C3HHeJ_G0021738.1 mouse_genomes_project 15 75930570 75931323 + Adck5 protein_coding retained_intron MGP_C3HHeJ_T0042388.1 MGP_C3HHeJ_G0022113.1 mouse_genomes_project 15 102669200 102679778 - MGP_C3HHeJ_P0042388 Krt90 protein_coding protein_coding MGP_C3HHeJ_T0010002.1 MGP_C3HHeJ_G0008135.1 mouse_genomes_project 15 89599318 89599393 - Mir6959 miRNA miRNA MGP_C3HHeJ_T0042177.1 MGP_C3HHeJ_G0022046.1 mouse_genomes_project 15 99627884 99647192 - MGP_C3HHeJ_P0042177 Prkag1 protein_coding protein_coding MGP_C3HHeJ_T0041602.1 MGP_C3HHeJ_G0021864.1 mouse_genomes_project 15 81720424 81734628 + MGP_C3HHeJ_P0041602 Csdc2 protein_coding protein_coding MGP_C3HHeJ_T0041603.1 MGP_C3HHeJ_G0021864.1 mouse_genomes_project 15 81720655 81730561 + MGP_C3HHeJ_P0041603 Csdc2 protein_coding protein_coding MGP_C3HHeJ_T0041604.1 MGP_C3HHeJ_G0021864.1 mouse_genomes_project 15 81729422 81730579 + Csdc2 protein_coding processed_transcript MGP_C3HHeJ_T0041605.1 MGP_C3HHeJ_G0021864.1 mouse_genomes_project 15 81730652 81734621 + Csdc2 protein_coding retained_intron MGP_C3HHeJ_T0003570.1 MGP_C3HHeJ_G0003233.1 mouse_genomes_project 15 101621783 101624488 + antisense antisense MGP_C3HHeJ_T0099020.1 MGP_C3HHeJ_G0037214.1 mouse_genomes_project 15 103823835 103823942 - Gm25141 snRNA snRNA MGP_C3HHeJ_T0042396.1 MGP_C3HHeJ_G0022120.1 mouse_genomes_project 15 102930599 102939609 - MGP_C3HHeJ_P0042396 Krt73 protein_coding protein_coding MGP_C3HHeJ_T0040339.1 MGP_C3HHeJ_G0021478.1 mouse_genomes_project 15 9337538 9406272 + MGP_C3HHeJ_P0040339 Mtmr12 protein_coding protein_coding MGP_C3HHeJ_T0040340.1 MGP_C3HHeJ_G0021478.1 mouse_genomes_project 15 9337595 9406026 + MGP_C3HHeJ_P0040340 Mtmr12 protein_coding protein_coding MGP_C3HHeJ_T0040341.1 MGP_C3HHeJ_G0021478.1 mouse_genomes_project 15 9337614 9406151 + MGP_C3HHeJ_P0040341 Mtmr12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040342.1 MGP_C3HHeJ_G0021478.1 mouse_genomes_project 15 9337628 9406269 + MGP_C3HHeJ_P0040342 Mtmr12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040343.1 MGP_C3HHeJ_G0021478.1 mouse_genomes_project 15 9357316 9378980 + Mtmr12 protein_coding processed_transcript MGP_C3HHeJ_T0017233.1 MGP_C3HHeJ_G0015056.1 mouse_genomes_project 15 56777853 56890774 + Gm15943 processed_transcript processed_transcript MGP_C3HHeJ_T0040271.1 MGP_C3HHeJ_G0021457.1 mouse_genomes_project 15 6361248 6403800 + MGP_C3HHeJ_P0040271 Ugt3a2 protein_coding protein_coding MGP_C3HHeJ_T0040272.1 MGP_C3HHeJ_G0021457.1 mouse_genomes_project 15 6361287 6395792 + Ugt3a2 protein_coding retained_intron MGP_C3HHeJ_T0041063.1 MGP_C3HHeJ_G0021720.1 mouse_genomes_project 15 75623619 75626082 + MGP_C3HHeJ_P0041063 Smpd5 protein_coding protein_coding MGP_C3HHeJ_T0041064.1 MGP_C3HHeJ_G0021720.1 mouse_genomes_project 15 75624153 75625438 + MGP_C3HHeJ_P0041064 Smpd5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041065.1 MGP_C3HHeJ_G0021720.1 mouse_genomes_project 15 75624436 75626079 + Smpd5 protein_coding retained_intron MGP_C3HHeJ_T0041066.1 MGP_C3HHeJ_G0021720.1 mouse_genomes_project 15 75624494 75625059 + Smpd5 protein_coding retained_intron MGP_C3HHeJ_T0098978.1 MGP_C3HHeJ_G0037172.1 mouse_genomes_project 15 34179453 34179516 + Gm23754 snRNA snRNA MGP_C3HHeJ_T0006711.1 MGP_C3HHeJ_G0005529.1 mouse_genomes_project 15 85704097 85710236 + D130051D11Rik lincRNA lincRNA MGP_C3HHeJ_T0042052.1 MGP_C3HHeJ_G0022004.1 mouse_genomes_project 15 97040030 97088813 - MGP_C3HHeJ_P0042052 Scaf11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042053.1 MGP_C3HHeJ_G0022004.1 mouse_genomes_project 15 97040032 97088963 - MGP_C3HHeJ_P0042053 Scaf11 protein_coding protein_coding MGP_C3HHeJ_T0010003.1 MGP_C3HHeJ_G0008136.1 mouse_genomes_project 15 90573962 90574015 + Mir7648 miRNA miRNA MGP_C3HHeJ_T0041250.1 MGP_C3HHeJ_G0021769.1 mouse_genomes_project 15 77339433 77344699 - MGP_C3HHeJ_P0041250 Apol8 protein_coding protein_coding MGP_C3HHeJ_T0041251.1 MGP_C3HHeJ_G0021769.1 mouse_genomes_project 15 77340247 77346854 - MGP_C3HHeJ_P0041251 Apol8 protein_coding protein_coding MGP_C3HHeJ_T0006699.1 MGP_C3HHeJ_G0005521.1 mouse_genomes_project 15 78490275 78494130 - Gm26634 lincRNA lincRNA MGP_C3HHeJ_T0041415.1 MGP_C3HHeJ_G0021815.1 mouse_genomes_project 15 79193594 79212566 - MGP_C3HHeJ_P0041415 Ddx17 protein_coding protein_coding MGP_C3HHeJ_T0042462.1 MGP_C3HHeJ_G0022146.1 mouse_genomes_project 15 103630003 103639450 + MGP_C3HHeJ_P0042462 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042463.1 MGP_C3HHeJ_G0022146.1 mouse_genomes_project 15 103637106 103639489 + MGP_C3HHeJ_P0042463 protein_coding protein_coding MGP_C3HHeJ_T0042464.1 MGP_C3HHeJ_G0022146.1 mouse_genomes_project 15 103637270 103637819 + protein_coding retained_intron MGP_C3HHeJ_T0040214.1 MGP_C3HHeJ_G0021442.1 mouse_genomes_project 15 3666731 3765289 + MGP_C3HHeJ_P0040214 Rictor protein_coding protein_coding MGP_C3HHeJ_T0042198.1 MGP_C3HHeJ_G0022055.1 mouse_genomes_project 15 99934693 99942435 + Dnajc22 protein_coding processed_transcript MGP_C3HHeJ_T0042199.1 MGP_C3HHeJ_G0022055.1 mouse_genomes_project 15 99940933 99946283 + MGP_C3HHeJ_P0042199 Dnajc22 protein_coding protein_coding MGP_C3HHeJ_T0042296.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101395490 101430368 - MGP_C3HHeJ_P0042296 Slc11a2 protein_coding protein_coding MGP_C3HHeJ_T0042297.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101400030 101430315 - MGP_C3HHeJ_P0042297 Slc11a2 protein_coding protein_coding MGP_C3HHeJ_T0042298.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101405061 101410711 - MGP_C3HHeJ_P0042298 Slc11a2 protein_coding protein_coding MGP_C3HHeJ_T0042299.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101405249 101410890 - Slc11a2 protein_coding retained_intron MGP_C3HHeJ_T0042300.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101413773 101432385 - MGP_C3HHeJ_P0042300 Slc11a2 protein_coding protein_coding MGP_C3HHeJ_T0042301.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101415607 101430282 - MGP_C3HHeJ_P0042301 Slc11a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042302.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101416736 101431527 - MGP_C3HHeJ_P0042302 Slc11a2 protein_coding protein_coding MGP_C3HHeJ_T0042303.1 MGP_C3HHeJ_G0022086.1 mouse_genomes_project 15 101417581 101431405 - MGP_C3HHeJ_P0042303 Slc11a2 protein_coding protein_coding MGP_C3HHeJ_T0042568.1 MGP_C3HHeJ_G0022178.1 mouse_genomes_project 15 104800438 104808092 - MGP_C3HHeJ_P0042568 Ppp1r1a protein_coding protein_coding MGP_C3HHeJ_T0041267.1 MGP_C3HHeJ_G0021772.1 mouse_genomes_project 15 77529707 77545834 - MGP_C3HHeJ_P0041267 Foxred2 protein_coding protein_coding MGP_C3HHeJ_T0041268.1 MGP_C3HHeJ_G0021772.1 mouse_genomes_project 15 77529711 77535075 - Foxred2 protein_coding retained_intron MGP_C3HHeJ_T0041269.1 MGP_C3HHeJ_G0021772.1 mouse_genomes_project 15 77530205 77545787 - MGP_C3HHeJ_P0041269 Foxred2 protein_coding protein_coding MGP_C3HHeJ_T0041270.1 MGP_C3HHeJ_G0021772.1 mouse_genomes_project 15 77541914 77545795 - Foxred2 protein_coding retained_intron MGP_C3HHeJ_T0040775.1 MGP_C3HHeJ_G0021637.1 mouse_genomes_project 15 63567964 63795107 - MGP_C3HHeJ_P0040775 Adcy8 protein_coding protein_coding MGP_C3HHeJ_T0041443.1 MGP_C3HHeJ_G0021825.1 mouse_genomes_project 15 79464338 79508454 - MGP_C3HHeJ_P0041443 Npcd protein_coding protein_coding MGP_C3HHeJ_T0041444.1 MGP_C3HHeJ_G0021825.1 mouse_genomes_project 15 79464338 79508454 - MGP_C3HHeJ_P0041444 Npcd protein_coding protein_coding MGP_C3HHeJ_T0012967.1 MGP_C3HHeJ_G0011071.1 mouse_genomes_project 15 92233725 92234262 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041427.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79397401 79416424 - Sun2 protein_coding retained_intron MGP_C3HHeJ_T0041428.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79397401 79416502 - MGP_C3HHeJ_P0041428 Sun2 protein_coding protein_coding MGP_C3HHeJ_T0041429.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79397402 79416472 - MGP_C3HHeJ_P0041429 Sun2 protein_coding protein_coding MGP_C3HHeJ_T0041430.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79397404 79416504 - MGP_C3HHeJ_P0041430 Sun2 protein_coding protein_coding MGP_C3HHeJ_T0041431.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79402931 79416472 - Sun2 protein_coding retained_intron MGP_C3HHeJ_T0041432.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79407311 79409155 - Sun2 protein_coding retained_intron MGP_C3HHeJ_T0041433.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79412617 79416083 - MGP_C3HHeJ_P0041433 Sun2 protein_coding protein_coding MGP_C3HHeJ_T0041434.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79413699 79416071 - MGP_C3HHeJ_P0041434 Sun2 protein_coding protein_coding MGP_C3HHeJ_T0041435.1 MGP_C3HHeJ_G0021822.1 mouse_genomes_project 15 79413806 79416060 - MGP_C3HHeJ_P0041435 Sun2 protein_coding protein_coding MGP_C3HHeJ_T0041381.1 MGP_C3HHeJ_G0021808.1 mouse_genomes_project 15 78900037 78931295 - MGP_C3HHeJ_P0041381 Baiap2l2 protein_coding protein_coding MGP_C3HHeJ_T0041382.1 MGP_C3HHeJ_G0021808.1 mouse_genomes_project 15 78900038 78931200 - MGP_C3HHeJ_P0041382 Baiap2l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041383.1 MGP_C3HHeJ_G0021808.1 mouse_genomes_project 15 78900174 78902750 - Baiap2l2 protein_coding processed_transcript MGP_C3HHeJ_T0041384.1 MGP_C3HHeJ_G0021808.1 mouse_genomes_project 15 78903114 78904696 - Baiap2l2 protein_coding processed_transcript MGP_C3HHeJ_T0041385.1 MGP_C3HHeJ_G0021808.1 mouse_genomes_project 15 78913586 78931251 - MGP_C3HHeJ_P0041385 Baiap2l2 protein_coding protein_coding MGP_C3HHeJ_T0101762.1 MGP_C3HHeJ_G0039727.1 mouse_genomes_project 15 74579939 74582115 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009944.1 MGP_C3HHeJ_G0008077.1 mouse_genomes_project 15 11993434 11993666 - Gm24080 miRNA miRNA MGP_C3HHeJ_T0041756.1 MGP_C3HHeJ_G0021914.1 mouse_genomes_project 15 84560067 84564488 - MGP_C3HHeJ_P0041756 Ldoc1l protein_coding protein_coding MGP_C3HHeJ_T0042178.1 MGP_C3HHeJ_G0022047.1 mouse_genomes_project 15 99647351 99687407 - MGP_C3HHeJ_P0042178 Kmt2d protein_coding protein_coding MGP_C3HHeJ_T0042179.1 MGP_C3HHeJ_G0022047.1 mouse_genomes_project 15 99647351 99687300 - MGP_C3HHeJ_P0042179 Kmt2d protein_coding unknown_likely_coding MGP_C3HHeJ_T0042180.1 MGP_C3HHeJ_G0022047.1 mouse_genomes_project 15 99647355 99687425 - MGP_C3HHeJ_P0042180 Kmt2d protein_coding protein_coding MGP_C3HHeJ_T0042181.1 MGP_C3HHeJ_G0022047.1 mouse_genomes_project 15 99650036 99652857 - MGP_C3HHeJ_P0042181 Kmt2d protein_coding protein_coding MGP_C3HHeJ_T0042182.1 MGP_C3HHeJ_G0022047.1 mouse_genomes_project 15 99670441 99672037 - MGP_C3HHeJ_P0042182 Kmt2d protein_coding protein_coding MGP_C3HHeJ_T0006659.1 MGP_C3HHeJ_G0005497.1 mouse_genomes_project 15 9083488 9088688 + 1700047G03Rik lincRNA lincRNA MGP_C3HHeJ_T0006660.1 MGP_C3HHeJ_G0005497.1 mouse_genomes_project 15 9083549 9089297 + 1700047G03Rik lincRNA lincRNA MGP_C3HHeJ_T0006661.1 MGP_C3HHeJ_G0005497.1 mouse_genomes_project 15 9083636 9088719 + 1700047G03Rik lincRNA lincRNA MGP_C3HHeJ_T0006662.1 MGP_C3HHeJ_G0005497.1 mouse_genomes_project 15 9086274 9089282 + 1700047G03Rik lincRNA lincRNA MGP_C3HHeJ_T0006733.1 MGP_C3HHeJ_G0005545.1 mouse_genomes_project 15 104327571 104338395 - lincRNA lincRNA MGP_C3HHeJ_T0041305.1 MGP_C3HHeJ_G0021786.1 mouse_genomes_project 15 78164649 78180488 - MGP_C3HHeJ_P0041305 Rac2 protein_coding protein_coding MGP_C3HHeJ_T0101755.1 MGP_C3HHeJ_G0039720.1 mouse_genomes_project 15 74473524 74476682 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0040628.1 MGP_C3HHeJ_G0021583.1 mouse_genomes_project 15 51155107 51177148 + MGP_C3HHeJ_P0040628 Med30 protein_coding protein_coding MGP_C3HHeJ_T0098974.1 MGP_C3HHeJ_G0037168.1 mouse_genomes_project 15 22442582 22442739 - Gm22810 snRNA snRNA MGP_C3HHeJ_T0101143.1 MGP_C3HHeJ_G0039305.1 mouse_genomes_project 15 78897322 78897839 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099017.1 MGP_C3HHeJ_G0037211.1 mouse_genomes_project 15 100841009 100841144 - Gm23133 snRNA snRNA MGP_C3HHeJ_T0098969.1 MGP_C3HHeJ_G0037163.1 mouse_genomes_project 15 5223604 5223715 + Gm24144 snRNA snRNA MGP_C3HHeJ_T0040870.1 MGP_C3HHeJ_G0021663.1 mouse_genomes_project 15 72811405 72848132 + MGP_C3HHeJ_P0040870 Ptp4a3 protein_coding protein_coding MGP_C3HHeJ_T0040871.1 MGP_C3HHeJ_G0021663.1 mouse_genomes_project 15 72811405 72848132 + MGP_C3HHeJ_P0040871 Ptp4a3 protein_coding protein_coding MGP_C3HHeJ_T0040872.1 MGP_C3HHeJ_G0021663.1 mouse_genomes_project 15 72813188 72848132 + MGP_C3HHeJ_P0040872 Ptp4a3 protein_coding protein_coding MGP_C3HHeJ_T0040873.1 MGP_C3HHeJ_G0021663.1 mouse_genomes_project 15 72837391 72848132 + MGP_C3HHeJ_P0040873 Ptp4a3 protein_coding protein_coding MGP_C3HHeJ_T0003531.1 MGP_C3HHeJ_G0003203.1 mouse_genomes_project 15 56277470 56279574 - 9330154K18Rik antisense antisense MGP_C3HHeJ_T0042059.1 MGP_C3HHeJ_G0022008.1 mouse_genomes_project 15 97637728 97702883 - MGP_C3HHeJ_P0042059 Slc38a4 protein_coding protein_coding MGP_C3HHeJ_T0042060.1 MGP_C3HHeJ_G0022008.1 mouse_genomes_project 15 97639670 97666005 - MGP_C3HHeJ_P0042060 Slc38a4 protein_coding protein_coding MGP_C3HHeJ_T0041929.1 MGP_C3HHeJ_G0021968.1 mouse_genomes_project 15 89692904 89715664 - MGP_C3HHeJ_P0041929 Syce3 protein_coding protein_coding MGP_C3HHeJ_T0041930.1 MGP_C3HHeJ_G0021968.1 mouse_genomes_project 15 89692904 89715904 - MGP_C3HHeJ_P0041930 Syce3 protein_coding protein_coding MGP_C3HHeJ_T0041803.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85962067 85975043 + MGP_C3HHeJ_P0041803 Trmu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041804.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85962075 85979803 + MGP_C3HHeJ_P0041804 Trmu protein_coding protein_coding MGP_C3HHeJ_T0041805.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85962136 85965602 + MGP_C3HHeJ_P0041805 Trmu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041806.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85962169 85976399 + Trmu protein_coding retained_intron MGP_C3HHeJ_T0041807.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85967922 85978837 + MGP_C3HHeJ_P0041807 Trmu protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041808.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85975021 85976916 + Trmu protein_coding retained_intron MGP_C3HHeJ_T0041809.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85976646 85979803 + Trmu protein_coding processed_transcript MGP_C3HHeJ_T0041810.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85977190 85979470 + Trmu protein_coding retained_intron MGP_C3HHeJ_T0041811.1 MGP_C3HHeJ_G0021934.1 mouse_genomes_project 15 85977320 85979805 + Trmu protein_coding retained_intron MGP_C3HHeJ_T0006726.1 MGP_C3HHeJ_G0005539.1 mouse_genomes_project 15 101644388 101645359 - C330013E15Rik lincRNA lincRNA MGP_C3HHeJ_T0003533.1 MGP_C3HHeJ_G0003205.1 mouse_genomes_project 15 65163173 65166508 + Gm27242 antisense antisense MGP_C3HHeJ_T0042542.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104500870 104508104 - MGP_C3HHeJ_P0042542 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042543.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104500875 104504193 - MGP_C3HHeJ_P0042543 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042544.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104500875 104504142 - MGP_C3HHeJ_P0042544 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042545.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104500878 104504353 - MGP_C3HHeJ_P0042545 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042546.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104500933 104504192 - MGP_C3HHeJ_P0042546 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042547.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104501611 104505829 - MGP_C3HHeJ_P0042547 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042548.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104501663 104506727 - MGP_C3HHeJ_P0042548 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042549.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104501725 104504364 - MGP_C3HHeJ_P0042549 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042550.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104501895 104505487 - MGP_C3HHeJ_P0042550 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0042551.1 MGP_C3HHeJ_G0022169.1 mouse_genomes_project 15 104502005 104511064 - MGP_C3HHeJ_P0042551 Nfe2 protein_coding protein_coding MGP_C3HHeJ_T0040477.1 MGP_C3HHeJ_G0021527.1 mouse_genomes_project 15 32791352 33084022 - MGP_C3HHeJ_P0040477 Stk3 protein_coding protein_coding MGP_C3HHeJ_T0040478.1 MGP_C3HHeJ_G0021527.1 mouse_genomes_project 15 32791529 33083966 - MGP_C3HHeJ_P0040478 Stk3 protein_coding protein_coding MGP_C3HHeJ_T0040479.1 MGP_C3HHeJ_G0021527.1 mouse_genomes_project 15 32872408 32920066 - Stk3 protein_coding retained_intron MGP_C3HHeJ_T0040480.1 MGP_C3HHeJ_G0021527.1 mouse_genomes_project 15 33005258 33083885 - MGP_C3HHeJ_P0040480 Stk3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003565.1 MGP_C3HHeJ_G0003230.1 mouse_genomes_project 15 100835413 100837399 + Gm21917 antisense antisense MGP_C3HHeJ_T0003566.1 MGP_C3HHeJ_G0003230.1 mouse_genomes_project 15 100835413 100856816 + Gm21917 antisense antisense MGP_C3HHeJ_T0003567.1 MGP_C3HHeJ_G0003230.1 mouse_genomes_project 15 100838515 100857281 + Gm21917 antisense antisense MGP_C3HHeJ_T0041062.1 MGP_C3HHeJ_G0021719.1 mouse_genomes_project 15 75595415 75621761 + MGP_C3HHeJ_P0041062 Spatc1 protein_coding protein_coding MGP_C3HHeJ_T0040880.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73626810 73705335 + MGP_C3HHeJ_P0040880 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040881.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73627091 73705335 + MGP_C3HHeJ_P0040881 Adgrb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040882.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73627484 73705335 + MGP_C3HHeJ_P0040882 Adgrb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040883.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73651046 73654169 + MGP_C3HHeJ_P0040883 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040884.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73673655 73689020 + MGP_C3HHeJ_P0040884 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040885.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73675749 73687108 + MGP_C3HHeJ_P0040885 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040886.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73677352 73705335 + MGP_C3HHeJ_P0040886 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040887.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73677373 73705314 + MGP_C3HHeJ_P0040887 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040888.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73677421 73687762 + MGP_C3HHeJ_P0040888 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0040889.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73685855 73705336 + Adgrb1 protein_coding processed_transcript MGP_C3HHeJ_T0040890.1 MGP_C3HHeJ_G0021666.1 mouse_genomes_project 15 73689043 73705336 + MGP_C3HHeJ_P0040890 Adgrb1 protein_coding protein_coding MGP_C3HHeJ_T0003571.1 MGP_C3HHeJ_G0003234.1 mouse_genomes_project 15 101735966 101745091 + Galnt6os antisense antisense MGP_C3HHeJ_T0041271.1 MGP_C3HHeJ_G0021773.1 mouse_genomes_project 15 77548126 77559953 - MGP_C3HHeJ_P0041271 Eif3d protein_coding protein_coding MGP_C3HHeJ_T0041246.1 MGP_C3HHeJ_G0021765.1 mouse_genomes_project 15 77157773 77164950 + MGP_C3HHeJ_P0041246 Apol7c protein_coding protein_coding MGP_C3HHeJ_T0040729.1 MGP_C3HHeJ_G0021625.1 mouse_genomes_project 15 57998862 58168190 + MGP_C3HHeJ_P0040729 Nsmce2 protein_coding protein_coding MGP_C3HHeJ_T0040730.1 MGP_C3HHeJ_G0021625.1 mouse_genomes_project 15 57998862 58231242 + MGP_C3HHeJ_P0040730 Nsmce2 protein_coding protein_coding MGP_C3HHeJ_T0040424.1 MGP_C3HHeJ_G0021507.1 mouse_genomes_project 15 29234024 29248809 - MGP_C3HHeJ_P0040424 Ropn1l protein_coding protein_coding MGP_C3HHeJ_T0042359.1 MGP_C3HHeJ_G0022099.1 mouse_genomes_project 15 102116389 102120593 - MGP_C3HHeJ_P0042359 Fignl2 protein_coding protein_coding MGP_C3HHeJ_T0041860.1 MGP_C3HHeJ_G0021951.1 mouse_genomes_project 15 89364715 89373811 + MGP_C3HHeJ_P0041860 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041861.1 MGP_C3HHeJ_G0021951.1 mouse_genomes_project 15 89364715 89375971 + MGP_C3HHeJ_P0041861 protein_coding protein_coding MGP_C3HHeJ_T0098968.1 MGP_C3HHeJ_G0037162.1 mouse_genomes_project 15 1941269 1941372 + Gm25652 snRNA snRNA MGP_C3HHeJ_T0041684.1 MGP_C3HHeJ_G0021893.1 mouse_genomes_project 15 83035382 83046305 - MGP_C3HHeJ_P0041684 Rrp7a protein_coding protein_coding MGP_C3HHeJ_T0041686.1 MGP_C3HHeJ_G0021893.1 mouse_genomes_project 15 83037797 83041189 - MGP_C3HHeJ_P0041686 Rrp7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041687.1 MGP_C3HHeJ_G0021893.1 mouse_genomes_project 15 83040798 83041919 - Rrp7a protein_coding retained_intron MGP_C3HHeJ_T0041688.1 MGP_C3HHeJ_G0021893.1 mouse_genomes_project 15 83042829 83045736 - MGP_C3HHeJ_P0041688 Rrp7a protein_coding protein_coding MGP_C3HHeJ_T0041689.1 MGP_C3HHeJ_G0021893.1 mouse_genomes_project 15 83042855 83046255 - MGP_C3HHeJ_P0041689 Rrp7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041712.1 MGP_C3HHeJ_G0021903.1 mouse_genomes_project 15 83522189 83543129 - MGP_C3HHeJ_P0041712 Ttll12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041713.1 MGP_C3HHeJ_G0021903.1 mouse_genomes_project 15 83522714 83543129 - MGP_C3HHeJ_P0041713 Ttll12 protein_coding protein_coding MGP_C3HHeJ_T0041714.1 MGP_C3HHeJ_G0021903.1 mouse_genomes_project 15 83528837 83533963 - Ttll12 protein_coding retained_intron MGP_C3HHeJ_T0042043.1 MGP_C3HHeJ_G0021999.1 mouse_genomes_project 15 96205605 96239713 - MGP_C3HHeJ_P0042043 Dbx2 protein_coding protein_coding MGP_C3HHeJ_T0040794.1 MGP_C3HHeJ_G0021641.1 mouse_genomes_project 15 64802579 64855368 - MGP_C3HHeJ_P0040794 Hhla1 protein_coding protein_coding MGP_C3HHeJ_T0009945.1 MGP_C3HHeJ_G0008078.1 mouse_genomes_project 15 19444187 19444356 - Gm44373 miRNA miRNA MGP_C3HHeJ_T0003541.1 MGP_C3HHeJ_G0003212.1 mouse_genomes_project 15 78542630 78544336 - 1700027A07Rik antisense antisense MGP_C3HHeJ_T0041973.1 MGP_C3HHeJ_G0021979.1 mouse_genomes_project 15 90845847 91035074 - MGP_C3HHeJ_P0041973 Cpne8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041974.1 MGP_C3HHeJ_G0021979.1 mouse_genomes_project 15 90845848 91035135 - MGP_C3HHeJ_P0041974 Cpne8 protein_coding protein_coding MGP_C3HHeJ_T0041975.1 MGP_C3HHeJ_G0021979.1 mouse_genomes_project 15 91002999 91035079 - Cpne8 protein_coding retained_intron MGP_C3HHeJ_T0040710.1 MGP_C3HHeJ_G0021612.1 mouse_genomes_project 15 56880803 56890890 - MGP_C3HHeJ_P0040710 Klhl38 protein_coding protein_coding MGP_C3HHeJ_T0003561.1 MGP_C3HHeJ_G0003226.1 mouse_genomes_project 15 100296537 100304032 + Nckap5los antisense antisense MGP_C3HHeJ_T0017239.1 MGP_C3HHeJ_G0015059.1 mouse_genomes_project 15 64728117 64728605 + Gm20405 processed_transcript processed_transcript MGP_C3HHeJ_T0041299.1 MGP_C3HHeJ_G0021783.1 mouse_genomes_project 15 78085048 78099560 - MGP_C3HHeJ_P0041299 Il2rb protein_coding protein_coding MGP_C3HHeJ_T0041300.1 MGP_C3HHeJ_G0021783.1 mouse_genomes_project 15 78085820 78098252 - MGP_C3HHeJ_P0041300 Il2rb protein_coding protein_coding MGP_C3HHeJ_T0041543.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138610 81201323 + MGP_C3HHeJ_P0041543 Xpnpep3 protein_coding protein_coding MGP_C3HHeJ_T0041544.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138622 81168506 + Xpnpep3 protein_coding retained_intron MGP_C3HHeJ_T0041545.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138642 81154784 + Xpnpep3 protein_coding retained_intron MGP_C3HHeJ_T0041546.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138668 81197547 + MGP_C3HHeJ_P0041546 Xpnpep3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041547.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138669 81182147 + MGP_C3HHeJ_P0041547 Xpnpep3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041548.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138696 81197547 + MGP_C3HHeJ_P0041548 Xpnpep3 protein_coding protein_coding MGP_C3HHeJ_T0041549.1 MGP_C3HHeJ_G0021849.1 mouse_genomes_project 15 81138705 81168090 + Xpnpep3 protein_coding processed_transcript MGP_C3HHeJ_T0042499.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103715569 103821130 - MGP_C3HHeJ_P0042499 protein_coding protein_coding MGP_C3HHeJ_T0042500.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103718202 103718592 - MGP_C3HHeJ_P0042500 protein_coding protein_coding MGP_C3HHeJ_T0042501.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103718202 103821507 - MGP_C3HHeJ_P0042501 protein_coding protein_coding MGP_C3HHeJ_T0042502.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103723138 103821496 - MGP_C3HHeJ_P0042502 protein_coding protein_coding MGP_C3HHeJ_T0042503.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103726213 103821510 - MGP_C3HHeJ_P0042503 protein_coding protein_coding MGP_C3HHeJ_T0042504.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103726893 103821145 - MGP_C3HHeJ_P0042504 protein_coding protein_coding MGP_C3HHeJ_T0042505.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103735286 103821495 - protein_coding retained_intron MGP_C3HHeJ_T0042506.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103737350 103821521 - MGP_C3HHeJ_P0042506 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042507.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103737402 103820979 - MGP_C3HHeJ_P0042507 protein_coding protein_coding MGP_C3HHeJ_T0042508.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103740837 103821124 - MGP_C3HHeJ_P0042508 protein_coding protein_coding MGP_C3HHeJ_T0042509.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103740837 103821503 - MGP_C3HHeJ_P0042509 protein_coding protein_coding MGP_C3HHeJ_T0042510.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103751970 103821127 - protein_coding retained_intron MGP_C3HHeJ_T0042511.1 MGP_C3HHeJ_G0022154.1 mouse_genomes_project 15 103790164 103821521 - protein_coding retained_intron MGP_C3HHeJ_T0012925.1 MGP_C3HHeJ_G0011029.1 mouse_genomes_project 15 20468226 20469981 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042009.1 MGP_C3HHeJ_G0021989.1 mouse_genomes_project 15 93758680 93813680 - MGP_C3HHeJ_P0042009 Yaf2 protein_coding protein_coding MGP_C3HHeJ_T0042010.1 MGP_C3HHeJ_G0021989.1 mouse_genomes_project 15 93758683 93813807 - Yaf2 protein_coding processed_transcript MGP_C3HHeJ_T0042100.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98679175 98708299 - MGP_C3HHeJ_P0042100 Col2a1 protein_coding protein_coding MGP_C3HHeJ_T0042101.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98679175 98708261 - MGP_C3HHeJ_P0042101 Col2a1 protein_coding protein_coding MGP_C3HHeJ_T0042102.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98689878 98692490 - Col2a1 protein_coding retained_intron MGP_C3HHeJ_T0042103.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98691680 98694037 - Col2a1 protein_coding processed_transcript MGP_C3HHeJ_T0042104.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98698463 98703079 - Col2a1 protein_coding retained_intron MGP_C3HHeJ_T0042105.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98698614 98703308 - Col2a1 protein_coding processed_transcript MGP_C3HHeJ_T0042106.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98701965 98705501 - Col2a1 protein_coding processed_transcript MGP_C3HHeJ_T0042107.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98702172 98708239 - MGP_C3HHeJ_P0042107 Col2a1 protein_coding protein_coding MGP_C3HHeJ_T0042108.1 MGP_C3HHeJ_G0022018.1 mouse_genomes_project 15 98703857 98708261 - Col2a1 protein_coding retained_intron MGP_C3HHeJ_T0042057.1 MGP_C3HHeJ_G0022006.1 mouse_genomes_project 15 97319043 97331332 - MGP_C3HHeJ_P0042057 Slc38a2 protein_coding protein_coding MGP_C3HHeJ_T0040207.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3526274 3630063 + MGP_C3HHeJ_P0040207 Fyb protein_coding protein_coding MGP_C3HHeJ_T0040208.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3540406 3582391 + Fyb protein_coding retained_intron MGP_C3HHeJ_T0040209.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3545562 3598161 + MGP_C3HHeJ_P0040209 Fyb protein_coding protein_coding MGP_C3HHeJ_T0040210.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3581376 3595749 + Fyb protein_coding retained_intron MGP_C3HHeJ_T0040211.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3607500 3627625 + MGP_C3HHeJ_P0040211 Fyb protein_coding protein_coding MGP_C3HHeJ_T0040212.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3611541 3617341 + Fyb protein_coding retained_intron MGP_C3HHeJ_T0040213.1 MGP_C3HHeJ_G0021441.1 mouse_genomes_project 15 3627153 3630000 + Fyb protein_coding retained_intron MGP_C3HHeJ_T0012936.1 MGP_C3HHeJ_G0011040.1 mouse_genomes_project 15 43097019 43097354 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003524.1 MGP_C3HHeJ_G0003198.1 mouse_genomes_project 15 35258128 35259367 - Gm16136 antisense antisense MGP_C3HHeJ_T0003525.1 MGP_C3HHeJ_G0003198.1 mouse_genomes_project 15 35258146 35259517 - Gm16136 antisense antisense MGP_C3HHeJ_T0003526.1 MGP_C3HHeJ_G0003198.1 mouse_genomes_project 15 35258862 35259349 - Gm16136 antisense antisense MGP_C3HHeJ_T0009975.1 MGP_C3HHeJ_G0008108.1 mouse_genomes_project 15 79137028 79137109 + Gm44302 miRNA miRNA MGP_C3HHeJ_T0012926.1 MGP_C3HHeJ_G0011030.1 mouse_genomes_project 15 23325810 23326138 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040465.1 MGP_C3HHeJ_G0021523.1 mouse_genomes_project 15 32381261 32392447 - MGP_C3HHeJ_P0040465 Rida protein_coding protein_coding MGP_C3HHeJ_T0040466.1 MGP_C3HHeJ_G0021523.1 mouse_genomes_project 15 32381264 32386997 - Rida protein_coding retained_intron MGP_C3HHeJ_T0040467.1 MGP_C3HHeJ_G0021523.1 mouse_genomes_project 15 32382134 32392363 - Rida protein_coding retained_intron MGP_C3HHeJ_T0040468.1 MGP_C3HHeJ_G0021523.1 mouse_genomes_project 15 32382844 32386883 - Rida protein_coding processed_transcript MGP_C3HHeJ_T0041238.1 MGP_C3HHeJ_G0021761.1 mouse_genomes_project 15 76761645 76770857 - MGP_C3HHeJ_P0041238 Apol7a protein_coding protein_coding MGP_C3HHeJ_T0041239.1 MGP_C3HHeJ_G0021761.1 mouse_genomes_project 15 76761646 76770668 - MGP_C3HHeJ_P0041239 Apol7a protein_coding protein_coding MGP_C3HHeJ_T0041240.1 MGP_C3HHeJ_G0021761.1 mouse_genomes_project 15 76762381 76770809 - MGP_C3HHeJ_P0041240 Apol7a protein_coding protein_coding MGP_C3HHeJ_T0041241.1 MGP_C3HHeJ_G0021761.1 mouse_genomes_project 15 76766687 76772682 - MGP_C3HHeJ_P0041241 Apol7a protein_coding protein_coding MGP_C3HHeJ_T0041242.1 MGP_C3HHeJ_G0021761.1 mouse_genomes_project 15 76766757 76771285 - Apol7a protein_coding retained_intron MGP_C3HHeJ_T0041244.1 MGP_C3HHeJ_G0021763.1 mouse_genomes_project 15 76818256 76820173 - MGP_C3HHeJ_P0041244 protein_coding protein_coding MGP_C3HHeJ_T0041639.1 MGP_C3HHeJ_G0021875.1 mouse_genomes_project 15 82033547 82046456 - MGP_C3HHeJ_P0041639 Cenpm protein_coding protein_coding MGP_C3HHeJ_T0041640.1 MGP_C3HHeJ_G0021875.1 mouse_genomes_project 15 82033547 82046456 - MGP_C3HHeJ_P0041640 Cenpm protein_coding protein_coding MGP_C3HHeJ_T0041179.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76010723 76033977 + protein_coding processed_transcript MGP_C3HHeJ_T0041180.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76010744 76037836 + MGP_C3HHeJ_P0041180 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041181.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76032348 76033524 + protein_coding processed_transcript MGP_C3HHeJ_T0041182.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76033574 76038083 + protein_coding retained_intron MGP_C3HHeJ_T0041183.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76033696 76038079 + MGP_C3HHeJ_P0041183 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041184.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76034600 76036513 + protein_coding retained_intron MGP_C3HHeJ_T0041185.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76034615 76036677 + MGP_C3HHeJ_P0041185 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041186.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76034858 76035657 + protein_coding retained_intron MGP_C3HHeJ_T0041187.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76035971 76038083 + protein_coding retained_intron MGP_C3HHeJ_T0041188.1 MGP_C3HHeJ_G0021745.1 mouse_genomes_project 15 76036080 76038083 + protein_coding retained_intron MGP_C3HHeJ_T0041823.1 MGP_C3HHeJ_G0021939.1 mouse_genomes_project 15 87799392 87937663 + MGP_C3HHeJ_P0041823 Fam19a5 protein_coding protein_coding MGP_C3HHeJ_T0000908.1 MGP_C3HHeJ_G0000848.1 mouse_genomes_project 15 60684402 60688469 - TEC TEC MGP_C3HHeJ_T0040326.1 MGP_C3HHeJ_G0021476.1 mouse_genomes_project 15 9100846 9115566 - MGP_C3HHeJ_P0040326 Sub1 protein_coding protein_coding MGP_C3HHeJ_T0040327.1 MGP_C3HHeJ_G0021476.1 mouse_genomes_project 15 9103548 9116491 - MGP_C3HHeJ_P0040327 Sub1 protein_coding protein_coding MGP_C3HHeJ_T0040328.1 MGP_C3HHeJ_G0021476.1 mouse_genomes_project 15 9105641 9115520 - Sub1 protein_coding retained_intron MGP_C3HHeJ_T0040329.1 MGP_C3HHeJ_G0021476.1 mouse_genomes_project 15 9105961 9115258 - Sub1 protein_coding processed_transcript MGP_C3HHeJ_T0098371.1 MGP_C3HHeJ_G0036579.1 mouse_genomes_project 15 71843828 71848542 - Peg13 sense_intronic sense_intronic MGP_C3HHeJ_T0041960.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89905699 89915083 - MGP_C3HHeJ_P0041960 Rabl2 protein_coding protein_coding MGP_C3HHeJ_T0041961.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89905703 89915025 - Rabl2 protein_coding retained_intron MGP_C3HHeJ_T0041962.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89905703 89915024 - MGP_C3HHeJ_P0041962 Rabl2 protein_coding protein_coding MGP_C3HHeJ_T0041963.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89906207 89913559 - MGP_C3HHeJ_P0041963 Rabl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041964.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89906479 89907709 - Rabl2 protein_coding retained_intron MGP_C3HHeJ_T0041965.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89906521 89915050 - MGP_C3HHeJ_P0041965 Rabl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041966.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89906549 89914999 - MGP_C3HHeJ_P0041966 Rabl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041967.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89906564 89907484 - MGP_C3HHeJ_P0041967 Rabl2 protein_coding protein_coding MGP_C3HHeJ_T0041968.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89906810 89915046 - MGP_C3HHeJ_P0041968 Rabl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041969.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89909391 89915065 - Rabl2 protein_coding retained_intron MGP_C3HHeJ_T0041970.1 MGP_C3HHeJ_G0021976.1 mouse_genomes_project 15 89911052 89915036 - Rabl2 protein_coding processed_transcript MGP_C3HHeJ_T0041981.1 MGP_C3HHeJ_G0021981.1 mouse_genomes_project 15 91494477 91540160 - MGP_C3HHeJ_P0041981 Abcd2 protein_coding protein_coding MGP_C3HHeJ_T0041276.1 MGP_C3HHeJ_G0021777.1 mouse_genomes_project 15 77831930 77849179 + MGP_C3HHeJ_P0041276 Ncf4 protein_coding protein_coding MGP_C3HHeJ_T0041277.1 MGP_C3HHeJ_G0021777.1 mouse_genomes_project 15 77831973 77847587 + MGP_C3HHeJ_P0041277 Ncf4 protein_coding protein_coding MGP_C3HHeJ_T0041278.1 MGP_C3HHeJ_G0021777.1 mouse_genomes_project 15 77840149 77843148 + Ncf4 protein_coding retained_intron MGP_C3HHeJ_T0041279.1 MGP_C3HHeJ_G0021777.1 mouse_genomes_project 15 77840363 77847362 + Ncf4 protein_coding processed_transcript MGP_C3HHeJ_T0041280.1 MGP_C3HHeJ_G0021777.1 mouse_genomes_project 15 77842569 77847395 + Ncf4 protein_coding retained_intron MGP_C3HHeJ_T0041281.1 MGP_C3HHeJ_G0021777.1 mouse_genomes_project 15 77847470 77849174 + Ncf4 protein_coding retained_intron MGP_C3HHeJ_T0040916.1 MGP_C3HHeJ_G0021680.1 mouse_genomes_project 15 73946908 73968466 + MGP_C3HHeJ_P0040916 protein_coding protein_coding MGP_C3HHeJ_T0040917.1 MGP_C3HHeJ_G0021680.1 mouse_genomes_project 15 73946924 73955192 + MGP_C3HHeJ_P0040917 protein_coding protein_coding MGP_C3HHeJ_T0040918.1 MGP_C3HHeJ_G0021680.1 mouse_genomes_project 15 73949441 73955192 + protein_coding processed_transcript MGP_C3HHeJ_T0040919.1 MGP_C3HHeJ_G0021680.1 mouse_genomes_project 15 73949441 73955192 + protein_coding processed_transcript MGP_C3HHeJ_T0011304.1 MGP_C3HHeJ_G0009437.1 mouse_genomes_project 15 104169973 104170042 + Gm27337 misc_RNA misc_RNA MGP_C3HHeJ_T0042129.1 MGP_C3HHeJ_G0022027.1 mouse_genomes_project 15 99093504 99094422 - MGP_C3HHeJ_P0042129 Olfr284 protein_coding protein_coding MGP_C3HHeJ_T0042130.1 MGP_C3HHeJ_G0022027.1 mouse_genomes_project 15 99093504 99094470 - MGP_C3HHeJ_P0042130 Olfr284 protein_coding protein_coding MGP_C3HHeJ_T0041190.1 MGP_C3HHeJ_G0021747.1 mouse_genomes_project 15 76044711 76047409 + MGP_C3HHeJ_P0041190 Mfsd3 protein_coding protein_coding MGP_C3HHeJ_T0100237.1 MGP_C3HHeJ_G0038431.1 mouse_genomes_project 15 18356217 18356345 + Gm25711 snoRNA snoRNA MGP_C3HHeJ_T0009994.1 MGP_C3HHeJ_G0008127.1 mouse_genomes_project 15 84139859 84139967 + Mir6392 miRNA miRNA MGP_C3HHeJ_T0040402.1 MGP_C3HHeJ_G0021496.1 mouse_genomes_project 15 23974888 23978212 + March11 protein_coding retained_intron MGP_C3HHeJ_T0040403.1 MGP_C3HHeJ_G0021496.1 mouse_genomes_project 15 23975102 24082025 + MGP_C3HHeJ_P0040403 March11 protein_coding protein_coding MGP_C3HHeJ_T0040404.1 MGP_C3HHeJ_G0021496.1 mouse_genomes_project 15 24058911 24082182 + March11 protein_coding retained_intron MGP_C3HHeJ_T0041178.1 MGP_C3HHeJ_G0021744.1 mouse_genomes_project 15 76007352 76009017 - MGP_C3HHeJ_P0041178 Foxh1 protein_coding protein_coding MGP_C3HHeJ_T0040215.1 MGP_C3HHeJ_G0021443.1 mouse_genomes_project 15 3770111 3837595 - MGP_C3HHeJ_P0040215 Osmr protein_coding protein_coding MGP_C3HHeJ_T0040216.1 MGP_C3HHeJ_G0021443.1 mouse_genomes_project 15 3771571 3837595 - MGP_C3HHeJ_P0040216 Osmr protein_coding protein_coding MGP_C3HHeJ_T0040217.1 MGP_C3HHeJ_G0021443.1 mouse_genomes_project 15 3777114 3781015 - Osmr protein_coding retained_intron MGP_C3HHeJ_T0040218.1 MGP_C3HHeJ_G0021443.1 mouse_genomes_project 15 3797940 3836894 - Osmr protein_coding retained_intron MGP_C3HHeJ_T0040219.1 MGP_C3HHeJ_G0021443.1 mouse_genomes_project 15 3806509 3836883 - Osmr protein_coding retained_intron MGP_C3HHeJ_T0040220.1 MGP_C3HHeJ_G0021443.1 mouse_genomes_project 15 3817520 3836922 - Osmr protein_coding retained_intron MGP_C3HHeJ_T0042294.1 MGP_C3HHeJ_G0022084.1 mouse_genomes_project 15 101295322 101303256 + MGP_C3HHeJ_P0042294 protein_coding protein_coding MGP_C3HHeJ_T0012953.1 MGP_C3HHeJ_G0011057.1 mouse_genomes_project 15 76142933 76143288 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042525.1 MGP_C3HHeJ_G0022162.1 mouse_genomes_project 15 104200993 104206225 + MGP_C3HHeJ_P0042525 Hoxc9 protein_coding protein_coding MGP_C3HHeJ_T0042526.1 MGP_C3HHeJ_G0022162.1 mouse_genomes_project 15 104201586 104209563 + MGP_C3HHeJ_P0042526 Hoxc9 protein_coding protein_coding MGP_C3HHeJ_T0040345.1 MGP_C3HHeJ_G0021480.1 mouse_genomes_project 15 9461540 9492533 + MGP_C3HHeJ_P0040345 Golph3 protein_coding protein_coding MGP_C3HHeJ_T0040756.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62946926 63184170 - MGP_C3HHeJ_P0040756 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040757.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948606 63184136 - MGP_C3HHeJ_P0040757 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040758.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948609 63261290 - MGP_C3HHeJ_P0040758 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040759.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948611 63261290 - MGP_C3HHeJ_P0040759 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040760.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948611 63261127 - MGP_C3HHeJ_P0040760 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040761.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948611 63261290 - MGP_C3HHeJ_P0040761 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040762.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948611 63223417 - MGP_C3HHeJ_P0040762 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040763.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948611 63261290 - MGP_C3HHeJ_P0040763 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040764.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62948689 63261108 - MGP_C3HHeJ_P0040764 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040765.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62949517 63223417 - MGP_C3HHeJ_P0040765 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040766.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62949517 63223417 - MGP_C3HHeJ_P0040766 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040767.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62957205 62965539 - Asap1 protein_coding retained_intron MGP_C3HHeJ_T0040768.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62983967 62986700 - Asap1 protein_coding processed_transcript MGP_C3HHeJ_T0040769.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 62984020 62987736 - Asap1 protein_coding retained_intron MGP_C3HHeJ_T0040770.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 63023600 63078803 - MGP_C3HHeJ_P0040770 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040771.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 63043548 63261103 - Asap1 protein_coding processed_transcript MGP_C3HHeJ_T0040772.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 63061371 63184170 - Asap1 protein_coding retained_intron MGP_C3HHeJ_T0040773.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 63061865 63183186 - Asap1 protein_coding processed_transcript MGP_C3HHeJ_T0040774.1 MGP_C3HHeJ_G0021636.1 mouse_genomes_project 15 63078808 63186647 - MGP_C3HHeJ_P0040774 Asap1 protein_coding protein_coding MGP_C3HHeJ_T0040557.1 MGP_C3HHeJ_G0021552.1 mouse_genomes_project 15 36979849 37012374 + MGP_C3HHeJ_P0040557 Fzd6 protein_coding protein_coding MGP_C3HHeJ_T0040558.1 MGP_C3HHeJ_G0021552.1 mouse_genomes_project 15 36979902 37012374 + MGP_C3HHeJ_P0040558 Fzd6 protein_coding protein_coding MGP_C3HHeJ_T0040475.1 MGP_C3HHeJ_G0021525.1 mouse_genomes_project 15 32474152 32589572 - MGP_C3HHeJ_P0040475 Nipal2 protein_coding protein_coding MGP_C3HHeJ_T0041552.1 MGP_C3HHeJ_G0021852.1 mouse_genomes_project 15 81245621 81246055 - MGP_C3HHeJ_P0041552 Gm5218 protein_coding protein_coding MGP_C3HHeJ_T0041398.1 MGP_C3HHeJ_G0021810.1 mouse_genomes_project 15 79006076 79018008 + MGP_C3HHeJ_P0041398 Maff protein_coding protein_coding MGP_C3HHeJ_T0041399.1 MGP_C3HHeJ_G0021810.1 mouse_genomes_project 15 79006596 79018008 + MGP_C3HHeJ_P0041399 Maff protein_coding protein_coding MGP_C3HHeJ_T0041778.1 MGP_C3HHeJ_G0021924.1 mouse_genomes_project 15 85161170 85174342 + MGP_C3HHeJ_P0041778 Ribc2 protein_coding protein_coding MGP_C3HHeJ_T0040789.1 MGP_C3HHeJ_G0021640.1 mouse_genomes_project 15 64746691 64785429 - MGP_C3HHeJ_P0040789 Oc90 protein_coding protein_coding MGP_C3HHeJ_T0040790.1 MGP_C3HHeJ_G0021640.1 mouse_genomes_project 15 64746691 64785572 - MGP_C3HHeJ_P0040790 Oc90 protein_coding protein_coding MGP_C3HHeJ_T0040791.1 MGP_C3HHeJ_G0021640.1 mouse_genomes_project 15 64746691 64770921 - MGP_C3HHeJ_P0040791 Oc90 protein_coding protein_coding MGP_C3HHeJ_T0040792.1 MGP_C3HHeJ_G0021640.1 mouse_genomes_project 15 64747030 64761314 - MGP_C3HHeJ_P0040792 Oc90 protein_coding protein_coding MGP_C3HHeJ_T0040793.1 MGP_C3HHeJ_G0021640.1 mouse_genomes_project 15 64747158 64758490 - MGP_C3HHeJ_P0040793 Oc90 protein_coding protein_coding MGP_C3HHeJ_T0042202.1 MGP_C3HHeJ_G0022058.1 mouse_genomes_project 15 100102564 100112982 - MGP_C3HHeJ_P0042202 Mcrs1 protein_coding protein_coding MGP_C3HHeJ_T0042126.1 MGP_C3HHeJ_G0022025.1 mouse_genomes_project 15 98971925 98973251 - MGP_C3HHeJ_P0042126 H1fnt protein_coding protein_coding MGP_C3HHeJ_T0099002.1 MGP_C3HHeJ_G0037196.1 mouse_genomes_project 15 77437579 77437679 - Gm22107 snRNA snRNA MGP_C3HHeJ_T0101754.1 MGP_C3HHeJ_G0039719.1 mouse_genomes_project 15 74434121 74439505 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0041273.1 MGP_C3HHeJ_G0021775.1 mouse_genomes_project 15 77746464 77761097 - MGP_C3HHeJ_P0041273 Ift27 protein_coding protein_coding MGP_C3HHeJ_T0006678.1 MGP_C3HHeJ_G0005512.1 mouse_genomes_project 15 42910511 42922311 + lincRNA lincRNA MGP_C3HHeJ_T0041298.1 MGP_C3HHeJ_G0021782.1 mouse_genomes_project 15 78044190 78073307 - MGP_C3HHeJ_P0041298 Tmprss6 protein_coding protein_coding MGP_C3HHeJ_T0012972.1 MGP_C3HHeJ_G0011076.1 mouse_genomes_project 15 104855116 104856544 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040496.1 MGP_C3HHeJ_G0021534.1 mouse_genomes_project 15 34150560 34209527 + MGP_C3HHeJ_P0040496 Spag1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100266.1 MGP_C3HHeJ_G0038460.1 mouse_genomes_project 15 70797717 70797895 + Gm22519 snoRNA snoRNA MGP_C3HHeJ_T0040647.1 MGP_C3HHeJ_G0021593.1 mouse_genomes_project 15 53558839 53573226 - MGP_C3HHeJ_P0040647 Dscc1 protein_coding protein_coding MGP_C3HHeJ_T0040648.1 MGP_C3HHeJ_G0021593.1 mouse_genomes_project 15 53558842 53573215 - MGP_C3HHeJ_P0040648 Dscc1 protein_coding protein_coding MGP_C3HHeJ_T0040649.1 MGP_C3HHeJ_G0021593.1 mouse_genomes_project 15 53566459 53570498 - Dscc1 protein_coding retained_intron MGP_C3HHeJ_T0041004.1 MGP_C3HHeJ_G0021707.1 mouse_genomes_project 15 75289706 75297063 + Zfp707 protein_coding retained_intron MGP_C3HHeJ_T0041005.1 MGP_C3HHeJ_G0021707.1 mouse_genomes_project 15 75289845 75296470 + MGP_C3HHeJ_P0041005 Zfp707 protein_coding protein_coding MGP_C3HHeJ_T0041006.1 MGP_C3HHeJ_G0021707.1 mouse_genomes_project 15 75289855 75296939 + MGP_C3HHeJ_P0041006 Zfp707 protein_coding protein_coding MGP_C3HHeJ_T0041007.1 MGP_C3HHeJ_G0021707.1 mouse_genomes_project 15 75290224 75295960 + MGP_C3HHeJ_P0041007 Zfp707 protein_coding protein_coding MGP_C3HHeJ_T0041008.1 MGP_C3HHeJ_G0021707.1 mouse_genomes_project 15 75293977 75295145 + Zfp707 protein_coding retained_intron MGP_C3HHeJ_T0100250.1 MGP_C3HHeJ_G0038444.1 mouse_genomes_project 15 36119011 36119145 + Gm22353 snoRNA snoRNA MGP_C3HHeJ_T0009971.1 MGP_C3HHeJ_G0008104.1 mouse_genomes_project 15 77954111 77954173 + Mir7676-2 miRNA miRNA MGP_C3HHeJ_T0017238.1 MGP_C3HHeJ_G0015058.1 mouse_genomes_project 15 62961306 62963892 + Gm20717 processed_transcript processed_transcript MGP_C3HHeJ_T0040411.1 MGP_C3HHeJ_G0021501.1 mouse_genomes_project 15 25451093 25750803 - MGP_C3HHeJ_P0040411 Trio protein_coding protein_coding MGP_C3HHeJ_T0101753.1 MGP_C3HHeJ_G0039718.1 mouse_genomes_project 15 74127016 74130341 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003540.1 MGP_C3HHeJ_G0003211.1 mouse_genomes_project 15 74968769 74970892 + Gm15945 antisense antisense MGP_C3HHeJ_T0010012.1 MGP_C3HHeJ_G0008145.1 mouse_genomes_project 15 102744730 102776832 + miRNA miRNA MGP_C3HHeJ_T0040579.1 MGP_C3HHeJ_G0021562.1 mouse_genomes_project 15 39499013 39921317 + MGP_C3HHeJ_P0040579 Oxr1 protein_coding protein_coding MGP_C3HHeJ_T0040580.1 MGP_C3HHeJ_G0021562.1 mouse_genomes_project 15 39844742 39921317 + MGP_C3HHeJ_P0040580 Oxr1 protein_coding protein_coding MGP_C3HHeJ_T0040581.1 MGP_C3HHeJ_G0021562.1 mouse_genomes_project 15 39844742 39921322 + MGP_C3HHeJ_P0040581 Oxr1 protein_coding protein_coding MGP_C3HHeJ_T0040582.1 MGP_C3HHeJ_G0021562.1 mouse_genomes_project 15 39845223 39921317 + MGP_C3HHeJ_P0040582 Oxr1 protein_coding protein_coding MGP_C3HHeJ_T0040583.1 MGP_C3HHeJ_G0021562.1 mouse_genomes_project 15 39845231 39921320 + MGP_C3HHeJ_P0040583 Oxr1 protein_coding protein_coding MGP_C3HHeJ_T0040584.1 MGP_C3HHeJ_G0021562.1 mouse_genomes_project 15 39890690 39921317 + MGP_C3HHeJ_P0040584 Oxr1 protein_coding protein_coding MGP_C3HHeJ_T0041932.1 MGP_C3HHeJ_G0021970.1 mouse_genomes_project 15 89722344 89736968 - MGP_C3HHeJ_P0041932 Cpt1b protein_coding protein_coding MGP_C3HHeJ_T0041933.1 MGP_C3HHeJ_G0021970.1 mouse_genomes_project 15 89724700 89729747 - MGP_C3HHeJ_P0041933 Cpt1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041934.1 MGP_C3HHeJ_G0021970.1 mouse_genomes_project 15 89732856 89733564 - Cpt1b protein_coding retained_intron MGP_C3HHeJ_T0041935.1 MGP_C3HHeJ_G0021970.1 mouse_genomes_project 15 89733928 89736900 - MGP_C3HHeJ_P0041935 Cpt1b protein_coding protein_coding MGP_C3HHeJ_T0006695.1 MGP_C3HHeJ_G0005517.1 mouse_genomes_project 15 66126890 66274375 + lincRNA lincRNA MGP_C3HHeJ_T0012927.1 MGP_C3HHeJ_G0011031.1 mouse_genomes_project 15 34091229 34092158 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040318.1 MGP_C3HHeJ_G0021469.1 mouse_genomes_project 15 8019957 8053946 + MGP_C3HHeJ_P0040318 C1qtnf3 protein_coding protein_coding MGP_C3HHeJ_T0040319.1 MGP_C3HHeJ_G0021469.1 mouse_genomes_project 15 8019982 8053502 + MGP_C3HHeJ_P0040319 C1qtnf3 protein_coding protein_coding MGP_C3HHeJ_T0006676.1 MGP_C3HHeJ_G0005510.1 mouse_genomes_project 15 40759983 40789309 + Gm17473 lincRNA lincRNA MGP_C3HHeJ_T0041645.1 MGP_C3HHeJ_G0021878.1 mouse_genomes_project 15 82104629 82125256 + MGP_C3HHeJ_P0041645 Wbp2nl protein_coding protein_coding MGP_C3HHeJ_T0006682.1 MGP_C3HHeJ_G0005514.1 mouse_genomes_project 15 44806718 44824114 + 4930548G14Rik lincRNA lincRNA MGP_C3HHeJ_T0006683.1 MGP_C3HHeJ_G0005514.1 mouse_genomes_project 15 44808869 44809187 + 4930548G14Rik lincRNA lincRNA MGP_C3HHeJ_T0012955.1 MGP_C3HHeJ_G0011059.1 mouse_genomes_project 15 78159845 78160283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040979.1 MGP_C3HHeJ_G0021699.1 mouse_genomes_project 15 75183396 75188466 + MGP_C3HHeJ_P0040979 Gsdmd protein_coding protein_coding MGP_C3HHeJ_T0100257.1 MGP_C3HHeJ_G0038451.1 mouse_genomes_project 15 50942709 50942833 + Gm23267 snoRNA snoRNA MGP_C3HHeJ_T0040661.1 MGP_C3HHeJ_G0021597.1 mouse_genomes_project 15 54032827 54057849 - MGP_C3HHeJ_P0040661 Mrpl13 protein_coding protein_coding MGP_C3HHeJ_T0040662.1 MGP_C3HHeJ_G0021597.1 mouse_genomes_project 15 54032827 54057450 - MGP_C3HHeJ_P0040662 Mrpl13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040663.1 MGP_C3HHeJ_G0021597.1 mouse_genomes_project 15 54037369 54046898 - MGP_C3HHeJ_P0040663 Mrpl13 protein_coding protein_coding MGP_C3HHeJ_T0040664.1 MGP_C3HHeJ_G0021597.1 mouse_genomes_project 15 54041604 54057384 - Mrpl13 protein_coding retained_intron MGP_C3HHeJ_T0040665.1 MGP_C3HHeJ_G0021597.1 mouse_genomes_project 15 54048180 54057376 - Mrpl13 protein_coding retained_intron MGP_C3HHeJ_T0041331.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78580037 78604103 + Triobp protein_coding processed_transcript MGP_C3HHeJ_T0041332.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78580037 78641500 + MGP_C3HHeJ_P0041332 Triobp protein_coding protein_coding MGP_C3HHeJ_T0041333.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78580037 78641802 + MGP_C3HHeJ_P0041333 Triobp protein_coding protein_coding MGP_C3HHeJ_T0041334.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78580570 78585709 + Triobp protein_coding retained_intron MGP_C3HHeJ_T0041335.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78618987 78641799 + MGP_C3HHeJ_P0041335 Triobp protein_coding protein_coding MGP_C3HHeJ_T0041336.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78619002 78641797 + MGP_C3HHeJ_P0041336 Triobp protein_coding protein_coding MGP_C3HHeJ_T0041337.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78619024 78630801 + MGP_C3HHeJ_P0041337 Triobp protein_coding protein_coding MGP_C3HHeJ_T0041338.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78619652 78627382 + MGP_C3HHeJ_P0041338 Triobp protein_coding protein_coding MGP_C3HHeJ_T0041339.1 MGP_C3HHeJ_G0021797.1 mouse_genomes_project 15 78638121 78640637 + Triobp protein_coding processed_transcript MGP_C3HHeJ_T0100267.1 MGP_C3HHeJ_G0038461.1 mouse_genomes_project 15 72417732 72417855 + Gm24787 snoRNA snoRNA MGP_C3HHeJ_T0041003.1 MGP_C3HHeJ_G0021706.1 mouse_genomes_project 15 75260910 75269336 + MGP_C3HHeJ_P0041003 Zfp623 protein_coding protein_coding MGP_C3HHeJ_T0042064.1 MGP_C3HHeJ_G0022012.1 mouse_genomes_project 15 98407511 98427871 - MGP_C3HHeJ_P0042064 Endou protein_coding protein_coding MGP_C3HHeJ_T0042065.1 MGP_C3HHeJ_G0022012.1 mouse_genomes_project 15 98407511 98417616 - MGP_C3HHeJ_P0042065 Endou protein_coding protein_coding MGP_C3HHeJ_T0100249.1 MGP_C3HHeJ_G0038443.1 mouse_genomes_project 15 33431908 33432045 + Gm24771 snoRNA snoRNA MGP_C3HHeJ_T0012962.1 MGP_C3HHeJ_G0011066.1 mouse_genomes_project 15 85569172 85569580 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041317.1 MGP_C3HHeJ_G0021793.1 mouse_genomes_project 15 78505576 78524357 + MGP_C3HHeJ_P0041317 Gga1 protein_coding protein_coding MGP_C3HHeJ_T0009988.1 MGP_C3HHeJ_G0008121.1 mouse_genomes_project 15 82448145 82448205 + Gm27924 miRNA miRNA MGP_C3HHeJ_T0012944.1 MGP_C3HHeJ_G0011048.1 mouse_genomes_project 15 60946968 60948080 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040375.1 MGP_C3HHeJ_G0021487.1 mouse_genomes_project 15 18084095 18085627 - MGP_C3HHeJ_P0040375 protein_coding protein_coding MGP_C3HHeJ_T0012933.1 MGP_C3HHeJ_G0011037.1 mouse_genomes_project 15 37153025 37153956 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101760.1 MGP_C3HHeJ_G0039725.1 mouse_genomes_project 15 74562602 74562831 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0041580.1 MGP_C3HHeJ_G0021857.1 mouse_genomes_project 15 81516102 81572268 + MGP_C3HHeJ_P0041580 Zc3h7b protein_coding protein_coding MGP_C3HHeJ_T0098051.1 MGP_C3HHeJ_G0036263.1 mouse_genomes_project 15 79372457 79372581 + n-R5s40 rRNA rRNA MGP_C3HHeJ_T0041417.1 MGP_C3HHeJ_G0021817.1 mouse_genomes_project 15 79284597 79336423 - MGP_C3HHeJ_P0041417 Fam227a protein_coding protein_coding MGP_C3HHeJ_T0041418.1 MGP_C3HHeJ_G0021817.1 mouse_genomes_project 15 79287278 79336260 - MGP_C3HHeJ_P0041418 Fam227a protein_coding protein_coding MGP_C3HHeJ_T0041419.1 MGP_C3HHeJ_G0021817.1 mouse_genomes_project 15 79287332 79336260 - MGP_C3HHeJ_P0041419 Fam227a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041420.1 MGP_C3HHeJ_G0021817.1 mouse_genomes_project 15 79298106 79336204 - MGP_C3HHeJ_P0041420 Fam227a protein_coding protein_coding MGP_C3HHeJ_T0041421.1 MGP_C3HHeJ_G0021817.1 mouse_genomes_project 15 79312079 79336423 - Fam227a protein_coding retained_intron MGP_C3HHeJ_T0099018.1 MGP_C3HHeJ_G0037212.1 mouse_genomes_project 15 103550716 103550820 + Gm23590 snRNA snRNA MGP_C3HHeJ_T0009979.1 MGP_C3HHeJ_G0008112.1 mouse_genomes_project 15 80364437 80364501 + Mir6957 miRNA miRNA MGP_C3HHeJ_T0006669.1 MGP_C3HHeJ_G0005503.1 mouse_genomes_project 15 35752464 35773170 + Gm15942 lincRNA lincRNA MGP_C3HHeJ_T0101757.1 MGP_C3HHeJ_G0039722.1 mouse_genomes_project 15 74534733 74534945 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010010.1 MGP_C3HHeJ_G0008143.1 mouse_genomes_project 15 102674040 102674178 + Gm44393 miRNA miRNA MGP_C3HHeJ_T0041248.1 MGP_C3HHeJ_G0021767.1 mouse_genomes_project 15 77265666 77295637 + MGP_C3HHeJ_P0041248 protein_coding protein_coding MGP_C3HHeJ_T0003551.1 MGP_C3HHeJ_G0003218.1 mouse_genomes_project 15 86187146 86190067 - Gm15722 antisense antisense MGP_C3HHeJ_T0098991.1 MGP_C3HHeJ_G0037185.1 mouse_genomes_project 15 58737371 58737478 + Gm25875 snRNA snRNA MGP_C3HHeJ_T0042264.1 MGP_C3HHeJ_G0022075.1 mouse_genomes_project 15 100623968 100663428 - MGP_C3HHeJ_P0042264 Cers5 protein_coding protein_coding MGP_C3HHeJ_T0042265.1 MGP_C3HHeJ_G0022075.1 mouse_genomes_project 15 100624398 100663431 - MGP_C3HHeJ_P0042265 Cers5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042266.1 MGP_C3HHeJ_G0022075.1 mouse_genomes_project 15 100624705 100663567 - MGP_C3HHeJ_P0042266 Cers5 protein_coding protein_coding MGP_C3HHeJ_T0042267.1 MGP_C3HHeJ_G0022075.1 mouse_genomes_project 15 100626423 100636123 - MGP_C3HHeJ_P0042267 Cers5 protein_coding protein_coding MGP_C3HHeJ_T0042268.1 MGP_C3HHeJ_G0022075.1 mouse_genomes_project 15 100628492 100663851 - MGP_C3HHeJ_P0042268 Cers5 protein_coding protein_coding MGP_C3HHeJ_T0042269.1 MGP_C3HHeJ_G0022075.1 mouse_genomes_project 15 100635017 100663059 - MGP_C3HHeJ_P0042269 Cers5 protein_coding protein_coding MGP_C3HHeJ_T0042427.1 MGP_C3HHeJ_G0022137.1 mouse_genomes_project 15 103384981 103400628 - MGP_C3HHeJ_P0042427 Itgb7 protein_coding protein_coding MGP_C3HHeJ_T0042428.1 MGP_C3HHeJ_G0022137.1 mouse_genomes_project 15 103393439 103400628 - MGP_C3HHeJ_P0042428 Itgb7 protein_coding protein_coding MGP_C3HHeJ_T0040399.1 MGP_C3HHeJ_G0021494.1 mouse_genomes_project 15 23501193 23633160 + MGP_C3HHeJ_P0040399 Fam134b protein_coding protein_coding MGP_C3HHeJ_T0040400.1 MGP_C3HHeJ_G0021494.1 mouse_genomes_project 15 23600110 23631813 + MGP_C3HHeJ_P0040400 Fam134b protein_coding protein_coding MGP_C3HHeJ_T0042058.1 MGP_C3HHeJ_G0022007.1 mouse_genomes_project 15 97411941 97412322 - MGP_C3HHeJ_P0042058 Gm8888 protein_coding protein_coding MGP_C3HHeJ_T0042522.1 MGP_C3HHeJ_G0022159.1 mouse_genomes_project 15 104179030 104182312 + MGP_C3HHeJ_P0042522 Hoxc11 protein_coding protein_coding MGP_C3HHeJ_T0100274.1 MGP_C3HHeJ_G0038468.1 mouse_genomes_project 15 98778487 98778616 + Gm25668 snoRNA snoRNA MGP_C3HHeJ_T0042237.1 MGP_C3HHeJ_G0022064.1 mouse_genomes_project 15 100342169 100346806 - MGP_C3HHeJ_P0042237 Bcdin3d protein_coding protein_coding MGP_C3HHeJ_T0003547.1 MGP_C3HHeJ_G0003214.1 mouse_genomes_project 15 79088391 79092777 + Gm16059 antisense antisense MGP_C3HHeJ_T0040637.1 MGP_C3HHeJ_G0021586.1 mouse_genomes_project 15 52350672 52352364 + MGP_C3HHeJ_P0040637 Gm7489 protein_coding protein_coding MGP_C3HHeJ_T0041845.1 MGP_C3HHeJ_G0021948.1 mouse_genomes_project 15 89260611 89272888 + Mov10l1 protein_coding retained_intron MGP_C3HHeJ_T0041846.1 MGP_C3HHeJ_G0021948.1 mouse_genomes_project 15 89260611 89329744 + MGP_C3HHeJ_P0041846 Mov10l1 protein_coding protein_coding MGP_C3HHeJ_T0041847.1 MGP_C3HHeJ_G0021948.1 mouse_genomes_project 15 89260696 89329748 + MGP_C3HHeJ_P0041847 Mov10l1 protein_coding protein_coding MGP_C3HHeJ_T0041848.1 MGP_C3HHeJ_G0021948.1 mouse_genomes_project 15 89298155 89301356 + Mov10l1 protein_coding processed_transcript MGP_C3HHeJ_T0041849.1 MGP_C3HHeJ_G0021948.1 mouse_genomes_project 15 89301347 89329744 + MGP_C3HHeJ_P0041849 Mov10l1 protein_coding protein_coding MGP_C3HHeJ_T0098981.1 MGP_C3HHeJ_G0037175.1 mouse_genomes_project 15 43061635 43061728 + Gm24768 snRNA snRNA MGP_C3HHeJ_T0042435.1 MGP_C3HHeJ_G0022139.1 mouse_genomes_project 15 103450766 103453055 + MGP_C3HHeJ_P0042435 Mfsd5 protein_coding protein_coding MGP_C3HHeJ_T0040707.1 MGP_C3HHeJ_G0021609.1 mouse_genomes_project 15 56656310 56698000 - MGP_C3HHeJ_P0040707 Atad2 protein_coding protein_coding MGP_C3HHeJ_T0040891.1 MGP_C3HHeJ_G0021667.1 mouse_genomes_project 15 73721996 73753127 - MGP_C3HHeJ_P0040891 Mroh4 protein_coding protein_coding MGP_C3HHeJ_T0040892.1 MGP_C3HHeJ_G0021667.1 mouse_genomes_project 15 73721996 73751623 - MGP_C3HHeJ_P0040892 Mroh4 protein_coding protein_coding MGP_C3HHeJ_T0040893.1 MGP_C3HHeJ_G0021667.1 mouse_genomes_project 15 73722370 73727980 - MGP_C3HHeJ_P0040893 Mroh4 protein_coding protein_coding MGP_C3HHeJ_T0040894.1 MGP_C3HHeJ_G0021667.1 mouse_genomes_project 15 73722382 73724196 - Mroh4 protein_coding retained_intron MGP_C3HHeJ_T0040895.1 MGP_C3HHeJ_G0021667.1 mouse_genomes_project 15 73732105 73745158 - MGP_C3HHeJ_P0040895 Mroh4 protein_coding protein_coding MGP_C3HHeJ_T0040896.1 MGP_C3HHeJ_G0021667.1 mouse_genomes_project 15 73748393 73753072 - Mroh4 protein_coding processed_transcript MGP_C3HHeJ_T0041526.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80740775 80920464 - MGP_C3HHeJ_P0041526 Mkl1 protein_coding protein_coding MGP_C3HHeJ_T0041527.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80740775 80920440 - MGP_C3HHeJ_P0041527 Mkl1 protein_coding protein_coding MGP_C3HHeJ_T0041528.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80740785 80838526 - MGP_C3HHeJ_P0041528 Mkl1 protein_coding protein_coding MGP_C3HHeJ_T0041529.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80740785 80920430 - MGP_C3HHeJ_P0041529 Mkl1 protein_coding protein_coding MGP_C3HHeJ_T0041530.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80744348 80776226 - MGP_C3HHeJ_P0041530 Mkl1 protein_coding protein_coding MGP_C3HHeJ_T0041531.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80745257 80746683 - Mkl1 protein_coding retained_intron MGP_C3HHeJ_T0041532.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80748732 80749797 - Mkl1 protein_coding retained_intron MGP_C3HHeJ_T0041533.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80750983 80753505 - Mkl1 protein_coding retained_intron MGP_C3HHeJ_T0041534.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80756646 80920435 - Mkl1 protein_coding retained_intron MGP_C3HHeJ_T0041535.1 MGP_C3HHeJ_G0021845.1 mouse_genomes_project 15 80775812 80920229 - Mkl1 protein_coding retained_intron MGP_C3HHeJ_T0040716.1 MGP_C3HHeJ_G0021616.1 mouse_genomes_project 15 57380202 57423209 - MGP_C3HHeJ_P0040716 Tmem65 protein_coding protein_coding MGP_C3HHeJ_T0041819.1 MGP_C3HHeJ_G0021937.1 mouse_genomes_project 15 86240717 86264606 - Cerk protein_coding retained_intron MGP_C3HHeJ_T0041820.1 MGP_C3HHeJ_G0021937.1 mouse_genomes_project 15 86240718 86297327 - MGP_C3HHeJ_P0041820 Cerk protein_coding protein_coding MGP_C3HHeJ_T0041821.1 MGP_C3HHeJ_G0021937.1 mouse_genomes_project 15 86241913 86255614 - MGP_C3HHeJ_P0041821 Cerk protein_coding protein_coding MGP_C3HHeJ_T0006730.1 MGP_C3HHeJ_G0005542.1 mouse_genomes_project 15 103441861 103445420 + lincRNA lincRNA MGP_C3HHeJ_T0041926.1 MGP_C3HHeJ_G0021966.1 mouse_genomes_project 15 89680186 89681991 - MGP_C3HHeJ_P0041926 Odf3b protein_coding protein_coding MGP_C3HHeJ_T0041927.1 MGP_C3HHeJ_G0021966.1 mouse_genomes_project 15 89680242 89681915 - MGP_C3HHeJ_P0041927 Odf3b protein_coding unknown_likely_coding MGP_C3HHeJ_T0041581.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81578425 81602814 + MGP_C3HHeJ_P0041581 Tef protein_coding protein_coding MGP_C3HHeJ_T0041582.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81578711 81582054 + Tef protein_coding processed_transcript MGP_C3HHeJ_T0041583.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81578734 81581359 + Tef protein_coding processed_transcript MGP_C3HHeJ_T0041584.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81578741 81593017 + Tef protein_coding retained_intron MGP_C3HHeJ_T0041585.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81578830 81581916 + Tef protein_coding processed_transcript MGP_C3HHeJ_T0041586.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81587050 81597206 + MGP_C3HHeJ_P0041586 Tef protein_coding protein_coding MGP_C3HHeJ_T0041587.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81587418 81602651 + MGP_C3HHeJ_P0041587 Tef protein_coding protein_coding MGP_C3HHeJ_T0041588.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81588163 81591214 + MGP_C3HHeJ_P0041588 Tef protein_coding protein_coding MGP_C3HHeJ_T0041589.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81596542 81597333 + Tef protein_coding processed_transcript MGP_C3HHeJ_T0041590.1 MGP_C3HHeJ_G0021858.1 mouse_genomes_project 15 81596892 81599732 + Tef protein_coding retained_intron MGP_C3HHeJ_T0012922.1 MGP_C3HHeJ_G0011026.1 mouse_genomes_project 15 10640024 10640807 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041353.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78770746 78776325 - 1700088E04Rik protein_coding processed_transcript MGP_C3HHeJ_T0041354.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776063 78782587 - MGP_C3HHeJ_P0041354 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041355.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776063 78782639 - MGP_C3HHeJ_P0041355 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041356.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776069 78782653 - MGP_C3HHeJ_P0041356 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041357.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776400 78782630 - MGP_C3HHeJ_P0041357 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041358.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776417 78778126 - 1700088E04Rik protein_coding processed_transcript MGP_C3HHeJ_T0041359.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776425 78782634 - MGP_C3HHeJ_P0041359 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041360.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776464 78782605 - MGP_C3HHeJ_P0041360 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041361.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78776490 78782582 - MGP_C3HHeJ_P0041361 1700088E04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041362.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78778548 78782603 - MGP_C3HHeJ_P0041362 1700088E04Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041363.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78778836 78780683 - MGP_C3HHeJ_P0041363 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041364.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78778839 78782653 - MGP_C3HHeJ_P0041364 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0041365.1 MGP_C3HHeJ_G0021803.1 mouse_genomes_project 15 78778841 78782378 - MGP_C3HHeJ_P0041365 1700088E04Rik protein_coding protein_coding MGP_C3HHeJ_T0040954.1 MGP_C3HHeJ_G0021691.1 mouse_genomes_project 15 74687825 74828387 + MGP_C3HHeJ_P0040954 Ly6l protein_coding protein_coding MGP_C3HHeJ_T0042083.1 MGP_C3HHeJ_G0022014.1 mouse_genomes_project 15 98485046 98493371 + MGP_C3HHeJ_P0042083 Slc48a1 protein_coding protein_coding MGP_C3HHeJ_T0042084.1 MGP_C3HHeJ_G0022014.1 mouse_genomes_project 15 98485119 98490646 + MGP_C3HHeJ_P0042084 Slc48a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0009948.1 MGP_C3HHeJ_G0008081.1 mouse_genomes_project 15 27481899 27481973 - Mir3964 miRNA miRNA MGP_C3HHeJ_T0042277.1 MGP_C3HHeJ_G0022079.1 mouse_genomes_project 15 100956595 101155233 + MGP_C3HHeJ_P0042277 Dip2b protein_coding protein_coding MGP_C3HHeJ_T0042278.1 MGP_C3HHeJ_G0022079.1 mouse_genomes_project 15 101076600 101151429 + MGP_C3HHeJ_P0042278 Dip2b protein_coding protein_coding MGP_C3HHeJ_T0042279.1 MGP_C3HHeJ_G0022079.1 mouse_genomes_project 15 101076600 101155233 + MGP_C3HHeJ_P0042279 Dip2b protein_coding protein_coding MGP_C3HHeJ_T0042280.1 MGP_C3HHeJ_G0022079.1 mouse_genomes_project 15 101138925 101141419 + Dip2b protein_coding processed_transcript MGP_C3HHeJ_T0098988.1 MGP_C3HHeJ_G0037182.1 mouse_genomes_project 15 53756386 53756448 - Gm26296 snRNA snRNA MGP_C3HHeJ_T0040675.1 MGP_C3HHeJ_G0021600.1 mouse_genomes_project 15 55193236 55224456 - MGP_C3HHeJ_P0040675 Has2 protein_coding protein_coding MGP_C3HHeJ_T0042142.1 MGP_C3HHeJ_G0022032.1 mouse_genomes_project 15 99251001 99253353 - MGP_C3HHeJ_P0042142 Lalba protein_coding protein_coding MGP_C3HHeJ_T0042408.1 MGP_C3HHeJ_G0022131.1 mouse_genomes_project 15 103264511 103278177 + MGP_C3HHeJ_P0042408 Tns2 protein_coding protein_coding MGP_C3HHeJ_T0042409.1 MGP_C3HHeJ_G0022131.1 mouse_genomes_project 15 103264511 103278187 + MGP_C3HHeJ_P0042409 Tns2 protein_coding protein_coding MGP_C3HHeJ_T0040843.1 MGP_C3HHeJ_G0021655.1 mouse_genomes_project 15 71542805 71580016 - MGP_C3HHeJ_P0040843 Kcnk9 protein_coding protein_coding MGP_C3HHeJ_T0041002.1 MGP_C3HHeJ_G0021705.1 mouse_genomes_project 15 75246536 75251629 - MGP_C3HHeJ_P0041002 Tsta3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012917.1 MGP_C3HHeJ_G0011021.1 mouse_genomes_project 15 5560863 5561163 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100268.1 MGP_C3HHeJ_G0038462.1 mouse_genomes_project 15 75075389 75075520 + Gm23747 snoRNA snoRNA MGP_C3HHeJ_T0101361.1 MGP_C3HHeJ_G0039429.1 mouse_genomes_project 15 74509146 74512301 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0041613.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81772235 81807526 + MGP_C3HHeJ_P0041613 Xrcc6 protein_coding protein_coding MGP_C3HHeJ_T0041620.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81801682 81827349 + MGP_C3HHeJ_P0041620 Xrcc6 protein_coding protein_coding MGP_C3HHeJ_T0041621.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81801746 81810601 + MGP_C3HHeJ_P0041621 Xrcc6 protein_coding protein_coding MGP_C3HHeJ_T0041622.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81801797 81810650 + MGP_C3HHeJ_P0041622 Xrcc6 protein_coding protein_coding MGP_C3HHeJ_T0041623.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81807234 81807882 + Xrcc6 protein_coding retained_intron MGP_C3HHeJ_T0041624.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81807927 81812722 + Xrcc6 protein_coding retained_intron MGP_C3HHeJ_T0041625.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81810352 81814561 + Xrcc6 protein_coding retained_intron MGP_C3HHeJ_T0041626.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81813029 81827058 + Xrcc6 protein_coding processed_transcript MGP_C3HHeJ_T0041627.1 MGP_C3HHeJ_G0021866.1 mouse_genomes_project 15 81814028 81823664 + Xrcc6 protein_coding retained_intron MGP_C3HHeJ_T0098985.1 MGP_C3HHeJ_G0037179.1 mouse_genomes_project 15 47849051 47849157 + Gm23848 snRNA snRNA MGP_C3HHeJ_T0100244.1 MGP_C3HHeJ_G0038438.1 mouse_genomes_project 15 28970210 28970344 - Gm26416 snoRNA snoRNA MGP_C3HHeJ_T0040695.1 MGP_C3HHeJ_G0021607.1 mouse_genomes_project 15 56588968 56638397 - MGP_C3HHeJ_P0040695 Gm29394 protein_coding protein_coding MGP_C3HHeJ_T0040698.1 MGP_C3HHeJ_G0021607.1 mouse_genomes_project 15 56591684 56638179 - MGP_C3HHeJ_P0040698 Gm29394 protein_coding protein_coding MGP_C3HHeJ_T0040702.1 MGP_C3HHeJ_G0021607.1 mouse_genomes_project 15 56610055 56638155 - MGP_C3HHeJ_P0040702 Gm29394 protein_coding protein_coding MGP_C3HHeJ_T0040703.1 MGP_C3HHeJ_G0021607.1 mouse_genomes_project 15 56610174 56638178 - MGP_C3HHeJ_P0040703 Gm29394 protein_coding protein_coding MGP_C3HHeJ_T0006700.1 MGP_C3HHeJ_G0005522.1 mouse_genomes_project 15 79369106 79372341 - Gm26884 lincRNA lincRNA MGP_C3HHeJ_T0041976.1 MGP_C3HHeJ_G0021980.1 mouse_genomes_project 15 91293007 91411518 - MGP_C3HHeJ_P0041976 Kif21a protein_coding protein_coding MGP_C3HHeJ_T0041977.1 MGP_C3HHeJ_G0021980.1 mouse_genomes_project 15 91293007 91411518 - MGP_C3HHeJ_P0041977 Kif21a protein_coding protein_coding MGP_C3HHeJ_T0041978.1 MGP_C3HHeJ_G0021980.1 mouse_genomes_project 15 91293007 91411518 - MGP_C3HHeJ_P0041978 Kif21a protein_coding protein_coding MGP_C3HHeJ_T0041979.1 MGP_C3HHeJ_G0021980.1 mouse_genomes_project 15 91293007 91411518 - MGP_C3HHeJ_P0041979 Kif21a protein_coding protein_coding MGP_C3HHeJ_T0041980.1 MGP_C3HHeJ_G0021980.1 mouse_genomes_project 15 91293007 91411518 - MGP_C3HHeJ_P0041980 Kif21a protein_coding protein_coding MGP_C3HHeJ_T0100260.1 MGP_C3HHeJ_G0038454.1 mouse_genomes_project 15 56709455 56709582 + Gm22488 snoRNA snoRNA MGP_C3HHeJ_T0040681.1 MGP_C3HHeJ_G0021603.1 mouse_genomes_project 15 56424781 56447070 - MGP_C3HHeJ_P0040681 Derl1 protein_coding protein_coding MGP_C3HHeJ_T0042417.1 MGP_C3HHeJ_G0022135.1 mouse_genomes_project 15 103345194 103359211 - MGP_C3HHeJ_P0042417 Csad protein_coding protein_coding MGP_C3HHeJ_T0042170.1 MGP_C3HHeJ_G0022042.1 mouse_genomes_project 15 99545432 99572889 - MGP_C3HHeJ_P0042170 Arf3 protein_coding protein_coding MGP_C3HHeJ_T0042171.1 MGP_C3HHeJ_G0022042.1 mouse_genomes_project 15 99548737 99572892 - Arf3 protein_coding processed_transcript MGP_C3HHeJ_T0042172.1 MGP_C3HHeJ_G0022042.1 mouse_genomes_project 15 99550272 99572670 - MGP_C3HHeJ_P0042172 Arf3 protein_coding protein_coding MGP_C3HHeJ_T0040906.1 MGP_C3HHeJ_G0021674.1 mouse_genomes_project 15 73861465 73865395 - MGP_C3HHeJ_P0040906 Slurp2 protein_coding protein_coding MGP_C3HHeJ_T0006718.1 MGP_C3HHeJ_G0005534.1 mouse_genomes_project 15 96742671 96900303 - 2610037D02Rik lincRNA lincRNA MGP_C3HHeJ_T0006722.1 MGP_C3HHeJ_G0005534.1 mouse_genomes_project 15 96898193 96901190 - 2610037D02Rik lincRNA lincRNA MGP_C3HHeJ_T0100241.1 MGP_C3HHeJ_G0038435.1 mouse_genomes_project 15 27770652 27770725 - Gm24554 snoRNA snoRNA MGP_C3HHeJ_T0041784.1 MGP_C3HHeJ_G0021928.1 mouse_genomes_project 15 85595079 85639703 - MGP_C3HHeJ_P0041784 Wnt7b protein_coding protein_coding MGP_C3HHeJ_T0041785.1 MGP_C3HHeJ_G0021928.1 mouse_genomes_project 15 85595083 85644269 - MGP_C3HHeJ_P0041785 Wnt7b protein_coding protein_coding MGP_C3HHeJ_T0041752.1 MGP_C3HHeJ_G0021913.1 mouse_genomes_project 15 84369808 84441717 - MGP_C3HHeJ_P0041752 1810041L15Rik protein_coding protein_coding MGP_C3HHeJ_T0041753.1 MGP_C3HHeJ_G0021913.1 mouse_genomes_project 15 84370650 84440295 - MGP_C3HHeJ_P0041753 1810041L15Rik protein_coding protein_coding MGP_C3HHeJ_T0041754.1 MGP_C3HHeJ_G0021913.1 mouse_genomes_project 15 84397170 84440360 - MGP_C3HHeJ_P0041754 1810041L15Rik protein_coding protein_coding MGP_C3HHeJ_T0041755.1 MGP_C3HHeJ_G0021913.1 mouse_genomes_project 15 84407892 84437444 - MGP_C3HHeJ_P0041755 1810041L15Rik protein_coding protein_coding MGP_C3HHeJ_T0042415.1 MGP_C3HHeJ_G0022134.1 mouse_genomes_project 15 103316795 103330926 + MGP_C3HHeJ_P0042415 Soat2 protein_coding protein_coding MGP_C3HHeJ_T0042416.1 MGP_C3HHeJ_G0022134.1 mouse_genomes_project 15 103317389 103330584 + MGP_C3HHeJ_P0042416 Soat2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040832.1 MGP_C3HHeJ_G0021651.1 mouse_genomes_project 15 66985800 67165124 - MGP_C3HHeJ_P0040832 Zfat protein_coding protein_coding MGP_C3HHeJ_T0040833.1 MGP_C3HHeJ_G0021651.1 mouse_genomes_project 15 66986355 67165055 - MGP_C3HHeJ_P0040833 Zfat protein_coding protein_coding MGP_C3HHeJ_T0040834.1 MGP_C3HHeJ_G0021651.1 mouse_genomes_project 15 66986356 67165106 - MGP_C3HHeJ_P0040834 Zfat protein_coding protein_coding MGP_C3HHeJ_T0040835.1 MGP_C3HHeJ_G0021651.1 mouse_genomes_project 15 67083580 67165115 - MGP_C3HHeJ_P0040835 Zfat protein_coding protein_coding MGP_C3HHeJ_T0040836.1 MGP_C3HHeJ_G0021651.1 mouse_genomes_project 15 67126831 67165117 - Zfat protein_coding retained_intron MGP_C3HHeJ_T0000902.1 MGP_C3HHeJ_G0000842.1 mouse_genomes_project 15 4651407 4651783 - TEC TEC MGP_C3HHeJ_T0042119.1 MGP_C3HHeJ_G0022021.1 mouse_genomes_project 15 98844577 98876279 - MGP_C3HHeJ_P0042119 Asb8 protein_coding protein_coding MGP_C3HHeJ_T0042120.1 MGP_C3HHeJ_G0022021.1 mouse_genomes_project 15 98845654 98855688 - MGP_C3HHeJ_P0042120 Asb8 protein_coding protein_coding MGP_C3HHeJ_T0042121.1 MGP_C3HHeJ_G0022021.1 mouse_genomes_project 15 98845654 98855641 - MGP_C3HHeJ_P0042121 Asb8 protein_coding protein_coding MGP_C3HHeJ_T0042122.1 MGP_C3HHeJ_G0022021.1 mouse_genomes_project 15 98845654 98876214 - MGP_C3HHeJ_P0042122 Asb8 protein_coding protein_coding MGP_C3HHeJ_T0017221.1 MGP_C3HHeJ_G0015052.1 mouse_genomes_project 15 4373769 4388371 + Gm16029 processed_transcript processed_transcript MGP_C3HHeJ_T0040734.1 MGP_C3HHeJ_G0021628.1 mouse_genomes_project 15 59472235 59478321 - MGP_C3HHeJ_P0040734 Fam84b protein_coding protein_coding MGP_C3HHeJ_T0040735.1 MGP_C3HHeJ_G0021628.1 mouse_genomes_project 15 59478272 59507796 - Fam84b protein_coding processed_transcript MGP_C3HHeJ_T0040666.1 MGP_C3HHeJ_G0021598.1 mouse_genomes_project 15 54057508 54133884 + MGP_C3HHeJ_P0040666 Mtbp protein_coding protein_coding MGP_C3HHeJ_T0040667.1 MGP_C3HHeJ_G0021598.1 mouse_genomes_project 15 54057695 54114122 + MGP_C3HHeJ_P0040667 Mtbp protein_coding protein_coding MGP_C3HHeJ_T0040668.1 MGP_C3HHeJ_G0021598.1 mouse_genomes_project 15 54057835 54069178 + MGP_C3HHeJ_P0040668 Mtbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040669.1 MGP_C3HHeJ_G0021598.1 mouse_genomes_project 15 54078232 54133883 + MGP_C3HHeJ_P0040669 Mtbp protein_coding protein_coding MGP_C3HHeJ_T0040670.1 MGP_C3HHeJ_G0021598.1 mouse_genomes_project 15 54123710 54126062 + Mtbp protein_coding retained_intron MGP_C3HHeJ_T0040671.1 MGP_C3HHeJ_G0021598.1 mouse_genomes_project 15 54127575 54133882 + Mtbp protein_coding processed_transcript MGP_C3HHeJ_T0042165.1 MGP_C3HHeJ_G0022039.1 mouse_genomes_project 15 99458970 99472659 - MGP_C3HHeJ_P0042165 Rnd1 protein_coding protein_coding MGP_C3HHeJ_T0042166.1 MGP_C3HHeJ_G0022039.1 mouse_genomes_project 15 99464503 99472660 - MGP_C3HHeJ_P0042166 Rnd1 protein_coding protein_coding MGP_C3HHeJ_T0042167.1 MGP_C3HHeJ_G0022039.1 mouse_genomes_project 15 99467493 99472657 - MGP_C3HHeJ_P0042167 Rnd1 protein_coding protein_coding MGP_C3HHeJ_T0009947.1 MGP_C3HHeJ_G0008080.1 mouse_genomes_project 15 25289297 25289362 + Mir7117 miRNA miRNA MGP_C3HHeJ_T0041285.1 MGP_C3HHeJ_G0021779.1 mouse_genomes_project 15 78004129 78010427 - MGP_C3HHeJ_P0041285 Tst protein_coding protein_coding MGP_C3HHeJ_T0040744.1 MGP_C3HHeJ_G0021631.1 mouse_genomes_project 15 62559485 62610542 - MGP_C3HHeJ_P0040744 Gsdmc protein_coding protein_coding MGP_C3HHeJ_T0040745.1 MGP_C3HHeJ_G0021631.1 mouse_genomes_project 15 62562977 62606378 - MGP_C3HHeJ_P0040745 Gsdmc protein_coding protein_coding MGP_C3HHeJ_T0041340.1 MGP_C3HHeJ_G0021798.1 mouse_genomes_project 15 78665483 78667770 + MGP_C3HHeJ_P0041340 H1f0 protein_coding protein_coding MGP_C3HHeJ_T0040577.1 MGP_C3HHeJ_G0021560.1 mouse_genomes_project 15 38127889 38134419 + MGP_C3HHeJ_P0040577 9330182O14Rik protein_coding protein_coding MGP_C3HHeJ_T0041436.1 MGP_C3HHeJ_G0021823.1 mouse_genomes_project 15 79436139 79448942 - MGP_C3HHeJ_P0041436 Dnal4 protein_coding protein_coding MGP_C3HHeJ_T0041437.1 MGP_C3HHeJ_G0021823.1 mouse_genomes_project 15 79436142 79449026 - MGP_C3HHeJ_P0041437 Dnal4 protein_coding protein_coding MGP_C3HHeJ_T0041438.1 MGP_C3HHeJ_G0021823.1 mouse_genomes_project 15 79439673 79451539 - Dnal4 protein_coding processed_transcript MGP_C3HHeJ_T0041439.1 MGP_C3HHeJ_G0021823.1 mouse_genomes_project 15 79449130 79452416 - Dnal4 protein_coding processed_transcript MGP_C3HHeJ_T0011299.1 MGP_C3HHeJ_G0009432.1 mouse_genomes_project 15 86252810 86253078 + Gm24011 misc_RNA misc_RNA MGP_C3HHeJ_T0041312.1 MGP_C3HHeJ_G0021790.1 mouse_genomes_project 15 78394692 78422449 - MGP_C3HHeJ_P0041312 Card10 protein_coding protein_coding MGP_C3HHeJ_T0041313.1 MGP_C3HHeJ_G0021790.1 mouse_genomes_project 15 78395475 78422076 - MGP_C3HHeJ_P0041313 Card10 protein_coding protein_coding MGP_C3HHeJ_T0041314.1 MGP_C3HHeJ_G0021790.1 mouse_genomes_project 15 78406449 78409526 - Card10 protein_coding processed_transcript MGP_C3HHeJ_T0042387.1 MGP_C3HHeJ_G0022112.1 mouse_genomes_project 15 102658068 102667546 - MGP_C3HHeJ_P0042387 Krt82 protein_coding protein_coding MGP_C3HHeJ_T0098970.1 MGP_C3HHeJ_G0037164.1 mouse_genomes_project 15 9289950 9290059 - Gm25713 snRNA snRNA MGP_C3HHeJ_T0009987.1 MGP_C3HHeJ_G0008120.1 mouse_genomes_project 15 82435615 82435675 - Gm27825 miRNA miRNA MGP_C3HHeJ_T0042418.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103372933 103384608 + MGP_C3HHeJ_P0042418 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042419.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103372944 103384601 + MGP_C3HHeJ_P0042419 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042420.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103372976 103377626 + MGP_C3HHeJ_P0042420 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042421.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103372994 103378148 + MGP_C3HHeJ_P0042421 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042422.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103373894 103384609 + MGP_C3HHeJ_P0042422 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042423.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103374031 103378062 + MGP_C3HHeJ_P0042423 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042424.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103374065 103378050 + MGP_C3HHeJ_P0042424 Zfp740 protein_coding protein_coding MGP_C3HHeJ_T0042425.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103376901 103377932 + Zfp740 protein_coding retained_intron MGP_C3HHeJ_T0042426.1 MGP_C3HHeJ_G0022136.1 mouse_genomes_project 15 103377545 103384604 + Zfp740 protein_coding retained_intron MGP_C3HHeJ_T0041498.1 MGP_C3HHeJ_G0021840.1 mouse_genomes_project 15 80389805 80419091 + MGP_C3HHeJ_P0041498 Fam83f protein_coding protein_coding MGP_C3HHeJ_T0041031.1 MGP_C3HHeJ_G0021715.1 mouse_genomes_project 15 75444983 75452063 - MGP_C3HHeJ_P0041031 BC024139 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041032.1 MGP_C3HHeJ_G0021715.1 mouse_genomes_project 15 75444986 75452009 - MGP_C3HHeJ_P0041032 BC024139 protein_coding protein_coding MGP_C3HHeJ_T0041033.1 MGP_C3HHeJ_G0021715.1 mouse_genomes_project 15 75444987 75452023 - MGP_C3HHeJ_P0041033 BC024139 protein_coding protein_coding MGP_C3HHeJ_T0041034.1 MGP_C3HHeJ_G0021715.1 mouse_genomes_project 15 75448275 75451538 - BC024139 protein_coding processed_transcript MGP_C3HHeJ_T0012971.1 MGP_C3HHeJ_G0011075.1 mouse_genomes_project 15 100799104 100799374 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041000.1 MGP_C3HHeJ_G0021703.1 mouse_genomes_project 15 75231485 75236268 + MGP_C3HHeJ_P0041000 Tigd5 protein_coding protein_coding MGP_C3HHeJ_T0040177.1 MGP_C3HHeJ_G0021432.1 mouse_genomes_project 15 1889693 1971736 - MGP_C3HHeJ_P0040177 C7 protein_coding protein_coding MGP_C3HHeJ_T0100264.1 MGP_C3HHeJ_G0038458.1 mouse_genomes_project 15 68371177 68371309 - Gm24232 snoRNA snoRNA MGP_C3HHeJ_T0040482.1 MGP_C3HHeJ_G0021529.1 mouse_genomes_project 15 33310085 33893524 + MGP_C3HHeJ_P0040482 Vps13b protein_coding protein_coding MGP_C3HHeJ_T0040159.1 MGP_C3HHeJ_G0021426.1 mouse_genomes_project 15 850420 866445 - MGP_C3HHeJ_P0040159 Fbxo4 protein_coding protein_coding MGP_C3HHeJ_T0040160.1 MGP_C3HHeJ_G0021426.1 mouse_genomes_project 15 854818 858583 - Fbxo4 protein_coding processed_transcript MGP_C3HHeJ_T0040161.1 MGP_C3HHeJ_G0021426.1 mouse_genomes_project 15 857046 857745 - Fbxo4 protein_coding retained_intron MGP_C3HHeJ_T0011287.1 MGP_C3HHeJ_G0009420.1 mouse_genomes_project 15 7090666 7090954 + Gm26350 misc_RNA misc_RNA MGP_C3HHeJ_T0098049.1 MGP_C3HHeJ_G0036261.1 mouse_genomes_project 15 31478470 31478601 - Gm24476 rRNA rRNA MGP_C3HHeJ_T0042175.1 MGP_C3HHeJ_G0022044.1 mouse_genomes_project 15 99603285 99607260 + MGP_C3HHeJ_P0042175 Wnt1 protein_coding protein_coding MGP_C3HHeJ_T0041368.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78870740 78891223 + MGP_C3HHeJ_P0041368 Pick1 protein_coding protein_coding MGP_C3HHeJ_T0041369.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78870949 78891205 + MGP_C3HHeJ_P0041369 Pick1 protein_coding protein_coding MGP_C3HHeJ_T0041370.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78870958 78898414 + MGP_C3HHeJ_P0041370 Pick1 protein_coding protein_coding MGP_C3HHeJ_T0041371.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78870978 78889701 + Pick1 protein_coding retained_intron MGP_C3HHeJ_T0041372.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78870983 78889701 + Pick1 protein_coding retained_intron MGP_C3HHeJ_T0041373.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78871025 78875889 + Pick1 protein_coding processed_transcript MGP_C3HHeJ_T0041374.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78871072 78883143 + Pick1 protein_coding retained_intron MGP_C3HHeJ_T0041375.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78871270 78891068 + MGP_C3HHeJ_P0041375 Pick1 protein_coding protein_coding MGP_C3HHeJ_T0041376.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78884741 78889366 + Pick1 protein_coding processed_transcript MGP_C3HHeJ_T0041377.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78886606 78889334 + Pick1 protein_coding processed_transcript MGP_C3HHeJ_T0041378.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78887003 78889470 + Pick1 protein_coding processed_transcript MGP_C3HHeJ_T0041379.1 MGP_C3HHeJ_G0021806.1 mouse_genomes_project 15 78888068 78891205 + Pick1 protein_coding processed_transcript MGP_C3HHeJ_T0041658.1 MGP_C3HHeJ_G0021884.1 mouse_genomes_project 15 82206659 82212122 - MGP_C3HHeJ_P0041658 protein_coding protein_coding MGP_C3HHeJ_T0040316.1 MGP_C3HHeJ_G0021468.1 mouse_genomes_project 15 7625997 7777152 - MGP_C3HHeJ_P0040316 Rai14 protein_coding protein_coding MGP_C3HHeJ_T0040317.1 MGP_C3HHeJ_G0021468.1 mouse_genomes_project 15 7625997 7778243 - MGP_C3HHeJ_P0040317 Rai14 protein_coding protein_coding MGP_C3HHeJ_T0100248.1 MGP_C3HHeJ_G0038442.1 mouse_genomes_project 15 32330507 32330639 - Gm24523 snoRNA snoRNA MGP_C3HHeJ_T0101362.1 MGP_C3HHeJ_G0039430.1 mouse_genomes_project 15 74662653 74666877 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101363.1 MGP_C3HHeJ_G0039430.1 mouse_genomes_project 15 74663013 74666484 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0040980.1 MGP_C3HHeJ_G0021700.1 mouse_genomes_project 15 75205890 75210523 - MGP_C3HHeJ_P0040980 Mroh6 protein_coding protein_coding MGP_C3HHeJ_T0041451.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79565557 79579434 + MGP_C3HHeJ_P0041451 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041452.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79565592 79579487 + MGP_C3HHeJ_P0041452 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041453.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79565947 79570827 + Apobec3 protein_coding processed_transcript MGP_C3HHeJ_T0041454.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566304 79582321 + MGP_C3HHeJ_P0041454 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041455.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566307 79579379 + MGP_C3HHeJ_P0041455 Apobec3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041456.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566338 79581260 + MGP_C3HHeJ_P0041456 Apobec3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041457.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566344 79581980 + MGP_C3HHeJ_P0041457 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041458.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566345 79582328 + MGP_C3HHeJ_P0041458 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041459.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566351 79589476 + MGP_C3HHeJ_P0041459 Apobec3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041460.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79566380 79581260 + MGP_C3HHeJ_P0041460 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041461.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79568952 79571248 + MGP_C3HHeJ_P0041461 Apobec3 protein_coding protein_coding MGP_C3HHeJ_T0041462.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79570885 79579797 + Apobec3 protein_coding retained_intron MGP_C3HHeJ_T0041463.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79573010 79581815 + Apobec3 protein_coding retained_intron MGP_C3HHeJ_T0041464.1 MGP_C3HHeJ_G0021827.1 mouse_genomes_project 15 79580001 79580968 + Apobec3 protein_coding retained_intron MGP_C3HHeJ_T0041488.1 MGP_C3HHeJ_G0021836.1 mouse_genomes_project 15 79961426 79965099 - MGP_C3HHeJ_P0041488 Rps19bp1 protein_coding protein_coding MGP_C3HHeJ_T0042159.1 MGP_C3HHeJ_G0022038.1 mouse_genomes_project 15 99438133 99458439 - MGP_C3HHeJ_P0042159 Ddx23 protein_coding protein_coding MGP_C3HHeJ_T0042160.1 MGP_C3HHeJ_G0022038.1 mouse_genomes_project 15 99440966 99458434 - Ddx23 protein_coding retained_intron MGP_C3HHeJ_T0042161.1 MGP_C3HHeJ_G0022038.1 mouse_genomes_project 15 99440979 99458431 - Ddx23 protein_coding retained_intron MGP_C3HHeJ_T0042162.1 MGP_C3HHeJ_G0022038.1 mouse_genomes_project 15 99446417 99458434 - Ddx23 protein_coding retained_intron MGP_C3HHeJ_T0042163.1 MGP_C3HHeJ_G0022038.1 mouse_genomes_project 15 99451054 99458408 - MGP_C3HHeJ_P0042163 Ddx23 protein_coding protein_coding MGP_C3HHeJ_T0042164.1 MGP_C3HHeJ_G0022038.1 mouse_genomes_project 15 99452272 99458439 - Ddx23 protein_coding retained_intron MGP_C3HHeJ_T0040346.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9500978 9737731 - MGP_C3HHeJ_P0040346 Pdzd2 protein_coding protein_coding MGP_C3HHeJ_T0040347.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9541867 9544699 - Pdzd2 protein_coding retained_intron MGP_C3HHeJ_T0040348.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9548320 9555877 - Pdzd2 protein_coding retained_intron MGP_C3HHeJ_T0040349.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9550670 9693523 - MGP_C3HHeJ_P0040349 Pdzd2 protein_coding protein_coding MGP_C3HHeJ_T0040350.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9587282 9889666 - Pdzd2 protein_coding retained_intron MGP_C3HHeJ_T0040351.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9602062 9638811 - MGP_C3HHeJ_P0040351 Pdzd2 protein_coding protein_coding MGP_C3HHeJ_T0040352.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9602102 9694122 - MGP_C3HHeJ_P0040352 Pdzd2 protein_coding protein_coding MGP_C3HHeJ_T0040353.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9670809 9694030 - Pdzd2 protein_coding processed_transcript MGP_C3HHeJ_T0040354.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9688705 9693526 - Pdzd2 protein_coding retained_intron MGP_C3HHeJ_T0040355.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9693307 9694477 - Pdzd2 protein_coding retained_intron MGP_C3HHeJ_T0040356.1 MGP_C3HHeJ_G0021481.1 mouse_genomes_project 15 9733689 9744131 - Pdzd2 protein_coding processed_transcript MGP_C3HHeJ_T0011306.1 MGP_C3HHeJ_G0009439.1 mouse_genomes_project 15 104174046 104174221 + Gm28011 misc_RNA misc_RNA MGP_C3HHeJ_T0042001.1 MGP_C3HHeJ_G0021986.1 mouse_genomes_project 15 92458895 92667941 + Cntn1 protein_coding retained_intron MGP_C3HHeJ_T0042002.1 MGP_C3HHeJ_G0021986.1 mouse_genomes_project 15 92458895 92766746 + MGP_C3HHeJ_P0042002 Cntn1 protein_coding protein_coding MGP_C3HHeJ_T0042003.1 MGP_C3HHeJ_G0021986.1 mouse_genomes_project 15 92539082 92766733 + MGP_C3HHeJ_P0042003 Cntn1 protein_coding protein_coding MGP_C3HHeJ_T0042004.1 MGP_C3HHeJ_G0021986.1 mouse_genomes_project 15 92575530 92764896 + MGP_C3HHeJ_P0042004 Cntn1 protein_coding protein_coding MGP_C3HHeJ_T0012957.1 MGP_C3HHeJ_G0011061.1 mouse_genomes_project 15 80678987 80679382 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040548.1 MGP_C3HHeJ_G0021548.1 mouse_genomes_project 15 36371299 36378533 - MGP_C3HHeJ_P0040548 Klf10 protein_coding protein_coding MGP_C3HHeJ_T0040414.1 MGP_C3HHeJ_G0021504.1 mouse_genomes_project 15 29003115 29052807 + MGP_C3HHeJ_P0040414 Dap protein_coding protein_coding MGP_C3HHeJ_T0040415.1 MGP_C3HHeJ_G0021504.1 mouse_genomes_project 15 29003189 29053844 + MGP_C3HHeJ_P0040415 Dap protein_coding protein_coding MGP_C3HHeJ_T0040416.1 MGP_C3HHeJ_G0021504.1 mouse_genomes_project 15 29003220 29052962 + MGP_C3HHeJ_P0040416 Dap protein_coding protein_coding MGP_C3HHeJ_T0040417.1 MGP_C3HHeJ_G0021504.1 mouse_genomes_project 15 29047839 29052887 + MGP_C3HHeJ_P0040417 Dap protein_coding protein_coding MGP_C3HHeJ_T0040453.1 MGP_C3HHeJ_G0021518.1 mouse_genomes_project 15 32110501 32159786 + MGP_C3HHeJ_P0040453 Laptm4b protein_coding protein_coding MGP_C3HHeJ_T0042569.1 MGP_C3HHeJ_G0022179.1 mouse_genomes_project 15 104833190 104835507 - MGP_C3HHeJ_P0042569 Glycam1 protein_coding protein_coding MGP_C3HHeJ_T0006667.1 MGP_C3HHeJ_G0005501.1 mouse_genomes_project 15 30082091 30086193 - Snhg18 lincRNA lincRNA MGP_C3HHeJ_T0040709.1 MGP_C3HHeJ_G0021611.1 mouse_genomes_project 15 56739298 56778271 - MGP_C3HHeJ_P0040709 Fbxo32 protein_coding protein_coding MGP_C3HHeJ_T0040641.1 MGP_C3HHeJ_G0021590.1 mouse_genomes_project 15 53212772 53220958 + MGP_C3HHeJ_P0040641 Nov protein_coding protein_coding MGP_C3HHeJ_T0042169.1 MGP_C3HHeJ_G0022041.1 mouse_genomes_project 15 99530995 99536053 - MGP_C3HHeJ_P0042169 Fkbp11 protein_coding protein_coding MGP_C3HHeJ_T0042442.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103507881 103514367 + MGP_C3HHeJ_P0042442 Myg1 protein_coding protein_coding MGP_C3HHeJ_T0042443.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103507892 103508769 + Myg1 protein_coding retained_intron MGP_C3HHeJ_T0042444.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103507910 103514024 + Myg1 protein_coding retained_intron MGP_C3HHeJ_T0042445.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103507922 103514007 + MGP_C3HHeJ_P0042445 Myg1 protein_coding protein_coding MGP_C3HHeJ_T0042446.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103507927 103513919 + MGP_C3HHeJ_P0042446 Myg1 protein_coding protein_coding MGP_C3HHeJ_T0042447.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103508089 103513368 + Myg1 protein_coding retained_intron MGP_C3HHeJ_T0042448.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103508602 103513050 + Myg1 protein_coding processed_transcript MGP_C3HHeJ_T0042449.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103509812 103513074 + Myg1 protein_coding retained_intron MGP_C3HHeJ_T0042450.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103512943 103514024 + Myg1 protein_coding retained_intron MGP_C3HHeJ_T0042451.1 MGP_C3HHeJ_G0022142.1 mouse_genomes_project 15 103513205 103513963 + Myg1 protein_coding retained_intron MGP_C3HHeJ_T0041659.1 MGP_C3HHeJ_G0021885.1 mouse_genomes_project 15 82223183 82227535 - MGP_C3HHeJ_P0041659 Cyp2d10 protein_coding protein_coding MGP_C3HHeJ_T0000901.1 MGP_C3HHeJ_G0000841.1 mouse_genomes_project 15 3959167 3965639 + TEC TEC MGP_C3HHeJ_T0100272.1 MGP_C3HHeJ_G0038466.1 mouse_genomes_project 15 95219619 95219751 - Gm25546 snoRNA snoRNA MGP_C3HHeJ_T0042465.1 MGP_C3HHeJ_G0022147.1 mouse_genomes_project 15 103645495 103647057 + MGP_C3HHeJ_P0042465 Prr13 protein_coding protein_coding MGP_C3HHeJ_T0042466.1 MGP_C3HHeJ_G0022147.1 mouse_genomes_project 15 103645642 103649339 + MGP_C3HHeJ_P0042466 Prr13 protein_coding protein_coding MGP_C3HHeJ_T0042467.1 MGP_C3HHeJ_G0022147.1 mouse_genomes_project 15 103645669 103649315 + MGP_C3HHeJ_P0042467 Prr13 protein_coding protein_coding MGP_C3HHeJ_T0042468.1 MGP_C3HHeJ_G0022147.1 mouse_genomes_project 15 103645699 103649317 + MGP_C3HHeJ_P0042468 Prr13 protein_coding protein_coding MGP_C3HHeJ_T0042469.1 MGP_C3HHeJ_G0022147.1 mouse_genomes_project 15 103646551 103649309 + MGP_C3HHeJ_P0042469 Prr13 protein_coding protein_coding MGP_C3HHeJ_T0040248.1 MGP_C3HHeJ_G0021452.1 mouse_genomes_project 15 6030015 6091631 + MGP_C3HHeJ_P0040248 Ranbp3l protein_coding protein_coding MGP_C3HHeJ_T0040249.1 MGP_C3HHeJ_G0021452.1 mouse_genomes_project 15 6030015 6060020 + MGP_C3HHeJ_P0040249 Ranbp3l protein_coding protein_coding MGP_C3HHeJ_T0040250.1 MGP_C3HHeJ_G0021452.1 mouse_genomes_project 15 6030015 6090086 + MGP_C3HHeJ_P0040250 Ranbp3l protein_coding unknown_likely_coding MGP_C3HHeJ_T0040621.1 MGP_C3HHeJ_G0021579.1 mouse_genomes_project 15 50311339 50321249 + MGP_C3HHeJ_P0040621 Utp23 protein_coding protein_coding MGP_C3HHeJ_T0040622.1 MGP_C3HHeJ_G0021579.1 mouse_genomes_project 15 50311388 50318090 + MGP_C3HHeJ_P0040622 Utp23 protein_coding protein_coding MGP_C3HHeJ_T0040623.1 MGP_C3HHeJ_G0021579.1 mouse_genomes_project 15 50311415 50318085 + MGP_C3HHeJ_P0040623 Utp23 protein_coding protein_coding MGP_C3HHeJ_T0040624.1 MGP_C3HHeJ_G0021579.1 mouse_genomes_project 15 50311652 50318084 + MGP_C3HHeJ_P0040624 Utp23 protein_coding protein_coding MGP_C3HHeJ_T0000916.1 MGP_C3HHeJ_G0000856.1 mouse_genomes_project 15 104647778 104648115 + TEC TEC MGP_C3HHeJ_T0040384.1 MGP_C3HHeJ_G0021491.1 mouse_genomes_project 15 22991378 23044191 - MGP_C3HHeJ_P0040384 Basp1 protein_coding protein_coding MGP_C3HHeJ_T0041881.1 MGP_C3HHeJ_G0021955.1 mouse_genomes_project 15 89420406 89427531 - MGP_C3HHeJ_P0041881 Mapk11 protein_coding protein_coding MGP_C3HHeJ_T0000913.1 MGP_C3HHeJ_G0000853.1 mouse_genomes_project 15 92913039 92915929 + TEC TEC MGP_C3HHeJ_T0041982.1 MGP_C3HHeJ_G0021982.1 mouse_genomes_project 15 91547857 91621864 + MGP_C3HHeJ_P0041982 CN725425 protein_coding protein_coding MGP_C3HHeJ_T0041983.1 MGP_C3HHeJ_G0021982.1 mouse_genomes_project 15 91547939 91621864 + MGP_C3HHeJ_P0041983 CN725425 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041984.1 MGP_C3HHeJ_G0021982.1 mouse_genomes_project 15 91589580 91621855 + MGP_C3HHeJ_P0041984 CN725425 protein_coding protein_coding MGP_C3HHeJ_T0009996.1 MGP_C3HHeJ_G0008129.1 mouse_genomes_project 15 85773968 85774063 + Mirlet7c-2 miRNA miRNA MGP_C3HHeJ_T0006734.1 MGP_C3HHeJ_G0005546.1 mouse_genomes_project 15 104338567 104340886 - Gm28265 lincRNA lincRNA MGP_C3HHeJ_T0042187.1 MGP_C3HHeJ_G0022050.1 mouse_genomes_project 15 99723229 99738213 - MGP_C3HHeJ_P0042187 Lmbr1l protein_coding protein_coding MGP_C3HHeJ_T0042188.1 MGP_C3HHeJ_G0022050.1 mouse_genomes_project 15 99724967 99727732 - Lmbr1l protein_coding processed_transcript MGP_C3HHeJ_T0042189.1 MGP_C3HHeJ_G0022050.1 mouse_genomes_project 15 99725976 99728058 - Lmbr1l protein_coding retained_intron MGP_C3HHeJ_T0042190.1 MGP_C3HHeJ_G0022050.1 mouse_genomes_project 15 99726674 99728255 - Lmbr1l protein_coding retained_intron MGP_C3HHeJ_T0042191.1 MGP_C3HHeJ_G0022050.1 mouse_genomes_project 15 99732296 99738347 - Lmbr1l protein_coding processed_transcript MGP_C3HHeJ_T0042192.1 MGP_C3HHeJ_G0022050.1 mouse_genomes_project 15 99733970 99738042 - Lmbr1l protein_coding processed_transcript MGP_C3HHeJ_T0101756.1 MGP_C3HHeJ_G0039721.1 mouse_genomes_project 15 74483054 74485253 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100240.1 MGP_C3HHeJ_G0038434.1 mouse_genomes_project 15 27658917 27659051 - Gm23033 snoRNA snoRNA MGP_C3HHeJ_T0098053.1 MGP_C3HHeJ_G0036265.1 mouse_genomes_project 15 87325627 87325731 + n-R5s42 rRNA rRNA MGP_C3HHeJ_T0101764.1 MGP_C3HHeJ_G0039729.1 mouse_genomes_project 15 82678118 82682742 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0040369.1 MGP_C3HHeJ_G0021486.1 mouse_genomes_project 15 16257144 16454818 + MGP_C3HHeJ_P0040369 Cdh10 protein_coding protein_coding MGP_C3HHeJ_T0040370.1 MGP_C3HHeJ_G0021486.1 mouse_genomes_project 15 16257155 16338018 + Cdh10 protein_coding retained_intron MGP_C3HHeJ_T0040371.1 MGP_C3HHeJ_G0021486.1 mouse_genomes_project 15 16257174 16406654 + Cdh10 protein_coding retained_intron MGP_C3HHeJ_T0040372.1 MGP_C3HHeJ_G0021486.1 mouse_genomes_project 15 16258526 16454818 + MGP_C3HHeJ_P0040372 Cdh10 protein_coding protein_coding MGP_C3HHeJ_T0040373.1 MGP_C3HHeJ_G0021486.1 mouse_genomes_project 15 16334497 16454264 + MGP_C3HHeJ_P0040373 Cdh10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040374.1 MGP_C3HHeJ_G0021486.1 mouse_genomes_project 15 16447627 16454818 + Cdh10 protein_coding retained_intron MGP_C3HHeJ_T0012963.1 MGP_C3HHeJ_G0011067.1 mouse_genomes_project 15 90918505 90918988 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011301.1 MGP_C3HHeJ_G0009434.1 mouse_genomes_project 15 98640215 98640526 + Gm22202 misc_RNA misc_RNA MGP_C3HHeJ_T0040861.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72656923 72685696 - MGP_C3HHeJ_P0040861 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040862.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72656933 72705561 - MGP_C3HHeJ_P0040862 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040863.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72659799 72697539 - MGP_C3HHeJ_P0040863 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040864.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72659799 72685682 - MGP_C3HHeJ_P0040864 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040865.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72659802 72705561 - MGP_C3HHeJ_P0040865 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040866.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72666403 72668472 - MGP_C3HHeJ_P0040866 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040867.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72685807 72728517 - MGP_C3HHeJ_P0040867 Slc45a4 protein_coding protein_coding MGP_C3HHeJ_T0040868.1 MGP_C3HHeJ_G0021661.1 mouse_genomes_project 15 72686162 72727009 - Slc45a4 protein_coding processed_transcript MGP_C3HHeJ_T0041952.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89816914 89882676 + MGP_C3HHeJ_P0041952 Shank3 protein_coding protein_coding MGP_C3HHeJ_T0041953.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89817072 89882676 + MGP_C3HHeJ_P0041953 Shank3 protein_coding protein_coding MGP_C3HHeJ_T0041954.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89817338 89820637 + Shank3 protein_coding processed_transcript MGP_C3HHeJ_T0041955.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89818498 89882674 + MGP_C3HHeJ_P0041955 Shank3 protein_coding protein_coding MGP_C3HHeJ_T0041956.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89843596 89854896 + Shank3 protein_coding processed_transcript MGP_C3HHeJ_T0041957.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89851297 89852910 + Shank3 protein_coding processed_transcript MGP_C3HHeJ_T0041958.1 MGP_C3HHeJ_G0021974.1 mouse_genomes_project 15 89853391 89864929 + MGP_C3HHeJ_P0041958 Shank3 protein_coding protein_coding MGP_C3HHeJ_T0098980.1 MGP_C3HHeJ_G0037174.1 mouse_genomes_project 15 42543618 42543725 + Gm22392 snRNA snRNA MGP_C3HHeJ_T0040234.1 MGP_C3HHeJ_G0021449.1 mouse_genomes_project 15 5166074 5284624 + MGP_C3HHeJ_P0040234 protein_coding protein_coding MGP_C3HHeJ_T0040235.1 MGP_C3HHeJ_G0021449.1 mouse_genomes_project 15 5184838 5185693 + protein_coding retained_intron MGP_C3HHeJ_T0040236.1 MGP_C3HHeJ_G0021449.1 mouse_genomes_project 15 5196586 5205797 + protein_coding retained_intron MGP_C3HHeJ_T0040237.1 MGP_C3HHeJ_G0021449.1 mouse_genomes_project 15 5219518 5222232 + protein_coding retained_intron MGP_C3HHeJ_T0040238.1 MGP_C3HHeJ_G0021449.1 mouse_genomes_project 15 5225387 5252215 + MGP_C3HHeJ_P0040238 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040182.1 MGP_C3HHeJ_G0021436.1 mouse_genomes_project 15 2060379 2099224 + MGP_C3HHeJ_P0040182 Prkaa1 protein_coding protein_coding MGP_C3HHeJ_T0042308.1 MGP_C3HHeJ_G0022090.1 mouse_genomes_project 15 101525471 101584873 - MGP_C3HHeJ_P0042308 Tfcp2 protein_coding protein_coding MGP_C3HHeJ_T0098573.1 MGP_C3HHeJ_G0036771.1 mouse_genomes_project 15 57378389 57379885 - Gm20712 sense_overlapping sense_overlapping MGP_C3HHeJ_T0041487.1 MGP_C3HHeJ_G0021835.1 mouse_genomes_project 15 79954477 79956834 + MGP_C3HHeJ_P0041487 Atf4 protein_coding protein_coding MGP_C3HHeJ_T0006658.1 MGP_C3HHeJ_G0005496.1 mouse_genomes_project 15 7780750 7786581 + 4930556M19Rik lincRNA lincRNA MGP_C3HHeJ_T0042157.1 MGP_C3HHeJ_G0022037.1 mouse_genomes_project 15 99424210 99437532 + MGP_C3HHeJ_P0042157 Cacnb3 protein_coding protein_coding MGP_C3HHeJ_T0042158.1 MGP_C3HHeJ_G0022037.1 mouse_genomes_project 15 99426803 99437532 + MGP_C3HHeJ_P0042158 Cacnb3 protein_coding protein_coding MGP_C3HHeJ_T0041832.1 MGP_C3HHeJ_G0021943.1 mouse_genomes_project 15 89072376 89083262 - Alg12 protein_coding retained_intron MGP_C3HHeJ_T0041833.1 MGP_C3HHeJ_G0021943.1 mouse_genomes_project 15 89072376 89086432 - MGP_C3HHeJ_P0041833 Alg12 protein_coding protein_coding MGP_C3HHeJ_T0041834.1 MGP_C3HHeJ_G0021943.1 mouse_genomes_project 15 89072377 89086399 - MGP_C3HHeJ_P0041834 Alg12 protein_coding protein_coding MGP_C3HHeJ_T0041835.1 MGP_C3HHeJ_G0021943.1 mouse_genomes_project 15 89081698 89086206 - MGP_C3HHeJ_P0041835 Alg12 protein_coding protein_coding MGP_C3HHeJ_T0101758.1 MGP_C3HHeJ_G0039723.1 mouse_genomes_project 15 74534733 74537875 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0040517.1 MGP_C3HHeJ_G0021540.1 mouse_genomes_project 15 34874894 34884208 - MGP_C3HHeJ_P0040517 Gm10384 protein_coding protein_coding MGP_C3HHeJ_T0011300.1 MGP_C3HHeJ_G0009433.1 mouse_genomes_project 15 91996566 91996852 - Gm25389 misc_RNA misc_RNA MGP_C3HHeJ_T0003534.1 MGP_C3HHeJ_G0003206.1 mouse_genomes_project 15 65633865 65639134 - Gm17140 antisense antisense MGP_C3HHeJ_T0098054.1 MGP_C3HHeJ_G0036266.1 mouse_genomes_project 15 91931695 91931808 - Gm24647 rRNA rRNA MGP_C3HHeJ_T0098983.1 MGP_C3HHeJ_G0037177.1 mouse_genomes_project 15 46819878 46820011 + Gm25007 snRNA snRNA MGP_C3HHeJ_T0042154.1 MGP_C3HHeJ_G0022035.1 mouse_genomes_project 15 99360117 99379635 + MGP_C3HHeJ_P0042154 4930415O20Rik protein_coding protein_coding MGP_C3HHeJ_T0100258.1 MGP_C3HHeJ_G0038452.1 mouse_genomes_project 15 52068913 52069045 - Gm23200 snoRNA snoRNA MGP_C3HHeJ_T0040180.1 MGP_C3HHeJ_G0021434.1 mouse_genomes_project 15 2027302 2031167 + MGP_C3HHeJ_P0040180 Rpl37 protein_coding protein_coding MGP_C3HHeJ_T0040273.1 MGP_C3HHeJ_G0021458.1 mouse_genomes_project 15 6454104 6477776 + MGP_C3HHeJ_P0040273 Capsl protein_coding protein_coding MGP_C3HHeJ_T0041386.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78931985 78980950 - MGP_C3HHeJ_P0041386 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041387.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78931985 78980898 - MGP_C3HHeJ_P0041387 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041388.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78931985 78980925 - MGP_C3HHeJ_P0041388 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041389.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78931985 78980686 - MGP_C3HHeJ_P0041389 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041390.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78931989 78980975 - MGP_C3HHeJ_P0041390 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041391.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78934991 78955134 - Pla2g6 protein_coding retained_intron MGP_C3HHeJ_T0041392.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78953650 78957628 - Pla2g6 protein_coding retained_intron MGP_C3HHeJ_T0041393.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78957583 78960710 - Pla2g6 protein_coding retained_intron MGP_C3HHeJ_T0041394.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78960766 78981112 - MGP_C3HHeJ_P0041394 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041395.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78962879 78969068 - Pla2g6 protein_coding retained_intron MGP_C3HHeJ_T0041396.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78962947 78974634 - MGP_C3HHeJ_P0041396 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0041397.1 MGP_C3HHeJ_G0021809.1 mouse_genomes_project 15 78968926 78977212 - MGP_C3HHeJ_P0041397 Pla2g6 protein_coding protein_coding MGP_C3HHeJ_T0042194.1 MGP_C3HHeJ_G0022052.1 mouse_genomes_project 15 99894895 99898686 + MGP_C3HHeJ_P0042194 Prph protein_coding protein_coding MGP_C3HHeJ_T0042195.1 MGP_C3HHeJ_G0022052.1 mouse_genomes_project 15 99894895 99898686 + MGP_C3HHeJ_P0042195 Prph protein_coding protein_coding MGP_C3HHeJ_T0040493.1 MGP_C3HHeJ_G0021532.1 mouse_genomes_project 15 34121275 34136082 - MGP_C3HHeJ_P0040493 Fbxo43 protein_coding protein_coding MGP_C3HHeJ_T0040907.1 MGP_C3HHeJ_G0021675.1 mouse_genomes_project 15 73866553 73871739 - MGP_C3HHeJ_P0040907 Lynx1 protein_coding protein_coding MGP_C3HHeJ_T0040908.1 MGP_C3HHeJ_G0021675.1 mouse_genomes_project 15 73870296 73871707 - MGP_C3HHeJ_P0040908 Lynx1 protein_coding protein_coding MGP_C3HHeJ_T0040909.1 MGP_C3HHeJ_G0021675.1 mouse_genomes_project 15 73871011 73871717 - Lynx1 protein_coding retained_intron MGP_C3HHeJ_T0100255.1 MGP_C3HHeJ_G0038449.1 mouse_genomes_project 15 43067065 43067208 + Gm23343 snoRNA snoRNA MGP_C3HHeJ_T0012958.1 MGP_C3HHeJ_G0011062.1 mouse_genomes_project 15 81440349 81440973 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041035.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496911 75525603 - MGP_C3HHeJ_P0041035 Plec protein_coding protein_coding MGP_C3HHeJ_T0041036.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496916 75525778 - MGP_C3HHeJ_P0041036 Plec protein_coding protein_coding MGP_C3HHeJ_T0041037.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496916 75557386 - MGP_C3HHeJ_P0041037 Plec protein_coding protein_coding MGP_C3HHeJ_T0041038.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496916 75532264 - MGP_C3HHeJ_P0041038 Plec protein_coding protein_coding MGP_C3HHeJ_T0041039.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496916 75535108 - MGP_C3HHeJ_P0041039 Plec protein_coding protein_coding MGP_C3HHeJ_T0041040.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496917 75555505 - MGP_C3HHeJ_P0041040 Plec protein_coding protein_coding MGP_C3HHeJ_T0041041.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496918 75524152 - MGP_C3HHeJ_P0041041 Plec protein_coding protein_coding MGP_C3HHeJ_T0041042.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496918 75525778 - MGP_C3HHeJ_P0041042 Plec protein_coding protein_coding MGP_C3HHeJ_T0041043.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496918 75532265 - MGP_C3HHeJ_P0041043 Plec protein_coding protein_coding MGP_C3HHeJ_T0041044.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496918 75526550 - MGP_C3HHeJ_P0041044 Plec protein_coding protein_coding MGP_C3HHeJ_T0041045.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75496918 75521653 - MGP_C3HHeJ_P0041045 Plec protein_coding protein_coding MGP_C3HHeJ_T0041046.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75501322 75513986 - MGP_C3HHeJ_P0041046 Plec protein_coding protein_coding MGP_C3HHeJ_T0041047.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75512553 75532264 - MGP_C3HHeJ_P0041047 Plec protein_coding protein_coding MGP_C3HHeJ_T0041048.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75514406 75534196 - MGP_C3HHeJ_P0041048 Plec protein_coding protein_coding MGP_C3HHeJ_T0041049.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75514406 75525778 - MGP_C3HHeJ_P0041049 Plec protein_coding protein_coding MGP_C3HHeJ_T0041050.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75514406 75558053 - MGP_C3HHeJ_P0041050 Plec protein_coding protein_coding MGP_C3HHeJ_T0041051.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75514483 75558578 - MGP_C3HHeJ_P0041051 Plec protein_coding protein_coding MGP_C3HHeJ_T0041052.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75520335 75535108 - MGP_C3HHeJ_P0041052 Plec protein_coding protein_coding MGP_C3HHeJ_T0041053.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75520335 75526550 - MGP_C3HHeJ_P0041053 Plec protein_coding protein_coding MGP_C3HHeJ_T0041054.1 MGP_C3HHeJ_G0021716.1 mouse_genomes_project 15 75556742 75558582 - Plec protein_coding retained_intron MGP_C3HHeJ_T0040595.1 MGP_C3HHeJ_G0021571.1 mouse_genomes_project 15 42539132 42549336 + MGP_C3HHeJ_P0040595 Eny2 protein_coding protein_coding MGP_C3HHeJ_T0006670.1 MGP_C3HHeJ_G0005504.1 mouse_genomes_project 15 36313923 36316628 - Gm8705 lincRNA lincRNA MGP_C3HHeJ_T0006728.1 MGP_C3HHeJ_G0005541.1 mouse_genomes_project 15 102366333 102369737 + 6030408B16Rik lincRNA lincRNA MGP_C3HHeJ_T0006729.1 MGP_C3HHeJ_G0005541.1 mouse_genomes_project 15 102366353 102370542 + 6030408B16Rik lincRNA lincRNA MGP_C3HHeJ_T0042257.1 MGP_C3HHeJ_G0022070.1 mouse_genomes_project 15 100554411 100585869 + MGP_C3HHeJ_P0042257 Asic1 protein_coding protein_coding MGP_C3HHeJ_T0012947.1 MGP_C3HHeJ_G0011051.1 mouse_genomes_project 15 71955500 71955704 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041425.1 MGP_C3HHeJ_G0021820.1 mouse_genomes_project 15 79354213 79367839 - MGP_C3HHeJ_P0041425 Josd1 protein_coding protein_coding MGP_C3HHeJ_T0009972.1 MGP_C3HHeJ_G0008105.1 mouse_genomes_project 15 78521611 78521685 + Mir6955 miRNA miRNA MGP_C3HHeJ_T0042391.1 MGP_C3HHeJ_G0022116.1 mouse_genomes_project 15 102841619 102848539 - MGP_C3HHeJ_P0042391 Krt5 protein_coding protein_coding MGP_C3HHeJ_T0040941.1 MGP_C3HHeJ_G0021686.1 mouse_genomes_project 15 74450800 74456366 + MGP_C3HHeJ_P0040941 BC025446 protein_coding protein_coding MGP_C3HHeJ_T0040942.1 MGP_C3HHeJ_G0021686.1 mouse_genomes_project 15 74451020 74457063 + MGP_C3HHeJ_P0040942 BC025446 protein_coding protein_coding MGP_C3HHeJ_T0042496.1 MGP_C3HHeJ_G0022152.1 mouse_genomes_project 15 103713462 103714339 - MGP_C3HHeJ_P0042496 Npff protein_coding protein_coding MGP_C3HHeJ_T0042498.1 MGP_C3HHeJ_G0022152.1 mouse_genomes_project 15 103713469 103714566 - Npff protein_coding retained_intron MGP_C3HHeJ_T0040323.1 MGP_C3HHeJ_G0021473.1 mouse_genomes_project 15 8138405 8433041 + MGP_C3HHeJ_P0040323 Adamts12 protein_coding protein_coding MGP_C3HHeJ_T0010007.1 MGP_C3HHeJ_G0008140.1 mouse_genomes_project 15 101682225 101682292 - Mir6961 miRNA miRNA MGP_C3HHeJ_T0101766.1 MGP_C3HHeJ_G0039731.1 mouse_genomes_project 15 99272094 99272332 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0041499.1 MGP_C3HHeJ_G0021841.1 mouse_genomes_project 15 80429955 80666367 + MGP_C3HHeJ_P0041499 Tnrc6b protein_coding protein_coding MGP_C3HHeJ_T0041500.1 MGP_C3HHeJ_G0021841.1 mouse_genomes_project 15 80480527 80654837 + MGP_C3HHeJ_P0041500 Tnrc6b protein_coding unknown_likely_coding MGP_C3HHeJ_T0040281.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7217427 7378901 + Prlr protein_coding retained_intron MGP_C3HHeJ_T0040282.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7217603 7397857 + Prlr protein_coding processed_transcript MGP_C3HHeJ_T0040283.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7217835 7398127 + MGP_C3HHeJ_P0040283 Prlr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040284.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7217844 7386511 + MGP_C3HHeJ_P0040284 Prlr protein_coding protein_coding MGP_C3HHeJ_T0040285.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7217970 7370380 + Prlr protein_coding retained_intron MGP_C3HHeJ_T0040286.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7254846 7369668 + Prlr protein_coding processed_transcript MGP_C3HHeJ_T0040287.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7257336 7369734 + MGP_C3HHeJ_P0040287 Prlr protein_coding protein_coding MGP_C3HHeJ_T0040288.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7265309 7395353 + MGP_C3HHeJ_P0040288 Prlr protein_coding protein_coding MGP_C3HHeJ_T0040289.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7265309 7391557 + MGP_C3HHeJ_P0040289 Prlr protein_coding protein_coding MGP_C3HHeJ_T0040290.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7265309 7398751 + MGP_C3HHeJ_P0040290 Prlr protein_coding protein_coding MGP_C3HHeJ_T0040291.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7292644 7372882 + MGP_C3HHeJ_P0040291 Prlr protein_coding protein_coding MGP_C3HHeJ_T0040292.1 MGP_C3HHeJ_G0021461.1 mouse_genomes_project 15 7364494 7372864 + MGP_C3HHeJ_P0040292 Prlr protein_coding protein_coding MGP_C3HHeJ_T0012951.1 MGP_C3HHeJ_G0011055.1 mouse_genomes_project 15 75175876 75177286 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041484.1 MGP_C3HHeJ_G0021833.1 mouse_genomes_project 15 79871226 79914493 + MGP_C3HHeJ_P0041484 Mgat3 protein_coding protein_coding MGP_C3HHeJ_T0042470.1 MGP_C3HHeJ_G0022148.1 mouse_genomes_project 15 103657561 103687763 + MGP_C3HHeJ_P0042470 Pcbp2 protein_coding protein_coding MGP_C3HHeJ_T0042471.1 MGP_C3HHeJ_G0022148.1 mouse_genomes_project 15 103657561 103687763 + MGP_C3HHeJ_P0042471 Pcbp2 protein_coding protein_coding MGP_C3HHeJ_T0042472.1 MGP_C3HHeJ_G0022148.1 mouse_genomes_project 15 103657561 103687763 + MGP_C3HHeJ_P0042472 Pcbp2 protein_coding protein_coding MGP_C3HHeJ_T0041696.1 MGP_C3HHeJ_G0021895.1 mouse_genomes_project 15 83079781 83101483 - MGP_C3HHeJ_P0041696 Cyb5r3 protein_coding protein_coding MGP_C3HHeJ_T0041697.1 MGP_C3HHeJ_G0021895.1 mouse_genomes_project 15 83084317 83099397 - MGP_C3HHeJ_P0041697 Cyb5r3 protein_coding protein_coding MGP_C3HHeJ_T0041698.1 MGP_C3HHeJ_G0021895.1 mouse_genomes_project 15 83087638 83099068 - MGP_C3HHeJ_P0041698 Cyb5r3 protein_coding protein_coding MGP_C3HHeJ_T0042389.1 MGP_C3HHeJ_G0022114.1 mouse_genomes_project 15 102680170 102690732 - MGP_C3HHeJ_P0042389 Krt75 protein_coding protein_coding MGP_C3HHeJ_T0040149.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 162787 435102 - MGP_C3HHeJ_P0040149 Ghr protein_coding protein_coding MGP_C3HHeJ_T0040150.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 164036 432411 - MGP_C3HHeJ_P0040150 Ghr protein_coding protein_coding MGP_C3HHeJ_T0040151.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 172533 435060 - MGP_C3HHeJ_P0040151 Ghr protein_coding protein_coding MGP_C3HHeJ_T0040152.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 172547 321455 - MGP_C3HHeJ_P0040152 Ghr protein_coding protein_coding MGP_C3HHeJ_T0040153.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 178445 433165 - MGP_C3HHeJ_P0040153 Ghr protein_coding protein_coding MGP_C3HHeJ_T0040154.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 185912 435060 - Ghr protein_coding processed_transcript MGP_C3HHeJ_T0040155.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 190045 435084 - Ghr protein_coding retained_intron MGP_C3HHeJ_T0040156.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 191327 435083 - Ghr protein_coding processed_transcript MGP_C3HHeJ_T0040157.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 226703 435364 - Ghr protein_coding retained_intron MGP_C3HHeJ_T0040158.1 MGP_C3HHeJ_G0021425.1 mouse_genomes_project 15 393533 435059 - Ghr protein_coding processed_transcript MGP_C3HHeJ_T0041925.1 MGP_C3HHeJ_G0021965.1 mouse_genomes_project 15 89674677 89679776 - MGP_C3HHeJ_P0041925 Tymp protein_coding protein_coding MGP_C3HHeJ_T0041971.1 MGP_C3HHeJ_G0021977.1 mouse_genomes_project 15 90112591 90189211 - MGP_C3HHeJ_P0041971 Syt10 protein_coding protein_coding MGP_C3HHeJ_T0003552.1 MGP_C3HHeJ_G0003219.1 mouse_genomes_project 15 86296913 86298336 + Gm15569 antisense antisense MGP_C3HHeJ_T0041812.1 MGP_C3HHeJ_G0021935.1 mouse_genomes_project 15 85981165 86129990 - MGP_C3HHeJ_P0041812 Celsr1 protein_coding protein_coding MGP_C3HHeJ_T0041813.1 MGP_C3HHeJ_G0021935.1 mouse_genomes_project 15 85983107 86129983 - MGP_C3HHeJ_P0041813 Celsr1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040325.1 MGP_C3HHeJ_G0021475.1 mouse_genomes_project 15 8951125 9022707 - MGP_C3HHeJ_P0040325 Npr3 protein_coding protein_coding MGP_C3HHeJ_T0041601.1 MGP_C3HHeJ_G0021863.1 mouse_genomes_project 15 81698806 81709965 - MGP_C3HHeJ_P0041601 Polr3h protein_coding protein_coding MGP_C3HHeJ_T0040869.1 MGP_C3HHeJ_G0021662.1 mouse_genomes_project 15 72781813 72795713 - MGP_C3HHeJ_P0040869 Gpr20 protein_coding protein_coding MGP_C3HHeJ_T0006703.1 MGP_C3HHeJ_G0005525.1 mouse_genomes_project 15 82896690 82906006 - lincRNA lincRNA MGP_C3HHeJ_T0006704.1 MGP_C3HHeJ_G0005525.1 mouse_genomes_project 15 82896748 82905887 - lincRNA lincRNA MGP_C3HHeJ_T0006696.1 MGP_C3HHeJ_G0005518.1 mouse_genomes_project 15 74259719 74262595 - Gm28502 lincRNA lincRNA MGP_C3HHeJ_T0042536.1 MGP_C3HHeJ_G0022167.1 mouse_genomes_project 15 104432799 104488291 - MGP_C3HHeJ_P0042536 Cbx5 protein_coding protein_coding MGP_C3HHeJ_T0042537.1 MGP_C3HHeJ_G0022167.1 mouse_genomes_project 15 104437941 104456676 - MGP_C3HHeJ_P0042537 Cbx5 protein_coding protein_coding MGP_C3HHeJ_T0042538.1 MGP_C3HHeJ_G0022167.1 mouse_genomes_project 15 104440509 104456629 - MGP_C3HHeJ_P0042538 Cbx5 protein_coding protein_coding MGP_C3HHeJ_T0042539.1 MGP_C3HHeJ_G0022167.1 mouse_genomes_project 15 104454402 104456690 - MGP_C3HHeJ_P0042539 Cbx5 protein_coding protein_coding MGP_C3HHeJ_T0040722.1 MGP_C3HHeJ_G0021622.1 mouse_genomes_project 15 57547763 57693856 - MGP_C3HHeJ_P0040722 Mtss1 protein_coding protein_coding MGP_C3HHeJ_T0040723.1 MGP_C3HHeJ_G0021622.1 mouse_genomes_project 15 57549949 57580862 - MGP_C3HHeJ_P0040723 Mtss1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010016.1 MGP_C3HHeJ_G0008149.1 mouse_genomes_project 15 103870404 103870479 - Mir688 miRNA miRNA MGP_C3HHeJ_T0006724.1 MGP_C3HHeJ_G0005537.1 mouse_genomes_project 15 99813765 99817094 + 4930578M01Rik lincRNA lincRNA MGP_C3HHeJ_T0042201.1 MGP_C3HHeJ_G0022057.1 mouse_genomes_project 15 100074387 100102567 + MGP_C3HHeJ_P0042201 Kcnh3 protein_coding protein_coding MGP_C3HHeJ_T0042204.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100159193 100170099 + MGP_C3HHeJ_P0042204 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042205.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100159345 100181167 + Prpf40b protein_coding retained_intron MGP_C3HHeJ_T0042206.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100159347 100180263 + Prpf40b protein_coding retained_intron MGP_C3HHeJ_T0042207.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100159347 100180263 + Prpf40b protein_coding retained_intron MGP_C3HHeJ_T0042208.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100159350 100171211 + MGP_C3HHeJ_P0042208 Prpf40b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042209.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100159377 100181167 + MGP_C3HHeJ_P0042209 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042210.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100160038 100181159 + MGP_C3HHeJ_P0042210 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042211.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100167424 100180648 + MGP_C3HHeJ_P0042211 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042212.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100167425 100181156 + MGP_C3HHeJ_P0042212 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042213.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100172018 100179225 + Prpf40b protein_coding retained_intron MGP_C3HHeJ_T0042214.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100174038 100180038 + Prpf40b protein_coding retained_intron MGP_C3HHeJ_T0042215.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100178999 100179942 + Prpf40b protein_coding retained_intron MGP_C3HHeJ_T0042216.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100179008 100180820 + MGP_C3HHeJ_P0042216 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042217.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100179037 100180962 + MGP_C3HHeJ_P0042217 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0042218.1 MGP_C3HHeJ_G0022060.1 mouse_genomes_project 15 100179671 100181159 + MGP_C3HHeJ_P0042218 Prpf40b protein_coding protein_coding MGP_C3HHeJ_T0012929.1 MGP_C3HHeJ_G0011033.1 mouse_genomes_project 15 35367486 35368164 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041403.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79079017 79102016 - MGP_C3HHeJ_P0041403 Csnk1e protein_coding unknown_likely_coding MGP_C3HHeJ_T0041404.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79080307 79082480 - Csnk1e protein_coding retained_intron MGP_C3HHeJ_T0041405.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79083651 79102953 - MGP_C3HHeJ_P0041405 Csnk1e protein_coding protein_coding MGP_C3HHeJ_T0041406.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79084813 79085469 - Csnk1e protein_coding retained_intron MGP_C3HHeJ_T0041407.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79085335 79086729 - Csnk1e protein_coding retained_intron MGP_C3HHeJ_T0041408.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79085907 79087614 - Csnk1e protein_coding retained_intron MGP_C3HHeJ_T0041409.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79086025 79091030 - Csnk1e protein_coding retained_intron MGP_C3HHeJ_T0041410.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79087568 79100155 - MGP_C3HHeJ_P0041410 Csnk1e protein_coding protein_coding MGP_C3HHeJ_T0041411.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79087637 79102953 - MGP_C3HHeJ_P0041411 Csnk1e protein_coding protein_coding MGP_C3HHeJ_T0041412.1 MGP_C3HHeJ_G0021812.1 mouse_genomes_project 15 79091208 79105044 - MGP_C3HHeJ_P0041412 Csnk1e protein_coding protein_coding MGP_C3HHeJ_T0041646.1 MGP_C3HHeJ_G0021879.1 mouse_genomes_project 15 82145776 82157132 - MGP_C3HHeJ_P0041646 Naga protein_coding protein_coding MGP_C3HHeJ_T0040943.1 MGP_C3HHeJ_G0021687.1 mouse_genomes_project 15 74508614 74512416 + MGP_C3HHeJ_P0040943 Ly6f protein_coding protein_coding MGP_C3HHeJ_T0040944.1 MGP_C3HHeJ_G0021687.1 mouse_genomes_project 15 74508614 74512692 + MGP_C3HHeJ_P0040944 Ly6f protein_coding protein_coding MGP_C3HHeJ_T0041904.1 MGP_C3HHeJ_G0021960.1 mouse_genomes_project 15 89619524 89621281 + MGP_C3HHeJ_P0041904 Adm2 protein_coding protein_coding MGP_C3HHeJ_T0040510.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34770609 34795953 - MGP_C3HHeJ_P0040510 Ywhaz protein_coding protein_coding MGP_C3HHeJ_T0040511.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34774161 34795252 - MGP_C3HHeJ_P0040511 Ywhaz protein_coding protein_coding MGP_C3HHeJ_T0040512.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34774161 34795946 - MGP_C3HHeJ_P0040512 Ywhaz protein_coding protein_coding MGP_C3HHeJ_T0040513.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34776541 34794934 - Ywhaz protein_coding retained_intron MGP_C3HHeJ_T0040514.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34792126 34793829 - MGP_C3HHeJ_P0040514 Ywhaz protein_coding protein_coding MGP_C3HHeJ_T0040515.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34792258 34794625 - MGP_C3HHeJ_P0040515 Ywhaz protein_coding protein_coding MGP_C3HHeJ_T0040516.1 MGP_C3HHeJ_G0021539.1 mouse_genomes_project 15 34792313 34795962 - MGP_C3HHeJ_P0040516 Ywhaz protein_coding protein_coding MGP_C3HHeJ_T0041948.1 MGP_C3HHeJ_G0021973.1 mouse_genomes_project 15 89787621 89792571 - MGP_C3HHeJ_P0041948 Arsa protein_coding protein_coding MGP_C3HHeJ_T0041949.1 MGP_C3HHeJ_G0021973.1 mouse_genomes_project 15 89787673 89791259 - Arsa protein_coding retained_intron MGP_C3HHeJ_T0041950.1 MGP_C3HHeJ_G0021973.1 mouse_genomes_project 15 89788385 89789417 - MGP_C3HHeJ_P0041950 Arsa protein_coding protein_coding MGP_C3HHeJ_T0041951.1 MGP_C3HHeJ_G0021973.1 mouse_genomes_project 15 89791376 89792557 - Arsa protein_coding processed_transcript MGP_C3HHeJ_T0041272.1 MGP_C3HHeJ_G0021774.1 mouse_genomes_project 15 77580786 77707198 - MGP_C3HHeJ_P0041272 Cacng2 protein_coding protein_coding MGP_C3HHeJ_T0040967.1 MGP_C3HHeJ_G0021694.1 mouse_genomes_project 15 74923257 74931915 + MGP_C3HHeJ_P0040967 Zfp41 protein_coding protein_coding MGP_C3HHeJ_T0040968.1 MGP_C3HHeJ_G0021694.1 mouse_genomes_project 15 74923262 74931908 + MGP_C3HHeJ_P0040968 Zfp41 protein_coding protein_coding MGP_C3HHeJ_T0040969.1 MGP_C3HHeJ_G0021694.1 mouse_genomes_project 15 74923304 74925259 + MGP_C3HHeJ_P0040969 Zfp41 protein_coding protein_coding MGP_C3HHeJ_T0040970.1 MGP_C3HHeJ_G0021694.1 mouse_genomes_project 15 74928325 74930445 + Zfp41 protein_coding processed_transcript MGP_C3HHeJ_T0000912.1 MGP_C3HHeJ_G0000852.1 mouse_genomes_project 15 85720491 85723855 + TEC TEC MGP_C3HHeJ_T0017259.1 MGP_C3HHeJ_G0015071.1 mouse_genomes_project 15 92291116 92315525 + processed_transcript processed_transcript MGP_C3HHeJ_T0017260.1 MGP_C3HHeJ_G0015071.1 mouse_genomes_project 15 92298855 92328048 + processed_transcript processed_transcript MGP_C3HHeJ_T0042403.1 MGP_C3HHeJ_G0022126.1 mouse_genomes_project 15 103071806 103082773 - MGP_C3HHeJ_P0042403 Krt79 protein_coding protein_coding MGP_C3HHeJ_T0017245.1 MGP_C3HHeJ_G0015063.1 mouse_genomes_project 15 76765130 76765808 - Gm20688 processed_transcript processed_transcript MGP_C3HHeJ_T0009942.1 MGP_C3HHeJ_G0008075.1 mouse_genomes_project 15 9303110 9303193 + Mir1898 miRNA miRNA MGP_C3HHeJ_T0040313.1 MGP_C3HHeJ_G0021467.1 mouse_genomes_project 15 7554337 7585710 - MGP_C3HHeJ_P0040313 Ttc23l protein_coding protein_coding MGP_C3HHeJ_T0040314.1 MGP_C3HHeJ_G0021467.1 mouse_genomes_project 15 7558182 7614515 - MGP_C3HHeJ_P0040314 Ttc23l protein_coding protein_coding MGP_C3HHeJ_T0040315.1 MGP_C3HHeJ_G0021467.1 mouse_genomes_project 15 7593496 7614497 - MGP_C3HHeJ_P0040315 Ttc23l protein_coding protein_coding MGP_C3HHeJ_T0041538.1 MGP_C3HHeJ_G0021848.1 mouse_genomes_project 15 81101557 81138516 - MGP_C3HHeJ_P0041538 St13 protein_coding protein_coding MGP_C3HHeJ_T0041539.1 MGP_C3HHeJ_G0021848.1 mouse_genomes_project 15 81103334 81138067 - MGP_C3HHeJ_P0041539 St13 protein_coding protein_coding MGP_C3HHeJ_T0041540.1 MGP_C3HHeJ_G0021848.1 mouse_genomes_project 15 81115647 81137856 - MGP_C3HHeJ_P0041540 St13 protein_coding protein_coding MGP_C3HHeJ_T0041541.1 MGP_C3HHeJ_G0021848.1 mouse_genomes_project 15 81128123 81138550 - MGP_C3HHeJ_P0041541 St13 protein_coding protein_coding MGP_C3HHeJ_T0041542.1 MGP_C3HHeJ_G0021848.1 mouse_genomes_project 15 81130743 81138546 - MGP_C3HHeJ_P0041542 St13 protein_coding protein_coding MGP_C3HHeJ_T0017234.1 MGP_C3HHeJ_G0015057.1 mouse_genomes_project 15 59475512 59481878 + 9930014A18Rik processed_transcript antisense MGP_C3HHeJ_T0017235.1 MGP_C3HHeJ_G0015057.1 mouse_genomes_project 15 59476193 59478850 + 9930014A18Rik processed_transcript TEC MGP_C3HHeJ_T0017236.1 MGP_C3HHeJ_G0015057.1 mouse_genomes_project 15 59476642 59477180 + 9930014A18Rik processed_transcript antisense MGP_C3HHeJ_T0017237.1 MGP_C3HHeJ_G0015057.1 mouse_genomes_project 15 59477581 59486006 + 9930014A18Rik processed_transcript antisense MGP_C3HHeJ_T0098052.1 MGP_C3HHeJ_G0036264.1 mouse_genomes_project 15 82160954 82161073 + n-R5s41 rRNA rRNA MGP_C3HHeJ_T0040545.1 MGP_C3HHeJ_G0021546.1 mouse_genomes_project 15 36027571 36140216 - MGP_C3HHeJ_P0040545 Ubr5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040546.1 MGP_C3HHeJ_G0021546.1 mouse_genomes_project 15 36027573 36140644 - MGP_C3HHeJ_P0040546 Ubr5 protein_coding protein_coding MGP_C3HHeJ_T0040321.1 MGP_C3HHeJ_G0021471.1 mouse_genomes_project 15 8079613 8108106 + MGP_C3HHeJ_P0040321 Slc45a2 protein_coding protein_coding MGP_C3HHeJ_T0003536.1 MGP_C3HHeJ_G0003208.1 mouse_genomes_project 15 70815013 70818688 + Gm16308 antisense antisense MGP_C3HHeJ_T0006677.1 MGP_C3HHeJ_G0005511.1 mouse_genomes_project 15 41517834 41560505 - Gm10373 lincRNA lincRNA MGP_C3HHeJ_T0006668.1 MGP_C3HHeJ_G0005502.1 mouse_genomes_project 15 35022488 35061831 + Gm26766 lincRNA lincRNA MGP_C3HHeJ_T0006663.1 MGP_C3HHeJ_G0005498.1 mouse_genomes_project 15 15488374 15578744 - 4921515E04Rik lincRNA lincRNA MGP_C3HHeJ_T0010015.1 MGP_C3HHeJ_G0008148.1 mouse_genomes_project 15 103031642 103031753 + Gm44356 miRNA miRNA MGP_C3HHeJ_T0042476.1 MGP_C3HHeJ_G0022150.1 mouse_genomes_project 15 103691427 103691592 + MGP_C3HHeJ_P0042476 Gm10337 protein_coding protein_coding MGP_C3HHeJ_T0101504.1 MGP_C3HHeJ_G0039493.1 mouse_genomes_project 15 74948743 74954106 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101505.1 MGP_C3HHeJ_G0039493.1 mouse_genomes_project 15 74949089 74951094 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101506.1 MGP_C3HHeJ_G0039493.1 mouse_genomes_project 15 74949098 74960324 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101507.1 MGP_C3HHeJ_G0039493.1 mouse_genomes_project 15 74950100 74953636 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0101508.1 MGP_C3HHeJ_G0039493.1 mouse_genomes_project 15 74951113 74953401 + unitary_pseudogene retained_intron MGP_C3HHeJ_T0101509.1 MGP_C3HHeJ_G0039493.1 mouse_genomes_project 15 74951277 74953154 + unitary_pseudogene processed_transcript MGP_C3HHeJ_T0003560.1 MGP_C3HHeJ_G0003225.1 mouse_genomes_project 15 99380036 99381135 + Gm29331 antisense antisense MGP_C3HHeJ_T0009991.1 MGP_C3HHeJ_G0008124.1 mouse_genomes_project 15 82682713 82682773 - Gm27618 miRNA miRNA MGP_C3HHeJ_T0040679.1 MGP_C3HHeJ_G0021602.1 mouse_genomes_project 15 56235598 56393744 + MGP_C3HHeJ_P0040679 Zhx2 protein_coding protein_coding MGP_C3HHeJ_T0040680.1 MGP_C3HHeJ_G0021602.1 mouse_genomes_project 15 56236661 56371324 + Zhx2 protein_coding processed_transcript MGP_C3HHeJ_T0040798.1 MGP_C3HHeJ_G0021643.1 mouse_genomes_project 15 65258710 65384980 - MGP_C3HHeJ_P0040798 Lrrc6 protein_coding protein_coding MGP_C3HHeJ_T0042025.1 MGP_C3HHeJ_G0021993.1 mouse_genomes_project 15 94802992 94927384 - MGP_C3HHeJ_P0042025 Adamts20 protein_coding protein_coding MGP_C3HHeJ_T0042026.1 MGP_C3HHeJ_G0021993.1 mouse_genomes_project 15 94846722 94927384 - MGP_C3HHeJ_P0042026 Adamts20 protein_coding protein_coding MGP_C3HHeJ_T0042027.1 MGP_C3HHeJ_G0021993.1 mouse_genomes_project 15 94880034 94927476 - Adamts20 protein_coding retained_intron MGP_C3HHeJ_T0042028.1 MGP_C3HHeJ_G0021993.1 mouse_genomes_project 15 94917859 94995069 - Adamts20 protein_coding processed_transcript MGP_C3HHeJ_T0006656.1 MGP_C3HHeJ_G0005494.1 mouse_genomes_project 15 882912 906292 + Gm2093 lincRNA lincRNA MGP_C3HHeJ_T0040599.1 MGP_C3HHeJ_G0021574.1 mouse_genomes_project 15 42788285 42910793 - MGP_C3HHeJ_P0040599 Sybu protein_coding protein_coding MGP_C3HHeJ_T0040600.1 MGP_C3HHeJ_G0021574.1 mouse_genomes_project 15 42788285 42910793 - MGP_C3HHeJ_P0040600 Sybu protein_coding protein_coding MGP_C3HHeJ_T0040601.1 MGP_C3HHeJ_G0021574.1 mouse_genomes_project 15 42788285 42871591 - MGP_C3HHeJ_P0040601 Sybu protein_coding protein_coding MGP_C3HHeJ_T0040693.1 MGP_C3HHeJ_G0021606.1 mouse_genomes_project 15 56582984 56595041 - MGP_C3HHeJ_P0040693 9130401M01Rik protein_coding protein_coding MGP_C3HHeJ_T0040694.1 MGP_C3HHeJ_G0021606.1 mouse_genomes_project 15 56582995 56588621 - 9130401M01Rik protein_coding processed_transcript MGP_C3HHeJ_T0040696.1 MGP_C3HHeJ_G0021606.1 mouse_genomes_project 15 56589537 56594916 - MGP_C3HHeJ_P0040696 9130401M01Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040697.1 MGP_C3HHeJ_G0021606.1 mouse_genomes_project 15 56591681 56595051 - MGP_C3HHeJ_P0040697 9130401M01Rik protein_coding protein_coding MGP_C3HHeJ_T0100243.1 MGP_C3HHeJ_G0038437.1 mouse_genomes_project 15 27827806 27827984 - Gm26163 snoRNA snoRNA MGP_C3HHeJ_T0012968.1 MGP_C3HHeJ_G0011072.1 mouse_genomes_project 15 100102883 100110760 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040897.1 MGP_C3HHeJ_G0021668.1 mouse_genomes_project 15 73785855 73789341 - MGP_C3HHeJ_P0040897 Arc protein_coding protein_coding MGP_C3HHeJ_T0040898.1 MGP_C3HHeJ_G0021668.1 mouse_genomes_project 15 73785855 73789343 - MGP_C3HHeJ_P0040898 Arc protein_coding protein_coding MGP_C3HHeJ_T0040589.1 MGP_C3HHeJ_G0021567.1 mouse_genomes_project 15 41560697 41615015 + MGP_C3HHeJ_P0040589 Emc2 protein_coding protein_coding MGP_C3HHeJ_T0041189.1 MGP_C3HHeJ_G0021746.1 mouse_genomes_project 15 76039924 76042844 + MGP_C3HHeJ_P0041189 Gpt protein_coding protein_coding MGP_C3HHeJ_T0041628.1 MGP_C3HHeJ_G0021868.1 mouse_genomes_project 15 81829683 81834186 - MGP_C3HHeJ_P0041628 protein_coding protein_coding MGP_C3HHeJ_T0041824.1 MGP_C3HHeJ_G0021940.1 mouse_genomes_project 15 88832498 88833866 + MGP_C3HHeJ_P0041824 Zdhhc25 protein_coding protein_coding MGP_C3HHeJ_T0003522.1 MGP_C3HHeJ_G0003196.1 mouse_genomes_project 15 3254596 3261270 - Gm16311 antisense antisense MGP_C3HHeJ_T0042556.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672734 104691619 - MGP_C3HHeJ_P0042556 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042557.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672785 104689755 - MGP_C3HHeJ_P0042557 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042558.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672785 104689649 - MGP_C3HHeJ_P0042558 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042559.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672788 104690711 - MGP_C3HHeJ_P0042559 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042560.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672810 104691498 - MGP_C3HHeJ_P0042560 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042561.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672822 104691493 - MGP_C3HHeJ_P0042561 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042562.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104672841 104691528 - MGP_C3HHeJ_P0042562 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042563.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104678742 104691558 - MGP_C3HHeJ_P0042563 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0042564.1 MGP_C3HHeJ_G0022174.1 mouse_genomes_project 15 104681143 104691393 - MGP_C3HHeJ_P0042564 Gtsf1 protein_coding protein_coding MGP_C3HHeJ_T0100251.1 MGP_C3HHeJ_G0038445.1 mouse_genomes_project 15 37014757 37014888 + Gm24789 snoRNA snoRNA MGP_C3HHeJ_T0042291.1 MGP_C3HHeJ_G0022082.1 mouse_genomes_project 15 101259520 101303256 + MGP_C3HHeJ_P0042291 Mettl7a2 protein_coding protein_coding MGP_C3HHeJ_T0041352.1 MGP_C3HHeJ_G0021802.1 mouse_genomes_project 15 78750420 78778310 + MGP_C3HHeJ_P0041352 Micall1 protein_coding protein_coding MGP_C3HHeJ_T0099015.1 MGP_C3HHeJ_G0037209.1 mouse_genomes_project 15 100232149 100232256 - Gm22951 snRNA snRNA MGP_C3HHeJ_T0098047.1 MGP_C3HHeJ_G0036259.1 mouse_genomes_project 15 10145792 10145892 + Gm24664 rRNA rRNA MGP_C3HHeJ_T0041341.1 MGP_C3HHeJ_G0021799.1 mouse_genomes_project 15 78668145 78676525 + MGP_C3HHeJ_P0041341 Gcat protein_coding protein_coding MGP_C3HHeJ_T0041342.1 MGP_C3HHeJ_G0021799.1 mouse_genomes_project 15 78668145 78680706 + MGP_C3HHeJ_P0041342 Gcat protein_coding protein_coding MGP_C3HHeJ_T0041343.1 MGP_C3HHeJ_G0021799.1 mouse_genomes_project 15 78680059 78681733 + MGP_C3HHeJ_P0041343 Gcat protein_coding protein_coding MGP_C3HHeJ_T0040837.1 MGP_C3HHeJ_G0021652.1 mouse_genomes_project 15 67850503 68007130 + MGP_C3HHeJ_P0040837 Khdrbs3 protein_coding protein_coding MGP_C3HHeJ_T0101357.1 MGP_C3HHeJ_G0039427.1 mouse_genomes_project 15 62619878 62671733 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101360.1 MGP_C3HHeJ_G0039427.1 mouse_genomes_project 15 62623922 62636124 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0042452.1 MGP_C3HHeJ_G0022143.1 mouse_genomes_project 15 103514474 103526993 - MGP_C3HHeJ_P0042452 Aaas protein_coding protein_coding MGP_C3HHeJ_T0011298.1 MGP_C3HHeJ_G0009431.1 mouse_genomes_project 15 77974272 77974382 + Gm26329 misc_RNA misc_RNA MGP_C3HHeJ_T0042233.1 MGP_C3HHeJ_G0022063.1 mouse_genomes_project 15 100291534 100304773 - MGP_C3HHeJ_P0042233 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042234.1 MGP_C3HHeJ_G0022063.1 mouse_genomes_project 15 100292450 100293374 - MGP_C3HHeJ_P0042234 protein_coding protein_coding MGP_C3HHeJ_T0042235.1 MGP_C3HHeJ_G0022063.1 mouse_genomes_project 15 100292850 100293370 - protein_coding processed_transcript MGP_C3HHeJ_T0042236.1 MGP_C3HHeJ_G0022063.1 mouse_genomes_project 15 100298079 100328205 - MGP_C3HHeJ_P0042236 protein_coding protein_coding MGP_C3HHeJ_T0042047.1 MGP_C3HHeJ_G0022002.1 mouse_genomes_project 15 96417226 96423499 - MGP_C3HHeJ_P0042047 Gm17546 protein_coding protein_coding MGP_C3HHeJ_T0041224.1 MGP_C3HHeJ_G0021758.1 mouse_genomes_project 15 76367892 76375188 - MGP_C3HHeJ_P0041224 Mb protein_coding protein_coding MGP_C3HHeJ_T0041225.1 MGP_C3HHeJ_G0021758.1 mouse_genomes_project 15 76367892 76406524 - MGP_C3HHeJ_P0041225 Mb protein_coding protein_coding MGP_C3HHeJ_T0041226.1 MGP_C3HHeJ_G0021758.1 mouse_genomes_project 15 76367892 76375128 - MGP_C3HHeJ_P0041226 Mb protein_coding protein_coding MGP_C3HHeJ_T0041249.1 MGP_C3HHeJ_G0021768.1 mouse_genomes_project 15 77265682 77295636 + MGP_C3HHeJ_P0041249 protein_coding protein_coding MGP_C3HHeJ_T0040574.1 MGP_C3HHeJ_G0021559.1 mouse_genomes_project 15 37854180 37933609 - MGP_C3HHeJ_P0040574 Lrp12 protein_coding protein_coding MGP_C3HHeJ_T0040575.1 MGP_C3HHeJ_G0021559.1 mouse_genomes_project 15 37854180 37933403 - MGP_C3HHeJ_P0040575 Lrp12 protein_coding protein_coding MGP_C3HHeJ_T0040576.1 MGP_C3HHeJ_G0021559.1 mouse_genomes_project 15 37892831 37933318 - Lrp12 protein_coding retained_intron MGP_C3HHeJ_T0041853.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89350756 89360941 + MGP_C3HHeJ_P0041853 Trabd protein_coding protein_coding MGP_C3HHeJ_T0041854.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89351645 89362709 + MGP_C3HHeJ_P0041854 Trabd protein_coding protein_coding MGP_C3HHeJ_T0041855.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89351704 89362703 + MGP_C3HHeJ_P0041855 Trabd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041856.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89351726 89361762 + MGP_C3HHeJ_P0041856 Trabd protein_coding protein_coding MGP_C3HHeJ_T0041857.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89351756 89361765 + MGP_C3HHeJ_P0041857 Trabd protein_coding protein_coding MGP_C3HHeJ_T0041858.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89358160 89362703 + Trabd protein_coding retained_intron MGP_C3HHeJ_T0041859.1 MGP_C3HHeJ_G0021950.1 mouse_genomes_project 15 89360340 89361256 + Trabd protein_coding retained_intron MGP_C3HHeJ_T0012952.1 MGP_C3HHeJ_G0011056.1 mouse_genomes_project 15 75287836 75289112 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040962.1 MGP_C3HHeJ_G0021693.1 mouse_genomes_project 15 74903432 74905018 + MGP_C3HHeJ_P0040962 Gpihbp1 protein_coding protein_coding MGP_C3HHeJ_T0040963.1 MGP_C3HHeJ_G0021693.1 mouse_genomes_project 15 74903434 74905018 + MGP_C3HHeJ_P0040963 Gpihbp1 protein_coding protein_coding MGP_C3HHeJ_T0040964.1 MGP_C3HHeJ_G0021693.1 mouse_genomes_project 15 74903458 74906286 + MGP_C3HHeJ_P0040964 Gpihbp1 protein_coding protein_coding MGP_C3HHeJ_T0040965.1 MGP_C3HHeJ_G0021693.1 mouse_genomes_project 15 74903472 74904993 + Gpihbp1 protein_coding retained_intron MGP_C3HHeJ_T0040966.1 MGP_C3HHeJ_G0021693.1 mouse_genomes_project 15 74903472 74904749 + Gpihbp1 protein_coding retained_intron MGP_C3HHeJ_T0042410.1 MGP_C3HHeJ_G0022132.1 mouse_genomes_project 15 103278313 103300093 - Spryd3 protein_coding retained_intron MGP_C3HHeJ_T0042411.1 MGP_C3HHeJ_G0022132.1 mouse_genomes_project 15 103278313 103300135 - MGP_C3HHeJ_P0042411 Spryd3 protein_coding protein_coding MGP_C3HHeJ_T0042412.1 MGP_C3HHeJ_G0022132.1 mouse_genomes_project 15 103280045 103289288 - Spryd3 protein_coding processed_transcript MGP_C3HHeJ_T0042413.1 MGP_C3HHeJ_G0022132.1 mouse_genomes_project 15 103290620 103291311 - Spryd3 protein_coding retained_intron MGP_C3HHeJ_T0040409.1 MGP_C3HHeJ_G0021500.1 mouse_genomes_project 15 25373102 25399571 - MGP_C3HHeJ_P0040409 Fam105a protein_coding protein_coding MGP_C3HHeJ_T0040410.1 MGP_C3HHeJ_G0021500.1 mouse_genomes_project 15 25374929 25399480 - MGP_C3HHeJ_P0040410 Fam105a protein_coding unknown_likely_coding MGP_C3HHeJ_T0042393.1 MGP_C3HHeJ_G0022118.1 mouse_genomes_project 15 102891256 102900474 - MGP_C3HHeJ_P0042393 Krt74 protein_coding protein_coding MGP_C3HHeJ_T0010006.1 MGP_C3HHeJ_G0008139.1 mouse_genomes_project 15 99922164 99922225 + Mir6960 miRNA miRNA MGP_C3HHeJ_T0009966.1 MGP_C3HHeJ_G0008099.1 mouse_genomes_project 15 75390320 75390381 - Mir6952 miRNA miRNA MGP_C3HHeJ_T0000910.1 MGP_C3HHeJ_G0000850.1 mouse_genomes_project 15 67233788 67238785 - TEC TEC MGP_C3HHeJ_T0006685.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60750690 60976097 + lincRNA lincRNA MGP_C3HHeJ_T0006686.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60750742 60985731 + lincRNA lincRNA MGP_C3HHeJ_T0006687.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60750751 60976093 + lincRNA lincRNA MGP_C3HHeJ_T0006688.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60750754 61106270 + lincRNA lincRNA MGP_C3HHeJ_T0006689.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60750765 60977547 + lincRNA lincRNA MGP_C3HHeJ_T0006690.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60751961 60975792 + lincRNA lincRNA MGP_C3HHeJ_T0006691.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60815495 60825263 + lincRNA lincRNA MGP_C3HHeJ_T0006692.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60902776 60977549 + lincRNA lincRNA MGP_C3HHeJ_T0006693.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60946970 60976095 + lincRNA lincRNA MGP_C3HHeJ_T0006694.1 MGP_C3HHeJ_G0005516.1 mouse_genomes_project 15 60951352 60969017 + lincRNA lincRNA MGP_C3HHeJ_T0003550.1 MGP_C3HHeJ_G0003217.1 mouse_genomes_project 15 83024198 83028044 - Gm17206 antisense antisense MGP_C3HHeJ_T0041703.1 MGP_C3HHeJ_G0021898.1 mouse_genomes_project 15 83313353 83372108 - MGP_C3HHeJ_P0041703 Pacsin2 protein_coding protein_coding MGP_C3HHeJ_T0041704.1 MGP_C3HHeJ_G0021898.1 mouse_genomes_project 15 83313353 83404642 - MGP_C3HHeJ_P0041704 Pacsin2 protein_coding protein_coding MGP_C3HHeJ_T0041705.1 MGP_C3HHeJ_G0021898.1 mouse_genomes_project 15 83313868 83404606 - MGP_C3HHeJ_P0041705 Pacsin2 protein_coding protein_coding MGP_C3HHeJ_T0000915.1 MGP_C3HHeJ_G0000855.1 mouse_genomes_project 15 104287885 104288912 - TEC TEC MGP_C3HHeJ_T0041489.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 79989532 80105949 + MGP_C3HHeJ_P0041489 Cacna1i protein_coding protein_coding MGP_C3HHeJ_T0041490.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 79989787 80103432 + MGP_C3HHeJ_P0041490 Cacna1i protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041491.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 79989851 80105959 + MGP_C3HHeJ_P0041491 Cacna1i protein_coding unknown_likely_coding MGP_C3HHeJ_T0041492.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 80096961 80098551 + MGP_C3HHeJ_P0041492 Cacna1i protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041493.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 80096961 80098551 + MGP_C3HHeJ_P0041493 Cacna1i protein_coding protein_coding MGP_C3HHeJ_T0041494.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 80096961 80098551 + MGP_C3HHeJ_P0041494 Cacna1i protein_coding protein_coding MGP_C3HHeJ_T0041495.1 MGP_C3HHeJ_G0021837.1 mouse_genomes_project 15 80096961 80101500 + MGP_C3HHeJ_P0041495 Cacna1i protein_coding protein_coding MGP_C3HHeJ_T0042124.1 MGP_C3HHeJ_G0022023.1 mouse_genomes_project 15 98899471 98906599 - protein_coding processed_transcript MGP_C3HHeJ_T0040586.1 MGP_C3HHeJ_G0021564.1 mouse_genomes_project 15 40502237 40760701 - MGP_C3HHeJ_P0040586 Angpt1 protein_coding protein_coding MGP_C3HHeJ_T0040405.1 MGP_C3HHeJ_G0021497.1 mouse_genomes_project 15 24216529 24578186 - MGP_C3HHeJ_P0040405 Fbxl7 protein_coding protein_coding MGP_C3HHeJ_T0041757.1 MGP_C3HHeJ_G0021915.1 mouse_genomes_project 15 84702404 84724540 + MGP_C3HHeJ_P0041757 Prr5 protein_coding protein_coding MGP_C3HHeJ_T0041995.1 MGP_C3HHeJ_G0021985.1 mouse_genomes_project 15 92250787 92280657 + MGP_C3HHeJ_P0041995 protein_coding protein_coding MGP_C3HHeJ_T0041996.1 MGP_C3HHeJ_G0021985.1 mouse_genomes_project 15 92250850 92281026 + MGP_C3HHeJ_P0041996 protein_coding protein_coding MGP_C3HHeJ_T0041997.1 MGP_C3HHeJ_G0021985.1 mouse_genomes_project 15 92250858 92258067 + MGP_C3HHeJ_P0041997 protein_coding protein_coding MGP_C3HHeJ_T0041998.1 MGP_C3HHeJ_G0021985.1 mouse_genomes_project 15 92253946 92281028 + MGP_C3HHeJ_P0041998 protein_coding protein_coding MGP_C3HHeJ_T0041999.1 MGP_C3HHeJ_G0021985.1 mouse_genomes_project 15 92256882 92281030 + MGP_C3HHeJ_P0041999 protein_coding protein_coding MGP_C3HHeJ_T0042000.1 MGP_C3HHeJ_G0021985.1 mouse_genomes_project 15 92257981 92281030 + MGP_C3HHeJ_P0042000 protein_coding protein_coding MGP_C3HHeJ_T0042238.1 MGP_C3HHeJ_G0022065.1 mouse_genomes_project 15 100369327 100400644 - MGP_C3HHeJ_P0042238 Faim2 protein_coding protein_coding MGP_C3HHeJ_T0041076.1 MGP_C3HHeJ_G0021722.1 mouse_genomes_project 15 75657594 75660868 + MGP_C3HHeJ_P0041076 Exosc4 protein_coding protein_coding MGP_C3HHeJ_T0041077.1 MGP_C3HHeJ_G0021722.1 mouse_genomes_project 15 75657788 75659285 + Exosc4 protein_coding processed_transcript MGP_C3HHeJ_T0101761.1 MGP_C3HHeJ_G0039726.1 mouse_genomes_project 15 74564338 74566455 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0040901.1 MGP_C3HHeJ_G0021671.1 mouse_genomes_project 15 73838720 73842171 + MGP_C3HHeJ_P0040901 Them6 protein_coding protein_coding MGP_C3HHeJ_T0042307.1 MGP_C3HHeJ_G0022089.1 mouse_genomes_project 15 101491528 101514179 - MGP_C3HHeJ_P0042307 Csrnp2 protein_coding protein_coding MGP_C3HHeJ_T0042143.1 MGP_C3HHeJ_G0022033.1 mouse_genomes_project 15 99294395 99313588 - MGP_C3HHeJ_P0042143 Kansl2 protein_coding protein_coding MGP_C3HHeJ_T0042144.1 MGP_C3HHeJ_G0022033.1 mouse_genomes_project 15 99294675 99313565 - MGP_C3HHeJ_P0042144 Kansl2 protein_coding protein_coding MGP_C3HHeJ_T0042145.1 MGP_C3HHeJ_G0022033.1 mouse_genomes_project 15 99303291 99313390 - MGP_C3HHeJ_P0042145 Kansl2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040483.1 MGP_C3HHeJ_G0021530.1 mouse_genomes_project 15 33888029 33898737 - MGP_C3HHeJ_P0040483 Cox6c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040484.1 MGP_C3HHeJ_G0021530.1 mouse_genomes_project 15 33894271 33901652 - MGP_C3HHeJ_P0040484 Cox6c protein_coding protein_coding MGP_C3HHeJ_T0040485.1 MGP_C3HHeJ_G0021530.1 mouse_genomes_project 15 33894275 33901051 - MGP_C3HHeJ_P0040485 Cox6c protein_coding protein_coding MGP_C3HHeJ_T0040486.1 MGP_C3HHeJ_G0021530.1 mouse_genomes_project 15 33894278 33901613 - Cox6c protein_coding retained_intron MGP_C3HHeJ_T0040487.1 MGP_C3HHeJ_G0021530.1 mouse_genomes_project 15 33898792 33901415 - MGP_C3HHeJ_P0040487 Cox6c protein_coding protein_coding MGP_C3HHeJ_T0100232.1 MGP_C3HHeJ_G0038426.1 mouse_genomes_project 15 2030430 2030511 + Snord72 snoRNA snoRNA MGP_C3HHeJ_T0011286.1 MGP_C3HHeJ_G0009419.1 mouse_genomes_project 15 3461891 3462167 + Gm23218 misc_RNA misc_RNA MGP_C3HHeJ_T0003529.1 MGP_C3HHeJ_G0003201.1 mouse_genomes_project 15 53933310 53936216 - 1700040F17Rik antisense antisense MGP_C3HHeJ_T0098370.1 MGP_C3HHeJ_G0036578.1 mouse_genomes_project 15 35816547 35819097 - Gm15940 sense_intronic sense_intronic MGP_C3HHeJ_T0041770.1 MGP_C3HHeJ_G0021918.1 mouse_genomes_project 15 84932199 84942511 - MGP_C3HHeJ_P0041770 Gm29666 protein_coding protein_coding MGP_C3HHeJ_T0040186.1 MGP_C3HHeJ_G0021438.1 mouse_genomes_project 15 2125767 2163543 - Ptger4 protein_coding processed_transcript MGP_C3HHeJ_T0040187.1 MGP_C3HHeJ_G0021438.1 mouse_genomes_project 15 2154231 2165005 - MGP_C3HHeJ_P0040187 Ptger4 protein_coding protein_coding MGP_C3HHeJ_T0040188.1 MGP_C3HHeJ_G0021438.1 mouse_genomes_project 15 2154231 2165020 - MGP_C3HHeJ_P0040188 Ptger4 protein_coding protein_coding MGP_C3HHeJ_T0042099.1 MGP_C3HHeJ_G0022017.1 mouse_genomes_project 15 98667991 98673853 + MGP_C3HHeJ_P0042099 Tmem106c protein_coding unknown_likely_coding MGP_C3HHeJ_T0042454.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103587219 103589312 + MGP_C3HHeJ_P0042454 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042455.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103587404 103615552 + MGP_C3HHeJ_P0042455 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042456.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103587409 103615552 + MGP_C3HHeJ_P0042456 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042457.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103587456 103619280 + MGP_C3HHeJ_P0042457 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042458.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103587831 103589694 + MGP_C3HHeJ_P0042458 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042459.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103588345 103589312 + MGP_C3HHeJ_P0042459 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042460.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103588664 103589462 + MGP_C3HHeJ_P0042460 Sp1 protein_coding protein_coding MGP_C3HHeJ_T0042461.1 MGP_C3HHeJ_G0022145.1 mouse_genomes_project 15 103612727 103613648 + Sp1 protein_coding processed_transcript MGP_C3HHeJ_T0042330.1 MGP_C3HHeJ_G0022096.1 mouse_genomes_project 15 101732008 101772846 - MGP_C3HHeJ_P0042330 Galnt6 protein_coding protein_coding MGP_C3HHeJ_T0042331.1 MGP_C3HHeJ_G0022096.1 mouse_genomes_project 15 101732010 101772846 - MGP_C3HHeJ_P0042331 Galnt6 protein_coding protein_coding MGP_C3HHeJ_T0042332.1 MGP_C3HHeJ_G0022096.1 mouse_genomes_project 15 101733059 101761488 - MGP_C3HHeJ_P0042332 Galnt6 protein_coding protein_coding MGP_C3HHeJ_T0009946.1 MGP_C3HHeJ_G0008079.1 mouse_genomes_project 15 23607450 23607511 + Mir7212 miRNA miRNA MGP_C3HHeJ_T0009954.1 MGP_C3HHeJ_G0008087.1 mouse_genomes_project 15 35408795 35408921 - Gm23654 miRNA miRNA MGP_C3HHeJ_T0042306.1 MGP_C3HHeJ_G0022088.1 mouse_genomes_project 15 101479742 101491211 + MGP_C3HHeJ_P0042306 Letmd1 protein_coding protein_coding MGP_C3HHeJ_T0041931.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89722344 89740801 - Chkb protein_coding retained_intron MGP_C3HHeJ_T0041936.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89737464 89740965 - Chkb protein_coding retained_intron MGP_C3HHeJ_T0041937.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89737464 89738266 - Chkb protein_coding processed_transcript MGP_C3HHeJ_T0041938.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89737471 89740544 - Chkb protein_coding retained_intron MGP_C3HHeJ_T0041939.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89737471 89741004 - MGP_C3HHeJ_P0041939 Chkb protein_coding protein_coding MGP_C3HHeJ_T0041940.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89737545 89739598 - MGP_C3HHeJ_P0041940 Chkb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041941.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89737572 89738264 - Chkb protein_coding retained_intron MGP_C3HHeJ_T0041942.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89738219 89741013 - Chkb protein_coding retained_intron MGP_C3HHeJ_T0041943.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89738484 89740535 - Chkb protein_coding retained_intron MGP_C3HHeJ_T0041944.1 MGP_C3HHeJ_G0021969.1 mouse_genomes_project 15 89738739 89740198 - MGP_C3HHeJ_P0041944 Chkb protein_coding protein_coding MGP_C3HHeJ_T0009952.1 MGP_C3HHeJ_G0008085.1 mouse_genomes_project 15 34572519 34572645 + Gm44310 miRNA miRNA MGP_C3HHeJ_T0040556.1 MGP_C3HHeJ_G0021551.1 mouse_genomes_project 15 36903331 36922504 + MGP_C3HHeJ_P0040556 Baalc protein_coding protein_coding MGP_C3HHeJ_T0041905.1 MGP_C3HHeJ_G0021961.1 mouse_genomes_project 15 89631772 89634390 + MGP_C3HHeJ_P0041905 Miox protein_coding protein_coding MGP_C3HHeJ_T0041906.1 MGP_C3HHeJ_G0021961.1 mouse_genomes_project 15 89631835 89633499 + Miox protein_coding retained_intron MGP_C3HHeJ_T0041907.1 MGP_C3HHeJ_G0021961.1 mouse_genomes_project 15 89632014 89634010 + Miox protein_coding retained_intron MGP_C3HHeJ_T0041908.1 MGP_C3HHeJ_G0021961.1 mouse_genomes_project 15 89632304 89633787 + MGP_C3HHeJ_P0041908 Miox protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041909.1 MGP_C3HHeJ_G0021961.1 mouse_genomes_project 15 89632305 89633789 + Miox protein_coding retained_intron MGP_C3HHeJ_T0041910.1 MGP_C3HHeJ_G0021961.1 mouse_genomes_project 15 89633807 89634386 + MGP_C3HHeJ_P0041910 Miox protein_coding protein_coding MGP_C3HHeJ_T0006672.1 MGP_C3HHeJ_G0005506.1 mouse_genomes_project 15 36638022 36684027 - 2310043O21Rik lincRNA lincRNA MGP_C3HHeJ_T0042196.1 MGP_C3HHeJ_G0022053.1 mouse_genomes_project 15 99916350 99924765 + MGP_C3HHeJ_P0042196 Troap protein_coding protein_coding MGP_C3HHeJ_T0098976.1 MGP_C3HHeJ_G0037170.1 mouse_genomes_project 15 32427386 32427496 + Gm22208 snRNA snRNA MGP_C3HHeJ_T0040231.1 MGP_C3HHeJ_G0021446.1 mouse_genomes_project 15 4794084 4820642 + MGP_C3HHeJ_P0040231 Gdnf protein_coding protein_coding MGP_C3HHeJ_T0099009.1 MGP_C3HHeJ_G0037203.1 mouse_genomes_project 15 89102353 89102460 + Gm23144 snRNA snRNA MGP_C3HHeJ_T0040922.1 MGP_C3HHeJ_G0021683.1 mouse_genomes_project 15 74017429 74038328 - 2010109I03Rik protein_coding processed_transcript MGP_C3HHeJ_T0040923.1 MGP_C3HHeJ_G0021683.1 mouse_genomes_project 15 74018781 74022087 - MGP_C3HHeJ_P0040923 2010109I03Rik protein_coding protein_coding MGP_C3HHeJ_T0041882.1 MGP_C3HHeJ_G0021956.1 mouse_genomes_project 15 89434241 89459439 - MGP_C3HHeJ_P0041882 Plxnb2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041883.1 MGP_C3HHeJ_G0021956.1 mouse_genomes_project 15 89434245 89435276 - Plxnb2 protein_coding processed_transcript MGP_C3HHeJ_T0041884.1 MGP_C3HHeJ_G0021956.1 mouse_genomes_project 15 89434677 89435941 - Plxnb2 protein_coding processed_transcript MGP_C3HHeJ_T0041885.1 MGP_C3HHeJ_G0021956.1 mouse_genomes_project 15 89439723 89440260 - Plxnb2 protein_coding processed_transcript MGP_C3HHeJ_T0041886.1 MGP_C3HHeJ_G0021956.1 mouse_genomes_project 15 89443603 89444510 - Plxnb2 protein_coding processed_transcript MGP_C3HHeJ_T0009959.1 MGP_C3HHeJ_G0008092.1 mouse_genomes_project 15 49251029 49251119 - Mir1907 miRNA miRNA MGP_C3HHeJ_T0040412.1 MGP_C3HHeJ_G0021502.1 mouse_genomes_project 15 25935952 26207791 + MGP_C3HHeJ_P0040412 Dnah5 protein_coding protein_coding MGP_C3HHeJ_T0041661.1 MGP_C3HHeJ_G0021887.1 mouse_genomes_project 15 82535598 82537217 - MGP_C3HHeJ_P0041661 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0040488.1 MGP_C3HHeJ_G0021531.1 mouse_genomes_project 15 33971471 34110585 - MGP_C3HHeJ_P0040488 Rgs22 protein_coding protein_coding MGP_C3HHeJ_T0040489.1 MGP_C3HHeJ_G0021531.1 mouse_genomes_project 15 33971562 34001925 - MGP_C3HHeJ_P0040489 Rgs22 protein_coding protein_coding MGP_C3HHeJ_T0040490.1 MGP_C3HHeJ_G0021531.1 mouse_genomes_project 15 33972325 34078367 - MGP_C3HHeJ_P0040490 Rgs22 protein_coding protein_coding MGP_C3HHeJ_T0040491.1 MGP_C3HHeJ_G0021531.1 mouse_genomes_project 15 34010104 34051539 - MGP_C3HHeJ_P0040491 Rgs22 protein_coding protein_coding MGP_C3HHeJ_T0040492.1 MGP_C3HHeJ_G0021531.1 mouse_genomes_project 15 34109415 34110570 - Rgs22 protein_coding retained_intron MGP_C3HHeJ_T0040818.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65829098 65869171 - MGP_C3HHeJ_P0040818 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040819.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65830643 65834247 - Ndrg1 protein_coding retained_intron MGP_C3HHeJ_T0040820.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65830854 65869170 - MGP_C3HHeJ_P0040820 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040821.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65833935 65869170 - Ndrg1 protein_coding retained_intron MGP_C3HHeJ_T0040822.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65841789 65869170 - MGP_C3HHeJ_P0040822 Ndrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040823.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842851 65869170 - MGP_C3HHeJ_P0040823 Ndrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040824.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842856 65867455 - MGP_C3HHeJ_P0040824 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040825.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842856 65848256 - MGP_C3HHeJ_P0040825 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040826.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842869 65869147 - MGP_C3HHeJ_P0040826 Ndrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040827.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842874 65869126 - MGP_C3HHeJ_P0040827 Ndrg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040828.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842906 65869147 - MGP_C3HHeJ_P0040828 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040829.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65842913 65867470 - MGP_C3HHeJ_P0040829 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040830.1 MGP_C3HHeJ_G0021649.1 mouse_genomes_project 15 65846312 65869171 - MGP_C3HHeJ_P0040830 Ndrg1 protein_coding protein_coding MGP_C3HHeJ_T0040264.1 MGP_C3HHeJ_G0021455.1 mouse_genomes_project 15 6167941 6228009 + MGP_C3HHeJ_P0040264 Lmbrd2 protein_coding protein_coding MGP_C3HHeJ_T0042339.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101922870 101991303 + MGP_C3HHeJ_P0042339 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042340.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101922870 101991303 + MGP_C3HHeJ_P0042340 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042341.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101923657 102075879 + MGP_C3HHeJ_P0042341 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042342.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101923673 101991303 + MGP_C3HHeJ_P0042342 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042343.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101923695 102110579 + MGP_C3HHeJ_P0042343 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042344.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101923895 102110588 + MGP_C3HHeJ_P0042344 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042345.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101923936 102106379 + MGP_C3HHeJ_P0042345 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042346.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101923943 102106296 + MGP_C3HHeJ_P0042346 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042347.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101924411 101991303 + MGP_C3HHeJ_P0042347 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042348.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101988404 101998624 + MGP_C3HHeJ_P0042348 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042349.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101991246 102110579 + MGP_C3HHeJ_P0042349 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042350.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101991281 101998247 + MGP_C3HHeJ_P0042350 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042351.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 101991300 102105373 + MGP_C3HHeJ_P0042351 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042352.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102016423 102022352 + MGP_C3HHeJ_P0042352 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042353.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102017834 102020675 + Scn8a protein_coding retained_intron MGP_C3HHeJ_T0042354.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102017869 102020522 + Scn8a protein_coding retained_intron MGP_C3HHeJ_T0042355.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102017998 102066170 + MGP_C3HHeJ_P0042355 Scn8a protein_coding protein_coding MGP_C3HHeJ_T0042356.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102030411 102032052 + Scn8a protein_coding retained_intron MGP_C3HHeJ_T0042357.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102031936 102037586 + Scn8a protein_coding retained_intron MGP_C3HHeJ_T0042358.1 MGP_C3HHeJ_G0022098.1 mouse_genomes_project 15 102080731 102094561 + Scn8a protein_coding processed_transcript MGP_C3HHeJ_T0040801.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65554897 65749614 + MGP_C3HHeJ_P0040801 Tg protein_coding protein_coding MGP_C3HHeJ_T0040802.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65581047 65749500 + MGP_C3HHeJ_P0040802 Tg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040803.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65594711 65607039 + Tg protein_coding processed_transcript MGP_C3HHeJ_T0040804.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65598719 65749500 + MGP_C3HHeJ_P0040804 Tg protein_coding protein_coding MGP_C3HHeJ_T0040805.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65607792 65617066 + Tg protein_coding processed_transcript MGP_C3HHeJ_T0040806.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65608434 65621450 + Tg protein_coding processed_transcript MGP_C3HHeJ_T0040807.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65631044 65749614 + MGP_C3HHeJ_P0040807 Tg protein_coding protein_coding MGP_C3HHeJ_T0040813.1 MGP_C3HHeJ_G0021646.1 mouse_genomes_project 15 65695410 65749614 + Tg protein_coding processed_transcript MGP_C3HHeJ_T0003573.1 MGP_C3HHeJ_G0003236.1 mouse_genomes_project 15 104338520 104341349 + Gm10830 antisense antisense MGP_C3HHeJ_T0040141.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 114122 121367 + MGP_C3HHeJ_P0040141 protein_coding protein_coding MGP_C3HHeJ_T0040142.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 116342 126093 + MGP_C3HHeJ_P0040142 protein_coding protein_coding MGP_C3HHeJ_T0040143.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 116386 121320 + MGP_C3HHeJ_P0040143 protein_coding protein_coding MGP_C3HHeJ_T0040144.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 116496 126092 + MGP_C3HHeJ_P0040144 protein_coding protein_coding MGP_C3HHeJ_T0040145.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 116573 121249 + MGP_C3HHeJ_P0040145 protein_coding protein_coding MGP_C3HHeJ_T0040146.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 116574 120707 + protein_coding retained_intron MGP_C3HHeJ_T0040147.1 MGP_C3HHeJ_G0021423.1 mouse_genomes_project 15 117669 122856 + MGP_C3HHeJ_P0040147 protein_coding protein_coding MGP_C3HHeJ_T0042565.1 MGP_C3HHeJ_G0022175.1 mouse_genomes_project 15 104705153 104715827 - MGP_C3HHeJ_P0042565 BC048502 protein_coding protein_coding MGP_C3HHeJ_T0041888.1 MGP_C3HHeJ_G0021958.1 mouse_genomes_project 15 89495689 89576507 + MGP_C3HHeJ_P0041888 Ppp6r2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041889.1 MGP_C3HHeJ_G0021958.1 mouse_genomes_project 15 89544601 89579650 + MGP_C3HHeJ_P0041889 Ppp6r2 protein_coding protein_coding MGP_C3HHeJ_T0040367.1 MGP_C3HHeJ_G0021485.1 mouse_genomes_project 15 14057002 14190828 + MGP_C3HHeJ_P0040367 Cdh9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040368.1 MGP_C3HHeJ_G0021485.1 mouse_genomes_project 15 14107940 14190831 + MGP_C3HHeJ_P0040368 Cdh9 protein_coding protein_coding MGP_C3HHeJ_T0041715.1 MGP_C3HHeJ_G0021904.1 mouse_genomes_project 15 83551076 83677773 - MGP_C3HHeJ_P0041715 Scube1 protein_coding protein_coding MGP_C3HHeJ_T0041716.1 MGP_C3HHeJ_G0021904.1 mouse_genomes_project 15 83553492 83677773 - Scube1 protein_coding retained_intron MGP_C3HHeJ_T0041717.1 MGP_C3HHeJ_G0021904.1 mouse_genomes_project 15 83553496 83677773 - MGP_C3HHeJ_P0041717 Scube1 protein_coding protein_coding MGP_C3HHeJ_T0041718.1 MGP_C3HHeJ_G0021904.1 mouse_genomes_project 15 83554999 83677773 - MGP_C3HHeJ_P0041718 Scube1 protein_coding protein_coding MGP_C3HHeJ_T0041719.1 MGP_C3HHeJ_G0021904.1 mouse_genomes_project 15 83554999 83677773 - MGP_C3HHeJ_P0041719 Scube1 protein_coding protein_coding MGP_C3HHeJ_T0012938.1 MGP_C3HHeJ_G0011042.1 mouse_genomes_project 15 45904115 45908138 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041710.1 MGP_C3HHeJ_G0021901.1 mouse_genomes_project 15 83491252 83500159 - MGP_C3HHeJ_P0041710 Mcat protein_coding protein_coding MGP_C3HHeJ_T0041699.1 MGP_C3HHeJ_G0021896.1 mouse_genomes_project 15 83154073 83181429 - MGP_C3HHeJ_P0041699 A4galt protein_coding protein_coding MGP_C3HHeJ_T0041700.1 MGP_C3HHeJ_G0021896.1 mouse_genomes_project 15 83154073 83181386 - MGP_C3HHeJ_P0041700 A4galt protein_coding protein_coding MGP_C3HHeJ_T0012950.1 MGP_C3HHeJ_G0011054.1 mouse_genomes_project 15 75068336 75158797 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041422.1 MGP_C3HHeJ_G0021818.1 mouse_genomes_project 15 79336693 79345102 + MGP_C3HHeJ_P0041422 Cby1 protein_coding protein_coding MGP_C3HHeJ_T0041247.1 MGP_C3HHeJ_G0021766.1 mouse_genomes_project 15 77172268 77230297 - MGP_C3HHeJ_P0041247 protein_coding protein_coding MGP_C3HHeJ_T0101752.1 MGP_C3HHeJ_G0039717.1 mouse_genomes_project 15 74089813 74089964 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0042109.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98745985 98801399 - MGP_C3HHeJ_P0042109 Senp1 protein_coding protein_coding MGP_C3HHeJ_T0042110.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98746381 98773096 - Senp1 protein_coding retained_intron MGP_C3HHeJ_T0042111.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98746542 98802269 - MGP_C3HHeJ_P0042111 Senp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042112.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98746882 98801951 - MGP_C3HHeJ_P0042112 Senp1 protein_coding protein_coding MGP_C3HHeJ_T0042113.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98748033 98754101 - Senp1 protein_coding processed_transcript MGP_C3HHeJ_T0042114.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98771962 98802070 - Senp1 protein_coding retained_intron MGP_C3HHeJ_T0042115.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98793758 98796261 - MGP_C3HHeJ_P0042115 Senp1 protein_coding protein_coding MGP_C3HHeJ_T0042116.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98797273 98802005 - Senp1 protein_coding processed_transcript MGP_C3HHeJ_T0042117.1 MGP_C3HHeJ_G0022019.1 mouse_genomes_project 15 98797907 98801587 - Senp1 protein_coding processed_transcript MGP_C3HHeJ_T0042093.1 MGP_C3HHeJ_G0022016.1 mouse_genomes_project 15 98556763 98611064 - MGP_C3HHeJ_P0042093 Vdr protein_coding protein_coding MGP_C3HHeJ_T0042094.1 MGP_C3HHeJ_G0022016.1 mouse_genomes_project 15 98559874 98562035 - Vdr protein_coding retained_intron MGP_C3HHeJ_T0042095.1 MGP_C3HHeJ_G0022016.1 mouse_genomes_project 15 98579086 98598897 - MGP_C3HHeJ_P0042095 Vdr protein_coding protein_coding MGP_C3HHeJ_T0042096.1 MGP_C3HHeJ_G0022016.1 mouse_genomes_project 15 98579158 98614429 - MGP_C3HHeJ_P0042096 Vdr protein_coding protein_coding MGP_C3HHeJ_T0042097.1 MGP_C3HHeJ_G0022016.1 mouse_genomes_project 15 98587117 98614429 - MGP_C3HHeJ_P0042097 Vdr protein_coding protein_coding MGP_C3HHeJ_T0042098.1 MGP_C3HHeJ_G0022016.1 mouse_genomes_project 15 98587129 98612316 - MGP_C3HHeJ_P0042098 Vdr protein_coding protein_coding MGP_C3HHeJ_T0041416.1 MGP_C3HHeJ_G0021816.1 mouse_genomes_project 15 79233068 79280122 - MGP_C3HHeJ_P0041416 Dmc1 protein_coding protein_coding MGP_C3HHeJ_T0041067.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75625782 75636290 - MGP_C3HHeJ_P0041067 Oplah protein_coding protein_coding MGP_C3HHeJ_T0041068.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75625788 75626678 - Oplah protein_coding retained_intron MGP_C3HHeJ_T0041069.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75625788 75636434 - MGP_C3HHeJ_P0041069 Oplah protein_coding protein_coding MGP_C3HHeJ_T0041070.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75626528 75627226 - Oplah protein_coding retained_intron MGP_C3HHeJ_T0041071.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75629772 75630301 - Oplah protein_coding retained_intron MGP_C3HHeJ_T0041072.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75630061 75631548 - Oplah protein_coding retained_intron MGP_C3HHeJ_T0041073.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75630139 75636578 - MGP_C3HHeJ_P0041073 Oplah protein_coding protein_coding MGP_C3HHeJ_T0041074.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75631249 75632386 - Oplah protein_coding processed_transcript MGP_C3HHeJ_T0041075.1 MGP_C3HHeJ_G0021721.1 mouse_genomes_project 15 75635675 75658213 - MGP_C3HHeJ_P0041075 Oplah protein_coding protein_coding MGP_C3HHeJ_T0040570.1 MGP_C3HHeJ_G0021558.1 mouse_genomes_project 15 37744090 37841412 - MGP_C3HHeJ_P0040570 Dpys protein_coding protein_coding MGP_C3HHeJ_T0040571.1 MGP_C3HHeJ_G0021558.1 mouse_genomes_project 15 37759072 37841415 - MGP_C3HHeJ_P0040571 Dpys protein_coding protein_coding MGP_C3HHeJ_T0040572.1 MGP_C3HHeJ_G0021558.1 mouse_genomes_project 15 37759079 37769447 - MGP_C3HHeJ_P0040572 Dpys protein_coding protein_coding MGP_C3HHeJ_T0040573.1 MGP_C3HHeJ_G0021558.1 mouse_genomes_project 15 37840526 37841415 - Dpys protein_coding processed_transcript MGP_C3HHeJ_T0041286.1 MGP_C3HHeJ_G0021780.1 mouse_genomes_project 15 78011279 78018569 + MGP_C3HHeJ_P0041286 Mpst protein_coding protein_coding MGP_C3HHeJ_T0041287.1 MGP_C3HHeJ_G0021780.1 mouse_genomes_project 15 78011368 78018569 + MGP_C3HHeJ_P0041287 Mpst protein_coding protein_coding MGP_C3HHeJ_T0041288.1 MGP_C3HHeJ_G0021780.1 mouse_genomes_project 15 78011671 78018569 + MGP_C3HHeJ_P0041288 Mpst protein_coding protein_coding MGP_C3HHeJ_T0040434.1 MGP_C3HHeJ_G0021511.1 mouse_genomes_project 15 29410119 29429842 + Fam173b protein_coding processed_transcript MGP_C3HHeJ_T0040435.1 MGP_C3HHeJ_G0021511.1 mouse_genomes_project 15 29410385 29425512 + MGP_C3HHeJ_P0040435 Fam173b protein_coding protein_coding MGP_C3HHeJ_T0040436.1 MGP_C3HHeJ_G0021511.1 mouse_genomes_project 15 29410385 29426586 + MGP_C3HHeJ_P0040436 Fam173b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041316.1 MGP_C3HHeJ_G0021792.1 mouse_genomes_project 15 78477057 78482921 - MGP_C3HHeJ_P0041316 Lgals2 protein_coding protein_coding MGP_C3HHeJ_T0000904.1 MGP_C3HHeJ_G0000844.1 mouse_genomes_project 15 9781117 9783402 - TEC TEC MGP_C3HHeJ_T0099016.1 MGP_C3HHeJ_G0037210.1 mouse_genomes_project 15 100698000 100698107 - Gm25897 snRNA snRNA MGP_C3HHeJ_T0040911.1 MGP_C3HHeJ_G0021677.1 mouse_genomes_project 15 73889760 73897769 - MGP_C3HHeJ_P0040911 D730001G18Rik protein_coding protein_coding MGP_C3HHeJ_T0040912.1 MGP_C3HHeJ_G0021677.1 mouse_genomes_project 15 73889761 73897804 - MGP_C3HHeJ_P0040912 D730001G18Rik protein_coding protein_coding MGP_C3HHeJ_T0041745.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84313636 84318160 + Parvg protein_coding processed_transcript MGP_C3HHeJ_T0041746.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84314330 84335400 + MGP_C3HHeJ_P0041746 Parvg protein_coding protein_coding MGP_C3HHeJ_T0041747.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84314344 84320000 + MGP_C3HHeJ_P0041747 Parvg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041748.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84314372 84319986 + MGP_C3HHeJ_P0041748 Parvg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041749.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84314405 84321205 + Parvg protein_coding processed_transcript MGP_C3HHeJ_T0041750.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84317228 84320036 + MGP_C3HHeJ_P0041750 Parvg protein_coding protein_coding MGP_C3HHeJ_T0041751.1 MGP_C3HHeJ_G0021912.1 mouse_genomes_project 15 84317228 84335436 + MGP_C3HHeJ_P0041751 Parvg protein_coding protein_coding MGP_C3HHeJ_T0098574.1 MGP_C3HHeJ_G0036772.1 mouse_genomes_project 15 89162169 89163900 - Gm20621 sense_overlapping sense_overlapping MGP_C3HHeJ_T0098575.1 MGP_C3HHeJ_G0036772.1 mouse_genomes_project 15 89162891 89163909 - Gm20621 sense_overlapping sense_overlapping MGP_C3HHeJ_T0098576.1 MGP_C3HHeJ_G0036772.1 mouse_genomes_project 15 89162896 89163867 - Gm20621 sense_overlapping sense_overlapping MGP_C3HHeJ_T0041814.1 MGP_C3HHeJ_G0021936.1 mouse_genomes_project 15 86154716 86239303 + MGP_C3HHeJ_P0041814 Gramd4 protein_coding protein_coding MGP_C3HHeJ_T0041815.1 MGP_C3HHeJ_G0021936.1 mouse_genomes_project 15 86155748 86239287 + MGP_C3HHeJ_P0041815 Gramd4 protein_coding protein_coding MGP_C3HHeJ_T0041816.1 MGP_C3HHeJ_G0021936.1 mouse_genomes_project 15 86155893 86239300 + MGP_C3HHeJ_P0041816 Gramd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041817.1 MGP_C3HHeJ_G0021936.1 mouse_genomes_project 15 86165734 86224059 + Gramd4 protein_coding processed_transcript MGP_C3HHeJ_T0041818.1 MGP_C3HHeJ_G0021936.1 mouse_genomes_project 15 86172614 86191441 + Gramd4 protein_coding processed_transcript MGP_C3HHeJ_T0040808.1 MGP_C3HHeJ_G0021647.1 mouse_genomes_project 15 65676242 65729164 - MGP_C3HHeJ_P0040808 Sla protein_coding protein_coding MGP_C3HHeJ_T0040809.1 MGP_C3HHeJ_G0021647.1 mouse_genomes_project 15 65676287 65709153 - MGP_C3HHeJ_P0040809 Sla protein_coding protein_coding MGP_C3HHeJ_T0040810.1 MGP_C3HHeJ_G0021647.1 mouse_genomes_project 15 65677501 65698254 - MGP_C3HHeJ_P0040810 Sla protein_coding protein_coding MGP_C3HHeJ_T0040811.1 MGP_C3HHeJ_G0021647.1 mouse_genomes_project 15 65677965 65729347 - MGP_C3HHeJ_P0040811 Sla protein_coding protein_coding MGP_C3HHeJ_T0040812.1 MGP_C3HHeJ_G0021647.1 mouse_genomes_project 15 65681143 65700411 - Sla protein_coding retained_intron MGP_C3HHeJ_T0041304.1 MGP_C3HHeJ_G0021785.1 mouse_genomes_project 15 78142442 78149775 - MGP_C3HHeJ_P0041304 Sstr3 protein_coding protein_coding MGP_C3HHeJ_T0006664.1 MGP_C3HHeJ_G0005499.1 mouse_genomes_project 15 22610535 22660915 - Gm2824 lincRNA lincRNA MGP_C3HHeJ_T0006665.1 MGP_C3HHeJ_G0005499.1 mouse_genomes_project 15 22633261 22660858 - Gm2824 lincRNA lincRNA MGP_C3HHeJ_T0041145.1 MGP_C3HHeJ_G0021735.1 mouse_genomes_project 15 75854620 75860382 - MGP_C3HHeJ_P0041145 Scrt1 protein_coding protein_coding MGP_C3HHeJ_T0041146.1 MGP_C3HHeJ_G0021735.1 mouse_genomes_project 15 75854630 75860155 - MGP_C3HHeJ_P0041146 Scrt1 protein_coding protein_coding MGP_C3HHeJ_T0017249.1 MGP_C3HHeJ_G0015066.1 mouse_genomes_project 15 78965364 78966732 + Gm20420 processed_transcript processed_transcript MGP_C3HHeJ_T0006702.1 MGP_C3HHeJ_G0005524.1 mouse_genomes_project 15 81576789 81578618 - Gm17597 lincRNA lincRNA MGP_C3HHeJ_T0012949.1 MGP_C3HHeJ_G0011053.1 mouse_genomes_project 15 73836308 73836452 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040357.1 MGP_C3HHeJ_G0021482.1 mouse_genomes_project 15 9959913 9977347 - MGP_C3HHeJ_P0040357 6030458C11Rik protein_coding protein_coding MGP_C3HHeJ_T0042437.1 MGP_C3HHeJ_G0022141.1 mouse_genomes_project 15 103502388 103507581 + Pfdn5 protein_coding retained_intron MGP_C3HHeJ_T0042438.1 MGP_C3HHeJ_G0022141.1 mouse_genomes_project 15 103502409 103507522 + MGP_C3HHeJ_P0042438 Pfdn5 protein_coding protein_coding MGP_C3HHeJ_T0042439.1 MGP_C3HHeJ_G0022141.1 mouse_genomes_project 15 103502409 103507659 + MGP_C3HHeJ_P0042439 Pfdn5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042440.1 MGP_C3HHeJ_G0022141.1 mouse_genomes_project 15 103502409 103507668 + MGP_C3HHeJ_P0042440 Pfdn5 protein_coding protein_coding MGP_C3HHeJ_T0042441.1 MGP_C3HHeJ_G0022141.1 mouse_genomes_project 15 103502611 103507635 + MGP_C3HHeJ_P0042441 Pfdn5 protein_coding protein_coding MGP_C3HHeJ_T0040162.1 MGP_C3HHeJ_G0021427.1 mouse_genomes_project 15 868907 882626 - MGP_C3HHeJ_P0040162 AW549877 protein_coding protein_coding MGP_C3HHeJ_T0041792.1 MGP_C3HHeJ_G0021930.1 mouse_genomes_project 15 85881310 85888278 - MGP_C3HHeJ_P0041792 Cdpf1 protein_coding protein_coding MGP_C3HHeJ_T0041793.1 MGP_C3HHeJ_G0021930.1 mouse_genomes_project 15 85881538 85888236 - MGP_C3HHeJ_P0041793 Cdpf1 protein_coding protein_coding MGP_C3HHeJ_T0041794.1 MGP_C3HHeJ_G0021930.1 mouse_genomes_project 15 85881582 85888226 - MGP_C3HHeJ_P0041794 Cdpf1 protein_coding protein_coding MGP_C3HHeJ_T0041795.1 MGP_C3HHeJ_G0021930.1 mouse_genomes_project 15 85881585 85887672 - MGP_C3HHeJ_P0041795 Cdpf1 protein_coding protein_coding MGP_C3HHeJ_T0041796.1 MGP_C3HHeJ_G0021930.1 mouse_genomes_project 15 85881595 85888279 - MGP_C3HHeJ_P0041796 Cdpf1 protein_coding protein_coding MGP_C3HHeJ_T0041797.1 MGP_C3HHeJ_G0021930.1 mouse_genomes_project 15 85882582 85888241 - MGP_C3HHeJ_P0041797 Cdpf1 protein_coding protein_coding MGP_C3HHeJ_T0041593.1 MGP_C3HHeJ_G0021861.1 mouse_genomes_project 15 81643659 81651257 - MGP_C3HHeJ_P0041593 Phf5a protein_coding protein_coding MGP_C3HHeJ_T0041594.1 MGP_C3HHeJ_G0021861.1 mouse_genomes_project 15 81645008 81651011 - Phf5a protein_coding processed_transcript MGP_C3HHeJ_T0042397.1 MGP_C3HHeJ_G0022121.1 mouse_genomes_project 15 102949992 102957294 - MGP_C3HHeJ_P0042397 Krt2 protein_coding protein_coding MGP_C3HHeJ_T0040736.1 MGP_C3HHeJ_G0021629.1 mouse_genomes_project 15 59575655 59579337 - MGP_C3HHeJ_P0040736 A1bg protein_coding protein_coding MGP_C3HHeJ_T0040481.1 MGP_C3HHeJ_G0021528.1 mouse_genomes_project 15 33229620 33236827 + MGP_C3HHeJ_P0040481 Osr2 protein_coding protein_coding MGP_C3HHeJ_T0012924.1 MGP_C3HHeJ_G0011028.1 mouse_genomes_project 15 15576347 15577565 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041850.1 MGP_C3HHeJ_G0021949.1 mouse_genomes_project 15 89334329 89345560 + MGP_C3HHeJ_P0041850 Panx2 protein_coding protein_coding MGP_C3HHeJ_T0041851.1 MGP_C3HHeJ_G0021949.1 mouse_genomes_project 15 89334342 89346589 + MGP_C3HHeJ_P0041851 Panx2 protein_coding protein_coding MGP_C3HHeJ_T0041852.1 MGP_C3HHeJ_G0021949.1 mouse_genomes_project 15 89345354 89349210 + MGP_C3HHeJ_P0041852 Panx2 protein_coding protein_coding MGP_C3HHeJ_T0042567.1 MGP_C3HHeJ_G0022177.1 mouse_genomes_project 15 104773494 104800212 + MGP_C3HHeJ_P0042567 Pde1b protein_coding protein_coding MGP_C3HHeJ_T0100253.1 MGP_C3HHeJ_G0038447.1 mouse_genomes_project 15 42454624 42454750 + Gm24903 snoRNA snoRNA MGP_C3HHeJ_T0040921.1 MGP_C3HHeJ_G0021682.1 mouse_genomes_project 15 73986864 73994826 - MGP_C3HHeJ_P0040921 Cyp11b2 protein_coding protein_coding MGP_C3HHeJ_T0041177.1 MGP_C3HHeJ_G0021743.1 mouse_genomes_project 15 75999930 76007265 + MGP_C3HHeJ_P0041177 Kifc2 protein_coding protein_coding MGP_C3HHeJ_T0041946.1 MGP_C3HHeJ_G0021972.1 mouse_genomes_project 15 89767154 89777714 + MGP_C3HHeJ_P0041946 Mapk8ip2 protein_coding protein_coding MGP_C3HHeJ_T0041947.1 MGP_C3HHeJ_G0021972.1 mouse_genomes_project 15 89768313 89769930 + MGP_C3HHeJ_P0041947 Mapk8ip2 protein_coding protein_coding MGP_C3HHeJ_T0042516.1 MGP_C3HHeJ_G0022156.1 mouse_genomes_project 15 103915892 103931271 - MGP_C3HHeJ_P0042516 Calcoco1 protein_coding protein_coding MGP_C3HHeJ_T0042517.1 MGP_C3HHeJ_G0022156.1 mouse_genomes_project 15 103916085 103919016 - MGP_C3HHeJ_P0042517 Calcoco1 protein_coding protein_coding MGP_C3HHeJ_T0042518.1 MGP_C3HHeJ_G0022156.1 mouse_genomes_project 15 103916698 103931224 - MGP_C3HHeJ_P0042518 Calcoco1 protein_coding protein_coding MGP_C3HHeJ_T0042519.1 MGP_C3HHeJ_G0022156.1 mouse_genomes_project 15 103919317 103924889 - Calcoco1 protein_coding retained_intron MGP_C3HHeJ_T0042373.1 MGP_C3HHeJ_G0022103.1 mouse_genomes_project 15 102296388 102304716 + MGP_C3HHeJ_P0042373 Grasp protein_coding protein_coding MGP_C3HHeJ_T0040831.1 MGP_C3HHeJ_G0021650.1 mouse_genomes_project 15 66002788 66074515 - MGP_C3HHeJ_P0040831 St3gal1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017253.1 MGP_C3HHeJ_G0015069.1 mouse_genomes_project 15 89346877 89350782 - 1810021B22Rik processed_transcript antisense MGP_C3HHeJ_T0017254.1 MGP_C3HHeJ_G0015069.1 mouse_genomes_project 15 89346877 89349930 - 1810021B22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017255.1 MGP_C3HHeJ_G0015069.1 mouse_genomes_project 15 89346879 89351485 - 1810021B22Rik processed_transcript lincRNA MGP_C3HHeJ_T0017256.1 MGP_C3HHeJ_G0015069.1 mouse_genomes_project 15 89346879 89350782 - 1810021B22Rik processed_transcript antisense MGP_C3HHeJ_T0017257.1 MGP_C3HHeJ_G0015069.1 mouse_genomes_project 15 89346879 89350844 - 1810021B22Rik processed_transcript antisense MGP_C3HHeJ_T0041782.1 MGP_C3HHeJ_G0021926.1 mouse_genomes_project 15 85383034 85520562 + MGP_C3HHeJ_P0041782 Atxn10 protein_coding protein_coding MGP_C3HHeJ_T0040972.1 MGP_C3HHeJ_G0021696.1 mouse_genomes_project 15 75014530 75024663 + MGP_C3HHeJ_P0040972 Rhpn1 protein_coding protein_coding MGP_C3HHeJ_T0040973.1 MGP_C3HHeJ_G0021696.1 mouse_genomes_project 15 75014558 75024665 + Rhpn1 protein_coding retained_intron MGP_C3HHeJ_T0040974.1 MGP_C3HHeJ_G0021696.1 mouse_genomes_project 15 75014568 75024660 + Rhpn1 protein_coding retained_intron MGP_C3HHeJ_T0040975.1 MGP_C3HHeJ_G0021696.1 mouse_genomes_project 15 75014579 75024663 + MGP_C3HHeJ_P0040975 Rhpn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040976.1 MGP_C3HHeJ_G0021696.1 mouse_genomes_project 15 75014644 75024480 + MGP_C3HHeJ_P0040976 Rhpn1 protein_coding protein_coding MGP_C3HHeJ_T0042239.1 MGP_C3HHeJ_G0022066.1 mouse_genomes_project 15 100453850 100459340 + MGP_C3HHeJ_P0042239 Aqp2 protein_coding protein_coding MGP_C3HHeJ_T0006684.1 MGP_C3HHeJ_G0005515.1 mouse_genomes_project 15 53430276 53441909 + Gm26684 lincRNA lincRNA MGP_C3HHeJ_T0040955.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74855817 74872812 - MGP_C3HHeJ_P0040955 Ly6h protein_coding protein_coding MGP_C3HHeJ_T0040956.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74859213 74872812 - MGP_C3HHeJ_P0040956 Ly6h protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040957.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74870911 74873419 - MGP_C3HHeJ_P0040957 Ly6h protein_coding protein_coding MGP_C3HHeJ_T0040958.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74870912 74873020 - MGP_C3HHeJ_P0040958 Ly6h protein_coding protein_coding MGP_C3HHeJ_T0040959.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74870914 74872821 - MGP_C3HHeJ_P0040959 Ly6h protein_coding protein_coding MGP_C3HHeJ_T0040960.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74871193 74873380 - MGP_C3HHeJ_P0040960 Ly6h protein_coding protein_coding MGP_C3HHeJ_T0040961.1 MGP_C3HHeJ_G0021692.1 mouse_genomes_project 15 74871380 74872796 - Ly6h protein_coding retained_intron MGP_C3HHeJ_T0040721.1 MGP_C3HHeJ_G0021621.1 mouse_genomes_project 15 57540331 57546009 + MGP_C3HHeJ_P0040721 Ndufb9 protein_coding protein_coding MGP_C3HHeJ_T0042040.1 MGP_C3HHeJ_G0021997.1 mouse_genomes_project 15 95163286 95650602 + MGP_C3HHeJ_P0042040 Tmem117 protein_coding protein_coding MGP_C3HHeJ_T0000907.1 MGP_C3HHeJ_G0000847.1 mouse_genomes_project 15 22851676 22852186 - TEC TEC MGP_C3HHeJ_T0042061.1 MGP_C3HHeJ_G0022009.1 mouse_genomes_project 15 97895351 97898565 - MGP_C3HHeJ_P0042061 Amigo2 protein_coding protein_coding MGP_C3HHeJ_T0098967.1 MGP_C3HHeJ_G0037161.1 mouse_genomes_project 15 454776 454902 - Gm22031 snRNA snRNA MGP_C3HHeJ_T0042372.1 MGP_C3HHeJ_G0022102.1 mouse_genomes_project 15 102245741 102285897 + MGP_C3HHeJ_P0042372 protein_coding protein_coding MGP_C3HHeJ_T0098055.1 MGP_C3HHeJ_G0036267.1 mouse_genomes_project 15 101460118 101460228 + n-R5s43 rRNA rRNA MGP_C3HHeJ_T0040720.1 MGP_C3HHeJ_G0021620.1 mouse_genomes_project 15 57497998 57540252 - MGP_C3HHeJ_P0040720 Tatdn1 protein_coding protein_coding MGP_C3HHeJ_T0042376.1 MGP_C3HHeJ_G0022106.1 mouse_genomes_project 15 102426665 102447202 - MGP_C3HHeJ_P0042376 Krt80 protein_coding protein_coding MGP_C3HHeJ_T0040307.1 MGP_C3HHeJ_G0021466.1 mouse_genomes_project 15 7540470 7548142 + MGP_C3HHeJ_P0040307 Rad1 protein_coding protein_coding MGP_C3HHeJ_T0040308.1 MGP_C3HHeJ_G0021466.1 mouse_genomes_project 15 7540501 7548137 + Rad1 protein_coding retained_intron MGP_C3HHeJ_T0040309.1 MGP_C3HHeJ_G0021466.1 mouse_genomes_project 15 7540521 7553299 + MGP_C3HHeJ_P0040309 Rad1 protein_coding protein_coding MGP_C3HHeJ_T0040310.1 MGP_C3HHeJ_G0021466.1 mouse_genomes_project 15 7540532 7544800 + MGP_C3HHeJ_P0040310 Rad1 protein_coding protein_coding MGP_C3HHeJ_T0040311.1 MGP_C3HHeJ_G0021466.1 mouse_genomes_project 15 7540927 7547816 + MGP_C3HHeJ_P0040311 Rad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040312.1 MGP_C3HHeJ_G0021466.1 mouse_genomes_project 15 7541061 7548127 + MGP_C3HHeJ_P0040312 Rad1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042398.1 MGP_C3HHeJ_G0022122.1 mouse_genomes_project 15 102985916 103011647 - MGP_C3HHeJ_P0042398 Krt77 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042400.1 MGP_C3HHeJ_G0022122.1 mouse_genomes_project 15 103000046 103011734 - MGP_C3HHeJ_P0042400 Krt77 protein_coding protein_coding MGP_C3HHeJ_T0042219.1 MGP_C3HHeJ_G0022061.1 mouse_genomes_project 15 100181373 100234603 - MGP_C3HHeJ_P0042219 Fmnl3 protein_coding protein_coding MGP_C3HHeJ_T0042220.1 MGP_C3HHeJ_G0022061.1 mouse_genomes_project 15 100181373 100234570 - MGP_C3HHeJ_P0042220 Fmnl3 protein_coding protein_coding MGP_C3HHeJ_T0042221.1 MGP_C3HHeJ_G0022061.1 mouse_genomes_project 15 100181373 100234570 - MGP_C3HHeJ_P0042221 Fmnl3 protein_coding protein_coding MGP_C3HHeJ_T0042222.1 MGP_C3HHeJ_G0022061.1 mouse_genomes_project 15 100188548 100189816 - Fmnl3 protein_coding retained_intron MGP_C3HHeJ_T0042223.1 MGP_C3HHeJ_G0022061.1 mouse_genomes_project 15 100192035 100199920 - Fmnl3 protein_coding processed_transcript MGP_C3HHeJ_T0041837.1 MGP_C3HHeJ_G0021945.1 mouse_genomes_project 15 89133484 89137017 + MGP_C3HHeJ_P0041837 Pim3 protein_coding protein_coding MGP_C3HHeJ_T0040839.1 MGP_C3HHeJ_G0021654.1 mouse_genomes_project 15 70800684 71047532 - MGP_C3HHeJ_P0040839 Col22a1 protein_coding protein_coding MGP_C3HHeJ_T0040840.1 MGP_C3HHeJ_G0021654.1 mouse_genomes_project 15 70876188 70905854 - MGP_C3HHeJ_P0040840 Col22a1 protein_coding protein_coding MGP_C3HHeJ_T0040841.1 MGP_C3HHeJ_G0021654.1 mouse_genomes_project 15 70912927 70964651 - Col22a1 protein_coding processed_transcript MGP_C3HHeJ_T0040842.1 MGP_C3HHeJ_G0021654.1 mouse_genomes_project 15 70932194 70964676 - MGP_C3HHeJ_P0040842 Col22a1 protein_coding protein_coding MGP_C3HHeJ_T0041772.1 MGP_C3HHeJ_G0021920.1 mouse_genomes_project 15 84966306 85012916 - MGP_C3HHeJ_P0041772 5031439G07Rik protein_coding protein_coding MGP_C3HHeJ_T0041773.1 MGP_C3HHeJ_G0021920.1 mouse_genomes_project 15 84970356 84983339 - 5031439G07Rik protein_coding retained_intron MGP_C3HHeJ_T0041774.1 MGP_C3HHeJ_G0021920.1 mouse_genomes_project 15 84978042 85013666 - 5031439G07Rik protein_coding processed_transcript MGP_C3HHeJ_T0041367.1 MGP_C3HHeJ_G0021805.1 mouse_genomes_project 15 78795632 78805237 - MGP_C3HHeJ_P0041367 Sox10 protein_coding protein_coding MGP_C3HHeJ_T0009965.1 MGP_C3HHeJ_G0008098.1 mouse_genomes_project 15 72321670 72321738 - Mir151 miRNA miRNA MGP_C3HHeJ_T0011305.1 MGP_C3HHeJ_G0009438.1 mouse_genomes_project 15 104172110 104172208 + Gm27443 misc_RNA misc_RNA MGP_C3HHeJ_T0042566.1 MGP_C3HHeJ_G0022176.1 mouse_genomes_project 15 104721176 104768997 + MGP_C3HHeJ_P0042566 Nckap1l protein_coding protein_coding MGP_C3HHeJ_T0010017.1 MGP_C3HHeJ_G0008150.1 mouse_genomes_project 15 104197928 104198013 + Mir196a-2 miRNA miRNA MGP_C3HHeJ_T0041701.1 MGP_C3HHeJ_G0021897.1 mouse_genomes_project 15 83229924 83284203 - MGP_C3HHeJ_P0041701 Arfgap3 protein_coding protein_coding MGP_C3HHeJ_T0041702.1 MGP_C3HHeJ_G0021897.1 mouse_genomes_project 15 83230869 83284105 - MGP_C3HHeJ_P0041702 Arfgap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012959.1 MGP_C3HHeJ_G0011063.1 mouse_genomes_project 15 83993385 83993722 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041325.1 MGP_C3HHeJ_G0021795.1 mouse_genomes_project 15 78559833 78563173 + MGP_C3HHeJ_P0041325 Lgals1 protein_coding protein_coding MGP_C3HHeJ_T0009986.1 MGP_C3HHeJ_G0008119.1 mouse_genomes_project 15 82286698 82286758 + Gm27622 miRNA miRNA MGP_C3HHeJ_T0006725.1 MGP_C3HHeJ_G0005538.1 mouse_genomes_project 15 101470183 101479400 - 5330439K02Rik lincRNA lincRNA MGP_C3HHeJ_T0098999.1 MGP_C3HHeJ_G0037193.1 mouse_genomes_project 15 75361821 75361979 + Gm23027 snRNA snRNA MGP_C3HHeJ_T0041445.1 MGP_C3HHeJ_G0021826.1 mouse_genomes_project 15 79498111 79508428 - MGP_C3HHeJ_P0041445 Cbx6 protein_coding protein_coding MGP_C3HHeJ_T0041446.1 MGP_C3HHeJ_G0021826.1 mouse_genomes_project 15 79500348 79508454 - MGP_C3HHeJ_P0041446 Cbx6 protein_coding protein_coding MGP_C3HHeJ_T0041447.1 MGP_C3HHeJ_G0021826.1 mouse_genomes_project 15 79502843 79508015 - Cbx6 protein_coding processed_transcript MGP_C3HHeJ_T0041448.1 MGP_C3HHeJ_G0021826.1 mouse_genomes_project 15 79502984 79508497 - MGP_C3HHeJ_P0041448 Cbx6 protein_coding protein_coding MGP_C3HHeJ_T0041449.1 MGP_C3HHeJ_G0021826.1 mouse_genomes_project 15 79506788 79508542 - Cbx6 protein_coding processed_transcript MGP_C3HHeJ_T0041450.1 MGP_C3HHeJ_G0021826.1 mouse_genomes_project 15 79507461 79508491 - Cbx6 protein_coding processed_transcript MGP_C3HHeJ_T0042399.1 MGP_C3HHeJ_G0022123.1 mouse_genomes_project 15 102985921 102991274 - MGP_C3HHeJ_P0042399 Krt1 protein_coding protein_coding MGP_C3HHeJ_T0017222.1 MGP_C3HHeJ_G0015053.1 mouse_genomes_project 15 16127727 16256969 - C030047K22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0041843.1 MGP_C3HHeJ_G0021947.1 mouse_genomes_project 15 89233480 89256713 - MGP_C3HHeJ_P0041843 Mlc1 protein_coding protein_coding MGP_C3HHeJ_T0041844.1 MGP_C3HHeJ_G0021947.1 mouse_genomes_project 15 89233480 89256713 - MGP_C3HHeJ_P0041844 Mlc1 protein_coding protein_coding MGP_C3HHeJ_T0040497.1 MGP_C3HHeJ_G0021535.1 mouse_genomes_project 15 34214562 34258765 - MGP_C3HHeJ_P0040497 Rnf19a protein_coding protein_coding MGP_C3HHeJ_T0010004.1 MGP_C3HHeJ_G0008137.1 mouse_genomes_project 15 97031032 97031124 + Gm25397 miRNA miRNA MGP_C3HHeJ_T0012935.1 MGP_C3HHeJ_G0011039.1 mouse_genomes_project 15 41305469 41306481 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040203.1 MGP_C3HHeJ_G0021440.1 mouse_genomes_project 15 3403405 3459958 + MGP_C3HHeJ_P0040203 C9 protein_coding protein_coding MGP_C3HHeJ_T0040204.1 MGP_C3HHeJ_G0021440.1 mouse_genomes_project 15 3403450 3427231 + MGP_C3HHeJ_P0040204 C9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040205.1 MGP_C3HHeJ_G0021440.1 mouse_genomes_project 15 3450703 3452646 + C9 protein_coding retained_intron MGP_C3HHeJ_T0040206.1 MGP_C3HHeJ_G0021440.1 mouse_genomes_project 15 3451141 3459951 + MGP_C3HHeJ_P0040206 C9 protein_coding protein_coding MGP_C3HHeJ_T0006727.1 MGP_C3HHeJ_G0005540.1 mouse_genomes_project 15 102293378 102296304 - A330009N23Rik lincRNA lincRNA MGP_C3HHeJ_T0040322.1 MGP_C3HHeJ_G0021472.1 mouse_genomes_project 15 8112589 8116864 - MGP_C3HHeJ_P0040322 Rxfp3 protein_coding protein_coding MGP_C3HHeJ_T0040425.1 MGP_C3HHeJ_G0021508.1 mouse_genomes_project 15 29253815 29321283 - MGP_C3HHeJ_P0040425 March6 protein_coding protein_coding MGP_C3HHeJ_T0042263.1 MGP_C3HHeJ_G0022074.1 mouse_genomes_project 15 100613588 100616868 + MGP_C3HHeJ_P0042263 Cox14 protein_coding protein_coding MGP_C3HHeJ_T0040537.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 35983332 36021042 - MGP_C3HHeJ_P0040537 Rrm2b protein_coding protein_coding MGP_C3HHeJ_T0040538.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 35985785 36020830 - MGP_C3HHeJ_P0040538 Rrm2b protein_coding protein_coding MGP_C3HHeJ_T0040539.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 35985785 36020830 - MGP_C3HHeJ_P0040539 Rrm2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040540.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 35985785 36020830 - MGP_C3HHeJ_P0040540 Rrm2b protein_coding protein_coding MGP_C3HHeJ_T0040541.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 35992308 36020868 - MGP_C3HHeJ_P0040541 Rrm2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040542.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 36005195 36015086 - Rrm2b protein_coding retained_intron MGP_C3HHeJ_T0040543.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 36005300 36020788 - MGP_C3HHeJ_P0040543 Rrm2b protein_coding protein_coding MGP_C3HHeJ_T0040544.1 MGP_C3HHeJ_G0021545.1 mouse_genomes_project 15 36006899 36021257 - MGP_C3HHeJ_P0040544 Rrm2b protein_coding protein_coding MGP_C3HHeJ_T0100277.1 MGP_C3HHeJ_G0038471.1 mouse_genomes_project 15 99976988 99977094 - Gm25183 snoRNA snoRNA MGP_C3HHeJ_T0041440.1 MGP_C3HHeJ_G0021824.1 mouse_genomes_project 15 79461016 79479334 - MGP_C3HHeJ_P0041440 Nptxr protein_coding protein_coding MGP_C3HHeJ_T0041441.1 MGP_C3HHeJ_G0021824.1 mouse_genomes_project 15 79461017 79479391 - MGP_C3HHeJ_P0041441 Nptxr protein_coding protein_coding MGP_C3HHeJ_T0041442.1 MGP_C3HHeJ_G0021824.1 mouse_genomes_project 15 79463925 79465661 - Nptxr protein_coding processed_transcript MGP_C3HHeJ_T0006675.1 MGP_C3HHeJ_G0005509.1 mouse_genomes_project 15 39811351 39844620 - Gm26854 lincRNA lincRNA MGP_C3HHeJ_T0009967.1 MGP_C3HHeJ_G0008100.1 mouse_genomes_project 15 75541553 75541616 - Mir1942 miRNA miRNA MGP_C3HHeJ_T0040358.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9977504 10095434 + MGP_C3HHeJ_P0040358 Drosha protein_coding protein_coding MGP_C3HHeJ_T0040359.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9977552 10095387 + MGP_C3HHeJ_P0040359 Drosha protein_coding protein_coding MGP_C3HHeJ_T0040360.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9977579 9986581 + Drosha protein_coding processed_transcript MGP_C3HHeJ_T0040361.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9977579 9986581 + Drosha protein_coding processed_transcript MGP_C3HHeJ_T0040362.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9978815 9986499 + Drosha protein_coding processed_transcript MGP_C3HHeJ_T0040363.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9985788 10095266 + MGP_C3HHeJ_P0040363 Drosha protein_coding protein_coding MGP_C3HHeJ_T0040364.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 9989317 10064893 + Drosha protein_coding retained_intron MGP_C3HHeJ_T0040365.1 MGP_C3HHeJ_G0021483.1 mouse_genomes_project 15 10039427 10046721 + Drosha protein_coding processed_transcript MGP_C3HHeJ_T0003523.1 MGP_C3HHeJ_G0003197.1 mouse_genomes_project 15 3564956 3617994 - Gm2245 antisense antisense MGP_C3HHeJ_T0041872.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399366 89404716 - Hdac10 protein_coding processed_transcript MGP_C3HHeJ_T0041873.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399366 89404763 - MGP_C3HHeJ_P0041873 Hdac10 protein_coding protein_coding MGP_C3HHeJ_T0041874.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399368 89404724 - Hdac10 protein_coding retained_intron MGP_C3HHeJ_T0041875.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399368 89404714 - Hdac10 protein_coding retained_intron MGP_C3HHeJ_T0041876.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399370 89404742 - Hdac10 protein_coding retained_intron MGP_C3HHeJ_T0041877.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399631 89404511 - MGP_C3HHeJ_P0041877 Hdac10 protein_coding protein_coding MGP_C3HHeJ_T0041878.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89399733 89401748 - Hdac10 protein_coding processed_transcript MGP_C3HHeJ_T0041879.1 MGP_C3HHeJ_G0021953.1 mouse_genomes_project 15 89402041 89403553 - Hdac10 protein_coding processed_transcript MGP_C3HHeJ_T0040559.1 MGP_C3HHeJ_G0021553.1 mouse_genomes_project 15 37055336 37066229 + MGP_C3HHeJ_P0040559 Cthrc1 protein_coding protein_coding MGP_C3HHeJ_T0040560.1 MGP_C3HHeJ_G0021553.1 mouse_genomes_project 15 37055485 37060766 + Cthrc1 protein_coding processed_transcript MGP_C3HHeJ_T0040561.1 MGP_C3HHeJ_G0021553.1 mouse_genomes_project 15 37063176 37066231 + Cthrc1 protein_coding retained_intron MGP_C3HHeJ_T0099006.1 MGP_C3HHeJ_G0037200.1 mouse_genomes_project 15 83074423 83074574 + Rnu12 snRNA snRNA MGP_C3HHeJ_T0040426.1 MGP_C3HHeJ_G0021509.1 mouse_genomes_project 15 29375336 29396724 + MGP_C3HHeJ_P0040426 Cmbl protein_coding protein_coding MGP_C3HHeJ_T0040427.1 MGP_C3HHeJ_G0021509.1 mouse_genomes_project 15 29378733 29393792 + MGP_C3HHeJ_P0040427 Cmbl protein_coding protein_coding MGP_C3HHeJ_T0040428.1 MGP_C3HHeJ_G0021509.1 mouse_genomes_project 15 29389837 29398392 + MGP_C3HHeJ_P0040428 Cmbl protein_coding protein_coding MGP_C3HHeJ_T0009997.1 MGP_C3HHeJ_G0008130.1 mouse_genomes_project 15 85774684 85774769 + Mirlet7b miRNA miRNA MGP_C3HHeJ_T0017243.1 MGP_C3HHeJ_G0015062.1 mouse_genomes_project 15 72728606 72735108 + 1700010B13Rik processed_transcript lincRNA MGP_C3HHeJ_T0017244.1 MGP_C3HHeJ_G0015062.1 mouse_genomes_project 15 72728628 72730357 + 1700010B13Rik processed_transcript retained_intron MGP_C3HHeJ_T0042127.1 MGP_C3HHeJ_G0022026.1 mouse_genomes_project 15 99005018 99015610 - MGP_C3HHeJ_P0042127 Zfp641 protein_coding protein_coding MGP_C3HHeJ_T0042128.1 MGP_C3HHeJ_G0022026.1 mouse_genomes_project 15 99005552 99015563 - MGP_C3HHeJ_P0042128 Zfp641 protein_coding protein_coding MGP_C3HHeJ_T0012937.1 MGP_C3HHeJ_G0011041.1 mouse_genomes_project 15 44143235 44144915 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100234.1 MGP_C3HHeJ_G0038428.1 mouse_genomes_project 15 8448792 8448919 - Gm24844 snoRNA snoRNA MGP_C3HHeJ_T0042123.1 MGP_C3HHeJ_G0022022.1 mouse_genomes_project 15 98878609 98880938 + MGP_C3HHeJ_P0042123 Ccdc184 protein_coding protein_coding MGP_C3HHeJ_T0011288.1 MGP_C3HHeJ_G0009421.1 mouse_genomes_project 15 9084542 9084802 + Gm24074 misc_RNA misc_RNA MGP_C3HHeJ_T0009998.1 MGP_C3HHeJ_G0008131.1 mouse_genomes_project 15 87224693 87224788 + Gm23416 miRNA miRNA MGP_C3HHeJ_T0100275.1 MGP_C3HHeJ_G0038469.1 mouse_genomes_project 15 99297422 99297560 - Snora34 snoRNA snoRNA MGP_C3HHeJ_T0041799.1 MGP_C3HHeJ_G0021932.1 mouse_genomes_project 15 85910577 85939140 + MGP_C3HHeJ_P0041799 Ttc38 protein_coding protein_coding MGP_C3HHeJ_T0041800.1 MGP_C3HHeJ_G0021932.1 mouse_genomes_project 15 85910615 85938057 + Ttc38 protein_coding processed_transcript MGP_C3HHeJ_T0041801.1 MGP_C3HHeJ_G0021932.1 mouse_genomes_project 15 85910615 85922632 + MGP_C3HHeJ_P0041801 Ttc38 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040464.1 MGP_C3HHeJ_G0021522.1 mouse_genomes_project 15 32344762 32367604 + MGP_C3HHeJ_P0040464 Erich5 protein_coding protein_coding MGP_C3HHeJ_T0041666.1 MGP_C3HHeJ_G0021891.1 mouse_genomes_project 15 82915893 82940541 - MGP_C3HHeJ_P0041666 Nfam1 protein_coding protein_coding MGP_C3HHeJ_T0041667.1 MGP_C3HHeJ_G0021891.1 mouse_genomes_project 15 82917908 82951869 - MGP_C3HHeJ_P0041667 Nfam1 protein_coding protein_coding MGP_C3HHeJ_T0042019.1 MGP_C3HHeJ_G0021991.1 mouse_genomes_project 15 93877635 93980982 + MGP_C3HHeJ_P0042019 Pphln1 protein_coding protein_coding MGP_C3HHeJ_T0042020.1 MGP_C3HHeJ_G0021991.1 mouse_genomes_project 15 93877635 93980982 + MGP_C3HHeJ_P0042020 Pphln1 protein_coding protein_coding MGP_C3HHeJ_T0042021.1 MGP_C3HHeJ_G0021991.1 mouse_genomes_project 15 93877635 93980982 + MGP_C3HHeJ_P0042021 Pphln1 protein_coding protein_coding MGP_C3HHeJ_T0042022.1 MGP_C3HHeJ_G0021991.1 mouse_genomes_project 15 93877749 93980568 + MGP_C3HHeJ_P0042022 Pphln1 protein_coding protein_coding MGP_C3HHeJ_T0017240.1 MGP_C3HHeJ_G0015060.1 mouse_genomes_project 15 65868853 65906252 + Gm2895 processed_transcript processed_transcript MGP_C3HHeJ_T0042453.1 MGP_C3HHeJ_G0022144.1 mouse_genomes_project 15 103532816 103543171 - MGP_C3HHeJ_P0042453 Sp7 protein_coding protein_coding MGP_C3HHeJ_T0012916.1 MGP_C3HHeJ_G0011020.1 mouse_genomes_project 15 4319572 4320175 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042473.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103685343 103705649 - MGP_C3HHeJ_P0042473 Map3k12 protein_coding protein_coding MGP_C3HHeJ_T0042474.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103686482 103699537 - MGP_C3HHeJ_P0042474 Map3k12 protein_coding protein_coding MGP_C3HHeJ_T0042475.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103686732 103705877 - MGP_C3HHeJ_P0042475 Map3k12 protein_coding protein_coding MGP_C3HHeJ_T0042477.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103693075 103705817 - MGP_C3HHeJ_P0042477 Map3k12 protein_coding protein_coding MGP_C3HHeJ_T0042478.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103693137 103705788 - MGP_C3HHeJ_P0042478 Map3k12 protein_coding protein_coding MGP_C3HHeJ_T0042479.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103693174 103705629 - MGP_C3HHeJ_P0042479 Map3k12 protein_coding protein_coding MGP_C3HHeJ_T0042480.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103693823 103705625 - Map3k12 protein_coding processed_transcript MGP_C3HHeJ_T0042481.1 MGP_C3HHeJ_G0022149.1 mouse_genomes_project 15 103697940 103699629 - Map3k12 protein_coding processed_transcript MGP_C3HHeJ_T0040170.1 MGP_C3HHeJ_G0021430.1 mouse_genomes_project 15 1649849 1719046 + MGP_C3HHeJ_P0040170 C6 protein_coding protein_coding MGP_C3HHeJ_T0040171.1 MGP_C3HHeJ_G0021430.1 mouse_genomes_project 15 1649890 1678655 + MGP_C3HHeJ_P0040171 C6 protein_coding protein_coding MGP_C3HHeJ_T0040172.1 MGP_C3HHeJ_G0021430.1 mouse_genomes_project 15 1649890 1716388 + MGP_C3HHeJ_P0040172 C6 protein_coding protein_coding MGP_C3HHeJ_T0040173.1 MGP_C3HHeJ_G0021430.1 mouse_genomes_project 15 1649958 1735650 + MGP_C3HHeJ_P0040173 C6 protein_coding protein_coding MGP_C3HHeJ_T0040174.1 MGP_C3HHeJ_G0021430.1 mouse_genomes_project 15 1660913 1704416 + MGP_C3HHeJ_P0040174 C6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040175.1 MGP_C3HHeJ_G0021430.1 mouse_genomes_project 15 1684067 1704323 + C6 protein_coding processed_transcript MGP_C3HHeJ_T0040476.1 MGP_C3HHeJ_G0021526.1 mouse_genomes_project 15 32749265 32754222 + MGP_C3HHeJ_P0040476 Kcns2 protein_coding protein_coding MGP_C3HHeJ_T0040419.1 MGP_C3HHeJ_G0021506.1 mouse_genomes_project 15 29072239 29154769 - MGP_C3HHeJ_P0040419 Ankrd33b protein_coding protein_coding MGP_C3HHeJ_T0040420.1 MGP_C3HHeJ_G0021506.1 mouse_genomes_project 15 29072239 29154736 - MGP_C3HHeJ_P0040420 Ankrd33b protein_coding protein_coding MGP_C3HHeJ_T0040421.1 MGP_C3HHeJ_G0021506.1 mouse_genomes_project 15 29075558 29154542 - MGP_C3HHeJ_P0040421 Ankrd33b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040422.1 MGP_C3HHeJ_G0021506.1 mouse_genomes_project 15 29076467 29154736 - MGP_C3HHeJ_P0040422 Ankrd33b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040423.1 MGP_C3HHeJ_G0021506.1 mouse_genomes_project 15 29106312 29154578 - MGP_C3HHeJ_P0040423 Ankrd33b protein_coding protein_coding MGP_C3HHeJ_T0041647.1 MGP_C3HHeJ_G0021880.1 mouse_genomes_project 15 82157247 82161584 + Fam109b protein_coding processed_transcript MGP_C3HHeJ_T0041649.1 MGP_C3HHeJ_G0021880.1 mouse_genomes_project 15 82158854 82161598 + Fam109b protein_coding processed_transcript MGP_C3HHeJ_T0041650.1 MGP_C3HHeJ_G0021880.1 mouse_genomes_project 15 82159159 82164050 + MGP_C3HHeJ_P0041650 Fam109b protein_coding protein_coding MGP_C3HHeJ_T0041652.1 MGP_C3HHeJ_G0021880.1 mouse_genomes_project 15 82159480 82164037 + MGP_C3HHeJ_P0041652 Fam109b protein_coding protein_coding MGP_C3HHeJ_T0012920.1 MGP_C3HHeJ_G0011024.1 mouse_genomes_project 15 7580630 7581889 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041301.1 MGP_C3HHeJ_G0021784.1 mouse_genomes_project 15 78128767 78135055 - C1qtnf6 protein_coding processed_transcript MGP_C3HHeJ_T0041302.1 MGP_C3HHeJ_G0021784.1 mouse_genomes_project 15 78128767 78135055 - MGP_C3HHeJ_P0041302 C1qtnf6 protein_coding protein_coding MGP_C3HHeJ_T0041303.1 MGP_C3HHeJ_G0021784.1 mouse_genomes_project 15 78130544 78132749 - C1qtnf6 protein_coding processed_transcript MGP_C3HHeJ_T0042193.1 MGP_C3HHeJ_G0022051.1 mouse_genomes_project 15 99834664 99834979 + MGP_C3HHeJ_P0042193 Gm8973 protein_coding protein_coding MGP_C3HHeJ_T0009983.1 MGP_C3HHeJ_G0008116.1 mouse_genomes_project 15 82212024 82212084 - Mir7684 miRNA miRNA MGP_C3HHeJ_T0041985.1 MGP_C3HHeJ_G0021983.1 mouse_genomes_project 15 91628671 91945300 - MGP_C3HHeJ_P0041985 Slc2a13 protein_coding protein_coding MGP_C3HHeJ_T0041986.1 MGP_C3HHeJ_G0021983.1 mouse_genomes_project 15 91760537 91777282 - Slc2a13 protein_coding processed_transcript MGP_C3HHeJ_T0041987.1 MGP_C3HHeJ_G0021983.1 mouse_genomes_project 15 91912911 91945233 - Slc2a13 protein_coding processed_transcript MGP_C3HHeJ_T0040224.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4180706 4374177 - MGP_C3HHeJ_P0040224 Egflam protein_coding protein_coding MGP_C3HHeJ_T0040225.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4181164 4374224 - MGP_C3HHeJ_P0040225 Egflam protein_coding protein_coding MGP_C3HHeJ_T0040226.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4181169 4374268 - MGP_C3HHeJ_P0040226 Egflam protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040227.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4187831 4199736 - Egflam protein_coding retained_intron MGP_C3HHeJ_T0040228.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4209826 4374142 - Egflam protein_coding retained_intron MGP_C3HHeJ_T0040229.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4231841 4233099 - Egflam protein_coding processed_transcript MGP_C3HHeJ_T0040230.1 MGP_C3HHeJ_G0021445.1 mouse_genomes_project 15 4282483 4374134 - Egflam protein_coding retained_intron MGP_C3HHeJ_T0010008.1 MGP_C3HHeJ_G0008141.1 mouse_genomes_project 15 102266277 102266340 + Mir6962 miRNA miRNA MGP_C3HHeJ_T0098994.1 MGP_C3HHeJ_G0037188.1 mouse_genomes_project 15 64578438 64578627 + Gm23907 snRNA snRNA MGP_C3HHeJ_T0012965.1 MGP_C3HHeJ_G0011069.1 mouse_genomes_project 15 91901640 91903083 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017223.1 MGP_C3HHeJ_G0015054.1 mouse_genomes_project 15 35463684 35475170 - Gm15941 processed_transcript processed_transcript MGP_C3HHeJ_T0017224.1 MGP_C3HHeJ_G0015054.1 mouse_genomes_project 15 35464662 35471375 - Gm15941 processed_transcript processed_transcript MGP_C3HHeJ_T0017225.1 MGP_C3HHeJ_G0015054.1 mouse_genomes_project 15 35464853 35474654 - Gm15941 processed_transcript processed_transcript MGP_C3HHeJ_T0017226.1 MGP_C3HHeJ_G0015054.1 mouse_genomes_project 15 35464969 35475168 - Gm15941 processed_transcript processed_transcript MGP_C3HHeJ_T0017227.1 MGP_C3HHeJ_G0015054.1 mouse_genomes_project 15 35465122 35475159 - Gm15941 processed_transcript processed_transcript MGP_C3HHeJ_T0017228.1 MGP_C3HHeJ_G0015054.1 mouse_genomes_project 15 35469902 35475920 - Gm15941 processed_transcript processed_transcript MGP_C3HHeJ_T0012945.1 MGP_C3HHeJ_G0011049.1 mouse_genomes_project 15 61719907 61721048 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041022.1 MGP_C3HHeJ_G0021712.1 mouse_genomes_project 15 75372650 75395277 - MGP_C3HHeJ_P0041022 Scrib protein_coding protein_coding MGP_C3HHeJ_T0041023.1 MGP_C3HHeJ_G0021712.1 mouse_genomes_project 15 75372650 75395247 - MGP_C3HHeJ_P0041023 Scrib protein_coding protein_coding MGP_C3HHeJ_T0041024.1 MGP_C3HHeJ_G0021712.1 mouse_genomes_project 15 75372650 75395247 - MGP_C3HHeJ_P0041024 Scrib protein_coding protein_coding MGP_C3HHeJ_T0041025.1 MGP_C3HHeJ_G0021712.1 mouse_genomes_project 15 75372650 75388212 - MGP_C3HHeJ_P0041025 Scrib protein_coding protein_coding MGP_C3HHeJ_T0041026.1 MGP_C3HHeJ_G0021712.1 mouse_genomes_project 15 75374432 75376279 - MGP_C3HHeJ_P0041026 Scrib protein_coding protein_coding MGP_C3HHeJ_T0041027.1 MGP_C3HHeJ_G0021712.1 mouse_genomes_project 15 75374695 75376279 - MGP_C3HHeJ_P0041027 Scrib protein_coding protein_coding MGP_C3HHeJ_T0098973.1 MGP_C3HHeJ_G0037167.1 mouse_genomes_project 15 21224360 21224518 - Gm23980 snRNA snRNA MGP_C3HHeJ_T0041537.1 MGP_C3HHeJ_G0021847.1 mouse_genomes_project 15 81053825 81098654 - MGP_C3HHeJ_P0041537 Slc25a17 protein_coding protein_coding MGP_C3HHeJ_T0042139.1 MGP_C3HHeJ_G0022030.1 mouse_genomes_project 15 99189870 99197111 + MGP_C3HHeJ_P0042139 Olfr282 protein_coding protein_coding MGP_C3HHeJ_T0042140.1 MGP_C3HHeJ_G0022030.1 mouse_genomes_project 15 99196665 99197593 + MGP_C3HHeJ_P0042140 Olfr282 protein_coding protein_coding MGP_C3HHeJ_T0098998.1 MGP_C3HHeJ_G0037192.1 mouse_genomes_project 15 72817422 72817549 + Gm22106 snRNA snRNA MGP_C3HHeJ_T0040981.1 MGP_C3HHeJ_G0021701.1 mouse_genomes_project 15 75212720 75216238 - MGP_C3HHeJ_P0040981 Naprt protein_coding protein_coding MGP_C3HHeJ_T0041711.1 MGP_C3HHeJ_G0021902.1 mouse_genomes_project 15 83508822 83521272 + MGP_C3HHeJ_P0041711 Tspo protein_coding protein_coding MGP_C3HHeJ_T0012940.1 MGP_C3HHeJ_G0011044.1 mouse_genomes_project 15 52775973 52776378 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040733.1 MGP_C3HHeJ_G0021627.1 mouse_genomes_project 15 58670772 58672525 - MGP_C3HHeJ_P0040733 4933412E24Rik protein_coding protein_coding MGP_C3HHeJ_T0012921.1 MGP_C3HHeJ_G0011025.1 mouse_genomes_project 15 10640024 10640807 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040947.1 MGP_C3HHeJ_G0021690.1 mouse_genomes_project 15 74508685 74512238 + MGP_C3HHeJ_P0040947 protein_coding protein_coding MGP_C3HHeJ_T0040948.1 MGP_C3HHeJ_G0021690.1 mouse_genomes_project 15 74508685 74512690 + MGP_C3HHeJ_P0040948 protein_coding protein_coding MGP_C3HHeJ_T0040949.1 MGP_C3HHeJ_G0021690.1 mouse_genomes_project 15 74508694 74512182 + MGP_C3HHeJ_P0040949 protein_coding protein_coding MGP_C3HHeJ_T0041591.1 MGP_C3HHeJ_G0021859.1 mouse_genomes_project 15 81619963 81620320 - MGP_C3HHeJ_P0041591 Gm8444 protein_coding protein_coding MGP_C3HHeJ_T0009957.1 MGP_C3HHeJ_G0008090.1 mouse_genomes_project 15 38171128 38171199 - Gm25958 miRNA miRNA MGP_C3HHeJ_T0099004.1 MGP_C3HHeJ_G0037198.1 mouse_genomes_project 15 80769701 80769852 + Gm25131 snRNA snRNA MGP_C3HHeJ_T0011291.1 MGP_C3HHeJ_G0009424.1 mouse_genomes_project 15 41312959 41313255 - Gm22037 misc_RNA misc_RNA MGP_C3HHeJ_T0010019.1 MGP_C3HHeJ_G0008152.1 mouse_genomes_project 15 104541977 104542074 + Mir148b miRNA miRNA MGP_C3HHeJ_T0042032.1 MGP_C3HHeJ_G0021995.1 mouse_genomes_project 15 95080057 95108373 + MGP_C3HHeJ_P0042032 Irak4 protein_coding protein_coding MGP_C3HHeJ_T0042033.1 MGP_C3HHeJ_G0021995.1 mouse_genomes_project 15 95080067 95095949 + Irak4 protein_coding retained_intron MGP_C3HHeJ_T0042034.1 MGP_C3HHeJ_G0021995.1 mouse_genomes_project 15 95080086 95122835 + MGP_C3HHeJ_P0042034 Irak4 protein_coding protein_coding MGP_C3HHeJ_T0042035.1 MGP_C3HHeJ_G0021995.1 mouse_genomes_project 15 95080200 95107140 + MGP_C3HHeJ_P0042035 Irak4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042041.1 MGP_C3HHeJ_G0021998.1 mouse_genomes_project 15 95785215 96109371 - MGP_C3HHeJ_P0042041 Nell2 protein_coding protein_coding MGP_C3HHeJ_T0042042.1 MGP_C3HHeJ_G0021998.1 mouse_genomes_project 15 95785705 96108917 - MGP_C3HHeJ_P0042042 Nell2 protein_coding protein_coding MGP_C3HHeJ_T0041779.1 MGP_C3HHeJ_G0021925.1 mouse_genomes_project 15 85231578 85320092 + MGP_C3HHeJ_P0041779 Fbln1 protein_coding protein_coding MGP_C3HHeJ_T0041780.1 MGP_C3HHeJ_G0021925.1 mouse_genomes_project 15 85231634 85284448 + MGP_C3HHeJ_P0041780 Fbln1 protein_coding protein_coding MGP_C3HHeJ_T0041781.1 MGP_C3HHeJ_G0021925.1 mouse_genomes_project 15 85295992 85298011 + Fbln1 protein_coding processed_transcript MGP_C3HHeJ_T0040441.1 MGP_C3HHeJ_G0021515.1 mouse_genomes_project 15 30961320 31483376 + MGP_C3HHeJ_P0040441 Cpq protein_coding protein_coding MGP_C3HHeJ_T0042383.1 MGP_C3HHeJ_G0022108.1 mouse_genomes_project 15 102530509 102536668 + MGP_C3HHeJ_P0042383 Krt88 protein_coding protein_coding MGP_C3HHeJ_T0041742.1 MGP_C3HHeJ_G0021911.1 mouse_genomes_project 15 84208957 84302029 + MGP_C3HHeJ_P0041742 Parvb protein_coding protein_coding MGP_C3HHeJ_T0041743.1 MGP_C3HHeJ_G0021911.1 mouse_genomes_project 15 84208980 84251997 + MGP_C3HHeJ_P0041743 Parvb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041744.1 MGP_C3HHeJ_G0021911.1 mouse_genomes_project 15 84237799 84273566 + Parvb protein_coding processed_transcript MGP_C3HHeJ_T0042200.1 MGP_C3HHeJ_G0022056.1 mouse_genomes_project 15 99969314 100062085 + MGP_C3HHeJ_P0042200 Spats2 protein_coding protein_coding MGP_C3HHeJ_T0040982.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75216552 75231106 - MGP_C3HHeJ_P0040982 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040983.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75216556 75231091 - MGP_C3HHeJ_P0040983 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040984.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75216556 75231085 - MGP_C3HHeJ_P0040984 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040985.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217244 75231057 - MGP_C3HHeJ_P0040985 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040986.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217244 75231048 - MGP_C3HHeJ_P0040986 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040987.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217244 75225307 - MGP_C3HHeJ_P0040987 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040988.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217246 75231086 - MGP_C3HHeJ_P0040988 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040989.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217246 75231070 - MGP_C3HHeJ_P0040989 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040990.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217248 75218497 - Eef1d protein_coding retained_intron MGP_C3HHeJ_T0040991.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75217560 75231080 - MGP_C3HHeJ_P0040991 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040992.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75218030 75231307 - MGP_C3HHeJ_P0040992 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040993.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75218037 75231070 - MGP_C3HHeJ_P0040993 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040994.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75218150 75231298 - MGP_C3HHeJ_P0040994 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040995.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75218432 75223006 - Eef1d protein_coding retained_intron MGP_C3HHeJ_T0040996.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75219862 75231070 - Eef1d protein_coding retained_intron MGP_C3HHeJ_T0040997.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75224873 75231298 - MGP_C3HHeJ_P0040997 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040998.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75225012 75227114 - MGP_C3HHeJ_P0040998 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0040999.1 MGP_C3HHeJ_G0021702.1 mouse_genomes_project 15 75225256 75231042 - MGP_C3HHeJ_P0040999 Eef1d protein_coding protein_coding MGP_C3HHeJ_T0042405.1 MGP_C3HHeJ_G0022128.1 mouse_genomes_project 15 103149622 103157185 - MGP_C3HHeJ_P0042405 Krt8 protein_coding protein_coding MGP_C3HHeJ_T0009968.1 MGP_C3HHeJ_G0008101.1 mouse_genomes_project 15 75575533 75575601 + Mir6953 miRNA miRNA MGP_C3HHeJ_T0042401.1 MGP_C3HHeJ_G0022124.1 mouse_genomes_project 15 103027596 103036166 - MGP_C3HHeJ_P0042401 Krt76 protein_coding protein_coding MGP_C3HHeJ_T0040533.1 MGP_C3HHeJ_G0021544.1 mouse_genomes_project 15 35468122 35483148 + MGP_C3HHeJ_P0040533 4930447A16Rik protein_coding protein_coding MGP_C3HHeJ_T0040945.1 MGP_C3HHeJ_G0021688.1 mouse_genomes_project 15 74508683 74512687 + MGP_C3HHeJ_P0040945 protein_coding protein_coding MGP_C3HHeJ_T0040950.1 MGP_C3HHeJ_G0021688.1 mouse_genomes_project 15 74508716 74512402 + MGP_C3HHeJ_P0040950 protein_coding protein_coding MGP_C3HHeJ_T0040951.1 MGP_C3HHeJ_G0021688.1 mouse_genomes_project 15 74509028 74512690 + protein_coding retained_intron MGP_C3HHeJ_T0040952.1 MGP_C3HHeJ_G0021688.1 mouse_genomes_project 15 74509116 74512516 + MGP_C3HHeJ_P0040952 protein_coding protein_coding MGP_C3HHeJ_T0040240.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5666554 5750602 - MGP_C3HHeJ_P0040240 Slc1a3 protein_coding protein_coding MGP_C3HHeJ_T0040241.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5667157 5685940 - Slc1a3 protein_coding retained_intron MGP_C3HHeJ_T0040242.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5676860 5677857 - Slc1a3 protein_coding retained_intron MGP_C3HHeJ_T0040243.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5714290 5750254 - Slc1a3 protein_coding processed_transcript MGP_C3HHeJ_T0040244.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5720860 5750247 - MGP_C3HHeJ_P0040244 Slc1a3 protein_coding protein_coding MGP_C3HHeJ_T0040245.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5722742 5750334 - Slc1a3 protein_coding retained_intron MGP_C3HHeJ_T0040246.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5747447 5750319 - Slc1a3 protein_coding retained_intron MGP_C3HHeJ_T0040247.1 MGP_C3HHeJ_G0021451.1 mouse_genomes_project 15 5748580 5749426 - Slc1a3 protein_coding processed_transcript MGP_C3HHeJ_T0012919.1 MGP_C3HHeJ_G0011023.1 mouse_genomes_project 15 5979457 5984701 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040915.1 MGP_C3HHeJ_G0021679.1 mouse_genomes_project 15 73946669 73955197 + MGP_C3HHeJ_P0040915 protein_coding protein_coding MGP_C3HHeJ_T0006713.1 MGP_C3HHeJ_G0005531.1 mouse_genomes_project 15 91969157 91981665 + lincRNA lincRNA MGP_C3HHeJ_T0040640.1 MGP_C3HHeJ_G0021589.1 mouse_genomes_project 15 53032715 53066223 + MGP_C3HHeJ_P0040640 Mal2 protein_coding protein_coding MGP_C3HHeJ_T0040429.1 MGP_C3HHeJ_G0021510.1 mouse_genomes_project 15 29399067 29410115 - MGP_C3HHeJ_P0040429 Cct5 protein_coding protein_coding MGP_C3HHeJ_T0040430.1 MGP_C3HHeJ_G0021510.1 mouse_genomes_project 15 29400249 29401329 - Cct5 protein_coding retained_intron MGP_C3HHeJ_T0040431.1 MGP_C3HHeJ_G0021510.1 mouse_genomes_project 15 29401712 29402796 - Cct5 protein_coding retained_intron MGP_C3HHeJ_T0040432.1 MGP_C3HHeJ_G0021510.1 mouse_genomes_project 15 29402612 29409807 - MGP_C3HHeJ_P0040432 Cct5 protein_coding protein_coding MGP_C3HHeJ_T0040433.1 MGP_C3HHeJ_G0021510.1 mouse_genomes_project 15 29403708 29410008 - Cct5 protein_coding retained_intron MGP_C3HHeJ_T0000914.1 MGP_C3HHeJ_G0000854.1 mouse_genomes_project 15 97331802 97332267 + TEC TEC MGP_C3HHeJ_T0041017.1 MGP_C3HHeJ_G0021711.1 mouse_genomes_project 15 75332433 75360602 + MGP_C3HHeJ_P0041017 protein_coding protein_coding MGP_C3HHeJ_T0041018.1 MGP_C3HHeJ_G0021711.1 mouse_genomes_project 15 75337077 75360081 + MGP_C3HHeJ_P0041018 protein_coding protein_coding MGP_C3HHeJ_T0041019.1 MGP_C3HHeJ_G0021711.1 mouse_genomes_project 15 75359614 75363274 + protein_coding processed_transcript MGP_C3HHeJ_T0041020.1 MGP_C3HHeJ_G0021711.1 mouse_genomes_project 15 75360313 75371604 + protein_coding processed_transcript MGP_C3HHeJ_T0041021.1 MGP_C3HHeJ_G0021711.1 mouse_genomes_project 15 75362008 75363335 + protein_coding retained_intron MGP_C3HHeJ_T0040418.1 MGP_C3HHeJ_G0021505.1 mouse_genomes_project 15 29055989 29056406 + MGP_C3HHeJ_P0040418 Fam136b-ps protein_coding protein_coding MGP_C3HHeJ_T0040602.1 MGP_C3HHeJ_G0021575.1 mouse_genomes_project 15 43226070 43234694 - MGP_C3HHeJ_P0040602 Kcnv1 protein_coding protein_coding MGP_C3HHeJ_T0006701.1 MGP_C3HHeJ_G0005523.1 mouse_genomes_project 15 79416665 79432068 + Gm16576 lincRNA lincRNA MGP_C3HHeJ_T0041318.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78529386 78549962 + Sh3bp1 protein_coding processed_transcript MGP_C3HHeJ_T0041319.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78529486 78542712 + MGP_C3HHeJ_P0041319 Sh3bp1 protein_coding protein_coding MGP_C3HHeJ_T0041320.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78529486 78542716 + MGP_C3HHeJ_P0041320 Sh3bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041321.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78529486 78542716 + MGP_C3HHeJ_P0041321 Sh3bp1 protein_coding protein_coding MGP_C3HHeJ_T0041322.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78529486 78542716 + MGP_C3HHeJ_P0041322 Sh3bp1 protein_coding protein_coding MGP_C3HHeJ_T0041323.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78529486 78542716 + MGP_C3HHeJ_P0041323 Sh3bp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041324.1 MGP_C3HHeJ_G0021794.1 mouse_genomes_project 15 78544594 78550447 + MGP_C3HHeJ_P0041324 Sh3bp1 protein_coding protein_coding MGP_C3HHeJ_T0041786.1 MGP_C3HHeJ_G0021929.1 mouse_genomes_project 15 85803113 85849046 + Ppara protein_coding processed_transcript MGP_C3HHeJ_T0041787.1 MGP_C3HHeJ_G0021929.1 mouse_genomes_project 15 85803694 85876505 + MGP_C3HHeJ_P0041787 Ppara protein_coding protein_coding MGP_C3HHeJ_T0041788.1 MGP_C3HHeJ_G0021929.1 mouse_genomes_project 15 85803769 85849141 + Ppara protein_coding processed_transcript MGP_C3HHeJ_T0041789.1 MGP_C3HHeJ_G0021929.1 mouse_genomes_project 15 85803906 85877166 + MGP_C3HHeJ_P0041789 Ppara protein_coding protein_coding MGP_C3HHeJ_T0041790.1 MGP_C3HHeJ_G0021929.1 mouse_genomes_project 15 85804261 85876090 + MGP_C3HHeJ_P0041790 Ppara protein_coding protein_coding MGP_C3HHeJ_T0041791.1 MGP_C3HHeJ_G0021929.1 mouse_genomes_project 15 85843562 85849181 + Ppara protein_coding processed_transcript MGP_C3HHeJ_T0041218.1 MGP_C3HHeJ_G0021754.1 mouse_genomes_project 15 76251777 76253173 + MGP_C3HHeJ_P0041218 Commd5 protein_coding protein_coding MGP_C3HHeJ_T0041219.1 MGP_C3HHeJ_G0021754.1 mouse_genomes_project 15 76251803 76253059 + MGP_C3HHeJ_P0041219 Commd5 protein_coding protein_coding MGP_C3HHeJ_T0006712.1 MGP_C3HHeJ_G0005530.1 mouse_genomes_project 15 89495608 89500066 - Gm26798 lincRNA lincRNA MGP_C3HHeJ_T0006666.1 MGP_C3HHeJ_G0005500.1 mouse_genomes_project 15 30066340 30066991 + 4930518I17Rik lincRNA lincRNA MGP_C3HHeJ_T0009961.1 MGP_C3HHeJ_G0008094.1 mouse_genomes_project 15 61375286 61375356 - Gm24810 miRNA miRNA MGP_C3HHeJ_T0040848.1 MGP_C3HHeJ_G0021657.1 mouse_genomes_project 15 72143787 72148015 + MGP_C3HHeJ_P0040848 Chrac1 protein_coding protein_coding MGP_C3HHeJ_T0040849.1 MGP_C3HHeJ_G0021657.1 mouse_genomes_project 15 72143787 72151493 + MGP_C3HHeJ_P0040849 Chrac1 protein_coding protein_coding MGP_C3HHeJ_T0040850.1 MGP_C3HHeJ_G0021657.1 mouse_genomes_project 15 72143807 72148714 + Chrac1 protein_coding retained_intron MGP_C3HHeJ_T0003548.1 MGP_C3HHeJ_G0003215.1 mouse_genomes_project 15 81154034 81157663 - Gm17025 antisense antisense MGP_C3HHeJ_T0041116.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75715097 75776212 + Mroh1 protein_coding processed_transcript MGP_C3HHeJ_T0041117.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75715349 75745253 + Mroh1 protein_coding processed_transcript MGP_C3HHeJ_T0041118.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75715349 75789498 + MGP_C3HHeJ_P0041118 Mroh1 protein_coding protein_coding MGP_C3HHeJ_T0041119.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75715359 75789495 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0041120.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75715368 75737837 + MGP_C3HHeJ_P0041120 Mroh1 protein_coding protein_coding MGP_C3HHeJ_T0041121.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75715389 75745252 + MGP_C3HHeJ_P0041121 Mroh1 protein_coding protein_coding MGP_C3HHeJ_T0041122.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75725700 75776212 + MGP_C3HHeJ_P0041122 Mroh1 protein_coding protein_coding MGP_C3HHeJ_T0041123.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75727985 75789438 + MGP_C3HHeJ_P0041123 Mroh1 protein_coding protein_coding MGP_C3HHeJ_T0041124.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75764367 75789498 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0041125.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75765124 75770377 + MGP_C3HHeJ_P0041125 Mroh1 protein_coding protein_coding MGP_C3HHeJ_T0041126.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75777526 75783301 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0041127.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75786123 75787680 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0041128.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75787087 75787845 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0041129.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75788273 75788844 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0041130.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75788321 75789498 + MGP_C3HHeJ_P0041130 Mroh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041131.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75788598 75789498 + MGP_C3HHeJ_P0041131 Mroh1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041132.1 MGP_C3HHeJ_G0021730.1 mouse_genomes_project 15 75788613 75789497 + Mroh1 protein_coding retained_intron MGP_C3HHeJ_T0042258.1 MGP_C3HHeJ_G0022071.1 mouse_genomes_project 15 100586917 100591280 - MGP_C3HHeJ_P0042258 Gm17349 protein_coding protein_coding MGP_C3HHeJ_T0040629.1 MGP_C3HHeJ_G0021584.1 mouse_genomes_project 15 51503609 51799705 - MGP_C3HHeJ_P0040629 Ext1 protein_coding protein_coding MGP_C3HHeJ_T0040630.1 MGP_C3HHeJ_G0021584.1 mouse_genomes_project 15 51508237 51799205 - MGP_C3HHeJ_P0040630 Ext1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040631.1 MGP_C3HHeJ_G0021584.1 mouse_genomes_project 15 51522695 51644144 - MGP_C3HHeJ_P0040631 Ext1 protein_coding protein_coding MGP_C3HHeJ_T0040632.1 MGP_C3HHeJ_G0021584.1 mouse_genomes_project 15 51531717 51552276 - Ext1 protein_coding retained_intron MGP_C3HHeJ_T0040724.1 MGP_C3HHeJ_G0021623.1 mouse_genomes_project 15 57939104 57952985 + Sqle protein_coding retained_intron MGP_C3HHeJ_T0040725.1 MGP_C3HHeJ_G0021623.1 mouse_genomes_project 15 57939108 57955263 + MGP_C3HHeJ_P0040725 Sqle protein_coding protein_coding MGP_C3HHeJ_T0040726.1 MGP_C3HHeJ_G0021623.1 mouse_genomes_project 15 57939134 57955263 + MGP_C3HHeJ_P0040726 Sqle protein_coding protein_coding MGP_C3HHeJ_T0040727.1 MGP_C3HHeJ_G0021623.1 mouse_genomes_project 15 57949570 57951226 + Sqle protein_coding retained_intron MGP_C3HHeJ_T0041776.1 MGP_C3HHeJ_G0021922.1 mouse_genomes_project 15 85064120 85092221 + MGP_C3HHeJ_P0041776 Fam118a protein_coding protein_coding MGP_C3HHeJ_T0003559.1 MGP_C3HHeJ_G0003224.1 mouse_genomes_project 15 99355430 99358704 + 9330020H09Rik antisense antisense MGP_C3HHeJ_T0042529.1 MGP_C3HHeJ_G0022164.1 mouse_genomes_project 15 104225572 104238071 + Hoxc6 protein_coding processed_transcript MGP_C3HHeJ_T0042530.1 MGP_C3HHeJ_G0022164.1 mouse_genomes_project 15 104227845 104237309 + Hoxc6 protein_coding processed_transcript MGP_C3HHeJ_T0042531.1 MGP_C3HHeJ_G0022164.1 mouse_genomes_project 15 104236875 104239184 + MGP_C3HHeJ_P0042531 Hoxc6 protein_coding protein_coding MGP_C3HHeJ_T0041414.1 MGP_C3HHeJ_G0021814.1 mouse_genomes_project 15 79181266 79193627 + MGP_C3HHeJ_P0041414 Kdelr3 protein_coding protein_coding MGP_C3HHeJ_T0040320.1 MGP_C3HHeJ_G0021470.1 mouse_genomes_project 15 8055551 8075686 + MGP_C3HHeJ_P0040320 Amacr protein_coding protein_coding MGP_C3HHeJ_T0041223.1 MGP_C3HHeJ_G0021757.1 mouse_genomes_project 15 76305860 76308079 + MGP_C3HHeJ_P0041223 1110038F14Rik protein_coding protein_coding MGP_C3HHeJ_T0009962.1 MGP_C3HHeJ_G0008095.1 mouse_genomes_project 15 67248050 67248146 - Mir30b miRNA miRNA MGP_C3HHeJ_T0041473.1 MGP_C3HHeJ_G0021830.1 mouse_genomes_project 15 79764014 79770960 - Rpl3 protein_coding retained_intron MGP_C3HHeJ_T0041474.1 MGP_C3HHeJ_G0021830.1 mouse_genomes_project 15 79764015 79771730 - Rpl3 protein_coding retained_intron MGP_C3HHeJ_T0041475.1 MGP_C3HHeJ_G0021830.1 mouse_genomes_project 15 79764016 79771730 - MGP_C3HHeJ_P0041475 Rpl3 protein_coding protein_coding MGP_C3HHeJ_T0041476.1 MGP_C3HHeJ_G0021830.1 mouse_genomes_project 15 79767419 79771710 - MGP_C3HHeJ_P0041476 Rpl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041477.1 MGP_C3HHeJ_G0021830.1 mouse_genomes_project 15 79767904 79780303 - MGP_C3HHeJ_P0041477 Rpl3 protein_coding protein_coding MGP_C3HHeJ_T0041478.1 MGP_C3HHeJ_G0021830.1 mouse_genomes_project 15 79768991 79771714 - Rpl3 protein_coding retained_intron MGP_C3HHeJ_T0042173.1 MGP_C3HHeJ_G0022043.1 mouse_genomes_project 15 99584482 99590849 - MGP_C3HHeJ_P0042173 Wnt10b protein_coding protein_coding MGP_C3HHeJ_T0042174.1 MGP_C3HHeJ_G0022043.1 mouse_genomes_project 15 99584929 99589964 - MGP_C3HHeJ_P0042174 Wnt10b protein_coding protein_coding MGP_C3HHeJ_T0011292.1 MGP_C3HHeJ_G0009425.1 mouse_genomes_project 15 57154394 57154695 + Gm23789 misc_RNA misc_RNA MGP_C3HHeJ_T0006679.1 MGP_C3HHeJ_G0005513.1 mouse_genomes_project 15 44489533 44543760 + 1700022A22Rik lincRNA lincRNA MGP_C3HHeJ_T0006680.1 MGP_C3HHeJ_G0005513.1 mouse_genomes_project 15 44489545 44525562 + 1700022A22Rik lincRNA lincRNA MGP_C3HHeJ_T0006681.1 MGP_C3HHeJ_G0005513.1 mouse_genomes_project 15 44489559 44543809 + 1700022A22Rik lincRNA lincRNA MGP_C3HHeJ_T0040977.1 MGP_C3HHeJ_G0021697.1 mouse_genomes_project 15 75057065 75058145 - MGP_C3HHeJ_P0040977 Mafa protein_coding protein_coding MGP_C3HHeJ_T0040590.1 MGP_C3HHeJ_G0021568.1 mouse_genomes_project 15 41957992 41961325 - MGP_C3HHeJ_P0040590 Tmem74 protein_coding protein_coding MGP_C3HHeJ_T0042036.1 MGP_C3HHeJ_G0021996.1 mouse_genomes_project 15 95119003 95130919 - MGP_C3HHeJ_P0042036 Twf1 protein_coding protein_coding MGP_C3HHeJ_T0042037.1 MGP_C3HHeJ_G0021996.1 mouse_genomes_project 15 95120685 95126497 - Twf1 protein_coding processed_transcript MGP_C3HHeJ_T0042038.1 MGP_C3HHeJ_G0021996.1 mouse_genomes_project 15 95122039 95122406 - Twf1 protein_coding retained_intron MGP_C3HHeJ_T0042039.1 MGP_C3HHeJ_G0021996.1 mouse_genomes_project 15 95125462 95130929 - MGP_C3HHeJ_P0042039 Twf1 protein_coding protein_coding MGP_C3HHeJ_T0041315.1 MGP_C3HHeJ_G0021791.1 mouse_genomes_project 15 78468876 78477096 + MGP_C3HHeJ_P0041315 Cdc42ep1 protein_coding protein_coding MGP_C3HHeJ_T0042063.1 MGP_C3HHeJ_G0022011.1 mouse_genomes_project 15 98371724 98402316 - MGP_C3HHeJ_P0042063 Rpap3 protein_coding protein_coding MGP_C3HHeJ_T0040690.1 MGP_C3HHeJ_G0021605.1 mouse_genomes_project 15 56543343 56571250 + MGP_C3HHeJ_P0040690 Fam83a protein_coding protein_coding MGP_C3HHeJ_T0040691.1 MGP_C3HHeJ_G0021605.1 mouse_genomes_project 15 56543834 56553509 + MGP_C3HHeJ_P0040691 Fam83a protein_coding protein_coding MGP_C3HHeJ_T0040692.1 MGP_C3HHeJ_G0021605.1 mouse_genomes_project 15 56562372 56570288 + Fam83a protein_coding processed_transcript MGP_C3HHeJ_T0040838.1 MGP_C3HHeJ_G0021653.1 mouse_genomes_project 15 70450893 70728167 - MGP_C3HHeJ_P0040838 Fam135b protein_coding protein_coding MGP_C3HHeJ_T0041015.1 MGP_C3HHeJ_G0021710.1 mouse_genomes_project 15 75323639 75336824 - MGP_C3HHeJ_P0041015 Fam83h protein_coding protein_coding MGP_C3HHeJ_T0041016.1 MGP_C3HHeJ_G0021710.1 mouse_genomes_project 15 75323639 75332044 - MGP_C3HHeJ_P0041016 Fam83h protein_coding protein_coding MGP_C3HHeJ_T0040593.1 MGP_C3HHeJ_G0021570.1 mouse_genomes_project 15 42484327 42538799 - MGP_C3HHeJ_P0040593 Nudcd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040594.1 MGP_C3HHeJ_G0021570.1 mouse_genomes_project 15 42484330 42539329 - MGP_C3HHeJ_P0040594 Nudcd1 protein_coding protein_coding MGP_C3HHeJ_T0041662.1 MGP_C3HHeJ_G0021888.1 mouse_genomes_project 15 82586414 82587780 - MGP_C3HHeJ_P0041662 Cyp2d37-ps protein_coding protein_coding MGP_C3HHeJ_T0040900.1 MGP_C3HHeJ_G0021670.1 mouse_genomes_project 15 73832355 73834586 + MGP_C3HHeJ_P0040900 Psca protein_coding protein_coding MGP_C3HHeJ_T0042512.1 MGP_C3HHeJ_G0022155.1 mouse_genomes_project 15 103861481 103869739 - MGP_C3HHeJ_P0042512 Atp5g2 protein_coding protein_coding MGP_C3HHeJ_T0042513.1 MGP_C3HHeJ_G0022155.1 mouse_genomes_project 15 103861631 103866362 - MGP_C3HHeJ_P0042513 Atp5g2 protein_coding protein_coding MGP_C3HHeJ_T0042514.1 MGP_C3HHeJ_G0022155.1 mouse_genomes_project 15 103863361 103866356 - MGP_C3HHeJ_P0042514 Atp5g2 protein_coding protein_coding MGP_C3HHeJ_T0042515.1 MGP_C3HHeJ_G0022155.1 mouse_genomes_project 15 103864423 103870965 - MGP_C3HHeJ_P0042515 Atp5g2 protein_coding protein_coding MGP_C3HHeJ_T0042240.1 MGP_C3HHeJ_G0022067.1 mouse_genomes_project 15 100466806 100472102 + MGP_C3HHeJ_P0042240 Aqp5 protein_coding protein_coding MGP_C3HHeJ_T0042241.1 MGP_C3HHeJ_G0022067.1 mouse_genomes_project 15 100468521 100472323 + MGP_C3HHeJ_P0042241 Aqp5 protein_coding protein_coding MGP_C3HHeJ_T0042385.1 MGP_C3HHeJ_G0022110.1 mouse_genomes_project 15 102562073 102572641 + MGP_C3HHeJ_P0042385 protein_coding protein_coding MGP_C3HHeJ_T0041764.1 MGP_C3HHeJ_G0021917.1 mouse_genomes_project 15 84802974 84875021 - MGP_C3HHeJ_P0041764 Phf21b protein_coding protein_coding MGP_C3HHeJ_T0041765.1 MGP_C3HHeJ_G0021917.1 mouse_genomes_project 15 84802975 84805045 - Phf21b protein_coding processed_transcript MGP_C3HHeJ_T0041766.1 MGP_C3HHeJ_G0021917.1 mouse_genomes_project 15 84802977 84875960 - MGP_C3HHeJ_P0041766 Phf21b protein_coding protein_coding MGP_C3HHeJ_T0041767.1 MGP_C3HHeJ_G0021917.1 mouse_genomes_project 15 84803726 84875662 - MGP_C3HHeJ_P0041767 Phf21b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041768.1 MGP_C3HHeJ_G0021917.1 mouse_genomes_project 15 84804966 84809044 - Phf21b protein_coding retained_intron MGP_C3HHeJ_T0041769.1 MGP_C3HHeJ_G0021917.1 mouse_genomes_project 15 84812010 84820907 - Phf21b protein_coding retained_intron MGP_C3HHeJ_T0099001.1 MGP_C3HHeJ_G0037195.1 mouse_genomes_project 15 76602980 76603126 - Gm24056 snRNA snRNA MGP_C3HHeJ_T0040376.1 MGP_C3HHeJ_G0021488.1 mouse_genomes_project 15 18572764 19079170 + MGP_C3HHeJ_P0040376 Cdh12 protein_coding protein_coding MGP_C3HHeJ_T0040940.1 MGP_C3HHeJ_G0021685.1 mouse_genomes_project 15 74393817 74398611 + MGP_C3HHeJ_P0040940 Ly6g protein_coding protein_coding MGP_C3HHeJ_T0042414.1 MGP_C3HHeJ_G0022133.1 mouse_genomes_project 15 103311005 103315781 + MGP_C3HHeJ_P0042414 Igfbp6 protein_coding protein_coding MGP_C3HHeJ_T0041252.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77353781 77439098 - MGP_C3HHeJ_P0041252 Myh9 protein_coding protein_coding MGP_C3HHeJ_T0041253.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77358522 77360385 - Myh9 protein_coding retained_intron MGP_C3HHeJ_T0041254.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77381375 77438979 - Myh9 protein_coding retained_intron MGP_C3HHeJ_T0041255.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77383406 77439028 - Myh9 protein_coding retained_intron MGP_C3HHeJ_T0041256.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77383922 77438970 - MGP_C3HHeJ_P0041256 Myh9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041257.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77387833 77407446 - Myh9 protein_coding processed_transcript MGP_C3HHeJ_T0041258.1 MGP_C3HHeJ_G0021770.1 mouse_genomes_project 15 77399760 77439028 - Myh9 protein_coding retained_intron MGP_C3HHeJ_T0009977.1 MGP_C3HHeJ_G0008110.1 mouse_genomes_project 15 79679052 79679143 - Mir7213 miRNA miRNA MGP_C3HHeJ_T0098977.1 MGP_C3HHeJ_G0037171.1 mouse_genomes_project 15 34140987 34141146 + Gm22979 snRNA snRNA MGP_C3HHeJ_T0003527.1 MGP_C3HHeJ_G0003199.1 mouse_genomes_project 15 35404678 35405972 + Gm28221 antisense antisense MGP_C3HHeJ_T0100254.1 MGP_C3HHeJ_G0038448.1 mouse_genomes_project 15 42473145 42473277 + Gm25093 snoRNA snoRNA MGP_C3HHeJ_T0041113.1 MGP_C3HHeJ_G0021727.1 mouse_genomes_project 15 75688003 75696288 + MGP_C3HHeJ_P0041113 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0012956.1 MGP_C3HHeJ_G0011060.1 mouse_genomes_project 15 79356044 79366885 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009941.1 MGP_C3HHeJ_G0008074.1 mouse_genomes_project 15 2796563 2796677 + Gm27760 miRNA miRNA MGP_C3HHeJ_T0040443.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938085 31962487 + Mtdh protein_coding retained_intron MGP_C3HHeJ_T0040444.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938110 32008468 + MGP_C3HHeJ_P0040444 Mtdh protein_coding protein_coding MGP_C3HHeJ_T0040445.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938116 31987026 + Mtdh protein_coding retained_intron MGP_C3HHeJ_T0040446.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938427 32000426 + MGP_C3HHeJ_P0040446 Mtdh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040447.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938699 32002862 + MGP_C3HHeJ_P0040447 Mtdh protein_coding protein_coding MGP_C3HHeJ_T0040448.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938710 32002893 + MGP_C3HHeJ_P0040448 Mtdh protein_coding protein_coding MGP_C3HHeJ_T0040449.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31938713 31986424 + MGP_C3HHeJ_P0040449 Mtdh protein_coding protein_coding MGP_C3HHeJ_T0040450.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31939244 31978896 + Mtdh protein_coding processed_transcript MGP_C3HHeJ_T0040451.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31975840 32006792 + MGP_C3HHeJ_P0040451 Mtdh protein_coding protein_coding MGP_C3HHeJ_T0040452.1 MGP_C3HHeJ_G0021517.1 mouse_genomes_project 15 31996167 32007365 + Mtdh protein_coding processed_transcript MGP_C3HHeJ_T0041479.1 MGP_C3HHeJ_G0021831.1 mouse_genomes_project 15 79779768 79803145 + MGP_C3HHeJ_P0041479 Syngr1 protein_coding protein_coding MGP_C3HHeJ_T0041480.1 MGP_C3HHeJ_G0021831.1 mouse_genomes_project 15 79779778 79809205 + MGP_C3HHeJ_P0041480 Syngr1 protein_coding protein_coding MGP_C3HHeJ_T0041481.1 MGP_C3HHeJ_G0021831.1 mouse_genomes_project 15 79786611 79801366 + MGP_C3HHeJ_P0041481 Syngr1 protein_coding protein_coding MGP_C3HHeJ_T0041482.1 MGP_C3HHeJ_G0021831.1 mouse_genomes_project 15 79805176 79805969 + MGP_C3HHeJ_P0041482 Syngr1 protein_coding protein_coding MGP_C3HHeJ_T0011289.1 MGP_C3HHeJ_G0009422.1 mouse_genomes_project 15 15322092 15322400 + Gm22895 misc_RNA misc_RNA MGP_C3HHeJ_T0009981.1 MGP_C3HHeJ_G0008114.1 mouse_genomes_project 15 81348004 81348058 + Gm23880 miRNA miRNA MGP_C3HHeJ_T0101751.1 MGP_C3HHeJ_G0039716.1 mouse_genomes_project 15 74066722 74067572 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0041243.1 MGP_C3HHeJ_G0021762.1 mouse_genomes_project 15 76818255 76820173 - MGP_C3HHeJ_P0041243 Apol9a protein_coding protein_coding MGP_C3HHeJ_T0098982.1 MGP_C3HHeJ_G0037176.1 mouse_genomes_project 15 45137853 45137915 - Gm23665 snRNA snRNA MGP_C3HHeJ_T0041426.1 MGP_C3HHeJ_G0021821.1 mouse_genomes_project 15 79370850 79395233 + MGP_C3HHeJ_P0041426 Gtpbp1 protein_coding protein_coding MGP_C3HHeJ_T0040564.1 MGP_C3HHeJ_G0021556.1 mouse_genomes_project 15 37170708 37666652 + MGP_C3HHeJ_P0040564 Rims2 protein_coding protein_coding MGP_C3HHeJ_T0040565.1 MGP_C3HHeJ_G0021556.1 mouse_genomes_project 15 37170739 37666476 + MGP_C3HHeJ_P0040565 Rims2 protein_coding protein_coding MGP_C3HHeJ_T0040566.1 MGP_C3HHeJ_G0021556.1 mouse_genomes_project 15 37247111 37318217 + MGP_C3HHeJ_P0040566 Rims2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040567.1 MGP_C3HHeJ_G0021556.1 mouse_genomes_project 15 37360264 37600385 + MGP_C3HHeJ_P0040567 Rims2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040568.1 MGP_C3HHeJ_G0021556.1 mouse_genomes_project 15 37643947 37669087 + MGP_C3HHeJ_P0040568 Rims2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0012918.1 MGP_C3HHeJ_G0011022.1 mouse_genomes_project 15 5976143 5976963 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042554.1 MGP_C3HHeJ_G0022172.1 mouse_genomes_project 15 104570233 104597910 - MGP_C3HHeJ_P0042554 Zfp385a protein_coding protein_coding MGP_C3HHeJ_T0042085.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98493342 98533791 - MGP_C3HHeJ_P0042085 Hdac7 protein_coding protein_coding MGP_C3HHeJ_T0042086.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98493359 98534064 - MGP_C3HHeJ_P0042086 Hdac7 protein_coding protein_coding MGP_C3HHeJ_T0042087.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98493365 98495127 - Hdac7 protein_coding retained_intron MGP_C3HHeJ_T0042088.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98493390 98533791 - MGP_C3HHeJ_P0042088 Hdac7 protein_coding protein_coding MGP_C3HHeJ_T0042089.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98494378 98533674 - MGP_C3HHeJ_P0042089 Hdac7 protein_coding protein_coding MGP_C3HHeJ_T0042090.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98498480 98533766 - MGP_C3HHeJ_P0042090 Hdac7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042091.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98500292 98508979 - MGP_C3HHeJ_P0042091 Hdac7 protein_coding protein_coding MGP_C3HHeJ_T0042092.1 MGP_C3HHeJ_G0022015.1 mouse_genomes_project 15 98501953 98509330 - MGP_C3HHeJ_P0042092 Hdac7 protein_coding protein_coding MGP_C3HHeJ_T0100239.1 MGP_C3HHeJ_G0038433.1 mouse_genomes_project 15 24755755 24755886 - Gm23903 snoRNA snoRNA MGP_C3HHeJ_T0040851.1 MGP_C3HHeJ_G0021658.1 mouse_genomes_project 15 72149783 72244884 - MGP_C3HHeJ_P0040851 Ago2 protein_coding protein_coding MGP_C3HHeJ_T0040672.1 MGP_C3HHeJ_G0021599.1 mouse_genomes_project 15 54146303 54421323 - MGP_C3HHeJ_P0040672 Sntb1 protein_coding protein_coding MGP_C3HHeJ_T0040673.1 MGP_C3HHeJ_G0021599.1 mouse_genomes_project 15 54300624 54421096 - MGP_C3HHeJ_P0040673 Sntb1 protein_coding protein_coding MGP_C3HHeJ_T0040674.1 MGP_C3HHeJ_G0021599.1 mouse_genomes_project 15 54301598 54420684 - Sntb1 protein_coding processed_transcript MGP_C3HHeJ_T0098369.1 MGP_C3HHeJ_G0036577.1 mouse_genomes_project 15 35269621 35270381 + Gm16137 sense_intronic sense_intronic MGP_C3HHeJ_T0041709.1 MGP_C3HHeJ_G0021900.1 mouse_genomes_project 15 83471327 83489091 + MGP_C3HHeJ_P0041709 Bik protein_coding protein_coding MGP_C3HHeJ_T0006735.1 MGP_C3HHeJ_G0005547.1 mouse_genomes_project 15 104362039 104386000 - D930007P13Rik lincRNA lincRNA MGP_C3HHeJ_T0041089.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678354 75682424 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041090.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678354 75682425 - MGP_C3HHeJ_P0041090 Sharpin protein_coding protein_coding MGP_C3HHeJ_T0041091.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678355 75682361 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041092.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678355 75682389 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041093.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678368 75679153 - MGP_C3HHeJ_P0041093 Sharpin protein_coding protein_coding MGP_C3HHeJ_T0041094.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678432 75679509 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041095.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75678942 75682064 - MGP_C3HHeJ_P0041095 Sharpin protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041096.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75679162 75682005 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041097.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75679210 75681996 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041098.1 MGP_C3HHeJ_G0021725.1 mouse_genomes_project 15 75679925 75682026 - Sharpin protein_coding retained_intron MGP_C3HHeJ_T0041836.1 MGP_C3HHeJ_G0021944.1 mouse_genomes_project 15 89086759 89093809 + MGP_C3HHeJ_P0041836 Creld2 protein_coding protein_coding MGP_C3HHeJ_T0041536.1 MGP_C3HHeJ_G0021846.1 mouse_genomes_project 15 80967934 80972390 + MGP_C3HHeJ_P0041536 Mchr1 protein_coding protein_coding MGP_C3HHeJ_T0041192.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053560 76056552 + MGP_C3HHeJ_P0041192 Lrrc14 protein_coding protein_coding MGP_C3HHeJ_T0041193.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053575 76060680 + MGP_C3HHeJ_P0041193 Lrrc14 protein_coding protein_coding MGP_C3HHeJ_T0041194.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053576 76058017 + MGP_C3HHeJ_P0041194 Lrrc14 protein_coding protein_coding MGP_C3HHeJ_T0041195.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053580 76058066 + MGP_C3HHeJ_P0041195 Lrrc14 protein_coding protein_coding MGP_C3HHeJ_T0041196.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053580 76058034 + MGP_C3HHeJ_P0041196 Lrrc14 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041197.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053586 76055905 + MGP_C3HHeJ_P0041197 Lrrc14 protein_coding protein_coding MGP_C3HHeJ_T0041198.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053600 76058112 + Lrrc14 protein_coding retained_intron MGP_C3HHeJ_T0041199.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053610 76059630 + Lrrc14 protein_coding retained_intron MGP_C3HHeJ_T0041200.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053610 76057731 + Lrrc14 protein_coding processed_transcript MGP_C3HHeJ_T0041201.1 MGP_C3HHeJ_G0021749.1 mouse_genomes_project 15 76053668 76058073 + MGP_C3HHeJ_P0041201 Lrrc14 protein_coding protein_coding MGP_C3HHeJ_T0011285.1 MGP_C3HHeJ_G0009418.1 mouse_genomes_project 15 663573 663843 + Gm23228 misc_RNA misc_RNA MGP_C3HHeJ_T0101139.1 MGP_C3HHeJ_G0039303.1 mouse_genomes_project 15 31286675 31288622 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101140.1 MGP_C3HHeJ_G0039303.1 mouse_genomes_project 15 31287850 31288585 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0042168.1 MGP_C3HHeJ_G0022040.1 mouse_genomes_project 15 99510664 99529948 + MGP_C3HHeJ_P0042168 Ccdc65 protein_coding protein_coding MGP_C3HHeJ_T0041245.1 MGP_C3HHeJ_G0021764.1 mouse_genomes_project 15 76972864 76973790 - MGP_C3HHeJ_P0041245 1700025B11Rik protein_coding protein_coding MGP_C3HHeJ_T0042533.1 MGP_C3HHeJ_G0022165.1 mouse_genomes_project 15 104246229 104265988 + MGP_C3HHeJ_P0042533 Hoxc4 protein_coding protein_coding MGP_C3HHeJ_T0042534.1 MGP_C3HHeJ_G0022165.1 mouse_genomes_project 15 104263977 104266435 + MGP_C3HHeJ_P0042534 Hoxc4 protein_coding protein_coding MGP_C3HHeJ_T0009974.1 MGP_C3HHeJ_G0008107.1 mouse_genomes_project 15 79034124 79034197 - Mir1943 miRNA miRNA MGP_C3HHeJ_T0100265.1 MGP_C3HHeJ_G0038459.1 mouse_genomes_project 15 68627756 68627885 - Gm23987 snoRNA snoRNA MGP_C3HHeJ_T0012970.1 MGP_C3HHeJ_G0011074.1 mouse_genomes_project 15 100705515 100705809 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012939.1 MGP_C3HHeJ_G0011043.1 mouse_genomes_project 15 52503737 52505214 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011294.1 MGP_C3HHeJ_G0009427.1 mouse_genomes_project 15 60796132 60796331 + Gm27782 misc_RNA misc_RNA MGP_C3HHeJ_T0040910.1 MGP_C3HHeJ_G0021676.1 mouse_genomes_project 15 73880908 73882473 - MGP_C3HHeJ_P0040910 Ly6d protein_coding protein_coding MGP_C3HHeJ_T0041636.1 MGP_C3HHeJ_G0021872.1 mouse_genomes_project 15 81940104 82001206 + MGP_C3HHeJ_P0041636 Srebf2 protein_coding protein_coding MGP_C3HHeJ_T0100261.1 MGP_C3HHeJ_G0038455.1 mouse_genomes_project 15 59357312 59357444 - Gm23835 snoRNA snoRNA MGP_C3HHeJ_T0042005.1 MGP_C3HHeJ_G0021987.1 mouse_genomes_project 15 92828163 93214694 + MGP_C3HHeJ_P0042005 Pdzrn4 protein_coding protein_coding MGP_C3HHeJ_T0042006.1 MGP_C3HHeJ_G0021987.1 mouse_genomes_project 15 93044242 93214694 + MGP_C3HHeJ_P0042006 Pdzrn4 protein_coding protein_coding MGP_C3HHeJ_T0012966.1 MGP_C3HHeJ_G0011070.1 mouse_genomes_project 15 91927408 91929942 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010014.1 MGP_C3HHeJ_G0008147.1 mouse_genomes_project 15 102844823 102844952 + Gm44323 miRNA miRNA MGP_C3HHeJ_T0099011.1 MGP_C3HHeJ_G0037205.1 mouse_genomes_project 15 90400169 90400276 - Gm24415 snRNA snRNA MGP_C3HHeJ_T0009955.1 MGP_C3HHeJ_G0008088.1 mouse_genomes_project 15 36309335 36309444 + Gm24098 miRNA miRNA MGP_C3HHeJ_T0040303.1 MGP_C3HHeJ_G0021465.1 mouse_genomes_project 15 7528887 7540400 - MGP_C3HHeJ_P0040303 Brix1 protein_coding protein_coding MGP_C3HHeJ_T0040304.1 MGP_C3HHeJ_G0021465.1 mouse_genomes_project 15 7533226 7539839 - MGP_C3HHeJ_P0040304 Brix1 protein_coding protein_coding MGP_C3HHeJ_T0040305.1 MGP_C3HHeJ_G0021465.1 mouse_genomes_project 15 7533597 7540362 - MGP_C3HHeJ_P0040305 Brix1 protein_coding protein_coding MGP_C3HHeJ_T0040306.1 MGP_C3HHeJ_G0021465.1 mouse_genomes_project 15 7534039 7540340 - MGP_C3HHeJ_P0040306 Brix1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010001.1 MGP_C3HHeJ_G0008134.1 mouse_genomes_project 15 89464225 89464298 - Mir6958 miRNA miRNA MGP_C3HHeJ_T0040189.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3248494 3393600 + Dab2 protein_coding processed_transcript MGP_C3HHeJ_T0040190.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3248494 3398792 + MGP_C3HHeJ_P0040190 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040191.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3248519 3375192 + MGP_C3HHeJ_P0040191 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040192.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3248538 3386013 + MGP_C3HHeJ_P0040192 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040193.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3248574 3291904 + Dab2 protein_coding processed_transcript MGP_C3HHeJ_T0040194.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3343854 3398785 + MGP_C3HHeJ_P0040194 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040195.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3344004 3398785 + MGP_C3HHeJ_P0040195 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040196.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3344032 3397708 + MGP_C3HHeJ_P0040196 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040197.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3344033 3397728 + MGP_C3HHeJ_P0040197 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040198.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3344035 3386013 + MGP_C3HHeJ_P0040198 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040199.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3346302 3376570 + MGP_C3HHeJ_P0040199 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040200.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3347361 3378089 + MGP_C3HHeJ_P0040200 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040201.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3380487 3396987 + MGP_C3HHeJ_P0040201 Dab2 protein_coding protein_coding MGP_C3HHeJ_T0040202.1 MGP_C3HHeJ_G0021439.1 mouse_genomes_project 15 3381409 3383272 + Dab2 protein_coding retained_intron MGP_C3HHeJ_T0042322.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101675179 101702170 - MGP_C3HHeJ_P0042322 Bin2 protein_coding protein_coding MGP_C3HHeJ_T0042323.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101675185 101702122 - MGP_C3HHeJ_P0042323 Bin2 protein_coding protein_coding MGP_C3HHeJ_T0042324.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101675185 101702144 - MGP_C3HHeJ_P0042324 Bin2 protein_coding protein_coding MGP_C3HHeJ_T0042325.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101679349 101702122 - MGP_C3HHeJ_P0042325 Bin2 protein_coding protein_coding MGP_C3HHeJ_T0042326.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101679445 101702142 - MGP_C3HHeJ_P0042326 Bin2 protein_coding protein_coding MGP_C3HHeJ_T0042327.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101679487 101684725 - Bin2 protein_coding processed_transcript MGP_C3HHeJ_T0042328.1 MGP_C3HHeJ_G0022094.1 mouse_genomes_project 15 101682199 101683784 - Bin2 protein_coding retained_intron MGP_C3HHeJ_T0040971.1 MGP_C3HHeJ_G0021695.1 mouse_genomes_project 15 74964397 74989007 - MGP_C3HHeJ_P0040971 Top1mt protein_coding protein_coding MGP_C3HHeJ_T0042524.1 MGP_C3HHeJ_G0022161.1 mouse_genomes_project 15 104192034 104242979 + Hoxc5 protein_coding processed_transcript MGP_C3HHeJ_T0042532.1 MGP_C3HHeJ_G0022161.1 mouse_genomes_project 15 104241117 104244732 + MGP_C3HHeJ_P0042532 Hoxc5 protein_coding protein_coding MGP_C3HHeJ_T0040654.1 MGP_C3HHeJ_G0021595.1 mouse_genomes_project 15 53600034 53753117 + MGP_C3HHeJ_P0040654 Deptor protein_coding protein_coding MGP_C3HHeJ_T0040655.1 MGP_C3HHeJ_G0021595.1 mouse_genomes_project 15 53600141 53709964 + MGP_C3HHeJ_P0040655 Deptor protein_coding protein_coding MGP_C3HHeJ_T0040656.1 MGP_C3HHeJ_G0021595.1 mouse_genomes_project 15 53622745 53748055 + MGP_C3HHeJ_P0040656 Deptor protein_coding protein_coding MGP_C3HHeJ_T0042402.1 MGP_C3HHeJ_G0022125.1 mouse_genomes_project 15 103060124 103066324 - MGP_C3HHeJ_P0042402 Krt4 protein_coding protein_coding MGP_C3HHeJ_T0041518.1 MGP_C3HHeJ_G0021844.1 mouse_genomes_project 15 80729747 80740231 + MGP_C3HHeJ_P0041518 Sgsm3 protein_coding protein_coding MGP_C3HHeJ_T0098372.1 MGP_C3HHeJ_G0036580.1 mouse_genomes_project 15 95652046 95722787 - 1700129L04Rik sense_intronic sense_intronic MGP_C3HHeJ_T0098373.1 MGP_C3HHeJ_G0036580.1 mouse_genomes_project 15 95652120 95709784 - 1700129L04Rik sense_intronic sense_intronic MGP_C3HHeJ_T0010000.1 MGP_C3HHeJ_G0008133.1 mouse_genomes_project 15 89441560 89441621 - Mir7118 miRNA miRNA MGP_C3HHeJ_T0009969.1 MGP_C3HHeJ_G0008102.1 mouse_genomes_project 15 75620067 75620157 - Mir3079 miRNA miRNA MGP_C3HHeJ_T0041282.1 MGP_C3HHeJ_G0021778.1 mouse_genomes_project 15 77983184 77993365 - MGP_C3HHeJ_P0041282 Tex33 protein_coding protein_coding MGP_C3HHeJ_T0041283.1 MGP_C3HHeJ_G0021778.1 mouse_genomes_project 15 77983184 78000486 - MGP_C3HHeJ_P0041283 Tex33 protein_coding protein_coding MGP_C3HHeJ_T0041284.1 MGP_C3HHeJ_G0021778.1 mouse_genomes_project 15 77983184 78000486 - MGP_C3HHeJ_P0041284 Tex33 protein_coding protein_coding MGP_C3HHeJ_T0012969.1 MGP_C3HHeJ_G0011073.1 mouse_genomes_project 15 100428421 100428778 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041465.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79589365 79605919 - MGP_C3HHeJ_P0041465 Cbx7 protein_coding protein_coding MGP_C3HHeJ_T0041466.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79589379 79606042 - MGP_C3HHeJ_P0041466 Cbx7 protein_coding protein_coding MGP_C3HHeJ_T0041467.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79589382 79606171 - Cbx7 protein_coding retained_intron MGP_C3HHeJ_T0041468.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79591762 79607287 - MGP_C3HHeJ_P0041468 Cbx7 protein_coding protein_coding MGP_C3HHeJ_T0041469.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79592032 79649325 - MGP_C3HHeJ_P0041469 Cbx7 protein_coding protein_coding MGP_C3HHeJ_T0041470.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79592535 79605919 - MGP_C3HHeJ_P0041470 Cbx7 protein_coding protein_coding MGP_C3HHeJ_T0041471.1 MGP_C3HHeJ_G0021828.1 mouse_genomes_project 15 79604002 79607218 - Cbx7 protein_coding retained_intron MGP_C3HHeJ_T0040731.1 MGP_C3HHeJ_G0021626.1 mouse_genomes_project 15 58282587 58291699 + MGP_C3HHeJ_P0040731 Trib1 protein_coding protein_coding MGP_C3HHeJ_T0040732.1 MGP_C3HHeJ_G0021626.1 mouse_genomes_project 15 58282890 58288833 + MGP_C3HHeJ_P0040732 Trib1 protein_coding protein_coding MGP_C3HHeJ_T0040712.1 MGP_C3HHeJ_G0021614.1 mouse_genomes_project 15 56996591 57039647 + MGP_C3HHeJ_P0040712 Fam91a1 protein_coding protein_coding MGP_C3HHeJ_T0041164.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75961440 75965354 - MGP_C3HHeJ_P0041164 Tonsl protein_coding protein_coding MGP_C3HHeJ_T0041165.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75965328 75968595 - MGP_C3HHeJ_P0041165 Tonsl protein_coding protein_coding MGP_C3HHeJ_T0041166.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75965563 75979240 - MGP_C3HHeJ_P0041166 Tonsl protein_coding protein_coding MGP_C3HHeJ_T0041167.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75965564 75968676 - Tonsl protein_coding retained_intron MGP_C3HHeJ_T0041168.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75972063 75972967 - MGP_C3HHeJ_P0041168 Tonsl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041169.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75972096 75979211 - MGP_C3HHeJ_P0041169 Tonsl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041170.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75976468 75977561 - Tonsl protein_coding retained_intron MGP_C3HHeJ_T0041171.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75977838 75978920 - Tonsl protein_coding retained_intron MGP_C3HHeJ_T0041172.1 MGP_C3HHeJ_G0021741.1 mouse_genomes_project 15 75978140 75979122 - MGP_C3HHeJ_P0041172 Tonsl protein_coding protein_coding MGP_C3HHeJ_T0040754.1 MGP_C3HHeJ_G0021635.1 mouse_genomes_project 15 62769575 62915063 - MGP_C3HHeJ_P0040754 Fam49b protein_coding protein_coding MGP_C3HHeJ_T0040755.1 MGP_C3HHeJ_G0021635.1 mouse_genomes_project 15 62771422 62843449 - MGP_C3HHeJ_P0040755 Fam49b protein_coding protein_coding MGP_C3HHeJ_T0000909.1 MGP_C3HHeJ_G0000849.1 mouse_genomes_project 15 62273041 62285348 + TEC TEC MGP_C3HHeJ_T0100259.1 MGP_C3HHeJ_G0038453.1 mouse_genomes_project 15 56603034 56603170 - Gm22299 snoRNA snoRNA MGP_C3HHeJ_T0042377.1 MGP_C3HHeJ_G0022107.1 mouse_genomes_project 15 102489853 102490794 + Krt7 protein_coding processed_transcript MGP_C3HHeJ_T0042378.1 MGP_C3HHeJ_G0022107.1 mouse_genomes_project 15 102489862 102491206 + Krt7 protein_coding processed_transcript MGP_C3HHeJ_T0042379.1 MGP_C3HHeJ_G0022107.1 mouse_genomes_project 15 102489862 102507273 + Krt7 protein_coding processed_transcript MGP_C3HHeJ_T0042380.1 MGP_C3HHeJ_G0022107.1 mouse_genomes_project 15 102489913 102498308 + MGP_C3HHeJ_P0042380 Krt7 protein_coding protein_coding MGP_C3HHeJ_T0042381.1 MGP_C3HHeJ_G0022107.1 mouse_genomes_project 15 102491212 102509987 + MGP_C3HHeJ_P0042381 Krt7 protein_coding protein_coding MGP_C3HHeJ_T0042382.1 MGP_C3HHeJ_G0022107.1 mouse_genomes_project 15 102491259 102507451 + Krt7 protein_coding retained_intron MGP_C3HHeJ_T0003530.1 MGP_C3HHeJ_G0003202.1 mouse_genomes_project 15 56249046 56249860 - Gm16006 antisense antisense MGP_C3HHeJ_T0042066.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440111 98467654 - MGP_C3HHeJ_P0042066 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0042067.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440294 98467606 - MGP_C3HHeJ_P0042067 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0042068.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440297 98467472 - MGP_C3HHeJ_P0042068 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0042069.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440357 98466870 - MGP_C3HHeJ_P0042069 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0042070.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440505 98467474 - MGP_C3HHeJ_P0042070 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0042071.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440622 98467228 - MGP_C3HHeJ_P0042071 Rapgef3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042072.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98440705 98444203 - Rapgef3 protein_coding retained_intron MGP_C3HHeJ_T0042073.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98441861 98467395 - Rapgef3 protein_coding retained_intron MGP_C3HHeJ_T0042074.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98445037 98446035 - Rapgef3 protein_coding retained_intron MGP_C3HHeJ_T0042075.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98445687 98452827 - Rapgef3 protein_coding retained_intron MGP_C3HHeJ_T0042077.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98454221 98455750 - Rapgef3 protein_coding processed_transcript MGP_C3HHeJ_T0042078.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98454683 98466854 - MGP_C3HHeJ_P0042078 Rapgef3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042079.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98454688 98457203 - Rapgef3 protein_coding processed_transcript MGP_C3HHeJ_T0042080.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98455998 98467072 - MGP_C3HHeJ_P0042080 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0042081.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98456021 98457178 - Rapgef3 protein_coding retained_intron MGP_C3HHeJ_T0042082.1 MGP_C3HHeJ_G0022013.1 mouse_genomes_project 15 98466666 98467780 - MGP_C3HHeJ_P0042082 Rapgef3 protein_coding protein_coding MGP_C3HHeJ_T0017261.1 MGP_C3HHeJ_G0015072.1 mouse_genomes_project 15 100112812 100125012 + 1700120C14Rik processed_transcript antisense MGP_C3HHeJ_T0017262.1 MGP_C3HHeJ_G0015072.1 mouse_genomes_project 15 100112860 100123842 + 1700120C14Rik processed_transcript antisense MGP_C3HHeJ_T0017263.1 MGP_C3HHeJ_G0015072.1 mouse_genomes_project 15 100112862 100115326 + 1700120C14Rik processed_transcript retained_intron MGP_C3HHeJ_T0000911.1 MGP_C3HHeJ_G0000851.1 mouse_genomes_project 15 67248938 67251856 - TEC TEC MGP_C3HHeJ_T0041660.1 MGP_C3HHeJ_G0021886.1 mouse_genomes_project 15 82503676 82513388 - MGP_C3HHeJ_P0041660 protein_coding protein_coding MGP_C3HHeJ_T0003553.1 MGP_C3HHeJ_G0003220.1 mouse_genomes_project 15 89791381 89801320 + C230037L18Rik antisense antisense MGP_C3HHeJ_T0003554.1 MGP_C3HHeJ_G0003220.1 mouse_genomes_project 15 89791397 89794386 + C230037L18Rik antisense antisense MGP_C3HHeJ_T0003555.1 MGP_C3HHeJ_G0003220.1 mouse_genomes_project 15 89794211 89801255 + C230037L18Rik antisense antisense MGP_C3HHeJ_T0040366.1 MGP_C3HHeJ_G0021484.1 mouse_genomes_project 15 10199409 10350120 - MGP_C3HHeJ_P0040366 Cdh6 protein_coding protein_coding MGP_C3HHeJ_T0009976.1 MGP_C3HHeJ_G0008109.1 mouse_genomes_project 15 79267137 79267319 - Gm27903 miRNA miRNA MGP_C3HHeJ_T0040598.1 MGP_C3HHeJ_G0021573.1 mouse_genomes_project 15 42746843 42767520 + MGP_C3HHeJ_P0040598 Ebag9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042436.1 MGP_C3HHeJ_G0022140.1 mouse_genomes_project 15 103470764 103500005 + MGP_C3HHeJ_P0042436 Espl1 protein_coding protein_coding MGP_C3HHeJ_T0041663.1 MGP_C3HHeJ_G0021889.1 mouse_genomes_project 15 82690726 82694829 - MGP_C3HHeJ_P0041663 Cyp2d26 protein_coding protein_coding MGP_C3HHeJ_T0041771.1 MGP_C3HHeJ_G0021919.1 mouse_genomes_project 15 84945728 84965312 + MGP_C3HHeJ_P0041771 Nup50 protein_coding protein_coding MGP_C3HHeJ_T0041630.1 MGP_C3HHeJ_G0021870.1 mouse_genomes_project 15 81858060 81919076 + MGP_C3HHeJ_P0041630 Mei1 protein_coding protein_coding MGP_C3HHeJ_T0041631.1 MGP_C3HHeJ_G0021870.1 mouse_genomes_project 15 81858217 81919240 + MGP_C3HHeJ_P0041631 Mei1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041632.1 MGP_C3HHeJ_G0021870.1 mouse_genomes_project 15 81871532 81919226 + MGP_C3HHeJ_P0041632 Mei1 protein_coding protein_coding MGP_C3HHeJ_T0041633.1 MGP_C3HHeJ_G0021870.1 mouse_genomes_project 15 81871544 81919228 + MGP_C3HHeJ_P0041633 Mei1 protein_coding protein_coding MGP_C3HHeJ_T0041634.1 MGP_C3HHeJ_G0021870.1 mouse_genomes_project 15 81872245 81919153 + MGP_C3HHeJ_P0041634 Mei1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099014.1 MGP_C3HHeJ_G0037208.1 mouse_genomes_project 15 97302350 97302458 + Gm22045 snRNA snRNA MGP_C3HHeJ_T0042011.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93865396 93877587 - MGP_C3HHeJ_P0042011 Zcrb1 protein_coding protein_coding MGP_C3HHeJ_T0042012.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93865405 93877620 - MGP_C3HHeJ_P0042012 Zcrb1 protein_coding protein_coding MGP_C3HHeJ_T0042013.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93865409 93870481 - Zcrb1 protein_coding retained_intron MGP_C3HHeJ_T0042014.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93865412 93870678 - Zcrb1 protein_coding retained_intron MGP_C3HHeJ_T0042015.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93866916 93867444 - Zcrb1 protein_coding retained_intron MGP_C3HHeJ_T0042016.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93867048 93870968 - Zcrb1 protein_coding retained_intron MGP_C3HHeJ_T0042017.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93867100 93877620 - MGP_C3HHeJ_P0042017 Zcrb1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042018.1 MGP_C3HHeJ_G0021990.1 mouse_genomes_project 15 93873366 93877559 - Zcrb1 protein_coding retained_intron MGP_C3HHeJ_T0041163.1 MGP_C3HHeJ_G0021740.1 mouse_genomes_project 15 75950086 75954546 - MGP_C3HHeJ_P0041163 Slc39a4 protein_coding protein_coding MGP_C3HHeJ_T0041592.1 MGP_C3HHeJ_G0021860.1 mouse_genomes_project 15 81624936 81635059 - MGP_C3HHeJ_P0041592 Tob2 protein_coding protein_coding MGP_C3HHeJ_T0100245.1 MGP_C3HHeJ_G0038439.1 mouse_genomes_project 15 30083385 30083456 - Snord123 snoRNA snoRNA MGP_C3HHeJ_T0009964.1 MGP_C3HHeJ_G0008097.1 mouse_genomes_project 15 70797715 70797820 + miRNA miRNA MGP_C3HHeJ_T0041133.1 MGP_C3HHeJ_G0021731.1 mouse_genomes_project 15 75789455 75814908 - MGP_C3HHeJ_P0041133 Bop1 protein_coding protein_coding MGP_C3HHeJ_T0006657.1 MGP_C3HHeJ_G0005495.1 mouse_genomes_project 15 7778444 7844797 + 4930556M19Rik lincRNA lincRNA MGP_C3HHeJ_T0040233.1 MGP_C3HHeJ_G0021448.1 mouse_genomes_project 15 5105646 5156997 + MGP_C3HHeJ_P0040233 Nup155 protein_coding protein_coding MGP_C3HHeJ_T0010005.1 MGP_C3HHeJ_G0008138.1 mouse_genomes_project 15 99297468 99297585 - Mir1291 miRNA miRNA MGP_C3HHeJ_T0042270.1 MGP_C3HHeJ_G0022076.1 mouse_genomes_project 15 100671640 100747902 - MGP_C3HHeJ_P0042270 Lima1 protein_coding protein_coding MGP_C3HHeJ_T0042271.1 MGP_C3HHeJ_G0022076.1 mouse_genomes_project 15 100674417 100677168 - Lima1 protein_coding retained_intron MGP_C3HHeJ_T0042272.1 MGP_C3HHeJ_G0022076.1 mouse_genomes_project 15 100737481 100773924 - Lima1 protein_coding retained_intron MGP_C3HHeJ_T0041802.1 MGP_C3HHeJ_G0021933.1 mouse_genomes_project 15 85942157 85959314 + MGP_C3HHeJ_P0041802 Gtse1 protein_coding protein_coding MGP_C3HHeJ_T0042374.1 MGP_C3HHeJ_G0022104.1 mouse_genomes_project 15 102340227 102348151 + MGP_C3HHeJ_P0042374 Nr4a1 protein_coding protein_coding MGP_C3HHeJ_T0040795.1 MGP_C3HHeJ_G0021642.1 mouse_genomes_project 15 64864950 65162469 - MGP_C3HHeJ_P0040795 Kcnq3 protein_coding protein_coding MGP_C3HHeJ_T0040796.1 MGP_C3HHeJ_G0021642.1 mouse_genomes_project 15 64904839 64974679 - Kcnq3 protein_coding processed_transcript MGP_C3HHeJ_T0040797.1 MGP_C3HHeJ_G0021642.1 mouse_genomes_project 15 65159321 65162305 - Kcnq3 protein_coding retained_intron MGP_C3HHeJ_T0099003.1 MGP_C3HHeJ_G0037197.1 mouse_genomes_project 15 79776598 79776705 - Gm24204 snRNA snRNA MGP_C3HHeJ_T0041512.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80704443 80740784 + MGP_C3HHeJ_P0041512 Sgsm3 protein_coding protein_coding MGP_C3HHeJ_T0041513.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80704457 80735010 + MGP_C3HHeJ_P0041513 Sgsm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041514.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80704477 80740784 + Sgsm3 protein_coding processed_transcript MGP_C3HHeJ_T0041515.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80704498 80731305 + Sgsm3 protein_coding processed_transcript MGP_C3HHeJ_T0041516.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80704498 80734992 + MGP_C3HHeJ_P0041516 Sgsm3 protein_coding protein_coding MGP_C3HHeJ_T0041517.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80704515 80731305 + Sgsm3 protein_coding processed_transcript MGP_C3HHeJ_T0041519.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80736432 80738445 + Sgsm3 protein_coding retained_intron MGP_C3HHeJ_T0041520.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80736853 80739031 + MGP_C3HHeJ_P0041520 Sgsm3 protein_coding protein_coding MGP_C3HHeJ_T0041521.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80737744 80738794 + Sgsm3 protein_coding retained_intron MGP_C3HHeJ_T0041522.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80738352 80740384 + Sgsm3 protein_coding retained_intron MGP_C3HHeJ_T0041523.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80739129 80740251 + Sgsm3 protein_coding retained_intron MGP_C3HHeJ_T0041524.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80739219 80740236 + Sgsm3 protein_coding retained_intron MGP_C3HHeJ_T0041525.1 MGP_C3HHeJ_G0021843.1 mouse_genomes_project 15 80739371 80740130 + Sgsm3 protein_coding retained_intron MGP_C3HHeJ_T0042023.1 MGP_C3HHeJ_G0021992.1 mouse_genomes_project 15 93989450 94095904 - MGP_C3HHeJ_P0042023 Prickle1 protein_coding protein_coding MGP_C3HHeJ_T0042024.1 MGP_C3HHeJ_G0021992.1 mouse_genomes_project 15 93989450 94013389 - MGP_C3HHeJ_P0042024 Prickle1 protein_coding protein_coding MGP_C3HHeJ_T0040298.1 MGP_C3HHeJ_G0021464.1 mouse_genomes_project 15 7500555 7524985 - MGP_C3HHeJ_P0040298 Dnajc21 protein_coding protein_coding MGP_C3HHeJ_T0040299.1 MGP_C3HHeJ_G0021464.1 mouse_genomes_project 15 7500564 7516138 - MGP_C3HHeJ_P0040299 Dnajc21 protein_coding protein_coding MGP_C3HHeJ_T0040300.1 MGP_C3HHeJ_G0021464.1 mouse_genomes_project 15 7500565 7503792 - Dnajc21 protein_coding retained_intron MGP_C3HHeJ_T0040301.1 MGP_C3HHeJ_G0021464.1 mouse_genomes_project 15 7501495 7505710 - Dnajc21 protein_coding retained_intron MGP_C3HHeJ_T0040302.1 MGP_C3HHeJ_G0021464.1 mouse_genomes_project 15 7506380 7516659 - Dnajc21 protein_coding retained_intron MGP_C3HHeJ_T0040494.1 MGP_C3HHeJ_G0021533.1 mouse_genomes_project 15 34145243 34148215 + MGP_C3HHeJ_P0040494 Polr2k protein_coding protein_coding MGP_C3HHeJ_T0040495.1 MGP_C3HHeJ_G0021533.1 mouse_genomes_project 15 34145266 34148218 + MGP_C3HHeJ_P0040495 Polr2k protein_coding protein_coding MGP_C3HHeJ_T0042275.1 MGP_C3HHeJ_G0022078.1 mouse_genomes_project 15 100880962 100931092 + MGP_C3HHeJ_P0042275 Larp4 protein_coding protein_coding MGP_C3HHeJ_T0042276.1 MGP_C3HHeJ_G0022078.1 mouse_genomes_project 15 100883679 100931092 + MGP_C3HHeJ_P0042276 Larp4 protein_coding protein_coding MGP_C3HHeJ_T0040148.1 MGP_C3HHeJ_G0021424.1 mouse_genomes_project 15 126211 148837 - MGP_C3HHeJ_P0040148 Ccdc152 protein_coding protein_coding MGP_C3HHeJ_T0012934.1 MGP_C3HHeJ_G0011038.1 mouse_genomes_project 15 39186848 39187022 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012914.1 MGP_C3HHeJ_G0011018.1 mouse_genomes_project 15 604635 605619 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100270.1 MGP_C3HHeJ_G0038464.1 mouse_genomes_project 15 80165809 80165946 - Gm23220 snoRNA snoRNA MGP_C3HHeJ_T0040639.1 MGP_C3HHeJ_G0021588.1 mouse_genomes_project 15 52875988 52927352 + MGP_C3HHeJ_P0040639 Colec10 protein_coding protein_coding MGP_C3HHeJ_T0042029.1 MGP_C3HHeJ_G0021994.1 mouse_genomes_project 15 95055850 95079962 - MGP_C3HHeJ_P0042029 Pus7l protein_coding protein_coding MGP_C3HHeJ_T0042030.1 MGP_C3HHeJ_G0021994.1 mouse_genomes_project 15 95069685 95079908 - Pus7l protein_coding retained_intron MGP_C3HHeJ_T0042031.1 MGP_C3HHeJ_G0021994.1 mouse_genomes_project 15 95075924 95079901 - MGP_C3HHeJ_P0042031 Pus7l protein_coding protein_coding MGP_C3HHeJ_T0041147.1 MGP_C3HHeJ_G0021736.1 mouse_genomes_project 15 75873759 75876776 - MGP_C3HHeJ_P0041147 Fbxl6 protein_coding protein_coding MGP_C3HHeJ_T0040519.1 MGP_C3HHeJ_G0021542.1 mouse_genomes_project 15 35259243 35401043 + MGP_C3HHeJ_P0040519 Grhl2 protein_coding protein_coding MGP_C3HHeJ_T0040520.1 MGP_C3HHeJ_G0021542.1 mouse_genomes_project 15 35259243 35369145 + MGP_C3HHeJ_P0040520 Grhl2 protein_coding protein_coding MGP_C3HHeJ_T0040521.1 MGP_C3HHeJ_G0021542.1 mouse_genomes_project 15 35259265 35310761 + MGP_C3HHeJ_P0040521 Grhl2 protein_coding protein_coding MGP_C3HHeJ_T0040522.1 MGP_C3HHeJ_G0021542.1 mouse_genomes_project 15 35350397 35401036 + Grhl2 protein_coding processed_transcript MGP_C3HHeJ_T0040523.1 MGP_C3HHeJ_G0021542.1 mouse_genomes_project 15 35372394 35398414 + MGP_C3HHeJ_P0040523 Grhl2 protein_coding protein_coding MGP_C3HHeJ_T0006698.1 MGP_C3HHeJ_G0005520.1 mouse_genomes_project 15 77550802 77556255 + Gm17638 lincRNA lincRNA MGP_C3HHeJ_T0003542.1 MGP_C3HHeJ_G0003213.1 mouse_genomes_project 15 78806796 78857049 + Gm10863 antisense antisense MGP_C3HHeJ_T0003543.1 MGP_C3HHeJ_G0003213.1 mouse_genomes_project 15 78806813 78856834 + Gm10863 antisense antisense MGP_C3HHeJ_T0003544.1 MGP_C3HHeJ_G0003213.1 mouse_genomes_project 15 78806821 78857163 + Gm10863 antisense antisense MGP_C3HHeJ_T0003545.1 MGP_C3HHeJ_G0003213.1 mouse_genomes_project 15 78806821 78869089 + Gm10863 antisense antisense MGP_C3HHeJ_T0003546.1 MGP_C3HHeJ_G0003213.1 mouse_genomes_project 15 78849962 78858504 + Gm10863 antisense antisense MGP_C3HHeJ_T0041690.1 MGP_C3HHeJ_G0021894.1 mouse_genomes_project 15 83049390 83074111 - MGP_C3HHeJ_P0041690 Poldip3 protein_coding protein_coding MGP_C3HHeJ_T0041691.1 MGP_C3HHeJ_G0021894.1 mouse_genomes_project 15 83049390 83074164 - MGP_C3HHeJ_P0041691 Poldip3 protein_coding protein_coding MGP_C3HHeJ_T0041692.1 MGP_C3HHeJ_G0021894.1 mouse_genomes_project 15 83056574 83074081 - MGP_C3HHeJ_P0041692 Poldip3 protein_coding protein_coding MGP_C3HHeJ_T0041693.1 MGP_C3HHeJ_G0021894.1 mouse_genomes_project 15 83056669 83059316 - Poldip3 protein_coding retained_intron MGP_C3HHeJ_T0041694.1 MGP_C3HHeJ_G0021894.1 mouse_genomes_project 15 83059092 83074109 - Poldip3 protein_coding retained_intron MGP_C3HHeJ_T0041695.1 MGP_C3HHeJ_G0021894.1 mouse_genomes_project 15 83061373 83074116 - Poldip3 protein_coding retained_intron MGP_C3HHeJ_T0040562.1 MGP_C3HHeJ_G0021554.1 mouse_genomes_project 15 37072268 37090701 - MGP_C3HHeJ_P0040562 Slc25a32 protein_coding protein_coding MGP_C3HHeJ_T0042429.1 MGP_C3HHeJ_G0022138.1 mouse_genomes_project 15 103403638 103428394 - MGP_C3HHeJ_P0042429 Rarg protein_coding protein_coding MGP_C3HHeJ_T0042430.1 MGP_C3HHeJ_G0022138.1 mouse_genomes_project 15 103403640 103416394 - MGP_C3HHeJ_P0042430 Rarg protein_coding protein_coding MGP_C3HHeJ_T0042431.1 MGP_C3HHeJ_G0022138.1 mouse_genomes_project 15 103409954 103428225 - MGP_C3HHeJ_P0042431 Rarg protein_coding protein_coding MGP_C3HHeJ_T0042432.1 MGP_C3HHeJ_G0022138.1 mouse_genomes_project 15 103411852 103413503 - Rarg protein_coding processed_transcript MGP_C3HHeJ_T0042433.1 MGP_C3HHeJ_G0022138.1 mouse_genomes_project 15 103411856 103415126 - Rarg protein_coding processed_transcript MGP_C3HHeJ_T0042434.1 MGP_C3HHeJ_G0022138.1 mouse_genomes_project 15 103411856 103421219 - Rarg protein_coding processed_transcript MGP_C3HHeJ_T0040578.1 MGP_C3HHeJ_G0021561.1 mouse_genomes_project 15 38636516 39107706 + MGP_C3HHeJ_P0040578 Zfpm2 protein_coding protein_coding MGP_C3HHeJ_T0040642.1 MGP_C3HHeJ_G0021591.1 mouse_genomes_project 15 53308104 53398496 - MGP_C3HHeJ_P0040642 Enpp2 protein_coding protein_coding MGP_C3HHeJ_T0040643.1 MGP_C3HHeJ_G0021591.1 mouse_genomes_project 15 53308107 53398352 - MGP_C3HHeJ_P0040643 Enpp2 protein_coding protein_coding MGP_C3HHeJ_T0040644.1 MGP_C3HHeJ_G0021591.1 mouse_genomes_project 15 53308475 53398368 - MGP_C3HHeJ_P0040644 Enpp2 protein_coding protein_coding MGP_C3HHeJ_T0040645.1 MGP_C3HHeJ_G0021591.1 mouse_genomes_project 15 53308572 53398311 - MGP_C3HHeJ_P0040645 Enpp2 protein_coding protein_coding MGP_C3HHeJ_T0041638.1 MGP_C3HHeJ_G0021874.1 mouse_genomes_project 15 82018220 82021578 - MGP_C3HHeJ_P0041638 protein_coding protein_coding MGP_C3HHeJ_T0040469.1 MGP_C3HHeJ_G0021524.1 mouse_genomes_project 15 32392495 32426321 + MGP_C3HHeJ_P0040469 Pop1 protein_coding protein_coding MGP_C3HHeJ_T0040470.1 MGP_C3HHeJ_G0021524.1 mouse_genomes_project 15 32392514 32426310 + MGP_C3HHeJ_P0040470 Pop1 protein_coding protein_coding MGP_C3HHeJ_T0040471.1 MGP_C3HHeJ_G0021524.1 mouse_genomes_project 15 32406426 32408712 + Pop1 protein_coding retained_intron MGP_C3HHeJ_T0040472.1 MGP_C3HHeJ_G0021524.1 mouse_genomes_project 15 32410689 32414538 + Pop1 protein_coding processed_transcript MGP_C3HHeJ_T0040473.1 MGP_C3HHeJ_G0021524.1 mouse_genomes_project 15 32412309 32424834 + Pop1 protein_coding retained_intron MGP_C3HHeJ_T0040474.1 MGP_C3HHeJ_G0021524.1 mouse_genomes_project 15 32421817 32424904 + Pop1 protein_coding retained_intron MGP_C3HHeJ_T0100278.1 MGP_C3HHeJ_G0038472.1 mouse_genomes_project 15 100116942 100117075 - Gm25999 snoRNA snoRNA MGP_C3HHeJ_T0041472.1 MGP_C3HHeJ_G0021829.1 mouse_genomes_project 15 79675991 79696301 - MGP_C3HHeJ_P0041472 Pdgfb protein_coding protein_coding MGP_C3HHeJ_T0041501.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674141 80697623 + MGP_C3HHeJ_P0041501 Adsl protein_coding protein_coding MGP_C3HHeJ_T0041502.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674142 80695683 + MGP_C3HHeJ_P0041502 Adsl protein_coding protein_coding MGP_C3HHeJ_T0041503.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674155 80675764 + Adsl protein_coding retained_intron MGP_C3HHeJ_T0041504.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674163 80695794 + MGP_C3HHeJ_P0041504 Adsl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041505.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674170 80695423 + MGP_C3HHeJ_P0041505 Adsl protein_coding protein_coding MGP_C3HHeJ_T0041506.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674170 80691164 + MGP_C3HHeJ_P0041506 Adsl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041507.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674188 80692798 + MGP_C3HHeJ_P0041507 Adsl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041508.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674193 80682372 + Adsl protein_coding retained_intron MGP_C3HHeJ_T0041509.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80674428 80678771 + MGP_C3HHeJ_P0041509 Adsl protein_coding protein_coding MGP_C3HHeJ_T0041510.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80688407 80691039 + Adsl protein_coding retained_intron MGP_C3HHeJ_T0041511.1 MGP_C3HHeJ_G0021842.1 mouse_genomes_project 15 80691117 80695430 + MGP_C3HHeJ_P0041511 Adsl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041001.1 MGP_C3HHeJ_G0021704.1 mouse_genomes_project 15 75238231 75243422 - MGP_C3HHeJ_P0041001 Pycrl protein_coding protein_coding MGP_C3HHeJ_T0041114.1 MGP_C3HHeJ_G0021728.1 mouse_genomes_project 15 75702702 75705208 + MGP_C3HHeJ_P0041114 Hgh1 protein_coding protein_coding MGP_C3HHeJ_T0041308.1 MGP_C3HHeJ_G0021789.1 mouse_genomes_project 15 78374366 78393026 - MGP_C3HHeJ_P0041308 Mfng protein_coding protein_coding MGP_C3HHeJ_T0041309.1 MGP_C3HHeJ_G0021789.1 mouse_genomes_project 15 78380081 78386748 - Mfng protein_coding retained_intron MGP_C3HHeJ_T0041310.1 MGP_C3HHeJ_G0021789.1 mouse_genomes_project 15 78383457 78386722 - Mfng protein_coding retained_intron MGP_C3HHeJ_T0041311.1 MGP_C3HHeJ_G0021789.1 mouse_genomes_project 15 78386423 78391447 - Mfng protein_coding processed_transcript MGP_C3HHeJ_T0040646.1 MGP_C3HHeJ_G0021592.1 mouse_genomes_project 15 53494951 53553969 - MGP_C3HHeJ_P0040646 Taf2 protein_coding protein_coding MGP_C3HHeJ_T0041497.1 MGP_C3HHeJ_G0021839.1 mouse_genomes_project 15 80339453 80368901 + MGP_C3HHeJ_P0041497 Grap2 protein_coding protein_coding MGP_C3HHeJ_T0040266.1 MGP_C3HHeJ_G0021456.1 mouse_genomes_project 15 6292613 6337973 + Ugt3a1 protein_coding processed_transcript MGP_C3HHeJ_T0040267.1 MGP_C3HHeJ_G0021456.1 mouse_genomes_project 15 6307540 6342492 + MGP_C3HHeJ_P0040267 Ugt3a1 protein_coding protein_coding MGP_C3HHeJ_T0040268.1 MGP_C3HHeJ_G0021456.1 mouse_genomes_project 15 6307559 6333743 + Ugt3a1 protein_coding processed_transcript MGP_C3HHeJ_T0040269.1 MGP_C3HHeJ_G0021456.1 mouse_genomes_project 15 6307561 6333665 + Ugt3a1 protein_coding processed_transcript MGP_C3HHeJ_T0040270.1 MGP_C3HHeJ_G0021456.1 mouse_genomes_project 15 6311221 6320307 + MGP_C3HHeJ_P0040270 Ugt3a1 protein_coding protein_coding MGP_C3HHeJ_T0010011.1 MGP_C3HHeJ_G0008144.1 mouse_genomes_project 15 102687008 102687137 + Gm44460 miRNA miRNA MGP_C3HHeJ_T0040569.1 MGP_C3HHeJ_G0021557.1 mouse_genomes_project 15 37717592 37736526 + MGP_C3HHeJ_P0040569 Dcstamp protein_coding protein_coding MGP_C3HHeJ_T0040499.1 MGP_C3HHeJ_G0021537.1 mouse_genomes_project 15 34488418 34542708 - MGP_C3HHeJ_P0040499 Snx31 protein_coding protein_coding MGP_C3HHeJ_T0040500.1 MGP_C3HHeJ_G0021537.1 mouse_genomes_project 15 34488768 34542703 - MGP_C3HHeJ_P0040500 Snx31 protein_coding protein_coding MGP_C3HHeJ_T0040501.1 MGP_C3HHeJ_G0021537.1 mouse_genomes_project 15 34522223 34530389 - Snx31 protein_coding processed_transcript MGP_C3HHeJ_T0040502.1 MGP_C3HHeJ_G0021537.1 mouse_genomes_project 15 34522223 34530847 - MGP_C3HHeJ_P0040502 Snx31 protein_coding protein_coding MGP_C3HHeJ_T0009950.1 MGP_C3HHeJ_G0008083.1 mouse_genomes_project 15 33615412 33615490 - Mir875 miRNA miRNA MGP_C3HHeJ_T0041485.1 MGP_C3HHeJ_G0021834.1 mouse_genomes_project 15 79932430 79952662 + MGP_C3HHeJ_P0041485 Mief1 protein_coding protein_coding MGP_C3HHeJ_T0041486.1 MGP_C3HHeJ_G0021834.1 mouse_genomes_project 15 79932458 79949834 + MGP_C3HHeJ_P0041486 Mief1 protein_coding protein_coding MGP_C3HHeJ_T0042535.1 MGP_C3HHeJ_G0022166.1 mouse_genomes_project 15 104392467 104397165 - MGP_C3HHeJ_P0042535 Smug1 protein_coding protein_coding MGP_C3HHeJ_T0040275.1 MGP_C3HHeJ_G0021460.1 mouse_genomes_project 15 6592702 6770969 - MGP_C3HHeJ_P0040275 protein_coding protein_coding MGP_C3HHeJ_T0040276.1 MGP_C3HHeJ_G0021460.1 mouse_genomes_project 15 6592771 6770900 - MGP_C3HHeJ_P0040276 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040277.1 MGP_C3HHeJ_G0021460.1 mouse_genomes_project 15 6675293 6770999 - MGP_C3HHeJ_P0040277 protein_coding protein_coding MGP_C3HHeJ_T0040278.1 MGP_C3HHeJ_G0021460.1 mouse_genomes_project 15 6703946 6770951 - MGP_C3HHeJ_P0040278 protein_coding protein_coding MGP_C3HHeJ_T0040279.1 MGP_C3HHeJ_G0021460.1 mouse_genomes_project 15 6726177 6770951 - MGP_C3HHeJ_P0040279 protein_coding protein_coding MGP_C3HHeJ_T0040280.1 MGP_C3HHeJ_G0021460.1 mouse_genomes_project 15 6726180 6770908 - MGP_C3HHeJ_P0040280 protein_coding protein_coding MGP_C3HHeJ_T0040524.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35403648 35846696 - MGP_C3HHeJ_P0040524 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040525.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35403648 35847129 - MGP_C3HHeJ_P0040525 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040526.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35403691 35501858 - MGP_C3HHeJ_P0040526 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040527.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35403740 35501847 - MGP_C3HHeJ_P0040527 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040528.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35406097 35501039 - MGP_C3HHeJ_P0040528 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040529.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35406361 35786935 - MGP_C3HHeJ_P0040529 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040530.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35409584 35846696 - MGP_C3HHeJ_P0040530 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040531.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35419702 35501830 - Ncald protein_coding processed_transcript MGP_C3HHeJ_T0040532.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35439172 35847266 - MGP_C3HHeJ_P0040532 Ncald protein_coding protein_coding MGP_C3HHeJ_T0040534.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35474942 35786636 - Ncald protein_coding processed_transcript MGP_C3HHeJ_T0040535.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35670940 35786935 - Ncald protein_coding processed_transcript MGP_C3HHeJ_T0040536.1 MGP_C3HHeJ_G0021543.1 mouse_genomes_project 15 35672307 35846935 - Ncald protein_coding processed_transcript MGP_C3HHeJ_T0040625.1 MGP_C3HHeJ_G0021580.1 mouse_genomes_project 15 50401812 50434293 - MGP_C3HHeJ_P0040625 Rad21 protein_coding protein_coding MGP_C3HHeJ_T0040251.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6096334 6136936 + Nadk2 protein_coding processed_transcript MGP_C3HHeJ_T0040252.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6096334 6136936 + MGP_C3HHeJ_P0040252 Nadk2 protein_coding protein_coding MGP_C3HHeJ_T0040253.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6096334 6136936 + MGP_C3HHeJ_P0040253 Nadk2 protein_coding protein_coding MGP_C3HHeJ_T0040254.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6096576 6135015 + MGP_C3HHeJ_P0040254 Nadk2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040255.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6096755 6136390 + Nadk2 protein_coding processed_transcript MGP_C3HHeJ_T0040256.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6096761 6133832 + Nadk2 protein_coding processed_transcript MGP_C3HHeJ_T0040257.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6110951 6133497 + Nadk2 protein_coding processed_transcript MGP_C3HHeJ_T0040258.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6125009 6133838 + MGP_C3HHeJ_P0040258 Nadk2 protein_coding protein_coding MGP_C3HHeJ_T0040259.1 MGP_C3HHeJ_G0021453.1 mouse_genomes_project 15 6127857 6133430 + Nadk2 protein_coding retained_intron MGP_C3HHeJ_T0040657.1 MGP_C3HHeJ_G0021596.1 mouse_genomes_project 15 53806054 54019536 + MGP_C3HHeJ_P0040657 Col14a1 protein_coding protein_coding MGP_C3HHeJ_T0040658.1 MGP_C3HHeJ_G0021596.1 mouse_genomes_project 15 53806054 54019537 + MGP_C3HHeJ_P0040658 Col14a1 protein_coding protein_coding MGP_C3HHeJ_T0040659.1 MGP_C3HHeJ_G0021596.1 mouse_genomes_project 15 53806055 54019535 + MGP_C3HHeJ_P0040659 Col14a1 protein_coding protein_coding MGP_C3HHeJ_T0040660.1 MGP_C3HHeJ_G0021596.1 mouse_genomes_project 15 53946021 54018423 + MGP_C3HHeJ_P0040660 Col14a1 protein_coding protein_coding MGP_C3HHeJ_T0041135.1 MGP_C3HHeJ_G0021733.1 mouse_genomes_project 15 75815083 75839453 + MGP_C3HHeJ_P0041135 Hsf1 protein_coding protein_coding MGP_C3HHeJ_T0041136.1 MGP_C3HHeJ_G0021733.1 mouse_genomes_project 15 75815239 75839103 + MGP_C3HHeJ_P0041136 Hsf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003563.1 MGP_C3HHeJ_G0003228.1 mouse_genomes_project 15 100657010 100675512 + Gm17058 antisense antisense MGP_C3HHeJ_T0042404.1 MGP_C3HHeJ_G0022127.1 mouse_genomes_project 15 103088477 103098393 - MGP_C3HHeJ_P0042404 Krt78 protein_coding protein_coding MGP_C3HHeJ_T0041775.1 MGP_C3HHeJ_G0021921.1 mouse_genomes_project 15 85042050 85047470 + MGP_C3HHeJ_P0041775 Upk3a protein_coding protein_coding MGP_C3HHeJ_T0040591.1 MGP_C3HHeJ_G0021569.1 mouse_genomes_project 15 42305446 42345953 + MGP_C3HHeJ_P0040591 Trhr protein_coding protein_coding MGP_C3HHeJ_T0040592.1 MGP_C3HHeJ_G0021569.1 mouse_genomes_project 15 42305544 42344204 + MGP_C3HHeJ_P0040592 Trhr protein_coding protein_coding MGP_C3HHeJ_T0041306.1 MGP_C3HHeJ_G0021787.1 mouse_genomes_project 15 78207686 78233537 + MGP_C3HHeJ_P0041306 Cyth4 protein_coding protein_coding MGP_C3HHeJ_T0042203.1 MGP_C3HHeJ_G0022059.1 mouse_genomes_project 15 100133908 100150976 - MGP_C3HHeJ_P0042203 Fam186b protein_coding protein_coding MGP_C3HHeJ_T0040294.1 MGP_C3HHeJ_G0021463.1 mouse_genomes_project 15 7402524 7423939 + MGP_C3HHeJ_P0040294 Agxt2 protein_coding protein_coding MGP_C3HHeJ_T0040295.1 MGP_C3HHeJ_G0021463.1 mouse_genomes_project 15 7402529 7458149 + MGP_C3HHeJ_P0040295 Agxt2 protein_coding protein_coding MGP_C3HHeJ_T0040296.1 MGP_C3HHeJ_G0021463.1 mouse_genomes_project 15 7402529 7430591 + MGP_C3HHeJ_P0040296 Agxt2 protein_coding protein_coding MGP_C3HHeJ_T0040297.1 MGP_C3HHeJ_G0021463.1 mouse_genomes_project 15 7402571 7457734 + MGP_C3HHeJ_P0040297 Agxt2 protein_coding protein_coding MGP_C3HHeJ_T0099005.1 MGP_C3HHeJ_G0037199.1 mouse_genomes_project 15 81354098 81354205 + Gm22067 snRNA snRNA MGP_C3HHeJ_T0012954.1 MGP_C3HHeJ_G0011058.1 mouse_genomes_project 15 77162254 77163182 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041706.1 MGP_C3HHeJ_G0021899.1 mouse_genomes_project 15 83426454 83454827 - MGP_C3HHeJ_P0041706 Ttll1 protein_coding protein_coding MGP_C3HHeJ_T0041707.1 MGP_C3HHeJ_G0021899.1 mouse_genomes_project 15 83445258 83454728 - MGP_C3HHeJ_P0041707 Ttll1 protein_coding protein_coding MGP_C3HHeJ_T0041708.1 MGP_C3HHeJ_G0021899.1 mouse_genomes_project 15 83449650 83454818 - Ttll1 protein_coding processed_transcript MGP_C3HHeJ_T0042523.1 MGP_C3HHeJ_G0022160.1 mouse_genomes_project 15 104191387 104196472 + MGP_C3HHeJ_P0042523 Hoxc10 protein_coding protein_coding MGP_C3HHeJ_T0009989.1 MGP_C3HHeJ_G0008122.1 mouse_genomes_project 15 82500768 82500828 - Gm27742 miRNA miRNA MGP_C3HHeJ_T0003569.1 MGP_C3HHeJ_G0003232.1 mouse_genomes_project 15 101612462 101618405 + Gm20680 antisense antisense MGP_C3HHeJ_T0040383.1 MGP_C3HHeJ_G0021490.1 mouse_genomes_project 15 22771641 22783422 - MGP_C3HHeJ_P0040383 9230109A22Rik protein_coding protein_coding MGP_C3HHeJ_T0041344.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78692785 78702577 - MGP_C3HHeJ_P0041344 Ankrd54 protein_coding protein_coding MGP_C3HHeJ_T0041345.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78692795 78702577 - Ankrd54 protein_coding retained_intron MGP_C3HHeJ_T0041346.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78693265 78695105 - MGP_C3HHeJ_P0041346 Ankrd54 protein_coding protein_coding MGP_C3HHeJ_T0041347.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78693459 78695036 - MGP_C3HHeJ_P0041347 Ankrd54 protein_coding protein_coding MGP_C3HHeJ_T0041348.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78695077 78702574 - MGP_C3HHeJ_P0041348 Ankrd54 protein_coding protein_coding MGP_C3HHeJ_T0041349.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78695106 78702528 - MGP_C3HHeJ_P0041349 Ankrd54 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041350.1 MGP_C3HHeJ_G0021800.1 mouse_genomes_project 15 78699312 78702585 - Ankrd54 protein_coding retained_intron MGP_C3HHeJ_T0041206.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76067141 76165892 - MGP_C3HHeJ_P0041206 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0041207.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76067141 76165979 - MGP_C3HHeJ_P0041207 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0041208.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76068016 76068760 - Arhgap39 protein_coding retained_intron MGP_C3HHeJ_T0041209.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76076566 76165938 - Arhgap39 protein_coding retained_intron MGP_C3HHeJ_T0041210.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76094730 76139050 - MGP_C3HHeJ_P0041210 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0041211.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76101569 76165915 - MGP_C3HHeJ_P0041211 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0041212.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76101573 76165805 - MGP_C3HHeJ_P0041212 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0041213.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76109444 76165950 - Arhgap39 protein_coding retained_intron MGP_C3HHeJ_T0041214.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76109893 76165779 - MGP_C3HHeJ_P0041214 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0041215.1 MGP_C3HHeJ_G0021751.1 mouse_genomes_project 15 76109909 76165885 - MGP_C3HHeJ_P0041215 Arhgap39 protein_coding protein_coding MGP_C3HHeJ_T0042259.1 MGP_C3HHeJ_G0022072.1 mouse_genomes_project 15 100587028 100600960 + MGP_C3HHeJ_P0042259 Smarcd1 protein_coding protein_coding MGP_C3HHeJ_T0040330.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9244964 9319221 + MGP_C3HHeJ_P0040330 Zfr protein_coding protein_coding MGP_C3HHeJ_T0040331.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9244984 9277835 + MGP_C3HHeJ_P0040331 Zfr protein_coding protein_coding MGP_C3HHeJ_T0040332.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9244992 9269657 + MGP_C3HHeJ_P0040332 Zfr protein_coding protein_coding MGP_C3HHeJ_T0040333.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9244999 9249458 + Zfr protein_coding processed_transcript MGP_C3HHeJ_T0040334.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9291237 9297839 + MGP_C3HHeJ_P0040334 Zfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040335.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9292158 9317531 + MGP_C3HHeJ_P0040335 Zfr protein_coding protein_coding MGP_C3HHeJ_T0040336.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9297777 9318001 + MGP_C3HHeJ_P0040336 Zfr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040337.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9301894 9303405 + Zfr protein_coding retained_intron MGP_C3HHeJ_T0040338.1 MGP_C3HHeJ_G0021477.1 mouse_genomes_project 15 9312108 9318001 + Zfr protein_coding processed_transcript MGP_C3HHeJ_T0100276.1 MGP_C3HHeJ_G0038470.1 mouse_genomes_project 15 99305187 99305324 - Snora2b snoRNA snoRNA MGP_C3HHeJ_T0010013.1 MGP_C3HHeJ_G0008146.1 mouse_genomes_project 15 102744730 102809447 + miRNA miRNA MGP_C3HHeJ_T0041099.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682607 75685686 + MGP_C3HHeJ_P0041099 Maf1 protein_coding protein_coding MGP_C3HHeJ_T0041100.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682607 75685687 + MGP_C3HHeJ_P0041100 Maf1 protein_coding protein_coding MGP_C3HHeJ_T0041101.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682619 75685687 + MGP_C3HHeJ_P0041101 Maf1 protein_coding protein_coding MGP_C3HHeJ_T0041102.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682622 75684320 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041103.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682640 75683761 + Maf1 protein_coding processed_transcript MGP_C3HHeJ_T0041104.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682640 75685694 + MGP_C3HHeJ_P0041104 Maf1 protein_coding protein_coding MGP_C3HHeJ_T0041105.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682666 75683381 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041106.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75682722 75684213 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041107.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75683319 75684500 + MGP_C3HHeJ_P0041107 Maf1 protein_coding protein_coding MGP_C3HHeJ_T0041108.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75683347 75684214 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041109.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75684083 75685305 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041110.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75684207 75685340 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041111.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75684414 75685387 + Maf1 protein_coding retained_intron MGP_C3HHeJ_T0041112.1 MGP_C3HHeJ_G0021726.1 mouse_genomes_project 15 75684728 75685429 + MGP_C3HHeJ_P0041112 Maf1 protein_coding protein_coding MGP_C3HHeJ_T0041887.1 MGP_C3HHeJ_G0021957.1 mouse_genomes_project 15 89460977 89475239 - MGP_C3HHeJ_P0041887 Dennd6b protein_coding protein_coding MGP_C3HHeJ_T0040503.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34584580 34599093 - MGP_C3HHeJ_P0040503 Pabpc1 protein_coding protein_coding MGP_C3HHeJ_T0040504.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34585553 34587562 - MGP_C3HHeJ_P0040504 Pabpc1 protein_coding protein_coding MGP_C3HHeJ_T0040505.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34585566 34587855 - Pabpc1 protein_coding processed_transcript MGP_C3HHeJ_T0040506.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34585566 34586969 - Pabpc1 protein_coding processed_transcript MGP_C3HHeJ_T0040507.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34585743 34587279 - Pabpc1 protein_coding processed_transcript MGP_C3HHeJ_T0040508.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34587843 34591889 - Pabpc1 protein_coding processed_transcript MGP_C3HHeJ_T0040509.1 MGP_C3HHeJ_G0021538.1 mouse_genomes_project 15 34593038 34599093 - Pabpc1 protein_coding processed_transcript MGP_C3HHeJ_T0003564.1 MGP_C3HHeJ_G0003229.1 mouse_genomes_project 15 100716032 100730888 + Gm17057 antisense antisense MGP_C3HHeJ_T0098997.1 MGP_C3HHeJ_G0037191.1 mouse_genomes_project 15 71756839 71756906 - Gm28020 snRNA snRNA MGP_C3HHeJ_T0006719.1 MGP_C3HHeJ_G0005535.1 mouse_genomes_project 15 96843883 96871389 - 4833422M21Rik lincRNA lincRNA MGP_C3HHeJ_T0006720.1 MGP_C3HHeJ_G0005535.1 mouse_genomes_project 15 96843883 96854630 - 4833422M21Rik lincRNA lincRNA MGP_C3HHeJ_T0006721.1 MGP_C3HHeJ_G0005535.1 mouse_genomes_project 15 96864209 96871321 - 4833422M21Rik lincRNA lincRNA MGP_C3HHeJ_T0040777.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656021 64660340 + Efr3a protein_coding processed_transcript MGP_C3HHeJ_T0040778.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656027 64744458 + MGP_C3HHeJ_P0040778 Efr3a protein_coding protein_coding MGP_C3HHeJ_T0040779.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656028 64659823 + Efr3a protein_coding processed_transcript MGP_C3HHeJ_T0040780.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656028 64739883 + MGP_C3HHeJ_P0040780 Efr3a protein_coding protein_coding MGP_C3HHeJ_T0040781.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656029 64699567 + Efr3a protein_coding processed_transcript MGP_C3HHeJ_T0040782.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656033 64695226 + MGP_C3HHeJ_P0040782 Efr3a protein_coding protein_coding MGP_C3HHeJ_T0040783.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656035 64692299 + Efr3a protein_coding retained_intron MGP_C3HHeJ_T0040784.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656035 64689622 + MGP_C3HHeJ_P0040784 Efr3a protein_coding protein_coding MGP_C3HHeJ_T0040785.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64656827 64659829 + Efr3a protein_coding processed_transcript MGP_C3HHeJ_T0040786.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64720198 64727081 + Efr3a protein_coding retained_intron MGP_C3HHeJ_T0040787.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64725750 64727985 + Efr3a protein_coding retained_intron MGP_C3HHeJ_T0040788.1 MGP_C3HHeJ_G0021639.1 mouse_genomes_project 15 64727756 64737430 + Efr3a protein_coding retained_intron MGP_C3HHeJ_T0040547.1 MGP_C3HHeJ_G0021547.1 mouse_genomes_project 15 36289304 36296819 + MGP_C3HHeJ_P0040547 Odf1 protein_coding protein_coding MGP_C3HHeJ_T0000903.1 MGP_C3HHeJ_G0000843.1 mouse_genomes_project 15 5686539 5689507 - TEC TEC MGP_C3HHeJ_T0041822.1 MGP_C3HHeJ_G0021938.1 mouse_genomes_project 15 86324454 86613347 + MGP_C3HHeJ_P0041822 Tbc1d22a protein_coding protein_coding MGP_C3HHeJ_T0040799.1 MGP_C3HHeJ_G0021644.1 mouse_genomes_project 15 65408734 65444078 - MGP_C3HHeJ_P0040799 Tmem71 protein_coding protein_coding MGP_C3HHeJ_T0003532.1 MGP_C3HHeJ_G0003204.1 mouse_genomes_project 15 64940754 64962591 + Gm27153 antisense antisense MGP_C3HHeJ_T0040603.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 45779555 47085204 - MGP_C3HHeJ_P0040603 Csmd3 protein_coding protein_coding MGP_C3HHeJ_T0040604.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 45779556 47085260 - MGP_C3HHeJ_P0040604 Csmd3 protein_coding protein_coding MGP_C3HHeJ_T0040605.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 45779640 47085334 - MGP_C3HHeJ_P0040605 Csmd3 protein_coding protein_coding MGP_C3HHeJ_T0040606.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 45780639 46239008 - MGP_C3HHeJ_P0040606 Csmd3 protein_coding protein_coding MGP_C3HHeJ_T0040607.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 45780642 45814252 - Csmd3 protein_coding retained_intron MGP_C3HHeJ_T0040608.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 45829347 45834384 - Csmd3 protein_coding retained_intron MGP_C3HHeJ_T0040609.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 46171475 46185954 - Csmd3 protein_coding retained_intron MGP_C3HHeJ_T0040610.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 46503607 47085260 - Csmd3 protein_coding processed_transcript MGP_C3HHeJ_T0040611.1 MGP_C3HHeJ_G0021576.1 mouse_genomes_project 15 46534078 47085260 - Csmd3 protein_coding retained_intron MGP_C3HHeJ_T0042243.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100499373 100530855 - MGP_C3HHeJ_P0042243 Racgap1 protein_coding protein_coding MGP_C3HHeJ_T0042244.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100499374 100530868 - MGP_C3HHeJ_P0042244 Racgap1 protein_coding protein_coding MGP_C3HHeJ_T0042245.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100504999 100512071 - Racgap1 protein_coding retained_intron MGP_C3HHeJ_T0042246.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100505279 100530801 - Racgap1 protein_coding processed_transcript MGP_C3HHeJ_T0042247.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100507824 100530794 - Racgap1 protein_coding retained_intron MGP_C3HHeJ_T0042248.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100507884 100519085 - MGP_C3HHeJ_P0042248 Racgap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042249.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100507930 100517536 - Racgap1 protein_coding retained_intron MGP_C3HHeJ_T0042250.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100511409 100530864 - MGP_C3HHeJ_P0042250 Racgap1 protein_coding protein_coding MGP_C3HHeJ_T0042251.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100511425 100514042 - Racgap1 protein_coding retained_intron MGP_C3HHeJ_T0042252.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100513560 100530781 - MGP_C3HHeJ_P0042252 Racgap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042253.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100515422 100530824 - MGP_C3HHeJ_P0042253 Racgap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042254.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100516726 100530794 - Racgap1 protein_coding retained_intron MGP_C3HHeJ_T0042255.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100516940 100530824 - MGP_C3HHeJ_P0042255 Racgap1 protein_coding protein_coding MGP_C3HHeJ_T0042256.1 MGP_C3HHeJ_G0022069.1 mouse_genomes_project 15 100519066 100530855 - MGP_C3HHeJ_P0042256 Racgap1 protein_coding protein_coding MGP_C3HHeJ_T0041629.1 MGP_C3HHeJ_G0021869.1 mouse_genomes_project 15 81847256 81854634 + MGP_C3HHeJ_P0041629 4930407I10Rik protein_coding protein_coding MGP_C3HHeJ_T0011307.1 MGP_C3HHeJ_G0009440.1 mouse_genomes_project 15 104174388 104174545 + Gm27535 misc_RNA misc_RNA MGP_C3HHeJ_T0042552.1 MGP_C3HHeJ_G0022170.1 mouse_genomes_project 15 104528113 104556396 + MGP_C3HHeJ_P0042552 Copz1 protein_coding protein_coding MGP_C3HHeJ_T0040585.1 MGP_C3HHeJ_G0021563.1 mouse_genomes_project 15 39925543 39929953 - MGP_C3HHeJ_P0040585 Abra protein_coding protein_coding MGP_C3HHeJ_T0042224.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259070 100277136 + MGP_C3HHeJ_P0042224 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042225.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259174 100275721 + MGP_C3HHeJ_P0042225 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042226.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259174 100275623 + MGP_C3HHeJ_P0042226 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042227.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259210 100275578 + MGP_C3HHeJ_P0042227 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042228.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259407 100275622 + MGP_C3HHeJ_P0042228 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042229.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259781 100273761 + MGP_C3HHeJ_P0042229 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042230.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100259799 100275697 + MGP_C3HHeJ_P0042230 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042231.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100267858 100268876 + MGP_C3HHeJ_P0042231 Tmbim6 protein_coding protein_coding MGP_C3HHeJ_T0042232.1 MGP_C3HHeJ_G0022062.1 mouse_genomes_project 15 100272810 100275878 + Tmbim6 protein_coding retained_intron MGP_C3HHeJ_T0040406.1 MGP_C3HHeJ_G0021498.1 mouse_genomes_project 15 25178445 25312717 + MGP_C3HHeJ_P0040406 Ank protein_coding protein_coding MGP_C3HHeJ_T0040407.1 MGP_C3HHeJ_G0021498.1 mouse_genomes_project 15 25289252 25310971 + Ank protein_coding retained_intron MGP_C3HHeJ_T0012942.1 MGP_C3HHeJ_G0011046.1 mouse_genomes_project 15 58633000 58633450 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040800.1 MGP_C3HHeJ_G0021645.1 mouse_genomes_project 15 65460693 65529879 + MGP_C3HHeJ_P0040800 Phf20l1 protein_coding protein_coding MGP_C3HHeJ_T0100233.1 MGP_C3HHeJ_G0038427.1 mouse_genomes_project 15 3099077 3099209 - Gm23139 snoRNA snoRNA MGP_C3HHeJ_T0042132.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156742 99171550 + MGP_C3HHeJ_P0042132 1700031M16Rik protein_coding protein_coding MGP_C3HHeJ_T0042133.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156749 99174274 + MGP_C3HHeJ_P0042133 1700031M16Rik protein_coding protein_coding MGP_C3HHeJ_T0042134.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156768 99170751 + 1700031M16Rik protein_coding processed_transcript MGP_C3HHeJ_T0042135.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156768 99173394 + 1700031M16Rik protein_coding processed_transcript MGP_C3HHeJ_T0042136.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156768 99173394 + 1700031M16Rik protein_coding processed_transcript MGP_C3HHeJ_T0042137.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156768 99174145 + MGP_C3HHeJ_P0042137 1700031M16Rik protein_coding protein_coding MGP_C3HHeJ_T0042138.1 MGP_C3HHeJ_G0022029.1 mouse_genomes_project 15 99156768 99174278 + MGP_C3HHeJ_P0042138 1700031M16Rik protein_coding protein_coding MGP_C3HHeJ_T0012943.1 MGP_C3HHeJ_G0011047.1 mouse_genomes_project 15 58649814 58650821 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041191.1 MGP_C3HHeJ_G0021748.1 mouse_genomes_project 15 76046722 76053498 - MGP_C3HHeJ_P0041191 Recql4 protein_coding protein_coding MGP_C3HHeJ_T0041011.1 MGP_C3HHeJ_G0021709.1 mouse_genomes_project 15 75315501 75317557 + Mapk15 protein_coding processed_transcript MGP_C3HHeJ_T0041012.1 MGP_C3HHeJ_G0021709.1 mouse_genomes_project 15 75315501 75320885 + MGP_C3HHeJ_P0041012 Mapk15 protein_coding protein_coding MGP_C3HHeJ_T0041013.1 MGP_C3HHeJ_G0021709.1 mouse_genomes_project 15 75317671 75320885 + Mapk15 protein_coding retained_intron MGP_C3HHeJ_T0041014.1 MGP_C3HHeJ_G0021709.1 mouse_genomes_project 15 75318445 75320885 + Mapk15 protein_coding processed_transcript MGP_C3HHeJ_T0040438.1 MGP_C3HHeJ_G0021513.1 mouse_genomes_project 15 30087952 30547532 + MGP_C3HHeJ_P0040438 Sema5a protein_coding protein_coding MGP_C3HHeJ_T0041055.1 MGP_C3HHeJ_G0021717.1 mouse_genomes_project 15 75557181 75559731 - MGP_C3HHeJ_P0041055 Parp10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041056.1 MGP_C3HHeJ_G0021717.1 mouse_genomes_project 15 75559010 75569482 - Parp10 protein_coding retained_intron MGP_C3HHeJ_T0041057.1 MGP_C3HHeJ_G0021717.1 mouse_genomes_project 15 75559010 75569468 - MGP_C3HHeJ_P0041057 Parp10 protein_coding protein_coding MGP_C3HHeJ_T0041058.1 MGP_C3HHeJ_G0021717.1 mouse_genomes_project 15 75559010 75569489 - MGP_C3HHeJ_P0041058 Parp10 protein_coding protein_coding MGP_C3HHeJ_T0041059.1 MGP_C3HHeJ_G0021717.1 mouse_genomes_project 15 75559397 75560261 - Parp10 protein_coding processed_transcript MGP_C3HHeJ_T0041060.1 MGP_C3HHeJ_G0021717.1 mouse_genomes_project 15 75559746 75560481 - Parp10 protein_coding retained_intron MGP_C3HHeJ_T0040163.1 MGP_C3HHeJ_G0021428.1 mouse_genomes_project 15 916816 1053682 + MGP_C3HHeJ_P0040163 Oxct1 protein_coding protein_coding MGP_C3HHeJ_T0040164.1 MGP_C3HHeJ_G0021428.1 mouse_genomes_project 15 917117 1052301 + MGP_C3HHeJ_P0040164 Oxct1 protein_coding protein_coding MGP_C3HHeJ_T0040165.1 MGP_C3HHeJ_G0021428.1 mouse_genomes_project 15 937692 985303 + Oxct1 protein_coding processed_transcript MGP_C3HHeJ_T0040166.1 MGP_C3HHeJ_G0021428.1 mouse_genomes_project 15 1039801 1052318 + Oxct1 protein_coding processed_transcript MGP_C3HHeJ_T0040167.1 MGP_C3HHeJ_G0021428.1 mouse_genomes_project 15 1040090 1052297 + Oxct1 protein_coding processed_transcript MGP_C3HHeJ_T0041890.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89581614 89608967 - MGP_C3HHeJ_P0041890 Sbf1 protein_coding protein_coding MGP_C3HHeJ_T0041891.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89581661 89608911 - MGP_C3HHeJ_P0041891 Sbf1 protein_coding protein_coding MGP_C3HHeJ_T0041892.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89581664 89608927 - MGP_C3HHeJ_P0041892 Sbf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041893.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89581665 89588422 - MGP_C3HHeJ_P0041893 Sbf1 protein_coding protein_coding MGP_C3HHeJ_T0041894.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89581934 89582337 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041895.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89582004 89590593 - MGP_C3HHeJ_P0041895 Sbf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041896.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89583113 89587935 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041897.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89588125 89589776 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041898.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89593377 89594121 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041899.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89594215 89596291 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041900.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89595943 89596995 - MGP_C3HHeJ_P0041900 Sbf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041901.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89596753 89598756 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041902.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89598548 89600278 - Sbf1 protein_coding retained_intron MGP_C3HHeJ_T0041903.1 MGP_C3HHeJ_G0021959.1 mouse_genomes_project 15 89599671 89601461 - MGP_C3HHeJ_P0041903 Sbf1 protein_coding protein_coding MGP_C3HHeJ_T0041729.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83825548 84029538 - MGP_C3HHeJ_P0041729 Efcab6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041730.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83825554 84029484 - MGP_C3HHeJ_P0041730 Efcab6 protein_coding protein_coding MGP_C3HHeJ_T0041731.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83825556 83880011 - Efcab6 protein_coding processed_transcript MGP_C3HHeJ_T0041732.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83825609 83892921 - Efcab6 protein_coding retained_intron MGP_C3HHeJ_T0041733.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83831214 83843636 - Efcab6 protein_coding processed_transcript MGP_C3HHeJ_T0041734.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83884651 83903423 - MGP_C3HHeJ_P0041734 Efcab6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041735.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83923415 83926060 - Efcab6 protein_coding processed_transcript MGP_C3HHeJ_T0041736.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83930700 83947116 - Efcab6 protein_coding processed_transcript MGP_C3HHeJ_T0041737.1 MGP_C3HHeJ_G0021906.1 mouse_genomes_project 15 83981755 84029514 - Efcab6 protein_coding processed_transcript MGP_C3HHeJ_T0042292.1 MGP_C3HHeJ_G0022083.1 mouse_genomes_project 15 101295271 101391557 + MGP_C3HHeJ_P0042292 Methig1 protein_coding protein_coding MGP_C3HHeJ_T0042293.1 MGP_C3HHeJ_G0022083.1 mouse_genomes_project 15 101295288 101391430 + MGP_C3HHeJ_P0042293 Methig1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040239.1 MGP_C3HHeJ_G0021450.1 mouse_genomes_project 15 5307675 5466073 - MGP_C3HHeJ_P0040239 Nipbl protein_coding protein_coding MGP_C3HHeJ_T0097864.1 MGP_C3HHeJ_G0036076.1 mouse_genomes_project 15 42999276 43000952 + pseudogene pseudogene MGP_C3HHeJ_T0099013.1 MGP_C3HHeJ_G0037207.1 mouse_genomes_project 15 96187757 96187861 - Gm24668 snRNA snRNA MGP_C3HHeJ_T0003556.1 MGP_C3HHeJ_G0003221.1 mouse_genomes_project 15 98455732 98466769 + antisense antisense MGP_C3HHeJ_T0011303.1 MGP_C3HHeJ_G0009436.1 mouse_genomes_project 15 103673849 103674031 + Gm27406 misc_RNA misc_RNA MGP_C3HHeJ_T0041668.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83009553 83023894 + Serhl protein_coding processed_transcript MGP_C3HHeJ_T0041669.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83012920 83024124 + MGP_C3HHeJ_P0041669 Serhl protein_coding protein_coding MGP_C3HHeJ_T0041670.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83018780 83025133 + Serhl protein_coding processed_transcript MGP_C3HHeJ_T0041671.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83022319 83040244 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041672.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83022369 83025169 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041673.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83022395 83025194 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041674.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83022400 83024751 + MGP_C3HHeJ_P0041674 Serhl protein_coding protein_coding MGP_C3HHeJ_T0041675.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83022400 83040247 + MGP_C3HHeJ_P0041675 Serhl protein_coding protein_coding MGP_C3HHeJ_T0041676.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83022450 83040252 + MGP_C3HHeJ_P0041676 Serhl protein_coding protein_coding MGP_C3HHeJ_T0041677.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83023691 83025329 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041678.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83025816 83037606 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041679.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83026038 83030459 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041680.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83026040 83027909 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041681.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83026480 83036355 + MGP_C3HHeJ_P0041681 Serhl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041682.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83028689 83039965 + Serhl protein_coding processed_transcript MGP_C3HHeJ_T0041683.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83034810 83040102 + Serhl protein_coding processed_transcript MGP_C3HHeJ_T0041685.1 MGP_C3HHeJ_G0021892.1 mouse_genomes_project 15 83037436 83040230 + Serhl protein_coding retained_intron MGP_C3HHeJ_T0041496.1 MGP_C3HHeJ_G0021838.1 mouse_genomes_project 15 80160007 80276610 - MGP_C3HHeJ_P0041496 Enthd1 protein_coding protein_coding MGP_C3HHeJ_T0042062.1 MGP_C3HHeJ_G0022010.1 mouse_genomes_project 15 97898384 98053472 + MGP_C3HHeJ_P0042062 Pced1b protein_coding protein_coding MGP_C3HHeJ_T0100247.1 MGP_C3HHeJ_G0038441.1 mouse_genomes_project 15 32164293 32164345 - Gm25809 snoRNA snoRNA MGP_C3HHeJ_T0101759.1 MGP_C3HHeJ_G0039724.1 mouse_genomes_project 15 74547527 74551070 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0009970.1 MGP_C3HHeJ_G0008103.1 mouse_genomes_project 15 75769681 75769741 + Mir6954 miRNA miRNA MGP_C3HHeJ_T0041595.1 MGP_C3HHeJ_G0021862.1 mouse_genomes_project 15 81651651 81698910 + MGP_C3HHeJ_P0041595 Aco2 protein_coding protein_coding MGP_C3HHeJ_T0041596.1 MGP_C3HHeJ_G0021862.1 mouse_genomes_project 15 81651826 81669534 + Aco2 protein_coding retained_intron MGP_C3HHeJ_T0041597.1 MGP_C3HHeJ_G0021862.1 mouse_genomes_project 15 81651826 81669535 + Aco2 protein_coding processed_transcript MGP_C3HHeJ_T0041598.1 MGP_C3HHeJ_G0021862.1 mouse_genomes_project 15 81690307 81694288 + Aco2 protein_coding retained_intron MGP_C3HHeJ_T0041599.1 MGP_C3HHeJ_G0021862.1 mouse_genomes_project 15 81690587 81693942 + Aco2 protein_coding retained_intron MGP_C3HHeJ_T0041600.1 MGP_C3HHeJ_G0021862.1 mouse_genomes_project 15 81694067 81697070 + Aco2 protein_coding retained_intron MGP_C3HHeJ_T0040676.1 MGP_C3HHeJ_G0021601.1 mouse_genomes_project 15 55789288 55811364 - MGP_C3HHeJ_P0040676 Slc22a22 protein_coding protein_coding MGP_C3HHeJ_T0040677.1 MGP_C3HHeJ_G0021601.1 mouse_genomes_project 15 55789292 56010800 - MGP_C3HHeJ_P0040677 Slc22a22 protein_coding protein_coding MGP_C3HHeJ_T0040678.1 MGP_C3HHeJ_G0021601.1 mouse_genomes_project 15 55802342 55811340 - MGP_C3HHeJ_P0040678 Slc22a22 protein_coding protein_coding MGP_C3HHeJ_T0042044.1 MGP_C3HHeJ_G0022000.1 mouse_genomes_project 15 96380196 96383642 - MGP_C3HHeJ_P0042044 A130051J06Rik protein_coding protein_coding MGP_C3HHeJ_T0009980.1 MGP_C3HHeJ_G0008113.1 mouse_genomes_project 15 80665321 80665403 + Mir5113 miRNA miRNA MGP_C3HHeJ_T0012948.1 MGP_C3HHeJ_G0011052.1 mouse_genomes_project 15 72661285 72665624 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042392.1 MGP_C3HHeJ_G0022117.1 mouse_genomes_project 15 102871039 102880195 - MGP_C3HHeJ_P0042392 Krt71 protein_coding protein_coding MGP_C3HHeJ_T0041798.1 MGP_C3HHeJ_G0021931.1 mouse_genomes_project 15 85891262 85898326 - MGP_C3HHeJ_P0041798 Pkdrej protein_coding protein_coding MGP_C3HHeJ_T0041740.1 MGP_C3HHeJ_G0021909.1 mouse_genomes_project 15 84139405 84166284 + MGP_C3HHeJ_P0041740 Pnpla3 protein_coding protein_coding MGP_C3HHeJ_T0009993.1 MGP_C3HHeJ_G0008126.1 mouse_genomes_project 15 83461401 83461478 + Gm24575 miRNA miRNA MGP_C3HHeJ_T0041664.1 MGP_C3HHeJ_G0021890.1 mouse_genomes_project 15 82709222 82822230 - MGP_C3HHeJ_P0041664 Tcf20 protein_coding protein_coding MGP_C3HHeJ_T0041665.1 MGP_C3HHeJ_G0021890.1 mouse_genomes_project 15 82709222 82822230 - MGP_C3HHeJ_P0041665 Tcf20 protein_coding protein_coding MGP_C3HHeJ_T0041606.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81734794 81744619 - MGP_C3HHeJ_P0041606 Pmm1 protein_coding protein_coding MGP_C3HHeJ_T0041607.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81734794 81744558 - MGP_C3HHeJ_P0041607 Pmm1 protein_coding protein_coding MGP_C3HHeJ_T0041608.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81735088 81737195 - Pmm1 protein_coding retained_intron MGP_C3HHeJ_T0041609.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81735130 81744531 - MGP_C3HHeJ_P0041609 Pmm1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041610.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81735233 81735955 - Pmm1 protein_coding retained_intron MGP_C3HHeJ_T0041611.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81739240 81744522 - Pmm1 protein_coding retained_intron MGP_C3HHeJ_T0041612.1 MGP_C3HHeJ_G0021865.1 mouse_genomes_project 15 81741023 81744453 - Pmm1 protein_coding retained_intron MGP_C3HHeJ_T0042304.1 MGP_C3HHeJ_G0022087.1 mouse_genomes_project 15 101429459 101434789 + MGP_C3HHeJ_P0042304 Gm5475 protein_coding protein_coding MGP_C3HHeJ_T0042305.1 MGP_C3HHeJ_G0022087.1 mouse_genomes_project 15 101430505 101435464 + MGP_C3HHeJ_P0042305 Gm5475 protein_coding protein_coding MGP_C3HHeJ_T0017246.1 MGP_C3HHeJ_G0015064.1 mouse_genomes_project 15 77250875 77288397 - processed_transcript antisense MGP_C3HHeJ_T0017247.1 MGP_C3HHeJ_G0015064.1 mouse_genomes_project 15 77282111 77288364 - processed_transcript retained_intron MGP_C3HHeJ_T0042319.1 MGP_C3HHeJ_G0022092.1 mouse_genomes_project 15 101645876 101650970 + MGP_C3HHeJ_P0042319 Dazap2 protein_coding protein_coding MGP_C3HHeJ_T0042048.1 MGP_C3HHeJ_G0022003.1 mouse_genomes_project 15 96904207 96975040 + MGP_C3HHeJ_P0042048 Arid2 protein_coding protein_coding MGP_C3HHeJ_T0042049.1 MGP_C3HHeJ_G0022003.1 mouse_genomes_project 15 96904262 97031167 + MGP_C3HHeJ_P0042049 Arid2 protein_coding protein_coding MGP_C3HHeJ_T0042050.1 MGP_C3HHeJ_G0022003.1 mouse_genomes_project 15 96979841 96982816 + Arid2 protein_coding retained_intron MGP_C3HHeJ_T0042051.1 MGP_C3HHeJ_G0022003.1 mouse_genomes_project 15 96995813 97029776 + Arid2 protein_coding retained_intron MGP_C3HHeJ_T0040844.1 MGP_C3HHeJ_G0021656.1 mouse_genomes_project 15 71623650 72121147 - MGP_C3HHeJ_P0040844 Trappc9 protein_coding protein_coding MGP_C3HHeJ_T0040845.1 MGP_C3HHeJ_G0021656.1 mouse_genomes_project 15 71623650 72115756 - MGP_C3HHeJ_P0040845 Trappc9 protein_coding protein_coding MGP_C3HHeJ_T0040846.1 MGP_C3HHeJ_G0021656.1 mouse_genomes_project 15 71837743 72121147 - MGP_C3HHeJ_P0040846 Trappc9 protein_coding protein_coding MGP_C3HHeJ_T0040847.1 MGP_C3HHeJ_G0021656.1 mouse_genomes_project 15 71893112 72121147 - MGP_C3HHeJ_P0040847 Trappc9 protein_coding protein_coding MGP_C3HHeJ_T0003535.1 MGP_C3HHeJ_G0003207.1 mouse_genomes_project 15 65829384 65830885 + Gm17035 antisense antisense MGP_C3HHeJ_T0041614.1 MGP_C3HHeJ_G0021867.1 mouse_genomes_project 15 81776936 81801436 - MGP_C3HHeJ_P0041614 Desi1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041615.1 MGP_C3HHeJ_G0021867.1 mouse_genomes_project 15 81776936 81801446 - MGP_C3HHeJ_P0041615 Desi1 protein_coding protein_coding MGP_C3HHeJ_T0041616.1 MGP_C3HHeJ_G0021867.1 mouse_genomes_project 15 81778260 81801508 - MGP_C3HHeJ_P0041616 Desi1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041617.1 MGP_C3HHeJ_G0021867.1 mouse_genomes_project 15 81779058 81818821 - Desi1 protein_coding processed_transcript MGP_C3HHeJ_T0041618.1 MGP_C3HHeJ_G0021867.1 mouse_genomes_project 15 81779071 81801294 - MGP_C3HHeJ_P0041618 Desi1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041619.1 MGP_C3HHeJ_G0021867.1 mouse_genomes_project 15 81779134 81801320 - MGP_C3HHeJ_P0041619 Desi1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041553.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81347222 81350219 + Ep300 protein_coding processed_transcript MGP_C3HHeJ_T0041554.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81347268 81417176 + MGP_C3HHeJ_P0041554 Ep300 protein_coding protein_coding MGP_C3HHeJ_T0041555.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81348091 81388146 + Ep300 protein_coding retained_intron MGP_C3HHeJ_T0041556.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81377229 81387446 + MGP_C3HHeJ_P0041556 Ep300 protein_coding protein_coding MGP_C3HHeJ_T0041557.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81377247 81380462 + Ep300 protein_coding retained_intron MGP_C3HHeJ_T0041558.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81384989 81390381 + MGP_C3HHeJ_P0041558 Ep300 protein_coding protein_coding MGP_C3HHeJ_T0041559.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81390307 81391791 + MGP_C3HHeJ_P0041559 Ep300 protein_coding protein_coding MGP_C3HHeJ_T0041560.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81397885 81404468 + Ep300 protein_coding retained_intron MGP_C3HHeJ_T0041561.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81400054 81409710 + Ep300 protein_coding retained_intron MGP_C3HHeJ_T0041562.1 MGP_C3HHeJ_G0021853.1 mouse_genomes_project 15 81409954 81414287 + Ep300 protein_coding retained_intron MGP_C3HHeJ_T0041880.1 MGP_C3HHeJ_G0021954.1 mouse_genomes_project 15 89407735 89418578 - MGP_C3HHeJ_P0041880 Mapk12 protein_coding protein_coding MGP_C3HHeJ_T0041326.1 MGP_C3HHeJ_G0021796.1 mouse_genomes_project 15 78567628 78576404 + MGP_C3HHeJ_P0041326 Nol12 protein_coding protein_coding MGP_C3HHeJ_T0041327.1 MGP_C3HHeJ_G0021796.1 mouse_genomes_project 15 78567646 78573683 + MGP_C3HHeJ_P0041327 Nol12 protein_coding protein_coding MGP_C3HHeJ_T0041328.1 MGP_C3HHeJ_G0021796.1 mouse_genomes_project 15 78567690 78573615 + MGP_C3HHeJ_P0041328 Nol12 protein_coding protein_coding MGP_C3HHeJ_T0041329.1 MGP_C3HHeJ_G0021796.1 mouse_genomes_project 15 78567881 78570581 + MGP_C3HHeJ_P0041329 Nol12 protein_coding protein_coding MGP_C3HHeJ_T0041330.1 MGP_C3HHeJ_G0021796.1 mouse_genomes_project 15 78567903 78569279 + MGP_C3HHeJ_P0041330 Nol12 protein_coding protein_coding MGP_C3HHeJ_T0003528.1 MGP_C3HHeJ_G0003200.1 mouse_genomes_project 15 37773240 37788424 + Gm16291 antisense antisense MGP_C3HHeJ_T0040776.1 MGP_C3HHeJ_G0021638.1 mouse_genomes_project 15 63859047 63893781 - MGP_C3HHeJ_P0040776 Gm21961 protein_coding protein_coding MGP_C3HHeJ_T0042183.1 MGP_C3HHeJ_G0022048.1 mouse_genomes_project 15 99693993 99697621 - MGP_C3HHeJ_P0042183 Rhebl1 protein_coding protein_coding MGP_C3HHeJ_T0042184.1 MGP_C3HHeJ_G0022048.1 mouse_genomes_project 15 99694261 99697307 - Rhebl1 protein_coding processed_transcript MGP_C3HHeJ_T0042185.1 MGP_C3HHeJ_G0022048.1 mouse_genomes_project 15 99695748 99696963 - Rhebl1 protein_coding retained_intron MGP_C3HHeJ_T0042384.1 MGP_C3HHeJ_G0022109.1 mouse_genomes_project 15 102541819 102549278 - MGP_C3HHeJ_P0042384 Krt81 protein_coding protein_coding MGP_C3HHeJ_T0042540.1 MGP_C3HHeJ_G0022168.1 mouse_genomes_project 15 104488906 104497626 + MGP_C3HHeJ_P0042540 Hnrnpa1 protein_coding protein_coding MGP_C3HHeJ_T0042541.1 MGP_C3HHeJ_G0022168.1 mouse_genomes_project 15 104488988 104492723 + MGP_C3HHeJ_P0042541 Hnrnpa1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100271.1 MGP_C3HHeJ_G0038465.1 mouse_genomes_project 15 84312819 84312963 - Gm22890 snoRNA snoRNA MGP_C3HHeJ_T0003549.1 MGP_C3HHeJ_G0003216.1 mouse_genomes_project 15 82806718 82815909 + Gm20324 antisense antisense MGP_C3HHeJ_T0009958.1 MGP_C3HHeJ_G0008091.1 mouse_genomes_project 15 44606568 44606630 - Gm23562 miRNA miRNA MGP_C3HHeJ_T0009960.1 MGP_C3HHeJ_G0008093.1 mouse_genomes_project 15 52070051 52070126 - Mir28c miRNA miRNA MGP_C3HHeJ_T0098048.1 MGP_C3HHeJ_G0036260.1 mouse_genomes_project 15 28369991 28370110 + Gm23956 rRNA rRNA MGP_C3HHeJ_T0040902.1 MGP_C3HHeJ_G0021672.1 mouse_genomes_project 15 73841849 73845566 - MGP_C3HHeJ_P0040902 Slurp1 protein_coding protein_coding MGP_C3HHeJ_T0040903.1 MGP_C3HHeJ_G0021672.1 mouse_genomes_project 15 73844195 73845546 - MGP_C3HHeJ_P0040903 Slurp1 protein_coding protein_coding MGP_C3HHeJ_T0017251.1 MGP_C3HHeJ_G0015068.1 mouse_genomes_project 15 80920480 80922473 + 4930483J18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017252.1 MGP_C3HHeJ_G0015068.1 mouse_genomes_project 15 80920559 80922466 + 4930483J18Rik processed_transcript processed_transcript MGP_C3HHeJ_T0040737.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60690554 60696257 + MGP_C3HHeJ_P0040737 Myc protein_coding protein_coding MGP_C3HHeJ_T0040738.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60691310 60696255 + MGP_C3HHeJ_P0040738 Myc protein_coding protein_coding MGP_C3HHeJ_T0040739.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60691483 60696279 + MGP_C3HHeJ_P0040739 Myc protein_coding protein_coding MGP_C3HHeJ_T0040740.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60691541 60695972 + MGP_C3HHeJ_P0040740 Myc protein_coding protein_coding MGP_C3HHeJ_T0040741.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60691841 60695813 + MGP_C3HHeJ_P0040741 Myc protein_coding protein_coding MGP_C3HHeJ_T0040742.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60692953 60693531 + MGP_C3HHeJ_P0040742 Myc protein_coding protein_coding MGP_C3HHeJ_T0040743.1 MGP_C3HHeJ_G0021630.1 mouse_genomes_project 15 60693335 60696158 + MGP_C3HHeJ_P0040743 Myc protein_coding protein_coding MGP_C3HHeJ_T0041351.1 MGP_C3HHeJ_G0021801.1 mouse_genomes_project 15 78715873 78735737 + MGP_C3HHeJ_P0041351 Eif3l protein_coding protein_coding MGP_C3HHeJ_T0010009.1 MGP_C3HHeJ_G0008142.1 mouse_genomes_project 15 102446428 102446511 + Mir1941 miRNA miRNA MGP_C3HHeJ_T0042295.1 MGP_C3HHeJ_G0022085.1 mouse_genomes_project 15 101295331 101303389 + MGP_C3HHeJ_P0042295 protein_coding protein_coding MGP_C3HHeJ_T0003572.1 MGP_C3HHeJ_G0003235.1 mouse_genomes_project 15 102200864 102202570 - Gm16031 antisense antisense MGP_C3HHeJ_T0099012.1 MGP_C3HHeJ_G0037206.1 mouse_genomes_project 15 93820965 93821069 + Gm26371 snRNA snRNA MGP_C3HHeJ_T0011295.1 MGP_C3HHeJ_G0009428.1 mouse_genomes_project 15 60824777 60824863 + Gm27718 misc_RNA misc_RNA MGP_C3HHeJ_T0006706.1 MGP_C3HHeJ_G0005527.1 mouse_genomes_project 15 83291480 83304000 - 1700001L05Rik lincRNA lincRNA MGP_C3HHeJ_T0006707.1 MGP_C3HHeJ_G0005527.1 mouse_genomes_project 15 83291488 83303729 - 1700001L05Rik lincRNA lincRNA MGP_C3HHeJ_T0006708.1 MGP_C3HHeJ_G0005527.1 mouse_genomes_project 15 83291514 83303995 - 1700001L05Rik lincRNA lincRNA MGP_C3HHeJ_T0006709.1 MGP_C3HHeJ_G0005527.1 mouse_genomes_project 15 83292572 83301860 - 1700001L05Rik lincRNA lincRNA MGP_C3HHeJ_T0040377.1 MGP_C3HHeJ_G0021489.1 mouse_genomes_project 15 20081026 20940085 + MGP_C3HHeJ_P0040377 Cdh18 protein_coding protein_coding MGP_C3HHeJ_T0040378.1 MGP_C3HHeJ_G0021489.1 mouse_genomes_project 15 20570067 20714921 + Cdh18 protein_coding retained_intron MGP_C3HHeJ_T0040379.1 MGP_C3HHeJ_G0021489.1 mouse_genomes_project 15 20570075 20988524 + Cdh18 protein_coding retained_intron MGP_C3HHeJ_T0040380.1 MGP_C3HHeJ_G0021489.1 mouse_genomes_project 15 20570075 21018432 + MGP_C3HHeJ_P0040380 Cdh18 protein_coding protein_coding MGP_C3HHeJ_T0040381.1 MGP_C3HHeJ_G0021489.1 mouse_genomes_project 15 20713481 21018079 + MGP_C3HHeJ_P0040381 Cdh18 protein_coding protein_coding MGP_C3HHeJ_T0040382.1 MGP_C3HHeJ_G0021489.1 mouse_genomes_project 15 20713643 21018043 + MGP_C3HHeJ_P0040382 Cdh18 protein_coding protein_coding MGP_C3HHeJ_T0041783.1 MGP_C3HHeJ_G0021927.1 mouse_genomes_project 15 85550470 85561586 - MGP_C3HHeJ_P0041783 7530416G11Rik protein_coding protein_coding MGP_C3HHeJ_T0042527.1 MGP_C3HHeJ_G0022163.1 mouse_genomes_project 15 104216976 104220177 + MGP_C3HHeJ_P0042527 Hoxc8 protein_coding protein_coding MGP_C3HHeJ_T0042528.1 MGP_C3HHeJ_G0022163.1 mouse_genomes_project 15 104218258 104220467 + Hoxc8 protein_coding retained_intron MGP_C3HHeJ_T0042555.1 MGP_C3HHeJ_G0022173.1 mouse_genomes_project 15 104603519 104630448 - MGP_C3HHeJ_P0042555 Itga5 protein_coding protein_coding MGP_C3HHeJ_T0042482.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707004 103713298 + MGP_C3HHeJ_P0042482 Tarbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042483.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707058 103709793 + Tarbp2 protein_coding retained_intron MGP_C3HHeJ_T0042484.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707169 103713226 + MGP_C3HHeJ_P0042484 Tarbp2 protein_coding protein_coding MGP_C3HHeJ_T0042485.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707239 103713300 + Tarbp2 protein_coding retained_intron MGP_C3HHeJ_T0042486.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707267 103710562 + MGP_C3HHeJ_P0042486 Tarbp2 protein_coding protein_coding MGP_C3HHeJ_T0042487.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707271 103713300 + MGP_C3HHeJ_P0042487 Tarbp2 protein_coding protein_coding MGP_C3HHeJ_T0042488.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707310 103708533 + Tarbp2 protein_coding retained_intron MGP_C3HHeJ_T0042489.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707359 103713228 + MGP_C3HHeJ_P0042489 Tarbp2 protein_coding protein_coding MGP_C3HHeJ_T0042490.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707369 103712843 + Tarbp2 protein_coding processed_transcript MGP_C3HHeJ_T0042491.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707380 103711152 + Tarbp2 protein_coding retained_intron MGP_C3HHeJ_T0042492.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707538 103711364 + MGP_C3HHeJ_P0042492 Tarbp2 protein_coding protein_coding MGP_C3HHeJ_T0042493.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707611 103710893 + MGP_C3HHeJ_P0042493 Tarbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042494.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103707614 103712526 + MGP_C3HHeJ_P0042494 Tarbp2 protein_coding protein_coding MGP_C3HHeJ_T0042495.1 MGP_C3HHeJ_G0022151.1 mouse_genomes_project 15 103709852 103711253 + Tarbp2 protein_coding retained_intron MGP_C3HHeJ_T0000905.1 MGP_C3HHeJ_G0000845.1 mouse_genomes_project 15 17640184 17650202 - TEC TEC MGP_C3HHeJ_T0012960.1 MGP_C3HHeJ_G0011064.1 mouse_genomes_project 15 84157811 84158108 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040587.1 MGP_C3HHeJ_G0021565.1 mouse_genomes_project 15 41108750 41258787 - MGP_C3HHeJ_P0040587 Rspo2 protein_coding protein_coding MGP_C3HHeJ_T0003539.1 MGP_C3HHeJ_G0003210.1 mouse_genomes_project 15 73903009 73920038 + Gm17189 antisense antisense MGP_C3HHeJ_T0042394.1 MGP_C3HHeJ_G0022119.1 mouse_genomes_project 15 102913089 102923965 - MGP_C3HHeJ_P0042394 Krt72 protein_coding protein_coding MGP_C3HHeJ_T0042395.1 MGP_C3HHeJ_G0022119.1 mouse_genomes_project 15 102913250 102915601 - Krt72 protein_coding processed_transcript MGP_C3HHeJ_T0040699.1 MGP_C3HHeJ_G0021608.1 mouse_genomes_project 15 56608511 56638217 - MGP_C3HHeJ_P0040699 Zhx1 protein_coding protein_coding MGP_C3HHeJ_T0040700.1 MGP_C3HHeJ_G0021608.1 mouse_genomes_project 15 56608511 56638461 - MGP_C3HHeJ_P0040700 Zhx1 protein_coding protein_coding MGP_C3HHeJ_T0040701.1 MGP_C3HHeJ_G0021608.1 mouse_genomes_project 15 56608813 56638441 - MGP_C3HHeJ_P0040701 Zhx1 protein_coding protein_coding MGP_C3HHeJ_T0040704.1 MGP_C3HHeJ_G0021608.1 mouse_genomes_project 15 56614488 56638186 - MGP_C3HHeJ_P0040704 Zhx1 protein_coding protein_coding MGP_C3HHeJ_T0040705.1 MGP_C3HHeJ_G0021608.1 mouse_genomes_project 15 56616422 56638335 - Zhx1 protein_coding retained_intron MGP_C3HHeJ_T0040706.1 MGP_C3HHeJ_G0021608.1 mouse_genomes_project 15 56630631 56638513 - Zhx1 protein_coding retained_intron MGP_C3HHeJ_T0040718.1 MGP_C3HHeJ_G0021618.1 mouse_genomes_project 15 57480474 57484607 + MGP_C3HHeJ_P0040718 Trmt12 protein_coding protein_coding MGP_C3HHeJ_T0009963.1 MGP_C3HHeJ_G0008096.1 mouse_genomes_project 15 67251847 67251929 - Mir30d miRNA miRNA MGP_C3HHeJ_T0040401.1 MGP_C3HHeJ_G0021495.1 mouse_genomes_project 15 23645384 23659501 + MGP_C3HHeJ_P0040401 Zfp622 protein_coding protein_coding MGP_C3HHeJ_T0009995.1 MGP_C3HHeJ_G0008128.1 mouse_genomes_project 15 84973882 84973980 - Mir1249 miRNA miRNA MGP_C3HHeJ_T0040456.1 MGP_C3HHeJ_G0021520.1 mouse_genomes_project 15 32233512 32243245 - MGP_C3HHeJ_P0040456 9430069I07Rik protein_coding protein_coding MGP_C3HHeJ_T0003557.1 MGP_C3HHeJ_G0003222.1 mouse_genomes_project 15 98466356 98468518 + Rapgef3os2 antisense antisense MGP_C3HHeJ_T0042125.1 MGP_C3HHeJ_G0022024.1 mouse_genomes_project 15 98920399 98921762 - protein_coding processed_transcript MGP_C3HHeJ_T0099000.1 MGP_C3HHeJ_G0037194.1 mouse_genomes_project 15 75540043 75540148 - Gm25720 snRNA snRNA MGP_C3HHeJ_T0040293.1 MGP_C3HHeJ_G0021462.1 mouse_genomes_project 15 7374892 7423305 + MGP_C3HHeJ_P0040293 Gm21973 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011302.1 MGP_C3HHeJ_G0009435.1 mouse_genomes_project 15 100020058 100020146 - Gm25057 misc_RNA misc_RNA MGP_C3HHeJ_T0100238.1 MGP_C3HHeJ_G0038432.1 mouse_genomes_project 15 20694952 20695084 + Gm24656 snoRNA snoRNA MGP_C3HHeJ_T0017248.1 MGP_C3HHeJ_G0015065.1 mouse_genomes_project 15 77706875 77731247 + A730060N03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0042320.1 MGP_C3HHeJ_G0022093.1 mouse_genomes_project 15 101651580 101667203 - MGP_C3HHeJ_P0042320 Smagp protein_coding protein_coding MGP_C3HHeJ_T0042321.1 MGP_C3HHeJ_G0022093.1 mouse_genomes_project 15 101651580 101667193 - MGP_C3HHeJ_P0042321 Smagp protein_coding protein_coding MGP_C3HHeJ_T0041030.1 MGP_C3HHeJ_G0021714.1 mouse_genomes_project 15 75412572 75416990 - MGP_C3HHeJ_P0041030 protein_coding protein_coding MGP_C3HHeJ_T0100262.1 MGP_C3HHeJ_G0038456.1 mouse_genomes_project 15 60029070 60029204 - Gm24696 snoRNA snoRNA MGP_C3HHeJ_T0041400.1 MGP_C3HHeJ_G0021811.1 mouse_genomes_project 15 79019612 79037556 - MGP_C3HHeJ_P0041400 Tmem184b protein_coding unknown_likely_coding MGP_C3HHeJ_T0041401.1 MGP_C3HHeJ_G0021811.1 mouse_genomes_project 15 79019617 79063588 - MGP_C3HHeJ_P0041401 Tmem184b protein_coding protein_coding MGP_C3HHeJ_T0041402.1 MGP_C3HHeJ_G0021811.1 mouse_genomes_project 15 79019617 79063204 - MGP_C3HHeJ_P0041402 Tmem184b protein_coding protein_coding MGP_C3HHeJ_T0041061.1 MGP_C3HHeJ_G0021718.1 mouse_genomes_project 15 75574149 75577247 + MGP_C3HHeJ_P0041061 Grina protein_coding protein_coding MGP_C3HHeJ_T0009949.1 MGP_C3HHeJ_G0008082.1 mouse_genomes_project 15 33615273 33615361 - Mir599 miRNA miRNA MGP_C3HHeJ_T0040178.1 MGP_C3HHeJ_G0021433.1 mouse_genomes_project 15 2006794 2019295 - MGP_C3HHeJ_P0040178 Card6 protein_coding protein_coding MGP_C3HHeJ_T0040179.1 MGP_C3HHeJ_G0021433.1 mouse_genomes_project 15 2016078 2019240 - MGP_C3HHeJ_P0040179 Card6 protein_coding protein_coding MGP_C3HHeJ_T0041380.1 MGP_C3HHeJ_G0021807.1 mouse_genomes_project 15 78892752 78896510 - MGP_C3HHeJ_P0041380 Slc16a8 protein_coding protein_coding MGP_C3HHeJ_T0041656.1 MGP_C3HHeJ_G0021882.1 mouse_genomes_project 15 82168448 82173949 - MGP_C3HHeJ_P0041656 Ndufa6 protein_coding protein_coding MGP_C3HHeJ_T0040498.1 MGP_C3HHeJ_G0021536.1 mouse_genomes_project 15 34462004 34481126 - MGP_C3HHeJ_P0040498 Ankrd46 protein_coding protein_coding MGP_C3HHeJ_T0009984.1 MGP_C3HHeJ_G0008117.1 mouse_genomes_project 15 82227437 82227497 - Gm27331 miRNA miRNA MGP_C3HHeJ_T0098972.1 MGP_C3HHeJ_G0037166.1 mouse_genomes_project 15 18575678 18575785 + Gm25101 snRNA snRNA MGP_C3HHeJ_T0041720.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83734372 83747022 + MGP_C3HHeJ_P0041720 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0041721.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83743790 83816090 + MGP_C3HHeJ_P0041721 Mpped1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041722.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83746829 83813910 + MGP_C3HHeJ_P0041722 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0041723.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83746904 83814006 + MGP_C3HHeJ_P0041723 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0041724.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83746925 83816084 + MGP_C3HHeJ_P0041724 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0041725.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83751423 83809673 + MGP_C3HHeJ_P0041725 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0041726.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83754883 83813891 + MGP_C3HHeJ_P0041726 Mpped1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041727.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83792378 83813911 + MGP_C3HHeJ_P0041727 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0041728.1 MGP_C3HHeJ_G0021905.1 mouse_genomes_project 15 83792411 83812119 + MGP_C3HHeJ_P0041728 Mpped1 protein_coding protein_coding MGP_C3HHeJ_T0006674.1 MGP_C3HHeJ_G0005508.1 mouse_genomes_project 15 38481994 38497959 - Gm16294 lincRNA lincRNA MGP_C3HHeJ_T0041945.1 MGP_C3HHeJ_G0021971.1 mouse_genomes_project 15 89740693 89741973 + MGP_C3HHeJ_P0041945 C730034F03Rik protein_coding protein_coding MGP_C3HHeJ_T0040874.1 MGP_C3HHeJ_G0021664.1 mouse_genomes_project 15 72850784 72921379 - MGP_C3HHeJ_P0040874 Mroh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040875.1 MGP_C3HHeJ_G0021664.1 mouse_genomes_project 15 72870315 72873007 - Mroh5 protein_coding processed_transcript MGP_C3HHeJ_T0040876.1 MGP_C3HHeJ_G0021664.1 mouse_genomes_project 15 72876445 72934475 - MGP_C3HHeJ_P0040876 Mroh5 protein_coding protein_coding MGP_C3HHeJ_T0040877.1 MGP_C3HHeJ_G0021664.1 mouse_genomes_project 15 72876969 72909746 - MGP_C3HHeJ_P0040877 Mroh5 protein_coding protein_coding MGP_C3HHeJ_T0040878.1 MGP_C3HHeJ_G0021664.1 mouse_genomes_project 15 72886747 72934503 - Mroh5 protein_coding retained_intron MGP_C3HHeJ_T0042390.1 MGP_C3HHeJ_G0022115.1 mouse_genomes_project 15 102821091 102828873 - MGP_C3HHeJ_P0042390 Krt6a protein_coding protein_coding MGP_C3HHeJ_T0040413.1 MGP_C3HHeJ_G0021503.1 mouse_genomes_project 15 27950965 28815073 + MGP_C3HHeJ_P0040413 Ctnnd2 protein_coding protein_coding MGP_C3HHeJ_T0041148.1 MGP_C3HHeJ_G0021737.1 mouse_genomes_project 15 75876972 75880160 + MGP_C3HHeJ_P0041148 Slc52a2 protein_coding protein_coding MGP_C3HHeJ_T0041862.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89373987 89399147 - MGP_C3HHeJ_P0041862 Tubgcp6 protein_coding protein_coding MGP_C3HHeJ_T0041863.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89374728 89376729 - Tubgcp6 protein_coding retained_intron MGP_C3HHeJ_T0041864.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89376040 89398946 - MGP_C3HHeJ_P0041864 Tubgcp6 protein_coding protein_coding MGP_C3HHeJ_T0041865.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89376040 89378234 - MGP_C3HHeJ_P0041865 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041866.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89376064 89377174 - Tubgcp6 protein_coding retained_intron MGP_C3HHeJ_T0041867.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89376323 89376910 - Tubgcp6 protein_coding retained_intron MGP_C3HHeJ_T0041868.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89376347 89377645 - MGP_C3HHeJ_P0041868 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041869.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89376642 89377811 - Tubgcp6 protein_coding retained_intron MGP_C3HHeJ_T0041870.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89377106 89378003 - MGP_C3HHeJ_P0041870 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041871.1 MGP_C3HHeJ_G0021952.1 mouse_genomes_project 15 89379846 89383060 - MGP_C3HHeJ_P0041871 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041423.1 MGP_C3HHeJ_G0021819.1 mouse_genomes_project 15 79349730 79352830 + MGP_C3HHeJ_P0041423 Tomm22 protein_coding protein_coding MGP_C3HHeJ_T0041424.1 MGP_C3HHeJ_G0021819.1 mouse_genomes_project 15 79349960 79352637 + Tomm22 protein_coding processed_transcript MGP_C3HHeJ_T0042290.1 MGP_C3HHeJ_G0022081.1 mouse_genomes_project 15 101223081 101237665 + MGP_C3HHeJ_P0042290 Tmprss12 protein_coding protein_coding MGP_C3HHeJ_T0040854.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72590371 72651752 + MGP_C3HHeJ_P0040854 Dennd3 protein_coding protein_coding MGP_C3HHeJ_T0040855.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72590483 72651609 + MGP_C3HHeJ_P0040855 Dennd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040856.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72597627 72602559 + Dennd3 protein_coding processed_transcript MGP_C3HHeJ_T0040857.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72601355 72650464 + MGP_C3HHeJ_P0040857 Dennd3 protein_coding protein_coding MGP_C3HHeJ_T0040858.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72636701 72647619 + MGP_C3HHeJ_P0040858 Dennd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040859.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72644373 72646589 + Dennd3 protein_coding retained_intron MGP_C3HHeJ_T0040860.1 MGP_C3HHeJ_G0021660.1 mouse_genomes_project 15 72646589 72650409 + Dennd3 protein_coding retained_intron MGP_C3HHeJ_T0098987.1 MGP_C3HHeJ_G0037181.1 mouse_genomes_project 15 51834003 51834069 + Gm27926 snRNA snRNA MGP_C3HHeJ_T0100252.1 MGP_C3HHeJ_G0038446.1 mouse_genomes_project 15 39995489 39995591 + Gm24751 snoRNA snoRNA MGP_C3HHeJ_T0100246.1 MGP_C3HHeJ_G0038440.1 mouse_genomes_project 15 32005334 32005458 - Gm24500 snoRNA snoRNA MGP_C3HHeJ_T0041274.1 MGP_C3HHeJ_G0021776.1 mouse_genomes_project 15 77778108 77791254 - MGP_C3HHeJ_P0041274 Pvalb protein_coding protein_coding MGP_C3HHeJ_T0041275.1 MGP_C3HHeJ_G0021776.1 mouse_genomes_project 15 77778111 77793417 - MGP_C3HHeJ_P0041275 Pvalb protein_coding protein_coding MGP_C3HHeJ_T0098979.1 MGP_C3HHeJ_G0037173.1 mouse_genomes_project 15 35654441 35654561 - Gm24833 snRNA snRNA MGP_C3HHeJ_T0100236.1 MGP_C3HHeJ_G0038430.1 mouse_genomes_project 15 17580343 17580473 + Gm25976 snoRNA snoRNA MGP_C3HHeJ_T0003558.1 MGP_C3HHeJ_G0003223.1 mouse_genomes_project 15 98801982 98804471 + Gm26513 antisense antisense MGP_C3HHeJ_T0017215.1 MGP_C3HHeJ_G0015051.1 mouse_genomes_project 15 910547 914926 - BC037032 processed_transcript TEC MGP_C3HHeJ_T0017216.1 MGP_C3HHeJ_G0015051.1 mouse_genomes_project 15 912119 917827 - BC037032 processed_transcript antisense MGP_C3HHeJ_T0017217.1 MGP_C3HHeJ_G0015051.1 mouse_genomes_project 15 912804 917836 - BC037032 processed_transcript antisense MGP_C3HHeJ_T0017218.1 MGP_C3HHeJ_G0015051.1 mouse_genomes_project 15 913408 917839 - BC037032 processed_transcript antisense MGP_C3HHeJ_T0017219.1 MGP_C3HHeJ_G0015051.1 mouse_genomes_project 15 914004 916510 - BC037032 processed_transcript antisense MGP_C3HHeJ_T0017220.1 MGP_C3HHeJ_G0015051.1 mouse_genomes_project 15 916830 917586 - BC037032 processed_transcript antisense MGP_C3HHeJ_T0098050.1 MGP_C3HHeJ_G0036262.1 mouse_genomes_project 15 37124727 37124835 - n-R5s39 rRNA rRNA MGP_C3HHeJ_T0041738.1 MGP_C3HHeJ_G0021907.1 mouse_genomes_project 15 84041377 84073981 - MGP_C3HHeJ_P0041738 Sult4a1 protein_coding protein_coding MGP_C3HHeJ_T0042141.1 MGP_C3HHeJ_G0022031.1 mouse_genomes_project 15 99215285 99216343 + MGP_C3HHeJ_P0042141 Olfr281 protein_coding protein_coding MGP_C3HHeJ_T0041825.1 MGP_C3HHeJ_G0021941.1 mouse_genomes_project 15 88930640 88981622 - MGP_C3HHeJ_P0041825 Brd1 protein_coding protein_coding MGP_C3HHeJ_T0041826.1 MGP_C3HHeJ_G0021941.1 mouse_genomes_project 15 88931636 88978161 - MGP_C3HHeJ_P0041826 Brd1 protein_coding protein_coding MGP_C3HHeJ_T0041827.1 MGP_C3HHeJ_G0021941.1 mouse_genomes_project 15 88939346 88944167 - Brd1 protein_coding processed_transcript MGP_C3HHeJ_T0041828.1 MGP_C3HHeJ_G0021941.1 mouse_genomes_project 15 88942153 88981619 - MGP_C3HHeJ_P0041828 Brd1 protein_coding protein_coding MGP_C3HHeJ_T0041829.1 MGP_C3HHeJ_G0021941.1 mouse_genomes_project 15 88957002 88963259 - Brd1 protein_coding processed_transcript MGP_C3HHeJ_T0041830.1 MGP_C3HHeJ_G0021941.1 mouse_genomes_project 15 88957535 88961144 - Brd1 protein_coding processed_transcript MGP_C3HHeJ_T0042406.1 MGP_C3HHeJ_G0022129.1 mouse_genomes_project 15 103182345 103186152 + MGP_C3HHeJ_P0042406 Krt18 protein_coding protein_coding MGP_C3HHeJ_T0101141.1 MGP_C3HHeJ_G0039304.1 mouse_genomes_project 15 57927936 57936041 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101142.1 MGP_C3HHeJ_G0039304.1 mouse_genomes_project 15 57934880 57935958 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101763.1 MGP_C3HHeJ_G0039728.1 mouse_genomes_project 15 74603947 74608281 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0040620.1 MGP_C3HHeJ_G0021578.1 mouse_genomes_project 15 50214850 50299418 - MGP_C3HHeJ_P0040620 Eif3h protein_coding protein_coding MGP_C3HHeJ_T0041078.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75661421 75665098 + MGP_C3HHeJ_P0041078 Gpaa1 protein_coding protein_coding MGP_C3HHeJ_T0041079.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75661534 75665089 + MGP_C3HHeJ_P0041079 Gpaa1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041080.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75661535 75665094 + MGP_C3HHeJ_P0041080 Gpaa1 protein_coding protein_coding MGP_C3HHeJ_T0041081.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75661540 75663005 + Gpaa1 protein_coding retained_intron MGP_C3HHeJ_T0041082.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75661703 75662677 + MGP_C3HHeJ_P0041082 Gpaa1 protein_coding protein_coding MGP_C3HHeJ_T0041083.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75662189 75663112 + MGP_C3HHeJ_P0041083 Gpaa1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041084.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75662413 75663808 + Gpaa1 protein_coding retained_intron MGP_C3HHeJ_T0041085.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75662717 75663438 + MGP_C3HHeJ_P0041085 Gpaa1 protein_coding protein_coding MGP_C3HHeJ_T0041086.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75663359 75664484 + Gpaa1 protein_coding retained_intron MGP_C3HHeJ_T0041087.1 MGP_C3HHeJ_G0021723.1 mouse_genomes_project 15 75663921 75664489 + Gpaa1 protein_coding retained_intron MGP_C3HHeJ_T0041988.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92059749 92214568 + MGP_C3HHeJ_P0041988 Lrrk2 protein_coding protein_coding MGP_C3HHeJ_T0041989.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92059855 92213453 + MGP_C3HHeJ_P0041989 Lrrk2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041990.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92128757 92179874 + Lrrk2 protein_coding processed_transcript MGP_C3HHeJ_T0041991.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92162344 92168490 + Lrrk2 protein_coding processed_transcript MGP_C3HHeJ_T0041992.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92170376 92214474 + Lrrk2 protein_coding processed_transcript MGP_C3HHeJ_T0041993.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92205926 92214474 + Lrrk2 protein_coding retained_intron MGP_C3HHeJ_T0041994.1 MGP_C3HHeJ_G0021984.1 mouse_genomes_project 15 92212304 92214567 + Lrrk2 protein_coding retained_intron MGP_C3HHeJ_T0006715.1 MGP_C3HHeJ_G0005533.1 mouse_genomes_project 15 96652858 96685179 - D030018L15Rik lincRNA lincRNA MGP_C3HHeJ_T0006716.1 MGP_C3HHeJ_G0005533.1 mouse_genomes_project 15 96652858 96683886 - D030018L15Rik lincRNA lincRNA MGP_C3HHeJ_T0006717.1 MGP_C3HHeJ_G0005533.1 mouse_genomes_project 15 96674165 96685305 - D030018L15Rik lincRNA lincRNA MGP_C3HHeJ_T0098993.1 MGP_C3HHeJ_G0037187.1 mouse_genomes_project 15 62873361 62873466 + Gm25628 snRNA snRNA MGP_C3HHeJ_T0041115.1 MGP_C3HHeJ_G0021729.1 mouse_genomes_project 15 75705752 75708733 - MGP_C3HHeJ_P0041115 Tssk5 protein_coding protein_coding MGP_C3HHeJ_T0010018.1 MGP_C3HHeJ_G0008151.1 mouse_genomes_project 15 104242212 104242304 + Mir615 miRNA miRNA MGP_C3HHeJ_T0042386.1 MGP_C3HHeJ_G0022111.1 mouse_genomes_project 15 102632530 102646901 - MGP_C3HHeJ_P0042386 Krt84 protein_coding protein_coding MGP_C3HHeJ_T0040408.1 MGP_C3HHeJ_G0021499.1 mouse_genomes_project 15 25324415 25349218 - MGP_C3HHeJ_P0040408 Otulin protein_coding protein_coding MGP_C3HHeJ_T0042186.1 MGP_C3HHeJ_G0022049.1 mouse_genomes_project 15 99709659 99715151 - MGP_C3HHeJ_P0042186 Dhh protein_coding protein_coding MGP_C3HHeJ_T0098971.1 MGP_C3HHeJ_G0037165.1 mouse_genomes_project 15 15409844 15409951 - Gm24713 snRNA snRNA MGP_C3HHeJ_T0040899.1 MGP_C3HHeJ_G0021669.1 mouse_genomes_project 15 73819817 73827052 - MGP_C3HHeJ_P0040899 Jrk protein_coding protein_coding MGP_C3HHeJ_T0040708.1 MGP_C3HHeJ_G0021610.1 mouse_genomes_project 15 56704275 56721449 + MGP_C3HHeJ_P0040708 Wdyhv1 protein_coding protein_coding MGP_C3HHeJ_T0041088.1 MGP_C3HHeJ_G0021724.1 mouse_genomes_project 15 75674800 75677249 + MGP_C3HHeJ_P0041088 Cyc1 protein_coding protein_coding MGP_C3HHeJ_T0003537.1 MGP_C3HHeJ_G0003209.1 mouse_genomes_project 15 73826677 73827889 + 4933427E11Rik antisense antisense MGP_C3HHeJ_T0003538.1 MGP_C3HHeJ_G0003209.1 mouse_genomes_project 15 73826677 73827891 + 4933427E11Rik antisense antisense MGP_C3HHeJ_T0003562.1 MGP_C3HHeJ_G0003227.1 mouse_genomes_project 15 100602507 100612445 - Gm16537 antisense antisense MGP_C3HHeJ_T0009943.1 MGP_C3HHeJ_G0008076.1 mouse_genomes_project 15 9994069 9994209 + miRNA miRNA MGP_C3HHeJ_T0040633.1 MGP_C3HHeJ_G0021585.1 mouse_genomes_project 15 51916286 52368302 - Samd12 protein_coding processed_transcript MGP_C3HHeJ_T0040634.1 MGP_C3HHeJ_G0021585.1 mouse_genomes_project 15 51916466 52368295 - MGP_C3HHeJ_P0040634 Samd12 protein_coding protein_coding MGP_C3HHeJ_T0040635.1 MGP_C3HHeJ_G0021585.1 mouse_genomes_project 15 51916859 52368146 - MGP_C3HHeJ_P0040635 Samd12 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040636.1 MGP_C3HHeJ_G0021585.1 mouse_genomes_project 15 52287153 52368302 - Samd12 protein_coding processed_transcript MGP_C3HHeJ_T0040713.1 MGP_C3HHeJ_G0021615.1 mouse_genomes_project 15 57097240 57247638 + MGP_C3HHeJ_P0040713 Fer1l6 protein_coding protein_coding MGP_C3HHeJ_T0040714.1 MGP_C3HHeJ_G0021615.1 mouse_genomes_project 15 57222039 57230729 + Fer1l6 protein_coding processed_transcript MGP_C3HHeJ_T0040715.1 MGP_C3HHeJ_G0021615.1 mouse_genomes_project 15 57232359 57249800 + Fer1l6 protein_coding retained_intron MGP_C3HHeJ_T0041911.1 MGP_C3HHeJ_G0021962.1 mouse_genomes_project 15 89653793 89658449 - MGP_C3HHeJ_P0041911 Lmf2 protein_coding protein_coding MGP_C3HHeJ_T0012915.1 MGP_C3HHeJ_G0011019.1 mouse_genomes_project 15 2128019 2129254 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041216.1 MGP_C3HHeJ_G0021752.1 mouse_genomes_project 15 76200623 76221962 - MGP_C3HHeJ_P0041216 Zfp251 protein_coding protein_coding MGP_C3HHeJ_T0040717.1 MGP_C3HHeJ_G0021617.1 mouse_genomes_project 15 57453138 57453871 - MGP_C3HHeJ_P0040717 Ube2d4 protein_coding protein_coding MGP_C3HHeJ_T0040913.1 MGP_C3HHeJ_G0021678.1 mouse_genomes_project 15 73916271 73919384 - MGP_C3HHeJ_P0040913 Ly6k protein_coding protein_coding MGP_C3HHeJ_T0040914.1 MGP_C3HHeJ_G0021678.1 mouse_genomes_project 15 73916271 73918931 - MGP_C3HHeJ_P0040914 Ly6k protein_coding protein_coding MGP_C3HHeJ_T0040904.1 MGP_C3HHeJ_G0021673.1 mouse_genomes_project 15 73850960 73853043 - MGP_C3HHeJ_P0040904 Lypd2 protein_coding protein_coding MGP_C3HHeJ_T0040905.1 MGP_C3HHeJ_G0021673.1 mouse_genomes_project 15 73851514 73853031 - Lypd2 protein_coding retained_intron MGP_C3HHeJ_T0098995.1 MGP_C3HHeJ_G0037189.1 mouse_genomes_project 15 67593952 67594059 + Gm25987 snRNA snRNA MGP_C3HHeJ_T0040852.1 MGP_C3HHeJ_G0021659.1 mouse_genomes_project 15 72265821 72497538 - MGP_C3HHeJ_P0040852 Ptk2 protein_coding protein_coding MGP_C3HHeJ_T0040853.1 MGP_C3HHeJ_G0021659.1 mouse_genomes_project 15 72271954 72428003 - MGP_C3HHeJ_P0040853 Ptk2 protein_coding protein_coding MGP_C3HHeJ_T0040920.1 MGP_C3HHeJ_G0021681.1 mouse_genomes_project 15 73967714 73977492 - MGP_C3HHeJ_P0040920 Cyp11b1 protein_coding protein_coding MGP_C3HHeJ_T0041366.1 MGP_C3HHeJ_G0021804.1 mouse_genomes_project 15 78782750 78792506 + MGP_C3HHeJ_P0041366 Polr2f protein_coding protein_coding MGP_C3HHeJ_T0041259.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77504418 77505072 - Txn2 protein_coding processed_transcript MGP_C3HHeJ_T0041260.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77504418 77517070 - MGP_C3HHeJ_P0041260 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0041261.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77504418 77518233 - MGP_C3HHeJ_P0041261 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0041262.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77504575 77516953 - MGP_C3HHeJ_P0041262 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0041263.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77504581 77518195 - MGP_C3HHeJ_P0041263 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0041264.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77508898 77516960 - MGP_C3HHeJ_P0041264 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0041265.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77512583 77518201 - MGP_C3HHeJ_P0041265 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0041266.1 MGP_C3HHeJ_G0021771.1 mouse_genomes_project 15 77515622 77518224 - MGP_C3HHeJ_P0041266 Txn2 protein_coding protein_coding MGP_C3HHeJ_T0006671.1 MGP_C3HHeJ_G0005505.1 mouse_genomes_project 15 36469711 36471031 + Gm26863 lincRNA lincRNA MGP_C3HHeJ_T0098989.1 MGP_C3HHeJ_G0037183.1 mouse_genomes_project 15 56706047 56706109 - Gm23475 snRNA snRNA MGP_C3HHeJ_T0009985.1 MGP_C3HHeJ_G0008118.1 mouse_genomes_project 15 82228801 82228887 + Gm25990 miRNA miRNA MGP_C3HHeJ_T0100256.1 MGP_C3HHeJ_G0038450.1 mouse_genomes_project 15 46011624 46011761 + Gm23530 snoRNA snoRNA MGP_C3HHeJ_T0041648.1 MGP_C3HHeJ_G0021881.1 mouse_genomes_project 15 82157264 82167371 + Smdt1 protein_coding processed_transcript MGP_C3HHeJ_T0041651.1 MGP_C3HHeJ_G0021881.1 mouse_genomes_project 15 82159287 82167319 + Smdt1 protein_coding processed_transcript MGP_C3HHeJ_T0041653.1 MGP_C3HHeJ_G0021881.1 mouse_genomes_project 15 82164260 82167402 + MGP_C3HHeJ_P0041653 Smdt1 protein_coding protein_coding MGP_C3HHeJ_T0041654.1 MGP_C3HHeJ_G0021881.1 mouse_genomes_project 15 82164320 82167403 + MGP_C3HHeJ_P0041654 Smdt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041655.1 MGP_C3HHeJ_G0021881.1 mouse_genomes_project 15 82165526 82167181 + MGP_C3HHeJ_P0041655 Smdt1 protein_coding protein_coding MGP_C3HHeJ_T0100242.1 MGP_C3HHeJ_G0038436.1 mouse_genomes_project 15 27770764 27770842 - Gm23327 snoRNA snoRNA MGP_C3HHeJ_T0041289.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78033038 78043020 + MGP_C3HHeJ_P0041289 Kctd17 protein_coding protein_coding MGP_C3HHeJ_T0041290.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78033038 78043020 + MGP_C3HHeJ_P0041290 Kctd17 protein_coding protein_coding MGP_C3HHeJ_T0041291.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78033102 78043432 + MGP_C3HHeJ_P0041291 Kctd17 protein_coding protein_coding MGP_C3HHeJ_T0041292.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78033136 78043366 + MGP_C3HHeJ_P0041292 Kctd17 protein_coding protein_coding MGP_C3HHeJ_T0041293.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78033165 78040383 + Kctd17 protein_coding retained_intron MGP_C3HHeJ_T0041294.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78033270 78043170 + MGP_C3HHeJ_P0041294 Kctd17 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041295.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78034608 78043103 + MGP_C3HHeJ_P0041295 Kctd17 protein_coding protein_coding MGP_C3HHeJ_T0041296.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78037509 78042257 + Kctd17 protein_coding retained_intron MGP_C3HHeJ_T0041297.1 MGP_C3HHeJ_G0021781.1 mouse_genomes_project 15 78038504 78042102 + Kctd17 protein_coding retained_intron MGP_C3HHeJ_T0040385.1 MGP_C3HHeJ_G0021492.1 mouse_genomes_project 15 23045553 23046206 + MGP_C3HHeJ_P0040385 Gm5468 protein_coding protein_coding MGP_C3HHeJ_T0040682.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56467047 56526895 + MGP_C3HHeJ_P0040682 Tbc1d31 protein_coding protein_coding MGP_C3HHeJ_T0040683.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56467082 56516236 + Tbc1d31 protein_coding processed_transcript MGP_C3HHeJ_T0040684.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56467087 56474797 + MGP_C3HHeJ_P0040684 Tbc1d31 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040685.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56467138 56526903 + MGP_C3HHeJ_P0040685 Tbc1d31 protein_coding unknown_likely_coding MGP_C3HHeJ_T0040686.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56467853 56516316 + Tbc1d31 protein_coding retained_intron MGP_C3HHeJ_T0040687.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56468703 56510906 + Tbc1d31 protein_coding retained_intron MGP_C3HHeJ_T0040688.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56470861 56512219 + Tbc1d31 protein_coding retained_intron MGP_C3HHeJ_T0040689.1 MGP_C3HHeJ_G0021604.1 mouse_genomes_project 15 56515246 56526901 + MGP_C3HHeJ_P0040689 Tbc1d31 protein_coding protein_coding MGP_C3HHeJ_T0009973.1 MGP_C3HHeJ_G0008106.1 mouse_genomes_project 15 78638162 78638224 + Mir6956 miRNA miRNA MGP_C3HHeJ_T0041307.1 MGP_C3HHeJ_G0021788.1 mouse_genomes_project 15 78282588 78333409 - MGP_C3HHeJ_P0041307 Elfn2 protein_coding protein_coding MGP_C3HHeJ_T0000906.1 MGP_C3HHeJ_G0000846.1 mouse_genomes_project 15 18640633 18641052 + TEC TEC MGP_C3HHeJ_T0012932.1 MGP_C3HHeJ_G0011036.1 mouse_genomes_project 15 35923691 35924094 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0041028.1 MGP_C3HHeJ_G0021713.1 mouse_genomes_project 15 75395676 75406439 - MGP_C3HHeJ_P0041028 Puf60 protein_coding protein_coding MGP_C3HHeJ_T0041029.1 MGP_C3HHeJ_G0021713.1 mouse_genomes_project 15 75395676 75406439 - MGP_C3HHeJ_P0041029 Puf60 protein_coding protein_coding MGP_C3HHeJ_T0041641.1 MGP_C3HHeJ_G0021876.1 mouse_genomes_project 15 82054053 82062754 + MGP_C3HHeJ_P0041641 1500009C09Rik protein_coding protein_coding MGP_C3HHeJ_T0041642.1 MGP_C3HHeJ_G0021876.1 mouse_genomes_project 15 82058038 82062769 + MGP_C3HHeJ_P0041642 1500009C09Rik protein_coding protein_coding MGP_C3HHeJ_T0041928.1 MGP_C3HHeJ_G0021967.1 mouse_genomes_project 15 89689557 89691598 + MGP_C3HHeJ_P0041928 Klhdc7b protein_coding protein_coding MGP_C3HHeJ_T0041234.1 MGP_C3HHeJ_G0021760.1 mouse_genomes_project 15 76437945 76669878 - MGP_C3HHeJ_P0041234 Rbfox2 protein_coding protein_coding MGP_C3HHeJ_T0041235.1 MGP_C3HHeJ_G0021760.1 mouse_genomes_project 15 76437946 76514125 - MGP_C3HHeJ_P0041235 Rbfox2 protein_coding protein_coding MGP_C3HHeJ_T0041236.1 MGP_C3HHeJ_G0021760.1 mouse_genomes_project 15 76437946 76669878 - MGP_C3HHeJ_P0041236 Rbfox2 protein_coding protein_coding MGP_C3HHeJ_T0041237.1 MGP_C3HHeJ_G0021760.1 mouse_genomes_project 15 76437946 76514125 - MGP_C3HHeJ_P0041237 Rbfox2 protein_coding protein_coding MGP_C3HHeJ_T0041572.1 MGP_C3HHeJ_G0021855.1 mouse_genomes_project 15 81444390 81460520 - MGP_C3HHeJ_P0041572 Chadl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041575.1 MGP_C3HHeJ_G0021855.1 mouse_genomes_project 15 81452258 81463779 - MGP_C3HHeJ_P0041575 Chadl protein_coding protein_coding MGP_C3HHeJ_T0041576.1 MGP_C3HHeJ_G0021855.1 mouse_genomes_project 15 81452274 81460699 - MGP_C3HHeJ_P0041576 Chadl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042360.1 MGP_C3HHeJ_G0022100.1 mouse_genomes_project 15 102186097 102190365 + MGP_C3HHeJ_P0042360 Ankrd33 protein_coding protein_coding MGP_C3HHeJ_T0042176.1 MGP_C3HHeJ_G0022045.1 mouse_genomes_project 15 99617660 99623001 - MGP_C3HHeJ_P0042176 Ddn protein_coding protein_coding MGP_C3HHeJ_T0040518.1 MGP_C3HHeJ_G0021541.1 mouse_genomes_project 15 35011545 35022368 - MGP_C3HHeJ_P0040518 Zfp706 protein_coding protein_coding MGP_C3HHeJ_T0011296.1 MGP_C3HHeJ_G0009429.1 mouse_genomes_project 15 60900012 60900139 + Gm27957 misc_RNA misc_RNA MGP_C3HHeJ_T0041758.1 MGP_C3HHeJ_G0021916.1 mouse_genomes_project 15 84741430 84788829 + MGP_C3HHeJ_P0041758 Arhgap8 protein_coding protein_coding MGP_C3HHeJ_T0041759.1 MGP_C3HHeJ_G0021916.1 mouse_genomes_project 15 84741430 84788829 + MGP_C3HHeJ_P0041759 Arhgap8 protein_coding protein_coding MGP_C3HHeJ_T0041760.1 MGP_C3HHeJ_G0021916.1 mouse_genomes_project 15 84741461 84775927 + Arhgap8 protein_coding retained_intron MGP_C3HHeJ_T0041761.1 MGP_C3HHeJ_G0021916.1 mouse_genomes_project 15 84755290 84788826 + MGP_C3HHeJ_P0041761 Arhgap8 protein_coding protein_coding MGP_C3HHeJ_T0041762.1 MGP_C3HHeJ_G0021916.1 mouse_genomes_project 15 84765409 84782825 + Arhgap8 protein_coding processed_transcript MGP_C3HHeJ_T0041763.1 MGP_C3HHeJ_G0021916.1 mouse_genomes_project 15 84786498 84788562 + Arhgap8 protein_coding retained_intron MGP_C3HHeJ_T0041635.1 MGP_C3HHeJ_G0021871.1 mouse_genomes_project 15 81920338 81934547 + MGP_C3HHeJ_P0041635 Ccdc134 protein_coding protein_coding MGP_C3HHeJ_T0042007.1 MGP_C3HHeJ_G0021988.1 mouse_genomes_project 15 93706610 93749457 - MGP_C3HHeJ_P0042007 Gxylt1 protein_coding protein_coding MGP_C3HHeJ_T0042008.1 MGP_C3HHeJ_G0021988.1 mouse_genomes_project 15 93711320 93749447 - MGP_C3HHeJ_P0042008 Gxylt1 protein_coding protein_coding MGP_C3HHeJ_T0040555.1 MGP_C3HHeJ_G0021550.1 mouse_genomes_project 15 36758717 36790156 + MGP_C3HHeJ_P0040555 Atp6v1c1 protein_coding protein_coding MGP_C3HHeJ_T0040814.1 MGP_C3HHeJ_G0021648.1 mouse_genomes_project 15 65791107 65822980 + MGP_C3HHeJ_P0040814 Wisp1 protein_coding protein_coding MGP_C3HHeJ_T0040815.1 MGP_C3HHeJ_G0021648.1 mouse_genomes_project 15 65791174 65819856 + MGP_C3HHeJ_P0040815 Wisp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040816.1 MGP_C3HHeJ_G0021648.1 mouse_genomes_project 15 65791295 65819234 + MGP_C3HHeJ_P0040816 Wisp1 protein_coding protein_coding MGP_C3HHeJ_T0040817.1 MGP_C3HHeJ_G0021648.1 mouse_genomes_project 15 65809095 65819014 + Wisp1 protein_coding processed_transcript MGP_C3HHeJ_T0042273.1 MGP_C3HHeJ_G0022077.1 mouse_genomes_project 15 100822075 100835499 - MGP_C3HHeJ_P0042273 protein_coding protein_coding MGP_C3HHeJ_T0042274.1 MGP_C3HHeJ_G0022077.1 mouse_genomes_project 15 100822080 100877964 - MGP_C3HHeJ_P0042274 protein_coding protein_coding MGP_C3HHeJ_T0017241.1 MGP_C3HHeJ_G0015061.1 mouse_genomes_project 15 67245351 67248066 - Gm26621 processed_transcript TEC MGP_C3HHeJ_T0017242.1 MGP_C3HHeJ_G0015061.1 mouse_genomes_project 15 67245772 67248046 - Gm26621 processed_transcript processed_transcript MGP_C3HHeJ_T0042146.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99323762 99355743 - MGP_C3HHeJ_P0042146 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042147.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99323773 99329348 - protein_coding processed_transcript MGP_C3HHeJ_T0042148.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99329538 99355743 - MGP_C3HHeJ_P0042148 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042149.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99330466 99341127 - protein_coding retained_intron MGP_C3HHeJ_T0042150.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99330667 99333353 - protein_coding retained_intron MGP_C3HHeJ_T0042151.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99330894 99351894 - protein_coding retained_intron MGP_C3HHeJ_T0042152.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99335007 99355652 - protein_coding retained_intron MGP_C3HHeJ_T0042153.1 MGP_C3HHeJ_G0022034.1 mouse_genomes_project 15 99345042 99355787 - protein_coding retained_intron MGP_C3HHeJ_T0042242.1 MGP_C3HHeJ_G0022068.1 mouse_genomes_project 15 100480381 100484344 + MGP_C3HHeJ_P0042242 Aqp6 protein_coding protein_coding MGP_C3HHeJ_T0041741.1 MGP_C3HHeJ_G0021910.1 mouse_genomes_project 15 84169004 84191062 + MGP_C3HHeJ_P0041741 Samm50 protein_coding protein_coding MGP_C3HHeJ_T0041838.1 MGP_C3HHeJ_G0021946.1 mouse_genomes_project 15 89163016 89232015 - MGP_C3HHeJ_P0041838 Ttll8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041839.1 MGP_C3HHeJ_G0021946.1 mouse_genomes_project 15 89186501 89232007 - MGP_C3HHeJ_P0041839 Ttll8 protein_coding protein_coding MGP_C3HHeJ_T0041840.1 MGP_C3HHeJ_G0021946.1 mouse_genomes_project 15 89186557 89231656 - MGP_C3HHeJ_P0041840 Ttll8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041841.1 MGP_C3HHeJ_G0021946.1 mouse_genomes_project 15 89186635 89232279 - MGP_C3HHeJ_P0041841 Ttll8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0041842.1 MGP_C3HHeJ_G0021946.1 mouse_genomes_project 15 89188272 89192472 - Ttll8 protein_coding retained_intron MGP_C3HHeJ_T0041912.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658508 89675573 + MGP_C3HHeJ_P0041912 Ncaph2 protein_coding protein_coding MGP_C3HHeJ_T0041913.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658525 89675573 + MGP_C3HHeJ_P0041913 Ncaph2 protein_coding protein_coding MGP_C3HHeJ_T0041914.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658525 89675573 + MGP_C3HHeJ_P0041914 Ncaph2 protein_coding protein_coding MGP_C3HHeJ_T0041915.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658552 89675573 + MGP_C3HHeJ_P0041915 Ncaph2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041916.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658594 89666694 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041917.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658610 89666718 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041918.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89658703 89668145 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041919.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89672505 89673489 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041920.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89672691 89674054 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041921.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89672846 89674003 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041922.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89673111 89673746 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0041923.1 MGP_C3HHeJ_G0021963.1 mouse_genomes_project 15 89673460 89674271 + Ncaph2 protein_coding retained_intron MGP_C3HHeJ_T0011290.1 MGP_C3HHeJ_G0009423.1 mouse_genomes_project 15 33990273 33990528 + Gm25372 misc_RNA misc_RNA MGP_C3HHeJ_T0042520.1 MGP_C3HHeJ_G0022157.1 mouse_genomes_project 15 104144522 104152928 + MGP_C3HHeJ_P0042520 Hoxc13 protein_coding protein_coding MGP_C3HHeJ_T0098996.1 MGP_C3HHeJ_G0037190.1 mouse_genomes_project 15 71521635 71521697 - Gm24390 snRNA snRNA MGP_C3HHeJ_T0101765.1 MGP_C3HHeJ_G0039730.1 mouse_genomes_project 15 99239346 99244949 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0042521.1 MGP_C3HHeJ_G0022158.1 mouse_genomes_project 15 104160866 104162728 + MGP_C3HHeJ_P0042521 Hoxc12 protein_coding protein_coding MGP_C3HHeJ_T0040719.1 MGP_C3HHeJ_G0021619.1 mouse_genomes_project 15 57497074 57510236 + MGP_C3HHeJ_P0040719 Rnf139 protein_coding protein_coding MGP_C3HHeJ_T0098990.1 MGP_C3HHeJ_G0037184.1 mouse_genomes_project 15 57419148 57419304 - Gm24041 snRNA snRNA MGP_C3HHeJ_T0040588.1 MGP_C3HHeJ_G0021566.1 mouse_genomes_project 15 41338360 41371059 - MGP_C3HHeJ_P0040588 Eif3e protein_coding protein_coding MGP_C3HHeJ_T0042375.1 MGP_C3HHeJ_G0022105.1 mouse_genomes_project 15 102357422 102364056 + MGP_C3HHeJ_P0042375 Atg101 protein_coding protein_coding MGP_C3HHeJ_T0041959.1 MGP_C3HHeJ_G0021975.1 mouse_genomes_project 15 89891492 89897752 + MGP_C3HHeJ_P0041959 Acr protein_coding protein_coding MGP_C3HHeJ_T0041550.1 MGP_C3HHeJ_G0021850.1 mouse_genomes_project 15 81145400 81146774 - MGP_C3HHeJ_P0041550 Dnajb7 protein_coding protein_coding MGP_C3HHeJ_T0041777.1 MGP_C3HHeJ_G0021923.1 mouse_genomes_project 15 85094083 85161028 - MGP_C3HHeJ_P0041777 Smc1b protein_coding protein_coding MGP_C3HHeJ_T0040596.1 MGP_C3HHeJ_G0021572.1 mouse_genomes_project 15 42575213 42716375 + MGP_C3HHeJ_P0040596 Pkhd1l1 protein_coding protein_coding MGP_C3HHeJ_T0040597.1 MGP_C3HHeJ_G0021572.1 mouse_genomes_project 15 42575213 42716381 + MGP_C3HHeJ_P0040597 Pkhd1l1 protein_coding protein_coding MGP_C3HHeJ_T0011297.1 MGP_C3HHeJ_G0009430.1 mouse_genomes_project 15 75594461 75594746 - Mirt2 misc_RNA misc_RNA MGP_C3HHeJ_T0042553.1 MGP_C3HHeJ_G0022171.1 mouse_genomes_project 15 104564776 104566968 - MGP_C3HHeJ_P0042553 Gpr84 protein_coding protein_coding MGP_C3HHeJ_T0040232.1 MGP_C3HHeJ_G0021447.1 mouse_genomes_project 15 4851589 5094385 - MGP_C3HHeJ_P0040232 Wdr70 protein_coding protein_coding MGP_C3HHeJ_T0040274.1 MGP_C3HHeJ_G0021459.1 mouse_genomes_project 15 6524259 6554253 - MGP_C3HHeJ_P0040274 Il7r protein_coding protein_coding MGP_C3HHeJ_T0041202.1 MGP_C3HHeJ_G0021750.1 mouse_genomes_project 15 76058257 76065339 - MGP_C3HHeJ_P0041202 Lrrc24 protein_coding protein_coding MGP_C3HHeJ_T0041203.1 MGP_C3HHeJ_G0021750.1 mouse_genomes_project 15 76059188 76061397 - Lrrc24 protein_coding retained_intron MGP_C3HHeJ_T0041204.1 MGP_C3HHeJ_G0021750.1 mouse_genomes_project 15 76062773 76065325 - Lrrc24 protein_coding retained_intron MGP_C3HHeJ_T0041205.1 MGP_C3HHeJ_G0021750.1 mouse_genomes_project 15 76064627 76067002 - MGP_C3HHeJ_P0041205 Lrrc24 protein_coding protein_coding MGP_C3HHeJ_T0017229.1 MGP_C3HHeJ_G0015055.1 mouse_genomes_project 15 55219860 55224377 + Has2os processed_transcript antisense MGP_C3HHeJ_T0017230.1 MGP_C3HHeJ_G0015055.1 mouse_genomes_project 15 55223468 55312842 + Has2os processed_transcript antisense MGP_C3HHeJ_T0017231.1 MGP_C3HHeJ_G0015055.1 mouse_genomes_project 15 55223870 55312558 + Has2os processed_transcript antisense MGP_C3HHeJ_T0017232.1 MGP_C3HHeJ_G0015055.1 mouse_genomes_project 15 55296808 55312521 + Has2os processed_transcript lincRNA MGP_C3HHeJ_T0042361.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199470 102217400 + MGP_C3HHeJ_P0042361 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042362.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199485 102205677 + MGP_C3HHeJ_P0042362 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042363.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199499 102215697 + MGP_C3HHeJ_P0042363 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042364.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199499 102206329 + MGP_C3HHeJ_P0042364 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042365.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199522 102215696 + MGP_C3HHeJ_P0042365 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042366.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199870 102215698 + MGP_C3HHeJ_P0042366 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042367.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102199872 102215696 + MGP_C3HHeJ_P0042367 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042368.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102204398 102206480 + MGP_C3HHeJ_P0042368 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042369.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102205115 102217400 + MGP_C3HHeJ_P0042369 Acvrl1 protein_coding protein_coding MGP_C3HHeJ_T0042370.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102206665 102208039 + Acvrl1 protein_coding retained_intron MGP_C3HHeJ_T0042371.1 MGP_C3HHeJ_G0022101.1 mouse_genomes_project 15 102208606 102214641 + Acvrl1 protein_coding processed_transcript MGP_C3HHeJ_T0041739.1 MGP_C3HHeJ_G0021908.1 mouse_genomes_project 15 84080847 84091384 - MGP_C3HHeJ_P0041739 Pnpla5 protein_coding protein_coding MGP_C3HHeJ_T0009956.1 MGP_C3HHeJ_G0008089.1 mouse_genomes_project 15 36577913 36577988 - Mir6951 miRNA miRNA MGP_C3HHeJ_T0099008.1 MGP_C3HHeJ_G0037202.1 mouse_genomes_project 15 86322758 86322862 - Gm22818 snRNA snRNA MGP_C3HHeJ_T0040324.1 MGP_C3HHeJ_G0021474.1 mouse_genomes_project 15 8470683 8486659 - MGP_C3HHeJ_P0040324 Tars protein_coding protein_coding MGP_C3HHeJ_T0042309.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101602390 101630135 - MGP_C3HHeJ_P0042309 Pou6f1 protein_coding protein_coding MGP_C3HHeJ_T0042310.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101602392 101630309 - MGP_C3HHeJ_P0042310 Pou6f1 protein_coding protein_coding MGP_C3HHeJ_T0042311.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101602392 101618302 - MGP_C3HHeJ_P0042311 Pou6f1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042312.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101602392 101612732 - MGP_C3HHeJ_P0042312 Pou6f1 protein_coding protein_coding MGP_C3HHeJ_T0042313.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101602395 101607312 - Pou6f1 protein_coding retained_intron MGP_C3HHeJ_T0042314.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101605321 101621402 - MGP_C3HHeJ_P0042314 Pou6f1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042315.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101605321 101621402 - MGP_C3HHeJ_P0042315 Pou6f1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042316.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101612657 101618405 - Pou6f1 protein_coding retained_intron MGP_C3HHeJ_T0042317.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101612982 101630189 - Pou6f1 protein_coding processed_transcript MGP_C3HHeJ_T0042318.1 MGP_C3HHeJ_G0022091.1 mouse_genomes_project 15 101614991 101630189 - Pou6f1 protein_coding processed_transcript MGP_C3HHeJ_T0097865.1 MGP_C3HHeJ_G0036077.1 mouse_genomes_project 15 75231510 75233899 + pseudogene pseudogene MGP_C3HHeJ_T0009953.1 MGP_C3HHeJ_G0008086.1 mouse_genomes_project 15 34800102 34800176 - Gm25303 miRNA miRNA MGP_C3HHeJ_T0003520.1 MGP_C3HHeJ_G0003194.1 mouse_genomes_project 15 959660 964835 - antisense antisense MGP_C3HHeJ_T0006697.1 MGP_C3HHeJ_G0005519.1 mouse_genomes_project 15 76443400 76455268 + 1700109K24Rik lincRNA lincRNA MGP_C3HHeJ_T0010020.1 MGP_C3HHeJ_G0008153.1 mouse_genomes_project 15 104609657 104609728 - Mir6963 miRNA miRNA MGP_C3HHeJ_T0040439.1 MGP_C3HHeJ_G0021514.1 mouse_genomes_project 15 30634890 30635405 + Sdc2 protein_coding processed_transcript MGP_C3HHeJ_T0040440.1 MGP_C3HHeJ_G0021514.1 mouse_genomes_project 15 30634890 30910679 + MGP_C3HHeJ_P0040440 Sdc2 protein_coding protein_coding MGP_C3HHeJ_T0041563.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81430075 81454409 + MGP_C3HHeJ_P0041563 L3mbtl2 protein_coding protein_coding MGP_C3HHeJ_T0041564.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81430120 81454399 + MGP_C3HHeJ_P0041564 L3mbtl2 protein_coding protein_coding MGP_C3HHeJ_T0041565.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81430140 81454399 + L3mbtl2 protein_coding retained_intron MGP_C3HHeJ_T0041566.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81430142 81454393 + L3mbtl2 protein_coding processed_transcript MGP_C3HHeJ_T0041567.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81430142 81454409 + MGP_C3HHeJ_P0041567 L3mbtl2 protein_coding protein_coding MGP_C3HHeJ_T0041568.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81430187 81448159 + L3mbtl2 protein_coding processed_transcript MGP_C3HHeJ_T0041569.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81434779 81436464 + L3mbtl2 protein_coding retained_intron MGP_C3HHeJ_T0041570.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81434848 81441728 + L3mbtl2 protein_coding processed_transcript MGP_C3HHeJ_T0041571.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81441616 81443389 + MGP_C3HHeJ_P0041571 L3mbtl2 protein_coding protein_coding MGP_C3HHeJ_T0041573.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81448102 81449944 + L3mbtl2 protein_coding retained_intron MGP_C3HHeJ_T0041574.1 MGP_C3HHeJ_G0021854.1 mouse_genomes_project 15 81452115 81453281 + L3mbtl2 protein_coding retained_intron MGP_C3HHeJ_T0006731.1 MGP_C3HHeJ_G0005543.1 mouse_genomes_project 15 103667098 103671663 - lincRNA lincRNA MGP_C3HHeJ_T0042333.1 MGP_C3HHeJ_G0022097.1 mouse_genomes_project 15 101810664 101823709 + MGP_C3HHeJ_P0042333 Slc4a8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042334.1 MGP_C3HHeJ_G0022097.1 mouse_genomes_project 15 101810683 101823589 + Slc4a8 protein_coding retained_intron MGP_C3HHeJ_T0042335.1 MGP_C3HHeJ_G0022097.1 mouse_genomes_project 15 101810725 101867709 + MGP_C3HHeJ_P0042335 Slc4a8 protein_coding protein_coding MGP_C3HHeJ_T0042336.1 MGP_C3HHeJ_G0022097.1 mouse_genomes_project 15 101854813 101858356 + Slc4a8 protein_coding retained_intron MGP_C3HHeJ_T0042337.1 MGP_C3HHeJ_G0022097.1 mouse_genomes_project 15 101864260 101868107 + Slc4a8 protein_coding processed_transcript MGP_C3HHeJ_T0042338.1 MGP_C3HHeJ_G0022097.1 mouse_genomes_project 15 101866431 101867878 + Slc4a8 protein_coding retained_intron MGP_C3HHeJ_T0017250.1 MGP_C3HHeJ_G0015067.1 mouse_genomes_project 15 79413541 79415766 + Gm16575 processed_transcript processed_transcript MGP_C3HHeJ_T0012930.1 MGP_C3HHeJ_G0011034.1 mouse_genomes_project 15 35463798 35465245 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042054.1 MGP_C3HHeJ_G0022005.1 mouse_genomes_project 15 97201175 97271969 - MGP_C3HHeJ_P0042054 Slc38a1 protein_coding protein_coding MGP_C3HHeJ_T0042055.1 MGP_C3HHeJ_G0022005.1 mouse_genomes_project 15 97201175 97271588 - MGP_C3HHeJ_P0042055 Slc38a1 protein_coding protein_coding MGP_C3HHeJ_T0042056.1 MGP_C3HHeJ_G0022005.1 mouse_genomes_project 15 97201175 97272500 - MGP_C3HHeJ_P0042056 Slc38a1 protein_coding protein_coding MGP_C3HHeJ_T0042131.1 MGP_C3HHeJ_G0022028.1 mouse_genomes_project 15 99132259 99133361 - MGP_C3HHeJ_P0042131 Olfr283 protein_coding protein_coding MGP_C3HHeJ_T0040454.1 MGP_C3HHeJ_G0021519.1 mouse_genomes_project 15 32182127 32325940 + MGP_C3HHeJ_P0040454 Matn2 protein_coding protein_coding MGP_C3HHeJ_T0040455.1 MGP_C3HHeJ_G0021519.1 mouse_genomes_project 15 32182128 32325944 + MGP_C3HHeJ_P0040455 Matn2 protein_coding protein_coding MGP_C3HHeJ_T0042045.1 MGP_C3HHeJ_G0022001.1 mouse_genomes_project 15 96382842 96572508 + MGP_C3HHeJ_P0042045 Ano6 protein_coding protein_coding MGP_C3HHeJ_T0042046.1 MGP_C3HHeJ_G0022001.1 mouse_genomes_project 15 96382983 96572521 + MGP_C3HHeJ_P0042046 Ano6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042329.1 MGP_C3HHeJ_G0022095.1 mouse_genomes_project 15 101707010 101728118 - MGP_C3HHeJ_P0042329 Cela1 protein_coding protein_coding MGP_C3HHeJ_T0009982.1 MGP_C3HHeJ_G0008115.1 mouse_genomes_project 15 81992723 81992792 + Mir33 miRNA miRNA MGP_C3HHeJ_T0040728.1 MGP_C3HHeJ_G0021624.1 mouse_genomes_project 15 57956068 57998832 - MGP_C3HHeJ_P0040728 E430025E21Rik protein_coding protein_coding MGP_C3HHeJ_T0040168.1 MGP_C3HHeJ_G0021429.1 mouse_genomes_project 15 1271606 1426804 + MGP_C3HHeJ_P0040168 Plcxd3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040169.1 MGP_C3HHeJ_G0021429.1 mouse_genomes_project 15 1271619 1487634 + MGP_C3HHeJ_P0040169 Plcxd3 protein_coding protein_coding MGP_C3HHeJ_T0009992.1 MGP_C3HHeJ_G0008125.1 mouse_genomes_project 15 82872290 82872369 - Mir3080 miRNA miRNA MGP_C3HHeJ_T0041831.1 MGP_C3HHeJ_G0021942.1 mouse_genomes_project 15 89000637 89027389 + protein_coding processed_transcript MGP_C3HHeJ_T0040612.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49012339 49251691 - MGP_C3HHeJ_P0040612 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040613.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49016009 49251713 - MGP_C3HHeJ_P0040613 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040614.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49016027 49251054 - MGP_C3HHeJ_P0040614 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040615.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49018032 49251051 - MGP_C3HHeJ_P0040615 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040616.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49018033 49244814 - MGP_C3HHeJ_P0040616 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040617.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49018049 49251714 - MGP_C3HHeJ_P0040617 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040618.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49178409 49186423 - MGP_C3HHeJ_P0040618 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0040619.1 MGP_C3HHeJ_G0021577.1 mouse_genomes_project 15 49205758 49253327 - MGP_C3HHeJ_P0040619 Trps1 protein_coding protein_coding MGP_C3HHeJ_T0012961.1 MGP_C3HHeJ_G0011065.1 mouse_genomes_project 15 85145012 85146159 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042260.1 MGP_C3HHeJ_G0022073.1 mouse_genomes_project 15 100605491 100612976 + MGP_C3HHeJ_P0042260 Gpd1 protein_coding protein_coding MGP_C3HHeJ_T0042261.1 MGP_C3HHeJ_G0022073.1 mouse_genomes_project 15 100605555 100611763 + MGP_C3HHeJ_P0042261 Gpd1 protein_coding protein_coding MGP_C3HHeJ_T0042262.1 MGP_C3HHeJ_G0022073.1 mouse_genomes_project 15 100607972 100610018 + Gpd1 protein_coding retained_intron MGP_C3HHeJ_T0040563.1 MGP_C3HHeJ_G0021555.1 mouse_genomes_project 15 37090849 37125204 + MGP_C3HHeJ_P0040563 Dcaf13 protein_coding protein_coding MGP_C3HHeJ_T0040386.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23266226 23468216 + MGP_C3HHeJ_P0040386 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040387.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23266244 23433324 + MGP_C3HHeJ_P0040387 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040388.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23266250 23348134 + Myo10 protein_coding retained_intron MGP_C3HHeJ_T0040389.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23318582 23369987 + Myo10 protein_coding processed_transcript MGP_C3HHeJ_T0040390.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23360021 23370038 + Myo10 protein_coding retained_intron MGP_C3HHeJ_T0040391.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23388507 23434754 + MGP_C3HHeJ_P0040391 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040392.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23405119 23433334 + MGP_C3HHeJ_P0040392 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040393.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23411612 23429849 + MGP_C3HHeJ_P0040393 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040394.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23411632 23433969 + MGP_C3HHeJ_P0040394 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040395.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23421407 23430098 + MGP_C3HHeJ_P0040395 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040396.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23427739 23434617 + MGP_C3HHeJ_P0040396 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040397.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23428058 23468222 + MGP_C3HHeJ_P0040397 Myo10 protein_coding protein_coding MGP_C3HHeJ_T0040398.1 MGP_C3HHeJ_G0021493.1 mouse_genomes_project 15 23433749 23434928 + Myo10 protein_coding retained_intron MGP_C3HHeJ_T0042118.1 MGP_C3HHeJ_G0022020.1 mouse_genomes_project 15 98803092 98842390 + MGP_C3HHeJ_P0042118 Pfkm protein_coding protein_coding MGP_C3HHeJ_T0006710.1 MGP_C3HHeJ_G0005528.1 mouse_genomes_project 15 85643589 85656210 + AU022754 lincRNA lincRNA MGP_C3HHeJ_T0040176.1 MGP_C3HHeJ_G0021431.1 mouse_genomes_project 15 1802498 1866667 + MGP_C3HHeJ_P0040176 Mroh2b protein_coding protein_coding MGP_C3HHeJ_T0009999.1 MGP_C3HHeJ_G0008132.1 mouse_genomes_project 15 87977870 87977964 - Mir6393 miRNA miRNA MGP_C3HHeJ_T0040638.1 MGP_C3HHeJ_G0021587.1 mouse_genomes_project 15 52713000 52740871 - MGP_C3HHeJ_P0040638 Tnfrsf11b protein_coding protein_coding MGP_C3HHeJ_T0041162.1 MGP_C3HHeJ_G0021739.1 mouse_genomes_project 15 75931415 75945282 - MGP_C3HHeJ_P0041162 Cpsf1 protein_coding protein_coding MGP_C3HHeJ_T0040442.1 MGP_C3HHeJ_G0021516.1 mouse_genomes_project 15 31570450 31574452 - MGP_C3HHeJ_P0040442 Tspyl5 protein_coding protein_coding MGP_C3HHeJ_T0042155.1 MGP_C3HHeJ_G0022036.1 mouse_genomes_project 15 99380032 99399560 - MGP_C3HHeJ_P0042155 Adcy6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042156.1 MGP_C3HHeJ_G0022036.1 mouse_genomes_project 15 99380040 99399126 - MGP_C3HHeJ_P0042156 Adcy6 protein_coding protein_coding MGP_C3HHeJ_T0041577.1 MGP_C3HHeJ_G0021856.1 mouse_genomes_project 15 81471107 81500354 - MGP_C3HHeJ_P0041577 Rangap1 protein_coding protein_coding MGP_C3HHeJ_T0041578.1 MGP_C3HHeJ_G0021856.1 mouse_genomes_project 15 81471107 81500354 - MGP_C3HHeJ_P0041578 Rangap1 protein_coding protein_coding MGP_C3HHeJ_T0041579.1 MGP_C3HHeJ_G0021856.1 mouse_genomes_project 15 81471476 81500301 - MGP_C3HHeJ_P0041579 Rangap1 protein_coding protein_coding MGP_C3HHeJ_T0041222.1 MGP_C3HHeJ_G0021756.1 mouse_genomes_project 15 76264027 76281844 - MGP_C3HHeJ_P0041222 Zfp647 protein_coding unknown_likely_coding MGP_C3HHeJ_T0098986.1 MGP_C3HHeJ_G0037180.1 mouse_genomes_project 15 50939886 50939990 + Gm23545 snRNA snRNA MGP_C3HHeJ_T0003521.1 MGP_C3HHeJ_G0003195.1 mouse_genomes_project 15 2092445 2103061 - Gm15938 antisense antisense MGP_C3HHeJ_T0099010.1 MGP_C3HHeJ_G0037204.1 mouse_genomes_project 15 89296955 89297114 + Gm23737 snRNA snRNA MGP_C3HHeJ_T0003568.1 MGP_C3HHeJ_G0003231.1 mouse_genomes_project 15 100883060 100884184 - 2310068J16Rik antisense antisense MGP_C3HHeJ_T0100269.1 MGP_C3HHeJ_G0038463.1 mouse_genomes_project 15 79764719 79764813 - Snord83b snoRNA snoRNA MGP_C3HHeJ_T0040650.1 MGP_C3HHeJ_G0021594.1 mouse_genomes_project 15 53586700 53601300 - MGP_C3HHeJ_P0040650 Gm9920 protein_coding protein_coding MGP_C3HHeJ_T0040651.1 MGP_C3HHeJ_G0021594.1 mouse_genomes_project 15 53586848 53601178 - MGP_C3HHeJ_P0040651 Gm9920 protein_coding protein_coding MGP_C3HHeJ_T0040652.1 MGP_C3HHeJ_G0021594.1 mouse_genomes_project 15 53597993 53601395 - Gm9920 protein_coding processed_transcript MGP_C3HHeJ_T0040653.1 MGP_C3HHeJ_G0021594.1 mouse_genomes_project 15 53599580 53601178 - Gm9920 protein_coding retained_intron MGP_C3HHeJ_T0041220.1 MGP_C3HHeJ_G0021755.1 mouse_genomes_project 15 76255939 76258473 + MGP_C3HHeJ_P0041220 Rpl8 protein_coding protein_coding MGP_C3HHeJ_T0041221.1 MGP_C3HHeJ_G0021755.1 mouse_genomes_project 15 76255944 76258434 + MGP_C3HHeJ_P0041221 Rpl8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042197.1 MGP_C3HHeJ_G0022054.1 mouse_genomes_project 15 99926056 99929181 - MGP_C3HHeJ_P0042197 C1ql4 protein_coding protein_coding MGP_C3HHeJ_T0040711.1 MGP_C3HHeJ_G0021613.1 mouse_genomes_project 15 56908498 56941796 - MGP_C3HHeJ_P0040711 Anxa13 protein_coding protein_coding MGP_C3HHeJ_T0098984.1 MGP_C3HHeJ_G0037178.1 mouse_genomes_project 15 47200339 47200424 - Gm23185 snRNA snRNA MGP_C3HHeJ_T0009990.1 MGP_C3HHeJ_G0008123.1 mouse_genomes_project 15 82540020 82540077 - Gm27463 miRNA miRNA MGP_C3HHeJ_T0012923.1 MGP_C3HHeJ_G0011027.1 mouse_genomes_project 15 11720029 11720431 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012931.1 MGP_C3HHeJ_G0011035.1 mouse_genomes_project 15 35538459 35538932 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006714.1 MGP_C3HHeJ_G0005532.1 mouse_genomes_project 15 92769143 92806432 + Gm26760 lincRNA lincRNA MGP_C3HHeJ_T0101356.1 MGP_C3HHeJ_G0039426.1 mouse_genomes_project 15 62619863 62673984 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0040626.1 MGP_C3HHeJ_G0021581.1 mouse_genomes_project 15 50474622 50480238 + MGP_C3HHeJ_P0040626 Aard protein_coding protein_coding MGP_C3HHeJ_T0041217.1 MGP_C3HHeJ_G0021753.1 mouse_genomes_project 15 76229434 76242734 + MGP_C3HHeJ_P0041217 Zfp7 protein_coding protein_coding MGP_C3HHeJ_T0040181.1 MGP_C3HHeJ_G0021435.1 mouse_genomes_project 15 2032628 2033199 - MGP_C3HHeJ_P0040181 Gm10250 protein_coding protein_coding MGP_C3HHeJ_T0006732.1 MGP_C3HHeJ_G0005544.1 mouse_genomes_project 15 104168676 104172345 - Hotair lincRNA lincRNA MGP_C3HHeJ_T0041551.1 MGP_C3HHeJ_G0021851.1 mouse_genomes_project 15 81213138 81226128 + MGP_C3HHeJ_P0041551 Rbx1 protein_coding protein_coding MGP_C3HHeJ_T0041413.1 MGP_C3HHeJ_G0021813.1 mouse_genomes_project 15 79148693 79170080 - MGP_C3HHeJ_P0041413 Kcnj4 protein_coding protein_coding MGP_C3HHeJ_T0042497.1 MGP_C3HHeJ_G0022153.1 mouse_genomes_project 15 103713466 103821124 - MGP_C3HHeJ_P0042497 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100235.1 MGP_C3HHeJ_G0038429.1 mouse_genomes_project 15 13110643 13110771 + Gm25550 snoRNA snoRNA MGP_C3HHeJ_T0040879.1 MGP_C3HHeJ_G0021665.1 mouse_genomes_project 15 72929364 72934712 + MGP_C3HHeJ_P0040879 Gm6569 protein_coding protein_coding MGP_C3HHeJ_T0098992.1 MGP_C3HHeJ_G0037186.1 mouse_genomes_project 15 62237121 62237184 - Gm25702 snRNA snRNA MGP_C3HHeJ_T0041227.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76397421 76412329 + MGP_C3HHeJ_P0041227 Apol6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0041228.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76397767 76408386 + MGP_C3HHeJ_P0041228 Apol6 protein_coding protein_coding MGP_C3HHeJ_T0041229.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76397898 76406553 + MGP_C3HHeJ_P0041229 Apol6 protein_coding protein_coding MGP_C3HHeJ_T0041230.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76397968 76413138 + MGP_C3HHeJ_P0041230 Apol6 protein_coding protein_coding MGP_C3HHeJ_T0041231.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76397970 76407174 + MGP_C3HHeJ_P0041231 Apol6 protein_coding protein_coding MGP_C3HHeJ_T0041232.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76398179 76398931 + Apol6 protein_coding processed_transcript MGP_C3HHeJ_T0041233.1 MGP_C3HHeJ_G0021759.1 mouse_genomes_project 15 76408788 76412075 + Apol6 protein_coding processed_transcript MGP_C3HHeJ_T0012946.1 MGP_C3HHeJ_G0011050.1 mouse_genomes_project 15 63894032 63894344 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0009978.1 MGP_C3HHeJ_G0008111.1 mouse_genomes_project 15 79771223 79771331 - Snord43 miRNA miRNA MGP_C3HHeJ_T0012964.1 MGP_C3HHeJ_G0011068.1 mouse_genomes_project 15 91235498 91236347 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0040627.1 MGP_C3HHeJ_G0021582.1 mouse_genomes_project 15 50725958 50773570 + MGP_C3HHeJ_P0040627 Slc30a8 protein_coding protein_coding MGP_C3HHeJ_T0042281.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101163578 101197716 + MGP_C3HHeJ_P0042281 Atf1 protein_coding protein_coding MGP_C3HHeJ_T0042282.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101163656 101190410 + MGP_C3HHeJ_P0042282 Atf1 protein_coding protein_coding MGP_C3HHeJ_T0042283.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101164048 101168604 + MGP_C3HHeJ_P0042283 Atf1 protein_coding protein_coding MGP_C3HHeJ_T0042284.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101167948 101187853 + MGP_C3HHeJ_P0042284 Atf1 protein_coding protein_coding MGP_C3HHeJ_T0042285.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101167960 101168803 + Atf1 protein_coding retained_intron MGP_C3HHeJ_T0042286.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101167987 101190346 + MGP_C3HHeJ_P0042286 Atf1 protein_coding protein_coding MGP_C3HHeJ_T0042287.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101168522 101197329 + MGP_C3HHeJ_P0042287 Atf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042288.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101168540 101197372 + Atf1 protein_coding processed_transcript MGP_C3HHeJ_T0042289.1 MGP_C3HHeJ_G0022080.1 mouse_genomes_project 15 101190102 101191805 + MGP_C3HHeJ_P0042289 Atf1 protein_coding protein_coding MGP_C3HHeJ_T0098975.1 MGP_C3HHeJ_G0037169.1 mouse_genomes_project 15 28381218 28381281 + Gm24487 snRNA snRNA MGP_C3HHeJ_T0041643.1 MGP_C3HHeJ_G0021877.1 mouse_genomes_project 15 82076767 82096276 + MGP_C3HHeJ_P0041643 Sept3 protein_coding protein_coding MGP_C3HHeJ_T0041644.1 MGP_C3HHeJ_G0021877.1 mouse_genomes_project 15 82077079 82093892 + MGP_C3HHeJ_P0041644 Sept3 protein_coding protein_coding MGP_C3HHeJ_T0040946.1 MGP_C3HHeJ_G0021689.1 mouse_genomes_project 15 74508685 74512685 + MGP_C3HHeJ_P0040946 protein_coding protein_coding MGP_C3HHeJ_T0040953.1 MGP_C3HHeJ_G0021689.1 mouse_genomes_project 15 74509118 74512686 + MGP_C3HHeJ_P0040953 protein_coding protein_coding MGP_C3HHeJ_T0040549.1 MGP_C3HHeJ_G0021549.1 mouse_genomes_project 15 36575682 36606499 - MGP_C3HHeJ_P0040549 Azin1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0040550.1 MGP_C3HHeJ_G0021549.1 mouse_genomes_project 15 36577801 36606638 - MGP_C3HHeJ_P0040550 Azin1 protein_coding protein_coding MGP_C3HHeJ_T0040551.1 MGP_C3HHeJ_G0021549.1 mouse_genomes_project 15 36580115 36584808 - Azin1 protein_coding retained_intron MGP_C3HHeJ_T0040552.1 MGP_C3HHeJ_G0021549.1 mouse_genomes_project 15 36586054 36605492 - MGP_C3HHeJ_P0040552 Azin1 protein_coding protein_coding MGP_C3HHeJ_T0040553.1 MGP_C3HHeJ_G0021549.1 mouse_genomes_project 15 36587803 36605551 - MGP_C3HHeJ_P0040553 Azin1 protein_coding protein_coding MGP_C3HHeJ_T0040554.1 MGP_C3HHeJ_G0021549.1 mouse_genomes_project 15 36601805 36606580 - Azin1 protein_coding processed_transcript MGP_C3HHeJ_T0041483.1 MGP_C3HHeJ_G0021832.1 mouse_genomes_project 15 79825961 79857440 + MGP_C3HHeJ_P0041483 Tab1 protein_coding protein_coding MGP_C3HHeJ_T0009951.1 MGP_C3HHeJ_G0008084.1 mouse_genomes_project 15 34214674 34214793 - Mir8097 miRNA miRNA MGP_C3HHeJ_T0100263.1 MGP_C3HHeJ_G0038457.1 mouse_genomes_project 15 61520142 61520276 + Gm22521 snoRNA snoRNA MGP_C3HHeJ_T0041637.1 MGP_C3HHeJ_G0021873.1 mouse_genomes_project 15 82002781 82008624 - MGP_C3HHeJ_P0041637 Shisa8 protein_coding protein_coding MGP_C3HHeJ_T0040260.1 MGP_C3HHeJ_G0021454.1 mouse_genomes_project 15 6138433 6167686 - MGP_C3HHeJ_P0040260 Skp2 protein_coding protein_coding MGP_C3HHeJ_T0040261.1 MGP_C3HHeJ_G0021454.1 mouse_genomes_project 15 6138433 6167760 - MGP_C3HHeJ_P0040261 Skp2 protein_coding protein_coding MGP_C3HHeJ_T0040262.1 MGP_C3HHeJ_G0021454.1 mouse_genomes_project 15 6139750 6182745 - MGP_C3HHeJ_P0040262 Skp2 protein_coding protein_coding MGP_C3HHeJ_T0040263.1 MGP_C3HHeJ_G0021454.1 mouse_genomes_project 15 6153495 6167673 - Skp2 protein_coding retained_intron MGP_C3HHeJ_T0040265.1 MGP_C3HHeJ_G0021454.1 mouse_genomes_project 15 6179595 6182746 - Skp2 protein_coding processed_transcript MGP_C3HHeJ_T0006673.1 MGP_C3HHeJ_G0005507.1 mouse_genomes_project 15 36826015 36979755 - lincRNA lincRNA MGP_C3HHeJ_T0044536.1 MGP_C3HHeJ_G0022673.1 mouse_genomes_project 16 63763144 63832420 - MGP_C3HHeJ_P0044536 protein_coding protein_coding MGP_C3HHeJ_T0044602.1 MGP_C3HHeJ_G0022696.1 mouse_genomes_project 16 78345933 78369314 + MGP_C3HHeJ_P0044602 Chodl protein_coding protein_coding MGP_C3HHeJ_T0044603.1 MGP_C3HHeJ_G0022696.1 mouse_genomes_project 16 78345933 78364736 + MGP_C3HHeJ_P0044603 Chodl protein_coding protein_coding MGP_C3HHeJ_T0044604.1 MGP_C3HHeJ_G0022696.1 mouse_genomes_project 16 78345933 78367485 + MGP_C3HHeJ_P0044604 Chodl protein_coding protein_coding MGP_C3HHeJ_T0042738.1 MGP_C3HHeJ_G0022220.1 mouse_genomes_project 16 1756481 1765113 - MGP_C3HHeJ_P0042738 Nagpa protein_coding protein_coding MGP_C3HHeJ_T0042739.1 MGP_C3HHeJ_G0022220.1 mouse_genomes_project 16 1756481 1765103 - MGP_C3HHeJ_P0042739 Nagpa protein_coding protein_coding MGP_C3HHeJ_T0042740.1 MGP_C3HHeJ_G0022220.1 mouse_genomes_project 16 1756579 1758866 - Nagpa protein_coding processed_transcript MGP_C3HHeJ_T0042741.1 MGP_C3HHeJ_G0022220.1 mouse_genomes_project 16 1760913 1764578 - Nagpa protein_coding retained_intron MGP_C3HHeJ_T0000018.1 MGP_C3HHeJ_G0000013.1 mouse_genomes_project 16 16444658 16444972 - MGP_C3HHeJ_P0000018 Iglc4 IG_C_gene IG_C_gene MGP_C3HHeJ_T0043079.1 MGP_C3HHeJ_G0022300.1 mouse_genomes_project 16 14194090 14207148 - MGP_C3HHeJ_P0043079 2610318N02Rik protein_coding protein_coding MGP_C3HHeJ_T0042967.1 MGP_C3HHeJ_G0022277.1 mouse_genomes_project 16 11282270 11300501 - MGP_C3HHeJ_P0042967 Fopnl protein_coding protein_coding MGP_C3HHeJ_T0042968.1 MGP_C3HHeJ_G0022277.1 mouse_genomes_project 16 11282475 11300512 - Fopnl protein_coding processed_transcript MGP_C3HHeJ_T0042648.1 MGP_C3HHeJ_G0022196.1 mouse_genomes_project 16 805325 835424 - MGP_C3HHeJ_P0042648 Adcy9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042649.1 MGP_C3HHeJ_G0022196.1 mouse_genomes_project 16 807974 936248 - MGP_C3HHeJ_P0042649 Adcy9 protein_coding protein_coding MGP_C3HHeJ_T0042650.1 MGP_C3HHeJ_G0022196.1 mouse_genomes_project 16 807974 935558 - MGP_C3HHeJ_P0042650 Adcy9 protein_coding protein_coding MGP_C3HHeJ_T0042651.1 MGP_C3HHeJ_G0022196.1 mouse_genomes_project 16 807990 935337 - MGP_C3HHeJ_P0042651 Adcy9 protein_coding protein_coding MGP_C3HHeJ_T0043520.1 MGP_C3HHeJ_G0022395.1 mouse_genomes_project 16 19346695 19400289 - MGP_C3HHeJ_P0043520 Liph protein_coding protein_coding MGP_C3HHeJ_T0043521.1 MGP_C3HHeJ_G0022395.1 mouse_genomes_project 16 19346695 19400289 - MGP_C3HHeJ_P0043521 Liph protein_coding protein_coding MGP_C3HHeJ_T0044500.1 MGP_C3HHeJ_G0022660.1 mouse_genomes_project 16 58114755 58115673 - MGP_C3HHeJ_P0044500 Olfr209 protein_coding protein_coding MGP_C3HHeJ_T0013018.1 MGP_C3HHeJ_G0011122.1 mouse_genomes_project 16 30545931 30546871 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043979.1 MGP_C3HHeJ_G0022518.1 mouse_genomes_project 16 34512478 34517357 - MGP_C3HHeJ_P0043979 Stfa3 protein_coding protein_coding MGP_C3HHeJ_T0043127.1 MGP_C3HHeJ_G0022311.1 mouse_genomes_project 16 14574407 14610960 + MGP_C3HHeJ_P0043127 Crkl protein_coding protein_coding MGP_C3HHeJ_T0013005.1 MGP_C3HHeJ_G0011109.1 mouse_genomes_project 16 17958552 17960054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043519.1 MGP_C3HHeJ_G0022394.1 mouse_genomes_project 16 19333334 19340441 - MGP_C3HHeJ_P0043519 Tmem41a protein_coding protein_coding MGP_C3HHeJ_T0045057.1 MGP_C3HHeJ_G0022816.1 mouse_genomes_project 16 96507229 96566724 + MGP_C3HHeJ_P0045057 Igsf5 protein_coding protein_coding MGP_C3HHeJ_T0045058.1 MGP_C3HHeJ_G0022816.1 mouse_genomes_project 16 96507355 96550556 + MGP_C3HHeJ_P0045058 Igsf5 protein_coding protein_coding MGP_C3HHeJ_T0045059.1 MGP_C3HHeJ_G0022816.1 mouse_genomes_project 16 96507355 96550559 + MGP_C3HHeJ_P0045059 Igsf5 protein_coding protein_coding MGP_C3HHeJ_T0045060.1 MGP_C3HHeJ_G0022816.1 mouse_genomes_project 16 96507355 96674019 + MGP_C3HHeJ_P0045060 Igsf5 protein_coding protein_coding MGP_C3HHeJ_T0045061.1 MGP_C3HHeJ_G0022816.1 mouse_genomes_project 16 96531640 96549856 + Igsf5 protein_coding processed_transcript MGP_C3HHeJ_T0045062.1 MGP_C3HHeJ_G0022816.1 mouse_genomes_project 16 96541737 96566557 + MGP_C3HHeJ_P0045062 Igsf5 protein_coding protein_coding MGP_C3HHeJ_T0100297.1 MGP_C3HHeJ_G0038491.1 mouse_genomes_project 16 33327679 33327882 + Gm25079 snoRNA snoRNA MGP_C3HHeJ_T0044428.1 MGP_C3HHeJ_G0022627.1 mouse_genomes_project 16 55897267 55926767 - MGP_C3HHeJ_P0044428 Tmem30c protein_coding protein_coding MGP_C3HHeJ_T0044429.1 MGP_C3HHeJ_G0022627.1 mouse_genomes_project 16 55897554 55926753 - MGP_C3HHeJ_P0044429 Tmem30c protein_coding protein_coding MGP_C3HHeJ_T0044430.1 MGP_C3HHeJ_G0022627.1 mouse_genomes_project 16 55900436 55926753 - MGP_C3HHeJ_P0044430 Tmem30c protein_coding protein_coding MGP_C3HHeJ_T0044708.1 MGP_C3HHeJ_G0022745.1 mouse_genomes_project 16 88990627 88991024 + MGP_C3HHeJ_P0044708 Gm9789 protein_coding protein_coding MGP_C3HHeJ_T0045053.1 MGP_C3HHeJ_G0022815.1 mouse_genomes_project 16 96368384 96465079 + MGP_C3HHeJ_P0045053 B3galt5 protein_coding protein_coding MGP_C3HHeJ_T0045054.1 MGP_C3HHeJ_G0022815.1 mouse_genomes_project 16 96408299 96458994 + B3galt5 protein_coding processed_transcript MGP_C3HHeJ_T0045055.1 MGP_C3HHeJ_G0022815.1 mouse_genomes_project 16 96408436 96458995 + B3galt5 protein_coding processed_transcript MGP_C3HHeJ_T0045056.1 MGP_C3HHeJ_G0022815.1 mouse_genomes_project 16 96415623 96465077 + MGP_C3HHeJ_P0045056 B3galt5 protein_coding protein_coding MGP_C3HHeJ_T0003585.1 MGP_C3HHeJ_G0003246.1 mouse_genomes_project 16 14173569 14177105 + Gm15585 antisense antisense MGP_C3HHeJ_T0044029.1 MGP_C3HHeJ_G0022527.1 mouse_genomes_project 16 35046184 35067890 - MGP_C3HHeJ_P0044029 Fbxo40 protein_coding protein_coding MGP_C3HHeJ_T0044030.1 MGP_C3HHeJ_G0022527.1 mouse_genomes_project 16 35048655 35055605 - Fbxo40 protein_coding processed_transcript MGP_C3HHeJ_T0044031.1 MGP_C3HHeJ_G0022527.1 mouse_genomes_project 16 35048764 35053494 - Fbxo40 protein_coding retained_intron MGP_C3HHeJ_T0044032.1 MGP_C3HHeJ_G0022527.1 mouse_genomes_project 16 35048797 35055965 - MGP_C3HHeJ_P0044032 Fbxo40 protein_coding protein_coding MGP_C3HHeJ_T0044936.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94408693 94420166 - MGP_C3HHeJ_P0044936 Pigp protein_coding protein_coding MGP_C3HHeJ_T0044937.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94414323 94420571 - MGP_C3HHeJ_P0044937 Pigp protein_coding protein_coding MGP_C3HHeJ_T0044938.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94414323 94420892 - MGP_C3HHeJ_P0044938 Pigp protein_coding protein_coding MGP_C3HHeJ_T0044939.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94414323 94420589 - MGP_C3HHeJ_P0044939 Pigp protein_coding protein_coding MGP_C3HHeJ_T0044940.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94414323 94420892 - MGP_C3HHeJ_P0044940 Pigp protein_coding protein_coding MGP_C3HHeJ_T0044941.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94414328 94415394 - Pigp protein_coding processed_transcript MGP_C3HHeJ_T0044942.1 MGP_C3HHeJ_G0022801.1 mouse_genomes_project 16 94414582 94420386 - MGP_C3HHeJ_P0044942 Pigp protein_coding protein_coding MGP_C3HHeJ_T0099023.1 MGP_C3HHeJ_G0037217.1 mouse_genomes_project 16 5446688 5446796 - Gm25805 snRNA snRNA MGP_C3HHeJ_T0044702.1 MGP_C3HHeJ_G0022741.1 mouse_genomes_project 16 88899067 88899658 - MGP_C3HHeJ_P0044702 1110025L11Rik protein_coding protein_coding MGP_C3HHeJ_T0099026.1 MGP_C3HHeJ_G0037220.1 mouse_genomes_project 16 8007000 8007163 - Gm24145 snRNA snRNA MGP_C3HHeJ_T0043376.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17550585 17573112 - MGP_C3HHeJ_P0043376 Parl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043377.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17550585 17573154 - MGP_C3HHeJ_P0043377 Parl protein_coding protein_coding MGP_C3HHeJ_T0043378.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17550768 17554010 - Parl protein_coding retained_intron MGP_C3HHeJ_T0043379.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17553509 17573107 - Parl protein_coding retained_intron MGP_C3HHeJ_T0043380.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17556293 17559006 - Parl protein_coding retained_intron MGP_C3HHeJ_T0043381.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17557695 17572096 - Parl protein_coding processed_transcript MGP_C3HHeJ_T0043382.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17557721 17573121 - MGP_C3HHeJ_P0043382 Parl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043383.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17563686 17568932 - Parl protein_coding retained_intron MGP_C3HHeJ_T0043384.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17568363 17572580 - Parl protein_coding processed_transcript MGP_C3HHeJ_T0043385.1 MGP_C3HHeJ_G0022370.1 mouse_genomes_project 16 17568890 17573128 - Parl protein_coding retained_intron MGP_C3HHeJ_T0000929.1 MGP_C3HHeJ_G0000868.1 mouse_genomes_project 16 75474453 75476113 + TEC TEC MGP_C3HHeJ_T0000921.1 MGP_C3HHeJ_G0000860.1 mouse_genomes_project 16 16484820 16488290 + TEC TEC MGP_C3HHeJ_T0044080.1 MGP_C3HHeJ_G0022541.1 mouse_genomes_project 16 36479357 36485127 + MGP_C3HHeJ_P0044080 Gm21987 protein_coding protein_coding MGP_C3HHeJ_T0044081.1 MGP_C3HHeJ_G0022541.1 mouse_genomes_project 16 36479362 36485105 + Gm21987 protein_coding processed_transcript MGP_C3HHeJ_T0044082.1 MGP_C3HHeJ_G0022541.1 mouse_genomes_project 16 36479388 36485108 + MGP_C3HHeJ_P0044082 Gm21987 protein_coding protein_coding MGP_C3HHeJ_T0044083.1 MGP_C3HHeJ_G0022541.1 mouse_genomes_project 16 36479406 36485095 + Gm21987 protein_coding retained_intron MGP_C3HHeJ_T0044085.1 MGP_C3HHeJ_G0022541.1 mouse_genomes_project 16 36481607 36485087 + Gm21987 protein_coding retained_intron MGP_C3HHeJ_T0044086.1 MGP_C3HHeJ_G0022541.1 mouse_genomes_project 16 36481659 36485109 + Gm21987 protein_coding processed_transcript MGP_C3HHeJ_T0044928.1 MGP_C3HHeJ_G0022797.1 mouse_genomes_project 16 93953225 93963856 - MGP_C3HHeJ_P0044928 Cldn14 protein_coding protein_coding MGP_C3HHeJ_T0044929.1 MGP_C3HHeJ_G0022797.1 mouse_genomes_project 16 93953225 93963606 - MGP_C3HHeJ_P0044929 Cldn14 protein_coding protein_coding MGP_C3HHeJ_T0044930.1 MGP_C3HHeJ_G0022797.1 mouse_genomes_project 16 93953226 94043978 - MGP_C3HHeJ_P0044930 Cldn14 protein_coding protein_coding MGP_C3HHeJ_T0044931.1 MGP_C3HHeJ_G0022797.1 mouse_genomes_project 16 93953943 93963606 - Cldn14 protein_coding processed_transcript MGP_C3HHeJ_T0044932.1 MGP_C3HHeJ_G0022797.1 mouse_genomes_project 16 93954001 93963856 - Cldn14 protein_coding processed_transcript MGP_C3HHeJ_T0101778.1 MGP_C3HHeJ_G0039743.1 mouse_genomes_project 16 93614291 93616559 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0044641.1 MGP_C3HHeJ_G0022708.1 mouse_genomes_project 16 87137593 87201959 - MGP_C3HHeJ_P0044641 Ltn1 protein_coding protein_coding MGP_C3HHeJ_T0013007.1 MGP_C3HHeJ_G0011111.1 mouse_genomes_project 16 19667628 19668023 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010064.1 MGP_C3HHeJ_G0008197.1 mouse_genomes_project 16 57417110 57417206 - Gm27564 miRNA miRNA MGP_C3HHeJ_T0043978.1 MGP_C3HHeJ_G0022517.1 mouse_genomes_project 16 34459712 34463808 - MGP_C3HHeJ_P0043978 Stfa2 protein_coding protein_coding MGP_C3HHeJ_T0042743.1 MGP_C3HHeJ_G0022222.1 mouse_genomes_project 16 1792735 1804560 + MGP_C3HHeJ_P0042743 Alg1 protein_coding protein_coding MGP_C3HHeJ_T0042744.1 MGP_C3HHeJ_G0022222.1 mouse_genomes_project 16 1792752 1799395 + Alg1 protein_coding retained_intron MGP_C3HHeJ_T0042745.1 MGP_C3HHeJ_G0022222.1 mouse_genomes_project 16 1792752 1804569 + MGP_C3HHeJ_P0042745 Alg1 protein_coding protein_coding MGP_C3HHeJ_T0042746.1 MGP_C3HHeJ_G0022222.1 mouse_genomes_project 16 1794284 1800175 + Alg1 protein_coding processed_transcript MGP_C3HHeJ_T0042747.1 MGP_C3HHeJ_G0022222.1 mouse_genomes_project 16 1799730 1803381 + Alg1 protein_coding retained_intron MGP_C3HHeJ_T0044128.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 38162199 39193776 + MGP_C3HHeJ_P0044128 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044129.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 38162209 40417202 + MGP_C3HHeJ_P0044129 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044130.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 38162224 39425521 + MGP_C3HHeJ_P0044130 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044131.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 38162224 39629886 + MGP_C3HHeJ_P0044131 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044132.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 38162433 38863493 + Lsamp protein_coding processed_transcript MGP_C3HHeJ_T0044133.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 39760765 40386260 + MGP_C3HHeJ_P0044133 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044134.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 39760944 40424065 + MGP_C3HHeJ_P0044134 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044135.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 39761326 39767159 + MGP_C3HHeJ_P0044135 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044136.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 40384030 40415365 + MGP_C3HHeJ_P0044136 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0044137.1 MGP_C3HHeJ_G0022555.1 mouse_genomes_project 16 40384071 40415190 + MGP_C3HHeJ_P0044137 Lsamp protein_coding protein_coding MGP_C3HHeJ_T0006801.1 MGP_C3HHeJ_G0005598.1 mouse_genomes_project 16 95937295 95999644 - 1600002D24Rik lincRNA lincRNA MGP_C3HHeJ_T0006802.1 MGP_C3HHeJ_G0005598.1 mouse_genomes_project 16 95948058 96025511 - 1600002D24Rik lincRNA lincRNA MGP_C3HHeJ_T0043846.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741838 30851463 + MGP_C3HHeJ_P0043846 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043847.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741860 30848959 + MGP_C3HHeJ_P0043847 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043848.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741860 30848959 + MGP_C3HHeJ_P0043848 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043849.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741861 30824925 + Lrch3 protein_coding retained_intron MGP_C3HHeJ_T0043850.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741865 30809832 + MGP_C3HHeJ_P0043850 Lrch3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043851.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741880 30848306 + MGP_C3HHeJ_P0043851 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043852.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30741880 30848515 + MGP_C3HHeJ_P0043852 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043853.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30786484 30795913 + Lrch3 protein_coding processed_transcript MGP_C3HHeJ_T0043854.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30815249 30834453 + MGP_C3HHeJ_P0043854 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043855.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30815277 30834395 + MGP_C3HHeJ_P0043855 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0043856.1 MGP_C3HHeJ_G0022481.1 mouse_genomes_project 16 30821881 30834506 + MGP_C3HHeJ_P0043856 Lrch3 protein_coding protein_coding MGP_C3HHeJ_T0044575.1 MGP_C3HHeJ_G0022685.1 mouse_genomes_project 16 74946394 74955785 + MGP_C3HHeJ_P0044575 Rbm11 protein_coding protein_coding MGP_C3HHeJ_T0044576.1 MGP_C3HHeJ_G0022685.1 mouse_genomes_project 16 74946394 74956919 + MGP_C3HHeJ_P0044576 Rbm11 protein_coding protein_coding MGP_C3HHeJ_T0044577.1 MGP_C3HHeJ_G0022685.1 mouse_genomes_project 16 74946441 74956915 + MGP_C3HHeJ_P0044577 Rbm11 protein_coding protein_coding MGP_C3HHeJ_T0044684.1 MGP_C3HHeJ_G0022725.1 mouse_genomes_project 16 88606127 88606760 + MGP_C3HHeJ_P0044684 Gm5965 protein_coding protein_coding MGP_C3HHeJ_T0042657.1 MGP_C3HHeJ_G0022199.1 mouse_genomes_project 16 1125279 1146898 + MGP_C3HHeJ_P0042657 Glis2 protein_coding protein_coding MGP_C3HHeJ_T0042658.1 MGP_C3HHeJ_G0022199.1 mouse_genomes_project 16 1131729 1141354 + MGP_C3HHeJ_P0042658 Glis2 protein_coding protein_coding MGP_C3HHeJ_T0042659.1 MGP_C3HHeJ_G0022199.1 mouse_genomes_project 16 1139607 1146883 + Glis2 protein_coding retained_intron MGP_C3HHeJ_T0042660.1 MGP_C3HHeJ_G0022199.1 mouse_genomes_project 16 1142350 1144597 + Glis2 protein_coding retained_intron MGP_C3HHeJ_T0042661.1 MGP_C3HHeJ_G0022199.1 mouse_genomes_project 16 1142568 1155865 + Glis2 protein_coding processed_transcript MGP_C3HHeJ_T0100317.1 MGP_C3HHeJ_G0038511.1 mouse_genomes_project 16 73344605 73344740 - Gm22163 snoRNA snoRNA MGP_C3HHeJ_T0000923.1 MGP_C3HHeJ_G0000862.1 mouse_genomes_project 16 21561806 21563527 + TEC TEC MGP_C3HHeJ_T0044285.1 MGP_C3HHeJ_G0022588.1 mouse_genomes_project 16 44088462 44101700 - MGP_C3HHeJ_P0044285 Abhd10 protein_coding protein_coding MGP_C3HHeJ_T0044286.1 MGP_C3HHeJ_G0022588.1 mouse_genomes_project 16 44090288 44101647 - MGP_C3HHeJ_P0044286 Abhd10 protein_coding protein_coding MGP_C3HHeJ_T0044287.1 MGP_C3HHeJ_G0022588.1 mouse_genomes_project 16 44095718 44101630 - Abhd10 protein_coding processed_transcript MGP_C3HHeJ_T0044288.1 MGP_C3HHeJ_G0022588.1 mouse_genomes_project 16 44099090 44101652 - Abhd10 protein_coding processed_transcript MGP_C3HHeJ_T0044289.1 MGP_C3HHeJ_G0022588.1 mouse_genomes_project 16 44099597 44101645 - Abhd10 protein_coding processed_transcript MGP_C3HHeJ_T0101511.1 MGP_C3HHeJ_G0039495.1 mouse_genomes_project 16 17768041 17770149 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0044425.1 MGP_C3HHeJ_G0022625.1 mouse_genomes_project 16 55786645 55797899 - MGP_C3HHeJ_P0044425 Nit2 protein_coding protein_coding MGP_C3HHeJ_T0042666.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1157073 1217485 - MGP_C3HHeJ_P0042666 Coro7 protein_coding protein_coding MGP_C3HHeJ_T0042667.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1158317 1159812 - Coro7 protein_coding processed_transcript MGP_C3HHeJ_T0042668.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1159692 1160607 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0042669.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1159999 1217386 - MGP_C3HHeJ_P0042669 Coro7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042670.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1162818 1165803 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0042671.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1163186 1166979 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0042672.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1165220 1178679 - Coro7 protein_coding processed_transcript MGP_C3HHeJ_T0042673.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1165267 1166985 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0042674.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1166541 1194464 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0042678.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1184528 1217485 - MGP_C3HHeJ_P0042678 Coro7 protein_coding protein_coding MGP_C3HHeJ_T0042679.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1192843 1217421 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0042680.1 MGP_C3HHeJ_G0022201.1 mouse_genomes_project 16 1207849 1217450 - Coro7 protein_coding retained_intron MGP_C3HHeJ_T0043594.1 MGP_C3HHeJ_G0022414.1 mouse_genomes_project 16 20974090 20978918 + MGP_C3HHeJ_P0043594 Rtp1 protein_coding protein_coding MGP_C3HHeJ_T0043607.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23290937 23440662 + MGP_C3HHeJ_P0043607 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043608.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23290939 23512358 + MGP_C3HHeJ_P0043608 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043609.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23290939 23512343 + MGP_C3HHeJ_P0043609 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043610.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23290939 23497400 + MGP_C3HHeJ_P0043610 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043611.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23421218 23488116 + MGP_C3HHeJ_P0043611 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043612.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23421218 23512358 + MGP_C3HHeJ_P0043612 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043613.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23421218 23497400 + MGP_C3HHeJ_P0043613 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0043614.1 MGP_C3HHeJ_G0022422.1 mouse_genomes_project 16 23421218 23512358 + MGP_C3HHeJ_P0043614 Trp63 protein_coding protein_coding MGP_C3HHeJ_T0044470.1 MGP_C3HHeJ_G0022640.1 mouse_genomes_project 16 57492766 57495768 - MGP_C3HHeJ_P0044470 Olfr175-ps1 protein_coding protein_coding MGP_C3HHeJ_T0010054.1 MGP_C3HHeJ_G0008187.1 mouse_genomes_project 16 39433901 39433961 + miRNA miRNA MGP_C3HHeJ_T0006738.1 MGP_C3HHeJ_G0005550.1 mouse_genomes_project 16 7646133 7651691 + Gm26822 lincRNA lincRNA MGP_C3HHeJ_T0003596.1 MGP_C3HHeJ_G0003256.1 mouse_genomes_project 16 30631045 30634765 + Gm26769 antisense antisense MGP_C3HHeJ_T0045033.1 MGP_C3HHeJ_G0022811.1 mouse_genomes_project 16 96251348 96257366 - MGP_C3HHeJ_P0045033 Hmgn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045034.1 MGP_C3HHeJ_G0022811.1 mouse_genomes_project 16 96251885 96257366 - MGP_C3HHeJ_P0045034 Hmgn1 protein_coding protein_coding MGP_C3HHeJ_T0045035.1 MGP_C3HHeJ_G0022811.1 mouse_genomes_project 16 96256366 96257228 - Hmgn1 protein_coding retained_intron MGP_C3HHeJ_T0101146.1 MGP_C3HHeJ_G0039307.1 mouse_genomes_project 16 35992864 35993954 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0100326.1 MGP_C3HHeJ_G0038520.1 mouse_genomes_project 16 87184885 87185021 - Gm25896 snoRNA snoRNA MGP_C3HHeJ_T0098374.1 MGP_C3HHeJ_G0036581.1 mouse_genomes_project 16 1313159 1314871 - Gm15835 sense_intronic sense_intronic MGP_C3HHeJ_T0045076.1 MGP_C3HHeJ_G0022823.1 mouse_genomes_project 16 97762859 97815126 - MGP_C3HHeJ_P0045076 Tmprss2 protein_coding protein_coding MGP_C3HHeJ_T0000130.1 MGP_C3HHeJ_G0000100.1 mouse_genomes_project 16 16329730 16335306 - MGP_C3HHeJ_P0000130 Iglv1 IG_V_gene IG_V_gene MGP_C3HHeJ_T0044070.1 MGP_C3HHeJ_G0022536.1 mouse_genomes_project 16 35978410 35999168 + MGP_C3HHeJ_P0044070 Lrrc58 protein_coding protein_coding MGP_C3HHeJ_T0017269.1 MGP_C3HHeJ_G0015077.1 mouse_genomes_project 16 19996477 19999074 + Gm15651 processed_transcript processed_transcript MGP_C3HHeJ_T0100282.1 MGP_C3HHeJ_G0038476.1 mouse_genomes_project 16 10449306 10449430 - Gm25276 snoRNA snoRNA MGP_C3HHeJ_T0042920.1 MGP_C3HHeJ_G0022267.1 mouse_genomes_project 16 10646945 10666613 - MGP_C3HHeJ_P0042920 Pla2g10 protein_coding protein_coding MGP_C3HHeJ_T0042921.1 MGP_C3HHeJ_G0022267.1 mouse_genomes_project 16 10646947 10667153 - MGP_C3HHeJ_P0042921 Pla2g10 protein_coding protein_coding MGP_C3HHeJ_T0042922.1 MGP_C3HHeJ_G0022267.1 mouse_genomes_project 16 10647282 10666889 - Pla2g10 protein_coding processed_transcript MGP_C3HHeJ_T0042923.1 MGP_C3HHeJ_G0022267.1 mouse_genomes_project 16 10661309 10666849 - Pla2g10 protein_coding processed_transcript MGP_C3HHeJ_T0043585.1 MGP_C3HHeJ_G0022411.1 mouse_genomes_project 16 20676908 20689234 + MGP_C3HHeJ_P0043585 Adipoq protein_coding protein_coding MGP_C3HHeJ_T0043586.1 MGP_C3HHeJ_G0022411.1 mouse_genomes_project 16 20677018 20688498 + MGP_C3HHeJ_P0043586 Adipoq protein_coding protein_coding MGP_C3HHeJ_T0099044.1 MGP_C3HHeJ_G0037238.1 mouse_genomes_project 16 34260965 34261070 - Gm24801 snRNA snRNA MGP_C3HHeJ_T0003626.1 MGP_C3HHeJ_G0003279.1 mouse_genomes_project 16 96205225 96211601 + 1700093J21Rik antisense antisense MGP_C3HHeJ_T0044689.1 MGP_C3HHeJ_G0022728.1 mouse_genomes_project 16 88696431 88696924 - MGP_C3HHeJ_P0044689 Krtap19-1 protein_coding protein_coding MGP_C3HHeJ_T0100292.1 MGP_C3HHeJ_G0038486.1 mouse_genomes_project 16 22472260 22472394 + Gm22672 snoRNA snoRNA MGP_C3HHeJ_T0100298.1 MGP_C3HHeJ_G0038492.1 mouse_genomes_project 16 33674600 33674747 - Gm25967 snoRNA snoRNA MGP_C3HHeJ_T0045067.1 MGP_C3HHeJ_G0022818.1 mouse_genomes_project 16 96613958 96674232 + MGP_C3HHeJ_P0045067 Pcp4 protein_coding protein_coding MGP_C3HHeJ_T0099068.1 MGP_C3HHeJ_G0037262.1 mouse_genomes_project 16 89272397 89272502 - Gm23655 snRNA snRNA MGP_C3HHeJ_T0006747.1 MGP_C3HHeJ_G0005558.1 mouse_genomes_project 16 14359993 14365226 - Gm26635 lincRNA lincRNA MGP_C3HHeJ_T0006769.1 MGP_C3HHeJ_G0005578.1 mouse_genomes_project 16 47568253 47614214 - 1700026J12Rik lincRNA lincRNA MGP_C3HHeJ_T0006770.1 MGP_C3HHeJ_G0005578.1 mouse_genomes_project 16 47568280 47614214 - 1700026J12Rik lincRNA lincRNA MGP_C3HHeJ_T0044563.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73173802 73709249 - MGP_C3HHeJ_P0044563 Robo2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044564.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73174270 73709326 - MGP_C3HHeJ_P0044564 Robo2 protein_coding protein_coding MGP_C3HHeJ_T0044565.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73176319 73709629 - MGP_C3HHeJ_P0044565 Robo2 protein_coding protein_coding MGP_C3HHeJ_T0044566.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73176628 73181852 - Robo2 protein_coding retained_intron MGP_C3HHeJ_T0044567.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73178995 73191221 - Robo2 protein_coding processed_transcript MGP_C3HHeJ_T0044568.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73205328 73710122 - MGP_C3HHeJ_P0044568 Robo2 protein_coding protein_coding MGP_C3HHeJ_T0044569.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73205583 73218935 - Robo2 protein_coding retained_intron MGP_C3HHeJ_T0044570.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73269646 73312866 - Robo2 protein_coding processed_transcript MGP_C3HHeJ_T0044571.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73329013 73709774 - Robo2 protein_coding retained_intron MGP_C3HHeJ_T0044572.1 MGP_C3HHeJ_G0022683.1 mouse_genomes_project 16 73653834 73710162 - Robo2 protein_coding retained_intron MGP_C3HHeJ_T0044363.1 MGP_C3HHeJ_G0022609.1 mouse_genomes_project 16 53795311 53854643 - MGP_C3HHeJ_P0044363 Zpld1 protein_coding protein_coding MGP_C3HHeJ_T0044364.1 MGP_C3HHeJ_G0022609.1 mouse_genomes_project 16 53795311 53867820 - MGP_C3HHeJ_P0044364 Zpld1 protein_coding protein_coding MGP_C3HHeJ_T0013011.1 MGP_C3HHeJ_G0011115.1 mouse_genomes_project 16 23342826 23343747 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044690.1 MGP_C3HHeJ_G0022729.1 mouse_genomes_project 16 88703045 88703650 - MGP_C3HHeJ_P0044690 Krtap19-2 protein_coding protein_coding MGP_C3HHeJ_T0043550.1 MGP_C3HHeJ_G0022404.1 mouse_genomes_project 16 20354001 20361398 + MGP_C3HHeJ_P0043550 Ahsg protein_coding protein_coding MGP_C3HHeJ_T0006777.1 MGP_C3HHeJ_G0005582.1 mouse_genomes_project 16 49198749 49199433 + 1700116B05Rik lincRNA lincRNA MGP_C3HHeJ_T0006778.1 MGP_C3HHeJ_G0005582.1 mouse_genomes_project 16 49198818 49199407 + 1700116B05Rik lincRNA lincRNA MGP_C3HHeJ_T0044403.1 MGP_C3HHeJ_G0022618.1 mouse_genomes_project 16 54806468 54885083 + MGP_C3HHeJ_P0044403 Impg2 protein_coding protein_coding MGP_C3HHeJ_T0044404.1 MGP_C3HHeJ_G0022618.1 mouse_genomes_project 16 54806487 54813766 + Impg2 protein_coding processed_transcript MGP_C3HHeJ_T0044405.1 MGP_C3HHeJ_G0022618.1 mouse_genomes_project 16 54806493 54887679 + MGP_C3HHeJ_P0044405 Impg2 protein_coding protein_coding MGP_C3HHeJ_T0044406.1 MGP_C3HHeJ_G0022618.1 mouse_genomes_project 16 54884116 54884963 + Impg2 protein_coding processed_transcript MGP_C3HHeJ_T0043949.1 MGP_C3HHeJ_G0022506.1 mouse_genomes_project 16 33899646 33931444 + MGP_C3HHeJ_P0043949 Parp9 protein_coding protein_coding MGP_C3HHeJ_T0043950.1 MGP_C3HHeJ_G0022506.1 mouse_genomes_project 16 33899664 33906207 + Parp9 protein_coding retained_intron MGP_C3HHeJ_T0043951.1 MGP_C3HHeJ_G0022506.1 mouse_genomes_project 16 33899695 33910116 + MGP_C3HHeJ_P0043951 Parp9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043952.1 MGP_C3HHeJ_G0022506.1 mouse_genomes_project 16 33903435 33910351 + Parp9 protein_coding processed_transcript MGP_C3HHeJ_T0043953.1 MGP_C3HHeJ_G0022506.1 mouse_genomes_project 16 33903523 33935447 + MGP_C3HHeJ_P0043953 Parp9 protein_coding protein_coding MGP_C3HHeJ_T0043954.1 MGP_C3HHeJ_G0022506.1 mouse_genomes_project 16 33910713 33919837 + MGP_C3HHeJ_P0043954 Parp9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043359.1 MGP_C3HHeJ_G0022363.1 mouse_genomes_project 16 16929883 16978868 - MGP_C3HHeJ_P0043359 Lamp3 protein_coding protein_coding MGP_C3HHeJ_T0042748.1 MGP_C3HHeJ_G0022223.1 mouse_genomes_project 16 1803808 1815572 - MGP_C3HHeJ_P0042748 Eef2kmt protein_coding protein_coding MGP_C3HHeJ_T0042749.1 MGP_C3HHeJ_G0022223.1 mouse_genomes_project 16 1804535 1815530 - Eef2kmt protein_coding retained_intron MGP_C3HHeJ_T0042750.1 MGP_C3HHeJ_G0022223.1 mouse_genomes_project 16 1806969 1815545 - MGP_C3HHeJ_P0042750 Eef2kmt protein_coding protein_coding MGP_C3HHeJ_T0042751.1 MGP_C3HHeJ_G0022223.1 mouse_genomes_project 16 1806981 1808465 - Eef2kmt protein_coding retained_intron MGP_C3HHeJ_T0042752.1 MGP_C3HHeJ_G0022223.1 mouse_genomes_project 16 1808669 1815518 - Eef2kmt protein_coding retained_intron MGP_C3HHeJ_T0043674.1 MGP_C3HHeJ_G0022441.1 mouse_genomes_project 16 27972757 27985136 - MGP_C3HHeJ_P0043674 Cpn2 protein_coding protein_coding MGP_C3HHeJ_T0043980.1 MGP_C3HHeJ_G0022519.1 mouse_genomes_project 16 34557303 34627548 - MGP_C3HHeJ_P0043980 Casr protein_coding protein_coding MGP_C3HHeJ_T0043981.1 MGP_C3HHeJ_G0022519.1 mouse_genomes_project 16 34557303 34627548 - MGP_C3HHeJ_P0043981 Casr protein_coding protein_coding MGP_C3HHeJ_T0043982.1 MGP_C3HHeJ_G0022519.1 mouse_genomes_project 16 34558074 34627020 - MGP_C3HHeJ_P0043982 Casr protein_coding protein_coding MGP_C3HHeJ_T0043983.1 MGP_C3HHeJ_G0022519.1 mouse_genomes_project 16 34581310 34627555 - Casr protein_coding processed_transcript MGP_C3HHeJ_T0044634.1 MGP_C3HHeJ_G0022705.1 mouse_genomes_project 16 85497880 85507154 - MGP_C3HHeJ_P0044634 Adamts1 protein_coding protein_coding MGP_C3HHeJ_T0044635.1 MGP_C3HHeJ_G0022705.1 mouse_genomes_project 16 85499523 85505520 - MGP_C3HHeJ_P0044635 Adamts1 protein_coding protein_coding MGP_C3HHeJ_T0044636.1 MGP_C3HHeJ_G0022705.1 mouse_genomes_project 16 85502278 85503686 - Adamts1 protein_coding processed_transcript MGP_C3HHeJ_T0101510.1 MGP_C3HHeJ_G0039494.1 mouse_genomes_project 16 17710876 17718960 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0003603.1 MGP_C3HHeJ_G0003261.1 mouse_genomes_project 16 33929972 33945347 - Gm15564 antisense antisense MGP_C3HHeJ_T0003604.1 MGP_C3HHeJ_G0003261.1 mouse_genomes_project 16 33929973 33950911 - Gm15564 antisense antisense MGP_C3HHeJ_T0003605.1 MGP_C3HHeJ_G0003261.1 mouse_genomes_project 16 33929995 33945407 - Gm15564 antisense antisense MGP_C3HHeJ_T0043443.1 MGP_C3HHeJ_G0022380.1 mouse_genomes_project 16 17906614 17908687 - MGP_C3HHeJ_P0043443 Camk2n2 protein_coding protein_coding MGP_C3HHeJ_T0013026.1 MGP_C3HHeJ_G0011130.1 mouse_genomes_project 16 36890504 36892085 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044186.1 MGP_C3HHeJ_G0022565.1 mouse_genomes_project 16 42447357 42472091 + MGP_C3HHeJ_P0044186 Naa50 protein_coding protein_coding MGP_C3HHeJ_T0044187.1 MGP_C3HHeJ_G0022565.1 mouse_genomes_project 16 42447380 42472983 + MGP_C3HHeJ_P0044187 Naa50 protein_coding protein_coding MGP_C3HHeJ_T0044188.1 MGP_C3HHeJ_G0022565.1 mouse_genomes_project 16 42447413 42472089 + MGP_C3HHeJ_P0044188 Naa50 protein_coding protein_coding MGP_C3HHeJ_T0044189.1 MGP_C3HHeJ_G0022565.1 mouse_genomes_project 16 42447419 42470787 + MGP_C3HHeJ_P0044189 Naa50 protein_coding protein_coding MGP_C3HHeJ_T0098577.1 MGP_C3HHeJ_G0036773.1 mouse_genomes_project 16 92444125 92463673 + 2410124H12Rik sense_overlapping sense_overlapping MGP_C3HHeJ_T0100328.1 MGP_C3HHeJ_G0038522.1 mouse_genomes_project 16 87556187 87556275 - Gm23994 snoRNA snoRNA MGP_C3HHeJ_T0100308.1 MGP_C3HHeJ_G0038502.1 mouse_genomes_project 16 52882103 52882235 + Gm25853 snoRNA snoRNA MGP_C3HHeJ_T0044276.1 MGP_C3HHeJ_G0022584.1 mouse_genomes_project 16 43965458 43976236 + MGP_C3HHeJ_P0044276 Gcsam protein_coding protein_coding MGP_C3HHeJ_T0044277.1 MGP_C3HHeJ_G0022584.1 mouse_genomes_project 16 43965501 43977864 + MGP_C3HHeJ_P0044277 Gcsam protein_coding protein_coding MGP_C3HHeJ_T0010052.1 MGP_C3HHeJ_G0008185.1 mouse_genomes_project 16 34864380 34864450 + Gm22617 miRNA miRNA MGP_C3HHeJ_T0043633.1 MGP_C3HHeJ_G0022430.1 mouse_genomes_project 16 25003457 25004362 - MGP_C3HHeJ_P0043633 protein_coding protein_coding MGP_C3HHeJ_T0043817.1 MGP_C3HHeJ_G0022476.1 mouse_genomes_project 16 30555523 30604456 + protein_coding processed_transcript MGP_C3HHeJ_T0043818.1 MGP_C3HHeJ_G0022476.1 mouse_genomes_project 16 30578537 30604621 + MGP_C3HHeJ_P0043818 protein_coding protein_coding MGP_C3HHeJ_T0043819.1 MGP_C3HHeJ_G0022476.1 mouse_genomes_project 16 30598532 30604614 + protein_coding processed_transcript MGP_C3HHeJ_T0043820.1 MGP_C3HHeJ_G0022476.1 mouse_genomes_project 16 30598611 30599210 + protein_coding processed_transcript MGP_C3HHeJ_T0043822.1 MGP_C3HHeJ_G0022476.1 mouse_genomes_project 16 30599786 30601181 + protein_coding retained_intron MGP_C3HHeJ_T0043823.1 MGP_C3HHeJ_G0022476.1 mouse_genomes_project 16 30600871 30601384 + protein_coding retained_intron MGP_C3HHeJ_T0043793.1 MGP_C3HHeJ_G0022473.1 mouse_genomes_project 16 30316044 30327270 + MGP_C3HHeJ_P0043793 Zdhhc19 protein_coding protein_coding MGP_C3HHeJ_T0043794.1 MGP_C3HHeJ_G0022473.1 mouse_genomes_project 16 30319421 30387220 + Zdhhc19 protein_coding processed_transcript MGP_C3HHeJ_T0043635.1 MGP_C3HHeJ_G0022432.1 mouse_genomes_project 16 25050067 25106882 + MGP_C3HHeJ_P0043635 Ccdc50 protein_coding protein_coding MGP_C3HHeJ_T0043636.1 MGP_C3HHeJ_G0022432.1 mouse_genomes_project 16 25050178 25101057 + MGP_C3HHeJ_P0043636 Ccdc50 protein_coding protein_coding MGP_C3HHeJ_T0043637.1 MGP_C3HHeJ_G0022432.1 mouse_genomes_project 16 25050178 25094364 + MGP_C3HHeJ_P0043637 Ccdc50 protein_coding protein_coding MGP_C3HHeJ_T0043638.1 MGP_C3HHeJ_G0022432.1 mouse_genomes_project 16 25051134 25093044 + MGP_C3HHeJ_P0043638 Ccdc50 protein_coding protein_coding MGP_C3HHeJ_T0043639.1 MGP_C3HHeJ_G0022432.1 mouse_genomes_project 16 25051166 25052289 + Ccdc50 protein_coding processed_transcript MGP_C3HHeJ_T0044692.1 MGP_C3HHeJ_G0022731.1 mouse_genomes_project 16 88714167 88714471 - MGP_C3HHeJ_P0044692 Krtap19-4 protein_coding protein_coding MGP_C3HHeJ_T0043372.1 MGP_C3HHeJ_G0022367.1 mouse_genomes_project 16 17356891 17393239 + MGP_C3HHeJ_P0043372 Klhl24 protein_coding protein_coding MGP_C3HHeJ_T0045018.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96103533 96204978 - MGP_C3HHeJ_P0045018 protein_coding protein_coding MGP_C3HHeJ_T0045019.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96103890 96204997 - MGP_C3HHeJ_P0045019 protein_coding protein_coding MGP_C3HHeJ_T0045020.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96110711 96204997 - MGP_C3HHeJ_P0045020 protein_coding protein_coding MGP_C3HHeJ_T0045021.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96113878 96204997 - MGP_C3HHeJ_P0045021 protein_coding protein_coding MGP_C3HHeJ_T0045022.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96115532 96167010 - MGP_C3HHeJ_P0045022 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045023.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96116336 96121853 - protein_coding retained_intron MGP_C3HHeJ_T0045024.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96116694 96123248 - protein_coding processed_transcript MGP_C3HHeJ_T0045025.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96117087 96123155 - protein_coding retained_intron MGP_C3HHeJ_T0045026.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96130168 96131866 - protein_coding retained_intron MGP_C3HHeJ_T0045027.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96133470 96133923 - protein_coding retained_intron MGP_C3HHeJ_T0045028.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96152905 96155491 - protein_coding retained_intron MGP_C3HHeJ_T0045029.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96155722 96180988 - MGP_C3HHeJ_P0045029 protein_coding protein_coding MGP_C3HHeJ_T0045030.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96155846 96180953 - MGP_C3HHeJ_P0045030 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045031.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96166071 96167293 - protein_coding retained_intron MGP_C3HHeJ_T0045032.1 MGP_C3HHeJ_G0022810.1 mouse_genomes_project 16 96186551 96205076 - MGP_C3HHeJ_P0045032 protein_coding protein_coding MGP_C3HHeJ_T0100310.1 MGP_C3HHeJ_G0038504.1 mouse_genomes_project 16 54625220 54625355 - Gm22422 snoRNA snoRNA MGP_C3HHeJ_T0010079.1 MGP_C3HHeJ_G0008212.1 mouse_genomes_project 16 93059513 93059581 + Gm28003 miRNA miRNA MGP_C3HHeJ_T0043233.1 MGP_C3HHeJ_G0022334.1 mouse_genomes_project 16 15233450 15265732 - MGP_C3HHeJ_P0043233 Prodh protein_coding protein_coding MGP_C3HHeJ_T0043239.1 MGP_C3HHeJ_G0022334.1 mouse_genomes_project 16 15248318 15265726 - MGP_C3HHeJ_P0043239 Prodh protein_coding protein_coding MGP_C3HHeJ_T0043240.1 MGP_C3HHeJ_G0022334.1 mouse_genomes_project 16 15248722 15255837 - MGP_C3HHeJ_P0043240 Prodh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043241.1 MGP_C3HHeJ_G0022334.1 mouse_genomes_project 16 15248852 15256511 - MGP_C3HHeJ_P0043241 Prodh protein_coding protein_coding MGP_C3HHeJ_T0043242.1 MGP_C3HHeJ_G0022334.1 mouse_genomes_project 16 15257580 15258888 - Prodh protein_coding processed_transcript MGP_C3HHeJ_T0043243.1 MGP_C3HHeJ_G0022334.1 mouse_genomes_project 16 15260772 15265591 - MGP_C3HHeJ_P0043243 Prodh protein_coding protein_coding MGP_C3HHeJ_T0003591.1 MGP_C3HHeJ_G0003252.1 mouse_genomes_project 16 23578011 23581879 + Gm4524 antisense antisense MGP_C3HHeJ_T0044920.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93916992 93939872 + MGP_C3HHeJ_P0044920 Chaf1b protein_coding protein_coding MGP_C3HHeJ_T0044921.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93917015 93939834 + MGP_C3HHeJ_P0044921 Chaf1b protein_coding protein_coding MGP_C3HHeJ_T0044922.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93917022 93927378 + Chaf1b protein_coding retained_intron MGP_C3HHeJ_T0044923.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93917107 93918563 + MGP_C3HHeJ_P0044923 Chaf1b protein_coding protein_coding MGP_C3HHeJ_T0044924.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93917293 93920244 + MGP_C3HHeJ_P0044924 Chaf1b protein_coding protein_coding MGP_C3HHeJ_T0044925.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93919801 93925879 + Chaf1b protein_coding processed_transcript MGP_C3HHeJ_T0044926.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93925830 93933877 + Chaf1b protein_coding retained_intron MGP_C3HHeJ_T0044927.1 MGP_C3HHeJ_G0022796.1 mouse_genomes_project 16 93938440 93939867 + Chaf1b protein_coding retained_intron MGP_C3HHeJ_T0003610.1 MGP_C3HHeJ_G0003266.1 mouse_genomes_project 16 36974754 36975091 + antisense antisense MGP_C3HHeJ_T0043535.1 MGP_C3HHeJ_G0022399.1 mouse_genomes_project 16 19824264 19884892 - MGP_C3HHeJ_P0043535 Etv5 protein_coding protein_coding MGP_C3HHeJ_T0043536.1 MGP_C3HHeJ_G0022399.1 mouse_genomes_project 16 19825250 19844224 - MGP_C3HHeJ_P0043536 Etv5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043537.1 MGP_C3HHeJ_G0022399.1 mouse_genomes_project 16 19844258 19884789 - Etv5 protein_coding processed_transcript MGP_C3HHeJ_T0043538.1 MGP_C3HHeJ_G0022399.1 mouse_genomes_project 16 19856268 19884743 - MGP_C3HHeJ_P0043538 Etv5 protein_coding protein_coding MGP_C3HHeJ_T0010075.1 MGP_C3HHeJ_G0008208.1 mouse_genomes_project 16 84371806 84371871 + Mir155 miRNA miRNA MGP_C3HHeJ_T0044701.1 MGP_C3HHeJ_G0022740.1 mouse_genomes_project 16 88880256 88880856 - MGP_C3HHeJ_P0044701 Krtap6-5 protein_coding protein_coding MGP_C3HHeJ_T0011711.1 MGP_C3HHeJ_G0009838.1 mouse_genomes_project 16 97732721 97758519 + MGP_C3HHeJ_P0011711 Mx2 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011712.1 MGP_C3HHeJ_G0009838.1 mouse_genomes_project 16 97733491 97759080 + MGP_C3HHeJ_P0011712 Mx2 polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011713.1 MGP_C3HHeJ_G0009838.1 mouse_genomes_project 16 97733493 97759079 + MGP_C3HHeJ_P0011713 Mx2 polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0011714.1 MGP_C3HHeJ_G0009838.1 mouse_genomes_project 16 97748625 97750209 + Mx2 polymorphic_pseudogene processed_transcript MGP_C3HHeJ_T0011715.1 MGP_C3HHeJ_G0009838.1 mouse_genomes_project 16 97756591 97758698 + Mx2 polymorphic_pseudogene retained_intron MGP_C3HHeJ_T0045075.1 MGP_C3HHeJ_G0009838.1 mouse_genomes_project 16 97736056 97759089 + MGP_C3HHeJ_P0045075 Mx2 polymorphic_pseudogene unknown_likely_coding MGP_C3HHeJ_T0044260.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43745302 43777608 - MGP_C3HHeJ_P0044260 Cd200 protein_coding protein_coding MGP_C3HHeJ_T0044261.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43745350 43777430 - MGP_C3HHeJ_P0044261 Cd200 protein_coding protein_coding MGP_C3HHeJ_T0044262.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43746451 43777527 - Cd200 protein_coding processed_transcript MGP_C3HHeJ_T0044263.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43757045 43768316 - MGP_C3HHeJ_P0044263 Cd200 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044264.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43757045 43777468 - MGP_C3HHeJ_P0044264 Cd200 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044265.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43759398 43777578 - Cd200 protein_coding processed_transcript MGP_C3HHeJ_T0044266.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43759626 43777596 - Cd200 protein_coding processed_transcript MGP_C3HHeJ_T0044267.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43761737 43777572 - Cd200 protein_coding processed_transcript MGP_C3HHeJ_T0044268.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43767574 43777419 - Cd200 protein_coding retained_intron MGP_C3HHeJ_T0044269.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43768296 43777562 - Cd200 protein_coding processed_transcript MGP_C3HHeJ_T0044270.1 MGP_C3HHeJ_G0022581.1 mouse_genomes_project 16 43775762 43777573 - Cd200 protein_coding processed_transcript MGP_C3HHeJ_T0099024.1 MGP_C3HHeJ_G0037218.1 mouse_genomes_project 16 6989201 6989304 + Gm24667 snRNA snRNA MGP_C3HHeJ_T0042761.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5174447 5289590 + MGP_C3HHeJ_P0042761 Abat protein_coding protein_coding MGP_C3HHeJ_T0042762.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5174499 5271063 + MGP_C3HHeJ_P0042762 Abat protein_coding protein_coding MGP_C3HHeJ_T0042763.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5174501 5248801 + Abat protein_coding retained_intron MGP_C3HHeJ_T0042764.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5174503 5287592 + MGP_C3HHeJ_P0042764 Abat protein_coding protein_coding MGP_C3HHeJ_T0042765.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5239046 5273645 + MGP_C3HHeJ_P0042765 Abat protein_coding protein_coding MGP_C3HHeJ_T0042766.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5253230 5271063 + MGP_C3HHeJ_P0042766 Abat protein_coding protein_coding MGP_C3HHeJ_T0042767.1 MGP_C3HHeJ_G0022227.1 mouse_genomes_project 16 5280889 5286599 + Abat protein_coding processed_transcript MGP_C3HHeJ_T0100299.1 MGP_C3HHeJ_G0038493.1 mouse_genomes_project 16 36278270 36278403 + Gm25617 snoRNA snoRNA MGP_C3HHeJ_T0099028.1 MGP_C3HHeJ_G0037222.1 mouse_genomes_project 16 14309432 14309539 - Gm22129 snRNA snRNA MGP_C3HHeJ_T0042707.1 MGP_C3HHeJ_G0022208.1 mouse_genomes_project 16 1416473 1422817 - MGP_C3HHeJ_P0042707 Ubald1 protein_coding protein_coding MGP_C3HHeJ_T0042708.1 MGP_C3HHeJ_G0022208.1 mouse_genomes_project 16 1416483 1422316 - Ubald1 protein_coding retained_intron MGP_C3HHeJ_T0044271.1 MGP_C3HHeJ_G0022582.1 mouse_genomes_project 16 43780316 43822411 - Gm609 protein_coding processed_transcript MGP_C3HHeJ_T0044272.1 MGP_C3HHeJ_G0022582.1 mouse_genomes_project 16 43785454 43842368 - MGP_C3HHeJ_P0044272 Gm609 protein_coding protein_coding MGP_C3HHeJ_T0042684.1 MGP_C3HHeJ_G0022204.1 mouse_genomes_project 16 1249681 1258732 - MGP_C3HHeJ_P0042684 Nmral1 protein_coding protein_coding MGP_C3HHeJ_T0042685.1 MGP_C3HHeJ_G0022204.1 mouse_genomes_project 16 1250939 1258779 - MGP_C3HHeJ_P0042685 Nmral1 protein_coding protein_coding MGP_C3HHeJ_T0042686.1 MGP_C3HHeJ_G0022204.1 mouse_genomes_project 16 1250939 1258979 - MGP_C3HHeJ_P0042686 Nmral1 protein_coding protein_coding MGP_C3HHeJ_T0042687.1 MGP_C3HHeJ_G0022204.1 mouse_genomes_project 16 1251917 1258735 - MGP_C3HHeJ_P0042687 Nmral1 protein_coding protein_coding MGP_C3HHeJ_T0042688.1 MGP_C3HHeJ_G0022204.1 mouse_genomes_project 16 1254131 1258711 - Nmral1 protein_coding retained_intron MGP_C3HHeJ_T0042689.1 MGP_C3HHeJ_G0022204.1 mouse_genomes_project 16 1255447 1258727 - Nmral1 protein_coding retained_intron MGP_C3HHeJ_T0044315.1 MGP_C3HHeJ_G0022594.1 mouse_genomes_project 16 46643913 46655137 + MGP_C3HHeJ_P0044315 Dppa4 protein_coding protein_coding MGP_C3HHeJ_T0044316.1 MGP_C3HHeJ_G0022594.1 mouse_genomes_project 16 46643913 46655137 + MGP_C3HHeJ_P0044316 Dppa4 protein_coding protein_coding MGP_C3HHeJ_T0043516.1 MGP_C3HHeJ_G0022391.1 mouse_genomes_project 16 19036227 19083675 - MGP_C3HHeJ_P0043516 2510009E07Rik protein_coding protein_coding MGP_C3HHeJ_T0043706.1 MGP_C3HHeJ_G0022450.1 mouse_genomes_project 16 29012943 29029961 - MGP_C3HHeJ_P0043706 Ppp1r2 protein_coding protein_coding MGP_C3HHeJ_T0044372.1 MGP_C3HHeJ_G0022613.1 mouse_genomes_project 16 54549330 54557743 + MGP_C3HHeJ_P0044372 Rpl24 protein_coding protein_coding MGP_C3HHeJ_T0044373.1 MGP_C3HHeJ_G0022613.1 mouse_genomes_project 16 54549476 54557743 + Rpl24 protein_coding processed_transcript MGP_C3HHeJ_T0044374.1 MGP_C3HHeJ_G0022613.1 mouse_genomes_project 16 54549489 54557747 + MGP_C3HHeJ_P0044374 Rpl24 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044375.1 MGP_C3HHeJ_G0022613.1 mouse_genomes_project 16 54549602 54556083 + Rpl24 protein_coding retained_intron MGP_C3HHeJ_T0044376.1 MGP_C3HHeJ_G0022613.1 mouse_genomes_project 16 54556303 54557743 + Rpl24 protein_coding retained_intron MGP_C3HHeJ_T0044973.1 MGP_C3HHeJ_G0022803.1 mouse_genomes_project 16 94550115 94580358 - MGP_C3HHeJ_P0044973 Dscr3 protein_coding protein_coding MGP_C3HHeJ_T0044974.1 MGP_C3HHeJ_G0022803.1 mouse_genomes_project 16 94554393 94564227 - Dscr3 protein_coding processed_transcript MGP_C3HHeJ_T0044975.1 MGP_C3HHeJ_G0022803.1 mouse_genomes_project 16 94556473 94579960 - Dscr3 protein_coding retained_intron MGP_C3HHeJ_T0044976.1 MGP_C3HHeJ_G0022803.1 mouse_genomes_project 16 94563499 94579969 - Dscr3 protein_coding retained_intron MGP_C3HHeJ_T0044977.1 MGP_C3HHeJ_G0022803.1 mouse_genomes_project 16 94565193 94579945 - Dscr3 protein_coding retained_intron MGP_C3HHeJ_T0043340.1 MGP_C3HHeJ_G0022354.1 mouse_genomes_project 16 16063187 16192875 + MGP_C3HHeJ_P0043340 Gm28539 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013020.1 MGP_C3HHeJ_G0011124.1 mouse_genomes_project 16 33880658 33880931 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044076.1 MGP_C3HHeJ_G0022539.1 mouse_genomes_project 16 36372722 36423824 - MGP_C3HHeJ_P0044076 Nr1i2 protein_coding protein_coding MGP_C3HHeJ_T0099036.1 MGP_C3HHeJ_G0037230.1 mouse_genomes_project 16 20970608 20970679 + Gm23066 snRNA snRNA MGP_C3HHeJ_T0043615.1 MGP_C3HHeJ_G0022423.1 mouse_genomes_project 16 23580824 23732314 - MGP_C3HHeJ_P0043615 P3h2 protein_coding protein_coding MGP_C3HHeJ_T0043616.1 MGP_C3HHeJ_G0022423.1 mouse_genomes_project 16 23593818 23608055 - P3h2 protein_coding retained_intron MGP_C3HHeJ_T0043617.1 MGP_C3HHeJ_G0022423.1 mouse_genomes_project 16 23608384 23615672 - P3h2 protein_coding processed_transcript MGP_C3HHeJ_T0043618.1 MGP_C3HHeJ_G0022423.1 mouse_genomes_project 16 23620041 23637161 - P3h2 protein_coding processed_transcript MGP_C3HHeJ_T0098065.1 MGP_C3HHeJ_G0036277.1 mouse_genomes_project 16 60229754 60229872 - n-R5s37 rRNA rRNA MGP_C3HHeJ_T0043933.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33488799 33598801 + protein_coding retained_intron MGP_C3HHeJ_T0043934.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33489016 33614580 + MGP_C3HHeJ_P0043934 protein_coding protein_coding MGP_C3HHeJ_T0043935.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33489225 33614580 + MGP_C3HHeJ_P0043935 protein_coding protein_coding MGP_C3HHeJ_T0043936.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33608631 33609024 + protein_coding retained_intron MGP_C3HHeJ_T0043937.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33609121 33615058 + MGP_C3HHeJ_P0043937 protein_coding protein_coding MGP_C3HHeJ_T0043938.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33609971 33610817 + protein_coding retained_intron MGP_C3HHeJ_T0043939.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33611645 33613651 + MGP_C3HHeJ_P0043939 protein_coding protein_coding MGP_C3HHeJ_T0043940.1 MGP_C3HHeJ_G0022501.1 mouse_genomes_project 16 33612811 33613791 + protein_coding retained_intron MGP_C3HHeJ_T0043210.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14979930 15033597 - protein_coding retained_intron MGP_C3HHeJ_T0043211.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14980803 15033603 - MGP_C3HHeJ_P0043211 protein_coding protein_coding MGP_C3HHeJ_T0043212.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14980803 15033636 - MGP_C3HHeJ_P0043212 protein_coding protein_coding MGP_C3HHeJ_T0043213.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14980809 15033600 - MGP_C3HHeJ_P0043213 protein_coding protein_coding MGP_C3HHeJ_T0043214.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14981758 15033536 - MGP_C3HHeJ_P0043214 protein_coding protein_coding MGP_C3HHeJ_T0043215.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14989759 15033592 - protein_coding retained_intron MGP_C3HHeJ_T0043216.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 14997211 15036042 - protein_coding processed_transcript MGP_C3HHeJ_T0043217.1 MGP_C3HHeJ_G0022325.1 mouse_genomes_project 16 15034517 15036088 - protein_coding processed_transcript MGP_C3HHeJ_T0044669.1 MGP_C3HHeJ_G0022714.1 mouse_genomes_project 16 87695897 87852915 - MGP_C3HHeJ_P0044669 Grik1 protein_coding protein_coding MGP_C3HHeJ_T0044670.1 MGP_C3HHeJ_G0022714.1 mouse_genomes_project 16 87695897 87852915 - MGP_C3HHeJ_P0044670 Grik1 protein_coding protein_coding MGP_C3HHeJ_T0044671.1 MGP_C3HHeJ_G0022714.1 mouse_genomes_project 16 87695897 87848330 - MGP_C3HHeJ_P0044671 Grik1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044672.1 MGP_C3HHeJ_G0022714.1 mouse_genomes_project 16 87695897 87853531 - MGP_C3HHeJ_P0044672 Grik1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044673.1 MGP_C3HHeJ_G0022714.1 mouse_genomes_project 16 87713449 87852915 - MGP_C3HHeJ_P0044673 Grik1 protein_coding protein_coding MGP_C3HHeJ_T0098064.1 MGP_C3HHeJ_G0036276.1 mouse_genomes_project 16 46788053 46788172 - n-R5s36 rRNA rRNA MGP_C3HHeJ_T0042924.1 MGP_C3HHeJ_G0022268.1 mouse_genomes_project 16 10724325 10760504 + MGP_C3HHeJ_P0042924 Rrn3 protein_coding protein_coding MGP_C3HHeJ_T0043761.1 MGP_C3HHeJ_G0022461.1 mouse_genomes_project 16 29896959 29910254 + MGP_C3HHeJ_P0043761 Cep19 protein_coding protein_coding MGP_C3HHeJ_T0043762.1 MGP_C3HHeJ_G0022461.1 mouse_genomes_project 16 29897111 29910236 + MGP_C3HHeJ_P0043762 Cep19 protein_coding protein_coding MGP_C3HHeJ_T0043763.1 MGP_C3HHeJ_G0022461.1 mouse_genomes_project 16 29906267 29910240 + MGP_C3HHeJ_P0043763 Cep19 protein_coding protein_coding MGP_C3HHeJ_T0101149.1 MGP_C3HHeJ_G0039309.1 mouse_genomes_project 16 76189428 76213466 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101150.1 MGP_C3HHeJ_G0039309.1 mouse_genomes_project 16 76191216 76191585 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0043360.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17019970 17032000 + MGP_C3HHeJ_P0043360 B3gnt5 protein_coding protein_coding MGP_C3HHeJ_T0043361.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17019996 17032520 + MGP_C3HHeJ_P0043361 B3gnt5 protein_coding protein_coding MGP_C3HHeJ_T0043362.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17019996 17032230 + MGP_C3HHeJ_P0043362 B3gnt5 protein_coding protein_coding MGP_C3HHeJ_T0043363.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17020161 17025389 + B3gnt5 protein_coding processed_transcript MGP_C3HHeJ_T0043364.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17020348 17028605 + B3gnt5 protein_coding retained_intron MGP_C3HHeJ_T0043365.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17020349 17024118 + B3gnt5 protein_coding retained_intron MGP_C3HHeJ_T0043366.1 MGP_C3HHeJ_G0022364.1 mouse_genomes_project 16 17020816 17030391 + MGP_C3HHeJ_P0043366 B3gnt5 protein_coding protein_coding MGP_C3HHeJ_T0044087.1 MGP_C3HHeJ_G0022543.1 mouse_genomes_project 16 36494575 36508955 + MGP_C3HHeJ_P0044087 Popdc2 protein_coding protein_coding MGP_C3HHeJ_T0044088.1 MGP_C3HHeJ_G0022543.1 mouse_genomes_project 16 36494611 36508955 + MGP_C3HHeJ_P0044088 Popdc2 protein_coding protein_coding MGP_C3HHeJ_T0044089.1 MGP_C3HHeJ_G0022543.1 mouse_genomes_project 16 36499532 36504933 + Popdc2 protein_coding processed_transcript MGP_C3HHeJ_T0044090.1 MGP_C3HHeJ_G0022543.1 mouse_genomes_project 16 36500139 36508502 + Popdc2 protein_coding processed_transcript MGP_C3HHeJ_T0044091.1 MGP_C3HHeJ_G0022543.1 mouse_genomes_project 16 36502711 36504876 + Popdc2 protein_coding processed_transcript MGP_C3HHeJ_T0003601.1 MGP_C3HHeJ_G0003259.1 mouse_genomes_project 16 31866356 31867430 + Gm15829 antisense antisense MGP_C3HHeJ_T0044987.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338630 95383631 + MGP_C3HHeJ_P0044987 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044988.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338630 95383043 + MGP_C3HHeJ_P0044988 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044989.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338630 95383631 + MGP_C3HHeJ_P0044989 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044990.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338630 95383631 + MGP_C3HHeJ_P0044990 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044991.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338630 95381927 + MGP_C3HHeJ_P0044991 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044992.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338723 95383680 + MGP_C3HHeJ_P0044992 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044993.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338731 95379142 + MGP_C3HHeJ_P0044993 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044994.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338731 95379477 + MGP_C3HHeJ_P0044994 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044995.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338755 95379119 + MGP_C3HHeJ_P0044995 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044996.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338822 95383631 + MGP_C3HHeJ_P0044996 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044997.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95338977 95374553 + Kcnj15 protein_coding processed_transcript MGP_C3HHeJ_T0044998.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95339038 95383631 + MGP_C3HHeJ_P0044998 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044999.1 MGP_C3HHeJ_G0022806.1 mouse_genomes_project 16 95361013 95374616 + MGP_C3HHeJ_P0044999 Kcnj15 protein_coding protein_coding MGP_C3HHeJ_T0044302.1 MGP_C3HHeJ_G0022590.1 mouse_genomes_project 16 44319993 44376267 - MGP_C3HHeJ_P0044302 Plcxd2 protein_coding protein_coding MGP_C3HHeJ_T0017266.1 MGP_C3HHeJ_G0015075.1 mouse_genomes_project 16 15607454 15612600 + Gm15764 processed_transcript antisense MGP_C3HHeJ_T0017267.1 MGP_C3HHeJ_G0015075.1 mouse_genomes_project 16 15607657 15611969 + Gm15764 processed_transcript retained_intron MGP_C3HHeJ_T0044894.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92571898 92804254 - MGP_C3HHeJ_P0044894 Runx1 protein_coding protein_coding MGP_C3HHeJ_T0044895.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92574106 92669830 - MGP_C3HHeJ_P0044895 Runx1 protein_coding protein_coding MGP_C3HHeJ_T0044896.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92575855 92668627 - MGP_C3HHeJ_P0044896 Runx1 protein_coding protein_coding MGP_C3HHeJ_T0044897.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92659464 92667997 - MGP_C3HHeJ_P0044897 Runx1 protein_coding protein_coding MGP_C3HHeJ_T0044898.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92659497 92669827 - Runx1 protein_coding retained_intron MGP_C3HHeJ_T0044899.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92668093 92803883 - MGP_C3HHeJ_P0044899 Runx1 protein_coding protein_coding MGP_C3HHeJ_T0044900.1 MGP_C3HHeJ_G0022790.1 mouse_genomes_project 16 92793532 92804179 - MGP_C3HHeJ_P0044900 Runx1 protein_coding protein_coding MGP_C3HHeJ_T0042580.1 MGP_C3HHeJ_G0022183.1 mouse_genomes_project 16 335080 336019 + MGP_C3HHeJ_P0042580 Olfr15 protein_coding protein_coding MGP_C3HHeJ_T0042981.1 MGP_C3HHeJ_G0022280.1 mouse_genomes_project 16 11547445 11602276 + MGP_C3HHeJ_P0042981 A630010A05Rik protein_coding protein_coding MGP_C3HHeJ_T0042982.1 MGP_C3HHeJ_G0022280.1 mouse_genomes_project 16 11562828 11602298 + MGP_C3HHeJ_P0042982 A630010A05Rik protein_coding protein_coding MGP_C3HHeJ_T0042983.1 MGP_C3HHeJ_G0022280.1 mouse_genomes_project 16 11569422 11602284 + MGP_C3HHeJ_P0042983 A630010A05Rik protein_coding protein_coding MGP_C3HHeJ_T0044803.1 MGP_C3HHeJ_G0022774.1 mouse_genomes_project 16 91510696 91533654 - MGP_C3HHeJ_P0044803 Tmem50b protein_coding protein_coding MGP_C3HHeJ_T0044804.1 MGP_C3HHeJ_G0022774.1 mouse_genomes_project 16 91511951 91533518 - MGP_C3HHeJ_P0044804 Tmem50b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044805.1 MGP_C3HHeJ_G0022774.1 mouse_genomes_project 16 91516395 91533654 - MGP_C3HHeJ_P0044805 Tmem50b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044485.1 MGP_C3HHeJ_G0022647.1 mouse_genomes_project 16 57695612 57699582 - MGP_C3HHeJ_P0044485 Olfr187 protein_coding protein_coding MGP_C3HHeJ_T0044486.1 MGP_C3HHeJ_G0022647.1 mouse_genomes_project 16 57695612 57696590 - MGP_C3HHeJ_P0044486 Olfr187 protein_coding protein_coding MGP_C3HHeJ_T0044487.1 MGP_C3HHeJ_G0022647.1 mouse_genomes_project 16 57696137 57699600 - MGP_C3HHeJ_P0044487 Olfr187 protein_coding protein_coding MGP_C3HHeJ_T0003584.1 MGP_C3HHeJ_G0003245.1 mouse_genomes_project 16 11295012 11297199 + Gm15868 antisense antisense MGP_C3HHeJ_T0043700.1 MGP_C3HHeJ_G0022448.1 mouse_genomes_project 16 28704896 28835975 - MGP_C3HHeJ_P0043700 Xxylt1 protein_coding protein_coding MGP_C3HHeJ_T0043701.1 MGP_C3HHeJ_G0022448.1 mouse_genomes_project 16 28706730 28816222 - Xxylt1 protein_coding processed_transcript MGP_C3HHeJ_T0043702.1 MGP_C3HHeJ_G0022448.1 mouse_genomes_project 16 28761442 28824651 - Xxylt1 protein_coding processed_transcript MGP_C3HHeJ_T0043703.1 MGP_C3HHeJ_G0022448.1 mouse_genomes_project 16 28761484 28822678 - Xxylt1 protein_coding processed_transcript MGP_C3HHeJ_T0012980.1 MGP_C3HHeJ_G0011084.1 mouse_genomes_project 16 5291207 5291742 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044318.1 MGP_C3HHeJ_G0022596.1 mouse_genomes_project 16 47117970 47157582 - MGP_C3HHeJ_P0044318 Trat1 protein_coding protein_coding MGP_C3HHeJ_T0100286.1 MGP_C3HHeJ_G0038480.1 mouse_genomes_project 16 17981751 17981826 + Snord66 snoRNA snoRNA MGP_C3HHeJ_T0042834.1 MGP_C3HHeJ_G0022244.1 mouse_genomes_project 16 7598992 7600722 - MGP_C3HHeJ_P0042834 Socs1 protein_coding protein_coding MGP_C3HHeJ_T0099043.1 MGP_C3HHeJ_G0037237.1 mouse_genomes_project 16 34219758 34219862 - Gm25465 snRNA snRNA MGP_C3HHeJ_T0043375.1 MGP_C3HHeJ_G0022369.1 mouse_genomes_project 16 17504618 17512667 - MGP_C3HHeJ_P0043375 Map6d1 protein_coding protein_coding MGP_C3HHeJ_T0099031.1 MGP_C3HHeJ_G0037225.1 mouse_genomes_project 16 15541594 15541742 + Gm26170 snRNA snRNA MGP_C3HHeJ_T0006766.1 MGP_C3HHeJ_G0005575.1 mouse_genomes_project 16 41631441 41649221 - Gm9968 lincRNA lincRNA MGP_C3HHeJ_T0100287.1 MGP_C3HHeJ_G0038481.1 mouse_genomes_project 16 20639469 20639538 + Snord2 snoRNA snoRNA MGP_C3HHeJ_T0043632.1 MGP_C3HHeJ_G0022429.1 mouse_genomes_project 16 24956856 25011976 + MGP_C3HHeJ_P0043632 Ostn protein_coding protein_coding MGP_C3HHeJ_T0000927.1 MGP_C3HHeJ_G0000866.1 mouse_genomes_project 16 56558031 56558441 + TEC TEC MGP_C3HHeJ_T0043943.1 MGP_C3HHeJ_G0022503.1 mouse_genomes_project 16 33724466 33784459 + MGP_C3HHeJ_P0043943 Hspbap1 protein_coding protein_coding MGP_C3HHeJ_T0042624.1 MGP_C3HHeJ_G0022192.1 mouse_genomes_project 16 517488 517855 - MGP_C3HHeJ_P0042624 Gm10076 protein_coding protein_coding MGP_C3HHeJ_T0044539.1 MGP_C3HHeJ_G0022675.1 mouse_genomes_project 16 63916641 64083121 - MGP_C3HHeJ_P0044539 Htr1f protein_coding protein_coding MGP_C3HHeJ_T0006758.1 MGP_C3HHeJ_G0005567.1 mouse_genomes_project 16 27603095 27643170 - Gm26569 lincRNA lincRNA MGP_C3HHeJ_T0044052.1 MGP_C3HHeJ_G0022531.1 mouse_genomes_project 16 35639692 35671846 + MGP_C3HHeJ_P0044052 Rabl3 protein_coding protein_coding MGP_C3HHeJ_T0044053.1 MGP_C3HHeJ_G0022531.1 mouse_genomes_project 16 35639707 35671843 + MGP_C3HHeJ_P0044053 Rabl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044054.1 MGP_C3HHeJ_G0022531.1 mouse_genomes_project 16 35639712 35663538 + Rabl3 protein_coding retained_intron MGP_C3HHeJ_T0044055.1 MGP_C3HHeJ_G0022531.1 mouse_genomes_project 16 35663223 35667425 + Rabl3 protein_coding retained_intron MGP_C3HHeJ_T0043276.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15534160 15598082 + MGP_C3HHeJ_P0043276 Arvcf protein_coding protein_coding MGP_C3HHeJ_T0043277.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15534252 15598078 + MGP_C3HHeJ_P0043277 Arvcf protein_coding protein_coding MGP_C3HHeJ_T0043278.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15534252 15598082 + MGP_C3HHeJ_P0043278 Arvcf protein_coding protein_coding MGP_C3HHeJ_T0043279.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15569072 15597753 + MGP_C3HHeJ_P0043279 Arvcf protein_coding protein_coding MGP_C3HHeJ_T0043280.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15581938 15598082 + MGP_C3HHeJ_P0043280 Arvcf protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043281.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15581939 15597262 + MGP_C3HHeJ_P0043281 Arvcf protein_coding protein_coding MGP_C3HHeJ_T0043282.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15587846 15590012 + Arvcf protein_coding processed_transcript MGP_C3HHeJ_T0043283.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15590095 15591646 + Arvcf protein_coding retained_intron MGP_C3HHeJ_T0043284.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15592137 15594437 + Arvcf protein_coding processed_transcript MGP_C3HHeJ_T0043285.1 MGP_C3HHeJ_G0022342.1 mouse_genomes_project 16 15594454 15595464 + Arvcf protein_coding retained_intron MGP_C3HHeJ_T0097870.1 MGP_C3HHeJ_G0036082.1 mouse_genomes_project 16 57716486 57717340 - pseudogene pseudogene MGP_C3HHeJ_T0044909.1 MGP_C3HHeJ_G0022792.1 mouse_genomes_project 16 93614162 93616833 + MGP_C3HHeJ_P0044909 Cbr1 protein_coding protein_coding MGP_C3HHeJ_T0017305.1 MGP_C3HHeJ_G0015091.1 mouse_genomes_project 16 91548983 91561372 + Gm15964 processed_transcript processed_transcript MGP_C3HHeJ_T0042805.1 MGP_C3HHeJ_G0022238.1 mouse_genomes_project 16 7156275 7197671 - MGP_C3HHeJ_P0042805 Tekt5 protein_coding protein_coding MGP_C3HHeJ_T0042806.1 MGP_C3HHeJ_G0022238.1 mouse_genomes_project 16 7160718 7197629 - MGP_C3HHeJ_P0042806 Tekt5 protein_coding protein_coding MGP_C3HHeJ_T0003624.1 MGP_C3HHeJ_G0003277.1 mouse_genomes_project 16 92265612 92269365 - 1700048M11Rik antisense antisense MGP_C3HHeJ_T0017274.1 MGP_C3HHeJ_G0015080.1 mouse_genomes_project 16 30821732 30955653 - Gm17106 processed_transcript processed_transcript MGP_C3HHeJ_T0006773.1 MGP_C3HHeJ_G0005581.1 mouse_genomes_project 16 49130882 49144541 - Dubr lincRNA lincRNA MGP_C3HHeJ_T0006774.1 MGP_C3HHeJ_G0005581.1 mouse_genomes_project 16 49130887 49144451 - Dubr lincRNA lincRNA MGP_C3HHeJ_T0006775.1 MGP_C3HHeJ_G0005581.1 mouse_genomes_project 16 49138513 49144505 - Dubr lincRNA lincRNA MGP_C3HHeJ_T0006776.1 MGP_C3HHeJ_G0005581.1 mouse_genomes_project 16 49139204 49144456 - Dubr lincRNA lincRNA MGP_C3HHeJ_T0042823.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348775 7557750 + MGP_C3HHeJ_P0042823 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042824.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348775 7557750 + MGP_C3HHeJ_P0042824 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042825.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348800 7557750 + MGP_C3HHeJ_P0042825 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042826.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348813 7368580 + Clec16a protein_coding processed_transcript MGP_C3HHeJ_T0042827.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348834 7533724 + MGP_C3HHeJ_P0042827 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042828.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348845 7554679 + MGP_C3HHeJ_P0042828 Clec16a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042829.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348845 7363180 + MGP_C3HHeJ_P0042829 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042830.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7348845 7503980 + MGP_C3HHeJ_P0042830 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042831.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7406713 7555320 + MGP_C3HHeJ_P0042831 Clec16a protein_coding protein_coding MGP_C3HHeJ_T0042832.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7416834 7437998 + Clec16a protein_coding processed_transcript MGP_C3HHeJ_T0042833.1 MGP_C3HHeJ_G0022243.1 mouse_genomes_project 16 7437252 7446775 + Clec16a protein_coding processed_transcript MGP_C3HHeJ_T0044388.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54639999 54669599 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0044389.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668557 54670303 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0044390.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668562 54784799 + MGP_C3HHeJ_P0044390 Senp7 protein_coding protein_coding MGP_C3HHeJ_T0044391.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668562 54718453 + MGP_C3HHeJ_P0044391 Senp7 protein_coding protein_coding MGP_C3HHeJ_T0044392.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668617 54718448 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0044393.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668621 54784800 + MGP_C3HHeJ_P0044393 Senp7 protein_coding protein_coding MGP_C3HHeJ_T0044394.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668628 54693010 + Senp7 protein_coding retained_intron MGP_C3HHeJ_T0044395.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668628 54730592 + MGP_C3HHeJ_P0044395 Senp7 protein_coding protein_coding MGP_C3HHeJ_T0044396.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668633 54718329 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0044397.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54668633 54733446 + MGP_C3HHeJ_P0044397 Senp7 protein_coding protein_coding MGP_C3HHeJ_T0044398.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54774796 54783518 + Senp7 protein_coding retained_intron MGP_C3HHeJ_T0044399.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54775270 54783127 + Senp7 protein_coding retained_intron MGP_C3HHeJ_T0044400.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54777255 54784772 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0044401.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54778432 54783032 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0044402.1 MGP_C3HHeJ_G0022617.1 mouse_genomes_project 16 54780916 54783507 + Senp7 protein_coding processed_transcript MGP_C3HHeJ_T0013025.1 MGP_C3HHeJ_G0011129.1 mouse_genomes_project 16 36828957 36829512 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098061.1 MGP_C3HHeJ_G0036273.1 mouse_genomes_project 16 30837723 30837842 + n-R5s33 rRNA rRNA MGP_C3HHeJ_T0045009.1 MGP_C3HHeJ_G0022808.1 mouse_genomes_project 16 95805461 95825532 + MGP_C3HHeJ_P0045009 Ets2 protein_coding protein_coding MGP_C3HHeJ_T0045010.1 MGP_C3HHeJ_G0022808.1 mouse_genomes_project 16 95805841 95814900 + Ets2 protein_coding retained_intron MGP_C3HHeJ_T0045011.1 MGP_C3HHeJ_G0022808.1 mouse_genomes_project 16 95805886 95817301 + Ets2 protein_coding retained_intron MGP_C3HHeJ_T0045012.1 MGP_C3HHeJ_G0022808.1 mouse_genomes_project 16 95810898 95820553 + MGP_C3HHeJ_P0045012 Ets2 protein_coding protein_coding MGP_C3HHeJ_T0045013.1 MGP_C3HHeJ_G0022808.1 mouse_genomes_project 16 95820334 95823603 + Ets2 protein_coding retained_intron MGP_C3HHeJ_T0100318.1 MGP_C3HHeJ_G0038512.1 mouse_genomes_project 16 73914375 73914521 + Gm26307 snoRNA snoRNA MGP_C3HHeJ_T0044735.1 MGP_C3HHeJ_G0022757.1 mouse_genomes_project 16 90243084 90365883 + MGP_C3HHeJ_P0044735 Hunk protein_coding protein_coding MGP_C3HHeJ_T0043218.1 MGP_C3HHeJ_G0022326.1 mouse_genomes_project 16 15036165 15039865 + MGP_C3HHeJ_P0043218 Tssk1 protein_coding protein_coding MGP_C3HHeJ_T0043405.1 MGP_C3HHeJ_G0022374.1 mouse_genomes_project 16 17799025 17813355 + MGP_C3HHeJ_P0043405 Dvl3 protein_coding protein_coding MGP_C3HHeJ_T0043406.1 MGP_C3HHeJ_G0022374.1 mouse_genomes_project 16 17799107 17814225 + MGP_C3HHeJ_P0043406 Dvl3 protein_coding protein_coding MGP_C3HHeJ_T0043407.1 MGP_C3HHeJ_G0022374.1 mouse_genomes_project 16 17799149 17813351 + MGP_C3HHeJ_P0043407 Dvl3 protein_coding protein_coding MGP_C3HHeJ_T0043408.1 MGP_C3HHeJ_G0022374.1 mouse_genomes_project 16 17799229 17807024 + Dvl3 protein_coding retained_intron MGP_C3HHeJ_T0006803.1 MGP_C3HHeJ_G0005599.1 mouse_genomes_project 16 96002391 96003722 + Gm15340 lincRNA lincRNA MGP_C3HHeJ_T0044461.1 MGP_C3HHeJ_G0022637.1 mouse_genomes_project 16 57394702 57401045 + MGP_C3HHeJ_P0044461 Cldnd1 protein_coding protein_coding MGP_C3HHeJ_T0044462.1 MGP_C3HHeJ_G0022637.1 mouse_genomes_project 16 57394717 57400401 + MGP_C3HHeJ_P0044462 Cldnd1 protein_coding protein_coding MGP_C3HHeJ_T0044463.1 MGP_C3HHeJ_G0022637.1 mouse_genomes_project 16 57394815 57399782 + MGP_C3HHeJ_P0044463 Cldnd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044464.1 MGP_C3HHeJ_G0022637.1 mouse_genomes_project 16 57394831 57399701 + Cldnd1 protein_coding processed_transcript MGP_C3HHeJ_T0044465.1 MGP_C3HHeJ_G0022637.1 mouse_genomes_project 16 57394840 57398172 + MGP_C3HHeJ_P0044465 Cldnd1 protein_coding protein_coding MGP_C3HHeJ_T0044466.1 MGP_C3HHeJ_G0022637.1 mouse_genomes_project 16 57399056 57399773 + Cldnd1 protein_coding retained_intron MGP_C3HHeJ_T0044800.1 MGP_C3HHeJ_G0022773.1 mouse_genomes_project 16 91478360 91500622 + MGP_C3HHeJ_P0044800 Ifngr2 protein_coding protein_coding MGP_C3HHeJ_T0044801.1 MGP_C3HHeJ_G0022773.1 mouse_genomes_project 16 91478435 91496100 + MGP_C3HHeJ_P0044801 Ifngr2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044802.1 MGP_C3HHeJ_G0022773.1 mouse_genomes_project 16 91496775 91500622 + Ifngr2 protein_coding processed_transcript MGP_C3HHeJ_T0003579.1 MGP_C3HHeJ_G0003241.1 mouse_genomes_project 16 7475740 7490991 - Gm15558 antisense antisense MGP_C3HHeJ_T0043482.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18000460 18013613 - MGP_C3HHeJ_P0043482 Clcn2 protein_coding protein_coding MGP_C3HHeJ_T0043483.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18000484 18013610 - Clcn2 protein_coding retained_intron MGP_C3HHeJ_T0043484.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18000494 18013660 - Clcn2 protein_coding retained_intron MGP_C3HHeJ_T0043485.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18000719 18013607 - MGP_C3HHeJ_P0043485 Clcn2 protein_coding protein_coding MGP_C3HHeJ_T0043486.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18003034 18015660 - MGP_C3HHeJ_P0043486 Clcn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043487.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18004670 18006622 - Clcn2 protein_coding retained_intron MGP_C3HHeJ_T0043488.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18005202 18006231 - Clcn2 protein_coding retained_intron MGP_C3HHeJ_T0043489.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18007586 18009461 - Clcn2 protein_coding retained_intron MGP_C3HHeJ_T0043490.1 MGP_C3HHeJ_G0022384.1 mouse_genomes_project 16 18009806 18011164 - Clcn2 protein_coding retained_intron MGP_C3HHeJ_T0000131.1 MGP_C3HHeJ_G0000101.1 mouse_genomes_project 16 16495836 16496320 - MGP_C3HHeJ_P0000131 Iglv3 IG_V_gene IG_V_gene MGP_C3HHeJ_T0097872.1 MGP_C3HHeJ_G0036084.1 mouse_genomes_project 16 88586071 88586701 + pseudogene pseudogene MGP_C3HHeJ_T0043522.1 MGP_C3HHeJ_G0022396.1 mouse_genomes_project 16 19414858 19459831 + MGP_C3HHeJ_P0043522 Senp2 protein_coding protein_coding MGP_C3HHeJ_T0044607.1 MGP_C3HHeJ_G0022698.1 mouse_genomes_project 16 80693288 81124129 + MGP_C3HHeJ_P0044607 Ncam2 protein_coding protein_coding MGP_C3HHeJ_T0044608.1 MGP_C3HHeJ_G0022698.1 mouse_genomes_project 16 80693288 81152137 + MGP_C3HHeJ_P0044608 Ncam2 protein_coding protein_coding MGP_C3HHeJ_T0044284.1 MGP_C3HHeJ_G0022587.1 mouse_genomes_project 16 44068432 44081793 - MGP_C3HHeJ_P0044284 Tagln3 protein_coding protein_coding MGP_C3HHeJ_T0012983.1 MGP_C3HHeJ_G0011087.1 mouse_genomes_project 16 8025793 8026760 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101151.1 MGP_C3HHeJ_G0039310.1 mouse_genomes_project 16 94408871 94409228 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0099030.1 MGP_C3HHeJ_G0037224.1 mouse_genomes_project 16 14607787 14607854 - Gm22770 snRNA snRNA MGP_C3HHeJ_T0100306.1 MGP_C3HHeJ_G0038500.1 mouse_genomes_project 16 51444340 51444466 - Gm25723 snoRNA snoRNA MGP_C3HHeJ_T0013010.1 MGP_C3HHeJ_G0011114.1 mouse_genomes_project 16 21274443 21276030 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011321.1 MGP_C3HHeJ_G0009454.1 mouse_genomes_project 16 84269781 84270103 - Gm25292 misc_RNA misc_RNA MGP_C3HHeJ_T0043219.1 MGP_C3HHeJ_G0022327.1 mouse_genomes_project 16 15040579 15041966 + MGP_C3HHeJ_P0043219 Tssk2 protein_coding protein_coding MGP_C3HHeJ_T0044377.1 MGP_C3HHeJ_G0022614.1 mouse_genomes_project 16 54561024 54598418 + MGP_C3HHeJ_P0044377 Zbtb11 protein_coding protein_coding MGP_C3HHeJ_T0044378.1 MGP_C3HHeJ_G0022614.1 mouse_genomes_project 16 54576098 54579243 + Zbtb11 protein_coding retained_intron MGP_C3HHeJ_T0044379.1 MGP_C3HHeJ_G0022614.1 mouse_genomes_project 16 54594696 54598418 + Zbtb11 protein_coding retained_intron MGP_C3HHeJ_T0045014.1 MGP_C3HHeJ_G0022809.1 mouse_genomes_project 16 96088380 96102402 - MGP_C3HHeJ_P0045014 Psmg1 protein_coding protein_coding MGP_C3HHeJ_T0045015.1 MGP_C3HHeJ_G0022809.1 mouse_genomes_project 16 96088484 96102332 - MGP_C3HHeJ_P0045015 Psmg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045016.1 MGP_C3HHeJ_G0022809.1 mouse_genomes_project 16 96088484 96102332 - MGP_C3HHeJ_P0045016 Psmg1 protein_coding protein_coding MGP_C3HHeJ_T0045017.1 MGP_C3HHeJ_G0022809.1 mouse_genomes_project 16 96099427 96101340 - Psmg1 protein_coding retained_intron MGP_C3HHeJ_T0043883.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31569793 31608945 + Heg1 protein_coding retained_intron MGP_C3HHeJ_T0043884.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31569793 31658968 + MGP_C3HHeJ_P0043884 Heg1 protein_coding protein_coding MGP_C3HHeJ_T0043885.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31569872 31656835 + MGP_C3HHeJ_P0043885 Heg1 protein_coding protein_coding MGP_C3HHeJ_T0043886.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31569939 31658949 + MGP_C3HHeJ_P0043886 Heg1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043887.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31618429 31627107 + Heg1 protein_coding processed_transcript MGP_C3HHeJ_T0043888.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31639941 31648401 + Heg1 protein_coding retained_intron MGP_C3HHeJ_T0043889.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31642317 31656225 + Heg1 protein_coding processed_transcript MGP_C3HHeJ_T0043890.1 MGP_C3HHeJ_G0022489.1 mouse_genomes_project 16 31643290 31648247 + Heg1 protein_coding retained_intron MGP_C3HHeJ_T0006780.1 MGP_C3HHeJ_G0005584.1 mouse_genomes_project 16 55797967 55807397 + Gm16892 lincRNA lincRNA MGP_C3HHeJ_T0044489.1 MGP_C3HHeJ_G0022649.1 mouse_genomes_project 16 57800797 57804390 - MGP_C3HHeJ_P0044489 Olfr193 protein_coding protein_coding MGP_C3HHeJ_T0044674.1 MGP_C3HHeJ_G0022715.1 mouse_genomes_project 16 88319483 88320655 - MGP_C3HHeJ_P0044674 Cldn17 protein_coding protein_coding MGP_C3HHeJ_T0043197.1 MGP_C3HHeJ_G0022320.1 mouse_genomes_project 16 14781784 14855400 - MGP_C3HHeJ_P0043197 Med15 protein_coding protein_coding MGP_C3HHeJ_T0043198.1 MGP_C3HHeJ_G0022320.1 mouse_genomes_project 16 14781784 14855400 - MGP_C3HHeJ_P0043198 Med15 protein_coding protein_coding MGP_C3HHeJ_T0045070.1 MGP_C3HHeJ_G0022821.1 mouse_genomes_project 16 97638154 97654201 - MGP_C3HHeJ_P0045070 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045071.1 MGP_C3HHeJ_G0022821.1 mouse_genomes_project 16 97638156 97654200 - MGP_C3HHeJ_P0045071 protein_coding protein_coding MGP_C3HHeJ_T0045072.1 MGP_C3HHeJ_G0022821.1 mouse_genomes_project 16 97638156 97654199 - MGP_C3HHeJ_P0045072 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100285.1 MGP_C3HHeJ_G0038479.1 mouse_genomes_project 16 16657984 16658116 + Gm25762 snoRNA snoRNA MGP_C3HHeJ_T0044319.1 MGP_C3HHeJ_G0022597.1 mouse_genomes_project 16 47207676 47209696 + MGP_C3HHeJ_P0044319 Retnlb protein_coding protein_coding MGP_C3HHeJ_T0000938.1 MGP_C3HHeJ_G0000876.1 mouse_genomes_project 16 76925324 76927648 + TEC TEC MGP_C3HHeJ_T0013036.1 MGP_C3HHeJ_G0011140.1 mouse_genomes_project 16 43887412 43888778 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017314.1 MGP_C3HHeJ_G0015095.1 mouse_genomes_project 16 96155950 96158604 + Gm15342 processed_transcript processed_transcript MGP_C3HHeJ_T0013002.1 MGP_C3HHeJ_G0011106.1 mouse_genomes_project 16 16930046 16930553 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010023.1 MGP_C3HHeJ_G0008156.1 mouse_genomes_project 16 5291184 5291292 - Gm26445 miRNA miRNA MGP_C3HHeJ_T0042711.1 MGP_C3HHeJ_G0022210.1 mouse_genomes_project 16 1484983 1486893 + MGP_C3HHeJ_P0042711 Nudt16l1 protein_coding protein_coding MGP_C3HHeJ_T0003577.1 MGP_C3HHeJ_G0003239.1 mouse_genomes_project 16 1270162 1271037 + Gm15859 antisense antisense MGP_C3HHeJ_T0003606.1 MGP_C3HHeJ_G0003262.1 mouse_genomes_project 16 34417722 34444769 + Gm15845 antisense antisense MGP_C3HHeJ_T0043052.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14047806 14116174 + MGP_C3HHeJ_P0043052 Mapk1 protein_coding protein_coding MGP_C3HHeJ_T0043053.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14047806 14113470 + MGP_C3HHeJ_P0043053 Mapk1 protein_coding protein_coding MGP_C3HHeJ_T0043054.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14047991 14107083 + MGP_C3HHeJ_P0043054 Mapk1 protein_coding protein_coding MGP_C3HHeJ_T0043055.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14084733 14090376 + Mapk1 protein_coding retained_intron MGP_C3HHeJ_T0043056.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14092346 14093515 + Mapk1 protein_coding retained_intron MGP_C3HHeJ_T0043057.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14092686 14112584 + MGP_C3HHeJ_P0043057 Mapk1 protein_coding protein_coding MGP_C3HHeJ_T0043058.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14103380 14106748 + Mapk1 protein_coding processed_transcript MGP_C3HHeJ_T0043059.1 MGP_C3HHeJ_G0022297.1 mouse_genomes_project 16 14103591 14112931 + Mapk1 protein_coding processed_transcript MGP_C3HHeJ_T0044562.1 MGP_C3HHeJ_G0022682.1 mouse_genomes_project 16 71902144 72306186 + MGP_C3HHeJ_P0044562 Robo1 protein_coding protein_coding MGP_C3HHeJ_T0043588.1 MGP_C3HHeJ_G0022413.1 mouse_genomes_project 16 20761126 20903987 + MGP_C3HHeJ_P0043588 St6gal1 protein_coding protein_coding MGP_C3HHeJ_T0043589.1 MGP_C3HHeJ_G0022413.1 mouse_genomes_project 16 20762407 20864644 + St6gal1 protein_coding processed_transcript MGP_C3HHeJ_T0043590.1 MGP_C3HHeJ_G0022413.1 mouse_genomes_project 16 20762407 20903989 + MGP_C3HHeJ_P0043590 St6gal1 protein_coding protein_coding MGP_C3HHeJ_T0043591.1 MGP_C3HHeJ_G0022413.1 mouse_genomes_project 16 20810613 20864752 + MGP_C3HHeJ_P0043591 St6gal1 protein_coding protein_coding MGP_C3HHeJ_T0043592.1 MGP_C3HHeJ_G0022413.1 mouse_genomes_project 16 20832737 20902234 + MGP_C3HHeJ_P0043592 St6gal1 protein_coding protein_coding MGP_C3HHeJ_T0043593.1 MGP_C3HHeJ_G0022413.1 mouse_genomes_project 16 20901954 20903987 + St6gal1 protein_coding processed_transcript MGP_C3HHeJ_T0042988.1 MGP_C3HHeJ_G0022284.1 mouse_genomes_project 16 12624560 12640176 - MGP_C3HHeJ_P0042988 Mcm4 protein_coding protein_coding MGP_C3HHeJ_T0044368.1 MGP_C3HHeJ_G0022612.1 mouse_genomes_project 16 54488318 54526406 - MGP_C3HHeJ_P0044368 Cep97 protein_coding protein_coding MGP_C3HHeJ_T0044369.1 MGP_C3HHeJ_G0022612.1 mouse_genomes_project 16 54512695 54526408 - MGP_C3HHeJ_P0044369 Cep97 protein_coding protein_coding MGP_C3HHeJ_T0044370.1 MGP_C3HHeJ_G0022612.1 mouse_genomes_project 16 54512702 54526465 - MGP_C3HHeJ_P0044370 Cep97 protein_coding protein_coding MGP_C3HHeJ_T0044371.1 MGP_C3HHeJ_G0022612.1 mouse_genomes_project 16 54512890 54526444 - MGP_C3HHeJ_P0044371 Cep97 protein_coding protein_coding MGP_C3HHeJ_T0003627.1 MGP_C3HHeJ_G0003280.1 mouse_genomes_project 16 96221027 96241999 + Gm15341 antisense antisense MGP_C3HHeJ_T0043126.1 MGP_C3HHeJ_G0022310.1 mouse_genomes_project 16 14520324 14548828 + MGP_C3HHeJ_P0043126 Snap29 protein_coding protein_coding MGP_C3HHeJ_T0044631.1 MGP_C3HHeJ_G0022703.1 mouse_genomes_project 16 84626583 84862447 - MGP_C3HHeJ_P0044631 App protein_coding protein_coding MGP_C3HHeJ_T0045069.1 MGP_C3HHeJ_G0022820.1 mouse_genomes_project 16 97548718 97630134 + MGP_C3HHeJ_P0045069 Bace2 protein_coding protein_coding MGP_C3HHeJ_T0044117.1 MGP_C3HHeJ_G0022550.1 mouse_genomes_project 16 36741380 36859702 - MGP_C3HHeJ_P0044117 Arhgap31 protein_coding protein_coding MGP_C3HHeJ_T0044118.1 MGP_C3HHeJ_G0022550.1 mouse_genomes_project 16 36765990 36859327 - Arhgap31 protein_coding processed_transcript MGP_C3HHeJ_T0044119.1 MGP_C3HHeJ_G0022550.1 mouse_genomes_project 16 36780136 36859326 - Arhgap31 protein_coding retained_intron MGP_C3HHeJ_T0044677.1 MGP_C3HHeJ_G0022718.1 mouse_genomes_project 16 88449799 88450680 - MGP_C3HHeJ_P0044677 2310079G19Rik protein_coding protein_coding MGP_C3HHeJ_T0013057.1 MGP_C3HHeJ_G0011161.1 mouse_genomes_project 16 90809225 90809777 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010058.1 MGP_C3HHeJ_G0008191.1 mouse_genomes_project 16 42316498 42316624 + Mir3470b miRNA miRNA MGP_C3HHeJ_T0045068.1 MGP_C3HHeJ_G0022819.1 mouse_genomes_project 16 96741934 97349112 - MGP_C3HHeJ_P0045068 Dscam protein_coding protein_coding MGP_C3HHeJ_T0043315.1 MGP_C3HHeJ_G0022346.1 mouse_genomes_project 16 15697550 15700308 + MGP_C3HHeJ_P0043315 Gm16314 protein_coding protein_coding MGP_C3HHeJ_T0044094.1 MGP_C3HHeJ_G0022546.1 mouse_genomes_project 16 36591617 36624344 + MGP_C3HHeJ_P0044094 Cd80 protein_coding protein_coding MGP_C3HHeJ_T0043974.1 MGP_C3HHeJ_G0022514.1 mouse_genomes_project 16 34250983 34302504 + MGP_C3HHeJ_P0043974 protein_coding protein_coding MGP_C3HHeJ_T0043975.1 MGP_C3HHeJ_G0022514.1 mouse_genomes_project 16 34251182 34302501 + MGP_C3HHeJ_P0043975 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003622.1 MGP_C3HHeJ_G0003275.1 mouse_genomes_project 16 90879783 90882938 + Gm15965 antisense antisense MGP_C3HHeJ_T0098379.1 MGP_C3HHeJ_G0036586.1 mouse_genomes_project 16 92046588 92048507 + Gm16310 sense_intronic sense_intronic MGP_C3HHeJ_T0044303.1 MGP_C3HHeJ_G0022591.1 mouse_genomes_project 16 44401101 44481057 - MGP_C3HHeJ_P0044303 Cd96 protein_coding protein_coding MGP_C3HHeJ_T0013054.1 MGP_C3HHeJ_G0011158.1 mouse_genomes_project 16 79369162 79369592 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003594.1 MGP_C3HHeJ_G0003254.1 mouse_genomes_project 16 29911049 29915924 + Gm15729 antisense antisense MGP_C3HHeJ_T0100279.1 MGP_C3HHeJ_G0038473.1 mouse_genomes_project 16 12875 13002 - Gm22598 snoRNA snoRNA MGP_C3HHeJ_T0044481.1 MGP_C3HHeJ_G0022645.1 mouse_genomes_project 16 57658220 57663452 + MGP_C3HHeJ_P0044481 Olfr183 protein_coding protein_coding MGP_C3HHeJ_T0044482.1 MGP_C3HHeJ_G0022645.1 mouse_genomes_project 16 57658239 57662988 + MGP_C3HHeJ_P0044482 Olfr183 protein_coding protein_coding MGP_C3HHeJ_T0043386.1 MGP_C3HHeJ_G0022371.1 mouse_genomes_project 16 17579157 17594152 - protein_coding processed_transcript MGP_C3HHeJ_T0043387.1 MGP_C3HHeJ_G0022371.1 mouse_genomes_project 16 17579157 17594209 - MGP_C3HHeJ_P0043387 protein_coding protein_coding MGP_C3HHeJ_T0043388.1 MGP_C3HHeJ_G0022371.1 mouse_genomes_project 16 17580440 17584981 - protein_coding processed_transcript MGP_C3HHeJ_T0043389.1 MGP_C3HHeJ_G0022371.1 mouse_genomes_project 16 17580546 17587521 - MGP_C3HHeJ_P0043389 protein_coding protein_coding MGP_C3HHeJ_T0043390.1 MGP_C3HHeJ_G0022371.1 mouse_genomes_project 16 17585790 17586822 - protein_coding processed_transcript MGP_C3HHeJ_T0043228.1 MGP_C3HHeJ_G0022331.1 mouse_genomes_project 16 15145052 15145365 + MGP_C3HHeJ_P0043228 protein_coding protein_coding MGP_C3HHeJ_T0044642.1 MGP_C3HHeJ_G0022709.1 mouse_genomes_project 16 87202759 87209913 - MGP_C3HHeJ_P0044642 Rwdd2b protein_coding protein_coding MGP_C3HHeJ_T0044643.1 MGP_C3HHeJ_G0022709.1 mouse_genomes_project 16 87206046 87209913 - Rwdd2b protein_coding processed_transcript MGP_C3HHeJ_T0044056.1 MGP_C3HHeJ_G0022532.1 mouse_genomes_project 16 35683272 35734288 + MGP_C3HHeJ_P0044056 Hgd protein_coding protein_coding MGP_C3HHeJ_T0044057.1 MGP_C3HHeJ_G0022532.1 mouse_genomes_project 16 35683369 35734288 + Hgd protein_coding processed_transcript MGP_C3HHeJ_T0044058.1 MGP_C3HHeJ_G0022532.1 mouse_genomes_project 16 35683373 35714476 + Hgd protein_coding retained_intron MGP_C3HHeJ_T0044059.1 MGP_C3HHeJ_G0022532.1 mouse_genomes_project 16 35683401 35718569 + Hgd protein_coding processed_transcript MGP_C3HHeJ_T0044060.1 MGP_C3HHeJ_G0022532.1 mouse_genomes_project 16 35724120 35734288 + Hgd protein_coding processed_transcript MGP_C3HHeJ_T0043493.1 MGP_C3HHeJ_G0022386.1 mouse_genomes_project 16 18023332 18028661 - MGP_C3HHeJ_P0043493 Thpo protein_coding protein_coding MGP_C3HHeJ_T0003613.1 MGP_C3HHeJ_G0003269.1 mouse_genomes_project 16 44297158 44300117 + Gm15640 antisense antisense MGP_C3HHeJ_T0043891.1 MGP_C3HHeJ_G0022490.1 mouse_genomes_project 16 31685016 31712386 + MGP_C3HHeJ_P0043891 Muc13 protein_coding protein_coding MGP_C3HHeJ_T0043892.1 MGP_C3HHeJ_G0022490.1 mouse_genomes_project 16 31685346 31712393 + MGP_C3HHeJ_P0043892 Muc13 protein_coding protein_coding MGP_C3HHeJ_T0044457.1 MGP_C3HHeJ_G0022633.1 mouse_genomes_project 16 57277490 57280783 - MGP_C3HHeJ_P0044457 Gm813 protein_coding protein_coding MGP_C3HHeJ_T0044138.1 MGP_C3HHeJ_G0022556.1 mouse_genomes_project 16 40495841 40599145 - MGP_C3HHeJ_P0044138 Gap43 protein_coding protein_coding MGP_C3HHeJ_T0044139.1 MGP_C3HHeJ_G0022556.1 mouse_genomes_project 16 40495857 40524174 - Gap43 protein_coding processed_transcript MGP_C3HHeJ_T0043788.1 MGP_C3HHeJ_G0022471.1 mouse_genomes_project 16 30249462 30272218 + Pcyt1a protein_coding retained_intron MGP_C3HHeJ_T0043789.1 MGP_C3HHeJ_G0022471.1 mouse_genomes_project 16 30249484 30275406 + Pcyt1a protein_coding retained_intron MGP_C3HHeJ_T0043790.1 MGP_C3HHeJ_G0022471.1 mouse_genomes_project 16 30249535 30295819 + MGP_C3HHeJ_P0043790 Pcyt1a protein_coding protein_coding MGP_C3HHeJ_T0043791.1 MGP_C3HHeJ_G0022471.1 mouse_genomes_project 16 30249544 30275276 + Pcyt1a protein_coding retained_intron MGP_C3HHeJ_T0044836.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91628592 91668818 - MGP_C3HHeJ_P0044836 Cryzl1 protein_coding protein_coding MGP_C3HHeJ_T0044837.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91628612 91668645 - MGP_C3HHeJ_P0044837 Cryzl1 protein_coding protein_coding MGP_C3HHeJ_T0044838.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91628796 91632503 - Cryzl1 protein_coding processed_transcript MGP_C3HHeJ_T0044839.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91628876 91668466 - MGP_C3HHeJ_P0044839 Cryzl1 protein_coding protein_coding MGP_C3HHeJ_T0044840.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91631671 91648102 - MGP_C3HHeJ_P0044840 Cryzl1 protein_coding protein_coding MGP_C3HHeJ_T0044841.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91631697 91657470 - MGP_C3HHeJ_P0044841 Cryzl1 protein_coding protein_coding MGP_C3HHeJ_T0044842.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91633728 91668544 - MGP_C3HHeJ_P0044842 Cryzl1 protein_coding protein_coding MGP_C3HHeJ_T0044843.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91633981 91638530 - Cryzl1 protein_coding retained_intron MGP_C3HHeJ_T0044844.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91646247 91668443 - Cryzl1 protein_coding retained_intron MGP_C3HHeJ_T0044845.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91653572 91668441 - Cryzl1 protein_coding retained_intron MGP_C3HHeJ_T0044846.1 MGP_C3HHeJ_G0022780.1 mouse_genomes_project 16 91655093 91668451 - Cryzl1 protein_coding processed_transcript MGP_C3HHeJ_T0100323.1 MGP_C3HHeJ_G0038517.1 mouse_genomes_project 16 84398809 84398936 + Gm26153 snoRNA snoRNA MGP_C3HHeJ_T0044716.1 MGP_C3HHeJ_G0022753.1 mouse_genomes_project 16 89399653 89400661 - MGP_C3HHeJ_P0044716 Krtap11-1 protein_coding protein_coding MGP_C3HHeJ_T0010026.1 MGP_C3HHeJ_G0008159.1 mouse_genomes_project 16 10362431 10362510 + Mir193b miRNA miRNA MGP_C3HHeJ_T0101776.1 MGP_C3HHeJ_G0039741.1 mouse_genomes_project 16 57680858 57682753 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0043735.1 MGP_C3HHeJ_G0022454.1 mouse_genomes_project 16 29665231 29685560 + MGP_C3HHeJ_P0043735 Mfi2 protein_coding protein_coding MGP_C3HHeJ_T0013040.1 MGP_C3HHeJ_G0011144.1 mouse_genomes_project 16 49064402 49065713 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012992.1 MGP_C3HHeJ_G0011096.1 mouse_genomes_project 16 12878554 12878837 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012988.1 MGP_C3HHeJ_G0011092.1 mouse_genomes_project 16 10995628 11000123 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006748.1 MGP_C3HHeJ_G0005559.1 mouse_genomes_project 16 16467929 16490264 - Gm43388 lincRNA lincRNA MGP_C3HHeJ_T0044419.1 MGP_C3HHeJ_G0022621.1 mouse_genomes_project 16 55338258 55418838 - MGP_C3HHeJ_P0044419 Adgrg7 protein_coding protein_coding MGP_C3HHeJ_T0003614.1 MGP_C3HHeJ_G0003270.1 mouse_genomes_project 16 44306404 44332093 + Gm15638 antisense antisense MGP_C3HHeJ_T0003615.1 MGP_C3HHeJ_G0003270.1 mouse_genomes_project 16 44306411 44318066 + Gm15638 antisense antisense MGP_C3HHeJ_T0003616.1 MGP_C3HHeJ_G0003270.1 mouse_genomes_project 16 44306416 44309465 + Gm15638 antisense antisense MGP_C3HHeJ_T0006784.1 MGP_C3HHeJ_G0005587.1 mouse_genomes_project 16 69007545 69011680 - Gm43265 lincRNA lincRNA MGP_C3HHeJ_T0010070.1 MGP_C3HHeJ_G0008203.1 mouse_genomes_project 16 75107400 75107510 + Gm22923 miRNA miRNA MGP_C3HHeJ_T0043707.1 MGP_C3HHeJ_G0022451.1 mouse_genomes_project 16 29054209 29073871 - MGP_C3HHeJ_P0043707 Apod protein_coding protein_coding MGP_C3HHeJ_T0043708.1 MGP_C3HHeJ_G0022451.1 mouse_genomes_project 16 29055088 29073867 - MGP_C3HHeJ_P0043708 Apod protein_coding protein_coding MGP_C3HHeJ_T0043709.1 MGP_C3HHeJ_G0022451.1 mouse_genomes_project 16 29055122 29073657 - Apod protein_coding retained_intron MGP_C3HHeJ_T0043710.1 MGP_C3HHeJ_G0022451.1 mouse_genomes_project 16 29055386 29062508 - Apod protein_coding retained_intron MGP_C3HHeJ_T0043711.1 MGP_C3HHeJ_G0022451.1 mouse_genomes_project 16 29055479 29062741 - Apod protein_coding retained_intron MGP_C3HHeJ_T0043712.1 MGP_C3HHeJ_G0022451.1 mouse_genomes_project 16 29062567 29070411 - Apod protein_coding retained_intron MGP_C3HHeJ_T0043060.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14146732 14167491 + MGP_C3HHeJ_P0043060 Ypel1 protein_coding protein_coding MGP_C3HHeJ_T0043061.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14147194 14167096 + Ypel1 protein_coding processed_transcript MGP_C3HHeJ_T0043062.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14147234 14155653 + Ypel1 protein_coding retained_intron MGP_C3HHeJ_T0043063.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14147235 14162849 + MGP_C3HHeJ_P0043063 Ypel1 protein_coding protein_coding MGP_C3HHeJ_T0043064.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14147262 14167800 + MGP_C3HHeJ_P0043064 Ypel1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043065.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14147265 14162931 + MGP_C3HHeJ_P0043065 Ypel1 protein_coding protein_coding MGP_C3HHeJ_T0043066.1 MGP_C3HHeJ_G0022298.1 mouse_genomes_project 16 14147340 14163449 + MGP_C3HHeJ_P0043066 Ypel1 protein_coding protein_coding MGP_C3HHeJ_T0010057.1 MGP_C3HHeJ_G0008190.1 mouse_genomes_project 16 42093151 42093268 + Gm25996 miRNA miRNA MGP_C3HHeJ_T0100327.1 MGP_C3HHeJ_G0038521.1 mouse_genomes_project 16 87294416 87294552 - Gm24891 snoRNA snoRNA MGP_C3HHeJ_T0000945.1 MGP_C3HHeJ_G0000883.1 mouse_genomes_project 16 91162407 91163208 + TEC TEC MGP_C3HHeJ_T0044156.1 MGP_C3HHeJ_G0022558.1 mouse_genomes_project 16 41941850 41957636 - MGP_C3HHeJ_P0044156 Tigit protein_coding protein_coding MGP_C3HHeJ_T0043922.1 MGP_C3HHeJ_G0022495.1 mouse_genomes_project 16 32607866 32643090 + MGP_C3HHeJ_P0043922 Ccdc14 protein_coding protein_coding MGP_C3HHeJ_T0098067.1 MGP_C3HHeJ_G0036279.1 mouse_genomes_project 16 97692564 97692672 - Gm24777 rRNA rRNA MGP_C3HHeJ_T0042768.1 MGP_C3HHeJ_G0022228.1 mouse_genomes_project 16 5302708 5306538 - MGP_C3HHeJ_P0042768 Tmem186 protein_coding protein_coding MGP_C3HHeJ_T0010043.1 MGP_C3HHeJ_G0008176.1 mouse_genomes_project 16 19980004 19980133 - Mir8095 miRNA miRNA MGP_C3HHeJ_T0043152.1 MGP_C3HHeJ_G0022315.1 mouse_genomes_project 16 14672485 14689280 - MGP_C3HHeJ_P0043152 Lrrc74b protein_coding protein_coding MGP_C3HHeJ_T0043153.1 MGP_C3HHeJ_G0022315.1 mouse_genomes_project 16 14672485 14689280 - MGP_C3HHeJ_P0043153 Lrrc74b protein_coding protein_coding MGP_C3HHeJ_T0043154.1 MGP_C3HHeJ_G0022315.1 mouse_genomes_project 16 14673450 14682465 - Lrrc74b protein_coding processed_transcript MGP_C3HHeJ_T0043155.1 MGP_C3HHeJ_G0022315.1 mouse_genomes_project 16 14676843 14689277 - MGP_C3HHeJ_P0043155 Lrrc74b protein_coding protein_coding MGP_C3HHeJ_T0043092.1 MGP_C3HHeJ_G0022304.1 mouse_genomes_project 16 14238784 14304411 - MGP_C3HHeJ_P0043092 Ube2l3 protein_coding protein_coding MGP_C3HHeJ_T0043093.1 MGP_C3HHeJ_G0022304.1 mouse_genomes_project 16 14238786 14303254 - MGP_C3HHeJ_P0043093 Ube2l3 protein_coding protein_coding MGP_C3HHeJ_T0043094.1 MGP_C3HHeJ_G0022304.1 mouse_genomes_project 16 14239089 14248896 - Ube2l3 protein_coding processed_transcript MGP_C3HHeJ_T0043095.1 MGP_C3HHeJ_G0022304.1 mouse_genomes_project 16 14240081 14303256 - MGP_C3HHeJ_P0043095 Ube2l3 protein_coding protein_coding MGP_C3HHeJ_T0043096.1 MGP_C3HHeJ_G0022304.1 mouse_genomes_project 16 14246117 14303235 - Ube2l3 protein_coding retained_intron MGP_C3HHeJ_T0044424.1 MGP_C3HHeJ_G0022624.1 mouse_genomes_project 16 55749689 55784505 + MGP_C3HHeJ_P0044424 Tomm70a protein_coding protein_coding MGP_C3HHeJ_T0044488.1 MGP_C3HHeJ_G0022648.1 mouse_genomes_project 16 57773253 57778054 - MGP_C3HHeJ_P0044488 Olfr191 protein_coding protein_coding MGP_C3HHeJ_T0003587.1 MGP_C3HHeJ_G0003248.1 mouse_genomes_project 16 14239401 14240476 + Gm15648 antisense antisense MGP_C3HHeJ_T0044676.1 MGP_C3HHeJ_G0022717.1 mouse_genomes_project 16 88432446 88434017 - MGP_C3HHeJ_P0044676 Krtap24-1 protein_coding protein_coding MGP_C3HHeJ_T0044782.1 MGP_C3HHeJ_G0022767.1 mouse_genomes_project 16 91131991 91135119 + MGP_C3HHeJ_P0044782 Olig2 protein_coding protein_coding MGP_C3HHeJ_T0042713.1 MGP_C3HHeJ_G0022212.1 mouse_genomes_project 16 1515840 1526573 + MGP_C3HHeJ_P0042713 4930451G09Rik protein_coding protein_coding MGP_C3HHeJ_T0043773.1 MGP_C3HHeJ_G0022463.1 mouse_genomes_project 16 29987102 29987868 + MGP_C3HHeJ_P0043773 Bex6 protein_coding protein_coding MGP_C3HHeJ_T0043067.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14167309 14191986 - MGP_C3HHeJ_P0043067 Ppil2 protein_coding protein_coding MGP_C3HHeJ_T0043068.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14167309 14191991 - MGP_C3HHeJ_P0043068 Ppil2 protein_coding protein_coding MGP_C3HHeJ_T0043069.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14168070 14191976 - MGP_C3HHeJ_P0043069 Ppil2 protein_coding protein_coding MGP_C3HHeJ_T0043070.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14169360 14170214 - Ppil2 protein_coding retained_intron MGP_C3HHeJ_T0043071.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14170856 14172272 - Ppil2 protein_coding retained_intron MGP_C3HHeJ_T0043072.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14173601 14184368 - Ppil2 protein_coding retained_intron MGP_C3HHeJ_T0043073.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14175675 14177899 - Ppil2 protein_coding retained_intron MGP_C3HHeJ_T0043074.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14176515 14191949 - MGP_C3HHeJ_P0043074 Ppil2 protein_coding protein_coding MGP_C3HHeJ_T0043075.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14177458 14191970 - Ppil2 protein_coding processed_transcript MGP_C3HHeJ_T0043076.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14177763 14191947 - Ppil2 protein_coding retained_intron MGP_C3HHeJ_T0043077.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14187967 14191970 - Ppil2 protein_coding processed_transcript MGP_C3HHeJ_T0043078.1 MGP_C3HHeJ_G0022299.1 mouse_genomes_project 16 14189583 14191966 - Ppil2 protein_coding retained_intron MGP_C3HHeJ_T0044317.1 MGP_C3HHeJ_G0022595.1 mouse_genomes_project 16 46810477 47019968 + MGP_C3HHeJ_P0044317 Morc1 protein_coding protein_coding MGP_C3HHeJ_T0013045.1 MGP_C3HHeJ_G0011149.1 mouse_genomes_project 16 59968326 59968585 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044084.1 MGP_C3HHeJ_G0022542.1 mouse_genomes_project 16 36479406 36494664 + MGP_C3HHeJ_P0044084 protein_coding protein_coding MGP_C3HHeJ_T0043499.1 MGP_C3HHeJ_G0022389.1 mouse_genomes_project 16 18583824 18602443 + MGP_C3HHeJ_P0043499 Ephb3 protein_coding protein_coding MGP_C3HHeJ_T0043500.1 MGP_C3HHeJ_G0022389.1 mouse_genomes_project 16 18590164 18602106 + MGP_C3HHeJ_P0043500 Ephb3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043501.1 MGP_C3HHeJ_G0022389.1 mouse_genomes_project 16 18595880 18602444 + Ephb3 protein_coding retained_intron MGP_C3HHeJ_T0043502.1 MGP_C3HHeJ_G0022389.1 mouse_genomes_project 16 18600824 18601826 + Ephb3 protein_coding retained_intron MGP_C3HHeJ_T0043164.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749017 14775392 + MGP_C3HHeJ_P0043164 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043165.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749020 14769839 + Smpd4 protein_coding processed_transcript MGP_C3HHeJ_T0043166.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749020 14775391 + MGP_C3HHeJ_P0043166 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043167.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749020 14756658 + MGP_C3HHeJ_P0043167 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043168.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749023 14773911 + MGP_C3HHeJ_P0043168 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043169.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749023 14756860 + MGP_C3HHeJ_P0043169 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043170.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749026 14754496 + Smpd4 protein_coding retained_intron MGP_C3HHeJ_T0043171.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749026 14775391 + Smpd4 protein_coding retained_intron MGP_C3HHeJ_T0043172.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749026 14751659 + Smpd4 protein_coding retained_intron MGP_C3HHeJ_T0043173.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749026 14775391 + MGP_C3HHeJ_P0043173 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043174.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749026 14756052 + MGP_C3HHeJ_P0043174 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043175.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749037 14769089 + MGP_C3HHeJ_P0043175 Smpd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043176.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749040 14756897 + MGP_C3HHeJ_P0043176 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043177.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749044 14772712 + Smpd4 protein_coding retained_intron MGP_C3HHeJ_T0043178.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749052 14756216 + MGP_C3HHeJ_P0043178 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043179.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14749180 14754158 + MGP_C3HHeJ_P0043179 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043180.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14751150 14773367 + MGP_C3HHeJ_P0043180 Smpd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043181.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14751150 14773367 + MGP_C3HHeJ_P0043181 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043182.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14751150 14773367 + MGP_C3HHeJ_P0043182 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043183.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14751150 14773367 + MGP_C3HHeJ_P0043183 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043184.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14751150 14773367 + MGP_C3HHeJ_P0043184 Smpd4 protein_coding protein_coding MGP_C3HHeJ_T0043185.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14768885 14771626 + Smpd4 protein_coding retained_intron MGP_C3HHeJ_T0043186.1 MGP_C3HHeJ_G0022318.1 mouse_genomes_project 16 14769150 14771530 + Smpd4 protein_coding retained_intron MGP_C3HHeJ_T0044314.1 MGP_C3HHeJ_G0022593.1 mouse_genomes_project 16 46435172 46435845 + MGP_C3HHeJ_P0044314 protein_coding protein_coding MGP_C3HHeJ_T0100307.1 MGP_C3HHeJ_G0038501.1 mouse_genomes_project 16 51914924 51915033 - Gm22459 snoRNA snoRNA MGP_C3HHeJ_T0097871.1 MGP_C3HHeJ_G0036083.1 mouse_genomes_project 16 57871393 57872319 - pseudogene pseudogene MGP_C3HHeJ_T0043745.1 MGP_C3HHeJ_G0022458.1 mouse_genomes_project 16 29753143 29795933 - MGP_C3HHeJ_P0043745 Senp5 protein_coding protein_coding MGP_C3HHeJ_T0043746.1 MGP_C3HHeJ_G0022458.1 mouse_genomes_project 16 29754155 29781672 - MGP_C3HHeJ_P0043746 Senp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043747.1 MGP_C3HHeJ_G0022458.1 mouse_genomes_project 16 29767488 29782848 - MGP_C3HHeJ_P0043747 Senp5 protein_coding protein_coding MGP_C3HHeJ_T0043748.1 MGP_C3HHeJ_G0022458.1 mouse_genomes_project 16 29768624 29795824 - Senp5 protein_coding retained_intron MGP_C3HHeJ_T0100284.1 MGP_C3HHeJ_G0038478.1 mouse_genomes_project 16 16564969 16565095 + Gm22158 snoRNA snoRNA MGP_C3HHeJ_T0044978.1 MGP_C3HHeJ_G0022804.1 mouse_genomes_project 16 94625167 94752061 + MGP_C3HHeJ_P0044978 Dyrk1a protein_coding protein_coding MGP_C3HHeJ_T0044979.1 MGP_C3HHeJ_G0022804.1 mouse_genomes_project 16 94625636 94749197 + MGP_C3HHeJ_P0044979 Dyrk1a protein_coding protein_coding MGP_C3HHeJ_T0044980.1 MGP_C3HHeJ_G0022804.1 mouse_genomes_project 16 94626021 94721190 + MGP_C3HHeJ_P0044980 Dyrk1a protein_coding protein_coding MGP_C3HHeJ_T0044981.1 MGP_C3HHeJ_G0022804.1 mouse_genomes_project 16 94626064 94752511 + MGP_C3HHeJ_P0044981 Dyrk1a protein_coding protein_coding MGP_C3HHeJ_T0044982.1 MGP_C3HHeJ_G0022804.1 mouse_genomes_project 16 94626064 94724074 + MGP_C3HHeJ_P0044982 Dyrk1a protein_coding protein_coding MGP_C3HHeJ_T0044983.1 MGP_C3HHeJ_G0022804.1 mouse_genomes_project 16 94724138 94735604 + Dyrk1a protein_coding retained_intron MGP_C3HHeJ_T0013050.1 MGP_C3HHeJ_G0011154.1 mouse_genomes_project 16 75089131 75089561 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011317.1 MGP_C3HHeJ_G0009450.1 mouse_genomes_project 16 46155442 46155674 + Gm25339 misc_RNA misc_RNA MGP_C3HHeJ_T0044686.1 MGP_C3HHeJ_G0022727.1 mouse_genomes_project 16 88647014 88656288 + MGP_C3HHeJ_P0044686 Krtap15 protein_coding protein_coding MGP_C3HHeJ_T0044688.1 MGP_C3HHeJ_G0022727.1 mouse_genomes_project 16 88655797 88656648 + MGP_C3HHeJ_P0044688 Krtap15 protein_coding protein_coding MGP_C3HHeJ_T0043676.1 MGP_C3HHeJ_G0022443.1 mouse_genomes_project 16 28025669 28028763 - MGP_C3HHeJ_P0043676 Gp5 protein_coding protein_coding MGP_C3HHeJ_T0044508.1 MGP_C3HHeJ_G0022663.1 mouse_genomes_project 16 58247040 58281982 - Crybg3 protein_coding retained_intron MGP_C3HHeJ_T0044509.1 MGP_C3HHeJ_G0022663.1 mouse_genomes_project 16 58248353 58311302 - MGP_C3HHeJ_P0044509 Crybg3 protein_coding protein_coding MGP_C3HHeJ_T0044510.1 MGP_C3HHeJ_G0022663.1 mouse_genomes_project 16 58282872 58296240 - Crybg3 protein_coding processed_transcript MGP_C3HHeJ_T0044511.1 MGP_C3HHeJ_G0022663.1 mouse_genomes_project 16 58300438 58309520 - MGP_C3HHeJ_P0044511 Crybg3 protein_coding protein_coding MGP_C3HHeJ_T0042984.1 MGP_C3HHeJ_G0022281.1 mouse_genomes_project 16 11674703 11678253 + MGP_C3HHeJ_P0042984 Snai2 protein_coding protein_coding MGP_C3HHeJ_T0013039.1 MGP_C3HHeJ_G0011143.1 mouse_genomes_project 16 48485472 48487107 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042570.1 MGP_C3HHeJ_G0022180.1 mouse_genomes_project 16 72658 73671 + MGP_C3HHeJ_P0042570 Olfr161 protein_coding protein_coding MGP_C3HHeJ_T0043517.1 MGP_C3HHeJ_G0022392.1 mouse_genomes_project 16 19148526 19179702 - MGP_C3HHeJ_P0043517 Ehhadh protein_coding protein_coding MGP_C3HHeJ_T0043751.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29880817 29896887 - MGP_C3HHeJ_P0043751 Pigx protein_coding protein_coding MGP_C3HHeJ_T0043752.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29880819 29884596 - Pigx protein_coding processed_transcript MGP_C3HHeJ_T0043753.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29880823 29896864 - Pigx protein_coding processed_transcript MGP_C3HHeJ_T0043754.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29880823 29896898 - MGP_C3HHeJ_P0043754 Pigx protein_coding protein_coding MGP_C3HHeJ_T0043755.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29880837 29896888 - MGP_C3HHeJ_P0043755 Pigx protein_coding protein_coding MGP_C3HHeJ_T0043756.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29880860 29896867 - MGP_C3HHeJ_P0043756 Pigx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043757.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29881695 29896853 - MGP_C3HHeJ_P0043757 Pigx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043758.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29883705 29896856 - MGP_C3HHeJ_P0043758 Pigx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043759.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29883911 29896860 - MGP_C3HHeJ_P0043759 Pigx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043760.1 MGP_C3HHeJ_G0022460.1 mouse_genomes_project 16 29894604 29896871 - MGP_C3HHeJ_P0043760 Pigx protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099042.1 MGP_C3HHeJ_G0037236.1 mouse_genomes_project 16 34136590 34136697 - Gm22885 snRNA snRNA MGP_C3HHeJ_T0099052.1 MGP_C3HHeJ_G0037246.1 mouse_genomes_project 16 38495898 38495992 + Gm22543 snRNA snRNA MGP_C3HHeJ_T0044342.1 MGP_C3HHeJ_G0022604.1 mouse_genomes_project 16 48226929 48288675 + MGP_C3HHeJ_P0044342 Cd47 protein_coding protein_coding MGP_C3HHeJ_T0044343.1 MGP_C3HHeJ_G0022604.1 mouse_genomes_project 16 48227098 48288684 + MGP_C3HHeJ_P0044343 Cd47 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044344.1 MGP_C3HHeJ_G0022604.1 mouse_genomes_project 16 48240239 48284106 + MGP_C3HHeJ_P0044344 Cd47 protein_coding protein_coding MGP_C3HHeJ_T0043650.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27076291 27133633 - MGP_C3HHeJ_P0043650 Atp13a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043651.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27076466 27217681 - MGP_C3HHeJ_P0043651 Atp13a4 protein_coding protein_coding MGP_C3HHeJ_T0043652.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27076478 27217567 - MGP_C3HHeJ_P0043652 Atp13a4 protein_coding protein_coding MGP_C3HHeJ_T0043653.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27076484 27091269 - Atp13a4 protein_coding processed_transcript MGP_C3HHeJ_T0043654.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27076524 27225024 - MGP_C3HHeJ_P0043654 Atp13a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043655.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27076850 27089468 - Atp13a4 protein_coding retained_intron MGP_C3HHeJ_T0043656.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27091611 27123057 - Atp13a4 protein_coding retained_intron MGP_C3HHeJ_T0043657.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27103627 27124094 - MGP_C3HHeJ_P0043657 Atp13a4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043658.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27103636 27225024 - MGP_C3HHeJ_P0043658 Atp13a4 protein_coding protein_coding MGP_C3HHeJ_T0043659.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27216509 27224958 - Atp13a4 protein_coding retained_intron MGP_C3HHeJ_T0043660.1 MGP_C3HHeJ_G0022437.1 mouse_genomes_project 16 27216562 27225019 - Atp13a4 protein_coding retained_intron MGP_C3HHeJ_T0044598.1 MGP_C3HHeJ_G0022694.1 mouse_genomes_project 16 77759138 77780663 - MGP_C3HHeJ_P0044598 Gm7334 protein_coding protein_coding MGP_C3HHeJ_T0011318.1 MGP_C3HHeJ_G0009451.1 mouse_genomes_project 16 64950007 64950320 + Gm22217 misc_RNA misc_RNA MGP_C3HHeJ_T0006759.1 MGP_C3HHeJ_G0005568.1 mouse_genomes_project 16 27708286 27721849 + 4632428C04Rik lincRNA lincRNA MGP_C3HHeJ_T0044637.1 MGP_C3HHeJ_G0022706.1 mouse_genomes_project 16 85567831 85621980 - MGP_C3HHeJ_P0044637 Adamts5 protein_coding protein_coding MGP_C3HHeJ_T0003581.1 MGP_C3HHeJ_G0003243.1 mouse_genomes_project 16 10294228 10314668 - antisense antisense MGP_C3HHeJ_T0003582.1 MGP_C3HHeJ_G0003243.1 mouse_genomes_project 16 10306893 10314664 - antisense antisense MGP_C3HHeJ_T0099035.1 MGP_C3HHeJ_G0037229.1 mouse_genomes_project 16 20543603 20543709 + Gm23715 snRNA snRNA MGP_C3HHeJ_T0044491.1 MGP_C3HHeJ_G0022651.1 mouse_genomes_project 16 57858379 57859309 - MGP_C3HHeJ_P0044491 Olfr196 protein_coding protein_coding MGP_C3HHeJ_T0044795.1 MGP_C3HHeJ_G0022772.1 mouse_genomes_project 16 91413482 91436907 + MGP_C3HHeJ_P0044795 Ifnar1 protein_coding protein_coding MGP_C3HHeJ_T0044796.1 MGP_C3HHeJ_G0022772.1 mouse_genomes_project 16 91413493 91436903 + MGP_C3HHeJ_P0044796 Ifnar1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044797.1 MGP_C3HHeJ_G0022772.1 mouse_genomes_project 16 91413508 91436907 + MGP_C3HHeJ_P0044797 Ifnar1 protein_coding protein_coding MGP_C3HHeJ_T0044798.1 MGP_C3HHeJ_G0022772.1 mouse_genomes_project 16 91413521 91420041 + Ifnar1 protein_coding retained_intron MGP_C3HHeJ_T0044799.1 MGP_C3HHeJ_G0022772.1 mouse_genomes_project 16 91413580 91424443 + MGP_C3HHeJ_P0044799 Ifnar1 protein_coding protein_coding MGP_C3HHeJ_T0043027.1 MGP_C3HHeJ_G0022294.1 mouse_genomes_project 16 13918327 13921642 - MGP_C3HHeJ_P0043027 Igll1 protein_coding protein_coding MGP_C3HHeJ_T0043028.1 MGP_C3HHeJ_G0022294.1 mouse_genomes_project 16 13918327 13921474 - MGP_C3HHeJ_P0043028 Igll1 protein_coding protein_coding MGP_C3HHeJ_T0043029.1 MGP_C3HHeJ_G0022294.1 mouse_genomes_project 16 13918330 13921642 - Igll1 protein_coding retained_intron MGP_C3HHeJ_T0043605.1 MGP_C3HHeJ_G0022421.1 mouse_genomes_project 16 22882666 23026505 + MGP_C3HHeJ_P0043605 Tprg protein_coding protein_coding MGP_C3HHeJ_T0043606.1 MGP_C3HHeJ_G0022421.1 mouse_genomes_project 16 22882670 22915323 + Tprg protein_coding retained_intron MGP_C3HHeJ_T0044695.1 MGP_C3HHeJ_G0022734.1 mouse_genomes_project 16 88760966 88761427 - MGP_C3HHeJ_P0044695 Krtap19-9b protein_coding protein_coding MGP_C3HHeJ_T0043543.1 MGP_C3HHeJ_G0022401.1 mouse_genomes_project 16 20257160 20263367 - MGP_C3HHeJ_P0043543 Crygs protein_coding protein_coding MGP_C3HHeJ_T0099070.1 MGP_C3HHeJ_G0037264.1 mouse_genomes_project 16 91994842 91994940 + Gm23210 snRNA snRNA MGP_C3HHeJ_T0044077.1 MGP_C3HHeJ_G0022540.1 mouse_genomes_project 16 36427491 36474287 - MGP_C3HHeJ_P0044077 Maats1 protein_coding protein_coding MGP_C3HHeJ_T0044078.1 MGP_C3HHeJ_G0022540.1 mouse_genomes_project 16 36452876 36474254 - MGP_C3HHeJ_P0044078 Maats1 protein_coding protein_coding MGP_C3HHeJ_T0044079.1 MGP_C3HHeJ_G0022540.1 mouse_genomes_project 16 36464107 36474585 - Maats1 protein_coding processed_transcript MGP_C3HHeJ_T0000935.1 MGP_C3HHeJ_G0000873.1 mouse_genomes_project 16 76799948 76802518 - TEC TEC MGP_C3HHeJ_T0003628.1 MGP_C3HHeJ_G0003281.1 mouse_genomes_project 16 96278494 96280607 - Gm15317 antisense antisense MGP_C3HHeJ_T0010031.1 MGP_C3HHeJ_G0008164.1 mouse_genomes_project 16 11137058 11137125 + Mir484 miRNA miRNA MGP_C3HHeJ_T0043595.1 MGP_C3HHeJ_G0022415.1 mouse_genomes_project 16 20998329 21067951 - MGP_C3HHeJ_P0043595 Masp1 protein_coding protein_coding MGP_C3HHeJ_T0043596.1 MGP_C3HHeJ_G0022415.1 mouse_genomes_project 16 21025838 21067911 - MGP_C3HHeJ_P0043596 Masp1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0017275.1 MGP_C3HHeJ_G0015081.1 mouse_genomes_project 16 41003019 41136976 - 4932412D23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017276.1 MGP_C3HHeJ_G0015081.1 mouse_genomes_project 16 41072909 41137151 - 4932412D23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017277.1 MGP_C3HHeJ_G0015081.1 mouse_genomes_project 16 41073270 41137129 - 4932412D23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017278.1 MGP_C3HHeJ_G0015081.1 mouse_genomes_project 16 41073422 41137135 - 4932412D23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0012991.1 MGP_C3HHeJ_G0011095.1 mouse_genomes_project 16 12394958 12396012 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044387.1 MGP_C3HHeJ_G0022616.1 mouse_genomes_project 16 54622076 54627287 - MGP_C3HHeJ_P0044387 Trmt10c protein_coding protein_coding MGP_C3HHeJ_T0010072.1 MGP_C3HHeJ_G0008205.1 mouse_genomes_project 16 76987410 76987504 + Mirlet7c-1 miRNA miRNA MGP_C3HHeJ_T0043100.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381481 14383831 + MGP_C3HHeJ_P0043100 Tmem191c protein_coding protein_coding MGP_C3HHeJ_T0043101.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381486 14383831 + MGP_C3HHeJ_P0043101 Tmem191c protein_coding protein_coding MGP_C3HHeJ_T0043102.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381500 14382650 + Tmem191c protein_coding processed_transcript MGP_C3HHeJ_T0043103.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381514 14382269 + Tmem191c protein_coding retained_intron MGP_C3HHeJ_T0043104.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381514 14383827 + MGP_C3HHeJ_P0043104 Tmem191c protein_coding protein_coding MGP_C3HHeJ_T0043105.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381520 14382572 + Tmem191c protein_coding processed_transcript MGP_C3HHeJ_T0043106.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381606 14382907 + MGP_C3HHeJ_P0043106 Tmem191c protein_coding protein_coding MGP_C3HHeJ_T0043107.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14381849 14383831 + MGP_C3HHeJ_P0043107 Tmem191c protein_coding protein_coding MGP_C3HHeJ_T0043108.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14382032 14383375 + MGP_C3HHeJ_P0043108 Tmem191c protein_coding protein_coding MGP_C3HHeJ_T0043109.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14382253 14383223 + Tmem191c protein_coding retained_intron MGP_C3HHeJ_T0043110.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14382267 14383336 + Tmem191c protein_coding retained_intron MGP_C3HHeJ_T0043111.1 MGP_C3HHeJ_G0022307.1 mouse_genomes_project 16 14382770 14388399 + Tmem191c protein_coding retained_intron MGP_C3HHeJ_T0000132.1 MGP_C3HHeJ_G0000102.1 mouse_genomes_project 16 16520479 16520938 - MGP_C3HHeJ_P0000132 Iglv2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0000133.1 MGP_C3HHeJ_G0000102.1 mouse_genomes_project 16 16520479 16520923 - MGP_C3HHeJ_P0000133 Iglv2 IG_V_gene IG_V_gene MGP_C3HHeJ_T0043682.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28243124 28284082 - MGP_C3HHeJ_P0043682 Tmem44 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043683.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28243131 28283735 - Tmem44 protein_coding retained_intron MGP_C3HHeJ_T0043684.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28243131 28284359 - MGP_C3HHeJ_P0043684 Tmem44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043685.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28244967 28284367 - MGP_C3HHeJ_P0043685 Tmem44 protein_coding protein_coding MGP_C3HHeJ_T0043686.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28244969 28284367 - MGP_C3HHeJ_P0043686 Tmem44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043687.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28245246 28272872 - MGP_C3HHeJ_P0043687 Tmem44 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043688.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28248838 28284328 - Tmem44 protein_coding retained_intron MGP_C3HHeJ_T0043689.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28249219 28284631 - Tmem44 protein_coding retained_intron MGP_C3HHeJ_T0043690.1 MGP_C3HHeJ_G0022445.1 mouse_genomes_project 16 28275675 28284317 - Tmem44 protein_coding processed_transcript MGP_C3HHeJ_T0003590.1 MGP_C3HHeJ_G0003251.1 mouse_genomes_project 16 19958522 19964684 + 9230117E06Rik antisense antisense MGP_C3HHeJ_T0043356.1 MGP_C3HHeJ_G0022360.1 mouse_genomes_project 16 16769400 16770339 - MGP_C3HHeJ_P0043356 Olfr167 protein_coding protein_coding MGP_C3HHeJ_T0042857.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7976395 8017093 - MGP_C3HHeJ_P0042857 Zc3h7a protein_coding protein_coding MGP_C3HHeJ_T0042858.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7976929 7980696 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042859.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7978846 7981718 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042860.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7980519 7988835 - MGP_C3HHeJ_P0042860 Zc3h7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042861.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7980613 8017041 - MGP_C3HHeJ_P0042861 Zc3h7a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042862.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7985476 8016750 - MGP_C3HHeJ_P0042862 Zc3h7a protein_coding unknown_likely_coding MGP_C3HHeJ_T0042863.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7985518 8016800 - MGP_C3HHeJ_P0042863 Zc3h7a protein_coding protein_coding MGP_C3HHeJ_T0042864.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7985704 7987683 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042865.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7987684 7991729 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042866.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7988837 8015673 - MGP_C3HHeJ_P0042866 Zc3h7a protein_coding protein_coding MGP_C3HHeJ_T0042867.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7990607 7991538 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042868.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7991599 7993059 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042869.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7991987 7996350 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042870.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7993325 7998742 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042871.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7994484 7998764 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0042872.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 7996801 8015640 - MGP_C3HHeJ_P0042872 Zc3h7a protein_coding protein_coding MGP_C3HHeJ_T0042873.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 8001043 8016265 - MGP_C3HHeJ_P0042873 Zc3h7a protein_coding protein_coding MGP_C3HHeJ_T0042874.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 8001053 8016764 - MGP_C3HHeJ_P0042874 Zc3h7a protein_coding protein_coding MGP_C3HHeJ_T0042875.1 MGP_C3HHeJ_G0022254.1 mouse_genomes_project 16 8003458 8017042 - Zc3h7a protein_coding retained_intron MGP_C3HHeJ_T0010029.1 MGP_C3HHeJ_G0008162.1 mouse_genomes_project 16 10765992 10766081 + Gm27734 miRNA miRNA MGP_C3HHeJ_T0000944.1 MGP_C3HHeJ_G0000882.1 mouse_genomes_project 16 79103000 79103600 + TEC TEC MGP_C3HHeJ_T0003611.1 MGP_C3HHeJ_G0003267.1 mouse_genomes_project 16 39633499 39654028 - Gm28750 antisense antisense MGP_C3HHeJ_T0044093.1 MGP_C3HHeJ_G0022545.1 mouse_genomes_project 16 36577016 36584296 - MGP_C3HHeJ_P0044093 Adprh protein_coding protein_coding MGP_C3HHeJ_T0013034.1 MGP_C3HHeJ_G0011138.1 mouse_genomes_project 16 43780128 43780894 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044783.1 MGP_C3HHeJ_G0022768.1 mouse_genomes_project 16 91169892 91172054 + MGP_C3HHeJ_P0044783 Olig1 protein_coding protein_coding MGP_C3HHeJ_T0013017.1 MGP_C3HHeJ_G0011121.1 mouse_genomes_project 16 30409559 30410168 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098378.1 MGP_C3HHeJ_G0036585.1 mouse_genomes_project 16 28719329 28723455 - Gm15742 sense_intronic sense_intronic MGP_C3HHeJ_T0000036.1 MGP_C3HHeJ_G0000029.1 mouse_genomes_project 16 16308064 16308102 - MGP_C3HHeJ_P0000036 Iglj1 IG_J_gene IG_J_gene MGP_C3HHeJ_T0101775.1 MGP_C3HHeJ_G0039740.1 mouse_genomes_project 16 57666591 57667427 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101770.1 MGP_C3HHeJ_G0039735.1 mouse_genomes_project 16 10872470 10875353 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0042791.1 MGP_C3HHeJ_G0022233.1 mouse_genomes_project 16 5522000 5555810 + MGP_C3HHeJ_P0042791 1810013L24Rik protein_coding protein_coding MGP_C3HHeJ_T0013030.1 MGP_C3HHeJ_G0011134.1 mouse_genomes_project 16 41468109 41469265 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044337.1 MGP_C3HHeJ_G0022602.1 mouse_genomes_project 16 47427592 47562906 + MGP_C3HHeJ_P0044337 Myh15 protein_coding protein_coding MGP_C3HHeJ_T0098244.1 MGP_C3HHeJ_G0036456.1 mouse_genomes_project 16 30988166 30988565 - Gm23916 ribozyme ribozyme MGP_C3HHeJ_T0098060.1 MGP_C3HHeJ_G0036272.1 mouse_genomes_project 16 27846707 27846810 - n-R5s32 rRNA rRNA MGP_C3HHeJ_T0042736.1 MGP_C3HHeJ_G0022218.1 mouse_genomes_project 16 1642157 1691336 - MGP_C3HHeJ_P0042736 Ppl protein_coding protein_coding MGP_C3HHeJ_T0098057.1 MGP_C3HHeJ_G0036269.1 mouse_genomes_project 16 5571001 5571094 - Gm22224 rRNA rRNA MGP_C3HHeJ_T0044901.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93589659 93609323 - Setd4 protein_coding retained_intron MGP_C3HHeJ_T0044902.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93589659 93609335 - MGP_C3HHeJ_P0044902 Setd4 protein_coding protein_coding MGP_C3HHeJ_T0044903.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93589660 93594544 - Setd4 protein_coding processed_transcript MGP_C3HHeJ_T0044904.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93589662 93594930 - Setd4 protein_coding retained_intron MGP_C3HHeJ_T0044905.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93589662 93609347 - MGP_C3HHeJ_P0044905 Setd4 protein_coding protein_coding MGP_C3HHeJ_T0044906.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93596804 93603023 - Setd4 protein_coding processed_transcript MGP_C3HHeJ_T0044907.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93596936 93609596 - Setd4 protein_coding processed_transcript MGP_C3HHeJ_T0044908.1 MGP_C3HHeJ_G0022791.1 mouse_genomes_project 16 93607234 93609347 - Setd4 protein_coding processed_transcript MGP_C3HHeJ_T0044691.1 MGP_C3HHeJ_G0022730.1 mouse_genomes_project 16 88706909 88707435 - MGP_C3HHeJ_P0044691 Krtap19-3 protein_coding protein_coding MGP_C3HHeJ_T0044520.1 MGP_C3HHeJ_G0022666.1 mouse_genomes_project 16 61654704 61707510 - MGP_C3HHeJ_P0044520 Nsun3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044521.1 MGP_C3HHeJ_G0022666.1 mouse_genomes_project 16 61654704 61707510 - MGP_C3HHeJ_P0044521 Nsun3 protein_coding protein_coding MGP_C3HHeJ_T0044522.1 MGP_C3HHeJ_G0022666.1 mouse_genomes_project 16 61657420 61687856 - Nsun3 protein_coding processed_transcript MGP_C3HHeJ_T0044523.1 MGP_C3HHeJ_G0022666.1 mouse_genomes_project 16 61691424 61707499 - MGP_C3HHeJ_P0044523 Nsun3 protein_coding protein_coding MGP_C3HHeJ_T0044524.1 MGP_C3HHeJ_G0022666.1 mouse_genomes_project 16 61696898 61707551 - Nsun3 protein_coding processed_transcript MGP_C3HHeJ_T0044525.1 MGP_C3HHeJ_G0022666.1 mouse_genomes_project 16 61699983 61707446 - Nsun3 protein_coding processed_transcript MGP_C3HHeJ_T0012994.1 MGP_C3HHeJ_G0011098.1 mouse_genomes_project 16 13904044 13904294 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043677.1 MGP_C3HHeJ_G0022444.1 mouse_genomes_project 16 28030406 28110657 - MGP_C3HHeJ_P0043677 Atp13a3 protein_coding protein_coding MGP_C3HHeJ_T0043678.1 MGP_C3HHeJ_G0022444.1 mouse_genomes_project 16 28030406 28110657 - MGP_C3HHeJ_P0043678 Atp13a3 protein_coding protein_coding MGP_C3HHeJ_T0043679.1 MGP_C3HHeJ_G0022444.1 mouse_genomes_project 16 28074277 28077352 - Atp13a3 protein_coding retained_intron MGP_C3HHeJ_T0043680.1 MGP_C3HHeJ_G0022444.1 mouse_genomes_project 16 28081753 28110612 - Atp13a3 protein_coding retained_intron MGP_C3HHeJ_T0043681.1 MGP_C3HHeJ_G0022444.1 mouse_genomes_project 16 28108019 28110964 - Atp13a3 protein_coding retained_intron MGP_C3HHeJ_T0099066.1 MGP_C3HHeJ_G0037260.1 mouse_genomes_project 16 83922878 83922985 + Gm24508 snRNA snRNA MGP_C3HHeJ_T0044180.1 MGP_C3HHeJ_G0022564.1 mouse_genomes_project 16 42391432 42446833 - MGP_C3HHeJ_P0044180 Atp6v1a protein_coding protein_coding MGP_C3HHeJ_T0044181.1 MGP_C3HHeJ_G0022564.1 mouse_genomes_project 16 42391675 42446724 - MGP_C3HHeJ_P0044181 Atp6v1a protein_coding protein_coding MGP_C3HHeJ_T0044182.1 MGP_C3HHeJ_G0022564.1 mouse_genomes_project 16 42403253 42446508 - Atp6v1a protein_coding retained_intron MGP_C3HHeJ_T0044183.1 MGP_C3HHeJ_G0022564.1 mouse_genomes_project 16 42415965 42447158 - MGP_C3HHeJ_P0044183 Atp6v1a protein_coding protein_coding MGP_C3HHeJ_T0044184.1 MGP_C3HHeJ_G0022564.1 mouse_genomes_project 16 42416088 42446546 - MGP_C3HHeJ_P0044184 Atp6v1a protein_coding protein_coding MGP_C3HHeJ_T0044185.1 MGP_C3HHeJ_G0022564.1 mouse_genomes_project 16 42418158 42447233 - MGP_C3HHeJ_P0044185 Atp6v1a protein_coding protein_coding MGP_C3HHeJ_T0045094.1 MGP_C3HHeJ_G0022828.1 mouse_genomes_project 16 98214243 98214736 + protein_coding retained_intron MGP_C3HHeJ_T0043977.1 MGP_C3HHeJ_G0022516.1 mouse_genomes_project 16 34282965 34302498 + MGP_C3HHeJ_P0043977 2010005H15Rik protein_coding protein_coding MGP_C3HHeJ_T0042885.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8171716 8614422 + MGP_C3HHeJ_P0042885 Snx29 protein_coding protein_coding MGP_C3HHeJ_T0042886.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8171780 8255136 + MGP_C3HHeJ_P0042886 Snx29 protein_coding protein_coding MGP_C3HHeJ_T0042887.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8256947 8614422 + MGP_C3HHeJ_P0042887 Snx29 protein_coding protein_coding MGP_C3HHeJ_T0042888.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8257956 8519071 + MGP_C3HHeJ_P0042888 Snx29 protein_coding protein_coding MGP_C3HHeJ_T0042889.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8272032 8537130 + MGP_C3HHeJ_P0042889 Snx29 protein_coding protein_coding MGP_C3HHeJ_T0042890.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8296039 8488970 + Snx29 protein_coding retained_intron MGP_C3HHeJ_T0042891.1 MGP_C3HHeJ_G0022258.1 mouse_genomes_project 16 8298164 8519012 + Snx29 protein_coding retained_intron MGP_C3HHeJ_T0010073.1 MGP_C3HHeJ_G0008206.1 mouse_genomes_project 16 77035907 77035978 + Mir125b-2 miRNA miRNA MGP_C3HHeJ_T0044675.1 MGP_C3HHeJ_G0022716.1 mouse_genomes_project 16 88373227 88375583 - MGP_C3HHeJ_P0044675 Cldn8 protein_coding protein_coding MGP_C3HHeJ_T0043774.1 MGP_C3HHeJ_G0022464.1 mouse_genomes_project 16 30029488 30046858 - MGP_C3HHeJ_P0043774 Fbxo45 protein_coding protein_coding MGP_C3HHeJ_T0042769.1 MGP_C3HHeJ_G0022229.1 mouse_genomes_project 16 5306499 5326340 + MGP_C3HHeJ_P0042769 Pmm2 protein_coding protein_coding MGP_C3HHeJ_T0042770.1 MGP_C3HHeJ_G0022229.1 mouse_genomes_project 16 5306548 5317924 + Pmm2 protein_coding retained_intron MGP_C3HHeJ_T0042771.1 MGP_C3HHeJ_G0022229.1 mouse_genomes_project 16 5306563 5313842 + Pmm2 protein_coding retained_intron MGP_C3HHeJ_T0042772.1 MGP_C3HHeJ_G0022229.1 mouse_genomes_project 16 5306867 5320236 + Pmm2 protein_coding processed_transcript MGP_C3HHeJ_T0042773.1 MGP_C3HHeJ_G0022229.1 mouse_genomes_project 16 5314796 5317519 + Pmm2 protein_coding retained_intron MGP_C3HHeJ_T0042774.1 MGP_C3HHeJ_G0022229.1 mouse_genomes_project 16 5317400 5325551 + Pmm2 protein_coding retained_intron MGP_C3HHeJ_T0006762.1 MGP_C3HHeJ_G0005571.1 mouse_genomes_project 16 31253777 31254649 - 1700007L15Rik lincRNA lincRNA MGP_C3HHeJ_T0043873.1 MGP_C3HHeJ_G0022486.1 mouse_genomes_project 16 31115077 31166101 + MGP_C3HHeJ_P0043873 Snx4 protein_coding protein_coding MGP_C3HHeJ_T0044278.1 MGP_C3HHeJ_G0022585.1 mouse_genomes_project 16 43981836 44009707 - MGP_C3HHeJ_P0044278 BC016579 protein_coding protein_coding MGP_C3HHeJ_T0044061.1 MGP_C3HHeJ_G0022533.1 mouse_genomes_project 16 35749319 35756603 - MGP_C3HHeJ_P0044061 Ndufb4 protein_coding protein_coding MGP_C3HHeJ_T0044062.1 MGP_C3HHeJ_G0022533.1 mouse_genomes_project 16 35749750 35751509 - Ndufb4 protein_coding retained_intron MGP_C3HHeJ_T0011308.1 MGP_C3HHeJ_G0009441.1 mouse_genomes_project 16 4855384 4855658 + Gm23476 misc_RNA misc_RNA MGP_C3HHeJ_T0000933.1 MGP_C3HHeJ_G0000871.1 mouse_genomes_project 16 76793576 76794850 + TEC TEC MGP_C3HHeJ_T0044218.1 MGP_C3HHeJ_G0022571.1 mouse_genomes_project 16 43071238 43084221 + MGP_C3HHeJ_P0044218 Nepro protein_coding protein_coding MGP_C3HHeJ_T0044219.1 MGP_C3HHeJ_G0022571.1 mouse_genomes_project 16 43071294 43078301 + MGP_C3HHeJ_P0044219 Nepro protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044220.1 MGP_C3HHeJ_G0022571.1 mouse_genomes_project 16 43071294 43083510 + MGP_C3HHeJ_P0044220 Nepro protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044221.1 MGP_C3HHeJ_G0022571.1 mouse_genomes_project 16 43073104 43081066 + Nepro protein_coding retained_intron MGP_C3HHeJ_T0044222.1 MGP_C3HHeJ_G0022571.1 mouse_genomes_project 16 43074056 43081663 + MGP_C3HHeJ_P0044222 Nepro protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044554.1 MGP_C3HHeJ_G0022680.1 mouse_genomes_project 16 69080928 69088925 - MGP_C3HHeJ_P0044554 protein_coding protein_coding MGP_C3HHeJ_T0044199.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42672510 42713197 + MGP_C3HHeJ_P0044199 Spice1 protein_coding protein_coding MGP_C3HHeJ_T0044200.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42672803 42695468 + Spice1 protein_coding processed_transcript MGP_C3HHeJ_T0044201.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42673435 42692450 + Spice1 protein_coding processed_transcript MGP_C3HHeJ_T0044202.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42692352 42695106 + Spice1 protein_coding retained_intron MGP_C3HHeJ_T0044203.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42692422 42695473 + Spice1 protein_coding retained_intron MGP_C3HHeJ_T0044204.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42694723 42710383 + Spice1 protein_coding retained_intron MGP_C3HHeJ_T0044205.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42695165 42698337 + Spice1 protein_coding processed_transcript MGP_C3HHeJ_T0044206.1 MGP_C3HHeJ_G0022568.1 mouse_genomes_project 16 42710060 42711809 + Spice1 protein_coding retained_intron MGP_C3HHeJ_T0043030.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930587 13946052 + MGP_C3HHeJ_P0043030 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043031.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930608 13953188 + MGP_C3HHeJ_P0043031 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043032.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930618 13939535 + MGP_C3HHeJ_P0043032 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043033.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930625 13943736 + MGP_C3HHeJ_P0043033 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043034.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930632 13953193 + MGP_C3HHeJ_P0043034 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043035.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930637 13945669 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043036.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930638 13940859 + MGP_C3HHeJ_P0043036 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043037.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930651 13939550 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043038.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930658 13939262 + MGP_C3HHeJ_P0043038 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043039.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930668 13953193 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043040.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930691 13939197 + MGP_C3HHeJ_P0043040 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043041.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13930816 13939677 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043042.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13943651 13953176 + MGP_C3HHeJ_P0043042 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043043.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13944421 13953193 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043044.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13945728 13946909 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043045.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13946846 13947913 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043046.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13947112 13948090 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043047.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13948041 13953178 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0043048.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13950428 13952703 + MGP_C3HHeJ_P0043048 Top3b protein_coding protein_coding MGP_C3HHeJ_T0043049.1 MGP_C3HHeJ_G0022295.1 mouse_genomes_project 16 13951704 13952622 + Top3b protein_coding retained_intron MGP_C3HHeJ_T0044158.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42161108 42187082 - MGP_C3HHeJ_P0044158 Qtrtd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044159.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42161111 42187099 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0044160.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42161111 42187136 - MGP_C3HHeJ_P0044160 Qtrtd1 protein_coding protein_coding MGP_C3HHeJ_T0044161.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42162488 42165028 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0044162.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42162734 42225667 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0044163.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42164979 42166868 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0044164.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42166418 42187107 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0044165.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42169123 42174415 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0044166.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42174233 42187106 - MGP_C3HHeJ_P0044166 Qtrtd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044167.1 MGP_C3HHeJ_G0022560.1 mouse_genomes_project 16 42177749 42187107 - Qtrtd1 protein_coding retained_intron MGP_C3HHeJ_T0042701.1 MGP_C3HHeJ_G0022207.1 mouse_genomes_project 16 1378993 1396493 + MGP_C3HHeJ_P0042701 4930562C15Rik protein_coding non_stop_decay MGP_C3HHeJ_T0042702.1 MGP_C3HHeJ_G0022207.1 mouse_genomes_project 16 1378993 1409384 + MGP_C3HHeJ_P0042702 4930562C15Rik protein_coding protein_coding MGP_C3HHeJ_T0042703.1 MGP_C3HHeJ_G0022207.1 mouse_genomes_project 16 1384683 1396499 + MGP_C3HHeJ_P0042703 4930562C15Rik protein_coding non_stop_decay MGP_C3HHeJ_T0042704.1 MGP_C3HHeJ_G0022207.1 mouse_genomes_project 16 1395108 1402755 + MGP_C3HHeJ_P0042704 4930562C15Rik protein_coding protein_coding MGP_C3HHeJ_T0042705.1 MGP_C3HHeJ_G0022207.1 mouse_genomes_project 16 1403265 1409042 + MGP_C3HHeJ_P0042705 4930562C15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042706.1 MGP_C3HHeJ_G0022207.1 mouse_genomes_project 16 1406015 1406871 + 4930562C15Rik protein_coding retained_intron MGP_C3HHeJ_T0043230.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15224185 15247957 + MGP_C3HHeJ_P0043230 Dgcr6 protein_coding protein_coding MGP_C3HHeJ_T0043231.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15224201 15227885 + Dgcr6 protein_coding processed_transcript MGP_C3HHeJ_T0043232.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15224217 15241562 + Dgcr6 protein_coding processed_transcript MGP_C3HHeJ_T0043234.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15240212 15247939 + MGP_C3HHeJ_P0043234 Dgcr6 protein_coding protein_coding MGP_C3HHeJ_T0043235.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15241447 15248234 + MGP_C3HHeJ_P0043235 Dgcr6 protein_coding protein_coding MGP_C3HHeJ_T0043236.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15241496 15247955 + MGP_C3HHeJ_P0043236 Dgcr6 protein_coding protein_coding MGP_C3HHeJ_T0043237.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15241501 15248229 + MGP_C3HHeJ_P0043237 Dgcr6 protein_coding protein_coding MGP_C3HHeJ_T0043238.1 MGP_C3HHeJ_G0022333.1 mouse_genomes_project 16 15246076 15247940 + Dgcr6 protein_coding processed_transcript MGP_C3HHeJ_T0003625.1 MGP_C3HHeJ_G0003278.1 mouse_genomes_project 16 92585549 92592738 + Gm26626 antisense antisense MGP_C3HHeJ_T0043438.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17898969 17906407 + MGP_C3HHeJ_P0043438 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043439.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17898977 17906269 + MGP_C3HHeJ_P0043439 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043440.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17898977 17933313 + MGP_C3HHeJ_P0043440 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043441.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17898986 17933318 + MGP_C3HHeJ_P0043441 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043442.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17899170 17933313 + MGP_C3HHeJ_P0043442 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043444.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17917230 17933313 + MGP_C3HHeJ_P0043444 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043445.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17917247 17930432 + Ece2 protein_coding retained_intron MGP_C3HHeJ_T0043446.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17917247 17933874 + MGP_C3HHeJ_P0043446 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043447.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17917253 17933313 + MGP_C3HHeJ_P0043447 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0043448.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17918547 17925355 + Ece2 protein_coding retained_intron MGP_C3HHeJ_T0043449.1 MGP_C3HHeJ_G0022379.1 mouse_genomes_project 16 17920272 17933883 + MGP_C3HHeJ_P0043449 Ece2 protein_coding protein_coding MGP_C3HHeJ_T0006763.1 MGP_C3HHeJ_G0005572.1 mouse_genomes_project 16 33451179 33457429 - 1600019K03Rik lincRNA lincRNA MGP_C3HHeJ_T0006795.1 MGP_C3HHeJ_G0005594.1 mouse_genomes_project 16 91223002 91232350 - Gm15966 lincRNA lincRNA MGP_C3HHeJ_T0006796.1 MGP_C3HHeJ_G0005594.1 mouse_genomes_project 16 91223227 91229115 - Gm15966 lincRNA lincRNA MGP_C3HHeJ_T0100301.1 MGP_C3HHeJ_G0038495.1 mouse_genomes_project 16 36329708 36329837 - Gm27931 snoRNA snoRNA MGP_C3HHeJ_T0006736.1 MGP_C3HHeJ_G0005548.1 mouse_genomes_project 16 358216 379831 + Gm26675 lincRNA lincRNA MGP_C3HHeJ_T0099049.1 MGP_C3HHeJ_G0037243.1 mouse_genomes_project 16 34500174 34500277 + Gm25903 snRNA snRNA MGP_C3HHeJ_T0100291.1 MGP_C3HHeJ_G0038485.1 mouse_genomes_project 16 20642134 20642273 + Gm24616 snoRNA snoRNA MGP_C3HHeJ_T0006792.1 MGP_C3HHeJ_G0005592.1 mouse_genomes_project 16 90424617 90425340 + 1110008E08Rik lincRNA lincRNA MGP_C3HHeJ_T0006793.1 MGP_C3HHeJ_G0005592.1 mouse_genomes_project 16 90424617 90425338 + 1110008E08Rik lincRNA lincRNA MGP_C3HHeJ_T0010069.1 MGP_C3HHeJ_G0008202.1 mouse_genomes_project 16 73645466 73645544 - Mir691 miRNA miRNA MGP_C3HHeJ_T0044699.1 MGP_C3HHeJ_G0022738.1 mouse_genomes_project 16 88860852 88861440 + MGP_C3HHeJ_P0044699 Krtap6-1 protein_coding protein_coding MGP_C3HHeJ_T0044913.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93860347 93909176 + MGP_C3HHeJ_P0044913 Morc3 protein_coding protein_coding MGP_C3HHeJ_T0044914.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93860347 93909173 + MGP_C3HHeJ_P0044914 Morc3 protein_coding protein_coding MGP_C3HHeJ_T0044915.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93860461 93874772 + Morc3 protein_coding retained_intron MGP_C3HHeJ_T0044916.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93860483 93908131 + MGP_C3HHeJ_P0044916 Morc3 protein_coding protein_coding MGP_C3HHeJ_T0044917.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93860489 93892738 + MGP_C3HHeJ_P0044917 Morc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044918.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93874654 93880957 + Morc3 protein_coding processed_transcript MGP_C3HHeJ_T0044919.1 MGP_C3HHeJ_G0022795.1 mouse_genomes_project 16 93885514 93887664 + Morc3 protein_coding retained_intron MGP_C3HHeJ_T0100280.1 MGP_C3HHeJ_G0038474.1 mouse_genomes_project 16 5055389 5055533 + Gm24579 snoRNA snoRNA MGP_C3HHeJ_T0010063.1 MGP_C3HHeJ_G0008196.1 mouse_genomes_project 16 54661063 54661167 + Gm24047 miRNA miRNA MGP_C3HHeJ_T0043098.1 MGP_C3HHeJ_G0022306.1 mouse_genomes_project 16 14337492 14368330 + MGP_C3HHeJ_P0043098 Hic2 protein_coding protein_coding MGP_C3HHeJ_T0043099.1 MGP_C3HHeJ_G0022306.1 mouse_genomes_project 16 14337584 14366495 + MGP_C3HHeJ_P0043099 Hic2 protein_coding protein_coding MGP_C3HHeJ_T0013053.1 MGP_C3HHeJ_G0011157.1 mouse_genomes_project 16 78381701 78382053 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013016.1 MGP_C3HHeJ_G0011120.1 mouse_genomes_project 16 29779694 29779977 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044356.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50693681 50905847 - MGP_C3HHeJ_P0044356 Alcam protein_coding protein_coding MGP_C3HHeJ_T0044357.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50695784 50736364 - MGP_C3HHeJ_P0044357 Alcam protein_coding protein_coding MGP_C3HHeJ_T0044358.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50696164 50904233 - MGP_C3HHeJ_P0044358 Alcam protein_coding protein_coding MGP_C3HHeJ_T0044359.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50697885 50714225 - Alcam protein_coding retained_intron MGP_C3HHeJ_T0044360.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50697918 50716279 - Alcam protein_coding retained_intron MGP_C3HHeJ_T0044361.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50713324 50904233 - MGP_C3HHeJ_P0044361 Alcam protein_coding protein_coding MGP_C3HHeJ_T0044362.1 MGP_C3HHeJ_G0022608.1 mouse_genomes_project 16 50746080 50904422 - MGP_C3HHeJ_P0044362 Alcam protein_coding protein_coding MGP_C3HHeJ_T0043342.1 MGP_C3HHeJ_G0022355.1 mouse_genomes_project 16 16104072 16109588 - MGP_C3HHeJ_P0043342 Mrpl40 protein_coding protein_coding MGP_C3HHeJ_T0043343.1 MGP_C3HHeJ_G0022355.1 mouse_genomes_project 16 16104280 16109360 - MGP_C3HHeJ_P0043343 Mrpl40 protein_coding protein_coding MGP_C3HHeJ_T0042714.1 MGP_C3HHeJ_G0022213.1 mouse_genomes_project 16 1535671 1548635 - MGP_C3HHeJ_P0042714 Sept12 protein_coding protein_coding MGP_C3HHeJ_T0043523.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19469415 19585707 - Igf2bp2 protein_coding retained_intron MGP_C3HHeJ_T0043524.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19469427 19500604 - Igf2bp2 protein_coding retained_intron MGP_C3HHeJ_T0043525.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19471146 19585651 - MGP_C3HHeJ_P0043525 Igf2bp2 protein_coding protein_coding MGP_C3HHeJ_T0043526.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19471719 19474051 - Igf2bp2 protein_coding retained_intron MGP_C3HHeJ_T0043527.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19487490 19490591 - Igf2bp2 protein_coding retained_intron MGP_C3HHeJ_T0043528.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19495417 19558568 - Igf2bp2 protein_coding processed_transcript MGP_C3HHeJ_T0043529.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19572857 19585680 - Igf2bp2 protein_coding processed_transcript MGP_C3HHeJ_T0043530.1 MGP_C3HHeJ_G0022397.1 mouse_genomes_project 16 19583568 19585663 - Igf2bp2 protein_coding retained_intron MGP_C3HHeJ_T0042995.1 MGP_C3HHeJ_G0022288.1 mouse_genomes_project 16 13221575 13237689 + MGP_C3HHeJ_P0042995 Pkp2 protein_coding protein_coding MGP_C3HHeJ_T0042996.1 MGP_C3HHeJ_G0022288.1 mouse_genomes_project 16 13221575 13258752 + MGP_C3HHeJ_P0042996 Pkp2 protein_coding protein_coding MGP_C3HHeJ_T0042997.1 MGP_C3HHeJ_G0022288.1 mouse_genomes_project 16 13221575 13282887 + MGP_C3HHeJ_P0042997 Pkp2 protein_coding protein_coding MGP_C3HHeJ_T0044743.1 MGP_C3HHeJ_G0022760.1 mouse_genomes_project 16 90639173 90697502 - MGP_C3HHeJ_P0044743 Urb1 protein_coding protein_coding MGP_C3HHeJ_T0044744.1 MGP_C3HHeJ_G0022760.1 mouse_genomes_project 16 90654666 90660438 - Urb1 protein_coding retained_intron MGP_C3HHeJ_T0044745.1 MGP_C3HHeJ_G0022760.1 mouse_genomes_project 16 90670789 90697502 - Urb1 protein_coding retained_intron MGP_C3HHeJ_T0044746.1 MGP_C3HHeJ_G0022760.1 mouse_genomes_project 16 90687288 90697491 - Urb1 protein_coding retained_intron MGP_C3HHeJ_T0044747.1 MGP_C3HHeJ_G0022760.1 mouse_genomes_project 16 90692068 90697523 - Urb1 protein_coding retained_intron MGP_C3HHeJ_T0044883.1 MGP_C3HHeJ_G0022784.1 mouse_genomes_project 16 92248240 92255022 + MGP_C3HHeJ_P0044883 Kcne2 protein_coding protein_coding MGP_C3HHeJ_T0044884.1 MGP_C3HHeJ_G0022784.1 mouse_genomes_project 16 92252508 92255022 + MGP_C3HHeJ_P0044884 Kcne2 protein_coding protein_coding MGP_C3HHeJ_T0044626.1 MGP_C3HHeJ_G0022702.1 mouse_genomes_project 16 84499881 84526229 + MGP_C3HHeJ_P0044626 Gabpa protein_coding protein_coding MGP_C3HHeJ_T0044627.1 MGP_C3HHeJ_G0022702.1 mouse_genomes_project 16 84500080 84528693 + MGP_C3HHeJ_P0044627 Gabpa protein_coding protein_coding MGP_C3HHeJ_T0044628.1 MGP_C3HHeJ_G0022702.1 mouse_genomes_project 16 84517470 84525343 + Gabpa protein_coding processed_transcript MGP_C3HHeJ_T0044629.1 MGP_C3HHeJ_G0022702.1 mouse_genomes_project 16 84520947 84522486 + Gabpa protein_coding retained_intron MGP_C3HHeJ_T0044630.1 MGP_C3HHeJ_G0022702.1 mouse_genomes_project 16 84524958 84527379 + Gabpa protein_coding processed_transcript MGP_C3HHeJ_T0100325.1 MGP_C3HHeJ_G0038519.1 mouse_genomes_project 16 86629399 86629524 + Gm25715 snoRNA snoRNA MGP_C3HHeJ_T0044887.1 MGP_C3HHeJ_G0022786.1 mouse_genomes_project 16 92275629 92278308 - MGP_C3HHeJ_P0044887 4930563D23Rik protein_coding protein_coding MGP_C3HHeJ_T0043900.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31874141 31992585 - MGP_C3HHeJ_P0043900 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043901.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31874757 31992692 - MGP_C3HHeJ_P0043901 protein_coding protein_coding MGP_C3HHeJ_T0043902.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31875662 31879234 - protein_coding retained_intron MGP_C3HHeJ_T0043903.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31875994 32364261 - MGP_C3HHeJ_P0043903 protein_coding protein_coding MGP_C3HHeJ_T0043904.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31914132 32062210 - MGP_C3HHeJ_P0043904 protein_coding protein_coding MGP_C3HHeJ_T0043905.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31914137 32299950 - MGP_C3HHeJ_P0043905 protein_coding protein_coding MGP_C3HHeJ_T0043906.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31914137 31993795 - MGP_C3HHeJ_P0043906 protein_coding protein_coding MGP_C3HHeJ_T0043907.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31914146 31992733 - MGP_C3HHeJ_P0043907 protein_coding protein_coding MGP_C3HHeJ_T0043908.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 31944960 32493013 - MGP_C3HHeJ_P0043908 protein_coding protein_coding MGP_C3HHeJ_T0043909.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32050976 32430862 - MGP_C3HHeJ_P0043909 protein_coding protein_coding MGP_C3HHeJ_T0043910.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32050977 32164136 - MGP_C3HHeJ_P0043910 protein_coding protein_coding MGP_C3HHeJ_T0043911.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32050987 32430900 - MGP_C3HHeJ_P0043911 protein_coding protein_coding MGP_C3HHeJ_T0043912.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32051047 32163901 - MGP_C3HHeJ_P0043912 protein_coding protein_coding MGP_C3HHeJ_T0043913.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32052352 32164129 - MGP_C3HHeJ_P0043913 protein_coding protein_coding MGP_C3HHeJ_T0043914.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32052419 32430752 - MGP_C3HHeJ_P0043914 protein_coding protein_coding MGP_C3HHeJ_T0043915.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32076897 32163775 - MGP_C3HHeJ_P0043915 protein_coding protein_coding MGP_C3HHeJ_T0043916.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32118518 32163846 - protein_coding retained_intron MGP_C3HHeJ_T0043917.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32145068 32153252 - protein_coding processed_transcript MGP_C3HHeJ_T0043918.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32260180 32266747 - protein_coding processed_transcript MGP_C3HHeJ_T0043919.1 MGP_C3HHeJ_G0022493.1 mouse_genomes_project 16 32429588 32430929 - protein_coding processed_transcript MGP_C3HHeJ_T0000017.1 MGP_C3HHeJ_G0000012.1 mouse_genomes_project 16 16310069 16310521 - MGP_C3HHeJ_P0000017 Iglc3 IG_C_gene IG_C_gene MGP_C3HHeJ_T0010062.1 MGP_C3HHeJ_G0008195.1 mouse_genomes_project 16 54071893 54071960 + Mir5118 miRNA miRNA MGP_C3HHeJ_T0043112.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14385520 14520636 - MGP_C3HHeJ_P0043112 Pi4ka protein_coding protein_coding MGP_C3HHeJ_T0043113.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14385521 14386815 - Pi4ka protein_coding retained_intron MGP_C3HHeJ_T0043114.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14385521 14390133 - Pi4ka protein_coding retained_intron MGP_C3HHeJ_T0043115.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14385521 14413369 - MGP_C3HHeJ_P0043115 Pi4ka protein_coding protein_coding MGP_C3HHeJ_T0043116.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14385521 14520215 - MGP_C3HHeJ_P0043116 Pi4ka protein_coding protein_coding MGP_C3HHeJ_T0043117.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14385522 14387245 - Pi4ka protein_coding retained_intron MGP_C3HHeJ_T0043118.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14387991 14389295 - Pi4ka protein_coding retained_intron MGP_C3HHeJ_T0043119.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14402845 14412992 - MGP_C3HHeJ_P0043119 Pi4ka protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043120.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14413480 14431856 - MGP_C3HHeJ_P0043120 Pi4ka protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043121.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14418804 14458236 - MGP_C3HHeJ_P0043121 Pi4ka protein_coding protein_coding MGP_C3HHeJ_T0043122.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14429338 14458198 - Pi4ka protein_coding retained_intron MGP_C3HHeJ_T0043125.1 MGP_C3HHeJ_G0022308.1 mouse_genomes_project 16 14473351 14520215 - Pi4ka protein_coding retained_intron MGP_C3HHeJ_T0044770.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90909737 90940675 - MGP_C3HHeJ_P0044770 Paxbp1 protein_coding protein_coding MGP_C3HHeJ_T0044771.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90910616 90940296 - MGP_C3HHeJ_P0044771 Paxbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044772.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90912549 90915404 - Paxbp1 protein_coding processed_transcript MGP_C3HHeJ_T0044773.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90920983 90926993 - Paxbp1 protein_coding retained_intron MGP_C3HHeJ_T0044774.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90921728 90926691 - MGP_C3HHeJ_P0044774 Paxbp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044775.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90921847 90923811 - Paxbp1 protein_coding retained_intron MGP_C3HHeJ_T0044776.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90926625 90931069 - Paxbp1 protein_coding retained_intron MGP_C3HHeJ_T0044777.1 MGP_C3HHeJ_G0022764.1 mouse_genomes_project 16 90927740 90940486 - Paxbp1 protein_coding processed_transcript MGP_C3HHeJ_T0013024.1 MGP_C3HHeJ_G0011128.1 mouse_genomes_project 16 36652026 36653758 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042723.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1560294 1565793 - MGP_C3HHeJ_P0042723 Rogdi protein_coding protein_coding MGP_C3HHeJ_T0042724.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1560294 1565803 - MGP_C3HHeJ_P0042724 Rogdi protein_coding protein_coding MGP_C3HHeJ_T0042725.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1560319 1565793 - MGP_C3HHeJ_P0042725 Rogdi protein_coding protein_coding MGP_C3HHeJ_T0042726.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1560549 1562931 - Rogdi protein_coding retained_intron MGP_C3HHeJ_T0042727.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1560788 1562388 - Rogdi protein_coding retained_intron MGP_C3HHeJ_T0042728.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1562177 1564095 - Rogdi protein_coding retained_intron MGP_C3HHeJ_T0042729.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1562314 1564011 - Rogdi protein_coding retained_intron MGP_C3HHeJ_T0042730.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1563126 1565761 - MGP_C3HHeJ_P0042730 Rogdi protein_coding protein_coding MGP_C3HHeJ_T0042731.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1563978 1565829 - Rogdi protein_coding retained_intron MGP_C3HHeJ_T0042732.1 MGP_C3HHeJ_G0022215.1 mouse_genomes_project 16 1564445 1565812 - Rogdi protein_coding retained_intron MGP_C3HHeJ_T0043494.1 MGP_C3HHeJ_G0022387.1 mouse_genomes_project 16 18032477 18041735 + MGP_C3HHeJ_P0043494 Chrd protein_coding protein_coding MGP_C3HHeJ_T0043495.1 MGP_C3HHeJ_G0022387.1 mouse_genomes_project 16 18032477 18037503 + MGP_C3HHeJ_P0043495 Chrd protein_coding protein_coding MGP_C3HHeJ_T0043496.1 MGP_C3HHeJ_G0022387.1 mouse_genomes_project 16 18032477 18041735 + MGP_C3HHeJ_P0043496 Chrd protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043497.1 MGP_C3HHeJ_G0022387.1 mouse_genomes_project 16 18035556 18041733 + Chrd protein_coding retained_intron MGP_C3HHeJ_T0100304.1 MGP_C3HHeJ_G0038498.1 mouse_genomes_project 16 44592811 44592943 + Gm26297 snoRNA snoRNA MGP_C3HHeJ_T0042792.1 MGP_C3HHeJ_G0022234.1 mouse_genomes_project 16 6299421 6741926 - MGP_C3HHeJ_P0042792 Grin2a protein_coding protein_coding MGP_C3HHeJ_T0042793.1 MGP_C3HHeJ_G0022234.1 mouse_genomes_project 16 6310200 6741585 - MGP_C3HHeJ_P0042793 Grin2a protein_coding protein_coding MGP_C3HHeJ_T0042794.1 MGP_C3HHeJ_G0022234.1 mouse_genomes_project 16 6310286 6739532 - MGP_C3HHeJ_P0042794 Grin2a protein_coding protein_coding MGP_C3HHeJ_T0042795.1 MGP_C3HHeJ_G0022234.1 mouse_genomes_project 16 6504514 6540465 - Grin2a protein_coding processed_transcript MGP_C3HHeJ_T0042796.1 MGP_C3HHeJ_G0022234.1 mouse_genomes_project 16 6738653 6742563 - Grin2a protein_coding retained_intron MGP_C3HHeJ_T0042797.1 MGP_C3HHeJ_G0022234.1 mouse_genomes_project 16 6738653 6741273 - Grin2a protein_coding retained_intron MGP_C3HHeJ_T0042879.1 MGP_C3HHeJ_G0022256.1 mouse_genomes_project 16 8061343 8098960 - MGP_C3HHeJ_P0042879 Gspt1 protein_coding protein_coding MGP_C3HHeJ_T0042880.1 MGP_C3HHeJ_G0022256.1 mouse_genomes_project 16 8062103 8098899 - MGP_C3HHeJ_P0042880 Gspt1 protein_coding protein_coding MGP_C3HHeJ_T0042881.1 MGP_C3HHeJ_G0022256.1 mouse_genomes_project 16 8062452 8066553 - MGP_C3HHeJ_P0042881 Gspt1 protein_coding protein_coding MGP_C3HHeJ_T0042882.1 MGP_C3HHeJ_G0022256.1 mouse_genomes_project 16 8064638 8071052 - Gspt1 protein_coding retained_intron MGP_C3HHeJ_T0042883.1 MGP_C3HHeJ_G0022256.1 mouse_genomes_project 16 8073439 8083373 - Gspt1 protein_coding retained_intron MGP_C3HHeJ_T0043984.1 MGP_C3HHeJ_G0022520.1 mouse_genomes_project 16 34673316 34735878 - MGP_C3HHeJ_P0043984 Cd86 protein_coding protein_coding MGP_C3HHeJ_T0043985.1 MGP_C3HHeJ_G0022520.1 mouse_genomes_project 16 34673344 34673967 - Cd86 protein_coding processed_transcript MGP_C3HHeJ_T0043986.1 MGP_C3HHeJ_G0022520.1 mouse_genomes_project 16 34690160 34712253 - MGP_C3HHeJ_P0043986 Cd86 protein_coding protein_coding MGP_C3HHeJ_T0043987.1 MGP_C3HHeJ_G0022520.1 mouse_genomes_project 16 34730620 34735882 - Cd86 protein_coding processed_transcript MGP_C3HHeJ_T0013013.1 MGP_C3HHeJ_G0011117.1 mouse_genomes_project 16 26962983 26963377 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044681.1 MGP_C3HHeJ_G0022722.1 mouse_genomes_project 16 88553984 88554732 + MGP_C3HHeJ_P0044681 Krtap13-1 protein_coding protein_coding MGP_C3HHeJ_T0042912.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10600494 10633631 + MGP_C3HHeJ_P0042912 Bfar protein_coding protein_coding MGP_C3HHeJ_T0042914.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10600586 10629308 + MGP_C3HHeJ_P0042914 Bfar protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042915.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10600656 10633621 + MGP_C3HHeJ_P0042915 Bfar protein_coding protein_coding MGP_C3HHeJ_T0042916.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10600698 10615477 + Bfar protein_coding retained_intron MGP_C3HHeJ_T0042917.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10614767 10617590 + Bfar protein_coding retained_intron MGP_C3HHeJ_T0042918.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10615091 10618065 + Bfar protein_coding retained_intron MGP_C3HHeJ_T0042919.1 MGP_C3HHeJ_G0022265.1 mouse_genomes_project 16 10622647 10627525 + Bfar protein_coding retained_intron MGP_C3HHeJ_T0043229.1 MGP_C3HHeJ_G0022332.1 mouse_genomes_project 16 15145052 15145525 + MGP_C3HHeJ_P0043229 protein_coding protein_coding MGP_C3HHeJ_T0043558.1 MGP_C3HHeJ_G0022408.1 mouse_genomes_project 16 20548108 20607706 + MGP_C3HHeJ_P0043558 protein_coding protein_coding MGP_C3HHeJ_T0043559.1 MGP_C3HHeJ_G0022408.1 mouse_genomes_project 16 20555933 20589771 + protein_coding processed_transcript MGP_C3HHeJ_T0044530.1 MGP_C3HHeJ_G0022669.1 mouse_genomes_project 16 61775346 61852346 + MGP_C3HHeJ_P0044530 Pros1 protein_coding protein_coding MGP_C3HHeJ_T0044531.1 MGP_C3HHeJ_G0022669.1 mouse_genomes_project 16 61819676 61821877 + Pros1 protein_coding retained_intron MGP_C3HHeJ_T0044532.1 MGP_C3HHeJ_G0022669.1 mouse_genomes_project 16 61844466 61851390 + Pros1 protein_coding processed_transcript MGP_C3HHeJ_T0043876.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31398459 31548768 + MGP_C3HHeJ_P0043876 Slc12a8 protein_coding protein_coding MGP_C3HHeJ_T0043877.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31399409 31548605 + MGP_C3HHeJ_P0043877 Slc12a8 protein_coding protein_coding MGP_C3HHeJ_T0043878.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31399460 31549495 + MGP_C3HHeJ_P0043878 Slc12a8 protein_coding protein_coding MGP_C3HHeJ_T0043879.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31399667 31548768 + MGP_C3HHeJ_P0043879 Slc12a8 protein_coding protein_coding MGP_C3HHeJ_T0043880.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31480212 31549495 + MGP_C3HHeJ_P0043880 Slc12a8 protein_coding protein_coding MGP_C3HHeJ_T0043881.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31480277 31548766 + MGP_C3HHeJ_P0043881 Slc12a8 protein_coding protein_coding MGP_C3HHeJ_T0043882.1 MGP_C3HHeJ_G0022488.1 mouse_genomes_project 16 31501026 31510099 + Slc12a8 protein_coding processed_transcript MGP_C3HHeJ_T0012976.1 MGP_C3HHeJ_G0011080.1 mouse_genomes_project 16 516921 516999 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003578.1 MGP_C3HHeJ_G0003240.1 mouse_genomes_project 16 1559937 1565694 + Gm42477 antisense antisense MGP_C3HHeJ_T0100305.1 MGP_C3HHeJ_G0038499.1 mouse_genomes_project 16 50540969 50541102 - Gm23513 snoRNA snoRNA MGP_C3HHeJ_T0044499.1 MGP_C3HHeJ_G0022659.1 mouse_genomes_project 16 58099325 58100330 - MGP_C3HHeJ_P0044499 Olfr206 protein_coding protein_coding MGP_C3HHeJ_T0044732.1 MGP_C3HHeJ_G0022755.1 mouse_genomes_project 16 90065322 90070903 + MGP_C3HHeJ_P0044732 Sod1 protein_coding protein_coding MGP_C3HHeJ_T0006768.1 MGP_C3HHeJ_G0005577.1 mouse_genomes_project 16 42649963 42653014 + Gm26732 lincRNA lincRNA MGP_C3HHeJ_T0044847.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669123 91812270 + MGP_C3HHeJ_P0044847 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044848.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669195 91860952 + MGP_C3HHeJ_P0044848 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044849.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669195 91813711 + MGP_C3HHeJ_P0044849 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044850.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669195 91867504 + MGP_C3HHeJ_P0044850 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044851.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669212 91771802 + MGP_C3HHeJ_P0044851 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044852.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669213 91813715 + MGP_C3HHeJ_P0044852 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044853.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669215 91813713 + MGP_C3HHeJ_P0044853 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044854.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669308 91721632 + Itsn1 protein_coding retained_intron MGP_C3HHeJ_T0044855.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669413 91733102 + Itsn1 protein_coding retained_intron MGP_C3HHeJ_T0044856.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91669434 91812557 + MGP_C3HHeJ_P0044856 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044857.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91721414 91758299 + MGP_C3HHeJ_P0044857 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044858.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91723358 91767767 + Itsn1 protein_coding processed_transcript MGP_C3HHeJ_T0044859.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91744470 91756594 + Itsn1 protein_coding processed_transcript MGP_C3HHeJ_T0044860.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91744484 91751968 + Itsn1 protein_coding retained_intron MGP_C3HHeJ_T0044861.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91756502 91767354 + Itsn1 protein_coding processed_transcript MGP_C3HHeJ_T0044862.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91766993 91767730 + Itsn1 protein_coding retained_intron MGP_C3HHeJ_T0044863.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91779153 91793354 + Itsn1 protein_coding retained_intron MGP_C3HHeJ_T0044864.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91779242 91795298 + MGP_C3HHeJ_P0044864 Itsn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044865.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91782082 91795298 + MGP_C3HHeJ_P0044865 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044866.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91795848 91805364 + MGP_C3HHeJ_P0044866 Itsn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044867.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91804063 91813407 + Itsn1 protein_coding retained_intron MGP_C3HHeJ_T0044868.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91819533 91838008 + Itsn1 protein_coding processed_transcript MGP_C3HHeJ_T0044869.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91831565 91856236 + MGP_C3HHeJ_P0044869 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044870.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91845733 91856259 + MGP_C3HHeJ_P0044870 Itsn1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044871.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91845735 91856236 + MGP_C3HHeJ_P0044871 Itsn1 protein_coding protein_coding MGP_C3HHeJ_T0044872.1 MGP_C3HHeJ_G0022781.1 mouse_genomes_project 16 91858922 91862124 + Itsn1 protein_coding processed_transcript MGP_C3HHeJ_T0042735.1 MGP_C3HHeJ_G0022217.1 mouse_genomes_project 16 1605173 1642158 + MGP_C3HHeJ_P0042735 Ubn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044685.1 MGP_C3HHeJ_G0022726.1 mouse_genomes_project 16 88645466 88652622 - MGP_C3HHeJ_P0044685 Krtap14 protein_coding protein_coding MGP_C3HHeJ_T0044687.1 MGP_C3HHeJ_G0022726.1 mouse_genomes_project 16 88652089 88652945 - MGP_C3HHeJ_P0044687 Krtap14 protein_coding protein_coding MGP_C3HHeJ_T0044586.1 MGP_C3HHeJ_G0022688.1 mouse_genomes_project 16 75651994 75739198 - MGP_C3HHeJ_P0044586 Nrip1 protein_coding protein_coding MGP_C3HHeJ_T0044587.1 MGP_C3HHeJ_G0022688.1 mouse_genomes_project 16 75655456 75738420 - MGP_C3HHeJ_P0044587 Nrip1 protein_coding protein_coding MGP_C3HHeJ_T0044588.1 MGP_C3HHeJ_G0022688.1 mouse_genomes_project 16 75659240 75688979 - MGP_C3HHeJ_P0044588 Nrip1 protein_coding protein_coding MGP_C3HHeJ_T0044589.1 MGP_C3HHeJ_G0022688.1 mouse_genomes_project 16 75693431 75738408 - Nrip1 protein_coding retained_intron MGP_C3HHeJ_T0044590.1 MGP_C3HHeJ_G0022688.1 mouse_genomes_project 16 75693643 75738411 - Nrip1 protein_coding retained_intron MGP_C3HHeJ_T0044591.1 MGP_C3HHeJ_G0022688.1 mouse_genomes_project 16 75716721 75738420 - Nrip1 protein_coding retained_intron MGP_C3HHeJ_T0042840.1 MGP_C3HHeJ_G0022249.1 mouse_genomes_project 16 7630428 7630508 + MGP_C3HHeJ_P0042840 Gm11172 protein_coding protein_coding MGP_C3HHeJ_T0044709.1 MGP_C3HHeJ_G0022746.1 mouse_genomes_project 16 88995293 88995452 + MGP_C3HHeJ_P0044709 Gm7735 protein_coding protein_coding MGP_C3HHeJ_T0101768.1 MGP_C3HHeJ_G0039733.1 mouse_genomes_project 16 83340 84274 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0044018.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 34956440 34968905 + Golgb1 protein_coding processed_transcript MGP_C3HHeJ_T0044019.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 34956441 34970706 + MGP_C3HHeJ_P0044019 Golgb1 protein_coding protein_coding MGP_C3HHeJ_T0044020.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 34956441 34956939 + MGP_C3HHeJ_P0044020 Golgb1 protein_coding protein_coding MGP_C3HHeJ_T0044021.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 34956468 35014396 + MGP_C3HHeJ_P0044021 Golgb1 protein_coding protein_coding MGP_C3HHeJ_T0044022.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 34956502 34970708 + MGP_C3HHeJ_P0044022 Golgb1 protein_coding protein_coding MGP_C3HHeJ_T0044023.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 34967440 35014396 + MGP_C3HHeJ_P0044023 Golgb1 protein_coding protein_coding MGP_C3HHeJ_T0044024.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 35005767 35009682 + Golgb1 protein_coding retained_intron MGP_C3HHeJ_T0044025.1 MGP_C3HHeJ_G0022525.1 mouse_genomes_project 16 35012710 35013384 + Golgb1 protein_coding retained_intron MGP_C3HHeJ_T0003609.1 MGP_C3HHeJ_G0003265.1 mouse_genomes_project 16 36711759 36715737 - Gm17103 antisense antisense MGP_C3HHeJ_T0011322.1 MGP_C3HHeJ_G0009455.1 mouse_genomes_project 16 93662395 93662676 + Gm22344 misc_RNA misc_RNA MGP_C3HHeJ_T0000941.1 MGP_C3HHeJ_G0000879.1 mouse_genomes_project 16 77035974 77039029 + TEC TEC MGP_C3HHeJ_T0099050.1 MGP_C3HHeJ_G0037244.1 mouse_genomes_project 16 36094792 36094932 + Gm25140 snRNA snRNA MGP_C3HHeJ_T0012995.1 MGP_C3HHeJ_G0011099.1 mouse_genomes_project 16 14162753 14163446 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012996.1 MGP_C3HHeJ_G0011100.1 mouse_genomes_project 16 14843046 14843484 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044700.1 MGP_C3HHeJ_G0022739.1 mouse_genomes_project 16 88872334 88872866 - MGP_C3HHeJ_P0044700 Gm10228 protein_coding protein_coding MGP_C3HHeJ_T0044911.1 MGP_C3HHeJ_G0022794.1 mouse_genomes_project 16 93729687 93837210 + MGP_C3HHeJ_P0044911 Dopey2 protein_coding protein_coding MGP_C3HHeJ_T0044912.1 MGP_C3HHeJ_G0022794.1 mouse_genomes_project 16 93729883 93837213 + MGP_C3HHeJ_P0044912 Dopey2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043955.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33943015 33971890 + Kpna1 protein_coding retained_intron MGP_C3HHeJ_T0043956.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33950995 34004720 + MGP_C3HHeJ_P0043956 Kpna1 protein_coding protein_coding MGP_C3HHeJ_T0043957.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33951005 33973676 + Kpna1 protein_coding retained_intron MGP_C3HHeJ_T0043958.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33951034 33987264 + MGP_C3HHeJ_P0043958 Kpna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043959.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33951262 33980880 + MGP_C3HHeJ_P0043959 Kpna1 protein_coding protein_coding MGP_C3HHeJ_T0043960.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33968638 34001494 + MGP_C3HHeJ_P0043960 Kpna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043961.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33968704 33989622 + MGP_C3HHeJ_P0043961 Kpna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043962.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33981763 34002718 + MGP_C3HHeJ_P0043962 Kpna1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043963.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33987363 34001454 + MGP_C3HHeJ_P0043963 Kpna1 protein_coding protein_coding MGP_C3HHeJ_T0043964.1 MGP_C3HHeJ_G0022507.1 mouse_genomes_project 16 33989620 33999348 + Kpna1 protein_coding retained_intron MGP_C3HHeJ_T0000936.1 MGP_C3HHeJ_G0000874.1 mouse_genomes_project 16 76860636 76864166 + TEC TEC MGP_C3HHeJ_T0043050.1 MGP_C3HHeJ_G0022296.1 mouse_genomes_project 16 13956671 13990255 + MGP_C3HHeJ_P0043050 Ppm1f protein_coding protein_coding MGP_C3HHeJ_T0043051.1 MGP_C3HHeJ_G0022296.1 mouse_genomes_project 16 13956776 13975361 + Ppm1f protein_coding processed_transcript MGP_C3HHeJ_T0043373.1 MGP_C3HHeJ_G0022368.1 mouse_genomes_project 16 17410158 17503882 + MGP_C3HHeJ_P0043373 Yeats2 protein_coding protein_coding MGP_C3HHeJ_T0043374.1 MGP_C3HHeJ_G0022368.1 mouse_genomes_project 16 17410158 17503882 + MGP_C3HHeJ_P0043374 Yeats2 protein_coding protein_coding MGP_C3HHeJ_T0044215.1 MGP_C3HHeJ_G0022570.1 mouse_genomes_project 16 42811114 42885763 - MGP_C3HHeJ_P0044215 Boc protein_coding protein_coding MGP_C3HHeJ_T0044216.1 MGP_C3HHeJ_G0022570.1 mouse_genomes_project 16 42811118 42885790 - MGP_C3HHeJ_P0044216 Boc protein_coding protein_coding MGP_C3HHeJ_T0044217.1 MGP_C3HHeJ_G0022570.1 mouse_genomes_project 16 42811121 42848292 - MGP_C3HHeJ_P0044217 Boc protein_coding unknown_likely_coding MGP_C3HHeJ_T0100322.1 MGP_C3HHeJ_G0038516.1 mouse_genomes_project 16 79606715 79606831 + Gm23083 snoRNA snoRNA MGP_C3HHeJ_T0006790.1 MGP_C3HHeJ_G0005591.1 mouse_genomes_project 16 87579735 87589152 + 2810407A14Rik lincRNA lincRNA MGP_C3HHeJ_T0006791.1 MGP_C3HHeJ_G0005591.1 mouse_genomes_project 16 87583295 87637507 + 2810407A14Rik lincRNA lincRNA MGP_C3HHeJ_T0043123.1 MGP_C3HHeJ_G0022309.1 mouse_genomes_project 16 14438741 14450946 + MGP_C3HHeJ_P0043123 Serpind1 protein_coding protein_coding MGP_C3HHeJ_T0043124.1 MGP_C3HHeJ_G0022309.1 mouse_genomes_project 16 14438753 14450945 + MGP_C3HHeJ_P0043124 Serpind1 protein_coding protein_coding MGP_C3HHeJ_T0099041.1 MGP_C3HHeJ_G0037235.1 mouse_genomes_project 16 34111387 34111490 - Gm23080 snRNA snRNA MGP_C3HHeJ_T0100315.1 MGP_C3HHeJ_G0038509.1 mouse_genomes_project 16 67580848 67580955 - Gm24681 snoRNA snoRNA MGP_C3HHeJ_T0010028.1 MGP_C3HHeJ_G0008161.1 mouse_genomes_project 16 10385056 10385157 - Mir6365 miRNA miRNA MGP_C3HHeJ_T0043861.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30899951 30904426 + MGP_C3HHeJ_P0043861 Rpl35a protein_coding protein_coding MGP_C3HHeJ_T0043862.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30899964 30904413 + MGP_C3HHeJ_P0043862 Rpl35a protein_coding protein_coding MGP_C3HHeJ_T0043863.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30899980 30904412 + Rpl35a protein_coding retained_intron MGP_C3HHeJ_T0043864.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30900022 30901779 + Rpl35a protein_coding retained_intron MGP_C3HHeJ_T0043865.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30900025 30904402 + MGP_C3HHeJ_P0043865 Rpl35a protein_coding protein_coding MGP_C3HHeJ_T0043866.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30900304 30904412 + MGP_C3HHeJ_P0043866 Rpl35a protein_coding protein_coding MGP_C3HHeJ_T0043867.1 MGP_C3HHeJ_G0022483.1 mouse_genomes_project 16 30900516 30904393 + MGP_C3HHeJ_P0043867 Rpl35a protein_coding protein_coding MGP_C3HHeJ_T0043927.1 MGP_C3HHeJ_G0022499.1 mouse_genomes_project 16 33255581 33308740 - MGP_C3HHeJ_P0043927 Sec22a protein_coding protein_coding MGP_C3HHeJ_T0043928.1 MGP_C3HHeJ_G0022499.1 mouse_genomes_project 16 33258520 33292565 - Sec22a protein_coding processed_transcript MGP_C3HHeJ_T0043929.1 MGP_C3HHeJ_G0022499.1 mouse_genomes_project 16 33293735 33308637 - Sec22a protein_coding retained_intron MGP_C3HHeJ_T0043930.1 MGP_C3HHeJ_G0022499.1 mouse_genomes_project 16 33305494 33308674 - Sec22a protein_coding retained_intron MGP_C3HHeJ_T0043931.1 MGP_C3HHeJ_G0022499.1 mouse_genomes_project 16 33305866 33308669 - Sec22a protein_coding processed_transcript MGP_C3HHeJ_T0099065.1 MGP_C3HHeJ_G0037259.1 mouse_genomes_project 16 80172845 80172944 + Gm24773 snRNA snRNA MGP_C3HHeJ_T0042636.1 MGP_C3HHeJ_G0022194.1 mouse_genomes_project 16 544037 582845 - MGP_C3HHeJ_P0042636 Trap1 protein_coding protein_coding MGP_C3HHeJ_T0042637.1 MGP_C3HHeJ_G0022194.1 mouse_genomes_project 16 544206 548765 - Trap1 protein_coding processed_transcript MGP_C3HHeJ_T0042638.1 MGP_C3HHeJ_G0022194.1 mouse_genomes_project 16 560692 582793 - MGP_C3HHeJ_P0042638 Trap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042639.1 MGP_C3HHeJ_G0022194.1 mouse_genomes_project 16 570052 582845 - Trap1 protein_coding retained_intron MGP_C3HHeJ_T0044322.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47302791 47317088 - Dzip3 protein_coding retained_intron MGP_C3HHeJ_T0044323.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47302791 47365600 - MGP_C3HHeJ_P0044323 Dzip3 protein_coding protein_coding MGP_C3HHeJ_T0044324.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47302793 47316996 - Dzip3 protein_coding retained_intron MGP_C3HHeJ_T0044325.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47304438 47365376 - MGP_C3HHeJ_P0044325 Dzip3 protein_coding protein_coding MGP_C3HHeJ_T0044326.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47305426 47308311 - MGP_C3HHeJ_P0044326 Dzip3 protein_coding protein_coding MGP_C3HHeJ_T0044327.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47305646 47309856 - Dzip3 protein_coding retained_intron MGP_C3HHeJ_T0044328.1 MGP_C3HHeJ_G0022600.1 mouse_genomes_project 16 47323932 47332418 - Dzip3 protein_coding retained_intron MGP_C3HHeJ_T0099056.1 MGP_C3HHeJ_G0037250.1 mouse_genomes_project 16 49339524 49339631 - Gm24925 snRNA snRNA MGP_C3HHeJ_T0098066.1 MGP_C3HHeJ_G0036278.1 mouse_genomes_project 16 84483048 84483146 + Gm25908 rRNA rRNA MGP_C3HHeJ_T0000931.1 MGP_C3HHeJ_G0000870.1 mouse_genomes_project 16 76780116 76783222 + TEC TEC MGP_C3HHeJ_T0000932.1 MGP_C3HHeJ_G0000870.1 mouse_genomes_project 16 76780933 76781295 + TEC pseudogene MGP_C3HHeJ_T0044605.1 MGP_C3HHeJ_G0022697.1 mouse_genomes_project 16 78370588 78507115 - MGP_C3HHeJ_P0044605 Tmprss15 protein_coding protein_coding MGP_C3HHeJ_T0044606.1 MGP_C3HHeJ_G0022697.1 mouse_genomes_project 16 78371044 78507120 - MGP_C3HHeJ_P0044606 Tmprss15 protein_coding protein_coding MGP_C3HHeJ_T0011319.1 MGP_C3HHeJ_G0009452.1 mouse_genomes_project 16 68057981 68058267 + Gm23591 misc_RNA misc_RNA MGP_C3HHeJ_T0043872.1 MGP_C3HHeJ_G0022485.1 mouse_genomes_project 16 31037881 31101706 + MGP_C3HHeJ_P0043872 Osbpl11 protein_coding protein_coding MGP_C3HHeJ_T0011312.1 MGP_C3HHeJ_G0009445.1 mouse_genomes_project 16 20968379 20968693 - Gm23430 misc_RNA misc_RNA MGP_C3HHeJ_T0013004.1 MGP_C3HHeJ_G0011108.1 mouse_genomes_project 16 17835119 17835402 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010045.1 MGP_C3HHeJ_G0008178.1 mouse_genomes_project 16 20641270 20641376 + miRNA miRNA MGP_C3HHeJ_T0017270.1 MGP_C3HHeJ_G0015078.1 mouse_genomes_project 16 20706610 20760840 + B630019A10Rik processed_transcript processed_transcript MGP_C3HHeJ_T0000943.1 MGP_C3HHeJ_G0000881.1 mouse_genomes_project 16 77075224 77077357 + TEC TEC MGP_C3HHeJ_T0000924.1 MGP_C3HHeJ_G0000863.1 mouse_genomes_project 16 38308738 38308781 + TEC TEC MGP_C3HHeJ_T0044788.1 MGP_C3HHeJ_G0022770.1 mouse_genomes_project 16 91300059 91329860 + MGP_C3HHeJ_P0044788 Gm21970 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044789.1 MGP_C3HHeJ_G0022770.1 mouse_genomes_project 16 91300059 91329860 + MGP_C3HHeJ_P0044789 Gm21970 protein_coding protein_coding MGP_C3HHeJ_T0043920.1 MGP_C3HHeJ_G0022494.1 mouse_genomes_project 16 32566295 32594037 + MGP_C3HHeJ_P0043920 Ropn1 protein_coding protein_coding MGP_C3HHeJ_T0043921.1 MGP_C3HHeJ_G0022494.1 mouse_genomes_project 16 32567562 32595456 + MGP_C3HHeJ_P0043921 Ropn1 protein_coding protein_coding MGP_C3HHeJ_T0042820.1 MGP_C3HHeJ_G0022242.1 mouse_genomes_project 16 7305220 7346486 - MGP_C3HHeJ_P0042820 Dexi protein_coding protein_coding MGP_C3HHeJ_T0042821.1 MGP_C3HHeJ_G0022242.1 mouse_genomes_project 16 7333695 7335297 - Dexi protein_coding processed_transcript MGP_C3HHeJ_T0042822.1 MGP_C3HHeJ_G0022242.1 mouse_genomes_project 16 7333695 7346486 - MGP_C3HHeJ_P0042822 Dexi protein_coding protein_coding MGP_C3HHeJ_T0013060.1 MGP_C3HHeJ_G0011164.1 mouse_genomes_project 16 94675452 94675663 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043944.1 MGP_C3HHeJ_G0022504.1 mouse_genomes_project 16 33789686 33833781 - MGP_C3HHeJ_P0043944 Parp14 protein_coding protein_coding MGP_C3HHeJ_T0043945.1 MGP_C3HHeJ_G0022504.1 mouse_genomes_project 16 33814632 33833626 - Parp14 protein_coding retained_intron MGP_C3HHeJ_T0043946.1 MGP_C3HHeJ_G0022504.1 mouse_genomes_project 16 33828169 33833626 - Parp14 protein_coding retained_intron MGP_C3HHeJ_T0101144.1 MGP_C3HHeJ_G0039306.1 mouse_genomes_project 16 742226 745006 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101145.1 MGP_C3HHeJ_G0039306.1 mouse_genomes_project 16 743293 744899 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0010077.1 MGP_C3HHeJ_G0008210.1 mouse_genomes_project 16 91456675 91456777 - Mir6367 miRNA miRNA MGP_C3HHeJ_T0043290.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15616988 15672679 + MGP_C3HHeJ_P0043290 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043291.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617021 15672685 + MGP_C3HHeJ_P0043291 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043292.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617021 15672682 + MGP_C3HHeJ_P0043292 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043293.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617042 15650078 + MGP_C3HHeJ_P0043293 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043294.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617042 15672679 + MGP_C3HHeJ_P0043294 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043295.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617042 15672679 + MGP_C3HHeJ_P0043295 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043296.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617045 15672683 + MGP_C3HHeJ_P0043296 Txnrd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043297.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617049 15672682 + MGP_C3HHeJ_P0043297 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043298.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15617066 15631007 + MGP_C3HHeJ_P0043298 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043299.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15619301 15631005 + MGP_C3HHeJ_P0043299 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043300.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15619529 15636659 + MGP_C3HHeJ_P0043300 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043301.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15634253 15635902 + MGP_C3HHeJ_P0043301 Txnrd2 protein_coding protein_coding MGP_C3HHeJ_T0043302.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15645648 15668301 + Txnrd2 protein_coding processed_transcript MGP_C3HHeJ_T0043303.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15645654 15668347 + Txnrd2 protein_coding processed_transcript MGP_C3HHeJ_T0043304.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15665432 15668310 + Txnrd2 protein_coding processed_transcript MGP_C3HHeJ_T0043305.1 MGP_C3HHeJ_G0022344.1 mouse_genomes_project 16 15665462 15668299 + Txnrd2 protein_coding processed_transcript MGP_C3HHeJ_T0043323.1 MGP_C3HHeJ_G0022350.1 mouse_genomes_project 16 16000600 16002014 + MGP_C3HHeJ_P0043323 Cldn5 protein_coding protein_coding MGP_C3HHeJ_T0006753.1 MGP_C3HHeJ_G0005562.1 mouse_genomes_project 16 19238812 19241138 - Gm26744 lincRNA lincRNA MGP_C3HHeJ_T0044748.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90715664 90718546 + Eva1c protein_coding processed_transcript MGP_C3HHeJ_T0044749.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90715664 90798382 + MGP_C3HHeJ_P0044749 Eva1c protein_coding protein_coding MGP_C3HHeJ_T0044750.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90719745 90798796 + MGP_C3HHeJ_P0044750 Eva1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044751.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90719804 90798340 + MGP_C3HHeJ_P0044751 Eva1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044752.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90720050 90798382 + MGP_C3HHeJ_P0044752 Eva1c protein_coding protein_coding MGP_C3HHeJ_T0044753.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90720050 90798382 + MGP_C3HHeJ_P0044753 Eva1c protein_coding protein_coding MGP_C3HHeJ_T0044754.1 MGP_C3HHeJ_G0022761.1 mouse_genomes_project 16 90735319 90781357 + MGP_C3HHeJ_P0044754 Eva1c protein_coding protein_coding MGP_C3HHeJ_T0043134.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14633393 14651835 + MGP_C3HHeJ_P0043134 Lztr1 protein_coding protein_coding MGP_C3HHeJ_T0043135.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14633673 14651833 + MGP_C3HHeJ_P0043135 Lztr1 protein_coding protein_coding MGP_C3HHeJ_T0043136.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14633678 14649463 + Lztr1 protein_coding retained_intron MGP_C3HHeJ_T0043137.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14633678 14636931 + Lztr1 protein_coding retained_intron MGP_C3HHeJ_T0043138.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14633917 14640719 + Lztr1 protein_coding processed_transcript MGP_C3HHeJ_T0043139.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14635767 14645659 + Lztr1 protein_coding processed_transcript MGP_C3HHeJ_T0043140.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14640495 14644180 + Lztr1 protein_coding processed_transcript MGP_C3HHeJ_T0043141.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14642733 14645178 + Lztr1 protein_coding retained_intron MGP_C3HHeJ_T0043142.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14645567 14651833 + MGP_C3HHeJ_P0043142 Lztr1 protein_coding protein_coding MGP_C3HHeJ_T0043143.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14647292 14648867 + Lztr1 protein_coding retained_intron MGP_C3HHeJ_T0043144.1 MGP_C3HHeJ_G0022313.1 mouse_genomes_project 16 14648709 14651273 + Lztr1 protein_coding retained_intron MGP_C3HHeJ_T0043266.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15487102 15510503 - MGP_C3HHeJ_P0043266 Tango2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043267.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15487104 15529938 - MGP_C3HHeJ_P0043267 Tango2 protein_coding protein_coding MGP_C3HHeJ_T0043268.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15487500 15490423 - Tango2 protein_coding retained_intron MGP_C3HHeJ_T0043269.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15494264 15497731 - Tango2 protein_coding processed_transcript MGP_C3HHeJ_T0043270.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15497057 15499306 - Tango2 protein_coding retained_intron MGP_C3HHeJ_T0043271.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15497165 15534082 - MGP_C3HHeJ_P0043271 Tango2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043272.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15497173 15529913 - MGP_C3HHeJ_P0043272 Tango2 protein_coding protein_coding MGP_C3HHeJ_T0043273.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15498696 15510504 - Tango2 protein_coding retained_intron MGP_C3HHeJ_T0043274.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15502340 15510504 - Tango2 protein_coding retained_intron MGP_C3HHeJ_T0043275.1 MGP_C3HHeJ_G0022341.1 mouse_genomes_project 16 15506903 15534062 - Tango2 protein_coding retained_intron MGP_C3HHeJ_T0044497.1 MGP_C3HHeJ_G0022657.1 mouse_genomes_project 16 58067973 58070036 - MGP_C3HHeJ_P0044497 protein_coding protein_coding MGP_C3HHeJ_T0042652.1 MGP_C3HHeJ_G0022197.1 mouse_genomes_project 16 1001009 1044984 - MGP_C3HHeJ_P0042652 Srl protein_coding protein_coding MGP_C3HHeJ_T0042653.1 MGP_C3HHeJ_G0022197.1 mouse_genomes_project 16 1001021 1044984 - MGP_C3HHeJ_P0042653 Srl protein_coding protein_coding MGP_C3HHeJ_T0042654.1 MGP_C3HHeJ_G0022197.1 mouse_genomes_project 16 1008492 1065430 - Srl protein_coding processed_transcript MGP_C3HHeJ_T0042655.1 MGP_C3HHeJ_G0022197.1 mouse_genomes_project 16 1014516 1044972 - Srl protein_coding retained_intron MGP_C3HHeJ_T0043306.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697417 15768889 + MGP_C3HHeJ_P0043306 Gnb1l protein_coding protein_coding MGP_C3HHeJ_T0043307.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697472 15754598 + MGP_C3HHeJ_P0043307 Gnb1l protein_coding protein_coding MGP_C3HHeJ_T0043308.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697527 15754782 + Gnb1l protein_coding processed_transcript MGP_C3HHeJ_T0043309.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697535 15754648 + MGP_C3HHeJ_P0043309 Gnb1l protein_coding protein_coding MGP_C3HHeJ_T0043310.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697535 15768837 + MGP_C3HHeJ_P0043310 Gnb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043311.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697537 15768889 + MGP_C3HHeJ_P0043311 Gnb1l protein_coding protein_coding MGP_C3HHeJ_T0043312.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697537 15768889 + MGP_C3HHeJ_P0043312 Gnb1l protein_coding protein_coding MGP_C3HHeJ_T0043313.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697540 15754721 + Gnb1l protein_coding processed_transcript MGP_C3HHeJ_T0043314.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697546 15746435 + MGP_C3HHeJ_P0043314 Gnb1l protein_coding protein_coding MGP_C3HHeJ_T0043316.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15697551 15766748 + MGP_C3HHeJ_P0043316 Gnb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043317.1 MGP_C3HHeJ_G0022345.1 mouse_genomes_project 16 15750952 15754794 + Gnb1l protein_coding processed_transcript MGP_C3HHeJ_T0044594.1 MGP_C3HHeJ_G0022691.1 mouse_genomes_project 16 77227641 77233969 + MGP_C3HHeJ_P0044594 Gm17333 protein_coding protein_coding MGP_C3HHeJ_T0003595.1 MGP_C3HHeJ_G0003255.1 mouse_genomes_project 16 30482998 30485973 - Tnk2os antisense antisense MGP_C3HHeJ_T0013031.1 MGP_C3HHeJ_G0011135.1 mouse_genomes_project 16 41598313 41598848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044581.1 MGP_C3HHeJ_G0022687.1 mouse_genomes_project 16 75213360 75264195 - MGP_C3HHeJ_P0044581 Samsn1 protein_coding protein_coding MGP_C3HHeJ_T0044582.1 MGP_C3HHeJ_G0022687.1 mouse_genomes_project 16 75213361 75375483 - MGP_C3HHeJ_P0044582 Samsn1 protein_coding protein_coding MGP_C3HHeJ_T0044583.1 MGP_C3HHeJ_G0022687.1 mouse_genomes_project 16 75237750 75264125 - Samsn1 protein_coding retained_intron MGP_C3HHeJ_T0044584.1 MGP_C3HHeJ_G0022687.1 mouse_genomes_project 16 75238842 75264195 - Samsn1 protein_coding retained_intron MGP_C3HHeJ_T0044585.1 MGP_C3HHeJ_G0022687.1 mouse_genomes_project 16 75243148 75264164 - Samsn1 protein_coding retained_intron MGP_C3HHeJ_T0100311.1 MGP_C3HHeJ_G0038505.1 mouse_genomes_project 16 56539264 56539396 - Gm24039 snoRNA snoRNA MGP_C3HHeJ_T0003589.1 MGP_C3HHeJ_G0003250.1 mouse_genomes_project 16 16298323 16353420 + antisense antisense MGP_C3HHeJ_T0044321.1 MGP_C3HHeJ_G0022599.1 mouse_genomes_project 16 47256977 47258861 + MGP_C3HHeJ_P0044321 Retnlg protein_coding protein_coding MGP_C3HHeJ_T0006746.1 MGP_C3HHeJ_G0005557.1 mouse_genomes_project 16 14116240 14117832 + 1700056N10Rik lincRNA lincRNA MGP_C3HHeJ_T0010036.1 MGP_C3HHeJ_G0008169.1 mouse_genomes_project 16 15471945 15472033 - Gm24572 miRNA miRNA MGP_C3HHeJ_T0010083.1 MGP_C3HHeJ_G0008216.1 mouse_genomes_project 16 98080584 98080643 - Mir6964 miRNA miRNA MGP_C3HHeJ_T0045091.1 MGP_C3HHeJ_G0022827.1 mouse_genomes_project 16 98151887 98167081 - MGP_C3HHeJ_P0045091 Zbtb21 protein_coding protein_coding MGP_C3HHeJ_T0045092.1 MGP_C3HHeJ_G0022827.1 mouse_genomes_project 16 98151887 98167081 - MGP_C3HHeJ_P0045092 Zbtb21 protein_coding protein_coding MGP_C3HHeJ_T0045093.1 MGP_C3HHeJ_G0022827.1 mouse_genomes_project 16 98151887 98167081 - MGP_C3HHeJ_P0045093 Zbtb21 protein_coding protein_coding MGP_C3HHeJ_T0043324.1 MGP_C3HHeJ_G0022351.1 mouse_genomes_project 16 16004200 16038648 - MGP_C3HHeJ_P0043324 Cdc45 protein_coding protein_coding MGP_C3HHeJ_T0043325.1 MGP_C3HHeJ_G0022351.1 mouse_genomes_project 16 16004206 16038302 - MGP_C3HHeJ_P0043325 Cdc45 protein_coding protein_coding MGP_C3HHeJ_T0043326.1 MGP_C3HHeJ_G0022351.1 mouse_genomes_project 16 16034031 16038663 - MGP_C3HHeJ_P0043326 Cdc45 protein_coding protein_coding MGP_C3HHeJ_T0010050.1 MGP_C3HHeJ_G0008183.1 mouse_genomes_project 16 30912350 30912423 + Gm22231 miRNA miRNA MGP_C3HHeJ_T0044535.1 MGP_C3HHeJ_G0022672.1 mouse_genomes_project 16 63731617 63746414 - protein_coding processed_transcript MGP_C3HHeJ_T0100289.1 MGP_C3HHeJ_G0038483.1 mouse_genomes_project 16 20641273 20641451 + Snora81 snoRNA snoRNA MGP_C3HHeJ_T0043368.1 MGP_C3HHeJ_G0022366.1 mouse_genomes_project 16 17202640 17240671 - MGP_C3HHeJ_P0043368 Klhl6 protein_coding protein_coding MGP_C3HHeJ_T0043369.1 MGP_C3HHeJ_G0022366.1 mouse_genomes_project 16 17214675 17224025 - Klhl6 protein_coding retained_intron MGP_C3HHeJ_T0043370.1 MGP_C3HHeJ_G0022366.1 mouse_genomes_project 16 17214695 17240641 - MGP_C3HHeJ_P0043370 Klhl6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043371.1 MGP_C3HHeJ_G0022366.1 mouse_genomes_project 16 17223749 17240564 - MGP_C3HHeJ_P0043371 Klhl6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043675.1 MGP_C3HHeJ_G0022442.1 mouse_genomes_project 16 27986905 28000860 - MGP_C3HHeJ_P0043675 Lrrc15 protein_coding protein_coding MGP_C3HHeJ_T0017264.1 MGP_C3HHeJ_G0015073.1 mouse_genomes_project 16 1814374 1861558 + Gm15983 processed_transcript processed_transcript MGP_C3HHeJ_T0043018.1 MGP_C3HHeJ_G0022292.1 mouse_genomes_project 16 13707357 13708499 - MGP_C3HHeJ_P0043018 Olfr19 protein_coding protein_coding MGP_C3HHeJ_T0043019.1 MGP_C3HHeJ_G0022292.1 mouse_genomes_project 16 13707816 13710887 - MGP_C3HHeJ_P0043019 Olfr19 protein_coding protein_coding MGP_C3HHeJ_T0044467.1 MGP_C3HHeJ_G0022638.1 mouse_genomes_project 16 57427529 57429752 - MGP_C3HHeJ_P0044467 Olfr172 protein_coding protein_coding MGP_C3HHeJ_T0044367.1 MGP_C3HHeJ_G0022611.1 mouse_genomes_project 16 54423770 54482271 - MGP_C3HHeJ_P0044367 Nxpe3 protein_coding protein_coding MGP_C3HHeJ_T0043086.1 MGP_C3HHeJ_G0022303.1 mouse_genomes_project 16 14231396 14238057 + MGP_C3HHeJ_P0043086 Ydjc protein_coding protein_coding MGP_C3HHeJ_T0043087.1 MGP_C3HHeJ_G0022303.1 mouse_genomes_project 16 14232618 14235622 + Ydjc protein_coding retained_intron MGP_C3HHeJ_T0043088.1 MGP_C3HHeJ_G0022303.1 mouse_genomes_project 16 14233712 14249522 + MGP_C3HHeJ_P0043088 Ydjc protein_coding protein_coding MGP_C3HHeJ_T0043089.1 MGP_C3HHeJ_G0022303.1 mouse_genomes_project 16 14233724 14238473 + Ydjc protein_coding retained_intron MGP_C3HHeJ_T0043090.1 MGP_C3HHeJ_G0022303.1 mouse_genomes_project 16 14233751 14235622 + Ydjc protein_coding retained_intron MGP_C3HHeJ_T0043091.1 MGP_C3HHeJ_G0022303.1 mouse_genomes_project 16 14233754 14235622 + MGP_C3HHeJ_P0043091 Ydjc protein_coding protein_coding MGP_C3HHeJ_T0044501.1 MGP_C3HHeJ_G0022661.1 mouse_genomes_project 16 58160980 58218592 + MGP_C3HHeJ_P0044501 Gabrr3 protein_coding protein_coding MGP_C3HHeJ_T0043187.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777033 14779979 + Ccdc74a protein_coding retained_intron MGP_C3HHeJ_T0043188.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777038 14781302 + MGP_C3HHeJ_P0043188 Ccdc74a protein_coding protein_coding MGP_C3HHeJ_T0043189.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777038 14779805 + MGP_C3HHeJ_P0043189 Ccdc74a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043190.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777114 14779037 + Ccdc74a protein_coding retained_intron MGP_C3HHeJ_T0043191.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777127 14781301 + MGP_C3HHeJ_P0043191 Ccdc74a protein_coding protein_coding MGP_C3HHeJ_T0043192.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777128 14780973 + MGP_C3HHeJ_P0043192 Ccdc74a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043193.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777176 14781302 + MGP_C3HHeJ_P0043193 Ccdc74a protein_coding protein_coding MGP_C3HHeJ_T0043194.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777181 14781011 + MGP_C3HHeJ_P0043194 Ccdc74a protein_coding protein_coding MGP_C3HHeJ_T0043195.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777236 14778425 + Ccdc74a protein_coding retained_intron MGP_C3HHeJ_T0043196.1 MGP_C3HHeJ_G0022319.1 mouse_genomes_project 16 14777263 14781302 + MGP_C3HHeJ_P0043196 Ccdc74a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0012982.1 MGP_C3HHeJ_G0011086.1 mouse_genomes_project 16 6794592 6794799 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017265.1 MGP_C3HHeJ_G0015074.1 mouse_genomes_project 16 15245810 15246959 + Gm15954 processed_transcript processed_transcript MGP_C3HHeJ_T0044120.1 MGP_C3HHeJ_G0022551.1 mouse_genomes_project 16 36883418 36912706 + MGP_C3HHeJ_P0044120 B4galt4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044121.1 MGP_C3HHeJ_G0022551.1 mouse_genomes_project 16 36893922 36912712 + MGP_C3HHeJ_P0044121 B4galt4 protein_coding protein_coding MGP_C3HHeJ_T0044122.1 MGP_C3HHeJ_G0022551.1 mouse_genomes_project 16 36904667 36912169 + MGP_C3HHeJ_P0044122 B4galt4 protein_coding protein_coding MGP_C3HHeJ_T0044123.1 MGP_C3HHeJ_G0022551.1 mouse_genomes_project 16 36906748 36910136 + B4galt4 protein_coding retained_intron MGP_C3HHeJ_T0044273.1 MGP_C3HHeJ_G0022583.1 mouse_genomes_project 16 43889597 43962083 + MGP_C3HHeJ_P0044273 Slc9c1 protein_coding protein_coding MGP_C3HHeJ_T0044274.1 MGP_C3HHeJ_G0022583.1 mouse_genomes_project 16 43893955 43961968 + MGP_C3HHeJ_P0044274 Slc9c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044275.1 MGP_C3HHeJ_G0022583.1 mouse_genomes_project 16 43893955 43961968 + MGP_C3HHeJ_P0044275 Slc9c1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042897.1 MGP_C3HHeJ_G0022260.1 mouse_genomes_project 16 8760355 8790607 + MGP_C3HHeJ_P0042897 Gm9961 protein_coding protein_coding MGP_C3HHeJ_T0013023.1 MGP_C3HHeJ_G0011127.1 mouse_genomes_project 16 36619541 36620714 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043491.1 MGP_C3HHeJ_G0022385.1 mouse_genomes_project 16 18015578 18020192 + MGP_C3HHeJ_P0043491 Polr2h protein_coding protein_coding MGP_C3HHeJ_T0043492.1 MGP_C3HHeJ_G0022385.1 mouse_genomes_project 16 18016085 18019932 + Polr2h protein_coding processed_transcript MGP_C3HHeJ_T0010037.1 MGP_C3HHeJ_G0008170.1 mouse_genomes_project 16 15513453 15513518 - Mir185 miRNA miRNA MGP_C3HHeJ_T0042931.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10779621 10855558 - MGP_C3HHeJ_P0042931 Pdxdc1 protein_coding protein_coding MGP_C3HHeJ_T0042932.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10780051 10788530 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042934.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10780635 10793694 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042935.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10780640 10855452 - MGP_C3HHeJ_P0042935 Pdxdc1 protein_coding protein_coding MGP_C3HHeJ_T0042936.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10780756 10785278 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042937.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10782807 10855413 - Pdxdc1 protein_coding retained_intron MGP_C3HHeJ_T0042938.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10784003 10787535 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042939.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10785152 10788535 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042940.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10785831 10786560 - Pdxdc1 protein_coding retained_intron MGP_C3HHeJ_T0042941.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10796732 10855486 - MGP_C3HHeJ_P0042941 Pdxdc1 protein_coding protein_coding MGP_C3HHeJ_T0042942.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10798298 10855562 - MGP_C3HHeJ_P0042942 Pdxdc1 protein_coding protein_coding MGP_C3HHeJ_T0042943.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10808557 10825886 - Pdxdc1 protein_coding retained_intron MGP_C3HHeJ_T0042944.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10825716 10855416 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042945.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10831425 10855406 - Pdxdc1 protein_coding processed_transcript MGP_C3HHeJ_T0042946.1 MGP_C3HHeJ_G0022270.1 mouse_genomes_project 16 10837293 10855411 - Pdxdc1 protein_coding retained_intron MGP_C3HHeJ_T0010027.1 MGP_C3HHeJ_G0008160.1 mouse_genomes_project 16 10366752 10366839 + Mir365-1 miRNA miRNA MGP_C3HHeJ_T0006771.1 MGP_C3HHeJ_G0005579.1 mouse_genomes_project 16 48164608 48170490 + Gm16619 lincRNA lincRNA MGP_C3HHeJ_T0043353.1 MGP_C3HHeJ_G0022358.1 mouse_genomes_project 16 16653865 16654905 - MGP_C3HHeJ_P0043353 Olfr165 protein_coding protein_coding MGP_C3HHeJ_T0043355.1 MGP_C3HHeJ_G0022358.1 mouse_genomes_project 16 16654461 16668276 - MGP_C3HHeJ_P0043355 Olfr165 protein_coding protein_coding MGP_C3HHeJ_T0044231.1 MGP_C3HHeJ_G0022575.1 mouse_genomes_project 16 43211132 43258495 + MGP_C3HHeJ_P0044231 Cd200r2 protein_coding protein_coding MGP_C3HHeJ_T0042898.1 MGP_C3HHeJ_G0022261.1 mouse_genomes_project 16 8844678 8855951 + Shisa9 protein_coding processed_transcript MGP_C3HHeJ_T0042899.1 MGP_C3HHeJ_G0022261.1 mouse_genomes_project 16 8845146 9139376 + MGP_C3HHeJ_P0042899 Shisa9 protein_coding protein_coding MGP_C3HHeJ_T0042900.1 MGP_C3HHeJ_G0022261.1 mouse_genomes_project 16 8845146 9140329 + MGP_C3HHeJ_P0042900 Shisa9 protein_coding protein_coding MGP_C3HHeJ_T0042901.1 MGP_C3HHeJ_G0022261.1 mouse_genomes_project 16 8845243 8850649 + Shisa9 protein_coding processed_transcript MGP_C3HHeJ_T0006772.1 MGP_C3HHeJ_G0005580.1 mouse_genomes_project 16 48912479 48947505 + G730013B05Rik lincRNA lincRNA MGP_C3HHeJ_T0099033.1 MGP_C3HHeJ_G0037227.1 mouse_genomes_project 16 19161061 19161167 + Gm24898 snRNA snRNA MGP_C3HHeJ_T0044194.1 MGP_C3HHeJ_G0022567.1 mouse_genomes_project 16 42551902 42652955 - MGP_C3HHeJ_P0044194 Sidt1 protein_coding protein_coding MGP_C3HHeJ_T0044195.1 MGP_C3HHeJ_G0022567.1 mouse_genomes_project 16 42553359 42652492 - MGP_C3HHeJ_P0044195 Sidt1 protein_coding protein_coding MGP_C3HHeJ_T0044196.1 MGP_C3HHeJ_G0022567.1 mouse_genomes_project 16 42586339 42595642 - Sidt1 protein_coding retained_intron MGP_C3HHeJ_T0044197.1 MGP_C3HHeJ_G0022567.1 mouse_genomes_project 16 42595201 42596301 - MGP_C3HHeJ_P0044197 Sidt1 protein_coding protein_coding MGP_C3HHeJ_T0044198.1 MGP_C3HHeJ_G0022567.1 mouse_genomes_project 16 42598052 42652505 - Sidt1 protein_coding processed_transcript MGP_C3HHeJ_T0010033.1 MGP_C3HHeJ_G0008166.1 mouse_genomes_project 16 14206441 14206538 - Mir301b miRNA miRNA MGP_C3HHeJ_T0043661.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27262917 27336697 + MGP_C3HHeJ_P0043661 Opa1 protein_coding protein_coding MGP_C3HHeJ_T0043662.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27262961 27296317 + Opa1 protein_coding retained_intron MGP_C3HHeJ_T0043663.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27262963 27311910 + MGP_C3HHeJ_P0043663 Opa1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043664.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27262963 27330323 + MGP_C3HHeJ_P0043664 Opa1 protein_coding protein_coding MGP_C3HHeJ_T0043665.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27262963 27333685 + MGP_C3HHeJ_P0043665 Opa1 protein_coding protein_coding MGP_C3HHeJ_T0043666.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27262975 27333688 + Opa1 protein_coding retained_intron MGP_C3HHeJ_T0043667.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27268939 27292599 + MGP_C3HHeJ_P0043667 Opa1 protein_coding protein_coding MGP_C3HHeJ_T0043668.1 MGP_C3HHeJ_G0022438.1 mouse_genomes_project 16 27298317 27300400 + Opa1 protein_coding retained_intron MGP_C3HHeJ_T0099039.1 MGP_C3HHeJ_G0037233.1 mouse_genomes_project 16 33172634 33172762 - Gm25179 snRNA snRNA MGP_C3HHeJ_T0006744.1 MGP_C3HHeJ_G0005556.1 mouse_genomes_project 16 10431061 10437362 - 2310015D24Rik lincRNA lincRNA MGP_C3HHeJ_T0006745.1 MGP_C3HHeJ_G0005556.1 mouse_genomes_project 16 10436121 10438050 - 2310015D24Rik lincRNA lincRNA MGP_C3HHeJ_T0013029.1 MGP_C3HHeJ_G0011133.1 mouse_genomes_project 16 41231391 41231710 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0012987.1 MGP_C3HHeJ_G0011091.1 mouse_genomes_project 16 10967987 10968942 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043286.1 MGP_C3HHeJ_G0022343.1 mouse_genomes_project 16 15597891 15604267 - MGP_C3HHeJ_P0043286 Comt protein_coding protein_coding MGP_C3HHeJ_T0043287.1 MGP_C3HHeJ_G0022343.1 mouse_genomes_project 16 15598308 15617457 - MGP_C3HHeJ_P0043287 Comt protein_coding protein_coding MGP_C3HHeJ_T0043288.1 MGP_C3HHeJ_G0022343.1 mouse_genomes_project 16 15598316 15616990 - MGP_C3HHeJ_P0043288 Comt protein_coding protein_coding MGP_C3HHeJ_T0043289.1 MGP_C3HHeJ_G0022343.1 mouse_genomes_project 16 15601535 15604267 - MGP_C3HHeJ_P0043289 Comt protein_coding protein_coding MGP_C3HHeJ_T0010021.1 MGP_C3HHeJ_G0008154.1 mouse_genomes_project 16 426091 426179 + Gm23493 miRNA miRNA MGP_C3HHeJ_T0043704.1 MGP_C3HHeJ_G0022449.1 mouse_genomes_project 16 28844468 28956461 - MGP_C3HHeJ_P0043704 Acap2 protein_coding protein_coding MGP_C3HHeJ_T0043705.1 MGP_C3HHeJ_G0022449.1 mouse_genomes_project 16 28848550 28956214 - MGP_C3HHeJ_P0043705 Acap2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010038.1 MGP_C3HHeJ_G0008171.1 mouse_genomes_project 16 15549295 15549366 - Gm26219 miRNA miRNA MGP_C3HHeJ_T0006755.1 MGP_C3HHeJ_G0005564.1 mouse_genomes_project 16 21976164 21978141 - Lppos lincRNA lincRNA MGP_C3HHeJ_T0043786.1 MGP_C3HHeJ_G0022470.1 mouse_genomes_project 16 30237885 30247626 + MGP_C3HHeJ_P0043786 Tctex1d2 protein_coding protein_coding MGP_C3HHeJ_T0043787.1 MGP_C3HHeJ_G0022470.1 mouse_genomes_project 16 30237919 30247624 + Tctex1d2 protein_coding retained_intron MGP_C3HHeJ_T0010059.1 MGP_C3HHeJ_G0008192.1 mouse_genomes_project 16 42884938 42885022 - Mir3081 miRNA miRNA MGP_C3HHeJ_T0043557.1 MGP_C3HHeJ_G0022407.1 mouse_genomes_project 16 20445066 20522066 - MGP_C3HHeJ_P0043557 Kng2 protein_coding protein_coding MGP_C3HHeJ_T0044715.1 MGP_C3HHeJ_G0022752.1 mouse_genomes_project 16 89328156 89328776 - MGP_C3HHeJ_P0044715 Krtap7-1 protein_coding protein_coding MGP_C3HHeJ_T0043344.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16109857 16164759 + MGP_C3HHeJ_P0043344 Hira protein_coding protein_coding MGP_C3HHeJ_T0043345.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16109886 16206886 + MGP_C3HHeJ_P0043345 Hira protein_coding protein_coding MGP_C3HHeJ_T0043346.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16110090 16144950 + Hira protein_coding retained_intron MGP_C3HHeJ_T0043347.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16110090 16171704 + MGP_C3HHeJ_P0043347 Hira protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043348.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16110232 16153320 + Hira protein_coding retained_intron MGP_C3HHeJ_T0043349.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16159806 16162391 + Hira protein_coding processed_transcript MGP_C3HHeJ_T0043350.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16162310 16171759 + Hira protein_coding retained_intron MGP_C3HHeJ_T0043351.1 MGP_C3HHeJ_G0022356.1 mouse_genomes_project 16 16169636 16184150 + Hira protein_coding processed_transcript MGP_C3HHeJ_T0006782.1 MGP_C3HHeJ_G0005586.1 mouse_genomes_project 16 58219611 58225636 - 1700022E09Rik lincRNA lincRNA MGP_C3HHeJ_T0006783.1 MGP_C3HHeJ_G0005586.1 mouse_genomes_project 16 58223572 58225670 - 1700022E09Rik lincRNA lincRNA MGP_C3HHeJ_T0045000.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95446968 95624018 - MGP_C3HHeJ_P0045000 Erg protein_coding protein_coding MGP_C3HHeJ_T0045001.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95446972 95560531 - MGP_C3HHeJ_P0045001 Erg protein_coding protein_coding MGP_C3HHeJ_T0045002.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448009 95624018 - MGP_C3HHeJ_P0045002 Erg protein_coding protein_coding MGP_C3HHeJ_T0045003.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448009 95682051 - MGP_C3HHeJ_P0045003 Erg protein_coding protein_coding MGP_C3HHeJ_T0045004.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448141 95560576 - MGP_C3HHeJ_P0045004 Erg protein_coding protein_coding MGP_C3HHeJ_T0045005.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448444 95618433 - MGP_C3HHeJ_P0045005 Erg protein_coding protein_coding MGP_C3HHeJ_T0045006.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448605 95560473 - MGP_C3HHeJ_P0045006 Erg protein_coding protein_coding MGP_C3HHeJ_T0045007.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448605 95623976 - MGP_C3HHeJ_P0045007 Erg protein_coding protein_coding MGP_C3HHeJ_T0045008.1 MGP_C3HHeJ_G0022807.1 mouse_genomes_project 16 95448605 95560473 - MGP_C3HHeJ_P0045008 Erg protein_coding protein_coding MGP_C3HHeJ_T0012977.1 MGP_C3HHeJ_G0011081.1 mouse_genomes_project 16 840764 841089 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043619.1 MGP_C3HHeJ_G0022424.1 mouse_genomes_project 16 23984639 24000527 - MGP_C3HHeJ_P0043619 Cldn1 protein_coding protein_coding MGP_C3HHeJ_T0101774.1 MGP_C3HHeJ_G0039739.1 mouse_genomes_project 16 57629125 57629696 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0043634.1 MGP_C3HHeJ_G0022431.1 mouse_genomes_project 16 25014388 25031390 - MGP_C3HHeJ_P0043634 Uts2b protein_coding protein_coding MGP_C3HHeJ_T0043868.1 MGP_C3HHeJ_G0022484.1 mouse_genomes_project 16 30906759 30974736 + MGP_C3HHeJ_P0043868 Lmln protein_coding protein_coding MGP_C3HHeJ_T0043869.1 MGP_C3HHeJ_G0022484.1 mouse_genomes_project 16 30936993 30951227 + Lmln protein_coding retained_intron MGP_C3HHeJ_T0043870.1 MGP_C3HHeJ_G0022484.1 mouse_genomes_project 16 30963714 30970952 + Lmln protein_coding retained_intron MGP_C3HHeJ_T0043871.1 MGP_C3HHeJ_G0022484.1 mouse_genomes_project 16 30971305 30972647 + Lmln protein_coding processed_transcript MGP_C3HHeJ_T0044468.1 MGP_C3HHeJ_G0022639.1 mouse_genomes_project 16 57458547 57461670 - MGP_C3HHeJ_P0044468 protein_coding protein_coding MGP_C3HHeJ_T0044469.1 MGP_C3HHeJ_G0022639.1 mouse_genomes_project 16 57461176 57463944 - MGP_C3HHeJ_P0044469 protein_coding protein_coding MGP_C3HHeJ_T0098063.1 MGP_C3HHeJ_G0036275.1 mouse_genomes_project 16 39433869 39433961 + Gm26381 rRNA rRNA MGP_C3HHeJ_T0043923.1 MGP_C3HHeJ_G0022496.1 mouse_genomes_project 16 32664638 32800500 + Mylk protein_coding retained_intron MGP_C3HHeJ_T0043924.1 MGP_C3HHeJ_G0022496.1 mouse_genomes_project 16 32704264 32927145 + MGP_C3HHeJ_P0043924 Mylk protein_coding protein_coding MGP_C3HHeJ_T0044546.1 MGP_C3HHeJ_G0022678.1 mouse_genomes_project 16 64804038 64852379 + MGP_C3HHeJ_P0044546 Vgll3 protein_coding protein_coding MGP_C3HHeJ_T0044547.1 MGP_C3HHeJ_G0022678.1 mouse_genomes_project 16 64804038 64850037 + MGP_C3HHeJ_P0044547 Vgll3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010076.1 MGP_C3HHeJ_G0008209.1 mouse_genomes_project 16 90848796 90848870 + Gm22933 miRNA miRNA MGP_C3HHeJ_T0013055.1 MGP_C3HHeJ_G0011159.1 mouse_genomes_project 16 82949222 82949705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100283.1 MGP_C3HHeJ_G0038477.1 mouse_genomes_project 16 15426257 15426383 - Gm25777 snoRNA snoRNA MGP_C3HHeJ_T0013000.1 MGP_C3HHeJ_G0011104.1 mouse_genomes_project 16 16269466 16270114 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010032.1 MGP_C3HHeJ_G0008165.1 mouse_genomes_project 16 14206102 14206184 - Mir130b miRNA miRNA MGP_C3HHeJ_T0044256.1 MGP_C3HHeJ_G0022579.1 mouse_genomes_project 16 43493363 43523084 + MGP_C3HHeJ_P0044256 Atg3 protein_coding protein_coding MGP_C3HHeJ_T0044257.1 MGP_C3HHeJ_G0022579.1 mouse_genomes_project 16 43500443 43522439 + Atg3 protein_coding retained_intron MGP_C3HHeJ_T0010044.1 MGP_C3HHeJ_G0008177.1 mouse_genomes_project 16 20052968 20053075 + Mir6362 miRNA miRNA MGP_C3HHeJ_T0042775.1 MGP_C3HHeJ_G0022230.1 mouse_genomes_project 16 5327395 5341764 - MGP_C3HHeJ_P0042775 Carhsp1 protein_coding protein_coding MGP_C3HHeJ_T0044703.1 MGP_C3HHeJ_G0022742.1 mouse_genomes_project 16 88921359 88921879 + MGP_C3HHeJ_P0044703 Krtap6-3 protein_coding protein_coding MGP_C3HHeJ_T0044704.1 MGP_C3HHeJ_G0022742.1 mouse_genomes_project 16 88921435 88921879 + MGP_C3HHeJ_P0044704 Krtap6-3 protein_coding protein_coding MGP_C3HHeJ_T0098377.1 MGP_C3HHeJ_G0036584.1 mouse_genomes_project 16 23655790 23665227 - AU015336 sense_intronic sense_intronic MGP_C3HHeJ_T0003588.1 MGP_C3HHeJ_G0003249.1 mouse_genomes_project 16 15797495 15817724 + 4930588K23Rik antisense antisense MGP_C3HHeJ_T0045073.1 MGP_C3HHeJ_G0022822.1 mouse_genomes_project 16 97662305 97667538 - Fam3b protein_coding processed_transcript MGP_C3HHeJ_T0045074.1 MGP_C3HHeJ_G0022822.1 mouse_genomes_project 16 97662339 97699519 - MGP_C3HHeJ_P0045074 Fam3b protein_coding protein_coding MGP_C3HHeJ_T0012978.1 MGP_C3HHeJ_G0011082.1 mouse_genomes_project 16 1062929 1063317 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003574.1 MGP_C3HHeJ_G0003237.1 mouse_genomes_project 16 426687 428234 - Gm15537 antisense antisense MGP_C3HHeJ_T0043007.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13436962 13575842 - MGP_C3HHeJ_P0043007 Fgd4 protein_coding protein_coding MGP_C3HHeJ_T0043008.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13442608 13618818 - MGP_C3HHeJ_P0043008 Fgd4 protein_coding protein_coding MGP_C3HHeJ_T0043009.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13442647 13541383 - MGP_C3HHeJ_P0043009 Fgd4 protein_coding protein_coding MGP_C3HHeJ_T0043010.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13454908 13575669 - Fgd4 protein_coding retained_intron MGP_C3HHeJ_T0043011.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13454908 13524742 - MGP_C3HHeJ_P0043011 Fgd4 protein_coding protein_coding MGP_C3HHeJ_T0043012.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13476855 13575834 - Fgd4 protein_coding retained_intron MGP_C3HHeJ_T0043013.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13477883 13575834 - Fgd4 protein_coding retained_intron MGP_C3HHeJ_T0043014.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13486604 13619389 - MGP_C3HHeJ_P0043014 Fgd4 protein_coding protein_coding MGP_C3HHeJ_T0043015.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13494663 13575613 - Fgd4 protein_coding retained_intron MGP_C3HHeJ_T0043016.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13504639 13618879 - Fgd4 protein_coding retained_intron MGP_C3HHeJ_T0043017.1 MGP_C3HHeJ_G0022291.1 mouse_genomes_project 16 13505618 13541383 - Fgd4 protein_coding retained_intron MGP_C3HHeJ_T0042804.1 MGP_C3HHeJ_G0022237.1 mouse_genomes_project 16 7072076 7109296 - MGP_C3HHeJ_P0042804 Emp2 protein_coding protein_coding MGP_C3HHeJ_T0043691.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28294294 28322080 - MGP_C3HHeJ_P0043691 Lsg1 protein_coding protein_coding MGP_C3HHeJ_T0043692.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28295171 28322077 - MGP_C3HHeJ_P0043692 Lsg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043693.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28298478 28322051 - Lsg1 protein_coding retained_intron MGP_C3HHeJ_T0043694.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28298830 28301918 - Lsg1 protein_coding retained_intron MGP_C3HHeJ_T0043695.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28301821 28322080 - Lsg1 protein_coding retained_intron MGP_C3HHeJ_T0043696.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28305866 28320138 - MGP_C3HHeJ_P0043696 Lsg1 protein_coding protein_coding MGP_C3HHeJ_T0043697.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28307805 28322062 - Lsg1 protein_coding retained_intron MGP_C3HHeJ_T0043698.1 MGP_C3HHeJ_G0022446.1 mouse_genomes_project 16 28316740 28322027 - Lsg1 protein_coding retained_intron MGP_C3HHeJ_T0043874.1 MGP_C3HHeJ_G0022487.1 mouse_genomes_project 16 31254696 31382948 + MGP_C3HHeJ_P0043874 Zfp148 protein_coding protein_coding MGP_C3HHeJ_T0043875.1 MGP_C3HHeJ_G0022487.1 mouse_genomes_project 16 31275536 31378939 + MGP_C3HHeJ_P0043875 Zfp148 protein_coding protein_coding MGP_C3HHeJ_T0099045.1 MGP_C3HHeJ_G0037239.1 mouse_genomes_project 16 34304907 34305011 - Gm24218 snRNA snRNA MGP_C3HHeJ_T0044354.1 MGP_C3HHeJ_G0022606.1 mouse_genomes_project 16 48978686 48979982 - MGP_C3HHeJ_P0044354 Ccdc54 protein_coding protein_coding MGP_C3HHeJ_T0044609.1 MGP_C3HHeJ_G0022699.1 mouse_genomes_project 16 84375731 84397260 - MGP_C3HHeJ_P0044609 Mrpl39 protein_coding protein_coding MGP_C3HHeJ_T0044610.1 MGP_C3HHeJ_G0022699.1 mouse_genomes_project 16 84395685 84396748 - Mrpl39 protein_coding processed_transcript MGP_C3HHeJ_T0042616.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 477571 487573 - MGP_C3HHeJ_P0042616 Slx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042617.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 477589 501623 - MGP_C3HHeJ_P0042617 Slx4 protein_coding protein_coding MGP_C3HHeJ_T0042618.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 477590 494219 - MGP_C3HHeJ_P0042618 Slx4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042619.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 477594 483986 - Slx4 protein_coding retained_intron MGP_C3HHeJ_T0042620.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 477599 480671 - Slx4 protein_coding retained_intron MGP_C3HHeJ_T0042621.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 493268 501195 - MGP_C3HHeJ_P0042621 Slx4 protein_coding protein_coding MGP_C3HHeJ_T0042622.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 500945 503713 - MGP_C3HHeJ_P0042622 Slx4 protein_coding protein_coding MGP_C3HHeJ_T0042623.1 MGP_C3HHeJ_G0022191.1 mouse_genomes_project 16 501143 503695 - MGP_C3HHeJ_P0042623 Slx4 protein_coding protein_coding MGP_C3HHeJ_T0100296.1 MGP_C3HHeJ_G0038490.1 mouse_genomes_project 16 30042791 30042935 - Gm25848 snoRNA snoRNA MGP_C3HHeJ_T0042907.1 MGP_C3HHeJ_G0022263.1 mouse_genomes_project 16 10160731 10324937 + MGP_C3HHeJ_P0042907 Mkl2 protein_coding protein_coding MGP_C3HHeJ_T0042908.1 MGP_C3HHeJ_G0022263.1 mouse_genomes_project 16 10160756 10242556 + MGP_C3HHeJ_P0042908 Mkl2 protein_coding protein_coding MGP_C3HHeJ_T0042909.1 MGP_C3HHeJ_G0022263.1 mouse_genomes_project 16 10169411 10242553 + MGP_C3HHeJ_P0042909 Mkl2 protein_coding protein_coding MGP_C3HHeJ_T0042910.1 MGP_C3HHeJ_G0022263.1 mouse_genomes_project 16 10268190 10328195 + MGP_C3HHeJ_P0042910 Mkl2 protein_coding protein_coding MGP_C3HHeJ_T0099060.1 MGP_C3HHeJ_G0037254.1 mouse_genomes_project 16 61495307 61495411 + Gm24164 snRNA snRNA MGP_C3HHeJ_T0043260.1 MGP_C3HHeJ_G0022340.1 mouse_genomes_project 16 15439488 15476641 - MGP_C3HHeJ_P0043260 Dgcr8 protein_coding protein_coding MGP_C3HHeJ_T0043261.1 MGP_C3HHeJ_G0022340.1 mouse_genomes_project 16 15439497 15476644 - MGP_C3HHeJ_P0043261 Dgcr8 protein_coding protein_coding MGP_C3HHeJ_T0043262.1 MGP_C3HHeJ_G0022340.1 mouse_genomes_project 16 15440481 15452892 - Dgcr8 protein_coding processed_transcript MGP_C3HHeJ_T0043263.1 MGP_C3HHeJ_G0022340.1 mouse_genomes_project 16 15458868 15471959 - Dgcr8 protein_coding retained_intron MGP_C3HHeJ_T0043264.1 MGP_C3HHeJ_G0022340.1 mouse_genomes_project 16 15459051 15467642 - Dgcr8 protein_coding retained_intron MGP_C3HHeJ_T0043265.1 MGP_C3HHeJ_G0022340.1 mouse_genomes_project 16 15474977 15476565 - Dgcr8 protein_coding processed_transcript MGP_C3HHeJ_T0000926.1 MGP_C3HHeJ_G0000865.1 mouse_genomes_project 16 41593654 41594001 - TEC TEC MGP_C3HHeJ_T0000937.1 MGP_C3HHeJ_G0000875.1 mouse_genomes_project 16 76869758 76870281 + TEC TEC MGP_C3HHeJ_T0044537.1 MGP_C3HHeJ_G0022674.1 mouse_genomes_project 16 63832763 63840275 + MGP_C3HHeJ_P0044537 Cggbp1 protein_coding protein_coding MGP_C3HHeJ_T0044538.1 MGP_C3HHeJ_G0022674.1 mouse_genomes_project 16 63833469 63836754 + Cggbp1 protein_coding retained_intron MGP_C3HHeJ_T0010065.1 MGP_C3HHeJ_G0008198.1 mouse_genomes_project 16 59531999 59532112 - Gm27784 miRNA miRNA MGP_C3HHeJ_T0003617.1 MGP_C3HHeJ_G0003271.1 mouse_genomes_project 16 48117426 48162939 - Gm15518 antisense antisense MGP_C3HHeJ_T0010048.1 MGP_C3HHeJ_G0008181.1 mouse_genomes_project 16 29016473 29016568 + Gm27415 miRNA miRNA MGP_C3HHeJ_T0044492.1 MGP_C3HHeJ_G0022652.1 mouse_genomes_project 16 57905578 57906632 - MGP_C3HHeJ_P0044492 Olfr198 protein_coding protein_coding MGP_C3HHeJ_T0043779.1 MGP_C3HHeJ_G0022466.1 mouse_genomes_project 16 30076546 30079844 + MGP_C3HHeJ_P0043779 Smco1 protein_coding protein_coding MGP_C3HHeJ_T0013038.1 MGP_C3HHeJ_G0011142.1 mouse_genomes_project 16 46580428 46581028 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043622.1 MGP_C3HHeJ_G0022426.1 mouse_genomes_project 16 24135490 24159494 - MGP_C3HHeJ_P0043622 Tmem207 protein_coding protein_coding MGP_C3HHeJ_T0043545.1 MGP_C3HHeJ_G0022403.1 mouse_genomes_project 16 20319810 20334444 + MGP_C3HHeJ_P0043545 Dnajb11 protein_coding protein_coding MGP_C3HHeJ_T0043546.1 MGP_C3HHeJ_G0022403.1 mouse_genomes_project 16 20319810 20334367 + MGP_C3HHeJ_P0043546 Dnajb11 protein_coding protein_coding MGP_C3HHeJ_T0043547.1 MGP_C3HHeJ_G0022403.1 mouse_genomes_project 16 20319810 20341613 + MGP_C3HHeJ_P0043547 Dnajb11 protein_coding protein_coding MGP_C3HHeJ_T0043548.1 MGP_C3HHeJ_G0022403.1 mouse_genomes_project 16 20319871 20334083 + Dnajb11 protein_coding processed_transcript MGP_C3HHeJ_T0043549.1 MGP_C3HHeJ_G0022403.1 mouse_genomes_project 16 20331405 20334285 + Dnajb11 protein_coding processed_transcript MGP_C3HHeJ_T0042839.1 MGP_C3HHeJ_G0022248.1 mouse_genomes_project 16 7611605 7612166 - MGP_C3HHeJ_P0042839 Prm1 protein_coding protein_coding MGP_C3HHeJ_T0013006.1 MGP_C3HHeJ_G0011110.1 mouse_genomes_project 16 19463938 19464362 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006760.1 MGP_C3HHeJ_G0005569.1 mouse_genomes_project 16 27906249 27911357 + 1700025H01Rik lincRNA lincRNA MGP_C3HHeJ_T0003602.1 MGP_C3HHeJ_G0003260.1 mouse_genomes_project 16 32857447 32860943 - 1700119H24Rik antisense antisense MGP_C3HHeJ_T0099067.1 MGP_C3HHeJ_G0037261.1 mouse_genomes_project 16 88437622 88437706 - Gm23587 snRNA snRNA MGP_C3HHeJ_T0100294.1 MGP_C3HHeJ_G0038488.1 mouse_genomes_project 16 29535754 29535897 - Gm24879 snoRNA snoRNA MGP_C3HHeJ_T0010035.1 MGP_C3HHeJ_G0008168.1 mouse_genomes_project 16 15471634 15471713 - Mir1306 miRNA miRNA MGP_C3HHeJ_T0043245.1 MGP_C3HHeJ_G0022336.1 mouse_genomes_project 16 15402285 15403429 + MGP_C3HHeJ_P0043245 Ccdc188 protein_coding protein_coding MGP_C3HHeJ_T0010030.1 MGP_C3HHeJ_G0008163.1 mouse_genomes_project 16 11099244 11099310 - Gm27671 miRNA miRNA MGP_C3HHeJ_T0043925.1 MGP_C3HHeJ_G0022497.1 mouse_genomes_project 16 32947962 33037111 + MGP_C3HHeJ_P0043925 Hacd2 protein_coding protein_coding MGP_C3HHeJ_T0045036.1 MGP_C3HHeJ_G0022812.1 mouse_genomes_project 16 96278425 96287795 + Wrb protein_coding retained_intron MGP_C3HHeJ_T0045037.1 MGP_C3HHeJ_G0022812.1 mouse_genomes_project 16 96278425 96279783 + Wrb protein_coding processed_transcript MGP_C3HHeJ_T0045038.1 MGP_C3HHeJ_G0022812.1 mouse_genomes_project 16 96278425 96290877 + MGP_C3HHeJ_P0045038 Wrb protein_coding protein_coding MGP_C3HHeJ_T0045039.1 MGP_C3HHeJ_G0022812.1 mouse_genomes_project 16 96278429 96284860 + MGP_C3HHeJ_P0045039 Wrb protein_coding protein_coding MGP_C3HHeJ_T0044711.1 MGP_C3HHeJ_G0022748.1 mouse_genomes_project 16 89028501 89029029 + MGP_C3HHeJ_P0044711 Krtap20-2 protein_coding protein_coding MGP_C3HHeJ_T0043602.1 MGP_C3HHeJ_G0022420.1 mouse_genomes_project 16 21977902 22583550 + MGP_C3HHeJ_P0043602 Lpp protein_coding protein_coding MGP_C3HHeJ_T0043603.1 MGP_C3HHeJ_G0022420.1 mouse_genomes_project 16 22035074 22583550 + MGP_C3HHeJ_P0043603 Lpp protein_coding protein_coding MGP_C3HHeJ_T0043604.1 MGP_C3HHeJ_G0022420.1 mouse_genomes_project 16 22308367 22583550 + MGP_C3HHeJ_P0043604 Lpp protein_coding protein_coding MGP_C3HHeJ_T0043220.1 MGP_C3HHeJ_G0022328.1 mouse_genomes_project 16 15042653 15054646 - MGP_C3HHeJ_P0043220 Dgcr14 protein_coding protein_coding MGP_C3HHeJ_T0043456.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17964722 17976930 + MGP_C3HHeJ_P0043456 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043457.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17964724 17976460 + MGP_C3HHeJ_P0043457 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043458.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970257 17990381 + MGP_C3HHeJ_P0043458 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043459.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970280 17990380 + MGP_C3HHeJ_P0043459 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043460.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970283 17990378 + MGP_C3HHeJ_P0043460 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043461.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970283 17981349 + MGP_C3HHeJ_P0043461 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043462.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970289 17990380 + MGP_C3HHeJ_P0043462 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043463.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970304 17981355 + MGP_C3HHeJ_P0043463 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043464.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970305 17981355 + MGP_C3HHeJ_P0043464 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043465.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970357 17976806 + MGP_C3HHeJ_P0043465 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043466.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970357 17990381 + MGP_C3HHeJ_P0043466 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043467.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970829 17990381 + MGP_C3HHeJ_P0043467 Eif4g1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043468.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970932 17975333 + MGP_C3HHeJ_P0043468 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043469.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970954 17990380 + MGP_C3HHeJ_P0043469 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043470.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17970973 17976198 + MGP_C3HHeJ_P0043470 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043471.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17971051 17990378 + MGP_C3HHeJ_P0043471 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043472.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17971348 17976194 + MGP_C3HHeJ_P0043472 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043473.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17971645 17976209 + MGP_C3HHeJ_P0043473 Eif4g1 protein_coding protein_coding MGP_C3HHeJ_T0043474.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17975810 17990378 + Eif4g1 protein_coding retained_intron MGP_C3HHeJ_T0043475.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17975940 17977120 + Eif4g1 protein_coding processed_transcript MGP_C3HHeJ_T0043476.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17978551 17979246 + Eif4g1 protein_coding retained_intron MGP_C3HHeJ_T0043477.1 MGP_C3HHeJ_G0022382.1 mouse_genomes_project 16 17986492 17987176 + Eif4g1 protein_coding retained_intron MGP_C3HHeJ_T0044512.1 MGP_C3HHeJ_G0022664.1 mouse_genomes_project 16 58370662 58397055 - MGP_C3HHeJ_P0044512 Arl6 protein_coding protein_coding MGP_C3HHeJ_T0044513.1 MGP_C3HHeJ_G0022664.1 mouse_genomes_project 16 58371041 58397279 - MGP_C3HHeJ_P0044513 Arl6 protein_coding protein_coding MGP_C3HHeJ_T0044514.1 MGP_C3HHeJ_G0022664.1 mouse_genomes_project 16 58371318 58390408 - MGP_C3HHeJ_P0044514 Arl6 protein_coding protein_coding MGP_C3HHeJ_T0044515.1 MGP_C3HHeJ_G0022664.1 mouse_genomes_project 16 58378926 58397017 - MGP_C3HHeJ_P0044515 Arl6 protein_coding protein_coding MGP_C3HHeJ_T0017304.1 MGP_C3HHeJ_G0015090.1 mouse_genomes_project 16 91382689 91387711 + A930006K02Rik processed_transcript processed_transcript MGP_C3HHeJ_T0044227.1 MGP_C3HHeJ_G0022573.1 mouse_genomes_project 16 43114002 43142878 + MGP_C3HHeJ_P0044227 protein_coding protein_coding MGP_C3HHeJ_T0044555.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69545535 69801507 + MGP_C3HHeJ_P0044555 Gbe1 protein_coding protein_coding MGP_C3HHeJ_T0044556.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69545649 69600950 + Gbe1 protein_coding retained_intron MGP_C3HHeJ_T0044557.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69545650 69774904 + Gbe1 protein_coding retained_intron MGP_C3HHeJ_T0044558.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69545650 69774473 + MGP_C3HHeJ_P0044558 Gbe1 protein_coding protein_coding MGP_C3HHeJ_T0044559.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69545673 69801507 + MGP_C3HHeJ_P0044559 Gbe1 protein_coding protein_coding MGP_C3HHeJ_T0044560.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69545720 69801505 + MGP_C3HHeJ_P0044560 Gbe1 protein_coding protein_coding MGP_C3HHeJ_T0044561.1 MGP_C3HHeJ_G0022681.1 mouse_genomes_project 16 69792883 69801288 + Gbe1 protein_coding retained_intron MGP_C3HHeJ_T0010060.1 MGP_C3HHeJ_G0008193.1 mouse_genomes_project 16 49138900 49139014 + Mir6363 miRNA miRNA MGP_C3HHeJ_T0044935.1 MGP_C3HHeJ_G0022800.1 mouse_genomes_project 16 94375518 94383802 + MGP_C3HHeJ_P0044935 Ripply3 protein_coding protein_coding MGP_C3HHeJ_T0017303.1 MGP_C3HHeJ_G0015089.1 mouse_genomes_project 16 90940787 90952809 + 4931406G06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0044436.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57062701 57126860 + MGP_C3HHeJ_P0044436 Dcbld2 protein_coding protein_coding MGP_C3HHeJ_T0044437.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57112381 57122511 + Dcbld2 protein_coding processed_transcript MGP_C3HHeJ_T0044438.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57113036 57113737 + Dcbld2 protein_coding processed_transcript MGP_C3HHeJ_T0044439.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57113567 57120954 + Dcbld2 protein_coding retained_intron MGP_C3HHeJ_T0044440.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57117377 57122960 + Dcbld2 protein_coding processed_transcript MGP_C3HHeJ_T0044441.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57117421 57123857 + Dcbld2 protein_coding retained_intron MGP_C3HHeJ_T0044442.1 MGP_C3HHeJ_G0022631.1 mouse_genomes_project 16 57117423 57123920 + Dcbld2 protein_coding retained_intron MGP_C3HHeJ_T0044380.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54605019 54619134 - MGP_C3HHeJ_P0044380 Pcnp protein_coding protein_coding MGP_C3HHeJ_T0044381.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54605029 54619164 - MGP_C3HHeJ_P0044381 Pcnp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044382.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54606320 54619154 - Pcnp protein_coding processed_transcript MGP_C3HHeJ_T0044383.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54606519 54619144 - MGP_C3HHeJ_P0044383 Pcnp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044384.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54606552 54619174 - Pcnp protein_coding processed_transcript MGP_C3HHeJ_T0044385.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54606711 54614136 - MGP_C3HHeJ_P0044385 Pcnp protein_coding protein_coding MGP_C3HHeJ_T0044386.1 MGP_C3HHeJ_G0022615.1 mouse_genomes_project 16 54607629 54619164 - MGP_C3HHeJ_P0044386 Pcnp protein_coding protein_coding MGP_C3HHeJ_T0006767.1 MGP_C3HHeJ_G0005576.1 mouse_genomes_project 16 41699831 41709492 - Gm15713 lincRNA lincRNA MGP_C3HHeJ_T0042884.1 MGP_C3HHeJ_G0022257.1 mouse_genomes_project 16 8162623 8168884 + MGP_C3HHeJ_P0042884 Tnfrsf17 protein_coding protein_coding MGP_C3HHeJ_T0010082.1 MGP_C3HHeJ_G0008215.1 mouse_genomes_project 16 96160704 96160828 - Gm27833 miRNA miRNA MGP_C3HHeJ_T0042715.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558855 1559874 + MGP_C3HHeJ_P0042715 Smim22 protein_coding protein_coding MGP_C3HHeJ_T0042716.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558883 1559610 + Smim22 protein_coding retained_intron MGP_C3HHeJ_T0042717.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558904 1559877 + MGP_C3HHeJ_P0042717 Smim22 protein_coding protein_coding MGP_C3HHeJ_T0042718.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558919 1559877 + Smim22 protein_coding processed_transcript MGP_C3HHeJ_T0042719.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558919 1559877 + MGP_C3HHeJ_P0042719 Smim22 protein_coding protein_coding MGP_C3HHeJ_T0042720.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558919 1559874 + MGP_C3HHeJ_P0042720 Smim22 protein_coding protein_coding MGP_C3HHeJ_T0042721.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1558926 1559877 + Smim22 protein_coding processed_transcript MGP_C3HHeJ_T0042722.1 MGP_C3HHeJ_G0022214.1 mouse_genomes_project 16 1559335 1559877 + Smim22 protein_coding retained_intron MGP_C3HHeJ_T0043244.1 MGP_C3HHeJ_G0022335.1 mouse_genomes_project 16 15308298 15335250 + MGP_C3HHeJ_P0043244 Rtn4r protein_coding protein_coding MGP_C3HHeJ_T0000925.1 MGP_C3HHeJ_G0000864.1 mouse_genomes_project 16 38501305 38501744 + TEC TEC MGP_C3HHeJ_T0012997.1 MGP_C3HHeJ_G0011101.1 mouse_genomes_project 16 16174024 16174313 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006794.1 MGP_C3HHeJ_G0005593.1 mouse_genomes_project 16 90610433 90612487 + Gm17518 lincRNA lincRNA MGP_C3HHeJ_T0042807.1 MGP_C3HHeJ_G0022239.1 mouse_genomes_project 16 7213911 7226384 + MGP_C3HHeJ_P0042807 Nubp1 protein_coding protein_coding MGP_C3HHeJ_T0042808.1 MGP_C3HHeJ_G0022239.1 mouse_genomes_project 16 7213912 7223628 + Nubp1 protein_coding processed_transcript MGP_C3HHeJ_T0042809.1 MGP_C3HHeJ_G0022239.1 mouse_genomes_project 16 7213917 7222507 + Nubp1 protein_coding retained_intron MGP_C3HHeJ_T0042810.1 MGP_C3HHeJ_G0022239.1 mouse_genomes_project 16 7213933 7226384 + Nubp1 protein_coding retained_intron MGP_C3HHeJ_T0042811.1 MGP_C3HHeJ_G0022239.1 mouse_genomes_project 16 7214027 7223393 + Nubp1 protein_coding retained_intron MGP_C3HHeJ_T0042813.1 MGP_C3HHeJ_G0022239.1 mouse_genomes_project 16 7223191 7225302 + Nubp1 protein_coding processed_transcript MGP_C3HHeJ_T0099027.1 MGP_C3HHeJ_G0037221.1 mouse_genomes_project 16 14071661 14071756 - Gm22558 snRNA snRNA MGP_C3HHeJ_T0043097.1 MGP_C3HHeJ_G0022305.1 mouse_genomes_project 16 14312111 14317898 + MGP_C3HHeJ_P0043097 Rimbp3 protein_coding protein_coding MGP_C3HHeJ_T0044710.1 MGP_C3HHeJ_G0022747.1 mouse_genomes_project 16 89000528 89000993 + MGP_C3HHeJ_P0044710 1110057P08Rik protein_coding protein_coding MGP_C3HHeJ_T0043391.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17603511 17701569 - MGP_C3HHeJ_P0043391 Abcc5 protein_coding protein_coding MGP_C3HHeJ_T0043392.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17603514 17701510 - MGP_C3HHeJ_P0043392 Abcc5 protein_coding protein_coding MGP_C3HHeJ_T0043393.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17603516 17674789 - Abcc5 protein_coding retained_intron MGP_C3HHeJ_T0043394.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17611135 17637886 - Abcc5 protein_coding processed_transcript MGP_C3HHeJ_T0043395.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17617659 17638080 - Abcc5 protein_coding retained_intron MGP_C3HHeJ_T0043396.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17642756 17651881 - Abcc5 protein_coding retained_intron MGP_C3HHeJ_T0043397.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17653722 17671627 - Abcc5 protein_coding retained_intron MGP_C3HHeJ_T0043398.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17667898 17701161 - MGP_C3HHeJ_P0043398 Abcc5 protein_coding protein_coding MGP_C3HHeJ_T0043399.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17673984 17675454 - Abcc5 protein_coding retained_intron MGP_C3HHeJ_T0043400.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17675927 17701499 - Abcc5 protein_coding retained_intron MGP_C3HHeJ_T0043401.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17675928 17701529 - MGP_C3HHeJ_P0043401 Abcc5 protein_coding protein_coding MGP_C3HHeJ_T0043402.1 MGP_C3HHeJ_G0022372.1 mouse_genomes_project 16 17675929 17679888 - Abcc5 protein_coding processed_transcript MGP_C3HHeJ_T0042733.1 MGP_C3HHeJ_G0022216.1 mouse_genomes_project 16 1566181 1604341 - MGP_C3HHeJ_P0042733 Glyr1 protein_coding protein_coding MGP_C3HHeJ_T0042734.1 MGP_C3HHeJ_G0022216.1 mouse_genomes_project 16 1566181 1604341 - MGP_C3HHeJ_P0042734 Glyr1 protein_coding protein_coding MGP_C3HHeJ_T0043825.1 MGP_C3HHeJ_G0022478.1 mouse_genomes_project 16 30626948 30634036 - MGP_C3HHeJ_P0043825 Gm933 protein_coding protein_coding MGP_C3HHeJ_T0013014.1 MGP_C3HHeJ_G0011118.1 mouse_genomes_project 16 29713957 29714837 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043337.1 MGP_C3HHeJ_G0022353.1 mouse_genomes_project 16 16063181 16066771 + MGP_C3HHeJ_P0043337 2510002D24Rik protein_coding protein_coding MGP_C3HHeJ_T0043338.1 MGP_C3HHeJ_G0022353.1 mouse_genomes_project 16 16063184 16063991 + MGP_C3HHeJ_P0043338 2510002D24Rik protein_coding protein_coding MGP_C3HHeJ_T0043339.1 MGP_C3HHeJ_G0022353.1 mouse_genomes_project 16 16063184 16066656 + MGP_C3HHeJ_P0043339 2510002D24Rik protein_coding protein_coding MGP_C3HHeJ_T0043341.1 MGP_C3HHeJ_G0022353.1 mouse_genomes_project 16 16063258 16066404 + 2510002D24Rik protein_coding retained_intron MGP_C3HHeJ_T0042573.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 245686 252641 + MGP_C3HHeJ_P0042573 Zfp263 protein_coding protein_coding MGP_C3HHeJ_T0042574.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 245768 252650 + Zfp263 protein_coding retained_intron MGP_C3HHeJ_T0042575.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 245775 251754 + Zfp263 protein_coding processed_transcript MGP_C3HHeJ_T0042576.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 245825 252650 + MGP_C3HHeJ_P0042576 Zfp263 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042577.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 245953 251141 + Zfp263 protein_coding processed_transcript MGP_C3HHeJ_T0042578.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 246190 250966 + Zfp263 protein_coding processed_transcript MGP_C3HHeJ_T0042579.1 MGP_C3HHeJ_G0022182.1 mouse_genomes_project 16 249746 252644 + MGP_C3HHeJ_P0042579 Zfp263 protein_coding protein_coding MGP_C3HHeJ_T0099051.1 MGP_C3HHeJ_G0037245.1 mouse_genomes_project 16 37060069 37060168 + Gm22500 snRNA snRNA MGP_C3HHeJ_T0100295.1 MGP_C3HHeJ_G0038489.1 mouse_genomes_project 16 29862695 29862828 + Gm26419 snoRNA snoRNA MGP_C3HHeJ_T0043539.1 MGP_C3HHeJ_G0022400.1 mouse_genomes_project 16 19914833 20106246 - MGP_C3HHeJ_P0043539 Dgkg protein_coding protein_coding MGP_C3HHeJ_T0043540.1 MGP_C3HHeJ_G0022400.1 mouse_genomes_project 16 19915594 20106294 - MGP_C3HHeJ_P0043540 Dgkg protein_coding protein_coding MGP_C3HHeJ_T0043541.1 MGP_C3HHeJ_G0022400.1 mouse_genomes_project 16 19996410 20106261 - MGP_C3HHeJ_P0043541 Dgkg protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043542.1 MGP_C3HHeJ_G0022400.1 mouse_genomes_project 16 20043276 20106101 - Dgkg protein_coding processed_transcript MGP_C3HHeJ_T0098058.1 MGP_C3HHeJ_G0036270.1 mouse_genomes_project 16 10921795 10921905 - Gm26213 rRNA rRNA MGP_C3HHeJ_T0043795.1 MGP_C3HHeJ_G0022474.1 mouse_genomes_project 16 30425022 30448874 + MGP_C3HHeJ_P0043795 Tfrc protein_coding protein_coding MGP_C3HHeJ_T0043796.1 MGP_C3HHeJ_G0022474.1 mouse_genomes_project 16 30425085 30439774 + MGP_C3HHeJ_P0043796 Tfrc protein_coding protein_coding MGP_C3HHeJ_T0043797.1 MGP_C3HHeJ_G0022474.1 mouse_genomes_project 16 30425352 30429345 + MGP_C3HHeJ_P0043797 Tfrc protein_coding protein_coding MGP_C3HHeJ_T0043798.1 MGP_C3HHeJ_G0022474.1 mouse_genomes_project 16 30431346 30433272 + Tfrc protein_coding retained_intron MGP_C3HHeJ_T0043799.1 MGP_C3HHeJ_G0022474.1 mouse_genomes_project 16 30434394 30436999 + Tfrc protein_coding retained_intron MGP_C3HHeJ_T0043800.1 MGP_C3HHeJ_G0022474.1 mouse_genomes_project 16 30440474 30448870 + Tfrc protein_coding retained_intron MGP_C3HHeJ_T0043080.1 MGP_C3HHeJ_G0022301.1 mouse_genomes_project 16 14216898 14219136 - MGP_C3HHeJ_P0043080 Sdf2l1 protein_coding protein_coding MGP_C3HHeJ_T0043976.1 MGP_C3HHeJ_G0022515.1 mouse_genomes_project 16 34251229 34260832 + MGP_C3HHeJ_P0043976 Gm5416 protein_coding protein_coding MGP_C3HHeJ_T0000040.1 MGP_C3HHeJ_G0000033.1 mouse_genomes_project 16 16449857 16449895 - MGP_C3HHeJ_P0000040 Iglj2 IG_J_gene IG_J_gene MGP_C3HHeJ_T0003607.1 MGP_C3HHeJ_G0003263.1 mouse_genomes_project 16 34961829 34978496 - 4930565N06Rik antisense antisense MGP_C3HHeJ_T0044910.1 MGP_C3HHeJ_G0022793.1 mouse_genomes_project 16 93697831 93705541 + MGP_C3HHeJ_P0044910 Cbr3 protein_coding protein_coding MGP_C3HHeJ_T0042925.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10766037 10778885 + Ntan1 protein_coding processed_transcript MGP_C3HHeJ_T0042926.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10766059 10779002 + Ntan1 protein_coding processed_transcript MGP_C3HHeJ_T0042927.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10766066 10782664 + Ntan1 protein_coding processed_transcript MGP_C3HHeJ_T0042928.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10766104 10773950 + Ntan1 protein_coding retained_intron MGP_C3HHeJ_T0042929.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10766116 10782667 + MGP_C3HHeJ_P0042929 Ntan1 protein_coding protein_coding MGP_C3HHeJ_T0042930.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10778057 10779149 + Ntan1 protein_coding retained_intron MGP_C3HHeJ_T0042933.1 MGP_C3HHeJ_G0022269.1 mouse_genomes_project 16 10780564 10781647 + Ntan1 protein_coding retained_intron MGP_C3HHeJ_T0000930.1 MGP_C3HHeJ_G0000869.1 mouse_genomes_project 16 76762048 76762700 + TEC TEC MGP_C3HHeJ_T0012985.1 MGP_C3HHeJ_G0011089.1 mouse_genomes_project 16 8345278 8346764 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044493.1 MGP_C3HHeJ_G0022653.1 mouse_genomes_project 16 57932771 57934277 - MGP_C3HHeJ_P0044493 Olfr201 protein_coding protein_coding MGP_C3HHeJ_T0013042.1 MGP_C3HHeJ_G0011146.1 mouse_genomes_project 16 55550792 55551735 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043598.1 MGP_C3HHeJ_G0022417.1 mouse_genomes_project 16 21461272 21462536 - MGP_C3HHeJ_P0043598 Sst protein_coding protein_coding MGP_C3HHeJ_T0044124.1 MGP_C3HHeJ_G0022552.1 mouse_genomes_project 16 36917041 36944468 - MGP_C3HHeJ_P0044124 Upk1b protein_coding protein_coding MGP_C3HHeJ_T0044005.1 MGP_C3HHeJ_G0022523.1 mouse_genomes_project 16 34868007 34956304 - Eaf2 protein_coding processed_transcript MGP_C3HHeJ_T0044006.1 MGP_C3HHeJ_G0022523.1 mouse_genomes_project 16 34868008 34956304 - Eaf2 protein_coding processed_transcript MGP_C3HHeJ_T0044007.1 MGP_C3HHeJ_G0022523.1 mouse_genomes_project 16 34868009 34882697 - MGP_C3HHeJ_P0044007 Eaf2 protein_coding protein_coding MGP_C3HHeJ_T0044008.1 MGP_C3HHeJ_G0022523.1 mouse_genomes_project 16 34868088 34901811 - Eaf2 protein_coding processed_transcript MGP_C3HHeJ_T0044009.1 MGP_C3HHeJ_G0022523.1 mouse_genomes_project 16 34868143 34901756 - MGP_C3HHeJ_P0044009 Eaf2 protein_coding protein_coding MGP_C3HHeJ_T0044010.1 MGP_C3HHeJ_G0022523.1 mouse_genomes_project 16 34896117 34956115 - Eaf2 protein_coding retained_intron MGP_C3HHeJ_T0042709.1 MGP_C3HHeJ_G0022209.1 mouse_genomes_project 16 1428372 1484169 + MGP_C3HHeJ_P0042709 Mgrn1 protein_coding protein_coding MGP_C3HHeJ_T0042710.1 MGP_C3HHeJ_G0022209.1 mouse_genomes_project 16 1428372 1484169 + MGP_C3HHeJ_P0042710 Mgrn1 protein_coding protein_coding MGP_C3HHeJ_T0099038.1 MGP_C3HHeJ_G0037232.1 mouse_genomes_project 16 23311665 23311772 - Gm24928 snRNA snRNA MGP_C3HHeJ_T0043551.1 MGP_C3HHeJ_G0022405.1 mouse_genomes_project 16 20354074 20399076 + MGP_C3HHeJ_P0043551 Fetub protein_coding unknown_likely_coding MGP_C3HHeJ_T0043552.1 MGP_C3HHeJ_G0022405.1 mouse_genomes_project 16 20380331 20399082 + MGP_C3HHeJ_P0043552 Fetub protein_coding protein_coding MGP_C3HHeJ_T0043553.1 MGP_C3HHeJ_G0022405.1 mouse_genomes_project 16 20382170 20399082 + MGP_C3HHeJ_P0043553 Fetub protein_coding protein_coding MGP_C3HHeJ_T0043554.1 MGP_C3HHeJ_G0022405.1 mouse_genomes_project 16 20382170 20399082 + MGP_C3HHeJ_P0043554 Fetub protein_coding protein_coding MGP_C3HHeJ_T0043555.1 MGP_C3HHeJ_G0022405.1 mouse_genomes_project 16 20384622 20399073 + MGP_C3HHeJ_P0043555 Fetub protein_coding protein_coding MGP_C3HHeJ_T0003619.1 MGP_C3HHeJ_G0003273.1 mouse_genomes_project 16 59427466 59433657 + Gm9017 antisense antisense MGP_C3HHeJ_T0003620.1 MGP_C3HHeJ_G0003273.1 mouse_genomes_project 16 59428455 59433937 + Gm9017 antisense antisense MGP_C3HHeJ_T0013028.1 MGP_C3HHeJ_G0011132.1 mouse_genomes_project 16 38110606 38111604 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042612.1 MGP_C3HHeJ_G0022190.1 mouse_genomes_project 16 444039 475012 - MGP_C3HHeJ_P0042612 Nlrc3 protein_coding protein_coding MGP_C3HHeJ_T0042613.1 MGP_C3HHeJ_G0022190.1 mouse_genomes_project 16 444642 475099 - MGP_C3HHeJ_P0042613 Nlrc3 protein_coding protein_coding MGP_C3HHeJ_T0042614.1 MGP_C3HHeJ_G0022190.1 mouse_genomes_project 16 447497 475099 - Nlrc3 protein_coding retained_intron MGP_C3HHeJ_T0042615.1 MGP_C3HHeJ_G0022190.1 mouse_genomes_project 16 447506 462879 - Nlrc3 protein_coding retained_intron MGP_C3HHeJ_T0044432.1 MGP_C3HHeJ_G0022629.1 mouse_genomes_project 16 55987501 56210770 + MGP_C3HHeJ_P0044432 Filip1l protein_coding protein_coding MGP_C3HHeJ_T0044433.1 MGP_C3HHeJ_G0022629.1 mouse_genomes_project 16 55987685 56150865 + MGP_C3HHeJ_P0044433 Filip1l protein_coding protein_coding MGP_C3HHeJ_T0044434.1 MGP_C3HHeJ_G0022629.1 mouse_genomes_project 16 56185692 56210448 + MGP_C3HHeJ_P0044434 Filip1l protein_coding protein_coding MGP_C3HHeJ_T0006779.1 MGP_C3HHeJ_G0005583.1 mouse_genomes_project 16 55523285 55531266 + lincRNA lincRNA MGP_C3HHeJ_T0099034.1 MGP_C3HHeJ_G0037228.1 mouse_genomes_project 16 19652207 19652315 + Gm25810 snRNA snRNA MGP_C3HHeJ_T0013049.1 MGP_C3HHeJ_G0011153.1 mouse_genomes_project 16 74289910 74290918 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043932.1 MGP_C3HHeJ_G0022500.1 mouse_genomes_project 16 33342940 33437791 - MGP_C3HHeJ_P0043932 Pdia5 protein_coding protein_coding MGP_C3HHeJ_T0043926.1 MGP_C3HHeJ_G0022498.1 mouse_genomes_project 16 33087522 33250186 + MGP_C3HHeJ_P0043926 Adcy5 protein_coding protein_coding MGP_C3HHeJ_T0099055.1 MGP_C3HHeJ_G0037249.1 mouse_genomes_project 16 47321389 47321493 - Gm22576 snRNA snRNA MGP_C3HHeJ_T0044407.1 MGP_C3HHeJ_G0022619.1 mouse_genomes_project 16 55085655 55303232 + MGP_C3HHeJ_P0044407 Abi3bp protein_coding protein_coding MGP_C3HHeJ_T0044408.1 MGP_C3HHeJ_G0022619.1 mouse_genomes_project 16 55085655 55303232 + MGP_C3HHeJ_P0044408 Abi3bp protein_coding protein_coding MGP_C3HHeJ_T0044409.1 MGP_C3HHeJ_G0022619.1 mouse_genomes_project 16 55085655 55303232 + MGP_C3HHeJ_P0044409 Abi3bp protein_coding protein_coding MGP_C3HHeJ_T0044410.1 MGP_C3HHeJ_G0022619.1 mouse_genomes_project 16 55085655 55303232 + MGP_C3HHeJ_P0044410 Abi3bp protein_coding protein_coding MGP_C3HHeJ_T0044411.1 MGP_C3HHeJ_G0022619.1 mouse_genomes_project 16 55085723 55303242 + MGP_C3HHeJ_P0044411 Abi3bp protein_coding unknown_likely_coding MGP_C3HHeJ_T0044168.1 MGP_C3HHeJ_G0022561.1 mouse_genomes_project 16 42187349 42238425 + MGP_C3HHeJ_P0044168 Ccdc191 protein_coding protein_coding MGP_C3HHeJ_T0044169.1 MGP_C3HHeJ_G0022561.1 mouse_genomes_project 16 42187352 42265005 + MGP_C3HHeJ_P0044169 Ccdc191 protein_coding protein_coding MGP_C3HHeJ_T0044170.1 MGP_C3HHeJ_G0022561.1 mouse_genomes_project 16 42187390 42207610 + MGP_C3HHeJ_P0044170 Ccdc191 protein_coding protein_coding MGP_C3HHeJ_T0044171.1 MGP_C3HHeJ_G0022561.1 mouse_genomes_project 16 42187441 42264395 + MGP_C3HHeJ_P0044171 Ccdc191 protein_coding protein_coding MGP_C3HHeJ_T0044172.1 MGP_C3HHeJ_G0022561.1 mouse_genomes_project 16 42237860 42243646 + Ccdc191 protein_coding processed_transcript MGP_C3HHeJ_T0044173.1 MGP_C3HHeJ_G0022561.1 mouse_genomes_project 16 42237981 42265005 + MGP_C3HHeJ_P0044173 Ccdc191 protein_coding protein_coding MGP_C3HHeJ_T0010067.1 MGP_C3HHeJ_G0008200.1 mouse_genomes_project 16 64417659 64417769 + Gm23659 miRNA miRNA MGP_C3HHeJ_T0044693.1 MGP_C3HHeJ_G0022732.1 mouse_genomes_project 16 88725142 88725625 - MGP_C3HHeJ_P0044693 Krtap19-5 protein_coding protein_coding MGP_C3HHeJ_T0099062.1 MGP_C3HHeJ_G0037256.1 mouse_genomes_project 16 65261498 65261605 + Gm22448 snRNA snRNA MGP_C3HHeJ_T0097868.1 MGP_C3HHeJ_G0036080.1 mouse_genomes_project 16 34279745 34279839 - pseudogene pseudogene MGP_C3HHeJ_T0011315.1 MGP_C3HHeJ_G0009448.1 mouse_genomes_project 16 39517374 39517537 - Gm27587 misc_RNA misc_RNA MGP_C3HHeJ_T0042913.1 MGP_C3HHeJ_G0022266.1 mouse_genomes_project 16 10600565 10608232 + MGP_C3HHeJ_P0042913 3110001I22Rik protein_coding protein_coding MGP_C3HHeJ_T0017301.1 MGP_C3HHeJ_G0015088.1 mouse_genomes_project 16 90906949 90912204 + 4930404I05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017302.1 MGP_C3HHeJ_G0015088.1 mouse_genomes_project 16 90909421 90912444 + 4930404I05Rik processed_transcript processed_transcript MGP_C3HHeJ_T0044458.1 MGP_C3HHeJ_G0022634.1 mouse_genomes_project 16 57298283 57301856 - MGP_C3HHeJ_P0044458 E330017A01Rik protein_coding protein_coding MGP_C3HHeJ_T0043004.1 MGP_C3HHeJ_G0022290.1 mouse_genomes_project 16 13332191 13384192 - MGP_C3HHeJ_P0043004 Dnm1l protein_coding protein_coding MGP_C3HHeJ_T0043005.1 MGP_C3HHeJ_G0022290.1 mouse_genomes_project 16 13332191 13384192 - MGP_C3HHeJ_P0043005 Dnm1l protein_coding protein_coding MGP_C3HHeJ_T0043006.1 MGP_C3HHeJ_G0022290.1 mouse_genomes_project 16 13332191 13384192 - MGP_C3HHeJ_P0043006 Dnm1l protein_coding protein_coding MGP_C3HHeJ_T0043988.1 MGP_C3HHeJ_G0022521.1 mouse_genomes_project 16 34767234 34803517 + MGP_C3HHeJ_P0043988 Ildr1 protein_coding protein_coding MGP_C3HHeJ_T0043989.1 MGP_C3HHeJ_G0022521.1 mouse_genomes_project 16 34767286 34793104 + Ildr1 protein_coding retained_intron MGP_C3HHeJ_T0043990.1 MGP_C3HHeJ_G0022521.1 mouse_genomes_project 16 34767413 34802328 + MGP_C3HHeJ_P0043990 Ildr1 protein_coding protein_coding MGP_C3HHeJ_T0043991.1 MGP_C3HHeJ_G0022521.1 mouse_genomes_project 16 34791236 34799030 + Ildr1 protein_coding retained_intron MGP_C3HHeJ_T0044611.1 MGP_C3HHeJ_G0022700.1 mouse_genomes_project 16 84434671 84490880 + MGP_C3HHeJ_P0044611 Jam2 protein_coding protein_coding MGP_C3HHeJ_T0044612.1 MGP_C3HHeJ_G0022700.1 mouse_genomes_project 16 84434934 84475948 + MGP_C3HHeJ_P0044612 Jam2 protein_coding protein_coding MGP_C3HHeJ_T0044613.1 MGP_C3HHeJ_G0022700.1 mouse_genomes_project 16 84474358 84487838 + Jam2 protein_coding processed_transcript MGP_C3HHeJ_T0013035.1 MGP_C3HHeJ_G0011139.1 mouse_genomes_project 16 43794355 43796957 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003592.1 MGP_C3HHeJ_G0003253.1 mouse_genomes_project 16 29203175 29203591 - Gm15743 antisense antisense MGP_C3HHeJ_T0003593.1 MGP_C3HHeJ_G0003253.1 mouse_genomes_project 16 29203175 29205076 - Gm15743 antisense antisense MGP_C3HHeJ_T0043967.1 MGP_C3HHeJ_G0022510.1 mouse_genomes_project 16 34039352 34061125 + MGP_C3HHeJ_P0043967 Ccdc58 protein_coding protein_coding MGP_C3HHeJ_T0043968.1 MGP_C3HHeJ_G0022510.1 mouse_genomes_project 16 34039352 34061125 + MGP_C3HHeJ_P0043968 Ccdc58 protein_coding protein_coding MGP_C3HHeJ_T0043969.1 MGP_C3HHeJ_G0022510.1 mouse_genomes_project 16 34049163 34061125 + MGP_C3HHeJ_P0043969 Ccdc58 protein_coding protein_coding MGP_C3HHeJ_T0006739.1 MGP_C3HHeJ_G0005551.1 mouse_genomes_project 16 7738079 7740880 - Gm21859 lincRNA lincRNA MGP_C3HHeJ_T0042640.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 587174 727103 - MGP_C3HHeJ_P0042640 Crebbp protein_coding protein_coding MGP_C3HHeJ_T0042641.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 589547 724767 - MGP_C3HHeJ_P0042641 Crebbp protein_coding protein_coding MGP_C3HHeJ_T0042642.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 592456 595563 - Crebbp protein_coding retained_intron MGP_C3HHeJ_T0042643.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 593620 594415 - Crebbp protein_coding retained_intron MGP_C3HHeJ_T0042644.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 594199 600426 - MGP_C3HHeJ_P0042644 Crebbp protein_coding protein_coding MGP_C3HHeJ_T0042645.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 597658 636322 - MGP_C3HHeJ_P0042645 Crebbp protein_coding protein_coding MGP_C3HHeJ_T0042646.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 598009 601908 - MGP_C3HHeJ_P0042646 Crebbp protein_coding protein_coding MGP_C3HHeJ_T0042647.1 MGP_C3HHeJ_G0022195.1 mouse_genomes_project 16 626733 634303 - MGP_C3HHeJ_P0042647 Crebbp protein_coding protein_coding MGP_C3HHeJ_T0010055.1 MGP_C3HHeJ_G0008188.1 mouse_genomes_project 16 40552573 40552681 - Mir6540 miRNA miRNA MGP_C3HHeJ_T0042953.1 MGP_C3HHeJ_G0022272.1 mouse_genomes_project 16 10937997 10943292 - MGP_C3HHeJ_P0042953 Ifitm7 protein_coding protein_coding MGP_C3HHeJ_T0042954.1 MGP_C3HHeJ_G0022272.1 mouse_genomes_project 16 10939094 10940901 - MGP_C3HHeJ_P0042954 Ifitm7 protein_coding protein_coding MGP_C3HHeJ_T0044174.1 MGP_C3HHeJ_G0022562.1 mouse_genomes_project 16 42265720 42280432 - MGP_C3HHeJ_P0044174 Zdhhc23 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044175.1 MGP_C3HHeJ_G0022562.1 mouse_genomes_project 16 42269756 42279772 - MGP_C3HHeJ_P0044175 Zdhhc23 protein_coding protein_coding MGP_C3HHeJ_T0017299.1 MGP_C3HHeJ_G0015087.1 mouse_genomes_project 16 87265711 87273556 + B130034C11Rik processed_transcript retained_intron MGP_C3HHeJ_T0017300.1 MGP_C3HHeJ_G0015087.1 mouse_genomes_project 16 87265785 87273759 + B130034C11Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013041.1 MGP_C3HHeJ_G0011145.1 mouse_genomes_project 16 55384188 55384825 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011311.1 MGP_C3HHeJ_G0009444.1 mouse_genomes_project 16 20042677 20042869 + Gm22481 misc_RNA misc_RNA MGP_C3HHeJ_T0006750.1 MGP_C3HHeJ_G0005561.1 mouse_genomes_project 16 19187190 19199931 + 1300002E11Rik lincRNA lincRNA MGP_C3HHeJ_T0006751.1 MGP_C3HHeJ_G0005561.1 mouse_genomes_project 16 19187205 19203212 + 1300002E11Rik lincRNA lincRNA MGP_C3HHeJ_T0006752.1 MGP_C3HHeJ_G0005561.1 mouse_genomes_project 16 19187235 19199931 + 1300002E11Rik lincRNA lincRNA MGP_C3HHeJ_T0006797.1 MGP_C3HHeJ_G0005595.1 mouse_genomes_project 16 93381357 93422324 - 1700029J03Rik lincRNA lincRNA MGP_C3HHeJ_T0006798.1 MGP_C3HHeJ_G0005595.1 mouse_genomes_project 16 93386420 93458171 - 1700029J03Rik lincRNA lincRNA MGP_C3HHeJ_T0043970.1 MGP_C3HHeJ_G0022511.1 mouse_genomes_project 16 34093123 34104917 - MGP_C3HHeJ_P0043970 Csta1 protein_coding protein_coding MGP_C3HHeJ_T0043971.1 MGP_C3HHeJ_G0022511.1 mouse_genomes_project 16 34095346 34104881 - MGP_C3HHeJ_P0043971 Csta1 protein_coding protein_coding MGP_C3HHeJ_T0044477.1 MGP_C3HHeJ_G0022644.1 mouse_genomes_project 16 57596635 57597739 - MGP_C3HHeJ_P0044477 Olfr181 protein_coding protein_coding MGP_C3HHeJ_T0044478.1 MGP_C3HHeJ_G0022644.1 mouse_genomes_project 16 57596635 57599889 - MGP_C3HHeJ_P0044478 Olfr181 protein_coding protein_coding MGP_C3HHeJ_T0044479.1 MGP_C3HHeJ_G0022644.1 mouse_genomes_project 16 57597263 57599889 - MGP_C3HHeJ_P0044479 Olfr181 protein_coding protein_coding MGP_C3HHeJ_T0044480.1 MGP_C3HHeJ_G0022644.1 mouse_genomes_project 16 57597411 57599853 - MGP_C3HHeJ_P0044480 Olfr181 protein_coding protein_coding MGP_C3HHeJ_T0043421.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17876868 17885854 + MGP_C3HHeJ_P0043421 Vwa5b2 protein_coding protein_coding MGP_C3HHeJ_T0043422.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17876979 17878134 + Vwa5b2 protein_coding processed_transcript MGP_C3HHeJ_T0043423.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17876979 17892754 + MGP_C3HHeJ_P0043423 Vwa5b2 protein_coding protein_coding MGP_C3HHeJ_T0043424.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17876981 17878584 + Vwa5b2 protein_coding processed_transcript MGP_C3HHeJ_T0043425.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17877248 17878618 + Vwa5b2 protein_coding retained_intron MGP_C3HHeJ_T0043426.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17877435 17892760 + MGP_C3HHeJ_P0043426 Vwa5b2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043427.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17877456 17877929 + Vwa5b2 protein_coding retained_intron MGP_C3HHeJ_T0043428.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17877487 17879787 + Vwa5b2 protein_coding retained_intron MGP_C3HHeJ_T0043429.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17877543 17885849 + MGP_C3HHeJ_P0043429 Vwa5b2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043430.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17878553 17892751 + MGP_C3HHeJ_P0043430 Vwa5b2 protein_coding protein_coding MGP_C3HHeJ_T0043431.1 MGP_C3HHeJ_G0022377.1 mouse_genomes_project 16 17890161 17892754 + Vwa5b2 protein_coding retained_intron MGP_C3HHeJ_T0044423.1 MGP_C3HHeJ_G0022623.1 mouse_genomes_project 16 55667747 55704127 - MGP_C3HHeJ_P0044423 Tmem45a2 protein_coding protein_coding MGP_C3HHeJ_T0044683.1 MGP_C3HHeJ_G0022724.1 mouse_genomes_project 16 88586019 88586964 + MGP_C3HHeJ_P0044683 2310034C09Rik protein_coding protein_coding MGP_C3HHeJ_T0044431.1 MGP_C3HHeJ_G0022628.1 mouse_genomes_project 16 55936139 56237337 - MGP_C3HHeJ_P0044431 Cmss1 protein_coding protein_coding MGP_C3HHeJ_T0101771.1 MGP_C3HHeJ_G0039736.1 mouse_genomes_project 16 13706871 13706992 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0044223.1 MGP_C3HHeJ_G0022572.1 mouse_genomes_project 16 43083704 43093647 - MGP_C3HHeJ_P0044223 Gtpbp8 protein_coding protein_coding MGP_C3HHeJ_T0044224.1 MGP_C3HHeJ_G0022572.1 mouse_genomes_project 16 43086078 43093643 - MGP_C3HHeJ_P0044224 Gtpbp8 protein_coding protein_coding MGP_C3HHeJ_T0044225.1 MGP_C3HHeJ_G0022572.1 mouse_genomes_project 16 43086201 43093567 - MGP_C3HHeJ_P0044225 Gtpbp8 protein_coding protein_coding MGP_C3HHeJ_T0044226.1 MGP_C3HHeJ_G0022572.1 mouse_genomes_project 16 43091091 43093593 - MGP_C3HHeJ_P0044226 Gtpbp8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043821.1 MGP_C3HHeJ_G0022477.1 mouse_genomes_project 16 30599668 30619643 - MGP_C3HHeJ_P0043821 Muc20 protein_coding protein_coding MGP_C3HHeJ_T0043824.1 MGP_C3HHeJ_G0022477.1 mouse_genomes_project 16 30608269 30619643 - MGP_C3HHeJ_P0043824 Muc20 protein_coding protein_coding MGP_C3HHeJ_T0043159.1 MGP_C3HHeJ_G0022317.1 mouse_genomes_project 16 14700986 14704702 - Slc7a4 protein_coding retained_intron MGP_C3HHeJ_T0043160.1 MGP_C3HHeJ_G0022317.1 mouse_genomes_project 16 14701307 14704729 - MGP_C3HHeJ_P0043160 Slc7a4 protein_coding protein_coding MGP_C3HHeJ_T0043161.1 MGP_C3HHeJ_G0022317.1 mouse_genomes_project 16 14703433 14704662 - MGP_C3HHeJ_P0043161 Slc7a4 protein_coding protein_coding MGP_C3HHeJ_T0043162.1 MGP_C3HHeJ_G0022317.1 mouse_genomes_project 16 14703543 14704251 - MGP_C3HHeJ_P0043162 Slc7a4 protein_coding protein_coding MGP_C3HHeJ_T0043163.1 MGP_C3HHeJ_G0022317.1 mouse_genomes_project 16 14703719 14704702 - MGP_C3HHeJ_P0043163 Slc7a4 protein_coding protein_coding MGP_C3HHeJ_T0098056.1 MGP_C3HHeJ_G0036268.1 mouse_genomes_project 16 1897672 1897794 - n-R5s30 rRNA rRNA MGP_C3HHeJ_T0006799.1 MGP_C3HHeJ_G0005596.1 mouse_genomes_project 16 93815560 93818299 - 2310043M15Rik lincRNA lincRNA MGP_C3HHeJ_T0099032.1 MGP_C3HHeJ_G0037226.1 mouse_genomes_project 16 18044658 18044823 + Gm22741 snRNA snRNA MGP_C3HHeJ_T0010056.1 MGP_C3HHeJ_G0008189.1 mouse_genomes_project 16 41933120 41933203 + Mir568 miRNA miRNA MGP_C3HHeJ_T0044885.1 MGP_C3HHeJ_G0022785.1 mouse_genomes_project 16 92258178 92269938 + MGP_C3HHeJ_P0044885 Smim11 protein_coding protein_coding MGP_C3HHeJ_T0044886.1 MGP_C3HHeJ_G0022785.1 mouse_genomes_project 16 92258188 92268321 + MGP_C3HHeJ_P0044886 Smim11 protein_coding protein_coding MGP_C3HHeJ_T0013044.1 MGP_C3HHeJ_G0011148.1 mouse_genomes_project 16 59451578 59452514 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042675.1 MGP_C3HHeJ_G0022202.1 mouse_genomes_project 16 1171901 1182765 + MGP_C3HHeJ_P0042675 Vasn protein_coding protein_coding MGP_C3HHeJ_T0042676.1 MGP_C3HHeJ_G0022202.1 mouse_genomes_project 16 1171928 1179522 + Vasn protein_coding processed_transcript MGP_C3HHeJ_T0000922.1 MGP_C3HHeJ_G0000861.1 mouse_genomes_project 16 16498154 16499450 + TEC TEC MGP_C3HHeJ_T0045095.1 MGP_C3HHeJ_G0022829.1 mouse_genomes_project 16 98218122 98218356 + MGP_C3HHeJ_P0045095 Gm6020 protein_coding protein_coding MGP_C3HHeJ_T0097867.1 MGP_C3HHeJ_G0036079.1 mouse_genomes_project 16 29737765 29738190 - pseudogene pseudogene MGP_C3HHeJ_T0013008.1 MGP_C3HHeJ_G0011112.1 mouse_genomes_project 16 20711274 20711728 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000037.1 MGP_C3HHeJ_G0000030.1 mouse_genomes_project 16 16311210 16311248 - MGP_C3HHeJ_P0000037 Iglj3p IG_J_gene IG_J_gene MGP_C3HHeJ_T0042956.1 MGP_C3HHeJ_G0022274.1 mouse_genomes_project 16 11076557 11136707 - MGP_C3HHeJ_P0042956 Marf1 protein_coding protein_coding MGP_C3HHeJ_T0043740.1 MGP_C3HHeJ_G0022456.1 mouse_genomes_project 16 29736791 29738236 - MGP_C3HHeJ_P0043740 0610012G03Rik protein_coding protein_coding MGP_C3HHeJ_T0044242.1 MGP_C3HHeJ_G0022577.1 mouse_genomes_project 16 43430221 43430998 + Ccdc80 protein_coding processed_transcript MGP_C3HHeJ_T0044243.1 MGP_C3HHeJ_G0022577.1 mouse_genomes_project 16 43430273 43431707 + Ccdc80 protein_coding processed_transcript MGP_C3HHeJ_T0044244.1 MGP_C3HHeJ_G0022577.1 mouse_genomes_project 16 43430409 43431163 + Ccdc80 protein_coding processed_transcript MGP_C3HHeJ_T0044245.1 MGP_C3HHeJ_G0022577.1 mouse_genomes_project 16 43430431 43467748 + MGP_C3HHeJ_P0044245 Ccdc80 protein_coding protein_coding MGP_C3HHeJ_T0044246.1 MGP_C3HHeJ_G0022577.1 mouse_genomes_project 16 43430494 43431973 + Ccdc80 protein_coding processed_transcript MGP_C3HHeJ_T0044247.1 MGP_C3HHeJ_G0022577.1 mouse_genomes_project 16 43430855 43468007 + MGP_C3HHeJ_P0044247 Ccdc80 protein_coding protein_coding MGP_C3HHeJ_T0044890.1 MGP_C3HHeJ_G0022788.1 mouse_genomes_project 16 92356775 92430594 - MGP_C3HHeJ_P0044890 Rcan1 protein_coding protein_coding MGP_C3HHeJ_T0044891.1 MGP_C3HHeJ_G0022788.1 mouse_genomes_project 16 92356775 92364896 - MGP_C3HHeJ_P0044891 Rcan1 protein_coding protein_coding MGP_C3HHeJ_T0044258.1 MGP_C3HHeJ_G0022580.1 mouse_genomes_project 16 43562338 43588767 + MGP_C3HHeJ_P0044258 Btla protein_coding protein_coding MGP_C3HHeJ_T0044259.1 MGP_C3HHeJ_G0022580.1 mouse_genomes_project 16 43562360 43588770 + MGP_C3HHeJ_P0044259 Btla protein_coding protein_coding MGP_C3HHeJ_T0044761.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90831372 90906891 - MGP_C3HHeJ_P0044761 Synj1 protein_coding protein_coding MGP_C3HHeJ_T0044762.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90831373 90907009 - MGP_C3HHeJ_P0044762 Synj1 protein_coding protein_coding MGP_C3HHeJ_T0044763.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90831387 90845421 - MGP_C3HHeJ_P0044763 Synj1 protein_coding protein_coding MGP_C3HHeJ_T0044764.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90833938 90841657 - Synj1 protein_coding processed_transcript MGP_C3HHeJ_T0044765.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90834084 90839873 - MGP_C3HHeJ_P0044765 Synj1 protein_coding protein_coding MGP_C3HHeJ_T0044766.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90839477 90845426 - MGP_C3HHeJ_P0044766 Synj1 protein_coding protein_coding MGP_C3HHeJ_T0044767.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90855493 90906762 - Synj1 protein_coding retained_intron MGP_C3HHeJ_T0044768.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90859194 90906761 - MGP_C3HHeJ_P0044768 Synj1 protein_coding protein_coding MGP_C3HHeJ_T0044769.1 MGP_C3HHeJ_G0022763.1 mouse_genomes_project 16 90905014 90906764 - Synj1 protein_coding retained_intron MGP_C3HHeJ_T0044471.1 MGP_C3HHeJ_G0022641.1 mouse_genomes_project 16 57537916 57539675 - MGP_C3HHeJ_P0044471 Olfr177 protein_coding protein_coding MGP_C3HHeJ_T0044472.1 MGP_C3HHeJ_G0022641.1 mouse_genomes_project 16 57537916 57538846 - MGP_C3HHeJ_P0044472 Olfr177 protein_coding protein_coding MGP_C3HHeJ_T0006800.1 MGP_C3HHeJ_G0005597.1 mouse_genomes_project 16 95907764 95910053 - 2810404F17Rik lincRNA lincRNA MGP_C3HHeJ_T0042581.1 MGP_C3HHeJ_G0022184.1 mouse_genomes_project 16 343373 354713 + MGP_C3HHeJ_P0042581 Zfp174 protein_coding protein_coding MGP_C3HHeJ_T0100290.1 MGP_C3HHeJ_G0038484.1 mouse_genomes_project 16 20641818 20641947 + Gm26447 snoRNA snoRNA MGP_C3HHeJ_T0100329.1 MGP_C3HHeJ_G0038523.1 mouse_genomes_project 16 90473636 90473758 + Gm23406 snoRNA snoRNA MGP_C3HHeJ_T0042776.1 MGP_C3HHeJ_G0022231.1 mouse_genomes_project 16 5353158 5356294 + MGP_C3HHeJ_P0042776 Gm43786 protein_coding protein_coding MGP_C3HHeJ_T0042777.1 MGP_C3HHeJ_G0022231.1 mouse_genomes_project 16 5355218 5356300 + Gm43786 protein_coding processed_transcript MGP_C3HHeJ_T0044033.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35089163 35184138 + MGP_C3HHeJ_P0044033 Polq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044034.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35089163 35184543 + MGP_C3HHeJ_P0044034 Polq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044035.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35089163 35184138 + MGP_C3HHeJ_P0044035 Polq protein_coding protein_coding MGP_C3HHeJ_T0044036.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35089163 35184563 + MGP_C3HHeJ_P0044036 Polq protein_coding protein_coding MGP_C3HHeJ_T0044037.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35089192 35096891 + Polq protein_coding retained_intron MGP_C3HHeJ_T0044038.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35125008 35149571 + Polq protein_coding retained_intron MGP_C3HHeJ_T0044039.1 MGP_C3HHeJ_G0022528.1 mouse_genomes_project 16 35175057 35184563 + Polq protein_coding retained_intron MGP_C3HHeJ_T0044103.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36701350 36734231 + MGP_C3HHeJ_P0044103 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044104.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36705426 36735203 + MGP_C3HHeJ_P0044104 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044105.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36705426 36735203 + MGP_C3HHeJ_P0044105 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044106.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36705475 36728698 + MGP_C3HHeJ_P0044106 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044107.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36705500 36715627 + Tmem39a protein_coding processed_transcript MGP_C3HHeJ_T0044108.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36706803 36724441 + MGP_C3HHeJ_P0044108 Tmem39a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044109.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36717878 36727866 + Tmem39a protein_coding retained_intron MGP_C3HHeJ_T0044110.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36718201 36734483 + MGP_C3HHeJ_P0044110 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044111.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36724549 36733983 + MGP_C3HHeJ_P0044111 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044112.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36727856 36729331 + Tmem39a protein_coding retained_intron MGP_C3HHeJ_T0044113.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36727933 36729080 + Tmem39a protein_coding retained_intron MGP_C3HHeJ_T0044114.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36727948 36734186 + MGP_C3HHeJ_P0044114 Tmem39a protein_coding protein_coding MGP_C3HHeJ_T0044115.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36729651 36734387 + Tmem39a protein_coding processed_transcript MGP_C3HHeJ_T0044116.1 MGP_C3HHeJ_G0022549.1 mouse_genomes_project 16 36730479 36734347 + Tmem39a protein_coding retained_intron MGP_C3HHeJ_T0042989.1 MGP_C3HHeJ_G0022285.1 mouse_genomes_project 16 12640641 12693223 + Prkdc protein_coding retained_intron MGP_C3HHeJ_T0042990.1 MGP_C3HHeJ_G0022285.1 mouse_genomes_project 16 12640664 12845454 + MGP_C3HHeJ_P0042990 Prkdc protein_coding protein_coding MGP_C3HHeJ_T0043670.1 MGP_C3HHeJ_G0022440.1 mouse_genomes_project 16 27767748 27768934 + Hes1 protein_coding processed_transcript MGP_C3HHeJ_T0043671.1 MGP_C3HHeJ_G0022440.1 mouse_genomes_project 16 27768704 27771161 + MGP_C3HHeJ_P0043671 Hes1 protein_coding protein_coding MGP_C3HHeJ_T0043672.1 MGP_C3HHeJ_G0022440.1 mouse_genomes_project 16 27769461 27770488 + Hes1 protein_coding retained_intron MGP_C3HHeJ_T0043673.1 MGP_C3HHeJ_G0022440.1 mouse_genomes_project 16 27769702 27770684 + Hes1 protein_coding processed_transcript MGP_C3HHeJ_T0042837.1 MGP_C3HHeJ_G0022247.1 mouse_genomes_project 16 7606566 7607292 - MGP_C3HHeJ_P0042837 Prm2 protein_coding protein_coding MGP_C3HHeJ_T0042838.1 MGP_C3HHeJ_G0022247.1 mouse_genomes_project 16 7606723 7611414 - MGP_C3HHeJ_P0042838 Prm2 protein_coding protein_coding MGP_C3HHeJ_T0000934.1 MGP_C3HHeJ_G0000872.1 mouse_genomes_project 16 76797327 76800699 + TEC TEC MGP_C3HHeJ_T0044125.1 MGP_C3HHeJ_G0022553.1 mouse_genomes_project 16 36956706 36974596 - MGP_C3HHeJ_P0044125 4930435E12Rik protein_coding protein_coding MGP_C3HHeJ_T0044126.1 MGP_C3HHeJ_G0022553.1 mouse_genomes_project 16 36970199 36974578 - 4930435E12Rik protein_coding retained_intron MGP_C3HHeJ_T0017280.1 MGP_C3HHeJ_G0015083.1 mouse_genomes_project 16 57059136 57062535 - 4930461C15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0044736.1 MGP_C3HHeJ_G0022758.1 mouse_genomes_project 16 90602233 90610326 - Mis18a protein_coding retained_intron MGP_C3HHeJ_T0044737.1 MGP_C3HHeJ_G0022758.1 mouse_genomes_project 16 90602233 90610326 - MGP_C3HHeJ_P0044737 Mis18a protein_coding protein_coding MGP_C3HHeJ_T0044738.1 MGP_C3HHeJ_G0022758.1 mouse_genomes_project 16 90604368 90610061 - Mis18a protein_coding retained_intron MGP_C3HHeJ_T0010071.1 MGP_C3HHeJ_G0008204.1 mouse_genomes_project 16 76986689 76986754 + Mir99a miRNA miRNA MGP_C3HHeJ_T0000016.1 MGP_C3HHeJ_G0000011.1 mouse_genomes_project 16 16306457 16306911 - MGP_C3HHeJ_P0000016 Iglc1 IG_C_gene IG_C_gene MGP_C3HHeJ_T0006743.1 MGP_C3HHeJ_G0005555.1 mouse_genomes_project 16 9706437 9744308 + 1700003L19Rik lincRNA lincRNA MGP_C3HHeJ_T0099037.1 MGP_C3HHeJ_G0037231.1 mouse_genomes_project 16 21990975 21991038 - Gm24440 snRNA snRNA MGP_C3HHeJ_T0003621.1 MGP_C3HHeJ_G0003274.1 mouse_genomes_project 16 65920059 65934355 + 4933411O13Rik antisense antisense MGP_C3HHeJ_T0099054.1 MGP_C3HHeJ_G0037248.1 mouse_genomes_project 16 45891114 45891221 - Gm24651 snRNA snRNA MGP_C3HHeJ_T0003580.1 MGP_C3HHeJ_G0003242.1 mouse_genomes_project 16 8544897 8548586 - Gm4279 antisense antisense MGP_C3HHeJ_T0042892.1 MGP_C3HHeJ_G0022259.1 mouse_genomes_project 16 8662982 8769440 - MGP_C3HHeJ_P0042892 Cpped1 protein_coding protein_coding MGP_C3HHeJ_T0042893.1 MGP_C3HHeJ_G0022259.1 mouse_genomes_project 16 8662988 8769439 - MGP_C3HHeJ_P0042893 Cpped1 protein_coding protein_coding MGP_C3HHeJ_T0042894.1 MGP_C3HHeJ_G0022259.1 mouse_genomes_project 16 8688153 8769413 - Cpped1 protein_coding retained_intron MGP_C3HHeJ_T0042895.1 MGP_C3HHeJ_G0022259.1 mouse_genomes_project 16 8689142 8769415 - MGP_C3HHeJ_P0042895 Cpped1 protein_coding protein_coding MGP_C3HHeJ_T0042896.1 MGP_C3HHeJ_G0022259.1 mouse_genomes_project 16 8738782 8769462 - MGP_C3HHeJ_P0042896 Cpped1 protein_coding protein_coding MGP_C3HHeJ_T0006781.1 MGP_C3HHeJ_G0005585.1 mouse_genomes_project 16 55911993 55913463 + lincRNA lincRNA MGP_C3HHeJ_T0012989.1 MGP_C3HHeJ_G0011093.1 mouse_genomes_project 16 11029812 11030416 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013037.1 MGP_C3HHeJ_G0011141.1 mouse_genomes_project 16 45463002 45465881 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013047.1 MGP_C3HHeJ_G0011151.1 mouse_genomes_project 16 63895712 63896609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099059.1 MGP_C3HHeJ_G0037253.1 mouse_genomes_project 16 54355955 54356055 - Gm26369 snRNA snRNA MGP_C3HHeJ_T0099047.1 MGP_C3HHeJ_G0037241.1 mouse_genomes_project 16 34459545 34459652 + Gm22349 snRNA snRNA MGP_C3HHeJ_T0003575.1 MGP_C3HHeJ_G0003238.1 mouse_genomes_project 16 536905 541586 - Gm15879 antisense antisense MGP_C3HHeJ_T0003576.1 MGP_C3HHeJ_G0003238.1 mouse_genomes_project 16 538437 541914 - Gm15879 antisense antisense MGP_C3HHeJ_T0044810.1 MGP_C3HHeJ_G0022776.1 mouse_genomes_project 16 91558701 91585083 - MGP_C3HHeJ_P0044810 Gart protein_coding protein_coding MGP_C3HHeJ_T0044811.1 MGP_C3HHeJ_G0022776.1 mouse_genomes_project 16 91558908 91581041 - MGP_C3HHeJ_P0044811 Gart protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044812.1 MGP_C3HHeJ_G0022776.1 mouse_genomes_project 16 91571299 91585066 - MGP_C3HHeJ_P0044812 Gart protein_coding protein_coding MGP_C3HHeJ_T0043898.1 MGP_C3HHeJ_G0022492.1 mouse_genomes_project 16 31854893 31867156 - MGP_C3HHeJ_P0043898 Umps protein_coding protein_coding MGP_C3HHeJ_T0043899.1 MGP_C3HHeJ_G0022492.1 mouse_genomes_project 16 31854905 31867121 - MGP_C3HHeJ_P0043899 Umps protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045063.1 MGP_C3HHeJ_G0022817.1 mouse_genomes_project 16 96566890 96588211 - MGP_C3HHeJ_P0045063 Itgb2l protein_coding protein_coding MGP_C3HHeJ_T0045064.1 MGP_C3HHeJ_G0022817.1 mouse_genomes_project 16 96566894 96588206 - MGP_C3HHeJ_P0045064 Itgb2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045065.1 MGP_C3HHeJ_G0022817.1 mouse_genomes_project 16 96566978 96588204 - MGP_C3HHeJ_P0045065 Itgb2l protein_coding protein_coding MGP_C3HHeJ_T0045066.1 MGP_C3HHeJ_G0022817.1 mouse_genomes_project 16 96571332 96573747 - Itgb2l protein_coding processed_transcript MGP_C3HHeJ_T0044248.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43473936 43493285 - MGP_C3HHeJ_P0044248 Slc35a5 protein_coding protein_coding MGP_C3HHeJ_T0044249.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43476310 43493145 - MGP_C3HHeJ_P0044249 Slc35a5 protein_coding protein_coding MGP_C3HHeJ_T0044250.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43478378 43486286 - Slc35a5 protein_coding retained_intron MGP_C3HHeJ_T0044251.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43478521 43493223 - MGP_C3HHeJ_P0044251 Slc35a5 protein_coding protein_coding MGP_C3HHeJ_T0044252.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43478541 43492762 - MGP_C3HHeJ_P0044252 Slc35a5 protein_coding protein_coding MGP_C3HHeJ_T0044253.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43486926 43493234 - Slc35a5 protein_coding retained_intron MGP_C3HHeJ_T0044254.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43486969 43493032 - MGP_C3HHeJ_P0044254 Slc35a5 protein_coding protein_coding MGP_C3HHeJ_T0044255.1 MGP_C3HHeJ_G0022578.1 mouse_genomes_project 16 43489054 43493179 - Slc35a5 protein_coding retained_intron MGP_C3HHeJ_T0000939.1 MGP_C3HHeJ_G0000877.1 mouse_genomes_project 16 76947600 76950716 + TEC TEC MGP_C3HHeJ_T0044460.1 MGP_C3HHeJ_G0022636.1 mouse_genomes_project 16 57383478 57384768 - MGP_C3HHeJ_P0044460 Gpr15 protein_coding protein_coding MGP_C3HHeJ_T0042625.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541008 543323 + MGP_C3HHeJ_P0042625 Dnase1 protein_coding protein_coding MGP_C3HHeJ_T0042626.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541036 544091 + MGP_C3HHeJ_P0042626 Dnase1 protein_coding protein_coding MGP_C3HHeJ_T0042627.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541039 542088 + MGP_C3HHeJ_P0042627 Dnase1 protein_coding protein_coding MGP_C3HHeJ_T0042628.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541097 544091 + MGP_C3HHeJ_P0042628 Dnase1 protein_coding protein_coding MGP_C3HHeJ_T0042629.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541164 544090 + Dnase1 protein_coding retained_intron MGP_C3HHeJ_T0042630.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541167 544091 + Dnase1 protein_coding retained_intron MGP_C3HHeJ_T0042631.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541221 543942 + MGP_C3HHeJ_P0042631 Dnase1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042632.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541342 542327 + Dnase1 protein_coding retained_intron MGP_C3HHeJ_T0042633.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 541370 543406 + Dnase1 protein_coding retained_intron MGP_C3HHeJ_T0042634.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 542288 542938 + Dnase1 protein_coding retained_intron MGP_C3HHeJ_T0042635.1 MGP_C3HHeJ_G0022193.1 mouse_genomes_project 16 543196 544091 + MGP_C3HHeJ_P0042635 Dnase1 protein_coding protein_coding MGP_C3HHeJ_T0044540.1 MGP_C3HHeJ_G0022676.1 mouse_genomes_project 16 64507003 64520117 + MGP_C3HHeJ_P0044540 Pou1f1 protein_coding protein_coding MGP_C3HHeJ_T0044541.1 MGP_C3HHeJ_G0022676.1 mouse_genomes_project 16 64507004 64511421 + Pou1f1 protein_coding retained_intron MGP_C3HHeJ_T0044542.1 MGP_C3HHeJ_G0022676.1 mouse_genomes_project 16 64507004 64521714 + MGP_C3HHeJ_P0044542 Pou1f1 protein_coding protein_coding MGP_C3HHeJ_T0044543.1 MGP_C3HHeJ_G0022676.1 mouse_genomes_project 16 64507040 64519997 + MGP_C3HHeJ_P0044543 Pou1f1 protein_coding protein_coding MGP_C3HHeJ_T0044544.1 MGP_C3HHeJ_G0022676.1 mouse_genomes_project 16 64509154 64519858 + MGP_C3HHeJ_P0044544 Pou1f1 protein_coding protein_coding MGP_C3HHeJ_T0044304.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44742970 44857645 - MGP_C3HHeJ_P0044304 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044305.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44750126 44765174 - MGP_C3HHeJ_P0044305 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044306.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44750173 44765230 - MGP_C3HHeJ_P0044306 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044307.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44750257 44803538 - MGP_C3HHeJ_P0044307 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044308.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44750711 44793124 - MGP_C3HHeJ_P0044308 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044309.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44791048 44857530 - MGP_C3HHeJ_P0044309 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044310.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44791460 44793697 - Nectin3 protein_coding retained_intron MGP_C3HHeJ_T0044311.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44802196 44857645 - MGP_C3HHeJ_P0044311 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044312.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44813095 44857450 - MGP_C3HHeJ_P0044312 Nectin3 protein_coding protein_coding MGP_C3HHeJ_T0044313.1 MGP_C3HHeJ_G0022592.1 mouse_genomes_project 16 44817657 44859215 - Nectin3 protein_coding processed_transcript MGP_C3HHeJ_T0043972.1 MGP_C3HHeJ_G0022512.1 mouse_genomes_project 16 34130967 34136524 + MGP_C3HHeJ_P0043972 protein_coding protein_coding MGP_C3HHeJ_T0042847.1 MGP_C3HHeJ_G0022252.1 mouse_genomes_project 16 7902237 7910936 + MGP_C3HHeJ_P0042847 Snn protein_coding protein_coding MGP_C3HHeJ_T0043319.1 MGP_C3HHeJ_G0022348.1 mouse_genomes_project 16 15828222 15830307 - MGP_C3HHeJ_P0043319 Gp1bb protein_coding protein_coding MGP_C3HHeJ_T0043320.1 MGP_C3HHeJ_G0022348.1 mouse_genomes_project 16 15828625 15829270 - MGP_C3HHeJ_P0043320 Gp1bb protein_coding protein_coding MGP_C3HHeJ_T0042991.1 MGP_C3HHeJ_G0022286.1 mouse_genomes_project 16 12852665 12867566 - MGP_C3HHeJ_P0042991 Mzt2 protein_coding protein_coding MGP_C3HHeJ_T0042992.1 MGP_C3HHeJ_G0022286.1 mouse_genomes_project 16 12852667 12866941 - Mzt2 protein_coding retained_intron MGP_C3HHeJ_T0042993.1 MGP_C3HHeJ_G0022286.1 mouse_genomes_project 16 12852674 12867588 - MGP_C3HHeJ_P0042993 Mzt2 protein_coding protein_coding MGP_C3HHeJ_T0012998.1 MGP_C3HHeJ_G0011102.1 mouse_genomes_project 16 16180889 16181297 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013019.1 MGP_C3HHeJ_G0011123.1 mouse_genomes_project 16 33523505 33523741 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043209.1 MGP_C3HHeJ_G0022324.1 mouse_genomes_project 16 14975420 15033614 - MGP_C3HHeJ_P0043209 Gm20518 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000920.1 MGP_C3HHeJ_G0000859.1 mouse_genomes_project 16 15066211 15067377 + TEC TEC MGP_C3HHeJ_T0045077.1 MGP_C3HHeJ_G0022824.1 mouse_genomes_project 16 97947347 97969163 - MGP_C3HHeJ_P0045077 Ripk4 protein_coding protein_coding MGP_C3HHeJ_T0045078.1 MGP_C3HHeJ_G0022824.1 mouse_genomes_project 16 97947347 97968917 - MGP_C3HHeJ_P0045078 Ripk4 protein_coding protein_coding MGP_C3HHeJ_T0043432.1 MGP_C3HHeJ_G0022378.1 mouse_genomes_project 16 17892827 17898145 - MGP_C3HHeJ_P0043432 Alg3 protein_coding protein_coding MGP_C3HHeJ_T0043433.1 MGP_C3HHeJ_G0022378.1 mouse_genomes_project 16 17892840 17897999 - MGP_C3HHeJ_P0043433 Alg3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043434.1 MGP_C3HHeJ_G0022378.1 mouse_genomes_project 16 17892840 17898115 - MGP_C3HHeJ_P0043434 Alg3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043435.1 MGP_C3HHeJ_G0022378.1 mouse_genomes_project 16 17892848 17898108 - MGP_C3HHeJ_P0043435 Alg3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043436.1 MGP_C3HHeJ_G0022378.1 mouse_genomes_project 16 17892849 17898124 - MGP_C3HHeJ_P0043436 Alg3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043437.1 MGP_C3HHeJ_G0022378.1 mouse_genomes_project 16 17896118 17898129 - Alg3 protein_coding processed_transcript MGP_C3HHeJ_T0006742.1 MGP_C3HHeJ_G0005554.1 mouse_genomes_project 16 8045544 8067851 + 2610020C07Rik lincRNA lincRNA MGP_C3HHeJ_T0044638.1 MGP_C3HHeJ_G0022707.1 mouse_genomes_project 16 87118987 87132818 + MGP_C3HHeJ_P0044638 N6amt1 protein_coding protein_coding MGP_C3HHeJ_T0044639.1 MGP_C3HHeJ_G0022707.1 mouse_genomes_project 16 87119002 87130919 + MGP_C3HHeJ_P0044639 N6amt1 protein_coding protein_coding MGP_C3HHeJ_T0044640.1 MGP_C3HHeJ_G0022707.1 mouse_genomes_project 16 87119004 87132932 + MGP_C3HHeJ_P0044640 N6amt1 protein_coding protein_coding MGP_C3HHeJ_T0045090.1 MGP_C3HHeJ_G0022826.1 mouse_genomes_project 16 98058686 98126229 - MGP_C3HHeJ_P0045090 C2cd2 protein_coding protein_coding MGP_C3HHeJ_T0010039.1 MGP_C3HHeJ_G0008172.1 mouse_genomes_project 16 16576956 16577066 + Gm23612 miRNA miRNA MGP_C3HHeJ_T0044934.1 MGP_C3HHeJ_G0022799.1 mouse_genomes_project 16 94170637 94335843 - MGP_C3HHeJ_P0044934 Hlcs protein_coding protein_coding MGP_C3HHeJ_T0011314.1 MGP_C3HHeJ_G0009447.1 mouse_genomes_project 16 39278528 39278679 - Gm27717 misc_RNA misc_RNA MGP_C3HHeJ_T0013032.1 MGP_C3HHeJ_G0011136.1 mouse_genomes_project 16 43153949 43154241 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006754.1 MGP_C3HHeJ_G0005563.1 mouse_genomes_project 16 19305168 19306024 - 2610020F03Rik lincRNA lincRNA MGP_C3HHeJ_T0099061.1 MGP_C3HHeJ_G0037255.1 mouse_genomes_project 16 62672665 62672763 - Gm22769 snRNA snRNA MGP_C3HHeJ_T0043893.1 MGP_C3HHeJ_G0022491.1 mouse_genomes_project 16 31723952 31849260 + MGP_C3HHeJ_P0043893 Itgb5 protein_coding protein_coding MGP_C3HHeJ_T0043894.1 MGP_C3HHeJ_G0022491.1 mouse_genomes_project 16 31723964 31849267 + MGP_C3HHeJ_P0043894 Itgb5 protein_coding protein_coding MGP_C3HHeJ_T0043895.1 MGP_C3HHeJ_G0022491.1 mouse_genomes_project 16 31779107 31810084 + Itgb5 protein_coding processed_transcript MGP_C3HHeJ_T0043896.1 MGP_C3HHeJ_G0022491.1 mouse_genomes_project 16 31786049 31799031 + Itgb5 protein_coding processed_transcript MGP_C3HHeJ_T0043897.1 MGP_C3HHeJ_G0022491.1 mouse_genomes_project 16 31822385 31844262 + Itgb5 protein_coding processed_transcript MGP_C3HHeJ_T0044279.1 MGP_C3HHeJ_G0022586.1 mouse_genomes_project 16 44011903 44049762 - MGP_C3HHeJ_P0044279 Tmprss7 protein_coding protein_coding MGP_C3HHeJ_T0044280.1 MGP_C3HHeJ_G0022586.1 mouse_genomes_project 16 44011905 44040919 - Tmprss7 protein_coding processed_transcript MGP_C3HHeJ_T0044281.1 MGP_C3HHeJ_G0022586.1 mouse_genomes_project 16 44011929 44044997 - Tmprss7 protein_coding processed_transcript MGP_C3HHeJ_T0044282.1 MGP_C3HHeJ_G0022586.1 mouse_genomes_project 16 44038951 44042038 - Tmprss7 protein_coding processed_transcript MGP_C3HHeJ_T0044283.1 MGP_C3HHeJ_G0022586.1 mouse_genomes_project 16 44039065 44042043 - Tmprss7 protein_coding retained_intron MGP_C3HHeJ_T0010081.1 MGP_C3HHeJ_G0008214.1 mouse_genomes_project 16 94210202 94210312 - Gm23062 miRNA miRNA MGP_C3HHeJ_T0017307.1 MGP_C3HHeJ_G0015093.1 mouse_genomes_project 16 91878414 91911587 + D430001F17Rik processed_transcript processed_transcript MGP_C3HHeJ_T0044157.1 MGP_C3HHeJ_G0022559.1 mouse_genomes_project 16 42050986 42121511 + MGP_C3HHeJ_P0044157 Drd3 protein_coding protein_coding MGP_C3HHeJ_T0043749.1 MGP_C3HHeJ_G0022459.1 mouse_genomes_project 16 29808963 29875751 - MGP_C3HHeJ_P0043749 Pak2 protein_coding protein_coding MGP_C3HHeJ_T0043750.1 MGP_C3HHeJ_G0022459.1 mouse_genomes_project 16 29826600 29838082 - Pak2 protein_coding retained_intron MGP_C3HHeJ_T0098059.1 MGP_C3HHeJ_G0036271.1 mouse_genomes_project 16 13029105 13029215 - n-R5s31 rRNA rRNA MGP_C3HHeJ_T0043128.1 MGP_C3HHeJ_G0022312.1 mouse_genomes_project 16 14614313 14632191 + MGP_C3HHeJ_P0043128 Aifm3 protein_coding protein_coding MGP_C3HHeJ_T0043129.1 MGP_C3HHeJ_G0022312.1 mouse_genomes_project 16 14614365 14632191 + MGP_C3HHeJ_P0043129 Aifm3 protein_coding protein_coding MGP_C3HHeJ_T0043130.1 MGP_C3HHeJ_G0022312.1 mouse_genomes_project 16 14614549 14630112 + Aifm3 protein_coding retained_intron MGP_C3HHeJ_T0043131.1 MGP_C3HHeJ_G0022312.1 mouse_genomes_project 16 14624381 14632187 + Aifm3 protein_coding retained_intron MGP_C3HHeJ_T0043132.1 MGP_C3HHeJ_G0022312.1 mouse_genomes_project 16 14626947 14628408 + Aifm3 protein_coding retained_intron MGP_C3HHeJ_T0043133.1 MGP_C3HHeJ_G0022312.1 mouse_genomes_project 16 14627597 14630630 + Aifm3 protein_coding retained_intron MGP_C3HHeJ_T0043642.1 MGP_C3HHeJ_G0022435.1 mouse_genomes_project 16 26887822 26908620 + MGP_C3HHeJ_P0043642 Hrasls protein_coding protein_coding MGP_C3HHeJ_T0043643.1 MGP_C3HHeJ_G0022435.1 mouse_genomes_project 16 26888235 26906471 + MGP_C3HHeJ_P0043643 Hrasls protein_coding protein_coding MGP_C3HHeJ_T0043644.1 MGP_C3HHeJ_G0022435.1 mouse_genomes_project 16 26888257 26906317 + Hrasls protein_coding processed_transcript MGP_C3HHeJ_T0043645.1 MGP_C3HHeJ_G0022435.1 mouse_genomes_project 16 26888297 26898431 + MGP_C3HHeJ_P0043645 Hrasls protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042712.1 MGP_C3HHeJ_G0022211.1 mouse_genomes_project 16 1487287 1511142 - MGP_C3HHeJ_P0042712 Anks3 protein_coding protein_coding MGP_C3HHeJ_T0043221.1 MGP_C3HHeJ_G0022329.1 mouse_genomes_project 16 15056404 15058357 - MGP_C3HHeJ_P0043221 Gsc2 protein_coding protein_coding MGP_C3HHeJ_T0042600.1 MGP_C3HHeJ_G0022188.1 mouse_genomes_project 16 393302 407579 - 1700037C18Rik protein_coding processed_transcript MGP_C3HHeJ_T0042601.1 MGP_C3HHeJ_G0022188.1 mouse_genomes_project 16 393304 406683 - MGP_C3HHeJ_P0042601 1700037C18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042603.1 MGP_C3HHeJ_G0022188.1 mouse_genomes_project 16 402426 407615 - MGP_C3HHeJ_P0042603 1700037C18Rik protein_coding protein_coding MGP_C3HHeJ_T0042604.1 MGP_C3HHeJ_G0022188.1 mouse_genomes_project 16 404723 406628 - MGP_C3HHeJ_P0042604 1700037C18Rik protein_coding protein_coding MGP_C3HHeJ_T0042605.1 MGP_C3HHeJ_G0022188.1 mouse_genomes_project 16 405183 406577 - MGP_C3HHeJ_P0042605 1700037C18Rik protein_coding protein_coding MGP_C3HHeJ_T0042606.1 MGP_C3HHeJ_G0022188.1 mouse_genomes_project 16 405938 407549 - MGP_C3HHeJ_P0042606 1700037C18Rik protein_coding protein_coding MGP_C3HHeJ_T0043246.1 MGP_C3HHeJ_G0022337.1 mouse_genomes_project 16 15404869 15420677 - MGP_C3HHeJ_P0043246 Zdhhc8 protein_coding protein_coding MGP_C3HHeJ_T0043640.1 MGP_C3HHeJ_G0022433.1 mouse_genomes_project 16 25821644 26096121 - MGP_C3HHeJ_P0043640 Fgf12 protein_coding protein_coding MGP_C3HHeJ_T0011320.1 MGP_C3HHeJ_G0009453.1 mouse_genomes_project 16 80760162 80760475 - Gm26023 misc_RNA misc_RNA MGP_C3HHeJ_T0011316.1 MGP_C3HHeJ_G0009449.1 mouse_genomes_project 16 45983220 45983534 - Gm25318 misc_RNA misc_RNA MGP_C3HHeJ_T0044826.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91616503 91623704 - MGP_C3HHeJ_P0044826 Donson protein_coding protein_coding MGP_C3HHeJ_T0044827.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618496 91627983 - MGP_C3HHeJ_P0044827 Donson protein_coding protein_coding MGP_C3HHeJ_T0044828.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618500 91628036 - Donson protein_coding retained_intron MGP_C3HHeJ_T0044829.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618500 91628036 - MGP_C3HHeJ_P0044829 Donson protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044830.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618500 91628036 - MGP_C3HHeJ_P0044830 Donson protein_coding protein_coding MGP_C3HHeJ_T0044831.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618757 91627146 - MGP_C3HHeJ_P0044831 Donson protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044832.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618757 91627146 - MGP_C3HHeJ_P0044832 Donson protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044833.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91618757 91627988 - MGP_C3HHeJ_P0044833 Donson protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044834.1 MGP_C3HHeJ_G0022778.1 mouse_genomes_project 16 91619063 91627974 - MGP_C3HHeJ_P0044834 Donson protein_coding protein_coding MGP_C3HHeJ_T0101772.1 MGP_C3HHeJ_G0039737.1 mouse_genomes_project 16 20493528 20498393 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017283.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76609902 76740893 + processed_transcript lincRNA MGP_C3HHeJ_T0017284.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76609902 76985463 + processed_transcript lincRNA MGP_C3HHeJ_T0017285.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76609904 76983994 + processed_transcript lincRNA MGP_C3HHeJ_T0017286.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76702828 77070351 + processed_transcript lincRNA MGP_C3HHeJ_T0017287.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76702836 76738043 + processed_transcript lincRNA MGP_C3HHeJ_T0017288.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76702853 76981963 + processed_transcript lincRNA MGP_C3HHeJ_T0017289.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76702907 76985484 + processed_transcript lincRNA MGP_C3HHeJ_T0017290.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76702976 76943865 + processed_transcript lincRNA MGP_C3HHeJ_T0017291.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76703152 77081347 + processed_transcript lincRNA MGP_C3HHeJ_T0017292.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76838969 76841450 + processed_transcript TEC MGP_C3HHeJ_T0017293.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76884742 76985534 + processed_transcript lincRNA MGP_C3HHeJ_T0017294.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76884906 77081351 + processed_transcript lincRNA MGP_C3HHeJ_T0017295.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76980866 76983114 + processed_transcript TEC MGP_C3HHeJ_T0017296.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 76981404 76982007 + processed_transcript lincRNA MGP_C3HHeJ_T0017297.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 77059950 77081345 + processed_transcript lincRNA MGP_C3HHeJ_T0017298.1 MGP_C3HHeJ_G0015086.1 mouse_genomes_project 16 77070062 77081345 + processed_transcript lincRNA MGP_C3HHeJ_T0043145.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14653483 14656638 - MGP_C3HHeJ_P0043145 Thap7 protein_coding protein_coding MGP_C3HHeJ_T0043146.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14653687 14656614 - Thap7 protein_coding retained_intron MGP_C3HHeJ_T0043147.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14653751 14656554 - Thap7 protein_coding retained_intron MGP_C3HHeJ_T0043148.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14653845 14656183 - Thap7 protein_coding retained_intron MGP_C3HHeJ_T0043149.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14654002 14654650 - Thap7 protein_coding retained_intron MGP_C3HHeJ_T0043150.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14654083 14656557 - MGP_C3HHeJ_P0043150 Thap7 protein_coding protein_coding MGP_C3HHeJ_T0043151.1 MGP_C3HHeJ_G0022314.1 mouse_genomes_project 16 14654504 14656158 - Thap7 protein_coding retained_intron MGP_C3HHeJ_T0043587.1 MGP_C3HHeJ_G0022412.1 mouse_genomes_project 16 20757051 20761755 - MGP_C3HHeJ_P0043587 BC106179 protein_coding protein_coding MGP_C3HHeJ_T0043965.1 MGP_C3HHeJ_G0022508.1 mouse_genomes_project 16 34008853 34010640 + MGP_C3HHeJ_P0043965 Wdr5b protein_coding protein_coding MGP_C3HHeJ_T0099046.1 MGP_C3HHeJ_G0037240.1 mouse_genomes_project 16 34443560 34443665 + Gm23306 snRNA snRNA MGP_C3HHeJ_T0043641.1 MGP_C3HHeJ_G0022434.1 mouse_genomes_project 16 26486095 26592248 - MGP_C3HHeJ_P0043641 Mb21d2 protein_coding protein_coding MGP_C3HHeJ_T0000039.1 MGP_C3HHeJ_G0000032.1 mouse_genomes_project 16 16446154 16446196 - MGP_C3HHeJ_P0000039 Iglj4 IG_J_gene IG_J_gene MGP_C3HHeJ_T0043081.1 MGP_C3HHeJ_G0022302.1 mouse_genomes_project 16 14225839 14234005 - MGP_C3HHeJ_P0043081 Ccdc116 protein_coding protein_coding MGP_C3HHeJ_T0043082.1 MGP_C3HHeJ_G0022302.1 mouse_genomes_project 16 14226008 14230858 - MGP_C3HHeJ_P0043082 Ccdc116 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043083.1 MGP_C3HHeJ_G0022302.1 mouse_genomes_project 16 14227811 14230985 - MGP_C3HHeJ_P0043083 Ccdc116 protein_coding protein_coding MGP_C3HHeJ_T0043084.1 MGP_C3HHeJ_G0022302.1 mouse_genomes_project 16 14227812 14231199 - MGP_C3HHeJ_P0043084 Ccdc116 protein_coding protein_coding MGP_C3HHeJ_T0043085.1 MGP_C3HHeJ_G0022302.1 mouse_genomes_project 16 14229496 14231214 - Ccdc116 protein_coding processed_transcript MGP_C3HHeJ_T0003618.1 MGP_C3HHeJ_G0003272.1 mouse_genomes_project 16 54560409 54561759 - Zbtb11os1 antisense antisense MGP_C3HHeJ_T0013003.1 MGP_C3HHeJ_G0011107.1 mouse_genomes_project 16 16989559 16990226 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044713.1 MGP_C3HHeJ_G0022750.1 mouse_genomes_project 16 89243229 89245764 - MGP_C3HHeJ_P0044713 Krtap6-2 protein_coding protein_coding MGP_C3HHeJ_T0044712.1 MGP_C3HHeJ_G0022749.1 mouse_genomes_project 16 89227535 89228283 - MGP_C3HHeJ_P0044712 Krtap21-1 protein_coding protein_coding MGP_C3HHeJ_T0099071.1 MGP_C3HHeJ_G0037265.1 mouse_genomes_project 16 94479600 94479760 + Gm23692 snRNA snRNA MGP_C3HHeJ_T0042902.1 MGP_C3HHeJ_G0022262.1 mouse_genomes_project 16 10008441 10049631 + MGP_C3HHeJ_P0042902 Ercc4 protein_coding protein_coding MGP_C3HHeJ_T0042903.1 MGP_C3HHeJ_G0022262.1 mouse_genomes_project 16 10008674 10023749 + Ercc4 protein_coding retained_intron MGP_C3HHeJ_T0042904.1 MGP_C3HHeJ_G0022262.1 mouse_genomes_project 16 10008692 10027530 + MGP_C3HHeJ_P0042904 Ercc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042905.1 MGP_C3HHeJ_G0022262.1 mouse_genomes_project 16 10010654 10051613 + MGP_C3HHeJ_P0042905 Ercc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042906.1 MGP_C3HHeJ_G0022262.1 mouse_genomes_project 16 10034048 10043947 + Ercc4 protein_coding processed_transcript MGP_C3HHeJ_T0017268.1 MGP_C3HHeJ_G0015076.1 mouse_genomes_project 16 17793010 17799810 - Gm16618 processed_transcript processed_transcript MGP_C3HHeJ_T0042693.1 MGP_C3HHeJ_G0022206.1 mouse_genomes_project 16 1286718 1305474 - MGP_C3HHeJ_P0042693 Cdip1 protein_coding protein_coding MGP_C3HHeJ_T0042696.1 MGP_C3HHeJ_G0022206.1 mouse_genomes_project 16 1300837 1326639 - MGP_C3HHeJ_P0042696 Cdip1 protein_coding protein_coding MGP_C3HHeJ_T0042697.1 MGP_C3HHeJ_G0022206.1 mouse_genomes_project 16 1302217 1306880 - Cdip1 protein_coding retained_intron MGP_C3HHeJ_T0042698.1 MGP_C3HHeJ_G0022206.1 mouse_genomes_project 16 1302217 1326941 - MGP_C3HHeJ_P0042698 Cdip1 protein_coding protein_coding MGP_C3HHeJ_T0042699.1 MGP_C3HHeJ_G0022206.1 mouse_genomes_project 16 1302715 1326579 - MGP_C3HHeJ_P0042699 Cdip1 protein_coding protein_coding MGP_C3HHeJ_T0042700.1 MGP_C3HHeJ_G0022206.1 mouse_genomes_project 16 1304685 1326915 - Cdip1 protein_coding retained_intron MGP_C3HHeJ_T0006788.1 MGP_C3HHeJ_G0005590.1 mouse_genomes_project 16 84359467 84372912 + Mir155hg lincRNA lincRNA MGP_C3HHeJ_T0006789.1 MGP_C3HHeJ_G0005590.1 mouse_genomes_project 16 84370689 84372912 + Mir155hg lincRNA lincRNA MGP_C3HHeJ_T0044984.1 MGP_C3HHeJ_G0022805.1 mouse_genomes_project 16 94807984 95072857 - MGP_C3HHeJ_P0044984 Kcnj6 protein_coding protein_coding MGP_C3HHeJ_T0044985.1 MGP_C3HHeJ_G0022805.1 mouse_genomes_project 16 94820759 95072857 - MGP_C3HHeJ_P0044985 Kcnj6 protein_coding protein_coding MGP_C3HHeJ_T0044986.1 MGP_C3HHeJ_G0022805.1 mouse_genomes_project 16 94886987 94921916 - MGP_C3HHeJ_P0044986 Kcnj6 protein_coding protein_coding MGP_C3HHeJ_T0044545.1 MGP_C3HHeJ_G0022677.1 mouse_genomes_project 16 64525837 64551011 - MGP_C3HHeJ_P0044545 Chmp2b protein_coding protein_coding MGP_C3HHeJ_T0044698.1 MGP_C3HHeJ_G0022737.1 mouse_genomes_project 16 88843670 88844240 + MGP_C3HHeJ_P0044698 Gm10229 protein_coding protein_coding MGP_C3HHeJ_T0044632.1 MGP_C3HHeJ_G0022704.1 mouse_genomes_project 16 85109525 85237059 - MGP_C3HHeJ_P0044632 Cyyr1 protein_coding protein_coding MGP_C3HHeJ_T0044633.1 MGP_C3HHeJ_G0022704.1 mouse_genomes_project 16 85140210 85237059 - MGP_C3HHeJ_P0044633 Cyyr1 protein_coding protein_coding MGP_C3HHeJ_T0043352.1 MGP_C3HHeJ_G0022357.1 mouse_genomes_project 16 16550205 16551300 - MGP_C3HHeJ_P0043352 Olfr164 protein_coding protein_coding MGP_C3HHeJ_T0044040.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35203914 35481638 - MGP_C3HHeJ_P0044040 Stxbp5l protein_coding protein_coding MGP_C3HHeJ_T0044041.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35204240 35481638 - MGP_C3HHeJ_P0044041 Stxbp5l protein_coding protein_coding MGP_C3HHeJ_T0044042.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35204628 35481673 - MGP_C3HHeJ_P0044042 Stxbp5l protein_coding protein_coding MGP_C3HHeJ_T0044043.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35204628 35481677 - MGP_C3HHeJ_P0044043 Stxbp5l protein_coding protein_coding MGP_C3HHeJ_T0044044.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35223735 35481638 - MGP_C3HHeJ_P0044044 Stxbp5l protein_coding protein_coding MGP_C3HHeJ_T0044045.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35248023 35293232 - Stxbp5l protein_coding processed_transcript MGP_C3HHeJ_T0044046.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35302210 35481638 - MGP_C3HHeJ_P0044046 Stxbp5l protein_coding protein_coding MGP_C3HHeJ_T0044047.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35414522 35481638 - Stxbp5l protein_coding retained_intron MGP_C3HHeJ_T0044048.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35470843 35481673 - Stxbp5l protein_coding processed_transcript MGP_C3HHeJ_T0044049.1 MGP_C3HHeJ_G0022529.1 mouse_genomes_project 16 35479585 35481638 - Stxbp5l protein_coding retained_intron MGP_C3HHeJ_T0044714.1 MGP_C3HHeJ_G0022751.1 mouse_genomes_project 16 89307920 89308499 - MGP_C3HHeJ_P0044714 Krtap8-1 protein_coding protein_coding MGP_C3HHeJ_T0006786.1 MGP_C3HHeJ_G0005589.1 mouse_genomes_project 16 76383428 76395456 - lincRNA lincRNA MGP_C3HHeJ_T0006787.1 MGP_C3HHeJ_G0005589.1 mouse_genomes_project 16 76391395 76395462 - lincRNA lincRNA MGP_C3HHeJ_T0044595.1 MGP_C3HHeJ_G0022692.1 mouse_genomes_project 16 77706794 77746162 + MGP_C3HHeJ_P0044595 Cxadr protein_coding protein_coding MGP_C3HHeJ_T0044596.1 MGP_C3HHeJ_G0022692.1 mouse_genomes_project 16 77707041 77759057 + MGP_C3HHeJ_P0044596 Cxadr protein_coding protein_coding MGP_C3HHeJ_T0043775.1 MGP_C3HHeJ_G0022465.1 mouse_genomes_project 16 30046926 30056426 + Wdr53 protein_coding processed_transcript MGP_C3HHeJ_T0043776.1 MGP_C3HHeJ_G0022465.1 mouse_genomes_project 16 30046926 30056747 + MGP_C3HHeJ_P0043776 Wdr53 protein_coding protein_coding MGP_C3HHeJ_T0043777.1 MGP_C3HHeJ_G0022465.1 mouse_genomes_project 16 30046952 30056756 + MGP_C3HHeJ_P0043777 Wdr53 protein_coding protein_coding MGP_C3HHeJ_T0043778.1 MGP_C3HHeJ_G0022465.1 mouse_genomes_project 16 30047100 30051819 + Wdr53 protein_coding retained_intron MGP_C3HHeJ_T0006765.1 MGP_C3HHeJ_G0005574.1 mouse_genomes_project 16 36583589 36585100 + D930030I03Rik lincRNA lincRNA MGP_C3HHeJ_T0044694.1 MGP_C3HHeJ_G0022733.1 mouse_genomes_project 16 88753224 88753392 - MGP_C3HHeJ_P0044694 Krtap19-9a protein_coding protein_coding MGP_C3HHeJ_T0100300.1 MGP_C3HHeJ_G0038494.1 mouse_genomes_project 16 36278270 36278402 + Gm25617 snoRNA snoRNA MGP_C3HHeJ_T0100321.1 MGP_C3HHeJ_G0038515.1 mouse_genomes_project 16 77832214 77832344 - Gm25038 snoRNA snoRNA MGP_C3HHeJ_T0044682.1 MGP_C3HHeJ_G0022723.1 mouse_genomes_project 16 88576269 88578199 - MGP_C3HHeJ_P0044682 protein_coding protein_coding MGP_C3HHeJ_T0010042.1 MGP_C3HHeJ_G0008175.1 mouse_genomes_project 16 18635359 18635413 - Mir7680 miRNA miRNA MGP_C3HHeJ_T0044496.1 MGP_C3HHeJ_G0022656.1 mouse_genomes_project 16 58055267 58060417 + MGP_C3HHeJ_P0044496 protein_coding protein_coding MGP_C3HHeJ_T0043826.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30646638 30695505 - MGP_C3HHeJ_P0043826 Rubcn protein_coding protein_coding MGP_C3HHeJ_T0043827.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30646642 30649856 - Rubcn protein_coding retained_intron MGP_C3HHeJ_T0043828.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30646642 30695478 - MGP_C3HHeJ_P0043828 Rubcn protein_coding protein_coding MGP_C3HHeJ_T0043829.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30646655 30695278 - MGP_C3HHeJ_P0043829 Rubcn protein_coding protein_coding MGP_C3HHeJ_T0043830.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30646663 30695490 - MGP_C3HHeJ_P0043830 Rubcn protein_coding protein_coding MGP_C3HHeJ_T0043831.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30648402 30663504 - Rubcn protein_coding retained_intron MGP_C3HHeJ_T0043832.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30652886 30654640 - Rubcn protein_coding retained_intron MGP_C3HHeJ_T0043833.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30660435 30661481 - Rubcn protein_coding retained_intron MGP_C3HHeJ_T0043834.1 MGP_C3HHeJ_G0022479.1 mouse_genomes_project 16 30688825 30695477 - Rubcn protein_coding processed_transcript MGP_C3HHeJ_T0043801.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30461743 30486055 + Tnk2 protein_coding processed_transcript MGP_C3HHeJ_T0043802.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30462160 30481656 + Tnk2 protein_coding processed_transcript MGP_C3HHeJ_T0043803.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30462512 30501205 + MGP_C3HHeJ_P0043803 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043804.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30462512 30501205 + MGP_C3HHeJ_P0043804 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043805.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30462542 30501205 + MGP_C3HHeJ_P0043805 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043806.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30462695 30501204 + MGP_C3HHeJ_P0043806 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043807.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30462828 30486068 + Tnk2 protein_coding processed_transcript MGP_C3HHeJ_T0043808.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30474810 30486047 + Tnk2 protein_coding processed_transcript MGP_C3HHeJ_T0043809.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30476684 30486039 + Tnk2 protein_coding processed_transcript MGP_C3HHeJ_T0043810.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30486015 30489435 + Tnk2 protein_coding processed_transcript MGP_C3HHeJ_T0043811.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30490954 30497094 + MGP_C3HHeJ_P0043811 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043812.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30490956 30501205 + MGP_C3HHeJ_P0043812 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043813.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30490978 30497308 + MGP_C3HHeJ_P0043813 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043814.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30490992 30497761 + MGP_C3HHeJ_P0043814 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0043815.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30490995 30496689 + Tnk2 protein_coding retained_intron MGP_C3HHeJ_T0043816.1 MGP_C3HHeJ_G0022475.1 mouse_genomes_project 16 30490999 30497510 + MGP_C3HHeJ_P0043816 Tnk2 protein_coding protein_coding MGP_C3HHeJ_T0042994.1 MGP_C3HHeJ_G0022287.1 mouse_genomes_project 16 12897887 13165614 - MGP_C3HHeJ_P0042994 Spidr protein_coding protein_coding MGP_C3HHeJ_T0043560.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20637960 20644077 + MGP_C3HHeJ_P0043560 Eif4a2 protein_coding protein_coding MGP_C3HHeJ_T0043561.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638274 20639817 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043562.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638274 20642975 + MGP_C3HHeJ_P0043562 Eif4a2 protein_coding protein_coding MGP_C3HHeJ_T0043563.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638274 20645054 + MGP_C3HHeJ_P0043563 Eif4a2 protein_coding protein_coding MGP_C3HHeJ_T0043564.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638275 20639610 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043565.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638275 20639721 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043566.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638275 20644077 + MGP_C3HHeJ_P0043566 Eif4a2 protein_coding protein_coding MGP_C3HHeJ_T0043567.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638283 20641677 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043568.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638287 20641226 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043569.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638289 20640835 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043570.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638293 20639690 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043571.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638295 20640764 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043572.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20638433 20641167 + Eif4a2 protein_coding processed_transcript MGP_C3HHeJ_T0043573.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20639098 20639987 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043574.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20639747 20641083 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043575.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20640492 20642927 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043576.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20640561 20641314 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043577.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20640749 20642144 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043578.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20641188 20642458 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0043579.1 MGP_C3HHeJ_G0022409.1 mouse_genomes_project 16 20641215 20642851 + Eif4a2 protein_coding retained_intron MGP_C3HHeJ_T0044573.1 MGP_C3HHeJ_G0022684.1 mouse_genomes_project 16 74894534 74939474 - MGP_C3HHeJ_P0044573 Lipi protein_coding protein_coding MGP_C3HHeJ_T0044574.1 MGP_C3HHeJ_G0022684.1 mouse_genomes_project 16 74894564 74920250 - Lipi protein_coding processed_transcript MGP_C3HHeJ_T0013022.1 MGP_C3HHeJ_G0011126.1 mouse_genomes_project 16 35300450 35301297 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100316.1 MGP_C3HHeJ_G0038510.1 mouse_genomes_project 16 70908693 70908824 + Gm22797 snoRNA snoRNA MGP_C3HHeJ_T0044207.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42719281 42728854 + Cfap44 protein_coding retained_intron MGP_C3HHeJ_T0044208.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42719284 42808278 + MGP_C3HHeJ_P0044208 Cfap44 protein_coding protein_coding MGP_C3HHeJ_T0044209.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42719307 42725915 + Cfap44 protein_coding retained_intron MGP_C3HHeJ_T0044210.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42725341 42807944 + MGP_C3HHeJ_P0044210 Cfap44 protein_coding protein_coding MGP_C3HHeJ_T0044211.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42732540 42755932 + Cfap44 protein_coding retained_intron MGP_C3HHeJ_T0044212.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42757915 42763078 + Cfap44 protein_coding processed_transcript MGP_C3HHeJ_T0044213.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42782260 42807944 + MGP_C3HHeJ_P0044213 Cfap44 protein_coding protein_coding MGP_C3HHeJ_T0044214.1 MGP_C3HHeJ_G0022569.1 mouse_genomes_project 16 42797341 42808278 + Cfap44 protein_coding retained_intron MGP_C3HHeJ_T0043780.1 MGP_C3HHeJ_G0022467.1 mouse_genomes_project 16 30082525 30100281 + MGP_C3HHeJ_P0043780 Rnf168 protein_coding protein_coding MGP_C3HHeJ_T0043781.1 MGP_C3HHeJ_G0022467.1 mouse_genomes_project 16 30082527 30108838 + MGP_C3HHeJ_P0043781 Rnf168 protein_coding protein_coding MGP_C3HHeJ_T0043782.1 MGP_C3HHeJ_G0022467.1 mouse_genomes_project 16 30082527 30109366 + MGP_C3HHeJ_P0043782 Rnf168 protein_coding protein_coding MGP_C3HHeJ_T0043783.1 MGP_C3HHeJ_G0022467.1 mouse_genomes_project 16 30083238 30107258 + MGP_C3HHeJ_P0043783 Rnf168 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044475.1 MGP_C3HHeJ_G0022643.1 mouse_genomes_project 16 57585136 57586158 - MGP_C3HHeJ_P0044475 protein_coding protein_coding MGP_C3HHeJ_T0044476.1 MGP_C3HHeJ_G0022643.1 mouse_genomes_project 16 57585136 57587969 - MGP_C3HHeJ_P0044476 protein_coding protein_coding MGP_C3HHeJ_T0044614.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84492817 84499196 - MGP_C3HHeJ_P0044614 Atp5j protein_coding protein_coding MGP_C3HHeJ_T0044615.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84492822 84493765 - Atp5j protein_coding retained_intron MGP_C3HHeJ_T0044616.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84492822 84500460 - MGP_C3HHeJ_P0044616 Atp5j protein_coding protein_coding MGP_C3HHeJ_T0044617.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84492822 84500582 - MGP_C3HHeJ_P0044617 Atp5j protein_coding protein_coding MGP_C3HHeJ_T0044618.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84492825 84496564 - Atp5j protein_coding retained_intron MGP_C3HHeJ_T0044619.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84493390 84500559 - MGP_C3HHeJ_P0044619 Atp5j protein_coding protein_coding MGP_C3HHeJ_T0044620.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84494504 84498833 - Atp5j protein_coding processed_transcript MGP_C3HHeJ_T0044621.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84496027 84500255 - Atp5j protein_coding retained_intron MGP_C3HHeJ_T0044622.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84496285 84500112 - Atp5j protein_coding processed_transcript MGP_C3HHeJ_T0044623.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84496325 84499962 - Atp5j protein_coding processed_transcript MGP_C3HHeJ_T0044624.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84498479 84499789 - Atp5j protein_coding retained_intron MGP_C3HHeJ_T0044625.1 MGP_C3HHeJ_G0022701.1 mouse_genomes_project 16 84499232 84500486 - Atp5j protein_coding retained_intron MGP_C3HHeJ_T0043503.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806726 19031863 + MGP_C3HHeJ_P0043503 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043504.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806726 19031863 + MGP_C3HHeJ_P0043504 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043505.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806726 18965898 + MGP_C3HHeJ_P0043505 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043506.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806777 19031863 + MGP_C3HHeJ_P0043506 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043507.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806804 18931779 + MGP_C3HHeJ_P0043507 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043508.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806809 19031855 + MGP_C3HHeJ_P0043508 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043509.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18806880 18818582 + MGP_C3HHeJ_P0043509 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043510.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18854302 19028755 + MGP_C3HHeJ_P0043510 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043511.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18894022 19031858 + MGP_C3HHeJ_P0043511 Vps8 protein_coding protein_coding MGP_C3HHeJ_T0043512.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18912853 18918553 + Vps8 protein_coding retained_intron MGP_C3HHeJ_T0043513.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18912923 18945508 + MGP_C3HHeJ_P0043513 Vps8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043514.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 18955014 18968877 + Vps8 protein_coding retained_intron MGP_C3HHeJ_T0043515.1 MGP_C3HHeJ_G0022390.1 mouse_genomes_project 16 19012994 19031599 + Vps8 protein_coding processed_transcript MGP_C3HHeJ_T0013015.1 MGP_C3HHeJ_G0011119.1 mouse_genomes_project 16 29761171 29761616 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043358.1 MGP_C3HHeJ_G0022362.1 mouse_genomes_project 16 16786066 16788197 - MGP_C3HHeJ_P0043358 protein_coding protein_coding MGP_C3HHeJ_T0044784.1 MGP_C3HHeJ_G0022769.1 mouse_genomes_project 16 91279190 91302202 + MGP_C3HHeJ_P0044784 Ifnar2 protein_coding protein_coding MGP_C3HHeJ_T0044785.1 MGP_C3HHeJ_G0022769.1 mouse_genomes_project 16 91279199 91302379 + MGP_C3HHeJ_P0044785 Ifnar2 protein_coding protein_coding MGP_C3HHeJ_T0044786.1 MGP_C3HHeJ_G0022769.1 mouse_genomes_project 16 91279304 91314862 + MGP_C3HHeJ_P0044786 Ifnar2 protein_coding protein_coding MGP_C3HHeJ_T0044787.1 MGP_C3HHeJ_G0022769.1 mouse_genomes_project 16 91296127 91300115 + MGP_C3HHeJ_P0044787 Ifnar2 protein_coding protein_coding MGP_C3HHeJ_T0044095.1 MGP_C3HHeJ_G0022547.1 mouse_genomes_project 16 36635748 36662121 - MGP_C3HHeJ_P0044095 Timmdc1 protein_coding protein_coding MGP_C3HHeJ_T0044096.1 MGP_C3HHeJ_G0022547.1 mouse_genomes_project 16 36656121 36662099 - Timmdc1 protein_coding processed_transcript MGP_C3HHeJ_T0098062.1 MGP_C3HHeJ_G0036274.1 mouse_genomes_project 16 35964072 35964188 + n-R5s34 rRNA rRNA MGP_C3HHeJ_T0010024.1 MGP_C3HHeJ_G0008157.1 mouse_genomes_project 16 7010861 7010933 + Gm22932 miRNA miRNA MGP_C3HHeJ_T0044593.1 MGP_C3HHeJ_G0022690.1 mouse_genomes_project 16 76974392 76989747 - MGP_C3HHeJ_P0044593 Gm11146 protein_coding protein_coding MGP_C3HHeJ_T0043354.1 MGP_C3HHeJ_G0022359.1 mouse_genomes_project 16 16653902 16654844 - MGP_C3HHeJ_P0043354 Olfr165 protein_coding protein_coding MGP_C3HHeJ_T0042836.1 MGP_C3HHeJ_G0022246.1 mouse_genomes_project 16 7605651 7606058 - MGP_C3HHeJ_P0042836 Prm3 protein_coding protein_coding MGP_C3HHeJ_T0099053.1 MGP_C3HHeJ_G0037247.1 mouse_genomes_project 16 41403821 41403928 + Gm25873 snRNA snRNA MGP_C3HHeJ_T0042957.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11140821 11170618 + MGP_C3HHeJ_P0042957 Nde1 protein_coding protein_coding MGP_C3HHeJ_T0042958.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11140833 11170518 + MGP_C3HHeJ_P0042958 Nde1 protein_coding protein_coding MGP_C3HHeJ_T0042959.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11140844 11170608 + MGP_C3HHeJ_P0042959 Nde1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042960.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11140850 11148531 + Nde1 protein_coding retained_intron MGP_C3HHeJ_T0042961.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11140891 11170608 + MGP_C3HHeJ_P0042961 Nde1 protein_coding protein_coding MGP_C3HHeJ_T0042962.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11140895 11168131 + Nde1 protein_coding processed_transcript MGP_C3HHeJ_T0042963.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11152768 11166077 + Nde1 protein_coding retained_intron MGP_C3HHeJ_T0042964.1 MGP_C3HHeJ_G0022275.1 mouse_genomes_project 16 11161256 11168211 + MGP_C3HHeJ_P0042964 Nde1 protein_coding protein_coding MGP_C3HHeJ_T0006785.1 MGP_C3HHeJ_G0005588.1 mouse_genomes_project 16 75356929 75365894 + Gm15555 lincRNA lincRNA MGP_C3HHeJ_T0010061.1 MGP_C3HHeJ_G0008194.1 mouse_genomes_project 16 52386496 52386561 + Gm25041 miRNA miRNA MGP_C3HHeJ_T0043630.1 MGP_C3HHeJ_G0022428.1 mouse_genomes_project 16 24593103 24629208 - MGP_C3HHeJ_P0043630 Gmnc protein_coding protein_coding MGP_C3HHeJ_T0043631.1 MGP_C3HHeJ_G0022428.1 mouse_genomes_project 16 24596741 24605690 - MGP_C3HHeJ_P0043631 Gmnc protein_coding unknown_likely_coding MGP_C3HHeJ_T0013046.1 MGP_C3HHeJ_G0011150.1 mouse_genomes_project 16 60326098 60326609 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043318.1 MGP_C3HHeJ_G0022347.1 mouse_genomes_project 16 15786248 15791505 - MGP_C3HHeJ_P0043318 Tbx1 protein_coding protein_coding MGP_C3HHeJ_T0044665.1 MGP_C3HHeJ_G0022712.1 mouse_genomes_project 16 87331757 87376318 + MGP_C3HHeJ_P0044665 Map3k7cl protein_coding protein_coding MGP_C3HHeJ_T0042818.1 MGP_C3HHeJ_G0022241.1 mouse_genomes_project 16 7282513 7328742 + MGP_C3HHeJ_P0042818 Ciita protein_coding unknown_likely_coding MGP_C3HHeJ_T0042819.1 MGP_C3HHeJ_G0022241.1 mouse_genomes_project 16 7290229 7331053 + MGP_C3HHeJ_P0042819 Ciita protein_coding protein_coding MGP_C3HHeJ_T0044739.1 MGP_C3HHeJ_G0022759.1 mouse_genomes_project 16 90621530 90634169 + Mrap protein_coding processed_transcript MGP_C3HHeJ_T0044740.1 MGP_C3HHeJ_G0022759.1 mouse_genomes_project 16 90621530 90637415 + Mrap protein_coding processed_transcript MGP_C3HHeJ_T0044741.1 MGP_C3HHeJ_G0022759.1 mouse_genomes_project 16 90621530 90636926 + Mrap protein_coding processed_transcript MGP_C3HHeJ_T0044742.1 MGP_C3HHeJ_G0022759.1 mouse_genomes_project 16 90621530 90637415 + MGP_C3HHeJ_P0044742 Mrap protein_coding protein_coding MGP_C3HHeJ_T0044679.1 MGP_C3HHeJ_G0022720.1 mouse_genomes_project 16 88493552 88494198 - MGP_C3HHeJ_P0044679 Krtap27-1 protein_coding protein_coding MGP_C3HHeJ_T0000919.1 MGP_C3HHeJ_G0000858.1 mouse_genomes_project 16 680361 684823 - TEC TEC MGP_C3HHeJ_T0043367.1 MGP_C3HHeJ_G0022365.1 mouse_genomes_project 16 17145347 17152719 - MGP_C3HHeJ_P0043367 A930003A15Rik protein_coding protein_coding MGP_C3HHeJ_T0043020.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13799078 13889122 - MGP_C3HHeJ_P0043020 Spag6l protein_coding protein_coding MGP_C3HHeJ_T0043021.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13812294 13889129 - Spag6l protein_coding retained_intron MGP_C3HHeJ_T0043022.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13843139 13889090 - Spag6l protein_coding processed_transcript MGP_C3HHeJ_T0043023.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13843173 13889153 - Spag6l protein_coding processed_transcript MGP_C3HHeJ_T0043024.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13880267 13889265 - Spag6l protein_coding processed_transcript MGP_C3HHeJ_T0043025.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13880539 13889122 - Spag6l protein_coding processed_transcript MGP_C3HHeJ_T0043026.1 MGP_C3HHeJ_G0022293.1 mouse_genomes_project 16 13884821 13889116 - Spag6l protein_coding processed_transcript MGP_C3HHeJ_T0043599.1 MGP_C3HHeJ_G0022418.1 mouse_genomes_project 16 21504456 21509673 - MGP_C3HHeJ_P0043599 Rtp2 protein_coding protein_coding MGP_C3HHeJ_T0042571.1 MGP_C3HHeJ_G0022181.1 mouse_genomes_project 16 199777 210687 - MGP_C3HHeJ_P0042571 Mefv protein_coding protein_coding MGP_C3HHeJ_T0042572.1 MGP_C3HHeJ_G0022181.1 mouse_genomes_project 16 199777 210687 - MGP_C3HHeJ_P0042572 Mefv protein_coding protein_coding MGP_C3HHeJ_T0013058.1 MGP_C3HHeJ_G0011162.1 mouse_genomes_project 16 91442598 91444098 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043719.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29452111 29659772 + MGP_C3HHeJ_P0043719 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043720.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29452579 29658268 + MGP_C3HHeJ_P0043720 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043721.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29452605 29659778 + MGP_C3HHeJ_P0043721 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043722.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29452625 29659771 + MGP_C3HHeJ_P0043722 Dlg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043723.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29452709 29659768 + MGP_C3HHeJ_P0043723 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043724.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29452820 29659106 + MGP_C3HHeJ_P0043724 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043725.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29472861 29563503 + Dlg1 protein_coding retained_intron MGP_C3HHeJ_T0043726.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29484563 29661558 + MGP_C3HHeJ_P0043726 Dlg1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043727.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29542909 29658683 + MGP_C3HHeJ_P0043727 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043728.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29581999 29629001 + MGP_C3HHeJ_P0043728 Dlg1 protein_coding protein_coding MGP_C3HHeJ_T0043729.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29615464 29622668 + Dlg1 protein_coding retained_intron MGP_C3HHeJ_T0043730.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29622446 29644140 + MGP_C3HHeJ_P0043730 Dlg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043731.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29624335 29638213 + Dlg1 protein_coding processed_transcript MGP_C3HHeJ_T0043732.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29633504 29644095 + Dlg1 protein_coding retained_intron MGP_C3HHeJ_T0043733.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29639820 29649636 + Dlg1 protein_coding retained_intron MGP_C3HHeJ_T0043734.1 MGP_C3HHeJ_G0022453.1 mouse_genomes_project 16 29653901 29658270 + Dlg1 protein_coding retained_intron MGP_C3HHeJ_T0099064.1 MGP_C3HHeJ_G0037258.1 mouse_genomes_project 16 78021751 78021858 + Gm24861 snRNA snRNA MGP_C3HHeJ_T0043623.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24218613 24359523 + MGP_C3HHeJ_P0043623 Il1rap protein_coding protein_coding MGP_C3HHeJ_T0043624.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24218651 24358612 + MGP_C3HHeJ_P0043624 Il1rap protein_coding protein_coding MGP_C3HHeJ_T0043625.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24218662 24335397 + MGP_C3HHeJ_P0043625 Il1rap protein_coding protein_coding MGP_C3HHeJ_T0043626.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24218666 24352003 + MGP_C3HHeJ_P0043626 Il1rap protein_coding protein_coding MGP_C3HHeJ_T0043627.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24261309 24349327 + MGP_C3HHeJ_P0043627 Il1rap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043628.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24356692 24364376 + MGP_C3HHeJ_P0043628 Il1rap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043629.1 MGP_C3HHeJ_G0022427.1 mouse_genomes_project 16 24361300 24362487 + Il1rap protein_coding processed_transcript MGP_C3HHeJ_T0101147.1 MGP_C3HHeJ_G0039308.1 mouse_genomes_project 16 47789860 47790235 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101148.1 MGP_C3HHeJ_G0039308.1 mouse_genomes_project 16 47789989 47790998 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0043941.1 MGP_C3HHeJ_G0022502.1 mouse_genomes_project 16 33645945 33723435 - MGP_C3HHeJ_P0043941 Dirc2 protein_coding protein_coding MGP_C3HHeJ_T0043942.1 MGP_C3HHeJ_G0022502.1 mouse_genomes_project 16 33649444 33723409 - MGP_C3HHeJ_P0043942 Dirc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099048.1 MGP_C3HHeJ_G0037242.1 mouse_genomes_project 16 34478696 34478800 + Gm22263 snRNA snRNA MGP_C3HHeJ_T0044835.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91623666 91874160 - MGP_C3HHeJ_P0044835 Atp5o protein_coding protein_coding MGP_C3HHeJ_T0044873.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91872391 91878864 - MGP_C3HHeJ_P0044873 Atp5o protein_coding protein_coding MGP_C3HHeJ_T0044874.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91872396 91873862 - Atp5o protein_coding retained_intron MGP_C3HHeJ_T0044875.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91872398 91878724 - MGP_C3HHeJ_P0044875 Atp5o protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044876.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91872490 91878452 - Atp5o protein_coding processed_transcript MGP_C3HHeJ_T0044877.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91874036 91878596 - Atp5o protein_coding processed_transcript MGP_C3HHeJ_T0044878.1 MGP_C3HHeJ_G0022779.1 mouse_genomes_project 16 91875338 91878729 - Atp5o protein_coding retained_intron MGP_C3HHeJ_T0043699.1 MGP_C3HHeJ_G0022447.1 mouse_genomes_project 16 28335416 28338491 + MGP_C3HHeJ_P0043699 Fam43a protein_coding protein_coding MGP_C3HHeJ_T0044790.1 MGP_C3HHeJ_G0022771.1 mouse_genomes_project 16 91316611 91336226 + MGP_C3HHeJ_P0044790 Il10rb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044791.1 MGP_C3HHeJ_G0022771.1 mouse_genomes_project 16 91316682 91336238 + MGP_C3HHeJ_P0044791 Il10rb protein_coding protein_coding MGP_C3HHeJ_T0044792.1 MGP_C3HHeJ_G0022771.1 mouse_genomes_project 16 91316767 91330720 + Il10rb protein_coding retained_intron MGP_C3HHeJ_T0044793.1 MGP_C3HHeJ_G0022771.1 mouse_genomes_project 16 91316767 91335329 + MGP_C3HHeJ_P0044793 Il10rb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044794.1 MGP_C3HHeJ_G0022771.1 mouse_genomes_project 16 91316891 91325085 + Il10rb protein_coding processed_transcript MGP_C3HHeJ_T0044435.1 MGP_C3HHeJ_G0022630.1 mouse_genomes_project 16 56254670 56393783 - MGP_C3HHeJ_P0044435 Col8a1 protein_coding protein_coding MGP_C3HHeJ_T0043556.1 MGP_C3HHeJ_G0022406.1 mouse_genomes_project 16 20414171 20424870 + MGP_C3HHeJ_P0043556 Hrg protein_coding protein_coding MGP_C3HHeJ_T0043478.1 MGP_C3HHeJ_G0022383.1 mouse_genomes_project 16 17990778 17996780 + MGP_C3HHeJ_P0043478 Fam131a protein_coding protein_coding MGP_C3HHeJ_T0043479.1 MGP_C3HHeJ_G0022383.1 mouse_genomes_project 16 17990799 17999381 + MGP_C3HHeJ_P0043479 Fam131a protein_coding protein_coding MGP_C3HHeJ_T0043480.1 MGP_C3HHeJ_G0022383.1 mouse_genomes_project 16 17992404 18000545 + MGP_C3HHeJ_P0043480 Fam131a protein_coding protein_coding MGP_C3HHeJ_T0043481.1 MGP_C3HHeJ_G0022383.1 mouse_genomes_project 16 17993671 17999156 + MGP_C3HHeJ_P0043481 Fam131a protein_coding protein_coding MGP_C3HHeJ_T0042656.1 MGP_C3HHeJ_G0022198.1 mouse_genomes_project 16 1068092 1084695 - MGP_C3HHeJ_P0042656 Tfap4 protein_coding protein_coding MGP_C3HHeJ_T0099069.1 MGP_C3HHeJ_G0037263.1 mouse_genomes_project 16 91252762 91252845 - Gm24695 snRNA snRNA MGP_C3HHeJ_T0042911.1 MGP_C3HHeJ_G0022264.1 mouse_genomes_project 16 10455845 10596746 - MGP_C3HHeJ_P0042911 Parn protein_coding protein_coding MGP_C3HHeJ_T0043741.1 MGP_C3HHeJ_G0022457.1 mouse_genomes_project 16 29738254 29747989 + MGP_C3HHeJ_P0043741 Ncbp2 protein_coding protein_coding MGP_C3HHeJ_T0043742.1 MGP_C3HHeJ_G0022457.1 mouse_genomes_project 16 29738342 29746651 + Ncbp2 protein_coding retained_intron MGP_C3HHeJ_T0043743.1 MGP_C3HHeJ_G0022457.1 mouse_genomes_project 16 29738347 29752419 + Ncbp2 protein_coding processed_transcript MGP_C3HHeJ_T0043744.1 MGP_C3HHeJ_G0022457.1 mouse_genomes_project 16 29738354 29746679 + MGP_C3HHeJ_P0043744 Ncbp2 protein_coding protein_coding MGP_C3HHeJ_T0044426.1 MGP_C3HHeJ_G0022626.1 mouse_genomes_project 16 55799427 55860027 - MGP_C3HHeJ_P0044426 Tbc1d23 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044427.1 MGP_C3HHeJ_G0022626.1 mouse_genomes_project 16 55799432 55860127 - MGP_C3HHeJ_P0044427 Tbc1d23 protein_coding protein_coding MGP_C3HHeJ_T0010074.1 MGP_C3HHeJ_G0008207.1 mouse_genomes_project 16 77437242 77437353 + Gm25025 miRNA miRNA MGP_C3HHeJ_T0098375.1 MGP_C3HHeJ_G0036582.1 mouse_genomes_project 16 2567846 2590508 + 1700123O21Rik sense_intronic sense_intronic MGP_C3HHeJ_T0043764.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29948031 29966180 - MGP_C3HHeJ_P0043764 Nrros protein_coding protein_coding MGP_C3HHeJ_T0043765.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29948041 29966152 - MGP_C3HHeJ_P0043765 Nrros protein_coding protein_coding MGP_C3HHeJ_T0043766.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29948041 29953127 - MGP_C3HHeJ_P0043766 Nrros protein_coding protein_coding MGP_C3HHeJ_T0043767.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29948071 29966071 - MGP_C3HHeJ_P0043767 Nrros protein_coding protein_coding MGP_C3HHeJ_T0043768.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29948071 29966089 - MGP_C3HHeJ_P0043768 Nrros protein_coding protein_coding MGP_C3HHeJ_T0043769.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29949928 29966189 - MGP_C3HHeJ_P0043769 Nrros protein_coding protein_coding MGP_C3HHeJ_T0043770.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29950061 29966071 - Nrros protein_coding processed_transcript MGP_C3HHeJ_T0043771.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29950073 29953320 - Nrros protein_coding processed_transcript MGP_C3HHeJ_T0043772.1 MGP_C3HHeJ_G0022462.1 mouse_genomes_project 16 29950120 29966077 - MGP_C3HHeJ_P0043772 Nrros protein_coding protein_coding MGP_C3HHeJ_T0010025.1 MGP_C3HHeJ_G0008158.1 mouse_genomes_project 16 8099057 8099135 - Mir1945 miRNA miRNA MGP_C3HHeJ_T0043250.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434219 15439043 + Trmt2a protein_coding retained_intron MGP_C3HHeJ_T0043251.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434423 15439043 + MGP_C3HHeJ_P0043251 Trmt2a protein_coding protein_coding MGP_C3HHeJ_T0043252.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434423 15440313 + MGP_C3HHeJ_P0043252 Trmt2a protein_coding protein_coding MGP_C3HHeJ_T0043253.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434542 15439043 + Trmt2a protein_coding retained_intron MGP_C3HHeJ_T0043254.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434549 15439049 + Trmt2a protein_coding retained_intron MGP_C3HHeJ_T0043255.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434549 15439039 + Trmt2a protein_coding retained_intron MGP_C3HHeJ_T0043256.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15434602 15439043 + MGP_C3HHeJ_P0043256 Trmt2a protein_coding protein_coding MGP_C3HHeJ_T0043257.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15435561 15438653 + MGP_C3HHeJ_P0043257 Trmt2a protein_coding protein_coding MGP_C3HHeJ_T0043258.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15436962 15439042 + MGP_C3HHeJ_P0043258 Trmt2a protein_coding protein_coding MGP_C3HHeJ_T0043259.1 MGP_C3HHeJ_G0022339.1 mouse_genomes_project 16 15437761 15438772 + Trmt2a protein_coding retained_intron MGP_C3HHeJ_T0000946.1 MGP_C3HHeJ_G0000884.1 mouse_genomes_project 16 95865991 95867934 + TEC TEC MGP_C3HHeJ_T0044355.1 MGP_C3HHeJ_G0022607.1 mouse_genomes_project 16 50462694 50649599 + MGP_C3HHeJ_P0044355 Cblb protein_coding protein_coding MGP_C3HHeJ_T0044232.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274396 43301156 + MGP_C3HHeJ_P0044232 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044233.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274396 43302549 + MGP_C3HHeJ_P0044233 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044234.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274396 43301842 + MGP_C3HHeJ_P0044234 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044235.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274396 43301842 + MGP_C3HHeJ_P0044235 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044236.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274396 43301156 + MGP_C3HHeJ_P0044236 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044237.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274410 43321615 + MGP_C3HHeJ_P0044237 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044238.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274424 43321587 + MGP_C3HHeJ_P0044238 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044239.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274460 43302764 + MGP_C3HHeJ_P0044239 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044240.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43274467 43297341 + MGP_C3HHeJ_P0044240 Cd200r3 protein_coding protein_coding MGP_C3HHeJ_T0044241.1 MGP_C3HHeJ_G0022576.1 mouse_genomes_project 16 43301727 43303328 + Cd200r3 protein_coding retained_intron MGP_C3HHeJ_T0006740.1 MGP_C3HHeJ_G0005552.1 mouse_genomes_project 16 7840669 7848080 + Gm4262 lincRNA lincRNA MGP_C3HHeJ_T0042986.1 MGP_C3HHeJ_G0022283.1 mouse_genomes_project 16 12540401 12583430 - MGP_C3HHeJ_P0042986 Ube2v2 protein_coding protein_coding MGP_C3HHeJ_T0042987.1 MGP_C3HHeJ_G0022283.1 mouse_genomes_project 16 12544193 12583396 - MGP_C3HHeJ_P0042987 Ube2v2 protein_coding protein_coding MGP_C3HHeJ_T0012986.1 MGP_C3HHeJ_G0011090.1 mouse_genomes_project 16 9649386 9650721 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043416.1 MGP_C3HHeJ_G0022376.1 mouse_genomes_project 16 17837778 17851475 + MGP_C3HHeJ_P0043416 Abcf3 protein_coding protein_coding MGP_C3HHeJ_T0043417.1 MGP_C3HHeJ_G0022376.1 mouse_genomes_project 16 17838869 17840864 + Abcf3 protein_coding retained_intron MGP_C3HHeJ_T0043418.1 MGP_C3HHeJ_G0022376.1 mouse_genomes_project 16 17839778 17848874 + Abcf3 protein_coding retained_intron MGP_C3HHeJ_T0043419.1 MGP_C3HHeJ_G0022376.1 mouse_genomes_project 16 17849344 17850366 + Abcf3 protein_coding retained_intron MGP_C3HHeJ_T0043420.1 MGP_C3HHeJ_G0022376.1 mouse_genomes_project 16 17849657 17850914 + Abcf3 protein_coding retained_intron MGP_C3HHeJ_T0044176.1 MGP_C3HHeJ_G0022563.1 mouse_genomes_project 16 42281028 42315686 - MGP_C3HHeJ_P0044176 Gramd1c protein_coding protein_coding MGP_C3HHeJ_T0044177.1 MGP_C3HHeJ_G0022563.1 mouse_genomes_project 16 42281033 42330905 - MGP_C3HHeJ_P0044177 Gramd1c protein_coding protein_coding MGP_C3HHeJ_T0044178.1 MGP_C3HHeJ_G0022563.1 mouse_genomes_project 16 42281033 42319083 - MGP_C3HHeJ_P0044178 Gramd1c protein_coding protein_coding MGP_C3HHeJ_T0044179.1 MGP_C3HHeJ_G0022563.1 mouse_genomes_project 16 42288679 42333316 - MGP_C3HHeJ_P0044179 Gramd1c protein_coding unknown_likely_coding MGP_C3HHeJ_T0044516.1 MGP_C3HHeJ_G0022665.1 mouse_genomes_project 16 58411350 59427949 - MGP_C3HHeJ_P0044516 Epha6 protein_coding protein_coding MGP_C3HHeJ_T0044517.1 MGP_C3HHeJ_G0022665.1 mouse_genomes_project 16 58425041 58830782 - MGP_C3HHeJ_P0044517 Epha6 protein_coding protein_coding MGP_C3HHeJ_T0044518.1 MGP_C3HHeJ_G0022665.1 mouse_genomes_project 16 59236196 59428232 - Epha6 protein_coding retained_intron MGP_C3HHeJ_T0044519.1 MGP_C3HHeJ_G0022665.1 mouse_genomes_project 16 59298434 59427920 - Epha6 protein_coding processed_transcript MGP_C3HHeJ_T0042778.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5361983 5475136 - MGP_C3HHeJ_P0042778 Usp7 protein_coding protein_coding MGP_C3HHeJ_T0042779.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5361988 5413913 - MGP_C3HHeJ_P0042779 Usp7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042780.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5362534 5413836 - MGP_C3HHeJ_P0042780 Usp7 protein_coding protein_coding MGP_C3HHeJ_T0042781.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5363168 5394755 - Usp7 protein_coding processed_transcript MGP_C3HHeJ_T0042782.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5368565 5371219 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042783.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5369065 5369970 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042784.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5369864 5370921 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042785.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5370039 5379828 - MGP_C3HHeJ_P0042785 Usp7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042786.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5372545 5376880 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042787.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5376564 5380026 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042788.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5378043 5378408 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042789.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5378052 5379318 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0042790.1 MGP_C3HHeJ_G0022232.1 mouse_genomes_project 16 5379058 5379927 - Usp7 protein_coding retained_intron MGP_C3HHeJ_T0044068.1 MGP_C3HHeJ_G0022535.1 mouse_genomes_project 16 35960203 35965719 - Gm36028 protein_coding retained_intron MGP_C3HHeJ_T0044069.1 MGP_C3HHeJ_G0022535.1 mouse_genomes_project 16 35960203 35970454 - MGP_C3HHeJ_P0044069 Gm36028 protein_coding protein_coding MGP_C3HHeJ_T0010051.1 MGP_C3HHeJ_G0008184.1 mouse_genomes_project 16 30951701 30951786 + Mir1947 miRNA miRNA MGP_C3HHeJ_T0013009.1 MGP_C3HHeJ_G0011113.1 mouse_genomes_project 16 20729677 20730704 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042812.1 MGP_C3HHeJ_G0022240.1 mouse_genomes_project 16 7222512 7249292 - MGP_C3HHeJ_P0042812 Tvp23a protein_coding protein_coding MGP_C3HHeJ_T0042814.1 MGP_C3HHeJ_G0022240.1 mouse_genomes_project 16 7225199 7249074 - MGP_C3HHeJ_P0042814 Tvp23a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042815.1 MGP_C3HHeJ_G0022240.1 mouse_genomes_project 16 7226166 7249257 - Tvp23a protein_coding processed_transcript MGP_C3HHeJ_T0042816.1 MGP_C3HHeJ_G0022240.1 mouse_genomes_project 16 7227818 7231129 - Tvp23a protein_coding processed_transcript MGP_C3HHeJ_T0042817.1 MGP_C3HHeJ_G0022240.1 mouse_genomes_project 16 7228994 7231205 - Tvp23a protein_coding processed_transcript MGP_C3HHeJ_T0042587.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 367709 398935 + MGP_C3HHeJ_P0042587 Naa60 protein_coding protein_coding MGP_C3HHeJ_T0042588.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 379944 402904 + MGP_C3HHeJ_P0042588 Naa60 protein_coding protein_coding MGP_C3HHeJ_T0042590.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 379984 400172 + MGP_C3HHeJ_P0042590 Naa60 protein_coding protein_coding MGP_C3HHeJ_T0042591.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 379993 395472 + MGP_C3HHeJ_P0042591 Naa60 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042592.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 380008 401873 + MGP_C3HHeJ_P0042592 Naa60 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042593.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 380008 402894 + MGP_C3HHeJ_P0042593 Naa60 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042594.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 380011 395503 + MGP_C3HHeJ_P0042594 Naa60 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042595.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 380038 398524 + Naa60 protein_coding retained_intron MGP_C3HHeJ_T0042596.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 380094 402893 + MGP_C3HHeJ_P0042596 Naa60 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042597.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 392498 399938 + MGP_C3HHeJ_P0042597 Naa60 protein_coding protein_coding MGP_C3HHeJ_T0042598.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 392498 400063 + MGP_C3HHeJ_P0042598 Naa60 protein_coding protein_coding MGP_C3HHeJ_T0042599.1 MGP_C3HHeJ_G0022186.1 mouse_genomes_project 16 392498 400500 + MGP_C3HHeJ_P0042599 Naa60 protein_coding protein_coding MGP_C3HHeJ_T0000917.1 MGP_C3HHeJ_G0000857.1 mouse_genomes_project 16 407750 408118 - TEC TEC MGP_C3HHeJ_T0000918.1 MGP_C3HHeJ_G0000857.1 mouse_genomes_project 16 407782 408118 - TEC TEC MGP_C3HHeJ_T0044498.1 MGP_C3HHeJ_G0022658.1 mouse_genomes_project 16 58068966 58070053 - MGP_C3HHeJ_P0044498 Olfr204 protein_coding protein_coding MGP_C3HHeJ_T0043327.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16038454 16041991 + MGP_C3HHeJ_P0043327 Ufd1l protein_coding protein_coding MGP_C3HHeJ_T0043328.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16038499 16060934 + MGP_C3HHeJ_P0043328 Ufd1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043329.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16038507 16061880 + MGP_C3HHeJ_P0043329 Ufd1l protein_coding protein_coding MGP_C3HHeJ_T0043330.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16038969 16042544 + Ufd1l protein_coding processed_transcript MGP_C3HHeJ_T0043331.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16038969 16061885 + MGP_C3HHeJ_P0043331 Ufd1l protein_coding protein_coding MGP_C3HHeJ_T0043332.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16038996 16054317 + MGP_C3HHeJ_P0043332 Ufd1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043333.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16039031 16051676 + MGP_C3HHeJ_P0043333 Ufd1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043334.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16049859 16060878 + Ufd1l protein_coding retained_intron MGP_C3HHeJ_T0043335.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16053680 16055075 + MGP_C3HHeJ_P0043335 Ufd1l protein_coding protein_coding MGP_C3HHeJ_T0043336.1 MGP_C3HHeJ_G0022352.1 mouse_genomes_project 16 16053868 16061028 + Ufd1l protein_coding retained_intron MGP_C3HHeJ_T0043597.1 MGP_C3HHeJ_G0022416.1 mouse_genomes_project 16 21162109 21166360 + MGP_C3HHeJ_P0043597 Rtp4 protein_coding protein_coding MGP_C3HHeJ_T0044755.1 MGP_C3HHeJ_G0022762.1 mouse_genomes_project 16 90819826 90830109 - MGP_C3HHeJ_P0044755 1110004E09Rik protein_coding protein_coding MGP_C3HHeJ_T0044756.1 MGP_C3HHeJ_G0022762.1 mouse_genomes_project 16 90819970 90824001 - MGP_C3HHeJ_P0044756 1110004E09Rik protein_coding protein_coding MGP_C3HHeJ_T0044757.1 MGP_C3HHeJ_G0022762.1 mouse_genomes_project 16 90819987 90830209 - MGP_C3HHeJ_P0044757 1110004E09Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044758.1 MGP_C3HHeJ_G0022762.1 mouse_genomes_project 16 90821136 90830005 - MGP_C3HHeJ_P0044758 1110004E09Rik protein_coding protein_coding MGP_C3HHeJ_T0044759.1 MGP_C3HHeJ_G0022762.1 mouse_genomes_project 16 90821199 90829788 - MGP_C3HHeJ_P0044759 1110004E09Rik protein_coding protein_coding MGP_C3HHeJ_T0044760.1 MGP_C3HHeJ_G0022762.1 mouse_genomes_project 16 90821397 90830108 - 1110004E09Rik protein_coding processed_transcript MGP_C3HHeJ_T0012984.1 MGP_C3HHeJ_G0011088.1 mouse_genomes_project 16 8031428 8032440 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010080.1 MGP_C3HHeJ_G0008213.1 mouse_genomes_project 16 93359777 93359874 + Mir802 miRNA miRNA MGP_C3HHeJ_T0097866.1 MGP_C3HHeJ_G0036078.1 mouse_genomes_project 16 12895945 12897126 + pseudogene pseudogene MGP_C3HHeJ_T0101777.1 MGP_C3HHeJ_G0039742.1 mouse_genomes_project 16 57716436 57717340 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0012981.1 MGP_C3HHeJ_G0011085.1 mouse_genomes_project 16 6793798 6794564 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013052.1 MGP_C3HHeJ_G0011156.1 mouse_genomes_project 16 75498306 75499054 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099029.1 MGP_C3HHeJ_G0037223.1 mouse_genomes_project 16 14449276 14449383 - Gm24927 snRNA snRNA MGP_C3HHeJ_T0044592.1 MGP_C3HHeJ_G0022689.1 mouse_genomes_project 16 76399445 76505013 + MGP_C3HHeJ_P0044592 Usp25 protein_coding protein_coding MGP_C3HHeJ_T0042848.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7910863 7973545 - MGP_C3HHeJ_P0042848 Txndc11 protein_coding protein_coding MGP_C3HHeJ_T0042849.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7911377 7920746 - Txndc11 protein_coding retained_intron MGP_C3HHeJ_T0042850.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7920712 7923305 - Txndc11 protein_coding processed_transcript MGP_C3HHeJ_T0042851.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7921471 7973506 - MGP_C3HHeJ_P0042851 Txndc11 protein_coding protein_coding MGP_C3HHeJ_T0042852.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7923187 7973468 - MGP_C3HHeJ_P0042852 Txndc11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042853.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7924224 7962173 - Txndc11 protein_coding processed_transcript MGP_C3HHeJ_T0042854.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7941154 7973448 - MGP_C3HHeJ_P0042854 Txndc11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042855.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7942500 7973545 - MGP_C3HHeJ_P0042855 Txndc11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042856.1 MGP_C3HHeJ_G0022253.1 mouse_genomes_project 16 7953508 7973508 - MGP_C3HHeJ_P0042856 Txndc11 protein_coding protein_coding MGP_C3HHeJ_T0012975.1 MGP_C3HHeJ_G0011079.1 mouse_genomes_project 16 426504 427070 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003629.1 MGP_C3HHeJ_G0003282.1 mouse_genomes_project 16 98195859 98198678 - C030010L15Rik antisense antisense MGP_C3HHeJ_T0003630.1 MGP_C3HHeJ_G0003282.1 mouse_genomes_project 16 98195921 98196402 - C030010L15Rik antisense antisense MGP_C3HHeJ_T0044880.1 MGP_C3HHeJ_G0022783.1 mouse_genomes_project 16 92010365 92039491 + MGP_C3HHeJ_P0044880 Slc5a3 protein_coding protein_coding MGP_C3HHeJ_T0044881.1 MGP_C3HHeJ_G0022783.1 mouse_genomes_project 16 92030079 92035826 + MGP_C3HHeJ_P0044881 Slc5a3 protein_coding protein_coding MGP_C3HHeJ_T0006761.1 MGP_C3HHeJ_G0005570.1 mouse_genomes_project 16 27911967 27916901 - Gm26562 lincRNA lincRNA MGP_C3HHeJ_T0099022.1 MGP_C3HHeJ_G0037216.1 mouse_genomes_project 16 4985113 4985217 + Gm26159 snRNA snRNA MGP_C3HHeJ_T0044063.1 MGP_C3HHeJ_G0022534.1 mouse_genomes_project 16 35886477 35945805 + MGP_C3HHeJ_P0044063 Fstl1 protein_coding protein_coding MGP_C3HHeJ_T0044064.1 MGP_C3HHeJ_G0022534.1 mouse_genomes_project 16 35886679 35904036 + Fstl1 protein_coding processed_transcript MGP_C3HHeJ_T0044065.1 MGP_C3HHeJ_G0022534.1 mouse_genomes_project 16 35886756 35928227 + Fstl1 protein_coding retained_intron MGP_C3HHeJ_T0044066.1 MGP_C3HHeJ_G0022534.1 mouse_genomes_project 16 35924990 35943722 + Fstl1 protein_coding processed_transcript MGP_C3HHeJ_T0044067.1 MGP_C3HHeJ_G0022534.1 mouse_genomes_project 16 35932005 35944920 + Fstl1 protein_coding processed_transcript MGP_C3HHeJ_T0003583.1 MGP_C3HHeJ_G0003244.1 mouse_genomes_project 16 10665994 10674048 + Pla2g10os antisense antisense MGP_C3HHeJ_T0017279.1 MGP_C3HHeJ_G0015082.1 mouse_genomes_project 16 54549398 54567863 + Gm28037 processed_transcript processed_transcript MGP_C3HHeJ_T0013033.1 MGP_C3HHeJ_G0011137.1 mouse_genomes_project 16 43540359 43540761 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0042998.1 MGP_C3HHeJ_G0022289.1 mouse_genomes_project 16 13315852 13321830 + MGP_C3HHeJ_P0042998 Yars2 protein_coding protein_coding MGP_C3HHeJ_T0042999.1 MGP_C3HHeJ_G0022289.1 mouse_genomes_project 16 13315861 13320411 + Yars2 protein_coding retained_intron MGP_C3HHeJ_T0043000.1 MGP_C3HHeJ_G0022289.1 mouse_genomes_project 16 13315865 13322528 + MGP_C3HHeJ_P0043000 Yars2 protein_coding protein_coding MGP_C3HHeJ_T0043001.1 MGP_C3HHeJ_G0022289.1 mouse_genomes_project 16 13315868 13322520 + MGP_C3HHeJ_P0043001 Yars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043002.1 MGP_C3HHeJ_G0022289.1 mouse_genomes_project 16 13316440 13320129 + Yars2 protein_coding processed_transcript MGP_C3HHeJ_T0043003.1 MGP_C3HHeJ_G0022289.1 mouse_genomes_project 16 13317487 13320268 + MGP_C3HHeJ_P0043003 Yars2 protein_coding protein_coding MGP_C3HHeJ_T0013056.1 MGP_C3HHeJ_G0011160.1 mouse_genomes_project 16 87327474 87327864 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099021.1 MGP_C3HHeJ_G0037215.1 mouse_genomes_project 16 1616640 1616748 - Gm23483 snRNA snRNA MGP_C3HHeJ_T0044459.1 MGP_C3HHeJ_G0022635.1 mouse_genomes_project 16 57324116 57336960 + MGP_C3HHeJ_P0044459 Cpox protein_coding protein_coding MGP_C3HHeJ_T0043207.1 MGP_C3HHeJ_G0022322.1 mouse_genomes_project 16 14932363 14943267 + MGP_C3HHeJ_P0043207 Scarf2 protein_coding protein_coding MGP_C3HHeJ_T0100313.1 MGP_C3HHeJ_G0038507.1 mouse_genomes_project 16 59932825 59932902 + Gm23852 snoRNA snoRNA MGP_C3HHeJ_T0044597.1 MGP_C3HHeJ_G0022693.1 mouse_genomes_project 16 77759131 77780802 - MGP_C3HHeJ_P0044597 protein_coding protein_coding MGP_C3HHeJ_T0044666.1 MGP_C3HHeJ_G0022713.1 mouse_genomes_project 16 87493201 87527390 + MGP_C3HHeJ_P0044666 Bach1 protein_coding protein_coding MGP_C3HHeJ_T0044667.1 MGP_C3HHeJ_G0022713.1 mouse_genomes_project 16 87493221 87526808 + Bach1 protein_coding processed_transcript MGP_C3HHeJ_T0044668.1 MGP_C3HHeJ_G0022713.1 mouse_genomes_project 16 87493260 87517133 + Bach1 protein_coding retained_intron MGP_C3HHeJ_T0013012.1 MGP_C3HHeJ_G0011116.1 mouse_genomes_project 16 25003874 25004708 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044473.1 MGP_C3HHeJ_G0022642.1 mouse_genomes_project 16 57583772 57600641 - MGP_C3HHeJ_P0044473 protein_coding protein_coding MGP_C3HHeJ_T0044474.1 MGP_C3HHeJ_G0022642.1 mouse_genomes_project 16 57585136 57587986 - MGP_C3HHeJ_P0044474 protein_coding protein_coding MGP_C3HHeJ_T0044338.1 MGP_C3HHeJ_G0022603.1 mouse_genomes_project 16 48056075 48124000 + MGP_C3HHeJ_P0044338 Ift57 protein_coding protein_coding MGP_C3HHeJ_T0044339.1 MGP_C3HHeJ_G0022603.1 mouse_genomes_project 16 48056145 48121505 + MGP_C3HHeJ_P0044339 Ift57 protein_coding protein_coding MGP_C3HHeJ_T0044340.1 MGP_C3HHeJ_G0022603.1 mouse_genomes_project 16 48056196 48068524 + Ift57 protein_coding processed_transcript MGP_C3HHeJ_T0044341.1 MGP_C3HHeJ_G0022603.1 mouse_genomes_project 16 48067577 48122991 + MGP_C3HHeJ_P0044341 Ift57 protein_coding protein_coding MGP_C3HHeJ_T0010047.1 MGP_C3HHeJ_G0008180.1 mouse_genomes_project 16 26255622 26255731 - Mir690 miRNA miRNA MGP_C3HHeJ_T0042737.1 MGP_C3HHeJ_G0022219.1 mouse_genomes_project 16 1706333 1748487 + MGP_C3HHeJ_P0042737 Sec14l5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099057.1 MGP_C3HHeJ_G0037251.1 mouse_genomes_project 16 53538109 53538216 + Gm22977 snRNA snRNA MGP_C3HHeJ_T0042841.1 MGP_C3HHeJ_G0022250.1 mouse_genomes_project 16 7653213 7663736 + MGP_C3HHeJ_P0042841 Rmi2 protein_coding protein_coding MGP_C3HHeJ_T0042842.1 MGP_C3HHeJ_G0022250.1 mouse_genomes_project 16 7653222 7715495 + MGP_C3HHeJ_P0042842 Rmi2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0099040.1 MGP_C3HHeJ_G0037234.1 mouse_genomes_project 16 33333575 33333728 - Gm23518 snRNA snRNA MGP_C3HHeJ_T0042965.1 MGP_C3HHeJ_G0022276.1 mouse_genomes_project 16 11172185 11260813 - MGP_C3HHeJ_P0042965 Myh11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042966.1 MGP_C3HHeJ_G0022276.1 mouse_genomes_project 16 11172186 11274232 - MGP_C3HHeJ_P0042966 Myh11 protein_coding protein_coding MGP_C3HHeJ_T0044495.1 MGP_C3HHeJ_G0022655.1 mouse_genomes_project 16 58034765 58035689 - MGP_C3HHeJ_P0044495 Olfr202 protein_coding protein_coding MGP_C3HHeJ_T0044483.1 MGP_C3HHeJ_G0022646.1 mouse_genomes_project 16 57686815 57687820 - MGP_C3HHeJ_P0044483 Olfr186 protein_coding protein_coding MGP_C3HHeJ_T0044484.1 MGP_C3HHeJ_G0022646.1 mouse_genomes_project 16 57687412 57690111 - MGP_C3HHeJ_P0044484 Olfr186 protein_coding protein_coding MGP_C3HHeJ_T0044599.1 MGP_C3HHeJ_G0022695.1 mouse_genomes_project 16 77950241 77977328 - MGP_C3HHeJ_P0044599 D16Ertd472e protein_coding protein_coding MGP_C3HHeJ_T0044600.1 MGP_C3HHeJ_G0022695.1 mouse_genomes_project 16 77950918 77977328 - MGP_C3HHeJ_P0044600 D16Ertd472e protein_coding protein_coding MGP_C3HHeJ_T0044601.1 MGP_C3HHeJ_G0022695.1 mouse_genomes_project 16 77951190 77977328 - MGP_C3HHeJ_P0044601 D16Ertd472e protein_coding protein_coding MGP_C3HHeJ_T0100320.1 MGP_C3HHeJ_G0038514.1 mouse_genomes_project 16 77645807 77645938 + Gm25916 snoRNA snoRNA MGP_C3HHeJ_T0099063.1 MGP_C3HHeJ_G0037257.1 mouse_genomes_project 16 72708190 72708357 - Gm25699 snRNA snRNA MGP_C3HHeJ_T0044778.1 MGP_C3HHeJ_G0022765.1 mouse_genomes_project 16 90950066 90965277 - MGP_C3HHeJ_P0044778 4932438H23Rik protein_coding protein_coding MGP_C3HHeJ_T0044779.1 MGP_C3HHeJ_G0022765.1 mouse_genomes_project 16 90950066 90965277 - MGP_C3HHeJ_P0044779 4932438H23Rik protein_coding protein_coding MGP_C3HHeJ_T0044780.1 MGP_C3HHeJ_G0022765.1 mouse_genomes_project 16 90951969 90991420 - MGP_C3HHeJ_P0044780 4932438H23Rik protein_coding protein_coding MGP_C3HHeJ_T0099025.1 MGP_C3HHeJ_G0037219.1 mouse_genomes_project 16 7826317 7826501 + Gm24961 snRNA snRNA MGP_C3HHeJ_T0006737.1 MGP_C3HHeJ_G0005549.1 mouse_genomes_project 16 1480920 1485458 - Gm16861 lincRNA lincRNA MGP_C3HHeJ_T0044696.1 MGP_C3HHeJ_G0022735.1 mouse_genomes_project 16 88788417 88789018 - MGP_C3HHeJ_P0044696 Krtap16-3 protein_coding protein_coding MGP_C3HHeJ_T0044443.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57125257 57185077 - MGP_C3HHeJ_P0044443 St3gal6 protein_coding protein_coding MGP_C3HHeJ_T0044444.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57126885 57185894 - MGP_C3HHeJ_P0044444 St3gal6 protein_coding protein_coding MGP_C3HHeJ_T0044445.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57127344 57185836 - MGP_C3HHeJ_P0044445 St3gal6 protein_coding protein_coding MGP_C3HHeJ_T0044446.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57132989 57185204 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044447.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57143555 57146561 - St3gal6 protein_coding retained_intron MGP_C3HHeJ_T0044448.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57146054 57185095 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044449.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57146067 57185820 - MGP_C3HHeJ_P0044449 St3gal6 protein_coding protein_coding MGP_C3HHeJ_T0044450.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57150826 57185820 - MGP_C3HHeJ_P0044450 St3gal6 protein_coding protein_coding MGP_C3HHeJ_T0044451.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57150878 57159074 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044452.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57150880 57184995 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044453.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57150889 57185785 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044454.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57150889 57185375 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044455.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57162593 57185409 - St3gal6 protein_coding processed_transcript MGP_C3HHeJ_T0044456.1 MGP_C3HHeJ_G0022632.1 mouse_genomes_project 16 57162593 57168354 - St3gal6 protein_coding retained_intron MGP_C3HHeJ_T0012973.1 MGP_C3HHeJ_G0011077.1 mouse_genomes_project 16 10997 11432 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045045.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96333103 96361330 + MGP_C3HHeJ_P0045045 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045046.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96333304 96356830 + MGP_C3HHeJ_P0045046 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045047.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96333304 96361325 + MGP_C3HHeJ_P0045047 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045048.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96333337 96352370 + MGP_C3HHeJ_P0045048 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045049.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96333362 96356861 + MGP_C3HHeJ_P0045049 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045050.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96337658 96352370 + MGP_C3HHeJ_P0045050 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045051.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96338576 96356833 + MGP_C3HHeJ_P0045051 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0045052.1 MGP_C3HHeJ_G0022814.1 mouse_genomes_project 16 96352277 96361322 + MGP_C3HHeJ_P0045052 Sh3bgr protein_coding protein_coding MGP_C3HHeJ_T0098376.1 MGP_C3HHeJ_G0036583.1 mouse_genomes_project 16 11299253 11300465 - Gm15869 sense_intronic sense_intronic MGP_C3HHeJ_T0000940.1 MGP_C3HHeJ_G0000878.1 mouse_genomes_project 16 77006052 77008076 + TEC TEC MGP_C3HHeJ_T0011310.1 MGP_C3HHeJ_G0009443.1 mouse_genomes_project 16 17721230 17721505 + Gm23332 misc_RNA misc_RNA MGP_C3HHeJ_T0044071.1 MGP_C3HHeJ_G0022537.1 mouse_genomes_project 16 36028841 36123611 + MGP_C3HHeJ_P0044071 Gpr156 protein_coding protein_coding MGP_C3HHeJ_T0043669.1 MGP_C3HHeJ_G0022439.1 mouse_genomes_project 16 27654904 27658719 - MGP_C3HHeJ_P0043669 Gm1968 protein_coding protein_coding MGP_C3HHeJ_T0044697.1 MGP_C3HHeJ_G0022736.1 mouse_genomes_project 16 88838774 88839154 - MGP_C3HHeJ_P0044697 Krtap22-2 protein_coding protein_coding MGP_C3HHeJ_T0100324.1 MGP_C3HHeJ_G0038518.1 mouse_genomes_project 16 84851982 84852135 + Gm27295 snoRNA snoRNA MGP_C3HHeJ_T0042662.1 MGP_C3HHeJ_G0022200.1 mouse_genomes_project 16 1147404 1147929 - protein_coding retained_intron MGP_C3HHeJ_T0042663.1 MGP_C3HHeJ_G0022200.1 mouse_genomes_project 16 1147404 1155877 - MGP_C3HHeJ_P0042663 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042664.1 MGP_C3HHeJ_G0022200.1 mouse_genomes_project 16 1147404 1155929 - MGP_C3HHeJ_P0042664 protein_coding protein_coding MGP_C3HHeJ_T0042665.1 MGP_C3HHeJ_G0022200.1 mouse_genomes_project 16 1147542 1149095 - protein_coding retained_intron MGP_C3HHeJ_T0044578.1 MGP_C3HHeJ_G0022686.1 mouse_genomes_project 16 75098268 75109900 - MGP_C3HHeJ_P0044578 Hspa13 protein_coding protein_coding MGP_C3HHeJ_T0044579.1 MGP_C3HHeJ_G0022686.1 mouse_genomes_project 16 75099718 75109870 - MGP_C3HHeJ_P0044579 Hspa13 protein_coding protein_coding MGP_C3HHeJ_T0044580.1 MGP_C3HHeJ_G0022686.1 mouse_genomes_project 16 75102266 75109861 - Hspa13 protein_coding retained_intron MGP_C3HHeJ_T0042843.1 MGP_C3HHeJ_G0022251.1 mouse_genomes_project 16 7788907 7825055 - MGP_C3HHeJ_P0042843 Litaf protein_coding protein_coding MGP_C3HHeJ_T0042844.1 MGP_C3HHeJ_G0022251.1 mouse_genomes_project 16 7790458 7806412 - MGP_C3HHeJ_P0042844 Litaf protein_coding protein_coding MGP_C3HHeJ_T0042845.1 MGP_C3HHeJ_G0022251.1 mouse_genomes_project 16 7794221 7902097 - MGP_C3HHeJ_P0042845 Litaf protein_coding protein_coding MGP_C3HHeJ_T0042846.1 MGP_C3HHeJ_G0022251.1 mouse_genomes_project 16 7797189 7825005 - Litaf protein_coding retained_intron MGP_C3HHeJ_T0012990.1 MGP_C3HHeJ_G0011094.1 mouse_genomes_project 16 12189218 12189688 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017271.1 MGP_C3HHeJ_G0015079.1 mouse_genomes_project 16 24348704 24388674 - Gm20319 processed_transcript processed_transcript MGP_C3HHeJ_T0017272.1 MGP_C3HHeJ_G0015079.1 mouse_genomes_project 16 24349002 24388685 - Gm20319 processed_transcript processed_transcript MGP_C3HHeJ_T0017273.1 MGP_C3HHeJ_G0015079.1 mouse_genomes_project 16 24364177 24388685 - Gm20319 processed_transcript processed_transcript MGP_C3HHeJ_T0042980.1 MGP_C3HHeJ_G0022279.1 mouse_genomes_project 16 11492168 11499337 + MGP_C3HHeJ_P0042980 Gm1758 protein_coding protein_coding MGP_C3HHeJ_T0010046.1 MGP_C3HHeJ_G0008179.1 mouse_genomes_project 16 22413997 22414083 + Mir28a miRNA miRNA MGP_C3HHeJ_T0010049.1 MGP_C3HHeJ_G0008182.1 mouse_genomes_project 16 30072512 30072646 - Mir1946a miRNA miRNA MGP_C3HHeJ_T0044127.1 MGP_C3HHeJ_G0022554.1 mouse_genomes_project 16 37029879 37178599 + MGP_C3HHeJ_P0044127 Igsf11 protein_coding protein_coding MGP_C3HHeJ_T0042582.1 MGP_C3HHeJ_G0022185.1 mouse_genomes_project 16 354153 361657 - Zfp597 protein_coding processed_transcript MGP_C3HHeJ_T0042583.1 MGP_C3HHeJ_G0022185.1 mouse_genomes_project 16 357360 367731 - MGP_C3HHeJ_P0042583 Zfp597 protein_coding protein_coding MGP_C3HHeJ_T0042584.1 MGP_C3HHeJ_G0022185.1 mouse_genomes_project 16 358216 379831 - Zfp597 protein_coding processed_transcript MGP_C3HHeJ_T0042585.1 MGP_C3HHeJ_G0022185.1 mouse_genomes_project 16 361122 379887 - Zfp597 protein_coding processed_transcript MGP_C3HHeJ_T0042586.1 MGP_C3HHeJ_G0022185.1 mouse_genomes_project 16 362421 367068 - Zfp597 protein_coding retained_intron MGP_C3HHeJ_T0044097.1 MGP_C3HHeJ_G0022548.1 mouse_genomes_project 16 36664594 36689933 - MGP_C3HHeJ_P0044097 Poglut1 protein_coding protein_coding MGP_C3HHeJ_T0044098.1 MGP_C3HHeJ_G0022548.1 mouse_genomes_project 16 36664597 36689897 - Poglut1 protein_coding retained_intron MGP_C3HHeJ_T0044099.1 MGP_C3HHeJ_G0022548.1 mouse_genomes_project 16 36666082 36689883 - MGP_C3HHeJ_P0044099 Poglut1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044100.1 MGP_C3HHeJ_G0022548.1 mouse_genomes_project 16 36668948 36671956 - Poglut1 protein_coding retained_intron MGP_C3HHeJ_T0044101.1 MGP_C3HHeJ_G0022548.1 mouse_genomes_project 16 36673560 36677429 - Poglut1 protein_coding retained_intron MGP_C3HHeJ_T0044102.1 MGP_C3HHeJ_G0022548.1 mouse_genomes_project 16 36687694 36689897 - Poglut1 protein_coding retained_intron MGP_C3HHeJ_T0044228.1 MGP_C3HHeJ_G0022574.1 mouse_genomes_project 16 43161331 43187098 + MGP_C3HHeJ_P0044228 Cd200r4 protein_coding protein_coding MGP_C3HHeJ_T0044229.1 MGP_C3HHeJ_G0022574.1 mouse_genomes_project 16 43161354 43187097 + MGP_C3HHeJ_P0044229 Cd200r4 protein_coding protein_coding MGP_C3HHeJ_T0044230.1 MGP_C3HHeJ_G0022574.1 mouse_genomes_project 16 43170233 43187114 + MGP_C3HHeJ_P0044230 Cd200r4 protein_coding protein_coding MGP_C3HHeJ_T0043247.1 MGP_C3HHeJ_G0022338.1 mouse_genomes_project 16 15425323 15434103 - MGP_C3HHeJ_P0043247 Ranbp1 protein_coding protein_coding MGP_C3HHeJ_T0043248.1 MGP_C3HHeJ_G0022338.1 mouse_genomes_project 16 15430509 15434187 - Ranbp1 protein_coding retained_intron MGP_C3HHeJ_T0043249.1 MGP_C3HHeJ_G0022338.1 mouse_genomes_project 16 15430745 15433975 - Ranbp1 protein_coding processed_transcript MGP_C3HHeJ_T0043713.1 MGP_C3HHeJ_G0022452.1 mouse_genomes_project 16 29195003 29235651 + MGP_C3HHeJ_P0043713 Bdh1 protein_coding protein_coding MGP_C3HHeJ_T0043714.1 MGP_C3HHeJ_G0022452.1 mouse_genomes_project 16 29204047 29237055 + MGP_C3HHeJ_P0043714 Bdh1 protein_coding protein_coding MGP_C3HHeJ_T0043715.1 MGP_C3HHeJ_G0022452.1 mouse_genomes_project 16 29204051 29214478 + Bdh1 protein_coding retained_intron MGP_C3HHeJ_T0043716.1 MGP_C3HHeJ_G0022452.1 mouse_genomes_project 16 29204598 29235376 + MGP_C3HHeJ_P0043716 Bdh1 protein_coding protein_coding MGP_C3HHeJ_T0043717.1 MGP_C3HHeJ_G0022452.1 mouse_genomes_project 16 29211357 29234904 + MGP_C3HHeJ_P0043717 Bdh1 protein_coding protein_coding MGP_C3HHeJ_T0043718.1 MGP_C3HHeJ_G0022452.1 mouse_genomes_project 16 29236269 29237055 + Bdh1 protein_coding processed_transcript MGP_C3HHeJ_T0044140.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41183400 41350529 + Zbtb20 protein_coding processed_transcript MGP_C3HHeJ_T0044141.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41183550 41861644 + Zbtb20 protein_coding processed_transcript MGP_C3HHeJ_T0044142.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41183653 41869532 + MGP_C3HHeJ_P0044142 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044143.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41183660 41751741 + Zbtb20 protein_coding retained_intron MGP_C3HHeJ_T0044144.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41517930 41902041 + MGP_C3HHeJ_P0044144 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044145.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41518089 41588894 + Zbtb20 protein_coding retained_intron MGP_C3HHeJ_T0044146.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41648602 41861624 + Zbtb20 protein_coding processed_transcript MGP_C3HHeJ_T0044147.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41649018 41870558 + Zbtb20 protein_coding retained_intron MGP_C3HHeJ_T0044148.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41649429 41901988 + MGP_C3HHeJ_P0044148 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044149.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41649760 41901995 + MGP_C3HHeJ_P0044149 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044150.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41794575 41869000 + MGP_C3HHeJ_P0044150 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044151.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41794583 41863638 + MGP_C3HHeJ_P0044151 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044152.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41794603 41902230 + MGP_C3HHeJ_P0044152 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044153.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41794658 41868981 + Zbtb20 protein_coding processed_transcript MGP_C3HHeJ_T0044154.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41799070 41861644 + Zbtb20 protein_coding processed_transcript MGP_C3HHeJ_T0044155.1 MGP_C3HHeJ_G0022557.1 mouse_genomes_project 16 41861142 41911212 + MGP_C3HHeJ_P0044155 Zbtb20 protein_coding protein_coding MGP_C3HHeJ_T0044320.1 MGP_C3HHeJ_G0022598.1 mouse_genomes_project 16 47233039 47234950 + MGP_C3HHeJ_P0044320 Retnla protein_coding protein_coding MGP_C3HHeJ_T0006741.1 MGP_C3HHeJ_G0005553.1 mouse_genomes_project 16 8018886 8034470 + 4930509G22Rik lincRNA lincRNA MGP_C3HHeJ_T0043403.1 MGP_C3HHeJ_G0022373.1 mouse_genomes_project 16 17778642 17791833 + MGP_C3HHeJ_P0043403 Eif2b5 protein_coding protein_coding MGP_C3HHeJ_T0043404.1 MGP_C3HHeJ_G0022373.1 mouse_genomes_project 16 17787554 17791201 + MGP_C3HHeJ_P0043404 Eif2b5 protein_coding protein_coding MGP_C3HHeJ_T0043321.1 MGP_C3HHeJ_G0022349.1 mouse_genomes_project 16 15829714 15837830 - MGP_C3HHeJ_P0043321 Sept5 protein_coding protein_coding MGP_C3HHeJ_T0043322.1 MGP_C3HHeJ_G0022349.1 mouse_genomes_project 16 15830643 15834060 - MGP_C3HHeJ_P0043322 Sept5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0042955.1 MGP_C3HHeJ_G0022273.1 mouse_genomes_project 16 10943227 11072447 + MGP_C3HHeJ_P0042955 2900011O08Rik protein_coding protein_coding MGP_C3HHeJ_T0044290.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44104977 44204135 - MGP_C3HHeJ_P0044290 Phldb2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044291.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44104987 44204212 - MGP_C3HHeJ_P0044291 Phldb2 protein_coding protein_coding MGP_C3HHeJ_T0044292.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44105138 44204067 - MGP_C3HHeJ_P0044292 Phldb2 protein_coding protein_coding MGP_C3HHeJ_T0044293.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44105904 44159768 - MGP_C3HHeJ_P0044293 Phldb2 protein_coding protein_coding MGP_C3HHeJ_T0044294.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44113845 44314396 - MGP_C3HHeJ_P0044294 Phldb2 protein_coding protein_coding MGP_C3HHeJ_T0044295.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44120015 44129561 - Phldb2 protein_coding processed_transcript MGP_C3HHeJ_T0044296.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44134999 44146346 - Phldb2 protein_coding processed_transcript MGP_C3HHeJ_T0044297.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44137559 44149646 - MGP_C3HHeJ_P0044297 Phldb2 protein_coding protein_coding MGP_C3HHeJ_T0044298.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44185433 44314291 - MGP_C3HHeJ_P0044298 Phldb2 protein_coding protein_coding MGP_C3HHeJ_T0044299.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44185602 44204177 - Phldb2 protein_coding processed_transcript MGP_C3HHeJ_T0044300.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44260413 44261340 - Phldb2 protein_coding processed_transcript MGP_C3HHeJ_T0044301.1 MGP_C3HHeJ_G0022589.1 mouse_genomes_project 16 44260604 44314331 - Phldb2 protein_coding processed_transcript MGP_C3HHeJ_T0006764.1 MGP_C3HHeJ_G0005573.1 mouse_genomes_project 16 33759855 33762852 - Gm26838 lincRNA lincRNA MGP_C3HHeJ_T0043736.1 MGP_C3HHeJ_G0022455.1 mouse_genomes_project 16 29723515 29735788 + MGP_C3HHeJ_P0043736 Pigz protein_coding protein_coding MGP_C3HHeJ_T0043737.1 MGP_C3HHeJ_G0022455.1 mouse_genomes_project 16 29723607 29734090 + Pigz protein_coding processed_transcript MGP_C3HHeJ_T0043738.1 MGP_C3HHeJ_G0022455.1 mouse_genomes_project 16 29723646 29732374 + Pigz protein_coding processed_transcript MGP_C3HHeJ_T0043739.1 MGP_C3HHeJ_G0022455.1 mouse_genomes_project 16 29731766 29732370 + Pigz protein_coding processed_transcript MGP_C3HHeJ_T0044490.1 MGP_C3HHeJ_G0022650.1 mouse_genomes_project 16 57840896 57841891 + MGP_C3HHeJ_P0044490 Olfr195 protein_coding protein_coding MGP_C3HHeJ_T0101773.1 MGP_C3HHeJ_G0039738.1 mouse_genomes_project 16 34109614 34111247 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0043357.1 MGP_C3HHeJ_G0022361.1 mouse_genomes_project 16 16785911 16786852 - MGP_C3HHeJ_P0043357 protein_coding protein_coding MGP_C3HHeJ_T0042755.1 MGP_C3HHeJ_G0022225.1 mouse_genomes_project 16 5063489 5083441 - MGP_C3HHeJ_P0042755 Tmem114 protein_coding protein_coding MGP_C3HHeJ_T0042753.1 MGP_C3HHeJ_G0022224.1 mouse_genomes_project 16 3423401 4012184 + MGP_C3HHeJ_P0042753 Rbfox1 protein_coding protein_coding MGP_C3HHeJ_T0042754.1 MGP_C3HHeJ_G0022224.1 mouse_genomes_project 16 3851359 4031042 + MGP_C3HHeJ_P0042754 Rbfox1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0044050.1 MGP_C3HHeJ_G0022530.1 mouse_genomes_project 16 35609961 35639597 - MGP_C3HHeJ_P0044050 Gtf2e1 protein_coding protein_coding MGP_C3HHeJ_T0044051.1 MGP_C3HHeJ_G0022530.1 mouse_genomes_project 16 35632320 35639584 - Gtf2e1 protein_coding retained_intron MGP_C3HHeJ_T0100319.1 MGP_C3HHeJ_G0038513.1 mouse_genomes_project 16 75490011 75490142 - Gm22268 snoRNA snoRNA MGP_C3HHeJ_T0043973.1 MGP_C3HHeJ_G0022513.1 mouse_genomes_project 16 34215820 34219696 + MGP_C3HHeJ_P0043973 Gm5483 protein_coding protein_coding MGP_C3HHeJ_T0013051.1 MGP_C3HHeJ_G0011155.1 mouse_genomes_project 16 75121425 75122338 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017282.1 MGP_C3HHeJ_G0015085.1 mouse_genomes_project 16 65669348 65676853 + 1700010K23Rik processed_transcript processed_transcript MGP_C3HHeJ_T0044678.1 MGP_C3HHeJ_G0022719.1 mouse_genomes_project 16 88470264 88471237 - MGP_C3HHeJ_P0044678 Krtap26-1 protein_coding protein_coding MGP_C3HHeJ_T0043784.1 MGP_C3HHeJ_G0022468.1 mouse_genomes_project 16 30145302 30208296 + MGP_C3HHeJ_P0043784 Ubxn7 protein_coding protein_coding MGP_C3HHeJ_T0100309.1 MGP_C3HHeJ_G0038503.1 mouse_genomes_project 16 53166625 53166750 + Gm23180 snoRNA snoRNA MGP_C3HHeJ_T0042835.1 MGP_C3HHeJ_G0022245.1 mouse_genomes_project 16 7603118 7603838 - MGP_C3HHeJ_P0042835 Tnp2 protein_coding protein_coding MGP_C3HHeJ_T0043947.1 MGP_C3HHeJ_G0022505.1 mouse_genomes_project 16 33887264 33899786 - MGP_C3HHeJ_P0043947 Dtx3l protein_coding protein_coding MGP_C3HHeJ_T0043948.1 MGP_C3HHeJ_G0022505.1 mouse_genomes_project 16 33892509 33899786 - MGP_C3HHeJ_P0043948 Dtx3l protein_coding protein_coding MGP_C3HHeJ_T0097873.1 MGP_C3HHeJ_G0036085.1 mouse_genomes_project 16 88788707 88788943 - pseudogene pseudogene MGP_C3HHeJ_T0042876.1 MGP_C3HHeJ_G0022255.1 mouse_genomes_project 16 8035147 8045493 - MGP_C3HHeJ_P0042876 Rsl1d1 protein_coding protein_coding MGP_C3HHeJ_T0042877.1 MGP_C3HHeJ_G0022255.1 mouse_genomes_project 16 8035682 8037173 - Rsl1d1 protein_coding retained_intron MGP_C3HHeJ_T0042878.1 MGP_C3HHeJ_G0022255.1 mouse_genomes_project 16 8038623 8045426 - Rsl1d1 protein_coding retained_intron MGP_C3HHeJ_T0013027.1 MGP_C3HHeJ_G0011131.1 mouse_genomes_project 16 36958480 36958874 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044707.1 MGP_C3HHeJ_G0022744.1 mouse_genomes_project 16 88983987 88984452 + MGP_C3HHeJ_P0044707 Gm10061 protein_coding protein_coding MGP_C3HHeJ_T0100288.1 MGP_C3HHeJ_G0038482.1 mouse_genomes_project 16 20640899 20641024 + Gm24201 snoRNA snoRNA MGP_C3HHeJ_T0045040.1 MGP_C3HHeJ_G0022813.1 mouse_genomes_project 16 96291431 96324881 - MGP_C3HHeJ_P0045040 Lca5l protein_coding protein_coding MGP_C3HHeJ_T0045041.1 MGP_C3HHeJ_G0022813.1 mouse_genomes_project 16 96291930 96311410 - MGP_C3HHeJ_P0045041 Lca5l protein_coding unknown_likely_coding MGP_C3HHeJ_T0045042.1 MGP_C3HHeJ_G0022813.1 mouse_genomes_project 16 96292092 96324888 - MGP_C3HHeJ_P0045042 Lca5l protein_coding protein_coding MGP_C3HHeJ_T0045043.1 MGP_C3HHeJ_G0022813.1 mouse_genomes_project 16 96293523 96324881 - Lca5l protein_coding retained_intron MGP_C3HHeJ_T0045044.1 MGP_C3HHeJ_G0022813.1 mouse_genomes_project 16 96313880 96324888 - Lca5l protein_coding processed_transcript MGP_C3HHeJ_T0043498.1 MGP_C3HHeJ_G0022388.1 mouse_genomes_project 16 18393178 18394844 - MGP_C3HHeJ_P0043498 Teddm3 protein_coding protein_coding MGP_C3HHeJ_T0043835.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30704713 30719171 + Fyttd1 protein_coding processed_transcript MGP_C3HHeJ_T0043836.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30704994 30736618 + MGP_C3HHeJ_P0043836 Fyttd1 protein_coding protein_coding MGP_C3HHeJ_T0043837.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30704997 30736706 + MGP_C3HHeJ_P0043837 Fyttd1 protein_coding protein_coding MGP_C3HHeJ_T0043838.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30705026 30722998 + Fyttd1 protein_coding retained_intron MGP_C3HHeJ_T0043839.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30705026 30724998 + Fyttd1 protein_coding processed_transcript MGP_C3HHeJ_T0043840.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30705064 30726599 + Fyttd1 protein_coding retained_intron MGP_C3HHeJ_T0043841.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30710093 30733375 + MGP_C3HHeJ_P0043841 Fyttd1 protein_coding protein_coding MGP_C3HHeJ_T0043842.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30722832 30733524 + Fyttd1 protein_coding processed_transcript MGP_C3HHeJ_T0043843.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30726497 30733447 + Fyttd1 protein_coding retained_intron MGP_C3HHeJ_T0043844.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30727971 30733383 + Fyttd1 protein_coding retained_intron MGP_C3HHeJ_T0043845.1 MGP_C3HHeJ_G0022480.1 mouse_genomes_project 16 30729846 30733349 + Fyttd1 protein_coding retained_intron MGP_C3HHeJ_T0042589.1 MGP_C3HHeJ_G0022187.1 mouse_genomes_project 16 379973 418443 + MGP_C3HHeJ_P0042589 Gm20695 protein_coding protein_coding MGP_C3HHeJ_T0042602.1 MGP_C3HHeJ_G0022187.1 mouse_genomes_project 16 396356 418412 + Gm20695 protein_coding processed_transcript MGP_C3HHeJ_T0006749.1 MGP_C3HHeJ_G0005560.1 mouse_genomes_project 16 18626970 18678412 - lincRNA lincRNA MGP_C3HHeJ_T0044528.1 MGP_C3HHeJ_G0022668.1 mouse_genomes_project 16 61736182 61745846 + MGP_C3HHeJ_P0044528 Stx19 protein_coding protein_coding MGP_C3HHeJ_T0044092.1 MGP_C3HHeJ_G0022544.1 mouse_genomes_project 16 36525313 36563386 - MGP_C3HHeJ_P0044092 Pla1a protein_coding protein_coding MGP_C3HHeJ_T0044329.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47365619 47391105 + MGP_C3HHeJ_P0044329 C330027C09Rik protein_coding protein_coding MGP_C3HHeJ_T0044330.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47365622 47391105 + MGP_C3HHeJ_P0044330 C330027C09Rik protein_coding protein_coding MGP_C3HHeJ_T0044331.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47365657 47372485 + MGP_C3HHeJ_P0044331 C330027C09Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044332.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47372263 47373467 + C330027C09Rik protein_coding retained_intron MGP_C3HHeJ_T0044333.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47379796 47391051 + C330027C09Rik protein_coding retained_intron MGP_C3HHeJ_T0044334.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47381829 47384712 + C330027C09Rik protein_coding retained_intron MGP_C3HHeJ_T0044335.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47384716 47385772 + C330027C09Rik protein_coding retained_intron MGP_C3HHeJ_T0044336.1 MGP_C3HHeJ_G0022601.1 mouse_genomes_project 16 47387259 47391109 + C330027C09Rik protein_coding retained_intron MGP_C3HHeJ_T0043544.1 MGP_C3HHeJ_G0022402.1 mouse_genomes_project 16 20265188 20319484 - MGP_C3HHeJ_P0043544 Tbccd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043450.1 MGP_C3HHeJ_G0022381.1 mouse_genomes_project 16 17939048 17957851 + MGP_C3HHeJ_P0043450 Psmd2 protein_coding protein_coding MGP_C3HHeJ_T0043451.1 MGP_C3HHeJ_G0022381.1 mouse_genomes_project 16 17939100 17957851 + MGP_C3HHeJ_P0043451 Psmd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043452.1 MGP_C3HHeJ_G0022381.1 mouse_genomes_project 16 17939112 17940151 + Psmd2 protein_coding processed_transcript MGP_C3HHeJ_T0043453.1 MGP_C3HHeJ_G0022381.1 mouse_genomes_project 16 17951617 17952327 + Psmd2 protein_coding processed_transcript MGP_C3HHeJ_T0043454.1 MGP_C3HHeJ_G0022381.1 mouse_genomes_project 16 17951962 17952979 + Psmd2 protein_coding processed_transcript MGP_C3HHeJ_T0043455.1 MGP_C3HHeJ_G0022381.1 mouse_genomes_project 16 17952029 17954720 + Psmd2 protein_coding processed_transcript MGP_C3HHeJ_T0003608.1 MGP_C3HHeJ_G0003264.1 mouse_genomes_project 16 36432351 36434756 + Maats1os antisense antisense MGP_C3HHeJ_T0045079.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97990418 98054704 - MGP_C3HHeJ_P0045079 Prdm15 protein_coding protein_coding MGP_C3HHeJ_T0045080.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97990471 98055327 - MGP_C3HHeJ_P0045080 Prdm15 protein_coding protein_coding MGP_C3HHeJ_T0045081.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97990828 98055260 - MGP_C3HHeJ_P0045081 Prdm15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045082.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97991281 97999273 - Prdm15 protein_coding retained_intron MGP_C3HHeJ_T0045083.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97993129 98043435 - MGP_C3HHeJ_P0045083 Prdm15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045084.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97993467 98003989 - Prdm15 protein_coding processed_transcript MGP_C3HHeJ_T0045085.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 97994692 97996890 - Prdm15 protein_coding retained_intron MGP_C3HHeJ_T0045086.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 98022269 98033262 - Prdm15 protein_coding retained_intron MGP_C3HHeJ_T0045087.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 98038841 98043443 - Prdm15 protein_coding retained_intron MGP_C3HHeJ_T0045088.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 98039259 98052360 - MGP_C3HHeJ_P0045088 Prdm15 protein_coding protein_coding MGP_C3HHeJ_T0045089.1 MGP_C3HHeJ_G0022825.1 mouse_genomes_project 16 98041156 98054704 - MGP_C3HHeJ_P0045089 Prdm15 protein_coding protein_coding MGP_C3HHeJ_T0010068.1 MGP_C3HHeJ_G0008201.1 mouse_genomes_project 16 73261982 73262080 + Gm24272 miRNA miRNA MGP_C3HHeJ_T0042969.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11340123 11460740 + MGP_C3HHeJ_P0042969 Abcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042970.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11340123 11460740 + MGP_C3HHeJ_P0042970 Abcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042971.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11340123 11460740 + MGP_C3HHeJ_P0042971 Abcc1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042972.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11340125 11462583 + MGP_C3HHeJ_P0042972 Abcc1 protein_coding protein_coding MGP_C3HHeJ_T0042973.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11340141 11385163 + MGP_C3HHeJ_P0042973 Abcc1 protein_coding protein_coding MGP_C3HHeJ_T0042974.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11340146 11393630 + MGP_C3HHeJ_P0042974 Abcc1 protein_coding protein_coding MGP_C3HHeJ_T0042975.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11345281 11380202 + MGP_C3HHeJ_P0042975 Abcc1 protein_coding protein_coding MGP_C3HHeJ_T0042976.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11382711 11383086 + Abcc1 protein_coding processed_transcript MGP_C3HHeJ_T0042977.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11390927 11409312 + Abcc1 protein_coding retained_intron MGP_C3HHeJ_T0042978.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11447894 11455135 + Abcc1 protein_coding retained_intron MGP_C3HHeJ_T0042979.1 MGP_C3HHeJ_G0022278.1 mouse_genomes_project 16 11447899 11460881 + Abcc1 protein_coding retained_intron MGP_C3HHeJ_T0013021.1 MGP_C3HHeJ_G0011125.1 mouse_genomes_project 16 34852383 34853774 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043992.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34827997 34859134 - MGP_C3HHeJ_P0043992 Slc15a2 protein_coding protein_coding MGP_C3HHeJ_T0043993.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34829597 34858992 - MGP_C3HHeJ_P0043993 Slc15a2 protein_coding protein_coding MGP_C3HHeJ_T0043994.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34829597 34858964 - MGP_C3HHeJ_P0043994 Slc15a2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043995.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34830135 34832578 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0043996.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34832277 34833227 - Slc15a2 protein_coding processed_transcript MGP_C3HHeJ_T0043997.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34833717 34834524 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0043998.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34834941 34840674 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0043999.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34834988 34840484 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0044000.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34839018 34840400 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0044001.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34844859 34859112 - MGP_C3HHeJ_P0044001 Slc15a2 protein_coding protein_coding MGP_C3HHeJ_T0044002.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34844862 34859096 - MGP_C3HHeJ_P0044002 Slc15a2 protein_coding protein_coding MGP_C3HHeJ_T0044003.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34845056 34846264 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0044004.1 MGP_C3HHeJ_G0022522.1 mouse_genomes_project 16 34855557 34856637 - Slc15a2 protein_coding retained_intron MGP_C3HHeJ_T0012979.1 MGP_C3HHeJ_G0011083.1 mouse_genomes_project 16 5291201 5291742 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097869.1 MGP_C3HHeJ_G0036081.1 mouse_genomes_project 16 48286256 48288673 + pseudogene pseudogene MGP_C3HHeJ_T0044494.1 MGP_C3HHeJ_G0022654.1 mouse_genomes_project 16 57933274 57934381 - MGP_C3HHeJ_P0044494 Olfr199 protein_coding protein_coding MGP_C3HHeJ_T0043208.1 MGP_C3HHeJ_G0022323.1 mouse_genomes_project 16 14975419 14978508 - MGP_C3HHeJ_P0043208 Car15 protein_coding protein_coding MGP_C3HHeJ_T0010078.1 MGP_C3HHeJ_G0008211.1 mouse_genomes_project 16 91892240 91892318 - Gm27773 miRNA miRNA MGP_C3HHeJ_T0099058.1 MGP_C3HHeJ_G0037252.1 mouse_genomes_project 16 54172191 54172298 - Gm23003 snRNA snRNA MGP_C3HHeJ_T0006756.1 MGP_C3HHeJ_G0005565.1 mouse_genomes_project 16 22653763 22663167 + A230028O05Rik lincRNA lincRNA MGP_C3HHeJ_T0012999.1 MGP_C3HHeJ_G0011103.1 mouse_genomes_project 16 16268895 16271334 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101767.1 MGP_C3HHeJ_G0039732.1 mouse_genomes_project 16 5445 5885 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0000019.1 MGP_C3HHeJ_G0000014.1 mouse_genomes_project 16 16448055 16448513 - MGP_C3HHeJ_P0000019 Iglc2 IG_C_gene IG_C_gene MGP_C3HHeJ_T0000020.1 MGP_C3HHeJ_G0000014.1 mouse_genomes_project 16 16448060 16450011 - MGP_C3HHeJ_P0000020 Iglc2 IG_C_gene IG_C_gene MGP_C3HHeJ_T0044943.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420494 94520303 + MGP_C3HHeJ_P0044943 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044944.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420615 94493734 + MGP_C3HHeJ_P0044944 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044945.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420619 94454340 + Ttc3 protein_coding retained_intron MGP_C3HHeJ_T0044946.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420619 94485412 + MGP_C3HHeJ_P0044946 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044947.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420622 94493739 + MGP_C3HHeJ_P0044947 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044948.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420625 94469221 + MGP_C3HHeJ_P0044948 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044949.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420626 94446221 + MGP_C3HHeJ_P0044949 Ttc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044950.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420627 94466888 + Ttc3 protein_coding processed_transcript MGP_C3HHeJ_T0044951.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420627 94469149 + MGP_C3HHeJ_P0044951 Ttc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044952.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420627 94472824 + MGP_C3HHeJ_P0044952 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044953.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420633 94493746 + MGP_C3HHeJ_P0044953 Ttc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044954.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420643 94460238 + Ttc3 protein_coding processed_transcript MGP_C3HHeJ_T0044955.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420643 94440140 + MGP_C3HHeJ_P0044955 Ttc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044956.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420643 94437246 + MGP_C3HHeJ_P0044956 Ttc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044957.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420643 94493736 + MGP_C3HHeJ_P0044957 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044958.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420656 94466486 + MGP_C3HHeJ_P0044958 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044959.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420657 94493746 + MGP_C3HHeJ_P0044959 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044960.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420657 94493746 + MGP_C3HHeJ_P0044960 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044961.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420672 94478393 + MGP_C3HHeJ_P0044961 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044962.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420673 94461368 + MGP_C3HHeJ_P0044962 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044963.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420673 94453876 + MGP_C3HHeJ_P0044963 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044964.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420674 94462637 + Ttc3 protein_coding processed_transcript MGP_C3HHeJ_T0044965.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420674 94446465 + MGP_C3HHeJ_P0044965 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044966.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94420699 94470808 + MGP_C3HHeJ_P0044966 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044967.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94475675 94484221 + MGP_C3HHeJ_P0044967 Ttc3 protein_coding protein_coding MGP_C3HHeJ_T0044968.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94491159 94499812 + Ttc3 protein_coding retained_intron MGP_C3HHeJ_T0044969.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94502192 94511144 + MGP_C3HHeJ_P0044969 Ttc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044970.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94508463 94519075 + Ttc3 protein_coding retained_intron MGP_C3HHeJ_T0044971.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94516221 94519966 + Ttc3 protein_coding retained_intron MGP_C3HHeJ_T0044972.1 MGP_C3HHeJ_G0022802.1 mouse_genomes_project 16 94517582 94519298 + Ttc3 protein_coding retained_intron MGP_C3HHeJ_T0043785.1 MGP_C3HHeJ_G0022469.1 mouse_genomes_project 16 30217552 30225060 + MGP_C3HHeJ_P0043785 Tm4sf19 protein_coding protein_coding MGP_C3HHeJ_T0011309.1 MGP_C3HHeJ_G0009442.1 mouse_genomes_project 16 5109765 5110054 - Gm25782 misc_RNA misc_RNA MGP_C3HHeJ_T0010041.1 MGP_C3HHeJ_G0008174.1 mouse_genomes_project 16 17891828 17891913 + Mir1224 miRNA miRNA MGP_C3HHeJ_T0043620.1 MGP_C3HHeJ_G0022425.1 mouse_genomes_project 16 24097448 24117102 + MGP_C3HHeJ_P0043620 Cldn16 protein_coding protein_coding MGP_C3HHeJ_T0043621.1 MGP_C3HHeJ_G0022425.1 mouse_genomes_project 16 24097569 24117100 + MGP_C3HHeJ_P0043621 Cldn16 protein_coding protein_coding MGP_C3HHeJ_T0010040.1 MGP_C3HHeJ_G0008173.1 mouse_genomes_project 16 17152620 17152722 - Gm27883 miRNA miRNA MGP_C3HHeJ_T0101769.1 MGP_C3HHeJ_G0039734.1 mouse_genomes_project 16 102380 103320 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010022.1 MGP_C3HHeJ_G0008155.1 mouse_genomes_project 16 1776940 1777026 - Mir6364 miRNA miRNA MGP_C3HHeJ_T0044534.1 MGP_C3HHeJ_G0022671.1 mouse_genomes_project 16 63418150 63419486 - MGP_C3HHeJ_P0044534 Csnka2ip protein_coding protein_coding MGP_C3HHeJ_T0043600.1 MGP_C3HHeJ_G0022419.1 mouse_genomes_project 16 21539806 21563794 - MGP_C3HHeJ_P0043600 Bcl6 protein_coding protein_coding MGP_C3HHeJ_T0043601.1 MGP_C3HHeJ_G0022419.1 mouse_genomes_project 16 21542664 21547339 - Bcl6 protein_coding retained_intron MGP_C3HHeJ_T0017306.1 MGP_C3HHeJ_G0015092.1 mouse_genomes_project 16 91628181 91655718 + Gm10785 processed_transcript processed_transcript MGP_C3HHeJ_T0044806.1 MGP_C3HHeJ_G0022775.1 mouse_genomes_project 16 91551772 91556515 - MGP_C3HHeJ_P0044806 Dnajc28 protein_coding protein_coding MGP_C3HHeJ_T0044807.1 MGP_C3HHeJ_G0022775.1 mouse_genomes_project 16 91553241 91556510 - MGP_C3HHeJ_P0044807 Dnajc28 protein_coding protein_coding MGP_C3HHeJ_T0044808.1 MGP_C3HHeJ_G0022775.1 mouse_genomes_project 16 91554352 91556507 - MGP_C3HHeJ_P0044808 Dnajc28 protein_coding protein_coding MGP_C3HHeJ_T0044809.1 MGP_C3HHeJ_G0022775.1 mouse_genomes_project 16 91554617 91556542 - MGP_C3HHeJ_P0044809 Dnajc28 protein_coding protein_coding MGP_C3HHeJ_T0010066.1 MGP_C3HHeJ_G0008199.1 mouse_genomes_project 16 61730096 61730164 + Gm25986 miRNA miRNA MGP_C3HHeJ_T0043531.1 MGP_C3HHeJ_G0022398.1 mouse_genomes_project 16 19675097 19698078 - MGP_C3HHeJ_P0043531 Tra2b protein_coding protein_coding MGP_C3HHeJ_T0043532.1 MGP_C3HHeJ_G0022398.1 mouse_genomes_project 16 19677705 19684439 - Tra2b protein_coding retained_intron MGP_C3HHeJ_T0043533.1 MGP_C3HHeJ_G0022398.1 mouse_genomes_project 16 19686306 19691405 - Tra2b protein_coding processed_transcript MGP_C3HHeJ_T0043534.1 MGP_C3HHeJ_G0022398.1 mouse_genomes_project 16 19689846 19697991 - Tra2b protein_coding retained_intron MGP_C3HHeJ_T0044892.1 MGP_C3HHeJ_G0022789.1 mouse_genomes_project 16 92452125 92494822 + MGP_C3HHeJ_P0044892 Clic6 protein_coding protein_coding MGP_C3HHeJ_T0044893.1 MGP_C3HHeJ_G0022789.1 mouse_genomes_project 16 92464440 92507955 + MGP_C3HHeJ_P0044893 Clic6 protein_coding protein_coding MGP_C3HHeJ_T0100293.1 MGP_C3HHeJ_G0038487.1 mouse_genomes_project 16 28638685 28638820 + Gm25375 snoRNA snoRNA MGP_C3HHeJ_T0043857.1 MGP_C3HHeJ_G0022482.1 mouse_genomes_project 16 30851200 30899689 - MGP_C3HHeJ_P0043857 Iqcg protein_coding protein_coding MGP_C3HHeJ_T0043858.1 MGP_C3HHeJ_G0022482.1 mouse_genomes_project 16 30852765 30860381 - Iqcg protein_coding processed_transcript MGP_C3HHeJ_T0043859.1 MGP_C3HHeJ_G0022482.1 mouse_genomes_project 16 30877668 30899717 - MGP_C3HHeJ_P0043859 Iqcg protein_coding protein_coding MGP_C3HHeJ_T0043860.1 MGP_C3HHeJ_G0022482.1 mouse_genomes_project 16 30887862 30899684 - Iqcg protein_coding retained_intron MGP_C3HHeJ_T0044888.1 MGP_C3HHeJ_G0022787.1 mouse_genomes_project 16 92305237 92318829 - MGP_C3HHeJ_P0044888 Kcne1 protein_coding protein_coding MGP_C3HHeJ_T0044889.1 MGP_C3HHeJ_G0022787.1 mouse_genomes_project 16 92307796 92318235 - MGP_C3HHeJ_P0044889 Kcne1 protein_coding protein_coding MGP_C3HHeJ_T0012974.1 MGP_C3HHeJ_G0011078.1 mouse_genomes_project 16 425320 425633 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003598.1 MGP_C3HHeJ_G0003258.1 mouse_genomes_project 16 31676409 31687078 - Gm15657 antisense antisense MGP_C3HHeJ_T0003599.1 MGP_C3HHeJ_G0003258.1 mouse_genomes_project 16 31685371 31687076 - Gm15657 antisense antisense MGP_C3HHeJ_T0003600.1 MGP_C3HHeJ_G0003258.1 mouse_genomes_project 16 31685702 31687854 - Gm15657 antisense antisense MGP_C3HHeJ_T0042985.1 MGP_C3HHeJ_G0022282.1 mouse_genomes_project 16 11877514 11895205 + MGP_C3HHeJ_P0042985 Efcab1 protein_coding protein_coding MGP_C3HHeJ_T0006757.1 MGP_C3HHeJ_G0005566.1 mouse_genomes_project 16 27503290 27531775 + Gm26834 lincRNA lincRNA MGP_C3HHeJ_T0010034.1 MGP_C3HHeJ_G0008167.1 mouse_genomes_project 16 15347776 15347858 - Mir6366 miRNA miRNA MGP_C3HHeJ_T0044644.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223271 87253216 + MGP_C3HHeJ_P0044644 Usp16 protein_coding protein_coding MGP_C3HHeJ_T0044645.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223547 87253009 + MGP_C3HHeJ_P0044645 Usp16 protein_coding protein_coding MGP_C3HHeJ_T0044646.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223553 87230629 + MGP_C3HHeJ_P0044646 Usp16 protein_coding protein_coding MGP_C3HHeJ_T0044647.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223595 87230147 + Usp16 protein_coding retained_intron MGP_C3HHeJ_T0044648.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223611 87239924 + Usp16 protein_coding retained_intron MGP_C3HHeJ_T0044649.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223617 87234910 + Usp16 protein_coding processed_transcript MGP_C3HHeJ_T0044650.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87223626 87253009 + MGP_C3HHeJ_P0044650 Usp16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044651.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87241753 87248828 + Usp16 protein_coding retained_intron MGP_C3HHeJ_T0044652.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87241988 87248122 + Usp16 protein_coding retained_intron MGP_C3HHeJ_T0044653.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87250352 87252879 + Usp16 protein_coding retained_intron MGP_C3HHeJ_T0044654.1 MGP_C3HHeJ_G0022710.1 mouse_genomes_project 16 87252549 87252997 + Usp16 protein_coding retained_intron MGP_C3HHeJ_T0042607.1 MGP_C3HHeJ_G0022189.1 mouse_genomes_project 16 407726 422749 + MGP_C3HHeJ_P0042607 Cluap1 protein_coding protein_coding MGP_C3HHeJ_T0042608.1 MGP_C3HHeJ_G0022189.1 mouse_genomes_project 16 407750 439834 + MGP_C3HHeJ_P0042608 Cluap1 protein_coding protein_coding MGP_C3HHeJ_T0042609.1 MGP_C3HHeJ_G0022189.1 mouse_genomes_project 16 407964 412498 + Cluap1 protein_coding retained_intron MGP_C3HHeJ_T0042610.1 MGP_C3HHeJ_G0022189.1 mouse_genomes_project 16 408001 428744 + MGP_C3HHeJ_P0042610 Cluap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042611.1 MGP_C3HHeJ_G0022189.1 mouse_genomes_project 16 408031 422805 + MGP_C3HHeJ_P0042611 Cluap1 protein_coding protein_coding MGP_C3HHeJ_T0044733.1 MGP_C3HHeJ_G0022756.1 mouse_genomes_project 16 90073538 90132092 - MGP_C3HHeJ_P0044733 Scaf4 protein_coding protein_coding MGP_C3HHeJ_T0044734.1 MGP_C3HHeJ_G0022756.1 mouse_genomes_project 16 90073737 90132209 - MGP_C3HHeJ_P0044734 Scaf4 protein_coding protein_coding MGP_C3HHeJ_T0010053.1 MGP_C3HHeJ_G0008186.1 mouse_genomes_project 16 38566314 38566416 - Gm27887 miRNA miRNA MGP_C3HHeJ_T0003612.1 MGP_C3HHeJ_G0003268.1 mouse_genomes_project 16 44095240 44096063 + Gm15591 antisense antisense MGP_C3HHeJ_T0044548.1 MGP_C3HHeJ_G0022679.1 mouse_genomes_project 16 65667651 66699897 - MGP_C3HHeJ_P0044548 Cadm2 protein_coding protein_coding MGP_C3HHeJ_T0044549.1 MGP_C3HHeJ_G0022679.1 mouse_genomes_project 16 65673971 66699812 - MGP_C3HHeJ_P0044549 Cadm2 protein_coding protein_coding MGP_C3HHeJ_T0044550.1 MGP_C3HHeJ_G0022679.1 mouse_genomes_project 16 65674416 66699897 - MGP_C3HHeJ_P0044550 Cadm2 protein_coding protein_coding MGP_C3HHeJ_T0044551.1 MGP_C3HHeJ_G0022679.1 mouse_genomes_project 16 65675319 65990363 - MGP_C3HHeJ_P0044551 Cadm2 protein_coding protein_coding MGP_C3HHeJ_T0044552.1 MGP_C3HHeJ_G0022679.1 mouse_genomes_project 16 65807917 66699482 - MGP_C3HHeJ_P0044552 Cadm2 protein_coding protein_coding MGP_C3HHeJ_T0044553.1 MGP_C3HHeJ_G0022679.1 mouse_genomes_project 16 65833431 65957313 - Cadm2 protein_coding processed_transcript MGP_C3HHeJ_T0013043.1 MGP_C3HHeJ_G0011147.1 mouse_genomes_project 16 59204870 59205273 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044680.1 MGP_C3HHeJ_G0022721.1 mouse_genomes_project 16 88532248 88533042 - MGP_C3HHeJ_P0044680 2310061N02Rik protein_coding protein_coding MGP_C3HHeJ_T0044026.1 MGP_C3HHeJ_G0022526.1 mouse_genomes_project 16 35016235 35045937 + MGP_C3HHeJ_P0044026 Hcls1 protein_coding protein_coding MGP_C3HHeJ_T0044027.1 MGP_C3HHeJ_G0022526.1 mouse_genomes_project 16 35018539 35044255 + MGP_C3HHeJ_P0044027 Hcls1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044028.1 MGP_C3HHeJ_G0022526.1 mouse_genomes_project 16 35037475 35039358 + Hcls1 protein_coding retained_intron MGP_C3HHeJ_T0003597.1 MGP_C3HHeJ_G0003257.1 mouse_genomes_project 16 31657821 31677166 - Gm15658 antisense antisense MGP_C3HHeJ_T0044412.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55303435 55330553 - MGP_C3HHeJ_P0044412 Tfg protein_coding protein_coding MGP_C3HHeJ_T0044413.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55303980 55318798 - MGP_C3HHeJ_P0044413 Tfg protein_coding protein_coding MGP_C3HHeJ_T0044414.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55304071 55317567 - MGP_C3HHeJ_P0044414 Tfg protein_coding protein_coding MGP_C3HHeJ_T0044415.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55316599 55330414 - MGP_C3HHeJ_P0044415 Tfg protein_coding protein_coding MGP_C3HHeJ_T0044416.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55317552 55326079 - MGP_C3HHeJ_P0044416 Tfg protein_coding protein_coding MGP_C3HHeJ_T0044417.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55317634 55330463 - MGP_C3HHeJ_P0044417 Tfg protein_coding protein_coding MGP_C3HHeJ_T0044418.1 MGP_C3HHeJ_G0022620.1 mouse_genomes_project 16 55318714 55330285 - MGP_C3HHeJ_P0044418 Tfg protein_coding protein_coding MGP_C3HHeJ_T0100302.1 MGP_C3HHeJ_G0038496.1 mouse_genomes_project 16 42132354 42132483 - Gm26074 snoRNA snoRNA MGP_C3HHeJ_T0043156.1 MGP_C3HHeJ_G0022316.1 mouse_genomes_project 16 14689917 14700042 + MGP_C3HHeJ_P0043156 P2rx6 protein_coding protein_coding MGP_C3HHeJ_T0043157.1 MGP_C3HHeJ_G0022316.1 mouse_genomes_project 16 14689917 14699131 + MGP_C3HHeJ_P0043157 P2rx6 protein_coding protein_coding MGP_C3HHeJ_T0043158.1 MGP_C3HHeJ_G0022316.1 mouse_genomes_project 16 14689965 14705831 + MGP_C3HHeJ_P0043158 P2rx6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100314.1 MGP_C3HHeJ_G0038508.1 mouse_genomes_project 16 64158180 64158310 - Gm22429 snoRNA snoRNA MGP_C3HHeJ_T0100312.1 MGP_C3HHeJ_G0038506.1 mouse_genomes_project 16 57418999 57419118 - Gm26019 snoRNA snoRNA MGP_C3HHeJ_T0003586.1 MGP_C3HHeJ_G0003247.1 mouse_genomes_project 16 14226450 14227259 + Gm15646 antisense antisense MGP_C3HHeJ_T0043792.1 MGP_C3HHeJ_G0022472.1 mouse_genomes_project 16 30296274 30308974 - MGP_C3HHeJ_P0043792 Slc51a protein_coding protein_coding MGP_C3HHeJ_T0044781.1 MGP_C3HHeJ_G0022766.1 mouse_genomes_project 16 91072893 91076104 - MGP_C3HHeJ_P0044781 Gm9881 protein_coding protein_coding MGP_C3HHeJ_T0042798.1 MGP_C3HHeJ_G0022235.1 mouse_genomes_project 16 6921282 6926402 + MGP_C3HHeJ_P0042798 Rpl39l protein_coding protein_coding MGP_C3HHeJ_T0042799.1 MGP_C3HHeJ_G0022235.1 mouse_genomes_project 16 6921284 6926683 + MGP_C3HHeJ_P0042799 Rpl39l protein_coding protein_coding MGP_C3HHeJ_T0042690.1 MGP_C3HHeJ_G0022205.1 mouse_genomes_project 16 1266654 1300225 + MGP_C3HHeJ_P0042690 Hmox2 protein_coding protein_coding MGP_C3HHeJ_T0042691.1 MGP_C3HHeJ_G0022205.1 mouse_genomes_project 16 1266656 1302119 + MGP_C3HHeJ_P0042691 Hmox2 protein_coding protein_coding MGP_C3HHeJ_T0042692.1 MGP_C3HHeJ_G0022205.1 mouse_genomes_project 16 1284704 1301626 + MGP_C3HHeJ_P0042692 Hmox2 protein_coding protein_coding MGP_C3HHeJ_T0042694.1 MGP_C3HHeJ_G0022205.1 mouse_genomes_project 16 1292167 1301622 + MGP_C3HHeJ_P0042694 Hmox2 protein_coding protein_coding MGP_C3HHeJ_T0042695.1 MGP_C3HHeJ_G0022205.1 mouse_genomes_project 16 1292173 1300467 + MGP_C3HHeJ_P0042695 Hmox2 protein_coding protein_coding MGP_C3HHeJ_T0012993.1 MGP_C3HHeJ_G0011097.1 mouse_genomes_project 16 13391288 13392262 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0043199.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14893435 14906329 + MGP_C3HHeJ_P0043199 Klhl22 protein_coding protein_coding MGP_C3HHeJ_T0043200.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14893438 14928462 + MGP_C3HHeJ_P0043200 Klhl22 protein_coding protein_coding MGP_C3HHeJ_T0043201.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14893455 14906371 + MGP_C3HHeJ_P0043201 Klhl22 protein_coding protein_coding MGP_C3HHeJ_T0043202.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14893480 14913642 + Klhl22 protein_coding retained_intron MGP_C3HHeJ_T0043203.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14893488 14928462 + MGP_C3HHeJ_P0043203 Klhl22 protein_coding protein_coding MGP_C3HHeJ_T0043204.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14894172 14906322 + MGP_C3HHeJ_P0043204 Klhl22 protein_coding protein_coding MGP_C3HHeJ_T0043205.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14896608 14928464 + MGP_C3HHeJ_P0043205 Klhl22 protein_coding protein_coding MGP_C3HHeJ_T0043206.1 MGP_C3HHeJ_G0022321.1 mouse_genomes_project 16 14897887 14906346 + Klhl22 protein_coding retained_intron MGP_C3HHeJ_T0100303.1 MGP_C3HHeJ_G0038497.1 mouse_genomes_project 16 42184132 42184265 - Gm25989 snoRNA snoRNA MGP_C3HHeJ_T0044420.1 MGP_C3HHeJ_G0022622.1 mouse_genomes_project 16 55429368 55523085 - MGP_C3HHeJ_P0044420 Tmem45a protein_coding protein_coding MGP_C3HHeJ_T0044421.1 MGP_C3HHeJ_G0022622.1 mouse_genomes_project 16 55430698 55435049 - Tmem45a protein_coding processed_transcript MGP_C3HHeJ_T0044422.1 MGP_C3HHeJ_G0022622.1 mouse_genomes_project 16 55452265 55460234 - MGP_C3HHeJ_P0044422 Tmem45a protein_coding protein_coding MGP_C3HHeJ_T0044813.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91585636 91618443 + MGP_C3HHeJ_P0044813 Son protein_coding protein_coding MGP_C3HHeJ_T0044814.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91586009 91618431 + MGP_C3HHeJ_P0044814 Son protein_coding protein_coding MGP_C3HHeJ_T0044815.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91586009 91618431 + MGP_C3HHeJ_P0044815 Son protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044816.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91586009 91603763 + MGP_C3HHeJ_P0044816 Son protein_coding protein_coding MGP_C3HHeJ_T0044817.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91586010 91602088 + MGP_C3HHeJ_P0044817 Son protein_coding protein_coding MGP_C3HHeJ_T0044818.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91586015 91618457 + MGP_C3HHeJ_P0044818 Son protein_coding protein_coding MGP_C3HHeJ_T0044819.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91598063 91618428 + MGP_C3HHeJ_P0044819 Son protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044820.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91602274 91611373 + Son protein_coding processed_transcript MGP_C3HHeJ_T0044821.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91610581 91611942 + Son protein_coding processed_transcript MGP_C3HHeJ_T0044822.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91612672 91616848 + Son protein_coding processed_transcript MGP_C3HHeJ_T0044823.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91612902 91617356 + Son protein_coding processed_transcript MGP_C3HHeJ_T0044824.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91613338 91617737 + Son protein_coding processed_transcript MGP_C3HHeJ_T0044825.1 MGP_C3HHeJ_G0022777.1 mouse_genomes_project 16 91614163 91616670 + Son protein_coding retained_intron MGP_C3HHeJ_T0017281.1 MGP_C3HHeJ_G0015084.1 mouse_genomes_project 16 58313562 58357631 - Crybg3 processed_transcript processed_transcript MGP_C3HHeJ_T0043966.1 MGP_C3HHeJ_G0022509.1 mouse_genomes_project 16 34011511 34039208 - MGP_C3HHeJ_P0043966 Fam162a protein_coding protein_coding MGP_C3HHeJ_T0013059.1 MGP_C3HHeJ_G0011163.1 mouse_genomes_project 16 91471178 91472057 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003623.1 MGP_C3HHeJ_G0003276.1 mouse_genomes_project 16 91871615 91875813 + Gm15976 antisense antisense MGP_C3HHeJ_T0011313.1 MGP_C3HHeJ_G0009446.1 mouse_genomes_project 16 34575842 34576160 - Gm25902 misc_RNA misc_RNA MGP_C3HHeJ_T0044345.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48568302 48812608 - MGP_C3HHeJ_P0044345 Bbx protein_coding protein_coding MGP_C3HHeJ_T0044346.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48572239 48812558 - MGP_C3HHeJ_P0044346 Bbx protein_coding protein_coding MGP_C3HHeJ_T0044347.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48573073 48812607 - MGP_C3HHeJ_P0044347 Bbx protein_coding protein_coding MGP_C3HHeJ_T0044348.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48573598 48709373 - MGP_C3HHeJ_P0044348 Bbx protein_coding protein_coding MGP_C3HHeJ_T0044349.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48586930 48812592 - MGP_C3HHeJ_P0044349 Bbx protein_coding protein_coding MGP_C3HHeJ_T0044350.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48594935 48812607 - MGP_C3HHeJ_P0044350 Bbx protein_coding protein_coding MGP_C3HHeJ_T0044351.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48601248 48810174 - Bbx protein_coding processed_transcript MGP_C3HHeJ_T0044352.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48806203 48812527 - Bbx protein_coding retained_intron MGP_C3HHeJ_T0044353.1 MGP_C3HHeJ_G0022605.1 mouse_genomes_project 16 48807628 48812565 - Bbx protein_coding processed_transcript MGP_C3HHeJ_T0044526.1 MGP_C3HHeJ_G0022667.1 mouse_genomes_project 16 61715440 61767811 - MGP_C3HHeJ_P0044526 Arl13b protein_coding protein_coding MGP_C3HHeJ_T0044527.1 MGP_C3HHeJ_G0022667.1 mouse_genomes_project 16 61717110 61724584 - Arl13b protein_coding processed_transcript MGP_C3HHeJ_T0044529.1 MGP_C3HHeJ_G0022667.1 mouse_genomes_project 16 61747103 61767811 - Arl13b protein_coding retained_intron MGP_C3HHeJ_T0044933.1 MGP_C3HHeJ_G0022798.1 mouse_genomes_project 16 94123641 94165876 + MGP_C3HHeJ_P0044933 Sim2 protein_coding protein_coding MGP_C3HHeJ_T0043518.1 MGP_C3HHeJ_G0022393.1 mouse_genomes_project 16 19288069 19330893 + MGP_C3HHeJ_P0043518 Map3k13 protein_coding protein_coding MGP_C3HHeJ_T0043646.1 MGP_C3HHeJ_G0022436.1 mouse_genomes_project 16 26909937 27058757 - MGP_C3HHeJ_P0043646 Atp13a5 protein_coding protein_coding MGP_C3HHeJ_T0043647.1 MGP_C3HHeJ_G0022436.1 mouse_genomes_project 16 26910000 27058731 - MGP_C3HHeJ_P0043647 Atp13a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043648.1 MGP_C3HHeJ_G0022436.1 mouse_genomes_project 16 26910546 27058692 - MGP_C3HHeJ_P0043648 Atp13a5 protein_coding protein_coding MGP_C3HHeJ_T0043649.1 MGP_C3HHeJ_G0022436.1 mouse_genomes_project 16 27014122 27058608 - MGP_C3HHeJ_P0043649 Atp13a5 protein_coding protein_coding MGP_C3HHeJ_T0044717.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89621097 89822290 - MGP_C3HHeJ_P0044717 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044718.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89621097 89810581 - MGP_C3HHeJ_P0044718 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044719.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89621097 89822290 - MGP_C3HHeJ_P0044719 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044720.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89621097 89699280 - MGP_C3HHeJ_P0044720 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044721.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89621102 89636388 - MGP_C3HHeJ_P0044721 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044722.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89626076 89657397 - MGP_C3HHeJ_P0044722 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044723.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89626204 89678396 - Tiam1 protein_coding retained_intron MGP_C3HHeJ_T0044724.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89626768 89633629 - Tiam1 protein_coding processed_transcript MGP_C3HHeJ_T0044725.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89630031 89638337 - MGP_C3HHeJ_P0044725 Tiam1 protein_coding protein_coding MGP_C3HHeJ_T0044726.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89738951 89822290 - Tiam1 protein_coding processed_transcript MGP_C3HHeJ_T0044727.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89738992 89810491 - Tiam1 protein_coding processed_transcript MGP_C3HHeJ_T0044728.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89739062 89765337 - Tiam1 protein_coding processed_transcript MGP_C3HHeJ_T0044729.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89754570 89804408 - Tiam1 protein_coding retained_intron MGP_C3HHeJ_T0044730.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89754897 89821490 - Tiam1 protein_coding processed_transcript MGP_C3HHeJ_T0044731.1 MGP_C3HHeJ_G0022754.1 mouse_genomes_project 16 89804265 89827671 - Tiam1 protein_coding processed_transcript MGP_C3HHeJ_T0042742.1 MGP_C3HHeJ_G0022221.1 mouse_genomes_project 16 1772979 1783451 - MGP_C3HHeJ_P0042742 AU021092 protein_coding protein_coding MGP_C3HHeJ_T0000928.1 MGP_C3HHeJ_G0000867.1 mouse_genomes_project 16 56972480 56974767 - TEC TEC MGP_C3HHeJ_T0043580.1 MGP_C3HHeJ_G0022410.1 mouse_genomes_project 16 20645102 20660706 - MGP_C3HHeJ_P0043580 Rfc4 protein_coding protein_coding MGP_C3HHeJ_T0043581.1 MGP_C3HHeJ_G0022410.1 mouse_genomes_project 16 20645102 20660686 - MGP_C3HHeJ_P0043581 Rfc4 protein_coding protein_coding MGP_C3HHeJ_T0043582.1 MGP_C3HHeJ_G0022410.1 mouse_genomes_project 16 20645142 20645892 - Rfc4 protein_coding retained_intron MGP_C3HHeJ_T0043583.1 MGP_C3HHeJ_G0022410.1 mouse_genomes_project 16 20645854 20660660 - MGP_C3HHeJ_P0043583 Rfc4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0043584.1 MGP_C3HHeJ_G0022410.1 mouse_genomes_project 16 20653323 20660697 - MGP_C3HHeJ_P0043584 Rfc4 protein_coding protein_coding MGP_C3HHeJ_T0042677.1 MGP_C3HHeJ_G0022203.1 mouse_genomes_project 16 1171949 1225139 + Dnaja3 protein_coding processed_transcript MGP_C3HHeJ_T0042681.1 MGP_C3HHeJ_G0022203.1 mouse_genomes_project 16 1221777 1247348 + MGP_C3HHeJ_P0042681 Dnaja3 protein_coding protein_coding MGP_C3HHeJ_T0042682.1 MGP_C3HHeJ_G0022203.1 mouse_genomes_project 16 1221803 1247348 + MGP_C3HHeJ_P0042682 Dnaja3 protein_coding protein_coding MGP_C3HHeJ_T0042683.1 MGP_C3HHeJ_G0022203.1 mouse_genomes_project 16 1221821 1232917 + Dnaja3 protein_coding retained_intron MGP_C3HHeJ_T0043409.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17822725 17831441 + MGP_C3HHeJ_P0043409 Ap2m1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0043410.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17822794 17825084 + Ap2m1 protein_coding retained_intron MGP_C3HHeJ_T0043411.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17827221 17830229 + Ap2m1 protein_coding processed_transcript MGP_C3HHeJ_T0043412.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17827867 17829992 + Ap2m1 protein_coding retained_intron MGP_C3HHeJ_T0043413.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17827997 17829116 + Ap2m1 protein_coding retained_intron MGP_C3HHeJ_T0043414.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17828217 17828919 + Ap2m1 protein_coding retained_intron MGP_C3HHeJ_T0043415.1 MGP_C3HHeJ_G0022375.1 mouse_genomes_project 16 17830031 17830666 + Ap2m1 protein_coding retained_intron MGP_C3HHeJ_T0013001.1 MGP_C3HHeJ_G0011105.1 mouse_genomes_project 16 16406188 16424375 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0044533.1 MGP_C3HHeJ_G0022670.1 mouse_genomes_project 16 62470661 62795996 - MGP_C3HHeJ_P0044533 Epha3 protein_coding protein_coding MGP_C3HHeJ_T0042756.1 MGP_C3HHeJ_G0022226.1 mouse_genomes_project 16 5130892 5151252 + MGP_C3HHeJ_P0042756 Mettl22 protein_coding protein_coding MGP_C3HHeJ_T0042757.1 MGP_C3HHeJ_G0022226.1 mouse_genomes_project 16 5130895 5149250 + MGP_C3HHeJ_P0042757 Mettl22 protein_coding protein_coding MGP_C3HHeJ_T0042758.1 MGP_C3HHeJ_G0022226.1 mouse_genomes_project 16 5130908 5144899 + MGP_C3HHeJ_P0042758 Mettl22 protein_coding protein_coding MGP_C3HHeJ_T0042759.1 MGP_C3HHeJ_G0022226.1 mouse_genomes_project 16 5146133 5149411 + Mettl22 protein_coding retained_intron MGP_C3HHeJ_T0042760.1 MGP_C3HHeJ_G0022226.1 mouse_genomes_project 16 5147401 5150764 + Mettl22 protein_coding retained_intron MGP_C3HHeJ_T0044072.1 MGP_C3HHeJ_G0022538.1 mouse_genomes_project 16 36209592 36370484 + MGP_C3HHeJ_P0044072 Gsk3b protein_coding protein_coding MGP_C3HHeJ_T0044073.1 MGP_C3HHeJ_G0022538.1 mouse_genomes_project 16 36210860 36365182 + MGP_C3HHeJ_P0044073 Gsk3b protein_coding protein_coding MGP_C3HHeJ_T0044074.1 MGP_C3HHeJ_G0022538.1 mouse_genomes_project 16 36263666 36313834 + Gsk3b protein_coding processed_transcript MGP_C3HHeJ_T0044075.1 MGP_C3HHeJ_G0022538.1 mouse_genomes_project 16 36264622 36331736 + Gsk3b protein_coding retained_intron MGP_C3HHeJ_T0043222.1 MGP_C3HHeJ_G0022330.1 mouse_genomes_project 16 15069187 15072196 - MGP_C3HHeJ_P0043222 Slc25a1 protein_coding protein_coding MGP_C3HHeJ_T0043223.1 MGP_C3HHeJ_G0022330.1 mouse_genomes_project 16 15069658 15071320 - Slc25a1 protein_coding retained_intron MGP_C3HHeJ_T0043224.1 MGP_C3HHeJ_G0022330.1 mouse_genomes_project 16 15069692 15071393 - MGP_C3HHeJ_P0043224 Slc25a1 protein_coding protein_coding MGP_C3HHeJ_T0043225.1 MGP_C3HHeJ_G0022330.1 mouse_genomes_project 16 15070242 15071864 - Slc25a1 protein_coding retained_intron MGP_C3HHeJ_T0043226.1 MGP_C3HHeJ_G0022330.1 mouse_genomes_project 16 15071126 15072106 - Slc25a1 protein_coding retained_intron MGP_C3HHeJ_T0043227.1 MGP_C3HHeJ_G0022330.1 mouse_genomes_project 16 15071393 15072186 - Slc25a1 protein_coding retained_intron MGP_C3HHeJ_T0000942.1 MGP_C3HHeJ_G0000880.1 mouse_genomes_project 16 77044126 77045034 + TEC TEC MGP_C3HHeJ_T0042947.1 MGP_C3HHeJ_G0022271.1 mouse_genomes_project 16 10855591 10901760 + MGP_C3HHeJ_P0042947 Mpv17l protein_coding protein_coding MGP_C3HHeJ_T0042948.1 MGP_C3HHeJ_G0022271.1 mouse_genomes_project 16 10892971 10901092 + MGP_C3HHeJ_P0042948 Mpv17l protein_coding protein_coding MGP_C3HHeJ_T0042949.1 MGP_C3HHeJ_G0022271.1 mouse_genomes_project 16 10893036 10900951 + MGP_C3HHeJ_P0042949 Mpv17l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0042950.1 MGP_C3HHeJ_G0022271.1 mouse_genomes_project 16 10893043 10899248 + MGP_C3HHeJ_P0042950 Mpv17l protein_coding protein_coding MGP_C3HHeJ_T0042951.1 MGP_C3HHeJ_G0022271.1 mouse_genomes_project 16 10893055 10904331 + MGP_C3HHeJ_P0042951 Mpv17l protein_coding protein_coding MGP_C3HHeJ_T0042952.1 MGP_C3HHeJ_G0022271.1 mouse_genomes_project 16 10893435 10899214 + MGP_C3HHeJ_P0042952 Mpv17l protein_coding protein_coding MGP_C3HHeJ_T0044655.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87253024 87265586 - MGP_C3HHeJ_P0044655 Cct8 protein_coding protein_coding MGP_C3HHeJ_T0044656.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87253706 87265501 - MGP_C3HHeJ_P0044656 Cct8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0044657.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87253706 87265501 - MGP_C3HHeJ_P0044657 Cct8 protein_coding protein_coding MGP_C3HHeJ_T0044658.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87254617 87258496 - MGP_C3HHeJ_P0044658 Cct8 protein_coding protein_coding MGP_C3HHeJ_T0044659.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87255089 87255721 - Cct8 protein_coding retained_intron MGP_C3HHeJ_T0044660.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87255229 87256006 - Cct8 protein_coding retained_intron MGP_C3HHeJ_T0044661.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87255377 87256148 - Cct8 protein_coding retained_intron MGP_C3HHeJ_T0044662.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87258497 87261101 - Cct8 protein_coding processed_transcript MGP_C3HHeJ_T0044663.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87258583 87265572 - MGP_C3HHeJ_P0044663 Cct8 protein_coding protein_coding MGP_C3HHeJ_T0044664.1 MGP_C3HHeJ_G0022711.1 mouse_genomes_project 16 87260140 87265417 - MGP_C3HHeJ_P0044664 Cct8 protein_coding protein_coding MGP_C3HHeJ_T0017308.1 MGP_C3HHeJ_G0015094.1 mouse_genomes_project 16 93332511 93348778 - 1810053B23Rik processed_transcript lincRNA MGP_C3HHeJ_T0017309.1 MGP_C3HHeJ_G0015094.1 mouse_genomes_project 16 93332956 93342439 - 1810053B23Rik processed_transcript lincRNA MGP_C3HHeJ_T0017310.1 MGP_C3HHeJ_G0015094.1 mouse_genomes_project 16 93333511 93343311 - 1810053B23Rik processed_transcript lincRNA MGP_C3HHeJ_T0017311.1 MGP_C3HHeJ_G0015094.1 mouse_genomes_project 16 93333979 93343321 - 1810053B23Rik processed_transcript lincRNA MGP_C3HHeJ_T0017312.1 MGP_C3HHeJ_G0015094.1 mouse_genomes_project 16 93335294 93349609 - 1810053B23Rik processed_transcript retained_intron MGP_C3HHeJ_T0017313.1 MGP_C3HHeJ_G0015094.1 mouse_genomes_project 16 93336033 93349577 - 1810053B23Rik processed_transcript retained_intron MGP_C3HHeJ_T0044502.1 MGP_C3HHeJ_G0022662.1 mouse_genomes_project 16 58228206 58248727 + MGP_C3HHeJ_P0044502 Mina protein_coding protein_coding MGP_C3HHeJ_T0044503.1 MGP_C3HHeJ_G0022662.1 mouse_genomes_project 16 58228235 58233998 + MGP_C3HHeJ_P0044503 Mina protein_coding protein_coding MGP_C3HHeJ_T0044504.1 MGP_C3HHeJ_G0022662.1 mouse_genomes_project 16 58228253 58247934 + MGP_C3HHeJ_P0044504 Mina protein_coding protein_coding MGP_C3HHeJ_T0044505.1 MGP_C3HHeJ_G0022662.1 mouse_genomes_project 16 58228499 58248557 + MGP_C3HHeJ_P0044505 Mina protein_coding protein_coding MGP_C3HHeJ_T0044506.1 MGP_C3HHeJ_G0022662.1 mouse_genomes_project 16 58228774 58232189 + MGP_C3HHeJ_P0044506 Mina protein_coding protein_coding MGP_C3HHeJ_T0044507.1 MGP_C3HHeJ_G0022662.1 mouse_genomes_project 16 58243834 58246116 + Mina protein_coding retained_intron MGP_C3HHeJ_T0000038.1 MGP_C3HHeJ_G0000031.1 mouse_genomes_project 16 16311880 16311918 - MGP_C3HHeJ_P0000038 Iglj3 IG_J_gene IG_J_gene MGP_C3HHeJ_T0100281.1 MGP_C3HHeJ_G0038475.1 mouse_genomes_project 16 5141227 5141309 - Gm23706 snoRNA snoRNA MGP_C3HHeJ_T0042800.1 MGP_C3HHeJ_G0022236.1 mouse_genomes_project 16 6944994 6995089 + MGP_C3HHeJ_P0042800 Atf7ip2 protein_coding protein_coding MGP_C3HHeJ_T0042801.1 MGP_C3HHeJ_G0022236.1 mouse_genomes_project 16 6945188 6988570 + MGP_C3HHeJ_P0042801 Atf7ip2 protein_coding protein_coding MGP_C3HHeJ_T0042802.1 MGP_C3HHeJ_G0022236.1 mouse_genomes_project 16 6945204 6992852 + MGP_C3HHeJ_P0042802 Atf7ip2 protein_coding protein_coding MGP_C3HHeJ_T0042803.1 MGP_C3HHeJ_G0022236.1 mouse_genomes_project 16 6945229 6966688 + Atf7ip2 protein_coding retained_intron MGP_C3HHeJ_T0044879.1 MGP_C3HHeJ_G0022782.1 mouse_genomes_project 16 92010313 92064082 + MGP_C3HHeJ_P0044879 Mrps6 protein_coding protein_coding MGP_C3HHeJ_T0044882.1 MGP_C3HHeJ_G0022782.1 mouse_genomes_project 16 92058125 92064082 + Mrps6 protein_coding processed_transcript MGP_C3HHeJ_T0044011.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34901984 34905165 + Iqcb1 protein_coding processed_transcript MGP_C3HHeJ_T0044012.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34902006 34954019 + MGP_C3HHeJ_P0044012 Iqcb1 protein_coding protein_coding MGP_C3HHeJ_T0044013.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34902007 34954011 + MGP_C3HHeJ_P0044013 Iqcb1 protein_coding protein_coding MGP_C3HHeJ_T0044014.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34927303 34931677 + Iqcb1 protein_coding retained_intron MGP_C3HHeJ_T0044015.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34927698 34932713 + Iqcb1 protein_coding processed_transcript MGP_C3HHeJ_T0044016.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34931556 34940923 + Iqcb1 protein_coding processed_transcript MGP_C3HHeJ_T0044017.1 MGP_C3HHeJ_G0022524.1 mouse_genomes_project 16 34932929 34937789 + Iqcb1 protein_coding processed_transcript MGP_C3HHeJ_T0044190.1 MGP_C3HHeJ_G0022566.1 mouse_genomes_project 16 42482856 42538473 + MGP_C3HHeJ_P0044190 Usf3 protein_coding protein_coding MGP_C3HHeJ_T0044191.1 MGP_C3HHeJ_G0022566.1 mouse_genomes_project 16 42484471 42526476 + Usf3 protein_coding retained_intron MGP_C3HHeJ_T0044192.1 MGP_C3HHeJ_G0022566.1 mouse_genomes_project 16 42484471 42523943 + MGP_C3HHeJ_P0044192 Usf3 protein_coding protein_coding MGP_C3HHeJ_T0044193.1 MGP_C3HHeJ_G0022566.1 mouse_genomes_project 16 42484471 42538471 + MGP_C3HHeJ_P0044193 Usf3 protein_coding protein_coding MGP_C3HHeJ_T0013048.1 MGP_C3HHeJ_G0011152.1 mouse_genomes_project 16 66667424 66667946 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045598.1 MGP_C3HHeJ_G0023019.1 mouse_genomes_project 17 22982928 23012789 - MGP_C3HHeJ_P0045598 Ccnf protein_coding protein_coding MGP_C3HHeJ_T0045371.1 MGP_C3HHeJ_G0022915.1 mouse_genomes_project 17 16001376 16002348 + MGP_C3HHeJ_P0045371 Fpr-rs4 protein_coding protein_coding MGP_C3HHeJ_T0100345.1 MGP_C3HHeJ_G0038539.1 mouse_genomes_project 17 49802929 49803061 + Gm24071 snoRNA snoRNA MGP_C3HHeJ_T0006848.1 MGP_C3HHeJ_G0005633.1 mouse_genomes_project 17 31548279 31578164 + Gm17276 lincRNA lincRNA MGP_C3HHeJ_T0046497.1 MGP_C3HHeJ_G0023230.1 mouse_genomes_project 17 31919300 31943902 + MGP_C3HHeJ_P0046497 Cyp4f39 protein_coding protein_coding MGP_C3HHeJ_T0013153.1 MGP_C3HHeJ_G0011257.1 mouse_genomes_project 17 83455545 83456539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045553.1 MGP_C3HHeJ_G0023011.1 mouse_genomes_project 17 22782088 22789692 + MGP_C3HHeJ_P0045553 Prss27 protein_coding protein_coding MGP_C3HHeJ_T0006894.1 MGP_C3HHeJ_G0005666.1 mouse_genomes_project 17 72984268 72985839 - Gm26510 lincRNA lincRNA MGP_C3HHeJ_T0006895.1 MGP_C3HHeJ_G0005666.1 mouse_genomes_project 17 72984271 73041604 - Gm26510 lincRNA lincRNA MGP_C3HHeJ_T0045874.1 MGP_C3HHeJ_G0023088.1 mouse_genomes_project 17 24609156 24614870 - MGP_C3HHeJ_P0045874 Msln protein_coding protein_coding MGP_C3HHeJ_T0013080.1 MGP_C3HHeJ_G0011184.1 mouse_genomes_project 17 24168868 24171779 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046758.1 MGP_C3HHeJ_G0023291.1 mouse_genomes_project 17 33790225 33793511 - MGP_C3HHeJ_P0046758 Gm15821 protein_coding protein_coding MGP_C3HHeJ_T0046856.1 MGP_C3HHeJ_G0023313.1 mouse_genomes_project 17 34372317 34456875 + MGP_C3HHeJ_P0046856 Tnxb protein_coding unknown_likely_coding MGP_C3HHeJ_T0046857.1 MGP_C3HHeJ_G0023313.1 mouse_genomes_project 17 34385998 34456882 + MGP_C3HHeJ_P0046857 Tnxb protein_coding protein_coding MGP_C3HHeJ_T0046858.1 MGP_C3HHeJ_G0023313.1 mouse_genomes_project 17 34385998 34456694 + MGP_C3HHeJ_P0046858 Tnxb protein_coding protein_coding MGP_C3HHeJ_T0047386.1 MGP_C3HHeJ_G0023453.1 mouse_genomes_project 17 37951974 37952967 + MGP_C3HHeJ_P0047386 Olfr120 protein_coding protein_coding MGP_C3HHeJ_T0017315.1 MGP_C3HHeJ_G0015096.1 mouse_genomes_project 17 5738912 5761226 - 4930506C21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017316.1 MGP_C3HHeJ_G0015096.1 mouse_genomes_project 17 5742505 5744076 - 4930506C21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017317.1 MGP_C3HHeJ_G0015096.1 mouse_genomes_project 17 5743327 5761254 - 4930506C21Rik processed_transcript retained_intron MGP_C3HHeJ_T0099077.1 MGP_C3HHeJ_G0037271.1 mouse_genomes_project 17 29519730 29519803 + Gm25049 snRNA snRNA MGP_C3HHeJ_T0101796.1 MGP_C3HHeJ_G0039761.1 mouse_genomes_project 17 18755524 18756128 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047791.1 MGP_C3HHeJ_G0023587.1 mouse_genomes_project 17 49292245 49308880 - MGP_C3HHeJ_P0047791 protein_coding protein_coding MGP_C3HHeJ_T0006835.1 MGP_C3HHeJ_G0005625.1 mouse_genomes_project 17 27601339 27602107 - Gm20109 lincRNA lincRNA MGP_C3HHeJ_T0010117.1 MGP_C3HHeJ_G0008250.1 mouse_genomes_project 17 34673528 34673595 - Mir6970 miRNA miRNA MGP_C3HHeJ_T0046656.1 MGP_C3HHeJ_G0023271.1 mouse_genomes_project 17 33472301 33473824 - MGP_C3HHeJ_P0046656 Pfdn6 protein_coding protein_coding MGP_C3HHeJ_T0046657.1 MGP_C3HHeJ_G0023271.1 mouse_genomes_project 17 33472390 33473811 - MGP_C3HHeJ_P0046657 Pfdn6 protein_coding protein_coding MGP_C3HHeJ_T0046658.1 MGP_C3HHeJ_G0023271.1 mouse_genomes_project 17 33472399 33473806 - MGP_C3HHeJ_P0046658 Pfdn6 protein_coding protein_coding MGP_C3HHeJ_T0046659.1 MGP_C3HHeJ_G0023271.1 mouse_genomes_project 17 33472403 33473785 - MGP_C3HHeJ_P0046659 Pfdn6 protein_coding protein_coding MGP_C3HHeJ_T0046660.1 MGP_C3HHeJ_G0023271.1 mouse_genomes_project 17 33472426 33473811 - MGP_C3HHeJ_P0046660 Pfdn6 protein_coding protein_coding MGP_C3HHeJ_T0046661.1 MGP_C3HHeJ_G0023271.1 mouse_genomes_project 17 33472838 33473300 - Pfdn6 protein_coding retained_intron MGP_C3HHeJ_T0047383.1 MGP_C3HHeJ_G0023450.1 mouse_genomes_project 17 37884113 37893079 + MGP_C3HHeJ_P0047383 Olfr118 protein_coding protein_coding MGP_C3HHeJ_T0047685.1 MGP_C3HHeJ_G0023564.1 mouse_genomes_project 17 47975763 48059156 - MGP_C3HHeJ_P0047685 Ubr2 protein_coding protein_coding MGP_C3HHeJ_T0047686.1 MGP_C3HHeJ_G0023564.1 mouse_genomes_project 17 47975763 48059156 - MGP_C3HHeJ_P0047686 Ubr2 protein_coding protein_coding MGP_C3HHeJ_T0046371.1 MGP_C3HHeJ_G0023199.1 mouse_genomes_project 17 29421602 29838005 - MGP_C3HHeJ_P0046371 Btbd9 protein_coding protein_coding MGP_C3HHeJ_T0046372.1 MGP_C3HHeJ_G0023199.1 mouse_genomes_project 17 29421602 29838005 - MGP_C3HHeJ_P0046372 Btbd9 protein_coding protein_coding MGP_C3HHeJ_T0006816.1 MGP_C3HHeJ_G0005608.1 mouse_genomes_project 17 12968416 12977615 - Gm5091 lincRNA lincRNA MGP_C3HHeJ_T0045160.1 MGP_C3HHeJ_G0022853.1 mouse_genomes_project 17 4410344 4482007 + MGP_C3HHeJ_P0045160 protein_coding protein_coding MGP_C3HHeJ_T0046992.1 MGP_C3HHeJ_G0023340.1 mouse_genomes_project 17 34912515 34915614 - MGP_C3HHeJ_P0046992 Ly6g6d protein_coding protein_coding MGP_C3HHeJ_T0046993.1 MGP_C3HHeJ_G0023340.1 mouse_genomes_project 17 34912549 34919227 - Ly6g6d protein_coding processed_transcript MGP_C3HHeJ_T0046994.1 MGP_C3HHeJ_G0023340.1 mouse_genomes_project 17 34912617 34915578 - Ly6g6d protein_coding retained_intron MGP_C3HHeJ_T0046995.1 MGP_C3HHeJ_G0023340.1 mouse_genomes_project 17 34915023 34919227 - Ly6g6d protein_coding retained_intron MGP_C3HHeJ_T0046996.1 MGP_C3HHeJ_G0023340.1 mouse_genomes_project 17 34915326 34919218 - Ly6g6d protein_coding processed_transcript MGP_C3HHeJ_T0046116.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26574814 26619639 - MGP_C3HHeJ_P0046116 Nudt3 protein_coding protein_coding MGP_C3HHeJ_T0046117.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26576008 26619138 - MGP_C3HHeJ_P0046117 Nudt3 protein_coding protein_coding MGP_C3HHeJ_T0046118.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26576139 26578670 - Nudt3 protein_coding retained_intron MGP_C3HHeJ_T0046119.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26576222 26619437 - MGP_C3HHeJ_P0046119 Nudt3 protein_coding protein_coding MGP_C3HHeJ_T0046120.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26576267 26618563 - Nudt3 protein_coding processed_transcript MGP_C3HHeJ_T0046121.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26576386 26607393 - Nudt3 protein_coding processed_transcript MGP_C3HHeJ_T0046122.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26577311 26619437 - MGP_C3HHeJ_P0046122 Nudt3 protein_coding protein_coding MGP_C3HHeJ_T0046123.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26577384 26619014 - MGP_C3HHeJ_P0046123 Nudt3 protein_coding protein_coding MGP_C3HHeJ_T0046124.1 MGP_C3HHeJ_G0023147.1 mouse_genomes_project 17 26592388 26619437 - Nudt3 protein_coding retained_intron MGP_C3HHeJ_T0046684.1 MGP_C3HHeJ_G0023278.1 mouse_genomes_project 17 33581511 33585405 - MGP_C3HHeJ_P0046684 Ring1 protein_coding protein_coding MGP_C3HHeJ_T0046685.1 MGP_C3HHeJ_G0023278.1 mouse_genomes_project 17 33581819 33584661 - Ring1 protein_coding retained_intron MGP_C3HHeJ_T0046686.1 MGP_C3HHeJ_G0023278.1 mouse_genomes_project 17 33584915 33585377 - Ring1 protein_coding retained_intron MGP_C3HHeJ_T0048221.1 MGP_C3HHeJ_G0023733.1 mouse_genomes_project 17 73698774 73725212 + MGP_C3HHeJ_P0048221 Spdya protein_coding protein_coding MGP_C3HHeJ_T0048222.1 MGP_C3HHeJ_G0023733.1 mouse_genomes_project 17 73698774 73736026 + MGP_C3HHeJ_P0048222 Spdya protein_coding protein_coding MGP_C3HHeJ_T0048223.1 MGP_C3HHeJ_G0023733.1 mouse_genomes_project 17 73698785 73736026 + MGP_C3HHeJ_P0048223 Spdya protein_coding protein_coding MGP_C3HHeJ_T0048224.1 MGP_C3HHeJ_G0023733.1 mouse_genomes_project 17 73702974 73735167 + MGP_C3HHeJ_P0048224 Spdya protein_coding protein_coding MGP_C3HHeJ_T0045472.1 MGP_C3HHeJ_G0022982.1 mouse_genomes_project 17 22266518 22278756 - MGP_C3HHeJ_P0045472 Zfp13 protein_coding protein_coding MGP_C3HHeJ_T0045473.1 MGP_C3HHeJ_G0022982.1 mouse_genomes_project 17 22266525 22293470 - MGP_C3HHeJ_P0045473 Zfp13 protein_coding protein_coding MGP_C3HHeJ_T0099102.1 MGP_C3HHeJ_G0037296.1 mouse_genomes_project 17 86899290 86899397 - Gm24492 snRNA snRNA MGP_C3HHeJ_T0010097.1 MGP_C3HHeJ_G0008230.1 mouse_genomes_project 17 24693439 24693503 - Mir3082 miRNA miRNA MGP_C3HHeJ_T0047755.1 MGP_C3HHeJ_G0023581.1 mouse_genomes_project 17 48826612 48836202 + MGP_C3HHeJ_P0047755 Pgc protein_coding protein_coding MGP_C3HHeJ_T0047756.1 MGP_C3HHeJ_G0023581.1 mouse_genomes_project 17 48826614 48832820 + MGP_C3HHeJ_P0047756 Pgc protein_coding protein_coding MGP_C3HHeJ_T0045794.1 MGP_C3HHeJ_G0023066.1 mouse_genomes_project 17 24020713 24023820 + MGP_C3HHeJ_P0045794 BC003965 protein_coding protein_coding MGP_C3HHeJ_T0101829.1 MGP_C3HHeJ_G0039794.1 mouse_genomes_project 17 36265710 36270065 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046002.1 MGP_C3HHeJ_G0023118.1 mouse_genomes_project 17 25090725 25095643 - MGP_C3HHeJ_P0046002 Arhgdig protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046004.1 MGP_C3HHeJ_G0023118.1 mouse_genomes_project 17 25093682 25095850 - MGP_C3HHeJ_P0046004 Arhgdig protein_coding protein_coding MGP_C3HHeJ_T0046005.1 MGP_C3HHeJ_G0023118.1 mouse_genomes_project 17 25093896 25095869 - MGP_C3HHeJ_P0046005 Arhgdig protein_coding protein_coding MGP_C3HHeJ_T0046006.1 MGP_C3HHeJ_G0023118.1 mouse_genomes_project 17 25093935 25102284 - Arhgdig protein_coding processed_transcript MGP_C3HHeJ_T0046007.1 MGP_C3HHeJ_G0023118.1 mouse_genomes_project 17 25093990 25095644 - Arhgdig protein_coding retained_intron MGP_C3HHeJ_T0000955.1 MGP_C3HHeJ_G0000892.1 mouse_genomes_project 17 53089895 53094087 - TEC TEC MGP_C3HHeJ_T0047281.1 MGP_C3HHeJ_G0023405.1 mouse_genomes_project 17 36760753 36764134 - MGP_C3HHeJ_P0047281 H2-M9 protein_coding protein_coding MGP_C3HHeJ_T0047282.1 MGP_C3HHeJ_G0023405.1 mouse_genomes_project 17 36761874 36764134 - MGP_C3HHeJ_P0047282 H2-M9 protein_coding protein_coding MGP_C3HHeJ_T0013121.1 MGP_C3HHeJ_G0011225.1 mouse_genomes_project 17 48092488 48092941 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013061.1 MGP_C3HHeJ_G0011165.1 mouse_genomes_project 17 3003491 3003975 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048387.1 MGP_C3HHeJ_G0023801.1 mouse_genomes_project 17 86416682 86433174 - MGP_C3HHeJ_P0048387 Haao protein_coding protein_coding MGP_C3HHeJ_T0047426.1 MGP_C3HHeJ_G0023486.1 mouse_genomes_project 17 41480315 41515019 - MGP_C3HHeJ_P0047426 Crisp2 protein_coding protein_coding MGP_C3HHeJ_T0047427.1 MGP_C3HHeJ_G0023486.1 mouse_genomes_project 17 41504123 41515050 - MGP_C3HHeJ_P0047427 Crisp2 protein_coding protein_coding MGP_C3HHeJ_T0047428.1 MGP_C3HHeJ_G0023486.1 mouse_genomes_project 17 41505818 41514980 - MGP_C3HHeJ_P0047428 Crisp2 protein_coding protein_coding MGP_C3HHeJ_T0047429.1 MGP_C3HHeJ_G0023486.1 mouse_genomes_project 17 41505894 41514971 - MGP_C3HHeJ_P0047429 Crisp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047430.1 MGP_C3HHeJ_G0023486.1 mouse_genomes_project 17 41514159 41521495 - Crisp2 protein_coding processed_transcript MGP_C3HHeJ_T0101785.1 MGP_C3HHeJ_G0039750.1 mouse_genomes_project 17 17249779 17641095 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0003644.1 MGP_C3HHeJ_G0003289.1 mouse_genomes_project 17 10310284 10435842 + antisense antisense MGP_C3HHeJ_T0003645.1 MGP_C3HHeJ_G0003289.1 mouse_genomes_project 17 10310303 10402869 + antisense antisense MGP_C3HHeJ_T0003646.1 MGP_C3HHeJ_G0003289.1 mouse_genomes_project 17 10310347 10387061 + antisense antisense MGP_C3HHeJ_T0003647.1 MGP_C3HHeJ_G0003289.1 mouse_genomes_project 17 10310358 10386222 + antisense antisense MGP_C3HHeJ_T0003648.1 MGP_C3HHeJ_G0003289.1 mouse_genomes_project 17 10310371 10402770 + antisense antisense MGP_C3HHeJ_T0003649.1 MGP_C3HHeJ_G0003289.1 mouse_genomes_project 17 10387448 10402954 + antisense antisense MGP_C3HHeJ_T0006824.1 MGP_C3HHeJ_G0005616.1 mouse_genomes_project 17 22444348 22452044 + 9530082P21Rik lincRNA lincRNA MGP_C3HHeJ_T0006825.1 MGP_C3HHeJ_G0005616.1 mouse_genomes_project 17 22450370 22455271 + 9530082P21Rik lincRNA lincRNA MGP_C3HHeJ_T0006826.1 MGP_C3HHeJ_G0005616.1 mouse_genomes_project 17 22450471 22452336 + 9530082P21Rik lincRNA lincRNA MGP_C3HHeJ_T0047934.1 MGP_C3HHeJ_G0023638.1 mouse_genomes_project 17 57593563 57595830 - MGP_C3HHeJ_P0047934 Lrg1 protein_coding protein_coding MGP_C3HHeJ_T0045889.1 MGP_C3HHeJ_G0023091.1 mouse_genomes_project 17 24646967 24650859 + MGP_C3HHeJ_P0045889 Ccdc78 protein_coding protein_coding MGP_C3HHeJ_T0017329.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23176616 23188952 - D330041H03Rik processed_transcript antisense MGP_C3HHeJ_T0017330.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23183100 23189036 - D330041H03Rik processed_transcript antisense MGP_C3HHeJ_T0017331.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23183116 23188930 - D330041H03Rik processed_transcript antisense MGP_C3HHeJ_T0017332.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23186550 23188151 - D330041H03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017333.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23186558 23192665 - D330041H03Rik processed_transcript antisense MGP_C3HHeJ_T0017334.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23186945 23188950 - D330041H03Rik processed_transcript retained_intron MGP_C3HHeJ_T0017335.1 MGP_C3HHeJ_G0015103.1 mouse_genomes_project 17 23187020 23188922 - D330041H03Rik processed_transcript antisense MGP_C3HHeJ_T0045667.1 MGP_C3HHeJ_G0023038.1 mouse_genomes_project 17 23488256 23494569 - MGP_C3HHeJ_P0045667 Syngr3 protein_coding protein_coding MGP_C3HHeJ_T0045668.1 MGP_C3HHeJ_G0023038.1 mouse_genomes_project 17 23489799 23492816 - Syngr3 protein_coding processed_transcript MGP_C3HHeJ_T0101812.1 MGP_C3HHeJ_G0039777.1 mouse_genomes_project 17 33982977 33992208 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046734.1 MGP_C3HHeJ_G0023285.1 mouse_genomes_project 17 33688231 33707300 + MGP_C3HHeJ_P0046734 H2-DMa protein_coding unknown_likely_coding MGP_C3HHeJ_T0046735.1 MGP_C3HHeJ_G0023285.1 mouse_genomes_project 17 33705239 33706393 + H2-DMa protein_coding retained_intron MGP_C3HHeJ_T0047062.1 MGP_C3HHeJ_G0023356.1 mouse_genomes_project 17 35059788 35061949 - MGP_C3HHeJ_P0047062 Lta protein_coding protein_coding MGP_C3HHeJ_T0013099.1 MGP_C3HHeJ_G0011203.1 mouse_genomes_project 17 36297783 36298341 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010140.1 MGP_C3HHeJ_G0008273.1 mouse_genomes_project 17 80721089 80721173 + Gm25069 miRNA miRNA MGP_C3HHeJ_T0047261.1 MGP_C3HHeJ_G0023397.1 mouse_genomes_project 17 36316018 36317213 - MGP_C3HHeJ_P0047261 protein_coding protein_coding MGP_C3HHeJ_T0048292.1 MGP_C3HHeJ_G0023758.1 mouse_genomes_project 17 77843297 77857935 - MGP_C3HHeJ_P0048292 Fam98a protein_coding protein_coding MGP_C3HHeJ_T0048293.1 MGP_C3HHeJ_G0023758.1 mouse_genomes_project 17 77845242 77846784 - Fam98a protein_coding retained_intron MGP_C3HHeJ_T0048294.1 MGP_C3HHeJ_G0023758.1 mouse_genomes_project 17 77850678 77857785 - Fam98a protein_coding retained_intron MGP_C3HHeJ_T0045113.1 MGP_C3HHeJ_G0022840.1 mouse_genomes_project 17 3068462 3119981 + MGP_C3HHeJ_P0045113 Snx9 protein_coding protein_coding MGP_C3HHeJ_T0048410.1 MGP_C3HHeJ_G0023813.1 mouse_genomes_project 17 88301847 88313387 + MGP_C3HHeJ_P0048410 Six3 protein_coding protein_coding MGP_C3HHeJ_T0048411.1 MGP_C3HHeJ_G0023813.1 mouse_genomes_project 17 88309043 88314356 + MGP_C3HHeJ_P0048411 Six3 protein_coding protein_coding MGP_C3HHeJ_T0048412.1 MGP_C3HHeJ_G0023813.1 mouse_genomes_project 17 88309212 88317485 + MGP_C3HHeJ_P0048412 Six3 protein_coding protein_coding MGP_C3HHeJ_T0099087.1 MGP_C3HHeJ_G0037281.1 mouse_genomes_project 17 46553430 46553511 + Gm25008 snRNA snRNA MGP_C3HHeJ_T0048298.1 MGP_C3HHeJ_G0023761.1 mouse_genomes_project 17 80960025 81056577 + MGP_C3HHeJ_P0048298 Vit protein_coding protein_coding MGP_C3HHeJ_T0048072.1 MGP_C3HHeJ_G0023694.1 mouse_genomes_project 17 65715958 65716450 - MGP_C3HHeJ_P0048072 A930002H24Rik protein_coding protein_coding MGP_C3HHeJ_T0046566.1 MGP_C3HHeJ_G0023256.1 mouse_genomes_project 17 33043550 33097632 + MGP_C3HHeJ_P0046566 Myo1f protein_coding protein_coding MGP_C3HHeJ_T0046567.1 MGP_C3HHeJ_G0023256.1 mouse_genomes_project 17 33043576 33097628 + MGP_C3HHeJ_P0046567 Myo1f protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046568.1 MGP_C3HHeJ_G0023256.1 mouse_genomes_project 17 33043596 33062966 + MGP_C3HHeJ_P0046568 Myo1f protein_coding protein_coding MGP_C3HHeJ_T0046569.1 MGP_C3HHeJ_G0023256.1 mouse_genomes_project 17 33067504 33097634 + Myo1f protein_coding retained_intron MGP_C3HHeJ_T0013077.1 MGP_C3HHeJ_G0011181.1 mouse_genomes_project 17 22199847 22200167 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047100.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35458779 35472796 + MGP_C3HHeJ_P0047100 Cchcr1 protein_coding protein_coding MGP_C3HHeJ_T0047101.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35458795 35462167 + Cchcr1 protein_coding retained_intron MGP_C3HHeJ_T0047102.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35458855 35472815 + MGP_C3HHeJ_P0047102 Cchcr1 protein_coding protein_coding MGP_C3HHeJ_T0047103.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35459142 35472805 + MGP_C3HHeJ_P0047103 Cchcr1 protein_coding protein_coding MGP_C3HHeJ_T0047104.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35461563 35462803 + Cchcr1 protein_coding processed_transcript MGP_C3HHeJ_T0047105.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35466484 35467237 + Cchcr1 protein_coding retained_intron MGP_C3HHeJ_T0047106.1 MGP_C3HHeJ_G0023368.1 mouse_genomes_project 17 35470696 35471233 + Cchcr1 protein_coding retained_intron MGP_C3HHeJ_T0046662.1 MGP_C3HHeJ_G0023272.1 mouse_genomes_project 17 33474147 33483071 + MGP_C3HHeJ_P0046662 Wdr46 protein_coding protein_coding MGP_C3HHeJ_T0046663.1 MGP_C3HHeJ_G0023272.1 mouse_genomes_project 17 33474204 33474948 + Wdr46 protein_coding retained_intron MGP_C3HHeJ_T0046664.1 MGP_C3HHeJ_G0023272.1 mouse_genomes_project 17 33474892 33477182 + Wdr46 protein_coding retained_intron MGP_C3HHeJ_T0101837.1 MGP_C3HHeJ_G0039802.1 mouse_genomes_project 17 36657740 36657961 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047057.1 MGP_C3HHeJ_G0023354.1 mouse_genomes_project 17 35050201 35052077 + MGP_C3HHeJ_P0047057 Ltb protein_coding protein_coding MGP_C3HHeJ_T0047058.1 MGP_C3HHeJ_G0023354.1 mouse_genomes_project 17 35050285 35052080 + Ltb protein_coding retained_intron MGP_C3HHeJ_T0047059.1 MGP_C3HHeJ_G0023354.1 mouse_genomes_project 17 35050388 35052095 + MGP_C3HHeJ_P0047059 Ltb protein_coding protein_coding MGP_C3HHeJ_T0047096.1 MGP_C3HHeJ_G0023367.1 mouse_genomes_project 17 35454439 35458504 - MGP_C3HHeJ_P0047096 Tcf19 protein_coding protein_coding MGP_C3HHeJ_T0047097.1 MGP_C3HHeJ_G0023367.1 mouse_genomes_project 17 35454442 35458465 - MGP_C3HHeJ_P0047097 Tcf19 protein_coding protein_coding MGP_C3HHeJ_T0047098.1 MGP_C3HHeJ_G0023367.1 mouse_genomes_project 17 35456333 35458500 - MGP_C3HHeJ_P0047098 Tcf19 protein_coding protein_coding MGP_C3HHeJ_T0047099.1 MGP_C3HHeJ_G0023367.1 mouse_genomes_project 17 35456497 35458227 - MGP_C3HHeJ_P0047099 Tcf19 protein_coding protein_coding MGP_C3HHeJ_T0048075.1 MGP_C3HHeJ_G0023696.1 mouse_genomes_project 17 66139826 66191662 - MGP_C3HHeJ_P0048075 Pja2 protein_coding protein_coding MGP_C3HHeJ_T0048076.1 MGP_C3HHeJ_G0023696.1 mouse_genomes_project 17 66139827 66172821 - MGP_C3HHeJ_P0048076 Pja2 protein_coding protein_coding MGP_C3HHeJ_T0048077.1 MGP_C3HHeJ_G0023696.1 mouse_genomes_project 17 66139827 66172821 - MGP_C3HHeJ_P0048077 Pja2 protein_coding protein_coding MGP_C3HHeJ_T0048078.1 MGP_C3HHeJ_G0023696.1 mouse_genomes_project 17 66139841 66191611 - MGP_C3HHeJ_P0048078 Pja2 protein_coding protein_coding MGP_C3HHeJ_T0048003.1 MGP_C3HHeJ_G0023660.1 mouse_genomes_project 17 58308406 58314621 - MGP_C3HHeJ_P0048003 Nrtn protein_coding protein_coding MGP_C3HHeJ_T0000948.1 MGP_C3HHeJ_G0000886.1 mouse_genomes_project 17 8827041 8829888 - TEC TEC MGP_C3HHeJ_T0003715.1 MGP_C3HHeJ_G0003339.1 mouse_genomes_project 17 72959605 72985851 + Gm28727 antisense antisense MGP_C3HHeJ_T0045330.1 MGP_C3HHeJ_G0022903.1 mouse_genomes_project 17 13266284 13275196 - MGP_C3HHeJ_P0045330 Pdcd2 protein_coding protein_coding MGP_C3HHeJ_T0045331.1 MGP_C3HHeJ_G0022903.1 mouse_genomes_project 17 13268656 13275216 - MGP_C3HHeJ_P0045331 Pdcd2 protein_coding protein_coding MGP_C3HHeJ_T0045332.1 MGP_C3HHeJ_G0022903.1 mouse_genomes_project 17 13268674 13269216 - Pdcd2 protein_coding retained_intron MGP_C3HHeJ_T0045333.1 MGP_C3HHeJ_G0022903.1 mouse_genomes_project 17 13269775 13274999 - Pdcd2 protein_coding retained_intron MGP_C3HHeJ_T0045334.1 MGP_C3HHeJ_G0022903.1 mouse_genomes_project 17 13269863 13274901 - Pdcd2 protein_coding retained_intron MGP_C3HHeJ_T0046141.1 MGP_C3HHeJ_G0023151.1 mouse_genomes_project 17 26759055 26835619 - MGP_C3HHeJ_P0046141 D17Wsu92e protein_coding protein_coding MGP_C3HHeJ_T0046142.1 MGP_C3HHeJ_G0023151.1 mouse_genomes_project 17 26759069 26835552 - MGP_C3HHeJ_P0046142 D17Wsu92e protein_coding protein_coding MGP_C3HHeJ_T0046143.1 MGP_C3HHeJ_G0023151.1 mouse_genomes_project 17 26775323 26835603 - MGP_C3HHeJ_P0046143 D17Wsu92e protein_coding protein_coding MGP_C3HHeJ_T0045100.1 MGP_C3HHeJ_G0022833.1 mouse_genomes_project 17 723720 785555 - MGP_C3HHeJ_P0045100 Nox3 protein_coding protein_coding MGP_C3HHeJ_T0010143.1 MGP_C3HHeJ_G0008276.1 mouse_genomes_project 17 93190330 93190436 + Gm24510 miRNA miRNA MGP_C3HHeJ_T0047620.1 MGP_C3HHeJ_G0023539.1 mouse_genomes_project 17 47384447 47415994 + MGP_C3HHeJ_P0047620 Zfp318 protein_coding protein_coding MGP_C3HHeJ_T0047621.1 MGP_C3HHeJ_G0023539.1 mouse_genomes_project 17 47384467 47422097 + MGP_C3HHeJ_P0047621 Zfp318 protein_coding protein_coding MGP_C3HHeJ_T0047622.1 MGP_C3HHeJ_G0023539.1 mouse_genomes_project 17 47401254 47411898 + MGP_C3HHeJ_P0047622 Zfp318 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047623.1 MGP_C3HHeJ_G0023539.1 mouse_genomes_project 17 47407057 47410541 + Zfp318 protein_coding retained_intron MGP_C3HHeJ_T0047624.1 MGP_C3HHeJ_G0023539.1 mouse_genomes_project 17 47410808 47412501 + Zfp318 protein_coding retained_intron MGP_C3HHeJ_T0046461.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31640722 31677224 - MGP_C3HHeJ_P0046461 Brd4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046462.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31641815 31733814 - MGP_C3HHeJ_P0046462 Brd4 protein_coding protein_coding MGP_C3HHeJ_T0046463.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31641815 31733807 - MGP_C3HHeJ_P0046463 Brd4 protein_coding protein_coding MGP_C3HHeJ_T0046464.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31641817 31733807 - MGP_C3HHeJ_P0046464 Brd4 protein_coding protein_coding MGP_C3HHeJ_T0046465.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31650451 31733814 - MGP_C3HHeJ_P0046465 Brd4 protein_coding protein_coding MGP_C3HHeJ_T0046466.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31652222 31733827 - MGP_C3HHeJ_P0046466 Brd4 protein_coding protein_coding MGP_C3HHeJ_T0046467.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31659022 31734963 - MGP_C3HHeJ_P0046467 Brd4 protein_coding protein_coding MGP_C3HHeJ_T0046468.1 MGP_C3HHeJ_G0023224.1 mouse_genomes_project 17 31659057 31734918 - MGP_C3HHeJ_P0046468 Brd4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047063.1 MGP_C3HHeJ_G0023357.1 mouse_genomes_project 17 35076595 35091484 - MGP_C3HHeJ_P0047063 Nfkbil1 protein_coding protein_coding MGP_C3HHeJ_T0047065.1 MGP_C3HHeJ_G0023357.1 mouse_genomes_project 17 35077255 35078076 - Nfkbil1 protein_coding processed_transcript MGP_C3HHeJ_T0046915.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34729340 34746427 + MGP_C3HHeJ_P0046915 Ehmt2 protein_coding protein_coding MGP_C3HHeJ_T0046916.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34729370 34746423 + MGP_C3HHeJ_P0046916 Ehmt2 protein_coding protein_coding MGP_C3HHeJ_T0046917.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34729825 34746420 + MGP_C3HHeJ_P0046917 Ehmt2 protein_coding protein_coding MGP_C3HHeJ_T0046918.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34729842 34746427 + MGP_C3HHeJ_P0046918 Ehmt2 protein_coding protein_coding MGP_C3HHeJ_T0046919.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34730565 34735009 + Ehmt2 protein_coding processed_transcript MGP_C3HHeJ_T0046920.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34737588 34738637 + Ehmt2 protein_coding retained_intron MGP_C3HHeJ_T0046921.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34737625 34738426 + Ehmt2 protein_coding retained_intron MGP_C3HHeJ_T0046922.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34738295 34739011 + Ehmt2 protein_coding retained_intron MGP_C3HHeJ_T0046923.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34738387 34740944 + MGP_C3HHeJ_P0046923 Ehmt2 protein_coding protein_coding MGP_C3HHeJ_T0046924.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34739129 34740829 + Ehmt2 protein_coding processed_transcript MGP_C3HHeJ_T0046925.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34739783 34746423 + MGP_C3HHeJ_P0046925 Ehmt2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046926.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34739785 34741188 + MGP_C3HHeJ_P0046926 Ehmt2 protein_coding protein_coding MGP_C3HHeJ_T0046927.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34741030 34743888 + Ehmt2 protein_coding retained_intron MGP_C3HHeJ_T0046928.1 MGP_C3HHeJ_G0023324.1 mouse_genomes_project 17 34743360 34746428 + Ehmt2 protein_coding retained_intron MGP_C3HHeJ_T0048253.1 MGP_C3HHeJ_G0023749.1 mouse_genomes_project 17 76571212 76587844 - MGP_C3HHeJ_P0048253 Dpy30 protein_coding unknown_likely_coding MGP_C3HHeJ_T0000960.1 MGP_C3HHeJ_G0000897.1 mouse_genomes_project 17 53177970 53181223 + TEC TEC MGP_C3HHeJ_T0047449.1 MGP_C3HHeJ_G0023500.1 mouse_genomes_project 17 44295434 44324605 - MGP_C3HHeJ_P0047449 protein_coding protein_coding MGP_C3HHeJ_T0047450.1 MGP_C3HHeJ_G0023500.1 mouse_genomes_project 17 44295441 44324566 - MGP_C3HHeJ_P0047450 protein_coding protein_coding MGP_C3HHeJ_T0047451.1 MGP_C3HHeJ_G0023500.1 mouse_genomes_project 17 44319676 44322263 - protein_coding processed_transcript MGP_C3HHeJ_T0047452.1 MGP_C3HHeJ_G0023500.1 mouse_genomes_project 17 44324036 44324526 - protein_coding retained_intron MGP_C3HHeJ_T0045706.1 MGP_C3HHeJ_G0023049.1 mouse_genomes_project 17 23663013 23664419 - MGP_C3HHeJ_P0045706 Fahd1 protein_coding protein_coding MGP_C3HHeJ_T0000961.1 MGP_C3HHeJ_G0000898.1 mouse_genomes_project 17 53185334 53187396 + TEC TEC MGP_C3HHeJ_T0046395.1 MGP_C3HHeJ_G0023211.1 mouse_genomes_project 17 30664534 30722778 + MGP_C3HHeJ_P0046395 Slc37a1 protein_coding protein_coding MGP_C3HHeJ_T0046396.1 MGP_C3HHeJ_G0023211.1 mouse_genomes_project 17 30665270 30722778 + MGP_C3HHeJ_P0046396 Slc37a1 protein_coding protein_coding MGP_C3HHeJ_T0046233.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27685667 27724168 - MGP_C3HHeJ_P0046233 Srpk1 protein_coding protein_coding MGP_C3HHeJ_T0046234.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27687657 27705917 - MGP_C3HHeJ_P0046234 Srpk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046235.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27688055 27690492 - Srpk1 protein_coding retained_intron MGP_C3HHeJ_T0046236.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27693534 27699935 - Srpk1 protein_coding retained_intron MGP_C3HHeJ_T0046237.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27699384 27700312 - Srpk1 protein_coding retained_intron MGP_C3HHeJ_T0046238.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27701595 27724098 - Srpk1 protein_coding retained_intron MGP_C3HHeJ_T0046239.1 MGP_C3HHeJ_G0023170.1 mouse_genomes_project 17 27721789 27724119 - MGP_C3HHeJ_P0046239 Srpk1 protein_coding protein_coding MGP_C3HHeJ_T0101846.1 MGP_C3HHeJ_G0039811.1 mouse_genomes_project 17 37432783 37434175 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099074.1 MGP_C3HHeJ_G0037268.1 mouse_genomes_project 17 13602555 13602662 - Gm25598 snRNA snRNA MGP_C3HHeJ_T0046554.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33011335 33041572 + MGP_C3HHeJ_P0046554 Adamts10 protein_coding protein_coding MGP_C3HHeJ_T0046555.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33011335 33041572 + MGP_C3HHeJ_P0046555 Adamts10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046556.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33011340 33041571 + MGP_C3HHeJ_P0046556 Adamts10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046557.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33011341 33016279 + Adamts10 protein_coding retained_intron MGP_C3HHeJ_T0046558.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33011357 33041572 + MGP_C3HHeJ_P0046558 Adamts10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046559.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33015428 33041252 + MGP_C3HHeJ_P0046559 Adamts10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046560.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33015428 33041252 + MGP_C3HHeJ_P0046560 Adamts10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046561.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33018773 33041571 + MGP_C3HHeJ_P0046561 Adamts10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046562.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33018882 33030692 + Adamts10 protein_coding processed_transcript MGP_C3HHeJ_T0046563.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33024499 33041572 + Adamts10 protein_coding retained_intron MGP_C3HHeJ_T0046564.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33024882 33041574 + Adamts10 protein_coding retained_intron MGP_C3HHeJ_T0046565.1 MGP_C3HHeJ_G0023255.1 mouse_genomes_project 17 33030992 33041586 + Adamts10 protein_coding retained_intron MGP_C3HHeJ_T0048415.1 MGP_C3HHeJ_G0023816.1 mouse_genomes_project 17 88897744 89401399 + MGP_C3HHeJ_P0048415 Prkce protein_coding protein_coding MGP_C3HHeJ_T0048416.1 MGP_C3HHeJ_G0023816.1 mouse_genomes_project 17 88897778 88907474 + MGP_C3HHeJ_P0048416 Prkce protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048417.1 MGP_C3HHeJ_G0023816.1 mouse_genomes_project 17 88898133 89398892 + MGP_C3HHeJ_P0048417 Prkce protein_coding protein_coding MGP_C3HHeJ_T0048418.1 MGP_C3HHeJ_G0023816.1 mouse_genomes_project 17 89233808 89239376 + Prkce protein_coding retained_intron MGP_C3HHeJ_T0048419.1 MGP_C3HHeJ_G0023816.1 mouse_genomes_project 17 89236596 89239721 + Prkce protein_coding retained_intron MGP_C3HHeJ_T0010127.1 MGP_C3HHeJ_G0008260.1 mouse_genomes_project 17 47208156 47208245 + Mir693 miRNA miRNA MGP_C3HHeJ_T0047475.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45382733 45632361 - MGP_C3HHeJ_P0047475 Runx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047476.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45496873 45724145 - MGP_C3HHeJ_P0047476 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047477.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45496873 45632833 - MGP_C3HHeJ_P0047477 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047478.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45499132 45631895 - MGP_C3HHeJ_P0047478 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047479.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45500403 45723929 - MGP_C3HHeJ_P0047479 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047480.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45500691 45631819 - MGP_C3HHeJ_P0047480 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047481.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45500691 45723574 - MGP_C3HHeJ_P0047481 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047482.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45500777 45723975 - MGP_C3HHeJ_P0047482 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047483.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45500873 45724145 - MGP_C3HHeJ_P0047483 Runx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047484.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45501187 45631551 - MGP_C3HHeJ_P0047484 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047485.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45531474 45631819 - MGP_C3HHeJ_P0047485 Runx2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047486.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45533433 45630878 - MGP_C3HHeJ_P0047486 Runx2 protein_coding protein_coding MGP_C3HHeJ_T0047487.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45533529 45723612 - MGP_C3HHeJ_P0047487 Runx2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047492.1 MGP_C3HHeJ_G0023510.1 mouse_genomes_project 17 45723253 45723975 - Runx2 protein_coding retained_intron MGP_C3HHeJ_T0017339.1 MGP_C3HHeJ_G0015107.1 mouse_genomes_project 17 29083057 29089971 + Gm16758 processed_transcript processed_transcript MGP_C3HHeJ_T0047613.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47282394 47311251 - MGP_C3HHeJ_P0047613 Abcc10 protein_coding protein_coding MGP_C3HHeJ_T0047614.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47282403 47311204 - MGP_C3HHeJ_P0047614 Abcc10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047615.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47282406 47311207 - MGP_C3HHeJ_P0047615 Abcc10 protein_coding protein_coding MGP_C3HHeJ_T0047616.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47282594 47309004 - MGP_C3HHeJ_P0047616 Abcc10 protein_coding protein_coding MGP_C3HHeJ_T0047617.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47292998 47306870 - MGP_C3HHeJ_P0047617 Abcc10 protein_coding protein_coding MGP_C3HHeJ_T0047618.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47306095 47311225 - Abcc10 protein_coding retained_intron MGP_C3HHeJ_T0047619.1 MGP_C3HHeJ_G0023538.1 mouse_genomes_project 17 47307794 47311580 - Abcc10 protein_coding processed_transcript MGP_C3HHeJ_T0046737.1 MGP_C3HHeJ_G0023287.1 mouse_genomes_project 17 33757662 33763427 - MGP_C3HHeJ_P0046737 Psmb9 protein_coding protein_coding MGP_C3HHeJ_T0046738.1 MGP_C3HHeJ_G0023287.1 mouse_genomes_project 17 33757704 33759222 - Psmb9 protein_coding retained_intron MGP_C3HHeJ_T0046739.1 MGP_C3HHeJ_G0023287.1 mouse_genomes_project 17 33757707 33763016 - Psmb9 protein_coding retained_intron MGP_C3HHeJ_T0046740.1 MGP_C3HHeJ_G0023287.1 mouse_genomes_project 17 33757840 33761461 - MGP_C3HHeJ_P0046740 Psmb9 protein_coding protein_coding MGP_C3HHeJ_T0046741.1 MGP_C3HHeJ_G0023287.1 mouse_genomes_project 17 33759702 33763001 - Psmb9 protein_coding retained_intron MGP_C3HHeJ_T0046742.1 MGP_C3HHeJ_G0023287.1 mouse_genomes_project 17 33759954 33762882 - MGP_C3HHeJ_P0046742 Psmb9 protein_coding protein_coding MGP_C3HHeJ_T0045298.1 MGP_C3HHeJ_G0022893.1 mouse_genomes_project 17 12009569 12137232 + MGP_C3HHeJ_P0045298 Smoc2 protein_coding protein_coding MGP_C3HHeJ_T0003633.1 MGP_C3HHeJ_G0003284.1 mouse_genomes_project 17 4302280 4307200 + antisense antisense MGP_C3HHeJ_T0048139.1 MGP_C3HHeJ_G0023716.1 mouse_genomes_project 17 69865627 70035397 - MGP_C3HHeJ_P0048139 Arhgap28 protein_coding protein_coding MGP_C3HHeJ_T0048140.1 MGP_C3HHeJ_G0023716.1 mouse_genomes_project 17 69868649 69927523 - MGP_C3HHeJ_P0048140 Arhgap28 protein_coding protein_coding MGP_C3HHeJ_T0048141.1 MGP_C3HHeJ_G0023716.1 mouse_genomes_project 17 69882089 69898909 - MGP_C3HHeJ_P0048141 Arhgap28 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048142.1 MGP_C3HHeJ_G0023716.1 mouse_genomes_project 17 69894814 69921343 - MGP_C3HHeJ_P0048142 Arhgap28 protein_coding protein_coding MGP_C3HHeJ_T0006893.1 MGP_C3HHeJ_G0005665.1 mouse_genomes_project 17 72833166 72844955 - 5031415H12Rik lincRNA lincRNA MGP_C3HHeJ_T0048005.1 MGP_C3HHeJ_G0023662.1 mouse_genomes_project 17 58327180 58329139 + Prr22 protein_coding retained_intron MGP_C3HHeJ_T0048006.1 MGP_C3HHeJ_G0023662.1 mouse_genomes_project 17 58327206 58329065 + MGP_C3HHeJ_P0048006 Prr22 protein_coding protein_coding MGP_C3HHeJ_T0047252.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36248332 36252979 - MGP_C3HHeJ_P0047252 H2-T3 protein_coding protein_coding MGP_C3HHeJ_T0047253.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36248333 36253046 - MGP_C3HHeJ_P0047253 H2-T3 protein_coding protein_coding MGP_C3HHeJ_T0047254.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36248437 36253010 - H2-T3 protein_coding retained_intron MGP_C3HHeJ_T0047255.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36249334 36252881 - H2-T3 protein_coding retained_intron MGP_C3HHeJ_T0047256.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36249334 36252881 - MGP_C3HHeJ_P0047256 H2-T3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047257.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36249334 36252881 - MGP_C3HHeJ_P0047257 H2-T3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047258.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36249337 36252881 - MGP_C3HHeJ_P0047258 H2-T3 protein_coding protein_coding MGP_C3HHeJ_T0047259.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36249346 36252881 - MGP_C3HHeJ_P0047259 H2-T3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047260.1 MGP_C3HHeJ_G0023396.1 mouse_genomes_project 17 36249346 36252881 - MGP_C3HHeJ_P0047260 H2-T3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045571.1 MGP_C3HHeJ_G0023015.1 mouse_genomes_project 17 22913764 22945572 - MGP_C3HHeJ_P0045571 Gm43796 protein_coding protein_coding MGP_C3HHeJ_T0046072.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25880262 25913208 + MGP_C3HHeJ_P0046072 Syngap1 protein_coding protein_coding MGP_C3HHeJ_T0046073.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25880451 25911465 + MGP_C3HHeJ_P0046073 Syngap1 protein_coding protein_coding MGP_C3HHeJ_T0046074.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25880461 25911425 + MGP_C3HHeJ_P0046074 Syngap1 protein_coding protein_coding MGP_C3HHeJ_T0046075.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25880508 25912005 + MGP_C3HHeJ_P0046075 Syngap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046076.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25891895 25911817 + MGP_C3HHeJ_P0046076 Syngap1 protein_coding protein_coding MGP_C3HHeJ_T0046077.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25897160 25913208 + MGP_C3HHeJ_P0046077 Syngap1 protein_coding protein_coding MGP_C3HHeJ_T0046078.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25897616 25899902 + MGP_C3HHeJ_P0046078 Syngap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046079.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25899628 25900346 + Syngap1 protein_coding retained_intron MGP_C3HHeJ_T0046080.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25902096 25911446 + MGP_C3HHeJ_P0046080 Syngap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046081.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25902802 25911475 + MGP_C3HHeJ_P0046081 Syngap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046082.1 MGP_C3HHeJ_G0023135.1 mouse_genomes_project 17 25902816 25911471 + MGP_C3HHeJ_P0046082 Syngap1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046775.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 33993113 34057851 + MGP_C3HHeJ_P0046775 BC051142 protein_coding protein_coding MGP_C3HHeJ_T0046776.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 33993114 34012595 + BC051142 protein_coding processed_transcript MGP_C3HHeJ_T0046777.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 33993114 34057851 + MGP_C3HHeJ_P0046777 BC051142 protein_coding protein_coding MGP_C3HHeJ_T0046778.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 33993114 34041907 + MGP_C3HHeJ_P0046778 BC051142 protein_coding protein_coding MGP_C3HHeJ_T0046779.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 33993115 34015701 + BC051142 protein_coding retained_intron MGP_C3HHeJ_T0046780.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 33993134 34057851 + MGP_C3HHeJ_P0046780 BC051142 protein_coding protein_coding MGP_C3HHeJ_T0046781.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 34011979 34036253 + MGP_C3HHeJ_P0046781 BC051142 protein_coding protein_coding MGP_C3HHeJ_T0046782.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 34012590 34032498 + BC051142 protein_coding processed_transcript MGP_C3HHeJ_T0046783.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 34012612 34016458 + MGP_C3HHeJ_P0046783 BC051142 protein_coding protein_coding MGP_C3HHeJ_T0046784.1 MGP_C3HHeJ_G0023299.1 mouse_genomes_project 17 34012647 34057852 + MGP_C3HHeJ_P0046784 BC051142 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045863.1 MGP_C3HHeJ_G0023084.1 mouse_genomes_project 17 24575635 24577871 + MGP_C3HHeJ_P0045863 Gng13 protein_coding protein_coding MGP_C3HHeJ_T0045864.1 MGP_C3HHeJ_G0023084.1 mouse_genomes_project 17 24575992 24577552 + MGP_C3HHeJ_P0045864 Gng13 protein_coding protein_coding MGP_C3HHeJ_T0046293.1 MGP_C3HHeJ_G0023181.1 mouse_genomes_project 17 28230406 28238848 + MGP_C3HHeJ_P0046293 Cdkn1a protein_coding protein_coding MGP_C3HHeJ_T0046294.1 MGP_C3HHeJ_G0023181.1 mouse_genomes_project 17 28233192 28240043 + MGP_C3HHeJ_P0046294 Cdkn1a protein_coding protein_coding MGP_C3HHeJ_T0046295.1 MGP_C3HHeJ_G0023181.1 mouse_genomes_project 17 28237543 28238890 + MGP_C3HHeJ_P0046295 Cdkn1a protein_coding protein_coding MGP_C3HHeJ_T0101152.1 MGP_C3HHeJ_G0039311.1 mouse_genomes_project 17 24765500 24767082 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101153.1 MGP_C3HHeJ_G0039311.1 mouse_genomes_project 17 24765506 24765697 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0046638.1 MGP_C3HHeJ_G0023269.1 mouse_genomes_project 17 33449439 33450639 + MGP_C3HHeJ_P0046638 Zbtb22 protein_coding protein_coding MGP_C3HHeJ_T0046639.1 MGP_C3HHeJ_G0023269.1 mouse_genomes_project 17 33449706 33452821 + MGP_C3HHeJ_P0046639 Zbtb22 protein_coding protein_coding MGP_C3HHeJ_T0045254.1 MGP_C3HHeJ_G0022884.1 mouse_genomes_project 17 10492955 10497760 - MGP_C3HHeJ_P0045254 Mrpl18 protein_coding protein_coding MGP_C3HHeJ_T0045255.1 MGP_C3HHeJ_G0022884.1 mouse_genomes_project 17 10495451 10497039 - Mrpl18 protein_coding processed_transcript MGP_C3HHeJ_T0045256.1 MGP_C3HHeJ_G0022884.1 mouse_genomes_project 17 10495556 10497518 - Mrpl18 protein_coding retained_intron MGP_C3HHeJ_T0045257.1 MGP_C3HHeJ_G0022884.1 mouse_genomes_project 17 10495600 10497617 - Mrpl18 protein_coding processed_transcript MGP_C3HHeJ_T0045258.1 MGP_C3HHeJ_G0022884.1 mouse_genomes_project 17 10496916 10497484 - Mrpl18 protein_coding retained_intron MGP_C3HHeJ_T0006841.1 MGP_C3HHeJ_G0005630.1 mouse_genomes_project 17 28248707 28272777 + Gm16194 lincRNA lincRNA MGP_C3HHeJ_T0006842.1 MGP_C3HHeJ_G0005630.1 mouse_genomes_project 17 28248732 28272783 + Gm16194 lincRNA lincRNA MGP_C3HHeJ_T0006843.1 MGP_C3HHeJ_G0005630.1 mouse_genomes_project 17 28248743 28258476 + Gm16194 lincRNA lincRNA MGP_C3HHeJ_T0006844.1 MGP_C3HHeJ_G0005630.1 mouse_genomes_project 17 28248761 28272895 + Gm16194 lincRNA lincRNA MGP_C3HHeJ_T0010085.1 MGP_C3HHeJ_G0008218.1 mouse_genomes_project 17 15773886 15773956 + Mir99b miRNA miRNA MGP_C3HHeJ_T0045215.1 MGP_C3HHeJ_G0022870.1 mouse_genomes_project 17 7178944 7182152 - MGP_C3HHeJ_P0045215 Pabpc6 protein_coding protein_coding MGP_C3HHeJ_T0048353.1 MGP_C3HHeJ_G0023786.1 mouse_genomes_project 17 82872060 82872384 - MGP_C3HHeJ_P0048353 Gm10190 protein_coding protein_coding MGP_C3HHeJ_T0013134.1 MGP_C3HHeJ_G0011238.1 mouse_genomes_project 17 55325768 55326895 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047944.1 MGP_C3HHeJ_G0023645.1 mouse_genomes_project 17 57777117 57789423 - MGP_C3HHeJ_P0047944 Plin3 protein_coding protein_coding MGP_C3HHeJ_T0100354.1 MGP_C3HHeJ_G0038548.1 mouse_genomes_project 17 75404199 75404304 + Gm25406 snoRNA snoRNA MGP_C3HHeJ_T0047941.1 MGP_C3HHeJ_G0023642.1 mouse_genomes_project 17 57661578 57694752 - MGP_C3HHeJ_P0047941 Dpp9 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045999.1 MGP_C3HHeJ_G0023117.1 mouse_genomes_project 17 25090498 25093587 - MGP_C3HHeJ_P0045999 Pdia2 protein_coding protein_coding MGP_C3HHeJ_T0046000.1 MGP_C3HHeJ_G0023117.1 mouse_genomes_project 17 25090505 25091416 - MGP_C3HHeJ_P0046000 Pdia2 protein_coding protein_coding MGP_C3HHeJ_T0046001.1 MGP_C3HHeJ_G0023117.1 mouse_genomes_project 17 25090524 25093562 - MGP_C3HHeJ_P0046001 Pdia2 protein_coding protein_coding MGP_C3HHeJ_T0046003.1 MGP_C3HHeJ_G0023117.1 mouse_genomes_project 17 25091993 25093508 - MGP_C3HHeJ_P0046003 Pdia2 protein_coding protein_coding MGP_C3HHeJ_T0047705.1 MGP_C3HHeJ_G0023570.1 mouse_genomes_project 17 48512810 48545814 + MGP_C3HHeJ_P0047705 AI661453 protein_coding protein_coding MGP_C3HHeJ_T0047706.1 MGP_C3HHeJ_G0023570.1 mouse_genomes_project 17 48513000 48546308 + MGP_C3HHeJ_P0047706 AI661453 protein_coding protein_coding MGP_C3HHeJ_T0045601.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120682 23170004 + Abca3 protein_coding retained_intron MGP_C3HHeJ_T0045602.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120755 23183842 + MGP_C3HHeJ_P0045602 Abca3 protein_coding protein_coding MGP_C3HHeJ_T0045603.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120778 23183842 + MGP_C3HHeJ_P0045603 Abca3 protein_coding protein_coding MGP_C3HHeJ_T0045604.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120821 23173184 + Abca3 protein_coding retained_intron MGP_C3HHeJ_T0045605.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120821 23146288 + Abca3 protein_coding retained_intron MGP_C3HHeJ_T0045606.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120833 23129653 + Abca3 protein_coding processed_transcript MGP_C3HHeJ_T0045607.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23120838 23152983 + Abca3 protein_coding retained_intron MGP_C3HHeJ_T0045608.1 MGP_C3HHeJ_G0023021.1 mouse_genomes_project 17 23133230 23183842 + MGP_C3HHeJ_P0045608 Abca3 protein_coding protein_coding MGP_C3HHeJ_T0046588.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33177138 33210094 - MGP_C3HHeJ_P0046588 March2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046589.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33177158 33210069 - MGP_C3HHeJ_P0046589 March2 protein_coding protein_coding MGP_C3HHeJ_T0046590.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33177259 33210069 - MGP_C3HHeJ_P0046590 March2 protein_coding protein_coding MGP_C3HHeJ_T0046591.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33182953 33210064 - MGP_C3HHeJ_P0046591 March2 protein_coding protein_coding MGP_C3HHeJ_T0046592.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33182953 33210077 - MGP_C3HHeJ_P0046592 March2 protein_coding protein_coding MGP_C3HHeJ_T0046593.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33183277 33194647 - MGP_C3HHeJ_P0046593 March2 protein_coding protein_coding MGP_C3HHeJ_T0046594.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33185659 33210081 - MGP_C3HHeJ_P0046594 March2 protein_coding protein_coding MGP_C3HHeJ_T0046595.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33187468 33210015 - MGP_C3HHeJ_P0046595 March2 protein_coding protein_coding MGP_C3HHeJ_T0046596.1 MGP_C3HHeJ_G0023260.1 mouse_genomes_project 17 33194584 33204755 - MGP_C3HHeJ_P0046596 March2 protein_coding protein_coding MGP_C3HHeJ_T0101789.1 MGP_C3HHeJ_G0039754.1 mouse_genomes_project 17 18136627 18172293 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045983.1 MGP_C3HHeJ_G0023112.1 mouse_genomes_project 17 24966444 24975939 - MGP_C3HHeJ_P0045983 Decr2 protein_coding protein_coding MGP_C3HHeJ_T0045984.1 MGP_C3HHeJ_G0023112.1 mouse_genomes_project 17 24968539 24969572 - Decr2 protein_coding processed_transcript MGP_C3HHeJ_T0045985.1 MGP_C3HHeJ_G0023112.1 mouse_genomes_project 17 24969288 24975939 - Decr2 protein_coding retained_intron MGP_C3HHeJ_T0045986.1 MGP_C3HHeJ_G0023112.1 mouse_genomes_project 17 24969745 24975929 - Decr2 protein_coding processed_transcript MGP_C3HHeJ_T0045987.1 MGP_C3HHeJ_G0023112.1 mouse_genomes_project 17 24973063 24975968 - Decr2 protein_coding processed_transcript MGP_C3HHeJ_T0045220.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 8378632 9112060 + Park2 protein_coding retained_intron MGP_C3HHeJ_T0045221.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 8378632 9112060 + Park2 protein_coding retained_intron MGP_C3HHeJ_T0045222.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 8378632 9622459 + MGP_C3HHeJ_P0045222 Park2 protein_coding protein_coding MGP_C3HHeJ_T0045223.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 8378639 8491655 + Park2 protein_coding processed_transcript MGP_C3HHeJ_T0045224.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 8598218 9048788 + MGP_C3HHeJ_P0045224 Park2 protein_coding protein_coding MGP_C3HHeJ_T0045225.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 8844852 9167166 + MGP_C3HHeJ_P0045225 Park2 protein_coding protein_coding MGP_C3HHeJ_T0045226.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 9395707 9424667 + MGP_C3HHeJ_P0045226 Park2 protein_coding protein_coding MGP_C3HHeJ_T0045227.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 9402305 9424667 + Park2 protein_coding processed_transcript MGP_C3HHeJ_T0045228.1 MGP_C3HHeJ_G0022873.1 mouse_genomes_project 17 9589066 9622454 + Park2 protein_coding processed_transcript MGP_C3HHeJ_T0048331.1 MGP_C3HHeJ_G0023776.1 mouse_genomes_project 17 82169642 82177708 - MGP_C3HHeJ_P0048331 Cyp1b1 protein_coding protein_coding MGP_C3HHeJ_T0048361.1 MGP_C3HHeJ_G0023792.1 mouse_genomes_project 17 83546371 83586747 - MGP_C3HHeJ_P0048361 Thumpd2 protein_coding protein_coding MGP_C3HHeJ_T0045670.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23500296 23504601 + MGP_C3HHeJ_P0045670 Noxo1 protein_coding protein_coding MGP_C3HHeJ_T0045672.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502094 23502427 + Noxo1 protein_coding processed_transcript MGP_C3HHeJ_T0045673.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502247 23503474 + Noxo1 protein_coding processed_transcript MGP_C3HHeJ_T0045674.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502304 23504597 + Noxo1 protein_coding retained_intron MGP_C3HHeJ_T0045675.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502310 23504385 + Noxo1 protein_coding retained_intron MGP_C3HHeJ_T0045676.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502383 23503238 + Noxo1 protein_coding retained_intron MGP_C3HHeJ_T0045677.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502412 23503750 + Noxo1 protein_coding processed_transcript MGP_C3HHeJ_T0045678.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23502597 23504596 + Noxo1 protein_coding processed_transcript MGP_C3HHeJ_T0045679.1 MGP_C3HHeJ_G0023040.1 mouse_genomes_project 17 23503464 23504588 + Noxo1 protein_coding processed_transcript MGP_C3HHeJ_T0048360.1 MGP_C3HHeJ_G0023791.1 mouse_genomes_project 17 83462456 83521911 + MGP_C3HHeJ_P0048360 Tmem178 protein_coding protein_coding MGP_C3HHeJ_T0047904.1 MGP_C3HHeJ_G0023626.1 mouse_genomes_project 17 57414772 57419171 + MGP_C3HHeJ_P0047904 Ebi3 protein_coding protein_coding MGP_C3HHeJ_T0006909.1 MGP_C3HHeJ_G0005677.1 mouse_genomes_project 17 90317465 90329064 + Gm28676 lincRNA lincRNA MGP_C3HHeJ_T0046088.1 MGP_C3HHeJ_G0023138.1 mouse_genomes_project 17 25969490 25978457 - MGP_C3HHeJ_P0046088 Bak1 protein_coding protein_coding MGP_C3HHeJ_T0046089.1 MGP_C3HHeJ_G0023138.1 mouse_genomes_project 17 25969492 25978026 - MGP_C3HHeJ_P0046089 Bak1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046090.1 MGP_C3HHeJ_G0023138.1 mouse_genomes_project 17 25970346 25972430 - MGP_C3HHeJ_P0046090 Bak1 protein_coding protein_coding MGP_C3HHeJ_T0046091.1 MGP_C3HHeJ_G0023138.1 mouse_genomes_project 17 25972219 25978035 - Bak1 protein_coding processed_transcript MGP_C3HHeJ_T0048344.1 MGP_C3HHeJ_G0023781.1 mouse_genomes_project 17 82698060 82709580 + MGP_C3HHeJ_P0048344 Ttc39d protein_coding protein_coding MGP_C3HHeJ_T0048345.1 MGP_C3HHeJ_G0023781.1 mouse_genomes_project 17 82707557 82709579 + MGP_C3HHeJ_P0048345 Ttc39d protein_coding protein_coding MGP_C3HHeJ_T0045448.1 MGP_C3HHeJ_G0022971.1 mouse_genomes_project 17 20900990 20926105 - MGP_C3HHeJ_P0045448 Zfp944 protein_coding protein_coding MGP_C3HHeJ_T0045850.1 MGP_C3HHeJ_G0023082.1 mouse_genomes_project 17 24418935 24423706 - MGP_C3HHeJ_P0045850 Sox8 protein_coding protein_coding MGP_C3HHeJ_T0045851.1 MGP_C3HHeJ_G0023082.1 mouse_genomes_project 17 24421016 24423234 - MGP_C3HHeJ_P0045851 Sox8 protein_coding protein_coding MGP_C3HHeJ_T0045852.1 MGP_C3HHeJ_G0023082.1 mouse_genomes_project 17 24421729 24423706 - MGP_C3HHeJ_P0045852 Sox8 protein_coding protein_coding MGP_C3HHeJ_T0047965.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58093949 58097501 - MGP_C3HHeJ_P0047965 Safb2 protein_coding protein_coding MGP_C3HHeJ_T0047966.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58093957 58097552 - MGP_C3HHeJ_P0047966 Safb2 protein_coding protein_coding MGP_C3HHeJ_T0047967.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58095923 58125859 - MGP_C3HHeJ_P0047967 Safb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047968.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58095923 58125932 - MGP_C3HHeJ_P0047968 Safb2 protein_coding protein_coding MGP_C3HHeJ_T0047969.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58095923 58100000 - MGP_C3HHeJ_P0047969 Safb2 protein_coding protein_coding MGP_C3HHeJ_T0047970.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58095933 58105482 - Safb2 protein_coding processed_transcript MGP_C3HHeJ_T0047971.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58096289 58100003 - MGP_C3HHeJ_P0047971 Safb2 protein_coding protein_coding MGP_C3HHeJ_T0047972.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58098981 58104423 - MGP_C3HHeJ_P0047972 Safb2 protein_coding protein_coding MGP_C3HHeJ_T0047973.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58100517 58102419 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0047974.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58101879 58108081 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0047975.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58101975 58125871 - MGP_C3HHeJ_P0047975 Safb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047976.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58103065 58108748 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0047977.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58104010 58104662 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0047978.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58104252 58125909 - MGP_C3HHeJ_P0047978 Safb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047979.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58117679 58124393 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0047980.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58117808 58125648 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0047981.1 MGP_C3HHeJ_G0023651.1 mouse_genomes_project 17 58120219 58125858 - Safb2 protein_coding retained_intron MGP_C3HHeJ_T0017358.1 MGP_C3HHeJ_G0015114.1 mouse_genomes_project 17 37430270 37432279 + processed_transcript retained_intron MGP_C3HHeJ_T0046542.1 MGP_C3HHeJ_G0023248.1 mouse_genomes_project 17 32638139 32642227 - MGP_C3HHeJ_P0046542 Morc2b protein_coding protein_coding MGP_C3HHeJ_T0046543.1 MGP_C3HHeJ_G0023248.1 mouse_genomes_project 17 32638194 32642043 - MGP_C3HHeJ_P0046543 Morc2b protein_coding protein_coding MGP_C3HHeJ_T0048488.1 MGP_C3HHeJ_G0023840.1 mouse_genomes_project 17 91913573 92131326 - MGP_C3HHeJ_P0048488 Fshr protein_coding protein_coding MGP_C3HHeJ_T0046335.1 MGP_C3HHeJ_G0023192.1 mouse_genomes_project 17 28722966 28782061 + MGP_C3HHeJ_P0046335 Tbc1d22b protein_coding protein_coding MGP_C3HHeJ_T0046336.1 MGP_C3HHeJ_G0023192.1 mouse_genomes_project 17 28745993 28782060 + Tbc1d22b protein_coding retained_intron MGP_C3HHeJ_T0046604.1 MGP_C3HHeJ_G0023263.1 mouse_genomes_project 17 33315073 33327578 + MGP_C3HHeJ_P0046604 Kank3 protein_coding protein_coding MGP_C3HHeJ_T0046605.1 MGP_C3HHeJ_G0023263.1 mouse_genomes_project 17 33315076 33327577 + MGP_C3HHeJ_P0046605 Kank3 protein_coding protein_coding MGP_C3HHeJ_T0046606.1 MGP_C3HHeJ_G0023263.1 mouse_genomes_project 17 33315076 33327574 + MGP_C3HHeJ_P0046606 Kank3 protein_coding protein_coding MGP_C3HHeJ_T0046607.1 MGP_C3HHeJ_G0023263.1 mouse_genomes_project 17 33315082 33326818 + Kank3 protein_coding retained_intron MGP_C3HHeJ_T0046609.1 MGP_C3HHeJ_G0023263.1 mouse_genomes_project 17 33326489 33326935 + Kank3 protein_coding retained_intron MGP_C3HHeJ_T0046610.1 MGP_C3HHeJ_G0023263.1 mouse_genomes_project 17 33326802 33327577 + MGP_C3HHeJ_P0046610 Kank3 protein_coding protein_coding MGP_C3HHeJ_T0048191.1 MGP_C3HHeJ_G0023727.1 mouse_genomes_project 17 73144456 73253446 + MGP_C3HHeJ_P0048191 Myom1 protein_coding protein_coding MGP_C3HHeJ_T0048192.1 MGP_C3HHeJ_G0023727.1 mouse_genomes_project 17 73144503 73253447 + MGP_C3HHeJ_P0048192 Myom1 protein_coding protein_coding MGP_C3HHeJ_T0048193.1 MGP_C3HHeJ_G0023727.1 mouse_genomes_project 17 73144503 73253447 + MGP_C3HHeJ_P0048193 Myom1 protein_coding protein_coding MGP_C3HHeJ_T0101857.1 MGP_C3HHeJ_G0039822.1 mouse_genomes_project 17 38274913 38277663 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101806.1 MGP_C3HHeJ_G0039771.1 mouse_genomes_project 17 25185965 25186664 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006861.1 MGP_C3HHeJ_G0005646.1 mouse_genomes_project 17 35979766 35981644 + Gm20508 lincRNA lincRNA MGP_C3HHeJ_T0047407.1 MGP_C3HHeJ_G0023468.1 mouse_genomes_project 17 38569520 38570460 - MGP_C3HHeJ_P0047407 Olfr137 protein_coding protein_coding MGP_C3HHeJ_T0048112.1 MGP_C3HHeJ_G0023707.1 mouse_genomes_project 17 68024583 68047261 - MGP_C3HHeJ_P0048112 Ndufv2 protein_coding protein_coding MGP_C3HHeJ_T0048113.1 MGP_C3HHeJ_G0023707.1 mouse_genomes_project 17 68024810 68047291 - MGP_C3HHeJ_P0048113 Ndufv2 protein_coding protein_coding MGP_C3HHeJ_T0048114.1 MGP_C3HHeJ_G0023707.1 mouse_genomes_project 17 68032902 68047305 - MGP_C3HHeJ_P0048114 Ndufv2 protein_coding protein_coding MGP_C3HHeJ_T0046905.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34691921 34711503 - MGP_C3HHeJ_P0046905 C2 protein_coding protein_coding MGP_C3HHeJ_T0046906.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34691922 34711577 - MGP_C3HHeJ_P0046906 C2 protein_coding protein_coding MGP_C3HHeJ_T0046907.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34691923 34726452 - MGP_C3HHeJ_P0046907 C2 protein_coding protein_coding MGP_C3HHeJ_T0046908.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34692989 34693730 - MGP_C3HHeJ_P0046908 C2 protein_coding protein_coding MGP_C3HHeJ_T0046909.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34693486 34694270 - C2 protein_coding retained_intron MGP_C3HHeJ_T0046910.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34706519 34711444 - C2 protein_coding processed_transcript MGP_C3HHeJ_T0046912.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34724255 34726462 - C2 protein_coding processed_transcript MGP_C3HHeJ_T0046913.1 MGP_C3HHeJ_G0023322.1 mouse_genomes_project 17 34724258 34729137 - C2 protein_coding processed_transcript MGP_C3HHeJ_T0045805.1 MGP_C3HHeJ_G0023070.1 mouse_genomes_project 17 24077865 24081761 + MGP_C3HHeJ_P0045805 Tsr3 protein_coding protein_coding MGP_C3HHeJ_T0045806.1 MGP_C3HHeJ_G0023070.1 mouse_genomes_project 17 24077948 24081624 + MGP_C3HHeJ_P0045806 Tsr3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010137.1 MGP_C3HHeJ_G0008270.1 mouse_genomes_project 17 67417509 67417659 + Gm25731 miRNA miRNA MGP_C3HHeJ_T0003720.1 MGP_C3HHeJ_G0003344.1 mouse_genomes_project 17 90170605 90172829 - 0610012D04Rik antisense antisense MGP_C3HHeJ_T0046083.1 MGP_C3HHeJ_G0023136.1 mouse_genomes_project 17 25913940 25916979 + MGP_C3HHeJ_P0046083 Zbtb9 protein_coding protein_coding MGP_C3HHeJ_T0046808.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307116 34310187 + MGP_C3HHeJ_P0046808 Ager protein_coding protein_coding MGP_C3HHeJ_T0046809.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307116 34310191 + MGP_C3HHeJ_P0046809 Ager protein_coding protein_coding MGP_C3HHeJ_T0046810.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307129 34310162 + Ager protein_coding processed_transcript MGP_C3HHeJ_T0046811.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307129 34310162 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046812.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310115 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046813.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310115 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046814.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310115 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046815.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310151 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046816.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310115 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046817.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310115 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046818.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310115 + Ager protein_coding retained_intron MGP_C3HHeJ_T0046819.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310151 + MGP_C3HHeJ_P0046819 Ager protein_coding protein_coding MGP_C3HHeJ_T0046820.1 MGP_C3HHeJ_G0023305.1 mouse_genomes_project 17 34307148 34310151 + MGP_C3HHeJ_P0046820 Ager protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0000947.1 MGP_C3HHeJ_G0000885.1 mouse_genomes_project 17 8791172 8796172 + TEC TEC MGP_C3HHeJ_T0045379.1 MGP_C3HHeJ_G0022922.1 mouse_genomes_project 17 17248997 17267350 + MGP_C3HHeJ_P0045379 Vmn2r98 protein_coding protein_coding MGP_C3HHeJ_T0048318.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81397407 81469256 - MGP_C3HHeJ_P0048318 Prkd3 protein_coding protein_coding MGP_C3HHeJ_T0048319.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81397407 81461655 - MGP_C3HHeJ_P0048319 Prkd3 protein_coding protein_coding MGP_C3HHeJ_T0048320.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81398547 81469256 - MGP_C3HHeJ_P0048320 Prkd3 protein_coding protein_coding MGP_C3HHeJ_T0048321.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81399642 81456346 - MGP_C3HHeJ_P0048321 Prkd3 protein_coding protein_coding MGP_C3HHeJ_T0048322.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81417638 81433402 - Prkd3 protein_coding retained_intron MGP_C3HHeJ_T0048323.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81419569 81433402 - MGP_C3HHeJ_P0048323 Prkd3 protein_coding protein_coding MGP_C3HHeJ_T0048324.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81420290 81456529 - Prkd3 protein_coding processed_transcript MGP_C3HHeJ_T0048325.1 MGP_C3HHeJ_G0023771.1 mouse_genomes_project 17 81458469 81469217 - Prkd3 protein_coding retained_intron MGP_C3HHeJ_T0047165.1 MGP_C3HHeJ_G0023380.1 mouse_genomes_project 17 35805047 35809433 - MGP_C3HHeJ_P0047165 Tubb5 protein_coding protein_coding MGP_C3HHeJ_T0047166.1 MGP_C3HHeJ_G0023380.1 mouse_genomes_project 17 35806725 35808181 - Tubb5 protein_coding retained_intron MGP_C3HHeJ_T0047167.1 MGP_C3HHeJ_G0023380.1 mouse_genomes_project 17 35807021 35809335 - MGP_C3HHeJ_P0047167 Tubb5 protein_coding protein_coding MGP_C3HHeJ_T0047168.1 MGP_C3HHeJ_G0023380.1 mouse_genomes_project 17 35807367 35809344 - Tubb5 protein_coding retained_intron MGP_C3HHeJ_T0048343.1 MGP_C3HHeJ_G0023780.1 mouse_genomes_project 17 82690689 82697906 - MGP_C3HHeJ_P0048343 Srsf7 protein_coding protein_coding MGP_C3HHeJ_T0101841.1 MGP_C3HHeJ_G0039806.1 mouse_genomes_project 17 36805301 36806893 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046384.1 MGP_C3HHeJ_G0023205.1 mouse_genomes_project 17 30485376 30489716 - MGP_C3HHeJ_P0046384 Tff3 protein_coding protein_coding MGP_C3HHeJ_T0045893.1 MGP_C3HHeJ_G0023094.1 mouse_genomes_project 17 24669941 24683320 + MGP_C3HHeJ_P0045893 Fbxl16 protein_coding protein_coding MGP_C3HHeJ_T0046044.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25475958 25574258 + MGP_C3HHeJ_P0046044 Ergic1 protein_coding protein_coding MGP_C3HHeJ_T0046045.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25475987 25483365 + Ergic1 protein_coding processed_transcript MGP_C3HHeJ_T0046046.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25476014 25572496 + Ergic1 protein_coding processed_transcript MGP_C3HHeJ_T0046047.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25531042 25551906 + MGP_C3HHeJ_P0046047 Ergic1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046048.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25537923 25572496 + Ergic1 protein_coding processed_transcript MGP_C3HHeJ_T0046049.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25540657 25561156 + Ergic1 protein_coding retained_intron MGP_C3HHeJ_T0046050.1 MGP_C3HHeJ_G0023127.1 mouse_genomes_project 17 25556025 25572674 + MGP_C3HHeJ_P0046050 Ergic1 protein_coding protein_coding MGP_C3HHeJ_T0099086.1 MGP_C3HHeJ_G0037280.1 mouse_genomes_project 17 44277184 44277327 + Gm25135 snRNA snRNA MGP_C3HHeJ_T0010119.1 MGP_C3HHeJ_G0008252.1 mouse_genomes_project 17 35050734 35050812 + Mir6973a miRNA miRNA MGP_C3HHeJ_T0101800.1 MGP_C3HHeJ_G0039765.1 mouse_genomes_project 17 19463752 19464208 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045428.1 MGP_C3HHeJ_G0022962.1 mouse_genomes_project 17 20118406 20136684 + MGP_C3HHeJ_P0045428 Zfp760 protein_coding protein_coding MGP_C3HHeJ_T0047664.1 MGP_C3HHeJ_G0023553.1 mouse_genomes_project 17 47707322 47729820 - MGP_C3HHeJ_P0047664 Ppp2r5d protein_coding protein_coding MGP_C3HHeJ_T0046051.1 MGP_C3HHeJ_G0023128.1 mouse_genomes_project 17 25595348 25619386 + MGP_C3HHeJ_P0046051 Atp6v0e protein_coding protein_coding MGP_C3HHeJ_T0046052.1 MGP_C3HHeJ_G0023128.1 mouse_genomes_project 17 25595364 25617694 + MGP_C3HHeJ_P0046052 Atp6v0e protein_coding protein_coding MGP_C3HHeJ_T0013092.1 MGP_C3HHeJ_G0011196.1 mouse_genomes_project 17 34789489 34789866 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046067.1 MGP_C3HHeJ_G0023131.1 mouse_genomes_project 17 25763886 25766786 - MGP_C3HHeJ_P0046067 Nkx2-5 protein_coding protein_coding MGP_C3HHeJ_T0013074.1 MGP_C3HHeJ_G0011178.1 mouse_genomes_project 17 20415352 20416094 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013073.1 MGP_C3HHeJ_G0011177.1 mouse_genomes_project 17 20411987 20412435 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003689.1 MGP_C3HHeJ_G0003320.1 mouse_genomes_project 17 35875802 35891124 + Gm16279 antisense antisense MGP_C3HHeJ_T0010111.1 MGP_C3HHeJ_G0008244.1 mouse_genomes_project 17 31840577 31840636 + Gm22201 miRNA miRNA MGP_C3HHeJ_T0003634.1 MGP_C3HHeJ_G0003285.1 mouse_genomes_project 17 5287392 5367026 - antisense antisense MGP_C3HHeJ_T0003635.1 MGP_C3HHeJ_G0003285.1 mouse_genomes_project 17 5331546 5364706 - antisense antisense MGP_C3HHeJ_T0003636.1 MGP_C3HHeJ_G0003285.1 mouse_genomes_project 17 5335744 5366952 - antisense antisense MGP_C3HHeJ_T0046897.1 MGP_C3HHeJ_G0023320.1 mouse_genomes_project 17 34685685 34691424 - MGP_C3HHeJ_P0046897 Cfb protein_coding protein_coding MGP_C3HHeJ_T0046898.1 MGP_C3HHeJ_G0023320.1 mouse_genomes_project 17 34685691 34688343 - MGP_C3HHeJ_P0046898 Cfb protein_coding protein_coding MGP_C3HHeJ_T0046899.1 MGP_C3HHeJ_G0023320.1 mouse_genomes_project 17 34685701 34691832 - MGP_C3HHeJ_P0046899 Cfb protein_coding protein_coding MGP_C3HHeJ_T0046900.1 MGP_C3HHeJ_G0023320.1 mouse_genomes_project 17 34685708 34687460 - MGP_C3HHeJ_P0046900 Cfb protein_coding protein_coding MGP_C3HHeJ_T0046901.1 MGP_C3HHeJ_G0023320.1 mouse_genomes_project 17 34685729 34688628 - MGP_C3HHeJ_P0046901 Cfb protein_coding protein_coding MGP_C3HHeJ_T0046904.1 MGP_C3HHeJ_G0023320.1 mouse_genomes_project 17 34685891 34688359 - MGP_C3HHeJ_P0046904 Cfb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046441.1 MGP_C3HHeJ_G0023217.1 mouse_genomes_project 17 31040739 31052535 - MGP_C3HHeJ_P0046441 U2af1 protein_coding protein_coding MGP_C3HHeJ_T0046442.1 MGP_C3HHeJ_G0023217.1 mouse_genomes_project 17 31040739 31052535 - MGP_C3HHeJ_P0046442 U2af1 protein_coding protein_coding MGP_C3HHeJ_T0046333.1 MGP_C3HHeJ_G0023191.1 mouse_genomes_project 17 28695075 28722772 - MGP_C3HHeJ_P0046333 Tmem217 protein_coding protein_coding MGP_C3HHeJ_T0046334.1 MGP_C3HHeJ_G0023191.1 mouse_genomes_project 17 28695075 28722772 - MGP_C3HHeJ_P0046334 Tmem217 protein_coding protein_coding MGP_C3HHeJ_T0101814.1 MGP_C3HHeJ_G0039779.1 mouse_genomes_project 17 34079060 34079215 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048303.1 MGP_C3HHeJ_G0023765.1 mouse_genomes_project 17 81292170 81292930 - protein_coding retained_intron MGP_C3HHeJ_T0048304.1 MGP_C3HHeJ_G0023765.1 mouse_genomes_project 17 81292345 81292804 - protein_coding processed_transcript MGP_C3HHeJ_T0046939.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34819931 34822051 + Lsm2 protein_coding retained_intron MGP_C3HHeJ_T0046940.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34819949 34823961 + MGP_C3HHeJ_P0046940 Lsm2 protein_coding protein_coding MGP_C3HHeJ_T0046941.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34819980 34823741 + Lsm2 protein_coding processed_transcript MGP_C3HHeJ_T0046942.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820190 34823662 + Lsm2 protein_coding processed_transcript MGP_C3HHeJ_T0046943.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820198 34823961 + MGP_C3HHeJ_P0046943 Lsm2 protein_coding protein_coding MGP_C3HHeJ_T0046944.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820228 34823959 + Lsm2 protein_coding processed_transcript MGP_C3HHeJ_T0046945.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820228 34823904 + Lsm2 protein_coding processed_transcript MGP_C3HHeJ_T0046946.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820228 34823959 + MGP_C3HHeJ_P0046946 Lsm2 protein_coding protein_coding MGP_C3HHeJ_T0046947.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820238 34823567 + Lsm2 protein_coding retained_intron MGP_C3HHeJ_T0046948.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34820278 34823567 + Lsm2 protein_coding retained_intron MGP_C3HHeJ_T0046949.1 MGP_C3HHeJ_G0023331.1 mouse_genomes_project 17 34822677 34823960 + Lsm2 protein_coding retained_intron MGP_C3HHeJ_T0047610.1 MGP_C3HHeJ_G0023537.1 mouse_genomes_project 17 47275421 47280180 + MGP_C3HHeJ_P0047610 Dlk2 protein_coding protein_coding MGP_C3HHeJ_T0047611.1 MGP_C3HHeJ_G0023537.1 mouse_genomes_project 17 47275421 47282445 + MGP_C3HHeJ_P0047611 Dlk2 protein_coding protein_coding MGP_C3HHeJ_T0047612.1 MGP_C3HHeJ_G0023537.1 mouse_genomes_project 17 47276063 47282452 + MGP_C3HHeJ_P0047612 Dlk2 protein_coding protein_coding MGP_C3HHeJ_T0101781.1 MGP_C3HHeJ_G0039746.1 mouse_genomes_project 17 16533579 16534859 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010114.1 MGP_C3HHeJ_G0008247.1 mouse_genomes_project 17 33585736 33585796 + Mir219c miRNA miRNA MGP_C3HHeJ_T0003664.1 MGP_C3HHeJ_G0003303.1 mouse_genomes_project 17 28024141 28025645 + 1700030A11Rik antisense antisense MGP_C3HHeJ_T0046382.1 MGP_C3HHeJ_G0023204.1 mouse_genomes_project 17 30414917 30475860 + MGP_C3HHeJ_P0046382 Abcg1 protein_coding protein_coding MGP_C3HHeJ_T0046383.1 MGP_C3HHeJ_G0023204.1 mouse_genomes_project 17 30414993 30458932 + Abcg1 protein_coding retained_intron MGP_C3HHeJ_T0000952.1 MGP_C3HHeJ_G0000889.1 mouse_genomes_project 17 30921589 30925600 - TEC TEC MGP_C3HHeJ_T0003687.1 MGP_C3HHeJ_G0003318.1 mouse_genomes_project 17 35669789 35674218 + Gm4577 antisense antisense MGP_C3HHeJ_T0046687.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33586745 33587812 - H2-Ke6 protein_coding retained_intron MGP_C3HHeJ_T0046688.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33586745 33587469 - H2-Ke6 protein_coding retained_intron MGP_C3HHeJ_T0046689.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33586745 33588774 - MGP_C3HHeJ_P0046689 H2-Ke6 protein_coding protein_coding MGP_C3HHeJ_T0046690.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33586748 33588764 - H2-Ke6 protein_coding retained_intron MGP_C3HHeJ_T0046691.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33586869 33587666 - H2-Ke6 protein_coding retained_intron MGP_C3HHeJ_T0046692.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33587120 33588581 - H2-Ke6 protein_coding processed_transcript MGP_C3HHeJ_T0046693.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33587381 33588778 - MGP_C3HHeJ_P0046693 H2-Ke6 protein_coding protein_coding MGP_C3HHeJ_T0046694.1 MGP_C3HHeJ_G0023279.1 mouse_genomes_project 17 33587627 33588756 - H2-Ke6 protein_coding retained_intron MGP_C3HHeJ_T0098275.1 MGP_C3HHeJ_G0036487.1 mouse_genomes_project 17 4430841 4430929 - Gm22416 scaRNA scaRNA MGP_C3HHeJ_T0046753.1 MGP_C3HHeJ_G0023290.1 mouse_genomes_project 17 33781071 33795332 + MGP_C3HHeJ_P0046753 Tap2 protein_coding protein_coding MGP_C3HHeJ_T0046754.1 MGP_C3HHeJ_G0023290.1 mouse_genomes_project 17 33781625 33782885 + MGP_C3HHeJ_P0046754 Tap2 protein_coding protein_coding MGP_C3HHeJ_T0046755.1 MGP_C3HHeJ_G0023290.1 mouse_genomes_project 17 33782091 33795329 + Tap2 protein_coding retained_intron MGP_C3HHeJ_T0046756.1 MGP_C3HHeJ_G0023290.1 mouse_genomes_project 17 33782624 33783084 + MGP_C3HHeJ_P0046756 Tap2 protein_coding protein_coding MGP_C3HHeJ_T0046757.1 MGP_C3HHeJ_G0023290.1 mouse_genomes_project 17 33786645 33788175 + Tap2 protein_coding processed_transcript MGP_C3HHeJ_T0101852.1 MGP_C3HHeJ_G0039817.1 mouse_genomes_project 17 37589105 37589944 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048057.1 MGP_C3HHeJ_G0023689.1 mouse_genomes_project 17 59346390 59999489 + MGP_C3HHeJ_P0048057 Cntnap5c protein_coding unknown_likely_coding MGP_C3HHeJ_T0048058.1 MGP_C3HHeJ_G0023689.1 mouse_genomes_project 17 59346390 59999489 + MGP_C3HHeJ_P0048058 Cntnap5c protein_coding protein_coding MGP_C3HHeJ_T0006858.1 MGP_C3HHeJ_G0005643.1 mouse_genomes_project 17 35701629 35703705 - Gm20443 lincRNA lincRNA MGP_C3HHeJ_T0046444.1 MGP_C3HHeJ_G0023219.1 mouse_genomes_project 17 31247076 31260316 - MGP_C3HHeJ_P0046444 Sik1 protein_coding protein_coding MGP_C3HHeJ_T0101853.1 MGP_C3HHeJ_G0039818.1 mouse_genomes_project 17 37598505 37599432 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048021.1 MGP_C3HHeJ_G0023672.1 mouse_genomes_project 17 58588143 58598615 - MGP_C3HHeJ_P0048021 Khsrp protein_coding protein_coding MGP_C3HHeJ_T0047688.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48436122 48447096 + MGP_C3HHeJ_P0047688 Mrps10 protein_coding protein_coding MGP_C3HHeJ_T0047689.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48436129 48447490 + MGP_C3HHeJ_P0047689 Mrps10 protein_coding protein_coding MGP_C3HHeJ_T0047690.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48436133 48447492 + MGP_C3HHeJ_P0047690 Mrps10 protein_coding protein_coding MGP_C3HHeJ_T0047691.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48436134 48443989 + Mrps10 protein_coding retained_intron MGP_C3HHeJ_T0047692.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48436135 48443110 + MGP_C3HHeJ_P0047692 Mrps10 protein_coding protein_coding MGP_C3HHeJ_T0047693.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48436140 48444033 + Mrps10 protein_coding retained_intron MGP_C3HHeJ_T0047694.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48438151 48445843 + Mrps10 protein_coding retained_intron MGP_C3HHeJ_T0047695.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48439755 48445863 + Mrps10 protein_coding processed_transcript MGP_C3HHeJ_T0047696.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48440514 48441377 + Mrps10 protein_coding retained_intron MGP_C3HHeJ_T0047697.1 MGP_C3HHeJ_G0023566.1 mouse_genomes_project 17 48443514 48450228 + Mrps10 protein_coding retained_intron MGP_C3HHeJ_T0048130.1 MGP_C3HHeJ_G0023711.1 mouse_genomes_project 17 68455780 68480995 - MGP_C3HHeJ_P0048130 Rab12 protein_coding protein_coding MGP_C3HHeJ_T0048131.1 MGP_C3HHeJ_G0023711.1 mouse_genomes_project 17 68458759 68461620 - Rab12 protein_coding retained_intron MGP_C3HHeJ_T0048132.1 MGP_C3HHeJ_G0023711.1 mouse_genomes_project 17 68461649 68480658 - Rab12 protein_coding processed_transcript MGP_C3HHeJ_T0048133.1 MGP_C3HHeJ_G0023711.1 mouse_genomes_project 17 68467068 68480991 - Rab12 protein_coding retained_intron MGP_C3HHeJ_T0046506.1 MGP_C3HHeJ_G0023233.1 mouse_genomes_project 17 32093762 32122983 + MGP_C3HHeJ_P0046506 Cyp4f37 protein_coding protein_coding MGP_C3HHeJ_T0045421.1 MGP_C3HHeJ_G0022955.1 mouse_genomes_project 17 19858950 19875625 + MGP_C3HHeJ_P0045421 Zfp51 protein_coding protein_coding MGP_C3HHeJ_T0101818.1 MGP_C3HHeJ_G0039783.1 mouse_genomes_project 17 34507102 34508498 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047997.1 MGP_C3HHeJ_G0023656.1 mouse_genomes_project 17 58172417 58213900 + MGP_C3HHeJ_P0047997 Catsperd protein_coding protein_coding MGP_C3HHeJ_T0047465.1 MGP_C3HHeJ_G0023505.1 mouse_genomes_project 17 44502361 44593251 + MGP_C3HHeJ_P0047465 Cyp39a1 protein_coding protein_coding MGP_C3HHeJ_T0045394.1 MGP_C3HHeJ_G0022937.1 mouse_genomes_project 17 18835350 18836247 + MGP_C3HHeJ_P0045394 Vmn1r225 protein_coding protein_coding MGP_C3HHeJ_T0046094.1 MGP_C3HHeJ_G0023139.1 mouse_genomes_project 17 26010750 26080956 + MGP_C3HHeJ_P0046094 Itpr3 protein_coding protein_coding MGP_C3HHeJ_T0047935.1 MGP_C3HHeJ_G0023639.1 mouse_genomes_project 17 57596968 57614213 - MGP_C3HHeJ_P0047935 Sema6b protein_coding protein_coding MGP_C3HHeJ_T0047936.1 MGP_C3HHeJ_G0023639.1 mouse_genomes_project 17 57596968 57607722 - MGP_C3HHeJ_P0047936 Sema6b protein_coding protein_coding MGP_C3HHeJ_T0045403.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19290306 19310924 + MGP_C3HHeJ_P0045403 Ppp2r1a protein_coding protein_coding MGP_C3HHeJ_T0045404.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19290482 19303777 + MGP_C3HHeJ_P0045404 Ppp2r1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045405.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19301566 19303830 + Ppp2r1a protein_coding retained_intron MGP_C3HHeJ_T0045406.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19301767 19304502 + MGP_C3HHeJ_P0045406 Ppp2r1a protein_coding protein_coding MGP_C3HHeJ_T0045407.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19303733 19305591 + Ppp2r1a protein_coding retained_intron MGP_C3HHeJ_T0045408.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19303981 19306936 + Ppp2r1a protein_coding retained_intron MGP_C3HHeJ_T0045409.1 MGP_C3HHeJ_G0022946.1 mouse_genomes_project 17 19305482 19306259 + Ppp2r1a protein_coding retained_intron MGP_C3HHeJ_T0046600.1 MGP_C3HHeJ_G0023262.1 mouse_genomes_project 17 33272927 33280764 - MGP_C3HHeJ_P0046600 Angptl4 protein_coding protein_coding MGP_C3HHeJ_T0046601.1 MGP_C3HHeJ_G0023262.1 mouse_genomes_project 17 33274089 33280732 - MGP_C3HHeJ_P0046601 Angptl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046602.1 MGP_C3HHeJ_G0023262.1 mouse_genomes_project 17 33276152 33277655 - Angptl4 protein_coding retained_intron MGP_C3HHeJ_T0046603.1 MGP_C3HHeJ_G0023262.1 mouse_genomes_project 17 33276193 33278333 - Angptl4 protein_coding processed_transcript MGP_C3HHeJ_T0010101.1 MGP_C3HHeJ_G0008234.1 mouse_genomes_project 17 25887076 25887139 - Mir3083 miRNA miRNA MGP_C3HHeJ_T0045538.1 MGP_C3HHeJ_G0023002.1 mouse_genomes_project 17 22588989 22594018 + MGP_C3HHeJ_P0045538 Prss21 protein_coding protein_coding MGP_C3HHeJ_T0011347.1 MGP_C3HHeJ_G0009480.1 mouse_genomes_project 17 88307456 88307649 + Gm27427 misc_RNA misc_RNA MGP_C3HHeJ_T0101813.1 MGP_C3HHeJ_G0039778.1 mouse_genomes_project 17 34079057 34079410 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046043.1 MGP_C3HHeJ_G0023126.1 mouse_genomes_project 17 25455731 25457879 + MGP_C3HHeJ_P0046043 Gm8225 protein_coding protein_coding MGP_C3HHeJ_T0047414.1 MGP_C3HHeJ_G0023474.1 mouse_genomes_project 17 39564759 39568107 - MGP_C3HHeJ_P0047414 Esp23 protein_coding protein_coding MGP_C3HHeJ_T0045395.1 MGP_C3HHeJ_G0022938.1 mouse_genomes_project 17 18905301 18906422 + MGP_C3HHeJ_P0045395 Gm5145 protein_coding protein_coding MGP_C3HHeJ_T0048259.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76810773 76992730 + MGP_C3HHeJ_P0048259 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048260.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76810946 76991762 + MGP_C3HHeJ_P0048260 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048261.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76810946 76991762 + MGP_C3HHeJ_P0048261 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048262.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76810946 76991762 + MGP_C3HHeJ_P0048262 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048263.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76811000 76850193 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048264.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76811030 76991762 + MGP_C3HHeJ_P0048264 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048265.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76829135 76832045 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048266.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76840113 76844170 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048267.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76840126 76845889 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048268.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76843797 76846036 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048269.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76844126 76849135 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048270.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76884463 76907380 + MGP_C3HHeJ_P0048270 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048271.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76889458 76892683 + MGP_C3HHeJ_P0048271 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048272.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76898770 76907379 + MGP_C3HHeJ_P0048272 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048273.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76899139 76928165 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048274.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76899169 76906188 + MGP_C3HHeJ_P0048274 Birc6 protein_coding protein_coding MGP_C3HHeJ_T0048275.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76899918 76903221 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048276.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76905819 76907379 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048277.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76940130 76947177 + MGP_C3HHeJ_P0048277 Birc6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048278.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76940140 76941964 + Birc6 protein_coding processed_transcript MGP_C3HHeJ_T0048279.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76941887 76992721 + MGP_C3HHeJ_P0048279 Birc6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048280.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76947058 76956408 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048281.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76957801 76969053 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0048282.1 MGP_C3HHeJ_G0023754.1 mouse_genomes_project 17 76986734 76992443 + Birc6 protein_coding retained_intron MGP_C3HHeJ_T0047117.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35620694 35633279 - MGP_C3HHeJ_P0047117 Vars2 protein_coding protein_coding MGP_C3HHeJ_T0047118.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35620715 35630843 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047119.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35621447 35628047 - MGP_C3HHeJ_P0047119 Vars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047120.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35621614 35627589 - MGP_C3HHeJ_P0047120 Vars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047121.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35621684 35623473 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047122.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35621800 35622575 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047123.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35624612 35625107 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047124.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35624744 35627026 - MGP_C3HHeJ_P0047124 Vars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047125.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35625085 35626705 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047126.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35629007 35632424 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047127.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35630697 35633227 - Vars2 protein_coding retained_intron MGP_C3HHeJ_T0047128.1 MGP_C3HHeJ_G0023375.1 mouse_genomes_project 17 35630781 35633236 - MGP_C3HHeJ_P0047128 Vars2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048216.1 MGP_C3HHeJ_G0023731.1 mouse_genomes_project 17 73594813 73596405 - Gm4707 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0048217.1 MGP_C3HHeJ_G0023731.1 mouse_genomes_project 17 73595511 73595787 - MGP_C3HHeJ_P0048217 Gm4707 protein_coding protein_coding MGP_C3HHeJ_T0048218.1 MGP_C3HHeJ_G0023731.1 mouse_genomes_project 17 73596316 73596882 - MGP_C3HHeJ_P0048218 Gm4707 protein_coding protein_coding MGP_C3HHeJ_T0046969.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868609 34886135 - MGP_C3HHeJ_P0046969 Msh5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046970.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868615 34869915 - Msh5 protein_coding processed_transcript MGP_C3HHeJ_T0046971.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868615 34886383 - MGP_C3HHeJ_P0046971 Msh5 protein_coding protein_coding MGP_C3HHeJ_T0046972.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868615 34887241 - MGP_C3HHeJ_P0046972 Msh5 protein_coding protein_coding MGP_C3HHeJ_T0046973.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868619 34873319 - MGP_C3HHeJ_P0046973 Msh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046974.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868690 34886303 - MGP_C3HHeJ_P0046974 Msh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046975.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34868690 34886303 - MGP_C3HHeJ_P0046975 Msh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046976.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34876764 34887260 - MGP_C3HHeJ_P0046976 Msh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046977.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34878829 34883363 - Msh5 protein_coding retained_intron MGP_C3HHeJ_T0046978.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34878829 34886286 - Msh5 protein_coding retained_intron MGP_C3HHeJ_T0046979.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34883561 34885877 - Msh5 protein_coding retained_intron MGP_C3HHeJ_T0046980.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34883570 34884607 - Msh5 protein_coding retained_intron MGP_C3HHeJ_T0046981.1 MGP_C3HHeJ_G0023335.1 mouse_genomes_project 17 34883695 34886281 - MGP_C3HHeJ_P0046981 Msh5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045457.1 MGP_C3HHeJ_G0022974.1 mouse_genomes_project 17 21311823 21311994 + MGP_C3HHeJ_P0045457 Gm9805 protein_coding protein_coding MGP_C3HHeJ_T0047447.1 MGP_C3HHeJ_G0023499.1 mouse_genomes_project 17 44212113 44282503 + MGP_C3HHeJ_P0047447 Adgrf5 protein_coding protein_coding MGP_C3HHeJ_T0047448.1 MGP_C3HHeJ_G0023499.1 mouse_genomes_project 17 44212278 44278277 + MGP_C3HHeJ_P0047448 Adgrf5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101825.1 MGP_C3HHeJ_G0039790.1 mouse_genomes_project 17 36096243 36269314 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047181.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35856479 35870866 + MGP_C3HHeJ_P0047181 Dhx16 protein_coding protein_coding MGP_C3HHeJ_T0047182.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35856485 35870821 + MGP_C3HHeJ_P0047182 Dhx16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047183.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35864383 35866250 + Dhx16 protein_coding retained_intron MGP_C3HHeJ_T0047184.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35864591 35865309 + Dhx16 protein_coding retained_intron MGP_C3HHeJ_T0047185.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35864597 35865397 + Dhx16 protein_coding retained_intron MGP_C3HHeJ_T0047186.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35864681 35866148 + Dhx16 protein_coding retained_intron MGP_C3HHeJ_T0047187.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35865936 35870862 + MGP_C3HHeJ_P0047187 Dhx16 protein_coding protein_coding MGP_C3HHeJ_T0047188.1 MGP_C3HHeJ_G0023384.1 mouse_genomes_project 17 35867483 35870749 + Dhx16 protein_coding retained_intron MGP_C3HHeJ_T0047599.1 MGP_C3HHeJ_G0023534.1 mouse_genomes_project 17 47224028 47228486 + MGP_C3HHeJ_P0047599 Yipf3 protein_coding protein_coding MGP_C3HHeJ_T0047600.1 MGP_C3HHeJ_G0023534.1 mouse_genomes_project 17 47224073 47227437 + MGP_C3HHeJ_P0047600 Yipf3 protein_coding protein_coding MGP_C3HHeJ_T0047601.1 MGP_C3HHeJ_G0023534.1 mouse_genomes_project 17 47224093 47227950 + Yipf3 protein_coding retained_intron MGP_C3HHeJ_T0047602.1 MGP_C3HHeJ_G0023534.1 mouse_genomes_project 17 47224977 47227853 + MGP_C3HHeJ_P0047602 Yipf3 protein_coding protein_coding MGP_C3HHeJ_T0047603.1 MGP_C3HHeJ_G0023534.1 mouse_genomes_project 17 47226037 47226942 + Yipf3 protein_coding processed_transcript MGP_C3HHeJ_T0047604.1 MGP_C3HHeJ_G0023534.1 mouse_genomes_project 17 47227289 47227966 + Yipf3 protein_coding processed_transcript MGP_C3HHeJ_T0013163.1 MGP_C3HHeJ_G0011267.1 mouse_genomes_project 17 97810626 97810801 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045410.1 MGP_C3HHeJ_G0022947.1 mouse_genomes_project 17 19329024 19329984 - MGP_C3HHeJ_P0045410 Vmn1r233 protein_coding protein_coding MGP_C3HHeJ_T0010106.1 MGP_C3HHeJ_G0008239.1 mouse_genomes_project 17 26344337 26344396 + Mir7218 miRNA miRNA MGP_C3HHeJ_T0006836.1 MGP_C3HHeJ_G0005626.1 mouse_genomes_project 17 27602215 27604306 + E230001N04Rik lincRNA lincRNA MGP_C3HHeJ_T0006837.1 MGP_C3HHeJ_G0005626.1 mouse_genomes_project 17 27602251 27604306 + E230001N04Rik lincRNA lincRNA MGP_C3HHeJ_T0046535.1 MGP_C3HHeJ_G0023244.1 mouse_genomes_project 17 32524568 32542445 - MGP_C3HHeJ_P0046535 Zfp763 protein_coding protein_coding MGP_C3HHeJ_T0046536.1 MGP_C3HHeJ_G0023244.1 mouse_genomes_project 17 32527467 32542211 - Zfp763 protein_coding processed_transcript MGP_C3HHeJ_T0048235.1 MGP_C3HHeJ_G0023738.1 mouse_genomes_project 17 74026871 74791701 - MGP_C3HHeJ_P0048235 Alk protein_coding protein_coding MGP_C3HHeJ_T0101787.1 MGP_C3HHeJ_G0039752.1 mouse_genomes_project 17 17702187 17703385 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013158.1 MGP_C3HHeJ_G0011262.1 mouse_genomes_project 17 89869698 89870776 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010103.1 MGP_C3HHeJ_G0008236.1 mouse_genomes_project 17 26299961 26300022 - Mir7214 miRNA miRNA MGP_C3HHeJ_T0013113.1 MGP_C3HHeJ_G0011217.1 mouse_genomes_project 17 38205252 38205624 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045508.1 MGP_C3HHeJ_G0022992.1 mouse_genomes_project 17 22426745 22437823 + MGP_C3HHeJ_P0045508 Pkmyt1 protein_coding protein_coding MGP_C3HHeJ_T0045898.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24690941 24693915 + MGP_C3HHeJ_P0045898 Jmjd8 protein_coding protein_coding MGP_C3HHeJ_T0045899.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691117 24693917 + MGP_C3HHeJ_P0045899 Jmjd8 protein_coding protein_coding MGP_C3HHeJ_T0045900.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691138 24692225 + Jmjd8 protein_coding retained_intron MGP_C3HHeJ_T0045901.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691145 24692700 + MGP_C3HHeJ_P0045901 Jmjd8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045902.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691194 24692708 + MGP_C3HHeJ_P0045902 Jmjd8 protein_coding protein_coding MGP_C3HHeJ_T0045903.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691195 24692436 + Jmjd8 protein_coding retained_intron MGP_C3HHeJ_T0045904.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691371 24692601 + Jmjd8 protein_coding retained_intron MGP_C3HHeJ_T0045905.1 MGP_C3HHeJ_G0023096.1 mouse_genomes_project 17 24691913 24692796 + Jmjd8 protein_coding retained_intron MGP_C3HHeJ_T0047665.1 MGP_C3HHeJ_G0023554.1 mouse_genomes_project 17 47737643 47751704 + Pex6 protein_coding retained_intron MGP_C3HHeJ_T0047666.1 MGP_C3HHeJ_G0023554.1 mouse_genomes_project 17 47737643 47751704 + MGP_C3HHeJ_P0047666 Pex6 protein_coding protein_coding MGP_C3HHeJ_T0047667.1 MGP_C3HHeJ_G0023554.1 mouse_genomes_project 17 47737656 47743682 + Pex6 protein_coding processed_transcript MGP_C3HHeJ_T0047668.1 MGP_C3HHeJ_G0023554.1 mouse_genomes_project 17 47746436 47747980 + Pex6 protein_coding retained_intron MGP_C3HHeJ_T0046445.1 MGP_C3HHeJ_G0023220.1 mouse_genomes_project 17 31354171 31444809 - MGP_C3HHeJ_P0046445 Hsf2bp protein_coding protein_coding MGP_C3HHeJ_T0046446.1 MGP_C3HHeJ_G0023220.1 mouse_genomes_project 17 31419189 31433520 - Hsf2bp protein_coding processed_transcript MGP_C3HHeJ_T0013084.1 MGP_C3HHeJ_G0011188.1 mouse_genomes_project 17 26522845 26523188 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003714.1 MGP_C3HHeJ_G0003338.1 mouse_genomes_project 17 72937166 72938547 + Gm20703 antisense antisense MGP_C3HHeJ_T0047311.1 MGP_C3HHeJ_G0023416.1 mouse_genomes_project 17 37083149 37087036 - MGP_C3HHeJ_P0047311 Znrd1 protein_coding protein_coding MGP_C3HHeJ_T0047312.1 MGP_C3HHeJ_G0023416.1 mouse_genomes_project 17 37083151 37087087 - MGP_C3HHeJ_P0047312 Znrd1 protein_coding protein_coding MGP_C3HHeJ_T0047313.1 MGP_C3HHeJ_G0023416.1 mouse_genomes_project 17 37083204 37086872 - MGP_C3HHeJ_P0047313 Znrd1 protein_coding protein_coding MGP_C3HHeJ_T0047314.1 MGP_C3HHeJ_G0023416.1 mouse_genomes_project 17 37083236 37087113 - Znrd1 protein_coding processed_transcript MGP_C3HHeJ_T0047445.1 MGP_C3HHeJ_G0023497.1 mouse_genomes_project 17 43814790 43890722 + MGP_C3HHeJ_P0047445 Tnfrsf21 protein_coding protein_coding MGP_C3HHeJ_T0046804.1 MGP_C3HHeJ_G0023304.1 mouse_genomes_project 17 34299695 34306647 + MGP_C3HHeJ_P0046804 Pbx2 protein_coding protein_coding MGP_C3HHeJ_T0046805.1 MGP_C3HHeJ_G0023304.1 mouse_genomes_project 17 34301985 34306650 + MGP_C3HHeJ_P0046805 Pbx2 protein_coding protein_coding MGP_C3HHeJ_T0046806.1 MGP_C3HHeJ_G0023304.1 mouse_genomes_project 17 34302645 34303631 + MGP_C3HHeJ_P0046806 Pbx2 protein_coding protein_coding MGP_C3HHeJ_T0046807.1 MGP_C3HHeJ_G0023304.1 mouse_genomes_project 17 34304705 34305473 + Pbx2 protein_coding retained_intron MGP_C3HHeJ_T0047189.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35870868 35874575 - MGP_C3HHeJ_P0047189 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047190.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35870872 35876287 - MGP_C3HHeJ_P0047190 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047191.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35870872 35875977 - MGP_C3HHeJ_P0047191 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047192.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35870882 35875968 - MGP_C3HHeJ_P0047192 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047193.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35871026 35874780 - MGP_C3HHeJ_P0047193 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047194.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35873903 35875930 - MGP_C3HHeJ_P0047194 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047195.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35874630 35875465 - 2310061I04Rik protein_coding processed_transcript MGP_C3HHeJ_T0047196.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35874779 35875960 - MGP_C3HHeJ_P0047196 2310061I04Rik protein_coding protein_coding MGP_C3HHeJ_T0047197.1 MGP_C3HHeJ_G0023385.1 mouse_genomes_project 17 35875132 35876169 - 2310061I04Rik protein_coding processed_transcript MGP_C3HHeJ_T0045666.1 MGP_C3HHeJ_G0023037.1 mouse_genomes_project 17 23470004 23482661 + MGP_C3HHeJ_P0045666 Zfp598 protein_coding protein_coding MGP_C3HHeJ_T0048516.1 MGP_C3HHeJ_G0023842.1 mouse_genomes_project 17 94060636 94061535 + MGP_C3HHeJ_P0048516 Gm10308 protein_coding protein_coding MGP_C3HHeJ_T0045372.1 MGP_C3HHeJ_G0022916.1 mouse_genomes_project 17 16026174 16051294 + MGP_C3HHeJ_P0045372 Vmn2r124 protein_coding protein_coding MGP_C3HHeJ_T0101827.1 MGP_C3HHeJ_G0039792.1 mouse_genomes_project 17 36242315 36242523 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013150.1 MGP_C3HHeJ_G0011254.1 mouse_genomes_project 17 81116148 81120591 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048362.1 MGP_C3HHeJ_G0023793.1 mouse_genomes_project 17 83895487 84166001 - MGP_C3HHeJ_P0048362 Slc8a1 protein_coding protein_coding MGP_C3HHeJ_T0048363.1 MGP_C3HHeJ_G0023793.1 mouse_genomes_project 17 83895487 84166001 - MGP_C3HHeJ_P0048363 Slc8a1 protein_coding protein_coding MGP_C3HHeJ_T0048364.1 MGP_C3HHeJ_G0023793.1 mouse_genomes_project 17 83895487 84166001 - MGP_C3HHeJ_P0048364 Slc8a1 protein_coding protein_coding MGP_C3HHeJ_T0010090.1 MGP_C3HHeJ_G0008223.1 mouse_genomes_project 17 22753687 22753768 + Gm27700 miRNA miRNA MGP_C3HHeJ_T0006910.1 MGP_C3HHeJ_G0005678.1 mouse_genomes_project 17 91036780 91051115 - Gm26612 lincRNA lincRNA MGP_C3HHeJ_T0017359.1 MGP_C3HHeJ_G0015115.1 mouse_genomes_project 17 48196760 48394976 + Trerf1 processed_transcript retained_intron MGP_C3HHeJ_T0017360.1 MGP_C3HHeJ_G0015115.1 mouse_genomes_project 17 48196791 48426911 + Trerf1 processed_transcript processed_transcript MGP_C3HHeJ_T0017361.1 MGP_C3HHeJ_G0015115.1 mouse_genomes_project 17 48196791 48429341 + Trerf1 processed_transcript processed_transcript MGP_C3HHeJ_T0017362.1 MGP_C3HHeJ_G0015115.1 mouse_genomes_project 17 48197065 48384255 + Trerf1 processed_transcript retained_intron MGP_C3HHeJ_T0017363.1 MGP_C3HHeJ_G0015115.1 mouse_genomes_project 17 48272779 48384255 + Trerf1 processed_transcript retained_intron MGP_C3HHeJ_T0017364.1 MGP_C3HHeJ_G0015115.1 mouse_genomes_project 17 48359587 48426916 + Trerf1 processed_transcript processed_transcript MGP_C3HHeJ_T0013137.1 MGP_C3HHeJ_G0011241.1 mouse_genomes_project 17 55825969 55826110 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048348.1 MGP_C3HHeJ_G0023783.1 mouse_genomes_project 17 82733429 82785667 - MGP_C3HHeJ_P0048348 Dhx57 protein_coding protein_coding MGP_C3HHeJ_T0048349.1 MGP_C3HHeJ_G0023783.1 mouse_genomes_project 17 82733429 82785667 - MGP_C3HHeJ_P0048349 Dhx57 protein_coding protein_coding MGP_C3HHeJ_T0047353.1 MGP_C3HHeJ_G0023423.1 mouse_genomes_project 17 37229747 37230793 - MGP_C3HHeJ_P0047353 Olfr90 protein_coding protein_coding MGP_C3HHeJ_T0003719.1 MGP_C3HHeJ_G0003343.1 mouse_genomes_project 17 90136085 90138374 - Gm15978 antisense antisense MGP_C3HHeJ_T0003684.1 MGP_C3HHeJ_G0003315.1 mouse_genomes_project 17 34972237 34977756 - Gm20522 antisense antisense MGP_C3HHeJ_T0013120.1 MGP_C3HHeJ_G0011224.1 mouse_genomes_project 17 46381451 46382493 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011323.1 MGP_C3HHeJ_G0009456.1 mouse_genomes_project 17 10344104 10344356 + Gm23833 misc_RNA misc_RNA MGP_C3HHeJ_T0013076.1 MGP_C3HHeJ_G0011180.1 mouse_genomes_project 17 22199845 22200168 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047072.1 MGP_C3HHeJ_G0023360.1 mouse_genomes_project 17 35097411 35104980 + MGP_C3HHeJ_P0047072 Ddx39b protein_coding protein_coding MGP_C3HHeJ_T0047073.1 MGP_C3HHeJ_G0023360.1 mouse_genomes_project 17 35097418 35109122 + MGP_C3HHeJ_P0047073 Ddx39b protein_coding protein_coding MGP_C3HHeJ_T0047074.1 MGP_C3HHeJ_G0023360.1 mouse_genomes_project 17 35097477 35105541 + Ddx39b protein_coding retained_intron MGP_C3HHeJ_T0047075.1 MGP_C3HHeJ_G0023360.1 mouse_genomes_project 17 35097542 35109095 + MGP_C3HHeJ_P0047075 Ddx39b protein_coding protein_coding MGP_C3HHeJ_T0047076.1 MGP_C3HHeJ_G0023360.1 mouse_genomes_project 17 35097668 35098897 + Ddx39b protein_coding processed_transcript MGP_C3HHeJ_T0047077.1 MGP_C3HHeJ_G0023360.1 mouse_genomes_project 17 35098340 35109091 + MGP_C3HHeJ_P0047077 Ddx39b protein_coding protein_coding MGP_C3HHeJ_T0099079.1 MGP_C3HHeJ_G0037273.1 mouse_genomes_project 17 32303071 32303235 - Gm23294 snRNA snRNA MGP_C3HHeJ_T0047002.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34935624 34938220 + Abhd16a protein_coding retained_intron MGP_C3HHeJ_T0047003.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34935652 34951229 + MGP_C3HHeJ_P0047003 Abhd16a protein_coding protein_coding MGP_C3HHeJ_T0047004.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34935675 34951198 + MGP_C3HHeJ_P0047004 Abhd16a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047005.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34936233 34938360 + Abhd16a protein_coding retained_intron MGP_C3HHeJ_T0047006.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34944527 34949122 + Abhd16a protein_coding processed_transcript MGP_C3HHeJ_T0047007.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34948112 34948877 + Abhd16a protein_coding retained_intron MGP_C3HHeJ_T0047008.1 MGP_C3HHeJ_G0023343.1 mouse_genomes_project 17 34949035 34950210 + Abhd16a protein_coding retained_intron MGP_C3HHeJ_T0047358.1 MGP_C3HHeJ_G0023428.1 mouse_genomes_project 17 37376555 37377860 - MGP_C3HHeJ_P0047358 Olfr94 protein_coding protein_coding MGP_C3HHeJ_T0048207.1 MGP_C3HHeJ_G0023729.1 mouse_genomes_project 17 73384245 73445115 - MGP_C3HHeJ_P0048207 Emilin2 protein_coding protein_coding MGP_C3HHeJ_T0013132.1 MGP_C3HHeJ_G0011236.1 mouse_genomes_project 17 55263144 55263490 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047078.1 MGP_C3HHeJ_G0023361.1 mouse_genomes_project 17 35118093 35300641 + MGP_C3HHeJ_P0047078 H2-K1 protein_coding protein_coding MGP_C3HHeJ_T0048012.1 MGP_C3HHeJ_G0023666.1 mouse_genomes_project 17 58451711 58494295 - MGP_C3HHeJ_P0048012 Mllt1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048013.1 MGP_C3HHeJ_G0023666.1 mouse_genomes_project 17 58451720 58494409 - MGP_C3HHeJ_P0048013 Mllt1 protein_coding protein_coding MGP_C3HHeJ_T0099106.1 MGP_C3HHeJ_G0037300.1 mouse_genomes_project 17 91245682 91245777 - Gm22542 snRNA snRNA MGP_C3HHeJ_T0047411.1 MGP_C3HHeJ_G0023471.1 mouse_genomes_project 17 39071360 39076573 + MGP_C3HHeJ_P0047411 Esp31 protein_coding protein_coding MGP_C3HHeJ_T0047572.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47130750 47139089 + MGP_C3HHeJ_P0047572 Gtpbp2 protein_coding protein_coding MGP_C3HHeJ_T0047573.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47130750 47139087 + MGP_C3HHeJ_P0047573 Gtpbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047574.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47130767 47133224 + Gtpbp2 protein_coding processed_transcript MGP_C3HHeJ_T0047575.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47130784 47139055 + MGP_C3HHeJ_P0047575 Gtpbp2 protein_coding protein_coding MGP_C3HHeJ_T0047576.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47130829 47134026 + MGP_C3HHeJ_P0047576 Gtpbp2 protein_coding protein_coding MGP_C3HHeJ_T0047577.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47130879 47131877 + Gtpbp2 protein_coding processed_transcript MGP_C3HHeJ_T0047578.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47131013 47134469 + Gtpbp2 protein_coding processed_transcript MGP_C3HHeJ_T0047579.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47132751 47134540 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0047580.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47132944 47135514 + Gtpbp2 protein_coding processed_transcript MGP_C3HHeJ_T0047581.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47133036 47134907 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0047582.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47135414 47137601 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0047583.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47135496 47137051 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0047584.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47136149 47137953 + MGP_C3HHeJ_P0047584 Gtpbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047585.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47136585 47137740 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0047586.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47136706 47137930 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0047587.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47136949 47138113 + MGP_C3HHeJ_P0047587 Gtpbp2 protein_coding protein_coding MGP_C3HHeJ_T0047588.1 MGP_C3HHeJ_G0023530.1 mouse_genomes_project 17 47137354 47138129 + Gtpbp2 protein_coding retained_intron MGP_C3HHeJ_T0046421.1 MGP_C3HHeJ_G0023214.1 mouse_genomes_project 17 30909416 30920622 + MGP_C3HHeJ_P0046421 Ndufv3 protein_coding protein_coding MGP_C3HHeJ_T0046422.1 MGP_C3HHeJ_G0023214.1 mouse_genomes_project 17 30909451 30917135 + Ndufv3 protein_coding processed_transcript MGP_C3HHeJ_T0046423.1 MGP_C3HHeJ_G0023214.1 mouse_genomes_project 17 30909459 30920625 + MGP_C3HHeJ_P0046423 Ndufv3 protein_coding protein_coding MGP_C3HHeJ_T0046424.1 MGP_C3HHeJ_G0023214.1 mouse_genomes_project 17 30909486 30916538 + MGP_C3HHeJ_P0046424 Ndufv3 protein_coding protein_coding MGP_C3HHeJ_T0046425.1 MGP_C3HHeJ_G0023214.1 mouse_genomes_project 17 30918387 30920625 + Ndufv3 protein_coding processed_transcript MGP_C3HHeJ_T0047633.1 MGP_C3HHeJ_G0023542.1 mouse_genomes_project 17 47445529 47491009 - MGP_C3HHeJ_P0047633 Ttbk1 protein_coding protein_coding MGP_C3HHeJ_T0047634.1 MGP_C3HHeJ_G0023542.1 mouse_genomes_project 17 47464128 47487596 - MGP_C3HHeJ_P0047634 Ttbk1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046355.1 MGP_C3HHeJ_G0023196.1 mouse_genomes_project 17 28871098 28898676 - MGP_C3HHeJ_P0046355 Ccdc167 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046356.1 MGP_C3HHeJ_G0023196.1 mouse_genomes_project 17 28879183 28898652 - MGP_C3HHeJ_P0046356 Ccdc167 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046357.1 MGP_C3HHeJ_G0023196.1 mouse_genomes_project 17 28879929 28898676 - MGP_C3HHeJ_P0046357 Ccdc167 protein_coding protein_coding MGP_C3HHeJ_T0046358.1 MGP_C3HHeJ_G0023196.1 mouse_genomes_project 17 28881607 28898630 - MGP_C3HHeJ_P0046358 Ccdc167 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046359.1 MGP_C3HHeJ_G0023196.1 mouse_genomes_project 17 28884940 28898679 - MGP_C3HHeJ_P0046359 Ccdc167 protein_coding protein_coding MGP_C3HHeJ_T0046360.1 MGP_C3HHeJ_G0023196.1 mouse_genomes_project 17 28894581 28898631 - Ccdc167 protein_coding processed_transcript MGP_C3HHeJ_T0006874.1 MGP_C3HHeJ_G0005656.1 mouse_genomes_project 17 50321874 50323126 - 1700008K24Rik lincRNA lincRNA MGP_C3HHeJ_T0006875.1 MGP_C3HHeJ_G0005656.1 mouse_genomes_project 17 50321874 50323139 - 1700008K24Rik lincRNA lincRNA MGP_C3HHeJ_T0006876.1 MGP_C3HHeJ_G0005656.1 mouse_genomes_project 17 50321876 50323104 - 1700008K24Rik lincRNA lincRNA MGP_C3HHeJ_T0006877.1 MGP_C3HHeJ_G0005656.1 mouse_genomes_project 17 50321876 50323047 - 1700008K24Rik lincRNA lincRNA MGP_C3HHeJ_T0006878.1 MGP_C3HHeJ_G0005656.1 mouse_genomes_project 17 50321984 50323146 - 1700008K24Rik lincRNA lincRNA MGP_C3HHeJ_T0048330.1 MGP_C3HHeJ_G0023775.1 mouse_genomes_project 17 82092471 82094476 + MGP_C3HHeJ_P0048330 4921513D11Rik protein_coding protein_coding MGP_C3HHeJ_T0013122.1 MGP_C3HHeJ_G0011226.1 mouse_genomes_project 17 49058653 49059010 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045705.1 MGP_C3HHeJ_G0023048.1 mouse_genomes_project 17 23617342 23653717 + MGP_C3HHeJ_P0045705 Meiob protein_coding unknown_likely_coding MGP_C3HHeJ_T0013147.1 MGP_C3HHeJ_G0011251.1 mouse_genomes_project 17 77463039 77463618 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101842.1 MGP_C3HHeJ_G0039807.1 mouse_genomes_project 17 36807458 36807887 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013146.1 MGP_C3HHeJ_G0011250.1 mouse_genomes_project 17 75400545 75401973 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048048.1 MGP_C3HHeJ_G0023685.1 mouse_genomes_project 17 58854979 58906832 + MGP_C3HHeJ_P0048048 Vav1 protein_coding protein_coding MGP_C3HHeJ_T0048049.1 MGP_C3HHeJ_G0023685.1 mouse_genomes_project 17 58854979 58906913 + MGP_C3HHeJ_P0048049 Vav1 protein_coding protein_coding MGP_C3HHeJ_T0048050.1 MGP_C3HHeJ_G0023685.1 mouse_genomes_project 17 58855006 58906837 + MGP_C3HHeJ_P0048050 Vav1 protein_coding protein_coding MGP_C3HHeJ_T0048051.1 MGP_C3HHeJ_G0023685.1 mouse_genomes_project 17 58881457 58883707 + Vav1 protein_coding retained_intron MGP_C3HHeJ_T0048052.1 MGP_C3HHeJ_G0023685.1 mouse_genomes_project 17 58890917 58906835 + Vav1 protein_coding processed_transcript MGP_C3HHeJ_T0006859.1 MGP_C3HHeJ_G0005644.1 mouse_genomes_project 17 35707250 35728469 - Gm20442 lincRNA lincRNA MGP_C3HHeJ_T0101820.1 MGP_C3HHeJ_G0039785.1 mouse_genomes_project 17 35034273 35039749 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045107.1 MGP_C3HHeJ_G0022836.1 mouse_genomes_project 17 2259044 2259798 - protein_coding processed_transcript MGP_C3HHeJ_T0047772.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48925638 48944497 - MGP_C3HHeJ_P0047772 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047773.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48925638 48944547 - MGP_C3HHeJ_P0047773 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047774.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48925638 48945947 - MGP_C3HHeJ_P0047774 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047775.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48926124 48944514 - Mdfi protein_coding processed_transcript MGP_C3HHeJ_T0047776.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48926242 48944425 - MGP_C3HHeJ_P0047776 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047777.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48931410 48944517 - Mdfi protein_coding retained_intron MGP_C3HHeJ_T0047778.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48932449 48944528 - MGP_C3HHeJ_P0047778 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047779.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48932538 48944501 - MGP_C3HHeJ_P0047779 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047780.1 MGP_C3HHeJ_G0023583.1 mouse_genomes_project 17 48935925 48944486 - MGP_C3HHeJ_P0047780 Mdfi protein_coding protein_coding MGP_C3HHeJ_T0047730.1 MGP_C3HHeJ_G0023574.1 mouse_genomes_project 17 48704525 48719085 + MGP_C3HHeJ_P0047730 Med20 protein_coding protein_coding MGP_C3HHeJ_T0047731.1 MGP_C3HHeJ_G0023574.1 mouse_genomes_project 17 48704528 48713418 + Med20 protein_coding retained_intron MGP_C3HHeJ_T0047734.1 MGP_C3HHeJ_G0023574.1 mouse_genomes_project 17 48704551 48718915 + Med20 protein_coding retained_intron MGP_C3HHeJ_T0047736.1 MGP_C3HHeJ_G0023574.1 mouse_genomes_project 17 48704564 48706239 + Med20 protein_coding retained_intron MGP_C3HHeJ_T0046512.1 MGP_C3HHeJ_G0023236.1 mouse_genomes_project 17 32270426 32290203 - MGP_C3HHeJ_P0046512 Zfp871 protein_coding protein_coding MGP_C3HHeJ_T0046513.1 MGP_C3HHeJ_G0023236.1 mouse_genomes_project 17 32276317 32290313 - Zfp871 protein_coding processed_transcript MGP_C3HHeJ_T0045613.1 MGP_C3HHeJ_G0023024.1 mouse_genomes_project 17 23222622 23226104 - Dnase1l2 protein_coding retained_intron MGP_C3HHeJ_T0045614.1 MGP_C3HHeJ_G0023024.1 mouse_genomes_project 17 23222628 23227008 - MGP_C3HHeJ_P0045614 Dnase1l2 protein_coding protein_coding MGP_C3HHeJ_T0045615.1 MGP_C3HHeJ_G0023024.1 mouse_genomes_project 17 23224505 23226987 - MGP_C3HHeJ_P0045615 Dnase1l2 protein_coding protein_coding MGP_C3HHeJ_T0045616.1 MGP_C3HHeJ_G0023024.1 mouse_genomes_project 17 23224696 23226056 - MGP_C3HHeJ_P0045616 Dnase1l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045617.1 MGP_C3HHeJ_G0023024.1 mouse_genomes_project 17 23225419 23226604 - MGP_C3HHeJ_P0045617 Dnase1l2 protein_coding protein_coding MGP_C3HHeJ_T0045618.1 MGP_C3HHeJ_G0023024.1 mouse_genomes_project 17 23225617 23227007 - MGP_C3HHeJ_P0045618 Dnase1l2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047027.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986145 34998285 + MGP_C3HHeJ_P0047027 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047028.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986145 34998302 + MGP_C3HHeJ_P0047028 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047029.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986172 34998286 + MGP_C3HHeJ_P0047029 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047030.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986195 34991277 + MGP_C3HHeJ_P0047030 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047031.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986453 34993575 + MGP_C3HHeJ_P0047031 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047032.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986477 34991340 + MGP_C3HHeJ_P0047032 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047033.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986685 34989673 + MGP_C3HHeJ_P0047033 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047034.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986697 34997329 + MGP_C3HHeJ_P0047034 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047035.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34986711 34998300 + MGP_C3HHeJ_P0047035 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047036.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34987090 34989933 + Bag6 protein_coding retained_intron MGP_C3HHeJ_T0047037.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34989540 34990818 + Bag6 protein_coding retained_intron MGP_C3HHeJ_T0047038.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34991198 34992373 + Bag6 protein_coding retained_intron MGP_C3HHeJ_T0047039.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34992141 34992966 + Bag6 protein_coding retained_intron MGP_C3HHeJ_T0047040.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34992956 34993582 + Bag6 protein_coding retained_intron MGP_C3HHeJ_T0047041.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34996867 34998299 + MGP_C3HHeJ_P0047041 Bag6 protein_coding protein_coding MGP_C3HHeJ_T0047042.1 MGP_C3HHeJ_G0023350.1 mouse_genomes_project 17 34997356 34998276 + Bag6 protein_coding retained_intron MGP_C3HHeJ_T0047381.1 MGP_C3HHeJ_G0023448.1 mouse_genomes_project 17 37879677 37881678 - MGP_C3HHeJ_P0047381 protein_coding protein_coding MGP_C3HHeJ_T0013119.1 MGP_C3HHeJ_G0011223.1 mouse_genomes_project 17 42073679 42074680 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101788.1 MGP_C3HHeJ_G0039753.1 mouse_genomes_project 17 18003779 18004685 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045317.1 MGP_C3HHeJ_G0022900.1 mouse_genomes_project 17 13137479 13175828 + MGP_C3HHeJ_P0045317 Fam120b protein_coding protein_coding MGP_C3HHeJ_T0047286.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963329 36964044 + Trim26 protein_coding retained_intron MGP_C3HHeJ_T0047287.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963336 36983465 + Trim26 protein_coding retained_intron MGP_C3HHeJ_T0047288.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963336 36986816 + MGP_C3HHeJ_P0047288 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047289.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963338 36986834 + MGP_C3HHeJ_P0047289 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047290.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963341 36986816 + MGP_C3HHeJ_P0047290 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047291.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963368 36980084 + MGP_C3HHeJ_P0047291 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047292.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963379 36985061 + MGP_C3HHeJ_P0047292 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047293.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36963379 36986833 + MGP_C3HHeJ_P0047293 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047294.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36979896 36985373 + MGP_C3HHeJ_P0047294 Trim26 protein_coding protein_coding MGP_C3HHeJ_T0047295.1 MGP_C3HHeJ_G0023409.1 mouse_genomes_project 17 36982026 36986834 + Trim26 protein_coding processed_transcript MGP_C3HHeJ_T0003692.1 MGP_C3HHeJ_G0003323.1 mouse_genomes_project 17 44421024 44424196 - 1700071M16Rik antisense antisense MGP_C3HHeJ_T0003693.1 MGP_C3HHeJ_G0003323.1 mouse_genomes_project 17 44421217 44424196 - 1700071M16Rik antisense antisense MGP_C3HHeJ_T0003694.1 MGP_C3HHeJ_G0003323.1 mouse_genomes_project 17 44423846 44425119 - 1700071M16Rik antisense antisense MGP_C3HHeJ_T0003695.1 MGP_C3HHeJ_G0003323.1 mouse_genomes_project 17 44423846 44425129 - 1700071M16Rik antisense antisense MGP_C3HHeJ_T0010123.1 MGP_C3HHeJ_G0008256.1 mouse_genomes_project 17 35841773 35841869 - Gm28033 miRNA miRNA MGP_C3HHeJ_T0045229.1 MGP_C3HHeJ_G0022874.1 mouse_genomes_project 17 9681980 9773344 + MGP_C3HHeJ_P0045229 Agpat4 protein_coding protein_coding MGP_C3HHeJ_T0045230.1 MGP_C3HHeJ_G0022874.1 mouse_genomes_project 17 9682569 9782080 + MGP_C3HHeJ_P0045230 Agpat4 protein_coding protein_coding MGP_C3HHeJ_T0045231.1 MGP_C3HHeJ_G0022874.1 mouse_genomes_project 17 9682614 9706619 + Agpat4 protein_coding processed_transcript MGP_C3HHeJ_T0045232.1 MGP_C3HHeJ_G0022874.1 mouse_genomes_project 17 9718621 9772995 + MGP_C3HHeJ_P0045232 Agpat4 protein_coding protein_coding MGP_C3HHeJ_T0045233.1 MGP_C3HHeJ_G0022874.1 mouse_genomes_project 17 9718701 9781528 + MGP_C3HHeJ_P0045233 Agpat4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045234.1 MGP_C3HHeJ_G0022874.1 mouse_genomes_project 17 9777753 9781702 + Agpat4 protein_coding retained_intron MGP_C3HHeJ_T0006902.1 MGP_C3HHeJ_G0005673.1 mouse_genomes_project 17 87608616 87611359 - 1110020A21Rik lincRNA lincRNA MGP_C3HHeJ_T0100340.1 MGP_C3HHeJ_G0038534.1 mouse_genomes_project 17 34785805 34785868 - Gm25744 snoRNA snoRNA MGP_C3HHeJ_T0000964.1 MGP_C3HHeJ_G0000901.1 mouse_genomes_project 17 73502389 73505181 - TEC TEC MGP_C3HHeJ_T0045947.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24745927 24785776 - MGP_C3HHeJ_P0045947 Rab40c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045948.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24745927 24785872 - MGP_C3HHeJ_P0045948 Rab40c protein_coding protein_coding MGP_C3HHeJ_T0045949.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24745927 24785862 - MGP_C3HHeJ_P0045949 Rab40c protein_coding protein_coding MGP_C3HHeJ_T0045950.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24745927 24785934 - MGP_C3HHeJ_P0045950 Rab40c protein_coding protein_coding MGP_C3HHeJ_T0045951.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24745930 24779852 - Rab40c protein_coding processed_transcript MGP_C3HHeJ_T0045952.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24747441 24785726 - MGP_C3HHeJ_P0045952 Rab40c protein_coding protein_coding MGP_C3HHeJ_T0045953.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24747452 24785947 - MGP_C3HHeJ_P0045953 Rab40c protein_coding protein_coding MGP_C3HHeJ_T0045954.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24748576 24785910 - Rab40c protein_coding processed_transcript MGP_C3HHeJ_T0045955.1 MGP_C3HHeJ_G0023105.1 mouse_genomes_project 17 24748895 24785931 - MGP_C3HHeJ_P0045955 Rab40c protein_coding protein_coding MGP_C3HHeJ_T0047663.1 MGP_C3HHeJ_G0023552.1 mouse_genomes_project 17 47704884 47707437 + MGP_C3HHeJ_P0047663 Mea1 protein_coding protein_coding MGP_C3HHeJ_T0048462.1 MGP_C3HHeJ_G0023831.1 mouse_genomes_project 17 90602535 90653267 - MGP_C3HHeJ_P0048462 Kcnk12 protein_coding protein_coding MGP_C3HHeJ_T0046937.1 MGP_C3HHeJ_G0023329.1 mouse_genomes_project 17 34792995 34795848 + MGP_C3HHeJ_P0046937 Gm20481 protein_coding protein_coding MGP_C3HHeJ_T0013131.1 MGP_C3HHeJ_G0011235.1 mouse_genomes_project 17 55130551 55131552 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010110.1 MGP_C3HHeJ_G0008243.1 mouse_genomes_project 17 30322088 30322202 + Gm24026 miRNA miRNA MGP_C3HHeJ_T0101861.1 MGP_C3HHeJ_G0039826.1 mouse_genomes_project 17 57299748 57300396 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046759.1 MGP_C3HHeJ_G0023292.1 mouse_genomes_project 17 33811575 33820918 + MGP_C3HHeJ_P0046759 H2-Ob protein_coding protein_coding MGP_C3HHeJ_T0046760.1 MGP_C3HHeJ_G0023292.1 mouse_genomes_project 17 33811577 33816490 + H2-Ob protein_coding retained_intron MGP_C3HHeJ_T0046761.1 MGP_C3HHeJ_G0023292.1 mouse_genomes_project 17 33811603 33820809 + MGP_C3HHeJ_P0046761 H2-Ob protein_coding protein_coding MGP_C3HHeJ_T0046762.1 MGP_C3HHeJ_G0023292.1 mouse_genomes_project 17 33815009 33819401 + MGP_C3HHeJ_P0046762 H2-Ob protein_coding protein_coding MGP_C3HHeJ_T0047635.1 MGP_C3HHeJ_G0023543.1 mouse_genomes_project 17 47501430 47504260 + MGP_C3HHeJ_P0047635 Dnph1 protein_coding protein_coding MGP_C3HHeJ_T0010130.1 MGP_C3HHeJ_G0008263.1 mouse_genomes_project 17 57647013 57647126 - Gm44397 miRNA miRNA MGP_C3HHeJ_T0013116.1 MGP_C3HHeJ_G0011220.1 mouse_genomes_project 17 38343001 38343863 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048406.1 MGP_C3HHeJ_G0023810.1 mouse_genomes_project 17 87687153 87725540 + MGP_C3HHeJ_P0048406 Slc3a1 protein_coding protein_coding MGP_C3HHeJ_T0047363.1 MGP_C3HHeJ_G0023433.1 mouse_genomes_project 17 37453378 37457665 + MGP_C3HHeJ_P0047363 H2-M3 protein_coding protein_coding MGP_C3HHeJ_T0046521.1 MGP_C3HHeJ_G0023239.1 mouse_genomes_project 17 32390975 32399750 - MGP_C3HHeJ_P0046521 Zfp870 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045449.1 MGP_C3HHeJ_G0022972.1 mouse_genomes_project 17 20924715 20948464 + MGP_C3HHeJ_P0045449 Zfp758 protein_coding protein_coding MGP_C3HHeJ_T0045450.1 MGP_C3HHeJ_G0022972.1 mouse_genomes_project 17 20924715 20947188 + MGP_C3HHeJ_P0045450 Zfp758 protein_coding protein_coding MGP_C3HHeJ_T0045451.1 MGP_C3HHeJ_G0022972.1 mouse_genomes_project 17 20924715 20948463 + MGP_C3HHeJ_P0045451 Zfp758 protein_coding protein_coding MGP_C3HHeJ_T0045452.1 MGP_C3HHeJ_G0022972.1 mouse_genomes_project 17 20924779 20948464 + MGP_C3HHeJ_P0045452 Zfp758 protein_coding protein_coding MGP_C3HHeJ_T0046935.1 MGP_C3HHeJ_G0023327.1 mouse_genomes_project 17 34791589 34795810 - MGP_C3HHeJ_P0046935 Hspa1b protein_coding protein_coding MGP_C3HHeJ_T0101376.1 MGP_C3HHeJ_G0039435.1 mouse_genomes_project 17 73671554 73703260 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101377.1 MGP_C3HHeJ_G0039435.1 mouse_genomes_project 17 73673728 73691957 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0046570.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33120713 33123406 + MGP_C3HHeJ_P0046570 Zfp414 protein_coding protein_coding MGP_C3HHeJ_T0046571.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33120713 33123343 + MGP_C3HHeJ_P0046571 Zfp414 protein_coding protein_coding MGP_C3HHeJ_T0046572.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33120724 33122584 + Zfp414 protein_coding retained_intron MGP_C3HHeJ_T0046573.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33120744 33123091 + MGP_C3HHeJ_P0046573 Zfp414 protein_coding protein_coding MGP_C3HHeJ_T0046574.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33120837 33122312 + MGP_C3HHeJ_P0046574 Zfp414 protein_coding protein_coding MGP_C3HHeJ_T0046575.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33121824 33122398 + Zfp414 protein_coding retained_intron MGP_C3HHeJ_T0046576.1 MGP_C3HHeJ_G0023257.1 mouse_genomes_project 17 33122715 33123317 + Zfp414 protein_coding retained_intron MGP_C3HHeJ_T0006897.1 MGP_C3HHeJ_G0005668.1 mouse_genomes_project 17 76860463 76904813 - Gm26749 lincRNA lincRNA MGP_C3HHeJ_T0046772.1 MGP_C3HHeJ_G0023297.1 mouse_genomes_project 17 33945790 33961194 + MGP_C3HHeJ_P0046772 protein_coding protein_coding MGP_C3HHeJ_T0046773.1 MGP_C3HHeJ_G0023297.1 mouse_genomes_project 17 33945790 33961195 + MGP_C3HHeJ_P0046773 protein_coding protein_coding MGP_C3HHeJ_T0047648.1 MGP_C3HHeJ_G0023547.1 mouse_genomes_project 17 47649123 47666889 - MGP_C3HHeJ_P0047648 Klc4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047687.1 MGP_C3HHeJ_G0023565.1 mouse_genomes_project 17 48065308 48065569 - MGP_C3HHeJ_P0047687 Gm16494 protein_coding protein_coding MGP_C3HHeJ_T0097877.1 MGP_C3HHeJ_G0036089.1 mouse_genomes_project 17 83239242 83239634 + pseudogene pseudogene MGP_C3HHeJ_T0047360.1 MGP_C3HHeJ_G0023430.1 mouse_genomes_project 17 37407571 37408622 + MGP_C3HHeJ_P0047360 Olfr96 protein_coding protein_coding MGP_C3HHeJ_T0017365.1 MGP_C3HHeJ_G0015116.1 mouse_genomes_project 17 50646029 50647333 - Gm20540 processed_transcript processed_transcript MGP_C3HHeJ_T0010136.1 MGP_C3HHeJ_G0008269.1 mouse_genomes_project 17 66297834 66297936 + Mir6420 miRNA miRNA MGP_C3HHeJ_T0047942.1 MGP_C3HHeJ_G0023643.1 mouse_genomes_project 17 57747974 57757531 + MGP_C3HHeJ_P0047942 protein_coding protein_coding MGP_C3HHeJ_T0099088.1 MGP_C3HHeJ_G0037282.1 mouse_genomes_project 17 47209350 47209457 - Gm22474 snRNA snRNA MGP_C3HHeJ_T0048472.1 MGP_C3HHeJ_G0023836.1 mouse_genomes_project 17 91438488 91496406 + MGP_C3HHeJ_P0048472 Ppp1r21 protein_coding protein_coding MGP_C3HHeJ_T0048473.1 MGP_C3HHeJ_G0023836.1 mouse_genomes_project 17 91438586 91451802 + Ppp1r21 protein_coding retained_intron MGP_C3HHeJ_T0048474.1 MGP_C3HHeJ_G0023836.1 mouse_genomes_project 17 91470187 91474089 + Ppp1r21 protein_coding retained_intron MGP_C3HHeJ_T0048475.1 MGP_C3HHeJ_G0023836.1 mouse_genomes_project 17 91483115 91485364 + Ppp1r21 protein_coding retained_intron MGP_C3HHeJ_T0048476.1 MGP_C3HHeJ_G0023836.1 mouse_genomes_project 17 91483233 91487221 + Ppp1r21 protein_coding retained_intron MGP_C3HHeJ_T0048477.1 MGP_C3HHeJ_G0023836.1 mouse_genomes_project 17 91486770 91496404 + Ppp1r21 protein_coding retained_intron MGP_C3HHeJ_T0003651.1 MGP_C3HHeJ_G0003291.1 mouse_genomes_project 17 11367422 11368385 - Gm16049 antisense antisense MGP_C3HHeJ_T0046230.1 MGP_C3HHeJ_G0023168.1 mouse_genomes_project 17 27652877 27656416 - MGP_C3HHeJ_P0046230 Clps protein_coding protein_coding MGP_C3HHeJ_T0046231.1 MGP_C3HHeJ_G0023168.1 mouse_genomes_project 17 27652880 27656361 - MGP_C3HHeJ_P0046231 Clps protein_coding protein_coding MGP_C3HHeJ_T0045593.1 MGP_C3HHeJ_G0023018.1 mouse_genomes_project 17 22974659 22980486 - MGP_C3HHeJ_P0045593 1600002H07Rik protein_coding protein_coding MGP_C3HHeJ_T0045594.1 MGP_C3HHeJ_G0023018.1 mouse_genomes_project 17 22974844 22980547 - 1600002H07Rik protein_coding retained_intron MGP_C3HHeJ_T0045595.1 MGP_C3HHeJ_G0023018.1 mouse_genomes_project 17 22975151 22980388 - MGP_C3HHeJ_P0045595 1600002H07Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045596.1 MGP_C3HHeJ_G0023018.1 mouse_genomes_project 17 22978874 22980427 - 1600002H07Rik protein_coding retained_intron MGP_C3HHeJ_T0045597.1 MGP_C3HHeJ_G0023018.1 mouse_genomes_project 17 22979476 22980449 - 1600002H07Rik protein_coding retained_intron MGP_C3HHeJ_T0045619.1 MGP_C3HHeJ_G0023025.1 mouse_genomes_project 17 23227694 23239969 - MGP_C3HHeJ_P0045619 E4f1 protein_coding protein_coding MGP_C3HHeJ_T0045620.1 MGP_C3HHeJ_G0023025.1 mouse_genomes_project 17 23227855 23239934 - MGP_C3HHeJ_P0045620 E4f1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047409.1 MGP_C3HHeJ_G0023470.1 mouse_genomes_project 17 38931228 38937362 + MGP_C3HHeJ_P0047409 protein_coding protein_coding MGP_C3HHeJ_T0047410.1 MGP_C3HHeJ_G0023470.1 mouse_genomes_project 17 38931228 38937359 + MGP_C3HHeJ_P0047410 protein_coding protein_coding MGP_C3HHeJ_T0048079.1 MGP_C3HHeJ_G0023697.1 mouse_genomes_project 17 66479891 66636938 + MGP_C3HHeJ_P0048079 Man2a1 protein_coding protein_coding MGP_C3HHeJ_T0048080.1 MGP_C3HHeJ_G0023697.1 mouse_genomes_project 17 66594217 66595600 + Man2a1 protein_coding retained_intron MGP_C3HHeJ_T0048081.1 MGP_C3HHeJ_G0023697.1 mouse_genomes_project 17 66594416 66636666 + MGP_C3HHeJ_P0048081 Man2a1 protein_coding protein_coding MGP_C3HHeJ_T0048040.1 MGP_C3HHeJ_G0023681.1 mouse_genomes_project 17 58765453 58770151 - MGP_C3HHeJ_P0048040 Tnfsf14 protein_coding protein_coding MGP_C3HHeJ_T0045415.1 MGP_C3HHeJ_G0022952.1 mouse_genomes_project 17 19711930 19712880 + MGP_C3HHeJ_P0045415 Vmn1r237 protein_coding protein_coding MGP_C3HHeJ_T0047439.1 MGP_C3HHeJ_G0023494.1 mouse_genomes_project 17 43417752 43454189 - MGP_C3HHeJ_P0047439 Adgrf4 protein_coding protein_coding MGP_C3HHeJ_T0047440.1 MGP_C3HHeJ_G0023494.1 mouse_genomes_project 17 43417755 43454189 - MGP_C3HHeJ_P0047440 Adgrf4 protein_coding protein_coding MGP_C3HHeJ_T0047441.1 MGP_C3HHeJ_G0023494.1 mouse_genomes_project 17 43417952 43454167 - MGP_C3HHeJ_P0047441 Adgrf4 protein_coding protein_coding MGP_C3HHeJ_T0047442.1 MGP_C3HHeJ_G0023494.1 mouse_genomes_project 17 43433883 43454178 - MGP_C3HHeJ_P0047442 Adgrf4 protein_coding protein_coding MGP_C3HHeJ_T0097878.1 MGP_C3HHeJ_G0036090.1 mouse_genomes_project 17 93389419 93390032 + pseudogene pseudogene MGP_C3HHeJ_T0046617.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33330341 33345816 + MGP_C3HHeJ_P0046617 Ndufa7 protein_coding protein_coding MGP_C3HHeJ_T0046618.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33330344 33331874 + Ndufa7 protein_coding retained_intron MGP_C3HHeJ_T0046619.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33330354 33345809 + MGP_C3HHeJ_P0046619 Ndufa7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046620.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33330395 33331597 + Ndufa7 protein_coding retained_intron MGP_C3HHeJ_T0046621.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33330795 33345682 + Ndufa7 protein_coding processed_transcript MGP_C3HHeJ_T0046622.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33331371 33345686 + Ndufa7 protein_coding processed_transcript MGP_C3HHeJ_T0046623.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33334874 33345809 + Ndufa7 protein_coding processed_transcript MGP_C3HHeJ_T0046624.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33335109 33345794 + Ndufa7 protein_coding processed_transcript MGP_C3HHeJ_T0046625.1 MGP_C3HHeJ_G0023265.1 mouse_genomes_project 17 33335143 33345814 + Ndufa7 protein_coding retained_intron MGP_C3HHeJ_T0046531.1 MGP_C3HHeJ_G0023243.1 mouse_genomes_project 17 32499904 32505355 + Zfp952 protein_coding processed_transcript MGP_C3HHeJ_T0046532.1 MGP_C3HHeJ_G0023243.1 mouse_genomes_project 17 32499972 32513213 + Zfp952 protein_coding processed_transcript MGP_C3HHeJ_T0046533.1 MGP_C3HHeJ_G0023243.1 mouse_genomes_project 17 32499972 32513213 + MGP_C3HHeJ_P0046533 Zfp952 protein_coding protein_coding MGP_C3HHeJ_T0046534.1 MGP_C3HHeJ_G0023243.1 mouse_genomes_project 17 32499976 32510842 + MGP_C3HHeJ_P0046534 Zfp952 protein_coding protein_coding MGP_C3HHeJ_T0003705.1 MGP_C3HHeJ_G0003331.1 mouse_genomes_project 17 51056054 51060245 - Gm16555 antisense antisense MGP_C3HHeJ_T0048432.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90057088 90070762 - MGP_C3HHeJ_P0048432 Mcfd2 protein_coding protein_coding MGP_C3HHeJ_T0048433.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90057090 90070731 - MGP_C3HHeJ_P0048433 Mcfd2 protein_coding protein_coding MGP_C3HHeJ_T0048434.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90058218 90070707 - MGP_C3HHeJ_P0048434 Mcfd2 protein_coding protein_coding MGP_C3HHeJ_T0048435.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90058400 90070722 - MGP_C3HHeJ_P0048435 Mcfd2 protein_coding protein_coding MGP_C3HHeJ_T0048436.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90059188 90070701 - MGP_C3HHeJ_P0048436 Mcfd2 protein_coding protein_coding MGP_C3HHeJ_T0048437.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90059661 90070707 - MGP_C3HHeJ_P0048437 Mcfd2 protein_coding protein_coding MGP_C3HHeJ_T0048438.1 MGP_C3HHeJ_G0023825.1 mouse_genomes_project 17 90062410 90070690 - Mcfd2 protein_coding processed_transcript MGP_C3HHeJ_T0101859.1 MGP_C3HHeJ_G0039824.1 mouse_genomes_project 17 55189367 55189987 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046447.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31446418 31473182 + MGP_C3HHeJ_P0046447 Rrp1b protein_coding protein_coding MGP_C3HHeJ_T0046448.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31446721 31458232 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0046449.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31446747 31458225 + MGP_C3HHeJ_P0046449 Rrp1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046450.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31458594 31473173 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0046451.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31459116 31462086 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0046452.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31460334 31461965 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0046453.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31462089 31466903 + MGP_C3HHeJ_P0046453 Rrp1b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046454.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31462557 31466916 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0046455.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31466219 31467332 + Rrp1b protein_coding processed_transcript MGP_C3HHeJ_T0046456.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31468589 31470874 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0046457.1 MGP_C3HHeJ_G0023221.1 mouse_genomes_project 17 31469468 31470967 + Rrp1b protein_coding retained_intron MGP_C3HHeJ_T0006846.1 MGP_C3HHeJ_G0005632.1 mouse_genomes_project 17 30947579 30949564 + 4833413E03Rik lincRNA lincRNA MGP_C3HHeJ_T0006847.1 MGP_C3HHeJ_G0005632.1 mouse_genomes_project 17 30948645 30949567 + 4833413E03Rik lincRNA lincRNA MGP_C3HHeJ_T0099107.1 MGP_C3HHeJ_G0037301.1 mouse_genomes_project 17 97373037 97373146 - Gm22593 snRNA snRNA MGP_C3HHeJ_T0100353.1 MGP_C3HHeJ_G0038547.1 mouse_genomes_project 17 73789919 73789995 + Gm22858 snoRNA snoRNA MGP_C3HHeJ_T0047497.1 MGP_C3HHeJ_G0023516.1 mouse_genomes_project 17 46468416 46476045 - MGP_C3HHeJ_P0047497 Tmem151b protein_coding protein_coding MGP_C3HHeJ_T0047678.1 MGP_C3HHeJ_G0023559.1 mouse_genomes_project 17 47804614 47817263 - MGP_C3HHeJ_P0047678 Rpl7l1 protein_coding protein_coding MGP_C3HHeJ_T0045238.1 MGP_C3HHeJ_G0022878.1 mouse_genomes_project 17 10150663 10192307 + MGP_C3HHeJ_P0045238 Slc22a2 protein_coding protein_coding MGP_C3HHeJ_T0006896.1 MGP_C3HHeJ_G0005667.1 mouse_genomes_project 17 72989237 73530063 + lincRNA lincRNA MGP_C3HHeJ_T0048036.1 MGP_C3HHeJ_G0023677.1 mouse_genomes_project 17 58650115 58658026 - MGP_C3HHeJ_P0048036 Tubb4a protein_coding protein_coding MGP_C3HHeJ_T0101849.1 MGP_C3HHeJ_G0039814.1 mouse_genomes_project 17 37561074 37562001 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045253.1 MGP_C3HHeJ_G0022883.1 mouse_genomes_project 17 10469458 10491429 - MGP_C3HHeJ_P0045253 Pnldc1 protein_coding protein_coding MGP_C3HHeJ_T0048489.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92948373 94061051 - MGP_C3HHeJ_P0048489 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048490.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92948386 94066350 - MGP_C3HHeJ_P0048490 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048491.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92950155 93004609 - MGP_C3HHeJ_P0048491 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048492.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92950157 94061059 - MGP_C3HHeJ_P0048492 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048493.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92950553 93390399 - MGP_C3HHeJ_P0048493 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048494.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951023 93004613 - MGP_C3HHeJ_P0048494 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048495.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951050 93390413 - MGP_C3HHeJ_P0048495 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048496.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951423 94060870 - MGP_C3HHeJ_P0048496 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048497.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951607 93004353 - Nrxn1 protein_coding processed_transcript MGP_C3HHeJ_T0048498.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951630 94060870 - MGP_C3HHeJ_P0048498 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048499.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951646 94066012 - MGP_C3HHeJ_P0048499 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048500.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92951646 93390477 - MGP_C3HHeJ_P0048500 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048501.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 92952073 93124353 - MGP_C3HHeJ_P0048501 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048502.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93075218 93281695 - Nrxn1 protein_coding processed_transcript MGP_C3HHeJ_T0048503.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93124218 94066082 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0048504.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93124218 93389353 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0048505.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93298009 93532036 - MGP_C3HHeJ_P0048505 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048506.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93298250 93532185 - MGP_C3HHeJ_P0048506 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048507.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93388315 93391100 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0048508.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93477816 94060627 - Nrxn1 protein_coding processed_transcript MGP_C3HHeJ_T0048509.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93489987 93648867 - MGP_C3HHeJ_P0048509 Nrxn1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048510.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93533252 93572026 - MGP_C3HHeJ_P0048510 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048511.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93533530 93644967 - MGP_C3HHeJ_P0048511 Nrxn1 protein_coding protein_coding MGP_C3HHeJ_T0048512.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93561780 93571829 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0048513.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93644123 94066050 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0048514.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 93647369 94066070 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0048515.1 MGP_C3HHeJ_G0023841.1 mouse_genomes_project 17 94057609 94066032 - Nrxn1 protein_coding retained_intron MGP_C3HHeJ_T0047846.1 MGP_C3HHeJ_G0023603.1 mouse_genomes_project 17 50667442 50783091 - MGP_C3HHeJ_P0047846 Daam2 protein_coding protein_coding MGP_C3HHeJ_T0047847.1 MGP_C3HHeJ_G0023603.1 mouse_genomes_project 17 50687104 50783087 - MGP_C3HHeJ_P0047847 Daam2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047495.1 MGP_C3HHeJ_G0023514.1 mouse_genomes_project 17 46427912 46442923 + MGP_C3HHeJ_P0047495 Aars2 protein_coding protein_coding MGP_C3HHeJ_T0047387.1 MGP_C3HHeJ_G0023454.1 mouse_genomes_project 17 38036157 38040337 + MGP_C3HHeJ_P0047387 protein_coding protein_coding MGP_C3HHeJ_T0045335.1 MGP_C3HHeJ_G0022904.1 mouse_genomes_project 17 13292189 13311787 - MGP_C3HHeJ_P0045335 Prdm9 protein_coding protein_coding MGP_C3HHeJ_T0045336.1 MGP_C3HHeJ_G0022904.1 mouse_genomes_project 17 13293566 13304621 - Prdm9 protein_coding retained_intron MGP_C3HHeJ_T0045337.1 MGP_C3HHeJ_G0022904.1 mouse_genomes_project 17 13293679 13304153 - Prdm9 protein_coding retained_intron MGP_C3HHeJ_T0045338.1 MGP_C3HHeJ_G0022904.1 mouse_genomes_project 17 13301973 13312805 - MGP_C3HHeJ_P0045338 Prdm9 protein_coding protein_coding MGP_C3HHeJ_T0045339.1 MGP_C3HHeJ_G0022904.1 mouse_genomes_project 17 13307361 13312819 - Prdm9 protein_coding retained_intron MGP_C3HHeJ_T0045340.1 MGP_C3HHeJ_G0022904.1 mouse_genomes_project 17 13311279 13312787 - Prdm9 protein_coding processed_transcript MGP_C3HHeJ_T0100338.1 MGP_C3HHeJ_G0038532.1 mouse_genomes_project 17 29177772 29177880 - Gm22327 snoRNA snoRNA MGP_C3HHeJ_T0045382.1 MGP_C3HHeJ_G0022925.1 mouse_genomes_project 17 17757210 17789720 + MGP_C3HHeJ_P0045382 Vmn2r100 protein_coding protein_coding MGP_C3HHeJ_T0003663.1 MGP_C3HHeJ_G0003302.1 mouse_genomes_project 17 27969658 27974003 - Pnpla1os antisense antisense MGP_C3HHeJ_T0013111.1 MGP_C3HHeJ_G0011215.1 mouse_genomes_project 17 38136316 38136974 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045377.1 MGP_C3HHeJ_G0022921.1 mouse_genomes_project 17 16473415 16498603 + MGP_C3HHeJ_P0045377 protein_coding protein_coding MGP_C3HHeJ_T0045378.1 MGP_C3HHeJ_G0022921.1 mouse_genomes_project 17 16473806 16498603 + MGP_C3HHeJ_P0045378 protein_coding protein_coding MGP_C3HHeJ_T0045977.1 MGP_C3HHeJ_G0023111.1 mouse_genomes_project 17 24860230 24894033 - MGP_C3HHeJ_P0045977 Rab11fip3 protein_coding protein_coding MGP_C3HHeJ_T0045978.1 MGP_C3HHeJ_G0023111.1 mouse_genomes_project 17 24860230 24950296 - MGP_C3HHeJ_P0045978 Rab11fip3 protein_coding protein_coding MGP_C3HHeJ_T0045979.1 MGP_C3HHeJ_G0023111.1 mouse_genomes_project 17 24860239 24950528 - MGP_C3HHeJ_P0045979 Rab11fip3 protein_coding protein_coding MGP_C3HHeJ_T0045980.1 MGP_C3HHeJ_G0023111.1 mouse_genomes_project 17 24875208 24893991 - Rab11fip3 protein_coding retained_intron MGP_C3HHeJ_T0045981.1 MGP_C3HHeJ_G0023111.1 mouse_genomes_project 17 24886018 24890634 - MGP_C3HHeJ_P0045981 Rab11fip3 protein_coding protein_coding MGP_C3HHeJ_T0045982.1 MGP_C3HHeJ_G0023111.1 mouse_genomes_project 17 24910925 24950354 - Rab11fip3 protein_coding processed_transcript MGP_C3HHeJ_T0048239.1 MGP_C3HHeJ_G0023741.1 mouse_genomes_project 17 75317253 75373694 + MGP_C3HHeJ_P0048239 Lclat1 protein_coding protein_coding MGP_C3HHeJ_T0048240.1 MGP_C3HHeJ_G0023741.1 mouse_genomes_project 17 75317256 75407062 + MGP_C3HHeJ_P0048240 Lclat1 protein_coding protein_coding MGP_C3HHeJ_T0048241.1 MGP_C3HHeJ_G0023741.1 mouse_genomes_project 17 75317262 75453305 + MGP_C3HHeJ_P0048241 Lclat1 protein_coding protein_coding MGP_C3HHeJ_T0048242.1 MGP_C3HHeJ_G0023741.1 mouse_genomes_project 17 75374691 75449845 + Lclat1 protein_coding processed_transcript MGP_C3HHeJ_T0048243.1 MGP_C3HHeJ_G0023741.1 mouse_genomes_project 17 75414406 75450308 + Lclat1 protein_coding processed_transcript MGP_C3HHeJ_T0045535.1 MGP_C3HHeJ_G0023001.1 mouse_genomes_project 17 22564931 22575312 + Prss32 protein_coding processed_transcript MGP_C3HHeJ_T0045536.1 MGP_C3HHeJ_G0023001.1 mouse_genomes_project 17 22574391 22580566 + MGP_C3HHeJ_P0045536 Prss32 protein_coding protein_coding MGP_C3HHeJ_T0045537.1 MGP_C3HHeJ_G0023001.1 mouse_genomes_project 17 22574634 22580126 + MGP_C3HHeJ_P0045537 Prss32 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100355.1 MGP_C3HHeJ_G0038549.1 mouse_genomes_project 17 76256724 76256867 + Gm24475 snoRNA snoRNA MGP_C3HHeJ_T0046163.1 MGP_C3HHeJ_G0023157.1 mouse_genomes_project 17 27179772 27213191 + MGP_C3HHeJ_P0046163 Scube3 protein_coding protein_coding MGP_C3HHeJ_T0046164.1 MGP_C3HHeJ_G0023157.1 mouse_genomes_project 17 27190781 27209853 + Scube3 protein_coding processed_transcript MGP_C3HHeJ_T0046165.1 MGP_C3HHeJ_G0023157.1 mouse_genomes_project 17 27191938 27208484 + MGP_C3HHeJ_P0046165 Scube3 protein_coding protein_coding MGP_C3HHeJ_T0046166.1 MGP_C3HHeJ_G0023157.1 mouse_genomes_project 17 27199099 27211366 + Scube3 protein_coding processed_transcript MGP_C3HHeJ_T0046167.1 MGP_C3HHeJ_G0023157.1 mouse_genomes_project 17 27204147 27205987 + Scube3 protein_coding retained_intron MGP_C3HHeJ_T0046059.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25703590 25708440 + Bnip1 protein_coding retained_intron MGP_C3HHeJ_T0046060.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25703599 25708441 + Bnip1 protein_coding retained_intron MGP_C3HHeJ_T0046061.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25703601 25714804 + MGP_C3HHeJ_P0046061 Bnip1 protein_coding protein_coding MGP_C3HHeJ_T0046062.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25703601 25714456 + MGP_C3HHeJ_P0046062 Bnip1 protein_coding protein_coding MGP_C3HHeJ_T0046063.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25703629 25714795 + MGP_C3HHeJ_P0046063 Bnip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046064.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25703643 25714352 + MGP_C3HHeJ_P0046064 Bnip1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046065.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25708700 25712283 + Bnip1 protein_coding retained_intron MGP_C3HHeJ_T0046066.1 MGP_C3HHeJ_G0023130.1 mouse_genomes_project 17 25713049 25714840 + Bnip1 protein_coding retained_intron MGP_C3HHeJ_T0006850.1 MGP_C3HHeJ_G0005635.1 mouse_genomes_project 17 31827958 31829998 + lincRNA lincRNA MGP_C3HHeJ_T0045539.1 MGP_C3HHeJ_G0023003.1 mouse_genomes_project 17 22602638 22604619 + MGP_C3HHeJ_P0045539 protein_coding protein_coding MGP_C3HHeJ_T0101816.1 MGP_C3HHeJ_G0039781.1 mouse_genomes_project 17 34230030 34245881 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047392.1 MGP_C3HHeJ_G0023459.1 mouse_genomes_project 17 38161607 38184880 + MGP_C3HHeJ_P0047392 Olfr128 protein_coding protein_coding MGP_C3HHeJ_T0045488.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22371418 22372448 - Thoc6 protein_coding retained_intron MGP_C3HHeJ_T0045489.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22371422 22377314 - Thoc6 protein_coding retained_intron MGP_C3HHeJ_T0045490.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22371422 22377354 - MGP_C3HHeJ_P0045490 Thoc6 protein_coding protein_coding MGP_C3HHeJ_T0045491.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22371422 22377314 - MGP_C3HHeJ_P0045491 Thoc6 protein_coding protein_coding MGP_C3HHeJ_T0045492.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22371601 22377077 - MGP_C3HHeJ_P0045492 Thoc6 protein_coding protein_coding MGP_C3HHeJ_T0045493.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22371601 22377301 - MGP_C3HHeJ_P0045493 Thoc6 protein_coding protein_coding MGP_C3HHeJ_T0045494.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22372004 22373314 - MGP_C3HHeJ_P0045494 Thoc6 protein_coding protein_coding MGP_C3HHeJ_T0045495.1 MGP_C3HHeJ_G0022986.1 mouse_genomes_project 17 22373126 22377343 - MGP_C3HHeJ_P0045495 Thoc6 protein_coding protein_coding MGP_C3HHeJ_T0045627.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298063 23318990 - MGP_C3HHeJ_P0045627 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045628.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298349 23301987 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045629.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298349 23309154 - MGP_C3HHeJ_P0045629 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045630.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298349 23318898 - MGP_C3HHeJ_P0045630 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045631.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298349 23309154 - MGP_C3HHeJ_P0045631 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045632.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298349 23318942 - MGP_C3HHeJ_P0045632 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045633.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298349 23318902 - MGP_C3HHeJ_P0045633 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045634.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23298353 23300532 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045635.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23299561 23300011 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045636.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23299712 23301871 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045637.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23299984 23302066 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045638.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23301095 23303279 - MGP_C3HHeJ_P0045638 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045639.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23301186 23304679 - MGP_C3HHeJ_P0045639 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045640.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23301745 23318915 - MGP_C3HHeJ_P0045640 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045641.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23302571 23303178 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045642.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23302998 23318541 - MGP_C3HHeJ_P0045642 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045643.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23303181 23318898 - MGP_C3HHeJ_P0045643 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045644.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23303193 23318885 - MGP_C3HHeJ_P0045644 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045645.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23303200 23318963 - MGP_C3HHeJ_P0045645 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045646.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23303276 23318600 - MGP_C3HHeJ_P0045646 Traf7 protein_coding protein_coding MGP_C3HHeJ_T0045647.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23303860 23318898 - MGP_C3HHeJ_P0045647 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045648.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23304659 23318873 - MGP_C3HHeJ_P0045648 Traf7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045649.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23306236 23318902 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045650.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23306501 23318920 - Traf7 protein_coding processed_transcript MGP_C3HHeJ_T0045651.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23308317 23318903 - Traf7 protein_coding processed_transcript MGP_C3HHeJ_T0045652.1 MGP_C3HHeJ_G0023030.1 mouse_genomes_project 17 23308518 23318836 - Traf7 protein_coding retained_intron MGP_C3HHeJ_T0045671.1 MGP_C3HHeJ_G0023041.1 mouse_genomes_project 17 23502018 23511825 - MGP_C3HHeJ_P0045671 Tbl3 protein_coding protein_coding MGP_C3HHeJ_T0045680.1 MGP_C3HHeJ_G0023041.1 mouse_genomes_project 17 23504529 23511796 - Tbl3 protein_coding retained_intron MGP_C3HHeJ_T0045681.1 MGP_C3HHeJ_G0023041.1 mouse_genomes_project 17 23504957 23506579 - MGP_C3HHeJ_P0045681 Tbl3 protein_coding protein_coding MGP_C3HHeJ_T0045682.1 MGP_C3HHeJ_G0023041.1 mouse_genomes_project 17 23506089 23507423 - Tbl3 protein_coding retained_intron MGP_C3HHeJ_T0045683.1 MGP_C3HHeJ_G0023041.1 mouse_genomes_project 17 23508795 23509989 - Tbl3 protein_coding retained_intron MGP_C3HHeJ_T0045367.1 MGP_C3HHeJ_G0022913.1 mouse_genomes_project 17 15844015 15952035 + MGP_C3HHeJ_P0045367 Fpr3 protein_coding protein_coding MGP_C3HHeJ_T0045370.1 MGP_C3HHeJ_G0022913.1 mouse_genomes_project 17 15950828 15952035 + MGP_C3HHeJ_P0045370 Fpr3 protein_coding protein_coding MGP_C3HHeJ_T0047945.1 MGP_C3HHeJ_G0023646.1 mouse_genomes_project 17 57793024 57799202 - MGP_C3HHeJ_P0047945 Arrdc5 protein_coding protein_coding MGP_C3HHeJ_T0048119.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68290374 68406762 - MGP_C3HHeJ_P0048119 Mtcl1 protein_coding protein_coding MGP_C3HHeJ_T0048120.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68290378 68406762 - MGP_C3HHeJ_P0048120 Mtcl1 protein_coding protein_coding MGP_C3HHeJ_T0048121.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68290380 68340918 - MGP_C3HHeJ_P0048121 Mtcl1 protein_coding protein_coding MGP_C3HHeJ_T0048122.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68291070 68394401 - MGP_C3HHeJ_P0048122 Mtcl1 protein_coding protein_coding MGP_C3HHeJ_T0048123.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68297318 68299944 - Mtcl1 protein_coding retained_intron MGP_C3HHeJ_T0048124.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68301364 68332893 - Mtcl1 protein_coding retained_intron MGP_C3HHeJ_T0048125.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68307589 68316844 - Mtcl1 protein_coding processed_transcript MGP_C3HHeJ_T0048126.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68307754 68332387 - Mtcl1 protein_coding processed_transcript MGP_C3HHeJ_T0048127.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68311439 68332001 - Mtcl1 protein_coding retained_intron MGP_C3HHeJ_T0048128.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68320405 68328618 - Mtcl1 protein_coding processed_transcript MGP_C3HHeJ_T0048129.1 MGP_C3HHeJ_G0023710.1 mouse_genomes_project 17 68340736 68405381 - Mtcl1 protein_coding retained_intron MGP_C3HHeJ_T0099072.1 MGP_C3HHeJ_G0037266.1 mouse_genomes_project 17 11283289 11283396 + Gm24867 snRNA snRNA MGP_C3HHeJ_T0010096.1 MGP_C3HHeJ_G0008229.1 mouse_genomes_project 17 24641195 24641267 + Mir6966 miRNA miRNA MGP_C3HHeJ_T0048000.1 MGP_C3HHeJ_G0023658.1 mouse_genomes_project 17 58268220 58272983 - MGP_C3HHeJ_P0048000 Vmac protein_coding protein_coding MGP_C3HHeJ_T0048001.1 MGP_C3HHeJ_G0023658.1 mouse_genomes_project 17 58268220 58271205 - MGP_C3HHeJ_P0048001 Vmac protein_coding protein_coding MGP_C3HHeJ_T0047305.1 MGP_C3HHeJ_G0023414.1 mouse_genomes_project 17 37071103 37076156 + MGP_C3HHeJ_P0047305 Rnf39 protein_coding protein_coding MGP_C3HHeJ_T0047306.1 MGP_C3HHeJ_G0023414.1 mouse_genomes_project 17 37071240 37073785 + MGP_C3HHeJ_P0047306 Rnf39 protein_coding protein_coding MGP_C3HHeJ_T0047307.1 MGP_C3HHeJ_G0023414.1 mouse_genomes_project 17 37073247 37075456 + MGP_C3HHeJ_P0047307 Rnf39 protein_coding protein_coding MGP_C3HHeJ_T0046701.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33592529 33599274 + MGP_C3HHeJ_P0046701 Rxrb protein_coding protein_coding MGP_C3HHeJ_T0046702.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33592900 33598581 + MGP_C3HHeJ_P0046702 Rxrb protein_coding protein_coding MGP_C3HHeJ_T0046703.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33592913 33594923 + MGP_C3HHeJ_P0046703 Rxrb protein_coding protein_coding MGP_C3HHeJ_T0046704.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33593092 33598696 + MGP_C3HHeJ_P0046704 Rxrb protein_coding protein_coding MGP_C3HHeJ_T0046705.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33593118 33599274 + MGP_C3HHeJ_P0046705 Rxrb protein_coding protein_coding MGP_C3HHeJ_T0046706.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33594270 33596891 + Rxrb protein_coding retained_intron MGP_C3HHeJ_T0046707.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33594628 33597254 + Rxrb protein_coding retained_intron MGP_C3HHeJ_T0046708.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33597203 33598155 + Rxrb protein_coding retained_intron MGP_C3HHeJ_T0046709.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33597247 33598188 + Rxrb protein_coding retained_intron MGP_C3HHeJ_T0046710.1 MGP_C3HHeJ_G0023281.1 mouse_genomes_project 17 33597343 33598415 + Rxrb protein_coding retained_intron MGP_C3HHeJ_T0046523.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32432565 32454995 - MGP_C3HHeJ_P0046523 Cyp4f13 protein_coding protein_coding MGP_C3HHeJ_T0046524.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32432578 32454972 - MGP_C3HHeJ_P0046524 Cyp4f13 protein_coding protein_coding MGP_C3HHeJ_T0046525.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32432593 32454959 - MGP_C3HHeJ_P0046525 Cyp4f13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046526.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32433203 32433757 - Cyp4f13 protein_coding retained_intron MGP_C3HHeJ_T0046527.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32440293 32454995 - MGP_C3HHeJ_P0046527 Cyp4f13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046528.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32440505 32454953 - MGP_C3HHeJ_P0046528 Cyp4f13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046529.1 MGP_C3HHeJ_G0023241.1 mouse_genomes_project 17 32447406 32454984 - Cyp4f13 protein_coding retained_intron MGP_C3HHeJ_T0013094.1 MGP_C3HHeJ_G0011198.1 mouse_genomes_project 17 35917220 35917547 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045459.1 MGP_C3HHeJ_G0022976.1 mouse_genomes_project 17 21460941 21481946 - MGP_C3HHeJ_P0045459 Zfp945 protein_coding protein_coding MGP_C3HHeJ_T0045460.1 MGP_C3HHeJ_G0022976.1 mouse_genomes_project 17 21463280 21476531 - Zfp945 protein_coding retained_intron MGP_C3HHeJ_T0045461.1 MGP_C3HHeJ_G0022976.1 mouse_genomes_project 17 21463280 21481946 - MGP_C3HHeJ_P0045461 Zfp945 protein_coding protein_coding MGP_C3HHeJ_T0045462.1 MGP_C3HHeJ_G0022976.1 mouse_genomes_project 17 21466706 21481915 - MGP_C3HHeJ_P0045462 Zfp945 protein_coding protein_coding MGP_C3HHeJ_T0045463.1 MGP_C3HHeJ_G0022976.1 mouse_genomes_project 17 21476540 21481946 - Zfp945 protein_coding retained_intron MGP_C3HHeJ_T0047085.1 MGP_C3HHeJ_G0023365.1 mouse_genomes_project 17 35240662 35246535 + MGP_C3HHeJ_P0047085 H2-Q6 protein_coding protein_coding MGP_C3HHeJ_T0098073.1 MGP_C3HHeJ_G0036285.1 mouse_genomes_project 17 48961546 48961665 + n-R5s28 rRNA rRNA MGP_C3HHeJ_T0010100.1 MGP_C3HHeJ_G0008233.1 mouse_genomes_project 17 25874454 25874522 + Mir6968 miRNA miRNA MGP_C3HHeJ_T0101803.1 MGP_C3HHeJ_G0039768.1 mouse_genomes_project 17 19723667 19724403 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047283.1 MGP_C3HHeJ_G0023406.1 mouse_genomes_project 17 36761893 36764134 - MGP_C3HHeJ_P0047283 protein_coding protein_coding MGP_C3HHeJ_T0047848.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 50834217 50981710 + Kif6 protein_coding retained_intron MGP_C3HHeJ_T0047849.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 50834220 50898945 + MGP_C3HHeJ_P0047849 Kif6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047850.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 50834253 51154221 + MGP_C3HHeJ_P0047850 Kif6 protein_coding protein_coding MGP_C3HHeJ_T0047851.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 50938319 50981710 + Kif6 protein_coding retained_intron MGP_C3HHeJ_T0047852.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 50964117 50981712 + Kif6 protein_coding retained_intron MGP_C3HHeJ_T0047853.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 50980232 50985337 + Kif6 protein_coding retained_intron MGP_C3HHeJ_T0047854.1 MGP_C3HHeJ_G0023604.1 mouse_genomes_project 17 51129581 51154221 + Kif6 protein_coding retained_intron MGP_C3HHeJ_T0047571.1 MGP_C3HHeJ_G0023529.1 mouse_genomes_project 17 47118436 47123135 - MGP_C3HHeJ_P0047571 Mad2l1bp protein_coding protein_coding MGP_C3HHeJ_T0003660.1 MGP_C3HHeJ_G0003299.1 mouse_genomes_project 17 26636804 26638274 + Gm15420 antisense antisense MGP_C3HHeJ_T0045318.1 MGP_C3HHeJ_G0022901.1 mouse_genomes_project 17 13220723 13240791 - MGP_C3HHeJ_P0045318 Psmb1 protein_coding protein_coding MGP_C3HHeJ_T0100347.1 MGP_C3HHeJ_G0038541.1 mouse_genomes_project 17 60830243 60830364 - Gm23769 snoRNA snoRNA MGP_C3HHeJ_T0098070.1 MGP_C3HHeJ_G0036282.1 mouse_genomes_project 17 32307364 32307475 - Gm25555 rRNA rRNA MGP_C3HHeJ_T0099073.1 MGP_C3HHeJ_G0037267.1 mouse_genomes_project 17 12525344 12525408 - Gm23352 snRNA snRNA MGP_C3HHeJ_T0011343.1 MGP_C3HHeJ_G0009476.1 mouse_genomes_project 17 88302887 88302961 + Gm27610 misc_RNA misc_RNA MGP_C3HHeJ_T0045790.1 MGP_C3HHeJ_G0023065.1 mouse_genomes_project 17 23997898 24007282 + MGP_C3HHeJ_P0045790 Ccdc154 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045791.1 MGP_C3HHeJ_G0023065.1 mouse_genomes_project 17 23997898 24007282 + MGP_C3HHeJ_P0045791 Ccdc154 protein_coding protein_coding MGP_C3HHeJ_T0045792.1 MGP_C3HHeJ_G0023065.1 mouse_genomes_project 17 23997901 24007280 + MGP_C3HHeJ_P0045792 Ccdc154 protein_coding protein_coding MGP_C3HHeJ_T0045793.1 MGP_C3HHeJ_G0023065.1 mouse_genomes_project 17 23998279 24007251 + MGP_C3HHeJ_P0045793 Ccdc154 protein_coding protein_coding MGP_C3HHeJ_T0045713.1 MGP_C3HHeJ_G0023052.1 mouse_genomes_project 17 23697981 23701709 - MGP_C3HHeJ_P0045713 Nubp2 protein_coding protein_coding MGP_C3HHeJ_T0006840.1 MGP_C3HHeJ_G0005629.1 mouse_genomes_project 17 28190396 28215414 - Trp53cor1 lincRNA lincRNA MGP_C3HHeJ_T0048115.1 MGP_C3HHeJ_G0023708.1 mouse_genomes_project 17 68057031 68065959 + MGP_C3HHeJ_P0048115 Wash1 protein_coding protein_coding MGP_C3HHeJ_T0048116.1 MGP_C3HHeJ_G0023708.1 mouse_genomes_project 17 68057130 68065959 + MGP_C3HHeJ_P0048116 Wash1 protein_coding protein_coding MGP_C3HHeJ_T0045096.1 MGP_C3HHeJ_G0022830.1 mouse_genomes_project 17 391860 606752 + MGP_C3HHeJ_P0045096 Tiam2 protein_coding protein_coding MGP_C3HHeJ_T0045097.1 MGP_C3HHeJ_G0022830.1 mouse_genomes_project 17 471583 606752 + MGP_C3HHeJ_P0045097 Tiam2 protein_coding protein_coding MGP_C3HHeJ_T0047285.1 MGP_C3HHeJ_G0023408.1 mouse_genomes_project 17 36936995 36940389 + MGP_C3HHeJ_P0047285 H2-M10.6 protein_coding protein_coding MGP_C3HHeJ_T0048087.1 MGP_C3HHeJ_G0023702.1 mouse_genomes_project 17 67567062 67695931 - MGP_C3HHeJ_P0048087 Rab31 protein_coding protein_coding MGP_C3HHeJ_T0047742.1 MGP_C3HHeJ_G0023578.1 mouse_genomes_project 17 48784385 48792104 - MGP_C3HHeJ_P0047742 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013117.1 MGP_C3HHeJ_G0011221.1 mouse_genomes_project 17 38725121 38725251 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047391.1 MGP_C3HHeJ_G0023458.1 mouse_genomes_project 17 38107627 38114538 + MGP_C3HHeJ_P0047391 protein_coding protein_coding MGP_C3HHeJ_T0045836.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24218710 24280096 - MGP_C3HHeJ_P0045836 Cacna1h protein_coding protein_coding MGP_C3HHeJ_T0045837.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24218711 24279878 - MGP_C3HHeJ_P0045837 Cacna1h protein_coding unknown_likely_coding MGP_C3HHeJ_T0045838.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24218713 24280096 - MGP_C3HHeJ_P0045838 Cacna1h protein_coding protein_coding MGP_C3HHeJ_T0045839.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24218720 24280096 - MGP_C3HHeJ_P0045839 Cacna1h protein_coding protein_coding MGP_C3HHeJ_T0045840.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24221313 24224951 - MGP_C3HHeJ_P0045840 Cacna1h protein_coding protein_coding MGP_C3HHeJ_T0045841.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24221625 24224579 - MGP_C3HHeJ_P0045841 Cacna1h protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045842.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24221980 24223369 - Cacna1h protein_coding retained_intron MGP_C3HHeJ_T0045843.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24232544 24233779 - Cacna1h protein_coding retained_intron MGP_C3HHeJ_T0045844.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24236567 24280081 - Cacna1h protein_coding retained_intron MGP_C3HHeJ_T0045845.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24241945 24279591 - MGP_C3HHeJ_P0045845 Cacna1h protein_coding protein_coding MGP_C3HHeJ_T0045846.1 MGP_C3HHeJ_G0023079.1 mouse_genomes_project 17 24278146 24280096 - Cacna1h protein_coding retained_intron MGP_C3HHeJ_T0045389.1 MGP_C3HHeJ_G0022932.1 mouse_genomes_project 17 18589161 18608255 - MGP_C3HHeJ_P0045389 Vmn2r106 protein_coding protein_coding MGP_C3HHeJ_T0046144.1 MGP_C3HHeJ_G0023152.1 mouse_genomes_project 17 26859134 26873960 + MGP_C3HHeJ_P0046144 Snrpc protein_coding protein_coding MGP_C3HHeJ_T0046145.1 MGP_C3HHeJ_G0023152.1 mouse_genomes_project 17 26859294 26873964 + Snrpc protein_coding retained_intron MGP_C3HHeJ_T0010112.1 MGP_C3HHeJ_G0008245.1 mouse_genomes_project 17 33410351 33410409 - Gm27775 miRNA miRNA MGP_C3HHeJ_T0100358.1 MGP_C3HHeJ_G0038552.1 mouse_genomes_project 17 89841673 89841805 - Gm24648 snoRNA snoRNA MGP_C3HHeJ_T0047356.1 MGP_C3HHeJ_G0023426.1 mouse_genomes_project 17 37313095 37313997 - MGP_C3HHeJ_P0047356 protein_coding protein_coding MGP_C3HHeJ_T0046337.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28790384 28818591 + MGP_C3HHeJ_P0046337 Rnf8 protein_coding protein_coding MGP_C3HHeJ_T0046338.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28790416 28803886 + MGP_C3HHeJ_P0046338 Rnf8 protein_coding protein_coding MGP_C3HHeJ_T0046339.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28790448 28818514 + MGP_C3HHeJ_P0046339 Rnf8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046341.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28790484 28795153 + Rnf8 protein_coding processed_transcript MGP_C3HHeJ_T0046342.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28791731 28803919 + MGP_C3HHeJ_P0046342 Rnf8 protein_coding protein_coding MGP_C3HHeJ_T0046343.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28805481 28812764 + Rnf8 protein_coding retained_intron MGP_C3HHeJ_T0046344.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28808379 28818462 + Rnf8 protein_coding retained_intron MGP_C3HHeJ_T0046345.1 MGP_C3HHeJ_G0023193.1 mouse_genomes_project 17 28811318 28818483 + Rnf8 protein_coding retained_intron MGP_C3HHeJ_T0048232.1 MGP_C3HHeJ_G0023736.1 mouse_genomes_project 17 73896226 73905523 - MGP_C3HHeJ_P0048232 BC027072 protein_coding protein_coding MGP_C3HHeJ_T0100350.1 MGP_C3HHeJ_G0038544.1 mouse_genomes_project 17 66830311 66830443 - Gm25344 snoRNA snoRNA MGP_C3HHeJ_T0101809.1 MGP_C3HHeJ_G0039774.1 mouse_genomes_project 17 33439206 33439596 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045770.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927490 23945552 - MGP_C3HHeJ_P0045770 Telo2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045771.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927492 23945542 - Telo2 protein_coding retained_intron MGP_C3HHeJ_T0045772.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927492 23945602 - MGP_C3HHeJ_P0045772 Telo2 protein_coding protein_coding MGP_C3HHeJ_T0045773.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927499 23945540 - MGP_C3HHeJ_P0045773 Telo2 protein_coding protein_coding MGP_C3HHeJ_T0045774.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927539 23931574 - Telo2 protein_coding processed_transcript MGP_C3HHeJ_T0045775.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927547 23934905 - Telo2 protein_coding processed_transcript MGP_C3HHeJ_T0045776.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23927746 23929358 - Telo2 protein_coding processed_transcript MGP_C3HHeJ_T0045777.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23928688 23937713 - Telo2 protein_coding retained_intron MGP_C3HHeJ_T0045778.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23940462 23944827 - Telo2 protein_coding processed_transcript MGP_C3HHeJ_T0045779.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23940759 23943286 - Telo2 protein_coding processed_transcript MGP_C3HHeJ_T0045780.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23942839 23944947 - Telo2 protein_coding processed_transcript MGP_C3HHeJ_T0045781.1 MGP_C3HHeJ_G0023062.1 mouse_genomes_project 17 23943774 23945589 - Telo2 protein_coding retained_intron MGP_C3HHeJ_T0013118.1 MGP_C3HHeJ_G0011222.1 mouse_genomes_project 17 38763569 38764250 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048371.1 MGP_C3HHeJ_G0023797.1 mouse_genomes_project 17 85903208 86040226 + MGP_C3HHeJ_P0048371 Eml4 protein_coding protein_coding MGP_C3HHeJ_T0048372.1 MGP_C3HHeJ_G0023797.1 mouse_genomes_project 17 85903208 86040226 + MGP_C3HHeJ_P0048372 Eml4 protein_coding protein_coding MGP_C3HHeJ_T0048373.1 MGP_C3HHeJ_G0023797.1 mouse_genomes_project 17 85903208 86040226 + MGP_C3HHeJ_P0048373 Eml4 protein_coding protein_coding MGP_C3HHeJ_T0003657.1 MGP_C3HHeJ_G0003296.1 mouse_genomes_project 17 25467916 25475969 - 1700049J03Rik antisense antisense MGP_C3HHeJ_T0101378.1 MGP_C3HHeJ_G0039436.1 mouse_genomes_project 17 97802144 97829239 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101379.1 MGP_C3HHeJ_G0039436.1 mouse_genomes_project 17 97802156 97810945 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101380.1 MGP_C3HHeJ_G0039436.1 mouse_genomes_project 17 97802182 97829242 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101381.1 MGP_C3HHeJ_G0039436.1 mouse_genomes_project 17 97804539 97829136 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0013097.1 MGP_C3HHeJ_G0011201.1 mouse_genomes_project 17 36258424 36258640 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010142.1 MGP_C3HHeJ_G0008275.1 mouse_genomes_project 17 84761254 84762217 + miRNA miRNA MGP_C3HHeJ_T0046432.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31004650 31030931 - MGP_C3HHeJ_P0046432 Cbs protein_coding protein_coding MGP_C3HHeJ_T0046433.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31004667 31030897 - MGP_C3HHeJ_P0046433 Cbs protein_coding protein_coding MGP_C3HHeJ_T0046434.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31004668 31030897 - MGP_C3HHeJ_P0046434 Cbs protein_coding protein_coding MGP_C3HHeJ_T0046435.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31009192 31009901 - Cbs protein_coding retained_intron MGP_C3HHeJ_T0046436.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31013022 31018230 - Cbs protein_coding processed_transcript MGP_C3HHeJ_T0046437.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31013547 31015135 - Cbs protein_coding processed_transcript MGP_C3HHeJ_T0046438.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31017149 31030522 - MGP_C3HHeJ_P0046438 Cbs protein_coding protein_coding MGP_C3HHeJ_T0046439.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31017203 31030381 - MGP_C3HHeJ_P0046439 Cbs protein_coding protein_coding MGP_C3HHeJ_T0046440.1 MGP_C3HHeJ_G0023216.1 mouse_genomes_project 17 31019572 31030381 - MGP_C3HHeJ_P0046440 Cbs protein_coding protein_coding MGP_C3HHeJ_T0047417.1 MGP_C3HHeJ_G0023477.1 mouse_genomes_project 17 40578647 40587887 + MGP_C3HHeJ_P0047417 Esp38 protein_coding protein_coding MGP_C3HHeJ_T0045374.1 MGP_C3HHeJ_G0022918.1 mouse_genomes_project 17 16276419 16312216 - MGP_C3HHeJ_P0045374 Vmn2r94 protein_coding protein_coding MGP_C3HHeJ_T0013152.1 MGP_C3HHeJ_G0011256.1 mouse_genomes_project 17 81492158 81493135 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047248.1 MGP_C3HHeJ_G0023393.1 mouse_genomes_project 17 36013866 36021814 - MGP_C3HHeJ_P0047248 H2-T23 protein_coding protein_coding MGP_C3HHeJ_T0047249.1 MGP_C3HHeJ_G0023393.1 mouse_genomes_project 17 36020721 36021689 - H2-T23 protein_coding retained_intron MGP_C3HHeJ_T0047377.1 MGP_C3HHeJ_G0023444.1 mouse_genomes_project 17 37814638 37815638 - MGP_C3HHeJ_P0047377 protein_coding protein_coding MGP_C3HHeJ_T0047284.1 MGP_C3HHeJ_G0023407.1 mouse_genomes_project 17 36885102 36888537 + MGP_C3HHeJ_P0047284 H2-M10.5 protein_coding protein_coding MGP_C3HHeJ_T0013161.1 MGP_C3HHeJ_G0011265.1 mouse_genomes_project 17 94636858 94638085 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046411.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30880756 30901577 - MGP_C3HHeJ_P0046411 Wdr4 protein_coding protein_coding MGP_C3HHeJ_T0046412.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30880757 30902073 - MGP_C3HHeJ_P0046412 Wdr4 protein_coding protein_coding MGP_C3HHeJ_T0046413.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30880757 30901590 - MGP_C3HHeJ_P0046413 Wdr4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046414.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30880759 30901590 - MGP_C3HHeJ_P0046414 Wdr4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046415.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30882560 30887717 - Wdr4 protein_coding retained_intron MGP_C3HHeJ_T0046416.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30885883 30890003 - Wdr4 protein_coding retained_intron MGP_C3HHeJ_T0046417.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30889472 30899234 - Wdr4 protein_coding retained_intron MGP_C3HHeJ_T0046418.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30889960 30909216 - MGP_C3HHeJ_P0046418 Wdr4 protein_coding protein_coding MGP_C3HHeJ_T0046419.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30889970 30901600 - MGP_C3HHeJ_P0046419 Wdr4 protein_coding protein_coding MGP_C3HHeJ_T0046420.1 MGP_C3HHeJ_G0023213.1 mouse_genomes_project 17 30901764 30909276 - Wdr4 protein_coding processed_transcript MGP_C3HHeJ_T0045180.1 MGP_C3HHeJ_G0022862.1 mouse_genomes_project 17 5727933 5742438 + MGP_C3HHeJ_P0045180 Mpc1 protein_coding protein_coding MGP_C3HHeJ_T0045181.1 MGP_C3HHeJ_G0022862.1 mouse_genomes_project 17 5728821 5739180 + Mpc1 protein_coding retained_intron MGP_C3HHeJ_T0045182.1 MGP_C3HHeJ_G0022862.1 mouse_genomes_project 17 5728877 5742824 + MGP_C3HHeJ_P0045182 Mpc1 protein_coding protein_coding MGP_C3HHeJ_T0045183.1 MGP_C3HHeJ_G0022862.1 mouse_genomes_project 17 5729479 5742968 + MGP_C3HHeJ_P0045183 Mpc1 protein_coding protein_coding MGP_C3HHeJ_T0045184.1 MGP_C3HHeJ_G0022862.1 mouse_genomes_project 17 5741660 5742703 + Mpc1 protein_coding retained_intron MGP_C3HHeJ_T0045185.1 MGP_C3HHeJ_G0022862.1 mouse_genomes_project 17 5741922 5742968 + MGP_C3HHeJ_P0045185 Mpc1 protein_coding protein_coding MGP_C3HHeJ_T0047708.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586070 48691078 + MGP_C3HHeJ_P0047708 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047709.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586070 48692690 + MGP_C3HHeJ_P0047709 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047710.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586098 48690473 + MGP_C3HHeJ_P0047710 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047711.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586138 48692690 + MGP_C3HHeJ_P0047711 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047712.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586147 48692698 + MGP_C3HHeJ_P0047712 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047713.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586168 48692696 + MGP_C3HHeJ_P0047713 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047714.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586175 48691634 + MGP_C3HHeJ_P0047714 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047715.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586181 48669000 + Ccnd3 protein_coding retained_intron MGP_C3HHeJ_T0047716.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586238 48669400 + Ccnd3 protein_coding retained_intron MGP_C3HHeJ_T0047717.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586250 48684777 + MGP_C3HHeJ_P0047717 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047718.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586259 48669172 + Ccnd3 protein_coding retained_intron MGP_C3HHeJ_T0047719.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586260 48588933 + Ccnd3 protein_coding retained_intron MGP_C3HHeJ_T0047720.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48586260 48691656 + MGP_C3HHeJ_P0047720 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047721.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48684428 48691182 + Ccnd3 protein_coding retained_intron MGP_C3HHeJ_T0047722.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48684462 48692696 + MGP_C3HHeJ_P0047722 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047723.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48684521 48690587 + MGP_C3HHeJ_P0047723 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047724.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48685305 48690503 + MGP_C3HHeJ_P0047724 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047725.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48685748 48691870 + MGP_C3HHeJ_P0047725 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047726.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48689075 48692101 + MGP_C3HHeJ_P0047726 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047727.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48689331 48691719 + MGP_C3HHeJ_P0047727 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0047728.1 MGP_C3HHeJ_G0023572.1 mouse_genomes_project 17 48690171 48691113 + MGP_C3HHeJ_P0047728 Ccnd3 protein_coding protein_coding MGP_C3HHeJ_T0045268.1 MGP_C3HHeJ_G0022886.1 mouse_genomes_project 17 10505211 10527188 - MGP_C3HHeJ_P0045268 Acat3 protein_coding protein_coding MGP_C3HHeJ_T0047878.1 MGP_C3HHeJ_G0023611.1 mouse_genomes_project 17 54753379 54823550 - MGP_C3HHeJ_P0047878 Efhb protein_coding protein_coding MGP_C3HHeJ_T0046386.1 MGP_C3HHeJ_G0023207.1 mouse_genomes_project 17 30522023 30525681 - MGP_C3HHeJ_P0046386 Tff1 protein_coding protein_coding MGP_C3HHeJ_T0048035.1 MGP_C3HHeJ_G0023676.1 mouse_genomes_project 17 58636065 58648560 - MGP_C3HHeJ_P0048035 Dennd1c protein_coding protein_coding MGP_C3HHeJ_T0101823.1 MGP_C3HHeJ_G0039788.1 mouse_genomes_project 17 35926551 35931601 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046902.1 MGP_C3HHeJ_G0023321.1 mouse_genomes_project 17 34685729 34711519 - MGP_C3HHeJ_P0046902 Gm20547 protein_coding protein_coding MGP_C3HHeJ_T0046903.1 MGP_C3HHeJ_G0023321.1 mouse_genomes_project 17 34685743 34701829 - MGP_C3HHeJ_P0046903 Gm20547 protein_coding protein_coding MGP_C3HHeJ_T0046222.1 MGP_C3HHeJ_G0023165.1 mouse_genomes_project 17 27470455 27563021 - MGP_C3HHeJ_P0046222 Fkbp5 protein_coding protein_coding MGP_C3HHeJ_T0046223.1 MGP_C3HHeJ_G0023165.1 mouse_genomes_project 17 27470457 27595237 - MGP_C3HHeJ_P0046223 Fkbp5 protein_coding protein_coding MGP_C3HHeJ_T0046224.1 MGP_C3HHeJ_G0023165.1 mouse_genomes_project 17 27470465 27595237 - MGP_C3HHeJ_P0046224 Fkbp5 protein_coding protein_coding MGP_C3HHeJ_T0046225.1 MGP_C3HHeJ_G0023165.1 mouse_genomes_project 17 27473852 27500610 - Fkbp5 protein_coding processed_transcript MGP_C3HHeJ_T0046226.1 MGP_C3HHeJ_G0023165.1 mouse_genomes_project 17 27487941 27513711 - MGP_C3HHeJ_P0046226 Fkbp5 protein_coding protein_coding MGP_C3HHeJ_T0046227.1 MGP_C3HHeJ_G0023165.1 mouse_genomes_project 17 27574954 27585315 - Fkbp5 protein_coding retained_intron MGP_C3HHeJ_T0048421.1 MGP_C3HHeJ_G0023818.1 mouse_genomes_project 17 89498081 89603276 + MGP_C3HHeJ_P0048421 Epas1 protein_coding protein_coding MGP_C3HHeJ_T0048431.1 MGP_C3HHeJ_G0023824.1 mouse_genomes_project 17 89902343 89932270 + MGP_C3HHeJ_P0048431 Socs5 protein_coding protein_coding MGP_C3HHeJ_T0045423.1 MGP_C3HHeJ_G0022957.1 mouse_genomes_project 17 19962708 19969729 + MGP_C3HHeJ_P0045423 Zfp52 protein_coding protein_coding MGP_C3HHeJ_T0046210.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27417171 27420723 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0046211.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27417171 27430788 - MGP_C3HHeJ_P0046211 Tulp1 protein_coding protein_coding MGP_C3HHeJ_T0046212.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27417172 27424321 - MGP_C3HHeJ_P0046212 Tulp1 protein_coding protein_coding MGP_C3HHeJ_T0046213.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27417510 27424289 - MGP_C3HHeJ_P0046213 Tulp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046214.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27418186 27428560 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0046215.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27418194 27422033 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0046216.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27418718 27424856 - MGP_C3HHeJ_P0046216 Tulp1 protein_coding protein_coding MGP_C3HHeJ_T0046217.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27421473 27430822 - MGP_C3HHeJ_P0046217 Tulp1 protein_coding protein_coding MGP_C3HHeJ_T0046218.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27424076 27428072 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0046219.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27427278 27428597 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0046220.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27428334 27430786 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0046221.1 MGP_C3HHeJ_G0023164.1 mouse_genomes_project 17 27429325 27430779 - Tulp1 protein_coding retained_intron MGP_C3HHeJ_T0098078.1 MGP_C3HHeJ_G0036290.1 mouse_genomes_project 17 86539076 86539185 + Gm23905 rRNA rRNA MGP_C3HHeJ_T0047024.1 MGP_C3HHeJ_G0023348.1 mouse_genomes_project 17 34977688 34978226 + D17H6S53E protein_coding retained_intron MGP_C3HHeJ_T0047025.1 MGP_C3HHeJ_G0023348.1 mouse_genomes_project 17 34977701 34979985 + MGP_C3HHeJ_P0047025 D17H6S53E protein_coding protein_coding MGP_C3HHeJ_T0046580.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33137836 33178308 - MGP_C3HHeJ_P0046580 Hnrnpm protein_coding protein_coding MGP_C3HHeJ_T0046581.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33137838 33176839 - MGP_C3HHeJ_P0046581 Hnrnpm protein_coding protein_coding MGP_C3HHeJ_T0046582.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33137839 33176835 - MGP_C3HHeJ_P0046582 Hnrnpm protein_coding protein_coding MGP_C3HHeJ_T0046583.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33137842 33151876 - MGP_C3HHeJ_P0046583 Hnrnpm protein_coding protein_coding MGP_C3HHeJ_T0046584.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33137842 33176835 - MGP_C3HHeJ_P0046584 Hnrnpm protein_coding protein_coding MGP_C3HHeJ_T0046585.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33141904 33158012 - MGP_C3HHeJ_P0046585 Hnrnpm protein_coding protein_coding MGP_C3HHeJ_T0046586.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33160078 33176832 - Hnrnpm protein_coding retained_intron MGP_C3HHeJ_T0046587.1 MGP_C3HHeJ_G0023259.1 mouse_genomes_project 17 33168381 33176848 - Hnrnpm protein_coding retained_intron MGP_C3HHeJ_T0000966.1 MGP_C3HHeJ_G0000903.1 mouse_genomes_project 17 82273349 82290006 - TEC TEC MGP_C3HHeJ_T0010115.1 MGP_C3HHeJ_G0008248.1 mouse_genomes_project 17 34507848 34507915 - Gm27471 miRNA miRNA MGP_C3HHeJ_T0047416.1 MGP_C3HHeJ_G0023476.1 mouse_genomes_project 17 40229519 40232143 + MGP_C3HHeJ_P0047416 protein_coding protein_coding MGP_C3HHeJ_T0099091.1 MGP_C3HHeJ_G0037285.1 mouse_genomes_project 17 52209870 52209987 - Gm25177 snRNA snRNA MGP_C3HHeJ_T0045464.1 MGP_C3HHeJ_G0022977.1 mouse_genomes_project 17 21822853 21842175 - Zfp40 protein_coding processed_transcript MGP_C3HHeJ_T0045465.1 MGP_C3HHeJ_G0022977.1 mouse_genomes_project 17 21824181 21842166 - MGP_C3HHeJ_P0045465 Zfp40 protein_coding protein_coding MGP_C3HHeJ_T0045466.1 MGP_C3HHeJ_G0022977.1 mouse_genomes_project 17 21826245 21842216 - Zfp40 protein_coding processed_transcript MGP_C3HHeJ_T0045467.1 MGP_C3HHeJ_G0022977.1 mouse_genomes_project 17 21840310 21842217 - MGP_C3HHeJ_P0045467 Zfp40 protein_coding protein_coding MGP_C3HHeJ_T0046340.1 MGP_C3HHeJ_G0023194.1 mouse_genomes_project 17 28790470 28884968 + MGP_C3HHeJ_P0046340 Gm28043 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013089.1 MGP_C3HHeJ_G0011193.1 mouse_genomes_project 17 33701206 33701419 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046538.1 MGP_C3HHeJ_G0023246.1 mouse_genomes_project 17 32576541 32581224 - MGP_C3HHeJ_P0046538 protein_coding protein_coding MGP_C3HHeJ_T0006845.1 MGP_C3HHeJ_G0005631.1 mouse_genomes_project 17 28627692 28657642 - Gm26885 lincRNA lincRNA MGP_C3HHeJ_T0047436.1 MGP_C3HHeJ_G0023491.1 mouse_genomes_project 17 41666902 41693735 + MGP_C3HHeJ_P0047436 Mut protein_coding protein_coding MGP_C3HHeJ_T0017343.1 MGP_C3HHeJ_G0015111.1 mouse_genomes_project 17 34323760 34336272 - Gm20460 processed_transcript processed_transcript MGP_C3HHeJ_T0046244.1 MGP_C3HHeJ_G0023172.1 mouse_genomes_project 17 27799637 27857106 + MGP_C3HHeJ_P0046244 Mapk14 protein_coding protein_coding MGP_C3HHeJ_T0046245.1 MGP_C3HHeJ_G0023172.1 mouse_genomes_project 17 27799637 27849867 + MGP_C3HHeJ_P0046245 Mapk14 protein_coding protein_coding MGP_C3HHeJ_T0046246.1 MGP_C3HHeJ_G0023172.1 mouse_genomes_project 17 27799637 27857106 + MGP_C3HHeJ_P0046246 Mapk14 protein_coding protein_coding MGP_C3HHeJ_T0046247.1 MGP_C3HHeJ_G0023172.1 mouse_genomes_project 17 27799735 27836238 + MGP_C3HHeJ_P0046247 Mapk14 protein_coding protein_coding MGP_C3HHeJ_T0046248.1 MGP_C3HHeJ_G0023172.1 mouse_genomes_project 17 27800035 27857111 + MGP_C3HHeJ_P0046248 Mapk14 protein_coding protein_coding MGP_C3HHeJ_T0046249.1 MGP_C3HHeJ_G0023172.1 mouse_genomes_project 17 27850321 27855059 + Mapk14 protein_coding retained_intron MGP_C3HHeJ_T0047399.1 MGP_C3HHeJ_G0023464.1 mouse_genomes_project 17 38414036 38417518 + MGP_C3HHeJ_P0047399 Olfr133 protein_coding protein_coding MGP_C3HHeJ_T0047400.1 MGP_C3HHeJ_G0023464.1 mouse_genomes_project 17 38417144 38418234 + MGP_C3HHeJ_P0047400 Olfr133 protein_coding protein_coding MGP_C3HHeJ_T0046361.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29021450 29081614 - MGP_C3HHeJ_P0046361 Mdga1 protein_coding protein_coding MGP_C3HHeJ_T0046362.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29021452 29080866 - MGP_C3HHeJ_P0046362 Mdga1 protein_coding protein_coding MGP_C3HHeJ_T0046363.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29025532 29035907 - Mdga1 protein_coding retained_intron MGP_C3HHeJ_T0046364.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29025742 29028844 - Mdga1 protein_coding processed_transcript MGP_C3HHeJ_T0046365.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29025759 29033404 - MGP_C3HHeJ_P0046365 Mdga1 protein_coding protein_coding MGP_C3HHeJ_T0046366.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29035604 29164098 - MGP_C3HHeJ_P0046366 Mdga1 protein_coding protein_coding MGP_C3HHeJ_T0046367.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29043181 29080466 - MGP_C3HHeJ_P0046367 Mdga1 protein_coding protein_coding MGP_C3HHeJ_T0046368.1 MGP_C3HHeJ_G0023197.1 mouse_genomes_project 17 29044061 29082924 - Mdga1 protein_coding processed_transcript MGP_C3HHeJ_T0046377.1 MGP_C3HHeJ_G0023202.1 mouse_genomes_project 17 30240749 30289904 + MGP_C3HHeJ_P0046377 Glp1r protein_coding protein_coding MGP_C3HHeJ_T0045685.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23521988 23528346 + MGP_C3HHeJ_P0045685 protein_coding protein_coding MGP_C3HHeJ_T0045686.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23523938 23529403 + MGP_C3HHeJ_P0045686 protein_coding protein_coding MGP_C3HHeJ_T0045687.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23523985 23529406 + MGP_C3HHeJ_P0045687 protein_coding protein_coding MGP_C3HHeJ_T0045688.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23524126 23529402 + MGP_C3HHeJ_P0045688 protein_coding protein_coding MGP_C3HHeJ_T0045689.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23524134 23527921 + protein_coding retained_intron MGP_C3HHeJ_T0045690.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23525747 23529346 + protein_coding retained_intron MGP_C3HHeJ_T0045691.1 MGP_C3HHeJ_G0023043.1 mouse_genomes_project 17 23528059 23529402 + protein_coding retained_intron MGP_C3HHeJ_T0048046.1 MGP_C3HHeJ_G0023684.1 mouse_genomes_project 17 58824537 58839975 + MGP_C3HHeJ_P0048046 Trip10 protein_coding protein_coding MGP_C3HHeJ_T0048047.1 MGP_C3HHeJ_G0023684.1 mouse_genomes_project 17 58824634 58839426 + MGP_C3HHeJ_P0048047 Trip10 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046537.1 MGP_C3HHeJ_G0023245.1 mouse_genomes_project 17 32560305 32564214 - MGP_C3HHeJ_P0046537 4921501E09Rik protein_coding protein_coding MGP_C3HHeJ_T0101847.1 MGP_C3HHeJ_G0039812.1 mouse_genomes_project 17 37459806 37461263 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045156.1 MGP_C3HHeJ_G0022851.1 mouse_genomes_project 17 4349513 4371221 + MGP_C3HHeJ_P0045156 Rnaset2b protein_coding protein_coding MGP_C3HHeJ_T0045157.1 MGP_C3HHeJ_G0022851.1 mouse_genomes_project 17 4349560 4393178 + MGP_C3HHeJ_P0045157 Rnaset2b protein_coding protein_coding MGP_C3HHeJ_T0045158.1 MGP_C3HHeJ_G0022851.1 mouse_genomes_project 17 4349651 4391668 + MGP_C3HHeJ_P0045158 Rnaset2b protein_coding unknown_likely_coding MGP_C3HHeJ_T0010121.1 MGP_C3HHeJ_G0008254.1 mouse_genomes_project 17 35099749 35099810 + Mir6975 miRNA miRNA MGP_C3HHeJ_T0047153.1 MGP_C3HHeJ_G0023378.1 mouse_genomes_project 17 35792005 35793245 + MGP_C3HHeJ_P0047153 Ier3 protein_coding protein_coding MGP_C3HHeJ_T0045400.1 MGP_C3HHeJ_G0022943.1 mouse_genomes_project 17 19192084 19193035 + MGP_C3HHeJ_P0045400 Vmn1r230 protein_coding protein_coding MGP_C3HHeJ_T0006849.1 MGP_C3HHeJ_G0005634.1 mouse_genomes_project 17 31735027 31753875 + Gm26549 lincRNA lincRNA MGP_C3HHeJ_T0048038.1 MGP_C3HHeJ_G0023679.1 mouse_genomes_project 17 58675652 58678890 + MGP_C3HHeJ_P0048038 Tnfsf9 protein_coding protein_coding MGP_C3HHeJ_T0047275.1 MGP_C3HHeJ_G0023400.1 mouse_genomes_project 17 36354986 36358140 - MGP_C3HHeJ_P0047275 H2-M10.2 protein_coding protein_coding MGP_C3HHeJ_T0045911.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24700530 24706921 - MGP_C3HHeJ_P0045911 Rhot2 protein_coding protein_coding MGP_C3HHeJ_T0045912.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24700907 24703218 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045913.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24700909 24706533 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045914.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24701343 24702669 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045915.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24702123 24703732 - Rhot2 protein_coding processed_transcript MGP_C3HHeJ_T0045916.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703325 24704124 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045917.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703406 24705207 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045918.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703455 24704176 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045919.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703629 24706376 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045920.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703637 24705213 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045921.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703674 24706388 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045922.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24703829 24706487 - MGP_C3HHeJ_P0045922 Rhot2 protein_coding protein_coding MGP_C3HHeJ_T0045923.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24704165 24706516 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0045924.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24704321 24706595 - MGP_C3HHeJ_P0045924 Rhot2 protein_coding protein_coding MGP_C3HHeJ_T0045925.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24704325 24706639 - Rhot2 protein_coding processed_transcript MGP_C3HHeJ_T0045926.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24704451 24706612 - Rhot2 protein_coding processed_transcript MGP_C3HHeJ_T0045927.1 MGP_C3HHeJ_G0023100.1 mouse_genomes_project 17 24705844 24706600 - Rhot2 protein_coding retained_intron MGP_C3HHeJ_T0017337.1 MGP_C3HHeJ_G0015105.1 mouse_genomes_project 17 24785308 24803940 + Gm16278 processed_transcript processed_transcript MGP_C3HHeJ_T0045171.1 MGP_C3HHeJ_G0022860.1 mouse_genomes_project 17 5610920 5638851 + MGP_C3HHeJ_P0045171 Fgfr1op protein_coding protein_coding MGP_C3HHeJ_T0045172.1 MGP_C3HHeJ_G0022860.1 mouse_genomes_project 17 5610920 5639180 + MGP_C3HHeJ_P0045172 Fgfr1op protein_coding protein_coding MGP_C3HHeJ_T0045173.1 MGP_C3HHeJ_G0022860.1 mouse_genomes_project 17 5624095 5638828 + MGP_C3HHeJ_P0045173 Fgfr1op protein_coding protein_coding MGP_C3HHeJ_T0013155.1 MGP_C3HHeJ_G0011259.1 mouse_genomes_project 17 84308928 84309307 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011344.1 MGP_C3HHeJ_G0009477.1 mouse_genomes_project 17 88303185 88303508 + Gm27283 misc_RNA misc_RNA MGP_C3HHeJ_T0098079.1 MGP_C3HHeJ_G0036291.1 mouse_genomes_project 17 97818690 97818797 + Gm23964 rRNA rRNA MGP_C3HHeJ_T0048427.1 MGP_C3HHeJ_G0023822.1 mouse_genomes_project 17 89776767 89803333 - MGP_C3HHeJ_P0048427 Pigf protein_coding protein_coding MGP_C3HHeJ_T0006804.1 MGP_C3HHeJ_G0005600.1 mouse_genomes_project 17 2984008 2988173 + 3300005D01Rik lincRNA lincRNA MGP_C3HHeJ_T0006805.1 MGP_C3HHeJ_G0005600.1 mouse_genomes_project 17 2984050 2988328 + 3300005D01Rik lincRNA lincRNA MGP_C3HHeJ_T0006806.1 MGP_C3HHeJ_G0005600.1 mouse_genomes_project 17 2984842 2988520 + 3300005D01Rik lincRNA lincRNA MGP_C3HHeJ_T0006807.1 MGP_C3HHeJ_G0005600.1 mouse_genomes_project 17 2985003 2988174 + 3300005D01Rik lincRNA lincRNA MGP_C3HHeJ_T0011337.1 MGP_C3HHeJ_G0009470.1 mouse_genomes_project 17 69562028 69562305 + Gm22277 misc_RNA misc_RNA MGP_C3HHeJ_T0048134.1 MGP_C3HHeJ_G0023712.1 mouse_genomes_project 17 68516764 68557677 - MGP_C3HHeJ_P0048134 Themis3 protein_coding protein_coding MGP_C3HHeJ_T0047401.1 MGP_C3HHeJ_G0023465.1 mouse_genomes_project 17 38442232 38443171 + MGP_C3HHeJ_P0047401 Olfr134 protein_coding protein_coding MGP_C3HHeJ_T0047857.1 MGP_C3HHeJ_G0023606.1 mouse_genomes_project 17 51540460 51554656 - MGP_C3HHeJ_P0047857 Dazl protein_coding protein_coding MGP_C3HHeJ_T0047858.1 MGP_C3HHeJ_G0023606.1 mouse_genomes_project 17 51542312 51554001 - MGP_C3HHeJ_P0047858 Dazl protein_coding unknown_likely_coding MGP_C3HHeJ_T0046228.1 MGP_C3HHeJ_G0023166.1 mouse_genomes_project 17 27609818 27618412 + MGP_C3HHeJ_P0046228 Armc12 protein_coding protein_coding MGP_C3HHeJ_T0003686.1 MGP_C3HHeJ_G0003317.1 mouse_genomes_project 17 35616913 35625424 + Gm20483 antisense antisense MGP_C3HHeJ_T0047090.1 MGP_C3HHeJ_G0023366.1 mouse_genomes_project 17 35447950 35452477 + MGP_C3HHeJ_P0047090 Pou5f1 protein_coding protein_coding MGP_C3HHeJ_T0047091.1 MGP_C3HHeJ_G0023366.1 mouse_genomes_project 17 35449416 35451848 + MGP_C3HHeJ_P0047091 Pou5f1 protein_coding protein_coding MGP_C3HHeJ_T0047092.1 MGP_C3HHeJ_G0023366.1 mouse_genomes_project 17 35450519 35451848 + MGP_C3HHeJ_P0047092 Pou5f1 protein_coding protein_coding MGP_C3HHeJ_T0047093.1 MGP_C3HHeJ_G0023366.1 mouse_genomes_project 17 35450521 35451848 + MGP_C3HHeJ_P0047093 Pou5f1 protein_coding protein_coding MGP_C3HHeJ_T0047094.1 MGP_C3HHeJ_G0023366.1 mouse_genomes_project 17 35450531 35451848 + MGP_C3HHeJ_P0047094 Pou5f1 protein_coding protein_coding MGP_C3HHeJ_T0047095.1 MGP_C3HHeJ_G0023366.1 mouse_genomes_project 17 35450535 35451848 + MGP_C3HHeJ_P0047095 Pou5f1 protein_coding protein_coding MGP_C3HHeJ_T0045831.1 MGP_C3HHeJ_G0023078.1 mouse_genomes_project 17 24213713 24218866 + MGP_C3HHeJ_P0045831 Tpsg1 protein_coding protein_coding MGP_C3HHeJ_T0045832.1 MGP_C3HHeJ_G0023078.1 mouse_genomes_project 17 24213729 24218575 + MGP_C3HHeJ_P0045832 Tpsg1 protein_coding protein_coding MGP_C3HHeJ_T0045833.1 MGP_C3HHeJ_G0023078.1 mouse_genomes_project 17 24214965 24218866 + MGP_C3HHeJ_P0045833 Tpsg1 protein_coding protein_coding MGP_C3HHeJ_T0045834.1 MGP_C3HHeJ_G0023078.1 mouse_genomes_project 17 24214996 24218868 + MGP_C3HHeJ_P0045834 Tpsg1 protein_coding protein_coding MGP_C3HHeJ_T0045835.1 MGP_C3HHeJ_G0023078.1 mouse_genomes_project 17 24217434 24218811 + MGP_C3HHeJ_P0045835 Tpsg1 protein_coding protein_coding MGP_C3HHeJ_T0045273.1 MGP_C3HHeJ_G0022888.1 mouse_genomes_project 17 10602833 10611721 + MGP_C3HHeJ_P0045273 Sod2 protein_coding protein_coding MGP_C3HHeJ_T0047384.1 MGP_C3HHeJ_G0023451.1 mouse_genomes_project 17 37892035 37893192 + MGP_C3HHeJ_P0047384 Olfr121 protein_coding protein_coding MGP_C3HHeJ_T0013143.1 MGP_C3HHeJ_G0011247.1 mouse_genomes_project 17 70417311 70417842 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101833.1 MGP_C3HHeJ_G0039798.1 mouse_genomes_project 17 36398323 36400457 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045707.1 MGP_C3HHeJ_G0023050.1 mouse_genomes_project 17 23664687 23668214 + MGP_C3HHeJ_P0045707 Hagh protein_coding protein_coding MGP_C3HHeJ_T0045708.1 MGP_C3HHeJ_G0023050.1 mouse_genomes_project 17 23664690 23678231 + MGP_C3HHeJ_P0045708 Hagh protein_coding protein_coding MGP_C3HHeJ_T0045709.1 MGP_C3HHeJ_G0023050.1 mouse_genomes_project 17 23664704 23678234 + MGP_C3HHeJ_P0045709 Hagh protein_coding protein_coding MGP_C3HHeJ_T0045710.1 MGP_C3HHeJ_G0023050.1 mouse_genomes_project 17 23664778 23675021 + MGP_C3HHeJ_P0045710 Hagh protein_coding protein_coding MGP_C3HHeJ_T0045711.1 MGP_C3HHeJ_G0023050.1 mouse_genomes_project 17 23672241 23678388 + Hagh protein_coding processed_transcript MGP_C3HHeJ_T0047388.1 MGP_C3HHeJ_G0023455.1 mouse_genomes_project 17 38063869 38064810 + MGP_C3HHeJ_P0047388 Olfr123 protein_coding protein_coding MGP_C3HHeJ_T0047141.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35647547 35666662 - MGP_C3HHeJ_P0047141 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047142.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35647547 35670493 - MGP_C3HHeJ_P0047142 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047143.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35647550 35669935 - MGP_C3HHeJ_P0047143 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047144.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35647550 35670033 - MGP_C3HHeJ_P0047144 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047145.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35647550 35668059 - MGP_C3HHeJ_P0047145 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047146.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35648411 35666604 - MGP_C3HHeJ_P0047146 Ddr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047147.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35651285 35667979 - MGP_C3HHeJ_P0047147 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047148.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35656006 35669871 - MGP_C3HHeJ_P0047148 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047149.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35656034 35670515 - MGP_C3HHeJ_P0047149 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047150.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35656134 35664022 - MGP_C3HHeJ_P0047150 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047151.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35657274 35668061 - MGP_C3HHeJ_P0047151 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0047152.1 MGP_C3HHeJ_G0023377.1 mouse_genomes_project 17 35659137 35668332 - MGP_C3HHeJ_P0047152 Ddr1 protein_coding protein_coding MGP_C3HHeJ_T0048085.1 MGP_C3HHeJ_G0023700.1 mouse_genomes_project 17 67494794 67528328 - MGP_C3HHeJ_P0048085 Vapa protein_coding protein_coding MGP_C3HHeJ_T0045412.1 MGP_C3HHeJ_G0022949.1 mouse_genomes_project 17 19644966 19645956 + MGP_C3HHeJ_P0045412 Vmn1r234 protein_coding protein_coding MGP_C3HHeJ_T0045546.1 MGP_C3HHeJ_G0023008.1 mouse_genomes_project 17 22712745 22715848 - MGP_C3HHeJ_P0045546 Prss30 protein_coding protein_coding MGP_C3HHeJ_T0045547.1 MGP_C3HHeJ_G0023008.1 mouse_genomes_project 17 22713458 22715419 - MGP_C3HHeJ_P0045547 Prss30 protein_coding protein_coding MGP_C3HHeJ_T0045548.1 MGP_C3HHeJ_G0023008.1 mouse_genomes_project 17 22713685 22715792 - Prss30 protein_coding retained_intron MGP_C3HHeJ_T0045549.1 MGP_C3HHeJ_G0023008.1 mouse_genomes_project 17 22713709 22715298 - MGP_C3HHeJ_P0045549 Prss30 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045550.1 MGP_C3HHeJ_G0023008.1 mouse_genomes_project 17 22714285 22715816 - MGP_C3HHeJ_P0045550 Prss30 protein_coding protein_coding MGP_C3HHeJ_T0006819.1 MGP_C3HHeJ_G0005611.1 mouse_genomes_project 17 15312006 15318010 - Gm26873 lincRNA lincRNA MGP_C3HHeJ_T0045365.1 MGP_C3HHeJ_G0022911.1 mouse_genomes_project 17 15829869 15840102 - MGP_C3HHeJ_P0045365 Fpr1 protein_coding protein_coding MGP_C3HHeJ_T0100336.1 MGP_C3HHeJ_G0038530.1 mouse_genomes_project 17 23525696 23525830 + Snora64 snoRNA snoRNA MGP_C3HHeJ_T0047547.1 MGP_C3HHeJ_G0023524.1 mouse_genomes_project 17 46625024 46638786 + MGP_C3HHeJ_P0047547 Mrpl14 protein_coding protein_coding MGP_C3HHeJ_T0047548.1 MGP_C3HHeJ_G0023524.1 mouse_genomes_project 17 46625059 46638468 + Mrpl14 protein_coding processed_transcript MGP_C3HHeJ_T0047549.1 MGP_C3HHeJ_G0023524.1 mouse_genomes_project 17 46635710 46638690 + Mrpl14 protein_coding processed_transcript MGP_C3HHeJ_T0047826.1 MGP_C3HHeJ_G0023598.1 mouse_genomes_project 17 49590029 49605078 - MGP_C3HHeJ_P0047826 Apobec2 protein_coding protein_coding MGP_C3HHeJ_T0045665.1 MGP_C3HHeJ_G0023036.1 mouse_genomes_project 17 23456654 23457791 - MGP_C3HHeJ_P0045665 Npw protein_coding protein_coding MGP_C3HHeJ_T0098072.1 MGP_C3HHeJ_G0036284.1 mouse_genomes_project 17 48356474 48356547 + Gm26216 rRNA rRNA MGP_C3HHeJ_T0045759.1 MGP_C3HHeJ_G0023059.1 mouse_genomes_project 17 23784016 23839462 - MGP_C3HHeJ_P0045759 Cramp1l protein_coding unknown_likely_coding MGP_C3HHeJ_T0006903.1 MGP_C3HHeJ_G0005674.1 mouse_genomes_project 17 88507053 88534862 - Gm29418 lincRNA lincRNA MGP_C3HHeJ_T0047701.1 MGP_C3HHeJ_G0023569.1 mouse_genomes_project 17 48483655 48513565 - MGP_C3HHeJ_P0047701 1700001C19Rik protein_coding protein_coding MGP_C3HHeJ_T0047702.1 MGP_C3HHeJ_G0023569.1 mouse_genomes_project 17 48484296 48492638 - MGP_C3HHeJ_P0047702 1700001C19Rik protein_coding protein_coding MGP_C3HHeJ_T0047703.1 MGP_C3HHeJ_G0023569.1 mouse_genomes_project 17 48484304 48485633 - 1700001C19Rik protein_coding processed_transcript MGP_C3HHeJ_T0047704.1 MGP_C3HHeJ_G0023569.1 mouse_genomes_project 17 48484549 48513566 - 1700001C19Rik protein_coding processed_transcript MGP_C3HHeJ_T0000965.1 MGP_C3HHeJ_G0000902.1 mouse_genomes_project 17 73528193 73530063 - TEC TEC MGP_C3HHeJ_T0101810.1 MGP_C3HHeJ_G0039775.1 mouse_genomes_project 17 33646782 33647934 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046860.1 MGP_C3HHeJ_G0023315.1 mouse_genomes_project 17 34522522 34652569 - protein_coding processed_transcript MGP_C3HHeJ_T0046863.1 MGP_C3HHeJ_G0023315.1 mouse_genomes_project 17 34638863 34642045 - protein_coding retained_intron MGP_C3HHeJ_T0046864.1 MGP_C3HHeJ_G0023315.1 mouse_genomes_project 17 34638950 34663729 - MGP_C3HHeJ_P0046864 protein_coding protein_coding MGP_C3HHeJ_T0046865.1 MGP_C3HHeJ_G0023315.1 mouse_genomes_project 17 34658612 34664140 - MGP_C3HHeJ_P0046865 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046866.1 MGP_C3HHeJ_G0023315.1 mouse_genomes_project 17 34659035 34664191 - protein_coding retained_intron MGP_C3HHeJ_T0046867.1 MGP_C3HHeJ_G0023315.1 mouse_genomes_project 17 34659721 34664018 - protein_coding retained_intron MGP_C3HHeJ_T0047494.1 MGP_C3HHeJ_G0023513.1 mouse_genomes_project 17 46364841 46393872 - MGP_C3HHeJ_P0047494 Spats1 protein_coding protein_coding MGP_C3HHeJ_T0006871.1 MGP_C3HHeJ_G0005653.1 mouse_genomes_project 17 47250585 47257142 + Gm26785 lincRNA lincRNA MGP_C3HHeJ_T0099082.1 MGP_C3HHeJ_G0037276.1 mouse_genomes_project 17 34889750 34889854 + Gm23421 snRNA snRNA MGP_C3HHeJ_T0099093.1 MGP_C3HHeJ_G0037287.1 mouse_genomes_project 17 59325109 59325221 + Gm25102 snRNA snRNA MGP_C3HHeJ_T0003691.1 MGP_C3HHeJ_G0003322.1 mouse_genomes_project 17 37051785 37061587 + 1700031A10Rik antisense antisense MGP_C3HHeJ_T0003708.1 MGP_C3HHeJ_G0003334.1 mouse_genomes_project 17 58608879 58615325 + Gm17168 antisense antisense MGP_C3HHeJ_T0045109.1 MGP_C3HHeJ_G0022838.1 mouse_genomes_project 17 2577167 2578612 - MGP_C3HHeJ_P0045109 Ldhal6b protein_coding protein_coding MGP_C3HHeJ_T0101512.1 MGP_C3HHeJ_G0039496.1 mouse_genomes_project 17 41568912 41583024 + unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0045274.1 MGP_C3HHeJ_G0022889.1 mouse_genomes_project 17 10938246 10939193 - MGP_C3HHeJ_P0045274 Gpr31b protein_coding protein_coding MGP_C3HHeJ_T0101860.1 MGP_C3HHeJ_G0039825.1 mouse_genomes_project 17 55244326 55244887 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013136.1 MGP_C3HHeJ_G0011240.1 mouse_genomes_project 17 55389646 55390607 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003643.1 MGP_C3HHeJ_G0003288.1 mouse_genomes_project 17 8617402 8624612 - Gm28505 antisense antisense MGP_C3HHeJ_T0046153.1 MGP_C3HHeJ_G0023155.1 mouse_genomes_project 17 26934037 27091796 + MGP_C3HHeJ_P0046153 Anks1 protein_coding protein_coding MGP_C3HHeJ_T0046154.1 MGP_C3HHeJ_G0023155.1 mouse_genomes_project 17 26934069 27091793 + MGP_C3HHeJ_P0046154 Anks1 protein_coding protein_coding MGP_C3HHeJ_T0046155.1 MGP_C3HHeJ_G0023155.1 mouse_genomes_project 17 26934069 27091793 + MGP_C3HHeJ_P0046155 Anks1 protein_coding protein_coding MGP_C3HHeJ_T0046156.1 MGP_C3HHeJ_G0023155.1 mouse_genomes_project 17 27035664 27091795 + Anks1 protein_coding processed_transcript MGP_C3HHeJ_T0046507.1 MGP_C3HHeJ_G0023234.1 mouse_genomes_project 17 32148345 32165509 + MGP_C3HHeJ_P0046507 Cyp4f40 protein_coding protein_coding MGP_C3HHeJ_T0011341.1 MGP_C3HHeJ_G0009474.1 mouse_genomes_project 17 88299912 88300000 + Gm27435 misc_RNA misc_RNA MGP_C3HHeJ_T0099100.1 MGP_C3HHeJ_G0037294.1 mouse_genomes_project 17 82510631 82510727 + Gm22215 snRNA snRNA MGP_C3HHeJ_T0003669.1 MGP_C3HHeJ_G0003306.1 mouse_genomes_project 17 30513314 30523680 + Gm15318 antisense antisense MGP_C3HHeJ_T0003670.1 MGP_C3HHeJ_G0003306.1 mouse_genomes_project 17 30513314 30522116 + Gm15318 antisense antisense MGP_C3HHeJ_T0003671.1 MGP_C3HHeJ_G0003306.1 mouse_genomes_project 17 30513314 30522951 + Gm15318 antisense antisense MGP_C3HHeJ_T0045499.1 MGP_C3HHeJ_G0022988.1 mouse_genomes_project 17 22378918 22380920 - MGP_C3HHeJ_P0045499 Tnfrsf12a protein_coding protein_coding MGP_C3HHeJ_T0045500.1 MGP_C3HHeJ_G0022988.1 mouse_genomes_project 17 22378918 22380920 - MGP_C3HHeJ_P0045500 Tnfrsf12a protein_coding protein_coding MGP_C3HHeJ_T0003650.1 MGP_C3HHeJ_G0003290.1 mouse_genomes_project 17 11367386 11368002 - Gm16052 antisense antisense MGP_C3HHeJ_T0048153.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039178 72921690 + MGP_C3HHeJ_P0048153 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048154.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039178 72923440 + MGP_C3HHeJ_P0048154 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048155.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039215 72596399 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048156.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039215 72156918 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048157.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039220 72744307 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048158.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039249 72917762 + MGP_C3HHeJ_P0048158 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048159.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72039268 72673681 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048160.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72497996 72921829 + MGP_C3HHeJ_P0048160 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048161.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72593618 72920200 + MGP_C3HHeJ_P0048161 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048162.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72600307 72675036 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048163.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72600366 72882270 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048164.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72600366 72923436 + MGP_C3HHeJ_P0048164 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048165.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72600375 72920511 + MGP_C3HHeJ_P0048165 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048166.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72600392 72920268 + MGP_C3HHeJ_P0048166 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0048167.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72640208 72807333 + Dlgap1 protein_coding retained_intron MGP_C3HHeJ_T0048168.1 MGP_C3HHeJ_G0023722.1 mouse_genomes_project 17 72640443 72918059 + MGP_C3HHeJ_P0048168 Dlgap1 protein_coding protein_coding MGP_C3HHeJ_T0013104.1 MGP_C3HHeJ_G0011208.1 mouse_genomes_project 17 36560352 36560915 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006898.1 MGP_C3HHeJ_G0005669.1 mouse_genomes_project 17 81324415 81335303 + Gm26637 lincRNA lincRNA MGP_C3HHeJ_T0048007.1 MGP_C3HHeJ_G0023663.1 mouse_genomes_project 17 58332827 58388060 - MGP_C3HHeJ_P0048007 Rfx2 protein_coding protein_coding MGP_C3HHeJ_T0048008.1 MGP_C3HHeJ_G0023663.1 mouse_genomes_project 17 58332827 58388060 - MGP_C3HHeJ_P0048008 Rfx2 protein_coding protein_coding MGP_C3HHeJ_T0010087.1 MGP_C3HHeJ_G0008220.1 mouse_genomes_project 17 15774050 15774143 + Mirlet7e miRNA miRNA MGP_C3HHeJ_T0003680.1 MGP_C3HHeJ_G0003312.1 mouse_genomes_project 17 33775873 33781498 - Gm20496 antisense antisense MGP_C3HHeJ_T0003681.1 MGP_C3HHeJ_G0003312.1 mouse_genomes_project 17 33777337 33782966 - Gm20496 antisense antisense MGP_C3HHeJ_T0047066.1 MGP_C3HHeJ_G0023359.1 mouse_genomes_project 17 35089351 35094457 + Atp6v1g2 protein_coding retained_intron MGP_C3HHeJ_T0047067.1 MGP_C3HHeJ_G0023359.1 mouse_genomes_project 17 35090779 35093495 + MGP_C3HHeJ_P0047067 Atp6v1g2 protein_coding protein_coding MGP_C3HHeJ_T0047068.1 MGP_C3HHeJ_G0023359.1 mouse_genomes_project 17 35091569 35093594 + MGP_C3HHeJ_P0047068 Atp6v1g2 protein_coding protein_coding MGP_C3HHeJ_T0047069.1 MGP_C3HHeJ_G0023359.1 mouse_genomes_project 17 35091583 35093763 + Atp6v1g2 protein_coding retained_intron MGP_C3HHeJ_T0047070.1 MGP_C3HHeJ_G0023359.1 mouse_genomes_project 17 35092255 35094457 + MGP_C3HHeJ_P0047070 Atp6v1g2 protein_coding protein_coding MGP_C3HHeJ_T0047071.1 MGP_C3HHeJ_G0023359.1 mouse_genomes_project 17 35092349 35093657 + Atp6v1g2 protein_coding retained_intron MGP_C3HHeJ_T0045801.1 MGP_C3HHeJ_G0023068.1 mouse_genomes_project 17 24060734 24069825 + MGP_C3HHeJ_P0045801 Gm5819 protein_coding protein_coding MGP_C3HHeJ_T0047460.1 MGP_C3HHeJ_G0023503.1 mouse_genomes_project 17 44448882 44464832 - MGP_C3HHeJ_P0047460 Tdrd6 protein_coding protein_coding MGP_C3HHeJ_T0047461.1 MGP_C3HHeJ_G0023503.1 mouse_genomes_project 17 44448886 44464832 - MGP_C3HHeJ_P0047461 Tdrd6 protein_coding protein_coding MGP_C3HHeJ_T0047462.1 MGP_C3HHeJ_G0023503.1 mouse_genomes_project 17 44449106 44454034 - Tdrd6 protein_coding processed_transcript MGP_C3HHeJ_T0047463.1 MGP_C3HHeJ_G0023503.1 mouse_genomes_project 17 44449392 44464718 - MGP_C3HHeJ_P0047463 Tdrd6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048138.1 MGP_C3HHeJ_G0023715.1 mouse_genomes_project 17 69716952 69850872 + MGP_C3HHeJ_P0048138 Lama1 protein_coding protein_coding MGP_C3HHeJ_T0045471.1 MGP_C3HHeJ_G0022981.1 mouse_genomes_project 17 22245886 22253300 - MGP_C3HHeJ_P0045471 Zfp213 protein_coding protein_coding MGP_C3HHeJ_T0046626.1 MGP_C3HHeJ_G0023266.1 mouse_genomes_project 17 33350283 33353498 + protein_coding retained_intron MGP_C3HHeJ_T0006815.1 MGP_C3HHeJ_G0005607.1 mouse_genomes_project 17 12800486 12809605 + Gm28873 lincRNA lincRNA MGP_C3HHeJ_T0047172.1 MGP_C3HHeJ_G0023382.1 mouse_genomes_project 17 35833309 35838874 + MGP_C3HHeJ_P0047172 Nrm protein_coding protein_coding MGP_C3HHeJ_T0047173.1 MGP_C3HHeJ_G0023382.1 mouse_genomes_project 17 35833329 35838135 + MGP_C3HHeJ_P0047173 Nrm protein_coding protein_coding MGP_C3HHeJ_T0047174.1 MGP_C3HHeJ_G0023382.1 mouse_genomes_project 17 35833477 35838075 + MGP_C3HHeJ_P0047174 Nrm protein_coding protein_coding MGP_C3HHeJ_T0048305.1 MGP_C3HHeJ_G0023766.1 mouse_genomes_project 17 81293995 81325784 - MGP_C3HHeJ_P0048305 Eif2ak2 protein_coding protein_coding MGP_C3HHeJ_T0048306.1 MGP_C3HHeJ_G0023766.1 mouse_genomes_project 17 81296736 81300363 - Eif2ak2 protein_coding processed_transcript MGP_C3HHeJ_T0048307.1 MGP_C3HHeJ_G0023766.1 mouse_genomes_project 17 81316107 81325759 - Eif2ak2 protein_coding processed_transcript MGP_C3HHeJ_T0048308.1 MGP_C3HHeJ_G0023766.1 mouse_genomes_project 17 81320446 81325765 - Eif2ak2 protein_coding processed_transcript MGP_C3HHeJ_T0047251.1 MGP_C3HHeJ_G0023395.1 mouse_genomes_project 17 36141084 36146684 + MGP_C3HHeJ_P0047251 protein_coding protein_coding MGP_C3HHeJ_T0045348.1 MGP_C3HHeJ_G0022907.1 mouse_genomes_project 17 15461266 15551592 - MGP_C3HHeJ_P0045348 Lnpep protein_coding protein_coding MGP_C3HHeJ_T0013098.1 MGP_C3HHeJ_G0011202.1 mouse_genomes_project 17 36297239 36297279 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047438.1 MGP_C3HHeJ_G0023493.1 mouse_genomes_project 17 43306161 43359699 - MGP_C3HHeJ_P0047438 Opn5 protein_coding protein_coding MGP_C3HHeJ_T0046577.1 MGP_C3HHeJ_G0023258.1 mouse_genomes_project 17 33129689 33137314 + MGP_C3HHeJ_P0046577 Pram1 protein_coding protein_coding MGP_C3HHeJ_T0046578.1 MGP_C3HHeJ_G0023258.1 mouse_genomes_project 17 33129728 33137308 + MGP_C3HHeJ_P0046578 Pram1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046579.1 MGP_C3HHeJ_G0023258.1 mouse_genomes_project 17 33136411 33137237 + Pram1 protein_coding retained_intron MGP_C3HHeJ_T0046105.1 MGP_C3HHeJ_G0023144.1 mouse_genomes_project 17 26550887 26559234 + MGP_C3HHeJ_P0046105 protein_coding protein_coding MGP_C3HHeJ_T0046106.1 MGP_C3HHeJ_G0023144.1 mouse_genomes_project 17 26550890 26559228 + MGP_C3HHeJ_P0046106 protein_coding protein_coding MGP_C3HHeJ_T0046107.1 MGP_C3HHeJ_G0023144.1 mouse_genomes_project 17 26550908 26558585 + MGP_C3HHeJ_P0046107 protein_coding protein_coding MGP_C3HHeJ_T0046108.1 MGP_C3HHeJ_G0023144.1 mouse_genomes_project 17 26550935 26558620 + MGP_C3HHeJ_P0046108 protein_coding protein_coding MGP_C3HHeJ_T0046109.1 MGP_C3HHeJ_G0023144.1 mouse_genomes_project 17 26550935 26559223 + MGP_C3HHeJ_P0046109 protein_coding protein_coding MGP_C3HHeJ_T0047109.1 MGP_C3HHeJ_G0023371.1 mouse_genomes_project 17 35513869 35515371 + MGP_C3HHeJ_P0047109 2300002M23Rik protein_coding protein_coding MGP_C3HHeJ_T0047110.1 MGP_C3HHeJ_G0023371.1 mouse_genomes_project 17 35513904 35515349 + 2300002M23Rik protein_coding retained_intron MGP_C3HHeJ_T0047419.1 MGP_C3HHeJ_G0023479.1 mouse_genomes_project 17 40862783 40883344 - MGP_C3HHeJ_P0047419 Crisp3 protein_coding protein_coding MGP_C3HHeJ_T0006873.1 MGP_C3HHeJ_G0005655.1 mouse_genomes_project 17 49043987 49045087 + Gm15556 lincRNA lincRNA MGP_C3HHeJ_T0047920.1 MGP_C3HHeJ_G0023633.1 mouse_genomes_project 17 57505410 57533307 + MGP_C3HHeJ_P0047920 Chaf1a protein_coding protein_coding MGP_C3HHeJ_T0101793.1 MGP_C3HHeJ_G0039758.1 mouse_genomes_project 17 18652376 18659122 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047415.1 MGP_C3HHeJ_G0023475.1 mouse_genomes_project 17 40229442 40232143 + MGP_C3HHeJ_P0047415 protein_coding protein_coding MGP_C3HHeJ_T0006854.1 MGP_C3HHeJ_G0005639.1 mouse_genomes_project 17 33823808 33825010 + Gm20506 lincRNA lincRNA MGP_C3HHeJ_T0047113.1 MGP_C3HHeJ_G0023373.1 mouse_genomes_project 17 35573184 35587671 - MGP_C3HHeJ_P0047113 Gm9573 protein_coding protein_coding MGP_C3HHeJ_T0047114.1 MGP_C3HHeJ_G0023373.1 mouse_genomes_project 17 35573253 35587644 - Gm9573 protein_coding processed_transcript MGP_C3HHeJ_T0006827.1 MGP_C3HHeJ_G0005617.1 mouse_genomes_project 17 22500899 22504573 + D930048G16Rik lincRNA lincRNA MGP_C3HHeJ_T0100357.1 MGP_C3HHeJ_G0038551.1 mouse_genomes_project 17 85811037 85811172 + Gm24240 snoRNA snoRNA MGP_C3HHeJ_T0048407.1 MGP_C3HHeJ_G0023811.1 mouse_genomes_project 17 87724774 87751459 - MGP_C3HHeJ_P0048407 Prepl protein_coding protein_coding MGP_C3HHeJ_T0048408.1 MGP_C3HHeJ_G0023811.1 mouse_genomes_project 17 87724774 87751459 - MGP_C3HHeJ_P0048408 Prepl protein_coding protein_coding MGP_C3HHeJ_T0047434.1 MGP_C3HHeJ_G0023490.1 mouse_genomes_project 17 41654040 41667269 - MGP_C3HHeJ_P0047434 Cenpq protein_coding protein_coding MGP_C3HHeJ_T0047435.1 MGP_C3HHeJ_G0023490.1 mouse_genomes_project 17 41656803 41658125 - Cenpq protein_coding processed_transcript MGP_C3HHeJ_T0046312.1 MGP_C3HHeJ_G0023186.1 mouse_genomes_project 17 28472806 28483114 + Pi16 protein_coding retained_intron MGP_C3HHeJ_T0046313.1 MGP_C3HHeJ_G0023186.1 mouse_genomes_project 17 28472811 28483632 + MGP_C3HHeJ_P0046313 Pi16 protein_coding protein_coding MGP_C3HHeJ_T0046314.1 MGP_C3HHeJ_G0023186.1 mouse_genomes_project 17 28473126 28483121 + MGP_C3HHeJ_P0046314 Pi16 protein_coding protein_coding MGP_C3HHeJ_T0046315.1 MGP_C3HHeJ_G0023186.1 mouse_genomes_project 17 28473144 28483127 + MGP_C3HHeJ_P0046315 Pi16 protein_coding protein_coding MGP_C3HHeJ_T0046862.1 MGP_C3HHeJ_G0023316.1 mouse_genomes_project 17 34604399 34615590 - protein_coding retained_intron MGP_C3HHeJ_T0045474.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22294838 22308777 + MGP_C3HHeJ_P0045474 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045475.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22294838 22308770 + MGP_C3HHeJ_P0045475 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045476.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22294838 22308770 + MGP_C3HHeJ_P0045476 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045477.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22294844 22308580 + MGP_C3HHeJ_P0045477 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045478.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22294844 22308580 + MGP_C3HHeJ_P0045478 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045479.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22294923 22307459 + MGP_C3HHeJ_P0045479 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045480.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22303237 22304927 + Zscan10 protein_coding retained_intron MGP_C3HHeJ_T0045481.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22303261 22307455 + MGP_C3HHeJ_P0045481 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045482.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22303270 22307455 + MGP_C3HHeJ_P0045482 Zscan10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045483.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22303270 22307456 + MGP_C3HHeJ_P0045483 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045484.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22303271 22307456 + MGP_C3HHeJ_P0045484 Zscan10 protein_coding protein_coding MGP_C3HHeJ_T0045485.1 MGP_C3HHeJ_G0022983.1 mouse_genomes_project 17 22305246 22307455 + Zscan10 protein_coding retained_intron MGP_C3HHeJ_T0045204.1 MGP_C3HHeJ_G0022868.1 mouse_genomes_project 17 6018917 6020016 - Gm17087 protein_coding translated_processed_pseudogene MGP_C3HHeJ_T0045205.1 MGP_C3HHeJ_G0022868.1 mouse_genomes_project 17 6019464 6019935 - MGP_C3HHeJ_P0045205 Gm17087 protein_coding protein_coding MGP_C3HHeJ_T0045712.1 MGP_C3HHeJ_G0023051.1 mouse_genomes_project 17 23694102 23697341 + MGP_C3HHeJ_P0045712 Igfals protein_coding protein_coding MGP_C3HHeJ_T0003697.1 MGP_C3HHeJ_G0003325.1 mouse_genomes_project 17 45605437 45609141 + Runx2os2 antisense antisense MGP_C3HHeJ_T0003641.1 MGP_C3HHeJ_G0003287.1 mouse_genomes_project 17 8032218 8103935 + Gm16168 antisense antisense MGP_C3HHeJ_T0003642.1 MGP_C3HHeJ_G0003287.1 mouse_genomes_project 17 8032225 8087707 + Gm16168 antisense antisense MGP_C3HHeJ_T0047589.1 MGP_C3HHeJ_G0023531.1 mouse_genomes_project 17 47146580 47178334 - MGP_C3HHeJ_P0047589 Polh protein_coding protein_coding MGP_C3HHeJ_T0013128.1 MGP_C3HHeJ_G0011232.1 mouse_genomes_project 17 55084560 55085213 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048478.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91508710 91542488 + MGP_C3HHeJ_P0048478 Ston1 protein_coding protein_coding MGP_C3HHeJ_T0048479.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91508722 91551397 + Ston1 protein_coding processed_transcript MGP_C3HHeJ_T0048480.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91533206 91554742 + MGP_C3HHeJ_P0048480 Ston1 protein_coding protein_coding MGP_C3HHeJ_T0048481.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91533206 91551799 + MGP_C3HHeJ_P0048481 Ston1 protein_coding protein_coding MGP_C3HHeJ_T0048482.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91533260 91568780 + MGP_C3HHeJ_P0048482 Ston1 protein_coding protein_coding MGP_C3HHeJ_T0048483.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91533484 91544057 + Ston1 protein_coding retained_intron MGP_C3HHeJ_T0048484.1 MGP_C3HHeJ_G0023837.1 mouse_genomes_project 17 91534015 91544057 + Ston1 protein_coding retained_intron MGP_C3HHeJ_T0006852.1 MGP_C3HHeJ_G0005637.1 mouse_genomes_project 17 33439206 33440318 + lincRNA lincRNA MGP_C3HHeJ_T0099094.1 MGP_C3HHeJ_G0037288.1 mouse_genomes_project 17 61155075 61155182 - Gm23203 snRNA snRNA MGP_C3HHeJ_T0017350.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34784032 34785039 - 1110038B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0017351.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34784035 34786249 - 1110038B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0017352.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34784035 34786264 - 1110038B12Rik processed_transcript lincRNA MGP_C3HHeJ_T0017353.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34784035 34786241 - 1110038B12Rik processed_transcript lincRNA MGP_C3HHeJ_T0017354.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34784036 34786227 - 1110038B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0017355.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34784037 34786261 - 1110038B12Rik processed_transcript lincRNA MGP_C3HHeJ_T0017356.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34785238 34786261 - 1110038B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0017357.1 MGP_C3HHeJ_G0015113.1 mouse_genomes_project 17 34785386 34786255 - 1110038B12Rik processed_transcript retained_intron MGP_C3HHeJ_T0047499.1 MGP_C3HHeJ_G0023518.1 mouse_genomes_project 17 46491499 46495110 + MGP_C3HHeJ_P0047499 Slc35b2 protein_coding protein_coding MGP_C3HHeJ_T0101815.1 MGP_C3HHeJ_G0039780.1 mouse_genomes_project 17 34130233 34161667 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047893.1 MGP_C3HHeJ_G0023618.1 mouse_genomes_project 17 55676935 55703484 - MGP_C3HHeJ_P0047893 Slc5a7 protein_coding protein_coding MGP_C3HHeJ_T0006830.1 MGP_C3HHeJ_G0005620.1 mouse_genomes_project 17 25786624 25817491 - Gm17382 lincRNA lincRNA MGP_C3HHeJ_T0045975.1 MGP_C3HHeJ_G0023110.1 mouse_genomes_project 17 24828601 24856868 - MGP_C3HHeJ_P0045975 Capn15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045976.1 MGP_C3HHeJ_G0023110.1 mouse_genomes_project 17 24829795 24856875 - MGP_C3HHeJ_P0045976 Capn15 protein_coding protein_coding MGP_C3HHeJ_T0003716.1 MGP_C3HHeJ_G0003340.1 mouse_genomes_project 17 73868860 73869829 - Gm15641 antisense antisense MGP_C3HHeJ_T0047792.1 MGP_C3HHeJ_G0023588.1 mouse_genomes_project 17 49314198 49330283 - MGP_C3HHeJ_P0047792 protein_coding protein_coding MGP_C3HHeJ_T0048485.1 MGP_C3HHeJ_G0023838.1 mouse_genomes_project 17 91574926 91626812 + MGP_C3HHeJ_P0048485 Gtf2a1l protein_coding protein_coding MGP_C3HHeJ_T0048486.1 MGP_C3HHeJ_G0023838.1 mouse_genomes_project 17 91574962 91603296 + MGP_C3HHeJ_P0048486 Gtf2a1l protein_coding protein_coding MGP_C3HHeJ_T0045658.1 MGP_C3HHeJ_G0023032.1 mouse_genomes_project 17 23340892 23393488 + MGP_C3HHeJ_P0045658 Pkd1 protein_coding protein_coding MGP_C3HHeJ_T0045659.1 MGP_C3HHeJ_G0023032.1 mouse_genomes_project 17 23341205 23382433 + MGP_C3HHeJ_P0045659 Pkd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010128.1 MGP_C3HHeJ_G0008261.1 mouse_genomes_project 17 47560195 47560258 - Mir6976 miRNA miRNA MGP_C3HHeJ_T0048465.1 MGP_C3HHeJ_G0023834.1 mouse_genomes_project 17 90873758 90950235 - MGP_C3HHeJ_P0048465 Fbxo11 protein_coding protein_coding MGP_C3HHeJ_T0048466.1 MGP_C3HHeJ_G0023834.1 mouse_genomes_project 17 90874269 90891208 - MGP_C3HHeJ_P0048466 Fbxo11 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048467.1 MGP_C3HHeJ_G0023834.1 mouse_genomes_project 17 90876064 90883829 - Fbxo11 protein_coding retained_intron MGP_C3HHeJ_T0048283.1 MGP_C3HHeJ_G0023755.1 mouse_genomes_project 17 77007206 77152054 + MGP_C3HHeJ_P0048283 Ttc27 protein_coding protein_coding MGP_C3HHeJ_T0006822.1 MGP_C3HHeJ_G0005614.1 mouse_genomes_project 17 21409044 21444992 - Gm16386 lincRNA lincRNA MGP_C3HHeJ_T0046544.1 MGP_C3HHeJ_G0023249.1 mouse_genomes_project 17 32697995 32701100 + MGP_C3HHeJ_P0046544 protein_coding protein_coding MGP_C3HHeJ_T0011326.1 MGP_C3HHeJ_G0009459.1 mouse_genomes_project 17 28192663 28192834 + Gm27599 misc_RNA misc_RNA MGP_C3HHeJ_T0046485.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31842087 31855070 - MGP_C3HHeJ_P0046485 Rasal3 protein_coding protein_coding MGP_C3HHeJ_T0046486.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31842089 31855046 - MGP_C3HHeJ_P0046486 Rasal3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046487.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31842098 31855055 - Rasal3 protein_coding retained_intron MGP_C3HHeJ_T0046488.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31842345 31842937 - Rasal3 protein_coding retained_intron MGP_C3HHeJ_T0046489.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31842352 31855068 - MGP_C3HHeJ_P0046489 Rasal3 protein_coding protein_coding MGP_C3HHeJ_T0046490.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31842401 31855024 - MGP_C3HHeJ_P0046490 Rasal3 protein_coding protein_coding MGP_C3HHeJ_T0046491.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31844067 31845155 - Rasal3 protein_coding retained_intron MGP_C3HHeJ_T0046492.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31845351 31846800 - Rasal3 protein_coding retained_intron MGP_C3HHeJ_T0046493.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31846995 31848208 - Rasal3 protein_coding retained_intron MGP_C3HHeJ_T0046494.1 MGP_C3HHeJ_G0023228.1 mouse_genomes_project 17 31850282 31855068 - Rasal3 protein_coding retained_intron MGP_C3HHeJ_T0048148.1 MGP_C3HHeJ_G0023719.1 mouse_genomes_project 17 71223678 71358804 + MGP_C3HHeJ_P0048148 Epb41l3 protein_coding protein_coding MGP_C3HHeJ_T0048149.1 MGP_C3HHeJ_G0023719.1 mouse_genomes_project 17 71223678 71358804 + MGP_C3HHeJ_P0048149 Epb41l3 protein_coding protein_coding MGP_C3HHeJ_T0048150.1 MGP_C3HHeJ_G0023719.1 mouse_genomes_project 17 71273324 71358810 + MGP_C3HHeJ_P0048150 Epb41l3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048391.1 MGP_C3HHeJ_G0023805.1 mouse_genomes_project 17 87248138 87280400 + MGP_C3HHeJ_P0048391 Dync2li1 protein_coding protein_coding MGP_C3HHeJ_T0047683.1 MGP_C3HHeJ_G0023563.1 mouse_genomes_project 17 47954849 47970983 + MGP_C3HHeJ_P0047683 Prph2 protein_coding protein_coding MGP_C3HHeJ_T0047684.1 MGP_C3HHeJ_G0023563.1 mouse_genomes_project 17 47954868 47966397 + Prph2 protein_coding retained_intron MGP_C3HHeJ_T0046553.1 MGP_C3HHeJ_G0023254.1 mouse_genomes_project 17 32920100 32921473 + MGP_C3HHeJ_P0046553 Actl9 protein_coding protein_coding MGP_C3HHeJ_T0045418.1 MGP_C3HHeJ_G0022954.1 mouse_genomes_project 17 19831171 19843631 + MGP_C3HHeJ_P0045418 Zfp54 protein_coding protein_coding MGP_C3HHeJ_T0045419.1 MGP_C3HHeJ_G0022954.1 mouse_genomes_project 17 19831177 19843145 + MGP_C3HHeJ_P0045419 Zfp54 protein_coding protein_coding MGP_C3HHeJ_T0045420.1 MGP_C3HHeJ_G0022954.1 mouse_genomes_project 17 19831202 19841936 + MGP_C3HHeJ_P0045420 Zfp54 protein_coding protein_coding MGP_C3HHeJ_T0100351.1 MGP_C3HHeJ_G0038545.1 mouse_genomes_project 17 73779644 73779729 + Snord92 snoRNA snoRNA MGP_C3HHeJ_T0046095.1 MGP_C3HHeJ_G0023140.1 mouse_genomes_project 17 26081383 26092625 - MGP_C3HHeJ_P0046095 Uqcc2 protein_coding protein_coding MGP_C3HHeJ_T0046096.1 MGP_C3HHeJ_G0023140.1 mouse_genomes_project 17 26081388 26092331 - Uqcc2 protein_coding processed_transcript MGP_C3HHeJ_T0046097.1 MGP_C3HHeJ_G0023140.1 mouse_genomes_project 17 26081390 26092610 - MGP_C3HHeJ_P0046097 Uqcc2 protein_coding protein_coding MGP_C3HHeJ_T0046098.1 MGP_C3HHeJ_G0023140.1 mouse_genomes_project 17 26081390 26092337 - MGP_C3HHeJ_P0046098 Uqcc2 protein_coding protein_coding MGP_C3HHeJ_T0048237.1 MGP_C3HHeJ_G0023740.1 mouse_genomes_project 17 75112729 75138869 + MGP_C3HHeJ_P0048237 Lbh protein_coding protein_coding MGP_C3HHeJ_T0048238.1 MGP_C3HHeJ_G0023740.1 mouse_genomes_project 17 75116305 75135000 + MGP_C3HHeJ_P0048238 Lbh protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045349.1 MGP_C3HHeJ_G0022908.1 mouse_genomes_project 17 15625595 15663706 + MGP_C3HHeJ_P0045349 protein_coding protein_coding MGP_C3HHeJ_T0047908.1 MGP_C3HHeJ_G0023629.1 mouse_genomes_project 17 57449104 57459458 + MGP_C3HHeJ_P0047908 Fsd1 protein_coding protein_coding MGP_C3HHeJ_T0047432.1 MGP_C3HHeJ_G0023488.1 mouse_genomes_project 17 41590405 41595469 - MGP_C3HHeJ_P0047432 9130008F23Rik protein_coding protein_coding MGP_C3HHeJ_T0045439.1 MGP_C3HHeJ_G0022967.1 mouse_genomes_project 17 20410422 20437309 + MGP_C3HHeJ_P0045439 Zfp943 protein_coding protein_coding MGP_C3HHeJ_T0045440.1 MGP_C3HHeJ_G0022967.1 mouse_genomes_project 17 20410422 20439715 + MGP_C3HHeJ_P0045440 Zfp943 protein_coding protein_coding MGP_C3HHeJ_T0045441.1 MGP_C3HHeJ_G0022967.1 mouse_genomes_project 17 20410447 20547099 + MGP_C3HHeJ_P0045441 Zfp943 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045442.1 MGP_C3HHeJ_G0022967.1 mouse_genomes_project 17 20457004 20462880 + Zfp943 protein_coding processed_transcript MGP_C3HHeJ_T0046597.1 MGP_C3HHeJ_G0023261.1 mouse_genomes_project 17 33232916 33251554 - MGP_C3HHeJ_P0046597 Rab11b protein_coding unknown_likely_coding MGP_C3HHeJ_T0046598.1 MGP_C3HHeJ_G0023261.1 mouse_genomes_project 17 33232918 33251822 - MGP_C3HHeJ_P0046598 Rab11b protein_coding protein_coding MGP_C3HHeJ_T0046599.1 MGP_C3HHeJ_G0023261.1 mouse_genomes_project 17 33239648 33251776 - Rab11b protein_coding processed_transcript MGP_C3HHeJ_T0048422.1 MGP_C3HHeJ_G0023819.1 mouse_genomes_project 17 89688521 89693543 + MGP_C3HHeJ_P0048422 Tmem247 protein_coding protein_coding MGP_C3HHeJ_T0048423.1 MGP_C3HHeJ_G0023819.1 mouse_genomes_project 17 89689584 89693550 + MGP_C3HHeJ_P0048423 Tmem247 protein_coding protein_coding MGP_C3HHeJ_T0047402.1 MGP_C3HHeJ_G0023466.1 mouse_genomes_project 17 38492124 38493203 + MGP_C3HHeJ_P0047402 Olfr135 protein_coding protein_coding MGP_C3HHeJ_T0045865.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24577390 24585859 - MGP_C3HHeJ_P0045865 Chtf18 protein_coding protein_coding MGP_C3HHeJ_T0045866.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24577390 24585811 - MGP_C3HHeJ_P0045866 Chtf18 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045867.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24577494 24585806 - Chtf18 protein_coding retained_intron MGP_C3HHeJ_T0045868.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24577510 24579366 - MGP_C3HHeJ_P0045868 Chtf18 protein_coding protein_coding MGP_C3HHeJ_T0045869.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24577511 24578416 - MGP_C3HHeJ_P0045869 Chtf18 protein_coding protein_coding MGP_C3HHeJ_T0045870.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24578733 24579363 - Chtf18 protein_coding retained_intron MGP_C3HHeJ_T0045871.1 MGP_C3HHeJ_G0023085.1 mouse_genomes_project 17 24584015 24585850 - MGP_C3HHeJ_P0045871 Chtf18 protein_coding protein_coding MGP_C3HHeJ_T0099080.1 MGP_C3HHeJ_G0037274.1 mouse_genomes_project 17 33220926 33221002 + Gm22943 snRNA snRNA MGP_C3HHeJ_T0047084.1 MGP_C3HHeJ_G0023364.1 mouse_genomes_project 17 35240660 35246508 + MGP_C3HHeJ_P0047084 H2-Q4 protein_coding protein_coding MGP_C3HHeJ_T0013087.1 MGP_C3HHeJ_G0011191.1 mouse_genomes_project 17 33525724 33525987 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013156.1 MGP_C3HHeJ_G0011260.1 mouse_genomes_project 17 87549047 87549591 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047888.1 MGP_C3HHeJ_G0023615.1 mouse_genomes_project 17 55048550 55063101 - MGP_C3HHeJ_P0047888 Sgol1 protein_coding protein_coding MGP_C3HHeJ_T0047889.1 MGP_C3HHeJ_G0023615.1 mouse_genomes_project 17 55061328 55063054 - Sgol1 protein_coding processed_transcript MGP_C3HHeJ_T0047890.1 MGP_C3HHeJ_G0023615.1 mouse_genomes_project 17 55061475 55063046 - Sgol1 protein_coding processed_transcript MGP_C3HHeJ_T0048455.1 MGP_C3HHeJ_G0023829.1 mouse_genomes_project 17 90480922 90497534 + MGP_C3HHeJ_P0048455 Epcam protein_coding protein_coding MGP_C3HHeJ_T0046084.1 MGP_C3HHeJ_G0023137.1 mouse_genomes_project 17 25913990 25988088 + MGP_C3HHeJ_P0046084 Ggnbp1 protein_coding protein_coding MGP_C3HHeJ_T0046085.1 MGP_C3HHeJ_G0023137.1 mouse_genomes_project 17 25967691 25976141 + Ggnbp1 protein_coding retained_intron MGP_C3HHeJ_T0046086.1 MGP_C3HHeJ_G0023137.1 mouse_genomes_project 17 25967702 25988088 + MGP_C3HHeJ_P0046086 Ggnbp1 protein_coding protein_coding MGP_C3HHeJ_T0046087.1 MGP_C3HHeJ_G0023137.1 mouse_genomes_project 17 25967718 25972161 + Ggnbp1 protein_coding processed_transcript MGP_C3HHeJ_T0046092.1 MGP_C3HHeJ_G0023137.1 mouse_genomes_project 17 25978726 25988088 + MGP_C3HHeJ_P0046092 Ggnbp1 protein_coding protein_coding MGP_C3HHeJ_T0046093.1 MGP_C3HHeJ_G0023137.1 mouse_genomes_project 17 25979844 25986517 + Ggnbp1 protein_coding retained_intron MGP_C3HHeJ_T0046229.1 MGP_C3HHeJ_G0023167.1 mouse_genomes_project 17 27638547 27647250 + MGP_C3HHeJ_P0046229 Clpsl2 protein_coding protein_coding MGP_C3HHeJ_T0013075.1 MGP_C3HHeJ_G0011179.1 mouse_genomes_project 17 21353809 21354227 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045875.1 MGP_C3HHeJ_G0023089.1 mouse_genomes_project 17 24634326 24643179 + MGP_C3HHeJ_P0045875 Narfl protein_coding protein_coding MGP_C3HHeJ_T0045876.1 MGP_C3HHeJ_G0023089.1 mouse_genomes_project 17 24634326 24643720 + MGP_C3HHeJ_P0045876 Narfl protein_coding protein_coding MGP_C3HHeJ_T0045877.1 MGP_C3HHeJ_G0023089.1 mouse_genomes_project 17 24634357 24635776 + Narfl protein_coding retained_intron MGP_C3HHeJ_T0045878.1 MGP_C3HHeJ_G0023089.1 mouse_genomes_project 17 24634367 24639901 + MGP_C3HHeJ_P0045878 Narfl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045879.1 MGP_C3HHeJ_G0023089.1 mouse_genomes_project 17 24634369 24643184 + Narfl protein_coding retained_intron MGP_C3HHeJ_T0045880.1 MGP_C3HHeJ_G0023089.1 mouse_genomes_project 17 24637210 24639981 + Narfl protein_coding retained_intron MGP_C3HHeJ_T0046387.1 MGP_C3HHeJ_G0023208.1 mouse_genomes_project 17 30540501 30558980 - MGP_C3HHeJ_P0046387 Tmprss3 protein_coding protein_coding MGP_C3HHeJ_T0046388.1 MGP_C3HHeJ_G0023208.1 mouse_genomes_project 17 30540501 30560206 - MGP_C3HHeJ_P0046388 Tmprss3 protein_coding protein_coding MGP_C3HHeJ_T0013151.1 MGP_C3HHeJ_G0011255.1 mouse_genomes_project 17 81292223 81293388 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046547.1 MGP_C3HHeJ_G0023252.1 mouse_genomes_project 17 32819019 32846961 - MGP_C3HHeJ_P0046547 Zfp81 protein_coding protein_coding MGP_C3HHeJ_T0047418.1 MGP_C3HHeJ_G0023478.1 mouse_genomes_project 17 40853534 40855126 - MGP_C3HHeJ_P0047418 Pgk2 protein_coding protein_coding MGP_C3HHeJ_T0045216.1 MGP_C3HHeJ_G0022871.1 mouse_genomes_project 17 7723633 7846516 - MGP_C3HHeJ_P0045216 Qk protein_coding protein_coding MGP_C3HHeJ_T0045217.1 MGP_C3HHeJ_G0022871.1 mouse_genomes_project 17 7727339 7846516 - MGP_C3HHeJ_P0045217 Qk protein_coding protein_coding MGP_C3HHeJ_T0006817.1 MGP_C3HHeJ_G0005609.1 mouse_genomes_project 17 13114951 13120753 + A930024N18Rik lincRNA lincRNA MGP_C3HHeJ_T0047043.1 MGP_C3HHeJ_G0023351.1 mouse_genomes_project 17 35000081 35016689 - MGP_C3HHeJ_P0047043 Prrc2a protein_coding protein_coding MGP_C3HHeJ_T0047044.1 MGP_C3HHeJ_G0023351.1 mouse_genomes_project 17 35000095 35014762 - MGP_C3HHeJ_P0047044 Prrc2a protein_coding protein_coding MGP_C3HHeJ_T0047045.1 MGP_C3HHeJ_G0023351.1 mouse_genomes_project 17 35000184 35001371 - Prrc2a protein_coding retained_intron MGP_C3HHeJ_T0047046.1 MGP_C3HHeJ_G0023351.1 mouse_genomes_project 17 35001337 35001957 - Prrc2a protein_coding retained_intron MGP_C3HHeJ_T0047047.1 MGP_C3HHeJ_G0023351.1 mouse_genomes_project 17 35003993 35005053 - Prrc2a protein_coding retained_intron MGP_C3HHeJ_T0047048.1 MGP_C3HHeJ_G0023351.1 mouse_genomes_project 17 35008925 35016627 - Prrc2a protein_coding processed_transcript MGP_C3HHeJ_T0047737.1 MGP_C3HHeJ_G0023576.1 mouse_genomes_project 17 48724959 48784385 + MGP_C3HHeJ_P0047737 Usp49 protein_coding protein_coding MGP_C3HHeJ_T0047738.1 MGP_C3HHeJ_G0023576.1 mouse_genomes_project 17 48745876 48769795 + MGP_C3HHeJ_P0047738 Usp49 protein_coding protein_coding MGP_C3HHeJ_T0047739.1 MGP_C3HHeJ_G0023576.1 mouse_genomes_project 17 48770330 48778667 + MGP_C3HHeJ_P0047739 Usp49 protein_coding protein_coding MGP_C3HHeJ_T0047740.1 MGP_C3HHeJ_G0023576.1 mouse_genomes_project 17 48770911 48778339 + MGP_C3HHeJ_P0047740 Usp49 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011340.1 MGP_C3HHeJ_G0009473.1 mouse_genomes_project 17 82686743 82686990 - Gm25706 misc_RNA misc_RNA MGP_C3HHeJ_T0099089.1 MGP_C3HHeJ_G0037283.1 mouse_genomes_project 17 48953481 48953651 - Gm25201 snRNA snRNA MGP_C3HHeJ_T0047296.1 MGP_C3HHeJ_G0023410.1 mouse_genomes_project 17 36988138 36994839 - MGP_C3HHeJ_P0047296 Trim15 protein_coding protein_coding MGP_C3HHeJ_T0047297.1 MGP_C3HHeJ_G0023410.1 mouse_genomes_project 17 36988140 36994862 - MGP_C3HHeJ_P0047297 Trim15 protein_coding protein_coding MGP_C3HHeJ_T0047298.1 MGP_C3HHeJ_G0023410.1 mouse_genomes_project 17 36988758 36994398 - MGP_C3HHeJ_P0047298 Trim15 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045721.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23703792 23711012 - MGP_C3HHeJ_P0045721 Eme2 protein_coding protein_coding MGP_C3HHeJ_T0045722.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23708107 23711044 - MGP_C3HHeJ_P0045722 Eme2 protein_coding protein_coding MGP_C3HHeJ_T0045724.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23708110 23711016 - MGP_C3HHeJ_P0045724 Eme2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045725.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23708435 23711035 - Eme2 protein_coding retained_intron MGP_C3HHeJ_T0045726.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23708735 23710141 - Eme2 protein_coding retained_intron MGP_C3HHeJ_T0045727.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23709094 23711012 - Eme2 protein_coding retained_intron MGP_C3HHeJ_T0045728.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23709317 23711019 - Eme2 protein_coding retained_intron MGP_C3HHeJ_T0045729.1 MGP_C3HHeJ_G0023054.1 mouse_genomes_project 17 23709702 23710982 - Eme2 protein_coding retained_intron MGP_C3HHeJ_T0099075.1 MGP_C3HHeJ_G0037269.1 mouse_genomes_project 17 23131172 23131279 - Gm25618 snRNA snRNA MGP_C3HHeJ_T0010131.1 MGP_C3HHeJ_G0008264.1 mouse_genomes_project 17 57731745 57731856 + Mir7b miRNA miRNA MGP_C3HHeJ_T0048248.1 MGP_C3HHeJ_G0023744.1 mouse_genomes_project 17 76050315 76077378 + MGP_C3HHeJ_P0048248 Ehd3 protein_coding protein_coding MGP_C3HHeJ_T0013096.1 MGP_C3HHeJ_G0011200.1 mouse_genomes_project 17 36209811 36210355 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006868.1 MGP_C3HHeJ_G0005651.1 mouse_genomes_project 17 46349516 46357964 + B230354K17Rik lincRNA lincRNA MGP_C3HHeJ_T0046695.1 MGP_C3HHeJ_G0023280.1 mouse_genomes_project 17 33588984 33592408 - MGP_C3HHeJ_P0046695 Slc39a7 protein_coding protein_coding MGP_C3HHeJ_T0046696.1 MGP_C3HHeJ_G0023280.1 mouse_genomes_project 17 33588986 33592262 - MGP_C3HHeJ_P0046696 Slc39a7 protein_coding protein_coding MGP_C3HHeJ_T0046697.1 MGP_C3HHeJ_G0023280.1 mouse_genomes_project 17 33588990 33592366 - Slc39a7 protein_coding retained_intron MGP_C3HHeJ_T0046698.1 MGP_C3HHeJ_G0023280.1 mouse_genomes_project 17 33590563 33591746 - Slc39a7 protein_coding retained_intron MGP_C3HHeJ_T0046699.1 MGP_C3HHeJ_G0023280.1 mouse_genomes_project 17 33590891 33592374 - MGP_C3HHeJ_P0046699 Slc39a7 protein_coding protein_coding MGP_C3HHeJ_T0046700.1 MGP_C3HHeJ_G0023280.1 mouse_genomes_project 17 33591310 33592400 - Slc39a7 protein_coding processed_transcript MGP_C3HHeJ_T0048439.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90087502 90191910 + MGP_C3HHeJ_P0048439 Ttc7 protein_coding protein_coding MGP_C3HHeJ_T0048440.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90087509 90097550 + Ttc7 protein_coding processed_transcript MGP_C3HHeJ_T0048441.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90087521 90180267 + MGP_C3HHeJ_P0048441 Ttc7 protein_coding protein_coding MGP_C3HHeJ_T0048442.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90087567 90170288 + MGP_C3HHeJ_P0048442 Ttc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048443.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90097431 90190227 + MGP_C3HHeJ_P0048443 Ttc7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048444.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90115917 90136399 + Ttc7 protein_coding processed_transcript MGP_C3HHeJ_T0048445.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90129591 90141127 + Ttc7 protein_coding retained_intron MGP_C3HHeJ_T0048446.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90136535 90146803 + Ttc7 protein_coding processed_transcript MGP_C3HHeJ_T0048447.1 MGP_C3HHeJ_G0023826.1 mouse_genomes_project 17 90188993 90191910 + Ttc7 protein_coding processed_transcript MGP_C3HHeJ_T0045783.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23966704 23997542 + MGP_C3HHeJ_P0045783 Clcn7 protein_coding protein_coding MGP_C3HHeJ_T0045784.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23966778 23980998 + Clcn7 protein_coding retained_intron MGP_C3HHeJ_T0045785.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23970808 23997536 + MGP_C3HHeJ_P0045785 Clcn7 protein_coding protein_coding MGP_C3HHeJ_T0045786.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23980263 23985047 + MGP_C3HHeJ_P0045786 Clcn7 protein_coding protein_coding MGP_C3HHeJ_T0045787.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23980770 23986861 + Clcn7 protein_coding processed_transcript MGP_C3HHeJ_T0045788.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23985634 23992373 + MGP_C3HHeJ_P0045788 Clcn7 protein_coding protein_coding MGP_C3HHeJ_T0045789.1 MGP_C3HHeJ_G0023064.1 mouse_genomes_project 17 23994119 23995180 + Clcn7 protein_coding retained_intron MGP_C3HHeJ_T0047060.1 MGP_C3HHeJ_G0023355.1 mouse_genomes_project 17 35056008 35058638 - MGP_C3HHeJ_P0047060 Tnf protein_coding protein_coding MGP_C3HHeJ_T0047061.1 MGP_C3HHeJ_G0023355.1 mouse_genomes_project 17 35056134 35058635 - MGP_C3HHeJ_P0047061 Tnf protein_coding protein_coding MGP_C3HHeJ_T0048019.1 MGP_C3HHeJ_G0023670.1 mouse_genomes_project 17 58565905 58566467 - MGP_C3HHeJ_P0048019 Pspn protein_coding protein_coding MGP_C3HHeJ_T0047355.1 MGP_C3HHeJ_G0023425.1 mouse_genomes_project 17 37313067 37314115 - MGP_C3HHeJ_P0047355 Olfr93 protein_coding protein_coding MGP_C3HHeJ_T0045660.1 MGP_C3HHeJ_G0023033.1 mouse_genomes_project 17 23392910 23430513 - MGP_C3HHeJ_P0045660 Tsc2 protein_coding protein_coding MGP_C3HHeJ_T0045661.1 MGP_C3HHeJ_G0023033.1 mouse_genomes_project 17 23393482 23430482 - MGP_C3HHeJ_P0045661 Tsc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006860.1 MGP_C3HHeJ_G0005645.1 mouse_genomes_project 17 35736757 35746017 + 4833427F10Rik lincRNA lincRNA MGP_C3HHeJ_T0047318.1 MGP_C3HHeJ_G0023418.1 mouse_genomes_project 17 37109674 37113207 - MGP_C3HHeJ_P0047318 2410137M14Rik protein_coding protein_coding MGP_C3HHeJ_T0047319.1 MGP_C3HHeJ_G0023418.1 mouse_genomes_project 17 37109811 37113187 - MGP_C3HHeJ_P0047319 2410137M14Rik protein_coding protein_coding MGP_C3HHeJ_T0046323.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28517955 28536732 + MGP_C3HHeJ_P0046323 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046324.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28517973 28522100 + protein_coding processed_transcript MGP_C3HHeJ_T0046325.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28517983 28524039 + protein_coding retained_intron MGP_C3HHeJ_T0046326.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28517983 28536625 + MGP_C3HHeJ_P0046326 protein_coding protein_coding MGP_C3HHeJ_T0046327.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28522477 28524994 + protein_coding retained_intron MGP_C3HHeJ_T0046328.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28525999 28532088 + protein_coding retained_intron MGP_C3HHeJ_T0046329.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28526011 28531460 + protein_coding retained_intron MGP_C3HHeJ_T0046330.1 MGP_C3HHeJ_G0023188.1 mouse_genomes_project 17 28533597 28535520 + protein_coding processed_transcript MGP_C3HHeJ_T0045186.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761275 5778315 + Sft2d1 protein_coding retained_intron MGP_C3HHeJ_T0045187.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761275 5778315 + MGP_C3HHeJ_P0045187 Sft2d1 protein_coding protein_coding MGP_C3HHeJ_T0045188.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761282 5844354 + Sft2d1 protein_coding processed_transcript MGP_C3HHeJ_T0045189.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761295 5777929 + MGP_C3HHeJ_P0045189 Sft2d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045190.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761312 5777882 + Sft2d1 protein_coding processed_transcript MGP_C3HHeJ_T0045191.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761342 5778313 + MGP_C3HHeJ_P0045191 Sft2d1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045192.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5761348 5768378 + Sft2d1 protein_coding retained_intron MGP_C3HHeJ_T0045194.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5768898 5774607 + Sft2d1 protein_coding retained_intron MGP_C3HHeJ_T0045195.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5770717 5777936 + Sft2d1 protein_coding retained_intron MGP_C3HHeJ_T0045196.1 MGP_C3HHeJ_G0022863.1 mouse_genomes_project 17 5774529 5778313 + Sft2d1 protein_coding retained_intron MGP_C3HHeJ_T0048147.1 MGP_C3HHeJ_G0023718.1 mouse_genomes_project 17 70894297 70900318 + MGP_C3HHeJ_P0048147 Tmem200c protein_coding protein_coding MGP_C3HHeJ_T0045540.1 MGP_C3HHeJ_G0023004.1 mouse_genomes_project 17 22602642 22604619 + MGP_C3HHeJ_P0045540 protein_coding protein_coding MGP_C3HHeJ_T0000956.1 MGP_C3HHeJ_G0000893.1 mouse_genomes_project 17 53099099 53103878 - TEC TEC MGP_C3HHeJ_T0047562.1 MGP_C3HHeJ_G0023527.1 mouse_genomes_project 17 47081942 47099031 + MGP_C3HHeJ_P0047562 Mrps18a protein_coding protein_coding MGP_C3HHeJ_T0047563.1 MGP_C3HHeJ_G0023527.1 mouse_genomes_project 17 47081951 47093248 + Mrps18a protein_coding retained_intron MGP_C3HHeJ_T0047564.1 MGP_C3HHeJ_G0023527.1 mouse_genomes_project 17 47081952 47095986 + MGP_C3HHeJ_P0047564 Mrps18a protein_coding protein_coding MGP_C3HHeJ_T0047566.1 MGP_C3HHeJ_G0023527.1 mouse_genomes_project 17 47092923 47098991 + Mrps18a protein_coding processed_transcript MGP_C3HHeJ_T0047567.1 MGP_C3HHeJ_G0023527.1 mouse_genomes_project 17 47095395 47097844 + Mrps18a protein_coding retained_intron MGP_C3HHeJ_T0047568.1 MGP_C3HHeJ_G0023527.1 mouse_genomes_project 17 47095578 47098914 + Mrps18a protein_coding retained_intron MGP_C3HHeJ_T0046785.1 MGP_C3HHeJ_G0023300.1 mouse_genomes_project 17 34065827 34073014 - MGP_C3HHeJ_P0046785 Btnl4 protein_coding protein_coding MGP_C3HHeJ_T0099104.1 MGP_C3HHeJ_G0037298.1 mouse_genomes_project 17 87243655 87243764 + Gm26066 snRNA snRNA MGP_C3HHeJ_T0047906.1 MGP_C3HHeJ_G0023628.1 mouse_genomes_project 17 57432614 57438765 + MGP_C3HHeJ_P0047906 Shd protein_coding protein_coding MGP_C3HHeJ_T0047907.1 MGP_C3HHeJ_G0023628.1 mouse_genomes_project 17 57432656 57438777 + MGP_C3HHeJ_P0047907 Shd protein_coding unknown_likely_coding MGP_C3HHeJ_T0045414.1 MGP_C3HHeJ_G0022951.1 mouse_genomes_project 17 19685021 19686142 + MGP_C3HHeJ_P0045414 Vmn1r236 protein_coding protein_coding MGP_C3HHeJ_T0047660.1 MGP_C3HHeJ_G0023550.1 mouse_genomes_project 17 47689817 47698026 - MGP_C3HHeJ_P0047660 Rrp36 protein_coding protein_coding MGP_C3HHeJ_T0006869.1 MGP_C3HHeJ_G0005652.1 mouse_genomes_project 17 46677361 46733833 + lincRNA lincRNA MGP_C3HHeJ_T0006870.1 MGP_C3HHeJ_G0005652.1 mouse_genomes_project 17 46699715 46741757 + lincRNA lincRNA MGP_C3HHeJ_T0013066.1 MGP_C3HHeJ_G0011170.1 mouse_genomes_project 17 8444532 8444752 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006867.1 MGP_C3HHeJ_G0005650.1 mouse_genomes_project 17 38068475 38072374 + Gm20524 lincRNA lincRNA MGP_C3HHeJ_T0046034.1 MGP_C3HHeJ_G0023122.1 mouse_genomes_project 17 25185886 25186669 - MGP_C3HHeJ_P0046034 protein_coding protein_coding MGP_C3HHeJ_T0046036.1 MGP_C3HHeJ_G0023122.1 mouse_genomes_project 17 25185927 25186533 - protein_coding retained_intron MGP_C3HHeJ_T0047964.1 MGP_C3HHeJ_G0023650.1 mouse_genomes_project 17 58040318 58041554 - MGP_C3HHeJ_P0047964 Znrf4 protein_coding protein_coding MGP_C3HHeJ_T0099081.1 MGP_C3HHeJ_G0037275.1 mouse_genomes_project 17 33498321 33498426 + Gm23111 snRNA snRNA MGP_C3HHeJ_T0046848.1 MGP_C3HHeJ_G0023310.1 mouse_genomes_project 17 34339779 34343142 + MGP_C3HHeJ_P0046848 Prrt1 protein_coding protein_coding MGP_C3HHeJ_T0046101.1 MGP_C3HHeJ_G0023143.1 mouse_genomes_project 17 26413386 26493684 - MGP_C3HHeJ_P0046101 Grm4 protein_coding protein_coding MGP_C3HHeJ_T0046102.1 MGP_C3HHeJ_G0023143.1 mouse_genomes_project 17 26416903 26503783 - MGP_C3HHeJ_P0046102 Grm4 protein_coding protein_coding MGP_C3HHeJ_T0046103.1 MGP_C3HHeJ_G0023143.1 mouse_genomes_project 17 26442340 26463927 - Grm4 protein_coding retained_intron MGP_C3HHeJ_T0046104.1 MGP_C3HHeJ_G0023143.1 mouse_genomes_project 17 26443812 26463678 - Grm4 protein_coding processed_transcript MGP_C3HHeJ_T0045424.1 MGP_C3HHeJ_G0022958.1 mouse_genomes_project 17 19974715 19996298 + MGP_C3HHeJ_P0045424 Zfp948 protein_coding protein_coding MGP_C3HHeJ_T0047108.1 MGP_C3HHeJ_G0023370.1 mouse_genomes_project 17 35496642 35501693 + MGP_C3HHeJ_P0047108 Cdsn protein_coding protein_coding MGP_C3HHeJ_T0048326.1 MGP_C3HHeJ_G0023772.1 mouse_genomes_project 17 81495949 81534433 + MGP_C3HHeJ_P0048326 Qpct protein_coding protein_coding MGP_C3HHeJ_T0045552.1 MGP_C3HHeJ_G0023010.1 mouse_genomes_project 17 22768937 22769361 + MGP_C3HHeJ_P0045552 Gm5225 protein_coding protein_coding MGP_C3HHeJ_T0010132.1 MGP_C3HHeJ_G0008265.1 mouse_genomes_project 17 57942420 57942484 - Mir6977 miRNA miRNA MGP_C3HHeJ_T0048301.1 MGP_C3HHeJ_G0023763.1 mouse_genomes_project 17 81189955 81276732 - MGP_C3HHeJ_P0048301 Heatr5b protein_coding protein_coding MGP_C3HHeJ_T0045565.1 MGP_C3HHeJ_G0023014.1 mouse_genomes_project 17 22905089 22913022 - Amdhd2 protein_coding retained_intron MGP_C3HHeJ_T0045566.1 MGP_C3HHeJ_G0023014.1 mouse_genomes_project 17 22905089 22905996 - Amdhd2 protein_coding processed_transcript MGP_C3HHeJ_T0045567.1 MGP_C3HHeJ_G0023014.1 mouse_genomes_project 17 22905089 22913666 - MGP_C3HHeJ_P0045567 Amdhd2 protein_coding protein_coding MGP_C3HHeJ_T0045568.1 MGP_C3HHeJ_G0023014.1 mouse_genomes_project 17 22905091 22906849 - MGP_C3HHeJ_P0045568 Amdhd2 protein_coding protein_coding MGP_C3HHeJ_T0045569.1 MGP_C3HHeJ_G0023014.1 mouse_genomes_project 17 22907598 22912602 - MGP_C3HHeJ_P0045569 Amdhd2 protein_coding protein_coding MGP_C3HHeJ_T0045570.1 MGP_C3HHeJ_G0023014.1 mouse_genomes_project 17 22911503 22912985 - Amdhd2 protein_coding retained_intron MGP_C3HHeJ_T0048425.1 MGP_C3HHeJ_G0023821.1 mouse_genomes_project 17 89741544 89779581 + MGP_C3HHeJ_P0048425 Rhoq protein_coding protein_coding MGP_C3HHeJ_T0048426.1 MGP_C3HHeJ_G0023821.1 mouse_genomes_project 17 89741754 89774610 + MGP_C3HHeJ_P0048426 Rhoq protein_coding protein_coding MGP_C3HHeJ_T0045168.1 MGP_C3HHeJ_G0022857.1 mouse_genomes_project 17 5335100 5337929 + MGP_C3HHeJ_P0045168 protein_coding protein_coding MGP_C3HHeJ_T0047299.1 MGP_C3HHeJ_G0023411.1 mouse_genomes_project 17 36997223 37005463 + MGP_C3HHeJ_P0047299 Trim10 protein_coding protein_coding MGP_C3HHeJ_T0048334.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82506604 82540130 - MGP_C3HHeJ_P0048334 Hnrnpll protein_coding protein_coding MGP_C3HHeJ_T0048335.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82506604 82540023 - MGP_C3HHeJ_P0048335 Hnrnpll protein_coding protein_coding MGP_C3HHeJ_T0048336.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82506954 82540023 - MGP_C3HHeJ_P0048336 Hnrnpll protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048337.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82507458 82512674 - Hnrnpll protein_coding retained_intron MGP_C3HHeJ_T0048338.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82514266 82539990 - Hnrnpll protein_coding retained_intron MGP_C3HHeJ_T0048339.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82522854 82539931 - Hnrnpll protein_coding retained_intron MGP_C3HHeJ_T0048340.1 MGP_C3HHeJ_G0023778.1 mouse_genomes_project 17 82529040 82540064 - Hnrnpll protein_coding retained_intron MGP_C3HHeJ_T0045543.1 MGP_C3HHeJ_G0023006.1 mouse_genomes_project 17 22679649 22684727 + MGP_C3HHeJ_P0045543 Sbp protein_coding protein_coding MGP_C3HHeJ_T0045544.1 MGP_C3HHeJ_G0023006.1 mouse_genomes_project 17 22680047 22684718 + MGP_C3HHeJ_P0045544 Sbp protein_coding protein_coding MGP_C3HHeJ_T0047454.1 MGP_C3HHeJ_G0023502.1 mouse_genomes_project 17 44395365 44433325 + MGP_C3HHeJ_P0047454 Pla2g7 protein_coding protein_coding MGP_C3HHeJ_T0047455.1 MGP_C3HHeJ_G0023502.1 mouse_genomes_project 17 44395536 44445709 + MGP_C3HHeJ_P0047455 Pla2g7 protein_coding protein_coding MGP_C3HHeJ_T0047456.1 MGP_C3HHeJ_G0023502.1 mouse_genomes_project 17 44395742 44427605 + MGP_C3HHeJ_P0047456 Pla2g7 protein_coding protein_coding MGP_C3HHeJ_T0047457.1 MGP_C3HHeJ_G0023502.1 mouse_genomes_project 17 44395902 44422483 + Pla2g7 protein_coding processed_transcript MGP_C3HHeJ_T0047458.1 MGP_C3HHeJ_G0023502.1 mouse_genomes_project 17 44395940 44440772 + MGP_C3HHeJ_P0047458 Pla2g7 protein_coding protein_coding MGP_C3HHeJ_T0047459.1 MGP_C3HHeJ_G0023502.1 mouse_genomes_project 17 44395982 44441147 + Pla2g7 protein_coding retained_intron MGP_C3HHeJ_T0100335.1 MGP_C3HHeJ_G0038529.1 mouse_genomes_project 17 23523551 23523679 - Snora78 snoRNA snoRNA MGP_C3HHeJ_T0006901.1 MGP_C3HHeJ_G0005672.1 mouse_genomes_project 17 86438035 86441329 - C430042M11Rik lincRNA lincRNA MGP_C3HHeJ_T0045469.1 MGP_C3HHeJ_G0022979.1 mouse_genomes_project 17 22060721 22076116 + MGP_C3HHeJ_P0045469 protein_coding protein_coding MGP_C3HHeJ_T0046750.1 MGP_C3HHeJ_G0023289.1 mouse_genomes_project 17 33774280 33778229 + MGP_C3HHeJ_P0046750 Psmb8 protein_coding protein_coding MGP_C3HHeJ_T0046751.1 MGP_C3HHeJ_G0023289.1 mouse_genomes_project 17 33774349 33778764 + MGP_C3HHeJ_P0046751 Psmb8 protein_coding protein_coding MGP_C3HHeJ_T0046752.1 MGP_C3HHeJ_G0023289.1 mouse_genomes_project 17 33775166 33778734 + Psmb8 protein_coding retained_intron MGP_C3HHeJ_T0045517.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22501029 22524263 + MGP_C3HHeJ_P0045517 Srrm2 protein_coding protein_coding MGP_C3HHeJ_T0045518.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22517918 22545088 + MGP_C3HHeJ_P0045518 Srrm2 protein_coding protein_coding MGP_C3HHeJ_T0045519.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22517952 22545093 + MGP_C3HHeJ_P0045519 Srrm2 protein_coding protein_coding MGP_C3HHeJ_T0045520.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22523664 22527498 + MGP_C3HHeJ_P0045520 Srrm2 protein_coding protein_coding MGP_C3HHeJ_T0045521.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22523844 22524455 + Srrm2 protein_coding retained_intron MGP_C3HHeJ_T0045522.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22529351 22531607 + MGP_C3HHeJ_P0045522 Srrm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045523.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22530905 22535488 + Srrm2 protein_coding retained_intron MGP_C3HHeJ_T0045524.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22538303 22541524 + Srrm2 protein_coding processed_transcript MGP_C3HHeJ_T0045525.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22540382 22541656 + MGP_C3HHeJ_P0045525 Srrm2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045526.1 MGP_C3HHeJ_G0022997.1 mouse_genomes_project 17 22542516 22543319 + Srrm2 protein_coding retained_intron MGP_C3HHeJ_T0047860.1 MGP_C3HHeJ_G0023608.1 mouse_genomes_project 17 52012104 52314210 - MGP_C3HHeJ_P0047860 Tbc1d5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047861.1 MGP_C3HHeJ_G0023608.1 mouse_genomes_project 17 52012110 52479283 - MGP_C3HHeJ_P0047861 Tbc1d5 protein_coding protein_coding MGP_C3HHeJ_T0101807.1 MGP_C3HHeJ_G0039772.1 mouse_genomes_project 17 32459414 32466385 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046499.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 31991562 32013607 + MGP_C3HHeJ_P0046499 Cyp4f16 protein_coding protein_coding MGP_C3HHeJ_T0046500.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 31991573 32013606 + MGP_C3HHeJ_P0046500 Cyp4f16 protein_coding protein_coding MGP_C3HHeJ_T0046501.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 31991581 32013607 + MGP_C3HHeJ_P0046501 Cyp4f16 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046502.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 31991599 32113236 + Cyp4f16 protein_coding processed_transcript MGP_C3HHeJ_T0046503.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 31991605 31999714 + Cyp4f16 protein_coding retained_intron MGP_C3HHeJ_T0046504.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 32001812 32113038 + Cyp4f16 protein_coding retained_intron MGP_C3HHeJ_T0046505.1 MGP_C3HHeJ_G0023232.1 mouse_genomes_project 17 32006417 32013085 + Cyp4f16 protein_coding retained_intron MGP_C3HHeJ_T0048396.1 MGP_C3HHeJ_G0023807.1 mouse_genomes_project 17 87308758 87327182 + MGP_C3HHeJ_P0048396 Abcg8 protein_coding protein_coding MGP_C3HHeJ_T0048397.1 MGP_C3HHeJ_G0023807.1 mouse_genomes_project 17 87308869 87325640 + MGP_C3HHeJ_P0048397 Abcg8 protein_coding protein_coding MGP_C3HHeJ_T0006872.1 MGP_C3HHeJ_G0005654.1 mouse_genomes_project 17 47474853 47863622 + lincRNA lincRNA MGP_C3HHeJ_T0048037.1 MGP_C3HHeJ_G0023678.1 mouse_genomes_project 17 58662432 58676210 - MGP_C3HHeJ_P0048037 protein_coding protein_coding MGP_C3HHeJ_T0046008.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097451 25105725 + Rgs11 protein_coding processed_transcript MGP_C3HHeJ_T0046009.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097458 25105729 + MGP_C3HHeJ_P0046009 Rgs11 protein_coding protein_coding MGP_C3HHeJ_T0046010.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097462 25105734 + MGP_C3HHeJ_P0046010 Rgs11 protein_coding protein_coding MGP_C3HHeJ_T0046011.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097463 25098333 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046012.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097465 25098136 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046013.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097476 25105727 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046014.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097480 25098475 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046015.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097502 25101304 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046016.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25097512 25098597 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046017.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25101951 25105727 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0046018.1 MGP_C3HHeJ_G0023119.1 mouse_genomes_project 17 25102339 25105725 + Rgs11 protein_coding retained_intron MGP_C3HHeJ_T0099084.1 MGP_C3HHeJ_G0037278.1 mouse_genomes_project 17 37450257 37450420 - Gm25104 snRNA snRNA MGP_C3HHeJ_T0047009.1 MGP_C3HHeJ_G0023344.1 mouse_genomes_project 17 34956615 34960399 + MGP_C3HHeJ_P0047009 Ly6g5c protein_coding protein_coding MGP_C3HHeJ_T0003688.1 MGP_C3HHeJ_G0003319.1 mouse_genomes_project 17 35832909 35840358 - Ppp1r18os antisense antisense MGP_C3HHeJ_T0045974.1 MGP_C3HHeJ_G0023109.1 mouse_genomes_project 17 24821280 24833848 + MGP_C3HHeJ_P0045974 D630044L22Rik protein_coding protein_coding MGP_C3HHeJ_T0045528.1 MGP_C3HHeJ_G0022999.1 mouse_genomes_project 17 22554472 22556856 - MGP_C3HHeJ_P0045528 Prss33 protein_coding protein_coding MGP_C3HHeJ_T0045529.1 MGP_C3HHeJ_G0022999.1 mouse_genomes_project 17 22554852 22556852 - MGP_C3HHeJ_P0045529 Prss33 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045530.1 MGP_C3HHeJ_G0022999.1 mouse_genomes_project 17 22555780 22557169 - Prss33 protein_coding retained_intron MGP_C3HHeJ_T0045108.1 MGP_C3HHeJ_G0022837.1 mouse_genomes_project 17 2570708 2601467 - MGP_C3HHeJ_P0045108 Tmem242 protein_coding protein_coding MGP_C3HHeJ_T0045110.1 MGP_C3HHeJ_G0022837.1 mouse_genomes_project 17 2593518 2601483 - MGP_C3HHeJ_P0045110 Tmem242 protein_coding protein_coding MGP_C3HHeJ_T0045111.1 MGP_C3HHeJ_G0022837.1 mouse_genomes_project 17 2594248 2601480 - MGP_C3HHeJ_P0045111 Tmem242 protein_coding protein_coding MGP_C3HHeJ_T0048355.1 MGP_C3HHeJ_G0023788.1 mouse_genomes_project 17 83030544 83072025 - MGP_C3HHeJ_P0048355 Cdkl4 protein_coding protein_coding MGP_C3HHeJ_T0047550.1 MGP_C3HHeJ_G0023525.1 mouse_genomes_project 17 46675719 46676700 - MGP_C3HHeJ_P0047550 1600014C23Rik protein_coding protein_coding MGP_C3HHeJ_T0099105.1 MGP_C3HHeJ_G0037299.1 mouse_genomes_project 17 89447331 89447441 - Gm22235 snRNA snRNA MGP_C3HHeJ_T0010091.1 MGP_C3HHeJ_G0008224.1 mouse_genomes_project 17 22995440 22995518 - Mir5134 miRNA miRNA MGP_C3HHeJ_T0048022.1 MGP_C3HHeJ_G0023673.1 mouse_genomes_project 17 58599880 58608759 - MGP_C3HHeJ_P0048022 Slc25a41 protein_coding protein_coding MGP_C3HHeJ_T0048023.1 MGP_C3HHeJ_G0023673.1 mouse_genomes_project 17 58600032 58608752 - MGP_C3HHeJ_P0048023 Slc25a41 protein_coding protein_coding MGP_C3HHeJ_T0046316.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28487290 28502824 - MGP_C3HHeJ_P0046316 Mtch1 protein_coding protein_coding MGP_C3HHeJ_T0046317.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28487294 28502824 - MGP_C3HHeJ_P0046317 Mtch1 protein_coding protein_coding MGP_C3HHeJ_T0046318.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28487332 28489224 - Mtch1 protein_coding processed_transcript MGP_C3HHeJ_T0046319.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28488937 28489326 - Mtch1 protein_coding processed_transcript MGP_C3HHeJ_T0046320.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28490412 28495303 - Mtch1 protein_coding retained_intron MGP_C3HHeJ_T0046321.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28494681 28502091 - MGP_C3HHeJ_P0046321 Mtch1 protein_coding protein_coding MGP_C3HHeJ_T0046322.1 MGP_C3HHeJ_G0023187.1 mouse_genomes_project 17 28495638 28497771 - Mtch1 protein_coding retained_intron MGP_C3HHeJ_T0047308.1 MGP_C3HHeJ_G0023415.1 mouse_genomes_project 17 37076527 37079875 - MGP_C3HHeJ_P0047308 Ppp1r11 protein_coding protein_coding MGP_C3HHeJ_T0047309.1 MGP_C3HHeJ_G0023415.1 mouse_genomes_project 17 37077456 37079903 - MGP_C3HHeJ_P0047309 Ppp1r11 protein_coding protein_coding MGP_C3HHeJ_T0047310.1 MGP_C3HHeJ_G0023415.1 mouse_genomes_project 17 37077521 37079515 - MGP_C3HHeJ_P0047310 Ppp1r11 protein_coding protein_coding MGP_C3HHeJ_T0006821.1 MGP_C3HHeJ_G0005613.1 mouse_genomes_project 17 19935899 19943565 - 9330136K24Rik lincRNA lincRNA MGP_C3HHeJ_T0047366.1 MGP_C3HHeJ_G0023436.1 mouse_genomes_project 17 37543003 37543945 - MGP_C3HHeJ_P0047366 Olfr103 protein_coding protein_coding MGP_C3HHeJ_T0047367.1 MGP_C3HHeJ_G0023436.1 mouse_genomes_project 17 37543003 37546879 - MGP_C3HHeJ_P0047367 Olfr103 protein_coding protein_coding MGP_C3HHeJ_T0003717.1 MGP_C3HHeJ_G0003341.1 mouse_genomes_project 17 88307557 88309183 - Gm28528 antisense antisense MGP_C3HHeJ_T0045393.1 MGP_C3HHeJ_G0022936.1 mouse_genomes_project 17 18790583 18936988 - MGP_C3HHeJ_P0045393 protein_coding protein_coding MGP_C3HHeJ_T0003701.1 MGP_C3HHeJ_G0003329.1 mouse_genomes_project 17 48785257 48788727 + Tomm6os antisense antisense MGP_C3HHeJ_T0047606.1 MGP_C3HHeJ_G0023536.1 mouse_genomes_project 17 47233760 47260108 - MGP_C3HHeJ_P0047606 Tjap1 protein_coding protein_coding MGP_C3HHeJ_T0047607.1 MGP_C3HHeJ_G0023536.1 mouse_genomes_project 17 47233760 47260108 - MGP_C3HHeJ_P0047607 Tjap1 protein_coding protein_coding MGP_C3HHeJ_T0047608.1 MGP_C3HHeJ_G0023536.1 mouse_genomes_project 17 47233760 47260108 - MGP_C3HHeJ_P0047608 Tjap1 protein_coding protein_coding MGP_C3HHeJ_T0047609.1 MGP_C3HHeJ_G0023536.1 mouse_genomes_project 17 47236633 47241153 - MGP_C3HHeJ_P0047609 Tjap1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006809.1 MGP_C3HHeJ_G0005602.1 mouse_genomes_project 17 5825207 5837000 - Gm16702 lincRNA lincRNA MGP_C3HHeJ_T0047790.1 MGP_C3HHeJ_G0023586.1 mouse_genomes_project 17 49212416 49213685 + MGP_C3HHeJ_P0047790 1700067P10Rik protein_coding protein_coding MGP_C3HHeJ_T0047900.1 MGP_C3HHeJ_G0023622.1 mouse_genomes_project 17 57196122 57302929 + MGP_C3HHeJ_P0047900 Adgre4 protein_coding protein_coding MGP_C3HHeJ_T0047443.1 MGP_C3HHeJ_G0023495.1 mouse_genomes_project 17 43471753 43507491 - MGP_C3HHeJ_P0047443 Adgrf2 protein_coding protein_coding MGP_C3HHeJ_T0010116.1 MGP_C3HHeJ_G0008249.1 mouse_genomes_project 17 34670236 34670299 - Mir6971 miRNA miRNA MGP_C3HHeJ_T0017366.1 MGP_C3HHeJ_G0015117.1 mouse_genomes_project 17 73703743 73746156 - Trmt61b processed_transcript processed_transcript MGP_C3HHeJ_T0017367.1 MGP_C3HHeJ_G0015117.1 mouse_genomes_project 17 73703778 73746147 - Trmt61b processed_transcript processed_transcript MGP_C3HHeJ_T0017368.1 MGP_C3HHeJ_G0015117.1 mouse_genomes_project 17 73735049 73745654 - Trmt61b processed_transcript processed_transcript MGP_C3HHeJ_T0010108.1 MGP_C3HHeJ_G0008241.1 mouse_genomes_project 17 27653108 27653169 - Mir6969 miRNA miRNA MGP_C3HHeJ_T0045956.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24792480 24805357 - MGP_C3HHeJ_P0045956 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045957.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24792481 24810078 - Pigq protein_coding retained_intron MGP_C3HHeJ_T0045958.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24792481 24810243 - MGP_C3HHeJ_P0045958 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045959.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24792481 24810130 - MGP_C3HHeJ_P0045959 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045960.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24793549 24802996 - MGP_C3HHeJ_P0045960 Pigq protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045961.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24793656 24798314 - Pigq protein_coding retained_intron MGP_C3HHeJ_T0045962.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24793698 24804256 - MGP_C3HHeJ_P0045962 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045963.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24796969 24798054 - Pigq protein_coding retained_intron MGP_C3HHeJ_T0045964.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24802190 24810130 - Pigq protein_coding retained_intron MGP_C3HHeJ_T0045965.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24803273 24810128 - MGP_C3HHeJ_P0045965 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045966.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24804669 24810124 - Pigq protein_coding retained_intron MGP_C3HHeJ_T0045967.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24805275 24811049 - MGP_C3HHeJ_P0045967 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045968.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24805329 24812697 - MGP_C3HHeJ_P0045968 Pigq protein_coding protein_coding MGP_C3HHeJ_T0045969.1 MGP_C3HHeJ_G0023106.1 mouse_genomes_project 17 24805458 24811019 - MGP_C3HHeJ_P0045969 Pigq protein_coding protein_coding MGP_C3HHeJ_T0048024.1 MGP_C3HHeJ_G0023674.1 mouse_genomes_project 17 58611896 58628913 - MGP_C3HHeJ_P0048024 Slc25a23 protein_coding protein_coding MGP_C3HHeJ_T0048025.1 MGP_C3HHeJ_G0023674.1 mouse_genomes_project 17 58613384 58620966 - MGP_C3HHeJ_P0048025 Slc25a23 protein_coding protein_coding MGP_C3HHeJ_T0048026.1 MGP_C3HHeJ_G0023674.1 mouse_genomes_project 17 58613670 58621971 - MGP_C3HHeJ_P0048026 Slc25a23 protein_coding protein_coding MGP_C3HHeJ_T0048027.1 MGP_C3HHeJ_G0023674.1 mouse_genomes_project 17 58615232 58621724 - MGP_C3HHeJ_P0048027 Slc25a23 protein_coding protein_coding MGP_C3HHeJ_T0048028.1 MGP_C3HHeJ_G0023674.1 mouse_genomes_project 17 58615376 58623527 - MGP_C3HHeJ_P0048028 Slc25a23 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048029.1 MGP_C3HHeJ_G0023674.1 mouse_genomes_project 17 58624371 58628869 - Slc25a23 protein_coding retained_intron MGP_C3HHeJ_T0047892.1 MGP_C3HHeJ_G0023617.1 mouse_genomes_project 17 55348998 55377997 - MGP_C3HHeJ_P0047892 Sult1c1 protein_coding protein_coding MGP_C3HHeJ_T0048055.1 MGP_C3HHeJ_G0023687.1 mouse_genomes_project 17 59090213 59127530 - MGP_C3HHeJ_P0048055 Vmn2r120 protein_coding protein_coding MGP_C3HHeJ_T0013142.1 MGP_C3HHeJ_G0011246.1 mouse_genomes_project 17 69873879 69874817 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013082.1 MGP_C3HHeJ_G0011186.1 mouse_genomes_project 17 26512947 26513216 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013083.1 MGP_C3HHeJ_G0011187.1 mouse_genomes_project 17 26522845 26523191 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006839.1 MGP_C3HHeJ_G0005628.1 mouse_genomes_project 17 28149088 28150194 + Gm16195 lincRNA lincRNA MGP_C3HHeJ_T0045760.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23839973 23920672 + MGP_C3HHeJ_P0045760 Ift140 protein_coding protein_coding MGP_C3HHeJ_T0045761.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23840273 23927410 + MGP_C3HHeJ_P0045761 Ift140 protein_coding protein_coding MGP_C3HHeJ_T0045762.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23840281 23842812 + Ift140 protein_coding processed_transcript MGP_C3HHeJ_T0045763.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23850368 23924646 + Ift140 protein_coding retained_intron MGP_C3HHeJ_T0045764.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23850604 23861635 + MGP_C3HHeJ_P0045764 Ift140 protein_coding protein_coding MGP_C3HHeJ_T0045765.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23868846 23915141 + Ift140 protein_coding processed_transcript MGP_C3HHeJ_T0045766.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23868895 23927418 + Ift140 protein_coding processed_transcript MGP_C3HHeJ_T0045769.1 MGP_C3HHeJ_G0023060.1 mouse_genomes_project 17 23918599 23921015 + Ift140 protein_coding retained_intron MGP_C3HHeJ_T0000950.1 MGP_C3HHeJ_G0000888.1 mouse_genomes_project 17 29703088 29704552 + TEC TEC MGP_C3HHeJ_T0000951.1 MGP_C3HHeJ_G0000888.1 mouse_genomes_project 17 29703938 29704391 + TEC TEC MGP_C3HHeJ_T0013085.1 MGP_C3HHeJ_G0011189.1 mouse_genomes_project 17 26796070 26796886 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045098.1 MGP_C3HHeJ_G0022831.1 mouse_genomes_project 17 606617 650001 - MGP_C3HHeJ_P0045098 Tfb1m protein_coding protein_coding MGP_C3HHeJ_T0000957.1 MGP_C3HHeJ_G0000894.1 mouse_genomes_project 17 53124000 53125986 - TEC TEC MGP_C3HHeJ_T0047661.1 MGP_C3HHeJ_G0023551.1 mouse_genomes_project 17 47698288 47704678 - MGP_C3HHeJ_P0047661 Klhdc3 protein_coding protein_coding MGP_C3HHeJ_T0047662.1 MGP_C3HHeJ_G0023551.1 mouse_genomes_project 17 47698291 47704678 - MGP_C3HHeJ_P0047662 Klhdc3 protein_coding protein_coding MGP_C3HHeJ_T0047707.1 MGP_C3HHeJ_G0023571.1 mouse_genomes_project 17 48567200 48583298 - MGP_C3HHeJ_P0047707 Taf8 protein_coding protein_coding MGP_C3HHeJ_T0047357.1 MGP_C3HHeJ_G0023427.1 mouse_genomes_project 17 37373740 37375944 + MGP_C3HHeJ_P0047357 Ubd protein_coding protein_coding MGP_C3HHeJ_T0006831.1 MGP_C3HHeJ_G0005621.1 mouse_genomes_project 17 25787750 25830638 + Gm20468 lincRNA lincRNA MGP_C3HHeJ_T0045733.1 MGP_C3HHeJ_G0023057.1 mouse_genomes_project 17 23712455 23713488 + MGP_C3HHeJ_P0045733 Nme3 protein_coding protein_coding MGP_C3HHeJ_T0045734.1 MGP_C3HHeJ_G0023057.1 mouse_genomes_project 17 23712460 23713301 + Nme3 protein_coding processed_transcript MGP_C3HHeJ_T0045735.1 MGP_C3HHeJ_G0023057.1 mouse_genomes_project 17 23712476 23713210 + Nme3 protein_coding retained_intron MGP_C3HHeJ_T0045736.1 MGP_C3HHeJ_G0023057.1 mouse_genomes_project 17 23712478 23713450 + Nme3 protein_coding retained_intron MGP_C3HHeJ_T0045737.1 MGP_C3HHeJ_G0023057.1 mouse_genomes_project 17 23712716 23713313 + Nme3 protein_coding retained_intron MGP_C3HHeJ_T0046268.1 MGP_C3HHeJ_G0023177.1 mouse_genomes_project 17 28054889 28062675 - MGP_C3HHeJ_P0046268 Pxt1 protein_coding protein_coding MGP_C3HHeJ_T0047342.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37182894 37213780 + MGP_C3HHeJ_P0047342 Gabbr1 protein_coding protein_coding MGP_C3HHeJ_T0047343.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37182948 37213003 + MGP_C3HHeJ_P0047343 Gabbr1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047344.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37182956 37186399 + MGP_C3HHeJ_P0047344 Gabbr1 protein_coding protein_coding MGP_C3HHeJ_T0047345.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37183127 37183769 + Gabbr1 protein_coding retained_intron MGP_C3HHeJ_T0047346.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37183496 37186399 + MGP_C3HHeJ_P0047346 Gabbr1 protein_coding protein_coding MGP_C3HHeJ_T0047347.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37185509 37188059 + Gabbr1 protein_coding processed_transcript MGP_C3HHeJ_T0047348.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37187562 37213017 + MGP_C3HHeJ_P0047348 Gabbr1 protein_coding protein_coding MGP_C3HHeJ_T0047349.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37187605 37193282 + MGP_C3HHeJ_P0047349 Gabbr1 protein_coding protein_coding MGP_C3HHeJ_T0047350.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37192636 37193789 + Gabbr1 protein_coding retained_intron MGP_C3HHeJ_T0047351.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37199917 37201790 + Gabbr1 protein_coding retained_intron MGP_C3HHeJ_T0047352.1 MGP_C3HHeJ_G0023422.1 mouse_genomes_project 17 37209168 37210937 + Gabbr1 protein_coding retained_intron MGP_C3HHeJ_T0045402.1 MGP_C3HHeJ_G0022945.1 mouse_genomes_project 17 19254321 19255480 - MGP_C3HHeJ_P0045402 Vmn1r232 protein_coding protein_coding MGP_C3HHeJ_T0045970.1 MGP_C3HHeJ_G0023107.1 mouse_genomes_project 17 24810427 24814106 - MGP_C3HHeJ_P0045970 Nhlrc4 protein_coding protein_coding MGP_C3HHeJ_T0045971.1 MGP_C3HHeJ_G0023107.1 mouse_genomes_project 17 24812340 24814135 - Nhlrc4 protein_coding processed_transcript MGP_C3HHeJ_T0045972.1 MGP_C3HHeJ_G0023107.1 mouse_genomes_project 17 24812428 24814005 - Nhlrc4 protein_coding processed_transcript MGP_C3HHeJ_T0047855.1 MGP_C3HHeJ_G0023605.1 mouse_genomes_project 17 51240989 51444036 - MGP_C3HHeJ_P0047855 Rftn1 protein_coding protein_coding MGP_C3HHeJ_T0047856.1 MGP_C3HHeJ_G0023605.1 mouse_genomes_project 17 51285649 51444218 - Rftn1 protein_coding retained_intron MGP_C3HHeJ_T0046890.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34678817 34685687 + MGP_C3HHeJ_P0046890 Nelfe protein_coding protein_coding MGP_C3HHeJ_T0046891.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34678824 34685572 + MGP_C3HHeJ_P0046891 Nelfe protein_coding protein_coding MGP_C3HHeJ_T0046892.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34678834 34683407 + MGP_C3HHeJ_P0046892 Nelfe protein_coding protein_coding MGP_C3HHeJ_T0046893.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34678834 34685690 + MGP_C3HHeJ_P0046893 Nelfe protein_coding protein_coding MGP_C3HHeJ_T0046894.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34681034 34683163 + Nelfe protein_coding retained_intron MGP_C3HHeJ_T0046895.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34683229 34683844 + Nelfe protein_coding retained_intron MGP_C3HHeJ_T0046896.1 MGP_C3HHeJ_G0023319.1 mouse_genomes_project 17 34683573 34684072 + Nelfe protein_coding retained_intron MGP_C3HHeJ_T0048388.1 MGP_C3HHeJ_G0023802.1 mouse_genomes_project 17 86789895 86794130 - MGP_C3HHeJ_P0048388 Zfp36l2 protein_coding protein_coding MGP_C3HHeJ_T0047898.1 MGP_C3HHeJ_G0023620.1 mouse_genomes_project 17 57053093 57079226 - MGP_C3HHeJ_P0047898 Vmn2r118 protein_coding protein_coding MGP_C3HHeJ_T0048302.1 MGP_C3HHeJ_G0023764.1 mouse_genomes_project 17 81276866 81289731 + MGP_C3HHeJ_P0048302 Gpatch11 protein_coding protein_coding MGP_C3HHeJ_T0045531.1 MGP_C3HHeJ_G0023000.1 mouse_genomes_project 17 22557897 22565249 - MGP_C3HHeJ_P0045531 Prss41 protein_coding protein_coding MGP_C3HHeJ_T0045532.1 MGP_C3HHeJ_G0023000.1 mouse_genomes_project 17 22557897 22565232 - MGP_C3HHeJ_P0045532 Prss41 protein_coding protein_coding MGP_C3HHeJ_T0045533.1 MGP_C3HHeJ_G0023000.1 mouse_genomes_project 17 22562197 22565249 - MGP_C3HHeJ_P0045533 Prss41 protein_coding protein_coding MGP_C3HHeJ_T0045534.1 MGP_C3HHeJ_G0023000.1 mouse_genomes_project 17 22563326 22565226 - Prss41 protein_coding retained_intron MGP_C3HHeJ_T0045397.1 MGP_C3HHeJ_G0022940.1 mouse_genomes_project 17 19034023 19034920 + MGP_C3HHeJ_P0045397 Vmn1r226 protein_coding protein_coding MGP_C3HHeJ_T0047732.1 MGP_C3HHeJ_G0023575.1 mouse_genomes_project 17 48704532 48746545 + Gm20517 protein_coding retained_intron MGP_C3HHeJ_T0047733.1 MGP_C3HHeJ_G0023575.1 mouse_genomes_project 17 48704541 48747869 + Gm20517 protein_coding retained_intron MGP_C3HHeJ_T0047735.1 MGP_C3HHeJ_G0023575.1 mouse_genomes_project 17 48704556 48781477 + MGP_C3HHeJ_P0047735 Gm20517 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006881.1 MGP_C3HHeJ_G0005658.1 mouse_genomes_project 17 53486518 53500952 + Gm19585 lincRNA lincRNA MGP_C3HHeJ_T0006882.1 MGP_C3HHeJ_G0005658.1 mouse_genomes_project 17 53498079 53500747 + Gm19585 lincRNA lincRNA MGP_C3HHeJ_T0099096.1 MGP_C3HHeJ_G0037290.1 mouse_genomes_project 17 68031502 68031609 + Gm23264 snRNA snRNA MGP_C3HHeJ_T0046389.1 MGP_C3HHeJ_G0023209.1 mouse_genomes_project 17 30569061 30609621 + MGP_C3HHeJ_P0046389 Ubash3a protein_coding protein_coding MGP_C3HHeJ_T0046390.1 MGP_C3HHeJ_G0023209.1 mouse_genomes_project 17 30569268 30578876 + MGP_C3HHeJ_P0046390 Ubash3a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046391.1 MGP_C3HHeJ_G0023209.1 mouse_genomes_project 17 30569277 30575636 + MGP_C3HHeJ_P0046391 Ubash3a protein_coding protein_coding MGP_C3HHeJ_T0046392.1 MGP_C3HHeJ_G0023209.1 mouse_genomes_project 17 30573076 30609621 + Ubash3a protein_coding processed_transcript MGP_C3HHeJ_T0046393.1 MGP_C3HHeJ_G0023209.1 mouse_genomes_project 17 30573260 30580627 + Ubash3a protein_coding processed_transcript MGP_C3HHeJ_T0047802.1 MGP_C3HHeJ_G0023592.1 mouse_genomes_project 17 49455442 49474864 + MGP_C3HHeJ_P0047802 Treml2 protein_coding protein_coding MGP_C3HHeJ_T0047370.1 MGP_C3HHeJ_G0023439.1 mouse_genomes_project 17 37673687 37674632 + MGP_C3HHeJ_P0047370 Olfr109 protein_coding protein_coding MGP_C3HHeJ_T0045391.1 MGP_C3HHeJ_G0022934.1 mouse_genomes_project 17 18742043 18742940 + MGP_C3HHeJ_P0045391 Vmn1r224 protein_coding protein_coding MGP_C3HHeJ_T0048056.1 MGP_C3HHeJ_G0023688.1 mouse_genomes_project 17 59319311 59319764 - MGP_C3HHeJ_P0048056 Gm21834 protein_coding protein_coding MGP_C3HHeJ_T0045545.1 MGP_C3HHeJ_G0023007.1 mouse_genomes_project 17 22689985 22692052 - MGP_C3HHeJ_P0045545 protein_coding protein_coding MGP_C3HHeJ_T0006900.1 MGP_C3HHeJ_G0005671.1 mouse_genomes_project 17 85607770 85609495 + Gm29052 lincRNA lincRNA MGP_C3HHeJ_T0013162.1 MGP_C3HHeJ_G0011266.1 mouse_genomes_project 17 95518844 95524288 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048295.1 MGP_C3HHeJ_G0023759.1 mouse_genomes_project 17 80615717 80798468 + MGP_C3HHeJ_P0048295 Crim1 protein_coding protein_coding MGP_C3HHeJ_T0046545.1 MGP_C3HHeJ_G0023250.1 mouse_genomes_project 17 32698111 32699042 + MGP_C3HHeJ_P0046545 Olfr239 protein_coding protein_coding MGP_C3HHeJ_T0047827.1 MGP_C3HHeJ_G0023599.1 mouse_genomes_project 17 49620816 49624401 - Tspo2 protein_coding retained_intron MGP_C3HHeJ_T0047828.1 MGP_C3HHeJ_G0023599.1 mouse_genomes_project 17 49621297 49624431 - MGP_C3HHeJ_P0047828 Tspo2 protein_coding protein_coding MGP_C3HHeJ_T0047829.1 MGP_C3HHeJ_G0023599.1 mouse_genomes_project 17 49621381 49622983 - MGP_C3HHeJ_P0047829 Tspo2 protein_coding protein_coding MGP_C3HHeJ_T0047830.1 MGP_C3HHeJ_G0023599.1 mouse_genomes_project 17 49621430 49622980 - MGP_C3HHeJ_P0047830 Tspo2 protein_coding protein_coding MGP_C3HHeJ_T0047831.1 MGP_C3HHeJ_G0023599.1 mouse_genomes_project 17 49622845 49624426 - Tspo2 protein_coding processed_transcript MGP_C3HHeJ_T0013144.1 MGP_C3HHeJ_G0011248.1 mouse_genomes_project 17 72459716 72460160 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003674.1 MGP_C3HHeJ_G0003309.1 mouse_genomes_project 17 33441823 33442851 - BC051226 antisense antisense MGP_C3HHeJ_T0003675.1 MGP_C3HHeJ_G0003309.1 mouse_genomes_project 17 33441826 33442820 - BC051226 antisense antisense MGP_C3HHeJ_T0003676.1 MGP_C3HHeJ_G0003309.1 mouse_genomes_project 17 33441935 33442959 - BC051226 antisense antisense MGP_C3HHeJ_T0045908.1 MGP_C3HHeJ_G0023099.1 mouse_genomes_project 17 24696539 24699369 - MGP_C3HHeJ_P0045908 Rhbdl1 protein_coding protein_coding MGP_C3HHeJ_T0045909.1 MGP_C3HHeJ_G0023099.1 mouse_genomes_project 17 24696676 24699156 - MGP_C3HHeJ_P0045909 Rhbdl1 protein_coding protein_coding MGP_C3HHeJ_T0045910.1 MGP_C3HHeJ_G0023099.1 mouse_genomes_project 17 24697846 24699325 - MGP_C3HHeJ_P0045910 Rhbdl1 protein_coding protein_coding MGP_C3HHeJ_T0048010.1 MGP_C3HHeJ_G0023665.1 mouse_genomes_project 17 58432533 58448012 + MGP_C3HHeJ_P0048010 1700061G19Rik protein_coding protein_coding MGP_C3HHeJ_T0048011.1 MGP_C3HHeJ_G0023665.1 mouse_genomes_project 17 58432559 58437005 + 1700061G19Rik protein_coding retained_intron MGP_C3HHeJ_T0046394.1 MGP_C3HHeJ_G0023210.1 mouse_genomes_project 17 30623925 30647520 - MGP_C3HHeJ_P0046394 Rsph1 protein_coding protein_coding MGP_C3HHeJ_T0045193.1 MGP_C3HHeJ_G0022864.1 mouse_genomes_project 17 5761355 5778319 + MGP_C3HHeJ_P0045193 protein_coding protein_coding MGP_C3HHeJ_T0047423.1 MGP_C3HHeJ_G0023483.1 mouse_genomes_project 17 41267791 41286565 + MGP_C3HHeJ_P0047423 Gm44501 protein_coding protein_coding MGP_C3HHeJ_T0045496.1 MGP_C3HHeJ_G0022987.1 mouse_genomes_project 17 22377067 22378699 + MGP_C3HHeJ_P0045496 Hcfc1r1 protein_coding protein_coding MGP_C3HHeJ_T0045497.1 MGP_C3HHeJ_G0022987.1 mouse_genomes_project 17 22377079 22378699 + MGP_C3HHeJ_P0045497 Hcfc1r1 protein_coding protein_coding MGP_C3HHeJ_T0045498.1 MGP_C3HHeJ_G0022987.1 mouse_genomes_project 17 22377098 22378646 + MGP_C3HHeJ_P0045498 Hcfc1r1 protein_coding protein_coding MGP_C3HHeJ_T0047453.1 MGP_C3HHeJ_G0023501.1 mouse_genomes_project 17 44358910 44369052 - MGP_C3HHeJ_P0047453 Ankrd66 protein_coding protein_coding MGP_C3HHeJ_T0045239.1 MGP_C3HHeJ_G0022879.1 mouse_genomes_project 17 10214084 10243808 - MGP_C3HHeJ_P0045239 Slc22a1 protein_coding protein_coding MGP_C3HHeJ_T0010098.1 MGP_C3HHeJ_G0008231.1 mouse_genomes_project 17 25495109 25495235 - Gm22420 miRNA miRNA MGP_C3HHeJ_T0101154.1 MGP_C3HHeJ_G0039312.1 mouse_genomes_project 17 55107158 55108877 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0046157.1 MGP_C3HHeJ_G0023156.1 mouse_genomes_project 17 27095938 27115677 - MGP_C3HHeJ_P0046157 Tcp11 protein_coding protein_coding MGP_C3HHeJ_T0046158.1 MGP_C3HHeJ_G0023156.1 mouse_genomes_project 17 27095939 27115732 - MGP_C3HHeJ_P0046158 Tcp11 protein_coding protein_coding MGP_C3HHeJ_T0046159.1 MGP_C3HHeJ_G0023156.1 mouse_genomes_project 17 27095942 27115660 - MGP_C3HHeJ_P0046159 Tcp11 protein_coding protein_coding MGP_C3HHeJ_T0046160.1 MGP_C3HHeJ_G0023156.1 mouse_genomes_project 17 27095988 27097668 - Tcp11 protein_coding processed_transcript MGP_C3HHeJ_T0046161.1 MGP_C3HHeJ_G0023156.1 mouse_genomes_project 17 27098822 27115732 - MGP_C3HHeJ_P0046161 Tcp11 protein_coding protein_coding MGP_C3HHeJ_T0046162.1 MGP_C3HHeJ_G0023156.1 mouse_genomes_project 17 27103844 27115694 - MGP_C3HHeJ_P0046162 Tcp11 protein_coding protein_coding MGP_C3HHeJ_T0010146.1 MGP_C3HHeJ_G0008279.1 mouse_genomes_project 17 94818464 94818599 + Gm44345 miRNA miRNA MGP_C3HHeJ_T0010109.1 MGP_C3HHeJ_G0008242.1 mouse_genomes_project 17 28770684 28770747 + Mir7667 miRNA miRNA MGP_C3HHeJ_T0047838.1 MGP_C3HHeJ_G0023601.1 mouse_genomes_project 17 50135634 50306240 + MGP_C3HHeJ_P0047838 Lrfn2 protein_coding protein_coding MGP_C3HHeJ_T0046628.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33443055 33445066 + MGP_C3HHeJ_P0046628 Daxx protein_coding protein_coding MGP_C3HHeJ_T0046629.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33443086 33449125 + MGP_C3HHeJ_P0046629 Daxx protein_coding protein_coding MGP_C3HHeJ_T0046630.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33443139 33445155 + MGP_C3HHeJ_P0046630 Daxx protein_coding protein_coding MGP_C3HHeJ_T0046631.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33443156 33449051 + MGP_C3HHeJ_P0046631 Daxx protein_coding protein_coding MGP_C3HHeJ_T0046632.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33443242 33449118 + MGP_C3HHeJ_P0046632 Daxx protein_coding protein_coding MGP_C3HHeJ_T0046633.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33443918 33445540 + Daxx protein_coding retained_intron MGP_C3HHeJ_T0046634.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33444067 33449118 + MGP_C3HHeJ_P0046634 Daxx protein_coding protein_coding MGP_C3HHeJ_T0046635.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33446389 33447529 + Daxx protein_coding processed_transcript MGP_C3HHeJ_T0046636.1 MGP_C3HHeJ_G0023267.1 mouse_genomes_project 17 33447088 33449051 + Daxx protein_coding processed_transcript MGP_C3HHeJ_T0047278.1 MGP_C3HHeJ_G0023402.1 mouse_genomes_project 17 36434213 36441990 - MGP_C3HHeJ_P0047278 H2-M10.3 protein_coding protein_coding MGP_C3HHeJ_T0046184.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27372269 27386466 + MGP_C3HHeJ_P0046184 Fance protein_coding protein_coding MGP_C3HHeJ_T0046185.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27372286 27386466 + Fance protein_coding retained_intron MGP_C3HHeJ_T0046186.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27372305 27386465 + MGP_C3HHeJ_P0046186 Fance protein_coding protein_coding MGP_C3HHeJ_T0046187.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27372311 27386467 + MGP_C3HHeJ_P0046187 Fance protein_coding protein_coding MGP_C3HHeJ_T0046188.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27372383 27386152 + MGP_C3HHeJ_P0046188 Fance protein_coding protein_coding MGP_C3HHeJ_T0046189.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27376034 27380736 + MGP_C3HHeJ_P0046189 Fance protein_coding protein_coding MGP_C3HHeJ_T0046190.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27376071 27377057 + Fance protein_coding retained_intron MGP_C3HHeJ_T0046191.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27376967 27378187 + Fance protein_coding retained_intron MGP_C3HHeJ_T0046192.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27377423 27378845 + Fance protein_coding processed_transcript MGP_C3HHeJ_T0046193.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27377478 27386183 + MGP_C3HHeJ_P0046193 Fance protein_coding protein_coding MGP_C3HHeJ_T0046194.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27377777 27380720 + Fance protein_coding retained_intron MGP_C3HHeJ_T0046195.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27378034 27386348 + MGP_C3HHeJ_P0046195 Fance protein_coding protein_coding MGP_C3HHeJ_T0046196.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27378263 27386398 + MGP_C3HHeJ_P0046196 Fance protein_coding protein_coding MGP_C3HHeJ_T0046197.1 MGP_C3HHeJ_G0023161.1 mouse_genomes_project 17 27378372 27386466 + Fance protein_coding processed_transcript MGP_C3HHeJ_T0048135.1 MGP_C3HHeJ_G0023713.1 mouse_genomes_project 17 68637247 69353276 - MGP_C3HHeJ_P0048135 Ptprm protein_coding protein_coding MGP_C3HHeJ_T0048136.1 MGP_C3HHeJ_G0023713.1 mouse_genomes_project 17 68785730 69352846 - MGP_C3HHeJ_P0048136 Ptprm protein_coding unknown_likely_coding MGP_C3HHeJ_T0045872.1 MGP_C3HHeJ_G0023086.1 mouse_genomes_project 17 24586190 24589896 + MGP_C3HHeJ_P0045872 Rpusd1 protein_coding protein_coding MGP_C3HHeJ_T0045381.1 MGP_C3HHeJ_G0022924.1 mouse_genomes_project 17 17608036 17638189 + MGP_C3HHeJ_P0045381 protein_coding protein_coding MGP_C3HHeJ_T0046470.1 MGP_C3HHeJ_G0023226.1 mouse_genomes_project 17 31780007 31809313 - MGP_C3HHeJ_P0046470 Akap8l protein_coding protein_coding MGP_C3HHeJ_T0045828.1 MGP_C3HHeJ_G0023076.1 mouse_genomes_project 17 24187527 24189810 - MGP_C3HHeJ_P0045828 Tpsab1 protein_coding protein_coding MGP_C3HHeJ_T0045829.1 MGP_C3HHeJ_G0023076.1 mouse_genomes_project 17 24187528 24189845 - Tpsab1 protein_coding processed_transcript MGP_C3HHeJ_T0100360.1 MGP_C3HHeJ_G0038554.1 mouse_genomes_project 17 94777903 94778033 - Gm24244 snoRNA snoRNA MGP_C3HHeJ_T0099095.1 MGP_C3HHeJ_G0037289.1 mouse_genomes_project 17 62158049 62158212 + Gm23447 snRNA snRNA MGP_C3HHeJ_T0048463.1 MGP_C3HHeJ_G0023832.1 mouse_genomes_project 17 90798382 90798799 + MGP_C3HHeJ_P0048463 Rpl36-ps4 protein_coding protein_coding MGP_C3HHeJ_T0006811.1 MGP_C3HHeJ_G0005604.1 mouse_genomes_project 17 7852085 7856788 + 1700110C19Rik lincRNA lincRNA MGP_C3HHeJ_T0006812.1 MGP_C3HHeJ_G0005604.1 mouse_genomes_project 17 7852085 7856788 + 1700110C19Rik lincRNA lincRNA MGP_C3HHeJ_T0047909.1 MGP_C3HHeJ_G0023630.1 mouse_genomes_project 17 57459657 57469424 - MGP_C3HHeJ_P0047909 Stap2 protein_coding protein_coding MGP_C3HHeJ_T0048359.1 MGP_C3HHeJ_G0023790.1 mouse_genomes_project 17 83454279 83456618 - MGP_C3HHeJ_P0048359 protein_coding protein_coding MGP_C3HHeJ_T0003677.1 MGP_C3HHeJ_G0003310.1 mouse_genomes_project 17 33452775 33453654 - Gm19412 antisense antisense MGP_C3HHeJ_T0003678.1 MGP_C3HHeJ_G0003310.1 mouse_genomes_project 17 33453070 33453786 - Gm19412 antisense antisense MGP_C3HHeJ_T0011339.1 MGP_C3HHeJ_G0009472.1 mouse_genomes_project 17 78446351 78446459 - Gm26124 misc_RNA misc_RNA MGP_C3HHeJ_T0047222.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35895168 35896499 + Ppp1r10 protein_coding retained_intron MGP_C3HHeJ_T0047223.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35895300 35910878 + MGP_C3HHeJ_P0047223 Ppp1r10 protein_coding protein_coding MGP_C3HHeJ_T0047224.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35895313 35896075 + Ppp1r10 protein_coding processed_transcript MGP_C3HHeJ_T0047225.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35895516 35897093 + Ppp1r10 protein_coding retained_intron MGP_C3HHeJ_T0047226.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35895732 35903041 + MGP_C3HHeJ_P0047226 Ppp1r10 protein_coding protein_coding MGP_C3HHeJ_T0047227.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35895930 35910878 + MGP_C3HHeJ_P0047227 Ppp1r10 protein_coding protein_coding MGP_C3HHeJ_T0047228.1 MGP_C3HHeJ_G0023388.1 mouse_genomes_project 17 35905241 35907872 + Ppp1r10 protein_coding retained_intron MGP_C3HHeJ_T0048296.1 MGP_C3HHeJ_G0023760.1 mouse_genomes_project 17 80799773 80840999 - MGP_C3HHeJ_P0048296 Fez2 protein_coding protein_coding MGP_C3HHeJ_T0048297.1 MGP_C3HHeJ_G0023760.1 mouse_genomes_project 17 80799773 80840999 - MGP_C3HHeJ_P0048297 Fez2 protein_coding protein_coding MGP_C3HHeJ_T0046984.1 MGP_C3HHeJ_G0023337.1 mouse_genomes_project 17 34900287 34903257 + MGP_C3HHeJ_P0046984 Ddah2 protein_coding protein_coding MGP_C3HHeJ_T0046985.1 MGP_C3HHeJ_G0023337.1 mouse_genomes_project 17 34900977 34902068 + MGP_C3HHeJ_P0046985 Ddah2 protein_coding protein_coding MGP_C3HHeJ_T0046986.1 MGP_C3HHeJ_G0023337.1 mouse_genomes_project 17 34902054 34902787 + Ddah2 protein_coding retained_intron MGP_C3HHeJ_T0010144.1 MGP_C3HHeJ_G0008277.1 mouse_genomes_project 17 94060549 94060694 + miRNA miRNA MGP_C3HHeJ_T0045939.1 MGP_C3HHeJ_G0023102.1 mouse_genomes_project 17 24725744 24731893 - MGP_C3HHeJ_P0045939 Fam195a protein_coding protein_coding MGP_C3HHeJ_T0045146.1 MGP_C3HHeJ_G0022845.1 mouse_genomes_project 17 3512469 3579062 + MGP_C3HHeJ_P0045146 Tmem181a protein_coding protein_coding MGP_C3HHeJ_T0045147.1 MGP_C3HHeJ_G0022845.1 mouse_genomes_project 17 3555062 3579038 + MGP_C3HHeJ_P0045147 Tmem181a protein_coding unknown_likely_coding MGP_C3HHeJ_T0048255.1 MGP_C3HHeJ_G0023751.1 mouse_genomes_project 17 76669581 76699268 + MGP_C3HHeJ_P0048255 Slc30a6 protein_coding protein_coding MGP_C3HHeJ_T0048256.1 MGP_C3HHeJ_G0023751.1 mouse_genomes_project 17 76669581 76699268 + MGP_C3HHeJ_P0048256 Slc30a6 protein_coding protein_coding MGP_C3HHeJ_T0045827.1 MGP_C3HHeJ_G0023075.1 mouse_genomes_project 17 24162415 24166317 + MGP_C3HHeJ_P0045827 Prss29 protein_coding protein_coding MGP_C3HHeJ_T0101832.1 MGP_C3HHeJ_G0039797.1 mouse_genomes_project 17 36305489 36305595 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006883.1 MGP_C3HHeJ_G0005659.1 mouse_genomes_project 17 55761552 55778974 - 1700025K24Rik lincRNA lincRNA MGP_C3HHeJ_T0006851.1 MGP_C3HHeJ_G0005636.1 mouse_genomes_project 17 33282532 33284915 - 4931413I07Rik lincRNA lincRNA MGP_C3HHeJ_T0046721.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33677237 33686943 - MGP_C3HHeJ_P0046721 Brd2 protein_coding protein_coding MGP_C3HHeJ_T0046722.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33677237 33687589 - MGP_C3HHeJ_P0046722 Brd2 protein_coding protein_coding MGP_C3HHeJ_T0046723.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33677244 33685607 - MGP_C3HHeJ_P0046723 Brd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046724.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33677577 33683685 - MGP_C3HHeJ_P0046724 Brd2 protein_coding protein_coding MGP_C3HHeJ_T0046725.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33677898 33678947 - Brd2 protein_coding retained_intron MGP_C3HHeJ_T0046726.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33678973 33680164 - Brd2 protein_coding retained_intron MGP_C3HHeJ_T0046727.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33678975 33680190 - MGP_C3HHeJ_P0046727 Brd2 protein_coding protein_coding MGP_C3HHeJ_T0046728.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33679010 33680289 - MGP_C3HHeJ_P0046728 Brd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046729.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33679299 33687260 - MGP_C3HHeJ_P0046729 Brd2 protein_coding protein_coding MGP_C3HHeJ_T0046730.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33679976 33680683 - Brd2 protein_coding retained_intron MGP_C3HHeJ_T0046731.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33684723 33687222 - Brd2 protein_coding processed_transcript MGP_C3HHeJ_T0046732.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33684753 33687891 - Brd2 protein_coding processed_transcript MGP_C3HHeJ_T0046733.1 MGP_C3HHeJ_G0023284.1 mouse_genomes_project 17 33685062 33687906 - Brd2 protein_coding processed_transcript MGP_C3HHeJ_T0098068.1 MGP_C3HHeJ_G0036280.1 mouse_genomes_project 17 3347301 3347423 + n-R5s26 rRNA rRNA MGP_C3HHeJ_T0099099.1 MGP_C3HHeJ_G0037293.1 mouse_genomes_project 17 78409097 78409203 + Gm24126 snRNA snRNA MGP_C3HHeJ_T0045386.1 MGP_C3HHeJ_G0022929.1 mouse_genomes_project 17 18491225 18492202 - MGP_C3HHeJ_P0045386 protein_coding protein_coding MGP_C3HHeJ_T0017318.1 MGP_C3HHeJ_G0015097.1 mouse_genomes_project 17 5817541 5871417 + T2 processed_transcript processed_transcript MGP_C3HHeJ_T0017319.1 MGP_C3HHeJ_G0015097.1 mouse_genomes_project 17 5844130 5871417 + T2 processed_transcript processed_transcript MGP_C3HHeJ_T0047793.1 MGP_C3HHeJ_G0023589.1 mouse_genomes_project 17 49387463 49401055 + MGP_C3HHeJ_P0047793 Trem1 protein_coding protein_coding MGP_C3HHeJ_T0047794.1 MGP_C3HHeJ_G0023589.1 mouse_genomes_project 17 49387466 49401617 + MGP_C3HHeJ_P0047794 Trem1 protein_coding protein_coding MGP_C3HHeJ_T0013071.1 MGP_C3HHeJ_G0011175.1 mouse_genomes_project 17 12675672 12676411 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047373.1 MGP_C3HHeJ_G0023441.1 mouse_genomes_project 17 37706057 37706770 + MGP_C3HHeJ_P0047373 Olfr111 protein_coding protein_coding MGP_C3HHeJ_T0047998.1 MGP_C3HHeJ_G0023657.1 mouse_genomes_project 17 58222597 58266058 + MGP_C3HHeJ_P0047998 Ranbp3 protein_coding protein_coding MGP_C3HHeJ_T0047999.1 MGP_C3HHeJ_G0023657.1 mouse_genomes_project 17 58222762 58266062 + MGP_C3HHeJ_P0047999 Ranbp3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045392.1 MGP_C3HHeJ_G0022935.1 mouse_genomes_project 17 18790574 18810340 - MGP_C3HHeJ_P0045392 Vmn2r108 protein_coding protein_coding MGP_C3HHeJ_T0099078.1 MGP_C3HHeJ_G0037272.1 mouse_genomes_project 17 30095422 30095526 - Gm24661 snRNA snRNA MGP_C3HHeJ_T0046963.1 MGP_C3HHeJ_G0023333.1 mouse_genomes_project 17 34855543 34865711 + MGP_C3HHeJ_P0046963 Vwa7 protein_coding protein_coding MGP_C3HHeJ_T0046964.1 MGP_C3HHeJ_G0023333.1 mouse_genomes_project 17 34855602 34865485 + MGP_C3HHeJ_P0046964 Vwa7 protein_coding protein_coding MGP_C3HHeJ_T0013086.1 MGP_C3HHeJ_G0011190.1 mouse_genomes_project 17 31358092 31358512 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047175.1 MGP_C3HHeJ_G0023383.1 mouse_genomes_project 17 35839064 35850868 + MGP_C3HHeJ_P0047175 Ppp1r18 protein_coding protein_coding MGP_C3HHeJ_T0047176.1 MGP_C3HHeJ_G0023383.1 mouse_genomes_project 17 35839096 35850769 + MGP_C3HHeJ_P0047176 Ppp1r18 protein_coding protein_coding MGP_C3HHeJ_T0047177.1 MGP_C3HHeJ_G0023383.1 mouse_genomes_project 17 35839527 35850873 + MGP_C3HHeJ_P0047177 Ppp1r18 protein_coding protein_coding MGP_C3HHeJ_T0047178.1 MGP_C3HHeJ_G0023383.1 mouse_genomes_project 17 35840086 35850873 + MGP_C3HHeJ_P0047178 Ppp1r18 protein_coding protein_coding MGP_C3HHeJ_T0047179.1 MGP_C3HHeJ_G0023383.1 mouse_genomes_project 17 35840131 35850864 + MGP_C3HHeJ_P0047179 Ppp1r18 protein_coding protein_coding MGP_C3HHeJ_T0047180.1 MGP_C3HHeJ_G0023383.1 mouse_genomes_project 17 35841874 35850871 + MGP_C3HHeJ_P0047180 Ppp1r18 protein_coding protein_coding MGP_C3HHeJ_T0010122.1 MGP_C3HHeJ_G0008255.1 mouse_genomes_project 17 35106959 35107076 + Mir8094 miRNA miRNA MGP_C3HHeJ_T0003665.1 MGP_C3HHeJ_G0003304.1 mouse_genomes_project 17 28046152 28058046 + Gm16191 antisense antisense MGP_C3HHeJ_T0003666.1 MGP_C3HHeJ_G0003304.1 mouse_genomes_project 17 28055019 28055677 + Gm16191 antisense antisense MGP_C3HHeJ_T0046736.1 MGP_C3HHeJ_G0023286.1 mouse_genomes_project 17 33708123 33735695 + MGP_C3HHeJ_P0046736 protein_coding protein_coding MGP_C3HHeJ_T0048351.1 MGP_C3HHeJ_G0023785.1 mouse_genomes_project 17 82803297 82888566 + MGP_C3HHeJ_P0048351 Arhgef33 protein_coding protein_coding MGP_C3HHeJ_T0048352.1 MGP_C3HHeJ_G0023785.1 mouse_genomes_project 17 82829790 82884205 + MGP_C3HHeJ_P0048352 Arhgef33 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047930.1 MGP_C3HHeJ_G0023636.1 mouse_genomes_project 17 57569993 57582596 - MGP_C3HHeJ_P0047930 Plin4 protein_coding protein_coding MGP_C3HHeJ_T0048341.1 MGP_C3HHeJ_G0023779.1 mouse_genomes_project 17 82611652 82675215 + MGP_C3HHeJ_P0048341 Galm protein_coding protein_coding MGP_C3HHeJ_T0048342.1 MGP_C3HHeJ_G0023779.1 mouse_genomes_project 17 82630046 82672596 + MGP_C3HHeJ_P0048342 Galm protein_coding protein_coding MGP_C3HHeJ_T0098076.1 MGP_C3HHeJ_G0036288.1 mouse_genomes_project 17 80959313 80959424 - Gm22562 rRNA rRNA MGP_C3HHeJ_T0047996.1 MGP_C3HHeJ_G0023655.1 mouse_genomes_project 17 58157619 58171178 - MGP_C3HHeJ_P0047996 Lonp1 protein_coding protein_coding MGP_C3HHeJ_T0101799.1 MGP_C3HHeJ_G0039764.1 mouse_genomes_project 17 19463683 19464208 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048103.1 MGP_C3HHeJ_G0023705.1 mouse_genomes_project 17 67857448 67888652 - MGP_C3HHeJ_P0048103 Twsg1 protein_coding protein_coding MGP_C3HHeJ_T0010118.1 MGP_C3HHeJ_G0008251.1 mouse_genomes_project 17 34686886 34686950 - Mir6972 miRNA miRNA MGP_C3HHeJ_T0006856.1 MGP_C3HHeJ_G0005641.1 mouse_genomes_project 17 34352526 34355659 - Gm20461 lincRNA lincRNA MGP_C3HHeJ_T0046911.1 MGP_C3HHeJ_G0023323.1 mouse_genomes_project 17 34708943 34726350 + MGP_C3HHeJ_P0046911 Zbtb12 protein_coding protein_coding MGP_C3HHeJ_T0046914.1 MGP_C3HHeJ_G0023323.1 mouse_genomes_project 17 34725463 34727772 + MGP_C3HHeJ_P0046914 Zbtb12 protein_coding protein_coding MGP_C3HHeJ_T0101822.1 MGP_C3HHeJ_G0039787.1 mouse_genomes_project 17 35184518 35185501 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013125.1 MGP_C3HHeJ_G0011229.1 mouse_genomes_project 17 54715437 54717373 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048392.1 MGP_C3HHeJ_G0023806.1 mouse_genomes_project 17 87283991 87308649 - MGP_C3HHeJ_P0048392 Abcg5 protein_coding protein_coding MGP_C3HHeJ_T0048393.1 MGP_C3HHeJ_G0023806.1 mouse_genomes_project 17 87284245 87307840 - MGP_C3HHeJ_P0048393 Abcg5 protein_coding protein_coding MGP_C3HHeJ_T0048394.1 MGP_C3HHeJ_G0023806.1 mouse_genomes_project 17 87295140 87299589 - Abcg5 protein_coding processed_transcript MGP_C3HHeJ_T0048395.1 MGP_C3HHeJ_G0023806.1 mouse_genomes_project 17 87295618 87301669 - Abcg5 protein_coding retained_intron MGP_C3HHeJ_T0046471.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31812759 31840211 - MGP_C3HHeJ_P0046471 Wiz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046472.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31812760 31840283 - MGP_C3HHeJ_P0046472 Wiz protein_coding unknown_likely_coding MGP_C3HHeJ_T0046473.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31812761 31840452 - MGP_C3HHeJ_P0046473 Wiz protein_coding protein_coding MGP_C3HHeJ_T0046474.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31812765 31840820 - MGP_C3HHeJ_P0046474 Wiz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046475.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31813353 31821670 - MGP_C3HHeJ_P0046475 Wiz protein_coding protein_coding MGP_C3HHeJ_T0046476.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31813728 31839326 - MGP_C3HHeJ_P0046476 Wiz protein_coding protein_coding MGP_C3HHeJ_T0046477.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31820381 31823170 - Wiz protein_coding processed_transcript MGP_C3HHeJ_T0046478.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31820520 31828072 - Wiz protein_coding retained_intron MGP_C3HHeJ_T0046479.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31820615 31840153 - MGP_C3HHeJ_P0046479 Wiz protein_coding protein_coding MGP_C3HHeJ_T0046480.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31825684 31840293 - Wiz protein_coding retained_intron MGP_C3HHeJ_T0046481.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31826724 31840517 - MGP_C3HHeJ_P0046481 Wiz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046482.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31827958 31840805 - MGP_C3HHeJ_P0046482 Wiz protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046483.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31828072 31840830 - Wiz protein_coding retained_intron MGP_C3HHeJ_T0046484.1 MGP_C3HHeJ_G0023227.1 mouse_genomes_project 17 31839139 31840678 - MGP_C3HHeJ_P0046484 Wiz protein_coding protein_coding MGP_C3HHeJ_T0046397.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760533 30861746 + MGP_C3HHeJ_P0046397 Pde9a protein_coding protein_coding MGP_C3HHeJ_T0046398.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760548 30861592 + MGP_C3HHeJ_P0046398 Pde9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046399.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760548 30861592 + MGP_C3HHeJ_P0046399 Pde9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046400.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760548 30861592 + MGP_C3HHeJ_P0046400 Pde9a protein_coding protein_coding MGP_C3HHeJ_T0046401.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760553 30861595 + MGP_C3HHeJ_P0046401 Pde9a protein_coding protein_coding MGP_C3HHeJ_T0046402.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760561 30861517 + MGP_C3HHeJ_P0046402 Pde9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046403.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760573 30861595 + MGP_C3HHeJ_P0046403 Pde9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046404.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760575 30857033 + Pde9a protein_coding retained_intron MGP_C3HHeJ_T0046405.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30760593 30837190 + MGP_C3HHeJ_P0046405 Pde9a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046406.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30810830 30841201 + MGP_C3HHeJ_P0046406 Pde9a protein_coding protein_coding MGP_C3HHeJ_T0046407.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30822455 30842263 + Pde9a protein_coding retained_intron MGP_C3HHeJ_T0046408.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30835401 30843773 + Pde9a protein_coding retained_intron MGP_C3HHeJ_T0046409.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30843700 30861577 + MGP_C3HHeJ_P0046409 Pde9a protein_coding protein_coding MGP_C3HHeJ_T0046410.1 MGP_C3HHeJ_G0023212.1 mouse_genomes_project 17 30856278 30861542 + Pde9a protein_coding processed_transcript MGP_C3HHeJ_T0046146.1 MGP_C3HHeJ_G0023153.1 mouse_genomes_project 17 26878474 26924315 + MGP_C3HHeJ_P0046146 Uhrf1bp1 protein_coding protein_coding MGP_C3HHeJ_T0046147.1 MGP_C3HHeJ_G0023153.1 mouse_genomes_project 17 26879227 26903059 + Uhrf1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0046148.1 MGP_C3HHeJ_G0023153.1 mouse_genomes_project 17 26914334 26919581 + Uhrf1bp1 protein_coding processed_transcript MGP_C3HHeJ_T0045300.1 MGP_C3HHeJ_G0022895.1 mouse_genomes_project 17 12562634 12668647 - MGP_C3HHeJ_P0045300 Wdr27 protein_coding protein_coding MGP_C3HHeJ_T0048350.1 MGP_C3HHeJ_G0023784.1 mouse_genomes_project 17 82785402 82793360 + MGP_C3HHeJ_P0048350 Morn2 protein_coding protein_coding MGP_C3HHeJ_T0046997.1 MGP_C3HHeJ_G0023341.1 mouse_genomes_project 17 34918017 34919456 + MGP_C3HHeJ_P0046997 Ly6g6e protein_coding protein_coding MGP_C3HHeJ_T0046998.1 MGP_C3HHeJ_G0023341.1 mouse_genomes_project 17 34918046 34919712 + MGP_C3HHeJ_P0046998 Ly6g6e protein_coding protein_coding MGP_C3HHeJ_T0046999.1 MGP_C3HHeJ_G0023341.1 mouse_genomes_project 17 34918052 34919962 + MGP_C3HHeJ_P0046999 Ly6g6e protein_coding protein_coding MGP_C3HHeJ_T0047000.1 MGP_C3HHeJ_G0023341.1 mouse_genomes_project 17 34918270 34919447 + MGP_C3HHeJ_P0047000 Ly6g6e protein_coding protein_coding MGP_C3HHeJ_T0045669.1 MGP_C3HHeJ_G0023039.1 mouse_genomes_project 17 23497802 23500219 - MGP_C3HHeJ_P0045669 Gfer protein_coding protein_coding MGP_C3HHeJ_T0047901.1 MGP_C3HHeJ_G0023623.1 mouse_genomes_project 17 57313938 57330942 - MGP_C3HHeJ_P0047901 Zfp119a protein_coding protein_coding MGP_C3HHeJ_T0048420.1 MGP_C3HHeJ_G0023817.1 mouse_genomes_project 17 89241007 89248546 - MGP_C3HHeJ_P0048420 Gm10309 protein_coding protein_coding MGP_C3HHeJ_T0045730.1 MGP_C3HHeJ_G0023056.1 mouse_genomes_project 17 23711072 23712245 + MGP_C3HHeJ_P0045730 Mrps34 protein_coding protein_coding MGP_C3HHeJ_T0045731.1 MGP_C3HHeJ_G0023056.1 mouse_genomes_project 17 23711079 23713468 + MGP_C3HHeJ_P0045731 Mrps34 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045732.1 MGP_C3HHeJ_G0023056.1 mouse_genomes_project 17 23711091 23712072 + Mrps34 protein_coding retained_intron MGP_C3HHeJ_T0098074.1 MGP_C3HHeJ_G0036286.1 mouse_genomes_project 17 64939126 64939237 - Gm25348 rRNA rRNA MGP_C3HHeJ_T0046375.1 MGP_C3HHeJ_G0023201.1 mouse_genomes_project 17 29903449 30206645 + MGP_C3HHeJ_P0046375 Dnah8 protein_coding protein_coding MGP_C3HHeJ_T0046376.1 MGP_C3HHeJ_G0023201.1 mouse_genomes_project 17 29922912 30206650 + MGP_C3HHeJ_P0046376 Dnah8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101835.1 MGP_C3HHeJ_G0039800.1 mouse_genomes_project 17 36620531 36621723 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0100348.1 MGP_C3HHeJ_G0038542.1 mouse_genomes_project 17 64271931 64272065 - Gm25800 snoRNA snoRNA MGP_C3HHeJ_T0047862.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53068930 53166778 - MGP_C3HHeJ_P0047862 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047863.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53068931 53160714 - MGP_C3HHeJ_P0047863 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047864.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53071637 53168398 - MGP_C3HHeJ_P0047864 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047865.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53072196 53144070 - MGP_C3HHeJ_P0047865 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047866.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53072199 53160692 - MGP_C3HHeJ_P0047866 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047867.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53072215 53148155 - MGP_C3HHeJ_P0047867 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047868.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53072220 53145831 - MGP_C3HHeJ_P0047868 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047869.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53072732 53075011 - Satb1 protein_coding retained_intron MGP_C3HHeJ_T0047870.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53135480 53142283 - Satb1 protein_coding processed_transcript MGP_C3HHeJ_T0047871.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53137516 53154242 - MGP_C3HHeJ_P0047871 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047872.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53138513 53166125 - MGP_C3HHeJ_P0047872 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047873.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53140230 53144070 - Satb1 protein_coding retained_intron MGP_C3HHeJ_T0047874.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53142339 53160714 - MGP_C3HHeJ_P0047874 Satb1 protein_coding protein_coding MGP_C3HHeJ_T0047875.1 MGP_C3HHeJ_G0023609.1 mouse_genomes_project 17 53157645 53163623 - Satb1 protein_coding retained_intron MGP_C3HHeJ_T0046719.1 MGP_C3HHeJ_G0023283.1 mouse_genomes_project 17 33654964 33657846 + MGP_C3HHeJ_P0046719 H2-Oa protein_coding protein_coding MGP_C3HHeJ_T0046720.1 MGP_C3HHeJ_G0023283.1 mouse_genomes_project 17 33655046 33657845 + H2-Oa protein_coding retained_intron MGP_C3HHeJ_T0047806.1 MGP_C3HHeJ_G0023594.1 mouse_genomes_project 17 49511355 49517228 + MGP_C3HHeJ_P0047806 Trem2 protein_coding protein_coding MGP_C3HHeJ_T0047807.1 MGP_C3HHeJ_G0023594.1 mouse_genomes_project 17 49511394 49519102 + Trem2 protein_coding retained_intron MGP_C3HHeJ_T0047808.1 MGP_C3HHeJ_G0023594.1 mouse_genomes_project 17 49511442 49517228 + MGP_C3HHeJ_P0047808 Trem2 protein_coding protein_coding MGP_C3HHeJ_T0047809.1 MGP_C3HHeJ_G0023594.1 mouse_genomes_project 17 49511443 49515513 + Trem2 protein_coding processed_transcript MGP_C3HHeJ_T0045848.1 MGP_C3HHeJ_G0023081.1 mouse_genomes_project 17 24343096 24350513 - MGP_C3HHeJ_P0045848 Sstr5 protein_coding protein_coding MGP_C3HHeJ_T0045849.1 MGP_C3HHeJ_G0023081.1 mouse_genomes_project 17 24343096 24350513 - MGP_C3HHeJ_P0045849 Sstr5 protein_coding protein_coding MGP_C3HHeJ_T0045411.1 MGP_C3HHeJ_G0022948.1 mouse_genomes_project 17 19344956 19365050 + MGP_C3HHeJ_P0045411 Zfp160 protein_coding protein_coding MGP_C3HHeJ_T0101856.1 MGP_C3HHeJ_G0039821.1 mouse_genomes_project 17 37648102 37648659 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011333.1 MGP_C3HHeJ_G0009466.1 mouse_genomes_project 17 47405073 47405397 + Gm23037 misc_RNA misc_RNA MGP_C3HHeJ_T0045174.1 MGP_C3HHeJ_G0022861.1 mouse_genomes_project 17 5672171 5695415 + MGP_C3HHeJ_P0045174 Ccr6 protein_coding protein_coding MGP_C3HHeJ_T0045175.1 MGP_C3HHeJ_G0022861.1 mouse_genomes_project 17 5678580 5695415 + MGP_C3HHeJ_P0045175 Ccr6 protein_coding protein_coding MGP_C3HHeJ_T0045176.1 MGP_C3HHeJ_G0022861.1 mouse_genomes_project 17 5679862 5695415 + MGP_C3HHeJ_P0045176 Ccr6 protein_coding protein_coding MGP_C3HHeJ_T0045177.1 MGP_C3HHeJ_G0022861.1 mouse_genomes_project 17 5679862 5695415 + MGP_C3HHeJ_P0045177 Ccr6 protein_coding protein_coding MGP_C3HHeJ_T0045178.1 MGP_C3HHeJ_G0022861.1 mouse_genomes_project 17 5679862 5695415 + MGP_C3HHeJ_P0045178 Ccr6 protein_coding protein_coding MGP_C3HHeJ_T0045179.1 MGP_C3HHeJ_G0022861.1 mouse_genomes_project 17 5679862 5695415 + MGP_C3HHeJ_P0045179 Ccr6 protein_coding protein_coding MGP_C3HHeJ_T0013093.1 MGP_C3HHeJ_G0011197.1 mouse_genomes_project 17 35508417 35508612 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046637.1 MGP_C3HHeJ_G0023268.1 mouse_genomes_project 17 33449434 33453912 + MGP_C3HHeJ_P0046637 Tapbp protein_coding protein_coding MGP_C3HHeJ_T0046640.1 MGP_C3HHeJ_G0023268.1 mouse_genomes_project 17 33452828 33462825 + MGP_C3HHeJ_P0046640 Tapbp protein_coding protein_coding MGP_C3HHeJ_T0046641.1 MGP_C3HHeJ_G0023268.1 mouse_genomes_project 17 33453008 33453872 + Tapbp protein_coding retained_intron MGP_C3HHeJ_T0046642.1 MGP_C3HHeJ_G0023268.1 mouse_genomes_project 17 33454024 33459738 + Tapbp protein_coding processed_transcript MGP_C3HHeJ_T0046643.1 MGP_C3HHeJ_G0023268.1 mouse_genomes_project 17 33459658 33461814 + Tapbp protein_coding retained_intron MGP_C3HHeJ_T0006818.1 MGP_C3HHeJ_G0005610.1 mouse_genomes_project 17 14797429 14798290 + lincRNA lincRNA MGP_C3HHeJ_T0047498.1 MGP_C3HHeJ_G0023517.1 mouse_genomes_project 17 46483111 46490610 + MGP_C3HHeJ_P0047498 Nfkbie protein_coding protein_coding MGP_C3HHeJ_T0000968.1 MGP_C3HHeJ_G0000905.1 mouse_genomes_project 17 91441382 91441563 + TEC TEC MGP_C3HHeJ_T0101782.1 MGP_C3HHeJ_G0039747.1 mouse_genomes_project 17 16880638 16880764 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046459.1 MGP_C3HHeJ_G0023223.1 mouse_genomes_project 17 31628778 31634778 - MGP_C3HHeJ_P0046459 Ephx3 protein_coding protein_coding MGP_C3HHeJ_T0046460.1 MGP_C3HHeJ_G0023223.1 mouse_genomes_project 17 31629365 31634864 - MGP_C3HHeJ_P0046460 Ephx3 protein_coding protein_coding MGP_C3HHeJ_T0047111.1 MGP_C3HHeJ_G0023372.1 mouse_genomes_project 17 35550057 35615620 + MGP_C3HHeJ_P0047111 Sfta2 protein_coding protein_coding MGP_C3HHeJ_T0047112.1 MGP_C3HHeJ_G0023372.1 mouse_genomes_project 17 35550086 35615618 + Sfta2 protein_coding processed_transcript MGP_C3HHeJ_T0047116.1 MGP_C3HHeJ_G0023372.1 mouse_genomes_project 17 35614760 35615624 + MGP_C3HHeJ_P0047116 Sfta2 protein_coding protein_coding MGP_C3HHeJ_T0046346.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28841086 28887588 + MGP_C3HHeJ_P0046346 Cmtr1 protein_coding protein_coding MGP_C3HHeJ_T0046347.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28841298 28856065 + MGP_C3HHeJ_P0046347 Cmtr1 protein_coding protein_coding MGP_C3HHeJ_T0046348.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28860671 28872032 + Cmtr1 protein_coding retained_intron MGP_C3HHeJ_T0046349.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28861053 28863960 + MGP_C3HHeJ_P0046349 Cmtr1 protein_coding protein_coding MGP_C3HHeJ_T0046350.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28862238 28871616 + Cmtr1 protein_coding processed_transcript MGP_C3HHeJ_T0046351.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28862968 28867723 + Cmtr1 protein_coding processed_transcript MGP_C3HHeJ_T0046352.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28863943 28871720 + Cmtr1 protein_coding retained_intron MGP_C3HHeJ_T0046353.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28867589 28871702 + Cmtr1 protein_coding retained_intron MGP_C3HHeJ_T0046354.1 MGP_C3HHeJ_G0023195.1 mouse_genomes_project 17 28868848 28884968 + Cmtr1 protein_coding retained_intron MGP_C3HHeJ_T0013107.1 MGP_C3HHeJ_G0011211.1 mouse_genomes_project 17 37328288 37328885 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098069.1 MGP_C3HHeJ_G0036281.1 mouse_genomes_project 17 30416832 30416960 + Gm25447 rRNA rRNA MGP_C3HHeJ_T0045350.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15774417 15776136 + Spaca6 protein_coding processed_transcript MGP_C3HHeJ_T0045351.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15774591 15775769 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045352.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15774702 15782787 + MGP_C3HHeJ_P0045352 Spaca6 protein_coding protein_coding MGP_C3HHeJ_T0045353.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15774762 15786727 + MGP_C3HHeJ_P0045353 Spaca6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045354.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15774878 15782225 + Spaca6 protein_coding processed_transcript MGP_C3HHeJ_T0045355.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15774878 15782225 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045356.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15775142 15781439 + MGP_C3HHeJ_P0045356 Spaca6 protein_coding protein_coding MGP_C3HHeJ_T0045357.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15775737 15779869 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045358.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15776666 15780741 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045359.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15779664 15782238 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045360.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15781219 15782787 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045361.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15781409 15782783 + MGP_C3HHeJ_P0045361 Spaca6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045362.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15781996 15782787 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045363.1 MGP_C3HHeJ_G0022909.1 mouse_genomes_project 17 15782287 15782787 + Spaca6 protein_coding retained_intron MGP_C3HHeJ_T0045212.1 MGP_C3HHeJ_G0022869.1 mouse_genomes_project 17 6456501 6481085 + MGP_C3HHeJ_P0045212 1700010I14Rik protein_coding protein_coding MGP_C3HHeJ_T0045213.1 MGP_C3HHeJ_G0022869.1 mouse_genomes_project 17 6456525 6481084 + MGP_C3HHeJ_P0045213 1700010I14Rik protein_coding protein_coding MGP_C3HHeJ_T0045214.1 MGP_C3HHeJ_G0022869.1 mouse_genomes_project 17 6456551 6478038 + 1700010I14Rik protein_coding processed_transcript MGP_C3HHeJ_T0013081.1 MGP_C3HHeJ_G0011185.1 mouse_genomes_project 17 25164915 25165848 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006905.1 MGP_C3HHeJ_G0005676.1 mouse_genomes_project 17 90079628 90086310 - 4833418N02Rik lincRNA lincRNA MGP_C3HHeJ_T0006906.1 MGP_C3HHeJ_G0005676.1 mouse_genomes_project 17 90079663 90087431 - 4833418N02Rik lincRNA lincRNA MGP_C3HHeJ_T0006907.1 MGP_C3HHeJ_G0005676.1 mouse_genomes_project 17 90079989 90087117 - 4833418N02Rik lincRNA lincRNA MGP_C3HHeJ_T0006908.1 MGP_C3HHeJ_G0005676.1 mouse_genomes_project 17 90084859 90087396 - 4833418N02Rik lincRNA lincRNA MGP_C3HHeJ_T0047394.1 MGP_C3HHeJ_G0023461.1 mouse_genomes_project 17 38318356 38319349 - MGP_C3HHeJ_P0047394 Olfr129 protein_coding protein_coding MGP_C3HHeJ_T0047395.1 MGP_C3HHeJ_G0023461.1 mouse_genomes_project 17 38318356 38323542 - MGP_C3HHeJ_P0047395 Olfr129 protein_coding protein_coding MGP_C3HHeJ_T0048181.1 MGP_C3HHeJ_G0023724.1 mouse_genomes_project 17 73045559 73046051 + MGP_C3HHeJ_P0048181 Gm16519 protein_coding protein_coding MGP_C3HHeJ_T0046522.1 MGP_C3HHeJ_G0023240.1 mouse_genomes_project 17 32413270 32425086 - MGP_C3HHeJ_P0046522 Cyp4f14 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048244.1 MGP_C3HHeJ_G0023742.1 mouse_genomes_project 17 75522645 75619293 - MGP_C3HHeJ_P0048244 Capn13 protein_coding protein_coding MGP_C3HHeJ_T0047379.1 MGP_C3HHeJ_G0023446.1 mouse_genomes_project 17 37829050 37847139 - MGP_C3HHeJ_P0047379 protein_coding protein_coding MGP_C3HHeJ_T0099101.1 MGP_C3HHeJ_G0037295.1 mouse_genomes_project 17 82583698 82583804 + Gm23125 snRNA snRNA MGP_C3HHeJ_T0047412.1 MGP_C3HHeJ_G0023472.1 mouse_genomes_project 17 39528792 39530625 + MGP_C3HHeJ_P0047412 Esp24 protein_coding protein_coding MGP_C3HHeJ_T0046240.1 MGP_C3HHeJ_G0023171.1 mouse_genomes_project 17 27741840 27792699 - MGP_C3HHeJ_P0046240 Slc26a8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046241.1 MGP_C3HHeJ_G0023171.1 mouse_genomes_project 17 27741840 27793082 - MGP_C3HHeJ_P0046241 Slc26a8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046242.1 MGP_C3HHeJ_G0023171.1 mouse_genomes_project 17 27741844 27798279 - MGP_C3HHeJ_P0046242 Slc26a8 protein_coding protein_coding MGP_C3HHeJ_T0046243.1 MGP_C3HHeJ_G0023171.1 mouse_genomes_project 17 27754435 27798279 - Slc26a8 protein_coding retained_intron MGP_C3HHeJ_T0047279.1 MGP_C3HHeJ_G0023403.1 mouse_genomes_project 17 36586304 36589722 - MGP_C3HHeJ_P0047279 H2-M10.4 protein_coding protein_coding MGP_C3HHeJ_T0011332.1 MGP_C3HHeJ_G0009465.1 mouse_genomes_project 17 44828894 44829180 - Gm24532 misc_RNA misc_RNA MGP_C3HHeJ_T0045385.1 MGP_C3HHeJ_G0022928.1 mouse_genomes_project 17 18051986 18108434 + MGP_C3HHeJ_P0045385 Vmn2r103 protein_coding protein_coding MGP_C3HHeJ_T0045235.1 MGP_C3HHeJ_G0022875.1 mouse_genomes_project 17 9789979 9879039 - MGP_C3HHeJ_P0045235 Map3k4 protein_coding protein_coding MGP_C3HHeJ_T0048233.1 MGP_C3HHeJ_G0023737.1 mouse_genomes_project 17 73936732 74015624 + MGP_C3HHeJ_P0048233 Clip4 protein_coding protein_coding MGP_C3HHeJ_T0048234.1 MGP_C3HHeJ_G0023737.1 mouse_genomes_project 17 73937703 74015630 + MGP_C3HHeJ_P0048234 Clip4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0100341.1 MGP_C3HHeJ_G0038535.1 mouse_genomes_project 17 35014355 35014489 - Gm23442 snoRNA snoRNA MGP_C3HHeJ_T0048456.1 MGP_C3HHeJ_G0023830.1 mouse_genomes_project 17 90522331 90580354 + MGP_C3HHeJ_P0048456 Msh2 protein_coding protein_coding MGP_C3HHeJ_T0048457.1 MGP_C3HHeJ_G0023830.1 mouse_genomes_project 17 90522541 90530966 + Msh2 protein_coding retained_intron MGP_C3HHeJ_T0048458.1 MGP_C3HHeJ_G0023830.1 mouse_genomes_project 17 90522562 90561776 + Msh2 protein_coding retained_intron MGP_C3HHeJ_T0048459.1 MGP_C3HHeJ_G0023830.1 mouse_genomes_project 17 90522610 90536910 + MGP_C3HHeJ_P0048459 Msh2 protein_coding protein_coding MGP_C3HHeJ_T0048460.1 MGP_C3HHeJ_G0023830.1 mouse_genomes_project 17 90541456 90549051 + Msh2 protein_coding retained_intron MGP_C3HHeJ_T0048461.1 MGP_C3HHeJ_G0023830.1 mouse_genomes_project 17 90548888 90574313 + MGP_C3HHeJ_P0048461 Msh2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046982.1 MGP_C3HHeJ_G0023336.1 mouse_genomes_project 17 34890505 34899911 + MGP_C3HHeJ_P0046982 Clic1 protein_coding protein_coding MGP_C3HHeJ_T0046983.1 MGP_C3HHeJ_G0023336.1 mouse_genomes_project 17 34892855 34896086 + Clic1 protein_coding retained_intron MGP_C3HHeJ_T0003652.1 MGP_C3HHeJ_G0003292.1 mouse_genomes_project 17 22475154 22482257 + Gm16275 antisense antisense MGP_C3HHeJ_T0045945.1 MGP_C3HHeJ_G0023104.1 mouse_genomes_project 17 24741443 24744119 - MGP_C3HHeJ_P0045945 Wfikkn1 protein_coding protein_coding MGP_C3HHeJ_T0045946.1 MGP_C3HHeJ_G0023104.1 mouse_genomes_project 17 24742617 24744050 - MGP_C3HHeJ_P0045946 Wfikkn1 protein_coding protein_coding MGP_C3HHeJ_T0047398.1 MGP_C3HHeJ_G0023463.1 mouse_genomes_project 17 38396771 38397713 - MGP_C3HHeJ_P0047398 Olfr132 protein_coding protein_coding MGP_C3HHeJ_T0045847.1 MGP_C3HHeJ_G0023080.1 mouse_genomes_project 17 24323468 24328471 + MGP_C3HHeJ_P0045847 Tekt4 protein_coding protein_coding MGP_C3HHeJ_T0045554.1 MGP_C3HHeJ_G0023012.1 mouse_genomes_project 17 22791454 22816938 - MGP_C3HHeJ_P0045554 Kctd5 protein_coding protein_coding MGP_C3HHeJ_T0045555.1 MGP_C3HHeJ_G0023012.1 mouse_genomes_project 17 22799487 22811742 - Kctd5 protein_coding processed_transcript MGP_C3HHeJ_T0048225.1 MGP_C3HHeJ_G0023734.1 mouse_genomes_project 17 73763538 73809762 + MGP_C3HHeJ_P0048225 Wdr43 protein_coding protein_coding MGP_C3HHeJ_T0048083.1 MGP_C3HHeJ_G0023699.1 mouse_genomes_project 17 67155389 67450613 - MGP_C3HHeJ_P0048083 Tmem232 protein_coding protein_coding MGP_C3HHeJ_T0048084.1 MGP_C3HHeJ_G0023699.1 mouse_genomes_project 17 67155391 67450607 - MGP_C3HHeJ_P0048084 Tmem232 protein_coding protein_coding MGP_C3HHeJ_T0013160.1 MGP_C3HHeJ_G0011264.1 mouse_genomes_project 17 93746537 93747778 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010094.1 MGP_C3HHeJ_G0008227.1 mouse_genomes_project 17 24084513 24084601 - Mir3547 miRNA miRNA MGP_C3HHeJ_T0013070.1 MGP_C3HHeJ_G0011174.1 mouse_genomes_project 17 10559168 10559591 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047393.1 MGP_C3HHeJ_G0023460.1 mouse_genomes_project 17 38161634 38162729 + MGP_C3HHeJ_P0047393 Olfr127 protein_coding protein_coding MGP_C3HHeJ_T0047361.1 MGP_C3HHeJ_G0023431.1 mouse_genomes_project 17 37413831 37446923 - MGP_C3HHeJ_P0047361 protein_coding protein_coding MGP_C3HHeJ_T0011345.1 MGP_C3HHeJ_G0009478.1 mouse_genomes_project 17 88304930 88305202 + Gm27275 misc_RNA misc_RNA MGP_C3HHeJ_T0046198.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27388371 27390961 + MGP_C3HHeJ_P0046198 Rpl10a protein_coding protein_coding MGP_C3HHeJ_T0046199.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27388483 27389539 + Rpl10a protein_coding retained_intron MGP_C3HHeJ_T0046200.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27388484 27390961 + MGP_C3HHeJ_P0046200 Rpl10a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046201.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27388510 27389296 + Rpl10a protein_coding retained_intron MGP_C3HHeJ_T0046202.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27388547 27389423 + Rpl10a protein_coding retained_intron MGP_C3HHeJ_T0046203.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27388711 27390599 + Rpl10a protein_coding retained_intron MGP_C3HHeJ_T0046204.1 MGP_C3HHeJ_G0023162.1 mouse_genomes_project 17 27389178 27390956 + Rpl10a protein_coding retained_intron MGP_C3HHeJ_T0003658.1 MGP_C3HHeJ_G0003297.1 mouse_genomes_project 17 25536856 25541575 - Gm17218 antisense antisense MGP_C3HHeJ_T0101371.1 MGP_C3HHeJ_G0039433.1 mouse_genomes_project 17 33499629 33500468 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101372.1 MGP_C3HHeJ_G0039433.1 mouse_genomes_project 17 33499791 33500851 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0045383.1 MGP_C3HHeJ_G0022926.1 mouse_genomes_project 17 17838655 17879648 + MGP_C3HHeJ_P0045383 Vmn2r101 protein_coding protein_coding MGP_C3HHeJ_T0045609.1 MGP_C3HHeJ_G0023022.1 mouse_genomes_project 17 23192797 23203946 + MGP_C3HHeJ_P0045609 Rnps1 protein_coding protein_coding MGP_C3HHeJ_T0045610.1 MGP_C3HHeJ_G0023022.1 mouse_genomes_project 17 23192797 23203946 + MGP_C3HHeJ_P0045610 Rnps1 protein_coding protein_coding MGP_C3HHeJ_T0045611.1 MGP_C3HHeJ_G0023022.1 mouse_genomes_project 17 23192797 23203946 + MGP_C3HHeJ_P0045611 Rnps1 protein_coding protein_coding MGP_C3HHeJ_T0045767.1 MGP_C3HHeJ_G0023061.1 mouse_genomes_project 17 23884741 23908328 - MGP_C3HHeJ_P0045767 Tmem204 protein_coding protein_coding MGP_C3HHeJ_T0045768.1 MGP_C3HHeJ_G0023061.1 mouse_genomes_project 17 23884943 23905373 - MGP_C3HHeJ_P0045768 Tmem204 protein_coding protein_coding MGP_C3HHeJ_T0047371.1 MGP_C3HHeJ_G0023440.1 mouse_genomes_project 17 37685983 37688693 - MGP_C3HHeJ_P0047371 H2-M2 protein_coding protein_coding MGP_C3HHeJ_T0047372.1 MGP_C3HHeJ_G0023440.1 mouse_genomes_project 17 37686123 37688694 - MGP_C3HHeJ_P0047372 H2-M2 protein_coding protein_coding MGP_C3HHeJ_T0048354.1 MGP_C3HHeJ_G0023787.1 mouse_genomes_project 17 82893629 82983458 - MGP_C3HHeJ_P0048354 Sos1 protein_coding protein_coding MGP_C3HHeJ_T0006879.1 MGP_C3HHeJ_G0005657.1 mouse_genomes_project 17 51493617 51500776 + AY702103 lincRNA lincRNA MGP_C3HHeJ_T0006880.1 MGP_C3HHeJ_G0005657.1 mouse_genomes_project 17 51493813 51495934 + AY702103 lincRNA lincRNA MGP_C3HHeJ_T0047198.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35876450 35888934 - MGP_C3HHeJ_P0047198 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047199.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35876464 35888905 - MGP_C3HHeJ_P0047199 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047200.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35876467 35888916 - MGP_C3HHeJ_P0047200 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047201.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35876470 35877438 - Atat1 protein_coding retained_intron MGP_C3HHeJ_T0047202.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35876737 35887820 - MGP_C3HHeJ_P0047202 Atat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047203.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35878666 35888904 - MGP_C3HHeJ_P0047203 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047204.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35878701 35888904 - MGP_C3HHeJ_P0047204 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047205.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35879344 35883185 - MGP_C3HHeJ_P0047205 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047206.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35880835 35888294 - Atat1 protein_coding retained_intron MGP_C3HHeJ_T0047207.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35880852 35888432 - Atat1 protein_coding processed_transcript MGP_C3HHeJ_T0047208.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35880856 35887898 - Atat1 protein_coding retained_intron MGP_C3HHeJ_T0047209.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35880889 35888485 - MGP_C3HHeJ_P0047209 Atat1 protein_coding protein_coding MGP_C3HHeJ_T0047210.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35882188 35888598 - Atat1 protein_coding retained_intron MGP_C3HHeJ_T0047211.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35886823 35888904 - Atat1 protein_coding processed_transcript MGP_C3HHeJ_T0047212.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35887442 35888890 - MGP_C3HHeJ_P0047212 Atat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047213.1 MGP_C3HHeJ_G0023386.1 mouse_genomes_project 17 35887789 35888868 - Atat1 protein_coding retained_intron MGP_C3HHeJ_T0047748.1 MGP_C3HHeJ_G0023580.1 mouse_genomes_project 17 48786677 48797167 + MGP_C3HHeJ_P0047748 Frs3 protein_coding protein_coding MGP_C3HHeJ_T0047751.1 MGP_C3HHeJ_G0023580.1 mouse_genomes_project 17 48792846 48801904 + MGP_C3HHeJ_P0047751 Frs3 protein_coding protein_coding MGP_C3HHeJ_T0047752.1 MGP_C3HHeJ_G0023580.1 mouse_genomes_project 17 48792873 48795318 + Frs3 protein_coding processed_transcript MGP_C3HHeJ_T0047753.1 MGP_C3HHeJ_G0023580.1 mouse_genomes_project 17 48797174 48798491 + Frs3 protein_coding processed_transcript MGP_C3HHeJ_T0047754.1 MGP_C3HHeJ_G0023580.1 mouse_genomes_project 17 48799680 48801902 + Frs3 protein_coding processed_transcript MGP_C3HHeJ_T0045626.1 MGP_C3HHeJ_G0023029.1 mouse_genomes_project 17 23278437 23298405 + MGP_C3HHeJ_P0045626 Caskin1 protein_coding protein_coding MGP_C3HHeJ_T0100352.1 MGP_C3HHeJ_G0038546.1 mouse_genomes_project 17 73789214 73789292 + Snord53 snoRNA snoRNA MGP_C3HHeJ_T0017341.1 MGP_C3HHeJ_G0015109.1 mouse_genomes_project 17 33251283 33253165 + Gm17251 processed_transcript processed_transcript MGP_C3HHeJ_T0045310.1 MGP_C3HHeJ_G0022898.1 mouse_genomes_project 17 12791347 12798637 + MGP_C3HHeJ_P0045310 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048346.1 MGP_C3HHeJ_G0023782.1 mouse_genomes_project 17 82716817 82719186 + Gemin6 protein_coding processed_transcript MGP_C3HHeJ_T0048347.1 MGP_C3HHeJ_G0023782.1 mouse_genomes_project 17 82716817 82720865 + MGP_C3HHeJ_P0048347 Gemin6 protein_coding protein_coding MGP_C3HHeJ_T0047229.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35937799 35951729 - MGP_C3HHeJ_P0047229 Abcf1 protein_coding protein_coding MGP_C3HHeJ_T0047230.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35938267 35939467 - Abcf1 protein_coding retained_intron MGP_C3HHeJ_T0047231.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35938281 35939169 - Abcf1 protein_coding retained_intron MGP_C3HHeJ_T0047232.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35939051 35940447 - Abcf1 protein_coding retained_intron MGP_C3HHeJ_T0047233.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35939650 35940595 - Abcf1 protein_coding retained_intron MGP_C3HHeJ_T0047234.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35942681 35946237 - Abcf1 protein_coding retained_intron MGP_C3HHeJ_T0047235.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35944622 35951327 - MGP_C3HHeJ_P0047235 Abcf1 protein_coding protein_coding MGP_C3HHeJ_T0047236.1 MGP_C3HHeJ_G0023389.1 mouse_genomes_project 17 35946218 35951729 - MGP_C3HHeJ_P0047236 Abcf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048518.1 MGP_C3HHeJ_G0023844.1 mouse_genomes_project 17 97767754 97801937 - MGP_C3HHeJ_P0048518 Mettl4 protein_coding protein_coding MGP_C3HHeJ_T0010145.1 MGP_C3HHeJ_G0008278.1 mouse_genomes_project 17 94079501 94079562 + Gm27475 miRNA miRNA MGP_C3HHeJ_T0047378.1 MGP_C3HHeJ_G0023445.1 mouse_genomes_project 17 37814640 37815635 - MGP_C3HHeJ_P0047378 protein_coding protein_coding MGP_C3HHeJ_T0046168.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27215545 27245177 + Zfp523 protein_coding retained_intron MGP_C3HHeJ_T0046169.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27215677 27245177 + MGP_C3HHeJ_P0046169 Zfp523 protein_coding protein_coding MGP_C3HHeJ_T0046170.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27215756 27245175 + MGP_C3HHeJ_P0046170 Zfp523 protein_coding protein_coding MGP_C3HHeJ_T0046171.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27228278 27236146 + Zfp523 protein_coding processed_transcript MGP_C3HHeJ_T0046172.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27236130 27240829 + MGP_C3HHeJ_P0046172 Zfp523 protein_coding protein_coding MGP_C3HHeJ_T0046173.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27240641 27244453 + MGP_C3HHeJ_P0046173 Zfp523 protein_coding protein_coding MGP_C3HHeJ_T0046174.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27240816 27245177 + MGP_C3HHeJ_P0046174 Zfp523 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046175.1 MGP_C3HHeJ_G0023158.1 mouse_genomes_project 17 27243399 27244598 + Zfp523 protein_coding retained_intron MGP_C3HHeJ_T0045346.1 MGP_C3HHeJ_G0022906.1 mouse_genomes_project 17 13570540 13590853 - MGP_C3HHeJ_P0045346 Rgmb protein_coding protein_coding MGP_C3HHeJ_T0047464.1 MGP_C3HHeJ_G0023504.1 mouse_genomes_project 17 44476455 44501942 - MGP_C3HHeJ_P0047464 Slc25a27 protein_coding protein_coding MGP_C3HHeJ_T0047646.1 MGP_C3HHeJ_G0023545.1 mouse_genomes_project 17 47553215 47562531 - MGP_C3HHeJ_P0047646 Srf protein_coding protein_coding MGP_C3HHeJ_T0101786.1 MGP_C3HHeJ_G0039751.1 mouse_genomes_project 17 17509385 17546932 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048117.1 MGP_C3HHeJ_G0023709.1 mouse_genomes_project 17 68068975 68099718 + MGP_C3HHeJ_P0048117 Ddx11 protein_coding protein_coding MGP_C3HHeJ_T0048118.1 MGP_C3HHeJ_G0023709.1 mouse_genomes_project 17 68069133 68096781 + MGP_C3HHeJ_P0048118 Ddx11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045169.1 MGP_C3HHeJ_G0022858.1 mouse_genomes_project 17 5364469 5421535 + MGP_C3HHeJ_P0045169 protein_coding protein_coding MGP_C3HHeJ_T0048250.1 MGP_C3HHeJ_G0023746.1 mouse_genomes_project 17 76272221 76305613 - MGP_C3HHeJ_P0048250 Srd5a2 protein_coding protein_coding MGP_C3HHeJ_T0048185.1 MGP_C3HHeJ_G0023726.1 mouse_genomes_project 17 73118692 73128512 - MGP_C3HHeJ_P0048185 Myl12a protein_coding protein_coding MGP_C3HHeJ_T0048186.1 MGP_C3HHeJ_G0023726.1 mouse_genomes_project 17 73119323 73122905 - MGP_C3HHeJ_P0048186 Myl12a protein_coding protein_coding MGP_C3HHeJ_T0048187.1 MGP_C3HHeJ_G0023726.1 mouse_genomes_project 17 73119332 73128123 - Myl12a protein_coding retained_intron MGP_C3HHeJ_T0048188.1 MGP_C3HHeJ_G0023726.1 mouse_genomes_project 17 73121170 73128145 - MGP_C3HHeJ_P0048188 Myl12a protein_coding protein_coding MGP_C3HHeJ_T0048189.1 MGP_C3HHeJ_G0023726.1 mouse_genomes_project 17 73121421 73128118 - Myl12a protein_coding retained_intron MGP_C3HHeJ_T0048190.1 MGP_C3HHeJ_G0023726.1 mouse_genomes_project 17 73121742 73127975 - MGP_C3HHeJ_P0048190 Myl12a protein_coding protein_coding MGP_C3HHeJ_T0045197.1 MGP_C3HHeJ_G0022865.1 mouse_genomes_project 17 5786472 5790206 + MGP_C3HHeJ_P0045197 Prr18 protein_coding protein_coding MGP_C3HHeJ_T0045198.1 MGP_C3HHeJ_G0022865.1 mouse_genomes_project 17 5786805 5790206 + MGP_C3HHeJ_P0045198 Prr18 protein_coding protein_coding MGP_C3HHeJ_T0010084.1 MGP_C3HHeJ_G0008217.1 mouse_genomes_project 17 10441620 10441736 - Gm24085 miRNA miRNA MGP_C3HHeJ_T0045502.1 MGP_C3HHeJ_G0022990.1 mouse_genomes_project 17 22386045 22387480 - MGP_C3HHeJ_P0045502 Cldn9 protein_coding protein_coding MGP_C3HHeJ_T0003661.1 MGP_C3HHeJ_G0003300.1 mouse_genomes_project 17 26985809 26992220 - Gm15597 antisense antisense MGP_C3HHeJ_T0099092.1 MGP_C3HHeJ_G0037286.1 mouse_genomes_project 17 57112851 57112956 + Gm22654 snRNA snRNA MGP_C3HHeJ_T0047437.1 MGP_C3HHeJ_G0023492.1 mouse_genomes_project 17 43045974 43250920 + MGP_C3HHeJ_P0047437 Ptchd4 protein_coding protein_coding MGP_C3HHeJ_T0047959.1 MGP_C3HHeJ_G0023649.1 mouse_genomes_project 17 57936005 57986259 - MGP_C3HHeJ_P0047959 Ptprs protein_coding protein_coding MGP_C3HHeJ_T0047960.1 MGP_C3HHeJ_G0023649.1 mouse_genomes_project 17 57936007 58001410 - MGP_C3HHeJ_P0047960 Ptprs protein_coding protein_coding MGP_C3HHeJ_T0047961.1 MGP_C3HHeJ_G0023649.1 mouse_genomes_project 17 57945811 58001296 - Ptprs protein_coding processed_transcript MGP_C3HHeJ_T0047962.1 MGP_C3HHeJ_G0023649.1 mouse_genomes_project 17 57948623 57952976 - MGP_C3HHeJ_P0047962 Ptprs protein_coding unknown_likely_coding MGP_C3HHeJ_T0047963.1 MGP_C3HHeJ_G0023649.1 mouse_genomes_project 17 57948623 57954517 - MGP_C3HHeJ_P0047963 Ptprs protein_coding unknown_likely_coding MGP_C3HHeJ_T0046516.1 MGP_C3HHeJ_G0023238.1 mouse_genomes_project 17 32319333 32334452 - MGP_C3HHeJ_P0046516 Zfp799 protein_coding protein_coding MGP_C3HHeJ_T0046517.1 MGP_C3HHeJ_G0023238.1 mouse_genomes_project 17 32319339 32326063 - MGP_C3HHeJ_P0046517 Zfp799 protein_coding protein_coding MGP_C3HHeJ_T0046518.1 MGP_C3HHeJ_G0023238.1 mouse_genomes_project 17 32324686 32334419 - MGP_C3HHeJ_P0046518 Zfp799 protein_coding protein_coding MGP_C3HHeJ_T0046519.1 MGP_C3HHeJ_G0023238.1 mouse_genomes_project 17 32324940 32334437 - MGP_C3HHeJ_P0046519 Zfp799 protein_coding protein_coding MGP_C3HHeJ_T0046520.1 MGP_C3HHeJ_G0023238.1 mouse_genomes_project 17 32325304 32334406 - MGP_C3HHeJ_P0046520 Zfp799 protein_coding protein_coding MGP_C3HHeJ_T0045973.1 MGP_C3HHeJ_G0023108.1 mouse_genomes_project 17 24815560 24822374 - MGP_C3HHeJ_P0045973 A930017K11Rik protein_coding protein_coding MGP_C3HHeJ_T0048220.1 MGP_C3HHeJ_G0023732.1 mouse_genomes_project 17 73636329 73671516 - MGP_C3HHeJ_P0048220 Ndc80 protein_coding protein_coding MGP_C3HHeJ_T0047488.1 MGP_C3HHeJ_G0023511.1 mouse_genomes_project 17 45679496 46029828 + MGP_C3HHeJ_P0047488 Supt3 protein_coding protein_coding MGP_C3HHeJ_T0047489.1 MGP_C3HHeJ_G0023511.1 mouse_genomes_project 17 45686169 45834507 + Supt3 protein_coding processed_transcript MGP_C3HHeJ_T0047490.1 MGP_C3HHeJ_G0023511.1 mouse_genomes_project 17 45686240 46029824 + MGP_C3HHeJ_P0047490 Supt3 protein_coding protein_coding MGP_C3HHeJ_T0047491.1 MGP_C3HHeJ_G0023511.1 mouse_genomes_project 17 45695939 46029817 + MGP_C3HHeJ_P0047491 Supt3 protein_coding protein_coding MGP_C3HHeJ_T0003672.1 MGP_C3HHeJ_G0003307.1 mouse_genomes_project 17 32290456 32291654 + Gm17115 antisense antisense MGP_C3HHeJ_T0045252.1 MGP_C3HHeJ_G0022882.1 mouse_genomes_project 17 10456217 10458026 + MGP_C3HHeJ_P0045252 Mrgprh protein_coding protein_coding MGP_C3HHeJ_T0010125.1 MGP_C3HHeJ_G0008258.1 mouse_genomes_project 17 35941710 35941795 - Mir877 miRNA miRNA MGP_C3HHeJ_T0047154.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794336 35803921 + MGP_C3HHeJ_P0047154 Flot1 protein_coding protein_coding MGP_C3HHeJ_T0047155.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794453 35803740 + MGP_C3HHeJ_P0047155 Flot1 protein_coding protein_coding MGP_C3HHeJ_T0047156.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794488 35801149 + MGP_C3HHeJ_P0047156 Flot1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047157.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794532 35795506 + Flot1 protein_coding retained_intron MGP_C3HHeJ_T0047158.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794632 35796850 + MGP_C3HHeJ_P0047158 Flot1 protein_coding protein_coding MGP_C3HHeJ_T0047159.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794655 35796862 + MGP_C3HHeJ_P0047159 Flot1 protein_coding protein_coding MGP_C3HHeJ_T0047160.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35794699 35796849 + MGP_C3HHeJ_P0047160 Flot1 protein_coding protein_coding MGP_C3HHeJ_T0047161.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35795103 35796036 + Flot1 protein_coding retained_intron MGP_C3HHeJ_T0047162.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35801210 35803756 + Flot1 protein_coding retained_intron MGP_C3HHeJ_T0047163.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35801623 35803770 + Flot1 protein_coding retained_intron MGP_C3HHeJ_T0047164.1 MGP_C3HHeJ_G0023379.1 mouse_genomes_project 17 35801762 35802593 + Flot1 protein_coding retained_intron MGP_C3HHeJ_T0013145.1 MGP_C3HHeJ_G0011249.1 mouse_genomes_project 17 74877008 74877949 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048067.1 MGP_C3HHeJ_G0023693.1 mouse_genomes_project 17 64895632 65330270 - MGP_C3HHeJ_P0048067 Fbxl17 protein_coding protein_coding MGP_C3HHeJ_T0048068.1 MGP_C3HHeJ_G0023693.1 mouse_genomes_project 17 64896903 65339464 - MGP_C3HHeJ_P0048068 Fbxl17 protein_coding protein_coding MGP_C3HHeJ_T0048069.1 MGP_C3HHeJ_G0023693.1 mouse_genomes_project 17 64897232 65293801 - Fbxl17 protein_coding processed_transcript MGP_C3HHeJ_T0048070.1 MGP_C3HHeJ_G0023693.1 mouse_genomes_project 17 64898388 65289347 - Fbxl17 protein_coding processed_transcript MGP_C3HHeJ_T0048071.1 MGP_C3HHeJ_G0023693.1 mouse_genomes_project 17 65219939 65320435 - Fbxl17 protein_coding processed_transcript MGP_C3HHeJ_T0046178.1 MGP_C3HHeJ_G0023160.1 mouse_genomes_project 17 27275542 27360382 + MGP_C3HHeJ_P0046178 Ppard protein_coding protein_coding MGP_C3HHeJ_T0046179.1 MGP_C3HHeJ_G0023160.1 mouse_genomes_project 17 27275554 27355108 + Ppard protein_coding retained_intron MGP_C3HHeJ_T0046180.1 MGP_C3HHeJ_G0023160.1 mouse_genomes_project 17 27275570 27358590 + Ppard protein_coding processed_transcript MGP_C3HHeJ_T0046181.1 MGP_C3HHeJ_G0023160.1 mouse_genomes_project 17 27275595 27358668 + Ppard protein_coding retained_intron MGP_C3HHeJ_T0046182.1 MGP_C3HHeJ_G0023160.1 mouse_genomes_project 17 27329374 27330830 + Ppard protein_coding processed_transcript MGP_C3HHeJ_T0046183.1 MGP_C3HHeJ_G0023160.1 mouse_genomes_project 17 27329859 27357445 + MGP_C3HHeJ_P0046183 Ppard protein_coding protein_coding MGP_C3HHeJ_T0013095.1 MGP_C3HHeJ_G0011199.1 mouse_genomes_project 17 36209808 36210354 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046508.1 MGP_C3HHeJ_G0023235.1 mouse_genomes_project 17 32174367 32200489 + MGP_C3HHeJ_P0046508 Cyp4f15 protein_coding protein_coding MGP_C3HHeJ_T0046509.1 MGP_C3HHeJ_G0023235.1 mouse_genomes_project 17 32174408 32187993 + Cyp4f15 protein_coding retained_intron MGP_C3HHeJ_T0046510.1 MGP_C3HHeJ_G0023235.1 mouse_genomes_project 17 32174411 32195032 + Cyp4f15 protein_coding processed_transcript MGP_C3HHeJ_T0046511.1 MGP_C3HHeJ_G0023235.1 mouse_genomes_project 17 32174419 32200489 + MGP_C3HHeJ_P0046511 Cyp4f15 protein_coding protein_coding MGP_C3HHeJ_T0047250.1 MGP_C3HHeJ_G0023394.1 mouse_genomes_project 17 36034242 36039846 + MGP_C3HHeJ_P0047250 protein_coding protein_coding MGP_C3HHeJ_T0048398.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87332964 87422788 - MGP_C3HHeJ_P0048398 Lrpprc protein_coding protein_coding MGP_C3HHeJ_T0048399.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87340513 87358914 - Lrpprc protein_coding processed_transcript MGP_C3HHeJ_T0048400.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87358909 87379900 - MGP_C3HHeJ_P0048400 Lrpprc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048401.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87377418 87379900 - Lrpprc protein_coding retained_intron MGP_C3HHeJ_T0048402.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87396180 87423019 - Lrpprc protein_coding retained_intron MGP_C3HHeJ_T0048403.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87397341 87422792 - Lrpprc protein_coding retained_intron MGP_C3HHeJ_T0048404.1 MGP_C3HHeJ_G0023808.1 mouse_genomes_project 17 87400240 87409773 - Lrpprc protein_coding processed_transcript MGP_C3HHeJ_T0101840.1 MGP_C3HHeJ_G0039805.1 mouse_genomes_project 17 36726086 36726233 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047424.1 MGP_C3HHeJ_G0023484.1 mouse_genomes_project 17 41307286 41311310 + MGP_C3HHeJ_P0047424 Esp4 protein_coding protein_coding MGP_C3HHeJ_T0047649.1 MGP_C3HHeJ_G0023548.1 mouse_genomes_project 17 47667053 47668478 + Mrpl2 protein_coding processed_transcript MGP_C3HHeJ_T0047650.1 MGP_C3HHeJ_G0023548.1 mouse_genomes_project 17 47667080 47670950 + MGP_C3HHeJ_P0047650 Mrpl2 protein_coding protein_coding MGP_C3HHeJ_T0047651.1 MGP_C3HHeJ_G0023548.1 mouse_genomes_project 17 47667113 47670949 + MGP_C3HHeJ_P0047651 Mrpl2 protein_coding protein_coding MGP_C3HHeJ_T0047652.1 MGP_C3HHeJ_G0023548.1 mouse_genomes_project 17 47669822 47670809 + Mrpl2 protein_coding processed_transcript MGP_C3HHeJ_T0013102.1 MGP_C3HHeJ_G0011206.1 mouse_genomes_project 17 36549653 36550021 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046303.1 MGP_C3HHeJ_G0023184.1 mouse_genomes_project 17 28394991 28409765 - MGP_C3HHeJ_P0046303 Ppil1 protein_coding protein_coding MGP_C3HHeJ_T0046304.1 MGP_C3HHeJ_G0023184.1 mouse_genomes_project 17 28395411 28402155 - Ppil1 protein_coding retained_intron MGP_C3HHeJ_T0046305.1 MGP_C3HHeJ_G0023184.1 mouse_genomes_project 17 28395450 28409521 - MGP_C3HHeJ_P0046305 Ppil1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046306.1 MGP_C3HHeJ_G0023184.1 mouse_genomes_project 17 28406708 28409547 - Ppil1 protein_coding processed_transcript MGP_C3HHeJ_T0011336.1 MGP_C3HHeJ_G0009469.1 mouse_genomes_project 17 62998681 62998977 + Gm23773 misc_RNA misc_RNA MGP_C3HHeJ_T0045167.1 MGP_C3HHeJ_G0022856.1 mouse_genomes_project 17 5327001 5337883 + MGP_C3HHeJ_P0045167 protein_coding protein_coding MGP_C3HHeJ_T0046770.1 MGP_C3HHeJ_G0023295.1 mouse_genomes_project 17 33888732 33904689 + MGP_C3HHeJ_P0046770 H2-Eb1 protein_coding protein_coding MGP_C3HHeJ_T0046024.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25147936 25180380 + MGP_C3HHeJ_P0046024 Luc7l protein_coding protein_coding MGP_C3HHeJ_T0046025.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25147977 25185106 + MGP_C3HHeJ_P0046025 Luc7l protein_coding protein_coding MGP_C3HHeJ_T0046026.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25147982 25177476 + MGP_C3HHeJ_P0046026 Luc7l protein_coding protein_coding MGP_C3HHeJ_T0046027.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25147992 25181582 + MGP_C3HHeJ_P0046027 Luc7l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046028.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25147992 25181580 + MGP_C3HHeJ_P0046028 Luc7l protein_coding protein_coding MGP_C3HHeJ_T0046029.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25148010 25180381 + Luc7l protein_coding retained_intron MGP_C3HHeJ_T0046030.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25148025 25180384 + MGP_C3HHeJ_P0046030 Luc7l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046031.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25148248 25161972 + MGP_C3HHeJ_P0046031 Luc7l protein_coding protein_coding MGP_C3HHeJ_T0046032.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25148411 25149280 + Luc7l protein_coding processed_transcript MGP_C3HHeJ_T0046033.1 MGP_C3HHeJ_G0023121.1 mouse_genomes_project 17 25162853 25181558 + MGP_C3HHeJ_P0046033 Luc7l protein_coding protein_coding MGP_C3HHeJ_T0003696.1 MGP_C3HHeJ_G0003324.1 mouse_genomes_project 17 45455367 45456550 + Runx2os3 antisense antisense MGP_C3HHeJ_T0003699.1 MGP_C3HHeJ_G0003327.1 mouse_genomes_project 17 46516222 46519205 + Gm17080 antisense antisense MGP_C3HHeJ_T0048101.1 MGP_C3HHeJ_G0023704.1 mouse_genomes_project 17 67779272 67817439 - MGP_C3HHeJ_P0048101 Ralbp1 protein_coding protein_coding MGP_C3HHeJ_T0048102.1 MGP_C3HHeJ_G0023704.1 mouse_genomes_project 17 67779272 67816607 - MGP_C3HHeJ_P0048102 Ralbp1 protein_coding protein_coding MGP_C3HHeJ_T0046832.1 MGP_C3HHeJ_G0023308.1 mouse_genomes_project 17 34322625 34324597 - Egfl8 protein_coding retained_intron MGP_C3HHeJ_T0046833.1 MGP_C3HHeJ_G0023308.1 mouse_genomes_project 17 34322626 34325248 - MGP_C3HHeJ_P0046833 Egfl8 protein_coding protein_coding MGP_C3HHeJ_T0046834.1 MGP_C3HHeJ_G0023308.1 mouse_genomes_project 17 34322630 34325248 - MGP_C3HHeJ_P0046834 Egfl8 protein_coding protein_coding MGP_C3HHeJ_T0046835.1 MGP_C3HHeJ_G0023308.1 mouse_genomes_project 17 34323053 34325065 - MGP_C3HHeJ_P0046835 Egfl8 protein_coding protein_coding MGP_C3HHeJ_T0046836.1 MGP_C3HHeJ_G0023308.1 mouse_genomes_project 17 34323440 34325233 - Egfl8 protein_coding retained_intron MGP_C3HHeJ_T0046837.1 MGP_C3HHeJ_G0023308.1 mouse_genomes_project 17 34324045 34324598 - Egfl8 protein_coding retained_intron MGP_C3HHeJ_T0006813.1 MGP_C3HHeJ_G0005605.1 mouse_genomes_project 17 9879263 9887369 + 4732491K20Rik lincRNA lincRNA MGP_C3HHeJ_T0011335.1 MGP_C3HHeJ_G0009468.1 mouse_genomes_project 17 49879103 49879361 - Gm23642 misc_RNA misc_RNA MGP_C3HHeJ_T0048030.1 MGP_C3HHeJ_G0023675.1 mouse_genomes_project 17 58627240 58635922 + MGP_C3HHeJ_P0048030 Crb3 protein_coding protein_coding MGP_C3HHeJ_T0048031.1 MGP_C3HHeJ_G0023675.1 mouse_genomes_project 17 58631280 58635928 + MGP_C3HHeJ_P0048031 Crb3 protein_coding protein_coding MGP_C3HHeJ_T0048032.1 MGP_C3HHeJ_G0023675.1 mouse_genomes_project 17 58631332 58635927 + MGP_C3HHeJ_P0048032 Crb3 protein_coding protein_coding MGP_C3HHeJ_T0048033.1 MGP_C3HHeJ_G0023675.1 mouse_genomes_project 17 58631348 58635437 + MGP_C3HHeJ_P0048033 Crb3 protein_coding protein_coding MGP_C3HHeJ_T0048034.1 MGP_C3HHeJ_G0023675.1 mouse_genomes_project 17 58631557 58635174 + MGP_C3HHeJ_P0048034 Crb3 protein_coding protein_coding MGP_C3HHeJ_T0046443.1 MGP_C3HHeJ_G0023218.1 mouse_genomes_project 17 31076391 31080173 + MGP_C3HHeJ_P0046443 Cryaa protein_coding protein_coding MGP_C3HHeJ_T0045240.1 MGP_C3HHeJ_G0022880.1 mouse_genomes_project 17 10250493 10343007 - MGP_C3HHeJ_P0045240 Igf2r protein_coding protein_coding MGP_C3HHeJ_T0045241.1 MGP_C3HHeJ_G0022880.1 mouse_genomes_project 17 10267473 10270226 - MGP_C3HHeJ_P0045241 Igf2r protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045242.1 MGP_C3HHeJ_G0022880.1 mouse_genomes_project 17 10318419 10321705 - MGP_C3HHeJ_P0045242 Igf2r protein_coding protein_coding MGP_C3HHeJ_T0010099.1 MGP_C3HHeJ_G0008232.1 mouse_genomes_project 17 25859035 25859093 + Gm27740 miRNA miRNA MGP_C3HHeJ_T0048004.1 MGP_C3HHeJ_G0023661.1 mouse_genomes_project 17 58321875 58327023 + MGP_C3HHeJ_P0048004 Dus3l protein_coding protein_coding MGP_C3HHeJ_T0101804.1 MGP_C3HHeJ_G0039769.1 mouse_genomes_project 17 21816298 21816949 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017382.1 MGP_C3HHeJ_G0015119.1 mouse_genomes_project 17 93824842 93830783 + 4930480K15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013127.1 MGP_C3HHeJ_G0011231.1 mouse_genomes_project 17 55073567 55074334 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101798.1 MGP_C3HHeJ_G0039763.1 mouse_genomes_project 17 19314068 19314492 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101851.1 MGP_C3HHeJ_G0039816.1 mouse_genomes_project 17 37584284 37585211 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047880.1 MGP_C3HHeJ_G0023613.1 mouse_genomes_project 17 54867104 54900888 - MGP_C3HHeJ_P0047880 Pp2d1 protein_coding protein_coding MGP_C3HHeJ_T0045470.1 MGP_C3HHeJ_G0022980.1 mouse_genomes_project 17 22060721 22076174 + MGP_C3HHeJ_P0045470 protein_coding protein_coding MGP_C3HHeJ_T0047953.1 MGP_C3HHeJ_G0023648.1 mouse_genomes_project 17 57839614 57871855 + MGP_C3HHeJ_P0047953 Kdm4b protein_coding protein_coding MGP_C3HHeJ_T0047954.1 MGP_C3HHeJ_G0023648.1 mouse_genomes_project 17 57839626 57925389 + MGP_C3HHeJ_P0047954 Kdm4b protein_coding protein_coding MGP_C3HHeJ_T0047955.1 MGP_C3HHeJ_G0023648.1 mouse_genomes_project 17 57839643 57925384 + MGP_C3HHeJ_P0047955 Kdm4b protein_coding protein_coding MGP_C3HHeJ_T0047956.1 MGP_C3HHeJ_G0023648.1 mouse_genomes_project 17 57892172 57907179 + Kdm4b protein_coding processed_transcript MGP_C3HHeJ_T0047957.1 MGP_C3HHeJ_G0023648.1 mouse_genomes_project 17 57916041 57916310 + Kdm4b protein_coding processed_transcript MGP_C3HHeJ_T0047958.1 MGP_C3HHeJ_G0023648.1 mouse_genomes_project 17 57916444 57925395 + MGP_C3HHeJ_P0047958 Kdm4b protein_coding protein_coding MGP_C3HHeJ_T0047369.1 MGP_C3HHeJ_G0023438.1 mouse_genomes_project 17 37642143 37643181 + MGP_C3HHeJ_P0047369 protein_coding protein_coding MGP_C3HHeJ_T0017322.1 MGP_C3HHeJ_G0015099.1 mouse_genomes_project 17 11283575 11291016 - Gm16046 processed_transcript processed_transcript MGP_C3HHeJ_T0017323.1 MGP_C3HHeJ_G0015099.1 mouse_genomes_project 17 11287070 11291006 - Gm16046 processed_transcript processed_transcript MGP_C3HHeJ_T0017324.1 MGP_C3HHeJ_G0015099.1 mouse_genomes_project 17 11287558 11291035 - Gm16046 processed_transcript processed_transcript MGP_C3HHeJ_T0006823.1 MGP_C3HHeJ_G0005615.1 mouse_genomes_project 17 22245886 22247431 + Gm26695 lincRNA lincRNA MGP_C3HHeJ_T0047362.1 MGP_C3HHeJ_G0023432.1 mouse_genomes_project 17 37413831 37415810 - MGP_C3HHeJ_P0047362 protein_coding protein_coding MGP_C3HHeJ_T0017325.1 MGP_C3HHeJ_G0015100.1 mouse_genomes_project 17 12795937 12809846 + Gm28869 processed_transcript processed_transcript MGP_C3HHeJ_T0046426.1 MGP_C3HHeJ_G0023215.1 mouse_genomes_project 17 30971985 30997508 + MGP_C3HHeJ_P0046426 Pknox1 protein_coding protein_coding MGP_C3HHeJ_T0046427.1 MGP_C3HHeJ_G0023215.1 mouse_genomes_project 17 30973733 30999711 + MGP_C3HHeJ_P0046427 Pknox1 protein_coding protein_coding MGP_C3HHeJ_T0046428.1 MGP_C3HHeJ_G0023215.1 mouse_genomes_project 17 30973877 30999707 + MGP_C3HHeJ_P0046428 Pknox1 protein_coding protein_coding MGP_C3HHeJ_T0046429.1 MGP_C3HHeJ_G0023215.1 mouse_genomes_project 17 30982811 30983238 + Pknox1 protein_coding processed_transcript MGP_C3HHeJ_T0046430.1 MGP_C3HHeJ_G0023215.1 mouse_genomes_project 17 30985903 30990684 + Pknox1 protein_coding retained_intron MGP_C3HHeJ_T0046431.1 MGP_C3HHeJ_G0023215.1 mouse_genomes_project 17 30994764 30995611 + Pknox1 protein_coding retained_intron MGP_C3HHeJ_T0099098.1 MGP_C3HHeJ_G0037292.1 mouse_genomes_project 17 75185280 75185387 + Gm23649 snRNA snRNA MGP_C3HHeJ_T0047237.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35955910 35964033 - MGP_C3HHeJ_P0047237 Prr3 protein_coding protein_coding MGP_C3HHeJ_T0047238.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35958702 35963447 - MGP_C3HHeJ_P0047238 Prr3 protein_coding protein_coding MGP_C3HHeJ_T0047239.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35961680 35963369 - MGP_C3HHeJ_P0047239 Prr3 protein_coding protein_coding MGP_C3HHeJ_T0047240.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35961916 35963729 - MGP_C3HHeJ_P0047240 Prr3 protein_coding protein_coding MGP_C3HHeJ_T0047241.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35962084 35963729 - MGP_C3HHeJ_P0047241 Prr3 protein_coding protein_coding MGP_C3HHeJ_T0047242.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35962339 35963600 - MGP_C3HHeJ_P0047242 Prr3 protein_coding protein_coding MGP_C3HHeJ_T0047243.1 MGP_C3HHeJ_G0023390.1 mouse_genomes_project 17 35962450 35963220 - Prr3 protein_coding retained_intron MGP_C3HHeJ_T0048390.1 MGP_C3HHeJ_G0023804.1 mouse_genomes_project 17 87126016 87241411 + MGP_C3HHeJ_P0048390 Plekhh2 protein_coding protein_coding MGP_C3HHeJ_T0046176.1 MGP_C3HHeJ_G0023159.1 mouse_genomes_project 17 27247068 27271397 + MGP_C3HHeJ_P0046176 Def6 protein_coding protein_coding MGP_C3HHeJ_T0046177.1 MGP_C3HHeJ_G0023159.1 mouse_genomes_project 17 27247127 27252022 + Def6 protein_coding processed_transcript MGP_C3HHeJ_T0045577.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22930814 22965135 - MGP_C3HHeJ_P0045577 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045578.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22930815 22965162 - MGP_C3HHeJ_P0045578 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045579.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22936332 22965115 - MGP_C3HHeJ_P0045579 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045580.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22937966 22965119 - MGP_C3HHeJ_P0045580 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045581.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938139 22965114 - MGP_C3HHeJ_P0045581 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045582.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938185 22965131 - MGP_C3HHeJ_P0045582 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045583.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938196 22959537 - MGP_C3HHeJ_P0045583 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045584.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938246 22965096 - MGP_C3HHeJ_P0045584 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045585.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938246 22965123 - MGP_C3HHeJ_P0045585 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045586.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938265 22965114 - MGP_C3HHeJ_P0045586 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045587.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938266 22959537 - MGP_C3HHeJ_P0045587 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045588.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22938412 22965125 - MGP_C3HHeJ_P0045588 Tbc1d24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045589.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22939616 22940440 - Tbc1d24 protein_coding processed_transcript MGP_C3HHeJ_T0045590.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22940814 22965082 - MGP_C3HHeJ_P0045590 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0045591.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22948855 22965119 - Tbc1d24 protein_coding processed_transcript MGP_C3HHeJ_T0045592.1 MGP_C3HHeJ_G0023017.1 mouse_genomes_project 17 22963447 22968989 - MGP_C3HHeJ_P0045592 Tbc1d24 protein_coding protein_coding MGP_C3HHeJ_T0047129.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35633416 35639433 - MGP_C3HHeJ_P0047129 Gtf2h4 protein_coding protein_coding MGP_C3HHeJ_T0047130.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35633424 35634460 - Gtf2h4 protein_coding retained_intron MGP_C3HHeJ_T0047131.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35633425 35635539 - Gtf2h4 protein_coding retained_intron MGP_C3HHeJ_T0047132.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35633427 35639312 - MGP_C3HHeJ_P0047132 Gtf2h4 protein_coding protein_coding MGP_C3HHeJ_T0047133.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35633528 35639397 - MGP_C3HHeJ_P0047133 Gtf2h4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047134.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35636072 35639382 - Gtf2h4 protein_coding retained_intron MGP_C3HHeJ_T0047135.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35636429 35639384 - MGP_C3HHeJ_P0047135 Gtf2h4 protein_coding protein_coding MGP_C3HHeJ_T0047136.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35637030 35639211 - MGP_C3HHeJ_P0047136 Gtf2h4 protein_coding protein_coding MGP_C3HHeJ_T0047137.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35637449 35639375 - Gtf2h4 protein_coding retained_intron MGP_C3HHeJ_T0047138.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35637586 35638992 - Gtf2h4 protein_coding retained_intron MGP_C3HHeJ_T0047139.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35637736 35639253 - Gtf2h4 protein_coding processed_transcript MGP_C3HHeJ_T0047140.1 MGP_C3HHeJ_G0023376.1 mouse_genomes_project 17 35637751 35639353 - MGP_C3HHeJ_P0047140 Gtf2h4 protein_coding protein_coding MGP_C3HHeJ_T0100349.1 MGP_C3HHeJ_G0038543.1 mouse_genomes_project 17 65037573 65037690 + Gm24730 snoRNA snoRNA MGP_C3HHeJ_T0003653.1 MGP_C3HHeJ_G0003293.1 mouse_genomes_project 17 22573986 22579446 - Gm15947 antisense antisense MGP_C3HHeJ_T0046763.1 MGP_C3HHeJ_G0023293.1 mouse_genomes_project 17 33838402 33847647 + MGP_C3HHeJ_P0046763 H2-Ab1 protein_coding protein_coding MGP_C3HHeJ_T0046764.1 MGP_C3HHeJ_G0023293.1 mouse_genomes_project 17 33845393 33846326 + H2-Ab1 protein_coding retained_intron MGP_C3HHeJ_T0046765.1 MGP_C3HHeJ_G0023293.1 mouse_genomes_project 17 33846508 33847623 + H2-Ab1 protein_coding retained_intron MGP_C3HHeJ_T0045486.1 MGP_C3HHeJ_G0022984.1 mouse_genomes_project 17 22328870 22346919 - MGP_C3HHeJ_P0045486 Mmp25 protein_coding protein_coding MGP_C3HHeJ_T0046929.1 MGP_C3HHeJ_G0023325.1 mouse_genomes_project 17 34746841 34762786 + Slc44a4 protein_coding retained_intron MGP_C3HHeJ_T0046930.1 MGP_C3HHeJ_G0023325.1 mouse_genomes_project 17 34746845 34762763 + MGP_C3HHeJ_P0046930 Slc44a4 protein_coding protein_coding MGP_C3HHeJ_T0046931.1 MGP_C3HHeJ_G0023325.1 mouse_genomes_project 17 34750131 34762843 + MGP_C3HHeJ_P0046931 Slc44a4 protein_coding protein_coding MGP_C3HHeJ_T0045704.1 MGP_C3HHeJ_G0023047.1 mouse_genomes_project 17 23560318 23566004 + MGP_C3HHeJ_P0045704 Hs3st6 protein_coding protein_coding MGP_C3HHeJ_T0047881.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 54933067 54992087 + Kat2b protein_coding processed_transcript MGP_C3HHeJ_T0047882.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 54933177 55046479 + MGP_C3HHeJ_P0047882 Kat2b protein_coding protein_coding MGP_C3HHeJ_T0047883.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 54951892 55006367 + MGP_C3HHeJ_P0047883 Kat2b protein_coding protein_coding MGP_C3HHeJ_T0047884.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 55017089 55045830 + MGP_C3HHeJ_P0047884 Kat2b protein_coding protein_coding MGP_C3HHeJ_T0047885.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 55032563 55037339 + Kat2b protein_coding retained_intron MGP_C3HHeJ_T0047886.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 55032636 55037364 + Kat2b protein_coding retained_intron MGP_C3HHeJ_T0047887.1 MGP_C3HHeJ_G0023614.1 mouse_genomes_project 17 55032720 55044369 + MGP_C3HHeJ_P0047887 Kat2b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003667.1 MGP_C3HHeJ_G0003305.1 mouse_genomes_project 17 28753084 28771452 - Tbc1d22bos antisense antisense MGP_C3HHeJ_T0003668.1 MGP_C3HHeJ_G0003305.1 mouse_genomes_project 17 28762994 28771426 - Tbc1d22bos antisense antisense MGP_C3HHeJ_T0003685.1 MGP_C3HHeJ_G0003316.1 mouse_genomes_project 17 35450790 35452256 - Gm19553 antisense antisense MGP_C3HHeJ_T0099103.1 MGP_C3HHeJ_G0037297.1 mouse_genomes_project 17 87007665 87007772 + Gm24722 snRNA snRNA MGP_C3HHeJ_T0048082.1 MGP_C3HHeJ_G0023698.1 mouse_genomes_project 17 66716538 66720088 - MGP_C3HHeJ_P0048082 4930583I09Rik protein_coding protein_coding MGP_C3HHeJ_T0045723.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23708108 23754396 - MGP_C3HHeJ_P0045723 Mapk8ip3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045738.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713471 23754435 - MGP_C3HHeJ_P0045738 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045739.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713471 23754435 - MGP_C3HHeJ_P0045739 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045740.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713498 23754352 - MGP_C3HHeJ_P0045740 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045741.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713498 23754370 - MGP_C3HHeJ_P0045741 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045742.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713498 23754426 - MGP_C3HHeJ_P0045742 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045743.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713498 23754425 - MGP_C3HHeJ_P0045743 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045744.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23713499 23754387 - MGP_C3HHeJ_P0045744 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045745.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23714573 23715683 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045746.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23714764 23754418 - MGP_C3HHeJ_P0045746 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045747.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23714913 23754426 - MGP_C3HHeJ_P0045747 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045748.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23715629 23717052 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045749.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23716509 23717684 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045750.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23717783 23719048 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045751.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23718656 23719331 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045752.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23720618 23721877 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045753.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23721269 23722888 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045754.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23722924 23732745 - Mapk8ip3 protein_coding processed_transcript MGP_C3HHeJ_T0045755.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23723014 23740026 - MGP_C3HHeJ_P0045755 Mapk8ip3 protein_coding protein_coding MGP_C3HHeJ_T0045756.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23731531 23740369 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045757.1 MGP_C3HHeJ_G0023055.1 mouse_genomes_project 17 23743580 23754403 - Mapk8ip3 protein_coding retained_intron MGP_C3HHeJ_T0045149.1 MGP_C3HHeJ_G0022847.1 mouse_genomes_project 17 3824028 3830317 + MGP_C3HHeJ_P0045149 Dynlt1c protein_coding protein_coding MGP_C3HHeJ_T0017342.1 MGP_C3HHeJ_G0015110.1 mouse_genomes_project 17 33586746 33592290 - Gm20427 processed_transcript retained_intron MGP_C3HHeJ_T0047669.1 MGP_C3HHeJ_G0023555.1 mouse_genomes_project 17 47751826 47752964 - Gnmt protein_coding retained_intron MGP_C3HHeJ_T0047670.1 MGP_C3HHeJ_G0023555.1 mouse_genomes_project 17 47751826 47756080 - MGP_C3HHeJ_P0047670 Gnmt protein_coding protein_coding MGP_C3HHeJ_T0047300.1 MGP_C3HHeJ_G0023412.1 mouse_genomes_project 17 37009227 37018058 - MGP_C3HHeJ_P0047300 Trim40 protein_coding protein_coding MGP_C3HHeJ_T0047301.1 MGP_C3HHeJ_G0023412.1 mouse_genomes_project 17 37009474 37017175 - MGP_C3HHeJ_P0047301 Trim40 protein_coding protein_coding MGP_C3HHeJ_T0047302.1 MGP_C3HHeJ_G0023412.1 mouse_genomes_project 17 37010567 37018136 - Trim40 protein_coding retained_intron MGP_C3HHeJ_T0047303.1 MGP_C3HHeJ_G0023412.1 mouse_genomes_project 17 37016906 37018125 - Trim40 protein_coding processed_transcript MGP_C3HHeJ_T0006810.1 MGP_C3HHeJ_G0005603.1 mouse_genomes_project 17 6630756 6653340 - 6530411M01Rik lincRNA lincRNA MGP_C3HHeJ_T0045758.1 MGP_C3HHeJ_G0023058.1 mouse_genomes_project 17 23762150 23783361 - MGP_C3HHeJ_P0045758 Hn1l protein_coding protein_coding MGP_C3HHeJ_T0047276.1 MGP_C3HHeJ_G0023401.1 mouse_genomes_project 17 36397165 36400462 - MGP_C3HHeJ_P0047276 H2-M10.1 protein_coding protein_coding MGP_C3HHeJ_T0047277.1 MGP_C3HHeJ_G0023401.1 mouse_genomes_project 17 36397508 36400483 - MGP_C3HHeJ_P0047277 H2-M10.1 protein_coding protein_coding MGP_C3HHeJ_T0100359.1 MGP_C3HHeJ_G0038553.1 mouse_genomes_project 17 90274097 90274231 - Gm26005 snoRNA snoRNA MGP_C3HHeJ_T0046099.1 MGP_C3HHeJ_G0023141.1 mouse_genomes_project 17 26102555 26128060 - MGP_C3HHeJ_P0046099 Ip6k3 protein_coding protein_coding MGP_C3HHeJ_T0047012.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34964602 34970927 - MGP_C3HHeJ_P0047012 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047013.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34964604 34969273 - MGP_C3HHeJ_P0047013 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047014.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34964604 34970784 - MGP_C3HHeJ_P0047014 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047015.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34964606 34970671 - MGP_C3HHeJ_P0047015 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047016.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34964648 34967570 - MGP_C3HHeJ_P0047016 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047017.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34967192 34968279 - Csnk2b protein_coding retained_intron MGP_C3HHeJ_T0047018.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34967193 34971551 - MGP_C3HHeJ_P0047018 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047019.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34967492 34970528 - MGP_C3HHeJ_P0047019 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047020.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34969251 34971496 - MGP_C3HHeJ_P0047020 Csnk2b protein_coding protein_coding MGP_C3HHeJ_T0047021.1 MGP_C3HHeJ_G0023346.1 mouse_genomes_project 17 34970015 34970934 - Csnk2b protein_coding retained_intron MGP_C3HHeJ_T0047928.1 MGP_C3HHeJ_G0023635.1 mouse_genomes_project 17 57544937 57569999 + MGP_C3HHeJ_P0047928 Hdgfrp2 protein_coding protein_coding MGP_C3HHeJ_T0047929.1 MGP_C3HHeJ_G0023635.1 mouse_genomes_project 17 57544966 57570008 + MGP_C3HHeJ_P0047929 Hdgfrp2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099076.1 MGP_C3HHeJ_G0037270.1 mouse_genomes_project 17 28113983 28114155 - Gm23887 snRNA snRNA MGP_C3HHeJ_T0006904.1 MGP_C3HHeJ_G0005675.1 mouse_genomes_project 17 89609805 89610492 + Gm29168 lincRNA lincRNA MGP_C3HHeJ_T0045429.1 MGP_C3HHeJ_G0022963.1 mouse_genomes_project 17 20141646 20163463 + MGP_C3HHeJ_P0045429 Zfp229 protein_coding protein_coding MGP_C3HHeJ_T0045430.1 MGP_C3HHeJ_G0022963.1 mouse_genomes_project 17 20144456 20146858 + Zfp229 protein_coding processed_transcript MGP_C3HHeJ_T0045431.1 MGP_C3HHeJ_G0022963.1 mouse_genomes_project 17 20144489 20145694 + Zfp229 protein_coding processed_transcript MGP_C3HHeJ_T0045432.1 MGP_C3HHeJ_G0022963.1 mouse_genomes_project 17 20144500 20167370 + MGP_C3HHeJ_P0045432 Zfp229 protein_coding protein_coding MGP_C3HHeJ_T0045433.1 MGP_C3HHeJ_G0022963.1 mouse_genomes_project 17 20144500 20186681 + MGP_C3HHeJ_P0045433 Zfp229 protein_coding protein_coding MGP_C3HHeJ_T0045434.1 MGP_C3HHeJ_G0022963.1 mouse_genomes_project 17 20146688 20167371 + MGP_C3HHeJ_P0045434 Zfp229 protein_coding protein_coding MGP_C3HHeJ_T0047676.1 MGP_C3HHeJ_G0023557.1 mouse_genomes_project 17 47786485 47794535 - MGP_C3HHeJ_P0047676 Ptcra protein_coding protein_coding MGP_C3HHeJ_T0048413.1 MGP_C3HHeJ_G0023814.1 mouse_genomes_project 17 88389140 88393098 - MGP_C3HHeJ_P0048413 Six2 protein_coding protein_coding MGP_C3HHeJ_T0046932.1 MGP_C3HHeJ_G0023326.1 mouse_genomes_project 17 34763549 34768218 + MGP_C3HHeJ_P0046932 Neu1 protein_coding protein_coding MGP_C3HHeJ_T0046933.1 MGP_C3HHeJ_G0023326.1 mouse_genomes_project 17 34763610 34768250 + Neu1 protein_coding retained_intron MGP_C3HHeJ_T0046934.1 MGP_C3HHeJ_G0023326.1 mouse_genomes_project 17 34764159 34765062 + Neu1 protein_coding retained_intron MGP_C3HHeJ_T0010141.1 MGP_C3HHeJ_G0008274.1 mouse_genomes_project 17 81292021 81292122 - Gm26377 miRNA miRNA MGP_C3HHeJ_T0010126.1 MGP_C3HHeJ_G0008259.1 mouse_genomes_project 17 40033967 40034077 - Gm26429 miRNA miRNA MGP_C3HHeJ_T0046125.1 MGP_C3HHeJ_G0023148.1 mouse_genomes_project 17 26630574 26636702 - MGP_C3HHeJ_P0046125 Rps10 protein_coding protein_coding MGP_C3HHeJ_T0046126.1 MGP_C3HHeJ_G0023148.1 mouse_genomes_project 17 26630614 26634612 - MGP_C3HHeJ_P0046126 Rps10 protein_coding protein_coding MGP_C3HHeJ_T0046127.1 MGP_C3HHeJ_G0023148.1 mouse_genomes_project 17 26631179 26636738 - Rps10 protein_coding processed_transcript MGP_C3HHeJ_T0046128.1 MGP_C3HHeJ_G0023148.1 mouse_genomes_project 17 26631808 26634397 - Rps10 protein_coding retained_intron MGP_C3HHeJ_T0046129.1 MGP_C3HHeJ_G0023148.1 mouse_genomes_project 17 26632104 26636691 - Rps10 protein_coding retained_intron MGP_C3HHeJ_T0046130.1 MGP_C3HHeJ_G0023148.1 mouse_genomes_project 17 26634297 26636706 - Rps10 protein_coding processed_transcript MGP_C3HHeJ_T0100356.1 MGP_C3HHeJ_G0038550.1 mouse_genomes_project 17 84757213 84757342 - Gm22386 snoRNA snoRNA MGP_C3HHeJ_T0017327.1 MGP_C3HHeJ_G0015102.1 mouse_genomes_project 17 22968462 22981242 + BC028777 processed_transcript processed_transcript MGP_C3HHeJ_T0017328.1 MGP_C3HHeJ_G0015102.1 mouse_genomes_project 17 22972107 22981427 + BC028777 processed_transcript processed_transcript MGP_C3HHeJ_T0011324.1 MGP_C3HHeJ_G0009457.1 mouse_genomes_project 17 15724705 15724991 + Gm23837 misc_RNA misc_RNA MGP_C3HHeJ_T0101794.1 MGP_C3HHeJ_G0039759.1 mouse_genomes_project 17 18727385 18728136 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046232.1 MGP_C3HHeJ_G0023169.1 mouse_genomes_project 17 27671932 27680910 + MGP_C3HHeJ_P0046232 Lhfpl5 protein_coding protein_coding MGP_C3HHeJ_T0013109.1 MGP_C3HHeJ_G0011213.1 mouse_genomes_project 17 38097446 38100066 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045161.1 MGP_C3HHeJ_G0022854.1 mouse_genomes_project 17 4590135 4727598 + MGP_C3HHeJ_P0045161 Rps6ka2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046458.1 MGP_C3HHeJ_G0023222.1 mouse_genomes_project 17 31556442 31611015 - MGP_C3HHeJ_P0046458 Notch3 protein_coding protein_coding MGP_C3HHeJ_T0101368.1 MGP_C3HHeJ_G0039432.1 mouse_genomes_project 17 31490881 31505854 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101369.1 MGP_C3HHeJ_G0039432.1 mouse_genomes_project 17 31491300 31533760 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101370.1 MGP_C3HHeJ_G0039432.1 mouse_genomes_project 17 31493605 31542229 - transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0010088.1 MGP_C3HHeJ_G0008221.1 mouse_genomes_project 17 15774510 15774578 + Mir125a miRNA miRNA MGP_C3HHeJ_T0047420.1 MGP_C3HHeJ_G0023480.1 mouse_genomes_project 17 40862783 40883344 - MGP_C3HHeJ_P0047420 protein_coding protein_coding MGP_C3HHeJ_T0011328.1 MGP_C3HHeJ_G0009461.1 mouse_genomes_project 17 32464296 32464571 - Gm25667 misc_RNA misc_RNA MGP_C3HHeJ_T0045453.1 MGP_C3HHeJ_G0022973.1 mouse_genomes_project 17 20991802 21014203 + Zfp946 protein_coding processed_transcript MGP_C3HHeJ_T0045454.1 MGP_C3HHeJ_G0022973.1 mouse_genomes_project 17 20991839 21026571 + MGP_C3HHeJ_P0045454 Zfp946 protein_coding protein_coding MGP_C3HHeJ_T0045455.1 MGP_C3HHeJ_G0022973.1 mouse_genomes_project 17 20991848 21026571 + MGP_C3HHeJ_P0045455 Zfp946 protein_coding protein_coding MGP_C3HHeJ_T0045456.1 MGP_C3HHeJ_G0022973.1 mouse_genomes_project 17 21017905 21025720 + MGP_C3HHeJ_P0045456 Zfp946 protein_coding protein_coding MGP_C3HHeJ_T0006866.1 MGP_C3HHeJ_G0005649.1 mouse_genomes_project 17 37254405 37367116 - lincRNA lincRNA MGP_C3HHeJ_T0047681.1 MGP_C3HHeJ_G0023561.1 mouse_genomes_project 17 47933406 47934596 - MGP_C3HHeJ_P0047681 A330017A19Rik protein_coding protein_coding MGP_C3HHeJ_T0101784.1 MGP_C3HHeJ_G0039749.1 mouse_genomes_project 17 17164978 17166293 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0013091.1 MGP_C3HHeJ_G0011195.1 mouse_genomes_project 17 34271040 34271447 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045803.1 MGP_C3HHeJ_G0023069.1 mouse_genomes_project 17 24071288 24077820 - MGP_C3HHeJ_P0045803 Gnptg protein_coding protein_coding MGP_C3HHeJ_T0045804.1 MGP_C3HHeJ_G0023069.1 mouse_genomes_project 17 24072274 24077812 - MGP_C3HHeJ_P0045804 Gnptg protein_coding protein_coding MGP_C3HHeJ_T0047246.1 MGP_C3HHeJ_G0023392.1 mouse_genomes_project 17 35994953 36002714 - MGP_C3HHeJ_P0047246 H2-T24 protein_coding protein_coding MGP_C3HHeJ_T0047247.1 MGP_C3HHeJ_G0023392.1 mouse_genomes_project 17 35995527 36002679 - MGP_C3HHeJ_P0047247 H2-T24 protein_coding protein_coding MGP_C3HHeJ_T0045130.1 MGP_C3HHeJ_G0022842.1 mouse_genomes_project 17 3239659 3277056 - MGP_C3HHeJ_P0045130 Serac1 protein_coding protein_coding MGP_C3HHeJ_T0045131.1 MGP_C3HHeJ_G0022842.1 mouse_genomes_project 17 3241367 3247459 - Serac1 protein_coding processed_transcript MGP_C3HHeJ_T0045132.1 MGP_C3HHeJ_G0022842.1 mouse_genomes_project 17 3241529 3277042 - MGP_C3HHeJ_P0045132 Serac1 protein_coding protein_coding MGP_C3HHeJ_T0045133.1 MGP_C3HHeJ_G0022842.1 mouse_genomes_project 17 3247430 3248792 - Serac1 protein_coding retained_intron MGP_C3HHeJ_T0045134.1 MGP_C3HHeJ_G0022842.1 mouse_genomes_project 17 3262357 3277048 - Serac1 protein_coding processed_transcript MGP_C3HHeJ_T0003706.1 MGP_C3HHeJ_G0003332.1 mouse_genomes_project 17 51138110 51139354 - Gm16554 antisense antisense MGP_C3HHeJ_T0048041.1 MGP_C3HHeJ_G0023682.1 mouse_genomes_project 17 58779407 58803383 - MGP_C3HHeJ_P0048041 C3 protein_coding protein_coding MGP_C3HHeJ_T0048042.1 MGP_C3HHeJ_G0023682.1 mouse_genomes_project 17 58779444 58798087 - MGP_C3HHeJ_P0048042 C3 protein_coding protein_coding MGP_C3HHeJ_T0048043.1 MGP_C3HHeJ_G0023682.1 mouse_genomes_project 17 58781654 58803250 - MGP_C3HHeJ_P0048043 C3 protein_coding protein_coding MGP_C3HHeJ_T0048044.1 MGP_C3HHeJ_G0023682.1 mouse_genomes_project 17 58791066 58795246 - C3 protein_coding processed_transcript MGP_C3HHeJ_T0047375.1 MGP_C3HHeJ_G0023443.1 mouse_genomes_project 17 37780746 37784417 - Olfr112 protein_coding processed_transcript MGP_C3HHeJ_T0047376.1 MGP_C3HHeJ_G0023443.1 mouse_genomes_project 17 37780928 37786905 - MGP_C3HHeJ_P0047376 Olfr112 protein_coding protein_coding MGP_C3HHeJ_T0047214.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35889237 35895124 - MGP_C3HHeJ_P0047214 Mrps18b protein_coding protein_coding MGP_C3HHeJ_T0047215.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35889237 35895124 - MGP_C3HHeJ_P0047215 Mrps18b protein_coding protein_coding MGP_C3HHeJ_T0047216.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35889244 35895065 - MGP_C3HHeJ_P0047216 Mrps18b protein_coding protein_coding MGP_C3HHeJ_T0047217.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35889361 35891475 - Mrps18b protein_coding retained_intron MGP_C3HHeJ_T0047218.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35889709 35895072 - MGP_C3HHeJ_P0047218 Mrps18b protein_coding protein_coding MGP_C3HHeJ_T0047219.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35890299 35895058 - MGP_C3HHeJ_P0047219 Mrps18b protein_coding protein_coding MGP_C3HHeJ_T0047220.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35892699 35895112 - Mrps18b protein_coding retained_intron MGP_C3HHeJ_T0047221.1 MGP_C3HHeJ_G0023387.1 mouse_genomes_project 17 35893471 35894938 - Mrps18b protein_coding processed_transcript MGP_C3HHeJ_T0101364.1 MGP_C3HHeJ_G0039431.1 mouse_genomes_project 17 3532961 3575231 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101365.1 MGP_C3HHeJ_G0039431.1 mouse_genomes_project 17 3532961 3575449 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101366.1 MGP_C3HHeJ_G0039431.1 mouse_genomes_project 17 3554356 3579064 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101367.1 MGP_C3HHeJ_G0039431.1 mouse_genomes_project 17 3555969 3576089 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0045401.1 MGP_C3HHeJ_G0022944.1 mouse_genomes_project 17 19230848 19231784 - MGP_C3HHeJ_P0045401 protein_coding protein_coding MGP_C3HHeJ_T0010104.1 MGP_C3HHeJ_G0008237.1 mouse_genomes_project 17 26318456 26318532 + Mir7216 miRNA miRNA MGP_C3HHeJ_T0101824.1 MGP_C3HHeJ_G0039789.1 mouse_genomes_project 17 36095456 36096039 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0011334.1 MGP_C3HHeJ_G0009467.1 mouse_genomes_project 17 48039494 48039788 - Gm23657 misc_RNA misc_RNA MGP_C3HHeJ_T0047327.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37134121 37144484 + MGP_C3HHeJ_P0047327 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047328.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135380 37143294 + MGP_C3HHeJ_P0047328 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047329.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135423 37144484 + MGP_C3HHeJ_P0047329 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047330.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135452 37139929 + MGP_C3HHeJ_P0047330 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047331.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135467 37136714 + Zfp57 protein_coding retained_intron MGP_C3HHeJ_T0047332.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135475 37136592 + Zfp57 protein_coding retained_intron MGP_C3HHeJ_T0047333.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135494 37143675 + MGP_C3HHeJ_P0047333 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047334.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135510 37139914 + MGP_C3HHeJ_P0047334 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047335.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135568 37143598 + MGP_C3HHeJ_P0047335 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047336.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37135936 37144487 + MGP_C3HHeJ_P0047336 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047337.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37136564 37144484 + MGP_C3HHeJ_P0047337 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047338.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37137421 37143567 + MGP_C3HHeJ_P0047338 Zfp57 protein_coding protein_coding MGP_C3HHeJ_T0047339.1 MGP_C3HHeJ_G0023420.1 mouse_genomes_project 17 37137502 37140096 + Zfp57 protein_coding retained_intron MGP_C3HHeJ_T0010124.1 MGP_C3HHeJ_G0008257.1 mouse_genomes_project 17 35896623 35896704 + Mir1894 miRNA miRNA MGP_C3HHeJ_T0045106.1 MGP_C3HHeJ_G0022835.1 mouse_genomes_project 17 2257075 2259640 - MGP_C3HHeJ_P0045106 protein_coding protein_coding MGP_C3HHeJ_T0047832.1 MGP_C3HHeJ_G0023600.1 mouse_genomes_project 17 49627888 49642608 + MGP_C3HHeJ_P0047832 Unc5cl protein_coding protein_coding MGP_C3HHeJ_T0047833.1 MGP_C3HHeJ_G0023600.1 mouse_genomes_project 17 49635314 49642602 + MGP_C3HHeJ_P0047833 Unc5cl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047834.1 MGP_C3HHeJ_G0023600.1 mouse_genomes_project 17 49635339 49723919 + MGP_C3HHeJ_P0047834 Unc5cl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047835.1 MGP_C3HHeJ_G0023600.1 mouse_genomes_project 17 49635345 49638968 + MGP_C3HHeJ_P0047835 Unc5cl protein_coding protein_coding MGP_C3HHeJ_T0047836.1 MGP_C3HHeJ_G0023600.1 mouse_genomes_project 17 49635363 49642600 + MGP_C3HHeJ_P0047836 Unc5cl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047837.1 MGP_C3HHeJ_G0023600.1 mouse_genomes_project 17 49635383 49723812 + MGP_C3HHeJ_P0047837 Unc5cl protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101795.1 MGP_C3HHeJ_G0039760.1 mouse_genomes_project 17 18749296 18750148 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045311.1 MGP_C3HHeJ_G0022899.1 mouse_genomes_project 17 13107310 13115928 - MGP_C3HHeJ_P0045311 Dll1 protein_coding protein_coding MGP_C3HHeJ_T0045312.1 MGP_C3HHeJ_G0022899.1 mouse_genomes_project 17 13107481 13108347 - Dll1 protein_coding retained_intron MGP_C3HHeJ_T0045313.1 MGP_C3HHeJ_G0022899.1 mouse_genomes_project 17 13110214 13111783 - Dll1 protein_coding processed_transcript MGP_C3HHeJ_T0045314.1 MGP_C3HHeJ_G0022899.1 mouse_genomes_project 17 13110567 13114024 - Dll1 protein_coding processed_transcript MGP_C3HHeJ_T0045315.1 MGP_C3HHeJ_G0022899.1 mouse_genomes_project 17 13111575 13115052 - Dll1 protein_coding retained_intron MGP_C3HHeJ_T0045316.1 MGP_C3HHeJ_G0022899.1 mouse_genomes_project 17 13114745 13118154 - Dll1 protein_coding processed_transcript MGP_C3HHeJ_T0048327.1 MGP_C3HHeJ_G0023773.1 mouse_genomes_project 17 81781708 81802902 - MGP_C3HHeJ_P0048327 Cdc42ep3 protein_coding protein_coding MGP_C3HHeJ_T0099090.1 MGP_C3HHeJ_G0037284.1 mouse_genomes_project 17 50508636 50508797 + Gm22978 snRNA snRNA MGP_C3HHeJ_T0013124.1 MGP_C3HHeJ_G0011228.1 mouse_genomes_project 17 54708593 54709187 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045135.1 MGP_C3HHeJ_G0022843.1 mouse_genomes_project 17 3277100 3283784 + MGP_C3HHeJ_P0045135 Gtf2h5 protein_coding protein_coding MGP_C3HHeJ_T0045136.1 MGP_C3HHeJ_G0022843.1 mouse_genomes_project 17 3277151 3279653 + Gtf2h5 protein_coding retained_intron MGP_C3HHeJ_T0045137.1 MGP_C3HHeJ_G0022843.1 mouse_genomes_project 17 3277244 3282397 + MGP_C3HHeJ_P0045137 Gtf2h5 protein_coding protein_coding MGP_C3HHeJ_T0045684.1 MGP_C3HHeJ_G0023042.1 mouse_genomes_project 17 23519713 23521930 - MGP_C3HHeJ_P0045684 Rnf151 protein_coding protein_coding MGP_C3HHeJ_T0101792.1 MGP_C3HHeJ_G0039757.1 mouse_genomes_project 17 18390414 18448822 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047413.1 MGP_C3HHeJ_G0023473.1 mouse_genomes_project 17 39533121 39533829 - MGP_C3HHeJ_P0047413 Gm21903 protein_coding protein_coding MGP_C3HHeJ_T0046743.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33763215 33773354 + MGP_C3HHeJ_P0046743 Tap1 protein_coding protein_coding MGP_C3HHeJ_T0046744.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33763390 33768423 + Tap1 protein_coding retained_intron MGP_C3HHeJ_T0046745.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33763396 33773354 + Tap1 protein_coding retained_intron MGP_C3HHeJ_T0046746.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33763464 33773348 + MGP_C3HHeJ_P0046746 Tap1 protein_coding protein_coding MGP_C3HHeJ_T0046747.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33766036 33773349 + Tap1 protein_coding retained_intron MGP_C3HHeJ_T0046748.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33766896 33769697 + MGP_C3HHeJ_P0046748 Tap1 protein_coding protein_coding MGP_C3HHeJ_T0046749.1 MGP_C3HHeJ_G0023288.1 mouse_genomes_project 17 33769184 33772716 + Tap1 protein_coding retained_intron MGP_C3HHeJ_T0045387.1 MGP_C3HHeJ_G0022930.1 mouse_genomes_project 17 18491233 18492202 - MGP_C3HHeJ_P0045387 protein_coding protein_coding MGP_C3HHeJ_T0046987.1 MGP_C3HHeJ_G0023338.1 mouse_genomes_project 17 34903829 34907311 - MGP_C3HHeJ_P0046987 G6b protein_coding protein_coding MGP_C3HHeJ_T0046988.1 MGP_C3HHeJ_G0023338.1 mouse_genomes_project 17 34905464 34907297 - MGP_C3HHeJ_P0046988 G6b protein_coding protein_coding MGP_C3HHeJ_T0048086.1 MGP_C3HHeJ_G0023701.1 mouse_genomes_project 17 67552891 67557506 - MGP_C3HHeJ_P0048086 Txndc2 protein_coding protein_coding MGP_C3HHeJ_T0045282.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368555 11429320 + MGP_C3HHeJ_P0045282 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045283.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368557 11536753 + MGP_C3HHeJ_P0045283 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045284.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368557 11429235 + MGP_C3HHeJ_P0045284 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045285.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368564 11537109 + MGP_C3HHeJ_P0045285 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045286.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368615 11535091 + MGP_C3HHeJ_P0045286 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045287.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368615 11527282 + MGP_C3HHeJ_P0045287 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045288.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11368655 11536650 + MGP_C3HHeJ_P0045288 Mllt4 protein_coding protein_coding MGP_C3HHeJ_T0045289.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11369625 11466988 + Mllt4 protein_coding processed_transcript MGP_C3HHeJ_T0045290.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11463724 11468349 + Mllt4 protein_coding retained_intron MGP_C3HHeJ_T0045291.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11464495 11468036 + Mllt4 protein_coding processed_transcript MGP_C3HHeJ_T0045292.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11489138 11504079 + Mllt4 protein_coding processed_transcript MGP_C3HHeJ_T0045293.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11496121 11504444 + Mllt4 protein_coding retained_intron MGP_C3HHeJ_T0045294.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11529620 11535328 + Mllt4 protein_coding retained_intron MGP_C3HHeJ_T0045295.1 MGP_C3HHeJ_G0022891.1 mouse_genomes_project 17 11529782 11536754 + Mllt4 protein_coding retained_intron MGP_C3HHeJ_T0047636.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47505213 47505713 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047637.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47505246 47552765 - MGP_C3HHeJ_P0047637 Cul9 protein_coding protein_coding MGP_C3HHeJ_T0047638.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47505251 47524702 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047639.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47505257 47552678 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047640.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47506581 47529792 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047641.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47522433 47526677 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047642.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47523496 47524608 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047643.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47523496 47529150 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047644.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47532397 47544232 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047645.1 MGP_C3HHeJ_G0023544.1 mouse_genomes_project 17 47533667 47544492 - Cul9 protein_coding retained_intron MGP_C3HHeJ_T0047781.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48986529 49046307 - MGP_C3HHeJ_P0047781 Foxp4 protein_coding protein_coding MGP_C3HHeJ_T0047782.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48987160 49046097 - MGP_C3HHeJ_P0047782 Foxp4 protein_coding protein_coding MGP_C3HHeJ_T0047783.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48987160 49046062 - MGP_C3HHeJ_P0047783 Foxp4 protein_coding protein_coding MGP_C3HHeJ_T0047784.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48987164 49046138 - MGP_C3HHeJ_P0047784 Foxp4 protein_coding protein_coding MGP_C3HHeJ_T0047785.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48997500 49009059 - Foxp4 protein_coding processed_transcript MGP_C3HHeJ_T0047786.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48997695 48998169 - Foxp4 protein_coding retained_intron MGP_C3HHeJ_T0047787.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 48999558 49008765 - Foxp4 protein_coding retained_intron MGP_C3HHeJ_T0047788.1 MGP_C3HHeJ_G0023584.1 mouse_genomes_project 17 49008511 49046088 - Foxp4 protein_coding retained_intron MGP_C3HHeJ_T0046019.1 MGP_C3HHeJ_G0023120.1 mouse_genomes_project 17 25106174 25139659 - MGP_C3HHeJ_P0046019 Fam234a protein_coding protein_coding MGP_C3HHeJ_T0046020.1 MGP_C3HHeJ_G0023120.1 mouse_genomes_project 17 25107065 25139578 - MGP_C3HHeJ_P0046020 Fam234a protein_coding protein_coding MGP_C3HHeJ_T0046021.1 MGP_C3HHeJ_G0023120.1 mouse_genomes_project 17 25107896 25110627 - MGP_C3HHeJ_P0046021 Fam234a protein_coding protein_coding MGP_C3HHeJ_T0046022.1 MGP_C3HHeJ_G0023120.1 mouse_genomes_project 17 25109599 25111349 - Fam234a protein_coding retained_intron MGP_C3HHeJ_T0046023.1 MGP_C3HHeJ_G0023120.1 mouse_genomes_project 17 25112674 25114977 - MGP_C3HHeJ_P0046023 Fam234a protein_coding protein_coding MGP_C3HHeJ_T0046989.1 MGP_C3HHeJ_G0023339.1 mouse_genomes_project 17 34906520 34910755 + MGP_C3HHeJ_P0046989 Ly6g6c protein_coding protein_coding MGP_C3HHeJ_T0046990.1 MGP_C3HHeJ_G0023339.1 mouse_genomes_project 17 34908451 34911172 + MGP_C3HHeJ_P0046990 Ly6g6c protein_coding protein_coding MGP_C3HHeJ_T0046991.1 MGP_C3HHeJ_G0023339.1 mouse_genomes_project 17 34908516 34910664 + MGP_C3HHeJ_P0046991 Ly6g6c protein_coding protein_coding MGP_C3HHeJ_T0003718.1 MGP_C3HHeJ_G0003342.1 mouse_genomes_project 17 89022202 89024220 - 2010106C02Rik antisense antisense MGP_C3HHeJ_T0100330.1 MGP_C3HHeJ_G0038524.1 mouse_genomes_project 17 9859330 9859470 + Gm24794 snoRNA snoRNA MGP_C3HHeJ_T0101839.1 MGP_C3HHeJ_G0039804.1 mouse_genomes_project 17 36685650 36689004 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048251.1 MGP_C3HHeJ_G0023747.1 mouse_genomes_project 17 76466656 76566294 - MGP_C3HHeJ_P0048251 Memo1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045825.1 MGP_C3HHeJ_G0023073.1 mouse_genomes_project 17 24143333 24145101 + MGP_C3HHeJ_P0045825 Prss34 protein_coding protein_coding MGP_C3HHeJ_T0006853.1 MGP_C3HHeJ_G0005638.1 mouse_genomes_project 17 33585690 33585795 - Gm26940 lincRNA lincRNA MGP_C3HHeJ_T0048016.1 MGP_C3HHeJ_G0023669.1 mouse_genomes_project 17 58563787 58565760 + MGP_C3HHeJ_P0048016 Alkbh7 protein_coding protein_coding MGP_C3HHeJ_T0048017.1 MGP_C3HHeJ_G0023669.1 mouse_genomes_project 17 58563791 58565771 + MGP_C3HHeJ_P0048017 Alkbh7 protein_coding protein_coding MGP_C3HHeJ_T0048018.1 MGP_C3HHeJ_G0023669.1 mouse_genomes_project 17 58564928 58565586 + Alkbh7 protein_coding retained_intron MGP_C3HHeJ_T0097875.1 MGP_C3HHeJ_G0036087.1 mouse_genomes_project 17 37829056 37830021 - pseudogene pseudogene MGP_C3HHeJ_T0013065.1 MGP_C3HHeJ_G0011169.1 mouse_genomes_project 17 6818377 6819364 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047446.1 MGP_C3HHeJ_G0023498.1 mouse_genomes_project 17 44086290 44143533 + MGP_C3HHeJ_P0047446 Adgrf1 protein_coding protein_coding MGP_C3HHeJ_T0006891.1 MGP_C3HHeJ_G0005664.1 mouse_genomes_project 17 71487214 71491445 + C030034I22Rik lincRNA lincRNA MGP_C3HHeJ_T0006892.1 MGP_C3HHeJ_G0005664.1 mouse_genomes_project 17 71487273 71488744 + C030034I22Rik lincRNA lincRNA MGP_C3HHeJ_T0003712.1 MGP_C3HHeJ_G0003336.1 mouse_genomes_project 17 66630677 66635924 - Gm17133 antisense antisense MGP_C3HHeJ_T0047374.1 MGP_C3HHeJ_G0023442.1 mouse_genomes_project 17 37737015 37739270 + MGP_C3HHeJ_P0047374 Olfr110 protein_coding protein_coding MGP_C3HHeJ_T0045162.1 MGP_C3HHeJ_G0022855.1 mouse_genomes_project 17 5143017 5210804 - MGP_C3HHeJ_P0045162 Fndc1 protein_coding protein_coding MGP_C3HHeJ_T0045163.1 MGP_C3HHeJ_G0022855.1 mouse_genomes_project 17 5152199 5166472 - Fndc1 protein_coding processed_transcript MGP_C3HHeJ_T0045164.1 MGP_C3HHeJ_G0022855.1 mouse_genomes_project 17 5166754 5172999 - Fndc1 protein_coding retained_intron MGP_C3HHeJ_T0045165.1 MGP_C3HHeJ_G0022855.1 mouse_genomes_project 17 5187820 5232741 - MGP_C3HHeJ_P0045165 Fndc1 protein_coding protein_coding MGP_C3HHeJ_T0045166.1 MGP_C3HHeJ_G0022855.1 mouse_genomes_project 17 5206696 5232741 - MGP_C3HHeJ_P0045166 Fndc1 protein_coding protein_coding MGP_C3HHeJ_T0006884.1 MGP_C3HHeJ_G0005660.1 mouse_genomes_project 17 57416920 57421525 - Gm16712 lincRNA lincRNA MGP_C3HHeJ_T0013072.1 MGP_C3HHeJ_G0011176.1 mouse_genomes_project 17 13314645 13314903 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045551.1 MGP_C3HHeJ_G0023009.1 mouse_genomes_project 17 22735482 22740091 - MGP_C3HHeJ_P0045551 Prss22 protein_coding protein_coding MGP_C3HHeJ_T0047268.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36327139 36337013 - MGP_C3HHeJ_P0047268 Trim39 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047269.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36327139 36340265 - MGP_C3HHeJ_P0047269 Trim39 protein_coding protein_coding MGP_C3HHeJ_T0047270.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36327139 36339828 - MGP_C3HHeJ_P0047270 Trim39 protein_coding protein_coding MGP_C3HHeJ_T0047271.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36327376 36337481 - MGP_C3HHeJ_P0047271 Trim39 protein_coding protein_coding MGP_C3HHeJ_T0047272.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36329798 36336956 - Trim39 protein_coding processed_transcript MGP_C3HHeJ_T0047273.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36330871 36339644 - Trim39 protein_coding processed_transcript MGP_C3HHeJ_T0047274.1 MGP_C3HHeJ_G0023399.1 mouse_genomes_project 17 36330873 36340508 - Trim39 protein_coding retained_intron MGP_C3HHeJ_T0045527.1 MGP_C3HHeJ_G0022998.1 mouse_genomes_project 17 22545091 22549389 - MGP_C3HHeJ_P0045527 Tceb2 protein_coding protein_coding MGP_C3HHeJ_T0045894.1 MGP_C3HHeJ_G0023095.1 mouse_genomes_project 17 24685702 24690805 + MGP_C3HHeJ_P0045894 Wdr24 protein_coding protein_coding MGP_C3HHeJ_T0045895.1 MGP_C3HHeJ_G0023095.1 mouse_genomes_project 17 24685724 24690796 + Wdr24 protein_coding retained_intron MGP_C3HHeJ_T0045896.1 MGP_C3HHeJ_G0023095.1 mouse_genomes_project 17 24686605 24687747 + Wdr24 protein_coding processed_transcript MGP_C3HHeJ_T0045897.1 MGP_C3HHeJ_G0023095.1 mouse_genomes_project 17 24686737 24688420 + Wdr24 protein_coding retained_intron MGP_C3HHeJ_T0045572.1 MGP_C3HHeJ_G0023016.1 mouse_genomes_project 17 22913765 22916842 - Atp6v0c protein_coding processed_transcript MGP_C3HHeJ_T0045573.1 MGP_C3HHeJ_G0023016.1 mouse_genomes_project 17 22914052 22919564 - MGP_C3HHeJ_P0045573 Atp6v0c protein_coding protein_coding MGP_C3HHeJ_T0045574.1 MGP_C3HHeJ_G0023016.1 mouse_genomes_project 17 22914319 22919535 - MGP_C3HHeJ_P0045574 Atp6v0c protein_coding protein_coding MGP_C3HHeJ_T0045575.1 MGP_C3HHeJ_G0023016.1 mouse_genomes_project 17 22914437 22918953 - Atp6v0c protein_coding processed_transcript MGP_C3HHeJ_T0045576.1 MGP_C3HHeJ_G0023016.1 mouse_genomes_project 17 22914441 22919589 - MGP_C3HHeJ_P0045576 Atp6v0c protein_coding protein_coding MGP_C3HHeJ_T0006865.1 MGP_C3HHeJ_G0005648.1 mouse_genomes_project 17 36316825 36321956 + Gm20546 lincRNA lincRNA MGP_C3HHeJ_T0013133.1 MGP_C3HHeJ_G0011237.1 mouse_genomes_project 17 55263158 55263490 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046498.1 MGP_C3HHeJ_G0023231.1 mouse_genomes_project 17 31958310 31981945 + MGP_C3HHeJ_P0046498 Cyp4f17 protein_coding protein_coding MGP_C3HHeJ_T0011327.1 MGP_C3HHeJ_G0009460.1 mouse_genomes_project 17 31438258 31438529 + Gm25883 misc_RNA misc_RNA MGP_C3HHeJ_T0006862.1 MGP_C3HHeJ_G0005647.1 mouse_genomes_project 17 36175558 36221948 + lincRNA lincRNA MGP_C3HHeJ_T0006863.1 MGP_C3HHeJ_G0005647.1 mouse_genomes_project 17 36175558 36221949 + lincRNA lincRNA MGP_C3HHeJ_T0006864.1 MGP_C3HHeJ_G0005647.1 mouse_genomes_project 17 36215119 36222750 + lincRNA lincRNA MGP_C3HHeJ_T0046069.1 MGP_C3HHeJ_G0023133.1 mouse_genomes_project 17 25872109 25876873 + MGP_C3HHeJ_P0046069 Phf1 protein_coding protein_coding MGP_C3HHeJ_T0101797.1 MGP_C3HHeJ_G0039762.1 mouse_genomes_project 17 19275144 19276083 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045510.1 MGP_C3HHeJ_G0022994.1 mouse_genomes_project 17 22442308 22446949 - MGP_C3HHeJ_P0045510 Kremen2 protein_coding protein_coding MGP_C3HHeJ_T0013157.1 MGP_C3HHeJ_G0011261.1 mouse_genomes_project 17 88287860 88288200 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047389.1 MGP_C3HHeJ_G0023456.1 mouse_genomes_project 17 38075861 38076983 + MGP_C3HHeJ_P0047389 Olfr124 protein_coding protein_coding MGP_C3HHeJ_T0048045.1 MGP_C3HHeJ_G0023683.1 mouse_genomes_project 17 58810102 58822728 - MGP_C3HHeJ_P0048045 Gpr108 protein_coding protein_coding MGP_C3HHeJ_T0047919.1 MGP_C3HHeJ_G0023632.1 mouse_genomes_project 17 57481783 57501668 - MGP_C3HHeJ_P0047919 Sh3gl1 protein_coding protein_coding MGP_C3HHeJ_T0046269.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28072091 28087383 + MGP_C3HHeJ_P0046269 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0046270.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28072577 28092798 + MGP_C3HHeJ_P0046270 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0046271.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28072607 28091192 + MGP_C3HHeJ_P0046271 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0046272.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28072644 28090355 + Kctd20 protein_coding processed_transcript MGP_C3HHeJ_T0046273.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28072740 28091192 + MGP_C3HHeJ_P0046273 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0046274.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28072829 28088342 + MGP_C3HHeJ_P0046274 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0046275.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28073357 28091200 + MGP_C3HHeJ_P0046275 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0046276.1 MGP_C3HHeJ_G0023178.1 mouse_genomes_project 17 28073357 28091198 + MGP_C3HHeJ_P0046276 Kctd20 protein_coding protein_coding MGP_C3HHeJ_T0048104.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67905776 68022416 - MGP_C3HHeJ_P0048104 Ankrd12 protein_coding protein_coding MGP_C3HHeJ_T0048105.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67906288 67910670 - Ankrd12 protein_coding processed_transcript MGP_C3HHeJ_T0048106.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67914396 67922243 - Ankrd12 protein_coding processed_transcript MGP_C3HHeJ_T0048107.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67926333 68022392 - MGP_C3HHeJ_P0048107 Ankrd12 protein_coding protein_coding MGP_C3HHeJ_T0048108.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67961400 68022414 - Ankrd12 protein_coding retained_intron MGP_C3HHeJ_T0048109.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67978281 68022459 - Ankrd12 protein_coding retained_intron MGP_C3HHeJ_T0048110.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67978622 68022409 - Ankrd12 protein_coding retained_intron MGP_C3HHeJ_T0048111.1 MGP_C3HHeJ_G0023706.1 mouse_genomes_project 17 67992965 67993820 - Ankrd12 protein_coding processed_transcript MGP_C3HHeJ_T0100332.1 MGP_C3HHeJ_G0038526.1 mouse_genomes_project 17 10504168 10504296 + Snora20 snoRNA snoRNA MGP_C3HHeJ_T0013123.1 MGP_C3HHeJ_G0011227.1 mouse_genomes_project 17 49129490 49129684 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046290.1 MGP_C3HHeJ_G0023180.1 mouse_genomes_project 17 28162751 28173174 + protein_coding retained_intron MGP_C3HHeJ_T0046291.1 MGP_C3HHeJ_G0023180.1 mouse_genomes_project 17 28162751 28174299 + MGP_C3HHeJ_P0046291 protein_coding protein_coding MGP_C3HHeJ_T0046292.1 MGP_C3HHeJ_G0023180.1 mouse_genomes_project 17 28167413 28171171 + protein_coding retained_intron MGP_C3HHeJ_T0046250.1 MGP_C3HHeJ_G0023173.1 mouse_genomes_project 17 27880078 27889045 + MGP_C3HHeJ_P0046250 Mapk13 protein_coding protein_coding MGP_C3HHeJ_T0046251.1 MGP_C3HHeJ_G0023173.1 mouse_genomes_project 17 27880107 27888566 + Mapk13 protein_coding retained_intron MGP_C3HHeJ_T0046252.1 MGP_C3HHeJ_G0023173.1 mouse_genomes_project 17 27880120 27888893 + MGP_C3HHeJ_P0046252 Mapk13 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046253.1 MGP_C3HHeJ_G0023173.1 mouse_genomes_project 17 27880143 27887973 + Mapk13 protein_coding retained_intron MGP_C3HHeJ_T0013126.1 MGP_C3HHeJ_G0011230.1 mouse_genomes_project 17 54971903 54972386 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048365.1 MGP_C3HHeJ_G0023794.1 mouse_genomes_project 17 83949148 83949309 + MGP_C3HHeJ_P0048365 Gm11096 protein_coding protein_coding MGP_C3HHeJ_T0045826.1 MGP_C3HHeJ_G0023074.1 mouse_genomes_project 17 24152456 24155693 + MGP_C3HHeJ_P0045826 Prss28 protein_coding protein_coding MGP_C3HHeJ_T0046838.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34325938 34336358 - MGP_C3HHeJ_P0046838 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046839.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34325939 34336300 - MGP_C3HHeJ_P0046839 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046840.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34325940 34336071 - MGP_C3HHeJ_P0046840 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046841.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34326505 34337774 - MGP_C3HHeJ_P0046841 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046842.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34326505 34338288 - MGP_C3HHeJ_P0046842 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046843.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34326505 34337734 - MGP_C3HHeJ_P0046843 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046844.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34326590 34335851 - MGP_C3HHeJ_P0046844 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046845.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34332128 34338759 - MGP_C3HHeJ_P0046845 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046846.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34332324 34336349 - MGP_C3HHeJ_P0046846 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0046847.1 MGP_C3HHeJ_G0023309.1 mouse_genomes_project 17 34335411 34336073 - MGP_C3HHeJ_P0046847 Ppt2 protein_coding protein_coding MGP_C3HHeJ_T0017320.1 MGP_C3HHeJ_G0015098.1 mouse_genomes_project 17 8342208 8365542 + Gm16169 processed_transcript antisense MGP_C3HHeJ_T0017321.1 MGP_C3HHeJ_G0015098.1 mouse_genomes_project 17 8342213 8350943 + Gm16169 processed_transcript retained_intron MGP_C3HHeJ_T0048448.1 MGP_C3HHeJ_G0023827.1 mouse_genomes_project 17 90199707 90243903 - MGP_C3HHeJ_P0048448 1700011E24Rik protein_coding protein_coding MGP_C3HHeJ_T0048449.1 MGP_C3HHeJ_G0023827.1 mouse_genomes_project 17 90199712 90243849 - MGP_C3HHeJ_P0048449 1700011E24Rik protein_coding protein_coding MGP_C3HHeJ_T0048450.1 MGP_C3HHeJ_G0023827.1 mouse_genomes_project 17 90223554 90243870 - MGP_C3HHeJ_P0048450 1700011E24Rik protein_coding protein_coding MGP_C3HHeJ_T0048451.1 MGP_C3HHeJ_G0023827.1 mouse_genomes_project 17 90229704 90243797 - 1700011E24Rik protein_coding processed_transcript MGP_C3HHeJ_T0048452.1 MGP_C3HHeJ_G0023827.1 mouse_genomes_project 17 90229714 90243797 - 1700011E24Rik protein_coding processed_transcript MGP_C3HHeJ_T0003656.1 MGP_C3HHeJ_G0003295.1 mouse_genomes_project 17 23523407 23523841 - Snhg9 antisense antisense MGP_C3HHeJ_T0047466.1 MGP_C3HHeJ_G0023506.1 mouse_genomes_project 17 44654872 44908628 + MGP_C3HHeJ_P0047466 Rcan2 protein_coding protein_coding MGP_C3HHeJ_T0047467.1 MGP_C3HHeJ_G0023506.1 mouse_genomes_project 17 44818785 44906523 + MGP_C3HHeJ_P0047467 Rcan2 protein_coding protein_coding MGP_C3HHeJ_T0047468.1 MGP_C3HHeJ_G0023506.1 mouse_genomes_project 17 44819881 44908628 + MGP_C3HHeJ_P0047468 Rcan2 protein_coding protein_coding MGP_C3HHeJ_T0046205.1 MGP_C3HHeJ_G0023163.1 mouse_genomes_project 17 27391603 27414570 - MGP_C3HHeJ_P0046205 Tead3 protein_coding protein_coding MGP_C3HHeJ_T0046206.1 MGP_C3HHeJ_G0023163.1 mouse_genomes_project 17 27391646 27414633 - Tead3 protein_coding retained_intron MGP_C3HHeJ_T0046207.1 MGP_C3HHeJ_G0023163.1 mouse_genomes_project 17 27393810 27406513 - MGP_C3HHeJ_P0046207 Tead3 protein_coding protein_coding MGP_C3HHeJ_T0046208.1 MGP_C3HHeJ_G0023163.1 mouse_genomes_project 17 27394596 27396506 - Tead3 protein_coding retained_intron MGP_C3HHeJ_T0046209.1 MGP_C3HHeJ_G0023163.1 mouse_genomes_project 17 27395013 27397435 - Tead3 protein_coding processed_transcript MGP_C3HHeJ_T0099083.1 MGP_C3HHeJ_G0037277.1 mouse_genomes_project 17 35665254 35665361 - Gm23864 snRNA snRNA MGP_C3HHeJ_T0048453.1 MGP_C3HHeJ_G0023828.1 mouse_genomes_project 17 90252004 90265290 - MGP_C3HHeJ_P0048453 Calm2 protein_coding protein_coding MGP_C3HHeJ_T0048454.1 MGP_C3HHeJ_G0023828.1 mouse_genomes_project 17 90253469 90265344 - Calm2 protein_coding retained_intron MGP_C3HHeJ_T0017340.1 MGP_C3HHeJ_G0015108.1 mouse_genomes_project 17 33122385 33137313 + Gm20507 processed_transcript processed_transcript MGP_C3HHeJ_T0045427.1 MGP_C3HHeJ_G0022961.1 mouse_genomes_project 17 20102928 20103183 + MGP_C3HHeJ_P0045427 Gm10226 protein_coding protein_coding MGP_C3HHeJ_T0045487.1 MGP_C3HHeJ_G0022985.1 mouse_genomes_project 17 22363127 22371415 + MGP_C3HHeJ_P0045487 Ccdc64b protein_coding protein_coding MGP_C3HHeJ_T0047536.1 MGP_C3HHeJ_G0023522.1 mouse_genomes_project 17 46562668 46594262 - MGP_C3HHeJ_P0047536 Capn11 protein_coding protein_coding MGP_C3HHeJ_T0047537.1 MGP_C3HHeJ_G0023522.1 mouse_genomes_project 17 46583157 46594234 - MGP_C3HHeJ_P0047537 Capn11 protein_coding non_stop_decay MGP_C3HHeJ_T0013139.1 MGP_C3HHeJ_G0011243.1 mouse_genomes_project 17 63105911 63106953 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013079.1 MGP_C3HHeJ_G0011183.1 mouse_genomes_project 17 23196581 23203172 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045556.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22817127 22888569 - MGP_C3HHeJ_P0045556 Pdpk1 protein_coding protein_coding MGP_C3HHeJ_T0045557.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22817135 22888662 - MGP_C3HHeJ_P0045557 Pdpk1 protein_coding protein_coding MGP_C3HHeJ_T0045558.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22819264 22888679 - MGP_C3HHeJ_P0045558 Pdpk1 protein_coding protein_coding MGP_C3HHeJ_T0045559.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22832251 22837841 - Pdpk1 protein_coding processed_transcript MGP_C3HHeJ_T0045560.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22835646 22900167 - Pdpk1 protein_coding processed_transcript MGP_C3HHeJ_T0045561.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22847922 22888665 - Pdpk1 protein_coding retained_intron MGP_C3HHeJ_T0045562.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22850798 22887915 - MGP_C3HHeJ_P0045562 Pdpk1 protein_coding protein_coding MGP_C3HHeJ_T0045563.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22850850 22864744 - MGP_C3HHeJ_P0045563 Pdpk1 protein_coding protein_coding MGP_C3HHeJ_T0045564.1 MGP_C3HHeJ_G0023013.1 mouse_genomes_project 17 22854860 22888237 - MGP_C3HHeJ_P0045564 Pdpk1 protein_coding protein_coding MGP_C3HHeJ_T0013106.1 MGP_C3HHeJ_G0011210.1 mouse_genomes_project 17 37292425 37293092 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046950.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34839278 34855287 + MGP_C3HHeJ_P0046950 Vars protein_coding protein_coding MGP_C3HHeJ_T0046951.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34839342 34854995 + MGP_C3HHeJ_P0046951 Vars protein_coding protein_coding MGP_C3HHeJ_T0046952.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34839608 34843094 + MGP_C3HHeJ_P0046952 Vars protein_coding protein_coding MGP_C3HHeJ_T0046953.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34840948 34843144 + MGP_C3HHeJ_P0046953 Vars protein_coding protein_coding MGP_C3HHeJ_T0046954.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34841005 34855287 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046955.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34842585 34843353 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046956.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34843003 34843621 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046957.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34850179 34851364 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046958.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34851128 34852047 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046959.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34852247 34853434 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046960.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34852791 34854012 + MGP_C3HHeJ_P0046960 Vars protein_coding protein_coding MGP_C3HHeJ_T0046961.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34852800 34853802 + Vars protein_coding retained_intron MGP_C3HHeJ_T0046962.1 MGP_C3HHeJ_G0023332.1 mouse_genomes_project 17 34853929 34854976 + Vars protein_coding retained_intron MGP_C3HHeJ_T0047729.1 MGP_C3HHeJ_G0023573.1 mouse_genomes_project 17 48692337 48704436 - MGP_C3HHeJ_P0047729 Bysl protein_coding protein_coding MGP_C3HHeJ_T0045398.1 MGP_C3HHeJ_G0022941.1 mouse_genomes_project 17 19110173 19111616 - MGP_C3HHeJ_P0045398 Vmn1r228 protein_coding protein_coding MGP_C3HHeJ_T0011716.1 MGP_C3HHeJ_G0009839.1 mouse_genomes_project 17 22238692 22242684 - MGP_C3HHeJ_P0011716 Casp16-ps polymorphic_pseudogene polymorphic_pseudogene MGP_C3HHeJ_T0011717.1 MGP_C3HHeJ_G0009839.1 mouse_genomes_project 17 22238800 22242606 - MGP_C3HHeJ_P0011717 Casp16-ps polymorphic_pseudogene protein_coding MGP_C3HHeJ_T0047107.1 MGP_C3HHeJ_G0023369.1 mouse_genomes_project 17 35476855 35478302 + MGP_C3HHeJ_P0047107 Psors1c2 protein_coding protein_coding MGP_C3HHeJ_T0045443.1 MGP_C3HHeJ_G0022968.1 mouse_genomes_project 17 20457191 20457983 - MGP_C3HHeJ_P0045443 Gm9772 protein_coding protein_coding MGP_C3HHeJ_T0098380.1 MGP_C3HHeJ_G0036587.1 mouse_genomes_project 17 65139197 65147010 - 4930405O22Rik sense_intronic sense_intronic MGP_C3HHeJ_T0098381.1 MGP_C3HHeJ_G0036587.1 mouse_genomes_project 17 65139430 65147012 - 4930405O22Rik sense_intronic sense_intronic MGP_C3HHeJ_T0047364.1 MGP_C3HHeJ_G0023434.1 mouse_genomes_project 17 37462621 37465428 - MGP_C3HHeJ_P0047364 Olfr99 protein_coding protein_coding MGP_C3HHeJ_T0048366.1 MGP_C3HHeJ_G0023795.1 mouse_genomes_project 17 85066213 85067042 + MGP_C3HHeJ_P0048366 protein_coding protein_coding MGP_C3HHeJ_T0003690.1 MGP_C3HHeJ_G0003321.1 mouse_genomes_project 17 36227491 36234672 + antisense antisense MGP_C3HHeJ_T0047811.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49556241 49579939 - MGP_C3HHeJ_P0047811 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047812.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49556245 49580080 - MGP_C3HHeJ_P0047812 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047813.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49556252 49579939 - MGP_C3HHeJ_P0047813 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047814.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49558361 49569898 - MGP_C3HHeJ_P0047814 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047815.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49558437 49579904 - MGP_C3HHeJ_P0047815 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047816.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49558465 49562571 - MGP_C3HHeJ_P0047816 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047817.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49558580 49562807 - MGP_C3HHeJ_P0047817 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047818.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49560236 49561502 - Nfya protein_coding retained_intron MGP_C3HHeJ_T0047819.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49561372 49568392 - MGP_C3HHeJ_P0047819 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047820.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49561400 49579915 - MGP_C3HHeJ_P0047820 Nfya protein_coding protein_coding MGP_C3HHeJ_T0047821.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49562565 49565408 - Nfya protein_coding retained_intron MGP_C3HHeJ_T0047822.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49564716 49579862 - Nfya protein_coding retained_intron MGP_C3HHeJ_T0047823.1 MGP_C3HHeJ_G0023596.1 mouse_genomes_project 17 49567280 49579924 - Nfya protein_coding retained_intron MGP_C3HHeJ_T0013069.1 MGP_C3HHeJ_G0011173.1 mouse_genomes_project 17 10391344 10392368 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010120.1 MGP_C3HHeJ_G0008253.1 mouse_genomes_project 17 35061098 35061181 - Mir6974 miRNA miRNA MGP_C3HHeJ_T0003713.1 MGP_C3HHeJ_G0003337.1 mouse_genomes_project 17 71344152 71345999 - 2410021H03Rik antisense antisense MGP_C3HHeJ_T0003682.1 MGP_C3HHeJ_G0003313.1 mouse_genomes_project 17 34310408 34310834 + Gm20463 antisense antisense MGP_C3HHeJ_T0013103.1 MGP_C3HHeJ_G0011207.1 mouse_genomes_project 17 36560342 36560915 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046766.1 MGP_C3HHeJ_G0023294.1 mouse_genomes_project 17 33864001 33869210 - MGP_C3HHeJ_P0046766 H2-Aa protein_coding protein_coding MGP_C3HHeJ_T0046767.1 MGP_C3HHeJ_G0023294.1 mouse_genomes_project 17 33864022 33869174 - MGP_C3HHeJ_P0046767 H2-Aa protein_coding protein_coding MGP_C3HHeJ_T0046768.1 MGP_C3HHeJ_G0023294.1 mouse_genomes_project 17 33865027 33869160 - H2-Aa protein_coding retained_intron MGP_C3HHeJ_T0046769.1 MGP_C3HHeJ_G0023294.1 mouse_genomes_project 17 33867858 33869202 - H2-Aa protein_coding processed_transcript MGP_C3HHeJ_T0048464.1 MGP_C3HHeJ_G0023833.1 mouse_genomes_project 17 90857747 90873735 + MGP_C3HHeJ_P0048464 Msh6 protein_coding protein_coding MGP_C3HHeJ_T0013154.1 MGP_C3HHeJ_G0011258.1 mouse_genomes_project 17 83455546 83456539 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047902.1 MGP_C3HHeJ_G0023624.1 mouse_genomes_project 17 57349636 57356426 + MGP_C3HHeJ_P0047902 Zfp959 protein_coding protein_coding MGP_C3HHeJ_T0048367.1 MGP_C3HHeJ_G0023796.1 mouse_genomes_project 17 85759945 85770340 + MGP_C3HHeJ_P0048367 Pkdcc protein_coding protein_coding MGP_C3HHeJ_T0048368.1 MGP_C3HHeJ_G0023796.1 mouse_genomes_project 17 85764742 85766381 + Pkdcc protein_coding processed_transcript MGP_C3HHeJ_T0048369.1 MGP_C3HHeJ_G0023796.1 mouse_genomes_project 17 85764742 85769556 + MGP_C3HHeJ_P0048369 Pkdcc protein_coding protein_coding MGP_C3HHeJ_T0048370.1 MGP_C3HHeJ_G0023796.1 mouse_genomes_project 17 85765673 85769867 + Pkdcc protein_coding processed_transcript MGP_C3HHeJ_T0048002.1 MGP_C3HHeJ_G0023659.1 mouse_genomes_project 17 58273045 58279532 + MGP_C3HHeJ_P0048002 Ndufa11 protein_coding protein_coding MGP_C3HHeJ_T0047304.1 MGP_C3HHeJ_G0023413.1 mouse_genomes_project 17 37026139 37038201 + MGP_C3HHeJ_P0047304 Trim31 protein_coding protein_coding MGP_C3HHeJ_T0045305.1 MGP_C3HHeJ_G0022897.1 mouse_genomes_project 17 12678714 12694280 - MGP_C3HHeJ_P0045305 Phf10 protein_coding protein_coding MGP_C3HHeJ_T0045306.1 MGP_C3HHeJ_G0022897.1 mouse_genomes_project 17 12678719 12680534 - Phf10 protein_coding retained_intron MGP_C3HHeJ_T0045307.1 MGP_C3HHeJ_G0022897.1 mouse_genomes_project 17 12680271 12686412 - Phf10 protein_coding retained_intron MGP_C3HHeJ_T0045308.1 MGP_C3HHeJ_G0022897.1 mouse_genomes_project 17 12681443 12694280 - MGP_C3HHeJ_P0045308 Phf10 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045309.1 MGP_C3HHeJ_G0022897.1 mouse_genomes_project 17 12690461 12694282 - Phf10 protein_coding retained_intron MGP_C3HHeJ_T0047474.1 MGP_C3HHeJ_G0023509.1 mouse_genomes_project 17 45059131 45157110 + MGP_C3HHeJ_P0047474 Clic5 protein_coding protein_coding MGP_C3HHeJ_T0000962.1 MGP_C3HHeJ_G0000899.1 mouse_genomes_project 17 53193846 53197940 + TEC TEC MGP_C3HHeJ_T0000967.1 MGP_C3HHeJ_G0000904.1 mouse_genomes_project 17 86606108 86610173 - TEC TEC MGP_C3HHeJ_T0046296.1 MGP_C3HHeJ_G0023182.1 mouse_genomes_project 17 28276863 28290317 + MGP_C3HHeJ_P0046296 Rab44 protein_coding protein_coding MGP_C3HHeJ_T0046297.1 MGP_C3HHeJ_G0023182.1 mouse_genomes_project 17 28278145 28289580 + Rab44 protein_coding processed_transcript MGP_C3HHeJ_T0006834.1 MGP_C3HHeJ_G0005624.1 mouse_genomes_project 17 26742274 26749286 + Gm15458 lincRNA lincRNA MGP_C3HHeJ_T0003702.1 MGP_C3HHeJ_G0003330.1 mouse_genomes_project 17 48797586 48799612 - Frs3os antisense antisense MGP_C3HHeJ_T0003703.1 MGP_C3HHeJ_G0003330.1 mouse_genomes_project 17 48797655 48798445 - Frs3os antisense antisense MGP_C3HHeJ_T0003704.1 MGP_C3HHeJ_G0003330.1 mouse_genomes_project 17 48797938 48799595 - Frs3os antisense antisense MGP_C3HHeJ_T0047745.1 MGP_C3HHeJ_G0023579.1 mouse_genomes_project 17 48786164 48789120 - MGP_C3HHeJ_P0047745 Prickle4 protein_coding protein_coding MGP_C3HHeJ_T0047746.1 MGP_C3HHeJ_G0023579.1 mouse_genomes_project 17 48786164 48790110 - MGP_C3HHeJ_P0047746 Prickle4 protein_coding protein_coding MGP_C3HHeJ_T0047747.1 MGP_C3HHeJ_G0023579.1 mouse_genomes_project 17 48786266 48788540 - Prickle4 protein_coding retained_intron MGP_C3HHeJ_T0047749.1 MGP_C3HHeJ_G0023579.1 mouse_genomes_project 17 48787225 48789047 - MGP_C3HHeJ_P0047749 Prickle4 protein_coding protein_coding MGP_C3HHeJ_T0047750.1 MGP_C3HHeJ_G0023579.1 mouse_genomes_project 17 48789859 48792385 - Prickle4 protein_coding retained_intron MGP_C3HHeJ_T0047937.1 MGP_C3HHeJ_G0023640.1 mouse_genomes_project 17 57637498 57648956 + MGP_C3HHeJ_P0047937 Tnfaip8l1 protein_coding protein_coding MGP_C3HHeJ_T0003707.1 MGP_C3HHeJ_G0003333.1 mouse_genomes_project 17 53927160 53937512 - Gm27217 antisense antisense MGP_C3HHeJ_T0099085.1 MGP_C3HHeJ_G0037279.1 mouse_genomes_project 17 41648525 41648673 - Gm23078 snRNA snRNA MGP_C3HHeJ_T0048332.1 MGP_C3HHeJ_G0023777.1 mouse_genomes_project 17 82316004 82365034 - MGP_C3HHeJ_P0048332 Atl2 protein_coding protein_coding MGP_C3HHeJ_T0048333.1 MGP_C3HHeJ_G0023777.1 mouse_genomes_project 17 82318300 82365032 - MGP_C3HHeJ_P0048333 Atl2 protein_coding protein_coding MGP_C3HHeJ_T0010113.1 MGP_C3HHeJ_G0008246.1 mouse_genomes_project 17 33585707 33585817 - Mir219a-1 miRNA miRNA MGP_C3HHeJ_T0046771.1 MGP_C3HHeJ_G0023296.1 mouse_genomes_project 17 33914115 33929246 + MGP_C3HHeJ_P0046771 H2-Eb2 protein_coding protein_coding MGP_C3HHeJ_T0010107.1 MGP_C3HHeJ_G0008240.1 mouse_genomes_project 17 27605290 27605416 + Gm25195 miRNA miRNA MGP_C3HHeJ_T0045653.1 MGP_C3HHeJ_G0023031.1 mouse_genomes_project 17 23318292 23324809 - MGP_C3HHeJ_P0045653 Rab26 protein_coding protein_coding MGP_C3HHeJ_T0045654.1 MGP_C3HHeJ_G0023031.1 mouse_genomes_project 17 23320144 23324971 - MGP_C3HHeJ_P0045654 Rab26 protein_coding protein_coding MGP_C3HHeJ_T0045655.1 MGP_C3HHeJ_G0023031.1 mouse_genomes_project 17 23320155 23324795 - Rab26 protein_coding retained_intron MGP_C3HHeJ_T0045656.1 MGP_C3HHeJ_G0023031.1 mouse_genomes_project 17 23320411 23321039 - Rab26 protein_coding retained_intron MGP_C3HHeJ_T0045657.1 MGP_C3HHeJ_G0023031.1 mouse_genomes_project 17 23320633 23325293 - MGP_C3HHeJ_P0045657 Rab26 protein_coding protein_coding MGP_C3HHeJ_T0045881.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24640230 24645928 - MGP_C3HHeJ_P0045881 Haghl protein_coding protein_coding MGP_C3HHeJ_T0045882.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24643177 24645723 - Haghl protein_coding retained_intron MGP_C3HHeJ_T0045883.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24643189 24645920 - Haghl protein_coding retained_intron MGP_C3HHeJ_T0045884.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24643201 24645958 - MGP_C3HHeJ_P0045884 Haghl protein_coding protein_coding MGP_C3HHeJ_T0045885.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24643927 24645955 - Haghl protein_coding retained_intron MGP_C3HHeJ_T0045886.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24644216 24645954 - Haghl protein_coding retained_intron MGP_C3HHeJ_T0045887.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24644520 24645693 - Haghl protein_coding retained_intron MGP_C3HHeJ_T0045888.1 MGP_C3HHeJ_G0023090.1 mouse_genomes_project 17 24644703 24645931 - MGP_C3HHeJ_P0045888 Haghl protein_coding protein_coding MGP_C3HHeJ_T0047590.1 MGP_C3HHeJ_G0023532.1 mouse_genomes_project 17 47178563 47218248 + MGP_C3HHeJ_P0047590 Xpo5 protein_coding protein_coding MGP_C3HHeJ_T0048182.1 MGP_C3HHeJ_G0023725.1 mouse_genomes_project 17 73098166 73114762 - MGP_C3HHeJ_P0048182 Myl12b protein_coding protein_coding MGP_C3HHeJ_T0048183.1 MGP_C3HHeJ_G0023725.1 mouse_genomes_project 17 73098517 73100213 - Myl12b protein_coding retained_intron MGP_C3HHeJ_T0048184.1 MGP_C3HHeJ_G0023725.1 mouse_genomes_project 17 73101174 73114505 - Myl12b protein_coding retained_intron MGP_C3HHeJ_T0048039.1 MGP_C3HHeJ_G0023680.1 mouse_genomes_project 17 58720072 58723853 - MGP_C3HHeJ_P0048039 Cd70 protein_coding protein_coding MGP_C3HHeJ_T0046868.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664282 34667614 + MGP_C3HHeJ_P0046868 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046869.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664282 34667661 + MGP_C3HHeJ_P0046869 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046870.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664282 34667076 + MGP_C3HHeJ_P0046870 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046871.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664345 34665623 + Dxo protein_coding retained_intron MGP_C3HHeJ_T0046872.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664511 34665241 + MGP_C3HHeJ_P0046872 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046873.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664662 34667565 + MGP_C3HHeJ_P0046873 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046874.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34664920 34667566 + MGP_C3HHeJ_P0046874 Dxo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046875.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34665256 34667111 + MGP_C3HHeJ_P0046875 Dxo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046876.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34665558 34667565 + MGP_C3HHeJ_P0046876 Dxo protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046877.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34665587 34667565 + MGP_C3HHeJ_P0046877 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046878.1 MGP_C3HHeJ_G0023317.1 mouse_genomes_project 17 34665707 34667551 + MGP_C3HHeJ_P0046878 Dxo protein_coding protein_coding MGP_C3HHeJ_T0046254.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27910959 27947929 + MGP_C3HHeJ_P0046254 Brpf3 protein_coding protein_coding MGP_C3HHeJ_T0046255.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27911643 27916169 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0046256.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27919469 27926567 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0046257.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27920361 27947876 + Brpf3 protein_coding retained_intron MGP_C3HHeJ_T0046258.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27923847 27926945 + Brpf3 protein_coding retained_intron MGP_C3HHeJ_T0046259.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27924000 27927183 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0046260.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27932019 27946081 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0046261.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27932974 27946119 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0046262.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27933054 27947924 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0046263.1 MGP_C3HHeJ_G0023174.1 mouse_genomes_project 17 27937462 27946174 + Brpf3 protein_coding processed_transcript MGP_C3HHeJ_T0045413.1 MGP_C3HHeJ_G0022950.1 mouse_genomes_project 17 19660338 19662775 + MGP_C3HHeJ_P0045413 Vmn1r235 protein_coding protein_coding MGP_C3HHeJ_T0003700.1 MGP_C3HHeJ_G0003328.1 mouse_genomes_project 17 46598453 46601183 + Gm16172 antisense antisense MGP_C3HHeJ_T0047533.1 MGP_C3HHeJ_G0023521.1 mouse_genomes_project 17 46532882 46534018 - MGP_C3HHeJ_P0047533 Gm7325 protein_coding protein_coding MGP_C3HHeJ_T0047534.1 MGP_C3HHeJ_G0023521.1 mouse_genomes_project 17 46532882 46533983 - MGP_C3HHeJ_P0047534 Gm7325 protein_coding protein_coding MGP_C3HHeJ_T0047535.1 MGP_C3HHeJ_G0023521.1 mouse_genomes_project 17 46532882 46533831 - MGP_C3HHeJ_P0047535 Gm7325 protein_coding protein_coding MGP_C3HHeJ_T0010135.1 MGP_C3HHeJ_G0008268.1 mouse_genomes_project 17 66181315 66181405 - Gm24194 miRNA miRNA MGP_C3HHeJ_T0045237.1 MGP_C3HHeJ_G0022877.1 mouse_genomes_project 17 9987053 10073790 - MGP_C3HHeJ_P0045237 Slc22a3 protein_coding protein_coding MGP_C3HHeJ_T0010134.1 MGP_C3HHeJ_G0008267.1 mouse_genomes_project 17 65181720 65181804 + Gm24813 miRNA miRNA MGP_C3HHeJ_T0003631.1 MGP_C3HHeJ_G0003283.1 mouse_genomes_project 17 2548673 2577241 + Gm29050 antisense antisense MGP_C3HHeJ_T0003632.1 MGP_C3HHeJ_G0003283.1 mouse_genomes_project 17 2563959 2579497 + Gm29050 antisense antisense MGP_C3HHeJ_T0010095.1 MGP_C3HHeJ_G0008228.1 mouse_genomes_project 17 24607330 24607422 - Gm25083 miRNA miRNA MGP_C3HHeJ_T0045612.1 MGP_C3HHeJ_G0023023.1 mouse_genomes_project 17 23205921 23221906 + MGP_C3HHeJ_P0045612 Eci1 protein_coding protein_coding MGP_C3HHeJ_T0048059.1 MGP_C3HHeJ_G0023690.1 mouse_genomes_project 17 60475000 60481222 - Pdzph1 protein_coding retained_intron MGP_C3HHeJ_T0048060.1 MGP_C3HHeJ_G0023690.1 mouse_genomes_project 17 60475000 60596950 - MGP_C3HHeJ_P0048060 Pdzph1 protein_coding protein_coding MGP_C3HHeJ_T0048061.1 MGP_C3HHeJ_G0023690.1 mouse_genomes_project 17 60475162 60490584 - MGP_C3HHeJ_P0048061 Pdzph1 protein_coding protein_coding MGP_C3HHeJ_T0045170.1 MGP_C3HHeJ_G0022859.1 mouse_genomes_project 17 5366524 5421232 + MGP_C3HHeJ_P0045170 protein_coding protein_coding MGP_C3HHeJ_T0047382.1 MGP_C3HHeJ_G0023449.1 mouse_genomes_project 17 37880575 37881672 - MGP_C3HHeJ_P0047382 Olfr117 protein_coding protein_coding MGP_C3HHeJ_T0046035.1 MGP_C3HHeJ_G0023123.1 mouse_genomes_project 17 25185900 25186788 - MGP_C3HHeJ_P0046035 protein_coding protein_coding MGP_C3HHeJ_T0006820.1 MGP_C3HHeJ_G0005612.1 mouse_genomes_project 17 19891151 19894844 - Gm26753 lincRNA lincRNA MGP_C3HHeJ_T0046100.1 MGP_C3HHeJ_G0023142.1 mouse_genomes_project 17 26151135 26165823 - MGP_C3HHeJ_P0046100 Lemd2 protein_coding protein_coding MGP_C3HHeJ_T0048020.1 MGP_C3HHeJ_G0023671.1 mouse_genomes_project 17 58570491 58578375 - MGP_C3HHeJ_P0048020 Gtf2f1 protein_coding protein_coding MGP_C3HHeJ_T0045907.1 MGP_C3HHeJ_G0023098.1 mouse_genomes_project 17 24696539 24703833 - MGP_C3HHeJ_P0045907 Gm20683 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048428.1 MGP_C3HHeJ_G0023823.1 mouse_genomes_project 17 89803476 89817192 + MGP_C3HHeJ_P0048428 Cript protein_coding protein_coding MGP_C3HHeJ_T0048429.1 MGP_C3HHeJ_G0023823.1 mouse_genomes_project 17 89803536 89806158 + Cript protein_coding retained_intron MGP_C3HHeJ_T0048430.1 MGP_C3HHeJ_G0023823.1 mouse_genomes_project 17 89803537 89816854 + MGP_C3HHeJ_P0048430 Cript protein_coding protein_coding MGP_C3HHeJ_T0101819.1 MGP_C3HHeJ_G0039784.1 mouse_genomes_project 17 34508664 34594617 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047700.1 MGP_C3HHeJ_G0023568.1 mouse_genomes_project 17 48463992 48469988 - MGP_C3HHeJ_P0047700 Guca1a protein_coding protein_coding MGP_C3HHeJ_T0101783.1 MGP_C3HHeJ_G0039748.1 mouse_genomes_project 17 16923011 17408360 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045807.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24081621 24082998 - Baiap3 protein_coding retained_intron MGP_C3HHeJ_T0045808.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24081621 24095300 - MGP_C3HHeJ_P0045808 Baiap3 protein_coding protein_coding MGP_C3HHeJ_T0045809.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24082319 24092885 - MGP_C3HHeJ_P0045809 Baiap3 protein_coding protein_coding MGP_C3HHeJ_T0045810.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24082334 24083276 - MGP_C3HHeJ_P0045810 Baiap3 protein_coding protein_coding MGP_C3HHeJ_T0045811.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24082343 24095217 - MGP_C3HHeJ_P0045811 Baiap3 protein_coding protein_coding MGP_C3HHeJ_T0045812.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24082486 24095217 - MGP_C3HHeJ_P0045812 Baiap3 protein_coding protein_coding MGP_C3HHeJ_T0045813.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24083755 24084746 - Baiap3 protein_coding retained_intron MGP_C3HHeJ_T0045814.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24084975 24087073 - Baiap3 protein_coding retained_intron MGP_C3HHeJ_T0045815.1 MGP_C3HHeJ_G0023071.1 mouse_genomes_project 17 24089958 24095210 - Baiap3 protein_coding retained_intron MGP_C3HHeJ_T0045243.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10415487 10444562 - MGP_C3HHeJ_P0045243 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045244.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10415523 10428565 - MGP_C3HHeJ_P0045244 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045245.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10415523 10428445 - MGP_C3HHeJ_P0045245 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045246.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10415523 10428565 - MGP_C3HHeJ_P0045246 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045247.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10415523 10422463 - MGP_C3HHeJ_P0045247 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045248.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10416612 10426020 - MGP_C3HHeJ_P0045248 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045249.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10416715 10426006 - MGP_C3HHeJ_P0045249 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045250.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10416726 10426020 - MGP_C3HHeJ_P0045250 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0045251.1 MGP_C3HHeJ_G0022881.1 mouse_genomes_project 17 10416869 10430765 - MGP_C3HHeJ_P0045251 Mas1 protein_coding protein_coding MGP_C3HHeJ_T0047080.1 MGP_C3HHeJ_G0023363.1 mouse_genomes_project 17 35118459 35123143 + MGP_C3HHeJ_P0047080 protein_coding protein_coding MGP_C3HHeJ_T0047408.1 MGP_C3HHeJ_G0023469.1 mouse_genomes_project 17 38605052 38605991 + MGP_C3HHeJ_P0047408 Olfr136 protein_coding protein_coding MGP_C3HHeJ_T0098077.1 MGP_C3HHeJ_G0036289.1 mouse_genomes_project 17 81300316 81300435 + n-R5s29 rRNA rRNA MGP_C3HHeJ_T0010129.1 MGP_C3HHeJ_G0008262.1 mouse_genomes_project 17 50304940 50305085 - Gm44304 miRNA miRNA MGP_C3HHeJ_T0101858.1 MGP_C3HHeJ_G0039823.1 mouse_genomes_project 17 38578357 38580070 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048245.1 MGP_C3HHeJ_G0023743.1 mouse_genomes_project 17 75716366 75954357 - MGP_C3HHeJ_P0048245 Galnt14 protein_coding protein_coding MGP_C3HHeJ_T0048246.1 MGP_C3HHeJ_G0023743.1 mouse_genomes_project 17 75730708 75954321 - MGP_C3HHeJ_P0048246 Galnt14 protein_coding protein_coding MGP_C3HHeJ_T0048247.1 MGP_C3HHeJ_G0023743.1 mouse_genomes_project 17 75805318 75954359 - Galnt14 protein_coding retained_intron MGP_C3HHeJ_T0046040.1 MGP_C3HHeJ_G0023125.1 mouse_genomes_project 17 25417140 25420070 - MGP_C3HHeJ_P0046040 Dusp1 protein_coding protein_coding MGP_C3HHeJ_T0046041.1 MGP_C3HHeJ_G0023125.1 mouse_genomes_project 17 25417141 25420025 - Dusp1 protein_coding retained_intron MGP_C3HHeJ_T0046042.1 MGP_C3HHeJ_G0023125.1 mouse_genomes_project 17 25418066 25419274 - Dusp1 protein_coding retained_intron MGP_C3HHeJ_T0047396.1 MGP_C3HHeJ_G0023462.1 mouse_genomes_project 17 38345389 38353083 - MGP_C3HHeJ_P0047396 Olfr131 protein_coding protein_coding MGP_C3HHeJ_T0047397.1 MGP_C3HHeJ_G0023462.1 mouse_genomes_project 17 38345389 38346419 - MGP_C3HHeJ_P0047397 Olfr131 protein_coding protein_coding MGP_C3HHeJ_T0046053.1 MGP_C3HHeJ_G0023129.1 mouse_genomes_project 17 25636094 25697835 + MGP_C3HHeJ_P0046053 Crebrf protein_coding protein_coding MGP_C3HHeJ_T0046054.1 MGP_C3HHeJ_G0023129.1 mouse_genomes_project 17 25636099 25663797 + MGP_C3HHeJ_P0046054 Crebrf protein_coding protein_coding MGP_C3HHeJ_T0046055.1 MGP_C3HHeJ_G0023129.1 mouse_genomes_project 17 25636154 25685590 + MGP_C3HHeJ_P0046055 Crebrf protein_coding protein_coding MGP_C3HHeJ_T0046056.1 MGP_C3HHeJ_G0023129.1 mouse_genomes_project 17 25636168 25683629 + MGP_C3HHeJ_P0046056 Crebrf protein_coding protein_coding MGP_C3HHeJ_T0046057.1 MGP_C3HHeJ_G0023129.1 mouse_genomes_project 17 25663821 25679518 + Crebrf protein_coding retained_intron MGP_C3HHeJ_T0046058.1 MGP_C3HHeJ_G0023129.1 mouse_genomes_project 17 25679032 25681250 + Crebrf protein_coding retained_intron MGP_C3HHeJ_T0047390.1 MGP_C3HHeJ_G0023457.1 mouse_genomes_project 17 38092097 38093215 + MGP_C3HHeJ_P0047390 Olfr125 protein_coding protein_coding MGP_C3HHeJ_T0101802.1 MGP_C3HHeJ_G0039767.1 mouse_genomes_project 17 19669205 19669386 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0017336.1 MGP_C3HHeJ_G0015104.1 mouse_genomes_project 17 24423830 24428049 + 2810468N07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0045445.1 MGP_C3HHeJ_G0022969.1 mouse_genomes_project 17 20542889 20861804 - MGP_C3HHeJ_P0045445 protein_coding protein_coding MGP_C3HHeJ_T0045375.1 MGP_C3HHeJ_G0022919.1 mouse_genomes_project 17 16333708 16363249 + MGP_C3HHeJ_P0045375 protein_coding protein_coding MGP_C3HHeJ_T0000958.1 MGP_C3HHeJ_G0000895.1 mouse_genomes_project 17 53129166 53132341 - TEC TEC MGP_C3HHeJ_T0013140.1 MGP_C3HHeJ_G0011244.1 mouse_genomes_project 17 65180969 65181460 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013101.1 MGP_C3HHeJ_G0011205.1 mouse_genomes_project 17 36320382 36320652 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046298.1 MGP_C3HHeJ_G0023183.1 mouse_genomes_project 17 28297885 28381975 - MGP_C3HHeJ_P0046298 Cpne5 protein_coding protein_coding MGP_C3HHeJ_T0046299.1 MGP_C3HHeJ_G0023183.1 mouse_genomes_project 17 28299251 28326882 - Cpne5 protein_coding processed_transcript MGP_C3HHeJ_T0046300.1 MGP_C3HHeJ_G0023183.1 mouse_genomes_project 17 28312209 28319462 - Cpne5 protein_coding processed_transcript MGP_C3HHeJ_T0046301.1 MGP_C3HHeJ_G0023183.1 mouse_genomes_project 17 28331088 28381937 - MGP_C3HHeJ_P0046301 Cpne5 protein_coding protein_coding MGP_C3HHeJ_T0046302.1 MGP_C3HHeJ_G0023183.1 mouse_genomes_project 17 28362211 28381890 - Cpne5 protein_coding retained_intron MGP_C3HHeJ_T0046378.1 MGP_C3HHeJ_G0023203.1 mouse_genomes_project 17 30308645 30365706 + MGP_C3HHeJ_P0046378 Umodl1 protein_coding protein_coding MGP_C3HHeJ_T0046379.1 MGP_C3HHeJ_G0023203.1 mouse_genomes_project 17 30308645 30365706 + MGP_C3HHeJ_P0046379 Umodl1 protein_coding protein_coding MGP_C3HHeJ_T0046380.1 MGP_C3HHeJ_G0023203.1 mouse_genomes_project 17 30308649 30365706 + MGP_C3HHeJ_P0046380 Umodl1 protein_coding protein_coding MGP_C3HHeJ_T0046381.1 MGP_C3HHeJ_G0023203.1 mouse_genomes_project 17 30308714 30363738 + MGP_C3HHeJ_P0046381 Umodl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048151.1 MGP_C3HHeJ_G0023720.1 mouse_genomes_project 17 71454330 71461724 + MGP_C3HHeJ_P0048151 Zbtb14 protein_coding protein_coding MGP_C3HHeJ_T0048376.1 MGP_C3HHeJ_G0023799.1 mouse_genomes_project 17 86149282 86202535 - MGP_C3HHeJ_P0048376 Kcng3 protein_coding protein_coding MGP_C3HHeJ_T0046851.1 MGP_C3HHeJ_G0023312.1 mouse_genomes_project 17 34358827 34366771 + MGP_C3HHeJ_P0046851 Atf6b protein_coding protein_coding MGP_C3HHeJ_T0046852.1 MGP_C3HHeJ_G0023312.1 mouse_genomes_project 17 34358882 34360831 + MGP_C3HHeJ_P0046852 Atf6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046853.1 MGP_C3HHeJ_G0023312.1 mouse_genomes_project 17 34358882 34360886 + MGP_C3HHeJ_P0046853 Atf6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046854.1 MGP_C3HHeJ_G0023312.1 mouse_genomes_project 17 34358892 34366576 + MGP_C3HHeJ_P0046854 Atf6b protein_coding protein_coding MGP_C3HHeJ_T0046855.1 MGP_C3HHeJ_G0023312.1 mouse_genomes_project 17 34363318 34363799 + Atf6b protein_coding retained_intron MGP_C3HHeJ_T0047421.1 MGP_C3HHeJ_G0023481.1 mouse_genomes_project 17 41227301 41238112 + MGP_C3HHeJ_P0047421 Esp8 protein_coding protein_coding MGP_C3HHeJ_T0101830.1 MGP_C3HHeJ_G0039795.1 mouse_genomes_project 17 36273755 36274672 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045422.1 MGP_C3HHeJ_G0022956.1 mouse_genomes_project 17 19895131 19915636 + MGP_C3HHeJ_P0045422 Zfp53 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046824.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34313515 34320968 + MGP_C3HHeJ_P0046824 Agpat1 protein_coding protein_coding MGP_C3HHeJ_T0046825.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34314097 34320667 + MGP_C3HHeJ_P0046825 Agpat1 protein_coding protein_coding MGP_C3HHeJ_T0046826.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34315117 34322726 + MGP_C3HHeJ_P0046826 Agpat1 protein_coding protein_coding MGP_C3HHeJ_T0046827.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34315117 34321714 + MGP_C3HHeJ_P0046827 Agpat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046828.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34315229 34322162 + MGP_C3HHeJ_P0046828 Agpat1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046829.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34318270 34322725 + MGP_C3HHeJ_P0046829 Agpat1 protein_coding protein_coding MGP_C3HHeJ_T0046830.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34318875 34322695 + MGP_C3HHeJ_P0046830 Agpat1 protein_coding protein_coding MGP_C3HHeJ_T0046831.1 MGP_C3HHeJ_G0023307.1 mouse_genomes_project 17 34319530 34320448 + Agpat1 protein_coding retained_intron MGP_C3HHeJ_T0101817.1 MGP_C3HHeJ_G0039782.1 mouse_genomes_project 17 34456879 34462194 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046539.1 MGP_C3HHeJ_G0023247.1 mouse_genomes_project 17 32589914 32606786 + MGP_C3HHeJ_P0046539 Zfp563 protein_coding protein_coding MGP_C3HHeJ_T0046540.1 MGP_C3HHeJ_G0023247.1 mouse_genomes_project 17 32590168 32605307 + MGP_C3HHeJ_P0046540 Zfp563 protein_coding protein_coding MGP_C3HHeJ_T0046541.1 MGP_C3HHeJ_G0023247.1 mouse_genomes_project 17 32593043 32605641 + MGP_C3HHeJ_P0046541 Zfp563 protein_coding protein_coding MGP_C3HHeJ_T0100344.1 MGP_C3HHeJ_G0038538.1 mouse_genomes_project 17 36968365 36968492 - Gm25973 snoRNA snoRNA MGP_C3HHeJ_T0045447.1 MGP_C3HHeJ_G0022970.1 mouse_genomes_project 17 20668585 20691608 - MGP_C3HHeJ_P0045447 Zfp947 protein_coding protein_coding MGP_C3HHeJ_T0046788.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34267576 34295927 + MGP_C3HHeJ_P0046788 Notch4 protein_coding protein_coding MGP_C3HHeJ_T0046789.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34267606 34268925 + Notch4 protein_coding processed_transcript MGP_C3HHeJ_T0046790.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34267645 34295655 + MGP_C3HHeJ_P0046790 Notch4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046791.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34267754 34298740 + MGP_C3HHeJ_P0046791 Notch4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046792.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34268444 34268886 + Notch4 protein_coding retained_intron MGP_C3HHeJ_T0046793.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34283932 34289908 + Notch4 protein_coding processed_transcript MGP_C3HHeJ_T0046794.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34291310 34294046 + MGP_C3HHeJ_P0046794 Notch4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046795.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34291310 34294098 + MGP_C3HHeJ_P0046795 Notch4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046796.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34292001 34293076 + Notch4 protein_coding retained_intron MGP_C3HHeJ_T0046797.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34293088 34294047 + Notch4 protein_coding retained_intron MGP_C3HHeJ_T0046798.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34293698 34294897 + Notch4 protein_coding retained_intron MGP_C3HHeJ_T0046799.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34294368 34294925 + Notch4 protein_coding processed_transcript MGP_C3HHeJ_T0046800.1 MGP_C3HHeJ_G0023302.1 mouse_genomes_project 17 34294464 34295242 + Notch4 protein_coding processed_transcript MGP_C3HHeJ_T0046965.1 MGP_C3HHeJ_G0023334.1 mouse_genomes_project 17 34864925 34867670 - Sapcd1 protein_coding retained_intron MGP_C3HHeJ_T0046966.1 MGP_C3HHeJ_G0023334.1 mouse_genomes_project 17 34864925 34867925 - MGP_C3HHeJ_P0046966 Sapcd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046967.1 MGP_C3HHeJ_G0023334.1 mouse_genomes_project 17 34864941 34868027 - MGP_C3HHeJ_P0046967 Sapcd1 protein_coding protein_coding MGP_C3HHeJ_T0046968.1 MGP_C3HHeJ_G0023334.1 mouse_genomes_project 17 34865229 34868027 - MGP_C3HHeJ_P0046968 Sapcd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047943.1 MGP_C3HHeJ_G0023644.1 mouse_genomes_project 17 57766475 57774925 - MGP_C3HHeJ_P0047943 Ticam1 protein_coding protein_coding MGP_C3HHeJ_T0048249.1 MGP_C3HHeJ_G0023745.1 mouse_genomes_project 17 76134314 76203917 - MGP_C3HHeJ_P0048249 Xdh protein_coding protein_coding MGP_C3HHeJ_T0011330.1 MGP_C3HHeJ_G0009463.1 mouse_genomes_project 17 37093709 37093785 - Gm27735 misc_RNA misc_RNA MGP_C3HHeJ_T0048258.1 MGP_C3HHeJ_G0023753.1 mouse_genomes_project 17 76769590 76781054 + MGP_C3HHeJ_P0048258 Yipf4 protein_coding protein_coding MGP_C3HHeJ_T0003679.1 MGP_C3HHeJ_G0003311.1 mouse_genomes_project 17 33645956 33657921 - BC051537 antisense antisense MGP_C3HHeJ_T0046514.1 MGP_C3HHeJ_G0023237.1 mouse_genomes_project 17 32297739 32313465 - MGP_C3HHeJ_P0046514 Zfp811 protein_coding protein_coding MGP_C3HHeJ_T0046515.1 MGP_C3HHeJ_G0023237.1 mouse_genomes_project 17 32299911 32303443 - MGP_C3HHeJ_P0046515 Zfp811 protein_coding protein_coding MGP_C3HHeJ_T0045138.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3304056 3337692 + protein_coding processed_transcript MGP_C3HHeJ_T0045139.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3304098 3411109 + MGP_C3HHeJ_P0045139 protein_coding protein_coding MGP_C3HHeJ_T0045140.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3321177 3323764 + protein_coding processed_transcript MGP_C3HHeJ_T0045141.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3336110 3337689 + protein_coding processed_transcript MGP_C3HHeJ_T0045142.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3337047 3433809 + protein_coding retained_intron MGP_C3HHeJ_T0045143.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3337047 3454264 + MGP_C3HHeJ_P0045143 protein_coding protein_coding MGP_C3HHeJ_T0045144.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3380146 3454264 + MGP_C3HHeJ_P0045144 protein_coding protein_coding MGP_C3HHeJ_T0045145.1 MGP_C3HHeJ_G0022844.1 mouse_genomes_project 17 3380146 3448241 + MGP_C3HHeJ_P0045145 protein_coding unknown_likely_coding MGP_C3HHeJ_T0013068.1 MGP_C3HHeJ_G0011172.1 mouse_genomes_project 17 10390318 10391063 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047359.1 MGP_C3HHeJ_G0023429.1 mouse_genomes_project 17 37391609 37392583 - MGP_C3HHeJ_P0047359 Olfr95 protein_coding protein_coding MGP_C3HHeJ_T0047679.1 MGP_C3HHeJ_G0023560.1 mouse_genomes_project 17 47833379 47873419 - MGP_C3HHeJ_P0047679 Gltscr1l protein_coding unknown_likely_coding MGP_C3HHeJ_T0047680.1 MGP_C3HHeJ_G0023560.1 mouse_genomes_project 17 47833379 47870627 - MGP_C3HHeJ_P0047680 Gltscr1l protein_coding protein_coding MGP_C3HHeJ_T0048517.1 MGP_C3HHeJ_G0023843.1 mouse_genomes_project 17 96206842 96212915 + MGP_C3HHeJ_P0048517 Adcyap1 protein_coding protein_coding MGP_C3HHeJ_T0100339.1 MGP_C3HHeJ_G0038533.1 mouse_genomes_project 17 34784746 34784812 - Snord52 snoRNA snoRNA MGP_C3HHeJ_T0010102.1 MGP_C3HHeJ_G0008235.1 mouse_genomes_project 17 26049002 26049069 + Mir7677 miRNA miRNA MGP_C3HHeJ_T0048405.1 MGP_C3HHeJ_G0023809.1 mouse_genomes_project 17 87653027 87664052 + MGP_C3HHeJ_P0048405 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101850.1 MGP_C3HHeJ_G0039815.1 mouse_genomes_project 17 37578638 37579008 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047994.1 MGP_C3HHeJ_G0023653.1 mouse_genomes_project 17 58150537 58152857 - MGP_C3HHeJ_P0047994 2410015M20Rik protein_coding protein_coding MGP_C3HHeJ_T0045890.1 MGP_C3HHeJ_G0023092.1 mouse_genomes_project 17 24650853 24652630 - MGP_C3HHeJ_P0045890 Fam173a protein_coding protein_coding MGP_C3HHeJ_T0000953.1 MGP_C3HHeJ_G0000890.1 mouse_genomes_project 17 51472280 51473297 + TEC TEC MGP_C3HHeJ_T0047365.1 MGP_C3HHeJ_G0023435.1 mouse_genomes_project 17 37484138 37488142 - MGP_C3HHeJ_P0047365 protein_coding protein_coding MGP_C3HHeJ_T0006833.1 MGP_C3HHeJ_G0005623.1 mouse_genomes_project 17 26332500 26334866 + Gm10505 lincRNA lincRNA MGP_C3HHeJ_T0013078.1 MGP_C3HHeJ_G0011182.1 mouse_genomes_project 17 22768868 22769376 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045199.1 MGP_C3HHeJ_G0022866.1 mouse_genomes_project 17 5884582 5892658 + MGP_C3HHeJ_P0045199 T protein_coding protein_coding MGP_C3HHeJ_T0045200.1 MGP_C3HHeJ_G0022866.1 mouse_genomes_project 17 5885084 5887154 + MGP_C3HHeJ_P0045200 T protein_coding protein_coding MGP_C3HHeJ_T0045201.1 MGP_C3HHeJ_G0022866.1 mouse_genomes_project 17 5885570 5891904 + MGP_C3HHeJ_P0045201 T protein_coding protein_coding MGP_C3HHeJ_T0003637.1 MGP_C3HHeJ_G0003286.1 mouse_genomes_project 17 7987774 8009627 + A230009B12Rik antisense antisense MGP_C3HHeJ_T0003638.1 MGP_C3HHeJ_G0003286.1 mouse_genomes_project 17 7987780 8009263 + A230009B12Rik antisense antisense MGP_C3HHeJ_T0003639.1 MGP_C3HHeJ_G0003286.1 mouse_genomes_project 17 7987854 8028744 + A230009B12Rik antisense antisense MGP_C3HHeJ_T0003640.1 MGP_C3HHeJ_G0003286.1 mouse_genomes_project 17 8000460 8009262 + A230009B12Rik antisense antisense MGP_C3HHeJ_T0048284.1 MGP_C3HHeJ_G0023756.1 mouse_genomes_project 17 77293874 77694702 + MGP_C3HHeJ_P0048284 Ltbp1 protein_coding protein_coding MGP_C3HHeJ_T0048285.1 MGP_C3HHeJ_G0023756.1 mouse_genomes_project 17 77476580 77694271 + MGP_C3HHeJ_P0048285 Ltbp1 protein_coding protein_coding MGP_C3HHeJ_T0048286.1 MGP_C3HHeJ_G0023756.1 mouse_genomes_project 17 77476580 77650388 + MGP_C3HHeJ_P0048286 Ltbp1 protein_coding protein_coding MGP_C3HHeJ_T0048287.1 MGP_C3HHeJ_G0023756.1 mouse_genomes_project 17 77476681 77694257 + MGP_C3HHeJ_P0048287 Ltbp1 protein_coding protein_coding MGP_C3HHeJ_T0048288.1 MGP_C3HHeJ_G0023756.1 mouse_genomes_project 17 77590157 77594544 + Ltbp1 protein_coding retained_intron MGP_C3HHeJ_T0048289.1 MGP_C3HHeJ_G0023756.1 mouse_genomes_project 17 77687126 77695447 + Ltbp1 protein_coding retained_intron MGP_C3HHeJ_T0048014.1 MGP_C3HHeJ_G0023667.1 mouse_genomes_project 17 58513949 58545798 - MGP_C3HHeJ_P0048014 Acer1 protein_coding protein_coding MGP_C3HHeJ_T0047022.1 MGP_C3HHeJ_G0023347.1 mouse_genomes_project 17 34970980 34975130 + MGP_C3HHeJ_P0047022 protein_coding protein_coding MGP_C3HHeJ_T0047023.1 MGP_C3HHeJ_G0023347.1 mouse_genomes_project 17 34971158 34971841 + protein_coding processed_transcript MGP_C3HHeJ_T0045541.1 MGP_C3HHeJ_G0023005.1 mouse_genomes_project 17 22602643 22604618 + MGP_C3HHeJ_P0045541 protein_coding protein_coding MGP_C3HHeJ_T0045542.1 MGP_C3HHeJ_G0023005.1 mouse_genomes_project 17 22602761 22604595 + MGP_C3HHeJ_P0045542 protein_coding protein_coding MGP_C3HHeJ_T0101828.1 MGP_C3HHeJ_G0039793.1 mouse_genomes_project 17 36261240 36262171 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045376.1 MGP_C3HHeJ_G0022920.1 mouse_genomes_project 17 16458285 16489053 + MGP_C3HHeJ_P0045376 protein_coding protein_coding MGP_C3HHeJ_T0006886.1 MGP_C3HHeJ_G0005662.1 mouse_genomes_project 17 66387458 66432161 - AU016765 lincRNA lincRNA MGP_C3HHeJ_T0006887.1 MGP_C3HHeJ_G0005662.1 mouse_genomes_project 17 66387511 66432119 - AU016765 lincRNA lincRNA MGP_C3HHeJ_T0006888.1 MGP_C3HHeJ_G0005662.1 mouse_genomes_project 17 66387514 66432199 - AU016765 lincRNA lincRNA MGP_C3HHeJ_T0006889.1 MGP_C3HHeJ_G0005662.1 mouse_genomes_project 17 66387516 66432042 - AU016765 lincRNA lincRNA MGP_C3HHeJ_T0046369.1 MGP_C3HHeJ_G0023198.1 mouse_genomes_project 17 29199810 29416338 + MGP_C3HHeJ_P0046369 Zfand3 protein_coding protein_coding MGP_C3HHeJ_T0046370.1 MGP_C3HHeJ_G0023198.1 mouse_genomes_project 17 29201176 29416348 + MGP_C3HHeJ_P0046370 Zfand3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0101848.1 MGP_C3HHeJ_G0039813.1 mouse_genomes_project 17 37470090 37471018 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045426.1 MGP_C3HHeJ_G0022960.1 mouse_genomes_project 17 20101834 20102093 + MGP_C3HHeJ_P0045426 Gm10509 protein_coding protein_coding MGP_C3HHeJ_T0048409.1 MGP_C3HHeJ_G0023812.1 mouse_genomes_project 17 87751917 88133369 + MGP_C3HHeJ_P0048409 Camkmt protein_coding protein_coding MGP_C3HHeJ_T0046332.1 MGP_C3HHeJ_G0023190.1 mouse_genomes_project 17 28688332 28688842 - MGP_C3HHeJ_P0046332 Gm17657 protein_coding protein_coding MGP_C3HHeJ_T0101791.1 MGP_C3HHeJ_G0039756.1 mouse_genomes_project 17 18287080 18288011 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0010133.1 MGP_C3HHeJ_G0008266.1 mouse_genomes_project 17 58792450 58792507 - Mir6978 miRNA miRNA MGP_C3HHeJ_T0045990.1 MGP_C3HHeJ_G0023114.1 mouse_genomes_project 17 25002372 25012233 + MGP_C3HHeJ_P0045990 Tmem8 protein_coding protein_coding MGP_C3HHeJ_T0045991.1 MGP_C3HHeJ_G0023114.1 mouse_genomes_project 17 25008420 25012233 + MGP_C3HHeJ_P0045991 Tmem8 protein_coding protein_coding MGP_C3HHeJ_T0006829.1 MGP_C3HHeJ_G0005619.1 mouse_genomes_project 17 24857009 24859664 + 1700022N22Rik lincRNA lincRNA MGP_C3HHeJ_T0017326.1 MGP_C3HHeJ_G0015101.1 mouse_genomes_project 17 19076303 19077329 + Vmn1r227 processed_transcript pseudogene MGP_C3HHeJ_T0045782.1 MGP_C3HHeJ_G0023063.1 mouse_genomes_project 17 23950142 23954651 + MGP_C3HHeJ_P0045782 Ptx4 protein_coding protein_coding MGP_C3HHeJ_T0100337.1 MGP_C3HHeJ_G0038531.1 mouse_genomes_project 17 24150902 24151039 + Gm25921 snoRNA snoRNA MGP_C3HHeJ_T0047795.1 MGP_C3HHeJ_G0023590.1 mouse_genomes_project 17 49402469 49417143 + MGP_C3HHeJ_P0047795 Trem3 protein_coding protein_coding MGP_C3HHeJ_T0013088.1 MGP_C3HHeJ_G0011192.1 mouse_genomes_project 17 33634582 33636994 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011329.1 MGP_C3HHeJ_G0009462.1 mouse_genomes_project 17 36309919 36310239 - Gm22453 misc_RNA misc_RNA MGP_C3HHeJ_T0013149.1 MGP_C3HHeJ_G0011253.1 mouse_genomes_project 17 80101986 80105019 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045384.1 MGP_C3HHeJ_G0022927.1 mouse_genomes_project 17 17928867 17967353 + MGP_C3HHeJ_P0045384 Vmn2r102 protein_coding protein_coding MGP_C3HHeJ_T0047824.1 MGP_C3HHeJ_G0023597.1 mouse_genomes_project 17 49580187 49587997 + MGP_C3HHeJ_P0047824 Oard1 protein_coding protein_coding MGP_C3HHeJ_T0047825.1 MGP_C3HHeJ_G0023597.1 mouse_genomes_project 17 49580253 49588009 + MGP_C3HHeJ_P0047825 Oard1 protein_coding protein_coding MGP_C3HHeJ_T0047899.1 MGP_C3HHeJ_G0023621.1 mouse_genomes_project 17 57104499 57159093 - MGP_C3HHeJ_P0047899 Pot1b protein_coding unknown_likely_coding MGP_C3HHeJ_T0101155.1 MGP_C3HHeJ_G0039313.1 mouse_genomes_project 17 91014196 91019689 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101156.1 MGP_C3HHeJ_G0039313.1 mouse_genomes_project 17 91019397 91019796 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0013130.1 MGP_C3HHeJ_G0011234.1 mouse_genomes_project 17 55108407 55108791 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045702.1 MGP_C3HHeJ_G0023046.1 mouse_genomes_project 17 23544027 23550162 + MGP_C3HHeJ_P0045702 Msrb1 protein_coding protein_coding MGP_C3HHeJ_T0045703.1 MGP_C3HHeJ_G0023046.1 mouse_genomes_project 17 23544067 23550155 + MGP_C3HHeJ_P0045703 Msrb1 protein_coding protein_coding MGP_C3HHeJ_T0045873.1 MGP_C3HHeJ_G0023087.1 mouse_genomes_project 17 24594479 24608873 + MGP_C3HHeJ_P0045873 Mslnl protein_coding protein_coding MGP_C3HHeJ_T0046495.1 MGP_C3HHeJ_G0023229.1 mouse_genomes_project 17 31863116 31870906 - MGP_C3HHeJ_P0046495 Pglyrp2 protein_coding protein_coding MGP_C3HHeJ_T0046496.1 MGP_C3HHeJ_G0023229.1 mouse_genomes_project 17 31863377 31873589 - MGP_C3HHeJ_P0046496 Pglyrp2 protein_coding protein_coding MGP_C3HHeJ_T0011325.1 MGP_C3HHeJ_G0009458.1 mouse_genomes_project 17 27518851 27519139 + Gm22146 misc_RNA misc_RNA MGP_C3HHeJ_T0047010.1 MGP_C3HHeJ_G0023345.1 mouse_genomes_project 17 34962353 34963836 - MGP_C3HHeJ_P0047010 Ly6g5b protein_coding protein_coding MGP_C3HHeJ_T0047011.1 MGP_C3HHeJ_G0023345.1 mouse_genomes_project 17 34962387 34963836 - MGP_C3HHeJ_P0047011 Ly6g5b protein_coding protein_coding MGP_C3HHeJ_T0013108.1 MGP_C3HHeJ_G0011212.1 mouse_genomes_project 17 37940365 37940738 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047903.1 MGP_C3HHeJ_G0023625.1 mouse_genomes_project 17 57399053 57411654 - MGP_C3HHeJ_P0047903 Zfp119b protein_coding protein_coding MGP_C3HHeJ_T0048389.1 MGP_C3HHeJ_G0023803.1 mouse_genomes_project 17 86796238 87079569 - MGP_C3HHeJ_P0048389 Thada protein_coding protein_coding MGP_C3HHeJ_T0047938.1 MGP_C3HHeJ_G0023641.1 mouse_genomes_project 17 57650744 57658835 - MGP_C3HHeJ_P0047938 Mydgf protein_coding protein_coding MGP_C3HHeJ_T0047939.1 MGP_C3HHeJ_G0023641.1 mouse_genomes_project 17 57653094 57658764 - Mydgf protein_coding retained_intron MGP_C3HHeJ_T0047940.1 MGP_C3HHeJ_G0023641.1 mouse_genomes_project 17 57654300 57658579 - Mydgf protein_coding processed_transcript MGP_C3HHeJ_T0048053.1 MGP_C3HHeJ_G0023686.1 mouse_genomes_project 17 58940331 59068461 + MGP_C3HHeJ_P0048053 Adgre1 protein_coding protein_coding MGP_C3HHeJ_T0048054.1 MGP_C3HHeJ_G0023686.1 mouse_genomes_project 17 58940359 59068455 + MGP_C3HHeJ_P0048054 Adgre1 protein_coding protein_coding MGP_C3HHeJ_T0045299.1 MGP_C3HHeJ_G0022894.1 mouse_genomes_project 17 12404070 12432889 - MGP_C3HHeJ_P0045299 Thbs2 protein_coding protein_coding MGP_C3HHeJ_T0046546.1 MGP_C3HHeJ_G0023251.1 mouse_genomes_project 17 32772360 32773315 + MGP_C3HHeJ_P0046546 Olfr63 protein_coding protein_coding MGP_C3HHeJ_T0047921.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57532325 57540309 - MGP_C3HHeJ_P0047921 Ubxn6 protein_coding protein_coding MGP_C3HHeJ_T0047922.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57533530 57540298 - Ubxn6 protein_coding retained_intron MGP_C3HHeJ_T0047923.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57533530 57537513 - Ubxn6 protein_coding retained_intron MGP_C3HHeJ_T0047924.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57533816 57534715 - Ubxn6 protein_coding retained_intron MGP_C3HHeJ_T0047925.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57534918 57537721 - Ubxn6 protein_coding processed_transcript MGP_C3HHeJ_T0047926.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57535398 57540129 - Ubxn6 protein_coding retained_intron MGP_C3HHeJ_T0047927.1 MGP_C3HHeJ_G0023634.1 mouse_genomes_project 17 57535924 57539828 - MGP_C3HHeJ_P0047927 Ubxn6 protein_coding protein_coding MGP_C3HHeJ_T0045416.1 MGP_C3HHeJ_G0022953.1 mouse_genomes_project 17 19788254 19802371 + MGP_C3HHeJ_P0045416 Zfp677 protein_coding protein_coding MGP_C3HHeJ_T0045417.1 MGP_C3HHeJ_G0022953.1 mouse_genomes_project 17 19788254 19802368 + MGP_C3HHeJ_P0045417 Zfp677 protein_coding protein_coding MGP_C3HHeJ_T0046879.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34667655 34678637 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046880.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34667671 34678637 - MGP_C3HHeJ_P0046880 Skiv2l protein_coding protein_coding MGP_C3HHeJ_T0046881.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34667676 34678619 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046882.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34667724 34678625 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046883.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34668957 34669556 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046884.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34669029 34671293 - MGP_C3HHeJ_P0046884 Skiv2l protein_coding protein_coding MGP_C3HHeJ_T0046885.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34669783 34672884 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046886.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34673454 34675621 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046887.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34673531 34675067 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046888.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34673667 34674459 - Skiv2l protein_coding retained_intron MGP_C3HHeJ_T0046889.1 MGP_C3HHeJ_G0023318.1 mouse_genomes_project 17 34674949 34678622 - MGP_C3HHeJ_P0046889 Skiv2l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048254.1 MGP_C3HHeJ_G0023750.1 mouse_genomes_project 17 76609680 76665091 + MGP_C3HHeJ_P0048254 Spast protein_coding protein_coding MGP_C3HHeJ_T0101780.1 MGP_C3HHeJ_G0039745.1 mouse_genomes_project 17 16038337 17267140 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047879.1 MGP_C3HHeJ_G0023612.1 mouse_genomes_project 17 54839387 54867316 + MGP_C3HHeJ_P0047879 Rab5a protein_coding protein_coding MGP_C3HHeJ_T0010105.1 MGP_C3HHeJ_G0008238.1 mouse_genomes_project 17 26341981 26342043 + Mir7217 miRNA miRNA MGP_C3HHeJ_T0098382.1 MGP_C3HHeJ_G0036588.1 mouse_genomes_project 17 75873980 75878608 - D630014O11Rik sense_intronic sense_intronic MGP_C3HHeJ_T0013115.1 MGP_C3HHeJ_G0011219.1 mouse_genomes_project 17 38235742 38236392 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100346.1 MGP_C3HHeJ_G0038540.1 mouse_genomes_project 17 56063971 56064108 + Gm26291 snoRNA snoRNA MGP_C3HHeJ_T0045380.1 MGP_C3HHeJ_G0022923.1 mouse_genomes_project 17 17249001 17547164 + MGP_C3HHeJ_P0045380 Vmn2r97 protein_coding protein_coding MGP_C3HHeJ_T0047653.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47671147 47685215 + MGP_C3HHeJ_P0047653 Cul7 protein_coding protein_coding MGP_C3HHeJ_T0047654.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47671373 47675658 + Cul7 protein_coding retained_intron MGP_C3HHeJ_T0047655.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47671382 47677937 + Cul7 protein_coding retained_intron MGP_C3HHeJ_T0047656.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47672233 47685215 + MGP_C3HHeJ_P0047656 Cul7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047657.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47673661 47676508 + Cul7 protein_coding processed_transcript MGP_C3HHeJ_T0047658.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47673703 47685215 + MGP_C3HHeJ_P0047658 Cul7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047659.1 MGP_C3HHeJ_G0023549.1 mouse_genomes_project 17 47682641 47685215 + Cul7 protein_coding retained_intron MGP_C3HHeJ_T0101779.1 MGP_C3HHeJ_G0039744.1 mouse_genomes_project 17 3532960 3575229 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047605.1 MGP_C3HHeJ_G0023535.1 mouse_genomes_project 17 47230106 47233226 + MGP_C3HHeJ_P0047605 Lrrc73 protein_coding protein_coding MGP_C3HHeJ_T0045692.1 MGP_C3HHeJ_G0023044.1 mouse_genomes_project 17 23529537 23530127 - Ndufb10 protein_coding retained_intron MGP_C3HHeJ_T0045693.1 MGP_C3HHeJ_G0023044.1 mouse_genomes_project 17 23529537 23530384 - Ndufb10 protein_coding retained_intron MGP_C3HHeJ_T0045694.1 MGP_C3HHeJ_G0023044.1 mouse_genomes_project 17 23529537 23531894 - Ndufb10 protein_coding retained_intron MGP_C3HHeJ_T0045695.1 MGP_C3HHeJ_G0023044.1 mouse_genomes_project 17 23529537 23531952 - MGP_C3HHeJ_P0045695 Ndufb10 protein_coding protein_coding MGP_C3HHeJ_T0045696.1 MGP_C3HHeJ_G0023044.1 mouse_genomes_project 17 23529882 23531886 - MGP_C3HHeJ_P0045696 Ndufb10 protein_coding protein_coding MGP_C3HHeJ_T0045697.1 MGP_C3HHeJ_G0023044.1 mouse_genomes_project 17 23530159 23531868 - Ndufb10 protein_coding processed_transcript MGP_C3HHeJ_T0047422.1 MGP_C3HHeJ_G0023482.1 mouse_genomes_project 17 41267791 41271912 + MGP_C3HHeJ_P0047422 Esp6 protein_coding protein_coding MGP_C3HHeJ_T0046307.1 MGP_C3HHeJ_G0023185.1 mouse_genomes_project 17 28414173 28456678 + MGP_C3HHeJ_P0046307 BC004004 protein_coding protein_coding MGP_C3HHeJ_T0046308.1 MGP_C3HHeJ_G0023185.1 mouse_genomes_project 17 28414228 28455318 + MGP_C3HHeJ_P0046308 BC004004 protein_coding protein_coding MGP_C3HHeJ_T0046309.1 MGP_C3HHeJ_G0023185.1 mouse_genomes_project 17 28414336 28437794 + BC004004 protein_coding retained_intron MGP_C3HHeJ_T0046310.1 MGP_C3HHeJ_G0023185.1 mouse_genomes_project 17 28419281 28455322 + MGP_C3HHeJ_P0046310 BC004004 protein_coding protein_coding MGP_C3HHeJ_T0046311.1 MGP_C3HHeJ_G0023185.1 mouse_genomes_project 17 28452107 28455322 + BC004004 protein_coding processed_transcript MGP_C3HHeJ_T0045364.1 MGP_C3HHeJ_G0022910.1 mouse_genomes_project 17 15787045 15798900 - MGP_C3HHeJ_P0045364 Has1 protein_coding protein_coding MGP_C3HHeJ_T0047385.1 MGP_C3HHeJ_G0023452.1 mouse_genomes_project 17 37924578 37929693 + MGP_C3HHeJ_P0047385 Olfr119 protein_coding protein_coding MGP_C3HHeJ_T0047244.1 MGP_C3HHeJ_G0023391.1 mouse_genomes_project 17 35963771 35976597 + MGP_C3HHeJ_P0047244 Gnl1 protein_coding protein_coding MGP_C3HHeJ_T0047245.1 MGP_C3HHeJ_G0023391.1 mouse_genomes_project 17 35965357 35966113 + Gnl1 protein_coding retained_intron MGP_C3HHeJ_T0101838.1 MGP_C3HHeJ_G0039803.1 mouse_genomes_project 17 36670319 36670545 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045624.1 MGP_C3HHeJ_G0023028.1 mouse_genomes_project 17 23258471 23260057 + MGP_C3HHeJ_P0045624 Bricd5 protein_coding protein_coding MGP_C3HHeJ_T0045625.1 MGP_C3HHeJ_G0023028.1 mouse_genomes_project 17 23258554 23259975 + MGP_C3HHeJ_P0045625 Bricd5 protein_coding protein_coding MGP_C3HHeJ_T0045714.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23702025 23708103 + MGP_C3HHeJ_P0045714 Spsb3 protein_coding protein_coding MGP_C3HHeJ_T0045715.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23702053 23705812 + MGP_C3HHeJ_P0045715 Spsb3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045716.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23702062 23707366 + MGP_C3HHeJ_P0045716 Spsb3 protein_coding protein_coding MGP_C3HHeJ_T0045717.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23702088 23708093 + MGP_C3HHeJ_P0045717 Spsb3 protein_coding protein_coding MGP_C3HHeJ_T0045718.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23702110 23708108 + Spsb3 protein_coding retained_intron MGP_C3HHeJ_T0045719.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23702500 23708105 + MGP_C3HHeJ_P0045719 Spsb3 protein_coding protein_coding MGP_C3HHeJ_T0045720.1 MGP_C3HHeJ_G0023053.1 mouse_genomes_project 17 23703197 23705656 + MGP_C3HHeJ_P0045720 Spsb3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0098075.1 MGP_C3HHeJ_G0036287.1 mouse_genomes_project 17 73647743 73647851 - Gm23115 rRNA rRNA MGP_C3HHeJ_T0045906.1 MGP_C3HHeJ_G0023097.1 mouse_genomes_project 17 24692710 24695436 - MGP_C3HHeJ_P0045906 Stub1 protein_coding protein_coding MGP_C3HHeJ_T0045112.1 MGP_C3HHeJ_G0022839.1 mouse_genomes_project 17 2659443 2928899 + MGP_C3HHeJ_P0045112 Zdhhc14 protein_coding protein_coding MGP_C3HHeJ_T0047496.1 MGP_C3HHeJ_G0023515.1 mouse_genomes_project 17 46446663 46469150 + MGP_C3HHeJ_P0047496 Tcte1 protein_coding protein_coding MGP_C3HHeJ_T0045153.1 MGP_C3HHeJ_G0022849.1 mouse_genomes_project 17 4135637 4180404 - MGP_C3HHeJ_P0045153 Ezr protein_coding protein_coding MGP_C3HHeJ_T0045154.1 MGP_C3HHeJ_G0022849.1 mouse_genomes_project 17 4138433 4140420 - Ezr protein_coding processed_transcript MGP_C3HHeJ_T0047698.1 MGP_C3HHeJ_G0023567.1 mouse_genomes_project 17 48454177 48461740 + MGP_C3HHeJ_P0047698 Guca1b protein_coding protein_coding MGP_C3HHeJ_T0047699.1 MGP_C3HHeJ_G0023567.1 mouse_genomes_project 17 48454188 48460866 + MGP_C3HHeJ_P0047699 Guca1b protein_coding protein_coding MGP_C3HHeJ_T0045816.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24103096 24117267 - MGP_C3HHeJ_P0045816 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045817.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24103121 24115702 - MGP_C3HHeJ_P0045817 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045818.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24103123 24117582 - MGP_C3HHeJ_P0045818 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045819.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24105196 24106063 - Ube2i protein_coding retained_intron MGP_C3HHeJ_T0045820.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24108865 24116186 - MGP_C3HHeJ_P0045820 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045821.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24110707 24117259 - MGP_C3HHeJ_P0045821 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045822.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24111552 24115919 - MGP_C3HHeJ_P0045822 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045823.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24111701 24115474 - MGP_C3HHeJ_P0045823 Ube2i protein_coding protein_coding MGP_C3HHeJ_T0045824.1 MGP_C3HHeJ_G0023072.1 mouse_genomes_project 17 24114981 24115578 - Ube2i protein_coding processed_transcript MGP_C3HHeJ_T0047565.1 MGP_C3HHeJ_G0023528.1 mouse_genomes_project 17 47092155 47106845 - MGP_C3HHeJ_P0047565 Rsph9 protein_coding protein_coding MGP_C3HHeJ_T0047569.1 MGP_C3HHeJ_G0023528.1 mouse_genomes_project 17 47099391 47114066 - MGP_C3HHeJ_P0047569 Rsph9 protein_coding protein_coding MGP_C3HHeJ_T0047570.1 MGP_C3HHeJ_G0023528.1 mouse_genomes_project 17 47104518 47106810 - Rsph9 protein_coding retained_intron MGP_C3HHeJ_T0047538.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46595106 46624968 - MGP_C3HHeJ_P0047538 Tmem63b protein_coding protein_coding MGP_C3HHeJ_T0047539.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46597943 46600162 - Tmem63b protein_coding retained_intron MGP_C3HHeJ_T0047540.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46599035 46601428 - Tmem63b protein_coding retained_intron MGP_C3HHeJ_T0047541.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46602689 46624673 - MGP_C3HHeJ_P0047541 Tmem63b protein_coding protein_coding MGP_C3HHeJ_T0047542.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46604914 46625608 - MGP_C3HHeJ_P0047542 Tmem63b protein_coding protein_coding MGP_C3HHeJ_T0047543.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46608646 46619316 - MGP_C3HHeJ_P0047543 Tmem63b protein_coding protein_coding MGP_C3HHeJ_T0047544.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46608876 46624838 - MGP_C3HHeJ_P0047544 Tmem63b protein_coding protein_coding MGP_C3HHeJ_T0047545.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46617656 46624821 - MGP_C3HHeJ_P0047545 Tmem63b protein_coding protein_coding MGP_C3HHeJ_T0047546.1 MGP_C3HHeJ_G0023523.1 mouse_genomes_project 17 46624968 46625590 - Tmem63b protein_coding processed_transcript MGP_C3HHeJ_T0047001.1 MGP_C3HHeJ_G0023342.1 mouse_genomes_project 17 34921601 34927751 - MGP_C3HHeJ_P0047001 Ly6g6f protein_coding protein_coding MGP_C3HHeJ_T0048317.1 MGP_C3HHeJ_G0023770.1 mouse_genomes_project 17 81383185 81396056 + MGP_C3HHeJ_P0048317 Ndufaf7 protein_coding protein_coding MGP_C3HHeJ_T0011331.1 MGP_C3HHeJ_G0009464.1 mouse_genomes_project 17 37148977 37149225 + Gm22388 misc_RNA misc_RNA MGP_C3HHeJ_T0047026.1 MGP_C3HHeJ_G0023349.1 mouse_genomes_project 17 34980126 34983180 - MGP_C3HHeJ_P0047026 Apom protein_coding protein_coding MGP_C3HHeJ_T0045891.1 MGP_C3HHeJ_G0023093.1 mouse_genomes_project 17 24654916 24657391 - MGP_C3HHeJ_P0045891 Metrn protein_coding protein_coding MGP_C3HHeJ_T0045892.1 MGP_C3HHeJ_G0023093.1 mouse_genomes_project 17 24655292 24657482 - MGP_C3HHeJ_P0045892 Metrn protein_coding protein_coding MGP_C3HHeJ_T0000959.1 MGP_C3HHeJ_G0000896.1 mouse_genomes_project 17 53166924 53169831 + TEC TEC MGP_C3HHeJ_T0047320.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37116029 37122625 - H2-M5 protein_coding retained_intron MGP_C3HHeJ_T0047321.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37117051 37122265 - MGP_C3HHeJ_P0047321 H2-M5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047322.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37117051 37122055 - MGP_C3HHeJ_P0047322 H2-M5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047323.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37119947 37122592 - MGP_C3HHeJ_P0047323 H2-M5 protein_coding protein_coding MGP_C3HHeJ_T0047324.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37120207 37122281 - MGP_C3HHeJ_P0047324 H2-M5 protein_coding protein_coding MGP_C3HHeJ_T0047325.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37120207 37122281 - MGP_C3HHeJ_P0047325 H2-M5 protein_coding protein_coding MGP_C3HHeJ_T0047326.1 MGP_C3HHeJ_G0023419.1 mouse_genomes_project 17 37120589 37122138 - MGP_C3HHeJ_P0047326 H2-M5 protein_coding protein_coding MGP_C3HHeJ_T0045218.1 MGP_C3HHeJ_G0022872.1 mouse_genomes_project 17 7929827 8378560 - MGP_C3HHeJ_P0045218 Pacrg protein_coding protein_coding MGP_C3HHeJ_T0045219.1 MGP_C3HHeJ_G0022872.1 mouse_genomes_project 17 8110989 8165527 - Pacrg protein_coding processed_transcript MGP_C3HHeJ_T0003659.1 MGP_C3HHeJ_G0003298.1 mouse_genomes_project 17 26057899 26059669 - Itpr3os antisense antisense MGP_C3HHeJ_T0047931.1 MGP_C3HHeJ_G0023637.1 mouse_genomes_project 17 57584393 57590389 - MGP_C3HHeJ_P0047931 Plin5 protein_coding protein_coding MGP_C3HHeJ_T0047932.1 MGP_C3HHeJ_G0023637.1 mouse_genomes_project 17 57584399 57590091 - MGP_C3HHeJ_P0047932 Plin5 protein_coding protein_coding MGP_C3HHeJ_T0047933.1 MGP_C3HHeJ_G0023637.1 mouse_genomes_project 17 57584821 57590386 - MGP_C3HHeJ_P0047933 Plin5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047551.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46981972 46998177 - MGP_C3HHeJ_P0047551 Vegfa protein_coding protein_coding MGP_C3HHeJ_T0047552.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46981972 46997623 - MGP_C3HHeJ_P0047552 Vegfa protein_coding protein_coding MGP_C3HHeJ_T0047553.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46981975 46998185 - MGP_C3HHeJ_P0047553 Vegfa protein_coding protein_coding MGP_C3HHeJ_T0047554.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983453 46989858 - Vegfa protein_coding retained_intron MGP_C3HHeJ_T0047555.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983536 46998177 - MGP_C3HHeJ_P0047555 Vegfa protein_coding protein_coding MGP_C3HHeJ_T0047556.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983599 46989875 - Vegfa protein_coding retained_intron MGP_C3HHeJ_T0047557.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983705 46986366 - Vegfa protein_coding retained_intron MGP_C3HHeJ_T0047558.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983824 46997164 - MGP_C3HHeJ_P0047558 Vegfa protein_coding protein_coding MGP_C3HHeJ_T0047559.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983826 46989796 - Vegfa protein_coding retained_intron MGP_C3HHeJ_T0047560.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46983851 46997164 - MGP_C3HHeJ_P0047560 Vegfa protein_coding protein_coding MGP_C3HHeJ_T0047561.1 MGP_C3HHeJ_G0023526.1 mouse_genomes_project 17 46990189 46997164 - Vegfa protein_coding retained_intron MGP_C3HHeJ_T0048194.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73311134 73367159 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048195.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73312130 73364334 + MGP_C3HHeJ_P0048195 Lpin2 protein_coding protein_coding MGP_C3HHeJ_T0048196.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73312297 73353435 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048197.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73312552 73381887 + MGP_C3HHeJ_P0048197 Lpin2 protein_coding protein_coding MGP_C3HHeJ_T0048198.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73335576 73363534 + MGP_C3HHeJ_P0048198 Lpin2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048199.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73335598 73380312 + MGP_C3HHeJ_P0048199 Lpin2 protein_coding protein_coding MGP_C3HHeJ_T0048200.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73363461 73370135 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048201.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73370713 73371452 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048202.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73370723 73378503 + MGP_C3HHeJ_P0048202 Lpin2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048203.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73372653 73376878 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048204.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73372754 73375531 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048205.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73374447 73377957 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0048206.1 MGP_C3HHeJ_G0023728.1 mouse_genomes_project 17 73378080 73379385 + Lpin2 protein_coding retained_intron MGP_C3HHeJ_T0045425.1 MGP_C3HHeJ_G0022959.1 mouse_genomes_project 17 20061058 20067040 + MGP_C3HHeJ_P0045425 Zfp983 protein_coding protein_coding MGP_C3HHeJ_T0000954.1 MGP_C3HHeJ_G0000891.1 mouse_genomes_project 17 53078234 53081390 - TEC TEC MGP_C3HHeJ_T0045514.1 MGP_C3HHeJ_G0022996.1 mouse_genomes_project 17 22481405 22491882 - MGP_C3HHeJ_P0045514 Flywch2 protein_coding protein_coding MGP_C3HHeJ_T0045515.1 MGP_C3HHeJ_G0022996.1 mouse_genomes_project 17 22481448 22484285 - MGP_C3HHeJ_P0045515 Flywch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045516.1 MGP_C3HHeJ_G0022996.1 mouse_genomes_project 17 22481481 22491853 - MGP_C3HHeJ_P0045516 Flywch2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0003709.1 MGP_C3HHeJ_G0003335.1 mouse_genomes_project 17 60601825 60618659 + Nudt12os antisense antisense MGP_C3HHeJ_T0003710.1 MGP_C3HHeJ_G0003335.1 mouse_genomes_project 17 60601849 60631512 + Nudt12os antisense antisense MGP_C3HHeJ_T0003711.1 MGP_C3HHeJ_G0003335.1 mouse_genomes_project 17 60623839 60631260 + Nudt12os antisense antisense MGP_C3HHeJ_T0045319.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242402 13250540 + MGP_C3HHeJ_P0045319 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045320.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242402 13264049 + MGP_C3HHeJ_P0045320 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045321.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242402 13276290 + MGP_C3HHeJ_P0045321 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045322.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242415 13253392 + MGP_C3HHeJ_P0045322 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045323.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242424 13264049 + MGP_C3HHeJ_P0045323 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045324.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242426 13253297 + MGP_C3HHeJ_P0045324 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045325.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242436 13260330 + MGP_C3HHeJ_P0045325 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045326.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242442 13250382 + MGP_C3HHeJ_P0045326 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045327.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13242474 13264049 + MGP_C3HHeJ_P0045327 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045328.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13250517 13263490 + MGP_C3HHeJ_P0045328 Tbp protein_coding protein_coding MGP_C3HHeJ_T0045329.1 MGP_C3HHeJ_G0022902.1 mouse_genomes_project 17 13261441 13263557 + Tbp protein_coding retained_intron MGP_C3HHeJ_T0048065.1 MGP_C3HHeJ_G0023692.1 mouse_genomes_project 17 64426489 64717399 - MGP_C3HHeJ_P0048065 Efna5 protein_coding protein_coding MGP_C3HHeJ_T0048066.1 MGP_C3HHeJ_G0023692.1 mouse_genomes_project 17 64429625 64717226 - MGP_C3HHeJ_P0048066 Efna5 protein_coding protein_coding MGP_C3HHeJ_T0045259.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10497115 10499493 + Tcp1 protein_coding processed_transcript MGP_C3HHeJ_T0045260.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10497853 10499758 + MGP_C3HHeJ_P0045260 Tcp1 protein_coding protein_coding MGP_C3HHeJ_T0045261.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10497863 10501607 + Tcp1 protein_coding retained_intron MGP_C3HHeJ_T0045262.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10497863 10505921 + Tcp1 protein_coding retained_intron MGP_C3HHeJ_T0045263.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10497889 10500937 + Tcp1 protein_coding retained_intron MGP_C3HHeJ_T0045264.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10497980 10506131 + MGP_C3HHeJ_P0045264 Tcp1 protein_coding protein_coding MGP_C3HHeJ_T0045265.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10501051 10502019 + Tcp1 protein_coding retained_intron MGP_C3HHeJ_T0045266.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10501495 10504111 + Tcp1 protein_coding retained_intron MGP_C3HHeJ_T0045267.1 MGP_C3HHeJ_G0022885.1 mouse_genomes_project 17 10501659 10502527 + Tcp1 protein_coding retained_intron MGP_C3HHeJ_T0048374.1 MGP_C3HHeJ_G0023798.1 mouse_genomes_project 17 86062446 86075801 - MGP_C3HHeJ_P0048374 Cox7a2l protein_coding protein_coding MGP_C3HHeJ_T0048375.1 MGP_C3HHeJ_G0023798.1 mouse_genomes_project 17 86062446 86075801 - MGP_C3HHeJ_P0048375 Cox7a2l protein_coding protein_coding MGP_C3HHeJ_T0045940.1 MGP_C3HHeJ_G0023103.1 mouse_genomes_project 17 24739254 24740951 + MGP_C3HHeJ_P0045940 Mettl26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045941.1 MGP_C3HHeJ_G0023103.1 mouse_genomes_project 17 24739290 24740960 + MGP_C3HHeJ_P0045941 Mettl26 protein_coding protein_coding MGP_C3HHeJ_T0045942.1 MGP_C3HHeJ_G0023103.1 mouse_genomes_project 17 24739291 24740960 + MGP_C3HHeJ_P0045942 Mettl26 protein_coding protein_coding MGP_C3HHeJ_T0045943.1 MGP_C3HHeJ_G0023103.1 mouse_genomes_project 17 24739320 24749821 + MGP_C3HHeJ_P0045943 Mettl26 protein_coding protein_coding MGP_C3HHeJ_T0045944.1 MGP_C3HHeJ_G0023103.1 mouse_genomes_project 17 24739320 24740788 + MGP_C3HHeJ_P0045944 Mettl26 protein_coding protein_coding MGP_C3HHeJ_T0045202.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 5978680 6390805 + MGP_C3HHeJ_P0045202 Pde10a protein_coding protein_coding MGP_C3HHeJ_T0045203.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 5980006 6450650 + MGP_C3HHeJ_P0045203 Pde10a protein_coding protein_coding MGP_C3HHeJ_T0045206.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 6262768 6366343 + Pde10a protein_coding retained_intron MGP_C3HHeJ_T0045207.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 6262854 6454799 + MGP_C3HHeJ_P0045207 Pde10a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045208.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 6263154 6454807 + MGP_C3HHeJ_P0045208 Pde10a protein_coding protein_coding MGP_C3HHeJ_T0045209.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 6311904 6450554 + MGP_C3HHeJ_P0045209 Pde10a protein_coding protein_coding MGP_C3HHeJ_T0045210.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 6360444 6397909 + Pde10a protein_coding processed_transcript MGP_C3HHeJ_T0045211.1 MGP_C3HHeJ_G0022867.1 mouse_genomes_project 17 6391521 6452442 + MGP_C3HHeJ_P0045211 Pde10a protein_coding protein_coding MGP_C3HHeJ_T0006899.1 MGP_C3HHeJ_G0005670.1 mouse_genomes_project 17 81802509 81805837 + Gm17315 lincRNA lincRNA MGP_C3HHeJ_T0101821.1 MGP_C3HHeJ_G0039786.1 mouse_genomes_project 17 35165438 35167550 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006832.1 MGP_C3HHeJ_G0005622.1 mouse_genomes_project 17 26162566 26164606 + Gm26724 lincRNA lincRNA MGP_C3HHeJ_T0047472.1 MGP_C3HHeJ_G0023508.1 mouse_genomes_project 17 44969834 44979319 - MGP_C3HHeJ_P0047472 Enpp4 protein_coding protein_coding MGP_C3HHeJ_T0047473.1 MGP_C3HHeJ_G0023508.1 mouse_genomes_project 17 44969842 44979274 - MGP_C3HHeJ_P0047473 Enpp4 protein_coding protein_coding MGP_C3HHeJ_T0046608.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33323687 33330243 - MGP_C3HHeJ_P0046608 Rps28 protein_coding protein_coding MGP_C3HHeJ_T0046611.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33328789 33330313 - MGP_C3HHeJ_P0046611 Rps28 protein_coding protein_coding MGP_C3HHeJ_T0046612.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33328790 33330097 - MGP_C3HHeJ_P0046612 Rps28 protein_coding protein_coding MGP_C3HHeJ_T0046613.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33328803 33330216 - Rps28 protein_coding processed_transcript MGP_C3HHeJ_T0046614.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33328803 33330313 - MGP_C3HHeJ_P0046614 Rps28 protein_coding protein_coding MGP_C3HHeJ_T0046615.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33328805 33330227 - MGP_C3HHeJ_P0046615 Rps28 protein_coding protein_coding MGP_C3HHeJ_T0046616.1 MGP_C3HHeJ_G0023264.1 mouse_genomes_project 17 33329339 33330235 - Rps28 protein_coding retained_intron MGP_C3HHeJ_T0047982.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58127210 58138914 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047983.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58127359 58149305 + MGP_C3HHeJ_P0047983 Safb protein_coding protein_coding MGP_C3HHeJ_T0047984.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58127367 58136111 + MGP_C3HHeJ_P0047984 Safb protein_coding protein_coding MGP_C3HHeJ_T0047985.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58127444 58149380 + MGP_C3HHeJ_P0047985 Safb protein_coding protein_coding MGP_C3HHeJ_T0047986.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58131225 58144323 + MGP_C3HHeJ_P0047986 Safb protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047987.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58136904 58138902 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047988.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58140160 58149366 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047989.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58144479 58147494 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047990.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58146055 58147629 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047991.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58147444 58148739 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047992.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58148307 58149380 + Safb protein_coding retained_intron MGP_C3HHeJ_T0047993.1 MGP_C3HHeJ_G0023652.1 mouse_genomes_project 17 58148825 58149360 + Safb protein_coding retained_intron MGP_C3HHeJ_T0101843.1 MGP_C3HHeJ_G0039808.1 mouse_genomes_project 17 36809412 36810538 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0101844.1 MGP_C3HHeJ_G0039809.1 mouse_genomes_project 17 37098564 37100759 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045369.1 MGP_C3HHeJ_G0022914.1 mouse_genomes_project 17 15884936 15885845 - MGP_C3HHeJ_P0045369 Gm7535 protein_coding protein_coding MGP_C3HHeJ_T0013063.1 MGP_C3HHeJ_G0011167.1 mouse_genomes_project 17 6017323 6021926 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100331.1 MGP_C3HHeJ_G0038525.1 mouse_genomes_project 17 10500963 10501101 + Gm26130 snoRNA snoRNA MGP_C3HHeJ_T0013100.1 MGP_C3HHeJ_G0011204.1 mouse_genomes_project 17 36316640 36316953 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101826.1 MGP_C3HHeJ_G0039791.1 mouse_genomes_project 17 36216803 36221653 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047796.1 MGP_C3HHeJ_G0023591.1 mouse_genomes_project 17 49422595 49433658 + MGP_C3HHeJ_P0047796 Treml4 protein_coding protein_coding MGP_C3HHeJ_T0047797.1 MGP_C3HHeJ_G0023591.1 mouse_genomes_project 17 49422637 49432791 + MGP_C3HHeJ_P0047797 Treml4 protein_coding protein_coding MGP_C3HHeJ_T0047798.1 MGP_C3HHeJ_G0023591.1 mouse_genomes_project 17 49422637 49432791 + MGP_C3HHeJ_P0047798 Treml4 protein_coding protein_coding MGP_C3HHeJ_T0047799.1 MGP_C3HHeJ_G0023591.1 mouse_genomes_project 17 49422641 49432964 + MGP_C3HHeJ_P0047799 Treml4 protein_coding protein_coding MGP_C3HHeJ_T0047800.1 MGP_C3HHeJ_G0023591.1 mouse_genomes_project 17 49422673 49432798 + MGP_C3HHeJ_P0047800 Treml4 protein_coding protein_coding MGP_C3HHeJ_T0047801.1 MGP_C3HHeJ_G0023591.1 mouse_genomes_project 17 49430736 49432810 + Treml4 protein_coding retained_intron MGP_C3HHeJ_T0006913.1 MGP_C3HHeJ_G0005680.1 mouse_genomes_project 17 97902139 97903828 + Gm26734 lincRNA lincRNA MGP_C3HHeJ_T0045663.1 MGP_C3HHeJ_G0023035.1 mouse_genomes_project 17 23437150 23449537 - MGP_C3HHeJ_P0045663 Slc9a3r2 protein_coding protein_coding MGP_C3HHeJ_T0045664.1 MGP_C3HHeJ_G0023035.1 mouse_genomes_project 17 23437150 23444224 - MGP_C3HHeJ_P0045664 Slc9a3r2 protein_coding protein_coding MGP_C3HHeJ_T0047671.1 MGP_C3HHeJ_G0023556.1 mouse_genomes_project 17 47764746 47783037 - MGP_C3HHeJ_P0047671 Cnpy3 protein_coding protein_coding MGP_C3HHeJ_T0047672.1 MGP_C3HHeJ_G0023556.1 mouse_genomes_project 17 47764797 47783020 - MGP_C3HHeJ_P0047672 Cnpy3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047673.1 MGP_C3HHeJ_G0023556.1 mouse_genomes_project 17 47765694 47766673 - Cnpy3 protein_coding retained_intron MGP_C3HHeJ_T0047674.1 MGP_C3HHeJ_G0023556.1 mouse_genomes_project 17 47776935 47783018 - MGP_C3HHeJ_P0047674 Cnpy3 protein_coding protein_coding MGP_C3HHeJ_T0047675.1 MGP_C3HHeJ_G0023556.1 mouse_genomes_project 17 47777167 47783000 - Cnpy3 protein_coding retained_intron MGP_C3HHeJ_T0048152.1 MGP_C3HHeJ_G0023721.1 mouse_genomes_project 17 71510348 71562260 + MGP_C3HHeJ_P0048152 Akain1 protein_coding protein_coding MGP_C3HHeJ_T0097874.1 MGP_C3HHeJ_G0036086.1 mouse_genomes_project 17 32920100 32921470 + pseudogene pseudogene MGP_C3HHeJ_T0045988.1 MGP_C3HHeJ_G0023113.1 mouse_genomes_project 17 24977372 24982242 - MGP_C3HHeJ_P0045988 Nme4 protein_coding protein_coding MGP_C3HHeJ_T0045989.1 MGP_C3HHeJ_G0023113.1 mouse_genomes_project 17 24980148 24982207 - Nme4 protein_coding retained_intron MGP_C3HHeJ_T0047433.1 MGP_C3HHeJ_G0023489.1 mouse_genomes_project 17 41637990 41645029 - MGP_C3HHeJ_P0047433 Glyatl3 protein_coding protein_coding MGP_C3HHeJ_T0100342.1 MGP_C3HHeJ_G0038536.1 mouse_genomes_project 17 35098351 35098428 + Gm22589 snoRNA snoRNA MGP_C3HHeJ_T0048328.1 MGP_C3HHeJ_G0023774.1 mouse_genomes_project 17 82080690 82142485 + MGP_C3HHeJ_P0048328 Rmdn2 protein_coding protein_coding MGP_C3HHeJ_T0048329.1 MGP_C3HHeJ_G0023774.1 mouse_genomes_project 17 82087115 82142019 + MGP_C3HHeJ_P0048329 Rmdn2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045159.1 MGP_C3HHeJ_G0022852.1 mouse_genomes_project 17 4410050 4482137 + MGP_C3HHeJ_P0045159 Gm1604b protein_coding protein_coding MGP_C3HHeJ_T0045795.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24024556 24072401 + MGP_C3HHeJ_P0045795 protein_coding protein_coding MGP_C3HHeJ_T0045796.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24025079 24072401 + MGP_C3HHeJ_P0045796 protein_coding protein_coding MGP_C3HHeJ_T0045797.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24025620 24042851 + MGP_C3HHeJ_P0045797 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045798.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24047774 24050467 + protein_coding retained_intron MGP_C3HHeJ_T0045799.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24060572 24067428 + MGP_C3HHeJ_P0045799 protein_coding protein_coding MGP_C3HHeJ_T0045800.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24060615 24072400 + MGP_C3HHeJ_P0045800 protein_coding protein_coding MGP_C3HHeJ_T0045802.1 MGP_C3HHeJ_G0023067.1 mouse_genomes_project 17 24060812 24069825 + MGP_C3HHeJ_P0045802 protein_coding protein_coding MGP_C3HHeJ_T0006911.1 MGP_C3HHeJ_G0005679.1 mouse_genomes_project 17 97813809 97902033 - lincRNA lincRNA MGP_C3HHeJ_T0006912.1 MGP_C3HHeJ_G0005679.1 mouse_genomes_project 17 97815115 97818407 - lincRNA lincRNA MGP_C3HHeJ_T0048309.1 MGP_C3HHeJ_G0023767.1 mouse_genomes_project 17 81327148 81349795 - MGP_C3HHeJ_P0048309 Sult6b1 protein_coding protein_coding MGP_C3HHeJ_T0048310.1 MGP_C3HHeJ_G0023767.1 mouse_genomes_project 17 81328107 81337903 - Sult6b1 protein_coding processed_transcript MGP_C3HHeJ_T0048311.1 MGP_C3HHeJ_G0023767.1 mouse_genomes_project 17 81328276 81349702 - MGP_C3HHeJ_P0048311 Sult6b1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048312.1 MGP_C3HHeJ_G0023767.1 mouse_genomes_project 17 81328276 81349702 - MGP_C3HHeJ_P0048312 Sult6b1 protein_coding protein_coding MGP_C3HHeJ_T0006808.1 MGP_C3HHeJ_G0005601.1 mouse_genomes_project 17 4195976 4225558 - Gm2885 lincRNA lincRNA MGP_C3HHeJ_T0013067.1 MGP_C3HHeJ_G0011171.1 mouse_genomes_project 17 9100481 9100775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101808.1 MGP_C3HHeJ_G0039773.1 mouse_genomes_project 17 33398021 33400948 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047741.1 MGP_C3HHeJ_G0023577.1 mouse_genomes_project 17 48784292 48785831 - MGP_C3HHeJ_P0047741 Tomm6 protein_coding protein_coding MGP_C3HHeJ_T0047743.1 MGP_C3HHeJ_G0023577.1 mouse_genomes_project 17 48784386 48786034 - Tomm6 protein_coding retained_intron MGP_C3HHeJ_T0047744.1 MGP_C3HHeJ_G0023577.1 mouse_genomes_project 17 48784386 48785716 - MGP_C3HHeJ_P0047744 Tomm6 protein_coding protein_coding MGP_C3HHeJ_T0101834.1 MGP_C3HHeJ_G0039799.1 mouse_genomes_project 17 36517254 36519185 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047469.1 MGP_C3HHeJ_G0023507.1 mouse_genomes_project 17 44952385 44960121 + MGP_C3HHeJ_P0047469 Enpp5 protein_coding protein_coding MGP_C3HHeJ_T0047470.1 MGP_C3HHeJ_G0023507.1 mouse_genomes_project 17 44952417 44960112 + MGP_C3HHeJ_P0047470 Enpp5 protein_coding protein_coding MGP_C3HHeJ_T0047471.1 MGP_C3HHeJ_G0023507.1 mouse_genomes_project 17 44952451 44960121 + MGP_C3HHeJ_P0047471 Enpp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0101811.1 MGP_C3HHeJ_G0039776.1 mouse_genomes_project 17 33931963 33934530 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047876.1 MGP_C3HHeJ_G0023610.1 mouse_genomes_project 17 53937560 54333362 + MGP_C3HHeJ_P0047876 Kcnh8 protein_coding protein_coding MGP_C3HHeJ_T0047877.1 MGP_C3HHeJ_G0023610.1 mouse_genomes_project 17 54300287 54332547 + Kcnh8 protein_coding retained_intron MGP_C3HHeJ_T0045622.1 MGP_C3HHeJ_G0023027.1 mouse_genomes_project 17 23258137 23263657 - MGP_C3HHeJ_P0045622 Mlst8 protein_coding protein_coding MGP_C3HHeJ_T0045623.1 MGP_C3HHeJ_G0023027.1 mouse_genomes_project 17 23258137 23263657 - MGP_C3HHeJ_P0045623 Mlst8 protein_coding protein_coding MGP_C3HHeJ_T0045621.1 MGP_C3HHeJ_G0023026.1 mouse_genomes_project 17 23255062 23256181 + MGP_C3HHeJ_P0045621 Pgp protein_coding protein_coding MGP_C3HHeJ_T0097876.1 MGP_C3HHeJ_G0036088.1 mouse_genomes_project 17 80590315 80590674 - pseudogene pseudogene MGP_C3HHeJ_T0048356.1 MGP_C3HHeJ_G0023789.1 mouse_genomes_project 17 83089531 83239001 - MGP_C3HHeJ_P0048356 Map4k3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048357.1 MGP_C3HHeJ_G0023789.1 mouse_genomes_project 17 83089534 83239205 - MGP_C3HHeJ_P0048357 Map4k3 protein_coding protein_coding MGP_C3HHeJ_T0048358.1 MGP_C3HHeJ_G0023789.1 mouse_genomes_project 17 83089534 83239205 - MGP_C3HHeJ_P0048358 Map4k3 protein_coding protein_coding MGP_C3HHeJ_T0006890.1 MGP_C3HHeJ_G0005663.1 mouse_genomes_project 17 71486472 71510327 - A930029G22Rik lincRNA lincRNA MGP_C3HHeJ_T0045388.1 MGP_C3HHeJ_G0022931.1 mouse_genomes_project 17 18518619 18549820 - MGP_C3HHeJ_P0045388 Vmn2r105 protein_coding protein_coding MGP_C3HHeJ_T0047340.1 MGP_C3HHeJ_G0023421.1 mouse_genomes_project 17 37144594 37157151 - MGP_C3HHeJ_P0047340 Mog protein_coding protein_coding MGP_C3HHeJ_T0047341.1 MGP_C3HHeJ_G0023421.1 mouse_genomes_project 17 37145352 37156952 - MGP_C3HHeJ_P0047341 Mog protein_coding protein_coding MGP_C3HHeJ_T0100343.1 MGP_C3HHeJ_G0038537.1 mouse_genomes_project 17 35102851 35102927 + Gm25128 snoRNA snoRNA MGP_C3HHeJ_T0017369.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88288986 88303574 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017370.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88290269 88306604 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017371.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88295775 88306597 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017372.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88296342 88306630 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017373.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88297786 88306572 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017374.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88298728 88306507 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017375.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88299473 88306617 - Six3os1 processed_transcript retained_intron MGP_C3HHeJ_T0017376.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88299856 88306455 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017377.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88299856 88306453 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017378.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88301109 88306507 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017379.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88301437 88304472 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017380.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88301920 88306305 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0017381.1 MGP_C3HHeJ_G0015118.1 mouse_genomes_project 17 88301921 88306590 - Six3os1 processed_transcript antisense MGP_C3HHeJ_T0047056.1 MGP_C3HHeJ_G0023353.1 mouse_genomes_project 17 35040253 35043562 - MGP_C3HHeJ_P0047056 Lst1 protein_coding protein_coding MGP_C3HHeJ_T0046676.1 MGP_C3HHeJ_G0023275.1 mouse_genomes_project 17 33494447 33505043 + MGP_C3HHeJ_P0046676 Vps52 protein_coding protein_coding MGP_C3HHeJ_T0046677.1 MGP_C3HHeJ_G0023275.1 mouse_genomes_project 17 33494550 33504258 + MGP_C3HHeJ_P0046677 Vps52 protein_coding protein_coding MGP_C3HHeJ_T0046678.1 MGP_C3HHeJ_G0023275.1 mouse_genomes_project 17 33496688 33499150 + Vps52 protein_coding retained_intron MGP_C3HHeJ_T0046679.1 MGP_C3HHeJ_G0023275.1 mouse_genomes_project 17 33497666 33499179 + Vps52 protein_coding retained_intron MGP_C3HHeJ_T0046680.1 MGP_C3HHeJ_G0023275.1 mouse_genomes_project 17 33499789 33501489 + Vps52 protein_coding retained_intron MGP_C3HHeJ_T0046681.1 MGP_C3HHeJ_G0023275.1 mouse_genomes_project 17 33501056 33504325 + Vps52 protein_coding retained_intron MGP_C3HHeJ_T0100334.1 MGP_C3HHeJ_G0038528.1 mouse_genomes_project 17 23319527 23319605 + Snord60 snoRNA snoRNA MGP_C3HHeJ_T0011342.1 MGP_C3HHeJ_G0009475.1 mouse_genomes_project 17 88301618 88301844 + Gm27801 misc_RNA misc_RNA MGP_C3HHeJ_T0013112.1 MGP_C3HHeJ_G0011216.1 mouse_genomes_project 17 38199327 38203025 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010093.1 MGP_C3HHeJ_G0008226.1 mouse_genomes_project 17 23391951 23392045 + Gm24589 miRNA miRNA MGP_C3HHeJ_T0045269.1 MGP_C3HHeJ_G0022887.1 mouse_genomes_project 17 10562980 10589426 - MGP_C3HHeJ_P0045269 protein_coding protein_coding MGP_C3HHeJ_T0045270.1 MGP_C3HHeJ_G0022887.1 mouse_genomes_project 17 10562983 10589188 - MGP_C3HHeJ_P0045270 protein_coding protein_coding MGP_C3HHeJ_T0045271.1 MGP_C3HHeJ_G0022887.1 mouse_genomes_project 17 10577543 10583229 - MGP_C3HHeJ_P0045271 protein_coding protein_coding MGP_C3HHeJ_T0045272.1 MGP_C3HHeJ_G0022887.1 mouse_genomes_project 17 10578482 10580962 - protein_coding processed_transcript MGP_C3HHeJ_T0047115.1 MGP_C3HHeJ_G0023374.1 mouse_genomes_project 17 35600015 35608730 - MGP_C3HHeJ_P0047115 Dpcr1 protein_coding protein_coding MGP_C3HHeJ_T0047444.1 MGP_C3HHeJ_G0023496.1 mouse_genomes_project 17 43564912 43625817 - MGP_C3HHeJ_P0047444 Cd2ap protein_coding unknown_likely_coding MGP_C3HHeJ_T0048316.1 MGP_C3HHeJ_G0023769.1 mouse_genomes_project 17 81363370 81383121 - MGP_C3HHeJ_P0048316 Cebpz protein_coding protein_coding MGP_C3HHeJ_T0047891.1 MGP_C3HHeJ_G0023616.1 mouse_genomes_project 17 55204970 55221574 - MGP_C3HHeJ_P0047891 Sult1c2 protein_coding protein_coding MGP_C3HHeJ_T0045509.1 MGP_C3HHeJ_G0022993.1 mouse_genomes_project 17 22437274 22441439 - MGP_C3HHeJ_P0045509 Paqr4 protein_coding protein_coding MGP_C3HHeJ_T0003698.1 MGP_C3HHeJ_G0003326.1 mouse_genomes_project 17 45632029 45633778 + Runx2os1 antisense antisense MGP_C3HHeJ_T0045390.1 MGP_C3HHeJ_G0022933.1 mouse_genomes_project 17 18667828 18704981 + MGP_C3HHeJ_P0045390 protein_coding protein_coding MGP_C3HHeJ_T0099097.1 MGP_C3HHeJ_G0037291.1 mouse_genomes_project 17 74690481 74690611 - Gm24736 snRNA snRNA MGP_C3HHeJ_T0047905.1 MGP_C3HHeJ_G0023627.1 mouse_genomes_project 17 57421330 57430097 + MGP_C3HHeJ_P0047905 Ccdc94 protein_coding protein_coding MGP_C3HHeJ_T0048169.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950067 72957061 - MGP_C3HHeJ_P0048169 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048170.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950067 72955653 - MGP_C3HHeJ_P0048170 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048171.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950073 72956923 - MGP_C3HHeJ_P0048171 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048172.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950073 72959385 - MGP_C3HHeJ_P0048172 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048173.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950073 72957588 - MGP_C3HHeJ_P0048173 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048174.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950590 72955653 - MGP_C3HHeJ_P0048174 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048175.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950731 72952189 - MGP_C3HHeJ_P0048175 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048176.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72950843 72953033 - MGP_C3HHeJ_P0048176 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048177.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72952043 72955507 - MGP_C3HHeJ_P0048177 Tgif1 protein_coding protein_coding MGP_C3HHeJ_T0048178.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72952157 72956985 - Tgif1 protein_coding processed_transcript MGP_C3HHeJ_T0048179.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72952532 72955677 - Tgif1 protein_coding retained_intron MGP_C3HHeJ_T0048180.1 MGP_C3HHeJ_G0023723.1 mouse_genomes_project 17 72954236 72955670 - Tgif1 protein_coding processed_transcript MGP_C3HHeJ_T0046136.1 MGP_C3HHeJ_G0023150.1 mouse_genomes_project 17 26721729 26736315 - MGP_C3HHeJ_P0046136 Spdef protein_coding protein_coding MGP_C3HHeJ_T0046137.1 MGP_C3HHeJ_G0023150.1 mouse_genomes_project 17 26721824 26736316 - MGP_C3HHeJ_P0046137 Spdef protein_coding protein_coding MGP_C3HHeJ_T0046138.1 MGP_C3HHeJ_G0023150.1 mouse_genomes_project 17 26721826 26736254 - MGP_C3HHeJ_P0046138 Spdef protein_coding protein_coding MGP_C3HHeJ_T0046139.1 MGP_C3HHeJ_G0023150.1 mouse_genomes_project 17 26721882 26724966 - Spdef protein_coding processed_transcript MGP_C3HHeJ_T0046140.1 MGP_C3HHeJ_G0023150.1 mouse_genomes_project 17 26727373 26736289 - MGP_C3HHeJ_P0046140 Spdef protein_coding protein_coding MGP_C3HHeJ_T0045698.1 MGP_C3HHeJ_G0023045.1 mouse_genomes_project 17 23535105 23543442 + MGP_C3HHeJ_P0045698 Rpl3l protein_coding unknown_likely_coding MGP_C3HHeJ_T0045699.1 MGP_C3HHeJ_G0023045.1 mouse_genomes_project 17 23535276 23543529 + MGP_C3HHeJ_P0045699 Rpl3l protein_coding protein_coding MGP_C3HHeJ_T0045700.1 MGP_C3HHeJ_G0023045.1 mouse_genomes_project 17 23535630 23540755 + MGP_C3HHeJ_P0045700 Rpl3l protein_coding protein_coding MGP_C3HHeJ_T0045701.1 MGP_C3HHeJ_G0023045.1 mouse_genomes_project 17 23540074 23543529 + MGP_C3HHeJ_P0045701 Rpl3l protein_coding protein_coding MGP_C3HHeJ_T0046774.1 MGP_C3HHeJ_G0023298.1 mouse_genomes_project 17 33968776 33977458 + MGP_C3HHeJ_P0046774 Btnl1 protein_coding protein_coding MGP_C3HHeJ_T0047262.1 MGP_C3HHeJ_G0023398.1 mouse_genomes_project 17 36323917 36326128 - MGP_C3HHeJ_P0047262 Rpp21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047263.1 MGP_C3HHeJ_G0023398.1 mouse_genomes_project 17 36323939 36326115 - Rpp21 protein_coding retained_intron MGP_C3HHeJ_T0047264.1 MGP_C3HHeJ_G0023398.1 mouse_genomes_project 17 36323939 36326336 - MGP_C3HHeJ_P0047264 Rpp21 protein_coding protein_coding MGP_C3HHeJ_T0047265.1 MGP_C3HHeJ_G0023398.1 mouse_genomes_project 17 36323945 36324623 - Rpp21 protein_coding retained_intron MGP_C3HHeJ_T0047266.1 MGP_C3HHeJ_G0023398.1 mouse_genomes_project 17 36323984 36325882 - MGP_C3HHeJ_P0047266 Rpp21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047267.1 MGP_C3HHeJ_G0023398.1 mouse_genomes_project 17 36324216 36326127 - Rpp21 protein_coding retained_intron MGP_C3HHeJ_T0047591.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47219868 47224003 - MGP_C3HHeJ_P0047591 Polr1c protein_coding protein_coding MGP_C3HHeJ_T0047592.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47220049 47222522 - MGP_C3HHeJ_P0047592 Polr1c protein_coding protein_coding MGP_C3HHeJ_T0047593.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47220472 47223881 - Polr1c protein_coding retained_intron MGP_C3HHeJ_T0047594.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47220561 47223917 - MGP_C3HHeJ_P0047594 Polr1c protein_coding protein_coding MGP_C3HHeJ_T0047595.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47220783 47223917 - MGP_C3HHeJ_P0047595 Polr1c protein_coding protein_coding MGP_C3HHeJ_T0047596.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47220881 47223917 - MGP_C3HHeJ_P0047596 Polr1c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047597.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47221210 47223916 - Polr1c protein_coding retained_intron MGP_C3HHeJ_T0047598.1 MGP_C3HHeJ_G0023533.1 mouse_genomes_project 17 47223247 47223917 - Polr1c protein_coding retained_intron MGP_C3HHeJ_T0006814.1 MGP_C3HHeJ_G0005606.1 mouse_genomes_project 17 11096677 11105652 + Gm16050 lincRNA lincRNA MGP_C3HHeJ_T0047647.1 MGP_C3HHeJ_G0023546.1 mouse_genomes_project 17 47571902 47648008 - MGP_C3HHeJ_P0047647 Ptk7 protein_coding protein_coding MGP_C3HHeJ_T0045399.1 MGP_C3HHeJ_G0022942.1 mouse_genomes_project 17 19149714 19150635 + MGP_C3HHeJ_P0045399 Vmn1r229 protein_coding protein_coding MGP_C3HHeJ_T0048088.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67708890 67732443 + MGP_C3HHeJ_P0048088 Ppp4r1 protein_coding protein_coding MGP_C3HHeJ_T0048089.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67709097 67741921 + MGP_C3HHeJ_P0048089 Ppp4r1 protein_coding protein_coding MGP_C3HHeJ_T0048090.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67710474 67742147 + MGP_C3HHeJ_P0048090 Ppp4r1 protein_coding protein_coding MGP_C3HHeJ_T0048091.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67710474 67773068 + MGP_C3HHeJ_P0048091 Ppp4r1 protein_coding protein_coding MGP_C3HHeJ_T0048092.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67710474 67773063 + MGP_C3HHeJ_P0048092 Ppp4r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048093.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67710474 67773064 + MGP_C3HHeJ_P0048093 Ppp4r1 protein_coding protein_coding MGP_C3HHeJ_T0048094.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67728580 67739077 + Ppp4r1 protein_coding processed_transcript MGP_C3HHeJ_T0048095.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67731275 67739050 + Ppp4r1 protein_coding retained_intron MGP_C3HHeJ_T0048096.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67746372 67762176 + Ppp4r1 protein_coding processed_transcript MGP_C3HHeJ_T0048097.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67751308 67772998 + Ppp4r1 protein_coding processed_transcript MGP_C3HHeJ_T0048098.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67755709 67764287 + MGP_C3HHeJ_P0048098 Ppp4r1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048099.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67760124 67764223 + Ppp4r1 protein_coding retained_intron MGP_C3HHeJ_T0048100.1 MGP_C3HHeJ_G0023703.1 mouse_genomes_project 17 67769031 67770123 + MGP_C3HHeJ_P0048100 Ppp4r1 protein_coding protein_coding MGP_C3HHeJ_T0047500.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46495210 46500720 - MGP_C3HHeJ_P0047500 Hsp90ab1 protein_coding protein_coding MGP_C3HHeJ_T0047501.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46496293 46497175 - Hsp90ab1 protein_coding retained_intron MGP_C3HHeJ_T0047502.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46496453 46500702 - MGP_C3HHeJ_P0047502 Hsp90ab1 protein_coding protein_coding MGP_C3HHeJ_T0047503.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46497016 46500704 - MGP_C3HHeJ_P0047503 Hsp90ab1 protein_coding protein_coding MGP_C3HHeJ_T0047504.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46497883 46499018 - Hsp90ab1 protein_coding retained_intron MGP_C3HHeJ_T0047505.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46498099 46500704 - MGP_C3HHeJ_P0047505 Hsp90ab1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047506.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46498454 46500720 - Hsp90ab1 protein_coding retained_intron MGP_C3HHeJ_T0047507.1 MGP_C3HHeJ_G0023519.1 mouse_genomes_project 17 46498973 46499994 - MGP_C3HHeJ_P0047507 Hsp90ab1 protein_coding protein_coding MGP_C3HHeJ_T0048143.1 MGP_C3HHeJ_G0023717.1 mouse_genomes_project 17 70319856 70506002 + L3mbtl4 protein_coding retained_intron MGP_C3HHeJ_T0048144.1 MGP_C3HHeJ_G0023717.1 mouse_genomes_project 17 70319856 70679460 + MGP_C3HHeJ_P0048144 L3mbtl4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048145.1 MGP_C3HHeJ_G0023717.1 mouse_genomes_project 17 70319856 70690094 + MGP_C3HHeJ_P0048145 L3mbtl4 protein_coding protein_coding MGP_C3HHeJ_T0048146.1 MGP_C3HHeJ_G0023717.1 mouse_genomes_project 17 70319856 70828635 + MGP_C3HHeJ_P0048146 L3mbtl4 protein_coding protein_coding MGP_C3HHeJ_T0010089.1 MGP_C3HHeJ_G0008222.1 mouse_genomes_project 17 22542286 22542365 + Mir5125 miRNA miRNA MGP_C3HHeJ_T0010139.1 MGP_C3HHeJ_G0008272.1 mouse_genomes_project 17 72966348 72966446 - Mir1195 miRNA miRNA MGP_C3HHeJ_T0048377.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86282131 86390704 + MGP_C3HHeJ_P0048377 Mta3 protein_coding protein_coding MGP_C3HHeJ_T0048378.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86282131 86378137 + MGP_C3HHeJ_P0048378 Mta3 protein_coding protein_coding MGP_C3HHeJ_T0048379.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86282131 86378139 + MGP_C3HHeJ_P0048379 Mta3 protein_coding protein_coding MGP_C3HHeJ_T0048380.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86282152 86406820 + MGP_C3HHeJ_P0048380 Mta3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048381.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86282159 86400211 + MGP_C3HHeJ_P0048381 Mta3 protein_coding protein_coding MGP_C3HHeJ_T0048382.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86282226 86408792 + MGP_C3HHeJ_P0048382 Mta3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048383.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86308279 86332973 + Mta3 protein_coding processed_transcript MGP_C3HHeJ_T0048384.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86334738 86385525 + MGP_C3HHeJ_P0048384 Mta3 protein_coding protein_coding MGP_C3HHeJ_T0048385.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86368630 86405520 + MGP_C3HHeJ_P0048385 Mta3 protein_coding protein_coding MGP_C3HHeJ_T0048386.1 MGP_C3HHeJ_G0023800.1 mouse_genomes_project 17 86380686 86389878 + Mta3 protein_coding processed_transcript MGP_C3HHeJ_T0047859.1 MGP_C3HHeJ_G0023607.1 mouse_genomes_project 17 51786720 51966338 + MGP_C3HHeJ_P0047859 Plcl2 protein_coding protein_coding MGP_C3HHeJ_T0048236.1 MGP_C3HHeJ_G0023739.1 mouse_genomes_project 17 75026265 75040765 + MGP_C3HHeJ_P0048236 Ypel5 protein_coding protein_coding MGP_C3HHeJ_T0046149.1 MGP_C3HHeJ_G0023154.1 mouse_genomes_project 17 26925224 26933940 - MGP_C3HHeJ_P0046149 Taf11 protein_coding protein_coding MGP_C3HHeJ_T0046150.1 MGP_C3HHeJ_G0023154.1 mouse_genomes_project 17 26925226 26932368 - MGP_C3HHeJ_P0046150 Taf11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046151.1 MGP_C3HHeJ_G0023154.1 mouse_genomes_project 17 26925230 26932421 - MGP_C3HHeJ_P0046151 Taf11 protein_coding protein_coding MGP_C3HHeJ_T0046152.1 MGP_C3HHeJ_G0023154.1 mouse_genomes_project 17 26925764 26927377 - Taf11 protein_coding processed_transcript MGP_C3HHeJ_T0047632.1 MGP_C3HHeJ_G0023541.1 mouse_genomes_project 17 47434126 47440329 - MGP_C3HHeJ_P0047632 Slc22a7 protein_coding protein_coding MGP_C3HHeJ_T0046373.1 MGP_C3HHeJ_G0023200.1 mouse_genomes_project 17 29860376 29883264 - MGP_C3HHeJ_P0046373 Glo1 protein_coding protein_coding MGP_C3HHeJ_T0046374.1 MGP_C3HHeJ_G0023200.1 mouse_genomes_project 17 29860376 29883264 - MGP_C3HHeJ_P0046374 Glo1 protein_coding protein_coding MGP_C3HHeJ_T0003683.1 MGP_C3HHeJ_G0003314.1 mouse_genomes_project 17 34814968 34819858 - Gm10501 antisense antisense MGP_C3HHeJ_T0010092.1 MGP_C3HHeJ_G0008225.1 mouse_genomes_project 17 23002701 23002764 - Mir6965 miRNA miRNA MGP_C3HHeJ_T0047625.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47430863 47433718 + MGP_C3HHeJ_P0047625 Crip3 protein_coding protein_coding MGP_C3HHeJ_T0047626.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47430879 47433519 + Crip3 protein_coding retained_intron MGP_C3HHeJ_T0047627.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47430879 47433713 + MGP_C3HHeJ_P0047627 Crip3 protein_coding protein_coding MGP_C3HHeJ_T0047628.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47430888 47433357 + MGP_C3HHeJ_P0047628 Crip3 protein_coding protein_coding MGP_C3HHeJ_T0047629.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47430907 47432427 + Crip3 protein_coding processed_transcript MGP_C3HHeJ_T0047630.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47432616 47433664 + Crip3 protein_coding retained_intron MGP_C3HHeJ_T0047631.1 MGP_C3HHeJ_G0023540.1 mouse_genomes_project 17 47432906 47433639 + Crip3 protein_coding retained_intron MGP_C3HHeJ_T0045236.1 MGP_C3HHeJ_G0022876.1 mouse_genomes_project 17 9944435 9986466 + MGP_C3HHeJ_P0045236 Plg protein_coding protein_coding MGP_C3HHeJ_T0047803.1 MGP_C3HHeJ_G0023593.1 mouse_genomes_project 17 49473275 49489104 + MGP_C3HHeJ_P0047803 protein_coding protein_coding MGP_C3HHeJ_T0047804.1 MGP_C3HHeJ_G0023593.1 mouse_genomes_project 17 49473299 49487605 + MGP_C3HHeJ_P0047804 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047805.1 MGP_C3HHeJ_G0023593.1 mouse_genomes_project 17 49473543 49486279 + MGP_C3HHeJ_P0047805 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0011338.1 MGP_C3HHeJ_G0009471.1 mouse_genomes_project 17 71655800 71656039 - Gm22967 misc_RNA misc_RNA MGP_C3HHeJ_T0046801.1 MGP_C3HHeJ_G0023303.1 mouse_genomes_project 17 34297238 34299187 + MGP_C3HHeJ_P0046801 Gpsm3 protein_coding protein_coding MGP_C3HHeJ_T0046802.1 MGP_C3HHeJ_G0023303.1 mouse_genomes_project 17 34297524 34299187 + MGP_C3HHeJ_P0046802 Gpsm3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046803.1 MGP_C3HHeJ_G0023303.1 mouse_genomes_project 17 34297663 34299073 + MGP_C3HHeJ_P0046803 Gpsm3 protein_coding protein_coding MGP_C3HHeJ_T0045155.1 MGP_C3HHeJ_G0022850.1 mouse_genomes_project 17 4349248 4371202 + MGP_C3HHeJ_P0045155 protein_coding protein_coding MGP_C3HHeJ_T0046266.1 MGP_C3HHeJ_G0023176.1 mouse_genomes_project 17 28014806 28034138 - MGP_C3HHeJ_P0046266 4930539E08Rik protein_coding unknown_likely_coding MGP_C3HHeJ_T0046267.1 MGP_C3HHeJ_G0023176.1 mouse_genomes_project 17 28014819 28034229 - MGP_C3HHeJ_P0046267 4930539E08Rik protein_coding protein_coding MGP_C3HHeJ_T0003654.1 MGP_C3HHeJ_G0003294.1 mouse_genomes_project 17 23319299 23319799 + Rab26os antisense antisense MGP_C3HHeJ_T0003655.1 MGP_C3HHeJ_G0003294.1 mouse_genomes_project 17 23319318 23319798 + Rab26os antisense antisense MGP_C3HHeJ_T0046665.1 MGP_C3HHeJ_G0023273.1 mouse_genomes_project 17 33483284 33484835 - MGP_C3HHeJ_P0046665 B3galt4 protein_coding protein_coding MGP_C3HHeJ_T0046711.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33600316 33627742 + MGP_C3HHeJ_P0046711 Col11a2 protein_coding protein_coding MGP_C3HHeJ_T0046712.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33600316 33627299 + MGP_C3HHeJ_P0046712 Col11a2 protein_coding protein_coding MGP_C3HHeJ_T0046713.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33600316 33627299 + MGP_C3HHeJ_P0046713 Col11a2 protein_coding protein_coding MGP_C3HHeJ_T0046714.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33600316 33613496 + MGP_C3HHeJ_P0046714 Col11a2 protein_coding protein_coding MGP_C3HHeJ_T0046715.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33609171 33621008 + MGP_C3HHeJ_P0046715 Col11a2 protein_coding protein_coding MGP_C3HHeJ_T0046716.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33613285 33615312 + Col11a2 protein_coding processed_transcript MGP_C3HHeJ_T0046717.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33616063 33617439 + Col11a2 protein_coding retained_intron MGP_C3HHeJ_T0046718.1 MGP_C3HHeJ_G0023282.1 mouse_genomes_project 17 33623474 33625849 + Col11a2 protein_coding retained_intron MGP_C3HHeJ_T0013148.1 MGP_C3HHeJ_G0011252.1 mouse_genomes_project 17 78623384 78623831 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0046264.1 MGP_C3HHeJ_G0023175.1 mouse_genomes_project 17 27972916 28007314 + MGP_C3HHeJ_P0046264 Pnpla1 protein_coding protein_coding MGP_C3HHeJ_T0046265.1 MGP_C3HHeJ_G0023175.1 mouse_genomes_project 17 27972916 28007314 + MGP_C3HHeJ_P0046265 Pnpla1 protein_coding protein_coding MGP_C3HHeJ_T0047946.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57802748 57836776 + MGP_C3HHeJ_P0047946 Uhrf1 protein_coding protein_coding MGP_C3HHeJ_T0047947.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57802827 57836776 + MGP_C3HHeJ_P0047947 Uhrf1 protein_coding protein_coding MGP_C3HHeJ_T0047948.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57803740 57836776 + MGP_C3HHeJ_P0047948 Uhrf1 protein_coding protein_coding MGP_C3HHeJ_T0047949.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57803775 57836776 + MGP_C3HHeJ_P0047949 Uhrf1 protein_coding protein_coding MGP_C3HHeJ_T0047950.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57803834 57810147 + MGP_C3HHeJ_P0047950 Uhrf1 protein_coding protein_coding MGP_C3HHeJ_T0047951.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57812079 57812593 + Uhrf1 protein_coding retained_intron MGP_C3HHeJ_T0047952.1 MGP_C3HHeJ_G0023647.1 mouse_genomes_project 17 57830598 57835273 + Uhrf1 protein_coding retained_intron MGP_C3HHeJ_T0048252.1 MGP_C3HHeJ_G0023748.1 mouse_genomes_project 17 76477794 76481346 + MGP_C3HHeJ_P0048252 protein_coding protein_coding MGP_C3HHeJ_T0047810.1 MGP_C3HHeJ_G0023595.1 mouse_genomes_project 17 49525749 49533036 + MGP_C3HHeJ_P0047810 Treml1 protein_coding protein_coding MGP_C3HHeJ_T0047380.1 MGP_C3HHeJ_G0023447.1 mouse_genomes_project 17 37843453 37844698 - MGP_C3HHeJ_P0047380 Olfr116 protein_coding protein_coding MGP_C3HHeJ_T0100333.1 MGP_C3HHeJ_G0038527.1 mouse_genomes_project 17 22768297 22768426 - Gm25092 snoRNA snoRNA MGP_C3HHeJ_T0006857.1 MGP_C3HHeJ_G0005642.1 mouse_genomes_project 17 35016910 35018979 + Gm17705 lincRNA lincRNA MGP_C3HHeJ_T0101805.1 MGP_C3HHeJ_G0039770.1 mouse_genomes_project 17 21904818 21937369 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0047910.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57469564 57476979 + MGP_C3HHeJ_P0047910 Mpnd protein_coding protein_coding MGP_C3HHeJ_T0047911.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57474255 57481821 + MGP_C3HHeJ_P0047911 Mpnd protein_coding protein_coding MGP_C3HHeJ_T0047912.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57474262 57481677 + MGP_C3HHeJ_P0047912 Mpnd protein_coding protein_coding MGP_C3HHeJ_T0047913.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57474285 57481684 + MGP_C3HHeJ_P0047913 Mpnd protein_coding protein_coding MGP_C3HHeJ_T0047914.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57474309 57477377 + Mpnd protein_coding retained_intron MGP_C3HHeJ_T0047915.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57474387 57481645 + MGP_C3HHeJ_P0047915 Mpnd protein_coding protein_coding MGP_C3HHeJ_T0047916.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57474987 57476722 + Mpnd protein_coding retained_intron MGP_C3HHeJ_T0047917.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57475494 57480528 + MGP_C3HHeJ_P0047917 Mpnd protein_coding protein_coding MGP_C3HHeJ_T0047918.1 MGP_C3HHeJ_G0023631.1 mouse_genomes_project 17 57476997 57480152 + Mpnd protein_coding retained_intron MGP_C3HHeJ_T0047169.1 MGP_C3HHeJ_G0023381.1 mouse_genomes_project 17 35812680 35831660 + MGP_C3HHeJ_P0047169 Mdc1 protein_coding protein_coding MGP_C3HHeJ_T0047170.1 MGP_C3HHeJ_G0023381.1 mouse_genomes_project 17 35812809 35831666 + MGP_C3HHeJ_P0047170 Mdc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0047171.1 MGP_C3HHeJ_G0023381.1 mouse_genomes_project 17 35812841 35817165 + MGP_C3HHeJ_P0047171 Mdc1 protein_coding protein_coding MGP_C3HHeJ_T0048487.1 MGP_C3HHeJ_G0023839.1 mouse_genomes_project 17 91653619 91705824 - MGP_C3HHeJ_P0048487 Lhcgr protein_coding protein_coding MGP_C3HHeJ_T0048257.1 MGP_C3HHeJ_G0023752.1 mouse_genomes_project 17 76702096 76735155 - MGP_C3HHeJ_P0048257 Nlrc4 protein_coding protein_coding MGP_C3HHeJ_T0045396.1 MGP_C3HHeJ_G0022939.1 mouse_genomes_project 17 18970534 18971566 - MGP_C3HHeJ_P0045396 Fpr-rs3 protein_coding protein_coding MGP_C3HHeJ_T0048414.1 MGP_C3HHeJ_G0023815.1 mouse_genomes_project 17 88705821 88875134 - MGP_C3HHeJ_P0048414 Srbd1 protein_coding protein_coding MGP_C3HHeJ_T0045458.1 MGP_C3HHeJ_G0022975.1 mouse_genomes_project 17 21360519 21372380 + MGP_C3HHeJ_P0045458 Gm5493 protein_coding protein_coding MGP_C3HHeJ_T0046070.1 MGP_C3HHeJ_G0023134.1 mouse_genomes_project 17 25876955 25878451 - MGP_C3HHeJ_P0046070 Cuta protein_coding protein_coding MGP_C3HHeJ_T0046071.1 MGP_C3HHeJ_G0023134.1 mouse_genomes_project 17 25876955 25878461 - MGP_C3HHeJ_P0046071 Cuta protein_coding protein_coding MGP_C3HHeJ_T0013110.1 MGP_C3HHeJ_G0011214.1 mouse_genomes_project 17 38119034 38119971 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017338.1 MGP_C3HHeJ_G0015106.1 mouse_genomes_project 17 28722977 28855962 + Gm28052 processed_transcript processed_transcript MGP_C3HHeJ_T0047425.1 MGP_C3HHeJ_G0023485.1 mouse_genomes_project 17 41452319 41456980 + MGP_C3HHeJ_P0047425 Esp1 protein_coding protein_coding MGP_C3HHeJ_T0045114.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3133709 3230256 + MGP_C3HHeJ_P0045114 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045115.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3133709 3236019 + MGP_C3HHeJ_P0045115 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045116.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3133765 3236855 + MGP_C3HHeJ_P0045116 Synj2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045117.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3133790 3236019 + MGP_C3HHeJ_P0045117 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045118.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3170141 3223747 + MGP_C3HHeJ_P0045118 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045119.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3170196 3241754 + MGP_C3HHeJ_P0045119 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045120.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3170295 3236019 + MGP_C3HHeJ_P0045120 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045121.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3182519 3236806 + MGP_C3HHeJ_P0045121 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045122.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3184596 3241754 + MGP_C3HHeJ_P0045122 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045123.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3191124 3235792 + MGP_C3HHeJ_P0045123 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045124.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3191954 3217001 + MGP_C3HHeJ_P0045124 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045125.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3204583 3230392 + MGP_C3HHeJ_P0045125 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045126.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3204600 3235870 + MGP_C3HHeJ_P0045126 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045127.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3204615 3207494 + Synj2 protein_coding processed_transcript MGP_C3HHeJ_T0045128.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3210070 3235837 + MGP_C3HHeJ_P0045128 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0045129.1 MGP_C3HHeJ_G0022841.1 mouse_genomes_project 17 3222532 3234926 + MGP_C3HHeJ_P0045129 Synj2 protein_coding protein_coding MGP_C3HHeJ_T0013090.1 MGP_C3HHeJ_G0011194.1 mouse_genomes_project 17 33984019 33984307 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101801.1 MGP_C3HHeJ_G0039766.1 mouse_genomes_project 17 19641618 19642131 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045301.1 MGP_C3HHeJ_G0022896.1 mouse_genomes_project 17 12676889 12679642 + MGP_C3HHeJ_P0045301 1600012H06Rik protein_coding protein_coding MGP_C3HHeJ_T0045302.1 MGP_C3HHeJ_G0022896.1 mouse_genomes_project 17 12676935 12679640 + MGP_C3HHeJ_P0045302 1600012H06Rik protein_coding protein_coding MGP_C3HHeJ_T0045303.1 MGP_C3HHeJ_G0022896.1 mouse_genomes_project 17 12676974 12678692 + MGP_C3HHeJ_P0045303 1600012H06Rik protein_coding protein_coding MGP_C3HHeJ_T0045304.1 MGP_C3HHeJ_G0022896.1 mouse_genomes_project 17 12676976 12694325 + 1600012H06Rik protein_coding processed_transcript MGP_C3HHeJ_T0013114.1 MGP_C3HHeJ_G0011218.1 mouse_genomes_project 17 38209331 38209825 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101836.1 MGP_C3HHeJ_G0039801.1 mouse_genomes_project 17 36630969 36632720 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048137.1 MGP_C3HHeJ_G0023714.1 mouse_genomes_project 17 69646698 69648457 - MGP_C3HHeJ_P0048137 Lrrc30 protein_coding protein_coding MGP_C3HHeJ_T0045503.1 MGP_C3HHeJ_G0022991.1 mouse_genomes_project 17 22403182 22423085 - protein_coding retained_intron MGP_C3HHeJ_T0045504.1 MGP_C3HHeJ_G0022991.1 mouse_genomes_project 17 22403182 22421019 - MGP_C3HHeJ_P0045504 protein_coding protein_coding MGP_C3HHeJ_T0045505.1 MGP_C3HHeJ_G0022991.1 mouse_genomes_project 17 22403182 22423085 - MGP_C3HHeJ_P0045505 protein_coding protein_coding MGP_C3HHeJ_T0045506.1 MGP_C3HHeJ_G0022991.1 mouse_genomes_project 17 22403772 22422242 - protein_coding retained_intron MGP_C3HHeJ_T0045507.1 MGP_C3HHeJ_G0022991.1 mouse_genomes_project 17 22403772 22405054 - protein_coding retained_intron MGP_C3HHeJ_T0047894.1 MGP_C3HHeJ_G0023619.1 mouse_genomes_project 17 56924892 56963380 + MGP_C3HHeJ_P0047894 St6gal2 protein_coding protein_coding MGP_C3HHeJ_T0047895.1 MGP_C3HHeJ_G0023619.1 mouse_genomes_project 17 56924899 56978589 + MGP_C3HHeJ_P0047895 St6gal2 protein_coding protein_coding MGP_C3HHeJ_T0047896.1 MGP_C3HHeJ_G0023619.1 mouse_genomes_project 17 56925060 56993865 + MGP_C3HHeJ_P0047896 St6gal2 protein_coding protein_coding MGP_C3HHeJ_T0047897.1 MGP_C3HHeJ_G0023619.1 mouse_genomes_project 17 56925756 56962716 + St6gal2 protein_coding processed_transcript MGP_C3HHeJ_T0010086.1 MGP_C3HHeJ_G0008219.1 mouse_genomes_project 17 15774041 15774158 - Gm25927 miRNA miRNA MGP_C3HHeJ_T0048299.1 MGP_C3HHeJ_G0023762.1 mouse_genomes_project 17 81086038 81169888 - MGP_C3HHeJ_P0048299 Strn protein_coding protein_coding MGP_C3HHeJ_T0048300.1 MGP_C3HHeJ_G0023762.1 mouse_genomes_project 17 81098549 81116264 - MGP_C3HHeJ_P0048300 Strn protein_coding protein_coding MGP_C3HHeJ_T0013062.1 MGP_C3HHeJ_G0011166.1 mouse_genomes_project 17 3024151 3024449 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047508.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515301 46523402 - MGP_C3HHeJ_P0047508 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047509.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515302 46531519 - MGP_C3HHeJ_P0047509 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047510.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515304 46524468 - MGP_C3HHeJ_P0047510 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047511.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515305 46526732 - MGP_C3HHeJ_P0047511 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047512.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515305 46526400 - MGP_C3HHeJ_P0047512 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047513.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515305 46526398 - MGP_C3HHeJ_P0047513 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047514.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515644 46523324 - MGP_C3HHeJ_P0047514 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047515.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46515773 46523090 - MGP_C3HHeJ_P0047515 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047516.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46516320 46519569 - Slc29a1 protein_coding processed_transcript MGP_C3HHeJ_T0047517.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46519193 46526330 - MGP_C3HHeJ_P0047517 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047518.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46519194 46526430 - MGP_C3HHeJ_P0047518 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047519.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46519347 46523667 - Slc29a1 protein_coding retained_intron MGP_C3HHeJ_T0047520.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46519695 46520939 - Slc29a1 protein_coding retained_intron MGP_C3HHeJ_T0047521.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520034 46526379 - Slc29a1 protein_coding retained_intron MGP_C3HHeJ_T0047522.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520244 46526343 - Slc29a1 protein_coding retained_intron MGP_C3HHeJ_T0047523.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520244 46531520 - MGP_C3HHeJ_P0047523 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047524.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520344 46526681 - MGP_C3HHeJ_P0047524 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047525.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520350 46524462 - MGP_C3HHeJ_P0047525 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047526.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520524 46531522 - MGP_C3HHeJ_P0047526 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047527.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520549 46526384 - MGP_C3HHeJ_P0047527 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047528.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520599 46526330 - MGP_C3HHeJ_P0047528 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047529.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520784 46526369 - MGP_C3HHeJ_P0047529 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047530.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520850 46526371 - MGP_C3HHeJ_P0047530 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047531.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520896 46526786 - MGP_C3HHeJ_P0047531 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0047532.1 MGP_C3HHeJ_G0023520.1 mouse_genomes_project 17 46520939 46527892 - MGP_C3HHeJ_P0047532 Slc29a1 protein_coding protein_coding MGP_C3HHeJ_T0045662.1 MGP_C3HHeJ_G0023034.1 mouse_genomes_project 17 23430565 23436707 + MGP_C3HHeJ_P0045662 Nthl1 protein_coding protein_coding MGP_C3HHeJ_T0045928.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24706840 24723430 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045929.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24706840 24723522 - MGP_C3HHeJ_P0045929 Wdr90 protein_coding protein_coding MGP_C3HHeJ_T0045930.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24706842 24723515 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045931.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24707137 24723548 - MGP_C3HHeJ_P0045931 Wdr90 protein_coding protein_coding MGP_C3HHeJ_T0045932.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24707457 24708564 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045933.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24710638 24713830 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045934.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24712022 24713937 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045935.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24713980 24715960 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045936.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24715404 24723522 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045937.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24715894 24717364 - Wdr90 protein_coding retained_intron MGP_C3HHeJ_T0045938.1 MGP_C3HHeJ_G0023101.1 mouse_genomes_project 17 24717848 24721273 - MGP_C3HHeJ_P0045938 Wdr90 protein_coding protein_coding MGP_C3HHeJ_T0045511.1 MGP_C3HHeJ_G0022995.1 mouse_genomes_project 17 22453930 22468715 - MGP_C3HHeJ_P0045511 Flywch1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0045512.1 MGP_C3HHeJ_G0022995.1 mouse_genomes_project 17 22457730 22474905 - MGP_C3HHeJ_P0045512 Flywch1 protein_coding protein_coding MGP_C3HHeJ_T0045513.1 MGP_C3HHeJ_G0022995.1 mouse_genomes_project 17 22457739 22466032 - MGP_C3HHeJ_P0045513 Flywch1 protein_coding protein_coding MGP_C3HHeJ_T0013141.1 MGP_C3HHeJ_G0011245.1 mouse_genomes_project 17 68369033 68369393 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048009.1 MGP_C3HHeJ_G0023664.1 mouse_genomes_project 17 58400115 58431504 - MGP_C3HHeJ_P0048009 Acsbg2 protein_coding protein_coding MGP_C3HHeJ_T0045435.1 MGP_C3HHeJ_G0022964.1 mouse_genomes_project 17 20228158 20264505 - MGP_C3HHeJ_P0045435 protein_coding protein_coding MGP_C3HHeJ_T0047064.1 MGP_C3HHeJ_G0023358.1 mouse_genomes_project 17 35077253 35080579 + MGP_C3HHeJ_P0047064 Gm16181 protein_coding protein_coding MGP_C3HHeJ_T0098071.1 MGP_C3HHeJ_G0036283.1 mouse_genomes_project 17 45534757 45534876 - n-R5s27 rRNA rRNA MGP_C3HHeJ_T0045275.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11320498 11369399 - MGP_C3HHeJ_P0045275 Tcte2 protein_coding protein_coding MGP_C3HHeJ_T0045276.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11320504 11369423 - MGP_C3HHeJ_P0045276 Tcte2 protein_coding protein_coding MGP_C3HHeJ_T0045277.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11322085 11369388 - MGP_C3HHeJ_P0045277 Tcte2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045278.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11322103 11340921 - MGP_C3HHeJ_P0045278 Tcte2 protein_coding protein_coding MGP_C3HHeJ_T0045279.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11324490 11369846 - MGP_C3HHeJ_P0045279 Tcte2 protein_coding protein_coding MGP_C3HHeJ_T0045280.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11324490 11369622 - MGP_C3HHeJ_P0045280 Tcte2 protein_coding protein_coding MGP_C3HHeJ_T0045281.1 MGP_C3HHeJ_G0022890.1 mouse_genomes_project 17 11324490 11369407 - MGP_C3HHeJ_P0045281 Tcte2 protein_coding protein_coding MGP_C3HHeJ_T0048062.1 MGP_C3HHeJ_G0023691.1 mouse_genomes_project 17 60605192 60619893 - MGP_C3HHeJ_P0048062 Nudt12 protein_coding protein_coding MGP_C3HHeJ_T0048063.1 MGP_C3HHeJ_G0023691.1 mouse_genomes_project 17 60605671 60610228 - Nudt12 protein_coding retained_intron MGP_C3HHeJ_T0048064.1 MGP_C3HHeJ_G0023691.1 mouse_genomes_project 17 60612915 60619789 - MGP_C3HHeJ_P0048064 Nudt12 protein_coding protein_coding MGP_C3HHeJ_T0013138.1 MGP_C3HHeJ_G0011242.1 mouse_genomes_project 17 57479314 57479576 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048208.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73480858 73492939 - Smchd1 protein_coding processed_transcript MGP_C3HHeJ_T0048209.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73480858 73612882 - MGP_C3HHeJ_P0048209 Smchd1 protein_coding protein_coding MGP_C3HHeJ_T0048210.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73482879 73485374 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0048211.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73485287 73498290 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0048212.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73487274 73489777 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0048213.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73493522 73497543 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0048214.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73526836 73528083 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0048215.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73530682 73531497 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0048219.1 MGP_C3HHeJ_G0023730.1 mouse_genomes_project 17 73610067 73612867 - Smchd1 protein_coding retained_intron MGP_C3HHeJ_T0013105.1 MGP_C3HHeJ_G0011209.1 mouse_genomes_project 17 36570208 36571201 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010138.1 MGP_C3HHeJ_G0008271.1 mouse_genomes_project 17 69006715 69006804 - Mir5709 miRNA miRNA MGP_C3HHeJ_T0048424.1 MGP_C3HHeJ_G0023820.1 mouse_genomes_project 17 89716524 89720247 - MGP_C3HHeJ_P0048424 Atp6v1e2 protein_coding protein_coding MGP_C3HHeJ_T0048313.1 MGP_C3HHeJ_G0023768.1 mouse_genomes_project 17 81360846 81364671 + MGP_C3HHeJ_P0048313 Cebpzos protein_coding protein_coding MGP_C3HHeJ_T0048314.1 MGP_C3HHeJ_G0023768.1 mouse_genomes_project 17 81360863 81364671 + MGP_C3HHeJ_P0048314 Cebpzos protein_coding protein_coding MGP_C3HHeJ_T0048315.1 MGP_C3HHeJ_G0023768.1 mouse_genomes_project 17 81361046 81362803 + MGP_C3HHeJ_P0048315 Cebpzos protein_coding protein_coding MGP_C3HHeJ_T0046644.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33463081 33464035 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046645.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33463120 33471190 + MGP_C3HHeJ_P0046645 Rgl2 protein_coding protein_coding MGP_C3HHeJ_T0046646.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33463442 33465756 + Rgl2 protein_coding processed_transcript MGP_C3HHeJ_T0046647.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33463512 33465922 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046648.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33464428 33465579 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046649.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33464437 33466062 + Rgl2 protein_coding processed_transcript MGP_C3HHeJ_T0046650.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33464453 33465496 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046651.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33464755 33466052 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046652.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33465601 33466773 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046653.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33465680 33466696 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0046654.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33467480 33470727 + MGP_C3HHeJ_P0046654 Rgl2 protein_coding protein_coding MGP_C3HHeJ_T0046655.1 MGP_C3HHeJ_G0023270.1 mouse_genomes_project 17 33468877 33470393 + Rgl2 protein_coding retained_intron MGP_C3HHeJ_T0047839.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50646454 50655917 + MGP_C3HHeJ_P0047839 Mocs1 protein_coding protein_coding MGP_C3HHeJ_T0047840.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50646534 50665164 + MGP_C3HHeJ_P0047840 Mocs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047841.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50646534 50665164 + MGP_C3HHeJ_P0047841 Mocs1 protein_coding protein_coding MGP_C3HHeJ_T0047842.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50646534 50665164 + MGP_C3HHeJ_P0047842 Mocs1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0047843.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50651290 50653615 + Mocs1 protein_coding processed_transcript MGP_C3HHeJ_T0047844.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50660320 50664642 + MGP_C3HHeJ_P0047844 Mocs1 protein_coding protein_coding MGP_C3HHeJ_T0047845.1 MGP_C3HHeJ_G0023602.1 mouse_genomes_project 17 50662772 50666856 + MGP_C3HHeJ_P0047845 Mocs1 protein_coding protein_coding MGP_C3HHeJ_T0045599.1 MGP_C3HHeJ_G0023020.1 mouse_genomes_project 17 23021473 23119758 - MGP_C3HHeJ_P0045599 Abca17 protein_coding protein_coding MGP_C3HHeJ_T0045600.1 MGP_C3HHeJ_G0023020.1 mouse_genomes_project 17 23021493 23115982 - MGP_C3HHeJ_P0045600 Abca17 protein_coding protein_coding MGP_C3HHeJ_T0045992.1 MGP_C3HHeJ_G0023115.1 mouse_genomes_project 17 25012503 25015583 + MGP_C3HHeJ_P0045992 Mrpl28 protein_coding protein_coding MGP_C3HHeJ_T0045993.1 MGP_C3HHeJ_G0023115.1 mouse_genomes_project 17 25012697 25013910 + Mrpl28 protein_coding retained_intron MGP_C3HHeJ_T0048073.1 MGP_C3HHeJ_G0023695.1 mouse_genomes_project 17 65716620 65997123 + MGP_C3HHeJ_P0048073 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048074.1 MGP_C3HHeJ_G0023695.1 mouse_genomes_project 17 65793220 65997600 + MGP_C3HHeJ_P0048074 protein_coding protein_coding MGP_C3HHeJ_T0046936.1 MGP_C3HHeJ_G0023328.1 mouse_genomes_project 17 34792062 34795609 - MGP_C3HHeJ_P0046936 Hspa1a protein_coding protein_coding MGP_C3HHeJ_T0101831.1 MGP_C3HHeJ_G0039796.1 mouse_genomes_project 17 36276904 36281135 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046666.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486397 33491257 - Rps18 protein_coding retained_intron MGP_C3HHeJ_T0046667.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486397 33493837 - Rps18 protein_coding processed_transcript MGP_C3HHeJ_T0046668.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486397 33494288 - MGP_C3HHeJ_P0046668 Rps18 protein_coding protein_coding MGP_C3HHeJ_T0046669.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486397 33494342 - MGP_C3HHeJ_P0046669 Rps18 protein_coding protein_coding MGP_C3HHeJ_T0046670.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486398 33494285 - Rps18 protein_coding retained_intron MGP_C3HHeJ_T0046671.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486398 33493106 - Rps18 protein_coding processed_transcript MGP_C3HHeJ_T0046672.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486402 33491111 - Rps18 protein_coding retained_intron MGP_C3HHeJ_T0046673.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33486667 33494278 - Rps18 protein_coding retained_intron MGP_C3HHeJ_T0046674.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33493449 33494285 - Rps18 protein_coding retained_intron MGP_C3HHeJ_T0046675.1 MGP_C3HHeJ_G0023274.1 mouse_genomes_project 17 33494143 33494637 - Rps18 protein_coding processed_transcript MGP_C3HHeJ_T0101845.1 MGP_C3HHeJ_G0039810.1 mouse_genomes_project 17 37313150 37313997 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045853.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432168 24519287 + MGP_C3HHeJ_P0045853 Lmf1 protein_coding protein_coding MGP_C3HHeJ_T0045854.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432171 24519287 + MGP_C3HHeJ_P0045854 Lmf1 protein_coding protein_coding MGP_C3HHeJ_T0045855.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432181 24452396 + Lmf1 protein_coding retained_intron MGP_C3HHeJ_T0045856.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432181 24519184 + MGP_C3HHeJ_P0045856 Lmf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045857.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432191 24510701 + MGP_C3HHeJ_P0045857 Lmf1 protein_coding protein_coding MGP_C3HHeJ_T0045858.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432193 24443074 + Lmf1 protein_coding retained_intron MGP_C3HHeJ_T0045859.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432193 24489679 + Lmf1 protein_coding retained_intron MGP_C3HHeJ_T0045860.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432193 24503388 + Lmf1 protein_coding retained_intron MGP_C3HHeJ_T0045861.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24432314 24485519 + Lmf1 protein_coding processed_transcript MGP_C3HHeJ_T0045862.1 MGP_C3HHeJ_G0023083.1 mouse_genomes_project 17 24511261 24512295 + MGP_C3HHeJ_P0045862 Lmf1 protein_coding protein_coding MGP_C3HHeJ_T0047493.1 MGP_C3HHeJ_G0023512.1 mouse_genomes_project 17 46307413 46349372 - MGP_C3HHeJ_P0047493 Cdc5l protein_coding protein_coding MGP_C3HHeJ_T0048468.1 MGP_C3HHeJ_G0023835.1 mouse_genomes_project 17 91351270 91398401 + MGP_C3HHeJ_P0048468 Foxn2 protein_coding protein_coding MGP_C3HHeJ_T0048469.1 MGP_C3HHeJ_G0023835.1 mouse_genomes_project 17 91351287 91370012 + MGP_C3HHeJ_P0048469 Foxn2 protein_coding protein_coding MGP_C3HHeJ_T0048470.1 MGP_C3HHeJ_G0023835.1 mouse_genomes_project 17 91351310 91385614 + Foxn2 protein_coding retained_intron MGP_C3HHeJ_T0048471.1 MGP_C3HHeJ_G0023835.1 mouse_genomes_project 17 91351327 91395124 + MGP_C3HHeJ_P0048471 Foxn2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046469.1 MGP_C3HHeJ_G0023225.1 mouse_genomes_project 17 31760812 31779736 - MGP_C3HHeJ_P0046469 Akap8 protein_coding protein_coding MGP_C3HHeJ_T0006828.1 MGP_C3HHeJ_G0005618.1 mouse_genomes_project 17 24655239 24835022 + lincRNA lincRNA MGP_C3HHeJ_T0047757.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48840130 48902566 + MGP_C3HHeJ_P0047757 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047758.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48840700 48896210 + MGP_C3HHeJ_P0047758 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047759.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48841027 48902562 + MGP_C3HHeJ_P0047759 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047760.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48842002 48899207 + MGP_C3HHeJ_P0047760 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047761.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48857355 48896210 + MGP_C3HHeJ_P0047761 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047762.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48863009 48896322 + MGP_C3HHeJ_P0047762 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047763.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48867006 48896423 + MGP_C3HHeJ_P0047763 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047764.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48873081 48896425 + MGP_C3HHeJ_P0047764 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047765.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48873081 48896427 + MGP_C3HHeJ_P0047765 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047766.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48886724 48896503 + MGP_C3HHeJ_P0047766 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047767.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48895845 48902562 + MGP_C3HHeJ_P0047767 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047768.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48896280 48902563 + MGP_C3HHeJ_P0047768 Tfeb protein_coding protein_coding MGP_C3HHeJ_T0047769.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48897694 48899853 + Tfeb protein_coding processed_transcript MGP_C3HHeJ_T0047770.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48898036 48899075 + Tfeb protein_coding retained_intron MGP_C3HHeJ_T0047771.1 MGP_C3HHeJ_G0023582.1 mouse_genomes_project 17 48899577 48901760 + Tfeb protein_coding retained_intron MGP_C3HHeJ_T0045101.1 MGP_C3HHeJ_G0022834.1 mouse_genomes_project 17 2136572 2244143 + Arid1b protein_coding processed_transcript MGP_C3HHeJ_T0045102.1 MGP_C3HHeJ_G0022834.1 mouse_genomes_project 17 2137245 2498143 + MGP_C3HHeJ_P0045102 Arid1b protein_coding protein_coding MGP_C3HHeJ_T0045103.1 MGP_C3HHeJ_G0022834.1 mouse_genomes_project 17 2137401 2497725 + MGP_C3HHeJ_P0045103 Arid1b protein_coding protein_coding MGP_C3HHeJ_T0045104.1 MGP_C3HHeJ_G0022834.1 mouse_genomes_project 17 2138735 2244596 + Arid1b protein_coding retained_intron MGP_C3HHeJ_T0045105.1 MGP_C3HHeJ_G0022834.1 mouse_genomes_project 17 2183048 2275702 + Arid1b protein_coding retained_intron MGP_C3HHeJ_T0047682.1 MGP_C3HHeJ_G0023562.1 mouse_genomes_project 17 47934833 47936676 + MGP_C3HHeJ_P0047682 Tbcc protein_coding protein_coding MGP_C3HHeJ_T0006885.1 MGP_C3HHeJ_G0005661.1 mouse_genomes_project 17 61640221 61769958 - Gm29051 lincRNA lincRNA MGP_C3HHeJ_T0046938.1 MGP_C3HHeJ_G0023330.1 mouse_genomes_project 17 34809511 34817355 + MGP_C3HHeJ_P0046938 Hspa1l protein_coding protein_coding MGP_C3HHeJ_T0045501.1 MGP_C3HHeJ_G0022989.1 mouse_genomes_project 17 22382826 22385908 + MGP_C3HHeJ_P0045501 Cldn6 protein_coding protein_coding MGP_C3HHeJ_T0000963.1 MGP_C3HHeJ_G0000900.1 mouse_genomes_project 17 55629500 55629826 + TEC TEC MGP_C3HHeJ_T0101855.1 MGP_C3HHeJ_G0039820.1 mouse_genomes_project 17 37618993 37620931 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0045373.1 MGP_C3HHeJ_G0022917.1 mouse_genomes_project 17 16276419 16291211 - MGP_C3HHeJ_P0045373 protein_coding protein_coding MGP_C3HHeJ_T0046110.1 MGP_C3HHeJ_G0023145.1 mouse_genomes_project 17 26551264 26559225 + MGP_C3HHeJ_P0046110 protein_coding protein_coding MGP_C3HHeJ_T0046111.1 MGP_C3HHeJ_G0023145.1 mouse_genomes_project 17 26558481 26558601 + MGP_C3HHeJ_P0046111 protein_coding protein_coding MGP_C3HHeJ_T0046331.1 MGP_C3HHeJ_G0023189.1 mouse_genomes_project 17 28656526 28661811 + MGP_C3HHeJ_P0046331 Pim1 protein_coding protein_coding MGP_C3HHeJ_T0006838.1 MGP_C3HHeJ_G0005627.1 mouse_genomes_project 17 28142472 28143719 - Gm16196 lincRNA lincRNA MGP_C3HHeJ_T0006855.1 MGP_C3HHeJ_G0005640.1 mouse_genomes_project 17 33874665 33888576 - Gm20513 lincRNA lincRNA MGP_C3HHeJ_T0047431.1 MGP_C3HHeJ_G0023487.1 mouse_genomes_project 17 41525616 41555669 + MGP_C3HHeJ_P0047431 Rhag protein_coding protein_coding MGP_C3HHeJ_T0045830.1 MGP_C3HHeJ_G0023077.1 mouse_genomes_project 17 24211222 24212767 + MGP_C3HHeJ_P0045830 Tpsb2 protein_coding protein_coding MGP_C3HHeJ_T0101790.1 MGP_C3HHeJ_G0039755.1 mouse_genomes_project 17 18239570 18240473 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046037.1 MGP_C3HHeJ_G0023124.1 mouse_genomes_project 17 25324996 25351950 + MGP_C3HHeJ_P0046037 Neurl1b protein_coding protein_coding MGP_C3HHeJ_T0046038.1 MGP_C3HHeJ_G0023124.1 mouse_genomes_project 17 25324996 25351950 + MGP_C3HHeJ_P0046038 Neurl1b protein_coding protein_coding MGP_C3HHeJ_T0046039.1 MGP_C3HHeJ_G0023124.1 mouse_genomes_project 17 25325077 25356438 + MGP_C3HHeJ_P0046039 Neurl1b protein_coding protein_coding MGP_C3HHeJ_T0047049.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35022762 35023631 - Aif1 protein_coding retained_intron MGP_C3HHeJ_T0047050.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35022762 35024592 - MGP_C3HHeJ_P0047050 Aif1 protein_coding protein_coding MGP_C3HHeJ_T0047051.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35022763 35028686 - MGP_C3HHeJ_P0047051 Aif1 protein_coding protein_coding MGP_C3HHeJ_T0047052.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35022765 35025051 - MGP_C3HHeJ_P0047052 Aif1 protein_coding protein_coding MGP_C3HHeJ_T0047053.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35022767 35028753 - Aif1 protein_coding processed_transcript MGP_C3HHeJ_T0047054.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35023294 35024404 - MGP_C3HHeJ_P0047054 Aif1 protein_coding protein_coding MGP_C3HHeJ_T0047055.1 MGP_C3HHeJ_G0023352.1 mouse_genomes_project 17 35024302 35028686 - Aif1 protein_coding retained_intron MGP_C3HHeJ_T0000949.1 MGP_C3HHeJ_G0000887.1 mouse_genomes_project 17 9285632 9292103 - TEC TEC MGP_C3HHeJ_T0047315.1 MGP_C3HHeJ_G0023417.1 mouse_genomes_project 17 37087145 37095003 + MGP_C3HHeJ_P0047315 Znrd1as protein_coding protein_coding MGP_C3HHeJ_T0047316.1 MGP_C3HHeJ_G0023417.1 mouse_genomes_project 17 37087172 37094294 + Znrd1as protein_coding retained_intron MGP_C3HHeJ_T0047317.1 MGP_C3HHeJ_G0023417.1 mouse_genomes_project 17 37087194 37095002 + MGP_C3HHeJ_P0047317 Znrd1as protein_coding protein_coding MGP_C3HHeJ_T0047677.1 MGP_C3HHeJ_G0023558.1 mouse_genomes_project 17 47803319 47804092 + MGP_C3HHeJ_P0047677 2310039H08Rik protein_coding protein_coding MGP_C3HHeJ_T0047280.1 MGP_C3HHeJ_G0023404.1 mouse_genomes_project 17 36671508 36673680 + MGP_C3HHeJ_P0047280 H2-M11 protein_coding protein_coding MGP_C3HHeJ_T0046385.1 MGP_C3HHeJ_G0023206.1 mouse_genomes_project 17 30502034 30505236 - MGP_C3HHeJ_P0046385 Tff2 protein_coding protein_coding MGP_C3HHeJ_T0046277.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28094134 28134276 - MGP_C3HHeJ_P0046277 protein_coding protein_coding MGP_C3HHeJ_T0046278.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28094266 28096327 - protein_coding processed_transcript MGP_C3HHeJ_T0046279.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28095486 28134276 - MGP_C3HHeJ_P0046279 protein_coding protein_coding MGP_C3HHeJ_T0046280.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28096188 28106199 - protein_coding retained_intron MGP_C3HHeJ_T0046281.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28096341 28097969 - protein_coding processed_transcript MGP_C3HHeJ_T0046282.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28097531 28106482 - protein_coding retained_intron MGP_C3HHeJ_T0046283.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28097592 28103463 - protein_coding processed_transcript MGP_C3HHeJ_T0046284.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28097592 28103998 - protein_coding processed_transcript MGP_C3HHeJ_T0046285.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28097820 28103748 - protein_coding processed_transcript MGP_C3HHeJ_T0046286.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28101380 28103733 - protein_coding processed_transcript MGP_C3HHeJ_T0046287.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28103753 28134284 - protein_coding processed_transcript MGP_C3HHeJ_T0046288.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28111938 28115420 - protein_coding processed_transcript MGP_C3HHeJ_T0046289.1 MGP_C3HHeJ_G0023179.1 mouse_genomes_project 17 28122811 28134235 - protein_coding processed_transcript MGP_C3HHeJ_T0047403.1 MGP_C3HHeJ_G0023467.1 mouse_genomes_project 17 38528592 38542889 + MGP_C3HHeJ_P0047403 Olfr138 protein_coding protein_coding MGP_C3HHeJ_T0047404.1 MGP_C3HHeJ_G0023467.1 mouse_genomes_project 17 38528593 38543749 + MGP_C3HHeJ_P0047404 Olfr138 protein_coding protein_coding MGP_C3HHeJ_T0047405.1 MGP_C3HHeJ_G0023467.1 mouse_genomes_project 17 38528603 38543179 + MGP_C3HHeJ_P0047405 Olfr138 protein_coding protein_coding MGP_C3HHeJ_T0047406.1 MGP_C3HHeJ_G0023467.1 mouse_genomes_project 17 38542810 38543749 + MGP_C3HHeJ_P0047406 Olfr138 protein_coding protein_coding MGP_C3HHeJ_T0045099.1 MGP_C3HHeJ_G0022832.1 mouse_genomes_project 17 620421 621081 + MGP_C3HHeJ_P0045099 Cldn20 protein_coding protein_coding MGP_C3HHeJ_T0045148.1 MGP_C3HHeJ_G0022846.1 mouse_genomes_project 17 3604104 4135433 + MGP_C3HHeJ_P0045148 Sytl3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0045152.1 MGP_C3HHeJ_G0022846.1 mouse_genomes_project 17 4103176 4135433 + MGP_C3HHeJ_P0045152 Sytl3 protein_coding protein_coding MGP_C3HHeJ_T0047354.1 MGP_C3HHeJ_G0023424.1 mouse_genomes_project 17 37238344 37239283 - MGP_C3HHeJ_P0047354 Olfr91 protein_coding protein_coding MGP_C3HHeJ_T0046112.1 MGP_C3HHeJ_G0023146.1 mouse_genomes_project 17 26559134 26561292 - MGP_C3HHeJ_P0046112 AI413582 protein_coding protein_coding MGP_C3HHeJ_T0046113.1 MGP_C3HHeJ_G0023146.1 mouse_genomes_project 17 26559330 26561268 - MGP_C3HHeJ_P0046113 AI413582 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0046114.1 MGP_C3HHeJ_G0023146.1 mouse_genomes_project 17 26559332 26561309 - AI413582 protein_coding retained_intron MGP_C3HHeJ_T0046115.1 MGP_C3HHeJ_G0023146.1 mouse_genomes_project 17 26560241 26561227 - AI413582 protein_coding processed_transcript MGP_C3HHeJ_T0046821.1 MGP_C3HHeJ_G0023306.1 mouse_genomes_project 17 34310354 34312729 - MGP_C3HHeJ_P0046821 Rnf5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0046822.1 MGP_C3HHeJ_G0023306.1 mouse_genomes_project 17 34310571 34312632 - Rnf5 protein_coding retained_intron MGP_C3HHeJ_T0046823.1 MGP_C3HHeJ_G0023306.1 mouse_genomes_project 17 34311039 34312917 - Rnf5 protein_coding retained_intron MGP_C3HHeJ_T0003673.1 MGP_C3HHeJ_G0003308.1 mouse_genomes_project 17 32313757 32325560 + Gm26693 antisense antisense MGP_C3HHeJ_T0013135.1 MGP_C3HHeJ_G0011239.1 mouse_genomes_project 17 55334188 55334791 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048015.1 MGP_C3HHeJ_G0023668.1 mouse_genomes_project 17 58556656 58562820 + MGP_C3HHeJ_P0048015 Clpp protein_coding protein_coding MGP_C3HHeJ_T0048226.1 MGP_C3HHeJ_G0023735.1 mouse_genomes_project 17 73823966 73835995 + Fam179a protein_coding processed_transcript MGP_C3HHeJ_T0048227.1 MGP_C3HHeJ_G0023735.1 mouse_genomes_project 17 73823966 73881794 + MGP_C3HHeJ_P0048227 Fam179a protein_coding protein_coding MGP_C3HHeJ_T0048228.1 MGP_C3HHeJ_G0023735.1 mouse_genomes_project 17 73823970 73839979 + Fam179a protein_coding processed_transcript MGP_C3HHeJ_T0048229.1 MGP_C3HHeJ_G0023735.1 mouse_genomes_project 17 73835627 73881794 + MGP_C3HHeJ_P0048229 Fam179a protein_coding protein_coding MGP_C3HHeJ_T0048230.1 MGP_C3HHeJ_G0023735.1 mouse_genomes_project 17 73837515 73881668 + MGP_C3HHeJ_P0048230 Fam179a protein_coding protein_coding MGP_C3HHeJ_T0048231.1 MGP_C3HHeJ_G0023735.1 mouse_genomes_project 17 73865283 73881794 + Fam179a protein_coding retained_intron MGP_C3HHeJ_T0046131.1 MGP_C3HHeJ_G0023149.1 mouse_genomes_project 17 26658531 26716043 + MGP_C3HHeJ_P0046131 Pacsin1 protein_coding protein_coding MGP_C3HHeJ_T0046132.1 MGP_C3HHeJ_G0023149.1 mouse_genomes_project 17 26658610 26718485 + MGP_C3HHeJ_P0046132 Pacsin1 protein_coding protein_coding MGP_C3HHeJ_T0046133.1 MGP_C3HHeJ_G0023149.1 mouse_genomes_project 17 26658665 26716059 + MGP_C3HHeJ_P0046133 Pacsin1 protein_coding protein_coding MGP_C3HHeJ_T0046134.1 MGP_C3HHeJ_G0023149.1 mouse_genomes_project 17 26693574 26716043 + MGP_C3HHeJ_P0046134 Pacsin1 protein_coding protein_coding MGP_C3HHeJ_T0046135.1 MGP_C3HHeJ_G0023149.1 mouse_genomes_project 17 26693604 26695387 + Pacsin1 protein_coding processed_transcript MGP_C3HHeJ_T0013064.1 MGP_C3HHeJ_G0011168.1 mouse_genomes_project 17 6224618 6225174 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047368.1 MGP_C3HHeJ_G0023437.1 mouse_genomes_project 17 37611307 37612342 + MGP_C3HHeJ_P0047368 Olfr107 protein_coding protein_coding MGP_C3HHeJ_T0003662.1 MGP_C3HHeJ_G0003301.1 mouse_genomes_project 17 27014918 27036512 - Gm15598 antisense antisense MGP_C3HHeJ_T0047995.1 MGP_C3HHeJ_G0023654.1 mouse_genomes_project 17 58156643 58157247 + MGP_C3HHeJ_P0047995 Rpl36 protein_coding protein_coding MGP_C3HHeJ_T0101854.1 MGP_C3HHeJ_G0039819.1 mouse_genomes_project 17 37613593 37614315 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0046530.1 MGP_C3HHeJ_G0023242.1 mouse_genomes_project 17 32473435 32486047 + MGP_C3HHeJ_P0046530 Zfp472 protein_coding protein_coding MGP_C3HHeJ_T0045296.1 MGP_C3HHeJ_G0022892.1 mouse_genomes_project 17 11917163 11925800 - MGP_C3HHeJ_P0045296 Dact2 protein_coding protein_coding MGP_C3HHeJ_T0045297.1 MGP_C3HHeJ_G0022892.1 mouse_genomes_project 17 11917632 11926192 - MGP_C3HHeJ_P0045297 Dact2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048290.1 MGP_C3HHeJ_G0023757.1 mouse_genomes_project 17 77731803 77833545 + MGP_C3HHeJ_P0048290 Rasgrp3 protein_coding protein_coding MGP_C3HHeJ_T0048291.1 MGP_C3HHeJ_G0023757.1 mouse_genomes_project 17 77763428 77833545 + MGP_C3HHeJ_P0048291 Rasgrp3 protein_coding protein_coding MGP_C3HHeJ_T0013159.1 MGP_C3HHeJ_G0011263.1 mouse_genomes_project 17 93509655 93509990 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0047789.1 MGP_C3HHeJ_G0023585.1 mouse_genomes_project 17 49165496 49167048 - MGP_C3HHeJ_P0047789 1700122O11Rik protein_coding protein_coding MGP_C3HHeJ_T0046548.1 MGP_C3HHeJ_G0023253.1 mouse_genomes_project 17 32848585 32884635 - Zfp101 protein_coding processed_transcript MGP_C3HHeJ_T0046549.1 MGP_C3HHeJ_G0023253.1 mouse_genomes_project 17 32868230 32884898 - MGP_C3HHeJ_P0046549 Zfp101 protein_coding protein_coding MGP_C3HHeJ_T0046550.1 MGP_C3HHeJ_G0023253.1 mouse_genomes_project 17 32870330 32884614 - MGP_C3HHeJ_P0046550 Zfp101 protein_coding protein_coding MGP_C3HHeJ_T0046551.1 MGP_C3HHeJ_G0023253.1 mouse_genomes_project 17 32871040 32884880 - MGP_C3HHeJ_P0046551 Zfp101 protein_coding protein_coding MGP_C3HHeJ_T0046552.1 MGP_C3HHeJ_G0023253.1 mouse_genomes_project 17 32874214 32884862 - Zfp101 protein_coding processed_transcript MGP_C3HHeJ_T0046849.1 MGP_C3HHeJ_G0023311.1 mouse_genomes_project 17 34356445 34358006 + MGP_C3HHeJ_P0046849 Fkbpl protein_coding protein_coding MGP_C3HHeJ_T0046850.1 MGP_C3HHeJ_G0023311.1 mouse_genomes_project 17 34356522 34357004 + MGP_C3HHeJ_P0046850 Fkbpl protein_coding protein_coding MGP_C3HHeJ_T0045994.1 MGP_C3HHeJ_G0023116.1 mouse_genomes_project 17 25028808 25090311 + MGP_C3HHeJ_P0045994 Axin1 protein_coding protein_coding MGP_C3HHeJ_T0045995.1 MGP_C3HHeJ_G0023116.1 mouse_genomes_project 17 25028948 25089741 + MGP_C3HHeJ_P0045995 Axin1 protein_coding protein_coding MGP_C3HHeJ_T0045996.1 MGP_C3HHeJ_G0023116.1 mouse_genomes_project 17 25029070 25089794 + MGP_C3HHeJ_P0045996 Axin1 protein_coding protein_coding MGP_C3HHeJ_T0045997.1 MGP_C3HHeJ_G0023116.1 mouse_genomes_project 17 25033472 25078827 + MGP_C3HHeJ_P0045997 Axin1 protein_coding protein_coding MGP_C3HHeJ_T0045998.1 MGP_C3HHeJ_G0023116.1 mouse_genomes_project 17 25082659 25083302 + Axin1 protein_coding retained_intron MGP_C3HHeJ_T0013129.1 MGP_C3HHeJ_G0011233.1 mouse_genomes_project 17 55107381 55107743 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0045468.1 MGP_C3HHeJ_G0022978.1 mouse_genomes_project 17 22029610 22044251 + MGP_C3HHeJ_P0045468 protein_coding protein_coding MGP_C3HHeJ_T0011346.1 MGP_C3HHeJ_G0009479.1 mouse_genomes_project 17 88306298 88306497 + Gm27502 misc_RNA misc_RNA MGP_C3HHeJ_T0049120.1 MGP_C3HHeJ_G0024067.1 mouse_genomes_project 18 35855975 36038766 + MGP_C3HHeJ_P0049120 Pcdhga2 protein_coding protein_coding MGP_C3HHeJ_T0006929.1 MGP_C3HHeJ_G0005692.1 mouse_genomes_project 18 30129383 30136323 + Gm26717 lincRNA lincRNA MGP_C3HHeJ_T0099110.1 MGP_C3HHeJ_G0037304.1 mouse_genomes_project 18 6696668 6696771 - Gm23350 snRNA snRNA MGP_C3HHeJ_T0048950.1 MGP_C3HHeJ_G0023990.1 mouse_genomes_project 18 33287899 33293914 - MGP_C3HHeJ_P0048950 Lrrtm2 protein_coding protein_coding MGP_C3HHeJ_T0013195.1 MGP_C3HHeJ_G0011299.1 mouse_genomes_project 18 37025106 37026976 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048943.1 MGP_C3HHeJ_G0023987.1 mouse_genomes_project 18 32955817 32987521 - MGP_C3HHeJ_P0048943 Etf1 protein_coding protein_coding MGP_C3HHeJ_T0048944.1 MGP_C3HHeJ_G0023987.1 mouse_genomes_project 18 32987347 32987455 - MGP_C3HHeJ_P0048944 Etf1 protein_coding protein_coding MGP_C3HHeJ_T0048620.1 MGP_C3HHeJ_G0023858.1 mouse_genomes_project 18 3308919 3393859 - MGP_C3HHeJ_P0048620 Epc1 protein_coding protein_coding MGP_C3HHeJ_T0048621.1 MGP_C3HHeJ_G0023858.1 mouse_genomes_project 18 3308921 3364846 - MGP_C3HHeJ_P0048621 Epc1 protein_coding protein_coding MGP_C3HHeJ_T0048622.1 MGP_C3HHeJ_G0023858.1 mouse_genomes_project 18 3312560 3314866 - MGP_C3HHeJ_P0048622 Epc1 protein_coding protein_coding MGP_C3HHeJ_T0048623.1 MGP_C3HHeJ_G0023858.1 mouse_genomes_project 18 3363149 3364846 - MGP_C3HHeJ_P0048623 Epc1 protein_coding protein_coding MGP_C3HHeJ_T0017397.1 MGP_C3HHeJ_G0015123.1 mouse_genomes_project 18 35938559 35951255 - Gm26672 processed_transcript antisense MGP_C3HHeJ_T0017398.1 MGP_C3HHeJ_G0015123.1 mouse_genomes_project 18 35947396 35963139 - Gm26672 processed_transcript antisense MGP_C3HHeJ_T0017399.1 MGP_C3HHeJ_G0015123.1 mouse_genomes_project 18 35947549 35963840 - Gm26672 processed_transcript antisense MGP_C3HHeJ_T0017400.1 MGP_C3HHeJ_G0015123.1 mouse_genomes_project 18 35950118 35951649 - Gm26672 processed_transcript retained_intron MGP_C3HHeJ_T0049618.1 MGP_C3HHeJ_G0024258.1 mouse_genomes_project 18 66789650 66835922 - MGP_C3HHeJ_P0049618 Afg3l2 protein_coding protein_coding MGP_C3HHeJ_T0006943.1 MGP_C3HHeJ_G0005702.1 mouse_genomes_project 18 43252519 43255825 + Gm43425 lincRNA lincRNA MGP_C3HHeJ_T0048826.1 MGP_C3HHeJ_G0023937.1 mouse_genomes_project 18 22381111 22430103 + MGP_C3HHeJ_P0048826 Mocos protein_coding protein_coding MGP_C3HHeJ_T0017383.1 MGP_C3HHeJ_G0015120.1 mouse_genomes_project 18 2353773 2452284 - Gm10125 processed_transcript antisense MGP_C3HHeJ_T0017384.1 MGP_C3HHeJ_G0015120.1 mouse_genomes_project 18 2378291 2380976 - Gm10125 processed_transcript retained_intron MGP_C3HHeJ_T0017385.1 MGP_C3HHeJ_G0015120.1 mouse_genomes_project 18 2385188 2452284 - Gm10125 processed_transcript processed_transcript MGP_C3HHeJ_T0017386.1 MGP_C3HHeJ_G0015120.1 mouse_genomes_project 18 2385260 2452082 - Gm10125 processed_transcript antisense MGP_C3HHeJ_T0017387.1 MGP_C3HHeJ_G0015120.1 mouse_genomes_project 18 2430017 2452273 - Gm10125 processed_transcript antisense MGP_C3HHeJ_T0017388.1 MGP_C3HHeJ_G0015120.1 mouse_genomes_project 18 2430017 2453401 - Gm10125 processed_transcript antisense MGP_C3HHeJ_T0049354.1 MGP_C3HHeJ_G0024154.1 mouse_genomes_project 18 48740713 48812364 + MGP_C3HHeJ_P0049354 Hsd17b4 protein_coding protein_coding MGP_C3HHeJ_T0049355.1 MGP_C3HHeJ_G0024154.1 mouse_genomes_project 18 48741006 48755278 + Hsd17b4 protein_coding processed_transcript MGP_C3HHeJ_T0049356.1 MGP_C3HHeJ_G0024154.1 mouse_genomes_project 18 48755034 48759100 + Hsd17b4 protein_coding retained_intron MGP_C3HHeJ_T0049357.1 MGP_C3HHeJ_G0024154.1 mouse_genomes_project 18 48807418 48812067 + Hsd17b4 protein_coding retained_intron MGP_C3HHeJ_T0048682.1 MGP_C3HHeJ_G0023880.1 mouse_genomes_project 18 8048650 8085073 + MGP_C3HHeJ_P0048682 Gata6 protein_coding protein_coding MGP_C3HHeJ_T0049074.1 MGP_C3HHeJ_G0024032.1 mouse_genomes_project 18 35154936 35358175 + MGP_C3HHeJ_P0049074 Pcdha5 protein_coding protein_coding MGP_C3HHeJ_T0011367.1 MGP_C3HHeJ_G0009500.1 mouse_genomes_project 18 58713237 58713531 - Gm26028 misc_RNA misc_RNA MGP_C3HHeJ_T0049313.1 MGP_C3HHeJ_G0024144.1 mouse_genomes_project 18 45063661 45077226 + MGP_C3HHeJ_P0049313 Eif1a protein_coding protein_coding MGP_C3HHeJ_T0049314.1 MGP_C3HHeJ_G0024144.1 mouse_genomes_project 18 45063665 45076173 + MGP_C3HHeJ_P0049314 Eif1a protein_coding protein_coding MGP_C3HHeJ_T0006927.1 MGP_C3HHeJ_G0005690.1 mouse_genomes_project 18 29745274 29753112 - Gm26533 lincRNA lincRNA MGP_C3HHeJ_T0010154.1 MGP_C3HHeJ_G0008287.1 mouse_genomes_project 18 7770882 7770954 - Mir1a-2 miRNA miRNA MGP_C3HHeJ_T0099135.1 MGP_C3HHeJ_G0037329.1 mouse_genomes_project 18 64022104 64022204 - Gm24504 snRNA snRNA MGP_C3HHeJ_T0101863.1 MGP_C3HHeJ_G0039828.1 mouse_genomes_project 18 41875671 41878026 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0099128.1 MGP_C3HHeJ_G0037322.1 mouse_genomes_project 18 56555619 56555725 - Gm26038 snRNA snRNA MGP_C3HHeJ_T0099142.1 MGP_C3HHeJ_G0037336.1 mouse_genomes_project 18 83259746 83259912 - Gm24720 snRNA snRNA MGP_C3HHeJ_T0013191.1 MGP_C3HHeJ_G0011295.1 mouse_genomes_project 18 35630950 35631821 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049486.1 MGP_C3HHeJ_G0024211.1 mouse_genomes_project 18 60277114 60297249 - MGP_C3HHeJ_P0049486 Slc26a2 protein_coding protein_coding MGP_C3HHeJ_T0049487.1 MGP_C3HHeJ_G0024211.1 mouse_genomes_project 18 60282861 60286006 - MGP_C3HHeJ_P0049487 Slc26a2 protein_coding protein_coding MGP_C3HHeJ_T0049488.1 MGP_C3HHeJ_G0024211.1 mouse_genomes_project 18 60287341 60297017 - MGP_C3HHeJ_P0049488 Slc26a2 protein_coding protein_coding MGP_C3HHeJ_T0049489.1 MGP_C3HHeJ_G0024211.1 mouse_genomes_project 18 60292826 60296994 - Slc26a2 protein_coding retained_intron MGP_C3HHeJ_T0049479.1 MGP_C3HHeJ_G0024207.1 mouse_genomes_project 18 60097208 60114309 - MGP_C3HHeJ_P0049479 Cdx1 protein_coding protein_coding MGP_C3HHeJ_T0100362.1 MGP_C3HHeJ_G0038556.1 mouse_genomes_project 18 7530379 7530497 - Gm24894 snoRNA snoRNA MGP_C3HHeJ_T0049715.1 MGP_C3HHeJ_G0024278.1 mouse_genomes_project 18 69947613 69976476 + MGP_C3HHeJ_P0049715 Stard6 protein_coding protein_coding MGP_C3HHeJ_T0049716.1 MGP_C3HHeJ_G0024278.1 mouse_genomes_project 18 69947731 69976221 + MGP_C3HHeJ_P0049716 Stard6 protein_coding protein_coding MGP_C3HHeJ_T0049717.1 MGP_C3HHeJ_G0024278.1 mouse_genomes_project 18 69947787 69976229 + MGP_C3HHeJ_P0049717 Stard6 protein_coding protein_coding MGP_C3HHeJ_T0049718.1 MGP_C3HHeJ_G0024278.1 mouse_genomes_project 18 69947825 69976225 + MGP_C3HHeJ_P0049718 Stard6 protein_coding protein_coding MGP_C3HHeJ_T0049719.1 MGP_C3HHeJ_G0024278.1 mouse_genomes_project 18 69948176 69960811 + MGP_C3HHeJ_P0049719 Stard6 protein_coding protein_coding MGP_C3HHeJ_T0049720.1 MGP_C3HHeJ_G0024278.1 mouse_genomes_project 18 69948359 69974048 + MGP_C3HHeJ_P0049720 Stard6 protein_coding protein_coding MGP_C3HHeJ_T0049911.1 MGP_C3HHeJ_G0024337.1 mouse_genomes_project 18 82794006 82895752 + MGP_C3HHeJ_P0049911 Zfp516 protein_coding protein_coding MGP_C3HHeJ_T0049912.1 MGP_C3HHeJ_G0024337.1 mouse_genomes_project 18 82798600 82895752 + MGP_C3HHeJ_P0049912 Zfp516 protein_coding protein_coding MGP_C3HHeJ_T0048982.1 MGP_C3HHeJ_G0023996.1 mouse_genomes_project 18 33714050 33726687 - MGP_C3HHeJ_P0048982 Slc23a1 protein_coding protein_coding MGP_C3HHeJ_T0048983.1 MGP_C3HHeJ_G0023996.1 mouse_genomes_project 18 33718820 33726639 - MGP_C3HHeJ_P0048983 Slc23a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048984.1 MGP_C3HHeJ_G0023996.1 mouse_genomes_project 18 33719516 33722049 - Slc23a1 protein_coding processed_transcript MGP_C3HHeJ_T0048985.1 MGP_C3HHeJ_G0023996.1 mouse_genomes_project 18 33722266 33726679 - Slc23a1 protein_coding processed_transcript MGP_C3HHeJ_T0006962.1 MGP_C3HHeJ_G0005717.1 mouse_genomes_project 18 75444235 75445504 + 1700034B16Rik lincRNA lincRNA MGP_C3HHeJ_T0100391.1 MGP_C3HHeJ_G0038585.1 mouse_genomes_project 18 77351562 77351694 + Gm26014 snoRNA snoRNA MGP_C3HHeJ_T0013197.1 MGP_C3HHeJ_G0011301.1 mouse_genomes_project 18 39049508 39049949 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049783.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75924481 75985773 + MGP_C3HHeJ_P0049783 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0049784.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75924602 75984772 + MGP_C3HHeJ_P0049784 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0049785.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75924947 75978492 + MGP_C3HHeJ_P0049785 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0049786.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75925075 75979935 + MGP_C3HHeJ_P0049786 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0049787.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75944038 75985336 + MGP_C3HHeJ_P0049787 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0049788.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75945411 75982684 + MGP_C3HHeJ_P0049788 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0049789.1 MGP_C3HHeJ_G0024302.1 mouse_genomes_project 18 75945411 75979879 + MGP_C3HHeJ_P0049789 Smad2 protein_coding protein_coding MGP_C3HHeJ_T0048941.1 MGP_C3HHeJ_G0023986.1 mouse_genomes_project 18 32910059 32915931 + MGP_C3HHeJ_P0048941 Egr1 protein_coding protein_coding MGP_C3HHeJ_T0048942.1 MGP_C3HHeJ_G0023986.1 mouse_genomes_project 18 32911439 32915903 + MGP_C3HHeJ_P0048942 Egr1 protein_coding protein_coding MGP_C3HHeJ_T0098383.1 MGP_C3HHeJ_G0036589.1 mouse_genomes_project 18 2438403 2440634 - Gm26575 sense_intronic sense_intronic MGP_C3HHeJ_T0099124.1 MGP_C3HHeJ_G0037318.1 mouse_genomes_project 18 49907974 49908081 - Gm25739 snRNA snRNA MGP_C3HHeJ_T0049046.1 MGP_C3HHeJ_G0024017.1 mouse_genomes_project 18 34866823 34878736 - MGP_C3HHeJ_P0049046 E230025N22Rik protein_coding protein_coding MGP_C3HHeJ_T0099140.1 MGP_C3HHeJ_G0037334.1 mouse_genomes_project 18 80811938 80812056 + Gm25718 snRNA snRNA MGP_C3HHeJ_T0049714.1 MGP_C3HHeJ_G0024277.1 mouse_genomes_project 18 69927492 69947640 - MGP_C3HHeJ_P0049714 4930503L19Rik protein_coding protein_coding MGP_C3HHeJ_T0049048.1 MGP_C3HHeJ_G0024019.1 mouse_genomes_project 18 34926478 34935435 + MGP_C3HHeJ_P0049048 Tmco6 protein_coding protein_coding MGP_C3HHeJ_T0101862.1 MGP_C3HHeJ_G0039827.1 mouse_genomes_project 18 35205262 35206049 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0048774.1 MGP_C3HHeJ_G0023920.1 mouse_genomes_project 18 18762391 18929798 - MGP_C3HHeJ_P0048774 Garem protein_coding protein_coding MGP_C3HHeJ_T0099127.1 MGP_C3HHeJ_G0037321.1 mouse_genomes_project 18 53939220 53939300 + Gm22597 snRNA snRNA MGP_C3HHeJ_T0049021.1 MGP_C3HHeJ_G0024010.1 mouse_genomes_project 18 34582485 34633286 - MGP_C3HHeJ_P0049021 Pfdn1 protein_coding protein_coding MGP_C3HHeJ_T0010172.1 MGP_C3HHeJ_G0008305.1 mouse_genomes_project 18 56569373 56569469 + Gm44491 miRNA miRNA MGP_C3HHeJ_T0048669.1 MGP_C3HHeJ_G0023876.1 mouse_genomes_project 18 7546296 7573930 - Esco1 protein_coding processed_transcript MGP_C3HHeJ_T0048670.1 MGP_C3HHeJ_G0023876.1 mouse_genomes_project 18 7546305 7589924 - MGP_C3HHeJ_P0048670 Esco1 protein_coding protein_coding MGP_C3HHeJ_T0048671.1 MGP_C3HHeJ_G0023876.1 mouse_genomes_project 18 7546313 7590147 - MGP_C3HHeJ_P0048671 Esco1 protein_coding protein_coding MGP_C3HHeJ_T0048672.1 MGP_C3HHeJ_G0023876.1 mouse_genomes_project 18 7546313 7589904 - MGP_C3HHeJ_P0048672 Esco1 protein_coding protein_coding MGP_C3HHeJ_T0048673.1 MGP_C3HHeJ_G0023876.1 mouse_genomes_project 18 7546636 7589904 - Esco1 protein_coding processed_transcript MGP_C3HHeJ_T0049050.1 MGP_C3HHeJ_G0024021.1 mouse_genomes_project 18 34937671 34950648 + MGP_C3HHeJ_P0049050 Ik protein_coding protein_coding MGP_C3HHeJ_T0049051.1 MGP_C3HHeJ_G0024021.1 mouse_genomes_project 18 34937788 34950651 + MGP_C3HHeJ_P0049051 Ik protein_coding unknown_likely_coding MGP_C3HHeJ_T0100394.1 MGP_C3HHeJ_G0038588.1 mouse_genomes_project 18 87948513 87948647 - Gm24987 snoRNA snoRNA MGP_C3HHeJ_T0101161.1 MGP_C3HHeJ_G0039316.1 mouse_genomes_project 18 35839092 35839567 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101162.1 MGP_C3HHeJ_G0039316.1 mouse_genomes_project 18 35839412 35840832 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0006933.1 MGP_C3HHeJ_G0005696.1 mouse_genomes_project 18 31791943 31793041 + Epb41l4aos lincRNA lincRNA MGP_C3HHeJ_T0006934.1 MGP_C3HHeJ_G0005696.1 mouse_genomes_project 18 31791990 31793020 + Epb41l4aos lincRNA lincRNA MGP_C3HHeJ_T0100369.1 MGP_C3HHeJ_G0038563.1 mouse_genomes_project 18 28374827 28374939 + Gm22870 snoRNA snoRNA MGP_C3HHeJ_T0010162.1 MGP_C3HHeJ_G0008295.1 mouse_genomes_project 18 35004647 35004757 + Gm23424 miRNA miRNA MGP_C3HHeJ_T0010177.1 MGP_C3HHeJ_G0008310.1 mouse_genomes_project 18 60034442 60034510 + Mir6982 miRNA miRNA MGP_C3HHeJ_T0003736.1 MGP_C3HHeJ_G0003356.1 mouse_genomes_project 18 35162027 35162585 - Gm37753 antisense antisense MGP_C3HHeJ_T0049378.1 MGP_C3HHeJ_G0024167.1 mouse_genomes_project 18 51942174 52086503 + MGP_C3HHeJ_P0049378 Snx24 protein_coding protein_coding MGP_C3HHeJ_T0049379.1 MGP_C3HHeJ_G0024167.1 mouse_genomes_project 18 51942281 52086503 + MGP_C3HHeJ_P0049379 Snx24 protein_coding protein_coding MGP_C3HHeJ_T0049138.1 MGP_C3HHeJ_G0024080.1 mouse_genomes_project 18 35938999 36038769 + MGP_C3HHeJ_P0049138 Pcdhga10 protein_coding protein_coding MGP_C3HHeJ_T0049265.1 MGP_C3HHeJ_G0024119.1 mouse_genomes_project 18 41878274 41880653 - MGP_C3HHeJ_P0049265 Eif3j2 protein_coding protein_coding MGP_C3HHeJ_T0003733.1 MGP_C3HHeJ_G0003353.1 mouse_genomes_project 18 21437035 21438894 - Gm15972 antisense antisense MGP_C3HHeJ_T0049412.1 MGP_C3HHeJ_G0024180.1 mouse_genomes_project 18 56010305 56173631 + MGP_C3HHeJ_P0049412 Megf10 protein_coding protein_coding MGP_C3HHeJ_T0049413.1 MGP_C3HHeJ_G0024180.1 mouse_genomes_project 18 56020339 56168876 + MGP_C3HHeJ_P0049413 Megf10 protein_coding protein_coding MGP_C3HHeJ_T0049090.1 MGP_C3HHeJ_G0024042.1 mouse_genomes_project 18 35314003 35358175 + MGP_C3HHeJ_P0049090 Pcdhac2 protein_coding protein_coding MGP_C3HHeJ_T0049065.1 MGP_C3HHeJ_G0024027.1 mouse_genomes_project 18 35124667 35358179 + MGP_C3HHeJ_P0049065 Pcdha1 protein_coding protein_coding MGP_C3HHeJ_T0049066.1 MGP_C3HHeJ_G0024027.1 mouse_genomes_project 18 35124768 35358175 + MGP_C3HHeJ_P0049066 Pcdha1 protein_coding protein_coding MGP_C3HHeJ_T0010180.1 MGP_C3HHeJ_G0008313.1 mouse_genomes_project 18 60495967 60496033 - Mir378a miRNA miRNA MGP_C3HHeJ_T0013172.1 MGP_C3HHeJ_G0011276.1 mouse_genomes_project 18 9447533 9450058 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049183.1 MGP_C3HHeJ_G0024092.1 mouse_genomes_project 18 36390440 36416578 - MGP_C3HHeJ_P0049183 Pcdh1 protein_coding protein_coding MGP_C3HHeJ_T0049184.1 MGP_C3HHeJ_G0024092.1 mouse_genomes_project 18 36393418 36407693 - MGP_C3HHeJ_P0049184 Pcdh1 protein_coding protein_coding MGP_C3HHeJ_T0049185.1 MGP_C3HHeJ_G0024092.1 mouse_genomes_project 18 36401223 36414294 - MGP_C3HHeJ_P0049185 Pcdh1 protein_coding protein_coding MGP_C3HHeJ_T0049186.1 MGP_C3HHeJ_G0024092.1 mouse_genomes_project 18 36401223 36416502 - MGP_C3HHeJ_P0049186 Pcdh1 protein_coding protein_coding MGP_C3HHeJ_T0049187.1 MGP_C3HHeJ_G0024092.1 mouse_genomes_project 18 36407973 36415086 - MGP_C3HHeJ_P0049187 Pcdh1 protein_coding protein_coding MGP_C3HHeJ_T0049188.1 MGP_C3HHeJ_G0024092.1 mouse_genomes_project 18 36407973 36408370 - MGP_C3HHeJ_P0049188 Pcdh1 protein_coding protein_coding MGP_C3HHeJ_T0049108.1 MGP_C3HHeJ_G0024057.1 mouse_genomes_project 18 35671842 35677067 + MGP_C3HHeJ_P0049108 Pcdhb16 protein_coding protein_coding MGP_C3HHeJ_T0049069.1 MGP_C3HHeJ_G0024029.1 mouse_genomes_project 18 35140589 35358175 + MGP_C3HHeJ_P0049069 Pcdha3 protein_coding protein_coding MGP_C3HHeJ_T0049619.1 MGP_C3HHeJ_G0024259.1 mouse_genomes_project 18 66851648 66867188 + MGP_C3HHeJ_P0049619 Slmo1 protein_coding protein_coding MGP_C3HHeJ_T0013205.1 MGP_C3HHeJ_G0011309.1 mouse_genomes_project 18 51625324 51626849 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048685.1 MGP_C3HHeJ_G0023882.1 mouse_genomes_project 18 8979687 9092945 + MGP_C3HHeJ_P0048685 Cables1 protein_coding protein_coding MGP_C3HHeJ_T0099131.1 MGP_C3HHeJ_G0037325.1 mouse_genomes_project 18 62707523 62707586 + Gm23581 snRNA snRNA MGP_C3HHeJ_T0017406.1 MGP_C3HHeJ_G0015125.1 mouse_genomes_project 18 36414303 36435405 + 2010320O07Rik processed_transcript processed_transcript MGP_C3HHeJ_T0048831.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927145 23233898 + MGP_C3HHeJ_P0048831 AW554918 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048832.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927156 23237489 + MGP_C3HHeJ_P0048832 AW554918 protein_coding protein_coding MGP_C3HHeJ_T0048833.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927160 22950000 + AW554918 protein_coding processed_transcript MGP_C3HHeJ_T0048834.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927166 23048800 + AW554918 protein_coding processed_transcript MGP_C3HHeJ_T0048835.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927166 23237494 + MGP_C3HHeJ_P0048835 AW554918 protein_coding protein_coding MGP_C3HHeJ_T0048836.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927166 23237494 + MGP_C3HHeJ_P0048836 AW554918 protein_coding protein_coding MGP_C3HHeJ_T0048837.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22927169 23234069 + MGP_C3HHeJ_P0048837 AW554918 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048838.1 MGP_C3HHeJ_G0023941.1 mouse_genomes_project 18 22990565 23234265 + MGP_C3HHeJ_P0048838 AW554918 protein_coding protein_coding MGP_C3HHeJ_T0017407.1 MGP_C3HHeJ_G0015126.1 mouse_genomes_project 18 48338145 48339597 + Gm16283 processed_transcript processed_transcript MGP_C3HHeJ_T0099121.1 MGP_C3HHeJ_G0037315.1 mouse_genomes_project 18 44933988 44934082 - Gm24076 snRNA snRNA MGP_C3HHeJ_T0048878.1 MGP_C3HHeJ_G0023964.1 mouse_genomes_project 18 30846533 30875677 + MGP_C3HHeJ_P0048878 Wdr36 protein_coding protein_coding MGP_C3HHeJ_T0048879.1 MGP_C3HHeJ_G0023964.1 mouse_genomes_project 18 30846533 30875747 + MGP_C3HHeJ_P0048879 Wdr36 protein_coding protein_coding MGP_C3HHeJ_T0048915.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32631491 32658849 - MGP_C3HHeJ_P0048915 Brd8 protein_coding protein_coding MGP_C3HHeJ_T0048916.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32631491 32658849 - MGP_C3HHeJ_P0048916 Brd8 protein_coding protein_coding MGP_C3HHeJ_T0048917.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32632491 32658801 - Brd8 protein_coding retained_intron MGP_C3HHeJ_T0048918.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32632520 32658849 - MGP_C3HHeJ_P0048918 Brd8 protein_coding protein_coding MGP_C3HHeJ_T0048919.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32632843 32658835 - MGP_C3HHeJ_P0048919 Brd8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048920.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32633836 32658849 - MGP_C3HHeJ_P0048920 Brd8 protein_coding protein_coding MGP_C3HHeJ_T0048921.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32643934 32658849 - Brd8 protein_coding retained_intron MGP_C3HHeJ_T0048922.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32644918 32658802 - Brd8 protein_coding processed_transcript MGP_C3HHeJ_T0048923.1 MGP_C3HHeJ_G0023978.1 mouse_genomes_project 18 32656167 32658849 - Brd8 protein_coding retained_intron MGP_C3HHeJ_T0049296.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43706632 43728728 + Kcnn2 protein_coding processed_transcript MGP_C3HHeJ_T0049297.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43706777 44122135 + MGP_C3HHeJ_P0049297 Kcnn2 protein_coding protein_coding MGP_C3HHeJ_T0049298.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43706777 44122274 + MGP_C3HHeJ_P0049298 Kcnn2 protein_coding protein_coding MGP_C3HHeJ_T0049299.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43994780 44106946 + Kcnn2 protein_coding retained_intron MGP_C3HHeJ_T0049300.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43995122 44028346 + Kcnn2 protein_coding retained_intron MGP_C3HHeJ_T0049301.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43995465 44111613 + Kcnn2 protein_coding processed_transcript MGP_C3HHeJ_T0049302.1 MGP_C3HHeJ_G0024137.1 mouse_genomes_project 18 43995465 44122132 + MGP_C3HHeJ_P0049302 Kcnn2 protein_coding protein_coding MGP_C3HHeJ_T0049361.1 MGP_C3HHeJ_G0024158.1 mouse_genomes_project 18 50522358 50522976 - MGP_C3HHeJ_P0049361 Gm4950 protein_coding protein_coding MGP_C3HHeJ_T0048747.1 MGP_C3HHeJ_G0023903.1 mouse_genomes_project 18 13154312 13154759 + MGP_C3HHeJ_P0048747 protein_coding protein_coding MGP_C3HHeJ_T0049111.1 MGP_C3HHeJ_G0024060.1 mouse_genomes_project 18 35691014 35698161 + MGP_C3HHeJ_P0049111 Pcdhb19 protein_coding protein_coding MGP_C3HHeJ_T0049597.1 MGP_C3HHeJ_G0024247.1 mouse_genomes_project 18 65232918 65237370 - MGP_C3HHeJ_P0049597 Rax protein_coding protein_coding MGP_C3HHeJ_T0013176.1 MGP_C3HHeJ_G0011280.1 mouse_genomes_project 18 9934075 9934870 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013190.1 MGP_C3HHeJ_G0011294.1 mouse_genomes_project 18 35506876 35508140 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003735.1 MGP_C3HHeJ_G0003355.1 mouse_genomes_project 18 35147135 35147528 - Gm38225 antisense antisense MGP_C3HHeJ_T0048773.1 MGP_C3HHeJ_G0023919.1 mouse_genomes_project 18 18704010 18733127 + MGP_C3HHeJ_P0048773 Mep1b protein_coding protein_coding MGP_C3HHeJ_T0013200.1 MGP_C3HHeJ_G0011304.1 mouse_genomes_project 18 43723495 43725014 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013193.1 MGP_C3HHeJ_G0011297.1 mouse_genomes_project 18 36964915 36965029 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000973.1 MGP_C3HHeJ_G0000910.1 mouse_genomes_project 18 44550047 44550650 - TEC TEC MGP_C3HHeJ_T0099136.1 MGP_C3HHeJ_G0037330.1 mouse_genomes_project 18 65194435 65194495 - Gm25150 snRNA snRNA MGP_C3HHeJ_T0006957.1 MGP_C3HHeJ_G0005712.1 mouse_genomes_project 18 62607677 62631164 + Gm26972 lincRNA lincRNA MGP_C3HHeJ_T0048874.1 MGP_C3HHeJ_G0023962.1 mouse_genomes_project 18 30524806 30558767 - MGP_C3HHeJ_P0048874 Gypc protein_coding protein_coding MGP_C3HHeJ_T0048875.1 MGP_C3HHeJ_G0023962.1 mouse_genomes_project 18 30524809 30558713 - MGP_C3HHeJ_P0048875 Gypc protein_coding protein_coding MGP_C3HHeJ_T0048876.1 MGP_C3HHeJ_G0023962.1 mouse_genomes_project 18 30526276 30533185 - MGP_C3HHeJ_P0048876 Gypc protein_coding protein_coding MGP_C3HHeJ_T0048990.1 MGP_C3HHeJ_G0023999.1 mouse_genomes_project 18 33759717 33766417 - MGP_C3HHeJ_P0048990 Spata24 protein_coding protein_coding MGP_C3HHeJ_T0048991.1 MGP_C3HHeJ_G0023999.1 mouse_genomes_project 18 33764247 33766417 - MGP_C3HHeJ_P0048991 Spata24 protein_coding protein_coding MGP_C3HHeJ_T0048994.1 MGP_C3HHeJ_G0024002.1 mouse_genomes_project 18 33823662 33834129 - MGP_C3HHeJ_P0048994 Ecscr protein_coding protein_coding MGP_C3HHeJ_T0048995.1 MGP_C3HHeJ_G0024002.1 mouse_genomes_project 18 33823662 33831735 - MGP_C3HHeJ_P0048995 Ecscr protein_coding protein_coding MGP_C3HHeJ_T0048996.1 MGP_C3HHeJ_G0024002.1 mouse_genomes_project 18 33823849 33827852 - MGP_C3HHeJ_P0048996 Ecscr protein_coding protein_coding MGP_C3HHeJ_T0048997.1 MGP_C3HHeJ_G0024002.1 mouse_genomes_project 18 33824336 33827852 - MGP_C3HHeJ_P0048997 Ecscr protein_coding protein_coding MGP_C3HHeJ_T0048998.1 MGP_C3HHeJ_G0024002.1 mouse_genomes_project 18 33827809 33828449 - Ecscr protein_coding processed_transcript MGP_C3HHeJ_T0048999.1 MGP_C3HHeJ_G0024002.1 mouse_genomes_project 18 33828076 33834066 - Ecscr protein_coding processed_transcript MGP_C3HHeJ_T0003725.1 MGP_C3HHeJ_G0003348.1 mouse_genomes_project 18 9351364 9356259 + Gm15956 antisense antisense MGP_C3HHeJ_T0100379.1 MGP_C3HHeJ_G0038573.1 mouse_genomes_project 18 44378112 44378239 + Gm26262 snoRNA snoRNA MGP_C3HHeJ_T0049194.1 MGP_C3HHeJ_G0024096.1 mouse_genomes_project 18 36539845 36551627 - MGP_C3HHeJ_P0049194 Gnpda1 protein_coding protein_coding MGP_C3HHeJ_T0049195.1 MGP_C3HHeJ_G0024096.1 mouse_genomes_project 18 36540969 36544705 - Gnpda1 protein_coding processed_transcript MGP_C3HHeJ_T0049196.1 MGP_C3HHeJ_G0024096.1 mouse_genomes_project 18 36545731 36547700 - Gnpda1 protein_coding retained_intron MGP_C3HHeJ_T0049197.1 MGP_C3HHeJ_G0024096.1 mouse_genomes_project 18 36545823 36551533 - MGP_C3HHeJ_P0049197 Gnpda1 protein_coding protein_coding MGP_C3HHeJ_T0048686.1 MGP_C3HHeJ_G0023883.1 mouse_genomes_project 18 9128670 9276716 - MGP_C3HHeJ_P0048686 Tmem241 protein_coding protein_coding MGP_C3HHeJ_T0048687.1 MGP_C3HHeJ_G0023883.1 mouse_genomes_project 18 9130897 9276688 - MGP_C3HHeJ_P0048687 Tmem241 protein_coding protein_coding MGP_C3HHeJ_T0048688.1 MGP_C3HHeJ_G0023883.1 mouse_genomes_project 18 9217058 9276716 - MGP_C3HHeJ_P0048688 Tmem241 protein_coding protein_coding MGP_C3HHeJ_T0006922.1 MGP_C3HHeJ_G0005688.1 mouse_genomes_project 18 14382764 14514478 + 1700001G01Rik lincRNA lincRNA MGP_C3HHeJ_T0006923.1 MGP_C3HHeJ_G0005688.1 mouse_genomes_project 18 14382789 14419053 + 1700001G01Rik lincRNA lincRNA MGP_C3HHeJ_T0006924.1 MGP_C3HHeJ_G0005688.1 mouse_genomes_project 18 14399132 14514478 + 1700001G01Rik lincRNA lincRNA MGP_C3HHeJ_T0006925.1 MGP_C3HHeJ_G0005688.1 mouse_genomes_project 18 14502128 14514433 + 1700001G01Rik lincRNA lincRNA MGP_C3HHeJ_T0100385.1 MGP_C3HHeJ_G0038579.1 mouse_genomes_project 18 65888830 65888941 - Gm24679 snoRNA snoRNA MGP_C3HHeJ_T0049466.1 MGP_C3HHeJ_G0024203.1 mouse_genomes_project 18 59882452 59920448 - MGP_C3HHeJ_P0049466 Tcof1 protein_coding protein_coding MGP_C3HHeJ_T0049467.1 MGP_C3HHeJ_G0024203.1 mouse_genomes_project 18 59882452 59920406 - MGP_C3HHeJ_P0049467 Tcof1 protein_coding protein_coding MGP_C3HHeJ_T0049468.1 MGP_C3HHeJ_G0024203.1 mouse_genomes_project 18 59898352 59899313 - Tcof1 protein_coding retained_intron MGP_C3HHeJ_T0049469.1 MGP_C3HHeJ_G0024203.1 mouse_genomes_project 18 59908421 59919923 - MGP_C3HHeJ_P0049469 Tcof1 protein_coding protein_coding MGP_C3HHeJ_T0003742.1 MGP_C3HHeJ_G0003362.1 mouse_genomes_project 18 36001277 36003482 - BC037039 antisense antisense MGP_C3HHeJ_T0013170.1 MGP_C3HHeJ_G0011274.1 mouse_genomes_project 18 6860438 6861257 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049724.1 MGP_C3HHeJ_G0024280.1 mouse_genomes_project 18 70043344 70103514 + MGP_C3HHeJ_P0049724 Mbd2 protein_coding protein_coding MGP_C3HHeJ_T0049725.1 MGP_C3HHeJ_G0024280.1 mouse_genomes_project 18 70043489 70060400 + MGP_C3HHeJ_P0049725 Mbd2 protein_coding protein_coding MGP_C3HHeJ_T0049726.1 MGP_C3HHeJ_G0024280.1 mouse_genomes_project 18 70058280 70100181 + MGP_C3HHeJ_P0049726 Mbd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049727.1 MGP_C3HHeJ_G0024280.1 mouse_genomes_project 18 70070728 70094693 + Mbd2 protein_coding retained_intron MGP_C3HHeJ_T0049728.1 MGP_C3HHeJ_G0024280.1 mouse_genomes_project 18 70095232 70103160 + Mbd2 protein_coding retained_intron MGP_C3HHeJ_T0048987.1 MGP_C3HHeJ_G0023998.1 mouse_genomes_project 18 33753379 33758267 - MGP_C3HHeJ_P0048987 Prob1 protein_coding protein_coding MGP_C3HHeJ_T0048988.1 MGP_C3HHeJ_G0023998.1 mouse_genomes_project 18 33753383 33755035 - Prob1 protein_coding processed_transcript MGP_C3HHeJ_T0048989.1 MGP_C3HHeJ_G0023998.1 mouse_genomes_project 18 33755195 33758216 - MGP_C3HHeJ_P0048989 Prob1 protein_coding protein_coding MGP_C3HHeJ_T0017432.1 MGP_C3HHeJ_G0015134.1 mouse_genomes_project 18 84659295 84661067 - D030046N08Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013165.1 MGP_C3HHeJ_G0011269.1 mouse_genomes_project 18 3237699 3238008 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048647.1 MGP_C3HHeJ_G0023865.1 mouse_genomes_project 18 5126257 5127548 - MGP_C3HHeJ_P0048647 protein_coding protein_coding MGP_C3HHeJ_T0049121.1 MGP_C3HHeJ_G0024068.1 mouse_genomes_project 18 35861329 36038769 + MGP_C3HHeJ_P0049121 Pcdhga3 protein_coding protein_coding MGP_C3HHeJ_T0048519.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61366 130009 - MGP_C3HHeJ_P0048519 Crem protein_coding protein_coding MGP_C3HHeJ_T0048520.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61672 145471 - MGP_C3HHeJ_P0048520 Crem protein_coding protein_coding MGP_C3HHeJ_T0048521.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61674 145381 - MGP_C3HHeJ_P0048521 Crem protein_coding protein_coding MGP_C3HHeJ_T0048522.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61674 145381 - MGP_C3HHeJ_P0048522 Crem protein_coding protein_coding MGP_C3HHeJ_T0048523.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61674 94833 - MGP_C3HHeJ_P0048523 Crem protein_coding protein_coding MGP_C3HHeJ_T0048524.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61674 145280 - MGP_C3HHeJ_P0048524 Crem protein_coding protein_coding MGP_C3HHeJ_T0048525.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 61674 145381 - MGP_C3HHeJ_P0048525 Crem protein_coding protein_coding MGP_C3HHeJ_T0048526.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62275 77077 - MGP_C3HHeJ_P0048526 Crem protein_coding protein_coding MGP_C3HHeJ_T0048527.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62281 145305 - Crem protein_coding processed_transcript MGP_C3HHeJ_T0048528.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62579 145540 - MGP_C3HHeJ_P0048528 Crem protein_coding protein_coding MGP_C3HHeJ_T0048529.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62582 94830 - MGP_C3HHeJ_P0048529 Crem protein_coding protein_coding MGP_C3HHeJ_T0048530.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62708 77055 - MGP_C3HHeJ_P0048530 Crem protein_coding protein_coding MGP_C3HHeJ_T0048531.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62741 129925 - MGP_C3HHeJ_P0048531 Crem protein_coding protein_coding MGP_C3HHeJ_T0048532.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62832 127892 - MGP_C3HHeJ_P0048532 Crem protein_coding protein_coding MGP_C3HHeJ_T0048533.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62852 76439 - MGP_C3HHeJ_P0048533 Crem protein_coding protein_coding MGP_C3HHeJ_T0048534.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62864 76385 - MGP_C3HHeJ_P0048534 Crem protein_coding protein_coding MGP_C3HHeJ_T0048535.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62876 127896 - MGP_C3HHeJ_P0048535 Crem protein_coding protein_coding MGP_C3HHeJ_T0048536.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62890 77077 - MGP_C3HHeJ_P0048536 Crem protein_coding protein_coding MGP_C3HHeJ_T0048537.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62893 127892 - MGP_C3HHeJ_P0048537 Crem protein_coding protein_coding MGP_C3HHeJ_T0048538.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62903 129925 - MGP_C3HHeJ_P0048538 Crem protein_coding protein_coding MGP_C3HHeJ_T0048539.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62903 145325 - MGP_C3HHeJ_P0048539 Crem protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048540.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62903 129925 - MGP_C3HHeJ_P0048540 Crem protein_coding protein_coding MGP_C3HHeJ_T0048541.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62903 129925 - MGP_C3HHeJ_P0048541 Crem protein_coding protein_coding MGP_C3HHeJ_T0048542.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62903 129925 - MGP_C3HHeJ_P0048542 Crem protein_coding protein_coding MGP_C3HHeJ_T0048543.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62906 104962 - MGP_C3HHeJ_P0048543 Crem protein_coding protein_coding MGP_C3HHeJ_T0048544.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62906 104962 - MGP_C3HHeJ_P0048544 Crem protein_coding protein_coding MGP_C3HHeJ_T0048545.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62906 105097 - MGP_C3HHeJ_P0048545 Crem protein_coding protein_coding MGP_C3HHeJ_T0048546.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62906 127892 - MGP_C3HHeJ_P0048546 Crem protein_coding protein_coding MGP_C3HHeJ_T0048547.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 62951 76408 - MGP_C3HHeJ_P0048547 Crem protein_coding protein_coding MGP_C3HHeJ_T0048548.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 63157 127892 - MGP_C3HHeJ_P0048548 Crem protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048549.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 63163 77046 - MGP_C3HHeJ_P0048549 Crem protein_coding protein_coding MGP_C3HHeJ_T0048550.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 63303 94726 - MGP_C3HHeJ_P0048550 Crem protein_coding protein_coding MGP_C3HHeJ_T0048551.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 63303 105139 - MGP_C3HHeJ_P0048551 Crem protein_coding protein_coding MGP_C3HHeJ_T0048552.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 79205 94815 - Crem protein_coding processed_transcript MGP_C3HHeJ_T0048553.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 82939 94830 - Crem protein_coding retained_intron MGP_C3HHeJ_T0048554.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 83362 94828 - Crem protein_coding processed_transcript MGP_C3HHeJ_T0048555.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 89459 145381 - MGP_C3HHeJ_P0048555 Crem protein_coding protein_coding MGP_C3HHeJ_T0048556.1 MGP_C3HHeJ_G0023845.1 mouse_genomes_project 18 89757 145366 - MGP_C3HHeJ_P0048556 Crem protein_coding protein_coding MGP_C3HHeJ_T0006968.1 MGP_C3HHeJ_G0005722.1 mouse_genomes_project 18 83013725 83015058 - 1700095A13Rik lincRNA lincRNA MGP_C3HHeJ_T0000971.1 MGP_C3HHeJ_G0000908.1 mouse_genomes_project 18 33672645 33674806 + TEC TEC MGP_C3HHeJ_T0099130.1 MGP_C3HHeJ_G0037324.1 mouse_genomes_project 18 60569363 60569464 - Gm25834 snRNA snRNA MGP_C3HHeJ_T0000977.1 MGP_C3HHeJ_G0000914.1 mouse_genomes_project 18 54265497 54266486 - TEC TEC MGP_C3HHeJ_T0013183.1 MGP_C3HHeJ_G0011287.1 mouse_genomes_project 18 23158413 23158945 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100370.1 MGP_C3HHeJ_G0038564.1 mouse_genomes_project 18 29398944 29399077 - Gm25396 snoRNA snoRNA MGP_C3HHeJ_T0098086.1 MGP_C3HHeJ_G0036298.1 mouse_genomes_project 18 57161853 57161957 - Gm25660 rRNA rRNA MGP_C3HHeJ_T0048866.1 MGP_C3HHeJ_G0023957.1 mouse_genomes_project 18 30033423 30072964 + MGP_C3HHeJ_P0048866 Iws1 protein_coding protein_coding MGP_C3HHeJ_T0048803.1 MGP_C3HHeJ_G0023928.1 mouse_genomes_project 18 21664461 21671162 - MGP_C3HHeJ_P0048803 Zscan30 protein_coding protein_coding MGP_C3HHeJ_T0049165.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36153912 36157379 + MGP_C3HHeJ_P0049165 Rell2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049166.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36153972 36157379 + MGP_C3HHeJ_P0049166 Rell2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049167.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36154320 36158006 + MGP_C3HHeJ_P0049167 Rell2 protein_coding protein_coding MGP_C3HHeJ_T0049168.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36154421 36156512 + MGP_C3HHeJ_P0049168 Rell2 protein_coding protein_coding MGP_C3HHeJ_T0049169.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36154457 36157997 + MGP_C3HHeJ_P0049169 Rell2 protein_coding protein_coding MGP_C3HHeJ_T0049170.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36155526 36156873 + Rell2 protein_coding retained_intron MGP_C3HHeJ_T0049171.1 MGP_C3HHeJ_G0024089.1 mouse_genomes_project 18 36155567 36157003 + Rell2 protein_coding retained_intron MGP_C3HHeJ_T0049233.1 MGP_C3HHeJ_G0024102.1 mouse_genomes_project 18 38058187 38060773 + MGP_C3HHeJ_P0049233 Pabpc2 protein_coding protein_coding MGP_C3HHeJ_T0049510.1 MGP_C3HHeJ_G0024218.1 mouse_genomes_project 18 60825620 60839488 - MGP_C3HHeJ_P0049510 Grpel2 protein_coding protein_coding MGP_C3HHeJ_T0048733.1 MGP_C3HHeJ_G0023894.1 mouse_genomes_project 18 10908609 11197512 - MGP_C3HHeJ_P0048733 Zfp521 protein_coding protein_coding MGP_C3HHeJ_T0049064.1 MGP_C3HHeJ_G0024026.1 mouse_genomes_project 18 34986735 34992505 + MGP_C3HHeJ_P0049064 Zmat2 protein_coding protein_coding MGP_C3HHeJ_T0011369.1 MGP_C3HHeJ_G0009502.1 mouse_genomes_project 18 66009492 66009811 + Gm22219 misc_RNA misc_RNA MGP_C3HHeJ_T0049562.1 MGP_C3HHeJ_G0024241.1 mouse_genomes_project 18 64523087 64653705 - MGP_C3HHeJ_P0049562 Alpk2 protein_coding protein_coding MGP_C3HHeJ_T0049563.1 MGP_C3HHeJ_G0024241.1 mouse_genomes_project 18 64532259 64606493 - MGP_C3HHeJ_P0049563 Alpk2 protein_coding protein_coding MGP_C3HHeJ_T0049564.1 MGP_C3HHeJ_G0024241.1 mouse_genomes_project 18 64621230 64653706 - Alpk2 protein_coding processed_transcript MGP_C3HHeJ_T0099143.1 MGP_C3HHeJ_G0037337.1 mouse_genomes_project 18 84681507 84681663 - Gm25005 snRNA snRNA MGP_C3HHeJ_T0049005.1 MGP_C3HHeJ_G0024006.1 mouse_genomes_project 18 34101046 34161048 + MGP_C3HHeJ_P0049005 Psd2 protein_coding protein_coding MGP_C3HHeJ_T0049006.1 MGP_C3HHeJ_G0024006.1 mouse_genomes_project 18 34101281 34161048 + MGP_C3HHeJ_P0049006 Psd2 protein_coding protein_coding MGP_C3HHeJ_T0049007.1 MGP_C3HHeJ_G0024006.1 mouse_genomes_project 18 34101283 34161051 + MGP_C3HHeJ_P0049007 Psd2 protein_coding protein_coding MGP_C3HHeJ_T0049008.1 MGP_C3HHeJ_G0024006.1 mouse_genomes_project 18 34101318 34160916 + MGP_C3HHeJ_P0049008 Psd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049009.1 MGP_C3HHeJ_G0024006.1 mouse_genomes_project 18 34101321 34161010 + MGP_C3HHeJ_P0049009 Psd2 protein_coding protein_coding MGP_C3HHeJ_T0049010.1 MGP_C3HHeJ_G0024006.1 mouse_genomes_project 18 34125667 34152355 + Psd2 protein_coding retained_intron MGP_C3HHeJ_T0048759.1 MGP_C3HHeJ_G0023910.1 mouse_genomes_project 18 18016874 18052423 + MGP_C3HHeJ_P0048759 Dsg4 protein_coding protein_coding MGP_C3HHeJ_T0049458.1 MGP_C3HHeJ_G0024200.1 mouse_genomes_project 18 59748143 59775941 - MGP_C3HHeJ_P0049458 Ndst1 protein_coding protein_coding MGP_C3HHeJ_T0006941.1 MGP_C3HHeJ_G0005701.1 mouse_genomes_project 18 36445017 36458308 - 1700086O06Rik lincRNA lincRNA MGP_C3HHeJ_T0006942.1 MGP_C3HHeJ_G0005701.1 mouse_genomes_project 18 36445017 36458675 - 1700086O06Rik lincRNA lincRNA MGP_C3HHeJ_T0006953.1 MGP_C3HHeJ_G0005710.1 mouse_genomes_project 18 60761405 60777239 - Carmn lincRNA lincRNA MGP_C3HHeJ_T0006954.1 MGP_C3HHeJ_G0005710.1 mouse_genomes_project 18 60762754 60777286 - Carmn lincRNA lincRNA MGP_C3HHeJ_T0006931.1 MGP_C3HHeJ_G0005694.1 mouse_genomes_project 18 30665863 30846596 - 4930455D15Rik lincRNA lincRNA MGP_C3HHeJ_T0100395.1 MGP_C3HHeJ_G0038589.1 mouse_genomes_project 18 90625076 90625205 + Gm25418 snoRNA snoRNA MGP_C3HHeJ_T0049550.1 MGP_C3HHeJ_G0024235.1 mouse_genomes_project 18 63459029 63481611 + MGP_C3HHeJ_P0049550 St8sia3 protein_coding protein_coding MGP_C3HHeJ_T0049551.1 MGP_C3HHeJ_G0024235.1 mouse_genomes_project 18 63471409 63475458 + MGP_C3HHeJ_P0049551 St8sia3 protein_coding protein_coding MGP_C3HHeJ_T0049552.1 MGP_C3HHeJ_G0024235.1 mouse_genomes_project 18 63471590 63475315 + St8sia3 protein_coding processed_transcript MGP_C3HHeJ_T0049553.1 MGP_C3HHeJ_G0024235.1 mouse_genomes_project 18 63472221 63475387 + St8sia3 protein_coding retained_intron MGP_C3HHeJ_T0049514.1 MGP_C3HHeJ_G0024220.1 mouse_genomes_project 18 60921188 61036189 - MGP_C3HHeJ_P0049514 Ablim3 protein_coding protein_coding MGP_C3HHeJ_T0049515.1 MGP_C3HHeJ_G0024220.1 mouse_genomes_project 18 60921188 61036217 - MGP_C3HHeJ_P0049515 Ablim3 protein_coding protein_coding MGP_C3HHeJ_T0048771.1 MGP_C3HHeJ_G0023918.1 mouse_genomes_project 18 18624001 18656759 + MGP_C3HHeJ_P0048771 Rnf138 protein_coding protein_coding MGP_C3HHeJ_T0048772.1 MGP_C3HHeJ_G0023918.1 mouse_genomes_project 18 18624001 18656759 + MGP_C3HHeJ_P0048772 Rnf138 protein_coding protein_coding MGP_C3HHeJ_T0003767.1 MGP_C3HHeJ_G0003378.1 mouse_genomes_project 18 80766847 80767967 + Gm27239 antisense antisense MGP_C3HHeJ_T0013167.1 MGP_C3HHeJ_G0011271.1 mouse_genomes_project 18 4840926 4841659 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048619.1 MGP_C3HHeJ_G0023857.1 mouse_genomes_project 18 3193598 3193921 + MGP_C3HHeJ_P0048619 protein_coding protein_coding MGP_C3HHeJ_T0048714.1 MGP_C3HHeJ_G0023890.1 mouse_genomes_project 18 9932935 9946709 + MGP_C3HHeJ_P0048714 Cabyr protein_coding protein_coding MGP_C3HHeJ_T0048715.1 MGP_C3HHeJ_G0023890.1 mouse_genomes_project 18 9932958 9946703 + MGP_C3HHeJ_P0048715 Cabyr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048716.1 MGP_C3HHeJ_G0023890.1 mouse_genomes_project 18 9932960 9946703 + MGP_C3HHeJ_P0048716 Cabyr protein_coding protein_coding MGP_C3HHeJ_T0048717.1 MGP_C3HHeJ_G0023890.1 mouse_genomes_project 18 9932966 9946705 + MGP_C3HHeJ_P0048717 Cabyr protein_coding protein_coding MGP_C3HHeJ_T0048718.1 MGP_C3HHeJ_G0023890.1 mouse_genomes_project 18 9932966 9946705 + MGP_C3HHeJ_P0048718 Cabyr protein_coding protein_coding MGP_C3HHeJ_T0048719.1 MGP_C3HHeJ_G0023890.1 mouse_genomes_project 18 9932966 9946705 + MGP_C3HHeJ_P0048719 Cabyr protein_coding protein_coding MGP_C3HHeJ_T0013207.1 MGP_C3HHeJ_G0011311.1 mouse_genomes_project 18 52684770 52685928 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049315.1 MGP_C3HHeJ_G0024145.1 mouse_genomes_project 18 45181794 45197865 - MGP_C3HHeJ_P0049315 Cdo1 protein_coding protein_coding MGP_C3HHeJ_T0048889.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32235350 32333033 + MGP_C3HHeJ_P0048889 Apc protein_coding protein_coding MGP_C3HHeJ_T0048890.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32235410 32338136 + MGP_C3HHeJ_P0048890 Apc protein_coding protein_coding MGP_C3HHeJ_T0048891.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32235410 32341715 + MGP_C3HHeJ_P0048891 Apc protein_coding protein_coding MGP_C3HHeJ_T0048892.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32235439 32317832 + Apc protein_coding retained_intron MGP_C3HHeJ_T0048893.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32235678 32294126 + MGP_C3HHeJ_P0048893 Apc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048894.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32263948 32279944 + Apc protein_coding retained_intron MGP_C3HHeJ_T0048895.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32263952 32308052 + MGP_C3HHeJ_P0048895 Apc protein_coding protein_coding MGP_C3HHeJ_T0048896.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32317595 32333853 + MGP_C3HHeJ_P0048896 Apc protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048897.1 MGP_C3HHeJ_G0023970.1 mouse_genomes_project 18 32318890 32330264 + Apc protein_coding processed_transcript MGP_C3HHeJ_T0048839.1 MGP_C3HHeJ_G0023942.1 mouse_genomes_project 18 23247798 23537362 - MGP_C3HHeJ_P0048839 Celf4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048840.1 MGP_C3HHeJ_G0023942.1 mouse_genomes_project 18 23247798 23310597 - MGP_C3HHeJ_P0048840 Celf4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048841.1 MGP_C3HHeJ_G0023942.1 mouse_genomes_project 18 23247811 23537822 - MGP_C3HHeJ_P0048841 Celf4 protein_coding protein_coding MGP_C3HHeJ_T0048842.1 MGP_C3HHeJ_G0023942.1 mouse_genomes_project 18 23247811 23537822 - MGP_C3HHeJ_P0048842 Celf4 protein_coding protein_coding MGP_C3HHeJ_T0048720.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 9946876 10140891 - MGP_C3HHeJ_P0048720 Osbpl1a protein_coding protein_coding MGP_C3HHeJ_T0048721.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 9947767 10092145 - MGP_C3HHeJ_P0048721 Osbpl1a protein_coding protein_coding MGP_C3HHeJ_T0048722.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 9954745 9959326 - Osbpl1a protein_coding retained_intron MGP_C3HHeJ_T0048723.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 9958991 10056162 - MGP_C3HHeJ_P0048723 Osbpl1a protein_coding protein_coding MGP_C3HHeJ_T0048724.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 9960654 10082593 - Osbpl1a protein_coding retained_intron MGP_C3HHeJ_T0048725.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 9963487 10062787 - MGP_C3HHeJ_P0048725 Osbpl1a protein_coding protein_coding MGP_C3HHeJ_T0048726.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 10063897 10140891 - Osbpl1a protein_coding retained_intron MGP_C3HHeJ_T0048727.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 10092030 10140827 - MGP_C3HHeJ_P0048727 Osbpl1a protein_coding protein_coding MGP_C3HHeJ_T0048728.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 10101547 10140856 - MGP_C3HHeJ_P0048728 Osbpl1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048729.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 10122360 10140842 - Osbpl1a protein_coding retained_intron MGP_C3HHeJ_T0048730.1 MGP_C3HHeJ_G0023891.1 mouse_genomes_project 18 10127923 10140839 - Osbpl1a protein_coding processed_transcript MGP_C3HHeJ_T0048811.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 21923485 22007308 + MGP_C3HHeJ_P0048811 Galnt1 protein_coding protein_coding MGP_C3HHeJ_T0048812.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 21923908 22007300 + MGP_C3HHeJ_P0048812 Galnt1 protein_coding protein_coding MGP_C3HHeJ_T0048813.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 21924100 21975164 + MGP_C3HHeJ_P0048813 Galnt1 protein_coding protein_coding MGP_C3HHeJ_T0048814.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 21951517 22007300 + MGP_C3HHeJ_P0048814 Galnt1 protein_coding protein_coding MGP_C3HHeJ_T0048815.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 21957234 21988020 + MGP_C3HHeJ_P0048815 Galnt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048816.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 21964437 21992197 + MGP_C3HHeJ_P0048816 Galnt1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048817.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 22000506 22003362 + Galnt1 protein_coding processed_transcript MGP_C3HHeJ_T0048818.1 MGP_C3HHeJ_G0023932.1 mouse_genomes_project 18 22000544 22003682 + Galnt1 protein_coding processed_transcript MGP_C3HHeJ_T0006928.1 MGP_C3HHeJ_G0005691.1 mouse_genomes_project 18 29827293 29829761 - Gm26823 lincRNA lincRNA MGP_C3HHeJ_T0049820.1 MGP_C3HHeJ_G0024310.1 mouse_genomes_project 18 76932464 77101770 + MGP_C3HHeJ_P0049820 Loxhd1 protein_coding protein_coding MGP_C3HHeJ_T0049821.1 MGP_C3HHeJ_G0024310.1 mouse_genomes_project 18 76958705 77037601 + MGP_C3HHeJ_P0049821 Loxhd1 protein_coding protein_coding MGP_C3HHeJ_T0049822.1 MGP_C3HHeJ_G0024310.1 mouse_genomes_project 18 76985377 77067952 + MGP_C3HHeJ_P0049822 Loxhd1 protein_coding protein_coding MGP_C3HHeJ_T0049823.1 MGP_C3HHeJ_G0024310.1 mouse_genomes_project 18 77030405 77101854 + MGP_C3HHeJ_P0049823 Loxhd1 protein_coding protein_coding MGP_C3HHeJ_T0049824.1 MGP_C3HHeJ_G0024310.1 mouse_genomes_project 18 77065988 77101399 + MGP_C3HHeJ_P0049824 Loxhd1 protein_coding protein_coding MGP_C3HHeJ_T0049435.1 MGP_C3HHeJ_G0024193.1 mouse_genomes_project 18 59342043 59353430 + MGP_C3HHeJ_P0049435 F830016B08Rik protein_coding protein_coding MGP_C3HHeJ_T0049770.1 MGP_C3HHeJ_G0024294.1 mouse_genomes_project 18 74372476 74405941 + MGP_C3HHeJ_P0049770 Acaa2 protein_coding protein_coding MGP_C3HHeJ_T0011366.1 MGP_C3HHeJ_G0009499.1 mouse_genomes_project 18 54789603 54789909 - Gm22484 misc_RNA misc_RNA MGP_C3HHeJ_T0049866.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80018212 80060627 + MGP_C3HHeJ_P0049866 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049867.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80018262 80051375 + MGP_C3HHeJ_P0049867 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049868.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80020165 80060715 + MGP_C3HHeJ_P0049868 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049869.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80020756 80052061 + MGP_C3HHeJ_P0049869 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049870.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80021204 80060706 + MGP_C3HHeJ_P0049870 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049871.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80021208 80043144 + Pqlc1 protein_coding retained_intron MGP_C3HHeJ_T0049872.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80021226 80060714 + MGP_C3HHeJ_P0049872 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049873.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80021227 80041324 + Pqlc1 protein_coding retained_intron MGP_C3HHeJ_T0049874.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80021227 80060704 + MGP_C3HHeJ_P0049874 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049875.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80021238 80060702 + MGP_C3HHeJ_P0049875 Pqlc1 protein_coding protein_coding MGP_C3HHeJ_T0049876.1 MGP_C3HHeJ_G0024328.1 mouse_genomes_project 18 80028861 80029507 + Pqlc1 protein_coding processed_transcript MGP_C3HHeJ_T0049122.1 MGP_C3HHeJ_G0024069.1 mouse_genomes_project 18 35867273 35874611 + protein_coding processed_transcript MGP_C3HHeJ_T0049234.1 MGP_C3HHeJ_G0024103.1 mouse_genomes_project 18 38502005 38517634 - MGP_C3HHeJ_P0049234 Yipf5 protein_coding protein_coding MGP_C3HHeJ_T0049073.1 MGP_C3HHeJ_G0024031.1 mouse_genomes_project 18 35147225 36037094 + MGP_C3HHeJ_P0049073 Gm42416 protein_coding protein_coding MGP_C3HHeJ_T0006920.1 MGP_C3HHeJ_G0005686.1 mouse_genomes_project 18 8960577 8979219 - Gm6277 lincRNA lincRNA MGP_C3HHeJ_T0048732.1 MGP_C3HHeJ_G0023893.1 mouse_genomes_project 18 10208323 10226413 + MGP_C3HHeJ_P0048732 Hrh4 protein_coding protein_coding MGP_C3HHeJ_T0049079.1 MGP_C3HHeJ_G0024035.1 mouse_genomes_project 18 35173336 36030210 + MGP_C3HHeJ_P0049079 Gm37388 protein_coding protein_coding MGP_C3HHeJ_T0049774.1 MGP_C3HHeJ_G0024298.1 mouse_genomes_project 18 74636416 74916006 + MGP_C3HHeJ_P0049774 Dym protein_coding protein_coding MGP_C3HHeJ_T0049495.1 MGP_C3HHeJ_G0024214.1 mouse_genomes_project 18 60598296 60645088 - MGP_C3HHeJ_P0049495 Arhgef37 protein_coding protein_coding MGP_C3HHeJ_T0003734.1 MGP_C3HHeJ_G0003354.1 mouse_genomes_project 18 35128434 35129634 - Gm37751 antisense antisense MGP_C3HHeJ_T0003722.1 MGP_C3HHeJ_G0003346.1 mouse_genomes_project 18 3364132 3374646 + Gm28529 antisense antisense MGP_C3HHeJ_T0003723.1 MGP_C3HHeJ_G0003346.1 mouse_genomes_project 18 3364144 3365114 + Gm28529 antisense antisense MGP_C3HHeJ_T0013213.1 MGP_C3HHeJ_G0011317.1 mouse_genomes_project 18 68691804 68692639 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048739.1 MGP_C3HHeJ_G0023898.1 mouse_genomes_project 18 12057322 12180039 + MGP_C3HHeJ_P0048739 Taf4b protein_coding protein_coding MGP_C3HHeJ_T0048740.1 MGP_C3HHeJ_G0023898.1 mouse_genomes_project 18 12057744 12177808 + MGP_C3HHeJ_P0048740 Taf4b protein_coding unknown_likely_coding MGP_C3HHeJ_T0049721.1 MGP_C3HHeJ_G0024279.1 mouse_genomes_project 18 69984322 70003556 - MGP_C3HHeJ_P0049721 Poli protein_coding protein_coding MGP_C3HHeJ_T0049722.1 MGP_C3HHeJ_G0024279.1 mouse_genomes_project 18 69984325 70003390 - MGP_C3HHeJ_P0049722 Poli protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049723.1 MGP_C3HHeJ_G0024279.1 mouse_genomes_project 18 69984552 70003409 - MGP_C3HHeJ_P0049723 Poli protein_coding protein_coding MGP_C3HHeJ_T0049284.1 MGP_C3HHeJ_G0024133.1 mouse_genomes_project 18 42734092 42761209 + MGP_C3HHeJ_P0049284 Myot protein_coding protein_coding MGP_C3HHeJ_T0049285.1 MGP_C3HHeJ_G0024133.1 mouse_genomes_project 18 42734092 42761209 + MGP_C3HHeJ_P0049285 Myot protein_coding protein_coding MGP_C3HHeJ_T0098080.1 MGP_C3HHeJ_G0036292.1 mouse_genomes_project 18 9759945 9760059 - Gm22340 rRNA rRNA MGP_C3HHeJ_T0048909.1 MGP_C3HHeJ_G0023976.1 mouse_genomes_project 18 32591563 32610273 - MGP_C3HHeJ_P0048909 Nme5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048910.1 MGP_C3HHeJ_G0023976.1 mouse_genomes_project 18 32591565 32610288 - MGP_C3HHeJ_P0048910 Nme5 protein_coding protein_coding MGP_C3HHeJ_T0048911.1 MGP_C3HHeJ_G0023976.1 mouse_genomes_project 18 32591613 32610260 - MGP_C3HHeJ_P0048911 Nme5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048912.1 MGP_C3HHeJ_G0023976.1 mouse_genomes_project 18 32598450 32610256 - MGP_C3HHeJ_P0048912 Nme5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049112.1 MGP_C3HHeJ_G0024061.1 mouse_genomes_project 18 35698296 35703160 + MGP_C3HHeJ_P0049112 Pcdhb20 protein_coding protein_coding MGP_C3HHeJ_T0049610.1 MGP_C3HHeJ_G0024252.1 mouse_genomes_project 18 66212535 66215297 - MGP_C3HHeJ_P0049610 Mc4r protein_coding protein_coding MGP_C3HHeJ_T0048952.1 MGP_C3HHeJ_G0023992.1 mouse_genomes_project 18 33631093 33631462 + MGP_C3HHeJ_P0048952 Gm5239 protein_coding protein_coding MGP_C3HHeJ_T0000979.1 MGP_C3HHeJ_G0000916.1 mouse_genomes_project 18 64877860 64879121 + TEC TEC MGP_C3HHeJ_T0099111.1 MGP_C3HHeJ_G0037305.1 mouse_genomes_project 18 9322034 9322153 + Gm25289 snRNA snRNA MGP_C3HHeJ_T0049623.1 MGP_C3HHeJ_G0024261.1 mouse_genomes_project 18 66955238 66958107 + MGP_C3HHeJ_P0049623 Gm17669 protein_coding protein_coding MGP_C3HHeJ_T0049125.1 MGP_C3HHeJ_G0024071.1 mouse_genomes_project 18 35878190 36038769 + MGP_C3HHeJ_P0049125 Pcdhgb2 protein_coding protein_coding MGP_C3HHeJ_T0099137.1 MGP_C3HHeJ_G0037331.1 mouse_genomes_project 18 66546990 66547083 - Gm23512 snRNA snRNA MGP_C3HHeJ_T0049877.1 MGP_C3HHeJ_G0024329.1 mouse_genomes_project 18 80062535 80137351 - MGP_C3HHeJ_P0049877 Kcng2 protein_coding protein_coding MGP_C3HHeJ_T0049878.1 MGP_C3HHeJ_G0024329.1 mouse_genomes_project 18 80092860 80136433 - MGP_C3HHeJ_P0049878 Kcng2 protein_coding protein_coding MGP_C3HHeJ_T0049879.1 MGP_C3HHeJ_G0024329.1 mouse_genomes_project 18 80093125 80136747 - MGP_C3HHeJ_P0049879 Kcng2 protein_coding protein_coding MGP_C3HHeJ_T0010195.1 MGP_C3HHeJ_G0008328.1 mouse_genomes_project 18 89833975 89834045 + Gm22694 miRNA miRNA MGP_C3HHeJ_T0049790.1 MGP_C3HHeJ_G0024303.1 mouse_genomes_project 18 76495803 76539866 + MGP_C3HHeJ_P0049790 Skor2 protein_coding protein_coding MGP_C3HHeJ_T0049266.1 MGP_C3HHeJ_G0024120.1 mouse_genomes_project 18 41935928 42099013 - MGP_C3HHeJ_P0049266 Jakmip2 protein_coding protein_coding MGP_C3HHeJ_T0049404.1 MGP_C3HHeJ_G0024177.1 mouse_genomes_project 18 55574606 55623573 + MGP_C3HHeJ_P0049404 Lmnb1 protein_coding protein_coding MGP_C3HHeJ_T0049405.1 MGP_C3HHeJ_G0024177.1 mouse_genomes_project 18 55595839 55600837 + Lmnb1 protein_coding retained_intron MGP_C3HHeJ_T0049931.1 MGP_C3HHeJ_G0024344.1 mouse_genomes_project 18 84798442 84830493 + MGP_C3HHeJ_P0049931 Cyb5a protein_coding protein_coding MGP_C3HHeJ_T0049932.1 MGP_C3HHeJ_G0024344.1 mouse_genomes_project 18 84798481 84829684 + MGP_C3HHeJ_P0049932 Cyb5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049933.1 MGP_C3HHeJ_G0024344.1 mouse_genomes_project 18 84798511 84823674 + Cyb5a protein_coding retained_intron MGP_C3HHeJ_T0049934.1 MGP_C3HHeJ_G0024344.1 mouse_genomes_project 18 84798983 84829954 + MGP_C3HHeJ_P0049934 Cyb5a protein_coding protein_coding MGP_C3HHeJ_T0049935.1 MGP_C3HHeJ_G0024344.1 mouse_genomes_project 18 84827692 84829956 + Cyb5a protein_coding retained_intron MGP_C3HHeJ_T0048770.1 MGP_C3HHeJ_G0023917.1 mouse_genomes_project 18 18577921 18602802 + MGP_C3HHeJ_P0048770 protein_coding protein_coding MGP_C3HHeJ_T0006959.1 MGP_C3HHeJ_G0005714.1 mouse_genomes_project 18 67182832 67183978 - Gm26910 lincRNA lincRNA MGP_C3HHeJ_T0049056.1 MGP_C3HHeJ_G0024024.1 mouse_genomes_project 18 34959537 34976001 - MGP_C3HHeJ_P0049056 Hars protein_coding protein_coding MGP_C3HHeJ_T0049415.1 MGP_C3HHeJ_G0024182.1 mouse_genomes_project 18 56353203 56362998 + MGP_C3HHeJ_P0049415 Ctxn3 protein_coding protein_coding MGP_C3HHeJ_T0049883.1 MGP_C3HHeJ_G0024331.1 mouse_genomes_project 18 80377859 80482406 - MGP_C3HHeJ_P0049883 Nfatc1 protein_coding protein_coding MGP_C3HHeJ_T0049884.1 MGP_C3HHeJ_G0024331.1 mouse_genomes_project 18 80377859 80487309 - MGP_C3HHeJ_P0049884 Nfatc1 protein_coding protein_coding MGP_C3HHeJ_T0049885.1 MGP_C3HHeJ_G0024331.1 mouse_genomes_project 18 80377859 80487309 - MGP_C3HHeJ_P0049885 Nfatc1 protein_coding protein_coding MGP_C3HHeJ_T0049886.1 MGP_C3HHeJ_G0024331.1 mouse_genomes_project 18 80420308 80482406 - MGP_C3HHeJ_P0049886 Nfatc1 protein_coding protein_coding MGP_C3HHeJ_T0049070.1 MGP_C3HHeJ_G0024030.1 mouse_genomes_project 18 35147132 35358175 + MGP_C3HHeJ_P0049070 Pcdha4 protein_coding protein_coding MGP_C3HHeJ_T0049071.1 MGP_C3HHeJ_G0024030.1 mouse_genomes_project 18 35147142 35150036 + Pcdha4 protein_coding retained_intron MGP_C3HHeJ_T0049072.1 MGP_C3HHeJ_G0024030.1 mouse_genomes_project 18 35147159 35358179 + MGP_C3HHeJ_P0049072 Pcdha4 protein_coding protein_coding MGP_C3HHeJ_T0010153.1 MGP_C3HHeJ_G0008286.1 mouse_genomes_project 18 7770847 7770969 + Mir1b miRNA miRNA MGP_C3HHeJ_T0013220.1 MGP_C3HHeJ_G0011324.1 mouse_genomes_project 18 90047907 90048867 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011358.1 MGP_C3HHeJ_G0009491.1 mouse_genomes_project 18 34994712 34994855 + Vaultrc5 misc_RNA misc_RNA MGP_C3HHeJ_T0048675.1 MGP_C3HHeJ_G0023878.1 mouse_genomes_project 18 7628638 7642725 - MGP_C3HHeJ_P0048675 Abhd3 protein_coding protein_coding MGP_C3HHeJ_T0048676.1 MGP_C3HHeJ_G0023878.1 mouse_genomes_project 18 7629282 7688075 - MGP_C3HHeJ_P0048676 Abhd3 protein_coding protein_coding MGP_C3HHeJ_T0013188.1 MGP_C3HHeJ_G0011292.1 mouse_genomes_project 18 33892152 33892503 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049506.1 MGP_C3HHeJ_G0024216.1 mouse_genomes_project 18 60799728 60804256 + MGP_C3HHeJ_P0049506 Il17b protein_coding protein_coding MGP_C3HHeJ_T0048853.1 MGP_C3HHeJ_G0023947.1 mouse_genomes_project 18 29555433 29556673 + MGP_C3HHeJ_P0048853 B930094E09Rik protein_coding protein_coding MGP_C3HHeJ_T0049359.1 MGP_C3HHeJ_G0024156.1 mouse_genomes_project 18 49180894 49181938 - MGP_C3HHeJ_P0049359 Hdhd1a protein_coding protein_coding MGP_C3HHeJ_T0100377.1 MGP_C3HHeJ_G0038571.1 mouse_genomes_project 18 33653353 33653549 + Snora74a snoRNA snoRNA MGP_C3HHeJ_T0049409.1 MGP_C3HHeJ_G0024179.1 mouse_genomes_project 18 55833825 55853331 - MGP_C3HHeJ_P0049409 C330018D20Rik protein_coding protein_coding MGP_C3HHeJ_T0049410.1 MGP_C3HHeJ_G0024179.1 mouse_genomes_project 18 55835601 55853317 - MGP_C3HHeJ_P0049410 C330018D20Rik protein_coding protein_coding MGP_C3HHeJ_T0049411.1 MGP_C3HHeJ_G0024179.1 mouse_genomes_project 18 55846488 55853209 - C330018D20Rik protein_coding processed_transcript MGP_C3HHeJ_T0049271.1 MGP_C3HHeJ_G0024123.1 mouse_genomes_project 18 42187157 42203643 - MGP_C3HHeJ_P0049271 Gm94 protein_coding protein_coding MGP_C3HHeJ_T0048573.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1766136 1970977 + MGP_C3HHeJ_P0048573 Svil protein_coding protein_coding MGP_C3HHeJ_T0048574.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1766163 1906266 + Svil protein_coding retained_intron MGP_C3HHeJ_T0048575.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1766301 1906182 + Svil protein_coding retained_intron MGP_C3HHeJ_T0048576.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1841631 1894747 + MGP_C3HHeJ_P0048576 Svil protein_coding protein_coding MGP_C3HHeJ_T0048577.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1842436 1970298 + MGP_C3HHeJ_P0048577 Svil protein_coding protein_coding MGP_C3HHeJ_T0048578.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1842754 1850838 + Svil protein_coding processed_transcript MGP_C3HHeJ_T0048579.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1883281 1970120 + MGP_C3HHeJ_P0048579 Svil protein_coding protein_coding MGP_C3HHeJ_T0048580.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1888111 1970128 + MGP_C3HHeJ_P0048580 Svil protein_coding protein_coding MGP_C3HHeJ_T0048581.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1888113 1969852 + MGP_C3HHeJ_P0048581 Svil protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048582.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1894444 1970974 + MGP_C3HHeJ_P0048582 Svil protein_coding protein_coding MGP_C3HHeJ_T0048583.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1912263 1970977 + MGP_C3HHeJ_P0048583 Svil protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048584.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1941693 1942829 + Svil protein_coding retained_intron MGP_C3HHeJ_T0048585.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1952797 1968709 + MGP_C3HHeJ_P0048585 Svil protein_coding protein_coding MGP_C3HHeJ_T0048586.1 MGP_C3HHeJ_G0023852.1 mouse_genomes_project 18 1965943 1970904 + Svil protein_coding retained_intron MGP_C3HHeJ_T0049305.1 MGP_C3HHeJ_G0024139.1 mouse_genomes_project 18 44684337 44728787 - MGP_C3HHeJ_P0049305 Pggt1b protein_coding protein_coding MGP_C3HHeJ_T0003768.1 MGP_C3HHeJ_G0003379.1 mouse_genomes_project 18 84805968 84806913 - Gm16146 antisense antisense MGP_C3HHeJ_T0099141.1 MGP_C3HHeJ_G0037335.1 mouse_genomes_project 18 82203495 82203625 - Gm25060 snRNA snRNA MGP_C3HHeJ_T0049248.1 MGP_C3HHeJ_G0024113.1 mouse_genomes_project 18 40754141 40756851 + MGP_C3HHeJ_P0049248 Pou4f3 protein_coding protein_coding MGP_C3HHeJ_T0048852.1 MGP_C3HHeJ_G0023946.1 mouse_genomes_project 18 29526190 29555824 - MGP_C3HHeJ_P0048852 Slc25a46 protein_coding protein_coding MGP_C3HHeJ_T0048908.1 MGP_C3HHeJ_G0023975.1 mouse_genomes_project 18 32568553 32574506 + MGP_C3HHeJ_P0048908 Wnt8a protein_coding protein_coding MGP_C3HHeJ_T0049558.1 MGP_C3HHeJ_G0024239.1 mouse_genomes_project 18 63751018 63887700 - MGP_C3HHeJ_P0049558 Atp8b1 protein_coding protein_coding MGP_C3HHeJ_T0010150.1 MGP_C3HHeJ_G0008283.1 mouse_genomes_project 18 6763282 6763372 - Gm23637 miRNA miRNA MGP_C3HHeJ_T0049709.1 MGP_C3HHeJ_G0024275.1 mouse_genomes_project 18 69440696 69606066 - MGP_C3HHeJ_P0049709 Rab27b protein_coding protein_coding MGP_C3HHeJ_T0049710.1 MGP_C3HHeJ_G0024275.1 mouse_genomes_project 18 69445217 69514942 - MGP_C3HHeJ_P0049710 Rab27b protein_coding protein_coding MGP_C3HHeJ_T0049711.1 MGP_C3HHeJ_G0024275.1 mouse_genomes_project 18 69445217 69514942 - MGP_C3HHeJ_P0049711 Rab27b protein_coding protein_coding MGP_C3HHeJ_T0049712.1 MGP_C3HHeJ_G0024275.1 mouse_genomes_project 18 69602624 69606035 - Rab27b protein_coding retained_intron MGP_C3HHeJ_T0099122.1 MGP_C3HHeJ_G0037316.1 mouse_genomes_project 18 45378129 45378227 + Gm23610 snRNA snRNA MGP_C3HHeJ_T0048624.1 MGP_C3HHeJ_G0023859.1 mouse_genomes_project 18 3485566 3526545 + MGP_C3HHeJ_P0048624 4921524L21Rik protein_coding protein_coding MGP_C3HHeJ_T0048744.1 MGP_C3HHeJ_G0023901.1 mouse_genomes_project 18 12764516 13045700 - MGP_C3HHeJ_P0048744 Chst9 protein_coding protein_coding MGP_C3HHeJ_T0048745.1 MGP_C3HHeJ_G0023901.1 mouse_genomes_project 18 12764516 13081431 - MGP_C3HHeJ_P0048745 Chst9 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048662.1 MGP_C3HHeJ_G0023874.1 mouse_genomes_project 18 7011878 7132088 - MGP_C3HHeJ_P0048662 Rock1 protein_coding protein_coding MGP_C3HHeJ_T0049438.1 MGP_C3HHeJ_G0024196.1 mouse_genomes_project 18 59583329 59615202 + MGP_C3HHeJ_P0049438 Dctn4 protein_coding protein_coding MGP_C3HHeJ_T0049439.1 MGP_C3HHeJ_G0024196.1 mouse_genomes_project 18 59583339 59615205 + MGP_C3HHeJ_P0049439 Dctn4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003727.1 MGP_C3HHeJ_G0003350.1 mouse_genomes_project 18 14110861 14111807 + Gm15485 antisense antisense MGP_C3HHeJ_T0048805.1 MGP_C3HHeJ_G0023930.1 mouse_genomes_project 18 21716171 21727290 - MGP_C3HHeJ_P0048805 Zfp24 protein_coding protein_coding MGP_C3HHeJ_T0048806.1 MGP_C3HHeJ_G0023930.1 mouse_genomes_project 18 21720396 21726800 - MGP_C3HHeJ_P0048806 Zfp24 protein_coding protein_coding MGP_C3HHeJ_T0048807.1 MGP_C3HHeJ_G0023930.1 mouse_genomes_project 18 21724447 21726850 - MGP_C3HHeJ_P0048807 Zfp24 protein_coding protein_coding MGP_C3HHeJ_T0048757.1 MGP_C3HHeJ_G0023908.1 mouse_genomes_project 18 17732021 17780017 + MGP_C3HHeJ_P0048757 Dsg1c protein_coding protein_coding MGP_C3HHeJ_T0049089.1 MGP_C3HHeJ_G0024041.1 mouse_genomes_project 18 35266167 35358175 + MGP_C3HHeJ_P0049089 Pcdhac1 protein_coding protein_coding MGP_C3HHeJ_T0049103.1 MGP_C3HHeJ_G0024052.1 mouse_genomes_project 18 35605021 35607872 + MGP_C3HHeJ_P0049103 Pcdhb10 protein_coding protein_coding MGP_C3HHeJ_T0097881.1 MGP_C3HHeJ_G0036093.1 mouse_genomes_project 18 73872435 73873000 - pseudogene pseudogene MGP_C3HHeJ_T0048711.1 MGP_C3HHeJ_G0023889.1 mouse_genomes_project 18 9826224 9877876 + Ttc39c protein_coding retained_intron MGP_C3HHeJ_T0048712.1 MGP_C3HHeJ_G0023889.1 mouse_genomes_project 18 9826766 9928375 + MGP_C3HHeJ_P0048712 Ttc39c protein_coding protein_coding MGP_C3HHeJ_T0048713.1 MGP_C3HHeJ_G0023889.1 mouse_genomes_project 18 9926316 9928442 + Ttc39c protein_coding retained_intron MGP_C3HHeJ_T0049433.1 MGP_C3HHeJ_G0024191.1 mouse_genomes_project 18 59231444 59264686 + MGP_C3HHeJ_P0049433 Gm4951 protein_coding protein_coding MGP_C3HHeJ_T0049507.1 MGP_C3HHeJ_G0024217.1 mouse_genomes_project 18 60808549 60820816 - MGP_C3HHeJ_P0049507 Pcyox1l protein_coding protein_coding MGP_C3HHeJ_T0049508.1 MGP_C3HHeJ_G0024217.1 mouse_genomes_project 18 60811187 60820794 - MGP_C3HHeJ_P0049508 Pcyox1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049509.1 MGP_C3HHeJ_G0024217.1 mouse_genomes_project 18 60814784 60820816 - Pcyox1l protein_coding retained_intron MGP_C3HHeJ_T0049279.1 MGP_C3HHeJ_G0024129.1 mouse_genomes_project 18 42571525 42578880 - MGP_C3HHeJ_P0049279 Spinkl protein_coding protein_coding MGP_C3HHeJ_T0049238.1 MGP_C3HHeJ_G0024107.1 mouse_genomes_project 18 40315236 40328128 - MGP_C3HHeJ_P0049238 Grxcr2 protein_coding protein_coding MGP_C3HHeJ_T0049205.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37098698 37180731 - MGP_C3HHeJ_P0049205 Fgf1 protein_coding protein_coding MGP_C3HHeJ_T0049206.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37098700 37191308 - MGP_C3HHeJ_P0049206 Fgf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049207.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37100202 37128447 - MGP_C3HHeJ_P0049207 Fgf1 protein_coding protein_coding MGP_C3HHeJ_T0049208.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37101933 37120449 - MGP_C3HHeJ_P0049208 Fgf1 protein_coding protein_coding MGP_C3HHeJ_T0049209.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37107821 37127832 - MGP_C3HHeJ_P0049209 Fgf1 protein_coding protein_coding MGP_C3HHeJ_T0049210.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37107862 37120562 - Fgf1 protein_coding retained_intron MGP_C3HHeJ_T0049211.1 MGP_C3HHeJ_G0024100.1 mouse_genomes_project 18 37120268 37191059 - MGP_C3HHeJ_P0049211 Fgf1 protein_coding protein_coding MGP_C3HHeJ_T0049436.1 MGP_C3HHeJ_G0024194.1 mouse_genomes_project 18 59426058 59428894 + MGP_C3HHeJ_P0049436 Iigp1 protein_coding protein_coding MGP_C3HHeJ_T0010156.1 MGP_C3HHeJ_G0008289.1 mouse_genomes_project 18 9903393 9903478 + Mir1948 miRNA miRNA MGP_C3HHeJ_T0049554.1 MGP_C3HHeJ_G0024236.1 mouse_genomes_project 18 63555392 63616303 + MGP_C3HHeJ_P0049554 Onecut2 protein_coding protein_coding MGP_C3HHeJ_T0049555.1 MGP_C3HHeJ_G0024236.1 mouse_genomes_project 18 63555392 63616305 + MGP_C3HHeJ_P0049555 Onecut2 protein_coding protein_coding MGP_C3HHeJ_T0048564.1 MGP_C3HHeJ_G0023848.1 mouse_genomes_project 18 1001780 1018288 + MGP_C3HHeJ_P0048564 Lyzl1 protein_coding protein_coding MGP_C3HHeJ_T0048565.1 MGP_C3HHeJ_G0023848.1 mouse_genomes_project 18 1001810 1018288 + MGP_C3HHeJ_P0048565 Lyzl1 protein_coding protein_coding MGP_C3HHeJ_T0049772.1 MGP_C3HHeJ_G0024296.1 mouse_genomes_project 18 74617459 74620365 + MGP_C3HHeJ_P0049772 Rpl17 protein_coding protein_coding MGP_C3HHeJ_T0049832.1 MGP_C3HHeJ_G0024312.1 mouse_genomes_project 18 77299805 77393042 - MGP_C3HHeJ_P0049832 8030462N17Rik protein_coding protein_coding MGP_C3HHeJ_T0100373.1 MGP_C3HHeJ_G0038567.1 mouse_genomes_project 18 32099391 32099517 + Gm24432 snoRNA snoRNA MGP_C3HHeJ_T0049049.1 MGP_C3HHeJ_G0024020.1 mouse_genomes_project 18 34935377 34937573 - MGP_C3HHeJ_P0049049 Ndufa2 protein_coding protein_coding MGP_C3HHeJ_T0048907.1 MGP_C3HHeJ_G0023974.1 mouse_genomes_project 18 32466027 32534233 - MGP_C3HHeJ_P0048907 Fam13b protein_coding protein_coding MGP_C3HHeJ_T0049200.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 36841695 36888173 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049201.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 36841759 37045582 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049202.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 36868927 36885184 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049203.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 36922482 37032443 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049204.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 36922482 37379882 + MGP_C3HHeJ_P0049204 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049212.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37154068 37236772 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049213.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37154327 37195926 + MGP_C3HHeJ_P0049213 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049214.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37221210 37236435 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049215.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37258721 37369521 + Arhgap26 protein_coding retained_intron MGP_C3HHeJ_T0049216.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37258721 37654046 + MGP_C3HHeJ_P0049216 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049217.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37259052 37648972 + MGP_C3HHeJ_P0049217 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049218.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37368682 37397117 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049219.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37498423 37650312 + MGP_C3HHeJ_P0049219 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049220.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37559819 37654046 + MGP_C3HHeJ_P0049220 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049221.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37564683 37580617 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049222.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37570025 37637831 + MGP_C3HHeJ_P0049222 Arhgap26 protein_coding protein_coding MGP_C3HHeJ_T0049223.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37570025 37648939 + MGP_C3HHeJ_P0049223 Arhgap26 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049224.1 MGP_C3HHeJ_G0024099.1 mouse_genomes_project 18 37640381 37644865 + Arhgap26 protein_coding processed_transcript MGP_C3HHeJ_T0049518.1 MGP_C3HHeJ_G0024223.1 mouse_genomes_project 18 61315475 61319755 + MGP_C3HHeJ_P0049518 Gm9949 protein_coding protein_coding MGP_C3HHeJ_T0011354.1 MGP_C3HHeJ_G0009487.1 mouse_genomes_project 18 18931857 18931967 + Gm24372 misc_RNA misc_RNA MGP_C3HHeJ_T0099145.1 MGP_C3HHeJ_G0037339.1 mouse_genomes_project 18 90347307 90347371 + Gm23859 snRNA snRNA MGP_C3HHeJ_T0049432.1 MGP_C3HHeJ_G0024190.1 mouse_genomes_project 18 58136487 58387493 + MGP_C3HHeJ_P0049432 Chsy3 protein_coding protein_coding MGP_C3HHeJ_T0048993.1 MGP_C3HHeJ_G0024001.1 mouse_genomes_project 18 33812692 33843440 + 1700066B19Rik protein_coding processed_transcript MGP_C3HHeJ_T0049000.1 MGP_C3HHeJ_G0024001.1 mouse_genomes_project 18 33840656 33846784 + MGP_C3HHeJ_P0049000 1700066B19Rik protein_coding protein_coding MGP_C3HHeJ_T0006945.1 MGP_C3HHeJ_G0005704.1 mouse_genomes_project 18 48387917 48402821 - 1700065O20Rik lincRNA lincRNA MGP_C3HHeJ_T0100387.1 MGP_C3HHeJ_G0038581.1 mouse_genomes_project 18 74515724 74515845 - Gm24559 snoRNA snoRNA MGP_C3HHeJ_T0098245.1 MGP_C3HHeJ_G0036457.1 mouse_genomes_project 18 24761106 24761334 - Gm26106 ribozyme ribozyme MGP_C3HHeJ_T0098090.1 MGP_C3HHeJ_G0036302.1 mouse_genomes_project 18 73087381 73087529 - n-R5-8s1 rRNA rRNA MGP_C3HHeJ_T0017394.1 MGP_C3HHeJ_G0015122.1 mouse_genomes_project 18 35330328 35349009 - Gm10544 processed_transcript antisense MGP_C3HHeJ_T0017395.1 MGP_C3HHeJ_G0015122.1 mouse_genomes_project 18 35346083 35348993 - Gm10544 processed_transcript antisense MGP_C3HHeJ_T0017396.1 MGP_C3HHeJ_G0015122.1 mouse_genomes_project 18 35347244 35349001 - Gm10544 processed_transcript retained_intron MGP_C3HHeJ_T0049094.1 MGP_C3HHeJ_G0024045.1 mouse_genomes_project 18 35502246 35505928 + MGP_C3HHeJ_P0049094 Pcdhb3 protein_coding protein_coding MGP_C3HHeJ_T0049794.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76570892 76611557 + MGP_C3HHeJ_P0049794 Hdhd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049796.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76584893 76601711 + MGP_C3HHeJ_P0049796 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049797.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76584893 76612279 + MGP_C3HHeJ_P0049797 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049798.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76584904 76601711 + MGP_C3HHeJ_P0049798 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049799.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76584904 76611557 + MGP_C3HHeJ_P0049799 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049800.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76584929 76596555 + MGP_C3HHeJ_P0049800 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049801.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76585162 76594715 + MGP_C3HHeJ_P0049801 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049802.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76585162 76613010 + MGP_C3HHeJ_P0049802 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049803.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76585195 76612279 + MGP_C3HHeJ_P0049803 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049804.1 MGP_C3HHeJ_G0024305.1 mouse_genomes_project 18 76585214 76613010 + MGP_C3HHeJ_P0049804 Hdhd2 protein_coding protein_coding MGP_C3HHeJ_T0049713.1 MGP_C3HHeJ_G0024276.1 mouse_genomes_project 18 69704634 69708790 - MGP_C3HHeJ_P0049713 Dynap protein_coding protein_coding MGP_C3HHeJ_T0049193.1 MGP_C3HHeJ_G0024095.1 mouse_genomes_project 18 36506130 36527422 + MGP_C3HHeJ_P0049193 Rnf14 protein_coding protein_coding MGP_C3HHeJ_T0006958.1 MGP_C3HHeJ_G0005713.1 mouse_genomes_project 18 65235818 65238728 + Raxos1 lincRNA lincRNA MGP_C3HHeJ_T0049478.1 MGP_C3HHeJ_G0024206.1 mouse_genomes_project 18 60073726 60092546 - MGP_C3HHeJ_P0049478 Slc6a7 protein_coding protein_coding MGP_C3HHeJ_T0049057.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34975803 34983430 + Hars2 protein_coding processed_transcript MGP_C3HHeJ_T0049058.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34975803 34985374 + MGP_C3HHeJ_P0049058 Hars2 protein_coding protein_coding MGP_C3HHeJ_T0049059.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34976026 34984506 + MGP_C3HHeJ_P0049059 Hars2 protein_coding protein_coding MGP_C3HHeJ_T0049060.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34976064 34979275 + Hars2 protein_coding retained_intron MGP_C3HHeJ_T0049061.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34979824 34981074 + Hars2 protein_coding retained_intron MGP_C3HHeJ_T0049062.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34980631 34982971 + Hars2 protein_coding retained_intron MGP_C3HHeJ_T0049063.1 MGP_C3HHeJ_G0024025.1 mouse_genomes_project 18 34982824 34984265 + Hars2 protein_coding retained_intron MGP_C3HHeJ_T0049239.1 MGP_C3HHeJ_G0024108.1 mouse_genomes_project 18 40389223 40503912 + MGP_C3HHeJ_P0049239 Sh3rf2 protein_coding protein_coding MGP_C3HHeJ_T0049240.1 MGP_C3HHeJ_G0024108.1 mouse_genomes_project 18 40389266 40503403 + MGP_C3HHeJ_P0049240 Sh3rf2 protein_coding protein_coding MGP_C3HHeJ_T0049241.1 MGP_C3HHeJ_G0024108.1 mouse_genomes_project 18 40485393 40501077 + Sh3rf2 protein_coding processed_transcript MGP_C3HHeJ_T0049242.1 MGP_C3HHeJ_G0024108.1 mouse_genomes_project 18 40485481 40498091 + Sh3rf2 protein_coding processed_transcript MGP_C3HHeJ_T0006966.1 MGP_C3HHeJ_G0005721.1 mouse_genomes_project 18 82736208 82750892 + 4930445N18Rik lincRNA lincRNA MGP_C3HHeJ_T0006967.1 MGP_C3HHeJ_G0005721.1 mouse_genomes_project 18 82736211 82739477 + 4930445N18Rik lincRNA lincRNA MGP_C3HHeJ_T0013184.1 MGP_C3HHeJ_G0011288.1 mouse_genomes_project 18 23604272 23605049 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003746.1 MGP_C3HHeJ_G0003366.1 mouse_genomes_project 18 37644846 37667266 - Gm15337 antisense antisense MGP_C3HHeJ_T0049137.1 MGP_C3HHeJ_G0024079.1 mouse_genomes_project 18 35932320 36038769 + MGP_C3HHeJ_P0049137 Pcdhgb6 protein_coding protein_coding MGP_C3HHeJ_T0049272.1 MGP_C3HHeJ_G0024124.1 mouse_genomes_project 18 42375439 42435784 + MGP_C3HHeJ_P0049272 Spink5 protein_coding protein_coding MGP_C3HHeJ_T0099114.1 MGP_C3HHeJ_G0037308.1 mouse_genomes_project 18 21497486 21497588 - Gm23207 snRNA snRNA MGP_C3HHeJ_T0049517.1 MGP_C3HHeJ_G0024222.1 mouse_genomes_project 18 61313166 61315309 - MGP_C3HHeJ_P0049517 Adrb2 protein_coding protein_coding MGP_C3HHeJ_T0049781.1 MGP_C3HHeJ_G0024301.1 mouse_genomes_project 18 75487621 75830532 + MGP_C3HHeJ_P0049781 Zbtb7c protein_coding protein_coding MGP_C3HHeJ_T0049782.1 MGP_C3HHeJ_G0024301.1 mouse_genomes_project 18 75737627 75828413 + MGP_C3HHeJ_P0049782 Zbtb7c protein_coding protein_coding MGP_C3HHeJ_T0048690.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9326418 9338735 + 3110002H16Rik protein_coding retained_intron MGP_C3HHeJ_T0048691.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9326418 9347589 + MGP_C3HHeJ_P0048691 3110002H16Rik protein_coding protein_coding MGP_C3HHeJ_T0048692.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9326440 9338190 + 3110002H16Rik protein_coding retained_intron MGP_C3HHeJ_T0048693.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9326453 9347566 + 3110002H16Rik protein_coding retained_intron MGP_C3HHeJ_T0048694.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9337188 9342535 + MGP_C3HHeJ_P0048694 3110002H16Rik protein_coding protein_coding MGP_C3HHeJ_T0048695.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9338143 9345813 + MGP_C3HHeJ_P0048695 3110002H16Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048696.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9343034 9347566 + 3110002H16Rik protein_coding retained_intron MGP_C3HHeJ_T0048697.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9343258 9347523 + 3110002H16Rik protein_coding retained_intron MGP_C3HHeJ_T0048698.1 MGP_C3HHeJ_G0023885.1 mouse_genomes_project 18 9346585 9347566 + 3110002H16Rik protein_coding retained_intron MGP_C3HHeJ_T0010193.1 MGP_C3HHeJ_G0008326.1 mouse_genomes_project 18 82591865 82591925 + Mir5112 miRNA miRNA MGP_C3HHeJ_T0011372.1 MGP_C3HHeJ_G0009505.1 mouse_genomes_project 18 77505381 77505734 - Gm23954 misc_RNA misc_RNA MGP_C3HHeJ_T0048820.1 MGP_C3HHeJ_G0023934.1 mouse_genomes_project 18 22211120 22259551 - MGP_C3HHeJ_P0048820 Rprd1a protein_coding protein_coding MGP_C3HHeJ_T0049225.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37689404 37770757 - MGP_C3HHeJ_P0049225 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049226.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37689406 37767293 - MGP_C3HHeJ_P0049226 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049227.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37690847 37769930 - MGP_C3HHeJ_P0049227 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049228.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37693342 37767280 - MGP_C3HHeJ_P0049228 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049229.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37703289 37769972 - MGP_C3HHeJ_P0049229 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049230.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37766918 37771747 - MGP_C3HHeJ_P0049230 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049231.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37767133 37769367 - MGP_C3HHeJ_P0049231 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0049232.1 MGP_C3HHeJ_G0024101.1 mouse_genomes_project 18 37767207 37771745 - MGP_C3HHeJ_P0049232 Nr3c1 protein_coding protein_coding MGP_C3HHeJ_T0006921.1 MGP_C3HHeJ_G0005687.1 mouse_genomes_project 18 14198204 14204581 + Gm15328 lincRNA lincRNA MGP_C3HHeJ_T0010190.1 MGP_C3HHeJ_G0008323.1 mouse_genomes_project 18 75853613 75853714 + Mir6358 miRNA miRNA MGP_C3HHeJ_T0048926.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32665184 32686201 - MGP_C3HHeJ_P0048926 Cdc23 protein_coding protein_coding MGP_C3HHeJ_T0048927.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32665916 32686201 - MGP_C3HHeJ_P0048927 Cdc23 protein_coding protein_coding MGP_C3HHeJ_T0048928.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32667894 32668847 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0048929.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32670585 32686184 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0048930.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32670588 32671624 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0048931.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32671590 32672403 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0048932.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32675705 32679618 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0048933.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32681322 32686184 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0048934.1 MGP_C3HHeJ_G0023980.1 mouse_genomes_project 18 32682168 32686188 - Cdc23 protein_coding retained_intron MGP_C3HHeJ_T0013168.1 MGP_C3HHeJ_G0011272.1 mouse_genomes_project 18 6683127 6684130 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049633.1 MGP_C3HHeJ_G0024267.1 mouse_genomes_project 18 67349614 67674528 + MGP_C3HHeJ_P0049633 Ldlrad4 protein_coding protein_coding MGP_C3HHeJ_T0000975.1 MGP_C3HHeJ_G0000912.1 mouse_genomes_project 18 53901650 53901862 + TEC TEC MGP_C3HHeJ_T0049190.1 MGP_C3HHeJ_G0024094.1 mouse_genomes_project 18 36475808 36486650 - Pcdh12 protein_coding retained_intron MGP_C3HHeJ_T0049191.1 MGP_C3HHeJ_G0024094.1 mouse_genomes_project 18 36477544 36492772 - MGP_C3HHeJ_P0049191 Pcdh12 protein_coding protein_coding MGP_C3HHeJ_T0049192.1 MGP_C3HHeJ_G0024094.1 mouse_genomes_project 18 36489456 36493101 - Pcdh12 protein_coding retained_intron MGP_C3HHeJ_T0048887.1 MGP_C3HHeJ_G0023968.1 mouse_genomes_project 18 31458104 31465159 + MGP_C3HHeJ_P0048887 Gm10549 protein_coding protein_coding MGP_C3HHeJ_T0049126.1 MGP_C3HHeJ_G0024072.1 mouse_genomes_project 18 35883068 36038769 + MGP_C3HHeJ_P0049126 Pcdhga5 protein_coding protein_coding MGP_C3HHeJ_T0048777.1 MGP_C3HHeJ_G0023922.1 mouse_genomes_project 18 19462440 19828633 - MGP_C3HHeJ_P0048777 Ccdc178 protein_coding protein_coding MGP_C3HHeJ_T0048778.1 MGP_C3HHeJ_G0023922.1 mouse_genomes_project 18 19462841 19823761 - MGP_C3HHeJ_P0048778 Ccdc178 protein_coding protein_coding MGP_C3HHeJ_T0010167.1 MGP_C3HHeJ_G0008300.1 mouse_genomes_project 18 40656417 40656480 + Gm22697 miRNA miRNA MGP_C3HHeJ_T0049153.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36040496 36134532 - MGP_C3HHeJ_P0049153 Diaph1 protein_coding protein_coding MGP_C3HHeJ_T0049154.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36040498 36134437 - MGP_C3HHeJ_P0049154 Diaph1 protein_coding protein_coding MGP_C3HHeJ_T0049155.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36040498 36134479 - MGP_C3HHeJ_P0049155 Diaph1 protein_coding protein_coding MGP_C3HHeJ_T0049156.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36040500 36103852 - MGP_C3HHeJ_P0049156 Diaph1 protein_coding protein_coding MGP_C3HHeJ_T0049157.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36041719 36134467 - MGP_C3HHeJ_P0049157 Diaph1 protein_coding protein_coding MGP_C3HHeJ_T0049158.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36041995 36050278 - Diaph1 protein_coding processed_transcript MGP_C3HHeJ_T0049159.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36052350 36053010 - Diaph1 protein_coding retained_intron MGP_C3HHeJ_T0049160.1 MGP_C3HHeJ_G0024087.1 mouse_genomes_project 18 36093767 36095556 - Diaph1 protein_coding retained_intron MGP_C3HHeJ_T0006939.1 MGP_C3HHeJ_G0005700.1 mouse_genomes_project 18 35842110 35848407 + 3222401L13Rik lincRNA lincRNA MGP_C3HHeJ_T0006940.1 MGP_C3HHeJ_G0005700.1 mouse_genomes_project 18 35842566 35845401 + 3222401L13Rik lincRNA lincRNA MGP_C3HHeJ_T0049634.1 MGP_C3HHeJ_G0024268.1 mouse_genomes_project 18 67679165 67720291 - MGP_C3HHeJ_P0049634 Fam210a protein_coding protein_coding MGP_C3HHeJ_T0049635.1 MGP_C3HHeJ_G0024268.1 mouse_genomes_project 18 67694894 67720160 - MGP_C3HHeJ_P0049635 Fam210a protein_coding protein_coding MGP_C3HHeJ_T0049307.1 MGP_C3HHeJ_G0024141.1 mouse_genomes_project 18 44963357 44988024 - MGP_C3HHeJ_P0049307 Fem1c protein_coding protein_coding MGP_C3HHeJ_T0049363.1 MGP_C3HHeJ_G0024160.1 mouse_genomes_project 18 51119270 51144464 + MGP_C3HHeJ_P0049363 Srfbp1 protein_coding protein_coding MGP_C3HHeJ_T0049584.1 MGP_C3HHeJ_G0024244.1 mouse_genomes_project 18 64978865 65029085 + MGP_C3HHeJ_P0049584 Oacyl protein_coding protein_coding MGP_C3HHeJ_T0049585.1 MGP_C3HHeJ_G0024244.1 mouse_genomes_project 18 64978867 65029149 + MGP_C3HHeJ_P0049585 Oacyl protein_coding protein_coding MGP_C3HHeJ_T0049586.1 MGP_C3HHeJ_G0024244.1 mouse_genomes_project 18 65026563 65027936 + Oacyl protein_coding processed_transcript MGP_C3HHeJ_T0003766.1 MGP_C3HHeJ_G0003377.1 mouse_genomes_project 18 80093516 80096787 + Gm26676 antisense antisense MGP_C3HHeJ_T0010189.1 MGP_C3HHeJ_G0008322.1 mouse_genomes_project 18 74519553 74519635 - Gm25594 miRNA miRNA MGP_C3HHeJ_T0049927.1 MGP_C3HHeJ_G0024343.1 mouse_genomes_project 18 84660310 84670329 + MGP_C3HHeJ_P0049927 Fam69c protein_coding protein_coding MGP_C3HHeJ_T0049928.1 MGP_C3HHeJ_G0024343.1 mouse_genomes_project 18 84660533 84679782 + MGP_C3HHeJ_P0049928 Fam69c protein_coding protein_coding MGP_C3HHeJ_T0049929.1 MGP_C3HHeJ_G0024343.1 mouse_genomes_project 18 84660568 84678750 + Fam69c protein_coding processed_transcript MGP_C3HHeJ_T0049930.1 MGP_C3HHeJ_G0024343.1 mouse_genomes_project 18 84661174 84670106 + Fam69c protein_coding processed_transcript MGP_C3HHeJ_T0049939.1 MGP_C3HHeJ_G0024347.1 mouse_genomes_project 18 86364997 86478554 + MGP_C3HHeJ_P0049939 Neto1 protein_coding protein_coding MGP_C3HHeJ_T0010182.1 MGP_C3HHeJ_G0008315.1 mouse_genomes_project 18 60760976 60761039 - Mir143 miRNA miRNA MGP_C3HHeJ_T0048856.1 MGP_C3HHeJ_G0023949.1 mouse_genomes_project 18 29722180 29748119 + MGP_C3HHeJ_P0048856 Ammecr1l protein_coding protein_coding MGP_C3HHeJ_T0098083.1 MGP_C3HHeJ_G0036295.1 mouse_genomes_project 18 32537152 32537269 + n-R5s24 rRNA rRNA MGP_C3HHeJ_T0100374.1 MGP_C3HHeJ_G0038568.1 mouse_genomes_project 18 32996751 32996818 - Gm22200 snoRNA snoRNA MGP_C3HHeJ_T0049751.1 MGP_C3HHeJ_G0024289.1 mouse_genomes_project 18 73764126 73776504 - MGP_C3HHeJ_P0049751 Ska1 protein_coding protein_coding MGP_C3HHeJ_T0049752.1 MGP_C3HHeJ_G0024289.1 mouse_genomes_project 18 73764126 73776504 - MGP_C3HHeJ_P0049752 Ska1 protein_coding protein_coding MGP_C3HHeJ_T0048791.1 MGP_C3HHeJ_G0023925.1 mouse_genomes_project 18 21096935 21346410 + MGP_C3HHeJ_P0048791 Dtna protein_coding protein_coding MGP_C3HHeJ_T0048792.1 MGP_C3HHeJ_G0023925.1 mouse_genomes_project 18 21096935 21290604 + MGP_C3HHeJ_P0048792 Dtna protein_coding protein_coding MGP_C3HHeJ_T0048793.1 MGP_C3HHeJ_G0023925.1 mouse_genomes_project 18 21308228 21320023 + MGP_C3HHeJ_P0048793 Dtna protein_coding unknown_likely_coding MGP_C3HHeJ_T0049647.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68784714 69012562 + MGP_C3HHeJ_P0049647 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049648.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68785504 69135562 + MGP_C3HHeJ_P0049648 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049649.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68785847 69140295 + MGP_C3HHeJ_P0049649 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049650.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68785850 69134597 + MGP_C3HHeJ_P0049650 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049651.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68785887 69134485 + MGP_C3HHeJ_P0049651 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049652.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68785897 69013227 + MGP_C3HHeJ_P0049652 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049653.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787065 69139182 + MGP_C3HHeJ_P0049653 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049654.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787065 69135741 + MGP_C3HHeJ_P0049654 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049655.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787065 69134611 + MGP_C3HHeJ_P0049655 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049656.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787093 69134419 + MGP_C3HHeJ_P0049656 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049657.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787095 69087148 + MGP_C3HHeJ_P0049657 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049658.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787105 68931708 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049659.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787195 69134419 + MGP_C3HHeJ_P0049659 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049660.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787518 69083970 + MGP_C3HHeJ_P0049660 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049661.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68787717 69134446 + MGP_C3HHeJ_P0049661 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049662.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68789634 69134419 + MGP_C3HHeJ_P0049662 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049663.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68789680 68799703 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049664.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68790588 69013121 + MGP_C3HHeJ_P0049664 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049665.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68790599 69134659 + MGP_C3HHeJ_P0049665 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049666.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68790601 69013128 + MGP_C3HHeJ_P0049666 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049667.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68790856 69134670 + MGP_C3HHeJ_P0049667 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049668.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68790956 69102728 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049669.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68791310 69093237 + MGP_C3HHeJ_P0049669 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049670.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68859663 69134660 + MGP_C3HHeJ_P0049670 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049671.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68943263 69087196 + MGP_C3HHeJ_P0049671 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049672.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68945179 69134466 + MGP_C3HHeJ_P0049672 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049673.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68945318 69108981 + MGP_C3HHeJ_P0049673 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049674.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68945440 69102769 + MGP_C3HHeJ_P0049674 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049675.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68966996 69134475 + MGP_C3HHeJ_P0049675 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049676.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68967235 69093293 + MGP_C3HHeJ_P0049676 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049677.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68967283 69134419 + MGP_C3HHeJ_P0049677 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049678.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68967293 69134498 + MGP_C3HHeJ_P0049678 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049679.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68967338 69087233 + MGP_C3HHeJ_P0049679 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049680.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68968672 69093253 + MGP_C3HHeJ_P0049680 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049681.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68968785 69134343 + MGP_C3HHeJ_P0049681 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049682.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68968988 69109180 + MGP_C3HHeJ_P0049682 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049683.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68969011 68971847 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049684.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68969025 69013167 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049685.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68969348 69134481 + MGP_C3HHeJ_P0049685 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049686.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68969488 69087195 + MGP_C3HHeJ_P0049686 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049687.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 68969668 69084016 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049688.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69011486 69101523 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049689.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69011814 69087274 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049690.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041494 69134666 + MGP_C3HHeJ_P0049690 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049691.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041845 69109128 + MGP_C3HHeJ_P0049691 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049692.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041886 69126935 + MGP_C3HHeJ_P0049692 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049693.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041892 69133924 + MGP_C3HHeJ_P0049693 Tcf4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049694.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041899 69135743 + MGP_C3HHeJ_P0049694 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049695.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041900 69084106 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049696.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041900 69045924 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049697.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69041917 69109097 + Tcf4 protein_coding processed_transcript MGP_C3HHeJ_T0049698.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69042056 69101547 + MGP_C3HHeJ_P0049698 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049699.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69042657 69108995 + MGP_C3HHeJ_P0049699 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049700.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69048009 69102716 + MGP_C3HHeJ_P0049700 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049701.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69060908 69134419 + MGP_C3HHeJ_P0049701 Tcf4 protein_coding protein_coding MGP_C3HHeJ_T0049702.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69107896 69111522 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049703.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69130901 69135743 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049704.1 MGP_C3HHeJ_G0024273.1 mouse_genomes_project 18 69133580 69134853 + Tcf4 protein_coding retained_intron MGP_C3HHeJ_T0049004.1 MGP_C3HHeJ_G0024005.1 mouse_genomes_project 18 33953602 33988894 + MGP_C3HHeJ_P0049004 Cxxc5 protein_coding protein_coding MGP_C3HHeJ_T0049613.1 MGP_C3HHeJ_G0024254.1 mouse_genomes_project 18 66598425 66621589 - MGP_C3HHeJ_P0049613 Mppe1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049614.1 MGP_C3HHeJ_G0024254.1 mouse_genomes_project 18 66598912 66622242 - MGP_C3HHeJ_P0049614 Mppe1 protein_coding protein_coding MGP_C3HHeJ_T0000981.1 MGP_C3HHeJ_G0000918.1 mouse_genomes_project 18 80135877 80138923 + TEC TEC MGP_C3HHeJ_T0049293.1 MGP_C3HHeJ_G0024136.1 mouse_genomes_project 18 43258484 43327366 + MGP_C3HHeJ_P0049293 Ythdc2 protein_coding protein_coding MGP_C3HHeJ_T0049294.1 MGP_C3HHeJ_G0024136.1 mouse_genomes_project 18 43282990 43284321 + Ythdc2 protein_coding retained_intron MGP_C3HHeJ_T0049295.1 MGP_C3HHeJ_G0024136.1 mouse_genomes_project 18 43290584 43327373 + MGP_C3HHeJ_P0049295 Ythdc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049043.1 MGP_C3HHeJ_G0024016.1 mouse_genomes_project 18 34862586 34865089 + MGP_C3HHeJ_P0049043 protein_coding protein_coding MGP_C3HHeJ_T0049044.1 MGP_C3HHeJ_G0024016.1 mouse_genomes_project 18 34862835 34864965 + protein_coding processed_transcript MGP_C3HHeJ_T0049045.1 MGP_C3HHeJ_G0024016.1 mouse_genomes_project 18 34862844 34864222 + protein_coding processed_transcript MGP_C3HHeJ_T0049244.1 MGP_C3HHeJ_G0024110.1 mouse_genomes_project 18 40524805 40541908 - MGP_C3HHeJ_P0049244 Plac8l1 protein_coding protein_coding MGP_C3HHeJ_T0049471.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60001491 60065667 + MGP_C3HHeJ_P0049471 Camk2a protein_coding protein_coding MGP_C3HHeJ_T0049472.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60001505 60019752 + Camk2a protein_coding retained_intron MGP_C3HHeJ_T0049473.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60001505 60063838 + MGP_C3HHeJ_P0049473 Camk2a protein_coding protein_coding MGP_C3HHeJ_T0049474.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60001598 60019770 + MGP_C3HHeJ_P0049474 Camk2a protein_coding protein_coding MGP_C3HHeJ_T0049475.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60002822 60032009 + MGP_C3HHeJ_P0049475 Camk2a protein_coding protein_coding MGP_C3HHeJ_T0049476.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60039927 60062294 + MGP_C3HHeJ_P0049476 Camk2a protein_coding protein_coding MGP_C3HHeJ_T0049477.1 MGP_C3HHeJ_G0024205.1 mouse_genomes_project 18 60039973 60063128 + MGP_C3HHeJ_P0049477 Camk2a protein_coding protein_coding MGP_C3HHeJ_T0049733.1 MGP_C3HHeJ_G0024283.1 mouse_genomes_project 18 73195424 73252485 - MGP_C3HHeJ_P0049733 Smad4 protein_coding protein_coding MGP_C3HHeJ_T0049734.1 MGP_C3HHeJ_G0024283.1 mouse_genomes_project 18 73196411 73236806 - MGP_C3HHeJ_P0049734 Smad4 protein_coding protein_coding MGP_C3HHeJ_T0049735.1 MGP_C3HHeJ_G0024283.1 mouse_genomes_project 18 73196568 73199039 - Smad4 protein_coding processed_transcript MGP_C3HHeJ_T0049736.1 MGP_C3HHeJ_G0024283.1 mouse_genomes_project 18 73196622 73206508 - Smad4 protein_coding processed_transcript MGP_C3HHeJ_T0049737.1 MGP_C3HHeJ_G0024283.1 mouse_genomes_project 18 73196633 73221395 - Smad4 protein_coding processed_transcript MGP_C3HHeJ_T0049738.1 MGP_C3HHeJ_G0024283.1 mouse_genomes_project 18 73217393 73233726 - Smad4 protein_coding processed_transcript MGP_C3HHeJ_T0100382.1 MGP_C3HHeJ_G0038576.1 mouse_genomes_project 18 55015496 55015631 + Gm23555 snoRNA snoRNA MGP_C3HHeJ_T0049358.1 MGP_C3HHeJ_G0024155.1 mouse_genomes_project 18 48882939 48887590 + MGP_C3HHeJ_P0049358 Fam170a protein_coding protein_coding MGP_C3HHeJ_T0017422.1 MGP_C3HHeJ_G0015130.1 mouse_genomes_project 18 65615618 65645945 + Gm15958 processed_transcript processed_transcript MGP_C3HHeJ_T0017423.1 MGP_C3HHeJ_G0015130.1 mouse_genomes_project 18 65616231 65638659 + Gm15958 processed_transcript processed_transcript MGP_C3HHeJ_T0100393.1 MGP_C3HHeJ_G0038587.1 mouse_genomes_project 18 81818527 81818655 + Gm26012 snoRNA snoRNA MGP_C3HHeJ_T0049141.1 MGP_C3HHeJ_G0024083.1 mouse_genomes_project 18 35961159 36038769 + MGP_C3HHeJ_P0049141 Pcdhga12 protein_coding protein_coding MGP_C3HHeJ_T0049142.1 MGP_C3HHeJ_G0024083.1 mouse_genomes_project 18 35961370 35965726 + Pcdhga12 protein_coding retained_intron MGP_C3HHeJ_T0011356.1 MGP_C3HHeJ_G0009489.1 mouse_genomes_project 18 23373121 23373431 - Gm25845 misc_RNA misc_RNA MGP_C3HHeJ_T0049237.1 MGP_C3HHeJ_G0024106.1 mouse_genomes_project 18 40206343 40282952 - MGP_C3HHeJ_P0049237 Prelid2 protein_coding protein_coding MGP_C3HHeJ_T0011355.1 MGP_C3HHeJ_G0009488.1 mouse_genomes_project 18 22490164 22490441 + Gm24294 misc_RNA misc_RNA MGP_C3HHeJ_T0049913.1 MGP_C3HHeJ_G0024338.1 mouse_genomes_project 18 83943919 84018777 - MGP_C3HHeJ_P0049913 Tshz1 protein_coding protein_coding MGP_C3HHeJ_T0049914.1 MGP_C3HHeJ_G0024338.1 mouse_genomes_project 18 83944374 84018763 - Tshz1 protein_coding processed_transcript MGP_C3HHeJ_T0048960.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658465 33670203 + MGP_C3HHeJ_P0048960 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048961.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658477 33692020 + MGP_C3HHeJ_P0048961 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048962.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658511 33669836 + MGP_C3HHeJ_P0048962 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048963.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658530 33688760 + MGP_C3HHeJ_P0048963 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048964.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658536 33688760 + MGP_C3HHeJ_P0048964 Matr3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048965.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658538 33688760 + MGP_C3HHeJ_P0048965 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048966.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658618 33688760 + MGP_C3HHeJ_P0048966 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048967.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658764 33688842 + MGP_C3HHeJ_P0048967 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048968.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658772 33688820 + MGP_C3HHeJ_P0048968 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048969.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33658806 33676718 + MGP_C3HHeJ_P0048969 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048970.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33659002 33669916 + MGP_C3HHeJ_P0048970 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048971.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33659008 33677003 + MGP_C3HHeJ_P0048971 Matr3 protein_coding protein_coding MGP_C3HHeJ_T0048972.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33669639 33671446 + Matr3 protein_coding retained_intron MGP_C3HHeJ_T0048973.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33675640 33676986 + Matr3 protein_coding retained_intron MGP_C3HHeJ_T0048974.1 MGP_C3HHeJ_G0023994.1 mouse_genomes_project 18 33676736 33678436 + Matr3 protein_coding retained_intron MGP_C3HHeJ_T0049025.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34737643 34763832 + MGP_C3HHeJ_P0049025 Ankhd1 protein_coding protein_coding MGP_C3HHeJ_T0049026.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34738267 34842587 + MGP_C3HHeJ_P0049026 Ankhd1 protein_coding protein_coding MGP_C3HHeJ_T0049027.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34781332 34808633 + MGP_C3HHeJ_P0049027 Ankhd1 protein_coding protein_coding MGP_C3HHeJ_T0049028.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34787528 34818263 + Ankhd1 protein_coding processed_transcript MGP_C3HHeJ_T0049029.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34796552 34818251 + MGP_C3HHeJ_P0049029 Ankhd1 protein_coding protein_coding MGP_C3HHeJ_T0049030.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34796955 34808223 + Ankhd1 protein_coding retained_intron MGP_C3HHeJ_T0049031.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34822054 34826711 + MGP_C3HHeJ_P0049031 Ankhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049032.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34822278 34826717 + MGP_C3HHeJ_P0049032 Ankhd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049033.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34825095 34827993 + Ankhd1 protein_coding retained_intron MGP_C3HHeJ_T0049034.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34831538 34849594 + MGP_C3HHeJ_P0049034 Ankhd1 protein_coding protein_coding MGP_C3HHeJ_T0049035.1 MGP_C3HHeJ_G0024013.1 mouse_genomes_project 18 34839188 34842489 + MGP_C3HHeJ_P0049035 Ankhd1 protein_coding protein_coding MGP_C3HHeJ_T0013187.1 MGP_C3HHeJ_G0011291.1 mouse_genomes_project 18 30002790 30002948 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003761.1 MGP_C3HHeJ_G0003374.1 mouse_genomes_project 18 69402963 69431259 - 1700061H18Rik antisense antisense MGP_C3HHeJ_T0003762.1 MGP_C3HHeJ_G0003374.1 mouse_genomes_project 18 69406582 69431246 - 1700061H18Rik antisense antisense MGP_C3HHeJ_T0049189.1 MGP_C3HHeJ_G0024093.1 mouse_genomes_project 18 36458358 36470637 + MGP_C3HHeJ_P0049189 0610009O20Rik protein_coding protein_coding MGP_C3HHeJ_T0013203.1 MGP_C3HHeJ_G0011307.1 mouse_genomes_project 18 48832490 48833235 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099116.1 MGP_C3HHeJ_G0037310.1 mouse_genomes_project 18 31024466 31024570 - Gm22814 snRNA snRNA MGP_C3HHeJ_T0100364.1 MGP_C3HHeJ_G0038558.1 mouse_genomes_project 18 13197074 13197203 + Gm24228 snoRNA snoRNA MGP_C3HHeJ_T0049616.1 MGP_C3HHeJ_G0024256.1 mouse_genomes_project 18 66723505 66749728 + MGP_C3HHeJ_P0049616 Cidea protein_coding protein_coding MGP_C3HHeJ_T0049521.1 MGP_C3HHeJ_G0024226.1 mouse_genomes_project 18 61749291 61753228 - MGP_C3HHeJ_P0049521 Spink7 protein_coding protein_coding MGP_C3HHeJ_T0049936.1 MGP_C3HHeJ_G0024345.1 mouse_genomes_project 18 84888845 84941797 + MGP_C3HHeJ_P0049936 Fbxo15 protein_coding protein_coding MGP_C3HHeJ_T0049938.1 MGP_C3HHeJ_G0024345.1 mouse_genomes_project 18 84905845 84941797 + MGP_C3HHeJ_P0049938 Fbxo15 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049420.1 MGP_C3HHeJ_G0024184.1 mouse_genomes_project 18 56777795 56846741 + MGP_C3HHeJ_P0049420 Slc12a2 protein_coding protein_coding MGP_C3HHeJ_T0049083.1 MGP_C3HHeJ_G0024039.1 mouse_genomes_project 18 35202126 35205449 + Pcdha11 protein_coding retained_intron MGP_C3HHeJ_T0049084.1 MGP_C3HHeJ_G0024039.1 mouse_genomes_project 18 35202128 35331180 + Pcdha11 protein_coding retained_intron MGP_C3HHeJ_T0049085.1 MGP_C3HHeJ_G0024039.1 mouse_genomes_project 18 35202166 35358175 + MGP_C3HHeJ_P0049085 Pcdha11 protein_coding protein_coding MGP_C3HHeJ_T0049086.1 MGP_C3HHeJ_G0024039.1 mouse_genomes_project 18 35202246 35357906 + MGP_C3HHeJ_P0049086 Pcdha11 protein_coding protein_coding MGP_C3HHeJ_T0049087.1 MGP_C3HHeJ_G0024039.1 mouse_genomes_project 18 35203666 35355733 + MGP_C3HHeJ_P0049087 Pcdha11 protein_coding protein_coding MGP_C3HHeJ_T0049780.1 MGP_C3HHeJ_G0024300.1 mouse_genomes_project 18 75074613 75360604 - MGP_C3HHeJ_P0049780 Ctif protein_coding protein_coding MGP_C3HHeJ_T0099113.1 MGP_C3HHeJ_G0037307.1 mouse_genomes_project 18 18455367 18455513 - Gm24959 snRNA snRNA MGP_C3HHeJ_T0049276.1 MGP_C3HHeJ_G0024127.1 mouse_genomes_project 18 42510695 42514803 + MGP_C3HHeJ_P0049276 Spink12 protein_coding protein_coding MGP_C3HHeJ_T0048881.1 MGP_C3HHeJ_G0023966.1 mouse_genomes_project 18 31209426 31220006 - MGP_C3HHeJ_P0048881 Stard4 protein_coding protein_coding MGP_C3HHeJ_T0048882.1 MGP_C3HHeJ_G0023966.1 mouse_genomes_project 18 31209607 31219911 - MGP_C3HHeJ_P0048882 Stard4 protein_coding protein_coding MGP_C3HHeJ_T0048883.1 MGP_C3HHeJ_G0023966.1 mouse_genomes_project 18 31210910 31220061 - Stard4 protein_coding retained_intron MGP_C3HHeJ_T0049364.1 MGP_C3HHeJ_G0024161.1 mouse_genomes_project 18 51170276 51185918 - MGP_C3HHeJ_P0049364 Lox protein_coding protein_coding MGP_C3HHeJ_T0049365.1 MGP_C3HHeJ_G0024161.1 mouse_genomes_project 18 51171445 51185776 - MGP_C3HHeJ_P0049365 Lox protein_coding protein_coding MGP_C3HHeJ_T0049092.1 MGP_C3HHeJ_G0024044.1 mouse_genomes_project 18 35496265 35499080 + MGP_C3HHeJ_P0049092 Pcdhb2 protein_coding protein_coding MGP_C3HHeJ_T0049093.1 MGP_C3HHeJ_G0024044.1 mouse_genomes_project 18 35496293 35497875 + MGP_C3HHeJ_P0049093 Pcdhb2 protein_coding protein_coding MGP_C3HHeJ_T0013210.1 MGP_C3HHeJ_G0011314.1 mouse_genomes_project 18 54773489 54775736 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048828.1 MGP_C3HHeJ_G0023939.1 mouse_genomes_project 18 22437990 22887439 + MGP_C3HHeJ_P0048828 Fhod3 protein_coding protein_coding MGP_C3HHeJ_T0049053.1 MGP_C3HHeJ_G0024023.1 mouse_genomes_project 18 34956683 34959222 - Dnd1 protein_coding retained_intron MGP_C3HHeJ_T0049054.1 MGP_C3HHeJ_G0024023.1 mouse_genomes_project 18 34956685 34959206 - MGP_C3HHeJ_P0049054 Dnd1 protein_coding protein_coding MGP_C3HHeJ_T0049055.1 MGP_C3HHeJ_G0024023.1 mouse_genomes_project 18 34956687 34959206 - Dnd1 protein_coding retained_intron MGP_C3HHeJ_T0049172.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36156264 36159306 - Fchsd1 protein_coding retained_intron MGP_C3HHeJ_T0049173.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36156267 36168636 - MGP_C3HHeJ_P0049173 Fchsd1 protein_coding protein_coding MGP_C3HHeJ_T0049174.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36161798 36162896 - Fchsd1 protein_coding retained_intron MGP_C3HHeJ_T0049175.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36164505 36168631 - MGP_C3HHeJ_P0049175 Fchsd1 protein_coding protein_coding MGP_C3HHeJ_T0049176.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36164543 36166600 - Fchsd1 protein_coding retained_intron MGP_C3HHeJ_T0049177.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36166468 36166906 - Fchsd1 protein_coding retained_intron MGP_C3HHeJ_T0049178.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36166489 36168631 - MGP_C3HHeJ_P0049178 Fchsd1 protein_coding protein_coding MGP_C3HHeJ_T0049179.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36166490 36168619 - Fchsd1 protein_coding retained_intron MGP_C3HHeJ_T0049180.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36166655 36168631 - MGP_C3HHeJ_P0049180 Fchsd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049181.1 MGP_C3HHeJ_G0024090.1 mouse_genomes_project 18 36166683 36168390 - Fchsd1 protein_coding retained_intron MGP_C3HHeJ_T0049319.1 MGP_C3HHeJ_G0024148.1 mouse_genomes_project 18 45328348 45382751 + MGP_C3HHeJ_P0049319 Lvrn protein_coding protein_coding MGP_C3HHeJ_T0049320.1 MGP_C3HHeJ_G0024148.1 mouse_genomes_project 18 45328501 45381270 + MGP_C3HHeJ_P0049320 Lvrn protein_coding unknown_likely_coding MGP_C3HHeJ_T0017429.1 MGP_C3HHeJ_G0015132.1 mouse_genomes_project 18 75004448 75006207 - Gm20544 processed_transcript processed_transcript MGP_C3HHeJ_T0017430.1 MGP_C3HHeJ_G0015133.1 mouse_genomes_project 18 77492454 77495939 - F830208F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017431.1 MGP_C3HHeJ_G0015133.1 mouse_genomes_project 18 77492454 77495586 - F830208F22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0000976.1 MGP_C3HHeJ_G0000913.1 mouse_genomes_project 18 54091484 54091916 + TEC TEC MGP_C3HHeJ_T0049904.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82462402 82567852 - MGP_C3HHeJ_P0049904 Zfp236 protein_coding protein_coding MGP_C3HHeJ_T0049905.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82462404 82559804 - MGP_C3HHeJ_P0049905 Zfp236 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049906.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82464285 82487600 - MGP_C3HHeJ_P0049906 Zfp236 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049907.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82465964 82567162 - MGP_C3HHeJ_P0049907 Zfp236 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049908.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82465964 82567162 - MGP_C3HHeJ_P0049908 Zfp236 protein_coding protein_coding MGP_C3HHeJ_T0049909.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82511517 82512701 - Zfp236 protein_coding retained_intron MGP_C3HHeJ_T0049910.1 MGP_C3HHeJ_G0024336.1 mouse_genomes_project 18 82555196 82566284 - MGP_C3HHeJ_P0049910 Zfp236 protein_coding protein_coding MGP_C3HHeJ_T0048783.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20358012 20711491 - MGP_C3HHeJ_P0048783 Nol4 protein_coding protein_coding MGP_C3HHeJ_T0048784.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20358022 20523447 - MGP_C3HHeJ_P0048784 Nol4 protein_coding protein_coding MGP_C3HHeJ_T0048785.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20358222 20710105 - MGP_C3HHeJ_P0048785 Nol4 protein_coding protein_coding MGP_C3HHeJ_T0048786.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20359139 20523447 - MGP_C3HHeJ_P0048786 Nol4 protein_coding protein_coding MGP_C3HHeJ_T0048787.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20359365 20711527 - MGP_C3HHeJ_P0048787 Nol4 protein_coding protein_coding MGP_C3HHeJ_T0048788.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20496276 20501867 - Nol4 protein_coding processed_transcript MGP_C3HHeJ_T0048789.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20585806 20710388 - MGP_C3HHeJ_P0048789 Nol4 protein_coding protein_coding MGP_C3HHeJ_T0048790.1 MGP_C3HHeJ_G0023924.1 mouse_genomes_project 18 20594987 20623994 - Nol4 protein_coding processed_transcript MGP_C3HHeJ_T0006938.1 MGP_C3HHeJ_G0005699.1 mouse_genomes_project 18 35811683 35812549 + 4930517L18Rik lincRNA lincRNA MGP_C3HHeJ_T0013212.1 MGP_C3HHeJ_G0011316.1 mouse_genomes_project 18 59846446 59846858 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048847.1 MGP_C3HHeJ_G0023944.1 mouse_genomes_project 18 28876194 29239879 - MGP_C3HHeJ_P0048847 Rit2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048848.1 MGP_C3HHeJ_G0023944.1 mouse_genomes_project 18 28877020 29239722 - MGP_C3HHeJ_P0048848 Rit2 protein_coding protein_coding MGP_C3HHeJ_T0048849.1 MGP_C3HHeJ_G0023944.1 mouse_genomes_project 18 29058612 29127261 - Rit2 protein_coding processed_transcript MGP_C3HHeJ_T0048850.1 MGP_C3HHeJ_G0023944.1 mouse_genomes_project 18 29120938 29239700 - MGP_C3HHeJ_P0048850 Rit2 protein_coding protein_coding MGP_C3HHeJ_T0011373.1 MGP_C3HHeJ_G0009506.1 mouse_genomes_project 18 84676443 84676733 - Gm22014 misc_RNA misc_RNA MGP_C3HHeJ_T0048708.1 MGP_C3HHeJ_G0023888.1 mouse_genomes_project 18 9500932 9764535 + MGP_C3HHeJ_P0048708 Lama3 protein_coding protein_coding MGP_C3HHeJ_T0048709.1 MGP_C3HHeJ_G0023888.1 mouse_genomes_project 18 9501251 9764185 + MGP_C3HHeJ_P0048709 Lama3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048710.1 MGP_C3HHeJ_G0023888.1 mouse_genomes_project 18 9673475 9764535 + MGP_C3HHeJ_P0048710 Lama3 protein_coding protein_coding MGP_C3HHeJ_T0010152.1 MGP_C3HHeJ_G0008285.1 mouse_genomes_project 18 7768310 7768378 - Mir133a-1 miRNA miRNA MGP_C3HHeJ_T0100367.1 MGP_C3HHeJ_G0038561.1 mouse_genomes_project 18 24307998 24308129 + Gm23674 snoRNA snoRNA MGP_C3HHeJ_T0049132.1 MGP_C3HHeJ_G0024076.1 mouse_genomes_project 18 35914088 36038769 + MGP_C3HHeJ_P0049132 Pcdhga8 protein_coding protein_coding MGP_C3HHeJ_T0049516.1 MGP_C3HHeJ_G0024221.1 mouse_genomes_project 18 61081147 61145191 + MGP_C3HHeJ_P0049516 Sh3tc2 protein_coding protein_coding MGP_C3HHeJ_T0013166.1 MGP_C3HHeJ_G0011270.1 mouse_genomes_project 18 4476078 4476486 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011351.1 MGP_C3HHeJ_G0009484.1 mouse_genomes_project 18 13562441 13562791 - Gm24385 misc_RNA misc_RNA MGP_C3HHeJ_T0013182.1 MGP_C3HHeJ_G0011286.1 mouse_genomes_project 18 21977899 21979380 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049833.1 MGP_C3HHeJ_G0024313.1 mouse_genomes_project 18 77455581 77465567 - MGP_C3HHeJ_P0049833 Haus1 protein_coding protein_coding MGP_C3HHeJ_T0011364.1 MGP_C3HHeJ_G0009497.1 mouse_genomes_project 18 42171071 42171384 + Gm23894 misc_RNA misc_RNA MGP_C3HHeJ_T0048674.1 MGP_C3HHeJ_G0023877.1 mouse_genomes_project 18 7597486 7607972 + MGP_C3HHeJ_P0048674 Snrpd1 protein_coding protein_coding MGP_C3HHeJ_T0006951.1 MGP_C3HHeJ_G0005709.1 mouse_genomes_project 18 60751322 60759073 + Bvht lincRNA lincRNA MGP_C3HHeJ_T0006952.1 MGP_C3HHeJ_G0005709.1 mouse_genomes_project 18 60751433 60759253 + Bvht lincRNA lincRNA MGP_C3HHeJ_T0003752.1 MGP_C3HHeJ_G0003370.1 mouse_genomes_project 18 55639861 55675180 + Gm15345 antisense antisense MGP_C3HHeJ_T0003726.1 MGP_C3HHeJ_G0003349.1 mouse_genomes_project 18 9670466 9673703 - Gm29200 antisense antisense MGP_C3HHeJ_T0049130.1 MGP_C3HHeJ_G0024075.1 mouse_genomes_project 18 35908742 36038766 + MGP_C3HHeJ_P0049130 Pcdhgb4 protein_coding protein_coding MGP_C3HHeJ_T0049131.1 MGP_C3HHeJ_G0024075.1 mouse_genomes_project 18 35908756 35917738 + Pcdhgb4 protein_coding processed_transcript MGP_C3HHeJ_T0048804.1 MGP_C3HHeJ_G0023929.1 mouse_genomes_project 18 21694582 21711845 + MGP_C3HHeJ_P0048804 Zfp35 protein_coding protein_coding MGP_C3HHeJ_T0049332.1 MGP_C3HHeJ_G0024151.1 mouse_genomes_project 18 48272562 48337953 - MGP_C3HHeJ_P0049332 Dtwd2 protein_coding protein_coding MGP_C3HHeJ_T0049333.1 MGP_C3HHeJ_G0024151.1 mouse_genomes_project 18 48273045 48337953 - MGP_C3HHeJ_P0049333 Dtwd2 protein_coding protein_coding MGP_C3HHeJ_T0049334.1 MGP_C3HHeJ_G0024151.1 mouse_genomes_project 18 48274201 48315288 - Dtwd2 protein_coding processed_transcript MGP_C3HHeJ_T0010186.1 MGP_C3HHeJ_G0008319.1 mouse_genomes_project 18 68163417 68163519 + Mir6356 miRNA miRNA MGP_C3HHeJ_T0049519.1 MGP_C3HHeJ_G0024224.1 mouse_genomes_project 18 61472604 61618936 + MGP_C3HHeJ_P0049519 Htr4 protein_coding protein_coding MGP_C3HHeJ_T0010161.1 MGP_C3HHeJ_G0008294.1 mouse_genomes_project 18 34088205 34088289 + Gm23882 miRNA miRNA MGP_C3HHeJ_T0049114.1 MGP_C3HHeJ_G0024063.1 mouse_genomes_project 18 35713213 35722219 + MGP_C3HHeJ_P0049114 Pcdhb22 protein_coding protein_coding MGP_C3HHeJ_T0049115.1 MGP_C3HHeJ_G0024063.1 mouse_genomes_project 18 35713702 35718912 + MGP_C3HHeJ_P0049115 Pcdhb22 protein_coding protein_coding MGP_C3HHeJ_T0048626.1 MGP_C3HHeJ_G0023861.1 mouse_genomes_project 18 3786227 3812891 - Mkx protein_coding processed_transcript MGP_C3HHeJ_T0048627.1 MGP_C3HHeJ_G0023861.1 mouse_genomes_project 18 3811238 3881518 - MGP_C3HHeJ_P0048627 Mkx protein_coding protein_coding MGP_C3HHeJ_T0048628.1 MGP_C3HHeJ_G0023861.1 mouse_genomes_project 18 3813221 3868245 - Mkx protein_coding retained_intron MGP_C3HHeJ_T0048629.1 MGP_C3HHeJ_G0023861.1 mouse_genomes_project 18 3877399 3880520 - Mkx protein_coding processed_transcript MGP_C3HHeJ_T0048630.1 MGP_C3HHeJ_G0023861.1 mouse_genomes_project 18 3879066 3881464 - Mkx protein_coding retained_intron MGP_C3HHeJ_T0049609.1 MGP_C3HHeJ_G0024251.1 mouse_genomes_project 18 65792697 65799644 + MGP_C3HHeJ_P0049609 Pmaip1 protein_coding protein_coding MGP_C3HHeJ_T0049275.1 MGP_C3HHeJ_G0024126.1 mouse_genomes_project 18 42478103 42490248 + MGP_C3HHeJ_P0049275 Spink6 protein_coding protein_coding MGP_C3HHeJ_T0049052.1 MGP_C3HHeJ_G0024022.1 mouse_genomes_project 18 34953245 34956721 + MGP_C3HHeJ_P0049052 Wdr55 protein_coding protein_coding MGP_C3HHeJ_T0048587.1 MGP_C3HHeJ_G0023853.1 mouse_genomes_project 18 2068715 2192129 - MGP_C3HHeJ_P0048587 Zfp438 protein_coding protein_coding MGP_C3HHeJ_T0006955.1 MGP_C3HHeJ_G0005711.1 mouse_genomes_project 18 61919151 61923495 - 2700046A07Rik lincRNA lincRNA MGP_C3HHeJ_T0006956.1 MGP_C3HHeJ_G0005711.1 mouse_genomes_project 18 61921969 61923527 - 2700046A07Rik lincRNA lincRNA MGP_C3HHeJ_T0101159.1 MGP_C3HHeJ_G0039315.1 mouse_genomes_project 18 35255434 35257176 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101160.1 MGP_C3HHeJ_G0039315.1 mouse_genomes_project 18 35256939 35257898 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0048935.1 MGP_C3HHeJ_G0023981.1 mouse_genomes_project 18 32731459 32763351 - MGP_C3HHeJ_P0048935 Gfra3 protein_coding protein_coding MGP_C3HHeJ_T0011371.1 MGP_C3HHeJ_G0009504.1 mouse_genomes_project 18 73169427 73169534 + Gm26438 misc_RNA misc_RNA MGP_C3HHeJ_T0049095.1 MGP_C3HHeJ_G0024046.1 mouse_genomes_project 18 35508806 35512522 + MGP_C3HHeJ_P0049095 Pcdhb4 protein_coding protein_coding MGP_C3HHeJ_T0100366.1 MGP_C3HHeJ_G0038560.1 mouse_genomes_project 18 20820225 20820351 + Gm22495 snoRNA snoRNA MGP_C3HHeJ_T0048765.1 MGP_C3HHeJ_G0023914.1 mouse_genomes_project 18 18264060 18264432 - MGP_C3HHeJ_P0048765 Gm10269 protein_coding protein_coding MGP_C3HHeJ_T0010174.1 MGP_C3HHeJ_G0008307.1 mouse_genomes_project 18 59179072 59179182 + Gm23576 miRNA miRNA MGP_C3HHeJ_T0013174.1 MGP_C3HHeJ_G0011278.1 mouse_genomes_project 18 9527440 9527871 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049773.1 MGP_C3HHeJ_G0024297.1 mouse_genomes_project 18 74622885 74627714 + MGP_C3HHeJ_P0049773 BC031181 protein_coding protein_coding MGP_C3HHeJ_T0013171.1 MGP_C3HHeJ_G0011275.1 mouse_genomes_project 18 9331501 9332456 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048614.1 MGP_C3HHeJ_G0023856.1 mouse_genomes_project 18 3053231 3095546 - MGP_C3HHeJ_P0048614 Kif5b protein_coding protein_coding MGP_C3HHeJ_T0048615.1 MGP_C3HHeJ_G0023856.1 mouse_genomes_project 18 3065552 3076100 - Kif5b protein_coding retained_intron MGP_C3HHeJ_T0048616.1 MGP_C3HHeJ_G0023856.1 mouse_genomes_project 18 3066686 3095493 - MGP_C3HHeJ_P0048616 Kif5b protein_coding protein_coding MGP_C3HHeJ_T0048617.1 MGP_C3HHeJ_G0023856.1 mouse_genomes_project 18 3072926 3075112 - Kif5b protein_coding retained_intron MGP_C3HHeJ_T0048618.1 MGP_C3HHeJ_G0023856.1 mouse_genomes_project 18 3095336 3096197 - Kif5b protein_coding processed_transcript MGP_C3HHeJ_T0049388.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55357751 55378239 - Aldh7a1 protein_coding processed_transcript MGP_C3HHeJ_T0049389.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55375207 55423721 - MGP_C3HHeJ_P0049389 Aldh7a1 protein_coding protein_coding MGP_C3HHeJ_T0049390.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55377994 55413438 - MGP_C3HHeJ_P0049390 Aldh7a1 protein_coding protein_coding MGP_C3HHeJ_T0049391.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55378133 55413419 - MGP_C3HHeJ_P0049391 Aldh7a1 protein_coding protein_coding MGP_C3HHeJ_T0049392.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55378139 55413328 - MGP_C3HHeJ_P0049392 Aldh7a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049393.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55383860 55388936 - Aldh7a1 protein_coding retained_intron MGP_C3HHeJ_T0049394.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55388566 55413336 - MGP_C3HHeJ_P0049394 Aldh7a1 protein_coding protein_coding MGP_C3HHeJ_T0049395.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55398126 55410535 - Aldh7a1 protein_coding retained_intron MGP_C3HHeJ_T0049396.1 MGP_C3HHeJ_G0024174.1 mouse_genomes_project 18 55401496 55413307 - MGP_C3HHeJ_P0049396 Aldh7a1 protein_coding protein_coding MGP_C3HHeJ_T0049091.1 MGP_C3HHeJ_G0024043.1 mouse_genomes_project 18 35460997 35463585 + MGP_C3HHeJ_P0049091 Pcdhb1 protein_coding protein_coding MGP_C3HHeJ_T0099133.1 MGP_C3HHeJ_G0037327.1 mouse_genomes_project 18 63115994 63116069 - Gm24384 snRNA snRNA MGP_C3HHeJ_T0049282.1 MGP_C3HHeJ_G0024131.1 mouse_genomes_project 18 42606709 42612878 + MGP_C3HHeJ_P0049282 Gm10542 protein_coding protein_coding MGP_C3HHeJ_T0099117.1 MGP_C3HHeJ_G0037311.1 mouse_genomes_project 18 32032437 32032498 - Gm22788 snRNA snRNA MGP_C3HHeJ_T0003737.1 MGP_C3HHeJ_G0003357.1 mouse_genomes_project 18 35200285 35213516 - Gm10545 antisense antisense MGP_C3HHeJ_T0049865.1 MGP_C3HHeJ_G0024327.1 mouse_genomes_project 18 79993468 80012170 - MGP_C3HHeJ_P0049865 Hsbp1l1 protein_coding protein_coding MGP_C3HHeJ_T0049258.1 MGP_C3HHeJ_G0024117.1 mouse_genomes_project 18 41597329 41716749 + MGP_C3HHeJ_P0049258 Stk32a protein_coding protein_coding MGP_C3HHeJ_T0006965.1 MGP_C3HHeJ_G0005720.1 mouse_genomes_project 18 82627812 82632349 - 2210420H20Rik lincRNA lincRNA MGP_C3HHeJ_T0049102.1 MGP_C3HHeJ_G0024051.1 mouse_genomes_project 18 35594219 35597274 + MGP_C3HHeJ_P0049102 Pcdhb9 protein_coding protein_coding MGP_C3HHeJ_T0049377.1 MGP_C3HHeJ_G0024166.1 mouse_genomes_project 18 51863514 51912368 + MGP_C3HHeJ_P0049377 Snx2 protein_coding protein_coding MGP_C3HHeJ_T0099119.1 MGP_C3HHeJ_G0037313.1 mouse_genomes_project 18 36506966 36507069 + Gm23205 snRNA snRNA MGP_C3HHeJ_T0049739.1 MGP_C3HHeJ_G0024284.1 mouse_genomes_project 18 73283867 73304019 - MGP_C3HHeJ_P0049739 Elac1 protein_coding protein_coding MGP_C3HHeJ_T0006948.1 MGP_C3HHeJ_G0005707.1 mouse_genomes_project 18 53736236 53831853 + Gm4221 lincRNA lincRNA MGP_C3HHeJ_T0006949.1 MGP_C3HHeJ_G0005707.1 mouse_genomes_project 18 53808349 53833930 + Gm4221 lincRNA lincRNA MGP_C3HHeJ_T0049617.1 MGP_C3HHeJ_G0024257.1 mouse_genomes_project 18 66774143 66787635 + MGP_C3HHeJ_P0049617 Tubb6 protein_coding protein_coding MGP_C3HHeJ_T0049916.1 MGP_C3HHeJ_G0024340.1 mouse_genomes_project 18 84060414 84500063 - MGP_C3HHeJ_P0049916 Zfp407 protein_coding protein_coding MGP_C3HHeJ_T0049917.1 MGP_C3HHeJ_G0024340.1 mouse_genomes_project 18 84137197 84529886 - MGP_C3HHeJ_P0049917 Zfp407 protein_coding protein_coding MGP_C3HHeJ_T0049918.1 MGP_C3HHeJ_G0024340.1 mouse_genomes_project 18 84208914 84346711 - Zfp407 protein_coding processed_transcript MGP_C3HHeJ_T0049919.1 MGP_C3HHeJ_G0024340.1 mouse_genomes_project 18 84364283 84369234 - Zfp407 protein_coding retained_intron MGP_C3HHeJ_T0049920.1 MGP_C3HHeJ_G0024340.1 mouse_genomes_project 18 84434206 84500013 - Zfp407 protein_coding processed_transcript MGP_C3HHeJ_T0049921.1 MGP_C3HHeJ_G0024340.1 mouse_genomes_project 18 84494547 84530107 - Zfp407 protein_coding processed_transcript MGP_C3HHeJ_T0049022.1 MGP_C3HHeJ_G0024011.1 mouse_genomes_project 18 34681049 34692139 - MGP_C3HHeJ_P0049022 Hbegf protein_coding protein_coding MGP_C3HHeJ_T0011357.1 MGP_C3HHeJ_G0009490.1 mouse_genomes_project 18 30278393 30278701 + Gm22325 misc_RNA misc_RNA MGP_C3HHeJ_T0006963.1 MGP_C3HHeJ_G0005718.1 mouse_genomes_project 18 77420231 77424021 - A330094K24Rik lincRNA lincRNA MGP_C3HHeJ_T0048819.1 MGP_C3HHeJ_G0023933.1 mouse_genomes_project 18 22198238 22205136 + MGP_C3HHeJ_P0048819 2700062C07Rik protein_coding protein_coding MGP_C3HHeJ_T0098087.1 MGP_C3HHeJ_G0036299.1 mouse_genomes_project 18 62709235 62709355 + Gm22560 rRNA rRNA MGP_C3HHeJ_T0100365.1 MGP_C3HHeJ_G0038559.1 mouse_genomes_project 18 14398286 14398416 + Gm22470 snoRNA snoRNA MGP_C3HHeJ_T0049890.1 MGP_C3HHeJ_G0024334.1 mouse_genomes_project 18 82246250 82260588 - MGP_C3HHeJ_P0049890 Galr1 protein_coding protein_coding MGP_C3HHeJ_T0098277.1 MGP_C3HHeJ_G0036489.1 mouse_genomes_project 18 74371840 74371980 - Gm23119 scaRNA scaRNA MGP_C3HHeJ_T0010171.1 MGP_C3HHeJ_G0008304.1 mouse_genomes_project 18 55389457 55389517 + Mir1258 miRNA miRNA MGP_C3HHeJ_T0049937.1 MGP_C3HHeJ_G0024346.1 mouse_genomes_project 18 84900984 84905215 - MGP_C3HHeJ_P0049937 Timm21 protein_coding protein_coding MGP_C3HHeJ_T0048655.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6937633 6972793 - MGP_C3HHeJ_P0048655 Usp14 protein_coding protein_coding MGP_C3HHeJ_T0048656.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6937795 6972719 - MGP_C3HHeJ_P0048656 Usp14 protein_coding protein_coding MGP_C3HHeJ_T0048657.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6939101 6942734 - Usp14 protein_coding retained_intron MGP_C3HHeJ_T0048658.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6943984 6950607 - Usp14 protein_coding retained_intron MGP_C3HHeJ_T0048659.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6951551 6972733 - Usp14 protein_coding retained_intron MGP_C3HHeJ_T0048660.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6954199 6959886 - Usp14 protein_coding retained_intron MGP_C3HHeJ_T0048661.1 MGP_C3HHeJ_G0023873.1 mouse_genomes_project 18 6966802 6972674 - Usp14 protein_coding retained_intron MGP_C3HHeJ_T0049559.1 MGP_C3HHeJ_G0024240.1 mouse_genomes_project 18 64133696 64475221 + MGP_C3HHeJ_P0049559 Nedd4l protein_coding protein_coding MGP_C3HHeJ_T0049560.1 MGP_C3HHeJ_G0024240.1 mouse_genomes_project 18 64276586 64475221 + MGP_C3HHeJ_P0049560 Nedd4l protein_coding protein_coding MGP_C3HHeJ_T0049561.1 MGP_C3HHeJ_G0024240.1 mouse_genomes_project 18 64395575 64475216 + MGP_C3HHeJ_P0049561 Nedd4l protein_coding unknown_likely_coding MGP_C3HHeJ_T0100380.1 MGP_C3HHeJ_G0038574.1 mouse_genomes_project 18 45469611 45469756 - Gm22791 snoRNA snoRNA MGP_C3HHeJ_T0049568.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64854579 64967760 + MGP_C3HHeJ_P0049568 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049569.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64854731 64897888 + MGP_C3HHeJ_P0049569 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049570.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64855436 64897877 + MGP_C3HHeJ_P0049570 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049571.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64855442 64897445 + MGP_C3HHeJ_P0049571 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049572.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64856092 64899703 + MGP_C3HHeJ_P0049572 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049573.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64856577 64898024 + MGP_C3HHeJ_P0049573 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049574.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64856632 64897452 + MGP_C3HHeJ_P0049574 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049575.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64856756 64967258 + MGP_C3HHeJ_P0049575 Zfp532 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049576.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64856864 64967257 + MGP_C3HHeJ_P0049576 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049577.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64856951 64897651 + MGP_C3HHeJ_P0049577 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049578.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64857276 64967251 + MGP_C3HHeJ_P0049578 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049579.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64857749 64897617 + MGP_C3HHeJ_P0049579 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049580.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64858271 64897562 + MGP_C3HHeJ_P0049580 Zfp532 protein_coding protein_coding MGP_C3HHeJ_T0049581.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64893633 64899295 + Zfp532 protein_coding retained_intron MGP_C3HHeJ_T0049582.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64899608 64959410 + Zfp532 protein_coding retained_intron MGP_C3HHeJ_T0049583.1 MGP_C3HHeJ_G0024243.1 mouse_genomes_project 18 64921891 64963939 + Zfp532 protein_coding processed_transcript MGP_C3HHeJ_T0010194.1 MGP_C3HHeJ_G0008327.1 mouse_genomes_project 18 89029387 89029468 + Mir6359 miRNA miRNA MGP_C3HHeJ_T0049775.1 MGP_C3HHeJ_G0024299.1 mouse_genomes_project 18 75006578 75036636 + MGP_C3HHeJ_P0049775 Smad7 protein_coding protein_coding MGP_C3HHeJ_T0049776.1 MGP_C3HHeJ_G0024299.1 mouse_genomes_project 18 75007926 75036181 + MGP_C3HHeJ_P0049776 Smad7 protein_coding protein_coding MGP_C3HHeJ_T0049777.1 MGP_C3HHeJ_G0024299.1 mouse_genomes_project 18 75008033 75034685 + MGP_C3HHeJ_P0049777 Smad7 protein_coding protein_coding MGP_C3HHeJ_T0049778.1 MGP_C3HHeJ_G0024299.1 mouse_genomes_project 18 75009019 75035064 + MGP_C3HHeJ_P0049778 Smad7 protein_coding protein_coding MGP_C3HHeJ_T0049779.1 MGP_C3HHeJ_G0024299.1 mouse_genomes_project 18 75013958 75034700 + Smad7 protein_coding processed_transcript MGP_C3HHeJ_T0049109.1 MGP_C3HHeJ_G0024058.1 mouse_genomes_project 18 35678822 35683483 + MGP_C3HHeJ_P0049109 Pcdhb17 protein_coding protein_coding MGP_C3HHeJ_T0010170.1 MGP_C3HHeJ_G0008303.1 mouse_genomes_project 18 55050059 55050244 + Gm25476 miRNA miRNA MGP_C3HHeJ_T0048829.1 MGP_C3HHeJ_G0023940.1 mouse_genomes_project 18 22879598 22926841 - MGP_C3HHeJ_P0048829 Tpgs2 protein_coding protein_coding MGP_C3HHeJ_T0048830.1 MGP_C3HHeJ_G0023940.1 mouse_genomes_project 18 22889960 22927154 - MGP_C3HHeJ_P0048830 Tpgs2 protein_coding protein_coding MGP_C3HHeJ_T0049915.1 MGP_C3HHeJ_G0024339.1 mouse_genomes_project 18 84020530 84030035 + MGP_C3HHeJ_P0049915 Zadh2 protein_coding protein_coding MGP_C3HHeJ_T0010179.1 MGP_C3HHeJ_G0008312.1 mouse_genomes_project 18 60495945 60496058 + Gm25301 miRNA miRNA MGP_C3HHeJ_T0048863.1 MGP_C3HHeJ_G0023955.1 mouse_genomes_project 18 29911965 29918612 - MGP_C3HHeJ_P0048863 Gpr17 protein_coding protein_coding MGP_C3HHeJ_T0099115.1 MGP_C3HHeJ_G0037309.1 mouse_genomes_project 18 30829967 30830074 + Gm26378 snRNA snRNA MGP_C3HHeJ_T0049047.1 MGP_C3HHeJ_G0024018.1 mouse_genomes_project 18 34916320 34917987 - MGP_C3HHeJ_P0049047 Cd14 protein_coding protein_coding MGP_C3HHeJ_T0049636.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67720312 67749332 + MGP_C3HHeJ_P0049636 Rnmt protein_coding protein_coding MGP_C3HHeJ_T0049637.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67720349 67729375 + MGP_C3HHeJ_P0049637 Rnmt protein_coding protein_coding MGP_C3HHeJ_T0049638.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67720355 67735417 + Rnmt protein_coding retained_intron MGP_C3HHeJ_T0049639.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67720357 67746386 + MGP_C3HHeJ_P0049639 Rnmt protein_coding protein_coding MGP_C3HHeJ_T0049640.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67720379 67731640 + MGP_C3HHeJ_P0049640 Rnmt protein_coding protein_coding MGP_C3HHeJ_T0049641.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67724954 67726152 + MGP_C3HHeJ_P0049641 Rnmt protein_coding protein_coding MGP_C3HHeJ_T0049642.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67741970 67743724 + Rnmt protein_coding retained_intron MGP_C3HHeJ_T0049643.1 MGP_C3HHeJ_G0024269.1 mouse_genomes_project 18 67743476 67749331 + Rnmt protein_coding processed_transcript MGP_C3HHeJ_T0048877.1 MGP_C3HHeJ_G0023963.1 mouse_genomes_project 18 30824680 30829082 + MGP_C3HHeJ_P0048877 Tslp protein_coding protein_coding MGP_C3HHeJ_T0049001.1 MGP_C3HHeJ_G0024003.1 mouse_genomes_project 18 33852528 33860028 - MGP_C3HHeJ_P0049001 Tmem173 protein_coding protein_coding MGP_C3HHeJ_T0049605.1 MGP_C3HHeJ_G0024250.1 mouse_genomes_project 18 65353898 65615791 - Ccbe1 protein_coding processed_transcript MGP_C3HHeJ_T0049606.1 MGP_C3HHeJ_G0024250.1 mouse_genomes_project 18 65366369 65616133 - MGP_C3HHeJ_P0049606 Ccbe1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049607.1 MGP_C3HHeJ_G0024250.1 mouse_genomes_project 18 65370474 65616183 - MGP_C3HHeJ_P0049607 Ccbe1 protein_coding protein_coding MGP_C3HHeJ_T0049608.1 MGP_C3HHeJ_G0024250.1 mouse_genomes_project 18 65592693 65628572 - Ccbe1 protein_coding processed_transcript MGP_C3HHeJ_T0003741.1 MGP_C3HHeJ_G0003361.1 mouse_genomes_project 18 35902701 35914504 - Gm37165 antisense antisense MGP_C3HHeJ_T0049139.1 MGP_C3HHeJ_G0024081.1 mouse_genomes_project 18 35947005 36038769 + MGP_C3HHeJ_P0049139 protein_coding protein_coding MGP_C3HHeJ_T0013214.1 MGP_C3HHeJ_G0011318.1 mouse_genomes_project 18 73872648 73873056 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097883.1 MGP_C3HHeJ_G0036095.1 mouse_genomes_project 18 89367186 89370914 - pseudogene pseudogene MGP_C3HHeJ_T0049889.1 MGP_C3HHeJ_G0024333.1 mouse_genomes_project 18 80745743 80765972 - MGP_C3HHeJ_P0049889 Sall3 protein_coding protein_coding MGP_C3HHeJ_T0048953.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649725 33669998 + MGP_C3HHeJ_P0048953 Gm28285 protein_coding protein_coding MGP_C3HHeJ_T0048954.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649729 33676649 + MGP_C3HHeJ_P0048954 Gm28285 protein_coding protein_coding MGP_C3HHeJ_T0048955.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649733 33655798 + Gm28285 protein_coding processed_transcript MGP_C3HHeJ_T0048956.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649733 33669693 + Gm28285 protein_coding processed_transcript MGP_C3HHeJ_T0048957.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649734 33669921 + MGP_C3HHeJ_P0048957 Gm28285 protein_coding protein_coding MGP_C3HHeJ_T0048958.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649743 33679319 + MGP_C3HHeJ_P0048958 Gm28285 protein_coding protein_coding MGP_C3HHeJ_T0048959.1 MGP_C3HHeJ_G0023993.1 mouse_genomes_project 18 33649759 33669663 + Gm28285 protein_coding processed_transcript MGP_C3HHeJ_T0049235.1 MGP_C3HHeJ_G0024104.1 mouse_genomes_project 18 38560307 38561030 + MGP_C3HHeJ_P0049235 2900055J20Rik protein_coding protein_coding MGP_C3HHeJ_T0048599.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2870223 2956293 - MGP_C3HHeJ_P0048599 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048600.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2870581 2987038 - MGP_C3HHeJ_P0048600 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048601.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2870991 2987091 - MGP_C3HHeJ_P0048601 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048602.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2871011 2987229 - MGP_C3HHeJ_P0048602 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048603.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2872226 2987023 - MGP_C3HHeJ_P0048603 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048604.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2872350 2987019 - MGP_C3HHeJ_P0048604 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048605.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2878743 2880346 - Arhgap12 protein_coding retained_intron MGP_C3HHeJ_T0048606.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2885058 2914740 - Arhgap12 protein_coding processed_transcript MGP_C3HHeJ_T0048607.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2893264 2955910 - MGP_C3HHeJ_P0048607 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048608.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2901516 2987101 - Arhgap12 protein_coding processed_transcript MGP_C3HHeJ_T0048609.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2905792 2914589 - Arhgap12 protein_coding processed_transcript MGP_C3HHeJ_T0048610.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2905896 2987086 - MGP_C3HHeJ_P0048610 Arhgap12 protein_coding protein_coding MGP_C3HHeJ_T0048611.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2908290 2987072 - Arhgap12 protein_coding processed_transcript MGP_C3HHeJ_T0048612.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2909660 2987066 - Arhgap12 protein_coding processed_transcript MGP_C3HHeJ_T0048613.1 MGP_C3HHeJ_G0023855.1 mouse_genomes_project 18 2913294 2915742 - Arhgap12 protein_coding retained_intron MGP_C3HHeJ_T0049384.1 MGP_C3HHeJ_G0024170.1 mouse_genomes_project 18 52386049 52449046 - MGP_C3HHeJ_P0049384 Cep120 protein_coding protein_coding MGP_C3HHeJ_T0013173.1 MGP_C3HHeJ_G0011277.1 mouse_genomes_project 18 9447536 9448015 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049732.1 MGP_C3HHeJ_G0024282.1 mouse_genomes_project 18 73128863 73148917 + MGP_C3HHeJ_P0049732 Mex3c protein_coding protein_coding MGP_C3HHeJ_T0048632.1 MGP_C3HHeJ_G0023863.1 mouse_genomes_project 18 4240533 4524881 - MGP_C3HHeJ_P0048632 Mpp7 protein_coding protein_coding MGP_C3HHeJ_T0048633.1 MGP_C3HHeJ_G0023863.1 mouse_genomes_project 18 4243629 4456342 - MGP_C3HHeJ_P0048633 Mpp7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010184.1 MGP_C3HHeJ_G0008317.1 mouse_genomes_project 18 65539640 65539710 - Mir694 miRNA miRNA MGP_C3HHeJ_T0049520.1 MGP_C3HHeJ_G0024225.1 mouse_genomes_project 18 61655840 61701451 - MGP_C3HHeJ_P0049520 Fbxo38 protein_coding protein_coding MGP_C3HHeJ_T0010160.1 MGP_C3HHeJ_G0008293.1 mouse_genomes_project 18 33653453 33653564 + miRNA miRNA MGP_C3HHeJ_T0049104.1 MGP_C3HHeJ_G0024053.1 mouse_genomes_project 18 35632328 35635362 + MGP_C3HHeJ_P0049104 Pcdhb12 protein_coding protein_coding MGP_C3HHeJ_T0100378.1 MGP_C3HHeJ_G0038572.1 mouse_genomes_project 18 35894438 35894529 + Gm24401 snoRNA snoRNA MGP_C3HHeJ_T0049849.1 MGP_C3HHeJ_G0024322.1 mouse_genomes_project 18 79846760 79848347 - MGP_C3HHeJ_P0049849 protein_coding protein_coding MGP_C3HHeJ_T0049406.1 MGP_C3HHeJ_G0024178.1 mouse_genomes_project 18 55631868 55801222 - MGP_C3HHeJ_P0049406 March3 protein_coding protein_coding MGP_C3HHeJ_T0049407.1 MGP_C3HHeJ_G0024178.1 mouse_genomes_project 18 55647362 55685511 - MGP_C3HHeJ_P0049407 March3 protein_coding protein_coding MGP_C3HHeJ_T0049408.1 MGP_C3HHeJ_G0024178.1 mouse_genomes_project 18 55677161 55801189 - March3 protein_coding retained_intron MGP_C3HHeJ_T0010191.1 MGP_C3HHeJ_G0008324.1 mouse_genomes_project 18 80704212 80704282 - Gm25071 miRNA miRNA MGP_C3HHeJ_T0049424.1 MGP_C3HHeJ_G0024188.1 mouse_genomes_project 18 57786361 58011969 + MGP_C3HHeJ_P0049424 Adamts19 protein_coding protein_coding MGP_C3HHeJ_T0049303.1 MGP_C3HHeJ_G0024138.1 mouse_genomes_project 18 44605531 44642456 - MGP_C3HHeJ_P0049303 Trim36 protein_coding protein_coding MGP_C3HHeJ_T0049304.1 MGP_C3HHeJ_G0024138.1 mouse_genomes_project 18 44605531 44657171 - MGP_C3HHeJ_P0049304 Trim36 protein_coding protein_coding MGP_C3HHeJ_T0049492.1 MGP_C3HHeJ_G0024213.1 mouse_genomes_project 18 60388981 60499453 - MGP_C3HHeJ_P0049492 Ppargc1b protein_coding protein_coding MGP_C3HHeJ_T0049493.1 MGP_C3HHeJ_G0024213.1 mouse_genomes_project 18 60389355 60499422 - MGP_C3HHeJ_P0049493 Ppargc1b protein_coding protein_coding MGP_C3HHeJ_T0049494.1 MGP_C3HHeJ_G0024213.1 mouse_genomes_project 18 60487979 60499422 - Ppargc1b protein_coding processed_transcript MGP_C3HHeJ_T0049587.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65084181 65101308 + MGP_C3HHeJ_P0049587 Sec11c protein_coding protein_coding MGP_C3HHeJ_T0049588.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65084182 65101299 + MGP_C3HHeJ_P0049588 Sec11c protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049589.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65084204 65096371 + MGP_C3HHeJ_P0049589 Sec11c protein_coding protein_coding MGP_C3HHeJ_T0049590.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65084235 65101300 + Sec11c protein_coding retained_intron MGP_C3HHeJ_T0049591.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65084934 65096421 + Sec11c protein_coding processed_transcript MGP_C3HHeJ_T0049592.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65090225 65101303 + Sec11c protein_coding processed_transcript MGP_C3HHeJ_T0049593.1 MGP_C3HHeJ_G0024245.1 mouse_genomes_project 18 65097656 65101303 + Sec11c protein_coding processed_transcript MGP_C3HHeJ_T0049362.1 MGP_C3HHeJ_G0024159.1 mouse_genomes_project 18 51003030 51004481 + MGP_C3HHeJ_P0049362 Ftmt protein_coding protein_coding MGP_C3HHeJ_T0049317.1 MGP_C3HHeJ_G0024147.1 mouse_genomes_project 18 45211427 45261490 + MGP_C3HHeJ_P0049317 Ap3s1 protein_coding protein_coding MGP_C3HHeJ_T0049318.1 MGP_C3HHeJ_G0024147.1 mouse_genomes_project 18 45211481 45254468 + MGP_C3HHeJ_P0049318 Ap3s1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049182.1 MGP_C3HHeJ_G0024091.1 mouse_genomes_project 18 36172026 36198720 - MGP_C3HHeJ_P0049182 Arap3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049100.1 MGP_C3HHeJ_G0024050.1 mouse_genomes_project 18 35555835 35557320 + MGP_C3HHeJ_P0049100 Pcdhb8 protein_coding protein_coding MGP_C3HHeJ_T0049101.1 MGP_C3HHeJ_G0024050.1 mouse_genomes_project 18 35555985 35559319 + MGP_C3HHeJ_P0049101 Pcdhb8 protein_coding protein_coding MGP_C3HHeJ_T0049360.1 MGP_C3HHeJ_G0024157.1 mouse_genomes_project 18 49759189 49961010 + MGP_C3HHeJ_P0049360 Prr16 protein_coding protein_coding MGP_C3HHeJ_T0011349.1 MGP_C3HHeJ_G0009482.1 mouse_genomes_project 18 10161990 10162297 + Gm26407 misc_RNA misc_RNA MGP_C3HHeJ_T0097879.1 MGP_C3HHeJ_G0036091.1 mouse_genomes_project 18 7100449 7100962 - pseudogene pseudogene MGP_C3HHeJ_T0010176.1 MGP_C3HHeJ_G0008309.1 mouse_genomes_project 18 60030246 60030306 + Mir7220 miRNA miRNA MGP_C3HHeJ_T0006926.1 MGP_C3HHeJ_G0005689.1 mouse_genomes_project 18 29374156 29382940 + Gm26658 lincRNA lincRNA MGP_C3HHeJ_T0049446.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59653719 59685881 - MGP_C3HHeJ_P0049446 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049447.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59653728 59686118 - MGP_C3HHeJ_P0049447 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049448.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59653736 59691388 - MGP_C3HHeJ_P0049448 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049449.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59653737 59660901 - Synpo protein_coding processed_transcript MGP_C3HHeJ_T0049450.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59660609 59685781 - MGP_C3HHeJ_P0049450 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049451.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59660610 59671705 - MGP_C3HHeJ_P0049451 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049452.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59660612 59709876 - MGP_C3HHeJ_P0049452 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049453.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59664512 59684870 - MGP_C3HHeJ_P0049453 Synpo protein_coding protein_coding MGP_C3HHeJ_T0049454.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59664663 59685807 - Synpo protein_coding processed_transcript MGP_C3HHeJ_T0049455.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59666286 59721745 - Synpo protein_coding processed_transcript MGP_C3HHeJ_T0049456.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59691032 59709829 - Synpo protein_coding processed_transcript MGP_C3HHeJ_T0049457.1 MGP_C3HHeJ_G0024199.1 mouse_genomes_project 18 59707183 59709829 - Synpo protein_coding processed_transcript MGP_C3HHeJ_T0049259.1 MGP_C3HHeJ_G0024118.1 mouse_genomes_project 18 41721031 41840554 - MGP_C3HHeJ_P0049259 Dpysl3 protein_coding protein_coding MGP_C3HHeJ_T0049260.1 MGP_C3HHeJ_G0024118.1 mouse_genomes_project 18 41722774 41724084 - Dpysl3 protein_coding processed_transcript MGP_C3HHeJ_T0049261.1 MGP_C3HHeJ_G0024118.1 mouse_genomes_project 18 41724280 41774432 - MGP_C3HHeJ_P0049261 Dpysl3 protein_coding protein_coding MGP_C3HHeJ_T0049262.1 MGP_C3HHeJ_G0024118.1 mouse_genomes_project 18 41724341 41795000 - MGP_C3HHeJ_P0049262 Dpysl3 protein_coding protein_coding MGP_C3HHeJ_T0049263.1 MGP_C3HHeJ_G0024118.1 mouse_genomes_project 18 41730966 41745341 - MGP_C3HHeJ_P0049263 Dpysl3 protein_coding protein_coding MGP_C3HHeJ_T0049264.1 MGP_C3HHeJ_G0024118.1 mouse_genomes_project 18 41735776 41744936 - MGP_C3HHeJ_P0049264 Dpysl3 protein_coding protein_coding MGP_C3HHeJ_T0013186.1 MGP_C3HHeJ_G0011290.1 mouse_genomes_project 18 28393330 28393705 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049756.1 MGP_C3HHeJ_G0024292.1 mouse_genomes_project 18 73852756 73944090 + MGP_C3HHeJ_P0049756 Cfap53 protein_coding protein_coding MGP_C3HHeJ_T0049757.1 MGP_C3HHeJ_G0024292.1 mouse_genomes_project 18 73852788 73944088 + MGP_C3HHeJ_P0049757 Cfap53 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049758.1 MGP_C3HHeJ_G0024292.1 mouse_genomes_project 18 73930961 73944035 + Cfap53 protein_coding processed_transcript MGP_C3HHeJ_T0048631.1 MGP_C3HHeJ_G0023862.1 mouse_genomes_project 18 3972867 4182468 - MGP_C3HHeJ_P0048631 Armc4 protein_coding protein_coding MGP_C3HHeJ_T0049088.1 MGP_C3HHeJ_G0024040.1 mouse_genomes_project 18 35211551 35358175 + MGP_C3HHeJ_P0049088 Pcdha12 protein_coding protein_coding MGP_C3HHeJ_T0048825.1 MGP_C3HHeJ_G0023936.1 mouse_genomes_project 18 22329367 22365952 + MGP_C3HHeJ_P0048825 Elp2 protein_coding protein_coding MGP_C3HHeJ_T0049075.1 MGP_C3HHeJ_G0024033.1 mouse_genomes_project 18 35162067 35358175 + MGP_C3HHeJ_P0049075 Pcdha6 protein_coding protein_coding MGP_C3HHeJ_T0049076.1 MGP_C3HHeJ_G0024033.1 mouse_genomes_project 18 35162084 35357906 + MGP_C3HHeJ_P0049076 Pcdha6 protein_coding protein_coding MGP_C3HHeJ_T0049077.1 MGP_C3HHeJ_G0024033.1 mouse_genomes_project 18 35162086 35357671 + MGP_C3HHeJ_P0049077 Pcdha6 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013216.1 MGP_C3HHeJ_G0011320.1 mouse_genomes_project 18 79595949 79596945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048857.1 MGP_C3HHeJ_G0023950.1 mouse_genomes_project 18 29753225 29762563 + MGP_C3HHeJ_P0048857 Polr2d protein_coding protein_coding MGP_C3HHeJ_T0098081.1 MGP_C3HHeJ_G0036293.1 mouse_genomes_project 18 17329169 17329267 + Gm24238 rRNA rRNA MGP_C3HHeJ_T0003754.1 MGP_C3HHeJ_G0003372.1 mouse_genomes_project 18 60839546 60841411 + 1500015A07Rik antisense antisense MGP_C3HHeJ_T0003755.1 MGP_C3HHeJ_G0003372.1 mouse_genomes_project 18 60839589 60850313 + 1500015A07Rik antisense antisense MGP_C3HHeJ_T0003756.1 MGP_C3HHeJ_G0003372.1 mouse_genomes_project 18 60848754 60850305 + 1500015A07Rik antisense antisense MGP_C3HHeJ_T0048653.1 MGP_C3HHeJ_G0023871.1 mouse_genomes_project 18 6662146 6662620 - MGP_C3HHeJ_P0048653 Gm17430 protein_coding protein_coding MGP_C3HHeJ_T0048913.1 MGP_C3HHeJ_G0023977.1 mouse_genomes_project 18 32611023 32629722 - MGP_C3HHeJ_P0048913 4933408B17Rik protein_coding protein_coding MGP_C3HHeJ_T0048914.1 MGP_C3HHeJ_G0023977.1 mouse_genomes_project 18 32611122 32629599 - MGP_C3HHeJ_P0048914 4933408B17Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013175.1 MGP_C3HHeJ_G0011279.1 mouse_genomes_project 18 9667964 9668739 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048986.1 MGP_C3HHeJ_G0023997.1 mouse_genomes_project 18 33750291 33752396 - MGP_C3HHeJ_P0048986 Mzb1 protein_coding protein_coding MGP_C3HHeJ_T0048651.1 MGP_C3HHeJ_G0023869.1 mouse_genomes_project 18 6545763 6551022 - MGP_C3HHeJ_P0048651 Cetn1 protein_coding protein_coding MGP_C3HHeJ_T0049852.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968627 79973356 + Gm16286 protein_coding processed_transcript MGP_C3HHeJ_T0049854.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968660 79974595 + MGP_C3HHeJ_P0049854 Gm16286 protein_coding protein_coding MGP_C3HHeJ_T0049855.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968692 79972630 + Gm16286 protein_coding retained_intron MGP_C3HHeJ_T0049856.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968708 79969639 + Gm16286 protein_coding retained_intron MGP_C3HHeJ_T0049858.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968729 79974586 + MGP_C3HHeJ_P0049858 Gm16286 protein_coding protein_coding MGP_C3HHeJ_T0049860.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968757 79974604 + MGP_C3HHeJ_P0049860 Gm16286 protein_coding protein_coding MGP_C3HHeJ_T0049861.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968775 79969547 + Gm16286 protein_coding retained_intron MGP_C3HHeJ_T0049862.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79968780 79969639 + Gm16286 protein_coding retained_intron MGP_C3HHeJ_T0049863.1 MGP_C3HHeJ_G0024325.1 mouse_genomes_project 18 79969122 79973350 + Gm16286 protein_coding processed_transcript MGP_C3HHeJ_T0049940.1 MGP_C3HHeJ_G0024348.1 mouse_genomes_project 18 86682962 86690136 + MGP_C3HHeJ_P0049940 Cbln2 protein_coding protein_coding MGP_C3HHeJ_T0049941.1 MGP_C3HHeJ_G0024348.1 mouse_genomes_project 18 86683372 86689442 + MGP_C3HHeJ_P0049941 Cbln2 protein_coding protein_coding MGP_C3HHeJ_T0049942.1 MGP_C3HHeJ_G0024348.1 mouse_genomes_project 18 86683917 86690134 + MGP_C3HHeJ_P0049942 Cbln2 protein_coding protein_coding MGP_C3HHeJ_T0049943.1 MGP_C3HHeJ_G0024348.1 mouse_genomes_project 18 86684900 86690136 + MGP_C3HHeJ_P0049943 Cbln2 protein_coding protein_coding MGP_C3HHeJ_T0048951.1 MGP_C3HHeJ_G0023991.1 mouse_genomes_project 18 33345929 33529781 - MGP_C3HHeJ_P0048951 Sil1 protein_coding protein_coding MGP_C3HHeJ_T0048851.1 MGP_C3HHeJ_G0023945.1 mouse_genomes_project 18 29371646 29381256 - MGP_C3HHeJ_P0048851 Syt4 protein_coding protein_coding MGP_C3HHeJ_T0048758.1 MGP_C3HHeJ_G0023909.1 mouse_genomes_project 18 17744783 17894462 + MGP_C3HHeJ_P0048758 Dsg1a protein_coding protein_coding MGP_C3HHeJ_T0048905.1 MGP_C3HHeJ_G0023973.1 mouse_genomes_project 18 32432838 32465472 + MGP_C3HHeJ_P0048905 Pkd2l2 protein_coding protein_coding MGP_C3HHeJ_T0048906.1 MGP_C3HHeJ_G0023973.1 mouse_genomes_project 18 32432838 32466465 + MGP_C3HHeJ_P0048906 Pkd2l2 protein_coding protein_coding MGP_C3HHeJ_T0049480.1 MGP_C3HHeJ_G0024208.1 mouse_genomes_project 18 60123257 60165078 + MGP_C3HHeJ_P0049480 Pdgfrb protein_coding protein_coding MGP_C3HHeJ_T0049481.1 MGP_C3HHeJ_G0024208.1 mouse_genomes_project 18 60123307 60165073 + MGP_C3HHeJ_P0049481 Pdgfrb protein_coding protein_coding MGP_C3HHeJ_T0049482.1 MGP_C3HHeJ_G0024208.1 mouse_genomes_project 18 60123481 60165081 + MGP_C3HHeJ_P0049482 Pdgfrb protein_coding unknown_likely_coding MGP_C3HHeJ_T0048677.1 MGP_C3HHeJ_G0023879.1 mouse_genomes_project 18 7707255 7803976 + MGP_C3HHeJ_P0048677 Mib1 protein_coding protein_coding MGP_C3HHeJ_T0048678.1 MGP_C3HHeJ_G0023879.1 mouse_genomes_project 18 7707362 7797571 + MGP_C3HHeJ_P0048678 Mib1 protein_coding protein_coding MGP_C3HHeJ_T0048679.1 MGP_C3HHeJ_G0023879.1 mouse_genomes_project 18 7707451 7737374 + Mib1 protein_coding retained_intron MGP_C3HHeJ_T0048680.1 MGP_C3HHeJ_G0023879.1 mouse_genomes_project 18 7746206 7804102 + MGP_C3HHeJ_P0048680 Mib1 protein_coding protein_coding MGP_C3HHeJ_T0048681.1 MGP_C3HHeJ_G0023879.1 mouse_genomes_project 18 7783762 7803026 + MGP_C3HHeJ_P0048681 Mib1 protein_coding protein_coding MGP_C3HHeJ_T0010157.1 MGP_C3HHeJ_G0008290.1 mouse_genomes_project 18 22152208 22152269 - Mir187 miRNA miRNA MGP_C3HHeJ_T0049387.1 MGP_C3HHeJ_G0024173.1 mouse_genomes_project 18 55271116 55351896 + MGP_C3HHeJ_P0049387 Gramd3 protein_coding protein_coding MGP_C3HHeJ_T0000982.1 MGP_C3HHeJ_G0000919.1 mouse_genomes_project 18 84304312 84307790 - TEC TEC MGP_C3HHeJ_T0100381.1 MGP_C3HHeJ_G0038575.1 mouse_genomes_project 18 53840044 53840137 - Gm24183 snoRNA snoRNA MGP_C3HHeJ_T0049599.1 MGP_C3HHeJ_G0024249.1 mouse_genomes_project 18 65284485 65307060 - MGP_C3HHeJ_P0049599 Lman1 protein_coding protein_coding MGP_C3HHeJ_T0049600.1 MGP_C3HHeJ_G0024249.1 mouse_genomes_project 18 65286927 65307044 - MGP_C3HHeJ_P0049600 Lman1 protein_coding protein_coding MGP_C3HHeJ_T0049601.1 MGP_C3HHeJ_G0024249.1 mouse_genomes_project 18 65292504 65298379 - Lman1 protein_coding processed_transcript MGP_C3HHeJ_T0049602.1 MGP_C3HHeJ_G0024249.1 mouse_genomes_project 18 65294627 65297136 - Lman1 protein_coding retained_intron MGP_C3HHeJ_T0049603.1 MGP_C3HHeJ_G0024249.1 mouse_genomes_project 18 65296613 65329531 - MGP_C3HHeJ_P0049603 Lman1 protein_coding protein_coding MGP_C3HHeJ_T0049604.1 MGP_C3HHeJ_G0024249.1 mouse_genomes_project 18 65297066 65324179 - Lman1 protein_coding processed_transcript MGP_C3HHeJ_T0006937.1 MGP_C3HHeJ_G0005698.1 mouse_genomes_project 18 32845435 32851944 - Gm26538 lincRNA lincRNA MGP_C3HHeJ_T0048869.1 MGP_C3HHeJ_G0023960.1 mouse_genomes_project 18 30222117 30253177 + MGP_C3HHeJ_P0048869 Ercc3 protein_coding protein_coding MGP_C3HHeJ_T0048870.1 MGP_C3HHeJ_G0023960.1 mouse_genomes_project 18 30222171 30253177 + Ercc3 protein_coding retained_intron MGP_C3HHeJ_T0048871.1 MGP_C3HHeJ_G0023960.1 mouse_genomes_project 18 30240292 30253117 + Ercc3 protein_coding processed_transcript MGP_C3HHeJ_T0100386.1 MGP_C3HHeJ_G0038580.1 mouse_genomes_project 18 66849150 66849284 + Gm24900 snoRNA snoRNA MGP_C3HHeJ_T0049118.1 MGP_C3HHeJ_G0024066.1 mouse_genomes_project 18 35848457 36038769 + MGP_C3HHeJ_P0049118 Pcdhga1 protein_coding protein_coding MGP_C3HHeJ_T0049119.1 MGP_C3HHeJ_G0024066.1 mouse_genomes_project 18 35848457 35851704 + MGP_C3HHeJ_P0049119 Pcdhga1 protein_coding protein_coding MGP_C3HHeJ_T0049236.1 MGP_C3HHeJ_G0024105.1 mouse_genomes_project 18 38561705 38855451 + MGP_C3HHeJ_P0049236 Kctd16 protein_coding protein_coding MGP_C3HHeJ_T0049620.1 MGP_C3HHeJ_G0024260.1 mouse_genomes_project 18 66874810 67007569 - MGP_C3HHeJ_P0049620 Spire1 protein_coding protein_coding MGP_C3HHeJ_T0049621.1 MGP_C3HHeJ_G0024260.1 mouse_genomes_project 18 66874816 66947134 - MGP_C3HHeJ_P0049621 Spire1 protein_coding protein_coding MGP_C3HHeJ_T0049622.1 MGP_C3HHeJ_G0024260.1 mouse_genomes_project 18 66874816 66943002 - MGP_C3HHeJ_P0049622 Spire1 protein_coding protein_coding MGP_C3HHeJ_T0048652.1 MGP_C3HHeJ_G0023870.1 mouse_genomes_project 18 6642771 6820764 + MGP_C3HHeJ_P0048652 Colec12 protein_coding protein_coding MGP_C3HHeJ_T0048858.1 MGP_C3HHeJ_G0023951.1 mouse_genomes_project 18 29771410 29876906 + MGP_C3HHeJ_P0048858 Wdr33 protein_coding protein_coding MGP_C3HHeJ_T0048859.1 MGP_C3HHeJ_G0023951.1 mouse_genomes_project 18 29771410 29809309 + MGP_C3HHeJ_P0048859 Wdr33 protein_coding protein_coding MGP_C3HHeJ_T0010147.1 MGP_C3HHeJ_G0008280.1 mouse_genomes_project 18 2474601 2474700 + Gm22709 miRNA miRNA MGP_C3HHeJ_T0013181.1 MGP_C3HHeJ_G0011285.1 mouse_genomes_project 18 18947992 18948292 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049016.1 MGP_C3HHeJ_G0024009.1 mouse_genomes_project 18 34523794 34544801 + MGP_C3HHeJ_P0049016 Cystm1 protein_coding protein_coding MGP_C3HHeJ_T0049017.1 MGP_C3HHeJ_G0024009.1 mouse_genomes_project 18 34526778 34581787 + MGP_C3HHeJ_P0049017 Cystm1 protein_coding protein_coding MGP_C3HHeJ_T0049018.1 MGP_C3HHeJ_G0024009.1 mouse_genomes_project 18 34526844 34546336 + Cystm1 protein_coding retained_intron MGP_C3HHeJ_T0049019.1 MGP_C3HHeJ_G0024009.1 mouse_genomes_project 18 34526855 34572065 + MGP_C3HHeJ_P0049019 Cystm1 protein_coding protein_coding MGP_C3HHeJ_T0049020.1 MGP_C3HHeJ_G0024009.1 mouse_genomes_project 18 34543861 34581347 + MGP_C3HHeJ_P0049020 Cystm1 protein_coding protein_coding MGP_C3HHeJ_T0049243.1 MGP_C3HHeJ_G0024109.1 mouse_genomes_project 18 40519459 40519753 + MGP_C3HHeJ_P0049243 Gm5689 protein_coding protein_coding MGP_C3HHeJ_T0010149.1 MGP_C3HHeJ_G0008282.1 mouse_genomes_project 18 5620400 5620504 - Gm26119 miRNA miRNA MGP_C3HHeJ_T0010173.1 MGP_C3HHeJ_G0008306.1 mouse_genomes_project 18 58555444 58555550 + Mir6355 miRNA miRNA MGP_C3HHeJ_T0098276.1 MGP_C3HHeJ_G0036488.1 mouse_genomes_project 18 74371670 74371749 - Scarna17 scaRNA scaRNA MGP_C3HHeJ_T0048738.1 MGP_C3HHeJ_G0023897.1 mouse_genomes_project 18 11976547 12035261 + MGP_C3HHeJ_P0048738 Psma8 protein_coding protein_coding MGP_C3HHeJ_T0013201.1 MGP_C3HHeJ_G0011305.1 mouse_genomes_project 18 44924306 44924882 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049953.1 MGP_C3HHeJ_G0024353.1 mouse_genomes_project 18 90630596 90665433 + MGP_C3HHeJ_P0049953 Tmx3 protein_coding protein_coding MGP_C3HHeJ_T0098085.1 MGP_C3HHeJ_G0036297.1 mouse_genomes_project 18 36570170 36570267 + Gm24690 rRNA rRNA MGP_C3HHeJ_T0049199.1 MGP_C3HHeJ_G0024098.1 mouse_genomes_project 18 36826424 36841430 - MGP_C3HHeJ_P0049199 Spry4 protein_coding protein_coding MGP_C3HHeJ_T0049841.1 MGP_C3HHeJ_G0024317.1 mouse_genomes_project 18 77711831 77725599 - MGP_C3HHeJ_P0049841 Siglec15 protein_coding protein_coding MGP_C3HHeJ_T0048649.1 MGP_C3HHeJ_G0023867.1 mouse_genomes_project 18 6204200 6208424 - MGP_C3HHeJ_P0048649 Gjd4 protein_coding protein_coding MGP_C3HHeJ_T0049127.1 MGP_C3HHeJ_G0024073.1 mouse_genomes_project 18 35895498 36038769 + MGP_C3HHeJ_P0049127 Pcdhga6 protein_coding protein_coding MGP_C3HHeJ_T0098088.1 MGP_C3HHeJ_G0036300.1 mouse_genomes_project 18 68608381 68608515 - Gm23536 rRNA rRNA MGP_C3HHeJ_T0049081.1 MGP_C3HHeJ_G0024037.1 mouse_genomes_project 18 35189301 35358175 + MGP_C3HHeJ_P0049081 Pcdha9 protein_coding protein_coding MGP_C3HHeJ_T0049528.1 MGP_C3HHeJ_G0024230.1 mouse_genomes_project 18 62099015 62132138 + MGP_C3HHeJ_P0049528 Apcdd1 protein_coding protein_coding MGP_C3HHeJ_T0049529.1 MGP_C3HHeJ_G0024230.1 mouse_genomes_project 18 62099017 62131407 + MGP_C3HHeJ_P0049529 Apcdd1 protein_coding protein_coding MGP_C3HHeJ_T0049818.1 MGP_C3HHeJ_G0024309.1 mouse_genomes_project 18 76830211 76909922 + MGP_C3HHeJ_P0049818 St8sia5 protein_coding protein_coding MGP_C3HHeJ_T0049819.1 MGP_C3HHeJ_G0024309.1 mouse_genomes_project 18 76830337 76909792 + MGP_C3HHeJ_P0049819 St8sia5 protein_coding protein_coding MGP_C3HHeJ_T0049470.1 MGP_C3HHeJ_G0024204.1 mouse_genomes_project 18 59986296 59993078 + MGP_C3HHeJ_P0049470 Arsi protein_coding protein_coding MGP_C3HHeJ_T0048862.1 MGP_C3HHeJ_G0023954.1 mouse_genomes_project 18 29900484 29927614 + MGP_C3HHeJ_P0048862 Lims2 protein_coding protein_coding MGP_C3HHeJ_T0048864.1 MGP_C3HHeJ_G0023954.1 mouse_genomes_project 18 29923086 29926985 + MGP_C3HHeJ_P0048864 Lims2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049322.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45730733 45776339 - MGP_C3HHeJ_P0049322 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049323.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45740423 45865070 - MGP_C3HHeJ_P0049323 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049324.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45740424 45865108 - MGP_C3HHeJ_P0049324 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049325.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45742608 45864686 - MGP_C3HHeJ_P0049325 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049326.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45742610 45864688 - MGP_C3HHeJ_P0049326 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049327.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45743544 45829339 - MGP_C3HHeJ_P0049327 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049328.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45770785 45865108 - Sema6a protein_coding retained_intron MGP_C3HHeJ_T0049329.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45770800 45865110 - Sema6a protein_coding retained_intron MGP_C3HHeJ_T0049330.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45785717 45829317 - MGP_C3HHeJ_P0049330 Sema6a protein_coding protein_coding MGP_C3HHeJ_T0049331.1 MGP_C3HHeJ_G0024150.1 mouse_genomes_project 18 45797498 45864508 - Sema6a protein_coding retained_intron MGP_C3HHeJ_T0049880.1 MGP_C3HHeJ_G0024330.1 mouse_genomes_project 18 80183603 80245338 - MGP_C3HHeJ_P0049880 Ctdp1 protein_coding protein_coding MGP_C3HHeJ_T0049881.1 MGP_C3HHeJ_G0024330.1 mouse_genomes_project 18 80183609 80216504 - MGP_C3HHeJ_P0049881 Ctdp1 protein_coding protein_coding MGP_C3HHeJ_T0049882.1 MGP_C3HHeJ_G0024330.1 mouse_genomes_project 18 80184380 80216433 - Ctdp1 protein_coding processed_transcript MGP_C3HHeJ_T0048566.1 MGP_C3HHeJ_G0023849.1 mouse_genomes_project 18 1172469 1194067 - MGP_C3HHeJ_P0048566 Map3k8 protein_coding protein_coding MGP_C3HHeJ_T0048567.1 MGP_C3HHeJ_G0023849.1 mouse_genomes_project 18 1172482 1194071 - MGP_C3HHeJ_P0048567 Map3k8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048568.1 MGP_C3HHeJ_G0023849.1 mouse_genomes_project 18 1172483 1177438 - Map3k8 protein_coding processed_transcript MGP_C3HHeJ_T0048569.1 MGP_C3HHeJ_G0023849.1 mouse_genomes_project 18 1174987 1176191 - Map3k8 protein_coding retained_intron MGP_C3HHeJ_T0048570.1 MGP_C3HHeJ_G0023849.1 mouse_genomes_project 18 1188599 1194129 - Map3k8 protein_coding retained_intron MGP_C3HHeJ_T0049814.1 MGP_C3HHeJ_G0024307.1 mouse_genomes_project 18 76705998 76798421 + MGP_C3HHeJ_P0049814 Pias2 protein_coding protein_coding MGP_C3HHeJ_T0049815.1 MGP_C3HHeJ_G0024307.1 mouse_genomes_project 18 76706350 76798421 + MGP_C3HHeJ_P0049815 Pias2 protein_coding protein_coding MGP_C3HHeJ_T0049816.1 MGP_C3HHeJ_G0024307.1 mouse_genomes_project 18 76706350 76789652 + MGP_C3HHeJ_P0049816 Pias2 protein_coding protein_coding MGP_C3HHeJ_T0048937.1 MGP_C3HHeJ_G0023983.1 mouse_genomes_project 18 32805818 32820664 + MGP_C3HHeJ_P0048937 Fam53c protein_coding protein_coding MGP_C3HHeJ_T0048938.1 MGP_C3HHeJ_G0023983.1 mouse_genomes_project 18 32806468 32820642 + MGP_C3HHeJ_P0048938 Fam53c protein_coding protein_coding MGP_C3HHeJ_T0048827.1 MGP_C3HHeJ_G0023938.1 mouse_genomes_project 18 22437585 22437894 - MGP_C3HHeJ_P0048827 Gm9955 protein_coding protein_coding MGP_C3HHeJ_T0049252.1 MGP_C3HHeJ_G0024116.1 mouse_genomes_project 18 41013819 41280254 - Ppp2r2b protein_coding processed_transcript MGP_C3HHeJ_T0049253.1 MGP_C3HHeJ_G0024116.1 mouse_genomes_project 18 41022289 41280045 - MGP_C3HHeJ_P0049253 Ppp2r2b protein_coding protein_coding MGP_C3HHeJ_T0049254.1 MGP_C3HHeJ_G0024116.1 mouse_genomes_project 18 41022289 41439839 - MGP_C3HHeJ_P0049254 Ppp2r2b protein_coding protein_coding MGP_C3HHeJ_T0049255.1 MGP_C3HHeJ_G0024116.1 mouse_genomes_project 18 41022314 41280394 - MGP_C3HHeJ_P0049255 Ppp2r2b protein_coding protein_coding MGP_C3HHeJ_T0049256.1 MGP_C3HHeJ_G0024116.1 mouse_genomes_project 18 41118471 41322954 - Ppp2r2b protein_coding processed_transcript MGP_C3HHeJ_T0049257.1 MGP_C3HHeJ_G0024116.1 mouse_genomes_project 18 41139029 41279566 - Ppp2r2b protein_coding processed_transcript MGP_C3HHeJ_T0011360.1 MGP_C3HHeJ_G0009493.1 mouse_genomes_project 18 36834523 36834642 + Gm27804 misc_RNA misc_RNA MGP_C3HHeJ_T0003750.1 MGP_C3HHeJ_G0003369.1 mouse_genomes_project 18 44119736 44334280 - antisense antisense MGP_C3HHeJ_T0003751.1 MGP_C3HHeJ_G0003369.1 mouse_genomes_project 18 44121379 44296366 - antisense antisense MGP_C3HHeJ_T0013199.1 MGP_C3HHeJ_G0011303.1 mouse_genomes_project 18 43520407 43521397 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0010187.1 MGP_C3HHeJ_G0008320.1 mouse_genomes_project 18 68449779 68449854 - Mir145b miRNA miRNA MGP_C3HHeJ_T0010163.1 MGP_C3HHeJ_G0008296.1 mouse_genomes_project 18 36051476 36051532 - Mir6979 miRNA miRNA MGP_C3HHeJ_T0048704.1 MGP_C3HHeJ_G0023887.1 mouse_genomes_project 18 9410302 9470260 - MGP_C3HHeJ_P0048704 Ankrd29 protein_coding protein_coding MGP_C3HHeJ_T0048705.1 MGP_C3HHeJ_G0023887.1 mouse_genomes_project 18 9410305 9431837 - Ankrd29 protein_coding processed_transcript MGP_C3HHeJ_T0048706.1 MGP_C3HHeJ_G0023887.1 mouse_genomes_project 18 9412546 9470187 - MGP_C3HHeJ_P0048706 Ankrd29 protein_coding protein_coding MGP_C3HHeJ_T0048707.1 MGP_C3HHeJ_G0023887.1 mouse_genomes_project 18 9435906 9470269 - MGP_C3HHeJ_P0048707 Ankrd29 protein_coding protein_coding MGP_C3HHeJ_T0049245.1 MGP_C3HHeJ_G0024111.1 mouse_genomes_project 18 40549129 40616411 - MGP_C3HHeJ_P0049245 Lars protein_coding protein_coding MGP_C3HHeJ_T0098082.1 MGP_C3HHeJ_G0036294.1 mouse_genomes_project 18 22414802 22414917 - n-R5s23 rRNA rRNA MGP_C3HHeJ_T0049483.1 MGP_C3HHeJ_G0024209.1 mouse_genomes_project 18 60187183 60213405 + MGP_C3HHeJ_P0049483 Csf1r protein_coding protein_coding MGP_C3HHeJ_T0049484.1 MGP_C3HHeJ_G0024209.1 mouse_genomes_project 18 60187412 60214420 + MGP_C3HHeJ_P0049484 Csf1r protein_coding protein_coding MGP_C3HHeJ_T0010159.1 MGP_C3HHeJ_G0008292.1 mouse_genomes_project 18 33650888 33650958 + Mir1949 miRNA miRNA MGP_C3HHeJ_T0010165.1 MGP_C3HHeJ_G0008298.1 mouse_genomes_project 18 36189716 36189776 - Mir6980 miRNA miRNA MGP_C3HHeJ_T0010178.1 MGP_C3HHeJ_G0008311.1 mouse_genomes_project 18 60199015 60199079 + Mir6983 miRNA miRNA MGP_C3HHeJ_T0049283.1 MGP_C3HHeJ_G0024132.1 mouse_genomes_project 18 42668056 42675598 + MGP_C3HHeJ_P0049283 Npy6r protein_coding protein_coding MGP_C3HHeJ_T0013185.1 MGP_C3HHeJ_G0011289.1 mouse_genomes_project 18 28358025 28359434 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048940.1 MGP_C3HHeJ_G0023985.1 mouse_genomes_project 18 32889500 32896371 + MGP_C3HHeJ_P0048940 Reep2 protein_coding protein_coding MGP_C3HHeJ_T0048775.1 MGP_C3HHeJ_G0023921.1 mouse_genomes_project 18 19188175 19294767 - MGP_C3HHeJ_P0048775 Klhl14 protein_coding protein_coding MGP_C3HHeJ_T0048776.1 MGP_C3HHeJ_G0023921.1 mouse_genomes_project 18 19188177 19297117 - MGP_C3HHeJ_P0048776 Klhl14 protein_coding protein_coding MGP_C3HHeJ_T0049556.1 MGP_C3HHeJ_G0024237.1 mouse_genomes_project 18 63674994 63708859 - MGP_C3HHeJ_P0049556 Fech protein_coding protein_coding MGP_C3HHeJ_T0017412.1 MGP_C3HHeJ_G0015128.1 mouse_genomes_project 18 56255389 56440033 - 4930511M06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017415.1 MGP_C3HHeJ_G0015128.1 mouse_genomes_project 18 56391234 56438623 - 4930511M06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017419.1 MGP_C3HHeJ_G0015128.1 mouse_genomes_project 18 56431759 56438726 - 4930511M06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017420.1 MGP_C3HHeJ_G0015128.1 mouse_genomes_project 18 56432412 56440227 - 4930511M06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017421.1 MGP_C3HHeJ_G0015128.1 mouse_genomes_project 18 56434609 56440229 - 4930511M06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0048741.1 MGP_C3HHeJ_G0023899.1 mouse_genomes_project 18 12257834 12360894 - MGP_C3HHeJ_P0048741 Kctd1 protein_coding protein_coding MGP_C3HHeJ_T0048742.1 MGP_C3HHeJ_G0023899.1 mouse_genomes_project 18 12257834 12453073 - MGP_C3HHeJ_P0048742 Kctd1 protein_coding protein_coding MGP_C3HHeJ_T0049341.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48578479 48694164 + MGP_C3HHeJ_P0049341 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049342.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48578543 48653766 + Tnfaip8 protein_coding processed_transcript MGP_C3HHeJ_T0049343.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48578581 48696392 + MGP_C3HHeJ_P0049343 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049344.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48578587 48712370 + Tnfaip8 protein_coding processed_transcript MGP_C3HHeJ_T0049345.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48622315 48693957 + MGP_C3HHeJ_P0049345 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049346.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48633801 48694014 + MGP_C3HHeJ_P0049346 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049347.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48633811 48648922 + Tnfaip8 protein_coding processed_transcript MGP_C3HHeJ_T0049348.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48633812 48693849 + MGP_C3HHeJ_P0049348 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049349.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48649234 48649603 + MGP_C3HHeJ_P0049349 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049350.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48654155 48655882 + Tnfaip8 protein_coding retained_intron MGP_C3HHeJ_T0049351.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48654163 48693520 + MGP_C3HHeJ_P0049351 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049352.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48654166 48693633 + MGP_C3HHeJ_P0049352 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0049353.1 MGP_C3HHeJ_G0024153.1 mouse_genomes_project 18 48655748 48694945 + MGP_C3HHeJ_P0049353 Tnfaip8 protein_coding protein_coding MGP_C3HHeJ_T0048865.1 MGP_C3HHeJ_G0023956.1 mouse_genomes_project 18 29928228 30008547 - MGP_C3HHeJ_P0048865 Myo7b protein_coding protein_coding MGP_C3HHeJ_T0006916.1 MGP_C3HHeJ_G0005683.1 mouse_genomes_project 18 2017563 2020415 - Gm26682 lincRNA lincRNA MGP_C3HHeJ_T0006935.1 MGP_C3HHeJ_G0005697.1 mouse_genomes_project 18 32798492 32803325 + 2010110K18Rik lincRNA lincRNA MGP_C3HHeJ_T0006936.1 MGP_C3HHeJ_G0005697.1 mouse_genomes_project 18 32798595 32805599 + 2010110K18Rik lincRNA lincRNA MGP_C3HHeJ_T0049825.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77117599 77227101 - MGP_C3HHeJ_P0049825 Rnf165 protein_coding protein_coding MGP_C3HHeJ_T0049826.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77124819 77152211 - MGP_C3HHeJ_P0049826 Rnf165 protein_coding protein_coding MGP_C3HHeJ_T0049827.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77125382 77130104 - Rnf165 protein_coding retained_intron MGP_C3HHeJ_T0049828.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77129692 77227015 - MGP_C3HHeJ_P0049828 Rnf165 protein_coding protein_coding MGP_C3HHeJ_T0049829.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77131284 77167245 - Rnf165 protein_coding processed_transcript MGP_C3HHeJ_T0049830.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77224069 77226584 - Rnf165 protein_coding retained_intron MGP_C3HHeJ_T0049831.1 MGP_C3HHeJ_G0024311.1 mouse_genomes_project 18 77225106 77227070 - MGP_C3HHeJ_P0049831 Rnf165 protein_coding protein_coding MGP_C3HHeJ_T0049267.1 MGP_C3HHeJ_G0024121.1 mouse_genomes_project 18 42133069 42144077 - MGP_C3HHeJ_P0049267 Spink1 protein_coding protein_coding MGP_C3HHeJ_T0049143.1 MGP_C3HHeJ_G0024084.1 mouse_genomes_project 18 36001923 36005303 + Pcdhgc3 protein_coding retained_intron MGP_C3HHeJ_T0049144.1 MGP_C3HHeJ_G0024084.1 mouse_genomes_project 18 36001969 36038769 + MGP_C3HHeJ_P0049144 Pcdhgc3 protein_coding protein_coding MGP_C3HHeJ_T0049145.1 MGP_C3HHeJ_G0024084.1 mouse_genomes_project 18 36001975 36038769 + MGP_C3HHeJ_P0049145 Pcdhgc3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049839.1 MGP_C3HHeJ_G0024315.1 mouse_genomes_project 18 77493740 77585418 + MGP_C3HHeJ_P0049839 Pstpip2 protein_coding protein_coding MGP_C3HHeJ_T0049644.1 MGP_C3HHeJ_G0024270.1 mouse_genomes_project 18 67762883 67764992 + MGP_C3HHeJ_P0049644 Mc5r protein_coding protein_coding MGP_C3HHeJ_T0003739.1 MGP_C3HHeJ_G0003359.1 mouse_genomes_project 18 35630119 35634255 - Gm37446 antisense antisense MGP_C3HHeJ_T0049850.1 MGP_C3HHeJ_G0024323.1 mouse_genomes_project 18 79885872 79911035 - MGP_C3HHeJ_P0049850 Adnp2 protein_coding protein_coding MGP_C3HHeJ_T0013189.1 MGP_C3HHeJ_G0011293.1 mouse_genomes_project 18 34791293 34793317 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100372.1 MGP_C3HHeJ_G0038566.1 mouse_genomes_project 18 31792215 31792347 + Gm23639 snoRNA snoRNA MGP_C3HHeJ_T0048557.1 MGP_C3HHeJ_G0023846.1 mouse_genomes_project 18 186517 251690 + MGP_C3HHeJ_P0048557 Cul2 protein_coding protein_coding MGP_C3HHeJ_T0048558.1 MGP_C3HHeJ_G0023846.1 mouse_genomes_project 18 186754 250701 + MGP_C3HHeJ_P0048558 Cul2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048559.1 MGP_C3HHeJ_G0023846.1 mouse_genomes_project 18 186761 251693 + MGP_C3HHeJ_P0048559 Cul2 protein_coding protein_coding MGP_C3HHeJ_T0048560.1 MGP_C3HHeJ_G0023846.1 mouse_genomes_project 18 186786 246847 + MGP_C3HHeJ_P0048560 Cul2 protein_coding protein_coding MGP_C3HHeJ_T0048561.1 MGP_C3HHeJ_G0023846.1 mouse_genomes_project 18 239765 242564 + Cul2 protein_coding processed_transcript MGP_C3HHeJ_T0048562.1 MGP_C3HHeJ_G0023846.1 mouse_genomes_project 18 249199 250329 + Cul2 protein_coding processed_transcript MGP_C3HHeJ_T0048949.1 MGP_C3HHeJ_G0023989.1 mouse_genomes_project 18 33188751 33333515 + MGP_C3HHeJ_P0048949 Ctnna1 protein_coding protein_coding MGP_C3HHeJ_T0006917.1 MGP_C3HHeJ_G0005684.1 mouse_genomes_project 18 7688243 7692986 + 4930563E18Rik lincRNA lincRNA MGP_C3HHeJ_T0049096.1 MGP_C3HHeJ_G0024047.1 mouse_genomes_project 18 35521726 35525259 + MGP_C3HHeJ_P0049096 Pcdhb5 protein_coding protein_coding MGP_C3HHeJ_T0099126.1 MGP_C3HHeJ_G0037320.1 mouse_genomes_project 18 50826014 50826121 - Gm22259 snRNA snRNA MGP_C3HHeJ_T0048904.1 MGP_C3HHeJ_G0023972.1 mouse_genomes_project 18 32366761 32395207 - MGP_C3HHeJ_P0048904 Reep5 protein_coding protein_coding MGP_C3HHeJ_T0049527.1 MGP_C3HHeJ_G0024229.1 mouse_genomes_project 18 61818602 61819423 + MGP_C3HHeJ_P0049527 Gm17732 protein_coding protein_coding MGP_C3HHeJ_T0000970.1 MGP_C3HHeJ_G0000907.1 mouse_genomes_project 18 5835161 5836753 + TEC TEC MGP_C3HHeJ_T0049002.1 MGP_C3HHeJ_G0024004.1 mouse_genomes_project 18 33893387 33928970 + MGP_C3HHeJ_P0049002 Ube2d2a protein_coding protein_coding MGP_C3HHeJ_T0049003.1 MGP_C3HHeJ_G0024004.1 mouse_genomes_project 18 33893430 33928961 + MGP_C3HHeJ_P0049003 Ube2d2a protein_coding protein_coding MGP_C3HHeJ_T0100388.1 MGP_C3HHeJ_G0038582.1 mouse_genomes_project 18 74618040 74618106 + Snord58b snoRNA snoRNA MGP_C3HHeJ_T0011359.1 MGP_C3HHeJ_G0009492.1 mouse_genomes_project 18 36834316 36834387 + Gm27369 misc_RNA misc_RNA MGP_C3HHeJ_T0000969.1 MGP_C3HHeJ_G0000906.1 mouse_genomes_project 18 2447383 2451047 - TEC TEC MGP_C3HHeJ_T0048689.1 MGP_C3HHeJ_G0023884.1 mouse_genomes_project 18 9284065 9313078 + MGP_C3HHeJ_P0048689 Riok3 protein_coding protein_coding MGP_C3HHeJ_T0006918.1 MGP_C3HHeJ_G0005685.1 mouse_genomes_project 18 8045235 8047632 - 1010001N08Rik lincRNA lincRNA MGP_C3HHeJ_T0006919.1 MGP_C3HHeJ_G0005685.1 mouse_genomes_project 18 8046079 8048708 - 1010001N08Rik lincRNA lincRNA MGP_C3HHeJ_T0048888.1 MGP_C3HHeJ_G0023969.1 mouse_genomes_project 18 31793381 32012749 - MGP_C3HHeJ_P0048888 Epb41l4a protein_coding protein_coding MGP_C3HHeJ_T0003729.1 MGP_C3HHeJ_G0003352.1 mouse_genomes_project 18 19293846 19297547 + 4930426D05Rik antisense antisense MGP_C3HHeJ_T0003730.1 MGP_C3HHeJ_G0003352.1 mouse_genomes_project 18 19293963 19297540 + 4930426D05Rik antisense antisense MGP_C3HHeJ_T0003731.1 MGP_C3HHeJ_G0003352.1 mouse_genomes_project 18 19294958 19297556 + 4930426D05Rik antisense antisense MGP_C3HHeJ_T0003732.1 MGP_C3HHeJ_G0003352.1 mouse_genomes_project 18 19294961 19298504 + 4930426D05Rik antisense antisense MGP_C3HHeJ_T0006915.1 MGP_C3HHeJ_G0005682.1 mouse_genomes_project 18 1647705 1687769 + lincRNA lincRNA MGP_C3HHeJ_T0013179.1 MGP_C3HHeJ_G0011283.1 mouse_genomes_project 18 14220909 14221550 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049630.1 MGP_C3HHeJ_G0024265.1 mouse_genomes_project 18 67183996 67205175 + MGP_C3HHeJ_P0049630 Seh1l protein_coding protein_coding MGP_C3HHeJ_T0049397.1 MGP_C3HHeJ_G0024175.1 mouse_genomes_project 18 55413552 55440175 + MGP_C3HHeJ_P0049397 Phax protein_coding protein_coding MGP_C3HHeJ_T0049398.1 MGP_C3HHeJ_G0024175.1 mouse_genomes_project 18 55413702 55430998 + MGP_C3HHeJ_P0049398 Phax protein_coding protein_coding MGP_C3HHeJ_T0049399.1 MGP_C3HHeJ_G0024175.1 mouse_genomes_project 18 55423591 55440578 + MGP_C3HHeJ_P0049399 Phax protein_coding protein_coding MGP_C3HHeJ_T0013192.1 MGP_C3HHeJ_G0011296.1 mouse_genomes_project 18 36452947 36453501 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0000980.1 MGP_C3HHeJ_G0000917.1 mouse_genomes_project 18 80070871 80072392 - TEC TEC MGP_C3HHeJ_T0049840.1 MGP_C3HHeJ_G0024316.1 mouse_genomes_project 18 77599829 77698002 + MGP_C3HHeJ_P0049840 Epg5 protein_coding protein_coding MGP_C3HHeJ_T0097882.1 MGP_C3HHeJ_G0036094.1 mouse_genomes_project 18 77393245 77394477 + pseudogene pseudogene MGP_C3HHeJ_T0100375.1 MGP_C3HHeJ_G0038569.1 mouse_genomes_project 18 32998161 32998231 - Gm26109 snoRNA snoRNA MGP_C3HHeJ_T0049759.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74034768 74223120 + MGP_C3HHeJ_P0049759 Myo5b protein_coding protein_coding MGP_C3HHeJ_T0049760.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74034796 74107650 + Myo5b protein_coding processed_transcript MGP_C3HHeJ_T0049761.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74036375 74364817 + MGP_C3HHeJ_P0049761 Myo5b protein_coding protein_coding MGP_C3HHeJ_T0049762.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74036443 74267082 + Myo5b protein_coding processed_transcript MGP_C3HHeJ_T0049763.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74036445 74364129 + MGP_C3HHeJ_P0049763 Myo5b protein_coding protein_coding MGP_C3HHeJ_T0049764.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74241110 74251589 + Myo5b protein_coding processed_transcript MGP_C3HHeJ_T0049765.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74313922 74323528 + Myo5b protein_coding processed_transcript MGP_C3HHeJ_T0049766.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74320063 74323521 + MGP_C3HHeJ_P0049766 Myo5b protein_coding protein_coding MGP_C3HHeJ_T0049767.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74321234 74323519 + Myo5b protein_coding retained_intron MGP_C3HHeJ_T0049768.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74322023 74328886 + Myo5b protein_coding processed_transcript MGP_C3HHeJ_T0049769.1 MGP_C3HHeJ_G0024293.1 mouse_genomes_project 18 74340097 74364801 + Myo5b protein_coding retained_intron MGP_C3HHeJ_T0011353.1 MGP_C3HHeJ_G0009486.1 mouse_genomes_project 18 17170258 17170555 + Gm25392 misc_RNA misc_RNA MGP_C3HHeJ_T0049851.1 MGP_C3HHeJ_G0024324.1 mouse_genomes_project 18 79954159 79962553 - MGP_C3HHeJ_P0049851 Rbfa protein_coding protein_coding MGP_C3HHeJ_T0049067.1 MGP_C3HHeJ_G0024028.1 mouse_genomes_project 18 35133697 35358175 + MGP_C3HHeJ_P0049067 Pcdha2 protein_coding protein_coding MGP_C3HHeJ_T0049068.1 MGP_C3HHeJ_G0024028.1 mouse_genomes_project 18 35133716 35357906 + MGP_C3HHeJ_P0049068 Pcdha2 protein_coding protein_coding MGP_C3HHeJ_T0006950.1 MGP_C3HHeJ_G0005708.1 mouse_genomes_project 18 57140758 57152257 + Gm26507 lincRNA lincRNA MGP_C3HHeJ_T0013222.1 MGP_C3HHeJ_G0011326.1 mouse_genomes_project 18 90433467 90433686 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049557.1 MGP_C3HHeJ_G0024238.1 mouse_genomes_project 18 63719409 63736814 - MGP_C3HHeJ_P0049557 Nars protein_coding protein_coding MGP_C3HHeJ_T0049548.1 MGP_C3HHeJ_G0024233.1 mouse_genomes_project 18 62857944 62890750 - MGP_C3HHeJ_P0049548 Txnl1 protein_coding protein_coding MGP_C3HHeJ_T0048654.1 MGP_C3HHeJ_G0023872.1 mouse_genomes_project 18 6898004 6937686 + MGP_C3HHeJ_P0048654 Thoc1 protein_coding protein_coding MGP_C3HHeJ_T0049771.1 MGP_C3HHeJ_G0024295.1 mouse_genomes_project 18 74547592 74570161 - MGP_C3HHeJ_P0049771 Lipg protein_coding protein_coding MGP_C3HHeJ_T0049366.1 MGP_C3HHeJ_G0024162.1 mouse_genomes_project 18 51275224 51299131 + MGP_C3HHeJ_P0049366 Zfp474 protein_coding protein_coding MGP_C3HHeJ_T0100383.1 MGP_C3HHeJ_G0038577.1 mouse_genomes_project 18 57552636 57552767 - Gm23270 snoRNA snoRNA MGP_C3HHeJ_T0017424.1 MGP_C3HHeJ_G0015131.1 mouse_genomes_project 18 66701362 66708080 - B430212C06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017425.1 MGP_C3HHeJ_G0015131.1 mouse_genomes_project 18 66701362 66724045 - B430212C06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017426.1 MGP_C3HHeJ_G0015131.1 mouse_genomes_project 18 66701542 66723525 - B430212C06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017427.1 MGP_C3HHeJ_G0015131.1 mouse_genomes_project 18 66703171 66708259 - B430212C06Rik processed_transcript retained_intron MGP_C3HHeJ_T0017428.1 MGP_C3HHeJ_G0015131.1 mouse_genomes_project 18 66703184 66708319 - B430212C06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0100376.1 MGP_C3HHeJ_G0038570.1 mouse_genomes_project 18 33650813 33650954 + Mir1949 snoRNA snoRNA MGP_C3HHeJ_T0049113.1 MGP_C3HHeJ_G0024062.1 mouse_genomes_project 18 35708963 35713668 + MGP_C3HHeJ_P0049113 Pcdhb21 protein_coding protein_coding MGP_C3HHeJ_T0048634.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775032 4777874 + MGP_C3HHeJ_P0048634 Wac protein_coding protein_coding MGP_C3HHeJ_T0048635.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775059 4834251 + MGP_C3HHeJ_P0048635 Wac protein_coding protein_coding MGP_C3HHeJ_T0048636.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775253 4828893 + MGP_C3HHeJ_P0048636 Wac protein_coding protein_coding MGP_C3HHeJ_T0048637.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775383 4777799 + MGP_C3HHeJ_P0048637 Wac protein_coding protein_coding MGP_C3HHeJ_T0048638.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775384 4837169 + MGP_C3HHeJ_P0048638 Wac protein_coding protein_coding MGP_C3HHeJ_T0048639.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775903 4823188 + MGP_C3HHeJ_P0048639 Wac protein_coding protein_coding MGP_C3HHeJ_T0048640.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4775924 4811726 + MGP_C3HHeJ_P0048640 Wac protein_coding protein_coding MGP_C3HHeJ_T0048641.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4776178 4822995 + MGP_C3HHeJ_P0048641 Wac protein_coding protein_coding MGP_C3HHeJ_T0048642.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4777897 4828400 + MGP_C3HHeJ_P0048642 Wac protein_coding protein_coding MGP_C3HHeJ_T0048643.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4811708 4823195 + MGP_C3HHeJ_P0048643 Wac protein_coding protein_coding MGP_C3HHeJ_T0048644.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4817540 4823291 + Wac protein_coding retained_intron MGP_C3HHeJ_T0048645.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4817558 4825407 + MGP_C3HHeJ_P0048645 Wac protein_coding protein_coding MGP_C3HHeJ_T0048646.1 MGP_C3HHeJ_G0023864.1 mouse_genomes_project 18 4824542 4882042 + MGP_C3HHeJ_P0048646 Wac protein_coding protein_coding MGP_C3HHeJ_T0100390.1 MGP_C3HHeJ_G0038584.1 mouse_genomes_project 18 74618863 74618928 + Gm26202 snoRNA snoRNA MGP_C3HHeJ_T0010148.1 MGP_C3HHeJ_G0008281.1 mouse_genomes_project 18 3364553 3364636 - Mir1893 miRNA miRNA MGP_C3HHeJ_T0013196.1 MGP_C3HHeJ_G0011300.1 mouse_genomes_project 18 37617683 37618034 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006964.1 MGP_C3HHeJ_G0005719.1 mouse_genomes_project 18 81018411 81028232 - 4930594M17Rik lincRNA lincRNA MGP_C3HHeJ_T0000972.1 MGP_C3HHeJ_G0000909.1 mouse_genomes_project 18 42524700 42524873 + TEC TEC MGP_C3HHeJ_T0003743.1 MGP_C3HHeJ_G0003363.1 mouse_genomes_project 18 36025337 36026529 - Gm29994 antisense antisense MGP_C3HHeJ_T0048794.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21438921 21461273 + Mapre2 protein_coding retained_intron MGP_C3HHeJ_T0048795.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21438927 21571816 + MGP_C3HHeJ_P0048795 Mapre2 protein_coding protein_coding MGP_C3HHeJ_T0048796.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21438981 21547005 + MGP_C3HHeJ_P0048796 Mapre2 protein_coding protein_coding MGP_C3HHeJ_T0048797.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21440313 21580646 + MGP_C3HHeJ_P0048797 Mapre2 protein_coding protein_coding MGP_C3HHeJ_T0048798.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21440336 21478231 + Mapre2 protein_coding processed_transcript MGP_C3HHeJ_T0048799.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21484236 21520155 + Mapre2 protein_coding retained_intron MGP_C3HHeJ_T0048800.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21484319 21582144 + MGP_C3HHeJ_P0048800 Mapre2 protein_coding protein_coding MGP_C3HHeJ_T0048801.1 MGP_C3HHeJ_G0023926.1 mouse_genomes_project 18 21484319 21579207 + MGP_C3HHeJ_P0048801 Mapre2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049625.1 MGP_C3HHeJ_G0024263.1 mouse_genomes_project 18 67040532 67053090 + MGP_C3HHeJ_P0049625 Psmg2 protein_coding protein_coding MGP_C3HHeJ_T0048868.1 MGP_C3HHeJ_G0023959.1 mouse_genomes_project 18 30140397 30218569 + MGP_C3HHeJ_P0048868 Map3k2 protein_coding protein_coding MGP_C3HHeJ_T0048752.1 MGP_C3HHeJ_G0023906.1 mouse_genomes_project 18 17505104 17534856 - MGP_C3HHeJ_P0048752 Dsc2 protein_coding protein_coding MGP_C3HHeJ_T0048753.1 MGP_C3HHeJ_G0023906.1 mouse_genomes_project 18 17505104 17534932 - MGP_C3HHeJ_P0048753 Dsc2 protein_coding protein_coding MGP_C3HHeJ_T0048754.1 MGP_C3HHeJ_G0023906.1 mouse_genomes_project 18 17505814 17513537 - MGP_C3HHeJ_P0048754 Dsc2 protein_coding protein_coding MGP_C3HHeJ_T0048755.1 MGP_C3HHeJ_G0023906.1 mouse_genomes_project 18 17505950 17534887 - MGP_C3HHeJ_P0048755 Dsc2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048861.1 MGP_C3HHeJ_G0023953.1 mouse_genomes_project 18 29877011 29879819 - MGP_C3HHeJ_P0048861 Sft2d3 protein_coding protein_coding MGP_C3HHeJ_T0099109.1 MGP_C3HHeJ_G0037303.1 mouse_genomes_project 18 4740051 4740158 + Gm24292 snRNA snRNA MGP_C3HHeJ_T0010151.1 MGP_C3HHeJ_G0008284.1 mouse_genomes_project 18 7330061 7330227 - Gm44409 miRNA miRNA MGP_C3HHeJ_T0006960.1 MGP_C3HHeJ_G0005715.1 mouse_genomes_project 18 73571685 73573875 + D730045A05Rik lincRNA lincRNA MGP_C3HHeJ_T0049437.1 MGP_C3HHeJ_G0024195.1 mouse_genomes_project 18 59528693 59559193 - MGP_C3HHeJ_P0049437 Smim3 protein_coding protein_coding MGP_C3HHeJ_T0010175.1 MGP_C3HHeJ_G0008308.1 mouse_genomes_project 18 59880773 59880861 + Mir5107 miRNA miRNA MGP_C3HHeJ_T0049078.1 MGP_C3HHeJ_G0024034.1 mouse_genomes_project 18 35165009 36030210 + MGP_C3HHeJ_P0049078 Gm37013 protein_coding protein_coding MGP_C3HHeJ_T0003757.1 MGP_C3HHeJ_G0003373.1 mouse_genomes_project 18 63362914 63483290 - St8sia3os antisense antisense MGP_C3HHeJ_T0003758.1 MGP_C3HHeJ_G0003373.1 mouse_genomes_project 18 63406791 63483290 - St8sia3os antisense antisense MGP_C3HHeJ_T0003759.1 MGP_C3HHeJ_G0003373.1 mouse_genomes_project 18 63474878 63483281 - St8sia3os antisense antisense MGP_C3HHeJ_T0003760.1 MGP_C3HHeJ_G0003373.1 mouse_genomes_project 18 63481584 63483267 - St8sia3os antisense antisense MGP_C3HHeJ_T0006961.1 MGP_C3HHeJ_G0005716.1 mouse_genomes_project 18 75161337 75170166 + Gm10532 lincRNA lincRNA MGP_C3HHeJ_T0049951.1 MGP_C3HHeJ_G0024352.1 mouse_genomes_project 18 89374766 89872877 - MGP_C3HHeJ_P0049951 Dok6 protein_coding protein_coding MGP_C3HHeJ_T0049952.1 MGP_C3HHeJ_G0024352.1 mouse_genomes_project 18 89553398 89644216 - Dok6 protein_coding retained_intron MGP_C3HHeJ_T0049741.1 MGP_C3HHeJ_G0024286.1 mouse_genomes_project 18 73411828 73433368 + MGP_C3HHeJ_P0049741 Mro protein_coding protein_coding MGP_C3HHeJ_T0049742.1 MGP_C3HHeJ_G0024286.1 mouse_genomes_project 18 73411830 73433752 + MGP_C3HHeJ_P0049742 Mro protein_coding protein_coding MGP_C3HHeJ_T0049743.1 MGP_C3HHeJ_G0024286.1 mouse_genomes_project 18 73411837 73435937 + Mro protein_coding processed_transcript MGP_C3HHeJ_T0049744.1 MGP_C3HHeJ_G0024286.1 mouse_genomes_project 18 73411845 73433368 + MGP_C3HHeJ_P0049744 Mro protein_coding protein_coding MGP_C3HHeJ_T0049745.1 MGP_C3HHeJ_G0024286.1 mouse_genomes_project 18 73416909 73423498 + Mro protein_coding retained_intron MGP_C3HHeJ_T0049746.1 MGP_C3HHeJ_G0024286.1 mouse_genomes_project 18 73416950 73425114 + MGP_C3HHeJ_P0049746 Mro protein_coding protein_coding MGP_C3HHeJ_T0049308.1 MGP_C3HHeJ_G0024142.1 mouse_genomes_project 18 45025952 45043540 - MGP_C3HHeJ_P0049308 Ticam2 protein_coding protein_coding MGP_C3HHeJ_T0049310.1 MGP_C3HHeJ_G0024142.1 mouse_genomes_project 18 45039213 45043540 - Ticam2 protein_coding retained_intron MGP_C3HHeJ_T0100384.1 MGP_C3HHeJ_G0038578.1 mouse_genomes_project 18 62732108 62732252 + Gm22210 snoRNA snoRNA MGP_C3HHeJ_T0048764.1 MGP_C3HHeJ_G0023913.1 mouse_genomes_project 18 18246734 18255809 + MGP_C3HHeJ_P0048764 Ttr protein_coding protein_coding MGP_C3HHeJ_T0011362.1 MGP_C3HHeJ_G0009495.1 mouse_genomes_project 18 39292723 39292997 + Gm22483 misc_RNA misc_RNA MGP_C3HHeJ_T0048571.1 MGP_C3HHeJ_G0023850.1 mouse_genomes_project 18 1218748 1240487 + MGP_C3HHeJ_P0048571 Mtpap protein_coding protein_coding MGP_C3HHeJ_T0003744.1 MGP_C3HHeJ_G0003364.1 mouse_genomes_project 18 37259211 37259769 - Gm15334 antisense antisense MGP_C3HHeJ_T0013218.1 MGP_C3HHeJ_G0011322.1 mouse_genomes_project 18 89619080 89619405 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003747.1 MGP_C3HHeJ_G0003367.1 mouse_genomes_project 18 41320192 41323614 + 4933407I08Rik antisense antisense MGP_C3HHeJ_T0049011.1 MGP_C3HHeJ_G0024007.1 mouse_genomes_project 18 34164041 34354038 - MGP_C3HHeJ_P0049011 Nrg2 protein_coding protein_coding MGP_C3HHeJ_T0049012.1 MGP_C3HHeJ_G0024007.1 mouse_genomes_project 18 34164041 34354038 - MGP_C3HHeJ_P0049012 Nrg2 protein_coding protein_coding MGP_C3HHeJ_T0049013.1 MGP_C3HHeJ_G0024007.1 mouse_genomes_project 18 34164248 34199740 - MGP_C3HHeJ_P0049013 Nrg2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049014.1 MGP_C3HHeJ_G0024007.1 mouse_genomes_project 18 34173730 34353890 - MGP_C3HHeJ_P0049014 Nrg2 protein_coding protein_coding MGP_C3HHeJ_T0006914.1 MGP_C3HHeJ_G0005681.1 mouse_genomes_project 18 1216825 1223137 - Gm26865 lincRNA lincRNA MGP_C3HHeJ_T0011368.1 MGP_C3HHeJ_G0009501.1 mouse_genomes_project 18 64683956 64684285 + Gm22567 misc_RNA misc_RNA MGP_C3HHeJ_T0049149.1 MGP_C3HHeJ_G0024086.1 mouse_genomes_project 18 36015833 36038769 + MGP_C3HHeJ_P0049149 Pcdhgc5 protein_coding protein_coding MGP_C3HHeJ_T0049150.1 MGP_C3HHeJ_G0024086.1 mouse_genomes_project 18 36015872 36036945 + MGP_C3HHeJ_P0049150 Pcdhgc5 protein_coding protein_coding MGP_C3HHeJ_T0049151.1 MGP_C3HHeJ_G0024086.1 mouse_genomes_project 18 36015886 36037094 + MGP_C3HHeJ_P0049151 Pcdhgc5 protein_coding protein_coding MGP_C3HHeJ_T0049152.1 MGP_C3HHeJ_G0024086.1 mouse_genomes_project 18 36015974 36037058 + Pcdhgc5 protein_coding retained_intron MGP_C3HHeJ_T0049414.1 MGP_C3HHeJ_G0024181.1 mouse_genomes_project 18 56236218 56276518 + MGP_C3HHeJ_P0049414 Prrc1 protein_coding protein_coding MGP_C3HHeJ_T0049565.1 MGP_C3HHeJ_G0024242.1 mouse_genomes_project 18 64687443 64740064 + MGP_C3HHeJ_P0049565 Malt1 protein_coding protein_coding MGP_C3HHeJ_T0049566.1 MGP_C3HHeJ_G0024242.1 mouse_genomes_project 18 64687652 64712992 + MGP_C3HHeJ_P0049566 Malt1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049567.1 MGP_C3HHeJ_G0024242.1 mouse_genomes_project 18 64716037 64737683 + MGP_C3HHeJ_P0049567 Malt1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006944.1 MGP_C3HHeJ_G0005703.1 mouse_genomes_project 18 48090564 48091716 + lincRNA lincRNA MGP_C3HHeJ_T0000978.1 MGP_C3HHeJ_G0000915.1 mouse_genomes_project 18 61061175 61061420 - TEC TEC MGP_C3HHeJ_T0099134.1 MGP_C3HHeJ_G0037328.1 mouse_genomes_project 18 63962384 63962446 + Gm23016 snRNA snRNA MGP_C3HHeJ_T0049791.1 MGP_C3HHeJ_G0024304.1 mouse_genomes_project 18 76570783 76582384 + MGP_C3HHeJ_P0049791 Ier3ip1 protein_coding protein_coding MGP_C3HHeJ_T0049792.1 MGP_C3HHeJ_G0024304.1 mouse_genomes_project 18 76570811 76582384 + Ier3ip1 protein_coding processed_transcript MGP_C3HHeJ_T0049793.1 MGP_C3HHeJ_G0024304.1 mouse_genomes_project 18 76570829 76580536 + Ier3ip1 protein_coding retained_intron MGP_C3HHeJ_T0049795.1 MGP_C3HHeJ_G0024304.1 mouse_genomes_project 18 76580072 76581470 + Ier3ip1 protein_coding retained_intron MGP_C3HHeJ_T0049522.1 MGP_C3HHeJ_G0024227.1 mouse_genomes_project 18 61764593 61905318 - MGP_C3HHeJ_P0049522 Spink13 protein_coding protein_coding MGP_C3HHeJ_T0013204.1 MGP_C3HHeJ_G0011308.1 mouse_genomes_project 18 51126385 51127283 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049465.1 MGP_C3HHeJ_G0024202.1 mouse_genomes_project 18 59861586 59881356 + MGP_C3HHeJ_P0049465 Cd74 protein_coding protein_coding MGP_C3HHeJ_T0049106.1 MGP_C3HHeJ_G0024055.1 mouse_genomes_project 18 35644382 35653085 + MGP_C3HHeJ_P0049106 Pcdhb14 protein_coding protein_coding MGP_C3HHeJ_T0098578.1 MGP_C3HHeJ_G0036774.1 mouse_genomes_project 18 80758308 80767261 - Gm27238 sense_overlapping sense_overlapping MGP_C3HHeJ_T0049099.1 MGP_C3HHeJ_G0024049.1 mouse_genomes_project 18 35542414 35545914 + MGP_C3HHeJ_P0049099 Pcdhb7 protein_coding protein_coding MGP_C3HHeJ_T0049273.1 MGP_C3HHeJ_G0024125.1 mouse_genomes_project 18 42441020 42446398 + MGP_C3HHeJ_P0049273 Spink14 protein_coding protein_coding MGP_C3HHeJ_T0049274.1 MGP_C3HHeJ_G0024125.1 mouse_genomes_project 18 42441845 42446398 + MGP_C3HHeJ_P0049274 Spink14 protein_coding protein_coding MGP_C3HHeJ_T0017389.1 MGP_C3HHeJ_G0015121.1 mouse_genomes_project 18 33649692 33654638 + Snhg4 processed_transcript lincRNA MGP_C3HHeJ_T0017390.1 MGP_C3HHeJ_G0015121.1 mouse_genomes_project 18 33649731 33651086 + Snhg4 processed_transcript retained_intron MGP_C3HHeJ_T0017391.1 MGP_C3HHeJ_G0015121.1 mouse_genomes_project 18 33649733 33653552 + Snhg4 processed_transcript retained_intron MGP_C3HHeJ_T0017392.1 MGP_C3HHeJ_G0015121.1 mouse_genomes_project 18 33649743 33652286 + Snhg4 processed_transcript retained_intron MGP_C3HHeJ_T0017393.1 MGP_C3HHeJ_G0015121.1 mouse_genomes_project 18 33652460 33653718 + Snhg4 processed_transcript retained_intron MGP_C3HHeJ_T0048808.1 MGP_C3HHeJ_G0023931.1 mouse_genomes_project 18 21819905 21837638 - MGP_C3HHeJ_P0048808 Ino80c protein_coding protein_coding MGP_C3HHeJ_T0048809.1 MGP_C3HHeJ_G0023931.1 mouse_genomes_project 18 21819911 21837789 - MGP_C3HHeJ_P0048809 Ino80c protein_coding protein_coding MGP_C3HHeJ_T0048810.1 MGP_C3HHeJ_G0023931.1 mouse_genomes_project 18 21821528 21837672 - MGP_C3HHeJ_P0048810 Ino80c protein_coding protein_coding MGP_C3HHeJ_T0010164.1 MGP_C3HHeJ_G0008297.1 mouse_genomes_project 18 36173360 36173475 - Mir6981 miRNA miRNA MGP_C3HHeJ_T0049268.1 MGP_C3HHeJ_G0024122.1 mouse_genomes_project 18 42174256 42177368 + MGP_C3HHeJ_P0049268 Scgb3a2 protein_coding protein_coding MGP_C3HHeJ_T0049269.1 MGP_C3HHeJ_G0024122.1 mouse_genomes_project 18 42174294 42177368 + MGP_C3HHeJ_P0049269 Scgb3a2 protein_coding protein_coding MGP_C3HHeJ_T0049270.1 MGP_C3HHeJ_G0024122.1 mouse_genomes_project 18 42174294 42177368 + MGP_C3HHeJ_P0049270 Scgb3a2 protein_coding protein_coding MGP_C3HHeJ_T0049750.1 MGP_C3HHeJ_G0024288.1 mouse_genomes_project 18 73624748 73625231 + MGP_C3HHeJ_P0049750 Gm9925 protein_coding protein_coding MGP_C3HHeJ_T0013194.1 MGP_C3HHeJ_G0011298.1 mouse_genomes_project 18 36968018 36968620 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048663.1 MGP_C3HHeJ_G0023875.1 mouse_genomes_project 18 7287373 7477478 + Greb1l protein_coding retained_intron MGP_C3HHeJ_T0048664.1 MGP_C3HHeJ_G0023875.1 mouse_genomes_project 18 7287375 7542653 + MGP_C3HHeJ_P0048664 Greb1l protein_coding protein_coding MGP_C3HHeJ_T0048665.1 MGP_C3HHeJ_G0023875.1 mouse_genomes_project 18 7430018 7516047 + MGP_C3HHeJ_P0048665 Greb1l protein_coding protein_coding MGP_C3HHeJ_T0048666.1 MGP_C3HHeJ_G0023875.1 mouse_genomes_project 18 7486464 7493735 + Greb1l protein_coding retained_intron MGP_C3HHeJ_T0048667.1 MGP_C3HHeJ_G0023875.1 mouse_genomes_project 18 7487772 7532790 + MGP_C3HHeJ_P0048667 Greb1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048668.1 MGP_C3HHeJ_G0023875.1 mouse_genomes_project 18 7532871 7538576 + Greb1l protein_coding processed_transcript MGP_C3HHeJ_T0049105.1 MGP_C3HHeJ_G0024054.1 mouse_genomes_project 18 35639208 35642918 + MGP_C3HHeJ_P0049105 Pcdhb13 protein_coding protein_coding MGP_C3HHeJ_T0049135.1 MGP_C3HHeJ_G0024078.1 mouse_genomes_project 18 35927154 36038766 + MGP_C3HHeJ_P0049135 Pcdhga9 protein_coding protein_coding MGP_C3HHeJ_T0049136.1 MGP_C3HHeJ_G0024078.1 mouse_genomes_project 18 35927587 35930628 + Pcdhga9 protein_coding retained_intron MGP_C3HHeJ_T0011363.1 MGP_C3HHeJ_G0009496.1 mouse_genomes_project 18 40940969 40941125 + Gm27457 misc_RNA misc_RNA MGP_C3HHeJ_T0013202.1 MGP_C3HHeJ_G0011306.1 mouse_genomes_project 18 47157488 47158494 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100389.1 MGP_C3HHeJ_G0038583.1 mouse_genomes_project 18 74618438 74618503 + Gm23301 snoRNA snoRNA MGP_C3HHeJ_T0013209.1 MGP_C3HHeJ_G0011313.1 mouse_genomes_project 18 54617633 54618611 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0097880.1 MGP_C3HHeJ_G0036092.1 mouse_genomes_project 18 59477185 59477828 + pseudogene pseudogene MGP_C3HHeJ_T0049198.1 MGP_C3HHeJ_G0024097.1 mouse_genomes_project 18 36637706 36692455 + MGP_C3HHeJ_P0049198 Ndfip1 protein_coding protein_coding MGP_C3HHeJ_T0013177.1 MGP_C3HHeJ_G0011281.1 mouse_genomes_project 18 10092340 10092980 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048924.1 MGP_C3HHeJ_G0023979.1 mouse_genomes_project 18 32658871 32667479 + MGP_C3HHeJ_P0048924 Kif20a protein_coding protein_coding MGP_C3HHeJ_T0048925.1 MGP_C3HHeJ_G0023979.1 mouse_genomes_project 18 32659280 32667479 + MGP_C3HHeJ_P0048925 Kif20a protein_coding protein_coding MGP_C3HHeJ_T0049845.1 MGP_C3HHeJ_G0024319.1 mouse_genomes_project 18 77821986 77887598 - MGP_C3HHeJ_P0049845 Slc14a2 protein_coding protein_coding MGP_C3HHeJ_T0049846.1 MGP_C3HHeJ_G0024319.1 mouse_genomes_project 18 77860009 77884944 - MGP_C3HHeJ_P0049846 Slc14a2 protein_coding protein_coding MGP_C3HHeJ_T0049754.1 MGP_C3HHeJ_G0024291.1 mouse_genomes_project 18 73837904 73852345 + MGP_C3HHeJ_P0049754 Mbd1 protein_coding protein_coding MGP_C3HHeJ_T0049755.1 MGP_C3HHeJ_G0024291.1 mouse_genomes_project 18 73837911 73847215 + MGP_C3HHeJ_P0049755 Mbd1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099132.1 MGP_C3HHeJ_G0037326.1 mouse_genomes_project 18 62779478 62779571 + Gm24848 snRNA snRNA MGP_C3HHeJ_T0099144.1 MGP_C3HHeJ_G0037338.1 mouse_genomes_project 18 86311692 86311799 + Gm25453 snRNA snRNA MGP_C3HHeJ_T0048650.1 MGP_C3HHeJ_G0023868.1 mouse_genomes_project 18 6240064 6395489 - MGP_C3HHeJ_P0048650 Ccny protein_coding protein_coding MGP_C3HHeJ_T0048992.1 MGP_C3HHeJ_G0024000.1 mouse_genomes_project 18 33776643 33812612 - MGP_C3HHeJ_P0048992 Dnajc18 protein_coding protein_coding MGP_C3HHeJ_T0003763.1 MGP_C3HHeJ_G0003375.1 mouse_genomes_project 18 69431326 69434016 + 4930448D08Rik antisense antisense MGP_C3HHeJ_T0048975.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33698046 33716633 + MGP_C3HHeJ_P0048975 Paip2 protein_coding protein_coding MGP_C3HHeJ_T0048976.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33698053 33715797 + MGP_C3HHeJ_P0048976 Paip2 protein_coding protein_coding MGP_C3HHeJ_T0048977.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33698070 33715966 + MGP_C3HHeJ_P0048977 Paip2 protein_coding protein_coding MGP_C3HHeJ_T0048978.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33698078 33716630 + MGP_C3HHeJ_P0048978 Paip2 protein_coding protein_coding MGP_C3HHeJ_T0048979.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33698666 33715842 + MGP_C3HHeJ_P0048979 Paip2 protein_coding protein_coding MGP_C3HHeJ_T0048980.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33709730 33712872 + Paip2 protein_coding retained_intron MGP_C3HHeJ_T0048981.1 MGP_C3HHeJ_G0023995.1 mouse_genomes_project 18 33710431 33713321 + Paip2 protein_coding retained_intron MGP_C3HHeJ_T0048572.1 MGP_C3HHeJ_G0023851.1 mouse_genomes_project 18 1466001 1512197 + MGP_C3HHeJ_P0048572 9430020K01Rik protein_coding protein_coding MGP_C3HHeJ_T0049107.1 MGP_C3HHeJ_G0024056.1 mouse_genomes_project 18 35667566 35670367 + MGP_C3HHeJ_P0049107 Pcdhb15 protein_coding protein_coding MGP_C3HHeJ_T0010155.1 MGP_C3HHeJ_G0008288.1 mouse_genomes_project 18 8980242 8980320 - Mir1901 miRNA miRNA MGP_C3HHeJ_T0006947.1 MGP_C3HHeJ_G0005706.1 mouse_genomes_project 18 53727291 53733606 + Gm26742 lincRNA lincRNA MGP_C3HHeJ_T0049922.1 MGP_C3HHeJ_G0024341.1 mouse_genomes_project 18 84548381 84587626 - MGP_C3HHeJ_P0049922 Cndp1 protein_coding protein_coding MGP_C3HHeJ_T0049923.1 MGP_C3HHeJ_G0024341.1 mouse_genomes_project 18 84566300 84587588 - Cndp1 protein_coding retained_intron MGP_C3HHeJ_T0049924.1 MGP_C3HHeJ_G0024341.1 mouse_genomes_project 18 84568466 84587488 - Cndp1 protein_coding retained_intron MGP_C3HHeJ_T0049288.1 MGP_C3HHeJ_G0024135.1 mouse_genomes_project 18 42822179 43237514 - MGP_C3HHeJ_P0049288 Mcc protein_coding protein_coding MGP_C3HHeJ_T0049289.1 MGP_C3HHeJ_G0024135.1 mouse_genomes_project 18 42826257 43078321 - MGP_C3HHeJ_P0049289 Mcc protein_coding protein_coding MGP_C3HHeJ_T0049290.1 MGP_C3HHeJ_G0024135.1 mouse_genomes_project 18 42915368 42918032 - Mcc protein_coding retained_intron MGP_C3HHeJ_T0049291.1 MGP_C3HHeJ_G0024135.1 mouse_genomes_project 18 43074621 43078339 - Mcc protein_coding retained_intron MGP_C3HHeJ_T0049292.1 MGP_C3HHeJ_G0024135.1 mouse_genomes_project 18 43131917 43145077 - Mcc protein_coding processed_transcript MGP_C3HHeJ_T0049286.1 MGP_C3HHeJ_G0024134.1 mouse_genomes_project 18 42778357 42793884 + MGP_C3HHeJ_P0049286 Dcp2 protein_coding protein_coding MGP_C3HHeJ_T0049287.1 MGP_C3HHeJ_G0024134.1 mouse_genomes_project 18 42778382 42822089 + MGP_C3HHeJ_P0049287 Dcp2 protein_coding protein_coding MGP_C3HHeJ_T0006946.1 MGP_C3HHeJ_G0005705.1 mouse_genomes_project 18 53145042 53178003 + Redrum lincRNA lincRNA MGP_C3HHeJ_T0049080.1 MGP_C3HHeJ_G0024036.1 mouse_genomes_project 18 35182438 35358175 + MGP_C3HHeJ_P0049080 Pcdha8 protein_coding protein_coding MGP_C3HHeJ_T0013217.1 MGP_C3HHeJ_G0011321.1 mouse_genomes_project 18 84595892 84596654 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0013206.1 MGP_C3HHeJ_G0011310.1 mouse_genomes_project 18 51625324 51626847 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049117.1 MGP_C3HHeJ_G0024065.1 mouse_genomes_project 18 35827140 35830864 - MGP_C3HHeJ_P0049117 Taf7 protein_coding protein_coding MGP_C3HHeJ_T0049523.1 MGP_C3HHeJ_G0024228.1 mouse_genomes_project 18 61799831 61815339 + Spink10 protein_coding processed_transcript MGP_C3HHeJ_T0049524.1 MGP_C3HHeJ_G0024228.1 mouse_genomes_project 18 61803652 61817630 + MGP_C3HHeJ_P0049524 Spink10 protein_coding protein_coding MGP_C3HHeJ_T0049525.1 MGP_C3HHeJ_G0024228.1 mouse_genomes_project 18 61804026 61805926 + Spink10 protein_coding processed_transcript MGP_C3HHeJ_T0049526.1 MGP_C3HHeJ_G0024228.1 mouse_genomes_project 18 61804080 61807046 + Spink10 protein_coding processed_transcript MGP_C3HHeJ_T0098084.1 MGP_C3HHeJ_G0036296.1 mouse_genomes_project 18 32681872 32681991 + n-R5s25 rRNA rRNA MGP_C3HHeJ_T0048939.1 MGP_C3HHeJ_G0023984.1 mouse_genomes_project 18 32823888 32888282 + MGP_C3HHeJ_P0048939 Kdm3b protein_coding protein_coding MGP_C3HHeJ_T0017413.1 MGP_C3HHeJ_G0015129.1 mouse_genomes_project 18 56389692 56419980 - 1700066O22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017414.1 MGP_C3HHeJ_G0015129.1 mouse_genomes_project 18 56391208 56419956 - 1700066O22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017416.1 MGP_C3HHeJ_G0015129.1 mouse_genomes_project 18 56401385 56419967 - 1700066O22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017417.1 MGP_C3HHeJ_G0015129.1 mouse_genomes_project 18 56401396 56419944 - 1700066O22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017418.1 MGP_C3HHeJ_G0015129.1 mouse_genomes_project 18 56416660 56419951 - 1700066O22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0099120.1 MGP_C3HHeJ_G0037314.1 mouse_genomes_project 18 41451496 41451603 - Gm22264 snRNA snRNA MGP_C3HHeJ_T0049128.1 MGP_C3HHeJ_G0024074.1 mouse_genomes_project 18 35903186 36038769 + MGP_C3HHeJ_P0049128 Pcdhga7 protein_coding protein_coding MGP_C3HHeJ_T0049129.1 MGP_C3HHeJ_G0024074.1 mouse_genomes_project 18 35903240 35906339 + MGP_C3HHeJ_P0049129 Pcdhga7 protein_coding protein_coding MGP_C3HHeJ_T0049369.1 MGP_C3HHeJ_G0024164.1 mouse_genomes_project 18 51352916 51354906 + MGP_C3HHeJ_P0049369 Gykl1 protein_coding protein_coding MGP_C3HHeJ_T0048746.1 MGP_C3HHeJ_G0023902.1 mouse_genomes_project 18 13152937 13154760 + MGP_C3HHeJ_P0048746 protein_coding protein_coding MGP_C3HHeJ_T0048854.1 MGP_C3HHeJ_G0023948.1 mouse_genomes_project 18 29587189 29677958 + MGP_C3HHeJ_P0048854 Sap130 protein_coding protein_coding MGP_C3HHeJ_T0048855.1 MGP_C3HHeJ_G0023948.1 mouse_genomes_project 18 29587867 29677961 + MGP_C3HHeJ_P0048855 Sap130 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049611.1 MGP_C3HHeJ_G0024253.1 mouse_genomes_project 18 66457465 66600175 + MGP_C3HHeJ_P0049611 Gnal protein_coding protein_coding MGP_C3HHeJ_T0049612.1 MGP_C3HHeJ_G0024253.1 mouse_genomes_project 18 66505610 66600175 + MGP_C3HHeJ_P0049612 Gnal protein_coding protein_coding MGP_C3HHeJ_T0013211.1 MGP_C3HHeJ_G0011315.1 mouse_genomes_project 18 59237484 59238700 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099139.1 MGP_C3HHeJ_G0037333.1 mouse_genomes_project 18 78350929 78351089 + Gm23895 snRNA snRNA MGP_C3HHeJ_T0013219.1 MGP_C3HHeJ_G0011323.1 mouse_genomes_project 18 89619643 89620102 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049645.1 MGP_C3HHeJ_G0024271.1 mouse_genomes_project 18 67830388 67845165 - MGP_C3HHeJ_P0049645 Mc2r protein_coding protein_coding MGP_C3HHeJ_T0049753.1 MGP_C3HHeJ_G0024290.1 mouse_genomes_project 18 73784839 73790188 + MGP_C3HHeJ_P0049753 Cxxc1 protein_coding protein_coding MGP_C3HHeJ_T0099112.1 MGP_C3HHeJ_G0037306.1 mouse_genomes_project 18 11914382 11914546 - Gm24924 snRNA snRNA MGP_C3HHeJ_T0003748.1 MGP_C3HHeJ_G0003368.1 mouse_genomes_project 18 43077719 43092199 + A930012L18Rik antisense antisense MGP_C3HHeJ_T0003749.1 MGP_C3HHeJ_G0003368.1 mouse_genomes_project 18 43078157 43088501 + A930012L18Rik antisense antisense MGP_C3HHeJ_T0049416.1 MGP_C3HHeJ_G0024183.1 mouse_genomes_project 18 56420007 56621554 + MGP_C3HHeJ_P0049416 1700011I03Rik protein_coding protein_coding MGP_C3HHeJ_T0049417.1 MGP_C3HHeJ_G0024183.1 mouse_genomes_project 18 56420056 56621554 + MGP_C3HHeJ_P0049417 1700011I03Rik protein_coding protein_coding MGP_C3HHeJ_T0049418.1 MGP_C3HHeJ_G0024183.1 mouse_genomes_project 18 56420109 56452900 + MGP_C3HHeJ_P0049418 1700011I03Rik protein_coding protein_coding MGP_C3HHeJ_T0049419.1 MGP_C3HHeJ_G0024183.1 mouse_genomes_project 18 56449113 56621495 + MGP_C3HHeJ_P0049419 1700011I03Rik protein_coding protein_coding MGP_C3HHeJ_T0048867.1 MGP_C3HHeJ_G0023958.1 mouse_genomes_project 18 30092610 30115475 - MGP_C3HHeJ_P0048867 Proc protein_coding protein_coding MGP_C3HHeJ_T0049631.1 MGP_C3HHeJ_G0024266.1 mouse_genomes_project 18 67209817 67298872 + MGP_C3HHeJ_P0049631 Cep192 protein_coding protein_coding MGP_C3HHeJ_T0049632.1 MGP_C3HHeJ_G0024266.1 mouse_genomes_project 18 67212493 67298878 + MGP_C3HHeJ_P0049632 Cep192 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048779.1 MGP_C3HHeJ_G0023923.1 mouse_genomes_project 18 20004728 20187810 + MGP_C3HHeJ_P0048779 Asxl3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048780.1 MGP_C3HHeJ_G0023923.1 mouse_genomes_project 18 20005261 20039402 + Asxl3 protein_coding retained_intron MGP_C3HHeJ_T0048781.1 MGP_C3HHeJ_G0023923.1 mouse_genomes_project 18 20005467 20192488 + MGP_C3HHeJ_P0048781 Asxl3 protein_coding protein_coding MGP_C3HHeJ_T0048782.1 MGP_C3HHeJ_G0023923.1 mouse_genomes_project 18 20005467 20192276 + MGP_C3HHeJ_P0048782 Asxl3 protein_coding protein_coding MGP_C3HHeJ_T0049251.1 MGP_C3HHeJ_G0024115.1 mouse_genomes_project 18 40944782 40946415 - MGP_C3HHeJ_P0049251 Gpr151 protein_coding protein_coding MGP_C3HHeJ_T0049646.1 MGP_C3HHeJ_G0024272.1 mouse_genomes_project 18 68370184 68376274 - MGP_C3HHeJ_P0049646 4930546C10Rik protein_coding protein_coding MGP_C3HHeJ_T0048625.1 MGP_C3HHeJ_G0023860.1 mouse_genomes_project 18 3648830 3673863 + MGP_C3HHeJ_P0048625 Rab18 protein_coding protein_coding MGP_C3HHeJ_T0003738.1 MGP_C3HHeJ_G0003358.1 mouse_genomes_project 18 35342613 35343052 - Gm38097 antisense antisense MGP_C3HHeJ_T0099129.1 MGP_C3HHeJ_G0037323.1 mouse_genomes_project 18 60220638 60220743 - Gm26403 snRNA snRNA MGP_C3HHeJ_T0049023.1 MGP_C3HHeJ_G0024012.1 mouse_genomes_project 18 34705423 34718539 + MGP_C3HHeJ_P0049023 Slc4a9 protein_coding protein_coding MGP_C3HHeJ_T0049024.1 MGP_C3HHeJ_G0024012.1 mouse_genomes_project 18 34705423 34718539 + MGP_C3HHeJ_P0049024 Slc4a9 protein_coding protein_coding MGP_C3HHeJ_T0099123.1 MGP_C3HHeJ_G0037317.1 mouse_genomes_project 18 48147912 48148066 - Gm25440 snRNA snRNA MGP_C3HHeJ_T0011352.1 MGP_C3HHeJ_G0009485.1 mouse_genomes_project 18 14502912 14503144 - Gm24015 misc_RNA misc_RNA MGP_C3HHeJ_T0049805.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76617215 76687330 - MGP_C3HHeJ_P0049805 Katnal2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049806.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76617215 76687373 - MGP_C3HHeJ_P0049806 Katnal2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049807.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76617223 76687330 - MGP_C3HHeJ_P0049807 Katnal2 protein_coding protein_coding MGP_C3HHeJ_T0049808.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76617452 76687311 - MGP_C3HHeJ_P0049808 Katnal2 protein_coding protein_coding MGP_C3HHeJ_T0049809.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76618516 76646879 - Katnal2 protein_coding processed_transcript MGP_C3HHeJ_T0049810.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76633255 76687383 - MGP_C3HHeJ_P0049810 Katnal2 protein_coding protein_coding MGP_C3HHeJ_T0049811.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76642533 76648209 - Katnal2 protein_coding retained_intron MGP_C3HHeJ_T0049812.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76650047 76687374 - MGP_C3HHeJ_P0049812 Katnal2 protein_coding protein_coding MGP_C3HHeJ_T0049813.1 MGP_C3HHeJ_G0024306.1 mouse_genomes_project 18 76650531 76687385 - MGP_C3HHeJ_P0049813 Katnal2 protein_coding protein_coding MGP_C3HHeJ_T0100371.1 MGP_C3HHeJ_G0038565.1 mouse_genomes_project 18 30619698 30619835 - Gm25826 snoRNA snoRNA MGP_C3HHeJ_T0010158.1 MGP_C3HHeJ_G0008291.1 mouse_genomes_project 18 30890443 30890544 - Mir6361 miRNA miRNA MGP_C3HHeJ_T0010188.1 MGP_C3HHeJ_G0008321.1 mouse_genomes_project 18 69989924 69990028 + Mir6357 miRNA miRNA MGP_C3HHeJ_T0049306.1 MGP_C3HHeJ_G0024140.1 mouse_genomes_project 18 44730090 44762255 - MGP_C3HHeJ_P0049306 Ccdc112 protein_coding protein_coding MGP_C3HHeJ_T0049400.1 MGP_C3HHeJ_G0024176.1 mouse_genomes_project 18 55441215 55448532 + MGP_C3HHeJ_P0049400 Tex43 protein_coding protein_coding MGP_C3HHeJ_T0049401.1 MGP_C3HHeJ_G0024176.1 mouse_genomes_project 18 55441244 55446470 + MGP_C3HHeJ_P0049401 Tex43 protein_coding protein_coding MGP_C3HHeJ_T0049402.1 MGP_C3HHeJ_G0024176.1 mouse_genomes_project 18 55441254 55448462 + MGP_C3HHeJ_P0049402 Tex43 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049403.1 MGP_C3HHeJ_G0024176.1 mouse_genomes_project 18 55441291 55448532 + MGP_C3HHeJ_P0049403 Tex43 protein_coding protein_coding MGP_C3HHeJ_T0048802.1 MGP_C3HHeJ_G0023927.1 mouse_genomes_project 18 21646907 21656898 + MGP_C3HHeJ_P0048802 Zfp397 protein_coding protein_coding MGP_C3HHeJ_T0048748.1 MGP_C3HHeJ_G0023904.1 mouse_genomes_project 18 13960497 14190241 - MGP_C3HHeJ_P0048748 Cdh2 protein_coding protein_coding MGP_C3HHeJ_T0048749.1 MGP_C3HHeJ_G0023904.1 mouse_genomes_project 18 14153289 14190309 - Cdh2 protein_coding retained_intron MGP_C3HHeJ_T0049123.1 MGP_C3HHeJ_G0024070.1 mouse_genomes_project 18 35873573 36038769 + MGP_C3HHeJ_P0049123 Pcdhga4 protein_coding protein_coding MGP_C3HHeJ_T0049124.1 MGP_C3HHeJ_G0024070.1 mouse_genomes_project 18 35875247 35876143 + MGP_C3HHeJ_P0049124 Pcdhga4 protein_coding protein_coding MGP_C3HHeJ_T0049459.1 MGP_C3HHeJ_G0024201.1 mouse_genomes_project 18 59840781 59844818 + MGP_C3HHeJ_P0049459 Rps14 protein_coding protein_coding MGP_C3HHeJ_T0049460.1 MGP_C3HHeJ_G0024201.1 mouse_genomes_project 18 59840937 59843691 + Rps14 protein_coding retained_intron MGP_C3HHeJ_T0049461.1 MGP_C3HHeJ_G0024201.1 mouse_genomes_project 18 59840952 59844813 + MGP_C3HHeJ_P0049461 Rps14 protein_coding protein_coding MGP_C3HHeJ_T0049462.1 MGP_C3HHeJ_G0024201.1 mouse_genomes_project 18 59841500 59844131 + MGP_C3HHeJ_P0049462 Rps14 protein_coding protein_coding MGP_C3HHeJ_T0049463.1 MGP_C3HHeJ_G0024201.1 mouse_genomes_project 18 59841987 59844729 + MGP_C3HHeJ_P0049463 Rps14 protein_coding protein_coding MGP_C3HHeJ_T0049464.1 MGP_C3HHeJ_G0024201.1 mouse_genomes_project 18 59842510 59844817 + MGP_C3HHeJ_P0049464 Rps14 protein_coding protein_coding MGP_C3HHeJ_T0049948.1 MGP_C3HHeJ_G0024350.1 mouse_genomes_project 18 89029147 89198645 + MGP_C3HHeJ_P0049948 Rttn protein_coding protein_coding MGP_C3HHeJ_T0048880.1 MGP_C3HHeJ_G0023965.1 mouse_genomes_project 18 30960546 31196911 + MGP_C3HHeJ_P0048880 Camk4 protein_coding protein_coding MGP_C3HHeJ_T0049538.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62192934 62591662 - MGP_C3HHeJ_P0049538 Piezo2 protein_coding protein_coding MGP_C3HHeJ_T0049539.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62192937 62215742 - MGP_C3HHeJ_P0049539 Piezo2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049540.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62194269 62440207 - MGP_C3HHeJ_P0049540 Piezo2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049541.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62203362 62212199 - Piezo2 protein_coding retained_intron MGP_C3HHeJ_T0049542.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62203809 62219253 - Piezo2 protein_coding retained_intron MGP_C3HHeJ_T0049543.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62241902 62590936 - MGP_C3HHeJ_P0049543 Piezo2 protein_coding protein_coding MGP_C3HHeJ_T0049544.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62261887 62338713 - MGP_C3HHeJ_P0049544 Piezo2 protein_coding protein_coding MGP_C3HHeJ_T0049545.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62295610 62375372 - MGP_C3HHeJ_P0049545 Piezo2 protein_coding protein_coding MGP_C3HHeJ_T0049546.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62295660 62591662 - MGP_C3HHeJ_P0049546 Piezo2 protein_coding protein_coding MGP_C3HHeJ_T0049547.1 MGP_C3HHeJ_G0024232.1 mouse_genomes_project 18 62311590 62591648 - Piezo2 protein_coding retained_intron MGP_C3HHeJ_T0049280.1 MGP_C3HHeJ_G0024130.1 mouse_genomes_project 18 42593448 42600467 - MGP_C3HHeJ_P0049280 Spink11 protein_coding protein_coding MGP_C3HHeJ_T0049281.1 MGP_C3HHeJ_G0024130.1 mouse_genomes_project 18 42593858 42595749 - Spink11 protein_coding retained_intron MGP_C3HHeJ_T0048683.1 MGP_C3HHeJ_G0023881.1 mouse_genomes_project 18 8753964 8869202 + MGP_C3HHeJ_P0048683 Rbbp8 protein_coding protein_coding MGP_C3HHeJ_T0048684.1 MGP_C3HHeJ_G0023881.1 mouse_genomes_project 18 8772538 8869202 + MGP_C3HHeJ_P0048684 Rbbp8 protein_coding protein_coding MGP_C3HHeJ_T0048563.1 MGP_C3HHeJ_G0023847.1 mouse_genomes_project 18 318003 326450 + MGP_C3HHeJ_P0048563 Bambi protein_coding protein_coding MGP_C3HHeJ_T0049423.1 MGP_C3HHeJ_G0024187.1 mouse_genomes_project 18 57600920 57622879 + MGP_C3HHeJ_P0049423 Isoc1 protein_coding protein_coding MGP_C3HHeJ_T0013169.1 MGP_C3HHeJ_G0011273.1 mouse_genomes_project 18 6860438 6861254 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048731.1 MGP_C3HHeJ_G0023892.1 mouse_genomes_project 18 10172743 10194448 + MGP_C3HHeJ_P0048731 Impact protein_coding protein_coding MGP_C3HHeJ_T0049015.1 MGP_C3HHeJ_G0024008.1 mouse_genomes_project 18 34458332 34478758 + MGP_C3HHeJ_P0049015 Pura protein_coding protein_coding MGP_C3HHeJ_T0049598.1 MGP_C3HHeJ_G0024248.1 mouse_genomes_project 18 65258817 65273935 - MGP_C3HHeJ_P0049598 Cplx4 protein_coding protein_coding MGP_C3HHeJ_T0049140.1 MGP_C3HHeJ_G0024082.1 mouse_genomes_project 18 35951031 36038769 + MGP_C3HHeJ_P0049140 Pcdhga11 protein_coding protein_coding MGP_C3HHeJ_T0049705.1 MGP_C3HHeJ_G0024274.1 mouse_genomes_project 18 69385056 69403688 + Ccdc68 protein_coding processed_transcript MGP_C3HHeJ_T0049706.1 MGP_C3HHeJ_G0024274.1 mouse_genomes_project 18 69385096 69431134 + MGP_C3HHeJ_P0049706 Ccdc68 protein_coding protein_coding MGP_C3HHeJ_T0049707.1 MGP_C3HHeJ_G0024274.1 mouse_genomes_project 18 69385200 69398596 + Ccdc68 protein_coding processed_transcript MGP_C3HHeJ_T0049708.1 MGP_C3HHeJ_G0024274.1 mouse_genomes_project 18 69385206 69431134 + MGP_C3HHeJ_P0049708 Ccdc68 protein_coding protein_coding MGP_C3HHeJ_T0011350.1 MGP_C3HHeJ_G0009483.1 mouse_genomes_project 18 13366360 13366661 + Gm22389 misc_RNA misc_RNA MGP_C3HHeJ_T0010166.1 MGP_C3HHeJ_G0008299.1 mouse_genomes_project 18 39678656 39678747 - Gm44476 miRNA miRNA MGP_C3HHeJ_T0099118.1 MGP_C3HHeJ_G0037312.1 mouse_genomes_project 18 32199991 32200053 - Gm23411 snRNA snRNA MGP_C3HHeJ_T0010168.1 MGP_C3HHeJ_G0008301.1 mouse_genomes_project 18 41880560 41880634 - miRNA miRNA MGP_C3HHeJ_T0098089.1 MGP_C3HHeJ_G0036301.1 mouse_genomes_project 18 68999418 68999527 + Gm24845 rRNA rRNA MGP_C3HHeJ_T0098091.1 MGP_C3HHeJ_G0036303.1 mouse_genomes_project 18 74641500 74641592 + Gm27781 rRNA rRNA MGP_C3HHeJ_T0049848.1 MGP_C3HHeJ_G0024321.1 mouse_genomes_project 18 79803648 79879191 + MGP_C3HHeJ_P0049848 Pard6g protein_coding protein_coding MGP_C3HHeJ_T0011365.1 MGP_C3HHeJ_G0009498.1 mouse_genomes_project 18 54377453 54377738 - Gm24514 misc_RNA misc_RNA MGP_C3HHeJ_T0049386.1 MGP_C3HHeJ_G0024172.1 mouse_genomes_project 18 53631814 53736131 - MGP_C3HHeJ_P0049386 Zfp608 protein_coding protein_coding MGP_C3HHeJ_T0100368.1 MGP_C3HHeJ_G0038562.1 mouse_genomes_project 18 26153821 26153953 + Gm24246 snoRNA snoRNA MGP_C3HHeJ_T0049887.1 MGP_C3HHeJ_G0024332.1 mouse_genomes_project 18 80508316 80712571 - MGP_C3HHeJ_P0049887 Atp9b protein_coding protein_coding MGP_C3HHeJ_T0049888.1 MGP_C3HHeJ_G0024332.1 mouse_genomes_project 18 80508557 80712452 - MGP_C3HHeJ_P0049888 Atp9b protein_coding unknown_likely_coding MGP_C3HHeJ_T0013164.1 MGP_C3HHeJ_G0011268.1 mouse_genomes_project 18 2471298 2471671 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099138.1 MGP_C3HHeJ_G0037332.1 mouse_genomes_project 18 78220657 78220764 + Gm26430 snRNA snRNA MGP_C3HHeJ_T0048734.1 MGP_C3HHeJ_G0023895.1 mouse_genomes_project 18 11676952 11677289 + MGP_C3HHeJ_P0048734 protein_coding protein_coding MGP_C3HHeJ_T0013221.1 MGP_C3HHeJ_G0011325.1 mouse_genomes_project 18 90432510 90432972 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100363.1 MGP_C3HHeJ_G0038557.1 mouse_genomes_project 18 7742933 7743055 + Gm25116 snoRNA snoRNA MGP_C3HHeJ_T0049421.1 MGP_C3HHeJ_G0024185.1 mouse_genomes_project 18 56918749 57140433 - MGP_C3HHeJ_P0049421 Fbn2 protein_coding protein_coding MGP_C3HHeJ_T0048760.1 MGP_C3HHeJ_G0023911.1 mouse_genomes_project 18 18091487 18124672 + MGP_C3HHeJ_P0048760 Dsg3 protein_coding protein_coding MGP_C3HHeJ_T0049037.1 MGP_C3HHeJ_G0024015.1 mouse_genomes_project 18 34850353 34854786 - MGP_C3HHeJ_P0049037 Sra1 protein_coding protein_coding MGP_C3HHeJ_T0049038.1 MGP_C3HHeJ_G0024015.1 mouse_genomes_project 18 34850918 34853870 - MGP_C3HHeJ_P0049038 Sra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049039.1 MGP_C3HHeJ_G0024015.1 mouse_genomes_project 18 34850944 34853890 - Sra1 protein_coding retained_intron MGP_C3HHeJ_T0049040.1 MGP_C3HHeJ_G0024015.1 mouse_genomes_project 18 34851101 34853869 - MGP_C3HHeJ_P0049040 Sra1 protein_coding protein_coding MGP_C3HHeJ_T0049041.1 MGP_C3HHeJ_G0024015.1 mouse_genomes_project 18 34853405 34853860 - Sra1 protein_coding retained_intron MGP_C3HHeJ_T0049042.1 MGP_C3HHeJ_G0024015.1 mouse_genomes_project 18 34854749 34862681 - MGP_C3HHeJ_P0049042 Sra1 protein_coding protein_coding MGP_C3HHeJ_T0049146.1 MGP_C3HHeJ_G0024085.1 mouse_genomes_project 18 36011412 36038769 + MGP_C3HHeJ_P0049146 Pcdhga8 protein_coding protein_coding MGP_C3HHeJ_T0049147.1 MGP_C3HHeJ_G0024085.1 mouse_genomes_project 18 36011734 36038769 + MGP_C3HHeJ_P0049147 Pcdhga8 protein_coding protein_coding MGP_C3HHeJ_T0049148.1 MGP_C3HHeJ_G0024085.1 mouse_genomes_project 18 36011789 36014889 + Pcdhga8 protein_coding retained_intron MGP_C3HHeJ_T0006930.1 MGP_C3HHeJ_G0005693.1 mouse_genomes_project 18 30346520 30366906 - A830052D11Rik lincRNA lincRNA MGP_C3HHeJ_T0049316.1 MGP_C3HHeJ_G0024146.1 mouse_genomes_project 18 45201934 45211090 - MGP_C3HHeJ_P0049316 Atg12 protein_coding protein_coding MGP_C3HHeJ_T0049740.1 MGP_C3HHeJ_G0024285.1 mouse_genomes_project 18 73319555 73365022 - MGP_C3HHeJ_P0049740 Me2 protein_coding protein_coding MGP_C3HHeJ_T0049944.1 MGP_C3HHeJ_G0024349.1 mouse_genomes_project 18 88711803 88805716 - Socs6 protein_coding processed_transcript MGP_C3HHeJ_T0049945.1 MGP_C3HHeJ_G0024349.1 mouse_genomes_project 18 88715274 88954765 - Socs6 protein_coding processed_transcript MGP_C3HHeJ_T0049946.1 MGP_C3HHeJ_G0024349.1 mouse_genomes_project 18 88925172 88954748 - MGP_C3HHeJ_P0049946 Socs6 protein_coding protein_coding MGP_C3HHeJ_T0049947.1 MGP_C3HHeJ_G0024349.1 mouse_genomes_project 18 88930949 88988428 - MGP_C3HHeJ_P0049947 Socs6 protein_coding protein_coding MGP_C3HHeJ_T0011348.1 MGP_C3HHeJ_G0009481.1 mouse_genomes_project 18 673355 673678 + Gm24632 misc_RNA misc_RNA MGP_C3HHeJ_T0049161.1 MGP_C3HHeJ_G0024088.1 mouse_genomes_project 18 36134898 36144604 - Hdac3 protein_coding retained_intron MGP_C3HHeJ_T0049162.1 MGP_C3HHeJ_G0024088.1 mouse_genomes_project 18 36136026 36143123 - Hdac3 protein_coding retained_intron MGP_C3HHeJ_T0049163.1 MGP_C3HHeJ_G0024088.1 mouse_genomes_project 18 36136026 36153822 - MGP_C3HHeJ_P0049163 Hdac3 protein_coding protein_coding MGP_C3HHeJ_T0049164.1 MGP_C3HHeJ_G0024088.1 mouse_genomes_project 18 36136032 36153765 - Hdac3 protein_coding processed_transcript MGP_C3HHeJ_T0100361.1 MGP_C3HHeJ_G0038555.1 mouse_genomes_project 18 6544553 6544681 + Gm22765 snoRNA snoRNA MGP_C3HHeJ_T0049834.1 MGP_C3HHeJ_G0024314.1 mouse_genomes_project 18 77471292 77480427 + MGP_C3HHeJ_P0049834 Atp5a1 protein_coding protein_coding MGP_C3HHeJ_T0049835.1 MGP_C3HHeJ_G0024314.1 mouse_genomes_project 18 77471519 77480424 + MGP_C3HHeJ_P0049835 Atp5a1 protein_coding protein_coding MGP_C3HHeJ_T0049836.1 MGP_C3HHeJ_G0024314.1 mouse_genomes_project 18 77471555 77480213 + MGP_C3HHeJ_P0049836 Atp5a1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049837.1 MGP_C3HHeJ_G0024314.1 mouse_genomes_project 18 77476512 77478657 + Atp5a1 protein_coding retained_intron MGP_C3HHeJ_T0049838.1 MGP_C3HHeJ_G0024314.1 mouse_genomes_project 18 77477389 77479447 + Atp5a1 protein_coding retained_intron MGP_C3HHeJ_T0049116.1 MGP_C3HHeJ_G0024064.1 mouse_genomes_project 18 35824084 35825453 - MGP_C3HHeJ_P0049116 Slc25a2 protein_coding protein_coding MGP_C3HHeJ_T0048843.1 MGP_C3HHeJ_G0023943.1 mouse_genomes_project 18 28159183 28238270 + MGP_C3HHeJ_P0048843 Pik3c3 protein_coding protein_coding MGP_C3HHeJ_T0048844.1 MGP_C3HHeJ_G0023943.1 mouse_genomes_project 18 28159306 28220881 + MGP_C3HHeJ_P0048844 Pik3c3 protein_coding protein_coding MGP_C3HHeJ_T0048845.1 MGP_C3HHeJ_G0023943.1 mouse_genomes_project 18 28159308 28233183 + MGP_C3HHeJ_P0048845 Pik3c3 protein_coding protein_coding MGP_C3HHeJ_T0048846.1 MGP_C3HHeJ_G0023943.1 mouse_genomes_project 18 28159363 28238264 + MGP_C3HHeJ_P0048846 Pik3c3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010169.1 MGP_C3HHeJ_G0008302.1 mouse_genomes_project 18 54768077 54768168 - Gm23335 miRNA miRNA MGP_C3HHeJ_T0049309.1 MGP_C3HHeJ_G0024143.1 mouse_genomes_project 18 45027032 45063272 - MGP_C3HHeJ_P0049309 Tmed7 protein_coding protein_coding MGP_C3HHeJ_T0049311.1 MGP_C3HHeJ_G0024143.1 mouse_genomes_project 18 45052096 45063474 - Tmed7 protein_coding retained_intron MGP_C3HHeJ_T0049312.1 MGP_C3HHeJ_G0024143.1 mouse_genomes_project 18 45054189 45063493 - MGP_C3HHeJ_P0049312 Tmed7 protein_coding protein_coding MGP_C3HHeJ_T0048648.1 MGP_C3HHeJ_G0023866.1 mouse_genomes_project 18 6140812 6144159 + MGP_C3HHeJ_P0048648 Fzd8 protein_coding protein_coding MGP_C3HHeJ_T0011374.1 MGP_C3HHeJ_G0009507.1 mouse_genomes_project 18 84761667 84761970 + Gm22819 misc_RNA misc_RNA MGP_C3HHeJ_T0049490.1 MGP_C3HHeJ_G0024212.1 mouse_genomes_project 18 60306118 60380770 + MGP_C3HHeJ_P0049490 Pde6a protein_coding protein_coding MGP_C3HHeJ_T0049491.1 MGP_C3HHeJ_G0024212.1 mouse_genomes_project 18 60364230 60380770 + MGP_C3HHeJ_P0049491 Pde6a protein_coding protein_coding MGP_C3HHeJ_T0013198.1 MGP_C3HHeJ_G0011302.1 mouse_genomes_project 18 40600151 40600862 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0017401.1 MGP_C3HHeJ_G0015124.1 mouse_genomes_project 18 36020197 36037094 + Gm38182 processed_transcript processed_transcript MGP_C3HHeJ_T0017402.1 MGP_C3HHeJ_G0015124.1 mouse_genomes_project 18 36020466 36036952 + Gm38182 processed_transcript processed_transcript MGP_C3HHeJ_T0017403.1 MGP_C3HHeJ_G0015124.1 mouse_genomes_project 18 36020677 36037273 + Gm38182 processed_transcript processed_transcript MGP_C3HHeJ_T0017404.1 MGP_C3HHeJ_G0015124.1 mouse_genomes_project 18 36020762 36037276 + Gm38182 processed_transcript processed_transcript MGP_C3HHeJ_T0017405.1 MGP_C3HHeJ_G0015124.1 mouse_genomes_project 18 36021103 36037274 + Gm38182 processed_transcript processed_transcript MGP_C3HHeJ_T0049440.1 MGP_C3HHeJ_G0024197.1 mouse_genomes_project 18 59617175 59629250 + MGP_C3HHeJ_P0049440 Rbm22 protein_coding protein_coding MGP_C3HHeJ_T0049441.1 MGP_C3HHeJ_G0024197.1 mouse_genomes_project 18 59617203 59617926 + Rbm22 protein_coding retained_intron MGP_C3HHeJ_T0049442.1 MGP_C3HHeJ_G0024197.1 mouse_genomes_project 18 59617207 59626748 + Rbm22 protein_coding retained_intron MGP_C3HHeJ_T0049443.1 MGP_C3HHeJ_G0024197.1 mouse_genomes_project 18 59626855 59627580 + Rbm22 protein_coding retained_intron MGP_C3HHeJ_T0049444.1 MGP_C3HHeJ_G0024197.1 mouse_genomes_project 18 59627038 59628432 + Rbm22 protein_coding retained_intron MGP_C3HHeJ_T0049335.1 MGP_C3HHeJ_G0024152.1 mouse_genomes_project 18 48418795 48560568 + MGP_C3HHeJ_P0049335 Dmxl1 protein_coding protein_coding MGP_C3HHeJ_T0049336.1 MGP_C3HHeJ_G0024152.1 mouse_genomes_project 18 48419122 48561787 + MGP_C3HHeJ_P0049336 Dmxl1 protein_coding protein_coding MGP_C3HHeJ_T0049337.1 MGP_C3HHeJ_G0024152.1 mouse_genomes_project 18 48419215 48558695 + MGP_C3HHeJ_P0049337 Dmxl1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049338.1 MGP_C3HHeJ_G0024152.1 mouse_genomes_project 18 48487460 48527026 + Dmxl1 protein_coding retained_intron MGP_C3HHeJ_T0049339.1 MGP_C3HHeJ_G0024152.1 mouse_genomes_project 18 48545868 48550462 + Dmxl1 protein_coding retained_intron MGP_C3HHeJ_T0049340.1 MGP_C3HHeJ_G0024152.1 mouse_genomes_project 18 48552227 48555906 + Dmxl1 protein_coding retained_intron MGP_C3HHeJ_T0049530.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62157242 62179907 + MGP_C3HHeJ_P0049530 Napg protein_coding protein_coding MGP_C3HHeJ_T0049531.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62157267 62160060 + Napg protein_coding retained_intron MGP_C3HHeJ_T0049532.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62157307 62177389 + MGP_C3HHeJ_P0049532 Napg protein_coding protein_coding MGP_C3HHeJ_T0049533.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62157328 62162192 + Napg protein_coding retained_intron MGP_C3HHeJ_T0049534.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62159644 62162420 + Napg protein_coding retained_intron MGP_C3HHeJ_T0049535.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62165362 62171238 + Napg protein_coding processed_transcript MGP_C3HHeJ_T0049536.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62165445 62175032 + Napg protein_coding retained_intron MGP_C3HHeJ_T0049537.1 MGP_C3HHeJ_G0024231.1 mouse_genomes_project 18 62167617 62175481 + Napg protein_coding processed_transcript MGP_C3HHeJ_T0003753.1 MGP_C3HHeJ_G0003371.1 mouse_genomes_project 18 60802764 60804103 - Gm38165 antisense antisense MGP_C3HHeJ_T0049949.1 MGP_C3HHeJ_G0024351.1 mouse_genomes_project 18 89264710 89339948 + MGP_C3HHeJ_P0049949 Cd226 protein_coding protein_coding MGP_C3HHeJ_T0049950.1 MGP_C3HHeJ_G0024351.1 mouse_genomes_project 18 89264777 89338908 + MGP_C3HHeJ_P0049950 Cd226 protein_coding protein_coding MGP_C3HHeJ_T0010185.1 MGP_C3HHeJ_G0008318.1 mouse_genomes_project 18 67679898 67679952 - Mir7219 miRNA miRNA MGP_C3HHeJ_T0049381.1 MGP_C3HHeJ_G0024169.1 mouse_genomes_project 18 52161924 52267324 + MGP_C3HHeJ_P0049381 Prdm6 protein_coding protein_coding MGP_C3HHeJ_T0049382.1 MGP_C3HHeJ_G0024169.1 mouse_genomes_project 18 52162407 52268112 + MGP_C3HHeJ_P0049382 Prdm6 protein_coding protein_coding MGP_C3HHeJ_T0049383.1 MGP_C3HHeJ_G0024169.1 mouse_genomes_project 18 52249945 52268112 + MGP_C3HHeJ_P0049383 Prdm6 protein_coding protein_coding MGP_C3HHeJ_T0048936.1 MGP_C3HHeJ_G0023982.1 mouse_genomes_project 18 32778318 32798217 - MGP_C3HHeJ_P0048936 Cdc25c protein_coding protein_coding MGP_C3HHeJ_T0049133.1 MGP_C3HHeJ_G0024077.1 mouse_genomes_project 18 35919391 36038769 + MGP_C3HHeJ_P0049133 Pcdhgb5 protein_coding protein_coding MGP_C3HHeJ_T0049134.1 MGP_C3HHeJ_G0024077.1 mouse_genomes_project 18 35919436 35925840 + Pcdhgb5 protein_coding retained_intron MGP_C3HHeJ_T0049891.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82333971 82425627 + MGP_C3HHeJ_P0049891 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049892.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82333973 82376107 + MGP_C3HHeJ_P0049892 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049893.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82333987 82454397 + MGP_C3HHeJ_P0049893 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049894.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82334195 82452977 + MGP_C3HHeJ_P0049894 Mbp protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049895.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82357534 82454396 + MGP_C3HHeJ_P0049895 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049896.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421386 82454397 + MGP_C3HHeJ_P0049896 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049897.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421386 82454397 + MGP_C3HHeJ_P0049897 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049898.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421393 82454387 + MGP_C3HHeJ_P0049898 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049899.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421431 82454397 + MGP_C3HHeJ_P0049899 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049900.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421453 82452916 + MGP_C3HHeJ_P0049900 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049901.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421469 82454397 + MGP_C3HHeJ_P0049901 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049902.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82421506 82454386 + MGP_C3HHeJ_P0049902 Mbp protein_coding protein_coding MGP_C3HHeJ_T0049903.1 MGP_C3HHeJ_G0024335.1 mouse_genomes_project 18 82432021 82453047 + Mbp protein_coding processed_transcript MGP_C3HHeJ_T0048767.1 MGP_C3HHeJ_G0023916.1 mouse_genomes_project 18 18427346 18509863 - MGP_C3HHeJ_P0048767 Trappc8 protein_coding protein_coding MGP_C3HHeJ_T0048768.1 MGP_C3HHeJ_G0023916.1 mouse_genomes_project 18 18428997 18509852 - MGP_C3HHeJ_P0048768 Trappc8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0048769.1 MGP_C3HHeJ_G0023916.1 mouse_genomes_project 18 18457065 18509863 - MGP_C3HHeJ_P0048769 Trappc8 protein_coding protein_coding MGP_C3HHeJ_T0049615.1 MGP_C3HHeJ_G0024255.1 mouse_genomes_project 18 66668877 66699300 + MGP_C3HHeJ_P0049615 Impa2 protein_coding protein_coding MGP_C3HHeJ_T0048821.1 MGP_C3HHeJ_G0023935.1 mouse_genomes_project 18 22304923 22329224 - MGP_C3HHeJ_P0048821 Slc39a6 protein_coding protein_coding MGP_C3HHeJ_T0048822.1 MGP_C3HHeJ_G0023935.1 mouse_genomes_project 18 22307307 22328922 - MGP_C3HHeJ_P0048822 Slc39a6 protein_coding protein_coding MGP_C3HHeJ_T0048823.1 MGP_C3HHeJ_G0023935.1 mouse_genomes_project 18 22321220 22324845 - Slc39a6 protein_coding retained_intron MGP_C3HHeJ_T0048824.1 MGP_C3HHeJ_G0023935.1 mouse_genomes_project 18 22326891 22328700 - MGP_C3HHeJ_P0048824 Slc39a6 protein_coding protein_coding MGP_C3HHeJ_T0048735.1 MGP_C3HHeJ_G0023896.1 mouse_genomes_project 18 11883972 11951832 - MGP_C3HHeJ_P0048735 Ss18 protein_coding protein_coding MGP_C3HHeJ_T0048736.1 MGP_C3HHeJ_G0023896.1 mouse_genomes_project 18 11885701 11951980 - MGP_C3HHeJ_P0048736 Ss18 protein_coding protein_coding MGP_C3HHeJ_T0048737.1 MGP_C3HHeJ_G0023896.1 mouse_genomes_project 18 11885701 11951980 - MGP_C3HHeJ_P0048737 Ss18 protein_coding protein_coding MGP_C3HHeJ_T0049747.1 MGP_C3HHeJ_G0024287.1 mouse_genomes_project 18 73478647 73523945 - MGP_C3HHeJ_P0049747 Mapk4 protein_coding protein_coding MGP_C3HHeJ_T0049748.1 MGP_C3HHeJ_G0024287.1 mouse_genomes_project 18 73478651 73624038 - MGP_C3HHeJ_P0049748 Mapk4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049749.1 MGP_C3HHeJ_G0024287.1 mouse_genomes_project 18 73524679 73625006 - Mapk4 protein_coding processed_transcript MGP_C3HHeJ_T0010181.1 MGP_C3HHeJ_G0008314.1 mouse_genomes_project 18 60759605 60759675 - Mir145a miRNA miRNA MGP_C3HHeJ_T0049321.1 MGP_C3HHeJ_G0024149.1 mouse_genomes_project 18 45439633 45576985 + MGP_C3HHeJ_P0049321 Commd10 protein_coding protein_coding MGP_C3HHeJ_T0049817.1 MGP_C3HHeJ_G0024308.1 mouse_genomes_project 18 76829364 76830616 - MGP_C3HHeJ_P0049817 Gm7276 protein_coding protein_coding MGP_C3HHeJ_T0011361.1 MGP_C3HHeJ_G0009494.1 mouse_genomes_project 18 39128625 39128930 - Gm22515 misc_RNA misc_RNA MGP_C3HHeJ_T0049385.1 MGP_C3HHeJ_G0024171.1 mouse_genomes_project 18 52561003 52651480 + MGP_C3HHeJ_P0049385 Csnk1g3 protein_coding protein_coding MGP_C3HHeJ_T0049380.1 MGP_C3HHeJ_G0024168.1 mouse_genomes_project 18 52102068 52115383 - MGP_C3HHeJ_P0049380 Ppic protein_coding protein_coding MGP_C3HHeJ_T0049434.1 MGP_C3HHeJ_G0024192.1 mouse_genomes_project 18 59302574 59311798 - MGP_C3HHeJ_P0049434 Gm4841 protein_coding protein_coding MGP_C3HHeJ_T0049246.1 MGP_C3HHeJ_G0024112.1 mouse_genomes_project 18 40629633 40698729 + MGP_C3HHeJ_P0049246 Rbm27 protein_coding protein_coding MGP_C3HHeJ_T0049247.1 MGP_C3HHeJ_G0024112.1 mouse_genomes_project 18 40629633 40698729 + MGP_C3HHeJ_P0049247 Rbm27 protein_coding protein_coding MGP_C3HHeJ_T0013208.1 MGP_C3HHeJ_G0011312.1 mouse_genomes_project 18 54514081 54515059 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049729.1 MGP_C3HHeJ_G0024281.1 mouse_genomes_project 18 70737499 71896745 - MGP_C3HHeJ_P0049729 Dcc protein_coding protein_coding MGP_C3HHeJ_T0049730.1 MGP_C3HHeJ_G0024281.1 mouse_genomes_project 18 70737751 71896693 - MGP_C3HHeJ_P0049730 Dcc protein_coding protein_coding MGP_C3HHeJ_T0049731.1 MGP_C3HHeJ_G0024281.1 mouse_genomes_project 18 71481862 71896717 - Dcc protein_coding retained_intron MGP_C3HHeJ_T0006932.1 MGP_C3HHeJ_G0005695.1 mouse_genomes_project 18 30929272 30960728 - 2310026I22Rik lincRNA lincRNA MGP_C3HHeJ_T0099108.1 MGP_C3HHeJ_G0037302.1 mouse_genomes_project 18 591665 591729 - Gm23643 snRNA snRNA MGP_C3HHeJ_T0049485.1 MGP_C3HHeJ_G0024210.1 mouse_genomes_project 18 60213549 60260011 - MGP_C3HHeJ_P0049485 Hmgxb3 protein_coding protein_coding MGP_C3HHeJ_T0048750.1 MGP_C3HHeJ_G0023905.1 mouse_genomes_project 18 17433011 17475422 - MGP_C3HHeJ_P0048750 Dsc3 protein_coding protein_coding MGP_C3HHeJ_T0048751.1 MGP_C3HHeJ_G0023905.1 mouse_genomes_project 18 17435746 17475250 - MGP_C3HHeJ_P0048751 Dsc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003724.1 MGP_C3HHeJ_G0003347.1 mouse_genomes_project 18 7767124 7771285 - Mir133a-1hg antisense antisense MGP_C3HHeJ_T0048766.1 MGP_C3HHeJ_G0023915.1 mouse_genomes_project 18 18266067 18340591 - MGP_C3HHeJ_P0048766 B4galt6 protein_coding protein_coding MGP_C3HHeJ_T0049110.1 MGP_C3HHeJ_G0024059.1 mouse_genomes_project 18 35683488 35688529 + MGP_C3HHeJ_P0049110 Pcdhb18 protein_coding protein_coding MGP_C3HHeJ_T0049082.1 MGP_C3HHeJ_G0024038.1 mouse_genomes_project 18 35196622 35358175 + MGP_C3HHeJ_P0049082 Pcdha11 protein_coding protein_coding MGP_C3HHeJ_T0013180.1 MGP_C3HHeJ_G0011284.1 mouse_genomes_project 18 18708333 18708777 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0101157.1 MGP_C3HHeJ_G0039314.1 mouse_genomes_project 18 32221580 32236199 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101158.1 MGP_C3HHeJ_G0039314.1 mouse_genomes_project 18 32223598 32223870 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0049036.1 MGP_C3HHeJ_G0024014.1 mouse_genomes_project 18 34847736 34849594 + MGP_C3HHeJ_P0049036 Eif4ebp3 protein_coding protein_coding MGP_C3HHeJ_T0049954.1 MGP_C3HHeJ_G0024354.1 mouse_genomes_project 18 90707297 90719932 + MGP_C3HHeJ_P0049954 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0049367.1 MGP_C3HHeJ_G0024163.1 mouse_genomes_project 18 51306250 51324086 + MGP_C3HHeJ_P0049367 1700034E13Rik protein_coding protein_coding MGP_C3HHeJ_T0049368.1 MGP_C3HHeJ_G0024163.1 mouse_genomes_project 18 51306257 51324086 + MGP_C3HHeJ_P0049368 1700034E13Rik protein_coding protein_coding MGP_C3HHeJ_T0049842.1 MGP_C3HHeJ_G0024318.1 mouse_genomes_project 18 77773819 77797154 - MGP_C3HHeJ_P0049842 Slc14a1 protein_coding protein_coding MGP_C3HHeJ_T0049843.1 MGP_C3HHeJ_G0024318.1 mouse_genomes_project 18 77775376 77816968 - MGP_C3HHeJ_P0049843 Slc14a1 protein_coding protein_coding MGP_C3HHeJ_T0049844.1 MGP_C3HHeJ_G0024318.1 mouse_genomes_project 18 77775376 77797059 - MGP_C3HHeJ_P0049844 Slc14a1 protein_coding protein_coding MGP_C3HHeJ_T0048743.1 MGP_C3HHeJ_G0023900.1 mouse_genomes_project 18 12702440 12716694 - MGP_C3HHeJ_P0048743 Aqp4 protein_coding protein_coding MGP_C3HHeJ_T0049249.1 MGP_C3HHeJ_G0024114.1 mouse_genomes_project 18 40866989 40942312 + MGP_C3HHeJ_P0049249 Tcerg1 protein_coding protein_coding MGP_C3HHeJ_T0049250.1 MGP_C3HHeJ_G0024114.1 mouse_genomes_project 18 40867002 40941605 + MGP_C3HHeJ_P0049250 Tcerg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0048761.1 MGP_C3HHeJ_G0023912.1 mouse_genomes_project 18 18141451 18191231 + MGP_C3HHeJ_P0048761 Dsg2 protein_coding protein_coding MGP_C3HHeJ_T0048762.1 MGP_C3HHeJ_G0023912.1 mouse_genomes_project 18 18141532 18169743 + MGP_C3HHeJ_P0048762 Dsg2 protein_coding protein_coding MGP_C3HHeJ_T0048763.1 MGP_C3HHeJ_G0023912.1 mouse_genomes_project 18 18141623 18167106 + MGP_C3HHeJ_P0048763 Dsg2 protein_coding protein_coding MGP_C3HHeJ_T0011370.1 MGP_C3HHeJ_G0009503.1 mouse_genomes_project 18 69230824 69230934 - Gm22508 misc_RNA misc_RNA MGP_C3HHeJ_T0013178.1 MGP_C3HHeJ_G0011282.1 mouse_genomes_project 18 12302682 12303129 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049624.1 MGP_C3HHeJ_G0024262.1 mouse_genomes_project 18 67014248 67040270 - MGP_C3HHeJ_P0049624 Cep76 protein_coding protein_coding MGP_C3HHeJ_T0049853.1 MGP_C3HHeJ_G0024326.1 mouse_genomes_project 18 79968657 79985809 + MGP_C3HHeJ_P0049853 Txnl4a protein_coding protein_coding MGP_C3HHeJ_T0049857.1 MGP_C3HHeJ_G0024326.1 mouse_genomes_project 18 79968725 79984478 + MGP_C3HHeJ_P0049857 Txnl4a protein_coding protein_coding MGP_C3HHeJ_T0049859.1 MGP_C3HHeJ_G0024326.1 mouse_genomes_project 18 79968756 79981155 + Txnl4a protein_coding retained_intron MGP_C3HHeJ_T0049864.1 MGP_C3HHeJ_G0024326.1 mouse_genomes_project 18 79977242 79984614 + Txnl4a protein_coding processed_transcript MGP_C3HHeJ_T0048872.1 MGP_C3HHeJ_G0023961.1 mouse_genomes_project 18 30365838 30425019 + MGP_C3HHeJ_P0048872 Bin1 protein_coding protein_coding MGP_C3HHeJ_T0048873.1 MGP_C3HHeJ_G0023961.1 mouse_genomes_project 18 30365838 30425019 + MGP_C3HHeJ_P0048873 Bin1 protein_coding protein_coding MGP_C3HHeJ_T0100392.1 MGP_C3HHeJ_G0038586.1 mouse_genomes_project 18 79287750 79287871 - Gm25824 snoRNA snoRNA MGP_C3HHeJ_T0049277.1 MGP_C3HHeJ_G0024128.1 mouse_genomes_project 18 42561799 42565034 - MGP_C3HHeJ_P0049277 Gm10267 protein_coding protein_coding MGP_C3HHeJ_T0049278.1 MGP_C3HHeJ_G0024128.1 mouse_genomes_project 18 42561808 42564478 - MGP_C3HHeJ_P0049278 Gm10267 protein_coding protein_coding MGP_C3HHeJ_T0049425.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021280 58035976 + MGP_C3HHeJ_P0049425 A730017C20Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049426.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021314 58035976 + MGP_C3HHeJ_P0049426 A730017C20Rik protein_coding protein_coding MGP_C3HHeJ_T0049427.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021494 58035976 + MGP_C3HHeJ_P0049427 A730017C20Rik protein_coding protein_coding MGP_C3HHeJ_T0049428.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021498 58034635 + MGP_C3HHeJ_P0049428 A730017C20Rik protein_coding protein_coding MGP_C3HHeJ_T0049429.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021526 58034838 + MGP_C3HHeJ_P0049429 A730017C20Rik protein_coding protein_coding MGP_C3HHeJ_T0049430.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021542 58033678 + A730017C20Rik protein_coding retained_intron MGP_C3HHeJ_T0049431.1 MGP_C3HHeJ_G0024189.1 mouse_genomes_project 18 58021543 58034945 + MGP_C3HHeJ_P0049431 A730017C20Rik protein_coding protein_coding MGP_C3HHeJ_T0048884.1 MGP_C3HHeJ_G0023967.1 mouse_genomes_project 18 31430913 31457534 - MGP_C3HHeJ_P0048884 Nrep protein_coding protein_coding MGP_C3HHeJ_T0048885.1 MGP_C3HHeJ_G0023967.1 mouse_genomes_project 18 31430913 31457971 - MGP_C3HHeJ_P0048885 Nrep protein_coding protein_coding MGP_C3HHeJ_T0048886.1 MGP_C3HHeJ_G0023967.1 mouse_genomes_project 18 31430913 31457689 - MGP_C3HHeJ_P0048886 Nrep protein_coding protein_coding MGP_C3HHeJ_T0049549.1 MGP_C3HHeJ_G0024234.1 mouse_genomes_project 18 62911318 63194535 + MGP_C3HHeJ_P0049549 Wdr7 protein_coding protein_coding MGP_C3HHeJ_T0049925.1 MGP_C3HHeJ_G0024342.1 mouse_genomes_project 18 84605073 84623168 - MGP_C3HHeJ_P0049925 Cndp2 protein_coding protein_coding MGP_C3HHeJ_T0049926.1 MGP_C3HHeJ_G0024342.1 mouse_genomes_project 18 84605073 84619531 - MGP_C3HHeJ_P0049926 Cndp2 protein_coding protein_coding MGP_C3HHeJ_T0101163.1 MGP_C3HHeJ_G0039317.1 mouse_genomes_project 18 74917701 74926335 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101164.1 MGP_C3HHeJ_G0039317.1 mouse_genomes_project 18 74917972 74918230 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0101165.1 MGP_C3HHeJ_G0039317.1 mouse_genomes_project 18 74924688 74926347 - transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0049594.1 MGP_C3HHeJ_G0024246.1 mouse_genomes_project 18 65156896 65172449 + MGP_C3HHeJ_P0049594 Grp protein_coding protein_coding MGP_C3HHeJ_T0049595.1 MGP_C3HHeJ_G0024246.1 mouse_genomes_project 18 65158676 65165418 + MGP_C3HHeJ_P0049595 Grp protein_coding protein_coding MGP_C3HHeJ_T0049596.1 MGP_C3HHeJ_G0024246.1 mouse_genomes_project 18 65158686 65172448 + MGP_C3HHeJ_P0049596 Grp protein_coding protein_coding MGP_C3HHeJ_T0013215.1 MGP_C3HHeJ_G0011319.1 mouse_genomes_project 18 76868492 76869466 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0048898.1 MGP_C3HHeJ_G0023971.1 mouse_genomes_project 18 32352785 32358284 + Srp19 protein_coding processed_transcript MGP_C3HHeJ_T0048899.1 MGP_C3HHeJ_G0023971.1 mouse_genomes_project 18 32353061 32358460 + Srp19 protein_coding processed_transcript MGP_C3HHeJ_T0048900.1 MGP_C3HHeJ_G0023971.1 mouse_genomes_project 18 32353083 32358490 + Srp19 protein_coding retained_intron MGP_C3HHeJ_T0048901.1 MGP_C3HHeJ_G0023971.1 mouse_genomes_project 18 32353083 32358538 + MGP_C3HHeJ_P0048901 Srp19 protein_coding protein_coding MGP_C3HHeJ_T0048902.1 MGP_C3HHeJ_G0023971.1 mouse_genomes_project 18 32353096 32358360 + MGP_C3HHeJ_P0048902 Srp19 protein_coding protein_coding MGP_C3HHeJ_T0048903.1 MGP_C3HHeJ_G0023971.1 mouse_genomes_project 18 32353114 32358492 + MGP_C3HHeJ_P0048903 Srp19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049847.1 MGP_C3HHeJ_G0024320.1 mouse_genomes_project 18 78452042 78826551 - MGP_C3HHeJ_P0049847 Setbp1 protein_coding protein_coding MGP_C3HHeJ_T0048860.1 MGP_C3HHeJ_G0023952.1 mouse_genomes_project 18 29787095 29788123 - MGP_C3HHeJ_P0048860 Gm6665 protein_coding protein_coding MGP_C3HHeJ_T0010183.1 MGP_C3HHeJ_G0008316.1 mouse_genomes_project 18 64506398 64506464 + Mir122 miRNA miRNA MGP_C3HHeJ_T0000974.1 MGP_C3HHeJ_G0000911.1 mouse_genomes_project 18 44642658 44643369 + TEC TEC MGP_C3HHeJ_T0003745.1 MGP_C3HHeJ_G0003365.1 mouse_genomes_project 18 37519520 37575931 - Gm15336 antisense antisense MGP_C3HHeJ_T0049445.1 MGP_C3HHeJ_G0024198.1 mouse_genomes_project 18 59633207 59651535 - MGP_C3HHeJ_P0049445 Myoz3 protein_coding protein_coding MGP_C3HHeJ_T0003740.1 MGP_C3HHeJ_G0003360.1 mouse_genomes_project 18 35848616 35849297 - Gm37118 antisense antisense MGP_C3HHeJ_T0049370.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51436377 51507868 + MGP_C3HHeJ_P0049370 Sncaip protein_coding protein_coding MGP_C3HHeJ_T0049371.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51507336 51579910 + MGP_C3HHeJ_P0049371 Sncaip protein_coding protein_coding MGP_C3HHeJ_T0049372.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51507791 51580398 + MGP_C3HHeJ_P0049372 Sncaip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049373.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51507791 51580398 + MGP_C3HHeJ_P0049373 Sncaip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049374.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51507791 51580105 + MGP_C3HHeJ_P0049374 Sncaip protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049375.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51507837 51579831 + MGP_C3HHeJ_P0049375 Sncaip protein_coding protein_coding MGP_C3HHeJ_T0049376.1 MGP_C3HHeJ_G0024165.1 mouse_genomes_project 18 51507837 51579831 + MGP_C3HHeJ_P0049376 Sncaip protein_coding protein_coding MGP_C3HHeJ_T0048756.1 MGP_C3HHeJ_G0023907.1 mouse_genomes_project 18 17561257 17594255 - MGP_C3HHeJ_P0048756 Dsc1 protein_coding protein_coding MGP_C3HHeJ_T0049422.1 MGP_C3HHeJ_G0024186.1 mouse_genomes_project 18 57484015 57550051 + MGP_C3HHeJ_P0049422 Slc27a6 protein_coding protein_coding MGP_C3HHeJ_T0010192.1 MGP_C3HHeJ_G0008325.1 mouse_genomes_project 18 81831554 81831625 - Mir5127 miRNA miRNA MGP_C3HHeJ_T0049626.1 MGP_C3HHeJ_G0024264.1 mouse_genomes_project 18 67064616 67127544 - MGP_C3HHeJ_P0049626 Ptpn2 protein_coding protein_coding MGP_C3HHeJ_T0049627.1 MGP_C3HHeJ_G0024264.1 mouse_genomes_project 18 67064617 67127559 - MGP_C3HHeJ_P0049627 Ptpn2 protein_coding protein_coding MGP_C3HHeJ_T0049628.1 MGP_C3HHeJ_G0024264.1 mouse_genomes_project 18 67070329 67127566 - MGP_C3HHeJ_P0049628 Ptpn2 protein_coding protein_coding MGP_C3HHeJ_T0049629.1 MGP_C3HHeJ_G0024264.1 mouse_genomes_project 18 67074939 67091996 - Ptpn2 protein_coding processed_transcript MGP_C3HHeJ_T0017408.1 MGP_C3HHeJ_G0015127.1 mouse_genomes_project 18 48645251 48656127 - C030005K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017409.1 MGP_C3HHeJ_G0015127.1 mouse_genomes_project 18 48648674 48656311 - C030005K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017410.1 MGP_C3HHeJ_G0015127.1 mouse_genomes_project 18 48654744 48656311 - C030005K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017411.1 MGP_C3HHeJ_G0015127.1 mouse_genomes_project 18 48654764 48656072 - C030005K06Rik processed_transcript processed_transcript MGP_C3HHeJ_T0003764.1 MGP_C3HHeJ_G0003376.1 mouse_genomes_project 18 74121861 74129062 - 1700120E14Rik antisense antisense MGP_C3HHeJ_T0003765.1 MGP_C3HHeJ_G0003376.1 mouse_genomes_project 18 74121974 74129044 - 1700120E14Rik antisense antisense MGP_C3HHeJ_T0049496.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665749 60701811 + MGP_C3HHeJ_P0049496 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049497.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665788 60700054 + MGP_C3HHeJ_P0049497 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049498.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665793 60693866 + MGP_C3HHeJ_P0049498 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049499.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665793 60697381 + MGP_C3HHeJ_P0049499 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049500.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665803 60694012 + MGP_C3HHeJ_P0049500 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049501.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665810 60668714 + Csnk1a1 protein_coding retained_intron MGP_C3HHeJ_T0049502.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60665814 60699932 + MGP_C3HHeJ_P0049502 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049503.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60666164 60699281 + MGP_C3HHeJ_P0049503 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049504.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60686515 60693868 + MGP_C3HHeJ_P0049504 Csnk1a1 protein_coding protein_coding MGP_C3HHeJ_T0049505.1 MGP_C3HHeJ_G0024215.1 mouse_genomes_project 18 60694593 60698248 + Csnk1a1 protein_coding processed_transcript MGP_C3HHeJ_T0049511.1 MGP_C3HHeJ_G0024219.1 mouse_genomes_project 18 60843417 60906331 - MGP_C3HHeJ_P0049511 Afap1l1 protein_coding protein_coding MGP_C3HHeJ_T0049512.1 MGP_C3HHeJ_G0024219.1 mouse_genomes_project 18 60843417 60906240 - MGP_C3HHeJ_P0049512 Afap1l1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049513.1 MGP_C3HHeJ_G0024219.1 mouse_genomes_project 18 60844095 60906289 - Afap1l1 protein_coding retained_intron MGP_C3HHeJ_T0049097.1 MGP_C3HHeJ_G0024048.1 mouse_genomes_project 18 35534668 35537009 + MGP_C3HHeJ_P0049097 Pcdhb6 protein_coding protein_coding MGP_C3HHeJ_T0049098.1 MGP_C3HHeJ_G0024048.1 mouse_genomes_project 18 35534693 35538417 + MGP_C3HHeJ_P0049098 Pcdhb6 protein_coding protein_coding MGP_C3HHeJ_T0048945.1 MGP_C3HHeJ_G0023988.1 mouse_genomes_project 18 32992929 33009874 - MGP_C3HHeJ_P0048945 Hspa9 protein_coding protein_coding MGP_C3HHeJ_T0048946.1 MGP_C3HHeJ_G0023988.1 mouse_genomes_project 18 32993782 32994826 - Hspa9 protein_coding retained_intron MGP_C3HHeJ_T0048947.1 MGP_C3HHeJ_G0023988.1 mouse_genomes_project 18 32994211 32996380 - Hspa9 protein_coding retained_intron MGP_C3HHeJ_T0048948.1 MGP_C3HHeJ_G0023988.1 mouse_genomes_project 18 33003688 33007090 - Hspa9 protein_coding retained_intron MGP_C3HHeJ_T0099125.1 MGP_C3HHeJ_G0037319.1 mouse_genomes_project 18 50273356 50273482 - Gm25785 snRNA snRNA MGP_C3HHeJ_T0048699.1 MGP_C3HHeJ_G0023886.1 mouse_genomes_project 18 9347286 9394122 - MGP_C3HHeJ_P0048699 Npc1 protein_coding protein_coding MGP_C3HHeJ_T0048700.1 MGP_C3HHeJ_G0023886.1 mouse_genomes_project 18 9367968 9370139 - Npc1 protein_coding processed_transcript MGP_C3HHeJ_T0048701.1 MGP_C3HHeJ_G0023886.1 mouse_genomes_project 18 9375155 9394080 - Npc1 protein_coding retained_intron MGP_C3HHeJ_T0048702.1 MGP_C3HHeJ_G0023886.1 mouse_genomes_project 18 9375576 9394048 - Npc1 protein_coding retained_intron MGP_C3HHeJ_T0048703.1 MGP_C3HHeJ_G0023886.1 mouse_genomes_project 18 9379426 9381682 - Npc1 protein_coding processed_transcript MGP_C3HHeJ_T0003728.1 MGP_C3HHeJ_G0003351.1 mouse_genomes_project 18 18184676 18246745 - Gm16090 antisense antisense MGP_C3HHeJ_T0003721.1 MGP_C3HHeJ_G0003345.1 mouse_genomes_project 18 3066029 3079408 + Gm17036 antisense antisense MGP_C3HHeJ_T0101867.1 MGP_C3HHeJ_G0039832.1 mouse_genomes_project 19 9314936 9402390 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0051116.1 MGP_C3HHeJ_G0024742.1 mouse_genomes_project 19 25681840 25751228 - Rfx3 protein_coding processed_transcript MGP_C3HHeJ_T0051117.1 MGP_C3HHeJ_G0024742.1 mouse_genomes_project 19 25682154 25845849 - MGP_C3HHeJ_P0051117 Rfx3 protein_coding protein_coding MGP_C3HHeJ_T0051118.1 MGP_C3HHeJ_G0024742.1 mouse_genomes_project 19 25682154 25819216 - MGP_C3HHeJ_P0051118 Rfx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051119.1 MGP_C3HHeJ_G0024742.1 mouse_genomes_project 19 25719135 25935345 - Rfx3 protein_coding retained_intron MGP_C3HHeJ_T0051120.1 MGP_C3HHeJ_G0024742.1 mouse_genomes_project 19 25781734 25934969 - MGP_C3HHeJ_P0051120 Rfx3 protein_coding protein_coding MGP_C3HHeJ_T0050224.1 MGP_C3HHeJ_G0024433.1 mouse_genomes_project 19 2243834 2248704 - MGP_C3HHeJ_P0050224 Cst6 protein_coding protein_coding MGP_C3HHeJ_T0003804.1 MGP_C3HHeJ_G0003403.1 mouse_genomes_project 19 46706071 46717044 - Gm16068 antisense antisense MGP_C3HHeJ_T0100421.1 MGP_C3HHeJ_G0038615.1 mouse_genomes_project 19 42975514 42975660 - Gm24336 snoRNA snoRNA MGP_C3HHeJ_T0013254.1 MGP_C3HHeJ_G0011358.1 mouse_genomes_project 19 42104299 42105151 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100418.1 MGP_C3HHeJ_G0038612.1 mouse_genomes_project 19 34113173 34113306 - Gm25611 snoRNA snoRNA MGP_C3HHeJ_T0051925.1 MGP_C3HHeJ_G0025005.1 mouse_genomes_project 19 56992493 57032091 + MGP_C3HHeJ_P0051925 Trub1 protein_coding protein_coding MGP_C3HHeJ_T0051926.1 MGP_C3HHeJ_G0025005.1 mouse_genomes_project 19 56992493 57029949 + MGP_C3HHeJ_P0051926 Trub1 protein_coding protein_coding MGP_C3HHeJ_T0013244.1 MGP_C3HHeJ_G0011348.1 mouse_genomes_project 19 21389637 21390596 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050962.1 MGP_C3HHeJ_G0024674.1 mouse_genomes_project 19 10705662 10706607 - MGP_C3HHeJ_P0050962 protein_coding protein_coding MGP_C3HHeJ_T0050859.1 MGP_C3HHeJ_G0024613.1 mouse_genomes_project 19 8470955 8577168 + Ms4a4b protein_coding retained_intron MGP_C3HHeJ_T0050860.1 MGP_C3HHeJ_G0024613.1 mouse_genomes_project 19 8470960 8505485 + Ms4a4b protein_coding retained_intron MGP_C3HHeJ_T0050861.1 MGP_C3HHeJ_G0024613.1 mouse_genomes_project 19 8470975 8655594 + MGP_C3HHeJ_P0050861 Ms4a4b protein_coding protein_coding MGP_C3HHeJ_T0050862.1 MGP_C3HHeJ_G0024613.1 mouse_genomes_project 19 8496651 8498801 + Ms4a4b protein_coding retained_intron MGP_C3HHeJ_T0050863.1 MGP_C3HHeJ_G0024613.1 mouse_genomes_project 19 8496767 8498801 + Ms4a4b protein_coding processed_transcript MGP_C3HHeJ_T0050864.1 MGP_C3HHeJ_G0024613.1 mouse_genomes_project 19 8498001 8498801 + Ms4a4b protein_coding retained_intron MGP_C3HHeJ_T0051031.1 MGP_C3HHeJ_G0024709.1 mouse_genomes_project 19 18379876 18573942 - MGP_C3HHeJ_P0051031 Tmc1 protein_coding protein_coding MGP_C3HHeJ_T0050858.1 MGP_C3HHeJ_G0024612.1 mouse_genomes_project 19 8421187 8434329 + MGP_C3HHeJ_P0050858 protein_coding protein_coding MGP_C3HHeJ_T0013228.1 MGP_C3HHeJ_G0011332.1 mouse_genomes_project 19 4746542 4747658 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050636.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862532 5877226 + MGP_C3HHeJ_P0050636 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050637.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862532 5876748 + MGP_C3HHeJ_P0050637 Stx5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050638.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862589 5863790 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050639.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862598 5876285 + MGP_C3HHeJ_P0050639 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050640.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862607 5876764 + MGP_C3HHeJ_P0050640 Stx5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050641.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862608 5876804 + MGP_C3HHeJ_P0050641 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050642.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862631 5865646 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050643.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862788 5863980 + MGP_C3HHeJ_P0050643 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050644.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862922 5876804 + MGP_C3HHeJ_P0050644 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050645.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5862926 5870892 + MGP_C3HHeJ_P0050645 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050646.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5863007 5876804 + MGP_C3HHeJ_P0050646 Stx5a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050647.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5863263 5870008 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050648.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5863979 5870239 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050649.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5869523 5876230 + MGP_C3HHeJ_P0050649 Stx5a protein_coding protein_coding MGP_C3HHeJ_T0050650.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5869622 5876220 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050651.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5869637 5870833 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050652.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5869652 5876146 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050653.1 MGP_C3HHeJ_G0024540.1 mouse_genomes_project 19 5869709 5870498 + Stx5a protein_coding retained_intron MGP_C3HHeJ_T0050384.1 MGP_C3HHeJ_G0024481.1 mouse_genomes_project 19 3052897 3059693 + MGP_C3HHeJ_P0050384 Cdca5 protein_coding protein_coding MGP_C3HHeJ_T0050385.1 MGP_C3HHeJ_G0024481.1 mouse_genomes_project 19 3053665 3059693 + Cdca5 protein_coding processed_transcript MGP_C3HHeJ_T0050386.1 MGP_C3HHeJ_G0024481.1 mouse_genomes_project 19 3053741 3059693 + Cdca5 protein_coding processed_transcript MGP_C3HHeJ_T0051524.1 MGP_C3HHeJ_G0024883.1 mouse_genomes_project 19 42327899 42353303 - MGP_C3HHeJ_P0051524 Got1 protein_coding protein_coding MGP_C3HHeJ_T0051525.1 MGP_C3HHeJ_G0024883.1 mouse_genomes_project 19 42328168 42344113 - MGP_C3HHeJ_P0051525 Got1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051526.1 MGP_C3HHeJ_G0024883.1 mouse_genomes_project 19 42328464 42332911 - Got1 protein_coding retained_intron MGP_C3HHeJ_T0051527.1 MGP_C3HHeJ_G0024883.1 mouse_genomes_project 19 42340337 42353183 - Got1 protein_coding processed_transcript MGP_C3HHeJ_T0100427.1 MGP_C3HHeJ_G0038621.1 mouse_genomes_project 19 60688450 60688579 - Gm22520 snoRNA snoRNA MGP_C3HHeJ_T0051522.1 MGP_C3HHeJ_G0024882.1 mouse_genomes_project 19 42267032 42325358 + MGP_C3HHeJ_P0051522 Cnnm1 protein_coding protein_coding MGP_C3HHeJ_T0051523.1 MGP_C3HHeJ_G0024882.1 mouse_genomes_project 19 42267041 42325313 + MGP_C3HHeJ_P0051523 Cnnm1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051454.1 MGP_C3HHeJ_G0024862.1 mouse_genomes_project 19 40683875 40693992 - MGP_C3HHeJ_P0051454 Exosc1 protein_coding protein_coding MGP_C3HHeJ_T0051455.1 MGP_C3HHeJ_G0024862.1 mouse_genomes_project 19 40683875 40693992 - MGP_C3HHeJ_P0051455 Exosc1 protein_coding protein_coding MGP_C3HHeJ_T0051657.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45022666 45036348 - MGP_C3HHeJ_P0051657 Ldb1 protein_coding protein_coding MGP_C3HHeJ_T0051658.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45022667 45030746 - MGP_C3HHeJ_P0051658 Ldb1 protein_coding protein_coding MGP_C3HHeJ_T0051659.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45022689 45036345 - MGP_C3HHeJ_P0051659 Ldb1 protein_coding protein_coding MGP_C3HHeJ_T0051660.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45022762 45036344 - MGP_C3HHeJ_P0051660 Ldb1 protein_coding protein_coding MGP_C3HHeJ_T0051661.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45022762 45036048 - MGP_C3HHeJ_P0051661 Ldb1 protein_coding protein_coding MGP_C3HHeJ_T0051662.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45023818 45024952 - Ldb1 protein_coding retained_intron MGP_C3HHeJ_T0051663.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45024042 45035988 - MGP_C3HHeJ_P0051663 Ldb1 protein_coding protein_coding MGP_C3HHeJ_T0051664.1 MGP_C3HHeJ_G0024928.1 mouse_genomes_project 19 45024124 45026074 - Ldb1 protein_coding retained_intron MGP_C3HHeJ_T0000987.1 MGP_C3HHeJ_G0000924.1 mouse_genomes_project 19 35891546 35893294 - TEC TEC MGP_C3HHeJ_T0050078.1 MGP_C3HHeJ_G0024382.1 mouse_genomes_project 19 957261 961621 - MGP_C3HHeJ_P0050078 Cabp4 protein_coding protein_coding MGP_C3HHeJ_T0050835.1 MGP_C3HHeJ_G0024604.1 mouse_genomes_project 19 8154180 8180388 - MGP_C3HHeJ_P0050835 1700025F22Rik protein_coding protein_coding MGP_C3HHeJ_T0050836.1 MGP_C3HHeJ_G0024604.1 mouse_genomes_project 19 8154180 8173440 - MGP_C3HHeJ_P0050836 1700025F22Rik protein_coding protein_coding MGP_C3HHeJ_T0050837.1 MGP_C3HHeJ_G0024604.1 mouse_genomes_project 19 8154180 8180374 - MGP_C3HHeJ_P0050837 1700025F22Rik protein_coding protein_coding MGP_C3HHeJ_T0050838.1 MGP_C3HHeJ_G0024604.1 mouse_genomes_project 19 8154180 8180374 - MGP_C3HHeJ_P0050838 1700025F22Rik protein_coding protein_coding MGP_C3HHeJ_T0050572.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4310357 4376390 - MGP_C3HHeJ_P0050572 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050573.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4310360 4376987 - MGP_C3HHeJ_P0050573 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050574.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4311697 4376967 - MGP_C3HHeJ_P0050574 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050575.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4311723 4376361 - MGP_C3HHeJ_P0050575 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050576.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4311813 4318015 - MGP_C3HHeJ_P0050576 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050577.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4311813 4376972 - MGP_C3HHeJ_P0050577 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050578.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4311816 4313059 - Mark2 protein_coding retained_intron MGP_C3HHeJ_T0050579.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4312054 4376390 - MGP_C3HHeJ_P0050579 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050580.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4312244 4318030 - MGP_C3HHeJ_P0050580 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050581.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4312409 4318143 - MGP_C3HHeJ_P0050581 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050582.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4313466 4318482 - MGP_C3HHeJ_P0050582 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050583.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4314124 4316906 - MGP_C3HHeJ_P0050583 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050584.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4316001 4318075 - MGP_C3HHeJ_P0050584 Mark2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050585.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4318101 4319743 - Mark2 protein_coding retained_intron MGP_C3HHeJ_T0050586.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4319721 4322328 - Mark2 protein_coding retained_intron MGP_C3HHeJ_T0050587.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4320784 4377028 - MGP_C3HHeJ_P0050587 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050588.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4322301 4376772 - MGP_C3HHeJ_P0050588 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050589.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4325303 4376810 - MGP_C3HHeJ_P0050589 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050590.1 MGP_C3HHeJ_G0024523.1 mouse_genomes_project 19 4325632 4376980 - MGP_C3HHeJ_P0050590 Mark2 protein_coding protein_coding MGP_C3HHeJ_T0050950.1 MGP_C3HHeJ_G0024662.1 mouse_genomes_project 19 10205402 10206335 + MGP_C3HHeJ_P0050950 Olfr1451 protein_coding protein_coding MGP_C3HHeJ_T0051606.1 MGP_C3HHeJ_G0024911.1 mouse_genomes_project 19 43916289 43922327 + MGP_C3HHeJ_P0051606 Peo1 protein_coding protein_coding MGP_C3HHeJ_T0051147.1 MGP_C3HHeJ_G0024748.1 mouse_genomes_project 19 26988975 27017379 - MGP_C3HHeJ_P0051147 Ak3 protein_coding protein_coding MGP_C3HHeJ_T0051148.1 MGP_C3HHeJ_G0024748.1 mouse_genomes_project 19 26994043 26995387 - MGP_C3HHeJ_P0051148 Ak3 protein_coding protein_coding MGP_C3HHeJ_T0050701.1 MGP_C3HHeJ_G0024552.1 mouse_genomes_project 19 6017535 6026683 + MGP_C3HHeJ_P0050701 Lbhd1 protein_coding protein_coding MGP_C3HHeJ_T0050702.1 MGP_C3HHeJ_G0024552.1 mouse_genomes_project 19 6017727 6020845 + Lbhd1 protein_coding retained_intron MGP_C3HHeJ_T0050703.1 MGP_C3HHeJ_G0024552.1 mouse_genomes_project 19 6017733 6021062 + MGP_C3HHeJ_P0050703 Lbhd1 protein_coding protein_coding MGP_C3HHeJ_T0050893.1 MGP_C3HHeJ_G0024623.1 mouse_genomes_project 19 8796576 8812269 + MGP_C3HHeJ_P0050893 Oosp3 protein_coding protein_coding MGP_C3HHeJ_T0050894.1 MGP_C3HHeJ_G0024623.1 mouse_genomes_project 19 8796599 8812285 + MGP_C3HHeJ_P0050894 Oosp3 protein_coding protein_coding MGP_C3HHeJ_T0050223.1 MGP_C3HHeJ_G0024432.1 mouse_genomes_project 19 2234857 2243283 + MGP_C3HHeJ_P0050223 Catsper1 protein_coding protein_coding MGP_C3HHeJ_T0101385.1 MGP_C3HHeJ_G0039438.1 mouse_genomes_project 19 58293431 58295838 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101386.1 MGP_C3HHeJ_G0039438.1 mouse_genomes_project 19 58293431 58293845 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101387.1 MGP_C3HHeJ_G0039438.1 mouse_genomes_project 19 58293596 58311136 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0050038.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 816700 817216 - Ndufv1 protein_coding retained_intron MGP_C3HHeJ_T0050039.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 816701 821820 - MGP_C3HHeJ_P0050039 Ndufv1 protein_coding protein_coding MGP_C3HHeJ_T0050040.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 816759 821871 - MGP_C3HHeJ_P0050040 Ndufv1 protein_coding protein_coding MGP_C3HHeJ_T0050041.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 817492 819045 - Ndufv1 protein_coding retained_intron MGP_C3HHeJ_T0050042.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 817562 818338 - Ndufv1 protein_coding retained_intron MGP_C3HHeJ_T0050043.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 817950 821902 - Ndufv1 protein_coding retained_intron MGP_C3HHeJ_T0050044.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 818564 821906 - MGP_C3HHeJ_P0050044 Ndufv1 protein_coding protein_coding MGP_C3HHeJ_T0050045.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 818615 821863 - MGP_C3HHeJ_P0050045 Ndufv1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050046.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 818659 821957 - MGP_C3HHeJ_P0050046 Ndufv1 protein_coding protein_coding MGP_C3HHeJ_T0050047.1 MGP_C3HHeJ_G0024374.1 mouse_genomes_project 19 819198 821859 - Ndufv1 protein_coding retained_intron MGP_C3HHeJ_T0051541.1 MGP_C3HHeJ_G0024889.1 mouse_genomes_project 19 42627557 42686129 + MGP_C3HHeJ_P0051541 Abcc2 protein_coding protein_coding MGP_C3HHeJ_T0051542.1 MGP_C3HHeJ_G0024889.1 mouse_genomes_project 19 42627691 42630012 + Abcc2 protein_coding retained_intron MGP_C3HHeJ_T0051543.1 MGP_C3HHeJ_G0024889.1 mouse_genomes_project 19 42627769 42685315 + MGP_C3HHeJ_P0051543 Abcc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051544.1 MGP_C3HHeJ_G0024889.1 mouse_genomes_project 19 42644841 42647625 + Abcc2 protein_coding retained_intron MGP_C3HHeJ_T0051545.1 MGP_C3HHeJ_G0024889.1 mouse_genomes_project 19 42657976 42660856 + Abcc2 protein_coding retained_intron MGP_C3HHeJ_T0051058.1 MGP_C3HHeJ_G0024718.1 mouse_genomes_project 19 20907904 20985630 - MGP_C3HHeJ_P0051058 Smc5 protein_coding protein_coding MGP_C3HHeJ_T0051059.1 MGP_C3HHeJ_G0024718.1 mouse_genomes_project 19 20910286 20916656 - MGP_C3HHeJ_P0051059 Smc5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0013238.1 MGP_C3HHeJ_G0011342.1 mouse_genomes_project 19 11363585 11364374 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050787.1 MGP_C3HHeJ_G0024588.1 mouse_genomes_project 19 7669207 7691326 - MGP_C3HHeJ_P0050787 Pga5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050788.1 MGP_C3HHeJ_G0024588.1 mouse_genomes_project 19 7669211 7679730 - MGP_C3HHeJ_P0050788 Pga5 protein_coding protein_coding MGP_C3HHeJ_T0099150.1 MGP_C3HHeJ_G0037344.1 mouse_genomes_project 19 10539216 10539323 - Gm22443 snRNA snRNA MGP_C3HHeJ_T0051962.1 MGP_C3HHeJ_G0025024.1 mouse_genomes_project 19 60190915 60251414 - MGP_C3HHeJ_P0051962 Cacul1 protein_coding protein_coding MGP_C3HHeJ_T0051963.1 MGP_C3HHeJ_G0025024.1 mouse_genomes_project 19 60190915 60251414 - MGP_C3HHeJ_P0051963 Cacul1 protein_coding protein_coding MGP_C3HHeJ_T0051964.1 MGP_C3HHeJ_G0025024.1 mouse_genomes_project 19 60190915 60251414 - MGP_C3HHeJ_P0051964 Cacul1 protein_coding protein_coding MGP_C3HHeJ_T0051957.1 MGP_C3HHeJ_G0025021.1 mouse_genomes_project 19 59537077 59579801 - MGP_C3HHeJ_P0051957 Rab11fip2 protein_coding protein_coding MGP_C3HHeJ_T0051958.1 MGP_C3HHeJ_G0025021.1 mouse_genomes_project 19 59537888 59579512 - MGP_C3HHeJ_P0051958 Rab11fip2 protein_coding protein_coding MGP_C3HHeJ_T0051959.1 MGP_C3HHeJ_G0025021.1 mouse_genomes_project 19 59541108 59579148 - MGP_C3HHeJ_P0051959 Rab11fip2 protein_coding protein_coding MGP_C3HHeJ_T0050273.1 MGP_C3HHeJ_G0024450.1 mouse_genomes_project 19 2483428 2486616 + MGP_C3HHeJ_P0050273 Ap5b1 protein_coding protein_coding MGP_C3HHeJ_T0051738.1 MGP_C3HHeJ_G0024951.1 mouse_genomes_project 19 46105385 46122981 - MGP_C3HHeJ_P0051738 Pcgf6 protein_coding protein_coding MGP_C3HHeJ_T0050729.1 MGP_C3HHeJ_G0024562.1 mouse_genomes_project 19 6130810 6231532 + MGP_C3HHeJ_P0050729 Ahnak protein_coding protein_coding MGP_C3HHeJ_T0050730.1 MGP_C3HHeJ_G0024562.1 mouse_genomes_project 19 6144169 6165738 + MGP_C3HHeJ_P0050730 Ahnak protein_coding protein_coding MGP_C3HHeJ_T0051726.1 MGP_C3HHeJ_G0024945.1 mouse_genomes_project 19 45707318 45713134 - MGP_C3HHeJ_P0051726 Cyp17a1 protein_coding protein_coding MGP_C3HHeJ_T0051727.1 MGP_C3HHeJ_G0024945.1 mouse_genomes_project 19 45708240 45709663 - Cyp17a1 protein_coding retained_intron MGP_C3HHeJ_T0051728.1 MGP_C3HHeJ_G0024945.1 mouse_genomes_project 19 45710875 45711441 - Cyp17a1 protein_coding retained_intron MGP_C3HHeJ_T0017493.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35005380 35099247 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017494.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35010742 35082963 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017495.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35010754 35017348 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017496.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35010759 35017328 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017497.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35035860 35052290 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017498.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35037997 35082757 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017499.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35052133 35082816 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017500.1 MGP_C3HHeJ_G0015150.1 mouse_genomes_project 19 35052302 35082812 - 1500017E21Rik processed_transcript processed_transcript MGP_C3HHeJ_T0010202.1 MGP_C3HHeJ_G0008335.1 mouse_genomes_project 19 3242283 3242369 + Mir194-2 miRNA miRNA MGP_C3HHeJ_T0051186.1 MGP_C3HHeJ_G0024761.1 mouse_genomes_project 19 27924906 27961658 + MGP_C3HHeJ_P0051186 Il33 protein_coding protein_coding MGP_C3HHeJ_T0051187.1 MGP_C3HHeJ_G0024761.1 mouse_genomes_project 19 27924907 27952256 + MGP_C3HHeJ_P0051187 Il33 protein_coding protein_coding MGP_C3HHeJ_T0051188.1 MGP_C3HHeJ_G0024761.1 mouse_genomes_project 19 27924924 27959915 + MGP_C3HHeJ_P0051188 Il33 protein_coding protein_coding MGP_C3HHeJ_T0051189.1 MGP_C3HHeJ_G0024761.1 mouse_genomes_project 19 27945974 27961644 + MGP_C3HHeJ_P0051189 Il33 protein_coding protein_coding MGP_C3HHeJ_T0051190.1 MGP_C3HHeJ_G0024761.1 mouse_genomes_project 19 27951994 27952992 + MGP_C3HHeJ_P0051190 Il33 protein_coding protein_coding MGP_C3HHeJ_T0051613.1 MGP_C3HHeJ_G0024914.1 mouse_genomes_project 19 43969514 43985730 + MGP_C3HHeJ_P0051613 Sfxn3 protein_coding protein_coding MGP_C3HHeJ_T0051614.1 MGP_C3HHeJ_G0024914.1 mouse_genomes_project 19 43969514 43985730 + MGP_C3HHeJ_P0051614 Sfxn3 protein_coding protein_coding MGP_C3HHeJ_T0051615.1 MGP_C3HHeJ_G0024914.1 mouse_genomes_project 19 43969514 43985730 + MGP_C3HHeJ_P0051615 Sfxn3 protein_coding protein_coding MGP_C3HHeJ_T0051836.1 MGP_C3HHeJ_G0024990.1 mouse_genomes_project 19 54749314 55068221 + MGP_C3HHeJ_P0051836 Vti1a protein_coding protein_coding MGP_C3HHeJ_T0051837.1 MGP_C3HHeJ_G0024990.1 mouse_genomes_project 19 54749414 55068976 + MGP_C3HHeJ_P0051837 Vti1a protein_coding unknown_likely_coding MGP_C3HHeJ_T0051335.1 MGP_C3HHeJ_G0024817.1 mouse_genomes_project 19 36173072 36176794 + MGP_C3HHeJ_P0051335 Cyp26a1 protein_coding protein_coding MGP_C3HHeJ_T0010234.1 MGP_C3HHeJ_G0008367.1 mouse_genomes_project 19 43711094 43711218 + Mir6405 miRNA miRNA MGP_C3HHeJ_T0010215.1 MGP_C3HHeJ_G0008348.1 mouse_genomes_project 19 13723313 13723426 - Mir496b miRNA miRNA MGP_C3HHeJ_T0050987.1 MGP_C3HHeJ_G0024692.1 mouse_genomes_project 19 13537104 13793735 + MGP_C3HHeJ_P0050987 Gnaq protein_coding protein_coding MGP_C3HHeJ_T0050988.1 MGP_C3HHeJ_G0024692.1 mouse_genomes_project 19 13537569 13724949 + Gnaq protein_coding retained_intron MGP_C3HHeJ_T0050989.1 MGP_C3HHeJ_G0024692.1 mouse_genomes_project 19 13624928 13725696 + Gnaq protein_coding processed_transcript MGP_C3HHeJ_T0050895.1 MGP_C3HHeJ_G0024624.1 mouse_genomes_project 19 8845840 8863034 + MGP_C3HHeJ_P0050895 Gif protein_coding protein_coding MGP_C3HHeJ_T0101513.1 MGP_C3HHeJ_G0039497.1 mouse_genomes_project 19 45350628 45352750 - unitary_pseudogene processed_transcript MGP_C3HHeJ_T0101514.1 MGP_C3HHeJ_G0039497.1 mouse_genomes_project 19 45351326 45352750 - unitary_pseudogene unitary_pseudogene MGP_C3HHeJ_T0051273.1 MGP_C3HHeJ_G0024797.1 mouse_genomes_project 19 32960822 32969879 + MGP_C3HHeJ_P0051273 Ifit1 protein_coding protein_coding MGP_C3HHeJ_T0051377.1 MGP_C3HHeJ_G0024834.1 mouse_genomes_project 19 37922606 37996294 - MGP_C3HHeJ_P0051377 Cyp2c38 protein_coding protein_coding MGP_C3HHeJ_T0050890.1 MGP_C3HHeJ_G0024622.1 mouse_genomes_project 19 8772373 8790672 - MGP_C3HHeJ_P0050890 Oosp1 protein_coding protein_coding MGP_C3HHeJ_T0050891.1 MGP_C3HHeJ_G0024622.1 mouse_genomes_project 19 8772448 8790550 - MGP_C3HHeJ_P0050891 Oosp1 protein_coding protein_coding MGP_C3HHeJ_T0050892.1 MGP_C3HHeJ_G0024622.1 mouse_genomes_project 19 8772586 8790556 - MGP_C3HHeJ_P0050892 Oosp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100420.1 MGP_C3HHeJ_G0038614.1 mouse_genomes_project 19 41481514 41481640 - Gm25216 snoRNA snoRNA MGP_C3HHeJ_T0051385.1 MGP_C3HHeJ_G0024840.1 mouse_genomes_project 19 38816854 38858742 - MGP_C3HHeJ_P0051385 Cyp2c70 protein_coding protein_coding MGP_C3HHeJ_T0051386.1 MGP_C3HHeJ_G0024840.1 mouse_genomes_project 19 38817077 38858553 - MGP_C3HHeJ_P0051386 Cyp2c70 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051387.1 MGP_C3HHeJ_G0024840.1 mouse_genomes_project 19 38827760 38858742 - MGP_C3HHeJ_P0051387 Cyp2c70 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051388.1 MGP_C3HHeJ_G0024840.1 mouse_genomes_project 19 38828835 38858742 - MGP_C3HHeJ_P0051388 Cyp2c70 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051389.1 MGP_C3HHeJ_G0024840.1 mouse_genomes_project 19 38845936 38858789 - Cyp2c70 protein_coding retained_intron MGP_C3HHeJ_T0050948.1 MGP_C3HHeJ_G0024660.1 mouse_genomes_project 19 10144637 10145585 + MGP_C3HHeJ_P0050948 Olfr1449 protein_coding protein_coding MGP_C3HHeJ_T0051374.1 MGP_C3HHeJ_G0024833.1 mouse_genomes_project 19 37820503 37885476 + MGP_C3HHeJ_P0051374 Cyp2c29 protein_coding protein_coding MGP_C3HHeJ_T0051375.1 MGP_C3HHeJ_G0024833.1 mouse_genomes_project 19 37833497 37885527 + MGP_C3HHeJ_P0051375 Cyp2c29 protein_coding protein_coding MGP_C3HHeJ_T0051376.1 MGP_C3HHeJ_G0024833.1 mouse_genomes_project 19 37833497 37885541 + MGP_C3HHeJ_P0051376 Cyp2c29 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051548.1 MGP_C3HHeJ_G0024891.1 mouse_genomes_project 19 42806523 42842636 - MGP_C3HHeJ_P0051548 Cpn1 protein_coding protein_coding MGP_C3HHeJ_T0051549.1 MGP_C3HHeJ_G0024891.1 mouse_genomes_project 19 42812864 42820533 - Cpn1 protein_coding retained_intron MGP_C3HHeJ_T0051683.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45148629 45286974 + MGP_C3HHeJ_P0051683 Gbf1 protein_coding protein_coding MGP_C3HHeJ_T0051684.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45148650 45256551 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0051685.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45148668 45268743 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0051686.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45148693 45246194 + Gbf1 protein_coding processed_transcript MGP_C3HHeJ_T0051687.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45246094 45286973 + MGP_C3HHeJ_P0051687 Gbf1 protein_coding protein_coding MGP_C3HHeJ_T0051688.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45254620 45260320 + MGP_C3HHeJ_P0051688 Gbf1 protein_coding protein_coding MGP_C3HHeJ_T0051690.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45269349 45271264 + Gbf1 protein_coding processed_transcript MGP_C3HHeJ_T0051691.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45270270 45273934 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0051692.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45280336 45281473 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0051693.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45280643 45284146 + MGP_C3HHeJ_P0051693 Gbf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051694.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45280798 45283949 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0051695.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45283306 45284490 + Gbf1 protein_coding processed_transcript MGP_C3HHeJ_T0051696.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45283464 45284404 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0051697.1 MGP_C3HHeJ_G0024933.1 mouse_genomes_project 19 45285026 45286444 + Gbf1 protein_coding retained_intron MGP_C3HHeJ_T0010220.1 MGP_C3HHeJ_G0008353.1 mouse_genomes_project 19 28280703 28280780 - Gm24108 miRNA miRNA MGP_C3HHeJ_T0017456.1 MGP_C3HHeJ_G0015140.1 mouse_genomes_project 19 3393914 3403125 - Gm14965 processed_transcript antisense MGP_C3HHeJ_T0017457.1 MGP_C3HHeJ_G0015140.1 mouse_genomes_project 19 3401328 3403125 - Gm14965 processed_transcript retained_intron MGP_C3HHeJ_T0051277.1 MGP_C3HHeJ_G0024800.1 mouse_genomes_project 19 33255711 33312494 + MGP_C3HHeJ_P0051277 Kif20b protein_coding unknown_likely_coding MGP_C3HHeJ_T0051278.1 MGP_C3HHeJ_G0024800.1 mouse_genomes_project 19 33255749 33312655 + MGP_C3HHeJ_P0051278 Kif20b protein_coding protein_coding MGP_C3HHeJ_T0007022.1 MGP_C3HHeJ_G0005759.1 mouse_genomes_project 19 49869997 49979591 + Gm26629 lincRNA lincRNA MGP_C3HHeJ_T0050796.1 MGP_C3HHeJ_G0024592.1 mouse_genomes_project 19 7845729 7849374 + Slc15a3 protein_coding processed_transcript MGP_C3HHeJ_T0050797.1 MGP_C3HHeJ_G0024592.1 mouse_genomes_project 19 7848546 7863773 + MGP_C3HHeJ_P0050797 Slc15a3 protein_coding protein_coding MGP_C3HHeJ_T0050798.1 MGP_C3HHeJ_G0024592.1 mouse_genomes_project 19 7848552 7849498 + Slc15a3 protein_coding processed_transcript MGP_C3HHeJ_T0050799.1 MGP_C3HHeJ_G0024592.1 mouse_genomes_project 19 7848921 7865220 + Slc15a3 protein_coding retained_intron MGP_C3HHeJ_T0050557.1 MGP_C3HHeJ_G0024515.1 mouse_genomes_project 19 4005641 4008555 + MGP_C3HHeJ_P0050557 Trpt1 protein_coding protein_coding MGP_C3HHeJ_T0050768.1 MGP_C3HHeJ_G0024577.1 mouse_genomes_project 19 7370618 7437267 + MGP_C3HHeJ_P0050768 Syt7 protein_coding protein_coding MGP_C3HHeJ_T0050769.1 MGP_C3HHeJ_G0024577.1 mouse_genomes_project 19 7370618 7437267 + MGP_C3HHeJ_P0050769 Syt7 protein_coding protein_coding MGP_C3HHeJ_T0050770.1 MGP_C3HHeJ_G0024577.1 mouse_genomes_project 19 7370618 7437267 + MGP_C3HHeJ_P0050770 Syt7 protein_coding protein_coding MGP_C3HHeJ_T0050771.1 MGP_C3HHeJ_G0024577.1 mouse_genomes_project 19 7371009 7405839 + MGP_C3HHeJ_P0050771 Syt7 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051048.1 MGP_C3HHeJ_G0024714.1 mouse_genomes_project 19 19289540 19323052 + MGP_C3HHeJ_P0051048 Abhd17b protein_coding protein_coding MGP_C3HHeJ_T0050679.1 MGP_C3HHeJ_G0024543.1 mouse_genomes_project 19 5915813 5923056 - MGP_C3HHeJ_P0050679 Polr2g protein_coding protein_coding MGP_C3HHeJ_T0051029.1 MGP_C3HHeJ_G0024707.1 mouse_genomes_project 19 18205707 18248036 + MGP_C3HHeJ_P0051029 Aldh1a1 protein_coding protein_coding MGP_C3HHeJ_T0051014.1 MGP_C3HHeJ_G0024703.1 mouse_genomes_project 19 16225762 16230957 + MGP_C3HHeJ_P0051014 D030056L22Rik protein_coding protein_coding MGP_C3HHeJ_T0051015.1 MGP_C3HHeJ_G0024703.1 mouse_genomes_project 19 16225805 16230957 + MGP_C3HHeJ_P0051015 D030056L22Rik protein_coding protein_coding MGP_C3HHeJ_T0051330.1 MGP_C3HHeJ_G0024813.1 mouse_genomes_project 19 35825542 35879785 + MGP_C3HHeJ_P0051330 Kif11 protein_coding protein_coding MGP_C3HHeJ_T0051331.1 MGP_C3HHeJ_G0024813.1 mouse_genomes_project 19 35825733 35878316 + MGP_C3HHeJ_P0051331 Kif11 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051895.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56418252 56515440 - MGP_C3HHeJ_P0051895 Afap1l2 protein_coding protein_coding MGP_C3HHeJ_T0051896.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56418252 56515422 - MGP_C3HHeJ_P0051896 Afap1l2 protein_coding protein_coding MGP_C3HHeJ_T0051897.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56418252 56515410 - MGP_C3HHeJ_P0051897 Afap1l2 protein_coding protein_coding MGP_C3HHeJ_T0051898.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56419273 56515378 - MGP_C3HHeJ_P0051898 Afap1l2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051899.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56426288 56434451 - Afap1l2 protein_coding retained_intron MGP_C3HHeJ_T0051900.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56429437 56515440 - MGP_C3HHeJ_P0051900 Afap1l2 protein_coding protein_coding MGP_C3HHeJ_T0051901.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56435959 56507567 - MGP_C3HHeJ_P0051901 Afap1l2 protein_coding protein_coding MGP_C3HHeJ_T0051902.1 MGP_C3HHeJ_G0025002.1 mouse_genomes_project 19 56448438 56515420 - Afap1l2 protein_coding retained_intron MGP_C3HHeJ_T0003809.1 MGP_C3HHeJ_G0003408.1 mouse_genomes_project 19 59049149 59084050 - Emx2os antisense antisense MGP_C3HHeJ_T0051506.1 MGP_C3HHeJ_G0024878.1 mouse_genomes_project 19 41368762 41387468 - MGP_C3HHeJ_P0051506 Loxl4 protein_coding protein_coding MGP_C3HHeJ_T0051507.1 MGP_C3HHeJ_G0024878.1 mouse_genomes_project 19 41369886 41387468 - MGP_C3HHeJ_P0051507 Loxl4 protein_coding protein_coding MGP_C3HHeJ_T0051508.1 MGP_C3HHeJ_G0024878.1 mouse_genomes_project 19 41370114 41383290 - MGP_C3HHeJ_P0051508 Loxl4 protein_coding protein_coding MGP_C3HHeJ_T0051509.1 MGP_C3HHeJ_G0024878.1 mouse_genomes_project 19 41376333 41378112 - Loxl4 protein_coding processed_transcript MGP_C3HHeJ_T0051510.1 MGP_C3HHeJ_G0024878.1 mouse_genomes_project 19 41382388 41387427 - MGP_C3HHeJ_P0051510 Loxl4 protein_coding protein_coding MGP_C3HHeJ_T0050818.1 MGP_C3HHeJ_G0024596.1 mouse_genomes_project 19 7924929 7926933 - MGP_C3HHeJ_P0050818 Zp1 protein_coding protein_coding MGP_C3HHeJ_T0050819.1 MGP_C3HHeJ_G0024596.1 mouse_genomes_project 19 7924931 7931268 - MGP_C3HHeJ_P0050819 Zp1 protein_coding protein_coding MGP_C3HHeJ_T0050751.1 MGP_C3HHeJ_G0024573.1 mouse_genomes_project 19 7173383 7178900 - MGP_C3HHeJ_P0050751 Fen1 protein_coding protein_coding MGP_C3HHeJ_T0050752.1 MGP_C3HHeJ_G0024573.1 mouse_genomes_project 19 7173389 7178673 - MGP_C3HHeJ_P0050752 Fen1 protein_coding protein_coding MGP_C3HHeJ_T0050753.1 MGP_C3HHeJ_G0024573.1 mouse_genomes_project 19 7173389 7178799 - MGP_C3HHeJ_P0050753 Fen1 protein_coding protein_coding MGP_C3HHeJ_T0050754.1 MGP_C3HHeJ_G0024573.1 mouse_genomes_project 19 7173393 7178624 - MGP_C3HHeJ_P0050754 Fen1 protein_coding protein_coding MGP_C3HHeJ_T0050824.1 MGP_C3HHeJ_G0024599.1 mouse_genomes_project 19 7972032 7984410 - MGP_C3HHeJ_P0050824 Ms4a10 protein_coding protein_coding MGP_C3HHeJ_T0050825.1 MGP_C3HHeJ_G0024599.1 mouse_genomes_project 19 7972036 7984385 - MGP_C3HHeJ_P0050825 Ms4a10 protein_coding protein_coding MGP_C3HHeJ_T0050826.1 MGP_C3HHeJ_G0024599.1 mouse_genomes_project 19 7972039 7975596 - MGP_C3HHeJ_P0050826 Ms4a10 protein_coding protein_coding MGP_C3HHeJ_T0003769.1 MGP_C3HHeJ_G0003380.1 mouse_genomes_project 19 809041 809516 - Gm16312 antisense antisense MGP_C3HHeJ_T0051928.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 57798139 58029012 - MGP_C3HHeJ_P0051928 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051929.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 57798147 58028206 - MGP_C3HHeJ_P0051929 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051930.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 57799227 58028080 - MGP_C3HHeJ_P0051930 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051931.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 57800693 58028915 - MGP_C3HHeJ_P0051931 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051932.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 57800693 58028973 - MGP_C3HHeJ_P0051932 Gfra1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051933.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 58026949 58028620 - MGP_C3HHeJ_P0051933 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051934.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 58026966 58029523 - MGP_C3HHeJ_P0051934 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051935.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 58027035 58028234 - MGP_C3HHeJ_P0051935 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0051936.1 MGP_C3HHeJ_G0025007.1 mouse_genomes_project 19 58027937 58028775 - MGP_C3HHeJ_P0051936 Gfra1 protein_coding protein_coding MGP_C3HHeJ_T0050905.1 MGP_C3HHeJ_G0024632.1 mouse_genomes_project 19 9249078 9250016 - MGP_C3HHeJ_P0050905 Olfr1427 protein_coding protein_coding MGP_C3HHeJ_T0101866.1 MGP_C3HHeJ_G0039831.1 mouse_genomes_project 19 8671411 8675076 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0051804.1 MGP_C3HHeJ_G0024974.1 mouse_genomes_project 19 52432042 52551730 + MGP_C3HHeJ_P0051804 Add3 protein_coding protein_coding MGP_C3HHeJ_T0051805.1 MGP_C3HHeJ_G0024974.1 mouse_genomes_project 19 52434353 52551730 + MGP_C3HHeJ_P0051805 Add3 protein_coding protein_coding MGP_C3HHeJ_T0051806.1 MGP_C3HHeJ_G0024974.1 mouse_genomes_project 19 52435586 52551730 + MGP_C3HHeJ_P0051806 Add3 protein_coding protein_coding MGP_C3HHeJ_T0051426.1 MGP_C3HHeJ_G0024847.1 mouse_genomes_project 19 39617823 39642009 + MGP_C3HHeJ_P0051426 Zfp518a protein_coding protein_coding MGP_C3HHeJ_T0007015.1 MGP_C3HHeJ_G0005754.1 mouse_genomes_project 19 44267014 44267962 - Gm29593 lincRNA lincRNA MGP_C3HHeJ_T0010225.1 MGP_C3HHeJ_G0008358.1 mouse_genomes_project 19 33302310 33302384 + Mir1950 miRNA miRNA MGP_C3HHeJ_T0051679.1 MGP_C3HHeJ_G0024931.1 mouse_genomes_project 19 45126389 45131552 + MGP_C3HHeJ_P0051679 Elovl3 protein_coding protein_coding MGP_C3HHeJ_T0051478.1 MGP_C3HHeJ_G0024867.1 mouse_genomes_project 19 40811035 40817714 + Hoga1 protein_coding processed_transcript MGP_C3HHeJ_T0051479.1 MGP_C3HHeJ_G0024867.1 mouse_genomes_project 19 40811217 40837196 + MGP_C3HHeJ_P0051479 Hoga1 protein_coding protein_coding MGP_C3HHeJ_T0051480.1 MGP_C3HHeJ_G0024867.1 mouse_genomes_project 19 40811276 40825594 + Hoga1 protein_coding retained_intron MGP_C3HHeJ_T0051481.1 MGP_C3HHeJ_G0024867.1 mouse_genomes_project 19 40811343 40837171 + MGP_C3HHeJ_P0051481 Hoga1 protein_coding protein_coding MGP_C3HHeJ_T0050329.1 MGP_C3HHeJ_G0024468.1 mouse_genomes_project 19 2891599 2915984 - MGP_C3HHeJ_P0050329 Pola2 protein_coding protein_coding MGP_C3HHeJ_T0050330.1 MGP_C3HHeJ_G0024468.1 mouse_genomes_project 19 2892161 2915984 - MGP_C3HHeJ_P0050330 Pola2 protein_coding protein_coding MGP_C3HHeJ_T0050332.1 MGP_C3HHeJ_G0024470.1 mouse_genomes_project 19 2944673 2976107 - MGP_C3HHeJ_P0050332 Capn1 protein_coding protein_coding MGP_C3HHeJ_T0050333.1 MGP_C3HHeJ_G0024470.1 mouse_genomes_project 19 2944673 2975529 - MGP_C3HHeJ_P0050333 Capn1 protein_coding protein_coding MGP_C3HHeJ_T0000986.1 MGP_C3HHeJ_G0000923.1 mouse_genomes_project 19 12021050 12021317 + TEC TEC MGP_C3HHeJ_T0051287.1 MGP_C3HHeJ_G0024804.1 mouse_genomes_project 19 34757909 34838884 + MGP_C3HHeJ_P0051287 Pcgf5 protein_coding protein_coding MGP_C3HHeJ_T0051288.1 MGP_C3HHeJ_G0024804.1 mouse_genomes_project 19 34791466 34838884 + MGP_C3HHeJ_P0051288 Pcgf5 protein_coding protein_coding MGP_C3HHeJ_T0051265.1 MGP_C3HHeJ_G0024792.1 mouse_genomes_project 19 32853802 32876460 + MGP_C3HHeJ_P0051265 Ifit2 protein_coding protein_coding MGP_C3HHeJ_T0051266.1 MGP_C3HHeJ_G0024792.1 mouse_genomes_project 19 32853818 32879687 + MGP_C3HHeJ_P0051266 Ifit2 protein_coding protein_coding MGP_C3HHeJ_T0051528.1 MGP_C3HHeJ_G0024884.1 mouse_genomes_project 19 42442314 42445883 + MGP_C3HHeJ_P0051528 Nkx2-3 protein_coding protein_coding MGP_C3HHeJ_T0051824.1 MGP_C3HHeJ_G0024983.1 mouse_genomes_project 19 53303764 53396546 + MGP_C3HHeJ_P0051824 Shoc2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051511.1 MGP_C3HHeJ_G0024879.1 mouse_genomes_project 19 41507438 41536824 - MGP_C3HHeJ_P0051511 Pyroxd2 protein_coding protein_coding MGP_C3HHeJ_T0051039.1 MGP_C3HHeJ_G0024712.1 mouse_genomes_project 19 19190723 19192707 + MGP_C3HHeJ_P0051039 Gm3443 protein_coding protein_coding MGP_C3HHeJ_T0013251.1 MGP_C3HHeJ_G0011355.1 mouse_genomes_project 19 28168595 28168973 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050949.1 MGP_C3HHeJ_G0024661.1 mouse_genomes_project 19 10162966 10163944 + MGP_C3HHeJ_P0050949 Olfr1450 protein_coding protein_coding MGP_C3HHeJ_T0050435.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323668 3339261 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050436.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323688 3326305 + MGP_C3HHeJ_P0050436 Map4k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050437.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323693 3339264 + MGP_C3HHeJ_P0050437 Map4k2 protein_coding protein_coding MGP_C3HHeJ_T0050438.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323724 3325645 + Map4k2 protein_coding processed_transcript MGP_C3HHeJ_T0050439.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323741 3338950 + MGP_C3HHeJ_P0050439 Map4k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050440.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323749 3326523 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050441.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323757 3329391 + MGP_C3HHeJ_P0050441 Map4k2 protein_coding protein_coding MGP_C3HHeJ_T0050442.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323783 3337176 + MGP_C3HHeJ_P0050442 Map4k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050443.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323803 3327172 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050444.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323951 3327507 + Map4k2 protein_coding processed_transcript MGP_C3HHeJ_T0050445.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3323982 3327170 + Map4k2 protein_coding processed_transcript MGP_C3HHeJ_T0050446.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3324004 3327170 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050447.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3325427 3335536 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050448.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3326185 3326494 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050449.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3327164 3328296 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050450.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3328998 3329942 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050451.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3330197 3337489 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050452.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3330317 3335308 + Map4k2 protein_coding processed_transcript MGP_C3HHeJ_T0050453.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3330340 3337487 + MGP_C3HHeJ_P0050453 Map4k2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050454.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3334557 3335229 + Map4k2 protein_coding retained_intron MGP_C3HHeJ_T0050455.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3336268 3339091 + Map4k2 protein_coding processed_transcript MGP_C3HHeJ_T0050456.1 MGP_C3HHeJ_G0024494.1 mouse_genomes_project 19 3336423 3337282 + Map4k2 protein_coding processed_transcript MGP_C3HHeJ_T0003803.1 MGP_C3HHeJ_G0003402.1 mouse_genomes_project 19 46612487 46617260 + Gm19557 antisense antisense MGP_C3HHeJ_T0050346.1 MGP_C3HHeJ_G0024475.1 mouse_genomes_project 19 3029081 3030362 + MGP_C3HHeJ_P0050346 Znhit2 protein_coding protein_coding MGP_C3HHeJ_T0050972.1 MGP_C3HHeJ_G0024684.1 mouse_genomes_project 19 11100536 11101481 - MGP_C3HHeJ_P0050972 Olfr1497 protein_coding protein_coding MGP_C3HHeJ_T0013252.1 MGP_C3HHeJ_G0011356.1 mouse_genomes_project 19 30596696 30623627 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0099160.1 MGP_C3HHeJ_G0037354.1 mouse_genomes_project 19 35666284 35666387 - Gm25268 snRNA snRNA MGP_C3HHeJ_T0051884.1 MGP_C3HHeJ_G0024999.1 mouse_genomes_project 19 56290384 56326960 - MGP_C3HHeJ_P0051884 Ccdc186 protein_coding protein_coding MGP_C3HHeJ_T0051885.1 MGP_C3HHeJ_G0024999.1 mouse_genomes_project 19 56293434 56298938 - MGP_C3HHeJ_P0051885 Ccdc186 protein_coding protein_coding MGP_C3HHeJ_T0051886.1 MGP_C3HHeJ_G0024999.1 mouse_genomes_project 19 56293866 56318453 - MGP_C3HHeJ_P0051886 Ccdc186 protein_coding protein_coding MGP_C3HHeJ_T0051887.1 MGP_C3HHeJ_G0024999.1 mouse_genomes_project 19 56295865 56302268 - Ccdc186 protein_coding retained_intron MGP_C3HHeJ_T0051888.1 MGP_C3HHeJ_G0024999.1 mouse_genomes_project 19 56302137 56305747 - Ccdc186 protein_coding retained_intron MGP_C3HHeJ_T0051889.1 MGP_C3HHeJ_G0024999.1 mouse_genomes_project 19 56304799 56326960 - Ccdc186 protein_coding retained_intron MGP_C3HHeJ_T0003783.1 MGP_C3HHeJ_G0003388.1 mouse_genomes_project 19 4332650 4339372 + Gm17227 antisense antisense MGP_C3HHeJ_T0003784.1 MGP_C3HHeJ_G0003388.1 mouse_genomes_project 19 4332726 4339356 + Gm17227 antisense antisense MGP_C3HHeJ_T0006981.1 MGP_C3HHeJ_G0005729.1 mouse_genomes_project 19 7370658 7373258 - Gm26859 lincRNA lincRNA MGP_C3HHeJ_T0051230.1 MGP_C3HHeJ_G0024773.1 mouse_genomes_project 19 30741799 30790504 + MGP_C3HHeJ_P0051230 Papss2 protein_coding protein_coding MGP_C3HHeJ_T0051231.1 MGP_C3HHeJ_G0024773.1 mouse_genomes_project 19 30741966 30790511 + MGP_C3HHeJ_P0051231 Papss2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050228.1 MGP_C3HHeJ_G0024436.1 mouse_genomes_project 19 2278392 2289343 - MGP_C3HHeJ_P0050228 Sart1 protein_coding protein_coding MGP_C3HHeJ_T0003771.1 MGP_C3HHeJ_G0003382.1 mouse_genomes_project 19 2307344 2319291 + 4930481A15Rik antisense antisense MGP_C3HHeJ_T0003772.1 MGP_C3HHeJ_G0003382.1 mouse_genomes_project 19 2307344 2319188 + 4930481A15Rik antisense antisense MGP_C3HHeJ_T0003773.1 MGP_C3HHeJ_G0003382.1 mouse_genomes_project 19 2307344 2319195 + 4930481A15Rik antisense antisense MGP_C3HHeJ_T0003774.1 MGP_C3HHeJ_G0003382.1 mouse_genomes_project 19 2307390 2325233 + 4930481A15Rik antisense antisense MGP_C3HHeJ_T0051771.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46837252 46940952 - MGP_C3HHeJ_P0051771 Cfap43 protein_coding protein_coding MGP_C3HHeJ_T0051772.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46837297 46865145 - Cfap43 protein_coding processed_transcript MGP_C3HHeJ_T0051773.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46837297 46865145 - Cfap43 protein_coding processed_transcript MGP_C3HHeJ_T0051774.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46854266 46865153 - Cfap43 protein_coding processed_transcript MGP_C3HHeJ_T0051775.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46888936 47025358 - Cfap43 protein_coding retained_intron MGP_C3HHeJ_T0051776.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46899498 46913422 - Cfap43 protein_coding processed_transcript MGP_C3HHeJ_T0051777.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46925412 46940931 - Cfap43 protein_coding retained_intron MGP_C3HHeJ_T0051784.1 MGP_C3HHeJ_G0024965.1 mouse_genomes_project 19 46999597 47025370 - MGP_C3HHeJ_P0051784 Cfap43 protein_coding protein_coding MGP_C3HHeJ_T0050022.1 MGP_C3HHeJ_G0024368.1 mouse_genomes_project 19 721701 735896 + MGP_C3HHeJ_P0050022 Unc93b1 protein_coding protein_coding MGP_C3HHeJ_T0050023.1 MGP_C3HHeJ_G0024368.1 mouse_genomes_project 19 721741 723260 + Unc93b1 protein_coding retained_intron MGP_C3HHeJ_T0050024.1 MGP_C3HHeJ_G0024368.1 mouse_genomes_project 19 721772 735501 + MGP_C3HHeJ_P0050024 Unc93b1 protein_coding protein_coding MGP_C3HHeJ_T0050025.1 MGP_C3HHeJ_G0024368.1 mouse_genomes_project 19 728998 735896 + Unc93b1 protein_coding retained_intron MGP_C3HHeJ_T0051739.1 MGP_C3HHeJ_G0024952.1 mouse_genomes_project 19 46139335 46155066 + MGP_C3HHeJ_P0051739 Taf5 protein_coding protein_coding MGP_C3HHeJ_T0100399.1 MGP_C3HHeJ_G0038593.1 mouse_genomes_project 19 5845299 5845374 + Gm25894 snoRNA snoRNA MGP_C3HHeJ_T0051809.1 MGP_C3HHeJ_G0024976.1 mouse_genomes_project 19 52687392 52687593 - MGP_C3HHeJ_P0051809 Gm10197 protein_coding protein_coding MGP_C3HHeJ_T0010233.1 MGP_C3HHeJ_G0008366.1 mouse_genomes_project 19 43171328 43171389 + Mir5114 miRNA miRNA MGP_C3HHeJ_T0051243.1 MGP_C3HHeJ_G0024781.1 mouse_genomes_project 19 31994125 32068759 - MGP_C3HHeJ_P0051243 protein_coding protein_coding MGP_C3HHeJ_T0051244.1 MGP_C3HHeJ_G0024781.1 mouse_genomes_project 19 31995150 32068749 - MGP_C3HHeJ_P0051244 protein_coding protein_coding MGP_C3HHeJ_T0050976.1 MGP_C3HHeJ_G0024688.1 mouse_genomes_project 19 11238496 11239581 - MGP_C3HHeJ_P0050976 Olfr1504 protein_coding protein_coding MGP_C3HHeJ_T0050281.1 MGP_C3HHeJ_G0024454.1 mouse_genomes_project 19 2572610 2587890 - MGP_C3HHeJ_P0050281 Sipa1 protein_coding protein_coding MGP_C3HHeJ_T0050282.1 MGP_C3HHeJ_G0024454.1 mouse_genomes_project 19 2572610 2587890 - MGP_C3HHeJ_P0050282 Sipa1 protein_coding protein_coding MGP_C3HHeJ_T0050283.1 MGP_C3HHeJ_G0024454.1 mouse_genomes_project 19 2572610 2587890 - MGP_C3HHeJ_P0050283 Sipa1 protein_coding protein_coding MGP_C3HHeJ_T0050284.1 MGP_C3HHeJ_G0024454.1 mouse_genomes_project 19 2572610 2587890 - MGP_C3HHeJ_P0050284 Sipa1 protein_coding protein_coding MGP_C3HHeJ_T0051286.1 MGP_C3HHeJ_G0024803.1 mouse_genomes_project 19 34479452 34488303 - MGP_C3HHeJ_P0051286 Ankrd1 protein_coding protein_coding MGP_C3HHeJ_T0051990.1 MGP_C3HHeJ_G0025033.1 mouse_genomes_project 19 61042101 61042384 - MGP_C3HHeJ_P0051990 Gm21060 protein_coding protein_coding MGP_C3HHeJ_T0003790.1 MGP_C3HHeJ_G0003393.1 mouse_genomes_project 19 20102460 20109725 - Gm27151 antisense antisense MGP_C3HHeJ_T0003791.1 MGP_C3HHeJ_G0003393.1 mouse_genomes_project 19 20102490 20110448 - Gm27151 antisense antisense MGP_C3HHeJ_T0050148.1 MGP_C3HHeJ_G0024400.1 mouse_genomes_project 19 1363288 1480817 + MGP_C3HHeJ_P0050148 Pcx protein_coding protein_coding MGP_C3HHeJ_T0050149.1 MGP_C3HHeJ_G0024400.1 mouse_genomes_project 19 1363568 1469831 + MGP_C3HHeJ_P0050149 Pcx protein_coding unknown_likely_coding MGP_C3HHeJ_T0050150.1 MGP_C3HHeJ_G0024400.1 mouse_genomes_project 19 1452441 1480817 + MGP_C3HHeJ_P0050150 Pcx protein_coding protein_coding MGP_C3HHeJ_T0050177.1 MGP_C3HHeJ_G0024411.1 mouse_genomes_project 19 1721937 1727721 + MGP_C3HHeJ_P0050177 Ctsf protein_coding protein_coding MGP_C3HHeJ_T0003792.1 MGP_C3HHeJ_G0003394.1 mouse_genomes_project 19 27015123 27018147 + 1700018L02Rik antisense antisense MGP_C3HHeJ_T0051064.1 MGP_C3HHeJ_G0024723.1 mouse_genomes_project 19 21477166 21675909 + MGP_C3HHeJ_P0051064 Apba1 protein_coding protein_coding MGP_C3HHeJ_T0051636.1 MGP_C3HHeJ_G0024922.1 mouse_genomes_project 19 44706955 44713042 - MGP_C3HHeJ_P0051636 Fgf8 protein_coding protein_coding MGP_C3HHeJ_T0051637.1 MGP_C3HHeJ_G0024922.1 mouse_genomes_project 19 44706970 44713083 - MGP_C3HHeJ_P0051637 Fgf8 protein_coding protein_coding MGP_C3HHeJ_T0051638.1 MGP_C3HHeJ_G0024922.1 mouse_genomes_project 19 44706975 44713041 - MGP_C3HHeJ_P0051638 Fgf8 protein_coding protein_coding MGP_C3HHeJ_T0051639.1 MGP_C3HHeJ_G0024922.1 mouse_genomes_project 19 44707093 44713026 - MGP_C3HHeJ_P0051639 Fgf8 protein_coding protein_coding MGP_C3HHeJ_T0051640.1 MGP_C3HHeJ_G0024922.1 mouse_genomes_project 19 44707128 44712842 - MGP_C3HHeJ_P0051640 Fgf8 protein_coding protein_coding MGP_C3HHeJ_T0051641.1 MGP_C3HHeJ_G0024922.1 mouse_genomes_project 19 44707147 44712842 - MGP_C3HHeJ_P0051641 Fgf8 protein_coding protein_coding MGP_C3HHeJ_T0051088.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24490315 24676848 + MGP_C3HHeJ_P0051088 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051089.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24490319 24676802 + MGP_C3HHeJ_P0051089 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051090.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24509662 24517488 + MGP_C3HHeJ_P0051090 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051091.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24559681 24568907 + Smarca2 protein_coding retained_intron MGP_C3HHeJ_T0051092.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24571336 24650465 + Smarca2 protein_coding processed_transcript MGP_C3HHeJ_T0051093.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24613132 24670280 + Smarca2 protein_coding retained_intron MGP_C3HHeJ_T0051094.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24618965 24650505 + Smarca2 protein_coding processed_transcript MGP_C3HHeJ_T0051095.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24646357 24676003 + MGP_C3HHeJ_P0051095 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051096.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24646512 24675897 + MGP_C3HHeJ_P0051096 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051097.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24646547 24674769 + MGP_C3HHeJ_P0051097 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051098.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24646548 24675897 + MGP_C3HHeJ_P0051098 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051099.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24646548 24676800 + MGP_C3HHeJ_P0051099 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051100.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24648258 24672832 + MGP_C3HHeJ_P0051100 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051101.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24649483 24669522 + MGP_C3HHeJ_P0051101 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051102.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24650477 24676848 + MGP_C3HHeJ_P0051102 Smarca2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051103.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24652138 24676178 + MGP_C3HHeJ_P0051103 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0051104.1 MGP_C3HHeJ_G0024737.1 mouse_genomes_project 19 24669029 24675959 + MGP_C3HHeJ_P0051104 Smarca2 protein_coding protein_coding MGP_C3HHeJ_T0050917.1 MGP_C3HHeJ_G0024644.1 mouse_genomes_project 19 9646435 9650937 + MGP_C3HHeJ_P0050917 Mpeg1 protein_coding protein_coding MGP_C3HHeJ_T0051408.1 MGP_C3HHeJ_G0024844.1 mouse_genomes_project 19 39306478 39322203 - MGP_C3HHeJ_P0051408 Tctn3 protein_coding protein_coding MGP_C3HHeJ_T0051409.1 MGP_C3HHeJ_G0024844.1 mouse_genomes_project 19 39315059 39322173 - MGP_C3HHeJ_P0051409 Tctn3 protein_coding protein_coding MGP_C3HHeJ_T0051410.1 MGP_C3HHeJ_G0024844.1 mouse_genomes_project 19 39317086 39322170 - MGP_C3HHeJ_P0051410 Tctn3 protein_coding protein_coding MGP_C3HHeJ_T0051411.1 MGP_C3HHeJ_G0024844.1 mouse_genomes_project 19 39321094 39322158 - Tctn3 protein_coding retained_intron MGP_C3HHeJ_T0050902.1 MGP_C3HHeJ_G0024629.1 mouse_genomes_project 19 9022254 9055946 + MGP_C3HHeJ_P0050902 Patl1 protein_coding protein_coding MGP_C3HHeJ_T0051487.1 MGP_C3HHeJ_G0024872.1 mouse_genomes_project 19 40916021 40920333 + MGP_C3HHeJ_P0051487 Marveld1 protein_coding protein_coding MGP_C3HHeJ_T0051488.1 MGP_C3HHeJ_G0024872.1 mouse_genomes_project 19 40916338 40920092 + MGP_C3HHeJ_P0051488 Marveld1 protein_coding protein_coding MGP_C3HHeJ_T0010237.1 MGP_C3HHeJ_G0008370.1 mouse_genomes_project 19 46857326 46857462 - Mir8090 miRNA miRNA MGP_C3HHeJ_T0050791.1 MGP_C3HHeJ_G0024591.1 mouse_genomes_project 19 7792067 7836080 - MGP_C3HHeJ_P0050791 Cd6 protein_coding protein_coding MGP_C3HHeJ_T0050792.1 MGP_C3HHeJ_G0024591.1 mouse_genomes_project 19 7792072 7801976 - Cd6 protein_coding retained_intron MGP_C3HHeJ_T0050793.1 MGP_C3HHeJ_G0024591.1 mouse_genomes_project 19 7792075 7835986 - MGP_C3HHeJ_P0050793 Cd6 protein_coding protein_coding MGP_C3HHeJ_T0050794.1 MGP_C3HHeJ_G0024591.1 mouse_genomes_project 19 7793712 7795715 - Cd6 protein_coding retained_intron MGP_C3HHeJ_T0050795.1 MGP_C3HHeJ_G0024591.1 mouse_genomes_project 19 7797805 7835878 - MGP_C3HHeJ_P0050795 Cd6 protein_coding protein_coding MGP_C3HHeJ_T0051810.1 MGP_C3HHeJ_G0024977.1 mouse_genomes_project 19 52695035 52706405 - MGP_C3HHeJ_P0051810 Smndc1 protein_coding protein_coding MGP_C3HHeJ_T0097890.1 MGP_C3HHeJ_G0036102.1 mouse_genomes_project 19 60642636 60643219 - pseudogene pseudogene MGP_C3HHeJ_T0017479.1 MGP_C3HHeJ_G0015144.1 mouse_genomes_project 19 7748462 7788776 + A430093F15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017480.1 MGP_C3HHeJ_G0015144.1 mouse_genomes_project 19 7748466 7788767 + A430093F15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017481.1 MGP_C3HHeJ_G0015144.1 mouse_genomes_project 19 7748475 7788410 + A430093F15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017482.1 MGP_C3HHeJ_G0015144.1 mouse_genomes_project 19 7758802 7759694 + A430093F15Rik processed_transcript retained_intron MGP_C3HHeJ_T0017483.1 MGP_C3HHeJ_G0015144.1 mouse_genomes_project 19 7784647 7788772 + A430093F15Rik processed_transcript lincRNA MGP_C3HHeJ_T0017484.1 MGP_C3HHeJ_G0015144.1 mouse_genomes_project 19 7788084 7788769 + A430093F15Rik processed_transcript retained_intron MGP_C3HHeJ_T0051680.1 MGP_C3HHeJ_G0024932.1 mouse_genomes_project 19 45131928 45144569 - MGP_C3HHeJ_P0051680 Pitx3 protein_coding protein_coding MGP_C3HHeJ_T0051681.1 MGP_C3HHeJ_G0024932.1 mouse_genomes_project 19 45132738 45133533 - Pitx3 protein_coding retained_intron MGP_C3HHeJ_T0051682.1 MGP_C3HHeJ_G0024932.1 mouse_genomes_project 19 45133275 45137241 - MGP_C3HHeJ_P0051682 Pitx3 protein_coding protein_coding MGP_C3HHeJ_T0006983.1 MGP_C3HHeJ_G0005731.1 mouse_genomes_project 19 8057812 8060564 - AW112010 lincRNA lincRNA MGP_C3HHeJ_T0051439.1 MGP_C3HHeJ_G0024855.1 mouse_genomes_project 19 40316152 40320319 + MGP_C3HHeJ_P0051439 Gm340 protein_coding protein_coding MGP_C3HHeJ_T0050773.1 MGP_C3HHeJ_G0024579.1 mouse_genomes_project 19 7459587 7468230 - MGP_C3HHeJ_P0050773 Ppp1r32 protein_coding protein_coding MGP_C3HHeJ_T0051786.1 MGP_C3HHeJ_G0024969.1 mouse_genomes_project 19 47326249 47949120 + MGP_C3HHeJ_P0051786 Sorcs3 protein_coding protein_coding MGP_C3HHeJ_T0050188.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1798188 1810148 - MGP_C3HHeJ_P0050188 Peli3 protein_coding protein_coding MGP_C3HHeJ_T0050189.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1799392 1810183 - MGP_C3HHeJ_P0050189 Peli3 protein_coding protein_coding MGP_C3HHeJ_T0050190.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1802429 1806072 - Peli3 protein_coding retained_intron MGP_C3HHeJ_T0050191.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1802455 1810154 - Peli3 protein_coding processed_transcript MGP_C3HHeJ_T0050192.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1802459 1810129 - MGP_C3HHeJ_P0050192 Peli3 protein_coding protein_coding MGP_C3HHeJ_T0050193.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1802466 1810123 - Peli3 protein_coding processed_transcript MGP_C3HHeJ_T0050194.1 MGP_C3HHeJ_G0024416.1 mouse_genomes_project 19 1808655 1810102 - Peli3 protein_coding retained_intron MGP_C3HHeJ_T0050700.1 MGP_C3HHeJ_G0024551.1 mouse_genomes_project 19 6013855 6014773 - MGP_C3HHeJ_P0050700 Uqcc3 protein_coding protein_coding MGP_C3HHeJ_T0050186.1 MGP_C3HHeJ_G0024414.1 mouse_genomes_project 19 1754084 1774390 - MGP_C3HHeJ_P0050186 Bbs1 protein_coding protein_coding MGP_C3HHeJ_T0051310.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35439900 35637283 - MGP_C3HHeJ_P0051310 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051311.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35439906 35600411 - MGP_C3HHeJ_P0051311 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051312.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35440488 35602379 - MGP_C3HHeJ_P0051312 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051313.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35440488 35637283 - MGP_C3HHeJ_P0051313 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051314.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35441579 35637294 - MGP_C3HHeJ_P0051314 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051315.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35442543 35637114 - MGP_C3HHeJ_P0051315 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051316.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35443247 35626868 - MGP_C3HHeJ_P0051316 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051317.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35472520 35637329 - MGP_C3HHeJ_P0051317 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051318.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35600752 35604323 - MGP_C3HHeJ_P0051318 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051319.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35600908 35602372 - MGP_C3HHeJ_P0051319 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051320.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35600938 35638422 - MGP_C3HHeJ_P0051320 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0051321.1 MGP_C3HHeJ_G0024810.1 mouse_genomes_project 19 35601003 35601532 - MGP_C3HHeJ_P0051321 Cpeb3 protein_coding protein_coding MGP_C3HHeJ_T0050344.1 MGP_C3HHeJ_G0024474.1 mouse_genomes_project 19 3023735 3025304 + MGP_C3HHeJ_P0050344 protein_coding protein_coding MGP_C3HHeJ_T0050772.1 MGP_C3HHeJ_G0024578.1 mouse_genomes_project 19 7439458 7441524 - MGP_C3HHeJ_P0050772 Lrrc10b protein_coding protein_coding MGP_C3HHeJ_T0050907.1 MGP_C3HHeJ_G0024634.1 mouse_genomes_project 19 9270632 9271680 - MGP_C3HHeJ_P0050907 Olfr76 protein_coding protein_coding MGP_C3HHeJ_T0050996.1 MGP_C3HHeJ_G0024697.1 mouse_genomes_project 19 14771891 14805433 - MGP_C3HHeJ_P0050996 Gcnt1 protein_coding protein_coding MGP_C3HHeJ_T0050997.1 MGP_C3HHeJ_G0024697.1 mouse_genomes_project 19 14771893 14787748 - MGP_C3HHeJ_P0050997 Gcnt1 protein_coding protein_coding MGP_C3HHeJ_T0050998.1 MGP_C3HHeJ_G0024697.1 mouse_genomes_project 19 14778015 14805433 - Gcnt1 protein_coding retained_intron MGP_C3HHeJ_T0051529.1 MGP_C3HHeJ_G0024885.1 mouse_genomes_project 19 42495846 42507798 - MGP_C3HHeJ_P0051529 Slc25a28 protein_coding protein_coding MGP_C3HHeJ_T0050104.1 MGP_C3HHeJ_G0024391.1 mouse_genomes_project 19 1041879 1051163 + MGP_C3HHeJ_P0050104 Clcf1 protein_coding protein_coding MGP_C3HHeJ_T0050105.1 MGP_C3HHeJ_G0024391.1 mouse_genomes_project 19 1041905 1051163 + Clcf1 protein_coding retained_intron MGP_C3HHeJ_T0050106.1 MGP_C3HHeJ_G0024391.1 mouse_genomes_project 19 1041946 1051163 + MGP_C3HHeJ_P0050106 Clcf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050107.1 MGP_C3HHeJ_G0024391.1 mouse_genomes_project 19 1042235 1050186 + Clcf1 protein_coding processed_transcript MGP_C3HHeJ_T0101166.1 MGP_C3HHeJ_G0039318.1 mouse_genomes_project 19 10050554 10051297 + transcribed_processed_pseudogene processed_transcript MGP_C3HHeJ_T0101167.1 MGP_C3HHeJ_G0039318.1 mouse_genomes_project 19 10050738 10051077 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C3HHeJ_T0050986.1 MGP_C3HHeJ_G0024691.1 mouse_genomes_project 19 13349809 13377660 - MGP_C3HHeJ_P0050986 Cep78 protein_coding protein_coding MGP_C3HHeJ_T0097888.1 MGP_C3HHeJ_G0036100.1 mouse_genomes_project 19 40585544 40586186 + pseudogene pseudogene MGP_C3HHeJ_T0050143.1 MGP_C3HHeJ_G0024398.1 mouse_genomes_project 19 1294452 1325892 - MGP_C3HHeJ_P0050143 Syt12 protein_coding protein_coding MGP_C3HHeJ_T0050144.1 MGP_C3HHeJ_G0024398.1 mouse_genomes_project 19 1296277 1300700 - Syt12 protein_coding processed_transcript MGP_C3HHeJ_T0050145.1 MGP_C3HHeJ_G0024398.1 mouse_genomes_project 19 1305505 1325571 - MGP_C3HHeJ_P0050145 Syt12 protein_coding protein_coding MGP_C3HHeJ_T0050146.1 MGP_C3HHeJ_G0024398.1 mouse_genomes_project 19 1314719 1325601 - Syt12 protein_coding retained_intron MGP_C3HHeJ_T0051707.1 MGP_C3HHeJ_G0024938.1 mouse_genomes_project 19 45360423 45378731 + MGP_C3HHeJ_P0051707 Mfsd13a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051708.1 MGP_C3HHeJ_G0024938.1 mouse_genomes_project 19 45360444 45378741 + MGP_C3HHeJ_P0051708 Mfsd13a protein_coding protein_coding MGP_C3HHeJ_T0051709.1 MGP_C3HHeJ_G0024938.1 mouse_genomes_project 19 45370209 45378731 + Mfsd13a protein_coding retained_intron MGP_C3HHeJ_T0010203.1 MGP_C3HHeJ_G0008336.1 mouse_genomes_project 19 3242484 3242573 + Mir192 miRNA miRNA MGP_C3HHeJ_T0050274.1 MGP_C3HHeJ_G0024451.1 mouse_genomes_project 19 2521623 2523190 + MGP_C3HHeJ_P0050274 Rnaseh2c protein_coding protein_coding MGP_C3HHeJ_T0050275.1 MGP_C3HHeJ_G0024451.1 mouse_genomes_project 19 2521637 2522618 + Rnaseh2c protein_coding retained_intron MGP_C3HHeJ_T0050276.1 MGP_C3HHeJ_G0024451.1 mouse_genomes_project 19 2521725 2522683 + Rnaseh2c protein_coding retained_intron MGP_C3HHeJ_T0050277.1 MGP_C3HHeJ_G0024451.1 mouse_genomes_project 19 2521985 2522689 + MGP_C3HHeJ_P0050277 Rnaseh2c protein_coding protein_coding MGP_C3HHeJ_T0050278.1 MGP_C3HHeJ_G0024451.1 mouse_genomes_project 19 2522160 2522685 + Rnaseh2c protein_coding retained_intron MGP_C3HHeJ_T0050602.1 MGP_C3HHeJ_G0024527.1 mouse_genomes_project 19 4541425 4589782 + MGP_C3HHeJ_P0050602 Atl3 protein_coding protein_coding MGP_C3HHeJ_T0050603.1 MGP_C3HHeJ_G0024527.1 mouse_genomes_project 19 4541823 4589782 + MGP_C3HHeJ_P0050603 Atl3 protein_coding protein_coding MGP_C3HHeJ_T0050876.1 MGP_C3HHeJ_G0024617.1 mouse_genomes_project 19 8631407 8655594 + MGP_C3HHeJ_P0050876 Ms4a4d protein_coding protein_coding MGP_C3HHeJ_T0051446.1 MGP_C3HHeJ_G0024858.1 mouse_genomes_project 19 40518931 40554706 - MGP_C3HHeJ_P0051446 Arhgap19 protein_coding protein_coding MGP_C3HHeJ_T0051447.1 MGP_C3HHeJ_G0024858.1 mouse_genomes_project 19 40518934 40554743 - MGP_C3HHeJ_P0051447 Arhgap19 protein_coding protein_coding MGP_C3HHeJ_T0051448.1 MGP_C3HHeJ_G0024858.1 mouse_genomes_project 19 40522110 40533660 - MGP_C3HHeJ_P0051448 Arhgap19 protein_coding protein_coding MGP_C3HHeJ_T0051449.1 MGP_C3HHeJ_G0024858.1 mouse_genomes_project 19 40522304 40554706 - MGP_C3HHeJ_P0051449 Arhgap19 protein_coding protein_coding MGP_C3HHeJ_T0007021.1 MGP_C3HHeJ_G0005758.1 mouse_genomes_project 19 45336631 45339886 + Gm26792 lincRNA lincRNA MGP_C3HHeJ_T0051087.1 MGP_C3HHeJ_G0024736.1 mouse_genomes_project 19 23539677 23547618 + MGP_C3HHeJ_P0051087 Dmrt2 protein_coding protein_coding MGP_C3HHeJ_T0050953.1 MGP_C3HHeJ_G0024665.1 mouse_genomes_project 19 10299836 10300790 - MGP_C3HHeJ_P0050953 Olfr1457 protein_coding protein_coding MGP_C3HHeJ_T0010238.1 MGP_C3HHeJ_G0008371.1 mouse_genomes_project 19 47025262 47025344 - Gm22240 miRNA miRNA MGP_C3HHeJ_T0051729.1 MGP_C3HHeJ_G0024946.1 mouse_genomes_project 19 45730288 45745755 + MGP_C3HHeJ_P0051729 Borcs7 protein_coding protein_coding MGP_C3HHeJ_T0050620.1 MGP_C3HHeJ_G0024534.1 mouse_genomes_project 19 5711801 5732365 + MGP_C3HHeJ_P0050620 Slc22a8 protein_coding protein_coding MGP_C3HHeJ_T0050621.1 MGP_C3HHeJ_G0024534.1 mouse_genomes_project 19 5711801 5732365 + MGP_C3HHeJ_P0050621 Slc22a8 protein_coding protein_coding MGP_C3HHeJ_T0051927.1 MGP_C3HHeJ_G0025006.1 mouse_genomes_project 19 57155245 57693160 + MGP_C3HHeJ_P0051927 Atrnl1 protein_coding protein_coding MGP_C3HHeJ_T0017491.1 MGP_C3HHeJ_G0015148.1 mouse_genomes_project 19 24667342 24724948 - 4931403E22Rik processed_transcript processed_transcript MGP_C3HHeJ_T0050591.1 MGP_C3HHeJ_G0024524.1 mouse_genomes_project 19 4393673 4422938 - MGP_C3HHeJ_P0050591 AI846148 protein_coding protein_coding MGP_C3HHeJ_T0050208.1 MGP_C3HHeJ_G0024425.1 mouse_genomes_project 19 1965313 1970489 + MGP_C3HHeJ_P0050208 Yif1a protein_coding protein_coding MGP_C3HHeJ_T0050955.1 MGP_C3HHeJ_G0024667.1 mouse_genomes_project 19 10342927 10344028 - MGP_C3HHeJ_P0050955 Olfr1459 protein_coding protein_coding MGP_C3HHeJ_T0050331.1 MGP_C3HHeJ_G0024469.1 mouse_genomes_project 19 2921991 2942271 - MGP_C3HHeJ_P0050331 Slc22a20 protein_coding protein_coding MGP_C3HHeJ_T0050918.1 MGP_C3HHeJ_G0024645.1 mouse_genomes_project 19 9651990 9687642 - MGP_C3HHeJ_P0050918 Dtx4 protein_coding protein_coding MGP_C3HHeJ_T0050299.1 MGP_C3HHeJ_G0024458.1 mouse_genomes_project 19 2631194 2650118 - MGP_C3HHeJ_P0050299 Ehbp1l1 protein_coding protein_coding MGP_C3HHeJ_T0050300.1 MGP_C3HHeJ_G0024458.1 mouse_genomes_project 19 2631194 2650118 - MGP_C3HHeJ_P0050300 Ehbp1l1 protein_coding protein_coding MGP_C3HHeJ_T0011377.1 MGP_C3HHeJ_G0009510.1 mouse_genomes_project 19 2778857 2778967 - Gm27505 misc_RNA misc_RNA MGP_C3HHeJ_T0007009.1 MGP_C3HHeJ_G0005749.1 mouse_genomes_project 19 39299443 39304893 + Gm27042 lincRNA lincRNA MGP_C3HHeJ_T0051811.1 MGP_C3HHeJ_G0024978.1 mouse_genomes_project 19 52856833 52870173 + MGP_C3HHeJ_P0051811 Dusp5 protein_coding protein_coding MGP_C3HHeJ_T0099153.1 MGP_C3HHeJ_G0037347.1 mouse_genomes_project 19 15343604 15343707 - Gm22880 snRNA snRNA MGP_C3HHeJ_T0051954.1 MGP_C3HHeJ_G0025020.1 mouse_genomes_project 19 59083783 59091448 + MGP_C3HHeJ_P0051954 Emx2 protein_coding protein_coding MGP_C3HHeJ_T0051955.1 MGP_C3HHeJ_G0025020.1 mouse_genomes_project 19 59084931 59091444 + MGP_C3HHeJ_P0051955 Emx2 protein_coding protein_coding MGP_C3HHeJ_T0051956.1 MGP_C3HHeJ_G0025020.1 mouse_genomes_project 19 59088875 59090283 + Emx2 protein_coding processed_transcript MGP_C3HHeJ_T0013261.1 MGP_C3HHeJ_G0011365.1 mouse_genomes_project 19 60485326 60485694 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051948.1 MGP_C3HHeJ_G0025015.1 mouse_genomes_project 19 58584894 58686548 - MGP_C3HHeJ_P0051948 Shtn1 protein_coding protein_coding MGP_C3HHeJ_T0051002.1 MGP_C3HHeJ_G0024699.1 mouse_genomes_project 19 14887721 15312224 - MGP_C3HHeJ_P0051002 Pcsk5 protein_coding protein_coding MGP_C3HHeJ_T0051003.1 MGP_C3HHeJ_G0024699.1 mouse_genomes_project 19 14888198 14984042 - MGP_C3HHeJ_P0051003 Pcsk5 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051004.1 MGP_C3HHeJ_G0024699.1 mouse_genomes_project 19 15024175 15311744 - MGP_C3HHeJ_P0051004 Pcsk5 protein_coding protein_coding MGP_C3HHeJ_T0051336.1 MGP_C3HHeJ_G0024818.1 mouse_genomes_project 19 36380355 36532473 - MGP_C3HHeJ_P0051336 Myof protein_coding protein_coding MGP_C3HHeJ_T0051337.1 MGP_C3HHeJ_G0024818.1 mouse_genomes_project 19 36380355 36532473 - MGP_C3HHeJ_P0051337 Myof protein_coding protein_coding MGP_C3HHeJ_T0051338.1 MGP_C3HHeJ_G0024818.1 mouse_genomes_project 19 36380843 36532217 - MGP_C3HHeJ_P0051338 Myof protein_coding unknown_likely_coding MGP_C3HHeJ_T0013242.1 MGP_C3HHeJ_G0011346.1 mouse_genomes_project 19 16088067 16088854 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050298.1 MGP_C3HHeJ_G0024457.1 mouse_genomes_project 19 2628185 2630920 + MGP_C3HHeJ_P0050298 Kcnk7 protein_coding protein_coding MGP_C3HHeJ_T0013229.1 MGP_C3HHeJ_G0011333.1 mouse_genomes_project 19 4754588 4755756 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051482.1 MGP_C3HHeJ_G0024868.1 mouse_genomes_project 19 40817671 40819051 + MGP_C3HHeJ_P0051482 4933411K16Rik protein_coding protein_coding MGP_C3HHeJ_T0050951.1 MGP_C3HHeJ_G0024663.1 mouse_genomes_project 19 10232752 10233676 - MGP_C3HHeJ_P0050951 Olfr1453 protein_coding protein_coding MGP_C3HHeJ_T0050048.1 MGP_C3HHeJ_G0024375.1 mouse_genomes_project 19 847639 850278 - MGP_C3HHeJ_P0050048 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050050.1 MGP_C3HHeJ_G0024375.1 mouse_genomes_project 19 847646 850275 - MGP_C3HHeJ_P0050050 protein_coding protein_coding MGP_C3HHeJ_T0099157.1 MGP_C3HHeJ_G0037351.1 mouse_genomes_project 19 27987216 27987382 + Gm26046 snRNA snRNA MGP_C3HHeJ_T0050312.1 MGP_C3HHeJ_G0024463.1 mouse_genomes_project 19 2783855 2809985 - MGP_C3HHeJ_P0050312 Frmd8 protein_coding protein_coding MGP_C3HHeJ_T0050313.1 MGP_C3HHeJ_G0024463.1 mouse_genomes_project 19 2796967 2798394 - Frmd8 protein_coding retained_intron MGP_C3HHeJ_T0050314.1 MGP_C3HHeJ_G0024463.1 mouse_genomes_project 19 2799895 2808139 - Frmd8 protein_coding retained_intron MGP_C3HHeJ_T0050315.1 MGP_C3HHeJ_G0024463.1 mouse_genomes_project 19 2799981 2809950 - MGP_C3HHeJ_P0050315 Frmd8 protein_coding protein_coding MGP_C3HHeJ_T0003801.1 MGP_C3HHeJ_G0003400.1 mouse_genomes_project 19 44080206 44087016 - Tlx1os antisense antisense MGP_C3HHeJ_T0051106.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25132638 25166525 + Vldlr protein_coding retained_intron MGP_C3HHeJ_T0051107.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25133174 25166632 + MGP_C3HHeJ_P0051107 Vldlr protein_coding protein_coding MGP_C3HHeJ_T0051108.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25133174 25151011 + MGP_C3HHeJ_P0051108 Vldlr protein_coding protein_coding MGP_C3HHeJ_T0051109.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25133511 25147925 + Vldlr protein_coding processed_transcript MGP_C3HHeJ_T0051110.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25133511 25171001 + MGP_C3HHeJ_P0051110 Vldlr protein_coding protein_coding MGP_C3HHeJ_T0051111.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25133511 25166497 + MGP_C3HHeJ_P0051111 Vldlr protein_coding protein_coding MGP_C3HHeJ_T0051112.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25133612 25166533 + MGP_C3HHeJ_P0051112 Vldlr protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051113.1 MGP_C3HHeJ_G0024739.1 mouse_genomes_project 19 25154928 25160598 + MGP_C3HHeJ_P0051113 Vldlr protein_coding protein_coding MGP_C3HHeJ_T0051751.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46599837 46638561 - MGP_C3HHeJ_P0051751 Obfc1 protein_coding protein_coding MGP_C3HHeJ_T0051752.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46599842 46608277 - Obfc1 protein_coding processed_transcript MGP_C3HHeJ_T0051753.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46606736 46638478 - MGP_C3HHeJ_P0051753 Obfc1 protein_coding protein_coding MGP_C3HHeJ_T0051754.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46622830 46638406 - Obfc1 protein_coding processed_transcript MGP_C3HHeJ_T0051755.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46624771 46638338 - Obfc1 protein_coding processed_transcript MGP_C3HHeJ_T0051756.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46624900 46638536 - Obfc1 protein_coding retained_intron MGP_C3HHeJ_T0051757.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46625425 46638949 - MGP_C3HHeJ_P0051757 Obfc1 protein_coding protein_coding MGP_C3HHeJ_T0051758.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46633798 46637704 - Obfc1 protein_coding processed_transcript MGP_C3HHeJ_T0051759.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46637356 46638488 - Obfc1 protein_coding retained_intron MGP_C3HHeJ_T0051760.1 MGP_C3HHeJ_G0024961.1 mouse_genomes_project 19 46637731 46638466 - Obfc1 protein_coding processed_transcript MGP_C3HHeJ_T0100414.1 MGP_C3HHeJ_G0038608.1 mouse_genomes_project 19 22726513 22726645 - Gm23658 snoRNA snoRNA MGP_C3HHeJ_T0100411.1 MGP_C3HHeJ_G0038605.1 mouse_genomes_project 19 17619412 17619544 - Gm22684 snoRNA snoRNA MGP_C3HHeJ_T0050623.1 MGP_C3HHeJ_G0024536.1 mouse_genomes_project 19 5782929 5798370 + MGP_C3HHeJ_P0050623 Chrm1 protein_coding protein_coding MGP_C3HHeJ_T0050624.1 MGP_C3HHeJ_G0024536.1 mouse_genomes_project 19 5784245 5803803 + MGP_C3HHeJ_P0050624 Chrm1 protein_coding protein_coding MGP_C3HHeJ_T0050625.1 MGP_C3HHeJ_G0024536.1 mouse_genomes_project 19 5784245 5801783 + MGP_C3HHeJ_P0050625 Chrm1 protein_coding protein_coding MGP_C3HHeJ_T0050229.1 MGP_C3HHeJ_G0024437.1 mouse_genomes_project 19 2290675 2295026 - MGP_C3HHeJ_P0050229 Tsga10ip protein_coding protein_coding MGP_C3HHeJ_T0007025.1 MGP_C3HHeJ_G0005761.1 mouse_genomes_project 19 52765021 52789930 - Mirt1 lincRNA lincRNA MGP_C3HHeJ_T0007026.1 MGP_C3HHeJ_G0005761.1 mouse_genomes_project 19 52768598 52771899 - Mirt1 lincRNA lincRNA MGP_C3HHeJ_T0007027.1 MGP_C3HHeJ_G0005761.1 mouse_genomes_project 19 52776774 52779228 - Mirt1 lincRNA lincRNA MGP_C3HHeJ_T0051512.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41540271 41565089 - MGP_C3HHeJ_P0051512 Hps1 protein_coding protein_coding MGP_C3HHeJ_T0051513.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41540361 41565070 - Hps1 protein_coding retained_intron MGP_C3HHeJ_T0051514.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41540361 41563757 - MGP_C3HHeJ_P0051514 Hps1 protein_coding protein_coding MGP_C3HHeJ_T0051515.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41540363 41565087 - MGP_C3HHeJ_P0051515 Hps1 protein_coding protein_coding MGP_C3HHeJ_T0051516.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41540747 41542983 - MGP_C3HHeJ_P0051516 Hps1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051517.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41543234 41565076 - MGP_C3HHeJ_P0051517 Hps1 protein_coding protein_coding MGP_C3HHeJ_T0051518.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41543634 41563372 - MGP_C3HHeJ_P0051518 Hps1 protein_coding protein_coding MGP_C3HHeJ_T0051519.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41545519 41549042 - Hps1 protein_coding retained_intron MGP_C3HHeJ_T0051520.1 MGP_C3HHeJ_G0024880.1 mouse_genomes_project 19 41551965 41554965 - Hps1 protein_coding retained_intron MGP_C3HHeJ_T0017454.1 MGP_C3HHeJ_G0015138.1 mouse_genomes_project 19 2730451 2731439 + Gm20417 processed_transcript processed_transcript MGP_C3HHeJ_T0050831.1 MGP_C3HHeJ_G0024602.1 mouse_genomes_project 19 8078495 8092100 - MGP_C3HHeJ_P0050831 Ms4a8a protein_coding protein_coding MGP_C3HHeJ_T0050832.1 MGP_C3HHeJ_G0024602.1 mouse_genomes_project 19 8086587 8092100 - Ms4a8a protein_coding retained_intron MGP_C3HHeJ_T0050559.1 MGP_C3HHeJ_G0024517.1 mouse_genomes_project 19 4032798 4058389 - MGP_C3HHeJ_P0050559 Stip1 protein_coding protein_coding MGP_C3HHeJ_T0051155.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27334093 27346054 - MGP_C3HHeJ_P0051155 Plgrkt protein_coding protein_coding MGP_C3HHeJ_T0051156.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27335893 27337362 - Plgrkt protein_coding retained_intron MGP_C3HHeJ_T0051157.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27336530 27349062 - MGP_C3HHeJ_P0051157 Plgrkt protein_coding protein_coding MGP_C3HHeJ_T0051158.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27336624 27349479 - MGP_C3HHeJ_P0051158 Plgrkt protein_coding protein_coding MGP_C3HHeJ_T0051159.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27346032 27354963 - MGP_C3HHeJ_P0051159 Plgrkt protein_coding protein_coding MGP_C3HHeJ_T0051160.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27348508 27351554 - Plgrkt protein_coding processed_transcript MGP_C3HHeJ_T0051161.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27349743 27352117 - Plgrkt protein_coding processed_transcript MGP_C3HHeJ_T0051162.1 MGP_C3HHeJ_G0024753.1 mouse_genomes_project 19 27351729 27355045 - Plgrkt protein_coding processed_transcript MGP_C3HHeJ_T0049955.1 MGP_C3HHeJ_G0024355.1 mouse_genomes_project 19 11387 33320 - MGP_C3HHeJ_P0049955 Ighmbp2 protein_coding protein_coding MGP_C3HHeJ_T0049956.1 MGP_C3HHeJ_G0024355.1 mouse_genomes_project 19 14773 33514 - MGP_C3HHeJ_P0049956 Ighmbp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049957.1 MGP_C3HHeJ_G0024355.1 mouse_genomes_project 19 15319 17678 - Ighmbp2 protein_coding retained_intron MGP_C3HHeJ_T0003775.1 MGP_C3HHeJ_G0003383.1 mouse_genomes_project 19 2651005 2655426 + Gm16538 antisense antisense MGP_C3HHeJ_T0010228.1 MGP_C3HHeJ_G0008361.1 mouse_genomes_project 19 39617821 39617908 + Mir8092 miRNA miRNA MGP_C3HHeJ_T0050993.1 MGP_C3HHeJ_G0024695.1 mouse_genomes_project 19 14306594 14308109 - MGP_C3HHeJ_P0050993 Foxb2 protein_coding protein_coding MGP_C3HHeJ_T0100409.1 MGP_C3HHeJ_G0038603.1 mouse_genomes_project 19 10939340 10939472 - Gm24124 snoRNA snoRNA MGP_C3HHeJ_T0049964.1 MGP_C3HHeJ_G0024357.1 mouse_genomes_project 19 75785 144083 + MGP_C3HHeJ_P0049964 Cpt1a protein_coding protein_coding MGP_C3HHeJ_T0051215.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30224251 30495818 - MGP_C3HHeJ_P0051215 Sgms1 protein_coding protein_coding MGP_C3HHeJ_T0051216.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30224254 30453113 - MGP_C3HHeJ_P0051216 Sgms1 protein_coding protein_coding MGP_C3HHeJ_T0051217.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30225003 30310108 - MGP_C3HHeJ_P0051217 Sgms1 protein_coding protein_coding MGP_C3HHeJ_T0051218.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30225669 30379241 - MGP_C3HHeJ_P0051218 Sgms1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051219.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30225671 30263121 - MGP_C3HHeJ_P0051219 Sgms1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051220.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30261153 30497015 - Sgms1 protein_coding retained_intron MGP_C3HHeJ_T0051221.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30262958 30301944 - MGP_C3HHeJ_P0051221 Sgms1 protein_coding protein_coding MGP_C3HHeJ_T0051222.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30263055 30339112 - Sgms1 protein_coding processed_transcript MGP_C3HHeJ_T0051223.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30263067 30427042 - Sgms1 protein_coding processed_transcript MGP_C3HHeJ_T0051224.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30263196 30379215 - Sgms1 protein_coding processed_transcript MGP_C3HHeJ_T0051225.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30318756 30349464 - Sgms1 protein_coding processed_transcript MGP_C3HHeJ_T0051226.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30320585 30392852 - Sgms1 protein_coding retained_intron MGP_C3HHeJ_T0051227.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30323316 30339126 - Sgms1 protein_coding retained_intron MGP_C3HHeJ_T0051228.1 MGP_C3HHeJ_G0024771.1 mouse_genomes_project 19 30392551 30495769 - Sgms1 protein_coding retained_intron MGP_C3HHeJ_T0007037.1 MGP_C3HHeJ_G0005769.1 mouse_genomes_project 19 59894713 59896441 + Gm28351 lincRNA lincRNA MGP_C3HHeJ_T0003785.1 MGP_C3HHeJ_G0003389.1 mouse_genomes_project 19 4422485 4424214 + 1700105P06Rik antisense antisense MGP_C3HHeJ_T0050622.1 MGP_C3HHeJ_G0024535.1 mouse_genomes_project 19 5738518 5748817 + MGP_C3HHeJ_P0050622 Slc22a6 protein_coding protein_coding MGP_C3HHeJ_T0003806.1 MGP_C3HHeJ_G0003405.1 mouse_genomes_project 19 55845036 55847017 + Gm17197 antisense antisense MGP_C3HHeJ_T0051546.1 MGP_C3HHeJ_G0024890.1 mouse_genomes_project 19 42694954 42759788 - MGP_C3HHeJ_P0051546 Dnmbp protein_coding protein_coding MGP_C3HHeJ_T0051547.1 MGP_C3HHeJ_G0024890.1 mouse_genomes_project 19 42695080 42790471 - MGP_C3HHeJ_P0051547 Dnmbp protein_coding unknown_likely_coding MGP_C3HHeJ_T0050028.1 MGP_C3HHeJ_G0024370.1 mouse_genomes_project 19 791548 794845 + MGP_C3HHeJ_P0050028 Acy3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050029.1 MGP_C3HHeJ_G0024370.1 mouse_genomes_project 19 791637 796672 + MGP_C3HHeJ_P0050029 Acy3 protein_coding protein_coding MGP_C3HHeJ_T0099163.1 MGP_C3HHeJ_G0037357.1 mouse_genomes_project 19 42704181 42704288 - Gm24400 snRNA snRNA MGP_C3HHeJ_T0017477.1 MGP_C3HHeJ_G0015143.1 mouse_genomes_project 19 7172621 7176637 + Gm10143 processed_transcript processed_transcript MGP_C3HHeJ_T0017478.1 MGP_C3HHeJ_G0015143.1 mouse_genomes_project 19 7173440 7176635 + Gm10143 processed_transcript processed_transcript MGP_C3HHeJ_T0006984.1 MGP_C3HHeJ_G0005732.1 mouse_genomes_project 19 8376969 8378582 + Gm28935 lincRNA lincRNA MGP_C3HHeJ_T0051345.1 MGP_C3HHeJ_G0024822.1 mouse_genomes_project 19 36624990 36679428 + MGP_C3HHeJ_P0051345 Pde6c protein_coding protein_coding MGP_C3HHeJ_T0051346.1 MGP_C3HHeJ_G0024822.1 mouse_genomes_project 19 36624990 36679428 + MGP_C3HHeJ_P0051346 Pde6c protein_coding protein_coding MGP_C3HHeJ_T0051347.1 MGP_C3HHeJ_G0024822.1 mouse_genomes_project 19 36625155 36679220 + MGP_C3HHeJ_P0051347 Pde6c protein_coding unknown_likely_coding MGP_C3HHeJ_T0050977.1 MGP_C3HHeJ_G0024689.1 mouse_genomes_project 19 11803260 11959343 - MGP_C3HHeJ_P0050977 Tle4 protein_coding protein_coding MGP_C3HHeJ_T0050978.1 MGP_C3HHeJ_G0024689.1 mouse_genomes_project 19 11803338 11959411 - MGP_C3HHeJ_P0050978 Tle4 protein_coding protein_coding MGP_C3HHeJ_T0050820.1 MGP_C3HHeJ_G0024597.1 mouse_genomes_project 19 7947578 7952864 + MGP_C3HHeJ_P0050820 Ptgdr2 protein_coding protein_coding MGP_C3HHeJ_T0013237.1 MGP_C3HHeJ_G0011341.1 mouse_genomes_project 19 9759644 9760236 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050258.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385113 2390785 - MGP_C3HHeJ_P0050258 Mus81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050259.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385600 2391171 - MGP_C3HHeJ_P0050259 Mus81 protein_coding protein_coding MGP_C3HHeJ_T0050260.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385608 2386342 - Mus81 protein_coding retained_intron MGP_C3HHeJ_T0050261.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385619 2390704 - Mus81 protein_coding retained_intron MGP_C3HHeJ_T0050262.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385621 2386732 - Mus81 protein_coding retained_intron MGP_C3HHeJ_T0050263.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385622 2386736 - Mus81 protein_coding retained_intron MGP_C3HHeJ_T0050264.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2385626 2391054 - MGP_C3HHeJ_P0050264 Mus81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050265.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2386458 2387654 - Mus81 protein_coding retained_intron MGP_C3HHeJ_T0050266.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2386980 2388579 - Mus81 protein_coding processed_transcript MGP_C3HHeJ_T0050267.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2388256 2391035 - MGP_C3HHeJ_P0050267 Mus81 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050268.1 MGP_C3HHeJ_G0024445.1 mouse_genomes_project 19 2390236 2391080 - Mus81 protein_coding retained_intron MGP_C3HHeJ_T0101865.1 MGP_C3HHeJ_G0039830.1 mouse_genomes_project 19 6569497 6578570 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0006979.1 MGP_C3HHeJ_G0005727.1 mouse_genomes_project 19 2972900 2978704 + Gm10814 lincRNA lincRNA MGP_C3HHeJ_T0098279.1 MGP_C3HHeJ_G0036491.1 mouse_genomes_project 19 8794788 8794864 + Gm25443 scaRNA scaRNA MGP_C3HHeJ_T0051437.1 MGP_C3HHeJ_G0024854.1 mouse_genomes_project 19 40213833 40294541 + MGP_C3HHeJ_P0051437 Lcor protein_coding protein_coding MGP_C3HHeJ_T0051438.1 MGP_C3HHeJ_G0024854.1 mouse_genomes_project 19 40281938 40292076 + MGP_C3HHeJ_P0051438 Lcor protein_coding protein_coding MGP_C3HHeJ_T0007011.1 MGP_C3HHeJ_G0005751.1 mouse_genomes_project 19 42439080 42440632 - Gm20467 lincRNA lincRNA MGP_C3HHeJ_T0050852.1 MGP_C3HHeJ_G0024610.1 mouse_genomes_project 19 8335653 8350167 - MGP_C3HHeJ_P0050852 Ms4a7 protein_coding protein_coding MGP_C3HHeJ_T0050853.1 MGP_C3HHeJ_G0024610.1 mouse_genomes_project 19 8335653 8351616 - MGP_C3HHeJ_P0050853 Ms4a7 protein_coding protein_coding MGP_C3HHeJ_T0050854.1 MGP_C3HHeJ_G0024610.1 mouse_genomes_project 19 8336020 8351588 - MGP_C3HHeJ_P0050854 Ms4a7 protein_coding protein_coding MGP_C3HHeJ_T0050855.1 MGP_C3HHeJ_G0024610.1 mouse_genomes_project 19 8336023 8340212 - MGP_C3HHeJ_P0050855 Ms4a7 protein_coding protein_coding MGP_C3HHeJ_T0050856.1 MGP_C3HHeJ_G0024610.1 mouse_genomes_project 19 8336119 8351618 - Ms4a7 protein_coding retained_intron MGP_C3HHeJ_T0050617.1 MGP_C3HHeJ_G0024532.1 mouse_genomes_project 19 4819290 4844357 - MGP_C3HHeJ_P0050617 Slc22a26 protein_coding protein_coding MGP_C3HHeJ_T0050618.1 MGP_C3HHeJ_G0024532.1 mouse_genomes_project 19 4820229 4844446 - MGP_C3HHeJ_P0050618 Slc22a26 protein_coding protein_coding MGP_C3HHeJ_T0050704.1 MGP_C3HHeJ_G0024553.1 mouse_genomes_project 19 6022656 6024937 + MGP_C3HHeJ_P0050704 1810009A15Rik protein_coding protein_coding MGP_C3HHeJ_T0050705.1 MGP_C3HHeJ_G0024553.1 mouse_genomes_project 19 6022702 6024802 + 1810009A15Rik protein_coding retained_intron MGP_C3HHeJ_T0050706.1 MGP_C3HHeJ_G0024553.1 mouse_genomes_project 19 6022718 6024602 + MGP_C3HHeJ_P0050706 1810009A15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050707.1 MGP_C3HHeJ_G0024553.1 mouse_genomes_project 19 6022732 6024521 + 1810009A15Rik protein_coding retained_intron MGP_C3HHeJ_T0050708.1 MGP_C3HHeJ_G0024553.1 mouse_genomes_project 19 6022742 6024797 + 1810009A15Rik protein_coding retained_intron MGP_C3HHeJ_T0050546.1 MGP_C3HHeJ_G0024510.1 mouse_genomes_project 19 3983348 3986818 + MGP_C3HHeJ_P0050546 Ppp1r14b protein_coding protein_coding MGP_C3HHeJ_T0050547.1 MGP_C3HHeJ_G0024510.1 mouse_genomes_project 19 3983549 3985351 + MGP_C3HHeJ_P0050547 Ppp1r14b protein_coding unknown_likely_coding MGP_C3HHeJ_T0098098.1 MGP_C3HHeJ_G0036310.1 mouse_genomes_project 19 47355789 47355900 - Gm23857 rRNA rRNA MGP_C3HHeJ_T0099156.1 MGP_C3HHeJ_G0037350.1 mouse_genomes_project 19 24133676 24133801 - Gm25176 snRNA snRNA MGP_C3HHeJ_T0051792.1 MGP_C3HHeJ_G0024972.1 mouse_genomes_project 19 51498787 51499921 + MGP_C3HHeJ_P0051792 Ins1 protein_coding protein_coding MGP_C3HHeJ_T0050929.1 MGP_C3HHeJ_G0024649.1 mouse_genomes_project 19 9872406 9873471 + MGP_C3HHeJ_P0050929 Olfr1442 protein_coding protein_coding MGP_C3HHeJ_T0097885.1 MGP_C3HHeJ_G0036097.1 mouse_genomes_project 19 10284330 10284839 - pseudogene pseudogene MGP_C3HHeJ_T0050285.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2588817 2612720 - MGP_C3HHeJ_P0050285 Pcnx3 protein_coding protein_coding MGP_C3HHeJ_T0050286.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2588820 2598182 - Pcnx3 protein_coding retained_intron MGP_C3HHeJ_T0050287.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2588822 2611961 - MGP_C3HHeJ_P0050287 Pcnx3 protein_coding protein_coding MGP_C3HHeJ_T0050288.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2589418 2590381 - Pcnx3 protein_coding retained_intron MGP_C3HHeJ_T0050289.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2589598 2591165 - MGP_C3HHeJ_P0050289 Pcnx3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050290.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2590173 2590709 - Pcnx3 protein_coding retained_intron MGP_C3HHeJ_T0050291.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2597526 2608691 - MGP_C3HHeJ_P0050291 Pcnx3 protein_coding protein_coding MGP_C3HHeJ_T0050292.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2599157 2603597 - MGP_C3HHeJ_P0050292 Pcnx3 protein_coding protein_coding MGP_C3HHeJ_T0050293.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2603002 2607366 - MGP_C3HHeJ_P0050293 Pcnx3 protein_coding protein_coding MGP_C3HHeJ_T0050294.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2603422 2607896 - MGP_C3HHeJ_P0050294 Pcnx3 protein_coding protein_coding MGP_C3HHeJ_T0050295.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2603953 2605556 - Pcnx3 protein_coding retained_intron MGP_C3HHeJ_T0050296.1 MGP_C3HHeJ_G0024455.1 mouse_genomes_project 19 2607763 2612507 - Pcnx3 protein_coding retained_intron MGP_C3HHeJ_T0051152.1 MGP_C3HHeJ_G0024751.1 mouse_genomes_project 19 27303689 27309863 - MGP_C3HHeJ_P0051152 Insl6 protein_coding protein_coding MGP_C3HHeJ_T0051372.1 MGP_C3HHeJ_G0024832.1 mouse_genomes_project 19 37694077 37743325 + MGP_C3HHeJ_P0051372 Cyp2c66 protein_coding protein_coding MGP_C3HHeJ_T0051373.1 MGP_C3HHeJ_G0024832.1 mouse_genomes_project 19 37694089 37743644 + MGP_C3HHeJ_P0051373 Cyp2c66 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051644.1 MGP_C3HHeJ_G0024924.1 mouse_genomes_project 19 44721541 44754537 - MGP_C3HHeJ_P0051644 Mgea5 protein_coding protein_coding MGP_C3HHeJ_T0000983.1 MGP_C3HHeJ_G0000920.1 mouse_genomes_project 19 1624950 1628019 - TEC TEC MGP_C3HHeJ_T0050020.1 MGP_C3HHeJ_G0024366.1 mouse_genomes_project 19 694943 698836 - MGP_C3HHeJ_P0050020 Ndufs8 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051233.1 MGP_C3HHeJ_G0024775.1 mouse_genomes_project 19 30890774 30961909 + MGP_C3HHeJ_P0051233 Pten protein_coding protein_coding MGP_C3HHeJ_T0051234.1 MGP_C3HHeJ_G0024775.1 mouse_genomes_project 19 30890872 30937489 + Pten protein_coding retained_intron MGP_C3HHeJ_T0051235.1 MGP_C3HHeJ_G0024775.1 mouse_genomes_project 19 30945889 30952636 + Pten protein_coding retained_intron MGP_C3HHeJ_T0050871.1 MGP_C3HHeJ_G0024616.1 mouse_genomes_project 19 8585783 8622400 + MGP_C3HHeJ_P0050871 Ms4a6b protein_coding protein_coding MGP_C3HHeJ_T0050872.1 MGP_C3HHeJ_G0024616.1 mouse_genomes_project 19 8587865 8591127 + Ms4a6b protein_coding retained_intron MGP_C3HHeJ_T0050873.1 MGP_C3HHeJ_G0024616.1 mouse_genomes_project 19 8590942 8596689 + MGP_C3HHeJ_P0050873 Ms4a6b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050196.1 MGP_C3HHeJ_G0024418.1 mouse_genomes_project 19 1857649 1863266 - MGP_C3HHeJ_P0050196 Npas4 protein_coding protein_coding MGP_C3HHeJ_T0050227.1 MGP_C3HHeJ_G0024435.1 mouse_genomes_project 19 2267655 2272361 + MGP_C3HHeJ_P0050227 Eif1ad protein_coding protein_coding MGP_C3HHeJ_T0051298.1 MGP_C3HHeJ_G0024806.1 mouse_genomes_project 19 35127312 35132229 - MGP_C3HHeJ_P0051298 Ppp1r3c protein_coding protein_coding MGP_C3HHeJ_T0050311.1 MGP_C3HHeJ_G0024462.1 mouse_genomes_project 19 2688560 2701481 - MGP_C3HHeJ_P0050311 Scyl1 protein_coding protein_coding MGP_C3HHeJ_T0050783.1 MGP_C3HHeJ_G0024584.1 mouse_genomes_project 19 7561378 7572041 + MGP_C3HHeJ_P0050783 Cyb561a3 protein_coding protein_coding MGP_C3HHeJ_T0051761.1 MGP_C3HHeJ_G0024962.1 mouse_genomes_project 19 46682005 46745016 + MGP_C3HHeJ_P0051761 Slk protein_coding protein_coding MGP_C3HHeJ_T0051762.1 MGP_C3HHeJ_G0024962.1 mouse_genomes_project 19 46682346 46742224 + MGP_C3HHeJ_P0051762 Slk protein_coding protein_coding MGP_C3HHeJ_T0051763.1 MGP_C3HHeJ_G0024962.1 mouse_genomes_project 19 46720607 46725269 + Slk protein_coding retained_intron MGP_C3HHeJ_T0051764.1 MGP_C3HHeJ_G0024962.1 mouse_genomes_project 19 46722598 46725769 + Slk protein_coding retained_intron MGP_C3HHeJ_T0051765.1 MGP_C3HHeJ_G0024962.1 mouse_genomes_project 19 46734352 46735677 + Slk protein_coding retained_intron MGP_C3HHeJ_T0051924.1 MGP_C3HHeJ_G0025004.1 mouse_genomes_project 19 56880689 56912800 + MGP_C3HHeJ_P0051924 Fam160b1 protein_coding protein_coding MGP_C3HHeJ_T0050154.1 MGP_C3HHeJ_G0024403.1 mouse_genomes_project 19 1484787 1559254 - MGP_C3HHeJ_P0050154 Gm960 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050155.1 MGP_C3HHeJ_G0024403.1 mouse_genomes_project 19 1484903 1559716 - MGP_C3HHeJ_P0050155 Gm960 protein_coding protein_coding MGP_C3HHeJ_T0050156.1 MGP_C3HHeJ_G0024403.1 mouse_genomes_project 19 1506885 1559363 - MGP_C3HHeJ_P0050156 Gm960 protein_coding protein_coding MGP_C3HHeJ_T0050518.1 MGP_C3HHeJ_G0024500.1 mouse_genomes_project 19 3829163 3840611 - MGP_C3HHeJ_P0050518 Rps6ka4 protein_coding protein_coding MGP_C3HHeJ_T0050842.1 MGP_C3HHeJ_G0024607.1 mouse_genomes_project 19 8255219 8275613 - MGP_C3HHeJ_P0050842 Ms4a1 protein_coding protein_coding MGP_C3HHeJ_T0050843.1 MGP_C3HHeJ_G0024607.1 mouse_genomes_project 19 8256421 8260229 - Ms4a1 protein_coding retained_intron MGP_C3HHeJ_T0050844.1 MGP_C3HHeJ_G0024607.1 mouse_genomes_project 19 8257209 8264366 - MGP_C3HHeJ_P0050844 Ms4a1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050845.1 MGP_C3HHeJ_G0024607.1 mouse_genomes_project 19 8259534 8275517 - Ms4a1 protein_coding retained_intron MGP_C3HHeJ_T0050198.1 MGP_C3HHeJ_G0024420.1 mouse_genomes_project 19 1915239 1917612 + MGP_C3HHeJ_P0050198 B4gat1 protein_coding protein_coding MGP_C3HHeJ_T0098257.1 MGP_C3HHeJ_G0036469.1 mouse_genomes_project 19 2758879 2758935 - Gm27702 sRNA sRNA MGP_C3HHeJ_T0050939.1 MGP_C3HHeJ_G0024653.1 mouse_genomes_project 19 9966065 9968038 - MGP_C3HHeJ_P0050939 Cntf protein_coding protein_coding MGP_C3HHeJ_T0050553.1 MGP_C3HHeJ_G0024513.1 mouse_genomes_project 19 3997423 4002126 - MGP_C3HHeJ_P0050553 Dnajc4 protein_coding protein_coding MGP_C3HHeJ_T0099154.1 MGP_C3HHeJ_G0037348.1 mouse_genomes_project 19 21010715 21010822 + Gm24263 snRNA snRNA MGP_C3HHeJ_T0050958.1 MGP_C3HHeJ_G0024670.1 mouse_genomes_project 19 10448494 10449427 + MGP_C3HHeJ_P0050958 Olfr1463 protein_coding protein_coding MGP_C3HHeJ_T0051238.1 MGP_C3HHeJ_G0024778.1 mouse_genomes_project 19 31679671 31802691 - MGP_C3HHeJ_P0051238 Lipo2 protein_coding protein_coding MGP_C3HHeJ_T0051903.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56543325 56729386 - MGP_C3HHeJ_P0051903 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051904.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56543482 56633750 - MGP_C3HHeJ_P0051904 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051905.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56543858 56633750 - MGP_C3HHeJ_P0051905 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051906.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56543865 56711278 - MGP_C3HHeJ_P0051906 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051907.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56546870 56754964 - MGP_C3HHeJ_P0051907 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051908.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547013 56633748 - MGP_C3HHeJ_P0051908 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051909.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547074 56633654 - MGP_C3HHeJ_P0051909 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051910.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547291 56711103 - MGP_C3HHeJ_P0051910 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051911.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547573 56755496 - MGP_C3HHeJ_P0051911 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051912.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547611 56729319 - MGP_C3HHeJ_P0051912 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051913.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547747 56711038 - MGP_C3HHeJ_P0051913 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051914.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547789 56711143 - MGP_C3HHeJ_P0051914 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051915.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56547858 56833952 - Ablim1 protein_coding retained_intron MGP_C3HHeJ_T0051916.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56550048 56557859 - Ablim1 protein_coding processed_transcript MGP_C3HHeJ_T0051917.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56551670 56555558 - Ablim1 protein_coding retained_intron MGP_C3HHeJ_T0051918.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56571493 56649914 - Ablim1 protein_coding retained_intron MGP_C3HHeJ_T0051919.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56587363 56649883 - Ablim1 protein_coding processed_transcript MGP_C3HHeJ_T0051920.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56630787 56633765 - Ablim1 protein_coding processed_transcript MGP_C3HHeJ_T0051921.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56645464 56649914 - Ablim1 protein_coding processed_transcript MGP_C3HHeJ_T0051922.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56645806 56833944 - MGP_C3HHeJ_P0051922 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0051923.1 MGP_C3HHeJ_G0025003.1 mouse_genomes_project 19 56646046 56695997 - MGP_C3HHeJ_P0051923 Ablim1 protein_coding protein_coding MGP_C3HHeJ_T0050209.1 MGP_C3HHeJ_G0024426.1 mouse_genomes_project 19 1970480 1976002 - MGP_C3HHeJ_P0050209 Cnih2 protein_coding protein_coding MGP_C3HHeJ_T0051894.1 MGP_C3HHeJ_G0025001.1 mouse_genomes_project 19 56379555 56417970 + MGP_C3HHeJ_P0051894 Vwa2 protein_coding protein_coding MGP_C3HHeJ_T0050865.1 MGP_C3HHeJ_G0024614.1 mouse_genomes_project 19 8512533 8621369 + MGP_C3HHeJ_P0050865 Ms4a6c protein_coding protein_coding MGP_C3HHeJ_T0050866.1 MGP_C3HHeJ_G0024614.1 mouse_genomes_project 19 8512592 8515913 + Ms4a6c protein_coding retained_intron MGP_C3HHeJ_T0050739.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6966153 7001604 + MGP_C3HHeJ_P0050739 Rab3il1 protein_coding protein_coding MGP_C3HHeJ_T0050740.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6979540 6993594 + MGP_C3HHeJ_P0050740 Rab3il1 protein_coding protein_coding MGP_C3HHeJ_T0050741.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6979568 6993495 + MGP_C3HHeJ_P0050741 Rab3il1 protein_coding protein_coding MGP_C3HHeJ_T0050742.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6982717 7001474 + MGP_C3HHeJ_P0050742 Rab3il1 protein_coding protein_coding MGP_C3HHeJ_T0050743.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6982718 7004398 + MGP_C3HHeJ_P0050743 Rab3il1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050744.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6982718 7001473 + MGP_C3HHeJ_P0050744 Rab3il1 protein_coding protein_coding MGP_C3HHeJ_T0050745.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6982789 6994326 + MGP_C3HHeJ_P0050745 Rab3il1 protein_coding protein_coding MGP_C3HHeJ_T0050746.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6982873 7004396 + MGP_C3HHeJ_P0050746 Rab3il1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050747.1 MGP_C3HHeJ_G0024569.1 mouse_genomes_project 19 6997687 6999828 + Rab3il1 protein_coding retained_intron MGP_C3HHeJ_T0051873.1 MGP_C3HHeJ_G0024995.1 mouse_genomes_project 19 55943755 55974820 + MGP_C3HHeJ_P0051873 Plekhs1 protein_coding protein_coding MGP_C3HHeJ_T0051874.1 MGP_C3HHeJ_G0024995.1 mouse_genomes_project 19 55943755 55974820 + MGP_C3HHeJ_P0051874 Plekhs1 protein_coding protein_coding MGP_C3HHeJ_T0051875.1 MGP_C3HHeJ_G0024995.1 mouse_genomes_project 19 55946528 55973939 + MGP_C3HHeJ_P0051875 Plekhs1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0011389.1 MGP_C3HHeJ_G0009522.1 mouse_genomes_project 19 40496979 40497217 + Gm22601 misc_RNA misc_RNA MGP_C3HHeJ_T0050774.1 MGP_C3HHeJ_G0024580.1 mouse_genomes_project 19 7485707 7509938 - MGP_C3HHeJ_P0050774 Sdhaf2 protein_coding protein_coding MGP_C3HHeJ_T0051364.1 MGP_C3HHeJ_G0024829.1 mouse_genomes_project 19 37495208 37540998 + MGP_C3HHeJ_P0051364 Hells protein_coding protein_coding MGP_C3HHeJ_T0051365.1 MGP_C3HHeJ_G0024829.1 mouse_genomes_project 19 37495323 37505327 + Hells protein_coding retained_intron MGP_C3HHeJ_T0051366.1 MGP_C3HHeJ_G0024829.1 mouse_genomes_project 19 37495467 37508741 + MGP_C3HHeJ_P0051366 Hells protein_coding protein_coding MGP_C3HHeJ_T0051367.1 MGP_C3HHeJ_G0024829.1 mouse_genomes_project 19 37495683 37518360 + Hells protein_coding processed_transcript MGP_C3HHeJ_T0051368.1 MGP_C3HHeJ_G0024829.1 mouse_genomes_project 19 37498801 37505428 + Hells protein_coding retained_intron MGP_C3HHeJ_T0051369.1 MGP_C3HHeJ_G0024829.1 mouse_genomes_project 19 37508515 37515302 + Hells protein_coding processed_transcript MGP_C3HHeJ_T0051485.1 MGP_C3HHeJ_G0024871.1 mouse_genomes_project 19 40889901 40895688 - MGP_C3HHeJ_P0051485 Avpi1 protein_coding protein_coding MGP_C3HHeJ_T0051486.1 MGP_C3HHeJ_G0024871.1 mouse_genomes_project 19 40891407 40895618 - MGP_C3HHeJ_P0051486 Avpi1 protein_coding protein_coding MGP_C3HHeJ_T0051601.1 MGP_C3HHeJ_G0024909.1 mouse_genomes_project 19 43897018 43913122 + MGP_C3HHeJ_P0051601 Sema4g protein_coding protein_coding MGP_C3HHeJ_T0051602.1 MGP_C3HHeJ_G0024909.1 mouse_genomes_project 19 43897192 43913127 + MGP_C3HHeJ_P0051602 Sema4g protein_coding unknown_likely_coding MGP_C3HHeJ_T0051603.1 MGP_C3HHeJ_G0024909.1 mouse_genomes_project 19 43897208 43913122 + MGP_C3HHeJ_P0051603 Sema4g protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051604.1 MGP_C3HHeJ_G0024909.1 mouse_genomes_project 19 43900085 43913119 + MGP_C3HHeJ_P0051604 Sema4g protein_coding protein_coding MGP_C3HHeJ_T0050407.1 MGP_C3HHeJ_G0024488.1 mouse_genomes_project 19 3203731 3205120 + MGP_C3HHeJ_P0050407 Gpha2 protein_coding protein_coding MGP_C3HHeJ_T0050408.1 MGP_C3HHeJ_G0024488.1 mouse_genomes_project 19 3203739 3205120 + MGP_C3HHeJ_P0050408 Gpha2 protein_coding protein_coding MGP_C3HHeJ_T0050736.1 MGP_C3HHeJ_G0024567.1 mouse_genomes_project 19 6942438 6944859 + MGP_C3HHeJ_P0050736 Fth1 protein_coding protein_coding MGP_C3HHeJ_T0051349.1 MGP_C3HHeJ_G0024824.1 mouse_genomes_project 19 36767885 36805635 + MGP_C3HHeJ_P0051349 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051350.1 MGP_C3HHeJ_G0024824.1 mouse_genomes_project 19 36767981 36769126 + protein_coding retained_intron MGP_C3HHeJ_T0051351.1 MGP_C3HHeJ_G0024824.1 mouse_genomes_project 19 36768028 36772270 + protein_coding retained_intron MGP_C3HHeJ_T0051352.1 MGP_C3HHeJ_G0024824.1 mouse_genomes_project 19 36768098 36818008 + MGP_C3HHeJ_P0051352 protein_coding protein_coding MGP_C3HHeJ_T0051353.1 MGP_C3HHeJ_G0024824.1 mouse_genomes_project 19 36768619 36808933 + protein_coding retained_intron MGP_C3HHeJ_T0051961.1 MGP_C3HHeJ_G0025023.1 mouse_genomes_project 19 60129599 60131165 - MGP_C3HHeJ_P0051961 Prlhr protein_coding protein_coding MGP_C3HHeJ_T0050031.1 MGP_C3HHeJ_G0024372.1 mouse_genomes_project 19 808863 810387 + MGP_C3HHeJ_P0050031 Nudt8 protein_coding protein_coding MGP_C3HHeJ_T0050032.1 MGP_C3HHeJ_G0024372.1 mouse_genomes_project 19 808909 815014 + MGP_C3HHeJ_P0050032 Nudt8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050033.1 MGP_C3HHeJ_G0024372.1 mouse_genomes_project 19 808914 810385 + MGP_C3HHeJ_P0050033 Nudt8 protein_coding protein_coding MGP_C3HHeJ_T0051834.1 MGP_C3HHeJ_G0024988.1 mouse_genomes_project 19 54682741 54727279 + MGP_C3HHeJ_P0051834 Acsl5 protein_coding protein_coding MGP_C3HHeJ_T0051940.1 MGP_C3HHeJ_G0025011.1 mouse_genomes_project 19 58359661 58378870 + MGP_C3HHeJ_P0051940 Pnliprp2 protein_coding protein_coding MGP_C3HHeJ_T0099169.1 MGP_C3HHeJ_G0037363.1 mouse_genomes_project 19 60848519 60850028 - Gm23102 snRNA snRNA MGP_C3HHeJ_T0050785.1 MGP_C3HHeJ_G0024586.1 mouse_genomes_project 19 7589116 7613333 + MGP_C3HHeJ_P0050785 Ddb1 protein_coding protein_coding MGP_C3HHeJ_T0050922.1 MGP_C3HHeJ_G0024647.1 mouse_genomes_project 19 9792560 9819596 + MGP_C3HHeJ_P0050922 Gm4952 protein_coding protein_coding MGP_C3HHeJ_T0050923.1 MGP_C3HHeJ_G0024647.1 mouse_genomes_project 19 9792602 9820974 + MGP_C3HHeJ_P0050923 Gm4952 protein_coding protein_coding MGP_C3HHeJ_T0051145.1 MGP_C3HHeJ_G0024747.1 mouse_genomes_project 19 26957876 26985712 + MGP_C3HHeJ_P0051145 Cdc37l1 protein_coding protein_coding MGP_C3HHeJ_T0051146.1 MGP_C3HHeJ_G0024747.1 mouse_genomes_project 19 26957920 26980945 + MGP_C3HHeJ_P0051146 Cdc37l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051212.1 MGP_C3HHeJ_G0024769.1 mouse_genomes_project 19 29961897 30044401 + MGP_C3HHeJ_P0051212 A1cf protein_coding protein_coding MGP_C3HHeJ_T0051213.1 MGP_C3HHeJ_G0024769.1 mouse_genomes_project 19 29987358 30042503 + MGP_C3HHeJ_P0051213 A1cf protein_coding unknown_likely_coding MGP_C3HHeJ_T0050519.1 MGP_C3HHeJ_G0024501.1 mouse_genomes_project 19 3844632 3858221 - MGP_C3HHeJ_P0050519 Ccdc88b protein_coding protein_coding MGP_C3HHeJ_T0003795.1 MGP_C3HHeJ_G0003396.1 mouse_genomes_project 19 37298362 37302230 - Gm28991 antisense antisense MGP_C3HHeJ_T0007023.1 MGP_C3HHeJ_G0005760.1 mouse_genomes_project 19 52358441 52366609 + 1700054A03Rik lincRNA lincRNA MGP_C3HHeJ_T0007024.1 MGP_C3HHeJ_G0005760.1 mouse_genomes_project 19 52358475 52366609 + 1700054A03Rik lincRNA lincRNA MGP_C3HHeJ_T0051210.1 MGP_C3HHeJ_G0024768.1 mouse_genomes_project 19 29149323 29153073 + MGP_C3HHeJ_P0051210 Cstf2t protein_coding protein_coding MGP_C3HHeJ_T0050966.1 MGP_C3HHeJ_G0024678.1 mouse_genomes_project 19 10936858 10937800 + MGP_C3HHeJ_P0050966 Olfr1489 protein_coding protein_coding MGP_C3HHeJ_T0006969.1 MGP_C3HHeJ_G0005723.1 mouse_genomes_project 19 991146 995865 + Gm17552 lincRNA lincRNA MGP_C3HHeJ_T0051163.1 MGP_C3HHeJ_G0024754.1 mouse_genomes_project 19 27355109 27377246 + MGP_C3HHeJ_P0051163 Cd274 protein_coding protein_coding MGP_C3HHeJ_T0050946.1 MGP_C3HHeJ_G0024658.1 mouse_genomes_project 19 10108203 10109306 - MGP_C3HHeJ_P0050946 Olfr1447 protein_coding protein_coding MGP_C3HHeJ_T0051579.1 MGP_C3HHeJ_G0024901.1 mouse_genomes_project 19 43277616 43290867 - MGP_C3HHeJ_P0051579 Scd1 protein_coding protein_coding MGP_C3HHeJ_T0050614.1 MGP_C3HHeJ_G0024531.1 mouse_genomes_project 19 4727690 4761948 - MGP_C3HHeJ_P0050614 Slc22a19 protein_coding protein_coding MGP_C3HHeJ_T0050615.1 MGP_C3HHeJ_G0024531.1 mouse_genomes_project 19 4732966 4761917 - Slc22a19 protein_coding retained_intron MGP_C3HHeJ_T0050616.1 MGP_C3HHeJ_G0024531.1 mouse_genomes_project 19 4757324 4761948 - Slc22a19 protein_coding retained_intron MGP_C3HHeJ_T0051489.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40935824 40950628 + Zfyve27 protein_coding retained_intron MGP_C3HHeJ_T0051490.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40942436 40967456 + MGP_C3HHeJ_P0051490 Zfyve27 protein_coding protein_coding MGP_C3HHeJ_T0051491.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40942463 40964632 + MGP_C3HHeJ_P0051491 Zfyve27 protein_coding protein_coding MGP_C3HHeJ_T0051492.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40942569 40945076 + Zfyve27 protein_coding retained_intron MGP_C3HHeJ_T0051493.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40951722 40957059 + MGP_C3HHeJ_P0051493 Zfyve27 protein_coding protein_coding MGP_C3HHeJ_T0051494.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40956384 40957728 + Zfyve27 protein_coding retained_intron MGP_C3HHeJ_T0051495.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40958234 40963429 + Zfyve27 protein_coding retained_intron MGP_C3HHeJ_T0051496.1 MGP_C3HHeJ_G0024873.1 mouse_genomes_project 19 40958508 40963809 + Zfyve27 protein_coding retained_intron MGP_C3HHeJ_T0013257.1 MGP_C3HHeJ_G0011361.1 mouse_genomes_project 19 51021835 51022213 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050931.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895327 9919916 + MGP_C3HHeJ_P0050931 Keg1 protein_coding protein_coding MGP_C3HHeJ_T0050932.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895328 9916067 + Keg1 protein_coding processed_transcript MGP_C3HHeJ_T0050933.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895334 9918584 + Keg1 protein_coding retained_intron MGP_C3HHeJ_T0050934.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895334 9919021 + MGP_C3HHeJ_P0050934 Keg1 protein_coding protein_coding MGP_C3HHeJ_T0050935.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895345 9914851 + Keg1 protein_coding retained_intron MGP_C3HHeJ_T0050936.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895355 9914773 + Keg1 protein_coding retained_intron MGP_C3HHeJ_T0050937.1 MGP_C3HHeJ_G0024651.1 mouse_genomes_project 19 9895355 9919131 + MGP_C3HHeJ_P0050937 Keg1 protein_coding protein_coding MGP_C3HHeJ_T0050342.1 MGP_C3HHeJ_G0024473.1 mouse_genomes_project 19 3023673 3025312 + MGP_C3HHeJ_P0050342 Gm9843 protein_coding protein_coding MGP_C3HHeJ_T0050343.1 MGP_C3HHeJ_G0024473.1 mouse_genomes_project 19 3023673 3025312 + MGP_C3HHeJ_P0050343 Gm9843 protein_coding protein_coding MGP_C3HHeJ_T0050345.1 MGP_C3HHeJ_G0024473.1 mouse_genomes_project 19 3023752 3025312 + MGP_C3HHeJ_P0050345 Gm9843 protein_coding protein_coding MGP_C3HHeJ_T0051022.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17983858 18000863 - MGP_C3HHeJ_P0051022 Anxa1 protein_coding protein_coding MGP_C3HHeJ_T0051023.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17983986 18000591 - Anxa1 protein_coding processed_transcript MGP_C3HHeJ_T0051024.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17983986 17985692 - Anxa1 protein_coding retained_intron MGP_C3HHeJ_T0051025.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17987745 17988568 - Anxa1 protein_coding retained_intron MGP_C3HHeJ_T0051026.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17987745 17990008 - Anxa1 protein_coding retained_intron MGP_C3HHeJ_T0051027.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17988096 17992108 - Anxa1 protein_coding retained_intron MGP_C3HHeJ_T0051028.1 MGP_C3HHeJ_G0024706.1 mouse_genomes_project 19 17989645 18000570 - Anxa1 protein_coding processed_transcript MGP_C3HHeJ_T0051214.1 MGP_C3HHeJ_G0024770.1 mouse_genomes_project 19 30085053 30162200 - MGP_C3HHeJ_P0051214 Asah2 protein_coding protein_coding MGP_C3HHeJ_T0051037.1 MGP_C3HHeJ_G0024711.1 mouse_genomes_project 19 19020836 19104011 - MGP_C3HHeJ_P0051037 Gda protein_coding protein_coding MGP_C3HHeJ_T0051038.1 MGP_C3HHeJ_G0024711.1 mouse_genomes_project 19 19048234 19104109 - Gda protein_coding retained_intron MGP_C3HHeJ_T0050911.1 MGP_C3HHeJ_G0024638.1 mouse_genomes_project 19 9475915 9481413 + MGP_C3HHeJ_P0050911 Olfr1434 protein_coding protein_coding MGP_C3HHeJ_T0100413.1 MGP_C3HHeJ_G0038607.1 mouse_genomes_project 19 21364796 21364898 + Gm22144 snoRNA snoRNA MGP_C3HHeJ_T0050079.1 MGP_C3HHeJ_G0024383.1 mouse_genomes_project 19 961810 967739 + MGP_C3HHeJ_P0050079 Gpr152 protein_coding protein_coding MGP_C3HHeJ_T0050180.1 MGP_C3HHeJ_G0024413.1 mouse_genomes_project 19 1745886 1752590 + Zdhhc24 protein_coding processed_transcript MGP_C3HHeJ_T0050181.1 MGP_C3HHeJ_G0024413.1 mouse_genomes_project 19 1745890 1752590 + MGP_C3HHeJ_P0050181 Zdhhc24 protein_coding protein_coding MGP_C3HHeJ_T0050182.1 MGP_C3HHeJ_G0024413.1 mouse_genomes_project 19 1745908 1752588 + Zdhhc24 protein_coding processed_transcript MGP_C3HHeJ_T0050183.1 MGP_C3HHeJ_G0024413.1 mouse_genomes_project 19 1745922 1752589 + MGP_C3HHeJ_P0050183 Zdhhc24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050184.1 MGP_C3HHeJ_G0024413.1 mouse_genomes_project 19 1745941 1750974 + MGP_C3HHeJ_P0050184 Zdhhc24 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050185.1 MGP_C3HHeJ_G0024413.1 mouse_genomes_project 19 1746986 1750957 + Zdhhc24 protein_coding processed_transcript MGP_C3HHeJ_T0050558.1 MGP_C3HHeJ_G0024516.1 mouse_genomes_project 19 4008468 4031572 - MGP_C3HHeJ_P0050558 Fermt3 protein_coding protein_coding MGP_C3HHeJ_T0006987.1 MGP_C3HHeJ_G0005735.1 mouse_genomes_project 19 18016993 18034521 + 1500015L24Rik lincRNA lincRNA MGP_C3HHeJ_T0006988.1 MGP_C3HHeJ_G0005735.1 mouse_genomes_project 19 18034099 18034513 + 1500015L24Rik lincRNA lincRNA MGP_C3HHeJ_T0050241.1 MGP_C3HHeJ_G0024442.1 mouse_genomes_project 19 2362727 2367170 + MGP_C3HHeJ_P0050241 Fibp protein_coding protein_coding MGP_C3HHeJ_T0050242.1 MGP_C3HHeJ_G0024442.1 mouse_genomes_project 19 2362770 2367175 + MGP_C3HHeJ_P0050242 Fibp protein_coding unknown_likely_coding MGP_C3HHeJ_T0017503.1 MGP_C3HHeJ_G0015152.1 mouse_genomes_project 19 45265092 45268226 - Gm16726 processed_transcript processed_transcript MGP_C3HHeJ_T0050910.1 MGP_C3HHeJ_G0024637.1 mouse_genomes_project 19 9412998 9413937 - MGP_C3HHeJ_P0050910 Olfr262 protein_coding protein_coding MGP_C3HHeJ_T0050147.1 MGP_C3HHeJ_G0024399.1 mouse_genomes_project 19 1347298 1349092 - MGP_C3HHeJ_P0050147 2010003K11Rik protein_coding protein_coding MGP_C3HHeJ_T0050731.1 MGP_C3HHeJ_G0024563.1 mouse_genomes_project 19 6238226 6242539 - MGP_C3HHeJ_P0050731 Scgb1a1 protein_coding protein_coding MGP_C3HHeJ_T0051978.1 MGP_C3HHeJ_G0025030.1 mouse_genomes_project 19 60566543 60767534 + MGP_C3HHeJ_P0051978 Grk5 protein_coding protein_coding MGP_C3HHeJ_T0050090.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978679 984826 - MGP_C3HHeJ_P0050090 Rps6kb2 protein_coding protein_coding MGP_C3HHeJ_T0050091.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978685 984877 - MGP_C3HHeJ_P0050091 Rps6kb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050092.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978688 984897 - Rps6kb2 protein_coding retained_intron MGP_C3HHeJ_T0050093.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978688 980046 - Rps6kb2 protein_coding retained_intron MGP_C3HHeJ_T0050094.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978688 984881 - MGP_C3HHeJ_P0050094 Rps6kb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050095.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978879 983911 - Rps6kb2 protein_coding processed_transcript MGP_C3HHeJ_T0050096.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 978879 984866 - MGP_C3HHeJ_P0050096 Rps6kb2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050097.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 983840 984881 - Rps6kb2 protein_coding processed_transcript MGP_C3HHeJ_T0050098.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 984097 984911 - Rps6kb2 protein_coding retained_intron MGP_C3HHeJ_T0050099.1 MGP_C3HHeJ_G0024386.1 mouse_genomes_project 19 984395 984935 - Rps6kb2 protein_coding processed_transcript MGP_C3HHeJ_T0010207.1 MGP_C3HHeJ_G0008340.1 mouse_genomes_project 19 3918006 3918097 - Mir6990 miRNA miRNA MGP_C3HHeJ_T0050051.1 MGP_C3HHeJ_G0024377.1 mouse_genomes_project 19 875029 876999 - MGP_C3HHeJ_P0050051 BC021614 protein_coding protein_coding MGP_C3HHeJ_T0050052.1 MGP_C3HHeJ_G0024377.1 mouse_genomes_project 19 875030 876848 - MGP_C3HHeJ_P0050052 BC021614 protein_coding protein_coding MGP_C3HHeJ_T0050165.1 MGP_C3HHeJ_G0024407.1 mouse_genomes_project 19 1648706 1658103 - MGP_C3HHeJ_P0050165 protein_coding protein_coding MGP_C3HHeJ_T0050169.1 MGP_C3HHeJ_G0024407.1 mouse_genomes_project 19 1654481 1658085 - protein_coding retained_intron MGP_C3HHeJ_T0013233.1 MGP_C3HHeJ_G0011337.1 mouse_genomes_project 19 8101429 8102748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051717.1 MGP_C3HHeJ_G0024941.1 mouse_genomes_project 19 45516216 45531604 + MGP_C3HHeJ_P0051717 Trim8 protein_coding protein_coding MGP_C3HHeJ_T0050901.1 MGP_C3HHeJ_G0024628.1 mouse_genomes_project 19 9005957 9007009 + MGP_C3HHeJ_P0050901 Olfr1420 protein_coding protein_coding MGP_C3HHeJ_T0010224.1 MGP_C3HHeJ_G0008357.1 mouse_genomes_project 19 33146934 33147021 - Mir107 miRNA miRNA MGP_C3HHeJ_T0051229.1 MGP_C3HHeJ_G0024772.1 mouse_genomes_project 19 30596305 30624628 + MGP_C3HHeJ_P0051229 Minpp1 protein_coding protein_coding MGP_C3HHeJ_T0101864.1 MGP_C3HHeJ_G0039829.1 mouse_genomes_project 19 6569467 6579315 + unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0051498.1 MGP_C3HHeJ_G0024875.1 mouse_genomes_project 19 41020099 41047450 + MGP_C3HHeJ_P0051498 Golga7b protein_coding protein_coding MGP_C3HHeJ_T0051499.1 MGP_C3HHeJ_G0024875.1 mouse_genomes_project 19 41031202 41047450 + MGP_C3HHeJ_P0051499 Golga7b protein_coding protein_coding MGP_C3HHeJ_T0050528.1 MGP_C3HHeJ_G0024504.1 mouse_genomes_project 19 3914787 3925423 - MGP_C3HHeJ_P0050528 Esrra protein_coding protein_coding MGP_C3HHeJ_T0050529.1 MGP_C3HHeJ_G0024504.1 mouse_genomes_project 19 3916262 3925376 - MGP_C3HHeJ_P0050529 Esrra protein_coding protein_coding MGP_C3HHeJ_T0050530.1 MGP_C3HHeJ_G0024504.1 mouse_genomes_project 19 3916575 3925428 - Esrra protein_coding processed_transcript MGP_C3HHeJ_T0050531.1 MGP_C3HHeJ_G0024504.1 mouse_genomes_project 19 3923519 3925382 - Esrra protein_coding retained_intron MGP_C3HHeJ_T0050532.1 MGP_C3HHeJ_G0024504.1 mouse_genomes_project 19 3923693 3924666 - MGP_C3HHeJ_P0050532 Esrra protein_coding protein_coding MGP_C3HHeJ_T0049965.1 MGP_C3HHeJ_G0024358.1 mouse_genomes_project 19 147232 156496 + MGP_C3HHeJ_P0049965 Mtl5 protein_coding protein_coding MGP_C3HHeJ_T0049966.1 MGP_C3HHeJ_G0024358.1 mouse_genomes_project 19 147297 165438 + MGP_C3HHeJ_P0049966 Mtl5 protein_coding protein_coding MGP_C3HHeJ_T0051072.1 MGP_C3HHeJ_G0024729.1 mouse_genomes_project 19 22454352 22631780 - MGP_C3HHeJ_P0051072 Pgm5 protein_coding protein_coding MGP_C3HHeJ_T0051073.1 MGP_C3HHeJ_G0024729.1 mouse_genomes_project 19 22455893 22537007 - Pgm5 protein_coding processed_transcript MGP_C3HHeJ_T0051074.1 MGP_C3HHeJ_G0024729.1 mouse_genomes_project 19 22590418 22631612 - Pgm5 protein_coding retained_intron MGP_C3HHeJ_T0051075.1 MGP_C3HHeJ_G0024729.1 mouse_genomes_project 19 22590519 22631577 - Pgm5 protein_coding retained_intron MGP_C3HHeJ_T0051065.1 MGP_C3HHeJ_G0024724.1 mouse_genomes_project 19 21700818 21762441 - MGP_C3HHeJ_P0051065 Fam189a2 protein_coding protein_coding MGP_C3HHeJ_T0017459.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5844527 5847492 + Snhg1 processed_transcript lincRNA MGP_C3HHeJ_T0017460.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5844539 5847490 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017461.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5844539 5847491 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017462.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845053 5847492 + Snhg1 processed_transcript lincRNA MGP_C3HHeJ_T0017463.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845179 5846941 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017464.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845188 5845901 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017465.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845195 5847394 + Snhg1 processed_transcript lincRNA MGP_C3HHeJ_T0017466.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845206 5847492 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017467.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845210 5846390 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017468.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845404 5846352 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017469.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845441 5846884 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017470.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845451 5846571 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017471.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845711 5847492 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017472.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5845945 5847492 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017473.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5846070 5847051 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017474.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5846152 5847492 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017475.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5846523 5847492 + Snhg1 processed_transcript retained_intron MGP_C3HHeJ_T0017476.1 MGP_C3HHeJ_G0015142.1 mouse_genomes_project 19 5846548 5847492 + Snhg1 processed_transcript lincRNA MGP_C3HHeJ_T0050515.1 MGP_C3HHeJ_G0024499.1 mouse_genomes_project 19 3524537 3531712 - MGP_C3HHeJ_P0050515 Slc22a12 protein_coding protein_coding MGP_C3HHeJ_T0050516.1 MGP_C3HHeJ_G0024499.1 mouse_genomes_project 19 3524757 3530242 - Slc22a12 protein_coding processed_transcript MGP_C3HHeJ_T0050517.1 MGP_C3HHeJ_G0024499.1 mouse_genomes_project 19 3526429 3531404 - MGP_C3HHeJ_P0050517 Slc22a12 protein_coding protein_coding MGP_C3HHeJ_T0051131.1 MGP_C3HHeJ_G0024744.1 mouse_genomes_project 19 26792911 26843077 + Slc1a1 protein_coding retained_intron MGP_C3HHeJ_T0051132.1 MGP_C3HHeJ_G0024744.1 mouse_genomes_project 19 26792936 26877506 + MGP_C3HHeJ_P0051132 Slc1a1 protein_coding protein_coding MGP_C3HHeJ_T0051133.1 MGP_C3HHeJ_G0024744.1 mouse_genomes_project 19 26792997 26869534 + Slc1a1 protein_coding retained_intron MGP_C3HHeJ_T0051134.1 MGP_C3HHeJ_G0024744.1 mouse_genomes_project 19 26856745 26875423 + Slc1a1 protein_coding retained_intron MGP_C3HHeJ_T0051136.1 MGP_C3HHeJ_G0024744.1 mouse_genomes_project 19 26859513 26876184 + Slc1a1 protein_coding retained_intron MGP_C3HHeJ_T0051710.1 MGP_C3HHeJ_G0024939.1 mouse_genomes_project 19 45381164 45401998 - MGP_C3HHeJ_P0051710 Actr1a protein_coding protein_coding MGP_C3HHeJ_T0010246.1 MGP_C3HHeJ_G0008379.1 mouse_genomes_project 19 60441397 60441466 - Mir3084-2 miRNA miRNA MGP_C3HHeJ_T0017458.1 MGP_C3HHeJ_G0015141.1 mouse_genomes_project 19 3611055 3672950 - 2410152P15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0013255.1 MGP_C3HHeJ_G0011359.1 mouse_genomes_project 19 45204444 45204921 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003805.1 MGP_C3HHeJ_G0003404.1 mouse_genomes_project 19 53176197 53181824 - Gm16299 antisense antisense MGP_C3HHeJ_T0100397.1 MGP_C3HHeJ_G0038591.1 mouse_genomes_project 19 895873 896088 - Gm23927 snoRNA snoRNA MGP_C3HHeJ_T0003787.1 MGP_C3HHeJ_G0003391.1 mouse_genomes_project 19 8585482 8586225 - Gm19261 antisense antisense MGP_C3HHeJ_T0050755.1 MGP_C3HHeJ_G0024574.1 mouse_genomes_project 19 7178743 7182557 + Tmem258 protein_coding processed_transcript MGP_C3HHeJ_T0050756.1 MGP_C3HHeJ_G0024574.1 mouse_genomes_project 19 7178743 7182557 + MGP_C3HHeJ_P0050756 Tmem258 protein_coding protein_coding MGP_C3HHeJ_T0050757.1 MGP_C3HHeJ_G0024574.1 mouse_genomes_project 19 7178948 7182551 + Tmem258 protein_coding retained_intron MGP_C3HHeJ_T0050758.1 MGP_C3HHeJ_G0024574.1 mouse_genomes_project 19 7180763 7182557 + MGP_C3HHeJ_P0050758 Tmem258 protein_coding protein_coding MGP_C3HHeJ_T0051484.1 MGP_C3HHeJ_G0024870.1 mouse_genomes_project 19 40857434 40888854 + MGP_C3HHeJ_P0051484 Pi4k2a protein_coding protein_coding MGP_C3HHeJ_T0013246.1 MGP_C3HHeJ_G0011350.1 mouse_genomes_project 19 23666688 23672398 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051201.1 MGP_C3HHeJ_G0024764.1 mouse_genomes_project 19 28102301 28183458 - MGP_C3HHeJ_P0051201 Gldc protein_coding protein_coding MGP_C3HHeJ_T0007005.1 MGP_C3HHeJ_G0005746.1 mouse_genomes_project 19 34196148 34284785 - A830019P07Rik lincRNA lincRNA MGP_C3HHeJ_T0050178.1 MGP_C3HHeJ_G0024412.1 mouse_genomes_project 19 1728031 1730362 - Actn3 protein_coding processed_transcript MGP_C3HHeJ_T0050179.1 MGP_C3HHeJ_G0024412.1 mouse_genomes_project 19 1728031 1745124 - MGP_C3HHeJ_P0050179 Actn3 protein_coding protein_coding MGP_C3HHeJ_T0051741.1 MGP_C3HHeJ_G0024954.1 mouse_genomes_project 19 46162268 46203795 + MGP_C3HHeJ_P0051741 Pdcd11 protein_coding protein_coding MGP_C3HHeJ_T0051204.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 28614536 29853152 - MGP_C3HHeJ_P0051204 Prkg1 protein_coding protein_coding MGP_C3HHeJ_T0051205.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 28615532 29751553 - MGP_C3HHeJ_P0051205 Prkg1 protein_coding protein_coding MGP_C3HHeJ_T0051206.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 28615946 28621529 - Prkg1 protein_coding processed_transcript MGP_C3HHeJ_T0051207.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 28615948 28621529 - Prkg1 protein_coding processed_transcript MGP_C3HHeJ_T0051208.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 28669215 28675448 - Prkg1 protein_coding processed_transcript MGP_C3HHeJ_T0051209.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 28757318 28833213 - Prkg1 protein_coding retained_intron MGP_C3HHeJ_T0051211.1 MGP_C3HHeJ_G0024767.1 mouse_genomes_project 19 29828825 29853092 - MGP_C3HHeJ_P0051211 Prkg1 protein_coding protein_coding MGP_C3HHeJ_T0050562.1 MGP_C3HHeJ_G0024520.1 mouse_genomes_project 19 4225863 4233795 - MGP_C3HHeJ_P0050562 Otub1 protein_coding protein_coding MGP_C3HHeJ_T0050563.1 MGP_C3HHeJ_G0024520.1 mouse_genomes_project 19 4225871 4233713 - MGP_C3HHeJ_P0050563 Otub1 protein_coding protein_coding MGP_C3HHeJ_T0050564.1 MGP_C3HHeJ_G0024520.1 mouse_genomes_project 19 4227204 4228129 - Otub1 protein_coding retained_intron MGP_C3HHeJ_T0050565.1 MGP_C3HHeJ_G0024520.1 mouse_genomes_project 19 4227375 4233254 - MGP_C3HHeJ_P0050565 Otub1 protein_coding protein_coding MGP_C3HHeJ_T0050566.1 MGP_C3HHeJ_G0024520.1 mouse_genomes_project 19 4227405 4231898 - Otub1 protein_coding retained_intron MGP_C3HHeJ_T0010243.1 MGP_C3HHeJ_G0008376.1 mouse_genomes_project 19 57610840 57610910 + Mir5623 miRNA miRNA MGP_C3HHeJ_T0098386.1 MGP_C3HHeJ_G0036592.1 mouse_genomes_project 19 55296573 55301883 + Ppnr sense_intronic sense_intronic MGP_C3HHeJ_T0010219.1 MGP_C3HHeJ_G0008352.1 mouse_genomes_project 19 27112184 27112281 + Mir101b miRNA miRNA MGP_C3HHeJ_T0051719.1 MGP_C3HHeJ_G0024943.1 mouse_genomes_project 19 45594537 45632499 + MGP_C3HHeJ_P0051719 Sfxn2 protein_coding protein_coding MGP_C3HHeJ_T0050140.1 MGP_C3HHeJ_G0024397.1 mouse_genomes_project 19 1266535 1288027 - MGP_C3HHeJ_P0050140 Rhod protein_coding protein_coding MGP_C3HHeJ_T0050141.1 MGP_C3HHeJ_G0024397.1 mouse_genomes_project 19 1266743 1288016 - MGP_C3HHeJ_P0050141 Rhod protein_coding protein_coding MGP_C3HHeJ_T0050142.1 MGP_C3HHeJ_G0024397.1 mouse_genomes_project 19 1267303 1267632 - Rhod protein_coding processed_transcript MGP_C3HHeJ_T0098094.1 MGP_C3HHeJ_G0036306.1 mouse_genomes_project 19 33951783 33951914 - Gm22853 rRNA rRNA MGP_C3HHeJ_T0051325.1 MGP_C3HHeJ_G0024812.1 mouse_genomes_project 19 35705251 35799670 - MGP_C3HHeJ_P0051325 Ide protein_coding protein_coding MGP_C3HHeJ_T0051326.1 MGP_C3HHeJ_G0024812.1 mouse_genomes_project 19 35706943 35740353 - Ide protein_coding processed_transcript MGP_C3HHeJ_T0051327.1 MGP_C3HHeJ_G0024812.1 mouse_genomes_project 19 35717096 35727394 - Ide protein_coding retained_intron MGP_C3HHeJ_T0051328.1 MGP_C3HHeJ_G0024812.1 mouse_genomes_project 19 35736307 35746534 - Ide protein_coding processed_transcript MGP_C3HHeJ_T0051329.1 MGP_C3HHeJ_G0024812.1 mouse_genomes_project 19 35736611 35772228 - Ide protein_coding retained_intron MGP_C3HHeJ_T0049977.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 543753 585330 + MGP_C3HHeJ_P0049977 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049978.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 543753 594787 + MGP_C3HHeJ_P0049978 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049979.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 543753 592876 + MGP_C3HHeJ_P0049979 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049980.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 543753 594788 + MGP_C3HHeJ_P0049980 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049981.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 543753 592876 + MGP_C3HHeJ_P0049981 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049982.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 543855 582825 + MGP_C3HHeJ_P0049982 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049983.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544365 585336 + MGP_C3HHeJ_P0049983 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049984.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544450 581558 + MGP_C3HHeJ_P0049984 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049985.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544466 559012 + Suv420h1 protein_coding retained_intron MGP_C3HHeJ_T0049986.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544481 581003 + MGP_C3HHeJ_P0049986 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049987.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544498 593173 + MGP_C3HHeJ_P0049987 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049988.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544501 569674 + MGP_C3HHeJ_P0049988 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049989.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544550 585308 + MGP_C3HHeJ_P0049989 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049990.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544565 569692 + MGP_C3HHeJ_P0049990 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049991.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 544879 573167 + MGP_C3HHeJ_P0049991 Suv420h1 protein_coding protein_coding MGP_C3HHeJ_T0049992.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 568226 576070 + Suv420h1 protein_coding retained_intron MGP_C3HHeJ_T0049993.1 MGP_C3HHeJ_G0024363.1 mouse_genomes_project 19 580894 583903 + Suv420h1 protein_coding retained_intron MGP_C3HHeJ_T0050128.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1152175 1238492 - MGP_C3HHeJ_P0050128 Kdm2a protein_coding protein_coding MGP_C3HHeJ_T0050129.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1153925 1237353 - MGP_C3HHeJ_P0050129 Kdm2a protein_coding protein_coding MGP_C3HHeJ_T0050130.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1157275 1160384 - MGP_C3HHeJ_P0050130 Kdm2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050131.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1158198 1160639 - Kdm2a protein_coding retained_intron MGP_C3HHeJ_T0050132.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1162741 1172209 - MGP_C3HHeJ_P0050132 Kdm2a protein_coding protein_coding MGP_C3HHeJ_T0050133.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1167025 1172127 - MGP_C3HHeJ_P0050133 Kdm2a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050134.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1181093 1237356 - MGP_C3HHeJ_P0050134 Kdm2a protein_coding protein_coding MGP_C3HHeJ_T0050135.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1187687 1237352 - Kdm2a protein_coding retained_intron MGP_C3HHeJ_T0050136.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1189677 1203376 - MGP_C3HHeJ_P0050136 Kdm2a protein_coding protein_coding MGP_C3HHeJ_T0050137.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1190091 1237344 - Kdm2a protein_coding retained_intron MGP_C3HHeJ_T0050138.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1229222 1237353 - MGP_C3HHeJ_P0050138 Kdm2a protein_coding protein_coding MGP_C3HHeJ_T0050139.1 MGP_C3HHeJ_G0024396.1 mouse_genomes_project 19 1232738 1237371 - Kdm2a protein_coding retained_intron MGP_C3HHeJ_T0050827.1 MGP_C3HHeJ_G0024600.1 mouse_genomes_project 19 7988046 8002994 - MGP_C3HHeJ_P0050827 Ms4a15 protein_coding protein_coding MGP_C3HHeJ_T0050828.1 MGP_C3HHeJ_G0024600.1 mouse_genomes_project 19 7992914 8002925 - MGP_C3HHeJ_P0050828 Ms4a15 protein_coding protein_coding MGP_C3HHeJ_T0050829.1 MGP_C3HHeJ_G0024600.1 mouse_genomes_project 19 7993000 8002974 - MGP_C3HHeJ_P0050829 Ms4a15 protein_coding protein_coding MGP_C3HHeJ_T0051086.1 MGP_C3HHeJ_G0024735.1 mouse_genomes_project 19 23467492 23480853 + MGP_C3HHeJ_P0051086 Dmrt3 protein_coding protein_coding MGP_C3HHeJ_T0051032.1 MGP_C3HHeJ_G0024710.1 mouse_genomes_project 19 18898923 18906670 + MGP_C3HHeJ_P0051032 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051033.1 MGP_C3HHeJ_G0024710.1 mouse_genomes_project 19 18899482 18903275 + MGP_C3HHeJ_P0051033 protein_coding protein_coding MGP_C3HHeJ_T0051034.1 MGP_C3HHeJ_G0024710.1 mouse_genomes_project 19 18902216 18908426 + protein_coding retained_intron MGP_C3HHeJ_T0051035.1 MGP_C3HHeJ_G0024710.1 mouse_genomes_project 19 18902276 18908610 + protein_coding retained_intron MGP_C3HHeJ_T0051036.1 MGP_C3HHeJ_G0024710.1 mouse_genomes_project 19 18902671 18906808 + MGP_C3HHeJ_P0051036 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050716.1 MGP_C3HHeJ_G0024559.1 mouse_genomes_project 19 6081034 6092131 + MGP_C3HHeJ_P0050716 Mta2 protein_coding protein_coding MGP_C3HHeJ_T0050717.1 MGP_C3HHeJ_G0024559.1 mouse_genomes_project 19 6081652 6085038 + Mta2 protein_coding processed_transcript MGP_C3HHeJ_T0050718.1 MGP_C3HHeJ_G0024559.1 mouse_genomes_project 19 6081665 6085912 + Mta2 protein_coding processed_transcript MGP_C3HHeJ_T0050719.1 MGP_C3HHeJ_G0024559.1 mouse_genomes_project 19 6083200 6086313 + Mta2 protein_coding retained_intron MGP_C3HHeJ_T0050720.1 MGP_C3HHeJ_G0024559.1 mouse_genomes_project 19 6084259 6085933 + Mta2 protein_coding processed_transcript MGP_C3HHeJ_T0050721.1 MGP_C3HHeJ_G0024559.1 mouse_genomes_project 19 6085584 6086875 + Mta2 protein_coding retained_intron MGP_C3HHeJ_T0051580.1 MGP_C3HHeJ_G0024902.1 mouse_genomes_project 19 43386163 43408323 + MGP_C3HHeJ_P0051580 Wnt8b protein_coding protein_coding MGP_C3HHeJ_T0010241.1 MGP_C3HHeJ_G0008374.1 mouse_genomes_project 19 52285199 52285300 - Mir6407 miRNA miRNA MGP_C3HHeJ_T0099168.1 MGP_C3HHeJ_G0037362.1 mouse_genomes_project 19 52451240 52451347 - Gm24724 snRNA snRNA MGP_C3HHeJ_T0051384.1 MGP_C3HHeJ_G0024839.1 mouse_genomes_project 19 38740863 38777501 + MGP_C3HHeJ_P0051384 Cyp2c50 protein_coding protein_coding MGP_C3HHeJ_T0051882.1 MGP_C3HHeJ_G0024997.1 mouse_genomes_project 19 56039583 56092383 + MGP_C3HHeJ_P0051882 Nhlrc2 protein_coding protein_coding MGP_C3HHeJ_T0051585.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43442668 43449523 - MGP_C3HHeJ_P0051585 Ndufb8 protein_coding protein_coding MGP_C3HHeJ_T0051586.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43444336 43449537 - MGP_C3HHeJ_P0051586 Ndufb8 protein_coding protein_coding MGP_C3HHeJ_T0051587.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43444349 43449516 - MGP_C3HHeJ_P0051587 Ndufb8 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051588.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43444351 43446977 - Ndufb8 protein_coding retained_intron MGP_C3HHeJ_T0051589.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43446718 43449083 - MGP_C3HHeJ_P0051589 Ndufb8 protein_coding protein_coding MGP_C3HHeJ_T0051590.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43446936 43449501 - MGP_C3HHeJ_P0051590 Ndufb8 protein_coding protein_coding MGP_C3HHeJ_T0051591.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43447371 43449502 - Ndufb8 protein_coding retained_intron MGP_C3HHeJ_T0051592.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43448797 43449523 - Ndufb8 protein_coding retained_intron MGP_C3HHeJ_T0051593.1 MGP_C3HHeJ_G0024905.1 mouse_genomes_project 19 43448811 43449520 - Ndufb8 protein_coding retained_intron MGP_C3HHeJ_T0051005.1 MGP_C3HHeJ_G0024700.1 mouse_genomes_project 19 16085901 16137572 - MGP_C3HHeJ_P0051005 Ostf1 protein_coding protein_coding MGP_C3HHeJ_T0051006.1 MGP_C3HHeJ_G0024700.1 mouse_genomes_project 19 16087604 16137523 - Ostf1 protein_coding retained_intron MGP_C3HHeJ_T0051007.1 MGP_C3HHeJ_G0024700.1 mouse_genomes_project 19 16100228 16137501 - Ostf1 protein_coding retained_intron MGP_C3HHeJ_T0051793.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52219693 52313324 - MGP_C3HHeJ_P0051793 Xpnpep1 protein_coding protein_coding MGP_C3HHeJ_T0051794.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52222698 52313412 - MGP_C3HHeJ_P0051794 Xpnpep1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051795.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52265660 52295054 - Xpnpep1 protein_coding processed_transcript MGP_C3HHeJ_T0051796.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52265661 52315841 - MGP_C3HHeJ_P0051796 Xpnpep1 protein_coding protein_coding MGP_C3HHeJ_T0051797.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52269882 52271152 - Xpnpep1 protein_coding retained_intron MGP_C3HHeJ_T0051798.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52282446 52289884 - Xpnpep1 protein_coding processed_transcript MGP_C3HHeJ_T0051799.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52284610 52294889 - Xpnpep1 protein_coding processed_transcript MGP_C3HHeJ_T0051800.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52286725 52288148 - Xpnpep1 protein_coding retained_intron MGP_C3HHeJ_T0051801.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52286754 52313331 - MGP_C3HHeJ_P0051801 Xpnpep1 protein_coding protein_coding MGP_C3HHeJ_T0051802.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52292183 52306902 - Xpnpep1 protein_coding processed_transcript MGP_C3HHeJ_T0051803.1 MGP_C3HHeJ_G0024973.1 mouse_genomes_project 19 52307267 52313335 - Xpnpep1 protein_coding processed_transcript MGP_C3HHeJ_T0051788.1 MGP_C3HHeJ_G0024971.1 mouse_genomes_project 19 49315430 49871238 - MGP_C3HHeJ_P0051788 protein_coding protein_coding MGP_C3HHeJ_T0051789.1 MGP_C3HHeJ_G0024971.1 mouse_genomes_project 19 49319789 49871238 - MGP_C3HHeJ_P0051789 protein_coding protein_coding MGP_C3HHeJ_T0051790.1 MGP_C3HHeJ_G0024971.1 mouse_genomes_project 19 49323127 49426042 - MGP_C3HHeJ_P0051790 protein_coding protein_coding MGP_C3HHeJ_T0051791.1 MGP_C3HHeJ_G0024971.1 mouse_genomes_project 19 49324821 49871077 - MGP_C3HHeJ_P0051791 protein_coding protein_coding MGP_C3HHeJ_T0100396.1 MGP_C3HHeJ_G0038590.1 mouse_genomes_project 19 895872 896088 - Gm23927 snoRNA snoRNA MGP_C3HHeJ_T0051816.1 MGP_C3HHeJ_G0024980.1 mouse_genomes_project 19 53014006 53223985 + MGP_C3HHeJ_P0051816 Rbm20 protein_coding protein_coding MGP_C3HHeJ_T0051817.1 MGP_C3HHeJ_G0024980.1 mouse_genomes_project 19 53014006 53200163 + MGP_C3HHeJ_P0051817 Rbm20 protein_coding protein_coding MGP_C3HHeJ_T0051818.1 MGP_C3HHeJ_G0024980.1 mouse_genomes_project 19 53149722 53170407 + Rbm20 protein_coding processed_transcript MGP_C3HHeJ_T0051819.1 MGP_C3HHeJ_G0024980.1 mouse_genomes_project 19 53199609 53223985 + MGP_C3HHeJ_P0051819 Rbm20 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0017433.1 MGP_C3HHeJ_G0015135.1 mouse_genomes_project 19 575143 634374 - Gm16066 processed_transcript processed_transcript MGP_C3HHeJ_T0050749.1 MGP_C3HHeJ_G0024571.1 mouse_genomes_project 19 7030174 7069902 - MGP_C3HHeJ_P0050749 Fads2 protein_coding protein_coding MGP_C3HHeJ_T0050830.1 MGP_C3HHeJ_G0024601.1 mouse_genomes_project 19 8006768 8029293 - MGP_C3HHeJ_P0050830 Ms4a18 protein_coding protein_coding MGP_C3HHeJ_T0099165.1 MGP_C3HHeJ_G0037359.1 mouse_genomes_project 19 46130355 46130462 + Gm23140 snRNA snRNA MGP_C3HHeJ_T0051423.1 MGP_C3HHeJ_G0024846.1 mouse_genomes_project 19 39549400 39567446 + MGP_C3HHeJ_P0051423 Ccnj protein_coding protein_coding MGP_C3HHeJ_T0051424.1 MGP_C3HHeJ_G0024846.1 mouse_genomes_project 19 39549400 39567446 + MGP_C3HHeJ_P0051424 Ccnj protein_coding protein_coding MGP_C3HHeJ_T0051425.1 MGP_C3HHeJ_G0024846.1 mouse_genomes_project 19 39549429 39566883 + MGP_C3HHeJ_P0051425 Ccnj protein_coding protein_coding MGP_C3HHeJ_T0050991.1 MGP_C3HHeJ_G0024694.1 mouse_genomes_project 19 14038227 14212824 - MGP_C3HHeJ_P0050991 Vps13a protein_coding protein_coding MGP_C3HHeJ_T0050992.1 MGP_C3HHeJ_G0024694.1 mouse_genomes_project 19 14056190 14212771 - MGP_C3HHeJ_P0050992 Vps13a protein_coding unknown_likely_coding MGP_C3HHeJ_T0050896.1 MGP_C3HHeJ_G0024625.1 mouse_genomes_project 19 8872103 8876633 + MGP_C3HHeJ_P0050896 Mrpl16 protein_coding protein_coding MGP_C3HHeJ_T0049994.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 633727 678169 + MGP_C3HHeJ_P0049994 Chka protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049995.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 633751 678173 + MGP_C3HHeJ_P0049995 Chka protein_coding protein_coding MGP_C3HHeJ_T0049996.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 633764 655733 + Chka protein_coding retained_intron MGP_C3HHeJ_T0049997.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 633764 678171 + Chka protein_coding retained_intron MGP_C3HHeJ_T0049998.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 633786 651494 + Chka protein_coding retained_intron MGP_C3HHeJ_T0049999.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 633786 662434 + Chka protein_coding retained_intron MGP_C3HHeJ_T0050000.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 634030 678168 + MGP_C3HHeJ_P0050000 Chka protein_coding protein_coding MGP_C3HHeJ_T0050001.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 634055 669668 + MGP_C3HHeJ_P0050001 Chka protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050002.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 634317 671254 + MGP_C3HHeJ_P0050002 Chka protein_coding protein_coding MGP_C3HHeJ_T0050003.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 658483 673738 + MGP_C3HHeJ_P0050003 Chka protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050004.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 659184 668389 + Chka protein_coding processed_transcript MGP_C3HHeJ_T0050005.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 659198 668342 + Chka protein_coding retained_intron MGP_C3HHeJ_T0050006.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 659224 670220 + Chka protein_coding processed_transcript MGP_C3HHeJ_T0050007.1 MGP_C3HHeJ_G0024364.1 mouse_genomes_project 19 675534 677461 + Chka protein_coding retained_intron MGP_C3HHeJ_T0051500.1 MGP_C3HHeJ_G0024876.1 mouse_genomes_project 19 41059951 41204621 - MGP_C3HHeJ_P0051500 Crtac1 protein_coding protein_coding MGP_C3HHeJ_T0010214.1 MGP_C3HHeJ_G0008347.1 mouse_genomes_project 19 10909469 10909578 - Gm22323 miRNA miRNA MGP_C3HHeJ_T0100423.1 MGP_C3HHeJ_G0038617.1 mouse_genomes_project 19 46810591 46810707 + Gm26085 snoRNA snoRNA MGP_C3HHeJ_T0007030.1 MGP_C3HHeJ_G0005764.1 mouse_genomes_project 19 56842228 56880456 - B230217O12Rik lincRNA lincRNA MGP_C3HHeJ_T0050058.1 MGP_C3HHeJ_G0024379.1 mouse_genomes_project 19 917766 919385 + Cdk2ap2 protein_coding retained_intron MGP_C3HHeJ_T0050059.1 MGP_C3HHeJ_G0024379.1 mouse_genomes_project 19 917766 918831 + MGP_C3HHeJ_P0050059 Cdk2ap2 protein_coding protein_coding MGP_C3HHeJ_T0050060.1 MGP_C3HHeJ_G0024379.1 mouse_genomes_project 19 917767 919376 + MGP_C3HHeJ_P0050060 Cdk2ap2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050061.1 MGP_C3HHeJ_G0024379.1 mouse_genomes_project 19 917791 919383 + MGP_C3HHeJ_P0050061 Cdk2ap2 protein_coding protein_coding MGP_C3HHeJ_T0051655.1 MGP_C3HHeJ_G0024926.1 mouse_genomes_project 19 44793009 44980886 - MGP_C3HHeJ_P0051655 9130011E15Rik protein_coding protein_coding MGP_C3HHeJ_T0050973.1 MGP_C3HHeJ_G0024685.1 mouse_genomes_project 19 11123808 11124860 - MGP_C3HHeJ_P0050973 Olfr1499 protein_coding protein_coding MGP_C3HHeJ_T0050089.1 MGP_C3HHeJ_G0024385.1 mouse_genomes_project 19 976499 978645 + MGP_C3HHeJ_P0050089 Ptprcap protein_coding protein_coding MGP_C3HHeJ_T0051730.1 MGP_C3HHeJ_G0024947.1 mouse_genomes_project 19 45750514 45788768 + MGP_C3HHeJ_P0051730 As3mt protein_coding protein_coding MGP_C3HHeJ_T0003802.1 MGP_C3HHeJ_G0003401.1 mouse_genomes_project 19 44720878 44723591 + Gm15491 antisense antisense MGP_C3HHeJ_T0050321.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2843780 2850097 - Dpf2 protein_coding retained_intron MGP_C3HHeJ_T0050322.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2843792 2859349 - MGP_C3HHeJ_P0050322 Dpf2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050323.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2845890 2849206 - Dpf2 protein_coding retained_intron MGP_C3HHeJ_T0050324.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2850911 2859354 - Dpf2 protein_coding retained_intron MGP_C3HHeJ_T0050325.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2851890 2859346 - Dpf2 protein_coding retained_intron MGP_C3HHeJ_T0050326.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2852301 2859587 - Dpf2 protein_coding processed_transcript MGP_C3HHeJ_T0050327.1 MGP_C3HHeJ_G0024466.1 mouse_genomes_project 19 2858402 2859384 - Dpf2 protein_coding processed_transcript MGP_C3HHeJ_T0051974.1 MGP_C3HHeJ_G0025028.1 mouse_genomes_project 19 60512766 60538993 - MGP_C3HHeJ_P0051974 Sfxn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051975.1 MGP_C3HHeJ_G0025028.1 mouse_genomes_project 19 60514190 60539045 - MGP_C3HHeJ_P0051975 Sfxn4 protein_coding protein_coding MGP_C3HHeJ_T0051976.1 MGP_C3HHeJ_G0025028.1 mouse_genomes_project 19 60514200 60538990 - MGP_C3HHeJ_P0051976 Sfxn4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050560.1 MGP_C3HHeJ_G0024518.1 mouse_genomes_project 19 4081261 4225723 + MGP_C3HHeJ_P0050560 Macrod1 protein_coding protein_coding MGP_C3HHeJ_T0051153.1 MGP_C3HHeJ_G0024752.1 mouse_genomes_project 19 27316888 27320271 - Rln1 protein_coding retained_intron MGP_C3HHeJ_T0051154.1 MGP_C3HHeJ_G0024752.1 mouse_genomes_project 19 27317425 27320389 - MGP_C3HHeJ_P0051154 Rln1 protein_coding protein_coding MGP_C3HHeJ_T0050222.1 MGP_C3HHeJ_G0024431.1 mouse_genomes_project 19 2195505 2205855 + MGP_C3HHeJ_P0050222 Gal3st3 protein_coding protein_coding MGP_C3HHeJ_T0051016.1 MGP_C3HHeJ_G0024704.1 mouse_genomes_project 19 16264027 16416624 + MGP_C3HHeJ_P0051016 Trpm6 protein_coding protein_coding MGP_C3HHeJ_T0051017.1 MGP_C3HHeJ_G0024704.1 mouse_genomes_project 19 16264075 16416251 + MGP_C3HHeJ_P0051017 Trpm6 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049972.1 MGP_C3HHeJ_G0024361.1 mouse_genomes_project 19 347797 454986 - MGP_C3HHeJ_P0049972 Lrp5 protein_coding protein_coding MGP_C3HHeJ_T0049973.1 MGP_C3HHeJ_G0024361.1 mouse_genomes_project 19 347800 454991 - MGP_C3HHeJ_P0049973 Lrp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049974.1 MGP_C3HHeJ_G0024361.1 mouse_genomes_project 19 347805 378383 - MGP_C3HHeJ_P0049974 Lrp5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049975.1 MGP_C3HHeJ_G0024361.1 mouse_genomes_project 19 384241 454994 - MGP_C3HHeJ_P0049975 Lrp5 protein_coding protein_coding MGP_C3HHeJ_T0051823.1 MGP_C3HHeJ_G0024982.1 mouse_genomes_project 19 53287794 53303513 - MGP_C3HHeJ_P0051823 Bbip1 protein_coding protein_coding MGP_C3HHeJ_T0099164.1 MGP_C3HHeJ_G0037358.1 mouse_genomes_project 19 43850246 43850353 + Gm25482 snRNA snRNA MGP_C3HHeJ_T0051066.1 MGP_C3HHeJ_G0024725.1 mouse_genomes_project 19 21826505 21875917 - MGP_C3HHeJ_P0051066 Tjp2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051698.1 MGP_C3HHeJ_G0024934.1 mouse_genomes_project 19 45306183 45313399 + MGP_C3HHeJ_P0051698 Nfkb2 protein_coding protein_coding MGP_C3HHeJ_T0051699.1 MGP_C3HHeJ_G0024934.1 mouse_genomes_project 19 45307141 45313399 + MGP_C3HHeJ_P0051699 Nfkb2 protein_coding protein_coding MGP_C3HHeJ_T0050916.1 MGP_C3HHeJ_G0024643.1 mouse_genomes_project 19 9620221 9624427 + MGP_C3HHeJ_P0050916 Pfpl protein_coding protein_coding MGP_C3HHeJ_T0050221.1 MGP_C3HHeJ_G0024430.1 mouse_genomes_project 19 2170401 2192632 - MGP_C3HHeJ_P0050221 Sf3b2 protein_coding protein_coding MGP_C3HHeJ_T0013227.1 MGP_C3HHeJ_G0011331.1 mouse_genomes_project 19 4722892 4723399 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050732.1 MGP_C3HHeJ_G0024564.1 mouse_genomes_project 19 6265021 6294478 - MGP_C3HHeJ_P0050732 Asrgl1 protein_coding protein_coding MGP_C3HHeJ_T0050733.1 MGP_C3HHeJ_G0024564.1 mouse_genomes_project 19 6287493 6294373 - Asrgl1 protein_coding processed_transcript MGP_C3HHeJ_T0050272.1 MGP_C3HHeJ_G0024449.1 mouse_genomes_project 19 2463547 2474986 - MGP_C3HHeJ_P0050272 Ovol1 protein_coding protein_coding MGP_C3HHeJ_T0099148.1 MGP_C3HHeJ_G0037342.1 mouse_genomes_project 19 4279133 4279237 + Gm22113 snRNA snRNA MGP_C3HHeJ_T0050540.1 MGP_C3HHeJ_G0024508.1 mouse_genomes_project 19 3948749 3958775 + MGP_C3HHeJ_P0050540 Bad protein_coding protein_coding MGP_C3HHeJ_T0050541.1 MGP_C3HHeJ_G0024508.1 mouse_genomes_project 19 3949211 3958769 + MGP_C3HHeJ_P0050541 Bad protein_coding protein_coding MGP_C3HHeJ_T0050542.1 MGP_C3HHeJ_G0024508.1 mouse_genomes_project 19 3949389 3958770 + MGP_C3HHeJ_P0050542 Bad protein_coding protein_coding MGP_C3HHeJ_T0050543.1 MGP_C3HHeJ_G0024508.1 mouse_genomes_project 19 3949767 3958129 + MGP_C3HHeJ_P0050543 Bad protein_coding protein_coding MGP_C3HHeJ_T0050544.1 MGP_C3HHeJ_G0024508.1 mouse_genomes_project 19 3957643 3958751 + MGP_C3HHeJ_P0050544 Bad protein_coding protein_coding MGP_C3HHeJ_T0011386.1 MGP_C3HHeJ_G0009519.1 mouse_genomes_project 19 32587330 32587489 + Gm27818 misc_RNA misc_RNA MGP_C3HHeJ_T0051703.1 MGP_C3HHeJ_G0024936.1 mouse_genomes_project 19 45329492 45331762 + MGP_C3HHeJ_P0051703 Fbxl15 protein_coding protein_coding MGP_C3HHeJ_T0051704.1 MGP_C3HHeJ_G0024936.1 mouse_genomes_project 19 45329495 45331761 + MGP_C3HHeJ_P0051704 Fbxl15 protein_coding protein_coding MGP_C3HHeJ_T0050963.1 MGP_C3HHeJ_G0024675.1 mouse_genomes_project 19 10803804 10804978 + MGP_C3HHeJ_P0050963 Olfr1480 protein_coding protein_coding MGP_C3HHeJ_T0010223.1 MGP_C3HHeJ_G0008356.1 mouse_genomes_project 19 33073335 33073439 + Gm27476 miRNA miRNA MGP_C3HHeJ_T0051362.1 MGP_C3HHeJ_G0024827.1 mouse_genomes_project 19 37345446 37378744 - MGP_C3HHeJ_P0051362 Noc3l protein_coding protein_coding MGP_C3HHeJ_T0050947.1 MGP_C3HHeJ_G0024659.1 mouse_genomes_project 19 10129155 10130100 - MGP_C3HHeJ_P0050947 Olfr1448 protein_coding protein_coding MGP_C3HHeJ_T0099151.1 MGP_C3HHeJ_G0037345.1 mouse_genomes_project 19 12086409 12086532 - Gm26026 snRNA snRNA MGP_C3HHeJ_T0051965.1 MGP_C3HHeJ_G0025025.1 mouse_genomes_project 19 60422200 60426131 + MGP_C3HHeJ_P0051965 Nanos1 protein_coding protein_coding MGP_C3HHeJ_T0051656.1 MGP_C3HHeJ_G0024927.1 mouse_genomes_project 19 44986721 44989417 + MGP_C3HHeJ_P0051656 Hps6 protein_coding protein_coding MGP_C3HHeJ_T0013223.1 MGP_C3HHeJ_G0011327.1 mouse_genomes_project 19 292 1591 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050626.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5828813 5844148 - MGP_C3HHeJ_P0050626 Slc3a2 protein_coding protein_coding MGP_C3HHeJ_T0050627.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5830555 5834603 - MGP_C3HHeJ_P0050627 Slc3a2 protein_coding protein_coding MGP_C3HHeJ_T0050628.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5830981 5834604 - MGP_C3HHeJ_P0050628 Slc3a2 protein_coding protein_coding MGP_C3HHeJ_T0050629.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5831013 5835681 - MGP_C3HHeJ_P0050629 Slc3a2 protein_coding protein_coding MGP_C3HHeJ_T0050630.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5834403 5844251 - Slc3a2 protein_coding retained_intron MGP_C3HHeJ_T0050631.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5834656 5835344 - MGP_C3HHeJ_P0050631 Slc3a2 protein_coding protein_coding MGP_C3HHeJ_T0050632.1 MGP_C3HHeJ_G0024537.1 mouse_genomes_project 19 5834667 5835431 - MGP_C3HHeJ_P0050632 Slc3a2 protein_coding protein_coding MGP_C3HHeJ_T0050619.1 MGP_C3HHeJ_G0024533.1 mouse_genomes_project 19 5267532 5478315 - protein_coding processed_transcript MGP_C3HHeJ_T0051049.1 MGP_C3HHeJ_G0024715.1 mouse_genomes_project 19 19421157 19502138 + MGP_C3HHeJ_P0051049 Tmem2 protein_coding protein_coding MGP_C3HHeJ_T0051050.1 MGP_C3HHeJ_G0024715.1 mouse_genomes_project 19 19421157 19502137 + MGP_C3HHeJ_P0051050 Tmem2 protein_coding protein_coding MGP_C3HHeJ_T0051181.1 MGP_C3HHeJ_G0024759.1 mouse_genomes_project 19 27707642 27803820 - MGP_C3HHeJ_P0051181 9930021J03Rik protein_coding protein_coding MGP_C3HHeJ_T0051182.1 MGP_C3HHeJ_G0024759.1 mouse_genomes_project 19 27708553 27747177 - MGP_C3HHeJ_P0051182 9930021J03Rik protein_coding protein_coding MGP_C3HHeJ_T0051183.1 MGP_C3HHeJ_G0024759.1 mouse_genomes_project 19 27708815 27803962 - MGP_C3HHeJ_P0051183 9930021J03Rik protein_coding protein_coding MGP_C3HHeJ_T0051184.1 MGP_C3HHeJ_G0024759.1 mouse_genomes_project 19 27713962 27747239 - MGP_C3HHeJ_P0051184 9930021J03Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050970.1 MGP_C3HHeJ_G0024682.1 mouse_genomes_project 19 11076474 11077561 + MGP_C3HHeJ_P0050970 Olfr1495 protein_coding protein_coding MGP_C3HHeJ_T0006985.1 MGP_C3HHeJ_G0005733.1 mouse_genomes_project 19 8508425 8510225 + Gm37387 lincRNA lincRNA MGP_C3HHeJ_T0051833.1 MGP_C3HHeJ_G0024987.1 mouse_genomes_project 19 54623952 54668988 - MGP_C3HHeJ_P0051833 Gucy2g protein_coding protein_coding MGP_C3HHeJ_T0050782.1 MGP_C3HHeJ_G0024583.1 mouse_genomes_project 19 7554416 7561287 - MGP_C3HHeJ_P0050782 Tmem138 protein_coding protein_coding MGP_C3HHeJ_T0050548.1 MGP_C3HHeJ_G0024511.1 mouse_genomes_project 19 3987234 3989955 - MGP_C3HHeJ_P0050548 Fkbp2 protein_coding protein_coding MGP_C3HHeJ_T0050549.1 MGP_C3HHeJ_G0024511.1 mouse_genomes_project 19 3987234 3989934 - MGP_C3HHeJ_P0050549 Fkbp2 protein_coding protein_coding MGP_C3HHeJ_T0050101.1 MGP_C3HHeJ_G0024388.1 mouse_genomes_project 19 1007243 1013938 - MGP_C3HHeJ_P0050101 Tbc1d10c protein_coding protein_coding MGP_C3HHeJ_T0050915.1 MGP_C3HHeJ_G0024642.1 mouse_genomes_project 19 9614581 9615669 + MGP_C3HHeJ_P0050915 Olfr1441 protein_coding protein_coding MGP_C3HHeJ_T0051254.1 MGP_C3HHeJ_G0024787.1 mouse_genomes_project 19 32482997 32531635 + MGP_C3HHeJ_P0051254 Stambpl1 protein_coding protein_coding MGP_C3HHeJ_T0051255.1 MGP_C3HHeJ_G0024787.1 mouse_genomes_project 19 32483590 32522744 + MGP_C3HHeJ_P0051255 Stambpl1 protein_coding protein_coding MGP_C3HHeJ_T0051256.1 MGP_C3HHeJ_G0024787.1 mouse_genomes_project 19 32508736 32527164 + Stambpl1 protein_coding retained_intron MGP_C3HHeJ_T0051257.1 MGP_C3HHeJ_G0024787.1 mouse_genomes_project 19 32508926 32531633 + MGP_C3HHeJ_P0051257 Stambpl1 protein_coding protein_coding MGP_C3HHeJ_T0051258.1 MGP_C3HHeJ_G0024787.1 mouse_genomes_project 19 32524007 32525601 + Stambpl1 protein_coding processed_transcript MGP_C3HHeJ_T0050269.1 MGP_C3HHeJ_G0024446.1 mouse_genomes_project 19 2393252 2396797 + MGP_C3HHeJ_P0050269 Cfl1 protein_coding protein_coding MGP_C3HHeJ_T0050967.1 MGP_C3HHeJ_G0024679.1 mouse_genomes_project 19 10960801 10961752 + MGP_C3HHeJ_P0050967 Olfr1490 protein_coding protein_coding MGP_C3HHeJ_T0050765.1 MGP_C3HHeJ_G0024576.1 mouse_genomes_project 19 7220000 7250114 - MGP_C3HHeJ_P0050765 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050766.1 MGP_C3HHeJ_G0024576.1 mouse_genomes_project 19 7220008 7282123 - MGP_C3HHeJ_P0050766 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050767.1 MGP_C3HHeJ_G0024576.1 mouse_genomes_project 19 7228070 7231548 - protein_coding processed_transcript MGP_C3HHeJ_T0006998.1 MGP_C3HHeJ_G0005742.1 mouse_genomes_project 19 27475394 27511529 - A930007I19Rik lincRNA lincRNA MGP_C3HHeJ_T0006999.1 MGP_C3HHeJ_G0005742.1 mouse_genomes_project 19 27475973 27512694 - A930007I19Rik lincRNA lincRNA MGP_C3HHeJ_T0007000.1 MGP_C3HHeJ_G0005742.1 mouse_genomes_project 19 27492645 27511524 - A930007I19Rik lincRNA lincRNA MGP_C3HHeJ_T0051063.1 MGP_C3HHeJ_G0024722.1 mouse_genomes_project 19 21446710 21448420 + MGP_C3HHeJ_P0051063 Gm9938 protein_coding protein_coding MGP_C3HHeJ_T0100408.1 MGP_C3HHeJ_G0038602.1 mouse_genomes_project 19 9043431 9043565 - Gm22272 snoRNA snoRNA MGP_C3HHeJ_T0050062.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 920363 934325 + MGP_C3HHeJ_P0050062 Pitpnm1 protein_coding protein_coding MGP_C3HHeJ_T0050063.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 920411 934325 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0050064.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 920634 925289 + MGP_C3HHeJ_P0050064 Pitpnm1 protein_coding protein_coding MGP_C3HHeJ_T0050065.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 920987 934325 + MGP_C3HHeJ_P0050065 Pitpnm1 protein_coding protein_coding MGP_C3HHeJ_T0050066.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 928563 930267 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0050067.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 929111 932577 + Pitpnm1 protein_coding processed_transcript MGP_C3HHeJ_T0050068.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 930007 931094 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0050069.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 931159 932384 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0050070.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 931520 932731 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0050071.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 932288 933975 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0050072.1 MGP_C3HHeJ_G0024380.1 mouse_genomes_project 19 932679 934325 + Pitpnm1 protein_coding retained_intron MGP_C3HHeJ_T0100415.1 MGP_C3HHeJ_G0038609.1 mouse_genomes_project 19 22971121 22971253 - Gm24252 snoRNA snoRNA MGP_C3HHeJ_T0050030.1 MGP_C3HHeJ_G0024371.1 mouse_genomes_project 19 799418 807795 + MGP_C3HHeJ_P0050030 Tbx10 protein_coding protein_coding MGP_C3HHeJ_T0050172.1 MGP_C3HHeJ_G0024408.1 mouse_genomes_project 19 1665894 1676953 - MGP_C3HHeJ_P0050172 Rbm14 protein_coding protein_coding MGP_C3HHeJ_T0050173.1 MGP_C3HHeJ_G0024408.1 mouse_genomes_project 19 1666247 1676904 - MGP_C3HHeJ_P0050173 Rbm14 protein_coding protein_coding MGP_C3HHeJ_T0050174.1 MGP_C3HHeJ_G0024408.1 mouse_genomes_project 19 1667102 1676831 - MGP_C3HHeJ_P0050174 Rbm14 protein_coding protein_coding MGP_C3HHeJ_T0051370.1 MGP_C3HHeJ_G0024830.1 mouse_genomes_project 19 37579326 37616228 + MGP_C3HHeJ_P0051370 Cyp2c55 protein_coding protein_coding MGP_C3HHeJ_T0050008.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 679853 688007 - Tcirg1 protein_coding retained_intron MGP_C3HHeJ_T0050009.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 679853 691312 - MGP_C3HHeJ_P0050009 Tcirg1 protein_coding protein_coding MGP_C3HHeJ_T0050010.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 679853 693215 - MGP_C3HHeJ_P0050010 Tcirg1 protein_coding protein_coding MGP_C3HHeJ_T0050011.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 679853 693073 - MGP_C3HHeJ_P0050011 Tcirg1 protein_coding protein_coding MGP_C3HHeJ_T0050012.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 679853 693194 - MGP_C3HHeJ_P0050012 Tcirg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050013.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 680073 686958 - MGP_C3HHeJ_P0050013 Tcirg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050014.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 680203 681034 - Tcirg1 protein_coding retained_intron MGP_C3HHeJ_T0050015.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 680874 681635 - Tcirg1 protein_coding retained_intron MGP_C3HHeJ_T0050016.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 683286 688290 - MGP_C3HHeJ_P0050016 Tcirg1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050017.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 687177 688181 - Tcirg1 protein_coding retained_intron MGP_C3HHeJ_T0050018.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 687428 693122 - Tcirg1 protein_coding retained_intron MGP_C3HHeJ_T0050019.1 MGP_C3HHeJ_G0024365.1 mouse_genomes_project 19 687628 689356 - Tcirg1 protein_coding retained_intron MGP_C3HHeJ_T0051371.1 MGP_C3HHeJ_G0024831.1 mouse_genomes_project 19 37633842 37670586 + MGP_C3HHeJ_P0051371 Cyp2c65 protein_coding protein_coding MGP_C3HHeJ_T0051289.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943384 35012457 + MGP_C3HHeJ_P0051289 Hectd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051290.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943413 35011567 + MGP_C3HHeJ_P0051290 Hectd2 protein_coding protein_coding MGP_C3HHeJ_T0051291.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943414 34982476 + Hectd2 protein_coding retained_intron MGP_C3HHeJ_T0051292.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943414 35012460 + MGP_C3HHeJ_P0051292 Hectd2 protein_coding protein_coding MGP_C3HHeJ_T0051293.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943423 34988710 + Hectd2 protein_coding retained_intron MGP_C3HHeJ_T0051294.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943580 34960020 + Hectd2 protein_coding retained_intron MGP_C3HHeJ_T0051295.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34943611 35010169 + MGP_C3HHeJ_P0051295 Hectd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051296.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34976817 35010169 + MGP_C3HHeJ_P0051296 Hectd2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051297.1 MGP_C3HHeJ_G0024805.1 mouse_genomes_project 19 34996495 35003727 + Hectd2 protein_coding retained_intron MGP_C3HHeJ_T0050200.1 MGP_C3HHeJ_G0024422.1 mouse_genomes_project 19 1927244 1933507 + MGP_C3HHeJ_P0050200 Rin1 protein_coding protein_coding MGP_C3HHeJ_T0050201.1 MGP_C3HHeJ_G0024422.1 mouse_genomes_project 19 1927295 1933516 + MGP_C3HHeJ_P0050201 Rin1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0011387.1 MGP_C3HHeJ_G0009520.1 mouse_genomes_project 19 36993456 36993539 - Gm24930 misc_RNA misc_RNA MGP_C3HHeJ_T0050775.1 MGP_C3HHeJ_G0024581.1 mouse_genomes_project 19 7509972 7531999 + MGP_C3HHeJ_P0050775 Cpsf7 protein_coding protein_coding MGP_C3HHeJ_T0050520.1 MGP_C3HHeJ_G0024502.1 mouse_genomes_project 19 3910504 3913786 - Prdx5 protein_coding retained_intron MGP_C3HHeJ_T0050521.1 MGP_C3HHeJ_G0024502.1 mouse_genomes_project 19 3910513 3913914 - MGP_C3HHeJ_P0050521 Prdx5 protein_coding protein_coding MGP_C3HHeJ_T0050522.1 MGP_C3HHeJ_G0024502.1 mouse_genomes_project 19 3910557 3912109 - MGP_C3HHeJ_P0050522 Prdx5 protein_coding protein_coding MGP_C3HHeJ_T0050523.1 MGP_C3HHeJ_G0024502.1 mouse_genomes_project 19 3910653 3913425 - MGP_C3HHeJ_P0050523 Prdx5 protein_coding protein_coding MGP_C3HHeJ_T0050959.1 MGP_C3HHeJ_G0024671.1 mouse_genomes_project 19 10555055 10555981 - MGP_C3HHeJ_P0050959 Olfr1465 protein_coding protein_coding MGP_C3HHeJ_T0051309.1 MGP_C3HHeJ_G0024809.1 mouse_genomes_project 19 35337778 35431195 + MGP_C3HHeJ_P0051309 Btaf1 protein_coding protein_coding MGP_C3HHeJ_T0051876.1 MGP_C3HHeJ_G0024996.1 mouse_genomes_project 19 56020508 56039472 - MGP_C3HHeJ_P0051876 Dclre1a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051877.1 MGP_C3HHeJ_G0024996.1 mouse_genomes_project 19 56020510 56038490 - Dclre1a protein_coding retained_intron MGP_C3HHeJ_T0051878.1 MGP_C3HHeJ_G0024996.1 mouse_genomes_project 19 56020510 56039545 - MGP_C3HHeJ_P0051878 Dclre1a protein_coding protein_coding MGP_C3HHeJ_T0051879.1 MGP_C3HHeJ_G0024996.1 mouse_genomes_project 19 56020923 56028723 - Dclre1a protein_coding retained_intron MGP_C3HHeJ_T0051880.1 MGP_C3HHeJ_G0024996.1 mouse_genomes_project 19 56031350 56032888 - Dclre1a protein_coding processed_transcript MGP_C3HHeJ_T0051881.1 MGP_C3HHeJ_G0024996.1 mouse_genomes_project 19 56038192 56039365 - MGP_C3HHeJ_P0051881 Dclre1a protein_coding protein_coding MGP_C3HHeJ_T0050734.1 MGP_C3HHeJ_G0024565.1 mouse_genomes_project 19 6793850 6799084 + MGP_C3HHeJ_P0050734 Scgb2a2 protein_coding protein_coding MGP_C3HHeJ_T0011379.1 MGP_C3HHeJ_G0009512.1 mouse_genomes_project 19 5802050 5802379 - Gm22820 misc_RNA misc_RNA MGP_C3HHeJ_T0051379.1 MGP_C3HHeJ_G0024836.1 mouse_genomes_project 19 38178690 38392474 - protein_coding processed_transcript MGP_C3HHeJ_T0051380.1 MGP_C3HHeJ_G0024836.1 mouse_genomes_project 19 38194185 38200134 - MGP_C3HHeJ_P0051380 protein_coding protein_coding MGP_C3HHeJ_T0051381.1 MGP_C3HHeJ_G0024836.1 mouse_genomes_project 19 38335957 38392539 - MGP_C3HHeJ_P0051381 protein_coding protein_coding MGP_C3HHeJ_T0017450.1 MGP_C3HHeJ_G0015137.1 mouse_genomes_project 19 1287598 1296887 + A930001C03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017451.1 MGP_C3HHeJ_G0015137.1 mouse_genomes_project 19 1288153 1296744 + A930001C03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017452.1 MGP_C3HHeJ_G0015137.1 mouse_genomes_project 19 1292284 1296424 + A930001C03Rik processed_transcript processed_transcript MGP_C3HHeJ_T0017453.1 MGP_C3HHeJ_G0015137.1 mouse_genomes_project 19 1295373 1296893 + A930001C03Rik processed_transcript retained_intron MGP_C3HHeJ_T0051742.1 MGP_C3HHeJ_G0024955.1 mouse_genomes_project 19 46178216 46210934 - MGP_C3HHeJ_P0051742 Calhm2 protein_coding protein_coding MGP_C3HHeJ_T0051743.1 MGP_C3HHeJ_G0024955.1 mouse_genomes_project 19 46204473 46210934 - MGP_C3HHeJ_P0051743 Calhm2 protein_coding protein_coding MGP_C3HHeJ_T0051030.1 MGP_C3HHeJ_G0024708.1 mouse_genomes_project 19 18300105 18335050 - MGP_C3HHeJ_P0051030 Aldh1a7 protein_coding protein_coding MGP_C3HHeJ_T0051826.1 MGP_C3HHeJ_G0024985.1 mouse_genomes_project 19 54486983 54523249 - MGP_C3HHeJ_P0051826 Gpam protein_coding unknown_likely_coding MGP_C3HHeJ_T0050053.1 MGP_C3HHeJ_G0024378.1 mouse_genomes_project 19 899135 903234 + MGP_C3HHeJ_P0050053 Cabp2 protein_coding protein_coding MGP_C3HHeJ_T0050054.1 MGP_C3HHeJ_G0024378.1 mouse_genomes_project 19 900045 904894 + MGP_C3HHeJ_P0050054 Cabp2 protein_coding protein_coding MGP_C3HHeJ_T0050055.1 MGP_C3HHeJ_G0024378.1 mouse_genomes_project 19 901047 904898 + MGP_C3HHeJ_P0050055 Cabp2 protein_coding protein_coding MGP_C3HHeJ_T0050056.1 MGP_C3HHeJ_G0024378.1 mouse_genomes_project 19 901076 904898 + MGP_C3HHeJ_P0050056 Cabp2 protein_coding protein_coding MGP_C3HHeJ_T0050057.1 MGP_C3HHeJ_G0024378.1 mouse_genomes_project 19 904032 904895 + Cabp2 protein_coding processed_transcript MGP_C3HHeJ_T0007002.1 MGP_C3HHeJ_G0005744.1 mouse_genomes_project 19 32769259 32771070 + Gm26902 lincRNA lincRNA MGP_C3HHeJ_T0007003.1 MGP_C3HHeJ_G0005744.1 mouse_genomes_project 19 32769284 32775983 + Gm26902 lincRNA lincRNA MGP_C3HHeJ_T0050965.1 MGP_C3HHeJ_G0024677.1 mouse_genomes_project 19 10895468 10896610 + MGP_C3HHeJ_P0050965 protein_coding protein_coding MGP_C3HHeJ_T0050279.1 MGP_C3HHeJ_G0024452.1 mouse_genomes_project 19 2522767 2529841 - MGP_C3HHeJ_P0050279 Kat5 protein_coding protein_coding MGP_C3HHeJ_T0099147.1 MGP_C3HHeJ_G0037341.1 mouse_genomes_project 19 1772433 1772543 + Gm25334 snRNA snRNA MGP_C3HHeJ_T0007034.1 MGP_C3HHeJ_G0005768.1 mouse_genomes_project 19 59795715 59813639 + E330013P04Rik lincRNA lincRNA MGP_C3HHeJ_T0007035.1 MGP_C3HHeJ_G0005768.1 mouse_genomes_project 19 59795744 59804119 + E330013P04Rik lincRNA lincRNA MGP_C3HHeJ_T0007036.1 MGP_C3HHeJ_G0005768.1 mouse_genomes_project 19 59802323 59808375 + E330013P04Rik lincRNA lincRNA MGP_C3HHeJ_T0050833.1 MGP_C3HHeJ_G0024603.1 mouse_genomes_project 19 8107486 8142279 - MGP_C3HHeJ_P0050833 1700017D01Rik protein_coding protein_coding MGP_C3HHeJ_T0050834.1 MGP_C3HHeJ_G0024603.1 mouse_genomes_project 19 8120911 8123378 - 1700017D01Rik protein_coding retained_intron MGP_C3HHeJ_T0051246.1 MGP_C3HHeJ_G0024783.1 mouse_genomes_project 19 32301687 32336376 + MGP_C3HHeJ_P0051246 Lipk protein_coding protein_coding MGP_C3HHeJ_T0050810.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7905102 7915404 + MGP_C3HHeJ_P0050810 Prpf19 protein_coding protein_coding MGP_C3HHeJ_T0050811.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7905148 7907783 + Prpf19 protein_coding retained_intron MGP_C3HHeJ_T0050812.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7905153 7908132 + Prpf19 protein_coding retained_intron MGP_C3HHeJ_T0050813.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7905244 7909239 + Prpf19 protein_coding retained_intron MGP_C3HHeJ_T0050814.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7905285 7919437 + MGP_C3HHeJ_P0050814 Prpf19 protein_coding protein_coding MGP_C3HHeJ_T0050815.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7908516 7915378 + Prpf19 protein_coding processed_transcript MGP_C3HHeJ_T0050816.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7909240 7912632 + Prpf19 protein_coding retained_intron MGP_C3HHeJ_T0050817.1 MGP_C3HHeJ_G0024595.1 mouse_genomes_project 19 7910153 7910865 + Prpf19 protein_coding retained_intron MGP_C3HHeJ_T0050604.1 MGP_C3HHeJ_G0024528.1 mouse_genomes_project 19 4609237 4640933 + MGP_C3HHeJ_P0050604 Pla2g16 protein_coding protein_coding MGP_C3HHeJ_T0050605.1 MGP_C3HHeJ_G0024528.1 mouse_genomes_project 19 4609237 4634116 + MGP_C3HHeJ_P0050605 Pla2g16 protein_coding protein_coding MGP_C3HHeJ_T0050606.1 MGP_C3HHeJ_G0024528.1 mouse_genomes_project 19 4609255 4631525 + MGP_C3HHeJ_P0050606 Pla2g16 protein_coding protein_coding MGP_C3HHeJ_T0050607.1 MGP_C3HHeJ_G0024528.1 mouse_genomes_project 19 4609263 4639099 + MGP_C3HHeJ_P0050607 Pla2g16 protein_coding protein_coding MGP_C3HHeJ_T0013243.1 MGP_C3HHeJ_G0011347.1 mouse_genomes_project 19 18189108 18189792 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100405.1 MGP_C3HHeJ_G0038599.1 mouse_genomes_project 19 5846914 5847040 + Snord22 snoRNA snoRNA MGP_C3HHeJ_T0050500.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3403249 3521910 + MGP_C3HHeJ_P0050500 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050501.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3403256 3453932 + Nrxn2 protein_coding retained_intron MGP_C3HHeJ_T0050502.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3403256 3521909 + MGP_C3HHeJ_P0050502 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050503.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3403283 3520971 + MGP_C3HHeJ_P0050503 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050504.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3413229 3521910 + MGP_C3HHeJ_P0050504 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050505.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3413938 3459510 + MGP_C3HHeJ_P0050505 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050506.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3414059 3460469 + MGP_C3HHeJ_P0050506 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050507.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3430589 3460483 + Nrxn2 protein_coding processed_transcript MGP_C3HHeJ_T0050508.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3431427 3460581 + Nrxn2 protein_coding processed_transcript MGP_C3HHeJ_T0050509.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3439687 3469730 + Nrxn2 protein_coding retained_intron MGP_C3HHeJ_T0050510.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3460238 3469729 + Nrxn2 protein_coding retained_intron MGP_C3HHeJ_T0050511.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3485832 3498558 + Nrxn2 protein_coding processed_transcript MGP_C3HHeJ_T0050512.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3485989 3521910 + MGP_C3HHeJ_P0050512 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050513.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3485996 3532862 + MGP_C3HHeJ_P0050513 Nrxn2 protein_coding protein_coding MGP_C3HHeJ_T0050514.1 MGP_C3HHeJ_G0024498.1 mouse_genomes_project 19 3505897 3520989 + Nrxn2 protein_coding processed_transcript MGP_C3HHeJ_T0010204.1 MGP_C3HHeJ_G0008337.1 mouse_genomes_project 19 3330128 3330193 + Mir6989 miRNA miRNA MGP_C3HHeJ_T0010199.1 MGP_C3HHeJ_G0008332.1 mouse_genomes_project 19 1482962 1483020 - Mir6986 miRNA miRNA MGP_C3HHeJ_T0051247.1 MGP_C3HHeJ_G0024784.1 mouse_genomes_project 19 32360096 32387533 + MGP_C3HHeJ_P0051247 Lipn protein_coding protein_coding MGP_C3HHeJ_T0051248.1 MGP_C3HHeJ_G0024784.1 mouse_genomes_project 19 32360116 32372890 + MGP_C3HHeJ_P0051248 Lipn protein_coding protein_coding MGP_C3HHeJ_T0051249.1 MGP_C3HHeJ_G0024784.1 mouse_genomes_project 19 32360267 32383813 + MGP_C3HHeJ_P0051249 Lipn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051560.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42933267 42969016 - MGP_C3HHeJ_P0051560 Chuk protein_coding protein_coding MGP_C3HHeJ_T0051561.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42933268 42969013 - MGP_C3HHeJ_P0051561 Chuk protein_coding protein_coding MGP_C3HHeJ_T0051562.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42934305 42935837 - Chuk protein_coding retained_intron MGP_C3HHeJ_T0051563.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42936870 42938955 - Chuk protein_coding retained_intron MGP_C3HHeJ_T0051564.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42937176 42944987 - Chuk protein_coding retained_intron MGP_C3HHeJ_T0051565.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42938209 42939202 - Chuk protein_coding retained_intron MGP_C3HHeJ_T0051566.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42941318 42969005 - Chuk protein_coding retained_intron MGP_C3HHeJ_T0051567.1 MGP_C3HHeJ_G0024894.1 mouse_genomes_project 19 42958709 42968818 - Chuk protein_coding retained_intron MGP_C3HHeJ_T0049958.1 MGP_C3HHeJ_G0024356.1 mouse_genomes_project 19 33434 43365 + MGP_C3HHeJ_P0049958 Mrpl21 protein_coding protein_coding MGP_C3HHeJ_T0049959.1 MGP_C3HHeJ_G0024356.1 mouse_genomes_project 19 33588 39707 + Mrpl21 protein_coding retained_intron MGP_C3HHeJ_T0049960.1 MGP_C3HHeJ_G0024356.1 mouse_genomes_project 19 33593 35857 + Mrpl21 protein_coding retained_intron MGP_C3HHeJ_T0049961.1 MGP_C3HHeJ_G0024356.1 mouse_genomes_project 19 33593 41729 + MGP_C3HHeJ_P0049961 Mrpl21 protein_coding protein_coding MGP_C3HHeJ_T0049962.1 MGP_C3HHeJ_G0024356.1 mouse_genomes_project 19 33597 38271 + MGP_C3HHeJ_P0049962 Mrpl21 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0049963.1 MGP_C3HHeJ_G0024356.1 mouse_genomes_project 19 37342 41723 + Mrpl21 protein_coding retained_intron MGP_C3HHeJ_T0051203.1 MGP_C3HHeJ_G0024766.1 mouse_genomes_project 19 28592010 28595890 - MGP_C3HHeJ_P0051203 Dkk1 protein_coding protein_coding MGP_C3HHeJ_T0050567.1 MGP_C3HHeJ_G0024521.1 mouse_genomes_project 19 4258096 4273647 - MGP_C3HHeJ_P0050567 Naa40 protein_coding protein_coding MGP_C3HHeJ_T0010244.1 MGP_C3HHeJ_G0008377.1 mouse_genomes_project 19 58516706 58516793 - Mir3086 miRNA miRNA MGP_C3HHeJ_T0050561.1 MGP_C3HHeJ_G0024519.1 mouse_genomes_project 19 4118061 4131718 - MGP_C3HHeJ_P0050561 Flrt1 protein_coding protein_coding MGP_C3HHeJ_T0007007.1 MGP_C3HHeJ_G0005748.1 mouse_genomes_project 19 36540886 36543868 - I830134H01Rik lincRNA lincRNA MGP_C3HHeJ_T0007008.1 MGP_C3HHeJ_G0005748.1 mouse_genomes_project 19 36540996 36543868 - I830134H01Rik lincRNA lincRNA MGP_C3HHeJ_T0051144.1 MGP_C3HHeJ_G0024746.1 mouse_genomes_project 19 26930343 26933199 + MGP_C3HHeJ_P0051144 Plpp6 protein_coding protein_coding MGP_C3HHeJ_T0051476.1 MGP_C3HHeJ_G0024865.1 mouse_genomes_project 19 40744394 40800030 + MGP_C3HHeJ_P0051476 Ubtd1 protein_coding protein_coding MGP_C3HHeJ_T0050942.1 MGP_C3HHeJ_G0024654.1 mouse_genomes_project 19 10003063 10037644 + MGP_C3HHeJ_P0050942 Lpxn protein_coding protein_coding MGP_C3HHeJ_T0051239.1 MGP_C3HHeJ_G0024779.1 mouse_genomes_project 19 31679675 31707560 - MGP_C3HHeJ_P0051239 protein_coding protein_coding MGP_C3HHeJ_T0051268.1 MGP_C3HHeJ_G0024794.1 mouse_genomes_project 19 32914846 32920131 + MGP_C3HHeJ_P0051268 protein_coding protein_coding MGP_C3HHeJ_T0017504.1 MGP_C3HHeJ_G0015153.1 mouse_genomes_project 19 59579868 59584532 + Gm4219 processed_transcript processed_transcript MGP_C3HHeJ_T0051149.1 MGP_C3HHeJ_G0024749.1 mouse_genomes_project 19 27071379 27120749 + MGP_C3HHeJ_P0051149 Rcl1 protein_coding protein_coding MGP_C3HHeJ_T0100417.1 MGP_C3HHeJ_G0038611.1 mouse_genomes_project 19 33549855 33549987 + Gm24006 snoRNA snoRNA MGP_C3HHeJ_T0051616.1 MGP_C3HHeJ_G0024915.1 mouse_genomes_project 19 44004463 44008496 + MGP_C3HHeJ_P0051616 Kazald1 protein_coding protein_coding MGP_C3HHeJ_T0051617.1 MGP_C3HHeJ_G0024915.1 mouse_genomes_project 19 44005361 44008496 + MGP_C3HHeJ_P0051617 Kazald1 protein_coding protein_coding MGP_C3HHeJ_T0050239.1 MGP_C3HHeJ_G0024440.1 mouse_genomes_project 19 2349833 2358065 + MGP_C3HHeJ_P0050239 Fosl1 protein_coding protein_coding MGP_C3HHeJ_T0051951.1 MGP_C3HHeJ_G0025017.1 mouse_genomes_project 19 58837682 58854008 + MGP_C3HHeJ_P0051951 Kcnk18 protein_coding protein_coding MGP_C3HHeJ_T0097887.1 MGP_C3HHeJ_G0036099.1 mouse_genomes_project 19 14212548 14213105 + pseudogene pseudogene MGP_C3HHeJ_T0050405.1 MGP_C3HHeJ_G0024487.1 mouse_genomes_project 19 3162081 3201571 + MGP_C3HHeJ_P0050405 Majin protein_coding protein_coding MGP_C3HHeJ_T0050406.1 MGP_C3HHeJ_G0024487.1 mouse_genomes_project 19 3162160 3201577 + MGP_C3HHeJ_P0050406 Majin protein_coding protein_coding MGP_C3HHeJ_T0010221.1 MGP_C3HHeJ_G0008354.1 mouse_genomes_project 19 31305289 31305379 + Mir3970 miRNA miRNA MGP_C3HHeJ_T0051787.1 MGP_C3HHeJ_G0024970.1 mouse_genomes_project 19 49197110 49197722 - MGP_C3HHeJ_P0051787 Rpl13a-ps1 protein_coding protein_coding MGP_C3HHeJ_T0051135.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26856762 26875425 - MGP_C3HHeJ_P0051135 4430402I18Rik protein_coding protein_coding MGP_C3HHeJ_T0051137.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26864839 26934118 - MGP_C3HHeJ_P0051137 4430402I18Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051138.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26886697 26930545 - MGP_C3HHeJ_P0051138 4430402I18Rik protein_coding protein_coding MGP_C3HHeJ_T0051139.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26887163 26934188 - MGP_C3HHeJ_P0051139 4430402I18Rik protein_coding protein_coding MGP_C3HHeJ_T0051140.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26887166 26892861 - 4430402I18Rik protein_coding processed_transcript MGP_C3HHeJ_T0051141.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26887321 26929969 - MGP_C3HHeJ_P0051141 4430402I18Rik protein_coding protein_coding MGP_C3HHeJ_T0051142.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26887321 26929969 - MGP_C3HHeJ_P0051142 4430402I18Rik protein_coding protein_coding MGP_C3HHeJ_T0051143.1 MGP_C3HHeJ_G0024745.1 mouse_genomes_project 19 26914012 26930299 - MGP_C3HHeJ_P0051143 4430402I18Rik protein_coding protein_coding MGP_C3HHeJ_T0010201.1 MGP_C3HHeJ_G0008334.1 mouse_genomes_project 19 2603023 2603096 - Mir6987 miRNA miRNA MGP_C3HHeJ_T0051944.1 MGP_C3HHeJ_G0025014.1 mouse_genomes_project 19 58549646 58581312 + MGP_C3HHeJ_P0051944 Eno4 protein_coding protein_coding MGP_C3HHeJ_T0051945.1 MGP_C3HHeJ_G0025014.1 mouse_genomes_project 19 58549646 58581310 + MGP_C3HHeJ_P0051945 Eno4 protein_coding protein_coding MGP_C3HHeJ_T0051946.1 MGP_C3HHeJ_G0025014.1 mouse_genomes_project 19 58560806 58581308 + MGP_C3HHeJ_P0051946 Eno4 protein_coding protein_coding MGP_C3HHeJ_T0051947.1 MGP_C3HHeJ_G0025014.1 mouse_genomes_project 19 58563088 58580824 + MGP_C3HHeJ_P0051947 Eno4 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0013259.1 MGP_C3HHeJ_G0011363.1 mouse_genomes_project 19 56257334 56257682 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051501.1 MGP_C3HHeJ_G0024877.1 mouse_genomes_project 19 41297571 41367125 + MGP_C3HHeJ_P0051501 R3hcc1l protein_coding protein_coding MGP_C3HHeJ_T0051502.1 MGP_C3HHeJ_G0024877.1 mouse_genomes_project 19 41297610 41365793 + MGP_C3HHeJ_P0051502 R3hcc1l protein_coding protein_coding MGP_C3HHeJ_T0051503.1 MGP_C3HHeJ_G0024877.1 mouse_genomes_project 19 41297634 41350972 + MGP_C3HHeJ_P0051503 R3hcc1l protein_coding protein_coding MGP_C3HHeJ_T0051504.1 MGP_C3HHeJ_G0024877.1 mouse_genomes_project 19 41339308 41351541 + R3hcc1l protein_coding retained_intron MGP_C3HHeJ_T0051505.1 MGP_C3HHeJ_G0024877.1 mouse_genomes_project 19 41355937 41359533 + R3hcc1l protein_coding retained_intron MGP_C3HHeJ_T0006989.1 MGP_C3HHeJ_G0005736.1 mouse_genomes_project 19 20721436 20761907 - C330002G04Rik lincRNA lincRNA MGP_C3HHeJ_T0011390.1 MGP_C3HHeJ_G0009523.1 mouse_genomes_project 19 58387949 58388033 - Gm22561 misc_RNA misc_RNA MGP_C3HHeJ_T0050908.1 MGP_C3HHeJ_G0024635.1 mouse_genomes_project 19 9382125 9385838 + MGP_C3HHeJ_P0050908 protein_coding protein_coding MGP_C3HHeJ_T0050102.1 MGP_C3HHeJ_G0024389.1 mouse_genomes_project 19 1015048 1019352 + MGP_C3HHeJ_P0050102 Ppp1ca protein_coding protein_coding MGP_C3HHeJ_T0013253.1 MGP_C3HHeJ_G0011357.1 mouse_genomes_project 19 39325852 39326610 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050839.1 MGP_C3HHeJ_G0024605.1 mouse_genomes_project 19 8184485 8214024 - MGP_C3HHeJ_P0050839 Ms4a13 protein_coding protein_coding MGP_C3HHeJ_T0050840.1 MGP_C3HHeJ_G0024605.1 mouse_genomes_project 19 8184486 8214038 - MGP_C3HHeJ_P0050840 Ms4a13 protein_coding protein_coding MGP_C3HHeJ_T0050203.1 MGP_C3HHeJ_G0024424.1 mouse_genomes_project 19 1947251 1948525 - Tmem151a protein_coding processed_transcript MGP_C3HHeJ_T0050204.1 MGP_C3HHeJ_G0024424.1 mouse_genomes_project 19 1947427 1962269 - MGP_C3HHeJ_P0050204 Tmem151a protein_coding protein_coding MGP_C3HHeJ_T0050205.1 MGP_C3HHeJ_G0024424.1 mouse_genomes_project 19 1948246 1962269 - MGP_C3HHeJ_P0050205 Tmem151a protein_coding protein_coding MGP_C3HHeJ_T0050206.1 MGP_C3HHeJ_G0024424.1 mouse_genomes_project 19 1956145 1962313 - MGP_C3HHeJ_P0050206 Tmem151a protein_coding protein_coding MGP_C3HHeJ_T0050207.1 MGP_C3HHeJ_G0024424.1 mouse_genomes_project 19 1959717 1961663 - Tmem151a protein_coding processed_transcript MGP_C3HHeJ_T0050974.1 MGP_C3HHeJ_G0024686.1 mouse_genomes_project 19 11136609 11137634 - MGP_C3HHeJ_P0050974 Olfr1500 protein_coding protein_coding MGP_C3HHeJ_T0051607.1 MGP_C3HHeJ_G0024912.1 mouse_genomes_project 19 43924730 43939209 + MGP_C3HHeJ_P0051607 Lzts2 protein_coding protein_coding MGP_C3HHeJ_T0051608.1 MGP_C3HHeJ_G0024912.1 mouse_genomes_project 19 43924764 43939209 + MGP_C3HHeJ_P0051608 Lzts2 protein_coding protein_coding MGP_C3HHeJ_T0051609.1 MGP_C3HHeJ_G0024912.1 mouse_genomes_project 19 43929004 43939209 + MGP_C3HHeJ_P0051609 Lzts2 protein_coding protein_coding MGP_C3HHeJ_T0050103.1 MGP_C3HHeJ_G0024390.1 mouse_genomes_project 19 1019130 1025536 - MGP_C3HHeJ_P0050103 Rad9a protein_coding protein_coding MGP_C3HHeJ_T0051263.1 MGP_C3HHeJ_G0024791.1 mouse_genomes_project 19 32786754 32823238 - MGP_C3HHeJ_P0051263 Lipa protein_coding protein_coding MGP_C3HHeJ_T0051264.1 MGP_C3HHeJ_G0024791.1 mouse_genomes_project 19 32786754 32823238 - MGP_C3HHeJ_P0051264 Lipa protein_coding protein_coding MGP_C3HHeJ_T0051079.1 MGP_C3HHeJ_G0024733.1 mouse_genomes_project 19 23047273 23258852 + MGP_C3HHeJ_P0051079 Kank1 protein_coding protein_coding MGP_C3HHeJ_T0051080.1 MGP_C3HHeJ_G0024733.1 mouse_genomes_project 19 23218755 23233390 + Kank1 protein_coding processed_transcript MGP_C3HHeJ_T0051081.1 MGP_C3HHeJ_G0024733.1 mouse_genomes_project 19 23230311 23250401 + MGP_C3HHeJ_P0051081 Kank1 protein_coding protein_coding MGP_C3HHeJ_T0051082.1 MGP_C3HHeJ_G0024733.1 mouse_genomes_project 19 23246724 23248993 + Kank1 protein_coding retained_intron MGP_C3HHeJ_T0050999.1 MGP_C3HHeJ_G0024698.1 mouse_genomes_project 19 14845981 14853269 + MGP_C3HHeJ_P0050999 Rfk protein_coding protein_coding MGP_C3HHeJ_T0051000.1 MGP_C3HHeJ_G0024698.1 mouse_genomes_project 19 14846506 14851778 + Rfk protein_coding processed_transcript MGP_C3HHeJ_T0051001.1 MGP_C3HHeJ_G0024698.1 mouse_genomes_project 19 14849375 14851881 + Rfk protein_coding processed_transcript MGP_C3HHeJ_T0050608.1 MGP_C3HHeJ_G0024529.1 mouse_genomes_project 19 4650909 4661437 - MGP_C3HHeJ_P0050608 Lgals12 protein_coding protein_coding MGP_C3HHeJ_T0050609.1 MGP_C3HHeJ_G0024529.1 mouse_genomes_project 19 4650910 4661422 - MGP_C3HHeJ_P0050609 Lgals12 protein_coding protein_coding MGP_C3HHeJ_T0050610.1 MGP_C3HHeJ_G0024529.1 mouse_genomes_project 19 4650963 4661347 - MGP_C3HHeJ_P0050610 Lgals12 protein_coding protein_coding MGP_C3HHeJ_T0051395.1 MGP_C3HHeJ_G0024842.1 mouse_genomes_project 19 38999646 39111478 - MGP_C3HHeJ_P0051395 Sorbs1 protein_coding protein_coding MGP_C3HHeJ_T0051396.1 MGP_C3HHeJ_G0024842.1 mouse_genomes_project 19 38999646 39111478 - MGP_C3HHeJ_P0051396 Sorbs1 protein_coding protein_coding MGP_C3HHeJ_T0051397.1 MGP_C3HHeJ_G0024842.1 mouse_genomes_project 19 38999646 39111478 - MGP_C3HHeJ_P0051397 Sorbs1 protein_coding protein_coding MGP_C3HHeJ_T0051398.1 MGP_C3HHeJ_G0024842.1 mouse_genomes_project 19 38999646 39111478 - MGP_C3HHeJ_P0051398 Sorbs1 protein_coding protein_coding MGP_C3HHeJ_T0051399.1 MGP_C3HHeJ_G0024842.1 mouse_genomes_project 19 39014077 39111478 - MGP_C3HHeJ_P0051399 Sorbs1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0010245.1 MGP_C3HHeJ_G0008378.1 mouse_genomes_project 19 60250919 60251008 + Gm25238 miRNA miRNA MGP_C3HHeJ_T0010208.1 MGP_C3HHeJ_G0008341.1 mouse_genomes_project 19 4467395 4467465 + Mir6991 miRNA miRNA MGP_C3HHeJ_T0051977.1 MGP_C3HHeJ_G0025029.1 mouse_genomes_project 19 60541831 60552039 - MGP_C3HHeJ_P0051977 Prdx3 protein_coding protein_coding MGP_C3HHeJ_T0050857.1 MGP_C3HHeJ_G0024611.1 mouse_genomes_project 19 8391024 8409612 + MGP_C3HHeJ_P0050857 Ms4a4a protein_coding protein_coding MGP_C3HHeJ_T0051618.1 MGP_C3HHeJ_G0024916.1 mouse_genomes_project 19 44076823 44083093 + MGP_C3HHeJ_P0051618 Tlx1 protein_coding protein_coding MGP_C3HHeJ_T0051619.1 MGP_C3HHeJ_G0024916.1 mouse_genomes_project 19 44077612 44082549 + MGP_C3HHeJ_P0051619 Tlx1 protein_coding protein_coding MGP_C3HHeJ_T0051620.1 MGP_C3HHeJ_G0024917.1 mouse_genomes_project 19 44178229 44181362 - MGP_C3HHeJ_P0051620 Lbx1 protein_coding protein_coding MGP_C3HHeJ_T0051943.1 MGP_C3HHeJ_G0025013.1 mouse_genomes_project 19 58397245 58464949 - MGP_C3HHeJ_P0051943 Hspa12a protein_coding protein_coding MGP_C3HHeJ_T0051581.1 MGP_C3HHeJ_G0024903.1 mouse_genomes_project 19 43410979 43439969 - MGP_C3HHeJ_P0051581 Sec31b protein_coding protein_coding MGP_C3HHeJ_T0051582.1 MGP_C3HHeJ_G0024903.1 mouse_genomes_project 19 43411332 43437818 - MGP_C3HHeJ_P0051582 Sec31b protein_coding protein_coding MGP_C3HHeJ_T0051583.1 MGP_C3HHeJ_G0024903.1 mouse_genomes_project 19 43411667 43414630 - MGP_C3HHeJ_P0051583 Sec31b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050399.1 MGP_C3HHeJ_G0024486.1 mouse_genomes_project 19 3119244 3150670 + Batf2 protein_coding processed_transcript MGP_C3HHeJ_T0050400.1 MGP_C3HHeJ_G0024486.1 mouse_genomes_project 19 3142635 3150673 + MGP_C3HHeJ_P0050400 Batf2 protein_coding protein_coding MGP_C3HHeJ_T0050401.1 MGP_C3HHeJ_G0024486.1 mouse_genomes_project 19 3142650 3149965 + Batf2 protein_coding retained_intron MGP_C3HHeJ_T0050402.1 MGP_C3HHeJ_G0024486.1 mouse_genomes_project 19 3142650 3149564 + Batf2 protein_coding retained_intron MGP_C3HHeJ_T0050403.1 MGP_C3HHeJ_G0024486.1 mouse_genomes_project 19 3142656 3149955 + Batf2 protein_coding processed_transcript MGP_C3HHeJ_T0050404.1 MGP_C3HHeJ_G0024486.1 mouse_genomes_project 19 3142685 3149564 + Batf2 protein_coding retained_intron MGP_C3HHeJ_T0013240.1 MGP_C3HHeJ_G0011344.1 mouse_genomes_project 19 13684363 13685343 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051941.1 MGP_C3HHeJ_G0025012.1 mouse_genomes_project 19 58387144 58395898 - MGP_C3HHeJ_P0051941 1700019N19Rik protein_coding protein_coding MGP_C3HHeJ_T0051942.1 MGP_C3HHeJ_G0025012.1 mouse_genomes_project 19 58387337 58394715 - MGP_C3HHeJ_P0051942 1700019N19Rik protein_coding protein_coding MGP_C3HHeJ_T0050334.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012317 3019466 + MGP_C3HHeJ_P0050334 Syvn1 protein_coding protein_coding MGP_C3HHeJ_T0050335.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012379 3014945 + MGP_C3HHeJ_P0050335 Syvn1 protein_coding protein_coding MGP_C3HHeJ_T0050336.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012403 3019463 + MGP_C3HHeJ_P0050336 Syvn1 protein_coding protein_coding MGP_C3HHeJ_T0050337.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012806 3019465 + Syvn1 protein_coding retained_intron MGP_C3HHeJ_T0050338.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012821 3019463 + MGP_C3HHeJ_P0050338 Syvn1 protein_coding protein_coding MGP_C3HHeJ_T0050339.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012826 3015393 + Syvn1 protein_coding retained_intron MGP_C3HHeJ_T0050340.1 MGP_C3HHeJ_G0024471.1 mouse_genomes_project 19 3012845 3019463 + MGP_C3HHeJ_P0050340 Syvn1 protein_coding protein_coding MGP_C3HHeJ_T0050316.1 MGP_C3HHeJ_G0024464.1 mouse_genomes_project 19 2812527 2822155 + MGP_C3HHeJ_P0050316 Slc25a45 protein_coding protein_coding MGP_C3HHeJ_T0050317.1 MGP_C3HHeJ_G0024464.1 mouse_genomes_project 19 2813338 2815307 + MGP_C3HHeJ_P0050317 Slc25a45 protein_coding protein_coding MGP_C3HHeJ_T0050318.1 MGP_C3HHeJ_G0024464.1 mouse_genomes_project 19 2813365 2821380 + MGP_C3HHeJ_P0050318 Slc25a45 protein_coding protein_coding MGP_C3HHeJ_T0050319.1 MGP_C3HHeJ_G0024464.1 mouse_genomes_project 19 2813366 2820874 + MGP_C3HHeJ_P0050319 Slc25a45 protein_coding protein_coding MGP_C3HHeJ_T0051382.1 MGP_C3HHeJ_G0024837.1 mouse_genomes_project 19 38335959 38392509 - MGP_C3HHeJ_P0051382 protein_coding protein_coding MGP_C3HHeJ_T0051262.1 MGP_C3HHeJ_G0024790.1 mouse_genomes_project 19 32768237 32769587 - MGP_C3HHeJ_P0051262 Ch25h protein_coding protein_coding MGP_C3HHeJ_T0051577.1 MGP_C3HHeJ_G0024900.1 mouse_genomes_project 19 43210026 43211658 + Scd4 protein_coding retained_intron MGP_C3HHeJ_T0051578.1 MGP_C3HHeJ_G0024900.1 mouse_genomes_project 19 43210026 43224601 + MGP_C3HHeJ_P0051578 Scd4 protein_coding protein_coding MGP_C3HHeJ_T0050387.1 MGP_C3HHeJ_G0024482.1 mouse_genomes_project 19 3075249 3085189 + MGP_C3HHeJ_P0050387 Naaladl1 protein_coding protein_coding MGP_C3HHeJ_T0010196.1 MGP_C3HHeJ_G0008329.1 mouse_genomes_project 19 39447 39511 + Mir6984 miRNA miRNA MGP_C3HHeJ_T0017501.1 MGP_C3HHeJ_G0015151.1 mouse_genomes_project 19 41564141 41567651 + Gm16244 processed_transcript processed_transcript MGP_C3HHeJ_T0017502.1 MGP_C3HHeJ_G0015151.1 mouse_genomes_project 19 41564219 41565373 + Gm16244 processed_transcript processed_transcript MGP_C3HHeJ_T0097889.1 MGP_C3HHeJ_G0036101.1 mouse_genomes_project 19 59879346 59880688 + pseudogene pseudogene MGP_C3HHeJ_T0011381.1 MGP_C3HHeJ_G0009514.1 mouse_genomes_project 19 14501155 14501416 - Gm27796 misc_RNA misc_RNA MGP_C3HHeJ_T0051537.1 MGP_C3HHeJ_G0024888.1 mouse_genomes_project 19 42597933 42614221 + MGP_C3HHeJ_P0051537 Cutc protein_coding protein_coding MGP_C3HHeJ_T0051538.1 MGP_C3HHeJ_G0024888.1 mouse_genomes_project 19 42598035 42614228 + MGP_C3HHeJ_P0051538 Cutc protein_coding protein_coding MGP_C3HHeJ_T0051539.1 MGP_C3HHeJ_G0024888.1 mouse_genomes_project 19 42598074 42613828 + MGP_C3HHeJ_P0051539 Cutc protein_coding protein_coding MGP_C3HHeJ_T0051540.1 MGP_C3HHeJ_G0024888.1 mouse_genomes_project 19 42610462 42614228 + Cutc protein_coding retained_intron MGP_C3HHeJ_T0050979.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13291117 13313815 - MGP_C3HHeJ_P0050979 Psat1 protein_coding protein_coding MGP_C3HHeJ_T0050980.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13291566 13313378 - MGP_C3HHeJ_P0050980 Psat1 protein_coding protein_coding MGP_C3HHeJ_T0050981.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13291569 13297704 - Psat1 protein_coding retained_intron MGP_C3HHeJ_T0050982.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13302993 13337212 - MGP_C3HHeJ_P0050982 Psat1 protein_coding protein_coding MGP_C3HHeJ_T0050983.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13305636 13307135 - Psat1 protein_coding processed_transcript MGP_C3HHeJ_T0050984.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13307200 13310213 - Psat1 protein_coding retained_intron MGP_C3HHeJ_T0050985.1 MGP_C3HHeJ_G0024690.1 mouse_genomes_project 19 13309300 13313686 - Psat1 protein_coding retained_intron MGP_C3HHeJ_T0099167.1 MGP_C3HHeJ_G0037361.1 mouse_genomes_project 19 50456530 50456637 - Gm25644 snRNA snRNA MGP_C3HHeJ_T0051778.1 MGP_C3HHeJ_G0024966.1 mouse_genomes_project 19 46958740 46969798 + MGP_C3HHeJ_P0051778 Gsto1 protein_coding protein_coding MGP_C3HHeJ_T0051779.1 MGP_C3HHeJ_G0024966.1 mouse_genomes_project 19 46958853 46959496 + Gsto1 protein_coding retained_intron MGP_C3HHeJ_T0051780.1 MGP_C3HHeJ_G0024966.1 mouse_genomes_project 19 46968040 46969575 + Gsto1 protein_coding retained_intron MGP_C3HHeJ_T0051744.1 MGP_C3HHeJ_G0024956.1 mouse_genomes_project 19 46213670 46216832 - MGP_C3HHeJ_P0051744 Calhm1 protein_coding protein_coding MGP_C3HHeJ_T0013226.1 MGP_C3HHeJ_G0011330.1 mouse_genomes_project 19 3010439 3010571 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051960.1 MGP_C3HHeJ_G0025022.1 mouse_genomes_project 19 59848198 59879359 - MGP_C3HHeJ_P0051960 Fam204a protein_coding unknown_likely_coding MGP_C3HHeJ_T0050903.1 MGP_C3HHeJ_G0024630.1 mouse_genomes_project 19 9079688 9109134 + MGP_C3HHeJ_P0050903 Osbp protein_coding protein_coding MGP_C3HHeJ_T0007017.1 MGP_C3HHeJ_G0005756.1 mouse_genomes_project 19 44285259 44293929 - Gm28578 lincRNA lincRNA MGP_C3HHeJ_T0007018.1 MGP_C3HHeJ_G0005756.1 mouse_genomes_project 19 44285279 44286025 - Gm28578 lincRNA lincRNA MGP_C3HHeJ_T0007019.1 MGP_C3HHeJ_G0005756.1 mouse_genomes_project 19 44291076 44293915 - Gm28578 lincRNA lincRNA MGP_C3HHeJ_T0017489.1 MGP_C3HHeJ_G0015147.1 mouse_genomes_project 19 24507029 24509627 - Gm20616 processed_transcript processed_transcript MGP_C3HHeJ_T0017490.1 MGP_C3HHeJ_G0015147.1 mouse_genomes_project 19 24507240 24509618 - Gm20616 processed_transcript processed_transcript MGP_C3HHeJ_T0013247.1 MGP_C3HHeJ_G0011351.1 mouse_genomes_project 19 25772401 25772754 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051018.1 MGP_C3HHeJ_G0024705.1 mouse_genomes_project 19 16454029 16531971 - MGP_C3HHeJ_P0051018 Rorb protein_coding protein_coding MGP_C3HHeJ_T0051019.1 MGP_C3HHeJ_G0024705.1 mouse_genomes_project 19 16465760 16643665 - MGP_C3HHeJ_P0051019 Rorb protein_coding protein_coding MGP_C3HHeJ_T0051020.1 MGP_C3HHeJ_G0024705.1 mouse_genomes_project 19 16507052 16531954 - Rorb protein_coding retained_intron MGP_C3HHeJ_T0051021.1 MGP_C3HHeJ_G0024705.1 mouse_genomes_project 19 16507070 16531965 - Rorb protein_coding retained_intron MGP_C3HHeJ_T0013224.1 MGP_C3HHeJ_G0011328.1 mouse_genomes_project 19 292 1605 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0098246.1 MGP_C3HHeJ_G0036458.1 mouse_genomes_project 19 35573929 35574007 - Gm22714 ribozyme ribozyme MGP_C3HHeJ_T0010210.1 MGP_C3HHeJ_G0008343.1 mouse_genomes_project 19 6022502 6022578 - Mir5136 miRNA miRNA MGP_C3HHeJ_T0010212.1 MGP_C3HHeJ_G0008345.1 mouse_genomes_project 19 7165271 7165336 + Mir6993 miRNA miRNA MGP_C3HHeJ_T0010218.1 MGP_C3HHeJ_G0008351.1 mouse_genomes_project 19 20849288 20849409 + Mir1192 miRNA miRNA MGP_C3HHeJ_T0010217.1 MGP_C3HHeJ_G0008350.1 mouse_genomes_project 19 20418288 20418356 + Mir204 miRNA miRNA MGP_C3HHeJ_T0100426.1 MGP_C3HHeJ_G0038620.1 mouse_genomes_project 19 60442584 60442703 - Gm26158 snoRNA snoRNA MGP_C3HHeJ_T0051599.1 MGP_C3HHeJ_G0024908.1 mouse_genomes_project 19 43834664 43891245 + MGP_C3HHeJ_P0051599 Fam178a protein_coding protein_coding MGP_C3HHeJ_T0051600.1 MGP_C3HHeJ_G0024908.1 mouse_genomes_project 19 43848112 43891247 + MGP_C3HHeJ_P0051600 Fam178a protein_coding unknown_likely_coding MGP_C3HHeJ_T0100407.1 MGP_C3HHeJ_G0038601.1 mouse_genomes_project 19 8706906 8706956 - Gm24599 snoRNA snoRNA MGP_C3HHeJ_T0050906.1 MGP_C3HHeJ_G0024633.1 mouse_genomes_project 19 9258985 9259930 - MGP_C3HHeJ_P0050906 Olfr1428 protein_coding protein_coding MGP_C3HHeJ_T0050737.1 MGP_C3HHeJ_G0024568.1 mouse_genomes_project 19 6944940 6966118 - MGP_C3HHeJ_P0050737 Best1 protein_coding protein_coding MGP_C3HHeJ_T0050738.1 MGP_C3HHeJ_G0024568.1 mouse_genomes_project 19 6950297 6954004 - Best1 protein_coding processed_transcript MGP_C3HHeJ_T0051202.1 MGP_C3HHeJ_G0024765.1 mouse_genomes_project 19 28248067 28255830 + MGP_C3HHeJ_P0051202 Mbl2 protein_coding protein_coding MGP_C3HHeJ_T0050187.1 MGP_C3HHeJ_G0024415.1 mouse_genomes_project 19 1774990 1795833 - MGP_C3HHeJ_P0050187 Dpp3 protein_coding protein_coding MGP_C3HHeJ_T0006976.1 MGP_C3HHeJ_G0005726.1 mouse_genomes_project 19 2758935 2779698 - Neat1 lincRNA lincRNA MGP_C3HHeJ_T0006977.1 MGP_C3HHeJ_G0005726.1 mouse_genomes_project 19 2776526 2779696 - Neat1 lincRNA lincRNA MGP_C3HHeJ_T0006978.1 MGP_C3HHeJ_G0005726.1 mouse_genomes_project 19 2777900 2779479 - Neat1 lincRNA lincRNA MGP_C3HHeJ_T0050240.1 MGP_C3HHeJ_G0024441.1 mouse_genomes_project 19 2358909 2359518 - MGP_C3HHeJ_P0050240 Ccdc85b protein_coding protein_coding MGP_C3HHeJ_T0050968.1 MGP_C3HHeJ_G0024680.1 mouse_genomes_project 19 11012328 11013288 + MGP_C3HHeJ_P0050968 Olfr1491 protein_coding protein_coding MGP_C3HHeJ_T0051749.1 MGP_C3HHeJ_G0024960.1 mouse_genomes_project 19 46349586 46562729 - MGP_C3HHeJ_P0051749 Sh3pxd2a protein_coding protein_coding MGP_C3HHeJ_T0051750.1 MGP_C3HHeJ_G0024960.1 mouse_genomes_project 19 46349586 46562729 - MGP_C3HHeJ_P0051750 Sh3pxd2a protein_coding protein_coding MGP_C3HHeJ_T0000984.1 MGP_C3HHeJ_G0000921.1 mouse_genomes_project 19 2734830 2735283 + TEC TEC MGP_C3HHeJ_T0050784.1 MGP_C3HHeJ_G0024585.1 mouse_genomes_project 19 7575692 7587750 - MGP_C3HHeJ_P0050784 Tkfc protein_coding protein_coding MGP_C3HHeJ_T0051343.1 MGP_C3HHeJ_G0024821.1 mouse_genomes_project 19 36608880 36617484 - MGP_C3HHeJ_P0051343 Rbp4 protein_coding protein_coding MGP_C3HHeJ_T0051344.1 MGP_C3HHeJ_G0024821.1 mouse_genomes_project 19 36608880 36616973 - MGP_C3HHeJ_P0051344 Rbp4 protein_coding protein_coding MGP_C3HHeJ_T0050611.1 MGP_C3HHeJ_G0024530.1 mouse_genomes_project 19 4666784 4668991 + Hrasls5 protein_coding retained_intron MGP_C3HHeJ_T0050612.1 MGP_C3HHeJ_G0024530.1 mouse_genomes_project 19 4666798 4693608 + MGP_C3HHeJ_P0050612 Hrasls5 protein_coding protein_coding MGP_C3HHeJ_T0050613.1 MGP_C3HHeJ_G0024530.1 mouse_genomes_project 19 4666848 4694007 + MGP_C3HHeJ_P0050613 Hrasls5 protein_coding protein_coding MGP_C3HHeJ_T0006982.1 MGP_C3HHeJ_G0005730.1 mouse_genomes_project 19 8045230 8047719 - Gm28347 lincRNA lincRNA MGP_C3HHeJ_T0051952.1 MGP_C3HHeJ_G0025018.1 mouse_genomes_project 19 58878616 58913771 + MGP_C3HHeJ_P0051952 Slc18a2 protein_coding protein_coding MGP_C3HHeJ_T0051720.1 MGP_C3HHeJ_G0024944.1 mouse_genomes_project 19 45634677 45697328 + MGP_C3HHeJ_P0051720 Wbp1l protein_coding protein_coding MGP_C3HHeJ_T0051721.1 MGP_C3HHeJ_G0024944.1 mouse_genomes_project 19 45634706 45697324 + MGP_C3HHeJ_P0051721 Wbp1l protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051722.1 MGP_C3HHeJ_G0024944.1 mouse_genomes_project 19 45634707 45697321 + MGP_C3HHeJ_P0051722 Wbp1l protein_coding protein_coding MGP_C3HHeJ_T0051723.1 MGP_C3HHeJ_G0024944.1 mouse_genomes_project 19 45634717 45684705 + Wbp1l protein_coding processed_transcript MGP_C3HHeJ_T0051724.1 MGP_C3HHeJ_G0024944.1 mouse_genomes_project 19 45662893 45692467 + Wbp1l protein_coding processed_transcript MGP_C3HHeJ_T0051725.1 MGP_C3HHeJ_G0024944.1 mouse_genomes_project 19 45662893 45697324 + MGP_C3HHeJ_P0051725 Wbp1l protein_coding protein_coding MGP_C3HHeJ_T0051937.1 MGP_C3HHeJ_G0025008.1 mouse_genomes_project 19 58091009 58131605 + MGP_C3HHeJ_P0051937 Ccdc172 protein_coding protein_coding MGP_C3HHeJ_T0011380.1 MGP_C3HHeJ_G0009513.1 mouse_genomes_project 19 14497805 14498212 - Gm27970 misc_RNA misc_RNA MGP_C3HHeJ_T0051071.1 MGP_C3HHeJ_G0024728.1 mouse_genomes_project 19 22445430 22451008 + MGP_C3HHeJ_P0051071 Tmem252 protein_coding protein_coding MGP_C3HHeJ_T0097886.1 MGP_C3HHeJ_G0036098.1 mouse_genomes_project 19 11221979 11223935 + pseudogene pseudogene MGP_C3HHeJ_T0051067.1 MGP_C3HHeJ_G0024726.1 mouse_genomes_project 19 22006684 22032960 - MGP_C3HHeJ_P0051067 Fxn protein_coding protein_coding MGP_C3HHeJ_T0051068.1 MGP_C3HHeJ_G0024726.1 mouse_genomes_project 19 22006732 22032923 - MGP_C3HHeJ_P0051068 Fxn protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051069.1 MGP_C3HHeJ_G0024726.1 mouse_genomes_project 19 22008440 22028834 - Fxn protein_coding retained_intron MGP_C3HHeJ_T0051274.1 MGP_C3HHeJ_G0024798.1 mouse_genomes_project 19 32989453 33070084 - MGP_C3HHeJ_P0051274 Slc16a12 protein_coding protein_coding MGP_C3HHeJ_T0051040.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19216355 19288960 - MGP_C3HHeJ_P0051040 1110059E24Rik protein_coding protein_coding MGP_C3HHeJ_T0051041.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19232724 19288940 - MGP_C3HHeJ_P0051041 1110059E24Rik protein_coding protein_coding MGP_C3HHeJ_T0051042.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19233115 19289032 - MGP_C3HHeJ_P0051042 1110059E24Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051043.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19233584 19267104 - MGP_C3HHeJ_P0051043 1110059E24Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051044.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19233739 19289149 - MGP_C3HHeJ_P0051044 1110059E24Rik protein_coding protein_coding MGP_C3HHeJ_T0051045.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19234228 19239311 - 1110059E24Rik protein_coding processed_transcript MGP_C3HHeJ_T0051046.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19234240 19288842 - MGP_C3HHeJ_P0051046 1110059E24Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051047.1 MGP_C3HHeJ_G0024713.1 mouse_genomes_project 19 19250186 19289025 - 1110059E24Rik protein_coding retained_intron MGP_C3HHeJ_T0050802.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7876511 7891102 - MGP_C3HHeJ_P0050802 Tmem109 protein_coding protein_coding MGP_C3HHeJ_T0050803.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7877708 7886271 - MGP_C3HHeJ_P0050803 Tmem109 protein_coding protein_coding MGP_C3HHeJ_T0050804.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7877992 7880596 - Tmem109 protein_coding retained_intron MGP_C3HHeJ_T0050805.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7878047 7891102 - MGP_C3HHeJ_P0050805 Tmem109 protein_coding protein_coding MGP_C3HHeJ_T0050806.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7879786 7890812 - Tmem109 protein_coding retained_intron MGP_C3HHeJ_T0050807.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7880100 7890832 - MGP_C3HHeJ_P0050807 Tmem109 protein_coding protein_coding MGP_C3HHeJ_T0050808.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7880118 7890799 - MGP_C3HHeJ_P0050808 Tmem109 protein_coding protein_coding MGP_C3HHeJ_T0050809.1 MGP_C3HHeJ_G0024594.1 mouse_genomes_project 19 7886402 7890799 - Tmem109 protein_coding processed_transcript MGP_C3HHeJ_T0017434.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946265 954036 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017435.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946290 953478 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017436.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946290 953195 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017437.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946290 953478 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017438.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946290 953478 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017439.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946290 953477 + Tmem134 processed_transcript retained_intron MGP_C3HHeJ_T0017440.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946291 954036 + Tmem134 processed_transcript retained_intron MGP_C3HHeJ_T0017441.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946291 954058 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017442.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946291 954056 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017443.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946306 953478 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017444.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946310 953486 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017445.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946318 953481 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017446.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946320 953478 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017447.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946320 948070 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017448.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 946360 953483 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0017449.1 MGP_C3HHeJ_G0015136.1 mouse_genomes_project 19 947902 953008 + Tmem134 processed_transcript processed_transcript MGP_C3HHeJ_T0050197.1 MGP_C3HHeJ_G0024419.1 mouse_genomes_project 19 1900157 1908125 + MGP_C3HHeJ_P0050197 Slc29a2 protein_coding protein_coding MGP_C3HHeJ_T0007016.1 MGP_C3HHeJ_G0005755.1 mouse_genomes_project 19 44273592 44274119 + Gm29594 lincRNA lincRNA MGP_C3HHeJ_T0051062.1 MGP_C3HHeJ_G0024721.1 mouse_genomes_project 19 21410829 21444553 + MGP_C3HHeJ_P0051062 Ptar1 protein_coding protein_coding MGP_C3HHeJ_T0003800.1 MGP_C3HHeJ_G0003399.1 mouse_genomes_project 19 43731217 43738697 - 1700039E22Rik antisense antisense MGP_C3HHeJ_T0050225.1 MGP_C3HHeJ_G0024434.1 mouse_genomes_project 19 2265483 2267488 - MGP_C3HHeJ_P0050225 Banf1 protein_coding protein_coding MGP_C3HHeJ_T0050226.1 MGP_C3HHeJ_G0024434.1 mouse_genomes_project 19 2265483 2267190 - MGP_C3HHeJ_P0050226 Banf1 protein_coding protein_coding MGP_C3HHeJ_T0051872.1 MGP_C3HHeJ_G0024994.1 mouse_genomes_project 19 55880341 55924428 + MGP_C3HHeJ_P0051872 Casp7 protein_coding protein_coding MGP_C3HHeJ_T0011383.1 MGP_C3HHeJ_G0009516.1 mouse_genomes_project 19 28284491 28284772 + Gm24883 misc_RNA misc_RNA MGP_C3HHeJ_T0003788.1 MGP_C3HHeJ_G0003392.1 mouse_genomes_project 19 9906100 9921218 - Gm15962 antisense antisense MGP_C3HHeJ_T0003789.1 MGP_C3HHeJ_G0003392.1 mouse_genomes_project 19 9915809 9921262 - Gm15962 antisense antisense MGP_C3HHeJ_T0051269.1 MGP_C3HHeJ_G0024795.1 mouse_genomes_project 19 32928059 32930274 - MGP_C3HHeJ_P0051269 Ifit1bl1 protein_coding protein_coding MGP_C3HHeJ_T0051270.1 MGP_C3HHeJ_G0024795.1 mouse_genomes_project 19 32928062 32930195 - MGP_C3HHeJ_P0051270 Ifit1bl1 protein_coding protein_coding MGP_C3HHeJ_T0013249.1 MGP_C3HHeJ_G0011353.1 mouse_genomes_project 19 26714660 26714930 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0049976.1 MGP_C3HHeJ_G0024362.1 mouse_genomes_project 19 478258 487807 + MGP_C3HHeJ_P0049976 1810055G02Rik protein_coding protein_coding MGP_C3HHeJ_T0010213.1 MGP_C3HHeJ_G0008346.1 mouse_genomes_project 19 9033559 9033632 + Mir6994 miRNA miRNA MGP_C3HHeJ_T0050633.1 MGP_C3HHeJ_G0024538.1 mouse_genomes_project 19 5856926 5861743 + MGP_C3HHeJ_P0050633 Wdr74 protein_coding protein_coding MGP_C3HHeJ_T0050598.1 MGP_C3HHeJ_G0024526.1 mouse_genomes_project 19 4470723 4530729 - MGP_C3HHeJ_P0050598 Rtn3 protein_coding protein_coding MGP_C3HHeJ_T0050599.1 MGP_C3HHeJ_G0024526.1 mouse_genomes_project 19 4470723 4530729 - MGP_C3HHeJ_P0050599 Rtn3 protein_coding protein_coding MGP_C3HHeJ_T0050600.1 MGP_C3HHeJ_G0024526.1 mouse_genomes_project 19 4470723 4530721 - MGP_C3HHeJ_P0050600 Rtn3 protein_coding protein_coding MGP_C3HHeJ_T0050601.1 MGP_C3HHeJ_G0024526.1 mouse_genomes_project 19 4471850 4530659 - MGP_C3HHeJ_P0050601 Rtn3 protein_coding protein_coding MGP_C3HHeJ_T0050533.1 MGP_C3HHeJ_G0024505.1 mouse_genomes_project 19 3926040 3928995 - MGP_C3HHeJ_P0050533 Tex40 protein_coding protein_coding MGP_C3HHeJ_T0050297.1 MGP_C3HHeJ_G0024456.1 mouse_genomes_project 19 2612942 2626677 + MGP_C3HHeJ_P0050297 Map3k11 protein_coding protein_coding MGP_C3HHeJ_T0050945.1 MGP_C3HHeJ_G0024657.1 mouse_genomes_project 19 10095350 10096675 - MGP_C3HHeJ_P0050945 Olfr1446 protein_coding protein_coding MGP_C3HHeJ_T0050722.1 MGP_C3HHeJ_G0024560.1 mouse_genomes_project 19 6093678 6107118 + MGP_C3HHeJ_P0050722 Tut1 protein_coding protein_coding MGP_C3HHeJ_T0050952.1 MGP_C3HHeJ_G0024664.1 mouse_genomes_project 19 10269453 10270377 + MGP_C3HHeJ_P0050952 Olfr1454 protein_coding protein_coding MGP_C3HHeJ_T0100416.1 MGP_C3HHeJ_G0038610.1 mouse_genomes_project 19 25625223 25625355 - Gm24782 snoRNA snoRNA MGP_C3HHeJ_T0050943.1 MGP_C3HHeJ_G0024655.1 mouse_genomes_project 19 10068292 10069322 + MGP_C3HHeJ_P0050943 Olfr1444 protein_coding protein_coding MGP_C3HHeJ_T0098385.1 MGP_C3HHeJ_G0036591.1 mouse_genomes_project 19 31994125 32068759 - sense_intronic sense_intronic MGP_C3HHeJ_T0013236.1 MGP_C3HHeJ_G0011340.1 mouse_genomes_project 19 9433619 9433775 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0007001.1 MGP_C3HHeJ_G0005743.1 mouse_genomes_project 19 30496517 30498485 + 2700046G09Rik lincRNA lincRNA MGP_C3HHeJ_T0099170.1 MGP_C3HHeJ_G0037364.1 mouse_genomes_project 19 60849912 60850028 - Gm22365 snRNA snRNA MGP_C3HHeJ_T0050789.1 MGP_C3HHeJ_G0024589.1 mouse_genomes_project 19 7710071 7721416 + MGP_C3HHeJ_P0050789 Vps37c protein_coding unknown_likely_coding MGP_C3HHeJ_T0099162.1 MGP_C3HHeJ_G0037356.1 mouse_genomes_project 19 40737816 40737915 + Gm23113 snRNA snRNA MGP_C3HHeJ_T0050270.1 MGP_C3HHeJ_G0024447.1 mouse_genomes_project 19 2401343 2418768 - MGP_C3HHeJ_P0050270 Snx32 protein_coding protein_coding MGP_C3HHeJ_T0051584.1 MGP_C3HHeJ_G0024904.1 mouse_genomes_project 19 43437760 43446928 - MGP_C3HHeJ_P0051584 Gm20538 protein_coding protein_coding MGP_C3HHeJ_T0050301.1 MGP_C3HHeJ_G0024459.1 mouse_genomes_project 19 2651886 2653453 - MGP_C3HHeJ_P0050301 Fam89b protein_coding protein_coding MGP_C3HHeJ_T0050302.1 MGP_C3HHeJ_G0024459.1 mouse_genomes_project 19 2651886 2653451 - MGP_C3HHeJ_P0050302 Fam89b protein_coding protein_coding MGP_C3HHeJ_T0050303.1 MGP_C3HHeJ_G0024459.1 mouse_genomes_project 19 2651886 2653433 - MGP_C3HHeJ_P0050303 Fam89b protein_coding protein_coding MGP_C3HHeJ_T0051747.1 MGP_C3HHeJ_G0024959.1 mouse_genomes_project 19 46263857 46347873 + MGP_C3HHeJ_P0051747 Neurl1a protein_coding protein_coding MGP_C3HHeJ_T0051748.1 MGP_C3HHeJ_G0024959.1 mouse_genomes_project 19 46316335 46347873 + MGP_C3HHeJ_P0051748 Neurl1a protein_coding protein_coding MGP_C3HHeJ_T0050202.1 MGP_C3HHeJ_G0024423.1 mouse_genomes_project 19 1944470 1947030 + MGP_C3HHeJ_P0050202 Cd248 protein_coding protein_coding MGP_C3HHeJ_T0007013.1 MGP_C3HHeJ_G0005753.1 mouse_genomes_project 19 44256221 44266726 - Gm29595 lincRNA lincRNA MGP_C3HHeJ_T0007014.1 MGP_C3HHeJ_G0005753.1 mouse_genomes_project 19 44256230 44258800 - Gm29595 lincRNA lincRNA MGP_C3HHeJ_T0007032.1 MGP_C3HHeJ_G0005766.1 mouse_genomes_project 19 59124696 59194545 + 2700089I24Rik lincRNA lincRNA MGP_C3HHeJ_T0101868.1 MGP_C3HHeJ_G0039833.1 mouse_genomes_project 19 32127721 32132238 - unprocessed_pseudogene unprocessed_pseudogene MGP_C3HHeJ_T0050851.1 MGP_C3HHeJ_G0024609.1 mouse_genomes_project 19 8313751 8329078 - MGP_C3HHeJ_P0050851 Ms4a14 protein_coding protein_coding MGP_C3HHeJ_T0050304.1 MGP_C3HHeJ_G0024460.1 mouse_genomes_project 19 2651887 2655512 - MGP_C3HHeJ_P0050304 Sssca1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050305.1 MGP_C3HHeJ_G0024460.1 mouse_genomes_project 19 2654101 2655520 - MGP_C3HHeJ_P0050305 Sssca1 protein_coding protein_coding MGP_C3HHeJ_T0050306.1 MGP_C3HHeJ_G0024460.1 mouse_genomes_project 19 2654105 2655459 - Sssca1 protein_coding retained_intron MGP_C3HHeJ_T0050307.1 MGP_C3HHeJ_G0024460.1 mouse_genomes_project 19 2654105 2655531 - MGP_C3HHeJ_P0050307 Sssca1 protein_coding protein_coding MGP_C3HHeJ_T0050308.1 MGP_C3HHeJ_G0024460.1 mouse_genomes_project 19 2654209 2655274 - MGP_C3HHeJ_P0050308 Sssca1 protein_coding protein_coding MGP_C3HHeJ_T0050309.1 MGP_C3HHeJ_G0024460.1 mouse_genomes_project 19 2654690 2655498 - Sssca1 protein_coding retained_intron MGP_C3HHeJ_T0013245.1 MGP_C3HHeJ_G0011349.1 mouse_genomes_project 19 22464384 22465374 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0011378.1 MGP_C3HHeJ_G0009511.1 mouse_genomes_project 19 2779135 2779257 - Gm28006 misc_RNA misc_RNA MGP_C3HHeJ_T0100400.1 MGP_C3HHeJ_G0038594.1 mouse_genomes_project 19 5845579 5845651 + Gm24452 snoRNA snoRNA MGP_C3HHeJ_T0050361.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3035747 3048244 - MGP_C3HHeJ_P0050361 Vps51 protein_coding protein_coding MGP_C3HHeJ_T0050362.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3035895 3037225 - Vps51 protein_coding retained_intron MGP_C3HHeJ_T0050363.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3035899 3045131 - MGP_C3HHeJ_P0050363 Vps51 protein_coding protein_coding MGP_C3HHeJ_T0050364.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3035956 3037056 - Vps51 protein_coding retained_intron MGP_C3HHeJ_T0050365.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3036122 3036977 - MGP_C3HHeJ_P0050365 Vps51 protein_coding protein_coding MGP_C3HHeJ_T0050366.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3036654 3037519 - Vps51 protein_coding retained_intron MGP_C3HHeJ_T0050367.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3036773 3037604 - Vps51 protein_coding retained_intron MGP_C3HHeJ_T0050368.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3037986 3045137 - Vps51 protein_coding retained_intron MGP_C3HHeJ_T0050369.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3039322 3044802 - Vps51 protein_coding retained_intron MGP_C3HHeJ_T0050370.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3039387 3045132 - MGP_C3HHeJ_P0050370 Vps51 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050371.1 MGP_C3HHeJ_G0024477.1 mouse_genomes_project 19 3043836 3045134 - MGP_C3HHeJ_P0050371 Vps51 protein_coding protein_coding MGP_C3HHeJ_T0051550.1 MGP_C3HHeJ_G0024892.1 mouse_genomes_project 19 42861812 42887282 - MGP_C3HHeJ_P0051550 Cyp2c44 protein_coding protein_coding MGP_C3HHeJ_T0050900.1 MGP_C3HHeJ_G0024627.1 mouse_genomes_project 19 8977807 8978967 - MGP_C3HHeJ_P0050900 Olfr1419 protein_coding protein_coding MGP_C3HHeJ_T0010240.1 MGP_C3HHeJ_G0008373.1 mouse_genomes_project 19 49316620 49316745 + Gm27749 miRNA miRNA MGP_C3HHeJ_T0013232.1 MGP_C3HHeJ_G0011336.1 mouse_genomes_project 19 6521698 6524151 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0006980.1 MGP_C3HHeJ_G0005728.1 mouse_genomes_project 19 3641693 3643179 + Gm14968 lincRNA lincRNA MGP_C3HHeJ_T0050375.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3048681 3052858 - MGP_C3HHeJ_P0050375 Zfpl1 protein_coding protein_coding MGP_C3HHeJ_T0050376.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3048684 3050746 - Zfpl1 protein_coding retained_intron MGP_C3HHeJ_T0050377.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3049087 3052830 - MGP_C3HHeJ_P0050377 Zfpl1 protein_coding protein_coding MGP_C3HHeJ_T0050378.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3049779 3052608 - MGP_C3HHeJ_P0050378 Zfpl1 protein_coding protein_coding MGP_C3HHeJ_T0050379.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3050109 3052809 - Zfpl1 protein_coding retained_intron MGP_C3HHeJ_T0050380.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3050129 3052819 - MGP_C3HHeJ_P0050380 Zfpl1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050381.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3050170 3052222 - Zfpl1 protein_coding retained_intron MGP_C3HHeJ_T0050382.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3050175 3052859 - MGP_C3HHeJ_P0050382 Zfpl1 protein_coding protein_coding MGP_C3HHeJ_T0050383.1 MGP_C3HHeJ_G0024480.1 mouse_genomes_project 19 3050520 3052842 - MGP_C3HHeJ_P0050383 Zfpl1 protein_coding protein_coding MGP_C3HHeJ_T0051551.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42892978 42929464 - MGP_C3HHeJ_P0051551 Erlin1 protein_coding protein_coding MGP_C3HHeJ_T0051552.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42892978 42929713 - MGP_C3HHeJ_P0051552 Erlin1 protein_coding protein_coding MGP_C3HHeJ_T0051553.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42892978 42929723 - MGP_C3HHeJ_P0051553 Erlin1 protein_coding protein_coding MGP_C3HHeJ_T0051554.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42915536 42929694 - MGP_C3HHeJ_P0051554 Erlin1 protein_coding protein_coding MGP_C3HHeJ_T0051555.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42919105 42929335 - MGP_C3HHeJ_P0051555 Erlin1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051556.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42919107 42927624 - MGP_C3HHeJ_P0051556 Erlin1 protein_coding protein_coding MGP_C3HHeJ_T0051557.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42926013 42929682 - Erlin1 protein_coding retained_intron MGP_C3HHeJ_T0051558.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42927413 42929634 - Erlin1 protein_coding retained_intron MGP_C3HHeJ_T0051559.1 MGP_C3HHeJ_G0024893.1 mouse_genomes_project 19 42929255 42929628 - MGP_C3HHeJ_P0051559 Erlin1 protein_coding protein_coding MGP_C3HHeJ_T0010206.1 MGP_C3HHeJ_G0008339.1 mouse_genomes_project 19 3829839 3829898 - Mir5046 miRNA miRNA MGP_C3HHeJ_T0010242.1 MGP_C3HHeJ_G0008375.1 mouse_genomes_project 19 54618346 54618403 + Mir6715 miRNA miRNA MGP_C3HHeJ_T0051807.1 MGP_C3HHeJ_G0024975.1 mouse_genomes_project 19 52621167 52691635 + MGP_C3HHeJ_P0051807 Mxi1 protein_coding protein_coding MGP_C3HHeJ_T0051808.1 MGP_C3HHeJ_G0024975.1 mouse_genomes_project 19 52621436 52689120 + MGP_C3HHeJ_P0051808 Mxi1 protein_coding protein_coding MGP_C3HHeJ_T0007020.1 MGP_C3HHeJ_G0005757.1 mouse_genomes_project 19 44980534 44996645 + 4930505N22Rik lincRNA lincRNA MGP_C3HHeJ_T0050347.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3030710 3035709 - MGP_C3HHeJ_P0050347 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050348.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3030710 3035748 - MGP_C3HHeJ_P0050348 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050349.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3030711 3035748 - MGP_C3HHeJ_P0050349 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050350.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3030790 3035709 - MGP_C3HHeJ_P0050350 Tm7sf2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050351.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3030867 3035714 - MGP_C3HHeJ_P0050351 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050352.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3031711 3035691 - MGP_C3HHeJ_P0050352 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050353.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3031982 3035714 - MGP_C3HHeJ_P0050353 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050354.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3033430 3035682 - Tm7sf2 protein_coding retained_intron MGP_C3HHeJ_T0050355.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3034032 3035756 - Tm7sf2 protein_coding retained_intron MGP_C3HHeJ_T0050356.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3034049 3035773 - Tm7sf2 protein_coding retained_intron MGP_C3HHeJ_T0050357.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3034088 3034998 - Tm7sf2 protein_coding retained_intron MGP_C3HHeJ_T0050358.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3034090 3035761 - MGP_C3HHeJ_P0050358 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0050359.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3034482 3035467 - Tm7sf2 protein_coding retained_intron MGP_C3HHeJ_T0050360.1 MGP_C3HHeJ_G0024476.1 mouse_genomes_project 19 3035068 3036279 - MGP_C3HHeJ_P0050360 Tm7sf2 protein_coding protein_coding MGP_C3HHeJ_T0100425.1 MGP_C3HHeJ_G0038619.1 mouse_genomes_project 19 60441398 60441530 - Snora19 snoRNA snoRNA MGP_C3HHeJ_T0051180.1 MGP_C3HHeJ_G0024758.1 mouse_genomes_project 19 27691291 27701689 + MGP_C3HHeJ_P0051180 Mlana protein_coding protein_coding MGP_C3HHeJ_T0050938.1 MGP_C3HHeJ_G0024652.1 mouse_genomes_project 19 9966065 10000580 - MGP_C3HHeJ_P0050938 Zfp91 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050940.1 MGP_C3HHeJ_G0024652.1 mouse_genomes_project 19 9969426 10000580 - MGP_C3HHeJ_P0050940 Zfp91 protein_coding protein_coding MGP_C3HHeJ_T0050941.1 MGP_C3HHeJ_G0024652.1 mouse_genomes_project 19 9973911 9994879 - Zfp91 protein_coding retained_intron MGP_C3HHeJ_T0013250.1 MGP_C3HHeJ_G0011354.1 mouse_genomes_project 19 26770132 26770929 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0100404.1 MGP_C3HHeJ_G0038598.1 mouse_genomes_project 19 5846642 5846709 + Gm23246 snoRNA snoRNA MGP_C3HHeJ_T0007004.1 MGP_C3HHeJ_G0005745.1 mouse_genomes_project 19 33391446 33395482 - Gm5248 lincRNA lincRNA MGP_C3HHeJ_T0051013.1 MGP_C3HHeJ_G0024702.1 mouse_genomes_project 19 16181814 16216781 + MGP_C3HHeJ_P0051013 Carnmt1 protein_coding protein_coding MGP_C3HHeJ_T0051781.1 MGP_C3HHeJ_G0024967.1 mouse_genomes_project 19 46970559 46991330 + MGP_C3HHeJ_P0051781 Gsto2 protein_coding protein_coding MGP_C3HHeJ_T0051782.1 MGP_C3HHeJ_G0024967.1 mouse_genomes_project 19 46970781 46991330 + MGP_C3HHeJ_P0051782 Gsto2 protein_coding protein_coding MGP_C3HHeJ_T0051783.1 MGP_C3HHeJ_G0024967.1 mouse_genomes_project 19 46975274 46989712 + MGP_C3HHeJ_P0051783 Gsto2 protein_coding protein_coding MGP_C3HHeJ_T0050686.1 MGP_C3HHeJ_G0024547.1 mouse_genomes_project 19 5961446 5963754 - MGP_C3HHeJ_P0050686 Gng3 protein_coding protein_coding MGP_C3HHeJ_T0051645.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44761297 44763752 - MGP_C3HHeJ_P0051645 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051646.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44761798 44790888 - Kcnip2 protein_coding retained_intron MGP_C3HHeJ_T0051647.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44761798 44790927 - MGP_C3HHeJ_P0051647 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051648.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44761798 44790888 - MGP_C3HHeJ_P0051648 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051649.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44762801 44786505 - MGP_C3HHeJ_P0051649 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051650.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44762900 44790891 - MGP_C3HHeJ_P0051650 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051651.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44763122 44790699 - MGP_C3HHeJ_P0051651 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051652.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44763122 44765939 - MGP_C3HHeJ_P0051652 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051653.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44763443 44790669 - MGP_C3HHeJ_P0051653 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051654.1 MGP_C3HHeJ_G0024925.1 mouse_genomes_project 19 44764592 44767279 - MGP_C3HHeJ_P0051654 Kcnip2 protein_coding protein_coding MGP_C3HHeJ_T0051966.1 MGP_C3HHeJ_G0025026.1 mouse_genomes_project 19 60427335 60457746 - MGP_C3HHeJ_P0051966 Eif3a protein_coding protein_coding MGP_C3HHeJ_T0050372.1 MGP_C3HHeJ_G0024478.1 mouse_genomes_project 19 3044878 3050171 - MGP_C3HHeJ_P0050372 Gm28374 protein_coding protein_coding MGP_C3HHeJ_T0013235.1 MGP_C3HHeJ_G0011339.1 mouse_genomes_project 19 8802840 8803633 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051070.1 MGP_C3HHeJ_G0024727.1 mouse_genomes_project 19 22048196 22201897 - MGP_C3HHeJ_P0051070 unknown_likely_coding unknown_likely_coding MGP_C3HHeJ_T0050211.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1985330 1996111 - MGP_C3HHeJ_P0050211 Klc2 protein_coding protein_coding MGP_C3HHeJ_T0050212.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1985330 1995851 - MGP_C3HHeJ_P0050212 Klc2 protein_coding protein_coding MGP_C3HHeJ_T0050213.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1985330 1995848 - MGP_C3HHeJ_P0050213 Klc2 protein_coding protein_coding MGP_C3HHeJ_T0050214.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1985332 1995849 - MGP_C3HHeJ_P0050214 Klc2 protein_coding protein_coding MGP_C3HHeJ_T0050215.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1985753 1987081 - Klc2 protein_coding retained_intron MGP_C3HHeJ_T0050216.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1987027 1989049 - Klc2 protein_coding retained_intron MGP_C3HHeJ_T0050217.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1987970 1989588 - Klc2 protein_coding retained_intron MGP_C3HHeJ_T0050218.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1991113 1991614 - Klc2 protein_coding retained_intron MGP_C3HHeJ_T0050219.1 MGP_C3HHeJ_G0024428.1 mouse_genomes_project 19 1991413 1995137 - MGP_C3HHeJ_P0050219 Klc2 protein_coding protein_coding MGP_C3HHeJ_T0051185.1 MGP_C3HHeJ_G0024760.1 mouse_genomes_project 19 27806372 27810947 - MGP_C3HHeJ_P0051185 Ranbp6 protein_coding protein_coding MGP_C3HHeJ_T0017492.1 MGP_C3HHeJ_G0015149.1 mouse_genomes_project 19 25917819 25919316 + Gm20407 processed_transcript processed_transcript MGP_C3HHeJ_T0051250.1 MGP_C3HHeJ_G0024785.1 mouse_genomes_project 19 32407698 32426921 + MGP_C3HHeJ_P0051250 Lipm protein_coding protein_coding MGP_C3HHeJ_T0050320.1 MGP_C3HHeJ_G0024465.1 mouse_genomes_project 19 2828017 2830986 - MGP_C3HHeJ_P0050320 Tigd3 protein_coding protein_coding MGP_C3HHeJ_T0051251.1 MGP_C3HHeJ_G0024786.1 mouse_genomes_project 19 32426782 32455723 - MGP_C3HHeJ_P0051251 Ankrd22 protein_coding protein_coding MGP_C3HHeJ_T0051252.1 MGP_C3HHeJ_G0024786.1 mouse_genomes_project 19 32427158 32449844 - Ankrd22 protein_coding processed_transcript MGP_C3HHeJ_T0051253.1 MGP_C3HHeJ_G0024786.1 mouse_genomes_project 19 32427158 32433043 - Ankrd22 protein_coding processed_transcript MGP_C3HHeJ_T0050713.1 MGP_C3HHeJ_G0024556.1 mouse_genomes_project 19 6057803 6066223 + MGP_C3HHeJ_P0050713 B3gat3 protein_coding protein_coding MGP_C3HHeJ_T0051435.1 MGP_C3HHeJ_G0024852.1 mouse_genomes_project 19 39938940 39993009 - MGP_C3HHeJ_P0051435 Tm9sf3 protein_coding protein_coding MGP_C3HHeJ_T0051172.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27600851 27647282 - MGP_C3HHeJ_P0051172 Ermp1 protein_coding protein_coding MGP_C3HHeJ_T0051173.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27600855 27605318 - Ermp1 protein_coding processed_transcript MGP_C3HHeJ_T0051174.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27603284 27647054 - MGP_C3HHeJ_P0051174 Ermp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051175.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27605489 27644894 - MGP_C3HHeJ_P0051175 Ermp1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051176.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27605704 27606307 - Ermp1 protein_coding retained_intron MGP_C3HHeJ_T0051177.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27626960 27638386 - Ermp1 protein_coding processed_transcript MGP_C3HHeJ_T0051178.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27627907 27647257 - Ermp1 protein_coding retained_intron MGP_C3HHeJ_T0051179.1 MGP_C3HHeJ_G0024757.1 mouse_genomes_project 19 27643576 27647245 - Ermp1 protein_coding retained_intron MGP_C3HHeJ_T0017485.1 MGP_C3HHeJ_G0015145.1 mouse_genomes_project 19 8513333 8601848 - processed_transcript antisense MGP_C3HHeJ_T0017486.1 MGP_C3HHeJ_G0015145.1 mouse_genomes_project 19 8522830 8601849 - processed_transcript antisense MGP_C3HHeJ_T0017487.1 MGP_C3HHeJ_G0015145.1 mouse_genomes_project 19 8522948 8601806 - processed_transcript retained_intron MGP_C3HHeJ_T0011376.1 MGP_C3HHeJ_G0009509.1 mouse_genomes_project 19 2778505 2778657 - Gm27533 misc_RNA misc_RNA MGP_C3HHeJ_T0051115.1 MGP_C3HHeJ_G0024741.1 mouse_genomes_project 19 25308943 25347833 - MGP_C3HHeJ_P0051115 Pum3 protein_coding protein_coding MGP_C3HHeJ_T0051008.1 MGP_C3HHeJ_G0024701.1 mouse_genomes_project 19 16137733 16142182 + Nmrk1 protein_coding retained_intron MGP_C3HHeJ_T0051009.1 MGP_C3HHeJ_G0024701.1 mouse_genomes_project 19 16137733 16158558 + MGP_C3HHeJ_P0051009 Nmrk1 protein_coding protein_coding MGP_C3HHeJ_T0051010.1 MGP_C3HHeJ_G0024701.1 mouse_genomes_project 19 16137733 16157666 + MGP_C3HHeJ_P0051010 Nmrk1 protein_coding protein_coding MGP_C3HHeJ_T0051011.1 MGP_C3HHeJ_G0024701.1 mouse_genomes_project 19 16137742 16146997 + MGP_C3HHeJ_P0051011 Nmrk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051012.1 MGP_C3HHeJ_G0024701.1 mouse_genomes_project 19 16137745 16143089 + Nmrk1 protein_coding retained_intron MGP_C3HHeJ_T0010236.1 MGP_C3HHeJ_G0008369.1 mouse_genomes_project 19 46364308 46364379 - Mir6995 miRNA miRNA MGP_C3HHeJ_T0050153.1 MGP_C3HHeJ_G0024402.1 mouse_genomes_project 19 1481615 1484680 - MGP_C3HHeJ_P0050153 Rce1 protein_coding protein_coding MGP_C3HHeJ_T0051332.1 MGP_C3HHeJ_G0024814.1 mouse_genomes_project 19 35893507 35899077 + MGP_C3HHeJ_P0051332 Hhex protein_coding protein_coding MGP_C3HHeJ_T0050654.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5878229 5892160 + MGP_C3HHeJ_P0050654 Nxf1 protein_coding protein_coding MGP_C3HHeJ_T0050655.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5878263 5893613 + MGP_C3HHeJ_P0050655 Nxf1 protein_coding protein_coding MGP_C3HHeJ_T0050656.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5878275 5888851 + Nxf1 protein_coding processed_transcript MGP_C3HHeJ_T0050657.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5878306 5886529 + MGP_C3HHeJ_P0050657 Nxf1 protein_coding protein_coding MGP_C3HHeJ_T0050658.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5878306 5884977 + MGP_C3HHeJ_P0050658 Nxf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050659.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5886171 5888634 + MGP_C3HHeJ_P0050659 Nxf1 protein_coding protein_coding MGP_C3HHeJ_T0050660.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5886623 5893617 + MGP_C3HHeJ_P0050660 Nxf1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050661.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5887914 5890405 + Nxf1 protein_coding retained_intron MGP_C3HHeJ_T0050662.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5888248 5889125 + Nxf1 protein_coding retained_intron MGP_C3HHeJ_T0050663.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5889872 5892087 + MGP_C3HHeJ_P0050663 Nxf1 protein_coding protein_coding MGP_C3HHeJ_T0050664.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5891329 5892159 + Nxf1 protein_coding processed_transcript MGP_C3HHeJ_T0050665.1 MGP_C3HHeJ_G0024541.1 mouse_genomes_project 19 5891373 5892100 + Nxf1 protein_coding retained_intron MGP_C3HHeJ_T0010200.1 MGP_C3HHeJ_G0008333.1 mouse_genomes_project 19 2086223 2086329 - Gm27468 miRNA miRNA MGP_C3HHeJ_T0050310.1 MGP_C3HHeJ_G0024461.1 mouse_genomes_project 19 2667604 2688666 + MGP_C3HHeJ_P0050310 Ltbp3 protein_coding protein_coding MGP_C3HHeJ_T0051838.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190660 55395360 + MGP_C3HHeJ_P0051838 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051839.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190660 55395360 + MGP_C3HHeJ_P0051839 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051840.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190670 55394935 + MGP_C3HHeJ_P0051840 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051841.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190670 55394958 + MGP_C3HHeJ_P0051841 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051842.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190734 55386345 + MGP_C3HHeJ_P0051842 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051843.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190734 55394421 + MGP_C3HHeJ_P0051843 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051844.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55190899 55393915 + MGP_C3HHeJ_P0051844 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051845.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191058 55373458 + MGP_C3HHeJ_P0051845 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051846.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191059 55373457 + MGP_C3HHeJ_P0051846 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051847.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191059 55373458 + MGP_C3HHeJ_P0051847 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051848.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191083 55371288 + Tcf7l2 protein_coding retained_intron MGP_C3HHeJ_T0051849.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191083 55386342 + MGP_C3HHeJ_P0051849 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051850.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191132 55395360 + MGP_C3HHeJ_P0051850 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051851.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191164 55394937 + MGP_C3HHeJ_P0051851 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051852.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55191268 55393915 + MGP_C3HHeJ_P0051852 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051853.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55353451 55380725 + Tcf7l2 protein_coding processed_transcript MGP_C3HHeJ_T0051854.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55354633 55380063 + MGP_C3HHeJ_P0051854 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051855.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55355609 55394935 + MGP_C3HHeJ_P0051855 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0051856.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55355761 55373372 + Tcf7l2 protein_coding processed_transcript MGP_C3HHeJ_T0051857.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55358412 55380138 + Tcf7l2 protein_coding processed_transcript MGP_C3HHeJ_T0051858.1 MGP_C3HHeJ_G0024991.1 mouse_genomes_project 19 55358656 55380711 + MGP_C3HHeJ_P0051858 Tcf7l2 protein_coding protein_coding MGP_C3HHeJ_T0050634.1 MGP_C3HHeJ_G0024539.1 mouse_genomes_project 19 5861837 5862345 + MGP_C3HHeJ_P0050634 1700092M07Rik protein_coding protein_coding MGP_C3HHeJ_T0050635.1 MGP_C3HHeJ_G0024539.1 mouse_genomes_project 19 5861881 5862344 + 1700092M07Rik protein_coding retained_intron MGP_C3HHeJ_T0051191.1 MGP_C3HHeJ_G0024762.1 mouse_genomes_project 19 28005226 28007457 + MGP_C3HHeJ_P0051191 Trpd52l3 protein_coding protein_coding MGP_C3HHeJ_T0050912.1 MGP_C3HHeJ_G0024639.1 mouse_genomes_project 19 9519743 9521325 - MGP_C3HHeJ_P0050912 Olfr1437 protein_coding protein_coding MGP_C3HHeJ_T0051571.1 MGP_C3HHeJ_G0024897.1 mouse_genomes_project 19 43011954 43054844 - MGP_C3HHeJ_P0051571 Pkd2l1 protein_coding protein_coding MGP_C3HHeJ_T0051572.1 MGP_C3HHeJ_G0024897.1 mouse_genomes_project 19 43011955 43054844 - Pkd2l1 protein_coding retained_intron MGP_C3HHeJ_T0051573.1 MGP_C3HHeJ_G0024897.1 mouse_genomes_project 19 43012824 43057621 - MGP_C3HHeJ_P0051573 Pkd2l1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051596.1 MGP_C3HHeJ_G0024907.1 mouse_genomes_project 19 43659025 43740392 + MGP_C3HHeJ_P0051596 Pax2 protein_coding protein_coding MGP_C3HHeJ_T0051597.1 MGP_C3HHeJ_G0024907.1 mouse_genomes_project 19 43660258 43740412 + MGP_C3HHeJ_P0051597 Pax2 protein_coding protein_coding MGP_C3HHeJ_T0051598.1 MGP_C3HHeJ_G0024907.1 mouse_genomes_project 19 43662867 43721316 + MGP_C3HHeJ_P0051598 Pax2 protein_coding protein_coding MGP_C3HHeJ_T0050914.1 MGP_C3HHeJ_G0024641.1 mouse_genomes_project 19 9585820 9586768 + MGP_C3HHeJ_P0050914 Olfr1440 protein_coding protein_coding MGP_C3HHeJ_T0050457.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347356 3361729 + MGP_C3HHeJ_P0050457 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050458.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347385 3360902 + MGP_C3HHeJ_P0050458 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050459.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347476 3360211 + MGP_C3HHeJ_P0050459 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050460.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347588 3349622 + Sf1 protein_coding retained_intron MGP_C3HHeJ_T0050461.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347588 3360901 + MGP_C3HHeJ_P0050461 Sf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050462.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347588 3360895 + MGP_C3HHeJ_P0050462 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050463.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347629 3352451 + Sf1 protein_coding retained_intron MGP_C3HHeJ_T0050464.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3347860 3355860 + MGP_C3HHeJ_P0050464 Sf1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050465.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3348223 3356286 + MGP_C3HHeJ_P0050465 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050466.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3353785 3355759 + Sf1 protein_coding processed_transcript MGP_C3HHeJ_T0050467.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3354378 3355361 + Sf1 protein_coding retained_intron MGP_C3HHeJ_T0050468.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3356079 3356588 + Sf1 protein_coding retained_intron MGP_C3HHeJ_T0050469.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3357287 3360353 + MGP_C3HHeJ_P0050469 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050470.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3357676 3360211 + MGP_C3HHeJ_P0050470 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0050471.1 MGP_C3HHeJ_G0024495.1 mouse_genomes_project 19 3357795 3359479 + MGP_C3HHeJ_P0050471 Sf1 protein_coding protein_coding MGP_C3HHeJ_T0051236.1 MGP_C3HHeJ_G0024776.1 mouse_genomes_project 19 31285066 31548795 - MGP_C3HHeJ_P0051236 Rnls protein_coding protein_coding MGP_C3HHeJ_T0050175.1 MGP_C3HHeJ_G0024409.1 mouse_genomes_project 19 1690963 1704807 - MGP_C3HHeJ_P0050175 Ccs protein_coding protein_coding MGP_C3HHeJ_T0051105.1 MGP_C3HHeJ_G0024738.1 mouse_genomes_project 19 24789168 24791886 + MGP_C3HHeJ_P0051105 Gm815 protein_coding protein_coding MGP_C3HHeJ_T0051569.1 MGP_C3HHeJ_G0024896.1 mouse_genomes_project 19 43002479 43010736 - MGP_C3HHeJ_P0051569 Bloc1s2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051570.1 MGP_C3HHeJ_G0024896.1 mouse_genomes_project 19 43002504 43010766 - MGP_C3HHeJ_P0051570 Bloc1s2 protein_coding protein_coding MGP_C3HHeJ_T0050535.1 MGP_C3HHeJ_G0024507.1 mouse_genomes_project 19 3944957 3948396 - MGP_C3HHeJ_P0050535 Gpr137 protein_coding protein_coding MGP_C3HHeJ_T0050536.1 MGP_C3HHeJ_G0024507.1 mouse_genomes_project 19 3944958 3948082 - MGP_C3HHeJ_P0050536 Gpr137 protein_coding protein_coding MGP_C3HHeJ_T0050537.1 MGP_C3HHeJ_G0024507.1 mouse_genomes_project 19 3944958 3948368 - MGP_C3HHeJ_P0050537 Gpr137 protein_coding protein_coding MGP_C3HHeJ_T0050538.1 MGP_C3HHeJ_G0024507.1 mouse_genomes_project 19 3944958 3949339 - MGP_C3HHeJ_P0050538 Gpr137 protein_coding protein_coding MGP_C3HHeJ_T0050539.1 MGP_C3HHeJ_G0024507.1 mouse_genomes_project 19 3944958 3948082 - MGP_C3HHeJ_P0050539 Gpr137 protein_coding protein_coding MGP_C3HHeJ_T0051275.1 MGP_C3HHeJ_G0024799.1 mouse_genomes_project 19 33136248 33209915 - MGP_C3HHeJ_P0051275 Pank1 protein_coding protein_coding MGP_C3HHeJ_T0051276.1 MGP_C3HHeJ_G0024799.1 mouse_genomes_project 19 33136249 33208377 - MGP_C3HHeJ_P0051276 Pank1 protein_coding protein_coding MGP_C3HHeJ_T0051232.1 MGP_C3HHeJ_G0024774.1 mouse_genomes_project 19 30794929 30836987 - MGP_C3HHeJ_P0051232 Atad1 protein_coding protein_coding MGP_C3HHeJ_T0050821.1 MGP_C3HHeJ_G0024598.1 mouse_genomes_project 19 7951833 7957685 - Ccdc86 protein_coding processed_transcript MGP_C3HHeJ_T0050822.1 MGP_C3HHeJ_G0024598.1 mouse_genomes_project 19 7951833 7959499 - MGP_C3HHeJ_P0050822 Ccdc86 protein_coding protein_coding MGP_C3HHeJ_T0050823.1 MGP_C3HHeJ_G0024598.1 mouse_genomes_project 19 7955859 7959484 - Ccdc86 protein_coding retained_intron MGP_C3HHeJ_T0050118.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1117413 1139359 - MGP_C3HHeJ_P0050118 Adrbk1 protein_coding protein_coding MGP_C3HHeJ_T0050119.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1117422 1139175 - MGP_C3HHeJ_P0050119 Adrbk1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050120.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1117422 1139100 - MGP_C3HHeJ_P0050120 Adrbk1 protein_coding protein_coding MGP_C3HHeJ_T0050121.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1117423 1139367 - MGP_C3HHeJ_P0050121 Adrbk1 protein_coding protein_coding MGP_C3HHeJ_T0050122.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1119563 1120729 - Adrbk1 protein_coding retained_intron MGP_C3HHeJ_T0050123.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1119721 1120720 - MGP_C3HHeJ_P0050123 Adrbk1 protein_coding protein_coding MGP_C3HHeJ_T0050124.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1119751 1121809 - MGP_C3HHeJ_P0050124 Adrbk1 protein_coding protein_coding MGP_C3HHeJ_T0050125.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1121787 1123137 - Adrbk1 protein_coding retained_intron MGP_C3HHeJ_T0050126.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1122672 1139172 - Adrbk1 protein_coding retained_intron MGP_C3HHeJ_T0050127.1 MGP_C3HHeJ_G0024395.1 mouse_genomes_project 19 1123892 1138349 - MGP_C3HHeJ_P0050127 Adrbk1 protein_coding protein_coding MGP_C3HHeJ_T0050880.1 MGP_C3HHeJ_G0024619.1 mouse_genomes_project 19 8715040 8723198 - MGP_C3HHeJ_P0050880 Ms4a2 protein_coding protein_coding MGP_C3HHeJ_T0050881.1 MGP_C3HHeJ_G0024619.1 mouse_genomes_project 19 8716474 8723233 - MGP_C3HHeJ_P0050881 Ms4a2 protein_coding protein_coding MGP_C3HHeJ_T0050882.1 MGP_C3HHeJ_G0024619.1 mouse_genomes_project 19 8716710 8723157 - MGP_C3HHeJ_P0050882 Ms4a2 protein_coding protein_coding MGP_C3HHeJ_T0050883.1 MGP_C3HHeJ_G0024619.1 mouse_genomes_project 19 8716990 8723173 - MGP_C3HHeJ_P0050883 Ms4a2 protein_coding protein_coding MGP_C3HHeJ_T0050884.1 MGP_C3HHeJ_G0024619.1 mouse_genomes_project 19 8718446 8723202 - Ms4a2 protein_coding processed_transcript MGP_C3HHeJ_T0051451.1 MGP_C3HHeJ_G0024860.1 mouse_genomes_project 19 40620351 40655260 - MGP_C3HHeJ_P0051451 Rrp12 protein_coding protein_coding MGP_C3HHeJ_T0010209.1 MGP_C3HHeJ_G0008342.1 mouse_genomes_project 19 5864090 5864199 + Mir6992 miRNA miRNA MGP_C3HHeJ_T0097884.1 MGP_C3HHeJ_G0036096.1 mouse_genomes_project 19 10225477 10226401 + pseudogene pseudogene MGP_C3HHeJ_T0050919.1 MGP_C3HHeJ_G0024646.1 mouse_genomes_project 19 9759607 9782381 + MGP_C3HHeJ_P0050919 Fam111a protein_coding protein_coding MGP_C3HHeJ_T0050920.1 MGP_C3HHeJ_G0024646.1 mouse_genomes_project 19 9759607 9782389 + MGP_C3HHeJ_P0050920 Fam111a protein_coding protein_coding MGP_C3HHeJ_T0050921.1 MGP_C3HHeJ_G0024646.1 mouse_genomes_project 19 9764932 9782383 + MGP_C3HHeJ_P0050921 Fam111a protein_coding protein_coding MGP_C3HHeJ_T0050341.1 MGP_C3HHeJ_G0024472.1 mouse_genomes_project 19 3019383 3023537 - MGP_C3HHeJ_P0050341 Mrpl49 protein_coding protein_coding MGP_C3HHeJ_T0051339.1 MGP_C3HHeJ_G0024819.1 mouse_genomes_project 19 36544359 36563974 + MGP_C3HHeJ_P0051339 Cep55 protein_coding protein_coding MGP_C3HHeJ_T0051340.1 MGP_C3HHeJ_G0024819.1 mouse_genomes_project 19 36544374 36563047 + MGP_C3HHeJ_P0051340 Cep55 protein_coding protein_coding MGP_C3HHeJ_T0051341.1 MGP_C3HHeJ_G0024819.1 mouse_genomes_project 19 36544376 36563974 + MGP_C3HHeJ_P0051341 Cep55 protein_coding protein_coding MGP_C3HHeJ_T0010229.1 MGP_C3HHeJ_G0008362.1 mouse_genomes_project 19 40322439 40322578 + Mir8091 miRNA miRNA MGP_C3HHeJ_T0051939.1 MGP_C3HHeJ_G0025010.1 mouse_genomes_project 19 58324240 58339452 + MGP_C3HHeJ_P0051939 Pnliprp1 protein_coding protein_coding MGP_C3HHeJ_T0050524.1 MGP_C3HHeJ_G0024503.1 mouse_genomes_project 19 3913505 3914860 + MGP_C3HHeJ_P0050524 Trmt112 protein_coding protein_coding MGP_C3HHeJ_T0050525.1 MGP_C3HHeJ_G0024503.1 mouse_genomes_project 19 3913554 3914839 + MGP_C3HHeJ_P0050525 Trmt112 protein_coding protein_coding MGP_C3HHeJ_T0050526.1 MGP_C3HHeJ_G0024503.1 mouse_genomes_project 19 3913960 3914645 + Trmt112 protein_coding retained_intron MGP_C3HHeJ_T0050527.1 MGP_C3HHeJ_G0024503.1 mouse_genomes_project 19 3913971 3914839 + MGP_C3HHeJ_P0050527 Trmt112 protein_coding protein_coding MGP_C3HHeJ_T0050176.1 MGP_C3HHeJ_G0024410.1 mouse_genomes_project 19 1704850 1708013 + MGP_C3HHeJ_P0050176 Ccdc87 protein_coding protein_coding MGP_C3HHeJ_T0051568.1 MGP_C3HHeJ_G0024895.1 mouse_genomes_project 19 42970179 42997904 - MGP_C3HHeJ_P0051568 Cwf19l1 protein_coding protein_coding MGP_C3HHeJ_T0051192.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28032477 28062738 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0051193.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28032477 28085376 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0051194.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28032477 28097567 + MGP_C3HHeJ_P0051194 Uhrf2 protein_coding protein_coding MGP_C3HHeJ_T0051195.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28032553 28061089 + MGP_C3HHeJ_P0051195 Uhrf2 protein_coding protein_coding MGP_C3HHeJ_T0051196.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28077670 28079398 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0051197.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28082360 28084102 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0051198.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28089544 28091167 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0051199.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28092906 28097567 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0051200.1 MGP_C3HHeJ_G0024763.1 mouse_genomes_project 19 28095805 28096784 + Uhrf2 protein_coding retained_intron MGP_C3HHeJ_T0013225.1 MGP_C3HHeJ_G0011329.1 mouse_genomes_project 19 2316057 2316252 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051412.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39322335 39324112 + Entpd1 protein_coding processed_transcript MGP_C3HHeJ_T0051413.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39322358 39325685 + Entpd1 protein_coding processed_transcript MGP_C3HHeJ_T0051414.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39322366 39456866 + MGP_C3HHeJ_P0051414 Entpd1 protein_coding protein_coding MGP_C3HHeJ_T0051415.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39370491 39458674 + MGP_C3HHeJ_P0051415 Entpd1 protein_coding protein_coding MGP_C3HHeJ_T0051416.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39370520 39440977 + MGP_C3HHeJ_P0051416 Entpd1 protein_coding protein_coding MGP_C3HHeJ_T0051417.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39370565 39456155 + MGP_C3HHeJ_P0051417 Entpd1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051418.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39370920 39425479 + Entpd1 protein_coding processed_transcript MGP_C3HHeJ_T0051419.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39371214 39439048 + Entpd1 protein_coding processed_transcript MGP_C3HHeJ_T0051420.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39394007 39439144 + Entpd1 protein_coding processed_transcript MGP_C3HHeJ_T0051421.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39442000 39456827 + MGP_C3HHeJ_P0051421 Entpd1 protein_coding protein_coding MGP_C3HHeJ_T0051422.1 MGP_C3HHeJ_G0024845.1 mouse_genomes_project 19 39453255 39453937 + Entpd1 protein_coding processed_transcript MGP_C3HHeJ_T0051745.1 MGP_C3HHeJ_G0024957.1 mouse_genomes_project 19 46227057 46232919 - MGP_C3HHeJ_P0051745 Calhm3 protein_coding protein_coding MGP_C3HHeJ_T0051165.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27511816 27599467 + MGP_C3HHeJ_P0051165 Ric1 protein_coding protein_coding MGP_C3HHeJ_T0051166.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27511869 27555523 + MGP_C3HHeJ_P0051166 Ric1 protein_coding protein_coding MGP_C3HHeJ_T0051167.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27511916 27573353 + Ric1 protein_coding retained_intron MGP_C3HHeJ_T0051168.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27522593 27596568 + MGP_C3HHeJ_P0051168 Ric1 protein_coding protein_coding MGP_C3HHeJ_T0051169.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27587199 27597553 + MGP_C3HHeJ_P0051169 Ric1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051170.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27588931 27592265 + Ric1 protein_coding retained_intron MGP_C3HHeJ_T0051171.1 MGP_C3HHeJ_G0024756.1 mouse_genomes_project 19 27589516 27598264 + MGP_C3HHeJ_P0051171 Ric1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050715.1 MGP_C3HHeJ_G0024558.1 mouse_genomes_project 19 6068683 6080723 + MGP_C3HHeJ_P0050715 Eml3 protein_coding protein_coding MGP_C3HHeJ_T0051441.1 MGP_C3HHeJ_G0024857.1 mouse_genomes_project 19 40338552 40495662 - MGP_C3HHeJ_P0051441 Slit1 protein_coding protein_coding MGP_C3HHeJ_T0051442.1 MGP_C3HHeJ_G0024857.1 mouse_genomes_project 19 40338554 40495835 - MGP_C3HHeJ_P0051442 Slit1 protein_coding protein_coding MGP_C3HHeJ_T0051443.1 MGP_C3HHeJ_G0024857.1 mouse_genomes_project 19 40338746 40495662 - MGP_C3HHeJ_P0051443 Slit1 protein_coding protein_coding MGP_C3HHeJ_T0051444.1 MGP_C3HHeJ_G0024857.1 mouse_genomes_project 19 40343476 40348531 - Slit1 protein_coding retained_intron MGP_C3HHeJ_T0051445.1 MGP_C3HHeJ_G0024857.1 mouse_genomes_project 19 40386839 40495656 - MGP_C3HHeJ_P0051445 Slit1 protein_coding protein_coding MGP_C3HHeJ_T0051625.1 MGP_C3HHeJ_G0024920.1 mouse_genomes_project 19 44522112 44546845 + MGP_C3HHeJ_P0051625 Gm17018 protein_coding protein_coding MGP_C3HHeJ_T0051627.1 MGP_C3HHeJ_G0024920.1 mouse_genomes_project 19 44546842 44548329 + Gm17018 protein_coding antisense MGP_C3HHeJ_T0051390.1 MGP_C3HHeJ_G0024841.1 mouse_genomes_project 19 38907104 38970578 - MGP_C3HHeJ_P0051390 Pdlim1 protein_coding protein_coding MGP_C3HHeJ_T0051391.1 MGP_C3HHeJ_G0024841.1 mouse_genomes_project 19 38908286 38909275 - Pdlim1 protein_coding retained_intron MGP_C3HHeJ_T0051392.1 MGP_C3HHeJ_G0024841.1 mouse_genomes_project 19 38908446 38925698 - Pdlim1 protein_coding retained_intron MGP_C3HHeJ_T0051393.1 MGP_C3HHeJ_G0024841.1 mouse_genomes_project 19 38925484 38970816 - MGP_C3HHeJ_P0051393 Pdlim1 protein_coding protein_coding MGP_C3HHeJ_T0051394.1 MGP_C3HHeJ_G0024841.1 mouse_genomes_project 19 38943735 38970578 - Pdlim1 protein_coding retained_intron MGP_C3HHeJ_T0100398.1 MGP_C3HHeJ_G0038592.1 mouse_genomes_project 19 5845041 5845113 + Gm25855 snoRNA snoRNA MGP_C3HHeJ_T0098099.1 MGP_C3HHeJ_G0036311.1 mouse_genomes_project 19 50018268 50018305 + Gm25659 rRNA rRNA MGP_C3HHeJ_T0050049.1 MGP_C3HHeJ_G0024376.1 mouse_genomes_project 19 847646 860681 - MGP_C3HHeJ_P0050049 protein_coding protein_coding MGP_C3HHeJ_T0051456.1 MGP_C3HHeJ_G0024863.1 mouse_genomes_project 19 40694149 40704832 + MGP_C3HHeJ_P0051456 Zdhhc16 protein_coding protein_coding MGP_C3HHeJ_T0051457.1 MGP_C3HHeJ_G0024863.1 mouse_genomes_project 19 40694223 40704840 + MGP_C3HHeJ_P0051457 Zdhhc16 protein_coding unknown_likely_coding MGP_C3HHeJ_T0003770.1 MGP_C3HHeJ_G0003381.1 mouse_genomes_project 19 1666837 1671110 + Gm21844 antisense antisense MGP_C3HHeJ_T0006995.1 MGP_C3HHeJ_G0005740.1 mouse_genomes_project 19 26012071 26012980 + Gm28228 lincRNA lincRNA MGP_C3HHeJ_T0050412.1 MGP_C3HHeJ_G0024490.1 mouse_genomes_project 19 3219932 3239976 + MGP_C3HHeJ_P0050412 Atg2a protein_coding protein_coding MGP_C3HHeJ_T0050413.1 MGP_C3HHeJ_G0024490.1 mouse_genomes_project 19 3223729 3239936 + MGP_C3HHeJ_P0050413 Atg2a protein_coding protein_coding MGP_C3HHeJ_T0050414.1 MGP_C3HHeJ_G0024490.1 mouse_genomes_project 19 3229132 3229940 + Atg2a protein_coding retained_intron MGP_C3HHeJ_T0050415.1 MGP_C3HHeJ_G0024490.1 mouse_genomes_project 19 3234015 3237264 + Atg2a protein_coding retained_intron MGP_C3HHeJ_T0050416.1 MGP_C3HHeJ_G0024490.1 mouse_genomes_project 19 3235985 3237773 + Atg2a protein_coding retained_intron MGP_C3HHeJ_T0050108.1 MGP_C3HHeJ_G0024392.1 mouse_genomes_project 19 1059412 1061143 + MGP_C3HHeJ_P0050108 Pold4 protein_coding protein_coding MGP_C3HHeJ_T0051820.1 MGP_C3HHeJ_G0024981.1 mouse_genomes_project 19 53248543 53287979 + MGP_C3HHeJ_P0051820 Pdcd4 protein_coding protein_coding MGP_C3HHeJ_T0051821.1 MGP_C3HHeJ_G0024981.1 mouse_genomes_project 19 53259676 53287979 + MGP_C3HHeJ_P0051821 Pdcd4 protein_coding protein_coding MGP_C3HHeJ_T0051822.1 MGP_C3HHeJ_G0024981.1 mouse_genomes_project 19 53259676 53287979 + MGP_C3HHeJ_P0051822 Pdcd4 protein_coding protein_coding MGP_C3HHeJ_T0050687.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5961984 5973115 + MGP_C3HHeJ_P0050687 Bscl2 protein_coding protein_coding MGP_C3HHeJ_T0050688.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5962204 5964751 + Bscl2 protein_coding processed_transcript MGP_C3HHeJ_T0050689.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5962246 5973099 + MGP_C3HHeJ_P0050689 Bscl2 protein_coding protein_coding MGP_C3HHeJ_T0050690.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5963835 5973098 + MGP_C3HHeJ_P0050690 Bscl2 protein_coding protein_coding MGP_C3HHeJ_T0050691.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5963880 5973099 + Bscl2 protein_coding retained_intron MGP_C3HHeJ_T0050692.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5963897 5973070 + MGP_C3HHeJ_P0050692 Bscl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050693.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5965026 5973098 + MGP_C3HHeJ_P0050693 Bscl2 protein_coding protein_coding MGP_C3HHeJ_T0050694.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5965042 5973098 + Bscl2 protein_coding retained_intron MGP_C3HHeJ_T0050695.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5965042 5973098 + Bscl2 protein_coding retained_intron MGP_C3HHeJ_T0050696.1 MGP_C3HHeJ_G0024548.1 mouse_genomes_project 19 5970697 5973055 + MGP_C3HHeJ_P0050696 Bscl2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051594.1 MGP_C3HHeJ_G0024906.1 mouse_genomes_project 19 43456528 43457633 + Hif1an protein_coding retained_intron MGP_C3HHeJ_T0051595.1 MGP_C3HHeJ_G0024906.1 mouse_genomes_project 19 43456528 43469984 + MGP_C3HHeJ_P0051595 Hif1an protein_coding protein_coding MGP_C3HHeJ_T0011375.1 MGP_C3HHeJ_G0009508.1 mouse_genomes_project 19 2731889 2731975 - Gm27694 misc_RNA misc_RNA MGP_C3HHeJ_T0050388.1 MGP_C3HHeJ_G0024483.1 mouse_genomes_project 19 3085400 3087983 - MGP_C3HHeJ_P0050388 Sac3d1 protein_coding protein_coding MGP_C3HHeJ_T0051733.1 MGP_C3HHeJ_G0024949.1 mouse_genomes_project 19 45947703 46033663 - MGP_C3HHeJ_P0051733 Nt5c2 protein_coding protein_coding MGP_C3HHeJ_T0051734.1 MGP_C3HHeJ_G0024949.1 mouse_genomes_project 19 45947703 46025804 - MGP_C3HHeJ_P0051734 Nt5c2 protein_coding protein_coding MGP_C3HHeJ_T0051735.1 MGP_C3HHeJ_G0024949.1 mouse_genomes_project 19 45948700 46084897 - MGP_C3HHeJ_P0051735 Nt5c2 protein_coding protein_coding MGP_C3HHeJ_T0051736.1 MGP_C3HHeJ_G0024949.1 mouse_genomes_project 19 45952382 45959395 - MGP_C3HHeJ_P0051736 Nt5c2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051770.1 MGP_C3HHeJ_G0024964.1 mouse_genomes_project 19 46831549 46835304 + MGP_C3HHeJ_P0051770 Sfr1 protein_coding protein_coding MGP_C3HHeJ_T0051949.1 MGP_C3HHeJ_G0025016.1 mouse_genomes_project 19 58780569 58784439 - MGP_C3HHeJ_P0051949 Vax1 protein_coding protein_coding MGP_C3HHeJ_T0051950.1 MGP_C3HHeJ_G0025016.1 mouse_genomes_project 19 58780980 58781363 - Vax1 protein_coding processed_transcript MGP_C3HHeJ_T0050328.1 MGP_C3HHeJ_G0024467.1 mouse_genomes_project 19 2864122 2871262 - MGP_C3HHeJ_P0050328 Cdc42ep2 protein_coding protein_coding MGP_C3HHeJ_T0051334.1 MGP_C3HHeJ_G0024816.1 mouse_genomes_project 19 36160782 36168578 + MGP_C3HHeJ_P0051334 Cyp26c1 protein_coding protein_coding MGP_C3HHeJ_T0098093.1 MGP_C3HHeJ_G0036305.1 mouse_genomes_project 19 4294052 4294173 + Gm23997 rRNA rRNA MGP_C3HHeJ_T0006970.1 MGP_C3HHeJ_G0005724.1 mouse_genomes_project 19 2010029 2011110 + Gm28901 lincRNA lincRNA MGP_C3HHeJ_T0051378.1 MGP_C3HHeJ_G0024835.1 mouse_genomes_project 19 38040110 38109286 + MGP_C3HHeJ_P0051378 Cyp2c39 protein_coding protein_coding MGP_C3HHeJ_T0013241.1 MGP_C3HHeJ_G0011345.1 mouse_genomes_project 19 13820709 13821496 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050759.1 MGP_C3HHeJ_G0024575.1 mouse_genomes_project 19 7183004 7215489 - MGP_C3HHeJ_P0050759 Myrf protein_coding protein_coding MGP_C3HHeJ_T0050760.1 MGP_C3HHeJ_G0024575.1 mouse_genomes_project 19 7184028 7215489 - Myrf protein_coding retained_intron MGP_C3HHeJ_T0050761.1 MGP_C3HHeJ_G0024575.1 mouse_genomes_project 19 7184427 7215486 - MGP_C3HHeJ_P0050761 Myrf protein_coding protein_coding MGP_C3HHeJ_T0050762.1 MGP_C3HHeJ_G0024575.1 mouse_genomes_project 19 7185023 7192274 - MGP_C3HHeJ_P0050762 Myrf protein_coding protein_coding MGP_C3HHeJ_T0050763.1 MGP_C3HHeJ_G0024575.1 mouse_genomes_project 19 7185108 7215345 - MGP_C3HHeJ_P0050763 Myrf protein_coding protein_coding MGP_C3HHeJ_T0050764.1 MGP_C3HHeJ_G0024575.1 mouse_genomes_project 19 7200764 7215489 - Myrf protein_coding retained_intron MGP_C3HHeJ_T0050790.1 MGP_C3HHeJ_G0024590.1 mouse_genomes_project 19 7724347 7745090 - MGP_C3HHeJ_P0050790 Cd5 protein_coding protein_coding MGP_C3HHeJ_T0050534.1 MGP_C3HHeJ_G0024506.1 mouse_genomes_project 19 3929296 3938964 - MGP_C3HHeJ_P0050534 Kcnk4 protein_coding unknown_likely_coding MGP_C3HHeJ_T0099146.1 MGP_C3HHeJ_G0037340.1 mouse_genomes_project 19 249492 249597 + Gm23940 snRNA snRNA MGP_C3HHeJ_T0051348.1 MGP_C3HHeJ_G0024823.1 mouse_genomes_project 19 36683959 36720022 - MGP_C3HHeJ_P0051348 Fra10ac1 protein_coding protein_coding MGP_C3HHeJ_T0051605.1 MGP_C3HHeJ_G0024910.1 mouse_genomes_project 19 43914745 43916174 - MGP_C3HHeJ_P0051605 Mrpl43 protein_coding protein_coding MGP_C3HHeJ_T0050421.1 MGP_C3HHeJ_G0024492.1 mouse_genomes_project 19 3287274 3306471 + MGP_C3HHeJ_P0050421 Cdc42bpg protein_coding protein_coding MGP_C3HHeJ_T0050422.1 MGP_C3HHeJ_G0024492.1 mouse_genomes_project 19 3302626 3303051 + Cdc42bpg protein_coding retained_intron MGP_C3HHeJ_T0050685.1 MGP_C3HHeJ_G0024546.1 mouse_genomes_project 19 5943898 5958642 + MGP_C3HHeJ_P0050685 Hnrnpul2 protein_coding protein_coding MGP_C3HHeJ_T0051953.1 MGP_C3HHeJ_G0025019.1 mouse_genomes_project 19 58913842 58963026 - MGP_C3HHeJ_P0051953 Pdzd8 protein_coding protein_coding MGP_C3HHeJ_T0010235.1 MGP_C3HHeJ_G0008368.1 mouse_genomes_project 19 45345025 45345134 + Mir146b miRNA miRNA MGP_C3HHeJ_T0003799.1 MGP_C3HHeJ_G0003398.1 mouse_genomes_project 19 43676523 43687243 - Gm20395 antisense antisense MGP_C3HHeJ_T0100406.1 MGP_C3HHeJ_G0038600.1 mouse_genomes_project 19 6022341 6022489 - Snora57 snoRNA snoRNA MGP_C3HHeJ_T0051866.1 MGP_C3HHeJ_G0024993.1 mouse_genomes_project 19 55799612 55872333 - MGP_C3HHeJ_P0051866 Nrap protein_coding protein_coding MGP_C3HHeJ_T0051867.1 MGP_C3HHeJ_G0024993.1 mouse_genomes_project 19 55799616 55872199 - MGP_C3HHeJ_P0051867 Nrap protein_coding protein_coding MGP_C3HHeJ_T0051868.1 MGP_C3HHeJ_G0024993.1 mouse_genomes_project 19 55799618 55872359 - MGP_C3HHeJ_P0051868 Nrap protein_coding protein_coding MGP_C3HHeJ_T0051869.1 MGP_C3HHeJ_G0024993.1 mouse_genomes_project 19 55799678 55872357 - MGP_C3HHeJ_P0051869 Nrap protein_coding protein_coding MGP_C3HHeJ_T0051870.1 MGP_C3HHeJ_G0024993.1 mouse_genomes_project 19 55799768 55861422 - MGP_C3HHeJ_P0051870 Nrap protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051871.1 MGP_C3HHeJ_G0024993.1 mouse_genomes_project 19 55799771 55872199 - MGP_C3HHeJ_P0051871 Nrap protein_coding protein_coding MGP_C3HHeJ_T0006986.1 MGP_C3HHeJ_G0005734.1 mouse_genomes_project 19 13377760 13404905 + C130060C02Rik lincRNA lincRNA MGP_C3HHeJ_T0050389.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3088795 3104132 - MGP_C3HHeJ_P0050389 Snx15 protein_coding protein_coding MGP_C3HHeJ_T0050390.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3089248 3103975 - MGP_C3HHeJ_P0050390 Snx15 protein_coding protein_coding MGP_C3HHeJ_T0050391.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3090028 3091039 - Snx15 protein_coding retained_intron MGP_C3HHeJ_T0050392.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3090028 3103635 - Snx15 protein_coding processed_transcript MGP_C3HHeJ_T0050393.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3090888 3091684 - Snx15 protein_coding processed_transcript MGP_C3HHeJ_T0050394.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3091301 3103961 - Snx15 protein_coding retained_intron MGP_C3HHeJ_T0050395.1 MGP_C3HHeJ_G0024484.1 mouse_genomes_project 19 3091323 3103993 - MGP_C3HHeJ_P0050395 Snx15 protein_coding protein_coding MGP_C3HHeJ_T0051308.1 MGP_C3HHeJ_G0024808.1 mouse_genomes_project 19 35328258 35330323 - MGP_C3HHeJ_P0051308 Fgfbp3 protein_coding protein_coding MGP_C3HHeJ_T0100422.1 MGP_C3HHeJ_G0038616.1 mouse_genomes_project 19 45362525 45362634 + Gm24610 snoRNA snoRNA MGP_C3HHeJ_T0051299.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35240357 35303882 + MGP_C3HHeJ_P0051299 Tnks2 protein_coding protein_coding MGP_C3HHeJ_T0051300.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35240529 35264794 + Tnks2 protein_coding processed_transcript MGP_C3HHeJ_T0051301.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35256931 35263849 + Tnks2 protein_coding retained_intron MGP_C3HHeJ_T0051302.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35266354 35271177 + Tnks2 protein_coding retained_intron MGP_C3HHeJ_T0051303.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35266737 35282192 + MGP_C3HHeJ_P0051303 Tnks2 protein_coding protein_coding MGP_C3HHeJ_T0051304.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35267950 35275971 + MGP_C3HHeJ_P0051304 Tnks2 protein_coding protein_coding MGP_C3HHeJ_T0051305.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35281479 35293803 + MGP_C3HHeJ_P0051305 Tnks2 protein_coding protein_coding MGP_C3HHeJ_T0051306.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35288223 35292798 + Tnks2 protein_coding retained_intron MGP_C3HHeJ_T0051307.1 MGP_C3HHeJ_G0024807.1 mouse_genomes_project 19 35290289 35297833 + Tnks2 protein_coding retained_intron MGP_C3HHeJ_T0051240.1 MGP_C3HHeJ_G0024780.1 mouse_genomes_project 19 31679675 31709000 - MGP_C3HHeJ_P0051240 Lipo4 protein_coding protein_coding MGP_C3HHeJ_T0051241.1 MGP_C3HHeJ_G0024780.1 mouse_genomes_project 19 31680723 31709000 - MGP_C3HHeJ_P0051241 Lipo4 protein_coding protein_coding MGP_C3HHeJ_T0013248.1 MGP_C3HHeJ_G0011352.1 mouse_genomes_project 19 26689552 26689945 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003807.1 MGP_C3HHeJ_G0003406.1 mouse_genomes_project 19 57765809 57798583 + Gm16277 antisense antisense MGP_C3HHeJ_T0051477.1 MGP_C3HHeJ_G0024866.1 mouse_genomes_project 19 40801428 40810536 + MGP_C3HHeJ_P0051477 Ankrd2 protein_coding protein_coding MGP_C3HHeJ_T0050800.1 MGP_C3HHeJ_G0024593.1 mouse_genomes_project 19 7863679 7875792 - MGP_C3HHeJ_P0050800 Tmem132a protein_coding protein_coding MGP_C3HHeJ_T0050801.1 MGP_C3HHeJ_G0024593.1 mouse_genomes_project 19 7863691 7875630 - MGP_C3HHeJ_P0050801 Tmem132a protein_coding protein_coding MGP_C3HHeJ_T0050472.1 MGP_C3HHeJ_G0024496.1 mouse_genomes_project 19 3368481 3382974 + MGP_C3HHeJ_P0050472 Pygm protein_coding protein_coding MGP_C3HHeJ_T0050473.1 MGP_C3HHeJ_G0024496.1 mouse_genomes_project 19 3368497 3382963 + MGP_C3HHeJ_P0050473 Pygm protein_coding protein_coding MGP_C3HHeJ_T0050474.1 MGP_C3HHeJ_G0024496.1 mouse_genomes_project 19 3377703 3379177 + Pygm protein_coding retained_intron MGP_C3HHeJ_T0050475.1 MGP_C3HHeJ_G0024496.1 mouse_genomes_project 19 3382009 3382806 + Pygm protein_coding retained_intron MGP_C3HHeJ_T0098278.1 MGP_C3HHeJ_G0036490.1 mouse_genomes_project 19 8794562 8794701 + Gm26183 scaRNA scaRNA MGP_C3HHeJ_T0051766.1 MGP_C3HHeJ_G0024963.1 mouse_genomes_project 19 46746111 46792392 - MGP_C3HHeJ_P0051766 Col17a1 protein_coding protein_coding MGP_C3HHeJ_T0051767.1 MGP_C3HHeJ_G0024963.1 mouse_genomes_project 19 46746111 46792392 - MGP_C3HHeJ_P0051767 Col17a1 protein_coding protein_coding MGP_C3HHeJ_T0051768.1 MGP_C3HHeJ_G0024963.1 mouse_genomes_project 19 46747867 46749363 - Col17a1 protein_coding processed_transcript MGP_C3HHeJ_T0051769.1 MGP_C3HHeJ_G0024963.1 mouse_genomes_project 19 46769976 46771611 - Col17a1 protein_coding processed_transcript MGP_C3HHeJ_T0050971.1 MGP_C3HHeJ_G0024683.1 mouse_genomes_project 19 11084463 11085535 + MGP_C3HHeJ_P0050971 protein_coding protein_coding MGP_C3HHeJ_T0013239.1 MGP_C3HHeJ_G0011343.1 mouse_genomes_project 19 13333443 13333999 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0003808.1 MGP_C3HHeJ_G0003407.1 mouse_genomes_project 19 58877244 58879158 - Gm29261 antisense antisense MGP_C3HHeJ_T0099161.1 MGP_C3HHeJ_G0037355.1 mouse_genomes_project 19 35927588 35927694 + Gm23026 snRNA snRNA MGP_C3HHeJ_T0051164.1 MGP_C3HHeJ_G0024755.1 mouse_genomes_project 19 27400164 27459984 + MGP_C3HHeJ_P0051164 Pdcd1lg2 protein_coding protein_coding MGP_C3HHeJ_T0051665.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45036019 45053753 + Pprc1 protein_coding processed_transcript MGP_C3HHeJ_T0051666.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048087 45064443 + MGP_C3HHeJ_P0051666 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051667.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048129 45064447 + MGP_C3HHeJ_P0051667 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051668.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048132 45064441 + MGP_C3HHeJ_P0051668 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051669.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048380 45053013 + Pprc1 protein_coding processed_transcript MGP_C3HHeJ_T0051670.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048380 45053994 + MGP_C3HHeJ_P0051670 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051671.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048412 45054359 + MGP_C3HHeJ_P0051671 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051672.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048784 45054184 + MGP_C3HHeJ_P0051672 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051673.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45048807 45054200 + MGP_C3HHeJ_P0051673 Pprc1 protein_coding protein_coding MGP_C3HHeJ_T0051674.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45055633 45064334 + Pprc1 protein_coding retained_intron MGP_C3HHeJ_T0051675.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45059389 45060647 + Pprc1 protein_coding processed_transcript MGP_C3HHeJ_T0051676.1 MGP_C3HHeJ_G0024929.1 mouse_genomes_project 19 45063286 45064334 + Pprc1 protein_coding retained_intron MGP_C3HHeJ_T0050271.1 MGP_C3HHeJ_G0024448.1 mouse_genomes_project 19 2411064 2412085 - MGP_C3HHeJ_P0050271 1700020D05Rik protein_coding protein_coding MGP_C3HHeJ_T0050964.1 MGP_C3HHeJ_G0024676.1 mouse_genomes_project 19 10893788 10896610 + MGP_C3HHeJ_P0050964 protein_coding protein_coding MGP_C3HHeJ_T0099152.1 MGP_C3HHeJ_G0037346.1 mouse_genomes_project 19 13076207 13076314 + Gm24319 snRNA snRNA MGP_C3HHeJ_T0050157.1 MGP_C3HHeJ_G0024404.1 mouse_genomes_project 19 1572239 1615018 + MGP_C3HHeJ_P0050157 Sptbn2 protein_coding protein_coding MGP_C3HHeJ_T0050680.1 MGP_C3HHeJ_G0024544.1 mouse_genomes_project 19 5926981 5929306 + MGP_C3HHeJ_P0050680 Zbtb3 protein_coding protein_coding MGP_C3HHeJ_T0050417.1 MGP_C3HHeJ_G0024491.1 mouse_genomes_project 19 3254567 3279881 + MGP_C3HHeJ_P0050417 Ehd1 protein_coding protein_coding MGP_C3HHeJ_T0050418.1 MGP_C3HHeJ_G0024491.1 mouse_genomes_project 19 3254767 3259236 + Ehd1 protein_coding retained_intron MGP_C3HHeJ_T0050419.1 MGP_C3HHeJ_G0024491.1 mouse_genomes_project 19 3274002 3277662 + Ehd1 protein_coding retained_intron MGP_C3HHeJ_T0050420.1 MGP_C3HHeJ_G0024491.1 mouse_genomes_project 19 3277698 3278145 + Ehd1 protein_coding processed_transcript MGP_C3HHeJ_T0050711.1 MGP_C3HHeJ_G0024555.1 mouse_genomes_project 19 6032914 6051476 + MGP_C3HHeJ_P0050711 Ganab protein_coding protein_coding MGP_C3HHeJ_T0050712.1 MGP_C3HHeJ_G0024555.1 mouse_genomes_project 19 6032946 6051482 + MGP_C3HHeJ_P0050712 Ganab protein_coding unknown_likely_coding MGP_C3HHeJ_T0010226.1 MGP_C3HHeJ_G0008359.1 mouse_genomes_project 19 33621353 33621423 - Gm23075 miRNA miRNA MGP_C3HHeJ_T0050195.1 MGP_C3HHeJ_G0024417.1 mouse_genomes_project 19 1830085 1834779 + MGP_C3HHeJ_P0050195 Mrpl11 protein_coding protein_coding MGP_C3HHeJ_T0051259.1 MGP_C3HHeJ_G0024788.1 mouse_genomes_project 19 32532379 32546636 - MGP_C3HHeJ_P0051259 Acta2 protein_coding protein_coding MGP_C3HHeJ_T0003780.1 MGP_C3HHeJ_G0003386.1 mouse_genomes_project 19 3519403 3520704 - Gm14964 antisense antisense MGP_C3HHeJ_T0003781.1 MGP_C3HHeJ_G0003386.1 mouse_genomes_project 19 3519481 3520481 - Gm14964 antisense antisense MGP_C3HHeJ_T0010222.1 MGP_C3HHeJ_G0008355.1 mouse_genomes_project 19 32694212 32694321 - Gm23060 miRNA miRNA MGP_C3HHeJ_T0050109.1 MGP_C3HHeJ_G0024393.1 mouse_genomes_project 19 1090893 1098398 - MGP_C3HHeJ_P0050109 Ssh3 protein_coding protein_coding MGP_C3HHeJ_T0050110.1 MGP_C3HHeJ_G0024393.1 mouse_genomes_project 19 1090898 1098398 - MGP_C3HHeJ_P0050110 Ssh3 protein_coding protein_coding MGP_C3HHeJ_T0051521.1 MGP_C3HHeJ_G0024881.1 mouse_genomes_project 19 41575723 42213376 - MGP_C3HHeJ_P0051521 Hpse2 protein_coding protein_coding MGP_C3HHeJ_T0098384.1 MGP_C3HHeJ_G0036590.1 mouse_genomes_project 19 26517324 26520086 - 4933413C19Rik sense_intronic sense_intronic MGP_C3HHeJ_T0013234.1 MGP_C3HHeJ_G0011338.1 mouse_genomes_project 19 8420365 8421422 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051051.1 MGP_C3HHeJ_G0024716.1 mouse_genomes_project 19 19792548 20666785 + MGP_C3HHeJ_P0051051 Trpm3 protein_coding protein_coding MGP_C3HHeJ_T0051052.1 MGP_C3HHeJ_G0024716.1 mouse_genomes_project 19 19792548 20666785 + MGP_C3HHeJ_P0051052 Trpm3 protein_coding protein_coding MGP_C3HHeJ_T0051053.1 MGP_C3HHeJ_G0024716.1 mouse_genomes_project 19 19792548 20666785 + MGP_C3HHeJ_P0051053 Trpm3 protein_coding protein_coding MGP_C3HHeJ_T0051054.1 MGP_C3HHeJ_G0024716.1 mouse_genomes_project 19 20109865 20666787 + MGP_C3HHeJ_P0051054 Trpm3 protein_coding protein_coding MGP_C3HHeJ_T0051055.1 MGP_C3HHeJ_G0024716.1 mouse_genomes_project 19 20365438 20440068 + MGP_C3HHeJ_P0051055 Trpm3 protein_coding protein_coding MGP_C3HHeJ_T0051056.1 MGP_C3HHeJ_G0024716.1 mouse_genomes_project 19 20365438 20592889 + MGP_C3HHeJ_P0051056 Trpm3 protein_coding protein_coding MGP_C3HHeJ_T0050100.1 MGP_C3HHeJ_G0024387.1 mouse_genomes_project 19 985904 997060 - MGP_C3HHeJ_P0050100 Carns1 protein_coding protein_coding MGP_C3HHeJ_T0050709.1 MGP_C3HHeJ_G0024554.1 mouse_genomes_project 19 6024584 6029280 + Ints5 protein_coding processed_transcript MGP_C3HHeJ_T0050710.1 MGP_C3HHeJ_G0024554.1 mouse_genomes_project 19 6027042 6032715 + MGP_C3HHeJ_P0050710 Ints5 protein_coding protein_coding MGP_C3HHeJ_T0051432.1 MGP_C3HHeJ_G0024850.1 mouse_genomes_project 19 39792881 39808066 - MGP_C3HHeJ_P0051432 Opalin protein_coding protein_coding MGP_C3HHeJ_T0050280.1 MGP_C3HHeJ_G0024453.1 mouse_genomes_project 19 2558908 2569558 + MGP_C3HHeJ_P0050280 Rela protein_coding protein_coding MGP_C3HHeJ_T0050034.1 MGP_C3HHeJ_G0024373.1 mouse_genomes_project 19 812474 816202 + Doc2g protein_coding retained_intron MGP_C3HHeJ_T0050035.1 MGP_C3HHeJ_G0024373.1 mouse_genomes_project 19 812478 814942 + Doc2g protein_coding retained_intron MGP_C3HHeJ_T0050036.1 MGP_C3HHeJ_G0024373.1 mouse_genomes_project 19 812489 816203 + MGP_C3HHeJ_P0050036 Doc2g protein_coding protein_coding MGP_C3HHeJ_T0050037.1 MGP_C3HHeJ_G0024373.1 mouse_genomes_project 19 812853 815331 + Doc2g protein_coding retained_intron MGP_C3HHeJ_T0050975.1 MGP_C3HHeJ_G0024687.1 mouse_genomes_project 19 11179361 11180309 - MGP_C3HHeJ_P0050975 Olfr1501 protein_coding protein_coding MGP_C3HHeJ_T0006991.1 MGP_C3HHeJ_G0005738.1 mouse_genomes_project 19 21793382 21795084 + 1700021P04Rik lincRNA lincRNA MGP_C3HHeJ_T0051322.1 MGP_C3HHeJ_G0024811.1 mouse_genomes_project 19 35637388 35652073 + MGP_C3HHeJ_P0051322 March5 protein_coding protein_coding MGP_C3HHeJ_T0051323.1 MGP_C3HHeJ_G0024811.1 mouse_genomes_project 19 35637396 35648638 + March5 protein_coding retained_intron MGP_C3HHeJ_T0051324.1 MGP_C3HHeJ_G0024811.1 mouse_genomes_project 19 35637690 35657418 + MGP_C3HHeJ_P0051324 March5 protein_coding protein_coding MGP_C3HHeJ_T0050723.1 MGP_C3HHeJ_G0024561.1 mouse_genomes_project 19 6108124 6119130 + MGP_C3HHeJ_P0050723 Eef1g protein_coding protein_coding MGP_C3HHeJ_T0050724.1 MGP_C3HHeJ_G0024561.1 mouse_genomes_project 19 6108480 6113435 + Eef1g protein_coding processed_transcript MGP_C3HHeJ_T0050725.1 MGP_C3HHeJ_G0024561.1 mouse_genomes_project 19 6109129 6113555 + Eef1g protein_coding processed_transcript MGP_C3HHeJ_T0050726.1 MGP_C3HHeJ_G0024561.1 mouse_genomes_project 19 6109129 6111111 + Eef1g protein_coding retained_intron MGP_C3HHeJ_T0050727.1 MGP_C3HHeJ_G0024561.1 mouse_genomes_project 19 6109129 6110416 + Eef1g protein_coding retained_intron MGP_C3HHeJ_T0050728.1 MGP_C3HHeJ_G0024561.1 mouse_genomes_project 19 6113322 6119422 + Eef1g protein_coding retained_intron MGP_C3HHeJ_T0050877.1 MGP_C3HHeJ_G0024618.1 mouse_genomes_project 19 8689269 8696692 - Ms4a6d protein_coding processed_transcript MGP_C3HHeJ_T0050878.1 MGP_C3HHeJ_G0024618.1 mouse_genomes_project 19 8689375 8702810 - MGP_C3HHeJ_P0050878 Ms4a6d protein_coding protein_coding MGP_C3HHeJ_T0050879.1 MGP_C3HHeJ_G0024618.1 mouse_genomes_project 19 8690253 8696786 - Ms4a6d protein_coding retained_intron MGP_C3HHeJ_T0099158.1 MGP_C3HHeJ_G0037352.1 mouse_genomes_project 19 33121007 33121168 + Gm22082 snRNA snRNA MGP_C3HHeJ_T0051433.1 MGP_C3HHeJ_G0024851.1 mouse_genomes_project 19 39814933 39934874 - MGP_C3HHeJ_P0051433 Tll2 protein_coding protein_coding MGP_C3HHeJ_T0051434.1 MGP_C3HHeJ_G0024851.1 mouse_genomes_project 19 39814933 39934874 - MGP_C3HHeJ_P0051434 Tll2 protein_coding protein_coding MGP_C3HHeJ_T0011384.1 MGP_C3HHeJ_G0009517.1 mouse_genomes_project 19 28752405 28752723 + Gm23426 misc_RNA misc_RNA MGP_C3HHeJ_T0051121.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26186110 26623110 - MGP_C3HHeJ_P0051121 Glis3 protein_coding protein_coding MGP_C3HHeJ_T0051122.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26189606 26255141 - Glis3 protein_coding processed_transcript MGP_C3HHeJ_T0051123.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26189623 26622699 - MGP_C3HHeJ_P0051123 Glis3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051124.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26189685 26228541 - Glis3 protein_coding processed_transcript MGP_C3HHeJ_T0051125.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26190232 26475827 - Glis3 protein_coding retained_intron MGP_C3HHeJ_T0051126.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26191210 26211126 - Glis3 protein_coding retained_intron MGP_C3HHeJ_T0051127.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26279177 26623110 - MGP_C3HHeJ_P0051127 Glis3 protein_coding protein_coding MGP_C3HHeJ_T0051128.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26467253 26621723 - MGP_C3HHeJ_P0051128 Glis3 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051129.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26467253 26609721 - MGP_C3HHeJ_P0051129 Glis3 protein_coding protein_coding MGP_C3HHeJ_T0051130.1 MGP_C3HHeJ_G0024743.1 mouse_genomes_project 19 26467253 26621723 - MGP_C3HHeJ_P0051130 Glis3 protein_coding protein_coding MGP_C3HHeJ_T0050396.1 MGP_C3HHeJ_G0024485.1 mouse_genomes_project 19 3112651 3119402 - Arl2 protein_coding retained_intron MGP_C3HHeJ_T0050397.1 MGP_C3HHeJ_G0024485.1 mouse_genomes_project 19 3112660 3119668 - MGP_C3HHeJ_P0050397 Arl2 protein_coding protein_coding MGP_C3HHeJ_T0050398.1 MGP_C3HHeJ_G0024485.1 mouse_genomes_project 19 3115747 3116438 - Arl2 protein_coding retained_intron MGP_C3HHeJ_T0050592.1 MGP_C3HHeJ_G0024525.1 mouse_genomes_project 19 4462447 4470727 + MGP_C3HHeJ_P0050592 2700081O15Rik protein_coding protein_coding MGP_C3HHeJ_T0050593.1 MGP_C3HHeJ_G0024525.1 mouse_genomes_project 19 4463539 4465911 + 2700081O15Rik protein_coding retained_intron MGP_C3HHeJ_T0050594.1 MGP_C3HHeJ_G0024525.1 mouse_genomes_project 19 4464912 4468161 + MGP_C3HHeJ_P0050594 2700081O15Rik protein_coding protein_coding MGP_C3HHeJ_T0050595.1 MGP_C3HHeJ_G0024525.1 mouse_genomes_project 19 4465231 4467495 + MGP_C3HHeJ_P0050595 2700081O15Rik protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050596.1 MGP_C3HHeJ_G0024525.1 mouse_genomes_project 19 4465241 4467147 + MGP_C3HHeJ_P0050596 2700081O15Rik protein_coding protein_coding MGP_C3HHeJ_T0050597.1 MGP_C3HHeJ_G0024525.1 mouse_genomes_project 19 4465850 4470363 + 2700081O15Rik protein_coding retained_intron MGP_C3HHeJ_T0050714.1 MGP_C3HHeJ_G0024557.1 mouse_genomes_project 19 6066370 6068345 - MGP_C3HHeJ_P0050714 Rom1 protein_coding protein_coding MGP_C3HHeJ_T0051271.1 MGP_C3HHeJ_G0024796.1 mouse_genomes_project 19 32935044 32950127 - MGP_C3HHeJ_P0051271 Ifit1bl2 protein_coding protein_coding MGP_C3HHeJ_T0051272.1 MGP_C3HHeJ_G0024796.1 mouse_genomes_project 19 32935046 32960695 - MGP_C3HHeJ_P0051272 Ifit1bl2 protein_coding protein_coding MGP_C3HHeJ_T0050846.1 MGP_C3HHeJ_G0024608.1 mouse_genomes_project 19 8283123 8289893 - Ms4a5 protein_coding retained_intron MGP_C3HHeJ_T0050847.1 MGP_C3HHeJ_G0024608.1 mouse_genomes_project 19 8283751 8294263 - MGP_C3HHeJ_P0050847 Ms4a5 protein_coding protein_coding MGP_C3HHeJ_T0050848.1 MGP_C3HHeJ_G0024608.1 mouse_genomes_project 19 8283751 8294323 - MGP_C3HHeJ_P0050848 Ms4a5 protein_coding protein_coding MGP_C3HHeJ_T0050849.1 MGP_C3HHeJ_G0024608.1 mouse_genomes_project 19 8284046 8290104 - Ms4a5 protein_coding processed_transcript MGP_C3HHeJ_T0050850.1 MGP_C3HHeJ_G0024608.1 mouse_genomes_project 19 8287186 8294310 - MGP_C3HHeJ_P0050850 Ms4a5 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0010197.1 MGP_C3HHeJ_G0008330.1 mouse_genomes_project 19 1043043 1043130 - Gm26115 miRNA miRNA MGP_C3HHeJ_T0051440.1 MGP_C3HHeJ_G0024856.1 mouse_genomes_project 19 40327154 40331770 + MGP_C3HHeJ_P0051440 AI606181 protein_coding protein_coding MGP_C3HHeJ_T0100419.1 MGP_C3HHeJ_G0038613.1 mouse_genomes_project 19 36561429 36561554 + Gm23300 snoRNA snoRNA MGP_C3HHeJ_T0050885.1 MGP_C3HHeJ_G0024620.1 mouse_genomes_project 19 8733983 8745293 - MGP_C3HHeJ_P0050885 Ms4a3 protein_coding protein_coding MGP_C3HHeJ_T0050886.1 MGP_C3HHeJ_G0024620.1 mouse_genomes_project 19 8733986 8745322 - MGP_C3HHeJ_P0050886 Ms4a3 protein_coding protein_coding MGP_C3HHeJ_T0050887.1 MGP_C3HHeJ_G0024620.1 mouse_genomes_project 19 8736389 8745339 - Ms4a3 protein_coding retained_intron MGP_C3HHeJ_T0051705.1 MGP_C3HHeJ_G0024937.1 mouse_genomes_project 19 45331127 45340008 - MGP_C3HHeJ_P0051705 Cuedc2 protein_coding protein_coding MGP_C3HHeJ_T0051706.1 MGP_C3HHeJ_G0024937.1 mouse_genomes_project 19 45331127 45340008 - MGP_C3HHeJ_P0051706 Cuedc2 protein_coding protein_coding MGP_C3HHeJ_T0051967.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60480601 60510508 + MGP_C3HHeJ_P0051967 Fam45a protein_coding protein_coding MGP_C3HHeJ_T0051968.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60480628 60506759 + MGP_C3HHeJ_P0051968 Fam45a protein_coding protein_coding MGP_C3HHeJ_T0051969.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60480634 60511732 + MGP_C3HHeJ_P0051969 Fam45a protein_coding protein_coding MGP_C3HHeJ_T0051970.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60480639 60488332 + Fam45a protein_coding retained_intron MGP_C3HHeJ_T0051971.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60480654 60492444 + MGP_C3HHeJ_P0051971 Fam45a protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051972.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60481074 60484670 + Fam45a protein_coding processed_transcript MGP_C3HHeJ_T0051973.1 MGP_C3HHeJ_G0025027.1 mouse_genomes_project 19 60506445 60510619 + Fam45a protein_coding retained_intron MGP_C3HHeJ_T0051610.1 MGP_C3HHeJ_G0024913.1 mouse_genomes_project 19 43939011 43946040 - Pdzd7 protein_coding processed_transcript MGP_C3HHeJ_T0051611.1 MGP_C3HHeJ_G0024913.1 mouse_genomes_project 19 43939012 43968553 - MGP_C3HHeJ_P0051611 Pdzd7 protein_coding protein_coding MGP_C3HHeJ_T0051612.1 MGP_C3HHeJ_G0024913.1 mouse_genomes_project 19 43939012 43967711 - MGP_C3HHeJ_P0051612 Pdzd7 protein_coding protein_coding MGP_C3HHeJ_T0051785.1 MGP_C3HHeJ_G0024968.1 mouse_genomes_project 19 47045100 47146856 + MGP_C3HHeJ_P0051785 Cfap58 protein_coding protein_coding MGP_C3HHeJ_T0010230.1 MGP_C3HHeJ_G0008363.1 mouse_genomes_project 19 41051879 41051976 + Gm26339 miRNA miRNA MGP_C3HHeJ_T0051825.1 MGP_C3HHeJ_G0024984.1 mouse_genomes_project 19 53410464 53414265 + MGP_C3HHeJ_P0051825 Adra2a protein_coding protein_coding MGP_C3HHeJ_T0050159.1 MGP_C3HHeJ_G0024406.1 mouse_genomes_project 19 1619207 1625724 + Rbm4b protein_coding retained_intron MGP_C3HHeJ_T0050160.1 MGP_C3HHeJ_G0024406.1 mouse_genomes_project 19 1619229 1624190 + Rbm4b protein_coding retained_intron MGP_C3HHeJ_T0050161.1 MGP_C3HHeJ_G0024406.1 mouse_genomes_project 19 1619235 1628790 + MGP_C3HHeJ_P0050161 Rbm4b protein_coding protein_coding MGP_C3HHeJ_T0050162.1 MGP_C3HHeJ_G0024406.1 mouse_genomes_project 19 1619245 1626978 + MGP_C3HHeJ_P0050162 Rbm4b protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050163.1 MGP_C3HHeJ_G0024406.1 mouse_genomes_project 19 1624243 1629915 + Rbm4b protein_coding retained_intron MGP_C3HHeJ_T0050164.1 MGP_C3HHeJ_G0024406.1 mouse_genomes_project 19 1627312 1628491 + Rbm4b protein_coding processed_transcript MGP_C3HHeJ_T0017455.1 MGP_C3HHeJ_G0015139.1 mouse_genomes_project 19 3246637 3254448 - Gm14963 processed_transcript processed_transcript MGP_C3HHeJ_T0050960.1 MGP_C3HHeJ_G0024672.1 mouse_genomes_project 19 10606880 10607807 + MGP_C3HHeJ_P0050960 Olfr1467 protein_coding protein_coding MGP_C3HHeJ_T0051737.1 MGP_C3HHeJ_G0024950.1 mouse_genomes_project 19 46084441 46096297 + MGP_C3HHeJ_P0051737 Ina protein_coding protein_coding MGP_C3HHeJ_T0051060.1 MGP_C3HHeJ_G0024719.1 mouse_genomes_project 19 21017005 21170131 - MGP_C3HHeJ_P0051060 Mamdc2 protein_coding protein_coding MGP_C3HHeJ_T0050957.1 MGP_C3HHeJ_G0024669.1 mouse_genomes_project 19 10389733 10390657 + MGP_C3HHeJ_P0050957 Olfr1462 protein_coding protein_coding MGP_C3HHeJ_T0098097.1 MGP_C3HHeJ_G0036309.1 mouse_genomes_project 19 42782669 42782786 + n-R5s21 rRNA rRNA MGP_C3HHeJ_T0007033.1 MGP_C3HHeJ_G0005767.1 mouse_genomes_project 19 59529699 59534541 - Gm17203 lincRNA lincRNA MGP_C3HHeJ_T0050990.1 MGP_C3HHeJ_G0024693.1 mouse_genomes_project 19 13845661 14032313 + MGP_C3HHeJ_P0050990 Gna14 protein_coding protein_coding MGP_C3HHeJ_T0051342.1 MGP_C3HHeJ_G0024820.1 mouse_genomes_project 19 36587029 36606523 + MGP_C3HHeJ_P0051342 Ffar4 protein_coding protein_coding MGP_C3HHeJ_T0050243.1 MGP_C3HHeJ_G0024443.1 mouse_genomes_project 19 2367357 2370615 - MGP_C3HHeJ_P0050243 Ctsw protein_coding protein_coding MGP_C3HHeJ_T0013230.1 MGP_C3HHeJ_G0011334.1 mouse_genomes_project 19 5708958 5709748 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051574.1 MGP_C3HHeJ_G0024898.1 mouse_genomes_project 19 43065709 43107593 + MGP_C3HHeJ_P0051574 Scd3 protein_coding protein_coding MGP_C3HHeJ_T0051575.1 MGP_C3HHeJ_G0024898.1 mouse_genomes_project 19 43077725 43105448 + MGP_C3HHeJ_P0051575 Scd3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051436.1 MGP_C3HHeJ_G0024853.1 mouse_genomes_project 19 40004084 40121709 - MGP_C3HHeJ_P0051436 Pik3ap1 protein_coding protein_coding MGP_C3HHeJ_T0100410.1 MGP_C3HHeJ_G0038604.1 mouse_genomes_project 19 16816059 16816191 + Gm25437 snoRNA snoRNA MGP_C3HHeJ_T0051333.1 MGP_C3HHeJ_G0024815.1 mouse_genomes_project 19 36017513 36158117 + MGP_C3HHeJ_P0051333 Exoc6 protein_coding protein_coding MGP_C3HHeJ_T0050930.1 MGP_C3HHeJ_G0024650.1 mouse_genomes_project 19 9876387 9882063 + MGP_C3HHeJ_P0050930 Olfr1443 protein_coding protein_coding MGP_C3HHeJ_T0051938.1 MGP_C3HHeJ_G0025009.1 mouse_genomes_project 19 58263594 58276128 + MGP_C3HHeJ_P0051938 Pnlip protein_coding protein_coding MGP_C3HHeJ_T0050237.1 MGP_C3HHeJ_G0024439.1 mouse_genomes_project 19 2327542 2329702 + AI837181 protein_coding processed_transcript MGP_C3HHeJ_T0050238.1 MGP_C3HHeJ_G0024439.1 mouse_genomes_project 19 2327542 2329702 + MGP_C3HHeJ_P0050238 AI837181 protein_coding protein_coding MGP_C3HHeJ_T0051624.1 MGP_C3HHeJ_G0024919.1 mouse_genomes_project 19 44513815 44521784 - MGP_C3HHeJ_P0051624 Poll protein_coding unknown_likely_coding MGP_C3HHeJ_T0050244.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2376729 2380322 + MGP_C3HHeJ_P0050244 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050245.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377071 2378821 + MGP_C3HHeJ_P0050245 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050246.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377444 2384626 + MGP_C3HHeJ_P0050246 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050247.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377463 2381139 + Efemp2 protein_coding retained_intron MGP_C3HHeJ_T0050248.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377492 2383514 + MGP_C3HHeJ_P0050248 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050249.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377492 2384626 + MGP_C3HHeJ_P0050249 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050250.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377499 2381000 + MGP_C3HHeJ_P0050250 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050251.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377502 2384626 + MGP_C3HHeJ_P0050251 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050252.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377529 2378221 + Efemp2 protein_coding retained_intron MGP_C3HHeJ_T0050253.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377820 2381064 + MGP_C3HHeJ_P0050253 Efemp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050254.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2377872 2384548 + MGP_C3HHeJ_P0050254 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050255.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2378057 2382852 + MGP_C3HHeJ_P0050255 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050256.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2382817 2383689 + MGP_C3HHeJ_P0050256 Efemp2 protein_coding protein_coding MGP_C3HHeJ_T0050257.1 MGP_C3HHeJ_G0024444.1 mouse_genomes_project 19 2382895 2384432 + MGP_C3HHeJ_P0050257 Efemp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050969.1 MGP_C3HHeJ_G0024681.1 mouse_genomes_project 19 11059205 11060153 + MGP_C3HHeJ_P0050969 Olfr1494 protein_coding protein_coding MGP_C3HHeJ_T0050750.1 MGP_C3HHeJ_G0024572.1 mouse_genomes_project 19 7156785 7170766 + MGP_C3HHeJ_P0050750 Fads1 protein_coding protein_coding MGP_C3HHeJ_T0003793.1 MGP_C3HHeJ_G0003395.1 mouse_genomes_project 19 36807746 36825165 - Gm42723 antisense antisense MGP_C3HHeJ_T0003794.1 MGP_C3HHeJ_G0003395.1 mouse_genomes_project 19 36824106 36825150 - Gm42723 antisense antisense MGP_C3HHeJ_T0051076.1 MGP_C3HHeJ_G0024730.1 mouse_genomes_project 19 22680922 22683267 - MGP_C3HHeJ_P0051076 Foxd4 protein_coding protein_coding MGP_C3HHeJ_T0003796.1 MGP_C3HHeJ_G0003397.1 mouse_genomes_project 19 41315700 41338176 - Gm16541 antisense antisense MGP_C3HHeJ_T0003797.1 MGP_C3HHeJ_G0003397.1 mouse_genomes_project 19 41315706 41338163 - Gm16541 antisense antisense MGP_C3HHeJ_T0003798.1 MGP_C3HHeJ_G0003397.1 mouse_genomes_project 19 41337574 41338176 - Gm16541 antisense antisense MGP_C3HHeJ_T0051061.1 MGP_C3HHeJ_G0024720.1 mouse_genomes_project 19 21284181 21376109 - MGP_C3HHeJ_P0051061 1700028P14Rik protein_coding protein_coding MGP_C3HHeJ_T0003778.1 MGP_C3HHeJ_G0003385.1 mouse_genomes_project 19 3339170 3347202 - Gm14966 antisense antisense MGP_C3HHeJ_T0003779.1 MGP_C3HHeJ_G0003385.1 mouse_genomes_project 19 3339246 3347426 - Gm14966 antisense antisense MGP_C3HHeJ_T0050111.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1099405 1113196 - MGP_C3HHeJ_P0050111 Ankrd13d protein_coding protein_coding MGP_C3HHeJ_T0050112.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1099405 1112236 - MGP_C3HHeJ_P0050112 Ankrd13d protein_coding protein_coding MGP_C3HHeJ_T0050113.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1099407 1113198 - MGP_C3HHeJ_P0050113 Ankrd13d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050114.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1099623 1100520 - MGP_C3HHeJ_P0050114 Ankrd13d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050115.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1101846 1111072 - MGP_C3HHeJ_P0050115 Ankrd13d protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050116.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1109526 1113198 - Ankrd13d protein_coding processed_transcript MGP_C3HHeJ_T0050117.1 MGP_C3HHeJ_G0024394.1 mouse_genomes_project 19 1110706 1113094 - MGP_C3HHeJ_P0050117 Ankrd13d protein_coding protein_coding MGP_C3HHeJ_T0007012.1 MGP_C3HHeJ_G0005752.1 mouse_genomes_project 19 43585200 43588103 - Gm26644 lincRNA lincRNA MGP_C3HHeJ_T0100424.1 MGP_C3HHeJ_G0038618.1 mouse_genomes_project 19 55751914 55752042 - Gm22271 snoRNA snoRNA MGP_C3HHeJ_T0050944.1 MGP_C3HHeJ_G0024656.1 mouse_genomes_project 19 10089597 10090598 + MGP_C3HHeJ_P0050944 Olfr1445 protein_coding protein_coding MGP_C3HHeJ_T0011385.1 MGP_C3HHeJ_G0009518.1 mouse_genomes_project 19 31111044 31111403 - Gm22482 misc_RNA misc_RNA MGP_C3HHeJ_T0051077.1 MGP_C3HHeJ_G0024731.1 mouse_genomes_project 19 22696298 22746710 - MGP_C3HHeJ_P0051077 Cbwd1 protein_coding protein_coding MGP_C3HHeJ_T0003786.1 MGP_C3HHeJ_G0003390.1 mouse_genomes_project 19 8214117 8312389 + 4930526L06Rik antisense antisense MGP_C3HHeJ_T0051979.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60728493 60821333 - MGP_C3HHeJ_P0051979 Zfp950 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051980.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60791960 60821378 - MGP_C3HHeJ_P0051980 Zfp950 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051981.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60793516 60794351 - Zfp950 protein_coding retained_intron MGP_C3HHeJ_T0051982.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60794101 60821355 - MGP_C3HHeJ_P0051982 Zfp950 protein_coding protein_coding MGP_C3HHeJ_T0051983.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60794120 60821357 - MGP_C3HHeJ_P0051983 Zfp950 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051984.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60794251 60821308 - MGP_C3HHeJ_P0051984 Zfp950 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051985.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60795109 60821300 - MGP_C3HHeJ_P0051985 Zfp950 protein_coding protein_coding MGP_C3HHeJ_T0051986.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60796413 60796584 - MGP_C3HHeJ_P0051986 Zfp950 protein_coding protein_coding MGP_C3HHeJ_T0051987.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60798910 60821328 - MGP_C3HHeJ_P0051987 Zfp950 protein_coding protein_coding MGP_C3HHeJ_T0051988.1 MGP_C3HHeJ_G0025031.1 mouse_genomes_project 19 60803882 60804446 - MGP_C3HHeJ_P0051988 Zfp950 protein_coding protein_coding MGP_C3HHeJ_T0050073.1 MGP_C3HHeJ_G0024381.1 mouse_genomes_project 19 934805 946190 - MGP_C3HHeJ_P0050073 Aip protein_coding protein_coding MGP_C3HHeJ_T0050074.1 MGP_C3HHeJ_G0024381.1 mouse_genomes_project 19 934823 941930 - MGP_C3HHeJ_P0050074 Aip protein_coding protein_coding MGP_C3HHeJ_T0050075.1 MGP_C3HHeJ_G0024381.1 mouse_genomes_project 19 935806 946180 - MGP_C3HHeJ_P0050075 Aip protein_coding protein_coding MGP_C3HHeJ_T0050076.1 MGP_C3HHeJ_G0024381.1 mouse_genomes_project 19 938615 944919 - Aip protein_coding processed_transcript MGP_C3HHeJ_T0050077.1 MGP_C3HHeJ_G0024381.1 mouse_genomes_project 19 941287 946122 - Aip protein_coding retained_intron MGP_C3HHeJ_T0050956.1 MGP_C3HHeJ_G0024668.1 mouse_genomes_project 19 10362077 10363016 + MGP_C3HHeJ_P0050956 Olfr1461 protein_coding protein_coding MGP_C3HHeJ_T0049967.1 MGP_C3HHeJ_G0024359.1 mouse_genomes_project 19 168248 172791 - MGP_C3HHeJ_P0049967 Gal protein_coding protein_coding MGP_C3HHeJ_T0098095.1 MGP_C3HHeJ_G0036307.1 mouse_genomes_project 19 35605491 35605597 + Gm23918 rRNA rRNA MGP_C3HHeJ_T0050199.1 MGP_C3HHeJ_G0024421.1 mouse_genomes_project 19 1917881 1926355 + MGP_C3HHeJ_P0050199 Brms1 protein_coding protein_coding MGP_C3HHeJ_T0100412.1 MGP_C3HHeJ_G0038606.1 mouse_genomes_project 19 19891141 19891239 - Gm22506 snoRNA snoRNA MGP_C3HHeJ_T0051677.1 MGP_C3HHeJ_G0024930.1 mouse_genomes_project 19 45067396 45078250 + MGP_C3HHeJ_P0051677 Nolc1 protein_coding protein_coding MGP_C3HHeJ_T0051678.1 MGP_C3HHeJ_G0024930.1 mouse_genomes_project 19 45067563 45078259 + MGP_C3HHeJ_P0051678 Nolc1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051245.1 MGP_C3HHeJ_G0024782.1 mouse_genomes_project 19 32247260 32262886 + MGP_C3HHeJ_P0051245 Lipf protein_coding protein_coding MGP_C3HHeJ_T0051835.1 MGP_C3HHeJ_G0024989.1 mouse_genomes_project 19 54728952 54748996 - MGP_C3HHeJ_P0051835 Zdhhc6 protein_coding protein_coding MGP_C3HHeJ_T0051530.1 MGP_C3HHeJ_G0024886.1 mouse_genomes_project 19 42522841 42576241 + MGP_C3HHeJ_P0051530 Entpd7 protein_coding protein_coding MGP_C3HHeJ_T0051531.1 MGP_C3HHeJ_G0024886.1 mouse_genomes_project 19 42522978 42527113 + Entpd7 protein_coding retained_intron MGP_C3HHeJ_T0051532.1 MGP_C3HHeJ_G0024886.1 mouse_genomes_project 19 42523009 42565212 + Entpd7 protein_coding retained_intron MGP_C3HHeJ_T0051533.1 MGP_C3HHeJ_G0024886.1 mouse_genomes_project 19 42546683 42553148 + Entpd7 protein_coding retained_intron MGP_C3HHeJ_T0051534.1 MGP_C3HHeJ_G0024886.1 mouse_genomes_project 19 42568963 42570730 + Entpd7 protein_coding retained_intron MGP_C3HHeJ_T0050080.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 970617 975929 + MGP_C3HHeJ_P0050080 Coro1b protein_coding protein_coding MGP_C3HHeJ_T0050081.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 970617 972504 + MGP_C3HHeJ_P0050081 Coro1b protein_coding protein_coding MGP_C3HHeJ_T0050082.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 970626 971554 + Coro1b protein_coding retained_intron MGP_C3HHeJ_T0050083.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 970630 971634 + Coro1b protein_coding retained_intron MGP_C3HHeJ_T0050084.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 970659 973499 + Coro1b protein_coding processed_transcript MGP_C3HHeJ_T0050085.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 970662 972253 + Coro1b protein_coding retained_intron MGP_C3HHeJ_T0050086.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 972542 974702 + Coro1b protein_coding retained_intron MGP_C3HHeJ_T0050087.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 973369 975338 + Coro1b protein_coding retained_intron MGP_C3HHeJ_T0050088.1 MGP_C3HHeJ_G0024384.1 mouse_genomes_project 19 973579 975555 + Coro1b protein_coding retained_intron MGP_C3HHeJ_T0013260.1 MGP_C3HHeJ_G0011364.1 mouse_genomes_project 19 58391550 58392072 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0050220.1 MGP_C3HHeJ_G0024429.1 mouse_genomes_project 19 2011626 2169598 - MGP_C3HHeJ_P0050220 Pacs1 protein_coding protein_coding MGP_C3HHeJ_T0007029.1 MGP_C3HHeJ_G0005763.1 mouse_genomes_project 19 55083565 55147862 - lincRNA lincRNA MGP_C3HHeJ_T0051740.1 MGP_C3HHeJ_G0024953.1 mouse_genomes_project 19 46155057 46162128 - MGP_C3HHeJ_P0051740 Usmg5 protein_coding protein_coding MGP_C3HHeJ_T0050476.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3383854 3399729 + MGP_C3HHeJ_P0050476 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050477.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3383970 3388148 + MGP_C3HHeJ_P0050477 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050478.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3384260 3388000 + MGP_C3HHeJ_P0050478 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050479.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3384378 3387089 + MGP_C3HHeJ_P0050479 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050480.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3384382 3387993 + MGP_C3HHeJ_P0050480 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050481.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3384388 3388852 + MGP_C3HHeJ_P0050481 Rasgrp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050482.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3384431 3386961 + Rasgrp2 protein_coding processed_transcript MGP_C3HHeJ_T0050483.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3384627 3388153 + MGP_C3HHeJ_P0050483 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050484.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385041 3386945 + Rasgrp2 protein_coding processed_transcript MGP_C3HHeJ_T0050485.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385047 3399724 + MGP_C3HHeJ_P0050485 Rasgrp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050486.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385061 3388936 + MGP_C3HHeJ_P0050486 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050487.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385076 3399735 + MGP_C3HHeJ_P0050487 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050488.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385078 3389339 + MGP_C3HHeJ_P0050488 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050489.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385097 3399734 + MGP_C3HHeJ_P0050489 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050490.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3385137 3388127 + MGP_C3HHeJ_P0050490 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050491.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3386209 3386961 + Rasgrp2 protein_coding processed_transcript MGP_C3HHeJ_T0050492.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3386216 3388153 + MGP_C3HHeJ_P0050492 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050493.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3386232 3388153 + MGP_C3HHeJ_P0050493 Rasgrp2 protein_coding protein_coding MGP_C3HHeJ_T0050494.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3386233 3388153 + Rasgrp2 protein_coding processed_transcript MGP_C3HHeJ_T0050495.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3387432 3389486 + Rasgrp2 protein_coding retained_intron MGP_C3HHeJ_T0050496.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3389096 3391576 + Rasgrp2 protein_coding retained_intron MGP_C3HHeJ_T0050497.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3389255 3394183 + Rasgrp2 protein_coding retained_intron MGP_C3HHeJ_T0050498.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3389341 3398556 + Rasgrp2 protein_coding retained_intron MGP_C3HHeJ_T0050499.1 MGP_C3HHeJ_G0024497.1 mouse_genomes_project 19 3392919 3399730 + Rasgrp2 protein_coding processed_transcript MGP_C3HHeJ_T0050748.1 MGP_C3HHeJ_G0024570.1 mouse_genomes_project 19 7007558 7025682 + MGP_C3HHeJ_P0050748 Fads3 protein_coding protein_coding MGP_C3HHeJ_T0050888.1 MGP_C3HHeJ_G0024621.1 mouse_genomes_project 19 8752411 8765430 - MGP_C3HHeJ_P0050888 Oosp2 protein_coding protein_coding MGP_C3HHeJ_T0050889.1 MGP_C3HHeJ_G0024621.1 mouse_genomes_project 19 8752412 8765473 - MGP_C3HHeJ_P0050889 Oosp2 protein_coding protein_coding MGP_C3HHeJ_T0050423.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317512 3323414 + MGP_C3HHeJ_P0050423 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050424.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317512 3323425 + MGP_C3HHeJ_P0050424 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050425.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317546 3323423 + MGP_C3HHeJ_P0050425 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050426.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317572 3323423 + MGP_C3HHeJ_P0050426 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050427.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317572 3323423 + MGP_C3HHeJ_P0050427 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050428.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317579 3323424 + Men1 protein_coding retained_intron MGP_C3HHeJ_T0050429.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317580 3323317 + MGP_C3HHeJ_P0050429 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050430.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317597 3322997 + MGP_C3HHeJ_P0050430 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050431.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317644 3323423 + MGP_C3HHeJ_P0050431 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050432.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3317994 3322706 + MGP_C3HHeJ_P0050432 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050433.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3319443 3320942 + MGP_C3HHeJ_P0050433 Men1 protein_coding protein_coding MGP_C3HHeJ_T0050434.1 MGP_C3HHeJ_G0024493.1 mouse_genomes_project 19 3322380 3323346 + MGP_C3HHeJ_P0050434 Men1 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0007006.1 MGP_C3HHeJ_G0005747.1 mouse_genomes_project 19 35600158 35625300 + A330032B11Rik lincRNA lincRNA MGP_C3HHeJ_T0051057.1 MGP_C3HHeJ_G0024717.1 mouse_genomes_project 19 20841100 20866305 + MGP_C3HHeJ_P0051057 Klf9 protein_coding protein_coding MGP_C3HHeJ_T0050151.1 MGP_C3HHeJ_G0024401.1 mouse_genomes_project 19 1470850 1474733 - MGP_C3HHeJ_P0050151 Lrfn4 protein_coding protein_coding MGP_C3HHeJ_T0050152.1 MGP_C3HHeJ_G0024401.1 mouse_genomes_project 19 1470857 1474568 - MGP_C3HHeJ_P0050152 Lrfn4 protein_coding protein_coding MGP_C3HHeJ_T0051150.1 MGP_C3HHeJ_G0024750.1 mouse_genomes_project 19 27230908 27295836 + MGP_C3HHeJ_P0051150 Jak2 protein_coding protein_coding MGP_C3HHeJ_T0051151.1 MGP_C3HHeJ_G0024750.1 mouse_genomes_project 19 27230908 27295836 + MGP_C3HHeJ_P0051151 Jak2 protein_coding protein_coding MGP_C3HHeJ_T0007031.1 MGP_C3HHeJ_G0005765.1 mouse_genomes_project 19 58188434 58221369 + 1810007D17Rik lincRNA lincRNA MGP_C3HHeJ_T0051812.1 MGP_C3HHeJ_G0024979.1 mouse_genomes_project 19 52930983 52977939 + MGP_C3HHeJ_P0051812 Smc3 protein_coding protein_coding MGP_C3HHeJ_T0051813.1 MGP_C3HHeJ_G0024979.1 mouse_genomes_project 19 52966938 52967967 + Smc3 protein_coding retained_intron MGP_C3HHeJ_T0051814.1 MGP_C3HHeJ_G0024979.1 mouse_genomes_project 19 52967177 52976884 + MGP_C3HHeJ_P0051814 Smc3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051815.1 MGP_C3HHeJ_G0024979.1 mouse_genomes_project 19 52975123 52976482 + Smc3 protein_coding retained_intron MGP_C3HHeJ_T0051400.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39260239 39298466 - MGP_C3HHeJ_P0051400 Aldh18a1 protein_coding protein_coding MGP_C3HHeJ_T0051401.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39260239 39298372 - MGP_C3HHeJ_P0051401 Aldh18a1 protein_coding protein_coding MGP_C3HHeJ_T0051402.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39261133 39264848 - Aldh18a1 protein_coding retained_intron MGP_C3HHeJ_T0051403.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39263409 39264726 - MGP_C3HHeJ_P0051403 Aldh18a1 protein_coding protein_coding MGP_C3HHeJ_T0051404.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39267055 39298426 - Aldh18a1 protein_coding retained_intron MGP_C3HHeJ_T0051405.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39284352 39298387 - MGP_C3HHeJ_P0051405 Aldh18a1 protein_coding protein_coding MGP_C3HHeJ_T0051406.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39287623 39298413 - MGP_C3HHeJ_P0051406 Aldh18a1 protein_coding protein_coding MGP_C3HHeJ_T0051407.1 MGP_C3HHeJ_G0024843.1 mouse_genomes_project 19 39287666 39298385 - MGP_C3HHeJ_P0051407 Aldh18a1 protein_coding protein_coding MGP_C3HHeJ_T0051114.1 MGP_C3HHeJ_G0024740.1 mouse_genomes_project 19 25241545 25256114 + MGP_C3HHeJ_P0051114 Kcnv2 protein_coding protein_coding MGP_C3HHeJ_T0051642.1 MGP_C3HHeJ_G0024923.1 mouse_genomes_project 19 44717666 44720962 - MGP_C3HHeJ_P0051642 Npm3 protein_coding protein_coding MGP_C3HHeJ_T0051643.1 MGP_C3HHeJ_G0024923.1 mouse_genomes_project 19 44719913 44720920 - Npm3 protein_coding retained_intron MGP_C3HHeJ_T0050021.1 MGP_C3HHeJ_G0024367.1 mouse_genomes_project 19 699610 716816 - MGP_C3HHeJ_P0050021 Aldh3b1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0006990.1 MGP_C3HHeJ_G0005737.1 mouse_genomes_project 19 20834813 20835638 + 2410080I02Rik lincRNA lincRNA MGP_C3HHeJ_T0099149.1 MGP_C3HHeJ_G0037343.1 mouse_genomes_project 19 9863605 9863712 + Gm24521 snRNA snRNA MGP_C3HHeJ_T0051718.1 MGP_C3HHeJ_G0024942.1 mouse_genomes_project 19 45548119 45594258 - MGP_C3HHeJ_P0051718 Arl3 protein_coding protein_coding MGP_C3HHeJ_T0010205.1 MGP_C3HHeJ_G0008338.1 mouse_genomes_project 19 3553800 3553926 + Gm26460 miRNA miRNA MGP_C3HHeJ_T0099155.1 MGP_C3HHeJ_G0037349.1 mouse_genomes_project 19 23279575 23279679 - Gm26207 snRNA snRNA MGP_C3HHeJ_T0051354.1 MGP_C3HHeJ_G0024825.1 mouse_genomes_project 19 36910153 36920744 + MGP_C3HHeJ_P0051354 Slc35g1 protein_coding protein_coding MGP_C3HHeJ_T0051430.1 MGP_C3HHeJ_G0024849.1 mouse_genomes_project 19 39756949 39789931 + MGP_C3HHeJ_P0051430 Dntt protein_coding protein_coding MGP_C3HHeJ_T0051431.1 MGP_C3HHeJ_G0024849.1 mouse_genomes_project 19 39756949 39789931 + MGP_C3HHeJ_P0051431 Dntt protein_coding protein_coding MGP_C3HHeJ_T0050666.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5893678 5895624 - MGP_C3HHeJ_P0050666 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050667.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895510 5907279 - MGP_C3HHeJ_P0050667 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050668.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895643 5898119 - Taf6l protein_coding retained_intron MGP_C3HHeJ_T0050669.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895648 5907220 - MGP_C3HHeJ_P0050669 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050670.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895650 5907279 - MGP_C3HHeJ_P0050670 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050671.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895652 5907380 - MGP_C3HHeJ_P0050671 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050672.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895685 5904962 - MGP_C3HHeJ_P0050672 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050673.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5895685 5904962 - MGP_C3HHeJ_P0050673 Taf6l protein_coding protein_coding MGP_C3HHeJ_T0050674.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5896593 5900244 - Taf6l protein_coding retained_intron MGP_C3HHeJ_T0050675.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5899108 5907244 - Taf6l protein_coding retained_intron MGP_C3HHeJ_T0050676.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5899744 5903286 - Taf6l protein_coding processed_transcript MGP_C3HHeJ_T0050677.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5899770 5903640 - Taf6l protein_coding retained_intron MGP_C3HHeJ_T0050678.1 MGP_C3HHeJ_G0024542.1 mouse_genomes_project 19 5902773 5907228 - Taf6l protein_coding retained_intron MGP_C3HHeJ_T0013231.1 MGP_C3HHeJ_G0011335.1 mouse_genomes_project 19 6029063 6032508 + processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051285.1 MGP_C3HHeJ_G0024802.1 mouse_genomes_project 19 34449646 34471467 + MGP_C3HHeJ_P0051285 Rpp30 protein_coding protein_coding MGP_C3HHeJ_T0013256.1 MGP_C3HHeJ_G0011360.1 mouse_genomes_project 19 45714418 45715425 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051083.1 MGP_C3HHeJ_G0024734.1 mouse_genomes_project 19 23335706 23454908 + MGP_C3HHeJ_P0051083 Dmrt1 protein_coding protein_coding MGP_C3HHeJ_T0051084.1 MGP_C3HHeJ_G0024734.1 mouse_genomes_project 19 23335794 23454070 + MGP_C3HHeJ_P0051084 Dmrt1 protein_coding protein_coding MGP_C3HHeJ_T0051085.1 MGP_C3HHeJ_G0024734.1 mouse_genomes_project 19 23335795 23407959 + Dmrt1 protein_coding processed_transcript MGP_C3HHeJ_T0010227.1 MGP_C3HHeJ_G0008360.1 mouse_genomes_project 19 37579333 37579397 - Gm23800 miRNA miRNA MGP_C3HHeJ_T0013258.1 MGP_C3HHeJ_G0011362.1 mouse_genomes_project 19 53120956 53121376 - processed_pseudogene processed_pseudogene MGP_C3HHeJ_T0051383.1 MGP_C3HHeJ_G0024838.1 mouse_genomes_project 19 38682936 38722461 - MGP_C3HHeJ_P0051383 Cyp2c54 protein_coding protein_coding MGP_C3HHeJ_T0003776.1 MGP_C3HHeJ_G0003384.1 mouse_genomes_project 19 2779842 2785542 + Frmd8os antisense antisense MGP_C3HHeJ_T0003777.1 MGP_C3HHeJ_G0003384.1 mouse_genomes_project 19 2782661 2785526 + Frmd8os antisense antisense MGP_C3HHeJ_T0011382.1 MGP_C3HHeJ_G0009515.1 mouse_genomes_project 19 16290592 16290808 - Gm24190 misc_RNA misc_RNA MGP_C3HHeJ_T0098092.1 MGP_C3HHeJ_G0036304.1 mouse_genomes_project 19 3122925 3123045 + n-R5s19 rRNA rRNA MGP_C3HHeJ_T0010211.1 MGP_C3HHeJ_G0008344.1 mouse_genomes_project 19 6801599 6801703 + Gm22369 miRNA miRNA MGP_C3HHeJ_T0003782.1 MGP_C3HHeJ_G0003387.1 mouse_genomes_project 19 3532463 3533592 - Gm14967 antisense antisense MGP_C3HHeJ_T0100402.1 MGP_C3HHeJ_G0038596.1 mouse_genomes_project 19 5846140 5846205 + Gm22744 snoRNA snoRNA MGP_C3HHeJ_T0051427.1 MGP_C3HHeJ_G0024848.1 mouse_genomes_project 19 39655230 39720910 - MGP_C3HHeJ_P0051427 Blnk protein_coding protein_coding MGP_C3HHeJ_T0051428.1 MGP_C3HHeJ_G0024848.1 mouse_genomes_project 19 39655230 39720523 - MGP_C3HHeJ_P0051428 Blnk protein_coding protein_coding MGP_C3HHeJ_T0051429.1 MGP_C3HHeJ_G0024848.1 mouse_genomes_project 19 39689885 39720910 - Blnk protein_coding retained_intron MGP_C3HHeJ_T0101382.1 MGP_C3HHeJ_G0039437.1 mouse_genomes_project 19 37788134 37821984 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0101383.1 MGP_C3HHeJ_G0039437.1 mouse_genomes_project 19 37788164 37821941 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C3HHeJ_T0101384.1 MGP_C3HHeJ_G0039437.1 mouse_genomes_project 19 37818728 37822232 + transcribed_unprocessed_pseudogene processed_transcript MGP_C3HHeJ_T0050776.1 MGP_C3HHeJ_G0024582.1 mouse_genomes_project 19 7518640 7540000 - MGP_C3HHeJ_P0050776 Tmem216 protein_coding protein_coding MGP_C3HHeJ_T0050777.1 MGP_C3HHeJ_G0024582.1 mouse_genomes_project 19 7524182 7540015 - MGP_C3HHeJ_P0050777 Tmem216 protein_coding protein_coding MGP_C3HHeJ_T0050778.1 MGP_C3HHeJ_G0024582.1 mouse_genomes_project 19 7534724 7540502 - MGP_C3HHeJ_P0050778 Tmem216 protein_coding protein_coding MGP_C3HHeJ_T0050779.1 MGP_C3HHeJ_G0024582.1 mouse_genomes_project 19 7534755 7540015 - MGP_C3HHeJ_P0050779 Tmem216 protein_coding protein_coding MGP_C3HHeJ_T0050780.1 MGP_C3HHeJ_G0024582.1 mouse_genomes_project 19 7534813 7540015 - MGP_C3HHeJ_P0050780 Tmem216 protein_coding protein_coding MGP_C3HHeJ_T0050781.1 MGP_C3HHeJ_G0024582.1 mouse_genomes_project 19 7539010 7540015 - Tmem216 protein_coding retained_intron MGP_C3HHeJ_T0050230.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325186 2327100 - MGP_C3HHeJ_P0050230 Drap1 protein_coding protein_coding MGP_C3HHeJ_T0050231.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325190 2326309 - Drap1 protein_coding retained_intron MGP_C3HHeJ_T0050232.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325194 2326606 - Drap1 protein_coding retained_intron MGP_C3HHeJ_T0050233.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325212 2327173 - Drap1 protein_coding retained_intron MGP_C3HHeJ_T0050234.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325212 2327307 - MGP_C3HHeJ_P0050234 Drap1 protein_coding protein_coding MGP_C3HHeJ_T0050235.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325246 2326467 - Drap1 protein_coding retained_intron MGP_C3HHeJ_T0050236.1 MGP_C3HHeJ_G0024438.1 mouse_genomes_project 19 2325992 2327165 - Drap1 protein_coding retained_intron MGP_C3HHeJ_T0010239.1 MGP_C3HHeJ_G0008372.1 mouse_genomes_project 19 48863220 48863299 - Gm27935 miRNA miRNA MGP_C3HHeJ_T0017488.1 MGP_C3HHeJ_G0015146.1 mouse_genomes_project 19 9778488 9789155 - A330040F15Rik processed_transcript processed_transcript MGP_C3HHeJ_T0051260.1 MGP_C3HHeJ_G0024789.1 mouse_genomes_project 19 32582691 32625318 + MGP_C3HHeJ_P0051260 Fas protein_coding protein_coding MGP_C3HHeJ_T0051261.1 MGP_C3HHeJ_G0024789.1 mouse_genomes_project 19 32582691 32602537 + MGP_C3HHeJ_P0051261 Fas protein_coding protein_coding MGP_C3HHeJ_T0051621.1 MGP_C3HHeJ_G0024918.1 mouse_genomes_project 19 44323793 44495039 + MGP_C3HHeJ_P0051621 Btrc protein_coding protein_coding MGP_C3HHeJ_T0051622.1 MGP_C3HHeJ_G0024918.1 mouse_genomes_project 19 44323793 44495039 + MGP_C3HHeJ_P0051622 Btrc protein_coding protein_coding MGP_C3HHeJ_T0051623.1 MGP_C3HHeJ_G0024918.1 mouse_genomes_project 19 44323898 44493718 + MGP_C3HHeJ_P0051623 Btrc protein_coding unknown_likely_coding MGP_C3HHeJ_T0051711.1 MGP_C3HHeJ_G0024940.1 mouse_genomes_project 19 45403149 45501930 + MGP_C3HHeJ_P0051711 Sufu protein_coding protein_coding MGP_C3HHeJ_T0051712.1 MGP_C3HHeJ_G0024940.1 mouse_genomes_project 19 45403171 45499174 + MGP_C3HHeJ_P0051712 Sufu protein_coding protein_coding MGP_C3HHeJ_T0051713.1 MGP_C3HHeJ_G0024940.1 mouse_genomes_project 19 45403257 45466821 + MGP_C3HHeJ_P0051713 Sufu protein_coding protein_coding MGP_C3HHeJ_T0051714.1 MGP_C3HHeJ_G0024940.1 mouse_genomes_project 19 45403279 45490056 + MGP_C3HHeJ_P0051714 Sufu protein_coding protein_coding MGP_C3HHeJ_T0051715.1 MGP_C3HHeJ_G0024940.1 mouse_genomes_project 19 45469019 45488757 + Sufu protein_coding processed_transcript MGP_C3HHeJ_T0051716.1 MGP_C3HHeJ_G0024940.1 mouse_genomes_project 19 45496216 45499108 + Sufu protein_coding retained_intron MGP_C3HHeJ_T0099166.1 MGP_C3HHeJ_G0037360.1 mouse_genomes_project 19 46814510 46814614 - Gm24805 snRNA snRNA MGP_C3HHeJ_T0051890.1 MGP_C3HHeJ_G0025000.1 mouse_genomes_project 19 56330978 56375333 + MGP_C3HHeJ_P0051890 Tdrd1 protein_coding protein_coding MGP_C3HHeJ_T0051891.1 MGP_C3HHeJ_G0025000.1 mouse_genomes_project 19 56331044 56375333 + MGP_C3HHeJ_P0051891 Tdrd1 protein_coding protein_coding MGP_C3HHeJ_T0051892.1 MGP_C3HHeJ_G0025000.1 mouse_genomes_project 19 56331055 56375333 + MGP_C3HHeJ_P0051892 Tdrd1 protein_coding protein_coding MGP_C3HHeJ_T0051893.1 MGP_C3HHeJ_G0025000.1 mouse_genomes_project 19 56335480 56375333 + MGP_C3HHeJ_P0051893 Tdrd1 protein_coding protein_coding MGP_C3HHeJ_T0006992.1 MGP_C3HHeJ_G0005739.1 mouse_genomes_project 19 23538397 23539497 - 2610016A17Rik lincRNA lincRNA MGP_C3HHeJ_T0006993.1 MGP_C3HHeJ_G0005739.1 mouse_genomes_project 19 23538435 23539480 - 2610016A17Rik lincRNA lincRNA MGP_C3HHeJ_T0006994.1 MGP_C3HHeJ_G0005739.1 mouse_genomes_project 19 23538828 23539511 - 2610016A17Rik lincRNA lincRNA MGP_C3HHeJ_T0007010.1 MGP_C3HHeJ_G0005750.1 mouse_genomes_project 19 39589383 39596660 + E030044B06Rik lincRNA lincRNA MGP_C3HHeJ_T0010232.1 MGP_C3HHeJ_G0008365.1 mouse_genomes_project 19 42452441 42452560 + Gm22646 miRNA miRNA MGP_C3HHeJ_T0010198.1 MGP_C3HHeJ_G0008331.1 mouse_genomes_project 19 1093043 1093104 - Mir6985 miRNA miRNA MGP_C3HHeJ_T0050409.1 MGP_C3HHeJ_G0024489.1 mouse_genomes_project 19 3205116 3213224 - MGP_C3HHeJ_P0050409 Ppp2r5b protein_coding protein_coding MGP_C3HHeJ_T0050410.1 MGP_C3HHeJ_G0024489.1 mouse_genomes_project 19 3206636 3207831 - Ppp2r5b protein_coding retained_intron MGP_C3HHeJ_T0050411.1 MGP_C3HHeJ_G0024489.1 mouse_genomes_project 19 3211288 3213195 - Ppp2r5b protein_coding processed_transcript MGP_C3HHeJ_T0050904.1 MGP_C3HHeJ_G0024631.1 mouse_genomes_project 19 9155948 9156881 - MGP_C3HHeJ_P0050904 Olfr1423 protein_coding protein_coding MGP_C3HHeJ_T0050026.1 MGP_C3HHeJ_G0024369.1 mouse_genomes_project 19 745055 766765 + MGP_C3HHeJ_P0050026 protein_coding protein_coding MGP_C3HHeJ_T0050027.1 MGP_C3HHeJ_G0024369.1 mouse_genomes_project 19 745216 766764 + MGP_C3HHeJ_P0050027 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0100401.1 MGP_C3HHeJ_G0038595.1 mouse_genomes_project 19 5845916 5845992 + Gm24453 snoRNA snoRNA MGP_C3HHeJ_T0050550.1 MGP_C3HHeJ_G0024512.1 mouse_genomes_project 19 3991966 3997170 - MGP_C3HHeJ_P0050550 Vegfb protein_coding protein_coding MGP_C3HHeJ_T0050551.1 MGP_C3HHeJ_G0024512.1 mouse_genomes_project 19 3991966 3997148 - MGP_C3HHeJ_P0050551 Vegfb protein_coding protein_coding MGP_C3HHeJ_T0050552.1 MGP_C3HHeJ_G0024512.1 mouse_genomes_project 19 3995912 3996659 - Vegfb protein_coding retained_intron MGP_C3HHeJ_T0098096.1 MGP_C3HHeJ_G0036308.1 mouse_genomes_project 19 41975045 41975153 - Gm22135 rRNA rRNA MGP_C3HHeJ_T0051576.1 MGP_C3HHeJ_G0024899.1 mouse_genomes_project 19 43161172 43175022 + MGP_C3HHeJ_P0051576 Scd2 protein_coding protein_coding MGP_C3HHeJ_T0099159.1 MGP_C3HHeJ_G0037353.1 mouse_genomes_project 19 34764319 34764425 - Gm23170 snRNA snRNA MGP_C3HHeJ_T0011388.1 MGP_C3HHeJ_G0009521.1 mouse_genomes_project 19 37447644 37447764 + Gm25838 misc_RNA misc_RNA MGP_C3HHeJ_T0050841.1 MGP_C3HHeJ_G0024606.1 mouse_genomes_project 19 8226705 8237701 - MGP_C3HHeJ_P0050841 Ms4a12 protein_coding protein_coding MGP_C3HHeJ_T0051450.1 MGP_C3HHeJ_G0024859.1 mouse_genomes_project 19 40602649 40604804 - MGP_C3HHeJ_P0051450 Frat2 protein_coding protein_coding MGP_C3HHeJ_T0050373.1 MGP_C3HHeJ_G0024479.1 mouse_genomes_project 19 3047952 3048705 + MGP_C3HHeJ_P0050373 Tmem262 protein_coding protein_coding MGP_C3HHeJ_T0050374.1 MGP_C3HHeJ_G0024479.1 mouse_genomes_project 19 3047952 3048708 + MGP_C3HHeJ_P0050374 Tmem262 protein_coding protein_coding MGP_C3HHeJ_T0051237.1 MGP_C3HHeJ_G0024777.1 mouse_genomes_project 19 31679668 32068756 - MGP_C3HHeJ_P0051237 Lipo3 protein_coding protein_coding MGP_C3HHeJ_T0051242.1 MGP_C3HHeJ_G0024777.1 mouse_genomes_project 19 31680733 31689144 - Lipo3 protein_coding retained_intron MGP_C3HHeJ_T0050897.1 MGP_C3HHeJ_G0024626.1 mouse_genomes_project 19 8876807 8925111 - MGP_C3HHeJ_P0050897 Stx3 protein_coding protein_coding MGP_C3HHeJ_T0050898.1 MGP_C3HHeJ_G0024626.1 mouse_genomes_project 19 8876807 8924605 - MGP_C3HHeJ_P0050898 Stx3 protein_coding protein_coding MGP_C3HHeJ_T0050899.1 MGP_C3HHeJ_G0024626.1 mouse_genomes_project 19 8879175 8925111 - MGP_C3HHeJ_P0050899 Stx3 protein_coding protein_coding MGP_C3HHeJ_T0050909.1 MGP_C3HHeJ_G0024636.1 mouse_genomes_project 19 9384360 9385780 + MGP_C3HHeJ_P0050909 protein_coding protein_coding MGP_C3HHeJ_T0007028.1 MGP_C3HHeJ_G0005762.1 mouse_genomes_project 19 52785774 52787864 + 4833407H14Rik lincRNA lincRNA MGP_C3HHeJ_T0050568.1 MGP_C3HHeJ_G0024522.1 mouse_genomes_project 19 4301436 4304256 + MGP_C3HHeJ_P0050568 Rcor2 protein_coding protein_coding MGP_C3HHeJ_T0050569.1 MGP_C3HHeJ_G0024522.1 mouse_genomes_project 19 4302412 4310190 + MGP_C3HHeJ_P0050569 Rcor2 protein_coding protein_coding MGP_C3HHeJ_T0050570.1 MGP_C3HHeJ_G0024522.1 mouse_genomes_project 19 4303073 4310196 + MGP_C3HHeJ_P0050570 Rcor2 protein_coding protein_coding MGP_C3HHeJ_T0050571.1 MGP_C3HHeJ_G0024522.1 mouse_genomes_project 19 4305916 4306734 + Rcor2 protein_coding retained_intron MGP_C3HHeJ_T0051078.1 MGP_C3HHeJ_G0024732.1 mouse_genomes_project 19 22791744 23007928 + MGP_C3HHeJ_P0051078 Dock8 protein_coding protein_coding MGP_C3HHeJ_T0050545.1 MGP_C3HHeJ_G0024509.1 mouse_genomes_project 19 3960590 3977934 - MGP_C3HHeJ_P0050545 Plcb3 protein_coding protein_coding MGP_C3HHeJ_T0051989.1 MGP_C3HHeJ_G0025032.1 mouse_genomes_project 19 60946956 60951015 - MGP_C3HHeJ_P0051989 Csf2ra protein_coding protein_coding MGP_C3HHeJ_T0049968.1 MGP_C3HHeJ_G0024360.1 mouse_genomes_project 19 213586 337426 - MGP_C3HHeJ_P0049968 Ppp6r3 protein_coding unknown_likely_coding MGP_C3HHeJ_T0049969.1 MGP_C3HHeJ_G0024360.1 mouse_genomes_project 19 213590 337344 - MGP_C3HHeJ_P0049969 Ppp6r3 protein_coding protein_coding MGP_C3HHeJ_T0049970.1 MGP_C3HHeJ_G0024360.1 mouse_genomes_project 19 213590 337344 - MGP_C3HHeJ_P0049970 Ppp6r3 protein_coding protein_coding MGP_C3HHeJ_T0049971.1 MGP_C3HHeJ_G0024360.1 mouse_genomes_project 19 213590 337344 - MGP_C3HHeJ_P0049971 Ppp6r3 protein_coding protein_coding MGP_C3HHeJ_T0050924.1 MGP_C3HHeJ_G0024648.1 mouse_genomes_project 19 9826028 9849847 + MGP_C3HHeJ_P0050924 Glyat protein_coding protein_coding MGP_C3HHeJ_T0050925.1 MGP_C3HHeJ_G0024648.1 mouse_genomes_project 19 9826235 9845106 + Glyat protein_coding retained_intron MGP_C3HHeJ_T0050926.1 MGP_C3HHeJ_G0024648.1 mouse_genomes_project 19 9826235 9827834 + Glyat protein_coding processed_transcript MGP_C3HHeJ_T0050927.1 MGP_C3HHeJ_G0024648.1 mouse_genomes_project 19 9826253 9850510 + MGP_C3HHeJ_P0050927 Glyat protein_coding protein_coding MGP_C3HHeJ_T0050928.1 MGP_C3HHeJ_G0024648.1 mouse_genomes_project 19 9832150 9847020 + Glyat protein_coding processed_transcript MGP_C3HHeJ_T0050786.1 MGP_C3HHeJ_G0024587.1 mouse_genomes_project 19 7621471 7665464 + MGP_C3HHeJ_P0050786 Vwce protein_coding protein_coding MGP_C3HHeJ_T0051626.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44546814 44632516 - MGP_C3HHeJ_P0051626 Fbxw4 protein_coding protein_coding MGP_C3HHeJ_T0051628.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44547179 44562598 - MGP_C3HHeJ_P0051628 Fbxw4 protein_coding protein_coding MGP_C3HHeJ_T0051629.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44547360 44560973 - MGP_C3HHeJ_P0051629 Fbxw4 protein_coding protein_coding MGP_C3HHeJ_T0051630.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44547362 44548456 - Fbxw4 protein_coding retained_intron MGP_C3HHeJ_T0051631.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44547406 44560973 - MGP_C3HHeJ_P0051631 Fbxw4 protein_coding protein_coding MGP_C3HHeJ_T0051632.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44547477 44561792 - MGP_C3HHeJ_P0051632 Fbxw4 protein_coding protein_coding MGP_C3HHeJ_T0051633.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44548327 44600216 - Fbxw4 protein_coding retained_intron MGP_C3HHeJ_T0051634.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44560591 44600216 - Fbxw4 protein_coding retained_intron MGP_C3HHeJ_T0051635.1 MGP_C3HHeJ_G0024921.1 mouse_genomes_project 19 44599951 44610575 - MGP_C3HHeJ_P0051635 Fbxw4 protein_coding protein_coding MGP_C3HHeJ_T0000985.1 MGP_C3HHeJ_G0000922.1 mouse_genomes_project 19 8685342 8686874 - TEC TEC MGP_C3HHeJ_T0050961.1 MGP_C3HHeJ_G0024673.1 mouse_genomes_project 19 10661266 10662196 + MGP_C3HHeJ_P0050961 Olfr1469 protein_coding protein_coding MGP_C3HHeJ_T0051746.1 MGP_C3HHeJ_G0024958.1 mouse_genomes_project 19 46251140 46251806 - MGP_C3HHeJ_P0051746 Gm6970 protein_coding protein_coding MGP_C3HHeJ_T0050698.1 MGP_C3HHeJ_G0024550.1 mouse_genomes_project 19 6003795 6009371 + MGP_C3HHeJ_P0050698 Ubxn1 protein_coding protein_coding MGP_C3HHeJ_T0050699.1 MGP_C3HHeJ_G0024550.1 mouse_genomes_project 19 6003879 6009371 + MGP_C3HHeJ_P0050699 Ubxn1 protein_coding protein_coding MGP_C3HHeJ_T0051452.1 MGP_C3HHeJ_G0024861.1 mouse_genomes_project 19 40673401 40679358 + MGP_C3HHeJ_P0051452 Pgam1 protein_coding protein_coding MGP_C3HHeJ_T0051453.1 MGP_C3HHeJ_G0024861.1 mouse_genomes_project 19 40673609 40679310 + MGP_C3HHeJ_P0051453 Pgam1 protein_coding unknown_likely_coding MGP_C3HHeJ_T0050697.1 MGP_C3HHeJ_G0024549.1 mouse_genomes_project 19 5981580 5984705 + MGP_C3HHeJ_P0050697 Lrrn4cl protein_coding protein_coding MGP_C3HHeJ_T0051883.1 MGP_C3HHeJ_G0024998.1 mouse_genomes_project 19 56220064 56222552 + MGP_C3HHeJ_P0051883 Adrb1 protein_coding protein_coding MGP_C3HHeJ_T0050735.1 MGP_C3HHeJ_G0024566.1 mouse_genomes_project 19 6823768 6851169 - MGP_C3HHeJ_P0050735 Incenp protein_coding protein_coding MGP_C3HHeJ_T0051827.1 MGP_C3HHeJ_G0024986.1 mouse_genomes_project 19 54606411 54615335 + MGP_C3HHeJ_P0051827 Tectb protein_coding protein_coding MGP_C3HHeJ_T0051828.1 MGP_C3HHeJ_G0024986.1 mouse_genomes_project 19 54606414 54620535 + MGP_C3HHeJ_P0051828 Tectb protein_coding protein_coding MGP_C3HHeJ_T0051829.1 MGP_C3HHeJ_G0024986.1 mouse_genomes_project 19 54606563 54621979 + MGP_C3HHeJ_P0051829 Tectb protein_coding protein_coding MGP_C3HHeJ_T0051830.1 MGP_C3HHeJ_G0024986.1 mouse_genomes_project 19 54615247 54620360 + MGP_C3HHeJ_P0051830 Tectb protein_coding protein_coding MGP_C3HHeJ_T0051831.1 MGP_C3HHeJ_G0024986.1 mouse_genomes_project 19 54615299 54615994 + Tectb protein_coding retained_intron MGP_C3HHeJ_T0051832.1 MGP_C3HHeJ_G0024986.1 mouse_genomes_project 19 54617702 54621970 + Tectb protein_coding processed_transcript MGP_C3HHeJ_T0050994.1 MGP_C3HHeJ_G0024696.1 mouse_genomes_project 19 14394866 14671435 + MGP_C3HHeJ_P0050994 Prune2 protein_coding protein_coding MGP_C3HHeJ_T0050995.1 MGP_C3HHeJ_G0024696.1 mouse_genomes_project 19 14579712 14671444 + MGP_C3HHeJ_P0050995 Prune2 protein_coding unknown_likely_coding MGP_C3HHeJ_T0051279.1 MGP_C3HHeJ_G0024801.1 mouse_genomes_project 19 34318903 34423171 - MGP_C3HHeJ_P0051279 Htr7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051280.1 MGP_C3HHeJ_G0024801.1 mouse_genomes_project 19 34318903 34423171 - MGP_C3HHeJ_P0051280 Htr7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051281.1 MGP_C3HHeJ_G0024801.1 mouse_genomes_project 19 34318903 34423151 - MGP_C3HHeJ_P0051281 Htr7 protein_coding protein_coding MGP_C3HHeJ_T0051282.1 MGP_C3HHeJ_G0024801.1 mouse_genomes_project 19 34318914 34423179 - MGP_C3HHeJ_P0051282 Htr7 protein_coding protein_coding MGP_C3HHeJ_T0051283.1 MGP_C3HHeJ_G0024801.1 mouse_genomes_project 19 34319989 34423318 - MGP_C3HHeJ_P0051283 Htr7 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051284.1 MGP_C3HHeJ_G0024801.1 mouse_genomes_project 19 34320484 34423184 - MGP_C3HHeJ_P0051284 Htr7 protein_coding protein_coding MGP_C3HHeJ_T0050954.1 MGP_C3HHeJ_G0024666.1 mouse_genomes_project 19 10310168 10311074 - MGP_C3HHeJ_P0050954 Olfr1458 protein_coding protein_coding MGP_C3HHeJ_T0006996.1 MGP_C3HHeJ_G0005741.1 mouse_genomes_project 19 26621256 26667689 + D930032P07Rik lincRNA lincRNA MGP_C3HHeJ_T0006997.1 MGP_C3HHeJ_G0005741.1 mouse_genomes_project 19 26621260 26667414 + D930032P07Rik lincRNA lincRNA MGP_C3HHeJ_T0010216.1 MGP_C3HHeJ_G0008349.1 mouse_genomes_project 19 15371308 15371401 - Gm23063 miRNA miRNA MGP_C3HHeJ_T0051700.1 MGP_C3HHeJ_G0024935.1 mouse_genomes_project 19 45313388 45319158 - MGP_C3HHeJ_P0051700 Psd protein_coding unknown_likely_coding MGP_C3HHeJ_T0051701.1 MGP_C3HHeJ_G0024935.1 mouse_genomes_project 19 45313395 45328465 - MGP_C3HHeJ_P0051701 Psd protein_coding protein_coding MGP_C3HHeJ_T0051702.1 MGP_C3HHeJ_G0024935.1 mouse_genomes_project 19 45313395 45328465 - MGP_C3HHeJ_P0051702 Psd protein_coding protein_coding MGP_C3HHeJ_T0051267.1 MGP_C3HHeJ_G0024793.1 mouse_genomes_project 19 32914846 32919832 + MGP_C3HHeJ_P0051267 protein_coding protein_coding MGP_C3HHeJ_T0051859.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55761463 55799667 + MGP_C3HHeJ_P0051859 Habp2 protein_coding protein_coding MGP_C3HHeJ_T0051860.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55762249 55800399 + MGP_C3HHeJ_P0051860 Habp2 protein_coding protein_coding MGP_C3HHeJ_T0051861.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55762263 55788228 + Habp2 protein_coding processed_transcript MGP_C3HHeJ_T0051862.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55762323 55799213 + MGP_C3HHeJ_P0051862 Habp2 protein_coding protein_coding MGP_C3HHeJ_T0051863.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55762323 55795873 + MGP_C3HHeJ_P0051863 Habp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051864.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55788053 55795995 + MGP_C3HHeJ_P0051864 Habp2 protein_coding protein_coding MGP_C3HHeJ_T0051865.1 MGP_C3HHeJ_G0024992.1 mouse_genomes_project 19 55789185 55799207 + MGP_C3HHeJ_P0051865 Habp2 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0006971.1 MGP_C3HHeJ_G0005725.1 mouse_genomes_project 19 2728579 2735562 - Malat1 lincRNA lincRNA MGP_C3HHeJ_T0006972.1 MGP_C3HHeJ_G0005725.1 mouse_genomes_project 19 2728580 2730354 - Malat1 lincRNA lincRNA MGP_C3HHeJ_T0006973.1 MGP_C3HHeJ_G0005725.1 mouse_genomes_project 19 2728583 2729842 - Malat1 lincRNA lincRNA MGP_C3HHeJ_T0006974.1 MGP_C3HHeJ_G0005725.1 mouse_genomes_project 19 2734805 2735561 - Malat1 lincRNA lincRNA MGP_C3HHeJ_T0006975.1 MGP_C3HHeJ_G0005725.1 mouse_genomes_project 19 2734832 2735530 - Malat1 lincRNA lincRNA MGP_C3HHeJ_T0051483.1 MGP_C3HHeJ_G0024869.1 mouse_genomes_project 19 40841757 40853409 - MGP_C3HHeJ_P0051483 Morn4 protein_coding protein_coding MGP_C3HHeJ_T0051535.1 MGP_C3HHeJ_G0024887.1 mouse_genomes_project 19 42575797 42597938 - MGP_C3HHeJ_P0051535 Cox15 protein_coding protein_coding MGP_C3HHeJ_T0051536.1 MGP_C3HHeJ_G0024887.1 mouse_genomes_project 19 42581432 42584389 - Cox15 protein_coding retained_intron MGP_C3HHeJ_T0050210.1 MGP_C3HHeJ_G0024427.1 mouse_genomes_project 19 1976790 1984581 - MGP_C3HHeJ_P0050210 Rab1b protein_coding protein_coding MGP_C3HHeJ_T0050913.1 MGP_C3HHeJ_G0024640.1 mouse_genomes_project 19 9519745 9521316 - MGP_C3HHeJ_P0050913 Olfr1436 protein_coding protein_coding MGP_C3HHeJ_T0050554.1 MGP_C3HHeJ_G0024514.1 mouse_genomes_project 19 4002536 4005628 - MGP_C3HHeJ_P0050554 Nudt22 protein_coding protein_coding MGP_C3HHeJ_T0050555.1 MGP_C3HHeJ_G0024514.1 mouse_genomes_project 19 4002536 4005548 - MGP_C3HHeJ_P0050555 Nudt22 protein_coding protein_coding MGP_C3HHeJ_T0050556.1 MGP_C3HHeJ_G0024514.1 mouse_genomes_project 19 4002537 4004389 - Nudt22 protein_coding retained_intron MGP_C3HHeJ_T0051355.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37001400 37041929 + protein_coding processed_transcript MGP_C3HHeJ_T0051356.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37001412 37339889 + MGP_C3HHeJ_P0051356 protein_coding protein_coding MGP_C3HHeJ_T0051357.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37042059 37341519 + MGP_C3HHeJ_P0051357 protein_coding protein_coding MGP_C3HHeJ_T0051358.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37042071 37339254 + MGP_C3HHeJ_P0051358 protein_coding protein_coding MGP_C3HHeJ_T0051359.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37108689 37185279 + MGP_C3HHeJ_P0051359 protein_coding protein_coding MGP_C3HHeJ_T0051360.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37264470 37340047 + protein_coding retained_intron MGP_C3HHeJ_T0051361.1 MGP_C3HHeJ_G0024826.1 mouse_genomes_project 19 37276859 37300721 + protein_coding retained_intron MGP_C3HHeJ_T0051363.1 MGP_C3HHeJ_G0024828.1 mouse_genomes_project 19 37396700 37484374 + MGP_C3HHeJ_P0051363 Tbc1d12 protein_coding protein_coding MGP_C3HHeJ_T0051458.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40701971 40743746 - MGP_C3HHeJ_P0051458 Mms19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051459.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40701971 40743789 - MGP_C3HHeJ_P0051459 Mms19 protein_coding protein_coding MGP_C3HHeJ_T0051460.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40704941 40725352 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051461.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40704945 40732358 - MGP_C3HHeJ_P0051461 Mms19 protein_coding protein_coding MGP_C3HHeJ_T0051462.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40704947 40743768 - MGP_C3HHeJ_P0051462 Mms19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051463.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40704947 40743749 - MGP_C3HHeJ_P0051463 Mms19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051464.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40705113 40743764 - MGP_C3HHeJ_P0051464 Mms19 protein_coding protein_coding MGP_C3HHeJ_T0051465.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40705225 40715864 - MGP_C3HHeJ_P0051465 Mms19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051466.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40705285 40706364 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051467.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40707538 40743771 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051468.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40707726 40714671 - MGP_C3HHeJ_P0051468 Mms19 protein_coding protein_coding MGP_C3HHeJ_T0051469.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40707911 40708979 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051470.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40708421 40743769 - MGP_C3HHeJ_P0051470 Mms19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051471.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40710443 40712061 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051472.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40713823 40743762 - MGP_C3HHeJ_P0051472 Mms19 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0051473.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40715182 40715893 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051474.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40723520 40723848 - Mms19 protein_coding retained_intron MGP_C3HHeJ_T0051475.1 MGP_C3HHeJ_G0024864.1 mouse_genomes_project 19 40723728 40732377 - MGP_C3HHeJ_P0051475 Mms19 protein_coding protein_coding MGP_C3HHeJ_T0100403.1 MGP_C3HHeJ_G0038597.1 mouse_genomes_project 19 5846389 5846458 + Gm22680 snoRNA snoRNA MGP_C3HHeJ_T0050681.1 MGP_C3HHeJ_G0024545.1 mouse_genomes_project 19 5933581 5943831 - MGP_C3HHeJ_P0050681 Ttc9c protein_coding protein_coding MGP_C3HHeJ_T0050682.1 MGP_C3HHeJ_G0024545.1 mouse_genomes_project 19 5935641 5943422 - MGP_C3HHeJ_P0050682 Ttc9c protein_coding protein_coding MGP_C3HHeJ_T0050683.1 MGP_C3HHeJ_G0024545.1 mouse_genomes_project 19 5935801 5943792 - MGP_C3HHeJ_P0050683 Ttc9c protein_coding protein_coding MGP_C3HHeJ_T0050684.1 MGP_C3HHeJ_G0024545.1 mouse_genomes_project 19 5942794 5943730 - Ttc9c protein_coding retained_intron MGP_C3HHeJ_T0051731.1 MGP_C3HHeJ_G0024948.1 mouse_genomes_project 19 45809291 45939668 + MGP_C3HHeJ_P0051731 Cnnm2 protein_coding protein_coding MGP_C3HHeJ_T0051732.1 MGP_C3HHeJ_G0024948.1 mouse_genomes_project 19 45809291 45939668 + MGP_C3HHeJ_P0051732 Cnnm2 protein_coding protein_coding MGP_C3HHeJ_T0051497.1 MGP_C3HHeJ_G0024874.1 mouse_genomes_project 19 40970836 40975072 - MGP_C3HHeJ_P0051497 Sfrp5 protein_coding protein_coding MGP_C3HHeJ_T0050158.1 MGP_C3HHeJ_G0024405.1 mouse_genomes_project 19 1605577 1676931 - MGP_C3HHeJ_P0050158 Gm21992 protein_coding nonsense_mediated_decay MGP_C3HHeJ_T0050166.1 MGP_C3HHeJ_G0024405.1 mouse_genomes_project 19 1649565 1676827 - MGP_C3HHeJ_P0050166 Gm21992 protein_coding protein_coding MGP_C3HHeJ_T0050167.1 MGP_C3HHeJ_G0024405.1 mouse_genomes_project 19 1649566 1676531 - MGP_C3HHeJ_P0050167 Gm21992 protein_coding protein_coding MGP_C3HHeJ_T0050168.1 MGP_C3HHeJ_G0024405.1 mouse_genomes_project 19 1651782 1676827 - MGP_C3HHeJ_P0050168 Gm21992 protein_coding protein_coding MGP_C3HHeJ_T0050170.1 MGP_C3HHeJ_G0024405.1 mouse_genomes_project 19 1655576 1676922 - Gm21992 protein_coding retained_intron MGP_C3HHeJ_T0050171.1 MGP_C3HHeJ_G0024405.1 mouse_genomes_project 19 1656919 1667328 - Gm21992 protein_coding processed_transcript MGP_C3HHeJ_T0010231.1 MGP_C3HHeJ_G0008364.1 mouse_genomes_project 19 41056996 41057085 - Mir3085 miRNA miRNA